0 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refGene,297 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,425 transMapEnsemblV5,226 transMapEnsemblV5,361 transMapEstV5,195 transMapEstV5,330 transMapRefSeqV5,195 transMapRefSeqV5,330 transMapRnaV5,195 transMapRnaV5,330 transMapV5,301 transMapV5,436 xenoRefGene,264 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 transMapV5,110 1 HLTOGAannotvGalGal6v1,239 augustusGene,310 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 genscan,227 mrna,509 refGene,421 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,387 1.0 transMapEnsemblV5,369 transMapEstV5,338 transMapRefSeqV5,338 transMapRnaV5,338 transMapV5,444 10 uniprot,1928 100 augustusGene,134 microsat,70 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,674 transMapEstV5,643 transMapRefSeqV5,643 transMapRnaV5,643 transMapV5,749 uniprot,1824 10607616 rmsk,417 10973072 rmsk,384 11932250 mrna,533 refGene,351 xenoRefGene,317 12 mrna,529 refGene,347 transMapEnsemblV5,751 transMapEnsemblV5,817 transMapEstV5,720 transMapEstV5,786 transMapRefSeqV5,720 transMapRefSeqV5,786 transMapRnaV5,720 transMapRnaV5,786 transMapV5,826 transMapV5,892 xenoRefGene,313 127-163 genscan,206 134-41 windowmaskerSdust,112 14534192 augustusGene,340 14681350 mrna,515 15 microsat,30 microsat,79 microsat,130 refGene,269 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,236 15108278 uniprot,2051 15608248 refGene,427 xenoRefGene,393 16 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,750 transMapEstV5,719 transMapRefSeqV5,719 transMapRnaV5,719 transMapV5,825 1763-73 transMapEnsemblV5,752 transMapEstV5,721 transMapRefSeqV5,721 transMapRnaV5,721 transMapV5,827 178 gap,132 17989246 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 18085818 transMapEnsemblV5,820 transMapEstV5,789 transMapRefSeqV5,789 transMapRnaV5,789 transMapV5,895 18218656 augustusGene,315 transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 rmsk,433 1996-2010 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 2.0 HLTOGAannotvGalGal6v1,103 20 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 transMapEnsemblV5,377 transMapEstV5,346 transMapRefSeqV5,346 transMapRnaV5,346 transMapV5,452 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 rmsk,99 rmsk,378 2002 mrna,527 refGene,345 xenoRefGene,311 2003 augustusGene,333 2004 mrna,507 uniprot,2045 2005 refGene,419 xenoRefGene,385 2006 windowmaskerSdust,107 2007 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 2008 augustusGene,308 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 2012 uniprot,2000 2013 mrna,482 2014 refGene,386 xenoRefGene,352 2015 gap,16 gold,18 2022_03 uniprot,1911 2023 HLTOGAannotvGalGal6v1,365 uniprot,1191 203 gold,152 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 23 uniprot,2047 23193287 mrna,489 24 augustusGene,311 gap,137 transMapEnsemblV5,782 transMapEstV5,751 transMapRefSeqV5,751 transMapRnaV5,751 transMapV5,857 24259432 refGene,393 xenoRefGene,359 25 gap,136 genscan,225 transMapV5,113 xenoRefGene,271 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 28 HLTOGAannotvGalGal6v1,367 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 transMapEnsemblV5,816 transMapEstV5,785 transMapRefSeqV5,785 transMapRnaV5,785 transMapV5,891 uniprot,1123 uniprot,1194 3.1 augustusGene,24 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 32 mrna,510 33 refGene,422 xenoRefGene,388 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 37104600 HLTOGAannotvGalGal6v1,372 380 HLTOGAannotvGalGal6v1,368 4 mrna,530 refGene,348 xenoRefGene,314 40 uniprot,2002 400 transMapV5,109 41 mrna,484 418-420 rmsk,382 42 refGene,388 xenoRefGene,354 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 transMapEnsemblV5,9 transMapEnsemblV5,783 transMapEstV5,7 transMapEstV5,752 transMapRefSeqV5,8 transMapRefSeqV5,752 transMapRnaV5,8 transMapRnaV5,752 transMapV5,6 transMapV5,858 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 HLTOGAannotvGalGal6v1,167 HLTOGAannotvGalGal6v1,214 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 573-80 microsat,133 simpleRepeat,93 575 gold,153 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 rmsk,414 rmsk,435 rmsk,436 637-44 augustusGene,313 transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 656-64 mrna,531 refGene,349 xenoRefGene,315 657-63 rmsk,415 6643 HLTOGAannotvGalGal6v1,369 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 743-8 rmsk,437 761 gap,138 78-94 genscan,228 80 HLTOGAannotvGalGal6v1,145 HLTOGAannotvGalGal6v1,179 HLTOGAannotvGalGal6v1,226 HLTOGAannotvGalGal6v1,245 857 gap,133 8994846 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 rmsk,381 rmsk,413 9149143 genscan,230 93 uniprot,1483 96 mrna,432 refGene,304 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a HLTOGAannotvGalGal6v1,25 HLTOGAannotvGalGal6v1,46 HLTOGAannotvGalGal6v1,50 HLTOGAannotvGalGal6v1,62 HLTOGAannotvGalGal6v1,74 HLTOGAannotvGalGal6v1,116 HLTOGAannotvGalGal6v1,138 HLTOGAannotvGalGal6v1,268 HLTOGAannotvGalGal6v1,291 HLTOGAannotvGalGal6v1,296 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 gap,100 gap,104 gc5BaseBw,44 genscan,102 genscan,132 gold,118 gold,124 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,401 mrna,420 refGene,273 refGene,292 refGene,363 refGene,406 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,116 transMapEnsemblV5,207 transMapEnsemblV5,320 transMapEnsemblV5,356 transMapEnsemblV5,400 transMapEnsemblV5,426 transMapEnsemblV5,479 transMapEnsemblV5,549 transMapEnsemblV5,628 transMapEnsemblV5,656 transMapEnsemblV5,715 transMapEstV5,52 transMapEstV5,85 transMapEstV5,176 transMapEstV5,289 transMapEstV5,325 transMapEstV5,369 transMapEstV5,395 transMapEstV5,448 transMapEstV5,518 transMapEstV5,597 transMapEstV5,625 transMapEstV5,684 transMapRefSeqV5,52 transMapRefSeqV5,85 transMapRefSeqV5,176 transMapRefSeqV5,289 transMapRefSeqV5,325 transMapRefSeqV5,369 transMapRefSeqV5,395 transMapRefSeqV5,448 transMapRefSeqV5,518 transMapRefSeqV5,597 transMapRefSeqV5,625 transMapRefSeqV5,684 transMapRnaV5,52 transMapRnaV5,85 transMapRnaV5,176 transMapRnaV5,289 transMapRnaV5,325 transMapRnaV5,369 transMapRnaV5,395 transMapRnaV5,448 transMapRnaV5,518 transMapRnaV5,597 transMapRnaV5,625 transMapRnaV5,684 transMapV5,53 transMapV5,191 transMapV5,282 transMapV5,395 transMapV5,431 transMapV5,475 transMapV5,501 transMapV5,554 transMapV5,624 transMapV5,703 transMapV5,731 transMapV5,790 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 about HLTOGAannotvGalGal6v1,301 gap,36 genscan,127 gold,38 microsat,98 mrna,351 refGene,211 simpleRepeat,59 transMapEnsemblV5,133 transMapEstV5,102 transMapRefSeqV5,102 transMapRnaV5,102 transMapV5,208 xenoRefGene,178 above uniprot,1525 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 transMapEnsemblV5,519 transMapEnsemblV5,578 transMapEstV5,488 transMapEstV5,547 transMapRefSeqV5,488 transMapRefSeqV5,547 transMapRnaV5,488 transMapRnaV5,547 transMapV5,594 transMapV5,653 uniprot,896 uniprot,1706 uniprot,1838 accessed transMapEnsemblV5,528 transMapEstV5,497 transMapRefSeqV5,497 transMapRnaV5,497 transMapV5,603 accessing transMapEnsemblV5,571 transMapEstV5,540 transMapRefSeqV5,540 transMapRnaV5,540 transMapV5,646 accession refGene,151 refGene,163 xenoRefGene,118 xenoRefGene,130 accession.version-srcuniq.destuniq transMapEnsemblV5,422 transMapEstV5,391 transMapRefSeqV5,391 transMapRnaV5,391 transMapV5,497 accessions transMapEnsemblV5,394 transMapEstV5,363 transMapRefSeqV5,363 transMapRnaV5,363 transMapV5,469 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 accurately HLTOGAannotvGalGal6v1,91 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids microsat,126 mrna,480 mrna,505 refGene,384 refGene,417 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added transMapEnsemblV5,428 transMapEnsemblV5,438 transMapEstV5,397 transMapEstV5,407 transMapRefSeqV5,397 transMapRefSeqV5,407 transMapRnaV5,397 transMapRnaV5,407 transMapV5,503 transMapV5,513 uniprot,1187 additional HLTOGAannotvGalGal6v1,299 rmsk,295 additions refGene,54 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 ae HLTOGAannotvGalGal6v1,347 af rmsk,395 rmsk,419 afa rmsk,348 after cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 uniprot,294 uniprot,1329 again transMapEnsemblV5,410 transMapEstV5,379 transMapRefSeqV5,379 transMapRnaV5,379 transMapV5,485 uniprot,629 uniprot,1500 against mrna,344 mrna,393 refGene,255 transMapEnsemblV5,126 transMapEstV5,95 transMapRefSeqV5,95 transMapRnaV5,95 transMapV5,201 xenoRefGene,222 agarwala windowmaskerSdust,98 agp gap,50 gap,59 gap,66 gold,49 gold,58 gold,65 ahmed HLTOGAannotvGalGal6v1,348 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al HLTOGAannotvGalGal6v1,355 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 refGene,375 transMapEnsemblV5,736 transMapEstV5,705 transMapRefSeqV5,705 transMapRnaV5,705 transMapV5,811 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align uniprot,1216 aligned mrna,392 mrna,404 refGene,254 refGene,276 transMapV5,117 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,221 xenoRefGene,243 aligning uniprot,952 alignment HLTOGAannotvGalGal6v1,65 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 refGene,265 refGene,281 refGene,341 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,104 transMapEnsemblV5,141 transMapEnsemblV5,197 transMapEnsemblV5,211 transMapEnsemblV5,390 transMapEnsemblV5,433 transMapEstV5,25 transMapEstV5,48 transMapEstV5,73 transMapEstV5,110 transMapEstV5,166 transMapEstV5,180 transMapEstV5,359 transMapEstV5,402 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,73 transMapRefSeqV5,110 transMapRefSeqV5,166 transMapRefSeqV5,180 transMapRefSeqV5,359 transMapRefSeqV5,402 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,73 transMapRnaV5,110 transMapRnaV5,166 transMapRnaV5,180 transMapRnaV5,359 transMapRnaV5,402 transMapV5,24 transMapV5,49 transMapV5,179 transMapV5,216 transMapV5,272 transMapV5,286 transMapV5,465 transMapV5,508 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments HLTOGAannotvGalGal6v1,23 HLTOGAannotvGalGal6v1,80 HLTOGAannotvGalGal6v1,313 augustusGene,300 mrna,17 mrna,418 refGene,290 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,155 transMapEnsemblV5,168 transMapEnsemblV5,327 transMapEnsemblV5,340 transMapEnsemblV5,350 transMapEnsemblV5,373 transMapEnsemblV5,444 transMapEnsemblV5,456 transMapEnsemblV5,771 transMapEstV5,19 transMapEstV5,41 transMapEstV5,124 transMapEstV5,137 transMapEstV5,296 transMapEstV5,309 transMapEstV5,319 transMapEstV5,342 transMapEstV5,413 transMapEstV5,425 transMapEstV5,740 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,124 transMapRefSeqV5,137 transMapRefSeqV5,296 transMapRefSeqV5,309 transMapRefSeqV5,319 transMapRefSeqV5,342 transMapRefSeqV5,413 transMapRefSeqV5,425 transMapRefSeqV5,740 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,124 transMapRnaV5,137 transMapRnaV5,296 transMapRnaV5,309 transMapRnaV5,319 transMapRnaV5,342 transMapRnaV5,413 transMapRnaV5,425 transMapRnaV5,740 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,68 transMapV5,86 transMapV5,128 transMapV5,141 transMapV5,230 transMapV5,243 transMapV5,402 transMapV5,415 transMapV5,425 transMapV5,448 transMapV5,519 transMapV5,531 transMapV5,846 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,257 aligns transMapV5,163 all augustusGene,207 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 mrna,138 mrna,192 mrna,247 rmsk,65 transMapEnsemblV5,191 transMapEstV5,160 transMapRefSeqV5,160 transMapRnaV5,160 transMapV5,266 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allows augustusGene,168 mrna,337 refGene,182 transMapEnsemblV5,119 transMapEnsemblV5,289 transMapEstV5,88 transMapEstV5,258 transMapRefSeqV5,88 transMapRefSeqV5,258 transMapRnaV5,88 transMapRnaV5,258 transMapV5,194 transMapV5,364 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,182 transMapEstV5,151 transMapRefSeqV5,151 transMapRnaV5,151 transMapV5,257 also HLTOGAannotvGalGal6v1,190 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 gap,32 gold,34 mrna,219 mrna,327 mrna,371 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,648 transMapEstV5,78 transMapEstV5,113 transMapEstV5,617 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,617 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,617 transMapV5,184 transMapV5,219 transMapV5,723 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter mrna,75 alternating gold,90 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,121 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 refGene,176 refGene,264 refGene,377 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis transMapEnsemblV5,540 transMapEstV5,509 transMapRefSeqV5,509 transMapRnaV5,509 transMapV5,615 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and HLTOGAannotvGalGal6v1,12 HLTOGAannotvGalGal6v1,34 HLTOGAannotvGalGal6v1,61 HLTOGAannotvGalGal6v1,69 HLTOGAannotvGalGal6v1,83 HLTOGAannotvGalGal6v1,86 HLTOGAannotvGalGal6v1,110 HLTOGAannotvGalGal6v1,130 HLTOGAannotvGalGal6v1,153 HLTOGAannotvGalGal6v1,176 HLTOGAannotvGalGal6v1,223 HLTOGAannotvGalGal6v1,310 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 gap,5 gap,81 gap,103 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,92 gold,106 gold,112 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 refGene,6 refGene,19 refGene,45 refGene,55 refGene,78 refGene,112 refGene,162 refGene,187 refGene,220 refGene,233 refGene,301 refGene,328 refGene,414 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,94 transMapEnsemblV5,174 transMapEnsemblV5,199 transMapEnsemblV5,366 transMapEnsemblV5,368 transMapEnsemblV5,392 transMapEnsemblV5,409 transMapEnsemblV5,435 transMapEnsemblV5,466 transMapEnsemblV5,482 transMapEnsemblV5,497 transMapEnsemblV5,554 transMapEnsemblV5,639 transMapEnsemblV5,688 transMapEnsemblV5,702 transMapEnsemblV5,709 transMapEnsemblV5,767 transMapEstV5,9 transMapEstV5,63 transMapEstV5,143 transMapEstV5,168 transMapEstV5,335 transMapEstV5,337 transMapEstV5,361 transMapEstV5,378 transMapEstV5,404 transMapEstV5,435 transMapEstV5,451 transMapEstV5,466 transMapEstV5,523 transMapEstV5,608 transMapEstV5,657 transMapEstV5,671 transMapEstV5,678 transMapEstV5,736 transMapRefSeqV5,10 transMapRefSeqV5,63 transMapRefSeqV5,143 transMapRefSeqV5,168 transMapRefSeqV5,335 transMapRefSeqV5,337 transMapRefSeqV5,361 transMapRefSeqV5,378 transMapRefSeqV5,404 transMapRefSeqV5,435 transMapRefSeqV5,451 transMapRefSeqV5,466 transMapRefSeqV5,523 transMapRefSeqV5,608 transMapRefSeqV5,657 transMapRefSeqV5,671 transMapRefSeqV5,678 transMapRefSeqV5,736 transMapRnaV5,10 transMapRnaV5,63 transMapRnaV5,143 transMapRnaV5,168 transMapRnaV5,335 transMapRnaV5,337 transMapRnaV5,361 transMapRnaV5,378 transMapRnaV5,404 transMapRnaV5,435 transMapRnaV5,451 transMapRnaV5,466 transMapRnaV5,523 transMapRnaV5,608 transMapRnaV5,657 transMapRnaV5,671 transMapRnaV5,678 transMapRnaV5,736 transMapV5,8 transMapV5,16 transMapV5,74 transMapV5,88 transMapV5,139 transMapV5,162 transMapV5,169 transMapV5,249 transMapV5,274 transMapV5,441 transMapV5,443 transMapV5,467 transMapV5,484 transMapV5,510 transMapV5,541 transMapV5,557 transMapV5,572 transMapV5,629 transMapV5,714 transMapV5,763 transMapV5,777 transMapV5,784 transMapV5,842 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotate HLTOGAannotvGalGal6v1,100 annotated HLTOGAannotvGalGal6v1,133 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation HLTOGAannotvGalGal6v1,31 HLTOGAannotvGalGal6v1,48 HLTOGAannotvGalGal6v1,358 rmsk,38 transMapEnsemblV5,609 transMapEstV5,578 transMapRefSeqV5,578 transMapRnaV5,578 transMapV5,684 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations HLTOGAannotvGalGal6v1,5 genscan,120 refGene,221 transMapEnsemblV5,60 transMapEnsemblV5,542 transMapEnsemblV5,703 transMapEnsemblV5,711 transMapEstV5,511 transMapEstV5,672 transMapEstV5,680 transMapRefSeqV5,511 transMapRefSeqV5,672 transMapRefSeqV5,680 transMapRnaV5,511 transMapRnaV5,672 transMapRnaV5,680 transMapV5,76 transMapV5,617 transMapV5,778 transMapV5,786 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 another transMapV5,81 any mrna,262 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 transMapEnsemblV5,566 transMapEstV5,535 transMapRefSeqV5,535 transMapRnaV5,535 transMapV5,641 appending transMapEnsemblV5,399 transMapEstV5,368 transMapRefSeqV5,368 transMapRnaV5,368 transMapV5,474 apply mrna,134 approach uniprot,1531 appropriate refGene,145 xenoRefGene,112 apr HLTOGAannotvGalGal6v1,366 genscan,224 mrna,528 refGene,346 xenoRefGene,312 apsects gc5BaseBw,51 aptman1 transMapEnsemblV5,205 transMapEnsemblV5,665 transMapEstV5,174 transMapEstV5,634 transMapRefSeqV5,174 transMapRefSeqV5,634 transMapRnaV5,174 transMapRnaV5,634 transMapV5,280 transMapV5,740 uniprot,1816 aptman1.ensembl.transmapv4.bigpsl transMapEnsemblV5,593 transMapEstV5,562 transMapRefSeqV5,562 transMapRnaV5,562 aptman1.ensembl.transmapv5.bigpsl transMapV5,668 aptman1.est.transmapv4.bigpsl transMapEnsemblV5,602 transMapEstV5,571 transMapRefSeqV5,571 transMapRnaV5,571 aptman1.est.transmapv5.bigpsl transMapV5,677 aptman1.fa windowmaskerSdust,62 windowmaskerSdust,71 aptman1.refseq.transmapv4.bigpsl transMapEnsemblV5,596 transMapEnsemblV5,668 transMapEstV5,565 transMapEstV5,637 transMapRefSeqV5,565 transMapRefSeqV5,637 transMapRnaV5,565 transMapRnaV5,637 aptman1.refseq.transmapv5.bigpsl transMapV5,671 transMapV5,743 aptman1.rna.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 aptman1.rna.transmapv5.bigpsl transMapV5,674 archive uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are HLTOGAannotvGalGal6v1,204 HLTOGAannotvGalGal6v1,277 augustusGene,27 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 gap,24 gap,69 genscan,25 genscan,160 gold,26 gold,84 gold,101 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 refGene,36 refGene,138 refGene,236 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,454 transMapEnsemblV5,461 transMapEnsemblV5,470 transMapEnsemblV5,504 transMapEnsemblV5,514 transMapEnsemblV5,543 transMapEnsemblV5,582 transMapEstV5,42 transMapEstV5,423 transMapEstV5,430 transMapEstV5,439 transMapEstV5,473 transMapEstV5,483 transMapEstV5,512 transMapEstV5,551 transMapRefSeqV5,42 transMapRefSeqV5,423 transMapRefSeqV5,430 transMapRefSeqV5,439 transMapRefSeqV5,473 transMapRefSeqV5,483 transMapRefSeqV5,512 transMapRefSeqV5,551 transMapRnaV5,42 transMapRnaV5,423 transMapRnaV5,430 transMapRnaV5,439 transMapRnaV5,473 transMapRnaV5,483 transMapRnaV5,512 transMapRnaV5,551 transMapV5,41 transMapV5,69 transMapV5,529 transMapV5,536 transMapV5,545 transMapV5,579 transMapV5,589 transMapV5,618 transMapV5,657 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 as HLTOGAannotvGalGal6v1,9 HLTOGAannotvGalGal6v1,37 HLTOGAannotvGalGal6v1,42 HLTOGAannotvGalGal6v1,141 HLTOGAannotvGalGal6v1,199 HLTOGAannotvGalGal6v1,259 augustusGene,77 augustusGene,79 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 gap,71 genscan,35 genscan,37 microsat,21 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,188 transMapEnsemblV5,215 transMapEnsemblV5,227 transMapEnsemblV5,516 transMapEnsemblV5,627 transMapEstV5,157 transMapEstV5,184 transMapEstV5,196 transMapEstV5,485 transMapEstV5,596 transMapRefSeqV5,157 transMapRefSeqV5,184 transMapRefSeqV5,196 transMapRefSeqV5,485 transMapRefSeqV5,596 transMapRnaV5,157 transMapRnaV5,184 transMapRnaV5,196 transMapRnaV5,485 transMapRnaV5,596 transMapV5,263 transMapV5,290 transMapV5,302 transMapV5,591 transMapV5,702 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refGene,58 assemblies augustusGene,196 augustusGene,237 rmsk,107 transMapEnsemblV5,193 transMapEstV5,162 transMapRefSeqV5,162 transMapRnaV5,162 transMapV5,268 assembly HLTOGAannotvGalGal6v1,209 augustusGene,197 gap,20 gap,22 gap,29 gap,38 gap,46 gap,117 gold,1 gold,2 gold,22 gold,24 gold,31 gold,40 gold,45 transMapV5,106 transMapV5,124 transMapV5,135 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assigned transMapEnsemblV5,462 transMapEstV5,431 transMapRefSeqV5,431 transMapRnaV5,431 transMapV5,537 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 rmsk,224 simpleRepeat,51 transMapEnsemblV5,583 transMapEstV5,552 transMapRefSeqV5,552 transMapRnaV5,552 transMapV5,658 uniprot,787 astashyn refGene,362 xenoRefGene,328 at HLTOGAannotvGalGal6v1,362 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 refGene,126 refGene,302 refGene,318 rmsk,243 rmsk,267 transMapEnsemblV5,295 transMapEnsemblV5,684 transMapEstV5,264 transMapEstV5,653 transMapRefSeqV5,264 transMapRefSeqV5,653 transMapRnaV5,264 transMapRnaV5,653 transMapV5,118 transMapV5,370 transMapV5,759 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,539 transMapEstV5,508 transMapRefSeqV5,508 transMapRnaV5,508 transMapV5,614 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available HLTOGAannotvGalGal6v1,329 augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 rmsk,73 transMapEnsemblV5,189 transMapEnsemblV5,247 transMapEstV5,158 transMapEstV5,216 transMapRefSeqV5,158 transMapRefSeqV5,216 transMapRnaV5,158 transMapRnaV5,216 transMapV5,264 transMapV5,322 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 aw HLTOGAannotvGalGal6v1,349 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 b transMapEnsemblV5,720 transMapEnsemblV5,730 transMapEstV5,689 transMapEstV5,699 transMapRefSeqV5,689 transMapRefSeqV5,699 transMapRnaV5,689 transMapRnaV5,699 transMapV5,795 transMapV5,805 baertsch augustusGene,290 transMapEnsemblV5,761 transMapEstV5,730 transMapRefSeqV5,730 transMapRnaV5,730 transMapV5,836 bairoch uniprot,2022 band cytoBandIdeo,2 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,359 mrna,413 mrna,421 mrna,433 refGene,285 refGene,293 refGene,305 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 base-level transMapEnsemblV5,321 transMapEstV5,290 transMapRefSeqV5,290 transMapRnaV5,290 transMapV5,396 based augustusGene,28 genscan,26 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,139 gc5BaseBw,25 transMapV5,166 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 bc149621.1-1 transMapEnsemblV5,465 transMapEnsemblV5,476 transMapEstV5,434 transMapEstV5,445 transMapRefSeqV5,434 transMapRefSeqV5,445 transMapRnaV5,434 transMapRnaV5,445 transMapV5,540 transMapV5,551 bc149621.1-1.1 transMapEnsemblV5,487 transMapEstV5,456 transMapRefSeqV5,456 transMapRnaV5,456 transMapV5,562 bc149621.1-2 transMapEnsemblV5,467 transMapEnsemblV5,489 transMapEstV5,436 transMapEstV5,458 transMapRefSeqV5,436 transMapRefSeqV5,458 transMapRnaV5,436 transMapRnaV5,458 transMapV5,542 transMapV5,564 bc149621.1-2.1 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 bc149621.1-2.2 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 be augustusGene,99 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 gc5BaseBw,41 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 refGene,121 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,110 transMapEnsemblV5,145 transMapEnsemblV5,527 transMapEnsemblV5,556 transMapEnsemblV5,611 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,649 transMapEstV5,79 transMapEstV5,114 transMapEstV5,496 transMapEstV5,525 transMapEstV5,580 transMapEstV5,588 transMapEstV5,611 transMapEstV5,618 transMapRefSeqV5,79 transMapRefSeqV5,114 transMapRefSeqV5,496 transMapRefSeqV5,525 transMapRefSeqV5,580 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,618 transMapRnaV5,79 transMapRnaV5,114 transMapRnaV5,496 transMapRnaV5,525 transMapRnaV5,580 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,618 transMapV5,185 transMapV5,220 transMapV5,602 transMapV5,631 transMapV5,686 transMapV5,694 transMapV5,717 transMapV5,724 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,88 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 bed3 windowmaskerSdust,76 been rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before uniprot,934 below genscan,154 genscan,168 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best mrna,428 refGene,300 transMapEnsemblV5,242 transMapEstV5,211 transMapRefSeqV5,211 transMapRnaV5,211 transMapV5,67 transMapV5,317 uniprot,1074 uniprot,1415 xenoRefGene,267 beta uniprot,364 better mrna,55 between HLTOGAannotvGalGal6v1,66 gap,127 gold,98 gold,103 mrna,18 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed transMapEnsemblV5,616 transMapEnsemblV5,661 transMapEstV5,585 transMapEstV5,630 transMapRefSeqV5,585 transMapRefSeqV5,630 transMapRnaV5,585 transMapRnaV5,630 transMapV5,691 transMapV5,736 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,546 transMapEstV5,515 transMapRefSeqV5,515 transMapRnaV5,515 transMapV5,621 binaries transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1781 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 biological uniprot,320 biology genscan,200 birds HLTOGAannotvGalGal6v1,60 augustusGene,203 black gap,72 gap,111 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,522 refGene,340 xenoRefGene,306 blastz transMapEnsemblV5,78 transMapEnsemblV5,196 transMapEstV5,47 transMapEstV5,165 transMapRefSeqV5,47 transMapRefSeqV5,165 transMapRnaV5,47 transMapRnaV5,165 transMapV5,48 transMapV5,144 transMapV5,271 blat mrna,398 mrna,520 refGene,261 refGene,338 transMapEnsemblV5,167 transMapEstV5,136 transMapRefSeqV5,136 transMapRnaV5,136 transMapV5,126 transMapV5,150 transMapV5,157 transMapV5,242 xenoRefGene,228 blat--the xenoRefGene,305 blocks gold,108 gold,135 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 blumer HLTOGAannotvGalGal6v1,344 bm HLTOGAannotvGalGal6v1,335 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both refGene,159 refGene,230 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 boundaries HLTOGAannotvGalGal6v1,111 gold,83 box gap,112 mrna,154 mrna,165 mrna,205 refGene,249 xenoRefGene,216 boxes gap,73 mrna,125 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch transMapEnsemblV5,220 transMapEstV5,189 transMapRefSeqV5,189 transMapRnaV5,189 transMapV5,295 branch-point augustusGene,55 brejov transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 brian uniprot,1959 bridge gold,133 bridged gap,101 briefly uniprot,778 brown gap,17 gold,19 gold,93 gold,107 mrna,1 mrna,4 mrna,19 mrna,388 refGene,16 refGene,257 refGene,356 transMapEnsemblV5,90 transMapEnsemblV5,203 transMapEnsemblV5,334 transMapEstV5,59 transMapEstV5,172 transMapEstV5,303 transMapRefSeqV5,59 transMapRefSeqV5,172 transMapRefSeqV5,303 transMapRnaV5,59 transMapRnaV5,172 transMapRnaV5,303 transMapV5,60 transMapV5,278 transMapV5,409 xenoRefGene,24 xenoRefGene,224 xenoRefGene,322 browser cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 mrna,172 mrna,296 mrna,313 transMapEnsemblV5,37 transMapEnsemblV5,165 transMapEnsemblV5,533 transMapEstV5,35 transMapEstV5,134 transMapEstV5,502 transMapRefSeqV5,35 transMapRefSeqV5,134 transMapRefSeqV5,502 transMapRnaV5,35 transMapRnaV5,134 transMapRnaV5,502 transMapV5,34 transMapV5,240 transMapV5,608 uniprot,1544 uniprot,1721 browsing uniprot,1662 build uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but HLTOGAannotvGalGal6v1,194 HLTOGAannotvGalGal6v1,249 rmsk,311 uniprot,638 uniprot,1047 by HLTOGAannotvGalGal6v1,319 augustusGene,147 augustusGene,266 augustusGene,282 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 gap,94 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,86 microsat,110 mrna,214 mrna,460 refGene,135 refGene,140 refGene,204 refGene,222 refGene,228 refGene,325 refGene,330 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,229 transMapEnsemblV5,398 transMapEnsemblV5,681 transMapEnsemblV5,699 transMapEnsemblV5,705 transMapEnsemblV5,743 transMapEstV5,21 transMapEstV5,198 transMapEstV5,367 transMapEstV5,650 transMapEstV5,668 transMapEstV5,674 transMapEstV5,712 transMapRefSeqV5,21 transMapRefSeqV5,198 transMapRefSeqV5,367 transMapRefSeqV5,650 transMapRefSeqV5,668 transMapRefSeqV5,674 transMapRefSeqV5,712 transMapRnaV5,21 transMapRnaV5,198 transMapRnaV5,367 transMapRnaV5,650 transMapRnaV5,668 transMapRnaV5,674 transMapRnaV5,712 transMapV5,20 transMapV5,304 transMapV5,473 transMapV5,756 transMapV5,774 transMapV5,780 transMapV5,818 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c HLTOGAannotvGalGal6v1,337 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 transMapEnsemblV5,728 transMapEnsemblV5,734 transMapEstV5,697 transMapEstV5,703 transMapRefSeqV5,697 transMapRefSeqV5,703 transMapRnaV5,697 transMapRnaV5,703 transMapV5,803 transMapV5,809 windowmaskerSdust,30 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 can augustusGene,98 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 mrna,67 mrna,198 refGene,120 rmsk,116 simpleRepeat,35 transMapEnsemblV5,526 transMapEnsemblV5,555 transMapEnsemblV5,610 transMapEnsemblV5,618 transMapEnsemblV5,641 transMapEnsemblV5,647 transMapEstV5,495 transMapEstV5,524 transMapEstV5,579 transMapEstV5,587 transMapEstV5,610 transMapEstV5,616 transMapRefSeqV5,495 transMapRefSeqV5,524 transMapRefSeqV5,579 transMapRefSeqV5,587 transMapRefSeqV5,610 transMapRefSeqV5,616 transMapRnaV5,495 transMapRnaV5,524 transMapRnaV5,579 transMapRnaV5,587 transMapRnaV5,610 transMapRnaV5,616 transMapV5,601 transMapV5,630 transMapV5,685 transMapV5,693 transMapV5,716 transMapV5,722 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,87 cannot uniprot,1269 cases uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 cavanaugh mrna,466 cb transMapEnsemblV5,794 transMapEstV5,763 transMapRefSeqV5,763 transMapRnaV5,763 transMapV5,869 cdna augustusGene,299 transMapEnsemblV5,391 transMapEnsemblV5,687 transMapEnsemblV5,770 transMapEstV5,360 transMapEstV5,656 transMapEstV5,739 transMapRefSeqV5,360 transMapRefSeqV5,656 transMapRefSeqV5,739 transMapRnaV5,360 transMapRnaV5,656 transMapRnaV5,739 transMapV5,15 transMapV5,466 transMapV5,762 transMapV5,845 cdnas transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 cds HLTOGAannotvGalGal6v1,148 HLTOGAannotvGalGal6v1,170 HLTOGAannotvGalGal6v1,182 HLTOGAannotvGalGal6v1,203 HLTOGAannotvGalGal6v1,217 HLTOGAannotvGalGal6v1,229 HLTOGAannotvGalGal6v1,248 cell uniprot,563 cerevisiae augustusGene,222 certain rmsk,301 cesar HLTOGAannotvGalGal6v1,102 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain transMapV5,138 uniprot,290 chains transMapEnsemblV5,80 transMapEnsemblV5,198 transMapEnsemblV5,212 transMapEnsemblV5,258 transMapEnsemblV5,283 transMapEnsemblV5,331 transMapEnsemblV5,513 transMapEstV5,49 transMapEstV5,167 transMapEstV5,181 transMapEstV5,227 transMapEstV5,252 transMapEstV5,300 transMapEstV5,482 transMapRefSeqV5,49 transMapRefSeqV5,167 transMapRefSeqV5,181 transMapRefSeqV5,227 transMapRefSeqV5,252 transMapRefSeqV5,300 transMapRefSeqV5,482 transMapRnaV5,49 transMapRnaV5,167 transMapRnaV5,181 transMapRnaV5,227 transMapRnaV5,252 transMapRnaV5,300 transMapRnaV5,482 transMapV5,50 transMapV5,87 transMapV5,273 transMapV5,287 transMapV5,333 transMapV5,358 transMapV5,406 transMapV5,588 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,71 changed rmsk,285 uniprot,1382 characteristic mrna,276 checkbox uniprot,231 chicken HLTOGAannotvGalGal6v1,7 HLTOGAannotvGalGal6v1,57 augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,232 mrna,271 uniprot,657 chosen mrna,294 chr6 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,158 chrom transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1819 chromosome cytoBandIdeo,1 uniprot,1416 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 clark mrna,468 class rmsk,199 rmsk,253 classes rmsk,150 classification HLTOGAannotvGalGal6v1,140 HLTOGAannotvGalGal6v1,304 rmsk,266 rmsk,282 classify HLTOGAannotvGalGal6v1,256 classifying HLTOGAannotvGalGal6v1,35 clawson gc5BaseBw,83 cleaved uniprot,249 click gc5BaseBw,56 refGene,143 refGene,247 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEstV5,105 transMapEstV5,119 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRnaV5,105 transMapRnaV5,119 transMapV5,211 transMapV5,225 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking HLTOGAannotvGalGal6v1,294 uniprot,1633 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 cm refGene,367 xenoRefGene,333 code transMapEnsemblV5,624 transMapEnsemblV5,638 transMapEstV5,593 transMapEstV5,607 transMapRefSeqV5,593 transMapRefSeqV5,607 transMapRnaV5,593 transMapRnaV5,607 transMapV5,699 transMapV5,713 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding HLTOGAannotvGalGal6v1,113 HLTOGAannotvGalGal6v1,149 refGene,245 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 refGene,171 refGene,178 refGene,193 refGene,223 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 refGene,198 refGene,205 xenoRefGene,165 xenoRefGene,172 cognate transMapEnsemblV5,180 transMapEstV5,149 transMapRefSeqV5,149 transMapRnaV5,149 transMapV5,255 coiled-coil uniprot,367 collection refGene,29 xenoRefGene,33 color genscan,86 genscan,96 mrna,77 mrna,273 refGene,91 refGene,202 rmsk,207 xenoRefGene,58 xenoRefGene,169 color-coded HLTOGAannotvGalGal6v1,139 coloration gold,94 colored mrna,373 transMapEnsemblV5,146 transMapEstV5,115 transMapRefSeqV5,115 transMapRnaV5,115 transMapV5,221 uniprot,160 uniprot,176 coloring genscan,116 mrna,333 mrna,360 refGene,172 refGene,179 refGene,217 transMapEnsemblV5,115 transMapEstV5,84 transMapRefSeqV5,84 transMapRnaV5,84 transMapV5,190 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors refGene,114 refGene,194 xenoRefGene,81 xenoRefGene,161 columns transMapEnsemblV5,553 transMapEstV5,522 transMapRefSeqV5,522 transMapRnaV5,522 transMapV5,628 combination mrna,235 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 transMapEnsemblV5,256 transMapEstV5,225 transMapRefSeqV5,225 transMapRnaV5,225 transMapV5,331 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative transMapEnsemblV5,744 transMapEnsemblV5,799 transMapEstV5,713 transMapEstV5,768 transMapRefSeqV5,713 transMapRefSeqV5,768 transMapRnaV5,713 transMapRnaV5,768 transMapV5,819 transMapV5,874 compare mrna,342 refGene,188 transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 xenoRefGene,155 compared transMapV5,154 comparison genscan,109 uniprot,1260 compiled transMapEnsemblV5,620 transMapEstV5,589 transMapRefSeqV5,589 transMapRnaV5,589 transMapV5,695 uniprot,1771 complete genscan,213 completely refGene,170 uniprot,1464 xenoRefGene,137 complexity rmsk,30 rmsk,182 component gold,136 composed uniprot,1396 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,812 transMapEstV5,781 transMapRefSeqV5,781 transMapRnaV5,781 transMapV5,887 computational genscan,196 uniprot,51 computed transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 comstock transMapEnsemblV5,725 transMapEstV5,694 transMapRefSeqV5,694 transMapRnaV5,694 transMapV5,800 concerning refGene,61 conditional augustusGene,118 configuration HLTOGAannotvGalGal6v1,131 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,30 refGene,79 rmsk,138 transMapEnsemblV5,95 transMapEstV5,64 transMapRefSeqV5,64 transMapRnaV5,64 transMapV5,170 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,46 configured gc5BaseBw,42 mrna,329 refGene,122 transMapEnsemblV5,111 transMapEstV5,80 transMapRefSeqV5,80 transMapRnaV5,80 transMapV5,186 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,232 transMapEstV5,201 transMapRefSeqV5,201 transMapRnaV5,201 transMapV5,307 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,166 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 containing transMapEnsemblV5,548 transMapEstV5,517 transMapRefSeqV5,517 transMapRnaV5,517 transMapV5,623 contains gap,118 mrna,191 refGene,175 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,142 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gap,125 gold,82 contigs gap,85 gap,128 gold,74 gold,99 gold,116 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refGene,125 xenoRefGene,92 convenience uniprot,404 conventions HLTOGAannotvGalGal6v1,129 genscan,62 genscan,70 mrna,28 mrna,36 refGene,77 refGene,85 rmsk,136 transMapEnsemblV5,93 transMapEnsemblV5,101 transMapEstV5,62 transMapEstV5,70 transMapRefSeqV5,62 transMapRefSeqV5,70 transMapRnaV5,62 transMapRnaV5,70 transMapV5,168 transMapV5,176 uniprot,447 xenoRefGene,44 xenoRefGene,52 converted uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refGene,56 corresponding transMapEnsemblV5,259 transMapEstV5,228 transMapRefSeqV5,228 transMapRnaV5,228 transMapV5,334 corresponds mrna,174 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,131 counts gold,143 coverage uniprot,1485 covered gap,25 gold,27 cow transMapEnsemblV5,451 transMapEstV5,420 transMapRefSeqV5,420 transMapRnaV5,420 transMapV5,526 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create windowmaskerSdust,48 created microsat,89 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 credits HLTOGAannotvGalGal6v1,314 augustusGene,247 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 gc5BaseBw,71 genscan,169 microsat,104 mrna,441 refGene,313 rmsk,325 simpleRepeat,66 transMapEnsemblV5,676 transMapEstV5,645 transMapRefSeqV5,645 transMapRnaV5,645 transMapV5,751 uniprot,1938 xenoRefGene,280 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,249 mrna,267 mrna,305 mrna,323 transMapEnsemblV5,359 transMapEstV5,328 transMapRefSeqV5,328 transMapRnaV5,328 transMapV5,434 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 culex augustusGene,220 curated refGene,329 refGene,407 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curator rmsk,261 curr rmsk,407 rmsk,429 current mrna,109 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,79 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d HLTOGAannotvGalGal6v1,341 augustusGene,293 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 genscan,192 gold,149 transMapEnsemblV5,764 transMapEnsemblV5,798 transMapEstV5,733 transMapEstV5,767 transMapRefSeqV5,733 transMapRefSeqV5,767 transMapRnaV5,733 transMapRnaV5,767 transMapV5,839 transMapV5,873 d23-6 mrna,513 d36-42 mrna,487 d501-4 refGene,425 xenoRefGene,391 d71-5 uniprot,2005 d756-63 refGene,391 xenoRefGene,357 da mrna,465 mrna,493 dark refGene,108 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darkly mrna,50 data HLTOGAannotvGalGal6v1,316 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 gap,97 gc5BaseBw,73 microsat,47 mrna,452 refGene,32 refGene,323 rmsk,126 rmsk,287 transMapEnsemblV5,518 transMapEnsemblV5,522 transMapEnsemblV5,536 transMapEnsemblV5,573 transMapEnsemblV5,577 transMapEnsemblV5,691 transMapEstV5,487 transMapEstV5,491 transMapEstV5,505 transMapEstV5,542 transMapEstV5,546 transMapEstV5,660 transMapRefSeqV5,487 transMapRefSeqV5,491 transMapRefSeqV5,505 transMapRefSeqV5,542 transMapRefSeqV5,546 transMapRefSeqV5,660 transMapRnaV5,487 transMapRnaV5,491 transMapRnaV5,505 transMapRnaV5,542 transMapRnaV5,546 transMapRnaV5,660 transMapV5,593 transMapV5,597 transMapV5,611 transMapV5,648 transMapV5,652 transMapV5,766 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,36 xenoRefGene,290 database mrna,485 mrna,511 refGene,389 refGene,410 refGene,423 rmsk,125 rmsk,368 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,241 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases mrna,459 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 davis transMapEnsemblV5,727 transMapEstV5,696 transMapRefSeqV5,696 transMapRnaV5,696 transMapV5,802 de augustusGene,303 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec rmsk,412 rmsk,434 transMapEnsemblV5,749 transMapEnsemblV5,815 transMapEstV5,718 transMapEstV5,784 transMapRefSeqV5,718 transMapRefSeqV5,784 transMapRnaV5,718 transMapRnaV5,784 transMapV5,824 transMapV5,890 default cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 refGene,136 refGene,229 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined uniprot,305 uniprot,1387 definition gap,40 gold,42 deletion mrna,382 rmsk,220 delivered gap,52 gold,51 dense gold,68 mrna,42 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,72 windowmaskerSdust,15 deprecated uniprot,1044 derived uniprot,830 described genscan,161 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,61 gold,60 description HLTOGAannotvGalGal6v1,15 augustusGene,12 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,12 mrna,58 refGene,9 refGene,132 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,234 transMapEstV5,12 transMapEstV5,203 transMapRefSeqV5,13 transMapRefSeqV5,203 transMapRnaV5,13 transMapRnaV5,203 transMapV5,11 transMapV5,309 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed uniprot,1355 desired mrna,234 destination transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 destined uniprot,244 destuniq transMapEnsemblV5,436 transMapEstV5,405 transMapRefSeqV5,405 transMapRnaV5,405 transMapV5,511 detail genscan,164 detailed augustusGene,90 rmsk,37 uniprot,692 details rmsk,119 transMapEnsemblV5,236 transMapEstV5,205 transMapRefSeqV5,205 transMapRnaV5,205 transMapV5,311 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 determine HLTOGAannotvGalGal6v1,107 transMapV5,91 determined windowmaskerSdust,19 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 rmsk,410 rmsk,432 developed cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 dfam rmsk,112 dg HLTOGAannotvGalGal6v1,351 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 transMapEnsemblV5,683 transMapEnsemblV5,716 transMapEnsemblV5,759 transMapEnsemblV5,791 transMapEstV5,652 transMapEstV5,685 transMapEstV5,728 transMapEstV5,760 transMapRefSeqV5,652 transMapRefSeqV5,685 transMapRefSeqV5,728 transMapRefSeqV5,760 transMapRnaV5,652 transMapRnaV5,685 transMapRnaV5,728 transMapRnaV5,760 transMapV5,758 transMapV5,791 transMapV5,834 transMapV5,866 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 gc5BaseBw,50 genscan,54 refGene,69 rmsk,149 uniprot,634 difficult transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 uniprot,993 directory rmsk,134 discarded refGene,271 transMapEnsemblV5,383 transMapEstV5,352 transMapRefSeqV5,352 transMapRnaV5,352 transMapV5,458 xenoRefGene,238 discovery transMapEnsemblV5,738 transMapEstV5,707 transMapRefSeqV5,707 transMapRnaV5,707 transMapV5,813 discussion rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display HLTOGAannotvGalGal6v1,128 genscan,61 genscan,69 genscan,104 gold,131 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 refGene,76 refGene,84 refGene,113 refGene,149 refGene,192 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEnsemblV5,113 transMapEstV5,61 transMapEstV5,69 transMapEstV5,82 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRefSeqV5,82 transMapRnaV5,61 transMapRnaV5,69 transMapRnaV5,82 transMapV5,167 transMapV5,175 transMapV5,188 uniprot,446 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 refGene,237 xenoRefGene,204 displays cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant transMapEnsemblV5,270 transMapEstV5,239 transMapRefSeqV5,239 transMapRnaV5,239 transMapV5,64 transMapV5,345 distinguish HLTOGAannotvGalGal6v1,92 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,85 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged transMapV5,152 divided uniprot,56 dj mrna,473 mrna,497 dl mrna,501 dna cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 uniprot,168 uniprot,1129 doc rmsk,132 document gap,58 gold,57 documentation gap,30 gold,32 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 download transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 uniprot,1744 uniprot,1983 downloaded transMapEnsemblV5,557 transMapEnsemblV5,626 transMapEstV5,526 transMapEstV5,595 transMapRefSeqV5,526 transMapRefSeqV5,595 transMapRnaV5,526 transMapRnaV5,595 transMapV5,632 transMapV5,701 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,636 transMapEstV5,605 transMapRefSeqV5,605 transMapRnaV5,605 transMapV5,711 uniprot,1787 downloads rmsk,76 uniprot,1698 dr refGene,401 xenoRefGene,367 draft gold,150 drawn gap,108 gold,127 draws uniprot,1532 drosophila augustusGene,213 due HLTOGAannotvGalGal6v1,207 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 duplications transMapEnsemblV5,312 transMapEnsemblV5,510 transMapEstV5,281 transMapEstV5,479 transMapRefSeqV5,281 transMapRefSeqV5,479 transMapRnaV5,281 transMapRnaV5,479 transMapV5,387 transMapV5,585 e HLTOGAannotvGalGal6v1,339 uniprot,2021 e.g uniprot,398 uniprot,467 e247 transMapEnsemblV5,818 transMapEstV5,787 transMapRefSeqV5,787 transMapRnaV5,787 transMapV5,893 eabn3107 HLTOGAannotvGalGal6v1,370 each HLTOGAannotvGalGal6v1,132 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,163 transMapEnsemblV5,389 transMapEnsemblV5,403 transMapEnsemblV5,412 transMapEnsemblV5,431 transMapEstV5,358 transMapEstV5,372 transMapEstV5,381 transMapEstV5,400 transMapRefSeqV5,358 transMapRefSeqV5,372 transMapRefSeqV5,381 transMapRefSeqV5,400 transMapRnaV5,358 transMapRnaV5,372 transMapRnaV5,381 transMapRnaV5,400 transMapV5,464 transMapV5,478 transMapV5,487 transMapV5,506 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either gap,87 rmsk,273 uniprot,816 uniprot,1398 electronic rmsk,371 element rmsk,228 elements rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 encode HLTOGAannotvGalGal6v1,161 HLTOGAannotvGalGal6v1,191 HLTOGAannotvGalGal6v1,267 HLTOGAannotvGalGal6v1,290 end rmsk,245 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 uniprot,126 uniprot,210 uniprot,1823 enough HLTOGAannotvGalGal6v1,254 ensembl transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,592 transMapEnsemblV5,708 transMapEstV5,561 transMapEstV5,677 transMapRefSeqV5,561 transMapRefSeqV5,677 transMapRnaV5,561 transMapRnaV5,677 transMapV5,667 transMapV5,783 uniprot,731 uniprot,834 uniprot,865 ensure transMapEnsemblV5,385 transMapEstV5,354 transMapRefSeqV5,354 transMapRnaV5,354 transMapV5,460 entered mrna,200 mrna,210 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 ermolaeva refGene,364 xenoRefGene,330 especially mrna,101 est mrna,11 transMapEnsemblV5,689 transMapEstV5,4 transMapEstV5,18 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 ests transMapEnsemblV5,177 transMapEnsemblV5,601 transMapEstV5,2 transMapEstV5,146 transMapEstV5,570 transMapRefSeqV5,146 transMapRefSeqV5,570 transMapRnaV5,146 transMapRnaV5,570 transMapV5,252 transMapV5,676 et HLTOGAannotvGalGal6v1,354 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 refGene,374 transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every uniprot,1571 evidence HLTOGAannotvGalGal6v1,196 HLTOGAannotvGalGal6v1,250 HLTOGAannotvGalGal6v1,283 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew mrna,477 ewing transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 exact uniprot,1622 uniprot,1747 example mrna,132 mrna,185 rmsk,256 transMapEnsemblV5,448 transMapEnsemblV5,660 transMapEstV5,417 transMapEstV5,629 transMapRefSeqV5,417 transMapRefSeqV5,629 transMapRnaV5,417 transMapRnaV5,629 transMapV5,97 transMapV5,523 transMapV5,735 uniprot,1450 uniprot,1811 uniprot,1901 except uniprot,508 exclude mrna,80 mrna,285 mrna,291 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exhibits HLTOGAannotvGalGal6v1,154 HLTOGAannotvGalGal6v1,183 HLTOGAannotvGalGal6v1,230 exist cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,97 exon HLTOGAannotvGalGal6v1,312 augustusGene,86 exons HLTOGAannotvGalGal6v1,114 genscan,44 transMapEnsemblV5,742 transMapEstV5,711 transMapRefSeqV5,711 transMapRnaV5,711 transMapV5,817 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense transMapEnsemblV5,297 transMapEstV5,266 transMapRefSeqV5,266 transMapRnaV5,266 transMapV5,372 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 uniprot,1716 expressed mrna,140 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,552 transMapEstV5,521 transMapRefSeqV5,521 transMapRnaV5,521 transMapV5,627 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 f gold,154 refGene,361 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor mrna,177 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 genscan,60 refGene,75 rmsk,321 transMapEnsemblV5,579 transMapEstV5,548 transMapRefSeqV5,548 transMapRnaV5,548 transMapV5,654 uniprot,1839 far uniprot,599 farrell refGene,366 xenoRefGene,332 feature genscan,129 mrna,335 refGene,180 refGene,213 transMapEnsemblV5,117 transMapEstV5,86 transMapRefSeqV5,86 transMapRnaV5,86 transMapV5,192 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,147 xenoRefGene,180 features refGene,116 transMapEnsemblV5,654 transMapEstV5,623 transMapRefSeqV5,623 transMapRnaV5,623 transMapV5,729 uniprot,694 uniprot,1805 xenoRefGene,83 feedback refGene,42 uniprot,1445 uniprot,1961 fewer transMapV5,160 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,51 gap,67 gold,50 gold,66 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files transMapEnsemblV5,547 transMapEnsemblV5,581 transMapEstV5,516 transMapEstV5,550 transMapRefSeqV5,516 transMapRefSeqV5,550 transMapRnaV5,516 transMapRnaV5,550 transMapV5,622 transMapV5,656 uniprot,1863 filter genscan,82 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 uniprot,187 uniprot,664 filtered mrna,287 transMapEnsemblV5,77 transMapEnsemblV5,352 transMapEstV5,46 transMapEstV5,321 transMapRefSeqV5,46 transMapRefSeqV5,321 transMapRnaV5,46 transMapRnaV5,321 transMapV5,45 transMapV5,427 uniprot,1480 uniprot,1499 filtering mrna,226 transMapEnsemblV5,238 transMapEnsemblV5,306 transMapEstV5,207 transMapEstV5,275 transMapRefSeqV5,207 transMapRefSeqV5,275 transMapRnaV5,207 transMapRnaV5,275 transMapV5,313 transMapV5,381 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 finds transMapV5,159 finger uniprot,327 finished gold,156 transMapEnsemblV5,363 transMapEstV5,332 transMapRefSeqV5,332 transMapRnaV5,332 transMapV5,438 first uniprot,70 fish augustusGene,201 fix uniprot,851 flag rmsk,294 flags rmsk,296 fly augustusGene,214 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,120 genscan,81 transMapEnsemblV5,589 transMapEstV5,558 transMapRefSeqV5,558 transMapRnaV5,558 transMapV5,664 windowmaskerSdust,56 follows genscan,67 mrna,33 refGene,82 transMapEnsemblV5,98 transMapEnsemblV5,216 transMapEstV5,67 transMapEstV5,185 transMapRefSeqV5,67 transMapRefSeqV5,185 transMapRnaV5,67 transMapRnaV5,185 transMapV5,173 transMapV5,291 xenoRefGene,49 for HLTOGAannotvGalGal6v1,55 HLTOGAannotvGalGal6v1,59 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 refGene,43 refGene,59 refGene,64 refGene,86 refGene,208 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,102 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,190 transMapEnsemblV5,217 transMapEnsemblV5,235 transMapEnsemblV5,266 transMapEnsemblV5,268 transMapEnsemblV5,286 transMapEnsemblV5,290 transMapEnsemblV5,388 transMapEnsemblV5,402 transMapEnsemblV5,411 transMapEnsemblV5,447 transMapEnsemblV5,523 transMapEnsemblV5,538 transMapEnsemblV5,567 transMapEnsemblV5,631 transMapEnsemblV5,635 transMapEnsemblV5,659 transMapEnsemblV5,802 transMapEstV5,36 transMapEstV5,71 transMapEstV5,99 transMapEstV5,116 transMapEstV5,159 transMapEstV5,186 transMapEstV5,204 transMapEstV5,235 transMapEstV5,237 transMapEstV5,255 transMapEstV5,259 transMapEstV5,357 transMapEstV5,371 transMapEstV5,380 transMapEstV5,416 transMapEstV5,492 transMapEstV5,507 transMapEstV5,536 transMapEstV5,600 transMapEstV5,604 transMapEstV5,628 transMapEstV5,771 transMapRefSeqV5,36 transMapRefSeqV5,71 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,159 transMapRefSeqV5,186 transMapRefSeqV5,204 transMapRefSeqV5,235 transMapRefSeqV5,237 transMapRefSeqV5,255 transMapRefSeqV5,259 transMapRefSeqV5,357 transMapRefSeqV5,371 transMapRefSeqV5,380 transMapRefSeqV5,416 transMapRefSeqV5,492 transMapRefSeqV5,507 transMapRefSeqV5,536 transMapRefSeqV5,600 transMapRefSeqV5,604 transMapRefSeqV5,628 transMapRefSeqV5,771 transMapRnaV5,36 transMapRnaV5,71 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,159 transMapRnaV5,186 transMapRnaV5,204 transMapRnaV5,235 transMapRnaV5,237 transMapRnaV5,255 transMapRnaV5,259 transMapRnaV5,357 transMapRnaV5,371 transMapRnaV5,380 transMapRnaV5,416 transMapRnaV5,492 transMapRnaV5,507 transMapRnaV5,536 transMapRnaV5,600 transMapRnaV5,604 transMapRnaV5,628 transMapRnaV5,771 transMapV5,35 transMapV5,62 transMapV5,96 transMapV5,98 transMapV5,151 transMapV5,177 transMapV5,205 transMapV5,222 transMapV5,265 transMapV5,292 transMapV5,310 transMapV5,341 transMapV5,343 transMapV5,361 transMapV5,365 transMapV5,463 transMapV5,477 transMapV5,486 transMapV5,522 transMapV5,598 transMapV5,613 transMapV5,642 transMapV5,706 transMapV5,710 transMapV5,734 transMapV5,877 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format gap,63 gold,62 transMapEnsemblV5,420 transMapEstV5,389 transMapRefSeqV5,389 transMapRnaV5,389 transMapV5,495 formats uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 found augustusGene,100 gold,138 mrna,416 transMapEnsemblV5,643 transMapEstV5,612 transMapRefSeqV5,612 transMapRnaV5,612 transMapV5,718 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 fragments gold,4 free uniprot,1435 from HLTOGAannotvGalGal6v1,21 HLTOGAannotvGalGal6v1,94 HLTOGAannotvGalGal6v1,330 augustusGene,19 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 gap,48 genscan,15 gold,3 gold,47 mrna,7 mrna,449 refGene,23 refGene,200 refGene,320 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,158 transMapEnsemblV5,558 transMapEnsemblV5,621 transMapEnsemblV5,686 transMapEstV5,27 transMapEstV5,127 transMapEstV5,527 transMapEstV5,590 transMapEstV5,655 transMapRefSeqV5,27 transMapRefSeqV5,127 transMapRefSeqV5,527 transMapRefSeqV5,590 transMapRefSeqV5,655 transMapRnaV5,27 transMapRnaV5,127 transMapRnaV5,527 transMapRnaV5,590 transMapRnaV5,655 transMapV5,26 transMapV5,112 transMapV5,233 transMapV5,633 transMapV5,696 transMapV5,761 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,280 transMapEstV5,249 transMapRefSeqV5,249 transMapRnaV5,249 transMapV5,355 uniprot,486 uniprot,528 uniprot,540 functional HLTOGAannotvGalGal6v1,162 HLTOGAannotvGalGal6v1,192 HLTOGAannotvGalGal6v1,269 HLTOGAannotvGalGal6v1,292 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 gc5BaseBw,20 microsat,115 simpleRepeat,75 galgal6 HLTOGAannotvGalGal6v1,3 HLTOGAannotvGalGal6v1,8 HLTOGAannotvGalGal6v1,58 gambiae augustusGene,219 gap gap,1 gap,2 gap,91 gap,102 gap,115 mrna,369 transMapEnsemblV5,142 transMapEstV5,111 transMapRefSeqV5,111 transMapRnaV5,111 transMapV5,217 gaps HLTOGAannotvGalGal6v1,210 gap,12 gap,43 gap,68 gap,124 gap,126 gold,96 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 transMapV5,739 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 transMapEnsemblV5,172 transMapEnsemblV5,175 transMapEstV5,16 transMapEstV5,141 transMapEstV5,144 transMapRefSeqV5,141 transMapRefSeqV5,144 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,141 transMapRnaV5,144 transMapV5,247 transMapV5,250 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,730 gene HLTOGAannotvGalGal6v1,13 HLTOGAannotvGalGal6v1,30 HLTOGAannotvGalGal6v1,47 HLTOGAannotvGalGal6v1,357 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 refGene,7 refGene,44 refGene,70 refGene,87 refGene,141 refGene,156 refGene,161 refGene,189 refGene,218 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,393 transMapEnsemblV5,776 transMapEstV5,10 transMapEstV5,362 transMapEstV5,745 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,362 transMapRefSeqV5,745 transMapRnaV5,11 transMapRnaV5,362 transMapRnaV5,745 transMapV5,9 transMapV5,17 transMapV5,468 transMapV5,851 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-inactivating HLTOGAannotvGalGal6v1,156 gene-rich gc5BaseBw,36 genedx uniprot,1973 generally rmsk,72 uniprot,248 generate rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 refGene,324 rmsk,289 xenoRefGene,291 generating augustusGene,189 genes HLTOGAannotvGalGal6v1,11 HLTOGAannotvGalGal6v1,36 HLTOGAannotvGalGal6v1,101 augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 genscan,2 genscan,6 genscan,59 refGene,2 refGene,4 refGene,5 refGene,12 refGene,21 refGene,74 refGene,227 refGene,235 refGene,246 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,171 transMapEnsemblV5,185 transMapEnsemblV5,292 transMapEnsemblV5,806 transMapEstV5,8 transMapEstV5,57 transMapEstV5,140 transMapEstV5,154 transMapEstV5,261 transMapEstV5,775 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,140 transMapRefSeqV5,154 transMapRefSeqV5,261 transMapRefSeqV5,775 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,140 transMapRnaV5,154 transMapRnaV5,261 transMapRnaV5,775 transMapV5,7 transMapV5,58 transMapV5,73 transMapV5,246 transMapV5,260 transMapV5,367 transMapV5,881 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet rmsk,377 rmsk,409 rmsk,431 genetic rmsk,88 genome HLTOGAannotvGalGal6v1,22 HLTOGAannotvGalGal6v1,64 HLTOGAannotvGalGal6v1,71 augustusGene,31 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 gap,19 gap,21 gold,21 gold,23 mrna,26 mrna,395 mrna,525 refGene,259 refGene,343 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,164 transMapEnsemblV5,181 transMapEnsemblV5,206 transMapEnsemblV5,336 transMapEnsemblV5,347 transMapEnsemblV5,408 transMapEnsemblV5,418 transMapEnsemblV5,452 transMapEnsemblV5,475 transMapEnsemblV5,608 transMapEnsemblV5,746 transMapEstV5,34 transMapEstV5,133 transMapEstV5,150 transMapEstV5,175 transMapEstV5,305 transMapEstV5,316 transMapEstV5,377 transMapEstV5,387 transMapEstV5,421 transMapEstV5,444 transMapEstV5,577 transMapEstV5,715 transMapRefSeqV5,34 transMapRefSeqV5,133 transMapRefSeqV5,150 transMapRefSeqV5,175 transMapRefSeqV5,305 transMapRefSeqV5,316 transMapRefSeqV5,377 transMapRefSeqV5,387 transMapRefSeqV5,421 transMapRefSeqV5,444 transMapRefSeqV5,577 transMapRefSeqV5,715 transMapRnaV5,34 transMapRnaV5,133 transMapRnaV5,150 transMapRnaV5,175 transMapRnaV5,305 transMapRnaV5,316 transMapRnaV5,377 transMapRnaV5,387 transMapRnaV5,421 transMapRnaV5,444 transMapRnaV5,577 transMapRnaV5,715 transMapV5,33 transMapV5,85 transMapV5,239 transMapV5,256 transMapV5,281 transMapV5,411 transMapV5,422 transMapV5,483 transMapV5,493 transMapV5,527 transMapV5,550 transMapV5,683 transMapV5,821 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,226 xenoRefGene,309 genome.bed uniprot,1935 uniprot,1937 genomes cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 refGene,412 rmsk,392 rmsk,406 transMapEnsemblV5,364 transMapEnsemblV5,372 transMapEstV5,333 transMapEstV5,341 transMapRefSeqV5,333 transMapRefSeqV5,341 transMapRnaV5,333 transMapRnaV5,341 transMapV5,439 transMapV5,447 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic HLTOGAannotvGalGal6v1,122 genscan,92 genscan,218 mrna,346 mrna,437 refGene,197 refGene,309 transMapEnsemblV5,128 transMapEstV5,97 transMapRefSeqV5,97 transMapRnaV5,97 transMapV5,203 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,164 xenoRefGene,276 genomics transMapEnsemblV5,745 transMapEnsemblV5,800 transMapEstV5,714 transMapEstV5,769 transMapRefSeqV5,714 transMapRefSeqV5,769 transMapRnaV5,714 transMapRnaV5,769 transMapV5,820 transMapV5,875 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 giri rmsk,92 rmsk,333 github uniprot,1559 github.com HLTOGAannotvGalGal6v1,331 give transMapEnsemblV5,440 transMapEstV5,409 transMapRefSeqV5,409 transMapRnaV5,409 transMapV5,515 given transMapEnsemblV5,484 transMapEnsemblV5,657 transMapEstV5,453 transMapEstV5,626 transMapRefSeqV5,453 transMapRefSeqV5,626 transMapRnaV5,453 transMapRnaV5,626 transMapV5,559 transMapV5,732 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,357 transMapEstV5,326 transMapRefSeqV5,326 transMapRnaV5,326 transMapV5,432 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go genscan,113 mrna,354 mrna,377 refGene,214 uniprot,1412 xenoRefGene,181 gold gold,91 gold,105 goldenpath uniprot,1907 gr refGene,357 xenoRefGene,323 graph gc5BaseBw,59 gc5BaseBw,78 graphical gold,130 rmsk,211 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,195 transMapEstV5,164 transMapRefSeqV5,164 transMapRnaV5,164 transMapV5,270 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hart refGene,368 xenoRefGene,334 has mrna,63 refGene,101 transMapV5,146 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,68 haussler augustusGene,292 transMapEnsemblV5,763 transMapEnsemblV5,797 transMapEstV5,732 transMapEstV5,766 transMapRefSeqV5,732 transMapRefSeqV5,766 transMapRnaV5,732 transMapRnaV5,766 transMapV5,838 transMapV5,872 have rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,410 mrna,419 refGene,282 refGene,291 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 gc5BaseBw,61 refGene,60 helpful mrna,91 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here rmsk,127 transMapEnsemblV5,137 transMapEnsemblV5,151 transMapEnsemblV5,644 transMapEstV5,106 transMapEstV5,120 transMapEstV5,613 transMapRefSeqV5,106 transMapRefSeqV5,120 transMapRefSeqV5,613 transMapRnaV5,106 transMapRnaV5,120 transMapRnaV5,613 transMapV5,212 transMapV5,226 transMapV5,719 uniprot,1795 hg19 uniprot,847 uniprot,860 hg38 HLTOGAannotvGalGal6v1,54 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 transMapEnsemblV5,663 transMapEstV5,632 transMapRefSeqV5,632 transMapRnaV5,632 transMapV5,738 uniprot,1814 uniprot,1906 uniprot,1916 hiatt refGene,358 xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide refGene,225 uniprot,659 uniprot,667 xenoRefGene,192 high gc5BaseBw,29 transMapV5,119 higher cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 rmsk,230 transMapV5,147 highest mrna,412 refGene,284 uniprot,948 uniprot,1113 xenoRefGene,251 highlight gc5BaseBw,49 mrna,282 highlighted mrna,252 mrna,270 uniprot,580 highly microsat,40 hilgers HLTOGAannotvGalGal6v1,352 hiller HLTOGAannotvGalGal6v1,322 hillerlab HLTOGAannotvGalGal6v1,332 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hiram gc5BaseBw,82 homology-based HLTOGAannotvGalGal6v1,26 honeybee1 augustusGene,217 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,488 transMapEstV5,457 transMapRefSeqV5,457 transMapRnaV5,457 transMapV5,563 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 rmsk,355 transMapEnsemblV5,662 transMapEstV5,631 transMapRefSeqV5,631 transMapRnaV5,631 transMapV5,737 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubley rmsk,331 rmsk,349 hum uniprot,2043 human HLTOGAannotvGalGal6v1,53 augustusGene,205 augustusGene,210 augustusGene,276 genscan,217 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,365 transMapEnsemblV5,474 transMapEnsemblV5,741 transMapEnsemblV5,809 transMapEstV5,334 transMapEstV5,443 transMapEstV5,710 transMapEstV5,778 transMapRefSeqV5,334 transMapRefSeqV5,443 transMapRefSeqV5,710 transMapRefSeqV5,778 transMapRnaV5,334 transMapRnaV5,443 transMapRnaV5,710 transMapRnaV5,778 transMapV5,105 transMapV5,134 transMapV5,440 transMapV5,549 transMapV5,816 transMapV5,884 uniprot,699 uniprot,940 uniprot,2040 i mrna,471 mrna,495 id uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified refGene,288 transMapEnsemblV5,515 transMapEstV5,484 transMapRefSeqV5,484 transMapRnaV5,484 transMapV5,590 xenoRefGene,255 identifier transMapEnsemblV5,486 transMapEstV5,455 transMapRefSeqV5,455 transMapRnaV5,455 transMapV5,561 identifiers transMapEnsemblV5,387 transMapEnsemblV5,446 transMapEnsemblV5,464 transMapEstV5,356 transMapEstV5,415 transMapEstV5,433 transMapRefSeqV5,356 transMapRefSeqV5,415 transMapRefSeqV5,433 transMapRnaV5,356 transMapRnaV5,415 transMapRnaV5,433 transMapV5,462 transMapV5,521 transMapV5,539 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,414 mrna,422 mrna,434 refGene,286 refGene,294 refGene,306 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,77 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 refGene,238 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,205 ignored uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implements HLTOGAannotvGalGal6v1,73 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,773 transMapEstV5,742 transMapRefSeqV5,742 transMapRnaV5,742 transMapV5,848 in HLTOGAannotvGalGal6v1,119 HLTOGAannotvGalGal6v1,124 HLTOGAannotvGalGal6v1,137 HLTOGAannotvGalGal6v1,173 HLTOGAannotvGalGal6v1,220 HLTOGAannotvGalGal6v1,242 augustusGene,101 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 gap,13 gap,26 gap,44 gap,74 gap,129 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,28 gold,67 gold,128 gold,139 gold,147 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 refGene,277 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,161 transMapEnsemblV5,338 transMapEnsemblV5,362 transMapEnsemblV5,370 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,495 transMapEnsemblV5,545 transMapEnsemblV5,587 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,130 transMapEstV5,307 transMapEstV5,331 transMapEstV5,339 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,464 transMapEstV5,514 transMapEstV5,556 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,130 transMapRefSeqV5,307 transMapRefSeqV5,331 transMapRefSeqV5,339 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,464 transMapRefSeqV5,514 transMapRefSeqV5,556 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,130 transMapRnaV5,307 transMapRnaV5,331 transMapRnaV5,339 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,464 transMapRnaV5,514 transMapRnaV5,556 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,77 transMapV5,236 transMapV5,413 transMapV5,437 transMapV5,445 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,570 transMapV5,620 transMapV5,662 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,244 inactivating HLTOGAannotvGalGal6v1,185 HLTOGAannotvGalGal6v1,232 HLTOGAannotvGalGal6v1,240 HLTOGAannotvGalGal6v1,275 HLTOGAannotvGalGal6v1,305 include mrna,79 mrna,284 mrna,308 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes rmsk,198 uniprot,1587 including rmsk,188 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate mrna,52 indicates refGene,93 xenoRefGene,60 individual transMapEnsemblV5,603 transMapEstV5,572 transMapRefSeqV5,572 transMapRnaV5,572 transMapV5,678 infer HLTOGAannotvGalGal6v1,19 inference HLTOGAannotvGalGal6v1,361 inferring HLTOGAannotvGalGal6v1,32 information HLTOGAannotvGalGal6v1,300 augustusGene,36 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 gap,35 gc5BaseBw,55 genscan,51 genscan,126 gold,37 microsat,97 mrna,350 mrna,376 refGene,66 refGene,210 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,132 transMapEnsemblV5,149 transMapEnsemblV5,569 transMapEstV5,101 transMapEstV5,118 transMapEstV5,538 transMapRefSeqV5,101 transMapRefSeqV5,118 transMapRefSeqV5,538 transMapRnaV5,101 transMapRnaV5,118 transMapRnaV5,538 transMapV5,207 transMapV5,224 transMapV5,644 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,177 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input HLTOGAannotvGalGal6v1,43 uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insertion mrna,381 rmsk,223 inside uniprot,560 inspection uniprot,1653 instead refGene,153 xenoRefGene,120 institute rmsk,91 instructions transMapEnsemblV5,634 transMapEstV5,603 transMapRefSeqV5,603 transMapRnaV5,603 transMapV5,709 uniprot,1785 intact HLTOGAannotvGalGal6v1,38 HLTOGAannotvGalGal6v1,143 HLTOGAannotvGalGal6v1,166 integrates HLTOGAannotvGalGal6v1,29 integrating HLTOGAannotvGalGal6v1,356 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic HLTOGAannotvGalGal6v1,84 genscan,47 international mrna,456 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 interspersed rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,201 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 intronic HLTOGAannotvGalGal6v1,82 introns genscan,45 is HLTOGAannotvGalGal6v1,24 HLTOGAannotvGalGal6v1,104 HLTOGAannotvGalGal6v1,135 HLTOGAannotvGalGal6v1,151 HLTOGAannotvGalGal6v1,171 HLTOGAannotvGalGal6v1,197 HLTOGAannotvGalGal6v1,218 HLTOGAannotvGalGal6v1,238 HLTOGAannotvGalGal6v1,251 HLTOGAannotvGalGal6v1,281 HLTOGAannotvGalGal6v1,287 HLTOGAannotvGalGal6v1,328 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,47 gap,92 gap,99 gap,107 gc5BaseBw,32 gold,46 gold,120 gold,126 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,277 transMapEnsemblV5,421 transMapEnsemblV5,425 transMapEnsemblV5,437 transMapEnsemblV5,483 transMapEstV5,246 transMapEstV5,390 transMapEstV5,394 transMapEstV5,406 transMapEstV5,452 transMapRefSeqV5,246 transMapRefSeqV5,390 transMapRefSeqV5,394 transMapRefSeqV5,406 transMapRefSeqV5,452 transMapRnaV5,246 transMapRnaV5,390 transMapRnaV5,394 transMapRnaV5,406 transMapRnaV5,452 transMapV5,352 transMapV5,496 transMapV5,500 transMapV5,512 transMapV5,558 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,486 mrna,512 refGene,390 refGene,424 uniprot,2004 xenoRefGene,356 xenoRefGene,390 it gap,98 genscan,143 uniprot,228 uniprot,625 uniprot,1586 item refGene,110 xenoRefGene,77 items mrna,46 mrna,84 mrna,94 mrna,288 refGene,137 xenoRefGene,104 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 genscan,220 mrna,475 mrna,499 refGene,369 rmsk,364 transMapEnsemblV5,788 transMapEstV5,757 transMapRefSeqV5,757 transMapRnaV5,757 transMapV5,863 xenoRefGene,335 jan microsat,129 mrna,483 mrna,508 refGene,387 refGene,420 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,353 xenoRefGene,386 jebb HLTOGAannotvGalGal6v1,340 journal rmsk,372 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jun gap,15 gold,17 jurka rmsk,98 rmsk,363 jz transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 k augustusGene,268 mrna,469 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,470 mrna,494 kasif genscan,193 kd refGene,355 refGene,397 xenoRefGene,321 xenoRefGene,363 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent mrna,518 refGene,336 xenoRefGene,303 kept mrna,440 refGene,312 xenoRefGene,279 kirilenko HLTOGAannotvGalGal6v1,334 kiwi gap,18 gold,20 mrna,2 mrna,5 mrna,20 mrna,389 refGene,17 refGene,258 transMapEnsemblV5,91 transMapEnsemblV5,204 transMapEnsemblV5,335 transMapEstV5,60 transMapEstV5,173 transMapEstV5,304 transMapRefSeqV5,60 transMapRefSeqV5,173 transMapRefSeqV5,304 transMapRnaV5,60 transMapRnaV5,173 transMapRnaV5,304 transMapV5,61 transMapV5,279 transMapV5,410 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 km refGene,373 xenoRefGene,339 known gold,122 refGene,15 xenoRefGene,15 kontopoulos HLTOGAannotvGalGal6v1,350 l HLTOGAannotvGalGal6v1,353 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 lab HLTOGAannotvGalGal6v1,323 augustusGene,252 label genscan,98 refGene,134 refGene,146 refGene,169 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled refGene,139 uniprot,457 xenoRefGene,106 labels refGene,111 xenoRefGene,78 landrum refGene,370 xenoRefGene,336 langton transMapEnsemblV5,721 transMapEstV5,690 transMapRefSeqV5,690 transMapRnaV5,690 transMapV5,796 lastz transMapV5,46 lau transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 learning HLTOGAannotvGalGal6v1,89 least microsat,29 microsat,78 mrna,431 refGene,303 xenoRefGene,270 lee uniprot,1955 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refGene,267 transMapEnsemblV5,375 transMapEstV5,344 transMapRefSeqV5,344 transMapRnaV5,344 transMapV5,450 uniprot,680 xenoRefGene,234 level mrna,423 refGene,95 refGene,295 rmsk,205 xenoRefGene,62 xenoRefGene,262 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries rmsk,340 library rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refGene,104 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,237 like uniprot,1541 likely HLTOGAannotvGalGal6v1,160 augustusGene,111 microsat,17 transMapV5,94 line gap,106 gold,125 rmsk,165 uniprot,1872 uniprot,1876 lineage transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 link gc5BaseBw,63 uniprot,491 uniprot,1675 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,472 mrna,496 lipoification uniprot,577 list mrna,158 uniprot,979 uniprot,1165 uniprot,1831 literature uniprot,434 lk054805.1 gold,159 lm uniprot,2019 loaded windowmaskerSdust,79 located simpleRepeat,21 location transMapEnsemblV5,404 transMapEnsemblV5,414 transMapEnsemblV5,481 transMapEstV5,373 transMapEstV5,383 transMapEstV5,450 transMapRefSeqV5,373 transMapRefSeqV5,383 transMapRefSeqV5,450 transMapRnaV5,373 transMapRnaV5,383 transMapRnaV5,450 transMapV5,479 transMapV5,489 transMapV5,556 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 uniprot,451 locus HLTOGAannotvGalGal6v1,123 logic mrna,236 long rmsk,161 rmsk,166 long-established transMapEnsemblV5,805 transMapEstV5,774 transMapRefSeqV5,774 transMapRnaV5,774 transMapV5,880 loss HLTOGAannotvGalGal6v1,236 losses transMapEnsemblV5,803 transMapEstV5,772 transMapRefSeqV5,772 transMapRnaV5,772 transMapV5,878 lost HLTOGAannotvGalGal6v1,40 HLTOGAannotvGalGal6v1,260 HLTOGAannotvGalGal6v1,272 lot uniprot,1950 low rmsk,29 rmsk,181 lowe transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 ls-snp uniprot,1536 lt HLTOGAannotvGalGal6v1,213 ltr rmsk,170 m HLTOGAannotvGalGal6v1,345 augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,467 transMapEnsemblV5,717 transMapEnsemblV5,724 transMapEnsemblV5,758 transMapEnsemblV5,760 transMapEnsemblV5,792 transMapEstV5,686 transMapEstV5,693 transMapEstV5,727 transMapEstV5,729 transMapEstV5,761 transMapRefSeqV5,686 transMapRefSeqV5,693 transMapRefSeqV5,727 transMapRefSeqV5,729 transMapRefSeqV5,761 transMapRnaV5,686 transMapRnaV5,693 transMapRnaV5,727 transMapRnaV5,729 transMapRnaV5,761 transMapV5,792 transMapV5,799 transMapV5,833 transMapV5,835 transMapV5,867 machine HLTOGAannotvGalGal6v1,88 made rmsk,110 transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 uniprot,931 uniprot,938 maglott refGene,400 xenoRefGene,366 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,76 refGene,51 rmsk,123 transMapEnsemblV5,430 transMapEstV5,399 transMapRefSeqV5,399 transMapRnaV5,399 transMapV5,505 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian refGene,380 rmsk,391 rmsk,405 xenoRefGene,346 mammals HLTOGAannotvGalGal6v1,56 manner uniprot,1469 manual uniprot,1652 many mrna,93 uniprot,932 uniprot,1124 map transMapEnsemblV5,294 transMapEstV5,263 transMapRefSeqV5,263 transMapRnaV5,263 transMapV5,369 uniprot,758 uniprot,1885 mapped augustusGene,298 transMapEnsemblV5,381 transMapEnsemblV5,413 transMapEnsemblV5,471 transMapEnsemblV5,769 transMapEstV5,350 transMapEstV5,382 transMapEstV5,440 transMapEstV5,738 transMapRefSeqV5,350 transMapRefSeqV5,382 transMapRefSeqV5,440 transMapRefSeqV5,738 transMapRnaV5,350 transMapRnaV5,382 transMapRnaV5,440 transMapRnaV5,738 transMapV5,131 transMapV5,456 transMapV5,488 transMapV5,546 transMapV5,844 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 transMapEnsemblV5,267 transMapEnsemblV5,287 transMapEnsemblV5,300 transMapEstV5,236 transMapEstV5,256 transMapEstV5,269 transMapRefSeqV5,236 transMapRefSeqV5,256 transMapRefSeqV5,269 transMapRnaV5,236 transMapRnaV5,256 transMapRnaV5,269 transMapV5,342 transMapV5,362 transMapV5,375 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,503 transMapEstV5,5 transMapEstV5,472 transMapRefSeqV5,6 transMapRefSeqV5,472 transMapRnaV5,6 transMapRnaV5,472 transMapV5,578 uniprot,1362 maps transMapEnsemblV5,477 transMapEnsemblV5,490 transMapEstV5,446 transMapEstV5,459 transMapRefSeqV5,446 transMapRefSeqV5,459 transMapRnaV5,446 transMapRnaV5,459 transMapV5,72 transMapV5,552 transMapV5,565 mar augustusGene,309 transMapEnsemblV5,780 transMapEstV5,749 transMapRefSeqV5,749 transMapRnaV5,749 transMapV5,855 mario augustusGene,102 augustusGene,283 mark transMapEnsemblV5,682 transMapEstV5,651 transMapRefSeqV5,651 transMapRnaV5,651 transMapV5,757 uniprot,1539 uniprot,1956 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match mrna,246 mrna,261 mrna,302 mrna,320 uniprot,1305 uniprot,1341 matches mrna,53 matching uniprot,1068 uniprot,1075 mature unipChain,3 uniprot,251 uniprot,292 maximally cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 maximilian uniprot,1944 maxtracks augustusGene,139 may HLTOGAannotvGalGal6v1,189 HLTOGAannotvGalGal6v1,263 HLTOGAannotvGalGal6v1,265 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEstV5,77 transMapEstV5,112 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRnaV5,77 transMapRnaV5,112 transMapV5,183 transMapV5,218 uniprot,2046 mcgarvey refGene,372 xenoRefGene,338 md5 uniprot,1601 mediating uniprot,314 medium refGene,106 xenoRefGene,73 mellifera augustusGene,216 mementos rmsk,400 menu refGene,207 xenoRefGene,174 method HLTOGAannotvGalGal6v1,27 uniprot,726 uniprot,753 uniprot,776 methods HLTOGAannotvGalGal6v1,41 augustusGene,46 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 genscan,130 genscan,197 microsat,45 mrna,386 refGene,250 rmsk,286 simpleRepeat,55 transMapEnsemblV5,152 transMapEstV5,121 transMapRefSeqV5,121 transMapRnaV5,121 transMapV5,227 uniprot,777 windowmaskerSdust,46 xenoRefGene,217 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael HLTOGAannotvGalGal6v1,321 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 middle HLTOGAannotvGalGal6v1,144 HLTOGAannotvGalGal6v1,178 HLTOGAannotvGalGal6v1,225 HLTOGAannotvGalGal6v1,244 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 mismatch rmsk,218 misplacements uniprot,853 missing HLTOGAannotvGalGal6v1,205 HLTOGAannotvGalGal6v1,212 mj refGene,371 xenoRefGene,337 mk_counts windowmaskerSdust,59 mode gold,69 mrna,44 mrna,74 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 morales HLTOGAannotvGalGal6v1,346 more augustusGene,35 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 genscan,50 genscan,125 genscan,163 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 refGene,65 refGene,209 rmsk,323 simpleRepeat,57 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,224 transMapEnsemblV5,269 transMapEnsemblV5,291 transMapEnsemblV5,568 transMapEstV5,100 transMapEstV5,117 transMapEstV5,193 transMapEstV5,238 transMapEstV5,260 transMapEstV5,537 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,193 transMapRefSeqV5,238 transMapRefSeqV5,260 transMapRefSeqV5,537 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,193 transMapRnaV5,238 transMapRnaV5,260 transMapRnaV5,537 transMapV5,63 transMapV5,107 transMapV5,164 transMapV5,206 transMapV5,223 transMapV5,299 transMapV5,344 transMapV5,366 transMapV5,643 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,176 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 transMapV5,93 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse transMapEnsemblV5,44 transMapEnsemblV5,367 transMapEstV5,336 transMapRefSeqV5,336 transMapRnaV5,336 transMapV5,442 uniprot,521 uniprot,535 mrna mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 transMapEnsemblV5,458 transMapEstV5,427 transMapRefSeqV5,427 transMapRnaV5,18 transMapRnaV5,427 transMapV5,100 transMapV5,533 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 transMapEnsemblV5,173 transMapEstV5,142 transMapRefSeqV5,142 transMapRnaV5,142 transMapV5,111 transMapV5,248 mujica uniprot,1967 multiple mrna,206 mrna,406 refGene,278 transMapEnsemblV5,501 transMapEstV5,470 transMapRefSeqV5,470 transMapRnaV5,470 transMapV5,576 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,245 munegowda HLTOGAannotvGalGal6v1,336 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation HLTOGAannotvGalGal6v1,157 HLTOGAannotvGalGal6v1,186 HLTOGAannotvGalGal6v1,233 HLTOGAannotvGalGal6v1,241 mutation-related uniprot,408 mutations HLTOGAannotvGalGal6v1,276 HLTOGAannotvGalGal6v1,306 unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 name mrna,147 refGene,142 refGene,152 refGene,157 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names refGene,164 xenoRefGene,131 native augustusGene,295 transMapEnsemblV5,766 transMapEstV5,735 transMapRefSeqV5,735 transMapRnaV5,735 transMapV5,123 transMapV5,841 nbci uniprot,822 nbsp HLTOGAannotvGalGal6v1,142 HLTOGAannotvGalGal6v1,164 HLTOGAannotvGalGal6v1,211 HLTOGAannotvGalGal6v1,234 HLTOGAannotvGalGal6v1,271 ncbi gap,28 gap,31 gap,57 gold,30 gold,33 gold,56 refGene,25 refGene,332 refGene,402 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 near-best transMapEnsemblV5,358 transMapEstV5,327 transMapRefSeqV5,327 transMapRnaV5,327 transMapV5,433 nematodes augustusGene,211 net transMapV5,140 netfilter transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 nets transMapEnsemblV5,200 transMapEnsemblV5,243 transMapEnsemblV5,249 transMapEnsemblV5,263 transMapEstV5,169 transMapEstV5,212 transMapEstV5,218 transMapEstV5,232 transMapRefSeqV5,169 transMapRefSeqV5,212 transMapRefSeqV5,218 transMapRefSeqV5,232 transMapRnaV5,169 transMapRnaV5,212 transMapRnaV5,218 transMapRnaV5,232 transMapV5,89 transMapV5,275 transMapV5,318 transMapV5,324 transMapV5,338 new augustusGene,329 newer rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 nig augustusGene,270 no HLTOGAannotvGalGal6v1,155 HLTOGAannotvGalGal6v1,184 HLTOGAannotvGalGal6v1,231 microsat,73 transMapEnsemblV5,223 transMapEstV5,192 transMapRefSeqV5,192 transMapRnaV5,192 transMapV5,298 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-brown xenoRefGene,3 non-coding augustusGene,75 refGene,226 xenoRefGene,193 non-protein-coding refGene,20 refGene,234 xenoRefGene,18 xenoRefGene,201 non-redundant refGene,408 xenoRefGene,374 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not HLTOGAannotvGalGal6v1,252 HLTOGAannotvGalGal6v1,266 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 mrna,298 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note transMapEnsemblV5,499 transMapEstV5,468 transMapRefSeqV5,468 transMapRnaV5,468 transMapV5,574 uniprot,695 novel HLTOGAannotvGalGal6v1,75 transMapEnsemblV5,740 transMapEstV5,709 transMapRefSeqV5,709 transMapRnaV5,709 transMapV5,815 novo augustusGene,304 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 now uniprot,1680 nuclear rmsk,155 rmsk,163 nucleic microsat,125 mrna,479 mrna,504 refGene,383 refGene,416 simpleRepeat,85 uniprot,1997 xenoRefGene,349 xenoRefGene,382 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 transMapEnsemblV5,427 transMapEnsemblV5,550 transMapEstV5,396 transMapEstV5,519 transMapRefSeqV5,396 transMapRefSeqV5,519 transMapRnaV5,396 transMapRnaV5,519 transMapV5,502 transMapV5,625 o refGene,365 xenoRefGene,331 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 transMapEnsemblV5,157 transMapEnsemblV5,612 transMapEstV5,126 transMapEstV5,581 transMapRefSeqV5,126 transMapRefSeqV5,581 transMapRnaV5,126 transMapRnaV5,581 transMapV5,232 transMapV5,687 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 of HLTOGAannotvGalGal6v1,49 HLTOGAannotvGalGal6v1,81 HLTOGAannotvGalGal6v1,112 HLTOGAannotvGalGal6v1,115 HLTOGAannotvGalGal6v1,146 HLTOGAannotvGalGal6v1,168 HLTOGAannotvGalGal6v1,180 HLTOGAannotvGalGal6v1,201 HLTOGAannotvGalGal6v1,215 HLTOGAannotvGalGal6v1,227 HLTOGAannotvGalGal6v1,246 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 gap,41 gap,64 gap,83 gap,89 gap,123 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,43 gold,63 gold,89 gold,114 gold,144 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 refGene,96 refGene,115 refGene,129 refGene,154 refGene,266 refGene,298 refGene,411 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,140 transMapEnsemblV5,169 transMapEnsemblV5,209 transMapEnsemblV5,275 transMapEnsemblV5,282 transMapEnsemblV5,298 transMapEnsemblV5,310 transMapEnsemblV5,323 transMapEnsemblV5,341 transMapEnsemblV5,360 transMapEnsemblV5,378 transMapEnsemblV5,457 transMapEnsemblV5,508 transMapEnsemblV5,551 transMapEnsemblV5,739 transMapEnsemblV5,804 transMapEstV5,54 transMapEstV5,109 transMapEstV5,138 transMapEstV5,178 transMapEstV5,244 transMapEstV5,251 transMapEstV5,267 transMapEstV5,279 transMapEstV5,292 transMapEstV5,310 transMapEstV5,329 transMapEstV5,347 transMapEstV5,426 transMapEstV5,477 transMapEstV5,520 transMapEstV5,708 transMapEstV5,773 transMapRefSeqV5,54 transMapRefSeqV5,109 transMapRefSeqV5,138 transMapRefSeqV5,178 transMapRefSeqV5,244 transMapRefSeqV5,251 transMapRefSeqV5,267 transMapRefSeqV5,279 transMapRefSeqV5,292 transMapRefSeqV5,310 transMapRefSeqV5,329 transMapRefSeqV5,347 transMapRefSeqV5,426 transMapRefSeqV5,477 transMapRefSeqV5,520 transMapRefSeqV5,708 transMapRefSeqV5,773 transMapRnaV5,54 transMapRnaV5,109 transMapRnaV5,138 transMapRnaV5,178 transMapRnaV5,244 transMapRnaV5,251 transMapRnaV5,267 transMapRnaV5,279 transMapRnaV5,292 transMapRnaV5,310 transMapRnaV5,329 transMapRnaV5,347 transMapRnaV5,426 transMapRnaV5,477 transMapRnaV5,520 transMapRnaV5,708 transMapRnaV5,773 transMapV5,55 transMapV5,215 transMapV5,244 transMapV5,284 transMapV5,350 transMapV5,357 transMapV5,373 transMapV5,385 transMapV5,398 transMapV5,416 transMapV5,435 transMapV5,453 transMapV5,532 transMapV5,583 transMapV5,626 transMapV5,814 transMapV5,879 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off refGene,167 xenoRefGene,134 offers genscan,79 often HLTOGAannotvGalGal6v1,206 older uniprot,1560 uniprot,1647 on HLTOGAannotvGalGal6v1,79 HLTOGAannotvGalGal6v1,295 augustusGene,29 augustusGene,37 augustusGene,151 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 gap,86 genscan,27 genscan,52 mrna,178 mrna,227 refGene,67 refGene,379 rmsk,74 transMapEnsemblV5,570 transMapEnsemblV5,807 transMapEstV5,539 transMapEstV5,776 transMapRefSeqV5,539 transMapRefSeqV5,776 transMapRnaV5,539 transMapRnaV5,776 transMapV5,103 transMapV5,645 transMapV5,882 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,345 once mrna,212 uniprot,647 one augustusGene,169 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 gold,155 mrna,119 mrna,230 mrna,263 transMapV5,78 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 refGene,243 refGene,289 transMapEnsemblV5,49 transMapEnsemblV5,653 transMapEstV5,622 transMapRefSeqV5,622 transMapRnaV5,622 transMapV5,728 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,210 xenoRefGene,256 oommen transMapEnsemblV5,731 transMapEstV5,700 transMapRefSeqV5,700 transMapRnaV5,700 transMapV5,806 open-3.0 rmsk,354 opin rmsk,408 rmsk,430 option augustusGene,167 augustusGene,187 genscan,94 mrna,353 refGene,147 refGene,199 transMapEnsemblV5,135 transMapEstV5,104 transMapRefSeqV5,104 transMapRnaV5,104 transMapV5,210 xenoRefGene,114 xenoRefGene,166 optional refGene,177 xenoRefGene,144 options gc5BaseBw,70 genscan,85 mrna,384 or HLTOGAannotvGalGal6v1,39 HLTOGAannotvGalGal6v1,96 HLTOGAannotvGalGal6v1,264 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 mrna,120 mrna,255 mrna,274 mrna,283 refGene,57 refGene,165 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,534 transMapEnsemblV5,562 transMapEnsemblV5,605 transMapEnsemblV5,625 transMapEstV5,503 transMapEstV5,531 transMapEstV5,574 transMapEstV5,594 transMapRefSeqV5,503 transMapRefSeqV5,531 transMapRefSeqV5,574 transMapRefSeqV5,594 transMapRnaV5,503 transMapRnaV5,531 transMapRnaV5,574 transMapRnaV5,594 transMapV5,47 transMapV5,609 transMapV5,637 transMapV5,680 transMapV5,700 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,132 order gap,80 gold,111 uniprot,872 organ mrna,144 mrna,150 organisms rmsk,302 transMapEnsemblV5,160 transMapEnsemblV5,218 transMapEstV5,129 transMapEstV5,187 transMapRefSeqV5,129 transMapRefSeqV5,187 transMapRnaV5,129 transMapRnaV5,187 transMapV5,65 transMapV5,153 transMapV5,235 transMapV5,293 uniprot,998 xenoRefGene,21 orientation cytoBandIdeo,6 gap,82 gold,113 origin rmsk,421 orthologous HLTOGAannotvGalGal6v1,121 transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs HLTOGAannotvGalGal6v1,20 HLTOGAannotvGalGal6v1,33 HLTOGAannotvGalGal6v1,93 transMapV5,95 orthology HLTOGAannotvGalGal6v1,303 HLTOGAannotvGalGal6v1,360 osipova HLTOGAannotvGalGal6v1,338 ostell mrna,474 mrna,498 other augustusGene,208 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,371 transMapEstV5,28 transMapEstV5,340 transMapRefSeqV5,28 transMapRefSeqV5,340 transMapRnaV5,28 transMapRnaV5,340 transMapV5,27 transMapV5,446 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,22 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 transMapEnsemblV5,248 transMapEstV5,217 transMapRefSeqV5,217 transMapRnaV5,217 transMapV5,323 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 genscan,58 refGene,73 rmsk,124 rmsk,129 transMapEnsemblV5,559 transMapEnsemblV5,565 transMapEnsemblV5,575 transMapEnsemblV5,614 transMapEstV5,528 transMapEstV5,534 transMapEstV5,544 transMapEstV5,583 transMapRefSeqV5,528 transMapRefSeqV5,534 transMapRefSeqV5,544 transMapRefSeqV5,583 transMapRnaV5,528 transMapRnaV5,534 transMapRnaV5,544 transMapRnaV5,583 transMapV5,634 transMapV5,640 transMapV5,650 transMapV5,689 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside uniprot,558 over cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 uniprot,522 uniprot,536 own uniprot,724 p genscan,205 rmsk,352 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 genscan,78 genscan,123 mrna,59 mrna,364 mrna,385 refGene,49 refGene,133 refGene,224 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,100 xenoRefGene,191 pair gap,96 pairwise transMapEnsemblV5,339 transMapEstV5,308 transMapRefSeqV5,308 transMapRnaV5,308 transMapV5,84 transMapV5,414 paradigm HLTOGAannotvGalGal6v1,76 paralogous transMapEnsemblV5,302 transMapEstV5,271 transMapRefSeqV5,271 transMapRnaV5,271 transMapV5,377 paralogs HLTOGAannotvGalGal6v1,95 transMapV5,161 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parentheses gold,148 partially HLTOGAannotvGalGal6v1,165 particular augustusGene,234 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts HLTOGAannotvGalGal6v1,200 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 places mrna,407 refGene,279 xenoRefGene,246 please refGene,39 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,811 transMapEstV5,780 transMapRefSeqV5,780 transMapRnaV5,780 transMapV5,886 pmc HLTOGAannotvGalGal6v1,373 microsat,136 mrna,490 mrna,516 mrna,534 refGene,352 refGene,394 refGene,428 simpleRepeat,96 transMapEnsemblV5,755 transMapEnsemblV5,821 transMapEstV5,724 transMapEstV5,790 transMapRefSeqV5,724 transMapRefSeqV5,790 transMapRnaV5,724 transMapRnaV5,790 transMapV5,830 transMapV5,896 uniprot,2008 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc10193443 HLTOGAannotvGalGal6v1,374 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,535 refGene,353 xenoRefGene,319 pmc2099585 transMapEnsemblV5,756 transMapEstV5,725 transMapRefSeqV5,725 transMapRnaV5,725 transMapV5,831 pmc2134963 transMapEnsemblV5,822 transMapEstV5,791 transMapRefSeqV5,791 transMapRnaV5,791 transMapV5,897 pmc308779 mrna,517 pmc3245120 uniprot,2009 pmc3531190 mrna,491 pmc3965018 refGene,395 xenoRefGene,361 pmc539979 refGene,429 xenoRefGene,395 pmid HLTOGAannotvGalGal6v1,371 augustusGene,314 augustusGene,339 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 genscan,229 microsat,134 mrna,488 mrna,514 mrna,532 refGene,350 refGene,392 refGene,426 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,753 transMapEnsemblV5,785 transMapEnsemblV5,819 transMapEstV5,722 transMapEstV5,754 transMapEstV5,788 transMapRefSeqV5,722 transMapRefSeqV5,754 transMapRefSeqV5,788 transMapRnaV5,722 transMapRnaV5,754 transMapRnaV5,788 transMapV5,828 transMapV5,860 transMapV5,894 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position uniprot,610 positions HLTOGAannotvGalGal6v1,109 uniprot,1495 possible uniprot,601 possibly simpleRepeat,18 post-alignment transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 refGene,103 uniprot,48 uniprot,193 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 refGene,88 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,55 predictions HLTOGAannotvGalGal6v1,14 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 refGene,8 refGene,190 refGene,219 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared HLTOGAannotvGalGal6v1,318 gc5BaseBw,80 uniprot,712 present HLTOGAannotvGalGal6v1,152 HLTOGAannotvGalGal6v1,172 HLTOGAannotvGalGal6v1,219 HLTOGAannotvGalGal6v1,278 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous uniprot,1654 primary unipStruct,4 uniprot,360 principal gap,121 pringle transMapEnsemblV5,795 transMapEstV5,764 transMapRefSeqV5,764 transMapRnaV5,764 transMapV5,870 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 procedure uniprot,990 procedures gap,23 gold,25 process uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed HLTOGAannotvGalGal6v1,97 produced mrna,446 refGene,317 transMapEnsemblV5,22 transMapEnsemblV5,680 transMapEnsemblV5,704 transMapEstV5,20 transMapEstV5,649 transMapEstV5,673 transMapRefSeqV5,20 transMapRefSeqV5,649 transMapRefSeqV5,673 transMapRnaV5,20 transMapRnaV5,649 transMapRnaV5,673 transMapV5,19 transMapV5,142 transMapV5,755 transMapV5,779 xenoRefGene,284 products unipChain,5 program augustusGene,21 augustusGene,257 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,315 transMapEstV5,284 transMapRefSeqV5,284 transMapRnaV5,284 transMapV5,390 uniprot,1529 programs uniprot,1877 project refGene,334 xenoRefGene,301 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,322 transMapEstV5,291 transMapRefSeqV5,291 transMapRnaV5,291 transMapV5,397 projects transMapEnsemblV5,712 transMapEstV5,681 transMapRefSeqV5,681 transMapRnaV5,681 transMapV5,787 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 prot.bed uniprot,1931 uniprot,1933 protein HLTOGAannotvGalGal6v1,270 HLTOGAannotvGalGal6v1,293 HLTOGAannotvGalGal6v1,308 HLTOGAannotvGalGal6v1,311 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refGene,18 refGene,232 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins HLTOGAannotvGalGal6v1,163 HLTOGAannotvGalGal6v1,193 refGene,415 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 provide uniprot,1860 provided uniprot,817 provides HLTOGAannotvGalGal6v1,298 gap,33 gold,35 uniprot,489 providing augustusGene,254 genscan,175 rmsk,335 provisional refGene,105 xenoRefGene,72 pruitt refGene,354 refGene,396 xenoRefGene,320 xenoRefGene,362 pseudogenes HLTOGAannotvGalGal6v1,98 uniprot,1184 psl mrna,38 transMapEnsemblV5,103 transMapEstV5,72 transMapRefSeqV5,72 transMapRnaV5,72 transMapV5,178 uniprot,1479 pslcdnafilter transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 pslmap transMapEnsemblV5,314 transMapEstV5,283 transMapRefSeqV5,283 transMapRnaV5,283 transMapV5,389 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 mrna,457 transMapEnsemblV5,696 transMapEstV5,665 transMapRefSeqV5,665 transMapRnaV5,665 transMapV5,771 uniprot,709 publications uniprot,38 pull-down refGene,206 xenoRefGene,173 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 quality mrna,56 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 query HLTOGAannotvGalGal6v1,70 HLTOGAannotvGalGal6v1,126 HLTOGAannotvGalGal6v1,175 HLTOGAannotvGalGal6v1,222 rmsk,47 rmsk,61 uniprot,1484 questions uniprot,1834 quickly mrna,341 refGene,185 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,152 quite simpleRepeat,45 quot gc5BaseBw,58 gc5BaseBw,62 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 rmsk,350 transMapEnsemblV5,762 transMapEstV5,731 transMapRefSeqV5,731 transMapRnaV5,731 transMapV5,837 windowmaskerSdust,99 random augustusGene,119 raney uniprot,1960 range gap,135 transMapEnsemblV5,658 transMapEstV5,627 transMapRefSeqV5,627 transMapRnaV5,627 transMapV5,733 uniprot,1809 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw transMapEnsemblV5,521 transMapEstV5,490 transMapRefSeqV5,490 transMapRnaV5,490 transMapV5,596 uniprot,1708 rc rmsk,200 read gap,95 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 reciprocal transMapEnsemblV5,241 transMapEstV5,210 transMapRefSeqV5,210 transMapRnaV5,210 transMapV5,66 transMapV5,316 record refGene,100 uniprot,496 xenoRefGene,67 records refGene,63 refer genscan,144 uniprot,1827 reference HLTOGAannotvGalGal6v1,10 HLTOGAannotvGalGal6v1,51 HLTOGAannotvGalGal6v1,68 HLTOGAannotvGalGal6v1,117 refGene,27 refGene,46 refGene,381 refGene,403 uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references HLTOGAannotvGalGal6v1,324 augustusGene,285 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 genscan,152 genscan,179 microsat,113 mrna,463 refGene,335 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,713 transMapEstV5,682 transMapRefSeqV5,682 transMapRnaV5,682 transMapV5,788 uniprot,1984 windowmaskerSdust,89 xenoRefGene,302 refgene transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,2 transMapRefSeqV5,564 transMapRnaV5,564 transMapV5,670 reflects rmsk,213 refseq refGene,1 refGene,3 refGene,11 refGene,30 refGene,48 refGene,62 refGene,99 refGene,251 refGene,333 refGene,376 refGene,405 transMapEnsemblV5,170 transMapEnsemblV5,707 transMapEstV5,139 transMapEstV5,676 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,139 transMapRefSeqV5,676 transMapRnaV5,139 transMapRnaV5,676 transMapV5,245 transMapV5,782 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 regeneron uniprot,1968 region cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 uniprot,312 regions HLTOGAannotvGalGal6v1,85 augustusGene,76 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 simpleRepeat,39 transMapEnsemblV5,303 transMapEnsemblV5,604 transMapEstV5,272 transMapEstV5,573 transMapRefSeqV5,272 transMapRefSeqV5,573 transMapRnaV5,272 transMapRnaV5,573 transMapV5,378 transMapV5,679 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,75 uniprot,551 relative gap,79 gold,110 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,106 uniprot,681 relies HLTOGAannotvGalGal6v1,78 remain uniprot,1189 removed cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,308 transMapEstV5,277 transMapRefSeqV5,277 transMapRnaV5,277 transMapV5,383 reorganizing uniprot,1987 repbase rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive rmsk,374 uniprot,1400 represented gap,70 rmsk,49 representing gap,113 reproducibility uniprot,1645 res microsat,127 mrna,481 mrna,506 mrna,526 refGene,344 refGene,385 refGene,418 simpleRepeat,87 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 uniprot,1999 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 result cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 transMapEnsemblV5,507 transMapEstV5,476 transMapRefSeqV5,476 transMapRnaV5,476 transMapV5,582 uniprot,798 uniprot,1065 uniprot,1170 resulting transMapEnsemblV5,81 transMapEnsemblV5,337 transMapEnsemblV5,349 transMapEnsemblV5,494 transMapEstV5,50 transMapEstV5,306 transMapEstV5,318 transMapEstV5,463 transMapRefSeqV5,50 transMapRefSeqV5,306 transMapRefSeqV5,318 transMapRefSeqV5,463 transMapRnaV5,50 transMapRnaV5,306 transMapRnaV5,318 transMapRnaV5,463 transMapV5,51 transMapV5,412 transMapV5,424 transMapV5,569 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review refGene,97 xenoRefGene,64 reviewed refGene,107 xenoRefGene,74 riestra uniprot,1972 rna refGene,26 refGene,275 refGene,321 rmsk,186 rmsk,189 transMapEnsemblV5,598 transMapEstV5,567 transMapRefSeqV5,567 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,567 transMapV5,673 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas refGene,252 xenoRefGene,219 robert rmsk,330 role uniprot,309 rolling rmsk,201 rrna rmsk,191 run windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 rmsk,18 rmsk,293 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,789 transMapEstV5,758 transMapRefSeqV5,758 transMapRnaV5,758 transMapV5,864 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,476 scaffold gold,81 gold,119 scaffolds gap,130 scale HLTOGAannotvGalGal6v1,363 sch windowmaskerSdust,94 scheib uniprot,2012 science HLTOGAannotvGalGal6v1,364 genscan,203 scientific uniprot,37 scientists mrna,461 refGene,326 transMapEnsemblV5,700 transMapEstV5,669 transMapRefSeqV5,669 transMapRnaV5,669 transMapV5,775 xenoRefGene,293 score uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 screens rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,801 transMapEstV5,770 transMapRefSeqV5,770 transMapRnaV5,770 transMapV5,876 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 rmsk,103 uniprot,897 see augustusGene,42 genscan,57 microsat,101 refGene,72 refGene,242 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,231 transMapEnsemblV5,574 transMapEstV5,200 transMapEstV5,543 transMapRefSeqV5,200 transMapRefSeqV5,543 transMapRnaV5,200 transMapRnaV5,543 transMapV5,306 transMapV5,649 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refGene,195 xenoRefGene,162 selected mrna,242 mrna,258 mrna,311 transMapEnsemblV5,214 transMapEnsemblV5,251 transMapEnsemblV5,262 transMapEnsemblV5,330 transMapEstV5,183 transMapEstV5,220 transMapEstV5,231 transMapEstV5,299 transMapRefSeqV5,183 transMapRefSeqV5,220 transMapRefSeqV5,231 transMapRefSeqV5,299 transMapRnaV5,183 transMapRnaV5,220 transMapRnaV5,231 transMapRnaV5,299 transMapV5,289 transMapV5,326 transMapV5,337 transMapV5,405 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,148 sep rmsk,379 separated mrna,213 seq unipConflict,1 sequence HLTOGAannotvGalGal6v1,150 HLTOGAannotvGalGal6v1,309 augustusGene,32 augustusGene,70 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,55 gold,54 gold,151 gold,157 mrna,347 mrna,438 mrna,451 mrna,458 refGene,310 refGene,322 refGene,404 refGene,409 rmsk,48 rmsk,62 transMapEnsemblV5,129 transMapEnsemblV5,690 transMapEnsemblV5,697 transMapEstV5,98 transMapEstV5,659 transMapEstV5,666 transMapRefSeqV5,98 transMapRefSeqV5,659 transMapRefSeqV5,666 transMapRnaV5,98 transMapRnaV5,659 transMapRnaV5,666 transMapV5,204 transMapV5,765 transMapV5,772 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 refGene,28 refGene,47 refGene,382 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,32 xenoRefGene,348 sequencing cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 server transMapEnsemblV5,561 transMapEstV5,530 transMapRefSeqV5,530 transMapRnaV5,530 transMapV5,636 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 set transMapEnsemblV5,281 transMapEstV5,250 transMapRefSeqV5,250 transMapRnaV5,250 transMapV5,356 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 several HLTOGAannotvGalGal6v1,274 mrna,365 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 shaded mrna,51 shading refGene,92 rmsk,208 rmsk,239 xenoRefGene,59 sharma HLTOGAannotvGalGal6v1,342 short rmsk,153 uniprot,460 uniprot,978 should mrna,278 show refGene,158 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown HLTOGAannotvGalGal6v1,136 gold,102 microsat,48 mrna,96 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 gap,10 gc5BaseBw,16 genscan,13 gold,11 mrna,16 refGene,14 uniprot,14 uniprot,484 xenoRefGene,14 side gap,88 siepel transMapEnsemblV5,714 transMapEstV5,683 transMapRefSeqV5,683 transMapRnaV5,683 transMapV5,789 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 since uniprot,1383 sine rmsk,157 single mrna,402 refGene,274 transMapEnsemblV5,480 transMapEstV5,449 transMapRefSeqV5,449 transMapRnaV5,449 transMapV5,555 uniprot,141 xenoRefGene,241 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,134 sm refGene,359 xenoRefGene,325 smit rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so uniprot,1135 uniprot,1430 soft-masked rmsk,305 software HLTOGAannotvGalGal6v1,327 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,104 rmsk,105 rmsk,268 transMapEnsemblV5,299 transMapEnsemblV5,309 transMapEstV5,268 transMapEstV5,278 transMapRefSeqV5,268 transMapRefSeqV5,278 transMapRnaV5,268 transMapRnaV5,278 transMapV5,374 transMapV5,384 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 transMapEnsemblV5,153 transMapEnsemblV5,325 transMapEnsemblV5,343 transMapEnsemblV5,407 transMapEnsemblV5,432 transMapEnsemblV5,623 transMapEnsemblV5,637 transMapEstV5,122 transMapEstV5,294 transMapEstV5,312 transMapEstV5,376 transMapEstV5,401 transMapEstV5,592 transMapEstV5,606 transMapRefSeqV5,122 transMapRefSeqV5,294 transMapRefSeqV5,312 transMapRefSeqV5,376 transMapRefSeqV5,401 transMapRefSeqV5,592 transMapRefSeqV5,606 transMapRnaV5,122 transMapRnaV5,294 transMapRnaV5,312 transMapRnaV5,376 transMapRnaV5,401 transMapRnaV5,592 transMapRnaV5,606 transMapV5,228 transMapV5,400 transMapV5,418 transMapV5,482 transMapV5,507 transMapV5,698 transMapV5,712 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space mrna,216 uniprot,1990 spaces gold,100 specialized simpleRepeat,29 species HLTOGAannotvGalGal6v1,52 HLTOGAannotvGalGal6v1,127 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 transMapEnsemblV5,32 transMapEnsemblV5,271 transMapEstV5,30 transMapEstV5,240 transMapRefSeqV5,30 transMapRefSeqV5,240 transMapRnaV5,30 transMapRnaV5,240 transMapV5,29 transMapV5,79 transMapV5,115 transMapV5,346 species-specific augustusGene,156 specific gap,34 gold,36 mrna,143 simpleRepeat,53 specification gap,60 gold,59 splice augustusGene,53 genscan,156 uniprot,144 spliced transMapEnsemblV5,176 transMapEstV5,17 transMapEstV5,145 transMapRefSeqV5,145 transMapRnaV5,145 transMapV5,251 splicing augustusGene,123 genscan,33 genscan,186 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,424 transMapEstV5,393 transMapRefSeqV5,393 transMapRnaV5,393 transMapV5,499 srprna rmsk,194 staff uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,757 transMapEstV5,726 transMapRefSeqV5,726 transMapRnaV5,726 transMapV5,832 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,125 uniprot,209 uniprot,1821 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 transMapEnsemblV5,675 transMapEstV5,644 transMapRefSeqV5,644 transMapRnaV5,644 transMapV5,750 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,307 transMapEstV5,276 transMapRefSeqV5,276 transMapRnaV5,276 transMapV5,382 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 stored transMapEnsemblV5,544 transMapEstV5,513 transMapRefSeqV5,513 transMapRnaV5,513 transMapV5,619 uniprot,1733 strand cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,120 strong HLTOGAannotvGalGal6v1,253 HLTOGAannotvGalGal6v1,282 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 subcellular uniprot,553 submit refGene,53 submitted mrna,453 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 submodel augustusGene,331 subsequent transMapEnsemblV5,442 transMapEstV5,411 transMapRefSeqV5,411 transMapRnaV5,411 transMapV5,517 subset microsat,54 mrna,82 transMapEnsemblV5,208 transMapEstV5,177 transMapRefSeqV5,177 transMapRnaV5,177 transMapV5,283 subtrack uniprot,411 subtracks uniprot,59 uniprot,72 uniprot,520 uniprot,548 such cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 uniprot,306 suffix transMapEnsemblV5,401 transMapEstV5,370 transMapRefSeqV5,370 transMapRnaV5,370 transMapV5,476 uniprot,1255 suggestions refGene,52 suitable uniprot,1868 suppl augustusGene,336 supported gap,93 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 syn transMapEnsemblV5,255 transMapEstV5,224 transMapRefSeqV5,224 transMapRnaV5,224 transMapV5,330 syntenic transMapEnsemblV5,237 transMapEnsemblV5,517 transMapEstV5,206 transMapEstV5,486 transMapRefSeqV5,206 transMapRefSeqV5,486 transMapRnaV5,206 transMapRnaV5,486 transMapV5,312 transMapV5,592 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,768 transMapEstV5,45 transMapEstV5,737 transMapRefSeqV5,45 transMapRefSeqV5,737 transMapRnaV5,45 transMapRnaV5,737 transMapV5,44 transMapV5,843 synteny transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 synteny-filtered transMapV5,83 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1353 uniprot,1784 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 refGene,399 xenoRefGene,365 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 mrna,168 mrna,171 mrna,190 transMapEnsemblV5,532 transMapEstV5,501 transMapRefSeqV5,501 transMapRnaV5,501 transMapV5,607 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 uniprot,1301 taken refGene,22 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 targeted transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 task mrna,110 tatusova refGene,398 xenoRefGene,364 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,117 terminal rmsk,167 terms mrna,161 mrna,207 text mrna,124 mrna,164 mrna,204 uniprot,1763 th transMapEnsemblV5,796 transMapEstV5,765 transMapRefSeqV5,765 transMapRnaV5,765 transMapV5,871 than cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,229 refGene,268 transMapEnsemblV5,225 transMapEnsemblV5,376 transMapEstV5,194 transMapEstV5,345 transMapRefSeqV5,194 transMapRefSeqV5,345 transMapRnaV5,194 transMapRnaV5,345 transMapV5,108 transMapV5,149 transMapV5,300 transMapV5,451 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 genscan,170 rmsk,326 uniprot,1974 that HLTOGAannotvGalGal6v1,28 HLTOGAannotvGalGal6v1,77 HLTOGAannotvGalGal6v1,284 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,75 gold,145 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 refGene,181 rmsk,42 rmsk,259 transMapEnsemblV5,118 transMapEnsemblV5,194 transMapEnsemblV5,500 transMapEstV5,87 transMapEstV5,163 transMapEstV5,469 transMapRefSeqV5,87 transMapRefSeqV5,163 transMapRefSeqV5,469 transMapRnaV5,87 transMapRnaV5,163 transMapRnaV5,469 transMapV5,193 transMapV5,269 transMapV5,575 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,148 the HLTOGAannotvGalGal6v1,67 HLTOGAannotvGalGal6v1,108 HLTOGAannotvGalGal6v1,120 HLTOGAannotvGalGal6v1,125 HLTOGAannotvGalGal6v1,147 HLTOGAannotvGalGal6v1,169 HLTOGAannotvGalGal6v1,174 HLTOGAannotvGalGal6v1,177 HLTOGAannotvGalGal6v1,181 HLTOGAannotvGalGal6v1,195 HLTOGAannotvGalGal6v1,202 HLTOGAannotvGalGal6v1,216 HLTOGAannotvGalGal6v1,221 HLTOGAannotvGalGal6v1,224 HLTOGAannotvGalGal6v1,228 HLTOGAannotvGalGal6v1,243 HLTOGAannotvGalGal6v1,247 HLTOGAannotvGalGal6v1,257 HLTOGAannotvGalGal6v1,285 HLTOGAannotvGalGal6v1,302 HLTOGAannotvGalGal6v1,307 HLTOGAannotvGalGal6v1,320 HLTOGAannotvGalGal6v1,325 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 gap,11 gap,14 gap,27 gap,39 gap,42 gap,49 gap,54 gap,56 gap,62 gap,65 gap,78 gap,84 gap,90 gap,110 gap,114 gap,119 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,29 gold,41 gold,48 gold,53 gold,55 gold,61 gold,64 gold,73 gold,78 gold,87 gold,104 gold,109 gold,115 gold,129 gold,134 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 refGene,10 refGene,24 refGene,31 refGene,41 refGene,68 refGene,83 refGene,90 refGene,94 refGene,98 refGene,109 refGene,124 refGene,127 refGene,130 refGene,144 refGene,150 refGene,155 refGene,160 refGene,168 refGene,196 refGene,201 refGene,216 refGene,231 refGene,244 refGene,256 refGene,280 refGene,283 refGene,299 refGene,308 refGene,331 refGene,339 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,99 transMapEnsemblV5,120 transMapEnsemblV5,127 transMapEnsemblV5,162 transMapEnsemblV5,179 transMapEnsemblV5,202 transMapEnsemblV5,210 transMapEnsemblV5,253 transMapEnsemblV5,257 transMapEnsemblV5,261 transMapEnsemblV5,273 transMapEnsemblV5,279 transMapEnsemblV5,296 transMapEnsemblV5,304 transMapEnsemblV5,311 transMapEnsemblV5,313 transMapEnsemblV5,324 transMapEnsemblV5,329 transMapEnsemblV5,333 transMapEnsemblV5,342 transMapEnsemblV5,346 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,406 transMapEnsemblV5,416 transMapEnsemblV5,419 transMapEnsemblV5,441 transMapEnsemblV5,450 transMapEnsemblV5,463 transMapEnsemblV5,473 transMapEnsemblV5,485 transMapEnsemblV5,506 transMapEnsemblV5,520 transMapEnsemblV5,531 transMapEnsemblV5,535 transMapEnsemblV5,541 transMapEnsemblV5,580 transMapEnsemblV5,588 transMapEnsemblV5,606 transMapEnsemblV5,622 transMapEnsemblV5,645 transMapEnsemblV5,694 transMapEnsemblV5,706 transMapEnsemblV5,808 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,68 transMapEstV5,89 transMapEstV5,96 transMapEstV5,131 transMapEstV5,148 transMapEstV5,171 transMapEstV5,179 transMapEstV5,222 transMapEstV5,226 transMapEstV5,230 transMapEstV5,242 transMapEstV5,248 transMapEstV5,265 transMapEstV5,273 transMapEstV5,280 transMapEstV5,282 transMapEstV5,293 transMapEstV5,298 transMapEstV5,302 transMapEstV5,311 transMapEstV5,315 transMapEstV5,317 transMapEstV5,348 transMapEstV5,375 transMapEstV5,385 transMapEstV5,388 transMapEstV5,410 transMapEstV5,419 transMapEstV5,432 transMapEstV5,442 transMapEstV5,454 transMapEstV5,475 transMapEstV5,489 transMapEstV5,500 transMapEstV5,504 transMapEstV5,510 transMapEstV5,549 transMapEstV5,557 transMapEstV5,575 transMapEstV5,591 transMapEstV5,614 transMapEstV5,663 transMapEstV5,675 transMapEstV5,777 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,68 transMapRefSeqV5,89 transMapRefSeqV5,96 transMapRefSeqV5,131 transMapRefSeqV5,148 transMapRefSeqV5,171 transMapRefSeqV5,179 transMapRefSeqV5,222 transMapRefSeqV5,226 transMapRefSeqV5,230 transMapRefSeqV5,242 transMapRefSeqV5,248 transMapRefSeqV5,265 transMapRefSeqV5,273 transMapRefSeqV5,280 transMapRefSeqV5,282 transMapRefSeqV5,293 transMapRefSeqV5,298 transMapRefSeqV5,302 transMapRefSeqV5,311 transMapRefSeqV5,315 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,375 transMapRefSeqV5,385 transMapRefSeqV5,388 transMapRefSeqV5,410 transMapRefSeqV5,419 transMapRefSeqV5,432 transMapRefSeqV5,442 transMapRefSeqV5,454 transMapRefSeqV5,475 transMapRefSeqV5,489 transMapRefSeqV5,500 transMapRefSeqV5,504 transMapRefSeqV5,510 transMapRefSeqV5,549 transMapRefSeqV5,557 transMapRefSeqV5,575 transMapRefSeqV5,591 transMapRefSeqV5,614 transMapRefSeqV5,663 transMapRefSeqV5,675 transMapRefSeqV5,777 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,68 transMapRnaV5,89 transMapRnaV5,96 transMapRnaV5,131 transMapRnaV5,148 transMapRnaV5,171 transMapRnaV5,179 transMapRnaV5,222 transMapRnaV5,226 transMapRnaV5,230 transMapRnaV5,242 transMapRnaV5,248 transMapRnaV5,265 transMapRnaV5,273 transMapRnaV5,280 transMapRnaV5,282 transMapRnaV5,293 transMapRnaV5,298 transMapRnaV5,302 transMapRnaV5,311 transMapRnaV5,315 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,375 transMapRnaV5,385 transMapRnaV5,388 transMapRnaV5,410 transMapRnaV5,419 transMapRnaV5,432 transMapRnaV5,442 transMapRnaV5,454 transMapRnaV5,475 transMapRnaV5,489 transMapRnaV5,500 transMapRnaV5,504 transMapRnaV5,510 transMapRnaV5,549 transMapRnaV5,557 transMapRnaV5,575 transMapRnaV5,591 transMapRnaV5,614 transMapRnaV5,663 transMapRnaV5,675 transMapRnaV5,777 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,92 transMapV5,99 transMapV5,104 transMapV5,122 transMapV5,127 transMapV5,133 transMapV5,137 transMapV5,174 transMapV5,195 transMapV5,202 transMapV5,237 transMapV5,254 transMapV5,277 transMapV5,285 transMapV5,328 transMapV5,332 transMapV5,336 transMapV5,348 transMapV5,354 transMapV5,371 transMapV5,379 transMapV5,386 transMapV5,388 transMapV5,399 transMapV5,404 transMapV5,408 transMapV5,417 transMapV5,421 transMapV5,423 transMapV5,454 transMapV5,481 transMapV5,491 transMapV5,494 transMapV5,516 transMapV5,525 transMapV5,538 transMapV5,548 transMapV5,560 transMapV5,581 transMapV5,595 transMapV5,606 transMapV5,610 transMapV5,616 transMapV5,655 transMapV5,663 transMapV5,681 transMapV5,697 transMapV5,720 transMapV5,769 transMapV5,781 transMapV5,883 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their uniprot,62 uniprot,723 uniprot,1101 them cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 transMapV5,130 uniprot,1083 uniprot,1516 there HLTOGAannotvGalGal6v1,237 HLTOGAannotvGalGal6v1,280 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 transMapEnsemblV5,453 transMapEstV5,422 transMapRefSeqV5,422 transMapRnaV5,422 transMapV5,528 uniprot,705 uniprot,1092 therefore gold,123 uniprot,968 uniprot,1145 these HLTOGAannotvGalGal6v1,158 HLTOGAannotvGalGal6v1,187 HLTOGAannotvGalGal6v1,261 augustusGene,95 augustusGene,190 microsat,24 rmsk,235 simpleRepeat,33 transMapEnsemblV5,460 transMapEnsemblV5,469 transMapEnsemblV5,524 transMapEnsemblV5,585 transMapEstV5,429 transMapEstV5,438 transMapEstV5,493 transMapEstV5,554 transMapRefSeqV5,429 transMapRefSeqV5,438 transMapRefSeqV5,493 transMapRefSeqV5,554 transMapRnaV5,429 transMapRnaV5,438 transMapRnaV5,493 transMapRnaV5,554 transMapV5,12 transMapV5,535 transMapV5,544 transMapV5,599 transMapV5,660 uniprot,99 uniprot,130 uniprot,1160 they uniprot,179 thibaud-nissen refGene,360 xenoRefGene,326 this HLTOGAannotvGalGal6v1,315 augustusGene,13 augustusGene,106 augustusGene,224 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 gap,8 gap,37 gap,45 gap,75 gap,116 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,39 gold,44 gold,70 gold,140 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 refGene,34 refGene,80 refGene,118 refGene,173 refGene,212 refGene,248 refGene,314 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,134 transMapEnsemblV5,288 transMapEnsemblV5,677 transMapEstV5,13 transMapEstV5,65 transMapEstV5,75 transMapEstV5,103 transMapEstV5,257 transMapEstV5,646 transMapRefSeqV5,14 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,103 transMapRefSeqV5,257 transMapRefSeqV5,646 transMapRnaV5,14 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,103 transMapRnaV5,257 transMapRnaV5,646 transMapV5,171 transMapV5,181 transMapV5,209 transMapV5,363 transMapV5,752 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those microsat,62 mrna,317 refGene,262 uniprot,729 xenoRefGene,229 three uniprot,1227 three-step uniprot,989 through gap,109 refGene,123 rmsk,309 transMapEnsemblV5,530 transMapEstV5,499 transMapRefSeqV5,499 transMapRnaV5,499 transMapV5,605 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 thus HLTOGAannotvGalGal6v1,279 time cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 tissue mrna,153 mrna,188 mrna,203 tissues mrna,196 to HLTOGAannotvGalGal6v1,18 HLTOGAannotvGalGal6v1,90 HLTOGAannotvGalGal6v1,99 HLTOGAannotvGalGal6v1,106 HLTOGAannotvGalGal6v1,208 HLTOGAannotvGalGal6v1,255 HLTOGAannotvGalGal6v1,289 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,132 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 refGene,50 refGene,148 refGene,184 refGene,191 refGene,215 refGene,241 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,112 transMapEnsemblV5,122 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,260 transMapEnsemblV5,293 transMapEnsemblV5,301 transMapEnsemblV5,318 transMapEnsemblV5,332 transMapEnsemblV5,345 transMapEnsemblV5,384 transMapEnsemblV5,429 transMapEnsemblV5,439 transMapEnsemblV5,472 transMapEnsemblV5,478 transMapEnsemblV5,491 transMapEnsemblV5,651 transMapEnsemblV5,693 transMapEnsemblV5,772 transMapEstV5,81 transMapEstV5,91 transMapEstV5,147 transMapEstV5,170 transMapEstV5,229 transMapEstV5,262 transMapEstV5,270 transMapEstV5,287 transMapEstV5,301 transMapEstV5,314 transMapEstV5,353 transMapEstV5,398 transMapEstV5,408 transMapEstV5,441 transMapEstV5,447 transMapEstV5,460 transMapEstV5,620 transMapEstV5,662 transMapEstV5,741 transMapRefSeqV5,81 transMapRefSeqV5,91 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,229 transMapRefSeqV5,262 transMapRefSeqV5,270 transMapRefSeqV5,287 transMapRefSeqV5,301 transMapRefSeqV5,314 transMapRefSeqV5,353 transMapRefSeqV5,398 transMapRefSeqV5,408 transMapRefSeqV5,441 transMapRefSeqV5,447 transMapRefSeqV5,460 transMapRefSeqV5,620 transMapRefSeqV5,662 transMapRefSeqV5,741 transMapRnaV5,81 transMapRnaV5,91 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,229 transMapRnaV5,262 transMapRnaV5,270 transMapRnaV5,287 transMapRnaV5,301 transMapRnaV5,314 transMapRnaV5,353 transMapRnaV5,398 transMapRnaV5,408 transMapRnaV5,441 transMapRnaV5,447 transMapRnaV5,460 transMapRnaV5,620 transMapRnaV5,662 transMapRnaV5,741 transMapV5,80 transMapV5,90 transMapV5,121 transMapV5,132 transMapV5,155 transMapV5,187 transMapV5,197 transMapV5,253 transMapV5,276 transMapV5,335 transMapV5,368 transMapV5,376 transMapV5,393 transMapV5,407 transMapV5,420 transMapV5,459 transMapV5,504 transMapV5,514 transMapV5,547 transMapV5,553 transMapV5,566 transMapV5,726 transMapV5,768 transMapV5,847 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 toga HLTOGAannotvGalGal6v1,1 HLTOGAannotvGalGal6v1,4 HLTOGAannotvGalGal6v1,16 HLTOGAannotvGalGal6v1,44 HLTOGAannotvGalGal6v1,72 HLTOGAannotvGalGal6v1,326 HLTOGAannotvGalGal6v1,333 tolerated uniprot,1257 tool HLTOGAannotvGalGal6v1,17 mrna,524 refGene,342 transMapEnsemblV5,615 transMapEnsemblV5,646 transMapEstV5,584 transMapEstV5,615 transMapRefSeqV5,584 transMapRefSeqV5,615 transMapRnaV5,584 transMapRnaV5,615 transMapV5,690 transMapV5,721 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools rmsk,337 uniprot,1873 top cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 refGene,128 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 gap,9 gap,76 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,71 gold,141 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 refGene,13 refGene,35 refGene,81 refGene,119 refGene,131 refGene,174 refGene,203 refGene,315 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,97 transMapEnsemblV5,107 transMapEnsemblV5,233 transMapEnsemblV5,572 transMapEnsemblV5,576 transMapEnsemblV5,678 transMapEstV5,14 transMapEstV5,66 transMapEstV5,76 transMapEstV5,202 transMapEstV5,541 transMapEstV5,545 transMapEstV5,647 transMapRefSeqV5,15 transMapRefSeqV5,66 transMapRefSeqV5,76 transMapRefSeqV5,202 transMapRefSeqV5,541 transMapRefSeqV5,545 transMapRefSeqV5,647 transMapRnaV5,15 transMapRnaV5,66 transMapRnaV5,76 transMapRnaV5,202 transMapRnaV5,541 transMapRnaV5,545 transMapRnaV5,647 transMapV5,102 transMapV5,172 transMapV5,182 transMapV5,308 transMapV5,647 transMapV5,651 transMapV5,753 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 genscan,56 genscan,74 mrna,40 mrna,363 refGene,71 refGene,89 transMapEnsemblV5,105 transMapEnsemblV5,525 transMapEnsemblV5,586 transMapEstV5,74 transMapEstV5,494 transMapEstV5,555 transMapRefSeqV5,74 transMapRefSeqV5,494 transMapRefSeqV5,555 transMapRnaV5,74 transMapRnaV5,494 transMapRnaV5,555 transMapV5,13 transMapV5,180 transMapV5,600 transMapV5,661 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,56 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcript HLTOGAannotvGalGal6v1,118 HLTOGAannotvGalGal6v1,134 HLTOGAannotvGalGal6v1,258 HLTOGAannotvGalGal6v1,286 HLTOGAannotvGalGal6v1,297 transMapEnsemblV5,154 transMapEnsemblV5,326 transMapEnsemblV5,380 transMapEstV5,123 transMapEstV5,295 transMapEstV5,349 transMapRefSeqV5,123 transMapRefSeqV5,295 transMapRefSeqV5,349 transMapRnaV5,123 transMapRnaV5,295 transMapRnaV5,349 transMapV5,229 transMapV5,401 transMapV5,455 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts HLTOGAannotvGalGal6v1,159 HLTOGAannotvGalGal6v1,188 HLTOGAannotvGalGal6v1,262 augustusGene,124 refGene,413 transMapEnsemblV5,344 transMapEstV5,313 transMapRefSeqV5,313 transMapRnaV5,313 transMapV5,419 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated transMapV5,156 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,443 transMapEnsemblV5,502 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,600 transMapEnsemblV5,666 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,412 transMapEstV5,471 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,569 transMapEstV5,635 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,412 transMapRefSeqV5,471 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,569 transMapRefSeqV5,635 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,412 transMapRnaV5,471 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,569 transMapRnaV5,635 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,71 transMapV5,101 transMapV5,158 transMapV5,518 transMapV5,577 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,675 transMapV5,741 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable rmsk,402 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 refGene,166 xenoRefGene,133 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two transMapEnsemblV5,455 transMapEnsemblV5,492 transMapEstV5,424 transMapEstV5,461 transMapRefSeqV5,424 transMapRefSeqV5,461 transMapRnaV5,424 transMapRnaV5,461 transMapV5,530 transMapV5,567 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,146 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 gap,122 gold,137 mrna,194 mrna,366 transMapEnsemblV5,139 transMapEstV5,108 transMapRefSeqV5,108 transMapRnaV5,108 transMapV5,214 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically HLTOGAannotvGalGal6v1,273 cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 ucsc mrna,448 refGene,319 transMapEnsemblV5,35 transMapEnsemblV5,163 transMapEnsemblV5,184 transMapEnsemblV5,685 transMapEstV5,33 transMapEstV5,132 transMapEstV5,153 transMapEstV5,654 transMapRefSeqV5,33 transMapRefSeqV5,132 transMapRefSeqV5,153 transMapRefSeqV5,654 transMapRnaV5,33 transMapRnaV5,132 transMapRnaV5,153 transMapRnaV5,654 transMapV5,32 transMapV5,238 transMapV5,259 transMapV5,760 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,286 uncertain HLTOGAannotvGalGal6v1,235 undergone refGene,102 xenoRefGene,69 underlies genscan,142 underlying refGene,33 uniprot,1682 xenoRefGene,37 unexpected uniprot,766 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,386 transMapEnsemblV5,397 transMapEnsemblV5,434 transMapEnsemblV5,445 transMapEstV5,355 transMapEstV5,366 transMapEstV5,403 transMapEstV5,414 transMapRefSeqV5,355 transMapRefSeqV5,366 transMapRefSeqV5,403 transMapRefSeqV5,414 transMapRnaV5,355 transMapRnaV5,366 transMapRnaV5,403 transMapRnaV5,414 transMapV5,461 transMapV5,472 transMapV5,509 transMapV5,520 uniprot,1600 universal uniprot,1993 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 unlikely HLTOGAannotvGalGal6v1,288 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsure rmsk,263 up gold,77 rmsk,146 update mrna,503 refGene,378 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,344 updated refGene,37 uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use gold,88 mrna,112 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used HLTOGAannotvGalGal6v1,105 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 genscan,159 gold,14 mrna,69 mrna,221 mrna,280 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,187 transMapEnsemblV5,240 transMapEnsemblV5,245 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,317 transMapEnsemblV5,650 transMapEstV5,156 transMapEstV5,209 transMapEstV5,214 transMapEstV5,234 transMapEstV5,254 transMapEstV5,286 transMapEstV5,619 transMapRefSeqV5,156 transMapRefSeqV5,209 transMapRefSeqV5,214 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,286 transMapRefSeqV5,619 transMapRnaV5,156 transMapRnaV5,209 transMapRnaV5,214 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,286 transMapRnaV5,619 transMapV5,70 transMapV5,262 transMapV5,315 transMapV5,320 transMapV5,340 transMapV5,360 transMapV5,392 transMapV5,725 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful microsat,20 user mrna,339 transMapEnsemblV5,121 transMapEstV5,90 transMapRefSeqV5,90 transMapRnaV5,90 transMapV5,196 users refGene,183 uniprot,406 uniprot,684 xenoRefGene,150 uses HLTOGAannotvGalGal6v1,45 HLTOGAannotvGalGal6v1,87 rmsk,79 using HLTOGAannotvGalGal6v1,6 augustusGene,294 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 microsat,90 mrna,396 refGene,260 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,564 transMapEnsemblV5,613 transMapEnsemblV5,765 transMapEstV5,44 transMapEstV5,533 transMapEstV5,582 transMapEstV5,734 transMapRefSeqV5,44 transMapRefSeqV5,533 transMapRefSeqV5,582 transMapRefSeqV5,734 transMapRnaV5,44 transMapRnaV5,533 transMapRnaV5,582 transMapRnaV5,734 transMapV5,43 transMapV5,82 transMapV5,125 transMapV5,136 transMapV5,143 transMapV5,639 transMapV5,688 transMapV5,840 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,227 ustat windowmaskerSdust,66 usually transMapEnsemblV5,505 transMapEstV5,474 transMapRefSeqV5,474 transMapRnaV5,474 transMapV5,580 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,165 v HLTOGAannotvGalGal6v1,343 v3.1 augustusGene,7 v4 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 v5 transMapV5,2 transMapV5,742 valid mrna,160 validate refGene,186 xenoRefGene,153 validation genscan,107 value mrna,231 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,159 transMapEnsemblV5,192 transMapEstV5,29 transMapEstV5,128 transMapEstV5,161 transMapRefSeqV5,29 transMapRefSeqV5,128 transMapRefSeqV5,161 transMapRnaV5,29 transMapRnaV5,128 transMapRnaV5,161 transMapV5,28 transMapV5,114 transMapV5,234 transMapV5,267 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,328 transMapEstV5,297 transMapRefSeqV5,297 transMapRnaV5,297 transMapV5,403 uniprot,1293 view cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,156 viewed gold,80 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refGene,40 vs HLTOGAannotvGalGal6v1,2 waack augustusGene,318 want uniprot,690 was HLTOGAannotvGalGal6v1,317 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,415 mrna,445 refGene,287 refGene,316 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,222 transMapEnsemblV5,239 transMapEnsemblV5,284 transMapEnsemblV5,316 transMapEnsemblV5,679 transMapEstV5,191 transMapEstV5,208 transMapEstV5,253 transMapEstV5,285 transMapEstV5,648 transMapRefSeqV5,191 transMapRefSeqV5,208 transMapRefSeqV5,253 transMapRefSeqV5,285 transMapRefSeqV5,648 transMapRnaV5,191 transMapRnaV5,208 transMapRnaV5,253 transMapRnaV5,285 transMapRnaV5,648 transMapV5,297 transMapV5,314 transMapV5,359 transMapV5,391 transMapV5,754 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,254 xenoRefGene,283 way transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 transMapV5,665 uniprot,1459 ways gc5BaseBw,47 we rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 weaker HLTOGAannotvGalGal6v1,198 weekly refGene,38 xenoRefGene,42 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 gc5BaseBw,79 mrna,391 mrna,439 refGene,253 refGene,270 refGene,311 transMapEnsemblV5,156 transMapEnsemblV5,186 transMapEnsemblV5,213 transMapEnsemblV5,244 transMapEnsemblV5,250 transMapEnsemblV5,264 transMapEnsemblV5,351 transMapEnsemblV5,382 transMapEnsemblV5,395 transMapEstV5,125 transMapEstV5,155 transMapEstV5,182 transMapEstV5,213 transMapEstV5,219 transMapEstV5,233 transMapEstV5,320 transMapEstV5,351 transMapEstV5,364 transMapRefSeqV5,125 transMapRefSeqV5,155 transMapRefSeqV5,182 transMapRefSeqV5,213 transMapRefSeqV5,219 transMapRefSeqV5,233 transMapRefSeqV5,320 transMapRefSeqV5,351 transMapRefSeqV5,364 transMapRnaV5,125 transMapRnaV5,155 transMapRnaV5,182 transMapRnaV5,213 transMapRnaV5,219 transMapRnaV5,233 transMapRnaV5,320 transMapRnaV5,351 transMapRnaV5,364 transMapV5,116 transMapV5,129 transMapV5,231 transMapV5,261 transMapV5,288 transMapV5,319 transMapV5,325 transMapV5,339 transMapV5,426 transMapV5,457 transMapV5,470 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler mrna,500 when augustusGene,188 augustusGene,238 mrna,92 mrna,102 mrna,400 refGene,272 transMapEnsemblV5,468 transMapEstV5,437 transMapRefSeqV5,437 transMapRnaV5,437 transMapV5,543 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,239 where cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,95 transMapEnsemblV5,272 transMapEnsemblV5,374 transMapEnsemblV5,423 transMapEnsemblV5,511 transMapEstV5,241 transMapEstV5,343 transMapEstV5,392 transMapEstV5,480 transMapRefSeqV5,241 transMapRefSeqV5,343 transMapRefSeqV5,392 transMapRefSeqV5,480 transMapRnaV5,241 transMapRnaV5,343 transMapRnaV5,392 transMapRnaV5,480 transMapV5,347 transMapV5,449 transMapV5,498 transMapV5,586 uniprot,1192 which augustusGene,159 augustusGene,227 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,179 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,145 transMapV5,692 uniprot,158 uniprot,1380 uniprot,1768 white gap,105 whole HLTOGAannotvGalGal6v1,63 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 transMapEnsemblV5,607 transMapEstV5,576 transMapRefSeqV5,576 transMapRnaV5,576 transMapV5,682 whose transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,217 will mrna,250 mrna,268 mrna,297 mrna,314 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,181 refGene,240 xenoRefGene,207 with HLTOGAannotvGalGal6v1,359 augustusGene,127 augustusGene,322 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,53 gc5BaseBw,35 gold,52 gold,142 microsat,69 microsat,76 mrna,435 refGene,263 refGene,307 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,183 transMapEnsemblV5,252 transMapEnsemblV5,353 transMapEnsemblV5,355 transMapEnsemblV5,584 transMapEstV5,152 transMapEstV5,221 transMapEstV5,322 transMapEstV5,324 transMapEstV5,553 transMapRefSeqV5,152 transMapRefSeqV5,221 transMapRefSeqV5,322 transMapRefSeqV5,324 transMapRefSeqV5,553 transMapRnaV5,152 transMapRnaV5,221 transMapRnaV5,322 transMapRnaV5,324 transMapRnaV5,553 transMapV5,258 transMapV5,327 transMapV5,428 transMapV5,430 transMapV5,659 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,230 xenoRefGene,274 within gold,117 mrna,85 mrna,424 refGene,117 refGene,296 simpleRepeat,37 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj mrna,519 refGene,337 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,462 refGene,327 transMapEnsemblV5,701 transMapEstV5,670 transMapRefSeqV5,670 transMapRnaV5,670 transMapV5,776 xenoRefGene,294 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org rmsk,356 x uniprot,1923 xml uniprot,1510 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you mrna,180 refGene,239 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,206 your transMapEnsemblV5,632 transMapEstV5,601 transMapRefSeqV5,601 transMapRnaV5,601 transMapV5,707 uniprot,1783 zebrafish augustusGene,202 augustusGene,278 zhu transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 zinc uniprot,326 zoomed-in genscan,103