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Macaca mulatta (J.R. Kaplan) |
UCSC Genome Browser assembly ID: rheMac8
Sequencing/Assembly provider ID: Baylor College of Medicine Genome Sequencing Center
Assembly date: Nov. 2015
Accession ID: GCF_000772875.2
NCBI Genome information:
NCBI genome/215 (Macaca mulatta)
NCBI Assembly information:
NCBI assembly/2715158 (Baylor College of Medicine Genome Sequencing Center)
BioProject information: NCBI Bioproject: 12537
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Several naming conventions based on correspondences to human chromosomes have been applied to rhesus macaque chromosomes in different publications. The following table from Zimin et al. summarizes the correspondences between human chromosomes and chimpanzee, gorilla, orangutan and various rhesus macaque chromosome names. The rheMac8 assembly uses chromosome names from the rightmost column (Rogers et al.).
Human | Chimpanzee | Gorilla | Orangutan | Zimin et al./ MacaM | Wienberg et al. | Rogers et al./ rheMac8 |
---|---|---|---|---|---|---|
1 | 1 | 1 | 1 | 1 | 1 | 1 |
2p+ | 2a | 2a | 2a | 2a | 15 | 13 |
2q- | 2b | 2b | 2b | 2b | 9 | 12 |
3 | 3 | 3 | 3 | 3 | 3 | 2 |
4 | 4 | 4 | 4 | 4 | 4 | 5 |
5 | 5 | 5 | 5 | 5 | 5 | 6 |
6 | 6 | 6 | 6 | 6 | 6 | 4 |
7/21 | 7/21 | 7/21 | 7/21 | 7 | 2 | 3 |
8 | 8 | 8 | 8 | 8 | 8 | 8 |
9 | 9 | 9 | 9 | 9 | 14 | 15 |
10 | 10 | 10 | 10 | 10 | 10 | 9 |
11 | 11 | 11 | 11 | 11 | 11 | 14 |
12 | 12 | 12 | 12 | 12 | 12 | 11 |
13 | 13 | 13 | 13 | 13 | 16 | 17 |
14/15 | 14/15 | 14/15 | 14/15 | 14 | 7 | 7 |
20/22 | 20/22 | 20/22 | 20/22 | 15 | 13 | 10 |
16 | 16 | 16 | 16 | 16 | 20 | 20 |
17 | 17 | 17 | 17 | 17 | 17 | 16 |
18 | 18 | 18 | 18 | 18 | 18 | 18 |
19 | 19 | 19 | 19 | 19 | 19 | 19 |
X | X | X | X | X | X | X |
Y | Y | Y | Y | Y | Y | Y |
References:
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, et al. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biol Direct. 2014 Oct 14;9(1):20. doi: 10.1186/1745-6150-9-20.
Rogers J, Garcia R, Shelledy W, Kaplan J, Arya A, Johnson Z, Bergstrom M, Novakowski L, Nair P, Vinson A, Newman D, Heckman G, Cameron J. An initial genetic linkage map of the rhesus macaque (Macaca mulatta) genome using human microsatellite loci. Genomics. 2006;87:30-38. doi: 10.1016/j.ygeno.2005.10.004.
Wienberg J, Stanyon R, Jauch A, Cremer T. Homologies in human and Macaca fuscata chromosomes revealed by in situ suppression hybridization with human chromosome specific DNA libraries. Chromosoma. 1992;101:265-270. doi: 10.1007/BF00346004.