This directory contains reciprocal-best netted chains for mm10-cavApe1.

 - mm10.cavApe1.rbest.net.gz: mm10-referenced recip.best net to cavApe1.
 - mm10.cavApe1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to cavApe1 through the recip.best net.

 - cavApe1.mm10.rbest.net.gz: cavApe1-referenced recip.best net.
 - cavApe1.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.cavApe1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2018-01-09 22:31    -   
      md5sum.txt                  2018-01-09 14:39  244   
      cavApe1.mm10.rbest.chain.gz 2018-01-09 14:37   31M  
      mm10.cavApe1.rbest.chain.gz 2018-01-09 14:38   31M  
      cavApe1.mm10.rbest.net.gz   2018-01-09 14:37   56M  
      mm10.cavApe1.rbest.net.gz   2018-01-09 14:39   59M