track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver spleen=spleen
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624445.1_CAST_EiJ_v1ExpressionStar
    shortLabel GCA_001624445.1_CAST_EiJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624445.1_CAST_EiJ_v1_brain
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain Expression
        shortLabel GCA_001624445.1_CAST_EiJ_v1_brain_Expression
        parent GCA_001624445.1_CAST_EiJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624445.1_CAST_EiJ_v1_liver
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver Expression
        shortLabel GCA_001624445.1_CAST_EiJ_v1_liver_Expression
        parent GCA_001624445.1_CAST_EiJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

        track wigStar_GCA_001624445.1_CAST_EiJ_v1_spleen
        longLabel GCA_001624445.1_CAST_EiJ_v1 spleen Expression
        shortLabel GCA_001624445.1_CAST_EiJ_v1_spleen_Expression
        parent GCA_001624445.1_CAST_EiJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/spleen.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=spleen

    track GCA_001624445.1_CAST_EiJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_ERR032997
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments ERR032997
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_ERR032997
        bigDataUrl rnaSeqData/brain.ERR032997.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_ERR032998
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments ERR032998
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_ERR032998
        bigDataUrl rnaSeqData/brain.ERR032998.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1920268
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1920268
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1920268
        bigDataUrl rnaSeqData/brain.SRR1920268.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1920269
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1920269
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1920269
        bigDataUrl rnaSeqData/brain.SRR1920269.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1920270
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1920270
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1920270
        bigDataUrl rnaSeqData/brain.SRR1920270.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1921023
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1921023
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1921023
        bigDataUrl rnaSeqData/brain.SRR1921023.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1924463
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1924463
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1924463
        bigDataUrl rnaSeqData/brain.SRR1924463.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1924464
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1924464
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1924464
        bigDataUrl rnaSeqData/brain.SRR1924464.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_brain_SRR1924465
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain RNASeq Alignments SRR1924465
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR1924465
        bigDataUrl rnaSeqData/brain.SRR1924465.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_16493_7_3
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments 16493_7_3
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_16493_7_3
        bigDataUrl rnaSeqData/liver.16493_7_3.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_ERR120692
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments ERR120692
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_ERR120692
        bigDataUrl rnaSeqData/liver.ERR120692.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_ERR120694
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments ERR120694
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_ERR120694
        bigDataUrl rnaSeqData/liver.ERR120694.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826332
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826332
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826332
        bigDataUrl rnaSeqData/liver.SRR826332.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826333
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826333
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826333
        bigDataUrl rnaSeqData/liver.SRR826333.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826334
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826334
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826334
        bigDataUrl rnaSeqData/liver.SRR826334.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826335
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826335
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826335
        bigDataUrl rnaSeqData/liver.SRR826335.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826336
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826336
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826336
        bigDataUrl rnaSeqData/liver.SRR826336.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826337
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826337
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826337
        bigDataUrl rnaSeqData/liver.SRR826337.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826338
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826338
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826338
        bigDataUrl rnaSeqData/liver.SRR826338.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826339
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826339
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826339
        bigDataUrl rnaSeqData/liver.SRR826339.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826340
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826340
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826340
        bigDataUrl rnaSeqData/liver.SRR826340.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826341
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826341
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826341
        bigDataUrl rnaSeqData/liver.SRR826341.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826342
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826342
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826342
        bigDataUrl rnaSeqData/liver.SRR826342.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826343
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826343
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826343
        bigDataUrl rnaSeqData/liver.SRR826343.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826344
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826344
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826344
        bigDataUrl rnaSeqData/liver.SRR826344.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826345
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826345
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826345
        bigDataUrl rnaSeqData/liver.SRR826345.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826346
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826346
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826346
        bigDataUrl rnaSeqData/liver.SRR826346.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_liver_SRR826347
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver RNASeq Alignments SRR826347
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_SRR826347
        bigDataUrl rnaSeqData/liver.SRR826347.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624445.1_CAST_EiJ_v1_spleen_16493_7_6
        longLabel GCA_001624445.1_CAST_EiJ_v1 spleen RNASeq Alignments 16493_7_6
        shortLabel GCA_001624445.1_CAST_EiJ_v1_RNASeq_16493_7_6
        bigDataUrl rnaSeqData/spleen.16493_7_6.sortedByCoord.out.bam
        parent GCA_001624445.1_CAST_EiJ_v1_Alignments off
        subGroups view=alignment tissue=spleen
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624445.1_CAST_EiJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624445.1_CAST_EiJ_v1_brain_SpliceJunctions
        longLabel GCA_001624445.1_CAST_EiJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001624445.1_CAST_EiJ_v1_brain_Splice_Junctions
        parent GCA_001624445.1_CAST_EiJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624445.1_CAST_EiJ_v1_liver_SpliceJunctions
        longLabel GCA_001624445.1_CAST_EiJ_v1 liver STAR Splice Junctions
        shortLabel GCA_001624445.1_CAST_EiJ_v1_liver_Splice_Junctions
        parent GCA_001624445.1_CAST_EiJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver

        track GCA_001624445.1_CAST_EiJ_v1_spleen_SpliceJunctions
        longLabel GCA_001624445.1_CAST_EiJ_v1 spleen STAR Splice Junctions
        shortLabel GCA_001624445.1_CAST_EiJ_v1_spleen_Splice_Junctions
        parent GCA_001624445.1_CAST_EiJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/spleen.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=spleen