[DIR] Parent Directory

This directory contains data generated for the "ENCODE Mapability" track and contains genome sequence uniqueness levels for hg18 as supplied by the Broad Institute; Terry Furey of Duke; Bryan Lajoie of the University of Massachusetts Medical School; and Paolo Ribeca and Thomas Derrien of the Centre for Genomic Regulation (CRG), Barcelona, Spain. Further information is available in the Mapability track description.

Data Release Policy

Data users may freely use all data in this track. ENCODE labs that contributed annotations have exempted their data here from the ENCODE data release policy restrictions.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      no restrictionwgEncodeDukeUniqueness20bp.wig.gz  269M  2008-12-03  dataType=Mapability; subId=104; dataVersion=ENCODE Nov 2008 Freeze; grant=Crawford; lab=Duke; labVersion=1.0 - 4 or less; view=Uniqueness; type=wig; tableName=wgEncodeDukeUniqueness20bp; size=20bp; uniqueness=1=1 occurence,0.5=2,0.33=3,0.25=4,0=5 or more
      no restrictionwgEncodeDukeUniqueness24bp.wig.gz  136M  2008-12-03  dataType=Mapability; subId=104; dataVersion=ENCODE Nov 2008 Freeze; grant=Crawford; lab=Duke; labVersion=1.0 - 4 or less; view=Uniqueness; type=wig; tableName=wgEncodeDukeUniqueness24bp; size=24bp; uniqueness=1=1 occurence,0.5=2,0.33=3,0.25=4,0=5 or more
      no restrictionwgEncodeDukeUniqueness35bp.wig.gz  86M  2008-12-03  dataType=Mapability; subId=104; dataVersion=ENCODE Nov 2008 Freeze; grant=Crawford; lab=Duke; labVersion=1.0 - 4 or less; view=Uniqueness; type=wig; tableName=wgEncodeDukeUniqueness35bp; size=35bp; uniqueness=1=1 occurence,0.5=2,0.33=3,0.25=4,0=5 or more
      no restrictionwgEncodeDukeRegionsExcluded.bed6.gz  19K  2008-12-03  dataType=Mapability; subId=104; dataVersion=ENCODE Nov 2008 Freeze; grant=Crawford; lab=Duke; labVersion=satellite_rna_chrM_500.bed.20080925; view=Excludable; type=bed; tableName=wgEncodeDukeRegionsExcluded
      no restrictionwgEncodeBroadMapabilityAlign36mer.wig.gz  3.1M  2009-06-02  dataType=Mapability; subId=344; dataVersion=ENCODE July 2009 Freeze; grant=Bernstein; lab=Broad; view=Alignability; type=wig; tableName=wgEncodeBroadMapabilityAlign36mer; size=36mer; uniqueness=no more than 2 mismatches
      no restrictionwgEncodeUmassMapabilityUniq15.wig.gz  2.5G  2009-06-04  dataType=Mapability; subId=345; dataVersion=ENCODE July 2009 Freeze; grant=Dekker; lab=UMass-Dekker; view=Uniqueness; type=wig; tableName=wgEncodeUmassMapabilityUniq15; size=15bp
      no restrictionwgEncodeCrgMapabilityAlign100mer.bw.gz  94M  2010-04-27  dataType=Mapability; dataVersion=ENCODE January 2010 Freeze; grant=Gingeras; lab=CRG-Guigo; view=Alignability; type=bigWig; tableName=wgEncodeCrgMapabilityAlign100mer; size=100mer; uniqueness=no more than 2 mismatches
      no restrictionwgEncodeCrgMapabilityAlign36mer.bw.gz  1.3G  2010-04-27  dataType=Mapability; dataVersion=ENCODE January 2010 Freeze; grant=Gingeras; lab=CRG-Guigo; view=Alignability; type=bigWig; tableName=wgEncodeCrgMapabilityAlign36mer; size=36mer; uniqueness=no more than 2 mismatches
      no restrictionwgEncodeCrgMapabilityAlign40mer.bw.gz  1.1G  2010-04-27  dataType=Mapability; dataVersion=ENCODE January 2010 Freeze; grant=Gingeras; lab=CRG-Guigo; view=Alignability; type=bigWig; tableName=wgEncodeCrgMapabilityAlign40mer; size=40mer; uniqueness=no more than 2 mismatches
      no restrictionwgEncodeCrgMapabilityAlign50mer.bw.gz  679M  2010-04-27  dataType=Mapability; dataVersion=ENCODE January 2010 Freeze; grant=Gingeras; lab=CRG-Guigo; view=Alignability; type=bigWig; tableName=wgEncodeCrgMapabilityAlign50mer; size=50mer; uniqueness=no more than 2 mismatches
      no restrictionwgEncodeCrgMapabilityAlign75mer.bw.gz  266M  2010-04-27  dataType=Mapability; dataVersion=ENCODE January 2010 Freeze; grant=Gingeras; lab=CRG-Guigo; view=Alignability; type=bigWig; tableName=wgEncodeCrgMapabilityAlign75mer; size=75mer; uniqueness=no more than 2 mismatches
    11 files