0.2 augustusGene,136 0.5 augustusGene,138 est,709 intronEst,745 mrna,425 xenoRefGene,264 000 est,669 gcPercent,30 intronEst,705 000-base gcPercent,7 1 augustusGene,310 chainDm2,563 est,792 genscan,227 intronEst,803 mrna,509 netDm2,75 netDm2,206 netDm2,540 xenoRefGene,387 100 augustusGene,134 chainDm2,531 microsat,70 netDm2,508 1000-2000 augustusGene,161 103-7 chainDm2,564 netDm2,541 10973072 rmsk,325 11484-9 chainDm2,533 netDm2,510 115-26 chainDm2,495 11928468 chainDm2,497 11932250 est,816 mrna,533 xenoRefGene,317 12 est,812 intronEst,819 mrna,529 xenoRefGene,313 12529312 chainDm2,566 netDm2,543 127-163 genscan,206 13 chainDm2,562 netDm2,539 14500911 chainDm2,535 netDm2,512 14534192 augustusGene,340 14681350 est,798 mrna,515 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,236 15608248 xenoRefGene,393 16 rmsk,321 18218656 augustusGene,315 19 augustusGene,335 1990 blastDm1FB,185 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 microsat,66 microsat,132 netDm2,109 netDm2,114 simpleRepeat,92 20 chainDm2,532 gcPercent,6 gcPercent,29 netDm2,509 2000 rmsk,100 rmsk,319 2002 chainDm2,494 est,810 intronEst,817 mrna,527 xenoRefGene,311 2003 augustusGene,333 chainDm2,528 chainDm2,560 netDm2,505 netDm2,537 2004 blastDm1FB,41 chainDm2,7 chainDm2,78 est,790 intronEst,801 mrna,507 netDm2,7 netDm2,58 2005 xenoRefGene,385 2008 augustusGene,308 2013 est,765 mrna,482 2014 xenoRefGene,352 215 blastDm1FB,188 2231712 blastDm1FB,192 23193287 est,772 mrna,489 24 augustusGene,311 blastDm1FB,39 24259432 xenoRefGene,359 25 genscan,225 xenoRefGene,271 268 genscan,226 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastDm1FB,189 est,481 est,534 est,588 intronEst,108 intronEst,517 intronEst,570 intronEst,624 microsat,68 netDm2,121 3.1 augustusGene,24 30 chainDm2,530 netDm2,507 32 est,793 intronEst,78 intronEst,804 mrna,510 33 xenoRefGene,388 4 est,813 intronEst,820 mrna,530 xenoRefGene,314 403-10 blastDm1FB,190 41 est,767 mrna,484 418-20 rmsk,323 42 xenoRefGene,354 5 augustusGene,312 blastDm1FB,187 est,478 est,519 est,545 intronEst,514 intronEst,555 intronEst,581 500 est,35 intronEst,46 573-80 microsat,133 simpleRepeat,93 60 blastDm1FB,121 blastDm1FB,133 blastDm1FB,141 637-44 augustusGene,313 656-64 est,814 intronEst,821 mrna,531 xenoRefGene,315 750 est,668 intronEst,704 78-94 genscan,228 9 rmsk,322 9149143 genscan,230 96 est,716 intronEst,752 mrna,432 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 blastDm1FB,44 blastDm1FB,86 blastDm1FB,96 chainDm2,21 chainDm2,26 chainDm2,50 chainDm2,111 chainDm2,123 chainDm2,166 chainDm2,171 chainDm2,303 chainDm2,347 chainDm2,352 chainDm2,354 chainDm2,358 chainDm2,362 chainDm2,385 chainDm2,394 chainDm2,503 chainDm2,527 chainDm2,543 est,1 est,4 est,18 est,118 est,135 est,170 est,196 est,269 est,388 est,468 est,472 est,598 est,624 est,632 est,646 est,685 est,704 gap,59 gap,63 gap,89 gcPercent,28 genscan,102 genscan,132 gold,17 gold,50 gold,108 gold,114 intronEst,3 intronEst,19 intronEst,111 intronEst,120 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,504 intronEst,508 intronEst,634 intronEst,660 intronEst,668 intronEst,682 intronEst,721 intronEst,740 microsat,53 microsat,119 mrna,1 mrna,4 mrna,19 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,388 mrna,401 mrna,420 netDm2,23 netDm2,31 netDm2,141 netDm2,151 netDm2,155 netDm2,222 netDm2,239 netDm2,242 netDm2,292 netDm2,306 netDm2,312 netDm2,318 netDm2,322 netDm2,325 netDm2,353 netDm2,480 netDm2,504 netDm2,520 rmsk,36 rmsk,56 rmsk,196 rmsk,308 simpleRepeat,79 xenoRefGene,24 xenoRefGene,224 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 ab augustusGene,3 augustusGene,16 abbreviated chainDm2,311 about est,34 est,414 genscan,127 intronEst,45 intronEst,478 microsat,98 mrna,351 netDm2,147 netDm2,160 netDm2,342 simpleRepeat,59 xenoRefGene,178 above netDm2,219 netDm2,231 netDm2,251 abundance chainDm2,147 acad chainDm2,523 netDm2,500 acceptor genscan,32 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 acid blastDm1FB,75 acids blastDm1FB,147 est,763 est,788 intronEst,799 microsat,126 mrna,480 mrna,505 simpleRepeat,86 xenoRefGene,350 xenoRefGene,383 additional rmsk,254 advice chainDm2,423 chainDm2,455 netDm2,442 affine chainDm2,36 after netDm2,400 ag intronEst,85 against est,653 intronEst,37 intronEst,689 mrna,344 mrna,393 xenoRefGene,222 al xenoRefGene,341 algorithm augustusGene,130 align est,683 intronEst,719 aligned blastDm1FB,58 blastDm1FB,83 chainDm2,314 est,652 est,688 intronEst,36 intronEst,149 intronEst,688 intronEst,724 mrna,392 mrna,404 xenoRefGene,221 xenoRefGene,243 aligning chainDm2,100 chainDm2,246 chainDm2,276 est,400 intronEst,464 alignment blastDm1FB,179 chainDm2,223 est,58 est,423 est,429 est,441 est,693 est,806 intronEst,136 intronEst,729 intronEst,813 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netDm2,11 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 blastDm1FB,21 chainDm2,12 chainDm2,24 chainDm2,325 chainDm2,328 chainDm2,345 chainDm2,373 chainDm2,490 chainDm2,555 est,16 est,702 intronEst,17 intronEst,738 mrna,17 mrna,418 netDm2,134 netDm2,258 netDm2,532 rmsk,265 xenoRefGene,257 all augustusGene,207 chainDm2,343 chainDm2,366 est,192 est,246 est,301 est,396 est,488 gap,75 gold,126 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,524 mrna,138 mrna,192 mrna,247 rmsk,65 allowed est,664 intronEst,700 allows augustusGene,168 chainDm2,31 est,391 intronEst,455 mrna,337 xenoRefGene,149 alone augustusGene,33 already netDm2,303 also blastDm1FB,149 chainDm2,42 est,273 est,381 est,432 est,601 gold,35 intronEst,337 intronEst,445 intronEst,637 mrna,219 mrna,327 mrna,371 alter est,129 intronEst,204 mrna,75 alternating gold,80 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 altschul blastDm1FB,167 alus rmsk,131 always gold,111 amino blastDm1FB,74 blastDm1FB,146 amount rmsk,185 amsterdam genscan,201 an blastDm1FB,103 chainDm2,119 chainDm2,146 chainDm2,152 est,450 est,497 est,580 intronEst,61 intronEst,486 intronEst,533 intronEst,616 rmsk,311 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastDm1FB,13 blastDm1FB,28 blastDm1FB,137 chainDm2,49 chainDm2,64 chainDm2,195 chainDm2,201 chainDm2,213 chainDm2,226 chainDm2,308 chainDm2,334 chainDm2,351 chainDm2,360 chainDm2,419 chainDm2,434 chainDm2,459 chainDm2,465 chainDm2,476 chainDm2,513 chainDm2,518 est,10 est,26 est,48 est,88 est,132 est,293 est,457 est,471 est,479 est,607 est,713 gap,5 gap,44 gap,62 gcPercent,10 gcPercent,23 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,27 gold,44 gold,82 gold,96 gold,102 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,493 intronEst,507 intronEst,515 intronEst,643 intronEst,749 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 netDm2,41 netDm2,66 netDm2,123 netDm2,269 netDm2,347 netDm2,379 netDm2,390 netDm2,399 netDm2,409 netDm2,438 netDm2,453 netDm2,460 netDm2,471 netDm2,490 netDm2,495 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 simpleRepeat,9 simpleRepeat,42 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annotated rmsk,67 annotation netDm2,53 rmsk,38 annotations genscan,120 xenoRefGene,188 any est,316 est,550 intronEst,380 intronEst,586 mrna,262 apply est,188 intronEst,263 mrna,134 appropriate xenoRefGene,112 apr chainDm2,6 chainDm2,77 est,811 genscan,224 intronEst,818 mrna,528 netDm2,6 netDm2,57 xenoRefGene,312 are augustusGene,27 chainDm2,107 chainDm2,162 chainDm2,178 chainDm2,189 chainDm2,235 chainDm2,401 est,30 est,67 est,149 est,159 gap,32 gcPercent,38 genscan,25 genscan,160 gold,52 gold,74 gold,91 gold,131 intronEst,41 intronEst,224 intronEst,234 intronEst,759 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netDm2,77 netDm2,98 netDm2,105 netDm2,188 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas gcPercent,56 arian chainDm2,432 netDm2,451 rmsk,16 rmsk,287 as augustusGene,77 augustusGene,79 blastDm1FB,37 est,597 gap,34 genscan,35 genscan,37 gold,37 intronEst,633 microsat,21 netDm2,150 netDm2,190 netDm2,213 netDm2,228 netDm2,296 netDm2,351 rmsk,53 rmsk,55 assembled gold,24 assemblies augustusGene,196 augustusGene,237 chainDm2,234 assembly augustusGene,197 chainDm2,83 chainDm2,117 chainDm2,125 gap,14 gap,79 gold,1 gold,2 gold,14 netDm2,63 associated est,110 gcPercent,53 intronEst,185 rmsk,194 simpleRepeat,51 astashyn xenoRefGene,328 at blastDm1FB,139 chainDm2,408 chainDm2,443 chainDm2,448 est,265 est,549 est,594 est,714 est,730 gcPercent,62 intronEst,67 intronEst,76 intronEst,101 intronEst,585 intronEst,630 intronEst,750 intronEst,769 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netDm2,107 netDm2,291 netDm2,414 netDm2,427 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 attempt est,581 intronEst,617 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 axt chainDm2,332 axtchain chainDm2,340 chainDm2,341 chainDm2,439 axts chainDm2,337 back chainDm2,322 baertsch augustusGene,290 chainDm2,475 chainDm2,500 chainDm2,546 netDm2,470 netDm2,477 netDm2,523 base est,386 est,420 est,697 est,705 est,717 gcPercent,31 intronEst,450 intronEst,733 intronEst,741 intronEst,753 mrna,359 mrna,413 mrna,421 mrna,433 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 based augustusGene,28 chainDm2,237 chainDm2,263 genscan,26 gold,53 bases est,36 est,397 est,670 gcPercent,26 intronEst,47 intronEst,79 intronEst,461 intronEst,706 basic blastDm1FB,177 bdgp chainDm2,8 chainDm2,79 netDm2,8 netDm2,59 be augustusGene,99 chainDm2,59 est,109 est,122 est,144 est,253 est,263 est,274 est,305 est,323 est,333 est,382 est,433 est,529 est,637 gap,25 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,565 intronEst,673 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 netDm2,117 rmsk,235 rmsk,257 simpleRepeat,44 xenoRefGene,88 bears est,94 intronEst,169 because est,629 intronEst,665 been chainDm2,297 intronEst,8 rmsk,70 before est,566 intronEst,602 netDm2,398 below chainDm2,393 genscan,154 genscan,168 rmsk,105 benson est,747 est,775 intronEst,786 microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best blastDm1FB,114 est,712 intronEst,748 mrna,428 netDm2,20 netDm2,200 xenoRefGene,267 better est,74 mrna,55 between chainDm2,346 est,17 est,85 gap,85 gold,47 gold,88 gold,93 intronEst,18 intronEst,160 mrna,18 netDm2,345 biocomput chainDm2,493 bioinformatics augustusGene,307 augustusGene,332 biol blastDm1FB,184 genscan,222 biology genscan,200 birds augustusGene,203 black gap,35 gap,70 blast blastDm1FB,158 blastDm1FB,165 blast-like est,805 intronEst,812 mrna,522 xenoRefGene,306 blastz chainDm2,316 chainDm2,405 chainDm2,557 netDm2,257 netDm2,424 netDm2,534 blat blastDm1FB,66 blastDm1FB,193 est,657 est,666 est,803 intronEst,693 intronEst,702 intronEst,810 mrna,398 mrna,520 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainDm2,370 chainDm2,380 gold,98 gold,125 both chainDm2,46 chainDm2,68 chainDm2,137 netDm2,388 xenoRefGene,126 xenoRefGene,197 boundaries blastDm1FB,71 gold,73 box chainDm2,287 est,208 est,219 est,259 gap,71 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netDm2,142 xenoRefGene,216 boxes chainDm2,88 chainDm2,98 est,179 gap,36 intronEst,254 mrna,125 netDm2,131 branch-point augustusGene,55 brian blastDm1FB,213 bridge gold,123 bridged gap,60 brown gold,83 gold,97 xenoRefGene,322 browser chainDm2,463 est,226 est,350 est,367 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,296 mrna,313 netDm2,458 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastDm1FB,108 est,486 est,543 est,596 intronEst,522 intronEst,579 intronEst,632 netDm2,233 rmsk,270 button chainDm2,258 by augustusGene,147 augustusGene,266 augustusGene,282 blastDm1FB,9 blastDm1FB,196 blastDm1FB,209 chainDm2,61 chainDm2,91 chainDm2,228 chainDm2,291 chainDm2,383 chainDm2,412 chainDm2,431 chainDm2,451 chainDm2,473 est,268 est,496 est,665 est,743 genscan,20 genscan,88 genscan,121 gold,76 intronEst,87 intronEst,532 intronEst,701 intronEst,782 microsat,110 mrna,214 mrna,460 netDm2,101 netDm2,119 netDm2,305 netDm2,421 netDm2,431 netDm2,450 netDm2,468 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c gcPercent,24 genscan,181 genscan,208 caenorhabditis augustusGene,212 california chainDm2,447 netDm2,418 can augustusGene,98 chainDm2,41 chainDm2,58 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 simpleRepeat,35 xenoRefGene,87 canonical intronEst,70 cap-selected est,559 intronEst,595 cap-selection est,568 intronEst,604 cases chainDm2,159 netDm2,88 categorized netDm2,189 cauldron chainDm2,510 netDm2,487 cause netDm2,171 caused chainDm2,60 cavanaugh est,749 mrna,466 cdna augustusGene,299 est,461 est,464 intronEst,497 intronEst,500 cells est,456 intronEst,492 cerevisiae augustusGene,222 certain rmsk,260 chain chainDm2,3 chainDm2,85 netDm2,25 netDm2,94 netDm2,149 netDm2,265 netDm2,308 netDm2,319 netDm2,327 netDm2,332 netDm2,355 netDm2,364 chained blastDm1FB,10 blastDm1FB,100 chainDm2,11 chainnet netDm2,282 netDm2,407 chains blastDm1FB,116 blastDm1FB,129 chainDm2,164 chainDm2,174 chainDm2,185 chainDm2,231 chainDm2,270 chainDm2,377 chainDm2,391 chainDm2,400 chainDm2,470 netDm2,76 netDm2,81 netDm2,103 netDm2,115 netDm2,122 netDm2,179 netDm2,253 netDm2,274 netDm2,289 netDm2,349 netDm2,380 change est,125 intronEst,200 mrna,71 characteristic est,330 intronEst,394 mrna,276 check chainDm2,253 chiaromonte chainDm2,480 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 est,286 est,325 intronEst,350 intronEst,389 mrna,232 mrna,271 chosen est,348 intronEst,412 mrna,294 chr4 chainDm2,285 chris genscan,21 genscan,172 chromosome chainDm2,211 chainDm2,240 chainDm2,265 chainDm2,273 chainDm2,283 chainDm2,292 chainDm2,356 netDm2,212 netDm2,227 netDm2,243 chromosome-based chainDm2,233 circle rmsk,172 clark est,751 mrna,468 class rmsk,169 classes rmsk,121 click intronEst,481 netDm2,139 netDm2,153 xenoRefGene,110 xenoRefGene,214 clone gap,91 cloned est,466 intronEst,502 closed gap,26 closest augustusGene,241 cm xenoRefGene,333 coding simpleRepeat,38 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 collection xenoRefGene,33 color chainDm2,261 est,131 est,327 genscan,86 genscan,96 intronEst,206 intronEst,391 mrna,77 mrna,273 rmsk,177 xenoRefGene,58 xenoRefGene,169 coloration gold,84 colored chainDm2,236 est,434 mrna,373 coloring chainDm2,252 est,421 genscan,116 mrna,333 mrna,360 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 combination est,289 intronEst,353 mrna,235 combined rmsk,202 comparative chainDm2,13 netDm2,13 compare mrna,342 xenoRefGene,155 comparison genscan,109 complete genscan,213 completely xenoRefGene,137 complex chainDm2,130 complexity rmsk,30 rmsk,153 components gold,127 compositional genscan,41 computational genscan,196 conditional augustusGene,118 configuration chainDm2,227 est,49 genscan,64 genscan,84 intronEst,127 mrna,30 netDm2,67 rmsk,109 xenoRefGene,46 configured est,383 intronEst,447 mrna,329 xenoRefGene,89 considerable est,640 intronEst,676 considered intronEst,59 consult est,220 intronEst,295 mrna,166 contained netDm2,381 contains blastDm1FB,19 est,245 intronEst,320 mrna,191 xenoRefGene,142 contamination est,628 intronEst,93 intronEst,664 content augustusGene,71 gcPercent,37 gcPercent,47 gcPercent,50 contig gold,72 gold,141 contigs gap,48 gap,87 gold,26 gold,30 gold,48 gold,65 gold,89 gold,106 controls xenoRefGene,92 conventions chainDm2,225 est,47 est,55 genscan,62 genscan,70 intronEst,125 intronEst,133 mrna,28 mrna,36 netDm2,65 rmsk,107 xenoRefGene,44 xenoRefGene,52 converted chainDm2,330 copies microsat,80 corresponds est,228 intronEst,303 mrna,174 cover est,561 intronEst,597 covered netDm2,304 created microsat,89 rmsk,13 credits augustusGene,247 blastDm1FB,151 chainDm2,404 est,725 gcPercent,57 genscan,169 intronEst,764 microsat,104 mrna,441 netDm2,405 rmsk,284 simpleRepeat,66 xenoRefGene,280 criteria est,303 est,321 est,359 est,377 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,249 mrna,267 mrna,305 mrna,323 cruz chainDm2,450 netDm2,420 culex augustusGene,220 curated xenoRefGene,296 xenoRefGene,373 current est,163 intronEst,238 mrna,109 rmsk,216 currently-viewed gold,70 cytosine gcPercent,25 d augustusGene,293 blastDm1FB,1 blastDm1FB,4 blastDm1FB,34 blastDm1FB,53 blastDm1FB,61 chainDm2,1 chainDm2,4 chainDm2,19 chainDm2,47 chainDm2,71 chainDm2,115 chainDm2,301 chainDm2,349 chainDm2,507 chainDm2,551 genscan,192 netDm2,1 netDm2,4 netDm2,21 netDm2,47 netDm2,484 netDm2,528 d23-6 est,796 intronEst,807 mrna,513 d36-42 est,770 mrna,487 d501-4 xenoRefGene,391 d756-63 xenoRefGene,357 da est,748 est,776 intronEst,787 mrna,465 mrna,493 dark xenoRefGene,75 darker intronEst,142 darkly est,69 gcPercent,41 mrna,50 data est,735 intronEst,774 microsat,47 mrna,452 rmsk,229 rmsk,246 xenoRefGene,36 xenoRefGene,290 database chainDm2,466 est,768 est,794 intronEst,805 mrna,485 mrna,511 netDm2,461 rmsk,309 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,615 est,742 intronEst,97 intronEst,651 intronEst,781 mrna,459 david chainDm2,460 de augustusGene,303 default chainDm2,229 xenoRefGene,103 xenoRefGene,196 degraded est,530 intronEst,566 degree est,625 intronEst,661 deletion chainDm2,112 chainDm2,512 est,443 mrna,382 netDm2,489 rmsk,190 deletions chainDm2,66 chainDm2,145 dense est,61 gold,59 intronEst,139 mrna,42 dependencies genscan,183 depicts gap,10 gold,63 deposited est,602 intronEst,638 derived netDm2,255 described genscan,161 netDm2,262 rmsk,96 describes augustusGene,226 description augustusGene,12 blastDm1FB,16 chainDm2,15 est,12 est,112 gap,7 gcPercent,12 genscan,10 genscan,77 genscan,133 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 netDm2,15 netDm2,267 rmsk,9 simpleRepeat,11 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 desired est,288 intronEst,352 mrna,234 detail genscan,164 detailed augustusGene,90 netDm2,145 netDm2,164 rmsk,37 determining netDm2,169 developed chainDm2,407 chainDm2,442 netDm2,413 netDm2,426 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 differ est,406 intronEst,470 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 genscan,54 netDm2,244 rmsk,120 direction est,81 est,99 intronEst,156 intronEst,174 discarded chainDm2,397 xenoRefGene,238 discover blastDm1FB,69 diseases simpleRepeat,54 display chainDm2,203 chainDm2,224 chainDm2,267 chainDm2,464 est,46 est,54 est,62 est,127 est,154 est,184 est,329 est,353 est,369 est,385 est,395 est,444 genscan,61 genscan,69 genscan,104 gold,121 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 netDm2,64 netDm2,70 netDm2,129 netDm2,158 netDm2,187 netDm2,459 rmsk,106 rmsk,112 rmsk,182 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainDm2,402 intronEst,760 netDm2,106 netDm2,203 xenoRefGene,204 displays chainDm2,87 microsat,13 rmsk,116 simpleRepeat,14 dissertation augustusGene,105 distant est,585 intronEst,621 distinguished gold,75 distributions augustusGene,83 genscan,42 diverged netDm2,404 dj blastDm1FB,176 est,756 est,780 intronEst,791 mrna,473 mrna,497 dl est,784 intronEst,795 mrna,501 dm1 blastDm1FB,7 dm2 chainDm2,10 chainDm2,81 chainDm2,82 netDm2,10 netDm2,61 netDm2,62 dna genscan,219 microsat,123 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 done augustusGene,265 augustusGene,281 donor genscan,31 double chainDm2,95 chainDm2,126 double-lined chainDm2,187 double-sided chainDm2,55 downloads rmsk,76 dr xenoRefGene,367 draft gap,90 gold,13 drastically intronEst,99 drawn gap,67 gcPercent,39 gold,117 drosophila augustusGene,213 due chainDm2,109 chainDm2,180 chainDm2,192 duplication chainDm2,511 netDm2,488 during gap,27 netDm2,309 dynamic chainDm2,386 e.g chainDm2,284 each blastDm1FB,80 chainDm2,221 est,217 genscan,99 intronEst,292 mrna,163 editors genscan,195 effect est,600 intronEst,636 either chainDm2,92 gap,50 electronic rmsk,312 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 eliminate est,673 intronEst,709 eliminating intronEst,105 elsevier genscan,202 emerged est,570 intronEst,606 netDm2,315 end est,520 est,538 est,548 est,589 intronEst,556 intronEst,574 intronEst,584 intronEst,625 ends intronEst,86 enter chainDm2,278 entered est,254 est,264 intronEst,329 mrna,200 mrna,210 ermolaeva xenoRefGene,330 especially est,155 intronEst,230 mrna,101 est est,11 est,87 est,183 est,451 est,614 est,635 est,687 est,733 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,487 intronEst,650 intronEst,671 intronEst,723 intronEst,772 mrna,11 ests est,3 est,6 est,23 est,29 est,193 est,298 est,313 est,354 est,372 est,490 est,535 est,546 est,648 est,675 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,526 intronEst,571 intronEst,582 intronEst,684 intronEst,711 et xenoRefGene,340 even est,609 est,616 intronEst,645 intronEst,652 every netDm2,27 evidence gold,57 intronEst,65 evolution chainDm2,508 netDm2,485 ew blastDm1FB,174 est,760 mrna,477 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 exception gap,19 exclude est,134 est,339 est,345 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,285 mrna,291 exist gold,87 netDm2,90 exon augustusGene,86 blastDm1FB,70 blastDm1FB,81 blastDm1FB,115 blastDm1FB,128 exons blastDm1FB,98 genscan,44 expansions simpleRepeat,48 expense intronEst,103 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 extend rmsk,267 extended blastDm1FB,131 extending blastDm1FB,117 f chainDm2,481 xenoRefGene,327 facilitate genscan,106 factor est,231 intronEst,306 mrna,177 faq augustusGene,45 genscan,60 rmsk,280 farrell xenoRefGene,332 feature chainDm2,207 est,389 genscan,129 intronEst,453 mrna,335 xenoRefGene,147 xenoRefGene,180 features xenoRefGene,83 fed chainDm2,338 field augustusGene,120 fill netDm2,339 netDm2,372 filled netDm2,99 netDm2,118 netDm2,321 netDm2,394 filter chainDm2,290 est,119 est,168 est,181 est,190 est,237 est,278 est,302 est,320 est,358 est,376 genscan,82 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 filtered est,341 intronEst,405 mrna,287 filtering est,280 intronEst,344 mrna,226 finally blastDm1FB,93 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netDm2,38 finishing gap,29 first blastDm1FB,48 netDm2,279 fish augustusGene,201 fit netDm2,299 flag rmsk,253 flags rmsk,255 fly augustusGene,214 flybase blastDm1FB,36 blastDm1FB,55 following genscan,81 follows est,52 genscan,67 intronEst,130 mrna,33 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastDm1FB,161 chainDm2,220 est,56 est,114 est,185 est,216 est,238 est,411 est,422 est,435 est,483 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,519 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 netDm2,26 netDm2,37 netDm2,42 netDm2,176 rmsk,25 rmsk,259 rmsk,281 rmsk,291 simpleRepeat,30 simpleRepeat,56 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 format chainDm2,333 forth netDm2,125 found augustusGene,100 chainDm2,382 mrna,416 four netDm2,193 fragment gap,82 gold,133 fragments est,42 gold,4 intronEst,53 from augustusGene,19 blastDm1FB,25 blastDm1FB,51 chainDm2,75 chainDm2,142 chainDm2,424 chainDm2,456 est,407 est,455 est,476 est,586 est,604 est,649 est,732 genscan,15 gold,3 intronEst,471 intronEst,491 intronEst,512 intronEst,622 intronEst,640 intronEst,685 intronEst,771 mrna,7 mrna,449 netDm2,55 netDm2,245 netDm2,256 netDm2,443 rmsk,86 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 full chainDm2,202 netDm2,69 rmsk,111 furthermore augustusGene,64 g gcPercent,21 microsat,115 simpleRepeat,75 gambiae augustusGene,219 gap blastDm1FB,106 blastDm1FB,110 chainDm2,27 chainDm2,37 chainDm2,154 est,430 gap,1 gap,2 gap,54 gap,61 gap,74 gold,45 mrna,369 netDm2,162 netDm2,174 netDm2,197 netDm2,215 netDm2,230 netDm2,247 netDm2,323 gapless chainDm2,368 gaps chainDm2,33 chainDm2,44 chainDm2,57 chainDm2,105 chainDm2,131 chainDm2,177 chainDm2,188 gap,11 gap,16 gap,23 gap,31 gap,76 gap,84 gold,86 netDm2,89 netDm2,111 netDm2,138 netDm2,378 netDm2,384 gary microsat,111 simpleRepeat,71 gc gcPercent,1 gcPercent,4 gcPercent,14 gcPercent,36 gcPercent,46 gcPercent,49 genbank est,25 est,650 est,761 est,785 intronEst,26 intronEst,686 intronEst,796 mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastDm1FB,14 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gcPercent,55 general est,532 intronEst,568 generally rmsk,72 generate est,643 intronEst,679 rmsk,227 rmsk,300 generated chainDm2,472 gcPercent,61 rmsk,248 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastDm1FB,12 blastDm1FB,30 est,45 genscan,2 genscan,6 genscan,59 intronEst,56 simpleRepeat,41 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet rmsk,318 genetic rmsk,88 genome augustusGene,31 blastDm1FB,63 chainDm2,173 chainDm2,558 est,28 est,655 est,808 gold,19 gold,139 intronEst,29 intronEst,39 intronEst,691 intronEst,815 mrna,26 mrna,395 mrna,525 netDm2,33 netDm2,44 netDm2,277 netDm2,535 xenoRefGene,226 xenoRefGene,309 genomes chainDm2,312 chainDm2,520 netDm2,497 xenoRefGene,378 genomic chainDm2,23 chainDm2,488 est,91 est,409 est,610 est,721 genscan,92 genscan,218 intronEst,166 intronEst,473 intronEst,646 intronEst,757 mrna,346 mrna,437 netDm2,181 xenoRefGene,164 xenoRefGene,276 genomics chainDm2,14 netDm2,14 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,107 giri rmsk,92 rmsk,290 gish blastDm1FB,169 go est,417 est,438 genscan,113 mrna,354 mrna,377 xenoRefGene,181 gold gold,81 gold,95 gr xenoRefGene,323 graphical gold,120 netDm2,128 rmsk,181 group augustusGene,198 augustusGene,235 chainDm2,359 grouped gold,32 groups augustusGene,194 gt intronEst,84 guanine gcPercent,22 hardison chainDm2,426 chainDm2,548 netDm2,445 netDm2,525 hart xenoRefGene,334 has est,117 intronEst,83 intronEst,192 mrna,63 rmsk,212 xenoRefGene,68 haussler augustusGene,292 chainDm2,461 chainDm2,506 chainDm2,550 netDm2,483 netDm2,527 have chainDm2,296 gap,80 intronEst,7 rmsk,69 having est,694 est,703 intronEst,730 intronEst,739 mrna,410 mrna,419 xenoRefGene,249 xenoRefGene,258 helpful est,145 intronEst,220 mrna,91 here chainDm2,403 intronEst,482 heterochromatic gap,22 hiatt xenoRefGene,324 hidden augustusGene,324 hide xenoRefGene,192 hierarchy netDm2,314 high gcPercent,35 gcPercent,48 higher netDm2,346 rmsk,200 higher-level netDm2,363 higher-scoring netDm2,307 netDm2,326 highest est,696 intronEst,732 mrna,412 xenoRefGene,251 highest-scoring netDm2,80 netDm2,273 highlight est,336 intronEst,400 mrna,282 highlighted est,306 est,324 intronEst,370 intronEst,388 mrna,252 mrna,270 highly microsat,40 hinrichs chainDm2,502 netDm2,479 his chainDm2,435 netDm2,454 honeybee1 augustusGene,217 hou chainDm2,414 netDm2,433 how netDm2,374 netDm2,391 human augustusGene,205 augustusGene,210 augustusGene,276 chainDm2,519 genscan,217 netDm2,496 human-mouse chainDm2,554 netDm2,531 hybridizes est,500 intronEst,536 i est,754 est,778 intronEst,789 mrna,471 mrna,495 i.e gap,83 intronEst,72 identified blastDm1FB,31 chainDm2,430 est,700 intronEst,736 netDm2,449 xenoRefGene,255 identity est,698 est,706 est,718 intronEst,734 intronEst,742 intronEst,754 microsat,71 mrna,414 mrna,422 mrna,434 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 if est,279 est,291 est,307 est,343 est,360 gap,40 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 xenoRefGene,205 ii215-25 augustusGene,338 imperfect simpleRepeat,19 improve augustusGene,302 in augustusGene,101 blastDm1FB,32 chainDm2,45 chainDm2,67 chainDm2,113 chainDm2,121 chainDm2,136 chainDm2,155 chainDm2,158 chainDm2,198 chainDm2,215 chainDm2,244 chainDm2,274 chainDm2,286 chainDm2,515 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,276 est,398 est,531 est,579 est,689 gap,12 gap,37 gap,77 gcPercent,5 gcPercent,27 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,58 gold,118 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,567 intronEst,615 intronEst,725 intronEst,761 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 netDm2,51 netDm2,68 netDm2,86 netDm2,91 netDm2,100 netDm2,112 netDm2,126 netDm2,168 netDm2,185 netDm2,216 netDm2,234 netDm2,248 netDm2,275 netDm2,316 netDm2,324 netDm2,340 netDm2,373 netDm2,385 netDm2,492 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 xenoRefGene,244 include est,133 est,338 est,362 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,284 mrna,308 rmsk,130 rmsk,143 included augustusGene,160 blastDm1FB,127 blastDm1FB,150 includes rmsk,168 including est,7 intronEst,116 rmsk,159 indels microsat,74 indicate chainDm2,104 chainDm2,209 est,71 mrna,52 indicates est,79 intronEst,144 intronEst,154 xenoRefGene,60 individual chainDm2,206 netDm2,183 information augustusGene,36 blastDm1FB,163 est,78 est,413 est,437 genscan,51 genscan,126 intronEst,153 intronEst,477 microsat,97 mrna,350 mrna,376 netDm2,146 netDm2,159 netDm2,165 netDm2,341 rmsk,89 rmsk,283 simpleRepeat,58 xenoRefGene,177 initiate rmsk,275 initio augustusGene,4 augustusGene,17 inserted chainDm2,298 netDm2,397 insertion chainDm2,120 est,442 mrna,381 rmsk,193 instead xenoRefGene,120 institute rmsk,91 intergenic genscan,47 international est,739 intronEst,778 mrna,456 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainDm2,323 chainDm2,331 chainDm2,339 chainDm2,357 est,255 est,460 est,467 est,612 gold,25 gold,33 intronEst,330 intronEst,496 intronEst,503 intronEst,648 mrna,201 netDm2,300 intractable gap,21 intron augustusGene,88 augustusGene,330 est,662 intronEst,71 intronEst,698 introns est,679 genscan,45 intronEst,715 inv netDm2,221 inversions chainDm2,63 chainDm2,143 inverted netDm2,359 involve chainDm2,133 is blastDm1FB,153 chainDm2,74 est,295 est,311 est,347 est,364 est,453 est,465 est,474 est,494 est,623 est,667 gap,55 gap,58 gap,66 gcPercent,51 gold,110 gold,116 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,489 intronEst,501 intronEst,510 intronEst,530 intronEst,659 intronEst,703 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 netDm2,35 netDm2,54 netDm2,166 rmsk,95 simpleRepeat,28 isolated est,454 intronEst,490 issue est,769 est,795 intronEst,806 mrna,486 mrna,512 xenoRefGene,356 xenoRefGene,390 it chainDm2,40 est,93 est,107 est,516 gap,57 genscan,143 intronEst,168 intronEst,182 intronEst,552 netDm2,34 netDm2,220 netDm2,232 item xenoRefGene,77 items est,65 est,138 est,148 est,342 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,288 netDm2,184 xenoRefGene,104 j blastDm1FB,182 est,758 est,782 genscan,220 intronEst,793 mrna,475 mrna,499 rmsk,99 rmsk,305 xenoRefGene,335 jan chainDm2,561 est,766 est,791 intronEst,802 microsat,129 mrna,483 mrna,508 netDm2,538 simpleRepeat,89 xenoRefGene,353 xenoRefGene,386 jim blastDm1FB,197 blastDm1FB,210 chainDm2,452 chainDm2,477 netDm2,422 netDm2,472 joined chainDm2,89 journal rmsk,313 july blastDm1FB,40 jurka rmsk,98 rmsk,304 k augustusGene,268 est,752 mrna,469 karlin genscan,148 genscan,209 karsch-mizrachi est,753 est,777 intronEst,788 mrna,470 mrna,494 kasif genscan,193 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainDm2,363 chainDm2,390 kent blastDm1FB,198 blastDm1FB,211 chainDm2,453 chainDm2,478 chainDm2,498 chainDm2,540 est,801 intronEst,808 mrna,518 netDm2,423 netDm2,473 netDm2,475 netDm2,517 xenoRefGene,303 kept est,724 mrna,440 xenoRefGene,279 km xenoRefGene,339 known blastDm1FB,29 gap,56 gold,36 gold,112 xenoRefGene,15 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled xenoRefGene,106 labeling est,387 intronEst,451 labels xenoRefGene,78 landrum xenoRefGene,336 largely chainDm2,108 larger intronEst,146 largest netDm2,79 least blastDm1FB,140 est,715 intronEst,68 intronEst,77 intronEst,751 microsat,29 microsat,78 mrna,431 xenoRefGene,270 length augustusGene,82 est,38 est,663 genscan,39 intronEst,49 intronEst,81 intronEst,699 less xenoRefGene,234 level est,707 intronEst,91 intronEst,743 mrna,423 netDm2,74 netDm2,108 netDm2,113 netDm2,120 netDm2,178 netDm2,205 netDm2,218 netDm2,250 rmsk,175 xenoRefGene,62 xenoRefGene,262 libraries est,560 intronEst,596 rmsk,224 rmsk,297 library rmsk,83 light xenoRefGene,71 lighter rmsk,207 likely augustusGene,111 microsat,17 line gap,65 gold,115 netDm2,156 rmsk,136 line-up netDm2,223 line-ups netDm2,208 lineage-specific chainDm2,427 netDm2,446 lines chainDm2,96 chainDm2,103 chainDm2,127 netDm2,136 lipman blastDm1FB,175 est,755 est,779 intronEst,790 mrna,472 mrna,496 list est,212 intronEst,287 mrna,158 local blastDm1FB,178 chainDm2,62 chainDm2,149 located simpleRepeat,21 location chainDm2,214 locations gap,3 logic est,290 intronEst,354 mrna,236 long est,678 intronEst,714 rmsk,132 rmsk,137 longer chainDm2,32 longest netDm2,201 low gcPercent,45 rmsk,29 rmsk,152 lower netDm2,177 lower-level netDm2,348 netDm2,354 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 est,750 mrna,467 made netDm2,467 maglott xenoRefGene,366 make blastDm1FB,78 est,449 est,515 gold,67 intronEst,485 intronEst,551 makes chainDm2,361 mammalian xenoRefGene,346 many est,147 intronEst,106 intronEst,222 mrna,93 netDm2,87 map chainDm2,242 mapped augustusGene,298 blastDm1FB,8 mapping gap,4 gcPercent,9 gold,5 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark est,536 intronEst,572 markers microsat,23 markov augustusGene,325 masked rmsk,71 match chainDm2,219 est,84 est,300 est,315 est,356 est,374 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,246 mrna,261 mrna,302 mrna,320 netDm2,202 netDm2,240 matched blastDm1FB,138 matches est,72 mrna,53 matching chainDm2,222 est,90 intronEst,165 mature est,506 intronEst,542 maximally chainDm2,375 maximum blastDm1FB,105 est,661 intronEst,697 maxtracks augustusGene,139 may chainDm2,140 est,143 est,262 est,272 est,380 est,431 est,511 est,513 est,525 est,527 est,547 est,672 intronEst,218 intronEst,336 intronEst,444 intronEst,547 intronEst,549 intronEst,561 intronEst,563 intronEst,583 intronEst,708 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 netDm2,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 mcgarvey xenoRefGene,338 mdash est,485 est,489 intronEst,521 intronEst,525 medium xenoRefGene,73 mel blastDm1FB,2 chainDm2,2 est,2 mrna,2 netDm2,2 melanogaster blastDm1FB,5 blastDm1FB,35 blastDm1FB,54 blastDm1FB,62 chainDm2,5 chainDm2,20 chainDm2,48 chainDm2,72 chainDm2,116 chainDm2,302 chainDm2,350 netDm2,5 netDm2,22 netDm2,48 mellifera augustusGene,216 blastDm1FB,45 blastDm1FB,87 blastDm1FB,97 chainDm2,22 chainDm2,51 chainDm2,124 chainDm2,172 chainDm2,304 chainDm2,355 est,5 est,19 est,647 gold,18 intronEst,4 intronEst,20 intronEst,121 intronEst,683 mrna,5 mrna,20 mrna,389 netDm2,24 netDm2,32 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 menu xenoRefGene,174 methods augustusGene,46 blastDm1FB,47 chainDm2,293 est,447 genscan,130 genscan,197 intronEst,483 microsat,45 mrna,386 netDm2,252 netDm2,261 rmsk,210 simpleRepeat,55 xenoRefGene,217 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,681 intronEst,183 intronEst,717 miller blastDm1FB,171 chainDm2,421 chainDm2,458 chainDm2,484 chainDm2,504 chainDm2,552 netDm2,440 netDm2,481 netDm2,529 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainDm2,413 netDm2,432 mismatch rmsk,188 mj xenoRefGene,337 mode est,63 est,128 gold,60 intronEst,141 intronEst,203 mrna,44 mrna,74 netDm2,71 rmsk,113 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modes chainDm2,204 modified rmsk,57 mol blastDm1FB,183 genscan,221 molecular genscan,199 more augustusGene,35 blastDm1FB,119 blastDm1FB,162 chainDm2,129 chainDm2,190 est,68 est,175 est,282 est,412 est,436 gcPercent,40 genscan,50 genscan,125 genscan,163 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 rmsk,282 simpleRepeat,57 xenoRefGene,176 most augustusGene,93 augustusGene,110 est,484 intronEst,520 rmsk,215 mouse chainDm2,517 netDm2,494 mrna est,9 est,507 est,523 est,606 intronEst,10 intronEst,543 intronEst,559 intronEst,642 mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 much netDm2,375 netDm2,392 multiple chainDm2,163 est,260 est,690 intronEst,726 mrna,206 mrna,406 xenoRefGene,245 must intronEst,63 mutation chainDm2,150 myers blastDm1FB,173 name chainDm2,280 est,201 intronEst,276 mrna,147 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainDm2,208 xenoRefGene,131 native augustusGene,295 natl chainDm2,522 netDm2,499 natural netDm2,313 ncbi blastDm1FB,157 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 necessary netDm2,297 nematodes augustusGene,211 net netDm2,3 netDm2,12 netclass netDm2,367 netDm2,410 nets netDm2,465 netsyntenic netDm2,335 netDm2,408 new augustusGene,329 newer est,558 intronEst,594 rmsk,236 next blastDm1FB,72 chainDm2,259 chainDm2,288 chainDm2,374 nig augustusGene,270 no blastDm1FB,109 est,95 intronEst,170 microsat,73 non-a xenoRefGene,3 non-coding augustusGene,75 xenoRefGene,193 non-mrna est,627 intronEst,663 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 nonsyn netDm2,238 not est,352 est,487 est,514 est,528 intronEst,416 intronEst,523 intronEst,550 intronEst,564 mrna,298 netDm2,302 rmsk,272 note est,658 intronEst,694 rmsk,230 novo augustusGene,304 ns netDm2,382 nuclear rmsk,126 rmsk,134 nucleic est,762 est,787 intronEst,798 microsat,125 mrna,479 mrna,504 simpleRepeat,85 xenoRefGene,349 xenoRefGene,382 number augustusGene,153 intronEst,147 rmsk,203 o xenoRefGene,331 obtained augustusGene,126 occur simpleRepeat,36 oct augustusGene,334 blastDm1FB,186 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastDm1FB,22 blastDm1FB,38 blastDm1FB,122 blastDm1FB,134 blastDm1FB,142 blastDm1FB,155 chainDm2,148 chainDm2,169 chainDm2,217 chainDm2,271 chainDm2,281 chainDm2,365 chainDm2,371 chainDm2,378 chainDm2,446 chainDm2,468 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,318 est,428 est,505 est,521 est,539 est,556 est,618 est,626 est,630 est,710 gap,20 gap,46 gap,52 gap,88 gcPercent,20 genscan,43 genscan,110 genscan,134 genscan,212 gold,15 gold,79 gold,104 gold,132 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,541 intronEst,557 intronEst,575 intronEst,592 intronEst,654 intronEst,662 intronEst,666 intronEst,746 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 netDm2,29 netDm2,172 netDm2,192 netDm2,376 netDm2,417 netDm2,463 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 simpleRepeat,40 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainDm2,250 chainDm2,256 xenoRefGene,134 offers genscan,79 often chainDm2,179 chainDm2,191 oligo-dt est,498 intronEst,534 on augustusGene,29 augustusGene,37 augustusGene,151 blastDm1FB,164 chainDm2,238 chainDm2,264 est,232 est,281 gap,49 genscan,27 genscan,52 gold,54 intronEst,307 intronEst,345 mrna,178 mrna,227 netDm2,140 netDm2,154 netDm2,204 netDm2,209 netDm2,224 netDm2,263 rmsk,74 rmsk,243 xenoRefGene,345 once est,266 mrna,212 one augustusGene,169 chainDm2,156 chainDm2,272 est,173 est,284 est,317 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,230 mrna,263 netDm2,191 netDm2,290 netDm2,386 only chainDm2,268 est,157 est,297 est,370 est,403 est,701 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,737 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 xenoRefGene,210 xenoRefGene,256 opposite netDm2,236 option augustusGene,167 augustusGene,187 est,416 genscan,94 intronEst,480 mrna,353 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options est,445 genscan,85 mrna,384 or blastDm1FB,212 chainDm2,94 chainDm2,118 chainDm2,151 est,174 est,309 est,328 est,337 est,402 est,480 est,512 est,526 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,516 intronEst,548 intronEst,562 mrna,120 mrna,255 mrna,274 mrna,283 netDm2,175 netDm2,358 netDm2,387 xenoRefGene,132 order gap,43 gold,42 gold,101 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 organism chainDm2,247 chainDm2,277 organism-specific blastDm1FB,104 organisms netDm2,403 rmsk,261 xenoRefGene,21 organizes chainDm2,342 orientation gap,45 gold,43 gold,103 netDm2,237 orthologous netDm2,39 ostell est,757 est,781 intronEst,792 mrna,474 mrna,498 other augustusGene,208 netDm2,102 netDm2,195 rmsk,165 xenoRefGene,1 xenoRefGene,22 otherwise est,682 intronEst,718 ouml augustusGene,269 our augustusGene,43 genscan,58 out chainDm2,364 outputs rmsk,35 outside est,617 intronEst,653 over blastDm1FB,118 blastDm1FB,132 chainDm2,165 chainDm2,388 overlapping chainDm2,65 chainDm2,144 p genscan,205 pac chainDm2,491 pack chainDm2,200 page est,113 est,425 est,446 genscan,78 genscan,123 intronEst,188 mrna,59 mrna,364 mrna,385 rmsk,77 xenoRefGene,100 xenoRefGene,191 pages netDm2,268 paired-end gold,55 pairwise chainDm2,487 paralogs chainDm2,194 part blastDm1FB,154 netDm2,28 particular augustusGene,234 chainDm2,167 patterns augustusGene,56 penalty blastDm1FB,111 pennsylvania chainDm2,409 netDm2,428 peptides blastDm1FB,24 percent gcPercent,2 gcPercent,15 percentage gcPercent,3 gcPercent,19 perfect microsat,31 perhaps est,608 intronEst,644 period microsat,65 permitted rmsk,273 place netDm2,287 placed netDm2,329 places est,691 intronEst,727 mrna,407 xenoRefGene,246 plasmid est,469 intronEst,505 pmc chainDm2,536 chainDm2,567 est,773 est,799 est,817 microsat,136 mrna,490 mrna,516 mrna,534 netDm2,513 netDm2,544 simpleRepeat,96 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,818 mrna,535 xenoRefGene,319 pmc208784 chainDm2,537 netDm2,514 pmc308779 est,800 mrna,517 pmc3531190 est,774 mrna,491 pmc3965018 xenoRefGene,361 pmc430961 chainDm2,568 netDm2,545 pmc539979 xenoRefGene,395 pmid augustusGene,314 augustusGene,339 blastDm1FB,191 chainDm2,496 chainDm2,534 chainDm2,565 est,771 est,797 est,815 genscan,229 microsat,134 mrna,488 mrna,514 mrna,532 netDm2,511 netDm2,542 rmsk,324 simpleRepeat,94 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,551 intronEst,587 poly-a augustusGene,62 est,503 est,577 intronEst,539 intronEst,613 polymorphic microsat,41 simpleRepeat,46 population microsat,44 portion chainDm2,168 possible gold,29 netDm2,96 possibly simpleRepeat,18 pre-mrna genscan,185 predicted blastDm1FB,27 blastDm1FB,49 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastDm1FB,15 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 present rmsk,44 primed est,495 intronEst,531 primer est,482 intronEst,518 priming est,578 intronEst,614 proc chainDm2,521 netDm2,498 process gap,30 netDm2,311 processed chainDm2,182 produce blastDm1FB,204 produced est,729 intronEst,768 mrna,446 xenoRefGene,284 program augustusGene,21 augustusGene,257 blastDm1FB,67 blastDm1FB,92 chainDm2,387 chainDm2,436 chainDm2,440 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 netDm2,281 netDm2,334 netDm2,366 netDm2,455 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 programs netDm2,411 project xenoRefGene,301 projects est,572 est,591 est,621 intronEst,608 intronEst,627 intronEst,657 protein blastDm1FB,125 blastDm1FB,144 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 proteins blastDm1FB,3 blastDm1FB,6 blastDm1FB,50 xenoRefGene,381 providing augustusGene,254 genscan,175 rmsk,292 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudogenes chainDm2,183 chainDm2,197 psl est,57 intronEst,135 mrna,38 public est,740 intronEst,779 mrna,457 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 put chainDm2,321 putative blastDm1FB,95 quality est,75 mrna,56 query blastDm1FB,124 blastDm1FB,136 rmsk,47 rmsk,61 quickly mrna,341 xenoRefGene,152 quite simpleRepeat,45 quot chainDm2,54 chainDm2,56 chainDm2,255 chainDm2,257 est,241 est,243 est,292 est,294 est,308 est,310 est,344 est,346 est,361 est,363 gold,38 gold,40 gold,135 gold,137 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 r augustusGene,291 chainDm2,501 chainDm2,547 netDm2,478 netDm2,524 r4 chainDm2,9 chainDm2,80 netDm2,9 netDm2,60 random augustusGene,119 est,574 intronEst,610 random-primed est,620 intronEst,656 raney blastDm1FB,214 ranked netDm2,278 rather est,575 intronEst,611 rc chainDm2,549 netDm2,526 rmsk,170 read est,473 gold,56 intronEst,509 reads gold,22 rearrangement chainDm2,514 netDm2,45 netDm2,182 netDm2,491 reasonably est,541 est,564 intronEst,577 intronEst,600 record xenoRefGene,67 reduced intronEst,100 refer genscan,144 reference xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainDm2,479 est,746 genscan,152 genscan,179 intronEst,785 microsat,113 mrna,463 netDm2,474 rmsk,103 rmsk,303 simpleRepeat,73 xenoRefGene,302 reflects rmsk,183 refseq xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 region netDm2,85 regions augustusGene,76 chainDm2,101 genscan,48 microsat,14 netDm2,40 simpleRepeat,39 related augustusGene,242 relationship est,96 intronEst,171 netDm2,344 relative gap,42 gold,100 netDm2,360 relevant est,160 intronEst,235 mrna,106 remaining blastDm1FB,200 chainDm2,399 removed chainDm2,307 repbase rmsk,81 rmsk,93 rmsk,306 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeating rmsk,2 repeatmasker chainDm2,437 netDm2,456 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainDm2,428 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 netDm2,447 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive rmsk,315 represent chainDm2,99 chainDm2,128 est,41 intronEst,52 netDm2,132 netDm2,137 represented gap,33 rmsk,49 representing gap,72 required blastDm1FB,202 requiring intronEst,88 res chainDm2,559 est,764 est,789 est,809 intronEst,800 intronEst,816 microsat,127 mrna,481 mrna,506 mrna,526 netDm2,536 simpleRepeat,87 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research rmsk,90 result chainDm2,141 resulting chainDm2,310 chainDm2,327 chainDm2,336 retrieve est,583 intronEst,619 retroposons rmsk,144 reverse est,458 est,492 est,509 intronEst,494 intronEst,528 intronEst,545 review xenoRefGene,64 reviewed xenoRefGene,74 rna est,104 est,452 intronEst,179 intronEst,488 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainDm2,474 netDm2,469 rolling rmsk,171 ross chainDm2,425 netDm2,444 rrna rmsk,162 running chainDm2,384 s augustusGene,104 augustusGene,221 augustusGene,319 blastDm1FB,145 chainDm2,509 chainDm2,526 chainDm2,539 genscan,190 genscan,194 genscan,210 netDm2,486 netDm2,503 netDm2,516 rmsk,18 rmsk,252 saccharomyces augustusGene,223 salzberg genscan,189 same netDm2,211 netDm2,226 sample augustusGene,133 sampling augustusGene,129 santa chainDm2,449 netDm2,419 satellite rmsk,155 sayers est,759 mrna,476 scaffold gold,51 gold,71 gold,109 scaffolds gold,34 schwartz chainDm2,416 chainDm2,538 netDm2,435 netDm2,515 sci chainDm2,524 netDm2,501 science genscan,203 scientists est,744 intronEst,783 mrna,461 xenoRefGene,293 scoring chainDm2,28 chainDm2,38 chainDm2,376 chainDm2,392 chainDm2,486 scott chainDm2,415 netDm2,434 screens rmsk,22 scrna rmsk,164 search blastDm1FB,180 searls genscan,191 section genscan,153 rmsk,104 sections netDm2,301 see augustusGene,42 blastDm1FB,166 genscan,57 intronEst,118 microsat,101 rmsk,278 simpleRepeat,63 xenoRefGene,209 select genscan,90 xenoRefGene,162 selected est,296 est,312 est,365 intronEst,360 intronEst,376 intronEst,429 mrna,242 mrna,258 mrna,311 selecting microsat,60 semi-markov augustusGene,117 sep chainDm2,529 netDm2,506 rmsk,320 separated est,267 mrna,213 sequence augustusGene,32 augustusGene,70 blastDm1FB,46 blastDm1FB,88 chainDm2,73 chainDm2,135 chainDm2,489 est,21 est,92 est,401 est,410 est,584 est,722 est,734 est,741 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,620 intronEst,758 intronEst,773 intronEst,780 mrna,347 mrna,438 mrna,451 mrna,458 netDm2,49 rmsk,48 rmsk,62 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequences blastDm1FB,76 est,32 est,603 est,611 intronEst,43 intronEst,639 intronEst,647 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,32 xenoRefGene,348 sequencing gap,6 gcPercent,11 gold,7 netDm2,383 set blastDm1FB,160 sets augustusGene,158 several est,426 mrna,365 sf blastDm1FB,168 shaded est,70 mrna,51 shading intronEst,143 rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 shotgun gold,21 gold,140 should est,332 est,636 intronEst,396 intronEst,672 mrna,278 show intronEst,31 intronEst,64 xenoRefGene,125 shown est,150 gold,92 intronEst,225 microsat,48 mrna,96 shows augustusGene,15 augustusGene,108 chainDm2,18 est,15 gcPercent,17 genscan,13 gold,11 intronEst,16 mrna,16 netDm2,18 xenoRefGene,14 side est,599 gap,51 intronEst,635 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 signs intronEst,32 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainDm2,52 since chainDm2,299 sine rmsk,128 single blastDm1FB,113 chainDm2,93 chainDm2,102 chainDm2,348 chainDm2,353 est,633 est,686 intronEst,669 intronEst,722 mrna,402 xenoRefGene,241 single-lined chainDm2,176 single-read est,31 intronEst,42 site genscan,157 sites augustusGene,54 augustusGene,59 size blastDm1FB,107 sizes gold,46 skepticism est,641 intronEst,677 sm xenoRefGene,325 smit chainDm2,433 chainDm2,542 netDm2,452 netDm2,519 rmsk,17 rmsk,288 snrna rmsk,163 so netDm2,124 soft-masked rmsk,264 software rmsk,221 some est,158 est,555 est,571 est,674 intronEst,233 intronEst,591 intronEst,607 intronEst,710 mrna,104 sometimes simpleRepeat,50 sorted netDm2,270 space est,270 mrna,216 spaces gold,90 span netDm2,83 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainDm2,69 chainDm2,138 chainDm2,157 netDm2,389 species-specific augustusGene,156 specific est,197 intronEst,272 mrna,143 simpleRepeat,53 splice augustusGene,53 genscan,156 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,89 split chainDm2,305 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,563 intronEst,599 state chainDm2,410 netDm2,429 statistical augustusGene,47 stefanie augustusGene,267 storage chainDm2,467 netDm2,462 strand chainDm2,212 est,77 intronEst,152 structure augustusGene,113 structures augustusGene,164 genscan,215 studying netDm2,43 submitted est,736 intronEst,775 mrna,453 submodel augustusGene,331 subsections chainDm2,369 subset est,136 intronEst,211 microsat,54 mrna,82 substantial chainDm2,134 successful est,593 intronEst,629 such netDm2,350 supercontigs gold,39 suppl augustusGene,336 symp chainDm2,492 syn netDm2,207 syntenic netDm2,357 syntenically augustusGene,297 system chainDm2,29 systems chainDm2,39 t xenoRefGene,365 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 tags est,22 intronEst,23 tail est,504 intronEst,540 taken est,475 intronEst,511 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 tatusova xenoRefGene,364 tblastn blastDm1FB,11 blastDm1FB,20 blastDm1FB,91 blastDm1FB,152 techniques est,569 intronEst,605 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term est,171 intronEst,246 mrna,117 terminal rmsk,138 terms est,215 est,261 intronEst,290 mrna,161 mrna,207 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 than blastDm1FB,120 chainDm2,34 est,283 est,576 gcPercent,42 intronEst,347 intronEst,612 mrna,229 netDm2,196 rmsk,237 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 genscan,170 rmsk,285 that blastDm1FB,77 blastDm1FB,130 chainDm2,30 chainDm2,106 chainDm2,132 chainDm2,282 chainDm2,295 est,39 est,66 est,120 est,227 est,251 est,299 est,314 est,331 est,355 est,373 est,390 est,405 est,659 est,680 genscan,141 gold,66 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,695 intronEst,716 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 netDm2,82 netDm2,104 netDm2,320 netDm2,331 rmsk,42 rmsk,231 rmsk,239 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastDm1FB,23 blastDm1FB,26 blastDm1FB,33 blastDm1FB,43 blastDm1FB,52 blastDm1FB,60 blastDm1FB,65 blastDm1FB,73 blastDm1FB,85 blastDm1FB,90 blastDm1FB,94 blastDm1FB,112 blastDm1FB,123 blastDm1FB,135 blastDm1FB,143 blastDm1FB,156 blastDm1FB,199 chainDm2,70 chainDm2,76 chainDm2,84 chainDm2,97 chainDm2,114 chainDm2,122 chainDm2,170 chainDm2,199 chainDm2,205 chainDm2,210 chainDm2,218 chainDm2,230 chainDm2,245 chainDm2,251 chainDm2,254 chainDm2,269 chainDm2,275 chainDm2,279 chainDm2,300 chainDm2,309 chainDm2,317 chainDm2,324 chainDm2,326 chainDm2,335 chainDm2,344 chainDm2,367 chainDm2,372 chainDm2,389 chainDm2,398 chainDm2,438 chainDm2,444 chainDm2,462 chainDm2,469 chainDm2,516 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,277 est,287 est,319 est,326 est,340 est,349 est,357 est,366 est,375 est,392 est,399 est,408 est,419 est,440 est,463 est,477 est,491 est,502 est,508 est,518 est,522 est,533 est,537 est,544 est,553 est,557 est,567 est,587 est,613 est,619 est,654 est,660 est,692 est,695 est,711 est,720 est,738 est,804 gap,13 gap,18 gap,28 gap,41 gap,47 gap,53 gap,69 gap,73 gap,86 gcPercent,13 gcPercent,18 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,41 gold,64 gold,69 gold,77 gold,94 gold,99 gold,105 gold,119 gold,124 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,499 intronEst,513 intronEst,527 intronEst,538 intronEst,544 intronEst,554 intronEst,558 intronEst,569 intronEst,573 intronEst,580 intronEst,589 intronEst,593 intronEst,603 intronEst,623 intronEst,649 intronEst,655 intronEst,690 intronEst,696 intronEst,728 intronEst,731 intronEst,747 intronEst,756 intronEst,777 intronEst,811 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 netDm2,19 netDm2,30 netDm2,46 netDm2,56 netDm2,72 netDm2,78 netDm2,92 netDm2,110 netDm2,127 netDm2,130 netDm2,135 netDm2,148 netDm2,161 netDm2,163 netDm2,170 netDm2,173 netDm2,180 netDm2,186 netDm2,199 netDm2,210 netDm2,214 netDm2,217 netDm2,225 netDm2,229 netDm2,235 netDm2,246 netDm2,249 netDm2,260 netDm2,264 netDm2,272 netDm2,276 netDm2,280 netDm2,288 netDm2,333 netDm2,343 netDm2,362 netDm2,365 netDm2,377 netDm2,401 netDm2,406 netDm2,415 netDm2,457 netDm2,464 netDm2,493 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 simpleRepeat,60 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 them netDm2,295 rmsk,277 then chainDm2,320 netDm2,284 netDm2,369 there chainDm2,161 est,622 intronEst,658 therefore gold,113 these augustusGene,95 augustusGene,190 chainDm2,53 chainDm2,379 est,590 gap,15 intronEst,626 microsat,24 netDm2,97 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 they chainDm2,241 thibaud-nissen xenoRefGene,326 this augustusGene,13 augustusGene,106 augustusGene,224 blastDm1FB,17 blastDm1FB,205 chainDm2,16 chainDm2,139 est,13 est,50 est,115 est,142 est,378 est,415 est,595 est,631 est,644 est,726 gap,8 gap,38 gap,78 gcPercent,58 genscan,11 genscan,65 genscan,128 gold,9 gold,61 gold,129 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,631 intronEst,667 intronEst,680 intronEst,762 intronEst,765 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 netDm2,16 netDm2,52 netDm2,84 netDm2,310 rmsk,10 rmsk,51 rmsk,114 rmsk,301 simpleRepeat,12 simpleRepeat,31 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,371 est,404 intronEst,435 intronEst,468 microsat,62 mrna,317 rmsk,238 xenoRefGene,229 thousands chainDm2,216 threshold chainDm2,395 through gap,68 rmsk,268 xenoRefGene,90 time netDm2,293 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,325 mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastDm1FB,42 blastDm1FB,68 blastDm1FB,203 chainDm2,110 chainDm2,181 chainDm2,193 chainDm2,232 chainDm2,243 chainDm2,248 chainDm2,260 chainDm2,266 chainDm2,289 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,335 est,384 est,394 est,418 est,439 est,448 est,517 est,582 est,642 est,737 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,122 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,484 intronEst,553 intronEst,618 intronEst,678 intronEst,776 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 netDm2,143 netDm2,157 netDm2,241 netDm2,286 netDm2,298 netDm2,338 netDm2,361 netDm2,371 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 simpleRepeat,81 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together blastDm1FB,101 chainDm2,90 tolerate chainDm2,43 tool blastDm1FB,159 blastDm1FB,181 est,807 intronEst,814 mrna,524 xenoRefGene,308 tools rmsk,294 top netDm2,198 xenoRefGene,95 top-level netDm2,73 netDm2,93 track augustusGene,14 augustusGene,107 blastDm1FB,18 blastDm1FB,56 blastDm1FB,206 chainDm2,17 chainDm2,86 chainDm2,262 est,14 est,51 est,116 est,141 est,153 est,379 est,645 est,727 gap,9 gap,39 gcPercent,16 gcPercent,59 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,62 gold,130 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,681 intronEst,763 intronEst,766 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 netDm2,17 rmsk,11 rmsk,52 rmsk,115 rmsk,302 simpleRepeat,13 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 est,59 est,424 genscan,56 genscan,74 intronEst,137 mrna,40 mrna,363 netDm2,266 xenoRefGene,56 traditional chainDm2,35 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,459 intronEst,55 intronEst,495 transcript est,554 intronEst,590 transcriptase est,510 intronEst,546 transcription est,101 est,493 est,540 est,562 intronEst,176 intronEst,529 intronEst,576 intronEst,598 transcriptional genscan,28 transcripts augustusGene,124 xenoRefGene,379 translation augustusGene,57 translational genscan,29 transposons chainDm2,294 chainDm2,318 netDm2,396 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming netDm2,294 trna rmsk,161 true augustusGene,132 turn chainDm2,249 xenoRefGene,133 two netDm2,402 type est,169 est,199 gap,81 gold,134 intronEst,244 intronEst,274 mrna,115 mrna,145 types augustusGene,89 est,248 est,427 intronEst,323 mrna,194 mrna,366 netDm2,194 typically est,33 est,462 gcPercent,52 intronEst,44 intronEst,498 u chainDm2,525 netDm2,502 ucsc est,731 gcPercent,63 intronEst,770 mrna,448 rmsk,211 xenoRefGene,286 undergone xenoRefGene,69 underlies genscan,142 underlying xenoRefGene,37 underneath netDm2,330 ungapped netDm2,133 university chainDm2,411 chainDm2,445 netDm2,416 netDm2,430 unknown rmsk,173 unprocessed chainDm2,196 est,605 intronEst,641 unsequenced chainDm2,153 unspliced est,8 est,634 intronEst,117 intronEst,670 up blastDm1FB,79 gold,68 rmsk,117 update est,786 intronEst,797 mrna,503 rmsk,82 rmsk,94 rmsk,307 xenoRefGene,344 updated xenoRefGene,41 use est,166 gold,78 intronEst,241 mrna,112 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 est,123 est,275 est,334 est,573 genscan,159 intronEst,198 intronEst,339 intronEst,398 intronEst,609 mrna,69 mrna,221 mrna,280 netDm2,50 netDm2,285 netDm2,337 netDm2,370 rmsk,213 rmsk,258 rmsk,298 useful microsat,20 netDm2,36 netDm2,167 user est,393 intronEst,457 mrna,339 users xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastDm1FB,64 blastDm1FB,89 blastDm1FB,102 chainDm2,25 est,656 intronEst,692 microsat,90 mrna,396 netDm2,259 rmsk,15 rmsk,249 xenoRefGene,227 usually est,40 intronEst,51 utilities blastDm1FB,201 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 validate xenoRefGene,153 validation genscan,107 value est,285 intronEst,349 mrna,231 variation microsat,7 rmsk,6 simpleRepeat,8 vb chainDm2,483 vector est,470 intronEst,506 version augustusGene,23 augustusGene,263 rmsk,58 versions augustusGene,279 rmsk,217 rmsk,233 vertebrates augustusGene,209 very est,677 intronEst,713 view est,210 intronEst,285 mrna,156 netDm2,144 viewed est,638 intronEst,674 w blastDm1FB,170 blastDm1FB,172 chainDm2,485 chainDm2,505 chainDm2,553 gold,136 netDm2,482 netDm2,530 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastDm1FB,194 chainDm2,406 chainDm2,441 est,699 est,728 gcPercent,60 intronEst,735 intronEst,767 microsat,108 mrna,415 mrna,445 netDm2,283 netDm2,328 netDm2,336 netDm2,356 netDm2,368 netDm2,393 netDm2,425 rmsk,12 simpleRepeat,68 xenoRefGene,254 xenoRefGene,283 webb chainDm2,420 chainDm2,457 netDm2,439 weekly xenoRefGene,42 well augustusGene,78 est,542 est,565 genscan,36 intronEst,578 intronEst,601 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastDm1FB,57 blastDm1FB,82 blastDm1FB,99 blastDm1FB,126 blastDm1FB,148 blastDm1FB,207 chainDm2,306 chainDm2,313 chainDm2,319 chainDm2,329 chainDm2,381 chainDm2,396 chainDm2,429 chainDm2,471 est,592 est,651 est,723 gold,23 gold,31 intronEst,628 intronEst,687 mrna,391 mrna,439 netDm2,254 netDm2,412 netDm2,448 netDm2,466 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wheeler est,783 intronEst,794 mrna,500 when augustusGene,188 augustusGene,238 est,146 est,156 est,684 gold,28 intronEst,35 intronEst,221 intronEst,231 intronEst,720 mrna,92 mrna,102 mrna,400 netDm2,95 xenoRefGene,239 where chainDm2,160 gold,85 whether netDm2,352 which augustusGene,159 augustusGene,227 chainDm2,239 est,106 est,233 est,499 est,524 est,671 intronEst,181 intronEst,308 intronEst,535 intronEst,560 intronEst,707 mrna,179 netDm2,317 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 while chainDm2,184 white gap,64 whole gold,138 netDm2,152 whole-genome gold,20 wildcards est,271 intronEst,335 mrna,217 will est,304 est,322 est,351 est,368 gap,24 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,250 mrna,268 mrna,297 mrna,314 window gcPercent,32 windows gcPercent,8 gcPercent,33 gcPercent,43 wish est,235 intronEst,310 mrna,181 xenoRefGene,207 with augustusGene,127 augustusGene,322 blastDm1FB,59 blastDm1FB,84 chainDm2,175 chainDm2,186 chainDm2,315 chainDm2,422 chainDm2,454 chainDm2,556 est,105 est,501 est,639 est,676 est,719 gap,17 gcPercent,34 gcPercent,44 gcPercent,54 intronEst,180 intronEst,537 intronEst,675 intronEst,712 intronEst,755 microsat,69 microsat,76 mrna,435 netDm2,271 netDm2,395 netDm2,441 netDm2,533 rmsk,195 simpleRepeat,52 xenoRefGene,230 xenoRefGene,274 within est,139 est,552 est,708 gold,49 gold,107 gold,128 intronEst,214 intronEst,588 intronEst,744 mrna,85 mrna,424 simpleRepeat,37 xenoRefGene,84 xenoRefGene,263 wj chainDm2,499 chainDm2,541 est,802 intronEst,809 mrna,519 netDm2,476 netDm2,518 xenoRefGene,304 worldwide est,745 intronEst,784 mrna,462 xenoRefGene,294 written blastDm1FB,195 blastDm1FB,208 genscan,19 microsat,109 simpleRepeat,69 yap chainDm2,482 you est,234 intronEst,309 mrna,180 xenoRefGene,206 z chainDm2,545 netDm2,522 zebrafish augustusGene,202 augustusGene,278 zhang chainDm2,418 chainDm2,544 netDm2,437 netDm2,521 zheng chainDm2,417 netDm2,436 zoomed-in genscan,103