track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001632525.1_BALB_cJ_v1ExpressionStar
    shortLabel GCA_001632525.1_BALB_cJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001632525.1_BALB_cJ_v1_brain
        longLabel GCA_001632525.1_BALB_cJ_v1 brain Expression
        shortLabel GCA_001632525.1_BALB_cJ_v1_brain_Expression
        parent GCA_001632525.1_BALB_cJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

    track GCA_001632525.1_BALB_cJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001632525.1_BALB_cJ_v1_brain_ERR033005
        longLabel GCA_001632525.1_BALB_cJ_v1 brain RNASeq Alignments ERR033005
        shortLabel GCA_001632525.1_BALB_cJ_v1_RNASeq_ERR033005
        bigDataUrl rnaSeqData/brain.ERR033005.sortedByCoord.out.bam
        parent GCA_001632525.1_BALB_cJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001632525.1_BALB_cJ_v1_brain_ERR033014
        longLabel GCA_001632525.1_BALB_cJ_v1 brain RNASeq Alignments ERR033014
        shortLabel GCA_001632525.1_BALB_cJ_v1_RNASeq_ERR033014
        bigDataUrl rnaSeqData/brain.ERR033014.sortedByCoord.out.bam
        parent GCA_001632525.1_BALB_cJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001632525.1_BALB_cJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001632525.1_BALB_cJ_v1_brain_SpliceJunctions
        longLabel GCA_001632525.1_BALB_cJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001632525.1_BALB_cJ_v1_brain_Splice_Junctions
        parent GCA_001632525.1_BALB_cJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain