[DIR] Parent Directory

This directory contains data generated by the Snyder/Yale lab as part of the ENCODE project. Further information is available in the ENCODE Transcription Factor Binding Sites by ChIP-seq from Yale/UC-Davis/Harvard track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

NOTE: This is Release 4 (June 2011) of this track, which includes new experimental data. Release notes are included in the track description. For new versions of previously-released data, the affected database tables and files include 'V3' in the name, and metadata is marked with "submittedDataVersion=V3", followed by the reason for replacement. Previous versions of these files are available for download from the FTP site

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-10-12wgEncodeYaleChIPseqRawDataRep1Gm10847MusiggMusigg.fastq.gz  217M  2010-01-13  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM10847/None/Input/IgG-mus; subId=861; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm10847MusiggMusigg.tagAlign.gz  139M  2010-01-13  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM10847/None/Input/IgG-mus; subId=861; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep2Gm10847MusiggMusigg.fastq.gz  220M  2010-01-13  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM10847/None/Input/IgG-mus; subId=861; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep2Gm10847MusiggMusigg.tagAlign.gz  141M  2010-01-13  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM10847/None/Input/IgG-mus; subId=861; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqSignalGm10847MusiggMusigg.bedGraph4.gz  127M  2010-01-13  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-mus; setType=input; controlId=GM10847/None/Input/IgG-mus; subId=861; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-12-05wgEncodeYaleChIPseqRawDataRep1Gm10847InputIggrab.fastq.gz  194M  2010-03-05  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM10847/None/Input/IgG-rab; subId=1108; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep1Gm10847InputIggrab.tagAlign.gz  134M  2010-03-05  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM10847/None/Input/IgG-rab; subId=1108; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqRawDataRep2Gm10847InputIggrab.fastq.gz  173M  2010-03-05  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM10847/None/Input/IgG-rab; subId=1108; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep2Gm10847InputIggrab.tagAlign.gz  147M  2010-03-05  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM10847/None/Input/IgG-rab; subId=1108; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqSignalGm10847InputIggrab.bedGraph4.gz  119M  2010-03-05  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Input; control=IgG-rab; setType=input; controlId=GM10847/None/Input/IgG-rab; subId=1108; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep1Gm10847NfkbIggrab.tagAlign.gz  227M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep1Gm10847NfkbIggrab.fastq.gz  347M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM10847_IgG_Control; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep2Gm10847NfkbIggrab.tagAlign.gz  226M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=2; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep2Gm10847NfkbIggrab.fastq.gz  311M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=2; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM10847_IgG_Control; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep3Gm10847NfkbIggrab.tagAlign.gz  89M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=3; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep3Gm10847NfkbIggrab.fastq.gz  127M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=3; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM10847_IgG_Control; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep4Gm10847NfkbIggrab.tagAlign.gz  178M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=4; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep4Gm10847NfkbIggrab.fastq.gz  548M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=4; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep5Gm10847NfkbIggrab.tagAlign.gz  217M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=5; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep5Gm10847NfkbIggrab.fastq.gz  683M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; replicate=5; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqPeaksGm10847NfkbIggrab.narrowPeak.gz  837K  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-14wgEncodeYaleChIPseqSignalGm10847NfkbIggrab.bedGraph4.gz  318M  2010-01-14  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=NFKB; control=IgG-rab; setType=exp; controlId=GM10847/None/Input/IgG-rab; subId=1050; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm10847Pol2Musigg.tagAlign.gz  108M  2010-01-12  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM10847/None/Input/IgG-mus; subId=862; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep1Gm10847Pol2Musigg.fastq.gz  173M  2010-01-12  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM10847/None/Input/IgG-mus; subId=862; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control.; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep2Gm10847Pol2Musigg.tagAlign.gz  69M  2010-01-12  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM10847/None/Input/IgG-mus; subId=862; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep2Gm10847Pol2Musigg.fastq.gz  100M  2010-01-12  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM10847/None/Input/IgG-mus; subId=862; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control.; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqPeaksGm10847Pol2Musigg.narrowPeak.gz  649K  2010-01-12  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM10847/None/Input/IgG-mus; subId=862; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-12wgEncodeYaleChIPseqSignalGm10847Pol2Musigg.bedGraph4.gz  185M  2010-01-12  dataType=ChipSeq; cell=GM10847; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM10847/None/Input/IgG-mus; subId=862; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM10847_IgG_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-12wgEncodeYaleChIPseqRawDataRep1Gm12878MusiggMusigg.fastq.gz  179M  2010-01-12  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM12878/None/Input/IgG-mus; subId=956; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm12878MusiggMusigg.tagAlign.gz  116M  2010-01-12  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM12878/None/Input/IgG-mus; subId=956; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep2Gm12878MusiggMusigg.fastq.gz  161M  2010-01-12  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM12878/None/Input/IgG-mus; subId=956; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep2Gm12878MusiggMusigg.tagAlign.gz  109M  2010-01-12  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM12878/None/Input/IgG-mus; subId=956; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqSignalGm12878MusiggMusigg.bedGraph4.gz  97M  2010-01-12  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-mus; setType=input; controlId=GM12878/None/Input/IgG-mus; subId=956; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep1Gm12878InputIggrab.tagAlign.gz  333M  2010-03-05  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM12878/None/Input/IgG-rab; subId=1109; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqRawDataRep1Gm12878InputIggrab.fastq.gz  767M  2010-03-05  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM12878/None/Input/IgG-rab; subId=1109; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep2Gm12878InputIggrab.tagAlign.gz  211M  2010-03-05  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM12878/None/Input/IgG-rab; subId=1109; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqRawDataRep2Gm12878InputIggrab.fastq.gz  511M  2010-03-05  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM12878/None/Input/IgG-rab; subId=1109; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqSignalGm12878InputIggrab.bedGraph4.gz  263M  2010-03-05  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=IgG-rab; setType=input; controlId=GM12878/None/Input/IgG-rab; subId=1109; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-25wgEncodeYaleChIPseqAlignmentsRep1Gm12878InputV2.tagAlign.gz  224M  2009-02-25  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=std; replicate=1; setType=input; controlId=GM12878/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-24wgEncodeYaleChIPseqRel2SignalGm12878Input.bedGraph4.gz  100M  2009-02-24  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=std; setType=input; controlId=GM12878/None/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=279; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-03-21; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-24wgEncodeYaleChIPseqRawDataGm12878Input.fastq.gz  329M  2009-02-24  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Input; control=std; setType=input; controlId=GM12878/None/Input/std; subId=91; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep1Gm12878JundV2.tagAlign.gz  112M  2009-02-27  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=JunD; control=std; replicate=1; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep1Gm12878Jund.fastq.gz  135M  2009-02-27  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=JunD; control=std; replicate=1; setType=exp; controlId=GM12878/None/Input/std; subId=239; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep2Gm12878JundV2.tagAlign.gz  135M  2009-02-27  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=JunD; control=std; replicate=2; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep2Gm12878Jund.fastq.gz  161M  2009-02-27  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=JunD; control=std; replicate=2; setType=exp; controlId=GM12878/None/Input/std; subId=239; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqRel2SignalGm12878Jund.bedGraph4.gz  114M  2009-02-27  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=JunD; control=std; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=324; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-05-02; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-27wgEncodeYaleChIPseqPeaksGm12878JundV2.narrowPeak.gz  250K  2009-02-27  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=JunD; control=std; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V2 - corrected start location, pValue and point peak; subId=404; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-06-30; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2009-10-09wgEncodeYaleChIPseqAlignmentsRep1Gm12878MaxV3.tagAlign.gz  323M  2009-01-09  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Max; control=std; replicate=1; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V3 - Includes previously missing sequence data; subId=1182; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2010-04-28; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2009-10-09wgEncodeYaleChIPseqRawDataRep1Gm12878MaxV3.fastq.gz  380M  2009-01-09  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Max; control=std; replicate=1; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V3 - Includes previously missing sequence data; subId=1182; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2010-04-28; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-10-09wgEncodeYaleChIPseqAlignmentsRep2Gm12878MaxV3.tagAlign.gz  637M  2009-01-09  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Max; control=std; replicate=2; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V3 - Includes previously missing sequence data; subId=1182; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2010-04-28; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2009-10-09wgEncodeYaleChIPseqRawDataRep2Gm12878MaxV3.fastq.gz  1.6G  2009-01-09  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Max; control=std; replicate=2; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V3 - Includes previously missing sequence data; subId=1182; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2010-04-28; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-10-09wgEncodeYaleChIPseqPeaksGm12878MaxV3.narrowPeak.gz  661K  2009-01-09  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Max; control=std; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V3 - Includes previously missing sequence data; subId=1182; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2010-04-28; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2009-10-09wgEncodeYaleChIPseqSignalGm12878MaxV3.bedGraph4.gz  470M  2009-01-09  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=Max; control=std; setType=exp; controlId=GM12878/None/Input/std; submittedDataVersion=V3 - Includes previously missing sequence data; subId=1182; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2010-04-28; grant=Snyder; lab=Yale; labVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm12878NfkbIggrab.tagAlign.gz  611M  2010-01-12  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM12878/None/Input/IgG-rab; subId=943; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM12878_IgG_Control; view=Alignments; type=tagAlign
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      2010-10-07wgEncodeYaleChIPseqPeaksGm12878Tr4.narrowPeak.gz  207K  2010-01-07  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=TR4; control=std; setType=exp; controlId=GM12878/None/Input/std; subId=900; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA PeakSeq 1.0 (fdr 0.001), samples were 71% and 72% matching in the top 40% overlap analysis.; view=Peaks; type=narrowPeak
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      2010-09-19wgEncodeYaleChIPseqAlignmentsRep1Gm12878Yy1.tagAlign.gz  184M  2009-12-20  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=YY1; control=std; replicate=1; setType=exp; controlId=GM12878/None/Input/std; subId=853; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with Staph A,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
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      2010-09-19wgEncodeYaleChIPseqAlignmentsRep2Gm12878Yy1.tagAlign.gz  119M  2009-12-20  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=YY1; control=std; replicate=2; setType=exp; controlId=GM12878/None/Input/std; subId=853; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with Staph A,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-09-19wgEncodeYaleChIPseqRawDataRep2Gm12878Yy1.fastq.gz  630M  2009-12-20  dataType=ChipSeq; cell=GM12878; treatment=None; antibody=YY1; control=std; replicate=2; setType=exp; controlId=GM12878/None/Input/std; subId=853; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with Staph A,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
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      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm12891MusiggMusigg.tagAlign.gz  131M  2010-01-12  dataType=ChipSeq; cell=GM12891; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM12891/None/Input/IgG-mus; subId=863; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
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      2010-10-12wgEncodeYaleChIPseqRawDataRep1Gm15510MusiggMusigg.fastq.gz  816M  2010-01-12  dataType=ChipSeq; cell=GM15510; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM15510/None/Input/IgG-mus; subId=996; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
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      2010-12-05wgEncodeYaleChIPseqAlignmentsRep2Gm15510InputIggrab.tagAlign.gz  118M  2010-03-05  dataType=ChipSeq; cell=GM15510; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM15510/None/Input/IgG-rab; subId=1112; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqSignalGm15510InputIggrab.bedGraph4.gz  158M  2010-03-05  dataType=ChipSeq; cell=GM15510; treatment=None; antibody=Input; control=IgG-rab; setType=input; controlId=GM15510/None/Input/IgG-rab; subId=1112; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-10-14wgEncodeYaleChIPseqAlignmentsRep3Gm15510NfkbIggrab.tagAlign.gz  126M  2010-01-14  dataType=ChipSeq; cell=GM15510; treatment=None; antibody=NFKB; control=IgG-rab; replicate=3; setType=exp; controlId=GM15510/None/Input/IgG-rab; subId=1052; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM15510_IgG_Control.; view=Alignments; type=tagAlign
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      2010-10-13wgEncodeYaleChIPseqSignalGm18505Pol2Musigg.bedGraph4.gz  310M  2010-01-13  dataType=ChipSeq; cell=GM18505; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM18505/None/Input/IgG-mus; subId=1016; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM18505_IgG_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-10-13wgEncodeYaleChIPseqRawDataRep1Gm18526MusiggMusigg.fastq.gz  136M  2010-01-13  dataType=ChipSeq; cell=GM18526; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM18526/None/Input/IgG-mus; subId=1025; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep1Gm18526MusiggMusigg.tagAlign.gz  94M  2010-01-13  dataType=ChipSeq; cell=GM18526; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM18526/None/Input/IgG-mus; subId=1025; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep2Gm18526MusiggMusigg.fastq.gz  205M  2010-01-13  dataType=ChipSeq; cell=GM18526; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM18526/None/Input/IgG-mus; subId=1025; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep2Gm18526MusiggMusigg.tagAlign.gz  171M  2010-01-13  dataType=ChipSeq; cell=GM18526; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM18526/None/Input/IgG-mus; subId=1025; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep3Gm18526MusiggMusigg.fastq.gz  622M  2010-01-13  dataType=ChipSeq; cell=GM18526; treatment=None; antibody=Input; control=IgG-mus; replicate=3; setType=input; controlId=GM18526/None/Input/IgG-mus; subId=1025; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep3Gm18526MusiggMusigg.tagAlign.gz  515M  2010-01-13  dataType=ChipSeq; cell=GM18526; treatment=None; antibody=Input; control=IgG-mus; replicate=3; setType=input; controlId=GM18526/None/Input/IgG-mus; subId=1025; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
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      2010-10-13wgEncodeYaleChIPseqRawDataRep1Gm18951MusiggMusigg.fastq.gz  655M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM18951/None/Input/IgG-mus; subId=1044; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
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      2010-12-05wgEncodeYaleChIPseqRawDataRep2Gm18951InputIggrab.fastq.gz  154M  2010-03-05  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM18951/None/Input/IgG-rab; subId=1115; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep2Gm18951InputIggrab.tagAlign.gz  103M  2010-03-05  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM18951/None/Input/IgG-rab; subId=1115; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqSignalGm18951InputIggrab.bedGraph4.gz  114M  2010-03-05  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Input; control=IgG-rab; setType=input; controlId=GM18951/None/Input/IgG-rab; subId=1115; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep1Gm18951NfkbIggrab.tagAlign.gz  104M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM18951/None/Input/IgG-rab; subId=1053; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM18951_IgG_Control.; view=Alignments; type=tagAlign
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      2010-10-13wgEncodeYaleChIPseqRawDataRep1Gm18951Pol2Musigg.fastq.gz  212M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep1Gm18951Pol2Musigg.tagAlign.gz  65M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep2Gm18951Pol2Musigg.fastq.gz  205M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep2Gm18951Pol2Musigg.tagAlign.gz  128M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep3Gm18951Pol2Musigg.fastq.gz  287M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=3; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep3Gm18951Pol2Musigg.tagAlign.gz  192M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=3; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep4Gm18951Pol2Musigg.fastq.gz  129M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=4; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep4Gm18951Pol2Musigg.tagAlign.gz  93M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; replicate=4; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqPeaksGm18951Pol2Musigg.narrowPeak.gz  583K  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Paired with GM18951_IgG_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-13wgEncodeYaleChIPseqSignalGm18951Pol2Musigg.bedGraph4.gz  191M  2010-01-14  dataType=ChipSeq; cell=GM18951; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM18951/None/Input/IgG-mus; subId=1029; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Paired with GM18951_IgG_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-14wgEncodeYaleChIPseqRawDataRep1Gm19099MusiggMusigg.fastq.gz  193M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM19099/None/Input/IgG-mus; subId=1045; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep1Gm19099MusiggMusigg.tagAlign.gz  133M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM19099/None/Input/IgG-mus; subId=1045; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep2Gm19099MusiggMusigg.fastq.gz  337M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM19099/None/Input/IgG-mus; subId=1045; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep2Gm19099MusiggMusigg.tagAlign.gz  241M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM19099/None/Input/IgG-mus; subId=1045; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqSignalGm19099MusiggMusigg.bedGraph4.gz  171M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-mus; setType=input; controlId=GM19099/None/Input/IgG-mus; subId=1045; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-12-05wgEncodeYaleChIPseqRawDataRep1Gm19099InputIggrab.fastq.gz  171M  2010-03-05  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM19099/None/Input/IgG-rab; subId=1116; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep1Gm19099InputIggrab.tagAlign.gz  152M  2010-03-05  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM19099/None/Input/IgG-rab; subId=1116; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqRawDataRep2Gm19099InputIggrab.fastq.gz  142M  2010-03-05  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM19099/None/Input/IgG-rab; subId=1116; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep2Gm19099InputIggrab.tagAlign.gz  132M  2010-03-05  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM19099/None/Input/IgG-rab; subId=1116; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqSignalGm19099InputIggrab.bedGraph4.gz  81M  2010-03-05  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Input; control=IgG-rab; setType=input; controlId=GM19099/None/Input/IgG-rab; subId=1116; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm19099NfkbIggrab.tagAlign.gz  290M  2010-01-12  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM19099/None/Input/IgG-rab; subId=946; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control; view=Alignments; type=tagAlign
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      2010-10-12wgEncodeYaleChIPseqAlignmentsRep3Gm19099NfkbIggrab.tagAlign.gz  137M  2010-01-12  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=NFKB; control=IgG-rab; replicate=3; setType=exp; controlId=GM19099/None/Input/IgG-rab; subId=946; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control; view=Alignments; type=tagAlign
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      2010-10-12wgEncodeYaleChIPseqPeaksGm19099NfkbIggrab.narrowPeak.gz  1.3M  2010-01-12  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=NFKB; control=IgG-rab; setType=exp; controlId=GM19099/None/Input/IgG-rab; subId=946; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-12wgEncodeYaleChIPseqSignalGm19099NfkbIggrab.bedGraph4.gz  261M  2010-01-12  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=NFKB; control=IgG-rab; setType=exp; controlId=GM19099/None/Input/IgG-rab; subId=946; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep1Gm19099Pol2Musigg.tagAlign.gz  132M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep1Gm19099Pol2Musigg.fastq.gz  192M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=llumina 2.0, low confidence sequences excluded. Data paired with GM19099_IgG_Control.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep2Gm19099Pol2Musigg.tagAlign.gz  105M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep2Gm19099Pol2Musigg.fastq.gz  154M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=llumina 2.0, low confidence sequences excluded. Data paired with GM19099_IgG_Control.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqAlignmentsRep3Gm19099Pol2Musigg.tagAlign.gz  283M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; replicate=3; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-13wgEncodeYaleChIPseqRawDataRep3Gm19099Pol2Musigg.fastq.gz  695M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; replicate=3; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=llumina 2.0, low confidence sequences excluded. Data paired with GM19099_IgG_Control.; view=RawData; type=fastq
      2010-10-13wgEncodeYaleChIPseqPeaksGm19099Pol2Musigg.narrowPeak.gz  458K  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-13wgEncodeYaleChIPseqSignalGm19099Pol2Musigg.bedGraph4.gz  223M  2010-01-14  dataType=ChipSeq; cell=GM19099; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM19099/None/Input/IgG-mus; subId=1046; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19099_IgG_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-14wgEncodeYaleChIPseqRawDataRep1Gm19193MusiggMusigg.fastq.gz  246M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM19193/None/Input/IgG-mus; subId=1047; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep1Gm19193MusiggMusigg.tagAlign.gz  170M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=GM19193/None/Input/IgG-mus; subId=1047; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep2Gm19193MusiggMusigg.fastq.gz  175M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM19193/None/Input/IgG-mus; subId=1047; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep2Gm19193MusiggMusigg.tagAlign.gz  134M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-mus; replicate=2; setType=input; controlId=GM19193/None/Input/IgG-mus; subId=1047; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqSignalGm19193MusiggMusigg.bedGraph4.gz  136M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-mus; setType=input; controlId=GM19193/None/Input/IgG-mus; subId=1047; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-12-05wgEncodeYaleChIPseqRawDataRep1Gm19193InputIggrab.fastq.gz  161M  2010-03-05  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM19193/None/Input/IgG-rab; subId=1117; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep1Gm19193InputIggrab.tagAlign.gz  142M  2010-03-05  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-rab; replicate=1; setType=input; controlId=GM19193/None/Input/IgG-rab; subId=1117; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqRawDataRep2Gm19193InputIggrab.fastq.gz  164M  2010-03-05  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM19193/None/Input/IgG-rab; subId=1117; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-12-05wgEncodeYaleChIPseqAlignmentsRep2Gm19193InputIggrab.tagAlign.gz  121M  2010-03-05  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-rab; replicate=2; setType=input; controlId=GM19193/None/Input/IgG-rab; subId=1117; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-12-05wgEncodeYaleChIPseqSignalGm19193InputIggrab.bedGraph4.gz  169M  2010-03-05  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Input; control=IgG-rab; setType=input; controlId=GM19193/None/Input/IgG-rab; subId=1117; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep1Gm19193NfkbIggrab.tagAlign.gz  277M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep1Gm19193NfkbIggrab.fastq.gz  368M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; replicate=1; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep2Gm19193NfkbIggrab.tagAlign.gz  373M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; replicate=2; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep2Gm19193NfkbIggrab.fastq.gz  706M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; replicate=2; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqAlignmentsRep3Gm19193NfkbIggrab.tagAlign.gz  146M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; replicate=3; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; view=Alignments; type=tagAlign
      2010-10-12wgEncodeYaleChIPseqRawDataRep3Gm19193NfkbIggrab.fastq.gz  183M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; replicate=3; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; view=RawData; type=fastq
      2010-10-12wgEncodeYaleChIPseqPeaksGm19193NfkbIggrab.narrowPeak.gz  947K  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-12wgEncodeYaleChIPseqSignalGm19193NfkbIggrab.bedGraph4.gz  263M  2010-01-12  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=NFKB; control=IgG-rab; setType=exp; controlId=GM19193/None/Input/IgG-rab; subId=947; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep1Gm19193Pol2Musigg.tagAlign.gz  82M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep1Gm19193Pol2Musigg.fastq.gz  142M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=1; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM19193_IgG_Control.; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep2Gm19193Pol2Musigg.tagAlign.gz  125M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep2Gm19193Pol2Musigg.fastq.gz  635M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=2; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM19193_IgG_Control.; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep3Gm19193Pol2Musigg.tagAlign.gz  156M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=3; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep3Gm19193Pol2Musigg.fastq.gz  485M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=3; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM19193_IgG_Control.; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqAlignmentsRep4Gm19193Pol2Musigg.tagAlign.gz  95M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=4; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control.; view=Alignments; type=tagAlign
      2010-10-14wgEncodeYaleChIPseqRawDataRep4Gm19193Pol2Musigg.fastq.gz  131M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; replicate=4; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with GM19193_IgG_Control.; view=RawData; type=fastq
      2010-10-14wgEncodeYaleChIPseqPeaksGm19193Pol2Musigg.narrowPeak.gz  810K  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-14wgEncodeYaleChIPseqSignalGm19193Pol2Musigg.bedGraph4.gz  196M  2010-01-14  dataType=ChipSeq; cell=GM19193; treatment=None; antibody=Pol2; control=IgG-mus; setType=exp; controlId=GM19193/None/Input/IgG-mus; subId=1048; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with GM19193_IgG_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-25wgEncodeYaleChIPseqAlignmentsRep1Hct116InputV2.tagAlign.gz  289M  2009-02-25  dataType=ChipSeq; cell=HCT-116; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=HCT-116/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; fragLength=200; view=Alignments; type=tagAlign
      2009-11-25wgEncodeYaleChIPseqRel2SignalHct116Input.bedGraph4.gz  123M  2009-02-25  dataType=ChipSeq; cell=HCT-116; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=HCT-116/None/Input/UCDavis; submittedDataVersion=V2 - corrected sparse signals; subId=279; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-03-20; grant=Snyder; lab=UCD; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-02-15wgEncodeYaleChIPseqRawDataRep1Hct116Pol2.fastq.gz  356M  2009-05-15  dataType=ChipSeq; cell=HCT-116; treatment=None; antibody=Pol2; control=UCDavis; replicate=1; setType=exp; controlId=HCT-116/None/Input/UCDavis; subId=333; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads, PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
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      2009-11-25wgEncodeYaleChIPseqAlignmentsRep1Hek293InputV2.tagAlign.gz  275M  2009-02-25  dataType=ChipSeq; cell=HEK293(b); treatment=None; antibody=Input; control=std; setType=input; controlId=HEK293/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2009-11-25wgEncodeYaleChIPseqRel2SignalHek293Pol2.bedGraph4.gz  85M  2009-02-25  dataType=ChipSeq; cell=HEK293(b); treatment=None; antibody=Pol2; control=std; setType=exp; controlId=HEK293/None/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=324; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-05-02; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-25wgEncodeYaleChIPseqPeaksHek293Pol2V2.narrowPeak.gz  405K  2009-02-25  dataType=ChipSeq; cell=HEK293(b); treatment=None; antibody=Pol2; control=std; setType=exp; controlId=HEK293/None/Input/std; submittedDataVersion=V2 - corrected start location, pValue and point peak; subId=404; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-06-30; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-12-08wgEncodeYaleChIPseqAlignmentsRep1HuvecInputStd.tagAlign.gz  571M  2010-03-08  dataType=ChipSeq; cell=HUVEC; treatment=None; antibody=Input; control=std; replicate=1; setType=input; controlId=HUVEC/None/Input/std; subId=1118; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale; view=Alignments; type=tagAlign
      2010-12-08wgEncodeYaleChIPseqRawDataRep1HuvecInputStd.fastq.gz  1.3G  2010-03-08  dataType=ChipSeq; cell=HUVEC; treatment=None; antibody=Input; control=std; replicate=1; setType=input; controlId=HUVEC/None/Input/std; subId=1118; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2009-07-31wgEncodeYaleChIPseqRel2SignalHelas3ifngInput.bedGraph4.gz  211M  2008-10-31  dataType=ChipSeq; cell=HeLa-S3; treatment=IFNg30; antibody=Input; control=std; setType=input; controlId=HeLa-S3/IFNg30/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=279; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-03-20; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-06-23wgEncodeYaleChIPseqAlignmentsRep1Helas3Ap2alpha.tagAlign.gz  147M  2009-09-24  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=AP-2alpha; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; subId=536; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Helas3Brf2.tagAlign.gz  384M  2010-01-16  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=BRF2; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; subId=1087; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; view=Alignments; type=tagAlign
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      2009-11-25wgEncodeYaleChIPseqAlignmentsRep1Helas3MouseiggV2.tagAlign.gz  265M  2009-02-25  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=Input; control=IgG-mus; replicate=1; setType=input; controlId=HeLa-S3/None/Input/IgG-mus; submittedDataVersion=V2 - corrected locations; subId=787; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-25; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2009-07-31wgEncodeYaleChIPseqAlignmentsRep1Helas3Pol2V2.tagAlign.gz  156M  2008-10-31  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2009-07-31wgEncodeYaleChIPseqRel2SignalHelas3Pol2.bedGraph4.gz  88M  2008-10-31  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=Pol2; control=std; setType=exp; controlId=HeLa-S3/None/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=324; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-05-02; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Helas3Rpc155.tagAlign.gz  383M  2010-01-16  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=RPC155; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; subId=1082; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Helas3Rpc155.fastq.gz  1007M  2010-01-16  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=RPC155; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; subId=1082; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Helas3Rpc155.tagAlign.gz  388M  2010-01-16  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=RPC155; control=std; replicate=2; setType=exp; controlId=HeLa-S3/None/Input/std; subId=1082; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Helas3Rpc155.fastq.gz  982M  2010-01-16  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=RPC155; control=std; replicate=2; setType=exp; controlId=HeLa-S3/None/Input/std; subId=1082; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; view=RawData; type=fastq
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      2010-02-04wgEncodeYaleChIPseqAlignmentsRep1Helas3CmycV2.tagAlign.gz  108M  2009-05-05  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=c-Myc; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-02-04wgEncodeYaleChIPseqRawDataRep1Helas3Cmyc.fastq.gz  185M  2009-05-05  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=c-Myc; control=std; replicate=1; setType=exp; controlId=HeLa-S3/None/Input/std; subId=316; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Contains incomplete fastq files; view=RawData; type=fastq
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      2010-02-04wgEncodeYaleChIPseqRawDataRep2Helas3Cmyc.fastq.gz  309M  2009-05-05  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=c-Myc; control=std; replicate=2; setType=exp; controlId=HeLa-S3/None/Input/std; subId=316; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Contains incomplete fastq files; view=RawData; type=fastq
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      2010-02-04wgEncodeYaleChIPseqPeaksHelas3Cmyc.narrowPeak.gz  395K  2009-05-05  dataType=ChipSeq; cell=HeLa-S3; treatment=None; antibody=c-Myc; control=std; setType=exp; controlId=HeLa-S3/None/Input/std; subId=439; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-07-20; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2CebpbForskln.tagAlign.gz  150M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=CEBPB; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1062; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2Grp20Forskln.tagAlign.gz  129M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=GRp20; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1067; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2Grp20Forskln.tagAlign.gz  109M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=GRp20; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1067; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqSignalHepg2Grp20Forskln.bedGraph4.gz  107M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=GRp20; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1067; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2Hnf4aForskln.tagAlign.gz  99M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HNF4A; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1068; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2Hnf4aForskln.fastq.gz  147M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HNF4A; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1068; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2Hnf4aForskln.tagAlign.gz  147M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HNF4A; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1068; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2Hnf4aForskln.fastq.gz  210M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HNF4A; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1068; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqPeaksHepg2Hnf4aForskln.narrowPeak.gz  520K  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HNF4A; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1068; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-15wgEncodeYaleChIPseqSignalHepg2Hnf4aForskln.bedGraph4.gz  116M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HNF4A; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1068; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2Hsf1Forskln.tagAlign.gz  132M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HSF1; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1069; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2Hsf1Forskln.fastq.gz  184M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HSF1; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1069; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2Hsf1Forskln.tagAlign.gz  78M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HSF1; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1069; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2Hsf1Forskln.fastq.gz  122M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HSF1; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1069; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqPeaksHepg2Hsf1Forskln.narrowPeak.gz  83K  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HSF1; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1069; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-15wgEncodeYaleChIPseqSignalHepg2Hsf1Forskln.bedGraph4.gz  96M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=HSF1; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1069; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2ControlForskln.fastq.gz  159M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Input; control=std; replicate=1; setType=input; controlId=HepG2/forskolin/Input/std; subId=1066; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2ControlForskln.tagAlign.gz  123M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Input; control=std; replicate=1; setType=input; controlId=HepG2/forskolin/Input/std; subId=1066; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2ControlForskln.fastq.gz  153M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Input; control=std; replicate=2; setType=input; controlId=HepG2/forskolin/Input/std; subId=1066; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2ControlForskln.tagAlign.gz  103M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Input; control=std; replicate=2; setType=input; controlId=HepG2/forskolin/Input/std; subId=1066; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqSignalHepg2ControlForskln.bedGraph4.gz  105M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Input; control=std; setType=input; controlId=HepG2/forskolin/Input/std; subId=1066; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2Pgc1aForskln.tagAlign.gz  154M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=PGC1A; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1071; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2Pgc1aForskln.fastq.gz  236M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=PGC1A; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1071; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2Pgc1aForskln.tagAlign.gz  105M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=PGC1A; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1071; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2Pgc1aForskln.fastq.gz  143M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=PGC1A; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1071; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqPeaksHepg2Pgc1aForskln.narrowPeak.gz  43K  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=PGC1A; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1071; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-15wgEncodeYaleChIPseqSignalHepg2Pgc1aForskln.bedGraph4.gz  114M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=PGC1A; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1071; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2Pol2Forskln.tagAlign.gz  165M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1072; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2Pol2Forskln.fastq.gz  216M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1072; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2Pol2Forskln.tagAlign.gz  76M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1072; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2Pol2Forskln.fastq.gz  99M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1072; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqPeaksHepg2Pol2Forskln.narrowPeak.gz  385K  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Pol2; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1072; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-15wgEncodeYaleChIPseqSignalHepg2Pol2Forskln.bedGraph4.gz  111M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=forskolin; antibody=Pol2; control=std; setType=exp; controlId=HepG2/forskolin/Input/std; subId=1072; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Forskolin_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2ControlInsln.fastq.gz  168M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=Input; control=std; replicate=1; setType=input; controlId=HepG2/insulin/Input/std; subId=1070; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2ControlInsln.tagAlign.gz  121M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=Input; control=std; replicate=1; setType=input; controlId=HepG2/insulin/Input/std; subId=1070; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2ControlInsln.fastq.gz  94M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=Input; control=std; replicate=2; setType=input; controlId=HepG2/insulin/Input/std; subId=1070; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2ControlInsln.tagAlign.gz  57M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=Input; control=std; replicate=2; setType=input; controlId=HepG2/insulin/Input/std; subId=1070; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqSignalHepg2ControlInsln.bedGraph4.gz  81M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=Input; control=std; setType=input; controlId=HepG2/insulin/Input/std; subId=1070; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Hepg2Srebp1aInsln.tagAlign.gz  70M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; replicate=1; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Insulin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Hepg2Srebp1aInsln.fastq.gz  115M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; replicate=1; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Insulin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Hepg2Srebp1aInsln.tagAlign.gz  58M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; replicate=2; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Insulin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Hepg2Srebp1aInsln.fastq.gz  91M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; replicate=2; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Insulin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep3Hepg2Srebp1aInsln.tagAlign.gz  56M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; replicate=3; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Insulin_Control.; view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep3Hepg2Srebp1aInsln.fastq.gz  89M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; replicate=3; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Insulin_Control.; view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqPeaksHepg2Srebp1aInsln.narrowPeak.gz  78K  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Insulin_Control.; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-10-15wgEncodeYaleChIPseqSignalHepg2Srebp1aInsln.bedGraph4.gz  86M  2010-01-15  dataType=ChipSeq; cell=HepG2; treatment=insulin; antibody=SREBP1; control=std; setType=exp; controlId=HepG2/insulin/Input/std; subId=1073; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; labVersion=Data paired with HepG2_Insulin_Control.; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep1Hepg2InputV2.tagAlign.gz  28M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; replicate=1; setType=input; controlId=HepG2/pravastatin/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep1Hepg2Input.fastq.gz  50M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; replicate=1; setType=input; controlId=HepG2/pravastatin/Input/std; subId=240; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep2Hepg2InputV2.tagAlign.gz  95M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; replicate=2; setType=input; controlId=HepG2/pravastatin/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep2Hepg2Input.fastq.gz  107M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; replicate=2; setType=input; controlId=HepG2/pravastatin/Input/std; subId=240; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep3Hepg2InputV2.tagAlign.gz  104M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; replicate=3; setType=input; controlId=HepG2/pravastatin/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep3Hepg2Input.fastq.gz  136M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; replicate=3; setType=input; controlId=HepG2/pravastatin/Input/std; subId=240; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqRel2SignalHepg2Input.bedGraph4.gz  100M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Input; control=std; setType=input; controlId=HepG2/pravastatin/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=279; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-03-20; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep1Hepg2Pol2V2.tagAlign.gz  34M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=HepG2/pravastatin/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep1Hepg2Pol2.fastq.gz  62M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=HepG2/pravastatin/Input/std; subId=241; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep2Hepg2Pol2V2.tagAlign.gz  84M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=HepG2/pravastatin/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep2Hepg2Pol2.fastq.gz  111M  2009-02-27  dataType=ChipSeq; cell=HepG2; treatment=pravastatin; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=HepG2/pravastatin/Input/std; subId=241; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2010-03-11wgEncodeYaleChIPseqAlignmentsRep1Hepg2bInputV2.tagAlign.gz  389M  2009-06-12  dataType=ChipSeq; cell=HepG2b; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=HepG2b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; fragLength=200; view=Alignments; type=tagAlign
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      2010-03-11wgEncodeYaleChIPseqAlignmentsRep1Hepg2bTr4V2.tagAlign.gz  192M  2009-06-12  dataType=ChipSeq; cell=HepG2b; treatment=None; antibody=TR4; control=UCDavis; replicate=1; setType=exp; controlId=HepG2b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataRep1Hepg2bTr4.fastq.gz  301M  2009-06-12  dataType=ChipSeq; cell=HepG2b; treatment=None; antibody=TR4; control=UCDavis; replicate=1; setType=exp; controlId=HepG2b/None/Input/UCDavis; subId=372; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads, PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-11wgEncodeYaleChIPseqAlignmentsRep2Hepg2bTr4V2.tagAlign.gz  222M  2009-06-12  dataType=ChipSeq; cell=HepG2b; treatment=None; antibody=TR4; control=UCDavis; replicate=2; setType=exp; controlId=HepG2b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataRep2Hepg2bTr4.fastq.gz  542M  2009-06-12  dataType=ChipSeq; cell=HepG2b; treatment=None; antibody=TR4; control=UCDavis; replicate=2; setType=exp; controlId=HepG2b/None/Input/UCDavis; subId=372; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
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      2010-03-11wgEncodeYaleChIPseqSignalHepg2bTr4.bedGraph4.gz  182M  2009-06-12  dataType=ChipSeq; cell=HepG2b; treatment=None; antibody=TR4; control=UCDavis; setType=exp; controlId=HepG2b/None/Input/UCDavis; subId=372; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-03-08wgEncodeYaleChIPseqAlignmentsRep1K562InputIfna30V2.tagAlign.gz  333M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Input; control=std; replicate=1; setType=input; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2010-03-08wgEncodeYaleChIPseqRawDataK562Ifna30Input.fastq.gz  849M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Input; control=std; setType=input; controlId=K562/IFNa30/Input/std; subId=349; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-03-09wgEncodeYaleChIPseqAlignmentsRep1K562Pol2Ifna30V2.tagAlign.gz  223M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2010-12-21; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-09wgEncodeYaleChIPseqRawDataRep1K562Ifna30Pol2.fastq.gz  324M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; subId=370; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-09wgEncodeYaleChIPseqAlignmentsRep2K562Pol2Ifna30V2.tagAlign.gz  188M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2010-12-21; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-09wgEncodeYaleChIPseqRawDataRep2K562Ifna30Pol2.fastq.gz  481M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; subId=370; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-03-09wgEncodeYaleChIPseqPeaksK562Ifna30Pol2.narrowPeak.gz  498K  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Pol2; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=370; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-03-09wgEncodeYaleChIPseqSignalK562Ifna30Pol2.bedGraph4.gz  188M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=Pol2; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=370; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-03-09wgEncodeYaleChIPseqAlignmentsRep1K562Stat1Ifna30V2.tagAlign.gz  186M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT1; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-09wgEncodeYaleChIPseqRawDataRep1K562Ifna30Stat1.fastq.gz  624M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT1; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; subId=361; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
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      2010-03-09wgEncodeYaleChIPseqRawDataRep2K562Ifna30Stat1.fastq.gz  566M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT1; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; subId=361; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-09wgEncodeYaleChIPseqPeaksK562Ifna30Stat1.narrowPeak.gz  45K  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT1; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=361; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-03-09wgEncodeYaleChIPseqSignalK562Ifna30Stat1.bedGraph4.gz  170M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT1; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=361; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-03-09wgEncodeYaleChIPseqAlignmentsRep1K562Stat2Ifna30V2.tagAlign.gz  175M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT2; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-09wgEncodeYaleChIPseqRawDataRep1K562Ifna30Stat2.fastq.gz  279M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT2; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; subId=363; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-09wgEncodeYaleChIPseqAlignmentsRep2K562Stat2Ifna30V2.tagAlign.gz  187M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT2; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-09wgEncodeYaleChIPseqRawDataRep2K562Ifna30Stat2.fastq.gz  492M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT2; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; subId=363; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-03-09wgEncodeYaleChIPseqPeaksK562Ifna30Stat2.narrowPeak.gz  131K  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT2; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=363; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-03-09wgEncodeYaleChIPseqSignalK562Ifna30Stat2.bedGraph4.gz  175M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=STAT2; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=363; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-03-08wgEncodeYaleChIPseqAlignmentsRep1K562CmycIfna30V2.tagAlign.gz  215M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=c-Myc; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-08wgEncodeYaleChIPseqRawDataRep1K562Ifna30Cmyc.fastq.gz  320M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=c-Myc; control=std; replicate=1; setType=exp; controlId=K562/IFNa30/Input/std; subId=366; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-08wgEncodeYaleChIPseqAlignmentsRep2K562CmycIfna30V2.tagAlign.gz  174M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=c-Myc; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-08wgEncodeYaleChIPseqRawDataRep2K562Ifna30Cmyc.fastq.gz  544M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=c-Myc; control=std; replicate=2; setType=exp; controlId=K562/IFNa30/Input/std; subId=366; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2010-03-08wgEncodeYaleChIPseqSignalK562Ifna30Cmyc.bedGraph4.gz  191M  2009-06-08  dataType=ChipSeq; cell=K562; treatment=IFNa30; antibody=c-Myc; control=std; setType=exp; controlId=K562/IFNa30/Input/std; subId=366; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-03-09wgEncodeYaleChIPseqAlignmentsRep1K562Pol2Ifna6hV2.tagAlign.gz  232M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa6h; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=K562/IFNa6h/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2010-12-21; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-09wgEncodeYaleChIPseqRawDataRep1K562Ifna6hPol2.fastq.gz  315M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa6h; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=K562/IFNa6h/Input/std; subId=360; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2010-03-09wgEncodeYaleChIPseqAlignmentsRep2K562CjunIfna6hV2.tagAlign.gz  191M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa6h; antibody=c-Jun; control=std; replicate=2; setType=exp; controlId=K562/IFNa6h/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2010-03-09wgEncodeYaleChIPseqSignalK562Ifna6hCjun.bedGraph4.gz  170M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa6h; antibody=c-Jun; control=std; setType=exp; controlId=K562/IFNa6h/Input/std; subId=368; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-03-09wgEncodeYaleChIPseqAlignmentsRep1K562CmycIfna6hV2.tagAlign.gz  210M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa6h; antibody=c-Myc; control=std; replicate=1; setType=exp; controlId=K562/IFNa6h/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2010-03-09wgEncodeYaleChIPseqAlignmentsRep2K562CmycIfna6hV2.tagAlign.gz  217M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNa6h; antibody=c-Myc; control=std; replicate=2; setType=exp; controlId=K562/IFNa6h/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2010-10-14wgEncodeYaleChIPseqSignalK562Stat1Ifng30.bedGraph4.gz  176M  2010-01-15  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=STAT1; control=std; setType=exp; controlId=K562/IFNg30/Input/std; subId=1058; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Stanford; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-03-11wgEncodeYaleChIPseqAlignmentsRep1K562CjunIfng30V2.tagAlign.gz  179M  2009-06-11  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=c-Jun; control=std; replicate=1; setType=exp; controlId=K562/IFNg30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataRep1K562Ifng30Cjun.fastq.gz  509M  2009-06-11  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=c-Jun; control=std; replicate=1; setType=exp; controlId=K562/IFNg30/Input/std; subId=373; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-03-11wgEncodeYaleChIPseqAlignmentsRep2K562CjunIfng30V2.tagAlign.gz  179M  2009-06-11  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=c-Jun; control=std; replicate=2; setType=exp; controlId=K562/IFNg30/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataRep2K562Ifng30Cjun.fastq.gz  693M  2009-06-11  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=c-Jun; control=std; replicate=2; setType=exp; controlId=K562/IFNg30/Input/std; subId=373; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2010-03-11wgEncodeYaleChIPseqPeaksK562Ifng30Cjun.narrowPeak.gz  288K  2009-06-11  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=c-Jun; control=std; setType=exp; controlId=K562/IFNg30/Input/std; subId=373; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2010-03-11wgEncodeYaleChIPseqSignalK562Ifng30Cjun.bedGraph4.gz  150M  2009-06-11  dataType=ChipSeq; cell=K562; treatment=IFNg30; antibody=c-Jun; control=std; setType=exp; controlId=K562/IFNg30/Input/std; subId=373; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-03-09wgEncodeYaleChIPseqRawDataRep1K562Ifng6hPol2.fastq.gz  288M  2009-06-09  dataType=ChipSeq; cell=K562; treatment=IFNg6h; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=K562/IFNg6h/Input/std; subId=359; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2010-03-22wgEncodeYaleChIPseqAlignmentsRep1K562Bdp1V2.tagAlign.gz  178M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BDP1; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; fragLength=200; view=Alignments; type=tagAlign
      2010-03-22wgEncodeYaleChIPseqRawDataRep1K562Bdp1.fastq.gz  523M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BDP1; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=383; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; view=RawData; type=fastq
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      2010-03-22wgEncodeYaleChIPseqRawDataRep2K562Bdp1.fastq.gz  580M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BDP1; control=std; replicate=2; setType=exp; controlId=K562/None/Input/std; subId=383; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; view=RawData; type=fastq
      2010-03-22wgEncodeYaleChIPseqAlignmentsRep3K562Bdp1V2.tagAlign.gz  187M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BDP1; control=std; replicate=3; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; fragLength=200; view=Alignments; type=tagAlign
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      2010-03-22wgEncodeYaleChIPseqAlignmentsRep1K562Brf1V2.tagAlign.gz  158M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF1; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; fragLength=200; view=Alignments; type=tagAlign
      2010-03-22wgEncodeYaleChIPseqRawDataRep1K562Brf1.fastq.gz  216M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF1; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=384; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Harvard; labVersion=Illumina 2.0, low confidence sequences excluded, fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; view=RawData; type=fastq
      2010-03-22wgEncodeYaleChIPseqAlignmentsRep2K562Brf1V2.tagAlign.gz  112M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF1; control=std; replicate=2; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; fragLength=200; view=Alignments; type=tagAlign
      2010-03-22wgEncodeYaleChIPseqRawDataRep2K562Brf1.fastq.gz  158M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF1; control=std; replicate=2; setType=exp; controlId=K562/None/Input/std; subId=384; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Harvard; labVersion=Illumina 2.0, low confidence sequences excluded, fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; view=RawData; type=fastq
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      2010-03-22wgEncodeYaleChIPseqRawDataRep3K562Brf1.fastq.gz  89M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF1; control=std; replicate=3; setType=exp; controlId=K562/None/Input/std; subId=384; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Harvard; labVersion=Illumina 2.0, low confidence sequences excluded, fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; view=RawData; type=fastq
      2010-03-22wgEncodeYaleChIPseqSignalK562Brf1.bedGraph4.gz  139M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF1; control=std; setType=exp; controlId=K562/None/Input/std; subId=384; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; softwareVersion=PeakSeq1.0 (fdr 0.01); view=Signal; type=bedGraph4
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      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1K562Brf2.tagAlign.gz  177M  2010-01-16  dataType=ChipSeq; cell=K562; treatment=None; antibody=BRF2; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=1083; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; view=Alignments; type=tagAlign
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      2009-10-09wgEncodeYaleChIPseqRawDataRep1K562Nfe2.fastq.gz  171M  2009-01-09  dataType=ChipSeq; cell=K562; treatment=None; antibody=NF-E2; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=189; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2010-03-22wgEncodeYaleChIPseqAlignmentsRep1K562Rpc155V2.tagAlign.gz  175M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=RPC155; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; fragLength=200; view=Alignments; type=tagAlign
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      2010-02-04wgEncodeYaleChIPseqAlignmentsRep1K562Rad21V2.tagAlign.gz  231M  2009-05-05  dataType=ChipSeq; cell=K562; treatment=None; antibody=Rad21; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2010-03-22wgEncodeYaleChIPseqAlignmentsRep1K562Sirt6V2.tagAlign.gz  214M  2009-06-22  dataType=ChipSeq; cell=K562; treatment=None; antibody=SIRT6; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Harvard; labVersion=fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads; fragLength=200; view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqRawDataRep1K562Tfiiic.fastq.gz  176M  2010-01-15  dataType=ChipSeq; cell=K562; treatment=None; antibody=TFIIIC-110; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=1081; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=Harvard; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
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      2010-02-04wgEncodeYaleChIPseqSignalK562Xrcc4.bedGraph4.gz  169M  2009-05-05  dataType=ChipSeq; cell=K562; treatment=None; antibody=XRCC4; control=std; setType=exp; controlId=K562/None/Input/std; subId=320; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-02-04wgEncodeYaleChIPseqPeaksK562Xrcc4.narrowPeak.gz  8.7K  2009-05-05  dataType=ChipSeq; cell=K562; treatment=None; antibody=XRCC4; control=std; setType=exp; controlId=K562/None/Input/std; subId=405; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-07-01; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Peaks; type=narrowPeak
      2009-08-21wgEncodeYaleChIPseqAlignmentsRep1K562Cfos.tagAlign.gz  115M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=68; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
      2009-08-21wgEncodeYaleChIPseqRawDataRep1K562Cfos.fastq.gz  168M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=68; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-08-21wgEncodeYaleChIPseqAlignmentsRep2K562Cfos.tagAlign.gz  95M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; replicate=2; setType=exp; controlId=K562/None/Input/std; subId=68; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
      2009-08-21wgEncodeYaleChIPseqRawDataRep2K562Cfos.fastq.gz  153M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; replicate=2; setType=exp; controlId=K562/None/Input/std; subId=68; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-08-21wgEncodeYaleChIPseqAlignmentsRep3K562Cfos.tagAlign.gz  123M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; replicate=3; setType=exp; controlId=K562/None/Input/std; subId=68; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
      2009-08-21wgEncodeYaleChIPseqRawDataRep3K562Cfos.fastq.gz  164M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; replicate=3; setType=exp; controlId=K562/None/Input/std; subId=68; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
      2009-08-21wgEncodeYaleChIPseqRel2SignalK562Cfos.bedGraph4.gz  143M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Fos; control=std; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=324; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-05-02; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2009-08-21wgEncodeYaleChIPseqAlignmentsRep1K562CjunV2.tagAlign.gz  187M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Jun; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=Yale; fragLength=200; view=Alignments; type=tagAlign
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      2009-08-21wgEncodeYaleChIPseqAlignmentsRep1K562Cmyc.tagAlign.gz  115M  2008-11-21  dataType=ChipSeq; cell=K562; treatment=None; antibody=c-Myc; control=std; replicate=1; setType=exp; controlId=K562/None/Input/std; subId=69; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1K562bSetdb1Mnase.tagAlign.gz  247M  2010-01-16  dataType=ChipSeq; cell=K562b; treatment=MNaseD; antibody=SETDB1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1088; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using MNase and used proteinA agarose beads for ChIPs,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
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      2010-10-15wgEncodeYaleChIPseqSignalK562bSetdb1Mnase.bedGraph4.gz  189M  2010-01-16  dataType=ChipSeq; cell=K562b; treatment=MNaseD; antibody=SETDB1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1088; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using MNase and used proteinA agarose beads for ChIPs,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-03-11wgEncodeYaleChIPseqAlignmentsRep1K562bE2f4V2.tagAlign.gz  103M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F4; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2),; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataRep1K562bE2f4.fastq.gz  200M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F4; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=334; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2), PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-11wgEncodeYaleChIPseqAlignmentsRep2K562bE2f4V2.tagAlign.gz  200M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F4; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2),; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataRep2K562bE2f4.fastq.gz  424M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F4; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=334; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2), PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-11wgEncodeYaleChIPseqSignalK562bE2f4.bedGraph4.gz  131M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F4; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=334; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2),; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-03-11wgEncodeYaleChIPseqPeaksK562bE2f4.narrowPeak.gz  319K  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F4; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=439; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-07-20; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2),; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-03-15wgEncodeYaleChIPseqAlignmentsRep1K562bE2f6V2.tagAlign.gz  102M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F6; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-15wgEncodeYaleChIPseqRawDataRep1K562bE2f6.fastq.gz  504M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F6; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=371; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA PeakSeq 1.0 (fdr 0.001) Lane A is Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-15wgEncodeYaleChIPseqAlignmentsRep2K562bE2f6V2.tagAlign.gz  144M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F6; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-15wgEncodeYaleChIPseqRawDataRep2K562bE2f6.fastq.gz  1.2G  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F6; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=371; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-15wgEncodeYaleChIPseqPeaksK562bE2f6.narrowPeak.gz  459K  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F6; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=371; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-03-15wgEncodeYaleChIPseqSignalK562bE2f6.bedGraph4.gz  104M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=E2F6; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=371; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep1K562bGata1.tagAlign.gz  120M  2009-02-27  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=227; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads, PeakSeq 1.0 (fdr 0.001), uncorrected; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep1K562bGata1.fastq.gz  217M  2009-02-27  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=227; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqAlignmentsRep2K562bGata1.tagAlign.gz  235M  2009-02-27  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-1; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=227; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads, PeakSeq 1.0 (fdr 0.001), uncorrected; fragLength=200; view=Alignments; type=tagAlign
      2009-11-27wgEncodeYaleChIPseqRawDataRep2K562bGata1.fastq.gz  342M  2009-02-27  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-1; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=227; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2009-11-27wgEncodeYaleChIPseqRel2SignalK562bGata1.bedGraph4.gz  156M  2009-02-27  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected sparse signals; subId=324; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-05-02; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2009-11-27wgEncodeYaleChIPseqPeaksK562bGata1V2.narrowPeak.gz  114K  2009-02-27  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected start location, pValue and point peak; subId=404; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-06-30; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-06-02wgEncodeYaleChIPseqAlignmentsRep1K562bGata2V2.tagAlign.gz  61M  2009-09-02  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-2; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-06-02wgEncodeYaleChIPseqRawDataRep1K562bGata2.fastq.gz  517M  2009-09-02  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-2; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=460; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-06-02wgEncodeYaleChIPseqAlignmentsRep2K562bGata2V2.tagAlign.gz  191M  2009-09-02  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-2; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-06-02wgEncodeYaleChIPseqRawDataRep2K562bGata2.fastq.gz  550M  2009-09-02  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-2; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=460; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-06-02wgEncodeYaleChIPseqPeaksK562bGata2.narrowPeak.gz  251K  2009-09-02  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-2; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=460; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-06-02wgEncodeYaleChIPseqSignalK562bGata2.bedGraph4.gz  181M  2009-09-02  dataType=ChipSeq; cell=K562b; treatment=None; antibody=GATA-2; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=460; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-03-11wgEncodeYaleChIPseqAlignmentsRep1K562bInputV2.tagAlign.gz  816M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; fragLength=200; view=Alignments; type=tagAlign
      2010-03-11wgEncodeYaleChIPseqRawDataK562bInput.fastq.gz  1.3G  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=K562b/None/Input/UCDavis; subId=335; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq
      2010-03-11wgEncodeYaleChIPseqSignalK562bInput.bedGraph4.gz  411M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=K562b/None/Input/UCDavis; subId=335; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2010-03-15wgEncodeYaleChIPseqAlignmentsRep1K562bSetdb1V2.tagAlign.gz  237M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=SETDB1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-15wgEncodeYaleChIPseqRawDataRep1K562bSetdb1.fastq.gz  1.2G  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=SETDB1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=377; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-15wgEncodeYaleChIPseqAlignmentsRep2K562bSetdb1V2.tagAlign.gz  148M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=SETDB1; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-15wgEncodeYaleChIPseqRawDataRep2K562bSetdb1.fastq.gz  655M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=SETDB1; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=377; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-15wgEncodeYaleChIPseqPeaksK562bSetdb1.narrowPeak.gz  215K  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=SETDB1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=377; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-03-15wgEncodeYaleChIPseqSignalK562bSetdb1.bedGraph4.gz  169M  2009-06-15  dataType=ChipSeq; cell=K562b; treatment=None; antibody=SETDB1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=377; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-03-22wgEncodeYaleChIPseqAlignmentsRep1K562bTr4V2.tagAlign.gz  155M  2009-06-22  dataType=ChipSeq; cell=K562b; treatment=None; antibody=TR4; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-22wgEncodeYaleChIPseqRawDataRep1K562bTr4.fastq.gz  361M  2009-06-22  dataType=ChipSeq; cell=K562b; treatment=None; antibody=TR4; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=380; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-22wgEncodeYaleChIPseqAlignmentsRep2K562bTr4V2.tagAlign.gz  177M  2009-06-22  dataType=ChipSeq; cell=K562b; treatment=None; antibody=TR4; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-22wgEncodeYaleChIPseqRawDataRep2K562bTr4.fastq.gz  465M  2009-06-22  dataType=ChipSeq; cell=K562b; treatment=None; antibody=TR4; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=380; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-22wgEncodeYaleChIPseqPeaksK562bTr4.narrowPeak.gz  19K  2009-06-22  dataType=ChipSeq; cell=K562b; treatment=None; antibody=TR4; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=380; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-03-22wgEncodeYaleChIPseqSignalK562bTr4.bedGraph4.gz  146M  2009-06-22  dataType=ChipSeq; cell=K562b; treatment=None; antibody=TR4; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=380; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein A agarose beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-06-03wgEncodeYaleChIPseqAlignmentsRep1K562bYy1V2.tagAlign.gz  158M  2009-09-03  dataType=ChipSeq; cell=K562b; treatment=None; antibody=YY1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein G magnetic beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-06-03wgEncodeYaleChIPseqRawDataRep1K562bYy1.fastq.gz  495M  2009-09-03  dataType=ChipSeq; cell=K562b; treatment=None; antibody=YY1; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=467; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein G magnetic beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
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      2010-06-03wgEncodeYaleChIPseqRawDataRep2K562bYy1.fastq.gz  457M  2009-09-03  dataType=ChipSeq; cell=K562b; treatment=None; antibody=YY1; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=467; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein G magnetic beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-06-03wgEncodeYaleChIPseqPeaksK562bYy1.narrowPeak.gz  140K  2009-09-03  dataType=ChipSeq; cell=K562b; treatment=None; antibody=YY1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=467; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein G magnetic beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-06-03wgEncodeYaleChIPseqSignalK562bYy1.bedGraph4.gz  138M  2009-09-03  dataType=ChipSeq; cell=K562b; treatment=None; antibody=YY1; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=467; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with protein G magnetic beads,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2009-11-25wgEncodeYaleChIPseqAlignmentsRep1K562bZnf263V2.tagAlign.gz  136M  2009-02-25  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF263; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2009-11-25wgEncodeYaleChIPseqRawDataRep1K562bZnf263.fastq.gz  228M  2009-02-25  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF263; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=205; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2009-11-25wgEncodeYaleChIPseqAlignmentsRep2K562bZnf263V2.tagAlign.gz  142M  2009-02-25  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF263; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2009-11-25wgEncodeYaleChIPseqRawDataRep2K562bZnf263.fastq.gz  228M  2009-02-25  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF263; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=205; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2009-11-25wgEncodeYaleChIPseqRel2SignalK562bZnf263.bedGraph4.gz  132M  2009-02-25  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF263; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected sparse signals; subId=324; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-05-02; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2009-11-25wgEncodeYaleChIPseqPeaksK562bZnf263V2.narrowPeak.gz  527K  2009-02-25  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF263; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; submittedDataVersion=V2 - corrected start location, pValue and point peak; subId=404; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-06-30; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-10-04wgEncodeYaleChIPseqAlignmentsRep1K562bZnf274.tagAlign.gz  170M  2010-01-05  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF274; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=860; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-10-04wgEncodeYaleChIPseqRawDataRep1K562bZnf274.fastq.gz  798M  2010-01-05  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF274; control=UCDavis; replicate=1; setType=exp; controlId=K562b/None/Input/UCDavis; subId=860; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-10-04wgEncodeYaleChIPseqAlignmentsRep2K562bZnf274.tagAlign.gz  237M  2010-01-05  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF274; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=860; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-10-04wgEncodeYaleChIPseqRawDataRep2K562bZnf274.fastq.gz  1.4G  2010-01-05  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF274; control=UCDavis; replicate=2; setType=exp; controlId=K562b/None/Input/UCDavis; subId=860; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-10-04wgEncodeYaleChIPseqPeaksK562bZnf274.narrowPeak.gz  15K  2010-01-05  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF274; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=860; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-10-04wgEncodeYaleChIPseqSignalK562bZnf274.bedGraph4.gz  194M  2010-01-05  dataType=ChipSeq; cell=K562b; treatment=None; antibody=ZNF274; control=UCDavis; setType=exp; controlId=K562b/None/Input/UCDavis; subId=860; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-07-28wgEncodeYaleChIPseqAlignmentsRep1Mcf7Hae2f1.tagAlign.gz  357M  2009-10-28  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=HA-E2F1; control=UCDavis; replicate=1; setType=exp; controlId=MCF-7/None/Input/UCDavis; subId=757; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-07-28wgEncodeYaleChIPseqRawDataRep1Mcf7Hae2f1.fastq.gz  957M  2009-10-28  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=HA-E2F1; control=UCDavis; replicate=1; setType=exp; controlId=MCF-7/None/Input/UCDavis; subId=757; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-07-28wgEncodeYaleChIPseqAlignmentsRep2Mcf7Hae2f1.tagAlign.gz  291M  2009-10-28  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=HA-E2F1; control=UCDavis; replicate=2; setType=exp; controlId=MCF-7/None/Input/UCDavis; subId=757; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-07-28wgEncodeYaleChIPseqRawDataRep2Mcf7Hae2f1.fastq.gz  929M  2009-10-28  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=HA-E2F1; control=UCDavis; replicate=2; setType=exp; controlId=MCF-7/None/Input/UCDavis; subId=757; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-07-28wgEncodeYaleChIPseqPeaksMcf7Hae2f1.narrowPeak.gz  529K  2009-10-28  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=HA-E2F1; control=UCDavis; setType=exp; controlId=MCF-7/None/Input/UCDavis; subId=757; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-07-28wgEncodeYaleChIPseqSignalMcf7Hae2f1.bedGraph4.gz  284M  2009-10-28  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=HA-E2F1; control=UCDavis; setType=exp; controlId=MCF-7/None/Input/UCDavis; subId=757; dataVersion=ENCODE Sep 2009 Freeze; grant=Snyder; lab=UCD; labVersion=MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep1Mcf7Input.tagAlign.gz  245M  2010-01-15  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=Input; control=UCDavis; replicate=1; setType=input; controlId=MCF-7/None/Input/UCDavis; subId=1090; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=MCF7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, crosslinks were reversed at 67*C overnight and Input was Qiagen purified,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep1Mcf7Input.fastq.gz  576M  2010-01-15  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=Input; control=UCDavis; replicate=1; setType=input; controlId=MCF-7/None/Input/UCDavis; subId=1090; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=MCF7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, crosslinks were reversed at 67*C overnight and Input was Qiagen purified,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqAlignmentsRep2Mcf7Input.tagAlign.gz  323M  2010-01-15  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=Input; control=UCDavis; replicate=2; setType=input; controlId=MCF-7/None/Input/UCDavis; subId=1090; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=MCF7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, crosslinks were reversed at 67*C overnight and Input was Qiagen purified,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Alignments; type=tagAlign
      2010-10-15wgEncodeYaleChIPseqRawDataRep2Mcf7Input.fastq.gz  777M  2010-01-15  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=Input; control=UCDavis; replicate=2; setType=input; controlId=MCF-7/None/Input/UCDavis; subId=1090; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=MCF7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, crosslinks were reversed at 67*C overnight and Input was Qiagen purified,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-10-15wgEncodeYaleChIPseqSignalMcf7Input.bedGraph4.gz  260M  2010-01-15  dataType=ChipSeq; cell=MCF-7; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=MCF-7/None/Input/UCDavis; subId=1090; dataVersion=ENCODE Jan 2010 Freeze; grant=Snyder; lab=UCD; labVersion=MCF7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, crosslinks were reversed at 67*C overnight and Input was Qiagen purified,; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2009-07-31wgEncodeYaleChIPseqRel2SignalNb4Input.bedGraph4.gz  79M  2008-10-31  dataType=ChipSeq; cell=NB4; treatment=None; antibody=Input; control=std; setType=input; controlId=NB4/None/Input/std; submittedDataVersion=V2 - corrected sparse signals; subId=279; dataVersion=ENCODE July 2009 Freeze; dateResubmitted=2009-03-20; grant=Snyder; lab=Yale; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
      2009-11-25wgEncodeYaleChIPseqAlignmentsNb4Input.tagAlign.gz  195M  2009-02-25  dataType=ChipSeq; cell=NB4; treatment=None; antibody=Input; control=std; setType=input; controlId=NB4/None/Input/std; subId=107; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
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      2009-07-31wgEncodeYaleChIPseqAlignmentsRep1Nb4Pol2.tagAlign.gz  192M  2008-10-31  dataType=ChipSeq; cell=NB4; treatment=None; antibody=Pol2; control=std; replicate=1; setType=exp; controlId=NB4/None/Input/std; subId=18; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
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      2009-07-31wgEncodeYaleChIPseqAlignmentsRep2Nb4Pol2.tagAlign.gz  117M  2008-10-31  dataType=ChipSeq; cell=NB4; treatment=None; antibody=Pol2; control=std; replicate=2; setType=exp; controlId=NB4/None/Input/std; subId=18; dataVersion=ENCODE Feb 2009 Freeze; grant=Snyder; lab=Yale; labVersion=uncorrected; fragLength=200; view=Alignments; type=tagAlign
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      2009-07-31wgEncodeYaleChIPseqRawDataRep3Nb4Pol2.fastq.gz  121M  2008-10-31  dataType=ChipSeq; cell=NB4; treatment=None; antibody=Pol2; control=std; replicate=3; setType=exp; controlId=NB4/None/Input/std; subId=18; dataVersion=ENCODE Nov 2008 Freeze; grant=Snyder; lab=Yale; view=RawData; type=fastq
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      2010-03-08wgEncodeYaleChIPseqAlignmentsRep1Nt2d1InputV2.tagAlign.gz  251M  2009-06-08  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; replicate=1; setType=input; controlId=NT2-D1/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; fragLength=200; view=Alignments; type=tagAlign
      2010-03-08wgEncodeYaleChIPseqAlignmentsRep2Nt2d1InputV2.tagAlign.gz  215M  2009-06-08  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; replicate=2; setType=input; controlId=NT2-D1/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; fragLength=200; view=Alignments; type=tagAlign
      2010-03-08wgEncodeYaleChIPseqSignalNt2d1Input.bedGraph4.gz  211M  2009-06-08  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; setType=input; controlId=NT2-D1/None/Input/UCDavis; subId=346; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; softwareVersion=PeakSeq1.0; view=Signal; type=bedGraph4
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      2010-03-05wgEncodeYaleChIPseqAlignmentsRep1Nt2d1Suz12V2.tagAlign.gz  198M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=SUZ12; control=UCDavis; replicate=1; setType=exp; controlId=NT2-D1/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-05wgEncodeYaleChIPseqRawDataRep1Nt2d1Suz12.fastq.gz  659M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=SUZ12; control=UCDavis; replicate=1; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=347; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-05wgEncodeYaleChIPseqAlignmentsRep2Nt2d1Suz12V2.tagAlign.gz  109M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=SUZ12; control=UCDavis; replicate=2; setType=exp; controlId=NT2-D1/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-05wgEncodeYaleChIPseqRawDataRep2Nt2d1Suz12.fastq.gz  622M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=SUZ12; control=UCDavis; replicate=2; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=347; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-05wgEncodeYaleChIPseqPeaksNt2d1Suz12.narrowPeak.gz  111K  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=SUZ12; control=UCDavis; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=347; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-03-05wgEncodeYaleChIPseqSignalNt2d1Suz12.bedGraph4.gz  133M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=SUZ12; control=UCDavis; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=347; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
      2010-03-05wgEncodeYaleChIPseqAlignmentsRep1Nt2d1Yy1V2.tagAlign.gz  214M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=YY1; control=UCDavis; replicate=1; setType=exp; controlId=NT2-D1/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-05wgEncodeYaleChIPseqRawDataRep1Nt2d1Yy1.fastq.gz  736M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=YY1; control=UCDavis; replicate=1; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=348; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-05wgEncodeYaleChIPseqAlignmentsRep2Nt2d1Yy1V2.tagAlign.gz  146M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=YY1; control=UCDavis; replicate=2; setType=exp; controlId=NT2-D1/None/Input/UCDavis; submittedDataVersion=V2 - corrected locations; subId=634; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-22; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); fragLength=200; view=Alignments; type=tagAlign
      2010-03-05wgEncodeYaleChIPseqRawDataRep2Nt2d1Yy1.fastq.gz  756M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=YY1; control=UCDavis; replicate=2; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=348; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=RawData; type=fastq
      2010-03-05wgEncodeYaleChIPseqPeaksNt2d1Yy1.narrowPeak.gz  221K  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=YY1; control=UCDavis; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=348; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Peaks; type=narrowPeak
      2010-03-05wgEncodeYaleChIPseqSignalNt2d1Yy1.bedGraph4.gz  158M  2009-06-05  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=YY1; control=UCDavis; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=348; dataVersion=ENCODE July 2009 Freeze; grant=Snyder; lab=UCD; labVersion=Fragmented using Bioruptor, precipitated with StaphA; softwareVersion=PeakSeq1.0 (fdr 0.001); view=Signal; type=bedGraph4
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