0 nestedRepeats,237 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,421 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 1 augustusGene,310 chainMm10,385 chainMm10,516 chainMm10,706 chainMm10,1105 chainNetMm10,388 chainNetMm10,519 chainNetMm10,709 chainNetMm10,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 ensemblGeneScaffold,139 ensemblGeneScaffold,141 genscan,227 mrna,505 netMm10,385 netMm10,516 netMm10,706 netMm10,1105 xenoRefGene,384 100 augustusGene,134 chainMm10,1073 chainNetMm10,1076 gap,136 microsat,70 nestedRepeats,230 netMm10,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainMm10,745 chainNetMm10,748 nestedRepeats,238 netMm10,745 1000-2000 augustusGene,161 103-7 chainMm10,1106 chainNetMm10,1109 netMm10,1106 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainMm10,702 chainMm10,709 chainNetMm10,705 chainNetMm10,712 netMm10,702 netMm10,709 111 chainMm10,704 chainMm10,710 chainNetMm10,707 chainNetMm10,713 netMm10,704 netMm10,710 11484-9 chainMm10,1075 chainNetMm10,1078 netMm10,1075 115-26 chainMm10,1037 chainNetMm10,1040 netMm10,1037 11752248 ensGene,205 ensemblGeneScaffold,144 117900 chainMm10,726 chainMm10,738 chainNetMm10,729 chainNetMm10,741 netMm10,726 netMm10,738 118300 chainMm10,750 chainNetMm10,753 netMm10,750 11928468 chainMm10,1039 chainNetMm10,1042 netMm10,1039 11932250 mrna,529 xenoRefGene,314 12 mrna,525 xenoRefGene,310 12111 chainMm10,712 chainNetMm10,715 netMm10,712 12529312 chainMm10,1108 chainNetMm10,1111 netMm10,1108 127-163 genscan,206 13 chainMm10,1104 chainNetMm10,1107 netMm10,1104 1300 chainMm10,746 chainNetMm10,749 netMm10,746 134-41 windowmaskerSdust,112 14500911 chainMm10,1077 chainNetMm10,1080 netMm10,1077 14534192 augustusGene,340 14681350 mrna,511 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 152111 chainMm10,715 chainNetMm10,718 netMm10,715 15608248 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 18218656 augustusGene,315 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainMm10,419 chainMm10,424 chainMm10,707 chainNetMm10,422 chainNetMm10,427 chainNetMm10,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netMm10,419 netMm10,424 netMm10,707 simpleRepeat,92 windowmaskerSdust,111 20 chainMm10,1074 chainNetMm10,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netMm10,1074 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainMm10,1036 chainNetMm10,1039 ensGene,47 ensGene,198 ensemblGeneScaffold,92 ensemblGeneScaffold,137 mrna,523 netMm10,1036 xenoRefGene,308 2003 augustusGene,333 chainMm10,1070 chainMm10,1102 chainNetMm10,1073 chainNetMm10,1105 netMm10,1070 netMm10,1102 2004 mrna,503 2005 xenoRefGene,382 2006 gap,16 gold,18 windowmaskerSdust,107 2007 chainMm10,1009 chainNetMm10,1012 netMm10,1009 2008 augustusGene,308 2011 chainMm10,5 chainMm10,67 chainMm10,301 chainNetMm10,6 chainNetMm10,70 chainNetMm10,304 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netMm10,5 netMm10,67 netMm10,301 2013 mrna,478 2014 xenoRefGene,349 2111 chainMm10,711 chainNetMm10,714 netMm10,711 217 gap,138 217900 chainMm10,727 chainMm10,739 chainNetMm10,730 chainNetMm10,742 netMm10,727 netMm10,739 218300 chainMm10,751 chainNetMm10,754 netMm10,751 22 windowmaskerSdust,110 22900 chainMm10,724 chainMm10,736 chainNetMm10,727 chainNetMm10,739 netMm10,724 netMm10,736 23193287 mrna,485 23300 chainMm10,748 chainNetMm10,751 netMm10,748 24 augustusGene,311 24259432 xenoRefGene,356 25 genscan,225 xenoRefGene,268 252111 chainMm10,716 chainNetMm10,719 netMm10,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2900 chainMm10,723 chainMm10,735 chainNetMm10,726 chainNetMm10,738 netMm10,723 netMm10,735 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainMm10,431 chainMm10,708 chainNetMm10,434 chainNetMm10,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netMm10,431 netMm10,708 3.1 augustusGene,24 30 chainMm10,1072 chainNetMm10,1075 ensGene,201 ensemblGeneScaffold,140 netMm10,1072 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainMm10,680 chainNetMm10,683 netMm10,680 317900 chainMm10,728 chainMm10,740 chainNetMm10,731 chainNetMm10,743 netMm10,728 netMm10,740 318300 chainMm10,752 chainNetMm10,755 netMm10,752 32 mrna,506 32111 chainMm10,713 chainNetMm10,716 netMm10,713 33 xenoRefGene,385 3300 chainMm10,747 chainNetMm10,750 netMm10,747 350 chainMm10,718 chainMm10,730 chainNetMm10,721 chainNetMm10,733 netMm10,718 netMm10,730 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 38-41 ensGene,203 ensemblGeneScaffold,142 39 gap,137 39s ensGene,163 4 mrna,526 xenoRefGene,311 41 mrna,480 418-420 nestedRepeats,359 rmsk,382 42 xenoRefGene,351 425 chainMm10,719 chainMm10,731 chainNetMm10,722 chainNetMm10,734 netMm10,719 netMm10,731 450 chainMm10,720 chainMm10,732 chainNetMm10,723 chainNetMm10,735 netMm10,720 netMm10,732 467 gap,132 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 5-base gc5Base,6 gc5Base,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 573-80 microsat,133 simpleRepeat,93 57900 chainMm10,725 chainMm10,737 chainNetMm10,728 chainNetMm10,740 netMm10,725 netMm10,737 58300 chainMm10,749 chainNetMm10,752 netMm10,749 5835792 gold,160 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainMm10,721 chainMm10,733 chainNetMm10,724 chainNetMm10,736 netMm10,721 netMm10,733 637-44 augustusGene,313 656-64 mrna,527 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 680 gold,153 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 72111 chainMm10,714 chainNetMm10,717 netMm10,714 743-8 nestedRepeats,414 rmsk,437 750 chainMm10,742 chainNetMm10,745 netMm10,742 78-94 genscan,228 825 chainMm10,743 chainNetMm10,746 netMm10,743 847 gold,152 850 chainMm10,744 chainNetMm10,747 netMm10,744 879 gap,133 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainMm10,722 chainMm10,734 chainNetMm10,725 chainNetMm10,737 netMm10,722 netMm10,734 9149143 genscan,230 96 mrna,428 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainMm10,75 chainMm10,144 chainMm10,196 chainMm10,451 chainMm10,461 chainMm10,465 chainMm10,532 chainMm10,549 chainMm10,552 chainMm10,618 chainMm10,623 chainMm10,628 chainMm10,632 chainMm10,643 chainMm10,675 chainMm10,794 chainMm10,808 chainMm10,814 chainMm10,820 chainMm10,824 chainMm10,827 chainMm10,855 chainMm10,1045 chainMm10,1069 chainMm10,1085 chainNetMm10,78 chainNetMm10,147 chainNetMm10,199 chainNetMm10,454 chainNetMm10,464 chainNetMm10,468 chainNetMm10,535 chainNetMm10,552 chainNetMm10,555 chainNetMm10,621 chainNetMm10,626 chainNetMm10,631 chainNetMm10,635 chainNetMm10,646 chainNetMm10,678 chainNetMm10,797 chainNetMm10,811 chainNetMm10,817 chainNetMm10,823 chainNetMm10,827 chainNetMm10,830 chainNetMm10,858 chainNetMm10,1048 chainNetMm10,1072 chainNetMm10,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 ensemblGeneScaffold,77 gap,99 gap,103 gc5Base,44 genscan,102 genscan,132 gold,117 gold,123 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netMm10,75 netMm10,144 netMm10,196 netMm10,451 netMm10,461 netMm10,465 netMm10,532 netMm10,549 netMm10,552 netMm10,618 netMm10,623 netMm10,628 netMm10,632 netMm10,643 netMm10,675 netMm10,794 netMm10,808 netMm10,814 netMm10,820 netMm10,824 netMm10,827 netMm10,855 netMm10,1045 netMm10,1069 netMm10,1085 quality,44 quality,59 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 windowmaskerSdust,91 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainMm10,668 chainNetMm10,671 netMm10,668 aa windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainMm10,581 chainNetMm10,584 netMm10,581 about chainMm10,457 chainMm10,470 chainMm10,844 chainNetMm10,460 chainNetMm10,473 chainNetMm10,847 gap,35 genscan,127 gold,37 microsat,98 mrna,348 netMm10,457 netMm10,470 netMm10,844 simpleRepeat,59 xenoRefGene,176 above chainMm10,529 chainMm10,541 chainMm10,561 chainNetMm10,532 chainNetMm10,544 chainNetMm10,564 nestedRepeats,218 netMm10,529 netMm10,541 netMm10,561 abundance chainMm10,178 chainNetMm10,181 netMm10,178 acad chainMm10,1065 chainNetMm10,1068 netMm10,1065 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 accession xenoRefGene,116 xenoRefGene,128 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainMm10,667 chainNetMm10,670 netMm10,667 acids ensGene,196 ensemblGeneScaffold,135 microsat,126 mrna,476 mrna,501 simpleRepeat,86 xenoRefGene,347 xenoRefGene,380 added chainMm10,591 chainNetMm10,594 nestedRepeats,147 netMm10,591 additional nestedRepeats,288 rmsk,295 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 advice chainMm10,930 chainMm10,962 chainNetMm10,933 chainNetMm10,965 netMm10,930 netMm10,962 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainMm10,85 chainNetMm10,88 netMm10,85 after chainMm10,902 chainNetMm10,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netMm10,902 against mrna,341 mrna,389 xenoRefGene,220 agarwala windowmaskerSdust,98 agp gap,49 gap,58 gap,65 gold,48 gold,57 gold,64 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 ensemblGeneScaffold,91 ensemblGeneScaffold,128 xenoRefGene,338 algorithm augustusGene,130 align chainMm10,194 chainNetMm10,197 netMm10,194 alignable chainMm10,22 chainMm10,38 chainNetMm10,25 chainNetMm10,41 netMm10,22 netMm10,38 aligned chainMm10,584 chainNetMm10,587 mrna,388 mrna,400 netMm10,584 xenoRefGene,219 xenoRefGene,240 aligning chainMm10,133 chainMm10,329 chainMm10,359 chainNetMm10,136 chainNetMm10,332 chainNetMm10,362 netMm10,133 netMm10,329 netMm10,359 alignment chainMm10,257 chainMm10,1012 chainNetMm10,260 chainNetMm10,1015 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netMm10,8 netMm10,257 netMm10,1012 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments augustusGene,300 chainMm10,9 chainMm10,63 chainMm10,444 chainMm10,596 chainMm10,608 chainMm10,616 chainMm10,642 chainMm10,760 chainMm10,1032 chainMm10,1097 chainNetMm10,12 chainNetMm10,66 chainNetMm10,447 chainNetMm10,599 chainNetMm10,611 chainNetMm10,619 chainNetMm10,645 chainNetMm10,763 chainNetMm10,1035 chainNetMm10,1100 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 mrna,15 mrna,414 netMm10,63 netMm10,444 netMm10,596 netMm10,608 netMm10,616 netMm10,642 netMm10,760 netMm10,1032 netMm10,1097 rmsk,306 xenoRefGene,254 all augustusGene,207 chainMm10,615 chainNetMm10,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 mrna,135 mrna,189 mrna,244 nestedRepeats,138 nestedRepeats,170 netMm10,615 rmsk,65 allows augustusGene,168 chainMm10,80 chainNetMm10,83 mrna,334 netMm10,80 xenoRefGene,147 alone augustusGene,33 already chainMm10,805 chainNetMm10,808 netMm10,805 also chainMm10,91 chainNetMm10,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 gap,31 gold,33 mrna,216 mrna,324 mrna,368 netMm10,91 alter mrna,72 alternating gold,89 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,120 amount rmsk,215 amsterdam genscan,201 an chainMm10,151 chainMm10,177 chainMm10,183 chainNetMm10,154 chainNetMm10,180 chainNetMm10,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5Base,65 nestedRepeats,196 nestedRepeats,347 netMm10,151 netMm10,177 netMm10,183 quality,78 rmsk,370 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainMm10,97 chainMm10,111 chainMm10,225 chainMm10,233 chainMm10,247 chainMm10,285 chainMm10,307 chainMm10,433 chainMm10,587 chainMm10,622 chainMm10,630 chainMm10,771 chainMm10,849 chainMm10,881 chainMm10,892 chainMm10,901 chainMm10,926 chainMm10,941 chainMm10,966 chainMm10,972 chainMm10,978 chainMm10,985 chainMm10,991 chainMm10,1055 chainMm10,1060 chainNetMm10,10 chainNetMm10,100 chainNetMm10,114 chainNetMm10,228 chainNetMm10,236 chainNetMm10,250 chainNetMm10,288 chainNetMm10,310 chainNetMm10,436 chainNetMm10,590 chainNetMm10,625 chainNetMm10,633 chainNetMm10,774 chainNetMm10,852 chainNetMm10,884 chainNetMm10,895 chainNetMm10,904 chainNetMm10,929 chainNetMm10,944 chainNetMm10,969 chainNetMm10,975 chainNetMm10,981 chainNetMm10,988 chainNetMm10,994 chainNetMm10,1058 chainNetMm10,1063 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 ensemblGeneScaffold,8 ensemblGeneScaffold,33 ensemblGeneScaffold,74 gap,5 gap,80 gap,102 gc5Base,9 gc5Base,22 gc5Base,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netMm10,97 netMm10,111 netMm10,225 netMm10,233 netMm10,247 netMm10,285 netMm10,307 netMm10,433 netMm10,587 netMm10,622 netMm10,630 netMm10,771 netMm10,849 netMm10,881 netMm10,892 netMm10,901 netMm10,926 netMm10,941 netMm10,966 netMm10,972 netMm10,978 netMm10,985 netMm10,991 netMm10,1055 netMm10,1060 quality,8 quality,99 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 windowmaskerSdust,10 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annotated rmsk,67 annotation chainMm10,296 chainNetMm10,299 ensGene,165 ensemblGeneScaffold,105 netMm10,296 rmsk,38 annotations ensGene,156 genscan,120 nestedRepeats,71 xenoRefGene,186 any mrna,259 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 apply mrna,131 appropriate xenoRefGene,110 apr genscan,224 mrna,524 xenoRefGene,309 apsects gc5Base,51 archive ensGene,142 are augustusGene,27 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,140 chainMm10,208 chainMm10,219 chainMm10,318 chainMm10,387 chainMm10,408 chainMm10,415 chainMm10,498 chainMm10,687 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,143 chainNetMm10,211 chainNetMm10,222 chainNetMm10,321 chainNetMm10,390 chainNetMm10,411 chainNetMm10,418 chainNetMm10,501 chainNetMm10,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 ensemblGeneScaffold,29 gap,23 gap,68 genscan,25 genscan,160 gold,25 gold,83 gold,100 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netMm10,21 netMm10,40 netMm10,53 netMm10,140 netMm10,208 netMm10,219 netMm10,318 netMm10,387 netMm10,408 netMm10,415 netMm10,498 netMm10,687 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5Base,37 arian chainMm10,939 chainNetMm10,942 nestedRepeats,305 netMm10,939 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 as augustusGene,77 augustusGene,79 chainMm10,460 chainMm10,500 chainMm10,523 chainMm10,538 chainMm10,798 chainMm10,853 chainMm10,911 chainNetMm10,463 chainNetMm10,503 chainNetMm10,526 chainNetMm10,541 chainNetMm10,801 chainNetMm10,856 chainNetMm10,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 gap,70 genscan,35 genscan,37 microsat,21 nestedRepeats,125 netMm10,460 netMm10,500 netMm10,523 netMm10,538 netMm10,798 netMm10,853 netMm10,911 quality,90 rmsk,53 rmsk,55 windowmaskerSdust,18 aspects quality,66 assemblies augustusGene,196 augustusGene,237 chainMm10,317 chainMm10,579 chainNetMm10,320 chainNetMm10,582 netMm10,317 netMm10,579 rmsk,107 assembly augustusGene,197 chainMm10,149 chainMm10,156 chainMm10,304 chainNetMm10,152 chainNetMm10,159 chainNetMm10,307 ensemblGeneScaffold,2 ensemblGeneScaffold,6 ensemblGeneScaffold,24 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 netMm10,149 netMm10,156 netMm10,304 quality,25 quality,95 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assembly.txt ensemblGeneScaffold,73 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5Base,34 rmsk,224 simpleRepeat,51 astashyn xenoRefGene,325 at chainMm10,417 chainMm10,793 chainMm10,915 chainMm10,950 chainMm10,955 chainMm10,996 chainNetMm10,420 chainNetMm10,796 chainNetMm10,918 chainNetMm10,953 chainNetMm10,958 chainNetMm10,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netMm10,417 netMm10,793 netMm10,915 netMm10,950 netMm10,955 netMm10,996 quality,28 rmsk,243 rmsk,267 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 auml windowmaskerSdust,95 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 rmsk,73 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 averaged quality,51 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainMm10,600 chainMm10,607 chainNetMm10,603 chainNetMm10,610 netMm10,600 netMm10,607 axtchain chainMm10,612 chainMm10,698 chainMm10,946 chainNetMm10,615 chainNetMm10,701 chainNetMm10,949 netMm10,612 netMm10,698 netMm10,946 back chainMm10,592 chainNetMm10,595 netMm10,592 baertsch augustusGene,290 chainMm10,984 chainMm10,1042 chainMm10,1088 chainNetMm10,987 chainNetMm10,1045 chainNetMm10,1091 netMm10,984 netMm10,1042 netMm10,1088 band cytoBandIdeo,2 barker ensGene,170 ensemblGeneScaffold,109 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,356 mrna,409 mrna,417 mrna,429 quality,22 quality,39 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 based augustusGene,28 chainMm10,320 chainMm10,346 chainNetMm10,323 chainNetMm10,349 genscan,26 netMm10,320 netMm10,346 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,139 gc5Base,25 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 be augustusGene,99 chainMm10,106 chainMm10,427 chainNetMm10,109 chainNetMm10,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 gc5Base,41 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netMm10,106 netMm10,427 quality,56 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 xenoRefGene,86 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 bed3 windowmaskerSdust,76 been chainMm10,568 chainNetMm10,571 nestedRepeats,89 netMm10,568 rmsk,70 rmsk,109 before chainMm10,900 chainNetMm10,903 netMm10,900 below chainMm10,674 chainNetMm10,677 ensGene,54 ensemblGeneScaffold,97 genscan,154 genscan,168 nestedRepeats,68 netMm10,674 rmsk,104 benson microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainMm10,265 chainMm10,510 chainNetMm10,268 chainNetMm10,513 mrna,424 netMm10,265 netMm10,510 xenoRefGene,264 better mrna,52 between chainMm10,51 chainMm10,617 chainMm10,847 chainNetMm10,54 chainNetMm10,620 chainNetMm10,850 gap,126 gold,97 gold,102 mrna,16 netMm10,51 netMm10,617 netMm10,847 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 biocomput chainMm10,1035 chainNetMm10,1038 netMm10,1035 bioinformatics augustusGene,307 augustusGene,332 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 biology genscan,200 birds augustusGene,203 birney ensGene,172 ensemblGeneScaffold,111 black ensemblGeneScaffold,32 gap,71 gap,110 blast-like mrna,518 xenoRefGene,303 blastz chainMm10,912 chainMm10,1099 chainNetMm10,915 chainNetMm10,1102 netMm10,912 netMm10,1099 blat mrna,394 mrna,516 xenoRefGene,225 blat--the xenoRefGene,302 blocks chainMm10,44 chainMm10,639 chainMm10,660 chainNetMm10,47 chainNetMm10,642 chainNetMm10,663 gold,107 gold,134 netMm10,44 netMm10,639 netMm10,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 both chainMm10,95 chainMm10,115 chainMm10,168 chainMm10,890 chainNetMm10,98 chainNetMm10,118 chainNetMm10,171 chainNetMm10,893 netMm10,95 netMm10,115 netMm10,168 netMm10,890 xenoRefGene,124 xenoRefGene,195 bothgap chainMm10,741 chainNetMm10,744 netMm10,741 boundaries gold,82 box chainMm10,370 chainMm10,452 chainNetMm10,373 chainNetMm10,455 gap,111 mrna,151 mrna,162 mrna,202 netMm10,370 netMm10,452 xenoRefGene,214 boxes chainMm10,121 chainMm10,131 chainMm10,441 chainNetMm10,124 chainNetMm10,134 chainNetMm10,444 gap,72 mrna,122 nestedRepeats,126 netMm10,121 netMm10,131 netMm10,441 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch-point augustusGene,55 bridge gold,132 bridged gap,100 brown gold,92 gold,106 xenoRefGene,319 browser chainMm10,970 chainNetMm10,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netMm10,970 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainMm10,543 chainNetMm10,546 netMm10,543 rmsk,311 button chainMm10,341 chainNetMm10,344 netMm10,341 by augustusGene,147 augustusGene,266 augustusGene,282 chainMm10,108 chainMm10,124 chainMm10,311 chainMm10,374 chainMm10,411 chainMm10,429 chainMm10,807 chainMm10,919 chainMm10,938 chainMm10,958 chainMm10,982 chainMm10,1003 chainNetMm10,111 chainNetMm10,127 chainNetMm10,314 chainNetMm10,377 chainNetMm10,414 chainNetMm10,432 chainNetMm10,810 chainNetMm10,922 chainNetMm10,941 chainNetMm10,961 chainNetMm10,985 chainNetMm10,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 ensemblGeneScaffold,61 gap,93 gc5Base,81 genscan,20 genscan,88 genscan,121 gold,85 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netMm10,108 netMm10,124 netMm10,311 netMm10,374 netMm10,411 netMm10,429 netMm10,807 netMm10,919 netMm10,938 netMm10,958 netMm10,982 netMm10,1003 quality,105 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5Base,23 genscan,181 genscan,208 windowmaskerSdust,30 c-114100-125-31 chainMm10,669 chainNetMm10,672 netMm10,669 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainMm10,954 chainMm10,1000 chainNetMm10,957 chainNetMm10,1003 netMm10,954 netMm10,1000 cameron ensGene,174 ensemblGeneScaffold,113 can augustusGene,98 chainMm10,90 chainMm10,105 chainNetMm10,93 chainNetMm10,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 mrna,64 mrna,195 netMm10,90 netMm10,105 rmsk,116 simpleRepeat,35 xenoRefGene,85 cases chainMm10,190 chainMm10,398 chainNetMm10,193 chainNetMm10,401 netMm10,190 netMm10,398 categorized chainMm10,499 chainNetMm10,502 netMm10,499 cauldron chainMm10,1052 chainNetMm10,1055 netMm10,1052 cause chainMm10,481 chainNetMm10,484 netMm10,481 caused chainMm10,107 chainNetMm10,110 netMm10,107 cavanaugh mrna,462 cdna augustusGene,299 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,118 chainMm10,268 chainMm10,309 chainMm10,404 chainMm10,459 chainMm10,563 chainMm10,767 chainMm10,810 chainMm10,821 chainMm10,829 chainMm10,834 chainMm10,857 chainMm10,866 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,121 chainNetMm10,271 chainNetMm10,312 chainNetMm10,407 chainNetMm10,462 chainNetMm10,566 chainNetMm10,770 chainNetMm10,813 chainNetMm10,824 chainNetMm10,832 chainNetMm10,837 chainNetMm10,860 chainNetMm10,869 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netMm10,27 netMm10,57 netMm10,60 netMm10,118 netMm10,268 netMm10,309 netMm10,404 netMm10,459 netMm10,563 netMm10,767 netMm10,810 netMm10,821 netMm10,829 netMm10,834 netMm10,857 netMm10,866 chained chainMm10,8 chainnet chainMm10,784 chainMm10,989 chainNetMm10,787 chainNetMm10,992 netMm10,784 netMm10,989 chains chainMm10,193 chainMm10,204 chainMm10,215 chainMm10,314 chainMm10,353 chainMm10,386 chainMm10,391 chainMm10,413 chainMm10,425 chainMm10,432 chainMm10,489 chainMm10,657 chainMm10,672 chainMm10,686 chainMm10,755 chainMm10,776 chainMm10,791 chainMm10,851 chainMm10,882 chainMm10,977 chainNetMm10,196 chainNetMm10,207 chainNetMm10,218 chainNetMm10,317 chainNetMm10,356 chainNetMm10,389 chainNetMm10,394 chainNetMm10,416 chainNetMm10,428 chainNetMm10,435 chainNetMm10,492 chainNetMm10,660 chainNetMm10,675 chainNetMm10,689 chainNetMm10,758 chainNetMm10,779 chainNetMm10,794 chainNetMm10,854 chainNetMm10,885 chainNetMm10,980 netMm10,193 netMm10,204 netMm10,215 netMm10,314 netMm10,353 netMm10,386 netMm10,391 netMm10,413 netMm10,425 netMm10,432 netMm10,489 netMm10,657 netMm10,672 netMm10,686 netMm10,755 netMm10,776 netMm10,791 netMm10,851 netMm10,882 netMm10,977 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,68 changed rmsk,285 characteristic mrna,273 check chainMm10,336 chainNetMm10,339 netMm10,336 chen ensGene,176 ensemblGeneScaffold,115 chiaromonte chainMm10,1022 chainNetMm10,1025 netMm10,1022 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,229 mrna,268 chosen mrna,291 chr4 chainMm10,368 chainNetMm10,371 netMm10,368 chris genscan,21 genscan,172 chrm gold,158 chromosome chainMm10,245 chainMm10,323 chainMm10,348 chainMm10,356 chainMm10,366 chainMm10,375 chainMm10,522 chainMm10,537 chainMm10,553 chainMm10,621 chainMm10,626 chainNetMm10,248 chainNetMm10,326 chainNetMm10,351 chainNetMm10,359 chainNetMm10,369 chainNetMm10,378 chainNetMm10,525 chainNetMm10,540 chainNetMm10,556 chainNetMm10,624 chainNetMm10,629 cytoBandIdeo,1 netMm10,245 netMm10,323 netMm10,348 netMm10,356 netMm10,366 netMm10,375 netMm10,522 netMm10,537 netMm10,553 netMm10,621 netMm10,626 chromosome-based chainMm10,316 chainNetMm10,319 netMm10,316 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 clark ensGene,178 ensemblGeneScaffold,117 mrna,464 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5Base,83 quality,107 click chainMm10,449 chainMm10,463 chainNetMm10,452 chainNetMm10,466 gc5Base,56 netMm10,449 netMm10,463 quality,71 xenoRefGene,108 xenoRefGene,212 clipped nestedRepeats,224 closest augustusGene,241 cm xenoRefGene,330 code quality,102 windowmaskerSdust,34 coding simpleRepeat,38 xenoRefGene,210 codon genscan,100 genscan,122 mrna,329 mrna,354 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 xenoRefGene,163 xenoRefGene,170 collapsed nestedRepeats,173 collection xenoRefGene,31 color chainMm10,344 chainNetMm10,347 genscan,86 genscan,96 mrna,74 mrna,270 netMm10,344 rmsk,207 xenoRefGene,56 xenoRefGene,167 coloration gold,93 colored chainMm10,319 chainNetMm10,322 mrna,370 netMm10,319 coloring chainMm10,335 chainNetMm10,338 genscan,116 mrna,330 mrna,357 netMm10,335 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 combination mrna,232 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainMm10,10 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netMm10,10 compare mrna,339 xenoRefGene,153 comparison genscan,109 complete genscan,213 completely xenoRefGene,135 complex chainMm10,161 chainNetMm10,164 netMm10,161 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,135 compositional genscan,41 computational genscan,196 conditional augustusGene,118 configuration chainMm10,308 chainNetMm10,311 gc5Base,60 gc5Base,69 genscan,64 genscan,84 mrna,27 nestedRepeats,114 netMm10,308 quality,74 quality,82 rmsk,138 xenoRefGene,44 configured gc5Base,42 mrna,326 quality,57 xenoRefGene,87 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,163 contained chainMm10,883 chainNetMm10,886 netMm10,883 contains gap,117 mrna,188 xenoRefGene,140 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5Base,31 contig ensemblGeneScaffold,53 gold,81 contigs ensemblGeneScaffold,25 gap,84 gap,130 gold,73 gold,98 gold,115 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 xenoRefGene,90 conventions chainMm10,306 chainNetMm10,309 genscan,62 genscan,70 mrna,25 mrna,33 nestedRepeats,112 netMm10,306 rmsk,136 xenoRefGene,42 xenoRefGene,50 converted chainMm10,598 chainNetMm10,601 netMm10,598 coordinates ensemblGeneScaffold,20 copies microsat,80 corresponds mrna,171 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,131 counts gold,142 covered chainMm10,806 chainNetMm10,809 gap,24 gold,26 netMm10,806 cox ensGene,180 ensemblGeneScaffold,119 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create windowmaskerSdust,48 created chainMm10,981 chainNetMm10,984 ensemblGeneScaffold,67 microsat,89 netMm10,981 rmsk,13 creates chainMm10,631 chainNetMm10,634 netMm10,631 credits augustusGene,247 chainMm10,907 chainNetMm10,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 ensemblGeneScaffold,98 gc5Base,71 genscan,169 microsat,104 mrna,437 nestedRepeats,302 netMm10,907 quality,84 rmsk,325 simpleRepeat,66 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,246 mrna,264 mrna,302 mrna,320 cruz chainMm10,957 chainMm10,1002 chainNetMm10,960 chainNetMm10,1005 netMm10,957 netMm10,1002 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 ensemblGeneScaffold,121 culex augustusGene,220 curated xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,106 nestedRepeats,250 currently gold,78 curwen ensGene,184 ensemblGeneScaffold,123 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5Base,24 d augustusGene,293 chainMm10,1049 chainMm10,1093 chainNetMm10,1052 chainNetMm10,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 ensemblGeneScaffold,110 genscan,192 netMm10,1049 netMm10,1093 d23-6 mrna,509 d36-42 mrna,483 d501-4 xenoRefGene,388 d756-63 xenoRefGene,354 da mrna,461 mrna,489 dark xenoRefGene,73 darkly mrna,47 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 gap,96 gc5Base,73 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 rmsk,126 rmsk,287 xenoRefGene,34 xenoRefGene,287 database chainMm10,973 chainNetMm10,976 ensGene,193 ensemblGeneScaffold,132 mrna,481 mrna,507 nestedRepeats,345 netMm10,973 quality,97 rmsk,125 rmsk,368 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases mrna,455 david chainMm10,967 chainNetMm10,970 netMm10,967 de augustusGene,303 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,300 chainNetMm10,5 chainNetMm10,69 chainNetMm10,303 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,300 rmsk,412 rmsk,434 default chainMm10,312 chainNetMm10,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netMm10,312 xenoRefGene,101 xenoRefGene,194 definition gap,39 gold,41 deletion chainMm10,145 chainMm10,1054 chainNetMm10,148 chainNetMm10,1057 mrna,379 netMm10,145 netMm10,1054 rmsk,220 deletions chainMm10,113 chainMm10,176 chainNetMm10,116 chainNetMm10,179 netMm10,113 netMm10,176 delivered gap,51 gold,50 dense gold,67 mrna,39 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depicts gold,71 windowmaskerSdust,15 derived chainMm10,757 chainNetMm10,760 netMm10,757 described chainMm10,764 chainNetMm10,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netMm10,764 rmsk,96 rmsk,361 describes augustusGene,226 gap,60 gold,59 description augustusGene,12 chainMm10,12 chainMm10,769 chainNetMm10,15 chainNetMm10,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 ensemblGeneScaffold,10 ensemblGeneScaffold,78 gap,7 gc5Base,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netMm10,12 netMm10,769 quality,10 rmsk,9 simpleRepeat,11 windowmaskerSdust,12 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 desired mrna,231 detail genscan,164 detailed augustusGene,90 chainMm10,455 chainMm10,474 chainNetMm10,458 chainNetMm10,477 nestedRepeats,70 netMm10,455 netMm10,474 rmsk,37 details rmsk,119 determined windowmaskerSdust,19 determining chainMm10,479 chainNetMm10,482 netMm10,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainMm10,914 chainMm10,949 chainMm10,995 chainNetMm10,917 chainNetMm10,952 chainNetMm10,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netMm10,914 netMm10,949 netMm10,995 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainMm10,554 chainNetMm10,557 ensGene,22 gc5Base,50 genscan,54 netMm10,554 quality,65 rmsk,149 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 directory ensGene,86 ensGene,94 rmsk,134 discarded chainMm10,683 chainNetMm10,686 netMm10,683 xenoRefGene,235 discussion nestedRepeats,364 rmsk,387 diseases simpleRepeat,54 display chainMm10,237 chainMm10,305 chainMm10,350 chainMm10,380 chainMm10,439 chainMm10,468 chainMm10,497 chainMm10,971 chainNetMm10,240 chainNetMm10,308 chainNetMm10,353 chainNetMm10,383 chainNetMm10,442 chainNetMm10,471 chainNetMm10,500 chainNetMm10,974 genscan,61 genscan,69 genscan,104 gold,130 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netMm10,237 netMm10,305 netMm10,350 netMm10,380 netMm10,439 netMm10,468 netMm10,497 netMm10,971 quality,101 rmsk,135 rmsk,141 rmsk,212 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainMm10,416 chainMm10,513 chainMm10,688 chainNetMm10,419 chainNetMm10,516 chainNetMm10,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 ensemblGeneScaffold,30 gc5Base,54 nestedRepeats,124 nestedRepeats,217 netMm10,416 netMm10,513 netMm10,688 quality,69 xenoRefGene,202 displays chainMm10,120 chainNetMm10,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netMm10,120 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,84 distributions augustusGene,83 genscan,42 diverged chainMm10,906 chainNetMm10,909 nestedRepeats,212 netMm10,906 dj mrna,469 mrna,493 dl mrna,497 dna chainMm10,1015 chainNetMm10,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netMm10,1015 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 ensemblGeneScaffold,44 doc rmsk,132 document gap,57 gold,56 documentation gap,29 gold,31 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 done augustusGene,265 augustusGene,281 donor genscan,31 double chainMm10,128 chainMm10,157 chainNetMm10,131 chainNetMm10,160 netMm10,128 netMm10,157 double-lined chainMm10,217 chainNetMm10,220 netMm10,217 double-sided chainMm10,102 chainNetMm10,105 netMm10,102 down ensGene,186 ensemblGeneScaffold,125 download ensGene,93 ensGene,143 downloads ensGene,74 ensGene,85 rmsk,76 dr xenoRefGene,364 drawn gap,107 gold,126 drosophila augustusGene,213 due chainMm10,142 chainMm10,210 chainMm10,222 chainNetMm10,145 chainNetMm10,213 chainNetMm10,225 netMm10,142 netMm10,210 netMm10,222 duplication chainMm10,1053 chainNetMm10,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netMm10,1053 during chainMm10,811 chainNetMm10,814 netMm10,811 dynamic chainMm10,644 chainNetMm10,647 netMm10,644 e ensGene,173 ensemblGeneScaffold,112 e.g chainMm10,367 chainNetMm10,370 netMm10,367 each chainMm10,255 chainNetMm10,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,160 nestedRepeats,120 netMm10,255 quality,21 quality,29 editors genscan,195 either chainMm10,125 chainNetMm10,128 gap,86 netMm10,125 rmsk,273 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainMm10,817 chainNetMm10,820 netMm10,817 end rmsk,245 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 ensemblGeneScaffold,1 ensemblGeneScaffold,3 ensemblGeneScaffold,17 ensemblGeneScaffold,62 ensemblGeneScaffold,70 ensemblGeneScaffold,84 ensemblGeneScaffold,101 ensemblGeneScaffold,130 ensgene.txt.gz ensGene,88 enter chainMm10,361 chainNetMm10,364 netMm10,361 entered mrna,197 mrna,207 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 erieur1 ensGene,80 erieur1.fa windowmaskerSdust,62 windowmaskerSdust,71 ermolaeva xenoRefGene,327 especially mrna,98 est mrna,9 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 ensemblGeneScaffold,90 ensemblGeneScaffold,127 xenoRefGene,337 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 every chainMm10,270 chainNetMm10,273 netMm10,270 evolution chainMm10,1050 chainNetMm10,1053 netMm10,1050 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 ew mrna,473 example mrna,129 mrna,182 rmsk,256 exclude mrna,77 mrna,282 mrna,288 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 exist chainMm10,400 chainNetMm10,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 netMm10,400 exon augustusGene,86 exons chainMm10,48 chainNetMm10,51 genscan,44 netMm10,48 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 explanation gc5Base,66 quality,79 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 expressed mrna,137 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extracted nestedRepeats,23 f chainMm10,1023 chainNetMm10,1026 gold,154 netMm10,1023 xenoRefGene,324 facilitate genscan,106 factor mrna,174 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 rmsk,321 farrell xenoRefGene,329 feature chainMm10,241 chainNetMm10,244 genscan,129 mrna,332 netMm10,241 xenoRefGene,145 xenoRefGene,178 features xenoRefGene,81 fed chainMm10,610 chainNetMm10,613 netMm10,610 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,50 gap,66 gold,49 gold,65 windowmaskerSdust,77 files ensGene,78 fill chainMm10,841 chainMm10,874 chainNetMm10,844 chainNetMm10,877 netMm10,841 netMm10,874 filled chainMm10,409 chainMm10,428 chainMm10,823 chainMm10,896 chainNetMm10,412 chainNetMm10,431 chainNetMm10,826 chainNetMm10,899 netMm10,409 netMm10,428 netMm10,823 netMm10,896 filter chainMm10,373 chainNetMm10,376 genscan,82 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netMm10,373 filtered mrna,284 filtering mrna,223 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 find chainMm10,653 chainNetMm10,656 netMm10,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainMm10,280 chainNetMm10,283 netMm10,280 finished gold,156 first chainMm10,781 chainNetMm10,784 netMm10,781 fish augustusGene,201 fit chainMm10,801 chainNetMm10,804 nestedRepeats,175 netMm10,801 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainMm10,662 chainNetMm10,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,119 genscan,81 netMm10,662 windowmaskerSdust,56 follows genscan,67 mrna,30 xenoRefGene,47 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainMm10,254 chainMm10,269 chainMm10,279 chainMm10,286 chainMm10,486 chainNetMm10,257 chainNetMm10,272 chainNetMm10,282 chainNetMm10,289 chainNetMm10,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 ensemblGeneScaffold,76 ensemblGeneScaffold,102 gc5Base,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netMm10,254 netMm10,269 netMm10,279 netMm10,286 netMm10,486 quality,77 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 format chainMm10,601 chainNetMm10,604 ensGene,77 ensGene,97 gap,62 gold,61 netMm10,601 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainMm10,435 chainNetMm10,438 netMm10,435 found augustusGene,100 ensGene,139 gold,137 mrna,412 four chainMm10,503 chainNetMm10,506 netMm10,503 fragment gap,124 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 from augustusGene,19 chainMm10,173 chainMm10,298 chainMm10,555 chainMm10,577 chainMm10,758 chainMm10,931 chainMm10,963 chainNetMm10,176 chainNetMm10,301 chainNetMm10,558 chainNetMm10,580 chainNetMm10,761 chainNetMm10,934 chainNetMm10,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 ensemblGeneScaffold,68 gap,47 genscan,15 gold,3 gold,46 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netMm10,173 netMm10,298 netMm10,555 netMm10,577 netMm10,758 netMm10,931 netMm10,963 rmsk,86 windowmaskerSdust,41 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainMm10,235 chainMm10,379 chainNetMm10,238 chainNetMm10,382 nestedRepeats,118 netMm10,235 netMm10,379 rmsk,140 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 ensemblGeneScaffold,114 gc5Base,20 microsat,115 simpleRepeat,75 g-31-125100-114 chainMm10,670 chainNetMm10,673 netMm10,670 gambiae augustusGene,219 gap chainMm10,76 chainMm10,86 chainMm10,185 chainMm10,472 chainMm10,484 chainMm10,507 chainMm10,525 chainMm10,540 chainMm10,557 chainMm10,694 chainMm10,825 chainNetMm10,79 chainNetMm10,89 chainNetMm10,188 chainNetMm10,475 chainNetMm10,487 chainNetMm10,510 chainNetMm10,528 chainNetMm10,543 chainNetMm10,560 chainNetMm10,697 chainNetMm10,828 gap,1 gap,2 gap,90 gap,101 gap,114 mrna,366 netMm10,76 netMm10,86 netMm10,185 netMm10,472 netMm10,484 netMm10,507 netMm10,525 netMm10,540 netMm10,557 netMm10,694 netMm10,825 gapless chainMm10,637 chainNetMm10,640 netMm10,637 gaps chainMm10,82 chainMm10,93 chainMm10,104 chainMm10,138 chainMm10,162 chainMm10,207 chainMm10,218 chainMm10,399 chainMm10,421 chainMm10,448 chainMm10,880 chainMm10,886 chainNetMm10,85 chainNetMm10,96 chainNetMm10,107 chainNetMm10,141 chainNetMm10,165 chainNetMm10,210 chainNetMm10,221 chainNetMm10,402 chainNetMm10,424 chainNetMm10,451 chainNetMm10,883 chainNetMm10,889 gap,12 gap,42 gap,67 gap,123 gap,125 gold,95 netMm10,82 netMm10,93 netMm10,104 netMm10,138 netMm10,162 netMm10,207 netMm10,218 netMm10,399 netMm10,421 netMm10,448 netMm10,880 netMm10,886 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 genbank mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 ensemblGeneScaffold,4 ensemblGeneScaffold,18 ensemblGeneScaffold,41 ensemblGeneScaffold,57 ensemblGeneScaffold,85 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-rich gc5Base,36 genepred ensGene,76 generally rmsk,72 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 ensemblGeneScaffold,60 nestedRepeats,282 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 genscan,2 genscan,6 genscan,59 simpleRepeat,41 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainMm10,19 chainMm10,73 chainMm10,202 chainMm10,275 chainMm10,288 chainMm10,779 chainMm10,1100 chainNetMm10,22 chainNetMm10,76 chainNetMm10,205 chainNetMm10,278 chainNetMm10,291 chainNetMm10,782 chainNetMm10,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 ensemblGeneScaffold,131 gap,18 gap,20 gap,128 gold,20 gold,22 gold,150 mrna,23 mrna,391 mrna,521 nestedRepeats,405 netMm10,19 netMm10,73 netMm10,202 netMm10,275 netMm10,288 netMm10,779 netMm10,1100 rmsk,428 xenoRefGene,223 xenoRefGene,306 genomes chainMm10,25 chainMm10,582 chainMm10,1062 chainNetMm10,28 chainNetMm10,585 chainNetMm10,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netMm10,25 netMm10,582 netMm10,1062 rmsk,392 rmsk,406 windowmaskerSdust,105 xenoRefGene,375 genomic chainMm10,491 chainMm10,1014 chainMm10,1030 chainNetMm10,494 chainNetMm10,1017 chainNetMm10,1033 genscan,92 genscan,218 mrna,343 mrna,433 netMm10,491 netMm10,1014 netMm10,1030 windowmaskerSdust,3 xenoRefGene,162 xenoRefGene,273 genomics chainMm10,11 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netMm10,11 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 gi gold,159 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 go genscan,113 mrna,351 mrna,374 xenoRefGene,179 gold gold,90 gold,104 gr xenoRefGene,320 graph gc5Base,59 gc5Base,78 quality,73 graphical chainMm10,438 chainNetMm10,441 gold,129 netMm10,438 quality,100 rmsk,211 gray ensemblGeneScaffold,34 ensemblGeneScaffold,35 grcm38 chainMm10,6 chainMm10,68 chainMm10,302 chainNetMm10,7 chainNetMm10,71 chainNetMm10,305 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 group augustusGene,198 augustusGene,235 chainMm10,629 chainNetMm10,632 netMm10,629 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 gtf ensGene,96 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5Base,21 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainMm10,933 chainMm10,1090 chainNetMm10,936 chainNetMm10,1093 netMm10,933 netMm10,1090 harris chainMm10,1007 chainNetMm10,1010 netMm10,1007 hart xenoRefGene,331 has mrna,60 nestedRepeats,246 xenoRefGene,66 haussler augustusGene,292 chainMm10,968 chainMm10,1048 chainMm10,1092 chainNetMm10,971 chainNetMm10,1051 chainNetMm10,1095 netMm10,968 netMm10,1048 netMm10,1092 have chainMm10,567 chainNetMm10,570 nestedRepeats,88 netMm10,567 rmsk,69 rmsk,108 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,406 mrna,415 xenoRefGene,246 xenoRefGene,255 hedgehog chainMm10,72 chainMm10,98 chainMm10,155 chainMm10,201 chainMm10,267 chainMm10,274 chainMm10,573 chainMm10,625 chainNetMm10,75 chainNetMm10,101 chainNetMm10,158 chainNetMm10,204 chainNetMm10,270 chainNetMm10,277 chainNetMm10,576 chainNetMm10,628 gap,17 gold,19 mrna,1 mrna,3 mrna,17 mrna,385 netMm10,72 netMm10,98 netMm10,155 netMm10,201 netMm10,267 netMm10,274 netMm10,573 netMm10,625 quality,3 quality,94 xenoRefGene,23 xenoRefGene,222 height quality,27 heights quality,48 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5Base,61 quality,75 helpful mrna,88 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here rmsk,127 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 hiatt xenoRefGene,321 hidden augustusGene,324 hide xenoRefGene,190 hierarchy chainMm10,816 chainNetMm10,819 netMm10,816 high gc5Base,29 higher chainMm10,848 chainNetMm10,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netMm10,848 rmsk,230 higher-level chainMm10,865 chainNetMm10,868 netMm10,865 higher-scoring chainMm10,809 chainMm10,828 chainNetMm10,812 chainNetMm10,831 netMm10,809 netMm10,828 highest mrna,408 xenoRefGene,248 highest-scoring chainMm10,390 chainMm10,775 chainNetMm10,393 chainNetMm10,778 netMm10,390 netMm10,775 highlight gc5Base,49 mrna,279 quality,64 highlighted mrna,249 mrna,267 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainMm10,1044 chainNetMm10,1047 netMm10,1044 hiram gc5Base,82 quality,106 his chainMm10,942 chainNetMm10,945 netMm10,942 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainMm10,921 chainNetMm10,924 netMm10,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainMm10,876 chainMm10,893 chainNetMm10,879 chainNetMm10,896 netMm10,876 netMm10,893 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 rmsk,355 hubbard ensGene,44 ensGene,168 ensemblGeneScaffold,89 ensemblGeneScaffold,107 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 human augustusGene,205 augustusGene,210 augustusGene,276 chainMm10,1061 chainNetMm10,1064 genscan,217 nestedRepeats,404 netMm10,1061 rmsk,427 human-mouse chainMm10,1096 chainNetMm10,1099 netMm10,1096 i mrna,467 mrna,491 id nestedRepeats,10 nestedRepeats,106 identified chainMm10,937 chainNetMm10,940 netMm10,937 xenoRefGene,252 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 if gap,76 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 xenoRefGene,203 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 improve augustusGene,302 improved chainMm10,1010 chainNetMm10,1013 netMm10,1010 in augustusGene,101 chainMm10,31 chainMm10,94 chainMm10,114 chainMm10,146 chainMm10,153 chainMm10,167 chainMm10,186 chainMm10,189 chainMm10,228 chainMm10,249 chainMm10,294 chainMm10,327 chainMm10,357 chainMm10,369 chainMm10,378 chainMm10,396 chainMm10,401 chainMm10,410 chainMm10,422 chainMm10,436 chainMm10,478 chainMm10,495 chainMm10,526 chainMm10,544 chainMm10,558 chainMm10,593 chainMm10,689 chainMm10,777 chainMm10,818 chainMm10,826 chainMm10,842 chainMm10,875 chainMm10,887 chainMm10,1057 chainNetMm10,34 chainNetMm10,97 chainNetMm10,117 chainNetMm10,149 chainNetMm10,156 chainNetMm10,170 chainNetMm10,189 chainNetMm10,192 chainNetMm10,231 chainNetMm10,252 chainNetMm10,297 chainNetMm10,330 chainNetMm10,360 chainNetMm10,372 chainNetMm10,381 chainNetMm10,399 chainNetMm10,404 chainNetMm10,413 chainNetMm10,425 chainNetMm10,439 chainNetMm10,481 chainNetMm10,498 chainNetMm10,529 chainNetMm10,547 chainNetMm10,561 chainNetMm10,596 chainNetMm10,692 chainNetMm10,780 chainNetMm10,821 chainNetMm10,829 chainNetMm10,845 chainNetMm10,878 chainNetMm10,890 chainNetMm10,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 ensemblGeneScaffold,31 ensemblGeneScaffold,47 ensemblGeneScaffold,83 ensemblGeneScaffold,93 gap,13 gap,25 gap,43 gap,73 gc5Base,5 gc5Base,26 gc5Base,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,27 gold,66 gold,127 gold,138 gold,146 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netMm10,31 netMm10,94 netMm10,114 netMm10,146 netMm10,153 netMm10,167 netMm10,186 netMm10,189 netMm10,228 netMm10,249 netMm10,294 netMm10,327 netMm10,357 netMm10,369 netMm10,378 netMm10,396 netMm10,401 netMm10,410 netMm10,422 netMm10,436 netMm10,478 netMm10,495 netMm10,526 netMm10,544 netMm10,558 netMm10,593 netMm10,689 netMm10,777 netMm10,818 netMm10,826 netMm10,842 netMm10,875 netMm10,887 netMm10,1057 quality,23 quality,58 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 windowmaskerSdust,27 xenoRefGene,241 include mrna,76 mrna,281 mrna,305 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes rmsk,198 including rmsk,188 indels microsat,74 indicate chainMm10,137 chainMm10,243 chainNetMm10,140 chainNetMm10,246 ensemblGeneScaffold,37 mrna,49 nestedRepeats,153 netMm10,137 netMm10,243 indicates quality,34 xenoRefGene,58 individual chainMm10,240 chainMm10,493 chainNetMm10,243 chainNetMm10,496 netMm10,240 netMm10,493 information augustusGene,36 chainMm10,456 chainMm10,469 chainMm10,475 chainMm10,843 chainNetMm10,459 chainNetMm10,472 chainNetMm10,478 chainNetMm10,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 gap,34 gc5Base,55 genscan,51 genscan,126 gold,36 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netMm10,456 netMm10,469 netMm10,475 netMm10,843 quality,70 rmsk,89 rmsk,324 simpleRepeat,58 xenoRefGene,175 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input windowmaskerSdust,61 windowmaskerSdust,70 inserted chainMm10,569 chainMm10,899 chainNetMm10,572 chainNetMm10,902 netMm10,569 netMm10,899 insertion chainMm10,152 chainNetMm10,155 mrna,378 netMm10,152 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 instead xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 intergenic genscan,47 international mrna,452 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainMm10,599 chainMm10,611 chainMm10,627 chainMm10,802 chainNetMm10,602 chainNetMm10,614 chainNetMm10,630 chainNetMm10,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,198 netMm10,599 netMm10,611 netMm10,627 netMm10,802 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 introns chainMm10,56 chainNetMm10,59 genscan,45 netMm10,56 inv chainMm10,531 chainNetMm10,534 netMm10,531 inversions chainMm10,110 chainMm10,174 chainNetMm10,113 chainNetMm10,177 netMm10,110 netMm10,174 inverted chainMm10,861 chainNetMm10,864 netMm10,861 involve chainMm10,164 chainNetMm10,167 netMm10,164 is chainMm10,277 chainMm10,297 chainMm10,476 chainNetMm10,280 chainNetMm10,300 chainNetMm10,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 ensemblGeneScaffold,66 gap,46 gap,91 gap,98 gap,106 gc5Base,32 gold,45 gold,119 gold,125 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netMm10,277 netMm10,297 netMm10,476 rmsk,95 rmsk,360 simpleRepeat,28 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 issue mrna,482 mrna,508 xenoRefGene,353 xenoRefGene,387 it chainMm10,89 chainMm10,276 chainMm10,530 chainMm10,542 chainNetMm10,92 chainNetMm10,279 chainNetMm10,533 chainNetMm10,545 gap,97 genscan,143 netMm10,89 netMm10,276 netMm10,530 netMm10,542 item nestedRepeats,197 xenoRefGene,75 items chainMm10,494 chainNetMm10,497 ensemblGeneScaffold,28 ensemblGeneScaffold,36 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netMm10,494 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 ensemblGeneScaffold,122 genscan,220 mrna,471 mrna,495 nestedRepeats,341 rmsk,364 xenoRefGene,332 jan chainMm10,1103 chainNetMm10,1106 ensGene,199 ensemblGeneScaffold,138 microsat,129 mrna,479 mrna,504 netMm10,1103 simpleRepeat,89 windowmaskerSdust,108 xenoRefGene,350 xenoRefGene,383 jim chainMm10,959 chainMm10,986 chainMm10,1004 chainNetMm10,962 chainNetMm10,989 chainNetMm10,1007 netMm10,959 netMm10,986 netMm10,1004 joined chainMm10,122 chainNetMm10,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netMm10,122 journal nestedRepeats,349 rmsk,372 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 june gap,15 gold,17 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 k augustusGene,268 mrna,465 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,466 mrna,490 kasif genscan,193 kd xenoRefGene,318 xenoRefGene,360 kd-tree chainMm10,633 chainNetMm10,636 netMm10,633 kd-trees chainMm10,651 chainNetMm10,654 netMm10,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 kent chainMm10,960 chainMm10,987 chainMm10,1005 chainMm10,1040 chainMm10,1082 chainNetMm10,963 chainNetMm10,990 chainNetMm10,1008 chainNetMm10,1043 chainNetMm10,1085 mrna,514 netMm10,960 netMm10,987 netMm10,1005 netMm10,1040 netMm10,1082 xenoRefGene,300 kept mrna,436 xenoRefGene,276 km xenoRefGene,336 known chainMm10,910 chainNetMm10,913 gold,121 netMm10,910 xenoRefGene,14 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 ensemblGeneScaffold,118 lab augustusGene,252 label genscan,98 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 xenoRefGene,104 labels nestedRepeats,161 xenoRefGene,76 landrum xenoRefGene,333 large quality,45 largely chainMm10,141 chainNetMm10,144 netMm10,141 largest chainMm10,389 chainNetMm10,392 netMm10,389 lastz chainMm10,586 chainMm10,759 chainMm10,908 chainNetMm10,589 chainNetMm10,762 chainNetMm10,911 netMm10,586 netMm10,759 netMm10,908 lavtoaxt chainMm10,604 chainNetMm10,607 netMm10,604 least microsat,29 microsat,78 mrna,427 xenoRefGene,267 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less xenoRefGene,231 level chainMm10,384 chainMm10,418 chainMm10,423 chainMm10,430 chainMm10,488 chainMm10,515 chainMm10,528 chainMm10,560 chainNetMm10,387 chainNetMm10,421 chainNetMm10,426 chainNetMm10,433 chainNetMm10,491 chainNetMm10,518 chainNetMm10,531 chainNetMm10,563 mrna,419 netMm10,384 netMm10,418 netMm10,423 netMm10,430 netMm10,488 netMm10,515 netMm10,528 netMm10,560 rmsk,205 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 xenoRefGene,69 lighter rmsk,237 like chainMm10,47 chainMm10,55 chainNetMm10,50 chainNetMm10,58 ensGene,148 netMm10,47 netMm10,55 likely augustusGene,111 microsat,17 line chainMm10,466 chainNetMm10,469 gap,105 gold,124 nestedRepeats,151 netMm10,466 rmsk,165 line-up chainMm10,533 chainNetMm10,536 netMm10,533 line-ups chainMm10,518 chainNetMm10,521 netMm10,518 lineage-specific chainMm10,934 chainNetMm10,937 netMm10,934 linear chainMm10,693 chainNetMm10,696 ensemblGeneScaffold,48 netMm10,693 lineargap chainMm10,699 chainNetMm10,702 netMm10,699 lines chainMm10,129 chainMm10,136 chainMm10,158 chainMm10,446 chainNetMm10,132 chainNetMm10,139 chainNetMm10,161 chainNetMm10,449 nestedRepeats,131 netMm10,129 netMm10,136 netMm10,158 netMm10,446 link gc5Base,63 quality,76 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 lipman mrna,468 mrna,492 list mrna,155 listed ensGene,49 loaded windowmaskerSdust,79 local chainMm10,109 chainMm10,180 chainNetMm10,112 chainNetMm10,183 ensGene,73 nestedRepeats,98 netMm10,109 netMm10,180 located simpleRepeat,21 location chainMm10,248 chainNetMm10,251 netMm10,248 locations gap,3 logic mrna,233 long rmsk,161 rmsk,166 longer chainMm10,81 chainNetMm10,84 netMm10,81 longest chainMm10,511 chainNetMm10,514 netMm10,511 look chainMm10,46 chainNetMm10,49 netMm10,46 low nestedRepeats,39 rmsk,29 rmsk,181 lower chainMm10,487 chainNetMm10,490 netMm10,487 lower-level chainMm10,850 chainMm10,856 chainNetMm10,853 chainNetMm10,859 netMm10,850 netMm10,856 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,463 made rmsk,110 maglott xenoRefGene,363 make gold,75 rmsk,123 makedb rmsk,131 mammalian nestedRepeats,368 nestedRepeats,382 rmsk,391 rmsk,405 xenoRefGene,343 many chainMm10,397 chainNetMm10,400 mrna,90 netMm10,397 map chainMm10,325 chainNetMm10,328 ensemblGeneScaffold,46 netMm10,325 mapped augustusGene,298 nestedRepeats,233 mapping cytoBandIdeo,7 ensemblGeneScaffold,7 ensemblGeneScaffold,15 gap,4 gc5Base,8 gold,5 quality,7 mar augustusGene,309 mario augustusGene,102 augustusGene,283 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainMm10,253 chainMm10,512 chainMm10,550 chainNetMm10,256 chainNetMm10,515 chainNetMm10,553 mrna,243 mrna,258 mrna,299 mrna,317 netMm10,253 netMm10,512 netMm10,550 matches mrna,50 matching chainMm10,256 chainNetMm10,259 netMm10,256 matrix chainMm10,663 chainMm10,695 chainNetMm10,666 chainNetMm10,698 netMm10,663 netMm10,695 maximally chainMm10,655 chainNetMm10,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netMm10,655 maxtracks augustusGene,139 may chainMm10,171 chainMm10,426 chainNetMm10,174 chainNetMm10,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5Base,40 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netMm10,171 netMm10,426 quality,55 rmsk,297 rmsk,307 simpleRepeat,43 mcgarvey xenoRefGene,335 medium chainMm10,700 chainNetMm10,703 netMm10,700 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu xenoRefGene,172 method ensGene,120 methods augustusGene,46 chainMm10,562 chainMm10,763 chainNetMm10,565 chainNetMm10,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 ensemblGeneScaffold,63 ensemblGeneScaffold,81 genscan,130 genscan,197 microsat,45 mrna,383 nestedRepeats,244 netMm10,562 netMm10,763 rmsk,286 simpleRepeat,55 windowmaskerSdust,46 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainMm10,928 chainMm10,965 chainMm10,1026 chainMm10,1046 chainMm10,1094 chainNetMm10,931 chainNetMm10,968 chainNetMm10,1029 chainNetMm10,1049 chainNetMm10,1097 netMm10,928 netMm10,965 netMm10,1026 netMm10,1046 netMm10,1094 minexonintronprob augustusGene,135 minimum chainMm10,676 chainNetMm10,679 netMm10,676 minmeanexonintronprob augustusGene,137 minmei chainMm10,920 chainNetMm10,923 netMm10,920 mismatch rmsk,218 mj xenoRefGene,334 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,303 chainNetMm10,8 chainNetMm10,72 chainNetMm10,306 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,303 mode chainMm10,381 chainNetMm10,384 gold,68 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netMm10,381 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modes chainMm10,238 chainNetMm10,241 netMm10,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modified rmsk,57 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 more augustusGene,35 chainMm10,160 chainMm10,220 chainNetMm10,163 chainNetMm10,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 genscan,50 genscan,125 genscan,163 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netMm10,160 netMm10,220 rmsk,323 simpleRepeat,57 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 mouse chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,96 chainMm10,148 chainMm10,266 chainMm10,291 chainMm10,572 chainMm10,620 chainMm10,1059 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,99 chainNetMm10,151 chainNetMm10,269 chainNetMm10,294 chainNetMm10,575 chainNetMm10,623 chainNetMm10,1062 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netMm10,1 netMm10,3 netMm10,65 netMm10,96 netMm10,148 netMm10,266 netMm10,291 netMm10,572 netMm10,620 netMm10,1059 mrna mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 much chainMm10,877 chainMm10,894 chainNetMm10,880 chainNetMm10,897 nestedRepeats,210 netMm10,877 netMm10,894 multiple chainMm10,192 chainNetMm10,195 mrna,203 mrna,402 netMm10,192 xenoRefGene,242 mutation chainMm10,181 chainNetMm10,184 netMm10,181 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 ensemblGeneScaffold,71 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 name chainMm10,363 chainNetMm10,366 mrna,144 nestedRepeats,136 netMm10,363 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainMm10,242 chainNetMm10,245 netMm10,242 xenoRefGene,129 native augustusGene,295 natl chainMm10,1064 chainNetMm10,1067 netMm10,1064 natural chainMm10,815 chainNetMm10,818 netMm10,815 nbsp chainMm10,666 chainNetMm10,669 netMm10,666 ncbi gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 necessary chainMm10,799 chainNetMm10,802 netMm10,799 nematodes augustusGene,211 net chainMm10,34 chainMm10,258 chainMm10,261 chainMm10,376 chainMm10,753 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,261 chainNetMm10,264 chainNetMm10,379 chainNetMm10,756 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netMm10,2 netMm10,9 netMm10,34 netMm10,258 netMm10,261 netMm10,376 netMm10,753 netclass chainMm10,869 chainMm10,992 chainNetMm10,872 chainNetMm10,995 netMm10,869 netMm10,992 nets chainMm10,979 chainNetMm10,982 netMm10,979 netsyntenic chainMm10,837 chainMm10,990 chainNetMm10,840 chainNetMm10,993 netMm10,837 netMm10,990 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainMm10,342 chainMm10,371 chainNetMm10,345 chainNetMm10,374 netMm10,342 netMm10,371 nig augustusGene,270 no microsat,73 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainMm10,49 chainNetMm10,52 netMm10,49 non-coding augustusGene,75 xenoRefGene,191 non-hedgehog xenoRefGene,3 non-protein-coding xenoRefGene,17 xenoRefGene,199 non-redundant xenoRefGene,371 nonsyn chainMm10,548 chainNetMm10,551 netMm10,548 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainMm10,804 chainNetMm10,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 ensemblGeneScaffold,45 mrna,295 netMm10,804 rmsk,113 rmsk,313 note nestedRepeats,264 novo augustusGene,304 ns chainMm10,884 chainNetMm10,887 netMm10,884 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 ensemblGeneScaffold,134 microsat,125 mrna,475 mrna,500 simpleRepeat,85 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 o xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainMm10,17 chainMm10,64 chainMm10,179 chainMm10,199 chainMm10,251 chainMm10,272 chainMm10,354 chainMm10,364 chainMm10,482 chainMm10,502 chainMm10,635 chainMm10,640 chainMm10,658 chainMm10,678 chainMm10,878 chainMm10,953 chainMm10,975 chainMm10,999 chainMm10,1013 chainNetMm10,20 chainNetMm10,67 chainNetMm10,182 chainNetMm10,202 chainNetMm10,254 chainNetMm10,275 chainNetMm10,357 chainNetMm10,367 chainNetMm10,485 chainNetMm10,505 chainNetMm10,638 chainNetMm10,643 chainNetMm10,661 chainNetMm10,681 chainNetMm10,881 chainNetMm10,956 chainNetMm10,978 chainNetMm10,1002 chainNetMm10,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 ensemblGeneScaffold,16 ensemblGeneScaffold,39 ensemblGeneScaffold,79 gap,40 gap,63 gap,82 gap,88 gap,122 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netMm10,17 netMm10,64 netMm10,179 netMm10,199 netMm10,251 netMm10,272 netMm10,354 netMm10,364 netMm10,482 netMm10,502 netMm10,635 netMm10,640 netMm10,658 netMm10,678 netMm10,878 netMm10,953 netMm10,975 netMm10,999 netMm10,1013 quality,20 quality,31 quality,37 quality,61 quality,67 quality,80 quality,92 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainMm10,333 chainMm10,339 chainNetMm10,336 chainNetMm10,342 netMm10,333 netMm10,339 xenoRefGene,132 offers genscan,79 often chainMm10,209 chainMm10,221 chainNetMm10,212 chainNetMm10,224 netMm10,209 netMm10,221 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainMm10,321 chainMm10,347 chainMm10,450 chainMm10,464 chainMm10,514 chainMm10,519 chainMm10,534 chainMm10,765 chainNetMm10,324 chainNetMm10,350 chainNetMm10,453 chainNetMm10,467 chainNetMm10,517 chainNetMm10,522 chainNetMm10,537 chainNetMm10,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 gap,85 genscan,27 genscan,52 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netMm10,321 netMm10,347 netMm10,450 netMm10,464 netMm10,514 netMm10,519 netMm10,534 netMm10,765 rmsk,74 xenoRefGene,342 once mrna,209 one augustusGene,169 chainMm10,187 chainMm10,355 chainMm10,501 chainMm10,792 chainMm10,888 chainNetMm10,190 chainNetMm10,358 chainNetMm10,504 chainNetMm10,795 chainNetMm10,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 gold,155 mrna,116 mrna,227 mrna,260 netMm10,187 netMm10,355 netMm10,501 netMm10,792 netMm10,888 only chainMm10,351 chainNetMm10,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netMm10,351 xenoRefGene,208 xenoRefGene,253 onto ensemblGeneScaffold,21 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainMm10,546 chainNetMm10,549 netMm10,546 option augustusGene,167 augustusGene,187 genscan,94 mrna,350 xenoRefGene,112 xenoRefGene,164 optional xenoRefGene,142 options gc5Base,70 genscan,85 mrna,381 quality,83 or chainMm10,30 chainMm10,127 chainMm10,150 chainMm10,182 chainMm10,485 chainMm10,860 chainMm10,889 chainNetMm10,33 chainNetMm10,130 chainNetMm10,153 chainNetMm10,185 chainNetMm10,488 chainNetMm10,863 chainNetMm10,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 ensemblGeneScaffold,26 ensemblGeneScaffold,54 mrna,117 mrna,252 mrna,271 mrna,280 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netMm10,30 netMm10,127 netMm10,150 netMm10,182 netMm10,485 netMm10,860 netMm10,889 rmsk,251 rmsk,280 xenoRefGene,130 order ensemblGeneScaffold,49 gap,79 gold,110 organ mrna,141 mrna,147 organism chainMm10,330 chainMm10,360 chainNetMm10,333 chainNetMm10,363 netMm10,330 netMm10,360 organisms chainMm10,905 chainNetMm10,908 nestedRepeats,295 netMm10,905 rmsk,302 xenoRefGene,20 organizes chainMm10,614 chainNetMm10,617 netMm10,614 orientation chainMm10,547 chainNetMm10,550 cytoBandIdeo,6 gap,81 gold,112 netMm10,547 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologs chainMm10,284 chainNetMm10,287 netMm10,284 ostell mrna,470 mrna,494 other augustusGene,208 chainMm10,24 chainMm10,412 chainMm10,505 chainNetMm10,27 chainNetMm10,415 chainNetMm10,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 nestedRepeats,376 netMm10,24 netMm10,412 netMm10,505 rmsk,195 rmsk,399 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 rmsk,124 rmsk,129 out chainMm10,634 chainNetMm10,637 netMm10,634 quality,42 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 over chainMm10,195 chainMm10,649 chainNetMm10,198 chainNetMm10,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netMm10,195 netMm10,649 overlapping chainMm10,112 chainMm10,175 chainNetMm10,115 chainNetMm10,178 netMm10,112 netMm10,175 p genscan,205 nestedRepeats,329 rmsk,352 pac chainMm10,1033 chainNetMm10,1036 netMm10,1033 pack chainMm10,231 chainNetMm10,234 nestedRepeats,116 netMm10,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 genscan,78 genscan,123 mrna,56 mrna,361 mrna,382 rmsk,77 xenoRefGene,98 xenoRefGene,189 pages chainMm10,770 chainNetMm10,773 netMm10,770 pair gap,95 pairwise chainMm10,1011 chainMm10,1029 chainNetMm10,1014 chainNetMm10,1032 netMm10,1011 netMm10,1029 paralogs chainMm10,224 chainNetMm10,227 netMm10,224 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parenthesis gold,147 part chainMm10,271 chainNetMm10,274 netMm10,271 quality,91 particular augustusGene,234 chainMm10,197 chainNetMm10,200 netMm10,197 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainMm10,39 chainMm10,50 chainNetMm10,42 chainNetMm10,53 netMm10,39 netMm10,50 patterns augustusGene,56 pennsylvania chainMm10,916 chainMm10,1019 chainNetMm10,919 chainNetMm10,1022 netMm10,916 netMm10,1019 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5Base,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainMm10,1016 chainNetMm10,1019 netMm10,1016 place chainMm10,789 chainNetMm10,792 netMm10,789 placed chainMm10,831 chainNetMm10,834 netMm10,831 places mrna,403 xenoRefGene,243 please ensGene,41 ensGene,160 pmc chainMm10,1078 chainMm10,1109 chainNetMm10,1081 chainNetMm10,1112 ensGene,206 ensemblGeneScaffold,145 microsat,136 mrna,486 mrna,512 mrna,530 netMm10,1078 netMm10,1109 simpleRepeat,96 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,531 xenoRefGene,316 pmc208784 chainMm10,1079 chainNetMm10,1082 netMm10,1079 pmc308779 mrna,513 pmc3531190 mrna,487 pmc3965018 xenoRefGene,358 pmc430961 chainMm10,1110 chainNetMm10,1113 netMm10,1110 pmc539979 xenoRefGene,392 pmc99161 ensGene,207 ensemblGeneScaffold,146 pmid augustusGene,314 augustusGene,339 chainMm10,1038 chainMm10,1076 chainMm10,1107 chainNetMm10,1041 chainNetMm10,1079 chainNetMm10,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 ensemblGeneScaffold,143 genscan,229 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netMm10,1038 netMm10,1076 netMm10,1107 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 windowmaskerSdust,113 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 population microsat,44 position chainMm10,705 chainNetMm10,708 netMm10,705 quality,30 possible chainMm10,406 chainNetMm10,409 netMm10,406 possibly chainMm10,283 chainNetMm10,286 netMm10,283 simpleRepeat,18 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 xenoRefGene,68 prediction augustusGene,321 ensemblGeneScaffold,86 genscan,73 genscan,211 xenoRefGene,53 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared gc5Base,80 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5Base,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 previously chainMm10,909 chainNetMm10,912 netMm10,909 principal gap,120 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 proc chainMm10,1063 chainNetMm10,1066 netMm10,1063 procedures gap,22 gold,24 process chainMm10,813 chainNetMm10,816 netMm10,813 processed chainMm10,212 chainNetMm10,215 netMm10,212 produced mrna,442 xenoRefGene,281 program augustusGene,21 augustusGene,257 chainMm10,605 chainMm10,645 chainMm10,783 chainMm10,836 chainMm10,868 chainMm10,944 chainMm10,947 chainNetMm10,608 chainNetMm10,648 chainNetMm10,786 chainNetMm10,839 chainNetMm10,871 chainNetMm10,947 chainNetMm10,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netMm10,605 netMm10,645 netMm10,783 netMm10,836 netMm10,868 netMm10,944 netMm10,947 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 programmatic ensGene,99 programs chainMm10,993 chainNetMm10,996 netMm10,993 project ensGene,194 ensemblGeneScaffold,133 xenoRefGene,298 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 protein-coding augustusGene,73 xenoRefGene,15 xenoRefGene,197 proteins xenoRefGene,378 provided quality,89 provides gap,32 gold,34 providing augustusGene,254 ensGene,153 ensemblGeneScaffold,103 genscan,175 nestedRepeats,312 rmsk,335 provisional xenoRefGene,70 pruitt xenoRefGene,317 xenoRefGene,359 pseudogenes chainMm10,213 chainMm10,227 chainNetMm10,216 chainNetMm10,230 netMm10,213 netMm10,227 psl mrna,35 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 mrna,453 publicly nestedRepeats,275 pull-down xenoRefGene,171 purpose simpleRepeat,32 qgap chainMm10,717 chainNetMm10,720 netMm10,717 quality mrna,53 quality,1 quality,5 quality,12 quality,18 quality,36 quality,86 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 query rmsk,47 rmsk,61 quickly mrna,338 xenoRefGene,150 quite simpleRepeat,45 quot chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,101 chainMm10,103 chainMm10,230 chainMm10,232 chainMm10,234 chainMm10,236 chainMm10,338 chainMm10,340 chainMm10,679 chainMm10,681 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,104 chainNetMm10,106 chainNetMm10,233 chainNetMm10,235 chainNetMm10,237 chainNetMm10,239 chainNetMm10,341 chainNetMm10,343 chainNetMm10,682 chainNetMm10,684 gc5Base,58 gc5Base,62 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,101 netMm10,103 netMm10,230 netMm10,232 netMm10,234 netMm10,236 netMm10,338 netMm10,340 netMm10,679 netMm10,681 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainMm10,1043 chainMm10,1089 chainNetMm10,1046 chainNetMm10,1092 nestedRepeats,327 netMm10,1043 netMm10,1089 rmsk,350 windowmaskerSdust,99 r.s chainMm10,1008 chainNetMm10,1011 netMm10,1008 random augustusGene,119 range gap,135 nestedRepeats,227 nestedRepeats,236 quality,46 ranked chainMm10,780 chainNetMm10,783 netMm10,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 rc chainMm10,1091 chainNetMm10,1094 netMm10,1091 rmsk,200 read gap,94 rearrangement chainMm10,289 chainMm10,492 chainMm10,1056 chainNetMm10,292 chainNetMm10,495 chainNetMm10,1059 netMm10,289 netMm10,492 netMm10,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 record xenoRefGene,65 refer ensGene,42 ensemblGeneScaffold,87 genscan,144 reference xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references augustusGene,285 chainMm10,1006 chainNetMm10,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 ensemblGeneScaffold,95 ensemblGeneScaffold,106 genscan,152 genscan,179 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netMm10,1006 rmsk,102 rmsk,346 simpleRepeat,73 windowmaskerSdust,89 xenoRefGene,299 reflect quality,49 reflects rmsk,213 refseq xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 region chainMm10,198 chainMm10,395 chainNetMm10,201 chainNetMm10,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netMm10,198 netMm10,395 regions augustusGene,76 chainMm10,16 chainMm10,134 chainMm10,282 chainNetMm10,19 chainNetMm10,137 chainNetMm10,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netMm10,16 netMm10,134 netMm10,282 simpleRepeat,39 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 relationship chainMm10,846 chainNetMm10,849 netMm10,846 relative chainMm10,862 chainNetMm10,865 gap,78 gold,109 netMm10,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 relevant mrna,103 remaining chainMm10,685 chainNetMm10,688 netMm10,685 removed chainMm10,576 chainNetMm10,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netMm10,576 rmsk,279 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeating rmsk,2 repeatmasker chainMm10,943 chainNetMm10,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netMm10,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainMm10,935 chainNetMm10,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netMm10,935 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 rmsk,374 represent chainMm10,132 chainMm10,159 chainMm10,442 chainMm10,447 chainNetMm10,135 chainNetMm10,162 chainNetMm10,445 chainNetMm10,450 netMm10,132 netMm10,159 netMm10,442 netMm10,447 representation quality,98 represented gap,69 rmsk,49 representing gap,112 res chainMm10,1101 chainNetMm10,1104 ensGene,197 ensemblGeneScaffold,136 microsat,127 mrna,477 mrna,502 mrna,522 netMm10,1101 simpleRepeat,87 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 rmsk,90 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 result chainMm10,172 chainNetMm10,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netMm10,172 resulting chainMm10,595 chainNetMm10,598 netMm10,595 retroposons rmsk,173 review xenoRefGene,62 reviewed xenoRefGene,72 rna rmsk,186 rmsk,189 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rnas xenoRefGene,217 robert chainMm10,983 chainNetMm10,986 nestedRepeats,307 netMm10,983 rmsk,330 rolling rmsk,201 ross chainMm10,932 chainNetMm10,935 netMm10,932 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainMm10,648 chainNetMm10,651 netMm10,648 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainMm10,1051 chainMm10,1068 chainMm10,1081 chainNetMm10,1054 chainNetMm10,1071 chainNetMm10,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netMm10,1051 netMm10,1068 netMm10,1081 rmsk,18 rmsk,293 saccharomyces augustusGene,223 salzberg genscan,189 same chainMm10,521 chainMm10,536 chainNetMm10,524 chainNetMm10,539 nestedRepeats,143 netMm10,521 netMm10,536 sample augustusGene,133 sampling augustusGene,129 santa chainMm10,956 chainMm10,1001 chainNetMm10,959 chainNetMm10,1004 netMm10,956 netMm10,1001 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,472 scaffold ensemblGeneScaffold,5 ensemblGeneScaffold,19 ensemblGeneScaffold,42 ensemblGeneScaffold,55 gold,80 gold,118 scaffolds ensemblGeneScaffold,27 ensemblGeneScaffold,58 sch windowmaskerSdust,94 schwartz chainMm10,923 chainMm10,1080 chainNetMm10,926 chainNetMm10,1083 netMm10,923 netMm10,1080 sci chainMm10,1066 chainNetMm10,1069 netMm10,1066 science genscan,203 scientists mrna,457 xenoRefGene,290 score chainMm10,677 chainNetMm10,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netMm10,677 quality,19 scores quality,2 quality,6 quality,13 quality,52 quality,87 scoring chainMm10,77 chainMm10,87 chainMm10,656 chainMm10,673 chainMm10,1028 chainNetMm10,80 chainNetMm10,90 chainNetMm10,659 chainNetMm10,676 chainNetMm10,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netMm10,77 netMm10,87 netMm10,656 netMm10,673 netMm10,1028 scott chainMm10,922 chainNetMm10,925 netMm10,922 screens nestedRepeats,32 rmsk,22 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 section ensGene,53 ensemblGeneScaffold,96 genscan,153 nestedRepeats,67 rmsk,103 sections chainMm10,803 chainNetMm10,806 netMm10,803 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 rmsk,319 rmsk,393 simpleRepeat,63 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 ensemblGeneScaffold,38 select genscan,90 xenoRefGene,160 selected mrna,239 mrna,255 mrna,308 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sep chainMm10,1071 chainNetMm10,1074 nestedRepeats,356 netMm10,1071 rmsk,379 separated mrna,210 seq_region.txt ensemblGeneScaffold,75 sequence augustusGene,32 augustusGene,70 chainMm10,166 chainMm10,292 chainMm10,1031 chainNetMm10,169 chainNetMm10,295 chainNetMm10,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,54 gold,53 gold,157 mrna,344 mrna,434 mrna,447 mrna,454 netMm10,166 netMm10,292 netMm10,1031 rmsk,48 rmsk,62 windowmaskerSdust,17 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,30 xenoRefGene,345 sequencing chainMm10,885 chainNetMm10,888 cytoBandIdeo,9 ensemblGeneScaffold,9 gap,6 gc5Base,10 gold,7 netMm10,885 quality,4 quality,9 quality,17 server ensGene,144 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 several mrna,362 shade nestedRepeats,194 shaded mrna,48 nestedRepeats,182 shades nestedRepeats,202 shading nestedRepeats,240 rmsk,208 rmsk,239 xenoRefGene,57 short rmsk,153 shotgun gap,129 gold,151 should mrna,275 show xenoRefGene,123 shown chainMm10,41 chainMm10,54 chainNetMm10,44 chainNetMm10,57 gold,101 microsat,48 mrna,93 netMm10,41 netMm10,54 shows augustusGene,15 augustusGene,108 chainMm10,15 chainMm10,62 chainMm10,263 chainNetMm10,18 chainNetMm10,65 chainNetMm10,266 ensemblGeneScaffold,13 gap,10 gc5Base,16 genscan,13 gold,11 mrna,14 nestedRepeats,17 nestedRepeats,81 netMm10,15 netMm10,62 netMm10,263 quality,15 xenoRefGene,13 side gap,87 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainMm10,99 chainNetMm10,102 netMm10,99 since chainMm10,570 chainNetMm10,573 netMm10,570 sine rmsk,157 single chainMm10,126 chainMm10,135 chainMm10,619 chainMm10,624 chainNetMm10,129 chainNetMm10,138 chainNetMm10,622 chainNetMm10,627 mrna,398 nestedRepeats,178 netMm10,126 netMm10,135 netMm10,619 netMm10,624 xenoRefGene,238 single-lined chainMm10,206 chainNetMm10,209 netMm10,206 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 size gap,134 sm xenoRefGene,322 smallsize chainMm10,703 chainNetMm10,706 netMm10,703 smit chainMm10,940 chainMm10,1084 chainNetMm10,943 chainNetMm10,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netMm10,940 netMm10,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainMm10,434 chainNetMm10,437 netMm10,434 soft-masked rmsk,305 software nestedRepeats,255 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,101 nestedRepeats,207 rmsk,105 rmsk,268 sometimes simpleRepeat,50 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainMm10,772 chainNetMm10,775 netMm10,772 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 windowmaskerSdust,33 space mrna,213 spaces gold,99 span chainMm10,393 chainNetMm10,396 netMm10,393 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainMm10,116 chainMm10,169 chainMm10,188 chainMm10,891 chainNetMm10,119 chainNetMm10,172 chainNetMm10,191 chainNetMm10,894 netMm10,116 netMm10,169 netMm10,188 netMm10,891 species-specific augustusGene,156 specific gap,33 gold,35 mrna,140 simpleRepeat,53 specification gap,59 gold,58 splice augustusGene,53 genscan,156 splicing augustusGene,123 genscan,33 genscan,186 split chainMm10,574 chainNetMm10,577 netMm10,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srprna rmsk,194 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 state chainMm10,917 chainMm10,1020 chainNetMm10,920 chainNetMm10,1023 netMm10,917 netMm10,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 stefanie augustusGene,267 storage chainMm10,974 chainNetMm10,977 netMm10,974 strand chainMm10,246 chainNetMm10,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netMm10,246 structure augustusGene,113 structures augustusGene,164 genscan,215 studying chainMm10,287 chainNetMm10,290 netMm10,287 submitted mrna,449 submodel augustusGene,331 subsections chainMm10,638 chainNetMm10,641 netMm10,638 subset microsat,54 mrna,79 substantial chainMm10,165 chainNetMm10,168 netMm10,165 subtracks chainMm10,29 chainMm10,36 chainNetMm10,32 chainNetMm10,39 netMm10,29 netMm10,36 such chainMm10,852 chainNetMm10,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netMm10,852 suppl augustusGene,336 supported gap,92 symp chainMm10,1034 chainNetMm10,1037 netMm10,1034 syn chainMm10,517 chainNetMm10,520 netMm10,517 syntenic chainMm10,281 chainMm10,859 chainNetMm10,284 chainNetMm10,862 netMm10,281 netMm10,859 syntenically augustusGene,297 synteny chainMm10,32 chainNetMm10,35 netMm10,32 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainMm10,78 chainNetMm10,81 netMm10,78 systems chainMm10,88 chainNetMm10,91 netMm10,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 ensemblGeneScaffold,108 ensemblGeneScaffold,120 ensemblGeneScaffold,126 xenoRefGene,362 t-123-31-11491 chainMm10,671 chainNetMm10,674 netMm10,671 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 mrna,165 mrna,168 mrna,187 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 ensemblGeneScaffold,72 tablesize chainMm10,701 chainNetMm10,704 netMm10,701 taken xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task mrna,107 tatusova xenoRefGene,361 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,114 terminal rmsk,167 terms mrna,158 mrna,204 text mrna,121 mrna,161 mrna,201 tgap chainMm10,729 chainNetMm10,732 netMm10,729 than chainMm10,83 chainMm10,506 chainNetMm10,86 chainNetMm10,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,226 nestedRepeats,213 nestedRepeats,271 netMm10,83 netMm10,506 xenoRefGene,22 xenoRefGene,232 thank ensGene,150 thanks augustusGene,248 ensemblGeneScaffold,99 genscan,170 nestedRepeats,303 rmsk,326 that chainMm10,20 chainMm10,45 chainMm10,79 chainMm10,139 chainMm10,163 chainMm10,365 chainMm10,392 chainMm10,414 chainMm10,566 chainMm10,822 chainMm10,833 chainNetMm10,23 chainNetMm10,48 chainNetMm10,82 chainNetMm10,142 chainNetMm10,166 chainNetMm10,368 chainNetMm10,395 chainNetMm10,417 chainNetMm10,569 chainNetMm10,825 chainNetMm10,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 ensemblGeneScaffold,43 genscan,141 gold,74 gold,144 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netMm10,20 netMm10,45 netMm10,79 netMm10,139 netMm10,163 netMm10,365 netMm10,392 netMm10,414 netMm10,566 netMm10,822 netMm10,833 rmsk,42 rmsk,259 xenoRefGene,146 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,117 chainMm10,130 chainMm10,147 chainMm10,154 chainMm10,200 chainMm10,203 chainMm10,229 chainMm10,239 chainMm10,244 chainMm10,252 chainMm10,260 chainMm10,264 chainMm10,273 chainMm10,290 chainMm10,299 chainMm10,313 chainMm10,328 chainMm10,334 chainMm10,337 chainMm10,352 chainMm10,358 chainMm10,362 chainMm10,382 chainMm10,388 chainMm10,402 chainMm10,420 chainMm10,437 chainMm10,440 chainMm10,445 chainMm10,458 chainMm10,471 chainMm10,473 chainMm10,480 chainMm10,483 chainMm10,490 chainMm10,496 chainMm10,509 chainMm10,520 chainMm10,524 chainMm10,527 chainMm10,535 chainMm10,539 chainMm10,545 chainMm10,556 chainMm10,559 chainMm10,571 chainMm10,578 chainMm10,580 chainMm10,588 chainMm10,594 chainMm10,603 chainMm10,606 chainMm10,636 chainMm10,641 chainMm10,650 chainMm10,654 chainMm10,661 chainMm10,684 chainMm10,692 chainMm10,762 chainMm10,766 chainMm10,774 chainMm10,778 chainMm10,782 chainMm10,790 chainMm10,835 chainMm10,845 chainMm10,864 chainMm10,867 chainMm10,879 chainMm10,903 chainMm10,945 chainMm10,951 chainMm10,969 chainMm10,976 chainMm10,988 chainMm10,997 chainMm10,1018 chainMm10,1058 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,120 chainNetMm10,133 chainNetMm10,150 chainNetMm10,157 chainNetMm10,203 chainNetMm10,206 chainNetMm10,232 chainNetMm10,242 chainNetMm10,247 chainNetMm10,255 chainNetMm10,263 chainNetMm10,267 chainNetMm10,276 chainNetMm10,293 chainNetMm10,302 chainNetMm10,316 chainNetMm10,331 chainNetMm10,337 chainNetMm10,340 chainNetMm10,355 chainNetMm10,361 chainNetMm10,365 chainNetMm10,385 chainNetMm10,391 chainNetMm10,405 chainNetMm10,423 chainNetMm10,440 chainNetMm10,443 chainNetMm10,448 chainNetMm10,461 chainNetMm10,474 chainNetMm10,476 chainNetMm10,483 chainNetMm10,486 chainNetMm10,493 chainNetMm10,499 chainNetMm10,512 chainNetMm10,523 chainNetMm10,527 chainNetMm10,530 chainNetMm10,538 chainNetMm10,542 chainNetMm10,548 chainNetMm10,559 chainNetMm10,562 chainNetMm10,574 chainNetMm10,581 chainNetMm10,583 chainNetMm10,591 chainNetMm10,597 chainNetMm10,606 chainNetMm10,609 chainNetMm10,639 chainNetMm10,644 chainNetMm10,653 chainNetMm10,657 chainNetMm10,664 chainNetMm10,687 chainNetMm10,695 chainNetMm10,765 chainNetMm10,769 chainNetMm10,777 chainNetMm10,781 chainNetMm10,785 chainNetMm10,793 chainNetMm10,838 chainNetMm10,848 chainNetMm10,867 chainNetMm10,870 chainNetMm10,882 chainNetMm10,906 chainNetMm10,948 chainNetMm10,954 chainNetMm10,972 chainNetMm10,979 chainNetMm10,991 chainNetMm10,1000 chainNetMm10,1021 chainNetMm10,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 ensemblGeneScaffold,14 ensemblGeneScaffold,22 ensemblGeneScaffold,40 ensemblGeneScaffold,51 ensemblGeneScaffold,69 ensemblGeneScaffold,80 ensemblGeneScaffold,94 ensemblGeneScaffold,129 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gap,118 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,117 netMm10,130 netMm10,147 netMm10,154 netMm10,200 netMm10,203 netMm10,229 netMm10,239 netMm10,244 netMm10,252 netMm10,260 netMm10,264 netMm10,273 netMm10,290 netMm10,299 netMm10,313 netMm10,328 netMm10,334 netMm10,337 netMm10,352 netMm10,358 netMm10,362 netMm10,382 netMm10,388 netMm10,402 netMm10,420 netMm10,437 netMm10,440 netMm10,445 netMm10,458 netMm10,471 netMm10,473 netMm10,480 netMm10,483 netMm10,490 netMm10,496 netMm10,509 netMm10,520 netMm10,524 netMm10,527 netMm10,535 netMm10,539 netMm10,545 netMm10,556 netMm10,559 netMm10,571 netMm10,578 netMm10,580 netMm10,588 netMm10,594 netMm10,603 netMm10,606 netMm10,636 netMm10,641 netMm10,650 netMm10,654 netMm10,661 netMm10,684 netMm10,692 netMm10,762 netMm10,766 netMm10,774 netMm10,778 netMm10,782 netMm10,790 netMm10,835 netMm10,845 netMm10,864 netMm10,867 netMm10,879 netMm10,903 netMm10,945 netMm10,951 netMm10,969 netMm10,976 netMm10,988 netMm10,997 netMm10,1018 netMm10,1058 quality,11 quality,16 quality,24 quality,26 quality,32 quality,35 quality,38 quality,47 quality,50 quality,68 quality,72 quality,81 quality,85 quality,93 quality,96 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 them chainMm10,797 chainNetMm10,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netMm10,797 rmsk,318 then chainMm10,647 chainMm10,786 chainMm10,871 chainNetMm10,650 chainNetMm10,789 chainNetMm10,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netMm10,647 netMm10,786 netMm10,871 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 therefore gold,122 these augustusGene,95 augustusGene,190 chainMm10,52 chainMm10,100 chainMm10,407 chainMm10,659 chainNetMm10,55 chainNetMm10,103 chainNetMm10,410 chainNetMm10,662 ensGene,10 ensGene,154 ensemblGeneScaffold,56 microsat,24 nestedRepeats,262 nestedRepeats,266 netMm10,52 netMm10,100 netMm10,407 netMm10,659 rmsk,235 simpleRepeat,33 thesis chainMm10,1017 chainNetMm10,1020 netMm10,1017 they chainMm10,324 chainNetMm10,327 netMm10,324 thibaud-nissen xenoRefGene,323 thick chainMm10,43 chainNetMm10,46 netMm10,43 this augustusGene,13 augustusGene,106 augustusGene,224 chainMm10,13 chainMm10,170 chainMm10,295 chainMm10,394 chainMm10,690 chainMm10,812 chainNetMm10,16 chainNetMm10,173 chainNetMm10,298 chainNetMm10,397 chainNetMm10,693 chainNetMm10,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 ensemblGeneScaffold,11 ensemblGeneScaffold,64 ensemblGeneScaffold,104 gap,8 gap,36 gap,44 gap,74 gap,115 gc5Base,38 gc5Base,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netMm10,13 netMm10,170 netMm10,295 netMm10,394 netMm10,690 netMm10,812 quality,53 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those microsat,62 mrna,314 nestedRepeats,272 xenoRefGene,226 thousands chainMm10,250 chainNetMm10,253 netMm10,250 through gap,108 nestedRepeats,97 rmsk,309 xenoRefGene,88 time chainMm10,795 chainNetMm10,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netMm10,795 tissue mrna,150 mrna,185 mrna,200 tissues mrna,193 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainMm10,23 chainMm10,70 chainMm10,143 chainMm10,211 chainMm10,223 chainMm10,315 chainMm10,326 chainMm10,331 chainMm10,343 chainMm10,349 chainMm10,372 chainMm10,453 chainMm10,467 chainMm10,551 chainMm10,652 chainMm10,788 chainMm10,800 chainMm10,840 chainMm10,863 chainMm10,873 chainNetMm10,26 chainNetMm10,73 chainNetMm10,146 chainNetMm10,214 chainNetMm10,226 chainNetMm10,318 chainNetMm10,329 chainNetMm10,334 chainNetMm10,346 chainNetMm10,352 chainNetMm10,375 chainNetMm10,456 chainNetMm10,470 chainNetMm10,554 chainNetMm10,655 chainNetMm10,791 chainNetMm10,803 chainNetMm10,843 chainNetMm10,866 chainNetMm10,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 ensemblGeneScaffold,50 ensemblGeneScaffold,88 ensemblGeneScaffold,100 gc5Base,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netMm10,23 netMm10,70 netMm10,143 netMm10,211 netMm10,223 netMm10,315 netMm10,326 netMm10,331 netMm10,343 netMm10,349 netMm10,372 netMm10,453 netMm10,467 netMm10,551 netMm10,652 netMm10,788 netMm10,800 netMm10,840 netMm10,863 netMm10,873 quality,43 quality,63 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 windowmaskerSdust,47 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 together chainMm10,123 chainNetMm10,126 netMm10,123 tolerate chainMm10,92 chainNetMm10,95 netMm10,92 tool mrna,520 windowmaskerSdust,24 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 top chainMm10,508 chainNetMm10,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netMm10,508 xenoRefGene,93 top-level chainMm10,383 chainMm10,403 chainNetMm10,386 chainNetMm10,406 netMm10,383 netMm10,403 track augustusGene,14 augustusGene,107 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,119 chainMm10,259 chainMm10,262 chainMm10,310 chainMm10,345 chainMm10,377 chainMm10,564 chainMm10,691 chainMm10,754 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,122 chainNetMm10,262 chainNetMm10,265 chainNetMm10,313 chainNetMm10,348 chainNetMm10,380 chainNetMm10,567 chainNetMm10,694 chainNetMm10,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 ensemblGeneScaffold,12 ensemblGeneScaffold,65 gap,9 gap,75 gc5Base,15 gc5Base,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netMm10,14 netMm10,58 netMm10,61 netMm10,119 netMm10,259 netMm10,262 netMm10,310 netMm10,345 netMm10,377 netMm10,564 netMm10,691 netMm10,754 quality,14 quality,33 quality,54 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainMm10,768 chainNetMm10,771 ensGene,24 genscan,56 genscan,74 mrna,37 mrna,360 netMm10,768 xenoRefGene,54 traditional chainMm10,84 chainNetMm10,87 netMm10,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts augustusGene,124 xenoRefGene,376 translation augustusGene,57 translational genscan,29 transposable nestedRepeats,379 rmsk,402 transposons chainMm10,565 chainMm10,589 chainMm10,898 chainNetMm10,568 chainNetMm10,592 chainNetMm10,901 netMm10,565 netMm10,589 netMm10,898 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming chainMm10,796 chainNetMm10,799 netMm10,796 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainMm10,332 chainNetMm10,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netMm10,332 xenoRefGene,131 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainMm10,904 chainNetMm10,907 netMm10,904 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,145 mrna,112 mrna,142 types augustusGene,89 chainMm10,504 chainNetMm10,507 gap,121 gold,136 mrna,191 mrna,363 netMm10,504 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5Base,33 u chainMm10,1067 chainNetMm10,1070 netMm10,1067 ucsc mrna,444 nestedRepeats,245 xenoRefGene,283 undergone xenoRefGene,67 underlies genscan,142 underlying ensemblGeneScaffold,23 ensemblGeneScaffold,52 xenoRefGene,35 underneath chainMm10,832 chainNetMm10,835 netMm10,832 ungapped chainMm10,443 chainNetMm10,446 netMm10,443 university chainMm10,918 chainMm10,952 chainMm10,998 chainMm10,1021 chainNetMm10,921 chainNetMm10,955 chainNetMm10,1001 chainNetMm10,1024 netMm10,918 netMm10,952 netMm10,998 netMm10,1021 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainMm10,226 chainNetMm10,229 netMm10,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainMm10,184 chainNetMm10,187 netMm10,184 unsure rmsk,263 up gold,76 rmsk,146 update mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,341 updated xenoRefGene,39 use gold,87 mrna,109 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainMm10,293 chainMm10,665 chainMm10,696 chainMm10,787 chainMm10,839 chainMm10,872 chainNetMm10,296 chainNetMm10,668 chainNetMm10,699 chainNetMm10,790 chainNetMm10,842 chainNetMm10,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 ensemblGeneScaffold,82 genscan,159 gold,14 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netMm10,293 netMm10,665 netMm10,696 netMm10,787 netMm10,839 netMm10,872 rmsk,299 rmsk,341 useful chainMm10,278 chainMm10,477 chainNetMm10,281 chainNetMm10,480 microsat,20 netMm10,278 netMm10,477 user mrna,336 users xenoRefGene,148 uses rmsk,79 using augustusGene,294 chainMm10,74 chainMm10,602 chainMm10,761 chainNetMm10,77 chainNetMm10,605 chainNetMm10,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netMm10,74 netMm10,602 netMm10,761 rmsk,15 rmsk,290 xenoRefGene,224 ustat windowmaskerSdust,66 usually nestedRepeats,192 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 v ensGene,185 ensemblGeneScaffold,124 v3.1 augustusGene,7 valid mrna,157 validate xenoRefGene,151 validation genscan,107 value mrna,228 variation microsat,7 nestedRepeats,11 rmsk,6 simpleRepeat,8 windowmaskerSdust,9 variety gc5Base,45 quality,60 vb chainMm10,1025 chainNetMm10,1028 netMm10,1025 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 rmsk,58 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 view chainMm10,454 chainNetMm10,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,153 netMm10,454 viewed gold,79 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 w chainMm10,1027 chainMm10,1047 chainMm10,1095 chainNetMm10,1030 chainNetMm10,1050 chainNetMm10,1098 gold,148 netMm10,1027 netMm10,1047 netMm10,1095 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainMm10,646 chainMm10,664 chainMm10,785 chainMm10,830 chainMm10,838 chainMm10,858 chainMm10,870 chainMm10,895 chainMm10,913 chainMm10,948 chainNetMm10,649 chainNetMm10,667 chainNetMm10,788 chainNetMm10,833 chainNetMm10,841 chainNetMm10,861 chainNetMm10,873 chainNetMm10,898 chainNetMm10,916 chainNetMm10,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,411 mrna,441 netMm10,646 netMm10,664 netMm10,785 netMm10,830 netMm10,838 netMm10,858 netMm10,870 netMm10,895 netMm10,913 netMm10,948 rmsk,12 rmsk,262 simpleRepeat,68 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,251 xenoRefGene,280 ways gc5Base,47 quality,62 we ensGene,146 rmsk,122 webb chainMm10,927 chainMm10,964 chainNetMm10,930 chainNetMm10,967 netMm10,927 netMm10,964 weekly xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainMm10,575 chainMm10,583 chainMm10,590 chainMm10,597 chainMm10,609 chainMm10,682 chainMm10,756 chainMm10,936 chainMm10,980 chainMm10,994 chainNetMm10,578 chainNetMm10,586 chainNetMm10,593 chainNetMm10,600 chainNetMm10,612 chainNetMm10,685 chainNetMm10,759 chainNetMm10,939 chainNetMm10,983 chainNetMm10,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 ensemblGeneScaffold,59 gc5Base,79 mrna,387 mrna,435 netMm10,575 netMm10,583 netMm10,590 netMm10,597 netMm10,609 netMm10,682 netMm10,756 netMm10,936 netMm10,980 netMm10,994 quality,88 quality,103 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wheeler mrna,496 when augustusGene,188 augustusGene,238 chainMm10,405 chainNetMm10,408 mrna,89 mrna,99 mrna,396 netMm10,405 quality,40 xenoRefGene,236 where chainMm10,191 chainNetMm10,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,94 netMm10,191 whether chainMm10,854 chainNetMm10,857 netMm10,854 which augustusGene,159 augustusGene,227 chainMm10,322 chainMm10,613 chainMm10,819 chainNetMm10,325 chainNetMm10,616 chainNetMm10,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,176 nestedRepeats,31 nestedRepeats,87 netMm10,322 netMm10,613 netMm10,819 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 while chainMm10,214 chainNetMm10,217 netMm10,214 white gap,104 whole chainMm10,462 chainNetMm10,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gap,127 gold,149 netMm10,462 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,214 will mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5Base,7 gc5Base,28 wish mrna,178 xenoRefGene,205 with augustusGene,127 augustusGene,322 chainMm10,42 chainMm10,205 chainMm10,216 chainMm10,585 chainMm10,697 chainMm10,773 chainMm10,897 chainMm10,929 chainMm10,961 chainMm10,1098 chainNetMm10,45 chainNetMm10,208 chainNetMm10,219 chainNetMm10,588 chainNetMm10,700 chainNetMm10,776 chainNetMm10,900 chainNetMm10,932 chainNetMm10,964 chainNetMm10,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,52 gc5Base,35 gold,51 gold,141 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netMm10,42 netMm10,205 netMm10,216 netMm10,585 netMm10,697 netMm10,773 netMm10,897 netMm10,929 netMm10,961 netMm10,1098 rmsk,111 rmsk,225 simpleRepeat,52 windowmaskerSdust,54 xenoRefGene,227 xenoRefGene,271 within gold,116 mrna,82 mrna,420 simpleRepeat,37 xenoRefGene,82 xenoRefGene,260 wj chainMm10,1041 chainMm10,1083 chainNetMm10,1044 chainNetMm10,1086 mrna,515 netMm10,1041 netMm10,1083 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 worldwide mrna,458 xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 written genscan,19 microsat,109 quality,104 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 y ensGene,177 ensemblGeneScaffold,116 yap chainMm10,1024 chainNetMm10,1027 netMm10,1024 you mrna,177 rmsk,115 xenoRefGene,204 younger nestedRepeats,94 z chainMm10,1087 chainNetMm10,1090 netMm10,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainMm10,925 chainMm10,1086 chainNetMm10,928 chainNetMm10,1089 netMm10,925 netMm10,1086 zheng chainMm10,924 chainNetMm10,927 netMm10,924 zoomed quality,41 zoomed-in genscan,103