Mouse strain assembly hub - 2017-05-03

Add this hub to genome browsers:


To attach this hub to other genome browsers not on the above list, from the blue navigation bar, go to:
  My Data -> Track Hubs
select the My Hubs tab and enter this URL:
  http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt
in the entry form, press the Add Hub button to add the hub.

This will go to the gateway page where you will find the mouse strain
hub at the top of the phylogenetic tree diagram on the left of the page.


The links go to data resources.

UCSC genome
name
Ensembl genome
browser
biosample/
NCBI data
accession/
NCBI data
assembly name/
hub data
Jackson Laboratory/
strain data
129S1_SvImJMus musculus SAMN04489811GCA_001624185.1129S1_SvImJ_v1002448
A_JMus musculus SAMN04489813GCA_001624215.1A_J_v1000646
AKR_JMus musculus SAMN04489815GCA_001624295.1AKR_J_v1000648
CAST_EiJMus musculus castaneus SAMN04489822GCA_001624445.1CAST_EiJ_v1000928
CBA_JMus musculus SAMN04489823GCA_001624475.1CBA_J_v1000656
DBA_2JMus musculus SAMN04489824GCA_001624505.1DBA_2J_v1000671
FVB_NJMus musculus SAMN04489825GCA_001624535.1FVB_NJ_v1001800
NOD_ShiLtJMus musculus SAMN04489827GCA_001624675.1NOD_ShiLtJ_v1001976
NZO_HlLtJMus musculus SAMN04489828GCA_001624745.1NZO_HlLtJ_v1002105
PWK_PhJMus musculus musculus SAMN04489829GCA_001624775.1PWK_PhJ_v1003715
WSB_EiJMus musculus domesticus SAMN04489831GCA_001624835.1WSB_EiJ_v1001145
SPRET_EiJMus spretus SAMN04489830GCA_001624865.1SPRET_EiJ_v1001146
BALB_cJMus musculus SAMN04489816GCA_001632525.1BALB_cJ_v1000651
C57BL_6NJMus musculus SAMN04489821GCA_001632555.1C57BL_6NJ_v1005304
C3H_HeJMus musculus SAMN04489818GCA_001632575.1C3H_HeJ_v1000659
LP_JMus musculus SAMN04489826GCA_001632615.1LP_J_v1000676