0 uniprot,1822 0.2 augustusGene,136 0.5 augustusGene,138 est,670 intronEst,745 mrna,384 xenoRefGene,255 000 est,630 gcPercent,30 intronEst,705 000-base gcPercent,7 1 augustusGene,310 chainDm6,410 chainDm6,541 chainDm6,735 chainDm6,1134 chainNetDm6,413 chainNetDm6,544 chainNetDm6,738 chainNetDm6,1137 est,728 genscan,227 intronEst,803 mrna,440 netDm6,410 netDm6,541 netDm6,735 netDm6,1134 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoMrna,458 xenoMrna,514 1.0 gold,93 10 geneid,192 uniprot,1928 100 augustusGene,134 chainDm6,1102 chainNetDm6,1105 microsat,70 netDm6,1102 1000 gap,133 1000-2000 augustusGene,161 1000000 uniprot,1824 103-7 chainDm6,1135 chainNetDm6,1138 netDm6,1135 10779490 geneid,196 10973072 rmsk,325 11 chainDm6,731 chainDm6,738 chainNetDm6,734 chainNetDm6,741 netDm6,731 netDm6,738 1100 chainDm6,752 chainDm6,764 chainNetDm6,755 chainNetDm6,767 netDm6,752 netDm6,764 111 chainDm6,733 chainDm6,739 chainNetDm6,736 chainNetDm6,742 netDm6,733 netDm6,739 11484-9 chainDm6,1104 chainNetDm6,1107 netDm6,1104 115-26 chainDm6,1066 chainNetDm6,1069 netDm6,1066 11928468 chainDm6,1068 chainNetDm6,1071 netDm6,1068 11932250 est,752 intronEst,827 mrna,464 xenoMrna,537 xenoRefGene,309 12 est,748 intronEst,823 mrna,460 xenoMrna,533 xenoRefGene,305 12111 chainDm6,741 chainNetDm6,744 netDm6,741 12529312 chainDm6,1137 chainNetDm6,1140 netDm6,1137 127-163 genscan,206 13 chainDm6,1133 chainNetDm6,1136 netDm6,1133 1400 chainDm6,776 chainNetDm6,779 netDm6,776 14500911 chainDm6,1106 chainNetDm6,1109 netDm6,1106 14534192 augustusGene,340 14681350 est,734 intronEst,809 mrna,446 xenoMrna,520 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,227 15108278 uniprot,2051 152111 chainDm6,744 chainNetDm6,747 netDm6,744 15600 chainDm6,755 chainDm6,767 chainNetDm6,758 chainNetDm6,770 netDm6,755 netDm6,767 16 rmsk,321 16000 chainDm6,779 chainNetDm6,782 netDm6,779 18218656 augustusGene,315 18428791 geneid,177 19 augustusGene,335 1976 gold,191 1990 blastDm2FB,185 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 1x gold,207 gold,228 2 augustusGene,142 augustusGene,337 chainDm6,444 chainDm6,449 chainDm6,736 chainNetDm6,447 chainNetDm6,452 chainNetDm6,739 microsat,66 microsat,132 netDm6,444 netDm6,449 netDm6,736 simpleRepeat,92 uniprot,1121 uniprot,1331 2-3 uniprot,1572 20 chainDm6,1103 chainNetDm6,1106 gcPercent,6 gcPercent,29 netDm6,1103 2000 geneid,190 rmsk,100 rmsk,319 2002 chainDm6,1065 chainNetDm6,1068 est,746 intronEst,821 mrna,458 netDm6,1065 xenoMrna,531 xenoRefGene,303 2003 augustusGene,333 chainDm6,1099 chainDm6,1131 chainNetDm6,1102 chainNetDm6,1134 netDm6,1099 netDm6,1131 2004 blastDm2FB,7 est,726 intronEst,801 mrna,438 uniprot,2045 xenoMrna,512 2005 blastDm2FB,41 2007 chainDm6,1038 chainNetDm6,1041 geneid,170 netDm6,1038 2008 augustusGene,308 2012 uniprot,2000 2014 chainDm6,7 chainDm6,74 chainDm6,322 chainNetDm6,8 chainNetDm6,77 chainNetDm6,325 chainNetDm6Viewchain,5 chainNetDm6Viewnet,5 netDm6,7 netDm6,74 netDm6,322 2022_03 uniprot,1911 2023 uniprot,1191 2111 chainDm6,740 chainNetDm6,743 netDm6,740 215 blastDm2FB,188 22102590 uniprot,2007 23 uniprot,2047 24 augustusGene,311 243 geneid,160 geneid,183 25 blastDm2FB,39 genscan,225 xenoMrna,465 xenoRefGene,262 250 gap,124 252111 chainDm6,745 chainNetDm6,748 netDm6,745 268 genscan,226 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastDm2FB,189 chainDm6,456 chainDm6,737 chainNetDm6,459 chainNetDm6,740 est,442 est,495 est,549 intronEst,108 intronEst,517 intronEst,570 intronEst,624 microsat,68 netDm6,456 netDm6,737 uniprot,1123 uniprot,1194 xenoMrna,90 3.1 augustusGene,24 30 chainDm6,1101 chainNetDm6,1104 netDm6,1101 3000 chainDm6,709 chainNetDm6,712 netDm6,709 31600 chainDm6,756 chainDm6,768 chainNetDm6,759 chainNetDm6,771 netDm6,756 netDm6,768 32 est,729 intronEst,78 intronEst,804 mrna,441 xenoMrna,515 32000 chainDm6,780 chainNetDm6,783 netDm6,780 32111 chainDm6,742 chainNetDm6,745 netDm6,742 325 chainDm6,747 chainDm6,759 chainNetDm6,750 chainNetDm6,762 netDm6,747 netDm6,759 360 chainDm6,748 chainDm6,760 chainNetDm6,751 chainNetDm6,763 netDm6,748 netDm6,760 3600 chainDm6,753 chainDm6,765 chainNetDm6,756 chainNetDm6,768 netDm6,753 netDm6,765 4 est,749 geneid,173 geneid,193 intronEst,824 mrna,461 xenoMrna,534 xenoRefGene,306 4.3 geneid,175 40 uniprot,2002 400 chainDm6,749 chainDm6,761 chainNetDm6,752 chainNetDm6,764 netDm6,749 netDm6,761 4000 chainDm6,777 chainNetDm6,780 netDm6,777 403-410 blastDm2FB,190 418-20 rmsk,323 450 chainDm6,750 chainDm6,762 chainNetDm6,753 chainNetDm6,765 netDm6,750 netDm6,762 464-70 uniprot,2049 4x gold,129 gold,211 5 augustusGene,312 blastDm2FB,187 est,439 est,480 est,506 intronEst,514 intronEst,555 intronEst,581 uniprot,2048 xenoMrna,88 500 est,35 intronEst,46 511-5 geneid,194 56600 chainDm6,757 chainDm6,769 chainNetDm6,760 chainNetDm6,772 netDm6,757 netDm6,769 57000 chainDm6,781 chainNetDm6,784 netDm6,781 573-80 microsat,133 simpleRepeat,93 6 chainDm6,10 chainDm6,77 chainDm6,325 chainNetDm6,11 chainNetDm6,80 chainNetDm6,328 chainNetDm6Viewchain,8 chainNetDm6Viewnet,8 netDm6,10 netDm6,77 netDm6,325 60 blastDm2FB,121 blastDm2FB,133 blastDm2FB,141 600 chainDm6,751 chainDm6,763 chainNetDm6,754 chainNetDm6,766 netDm6,751 netDm6,763 625 chainDm6,771 chainNetDm6,774 netDm6,771 637-44 augustusGene,313 656-64 est,750 intronEst,825 mrna,462 xenoMrna,535 xenoRefGene,307 660 chainDm6,772 chainNetDm6,775 netDm6,772 700 chainDm6,773 chainNetDm6,776 netDm6,773 72111 chainDm6,743 chainNetDm6,746 netDm6,743 750 chainDm6,774 chainNetDm6,777 est,629 intronEst,704 netDm6,774 7600 chainDm6,754 chainDm6,766 chainNetDm6,757 chainNetDm6,769 netDm6,754 netDm6,766 78-94 genscan,228 8000 chainDm6,778 chainNetDm6,781 netDm6,778 9 rmsk,322 900 chainDm6,775 chainNetDm6,778 netDm6,775 9149143 genscan,230 93 uniprot,1483 96 est,677 intronEst,752 mrna,391 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainDm6,87 chainDm6,158 chainDm6,212 chainDm6,476 chainDm6,486 chainDm6,490 chainDm6,557 chainDm6,574 chainDm6,577 chainDm6,645 chainDm6,651 chainDm6,657 chainDm6,661 chainDm6,672 chainDm6,704 chainDm6,823 chainDm6,837 chainDm6,843 chainDm6,849 chainDm6,853 chainDm6,856 chainDm6,884 chainDm6,1074 chainDm6,1098 chainDm6,1114 chainNetDm6,90 chainNetDm6,161 chainNetDm6,215 chainNetDm6,479 chainNetDm6,489 chainNetDm6,493 chainNetDm6,560 chainNetDm6,577 chainNetDm6,580 chainNetDm6,648 chainNetDm6,654 chainNetDm6,660 chainNetDm6,664 chainNetDm6,675 chainNetDm6,707 chainNetDm6,826 chainNetDm6,840 chainNetDm6,846 chainNetDm6,852 chainNetDm6,856 chainNetDm6,859 chainNetDm6,887 chainNetDm6,1077 chainNetDm6,1101 chainNetDm6,1117 est,118 est,135 est,170 est,196 est,377 est,429 est,433 est,559 est,585 est,593 est,646 est,665 gap,62 gap,66 gap,121 gap,130 gcPercent,28 geneid,52 geneid,63 geneid,114 genscan,102 genscan,132 gold,70 gold,79 gold,83 gold,115 gold,220 gold,253 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,504 intronEst,508 intronEst,634 intronEst,660 intronEst,668 intronEst,721 intronEst,740 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,360 mrna,379 netDm6,87 netDm6,158 netDm6,212 netDm6,476 netDm6,486 netDm6,490 netDm6,557 netDm6,574 netDm6,577 netDm6,645 netDm6,651 netDm6,657 netDm6,661 netDm6,672 netDm6,704 netDm6,823 netDm6,837 netDm6,843 netDm6,849 netDm6,853 netDm6,856 netDm6,884 netDm6,1074 netDm6,1098 netDm6,1114 rmsk,36 rmsk,56 rmsk,196 rmsk,308 simpleRepeat,79 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 xenoMrna,109 xenoMrna,138 xenoMrna,155 xenoMrna,190 xenoMrna,216 xenoMrna,397 xenoMrna,433 xenoMrna,453 xenoRefGene,231 xenoRefGene,250 a91-90-25-100 chainDm6,697 chainNetDm6,700 netDm6,697 aa unipModif,1 ab augustusGene,3 augustusGene,16 abbreviated chainDm6,608 chainNetDm6,611 netDm6,608 about chainDm6,482 chainDm6,495 chainDm6,873 chainNetDm6,485 chainNetDm6,498 chainNetDm6,876 est,34 est,403 genscan,127 intronEst,45 intronEst,478 microsat,98 mrna,340 netDm6,482 netDm6,495 netDm6,873 simpleRepeat,59 xenoMrna,414 xenoRefGene,180 above chainDm6,554 chainDm6,566 chainDm6,586 chainNetDm6,557 chainNetDm6,569 chainNetDm6,589 netDm6,554 netDm6,566 netDm6,586 uniprot,1525 abundance chainDm6,194 chainNetDm6,197 netDm6,194 acad chainDm6,1094 chainNetDm6,1097 netDm6,1094 acceptor genscan,32 access uniprot,896 uniprot,1706 uniprot,1838 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 acgt chainDm6,696 chainNetDm6,699 netDm6,696 acid blastDm2FB,75 unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids blastDm2FB,147 est,724 intronEst,799 microsat,126 mrna,436 simpleRepeat,86 uniprot,620 uniprot,1998 xenoMrna,510 acronym uniprot,546 added chainDm6,618 chainNetDm6,621 netDm6,618 uniprot,1187 additional rmsk,254 admin uniprot,1917 advice chainDm6,959 chainDm6,991 chainNetDm6,962 chainNetDm6,994 netDm6,959 netDm6,991 affine chainDm6,97 chainNetDm6,100 netDm6,97 after chainDm6,931 chainNetDm6,934 netDm6,931 uniprot,294 uniprot,1329 ag intronEst,85 again uniprot,629 uniprot,1500 against est,614 intronEst,37 intronEst,689 mrna,333 mrna,352 xenoMrna,407 xenoMrna,424 xenoRefGene,213 aka gold,31 alejo uniprot,1966 algorithm augustusGene,130 algorithms uniprot,52 align chainDm6,210 chainNetDm6,213 est,644 intronEst,719 netDm6,210 uniprot,1216 alignable chainDm6,28 chainDm6,44 chainNetDm6,31 chainNetDm6,47 netDm6,28 netDm6,44 aligned blastDm2FB,58 blastDm2FB,83 chainDm6,611 chainNetDm6,614 est,613 est,649 intronEst,36 intronEst,149 intronEst,688 intronEst,724 mrna,351 mrna,363 netDm6,611 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoMrna,423 xenoMrna,436 xenoRefGene,212 xenoRefGene,234 aligning chainDm6,147 chainDm6,354 chainDm6,384 chainNetDm6,150 chainNetDm6,357 chainNetDm6,387 est,389 intronEst,464 netDm6,147 netDm6,354 netDm6,384 uniprot,952 alignment blastDm2FB,179 chainDm6,274 chainDm6,1041 chainNetDm6,277 chainNetDm6,1044 est,58 est,654 est,742 gold,151 intronEst,136 intronEst,729 intronEst,817 mrna,39 mrna,368 mrna,454 netDm6,14 netDm6,274 netDm6,1041 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoMrna,43 xenoMrna,441 xenoMrna,527 xenoRefGene,223 xenoRefGene,239 xenoRefGene,299 alignments augustusGene,300 blastDm2FB,21 chainDm6,15 chainDm6,69 chainDm6,469 chainDm6,623 chainDm6,635 chainDm6,643 chainDm6,671 chainDm6,789 chainDm6,1061 chainDm6,1126 chainNetDm6,18 chainNetDm6,72 chainNetDm6,472 chainNetDm6,626 chainNetDm6,638 chainNetDm6,646 chainNetDm6,674 chainNetDm6,792 chainNetDm6,1064 chainNetDm6,1129 chainNetDm6Viewchain,15 chainNetDm6Viewnet,15 est,16 est,663 intronEst,17 intronEst,738 mrna,17 mrna,377 netDm6,69 netDm6,469 netDm6,623 netDm6,635 netDm6,643 netDm6,671 netDm6,789 netDm6,1061 netDm6,1126 rmsk,265 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoMrna,17 xenoMrna,451 xenoRefGene,248 all augustusGene,207 chainDm6,642 chainNetDm6,645 est,192 est,246 est,290 est,385 est,449 gap,136 gold,278 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,524 mrna,138 mrna,192 mrna,236 netDm6,642 rmsk,65 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 xenoMrna,212 xenoMrna,266 xenoMrna,310 allowed est,625 intronEst,700 allows augustusGene,168 chainDm6,92 chainNetDm6,95 est,380 intronEst,455 mrna,326 netDm6,92 xenoMrna,400 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along geneid,80 already chainDm6,834 chainNetDm6,837 gold,183 netDm6,834 also blastDm2FB,149 chainDm6,103 chainNetDm6,106 est,262 est,370 est,562 intronEst,337 intronEst,445 intronEst,637 mrna,208 mrna,316 netDm6,103 uniprot,666 uniprot,706 uniprot,1799 xenoMrna,282 xenoMrna,390 alt uniprot,850 alter est,129 intronEst,204 mrna,75 xenoMrna,149 alternating gold,49 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 altschul blastDm2FB,167 alus rmsk,131 always uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 xenoMrna,87 amino blastDm2FB,74 blastDm2FB,146 unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,185 amsterdam genscan,201 an blastDm2FB,103 chainDm6,166 chainDm6,193 chainDm6,199 chainNetDm6,169 chainNetDm6,196 chainNetDm6,202 est,411 est,458 est,541 gold,128 intronEst,61 intronEst,486 intronEst,533 intronEst,616 netDm6,166 netDm6,193 netDm6,199 rmsk,311 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,222 analysis uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 anchored gold,146 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastDm2FB,13 blastDm2FB,28 blastDm2FB,137 chainDm6,110 chainDm6,125 chainDm6,242 chainDm6,250 chainDm6,264 chainDm6,305 chainDm6,332 chainDm6,458 chainDm6,614 chainDm6,650 chainDm6,659 chainDm6,800 chainDm6,878 chainDm6,910 chainDm6,921 chainDm6,930 chainDm6,955 chainDm6,970 chainDm6,995 chainDm6,1001 chainDm6,1007 chainDm6,1014 chainDm6,1020 chainDm6,1084 chainDm6,1089 chainNetDm6,16 chainNetDm6,113 chainNetDm6,128 chainNetDm6,245 chainNetDm6,253 chainNetDm6,267 chainNetDm6,308 chainNetDm6,335 chainNetDm6,461 chainNetDm6,617 chainNetDm6,653 chainNetDm6,662 chainNetDm6,803 chainNetDm6,881 chainNetDm6,913 chainNetDm6,924 chainNetDm6,933 chainNetDm6,958 chainNetDm6,973 chainNetDm6,998 chainNetDm6,1004 chainNetDm6,1010 chainNetDm6,1017 chainNetDm6,1023 chainNetDm6,1087 chainNetDm6,1092 chainNetDm6Viewchain,13 chainNetDm6Viewnet,13 est,10 est,26 est,48 est,88 est,132 est,282 est,418 est,432 est,440 est,568 est,674 gap,5 gap,47 gap,65 gap,99 gap,107 gap,117 gap,128 gcPercent,10 gcPercent,23 geneid,7 geneid,73 geneid,78 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,51 gold,66 gold,148 gold,189 gold,202 gold,223 gold,265 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,493 intronEst,507 intronEst,515 intronEst,643 intronEst,749 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,388 netDm6,110 netDm6,125 netDm6,242 netDm6,250 netDm6,264 netDm6,305 netDm6,332 netDm6,458 netDm6,614 netDm6,650 netDm6,659 netDm6,800 netDm6,878 netDm6,910 netDm6,921 netDm6,930 netDm6,955 netDm6,970 netDm6,995 netDm6,1001 netDm6,1007 netDm6,1014 netDm6,1020 netDm6,1084 netDm6,1089 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 simpleRepeat,9 simpleRepeat,42 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 xenoMrna,9 xenoMrna,20 xenoMrna,33 xenoMrna,152 xenoMrna,302 xenoMrna,462 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,191 xenoRefGene,259 xenoRefGene,286 annot unipOther,2 annotated rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation chainDm6,317 chainNetDm6,320 netDm6,317 rmsk,38 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations genscan,120 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 anonymous geneid,58 any est,305 est,511 intronEst,380 intronEst,586 mrna,251 uniprot,660 uniprot,1146 uniprot,1250 xenoMrna,325 apply est,188 intronEst,263 mrna,134 xenoMrna,208 approach uniprot,1531 appropriate xenoRefGene,112 approximate gap,94 apr blastDm2FB,6 est,747 geneid,191 genscan,224 intronEst,822 mrna,459 xenoMrna,532 xenoRefGene,304 archive uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are augustusGene,27 chainDm6,27 chainDm6,46 chainDm6,59 chainDm6,154 chainDm6,225 chainDm6,236 chainDm6,343 chainDm6,412 chainDm6,433 chainDm6,440 chainDm6,523 chainDm6,716 chainNetDm6,30 chainNetDm6,49 chainNetDm6,62 chainNetDm6,157 chainNetDm6,228 chainNetDm6,239 chainNetDm6,346 chainNetDm6,415 chainNetDm6,436 chainNetDm6,443 chainNetDm6,526 chainNetDm6,719 est,30 est,67 est,149 est,159 est,684 gap,35 gap,88 gcPercent,38 geneid,76 geneid,90 geneid,96 genscan,25 genscan,160 gold,43 gold,61 gold,283 intronEst,41 intronEst,224 intronEst,234 intronEst,759 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netDm6,27 netDm6,46 netDm6,59 netDm6,154 netDm6,225 netDm6,236 netDm6,343 netDm6,412 netDm6,433 netDm6,440 netDm6,523 netDm6,716 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoMrna,52 xenoMrna,118 xenoMrna,169 xenoMrna,179 xenoRefGene,40 xenoRefGene,105 xenoRefGene,194 areas gcPercent,56 arian chainDm6,968 chainNetDm6,971 netDm6,968 rmsk,16 rmsk,287 arrays geneid,86 as augustusGene,77 augustusGene,79 blastDm2FB,37 chainDm6,485 chainDm6,525 chainDm6,548 chainDm6,563 chainDm6,827 chainDm6,882 chainDm6,940 chainNetDm6,488 chainNetDm6,528 chainNetDm6,551 chainNetDm6,566 chainNetDm6,830 chainNetDm6,885 chainNetDm6,943 est,558 gap,37 geneid,98 genscan,35 genscan,37 gold,219 gold,259 intronEst,633 microsat,21 netDm6,485 netDm6,525 netDm6,548 netDm6,563 netDm6,827 netDm6,882 netDm6,940 rmsk,53 rmsk,55 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 xenoMrna,125 xenoMrna,130 ascii uniprot,1762 ashburner gold,190 assembled geneid,131 geneid,140 gold,39 gold,205 assemblies augustusGene,196 augustusGene,237 chainDm6,342 chainDm6,606 chainNetDm6,345 chainNetDm6,609 gap,33 gold,229 netDm6,342 netDm6,606 assembly augustusGene,197 chainDm6,164 chainDm6,172 chainDm6,329 chainNetDm6,167 chainNetDm6,175 chainNetDm6,332 gap,14 gap,79 gold,1 gold,2 gold,14 gold,96 gold,124 gold,133 gold,158 gold,167 gold,175 gold,213 gold,245 gold,251 gold,277 netDm6,164 netDm6,172 netDm6,329 uniprot,445 uniprot,701 associated est,110 gcPercent,53 intronEst,185 rmsk,194 simpleRepeat,51 uniprot,787 at blastDm2FB,139 chainDm6,442 chainDm6,822 chainDm6,944 chainDm6,979 chainDm6,984 chainDm6,1025 chainNetDm6,445 chainNetDm6,825 chainNetDm6,947 chainNetDm6,982 chainNetDm6,987 chainNetDm6,1028 est,510 est,555 est,675 est,694 gcPercent,62 gold,103 intronEst,67 intronEst,76 intronEst,101 intronEst,585 intronEst,630 intronEst,750 intronEst,769 microsat,28 microsat,77 mrna,389 mrna,406 netDm6,442 netDm6,822 netDm6,944 netDm6,979 netDm6,984 netDm6,1025 uniprot,825 uniprot,1946 uniprot,1991 xenoMrna,463 xenoMrna,480 xenoRefGene,93 xenoRefGene,260 xenoRefGene,276 attempt est,542 intronEst,617 aug chainDm6,6 chainDm6,73 chainDm6,321 chainNetDm6,7 chainNetDm6,76 chainNetDm6,324 chainNetDm6Viewchain,4 chainNetDm6Viewnet,4 netDm6,6 netDm6,73 netDm6,321 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 automated uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 uniprot,881 uniprot,1660 uniprot,1981 aware uniprot,1456 axt chainDm6,627 chainDm6,634 chainNetDm6,630 chainNetDm6,637 netDm6,627 netDm6,634 axtchain chainDm6,639 chainDm6,727 chainDm6,975 chainNetDm6,642 chainNetDm6,730 chainNetDm6,978 netDm6,639 netDm6,727 netDm6,975 back chainDm6,619 chainNetDm6,622 netDm6,619 baertsch augustusGene,290 chainDm6,1013 chainDm6,1071 chainDm6,1117 chainNetDm6,1016 chainNetDm6,1074 chainNetDm6,1120 netDm6,1013 netDm6,1071 netDm6,1117 bairoch uniprot,2022 barcelona geneid,46 base est,375 est,658 est,666 est,678 gcPercent,31 intronEst,450 intronEst,733 intronEst,741 intronEst,753 mrna,372 mrna,380 mrna,392 rmsk,187 rmsk,189 rmsk,192 xenoMrna,445 xenoMrna,454 xenoMrna,466 xenoRefGene,243 xenoRefGene,251 xenoRefGene,263 based augustusGene,28 chainDm6,345 chainDm6,371 chainNetDm6,348 chainNetDm6,374 genscan,26 netDm6,345 netDm6,371 uniprot,60 uniprot,727 uniprot,1604 bases est,36 est,386 est,631 gap,125 gap,134 gcPercent,26 intronEst,47 intronEst,79 intronEst,461 intronEst,706 basic blastDm2FB,177 basis uniprot,1570 bdgp blastDm2FB,8 chainDm6,8 chainDm6,75 chainDm6,323 chainNetDm6,9 chainNetDm6,78 chainNetDm6,326 chainNetDm6Viewchain,6 chainNetDm6Viewnet,6 netDm6,8 netDm6,75 netDm6,323 be augustusGene,99 chainDm6,120 chainDm6,452 chainNetDm6,123 chainNetDm6,455 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,490 est,598 gap,25 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,565 intronEst,673 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 netDm6,120 netDm6,452 rmsk,235 rmsk,257 simpleRepeat,44 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoMrna,142 xenoMrna,164 xenoMrna,273 xenoMrna,283 xenoMrna,314 xenoMrna,332 xenoMrna,342 xenoMrna,391 xenoRefGene,88 bears est,94 intronEst,169 because est,590 intronEst,665 uniprot,674 xenoMrna,104 been chainDm6,593 chainNetDm6,596 intronEst,8 netDm6,593 rmsk,70 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainDm6,929 chainNetDm6,932 est,527 intronEst,602 netDm6,929 uniprot,934 began gold,126 below chainDm6,703 chainNetDm6,706 genscan,154 genscan,168 netDm6,703 rmsk,105 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,711 intronEst,786 microsat,102 microsat,112 microsat,114 mrna,423 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,497 best blastDm2FB,114 chainDm6,282 chainDm6,535 chainNetDm6,285 chainNetDm6,538 est,673 intronEst,748 mrna,387 netDm6,282 netDm6,535 uniprot,1074 uniprot,1415 xenoMrna,461 xenoRefGene,258 beta uniprot,364 better est,74 mrna,55 xenoMrna,59 between chainDm6,57 chainDm6,644 chainDm6,876 chainNetDm6,60 chainNetDm6,647 chainNetDm6,879 est,17 est,85 gap,105 gold,63 gold,72 intronEst,18 intronEst,160 mrna,18 netDm6,57 netDm6,644 netDm6,876 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed uniprot,1767 uniprot,1812 binaries uniprot,1791 binary uniprot,1781 biocomput chainDm6,1064 chainNetDm6,1067 netDm6,1064 bioinformatics augustusGene,307 augustusGene,332 geneid,169 biol blastDm2FB,184 genscan,222 biological uniprot,320 biology geneid,27 geneid,146 genscan,200 birds augustusGene,203 black gap,38 gap,73 blanco geneid,155 geneid,180 blast blastDm2FB,158 blastDm2FB,165 uniprot,949 uniprot,1084 uniprot,1115 blast-like est,741 intronEst,816 mrna,453 xenoMrna,526 xenoRefGene,298 blastz chainDm6,941 chainDm6,1128 chainNetDm6,944 chainNetDm6,1131 netDm6,941 netDm6,1128 blat blastDm2FB,66 blastDm2FB,191 est,618 est,627 est,739 intronEst,693 intronEst,702 intronEst,814 mrna,357 mrna,451 xenoMrna,16 xenoMrna,431 xenoRefGene,219 xenoRefGene,296 blat--the xenoMrna,525 blocks chainDm6,50 chainDm6,668 chainDm6,689 chainNetDm6,53 chainNetDm6,671 chainNetDm6,692 gold,68 gold,74 gold,90 netDm6,50 netDm6,668 netDm6,689 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainDm6,107 chainDm6,129 chainDm6,184 chainDm6,919 chainNetDm6,110 chainNetDm6,132 chainNetDm6,187 chainNetDm6,922 netDm6,107 netDm6,129 netDm6,184 netDm6,919 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,188 bothgap chainDm6,770 chainNetDm6,773 netDm6,770 boundaries blastDm2FB,71 gold,42 box chainDm6,395 chainDm6,477 chainNetDm6,398 chainNetDm6,480 est,208 est,219 est,259 gap,74 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netDm6,395 netDm6,477 xenoMrna,228 xenoMrna,239 xenoMrna,279 xenoRefGene,207 boxes chainDm6,135 chainDm6,145 chainDm6,466 chainNetDm6,138 chainNetDm6,148 chainNetDm6,469 est,179 gap,39 intronEst,254 mrna,125 netDm6,135 netDm6,145 netDm6,466 xenoMrna,199 branch-point augustusGene,55 brian blastDm2FB,211 uniprot,1959 bridge gold,88 bridged gap,63 briefly uniprot,778 brown gold,52 gold,67 browser chainDm6,999 chainNetDm6,1002 est,226 est,339 est,356 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 netDm6,999 uniprot,1544 uniprot,1721 xenoMrna,246 xenoMrna,359 xenoMrna,376 browsing uniprot,1662 build uniprot,1552 built augustusGene,51 augustusGene,67 geneid,91 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastDm2FB,108 chainDm6,568 chainNetDm6,571 est,447 est,504 est,557 intronEst,522 intronEst,579 intronEst,632 netDm6,568 rmsk,270 uniprot,638 uniprot,1047 button chainDm6,366 chainNetDm6,369 netDm6,366 by augustusGene,147 augustusGene,266 augustusGene,282 blastDm2FB,194 blastDm2FB,207 chainDm6,122 chainDm6,138 chainDm6,336 chainDm6,399 chainDm6,436 chainDm6,454 chainDm6,836 chainDm6,948 chainDm6,967 chainDm6,987 chainDm6,1011 chainDm6,1032 chainNetDm6,125 chainNetDm6,141 chainNetDm6,339 chainNetDm6,402 chainNetDm6,439 chainNetDm6,457 chainNetDm6,839 chainNetDm6,951 chainNetDm6,970 chainNetDm6,990 chainNetDm6,1014 chainNetDm6,1035 est,457 est,626 est,707 gap,90 geneid,21 genscan,20 genscan,88 genscan,121 gold,45 gold,78 gold,98 gold,150 gold,187 intronEst,87 intronEst,532 intronEst,701 intronEst,782 microsat,110 mrna,419 netDm6,122 netDm6,138 netDm6,336 netDm6,399 netDm6,436 netDm6,454 netDm6,836 netDm6,948 netDm6,967 netDm6,987 netDm6,1011 netDm6,1032 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 xenoMrna,493 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,186 xenoRefGene,283 xenoRefGene,288 c gcPercent,24 genscan,181 genscan,208 c-90100-100-25 chainDm6,698 chainNetDm6,701 netDm6,698 c167.4 gold,197 caenorhabditis augustusGene,212 california chainDm6,983 chainDm6,1029 chainNetDm6,986 chainNetDm6,1032 netDm6,983 netDm6,1029 can augustusGene,98 chainDm6,102 chainDm6,119 chainNetDm6,105 chainNetDm6,122 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 netDm6,102 netDm6,119 simpleRepeat,35 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoMrna,141 xenoMrna,272 xenoRefGene,87 cannot uniprot,1269 canonical intronEst,70 cap-selected est,520 intronEst,595 cap-selection est,529 intronEst,604 cases chainDm6,206 chainDm6,423 chainNetDm6,209 chainNetDm6,426 netDm6,206 netDm6,423 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 catalunya geneid,47 categorized chainDm6,524 chainNetDm6,527 netDm6,524 cauldron chainDm6,1081 chainNetDm6,1084 netDm6,1081 cause chainDm6,506 chainNetDm6,509 netDm6,506 caused chainDm6,121 chainNetDm6,124 netDm6,121 cdna augustusGene,299 est,422 est,425 intronEst,497 intronEst,500 cell uniprot,563 cells est,417 intronEst,492 center gold,102 centre geneid,37 cerevisiae augustusGene,222 certain rmsk,260 chain chainDm6,3 chainDm6,33 chainDm6,63 chainDm6,66 chainDm6,132 chainDm6,287 chainDm6,334 chainDm6,429 chainDm6,484 chainDm6,588 chainDm6,796 chainDm6,839 chainDm6,850 chainDm6,858 chainDm6,863 chainDm6,886 chainDm6,895 chainNetDm6,3 chainNetDm6,15 chainNetDm6,36 chainNetDm6,66 chainNetDm6,69 chainNetDm6,135 chainNetDm6,290 chainNetDm6,337 chainNetDm6,432 chainNetDm6,487 chainNetDm6,591 chainNetDm6,799 chainNetDm6,842 chainNetDm6,853 chainNetDm6,861 chainNetDm6,866 chainNetDm6,889 chainNetDm6,898 chainNetDm6Viewchain,1 chainNetDm6Viewchain,12 chainNetDm6Viewnet,12 netDm6,33 netDm6,63 netDm6,66 netDm6,132 netDm6,287 netDm6,334 netDm6,429 netDm6,484 netDm6,588 netDm6,796 netDm6,839 netDm6,850 netDm6,858 netDm6,863 netDm6,886 netDm6,895 uniprot,290 chained blastDm2FB,100 chainDm6,14 chainnet chainDm6,813 chainDm6,1018 chainNetDm6,816 chainNetDm6,1021 netDm6,813 netDm6,1018 chains blastDm2FB,116 blastDm2FB,129 chainDm6,209 chainDm6,221 chainDm6,232 chainDm6,339 chainDm6,378 chainDm6,411 chainDm6,416 chainDm6,438 chainDm6,450 chainDm6,457 chainDm6,514 chainDm6,686 chainDm6,701 chainDm6,715 chainDm6,784 chainDm6,805 chainDm6,820 chainDm6,880 chainDm6,911 chainDm6,1006 chainNetDm6,212 chainNetDm6,224 chainNetDm6,235 chainNetDm6,342 chainNetDm6,381 chainNetDm6,414 chainNetDm6,419 chainNetDm6,441 chainNetDm6,453 chainNetDm6,460 chainNetDm6,517 chainNetDm6,689 chainNetDm6,704 chainNetDm6,718 chainNetDm6,787 chainNetDm6,808 chainNetDm6,823 chainNetDm6,883 chainNetDm6,914 chainNetDm6,1009 netDm6,209 netDm6,221 netDm6,232 netDm6,339 netDm6,378 netDm6,411 netDm6,416 netDm6,438 netDm6,450 netDm6,457 netDm6,514 netDm6,686 netDm6,701 netDm6,715 netDm6,784 netDm6,805 netDm6,820 netDm6,880 netDm6,911 netDm6,1006 unipChain,1 unipChain,7 uniprot,288 change est,125 intronEst,200 mrna,71 xenoMrna,145 changed uniprot,1382 chapter geneid,172 characteristic est,319 intronEst,394 mrna,265 xenoMrna,339 check chainDm6,361 chainNetDm6,364 netDm6,361 checkbox uniprot,231 chiaromonte chainDm6,1051 chainNetDm6,1054 netDm6,1051 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 est,275 est,314 intronEst,350 intronEst,389 mrna,221 mrna,260 uniprot,657 xenoMrna,295 xenoMrna,334 chosen est,337 intronEst,412 mrna,283 xenoMrna,357 chr4 chainDm6,393 chainNetDm6,396 netDm6,393 chr6 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrom uniprot,1819 chromosome chainDm6,262 chainDm6,348 chainDm6,373 chainDm6,381 chainDm6,391 chainDm6,400 chainDm6,547 chainDm6,562 chainDm6,578 chainDm6,649 chainDm6,655 chainNetDm6,265 chainNetDm6,351 chainNetDm6,376 chainNetDm6,384 chainNetDm6,394 chainNetDm6,403 chainNetDm6,550 chainNetDm6,565 chainNetDm6,581 chainNetDm6,652 chainNetDm6,658 netDm6,262 netDm6,348 netDm6,373 netDm6,381 netDm6,391 netDm6,400 netDm6,547 netDm6,562 netDm6,578 netDm6,649 netDm6,655 uniprot,1416 chromosome-based chainDm6,341 chainNetDm6,344 netDm6,341 chromosomes gap,138 chru gap,127 circle rmsk,172 class rmsk,169 classes rmsk,121 cleaved uniprot,249 click chainDm6,474 chainDm6,488 chainNetDm6,477 chainNetDm6,491 est,406 intronEst,481 mrna,343 netDm6,474 netDm6,488 uniprot,229 uniprot,481 uniprot,1673 xenoMrna,417 xenoRefGene,110 xenoRefGene,175 xenoRefGene,205 clicking uniprot,1633 cloned est,427 intronEst,502 closed gap,26 closest augustusGene,241 code uniprot,1546 uniprot,1775 uniprot,1789 coding geneid,118 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,203 codon genscan,100 genscan,122 mrna,321 xenoMrna,395 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 codons geneid,75 genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 coiled-coil uniprot,367 collection xenoRefGene,33 color chainDm6,369 chainNetDm6,372 est,131 est,316 genscan,86 genscan,96 intronEst,206 intronEst,391 mrna,77 mrna,262 netDm6,369 rmsk,177 xenoMrna,151 xenoMrna,336 xenoRefGene,58 xenoRefGene,169 coloration gold,53 colored chainDm6,344 chainNetDm6,347 netDm6,344 uniprot,160 uniprot,176 coloring chainDm6,360 chainNetDm6,363 genscan,116 mrna,322 netDm6,360 xenoMrna,396 xenoRefGene,139 xenoRefGene,146 colors xenoRefGene,81 xenoRefGene,161 combination est,278 intronEst,353 mrna,224 xenoMrna,298 combinations xenoMrna,120 combined rmsk,202 command uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 comparative chainDm6,16 chainNetDm6,19 chainNetDm6Viewchain,16 chainNetDm6Viewnet,16 netDm6,16 compare mrna,331 xenoMrna,405 xenoRefGene,155 comparison genscan,109 uniprot,1260 compiled uniprot,1771 complete genscan,213 completely uniprot,1464 xenoRefGene,137 complex chainDm6,177 chainNetDm6,180 netDm6,177 complexity rmsk,30 rmsk,153 components gold,279 composed uniprot,1396 compositional genscan,41 uniprot,399 computational geneid,26 geneid,145 genscan,196 uniprot,51 conditional augustusGene,118 configuration chainDm6,333 chainNetDm6,336 est,49 genscan,64 genscan,84 intronEst,127 mrna,30 netDm6,333 rmsk,109 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoMrna,34 xenoRefGene,46 configured est,372 intronEst,447 mrna,318 xenoMrna,392 xenoRefGene,89 confirming gold,181 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 considerable est,601 intronEst,676 considered intronEst,59 consistency uniprot,402 consortium uniprot,1986 consult est,220 intronEst,295 mrna,166 xenoMrna,240 contact uniprot,686 uniprot,1440 contain uniprot,1163 contained chainDm6,912 chainNetDm6,915 netDm6,912 containing gold,255 contains blastDm2FB,19 est,245 gap,80 intronEst,320 mrna,191 xenoMrna,265 xenoRefGene,142 contamination est,589 intronEst,93 intronEst,664 content augustusGene,71 gcPercent,37 gcPercent,47 gcPercent,50 contig gap,103 gold,41 gold,293 contigs gap,51 gap,110 gold,30 gold,75 gold,143 gold,222 gold,258 gold,264 controls xenoRefGene,92 convenience uniprot,404 conventions chainDm6,331 chainNetDm6,334 est,47 est,55 genscan,62 genscan,70 intronEst,125 intronEst,133 mrna,28 mrna,36 netDm6,331 rmsk,107 uniprot,447 xenoMrna,32 xenoMrna,40 xenoRefGene,44 xenoRefGene,52 converted chainDm6,625 chainNetDm6,628 netDm6,625 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponds est,228 intronEst,303 mrna,174 xenoMrna,248 cover est,522 gold,240 intronEst,597 coverage gold,208 uniprot,1485 covered chainDm6,835 chainNetDm6,838 gap,89 gold,77 netDm6,835 create gold,37 created chainDm6,1010 chainNetDm6,1013 microsat,89 netDm6,1010 rmsk,13 uniprot,824 uniprot,1942 creates chainDm6,660 chainNetDm6,663 netDm6,660 credits augustusGene,247 blastDm2FB,151 chainDm6,936 chainNetDm6,939 est,689 gcPercent,57 geneid,142 genscan,169 intronEst,764 microsat,104 mrna,400 netDm6,936 rmsk,284 simpleRepeat,66 uniprot,1938 xenoMrna,474 xenoRefGene,271 crg geneid,44 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 xenoMrna,312 xenoMrna,330 xenoMrna,368 xenoMrna,386 cruz chainDm6,986 chainDm6,1031 chainNetDm6,989 chainNetDm6,1034 netDm6,986 netDm6,1031 culex augustusGene,220 curated uniprot,35 uniprot,110 uniprot,142 xenoRefGene,287 curr geneid,167 current est,163 intronEst,238 mrna,109 rmsk,216 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 xenoMrna,183 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine gcPercent,25 d augustusGene,293 blastDm2FB,1 blastDm2FB,4 blastDm2FB,34 blastDm2FB,44 blastDm2FB,53 blastDm2FB,61 blastDm2FB,86 blastDm2FB,96 chainDm6,1 chainDm6,4 chainDm6,71 chainDm6,83 chainDm6,108 chainDm6,111 chainDm6,162 chainDm6,170 chainDm6,217 chainDm6,283 chainDm6,285 chainDm6,293 chainDm6,311 chainDm6,597 chainDm6,599 chainDm6,647 chainDm6,653 chainDm6,1078 chainDm6,1122 chainNetDm6,1 chainNetDm6,5 chainNetDm6,74 chainNetDm6,86 chainNetDm6,111 chainNetDm6,114 chainNetDm6,165 chainNetDm6,173 chainNetDm6,220 chainNetDm6,286 chainNetDm6,288 chainNetDm6,296 chainNetDm6,314 chainNetDm6,600 chainNetDm6,602 chainNetDm6,650 chainNetDm6,656 chainNetDm6,1081 chainNetDm6,1125 chainNetDm6Viewchain,2 chainNetDm6Viewnet,2 est,1 est,4 est,18 est,607 genscan,192 gold,17 gold,94 gold,120 gold,137 gold,154 gold,194 gold,234 intronEst,3 intronEst,19 intronEst,120 intronEst,682 mrna,1 mrna,4 mrna,19 mrna,347 netDm6,1 netDm6,4 netDm6,71 netDm6,83 netDm6,108 netDm6,111 netDm6,162 netDm6,170 netDm6,217 netDm6,283 netDm6,285 netDm6,293 netDm6,311 netDm6,597 netDm6,599 netDm6,647 netDm6,653 netDm6,1078 netDm6,1122 xenoMrna,29 xenoMrna,426 xenoRefGene,24 xenoRefGene,215 d23-6 est,732 intronEst,807 mrna,444 xenoMrna,518 d71-5 uniprot,2005 da est,712 intronEst,787 mrna,424 xenoMrna,498 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darker intronEst,142 darkly est,69 gcPercent,41 mrna,50 xenoMrna,54 data est,699 geneid,153 intronEst,774 microsat,47 mrna,411 rmsk,229 rmsk,246 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoMrna,485 xenoRefGene,36 xenoRefGene,281 database chainDm6,1002 chainNetDm6,1005 est,730 intronEst,805 mrna,442 netDm6,1002 rmsk,309 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoMrna,516 databases est,576 est,706 intronEst,97 intronEst,651 intronEst,781 mrna,418 xenoMrna,492 david chainDm6,996 chainNetDm6,999 netDm6,996 de augustusGene,303 geneid,38 default chainDm6,337 chainNetDm6,340 gap,122 gap,131 netDm6,337 uniprot,225 xenoRefGene,103 xenoRefGene,187 defined uniprot,305 uniprot,1387 defining geneid,106 degraded est,491 intronEst,566 degree est,586 intronEst,661 deletion chainDm6,159 chainDm6,1083 chainNetDm6,162 chainNetDm6,1086 netDm6,159 netDm6,1083 rmsk,190 deletions chainDm6,127 chainDm6,192 chainNetDm6,130 chainNetDm6,195 netDm6,127 netDm6,192 dense est,61 gold,21 intronEst,139 mrna,42 xenoMrna,46 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gap,10 gold,25 deposited est,563 intronEst,638 deprecated uniprot,1044 derived chainDm6,786 chainNetDm6,789 netDm6,786 uniprot,830 described chainDm6,793 chainNetDm6,796 genscan,161 netDm6,793 rmsk,96 uniprot,1524 describes augustusGene,226 description augustusGene,12 blastDm2FB,16 chainDm6,18 chainDm6,798 chainNetDm6,21 chainNetDm6,801 est,12 est,112 gap,7 gcPercent,12 geneid,10 genscan,10 genscan,77 genscan,133 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 netDm6,18 netDm6,798 rmsk,9 simpleRepeat,11 uniprot,11 uniprot,106 xenoMrna,11 xenoMrna,132 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed geneid,61 uniprot,1355 desired est,277 intronEst,352 mrna,223 xenoMrna,297 destined uniprot,244 detail genscan,164 detailed augustusGene,90 chainDm6,480 chainDm6,499 chainNetDm6,483 chainNetDm6,502 netDm6,480 netDm6,499 rmsk,37 uniprot,692 details uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determining chainDm6,504 chainNetDm6,507 netDm6,504 developed chainDm6,943 chainDm6,978 chainDm6,1024 chainNetDm6,946 chainNetDm6,981 chainNetDm6,1027 geneid,20 netDm6,943 netDm6,978 netDm6,1024 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ est,395 intronEst,470 uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainDm6,579 chainNetDm6,582 genscan,54 gold,119 netDm6,579 rmsk,120 uniprot,634 xenoMrna,113 direction est,81 est,99 intronEst,156 intronEst,174 directly uniprot,993 discarded chainDm6,712 chainNetDm6,715 netDm6,712 xenoRefGene,229 discover blastDm2FB,69 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainDm6,254 chainDm6,330 chainDm6,375 chainDm6,405 chainDm6,464 chainDm6,493 chainDm6,522 chainDm6,1000 chainNetDm6,257 chainNetDm6,333 chainNetDm6,378 chainNetDm6,408 chainNetDm6,467 chainNetDm6,496 chainNetDm6,525 chainNetDm6,1003 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 genscan,61 genscan,69 genscan,104 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 netDm6,254 netDm6,330 netDm6,375 netDm6,405 netDm6,464 netDm6,493 netDm6,522 netDm6,1000 rmsk,106 rmsk,112 rmsk,182 uniprot,446 xenoMrna,31 xenoMrna,39 xenoMrna,47 xenoMrna,147 xenoMrna,174 xenoMrna,204 xenoMrna,338 xenoMrna,362 xenoMrna,378 xenoMrna,394 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainDm6,441 chainDm6,538 chainDm6,717 chainNetDm6,444 chainNetDm6,541 chainNetDm6,720 est,685 intronEst,760 netDm6,441 netDm6,538 netDm6,717 xenoRefGene,195 displays chainDm6,134 chainNetDm6,137 microsat,13 netDm6,134 rmsk,116 simpleRepeat,14 xenoMrna,14 dissertation augustusGene,105 distant est,546 intronEst,621 distinguished gold,44 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainDm6,935 chainNetDm6,938 netDm6,935 divided uniprot,56 dj blastDm2FB,176 est,716 intronEst,791 mrna,428 xenoMrna,502 dl est,720 intronEst,795 mrna,432 xenoMrna,506 dm2 blastDm2FB,10 dm6 chainDm6,13 chainDm6,80 chainDm6,328 chainNetDm6,14 chainNetDm6,83 chainNetDm6,331 chainNetDm6Viewchain,11 chainNetDm6Viewnet,11 netDm6,13 netDm6,80 netDm6,328 dna chainDm6,1044 chainNetDm6,1047 geneid,119 genscan,219 microsat,123 netDm6,1044 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 xenoMrna,110 do uniprot,168 uniprot,1129 documented gold,184 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainDm6,142 chainDm6,173 chainNetDm6,145 chainNetDm6,176 netDm6,142 netDm6,173 double-lined chainDm6,234 chainNetDm6,237 netDm6,234 double-sided chainDm6,116 chainNetDm6,119 netDm6,116 download uniprot,1744 uniprot,1983 downloaded uniprot,1741 uniprot,1777 downloading uniprot,1787 downloads rmsk,76 uniprot,1698 draft gold,13 drastically intronEst,99 drawn gap,70 gcPercent,39 gold,86 draws uniprot,1532 drosim1 uniprot,1816 drosophila augustusGene,213 geneid,187 due chainDm6,156 chainDm6,227 chainDm6,239 chainNetDm6,159 chainNetDm6,230 chainNetDm6,242 netDm6,156 netDm6,227 netDm6,239 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainDm6,1082 chainNetDm6,1085 netDm6,1082 during chainDm6,840 chainNetDm6,843 gap,27 netDm6,840 dynamic chainDm6,673 chainNetDm6,676 netDm6,673 e geneid,156 geneid,181 uniprot,2021 e.g chainDm6,392 chainNetDm6,395 netDm6,392 uniprot,398 uniprot,467 each blastDm2FB,80 chainDm6,272 chainNetDm6,275 est,217 genscan,99 intronEst,292 mrna,163 netDm6,272 uniprot,151 xenoMrna,237 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 effect est,561 intronEst,636 either chainDm6,139 chainNetDm6,142 gap,53 netDm6,139 uniprot,816 uniprot,1398 electronic rmsk,312 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 eliminate est,634 intronEst,709 eliminating intronEst,105 elsevier genscan,202 emerged chainDm6,846 chainNetDm6,849 est,531 intronEst,606 netDm6,846 end est,481 est,499 est,509 est,550 intronEst,556 intronEst,574 intronEst,584 intronEst,625 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,86 ensembl uniprot,731 uniprot,834 uniprot,865 enter chainDm6,386 chainNetDm6,389 netDm6,386 entered est,254 intronEst,329 mrna,200 xenoMrna,274 entirely uniprot,1434 especially est,155 intronEst,230 mrna,101 xenoMrna,175 est est,11 est,87 est,183 est,412 est,575 est,596 est,648 est,697 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,487 intronEst,650 intronEst,671 intronEst,723 intronEst,772 mrna,11 xenoMrna,10 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,451 est,496 est,507 est,609 est,636 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,526 intronEst,571 intronEst,582 intronEst,684 intronEst,711 etc uniprot,479 evaluate uniprot,1461 even est,570 est,577 intronEst,645 intronEst,652 uniprot,136 every chainDm6,289 chainNetDm6,292 netDm6,289 uniprot,1571 evidence intronEst,65 evolution chainDm6,1079 chainNetDm6,1082 netDm6,1079 ew blastDm2FB,174 exact uniprot,1622 uniprot,1747 examined gold,161 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 uniprot,1450 uniprot,1811 uniprot,1901 xenoMrna,206 xenoMrna,259 except uniprot,508 exception gap,19 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 xenoMrna,154 xenoMrna,348 xenoMrna,354 exe uniprot,1918 exist chainDm6,425 chainNetDm6,428 gold,56 netDm6,425 exon augustusGene,86 blastDm2FB,70 blastDm2FB,81 blastDm2FB,115 blastDm2FB,128 exons blastDm2FB,98 chainDm6,54 chainNetDm6,57 geneid,89 geneid,95 geneid,126 geneid,141 genscan,44 netDm6,54 expansions simpleRepeat,48 expense intronEst,103 experimentally uniprot,304 explored uniprot,1716 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 xenoMrna,214 extend rmsk,267 extended blastDm2FB,131 extending blastDm2FB,117 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 f chainDm6,1052 chainNetDm6,1055 netDm6,1052 facilitate genscan,106 uniprot,1852 factor est,231 intronEst,306 mrna,177 xenoMrna,251 famiglietti uniprot,2018 families uniprot,1395 faq augustusGene,45 genscan,60 rmsk,280 uniprot,1839 far uniprot,599 feature chainDm6,258 chainNetDm6,261 est,378 genscan,129 intronEst,453 mrna,324 netDm6,258 uniprot,64 uniprot,524 uniprot,613 xenoMrna,398 xenoRefGene,147 xenoRefGene,182 features uniprot,694 uniprot,1805 xenoRefGene,83 fed chainDm6,637 chainNetDm6,640 netDm6,637 feedback uniprot,1445 uniprot,1961 field augustusGene,120 file uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 filenames uniprot,1748 uniprot,1894 files uniprot,1863 fill chainDm6,870 chainDm6,903 chainNetDm6,873 chainNetDm6,906 netDm6,870 netDm6,903 filled chainDm6,434 chainDm6,453 chainDm6,852 chainDm6,925 chainNetDm6,437 chainNetDm6,456 chainNetDm6,855 chainNetDm6,928 netDm6,434 netDm6,453 netDm6,852 netDm6,925 filling gold,272 filter chainDm6,398 chainNetDm6,401 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 genscan,82 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 netDm6,398 uniprot,187 uniprot,664 xenoMrna,139 xenoMrna,188 xenoMrna,201 xenoMrna,210 xenoMrna,257 xenoMrna,287 xenoMrna,311 xenoMrna,329 xenoMrna,367 xenoMrna,385 filtered est,330 intronEst,405 mrna,276 uniprot,1480 uniprot,1499 xenoMrna,350 filtering est,269 intronEst,344 mrna,215 uniprot,693 uniprot,912 uniprot,1154 xenoMrna,289 final uniprot,1153 finally blastDm2FB,93 geneid,120 find chainDm6,682 chainNetDm6,685 netDm6,682 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainDm6,300 chainNetDm6,303 netDm6,300 finger uniprot,327 finishing gap,29 first blastDm2FB,48 chainDm6,810 chainNetDm6,813 geneid,68 netDm6,810 uniprot,70 xenoMrna,72 fish augustusGene,201 fit chainDm6,830 chainNetDm6,833 netDm6,830 fix uniprot,851 flag rmsk,253 flags rmsk,255 fly augustusGene,214 flybase blastDm2FB,36 blastDm2FB,55 following chainDm6,691 chainNetDm6,694 genscan,81 netDm6,691 follows est,52 genscan,67 intronEst,130 mrna,33 xenoMrna,37 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastDm2FB,161 chainDm6,271 chainDm6,288 chainDm6,299 chainDm6,306 chainDm6,511 chainNetDm6,274 chainNetDm6,291 chainNetDm6,302 chainNetDm6,309 chainNetDm6,514 est,56 est,114 est,185 est,216 est,238 est,400 est,444 gap,126 gap,135 geneid,117 geneid,150 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 gold,162 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,519 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 netDm6,271 netDm6,288 netDm6,299 netDm6,306 netDm6,511 rmsk,25 rmsk,259 rmsk,281 rmsk,291 simpleRepeat,30 simpleRepeat,56 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 xenoMrna,41 xenoMrna,64 xenoMrna,134 xenoMrna,205 xenoMrna,236 xenoMrna,258 xenoMrna,411 xenoRefGene,20 xenoRefGene,53 xenoRefGene,177 form uniprot,1665 format chainDm6,628 chainNetDm6,631 netDm6,628 formats uniprot,885 uniprot,1865 forth chainDm6,460 chainNetDm6,463 netDm6,460 found augustusGene,100 gold,180 gold,186 mrna,375 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 xenoMrna,448 four chainDm6,528 chainNetDm6,531 netDm6,528 xenoMrna,119 fragment gap,85 gold,285 fragments est,42 gold,4 intronEst,53 free uniprot,1435 from augustusGene,19 blastDm2FB,25 blastDm2FB,51 chainDm6,189 chainDm6,319 chainDm6,580 chainDm6,604 chainDm6,787 chainDm6,960 chainDm6,992 chainNetDm6,192 chainNetDm6,322 chainNetDm6,583 chainNetDm6,607 chainNetDm6,790 chainNetDm6,963 chainNetDm6,995 est,396 est,416 est,437 est,547 est,565 est,610 est,696 geneid,16 geneid,92 geneid,121 genscan,15 gold,3 gold,226 gold,268 intronEst,471 intronEst,491 intronEst,512 intronEst,622 intronEst,640 intronEst,685 intronEst,771 mrna,7 mrna,408 netDm6,189 netDm6,319 netDm6,580 netDm6,604 netDm6,787 netDm6,960 netDm6,992 rmsk,86 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 xenoMrna,6 xenoMrna,25 xenoMrna,482 xenoRefGene,27 xenoRefGene,167 xenoRefGene,278 full chainDm6,252 chainDm6,404 chainNetDm6,255 chainNetDm6,407 netDm6,252 netDm6,404 rmsk,111 uniprot,486 uniprot,528 uniprot,540 furthermore augustusGene,64 future gap,32 g gcPercent,21 geneid,158 geneid,179 microsat,115 simpleRepeat,75 g-25-100100-90 chainDm6,699 chainNetDm6,702 netDm6,699 gambiae augustusGene,219 gap blastDm2FB,106 blastDm2FB,110 chainDm6,88 chainDm6,98 chainDm6,201 chainDm6,497 chainDm6,509 chainDm6,532 chainDm6,550 chainDm6,565 chainDm6,582 chainDm6,723 chainDm6,854 chainNetDm6,91 chainNetDm6,101 chainNetDm6,204 chainNetDm6,500 chainNetDm6,512 chainNetDm6,535 chainNetDm6,553 chainNetDm6,568 chainNetDm6,585 chainNetDm6,726 chainNetDm6,857 gap,1 gap,2 gap,57 gap,64 gap,77 gap,95 gap,112 gold,71 netDm6,88 netDm6,98 netDm6,201 netDm6,497 netDm6,509 netDm6,532 netDm6,550 netDm6,565 netDm6,582 netDm6,723 netDm6,854 gapless chainDm6,666 chainNetDm6,669 netDm6,666 gaps chainDm6,94 chainDm6,105 chainDm6,118 chainDm6,152 chainDm6,178 chainDm6,224 chainDm6,235 chainDm6,424 chainDm6,446 chainDm6,473 chainDm6,909 chainDm6,915 chainNetDm6,97 chainNetDm6,108 chainNetDm6,121 chainNetDm6,155 chainNetDm6,181 chainNetDm6,227 chainNetDm6,238 chainNetDm6,427 chainNetDm6,449 chainNetDm6,476 chainNetDm6,912 chainNetDm6,918 gap,11 gap,16 gap,23 gap,34 gap,84 gap,86 gap,104 gold,55 gold,241 gold,273 netDm6,94 netDm6,105 netDm6,118 netDm6,152 netDm6,178 netDm6,224 netDm6,235 netDm6,424 netDm6,446 netDm6,473 netDm6,909 netDm6,915 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb uniprot,1815 gc gcPercent,1 gcPercent,4 gcPercent,14 gcPercent,36 gcPercent,46 gcPercent,49 gen geneid,41 genbank est,25 est,611 est,721 intronEst,26 intronEst,686 intronEst,796 mrna,8 mrna,23 mrna,346 mrna,433 uniprot,376 xenoMrna,7 xenoMrna,24 xenoMrna,507 gencode uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastDm2FB,14 geneid,4 geneid,8 geneid,14 geneid,128 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 gene-rich gcPercent,55 genedx uniprot,1973 geneid geneid,1 geneid,3 geneid,18 geneid,50 geneid,163 geneid,185 general est,493 intronEst,568 generally rmsk,72 uniprot,248 generate est,604 intronEst,679 rmsk,227 rmsk,300 generated gcPercent,61 rmsk,248 xenoRefGene,282 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastDm2FB,12 blastDm2FB,30 est,45 geneid,2 geneid,6 geneid,56 geneid,166 genscan,2 genscan,6 genscan,59 intronEst,56 simpleRepeat,41 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,185 xenoRefGene,193 xenoRefGene,204 genet rmsk,318 genetic rmsk,88 genome augustusGene,31 blastDm2FB,63 chainDm6,25 chainDm6,85 chainDm6,219 chainDm6,295 chainDm6,308 chainDm6,808 chainDm6,1129 chainNetDm6,28 chainNetDm6,88 chainNetDm6,222 chainNetDm6,298 chainNetDm6,311 chainNetDm6,811 chainNetDm6,1132 est,28 est,616 est,744 geneid,188 gold,19 gold,100 gold,131 gold,156 gold,218 gold,291 intronEst,29 intronEst,39 intronEst,691 intronEst,819 mrna,26 mrna,354 mrna,456 netDm6,25 netDm6,85 netDm6,219 netDm6,295 netDm6,308 netDm6,808 netDm6,1129 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoMrna,428 xenoMrna,529 xenoRefGene,217 xenoRefGene,301 genome.bed uniprot,1935 uniprot,1937 genomes chainDm6,31 chainDm6,609 chainDm6,1091 chainNetDm6,34 chainNetDm6,612 chainNetDm6,1094 netDm6,31 netDm6,609 netDm6,1091 uniprot,863 uniprot,941 genomic chainDm6,516 chainDm6,1043 chainDm6,1059 chainNetDm6,519 chainNetDm6,1046 chainNetDm6,1062 est,91 est,398 est,571 est,682 geneid,59 genscan,92 genscan,218 intronEst,166 intronEst,473 intronEst,646 intronEst,757 mrna,335 mrna,396 netDm6,516 netDm6,1043 netDm6,1059 uniprot,28 uniprot,450 xenoMrna,102 xenoMrna,409 xenoMrna,470 xenoRefGene,164 xenoRefGene,267 genomics chainDm6,17 chainNetDm6,20 chainNetDm6Viewchain,17 chainNetDm6Viewnet,17 netDm6,17 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,107 giri rmsk,92 rmsk,290 gish blastDm2FB,169 github uniprot,1559 give xenoMrna,112 given uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go genscan,113 uniprot,1412 gold gold,50 gold,65 golden gold,33 goldenpath uniprot,1907 graphical chainDm6,463 chainNetDm6,466 netDm6,463 rmsk,181 green uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainDm6,658 chainNetDm6,661 geneid,31 netDm6,658 uniprot,430 groups augustusGene,194 gt intronEst,84 uniprot,907 uniprot,909 uniprot,1930 guanine gcPercent,22 guig geneid,23 geneid,159 geneid,182 h uniprot,2013 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hardison chainDm6,962 chainDm6,1119 chainNetDm6,965 chainNetDm6,1122 netDm6,962 netDm6,1119 harris chainDm6,1036 chainNetDm6,1039 netDm6,1036 has est,117 intronEst,83 intronEst,192 mrna,63 rmsk,212 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoMrna,137 xenoRefGene,68 haussler augustusGene,292 chainDm6,997 chainDm6,1077 chainDm6,1121 chainNetDm6,1000 chainNetDm6,1080 chainNetDm6,1124 netDm6,997 netDm6,1077 netDm6,1121 have chainDm6,592 chainNetDm6,595 intronEst,7 netDm6,592 rmsk,69 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having est,655 est,664 intronEst,730 intronEst,739 mrna,369 mrna,378 xenoMrna,442 xenoMrna,452 xenoRefGene,240 xenoRefGene,249 heavily uniprot,1533 helices uniprot,366 helpful est,145 intronEst,220 mrna,91 xenoMrna,165 hence xenoMrna,91 here est,407 intronEst,482 mrna,344 uniprot,1795 xenoMrna,86 xenoMrna,418 xenoRefGene,176 heterochromatic gap,22 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu uniprot,1814 uniprot,1906 uniprot,1916 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,183 hierarchical geneid,64 hierarchy chainDm6,845 chainNetDm6,848 netDm6,845 high gcPercent,35 gcPercent,48 higher chainDm6,877 chainNetDm6,880 netDm6,877 rmsk,200 higher-level chainDm6,894 chainNetDm6,897 netDm6,894 higher-scoring chainDm6,838 chainDm6,857 chainNetDm6,841 chainNetDm6,860 netDm6,838 netDm6,857 highest est,657 intronEst,732 mrna,371 uniprot,948 uniprot,1113 xenoMrna,444 xenoRefGene,242 highest-scoring chainDm6,415 chainDm6,804 chainNetDm6,418 chainNetDm6,807 netDm6,415 netDm6,804 highlight est,325 intronEst,400 mrna,271 xenoMrna,345 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 uniprot,580 xenoMrna,315 xenoMrna,333 highly microsat,40 hinrichs chainDm6,1073 chainNetDm6,1076 netDm6,1073 his chainDm6,971 chainNetDm6,974 netDm6,971 honeybee1 augustusGene,217 hou chainDm6,950 chainNetDm6,953 netDm6,950 how chainDm6,905 chainDm6,922 chainNetDm6,908 chainNetDm6,925 netDm6,905 netDm6,922 http uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainDm6,1090 chainNetDm6,1093 genscan,217 netDm6,1090 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainDm6,1125 chainNetDm6,1128 netDm6,1125 hybridizes est,461 intronEst,536 i est,714 intronEst,789 mrna,426 xenoMrna,500 i.e intronEst,72 id uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified blastDm2FB,31 chainDm6,966 chainNetDm6,969 est,661 intronEst,736 netDm6,966 xenoRefGene,246 identify geneid,165 identity est,659 est,667 est,679 intronEst,734 intronEst,742 intronEst,754 microsat,71 mrna,373 mrna,381 mrna,393 xenoMrna,446 xenoMrna,455 xenoMrna,467 xenoRefGene,244 xenoRefGene,252 xenoRefGene,264 ids uniprot,1292 if est,268 est,280 est,296 est,332 est,349 gap,43 gold,69 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoMrna,288 xenoMrna,300 xenoMrna,316 xenoMrna,352 xenoMrna,369 xenoRefGene,196 ignored uniprot,1426 ii215-25 augustusGene,338 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 improved chainDm6,1039 chainNetDm6,1042 netDm6,1039 in augustusGene,101 blastDm2FB,32 chainDm6,37 chainDm6,106 chainDm6,128 chainDm6,160 chainDm6,168 chainDm6,183 chainDm6,202 chainDm6,205 chainDm6,245 chainDm6,266 chainDm6,315 chainDm6,352 chainDm6,382 chainDm6,394 chainDm6,403 chainDm6,421 chainDm6,426 chainDm6,435 chainDm6,447 chainDm6,461 chainDm6,503 chainDm6,520 chainDm6,551 chainDm6,569 chainDm6,583 chainDm6,620 chainDm6,718 chainDm6,806 chainDm6,847 chainDm6,855 chainDm6,871 chainDm6,904 chainDm6,916 chainDm6,1086 chainNetDm6,40 chainNetDm6,109 chainNetDm6,131 chainNetDm6,163 chainNetDm6,171 chainNetDm6,186 chainNetDm6,205 chainNetDm6,208 chainNetDm6,248 chainNetDm6,269 chainNetDm6,318 chainNetDm6,355 chainNetDm6,385 chainNetDm6,397 chainNetDm6,406 chainNetDm6,424 chainNetDm6,429 chainNetDm6,438 chainNetDm6,450 chainNetDm6,464 chainNetDm6,506 chainNetDm6,523 chainNetDm6,554 chainNetDm6,572 chainNetDm6,586 chainNetDm6,623 chainNetDm6,721 chainNetDm6,809 chainNetDm6,850 chainNetDm6,858 chainNetDm6,874 chainNetDm6,907 chainNetDm6,919 chainNetDm6,1089 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,492 est,540 est,650 est,686 gap,12 gap,31 gap,40 gap,101 gcPercent,5 gcPercent,27 geneid,45 geneid,57 geneid,66 geneid,186 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,20 gold,57 gold,111 gold,242 gold,274 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,567 intronEst,615 intronEst,725 intronEst,761 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,364 netDm6,37 netDm6,106 netDm6,128 netDm6,160 netDm6,168 netDm6,183 netDm6,202 netDm6,205 netDm6,245 netDm6,266 netDm6,315 netDm6,352 netDm6,382 netDm6,394 netDm6,403 netDm6,421 netDm6,426 netDm6,435 netDm6,447 netDm6,461 netDm6,503 netDm6,520 netDm6,551 netDm6,569 netDm6,583 netDm6,620 netDm6,718 netDm6,806 netDm6,847 netDm6,855 netDm6,871 netDm6,904 netDm6,916 netDm6,1086 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 xenoMrna,23 xenoMrna,45 xenoMrna,68 xenoMrna,171 xenoMrna,192 xenoMrna,215 xenoMrna,225 xenoMrna,243 xenoMrna,285 xenoMrna,437 xenoRefGene,235 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 xenoMrna,153 xenoMrna,347 xenoMrna,371 included augustusGene,160 blastDm2FB,127 blastDm2FB,150 includes rmsk,168 uniprot,1587 including est,7 intronEst,116 rmsk,159 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainDm6,151 chainDm6,260 chainNetDm6,154 chainNetDm6,263 est,71 mrna,52 netDm6,151 netDm6,260 xenoMrna,56 indicates est,79 intronEst,144 intronEst,154 xenoMrna,73 xenoMrna,95 xenoRefGene,60 individual chainDm6,257 chainDm6,518 chainNetDm6,260 chainNetDm6,521 gold,233 netDm6,257 netDm6,518 information augustusGene,36 blastDm2FB,163 chainDm6,481 chainDm6,494 chainDm6,500 chainDm6,872 chainNetDm6,484 chainNetDm6,497 chainNetDm6,503 chainNetDm6,875 est,78 est,402 genscan,51 genscan,126 intronEst,153 intronEst,477 microsat,97 mrna,339 netDm6,481 netDm6,494 netDm6,500 netDm6,872 rmsk,89 rmsk,283 simpleRepeat,58 uniprot,678 uniprot,1842 uniprot,2038 xenoMrna,63 xenoMrna,413 xenoRefGene,179 initially gold,145 initiate rmsk,275 initio augustusGene,4 augustusGene,17 input uniprot,1952 inserted chainDm6,594 chainDm6,928 chainNetDm6,597 chainNetDm6,931 netDm6,594 netDm6,928 insertion chainDm6,167 chainNetDm6,170 netDm6,167 rmsk,193 inside uniprot,560 inspection uniprot,1653 instead xenoRefGene,120 institute rmsk,91 instructions uniprot,1785 integrator uniprot,1725 interactions uniprot,316 interactively uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international est,703 intronEst,778 mrna,415 xenoMrna,489 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainDm6,626 chainDm6,638 chainDm6,656 chainDm6,831 chainNetDm6,629 chainNetDm6,641 chainNetDm6,659 chainNetDm6,834 est,255 est,421 est,428 est,573 intronEst,330 intronEst,496 intronEst,503 intronEst,648 mrna,201 netDm6,626 netDm6,638 netDm6,656 netDm6,831 uniprot,57 xenoMrna,275 intractable gap,21 intron augustusGene,88 augustusGene,330 est,623 intronEst,71 intronEst,698 introns chainDm6,62 chainNetDm6,65 est,640 genscan,45 intronEst,715 netDm6,62 inv chainDm6,556 chainNetDm6,559 netDm6,556 inversion gold,178 gold,185 inversions chainDm6,124 chainDm6,190 chainNetDm6,127 chainNetDm6,193 gold,169 netDm6,124 netDm6,190 invertebrate xenoMrna,21 inverted chainDm6,890 chainNetDm6,893 netDm6,890 involve chainDm6,180 chainNetDm6,183 netDm6,180 is blastDm2FB,153 chainDm6,297 chainDm6,318 chainDm6,501 chainNetDm6,300 chainNetDm6,321 chainNetDm6,504 est,284 est,300 est,336 est,353 est,414 est,426 est,435 est,455 est,584 est,628 gap,58 gap,61 gap,69 gap,97 gap,114 gap,118 gcPercent,51 geneid,33 geneid,51 geneid,130 gold,76 gold,85 gold,252 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,489 intronEst,501 intronEst,510 intronEst,530 intronEst,659 intronEst,703 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 netDm6,297 netDm6,318 netDm6,501 rmsk,95 simpleRepeat,28 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 xenoMrna,67 xenoMrna,121 xenoMrna,127 xenoMrna,304 xenoMrna,320 xenoMrna,356 xenoMrna,373 iso1 chainDm6,11 chainDm6,78 chainDm6,326 chainNetDm6,12 chainNetDm6,81 chainNetDm6,329 chainNetDm6Viewchain,9 chainNetDm6Viewnet,9 netDm6,11 netDm6,78 netDm6,326 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,415 intronEst,490 issue est,731 intronEst,806 mrna,443 uniprot,2004 xenoMrna,517 it chainDm6,101 chainDm6,296 chainDm6,555 chainDm6,567 chainNetDm6,104 chainNetDm6,299 chainNetDm6,558 chainNetDm6,570 est,93 est,107 est,477 gap,60 genscan,143 intronEst,168 intronEst,182 intronEst,552 netDm6,101 netDm6,296 netDm6,555 netDm6,567 uniprot,228 uniprot,625 uniprot,1586 item xenoRefGene,77 items chainDm6,519 chainNetDm6,522 est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,277 netDm6,519 xenoMrna,50 xenoMrna,158 xenoMrna,168 xenoMrna,351 xenoRefGene,104 its uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j blastDm2FB,182 est,718 genscan,220 intronEst,793 mrna,430 rmsk,99 rmsk,305 xenoMrna,504 jan chainDm6,1132 chainNetDm6,1135 est,727 intronEst,802 microsat,129 mrna,439 netDm6,1132 simpleRepeat,89 uniprot,2001 xenoMrna,513 jim blastDm2FB,195 blastDm2FB,208 chainDm6,988 chainDm6,1015 chainDm6,1033 chainNetDm6,991 chainNetDm6,1018 chainNetDm6,1036 netDm6,988 netDm6,1015 netDm6,1033 joined chainDm6,136 chainNetDm6,139 netDm6,136 journal rmsk,313 jun geneid,171 june blastDm2FB,40 jurka rmsk,98 rmsk,304 k augustusGene,268 karlin genscan,148 genscan,209 karsch-mizrachi est,713 intronEst,788 mrna,425 xenoMrna,499 kasif genscan,193 kd-tree chainDm6,662 chainNetDm6,665 netDm6,662 kd-trees chainDm6,680 chainNetDm6,683 netDm6,680 keep uniprot,1486 kent blastDm2FB,196 blastDm2FB,209 chainDm6,989 chainDm6,1016 chainDm6,1034 chainDm6,1069 chainDm6,1111 chainNetDm6,992 chainNetDm6,1019 chainNetDm6,1037 chainNetDm6,1072 chainNetDm6,1114 est,737 intronEst,812 mrna,449 netDm6,989 netDm6,1016 netDm6,1034 netDm6,1069 netDm6,1111 xenoMrna,523 xenoRefGene,294 kept mrna,399 xenoMrna,473 xenoRefGene,270 known blastDm2FB,29 chainDm6,939 chainNetDm6,942 gap,59 gap,98 gap,116 netDm6,939 xenoRefGene,15 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled uniprot,457 xenoRefGene,106 labeling est,376 intronEst,451 labels xenoRefGene,78 largely chainDm6,155 chainNetDm6,158 netDm6,155 larger intronEst,146 largest chainDm6,414 chainNetDm6,417 netDm6,414 lastz chainDm6,613 chainDm6,788 chainDm6,937 chainNetDm6,616 chainNetDm6,791 chainNetDm6,940 netDm6,613 netDm6,788 netDm6,937 lavtoaxt chainDm6,631 chainNetDm6,634 netDm6,631 least blastDm2FB,140 est,676 intronEst,68 intronEst,77 intronEst,751 microsat,29 microsat,78 mrna,390 xenoMrna,464 xenoRefGene,261 lee uniprot,1955 lemeunier gold,188 length augustusGene,82 est,38 est,624 gap,102 genscan,39 intronEst,49 intronEst,81 intronEst,699 less uniprot,680 xenoRefGene,225 level chainDm6,409 chainDm6,443 chainDm6,448 chainDm6,455 chainDm6,513 chainDm6,540 chainDm6,553 chainDm6,585 chainNetDm6,412 chainNetDm6,446 chainNetDm6,451 chainNetDm6,458 chainNetDm6,516 chainNetDm6,543 chainNetDm6,556 chainNetDm6,588 est,668 intronEst,91 intronEst,743 mrna,382 netDm6,409 netDm6,443 netDm6,448 netDm6,455 netDm6,513 netDm6,540 netDm6,553 netDm6,585 rmsk,175 xenoMrna,456 xenoRefGene,62 xenoRefGene,253 libraries est,521 intronEst,596 rmsk,224 rmsk,297 library rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,207 like chainDm6,53 chainDm6,61 chainNetDm6,56 chainNetDm6,64 netDm6,53 netDm6,61 uniprot,1541 likely augustusGene,111 microsat,17 line chainDm6,491 chainNetDm6,494 gap,68 gold,84 gold,140 netDm6,491 rmsk,136 uniprot,1872 uniprot,1876 line-up chainDm6,558 chainNetDm6,561 netDm6,558 line-ups chainDm6,543 chainNetDm6,546 netDm6,543 lineage-specific chainDm6,963 chainNetDm6,966 netDm6,963 linear chainDm6,722 chainNetDm6,725 netDm6,722 lineargap chainDm6,728 chainNetDm6,731 netDm6,728 lines chainDm6,143 chainDm6,150 chainDm6,174 chainDm6,471 chainNetDm6,146 chainNetDm6,153 chainNetDm6,177 chainNetDm6,474 gold,122 gold,196 gold,236 gold,271 netDm6,143 netDm6,150 netDm6,174 netDm6,471 link uniprot,491 uniprot,1675 linux.x86_64 uniprot,1919 lipid uniprot,346 lipman blastDm2FB,175 est,715 intronEst,790 mrna,427 xenoMrna,501 lipoification uniprot,577 list est,212 intronEst,287 mrna,158 uniprot,979 uniprot,1165 uniprot,1831 xenoMrna,232 literature uniprot,434 lm uniprot,2019 local blastDm2FB,178 chainDm6,123 chainDm6,196 chainNetDm6,126 chainNetDm6,199 netDm6,123 netDm6,196 located simpleRepeat,21 location chainDm6,265 chainNetDm6,268 netDm6,265 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 uniprot,451 log-likelihood geneid,111 logic est,279 intronEst,354 mrna,225 xenoMrna,299 long est,639 intronEst,714 rmsk,132 rmsk,137 longer chainDm6,93 chainNetDm6,96 netDm6,93 longest chainDm6,536 chainNetDm6,539 netDm6,536 look chainDm6,52 chainNetDm6,55 netDm6,52 loose chainDm6,729 chainNetDm6,732 netDm6,729 lot uniprot,1950 louis gold,113 low gcPercent,45 rmsk,29 rmsk,152 lower chainDm6,512 chainNetDm6,515 netDm6,512 lower-level chainDm6,879 chainDm6,885 chainNetDm6,882 chainNetDm6,888 netDm6,879 netDm6,885 ls-snp uniprot,1536 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 made uniprot,931 uniprot,938 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 major gold,177 make blastDm2FB,78 est,410 est,476 intronEst,485 intronEst,551 uniprot,1406 making uniprot,1978 manner uniprot,1469 manual uniprot,1652 many chainDm6,422 chainNetDm6,425 est,147 intronEst,106 intronEst,222 mrna,93 netDm6,422 uniprot,932 uniprot,1124 xenoMrna,167 map chainDm6,350 chainNetDm6,353 netDm6,350 uniprot,758 uniprot,1885 mapped augustusGene,298 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping gap,4 gcPercent,9 gold,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark est,497 intronEst,572 uniprot,1539 uniprot,1956 markers microsat,23 markov augustusGene,325 geneid,115 masked rmsk,71 match chainDm6,270 chainDm6,537 chainDm6,575 chainNetDm6,273 chainNetDm6,540 chainNetDm6,578 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 netDm6,270 netDm6,537 netDm6,575 uniprot,1305 uniprot,1341 xenoMrna,85 xenoMrna,309 xenoMrna,324 xenoMrna,365 xenoMrna,383 matched blastDm2FB,138 matches est,72 mrna,53 xenoMrna,57 matching chainDm6,273 chainNetDm6,276 est,90 intronEst,165 netDm6,273 uniprot,1068 uniprot,1075 xenoMrna,100 matrix chainDm6,692 chainDm6,724 chainNetDm6,695 chainNetDm6,727 netDm6,692 netDm6,724 mature est,467 intronEst,542 unipChain,3 uniprot,251 uniprot,292 maximally chainDm6,684 chainNetDm6,687 netDm6,684 maximilian uniprot,1944 maximizing geneid,132 maximum blastDm2FB,105 est,622 intronEst,697 maxtracks augustusGene,139 may chainDm6,187 chainDm6,451 chainNetDm6,190 chainNetDm6,454 est,143 est,261 est,369 est,472 est,474 est,486 est,488 est,508 est,633 gap,24 intronEst,218 intronEst,336 intronEst,444 intronEst,547 intronEst,549 intronEst,561 intronEst,563 intronEst,583 intronEst,708 mrna,89 mrna,207 mrna,315 netDm6,187 netDm6,451 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 uniprot,2046 xenoMrna,163 xenoMrna,281 xenoMrna,389 md106ts gold,198 md199s gold,199 md5 uniprot,1601 mdash est,446 est,450 intronEst,521 intronEst,525 mediating uniprot,314 medicine gold,110 medium xenoRefGene,73 mel blastDm2FB,2 melanogaster blastDm2FB,5 blastDm2FB,35 blastDm2FB,54 blastDm2FB,62 chainDm6,2 chainDm6,5 chainDm6,72 chainDm6,109 chainDm6,163 chainDm6,284 chainDm6,312 chainDm6,598 chainDm6,648 chainNetDm6,2 chainNetDm6,6 chainNetDm6,75 chainNetDm6,112 chainNetDm6,166 chainNetDm6,287 chainNetDm6,315 chainNetDm6,601 chainNetDm6,651 chainNetDm6Viewchain,3 chainNetDm6Viewnet,3 gold,155 gold,174 netDm6,2 netDm6,5 netDm6,72 netDm6,109 netDm6,163 netDm6,284 netDm6,312 netDm6,598 netDm6,648 mellifera augustusGene,216 menu xenoRefGene,174 method uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 blastDm2FB,47 chainDm6,587 chainDm6,792 chainNetDm6,590 chainNetDm6,795 est,408 geneid,49 genscan,130 genscan,197 intronEst,483 microsat,45 mrna,345 netDm6,587 netDm6,792 rmsk,210 simpleRepeat,55 uniprot,777 xenoMrna,419 xenoRefGene,208 mica geneid,43 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,642 intronEst,183 intronEst,717 miller blastDm2FB,171 chainDm6,957 chainDm6,994 chainDm6,1055 chainDm6,1075 chainDm6,1123 chainNetDm6,960 chainNetDm6,997 chainNetDm6,1058 chainNetDm6,1078 chainNetDm6,1126 netDm6,957 netDm6,994 netDm6,1055 netDm6,1075 netDm6,1123 minexonintronprob augustusGene,135 minimum chainDm6,705 chainNetDm6,708 netDm6,705 minmeanexonintronprob augustusGene,137 minmei chainDm6,949 chainNetDm6,952 netDm6,949 mismatch rmsk,188 misplacements uniprot,853 mode chainDm6,406 chainNetDm6,409 est,63 est,128 gold,22 intronEst,141 intronEst,203 mrna,44 mrna,74 netDm6,406 rmsk,113 xenoMrna,48 xenoMrna,148 model augustusGene,121 augustusGene,326 geneid,116 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainDm6,255 chainNetDm6,258 netDm6,255 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol blastDm2FB,183 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 blastDm2FB,119 blastDm2FB,162 chainDm6,176 chainDm6,237 chainNetDm6,179 chainNetDm6,240 est,68 est,175 est,271 est,401 gcPercent,40 genscan,50 genscan,125 genscan,163 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 netDm6,176 netDm6,237 rmsk,282 simpleRepeat,57 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoMrna,53 xenoMrna,195 xenoMrna,291 xenoMrna,412 xenoRefGene,178 mosaic gold,116 gold,254 most augustusGene,93 augustusGene,110 est,445 intronEst,520 rmsk,215 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainDm6,1088 chainNetDm6,1091 netDm6,1088 uniprot,521 uniprot,535 mrna est,9 est,468 est,484 est,567 intronEst,10 intronEst,543 intronEst,559 intronEst,642 mrna,9 mrna,14 mrna,129 mrna,362 mrna,402 mrna,409 xenoMrna,8 xenoMrna,22 xenoMrna,203 xenoMrna,435 xenoMrna,476 xenoMrna,483 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,349 xenoMrna,2 xenoMrna,5 xenoMrna,213 xenoMrna,307 xenoMrna,322 xenoMrna,363 xenoMrna,381 xenoMrna,406 xenoMrna,421 mt chainDm6,12 chainDm6,79 chainDm6,327 chainNetDm6,13 chainNetDm6,82 chainNetDm6,330 chainNetDm6Viewchain,10 chainNetDm6Viewnet,10 netDm6,12 netDm6,79 netDm6,327 much chainDm6,906 chainDm6,923 chainNetDm6,909 chainNetDm6,926 netDm6,906 netDm6,923 mujica uniprot,1967 multiple chainDm6,208 chainNetDm6,211 est,651 intronEst,726 mrna,365 netDm6,208 uniprot,58 uniprot,1067 uniprot,1095 xenoMrna,438 xenoRefGene,236 must intronEst,63 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainDm6,197 chainNetDm6,200 netDm6,197 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 myers blastDm2FB,173 name chainDm6,388 chainNetDm6,391 est,201 intronEst,276 mrna,147 netDm6,388 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoMrna,221 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainDm6,259 chainNetDm6,262 netDm6,259 xenoRefGene,131 native augustusGene,295 natl chainDm6,1093 chainNetDm6,1096 netDm6,1093 natural chainDm6,844 chainNetDm6,847 netDm6,844 nbci uniprot,822 nbsp chainDm6,695 chainNetDm6,698 netDm6,695 nc48s gold,200 ncbi blastDm2FB,157 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 xenoRefGene,29 xenoRefGene,290 necessary chainDm6,828 chainNetDm6,831 netDm6,828 nematodes augustusGene,211 net chainDm6,40 chainDm6,275 chainDm6,278 chainDm6,401 chainDm6,782 chainNetDm6,4 chainNetDm6,17 chainNetDm6,43 chainNetDm6,278 chainNetDm6,281 chainNetDm6,404 chainNetDm6,785 chainNetDm6Viewchain,14 chainNetDm6Viewnet,1 chainNetDm6Viewnet,14 netDm6,3 netDm6,15 netDm6,40 netDm6,275 netDm6,278 netDm6,401 netDm6,782 netclass chainDm6,898 chainDm6,1021 chainNetDm6,901 chainNetDm6,1024 netDm6,898 netDm6,1021 nets chainDm6,1008 chainNetDm6,1011 netDm6,1008 netsyntenic chainDm6,866 chainDm6,1019 chainNetDm6,869 chainNetDm6,1022 netDm6,866 netDm6,1019 new augustusGene,329 newer est,519 intronEst,594 rmsk,236 next blastDm2FB,72 chainDm6,367 chainDm6,396 chainNetDm6,370 chainNetDm6,399 geneid,88 netDm6,367 netDm6,396 nig augustusGene,270 no blastDm2FB,109 est,95 intronEst,170 microsat,73 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 non-alignable chainDm6,55 chainNetDm6,58 netDm6,55 non-coding augustusGene,75 xenoRefGene,184 non-d xenoMrna,3 xenoRefGene,3 non-mrna est,588 intronEst,663 non-protein-coding xenoRefGene,18 xenoRefGene,192 nonsyn chainDm6,573 chainNetDm6,576 netDm6,573 nor xenoMrna,126 not chainDm6,833 chainNetDm6,836 est,341 est,448 est,475 est,489 gap,115 intronEst,416 intronEst,523 intronEst,550 intronEst,564 mrna,287 netDm6,833 rmsk,272 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 xenoMrna,122 xenoMrna,361 note est,619 intronEst,694 rmsk,230 uniprot,695 novo augustusGene,304 now uniprot,1680 ns chainDm6,913 chainNetDm6,916 netDm6,913 nuclear rmsk,126 rmsk,134 nucleic est,723 intronEst,798 microsat,125 mrna,435 simpleRepeat,85 uniprot,1997 xenoMrna,509 number augustusGene,153 intronEst,147 rmsk,203 oacute geneid,24 geneid,40 observed uniprot,1114 obtain uniprot,1803 obtained augustusGene,126 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 blastDm2FB,186 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastDm2FB,22 blastDm2FB,38 blastDm2FB,122 blastDm2FB,134 blastDm2FB,142 blastDm2FB,155 chainDm6,23 chainDm6,70 chainDm6,195 chainDm6,215 chainDm6,268 chainDm6,291 chainDm6,379 chainDm6,389 chainDm6,507 chainDm6,527 chainDm6,664 chainDm6,669 chainDm6,687 chainDm6,707 chainDm6,907 chainDm6,982 chainDm6,1004 chainDm6,1028 chainDm6,1042 chainNetDm6,26 chainNetDm6,73 chainNetDm6,198 chainNetDm6,218 chainNetDm6,271 chainNetDm6,294 chainNetDm6,382 chainNetDm6,392 chainNetDm6,510 chainNetDm6,530 chainNetDm6,667 chainNetDm6,672 chainNetDm6,690 chainNetDm6,710 chainNetDm6,910 chainNetDm6,985 chainNetDm6,1007 chainNetDm6,1031 chainNetDm6,1045 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,466 est,482 est,500 est,517 est,579 est,587 est,591 est,671 gap,20 gap,49 gap,55 gap,83 gap,123 gap,132 gcPercent,20 geneid,28 geneid,35 geneid,101 geneid,104 geneid,113 geneid,124 geneid,135 geneid,138 geneid,147 genscan,43 genscan,110 genscan,134 genscan,212 gold,15 gold,48 gold,109 gold,117 gold,134 gold,214 gold,230 gold,284 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,541 intronEst,557 intronEst,575 intronEst,592 intronEst,654 intronEst,662 intronEst,666 intronEst,746 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,385 netDm6,23 netDm6,70 netDm6,195 netDm6,215 netDm6,268 netDm6,291 netDm6,379 netDm6,389 netDm6,507 netDm6,527 netDm6,664 netDm6,669 netDm6,687 netDm6,707 netDm6,907 netDm6,982 netDm6,1004 netDm6,1028 netDm6,1042 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 simpleRepeat,40 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoMrna,18 xenoMrna,58 xenoMrna,76 xenoMrna,98 xenoMrna,108 xenoMrna,157 xenoMrna,196 xenoMrna,222 xenoMrna,233 xenoMrna,269 xenoMrna,327 xenoMrna,459 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,224 xenoRefGene,256 off chainDm6,358 chainDm6,364 chainNetDm6,361 chainNetDm6,367 netDm6,358 netDm6,364 xenoRefGene,134 offers genscan,79 often chainDm6,226 chainDm6,238 chainNetDm6,229 chainNetDm6,241 netDm6,226 netDm6,238 ograve geneid,42 older uniprot,1560 uniprot,1647 oligo-dt est,459 intronEst,534 on augustusGene,29 augustusGene,37 augustusGene,151 blastDm2FB,164 chainDm6,346 chainDm6,372 chainDm6,475 chainDm6,489 chainDm6,539 chainDm6,544 chainDm6,559 chainDm6,794 chainNetDm6,349 chainNetDm6,375 chainNetDm6,478 chainNetDm6,492 chainNetDm6,542 chainNetDm6,547 chainNetDm6,562 chainNetDm6,797 est,232 est,270 gap,52 genscan,27 genscan,52 intronEst,307 intronEst,345 mrna,178 mrna,216 netDm6,346 netDm6,372 netDm6,475 netDm6,489 netDm6,539 netDm6,544 netDm6,559 netDm6,794 rmsk,74 rmsk,243 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoMrna,252 xenoMrna,290 once uniprot,647 one augustusGene,169 chainDm6,203 chainDm6,380 chainDm6,526 chainDm6,821 chainDm6,917 chainNetDm6,206 chainNetDm6,383 chainNetDm6,529 chainNetDm6,824 chainNetDm6,920 est,173 est,273 est,306 gold,176 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 netDm6,203 netDm6,380 netDm6,526 netDm6,821 netDm6,917 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 xenoMrna,193 xenoMrna,293 xenoMrna,326 ones uniprot,1041 ongoing uniprot,1569 only chainDm6,376 chainNetDm6,379 est,157 est,286 est,359 est,392 est,662 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,737 microsat,61 mrna,103 mrna,232 mrna,305 mrna,376 netDm6,376 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoMrna,177 xenoMrna,306 xenoMrna,379 xenoMrna,449 xenoRefGene,201 xenoRefGene,247 opposite chainDm6,571 chainNetDm6,574 netDm6,571 option augustusGene,167 augustusGene,187 est,405 genscan,94 intronEst,480 mrna,342 xenoMrna,416 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options genscan,85 or blastDm2FB,210 chainDm6,36 chainDm6,141 chainDm6,165 chainDm6,198 chainDm6,510 chainDm6,889 chainDm6,918 chainNetDm6,39 chainNetDm6,144 chainNetDm6,168 chainNetDm6,201 chainNetDm6,513 chainNetDm6,892 chainNetDm6,921 est,174 est,298 est,317 est,326 est,391 est,441 est,473 est,487 gap,108 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,516 intronEst,548 intronEst,562 mrna,120 mrna,244 mrna,263 mrna,272 netDm6,36 netDm6,141 netDm6,165 netDm6,198 netDm6,510 netDm6,889 netDm6,918 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoMrna,94 xenoMrna,194 xenoMrna,318 xenoMrna,337 xenoMrna,346 xenoRefGene,132 order gap,46 uniprot,872 ordered gold,147 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 xenoMrna,218 xenoMrna,224 organism chainDm6,355 chainDm6,385 chainNetDm6,358 chainNetDm6,388 netDm6,355 netDm6,385 organism-specific blastDm2FB,104 organisms chainDm6,934 chainNetDm6,937 netDm6,934 rmsk,261 uniprot,998 xenoMrna,26 xenoRefGene,21 organizes chainDm6,641 chainNetDm6,644 netDm6,641 orientation chainDm6,572 chainNetDm6,575 gap,48 netDm6,572 xenoMrna,75 xenoMrna,97 orientations xenoMrna,107 oriented gold,149 orthologs chainDm6,304 chainNetDm6,307 netDm6,304 ostell est,717 intronEst,792 mrna,429 xenoMrna,503 other augustusGene,208 chainDm6,30 chainDm6,437 chainDm6,530 chainNetDm6,33 chainNetDm6,440 chainNetDm6,533 gap,137 gold,193 gold,232 gold,270 netDm6,30 netDm6,437 netDm6,530 rmsk,165 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoMrna,1 xenoMrna,27 xenoRefGene,1 xenoRefGene,22 others uniprot,1312 uniprot,1344 otherwise est,643 intronEst,718 ouml augustusGene,269 our augustusGene,43 genscan,58 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainDm6,663 chainNetDm6,666 netDm6,663 outputs rmsk,35 outside est,578 intronEst,653 uniprot,558 over blastDm2FB,118 blastDm2FB,132 chainDm6,211 chainDm6,678 chainNetDm6,214 chainNetDm6,681 netDm6,211 netDm6,678 uniprot,522 uniprot,536 overlapping chainDm6,126 chainDm6,191 chainNetDm6,129 chainNetDm6,194 netDm6,126 netDm6,191 own uniprot,724 p genscan,205 pac chainDm6,1062 chainNetDm6,1065 netDm6,1062 pack chainDm6,248 chainNetDm6,251 netDm6,248 page est,113 genscan,78 genscan,123 intronEst,188 mrna,59 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoMrna,133 xenoRefGene,100 pages chainDm6,799 chainNetDm6,802 netDm6,799 pair gold,81 pairs gap,92 pairwise chainDm6,1040 chainDm6,1058 chainNetDm6,1043 chainNetDm6,1061 netDm6,1040 netDm6,1058 paralogs chainDm6,241 chainNetDm6,244 netDm6,241 parra geneid,157 geneid,178 part blastDm2FB,154 chainDm6,290 chainNetDm6,293 geneid,34 netDm6,290 particular augustusGene,234 chainDm6,213 chainNetDm6,216 netDm6,213 uniprot,1019 parts chainDm6,45 chainDm6,56 chainNetDm6,48 chainNetDm6,59 netDm6,45 netDm6,56 xenoMrna,70 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 path gold,27 gold,34 gold,59 patterns augustusGene,56 penalty blastDm2FB,111 pennsylvania chainDm6,945 chainDm6,1048 chainNetDm6,948 chainNetDm6,1051 netDm6,945 netDm6,1048 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides blastDm2FB,24 unipLocSignal,5 uniprot,239 uniprot,512 percent gcPercent,2 gcPercent,15 percentage gcPercent,3 gcPercent,19 perfect microsat,31 perhaps est,569 intronEst,644 period microsat,65 permitted rmsk,273 ph.d chainDm6,1045 chainNetDm6,1048 netDm6,1045 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 place chainDm6,818 chainNetDm6,821 netDm6,818 placed chainDm6,860 chainNetDm6,863 netDm6,860 places est,652 gold,163 intronEst,727 mrna,366 xenoMrna,439 xenoRefGene,237 plasmid est,430 intronEst,505 please uniprot,685 uniprot,1439 uniprot,1826 plus geneid,108 pmc chainDm6,1107 chainDm6,1138 chainNetDm6,1110 chainNetDm6,1141 est,735 est,753 geneid,197 intronEst,810 intronEst,828 microsat,136 mrna,447 mrna,465 netDm6,1107 netDm6,1138 simpleRepeat,96 uniprot,2008 xenoMrna,521 xenoMrna,538 xenoRefGene,310 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,754 intronEst,829 mrna,466 xenoMrna,539 xenoRefGene,311 pmc208784 chainDm6,1108 chainNetDm6,1111 netDm6,1108 pmc308779 est,736 intronEst,811 mrna,448 xenoMrna,522 pmc310871 geneid,198 pmc3245120 uniprot,2009 pmc430961 chainDm6,1139 chainNetDm6,1142 netDm6,1139 pmid augustusGene,314 augustusGene,339 chainDm6,1067 chainDm6,1105 chainDm6,1136 chainNetDm6,1070 chainNetDm6,1108 chainNetDm6,1139 est,733 est,751 geneid,176 geneid,195 genscan,229 intronEst,808 intronEst,826 microsat,134 mrna,445 mrna,463 netDm6,1067 netDm6,1105 netDm6,1136 rmsk,324 simpleRepeat,94 uniprot,2006 uniprot,2050 xenoMrna,519 xenoMrna,536 xenoRefGene,308 point est,512 intronEst,587 poly-a augustusGene,62 est,464 est,538 intronEst,539 intronEst,613 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainDm6,734 chainNetDm6,737 geneid,84 netDm6,734 uniprot,610 positions uniprot,1495 possible chainDm6,431 chainNetDm6,434 gold,247 netDm6,431 uniprot,601 possibly chainDm6,303 chainNetDm6,306 netDm6,303 simpleRepeat,18 post-processing uniprot,295 pre-mrna genscan,185 precompiled uniprot,1780 predict geneid,55 predicted blastDm2FB,27 blastDm2FB,49 geneid,77 geneid,125 uniprot,48 uniprot,193 xenoMrna,114 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastDm2FB,15 geneid,5 geneid,9 geneid,15 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 prepared uniprot,712 present rmsk,44 previous uniprot,1654 previously chainDm6,938 chainNetDm6,941 netDm6,938 primary gold,261 unipStruct,4 uniprot,360 primed est,456 intronEst,531 primer est,443 intronEst,518 priming est,539 intronEst,614 problem uniprot,1359 uniprot,1389 proc chainDm6,1092 chainNetDm6,1095 netDm6,1092 procedure uniprot,990 process chainDm6,842 chainNetDm6,845 gap,30 gold,125 netDm6,842 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainDm6,229 chainNetDm6,232 netDm6,229 processing geneid,30 geneid,149 produce blastDm2FB,202 produced est,693 gold,97 intronEst,768 mrna,405 xenoMrna,83 xenoMrna,479 xenoRefGene,275 products unipChain,5 program augustusGene,21 augustusGene,257 blastDm2FB,67 blastDm2FB,92 chainDm6,632 chainDm6,674 chainDm6,812 chainDm6,865 chainDm6,897 chainDm6,973 chainDm6,976 chainNetDm6,635 chainNetDm6,677 chainNetDm6,815 chainNetDm6,868 chainNetDm6,900 chainNetDm6,976 chainNetDm6,979 geneid,19 geneid,53 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,358 netDm6,632 netDm6,674 netDm6,812 netDm6,865 netDm6,897 netDm6,973 netDm6,976 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 uniprot,1529 programs chainDm6,1022 chainNetDm6,1025 netDm6,1022 uniprot,1877 project xenoRefGene,292 projected uniprot,800 projects est,533 est,552 est,582 intronEst,608 intronEst,627 intronEst,657 pronounced uniprot,1392 prot.bed uniprot,1931 uniprot,1933 protein blastDm2FB,125 blastDm2FB,144 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 xenoMrna,82 xenoMrna,115 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,190 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins blastDm2FB,3 blastDm2FB,11 blastDm2FB,50 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 protoc geneid,168 provide uniprot,1860 provided uniprot,817 provides uniprot,489 providing augustusGene,254 geneid,151 genscan,175 rmsk,292 provisional xenoRefGene,72 pseudogenes chainDm6,230 chainDm6,244 chainNetDm6,233 chainNetDm6,247 netDm6,230 netDm6,244 uniprot,1184 psl est,57 intronEst,135 mrna,38 uniprot,1479 xenoMrna,42 pslmap uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public est,704 intronEst,779 mrna,416 uniprot,709 xenoMrna,490 publications uniprot,38 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 putative blastDm2FB,95 pwas geneid,87 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainDm6,746 chainNetDm6,749 netDm6,746 quality est,75 mrna,56 xenoMrna,60 query blastDm2FB,124 blastDm2FB,136 rmsk,47 rmsk,61 uniprot,1484 xenoMrna,78 questions uniprot,1834 quickly mrna,330 xenoMrna,404 xenoRefGene,152 quite simpleRepeat,45 quot chainDm6,32 chainDm6,34 chainDm6,39 chainDm6,41 chainDm6,115 chainDm6,117 chainDm6,247 chainDm6,249 chainDm6,251 chainDm6,253 chainDm6,363 chainDm6,365 chainDm6,708 chainDm6,710 chainNetDm6,35 chainNetDm6,37 chainNetDm6,42 chainNetDm6,44 chainNetDm6,118 chainNetDm6,120 chainNetDm6,250 chainNetDm6,252 chainNetDm6,254 chainNetDm6,256 chainNetDm6,366 chainNetDm6,368 chainNetDm6,711 chainNetDm6,713 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 gold,287 gold,289 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 netDm6,32 netDm6,34 netDm6,39 netDm6,41 netDm6,115 netDm6,117 netDm6,247 netDm6,249 netDm6,251 netDm6,253 netDm6,363 netDm6,365 netDm6,708 netDm6,710 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 xenoMrna,261 xenoMrna,263 xenoMrna,301 xenoMrna,303 xenoMrna,317 xenoMrna,319 xenoMrna,353 xenoMrna,355 xenoMrna,370 xenoMrna,372 r augustusGene,291 chainDm6,1072 chainDm6,1118 chainNetDm6,1075 chainNetDm6,1121 geneid,161 geneid,184 netDm6,1072 netDm6,1118 r.s chainDm6,1037 chainNetDm6,1040 netDm6,1037 r4 blastDm2FB,9 random augustusGene,119 est,535 intronEst,610 random-primed est,581 intronEst,656 raney blastDm2FB,212 uniprot,1960 range uniprot,1809 ranked chainDm6,809 chainNetDm6,812 netDm6,809 rather est,536 intronEst,611 ratio geneid,112 raw uniprot,1708 rc chainDm6,1120 chainNetDm6,1123 netDm6,1120 rmsk,170 read est,434 gap,91 gold,80 intronEst,509 reads gold,225 gold,267 rearrangement chainDm6,309 chainDm6,517 chainDm6,1085 chainNetDm6,312 chainNetDm6,520 chainNetDm6,1088 netDm6,309 netDm6,517 netDm6,1085 reasonably est,502 est,525 intronEst,577 intronEst,600 recently uniprot,1186 record uniprot,496 xenoRefGene,67 reduced intronEst,100 refer genscan,144 uniprot,1827 reference uniprot,1378 uniprot,1422 xenoRefGene,31 references augustusGene,285 chainDm6,1035 chainNetDm6,1038 est,710 geneid,154 genscan,152 genscan,179 intronEst,785 microsat,113 mrna,422 netDm6,1035 rmsk,103 rmsk,303 simpleRepeat,73 uniprot,1984 xenoMrna,496 xenoRefGene,293 reflects rmsk,183 refseq uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,291 regeneron uniprot,1968 region chainDm6,214 chainDm6,420 chainNetDm6,217 chainNetDm6,423 netDm6,214 netDm6,420 uniprot,312 regions augustusGene,76 chainDm6,22 chainDm6,148 chainDm6,302 chainNetDm6,25 chainNetDm6,151 chainNetDm6,305 genscan,48 microsat,14 netDm6,22 netDm6,148 netDm6,302 simpleRepeat,39 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulaci geneid,39 related augustusGene,242 uniprot,551 relationship chainDm6,875 chainNetDm6,878 est,96 intronEst,171 netDm6,875 relative chainDm6,891 chainNetDm6,894 gap,45 netDm6,891 release chainDm6,9 chainDm6,76 chainDm6,324 chainNetDm6,10 chainNetDm6,79 chainNetDm6,327 chainNetDm6Viewchain,7 chainNetDm6Viewnet,7 gold,92 netDm6,9 netDm6,76 netDm6,324 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,160 intronEst,235 mrna,106 uniprot,681 xenoMrna,180 remain uniprot,1189 remaining blastDm2FB,198 chainDm6,714 chainNetDm6,717 netDm6,714 removed chainDm6,603 chainNetDm6,606 netDm6,603 uniprot,597 uniprot,1150 reorganizing uniprot,1987 repbase rmsk,81 rmsk,93 rmsk,306 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainDm6,972 chainNetDm6,975 netDm6,972 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainDm6,964 chainNetDm6,967 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 netDm6,964 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 repetitive rmsk,315 uniprot,1400 represent chainDm6,146 chainDm6,175 chainDm6,467 chainDm6,472 chainNetDm6,149 chainNetDm6,178 chainNetDm6,470 chainNetDm6,475 est,41 intronEst,52 netDm6,146 netDm6,175 netDm6,467 netDm6,472 represented gap,36 rmsk,49 representing gap,75 represents gold,114 reproducibility uniprot,1645 required blastDm2FB,200 requiring intronEst,88 res chainDm6,1130 chainNetDm6,1133 est,725 est,745 geneid,189 intronEst,800 intronEst,820 microsat,127 mrna,437 mrna,457 netDm6,1130 simpleRepeat,87 uniprot,1999 xenoMrna,511 xenoMrna,530 xenoRefGene,302 research rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 respect gold,171 result chainDm6,188 chainNetDm6,191 netDm6,188 uniprot,798 uniprot,1065 uniprot,1170 resulting chainDm6,622 chainNetDm6,625 gold,250 netDm6,622 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,544 intronEst,619 retroposons rmsk,144 reverse est,419 est,453 est,470 intronEst,494 intronEst,528 intronEst,545 review xenoRefGene,64 reviewed xenoRefGene,74 riestra uniprot,1972 rna est,104 est,413 geneid,29 geneid,148 intronEst,179 intronEst,488 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,233 xenoRefGene,279 rnas xenoRefGene,210 robert chainDm6,1012 chainNetDm6,1015 netDm6,1012 roderic geneid,22 role uniprot,309 rolling rmsk,171 ross chainDm6,961 chainNetDm6,964 netDm6,961 rrna rmsk,162 run chainDm6,677 chainNetDm6,680 netDm6,677 s augustusGene,104 augustusGene,221 augustusGene,319 blastDm2FB,145 chainDm6,1080 chainDm6,1097 chainDm6,1110 chainNetDm6,1083 chainNetDm6,1100 chainNetDm6,1113 geneid,25 genscan,190 genscan,194 genscan,210 netDm6,1080 netDm6,1097 netDm6,1110 rmsk,18 rmsk,252 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same chainDm6,546 chainDm6,561 chainNetDm6,549 chainNetDm6,564 netDm6,546 netDm6,561 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 xenoMrna,124 xenoMrna,129 sample augustusGene,133 sampling augustusGene,129 santa chainDm6,985 chainDm6,1030 chainNetDm6,988 chainNetDm6,1033 netDm6,985 netDm6,1030 satellite rmsk,155 scaffold gold,221 scaffolding gold,262 scheib uniprot,2012 school gold,108 schwartz chainDm6,952 chainDm6,1109 chainNetDm6,955 chainNetDm6,1112 netDm6,952 netDm6,1109 sci chainDm6,1095 chainNetDm6,1098 netDm6,1095 science genscan,203 scientific uniprot,37 scientists est,708 intronEst,783 mrna,420 xenoMrna,494 xenoRefGene,284 score chainDm6,706 chainNetDm6,709 netDm6,706 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scored geneid,79 geneid,97 scores geneid,103 geneid,137 uniprot,1085 scoring chainDm6,89 chainDm6,99 chainDm6,685 chainDm6,702 chainDm6,1057 chainNetDm6,92 chainNetDm6,102 chainNetDm6,688 chainNetDm6,705 chainNetDm6,1060 netDm6,89 netDm6,99 netDm6,685 netDm6,702 netDm6,1057 scott chainDm6,951 chainNetDm6,954 netDm6,951 screens rmsk,22 script uniprot,1549 scrna rmsk,164 search blastDm2FB,180 searls genscan,191 second xenoMrna,93 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 rmsk,104 uniprot,897 sections chainDm6,832 chainNetDm6,835 netDm6,832 see augustusGene,42 blastDm2FB,166 genscan,57 intronEst,118 microsat,101 rmsk,278 simpleRepeat,63 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,200 select genscan,90 xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 uniprot,986 xenoMrna,305 xenoMrna,321 xenoMrna,374 selecting microsat,60 semi-markov augustusGene,117 sep chainDm6,1100 chainNetDm6,1103 netDm6,1100 rmsk,320 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 blastDm2FB,46 blastDm2FB,88 chainDm6,182 chainDm6,313 chainDm6,1060 chainNetDm6,185 chainNetDm6,316 chainNetDm6,1063 est,21 est,92 est,390 est,399 est,545 est,683 est,698 est,705 geneid,82 gold,40 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,620 intronEst,758 intronEst,773 intronEst,780 mrna,336 mrna,397 mrna,410 mrna,417 netDm6,182 netDm6,313 netDm6,1060 rmsk,48 rmsk,62 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 xenoMrna,79 xenoMrna,103 xenoMrna,111 xenoMrna,410 xenoMrna,471 xenoMrna,484 xenoMrna,491 xenoRefGene,268 xenoRefGene,280 sequences blastDm2FB,76 est,32 est,564 est,572 geneid,60 intronEst,43 intronEst,639 intronEst,647 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoMrna,116 xenoRefGene,32 sequencing chainDm6,914 chainNetDm6,917 gap,6 gcPercent,11 gold,7 gold,101 netDm6,914 server uniprot,1699 uniprot,1745 set blastDm2FB,160 gap,119 geneid,123 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 several gold,118 sf blastDm2FB,168 shaded est,70 mrna,51 xenoMrna,55 shading intronEst,143 rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 uniprot,460 uniprot,978 shotgun gold,132 gold,292 should est,321 est,597 intronEst,396 intronEst,672 mrna,267 xenoMrna,341 show intronEst,31 intronEst,64 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown chainDm6,47 chainDm6,60 chainNetDm6,50 chainNetDm6,63 est,150 gold,62 intronEst,225 microsat,48 mrna,96 netDm6,47 netDm6,60 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 xenoMrna,170 shows augustusGene,15 augustusGene,108 chainDm6,21 chainDm6,68 chainDm6,280 chainNetDm6,24 chainNetDm6,71 chainNetDm6,283 est,15 gcPercent,17 geneid,13 genscan,13 gold,11 intronEst,16 mrna,16 netDm6,21 netDm6,68 netDm6,280 uniprot,14 uniprot,484 xenoRefGene,14 side est,560 gap,54 intronEst,635 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 signs intronEst,32 sim4 gold,201 sim6 gold,203 similar uniprot,1403 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simulans blastDm2FB,45 blastDm2FB,87 blastDm2FB,97 chainDm6,84 chainDm6,112 chainDm6,171 chainDm6,218 chainDm6,286 chainDm6,294 chainDm6,600 chainDm6,654 chainNetDm6,87 chainNetDm6,115 chainNetDm6,174 chainNetDm6,221 chainNetDm6,289 chainNetDm6,297 chainNetDm6,603 chainNetDm6,657 est,2 est,5 est,19 est,608 gold,18 gold,95 gold,121 gold,138 gold,195 gold,216 gold,235 intronEst,4 intronEst,20 intronEst,121 intronEst,683 mrna,2 mrna,5 mrna,20 mrna,348 netDm6,84 netDm6,112 netDm6,171 netDm6,218 netDm6,286 netDm6,294 netDm6,600 netDm6,654 xenoMrna,4 xenoMrna,30 xenoMrna,427 xenoRefGene,4 xenoRefGene,25 xenoRefGene,216 simultaneously chainDm6,113 chainNetDm6,116 netDm6,113 since chainDm6,595 chainNetDm6,598 netDm6,595 uniprot,1383 sine rmsk,128 single blastDm2FB,113 chainDm6,140 chainDm6,149 chainDm6,646 chainDm6,652 chainNetDm6,143 chainNetDm6,152 chainNetDm6,649 chainNetDm6,655 est,594 est,647 intronEst,669 intronEst,722 mrna,361 netDm6,140 netDm6,149 netDm6,646 netDm6,652 uniprot,141 xenoMrna,434 xenoRefGene,232 single-lined chainDm6,223 chainNetDm6,226 netDm6,223 single-read est,31 intronEst,42 site genscan,157 sites augustusGene,54 augustusGene,59 geneid,71 geneid,94 geneid,107 uniprot,342 uniprot,354 uniprot,578 uniprot,585 six gold,192 size blastDm2FB,107 gap,96 gap,113 skepticism est,602 intronEst,677 smallsize chainDm6,732 chainNetDm6,735 netDm6,732 smit chainDm6,969 chainDm6,1113 chainNetDm6,972 chainNetDm6,1116 netDm6,969 netDm6,1113 rmsk,17 rmsk,288 snrna rmsk,163 so chainDm6,459 chainNetDm6,462 netDm6,459 uniprot,1135 uniprot,1430 soft-masked rmsk,264 software rmsk,221 some est,158 est,516 est,532 est,635 intronEst,233 intronEst,591 intronEst,607 intronEst,710 mrna,104 uniprot,318 xenoMrna,178 sometimes simpleRepeat,50 uniprot,983 sorted chainDm6,801 chainNetDm6,804 netDm6,801 uniprot,556 source uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 space uniprot,1990 spaces gold,60 spain geneid,48 span chainDm6,418 chainNetDm6,421 netDm6,418 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainDm6,130 chainDm6,185 chainDm6,204 chainDm6,920 chainNetDm6,133 chainNetDm6,188 chainNetDm6,207 chainNetDm6,923 netDm6,130 netDm6,185 netDm6,204 netDm6,920 species-specific augustusGene,156 specific est,197 intronEst,272 mrna,143 simpleRepeat,53 xenoMrna,217 splice augustusGene,53 geneid,70 genscan,156 uniprot,144 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,89 split chainDm6,601 chainNetDm6,604 netDm6,601 st gold,112 staff uniprot,42 uniprot,1965 stage uniprot,1228 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,524 geneid,72 intronEst,599 uniprot,125 uniprot,209 uniprot,1821 state chainDm6,946 chainDm6,1049 chainNetDm6,949 chainNetDm6,1052 netDm6,946 netDm6,1049 statistical augustusGene,47 stdout uniprot,1825 stefanie augustusGene,267 step geneid,69 uniprot,901 uniprot,1155 uniprot,1330 stop geneid,74 storage chainDm6,1003 chainNetDm6,1006 netDm6,1003 stored uniprot,1733 strand chainDm6,263 chainNetDm6,266 est,77 intronEst,152 netDm6,263 xenoMrna,62 strands uniprot,365 strategy uniprot,1120 uniprot,1193 structure augustusGene,113 geneid,65 geneid,129 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainDm6,307 chainNetDm6,310 netDm6,307 subcellular uniprot,553 submitted est,700 intronEst,775 mrna,412 xenoMrna,486 submodel augustusGene,331 subsections chainDm6,667 chainNetDm6,670 netDm6,667 subset est,136 intronEst,211 microsat,54 mrna,82 xenoMrna,156 substantial chainDm6,181 chainNetDm6,184 netDm6,181 subtrack uniprot,411 subtracks chainDm6,35 chainDm6,42 chainNetDm6,38 chainNetDm6,45 netDm6,35 netDm6,42 uniprot,59 uniprot,72 uniprot,520 uniprot,548 successful est,554 intronEst,629 such chainDm6,881 chainNetDm6,884 netDm6,881 uniprot,306 suffix uniprot,1255 suggested gold,168 suitable uniprot,1868 sum geneid,100 geneid,134 suppl augustusGene,336 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainDm6,1063 chainNetDm6,1066 netDm6,1063 syn chainDm6,542 chainNetDm6,545 netDm6,542 syntenic chainDm6,301 chainDm6,888 chainNetDm6,304 chainNetDm6,891 netDm6,301 netDm6,888 syntenically augustusGene,297 synteny chainDm6,38 chainNetDm6,41 netDm6,38 system chainDm6,90 chainNetDm6,93 netDm6,90 uniprot,1353 uniprot,1784 systems chainDm6,100 chainNetDm6,103 netDm6,100 t-100-25-9091 chainDm6,700 chainNetDm6,703 netDm6,700 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 uniprot,1720 xenoMrna,242 xenoMrna,245 xenoMrna,264 tables uniprot,1301 tablesize chainDm6,730 chainNetDm6,733 netDm6,730 tags est,22 intronEst,23 tail est,465 intronEst,540 taken est,436 intronEst,511 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 xenoMrna,184 tblastn blastDm2FB,20 blastDm2FB,91 blastDm2FB,152 uniprot,1476 techniques est,530 intronEst,605 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term est,171 intronEst,246 mrna,117 xenoMrna,191 terminal rmsk,138 terms est,215 intronEst,290 mrna,161 xenoMrna,235 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 uniprot,1763 xenoMrna,198 xenoMrna,238 xenoMrna,278 tgap chainDm6,758 chainNetDm6,761 netDm6,758 than blastDm2FB,120 chainDm6,95 chainDm6,531 chainNetDm6,98 chainNetDm6,534 est,272 est,537 gcPercent,42 intronEst,347 intronEst,612 mrna,218 netDm6,95 netDm6,531 rmsk,237 xenoMrna,28 xenoMrna,292 xenoRefGene,23 xenoRefGene,226 thanks augustusGene,248 geneid,143 genscan,170 rmsk,285 uniprot,1974 that blastDm2FB,77 blastDm2FB,130 chainDm6,26 chainDm6,51 chainDm6,91 chainDm6,153 chainDm6,179 chainDm6,390 chainDm6,417 chainDm6,439 chainDm6,591 chainDm6,851 chainDm6,862 chainNetDm6,29 chainNetDm6,54 chainNetDm6,94 chainNetDm6,156 chainNetDm6,182 chainNetDm6,393 chainNetDm6,420 chainNetDm6,442 chainNetDm6,594 chainNetDm6,854 chainNetDm6,865 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,620 est,641 gap,87 genscan,141 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,695 intronEst,716 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 netDm6,26 netDm6,51 netDm6,91 netDm6,153 netDm6,179 netDm6,390 netDm6,417 netDm6,439 netDm6,591 netDm6,851 netDm6,862 rmsk,42 rmsk,231 rmsk,239 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoMrna,51 xenoMrna,140 xenoMrna,247 xenoMrna,271 xenoMrna,308 xenoMrna,323 xenoMrna,340 xenoMrna,364 xenoMrna,382 xenoMrna,399 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastDm2FB,23 blastDm2FB,26 blastDm2FB,33 blastDm2FB,43 blastDm2FB,52 blastDm2FB,60 blastDm2FB,65 blastDm2FB,73 blastDm2FB,85 blastDm2FB,90 blastDm2FB,94 blastDm2FB,112 blastDm2FB,123 blastDm2FB,135 blastDm2FB,143 blastDm2FB,156 blastDm2FB,197 chainDm6,24 chainDm6,43 chainDm6,65 chainDm6,82 chainDm6,131 chainDm6,144 chainDm6,161 chainDm6,169 chainDm6,216 chainDm6,220 chainDm6,246 chainDm6,256 chainDm6,261 chainDm6,269 chainDm6,277 chainDm6,281 chainDm6,292 chainDm6,310 chainDm6,320 chainDm6,338 chainDm6,353 chainDm6,359 chainDm6,362 chainDm6,377 chainDm6,383 chainDm6,387 chainDm6,407 chainDm6,413 chainDm6,427 chainDm6,445 chainDm6,462 chainDm6,465 chainDm6,470 chainDm6,483 chainDm6,496 chainDm6,498 chainDm6,505 chainDm6,508 chainDm6,515 chainDm6,521 chainDm6,534 chainDm6,545 chainDm6,549 chainDm6,552 chainDm6,560 chainDm6,564 chainDm6,570 chainDm6,581 chainDm6,584 chainDm6,596 chainDm6,605 chainDm6,607 chainDm6,615 chainDm6,621 chainDm6,630 chainDm6,633 chainDm6,665 chainDm6,670 chainDm6,679 chainDm6,683 chainDm6,690 chainDm6,713 chainDm6,721 chainDm6,791 chainDm6,795 chainDm6,803 chainDm6,807 chainDm6,811 chainDm6,819 chainDm6,864 chainDm6,874 chainDm6,893 chainDm6,896 chainDm6,908 chainDm6,932 chainDm6,974 chainDm6,980 chainDm6,998 chainDm6,1005 chainDm6,1017 chainDm6,1026 chainDm6,1047 chainDm6,1087 chainNetDm6,27 chainNetDm6,46 chainNetDm6,68 chainNetDm6,85 chainNetDm6,134 chainNetDm6,147 chainNetDm6,164 chainNetDm6,172 chainNetDm6,219 chainNetDm6,223 chainNetDm6,249 chainNetDm6,259 chainNetDm6,264 chainNetDm6,272 chainNetDm6,280 chainNetDm6,284 chainNetDm6,295 chainNetDm6,313 chainNetDm6,323 chainNetDm6,341 chainNetDm6,356 chainNetDm6,362 chainNetDm6,365 chainNetDm6,380 chainNetDm6,386 chainNetDm6,390 chainNetDm6,410 chainNetDm6,416 chainNetDm6,430 chainNetDm6,448 chainNetDm6,465 chainNetDm6,468 chainNetDm6,473 chainNetDm6,486 chainNetDm6,499 chainNetDm6,501 chainNetDm6,508 chainNetDm6,511 chainNetDm6,518 chainNetDm6,524 chainNetDm6,537 chainNetDm6,548 chainNetDm6,552 chainNetDm6,555 chainNetDm6,563 chainNetDm6,567 chainNetDm6,573 chainNetDm6,584 chainNetDm6,587 chainNetDm6,599 chainNetDm6,608 chainNetDm6,610 chainNetDm6,618 chainNetDm6,624 chainNetDm6,633 chainNetDm6,636 chainNetDm6,668 chainNetDm6,673 chainNetDm6,682 chainNetDm6,686 chainNetDm6,693 chainNetDm6,716 chainNetDm6,724 chainNetDm6,794 chainNetDm6,798 chainNetDm6,806 chainNetDm6,810 chainNetDm6,814 chainNetDm6,822 chainNetDm6,867 chainNetDm6,877 chainNetDm6,896 chainNetDm6,899 chainNetDm6,911 chainNetDm6,935 chainNetDm6,977 chainNetDm6,983 chainNetDm6,1001 chainNetDm6,1008 chainNetDm6,1020 chainNetDm6,1029 chainNetDm6,1050 chainNetDm6,1090 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,424 est,438 est,452 est,463 est,469 est,479 est,483 est,494 est,498 est,505 est,514 est,518 est,528 est,548 est,574 est,580 est,615 est,621 est,653 est,656 est,672 est,681 est,702 est,740 gap,13 gap,18 gap,28 gap,44 gap,50 gap,56 gap,72 gap,76 gap,93 gap,111 gcPercent,13 gcPercent,18 geneid,17 geneid,36 geneid,67 geneid,81 geneid,93 geneid,99 geneid,102 geneid,105 geneid,109 geneid,110 geneid,122 geneid,127 geneid,133 geneid,136 geneid,139 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,26 gold,29 gold,32 gold,38 gold,46 gold,58 gold,64 gold,89 gold,91 gold,99 gold,104 gold,123 gold,135 gold,136 gold,141 gold,153 gold,157 gold,165 gold,173 gold,182 gold,210 gold,215 gold,227 gold,231 gold,243 gold,249 gold,256 gold,260 gold,269 gold,275 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,499 intronEst,513 intronEst,527 intronEst,538 intronEst,544 intronEst,554 intronEst,558 intronEst,569 intronEst,573 intronEst,580 intronEst,589 intronEst,593 intronEst,603 intronEst,623 intronEst,649 intronEst,655 intronEst,690 intronEst,696 intronEst,728 intronEst,731 intronEst,747 intronEst,756 intronEst,777 intronEst,815 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,353 mrna,356 mrna,367 mrna,370 mrna,386 mrna,395 mrna,401 mrna,414 mrna,452 netDm6,24 netDm6,43 netDm6,65 netDm6,82 netDm6,131 netDm6,144 netDm6,161 netDm6,169 netDm6,216 netDm6,220 netDm6,246 netDm6,256 netDm6,261 netDm6,269 netDm6,277 netDm6,281 netDm6,292 netDm6,310 netDm6,320 netDm6,338 netDm6,353 netDm6,359 netDm6,362 netDm6,377 netDm6,383 netDm6,387 netDm6,407 netDm6,413 netDm6,427 netDm6,445 netDm6,462 netDm6,465 netDm6,470 netDm6,483 netDm6,496 netDm6,498 netDm6,505 netDm6,508 netDm6,515 netDm6,521 netDm6,534 netDm6,545 netDm6,549 netDm6,552 netDm6,560 netDm6,564 netDm6,570 netDm6,581 netDm6,584 netDm6,596 netDm6,605 netDm6,607 netDm6,615 netDm6,621 netDm6,630 netDm6,633 netDm6,665 netDm6,670 netDm6,679 netDm6,683 netDm6,690 netDm6,713 netDm6,721 netDm6,791 netDm6,795 netDm6,803 netDm6,807 netDm6,811 netDm6,819 netDm6,864 netDm6,874 netDm6,893 netDm6,896 netDm6,908 netDm6,932 netDm6,974 netDm6,980 netDm6,998 netDm6,1005 netDm6,1017 netDm6,1026 netDm6,1047 netDm6,1087 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 simpleRepeat,60 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 xenoMrna,38 xenoMrna,49 xenoMrna,61 xenoMrna,71 xenoMrna,74 xenoMrna,77 xenoMrna,84 xenoMrna,92 xenoMrna,96 xenoMrna,99 xenoMrna,105 xenoMrna,123 xenoMrna,128 xenoMrna,131 xenoMrna,146 xenoMrna,150 xenoMrna,160 xenoMrna,172 xenoMrna,182 xenoMrna,187 xenoMrna,197 xenoMrna,202 xenoMrna,209 xenoMrna,220 xenoMrna,223 xenoMrna,226 xenoMrna,231 xenoMrna,241 xenoMrna,244 xenoMrna,250 xenoMrna,260 xenoMrna,267 xenoMrna,276 xenoMrna,286 xenoMrna,296 xenoMrna,328 xenoMrna,335 xenoMrna,349 xenoMrna,358 xenoMrna,366 xenoMrna,375 xenoMrna,384 xenoMrna,401 xenoMrna,408 xenoMrna,420 xenoMrna,425 xenoMrna,440 xenoMrna,443 xenoMrna,460 xenoMrna,469 xenoMrna,475 xenoMrna,488 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,189 xenoRefGene,202 xenoRefGene,209 xenoRefGene,214 xenoRefGene,238 xenoRefGene,241 xenoRefGene,257 xenoRefGene,266 xenoRefGene,289 xenoRefGene,297 their uniprot,62 uniprot,723 uniprot,1101 them chainDm6,826 chainNetDm6,829 netDm6,826 rmsk,277 uniprot,20 uniprot,173 uniprot,483 then chainDm6,676 chainDm6,815 chainDm6,900 chainNetDm6,679 chainNetDm6,818 chainNetDm6,903 gold,82 gold,160 netDm6,676 netDm6,815 netDm6,900 uniprot,1083 uniprot,1516 there est,583 intronEst,658 uniprot,705 uniprot,1092 xenoMrna,117 therefore uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainDm6,58 chainDm6,114 chainDm6,432 chainDm6,688 chainNetDm6,61 chainNetDm6,117 chainNetDm6,435 chainNetDm6,691 est,551 gap,15 geneid,152 intronEst,626 microsat,24 netDm6,58 netDm6,114 netDm6,432 netDm6,688 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 uniprot,99 uniprot,130 uniprot,1160 thesis chainDm6,1046 chainNetDm6,1049 netDm6,1046 they chainDm6,349 chainNetDm6,352 netDm6,349 uniprot,179 thick chainDm6,49 chainNetDm6,52 netDm6,49 this augustusGene,13 augustusGene,106 augustusGene,224 blastDm2FB,17 blastDm2FB,203 chainDm6,19 chainDm6,186 chainDm6,316 chainDm6,419 chainDm6,719 chainDm6,841 chainNetDm6,22 chainNetDm6,189 chainNetDm6,319 chainNetDm6,422 chainNetDm6,722 chainNetDm6,844 est,13 est,50 est,115 est,142 est,367 est,404 est,556 est,592 est,605 est,687 est,690 gap,8 gap,41 gap,78 gcPercent,58 geneid,11 genscan,11 genscan,65 genscan,128 gold,9 gold,23 gold,281 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,631 intronEst,667 intronEst,680 intronEst,762 intronEst,765 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 netDm6,19 netDm6,186 netDm6,316 netDm6,419 netDm6,719 netDm6,841 rmsk,10 rmsk,51 rmsk,114 rmsk,301 simpleRepeat,12 simpleRepeat,31 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 xenoMrna,12 xenoMrna,35 xenoMrna,65 xenoMrna,135 xenoMrna,162 xenoMrna,387 xenoMrna,415 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,181 xenoRefGene,206 xenoRefGene,272 those est,360 est,393 intronEst,435 intronEst,468 microsat,62 mrna,306 rmsk,238 uniprot,729 xenoMrna,380 xenoMrna,450 xenoRefGene,220 thousands chainDm6,267 chainNetDm6,270 netDm6,267 three uniprot,1227 three-step uniprot,989 through gap,71 gold,28 rmsk,268 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 thus gold,248 time chainDm6,824 chainNetDm6,827 netDm6,824 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 xenoMrna,227 xenoMrna,262 xenoMrna,277 tissues est,250 intronEst,325 mrna,196 xenoMrna,270 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastDm2FB,42 blastDm2FB,68 blastDm2FB,201 chainDm6,29 chainDm6,81 chainDm6,157 chainDm6,228 chainDm6,240 chainDm6,340 chainDm6,351 chainDm6,356 chainDm6,368 chainDm6,374 chainDm6,397 chainDm6,478 chainDm6,492 chainDm6,576 chainDm6,681 chainDm6,817 chainDm6,829 chainDm6,869 chainDm6,892 chainDm6,902 chainNetDm6,32 chainNetDm6,84 chainNetDm6,160 chainNetDm6,231 chainNetDm6,243 chainNetDm6,343 chainNetDm6,354 chainNetDm6,359 chainNetDm6,371 chainNetDm6,377 chainNetDm6,400 chainNetDm6,481 chainNetDm6,495 chainNetDm6,579 chainNetDm6,684 chainNetDm6,820 chainNetDm6,832 chainNetDm6,872 chainNetDm6,895 chainNetDm6,905 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,409 est,478 est,543 est,603 est,701 gap,120 gap,129 geneid,54 geneid,144 geneid,164 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,36 gold,87 gold,172 gold,239 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,484 intronEst,553 intronEst,618 intronEst,678 intronEst,776 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,413 netDm6,29 netDm6,81 netDm6,157 netDm6,228 netDm6,240 netDm6,340 netDm6,351 netDm6,356 netDm6,368 netDm6,374 netDm6,397 netDm6,478 netDm6,492 netDm6,576 netDm6,681 netDm6,817 netDm6,829 netDm6,869 netDm6,892 netDm6,902 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 simpleRepeat,81 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 xenoMrna,89 xenoMrna,144 xenoMrna,181 xenoMrna,185 xenoMrna,200 xenoMrna,207 xenoMrna,211 xenoMrna,229 xenoMrna,249 xenoMrna,256 xenoMrna,344 xenoMrna,393 xenoMrna,403 xenoMrna,487 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,199 together blastDm2FB,101 chainDm6,137 chainNetDm6,140 netDm6,137 tolerate chainDm6,104 chainNetDm6,107 netDm6,104 tolerated uniprot,1257 tool blastDm2FB,159 blastDm2FB,181 est,743 intronEst,818 mrna,455 uniprot,1766 uniprot,1797 xenoMrna,528 xenoRefGene,300 tools rmsk,294 uniprot,1873 top chainDm6,533 chainNetDm6,536 netDm6,533 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level chainDm6,408 chainDm6,428 chainNetDm6,411 chainNetDm6,431 netDm6,408 netDm6,428 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 blastDm2FB,18 blastDm2FB,56 blastDm2FB,204 chainDm6,20 chainDm6,64 chainDm6,67 chainDm6,133 chainDm6,276 chainDm6,279 chainDm6,335 chainDm6,370 chainDm6,402 chainDm6,589 chainDm6,720 chainDm6,783 chainNetDm6,23 chainNetDm6,67 chainNetDm6,70 chainNetDm6,136 chainNetDm6,279 chainNetDm6,282 chainNetDm6,338 chainNetDm6,373 chainNetDm6,405 chainNetDm6,592 chainNetDm6,723 chainNetDm6,786 est,14 est,51 est,116 est,141 est,153 est,368 est,606 est,688 est,691 gap,9 gap,42 gcPercent,16 gcPercent,59 geneid,12 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,24 gold,282 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,681 intronEst,763 intronEst,766 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,403 netDm6,20 netDm6,64 netDm6,67 netDm6,133 netDm6,276 netDm6,279 netDm6,335 netDm6,370 netDm6,402 netDm6,589 netDm6,720 netDm6,783 rmsk,11 rmsk,52 rmsk,115 rmsk,302 simpleRepeat,13 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 xenoMrna,13 xenoMrna,36 xenoMrna,66 xenoMrna,136 xenoMrna,161 xenoMrna,173 xenoMrna,388 xenoMrna,477 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,273 tracks augustusGene,41 chainDm6,797 chainNetDm6,800 est,59 genscan,56 genscan,74 intronEst,137 mrna,40 netDm6,797 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoMrna,44 xenoRefGene,56 traditional chainDm6,96 chainNetDm6,99 netDm6,96 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,420 intronEst,55 intronEst,495 transcript est,515 intronEst,590 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,471 intronEst,546 transcription est,101 est,454 est,501 est,523 intronEst,176 intronEst,529 intronEst,576 intronEst,598 transcriptional genscan,28 transcripts augustusGene,124 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 translated xenoMrna,15 xenoMrna,81 xenoMrna,101 xenoMrna,430 translation augustusGene,57 translational genscan,29 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposons chainDm6,590 chainDm6,616 chainDm6,927 chainNetDm6,593 chainNetDm6,619 chainNetDm6,930 netDm6,590 netDm6,616 netDm6,927 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainDm6,825 chainNetDm6,828 netDm6,825 trna rmsk,161 true augustusGene,132 turn chainDm6,357 chainNetDm6,360 netDm6,357 xenoRefGene,133 turns uniprot,370 two chainDm6,933 chainNetDm6,936 gap,81 gold,73 netDm6,933 uniprot,71 uniprot,630 uniprot,1641 xenoMrna,69 xenoMrna,106 type est,169 est,199 gold,286 intronEst,244 intronEst,274 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 xenoMrna,189 xenoMrna,219 types augustusGene,89 chainDm6,529 chainNetDm6,532 est,248 gap,82 intronEst,323 mrna,194 netDm6,529 uniprot,676 xenoMrna,268 typically est,33 est,423 gcPercent,52 intronEst,44 intronEst,498 u chainDm6,1096 chainNetDm6,1099 netDm6,1096 ucsc est,695 gcPercent,63 intronEst,770 mrna,407 rmsk,211 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoMrna,481 xenoRefGene,277 undergone xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath chainDm6,861 chainNetDm6,864 netDm6,861 unexpected uniprot,766 ungapped chainDm6,468 chainNetDm6,471 netDm6,468 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 unit geneid,174 universal uniprot,1993 university chainDm6,947 chainDm6,981 chainDm6,1027 chainDm6,1050 chainNetDm6,950 chainNetDm6,984 chainNetDm6,1030 chainNetDm6,1053 gold,106 netDm6,947 netDm6,981 netDm6,1027 netDm6,1050 unknown rmsk,173 unordered gap,106 unoriented gap,109 unplaced gold,224 gold,266 unprocessed chainDm6,243 chainNetDm6,246 est,566 intronEst,641 netDm6,243 unsequenced chainDm6,200 chainNetDm6,203 netDm6,200 unspliced est,8 est,595 intronEst,117 intronEst,670 up blastDm2FB,79 rmsk,117 update est,722 intronEst,797 mrna,434 rmsk,82 rmsk,94 rmsk,307 xenoMrna,508 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use est,166 gold,47 intronEst,241 mrna,112 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 xenoMrna,186 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainDm6,314 chainDm6,694 chainDm6,725 chainDm6,816 chainDm6,868 chainDm6,901 chainNetDm6,317 chainNetDm6,697 chainNetDm6,728 chainNetDm6,819 chainNetDm6,871 chainNetDm6,904 est,123 est,264 est,323 est,534 genscan,159 gold,35 gold,238 intronEst,198 intronEst,339 intronEst,398 intronEst,609 mrna,69 mrna,210 mrna,269 netDm6,314 netDm6,694 netDm6,725 netDm6,816 netDm6,868 netDm6,901 rmsk,213 rmsk,258 rmsk,298 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 xenoMrna,143 xenoMrna,284 xenoMrna,343 useful chainDm6,298 chainDm6,502 chainNetDm6,301 chainNetDm6,505 microsat,20 netDm6,298 netDm6,502 user est,382 intronEst,457 mrna,328 xenoMrna,402 users uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastDm2FB,64 blastDm2FB,89 blastDm2FB,102 chainDm6,86 chainDm6,629 chainDm6,790 chainNetDm6,89 chainNetDm6,632 chainNetDm6,793 est,617 geneid,83 geneid,162 gold,209 intronEst,692 microsat,90 mrna,355 netDm6,86 netDm6,629 netDm6,790 rmsk,15 rmsk,249 uniprot,217 uniprot,722 uniprot,1526 xenoMrna,429 xenoRefGene,218 usually est,40 intronEst,51 utilities blastDm2FB,199 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 xenoMrna,234 validate xenoRefGene,153 validation genscan,107 value est,274 intronEst,349 mrna,220 xenoMrna,294 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 rmsk,6 simpleRepeat,8 uniprot,438 varies gap,100 various uniprot,50 vb chainDm6,1054 chainNetDm6,1057 netDm6,1054 vector est,431 intronEst,506 version augustusGene,23 augustusGene,263 rmsk,58 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 rmsk,217 rmsk,233 uniprot,1655 vertebrate xenoMrna,19 vertebrates augustusGene,209 very est,638 intronEst,713 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view chainDm6,479 chainNetDm6,482 est,210 intronEst,285 mrna,156 netDm6,479 xenoMrna,230 viewed est,599 intronEst,674 visible uniprot,147 w blastDm2FB,170 blastDm2FB,172 chainDm6,1056 chainDm6,1076 chainDm6,1124 chainNetDm6,1059 chainNetDm6,1079 chainNetDm6,1127 gold,288 netDm6,1056 netDm6,1076 netDm6,1124 w501 gold,139 gold,142 gold,166 gold,217 gold,244 gold,257 gold,276 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastDm2FB,192 chainDm6,675 chainDm6,693 chainDm6,814 chainDm6,859 chainDm6,867 chainDm6,887 chainDm6,899 chainDm6,924 chainDm6,942 chainDm6,977 chainNetDm6,678 chainNetDm6,696 chainNetDm6,817 chainNetDm6,862 chainNetDm6,870 chainNetDm6,890 chainNetDm6,902 chainNetDm6,927 chainNetDm6,945 chainNetDm6,980 est,660 est,692 gcPercent,60 gold,159 gold,179 intronEst,735 intronEst,767 microsat,108 mrna,374 mrna,404 netDm6,675 netDm6,693 netDm6,814 netDm6,859 netDm6,867 netDm6,887 netDm6,899 netDm6,924 netDm6,942 netDm6,977 rmsk,12 simpleRepeat,68 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 xenoMrna,447 xenoMrna,478 xenoRefGene,245 xenoRefGene,274 washington gold,105 way uniprot,1459 we uniprot,1224 uniprot,1453 uniprot,1859 webb chainDm6,956 chainDm6,993 chainNetDm6,959 chainNetDm6,996 netDm6,956 netDm6,993 weekly xenoRefGene,42 weight geneid,85 well augustusGene,78 est,503 est,526 genscan,36 intronEst,578 intronEst,601 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastDm2FB,57 blastDm2FB,82 blastDm2FB,99 blastDm2FB,126 blastDm2FB,148 blastDm2FB,205 chainDm6,602 chainDm6,610 chainDm6,617 chainDm6,624 chainDm6,636 chainDm6,711 chainDm6,785 chainDm6,965 chainDm6,1009 chainDm6,1023 chainNetDm6,605 chainNetDm6,613 chainNetDm6,620 chainNetDm6,627 chainNetDm6,639 chainNetDm6,714 chainNetDm6,788 chainNetDm6,968 chainNetDm6,1012 chainNetDm6,1026 est,553 est,612 gold,144 gold,204 gold,237 intronEst,628 intronEst,687 mrna,350 mrna,398 netDm6,602 netDm6,610 netDm6,617 netDm6,624 netDm6,636 netDm6,711 netDm6,785 netDm6,965 netDm6,1009 netDm6,1023 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoMrna,422 xenoMrna,472 xenoRefGene,211 xenoRefGene,228 xenoRefGene,269 wget uniprot,1903 uniprot,1913 wgs gold,212 wheeler est,719 intronEst,794 mrna,431 xenoMrna,505 when augustusGene,188 augustusGene,238 chainDm6,430 chainNetDm6,433 est,146 est,156 est,645 intronEst,35 intronEst,221 intronEst,231 intronEst,720 mrna,92 mrna,102 mrna,359 netDm6,430 uniprot,951 uniprot,1202 uniprot,1632 xenoMrna,166 xenoMrna,176 xenoMrna,432 xenoRefGene,230 where chainDm6,207 chainNetDm6,210 gold,54 gold,164 gold,246 netDm6,207 uniprot,1192 whether chainDm6,883 chainNetDm6,886 netDm6,883 which augustusGene,159 augustusGene,227 chainDm6,347 chainDm6,640 chainDm6,848 chainNetDm6,350 chainNetDm6,643 chainNetDm6,851 est,106 est,233 est,460 est,485 est,632 geneid,32 intronEst,181 intronEst,308 intronEst,535 intronEst,560 intronEst,707 mrna,179 netDm6,347 netDm6,640 netDm6,848 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 uniprot,158 uniprot,1380 uniprot,1768 xenoMrna,253 while chainDm6,231 chainNetDm6,234 netDm6,231 white gap,67 whole chainDm6,487 chainNetDm6,490 gold,130 gold,290 netDm6,487 whose xenoMrna,80 wildcards est,260 intronEst,335 mrna,206 xenoMrna,280 will est,293 est,311 est,340 est,357 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 xenoMrna,313 xenoMrna,331 xenoMrna,360 xenoMrna,377 window gcPercent,32 windows gcPercent,8 gcPercent,33 gcPercent,43 wish est,235 intronEst,310 mrna,181 xenoMrna,255 xenoRefGene,198 with augustusGene,127 augustusGene,322 blastDm2FB,59 blastDm2FB,84 chainDm6,48 chainDm6,222 chainDm6,233 chainDm6,612 chainDm6,726 chainDm6,802 chainDm6,926 chainDm6,958 chainDm6,990 chainDm6,1127 chainNetDm6,51 chainNetDm6,225 chainNetDm6,236 chainNetDm6,615 chainNetDm6,729 chainNetDm6,805 chainNetDm6,929 chainNetDm6,961 chainNetDm6,993 chainNetDm6,1130 est,105 est,462 est,600 est,637 est,680 gap,17 gcPercent,34 gcPercent,44 gcPercent,54 geneid,62 gold,127 gold,152 gold,170 gold,206 gold,263 intronEst,180 intronEst,537 intronEst,675 intronEst,712 intronEst,755 microsat,69 microsat,76 mrna,394 netDm6,48 netDm6,222 netDm6,233 netDm6,612 netDm6,726 netDm6,802 netDm6,926 netDm6,958 netDm6,990 netDm6,1127 rmsk,195 simpleRepeat,52 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 xenoMrna,468 xenoRefGene,221 xenoRefGene,265 within est,139 est,513 est,669 gold,280 intronEst,214 intronEst,588 intronEst,744 mrna,85 mrna,383 simpleRepeat,37 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoMrna,159 xenoMrna,457 xenoRefGene,84 xenoRefGene,254 without uniprot,139 wj chainDm6,1070 chainDm6,1112 chainNetDm6,1073 chainNetDm6,1115 est,738 intronEst,813 mrna,450 netDm6,1070 netDm6,1112 xenoMrna,524 xenoRefGene,295 words uniprot,1201 worldwide est,709 intronEst,784 mrna,421 xenoMrna,495 xenoRefGene,285 written blastDm2FB,193 blastDm2FB,206 genscan,19 microsat,109 simpleRepeat,69 wustl gold,107 x uniprot,1923 xml uniprot,1510 yap chainDm6,1053 chainNetDm6,1056 netDm6,1053 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you est,234 intronEst,309 mrna,180 uniprot,655 uniprot,689 uniprot,1443 xenoMrna,254 xenoRefGene,197 your uniprot,1783 z chainDm6,1116 chainNetDm6,1119 netDm6,1116 zebrafish augustusGene,202 augustusGene,278 zhang chainDm6,954 chainDm6,1115 chainNetDm6,957 chainNetDm6,1118 netDm6,954 netDm6,1115 zheng chainDm6,953 chainNetDm6,956 netDm6,953 zinc uniprot,326 zoomed-in genscan,103