0 nestedRepeats,237 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,425 xenoRefGene,264 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 1 augustusGene,310 chainMm10,391 chainMm10,522 chainMm10,714 chainMm10,1113 chainNetMm10,394 chainNetMm10,525 chainNetMm10,717 chainNetMm10,1116 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 genscan,227 mrna,509 netMm10,391 netMm10,522 netMm10,714 netMm10,1113 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoMrna,499 xenoMrna,583 xenoRefGene,387 10 uniprot,1928 100 augustusGene,134 chainMm10,1081 chainNetMm10,1084 microsat,70 nestedRepeats,230 netMm10,1081 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 nestedRepeats,238 1000-2000 augustusGene,161 1000000 uniprot,1824 103-7 chainMm10,1114 chainNetMm10,1117 netMm10,1114 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainMm10,710 chainMm10,717 chainNetMm10,713 chainNetMm10,720 netMm10,710 netMm10,717 1100 chainMm10,731 chainMm10,743 chainNetMm10,734 chainNetMm10,746 netMm10,731 netMm10,743 111 chainMm10,712 chainMm10,718 chainNetMm10,715 chainNetMm10,721 netMm10,712 netMm10,718 11484-9 chainMm10,1083 chainNetMm10,1086 netMm10,1083 115-26 chainMm10,1045 chainNetMm10,1048 netMm10,1045 11928468 chainMm10,1047 chainNetMm10,1050 netMm10,1047 11932250 mrna,533 xenoMrna,607 xenoRefGene,317 12 mrna,529 xenoMrna,603 xenoRefGene,313 12111 chainMm10,720 chainNetMm10,723 netMm10,720 12529312 chainMm10,1116 chainNetMm10,1119 netMm10,1116 127-163 genscan,206 13 chainMm10,1112 chainNetMm10,1115 netMm10,1112 134-41 windowmaskerSdust,112 1400 chainMm10,755 chainNetMm10,758 netMm10,755 14500911 chainMm10,1085 chainNetMm10,1088 netMm10,1085 14534192 augustusGene,340 14681350 mrna,515 xenoMrna,589 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,236 15108278 uniprot,2051 152111 chainMm10,723 chainNetMm10,726 netMm10,723 15600 chainMm10,734 chainMm10,746 chainNetMm10,737 chainNetMm10,749 netMm10,734 netMm10,746 15608248 xenoRefGene,393 16 nestedRepeats,357 rmsk,380 16000 chainMm10,758 chainNetMm10,761 netMm10,758 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 18218656 augustusGene,315 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainMm10,425 chainMm10,430 chainMm10,715 chainNetMm10,428 chainNetMm10,433 chainNetMm10,718 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netMm10,425 netMm10,430 netMm10,715 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 20 chainMm10,1082 chainNetMm10,1085 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netMm10,1082 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainMm10,1044 chainNetMm10,1047 mrna,527 netMm10,1044 xenoMrna,601 xenoRefGene,311 2003 augustusGene,333 chainMm10,1078 chainMm10,1110 chainNetMm10,1081 chainNetMm10,1113 netMm10,1078 netMm10,1110 2004 mrna,507 uniprot,2045 xenoMrna,581 2005 xenoRefGene,385 2006 windowmaskerSdust,107 2007 chainMm10,1017 chainNetMm10,1020 netMm10,1017 2008 augustusGene,308 2011 chainMm10,5 chainMm10,67 chainMm10,307 chainNetMm10,6 chainNetMm10,70 chainNetMm10,310 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 gold,16 netMm10,5 netMm10,67 netMm10,307 2012 uniprot,2000 2013 mrna,482 xenoMrna,556 2014 xenoRefGene,352 2022_03 uniprot,1911 2023 uniprot,1191 2111 chainMm10,719 chainNetMm10,722 netMm10,719 22 windowmaskerSdust,110 22102590 uniprot,2007 23 uniprot,2047 23193287 mrna,489 xenoMrna,563 24 augustusGene,311 24259432 xenoRefGene,359 25 genscan,225 xenoMrna,506 xenoRefGene,271 252111 chainMm10,724 chainNetMm10,727 netMm10,724 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainMm10,437 chainMm10,716 chainNetMm10,440 chainNetMm10,719 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netMm10,437 netMm10,716 uniprot,1123 uniprot,1194 xenoMrna,90 3.1 augustusGene,24 30 chainMm10,1080 chainNetMm10,1083 netMm10,1080 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 31600 chainMm10,735 chainMm10,747 chainNetMm10,738 chainNetMm10,750 netMm10,735 netMm10,747 32 mrna,510 xenoMrna,584 32000 chainMm10,759 chainNetMm10,762 netMm10,759 32111 chainMm10,721 chainNetMm10,724 netMm10,721 325 chainMm10,726 chainMm10,738 chainNetMm10,729 chainNetMm10,741 netMm10,726 netMm10,738 33 xenoRefGene,388 360 chainMm10,727 chainMm10,739 chainNetMm10,730 chainNetMm10,742 netMm10,727 netMm10,739 3600 chainMm10,732 chainMm10,744 chainNetMm10,735 chainNetMm10,747 netMm10,732 netMm10,744 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 4 mrna,530 xenoMrna,604 xenoRefGene,314 40 uniprot,2002 400 chainMm10,728 chainMm10,740 chainNetMm10,731 chainNetMm10,743 netMm10,728 netMm10,740 4000 chainMm10,756 chainNetMm10,759 netMm10,756 41 mrna,484 xenoMrna,558 418-420 nestedRepeats,359 rmsk,382 42 xenoRefGene,354 450 chainMm10,729 chainMm10,741 chainNetMm10,732 chainNetMm10,744 netMm10,729 netMm10,741 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 uniprot,2048 xenoMrna,88 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 5000 chainMm10,688 chainNetMm10,691 netMm10,688 56600 chainMm10,736 chainMm10,748 chainNetMm10,739 chainNetMm10,751 netMm10,736 netMm10,748 57000 chainMm10,760 chainNetMm10,763 netMm10,760 573-80 microsat,133 simpleRepeat,93 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainMm10,730 chainMm10,742 chainNetMm10,733 chainNetMm10,745 netMm10,730 netMm10,742 625 chainMm10,750 chainNetMm10,753 netMm10,750 637-44 augustusGene,313 656-64 mrna,531 xenoMrna,605 xenoRefGene,315 657-63 nestedRepeats,392 rmsk,415 660 chainMm10,751 chainNetMm10,754 netMm10,751 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 700 chainMm10,752 chainNetMm10,755 netMm10,752 72111 chainMm10,722 chainNetMm10,725 netMm10,722 743-8 nestedRepeats,414 rmsk,437 750 chainMm10,753 chainNetMm10,756 netMm10,753 7600 chainMm10,733 chainMm10,745 chainNetMm10,736 chainNetMm10,748 netMm10,733 netMm10,745 78-94 genscan,228 8000 chainMm10,757 chainNetMm10,760 netMm10,757 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainMm10,754 chainNetMm10,757 netMm10,754 9149143 genscan,230 93 uniprot,1483 96 mrna,432 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainMm10,76 chainMm10,146 chainMm10,199 chainMm10,457 chainMm10,467 chainMm10,471 chainMm10,538 chainMm10,555 chainMm10,558 chainMm10,625 chainMm10,630 chainMm10,636 chainMm10,640 chainMm10,651 chainMm10,683 chainMm10,802 chainMm10,816 chainMm10,822 chainMm10,828 chainMm10,832 chainMm10,835 chainMm10,863 chainMm10,1053 chainMm10,1077 chainMm10,1093 chainNetMm10,79 chainNetMm10,149 chainNetMm10,202 chainNetMm10,460 chainNetMm10,470 chainNetMm10,474 chainNetMm10,541 chainNetMm10,558 chainNetMm10,561 chainNetMm10,628 chainNetMm10,633 chainNetMm10,639 chainNetMm10,643 chainNetMm10,654 chainNetMm10,686 chainNetMm10,805 chainNetMm10,819 chainNetMm10,825 chainNetMm10,831 chainNetMm10,835 chainNetMm10,838 chainNetMm10,866 chainNetMm10,1056 chainNetMm10,1080 chainNetMm10,1096 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 gap,59 gap,63 gap,90 gap,96 gap,99 gc5BaseBw,44 genscan,102 genscan,132 gold,59 gold,118 gold,124 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,401 mrna,420 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netMm10,76 netMm10,146 netMm10,199 netMm10,457 netMm10,467 netMm10,471 netMm10,538 netMm10,555 netMm10,558 netMm10,625 netMm10,630 netMm10,636 netMm10,640 netMm10,651 netMm10,683 netMm10,802 netMm10,816 netMm10,822 netMm10,828 netMm10,832 netMm10,835 netMm10,863 netMm10,1053 netMm10,1077 netMm10,1093 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoMrna,109 xenoMrna,138 xenoMrna,155 xenoMrna,190 xenoMrna,216 xenoMrna,289 xenoMrna,408 xenoMrna,474 xenoMrna,494 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-90-25-100 chainMm10,676 chainNetMm10,679 netMm10,676 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainMm10,588 chainNetMm10,591 netMm10,588 about chainMm10,463 chainMm10,476 chainMm10,852 chainNetMm10,466 chainNetMm10,479 chainNetMm10,855 genscan,127 microsat,98 mrna,351 netMm10,463 netMm10,476 netMm10,852 simpleRepeat,59 xenoMrna,425 xenoRefGene,178 above chainMm10,535 chainMm10,547 chainMm10,567 chainNetMm10,538 chainNetMm10,550 chainNetMm10,570 nestedRepeats,218 netMm10,535 netMm10,547 netMm10,567 uniprot,1525 abundance chainMm10,181 chainNetMm10,184 netMm10,181 acad chainMm10,1073 chainNetMm10,1076 netMm10,1073 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 uniprot,896 uniprot,1706 uniprot,1838 accession ucscToINSDC,2 ucscToINSDC,23 xenoRefGene,118 xenoRefGene,130 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainMm10,675 chainNetMm10,678 netMm10,675 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids microsat,126 mrna,480 mrna,505 simpleRepeat,86 uniprot,620 uniprot,1998 xenoMrna,554 xenoMrna,579 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainMm10,598 chainNetMm10,601 nestedRepeats,147 netMm10,598 uniprot,1187 additional nestedRepeats,288 rmsk,295 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainMm10,938 chainMm10,970 chainNetMm10,941 chainNetMm10,973 netMm10,938 netMm10,970 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainMm10,86 chainNetMm10,89 netMm10,86 after chainMm10,910 chainNetMm10,913 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netMm10,910 uniprot,294 uniprot,1329 again uniprot,629 uniprot,1500 against mrna,344 mrna,393 xenoMrna,418 xenoMrna,465 xenoRefGene,222 agarwala windowmaskerSdust,98 agp gap,114 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 algorithms uniprot,52 align chainMm10,197 chainNetMm10,200 netMm10,197 uniprot,1216 alignable chainMm10,22 chainMm10,38 chainNetMm10,25 chainNetMm10,41 netMm10,22 netMm10,38 aligned chainMm10,591 chainNetMm10,594 mrna,392 mrna,404 netMm10,591 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoMrna,464 xenoMrna,477 xenoRefGene,221 xenoRefGene,243 aligning chainMm10,135 chainMm10,335 chainMm10,365 chainNetMm10,138 chainNetMm10,338 chainNetMm10,368 netMm10,135 netMm10,335 netMm10,365 uniprot,952 alignment chainMm10,261 chainMm10,1020 chainNetMm10,264 chainNetMm10,1023 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netMm10,8 netMm10,261 netMm10,1020 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoMrna,43 xenoMrna,436 xenoMrna,442 xenoMrna,454 xenoMrna,482 xenoMrna,597 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 chainMm10,9 chainMm10,63 chainMm10,450 chainMm10,603 chainMm10,615 chainMm10,623 chainMm10,650 chainMm10,768 chainMm10,1040 chainMm10,1105 chainNetMm10,12 chainNetMm10,66 chainNetMm10,453 chainNetMm10,606 chainNetMm10,618 chainNetMm10,626 chainNetMm10,653 chainNetMm10,771 chainNetMm10,1043 chainNetMm10,1108 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 mrna,17 mrna,418 netMm10,63 netMm10,450 netMm10,603 netMm10,615 netMm10,623 netMm10,650 netMm10,768 netMm10,1040 netMm10,1105 rmsk,306 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoMrna,17 xenoMrna,492 xenoRefGene,257 all augustusGene,207 chainMm10,622 chainNetMm10,625 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 gold,136 mrna,138 mrna,192 mrna,247 nestedRepeats,138 nestedRepeats,170 netMm10,622 rmsk,65 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 xenoMrna,212 xenoMrna,266 xenoMrna,321 allows augustusGene,168 chainMm10,81 chainNetMm10,84 mrna,337 netMm10,81 xenoMrna,411 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 already chainMm10,813 chainNetMm10,816 netMm10,813 also chainMm10,92 chainNetMm10,95 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 gold,44 mrna,219 mrna,327 mrna,371 netMm10,92 uniprot,666 uniprot,706 uniprot,1799 xenoMrna,293 xenoMrna,401 xenoMrna,445 alt uniprot,850 alter mrna,75 xenoMrna,149 alternating gold,90 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,121 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 xenoMrna,87 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainMm10,153 chainMm10,180 chainMm10,186 chainNetMm10,156 chainNetMm10,183 chainNetMm10,189 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netMm10,153 netMm10,180 netMm10,186 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainMm10,98 chainMm10,113 chainMm10,229 chainMm10,237 chainMm10,251 chainMm10,291 chainMm10,313 chainMm10,439 chainMm10,594 chainMm10,629 chainMm10,638 chainMm10,779 chainMm10,857 chainMm10,889 chainMm10,900 chainMm10,909 chainMm10,934 chainMm10,949 chainMm10,974 chainMm10,980 chainMm10,986 chainMm10,993 chainMm10,999 chainMm10,1063 chainMm10,1068 chainNetMm10,10 chainNetMm10,101 chainNetMm10,116 chainNetMm10,232 chainNetMm10,240 chainNetMm10,254 chainNetMm10,294 chainNetMm10,316 chainNetMm10,442 chainNetMm10,597 chainNetMm10,632 chainNetMm10,641 chainNetMm10,782 chainNetMm10,860 chainNetMm10,892 chainNetMm10,903 chainNetMm10,912 chainNetMm10,937 chainNetMm10,952 chainNetMm10,977 chainNetMm10,983 chainNetMm10,989 chainNetMm10,996 chainNetMm10,1002 chainNetMm10,1066 chainNetMm10,1071 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 gap,5 gap,44 gap,62 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,36 gold,53 gold,92 gold,106 gold,112 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netMm10,98 netMm10,113 netMm10,229 netMm10,237 netMm10,251 netMm10,291 netMm10,313 netMm10,439 netMm10,594 netMm10,629 netMm10,638 netMm10,779 netMm10,857 netMm10,889 netMm10,900 netMm10,909 netMm10,934 netMm10,949 netMm10,974 netMm10,980 netMm10,986 netMm10,993 netMm10,999 netMm10,1063 netMm10,1068 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 ucscToINSDC,11 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoMrna,9 xenoMrna,20 xenoMrna,33 xenoMrna,152 xenoMrna,313 xenoMrna,432 xenoMrna,503 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotated rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation chainMm10,302 chainNetMm10,305 netMm10,302 rmsk,38 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations genscan,120 nestedRepeats,71 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 any mrna,262 uniprot,660 uniprot,1146 uniprot,1250 xenoMrna,336 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 apply mrna,134 xenoMrna,208 approach uniprot,1531 appropriate xenoRefGene,112 apr genscan,224 mrna,528 xenoMrna,602 xenoRefGene,312 apsects gc5BaseBw,51 archive uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are augustusGene,27 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,142 chainMm10,212 chainMm10,223 chainMm10,324 chainMm10,393 chainMm10,414 chainMm10,421 chainMm10,504 chainMm10,695 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,145 chainNetMm10,215 chainNetMm10,226 chainNetMm10,327 chainNetMm10,396 chainNetMm10,417 chainNetMm10,424 chainNetMm10,507 chainNetMm10,698 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 gap,32 gap,55 genscan,25 genscan,160 gold,61 gold,84 gold,101 gold,120 gold,150 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netMm10,21 netMm10,40 netMm10,53 netMm10,142 netMm10,212 netMm10,223 netMm10,324 netMm10,393 netMm10,414 netMm10,421 netMm10,504 netMm10,695 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoMrna,52 xenoMrna,118 xenoMrna,169 xenoMrna,179 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainMm10,947 chainNetMm10,950 nestedRepeats,305 netMm10,947 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 as augustusGene,77 augustusGene,79 chainMm10,466 chainMm10,506 chainMm10,529 chainMm10,544 chainMm10,806 chainMm10,861 chainMm10,919 chainNetMm10,469 chainNetMm10,509 chainNetMm10,532 chainNetMm10,547 chainNetMm10,809 chainNetMm10,864 chainNetMm10,922 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 gap,34 genscan,35 genscan,37 gold,46 microsat,21 nestedRepeats,125 netMm10,466 netMm10,506 netMm10,529 netMm10,544 netMm10,806 netMm10,861 netMm10,919 rmsk,53 rmsk,55 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 xenoMrna,125 xenoMrna,130 ascii uniprot,1762 assembled gold,33 assemblies augustusGene,196 augustusGene,237 chainMm10,323 chainMm10,586 chainNetMm10,326 chainNetMm10,589 netMm10,323 netMm10,586 rmsk,107 assembly augustusGene,197 chainMm10,151 chainMm10,159 chainMm10,310 chainNetMm10,154 chainNetMm10,162 chainNetMm10,313 gap,14 gap,76 gap,113 gold,1 gold,2 gold,14 netMm10,151 netMm10,159 netMm10,310 ucscToINSDC,40 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 rmsk,224 simpleRepeat,51 uniprot,787 associates ucscToINSDC,16 astashyn xenoRefGene,328 at chainMm10,423 chainMm10,801 chainMm10,923 chainMm10,958 chainMm10,963 chainMm10,1004 chainNetMm10,426 chainNetMm10,804 chainNetMm10,926 chainNetMm10,961 chainNetMm10,966 chainNetMm10,1007 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netMm10,423 netMm10,801 netMm10,923 netMm10,958 netMm10,963 netMm10,1004 rmsk,243 rmsk,267 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoMrna,285 xenoMrna,504 xenoMrna,521 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 nestedRepeats,259 nestedRepeats,276 rmsk,73 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainMm10,607 chainMm10,614 chainNetMm10,610 chainNetMm10,617 netMm10,607 netMm10,614 axtchain chainMm10,619 chainMm10,706 chainMm10,954 chainNetMm10,622 chainNetMm10,709 chainNetMm10,957 netMm10,619 netMm10,706 netMm10,954 back chainMm10,599 chainNetMm10,602 netMm10,599 baertsch augustusGene,290 chainMm10,992 chainMm10,1050 chainMm10,1096 chainNetMm10,995 chainNetMm10,1053 chainNetMm10,1099 netMm10,992 netMm10,1050 netMm10,1096 bairoch uniprot,2022 band cytoBandIdeo,2 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,359 mrna,413 mrna,421 mrna,433 rmsk,217 rmsk,219 rmsk,222 xenoMrna,433 xenoMrna,486 xenoMrna,495 xenoMrna,507 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 based augustusGene,28 chainMm10,326 chainMm10,352 chainNetMm10,329 chainNetMm10,355 genscan,26 gold,62 netMm10,326 netMm10,352 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gc5BaseBw,25 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 be augustusGene,99 chainMm10,108 chainMm10,433 chainNetMm10,111 chainNetMm10,436 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 gap,25 gc5BaseBw,41 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 nestedRepeats,269 nestedRepeats,291 netMm10,108 netMm10,433 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoMrna,142 xenoMrna,164 xenoMrna,273 xenoMrna,283 xenoMrna,294 xenoMrna,325 xenoMrna,343 xenoMrna,353 xenoMrna,402 xenoMrna,446 xenoRefGene,88 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 xenoMrna,104 bed3 windowmaskerSdust,76 been chainMm10,574 chainNetMm10,577 nestedRepeats,89 netMm10,574 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainMm10,908 chainNetMm10,911 netMm10,908 uniprot,934 below chainMm10,682 chainNetMm10,685 genscan,154 genscan,168 nestedRepeats,68 netMm10,682 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,538 xenoMrna,566 best chainMm10,269 chainMm10,516 chainNetMm10,272 chainNetMm10,519 mrna,428 netMm10,269 netMm10,516 uniprot,1074 uniprot,1415 xenoMrna,502 xenoRefGene,267 beta uniprot,364 better mrna,55 xenoMrna,59 between chainMm10,51 chainMm10,624 chainMm10,855 chainNetMm10,54 chainNetMm10,627 chainNetMm10,858 gap,86 gold,56 gold,98 gold,103 mrna,18 netMm10,51 netMm10,624 netMm10,855 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed uniprot,1767 uniprot,1812 binaries uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 uniprot,1781 biocomput chainMm10,1043 chainNetMm10,1046 netMm10,1043 bioinformatics augustusGene,307 augustusGene,332 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 biological uniprot,320 biology genscan,200 birds augustusGene,203 black gap,35 gap,70 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,522 xenoMrna,596 xenoRefGene,306 blastz chainMm10,920 chainMm10,1107 chainNetMm10,923 chainNetMm10,1110 netMm10,920 netMm10,1107 blat mrna,398 mrna,520 xenoMrna,16 xenoMrna,472 xenoMrna,594 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainMm10,44 chainMm10,647 chainMm10,668 chainNetMm10,47 chainNetMm10,650 chainNetMm10,671 gold,108 gold,135 netMm10,44 netMm10,647 netMm10,668 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainMm10,96 chainMm10,117 chainMm10,171 chainMm10,898 chainNetMm10,99 chainNetMm10,120 chainNetMm10,174 chainNetMm10,901 netMm10,96 netMm10,117 netMm10,171 netMm10,898 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 bothgap chainMm10,749 chainNetMm10,752 netMm10,749 boundaries gold,83 box chainMm10,376 chainMm10,458 chainNetMm10,379 chainNetMm10,461 gap,71 mrna,154 mrna,165 mrna,205 netMm10,376 netMm10,458 xenoMrna,228 xenoMrna,239 xenoMrna,279 xenoRefGene,216 boxes chainMm10,123 chainMm10,133 chainMm10,447 chainNetMm10,126 chainNetMm10,136 chainNetMm10,450 gap,36 mrna,125 nestedRepeats,126 netMm10,123 netMm10,133 netMm10,447 xenoMrna,199 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch-point augustusGene,55 brian uniprot,1959 bridge gold,133 bridged gap,60 briefly uniprot,778 brown gold,93 gold,107 xenoRefGene,322 browser chainMm10,978 chainNetMm10,981 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 mrna,172 mrna,296 mrna,313 nestedRepeats,243 netMm10,978 ucscToINSDC,19 uniprot,1544 uniprot,1721 xenoMrna,246 xenoMrna,370 xenoMrna,387 browsing uniprot,1662 build uniprot,1552 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainMm10,549 chainNetMm10,552 netMm10,549 rmsk,311 uniprot,638 uniprot,1047 button chainMm10,347 chainNetMm10,350 netMm10,347 by augustusGene,147 augustusGene,266 augustusGene,282 chainMm10,110 chainMm10,126 chainMm10,317 chainMm10,380 chainMm10,417 chainMm10,435 chainMm10,815 chainMm10,927 chainMm10,946 chainMm10,966 chainMm10,990 chainMm10,1011 chainNetMm10,113 chainNetMm10,129 chainNetMm10,320 chainNetMm10,383 chainNetMm10,420 chainNetMm10,438 chainNetMm10,818 chainNetMm10,930 chainNetMm10,949 chainNetMm10,969 chainNetMm10,993 chainNetMm10,1014 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,86 microsat,110 mrna,214 mrna,460 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netMm10,110 netMm10,126 netMm10,317 netMm10,380 netMm10,417 netMm10,435 netMm10,815 netMm10,927 netMm10,946 netMm10,966 netMm10,990 netMm10,1011 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 ucscToINSDC,50 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoMrna,288 xenoMrna,534 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 windowmaskerSdust,30 c-90100-100-25 chainMm10,677 chainNetMm10,680 netMm10,677 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainMm10,962 chainMm10,1008 chainNetMm10,965 chainNetMm10,1011 netMm10,962 netMm10,1008 can augustusGene,98 chainMm10,91 chainMm10,107 chainNetMm10,94 chainNetMm10,110 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 mrna,67 mrna,198 netMm10,91 netMm10,107 rmsk,116 simpleRepeat,35 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoMrna,141 xenoMrna,272 xenoRefGene,87 cannot uniprot,1269 cases chainMm10,193 chainMm10,404 chainNetMm10,196 chainNetMm10,407 netMm10,193 netMm10,404 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainMm10,505 chainNetMm10,508 netMm10,505 cauldron chainMm10,1060 chainNetMm10,1063 netMm10,1060 cause chainMm10,487 chainNetMm10,490 netMm10,487 caused chainMm10,109 chainNetMm10,112 netMm10,109 cavanaugh mrna,466 xenoMrna,540 cdna augustusGene,299 cell uniprot,563 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,120 chainMm10,273 chainMm10,315 chainMm10,410 chainMm10,465 chainMm10,569 chainMm10,775 chainMm10,818 chainMm10,829 chainMm10,837 chainMm10,842 chainMm10,865 chainMm10,874 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,123 chainNetMm10,276 chainNetMm10,318 chainNetMm10,413 chainNetMm10,468 chainNetMm10,572 chainNetMm10,778 chainNetMm10,821 chainNetMm10,832 chainNetMm10,840 chainNetMm10,845 chainNetMm10,868 chainNetMm10,877 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netMm10,27 netMm10,57 netMm10,60 netMm10,120 netMm10,273 netMm10,315 netMm10,410 netMm10,465 netMm10,569 netMm10,775 netMm10,818 netMm10,829 netMm10,837 netMm10,842 netMm10,865 netMm10,874 uniprot,290 chained chainMm10,8 chainnet chainMm10,792 chainMm10,997 chainNetMm10,795 chainNetMm10,1000 netMm10,792 netMm10,997 chains chainMm10,196 chainMm10,208 chainMm10,219 chainMm10,320 chainMm10,359 chainMm10,392 chainMm10,397 chainMm10,419 chainMm10,431 chainMm10,438 chainMm10,495 chainMm10,665 chainMm10,680 chainMm10,694 chainMm10,763 chainMm10,784 chainMm10,799 chainMm10,859 chainMm10,890 chainMm10,985 chainNetMm10,199 chainNetMm10,211 chainNetMm10,222 chainNetMm10,323 chainNetMm10,362 chainNetMm10,395 chainNetMm10,400 chainNetMm10,422 chainNetMm10,434 chainNetMm10,441 chainNetMm10,498 chainNetMm10,668 chainNetMm10,683 chainNetMm10,697 chainNetMm10,766 chainNetMm10,787 chainNetMm10,802 chainNetMm10,862 chainNetMm10,893 chainNetMm10,988 netMm10,196 netMm10,208 netMm10,219 netMm10,320 netMm10,359 netMm10,392 netMm10,397 netMm10,419 netMm10,431 netMm10,438 netMm10,495 netMm10,665 netMm10,680 netMm10,694 netMm10,763 netMm10,784 netMm10,799 netMm10,859 netMm10,890 netMm10,985 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,71 xenoMrna,145 changed rmsk,285 uniprot,1382 characteristic mrna,276 xenoMrna,350 check chainMm10,342 chainNetMm10,345 netMm10,342 checkbox uniprot,231 chiaromonte chainMm10,1030 chainNetMm10,1033 netMm10,1030 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,232 mrna,271 uniprot,657 xenoMrna,306 xenoMrna,345 chosen mrna,294 xenoMrna,368 chr4 chainMm10,374 chainNetMm10,377 netMm10,374 chr6 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,148 chrom uniprot,1819 chromosome chainMm10,249 chainMm10,329 chainMm10,354 chainMm10,362 chainMm10,372 chainMm10,381 chainMm10,528 chainMm10,543 chainMm10,559 chainMm10,628 chainMm10,634 chainNetMm10,252 chainNetMm10,332 chainNetMm10,357 chainNetMm10,365 chainNetMm10,375 chainNetMm10,384 chainNetMm10,531 chainNetMm10,546 chainNetMm10,562 chainNetMm10,631 chainNetMm10,637 cytoBandIdeo,1 netMm10,249 netMm10,329 netMm10,354 netMm10,362 netMm10,372 netMm10,381 netMm10,528 netMm10,543 netMm10,559 netMm10,628 netMm10,634 ucscToINSDC,20 uniprot,1416 chromosome-based chainMm10,322 chainNetMm10,325 netMm10,322 chrpic1 uniprot,1816 chrpic1.fa windowmaskerSdust,62 windowmaskerSdust,71 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 clark mrna,468 xenoMrna,542 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 ucscToINSDC,52 cleaved uniprot,249 click chainMm10,455 chainMm10,469 chainNetMm10,458 chainNetMm10,472 gc5BaseBw,56 netMm10,455 netMm10,469 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking uniprot,1633 clipped nestedRepeats,224 clone gap,92 closed gap,26 closest augustusGene,241 cm xenoRefGene,333 code uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 xenoMrna,406 xenoMrna,431 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collapsed nestedRepeats,173 collection xenoRefGene,33 color chainMm10,350 chainNetMm10,353 genscan,86 genscan,96 mrna,77 mrna,273 netMm10,350 rmsk,207 xenoMrna,151 xenoMrna,347 xenoRefGene,58 xenoRefGene,169 coloration gold,94 colored chainMm10,325 chainNetMm10,328 mrna,373 netMm10,325 uniprot,160 uniprot,176 xenoMrna,447 coloring chainMm10,341 chainNetMm10,344 genscan,116 mrna,333 mrna,360 netMm10,341 xenoMrna,407 xenoMrna,434 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 column nestedRepeats,107 combination mrna,235 xenoMrna,309 combinations xenoMrna,120 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainMm10,10 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netMm10,10 compare mrna,342 xenoMrna,416 xenoRefGene,155 comparison genscan,109 uniprot,1260 compiled uniprot,1771 complete genscan,213 completely uniprot,1464 xenoRefGene,137 complex chainMm10,164 chainNetMm10,167 netMm10,164 complexity nestedRepeats,40 rmsk,30 rmsk,182 components gold,137 composed uniprot,1396 compositional genscan,41 uniprot,399 computational genscan,196 uniprot,51 conditional augustusGene,118 configuration chainMm10,314 chainNetMm10,317 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,30 nestedRepeats,114 netMm10,314 rmsk,138 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoMrna,34 xenoRefGene,46 configured gc5BaseBw,42 mrna,329 xenoMrna,403 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 consistency uniprot,402 consortium gold,22 uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,166 xenoMrna,240 contact uniprot,686 uniprot,1440 contain uniprot,1163 contained chainMm10,891 chainNetMm10,894 netMm10,891 contains gap,77 mrna,191 xenoMrna,265 xenoRefGene,142 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 context gap,95 contig gap,97 gold,82 gold,160 contigs gap,48 gap,88 gold,35 gold,39 gold,57 gold,74 gold,99 gold,116 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 xenoRefGene,92 convenience uniprot,404 conventions chainMm10,312 chainNetMm10,315 genscan,62 genscan,70 mrna,28 mrna,36 nestedRepeats,112 netMm10,312 rmsk,136 uniprot,447 xenoMrna,32 xenoMrna,40 xenoRefGene,44 xenoRefGene,52 converted chainMm10,605 chainNetMm10,608 netMm10,605 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponds mrna,174 xenoMrna,248 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 coverage uniprot,1485 covered chainMm10,814 chainNetMm10,817 netMm10,814 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create windowmaskerSdust,48 created chainMm10,989 chainNetMm10,992 microsat,89 netMm10,989 rmsk,13 uniprot,824 uniprot,1942 creates chainMm10,639 chainNetMm10,642 netMm10,639 credits augustusGene,247 chainMm10,915 chainNetMm10,918 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 gc5BaseBw,71 genscan,169 microsat,104 mrna,441 nestedRepeats,302 netMm10,915 rmsk,325 simpleRepeat,66 ucscToINSDC,42 uniprot,1938 xenoMrna,515 xenoRefGene,280 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,249 mrna,267 mrna,305 mrna,323 xenoMrna,323 xenoMrna,341 xenoMrna,379 xenoMrna,397 cruz chainMm10,965 chainMm10,1010 chainNetMm10,968 chainNetMm10,1013 netMm10,965 netMm10,1010 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 culex augustusGene,220 curated uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,109 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 xenoMrna,183 currently gold,79 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainMm10,1057 chainMm10,1101 chainNetMm10,1060 chainNetMm10,1104 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 genscan,192 netMm10,1057 netMm10,1101 d23-6 mrna,513 xenoMrna,587 d36-42 mrna,487 xenoMrna,561 d501-4 xenoRefGene,391 d71-5 uniprot,2005 d756-63 xenoRefGene,357 da mrna,465 mrna,493 xenoMrna,539 xenoMrna,567 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darkly mrna,50 xenoMrna,54 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 gc5BaseBw,73 microsat,47 mrna,452 nestedRepeats,263 nestedRepeats,280 rmsk,126 rmsk,287 ucscToINSDC,34 ucscToINSDC,44 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoMrna,526 xenoRefGene,36 xenoRefGene,290 database chainMm10,981 chainNetMm10,984 mrna,485 mrna,511 nestedRepeats,345 netMm10,981 rmsk,125 rmsk,368 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoMrna,559 xenoMrna,585 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases mrna,459 xenoMrna,533 david chainMm10,975 chainNetMm10,978 netMm10,975 de augustusGene,303 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,306 chainNetMm10,5 chainNetMm10,69 chainNetMm10,309 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 gold,15 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,306 rmsk,412 rmsk,434 default chainMm10,318 chainNetMm10,321 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netMm10,318 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined uniprot,305 uniprot,1387 deletion chainMm10,147 chainMm10,1062 chainNetMm10,150 chainNetMm10,1065 mrna,382 netMm10,147 netMm10,1062 rmsk,220 xenoMrna,456 deletions chainMm10,115 chainMm10,179 chainNetMm10,118 chainNetMm10,182 netMm10,115 netMm10,179 dense gold,68 mrna,42 nestedRepeats,157 nestedRepeats,168 xenoMrna,46 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gap,10 gold,72 windowmaskerSdust,15 deprecated uniprot,1044 derived chainMm10,765 chainNetMm10,768 netMm10,765 uniprot,830 described chainMm10,772 chainNetMm10,775 genscan,161 nestedRepeats,60 nestedRepeats,338 netMm10,772 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 description augustusGene,12 chainMm10,12 chainMm10,777 chainNetMm10,15 chainNetMm10,780 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,12 mrna,58 nestedRepeats,14 netMm10,12 netMm10,777 rmsk,9 simpleRepeat,11 ucscToINSDC,13 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoMrna,11 xenoMrna,132 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed uniprot,1355 desired mrna,234 xenoMrna,308 destined uniprot,244 detail genscan,164 detailed augustusGene,90 chainMm10,461 chainMm10,480 chainNetMm10,464 chainNetMm10,483 nestedRepeats,70 netMm10,461 netMm10,480 rmsk,37 uniprot,692 details rmsk,119 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determined windowmaskerSdust,19 determining chainMm10,485 chainNetMm10,488 netMm10,485 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainMm10,922 chainMm10,957 chainMm10,1003 chainNetMm10,925 chainNetMm10,960 chainNetMm10,1006 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netMm10,922 netMm10,957 netMm10,1003 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainMm10,560 chainNetMm10,563 gc5BaseBw,50 genscan,54 netMm10,560 rmsk,149 uniprot,634 xenoMrna,113 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 uniprot,993 directory rmsk,134 discarded chainMm10,691 chainNetMm10,694 netMm10,691 xenoRefGene,238 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainMm10,241 chainMm10,311 chainMm10,356 chainMm10,386 chainMm10,445 chainMm10,474 chainMm10,503 chainMm10,979 chainNetMm10,244 chainNetMm10,314 chainNetMm10,359 chainNetMm10,389 chainNetMm10,448 chainNetMm10,477 chainNetMm10,506 chainNetMm10,982 genscan,61 genscan,69 genscan,104 gold,131 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 nestedRepeats,111 netMm10,241 netMm10,311 netMm10,356 netMm10,386 netMm10,445 netMm10,474 netMm10,503 netMm10,979 rmsk,135 rmsk,141 rmsk,212 uniprot,446 xenoMrna,31 xenoMrna,39 xenoMrna,47 xenoMrna,147 xenoMrna,174 xenoMrna,204 xenoMrna,349 xenoMrna,373 xenoMrna,389 xenoMrna,405 xenoMrna,457 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainMm10,422 chainMm10,519 chainMm10,696 chainNetMm10,425 chainNetMm10,522 chainNetMm10,699 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netMm10,422 netMm10,519 netMm10,696 xenoRefGene,204 displays chainMm10,122 chainNetMm10,125 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netMm10,122 rmsk,145 simpleRepeat,14 xenoMrna,14 dissertation augustusGene,105 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,85 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainMm10,914 chainNetMm10,917 nestedRepeats,212 netMm10,914 divided uniprot,56 dj mrna,473 mrna,497 xenoMrna,547 xenoMrna,571 dl mrna,501 xenoMrna,575 dna chainMm10,1023 chainNetMm10,1026 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netMm10,1023 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 xenoMrna,110 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 uniprot,168 uniprot,1129 doc rmsk,132 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainMm10,130 chainMm10,160 chainNetMm10,133 chainNetMm10,163 netMm10,130 netMm10,160 double-lined chainMm10,221 chainNetMm10,224 netMm10,221 double-sided chainMm10,104 chainNetMm10,107 netMm10,104 download uniprot,1744 uniprot,1983 downloaded ucscToINSDC,36 uniprot,1741 uniprot,1777 downloading uniprot,1787 downloads rmsk,76 uniprot,1698 dr xenoRefGene,367 draft gap,91 gold,13 drawn gap,67 gold,127 draws uniprot,1532 drosophila augustusGene,213 due chainMm10,144 chainMm10,214 chainMm10,226 chainNetMm10,147 chainNetMm10,217 chainNetMm10,229 netMm10,144 netMm10,214 netMm10,226 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainMm10,1061 chainNetMm10,1064 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netMm10,1061 during chainMm10,819 chainNetMm10,822 gap,27 netMm10,819 dynamic chainMm10,652 chainNetMm10,655 netMm10,652 e uniprot,2021 e.g chainMm10,373 chainNetMm10,376 netMm10,373 uniprot,398 uniprot,467 each chainMm10,259 chainNetMm10,262 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,163 nestedRepeats,120 netMm10,259 uniprot,151 xenoMrna,237 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either chainMm10,127 chainNetMm10,130 gap,50 netMm10,127 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainMm10,825 chainNetMm10,828 netMm10,825 end rmsk,245 uniprot,126 uniprot,210 uniprot,1823 ensembl uniprot,731 uniprot,834 uniprot,865 enter chainMm10,367 chainNetMm10,370 netMm10,367 entered mrna,200 mrna,210 xenoMrna,274 xenoMrna,284 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 ermolaeva xenoRefGene,330 especially mrna,101 xenoMrna,175 est mrna,11 xenoMrna,10 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every chainMm10,275 chainNetMm10,278 netMm10,275 uniprot,1571 evidence gold,66 evolution chainMm10,1058 chainNetMm10,1061 netMm10,1058 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 ew mrna,477 xenoMrna,551 exact uniprot,1622 uniprot,1747 example mrna,132 mrna,185 rmsk,256 uniprot,1450 uniprot,1811 uniprot,1901 xenoMrna,206 xenoMrna,259 except uniprot,508 exception gap,19 gold,143 exclude mrna,80 mrna,285 mrna,291 xenoMrna,154 xenoMrna,359 xenoMrna,365 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exist chainMm10,406 chainNetMm10,409 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,97 netMm10,406 exon augustusGene,86 exons chainMm10,48 chainNetMm10,51 genscan,44 netMm10,48 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 uniprot,1716 expressed mrna,140 xenoMrna,214 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extracted nestedRepeats,23 f chainMm10,1031 chainNetMm10,1034 netMm10,1031 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor mrna,177 xenoMrna,251 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 genscan,60 nestedRepeats,298 rmsk,321 uniprot,1839 far uniprot,599 farrell xenoRefGene,332 feature chainMm10,245 chainNetMm10,248 genscan,129 mrna,335 netMm10,245 uniprot,64 uniprot,524 uniprot,613 xenoMrna,409 xenoRefGene,147 xenoRefGene,180 features uniprot,694 uniprot,1805 xenoRefGene,83 fed chainMm10,617 chainNetMm10,620 netMm10,617 feedback uniprot,1445 uniprot,1961 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files gap,115 uniprot,1863 fill chainMm10,849 chainMm10,882 chainNetMm10,852 chainNetMm10,885 netMm10,849 netMm10,882 filled chainMm10,415 chainMm10,434 chainMm10,831 chainMm10,904 chainNetMm10,418 chainNetMm10,437 chainNetMm10,834 chainNetMm10,907 netMm10,415 netMm10,434 netMm10,831 netMm10,904 filter chainMm10,379 chainNetMm10,382 genscan,82 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 netMm10,379 uniprot,187 uniprot,664 xenoMrna,139 xenoMrna,188 xenoMrna,201 xenoMrna,210 xenoMrna,257 xenoMrna,298 xenoMrna,322 xenoMrna,340 xenoMrna,378 xenoMrna,396 filtered mrna,287 uniprot,1480 uniprot,1499 xenoMrna,361 filtering mrna,226 uniprot,693 uniprot,912 uniprot,1154 xenoMrna,300 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainMm10,661 chainNetMm10,664 netMm10,661 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainMm10,286 chainNetMm10,289 netMm10,286 finger uniprot,327 finishing gap,29 first chainMm10,789 chainNetMm10,792 netMm10,789 uniprot,70 xenoMrna,72 fish augustusGene,201 fit chainMm10,809 chainNetMm10,812 nestedRepeats,175 netMm10,809 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainMm10,670 chainNetMm10,673 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,79 genscan,81 netMm10,670 windowmaskerSdust,56 follows genscan,67 mrna,33 xenoMrna,37 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainMm10,258 chainMm10,274 chainMm10,285 chainMm10,292 chainMm10,492 chainNetMm10,261 chainNetMm10,277 chainNetMm10,288 chainNetMm10,295 chainNetMm10,495 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netMm10,258 netMm10,274 netMm10,285 netMm10,292 netMm10,492 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 ucscToINSDC,45 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoMrna,41 xenoMrna,64 xenoMrna,134 xenoMrna,205 xenoMrna,236 xenoMrna,258 xenoMrna,422 xenoMrna,435 xenoMrna,448 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainMm10,608 chainNetMm10,611 netMm10,608 formats uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainMm10,441 chainNetMm10,444 netMm10,441 found augustusGene,100 mrna,416 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 xenoMrna,489 four chainMm10,509 chainNetMm10,512 netMm10,509 xenoMrna,119 fragment gap,84 gold,152 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from augustusGene,19 chainMm10,176 chainMm10,304 chainMm10,561 chainMm10,584 chainMm10,766 chainMm10,939 chainMm10,971 chainNetMm10,179 chainNetMm10,307 chainNetMm10,564 chainNetMm10,587 chainNetMm10,769 chainNetMm10,942 chainNetMm10,974 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 genscan,15 gold,3 mrna,7 mrna,449 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netMm10,176 netMm10,304 netMm10,561 netMm10,584 netMm10,766 netMm10,939 netMm10,971 rmsk,86 ucscToINSDC,25 ucscToINSDC,37 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoMrna,6 xenoMrna,25 xenoMrna,523 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainMm10,239 chainMm10,385 chainNetMm10,242 chainNetMm10,388 nestedRepeats,118 netMm10,239 netMm10,385 rmsk,140 uniprot,486 uniprot,528 uniprot,540 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 gc5BaseBw,20 microsat,115 simpleRepeat,75 g-25-100100-90 chainMm10,678 chainNetMm10,681 netMm10,678 gambiae augustusGene,219 gap chainMm10,77 chainMm10,87 chainMm10,188 chainMm10,478 chainMm10,490 chainMm10,513 chainMm10,531 chainMm10,546 chainMm10,563 chainMm10,702 chainMm10,833 chainNetMm10,80 chainNetMm10,90 chainNetMm10,191 chainNetMm10,481 chainNetMm10,493 chainNetMm10,516 chainNetMm10,534 chainNetMm10,549 chainNetMm10,566 chainNetMm10,705 chainNetMm10,836 gap,1 gap,2 gap,54 gap,61 gap,74 gold,54 mrna,369 netMm10,77 netMm10,87 netMm10,188 netMm10,478 netMm10,490 netMm10,513 netMm10,531 netMm10,546 netMm10,563 netMm10,702 netMm10,833 xenoMrna,443 gapless chainMm10,645 chainNetMm10,648 netMm10,645 gaps chainMm10,83 chainMm10,94 chainMm10,106 chainMm10,140 chainMm10,165 chainMm10,211 chainMm10,222 chainMm10,405 chainMm10,427 chainMm10,454 chainMm10,888 chainMm10,894 chainNetMm10,86 chainNetMm10,97 chainNetMm10,109 chainNetMm10,143 chainNetMm10,168 chainNetMm10,214 chainNetMm10,225 chainNetMm10,408 chainNetMm10,430 chainNetMm10,457 chainNetMm10,891 chainNetMm10,897 gap,11 gap,16 gap,23 gap,31 gap,83 gap,85 gap,108 gold,96 netMm10,83 netMm10,94 netMm10,106 netMm10,140 netMm10,165 netMm10,211 netMm10,222 netMm10,405 netMm10,427 netMm10,454 netMm10,888 netMm10,894 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 gca_000241765.1 gold,23 genbank mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 uniprot,376 xenoMrna,7 xenoMrna,24 xenoMrna,552 xenoMrna,576 gencode uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gc5BaseBw,36 genedx uniprot,1973 generally rmsk,72 uniprot,248 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 nestedRepeats,282 rmsk,289 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 genscan,2 genscan,6 genscan,59 simpleRepeat,41 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainMm10,19 chainMm10,74 chainMm10,206 chainMm10,281 chainMm10,294 chainMm10,787 chainMm10,1108 chainNetMm10,22 chainNetMm10,77 chainNetMm10,209 chainNetMm10,284 chainNetMm10,297 chainNetMm10,790 chainNetMm10,1111 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 gold,20 gold,28 gold,158 mrna,26 mrna,395 mrna,525 nestedRepeats,405 netMm10,19 netMm10,74 netMm10,206 netMm10,281 netMm10,294 netMm10,787 netMm10,1108 rmsk,428 ucscToINSDC,18 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoMrna,469 xenoMrna,599 xenoRefGene,226 xenoRefGene,309 genome.bed uniprot,1935 uniprot,1937 genomes chainMm10,25 chainMm10,589 chainMm10,1070 chainNetMm10,28 chainNetMm10,592 chainNetMm10,1073 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netMm10,25 netMm10,589 netMm10,1070 rmsk,392 rmsk,406 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic chainMm10,497 chainMm10,1022 chainMm10,1038 chainNetMm10,500 chainNetMm10,1025 chainNetMm10,1041 genscan,92 genscan,218 mrna,346 mrna,437 netMm10,497 netMm10,1022 netMm10,1038 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoMrna,102 xenoMrna,420 xenoMrna,511 xenoRefGene,164 xenoRefGene,276 genomics chainMm10,11 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netMm10,11 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 give xenoMrna,112 given uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go genscan,113 mrna,354 mrna,377 uniprot,1412 xenoMrna,428 xenoMrna,451 xenoRefGene,181 gold gold,91 gold,105 goldenpath uniprot,1907 gr xenoRefGene,323 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainMm10,444 chainNetMm10,447 gold,130 netMm10,444 rmsk,211 grcm38 chainMm10,6 chainMm10,68 chainMm10,308 chainNetMm10,7 chainNetMm10,71 chainNetMm10,311 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,308 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainMm10,637 chainNetMm10,640 netMm10,637 uniprot,430 grouped gold,41 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainMm10,941 chainMm10,1098 chainNetMm10,944 chainNetMm10,1101 netMm10,941 netMm10,1098 harris chainMm10,1015 chainNetMm10,1018 netMm10,1015 hart xenoRefGene,334 has mrna,63 nestedRepeats,246 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoMrna,137 xenoRefGene,68 haussler augustusGene,292 chainMm10,976 chainMm10,1056 chainMm10,1100 chainNetMm10,979 chainNetMm10,1059 chainNetMm10,1103 netMm10,976 netMm10,1056 netMm10,1100 have chainMm10,573 chainNetMm10,576 nestedRepeats,88 netMm10,573 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,410 mrna,419 xenoMrna,483 xenoMrna,493 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 gc5BaseBw,61 helpful mrna,91 xenoMrna,165 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 hence xenoMrna,91 here rmsk,127 uniprot,1795 xenoMrna,86 heterochromatic gap,22 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 uniprot,1814 uniprot,1906 uniprot,1916 hiatt xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,192 hierarchy chainMm10,824 chainNetMm10,827 netMm10,824 high gc5BaseBw,29 higher chainMm10,856 chainNetMm10,859 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netMm10,856 rmsk,230 higher-level chainMm10,873 chainNetMm10,876 netMm10,873 higher-scoring chainMm10,817 chainMm10,836 chainNetMm10,820 chainNetMm10,839 netMm10,817 netMm10,836 highest mrna,412 uniprot,948 uniprot,1113 xenoMrna,485 xenoRefGene,251 highest-scoring chainMm10,396 chainMm10,783 chainNetMm10,399 chainNetMm10,786 netMm10,396 netMm10,783 highlight gc5BaseBw,49 mrna,282 xenoMrna,356 highlighted mrna,252 mrna,270 uniprot,580 xenoMrna,326 xenoMrna,344 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainMm10,1052 chainNetMm10,1055 netMm10,1052 hiram gc5BaseBw,82 ucscToINSDC,51 his chainMm10,950 chainNetMm10,953 netMm10,950 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainMm10,929 chainNetMm10,932 netMm10,929 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainMm10,884 chainMm10,901 chainNetMm10,887 chainNetMm10,904 netMm10,884 netMm10,901 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 rmsk,355 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainMm10,1069 chainNetMm10,1072 genscan,217 nestedRepeats,404 netMm10,1069 rmsk,427 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainMm10,1104 chainNetMm10,1107 netMm10,1104 i mrna,471 mrna,495 xenoMrna,545 xenoMrna,569 id nestedRepeats,10 nestedRepeats,106 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainMm10,945 chainNetMm10,948 netMm10,945 xenoRefGene,255 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,414 mrna,422 mrna,434 nestedRepeats,187 nestedRepeats,222 xenoMrna,487 xenoMrna,496 xenoMrna,508 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,40 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 nestedRepeats,137 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoMrna,299 xenoMrna,311 xenoMrna,327 xenoMrna,363 xenoMrna,380 xenoRefGene,205 ignored uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 improved chainMm10,1018 chainNetMm10,1021 netMm10,1018 in augustusGene,101 chainMm10,31 chainMm10,95 chainMm10,116 chainMm10,148 chainMm10,155 chainMm10,170 chainMm10,189 chainMm10,192 chainMm10,232 chainMm10,253 chainMm10,300 chainMm10,333 chainMm10,363 chainMm10,375 chainMm10,384 chainMm10,402 chainMm10,407 chainMm10,416 chainMm10,428 chainMm10,442 chainMm10,484 chainMm10,501 chainMm10,532 chainMm10,550 chainMm10,564 chainMm10,600 chainMm10,697 chainMm10,785 chainMm10,826 chainMm10,834 chainMm10,850 chainMm10,883 chainMm10,895 chainMm10,1065 chainNetMm10,34 chainNetMm10,98 chainNetMm10,119 chainNetMm10,151 chainNetMm10,158 chainNetMm10,173 chainNetMm10,192 chainNetMm10,195 chainNetMm10,235 chainNetMm10,256 chainNetMm10,303 chainNetMm10,336 chainNetMm10,366 chainNetMm10,378 chainNetMm10,387 chainNetMm10,405 chainNetMm10,410 chainNetMm10,419 chainNetMm10,431 chainNetMm10,445 chainNetMm10,487 chainNetMm10,504 chainNetMm10,535 chainNetMm10,553 chainNetMm10,567 chainNetMm10,603 chainNetMm10,700 chainNetMm10,788 chainNetMm10,829 chainNetMm10,837 chainNetMm10,853 chainNetMm10,886 chainNetMm10,898 chainNetMm10,1068 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 gap,12 gap,37 gap,93 gap,111 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,67 gold,128 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netMm10,31 netMm10,95 netMm10,116 netMm10,148 netMm10,155 netMm10,170 netMm10,189 netMm10,192 netMm10,232 netMm10,253 netMm10,300 netMm10,333 netMm10,363 netMm10,375 netMm10,384 netMm10,402 netMm10,407 netMm10,416 netMm10,428 netMm10,442 netMm10,484 netMm10,501 netMm10,532 netMm10,550 netMm10,564 netMm10,600 netMm10,697 netMm10,785 netMm10,826 netMm10,834 netMm10,850 netMm10,883 netMm10,895 netMm10,1065 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoMrna,23 xenoMrna,45 xenoMrna,68 xenoMrna,171 xenoMrna,192 xenoMrna,215 xenoMrna,225 xenoMrna,243 xenoMrna,296 xenoMrna,478 xenoRefGene,244 include mrna,79 mrna,284 mrna,308 rmsk,159 rmsk,172 xenoMrna,153 xenoMrna,358 xenoMrna,382 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes rmsk,198 uniprot,1587 including rmsk,188 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainMm10,139 chainMm10,247 chainNetMm10,142 chainNetMm10,250 mrna,52 nestedRepeats,153 netMm10,139 netMm10,247 xenoMrna,56 indicates xenoMrna,73 xenoMrna,95 xenoRefGene,60 individual chainMm10,244 chainMm10,499 chainNetMm10,247 chainNetMm10,502 netMm10,244 netMm10,499 information augustusGene,36 chainMm10,462 chainMm10,475 chainMm10,481 chainMm10,851 chainNetMm10,465 chainNetMm10,478 chainNetMm10,484 chainNetMm10,854 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 gc5BaseBw,55 genscan,51 genscan,126 microsat,97 mrna,350 mrna,376 nestedRepeats,53 nestedRepeats,301 netMm10,462 netMm10,475 netMm10,481 netMm10,851 rmsk,89 rmsk,324 simpleRepeat,58 uniprot,678 uniprot,1842 uniprot,2038 xenoMrna,63 xenoMrna,424 xenoMrna,450 xenoRefGene,177 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainMm10,575 chainMm10,907 chainNetMm10,578 chainNetMm10,910 netMm10,575 netMm10,907 insertion chainMm10,154 chainNetMm10,157 mrna,381 netMm10,154 rmsk,223 xenoMrna,455 insertions nestedRepeats,86 nestedRepeats,92 inside uniprot,560 inspection uniprot,1653 instead xenoRefGene,120 institute nestedRepeats,55 rmsk,91 instructions uniprot,1785 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international gold,17 mrna,456 ucscToINSDC,5 ucscToINSDC,27 xenoMrna,530 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainMm10,606 chainMm10,618 chainMm10,635 chainMm10,810 chainNetMm10,609 chainNetMm10,621 chainNetMm10,638 chainNetMm10,813 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 gold,34 gold,42 mrna,201 netMm10,606 netMm10,618 netMm10,635 netMm10,810 uniprot,57 windowmaskerSdust,80 xenoMrna,275 intractable gap,21 intron augustusGene,88 augustusGene,330 introns chainMm10,56 chainNetMm10,59 genscan,45 netMm10,56 inv chainMm10,537 chainNetMm10,540 netMm10,537 inversions chainMm10,112 chainMm10,177 chainNetMm10,115 chainNetMm10,180 netMm10,112 netMm10,177 invertebrate xenoMrna,21 inverted chainMm10,869 chainNetMm10,872 netMm10,869 involve chainMm10,167 chainNetMm10,170 netMm10,167 is chainMm10,283 chainMm10,303 chainMm10,482 chainNetMm10,286 chainNetMm10,306 chainNetMm10,485 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,58 gap,66 gap,98 gc5BaseBw,32 gold,126 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netMm10,283 netMm10,303 netMm10,482 rmsk,95 rmsk,360 simpleRepeat,28 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 xenoMrna,67 xenoMrna,121 xenoMrna,127 xenoMrna,315 xenoMrna,331 xenoMrna,367 xenoMrna,384 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,486 mrna,512 uniprot,2004 xenoMrna,560 xenoMrna,586 xenoRefGene,356 xenoRefGene,390 it chainMm10,90 chainMm10,282 chainMm10,536 chainMm10,548 chainNetMm10,93 chainNetMm10,285 chainNetMm10,539 chainNetMm10,551 gap,57 genscan,143 netMm10,90 netMm10,282 netMm10,536 netMm10,548 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 xenoRefGene,77 items chainMm10,500 chainNetMm10,503 mrna,46 mrna,84 mrna,94 mrna,288 nestedRepeats,171 nestedRepeats,180 netMm10,500 xenoMrna,50 xenoMrna,158 xenoMrna,168 xenoMrna,362 xenoRefGene,104 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 genscan,220 mrna,475 mrna,499 nestedRepeats,341 rmsk,364 xenoMrna,549 xenoMrna,573 xenoRefGene,335 jan chainMm10,1111 chainNetMm10,1114 microsat,129 mrna,483 mrna,508 netMm10,1111 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoMrna,557 xenoMrna,582 xenoRefGene,353 xenoRefGene,386 jim chainMm10,967 chainMm10,994 chainMm10,1012 chainNetMm10,970 chainNetMm10,997 chainNetMm10,1015 netMm10,967 netMm10,994 netMm10,1012 joined chainMm10,124 chainNetMm10,127 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netMm10,124 journal nestedRepeats,349 rmsk,372 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 k augustusGene,268 mrna,469 xenoMrna,543 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,470 mrna,494 xenoMrna,544 xenoMrna,568 kasif genscan,193 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainMm10,641 chainNetMm10,644 netMm10,641 kd-trees chainMm10,659 chainNetMm10,662 netMm10,659 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainMm10,968 chainMm10,995 chainMm10,1013 chainMm10,1048 chainMm10,1090 chainNetMm10,971 chainNetMm10,998 chainNetMm10,1016 chainNetMm10,1051 chainNetMm10,1093 mrna,518 netMm10,968 netMm10,995 netMm10,1013 netMm10,1048 netMm10,1090 xenoMrna,592 xenoRefGene,303 kept mrna,440 xenoMrna,514 xenoRefGene,279 km xenoRefGene,339 known chainMm10,918 chainNetMm10,921 gap,56 gold,45 gold,122 netMm10,918 xenoRefGene,15 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled nestedRepeats,132 uniprot,457 xenoRefGene,106 labels nestedRepeats,161 xenoRefGene,78 landrum xenoRefGene,336 largely chainMm10,143 chainNetMm10,146 netMm10,143 largest chainMm10,395 chainNetMm10,398 netMm10,395 lastz chainMm10,593 chainMm10,767 chainMm10,916 chainNetMm10,596 chainNetMm10,770 chainNetMm10,919 netMm10,593 netMm10,767 netMm10,916 lavtoaxt chainMm10,611 chainNetMm10,614 netMm10,611 least microsat,29 microsat,78 mrna,431 xenoMrna,505 xenoRefGene,270 lee uniprot,1955 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less uniprot,680 xenoRefGene,234 level chainMm10,390 chainMm10,424 chainMm10,429 chainMm10,436 chainMm10,494 chainMm10,521 chainMm10,534 chainMm10,566 chainNetMm10,393 chainNetMm10,427 chainNetMm10,432 chainNetMm10,439 chainNetMm10,497 chainNetMm10,524 chainNetMm10,537 chainNetMm10,569 mrna,423 netMm10,390 netMm10,424 netMm10,429 netMm10,436 netMm10,494 netMm10,521 netMm10,534 netMm10,566 rmsk,205 xenoMrna,497 xenoRefGene,62 xenoRefGene,262 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,237 like chainMm10,47 chainMm10,55 chainNetMm10,50 chainNetMm10,58 netMm10,47 netMm10,55 uniprot,1541 likely augustusGene,111 microsat,17 line chainMm10,472 chainNetMm10,475 gap,65 gold,125 nestedRepeats,151 netMm10,472 rmsk,165 uniprot,1872 uniprot,1876 line-up chainMm10,539 chainNetMm10,542 netMm10,539 line-ups chainMm10,524 chainNetMm10,527 netMm10,524 lineage-specific chainMm10,942 chainNetMm10,945 netMm10,942 linear chainMm10,701 chainNetMm10,704 netMm10,701 lineargap chainMm10,707 chainNetMm10,710 netMm10,707 lines chainMm10,131 chainMm10,138 chainMm10,161 chainMm10,452 chainNetMm10,134 chainNetMm10,141 chainNetMm10,164 chainNetMm10,455 nestedRepeats,131 netMm10,131 netMm10,138 netMm10,161 netMm10,452 link gc5BaseBw,63 uniprot,491 uniprot,1675 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,472 mrna,496 xenoMrna,546 xenoMrna,570 lipoification uniprot,577 list mrna,158 uniprot,979 uniprot,1165 uniprot,1831 xenoMrna,232 literature uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainMm10,111 chainMm10,183 chainNetMm10,114 chainNetMm10,186 nestedRepeats,98 netMm10,111 netMm10,183 located simpleRepeat,21 location chainMm10,252 chainNetMm10,255 netMm10,252 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 uniprot,451 logic mrna,236 xenoMrna,310 long rmsk,161 rmsk,166 longer chainMm10,82 chainNetMm10,85 netMm10,82 longest chainMm10,517 chainNetMm10,520 netMm10,517 look chainMm10,46 chainNetMm10,49 netMm10,46 loose chainMm10,708 chainNetMm10,711 netMm10,708 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lower chainMm10,493 chainNetMm10,496 netMm10,493 lower-level chainMm10,858 chainMm10,864 chainNetMm10,861 chainNetMm10,867 netMm10,858 netMm10,864 ls-snp uniprot,1536 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,467 xenoMrna,541 made rmsk,110 uniprot,931 uniprot,938 maglott xenoRefGene,366 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,76 rmsk,123 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 rmsk,391 rmsk,405 xenoRefGene,346 manner uniprot,1469 manual uniprot,1652 many chainMm10,403 chainNetMm10,406 mrna,93 netMm10,403 uniprot,932 uniprot,1124 xenoMrna,167 map chainMm10,331 chainNetMm10,334 netMm10,331 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 ucscToINSDC,10 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark uniprot,1539 uniprot,1956 marked gap,110 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainMm10,257 chainMm10,518 chainMm10,556 chainNetMm10,260 chainNetMm10,521 chainNetMm10,559 mrna,246 mrna,261 mrna,302 mrna,320 netMm10,257 netMm10,518 netMm10,556 uniprot,1305 uniprot,1341 xenoMrna,85 xenoMrna,320 xenoMrna,335 xenoMrna,376 xenoMrna,394 matches mrna,53 xenoMrna,57 matching chainMm10,260 chainNetMm10,263 netMm10,260 uniprot,1068 uniprot,1075 xenoMrna,100 matrix chainMm10,671 chainMm10,703 chainNetMm10,674 chainNetMm10,706 netMm10,671 netMm10,703 mature unipChain,3 uniprot,251 uniprot,292 maximally chainMm10,663 chainNetMm10,666 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netMm10,663 maximilian uniprot,1944 maxtracks augustusGene,139 may chainMm10,174 chainMm10,432 chainNetMm10,177 chainNetMm10,435 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 nestedRepeats,268 nestedRepeats,290 netMm10,174 netMm10,432 rmsk,297 rmsk,307 simpleRepeat,43 uniprot,2046 xenoMrna,163 xenoMrna,282 xenoMrna,292 xenoMrna,400 xenoMrna,444 mcgarvey xenoRefGene,338 md5 uniprot,1601 mediating uniprot,314 medium xenoRefGene,73 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu xenoRefGene,174 method uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 chainMm10,568 chainMm10,771 chainNetMm10,571 chainNetMm10,774 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 genscan,130 genscan,197 microsat,45 mrna,386 nestedRepeats,244 netMm10,568 netMm10,771 rmsk,286 simpleRepeat,55 uniprot,777 windowmaskerSdust,46 xenoMrna,460 xenoRefGene,217 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainMm10,936 chainMm10,973 chainMm10,1034 chainMm10,1054 chainMm10,1102 chainNetMm10,939 chainNetMm10,976 chainNetMm10,1037 chainNetMm10,1057 chainNetMm10,1105 netMm10,936 netMm10,973 netMm10,1034 netMm10,1054 netMm10,1102 minexonintronprob augustusGene,135 minimum chainMm10,684 chainNetMm10,687 netMm10,684 minmeanexonintronprob augustusGene,137 minmei chainMm10,928 chainNetMm10,931 netMm10,928 mismatch rmsk,218 misplacements uniprot,853 mitochondrial gold,146 mj xenoRefGene,337 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,309 chainNetMm10,8 chainNetMm10,72 chainNetMm10,312 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,309 mode chainMm10,387 chainNetMm10,390 gold,69 mrna,44 mrna,74 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netMm10,387 rmsk,142 xenoMrna,48 xenoMrna,148 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainMm10,242 chainNetMm10,245 netMm10,242 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 chainMm10,163 chainMm10,224 chainNetMm10,166 chainNetMm10,227 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 genscan,50 genscan,125 genscan,163 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 nestedRepeats,211 nestedRepeats,300 netMm10,163 netMm10,224 rmsk,323 simpleRepeat,57 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoMrna,53 xenoMrna,195 xenoMrna,302 xenoMrna,423 xenoMrna,449 xenoRefGene,176 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,97 chainMm10,150 chainMm10,270 chainMm10,297 chainMm10,578 chainMm10,627 chainMm10,1067 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,100 chainNetMm10,153 chainNetMm10,273 chainNetMm10,300 chainNetMm10,581 chainNetMm10,630 chainNetMm10,1070 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netMm10,1 netMm10,3 netMm10,65 netMm10,97 netMm10,150 netMm10,270 netMm10,297 netMm10,578 netMm10,627 netMm10,1067 uniprot,521 uniprot,535 mrna mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 xenoMrna,8 xenoMrna,22 xenoMrna,203 xenoMrna,476 xenoMrna,517 xenoMrna,524 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 xenoMrna,2 xenoMrna,5 xenoMrna,213 xenoMrna,318 xenoMrna,333 xenoMrna,374 xenoMrna,392 xenoMrna,417 xenoMrna,462 much chainMm10,885 chainMm10,902 chainNetMm10,888 chainNetMm10,905 nestedRepeats,210 netMm10,885 netMm10,902 mujica uniprot,1967 multiple chainMm10,195 chainNetMm10,198 mrna,206 mrna,406 netMm10,195 uniprot,58 uniprot,1067 uniprot,1095 xenoMrna,280 xenoMrna,479 xenoRefGene,245 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainMm10,184 chainNetMm10,187 netMm10,184 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 name chainMm10,369 chainNetMm10,372 mrna,147 nestedRepeats,136 netMm10,369 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoMrna,221 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainMm10,246 chainNetMm10,249 netMm10,246 ucscToINSDC,21 ucscToINSDC,24 xenoRefGene,131 native augustusGene,295 natl chainMm10,1072 chainNetMm10,1075 netMm10,1072 natural chainMm10,823 chainNetMm10,826 netMm10,823 nbci uniprot,822 nbsp chainMm10,674 chainNetMm10,677 netMm10,674 nc_002073 gold,149 ncbi ucscToINSDC,39 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 necessary chainMm10,807 chainNetMm10,810 netMm10,807 nematodes augustusGene,211 net chainMm10,34 chainMm10,262 chainMm10,265 chainMm10,382 chainMm10,761 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,265 chainNetMm10,268 chainNetMm10,385 chainNetMm10,764 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netMm10,2 netMm10,9 netMm10,34 netMm10,262 netMm10,265 netMm10,382 netMm10,761 netclass chainMm10,877 chainMm10,1000 chainNetMm10,880 chainNetMm10,1003 netMm10,877 netMm10,1000 nets chainMm10,987 chainNetMm10,990 netMm10,987 netsyntenic chainMm10,845 chainMm10,998 chainNetMm10,848 chainNetMm10,1001 netMm10,845 netMm10,998 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainMm10,348 chainMm10,377 chainNetMm10,351 chainNetMm10,380 netMm10,348 netMm10,377 nig augustusGene,270 no microsat,73 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainMm10,49 chainNetMm10,52 netMm10,49 non-coding augustusGene,75 xenoRefGene,193 non-painted xenoMrna,3 xenoRefGene,3 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 nonsyn chainMm10,554 chainNetMm10,557 netMm10,554 nor xenoMrna,126 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainMm10,812 chainNetMm10,815 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 gap,109 mrna,298 netMm10,812 rmsk,113 rmsk,313 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 xenoMrna,122 xenoMrna,372 note nestedRepeats,264 uniprot,695 novo augustusGene,304 now uniprot,1680 ns chainMm10,892 chainNetMm10,895 netMm10,892 nuclear rmsk,155 rmsk,163 nucleic microsat,125 mrna,479 mrna,504 simpleRepeat,85 uniprot,1997 xenoMrna,553 xenoMrna,578 xenoRefGene,349 xenoRefGene,382 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 o xenoRefGene,331 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainMm10,17 chainMm10,64 chainMm10,182 chainMm10,202 chainMm10,255 chainMm10,277 chainMm10,360 chainMm10,370 chainMm10,488 chainMm10,508 chainMm10,643 chainMm10,648 chainMm10,666 chainMm10,686 chainMm10,886 chainMm10,961 chainMm10,983 chainMm10,1007 chainMm10,1021 chainNetMm10,20 chainNetMm10,67 chainNetMm10,185 chainNetMm10,205 chainNetMm10,258 chainNetMm10,280 chainNetMm10,363 chainNetMm10,373 chainNetMm10,491 chainNetMm10,511 chainNetMm10,646 chainNetMm10,651 chainNetMm10,669 chainNetMm10,689 chainNetMm10,889 chainNetMm10,964 chainNetMm10,986 chainNetMm10,1010 chainNetMm10,1024 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 gap,20 gap,46 gap,52 gap,82 gap,89 gap,101 gap,107 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,24 gold,89 gold,114 gold,144 gold,151 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netMm10,17 netMm10,64 netMm10,182 netMm10,202 netMm10,255 netMm10,277 netMm10,360 netMm10,370 netMm10,488 netMm10,508 netMm10,643 netMm10,648 netMm10,666 netMm10,686 netMm10,886 netMm10,961 netMm10,983 netMm10,1007 netMm10,1021 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoMrna,18 xenoMrna,58 xenoMrna,76 xenoMrna,98 xenoMrna,108 xenoMrna,157 xenoMrna,196 xenoMrna,222 xenoMrna,233 xenoMrna,269 xenoMrna,338 xenoMrna,441 xenoMrna,500 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainMm10,339 chainMm10,345 chainNetMm10,342 chainNetMm10,348 netMm10,339 netMm10,345 xenoRefGene,134 offers genscan,79 often chainMm10,213 chainMm10,225 chainNetMm10,216 chainNetMm10,228 netMm10,213 netMm10,225 older uniprot,1560 uniprot,1647 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainMm10,327 chainMm10,353 chainMm10,456 chainMm10,470 chainMm10,520 chainMm10,525 chainMm10,540 chainMm10,773 chainNetMm10,330 chainNetMm10,356 chainNetMm10,459 chainNetMm10,473 chainNetMm10,523 chainNetMm10,528 chainNetMm10,543 chainNetMm10,776 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 gap,49 genscan,27 genscan,52 gold,63 mrna,178 mrna,227 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netMm10,327 netMm10,353 netMm10,456 netMm10,470 netMm10,520 netMm10,525 netMm10,540 netMm10,773 rmsk,74 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoMrna,252 xenoMrna,301 xenoRefGene,345 once mrna,212 uniprot,647 xenoMrna,286 one augustusGene,169 chainMm10,190 chainMm10,361 chainMm10,507 chainMm10,800 chainMm10,896 chainNetMm10,193 chainNetMm10,364 chainNetMm10,510 chainNetMm10,803 chainNetMm10,899 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 mrna,119 mrna,230 mrna,263 netMm10,190 netMm10,361 netMm10,507 netMm10,800 netMm10,896 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 xenoMrna,193 xenoMrna,304 xenoMrna,337 ones uniprot,1041 ongoing uniprot,1569 only chainMm10,357 chainNetMm10,360 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 netMm10,357 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoMrna,177 xenoMrna,317 xenoMrna,390 xenoMrna,490 xenoRefGene,210 xenoRefGene,256 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainMm10,552 chainNetMm10,555 netMm10,552 option augustusGene,167 augustusGene,187 genscan,94 mrna,353 xenoMrna,427 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options gc5BaseBw,70 genscan,85 mrna,384 xenoMrna,458 or chainMm10,30 chainMm10,129 chainMm10,152 chainMm10,185 chainMm10,491 chainMm10,868 chainMm10,897 chainNetMm10,33 chainNetMm10,132 chainNetMm10,155 chainNetMm10,188 chainNetMm10,494 chainNetMm10,871 chainNetMm10,900 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 mrna,120 mrna,255 mrna,274 mrna,283 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netMm10,30 netMm10,129 netMm10,152 netMm10,185 netMm10,491 netMm10,868 netMm10,897 rmsk,251 rmsk,280 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoMrna,94 xenoMrna,194 xenoMrna,329 xenoMrna,348 xenoMrna,357 xenoRefGene,132 order gap,43 gold,51 gold,111 uniprot,872 organ mrna,144 mrna,150 xenoMrna,218 xenoMrna,224 organism chainMm10,336 chainMm10,366 chainNetMm10,339 chainNetMm10,369 netMm10,336 netMm10,366 organisms chainMm10,913 chainNetMm10,916 nestedRepeats,295 netMm10,913 rmsk,302 uniprot,998 xenoMrna,26 xenoRefGene,21 organizes chainMm10,621 chainNetMm10,624 netMm10,621 orientation chainMm10,553 chainNetMm10,556 cytoBandIdeo,6 gap,45 gold,52 gold,113 netMm10,553 xenoMrna,75 xenoMrna,97 orientations xenoMrna,107 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologs chainMm10,290 chainNetMm10,293 netMm10,290 ostell mrna,474 mrna,498 xenoMrna,548 xenoMrna,572 other augustusGene,208 chainMm10,24 chainMm10,418 chainMm10,511 chainNetMm10,27 chainNetMm10,421 chainNetMm10,514 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 gap,105 nestedRepeats,376 netMm10,24 netMm10,418 netMm10,511 rmsk,195 rmsk,399 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoMrna,1 xenoMrna,27 xenoRefGene,1 xenoRefGene,22 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 genscan,58 rmsk,124 rmsk,129 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainMm10,642 chainNetMm10,645 netMm10,642 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside uniprot,558 over chainMm10,198 chainMm10,657 chainNetMm10,201 chainNetMm10,660 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netMm10,198 netMm10,657 uniprot,522 uniprot,536 overlapping chainMm10,114 chainMm10,178 chainNetMm10,117 chainNetMm10,181 gap,102 netMm10,114 netMm10,178 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainMm10,1041 chainNetMm10,1044 netMm10,1041 pack chainMm10,235 chainNetMm10,238 nestedRepeats,116 netMm10,235 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 genscan,78 genscan,123 mrna,59 mrna,364 mrna,385 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoMrna,133 xenoMrna,438 xenoMrna,459 xenoRefGene,100 xenoRefGene,191 pages chainMm10,778 chainNetMm10,781 netMm10,778 painted chainMm10,72 chainMm10,99 chainMm10,157 chainMm10,204 chainMm10,271 chainMm10,279 chainMm10,579 chainMm10,632 chainNetMm10,75 chainNetMm10,102 chainNetMm10,160 chainNetMm10,207 chainNetMm10,274 chainNetMm10,282 chainNetMm10,582 chainNetMm10,635 gold,18 gold,26 mrna,1 mrna,4 mrna,19 mrna,388 netMm10,72 netMm10,99 netMm10,157 netMm10,204 netMm10,271 netMm10,279 netMm10,579 netMm10,632 xenoMrna,29 xenoMrna,467 xenoRefGene,24 xenoRefGene,224 paired-end gold,64 pairwise chainMm10,1019 chainMm10,1037 chainNetMm10,1022 chainNetMm10,1040 netMm10,1019 netMm10,1037 paralogs chainMm10,228 chainNetMm10,231 netMm10,228 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 part chainMm10,276 chainNetMm10,279 netMm10,276 particular augustusGene,234 chainMm10,200 chainNetMm10,203 netMm10,200 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainMm10,39 chainMm10,50 chainNetMm10,42 chainNetMm10,53 netMm10,39 netMm10,50 xenoMrna,70 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainMm10,924 chainMm10,1027 chainNetMm10,927 chainNetMm10,1030 netMm10,924 netMm10,1027 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainMm10,1024 chainNetMm10,1027 netMm10,1024 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 place chainMm10,797 chainNetMm10,800 netMm10,797 placed chainMm10,839 chainNetMm10,842 netMm10,839 places mrna,407 xenoMrna,480 xenoRefGene,246 please uniprot,685 uniprot,1439 uniprot,1826 pmc chainMm10,1086 chainMm10,1117 chainNetMm10,1089 chainNetMm10,1120 microsat,136 mrna,490 mrna,516 mrna,534 netMm10,1086 netMm10,1117 simpleRepeat,96 uniprot,2008 xenoMrna,564 xenoMrna,590 xenoMrna,608 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,535 xenoMrna,609 xenoRefGene,319 pmc208784 chainMm10,1087 chainNetMm10,1090 netMm10,1087 pmc308779 mrna,517 xenoMrna,591 pmc3245120 uniprot,2009 pmc3531190 mrna,491 xenoMrna,565 pmc3965018 xenoRefGene,361 pmc430961 chainMm10,1118 chainNetMm10,1121 netMm10,1118 pmc539979 xenoRefGene,395 pmid augustusGene,314 augustusGene,339 chainMm10,1046 chainMm10,1084 chainMm10,1115 chainNetMm10,1049 chainNetMm10,1087 chainNetMm10,1118 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 genscan,229 microsat,134 mrna,488 mrna,514 mrna,532 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netMm10,1046 netMm10,1084 netMm10,1115 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoMrna,562 xenoMrna,588 xenoMrna,606 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainMm10,713 chainNetMm10,716 netMm10,713 uniprot,610 positions uniprot,1495 possible chainMm10,412 chainNetMm10,415 gold,38 netMm10,412 uniprot,601 possibly chainMm10,289 chainNetMm10,292 netMm10,289 simpleRepeat,18 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 uniprot,48 uniprot,193 xenoMrna,114 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared gc5BaseBw,80 ucscToINSDC,49 uniprot,712 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous uniprot,1654 previously chainMm10,917 chainNetMm10,920 netMm10,917 primary unipStruct,4 uniprot,360 principal gap,80 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainMm10,1071 chainNetMm10,1074 netMm10,1071 procedure uniprot,990 process chainMm10,821 chainNetMm10,824 gap,30 netMm10,821 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainMm10,216 chainNetMm10,219 netMm10,216 produced mrna,446 xenoMrna,83 xenoMrna,520 xenoRefGene,284 products unipChain,5 program augustusGene,21 augustusGene,257 chainMm10,612 chainMm10,653 chainMm10,791 chainMm10,844 chainMm10,876 chainMm10,952 chainMm10,955 chainNetMm10,615 chainNetMm10,656 chainNetMm10,794 chainNetMm10,847 chainNetMm10,879 chainNetMm10,955 chainNetMm10,958 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 nestedRepeats,30 netMm10,612 netMm10,653 netMm10,791 netMm10,844 netMm10,876 netMm10,952 netMm10,955 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 uniprot,1529 programs chainMm10,1001 chainNetMm10,1004 netMm10,1001 uniprot,1877 project xenoRefGene,301 projected uniprot,800 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 prot.bed uniprot,1931 uniprot,1933 protein unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 xenoMrna,82 xenoMrna,115 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 provide uniprot,1860 provided uniprot,817 provides uniprot,489 providing augustusGene,254 genscan,175 nestedRepeats,312 rmsk,335 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudogenes chainMm10,217 chainMm10,231 chainNetMm10,220 chainNetMm10,234 netMm10,217 netMm10,231 uniprot,1184 psl mrna,38 uniprot,1479 xenoMrna,42 pslmap uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 mrna,457 uniprot,709 xenoMrna,531 publications uniprot,38 publicly nestedRepeats,275 pull-down xenoRefGene,173 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainMm10,725 chainNetMm10,728 netMm10,725 quality mrna,56 xenoMrna,60 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 query rmsk,47 rmsk,61 uniprot,1484 xenoMrna,78 questions uniprot,1834 quickly mrna,341 xenoMrna,415 xenoRefGene,152 quite simpleRepeat,45 quot chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,103 chainMm10,105 chainMm10,234 chainMm10,236 chainMm10,238 chainMm10,240 chainMm10,344 chainMm10,346 chainMm10,687 chainMm10,689 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,106 chainNetMm10,108 chainNetMm10,237 chainNetMm10,239 chainNetMm10,241 chainNetMm10,243 chainNetMm10,347 chainNetMm10,349 chainNetMm10,690 chainNetMm10,692 gc5BaseBw,58 gc5BaseBw,62 gold,47 gold,49 gold,154 gold,156 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,103 netMm10,105 netMm10,234 netMm10,236 netMm10,238 netMm10,240 netMm10,344 netMm10,346 netMm10,687 netMm10,689 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 xenoMrna,261 xenoMrna,263 xenoMrna,312 xenoMrna,314 xenoMrna,328 xenoMrna,330 xenoMrna,364 xenoMrna,366 xenoMrna,381 xenoMrna,383 r augustusGene,291 chainMm10,1051 chainMm10,1097 chainNetMm10,1054 chainNetMm10,1100 nestedRepeats,327 netMm10,1051 netMm10,1097 rmsk,350 windowmaskerSdust,99 r.s chainMm10,1016 chainNetMm10,1019 netMm10,1016 random augustusGene,119 raney uniprot,1960 range nestedRepeats,227 nestedRepeats,236 uniprot,1809 ranked chainMm10,788 chainNetMm10,791 netMm10,788 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw uniprot,1708 rc chainMm10,1099 chainNetMm10,1102 netMm10,1099 rmsk,200 read gold,65 reads gap,104 gold,31 rearrangement chainMm10,295 chainMm10,498 chainMm10,1064 chainNetMm10,298 chainNetMm10,501 chainNetMm10,1067 netMm10,295 netMm10,498 netMm10,1064 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 record uniprot,496 xenoRefGene,67 refer genscan,144 uniprot,1827 reference uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainMm10,1014 chainNetMm10,1017 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 genscan,152 genscan,179 microsat,113 mrna,463 nestedRepeats,66 nestedRepeats,323 netMm10,1014 rmsk,102 rmsk,346 simpleRepeat,73 uniprot,1984 windowmaskerSdust,89 xenoMrna,537 xenoRefGene,302 reflects rmsk,213 refseq uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 regeneron uniprot,1968 region chainMm10,201 chainMm10,401 chainNetMm10,204 chainNetMm10,404 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netMm10,201 netMm10,401 uniprot,312 regions augustusGene,76 chainMm10,16 chainMm10,136 chainMm10,288 chainNetMm10,19 chainNetMm10,139 chainNetMm10,291 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netMm10,16 netMm10,136 netMm10,288 simpleRepeat,39 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 uniprot,551 relationship chainMm10,854 chainNetMm10,857 netMm10,854 relative chainMm10,870 chainNetMm10,873 gap,42 gold,110 netMm10,870 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,106 uniprot,681 xenoMrna,180 remain uniprot,1189 remaining chainMm10,693 chainNetMm10,696 netMm10,693 removed chainMm10,583 chainNetMm10,586 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netMm10,583 rmsk,279 uniprot,597 uniprot,1150 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainMm10,951 chainNetMm10,954 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netMm10,951 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainMm10,943 chainNetMm10,946 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netMm10,943 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 rmsk,374 uniprot,1400 represent chainMm10,134 chainMm10,162 chainMm10,448 chainMm10,453 chainNetMm10,137 chainNetMm10,165 chainNetMm10,451 chainNetMm10,456 netMm10,134 netMm10,162 netMm10,448 netMm10,453 represented gap,33 rmsk,49 representing gap,72 reproducibility uniprot,1645 res chainMm10,1109 chainNetMm10,1112 microsat,127 mrna,481 mrna,506 mrna,526 netMm10,1109 simpleRepeat,87 uniprot,1999 xenoMrna,555 xenoMrna,580 xenoMrna,600 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research nestedRepeats,54 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 result chainMm10,175 chainNetMm10,178 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netMm10,175 uniprot,798 uniprot,1065 uniprot,1170 resulting chainMm10,602 chainNetMm10,605 netMm10,602 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review xenoRefGene,64 reviewed xenoRefGene,74 riestra uniprot,1972 rna rmsk,186 rmsk,189 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainMm10,991 chainNetMm10,994 nestedRepeats,307 netMm10,991 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainMm10,940 chainNetMm10,943 netMm10,940 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainMm10,656 chainNetMm10,659 netMm10,656 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainMm10,1059 chainMm10,1076 chainMm10,1089 chainNetMm10,1062 chainNetMm10,1079 chainNetMm10,1092 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netMm10,1059 netMm10,1076 netMm10,1089 rmsk,18 rmsk,293 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same chainMm10,527 chainMm10,542 chainNetMm10,530 chainNetMm10,545 nestedRepeats,143 netMm10,527 netMm10,542 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 xenoMrna,124 xenoMrna,129 sample augustusGene,133 sampling augustusGene,129 santa chainMm10,964 chainMm10,1009 chainNetMm10,967 chainNetMm10,1012 netMm10,964 netMm10,1009 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,476 xenoMrna,550 scaffold gold,60 gold,81 gold,119 scaffolds gold,43 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainMm10,931 chainMm10,1088 chainNetMm10,934 chainNetMm10,1091 netMm10,931 netMm10,1088 sci chainMm10,1074 chainNetMm10,1077 netMm10,1074 science genscan,203 scientific uniprot,37 scientists mrna,461 xenoMrna,535 xenoRefGene,293 score chainMm10,685 chainNetMm10,688 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netMm10,685 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainMm10,78 chainMm10,88 chainMm10,664 chainMm10,681 chainMm10,1036 chainNetMm10,81 chainNetMm10,91 chainNetMm10,667 chainNetMm10,684 chainNetMm10,1039 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netMm10,78 netMm10,88 netMm10,664 netMm10,681 netMm10,1036 scott chainMm10,930 chainNetMm10,933 netMm10,930 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 second xenoMrna,93 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 nestedRepeats,67 rmsk,103 uniprot,897 sections chainMm10,811 chainNetMm10,814 netMm10,811 see augustusGene,42 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 rmsk,319 rmsk,393 simpleRepeat,63 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 xenoRefGene,162 selected mrna,242 mrna,258 mrna,311 uniprot,986 xenoMrna,316 xenoMrna,332 xenoMrna,385 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sep chainMm10,1079 chainNetMm10,1082 nestedRepeats,356 netMm10,1079 rmsk,379 separated mrna,213 xenoMrna,287 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 chainMm10,169 chainMm10,298 chainMm10,1039 chainNetMm10,172 chainNetMm10,301 chainNetMm10,1042 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,103 gold,147 mrna,347 mrna,438 mrna,451 mrna,458 netMm10,169 netMm10,298 netMm10,1039 rmsk,48 rmsk,62 ucscToINSDC,7 ucscToINSDC,29 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoMrna,79 xenoMrna,103 xenoMrna,111 xenoMrna,421 xenoMrna,512 xenoMrna,525 xenoMrna,532 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequenced windowmaskerSdust,104 sequences gap,106 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoMrna,116 xenoRefGene,32 xenoRefGene,348 sequencing chainMm10,893 chainNetMm10,896 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 gold,21 netMm10,893 ucscToINSDC,12 server uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 set gap,100 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 several mrna,365 xenoMrna,439 shade nestedRepeats,194 shaded mrna,51 nestedRepeats,182 xenoMrna,55 shades nestedRepeats,202 shading nestedRepeats,240 rmsk,208 rmsk,239 xenoRefGene,59 short rmsk,153 uniprot,460 uniprot,978 shotgun gold,30 gold,159 should mrna,278 xenoMrna,352 show uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown chainMm10,41 chainMm10,54 chainNetMm10,44 chainNetMm10,57 gold,102 microsat,48 mrna,96 netMm10,41 netMm10,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 xenoMrna,170 shows augustusGene,15 augustusGene,108 chainMm10,15 chainMm10,62 chainMm10,267 chainNetMm10,18 chainNetMm10,65 chainNetMm10,270 gc5BaseBw,16 genscan,13 gold,11 mrna,16 nestedRepeats,17 nestedRepeats,81 netMm10,15 netMm10,62 netMm10,267 uniprot,14 uniprot,484 xenoRefGene,14 side gap,51 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainMm10,101 chainNetMm10,104 netMm10,101 since chainMm10,576 chainNetMm10,579 netMm10,576 uniprot,1383 sine rmsk,157 single chainMm10,128 chainMm10,137 chainMm10,626 chainMm10,631 chainNetMm10,131 chainNetMm10,140 chainNetMm10,629 chainNetMm10,634 mrna,402 nestedRepeats,178 netMm10,128 netMm10,137 netMm10,626 netMm10,631 uniprot,141 xenoMrna,475 xenoRefGene,241 single-lined chainMm10,210 chainNetMm10,213 netMm10,210 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 uniprot,342 uniprot,354 uniprot,578 uniprot,585 sizes gold,55 sm xenoRefGene,325 smallsize chainMm10,711 chainNetMm10,714 netMm10,711 smit chainMm10,948 chainMm10,1092 chainNetMm10,951 chainNetMm10,1095 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netMm10,948 netMm10,1092 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainMm10,440 chainNetMm10,443 netMm10,440 uniprot,1135 uniprot,1430 soft-masked rmsk,305 software nestedRepeats,255 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,104 nestedRepeats,207 rmsk,105 rmsk,268 uniprot,318 xenoMrna,178 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainMm10,780 chainNetMm10,783 netMm10,780 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 space mrna,216 uniprot,1990 xenoMrna,290 spaces gold,100 span chainMm10,399 chainNetMm10,402 netMm10,399 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainMm10,118 chainMm10,172 chainMm10,191 chainMm10,899 chainNetMm10,121 chainNetMm10,175 chainNetMm10,194 chainNetMm10,902 netMm10,118 netMm10,172 netMm10,191 netMm10,899 species-specific augustusGene,156 specific mrna,143 simpleRepeat,53 xenoMrna,217 splice augustusGene,53 genscan,156 uniprot,144 splicing augustusGene,123 genscan,33 genscan,186 split chainMm10,581 chainNetMm10,584 netMm10,581 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srprna rmsk,194 staff uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 uniprot,125 uniprot,209 uniprot,1821 state chainMm10,925 chainMm10,1028 chainNetMm10,928 chainNetMm10,1031 netMm10,925 netMm10,1028 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 uniprot,1825 stefanie augustusGene,267 step uniprot,901 uniprot,1155 uniprot,1330 storage chainMm10,982 chainNetMm10,985 netMm10,982 stored uniprot,1733 strand chainMm10,250 chainNetMm10,253 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netMm10,250 xenoMrna,62 strands uniprot,365 strategy uniprot,1120 uniprot,1193 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainMm10,293 chainNetMm10,296 netMm10,293 subcellular uniprot,553 submitted mrna,453 xenoMrna,527 submodel augustusGene,331 subsections chainMm10,646 chainNetMm10,649 netMm10,646 subset microsat,54 mrna,82 xenoMrna,156 substantial chainMm10,168 chainNetMm10,171 netMm10,168 subtrack uniprot,411 subtracks chainMm10,29 chainMm10,36 chainNetMm10,32 chainNetMm10,39 netMm10,29 netMm10,36 uniprot,59 uniprot,72 uniprot,520 uniprot,548 such chainMm10,860 chainNetMm10,863 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netMm10,860 uniprot,306 suffix uniprot,1255 suitable uniprot,1868 supercontigs gold,48 suppl augustusGene,336 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainMm10,1042 chainNetMm10,1045 netMm10,1042 syn chainMm10,523 chainNetMm10,526 netMm10,523 syntenic chainMm10,287 chainMm10,867 chainNetMm10,290 chainNetMm10,870 netMm10,287 netMm10,867 syntenically augustusGene,297 synteny chainMm10,32 chainNetMm10,35 netMm10,32 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainMm10,79 chainNetMm10,82 netMm10,79 uniprot,1353 uniprot,1784 systems chainMm10,89 chainNetMm10,92 netMm10,89 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 xenoRefGene,365 t-100-25-9091 chainMm10,679 chainNetMm10,682 netMm10,679 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 mrna,168 mrna,171 mrna,190 uniprot,1720 windowmaskerSdust,85 xenoMrna,242 xenoMrna,245 xenoMrna,264 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 uniprot,1301 tablesize chainMm10,709 chainNetMm10,712 netMm10,709 taken xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task mrna,110 xenoMrna,184 tatusova xenoRefGene,364 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,117 xenoMrna,191 terminal rmsk,167 terms mrna,161 mrna,207 xenoMrna,235 xenoMrna,281 text mrna,124 mrna,164 mrna,204 uniprot,1763 xenoMrna,198 xenoMrna,238 xenoMrna,278 tgap chainMm10,737 chainNetMm10,740 netMm10,737 than chainMm10,84 chainMm10,512 chainNetMm10,87 chainNetMm10,515 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,229 nestedRepeats,213 nestedRepeats,271 netMm10,84 netMm10,512 xenoMrna,28 xenoMrna,303 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that chainMm10,20 chainMm10,45 chainMm10,80 chainMm10,141 chainMm10,166 chainMm10,371 chainMm10,398 chainMm10,420 chainMm10,572 chainMm10,830 chainMm10,841 chainNetMm10,23 chainNetMm10,48 chainNetMm10,83 chainNetMm10,144 chainNetMm10,169 chainNetMm10,374 chainNetMm10,401 chainNetMm10,423 chainNetMm10,575 chainNetMm10,833 chainNetMm10,844 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,75 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 nestedRepeats,265 nestedRepeats,273 netMm10,20 netMm10,45 netMm10,80 netMm10,141 netMm10,166 netMm10,371 netMm10,398 netMm10,420 netMm10,572 netMm10,830 netMm10,841 rmsk,42 rmsk,259 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoMrna,51 xenoMrna,140 xenoMrna,247 xenoMrna,271 xenoMrna,319 xenoMrna,334 xenoMrna,351 xenoMrna,375 xenoMrna,393 xenoMrna,410 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,119 chainMm10,132 chainMm10,149 chainMm10,156 chainMm10,203 chainMm10,207 chainMm10,233 chainMm10,243 chainMm10,248 chainMm10,256 chainMm10,264 chainMm10,268 chainMm10,278 chainMm10,296 chainMm10,305 chainMm10,319 chainMm10,334 chainMm10,340 chainMm10,343 chainMm10,358 chainMm10,364 chainMm10,368 chainMm10,388 chainMm10,394 chainMm10,408 chainMm10,426 chainMm10,443 chainMm10,446 chainMm10,451 chainMm10,464 chainMm10,477 chainMm10,479 chainMm10,486 chainMm10,489 chainMm10,496 chainMm10,502 chainMm10,515 chainMm10,526 chainMm10,530 chainMm10,533 chainMm10,541 chainMm10,545 chainMm10,551 chainMm10,562 chainMm10,565 chainMm10,577 chainMm10,585 chainMm10,587 chainMm10,595 chainMm10,601 chainMm10,610 chainMm10,613 chainMm10,644 chainMm10,649 chainMm10,658 chainMm10,662 chainMm10,669 chainMm10,692 chainMm10,700 chainMm10,770 chainMm10,774 chainMm10,782 chainMm10,786 chainMm10,790 chainMm10,798 chainMm10,843 chainMm10,853 chainMm10,872 chainMm10,875 chainMm10,887 chainMm10,911 chainMm10,953 chainMm10,959 chainMm10,977 chainMm10,984 chainMm10,996 chainMm10,1005 chainMm10,1026 chainMm10,1066 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,122 chainNetMm10,135 chainNetMm10,152 chainNetMm10,159 chainNetMm10,206 chainNetMm10,210 chainNetMm10,236 chainNetMm10,246 chainNetMm10,251 chainNetMm10,259 chainNetMm10,267 chainNetMm10,271 chainNetMm10,281 chainNetMm10,299 chainNetMm10,308 chainNetMm10,322 chainNetMm10,337 chainNetMm10,343 chainNetMm10,346 chainNetMm10,361 chainNetMm10,367 chainNetMm10,371 chainNetMm10,391 chainNetMm10,397 chainNetMm10,411 chainNetMm10,429 chainNetMm10,446 chainNetMm10,449 chainNetMm10,454 chainNetMm10,467 chainNetMm10,480 chainNetMm10,482 chainNetMm10,489 chainNetMm10,492 chainNetMm10,499 chainNetMm10,505 chainNetMm10,518 chainNetMm10,529 chainNetMm10,533 chainNetMm10,536 chainNetMm10,544 chainNetMm10,548 chainNetMm10,554 chainNetMm10,565 chainNetMm10,568 chainNetMm10,580 chainNetMm10,588 chainNetMm10,590 chainNetMm10,598 chainNetMm10,604 chainNetMm10,613 chainNetMm10,616 chainNetMm10,647 chainNetMm10,652 chainNetMm10,661 chainNetMm10,665 chainNetMm10,672 chainNetMm10,695 chainNetMm10,703 chainNetMm10,773 chainNetMm10,777 chainNetMm10,785 chainNetMm10,789 chainNetMm10,793 chainNetMm10,801 chainNetMm10,846 chainNetMm10,856 chainNetMm10,875 chainNetMm10,878 chainNetMm10,890 chainNetMm10,914 chainNetMm10,956 chainNetMm10,962 chainNetMm10,980 chainNetMm10,987 chainNetMm10,999 chainNetMm10,1008 chainNetMm10,1029 chainNetMm10,1069 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 gap,13 gap,18 gap,28 gap,41 gap,47 gap,53 gap,69 gap,73 gap,78 gap,87 gap,112 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,25 gold,50 gold,73 gold,78 gold,87 gold,104 gold,109 gold,115 gold,129 gold,134 gold,142 gold,145 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,119 netMm10,132 netMm10,149 netMm10,156 netMm10,203 netMm10,207 netMm10,233 netMm10,243 netMm10,248 netMm10,256 netMm10,264 netMm10,268 netMm10,278 netMm10,296 netMm10,305 netMm10,319 netMm10,334 netMm10,340 netMm10,343 netMm10,358 netMm10,364 netMm10,368 netMm10,388 netMm10,394 netMm10,408 netMm10,426 netMm10,443 netMm10,446 netMm10,451 netMm10,464 netMm10,477 netMm10,479 netMm10,486 netMm10,489 netMm10,496 netMm10,502 netMm10,515 netMm10,526 netMm10,530 netMm10,533 netMm10,541 netMm10,545 netMm10,551 netMm10,562 netMm10,565 netMm10,577 netMm10,585 netMm10,587 netMm10,595 netMm10,601 netMm10,610 netMm10,613 netMm10,644 netMm10,649 netMm10,658 netMm10,662 netMm10,669 netMm10,692 netMm10,700 netMm10,770 netMm10,774 netMm10,782 netMm10,786 netMm10,790 netMm10,798 netMm10,843 netMm10,853 netMm10,872 netMm10,875 netMm10,887 netMm10,911 netMm10,953 netMm10,959 netMm10,977 netMm10,984 netMm10,996 netMm10,1005 netMm10,1026 netMm10,1066 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoMrna,38 xenoMrna,49 xenoMrna,61 xenoMrna,71 xenoMrna,74 xenoMrna,77 xenoMrna,84 xenoMrna,92 xenoMrna,96 xenoMrna,99 xenoMrna,105 xenoMrna,123 xenoMrna,128 xenoMrna,131 xenoMrna,146 xenoMrna,150 xenoMrna,160 xenoMrna,172 xenoMrna,182 xenoMrna,187 xenoMrna,197 xenoMrna,202 xenoMrna,209 xenoMrna,220 xenoMrna,223 xenoMrna,226 xenoMrna,231 xenoMrna,241 xenoMrna,244 xenoMrna,250 xenoMrna,260 xenoMrna,267 xenoMrna,276 xenoMrna,297 xenoMrna,307 xenoMrna,339 xenoMrna,346 xenoMrna,360 xenoMrna,369 xenoMrna,377 xenoMrna,386 xenoMrna,395 xenoMrna,412 xenoMrna,419 xenoMrna,430 xenoMrna,453 xenoMrna,461 xenoMrna,466 xenoMrna,481 xenoMrna,484 xenoMrna,501 xenoMrna,510 xenoMrna,516 xenoMrna,529 xenoMrna,595 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainMm10,805 chainNetMm10,808 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netMm10,805 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainMm10,655 chainMm10,794 chainMm10,879 chainNetMm10,658 chainNetMm10,797 chainNetMm10,882 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netMm10,655 netMm10,794 netMm10,879 uniprot,1083 uniprot,1516 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 uniprot,705 uniprot,1092 xenoMrna,117 therefore gold,123 uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainMm10,52 chainMm10,102 chainMm10,413 chainMm10,667 chainNetMm10,55 chainNetMm10,105 chainNetMm10,416 chainNetMm10,670 gap,15 microsat,24 nestedRepeats,262 nestedRepeats,266 netMm10,52 netMm10,102 netMm10,413 netMm10,667 rmsk,235 simpleRepeat,33 uniprot,99 uniprot,130 uniprot,1160 thesis chainMm10,1025 chainNetMm10,1028 netMm10,1025 they chainMm10,330 chainNetMm10,333 netMm10,330 uniprot,179 thibaud-nissen xenoRefGene,326 thick chainMm10,43 chainNetMm10,46 netMm10,43 this augustusGene,13 augustusGene,106 augustusGene,224 chainMm10,13 chainMm10,173 chainMm10,301 chainMm10,400 chainMm10,698 chainMm10,820 chainNetMm10,16 chainNetMm10,176 chainNetMm10,304 chainNetMm10,403 chainNetMm10,701 chainNetMm10,823 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 gap,8 gap,38 gap,75 gap,94 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,70 gold,139 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netMm10,13 netMm10,173 netMm10,301 netMm10,400 netMm10,698 netMm10,820 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 ucscToINSDC,14 ucscToINSDC,46 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoMrna,12 xenoMrna,35 xenoMrna,65 xenoMrna,135 xenoMrna,162 xenoMrna,398 xenoMrna,426 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those microsat,62 mrna,317 nestedRepeats,272 uniprot,729 xenoMrna,391 xenoMrna,491 xenoRefGene,229 thousands chainMm10,254 chainNetMm10,257 netMm10,254 three uniprot,1227 three-step uniprot,989 through gap,68 nestedRepeats,97 rmsk,309 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time chainMm10,803 chainNetMm10,806 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netMm10,803 tissue mrna,153 mrna,188 mrna,203 xenoMrna,227 xenoMrna,262 xenoMrna,277 tissues mrna,196 xenoMrna,270 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainMm10,23 chainMm10,70 chainMm10,145 chainMm10,215 chainMm10,227 chainMm10,321 chainMm10,332 chainMm10,337 chainMm10,349 chainMm10,355 chainMm10,378 chainMm10,459 chainMm10,473 chainMm10,557 chainMm10,660 chainMm10,796 chainMm10,808 chainMm10,848 chainMm10,871 chainMm10,881 chainNetMm10,26 chainNetMm10,73 chainNetMm10,148 chainNetMm10,218 chainNetMm10,230 chainNetMm10,324 chainNetMm10,335 chainNetMm10,340 chainNetMm10,352 chainNetMm10,358 chainNetMm10,381 chainNetMm10,462 chainNetMm10,476 chainNetMm10,560 chainNetMm10,663 chainNetMm10,799 chainNetMm10,811 chainNetMm10,851 chainNetMm10,874 chainNetMm10,884 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,132 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netMm10,23 netMm10,70 netMm10,145 netMm10,215 netMm10,227 netMm10,321 netMm10,332 netMm10,337 netMm10,349 netMm10,355 netMm10,378 netMm10,459 netMm10,473 netMm10,557 netMm10,660 netMm10,796 netMm10,808 netMm10,848 netMm10,871 netMm10,881 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 ucscToINSDC,22 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoMrna,89 xenoMrna,144 xenoMrna,181 xenoMrna,185 xenoMrna,200 xenoMrna,207 xenoMrna,211 xenoMrna,229 xenoMrna,249 xenoMrna,256 xenoMrna,355 xenoMrna,404 xenoMrna,414 xenoMrna,429 xenoMrna,452 xenoMrna,528 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together chainMm10,125 chainNetMm10,128 netMm10,125 tolerate chainMm10,93 chainNetMm10,96 netMm10,93 tolerated uniprot,1257 tool mrna,524 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoMrna,598 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainMm10,514 chainNetMm10,517 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netMm10,514 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level chainMm10,389 chainMm10,409 chainNetMm10,392 chainNetMm10,412 netMm10,389 netMm10,409 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,121 chainMm10,263 chainMm10,266 chainMm10,316 chainMm10,351 chainMm10,383 chainMm10,570 chainMm10,699 chainMm10,762 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,124 chainNetMm10,266 chainNetMm10,269 chainNetMm10,319 chainNetMm10,354 chainNetMm10,386 chainNetMm10,573 chainNetMm10,702 chainNetMm10,765 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 gap,9 gap,39 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,71 gold,140 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netMm10,14 netMm10,58 netMm10,61 netMm10,121 netMm10,263 netMm10,266 netMm10,316 netMm10,351 netMm10,383 netMm10,570 netMm10,699 netMm10,762 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 ucscToINSDC,15 ucscToINSDC,47 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoMrna,13 xenoMrna,36 xenoMrna,66 xenoMrna,136 xenoMrna,161 xenoMrna,173 xenoMrna,399 xenoMrna,518 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 chainMm10,776 chainNetMm10,779 genscan,56 genscan,74 mrna,40 mrna,363 netMm10,776 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoMrna,44 xenoMrna,437 xenoRefGene,56 traditional chainMm10,85 chainNetMm10,88 netMm10,85 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcript uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts augustusGene,124 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated xenoMrna,15 xenoMrna,81 xenoMrna,101 xenoMrna,471 translation augustusGene,57 translational genscan,29 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainMm10,571 chainMm10,596 chainMm10,906 chainNetMm10,574 chainNetMm10,599 chainNetMm10,909 netMm10,571 netMm10,596 netMm10,906 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainMm10,804 chainNetMm10,807 netMm10,804 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainMm10,338 chainNetMm10,341 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netMm10,338 xenoRefGene,133 turns uniprot,370 turtle chainMm10,73 chainMm10,100 chainMm10,158 chainMm10,205 chainMm10,272 chainMm10,280 chainMm10,580 chainMm10,633 chainNetMm10,76 chainNetMm10,103 chainNetMm10,161 chainNetMm10,208 chainNetMm10,275 chainNetMm10,283 chainNetMm10,583 chainNetMm10,636 gold,19 gold,27 mrna,2 mrna,5 mrna,20 mrna,389 netMm10,73 netMm10,100 netMm10,158 netMm10,205 netMm10,272 netMm10,280 netMm10,580 netMm10,633 xenoMrna,4 xenoMrna,30 xenoMrna,468 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainMm10,912 chainNetMm10,915 netMm10,912 uniprot,71 uniprot,630 uniprot,1641 xenoMrna,69 xenoMrna,106 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,153 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 xenoMrna,189 xenoMrna,219 types augustusGene,89 chainMm10,510 chainNetMm10,513 gap,81 mrna,194 mrna,366 netMm10,510 uniprot,676 xenoMrna,268 xenoMrna,440 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainMm10,1075 chainNetMm10,1078 netMm10,1075 ucsc mrna,448 nestedRepeats,245 ucscToINSDC,17 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoMrna,522 xenoRefGene,286 undergone xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath chainMm10,840 chainNetMm10,843 netMm10,840 unexpected uniprot,766 ungapped chainMm10,449 chainNetMm10,452 netMm10,449 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 universal uniprot,1993 university chainMm10,926 chainMm10,960 chainMm10,1006 chainMm10,1029 chainNetMm10,929 chainNetMm10,963 chainNetMm10,1009 chainNetMm10,1032 netMm10,926 netMm10,960 netMm10,1006 netMm10,1029 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainMm10,230 chainNetMm10,233 netMm10,230 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainMm10,187 chainNetMm10,190 netMm10,187 unsure rmsk,263 up gold,77 rmsk,146 update mrna,503 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoMrna,577 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use gold,88 mrna,112 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 xenoMrna,186 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainMm10,299 chainMm10,673 chainMm10,704 chainMm10,795 chainMm10,847 chainMm10,880 chainNetMm10,302 chainNetMm10,676 chainNetMm10,707 chainNetMm10,798 chainNetMm10,850 chainNetMm10,883 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 genscan,159 mrna,69 mrna,221 mrna,280 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netMm10,299 netMm10,673 netMm10,704 netMm10,795 netMm10,847 netMm10,880 rmsk,299 rmsk,341 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 xenoMrna,143 xenoMrna,295 xenoMrna,354 useful chainMm10,284 chainMm10,483 chainNetMm10,287 chainNetMm10,486 microsat,20 netMm10,284 netMm10,483 user mrna,339 xenoMrna,413 users uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 using augustusGene,294 chainMm10,75 chainMm10,609 chainMm10,769 chainNetMm10,78 chainNetMm10,612 chainNetMm10,772 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 microsat,90 mrna,396 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netMm10,75 netMm10,609 netMm10,769 rmsk,15 rmsk,290 uniprot,217 uniprot,722 uniprot,1526 xenoMrna,470 xenoRefGene,227 ustat windowmaskerSdust,66 usually nestedRepeats,192 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 v3.1 augustusGene,7 valid mrna,160 xenoMrna,234 validate xenoRefGene,153 validation genscan,107 value mrna,231 xenoMrna,305 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainMm10,1033 chainNetMm10,1036 netMm10,1033 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 rmsk,58 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 nestedRepeats,251 nestedRepeats,267 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 xenoMrna,19 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view chainMm10,460 chainNetMm10,463 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,156 netMm10,460 xenoMrna,230 viewed gold,80 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 w chainMm10,1035 chainMm10,1055 chainMm10,1103 chainNetMm10,1038 chainNetMm10,1058 chainNetMm10,1106 gold,155 netMm10,1035 netMm10,1055 netMm10,1103 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainMm10,654 chainMm10,672 chainMm10,793 chainMm10,838 chainMm10,846 chainMm10,866 chainMm10,878 chainMm10,903 chainMm10,921 chainMm10,956 chainNetMm10,657 chainNetMm10,675 chainNetMm10,796 chainNetMm10,841 chainNetMm10,849 chainNetMm10,869 chainNetMm10,881 chainNetMm10,906 chainNetMm10,924 chainNetMm10,959 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,415 mrna,445 netMm10,654 netMm10,672 netMm10,793 netMm10,838 netMm10,846 netMm10,866 netMm10,878 netMm10,903 netMm10,921 netMm10,956 rmsk,12 rmsk,262 simpleRepeat,68 ucscToINSDC,48 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoMrna,488 xenoMrna,519 xenoRefGene,254 xenoRefGene,283 way uniprot,1459 ways gc5BaseBw,47 we rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 webb chainMm10,935 chainMm10,972 chainNetMm10,938 chainNetMm10,975 netMm10,935 netMm10,972 weekly xenoRefGene,42 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainMm10,582 chainMm10,590 chainMm10,597 chainMm10,604 chainMm10,616 chainMm10,690 chainMm10,764 chainMm10,944 chainMm10,988 chainMm10,1002 chainNetMm10,585 chainNetMm10,593 chainNetMm10,600 chainNetMm10,607 chainNetMm10,619 chainNetMm10,693 chainNetMm10,767 chainNetMm10,947 chainNetMm10,991 chainNetMm10,1005 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 gc5BaseBw,79 gold,32 gold,40 mrna,391 mrna,439 netMm10,582 netMm10,590 netMm10,597 netMm10,604 netMm10,616 netMm10,690 netMm10,764 netMm10,944 netMm10,988 netMm10,1002 ucscToINSDC,35 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoMrna,463 xenoMrna,513 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler mrna,500 xenoMrna,574 when augustusGene,188 augustusGene,238 chainMm10,411 chainNetMm10,414 gold,37 mrna,92 mrna,102 mrna,400 netMm10,411 uniprot,951 uniprot,1202 uniprot,1632 xenoMrna,166 xenoMrna,176 xenoMrna,473 xenoRefGene,239 where chainMm10,194 chainNetMm10,197 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,95 netMm10,194 uniprot,1192 whether chainMm10,862 chainNetMm10,865 netMm10,862 which augustusGene,159 augustusGene,227 chainMm10,328 chainMm10,620 chainMm10,827 chainNetMm10,331 chainNetMm10,623 chainNetMm10,830 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,179 nestedRepeats,31 nestedRepeats,87 netMm10,328 netMm10,620 netMm10,827 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 uniprot,158 uniprot,1380 uniprot,1768 xenoMrna,253 while chainMm10,218 chainNetMm10,221 netMm10,218 white gap,64 whole chainMm10,468 chainNetMm10,471 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,157 netMm10,468 whole-genome gold,29 whose xenoMrna,80 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,217 xenoMrna,291 will gap,24 mrna,250 mrna,268 mrna,297 mrna,314 rmsk,277 rmsk,283 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 xenoMrna,324 xenoMrna,342 xenoMrna,371 xenoMrna,388 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,181 xenoMrna,255 xenoRefGene,207 with augustusGene,127 augustusGene,322 chainMm10,42 chainMm10,209 chainMm10,220 chainMm10,592 chainMm10,705 chainMm10,781 chainMm10,905 chainMm10,937 chainMm10,969 chainMm10,1106 chainNetMm10,45 chainNetMm10,212 chainNetMm10,223 chainNetMm10,595 chainNetMm10,708 chainNetMm10,784 chainNetMm10,908 chainNetMm10,940 chainNetMm10,972 chainNetMm10,1109 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,17 gc5BaseBw,35 gold,141 microsat,69 microsat,76 mrna,435 nestedRepeats,133 netMm10,42 netMm10,209 netMm10,220 netMm10,592 netMm10,705 netMm10,781 netMm10,905 netMm10,937 netMm10,969 netMm10,1106 rmsk,111 rmsk,225 simpleRepeat,52 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoMrna,509 xenoRefGene,230 xenoRefGene,274 within gold,58 gold,117 gold,138 mrna,85 mrna,424 simpleRepeat,37 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoMrna,159 xenoMrna,498 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainMm10,1049 chainMm10,1091 chainNetMm10,1052 chainNetMm10,1094 mrna,519 netMm10,1049 netMm10,1091 xenoMrna,593 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,462 xenoMrna,536 xenoRefGene,294 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xml uniprot,1510 yap chainMm10,1032 chainNetMm10,1035 netMm10,1032 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you mrna,180 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoMrna,254 xenoRefGene,206 younger nestedRepeats,94 your uniprot,1783 z chainMm10,1095 chainNetMm10,1098 netMm10,1095 zebrafish augustusGene,202 augustusGene,278 zhang chainMm10,933 chainMm10,1094 chainNetMm10,936 chainNetMm10,1097 netMm10,933 netMm10,1094 zheng chainMm10,932 chainNetMm10,935 netMm10,932 zinc uniprot,326 zoomed-in genscan,103