0 uniprot,1822 0.2 augustusGene,136 0.5 augustusGene,138 mrna,384 xenoRefGene,255 1 augustusGene,310 chainDm3,555 genscan,227 mrna,440 netDm3,75 netDm3,206 netDm3,512 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 10 uniprot,1928 100 augustusGene,134 chainDm3,523 microsat,70 netDm3,480 1000-2000 augustusGene,161 1000000 uniprot,1824 103-7 chainDm3,556 netDm3,513 10973072 rmsk,325 11484-9 chainDm3,525 netDm3,482 115-26 chainDm3,487 11928468 chainDm3,489 11932250 mrna,464 xenoRefGene,309 12 mrna,460 xenoRefGene,305 12529312 chainDm3,558 netDm3,515 127-163 genscan,206 13 chainDm3,554 netDm3,511 14500911 chainDm3,527 netDm3,484 14534192 augustusGene,340 14681350 mrna,446 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,227 15108278 uniprot,2051 16 rmsk,321 16600017 geneMapper,102 18218656 augustusGene,315 19 augustusGene,335 1990 blastDm2FB,186 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 microsat,66 microsat,132 netDm3,109 netDm3,114 simpleRepeat,92 uniprot,1121 uniprot,1331 2-3 uniprot,1572 20 chainDm3,524 netDm3,481 2000 rmsk,100 rmsk,319 2002 chainDm3,486 mrna,458 xenoRefGene,303 2003 augustusGene,333 chainDm3,520 chainDm3,552 netDm3,477 netDm3,509 2004 mrna,438 uniprot,2045 2005 blastDm2FB,42 2006 chainDm3,7 chainDm3,25 geneMapper,97 netDm3,7 netDm3,58 2008 augustusGene,308 2012 uniprot,2000 2022_03 uniprot,1911 2023 uniprot,1191 215 blastDm2FB,189 22102590 uniprot,2007 23 uniprot,2047 24 augustusGene,311 25 blastDm2FB,40 gap,61 genscan,225 gold,83 xenoRefGene,262 268 genscan,226 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastDm2FB,190 microsat,68 netDm3,121 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainDm3,522 netDm3,479 32 mrna,441 4 geneMapper,99 mrna,461 xenoRefGene,306 40 uniprot,2002 403-410 blastDm2FB,191 418-20 rmsk,323 464-70 uniprot,2049 5 augustusGene,312 blastDm2FB,188 uniprot,2048 5-base gc5Base,6 gc5Base,27 573-80 microsat,133 simpleRepeat,93 60 blastDm2FB,122 blastDm2FB,134 blastDm2FB,142 637-44 augustusGene,313 656-64 mrna,462 xenoRefGene,307 7 geneMapper,98 78-94 genscan,228 9 geneMapper,56 rmsk,322 9149143 genscan,230 93 uniprot,1483 96 mrna,391 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainDm3,35 chainDm3,106 chainDm3,160 chainDm3,325 chainDm3,331 chainDm3,337 chainDm3,341 chainDm3,352 chainDm3,384 chainDm3,495 chainDm3,519 chainDm3,535 gap,39 gap,53 gap,57 gc5Base,44 geneMapper,18 geneMapper,27 geneMapper,73 genscan,102 genscan,132 gold,61 gold,75 gold,79 gold,150 gold,153 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,360 mrna,379 netDm3,141 netDm3,151 netDm3,155 netDm3,222 netDm3,239 netDm3,242 netDm3,292 netDm3,306 netDm3,312 netDm3,318 netDm3,322 netDm3,325 netDm3,353 netDm3,452 netDm3,476 netDm3,492 rmsk,36 rmsk,56 rmsk,196 rmsk,308 simpleRepeat,79 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 xenoRefGene,231 xenoRefGene,250 a91-90-25-100 chainDm3,377 aa unipModif,1 ab augustusGene,3 augustusGene,16 about genscan,127 microsat,98 mrna,340 netDm3,147 netDm3,160 netDm3,342 simpleRepeat,59 xenoRefGene,180 above netDm3,219 netDm3,231 netDm3,251 uniprot,1525 abundance chainDm3,142 acad chainDm3,515 netDm3,472 acceptor genscan,32 access uniprot,896 uniprot,1706 uniprot,1838 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 acgt chainDm3,376 acid blastDm2FB,76 unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids blastDm2FB,148 microsat,126 mrna,436 simpleRepeat,86 uniprot,620 uniprot,1998 acronym uniprot,546 added uniprot,1187 additional rmsk,254 admin uniprot,1917 advice chainDm3,415 chainDm3,447 netDm3,442 affine chainDm3,45 after netDm3,400 uniprot,294 uniprot,1329 again uniprot,629 uniprot,1500 against mrna,333 mrna,352 xenoRefGene,213 agencourt gap,36 gold,58 alejo uniprot,1966 algorithm augustusGene,130 algorithms uniprot,52 align chainDm3,158 uniprot,1216 aligned blastDm2FB,59 blastDm2FB,84 chainDm3,298 mrna,351 mrna,363 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,212 xenoRefGene,234 aligning chainDm3,95 chainDm3,241 chainDm3,271 uniprot,952 alignment blastDm2FB,180 chainDm3,218 mrna,39 mrna,368 mrna,454 netDm3,11 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,223 xenoRefGene,239 xenoRefGene,299 alignments augustusGene,300 blastDm2FB,22 chainDm3,12 chainDm3,19 chainDm3,303 chainDm3,315 chainDm3,323 chainDm3,351 chainDm3,482 chainDm3,547 mrna,17 mrna,377 netDm3,134 netDm3,258 netDm3,504 rmsk,265 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,248 all augustusGene,207 chainDm3,322 gap,72 gold,161 mrna,138 mrna,192 mrna,236 rmsk,65 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allows augustusGene,168 chainDm3,40 mrna,326 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 already netDm3,303 also blastDm2FB,150 chainDm3,51 gap,17 gold,34 mrna,208 mrna,316 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter mrna,75 alternating gold,117 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 altschul blastDm2FB,168 alus rmsk,131 always gold,145 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 amino blastDm2FB,75 blastDm2FB,147 unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,185 amsterdam genscan,201 an blastDm2FB,104 chainDm3,114 chainDm3,141 chainDm3,147 gc5Base,65 rmsk,311 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,222 analysis uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 anan mrna,2 ananassae blastDm2FB,46 blastDm2FB,88 blastDm2FB,98 chainDm3,32 chainDm3,60 chainDm3,119 chainDm3,166 chainDm3,296 chainDm3,334 gap,29 geneMapper,48 gold,18 mrna,5 mrna,20 mrna,348 netDm3,24 netDm3,32 xenoRefGene,4 xenoRefGene,25 xenoRefGene,216 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastDm2FB,14 blastDm2FB,29 blastDm2FB,138 chainDm3,58 chainDm3,73 chainDm3,190 chainDm3,196 chainDm3,208 chainDm3,221 chainDm3,294 chainDm3,330 chainDm3,339 chainDm3,411 chainDm3,426 chainDm3,451 chainDm3,457 chainDm3,468 chainDm3,505 chainDm3,510 gap,5 gap,80 gc5Base,9 gc5Base,22 gc5Base,74 geneMapper,7 geneMapper,110 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,43 gold,119 gold,133 gold,139 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,388 netDm3,41 netDm3,66 netDm3,123 netDm3,269 netDm3,347 netDm3,379 netDm3,390 netDm3,399 netDm3,409 netDm3,438 netDm3,462 netDm3,467 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 simpleRepeat,9 simpleRepeat,42 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,191 xenoRefGene,259 xenoRefGene,286 annot unipOther,2 annotated rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation geneMapper,92 netDm3,53 rmsk,38 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations geneMapper,23 geneMapper,35 geneMapper,120 genscan,120 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 any mrna,251 uniprot,660 uniprot,1146 uniprot,1250 apply mrna,134 approach uniprot,1531 appropriate xenoRefGene,112 apr chainDm3,6 chainDm3,24 genscan,224 mrna,459 netDm3,6 netDm3,57 xenoRefGene,304 apsects gc5Base,51 arachne gap,47 gold,69 archive uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are augustusGene,27 chainDm3,102 chainDm3,173 chainDm3,184 chainDm3,230 chainDm3,391 gap,74 gap,81 genscan,25 genscan,160 gold,111 gold,128 gold,166 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netDm3,77 netDm3,98 netDm3,105 netDm3,188 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,40 xenoRefGene,105 xenoRefGene,194 areas gc5Base,37 arian chainDm3,424 rmsk,16 rmsk,287 as augustusGene,77 augustusGene,79 blastDm2FB,38 gap,19 geneMapper,72 genscan,35 genscan,37 gold,36 microsat,21 netDm3,150 netDm3,190 netDm3,213 netDm3,228 netDm3,296 netDm3,351 rmsk,53 rmsk,55 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 ascii uniprot,1762 assembled gold,24 assembler gap,48 gold,70 assemblies augustusGene,196 augustusGene,237 chainDm3,229 assembly augustusGene,197 chainDm3,112 chainDm3,120 gap,25 gap,32 gap,51 gold,1 gold,2 gold,14 gold,54 gold,73 netDm3,63 uniprot,445 uniprot,701 associated gc5Base,34 rmsk,194 simpleRepeat,51 uniprot,787 at blastDm2FB,140 chainDm3,400 chainDm3,435 chainDm3,440 gap,70 geneMapper,113 gold,92 microsat,28 microsat,77 mrna,389 mrna,406 netDm3,107 netDm3,291 netDm3,414 netDm3,427 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,93 xenoRefGene,260 xenoRefGene,276 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 automated uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 uniprot,881 uniprot,1660 uniprot,1981 aware uniprot,1456 axt chainDm3,307 chainDm3,314 axtchain chainDm3,319 chainDm3,431 baertsch augustusGene,290 chainDm3,467 chainDm3,492 chainDm3,538 netDm3,449 netDm3,495 bairoch uniprot,2022 base gap,62 gold,84 mrna,372 mrna,380 mrna,392 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,243 xenoRefGene,251 xenoRefGene,263 based augustusGene,28 chainDm3,232 chainDm3,258 geneMapper,91 genscan,26 gold,48 uniprot,60 uniprot,727 uniprot,1604 bases gc5Base,25 basic blastDm2FB,178 basis uniprot,1570 bdgp chainDm3,8 chainDm3,26 netDm3,8 netDm3,59 be augustusGene,99 chainDm3,68 gc5Base,41 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 netDm3,117 rmsk,235 rmsk,257 simpleRepeat,44 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,88 because uniprot,674 beckman gap,42 gold,64 been geneMapper,37 rmsk,70 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before netDm3,398 uniprot,934 below chainDm3,383 genscan,154 genscan,168 rmsk,105 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,423 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 berkeley gap,71 geneMapper,116 gold,93 best blastDm2FB,115 mrna,387 netDm3,20 netDm3,200 uniprot,1074 uniprot,1415 xenoRefGene,258 beta uniprot,364 better mrna,55 between chainDm3,324 gap,12 gold,46 gold,125 gold,130 mrna,18 netDm3,345 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed uniprot,1767 uniprot,1812 binaries uniprot,1791 binary uniprot,1781 biocomput chainDm3,485 bioinformatics augustusGene,307 augustusGene,332 biol blastDm2FB,185 geneMapper,96 genscan,222 biological uniprot,320 biology genscan,200 bioscience gap,37 gold,59 birds augustusGene,203 blast blastDm2FB,159 blastDm2FB,166 uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,453 xenoRefGene,298 blastz chainDm3,300 chainDm3,397 chainDm3,549 netDm3,257 netDm3,424 netDm3,506 blat blastDm2FB,67 blastDm2FB,192 mrna,357 mrna,451 xenoRefGene,219 xenoRefGene,296 blocks chainDm3,348 chainDm3,369 gold,135 gold,160 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainDm3,55 chainDm3,77 chainDm3,132 netDm3,388 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,188 boundaries blastDm2FB,72 gold,110 box chainDm3,282 mrna,154 mrna,165 mrna,205 netDm3,142 xenoRefGene,207 boxes chainDm3,83 chainDm3,93 mrna,125 netDm3,131 branch-point augustusGene,55 brian blastDm2FB,212 uniprot,1959 bridge gold,158 bridged gap,82 briefly uniprot,778 brown gold,120 gold,134 browser chainDm3,455 mrna,172 mrna,285 mrna,302 uniprot,1544 uniprot,1721 browsing uniprot,1662 build uniprot,1552 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastDm2FB,109 netDm3,233 rmsk,270 uniprot,638 uniprot,1047 button chainDm3,253 by augustusGene,147 augustusGene,266 augustusGene,282 blastDm2FB,10 blastDm2FB,195 blastDm2FB,208 chainDm3,70 chainDm3,86 chainDm3,223 chainDm3,286 chainDm3,404 chainDm3,423 chainDm3,443 chainDm3,465 gap,35 gap,67 gap,83 gc5Base,81 geneMapper,39 genscan,20 genscan,88 genscan,121 gold,57 gold,89 gold,113 microsat,110 mrna,419 netDm3,101 netDm3,119 netDm3,305 netDm3,421 netDm3,431 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,186 xenoRefGene,283 xenoRefGene,288 c gc5Base,23 geneMapper,115 genscan,181 genscan,208 c-90100-100-25 chainDm3,378 caenorhabditis augustusGene,212 california chainDm3,439 netDm3,418 can augustusGene,98 chainDm3,50 chainDm3,67 mrna,67 mrna,198 simpleRepeat,35 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,87 cannot uniprot,1269 cases chainDm3,154 netDm3,88 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized netDm3,189 cauldron chainDm3,502 netDm3,459 cause netDm3,171 caused chainDm3,69 cdna augustusGene,299 cell uniprot,563 cerevisiae augustusGene,222 certain rmsk,260 chain chainDm3,3 chainDm3,80 netDm3,25 netDm3,94 netDm3,149 netDm3,265 netDm3,308 netDm3,319 netDm3,327 netDm3,332 netDm3,355 netDm3,364 uniprot,290 chained blastDm2FB,11 blastDm2FB,101 chainDm3,11 chainnet netDm3,282 netDm3,407 chains blastDm2FB,117 blastDm2FB,130 chainDm3,157 chainDm3,169 chainDm3,180 chainDm3,226 chainDm3,265 chainDm3,366 chainDm3,381 chainDm3,390 chainDm3,462 netDm3,76 netDm3,81 netDm3,103 netDm3,115 netDm3,122 netDm3,179 netDm3,253 netDm3,274 netDm3,289 netDm3,349 netDm3,380 unipChain,1 unipChain,7 uniprot,288 change mrna,71 changed uniprot,1382 characteristic mrna,265 chatterji geneMapper,86 geneMapper,109 check chainDm3,248 checkbox uniprot,231 chiaromonte chainDm3,472 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 mrna,221 mrna,260 uniprot,657 chosen mrna,283 chr4 chainDm3,280 chr6 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrom uniprot,1819 chromosome chainDm3,206 chainDm3,235 chainDm3,260 chainDm3,268 chainDm3,278 chainDm3,287 chainDm3,329 chainDm3,335 netDm3,212 netDm3,227 netDm3,243 uniprot,1416 chromosome-based chainDm3,228 circle rmsk,172 class rmsk,169 classes rmsk,121 clawson gc5Base,83 cleaved uniprot,249 click gc5Base,56 mrna,343 netDm3,139 netDm3,153 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,175 xenoRefGene,205 clicking uniprot,1633 closest augustusGene,241 code uniprot,1546 uniprot,1775 uniprot,1789 coding simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,203 codon genscan,100 genscan,122 mrna,321 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 codons genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 coiled-coil uniprot,367 colin geneMapper,62 collection xenoRefGene,33 color chainDm3,256 genscan,86 genscan,96 mrna,77 mrna,262 rmsk,177 xenoRefGene,58 xenoRefGene,169 coloration gold,121 colored chainDm3,231 uniprot,160 uniprot,176 coloring chainDm3,247 genscan,116 mrna,322 xenoRefGene,139 xenoRefGene,146 colors xenoRefGene,81 xenoRefGene,161 combination mrna,224 combined rmsk,202 command uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 comparative chainDm3,13 netDm3,13 compare mrna,331 xenoRefGene,155 comparison genscan,109 uniprot,1260 compiled uniprot,1771 complete genscan,213 completely uniprot,1464 xenoRefGene,137 complex chainDm3,125 complexity rmsk,30 rmsk,153 components gold,162 composed uniprot,1396 compositional genscan,41 uniprot,399 computational genscan,196 uniprot,51 conditional augustusGene,118 configuration chainDm3,222 gc5Base,60 gc5Base,69 genscan,64 genscan,84 mrna,30 netDm3,67 rmsk,109 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,46 configured gc5Base,42 mrna,318 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 consistency uniprot,402 consortium uniprot,1986 consult mrna,166 contact uniprot,686 uniprot,1440 contain uniprot,1163 contained netDm3,381 contains blastDm2FB,20 mrna,191 xenoRefGene,142 content augustusGene,71 gc5Base,31 contig gap,78 gold,109 gold,176 contigs gap,13 gold,26 gold,29 gold,47 gold,101 gold,126 gold,143 gold,148 controls xenoRefGene,92 convenience uniprot,404 conventions chainDm3,220 genscan,62 genscan,70 mrna,28 mrna,36 netDm3,65 rmsk,107 uniprot,447 xenoRefGene,44 xenoRefGene,52 converted chainDm3,305 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponds mrna,174 coulter gap,43 gold,65 coverage uniprot,1485 covered netDm3,304 created microsat,89 rmsk,13 uniprot,824 uniprot,1942 creates chainDm3,340 credits augustusGene,247 blastDm2FB,152 chainDm3,396 gc5Base,71 geneMapper,105 genscan,169 microsat,104 mrna,400 netDm3,405 rmsk,284 simpleRepeat,66 uniprot,1938 xenoRefGene,271 criteria mrna,238 mrna,256 mrna,294 mrna,312 cruz chainDm3,442 netDm3,420 culex augustusGene,220 curated uniprot,35 uniprot,110 uniprot,142 xenoRefGene,287 current mrna,109 rmsk,216 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,106 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine gc5Base,24 d augustusGene,293 blastDm2FB,1 blastDm2FB,5 blastDm2FB,35 blastDm2FB,45 blastDm2FB,54 blastDm2FB,62 blastDm2FB,87 blastDm2FB,97 chainDm3,1 chainDm3,4 chainDm3,21 chainDm3,31 chainDm3,56 chainDm3,59 chainDm3,110 chainDm3,118 chainDm3,165 chainDm3,292 chainDm3,295 chainDm3,327 chainDm3,333 chainDm3,499 chainDm3,543 gap,28 geneMapper,41 geneMapper,47 geneMapper,77 genscan,192 gold,17 mrna,1 mrna,4 mrna,19 mrna,347 netDm3,1 netDm3,4 netDm3,21 netDm3,23 netDm3,31 netDm3,47 netDm3,456 netDm3,500 xenoRefGene,24 xenoRefGene,215 d23-6 mrna,444 d71-5 uniprot,2005 da mrna,424 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darkly mrna,50 data gc5Base,73 microsat,47 mrna,411 rmsk,229 rmsk,246 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,36 xenoRefGene,281 database chainDm3,458 mrna,442 rmsk,309 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 databases mrna,418 david chainDm3,452 de augustusGene,303 default chainDm3,224 uniprot,225 xenoRefGene,103 xenoRefGene,187 defined uniprot,305 uniprot,1387 deletion chainDm3,107 chainDm3,504 netDm3,461 rmsk,190 deletions chainDm3,75 chainDm3,140 dense gold,95 mrna,42 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gap,10 gold,99 deprecated uniprot,1044 derived netDm3,255 uniprot,830 described genscan,161 netDm3,262 rmsk,96 uniprot,1524 describes augustusGene,226 description augustusGene,12 blastDm2FB,17 chainDm3,15 gap,7 gc5Base,11 geneMapper,10 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,12 mrna,58 netDm3,15 netDm3,267 rmsk,9 simpleRepeat,11 uniprot,11 uniprot,106 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed uniprot,1355 desired mrna,223 destined uniprot,244 detail genscan,164 detailed augustusGene,90 netDm3,145 netDm3,164 rmsk,37 uniprot,692 details uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determining netDm3,169 developed chainDm3,399 chainDm3,434 netDm3,413 netDm3,426 dewey geneMapper,63 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 gc5Base,50 genscan,54 netDm3,244 rmsk,120 uniprot,634 directly uniprot,993 discarded chainDm3,387 xenoRefGene,229 discover blastDm2FB,70 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainDm3,198 chainDm3,219 chainDm3,262 chainDm3,456 genscan,61 genscan,69 genscan,104 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 netDm3,64 netDm3,70 netDm3,129 netDm3,158 netDm3,187 rmsk,106 rmsk,112 rmsk,182 uniprot,446 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainDm3,392 gc5Base,54 netDm3,106 netDm3,203 xenoRefGene,195 displays chainDm3,82 microsat,13 rmsk,116 simpleRepeat,14 dissertation augustusGene,105 distinguished gold,112 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged netDm3,404 divided uniprot,56 dj blastDm2FB,177 mrna,428 dl mrna,432 dm2 blastDm2FB,4 blastDm2FB,8 dm3 chainDm3,10 chainDm3,23 chainDm3,28 netDm3,10 netDm3,61 netDm3,62 dna genscan,219 microsat,123 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 do uniprot,168 uniprot,1129 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainDm3,90 chainDm3,121 double-lined chainDm3,182 double-sided chainDm3,64 download uniprot,1744 uniprot,1983 downloaded uniprot,1741 uniprot,1777 downloading uniprot,1787 downloads rmsk,76 uniprot,1698 draft gold,13 drawn gold,156 draws uniprot,1532 droana2 uniprot,1816 drosophila augustusGene,213 due chainDm3,104 chainDm3,175 chainDm3,187 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainDm3,503 netDm3,460 during netDm3,309 dynamic chainDm3,353 e uniprot,2021 e.g chainDm3,279 uniprot,398 uniprot,467 each blastDm2FB,81 chainDm3,216 genscan,99 mrna,163 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 eisen gap,69 gold,91 either chainDm3,87 uniprot,816 uniprot,1398 electronic rmsk,312 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 elsevier genscan,202 emerged netDm3,315 end uniprot,126 uniprot,210 uniprot,1823 ensembl uniprot,731 uniprot,834 uniprot,865 enter chainDm3,273 entered mrna,200 entirely uniprot,1434 especially mrna,101 est mrna,11 etc uniprot,479 evaluate uniprot,1461 even uniprot,136 every netDm3,27 uniprot,1571 evidence gap,85 gold,52 evolution chainDm3,500 netDm3,457 ew blastDm2FB,175 exact uniprot,1622 uniprot,1747 example mrna,132 mrna,185 uniprot,1450 uniprot,1811 uniprot,1901 except uniprot,508 exclude mrna,80 mrna,274 mrna,280 exe uniprot,1918 exist gold,124 netDm3,90 exon augustusGene,86 blastDm2FB,71 blastDm2FB,82 blastDm2FB,116 blastDm2FB,129 exons blastDm2FB,99 genscan,44 expansions simpleRepeat,48 experimentally uniprot,304 explanation gc5Base,66 explored uniprot,1716 expressed mrna,140 extend rmsk,267 extended blastDm2FB,132 extending blastDm2FB,118 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 f chainDm3,473 facilitate genscan,106 uniprot,1852 factor mrna,177 famiglietti uniprot,2018 families uniprot,1395 faq augustusGene,45 genscan,60 rmsk,280 uniprot,1839 far uniprot,599 feature chainDm3,202 genscan,129 mrna,324 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,147 xenoRefGene,182 features uniprot,694 uniprot,1805 xenoRefGene,83 fed chainDm3,317 feedback uniprot,1445 uniprot,1961 field augustusGene,120 file uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 filenames uniprot,1748 uniprot,1894 files uniprot,1863 fill netDm3,339 netDm3,372 filled netDm3,99 netDm3,118 netDm3,321 netDm3,394 filter chainDm3,285 genscan,82 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 uniprot,187 uniprot,664 filtered mrna,276 uniprot,1480 uniprot,1499 filtering mrna,215 uniprot,693 uniprot,912 uniprot,1154 final uniprot,1153 finally blastDm2FB,94 find chainDm3,362 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netDm3,38 finger uniprot,327 first blastDm2FB,49 netDm3,279 uniprot,70 fish augustusGene,201 fit netDm3,299 fix uniprot,851 flag rmsk,253 flags rmsk,255 fly augustusGene,214 flybase blastDm2FB,37 blastDm2FB,56 following chainDm3,371 genscan,81 follows genscan,67 mrna,33 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastDm2FB,162 chainDm3,215 gc5Base,64 geneMapper,20 geneMapper,117 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 gold,147 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 netDm3,26 netDm3,37 netDm3,42 netDm3,176 rmsk,25 rmsk,259 rmsk,281 rmsk,291 simpleRepeat,30 simpleRepeat,56 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 xenoRefGene,20 xenoRefGene,53 xenoRefGene,177 form uniprot,1665 format chainDm3,308 formats uniprot,885 uniprot,1865 forth netDm3,125 found augustusGene,100 mrna,375 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four netDm3,193 fragment gold,168 fragments gold,4 free uniprot,1435 from augustusGene,19 blastDm2FB,26 blastDm2FB,52 chainDm3,137 chainDm3,416 chainDm3,448 geneMapper,4 geneMapper,26 genscan,15 gold,3 mrna,7 mrna,408 netDm3,55 netDm3,245 netDm3,256 netDm3,443 rmsk,86 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 xenoRefGene,27 xenoRefGene,167 xenoRefGene,278 fruitfly geneMapper,57 full chainDm3,197 netDm3,69 rmsk,111 uniprot,486 uniprot,528 uniprot,540 furthermore augustusGene,64 g gc5Base,20 microsat,115 simpleRepeat,75 g-25-100100-90 chainDm3,379 gambiae augustusGene,219 gap blastDm2FB,107 blastDm2FB,111 chainDm3,36 chainDm3,46 chainDm3,149 gap,1 gap,2 gap,55 gap,58 gold,44 gold,77 gold,80 netDm3,162 netDm3,174 netDm3,197 netDm3,215 netDm3,230 netDm3,247 netDm3,323 gapless chainDm3,346 gaps chainDm3,42 chainDm3,53 chainDm3,66 chainDm3,100 chainDm3,126 chainDm3,172 chainDm3,183 gap,11 gap,73 gold,123 netDm3,89 netDm3,111 netDm3,138 netDm3,378 netDm3,384 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb uniprot,1815 gc gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 genbank mrna,8 mrna,23 mrna,346 mrna,433 uniprot,376 gencode uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastDm2FB,15 geneMapper,8 geneMapper,14 geneMapper,22 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 gene-rich gc5Base,36 genedx uniprot,1973 genemapper geneMapper,1 geneMapper,2 geneMapper,17 geneMapper,94 generally rmsk,72 uniprot,248 generate rmsk,227 rmsk,300 generated chainDm3,464 rmsk,248 xenoRefGene,282 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastDm2FB,13 blastDm2FB,31 geneMapper,6 geneMapper,44 geneMapper,80 genscan,2 genscan,6 genscan,59 simpleRepeat,41 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,185 xenoRefGene,193 xenoRefGene,204 genet rmsk,318 genetic rmsk,88 genome augustusGene,31 blastDm2FB,64 chainDm3,33 chainDm3,167 chainDm3,550 gap,30 geneMapper,29 geneMapper,49 geneMapper,52 geneMapper,95 gold,19 gold,174 mrna,26 mrna,354 mrna,456 netDm3,33 netDm3,44 netDm3,277 netDm3,507 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,217 xenoRefGene,301 genome.bed uniprot,1935 uniprot,1937 genomes chainDm3,290 chainDm3,512 geneMapper,33 geneMapper,58 geneMapper,84 netDm3,469 uniprot,863 uniprot,941 genomic chainDm3,480 genscan,92 genscan,218 mrna,335 mrna,396 netDm3,181 uniprot,28 uniprot,450 xenoRefGene,164 xenoRefGene,267 genomics chainDm3,14 gap,44 gold,66 netDm3,14 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 giri rmsk,92 rmsk,290 gish blastDm2FB,170 github uniprot,1559 given uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go genscan,113 uniprot,1412 gold gold,118 gold,132 goldenpath uniprot,1907 graph gc5Base,59 gc5Base,78 graphical netDm3,128 rmsk,181 green uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainDm3,338 uniprot,430 grouped gold,31 groups augustusGene,194 gt uniprot,907 uniprot,909 uniprot,1930 guanine gc5Base,21 guide geneMapper,74 h uniprot,2013 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hardison chainDm3,418 chainDm3,540 netDm3,445 netDm3,497 has mrna,63 rmsk,212 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,68 haussler augustusGene,292 chainDm3,453 chainDm3,498 chainDm3,542 netDm3,455 netDm3,499 have geneMapper,36 rmsk,69 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having mrna,369 mrna,378 xenoRefGene,240 xenoRefGene,249 heavily uniprot,1533 helices uniprot,366 help gc5Base,61 helpful mrna,91 here mrna,344 uniprot,1795 xenoRefGene,176 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu uniprot,1814 uniprot,1906 uniprot,1916 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,183 hierarchy netDm3,314 high gc5Base,29 higher netDm3,346 rmsk,200 higher-level netDm3,363 higher-scoring netDm3,307 netDm3,326 highest mrna,371 uniprot,948 uniprot,1113 xenoRefGene,242 highest-scoring netDm3,80 netDm3,273 highlight gc5Base,49 mrna,271 highlighted mrna,241 mrna,259 uniprot,580 highly microsat,40 hinrichs chainDm3,494 netDm3,451 hiram gc5Base,82 his chainDm3,427 homology geneMapper,53 geneMapper,68 honeybee1 augustusGene,217 hou chainDm3,406 netDm3,433 how netDm3,374 netDm3,391 http uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainDm3,511 genscan,217 netDm3,468 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainDm3,546 netDm3,503 i mrna,426 id uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified blastDm2FB,32 chainDm3,422 xenoRefGene,246 identity microsat,71 mrna,373 mrna,381 mrna,393 xenoRefGene,244 xenoRefGene,252 xenoRefGene,264 ids uniprot,1292 if mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,196 ignored uniprot,1426 ii215-25 augustusGene,338 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 in augustusGene,101 blastDm2FB,33 chainDm3,54 chainDm3,76 chainDm3,108 chainDm3,116 chainDm3,131 chainDm3,150 chainDm3,153 chainDm3,193 chainDm3,210 chainDm3,239 chainDm3,269 chainDm3,281 chainDm3,393 chainDm3,507 gap,14 gap,66 gc5Base,5 gc5Base,26 gc5Base,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,88 gold,94 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,364 netDm3,51 netDm3,68 netDm3,86 netDm3,91 netDm3,100 netDm3,112 netDm3,126 netDm3,168 netDm3,185 netDm3,216 netDm3,234 netDm3,248 netDm3,275 netDm3,316 netDm3,324 netDm3,340 netDm3,373 netDm3,385 netDm3,464 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 xenoRefGene,235 include mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 blastDm2FB,128 blastDm2FB,151 includes rmsk,168 uniprot,1587 including geneMapper,24 rmsk,159 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainDm3,99 chainDm3,204 mrna,52 indicated gap,52 gold,74 indicates xenoRefGene,60 individual chainDm3,201 netDm3,183 information augustusGene,36 blastDm2FB,164 gc5Base,55 genscan,51 genscan,126 microsat,97 mrna,339 netDm3,146 netDm3,159 netDm3,165 netDm3,341 rmsk,89 rmsk,283 simpleRepeat,58 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,179 initiate rmsk,275 initio augustusGene,4 augustusGene,17 input uniprot,1952 inserted netDm3,397 insertion chainDm3,115 rmsk,193 inside uniprot,560 inspection uniprot,1653 instead xenoRefGene,120 institute rmsk,91 instructions uniprot,1785 integrator uniprot,1725 interactions uniprot,316 interactively uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international mrna,415 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainDm3,306 chainDm3,318 chainDm3,336 gold,25 gold,32 mrna,201 netDm3,300 uniprot,57 intron augustusGene,88 augustusGene,330 introns genscan,45 inv netDm3,221 inversions chainDm3,72 chainDm3,138 inverted netDm3,359 involve chainDm3,128 is blastDm2FB,154 gc5Base,32 gold,144 gold,155 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 netDm3,35 netDm3,54 netDm3,166 rmsk,95 simpleRepeat,28 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,443 uniprot,2004 it chainDm3,49 genscan,143 netDm3,34 netDm3,220 netDm3,232 uniprot,228 uniprot,625 uniprot,1586 item xenoRefGene,77 items mrna,46 mrna,84 mrna,94 mrna,277 netDm3,184 xenoRefGene,104 its uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j blastDm2FB,183 genscan,220 mrna,430 rmsk,99 rmsk,305 jan chainDm3,553 microsat,129 mrna,439 netDm3,510 simpleRepeat,89 uniprot,2001 jim blastDm2FB,196 blastDm2FB,209 chainDm3,444 chainDm3,469 netDm3,422 joined chainDm3,84 journal rmsk,313 june blastDm2FB,41 jurka rmsk,98 rmsk,304 k augustusGene,268 karlin genscan,148 genscan,209 karsch-mizrachi mrna,425 kasif genscan,193 kd-tree chainDm3,342 kd-trees chainDm3,360 keep uniprot,1486 kent blastDm2FB,197 blastDm2FB,210 chainDm3,445 chainDm3,470 chainDm3,490 chainDm3,532 mrna,449 netDm3,423 netDm3,447 netDm3,489 xenoRefGene,294 kept mrna,399 xenoRefGene,270 known blastDm2FB,30 gap,18 gold,35 gold,146 xenoRefGene,15 l geneMapper,89 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled uniprot,457 xenoRefGene,106 labels xenoRefGene,78 largely chainDm3,103 largest netDm3,79 lavtoaxt chainDm3,311 least blastDm2FB,141 microsat,29 microsat,78 mrna,390 xenoRefGene,261 lee uniprot,1955 length augustusGene,82 genscan,39 less uniprot,680 xenoRefGene,225 level mrna,382 netDm3,74 netDm3,108 netDm3,113 netDm3,120 netDm3,178 netDm3,205 netDm3,218 netDm3,250 rmsk,175 xenoRefGene,62 xenoRefGene,253 libraries rmsk,224 rmsk,297 library rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,207 like uniprot,1541 likely augustusGene,111 microsat,17 line gold,154 netDm3,156 rmsk,136 uniprot,1872 uniprot,1876 line-up netDm3,223 line-ups netDm3,208 lineage-specific chainDm3,419 lines chainDm3,91 chainDm3,98 chainDm3,122 netDm3,136 link gc5Base,63 uniprot,491 uniprot,1675 linux.x86_64 uniprot,1919 lior geneMapper,111 lipid uniprot,346 lipman blastDm2FB,176 mrna,427 lipoification uniprot,577 list mrna,158 uniprot,979 uniprot,1165 uniprot,1831 literature uniprot,434 lm uniprot,2019 local blastDm2FB,179 chainDm3,71 chainDm3,144 located simpleRepeat,21 location chainDm3,209 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 uniprot,451 logic mrna,225 long rmsk,132 rmsk,137 longer chainDm3,41 longest netDm3,201 lot uniprot,1950 low rmsk,29 rmsk,152 lower netDm3,177 lower-level netDm3,348 netDm3,354 ls-snp uniprot,1536 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 made uniprot,931 uniprot,938 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make blastDm2FB,79 gold,103 uniprot,1406 making uniprot,1978 manner uniprot,1469 manual uniprot,1652 many mrna,93 netDm3,87 uniprot,932 uniprot,1124 map chainDm3,237 geneMapper,69 uniprot,758 uniprot,1885 mapped augustusGene,298 blastDm2FB,9 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping gap,4 gc5Base,8 gold,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 maps geneMapper,54 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark uniprot,1539 uniprot,1956 markers microsat,23 markov augustusGene,325 masked rmsk,71 match chainDm3,214 mrna,235 mrna,250 mrna,291 mrna,309 netDm3,202 netDm3,240 uniprot,1305 uniprot,1341 matched blastDm2FB,139 matches mrna,53 matching chainDm3,217 uniprot,1068 uniprot,1075 matrix chainDm3,372 mature unipChain,3 uniprot,251 uniprot,292 maximally chainDm3,364 maximilian uniprot,1944 maximum blastDm2FB,106 maxtracks augustusGene,139 may chainDm3,135 gc5Base,40 mrna,89 mrna,207 mrna,315 netDm3,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 uniprot,2046 md5 uniprot,1601 mediating uniprot,314 medium xenoRefGene,73 mel blastDm2FB,2 chainDm3,2 netDm3,2 melanogaster blastDm2FB,6 blastDm2FB,36 blastDm2FB,55 blastDm2FB,63 chainDm3,5 chainDm3,22 chainDm3,57 chainDm3,111 chainDm3,293 chainDm3,328 geneMapper,42 geneMapper,78 netDm3,5 netDm3,22 netDm3,48 mellifera augustusGene,216 menu xenoRefGene,174 mercator geneMapper,65 method uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 blastDm2FB,48 chainDm3,288 geneMapper,50 genscan,130 genscan,197 microsat,45 mrna,345 netDm3,252 netDm3,261 rmsk,210 simpleRepeat,55 uniprot,777 xenoRefGene,208 michael gap,68 gold,90 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miller blastDm2FB,172 chainDm3,413 chainDm3,450 chainDm3,476 chainDm3,496 chainDm3,544 netDm3,440 netDm3,453 netDm3,501 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainDm3,405 netDm3,432 mismatch rmsk,188 misplacements uniprot,853 mode gold,96 mrna,44 mrna,74 netDm3,71 rmsk,113 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainDm3,199 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol blastDm2FB,184 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 blastDm2FB,120 blastDm2FB,163 chainDm3,124 chainDm3,185 genscan,50 genscan,125 genscan,163 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 rmsk,282 simpleRepeat,57 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,178 most augustusGene,93 augustusGene,110 rmsk,215 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainDm3,509 netDm3,466 uniprot,521 uniprot,535 mrna mrna,9 mrna,14 mrna,129 mrna,362 mrna,402 mrna,409 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,349 much netDm3,375 netDm3,392 mujica uniprot,1967 multiple chainDm3,156 mrna,365 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,236 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainDm3,145 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 myers blastDm2FB,174 name chainDm3,275 mrna,147 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainDm3,203 xenoRefGene,131 native augustusGene,295 natl chainDm3,514 netDm3,471 natural netDm3,313 nbci uniprot,822 nbsp chainDm3,375 ncbi blastDm2FB,158 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 xenoRefGene,29 xenoRefGene,290 necessary netDm3,297 negative gap,54 gold,76 nematodes augustusGene,211 net netDm3,3 netDm3,12 netclass netDm3,367 netDm3,410 netsyntenic netDm3,335 netDm3,408 new augustusGene,329 newer rmsk,236 newly geneMapper,31 next blastDm2FB,73 chainDm3,254 chainDm3,283 nig augustusGene,270 no blastDm2FB,110 microsat,73 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 non-coding augustusGene,75 xenoRefGene,184 non-d xenoRefGene,3 non-protein-coding xenoRefGene,18 xenoRefGene,192 nonsyn netDm3,238 not mrna,287 netDm3,302 rmsk,272 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note rmsk,230 uniprot,695 novo augustusGene,304 now gap,38 gold,60 uniprot,1680 ns netDm3,382 nuclear rmsk,126 rmsk,134 nucleic microsat,125 mrna,435 simpleRepeat,85 uniprot,1997 number augustusGene,153 rmsk,203 observed uniprot,1114 obtain uniprot,1803 obtained augustusGene,126 geneMapper,38 geneMapper,60 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 blastDm2FB,187 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastDm2FB,23 blastDm2FB,39 blastDm2FB,123 blastDm2FB,135 blastDm2FB,143 blastDm2FB,156 chainDm3,20 chainDm3,143 chainDm3,163 chainDm3,212 chainDm3,266 chainDm3,276 chainDm3,291 chainDm3,344 chainDm3,349 chainDm3,367 chainDm3,438 chainDm3,460 gap,23 gap,26 gap,41 gap,60 gap,75 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 geneMapper,16 geneMapper,55 genscan,43 genscan,110 genscan,134 genscan,212 gold,15 gold,63 gold,82 gold,116 gold,141 gold,167 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,385 netDm3,29 netDm3,172 netDm3,192 netDm3,376 netDm3,417 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 simpleRepeat,40 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,224 xenoRefGene,256 off chainDm3,245 chainDm3,251 xenoRefGene,134 offers genscan,79 often chainDm3,174 chainDm3,186 older uniprot,1560 uniprot,1647 on augustusGene,29 augustusGene,37 augustusGene,151 blastDm2FB,165 chainDm3,233 chainDm3,259 genscan,27 genscan,52 gold,49 mrna,178 mrna,216 netDm3,140 netDm3,154 netDm3,204 netDm3,209 netDm3,224 netDm3,263 rmsk,74 rmsk,243 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 once uniprot,647 one augustusGene,169 chainDm3,151 chainDm3,267 mrna,119 mrna,219 mrna,252 netDm3,191 netDm3,290 netDm3,386 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones uniprot,1041 ongoing uniprot,1569 only chainDm3,263 microsat,61 mrna,103 mrna,232 mrna,305 mrna,376 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,201 xenoRefGene,247 opposite netDm3,236 option augustusGene,167 augustusGene,187 genscan,94 mrna,342 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options gc5Base,70 genscan,85 or blastDm2FB,211 chainDm3,89 chainDm3,113 chainDm3,146 mrna,120 mrna,244 mrna,263 mrna,272 netDm3,175 netDm3,358 netDm3,387 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,132 order gold,41 gold,138 uniprot,872 organ mrna,144 mrna,150 organism chainDm3,242 chainDm3,272 organism-specific blastDm2FB,105 organisms netDm3,403 rmsk,261 uniprot,998 xenoRefGene,21 organizes chainDm3,321 orientation gold,42 gold,140 netDm3,237 orthologous netDm3,39 ostell mrna,429 other augustusGene,208 geneMapper,83 netDm3,102 netDm3,195 rmsk,165 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,22 others uniprot,1312 uniprot,1344 ouml augustusGene,269 our augustusGene,43 genscan,58 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainDm3,343 outputs rmsk,35 outside uniprot,558 over blastDm2FB,119 blastDm2FB,133 chainDm3,159 chainDm3,358 uniprot,522 uniprot,536 overlapping chainDm3,74 chainDm3,139 own uniprot,724 p genscan,205 pac chainDm3,483 pachter geneMapper,88 geneMapper,112 pack chainDm3,195 page genscan,78 genscan,123 mrna,59 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,100 pages netDm3,268 paired-end gold,50 paired-read gap,84 pairs gap,63 gold,85 pairwise chainDm3,479 paralogs chainDm3,189 part blastDm2FB,155 gap,40 gold,62 netDm3,28 particular augustusGene,234 chainDm3,161 uniprot,1019 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 penalty blastDm2FB,112 pennsylvania chainDm3,401 netDm3,428 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides blastDm2FB,25 unipLocSignal,5 uniprot,239 uniprot,512 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage gc5Base,18 perfect microsat,31 period microsat,65 permitted rmsk,273 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 place netDm3,287 placed netDm3,329 places mrna,366 xenoRefGene,237 please uniprot,685 uniprot,1439 uniprot,1826 pmc chainDm3,528 chainDm3,559 geneMapper,103 microsat,136 mrna,447 mrna,465 netDm3,485 netDm3,516 simpleRepeat,96 uniprot,2008 xenoRefGene,310 pmc148217 microsat,137 simpleRepeat,97 pmc1557983 geneMapper,104 pmc187518 mrna,466 xenoRefGene,311 pmc208784 chainDm3,529 netDm3,486 pmc308779 mrna,448 pmc3245120 uniprot,2009 pmc430961 chainDm3,560 netDm3,517 pmid augustusGene,314 augustusGene,339 chainDm3,488 chainDm3,526 chainDm3,557 geneMapper,101 genscan,229 microsat,134 mrna,445 mrna,463 netDm3,483 netDm3,514 rmsk,324 simpleRepeat,94 uniprot,2006 uniprot,2050 xenoRefGene,308 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position uniprot,610 positions uniprot,1495 possible gold,28 netDm3,96 uniprot,601 possibly simpleRepeat,18 post-processing uniprot,295 pre-mrna genscan,185 precompiled uniprot,1780 predicted blastDm2FB,28 blastDm2FB,50 uniprot,48 uniprot,193 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastDm2FB,16 geneMapper,3 geneMapper,9 geneMapper,15 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 prepared gc5Base,80 uniprot,712 present rmsk,44 presentation gc5Base,75 previous uniprot,1654 primary unipStruct,4 uniprot,360 problem uniprot,1359 uniprot,1389 proc chainDm3,513 netDm3,470 procedure uniprot,990 process netDm3,311 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainDm3,177 produce blastDm2FB,203 produced gap,34 gold,56 mrna,405 xenoRefGene,275 products unipChain,5 program augustusGene,21 augustusGene,257 blastDm2FB,68 blastDm2FB,93 chainDm3,312 chainDm3,354 chainDm3,429 chainDm3,432 geneMapper,19 geneMapper,66 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,358 netDm3,281 netDm3,334 netDm3,366 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 uniprot,1529 programs netDm3,411 uniprot,1877 project xenoRefGene,292 projected uniprot,800 pronounced uniprot,1392 prot.bed uniprot,1931 uniprot,1933 protein blastDm2FB,126 blastDm2FB,145 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,190 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins blastDm2FB,3 blastDm2FB,7 blastDm2FB,51 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 provide uniprot,1860 provided uniprot,817 provides uniprot,489 providing augustusGene,254 geneMapper,118 genscan,175 rmsk,292 provisional xenoRefGene,72 pseudogenes chainDm3,178 chainDm3,192 uniprot,1184 psl mrna,38 uniprot,1479 pslmap uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public mrna,416 uniprot,709 publications uniprot,38 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 putative blastDm2FB,96 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 quality mrna,56 query blastDm2FB,125 blastDm2FB,137 rmsk,47 rmsk,61 uniprot,1484 questions uniprot,1834 quickly mrna,330 xenoRefGene,152 quite simpleRepeat,45 quot chainDm3,63 chainDm3,65 chainDm3,250 chainDm3,252 gap,20 gap,22 gap,77 gap,79 gc5Base,58 gc5Base,62 gold,37 gold,39 gold,170 gold,172 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 r augustusGene,291 chainDm3,493 chainDm3,539 netDm3,450 netDm3,496 r29 geneMapper,100 r5 chainDm3,9 chainDm3,27 netDm3,9 netDm3,60 random augustusGene,119 raney blastDm2FB,213 uniprot,1960 range uniprot,1809 ranked netDm3,278 raw uniprot,1708 rc chainDm3,541 netDm3,498 rmsk,170 read gold,51 reads gold,22 rearrangement chainDm3,506 netDm3,45 netDm3,182 netDm3,463 recently uniprot,1186 record uniprot,496 xenoRefGene,67 refer genscan,144 uniprot,1827 reference geneMapper,28 geneMapper,90 uniprot,1378 uniprot,1422 xenoRefGene,31 references augustusGene,285 chainDm3,471 geneMapper,85 genscan,152 genscan,179 microsat,113 mrna,422 netDm3,446 rmsk,103 rmsk,303 simpleRepeat,73 uniprot,1984 xenoRefGene,293 reflects rmsk,183 refseq geneMapper,43 geneMapper,79 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,291 regeneron uniprot,1968 region chainDm3,162 netDm3,85 uniprot,312 regions augustusGene,76 chainDm3,96 genscan,48 microsat,14 netDm3,40 simpleRepeat,39 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 related augustusGene,242 uniprot,551 relationship netDm3,344 relative gold,137 netDm3,360 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,106 uniprot,681 remain uniprot,1189 remaining blastDm2FB,199 chainDm3,389 removed uniprot,597 uniprot,1150 reorganizing uniprot,1987 repbase rmsk,81 rmsk,93 rmsk,306 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainDm3,428 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainDm3,420 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 repetitive rmsk,315 uniprot,1400 represent chainDm3,94 chainDm3,123 netDm3,132 netDm3,137 represented rmsk,49 reproducibility uniprot,1645 required blastDm2FB,201 res chainDm3,551 microsat,127 mrna,437 mrna,457 netDm3,508 simpleRepeat,87 uniprot,1999 xenoRefGene,302 research rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 result chainDm3,136 uniprot,798 uniprot,1065 uniprot,1170 resulting chainDm3,302 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,144 review xenoRefGene,64 reviewed xenoRefGene,74 riestra uniprot,1972 rna rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,233 xenoRefGene,279 rnas xenoRefGene,210 robert chainDm3,466 role uniprot,309 rolling rmsk,171 ross chainDm3,417 netDm3,444 rrna rmsk,162 run chainDm3,357 s augustusGene,104 augustusGene,221 augustusGene,319 blastDm2FB,146 chainDm3,501 chainDm3,518 chainDm3,531 geneMapper,64 geneMapper,87 genscan,190 genscan,194 genscan,210 netDm3,458 netDm3,475 netDm3,488 rmsk,18 rmsk,252 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same netDm3,211 netDm3,226 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 santa chainDm3,441 netDm3,419 satellite rmsk,155 scaffold gold,108 gold,151 scaffolds gap,16 gold,33 scheib uniprot,2012 schwartz chainDm3,408 chainDm3,530 netDm3,435 netDm3,487 sci chainDm3,516 netDm3,473 science genscan,203 scientific uniprot,37 scientists mrna,420 xenoRefGene,284 score uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainDm3,37 chainDm3,47 chainDm3,365 chainDm3,382 chainDm3,478 scott chainDm3,407 netDm3,434 screens rmsk,22 script uniprot,1549 scrna rmsk,164 search blastDm2FB,181 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 rmsk,104 uniprot,897 sections netDm3,301 see augustusGene,42 blastDm2FB,167 genscan,57 microsat,101 rmsk,278 simpleRepeat,63 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,200 select genscan,90 xenoRefGene,162 selected mrna,231 mrna,247 mrna,300 uniprot,986 selecting microsat,60 semi-markov augustusGene,117 sep chainDm3,521 netDm3,478 rmsk,320 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 blastDm2FB,47 blastDm2FB,89 chainDm3,130 chainDm3,481 mrna,336 mrna,397 mrna,410 mrna,417 netDm3,49 rmsk,48 rmsk,62 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 xenoRefGene,268 xenoRefGene,280 sequenced geneMapper,32 sequences blastDm2FB,77 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,32 sequencing gap,6 gc5Base,10 gold,7 netDm3,383 server uniprot,1699 uniprot,1745 set blastDm2FB,161 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 sf blastDm2FB,169 shaded mrna,51 shading rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 uniprot,460 uniprot,978 shotgun gold,21 gold,175 should mrna,267 show uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown gold,129 microsat,48 mrna,96 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainDm3,18 gc5Base,16 geneMapper,13 genscan,13 gold,11 mrna,16 netDm3,18 uniprot,14 uniprot,484 xenoRefGene,14 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 similar uniprot,1403 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainDm3,61 since uniprot,1383 sine rmsk,128 single blastDm2FB,114 chainDm3,88 chainDm3,97 chainDm3,326 chainDm3,332 mrna,361 uniprot,141 xenoRefGene,232 single-lined chainDm3,171 site genscan,157 sites augustusGene,54 augustusGene,59 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size blastDm2FB,108 gap,56 gap,59 gold,78 gold,81 sizes gold,45 smit chainDm3,425 chainDm3,534 netDm3,491 rmsk,17 rmsk,288 snrna rmsk,163 so gold,152 netDm3,124 uniprot,1135 uniprot,1430 soft-masked rmsk,264 software rmsk,221 some mrna,104 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sorted netDm3,270 uniprot,556 sourav geneMapper,108 source uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 space uniprot,1990 spaces gold,127 span netDm3,83 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainDm3,78 chainDm3,133 chainDm3,152 netDm3,389 species-specific augustusGene,156 specific mrna,143 simpleRepeat,53 splice augustusGene,53 genscan,156 uniprot,144 splicing augustusGene,123 genscan,33 genscan,186 staff uniprot,42 uniprot,1965 stage uniprot,1228 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 uniprot,125 uniprot,209 uniprot,1821 state chainDm3,402 netDm3,429 statistical augustusGene,47 stdout uniprot,1825 stefanie augustusGene,267 step uniprot,901 uniprot,1155 uniprot,1330 storage chainDm3,459 stored uniprot,1733 strand chainDm3,207 strands uniprot,365 strategy uniprot,1120 uniprot,1193 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying netDm3,43 subcellular uniprot,553 submitted mrna,412 submodel augustusGene,331 subsections chainDm3,347 subset microsat,54 mrna,82 substantial chainDm3,129 substituted gap,65 gold,87 subtrack uniprot,411 subtracks uniprot,59 uniprot,72 uniprot,520 uniprot,548 such netDm3,350 uniprot,306 suffix uniprot,1255 suitable uniprot,1868 supercontigs gap,21 gold,38 suppl augustusGene,336 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainDm3,484 syn netDm3,207 syntenic netDm3,357 syntenically augustusGene,297 system chainDm3,38 uniprot,1353 uniprot,1784 systems chainDm3,48 t-100-25-9091 chainDm3,380 table augustusGene,225 mrna,168 mrna,171 mrna,190 uniprot,1720 tables uniprot,1301 taken xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task mrna,110 tblastn blastDm2FB,12 blastDm2FB,21 blastDm2FB,92 blastDm2FB,153 uniprot,1476 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term mrna,117 terminal rmsk,138 terms mrna,161 text mrna,124 mrna,164 mrna,204 uniprot,1763 than blastDm2FB,121 chainDm3,43 mrna,218 netDm3,196 rmsk,237 xenoRefGene,23 xenoRefGene,226 thanks augustusGene,248 geneMapper,106 genscan,170 rmsk,285 uniprot,1974 that blastDm2FB,78 blastDm2FB,131 chainDm3,39 chainDm3,101 chainDm3,127 chainDm3,277 genscan,141 gold,102 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 netDm3,82 netDm3,104 netDm3,320 netDm3,331 rmsk,42 rmsk,231 rmsk,239 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastDm2FB,24 blastDm2FB,27 blastDm2FB,34 blastDm2FB,44 blastDm2FB,53 blastDm2FB,61 blastDm2FB,66 blastDm2FB,74 blastDm2FB,86 blastDm2FB,91 blastDm2FB,95 blastDm2FB,113 blastDm2FB,124 blastDm2FB,136 blastDm2FB,144 blastDm2FB,157 blastDm2FB,198 chainDm3,30 chainDm3,79 chainDm3,92 chainDm3,109 chainDm3,117 chainDm3,164 chainDm3,168 chainDm3,194 chainDm3,200 chainDm3,205 chainDm3,213 chainDm3,225 chainDm3,240 chainDm3,246 chainDm3,249 chainDm3,264 chainDm3,270 chainDm3,274 chainDm3,289 chainDm3,301 chainDm3,310 chainDm3,313 chainDm3,345 chainDm3,350 chainDm3,359 chainDm3,363 chainDm3,370 chainDm3,388 chainDm3,430 chainDm3,436 chainDm3,454 chainDm3,461 chainDm3,508 gap,15 gap,27 gap,31 gap,46 gap,50 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 geneMapper,46 geneMapper,67 geneMapper,82 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,53 gold,68 gold,72 gold,100 gold,105 gold,114 gold,131 gold,136 gold,142 gold,159 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,353 mrna,356 mrna,367 mrna,370 mrna,386 mrna,395 mrna,401 mrna,414 mrna,452 netDm3,19 netDm3,30 netDm3,46 netDm3,56 netDm3,72 netDm3,78 netDm3,92 netDm3,110 netDm3,127 netDm3,130 netDm3,135 netDm3,148 netDm3,161 netDm3,163 netDm3,170 netDm3,173 netDm3,180 netDm3,186 netDm3,199 netDm3,210 netDm3,214 netDm3,217 netDm3,225 netDm3,229 netDm3,235 netDm3,246 netDm3,249 netDm3,260 netDm3,264 netDm3,272 netDm3,276 netDm3,280 netDm3,288 netDm3,333 netDm3,343 netDm3,362 netDm3,365 netDm3,377 netDm3,401 netDm3,406 netDm3,415 netDm3,465 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 simpleRepeat,60 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,189 xenoRefGene,202 xenoRefGene,209 xenoRefGene,214 xenoRefGene,238 xenoRefGene,241 xenoRefGene,257 xenoRefGene,266 xenoRefGene,289 xenoRefGene,297 their uniprot,62 uniprot,723 uniprot,1101 them netDm3,295 rmsk,277 uniprot,20 uniprot,173 uniprot,483 then chainDm3,356 netDm3,284 netDm3,369 uniprot,1083 uniprot,1516 there uniprot,705 uniprot,1092 therefore uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainDm3,62 chainDm3,368 geneMapper,34 geneMapper,119 microsat,24 netDm3,97 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 uniprot,99 uniprot,130 uniprot,1160 they chainDm3,236 uniprot,179 this augustusGene,13 augustusGene,106 augustusGene,224 blastDm2FB,18 blastDm2FB,204 chainDm3,16 chainDm3,134 chainDm3,394 gap,8 gap,24 gc5Base,38 gc5Base,77 geneMapper,11 genscan,11 genscan,65 genscan,128 gold,9 gold,97 gold,164 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 netDm3,16 netDm3,52 netDm3,84 netDm3,310 rmsk,10 rmsk,51 rmsk,114 rmsk,301 simpleRepeat,12 simpleRepeat,31 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,181 xenoRefGene,206 xenoRefGene,272 those microsat,62 mrna,306 rmsk,238 uniprot,729 xenoRefGene,220 thousands chainDm3,211 three uniprot,1227 three-step uniprot,989 threshold chainDm3,385 through rmsk,268 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time netDm3,293 tissue mrna,153 mrna,188 mrna,203 tissues mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastDm2FB,43 blastDm2FB,69 blastDm2FB,202 chainDm3,29 chainDm3,105 chainDm3,176 chainDm3,188 chainDm3,227 chainDm3,238 chainDm3,243 chainDm3,255 chainDm3,261 chainDm3,284 chainDm3,361 gc5Base,48 geneMapper,30 geneMapper,45 geneMapper,75 geneMapper,81 geneMapper,107 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,157 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,413 netDm3,143 netDm3,157 netDm3,241 netDm3,286 netDm3,298 netDm3,338 netDm3,361 netDm3,371 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 simpleRepeat,81 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,199 together blastDm2FB,102 chainDm3,85 tolerate chainDm3,52 tolerated uniprot,1257 tool blastDm2FB,160 blastDm2FB,182 mrna,455 uniprot,1766 uniprot,1797 xenoRefGene,300 tools rmsk,294 uniprot,1873 top netDm3,198 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level netDm3,73 netDm3,93 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 blastDm2FB,19 blastDm2FB,57 blastDm2FB,205 chainDm3,17 chainDm3,81 chainDm3,257 chainDm3,395 gap,9 gc5Base,15 gc5Base,39 geneMapper,12 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,98 gold,165 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,403 netDm3,17 rmsk,11 rmsk,52 rmsk,115 rmsk,302 simpleRepeat,13 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,273 tracks augustusGene,41 genscan,56 genscan,74 mrna,40 netDm3,266 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,56 traditional chainDm3,44 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcript uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptional genscan,28 transcripts augustusGene,124 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 transfer geneMapper,76 transferring geneMapper,21 geneMapper,40 translation augustusGene,57 translational genscan,29 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposons netDm3,396 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming netDm3,294 trna rmsk,161 true augustusGene,132 turn chainDm3,244 xenoRefGene,133 turns uniprot,370 two netDm3,402 uniprot,71 uniprot,630 uniprot,1641 type gap,76 gold,169 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 mrna,194 netDm3,194 uniprot,676 typically gc5Base,33 u chainDm3,517 geneMapper,114 netDm3,474 ucb geneMapper,5 ucsc mrna,407 rmsk,211 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,277 undergone xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath netDm3,330 unexpected uniprot,766 ungapped netDm3,133 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 universal uniprot,1993 university chainDm3,403 chainDm3,437 netDm3,416 netDm3,430 unknown rmsk,173 unprocessed chainDm3,191 unsequenced chainDm3,148 up blastDm2FB,80 gold,104 rmsk,117 update mrna,434 rmsk,82 rmsk,94 rmsk,307 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use gold,115 mrna,112 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainDm3,374 geneMapper,71 genscan,159 mrna,69 mrna,210 mrna,269 netDm3,50 netDm3,285 netDm3,337 netDm3,370 rmsk,213 rmsk,258 rmsk,298 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful microsat,20 netDm3,36 netDm3,167 user mrna,328 users uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastDm2FB,65 blastDm2FB,90 blastDm2FB,103 chainDm3,34 chainDm3,309 gap,45 geneMapper,61 gold,67 microsat,90 mrna,355 netDm3,259 rmsk,15 rmsk,249 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,218 utilities blastDm2FB,200 utrs geneMapper,25 v3.1 augustusGene,7 valid mrna,160 validate xenoRefGene,153 validation genscan,107 value mrna,220 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 rmsk,6 simpleRepeat,8 uniprot,438 variety gc5Base,45 various uniprot,50 vb chainDm3,475 version augustusGene,23 augustusGene,263 rmsk,58 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 rmsk,217 rmsk,233 uniprot,1655 vertebrates augustusGene,209 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view mrna,156 netDm3,144 viewed gold,107 visible uniprot,147 w blastDm2FB,171 blastDm2FB,173 chainDm3,477 chainDm3,497 chainDm3,545 gold,171 netDm3,454 netDm3,502 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastDm2FB,193 chainDm3,355 chainDm3,373 chainDm3,398 chainDm3,433 gap,33 gap,64 geneMapper,70 gold,55 gold,86 microsat,108 mrna,374 mrna,404 netDm3,283 netDm3,328 netDm3,336 netDm3,356 netDm3,368 netDm3,393 netDm3,425 rmsk,12 simpleRepeat,68 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 xenoRefGene,245 xenoRefGene,274 way uniprot,1459 ways gc5Base,47 we uniprot,1224 uniprot,1453 uniprot,1859 webb chainDm3,412 chainDm3,449 netDm3,439 weekly xenoRefGene,42 well augustusGene,78 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastDm2FB,58 blastDm2FB,83 blastDm2FB,100 blastDm2FB,127 blastDm2FB,149 blastDm2FB,206 chainDm3,297 chainDm3,304 chainDm3,316 chainDm3,386 chainDm3,421 chainDm3,463 gc5Base,79 geneMapper,59 gold,23 gold,30 mrna,350 mrna,398 netDm3,254 netDm3,412 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,211 xenoRefGene,228 xenoRefGene,269 wget uniprot,1903 uniprot,1913 wheeler mrna,431 when augustusGene,188 augustusGene,238 mrna,92 mrna,102 mrna,359 netDm3,95 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,230 where chainDm3,155 gap,49 gold,27 gold,71 gold,122 uniprot,1192 whether netDm3,352 which augustusGene,159 augustusGene,227 chainDm3,234 chainDm3,320 mrna,179 netDm3,317 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 uniprot,158 uniprot,1380 uniprot,1768 while chainDm3,179 whole geneMapper,51 gold,173 netDm3,152 whole-genome gold,20 wildcards mrna,206 will mrna,239 mrna,257 mrna,286 mrna,303 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 windows gc5Base,7 gc5Base,28 wish mrna,181 xenoRefGene,198 with augustusGene,127 augustusGene,322 blastDm2FB,60 blastDm2FB,85 chainDm3,170 chainDm3,181 chainDm3,299 chainDm3,414 chainDm3,446 chainDm3,548 gc5Base,35 geneMapper,93 gold,40 microsat,69 microsat,76 mrna,394 netDm3,271 netDm3,395 netDm3,441 netDm3,505 rmsk,195 simpleRepeat,52 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 xenoRefGene,221 xenoRefGene,265 within gold,149 gold,163 mrna,85 mrna,383 simpleRepeat,37 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,84 xenoRefGene,254 without uniprot,139 wj chainDm3,491 chainDm3,533 mrna,450 netDm3,448 netDm3,490 xenoRefGene,295 words uniprot,1201 worldwide mrna,421 xenoRefGene,285 written blastDm2FB,194 blastDm2FB,207 genscan,19 microsat,109 simpleRepeat,69 x uniprot,1923 xml uniprot,1510 yap chainDm3,474 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you mrna,180 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,197 your uniprot,1783 z chainDm3,537 netDm3,494 zebrafish augustusGene,202 augustusGene,278 zhang chainDm3,410 chainDm3,536 netDm3,437 netDm3,493 zheng chainDm3,409 netDm3,436 zinc uniprot,326 zoomed-in genscan,103