This directory contains reciprocal-best netted chains for mm10-susScr11.

 - mm10.susScr11.rbest.net.gz: mm10-referenced recip.best net to susScr11.
 - mm10.susScr11.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to susScr11 through the recip.best net.

 - susScr11.mm10.rbest.net.gz: susScr11-referenced recip.best net.
 - susScr11.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.susScr11.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                         Last modified      Size  Description
      Parent Directory                                  -   
      axtRBestNet/                 2017-08-02 07:47    -   
      md5sum.txt                   2017-08-02 00:17  248   
      mm10.susScr11.rbest.net.gz   2017-08-02 00:17   81M  
      mm10.susScr11.rbest.chain.gz 2017-08-02 00:16   53M  
      susScr11.mm10.rbest.chain.gz 2017-08-02 00:15   53M  
      susScr11.mm10.rbest.net.gz   2017-08-02 00:14  108M