[DIR] Parent Directory

This directory contains data generated by the Bernstein/Broad lab as part of the ENCODE project.

This directory contains the subset of the Broad ChIP-seq signal tracks used in the ENCODE Integrated Regulation Tracks

Further information is available in the ENCODE Histone Modifications by Broad Institute ChIP-seq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-10-04wgEncodeBroadChipSeqSignalGm12878H3k4me3.wig.gz  35M  2009-01-04  dataType=ChipSeq; cell=GM12878; antibody=H3K4me3; setType=exp; subId=140; dataVersion=ENCODE Feb 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalGm12878H3k4me3; controlId=GM12878/Input
      2010-06-28wgEncodeBroadChipSeqSignalH1hescH3k4me3.wig.gz  24M  2009-09-29  dataType=ChipSeq; cell=H1-hESC; antibody=H3K4me3; setType=exp; subId=566; dataVersion=ENCODE Sep 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalH1hescH3k4me3; controlId=H1-hESC/Input
      2010-06-29wgEncodeBroadChipSeqSignalHmecH3k4me3.wig.gz  28M  2009-09-29  dataType=ChipSeq; cell=HMEC; antibody=H3K4me3; setType=exp; subId=565; dataVersion=ENCODE Sep 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalHmecH3k4me3; controlId=HMEC/Input
      2010-09-16wgEncodeBroadChipSeqSignalHsmmH3k4me3.wig.gz  20M  2009-12-16  dataType=ChipSeq; cell=HSMM; antibody=H3K4me3; setType=exp; subId=828; dataVersion=ENCODE Jan 2010 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalHsmmH3k4me3; controlId=HSMM/Input
      2009-10-05wgEncodeBroadChipSeqSignalHuvecH3k4me3.wig.gz  43M  2009-01-05  dataType=ChipSeq; cell=HUVEC; antibody=H3K4me3; setType=exp; subId=162; dataVersion=ENCODE Feb 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalHuvecH3k4me3; controlId=HUVEC/Input
      2010-06-28wgEncodeBroadChipSeqSignalHepg2H3k4me3.wig.gz  17M  2009-09-29  dataType=ChipSeq; cell=HepG2; antibody=H3K4me3; setType=exp; subId=581; dataVersion=ENCODE Sep 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalHepg2H3k4me3; controlId=HepG2/Input
      2009-10-05wgEncodeBroadChipSeqSignalK562H3k4me3.wig.gz  44M  2009-01-05  dataType=ChipSeq; cell=K562; antibody=H3K4me3; setType=exp; subId=150; dataVersion=ENCODE Feb 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalK562H3k4me3; controlId=K562/Input
      2009-10-07wgEncodeBroadChipSeqSignalNhekH3k4me3.wig.gz  40M  2009-01-07  dataType=ChipSeq; cell=NHEK; antibody=H3K4me3; setType=exp; subId=174; dataVersion=ENCODE Feb 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalNhekH3k4me3; controlId=NHEK/Input
      2010-06-28wgEncodeBroadChipSeqSignalNhlfH3k4me3.wig.gz  32M  2009-09-29  dataType=ChipSeq; cell=NHLF; antibody=H3K4me3; setType=exp; subId=578; dataVersion=ENCODE Sep 2009 Freeze; grant=Bernstein; lab=Broad; view=Signal; type=wig; tableName=wgEncodeBroadChipSeqSignalNhlfH3k4me3; controlId=NHLF/Input
    9 files