0.2 augustusGene,136 0.5 augustusGene,138 est,670 intronEst,745 mrna,384 xenoRefGene,255 000 est,630 gcPercent,30 intronEst,705 000-base gcPercent,7 1 augustusGene,310 chainDm2,571 est,728 genscan,227 intronEst,803 mrna,440 netDm2,75 netDm2,206 netDm2,540 10 geneid,192 100 augustusGene,134 chainDm2,526 chainDm2,539 microsat,70 netDm2,508 1000-2000 augustusGene,161 103-7 chainDm2,572 netDm2,541 10779490 geneid,196 10973072 rmsk,325 11484-11489 chainDm2,528 11484-9 chainDm2,541 netDm2,510 115-26 chainDm2,495 11928468 chainDm2,497 11932250 est,752 intronEst,827 mrna,464 xenoRefGene,309 12 est,748 intronEst,823 mrna,460 xenoRefGene,305 12529312 chainDm2,574 netDm2,543 127-163 genscan,206 13 chainDm2,570 netDm2,539 14500911 chainDm2,543 netDm2,512 14534192 augustusGene,340 14681350 est,734 intronEst,809 mrna,446 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,227 16 rmsk,321 16600017 geneMapper,102 18218656 augustusGene,315 18428791 geneid,177 19 augustusGene,335 1990 blastDm2FB,185 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 microsat,66 microsat,132 netDm2,109 netDm2,114 simpleRepeat,92 20 chainDm2,527 chainDm2,540 gcPercent,6 gcPercent,29 netDm2,509 2000 geneid,190 rmsk,100 rmsk,319 2002 chainDm2,494 est,746 intronEst,821 mrna,458 xenoRefGene,303 2003 augustusGene,333 chainDm2,529 chainDm2,536 chainDm2,568 netDm2,505 netDm2,537 2004 blastDm2FB,7 chainDm2,7 chainDm2,78 est,726 intronEst,801 mrna,438 netDm2,7 netDm2,58 2005 blastDm2FB,41 2006 geneMapper,97 2007 geneid,170 2008 augustusGene,308 215 blastDm2FB,188 24 augustusGene,311 243 geneid,160 geneid,183 25 blastDm2FB,39 genscan,225 xenoRefGene,262 268 genscan,226 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastDm2FB,189 est,442 est,495 est,549 intronEst,108 intronEst,517 intronEst,570 intronEst,624 microsat,68 netDm2,121 3.1 augustusGene,24 30 chainDm2,538 netDm2,507 32 est,729 intronEst,78 intronEst,804 mrna,441 4 est,749 geneMapper,99 geneid,173 geneid,193 intronEst,824 mrna,461 xenoRefGene,306 4.3 geneid,175 403-410 blastDm2FB,190 418-20 rmsk,323 5 augustusGene,312 blastDm2FB,187 est,439 est,480 est,506 intronEst,514 intronEst,555 intronEst,581 500 est,35 intronEst,46 511-5 geneid,194 573-80 microsat,133 simpleRepeat,93 60 blastDm2FB,121 blastDm2FB,133 blastDm2FB,141 637-44 augustusGene,313 656-64 est,750 intronEst,825 mrna,462 xenoRefGene,307 7 geneMapper,98 750 est,629 intronEst,704 78-94 genscan,228 9 geneMapper,56 rmsk,322 9149143 genscan,230 96 est,677 intronEst,752 mrna,391 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainDm2,26 chainDm2,111 chainDm2,166 chainDm2,347 chainDm2,352 chainDm2,358 chainDm2,362 chainDm2,385 chainDm2,394 chainDm2,503 chainDm2,535 chainDm2,551 est,118 est,135 est,170 est,196 est,377 est,429 est,433 est,559 est,585 est,593 est,646 est,665 gap,30 gap,36 gap,47 gcPercent,28 geneMapper,18 geneMapper,27 geneMapper,73 geneid,52 geneid,63 geneid,114 genscan,102 genscan,132 gold,50 gold,108 gold,114 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,504 intronEst,508 intronEst,634 intronEst,660 intronEst,668 intronEst,721 intronEst,740 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,360 mrna,379 netDm2,141 netDm2,151 netDm2,155 netDm2,222 netDm2,239 netDm2,242 netDm2,292 netDm2,306 netDm2,312 netDm2,318 netDm2,322 netDm2,325 netDm2,353 netDm2,480 netDm2,504 netDm2,520 rmsk,36 rmsk,56 rmsk,196 rmsk,308 simpleRepeat,79 xenoRefGene,231 xenoRefGene,250 ab augustusGene,3 augustusGene,16 abbreviated chainDm2,311 about est,34 est,403 genscan,127 intronEst,45 intronEst,478 microsat,98 mrna,340 netDm2,147 netDm2,160 netDm2,342 simpleRepeat,59 xenoRefGene,180 above netDm2,219 netDm2,231 netDm2,251 abundance chainDm2,147 acad chainDm2,523 chainDm2,531 netDm2,500 acceptor genscan,32 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 acid blastDm2FB,75 acids blastDm2FB,147 est,724 intronEst,799 microsat,126 mrna,436 simpleRepeat,86 additional rmsk,254 advice chainDm2,423 chainDm2,455 netDm2,442 affine chainDm2,36 after netDm2,400 ag intronEst,85 against est,614 intronEst,37 intronEst,689 mrna,333 mrna,352 xenoRefGene,213 algorithm augustusGene,130 align est,644 intronEst,719 aligned blastDm2FB,58 blastDm2FB,83 chainDm2,314 est,613 est,649 intronEst,36 intronEst,149 intronEst,688 intronEst,724 mrna,351 mrna,363 xenoRefGene,212 xenoRefGene,234 aligning chainDm2,100 chainDm2,246 chainDm2,276 est,389 intronEst,464 alignment blastDm2FB,179 chainDm2,223 est,58 est,654 est,742 intronEst,136 intronEst,729 intronEst,817 mrna,39 mrna,368 mrna,454 netDm2,11 xenoRefGene,223 xenoRefGene,239 xenoRefGene,299 alignments augustusGene,300 blastDm2FB,21 chainDm2,12 chainDm2,24 chainDm2,325 chainDm2,328 chainDm2,345 chainDm2,373 chainDm2,490 chainDm2,563 est,16 est,663 intronEst,17 intronEst,738 mrna,17 mrna,377 netDm2,134 netDm2,258 netDm2,532 rmsk,265 xenoRefGene,248 all augustusGene,207 chainDm2,343 chainDm2,366 est,192 est,246 est,290 est,385 est,449 gold,126 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,524 mrna,138 mrna,192 mrna,236 rmsk,65 allowed est,625 intronEst,700 allows augustusGene,168 chainDm2,31 est,380 intronEst,455 mrna,326 xenoRefGene,149 alone augustusGene,33 along geneid,80 already netDm2,303 also blastDm2FB,149 chainDm2,42 est,262 est,370 est,562 gold,35 intronEst,337 intronEst,445 intronEst,637 mrna,208 mrna,316 alter est,129 intronEst,204 mrna,75 alternating gold,80 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 altschul blastDm2FB,167 alus rmsk,131 always gold,111 amino blastDm2FB,74 blastDm2FB,146 among gap,50 amount rmsk,185 amsterdam genscan,201 an blastDm2FB,103 chainDm2,119 chainDm2,146 chainDm2,152 est,411 est,458 est,541 gap,24 intronEst,61 intronEst,486 intronEst,533 intronEst,616 rmsk,311 xenoRefGene,143 xenoRefGene,222 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastDm2FB,13 blastDm2FB,28 blastDm2FB,137 chainDm2,49 chainDm2,64 chainDm2,195 chainDm2,201 chainDm2,213 chainDm2,226 chainDm2,308 chainDm2,334 chainDm2,351 chainDm2,360 chainDm2,419 chainDm2,434 chainDm2,459 chainDm2,465 chainDm2,476 chainDm2,513 chainDm2,518 est,10 est,26 est,48 est,88 est,132 est,282 est,418 est,432 est,440 est,568 est,674 gap,5 gcPercent,10 gcPercent,23 geneMapper,7 geneMapper,110 geneid,7 geneid,73 geneid,78 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,27 gold,44 gold,82 gold,96 gold,102 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,493 intronEst,507 intronEst,515 intronEst,643 intronEst,749 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,388 netDm2,41 netDm2,66 netDm2,123 netDm2,269 netDm2,347 netDm2,379 netDm2,390 netDm2,399 netDm2,409 netDm2,438 netDm2,453 netDm2,460 netDm2,471 netDm2,490 netDm2,495 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 simpleRepeat,9 simpleRepeat,42 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,191 xenoRefGene,259 xenoRefGene,286 annotated rmsk,67 annotation geneMapper,92 netDm2,53 rmsk,38 annotations geneMapper,23 geneMapper,35 geneMapper,120 genscan,120 anonymous geneid,58 any est,305 est,511 intronEst,380 intronEst,586 mrna,251 apply est,188 intronEst,263 mrna,134 appropriate xenoRefGene,112 apr blastDm2FB,6 chainDm2,6 chainDm2,77 est,747 geneid,191 genscan,224 intronEst,822 mrna,459 netDm2,6 netDm2,57 xenoRefGene,304 are augustusGene,27 chainDm2,107 chainDm2,162 chainDm2,178 chainDm2,189 chainDm2,235 chainDm2,401 est,30 est,67 est,149 est,159 est,684 gcPercent,38 geneid,76 geneid,90 geneid,96 genscan,25 genscan,160 gold,52 gold,74 gold,91 gold,131 intronEst,41 intronEst,224 intronEst,234 intronEst,759 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netDm2,77 netDm2,98 netDm2,105 netDm2,188 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 xenoRefGene,40 xenoRefGene,105 xenoRefGene,194 areas gcPercent,56 arian chainDm2,432 netDm2,451 rmsk,16 rmsk,287 arrays geneid,86 as augustusGene,77 augustusGene,79 blastDm2FB,37 est,558 gap,29 geneMapper,72 geneid,98 genscan,35 genscan,37 gold,37 intronEst,633 microsat,21 netDm2,150 netDm2,190 netDm2,213 netDm2,228 netDm2,296 netDm2,351 rmsk,53 rmsk,55 assembled geneid,131 geneid,140 gold,24 assemblies augustusGene,196 augustusGene,237 chainDm2,234 gap,51 assembly augustusGene,197 chainDm2,83 chainDm2,117 chainDm2,125 gap,25 gold,1 gold,2 gold,14 netDm2,63 associated est,110 gcPercent,53 intronEst,185 rmsk,194 simpleRepeat,51 at blastDm2FB,139 chainDm2,408 chainDm2,443 chainDm2,448 est,510 est,555 est,675 est,694 gcPercent,62 geneMapper,113 intronEst,67 intronEst,76 intronEst,101 intronEst,585 intronEst,630 intronEst,750 intronEst,769 microsat,28 microsat,77 mrna,389 mrna,406 netDm2,107 netDm2,291 netDm2,414 netDm2,427 xenoRefGene,93 xenoRefGene,260 xenoRefGene,276 attempt est,542 intronEst,617 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 axt chainDm2,332 axtchain chainDm2,340 chainDm2,341 chainDm2,439 axts chainDm2,337 back chainDm2,322 baertsch augustusGene,290 chainDm2,475 chainDm2,500 chainDm2,554 netDm2,470 netDm2,477 netDm2,523 barcelona geneid,46 base est,375 est,658 est,666 est,678 gcPercent,31 intronEst,450 intronEst,733 intronEst,741 intronEst,753 mrna,372 mrna,380 mrna,392 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,243 xenoRefGene,251 xenoRefGene,263 based augustusGene,28 chainDm2,237 chainDm2,263 geneMapper,91 genscan,26 gold,53 bases est,36 est,386 est,631 gcPercent,26 intronEst,47 intronEst,79 intronEst,461 intronEst,706 basic blastDm2FB,177 bdgp blastDm2FB,8 chainDm2,8 chainDm2,79 netDm2,8 netDm2,59 be augustusGene,99 chainDm2,59 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,490 est,598 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,565 intronEst,673 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 netDm2,117 rmsk,235 rmsk,257 simpleRepeat,44 xenoRefGene,88 bears est,94 intronEst,169 because est,590 intronEst,665 been chainDm2,297 geneMapper,37 intronEst,8 rmsk,70 before est,527 intronEst,602 netDm2,398 below chainDm2,393 genscan,154 genscan,168 rmsk,105 benson est,711 intronEst,786 microsat,102 microsat,112 microsat,114 mrna,423 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 berkeley geneMapper,116 best blastDm2FB,114 est,673 intronEst,748 mrna,387 netDm2,20 netDm2,200 xenoRefGene,258 better est,74 mrna,55 between chainDm2,346 est,17 est,85 gold,47 gold,88 gold,93 intronEst,18 intronEst,160 mrna,18 netDm2,345 biocomput chainDm2,493 bioinformatics augustusGene,307 augustusGene,332 geneid,169 biol blastDm2FB,184 geneMapper,96 genscan,222 biology geneid,27 geneid,146 genscan,200 birds augustusGene,203 black gap,15 blanco geneid,155 geneid,180 blast blastDm2FB,158 blastDm2FB,165 blast-like est,741 intronEst,816 mrna,453 xenoRefGene,298 blastz chainDm2,316 chainDm2,405 chainDm2,565 netDm2,257 netDm2,424 netDm2,534 blat blastDm2FB,66 blastDm2FB,191 est,618 est,627 est,739 intronEst,693 intronEst,702 intronEst,814 mrna,357 mrna,451 xenoRefGene,219 xenoRefGene,296 blocks chainDm2,370 chainDm2,380 gold,98 gold,125 both chainDm2,46 chainDm2,68 chainDm2,137 netDm2,388 xenoRefGene,126 xenoRefGene,188 boundaries blastDm2FB,71 gold,73 box chainDm2,287 est,208 est,219 est,259 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netDm2,142 xenoRefGene,207 boxes chainDm2,88 chainDm2,98 est,179 gap,16 intronEst,254 mrna,125 netDm2,131 branch-point augustusGene,55 brian blastDm2FB,211 bridge gold,123 brown gold,83 gold,97 browser chainDm2,463 est,226 est,339 est,356 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 netDm2,458 built augustusGene,51 augustusGene,67 geneid,91 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastDm2FB,108 est,447 est,504 est,557 intronEst,522 intronEst,579 intronEst,632 netDm2,233 rmsk,270 button chainDm2,258 by augustusGene,147 augustusGene,266 augustusGene,282 blastDm2FB,194 blastDm2FB,207 chainDm2,61 chainDm2,91 chainDm2,228 chainDm2,291 chainDm2,383 chainDm2,412 chainDm2,431 chainDm2,451 chainDm2,473 est,457 est,626 est,707 gap,14 geneMapper,39 geneid,21 genscan,20 genscan,88 genscan,121 gold,76 intronEst,87 intronEst,532 intronEst,701 intronEst,782 microsat,110 mrna,419 netDm2,101 netDm2,119 netDm2,305 netDm2,421 netDm2,431 netDm2,450 netDm2,468 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,186 xenoRefGene,283 xenoRefGene,288 c gcPercent,24 geneMapper,115 genscan,181 genscan,208 caenorhabditis augustusGene,212 california chainDm2,447 netDm2,418 can augustusGene,98 chainDm2,41 chainDm2,58 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 simpleRepeat,35 xenoRefGene,87 canonical intronEst,70 cap-selected est,520 intronEst,595 cap-selection est,529 intronEst,604 cases chainDm2,159 netDm2,88 catalunya geneid,47 categorized netDm2,189 cauldron chainDm2,510 netDm2,487 cause netDm2,171 caused chainDm2,60 cdna augustusGene,299 est,422 est,425 intronEst,497 intronEst,500 cells est,417 intronEst,492 centre geneid,37 cerevisiae augustusGene,222 certain rmsk,260 chain chainDm2,3 chainDm2,85 netDm2,25 netDm2,94 netDm2,149 netDm2,265 netDm2,308 netDm2,319 netDm2,327 netDm2,332 netDm2,355 netDm2,364 chained blastDm2FB,100 chainDm2,11 chainnet netDm2,282 netDm2,407 chains blastDm2FB,116 blastDm2FB,129 chainDm2,164 chainDm2,174 chainDm2,185 chainDm2,231 chainDm2,270 chainDm2,377 chainDm2,391 chainDm2,400 chainDm2,470 netDm2,76 netDm2,81 netDm2,103 netDm2,115 netDm2,122 netDm2,179 netDm2,253 netDm2,274 netDm2,289 netDm2,349 netDm2,380 change est,125 intronEst,200 mrna,71 chapter geneid,172 characteristic est,319 intronEst,394 mrna,265 chatterji geneMapper,86 geneMapper,109 check chainDm2,253 chiaromonte chainDm2,480 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 est,275 est,314 intronEst,350 intronEst,389 mrna,221 mrna,260 chosen est,337 intronEst,412 mrna,283 chr4 chainDm2,285 chris genscan,21 genscan,172 chromosome chainDm2,211 chainDm2,240 chainDm2,265 chainDm2,273 chainDm2,283 chainDm2,292 chainDm2,356 netDm2,212 netDm2,227 netDm2,243 chromosome-based chainDm2,233 circle rmsk,172 class rmsk,169 classes rmsk,121 click est,406 intronEst,481 mrna,343 netDm2,139 netDm2,153 xenoRefGene,110 xenoRefGene,175 xenoRefGene,205 cloned est,427 intronEst,502 closest augustusGene,241 coding geneid,118 simpleRepeat,38 xenoRefGene,203 codon genscan,100 genscan,122 mrna,321 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 codons geneid,75 genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 colin geneMapper,62 collection xenoRefGene,33 color chainDm2,261 est,131 est,316 genscan,86 genscan,96 intronEst,206 intronEst,391 mrna,77 mrna,262 rmsk,177 xenoRefGene,58 xenoRefGene,169 coloration gold,84 colored chainDm2,236 coloring chainDm2,252 genscan,116 mrna,322 xenoRefGene,139 xenoRefGene,146 colors xenoRefGene,81 xenoRefGene,161 combination est,278 intronEst,353 mrna,224 combined rmsk,202 comparative chainDm2,13 netDm2,13 compare mrna,331 xenoRefGene,155 comparison genscan,109 complete genscan,213 completely xenoRefGene,137 complex chainDm2,130 complexity rmsk,30 rmsk,153 components gold,127 compositional genscan,41 computational geneid,26 geneid,145 genscan,196 conditional augustusGene,118 configuration chainDm2,227 est,49 genscan,64 genscan,84 intronEst,127 mrna,30 netDm2,67 rmsk,109 xenoRefGene,46 configured est,372 intronEst,447 mrna,318 xenoRefGene,89 considerable est,601 intronEst,676 considered intronEst,59 constitute gap,46 consult est,220 intronEst,295 mrna,166 contained netDm2,381 contains blastDm2FB,19 est,245 gap,35 intronEst,320 mrna,191 xenoRefGene,142 contamination est,589 intronEst,93 intronEst,664 content augustusGene,71 gcPercent,37 gcPercent,47 gcPercent,50 contig gold,72 gold,141 contigs gold,26 gold,30 gold,48 gold,65 gold,89 gold,106 controls xenoRefGene,92 conventions chainDm2,225 est,47 est,55 genscan,62 genscan,70 intronEst,125 intronEst,133 mrna,28 mrna,36 netDm2,65 rmsk,107 xenoRefGene,44 xenoRefGene,52 converted chainDm2,330 copies microsat,80 corresponds est,228 intronEst,303 mrna,174 cover est,522 intronEst,597 covered netDm2,304 created microsat,89 rmsk,13 credits augustusGene,247 blastDm2FB,151 chainDm2,404 est,689 gcPercent,57 geneMapper,105 geneid,142 genscan,169 intronEst,764 microsat,104 mrna,400 netDm2,405 rmsk,284 simpleRepeat,66 xenoRefGene,271 crg geneid,44 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 cruz chainDm2,450 netDm2,420 culex augustusGene,220 curated xenoRefGene,287 curr geneid,167 current est,163 intronEst,238 mrna,109 rmsk,216 currently-viewed gold,70 cytosine gcPercent,25 d augustusGene,293 blastDm2FB,1 blastDm2FB,4 blastDm2FB,34 blastDm2FB,44 blastDm2FB,53 blastDm2FB,61 blastDm2FB,86 blastDm2FB,96 chainDm2,1 chainDm2,4 chainDm2,19 chainDm2,21 chainDm2,47 chainDm2,50 chainDm2,71 chainDm2,115 chainDm2,123 chainDm2,171 chainDm2,301 chainDm2,303 chainDm2,349 chainDm2,354 chainDm2,507 chainDm2,559 est,1 est,4 est,18 est,607 gap,20 geneMapper,41 geneMapper,47 geneMapper,77 genscan,192 gold,17 intronEst,3 intronEst,19 intronEst,120 intronEst,682 mrna,1 mrna,4 mrna,19 mrna,347 netDm2,1 netDm2,4 netDm2,21 netDm2,23 netDm2,31 netDm2,47 netDm2,484 netDm2,528 xenoRefGene,24 xenoRefGene,215 d23-6 est,732 intronEst,807 mrna,444 da est,712 intronEst,787 mrna,424 dark xenoRefGene,75 darker intronEst,142 darkly est,69 gcPercent,41 mrna,50 data est,699 geneid,153 intronEst,774 microsat,47 mrna,411 rmsk,229 rmsk,246 xenoRefGene,36 xenoRefGene,281 database chainDm2,466 est,730 intronEst,805 mrna,442 netDm2,461 rmsk,309 databases est,576 est,706 intronEst,97 intronEst,651 intronEst,781 mrna,418 david chainDm2,460 de augustusGene,303 geneid,38 default chainDm2,229 xenoRefGene,103 xenoRefGene,187 defining geneid,106 degraded est,491 intronEst,566 degree est,586 intronEst,661 deletion chainDm2,112 chainDm2,512 netDm2,489 rmsk,190 deletions chainDm2,66 chainDm2,145 dense est,61 gold,59 intronEst,139 mrna,42 dependencies genscan,183 depicts gap,10 gold,63 deposited est,563 intronEst,638 derived netDm2,255 described genscan,161 netDm2,262 rmsk,96 describes augustusGene,226 description augustusGene,12 blastDm2FB,16 chainDm2,15 est,12 est,112 gap,7 gcPercent,12 geneMapper,10 geneid,10 genscan,10 genscan,77 genscan,133 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 netDm2,15 netDm2,267 rmsk,9 simpleRepeat,11 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designated gap,28 designed geneid,61 desired est,277 intronEst,352 mrna,223 detail genscan,164 detailed augustusGene,90 netDm2,145 netDm2,164 rmsk,37 determining netDm2,169 developed chainDm2,407 chainDm2,442 geneid,20 netDm2,413 netDm2,426 dewey geneMapper,63 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 differ est,395 intronEst,470 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 genscan,54 netDm2,244 rmsk,120 direction est,81 est,99 intronEst,156 intronEst,174 discarded chainDm2,397 xenoRefGene,229 discover blastDm2FB,69 diseases simpleRepeat,54 display chainDm2,203 chainDm2,224 chainDm2,267 chainDm2,464 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 genscan,61 genscan,69 genscan,104 gold,121 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 netDm2,64 netDm2,70 netDm2,129 netDm2,158 netDm2,187 netDm2,459 rmsk,106 rmsk,112 rmsk,182 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainDm2,402 est,685 intronEst,760 netDm2,106 netDm2,203 xenoRefGene,195 displays chainDm2,87 microsat,13 rmsk,116 simpleRepeat,14 dissertation augustusGene,105 distant est,546 intronEst,621 distinguished gold,75 distributions augustusGene,83 genscan,42 diverged netDm2,404 dj blastDm2FB,176 est,716 intronEst,791 mrna,428 dl est,720 intronEst,795 mrna,432 dm2 blastDm2FB,10 chainDm2,10 chainDm2,81 chainDm2,82 netDm2,10 netDm2,61 netDm2,62 dna geneid,119 genscan,219 microsat,123 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 done augustusGene,265 augustusGene,281 donor genscan,31 double chainDm2,95 chainDm2,126 double-lined chainDm2,187 double-sided chainDm2,55 downloads rmsk,76 draft gold,13 drastically intronEst,99 drawn gcPercent,39 gold,117 drosophila augustusGene,213 geneid,187 due chainDm2,109 chainDm2,180 chainDm2,192 duplication chainDm2,511 netDm2,488 during netDm2,309 dynamic chainDm2,386 e geneid,156 geneid,181 e.g chainDm2,284 each blastDm2FB,80 chainDm2,221 est,217 genscan,99 intronEst,292 mrna,163 editors genscan,195 effect est,561 intronEst,636 either chainDm2,92 electronic rmsk,312 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 eliminate est,634 intronEst,709 eliminating intronEst,105 elsevier genscan,202 emerged est,531 intronEst,606 netDm2,315 end est,481 est,499 est,509 est,550 intronEst,556 intronEst,574 intronEst,584 intronEst,625 ends intronEst,86 enter chainDm2,278 entered est,254 intronEst,329 mrna,200 especially est,155 intronEst,230 mrna,101 est est,11 est,87 est,183 est,412 est,575 est,596 est,648 est,697 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,487 intronEst,650 intronEst,671 intronEst,723 intronEst,772 mrna,11 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,451 est,496 est,507 est,609 est,636 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,526 intronEst,571 intronEst,582 intronEst,684 intronEst,711 even est,570 est,577 intronEst,645 intronEst,652 every netDm2,27 evidence gold,57 intronEst,65 evolution chainDm2,508 netDm2,485 ew blastDm2FB,174 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 exist gold,87 netDm2,90 exon augustusGene,86 blastDm2FB,70 blastDm2FB,81 blastDm2FB,115 blastDm2FB,128 exons blastDm2FB,98 geneid,89 geneid,95 geneid,126 geneid,141 genscan,44 expansions simpleRepeat,48 expense intronEst,103 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 extend rmsk,267 extended blastDm2FB,131 extending blastDm2FB,117 f chainDm2,481 facilitate genscan,106 factor est,231 intronEst,306 mrna,177 faq augustusGene,45 genscan,60 rmsk,280 feature chainDm2,207 est,378 genscan,129 intronEst,453 mrna,324 xenoRefGene,147 xenoRefGene,182 features xenoRefGene,83 fed chainDm2,338 field augustusGene,120 fill netDm2,339 netDm2,372 filled netDm2,99 netDm2,118 netDm2,321 netDm2,394 filter chainDm2,290 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 genscan,82 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 filtered est,330 intronEst,405 mrna,276 filtering est,269 intronEst,344 mrna,215 finally blastDm2FB,93 geneid,120 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netDm2,38 first blastDm2FB,48 geneid,68 netDm2,279 fish augustusGene,201 fit netDm2,299 flag rmsk,253 flags rmsk,255 fly augustusGene,214 flybase blastDm2FB,36 blastDm2FB,55 following genscan,81 follows est,52 genscan,67 intronEst,130 mrna,33 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastDm2FB,161 chainDm2,220 est,56 est,114 est,185 est,216 est,238 est,400 est,444 geneMapper,20 geneMapper,117 geneid,117 geneid,150 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,519 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 netDm2,26 netDm2,37 netDm2,42 netDm2,176 rmsk,25 rmsk,259 rmsk,281 rmsk,291 simpleRepeat,30 simpleRepeat,56 xenoRefGene,20 xenoRefGene,53 xenoRefGene,177 format chainDm2,333 forth netDm2,125 found augustusGene,100 chainDm2,382 mrna,375 four netDm2,193 fragment gold,133 fragments est,42 gold,4 intronEst,53 from augustusGene,19 blastDm2FB,25 blastDm2FB,51 chainDm2,75 chainDm2,142 chainDm2,424 chainDm2,456 est,396 est,416 est,437 est,547 est,565 est,610 est,696 geneMapper,4 geneMapper,26 geneid,16 geneid,92 geneid,121 genscan,15 gold,3 intronEst,471 intronEst,491 intronEst,512 intronEst,622 intronEst,640 intronEst,685 intronEst,771 mrna,7 mrna,408 netDm2,55 netDm2,245 netDm2,256 netDm2,443 rmsk,86 xenoRefGene,27 xenoRefGene,167 xenoRefGene,278 fruitfly geneMapper,57 full chainDm2,202 netDm2,69 rmsk,111 furthermore augustusGene,64 g gcPercent,21 geneid,158 geneid,179 microsat,115 simpleRepeat,75 gambiae augustusGene,219 gap blastDm2FB,106 blastDm2FB,110 chainDm2,27 chainDm2,37 chainDm2,154 gap,1 gap,2 gap,31 gap,48 gold,45 netDm2,162 netDm2,174 netDm2,197 netDm2,215 netDm2,230 netDm2,247 netDm2,323 gapless chainDm2,368 gaps chainDm2,33 chainDm2,44 chainDm2,57 chainDm2,105 chainDm2,131 chainDm2,177 chainDm2,188 gap,11 gold,86 netDm2,89 netDm2,111 netDm2,138 netDm2,378 netDm2,384 gary microsat,111 simpleRepeat,71 gc gcPercent,1 gcPercent,4 gcPercent,14 gcPercent,36 gcPercent,46 gcPercent,49 gen geneid,41 genbank est,25 est,611 est,721 intronEst,26 intronEst,686 intronEst,796 mrna,8 mrna,23 mrna,346 mrna,433 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastDm2FB,14 geneMapper,8 geneMapper,14 geneMapper,22 geneid,4 geneid,8 geneid,14 geneid,128 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 gene-rich gcPercent,55 geneid geneid,1 geneid,3 geneid,18 geneid,50 geneid,163 geneid,185 genemapper geneMapper,1 geneMapper,2 geneMapper,17 geneMapper,94 general est,493 intronEst,568 generally rmsk,72 generate est,604 intronEst,679 rmsk,227 rmsk,300 generated chainDm2,472 gcPercent,61 rmsk,248 xenoRefGene,282 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastDm2FB,12 blastDm2FB,30 est,45 geneMapper,6 geneMapper,44 geneMapper,80 geneid,2 geneid,6 geneid,56 geneid,166 genscan,2 genscan,6 genscan,59 intronEst,56 simpleRepeat,41 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,185 xenoRefGene,193 xenoRefGene,204 genet rmsk,318 genetic rmsk,88 genome augustusGene,31 blastDm2FB,63 chainDm2,173 chainDm2,566 est,28 est,616 est,744 gap,22 geneMapper,29 geneMapper,49 geneMapper,52 geneMapper,95 geneid,188 gold,19 gold,139 intronEst,29 intronEst,39 intronEst,691 intronEst,819 mrna,26 mrna,354 mrna,456 netDm2,33 netDm2,44 netDm2,277 netDm2,535 xenoRefGene,217 xenoRefGene,301 genomes chainDm2,312 chainDm2,520 geneMapper,33 geneMapper,58 geneMapper,84 netDm2,497 genomic chainDm2,23 chainDm2,488 est,91 est,398 est,571 est,682 geneid,59 genscan,92 genscan,218 intronEst,166 intronEst,473 intronEst,646 intronEst,757 mrna,335 mrna,396 netDm2,181 xenoRefGene,164 xenoRefGene,267 genomics chainDm2,14 netDm2,14 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,107 giri rmsk,92 rmsk,290 gish blastDm2FB,169 go genscan,113 gold gold,81 gold,95 graphical gold,120 netDm2,128 rmsk,181 group augustusGene,198 augustusGene,235 chainDm2,359 geneid,31 grouped gold,32 groups augustusGene,194 gt intronEst,84 guanine gcPercent,22 guide geneMapper,74 guig geneid,23 geneid,159 geneid,182 hardison chainDm2,426 chainDm2,556 netDm2,445 netDm2,525 has est,117 intronEst,83 intronEst,192 mrna,63 rmsk,212 xenoRefGene,68 haussler augustusGene,292 chainDm2,461 chainDm2,506 chainDm2,558 netDm2,483 netDm2,527 have chainDm2,296 geneMapper,36 intronEst,7 rmsk,69 having est,655 est,664 intronEst,730 intronEst,739 mrna,369 mrna,378 xenoRefGene,240 xenoRefGene,249 helpful est,145 intronEst,220 mrna,91 here chainDm2,403 est,407 intronEst,482 mrna,344 xenoRefGene,176 hidden augustusGene,324 hide xenoRefGene,183 hierarchical geneid,64 hierarchy netDm2,314 high gcPercent,35 gcPercent,48 higher netDm2,346 rmsk,200 higher-level netDm2,363 higher-scoring netDm2,307 netDm2,326 highest est,657 intronEst,732 mrna,371 xenoRefGene,242 highest-scoring netDm2,80 netDm2,273 highlight est,325 intronEst,400 mrna,271 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 highly microsat,40 hinrichs chainDm2,502 netDm2,479 his chainDm2,435 netDm2,454 homology geneMapper,53 geneMapper,68 honeybee1 augustusGene,217 hou chainDm2,414 netDm2,433 how netDm2,374 netDm2,391 human augustusGene,205 augustusGene,210 augustusGene,276 chainDm2,519 genscan,217 netDm2,496 human-mouse chainDm2,562 netDm2,531 hybridizes est,461 intronEst,536 i est,714 intronEst,789 mrna,426 i.e intronEst,72 identified blastDm2FB,31 chainDm2,430 est,661 intronEst,736 netDm2,449 xenoRefGene,246 identify geneid,165 identity est,659 est,667 est,679 intronEst,734 intronEst,742 intronEst,754 microsat,71 mrna,373 mrna,381 mrna,393 xenoRefGene,244 xenoRefGene,252 xenoRefGene,264 if est,268 est,280 est,296 est,332 est,349 gap,32 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 xenoRefGene,196 ii215-25 augustusGene,338 imperfect simpleRepeat,19 improve augustusGene,302 in augustusGene,101 blastDm2FB,32 chainDm2,45 chainDm2,67 chainDm2,113 chainDm2,121 chainDm2,136 chainDm2,155 chainDm2,158 chainDm2,198 chainDm2,215 chainDm2,244 chainDm2,274 chainDm2,286 chainDm2,515 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,492 est,540 est,650 est,686 gap,18 gcPercent,5 gcPercent,27 geneid,45 geneid,57 geneid,66 geneid,186 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,58 gold,118 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,567 intronEst,615 intronEst,725 intronEst,761 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,364 netDm2,51 netDm2,68 netDm2,86 netDm2,91 netDm2,100 netDm2,112 netDm2,126 netDm2,168 netDm2,185 netDm2,216 netDm2,234 netDm2,248 netDm2,275 netDm2,316 netDm2,324 netDm2,340 netDm2,373 netDm2,385 netDm2,492 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 xenoRefGene,235 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 blastDm2FB,127 blastDm2FB,150 includes rmsk,168 including est,7 geneMapper,24 intronEst,116 rmsk,159 indels microsat,74 indicate chainDm2,104 chainDm2,209 est,71 mrna,52 indicates est,79 intronEst,144 intronEst,154 xenoRefGene,60 individual chainDm2,206 netDm2,183 information augustusGene,36 blastDm2FB,163 est,78 est,402 genscan,51 genscan,126 intronEst,153 intronEst,477 microsat,97 mrna,339 netDm2,146 netDm2,159 netDm2,165 netDm2,341 rmsk,89 rmsk,283 simpleRepeat,58 xenoRefGene,179 initiate rmsk,275 initio augustusGene,4 augustusGene,17 inserted chainDm2,298 netDm2,397 insertion chainDm2,120 rmsk,193 instead xenoRefGene,120 institute rmsk,91 intergenic genscan,47 international est,703 intronEst,778 mrna,415 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainDm2,323 chainDm2,331 chainDm2,339 chainDm2,357 est,255 est,421 est,428 est,573 gold,25 gold,33 intronEst,330 intronEst,496 intronEst,503 intronEst,648 mrna,201 netDm2,300 intron augustusGene,88 augustusGene,330 est,623 intronEst,71 intronEst,698 introns est,640 genscan,45 intronEst,715 inv netDm2,221 inversions chainDm2,63 chainDm2,143 inverted netDm2,359 involve chainDm2,133 is blastDm2FB,153 chainDm2,74 est,284 est,300 est,336 est,353 est,414 est,426 est,435 est,455 est,584 est,628 gap,27 gcPercent,51 geneid,33 geneid,51 geneid,130 gold,110 gold,116 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,489 intronEst,501 intronEst,510 intronEst,530 intronEst,659 intronEst,703 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 netDm2,35 netDm2,54 netDm2,166 rmsk,95 simpleRepeat,28 isolated est,415 intronEst,490 issue est,731 intronEst,806 mrna,443 it chainDm2,40 est,93 est,107 est,477 genscan,143 intronEst,168 intronEst,182 intronEst,552 netDm2,34 netDm2,220 netDm2,232 item xenoRefGene,77 items est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,277 netDm2,184 xenoRefGene,104 j blastDm2FB,182 est,718 genscan,220 intronEst,793 mrna,430 rmsk,99 rmsk,305 jan chainDm2,569 est,727 intronEst,802 microsat,129 mrna,439 netDm2,538 simpleRepeat,89 jim blastDm2FB,195 blastDm2FB,208 chainDm2,452 chainDm2,477 netDm2,422 netDm2,472 joined chainDm2,89 journal rmsk,313 jun geneid,171 june blastDm2FB,40 jurka rmsk,98 rmsk,304 k augustusGene,268 karlin genscan,148 genscan,209 karsch-mizrachi est,713 intronEst,788 mrna,425 kasif genscan,193 kd-tree chainDm2,363 chainDm2,390 kent blastDm2FB,196 blastDm2FB,209 chainDm2,453 chainDm2,478 chainDm2,498 chainDm2,548 est,737 intronEst,812 mrna,449 netDm2,423 netDm2,473 netDm2,475 netDm2,517 xenoRefGene,294 kept mrna,399 xenoRefGene,270 known blastDm2FB,29 gold,36 gold,112 xenoRefGene,15 l geneMapper,89 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled xenoRefGene,106 labeling est,376 intronEst,451 labels xenoRefGene,78 largely chainDm2,108 larger intronEst,146 largest netDm2,79 least blastDm2FB,140 est,676 intronEst,68 intronEst,77 intronEst,751 microsat,29 microsat,78 mrna,390 xenoRefGene,261 length augustusGene,82 est,38 est,624 genscan,39 intronEst,49 intronEst,81 intronEst,699 less xenoRefGene,225 level est,668 intronEst,91 intronEst,743 mrna,382 netDm2,74 netDm2,108 netDm2,113 netDm2,120 netDm2,178 netDm2,205 netDm2,218 netDm2,250 rmsk,175 xenoRefGene,62 xenoRefGene,253 libraries est,521 intronEst,596 rmsk,224 rmsk,297 library rmsk,83 light xenoRefGene,71 lighter rmsk,207 likely augustusGene,111 microsat,17 line gold,115 netDm2,156 rmsk,136 line-up netDm2,223 line-ups netDm2,208 lineage-specific chainDm2,427 netDm2,446 lines chainDm2,96 chainDm2,103 chainDm2,127 netDm2,136 lior geneMapper,111 lipman blastDm2FB,175 est,715 intronEst,790 mrna,427 list est,212 intronEst,287 mrna,158 local blastDm2FB,178 chainDm2,62 chainDm2,149 located simpleRepeat,21 location chainDm2,214 locations gap,3 log-likelihood geneid,111 logic est,279 intronEst,354 mrna,225 long est,639 intronEst,714 rmsk,132 rmsk,137 longer chainDm2,32 longest netDm2,201 low gcPercent,45 rmsk,29 rmsk,152 lower netDm2,177 lower-level netDm2,348 netDm2,354 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 made netDm2,467 make blastDm2FB,78 est,410 est,476 gold,67 intronEst,485 intronEst,551 makes chainDm2,361 many est,147 intronEst,106 intronEst,222 mrna,93 netDm2,87 map chainDm2,242 geneMapper,69 mapped augustusGene,298 mapping gap,4 gcPercent,9 gold,5 maps geneMapper,54 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark est,497 intronEst,572 markers microsat,23 markov augustusGene,325 geneid,115 masked rmsk,71 match chainDm2,219 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 netDm2,202 netDm2,240 matched blastDm2FB,138 matches est,72 mrna,53 matching chainDm2,222 est,90 intronEst,165 mature est,467 intronEst,542 maximally chainDm2,375 maximizing geneid,132 maximum blastDm2FB,105 est,622 intronEst,697 maxtracks augustusGene,139 may chainDm2,140 est,143 est,261 est,369 est,472 est,474 est,486 est,488 est,508 est,633 intronEst,218 intronEst,336 intronEst,444 intronEst,547 intronEst,549 intronEst,561 intronEst,563 intronEst,583 intronEst,708 mrna,89 mrna,207 mrna,315 netDm2,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 mdash est,446 est,450 gap,12 gap,17 intronEst,521 intronEst,525 medium xenoRefGene,73 mel blastDm2FB,2 chainDm2,2 netDm2,2 melanogaster blastDm2FB,5 blastDm2FB,35 blastDm2FB,54 blastDm2FB,62 chainDm2,5 chainDm2,20 chainDm2,48 chainDm2,72 chainDm2,116 chainDm2,302 chainDm2,350 geneMapper,42 geneMapper,78 netDm2,5 netDm2,22 netDm2,48 mellifera augustusGene,216 menu xenoRefGene,174 mercator geneMapper,65 methods augustusGene,46 blastDm2FB,47 chainDm2,293 est,408 geneMapper,50 geneid,49 genscan,130 genscan,197 intronEst,483 microsat,45 mrna,345 netDm2,252 netDm2,261 rmsk,210 simpleRepeat,55 xenoRefGene,208 mica geneid,43 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,642 intronEst,183 intronEst,717 miller blastDm2FB,171 chainDm2,421 chainDm2,458 chainDm2,484 chainDm2,504 chainDm2,560 netDm2,440 netDm2,481 netDm2,529 minexonintronprob augustusGene,135 minimum gap,41 minmeanexonintronprob augustusGene,137 minmei chainDm2,413 netDm2,432 mismatch rmsk,188 mode est,63 est,128 gold,60 intronEst,141 intronEst,203 mrna,44 mrna,74 netDm2,71 rmsk,113 model augustusGene,121 augustusGene,326 geneid,116 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modes chainDm2,204 modified rmsk,57 mol blastDm2FB,183 genscan,221 molecular genscan,199 more augustusGene,35 blastDm2FB,119 blastDm2FB,162 chainDm2,129 chainDm2,190 est,68 est,175 est,271 est,401 gcPercent,40 genscan,50 genscan,125 genscan,163 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 rmsk,282 simpleRepeat,57 xenoRefGene,178 most augustusGene,93 augustusGene,110 est,445 intronEst,520 rmsk,215 mouse chainDm2,517 netDm2,494 mrna est,9 est,468 est,484 est,567 intronEst,10 intronEst,543 intronEst,559 intronEst,642 mrna,9 mrna,14 mrna,129 mrna,362 mrna,402 mrna,409 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,349 much netDm2,375 netDm2,392 multiple chainDm2,163 est,651 intronEst,726 mrna,365 xenoRefGene,236 must intronEst,63 mutation chainDm2,150 myers blastDm2FB,173 name chainDm2,280 est,201 intronEst,276 mrna,147 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainDm2,208 xenoRefGene,131 native augustusGene,295 natl chainDm2,522 chainDm2,530 netDm2,499 natural netDm2,313 ncbi blastDm2FB,157 xenoRefGene,29 xenoRefGene,290 necessary netDm2,297 nematodes augustusGene,211 net netDm2,3 netDm2,12 netclass netDm2,367 netDm2,410 nets netDm2,465 netsyntenic netDm2,335 netDm2,408 new augustusGene,329 newer est,519 intronEst,594 rmsk,236 newly geneMapper,31 next blastDm2FB,72 chainDm2,259 chainDm2,288 chainDm2,374 geneid,88 nig augustusGene,270 no blastDm2FB,109 est,95 intronEst,170 microsat,73 non-coding augustusGene,75 xenoRefGene,184 non-d xenoRefGene,3 non-mrna est,588 intronEst,663 non-protein-coding xenoRefGene,18 xenoRefGene,192 nonsyn netDm2,238 not est,341 est,448 est,475 est,489 intronEst,416 intronEst,523 intronEst,550 intronEst,564 mrna,287 netDm2,302 rmsk,272 note est,619 intronEst,694 rmsk,230 novo augustusGene,304 ns gap,39 gap,44 netDm2,382 nuclear rmsk,126 rmsk,134 nucleic est,723 intronEst,798 microsat,125 mrna,435 simpleRepeat,85 number augustusGene,153 gap,42 intronEst,147 rmsk,203 oacute geneid,24 geneid,40 obtained augustusGene,126 geneMapper,38 geneMapper,60 occur simpleRepeat,36 oct augustusGene,334 blastDm2FB,186 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastDm2FB,22 blastDm2FB,38 blastDm2FB,122 blastDm2FB,134 blastDm2FB,142 blastDm2FB,155 chainDm2,148 chainDm2,169 chainDm2,217 chainDm2,271 chainDm2,281 chainDm2,365 chainDm2,371 chainDm2,378 chainDm2,446 chainDm2,468 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,466 est,482 est,500 est,517 est,579 est,587 est,591 est,671 gap,38 gap,43 gcPercent,20 geneMapper,16 geneMapper,55 geneid,28 geneid,35 geneid,101 geneid,104 geneid,113 geneid,124 geneid,135 geneid,138 geneid,147 genscan,43 genscan,110 genscan,134 genscan,212 gold,15 gold,79 gold,104 gold,132 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,541 intronEst,557 intronEst,575 intronEst,592 intronEst,654 intronEst,662 intronEst,666 intronEst,746 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,385 netDm2,29 netDm2,172 netDm2,192 netDm2,376 netDm2,417 netDm2,463 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 simpleRepeat,40 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,224 xenoRefGene,256 off chainDm2,250 chainDm2,256 xenoRefGene,134 offers genscan,79 often chainDm2,179 chainDm2,191 ograve geneid,42 oligo-dt est,459 intronEst,534 on augustusGene,29 augustusGene,37 augustusGene,151 blastDm2FB,164 chainDm2,238 chainDm2,264 est,232 est,270 genscan,27 genscan,52 gold,54 intronEst,307 intronEst,345 mrna,178 mrna,216 netDm2,140 netDm2,154 netDm2,204 netDm2,209 netDm2,224 netDm2,263 rmsk,74 rmsk,243 one augustusGene,169 chainDm2,156 chainDm2,272 est,173 est,273 est,306 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 netDm2,191 netDm2,290 netDm2,386 only chainDm2,268 est,157 est,286 est,359 est,392 est,662 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,737 microsat,61 mrna,103 mrna,232 mrna,305 mrna,376 xenoRefGene,201 xenoRefGene,247 opposite netDm2,236 option augustusGene,167 augustusGene,187 est,405 genscan,94 intronEst,480 mrna,342 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options genscan,85 or blastDm2FB,210 chainDm2,94 chainDm2,118 chainDm2,151 est,174 est,298 est,317 est,326 est,391 est,441 est,473 est,487 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,516 intronEst,548 intronEst,562 mrna,120 mrna,244 mrna,263 mrna,272 netDm2,175 netDm2,358 netDm2,387 xenoRefGene,132 order gold,42 gold,101 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 organism chainDm2,247 chainDm2,277 organism-specific blastDm2FB,104 organisms netDm2,403 rmsk,261 xenoRefGene,21 organizes chainDm2,342 orientation gold,43 gold,103 netDm2,237 orthologous netDm2,39 ostell est,717 intronEst,792 mrna,429 other augustusGene,208 geneMapper,83 netDm2,102 netDm2,195 rmsk,165 xenoRefGene,1 xenoRefGene,22 otherwise est,643 intronEst,718 ouml augustusGene,269 our augustusGene,43 genscan,58 out chainDm2,364 outputs rmsk,35 outside est,578 intronEst,653 over blastDm2FB,118 blastDm2FB,132 chainDm2,165 chainDm2,388 overlapping chainDm2,65 chainDm2,144 p genscan,205 pac chainDm2,491 pachter geneMapper,88 geneMapper,112 pack chainDm2,200 page est,113 genscan,78 genscan,123 intronEst,188 mrna,59 rmsk,77 xenoRefGene,100 pages netDm2,268 paired-end gold,55 pairwise chainDm2,487 paralogs chainDm2,194 parra geneid,157 geneid,178 part blastDm2FB,154 geneid,34 netDm2,28 particular augustusGene,234 chainDm2,167 patterns augustusGene,56 penalty blastDm2FB,111 pennsylvania chainDm2,409 netDm2,428 peptides blastDm2FB,24 percent gcPercent,2 gcPercent,15 percentage gcPercent,3 gcPercent,19 perfect microsat,31 perhaps est,569 intronEst,644 period microsat,65 permitted rmsk,273 place netDm2,287 placed netDm2,329 places est,652 intronEst,727 mrna,366 xenoRefGene,237 plasmid est,430 intronEst,505 plus geneid,108 pmc chainDm2,544 chainDm2,575 est,735 est,753 geneMapper,103 geneid,197 intronEst,810 intronEst,828 microsat,136 mrna,447 mrna,465 netDm2,513 netDm2,544 simpleRepeat,96 xenoRefGene,310 pmc148217 microsat,137 simpleRepeat,97 pmc1557983 geneMapper,104 pmc187518 est,754 intronEst,829 mrna,466 xenoRefGene,311 pmc208784 chainDm2,545 netDm2,514 pmc308779 est,736 intronEst,811 mrna,448 pmc310871 geneid,198 pmc430961 chainDm2,576 netDm2,545 pmid augustusGene,314 augustusGene,339 chainDm2,496 chainDm2,542 chainDm2,573 est,733 est,751 geneMapper,101 geneid,176 geneid,195 genscan,229 intronEst,808 intronEst,826 microsat,134 mrna,445 mrna,463 netDm2,511 netDm2,542 rmsk,324 simpleRepeat,94 xenoRefGene,308 point est,512 intronEst,587 poly-a augustusGene,62 est,464 est,538 intronEst,539 intronEst,613 polymorphic microsat,41 simpleRepeat,46 population microsat,44 portion chainDm2,168 position geneid,84 possible gold,29 netDm2,96 possibly simpleRepeat,18 pre-mrna genscan,185 predict geneid,55 predicted blastDm2FB,27 blastDm2FB,49 geneid,77 geneid,125 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastDm2FB,15 geneMapper,3 geneMapper,9 geneMapper,15 geneid,5 geneid,9 geneid,15 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 xenoRefGene,10 xenoRefGene,157 present rmsk,44 primed est,456 intronEst,531 primer est,443 intronEst,518 priming est,539 intronEst,614 proc chainDm2,521 netDm2,498 process netDm2,311 processed chainDm2,182 processing geneid,30 geneid,149 produce blastDm2FB,202 produced est,693 intronEst,768 mrna,405 xenoRefGene,275 program augustusGene,21 augustusGene,257 blastDm2FB,67 blastDm2FB,92 chainDm2,387 chainDm2,436 chainDm2,440 geneMapper,19 geneMapper,66 geneid,19 geneid,53 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,358 netDm2,281 netDm2,334 netDm2,366 netDm2,455 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 programs netDm2,411 project xenoRefGene,292 projects est,533 est,552 est,582 intronEst,608 intronEst,627 intronEst,657 protein blastDm2FB,125 blastDm2FB,144 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,190 proteins blastDm2FB,3 blastDm2FB,11 blastDm2FB,50 protoc geneid,168 providing augustusGene,254 geneMapper,118 geneid,151 genscan,175 rmsk,292 provisional xenoRefGene,72 pseudogenes chainDm2,183 chainDm2,197 psl est,57 intronEst,135 mrna,38 public est,704 intronEst,779 mrna,416 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 put chainDm2,321 putative blastDm2FB,95 pwas geneid,87 quality est,75 mrna,56 query blastDm2FB,124 blastDm2FB,136 rmsk,47 rmsk,61 quickly mrna,330 xenoRefGene,152 quite simpleRepeat,45 quot chainDm2,54 chainDm2,56 chainDm2,255 chainDm2,257 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 gold,38 gold,40 gold,135 gold,137 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 r augustusGene,291 chainDm2,501 chainDm2,555 chainDm2,557 geneid,161 geneid,184 netDm2,478 netDm2,524 r29 geneMapper,100 r4 blastDm2FB,9 chainDm2,9 chainDm2,80 netDm2,9 netDm2,60 random augustusGene,119 est,535 intronEst,610 random-primed est,581 intronEst,656 raney blastDm2FB,212 ranked netDm2,278 rather est,536 intronEst,611 ratio geneid,112 rc netDm2,526 rmsk,170 read est,434 gold,56 intronEst,509 reads gold,22 rearrangement chainDm2,514 netDm2,45 netDm2,182 netDm2,491 reasonably est,502 est,525 intronEst,577 intronEst,600 record xenoRefGene,67 reduced intronEst,100 refer genscan,144 reference geneMapper,28 geneMapper,90 xenoRefGene,31 references augustusGene,285 chainDm2,479 est,710 geneMapper,85 geneid,154 genscan,152 genscan,179 intronEst,785 microsat,113 mrna,422 netDm2,474 rmsk,103 rmsk,303 simpleRepeat,73 xenoRefGene,293 reflects rmsk,183 refseq geneMapper,43 geneMapper,79 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,291 region gap,26 netDm2,85 regions augustusGene,76 chainDm2,101 genscan,48 microsat,14 netDm2,40 simpleRepeat,39 regulaci geneid,39 related augustusGene,242 relationship est,96 intronEst,171 netDm2,344 relative gold,100 netDm2,360 relevant est,160 intronEst,235 mrna,106 remaining blastDm2FB,198 chainDm2,399 removed chainDm2,307 repbase rmsk,81 rmsk,93 rmsk,306 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeating rmsk,2 repeatmasker chainDm2,437 netDm2,456 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainDm2,428 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 netDm2,447 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive rmsk,315 represent chainDm2,99 chainDm2,128 est,41 intronEst,52 netDm2,132 netDm2,137 represented gap,13 rmsk,49 required blastDm2FB,200 requiring intronEst,88 res chainDm2,567 est,725 est,745 geneid,189 intronEst,800 intronEst,820 microsat,127 mrna,437 mrna,457 netDm2,536 simpleRepeat,87 xenoRefGene,302 research rmsk,90 result chainDm2,141 resulting chainDm2,310 chainDm2,327 chainDm2,336 retrieve est,544 intronEst,619 retroposons rmsk,144 reverse est,419 est,453 est,470 intronEst,494 intronEst,528 intronEst,545 review xenoRefGene,64 reviewed xenoRefGene,74 rna est,104 est,413 geneid,29 geneid,148 intronEst,179 intronEst,488 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,233 xenoRefGene,279 rnas xenoRefGene,210 robert chainDm2,474 netDm2,469 roderic geneid,22 rolling rmsk,171 ross chainDm2,425 netDm2,444 rrna rmsk,162 running chainDm2,384 s augustusGene,104 augustusGene,221 augustusGene,319 blastDm2FB,145 chainDm2,509 chainDm2,534 chainDm2,547 geneMapper,64 geneMapper,87 geneid,25 genscan,190 genscan,194 genscan,210 netDm2,486 netDm2,503 netDm2,516 rmsk,18 rmsk,252 saccharomyces augustusGene,223 salzberg genscan,189 same netDm2,211 netDm2,226 sample augustusGene,133 sampling augustusGene,129 santa chainDm2,449 netDm2,419 satellite rmsk,155 scaffold gold,51 gold,71 gold,109 scaffolds gold,34 schwartz chainDm2,416 chainDm2,546 netDm2,435 netDm2,515 sci chainDm2,524 chainDm2,532 netDm2,501 science genscan,203 scientists est,708 intronEst,783 mrna,420 xenoRefGene,284 scored geneid,79 geneid,97 scores geneid,103 geneid,137 scoring chainDm2,28 chainDm2,38 chainDm2,376 chainDm2,392 chainDm2,486 scott chainDm2,415 netDm2,434 screens rmsk,22 scrna rmsk,164 search blastDm2FB,180 searls genscan,191 section genscan,153 rmsk,104 sections netDm2,301 see augustusGene,42 blastDm2FB,166 genscan,57 intronEst,118 microsat,101 rmsk,278 simpleRepeat,63 xenoRefGene,200 select genscan,90 xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 selecting microsat,60 semi-markov augustusGene,117 sep chainDm2,537 netDm2,506 rmsk,320 sequence augustusGene,32 augustusGene,70 blastDm2FB,46 blastDm2FB,88 chainDm2,73 chainDm2,135 chainDm2,489 est,21 est,92 est,390 est,399 est,545 est,683 est,698 est,705 gap,23 gap,34 geneid,82 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,620 intronEst,758 intronEst,773 intronEst,780 mrna,336 mrna,397 mrna,410 mrna,417 netDm2,49 rmsk,48 rmsk,62 xenoRefGene,268 xenoRefGene,280 sequenced geneMapper,32 sequences blastDm2FB,76 est,32 est,564 est,572 geneid,60 intronEst,43 intronEst,639 intronEst,647 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,32 sequencing gap,6 gcPercent,11 gold,7 netDm2,383 series gap,37 set blastDm2FB,160 geneid,123 sets augustusGene,158 sf blastDm2FB,168 shaded est,70 mrna,51 shading intronEst,143 rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 shotgun gold,21 gold,140 should est,321 est,597 intronEst,396 intronEst,672 mrna,267 show intronEst,31 intronEst,64 xenoRefGene,125 shown est,150 gold,92 intronEst,225 microsat,48 mrna,96 shows augustusGene,15 augustusGene,108 chainDm2,18 est,15 gcPercent,17 geneMapper,13 geneid,13 genscan,13 gold,11 intronEst,16 mrna,16 netDm2,18 xenoRefGene,14 side est,560 intronEst,635 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 signs intronEst,32 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainDm2,52 since chainDm2,299 sine rmsk,128 single blastDm2FB,113 chainDm2,93 chainDm2,102 chainDm2,348 chainDm2,353 est,594 est,647 intronEst,669 intronEst,722 mrna,361 xenoRefGene,232 single-lined chainDm2,176 single-read est,31 intronEst,42 site genscan,157 sites augustusGene,54 augustusGene,59 geneid,71 geneid,94 geneid,107 size blastDm2FB,107 sizes gold,46 skepticism est,602 intronEst,677 smit chainDm2,433 chainDm2,550 netDm2,452 netDm2,519 rmsk,17 rmsk,288 snrna rmsk,163 so netDm2,124 soft-masked rmsk,264 software rmsk,221 some est,158 est,516 est,532 est,635 intronEst,233 intronEst,591 intronEst,607 intronEst,710 mrna,104 sometimes simpleRepeat,50 sorted netDm2,270 sourav geneMapper,108 spaces gold,90 spain geneid,48 span netDm2,83 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainDm2,69 chainDm2,138 chainDm2,157 netDm2,389 species-specific augustusGene,156 specific est,197 intronEst,272 mrna,143 simpleRepeat,53 splice augustusGene,53 geneid,70 genscan,156 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,89 split chainDm2,305 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,524 geneid,72 intronEst,599 state chainDm2,410 netDm2,429 statistical augustusGene,47 stefanie augustusGene,267 step geneid,69 stop geneid,74 storage chainDm2,467 netDm2,462 strand chainDm2,212 est,77 intronEst,152 structure augustusGene,113 geneid,65 geneid,129 structures augustusGene,164 genscan,215 studying netDm2,43 submitted est,700 intronEst,775 mrna,412 submodel augustusGene,331 subsections chainDm2,369 subset est,136 intronEst,211 microsat,54 mrna,82 substantial chainDm2,134 successful est,554 intronEst,629 such netDm2,350 sum geneid,100 geneid,134 supercontigs gold,39 suppl augustusGene,336 symp chainDm2,492 syn netDm2,207 syntenic netDm2,357 syntenically augustusGene,297 system chainDm2,29 systems chainDm2,39 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 tags est,22 intronEst,23 tail est,465 intronEst,540 taken est,436 intronEst,511 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 tblastn blastDm2FB,20 blastDm2FB,91 blastDm2FB,152 techniques est,530 intronEst,605 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term est,171 intronEst,246 mrna,117 terminal rmsk,138 terms est,215 intronEst,290 mrna,161 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 than blastDm2FB,120 chainDm2,34 est,272 est,537 gcPercent,42 intronEst,347 intronEst,612 mrna,218 netDm2,196 rmsk,237 xenoRefGene,23 xenoRefGene,226 thanks augustusGene,248 geneMapper,106 geneid,143 genscan,170 rmsk,285 that blastDm2FB,77 blastDm2FB,130 chainDm2,30 chainDm2,106 chainDm2,132 chainDm2,282 chainDm2,295 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,620 est,641 gap,45 genscan,141 gold,66 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,695 intronEst,716 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 netDm2,82 netDm2,104 netDm2,320 netDm2,331 rmsk,42 rmsk,231 rmsk,239 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastDm2FB,23 blastDm2FB,26 blastDm2FB,33 blastDm2FB,43 blastDm2FB,52 blastDm2FB,60 blastDm2FB,65 blastDm2FB,73 blastDm2FB,85 blastDm2FB,90 blastDm2FB,94 blastDm2FB,112 blastDm2FB,123 blastDm2FB,135 blastDm2FB,143 blastDm2FB,156 blastDm2FB,197 chainDm2,70 chainDm2,76 chainDm2,84 chainDm2,97 chainDm2,114 chainDm2,122 chainDm2,170 chainDm2,199 chainDm2,205 chainDm2,210 chainDm2,218 chainDm2,230 chainDm2,245 chainDm2,251 chainDm2,254 chainDm2,269 chainDm2,275 chainDm2,279 chainDm2,300 chainDm2,309 chainDm2,317 chainDm2,324 chainDm2,326 chainDm2,335 chainDm2,344 chainDm2,367 chainDm2,372 chainDm2,389 chainDm2,398 chainDm2,438 chainDm2,444 chainDm2,462 chainDm2,469 chainDm2,516 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,424 est,438 est,452 est,463 est,469 est,479 est,483 est,494 est,498 est,505 est,514 est,518 est,528 est,548 est,574 est,580 est,615 est,621 est,653 est,656 est,672 est,681 est,702 est,740 gap,19 gap,33 gap,40 gcPercent,13 gcPercent,18 geneMapper,46 geneMapper,67 geneMapper,82 geneid,17 geneid,36 geneid,67 geneid,81 geneid,93 geneid,99 geneid,102 geneid,105 geneid,109 geneid,110 geneid,122 geneid,127 geneid,133 geneid,136 geneid,139 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,41 gold,64 gold,69 gold,77 gold,94 gold,99 gold,105 gold,119 gold,124 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,499 intronEst,513 intronEst,527 intronEst,538 intronEst,544 intronEst,554 intronEst,558 intronEst,569 intronEst,573 intronEst,580 intronEst,589 intronEst,593 intronEst,603 intronEst,623 intronEst,649 intronEst,655 intronEst,690 intronEst,696 intronEst,728 intronEst,731 intronEst,747 intronEst,756 intronEst,777 intronEst,815 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,353 mrna,356 mrna,367 mrna,370 mrna,386 mrna,395 mrna,401 mrna,414 mrna,452 netDm2,19 netDm2,30 netDm2,46 netDm2,56 netDm2,72 netDm2,78 netDm2,92 netDm2,110 netDm2,127 netDm2,130 netDm2,135 netDm2,148 netDm2,161 netDm2,163 netDm2,170 netDm2,173 netDm2,180 netDm2,186 netDm2,199 netDm2,210 netDm2,214 netDm2,217 netDm2,225 netDm2,229 netDm2,235 netDm2,246 netDm2,249 netDm2,260 netDm2,264 netDm2,272 netDm2,276 netDm2,280 netDm2,288 netDm2,333 netDm2,343 netDm2,362 netDm2,365 netDm2,377 netDm2,401 netDm2,406 netDm2,415 netDm2,457 netDm2,464 netDm2,493 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 simpleRepeat,60 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,189 xenoRefGene,202 xenoRefGene,209 xenoRefGene,214 xenoRefGene,238 xenoRefGene,241 xenoRefGene,257 xenoRefGene,266 xenoRefGene,289 xenoRefGene,297 them netDm2,295 rmsk,277 then chainDm2,320 netDm2,284 netDm2,369 there chainDm2,161 est,583 intronEst,658 therefore gold,113 these augustusGene,95 augustusGene,190 chainDm2,53 chainDm2,379 est,551 geneMapper,34 geneMapper,119 geneid,152 intronEst,626 microsat,24 netDm2,97 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 they chainDm2,241 this augustusGene,13 augustusGene,106 augustusGene,224 blastDm2FB,17 blastDm2FB,203 chainDm2,16 chainDm2,139 est,13 est,50 est,115 est,142 est,367 est,404 est,556 est,592 est,605 est,687 est,690 gap,8 gcPercent,58 geneMapper,11 geneid,11 genscan,11 genscan,65 genscan,128 gold,9 gold,61 gold,129 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,631 intronEst,667 intronEst,680 intronEst,762 intronEst,765 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 netDm2,16 netDm2,52 netDm2,84 netDm2,310 rmsk,10 rmsk,51 rmsk,114 rmsk,301 simpleRepeat,12 simpleRepeat,31 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,181 xenoRefGene,206 xenoRefGene,272 those est,360 est,393 intronEst,435 intronEst,468 microsat,62 mrna,306 rmsk,238 xenoRefGene,220 thousands chainDm2,216 threshold chainDm2,395 through rmsk,268 xenoRefGene,90 time netDm2,293 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,325 mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastDm2FB,42 blastDm2FB,68 blastDm2FB,201 chainDm2,110 chainDm2,181 chainDm2,193 chainDm2,232 chainDm2,243 chainDm2,248 chainDm2,260 chainDm2,266 chainDm2,289 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,409 est,478 est,543 est,603 est,701 geneMapper,30 geneMapper,45 geneMapper,75 geneMapper,81 geneMapper,107 geneid,54 geneid,144 geneid,164 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,122 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,484 intronEst,553 intronEst,618 intronEst,678 intronEst,776 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,413 netDm2,143 netDm2,157 netDm2,241 netDm2,286 netDm2,298 netDm2,338 netDm2,361 netDm2,371 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 simpleRepeat,81 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,199 together blastDm2FB,101 chainDm2,90 tolerate chainDm2,43 tool blastDm2FB,159 blastDm2FB,181 est,743 intronEst,818 mrna,455 xenoRefGene,300 tools rmsk,294 top netDm2,198 xenoRefGene,95 top-level netDm2,73 netDm2,93 track augustusGene,14 augustusGene,107 blastDm2FB,18 blastDm2FB,56 blastDm2FB,204 chainDm2,17 chainDm2,86 chainDm2,262 est,14 est,51 est,116 est,141 est,153 est,368 est,606 est,688 est,691 gap,9 gcPercent,16 gcPercent,59 geneMapper,12 geneid,12 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,62 gold,130 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,681 intronEst,763 intronEst,766 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,403 netDm2,17 rmsk,11 rmsk,52 rmsk,115 rmsk,302 simpleRepeat,13 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,273 tracks augustusGene,41 est,59 genscan,56 genscan,74 intronEst,137 mrna,40 netDm2,266 xenoRefGene,56 traditional chainDm2,35 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,420 intronEst,55 intronEst,495 transcript est,515 intronEst,590 transcriptase est,471 intronEst,546 transcription est,101 est,454 est,501 est,523 intronEst,176 intronEst,529 intronEst,576 intronEst,598 transcriptional genscan,28 transcripts augustusGene,124 transfer geneMapper,76 transferring geneMapper,21 geneMapper,40 translation augustusGene,57 translational genscan,29 transposons chainDm2,294 chainDm2,318 netDm2,396 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming netDm2,294 trna rmsk,161 true augustusGene,132 turn chainDm2,249 xenoRefGene,133 two netDm2,402 type est,169 est,199 gold,134 intronEst,244 intronEst,274 mrna,115 mrna,145 types augustusGene,89 est,248 intronEst,323 mrna,194 netDm2,194 typically est,33 est,423 gcPercent,52 intronEst,44 intronEst,498 u chainDm2,533 geneMapper,114 netDm2,502 ucb geneMapper,5 ucsc est,695 gcPercent,63 intronEst,770 mrna,407 rmsk,211 xenoRefGene,277 undergone xenoRefGene,69 underlies genscan,142 underlying xenoRefGene,37 underneath netDm2,330 ungapped netDm2,133 unit geneid,174 university chainDm2,411 chainDm2,445 netDm2,416 netDm2,430 unknown rmsk,173 unprocessed chainDm2,196 est,566 intronEst,641 unsequenced chainDm2,153 unspliced est,8 est,595 intronEst,117 intronEst,670 up blastDm2FB,79 gold,68 rmsk,117 update est,722 intronEst,797 mrna,434 rmsk,82 rmsk,94 rmsk,307 updated xenoRefGene,41 usa chainDm2,525 use est,166 gold,78 intronEst,241 mrna,112 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 est,123 est,264 est,323 est,534 geneMapper,71 genscan,159 intronEst,198 intronEst,339 intronEst,398 intronEst,609 mrna,69 mrna,210 mrna,269 netDm2,50 netDm2,285 netDm2,337 netDm2,370 rmsk,213 rmsk,258 rmsk,298 useful microsat,20 netDm2,36 netDm2,167 user est,382 intronEst,457 mrna,328 users xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastDm2FB,64 blastDm2FB,89 blastDm2FB,102 chainDm2,25 est,617 geneMapper,61 geneid,83 geneid,162 intronEst,692 microsat,90 mrna,355 netDm2,259 rmsk,15 rmsk,249 xenoRefGene,218 usually est,40 intronEst,51 utilities blastDm2FB,199 utrs geneMapper,25 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 validate xenoRefGene,153 validation genscan,107 value est,274 intronEst,349 mrna,220 variation microsat,7 rmsk,6 simpleRepeat,8 varies gap,49 vb chainDm2,483 vector est,431 intronEst,506 version augustusGene,23 augustusGene,263 rmsk,58 versions augustusGene,279 rmsk,217 rmsk,233 vertebrates augustusGene,209 very est,638 intronEst,713 view est,210 intronEst,285 mrna,156 netDm2,144 viewed est,599 intronEst,674 w blastDm2FB,170 blastDm2FB,172 chainDm2,485 chainDm2,505 chainDm2,561 gold,136 netDm2,482 netDm2,530 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastDm2FB,192 chainDm2,406 chainDm2,441 est,660 est,692 gcPercent,60 geneMapper,70 intronEst,735 intronEst,767 microsat,108 mrna,374 mrna,404 netDm2,283 netDm2,328 netDm2,336 netDm2,356 netDm2,368 netDm2,393 netDm2,425 rmsk,12 simpleRepeat,68 xenoRefGene,245 xenoRefGene,274 webb chainDm2,420 chainDm2,457 netDm2,439 weekly xenoRefGene,42 weight geneid,85 well augustusGene,78 est,503 est,526 genscan,36 intronEst,578 intronEst,601 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastDm2FB,57 blastDm2FB,82 blastDm2FB,99 blastDm2FB,126 blastDm2FB,148 blastDm2FB,205 chainDm2,306 chainDm2,313 chainDm2,319 chainDm2,329 chainDm2,381 chainDm2,396 chainDm2,429 chainDm2,471 est,553 est,612 geneMapper,59 gold,23 gold,31 intronEst,628 intronEst,687 mrna,350 mrna,398 netDm2,254 netDm2,412 netDm2,448 netDm2,466 xenoRefGene,211 xenoRefGene,228 xenoRefGene,269 wheeler est,719 intronEst,794 mrna,431 when augustusGene,188 augustusGene,238 est,146 est,156 est,645 gold,28 intronEst,35 intronEst,221 intronEst,231 intronEst,720 mrna,92 mrna,102 mrna,359 netDm2,95 xenoRefGene,230 where chainDm2,160 gold,85 whether netDm2,352 which augustusGene,159 augustusGene,227 chainDm2,239 est,106 est,233 est,460 est,485 est,632 geneid,32 intronEst,181 intronEst,308 intronEst,535 intronEst,560 intronEst,707 mrna,179 netDm2,317 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 while chainDm2,184 whole geneMapper,51 gold,138 netDm2,152 whole-genome gold,20 wildcards est,260 intronEst,335 mrna,206 will est,293 est,311 est,340 est,357 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 window gcPercent,32 windows gcPercent,8 gcPercent,33 gcPercent,43 wish est,235 intronEst,310 mrna,181 xenoRefGene,198 with augustusGene,127 augustusGene,322 blastDm2FB,59 blastDm2FB,84 chainDm2,175 chainDm2,186 chainDm2,315 chainDm2,422 chainDm2,454 chainDm2,564 est,105 est,462 est,600 est,637 est,680 gcPercent,34 gcPercent,44 gcPercent,54 geneMapper,93 geneid,62 intronEst,180 intronEst,537 intronEst,675 intronEst,712 intronEst,755 microsat,69 microsat,76 mrna,394 netDm2,271 netDm2,395 netDm2,441 netDm2,533 rmsk,195 simpleRepeat,52 xenoRefGene,221 xenoRefGene,265 within est,139 est,513 est,669 gold,49 gold,107 gold,128 intronEst,214 intronEst,588 intronEst,744 mrna,85 mrna,383 simpleRepeat,37 xenoRefGene,84 xenoRefGene,254 wj chainDm2,499 chainDm2,549 est,738 intronEst,813 mrna,450 netDm2,476 netDm2,518 xenoRefGene,295 worldwide est,709 intronEst,784 mrna,421 xenoRefGene,285 written blastDm2FB,193 blastDm2FB,206 genscan,19 microsat,109 simpleRepeat,69 yakuba blastDm2FB,45 blastDm2FB,87 blastDm2FB,97 chainDm2,22 chainDm2,51 chainDm2,124 chainDm2,172 chainDm2,304 chainDm2,355 est,2 est,5 est,19 est,608 gap,21 geneMapper,48 gold,18 intronEst,4 intronEst,20 intronEst,121 intronEst,683 mrna,2 mrna,5 mrna,20 mrna,348 netDm2,24 netDm2,32 xenoRefGene,4 xenoRefGene,25 xenoRefGene,216 yap chainDm2,482 you est,234 intronEst,309 mrna,180 xenoRefGene,197 z chainDm2,553 netDm2,522 zebrafish augustusGene,202 augustusGene,278 zhang chainDm2,418 chainDm2,552 netDm2,437 netDm2,521 zheng chainDm2,417 netDm2,436 zoomed-in genscan,103