track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624215.1_A_J_v1ExpressionStar
    shortLabel GCA_001624215.1_A_J_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624215.1_A_J_v1_brain
        longLabel GCA_001624215.1_A_J_v1 brain Expression
        shortLabel GCA_001624215.1_A_J_v1_brain_Expression
        parent GCA_001624215.1_A_J_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624215.1_A_J_v1_liver
        longLabel GCA_001624215.1_A_J_v1 liver Expression
        shortLabel GCA_001624215.1_A_J_v1_liver_Expression
        parent GCA_001624215.1_A_J_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

    track GCA_001624215.1_A_J_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624215.1_A_J_v1_brain_ERR033008
        longLabel GCA_001624215.1_A_J_v1 brain RNASeq Alignments ERR033008
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_ERR033008
        bigDataUrl rnaSeqData/brain.ERR033008.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_brain_ERR033009
        longLabel GCA_001624215.1_A_J_v1 brain RNASeq Alignments ERR033009
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_ERR033009
        bigDataUrl rnaSeqData/brain.ERR033009.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826300
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826300
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826300
        bigDataUrl rnaSeqData/liver.SRR826300.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826301
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826301
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826301
        bigDataUrl rnaSeqData/liver.SRR826301.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826302
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826302
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826302
        bigDataUrl rnaSeqData/liver.SRR826302.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826303
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826303
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826303
        bigDataUrl rnaSeqData/liver.SRR826303.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826304
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826304
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826304
        bigDataUrl rnaSeqData/liver.SRR826304.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826305
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826305
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826305
        bigDataUrl rnaSeqData/liver.SRR826305.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826306
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826306
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826306
        bigDataUrl rnaSeqData/liver.SRR826306.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826307
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826307
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826307
        bigDataUrl rnaSeqData/liver.SRR826307.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826308
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826308
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826308
        bigDataUrl rnaSeqData/liver.SRR826308.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826309
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826309
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826309
        bigDataUrl rnaSeqData/liver.SRR826309.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826310
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826310
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826310
        bigDataUrl rnaSeqData/liver.SRR826310.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826311
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826311
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826311
        bigDataUrl rnaSeqData/liver.SRR826311.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826312
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826312
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826312
        bigDataUrl rnaSeqData/liver.SRR826312.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826313
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826313
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826313
        bigDataUrl rnaSeqData/liver.SRR826313.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826314
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826314
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826314
        bigDataUrl rnaSeqData/liver.SRR826314.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624215.1_A_J_v1_liver_SRR826315
        longLabel GCA_001624215.1_A_J_v1 liver RNASeq Alignments SRR826315
        shortLabel GCA_001624215.1_A_J_v1_RNASeq_SRR826315
        bigDataUrl rnaSeqData/liver.SRR826315.sortedByCoord.out.bam
        parent GCA_001624215.1_A_J_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624215.1_A_J_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624215.1_A_J_v1_brain_SpliceJunctions
        longLabel GCA_001624215.1_A_J_v1 brain STAR Splice Junctions
        shortLabel GCA_001624215.1_A_J_v1_brain_Splice_Junctions
        parent GCA_001624215.1_A_J_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624215.1_A_J_v1_liver_SpliceJunctions
        longLabel GCA_001624215.1_A_J_v1 liver STAR Splice Junctions
        shortLabel GCA_001624215.1_A_J_v1_liver_Splice_Junctions
        parent GCA_001624215.1_A_J_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver