Description

Patch release 6 is the sixth patch release for the GRCh38 assembly. Patch release 6 includes all contents that were in patch release 5. This is a minor release of GRCh38 that does not disrupt the coordinate system in the reference sequence GRCh38.

Total patch scaffolds in this patch release: 66
Patch scaffolds of type FIX: 41
Patch scaffolds of type NOVEL: 25

Definitions

Patch release 6 summary table

GRCh38 reference
location
NCBI Entrez
nucleotide record
GRC region
name
sequence
name
patch
type
chr1:12818488-13312803 chr1_KQ031383v1_fix PRAME_REGION_1 HG1342_HG2282_PATCHfix-patch
chr1:17157487-17460319 chr1_KN538361v1_fix REGION200 HG2095_PATCHfix-patch
chr1:23237486-23579959 chr1_KQ458383v1_alt REGION228 HSCHR1_4_CTG3novel-patch
chr1:26512383-26678582 chr1_KN196473v1_fix REGION189 HG2058_PATCHfix-patch
chr1:41250328-41436604 chr1_KN196472v1_fix FOXO6 HG986_PATCHfix-patch
chr1:103909381-104045121 chr1_KQ458382v1_alt REGION229 HSCHR1_3_CTG3novel-patch
chr1:112909422-113029606 chr1_KN196474v1_fix REGION190 HG2104_PATCHfix-patch
chr1:210220259-210677001 chr1_KN538360v1_fix REGION199 HG1832_PATCHfix-patch
chr1:235360200-235568613 chr1_KQ458384v1_alt TBCE HSCHR1_5_CTG32_1novel-patch
chr10:38918270-39338430 chr10_KN538367v1_fix REGION205 HG2244_HG2245_PATCHfix-patch
chr10:65503225-65684914 chr10_KQ090020v1_alt REGION216 HSCHR10_1_CTG6novel-patch
chr10:74797382-75073121 chr10_KN196480v1_fix REGION195 HG2191_PATCHfix-patch
chr10:87784179-88048756 chr10_KQ090021v1_fix PTEN HG2334_PATCHfix-patch
chr10:124109957-124195365 chr10_KN538366v1_fix REGION204 HG2242_HG2243_PATCHfix-patch
chr10:131588434-131607480 chr10_KN538365v1_fix REGION203 HG2241_PATCHfix-patch
chr11:937258-1207515 chr11_KQ759759v1_fix MUCIN_REGION_1 HG107_PATCHfix-patch
chr11:7779133-7972558 chr11_KN538368v1_alt OLFACTORY_REGION_2 HSCHR11_1_CTG1_2novel-patch
chr11:92232311-92410192 chr11_KQ090022v1_fix REGION215 HG2116_PATCHfix-patch
chr11:118978401-119087276 chr11_KN196481v1_fix SLC37A4 HG2217_PATCHfix-patch
chr12:1033530-1135924 chr12_KQ090023v1_alt REGION217 HSCHR12_2_CTG1novel-patch
chr12:12031003-12572035 chr12_KN538369v1_fix REGION206 HG1362_PATCHfix-patch
chr12:17717409-17928910 chr12_KN196482v1_fix REGION196 HG23_PATCHfix-patch
chr12:86768210-87083988 chr12_KQ759760v1_fix REGION232 HG2063_PATCHfix-patch
chr12:122057735-122145576 chr12_KN538370v1_fix REGION207 HG2247_PATCHfix-patch
chr13:18171249-18358106 chr13_KN538372v1_fix BAGE5 HG2291_PATCHfix-patch
chr13:84294441-84452423 chr13_KQ090024v1_alt REGION218 HSCHR13_1_CTG7novel-patch
chr13:86269523-86292877 chr13_KN196483v1_fix REGION197 HG2216_PATCHfix-patch
chr13:100900735-101049613 chr13_KN538373v1_fix REGION208 HG2249_PATCHfix-patch
chr13:108604134-108722945 chr13_KQ090025v1_alt REGION219 HSCHR13_1_CTG8novel-patch
chr13:113936976-114147229 chr13_KN538371v1_fix REGION209 HG2288_HG2289_PATCHfix-patch
chr15:27865714-32946929 chr15_KQ031389v1_alt REGION25 HSCHR15_6_CTG8novel-patch
chr15_KI270905v1_alt:1-5161414 chr15_KN538374v1_fix REGION1A HG2139_PATCHfix-patch
chr16:2820536-2873621 chr16_KQ090026v1_alt REGION221 HSCHR16_5_CTG1novel-patch
chr16:71137292-71399966 chr16_KQ090027v1_alt REGION220 HSCHR16_4_CTG3_1novel-patch
chr16:75930096-76091406 chr16_KQ031390v1_alt REGION213 HSCHR16_3_CTG3_1novel-patch
chr18:22388680-22588100 chr18_KQ458385v1_alt REGION230 HSCHR18_5_CTG1_1novel-patch
chr18:48514982-48918117 chr18_KQ090028v1_fix CTIF HG2213_PATCHfix-patch
chr19:38590365-38995717 chr19_KQ458386v1_fix REGION231 HG26_PATCHfix-patch
chr19:39740125-40095774 chr19_KN196484v1_fix FCGBP HG2021_PATCHfix-patch
chr2:88891175-89330679 chr2_KQ031384v1_fix IGK HG2290_PATCHfix-patch
chr2:233054663-233420161 chr2_KN538363v1_fix REGION201 HG2232_PATCHfix-patch
chr2:239696904-239905046 chr2_KN538362v1_fix REGION202 HG2233_PATCHfix-patch
chr22:42077656-42253758 chr22_KN196485v1_alt CYP2D6 HSCHR22_4_CTG1novel-patch
chr22:42077656-42253758 chr22_KN196486v1_alt CYP2D6 HSCHR22_5_CTG1novel-patch
chr22:42077656-42253758 chr22_KQ458387v1_alt CYP2D6 HSCHR22_6_CTG1novel-patch
chr22:42077656-42253758 chr22_KQ458388v1_alt CYP2D6 HSCHR22_7_CTG1novel-patch
chr22:42077656-42253758 chr22_KQ759761v1_alt CYP2D6 HSCHR22_8_CTG1novel-patch
chr22:50663907-50764925 chr22_KQ759762v1_fix SHANK3 HG1311_PATCHfix-patch
chr3:44474647-44925818 chr3_KN196475v1_fix REGION192 HG2066_PATCHfix-patch
chr3:66023201-66396803 chr3_KQ031385v1_fix SLC25A26 HG2235_PATCHfix-patch
chr3:72325441-72740399 chr3_KN538364v1_fix RYBP HG126_PATCHfix-patch
chr3:90528825-90699772 chr3_KQ031386v1_fix REGION210 HG2237_PATCHfix-patch
chr3:91247723-91553319 chr3_KN196476v1_fix REGION191 HG2022_PATCHfix-patch
chr4:14931450-15019028 chr4_KQ090013v1_alt REGION222 HSCHR4_2_CTG4novel-patch
chr4:65880454-66040277 chr4_KQ090014v1_alt REGION223 HSCHR4_8_CTG12novel-patch
chr4:69959865-70191926 chr4_KQ090015v1_alt REGION224 HSCHR4_9_CTG12novel-patch
chr5:21098347-21230960 chr5_KN196477v1_alt REGION193 HSCHR5_7_CTG1novel-patch
chr6:13101650-13179113 chr6_KQ090017v1_alt REGION225 HSCHR6_1_CTG10novel-patch
chr6:61123605-61470683 chr6_KQ031387v1_fix REGION211 HG1651_PATCHfix-patch
chr6:67533466-67796090 chr6_KN196478v1_fix REGION194 HG2128_PATCHfix-patch
chr6:82140389-82375901 chr6_KQ090016v1_fix REGION214 HG2072_PATCHfix-patch
chr7:154422352-154602937 chr7_KQ031388v1_fix REGION212 HG2239_PATCHfix-patch
chr9:8983671-9142737 chr9_KQ090018v1_alt REGION226 HSCHR9_1_CTG6novel-patch
chr9:24949709-25079413 chr9_KQ090019v1_alt REGION227 HSCHR9_1_CTG7novel-patch
chr9:133174055-133504070 chr9_KN196479v1_fix ABO HG2030_PATCHfix-patch
chrY:56821510-56887902 chrY_KN196487v1_fix REGION198 HG2062_PATCHfix-patch

References

Data obtained from the Genome Reference Consortium:   FTP.