0 evaSnp,1082 evaSnp4,1123 evaSnp5,1123 nestedRepeats,237 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refGene,301 refSeqComposite,1269 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 est,705 intronEst,786 mrna,421 transMapEnsemblV5,224 transMapEnsemblV5,358 transMapEstV5,193 transMapEstV5,327 transMapRefSeqV5,193 transMapRefSeqV5,327 transMapRnaV5,193 transMapRnaV5,327 transMapV5,299 transMapV5,433 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 est,665 gap,141 gap,142 gap,144 gap,145 intronEst,746 tanDups,176 tanDups,189 tanDups,299 transMapV5,109 1 HLTOGAannotvHg38v1,239 augustusGene,310 chainHg38,385 chainHg38,516 chainHg38,706 chainHg38,1105 chainMm10,385 chainMm10,516 chainMm10,706 chainMm10,1105 chainNetHg38,388 chainNetHg38,519 chainNetHg38,709 chainNetHg38,1108 chainNetMm10,388 chainNetMm10,519 chainNetMm10,709 chainNetMm10,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 est,788 evaSnp,1201 evaSnp4,1246 evaSnp5,1246 genscan,227 intronEst,872 mrna,505 netHg38,385 netHg38,516 netHg38,706 netHg38,1105 netMm10,385 netMm10,516 netMm10,706 netMm10,1105 refGene,425 refSeqComposite,1812 tanDups,171 tanDups,188 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoMrna,496 xenoMrna,580 xenoRefGene,384 1.0 transMapEnsemblV5,366 transMapEstV5,335 transMapRefSeqV5,335 transMapRnaV5,335 transMapV5,441 10 gap,158 tanDups,211 uniprot,1928 10.1093 evaSnp,1158 evaSnp4,1203 evaSnp5,1203 100 augustusGene,134 chainHg38,1073 chainMm10,1073 chainNetHg38,1076 chainNetMm10,1076 microsat,70 nestedRepeats,230 netHg38,1073 netMm10,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainHg38,745 chainMm10,745 chainNetHg38,748 chainNetMm10,748 nestedRepeats,238 netHg38,745 netMm10,745 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,1824 100000000 evaSnp,1084 evaSnp4,1125 evaSnp5,1125 100k evaSnp,153 evaSnp4,153 evaSnp5,153 103-7 chainHg38,1106 chainMm10,1106 chainNetHg38,1109 chainNetMm10,1109 netHg38,1106 netMm10,1106 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainHg38,702 chainHg38,709 chainMm10,702 chainMm10,709 chainNetHg38,705 chainNetHg38,712 chainNetMm10,705 chainNetMm10,712 netHg38,702 netHg38,709 netMm10,702 netMm10,709 111 chainHg38,704 chainHg38,710 chainMm10,704 chainMm10,710 chainNetHg38,707 chainNetHg38,713 chainNetMm10,707 chainNetMm10,713 netHg38,704 netHg38,710 netMm10,704 netMm10,710 11484-9 chainHg38,1075 chainMm10,1075 chainNetHg38,1078 chainNetMm10,1078 netHg38,1075 netMm10,1075 115-26 chainHg38,1037 chainMm10,1037 chainNetHg38,1040 chainNetMm10,1040 netHg38,1037 netMm10,1037 11752248 ensGene,205 117900 chainHg38,726 chainHg38,738 chainMm10,726 chainMm10,738 chainNetHg38,729 chainNetHg38,741 chainNetMm10,729 chainNetMm10,741 netHg38,726 netHg38,738 netMm10,726 netMm10,738 118300 chainHg38,750 chainMm10,750 chainNetHg38,753 chainNetMm10,753 netHg38,750 netMm10,750 11928468 chainHg38,1039 chainMm10,1039 chainNetHg38,1042 chainNetMm10,1042 netHg38,1039 netMm10,1039 11932250 est,812 intronEst,896 mrna,529 refGene,355 refSeqComposite,1742 xenoMrna,604 xenoRefGene,314 12 est,808 intronEst,892 mrna,525 refGene,351 refSeqComposite,1738 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 xenoMrna,600 xenoRefGene,310 12111 chainHg38,712 chainMm10,712 chainNetHg38,715 chainNetMm10,715 netHg38,712 netMm10,712 12529312 chainHg38,1108 chainMm10,1108 chainNetHg38,1111 chainNetMm10,1111 netHg38,1108 netMm10,1108 127-163 genscan,206 13 chainHg38,1104 chainMm10,1104 chainNetHg38,1107 chainNetMm10,1107 netHg38,1104 netMm10,1104 1300 chainHg38,746 chainMm10,746 chainNetHg38,749 chainNetMm10,749 netHg38,746 netMm10,746 134-41 windowmaskerSdust,112 1430-2 evaSnp,1204 evaSnp4,1249 evaSnp5,1249 14500911 chainHg38,1077 chainMm10,1077 chainNetHg38,1080 chainNetMm10,1080 netHg38,1077 netMm10,1077 14534192 augustusGene,340 14681350 est,794 intronEst,878 mrna,511 xenoMrna,586 15 microsat,30 microsat,79 microsat,130 refGene,273 refSeqComposite,1241 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 15108278 uniprot,2051 152111 chainHg38,715 chainMm10,715 chainNetHg38,718 chainNetMm10,718 netHg38,715 netMm10,715 15608248 refGene,431 refSeqComposite,1818 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 1763-73 transMapEnsemblV5,749 transMapEstV5,718 transMapRefSeqV5,718 transMapRnaV5,718 transMapV5,824 17989246 transMapEnsemblV5,751 transMapEstV5,720 transMapRefSeqV5,720 transMapRnaV5,720 transMapV5,826 18085818 transMapEnsemblV5,817 transMapEstV5,786 transMapRefSeqV5,786 transMapRnaV5,786 transMapV5,892 18218656 augustusGene,315 transMapEnsemblV5,783 transMapEstV5,752 transMapRefSeqV5,752 transMapRnaV5,752 transMapV5,858 19 augustusGene,335 gap,137 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainHg38,419 chainHg38,424 chainHg38,707 chainMm10,419 chainMm10,424 chainMm10,707 chainNetHg38,422 chainNetHg38,427 chainNetHg38,710 chainNetMm10,422 chainNetMm10,427 chainNetMm10,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 gap,140 microsat,66 microsat,132 netHg38,419 netHg38,424 netHg38,707 netMm10,419 netMm10,424 netMm10,707 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 2.0 HLTOGAannotvHg38v1,103 20 chainHg38,1074 chainMm10,1074 chainNetHg38,1077 chainNetMm10,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netHg38,1074 netMm10,1074 tanDups,175 tanDups,298 transMapEnsemblV5,374 transMapEstV5,343 transMapRefSeqV5,343 transMapRnaV5,343 transMapV5,449 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainHg38,1036 chainMm10,1036 chainNetHg38,1039 chainNetMm10,1039 ensGene,47 ensGene,198 est,806 intronEst,890 mrna,523 netHg38,1036 netMm10,1036 refGene,349 refSeqComposite,1736 xenoMrna,598 xenoRefGene,308 2003 augustusGene,333 chainHg38,1070 chainHg38,1102 chainMm10,1070 chainMm10,1102 chainNetHg38,1073 chainNetHg38,1105 chainNetMm10,1073 chainNetMm10,1105 netHg38,1070 netHg38,1102 netMm10,1070 netMm10,1102 2004 est,786 intronEst,870 mrna,503 uniprot,2045 xenoMrna,578 2005 refGene,423 refSeqComposite,1810 xenoRefGene,382 2006 windowmaskerSdust,107 2007 chainHg38,1009 chainMm10,1009 chainNetHg38,1012 chainNetMm10,1012 netHg38,1009 netMm10,1009 transMapEnsemblV5,745 transMapEnsemblV5,811 transMapEstV5,714 transMapEstV5,780 transMapRefSeqV5,714 transMapRefSeqV5,780 transMapRnaV5,714 transMapRnaV5,780 transMapV5,820 transMapV5,886 2008 augustusGene,308 transMapEnsemblV5,776 transMapEstV5,745 transMapRefSeqV5,745 transMapRnaV5,745 transMapV5,851 2011 chainMm10,5 chainMm10,67 chainMm10,301 chainNetMm10,6 chainNetMm10,70 chainNetMm10,304 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netMm10,5 netMm10,67 netMm10,301 2012 uniprot,2000 2013 chainHg38,5 chainHg38,67 chainHg38,301 chainNetHg38,6 chainNetHg38,70 chainNetHg38,304 chainNetHg38Viewchain,4 chainNetHg38Viewnet,4 est,761 intronEst,845 mrna,478 netHg38,5 netHg38,67 netHg38,301 xenoMrna,553 2014 refGene,390 refSeqComposite,1777 xenoRefGene,349 2016 evaSnp,829 evaSnp,1199 evaSnp4,850 evaSnp4,1244 evaSnp5,850 evaSnp5,1244 2017 gap,16 gold,18 2021 evaSnp,1153 evaSnp4,1198 evaSnp5,1198 2022-02-24 evaSnp,671 2022-11-21 evaSnp4,689 2022_03 uniprot,1911 2023 HLTOGAannotvHg38v1,365 uniprot,1191 2023-9-7 evaSnp5,689 2111 chainHg38,711 chainMm10,711 chainNetHg38,714 chainNetMm10,714 netHg38,711 netMm10,711 217900 chainHg38,727 chainHg38,739 chainMm10,727 chainMm10,739 chainNetHg38,730 chainNetHg38,742 chainNetMm10,730 chainNetMm10,742 netHg38,727 netHg38,739 netMm10,727 netMm10,739 218300 chainHg38,751 chainMm10,751 chainNetHg38,754 chainNetMm10,754 netHg38,751 netMm10,751 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,716 transMapEstV5,685 transMapRefSeqV5,685 transMapRnaV5,685 transMapV5,791 22900 chainHg38,724 chainHg38,736 chainMm10,724 chainMm10,736 chainNetHg38,727 chainNetHg38,739 chainNetMm10,727 chainNetMm10,739 netHg38,724 netHg38,736 netMm10,724 netMm10,736 23 uniprot,2047 23193287 est,768 intronEst,852 mrna,485 xenoMrna,560 23300 chainHg38,748 chainMm10,748 chainNetHg38,751 chainNetMm10,751 netHg38,748 netMm10,748 24 augustusGene,311 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 24259432 refGene,397 refSeqComposite,1784 xenoRefGene,356 25 genscan,225 transMapV5,112 xenoMrna,503 xenoRefGene,268 250k evaSnp,165 evaSnp4,165 evaSnp5,165 252111 chainHg38,716 chainMm10,716 chainNetHg38,719 chainNetMm10,719 netHg38,716 netMm10,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 26740527 evaSnp,1206 evaSnp4,1251 evaSnp5,1251 268 genscan,226 27 microsat,131 simpleRepeat,91 28 HLTOGAannotvHg38v1,367 evaSnp,1155 evaSnp4,1200 evaSnp5,1200 29 tanDups,265 tanDups,411 2900 chainHg38,723 chainHg38,735 chainMm10,723 chainMm10,735 chainNetHg38,726 chainNetHg38,738 chainNetMm10,726 chainNetMm10,738 netHg38,723 netHg38,735 netMm10,723 netMm10,735 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainHg38,431 chainHg38,708 chainMm10,431 chainMm10,708 chainNetHg38,434 chainNetHg38,711 chainNetMm10,434 chainNetMm10,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 est,478 est,531 est,585 evaSnp,4 evaSnp,13 evaSnp,39 evaSnp,670 evaSnp,908 evaSnp,1097 gap,143 intronEst,112 intronEst,559 intronEst,612 intronEst,666 microsat,68 netHg38,431 netHg38,708 netMm10,431 netMm10,708 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 uniprot,1123 uniprot,1194 xenoMrna,88 3.1 augustusGene,24 30 chainHg38,1072 chainMm10,1072 chainNetHg38,1075 chainNetMm10,1075 ensGene,201 netHg38,1072 netMm10,1072 tanDups,350 tanDups,422 tanDups,432 tanDups,440 tanDups,449 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainHg38,680 chainMm10,680 chainNetHg38,683 chainNetMm10,683 netHg38,680 netMm10,680 317900 chainHg38,728 chainHg38,740 chainMm10,728 chainMm10,740 chainNetHg38,731 chainNetHg38,743 chainNetMm10,731 chainNetMm10,743 netHg38,728 netHg38,740 netMm10,728 netMm10,740 318300 chainHg38,752 chainMm10,752 chainNetHg38,755 chainNetMm10,755 netHg38,752 netMm10,752 32 est,789 evaSnp,1202 evaSnp4,1247 evaSnp5,1247 intronEst,82 intronEst,873 mrna,506 xenoMrna,581 32111 chainHg38,713 chainMm10,713 chainNetHg38,716 chainNetMm10,716 netHg38,713 netMm10,713 33 refGene,426 refSeqComposite,1813 xenoRefGene,385 3300 chainHg38,747 chainMm10,747 chainNetHg38,750 chainNetMm10,750 netHg38,747 netMm10,747 34718739 evaSnp,1166 evaSnp4,1211 evaSnp5,1211 34990190 refSeqComposite,1555 350 chainHg38,718 chainHg38,730 chainMm10,718 chainMm10,730 chainNetHg38,721 chainNetHg38,733 chainNetMm10,721 chainNetMm10,733 netHg38,718 netHg38,730 netMm10,718 netMm10,730 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1557 37104600 HLTOGAannotvHg38v1,372 38-41 ensGene,203 380 HLTOGAannotvHg38v1,368 384 gap,155 39s ensGene,163 3_prime_utr_variant evaSnp,769 evaSnp4,790 evaSnp5,790 4 est,809 evaSnp4,4 evaSnp4,13 evaSnp4,39 evaSnp4,688 evaSnp4,949 evaSnp4,1138 gold,152 intronEst,893 mrna,526 refGene,352 refSeqComposite,1739 xenoMrna,601 xenoRefGene,311 40 uniprot,2002 400 transMapV5,108 409 gap,160 41 est,763 intronEst,847 mrna,480 xenoMrna,555 418-420 nestedRepeats,359 rmsk,382 42 refGene,392 refSeqComposite,1779 xenoRefGene,351 425 chainHg38,719 chainHg38,731 chainMm10,719 chainMm10,731 chainNetHg38,722 chainNetHg38,734 chainNetMm10,722 chainNetMm10,734 netHg38,719 netHg38,731 netMm10,719 netMm10,731 45 refSeqComposite,941 450 chainHg38,720 chainHg38,732 chainMm10,720 chainMm10,732 chainNetHg38,723 chainNetHg38,735 chainNetMm10,723 chainNetMm10,735 netHg38,720 netHg38,732 netMm10,720 netMm10,732 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 est,475 est,516 est,542 evaSnp5,4 evaSnp5,13 evaSnp5,39 evaSnp5,688 evaSnp5,949 evaSnp5,1138 intronEst,556 intronEst,597 intronEst,623 transMapEnsemblV5,9 transMapEnsemblV5,780 transMapEstV5,7 transMapEstV5,749 transMapRefSeqV5,8 transMapRefSeqV5,749 transMapRnaV5,8 transMapRnaV5,749 transMapV5,6 transMapV5,855 uniprot,2048 xenoMrna,86 5-base gc5BaseBw,6 gc5BaseBw,27 50 HLTOGAannotvHg38v1,167 HLTOGAannotvHg38v1,214 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 500 est,32 intronEst,44 573-80 microsat,133 simpleRepeat,93 57900 chainHg38,725 chainHg38,737 chainMm10,725 chainMm10,737 chainNetHg38,728 chainNetHg38,740 chainNetMm10,728 chainNetMm10,740 netHg38,725 netHg38,737 netMm10,725 netMm10,737 58300 chainHg38,749 chainMm10,749 chainNetHg38,752 chainNetMm10,752 netHg38,749 netMm10,749 5_prime_utr_variant evaSnp,768 evaSnp4,789 evaSnp5,789 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainHg38,721 chainHg38,733 chainMm10,721 chainMm10,733 chainNetHg38,724 chainNetHg38,736 chainNetMm10,724 chainNetMm10,736 netHg38,721 netHg38,733 netMm10,721 netMm10,733 617 gap,159 637-44 augustusGene,313 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 656-64 est,810 intronEst,894 mrna,527 refGene,353 refSeqComposite,1740 xenoMrna,602 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 6643 HLTOGAannotvHg38v1,369 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 72111 chainHg38,714 chainMm10,714 chainNetHg38,717 chainNetMm10,717 netHg38,714 netMm10,714 743-8 nestedRepeats,414 rmsk,437 750 chainHg38,742 chainMm10,742 chainNetHg38,745 chainNetMm10,745 est,664 intronEst,745 netHg38,742 netMm10,742 78-94 genscan,228 80 HLTOGAannotvHg38v1,145 HLTOGAannotvHg38v1,179 HLTOGAannotvHg38v1,226 HLTOGAannotvHg38v1,245 825 chainHg38,743 chainMm10,743 chainNetHg38,746 chainNetMm10,746 netHg38,743 netMm10,743 850 chainHg38,744 chainMm10,744 chainNetHg38,747 chainNetMm10,747 netHg38,744 netMm10,744 89 gold,157 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 evaSnp,1203 evaSnp4,1248 evaSnp5,1248 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainHg38,722 chainHg38,734 chainMm10,722 chainMm10,734 chainNetHg38,725 chainNetHg38,737 chainNetMm10,725 chainNetMm10,737 netHg38,722 netHg38,734 netMm10,722 netMm10,734 9149143 genscan,230 93 uniprot,1483 95 tanDups,209 96 est,712 intronEst,793 mrna,428 refGene,308 refSeqComposite,1276 9862982 microsat,135 simpleRepeat,95 989 gold,153 _alt uniprot,1419 _fix uniprot,1421 a HLTOGAannotvHg38v1,25 HLTOGAannotvHg38v1,46 HLTOGAannotvHg38v1,50 HLTOGAannotvHg38v1,62 HLTOGAannotvHg38v1,74 HLTOGAannotvHg38v1,116 HLTOGAannotvHg38v1,138 HLTOGAannotvHg38v1,268 HLTOGAannotvHg38v1,291 HLTOGAannotvHg38v1,296 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainHg38,75 chainHg38,144 chainHg38,196 chainHg38,451 chainHg38,461 chainHg38,465 chainHg38,532 chainHg38,549 chainHg38,552 chainHg38,618 chainHg38,623 chainHg38,628 chainHg38,632 chainHg38,643 chainHg38,675 chainHg38,794 chainHg38,808 chainHg38,814 chainHg38,820 chainHg38,824 chainHg38,827 chainHg38,855 chainHg38,1045 chainHg38,1069 chainHg38,1085 chainMm10,75 chainMm10,144 chainMm10,196 chainMm10,451 chainMm10,461 chainMm10,465 chainMm10,532 chainMm10,549 chainMm10,552 chainMm10,618 chainMm10,623 chainMm10,628 chainMm10,632 chainMm10,643 chainMm10,675 chainMm10,794 chainMm10,808 chainMm10,814 chainMm10,820 chainMm10,824 chainMm10,827 chainMm10,855 chainMm10,1045 chainMm10,1069 chainMm10,1085 chainNetHg38,78 chainNetHg38,147 chainNetHg38,199 chainNetHg38,454 chainNetHg38,464 chainNetHg38,468 chainNetHg38,535 chainNetHg38,552 chainNetHg38,555 chainNetHg38,621 chainNetHg38,626 chainNetHg38,631 chainNetHg38,635 chainNetHg38,646 chainNetHg38,678 chainNetHg38,797 chainNetHg38,811 chainNetHg38,817 chainNetHg38,823 chainNetHg38,827 chainNetHg38,830 chainNetHg38,858 chainNetHg38,1048 chainNetHg38,1072 chainNetHg38,1088 chainNetMm10,78 chainNetMm10,147 chainNetMm10,199 chainNetMm10,454 chainNetMm10,464 chainNetMm10,468 chainNetMm10,535 chainNetMm10,552 chainNetMm10,555 chainNetMm10,621 chainNetMm10,626 chainNetMm10,631 chainNetMm10,635 chainNetMm10,646 chainNetMm10,678 chainNetMm10,797 chainNetMm10,811 chainNetMm10,817 chainNetMm10,823 chainNetMm10,827 chainNetMm10,830 chainNetMm10,858 chainNetMm10,1048 chainNetMm10,1072 chainNetMm10,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 est,115 est,132 est,167 est,193 est,266 est,385 est,465 est,469 est,595 est,621 est,629 est,681 est,700 evaSnp,103 evaSnp,120 evaSnp,130 evaSnp,207 evaSnp,217 evaSnp,349 evaSnp,469 evaSnp,513 evaSnp,517 evaSnp,521 evaSnp,563 evaSnp,570 evaSnp,637 evaSnp,643 evaSnp,685 evaSnp,875 evaSnp,996 evaSnp,1040 evaSnp,1068 evaSnp,1128 evaSnp,1141 evaSnp4,103 evaSnp4,120 evaSnp4,130 evaSnp4,207 evaSnp4,217 evaSnp4,349 evaSnp4,487 evaSnp4,531 evaSnp4,535 evaSnp4,539 evaSnp4,581 evaSnp4,588 evaSnp4,655 evaSnp4,661 evaSnp4,896 evaSnp4,1037 evaSnp4,1081 evaSnp4,1109 evaSnp4,1173 evaSnp4,1186 evaSnp5,103 evaSnp5,120 evaSnp5,130 evaSnp5,207 evaSnp5,217 evaSnp5,349 evaSnp5,487 evaSnp5,531 evaSnp5,535 evaSnp5,539 evaSnp5,581 evaSnp5,588 evaSnp5,655 evaSnp5,661 evaSnp5,896 evaSnp5,1037 evaSnp5,1081 evaSnp5,1109 evaSnp5,1173 evaSnp5,1186 gap,99 gap,103 gc5BaseBw,44 genscan,102 genscan,132 gold,117 gold,123 intronEst,115 intronEst,148 intronEst,196 intronEst,213 intronEst,248 intronEst,274 intronEst,347 intronEst,466 intronEst,546 intronEst,550 intronEst,676 intronEst,702 intronEst,710 intronEst,762 intronEst,781 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netHg38,75 netHg38,144 netHg38,196 netHg38,451 netHg38,461 netHg38,465 netHg38,532 netHg38,549 netHg38,552 netHg38,618 netHg38,623 netHg38,628 netHg38,632 netHg38,643 netHg38,675 netHg38,794 netHg38,808 netHg38,814 netHg38,820 netHg38,824 netHg38,827 netHg38,855 netHg38,1045 netHg38,1069 netHg38,1085 netMm10,75 netMm10,144 netMm10,196 netMm10,451 netMm10,461 netMm10,465 netMm10,532 netMm10,549 netMm10,552 netMm10,618 netMm10,623 netMm10,628 netMm10,632 netMm10,643 netMm10,675 netMm10,794 netMm10,808 netMm10,814 netMm10,820 netMm10,824 netMm10,827 netMm10,855 netMm10,1045 netMm10,1069 netMm10,1085 refGene,277 refGene,296 refGene,367 refGene,410 refSeqComposite,147 refSeqComposite,158 refSeqComposite,295 refSeqComposite,310 refSeqComposite,529 refSeqComposite,642 refSeqComposite,790 refSeqComposite,1052 refSeqComposite,1245 refSeqComposite,1264 refSeqComposite,1517 refSeqComposite,1536 refSeqComposite,1562 refSeqComposite,1651 refSeqComposite,1754 refSeqComposite,1797 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 tanDups,28 tanDups,46 tanDups,111 tanDups,120 tanDups,153 tanDups,219 tanDups,277 tanDups,368 tanDups,428 tanDups,454 transMapEnsemblV5,83 transMapEnsemblV5,115 transMapEnsemblV5,205 transMapEnsemblV5,318 transMapEnsemblV5,353 transMapEnsemblV5,397 transMapEnsemblV5,423 transMapEnsemblV5,476 transMapEnsemblV5,546 transMapEnsemblV5,625 transMapEnsemblV5,653 transMapEnsemblV5,712 transMapEstV5,52 transMapEstV5,84 transMapEstV5,174 transMapEstV5,287 transMapEstV5,322 transMapEstV5,366 transMapEstV5,392 transMapEstV5,445 transMapEstV5,515 transMapEstV5,594 transMapEstV5,622 transMapEstV5,681 transMapRefSeqV5,52 transMapRefSeqV5,84 transMapRefSeqV5,174 transMapRefSeqV5,287 transMapRefSeqV5,322 transMapRefSeqV5,366 transMapRefSeqV5,392 transMapRefSeqV5,445 transMapRefSeqV5,515 transMapRefSeqV5,594 transMapRefSeqV5,622 transMapRefSeqV5,681 transMapRnaV5,52 transMapRnaV5,84 transMapRnaV5,174 transMapRnaV5,287 transMapRnaV5,322 transMapRnaV5,366 transMapRnaV5,392 transMapRnaV5,445 transMapRnaV5,515 transMapRnaV5,594 transMapRnaV5,622 transMapRnaV5,681 transMapV5,53 transMapV5,190 transMapV5,280 transMapV5,393 transMapV5,428 transMapV5,472 transMapV5,498 transMapV5,551 transMapV5,621 transMapV5,700 transMapV5,728 transMapV5,787 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoMrna,107 xenoMrna,136 xenoMrna,153 xenoMrna,188 xenoMrna,214 xenoMrna,287 xenoMrna,406 xenoMrna,471 xenoMrna,491 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainHg38,668 chainMm10,668 chainNetHg38,671 chainNetMm10,671 netHg38,668 netMm10,668 aa evaSnp,368 evaSnp,631 evaSnp4,368 evaSnp4,649 evaSnp5,368 evaSnp5,649 unipModif,1 windowmaskerSdust,97 aachange evaSnp,320 evaSnp4,320 evaSnp5,320 ab augustusGene,3 augustusGene,16 abbreviated chainHg38,581 chainMm10,581 chainNetHg38,584 chainNetMm10,584 netHg38,581 netMm10,581 about HLTOGAannotvHg38v1,301 chainHg38,457 chainHg38,470 chainHg38,844 chainMm10,457 chainMm10,470 chainMm10,844 chainNetHg38,460 chainNetHg38,473 chainNetHg38,847 chainNetMm10,460 chainNetMm10,473 chainNetMm10,847 est,31 est,411 evaSnp,221 evaSnp,928 evaSnp4,221 evaSnp4,969 evaSnp5,221 evaSnp5,969 gap,35 genscan,127 gold,37 intronEst,43 intronEst,492 microsat,98 mrna,348 netHg38,457 netHg38,470 netHg38,844 netMm10,457 netMm10,470 netMm10,844 refGene,216 refSeqComposite,95 refSeqComposite,850 refSeqComposite,1185 refSeqComposite,1380 refSeqComposite,1459 simpleRepeat,59 transMapEnsemblV5,132 transMapEstV5,101 transMapRefSeqV5,101 transMapRnaV5,101 transMapV5,207 xenoMrna,423 xenoRefGene,176 above chainHg38,529 chainHg38,541 chainHg38,561 chainMm10,529 chainMm10,541 chainMm10,561 chainNetHg38,532 chainNetHg38,544 chainNetHg38,564 chainNetMm10,532 chainNetMm10,544 chainNetMm10,564 nestedRepeats,218 netHg38,529 netHg38,541 netHg38,561 netMm10,529 netMm10,541 netMm10,561 uniprot,1525 abundance chainHg38,178 chainMm10,178 chainNetHg38,181 chainNetMm10,181 netHg38,178 netMm10,178 acaaaaac evaSnp,613 evaSnp4,631 evaSnp5,631 acad chainHg38,1065 chainMm10,1065 chainNetHg38,1068 chainNetMm10,1068 netHg38,1065 netMm10,1065 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 evaSnp,911 evaSnp,981 evaSnp4,952 evaSnp4,1022 evaSnp5,952 evaSnp5,1022 refSeqComposite,1286 refSeqComposite,1350 refSeqComposite,1440 refSeqComposite,1649 transMapEnsemblV5,516 transMapEnsemblV5,575 transMapEstV5,485 transMapEstV5,544 transMapRefSeqV5,485 transMapRefSeqV5,544 transMapRnaV5,485 transMapRnaV5,544 transMapV5,591 transMapV5,650 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1295 refSeqComposite,1318 transMapEnsemblV5,525 transMapEstV5,494 transMapRefSeqV5,494 transMapRnaV5,494 transMapV5,600 accesses refSeqComposite,1623 accessing refSeqComposite,1381 transMapEnsemblV5,568 transMapEstV5,537 transMapRefSeqV5,537 transMapRnaV5,537 transMapV5,643 accession refGene,156 refGene,168 refSeqComposite,777 refSeqComposite,802 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,116 xenoRefGene,128 accession.version-srcuniq.destuniq transMapEnsemblV5,419 transMapEstV5,388 transMapRefSeqV5,388 transMapRnaV5,388 transMapV5,494 accessions refSeqComposite,221 refSeqComposite,350 refSeqComposite,492 transMapEnsemblV5,391 transMapEstV5,360 transMapRefSeqV5,360 transMapRnaV5,360 transMapV5,466 accomplished evaSnp,186 evaSnp4,186 evaSnp5,186 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 evaSnp,312 evaSnp,403 evaSnp,412 evaSnp,728 evaSnp4,312 evaSnp4,421 evaSnp4,430 evaSnp4,749 evaSnp5,312 evaSnp5,421 evaSnp5,430 evaSnp5,749 nestedRepeats,183 accurately HLTOGAannotvHg38v1,91 acgt chainHg38,667 chainMm10,667 chainNetHg38,670 chainNetMm10,670 netHg38,667 netMm10,667 acid evaSnp,248 evaSnp,331 evaSnp,870 evaSnp4,248 evaSnp4,331 evaSnp4,891 evaSnp5,248 evaSnp5,331 evaSnp5,891 unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids ensGene,196 est,759 est,784 evaSnp,850 evaSnp,1151 evaSnp4,871 evaSnp4,1196 evaSnp5,871 evaSnp5,1196 intronEst,843 intronEst,868 microsat,126 mrna,476 mrna,501 refGene,388 refGene,421 refSeqComposite,1775 refSeqComposite,1808 simpleRepeat,86 uniprot,620 uniprot,1998 xenoMrna,551 xenoMrna,576 xenoRefGene,347 xenoRefGene,380 acronym uniprot,546 added chainHg38,591 chainMm10,591 chainNetHg38,594 chainNetMm10,594 nestedRepeats,147 netHg38,591 netMm10,591 transMapEnsemblV5,425 transMapEnsemblV5,435 transMapEstV5,394 transMapEstV5,404 transMapRefSeqV5,394 transMapRefSeqV5,404 transMapRnaV5,394 transMapRnaV5,404 transMapV5,500 transMapV5,510 uniprot,1187 additional HLTOGAannotvHg38v1,299 evaSnp,498 evaSnp,548 evaSnp4,516 evaSnp4,566 evaSnp5,516 evaSnp5,566 nestedRepeats,288 rmsk,295 additions refGene,59 refSeqComposite,118 adjust refSeqComposite,740 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainHg38,930 chainHg38,962 chainMm10,930 chainMm10,962 chainNetHg38,933 chainNetHg38,965 chainNetMm10,933 chainNetMm10,965 netHg38,930 netHg38,962 netMm10,930 netMm10,962 advise refSeqComposite,77 ae HLTOGAannotvHg38v1,347 af evaSnp,1130 evaSnp4,1175 evaSnp5,1175 nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainHg38,85 chainMm10,85 chainNetHg38,88 chainNetMm10,88 netHg38,85 netMm10,85 after chainHg38,902 chainMm10,902 chainNetHg38,905 chainNetMm10,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netHg38,902 netMm10,902 tanDups,193 uniprot,294 uniprot,1329 ag intronEst,89 again transMapEnsemblV5,407 transMapEstV5,376 transMapRefSeqV5,376 transMapRnaV5,376 transMapV5,482 uniprot,629 uniprot,1500 against est,649 intronEst,35 intronEst,730 mrna,341 mrna,389 refGene,260 refSeqComposite,1228 transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 xenoMrna,416 xenoMrna,463 xenoRefGene,220 agarwala windowmaskerSdust,98 agp gap,49 gap,58 gap,65 gold,48 gold,57 gold,64 ahead evaSnp,1162 evaSnp4,1207 evaSnp5,1207 ahmed HLTOGAannotvHg38v1,348 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al HLTOGAannotvHg38v1,355 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 evaSnp,828 evaSnp,1136 evaSnp4,849 evaSnp4,1181 evaSnp5,849 evaSnp5,1181 refGene,379 refSeqComposite,1766 transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 xenoRefGene,338 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainHg38,194 chainMm10,194 chainNetHg38,197 chainNetMm10,197 est,679 intronEst,760 netHg38,194 netMm10,194 uniprot,1216 alignable chainHg38,22 chainHg38,38 chainMm10,22 chainMm10,38 chainNetHg38,25 chainNetHg38,41 chainNetMm10,25 chainNetMm10,41 netHg38,22 netHg38,38 netMm10,22 netMm10,38 aligned chainHg38,584 chainMm10,584 chainNetHg38,587 chainNetMm10,587 est,648 est,684 intronEst,34 intronEst,152 intronEst,729 intronEst,765 mrna,388 mrna,400 netHg38,584 netMm10,584 refGene,259 refGene,280 refSeqComposite,80 refSeqComposite,189 refSeqComposite,304 refSeqComposite,894 refSeqComposite,1057 refSeqComposite,1227 refSeqComposite,1248 tanDups,197 transMapV5,116 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoMrna,462 xenoMrna,474 xenoRefGene,219 xenoRefGene,240 aligning chainHg38,133 chainHg38,329 chainHg38,359 chainMm10,133 chainMm10,329 chainMm10,359 chainNetHg38,136 chainNetHg38,332 chainNetHg38,362 chainNetMm10,136 chainNetMm10,332 chainNetMm10,362 est,397 intronEst,478 netHg38,133 netHg38,329 netHg38,359 netMm10,133 netMm10,329 netMm10,359 uniprot,952 alignment HLTOGAannotvHg38v1,65 chainHg38,257 chainHg38,1012 chainMm10,257 chainMm10,1012 chainNetHg38,260 chainNetHg38,1015 chainNetMm10,260 chainNetMm10,1015 est,55 est,420 est,426 est,438 est,689 est,802 intronEst,76 intronEst,139 intronEst,501 intronEst,507 intronEst,519 intronEst,770 intronEst,886 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netHg38,8 netHg38,257 netHg38,1012 netMm10,8 netMm10,257 netMm10,1012 refGene,269 refGene,285 refGene,345 refSeqComposite,193 refSeqComposite,327 refSeqComposite,458 refSeqComposite,1146 refSeqComposite,1237 refSeqComposite,1253 refSeqComposite,1732 tanDups,233 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,103 transMapEnsemblV5,140 transMapEnsemblV5,196 transMapEnsemblV5,209 transMapEnsemblV5,387 transMapEnsemblV5,430 transMapEstV5,25 transMapEstV5,48 transMapEstV5,72 transMapEstV5,109 transMapEstV5,165 transMapEstV5,178 transMapEstV5,356 transMapEstV5,399 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,72 transMapRefSeqV5,109 transMapRefSeqV5,165 transMapRefSeqV5,178 transMapRefSeqV5,356 transMapRefSeqV5,399 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,72 transMapRnaV5,109 transMapRnaV5,165 transMapRnaV5,178 transMapRnaV5,356 transMapRnaV5,399 transMapV5,24 transMapV5,49 transMapV5,178 transMapV5,215 transMapV5,271 transMapV5,284 transMapV5,462 transMapV5,505 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoMrna,41 xenoMrna,434 xenoMrna,440 xenoMrna,452 xenoMrna,479 xenoMrna,594 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments HLTOGAannotvHg38v1,23 HLTOGAannotvHg38v1,80 HLTOGAannotvHg38v1,313 augustusGene,300 chainHg38,9 chainHg38,63 chainHg38,444 chainHg38,596 chainHg38,608 chainHg38,616 chainHg38,642 chainHg38,760 chainHg38,1032 chainHg38,1097 chainMm10,9 chainMm10,63 chainMm10,444 chainMm10,596 chainMm10,608 chainMm10,616 chainMm10,642 chainMm10,760 chainMm10,1032 chainMm10,1097 chainNetHg38,12 chainNetHg38,66 chainNetHg38,447 chainNetHg38,599 chainNetHg38,611 chainNetHg38,619 chainNetHg38,645 chainNetHg38,763 chainNetHg38,1035 chainNetHg38,1100 chainNetHg38Viewchain,10 chainNetHg38Viewnet,10 chainNetMm10,12 chainNetMm10,66 chainNetMm10,447 chainNetMm10,599 chainNetMm10,611 chainNetMm10,619 chainNetMm10,645 chainNetMm10,763 chainNetMm10,1035 chainNetMm10,1100 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 est,14 est,698 evaSnp,839 evaSnp4,860 evaSnp5,860 intronEst,16 intronEst,779 mrna,15 mrna,414 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netHg38,63 netHg38,444 netHg38,596 netHg38,608 netHg38,616 netHg38,642 netHg38,760 netHg38,1032 netHg38,1097 netMm10,63 netMm10,444 netMm10,596 netMm10,608 netMm10,616 netMm10,642 netMm10,760 netMm10,1032 netMm10,1097 refGene,294 refSeqComposite,267 refSeqComposite,366 refSeqComposite,433 refSeqComposite,435 refSeqComposite,1207 refSeqComposite,1262 refSeqComposite,1419 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,154 transMapEnsemblV5,167 transMapEnsemblV5,325 transMapEnsemblV5,337 transMapEnsemblV5,347 transMapEnsemblV5,370 transMapEnsemblV5,441 transMapEnsemblV5,453 transMapEnsemblV5,768 transMapEstV5,19 transMapEstV5,41 transMapEstV5,123 transMapEstV5,136 transMapEstV5,294 transMapEstV5,306 transMapEstV5,316 transMapEstV5,339 transMapEstV5,410 transMapEstV5,422 transMapEstV5,737 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,123 transMapRefSeqV5,136 transMapRefSeqV5,294 transMapRefSeqV5,306 transMapRefSeqV5,316 transMapRefSeqV5,339 transMapRefSeqV5,410 transMapRefSeqV5,422 transMapRefSeqV5,737 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,123 transMapRnaV5,136 transMapRnaV5,294 transMapRnaV5,306 transMapRnaV5,316 transMapRnaV5,339 transMapRnaV5,410 transMapRnaV5,422 transMapRnaV5,737 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,67 transMapV5,85 transMapV5,127 transMapV5,140 transMapV5,229 transMapV5,242 transMapV5,400 transMapV5,412 transMapV5,422 transMapV5,445 transMapV5,516 transMapV5,528 transMapV5,843 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoMrna,16 xenoMrna,489 xenoRefGene,254 aligns transMapV5,162 all augustusGene,207 chainHg38,615 chainMm10,615 chainNetHg38,618 chainNetMm10,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 est,189 est,243 est,298 est,393 est,485 evaSnp,342 evaSnp,366 evaSnp,384 evaSnp,1148 evaSnp4,342 evaSnp4,366 evaSnp4,384 evaSnp4,1193 evaSnp5,342 evaSnp5,366 evaSnp5,384 evaSnp5,1193 intronEst,118 intronEst,270 intronEst,324 intronEst,379 intronEst,474 intronEst,566 mrna,135 mrna,189 mrna,244 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netHg38,615 netMm10,615 refSeqComposite,33 refSeqComposite,84 refSeqComposite,177 refSeqComposite,182 refSeqComposite,198 refSeqComposite,200 refSeqComposite,214 refSeqComposite,344 refSeqComposite,380 refSeqComposite,585 refSeqComposite,788 refSeqComposite,1405 refSeqComposite,1569 refSeqComposite,1661 refSeqComposite,1666 rmsk,65 tanDups,462 transMapEnsemblV5,190 transMapEstV5,159 transMapRefSeqV5,159 transMapRnaV5,159 transMapV5,265 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 xenoMrna,210 xenoMrna,264 xenoMrna,319 allele evaSnp,480 evaSnp,509 evaSnp,559 evaSnp4,498 evaSnp4,527 evaSnp4,577 evaSnp5,498 evaSnp5,527 evaSnp5,577 alleles evaSnp,231 evaSnp,594 evaSnp4,231 evaSnp4,612 evaSnp5,231 evaSnp5,612 allow tanDups,272 allowed est,660 intronEst,741 tanDups,284 allows augustusGene,168 chainHg38,80 chainMm10,80 chainNetHg38,83 chainNetMm10,83 est,388 intronEst,469 mrna,334 netHg38,80 netMm10,80 refGene,187 refSeqComposite,821 transMapEnsemblV5,118 transMapEnsemblV5,287 transMapEstV5,87 transMapEstV5,256 transMapRefSeqV5,87 transMapRefSeqV5,256 transMapRnaV5,87 transMapRnaV5,256 transMapV5,193 transMapV5,362 xenoMrna,409 xenoRefGene,147 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,181 transMapEstV5,150 transMapRefSeqV5,150 transMapRnaV5,150 transMapV5,256 alpha refSeqComposite,417 already chainHg38,805 chainMm10,805 chainNetHg38,808 chainNetMm10,808 netHg38,805 netMm10,805 also HLTOGAannotvHg38v1,190 chainHg38,91 chainMm10,91 chainNetHg38,94 chainNetMm10,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 est,270 est,378 est,429 est,598 evaSnp,1060 evaSnp4,918 evaSnp4,1101 evaSnp5,918 evaSnp5,1101 gap,31 gold,33 intronEst,351 intronEst,459 intronEst,510 intronEst,679 mrna,216 mrna,324 mrna,368 netHg38,91 netMm10,91 refSeqComposite,1125 refSeqComposite,1316 refSeqComposite,1349 refSeqComposite,1581 tanDups,458 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEnsemblV5,645 transMapEstV5,77 transMapEstV5,112 transMapEstV5,614 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRefSeqV5,614 transMapRnaV5,77 transMapRnaV5,112 transMapRnaV5,614 transMapV5,183 transMapV5,218 transMapV5,720 uniprot,666 uniprot,706 uniprot,1799 xenoMrna,291 xenoMrna,399 xenoMrna,443 alt evaSnp,511 evaSnp,529 evaSnp,561 evaSnp,579 evaSnp,593 evaSnp,612 evaSnp,632 evaSnp4,529 evaSnp4,547 evaSnp4,579 evaSnp4,597 evaSnp4,611 evaSnp4,630 evaSnp4,650 evaSnp5,529 evaSnp5,547 evaSnp5,579 evaSnp5,597 evaSnp5,611 evaSnp5,630 evaSnp5,650 uniprot,850 alter est,126 intronEst,207 mrna,72 xenoMrna,147 alteration evaSnp,635 evaSnp4,653 evaSnp5,653 alternate evaSnp,230 evaSnp,479 evaSnp,508 evaSnp,558 evaSnp4,230 evaSnp4,497 evaSnp4,526 evaSnp4,576 evaSnp5,230 evaSnp5,497 evaSnp5,526 evaSnp5,576 alternating gold,89 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always evaSnp,846 evaSnp4,867 evaSnp5,867 gold,120 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 xenoMrna,85 ambiguous refSeqComposite,986 amino evaSnp,247 evaSnp,330 evaSnp,849 evaSnp,869 evaSnp4,247 evaSnp4,330 evaSnp4,870 evaSnp4,890 evaSnp5,247 evaSnp5,330 evaSnp5,870 evaSnp5,890 unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amino-acid evaSnp,830 evaSnp4,851 evaSnp5,851 amount rmsk,215 amsterdam genscan,201 an chainHg38,151 chainHg38,177 chainHg38,183 chainMm10,151 chainMm10,177 chainMm10,183 chainNetHg38,154 chainNetHg38,180 chainNetHg38,186 chainNetMm10,154 chainNetMm10,180 chainNetMm10,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 est,447 est,494 est,577 evaSnp,181 evaSnp,210 evaSnp,303 evaSnp,520 evaSnp,567 evaSnp,623 evaSnp4,181 evaSnp4,210 evaSnp4,303 evaSnp4,538 evaSnp4,585 evaSnp4,641 evaSnp5,181 evaSnp5,210 evaSnp5,303 evaSnp5,538 evaSnp5,585 evaSnp5,641 gc5BaseBw,65 intronEst,59 intronEst,528 intronEst,575 intronEst,658 nestedRepeats,196 nestedRepeats,347 netHg38,151 netHg38,177 netHg38,183 netMm10,151 netMm10,177 netMm10,183 refGene,181 refGene,268 refGene,381 refSeqComposite,744 refSeqComposite,815 refSeqComposite,1236 refSeqComposite,1768 rmsk,370 tanDups,58 tanDups,126 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analysis evaSnp,959 evaSnp,990 evaSnp4,1000 evaSnp4,1031 evaSnp5,1000 evaSnp5,1031 refSeqComposite,75 refSeqComposite,1454 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and HLTOGAannotvHg38v1,12 HLTOGAannotvHg38v1,34 HLTOGAannotvHg38v1,61 HLTOGAannotvHg38v1,69 HLTOGAannotvHg38v1,83 HLTOGAannotvHg38v1,86 HLTOGAannotvHg38v1,110 HLTOGAannotvHg38v1,130 HLTOGAannotvHg38v1,153 HLTOGAannotvHg38v1,176 HLTOGAannotvHg38v1,223 HLTOGAannotvHg38v1,310 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainHg38,97 chainHg38,111 chainHg38,225 chainHg38,233 chainHg38,247 chainHg38,285 chainHg38,307 chainHg38,433 chainHg38,587 chainHg38,622 chainHg38,630 chainHg38,771 chainHg38,849 chainHg38,881 chainHg38,892 chainHg38,901 chainHg38,926 chainHg38,941 chainHg38,966 chainHg38,972 chainHg38,978 chainHg38,985 chainHg38,991 chainHg38,1055 chainHg38,1060 chainMm10,97 chainMm10,111 chainMm10,225 chainMm10,233 chainMm10,247 chainMm10,285 chainMm10,307 chainMm10,433 chainMm10,587 chainMm10,622 chainMm10,630 chainMm10,771 chainMm10,849 chainMm10,881 chainMm10,892 chainMm10,901 chainMm10,926 chainMm10,941 chainMm10,966 chainMm10,972 chainMm10,978 chainMm10,985 chainMm10,991 chainMm10,1055 chainMm10,1060 chainNetHg38,10 chainNetHg38,100 chainNetHg38,114 chainNetHg38,228 chainNetHg38,236 chainNetHg38,250 chainNetHg38,288 chainNetHg38,310 chainNetHg38,436 chainNetHg38,590 chainNetHg38,625 chainNetHg38,633 chainNetHg38,774 chainNetHg38,852 chainNetHg38,884 chainNetHg38,895 chainNetHg38,904 chainNetHg38,929 chainNetHg38,944 chainNetHg38,969 chainNetHg38,975 chainNetHg38,981 chainNetHg38,988 chainNetHg38,994 chainNetHg38,1058 chainNetHg38,1063 chainNetHg38Viewchain,8 chainNetHg38Viewnet,8 chainNetMm10,10 chainNetMm10,100 chainNetMm10,114 chainNetMm10,228 chainNetMm10,236 chainNetMm10,250 chainNetMm10,288 chainNetMm10,310 chainNetMm10,436 chainNetMm10,590 chainNetMm10,625 chainNetMm10,633 chainNetMm10,774 chainNetMm10,852 chainNetMm10,884 chainNetMm10,895 chainNetMm10,904 chainNetMm10,929 chainNetMm10,944 chainNetMm10,969 chainNetMm10,975 chainNetMm10,981 chainNetMm10,988 chainNetMm10,994 chainNetMm10,1058 chainNetMm10,1063 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 est,8 est,23 est,45 est,85 est,129 est,290 est,454 est,468 est,476 est,604 est,709 evaSnp,15 evaSnp,26 evaSnp,29 evaSnp,56 evaSnp,123 evaSnp,177 evaSnp,229 evaSnp,252 evaSnp,318 evaSnp,433 evaSnp,448 evaSnp,506 evaSnp,528 evaSnp,556 evaSnp,578 evaSnp,592 evaSnp,691 evaSnp,739 evaSnp,773 evaSnp,801 evaSnp,863 evaSnp,867 evaSnp,925 evaSnp,989 evaSnp,1051 evaSnp,1108 evaSnp,1194 evaSnp4,15 evaSnp4,26 evaSnp4,29 evaSnp4,56 evaSnp4,123 evaSnp4,177 evaSnp4,229 evaSnp4,252 evaSnp4,318 evaSnp4,451 evaSnp4,466 evaSnp4,524 evaSnp4,546 evaSnp4,574 evaSnp4,596 evaSnp4,610 evaSnp4,703 evaSnp4,731 evaSnp4,760 evaSnp4,794 evaSnp4,822 evaSnp4,884 evaSnp4,888 evaSnp4,924 evaSnp4,966 evaSnp4,1030 evaSnp4,1092 evaSnp4,1149 evaSnp4,1239 evaSnp5,15 evaSnp5,26 evaSnp5,29 evaSnp5,56 evaSnp5,123 evaSnp5,177 evaSnp5,229 evaSnp5,252 evaSnp5,318 evaSnp5,451 evaSnp5,466 evaSnp5,524 evaSnp5,546 evaSnp5,574 evaSnp5,596 evaSnp5,610 evaSnp5,703 evaSnp5,731 evaSnp5,760 evaSnp5,794 evaSnp5,822 evaSnp5,884 evaSnp5,888 evaSnp5,924 evaSnp5,966 evaSnp5,1030 evaSnp5,1092 evaSnp5,1149 evaSnp5,1239 gap,5 gap,80 gap,102 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 intronEst,10 intronEst,25 intronEst,86 intronEst,129 intronEst,166 intronEst,210 intronEst,371 intronEst,535 intronEst,549 intronEst,557 intronEst,685 intronEst,790 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqGenomicDiff,8 ncbiRefSeqGenomicDiff,13 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netHg38,97 netHg38,111 netHg38,225 netHg38,233 netHg38,247 netHg38,285 netHg38,307 netHg38,433 netHg38,587 netHg38,622 netHg38,630 netHg38,771 netHg38,849 netHg38,881 netHg38,892 netHg38,901 netHg38,926 netHg38,941 netHg38,966 netHg38,972 netHg38,978 netHg38,985 netHg38,991 netHg38,1055 netHg38,1060 netMm10,97 netMm10,111 netMm10,225 netMm10,233 netMm10,247 netMm10,285 netMm10,307 netMm10,433 netMm10,587 netMm10,622 netMm10,630 netMm10,771 netMm10,849 netMm10,881 netMm10,892 netMm10,901 netMm10,926 netMm10,941 netMm10,966 netMm10,972 netMm10,978 netMm10,985 netMm10,991 netMm10,1055 netMm10,1060 refGene,9 refGene,12 refGene,24 refGene,50 refGene,60 refGene,83 refGene,117 refGene,167 refGene,192 refGene,225 refGene,238 refGene,305 refGene,332 refGene,418 refSeqComposite,8 refSeqComposite,21 refSeqComposite,71 refSeqComposite,109 refSeqComposite,119 refSeqComposite,142 refSeqComposite,191 refSeqComposite,202 refSeqComposite,230 refSeqComposite,256 refSeqComposite,264 refSeqComposite,272 refSeqComposite,300 refSeqComposite,364 refSeqComposite,466 refSeqComposite,490 refSeqComposite,571 refSeqComposite,590 refSeqComposite,653 refSeqComposite,663 refSeqComposite,703 refSeqComposite,715 refSeqComposite,801 refSeqComposite,826 refSeqComposite,859 refSeqComposite,879 refSeqComposite,911 refSeqComposite,953 refSeqComposite,969 refSeqComposite,992 refSeqComposite,1007 refSeqComposite,1124 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1174 refSeqComposite,1273 refSeqComposite,1368 refSeqComposite,1470 refSeqComposite,1488 refSeqComposite,1628 refSeqComposite,1669 refSeqComposite,1719 refSeqComposite,1805 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 tanDups,7 tanDups,84 tanDups,192 tanDups,196 tanDups,224 tanDups,243 tanDups,295 tanDups,314 tanDups,361 tanDups,415 tanDups,474 tanDups,498 tandemDups,13 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,93 transMapEnsemblV5,173 transMapEnsemblV5,198 transMapEnsemblV5,363 transMapEnsemblV5,365 transMapEnsemblV5,389 transMapEnsemblV5,406 transMapEnsemblV5,432 transMapEnsemblV5,463 transMapEnsemblV5,479 transMapEnsemblV5,494 transMapEnsemblV5,551 transMapEnsemblV5,636 transMapEnsemblV5,685 transMapEnsemblV5,699 transMapEnsemblV5,706 transMapEnsemblV5,764 transMapEstV5,9 transMapEstV5,62 transMapEstV5,142 transMapEstV5,167 transMapEstV5,332 transMapEstV5,334 transMapEstV5,358 transMapEstV5,375 transMapEstV5,401 transMapEstV5,432 transMapEstV5,448 transMapEstV5,463 transMapEstV5,520 transMapEstV5,605 transMapEstV5,654 transMapEstV5,668 transMapEstV5,675 transMapEstV5,733 transMapRefSeqV5,10 transMapRefSeqV5,62 transMapRefSeqV5,142 transMapRefSeqV5,167 transMapRefSeqV5,332 transMapRefSeqV5,334 transMapRefSeqV5,358 transMapRefSeqV5,375 transMapRefSeqV5,401 transMapRefSeqV5,432 transMapRefSeqV5,448 transMapRefSeqV5,463 transMapRefSeqV5,520 transMapRefSeqV5,605 transMapRefSeqV5,654 transMapRefSeqV5,668 transMapRefSeqV5,675 transMapRefSeqV5,733 transMapRnaV5,10 transMapRnaV5,62 transMapRnaV5,142 transMapRnaV5,167 transMapRnaV5,332 transMapRnaV5,334 transMapRnaV5,358 transMapRnaV5,375 transMapRnaV5,401 transMapRnaV5,432 transMapRnaV5,448 transMapRnaV5,463 transMapRnaV5,520 transMapRnaV5,605 transMapRnaV5,654 transMapRnaV5,668 transMapRnaV5,675 transMapRnaV5,733 transMapV5,8 transMapV5,16 transMapV5,73 transMapV5,87 transMapV5,138 transMapV5,161 transMapV5,168 transMapV5,248 transMapV5,273 transMapV5,438 transMapV5,440 transMapV5,464 transMapV5,481 transMapV5,507 transMapV5,538 transMapV5,554 transMapV5,569 transMapV5,626 transMapV5,711 transMapV5,760 transMapV5,774 transMapV5,781 transMapV5,839 ucscToINSDC,11 ucscToRefSeq,6 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoMrna,8 xenoMrna,19 xenoMrna,31 xenoMrna,150 xenoMrna,311 xenoMrna,430 xenoMrna,500 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annot unipOther,2 annotate HLTOGAannotvHg38v1,100 annotated HLTOGAannotvHg38v1,133 refSeqComposite,554 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation HLTOGAannotvHg38v1,31 HLTOGAannotvHg38v1,48 HLTOGAannotvHg38v1,358 chainHg38,296 chainMm10,296 chainNetHg38,299 chainNetMm10,299 ensGene,165 evaSnp,262 evaSnp,316 evaSnp,416 evaSnp,698 evaSnp,824 evaSnp,992 evaSnp,1021 evaSnp,1106 evaSnp,1196 evaSnp4,262 evaSnp4,316 evaSnp4,434 evaSnp4,710 evaSnp4,845 evaSnp4,1033 evaSnp4,1062 evaSnp4,1147 evaSnp4,1241 evaSnp5,262 evaSnp5,316 evaSnp5,434 evaSnp5,710 evaSnp5,845 evaSnp5,1033 evaSnp5,1062 evaSnp5,1147 evaSnp5,1241 netHg38,296 netMm10,296 refSeqComposite,66 refSeqComposite,664 refSeqComposite,1113 refSeqComposite,1142 refSeqComposite,1188 rmsk,38 transMapEnsemblV5,606 transMapEstV5,575 transMapRefSeqV5,575 transMapRnaV5,575 transMapV5,681 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations HLTOGAannotvHg38v1,5 ensGene,156 evaSnp,807 evaSnp4,828 evaSnp5,828 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refGene,4 refGene,226 refSeqComposite,190 refSeqComposite,196 refSeqComposite,204 refSeqComposite,219 refSeqComposite,348 refSeqComposite,382 refSeqComposite,480 refSeqComposite,860 refSeqComposite,1466 refSeqComposite,1498 refSeqComposite,1534 transMapEnsemblV5,60 transMapEnsemblV5,539 transMapEnsemblV5,700 transMapEnsemblV5,708 transMapEstV5,508 transMapEstV5,669 transMapEstV5,677 transMapRefSeqV5,508 transMapRefSeqV5,669 transMapRefSeqV5,677 transMapRnaV5,508 transMapRnaV5,669 transMapRnaV5,677 transMapV5,75 transMapV5,614 transMapV5,775 transMapV5,783 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,186 another evaSnp,478 evaSnp,646 evaSnp4,496 evaSnp4,664 evaSnp5,496 evaSnp5,664 refSeqComposite,326 transMapV5,80 any est,313 est,547 evaSnp,251 evaSnp4,251 evaSnp5,251 intronEst,394 intronEst,628 mrna,259 refSeqComposite,273 refSeqComposite,1351 tanDups,99 tanDups,114 uniprot,660 uniprot,1146 uniprot,1250 xenoMrna,334 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 evaSnp,968 evaSnp4,1009 evaSnp5,1009 refSeqComposite,1307 refSeqComposite,1361 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 appear evaSnp,373 evaSnp4,373 evaSnp5,373 tanDups,380 appending transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 apply est,185 intronEst,266 mrna,131 xenoMrna,206 approach uniprot,1531 appropriate refGene,150 refSeqComposite,771 xenoRefGene,110 apr HLTOGAannotvHg38v1,366 est,807 genscan,224 intronEst,891 mrna,524 refGene,350 refSeqComposite,1737 xenoMrna,599 xenoRefGene,309 apsects gc5BaseBw,51 arbitrary refSeqComposite,937 archive ensGene,142 evaSnp,11 evaSnp,36 evaSnp,667 evaSnp,1095 evaSnp,1140 evaSnp4,11 evaSnp4,36 evaSnp4,685 evaSnp4,1136 evaSnp4,1185 evaSnp5,11 evaSnp5,36 evaSnp5,685 evaSnp5,1136 evaSnp5,1185 refSeqComposite,1703 uniprot,893 uniprot,1670 uniprot,1908 archives evaSnp,975 evaSnp4,1016 evaSnp5,1016 refSeqComposite,1342 refSeqComposite,1687 uniprot,1832 are HLTOGAannotvHg38v1,204 HLTOGAannotvHg38v1,277 augustusGene,27 chainHg38,21 chainHg38,40 chainHg38,53 chainHg38,140 chainHg38,208 chainHg38,219 chainHg38,318 chainHg38,387 chainHg38,408 chainHg38,415 chainHg38,498 chainHg38,687 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,140 chainMm10,208 chainMm10,219 chainMm10,318 chainMm10,387 chainMm10,408 chainMm10,415 chainMm10,498 chainMm10,687 chainNetHg38,24 chainNetHg38,43 chainNetHg38,56 chainNetHg38,143 chainNetHg38,211 chainNetHg38,222 chainNetHg38,321 chainNetHg38,390 chainNetHg38,411 chainNetHg38,418 chainNetHg38,501 chainNetHg38,690 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,143 chainNetMm10,211 chainNetMm10,222 chainNetMm10,321 chainNetMm10,390 chainNetMm10,411 chainNetMm10,418 chainNetMm10,501 chainNetMm10,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 est,27 est,64 est,146 est,156 evaSnp,62 evaSnp,100 evaSnp,114 evaSnp,127 evaSnp,150 evaSnp,401 evaSnp,455 evaSnp,595 evaSnp,835 evaSnp4,62 evaSnp4,100 evaSnp4,114 evaSnp4,127 evaSnp4,150 evaSnp4,419 evaSnp4,473 evaSnp4,613 evaSnp4,856 evaSnp5,62 evaSnp5,100 evaSnp5,114 evaSnp5,127 evaSnp5,150 evaSnp5,419 evaSnp5,473 evaSnp5,613 evaSnp5,856 gap,23 gap,68 gap,128 genscan,25 genscan,160 gold,25 gold,83 gold,100 intronEst,39 intronEst,227 intronEst,237 intronEst,800 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netHg38,21 netHg38,40 netHg38,53 netHg38,140 netHg38,208 netHg38,219 netHg38,318 netHg38,387 netHg38,408 netHg38,415 netHg38,498 netHg38,687 netMm10,21 netMm10,40 netMm10,53 netMm10,140 netMm10,208 netMm10,219 netMm10,318 netMm10,387 netMm10,408 netMm10,415 netMm10,498 netMm10,687 refGene,41 refGene,143 refGene,241 refSeqComposite,179 refSeqComposite,232 refSeqComposite,406 refSeqComposite,427 refSeqComposite,764 refSeqComposite,889 refSeqComposite,931 refSeqComposite,995 refSeqComposite,1022 refSeqComposite,1338 refSeqComposite,1372 refSeqComposite,1395 refSeqComposite,1473 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 tanDups,11 tanDups,308 tanDups,377 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,451 transMapEnsemblV5,458 transMapEnsemblV5,467 transMapEnsemblV5,501 transMapEnsemblV5,511 transMapEnsemblV5,540 transMapEnsemblV5,579 transMapEstV5,42 transMapEstV5,420 transMapEstV5,427 transMapEstV5,436 transMapEstV5,470 transMapEstV5,480 transMapEstV5,509 transMapEstV5,548 transMapRefSeqV5,42 transMapRefSeqV5,420 transMapRefSeqV5,427 transMapRefSeqV5,436 transMapRefSeqV5,470 transMapRefSeqV5,480 transMapRefSeqV5,509 transMapRefSeqV5,548 transMapRnaV5,42 transMapRnaV5,420 transMapRnaV5,427 transMapRnaV5,436 transMapRnaV5,470 transMapRnaV5,480 transMapRnaV5,509 transMapRnaV5,548 transMapV5,41 transMapV5,68 transMapV5,526 transMapV5,533 transMapV5,542 transMapV5,576 transMapV5,586 transMapV5,615 transMapV5,654 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoMrna,50 xenoMrna,116 xenoMrna,167 xenoMrna,177 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arg evaSnp,877 evaSnp,887 evaSnp4,899 evaSnp4,909 evaSnp5,899 evaSnp5,909 arian chainHg38,939 chainMm10,939 chainNetHg38,942 chainNetMm10,942 nestedRepeats,305 netHg38,939 netMm10,939 rmsk,16 rmsk,328 armstrong tanDups,473 around tanDups,64 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1101 as HLTOGAannotvHg38v1,9 HLTOGAannotvHg38v1,37 HLTOGAannotvHg38v1,42 HLTOGAannotvHg38v1,141 HLTOGAannotvHg38v1,199 HLTOGAannotvHg38v1,259 augustusGene,77 augustusGene,79 chainHg38,460 chainHg38,500 chainHg38,523 chainHg38,538 chainHg38,798 chainHg38,853 chainHg38,911 chainMm10,460 chainMm10,500 chainMm10,523 chainMm10,538 chainMm10,798 chainMm10,853 chainMm10,911 chainNetHg38,463 chainNetHg38,503 chainNetHg38,526 chainNetHg38,541 chainNetHg38,801 chainNetHg38,856 chainNetHg38,914 chainNetMm10,463 chainNetMm10,503 chainNetMm10,526 chainNetMm10,541 chainNetMm10,801 chainNetMm10,856 chainNetMm10,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 est,594 evaSnp,64 evaSnp,116 evaSnp,237 evaSnp,256 evaSnp,525 evaSnp,575 evaSnp,1039 evaSnp,1170 evaSnp,1186 evaSnp4,64 evaSnp4,116 evaSnp4,237 evaSnp4,256 evaSnp4,543 evaSnp4,593 evaSnp4,1080 evaSnp4,1153 evaSnp4,1155 evaSnp4,1215 evaSnp4,1231 evaSnp5,64 evaSnp5,116 evaSnp5,237 evaSnp5,256 evaSnp5,543 evaSnp5,593 evaSnp5,1080 evaSnp5,1153 evaSnp5,1155 evaSnp5,1215 evaSnp5,1231 gap,70 genscan,35 genscan,37 intronEst,675 microsat,21 nestedRepeats,125 netHg38,460 netHg38,500 netHg38,523 netHg38,538 netHg38,798 netHg38,853 netHg38,911 netMm10,460 netMm10,500 netMm10,523 netMm10,538 netMm10,798 netMm10,853 netMm10,911 refSeqComposite,413 refSeqComposite,502 refSeqComposite,522 refSeqComposite,535 refSeqComposite,622 refSeqComposite,890 refSeqComposite,1219 refSeqComposite,1400 refSeqComposite,1516 refSeqComposite,1636 rmsk,53 rmsk,55 tanDups,367 transMapEnsemblV5,65 transMapEnsemblV5,187 transMapEnsemblV5,213 transMapEnsemblV5,225 transMapEnsemblV5,513 transMapEnsemblV5,624 transMapEstV5,156 transMapEstV5,182 transMapEstV5,194 transMapEstV5,482 transMapEstV5,593 transMapRefSeqV5,156 transMapRefSeqV5,182 transMapRefSeqV5,194 transMapRefSeqV5,482 transMapRefSeqV5,593 transMapRnaV5,156 transMapRnaV5,182 transMapRnaV5,194 transMapRnaV5,482 transMapRnaV5,593 transMapV5,262 transMapV5,288 transMapV5,300 transMapV5,588 transMapV5,699 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 xenoMrna,123 xenoMrna,128 ascii uniprot,1762 ask refGene,63 refSeqComposite,122 aspect refSeqComposite,705 assemblies augustusGene,196 augustusGene,237 chainHg38,317 chainHg38,579 chainMm10,317 chainMm10,579 chainNetHg38,320 chainNetHg38,582 chainNetMm10,320 chainNetMm10,582 evaSnp,924 evaSnp,934 evaSnp4,965 evaSnp4,975 evaSnp5,965 evaSnp5,975 gap,153 netHg38,317 netHg38,579 netMm10,317 netMm10,579 refSeqComposite,183 rmsk,107 tanDups,88 tanDups,495 transMapEnsemblV5,192 transMapEstV5,161 transMapRefSeqV5,161 transMapRnaV5,161 transMapV5,267 assembly HLTOGAannotvHg38v1,209 augustusGene,197 chainHg38,149 chainHg38,156 chainHg38,304 chainMm10,149 chainMm10,156 chainMm10,304 chainNetHg38,152 chainNetHg38,159 chainNetHg38,307 chainNetMm10,152 chainNetMm10,159 chainNetMm10,307 evaSnp,678 evaSnp4,696 evaSnp5,696 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 netHg38,149 netHg38,156 netHg38,304 netMm10,149 netMm10,156 netMm10,304 refSeqComposite,370 refSeqComposite,476 tanDups,40 tanDups,147 tanDups,160 tandemDups,11 transMapV5,105 transMapV5,123 transMapV5,134 ucscToINSDC,40 ucscToRefSeq,34 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,649 assigned evaSnp,650 evaSnp4,668 evaSnp5,668 transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 est,107 evaSnp,868 evaSnp4,889 evaSnp5,889 gc5BaseBw,34 intronEst,188 refSeqComposite,1396 rmsk,224 simpleRepeat,51 transMapEnsemblV5,580 transMapEstV5,549 transMapRefSeqV5,549 transMapRnaV5,549 transMapV5,655 uniprot,787 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,681 astashyn refGene,366 refSeqComposite,1753 xenoRefGene,325 at HLTOGAannotvHg38v1,362 chainHg38,417 chainHg38,793 chainHg38,915 chainHg38,950 chainHg38,955 chainHg38,996 chainMm10,417 chainMm10,793 chainMm10,915 chainMm10,950 chainMm10,955 chainMm10,996 chainNetHg38,420 chainNetHg38,796 chainNetHg38,918 chainNetHg38,953 chainNetHg38,958 chainNetHg38,999 chainNetMm10,420 chainNetMm10,796 chainNetMm10,918 chainNetMm10,953 chainNetMm10,958 chainNetMm10,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 est,262 est,546 est,591 est,710 est,726 evaSnp,48 evaSnp,68 evaSnp,76 evaSnp4,48 evaSnp4,68 evaSnp4,76 evaSnp5,48 evaSnp5,68 evaSnp5,76 intronEst,65 intronEst,80 intronEst,105 intronEst,343 intronEst,627 intronEst,672 intronEst,791 intronEst,810 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netHg38,417 netHg38,793 netHg38,915 netHg38,950 netHg38,955 netHg38,996 netMm10,417 netMm10,793 netMm10,915 netMm10,950 netMm10,955 netMm10,996 refGene,131 refGene,306 refGene,322 refSeqComposite,731 refSeqComposite,1046 refSeqComposite,1150 refSeqComposite,1274 refSeqComposite,1711 rmsk,243 rmsk,267 tanDups,135 tanDups,236 tanDups,246 tanDups,290 tanDups,362 tanDups,403 tanDups,420 tanDups,482 transMapEnsemblV5,293 transMapEnsemblV5,681 transMapEstV5,262 transMapEstV5,650 transMapRefSeqV5,262 transMapRefSeqV5,650 transMapRnaV5,262 transMapRnaV5,650 transMapV5,117 transMapV5,368 transMapV5,756 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoMrna,283 xenoMrna,501 xenoMrna,518 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 attempt est,578 intronEst,659 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated evaSnp,958 evaSnp,987 evaSnp4,999 evaSnp4,1028 evaSnp5,999 evaSnp5,1028 transMapEnsemblV5,536 transMapEstV5,505 transMapRefSeqV5,505 transMapRnaV5,505 transMapV5,611 uniprot,1468 uniprot,1727 automatically evaSnp,143 evaSnp4,143 evaSnp5,143 uniprot,1565 av uniprot,2015 available HLTOGAannotvHg38v1,329 augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 evaSnp,324 evaSnp4,324 evaSnp4,396 evaSnp4,726 evaSnp5,324 evaSnp5,396 evaSnp5,726 nestedRepeats,259 nestedRepeats,276 refSeqComposite,180 refSeqComposite,276 refSeqComposite,473 refSeqComposite,565 refSeqComposite,650 refSeqComposite,1339 refSeqComposite,1591 rmsk,73 tanDups,397 tanDups,402 transMapEnsemblV5,188 transMapEnsemblV5,245 transMapEstV5,157 transMapEstV5,214 transMapRefSeqV5,157 transMapRefSeqV5,214 transMapRnaV5,157 transMapRnaV5,214 transMapV5,263 transMapV5,320 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aw HLTOGAannotvHg38v1,349 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainHg38,600 chainHg38,607 chainMm10,600 chainMm10,607 chainNetHg38,603 chainNetHg38,610 chainNetMm10,603 chainNetMm10,610 netHg38,600 netHg38,607 netMm10,600 netMm10,607 axtchain chainHg38,612 chainHg38,698 chainHg38,946 chainMm10,612 chainMm10,698 chainMm10,946 chainNetHg38,615 chainNetHg38,701 chainNetHg38,949 chainNetMm10,615 chainNetMm10,701 chainNetMm10,949 netHg38,612 netHg38,698 netHg38,946 netMm10,612 netMm10,698 netMm10,946 b evaSnp,1122 evaSnp,1176 evaSnp4,1167 evaSnp4,1221 evaSnp5,1167 evaSnp5,1221 transMapEnsemblV5,717 transMapEnsemblV5,727 transMapEstV5,686 transMapEstV5,696 transMapRefSeqV5,686 transMapRefSeqV5,696 transMapRnaV5,686 transMapRnaV5,696 transMapV5,792 transMapV5,802 back chainHg38,592 chainMm10,592 chainNetHg38,595 chainNetMm10,595 netHg38,592 netMm10,592 baertsch augustusGene,290 chainHg38,984 chainHg38,1042 chainHg38,1088 chainMm10,984 chainMm10,1042 chainMm10,1088 chainNetHg38,987 chainNetHg38,1045 chainNetHg38,1091 chainNetMm10,987 chainNetMm10,1045 chainNetMm10,1091 netHg38,984 netHg38,1042 netHg38,1088 netMm10,984 netMm10,1042 netMm10,1088 transMapEnsemblV5,758 transMapEstV5,727 transMapRefSeqV5,727 transMapRnaV5,727 transMapV5,833 bairoch uniprot,2022 band cytoBandIdeo,2 barker ensGene,170 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 est,383 est,417 est,693 est,701 est,713 evaSnp,122 evaSnp4,122 evaSnp5,122 intronEst,464 intronEst,498 intronEst,774 intronEst,782 intronEst,794 mrna,356 mrna,409 mrna,417 mrna,429 refGene,289 refGene,297 refGene,309 refSeqComposite,1257 refSeqComposite,1265 refSeqComposite,1277 rmsk,217 rmsk,219 rmsk,222 tanDups,172 tanDups,266 tanDups,293 tanDups,365 tanDups,412 tanDups,423 tanDups,433 tanDups,441 tanDups,450 xenoMrna,431 xenoMrna,483 xenoMrna,492 xenoMrna,504 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 base-level evaSnp,79 evaSnp4,79 evaSnp5,79 transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 based augustusGene,28 chainHg38,320 chainHg38,346 chainMm10,320 chainMm10,346 chainNetHg38,323 chainNetHg38,349 chainNetMm10,323 chainNetMm10,349 evaSnp,836 evaSnp4,857 evaSnp5,857 genscan,26 netHg38,320 netHg38,346 netMm10,320 netMm10,346 refSeqComposite,251 refSeqComposite,359 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 est,33 est,394 est,666 evaSnp,137 evaSnp4,137 evaSnp5,137 gap,146 gap,161 gc5BaseBw,25 intronEst,45 intronEst,83 intronEst,475 intronEst,747 refSeqComposite,897 tanDups,177 tanDups,190 tanDups,276 tanDups,300 tanDups,351 transMapV5,165 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bbi evaSnp,1077 evaSnp4,1118 evaSnp5,1118 bc149621.1 transMapEnsemblV5,456 transMapEstV5,425 transMapRefSeqV5,425 transMapRnaV5,425 transMapV5,531 bc149621.1-1 transMapEnsemblV5,462 transMapEnsemblV5,473 transMapEstV5,431 transMapEstV5,442 transMapRefSeqV5,431 transMapRefSeqV5,442 transMapRnaV5,431 transMapRnaV5,442 transMapV5,537 transMapV5,548 bc149621.1-1.1 transMapEnsemblV5,484 transMapEstV5,453 transMapRefSeqV5,453 transMapRnaV5,453 transMapV5,559 bc149621.1-2 transMapEnsemblV5,464 transMapEnsemblV5,486 transMapEstV5,433 transMapEstV5,455 transMapRefSeqV5,433 transMapRefSeqV5,455 transMapRnaV5,433 transMapRnaV5,455 transMapV5,539 transMapV5,561 bc149621.1-2.1 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 bc149621.1-2.2 transMapEnsemblV5,495 transMapEstV5,464 transMapRefSeqV5,464 transMapRnaV5,464 transMapV5,570 be augustusGene,99 chainHg38,106 chainHg38,427 chainMm10,106 chainMm10,427 chainNetHg38,109 chainNetHg38,430 chainNetMm10,109 chainNetMm10,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 est,106 est,119 est,141 est,250 est,260 est,271 est,302 est,320 est,330 est,379 est,430 est,526 est,634 evaSnp,185 evaSnp,266 evaSnp,343 evaSnp,357 evaSnp,421 evaSnp,523 evaSnp,573 evaSnp,649 evaSnp,872 evaSnp,886 evaSnp,936 evaSnp,946 evaSnp,963 evaSnp,1001 evaSnp,1023 evaSnp,1031 evaSnp,1054 evaSnp,1061 evaSnp4,185 evaSnp4,266 evaSnp4,343 evaSnp4,357 evaSnp4,439 evaSnp4,541 evaSnp4,591 evaSnp4,667 evaSnp4,893 evaSnp4,908 evaSnp4,977 evaSnp4,987 evaSnp4,1004 evaSnp4,1042 evaSnp4,1064 evaSnp4,1072 evaSnp4,1095 evaSnp4,1102 evaSnp5,185 evaSnp5,266 evaSnp5,343 evaSnp5,357 evaSnp5,439 evaSnp5,541 evaSnp5,591 evaSnp5,667 evaSnp5,893 evaSnp5,908 evaSnp5,977 evaSnp5,987 evaSnp5,1004 evaSnp5,1042 evaSnp5,1064 evaSnp5,1072 evaSnp5,1095 evaSnp5,1102 gap,133 gc5BaseBw,41 intronEst,56 intronEst,79 intronEst,187 intronEst,200 intronEst,222 intronEst,331 intronEst,341 intronEst,352 intronEst,383 intronEst,401 intronEst,411 intronEst,460 intronEst,511 intronEst,607 intronEst,715 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netHg38,106 netHg38,427 netMm10,106 netMm10,427 refGene,126 refSeqComposite,303 refSeqComposite,725 refSeqComposite,935 refSeqComposite,966 refSeqComposite,1026 refSeqComposite,1103 refSeqComposite,1191 refSeqComposite,1294 refSeqComposite,1301 refSeqComposite,1317 refSeqComposite,1389 refSeqComposite,1449 refSeqComposite,1480 refSeqComposite,1500 refSeqComposite,1508 refSeqComposite,1582 refSeqComposite,1604 refSeqComposite,1674 refSeqComposite,1699 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 tanDups,91 tanDups,335 tanDups,391 transMapEnsemblV5,63 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,524 transMapEnsemblV5,553 transMapEnsemblV5,608 transMapEnsemblV5,616 transMapEnsemblV5,639 transMapEnsemblV5,646 transMapEstV5,78 transMapEstV5,113 transMapEstV5,493 transMapEstV5,522 transMapEstV5,577 transMapEstV5,585 transMapEstV5,608 transMapEstV5,615 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,493 transMapRefSeqV5,522 transMapRefSeqV5,577 transMapRefSeqV5,585 transMapRefSeqV5,608 transMapRefSeqV5,615 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,493 transMapRnaV5,522 transMapRnaV5,577 transMapRnaV5,585 transMapRnaV5,608 transMapRnaV5,615 transMapV5,184 transMapV5,219 transMapV5,599 transMapV5,628 transMapV5,683 transMapV5,691 transMapV5,714 transMapV5,721 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoMrna,140 xenoMrna,162 xenoMrna,271 xenoMrna,281 xenoMrna,292 xenoMrna,323 xenoMrna,341 xenoMrna,351 xenoMrna,400 xenoMrna,444 xenoRefGene,86 bears est,91 intronEst,172 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 est,626 intronEst,707 uniprot,674 xenoMrna,102 bed evaSnp,800 evaSnp4,821 evaSnp5,821 bed3 windowmaskerSdust,76 been chainHg38,568 chainMm10,568 chainNetHg38,571 chainNetMm10,571 evaSnp,656 evaSnp4,674 evaSnp5,674 intronEst,7 nestedRepeats,89 netHg38,568 netMm10,568 refSeqComposite,635 refSeqComposite,673 refSeqComposite,683 refSeqComposite,698 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainHg38,900 chainMm10,900 chainNetHg38,903 chainNetMm10,903 est,563 intronEst,644 netHg38,900 netMm10,900 tanDups,129 tanDups,191 uniprot,934 began tanDups,56 begin refSeqComposite,222 refSeqComposite,351 beginning refSeqComposite,1048 refSeqComposite,1645 tanDups,137 begins tanDups,244 beloow refSeqComposite,337 below chainHg38,674 chainMm10,674 chainNetHg38,677 chainNetMm10,677 ensGene,54 evaSnp,427 evaSnp4,445 evaSnp5,445 genscan,154 genscan,168 nestedRepeats,68 netHg38,674 netMm10,674 refSeqComposite,1391 refSeqComposite,1528 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benedict tanDups,475 benson est,743 est,771 intronEst,827 intronEst,855 microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,535 xenoMrna,563 best chainHg38,265 chainHg38,510 chainMm10,265 chainMm10,510 chainNetHg38,268 chainNetHg38,513 chainNetMm10,268 chainNetMm10,513 est,708 intronEst,789 mrna,424 netHg38,265 netHg38,510 netMm10,265 netMm10,510 refGene,304 refSeqComposite,1272 transMapEnsemblV5,240 transMapEstV5,209 transMapRefSeqV5,209 transMapRnaV5,209 transMapV5,66 transMapV5,315 uniprot,1074 uniprot,1415 xenoMrna,499 xenoRefGene,264 beta uniprot,364 better est,71 mrna,52 xenoMrna,57 between HLTOGAannotvHg38v1,66 chainHg38,51 chainHg38,617 chainHg38,847 chainMm10,51 chainMm10,617 chainMm10,847 chainNetHg38,54 chainNetHg38,620 chainNetHg38,850 chainNetMm10,54 chainNetMm10,620 chainNetMm10,850 est,15 est,82 evaSnp,108 evaSnp,923 evaSnp,933 evaSnp4,108 evaSnp4,964 evaSnp4,974 evaSnp5,108 evaSnp5,964 evaSnp5,974 gap,149 gold,97 gold,102 intronEst,17 intronEst,74 intronEst,163 mrna,16 ncbiRefSeqGenomicDiff,4 netHg38,51 netHg38,617 netHg38,847 netMm10,51 netMm10,617 netMm10,847 refSeqComposite,64 refSeqComposite,460 refSeqComposite,874 tanDups,164 tanDups,318 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed evaSnp,803 evaSnp,997 evaSnp4,824 evaSnp4,1038 evaSnp5,824 evaSnp5,1038 refSeqComposite,1375 refSeqComposite,1386 refSeqComposite,1476 uniprot,1736 bigbedtobed evaSnp,1028 evaSnp,1072 evaSnp4,1069 evaSnp4,1113 evaSnp5,1069 evaSnp5,1113 refSeqComposite,1505 refSeqComposite,1545 transMapEnsemblV5,613 transMapEnsemblV5,658 transMapEstV5,582 transMapEstV5,627 transMapRefSeqV5,582 transMapRefSeqV5,627 transMapRnaV5,582 transMapRnaV5,627 transMapV5,688 transMapV5,733 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,543 transMapEstV5,512 transMapRefSeqV5,512 transMapRnaV5,512 transMapV5,618 bin refSeqComposite,1431 refSeqComposite,1461 binaries evaSnp,1052 evaSnp4,1093 evaSnp5,1093 transMapEnsemblV5,637 transMapEstV5,606 transMapRefSeqV5,606 transMapRnaV5,606 transMapV5,712 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 evaSnp,1042 evaSnp4,1083 evaSnp5,1083 refSeqComposite,1519 transMapEnsemblV5,627 transMapEstV5,596 transMapRefSeqV5,596 transMapRnaV5,596 transMapV5,702 uniprot,1781 bins evaSnp,292 evaSnp,419 evaSnp4,292 evaSnp4,437 evaSnp5,292 evaSnp5,437 biocomput chainHg38,1035 chainMm10,1035 chainNetHg38,1038 chainNetMm10,1038 netHg38,1035 netMm10,1035 bioinformatics augustusGene,307 augustusGene,332 evaSnp,1198 evaSnp4,1243 evaSnp5,1243 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 biological uniprot,320 biology genscan,200 birds HLTOGAannotvHg38v1,60 augustusGene,203 birney ensGene,172 bj evaSnp,1172 evaSnp4,1217 evaSnp5,1217 black gap,71 gap,110 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like est,801 intronEst,885 mrna,518 refGene,344 refSeqComposite,1731 xenoMrna,593 xenoRefGene,303 blastz chainHg38,912 chainHg38,1099 chainMm10,912 chainMm10,1099 chainNetHg38,915 chainNetHg38,1102 chainNetMm10,915 chainNetMm10,1102 netHg38,912 netHg38,1099 netMm10,912 netMm10,1099 transMapEnsemblV5,78 transMapEnsemblV5,195 transMapEstV5,47 transMapEstV5,164 transMapRefSeqV5,47 transMapRefSeqV5,164 transMapRnaV5,47 transMapRnaV5,164 transMapV5,48 transMapV5,143 transMapV5,270 blat est,653 est,662 est,799 intronEst,734 intronEst,743 intronEst,883 mrna,394 mrna,516 refGene,265 refGene,342 refSeqComposite,1233 refSeqComposite,1729 tanDups,203 tanDups,205 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,125 transMapV5,149 transMapV5,156 transMapV5,241 xenoMrna,15 xenoMrna,469 xenoMrna,591 xenoRefGene,225 blat--the xenoRefGene,302 block evaSnp,131 evaSnp4,131 evaSnp5,131 blocks chainHg38,44 chainHg38,639 chainHg38,660 chainMm10,44 chainMm10,639 chainMm10,660 chainNetHg38,47 chainNetHg38,642 chainNetHg38,663 chainNetMm10,47 chainNetMm10,642 chainNetMm10,663 gold,107 gold,134 intronEst,77 netHg38,44 netHg38,639 netHg38,660 netMm10,44 netMm10,639 netMm10,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 blumer HLTOGAannotvHg38v1,344 bm HLTOGAannotvHg38v1,335 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 bostau9 evaSnp4,920 evaSnp5,920 both chainHg38,95 chainHg38,115 chainHg38,168 chainHg38,890 chainMm10,95 chainMm10,115 chainMm10,168 chainMm10,890 chainNetHg38,98 chainNetHg38,118 chainNetHg38,171 chainNetHg38,893 chainNetMm10,98 chainNetMm10,118 chainNetMm10,171 chainNetMm10,893 evaSnp,501 evaSnp,551 evaSnp4,519 evaSnp4,569 evaSnp5,519 evaSnp5,569 netHg38,95 netHg38,115 netHg38,168 netHg38,890 netMm10,95 netMm10,115 netMm10,168 netMm10,890 refGene,164 refGene,235 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 uniprot,675 uniprot,1616 xenoRefGene,124 xenoRefGene,195 bothgap chainHg38,741 chainMm10,741 chainNetHg38,744 chainNetMm10,744 netHg38,741 netMm10,741 boundaries HLTOGAannotvHg38v1,111 gold,82 box chainHg38,370 chainHg38,452 chainMm10,370 chainMm10,452 chainNetHg38,373 chainNetHg38,455 chainNetMm10,373 chainNetMm10,455 est,205 est,216 est,256 evaSnp,203 evaSnp4,203 evaSnp5,203 gap,111 intronEst,286 intronEst,297 intronEst,337 mrna,151 mrna,162 mrna,202 netHg38,370 netHg38,452 netMm10,370 netMm10,452 refGene,254 xenoMrna,226 xenoMrna,237 xenoMrna,277 xenoRefGene,214 boxes chainHg38,121 chainHg38,131 chainHg38,441 chainMm10,121 chainMm10,131 chainMm10,441 chainNetHg38,124 chainNetHg38,134 chainNetHg38,444 chainNetMm10,124 chainNetMm10,134 chainNetMm10,444 est,176 gap,72 intronEst,257 mrna,122 nestedRepeats,126 netHg38,121 netHg38,131 netHg38,441 netMm10,121 netMm10,131 netMm10,441 refSeqComposite,165 xenoMrna,197 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 evaSnp,166 evaSnp4,166 evaSnp5,166 refSeqComposite,942 branch transMapEnsemblV5,218 transMapEstV5,187 transMapRefSeqV5,187 transMapRnaV5,187 transMapV5,293 branch-point augustusGene,55 brejov transMapEnsemblV5,715 transMapEstV5,684 transMapRefSeqV5,684 transMapRnaV5,684 transMapV5,790 brian uniprot,1959 bridge gold,132 bridged gap,100 briefly uniprot,778 brown gold,92 gold,106 refGene,360 refSeqComposite,1747 xenoRefGene,319 browser chainHg38,970 chainMm10,970 chainNetHg38,973 chainNetMm10,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 est,223 est,347 est,364 evaSnp,206 evaSnp,952 evaSnp4,206 evaSnp4,993 evaSnp5,206 evaSnp5,993 intronEst,304 intronEst,428 intronEst,445 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netHg38,970 netMm10,970 refSeqComposite,1121 refSeqComposite,1183 refSeqComposite,1309 refSeqComposite,1446 transMapEnsemblV5,37 transMapEnsemblV5,164 transMapEnsemblV5,530 transMapEstV5,35 transMapEstV5,133 transMapEstV5,499 transMapRefSeqV5,35 transMapRefSeqV5,133 transMapRefSeqV5,499 transMapRnaV5,35 transMapRnaV5,133 transMapRnaV5,499 transMapV5,34 transMapV5,239 transMapV5,605 ucscToINSDC,19 ucscToRefSeq,14 uniprot,1544 uniprot,1721 xenoMrna,244 xenoMrna,368 xenoMrna,385 browsing uniprot,1662 build refSeqComposite,299 uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but HLTOGAannotvHg38v1,194 HLTOGAannotvHg38v1,249 chainHg38,543 chainMm10,543 chainNetHg38,546 chainNetMm10,546 est,483 est,540 est,593 intronEst,564 intronEst,621 intronEst,674 netHg38,543 netMm10,543 refSeqComposite,426 refSeqComposite,895 refSeqComposite,1028 refSeqComposite,1447 rmsk,311 tanDups,398 uniprot,638 uniprot,1047 button chainHg38,341 chainMm10,341 chainNetHg38,344 chainNetMm10,344 netHg38,341 netMm10,341 by HLTOGAannotvHg38v1,319 augustusGene,147 augustusGene,266 augustusGene,282 chainHg38,108 chainHg38,124 chainHg38,311 chainHg38,374 chainHg38,411 chainHg38,429 chainHg38,807 chainHg38,919 chainHg38,938 chainHg38,958 chainHg38,982 chainHg38,1003 chainMm10,108 chainMm10,124 chainMm10,311 chainMm10,374 chainMm10,411 chainMm10,429 chainMm10,807 chainMm10,919 chainMm10,938 chainMm10,958 chainMm10,982 chainMm10,1003 chainNetHg38,111 chainNetHg38,127 chainNetHg38,314 chainNetHg38,377 chainNetHg38,414 chainNetHg38,432 chainNetHg38,810 chainNetHg38,922 chainNetHg38,941 chainNetHg38,961 chainNetHg38,985 chainNetHg38,1006 chainNetMm10,111 chainNetMm10,127 chainNetMm10,314 chainNetMm10,377 chainNetMm10,414 chainNetMm10,432 chainNetMm10,810 chainNetMm10,922 chainNetMm10,941 chainNetMm10,961 chainNetMm10,985 chainNetMm10,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 est,265 est,493 est,661 est,739 evaSnp,102 evaSnp,129 evaSnp,187 evaSnp,239 evaSnp,258 evaSnp,278 evaSnp,289 evaSnp,363 evaSnp,457 evaSnp,477 evaSnp,622 evaSnp,810 evaSnp4,102 evaSnp4,129 evaSnp4,187 evaSnp4,239 evaSnp4,258 evaSnp4,278 evaSnp4,289 evaSnp4,363 evaSnp4,475 evaSnp4,495 evaSnp4,640 evaSnp4,728 evaSnp4,831 evaSnp5,102 evaSnp5,129 evaSnp5,187 evaSnp5,239 evaSnp5,258 evaSnp5,278 evaSnp5,289 evaSnp5,363 evaSnp5,475 evaSnp5,495 evaSnp5,640 evaSnp5,728 evaSnp5,831 gap,93 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,85 intronEst,91 intronEst,346 intronEst,574 intronEst,742 intronEst,823 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netHg38,108 netHg38,124 netHg38,311 netHg38,374 netHg38,411 netHg38,429 netHg38,807 netHg38,919 netHg38,938 netHg38,958 netHg38,982 netHg38,1003 netMm10,108 netMm10,124 netMm10,311 netMm10,374 netMm10,411 netMm10,429 netMm10,807 netMm10,919 netMm10,938 netMm10,958 netMm10,982 netMm10,1003 refGene,140 refGene,145 refGene,209 refGene,227 refGene,233 refGene,329 refGene,334 refSeqComposite,38 refSeqComposite,49 refSeqComposite,69 refSeqComposite,206 refSeqComposite,371 refSeqComposite,384 refSeqComposite,444 refSeqComposite,555 refSeqComposite,624 refSeqComposite,637 refSeqComposite,641 refSeqComposite,685 refSeqComposite,761 refSeqComposite,766 refSeqComposite,843 refSeqComposite,861 refSeqComposite,1200 refSeqComposite,1716 refSeqComposite,1721 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 tanDups,186 tanDups,505 transMapEnsemblV5,23 transMapEnsemblV5,227 transMapEnsemblV5,395 transMapEnsemblV5,678 transMapEnsemblV5,696 transMapEnsemblV5,702 transMapEnsemblV5,740 transMapEstV5,21 transMapEstV5,196 transMapEstV5,364 transMapEstV5,647 transMapEstV5,665 transMapEstV5,671 transMapEstV5,709 transMapRefSeqV5,21 transMapRefSeqV5,196 transMapRefSeqV5,364 transMapRefSeqV5,647 transMapRefSeqV5,665 transMapRefSeqV5,671 transMapRefSeqV5,709 transMapRnaV5,21 transMapRnaV5,196 transMapRnaV5,364 transMapRnaV5,647 transMapRnaV5,665 transMapRnaV5,671 transMapRnaV5,709 transMapV5,20 transMapV5,302 transMapV5,470 transMapV5,753 transMapV5,771 transMapV5,777 transMapV5,815 ucscToINSDC,50 ucscToRefSeq,44 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoMrna,286 xenoMrna,531 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c HLTOGAannotvHg38v1,337 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,913 refSeqComposite,954 refSeqComposite,981 refSeqComposite,1040 refSeqComposite,1067 refSeqComposite,1079 tanDups,278 transMapEnsemblV5,725 transMapEnsemblV5,731 transMapEstV5,694 transMapEstV5,700 transMapRefSeqV5,694 transMapRefSeqV5,700 transMapRnaV5,694 transMapRnaV5,700 transMapV5,800 transMapV5,806 windowmaskerSdust,30 c-114100-125-31 chainHg38,669 chainMm10,669 chainNetHg38,672 chainNetMm10,672 netHg38,669 netMm10,669 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainHg38,954 chainHg38,1000 chainMm10,954 chainMm10,1000 chainNetHg38,957 chainNetHg38,1003 chainNetMm10,957 chainNetMm10,1003 netHg38,954 netHg38,1000 netMm10,954 netMm10,1000 called evaSnp,1013 evaSnp4,1054 evaSnp5,1054 cameron ensGene,174 can augustusGene,98 chainHg38,90 chainHg38,105 chainMm10,90 chainMm10,105 chainNetHg38,93 chainNetHg38,108 chainNetMm10,93 chainNetMm10,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 est,118 est,249 evaSnp,184 evaSnp,265 evaSnp,420 evaSnp,648 evaSnp,935 evaSnp,945 evaSnp,1000 evaSnp,1022 evaSnp,1030 evaSnp,1053 evaSnp,1059 evaSnp4,184 evaSnp4,265 evaSnp4,438 evaSnp4,666 evaSnp4,976 evaSnp4,986 evaSnp4,1041 evaSnp4,1063 evaSnp4,1071 evaSnp4,1094 evaSnp4,1100 evaSnp5,184 evaSnp5,265 evaSnp5,438 evaSnp5,666 evaSnp5,976 evaSnp5,986 evaSnp5,1041 evaSnp5,1063 evaSnp5,1071 evaSnp5,1094 evaSnp5,1100 gap,132 intronEst,199 intronEst,330 mrna,64 mrna,195 netHg38,90 netHg38,105 netMm10,90 netMm10,105 refGene,125 refSeqComposite,286 refSeqComposite,724 refSeqComposite,1102 refSeqComposite,1190 refSeqComposite,1293 refSeqComposite,1300 refSeqComposite,1315 refSeqComposite,1348 refSeqComposite,1388 refSeqComposite,1448 refSeqComposite,1456 refSeqComposite,1479 refSeqComposite,1499 refSeqComposite,1507 refSeqComposite,1560 refSeqComposite,1580 refSeqComposite,1603 refSeqComposite,1673 refSeqComposite,1698 rmsk,116 simpleRepeat,35 tanDups,89 tanDups,168 tanDups,333 transMapEnsemblV5,523 transMapEnsemblV5,552 transMapEnsemblV5,607 transMapEnsemblV5,615 transMapEnsemblV5,638 transMapEnsemblV5,644 transMapEstV5,492 transMapEstV5,521 transMapEstV5,576 transMapEstV5,584 transMapEstV5,607 transMapEstV5,613 transMapRefSeqV5,492 transMapRefSeqV5,521 transMapRefSeqV5,576 transMapRefSeqV5,584 transMapRefSeqV5,607 transMapRefSeqV5,613 transMapRnaV5,492 transMapRnaV5,521 transMapRnaV5,576 transMapRnaV5,584 transMapRnaV5,607 transMapRnaV5,613 transMapV5,598 transMapV5,627 transMapV5,682 transMapV5,690 transMapV5,713 transMapV5,719 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoMrna,139 xenoMrna,270 xenoRefGene,85 cannot uniprot,1269 canonical intronEst,68 cap-selected est,556 intronEst,637 cap-selection est,565 intronEst,646 cases chainHg38,190 chainHg38,398 chainMm10,190 chainMm10,398 chainNetHg38,193 chainNetHg38,401 chainNetMm10,193 chainNetMm10,401 netHg38,190 netHg38,398 netMm10,190 netMm10,398 uniprot,757 uniprot,1183 uniprot,1452 casper evaSnp,1177 evaSnp4,1222 evaSnp5,1222 cat chainHg38,72 chainHg38,98 chainHg38,155 chainHg38,201 chainHg38,267 chainHg38,274 chainHg38,573 chainHg38,625 chainMm10,72 chainMm10,98 chainMm10,155 chainMm10,201 chainMm10,267 chainMm10,274 chainMm10,573 chainMm10,625 chainNetHg38,75 chainNetHg38,101 chainNetHg38,158 chainNetHg38,204 chainNetHg38,270 chainNetHg38,277 chainNetHg38,576 chainNetHg38,628 chainNetMm10,75 chainNetMm10,101 chainNetMm10,158 chainNetMm10,204 chainNetMm10,270 chainNetMm10,277 chainNetMm10,576 chainNetMm10,628 est,1 est,3 est,16 est,643 evaSnp,42 evaSnp4,42 evaSnp5,42 gap,17 gold,19 intronEst,3 intronEst,18 intronEst,124 intronEst,724 mrna,1 mrna,3 mrna,17 mrna,385 netHg38,72 netHg38,98 netHg38,155 netHg38,201 netHg38,267 netHg38,274 netHg38,573 netHg38,625 netMm10,72 netMm10,98 netMm10,155 netMm10,201 netMm10,267 netMm10,274 netMm10,573 netMm10,625 refGene,22 refGene,262 refSeqComposite,19 refSeqComposite,441 refSeqComposite,462 refSeqComposite,495 refSeqComposite,1230 transMapEnsemblV5,90 transMapEnsemblV5,202 transMapEnsemblV5,332 transMapEstV5,59 transMapEstV5,171 transMapEstV5,301 transMapRefSeqV5,59 transMapRefSeqV5,171 transMapRefSeqV5,301 transMapRnaV5,59 transMapRnaV5,171 transMapRnaV5,301 transMapV5,60 transMapV5,277 transMapV5,407 uniprot,1936 xenoMrna,28 xenoMrna,465 xenoRefGene,23 xenoRefGene,222 categorized chainHg38,499 chainMm10,499 chainNetHg38,502 chainNetMm10,502 netHg38,499 netMm10,499 cauldron chainHg38,1052 chainMm10,1052 chainNetHg38,1055 chainNetMm10,1055 netHg38,1052 netMm10,1052 cause chainHg38,481 chainMm10,481 chainNetHg38,484 chainNetMm10,484 netHg38,481 netMm10,481 caused chainHg38,107 chainMm10,107 chainNetHg38,110 chainNetMm10,110 netHg38,107 netMm10,107 cavanaugh est,745 intronEst,829 mrna,462 xenoMrna,537 cb transMapEnsemblV5,791 transMapEstV5,760 transMapRefSeqV5,760 transMapRnaV5,760 transMapV5,866 ccaaaaacaaaaaca evaSnp,611 evaSnp4,629 evaSnp5,629 cdna augustusGene,299 est,458 est,461 intronEst,539 intronEst,542 refSeqComposite,266 refSeqComposite,362 transMapEnsemblV5,388 transMapEnsemblV5,684 transMapEnsemblV5,767 transMapEstV5,357 transMapEstV5,653 transMapEstV5,736 transMapRefSeqV5,357 transMapRefSeqV5,653 transMapRefSeqV5,736 transMapRnaV5,357 transMapRnaV5,653 transMapRnaV5,736 transMapV5,15 transMapV5,463 transMapV5,759 transMapV5,842 cdnas transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 cds HLTOGAannotvHg38v1,148 HLTOGAannotvHg38v1,170 HLTOGAannotvHg38v1,182 HLTOGAannotvHg38v1,203 HLTOGAannotvHg38v1,217 HLTOGAannotvHg38v1,229 HLTOGAannotvHg38v1,248 cell uniprot,563 cells est,453 intronEst,534 centromere gap,124 centromeres gap,127 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cesar HLTOGAannotvHg38v1,102 cezard evaSnp,1115 evaSnp4,1160 evaSnp5,1160 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainHg38,2 chainHg38,27 chainHg38,57 chainHg38,60 chainHg38,118 chainHg38,268 chainHg38,309 chainHg38,404 chainHg38,459 chainHg38,563 chainHg38,767 chainHg38,810 chainHg38,821 chainHg38,829 chainHg38,834 chainHg38,857 chainHg38,866 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,118 chainMm10,268 chainMm10,309 chainMm10,404 chainMm10,459 chainMm10,563 chainMm10,767 chainMm10,810 chainMm10,821 chainMm10,829 chainMm10,834 chainMm10,857 chainMm10,866 chainNetHg38,2 chainNetHg38,9 chainNetHg38,30 chainNetHg38,60 chainNetHg38,63 chainNetHg38,121 chainNetHg38,271 chainNetHg38,312 chainNetHg38,407 chainNetHg38,462 chainNetHg38,566 chainNetHg38,770 chainNetHg38,813 chainNetHg38,824 chainNetHg38,832 chainNetHg38,837 chainNetHg38,860 chainNetHg38,869 chainNetHg38Viewchain,1 chainNetHg38Viewchain,7 chainNetHg38Viewnet,7 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,121 chainNetMm10,271 chainNetMm10,312 chainNetMm10,407 chainNetMm10,462 chainNetMm10,566 chainNetMm10,770 chainNetMm10,813 chainNetMm10,824 chainNetMm10,832 chainNetMm10,837 chainNetMm10,860 chainNetMm10,869 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netHg38,27 netHg38,57 netHg38,60 netHg38,118 netHg38,268 netHg38,309 netHg38,404 netHg38,459 netHg38,563 netHg38,767 netHg38,810 netHg38,821 netHg38,829 netHg38,834 netHg38,857 netHg38,866 netMm10,27 netMm10,57 netMm10,60 netMm10,118 netMm10,268 netMm10,309 netMm10,404 netMm10,459 netMm10,563 netMm10,767 netMm10,810 netMm10,821 netMm10,829 netMm10,834 netMm10,857 netMm10,866 transMapV5,137 uniprot,290 chained chainHg38,8 chainMm10,8 chainnet chainHg38,784 chainHg38,989 chainMm10,784 chainMm10,989 chainNetHg38,787 chainNetHg38,992 chainNetMm10,787 chainNetMm10,992 netHg38,784 netHg38,989 netMm10,784 netMm10,989 chains chainHg38,193 chainHg38,204 chainHg38,215 chainHg38,314 chainHg38,353 chainHg38,386 chainHg38,391 chainHg38,413 chainHg38,425 chainHg38,432 chainHg38,489 chainHg38,657 chainHg38,672 chainHg38,686 chainHg38,755 chainHg38,776 chainHg38,791 chainHg38,851 chainHg38,882 chainHg38,977 chainMm10,193 chainMm10,204 chainMm10,215 chainMm10,314 chainMm10,353 chainMm10,386 chainMm10,391 chainMm10,413 chainMm10,425 chainMm10,432 chainMm10,489 chainMm10,657 chainMm10,672 chainMm10,686 chainMm10,755 chainMm10,776 chainMm10,791 chainMm10,851 chainMm10,882 chainMm10,977 chainNetHg38,196 chainNetHg38,207 chainNetHg38,218 chainNetHg38,317 chainNetHg38,356 chainNetHg38,389 chainNetHg38,394 chainNetHg38,416 chainNetHg38,428 chainNetHg38,435 chainNetHg38,492 chainNetHg38,660 chainNetHg38,675 chainNetHg38,689 chainNetHg38,758 chainNetHg38,779 chainNetHg38,794 chainNetHg38,854 chainNetHg38,885 chainNetHg38,980 chainNetMm10,196 chainNetMm10,207 chainNetMm10,218 chainNetMm10,317 chainNetMm10,356 chainNetMm10,389 chainNetMm10,394 chainNetMm10,416 chainNetMm10,428 chainNetMm10,435 chainNetMm10,492 chainNetMm10,660 chainNetMm10,675 chainNetMm10,689 chainNetMm10,758 chainNetMm10,779 chainNetMm10,794 chainNetMm10,854 chainNetMm10,885 chainNetMm10,980 netHg38,193 netHg38,204 netHg38,215 netHg38,314 netHg38,353 netHg38,386 netHg38,391 netHg38,413 netHg38,425 netHg38,432 netHg38,489 netHg38,657 netHg38,672 netHg38,686 netHg38,755 netHg38,776 netHg38,791 netHg38,851 netHg38,882 netHg38,977 netMm10,193 netMm10,204 netMm10,215 netMm10,314 netMm10,353 netMm10,386 netMm10,391 netMm10,413 netMm10,425 netMm10,432 netMm10,489 netMm10,657 netMm10,672 netMm10,686 netMm10,755 netMm10,776 netMm10,791 netMm10,851 netMm10,882 netMm10,977 transMapEnsemblV5,80 transMapEnsemblV5,197 transMapEnsemblV5,210 transMapEnsemblV5,256 transMapEnsemblV5,281 transMapEnsemblV5,329 transMapEnsemblV5,510 transMapEstV5,49 transMapEstV5,166 transMapEstV5,179 transMapEstV5,225 transMapEstV5,250 transMapEstV5,298 transMapEstV5,479 transMapRefSeqV5,49 transMapRefSeqV5,166 transMapRefSeqV5,179 transMapRefSeqV5,225 transMapRefSeqV5,250 transMapRefSeqV5,298 transMapRefSeqV5,479 transMapRnaV5,49 transMapRnaV5,166 transMapRnaV5,179 transMapRnaV5,225 transMapRnaV5,250 transMapRnaV5,298 transMapRnaV5,479 transMapV5,50 transMapV5,86 transMapV5,272 transMapV5,285 transMapV5,331 transMapV5,356 transMapV5,404 transMapV5,585 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 est,122 evaSnp,249 evaSnp,328 evaSnp,878 evaSnp4,249 evaSnp4,328 evaSnp4,900 evaSnp5,249 evaSnp5,328 evaSnp5,900 intronEst,203 mrna,68 refSeqComposite,905 refSeqComposite,919 xenoMrna,143 changed rmsk,285 uniprot,1382 changes evaSnp,369 evaSnp4,369 evaSnp5,369 characteristic est,327 intronEst,408 mrna,273 tanDups,492 xenoMrna,348 characterized evaSnp,657 evaSnp4,675 evaSnp5,675 check chainHg38,336 chainMm10,336 chainNetHg38,339 chainNetMm10,339 netHg38,336 netMm10,336 check-box refSeqComposite,729 checkbox uniprot,231 chen ensGene,176 chiaromonte chainHg38,1022 chainMm10,1022 chainNetHg38,1025 chainNetMm10,1025 netHg38,1022 netMm10,1022 chicken HLTOGAannotvHg38v1,57 augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 est,283 est,322 intronEst,364 intronEst,403 mrna,229 mrna,268 uniprot,657 xenoMrna,304 xenoMrna,343 chosen est,345 intronEst,426 mrna,291 refSeqComposite,534 xenoMrna,366 chr16 refSeqComposite,1553 chr21 evaSnp,1080 evaSnp4,1121 evaSnp5,1121 chr4 chainHg38,368 chainMm10,368 chainNetHg38,371 chainNetMm10,371 netHg38,368 netMm10,368 chr6 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 transMapV5,742 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,162 chrom evaSnp,1079 evaSnp4,1120 evaSnp5,1120 refSeqComposite,1552 transMapEnsemblV5,666 transMapEstV5,635 transMapRefSeqV5,635 transMapRnaV5,635 transMapV5,741 uniprot,1819 chromosome chainHg38,245 chainHg38,323 chainHg38,348 chainHg38,356 chainHg38,366 chainHg38,375 chainHg38,522 chainHg38,537 chainHg38,553 chainHg38,621 chainHg38,626 chainMm10,245 chainMm10,323 chainMm10,348 chainMm10,356 chainMm10,366 chainMm10,375 chainMm10,522 chainMm10,537 chainMm10,553 chainMm10,621 chainMm10,626 chainNetHg38,248 chainNetHg38,326 chainNetHg38,351 chainNetHg38,359 chainNetHg38,369 chainNetHg38,378 chainNetHg38,525 chainNetHg38,540 chainNetHg38,556 chainNetHg38,624 chainNetHg38,629 chainNetMm10,248 chainNetMm10,326 chainNetMm10,351 chainNetMm10,359 chainNetMm10,369 chainNetMm10,378 chainNetMm10,525 chainNetMm10,540 chainNetMm10,556 chainNetMm10,624 chainNetMm10,629 cytoBandIdeo,1 evaSnp,679 evaSnp4,697 evaSnp5,697 gap,152 netHg38,245 netHg38,323 netHg38,348 netHg38,356 netHg38,366 netHg38,375 netHg38,522 netHg38,537 netHg38,553 netHg38,621 netHg38,626 netMm10,245 netMm10,323 netMm10,348 netMm10,356 netMm10,366 netMm10,375 netMm10,522 netMm10,537 netMm10,553 netMm10,621 netMm10,626 ucscToINSDC,20 ucscToRefSeq,15 uniprot,1416 chromosome-based chainHg38,316 chainMm10,316 chainNetHg38,319 chainNetMm10,319 netHg38,316 netMm10,316 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 clark ensGene,178 est,747 intronEst,831 mrna,464 xenoMrna,539 class evaSnp,233 evaSnp,255 evaSnp4,233 evaSnp4,255 evaSnp5,233 evaSnp5,255 rmsk,199 rmsk,253 classes evaSnp,299 evaSnp,793 evaSnp4,299 evaSnp4,814 evaSnp5,299 evaSnp5,814 rmsk,150 classification HLTOGAannotvHg38v1,140 HLTOGAannotvHg38v1,304 rmsk,266 rmsk,282 classified evaSnp,456 evaSnp4,474 evaSnp5,474 classify HLTOGAannotvHg38v1,256 classifying HLTOGAannotvHg38v1,35 clawson gc5BaseBw,83 tanDups,507 ucscToINSDC,52 ucscToRefSeq,46 cleaved uniprot,249 click chainHg38,449 chainHg38,463 chainMm10,449 chainMm10,463 chainNetHg38,452 chainNetHg38,466 chainNetMm10,452 chainNetMm10,466 evaSnp,208 evaSnp4,208 evaSnp5,208 gc5BaseBw,56 netHg38,449 netHg38,463 netMm10,449 netMm10,463 refGene,148 refGene,252 refSeqComposite,747 refSeqComposite,769 transMapEnsemblV5,135 transMapEnsemblV5,149 transMapEstV5,104 transMapEstV5,118 transMapRefSeqV5,104 transMapRefSeqV5,118 transMapRnaV5,104 transMapRnaV5,118 transMapV5,210 transMapV5,224 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,108 xenoRefGene,212 clicking HLTOGAannotvHg38v1,294 uniprot,1633 clinical refSeqComposite,581 clipped nestedRepeats,224 cloned est,463 intronEst,544 close tanDups,374 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 clusters refSeqComposite,411 cm refGene,371 refSeqComposite,1758 xenoRefGene,330 code evaSnp,1036 evaSnp,1050 evaSnp4,1077 evaSnp4,1091 evaSnp5,1077 evaSnp5,1091 refSeqComposite,1513 transMapEnsemblV5,621 transMapEnsemblV5,635 transMapEstV5,590 transMapEstV5,604 transMapRefSeqV5,590 transMapRefSeqV5,604 transMapRnaV5,590 transMapRnaV5,604 transMapV5,696 transMapV5,710 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding HLTOGAannotvHg38v1,113 HLTOGAannotvHg38v1,149 refGene,250 refSeqComposite,1080 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,210 coding_sequence_variant evaSnp,754 evaSnp4,775 evaSnp5,775 codon evaSnp,438 evaSnp,757 evaSnp4,456 evaSnp4,778 evaSnp5,456 evaSnp5,778 genscan,100 genscan,122 mrna,329 mrna,354 refGene,176 refGene,183 refGene,198 refGene,228 refSeqComposite,716 refSeqComposite,810 refSeqComposite,817 refSeqComposite,832 refSeqComposite,862 transMapEnsemblV5,113 transMapEstV5,82 transMapRefSeqV5,82 transMapRnaV5,82 transMapV5,188 xenoMrna,404 xenoMrna,429 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 refGene,203 refGene,210 refSeqComposite,837 refSeqComposite,844 xenoRefGene,163 xenoRefGene,170 cognate transMapEnsemblV5,179 transMapEstV5,148 transMapRefSeqV5,148 transMapRnaV5,148 transMapV5,254 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,643 collaborators refSeqComposite,687 collapse evaSnp,144 evaSnp4,144 evaSnp5,144 tanDups,302 collapsed nestedRepeats,173 tanDups,371 collection refGene,34 refSeqComposite,31 tanDups,17 xenoRefGene,31 color chainHg38,344 chainMm10,344 chainNetHg38,347 chainNetMm10,347 est,128 est,324 evaSnp,290 evaSnp,428 evaSnp4,290 evaSnp4,446 evaSnp5,290 evaSnp5,446 genscan,86 genscan,96 intronEst,209 intronEst,405 mrna,74 mrna,270 netHg38,344 netMm10,344 refGene,96 refGene,207 refSeqComposite,603 refSeqComposite,626 refSeqComposite,841 rmsk,207 xenoMrna,149 xenoMrna,345 xenoRefGene,56 xenoRefGene,167 color-coded HLTOGAannotvHg38v1,139 coloration gold,93 colored chainHg38,319 chainMm10,319 chainNetHg38,322 chainNetMm10,322 est,431 evaSnp,402 evaSnp,727 evaSnp4,420 evaSnp4,748 evaSnp5,420 evaSnp5,748 intronEst,512 mrna,370 netHg38,319 netMm10,319 transMapEnsemblV5,145 transMapEstV5,114 transMapRefSeqV5,114 transMapRnaV5,114 transMapV5,220 uniprot,160 uniprot,176 xenoMrna,445 coloring chainHg38,335 chainMm10,335 chainNetHg38,338 chainNetMm10,338 est,418 genscan,116 intronEst,499 mrna,330 mrna,357 netHg38,335 netMm10,335 refGene,177 refGene,184 refGene,222 refSeqComposite,811 refSeqComposite,818 refSeqComposite,856 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoMrna,405 xenoMrna,432 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors evaSnp,399 evaSnp4,417 evaSnp5,417 refGene,119 refGene,199 refSeqComposite,833 xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 refSeqComposite,1423 refSeqComposite,1434 columns transMapEnsemblV5,550 transMapEstV5,519 transMapRefSeqV5,519 transMapRnaV5,519 transMapV5,625 combination est,286 intronEst,367 mrna,232 xenoMrna,307 combinations xenoMrna,118 combined rmsk,232 comma-separated evaSnp,350 evaSnp4,350 evaSnp5,350 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1544 refSeqComposite,1608 tanDups,204 transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 tanDups,80 comparative chainHg38,10 chainMm10,10 chainNetHg38,13 chainNetHg38Viewchain,11 chainNetHg38Viewnet,11 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netHg38,10 netMm10,10 transMapEnsemblV5,741 transMapEnsemblV5,796 transMapEstV5,710 transMapEstV5,765 transMapRefSeqV5,710 transMapRefSeqV5,765 transMapRnaV5,710 transMapRnaV5,765 transMapV5,816 transMapV5,871 compare mrna,339 refGene,193 refSeqComposite,827 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoMrna,414 xenoRefGene,153 compared transMapV5,153 comparison genscan,109 uniprot,1260 compiled evaSnp,1032 evaSnp4,1073 evaSnp5,1073 refSeqComposite,1509 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,692 uniprot,1771 complete evaSnp,896 evaSnp4,937 evaSnp5,937 genscan,213 completely refGene,175 refSeqComposite,809 uniprot,1464 xenoRefGene,135 complex chainHg38,161 chainMm10,161 chainNetHg38,164 chainNetMm10,164 netHg38,161 netMm10,161 complex_transcript_variant evaSnp,770 evaSnp4,791 evaSnp5,791 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,135 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,148 tanDups,16 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,809 transMapEstV5,778 transMapRefSeqV5,778 transMapRnaV5,778 transMapV5,884 computational genscan,196 tanDups,479 uniprot,51 computed evaSnp,819 evaSnp4,840 evaSnp5,840 transMapEnsemblV5,226 transMapEstV5,195 transMapRefSeqV5,195 transMapRnaV5,195 transMapV5,301 comstock transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 concerning refGene,66 refSeqComposite,125 conditional augustusGene,118 configuration HLTOGAannotvHg38v1,131 chainHg38,308 chainMm10,308 chainNetHg38,311 chainNetMm10,311 est,46 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 intronEst,130 mrna,27 nestedRepeats,114 netHg38,308 netMm10,308 refGene,84 refSeqComposite,143 rmsk,138 transMapEnsemblV5,94 transMapEstV5,63 transMapRefSeqV5,63 transMapRnaV5,63 transMapV5,169 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoMrna,32 xenoRefGene,44 configured est,380 gc5BaseBw,42 intronEst,461 mrna,326 refGene,127 refSeqComposite,726 transMapEnsemblV5,110 transMapEstV5,79 transMapRefSeqV5,79 transMapRnaV5,79 transMapV5,185 xenoMrna,401 xenoRefGene,87 configuring evaSnp,57 evaSnp4,57 evaSnp5,57 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 consequence evaSnp,311 evaSnp,702 evaSnp,732 evaSnp4,311 evaSnp4,714 evaSnp4,753 evaSnp5,311 evaSnp5,714 evaSnp5,753 consequences evaSnp,715 evaSnp,1099 evaSnp4,1140 evaSnp5,1140 conservation transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 considerable est,637 intronEst,718 considered intronEst,57 consistency uniprot,402 consortium uniprot,1986 constituent tanDups,343 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1214 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult est,217 intronEst,298 mrna,163 xenoMrna,238 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainHg38,883 chainMm10,883 chainNetHg38,886 chainNetMm10,886 netHg38,883 netMm10,883 refSeqComposite,1138 containing refSeqComposite,1653 transMapEnsemblV5,545 transMapEstV5,514 transMapRefSeqV5,514 transMapRnaV5,514 transMapV5,620 contains est,242 evaSnp,20 evaSnp4,20 evaSnp5,20 gap,117 intronEst,323 mrna,188 refGene,180 refSeqComposite,151 refSeqComposite,868 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoMrna,263 xenoRefGene,140 contamination est,625 intronEst,97 intronEst,706 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,81 contigs gap,84 gold,73 gold,98 gold,115 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 evaSnp,271 evaSnp4,271 evaSnp5,271 refGene,130 refSeqComposite,730 xenoRefGene,90 convenience uniprot,404 conventions HLTOGAannotvHg38v1,129 chainHg38,306 chainMm10,306 chainNetHg38,309 chainNetMm10,309 est,44 est,52 genscan,62 genscan,70 intronEst,128 intronEst,136 mrna,25 mrna,33 nestedRepeats,112 netHg38,306 netMm10,306 refGene,82 refGene,90 refSeqComposite,141 refSeqComposite,451 refSeqComposite,597 rmsk,136 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEstV5,61 transMapEstV5,69 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRnaV5,61 transMapRnaV5,69 transMapV5,167 transMapV5,175 uniprot,447 xenoMrna,30 xenoMrna,38 xenoRefGene,42 xenoRefGene,50 convert evaSnp,921 evaSnp,931 evaSnp4,962 evaSnp4,972 evaSnp5,962 evaSnp5,972 converted chainHg38,598 chainMm10,598 chainNetHg38,601 chainNetMm10,601 evaSnp,682 evaSnp,789 evaSnp,798 evaSnp4,700 evaSnp4,810 evaSnp4,819 evaSnp5,700 evaSnp5,810 evaSnp5,819 netHg38,598 netMm10,598 refSeqComposite,1170 refSeqComposite,1583 uniprot,1477 uniprot,1760 coordinates evaSnp,198 evaSnp4,198 evaSnp5,198 refSeqComposite,36 refSeqComposite,67 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 copying evaSnp,190 evaSnp4,190 evaSnp5,190 correct uniprot,962 uniprot,1222 corrections refGene,61 refSeqComposite,120 corresponding evaSnp,674 evaSnp4,692 evaSnp5,692 transMapEnsemblV5,257 transMapEstV5,226 transMapRefSeqV5,226 transMapRnaV5,226 transMapV5,332 corresponds est,225 evaSnp,88 evaSnp4,88 evaSnp5,88 intronEst,306 mrna,171 xenoMrna,246 could refSeqComposite,965 refSeqComposite,1540 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,136 gap,154 tanDups,456 counts gold,142 cover est,558 intronEst,639 coverage uniprot,1485 covered chainHg38,806 chainMm10,806 chainNetHg38,809 chainNetMm10,809 gap,24 gold,26 netHg38,806 netMm10,806 cow transMapEnsemblV5,448 transMapEstV5,417 transMapRefSeqV5,417 transMapRnaV5,417 transMapV5,523 cox ensGene,180 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,309 windowmaskerSdust,48 created chainHg38,981 chainMm10,981 chainNetHg38,984 chainNetMm10,984 microsat,89 netHg38,981 netMm10,981 refSeqComposite,101 refSeqComposite,1149 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainHg38,631 chainMm10,631 chainNetHg38,634 chainNetMm10,634 netHg38,631 netMm10,631 credits HLTOGAannotvHg38v1,314 augustusGene,247 chainHg38,907 chainMm10,907 chainNetHg38,910 chainNetMm10,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 est,721 evaSnp,1086 evaSnp4,1127 evaSnp5,1127 gc5BaseBw,71 genscan,169 intronEst,805 microsat,104 mrna,437 nestedRepeats,302 netHg38,907 netMm10,907 refGene,317 refSeqComposite,1706 rmsk,325 simpleRepeat,66 tanDups,468 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 ucscToINSDC,42 ucscToRefSeq,36 uniprot,1938 xenoMrna,512 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 est,300 est,318 est,356 est,374 intronEst,381 intronEst,399 intronEst,437 intronEst,455 mrna,246 mrna,264 mrna,302 mrna,320 transMapEnsemblV5,356 transMapEstV5,325 transMapRefSeqV5,325 transMapRnaV5,325 transMapV5,431 xenoMrna,321 xenoMrna,339 xenoMrna,377 xenoMrna,395 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainHg38,957 chainHg38,1002 chainMm10,957 chainMm10,1002 chainNetHg38,960 chainNetHg38,1005 chainNetMm10,960 chainNetMm10,1005 netHg38,957 netHg38,1002 netMm10,957 netMm10,1002 tanDups,486 tanDups,510 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 culex augustusGene,220 cunningham evaSnp,1117 evaSnp4,1162 evaSnp5,1162 curated evaSnp4,394 evaSnp4,721 evaSnp5,394 evaSnp5,721 ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refGene,333 refGene,411 refSeqComposite,87 refSeqComposite,201 refSeqComposite,209 refSeqComposite,250 refSeqComposite,314 refSeqComposite,399 refSeqComposite,421 refSeqComposite,468 refSeqComposite,519 refSeqComposite,552 refSeqComposite,587 refSeqComposite,1408 refSeqComposite,1668 refSeqComposite,1720 refSeqComposite,1798 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current est,160 intronEst,241 mrna,106 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 xenoMrna,181 current_ids.vcf.gz evaSnp,672 evaSnp4,690 evaSnp5,690 currently gold,78 refSeqComposite,472 curwen ensGene,184 cutoff refSeqComposite,938 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d HLTOGAannotvHg38v1,341 augustusGene,293 chainHg38,1049 chainHg38,1093 chainMm10,1049 chainMm10,1093 chainNetHg38,1052 chainNetHg38,1096 chainNetMm10,1052 chainNetMm10,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 evaSnp,1180 evaSnp,1188 evaSnp4,1225 evaSnp4,1233 evaSnp5,1225 evaSnp5,1233 genscan,192 netHg38,1049 netHg38,1093 netMm10,1049 netMm10,1093 transMapEnsemblV5,761 transMapEnsemblV5,795 transMapEstV5,730 transMapEstV5,764 transMapRefSeqV5,730 transMapRefSeqV5,764 transMapRnaV5,730 transMapRnaV5,764 transMapV5,836 transMapV5,870 d23-6 est,792 intronEst,876 mrna,509 xenoMrna,584 d36-42 est,766 intronEst,850 mrna,483 xenoMrna,558 d501-4 refGene,429 refSeqComposite,1816 xenoRefGene,388 d71-5 uniprot,2005 d756-63 refGene,395 refSeqComposite,1782 xenoRefGene,354 da est,744 est,772 intronEst,828 intronEst,856 mrna,461 mrna,489 xenoMrna,536 xenoMrna,564 danrer10 evaSnp4,923 evaSnp5,923 danrer11 evaSnp4,925 evaSnp5,925 dark refGene,113 refSeqComposite,621 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,73 darker intronEst,145 darkly est,66 mrna,47 xenoMrna,52 data HLTOGAannotvHg38v1,316 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 est,731 evaSnp,220 evaSnp,224 evaSnp,245 evaSnp,277 evaSnp,660 evaSnp,910 evaSnp,944 evaSnp,955 evaSnp,961 evaSnp,980 evaSnp,1098 evaSnp,1192 evaSnp4,220 evaSnp4,224 evaSnp4,245 evaSnp4,277 evaSnp4,678 evaSnp4,951 evaSnp4,985 evaSnp4,996 evaSnp4,1002 evaSnp4,1021 evaSnp4,1139 evaSnp4,1237 evaSnp5,220 evaSnp5,224 evaSnp5,245 evaSnp5,277 evaSnp5,678 evaSnp5,951 evaSnp5,985 evaSnp5,996 evaSnp5,1002 evaSnp5,1021 evaSnp5,1139 evaSnp5,1237 gap,96 gc5BaseBw,73 intronEst,815 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 refGene,37 refGene,327 refSeqComposite,153 refSeqComposite,652 refSeqComposite,1153 refSeqComposite,1159 refSeqComposite,1285 refSeqComposite,1289 refSeqComposite,1311 refSeqComposite,1363 refSeqComposite,1648 refSeqComposite,1714 rmsk,126 rmsk,287 tanDups,497 transMapEnsemblV5,515 transMapEnsemblV5,519 transMapEnsemblV5,533 transMapEnsemblV5,570 transMapEnsemblV5,574 transMapEnsemblV5,688 transMapEstV5,484 transMapEstV5,488 transMapEstV5,502 transMapEstV5,539 transMapEstV5,543 transMapEstV5,657 transMapRefSeqV5,484 transMapRefSeqV5,488 transMapRefSeqV5,502 transMapRefSeqV5,539 transMapRefSeqV5,543 transMapRefSeqV5,657 transMapRnaV5,484 transMapRnaV5,488 transMapRnaV5,502 transMapRnaV5,539 transMapRnaV5,543 transMapRnaV5,657 transMapV5,590 transMapV5,594 transMapV5,608 transMapV5,645 transMapV5,649 transMapV5,763 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoMrna,523 xenoRefGene,34 xenoRefGene,287 database chainHg38,973 chainMm10,973 chainNetHg38,976 chainNetMm10,976 ensGene,193 est,764 est,790 evaSnp,47 evaSnp,493 evaSnp,543 evaSnp4,47 evaSnp4,511 evaSnp4,561 evaSnp5,47 evaSnp5,511 evaSnp5,561 intronEst,848 intronEst,874 mrna,481 mrna,507 nestedRepeats,345 netHg38,973 netMm10,973 refGene,393 refGene,414 refGene,427 refSeqComposite,560 refSeqComposite,1398 refSeqComposite,1780 refSeqComposite,1801 refSeqComposite,1814 rmsk,125 rmsk,368 transMapEnsemblV5,165 transMapEstV5,134 transMapRefSeqV5,134 transMapRnaV5,134 transMapV5,240 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoMrna,556 xenoMrna,582 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases est,612 est,738 intronEst,101 intronEst,693 intronEst,822 mrna,455 refSeqComposite,278 refSeqComposite,425 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 xenoMrna,530 dataset refSeqComposite,528 david chainHg38,967 chainMm10,967 chainNetHg38,970 chainNetMm10,970 netHg38,967 netMm10,967 davis transMapEnsemblV5,724 transMapEstV5,693 transMapRefSeqV5,693 transMapRnaV5,693 transMapV5,799 dbsnp evaSnp,46 evaSnp4,46 evaSnp5,46 de augustusGene,303 transMapEnsemblV5,771 transMapEstV5,740 transMapRefSeqV5,740 transMapRnaV5,740 transMapV5,846 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainHg38,4 chainHg38,66 chainHg38,300 chainMm10,4 chainMm10,66 chainMm10,300 chainNetHg38,5 chainNetHg38,69 chainNetHg38,303 chainNetHg38Viewchain,3 chainNetHg38Viewnet,3 chainNetMm10,5 chainNetMm10,69 chainNetMm10,303 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netHg38,4 netHg38,66 netHg38,300 netMm10,4 netMm10,66 netMm10,300 rmsk,412 rmsk,434 transMapEnsemblV5,746 transMapEnsemblV5,812 transMapEstV5,715 transMapEstV5,781 transMapRefSeqV5,715 transMapRefSeqV5,781 transMapRnaV5,715 transMapRnaV5,781 transMapV5,821 transMapV5,887 default chainHg38,312 chainMm10,312 chainNetHg38,315 chainNetMm10,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netHg38,312 netMm10,312 refGene,141 refGene,234 refSeqComposite,762 refSeqComposite,1036 refSeqComposite,1063 uniprot,225 xenoRefGene,101 xenoRefGene,194 defined refSeqComposite,623 uniprot,305 uniprot,1387 definition gap,39 gold,41 tanDups,325 degraded est,527 intronEst,608 degree est,622 intronEst,703 deleted evaSnp,488 evaSnp4,506 evaSnp5,506 deleterious evaSnp,408 evaSnp4,426 evaSnp5,426 deletion chainHg38,145 chainHg38,1054 chainMm10,145 chainMm10,1054 chainNetHg38,148 chainNetHg38,1057 chainNetMm10,148 chainNetMm10,1057 est,440 evaSnp,481 evaSnp,518 evaSnp4,499 evaSnp4,536 evaSnp5,499 evaSnp5,536 intronEst,521 mrna,379 netHg38,145 netHg38,1054 netMm10,145 netMm10,1054 refSeqComposite,946 refSeqComposite,1042 refSeqComposite,1069 rmsk,220 xenoMrna,454 deletions chainHg38,113 chainHg38,176 chainMm10,113 chainMm10,176 chainNetHg38,116 chainNetHg38,179 chainNetMm10,116 chainNetMm10,179 evaSnp,30 evaSnp4,30 evaSnp5,30 netHg38,113 netHg38,176 netMm10,113 netMm10,176 delins evaSnp,581 evaSnp4,599 evaSnp5,599 delivered gap,51 gold,50 dense est,58 evaSnp,146 evaSnp4,146 evaSnp5,146 gold,67 intronEst,142 mrna,39 nestedRepeats,157 nestedRepeats,168 xenoMrna,44 density evaSnp,172 evaSnp4,172 evaSnp5,172 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,71 windowmaskerSdust,15 deposited est,599 intronEst,680 deprecated uniprot,1044 derived chainHg38,757 chainMm10,757 chainNetHg38,760 chainNetMm10,760 netHg38,757 netMm10,757 uniprot,830 described chainHg38,764 chainMm10,764 chainNetHg38,767 chainNetMm10,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netHg38,764 netMm10,764 refSeqComposite,1637 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,60 gold,59 describing evaSnp,365 evaSnp4,365 evaSnp5,365 refSeqComposite,254 description HLTOGAannotvHg38v1,15 augustusGene,12 chainHg38,12 chainHg38,769 chainMm10,12 chainMm10,769 chainNetHg38,15 chainNetHg38,772 chainNetMm10,15 chainNetMm10,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 est,10 est,109 evaSnp,17 evaSnp4,17 evaSnp5,17 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 intronEst,12 intronEst,190 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netHg38,12 netHg38,769 netMm10,12 netMm10,769 refGene,15 refGene,137 refSeqComposite,11 refSeqComposite,737 rmsk,9 simpleRepeat,11 tanDups,9 transMapEnsemblV5,14 transMapEnsemblV5,232 transMapEstV5,12 transMapEstV5,201 transMapRefSeqV5,13 transMapRefSeqV5,201 transMapRnaV5,13 transMapRnaV5,201 transMapV5,11 transMapV5,307 ucscToINSDC,13 ucscToRefSeq,8 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoMrna,10 xenoMrna,130 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 designed refSeqComposite,1436 uniprot,1355 desired est,285 intronEst,366 mrna,231 xenoMrna,306 destination transMapEnsemblV5,414 transMapEstV5,383 transMapRefSeqV5,383 transMapRnaV5,383 transMapV5,489 destined uniprot,244 destuniq transMapEnsemblV5,433 transMapEstV5,402 transMapRefSeqV5,402 transMapRnaV5,402 transMapV5,508 detail genscan,164 detailed augustusGene,90 chainHg38,455 chainHg38,474 chainMm10,455 chainMm10,474 chainNetHg38,458 chainNetHg38,477 chainNetMm10,458 chainNetMm10,477 nestedRepeats,70 netHg38,455 netHg38,474 netMm10,455 netMm10,474 rmsk,37 uniprot,692 details evaSnp,176 evaSnp4,176 evaSnp5,176 refSeqComposite,94 refSeqComposite,1122 rmsk,119 transMapEnsemblV5,234 transMapEstV5,203 transMapRefSeqV5,203 transMapRnaV5,203 transMapV5,309 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,272 transMapEstV5,241 transMapRefSeqV5,241 transMapRnaV5,241 transMapV5,347 determine HLTOGAannotvHg38v1,107 transMapV5,90 determined evaSnp,257 evaSnp4,257 evaSnp5,257 windowmaskerSdust,19 determining chainHg38,479 chainMm10,479 chainNetHg38,482 chainNetMm10,482 netHg38,479 netMm10,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainHg38,914 chainHg38,949 chainHg38,995 chainMm10,914 chainMm10,949 chainMm10,995 chainNetHg38,917 chainNetHg38,952 chainNetHg38,998 chainNetMm10,917 chainNetMm10,952 chainNetMm10,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netHg38,914 netHg38,949 netHg38,995 netMm10,914 netMm10,949 netMm10,995 deviation evaSnp,644 evaSnp4,662 evaSnp5,662 dfam rmsk,112 dg HLTOGAannotvHg38v1,351 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,582 diekhans augustusGene,288 transMapEnsemblV5,680 transMapEnsemblV5,713 transMapEnsemblV5,756 transMapEnsemblV5,788 transMapEstV5,649 transMapEstV5,682 transMapEstV5,725 transMapEstV5,757 transMapRefSeqV5,649 transMapRefSeqV5,682 transMapRefSeqV5,725 transMapRefSeqV5,757 transMapRnaV5,649 transMapRnaV5,682 transMapRnaV5,725 transMapRnaV5,757 transMapV5,755 transMapV5,788 transMapV5,831 transMapV5,863 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ est,403 intronEst,484 refSeqComposite,287 uniprot,746 uniprot,1131 difference uniprot,1251 differences ncbiRefSeqGenomicDiff,3 refSeqComposite,63 refSeqComposite,459 refSeqComposite,888 refSeqComposite,957 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainHg38,554 chainMm10,554 chainNetHg38,557 chainNetMm10,557 ensGene,22 evaSnp,376 evaSnp,597 evaSnp,627 evaSnp4,376 evaSnp4,615 evaSnp4,645 evaSnp5,376 evaSnp5,615 evaSnp5,645 gc5BaseBw,50 genscan,54 netHg38,554 netMm10,554 refGene,74 refSeqComposite,98 refSeqComposite,133 refSeqComposite,870 rmsk,149 uniprot,634 xenoMrna,111 differing refSeqComposite,152 difficult transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 diffs ncbiRefSeqGenomicDiff,2 refSeqComposite,456 refSeqComposite,866 refSeqComposite,1196 refSeqComposite,1370 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 direction est,78 est,96 intronEst,159 intronEst,177 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 refSeqComposite,1526 refSeqComposite,1575 refSeqComposite,1595 rmsk,134 discarded chainHg38,683 chainMm10,683 chainNetHg38,686 chainNetMm10,686 netHg38,683 netMm10,683 refGene,275 refSeqComposite,1243 tanDups,378 transMapEnsemblV5,380 transMapEstV5,349 transMapRefSeqV5,349 transMapRnaV5,349 transMapV5,455 xenoRefGene,235 discovery transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display HLTOGAannotvHg38v1,128 chainHg38,237 chainHg38,305 chainHg38,350 chainHg38,380 chainHg38,439 chainHg38,468 chainHg38,497 chainHg38,971 chainMm10,237 chainMm10,305 chainMm10,350 chainMm10,380 chainMm10,439 chainMm10,468 chainMm10,497 chainMm10,971 chainNetHg38,240 chainNetHg38,308 chainNetHg38,353 chainNetHg38,383 chainNetHg38,442 chainNetHg38,471 chainNetHg38,500 chainNetHg38,974 chainNetMm10,240 chainNetMm10,308 chainNetMm10,353 chainNetMm10,383 chainNetMm10,442 chainNetMm10,471 chainNetMm10,500 chainNetMm10,974 est,43 est,51 est,59 est,124 est,151 est,181 est,326 est,350 est,366 est,382 est,392 est,441 evaSnp,60 evaSnp,139 evaSnp,168 evaSnp,215 evaSnp,496 evaSnp,546 evaSnp4,60 evaSnp4,139 evaSnp4,168 evaSnp4,215 evaSnp4,514 evaSnp4,564 evaSnp5,60 evaSnp5,139 evaSnp5,168 evaSnp5,215 evaSnp5,514 evaSnp5,564 genscan,61 genscan,69 genscan,104 gold,130 intronEst,116 intronEst,127 intronEst,135 intronEst,143 intronEst,205 intronEst,232 intronEst,262 intronEst,407 intronEst,431 intronEst,447 intronEst,463 intronEst,473 intronEst,522 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netHg38,237 netHg38,305 netHg38,350 netHg38,380 netHg38,439 netHg38,468 netHg38,497 netHg38,971 netMm10,237 netMm10,305 netMm10,350 netMm10,380 netMm10,439 netMm10,468 netMm10,497 netMm10,971 refGene,81 refGene,89 refGene,118 refGene,154 refGene,197 refSeqComposite,140 refSeqComposite,450 refSeqComposite,596 refSeqComposite,717 refSeqComposite,775 refSeqComposite,831 refSeqComposite,1179 refSeqComposite,1442 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,91 transMapEnsemblV5,99 transMapEnsemblV5,112 transMapEstV5,60 transMapEstV5,68 transMapEstV5,81 transMapRefSeqV5,60 transMapRefSeqV5,68 transMapRefSeqV5,81 transMapRnaV5,60 transMapRnaV5,68 transMapRnaV5,81 transMapV5,166 transMapV5,174 transMapV5,187 uniprot,446 xenoMrna,29 xenoMrna,37 xenoMrna,45 xenoMrna,145 xenoMrna,172 xenoMrna,202 xenoMrna,347 xenoMrna,371 xenoMrna,387 xenoMrna,403 xenoMrna,455 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainHg38,416 chainHg38,513 chainHg38,688 chainMm10,416 chainMm10,513 chainMm10,688 chainNetHg38,419 chainNetHg38,516 chainNetHg38,691 chainNetMm10,419 chainNetMm10,516 chainNetMm10,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 evaSnp,82 evaSnp,107 evaSnp,115 evaSnp4,82 evaSnp4,107 evaSnp4,115 evaSnp5,82 evaSnp5,107 evaSnp5,115 gc5BaseBw,54 intronEst,801 nestedRepeats,124 nestedRepeats,217 netHg38,416 netHg38,513 netHg38,688 netMm10,416 netMm10,513 netMm10,688 refGene,242 refSeqComposite,1115 xenoRefGene,202 displays chainHg38,120 chainMm10,120 chainNetHg38,123 chainNetMm10,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 evaSnp,216 evaSnp4,216 evaSnp5,216 microsat,13 netHg38,120 netMm10,120 rmsk,145 simpleRepeat,14 xenoMrna,13 dissertation augustusGene,105 distance transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant est,582 intronEst,663 transMapEnsemblV5,268 transMapEstV5,237 transMapRefSeqV5,237 transMapRnaV5,237 transMapV5,63 transMapV5,343 distinguish HLTOGAannotvHg38v1,92 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,84 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainHg38,906 chainMm10,906 chainNetHg38,909 chainNetMm10,909 nestedRepeats,212 netHg38,906 netMm10,906 transMapV5,151 divided uniprot,56 dj est,752 est,776 intronEst,836 intronEst,860 mrna,469 mrna,493 xenoMrna,544 xenoMrna,568 dl est,780 intronEst,864 mrna,497 xenoMrna,572 dna chainHg38,1015 chainMm10,1015 chainNetHg38,1018 chainNetMm10,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netHg38,1015 netMm10,1015 refSeqComposite,1081 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 tanDups,207 xenoMrna,108 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 evaSnp,844 evaSnp4,865 evaSnp5,865 refSeqComposite,389 transMapEnsemblV5,317 transMapEstV5,286 transMapRefSeqV5,286 transMapRnaV5,286 transMapV5,392 uniprot,168 uniprot,1129 doc rmsk,132 document gap,57 gold,56 documentation evaSnp,897 evaSnp4,938 evaSnp5,938 gap,29 gold,31 doi evaSnp,1157 evaSnp4,1202 evaSnp5,1202 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainHg38,128 chainHg38,157 chainMm10,128 chainMm10,157 chainNetHg38,131 chainNetHg38,160 chainNetMm10,131 chainNetMm10,160 netHg38,128 netHg38,157 netMm10,128 netMm10,157 refSeqComposite,1016 double-lined chainHg38,217 chainMm10,217 chainNetHg38,220 chainNetMm10,220 netHg38,217 netMm10,217 double-sided chainHg38,102 chainMm10,102 chainNetHg38,105 chainNetMm10,105 netHg38,102 netMm10,102 down ensGene,186 download ensGene,93 ensGene,143 evaSnp,988 evaSnp,1005 evaSnp4,1029 evaSnp4,1046 evaSnp5,1029 evaSnp5,1046 refSeqComposite,1561 refSeqComposite,1704 transMapEnsemblV5,557 transMapEstV5,526 transMapRefSeqV5,526 transMapRnaV5,526 transMapV5,632 uniprot,1744 uniprot,1983 downloaded evaSnp,662 evaSnp,1002 evaSnp,1038 evaSnp4,680 evaSnp4,1043 evaSnp4,1079 evaSnp5,680 evaSnp5,1043 evaSnp5,1079 refSeqComposite,1162 refSeqComposite,1326 refSeqComposite,1515 transMapEnsemblV5,554 transMapEnsemblV5,623 transMapEstV5,523 transMapEstV5,592 transMapRefSeqV5,523 transMapRefSeqV5,592 transMapRnaV5,523 transMapRnaV5,592 transMapV5,629 transMapV5,698 ucscToINSDC,36 ucscToRefSeq,30 uniprot,1741 uniprot,1777 downloading evaSnp,1048 evaSnp4,1089 evaSnp5,1089 transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1787 downloads ensGene,74 ensGene,85 refSeqComposite,1329 refSeqComposite,1345 refSeqComposite,1484 refSeqComposite,1574 refSeqComposite,1599 refSeqComposite,1678 rmsk,76 uniprot,1698 downstream refSeqComposite,1453 tanDups,140 tanDups,251 downstream_gene_variant evaSnp,777 evaSnp4,798 evaSnp5,798 downstreamcontig.fa tanDups,213 dr refGene,405 refSeqComposite,1792 xenoRefGene,364 drastically intronEst,103 drawn gap,107 gold,126 draws uniprot,1532 drosophila augustusGene,213 due HLTOGAannotvHg38v1,207 chainHg38,142 chainHg38,210 chainHg38,222 chainMm10,142 chainMm10,210 chainMm10,222 chainNetHg38,145 chainNetHg38,213 chainNetHg38,225 chainNetMm10,145 chainNetMm10,213 chainNetMm10,225 evaSnp,374 evaSnp4,374 evaSnp5,374 netHg38,142 netHg38,210 netHg38,222 netMm10,142 netMm10,210 netMm10,222 refSeqComposite,975 uniprot,848 uniprot,919 uniprot,1368 duplicate tanDups,182 uniprot,594 duplicated tanDups,133 tanDups,327 duplication chainHg38,1053 chainMm10,1053 chainNetHg38,1056 chainNetMm10,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netHg38,1053 netMm10,1053 duplications transMapEnsemblV5,310 transMapEnsemblV5,507 transMapEstV5,279 transMapEstV5,476 transMapRefSeqV5,279 transMapRefSeqV5,476 transMapRnaV5,279 transMapRnaV5,476 transMapV5,385 transMapV5,582 dups tanDups,2 tanDups,31 tanDups,52 tanDups,150 tanDups,255 tanDups,467 tandemDups,2 during chainHg38,811 chainMm10,811 chainNetHg38,814 chainNetMm10,814 netHg38,811 netMm10,811 tanDups,68 dynamic chainHg38,644 chainMm10,644 chainNetHg38,647 chainNetMm10,647 netHg38,644 netMm10,644 e HLTOGAannotvHg38v1,339 ensGene,173 uniprot,2021 e.g chainHg38,367 chainMm10,367 chainNetHg38,370 chainNetMm10,370 evaSnp,512 evaSnp,562 evaSnp,609 evaSnp,629 evaSnp,813 evaSnp,874 evaSnp,1071 evaSnp4,530 evaSnp4,580 evaSnp4,627 evaSnp4,647 evaSnp4,834 evaSnp4,895 evaSnp4,1112 evaSnp5,530 evaSnp5,580 evaSnp5,627 evaSnp5,647 evaSnp5,834 evaSnp5,895 evaSnp5,1112 netHg38,367 netMm10,367 refSeqComposite,1132 uniprot,398 uniprot,467 e247 transMapEnsemblV5,815 transMapEstV5,784 transMapRefSeqV5,784 transMapRnaV5,784 transMapV5,890 eabn3107 HLTOGAannotvHg38v1,370 each HLTOGAannotvHg38v1,132 chainHg38,255 chainMm10,255 chainNetHg38,258 chainNetMm10,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 est,214 evaSnp,360 evaSnp4,360 evaSnp5,360 genscan,99 intronEst,295 mrna,160 nestedRepeats,120 netHg38,255 netMm10,255 refSeqComposite,538 refSeqComposite,1425 tanDups,25 tanDups,106 tanDups,194 tanDups,199 transMapEnsemblV5,386 transMapEnsemblV5,400 transMapEnsemblV5,409 transMapEnsemblV5,428 transMapEstV5,355 transMapEstV5,369 transMapEstV5,378 transMapEstV5,397 transMapRefSeqV5,355 transMapRefSeqV5,369 transMapRefSeqV5,378 transMapRefSeqV5,397 transMapRnaV5,355 transMapRnaV5,369 transMapRnaV5,378 transMapRnaV5,397 transMapV5,461 transMapV5,475 transMapV5,484 transMapV5,503 uniprot,151 xenoMrna,235 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 effect est,597 evaSnp,287 evaSnp,410 evaSnp4,287 evaSnp4,428 evaSnp5,287 evaSnp5,428 intronEst,678 effects evaSnp,296 evaSnp4,296 evaSnp5,296 either chainHg38,125 chainMm10,125 chainNetHg38,128 chainNetMm10,128 evaSnp,279 evaSnp4,279 evaSnp5,279 gap,86 netHg38,125 netMm10,125 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 eliminate est,669 intronEst,750 eliminating intronEst,109 elsevier genscan,202 em windowmaskerSdust,93 emerged chainHg38,817 chainMm10,817 chainNetHg38,820 chainNetMm10,820 est,567 intronEst,648 netHg38,817 netMm10,817 encode HLTOGAannotvHg38v1,161 HLTOGAannotvHg38v1,191 HLTOGAannotvHg38v1,267 HLTOGAannotvHg38v1,290 end est,517 est,535 est,545 est,586 evaSnp,1083 evaSnp4,1124 evaSnp5,1124 intronEst,598 intronEst,616 intronEst,626 intronEst,667 refSeqComposite,1050 refSeqComposite,1556 rmsk,245 tanDups,124 tanDups,238 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,90 tanDups,234 enough HLTOGAannotvHg38v1,254 refSeqComposite,1024 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 evaSnp4,400 evaSnp4,729 evaSnp4,1156 evaSnp5,400 evaSnp5,729 evaSnp5,1156 transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,589 transMapEnsemblV5,705 transMapEstV5,558 transMapEstV5,674 transMapRefSeqV5,558 transMapRefSeqV5,674 transMapRnaV5,558 transMapRnaV5,674 transMapV5,664 transMapV5,780 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 ensure transMapEnsemblV5,382 transMapEstV5,351 transMapRefSeqV5,351 transMapRnaV5,351 transMapV5,457 enter chainHg38,361 chainMm10,361 chainNetHg38,364 chainNetMm10,364 netHg38,361 netMm10,361 entered est,251 est,261 intronEst,332 intronEst,342 mrna,197 mrna,207 xenoMrna,272 xenoMrna,282 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 tanDups,38 tanDups,158 tanDups,270 tandemDups,9 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1354 entry evaSnp,942 evaSnp4,983 evaSnp5,983 epub evaSnp,1161 evaSnp4,1206 evaSnp5,1206 equal evaSnp,624 evaSnp4,642 evaSnp5,642 tanDups,227 ermolaeva refGene,368 refSeqComposite,1755 xenoRefGene,327 errors refSeqComposite,949 especially est,152 intronEst,233 mrna,98 xenoMrna,173 est est,9 est,84 est,180 est,448 est,611 est,632 est,683 est,729 intronEst,11 intronEst,60 intronEst,75 intronEst,100 intronEst,125 intronEst,165 intronEst,261 intronEst,529 intronEst,692 intronEst,713 intronEst,764 intronEst,813 mrna,9 refSeqComposite,263 refSeqComposite,363 transMapEnsemblV5,686 transMapEstV5,4 transMapEstV5,18 transMapEstV5,655 transMapRefSeqV5,655 transMapRnaV5,655 transMapV5,761 xenoMrna,9 established refSeqComposite,684 ests est,2 est,4 est,20 est,26 est,190 est,295 est,310 est,351 est,369 est,487 est,532 est,543 est,644 est,671 intronEst,2 intronEst,4 intronEst,22 intronEst,38 intronEst,113 intronEst,119 intronEst,153 intronEst,271 intronEst,376 intronEst,391 intronEst,432 intronEst,450 intronEst,568 intronEst,613 intronEst,624 intronEst,725 intronEst,752 transMapEnsemblV5,176 transMapEnsemblV5,598 transMapEstV5,2 transMapEstV5,145 transMapEstV5,567 transMapRefSeqV5,145 transMapRefSeqV5,567 transMapRnaV5,145 transMapRnaV5,567 transMapV5,251 transMapV5,673 et HLTOGAannotvHg38v1,354 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 evaSnp,827 evaSnp,1135 evaSnp4,848 evaSnp4,1180 evaSnp5,848 evaSnp5,1180 refGene,378 refSeqComposite,1765 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 xenoRefGene,337 etc evaSnp,816 evaSnp4,837 evaSnp5,837 uniprot,479 european evaSnp,9 evaSnp,34 evaSnp,665 evaSnp,1093 evaSnp,1138 evaSnp4,9 evaSnp4,34 evaSnp4,683 evaSnp4,1134 evaSnp4,1183 evaSnp5,9 evaSnp5,34 evaSnp5,683 evaSnp5,1134 evaSnp5,1183 eva evaSnp,1 evaSnp,37 evaSnp,240 evaSnp,280 evaSnp,458 evaSnp,668 evaSnp,812 evaSnp,906 evaSnp4,1 evaSnp4,37 evaSnp4,240 evaSnp4,280 evaSnp4,476 evaSnp4,686 evaSnp4,833 evaSnp4,947 evaSnp5,1 evaSnp5,37 evaSnp5,240 evaSnp5,280 evaSnp5,476 evaSnp5,686 evaSnp5,833 evaSnp5,947 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 evasnp.bb evaSnp,1014 evaSnp,1078 evasnp4.bb evaSnp4,1055 evaSnp4,1119 evasnp5.bb evaSnp5,1055 evaSnp5,1119 even est,606 est,613 intronEst,687 intronEst,694 uniprot,136 every chainHg38,270 chainMm10,270 chainNetHg38,273 chainNetMm10,273 evaSnp,704 evaSnp4,716 evaSnp5,716 netHg38,270 netMm10,270 refSeqComposite,475 uniprot,1571 evidence HLTOGAannotvHg38v1,196 HLTOGAannotvHg38v1,250 HLTOGAannotvHg38v1,283 intronEst,63 refSeqComposite,260 refSeqComposite,275 evolution chainHg38,1050 chainMm10,1050 chainNetHg38,1053 chainNetMm10,1053 netHg38,1050 netMm10,1050 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew est,756 intronEst,840 mrna,473 xenoMrna,548 ewing transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 exact uniprot,1622 uniprot,1747 exactly tanDups,21 tanDups,33 tanDups,102 tanDups,134 tanDups,235 tanDups,245 tandemDups,4 example est,183 est,236 intronEst,264 intronEst,317 mrna,129 mrna,182 refSeqComposite,1530 rmsk,256 transMapEnsemblV5,445 transMapEnsemblV5,657 transMapEstV5,414 transMapEstV5,626 transMapRefSeqV5,414 transMapRefSeqV5,626 transMapRnaV5,414 transMapRnaV5,626 transMapV5,96 transMapV5,520 transMapV5,732 uniprot,1450 uniprot,1811 uniprot,1901 xenoMrna,204 xenoMrna,257 examples refSeqComposite,405 except evaSnp,392 evaSnp,599 evaSnp,716 evaSnp4,617 evaSnp5,617 refSeqComposite,40 uniprot,508 exclude est,131 est,336 est,342 intronEst,212 intronEst,417 intronEst,423 mrna,77 mrna,282 mrna,288 xenoMrna,152 xenoMrna,357 xenoMrna,363 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exhibits HLTOGAannotvHg38v1,154 HLTOGAannotvHg38v1,183 HLTOGAannotvHg38v1,230 exist chainHg38,400 chainMm10,400 chainNetHg38,403 chainNetMm10,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 netHg38,400 netMm10,400 refSeqComposite,292 exists refSeqComposite,329 exon HLTOGAannotvHg38v1,312 augustusGene,86 exon_loss_variant evaSnp,743 evaSnp4,764 evaSnp5,764 exons HLTOGAannotvHg38v1,114 chainHg38,48 chainMm10,48 chainNetHg38,51 chainNetMm10,51 genscan,44 netHg38,48 netMm10,48 transMapEnsemblV5,739 transMapEstV5,708 transMapRefSeqV5,708 transMapRnaV5,708 transMapV5,814 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,661 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense intronEst,107 transMapEnsemblV5,295 transMapEstV5,264 transMapRefSeqV5,264 transMapRnaV5,264 transMapV5,370 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 evaSnp,947 evaSnp4,988 evaSnp5,988 refSeqComposite,1302 uniprot,1716 expressed est,17 est,191 intronEst,19 intronEst,272 mrna,137 xenoMrna,212 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,549 transMapEstV5,518 transMapRefSeqV5,518 transMapRnaV5,518 transMapV5,624 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1532 extracted nestedRepeats,23 extracting tanDups,187 f chainHg38,1023 chainMm10,1023 chainNetHg38,1026 chainNetMm10,1026 evaSnp,1118 evaSnp4,1163 evaSnp5,1163 gold,154 netHg38,1023 netMm10,1023 refGene,365 refSeqComposite,1752 xenoRefGene,324 facilitate genscan,106 uniprot,1852 factor est,228 intronEst,309 mrna,174 xenoMrna,249 fair evaSnp,1142 evaSnp4,1187 evaSnp5,1187 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 ensGene,28 evaSnp,941 evaSnp,982 evaSnp4,982 evaSnp4,1023 evaSnp5,982 evaSnp5,1023 genscan,60 nestedRepeats,298 refGene,80 refSeqComposite,139 rmsk,321 transMapEnsemblV5,576 transMapEstV5,545 transMapRefSeqV5,545 transMapRnaV5,545 transMapV5,651 uniprot,1839 far uniprot,599 farrell refGene,370 refSeqComposite,1757 xenoRefGene,329 fashion evaSnp,736 evaSnp4,757 evaSnp5,757 fasta refSeqComposite,1658 feature chainHg38,241 chainMm10,241 chainNetHg38,244 chainNetMm10,244 est,386 genscan,129 intronEst,467 mrna,332 netHg38,241 netMm10,241 refGene,185 refGene,218 refSeqComposite,819 refSeqComposite,852 tanDups,83 transMapEnsemblV5,116 transMapEstV5,85 transMapRefSeqV5,85 transMapRnaV5,85 transMapV5,191 uniprot,64 uniprot,524 uniprot,613 xenoMrna,407 xenoRefGene,145 xenoRefGene,178 features evaSnp,1066 evaSnp4,1107 evaSnp5,1107 refGene,121 refSeqComposite,720 transMapEnsemblV5,651 transMapEstV5,620 transMapRefSeqV5,620 transMapRnaV5,620 transMapV5,726 uniprot,694 uniprot,1805 xenoRefGene,81 fed chainHg38,610 chainMm10,610 chainNetHg38,613 chainNetMm10,613 netHg38,610 netMm10,610 feedback refGene,47 refSeqComposite,106 uniprot,1445 uniprot,1961 felcat9 ensGene,80 evaSnp,43 evaSnp,1076 evaSnp4,43 evaSnp4,1117 evaSnp5,43 evaSnp5,1117 refSeqComposite,1549 refSeqComposite,1613 transMapEnsemblV5,203 transMapEnsemblV5,662 transMapEstV5,172 transMapEstV5,631 transMapRefSeqV5,172 transMapRefSeqV5,631 transMapRnaV5,172 transMapRnaV5,631 transMapV5,278 transMapV5,737 uniprot,1816 felcat9.ensembl.transmapv4.bigpsl transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 felcat9.ensembl.transmapv5.bigpsl transMapV5,665 felcat9.est.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 felcat9.est.transmapv5.bigpsl transMapV5,674 felcat9.fa windowmaskerSdust,62 windowmaskerSdust,71 felcat9.refseq.transmapv4.bigpsl transMapEnsemblV5,593 transMapEnsemblV5,665 transMapEstV5,562 transMapEstV5,634 transMapRefSeqV5,562 transMapRefSeqV5,634 transMapRnaV5,562 transMapRnaV5,634 felcat9.refseq.transmapv5.bigpsl transMapV5,668 transMapV5,740 felcat9.rna.transmapv4.bigpsl transMapEnsemblV5,596 transMapEstV5,565 transMapRefSeqV5,565 transMapRnaV5,565 felcat9.rna.transmapv5.bigpsl transMapV5,671 few evaSnp,686 fewer transMapV5,159 ffer windowmaskerSdust,96 field augustusGene,120 evaSnp,504 evaSnp,510 evaSnp,554 evaSnp,560 evaSnp4,522 evaSnp4,528 evaSnp4,572 evaSnp4,578 evaSnp5,522 evaSnp5,528 evaSnp5,572 evaSnp5,578 fields evaSnp,225 evaSnp4,225 evaSnp5,225 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 evaSnp,998 evaSnp,1008 evaSnp4,1039 evaSnp4,1049 evaSnp5,1039 evaSnp5,1049 gap,50 gap,66 gold,49 gold,65 refSeqComposite,1167 refSeqComposite,1376 refSeqComposite,1387 refSeqComposite,1652 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files ensGene,78 evaSnp,673 evaSnp,796 evaSnp4,691 evaSnp4,817 evaSnp5,691 evaSnp5,817 refSeqComposite,1160 refSeqComposite,1477 transMapEnsemblV5,544 transMapEnsemblV5,578 transMapEstV5,513 transMapEstV5,547 transMapRefSeqV5,513 transMapRefSeqV5,547 transMapRnaV5,513 transMapRnaV5,547 transMapV5,619 transMapV5,653 uniprot,1863 fill chainHg38,841 chainHg38,874 chainMm10,841 chainMm10,874 chainNetHg38,844 chainNetHg38,877 chainNetMm10,844 chainNetMm10,877 netHg38,841 netHg38,874 netMm10,841 netMm10,874 filled chainHg38,409 chainHg38,428 chainHg38,823 chainHg38,896 chainMm10,409 chainMm10,428 chainMm10,823 chainMm10,896 chainNetHg38,412 chainNetHg38,431 chainNetHg38,826 chainNetHg38,899 chainNetMm10,412 chainNetMm10,431 chainNetMm10,826 chainNetMm10,899 netHg38,409 netHg38,428 netHg38,823 netHg38,896 netMm10,409 netMm10,428 netMm10,823 netMm10,896 filter chainHg38,373 chainMm10,373 chainNetHg38,376 chainNetMm10,376 est,116 est,165 est,178 est,187 est,234 est,275 est,299 est,317 est,355 est,373 genscan,82 intronEst,197 intronEst,246 intronEst,259 intronEst,268 intronEst,315 intronEst,356 intronEst,380 intronEst,398 intronEst,436 intronEst,454 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netHg38,373 netMm10,373 uniprot,187 uniprot,664 xenoMrna,137 xenoMrna,186 xenoMrna,199 xenoMrna,208 xenoMrna,255 xenoMrna,296 xenoMrna,320 xenoMrna,338 xenoMrna,376 xenoMrna,394 filtered est,338 evaSnp,267 evaSnp4,267 evaSnp5,267 intronEst,419 mrna,284 transMapEnsemblV5,77 transMapEnsemblV5,349 transMapEstV5,46 transMapEstV5,318 transMapRefSeqV5,46 transMapRefSeqV5,318 transMapRnaV5,46 transMapRnaV5,318 transMapV5,45 transMapV5,424 uniprot,1480 uniprot,1499 xenoMrna,359 filtering est,277 evaSnp,178 evaSnp4,178 evaSnp5,178 intronEst,358 mrna,223 tanDups,214 transMapEnsemblV5,236 transMapEnsemblV5,304 transMapEstV5,205 transMapEstV5,273 transMapRefSeqV5,205 transMapRefSeqV5,273 transMapRnaV5,205 transMapRnaV5,273 transMapV5,311 transMapV5,379 uniprot,693 uniprot,912 uniprot,1154 xenoMrna,298 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 tanDups,345 uniprot,1153 finally evaSnp4,403 evaSnp4,732 evaSnp5,403 evaSnp5,732 find chainHg38,653 chainMm10,653 chainNetHg38,656 chainNetMm10,656 netHg38,653 netMm10,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainHg38,280 chainMm10,280 chainNetHg38,283 chainNetMm10,283 netHg38,280 netMm10,280 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 finds transMapV5,158 finger uniprot,327 finished gold,155 transMapEnsemblV5,360 transMapEstV5,329 transMapRefSeqV5,329 transMapRnaV5,329 transMapV5,435 first chainHg38,781 chainMm10,781 chainNetHg38,784 chainNetMm10,784 netHg38,781 netMm10,781 refSeqComposite,1422 uniprot,70 xenoMrna,70 fish augustusGene,201 fit chainHg38,801 chainMm10,801 chainNetHg38,804 chainNetMm10,804 nestedRepeats,175 netHg38,801 netMm10,801 refSeqComposite,391 five refSeqComposite,869 refSeqComposite,885 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,594 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 evaSnp4,727 evaSnp5,727 following chainHg38,662 chainMm10,662 chainNetHg38,665 chainNetMm10,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 evaSnp,463 evaSnp,735 evaSnp,940 evaSnp4,481 evaSnp4,756 evaSnp4,981 evaSnp5,481 evaSnp5,756 evaSnp5,981 gap,119 genscan,81 netHg38,662 netMm10,662 refSeqComposite,448 refSeqComposite,1543 tanDups,142 tanDups,262 transMapEnsemblV5,586 transMapEstV5,555 transMapRefSeqV5,555 transMapRnaV5,555 transMapV5,661 windowmaskerSdust,56 follows est,49 genscan,67 intronEst,133 mrna,30 refGene,87 refSeqComposite,891 refSeqComposite,1401 transMapEnsemblV5,97 transMapEnsemblV5,214 transMapEstV5,66 transMapEstV5,183 transMapRefSeqV5,66 transMapRefSeqV5,183 transMapRnaV5,66 transMapRnaV5,183 transMapV5,172 transMapV5,289 xenoMrna,35 xenoRefGene,47 for HLTOGAannotvHg38v1,55 HLTOGAannotvHg38v1,59 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainHg38,254 chainHg38,269 chainHg38,279 chainHg38,286 chainHg38,486 chainMm10,254 chainMm10,269 chainMm10,279 chainMm10,286 chainMm10,486 chainNetHg38,257 chainNetHg38,272 chainNetHg38,282 chainNetHg38,289 chainNetHg38,489 chainNetMm10,257 chainNetMm10,272 chainNetMm10,282 chainNetMm10,289 chainNetMm10,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 est,53 est,111 est,182 est,213 est,235 est,408 est,419 est,432 est,480 evaSnp,40 evaSnp,359 evaSnp,383 evaSnp,393 evaSnp,703 evaSnp,717 evaSnp,832 evaSnp,895 evaSnp,957 evaSnp,976 evaSnp,983 evaSnp,986 evaSnp,1009 evaSnp,1043 evaSnp,1047 evaSnp,1147 evaSnp4,40 evaSnp4,359 evaSnp4,383 evaSnp4,715 evaSnp4,853 evaSnp4,936 evaSnp4,998 evaSnp4,1017 evaSnp4,1024 evaSnp4,1027 evaSnp4,1050 evaSnp4,1084 evaSnp4,1088 evaSnp4,1192 evaSnp5,40 evaSnp5,359 evaSnp5,383 evaSnp5,715 evaSnp5,853 evaSnp5,936 evaSnp5,998 evaSnp5,1017 evaSnp5,1024 evaSnp5,1027 evaSnp5,1050 evaSnp5,1084 evaSnp5,1088 evaSnp5,1192 gap,126 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,114 intronEst,137 intronEst,192 intronEst,263 intronEst,294 intronEst,316 intronEst,489 intronEst,500 intronEst,513 intronEst,561 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netHg38,254 netHg38,269 netHg38,279 netHg38,286 netHg38,486 netMm10,254 netMm10,269 netMm10,279 netMm10,286 netMm10,486 refGene,48 refGene,64 refGene,69 refGene,91 refGene,213 refSeqComposite,41 refSeqComposite,73 refSeqComposite,92 refSeqComposite,107 refSeqComposite,123 refSeqComposite,128 refSeqComposite,235 refSeqComposite,244 refSeqComposite,330 refSeqComposite,394 refSeqComposite,452 refSeqComposite,474 refSeqComposite,537 refSeqComposite,598 refSeqComposite,719 refSeqComposite,743 refSeqComposite,847 refSeqComposite,1178 refSeqComposite,1290 refSeqComposite,1331 refSeqComposite,1441 refSeqComposite,1520 refSeqComposite,1529 refSeqComposite,1660 refSeqComposite,1688 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 tanDups,218 tanDups,268 tanDups,354 tanDups,408 tanDups,453 tanDups,489 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,101 transMapEnsemblV5,129 transMapEnsemblV5,146 transMapEnsemblV5,189 transMapEnsemblV5,215 transMapEnsemblV5,233 transMapEnsemblV5,264 transMapEnsemblV5,266 transMapEnsemblV5,284 transMapEnsemblV5,288 transMapEnsemblV5,385 transMapEnsemblV5,399 transMapEnsemblV5,408 transMapEnsemblV5,444 transMapEnsemblV5,520 transMapEnsemblV5,535 transMapEnsemblV5,564 transMapEnsemblV5,628 transMapEnsemblV5,632 transMapEnsemblV5,656 transMapEnsemblV5,799 transMapEstV5,36 transMapEstV5,70 transMapEstV5,98 transMapEstV5,115 transMapEstV5,158 transMapEstV5,184 transMapEstV5,202 transMapEstV5,233 transMapEstV5,235 transMapEstV5,253 transMapEstV5,257 transMapEstV5,354 transMapEstV5,368 transMapEstV5,377 transMapEstV5,413 transMapEstV5,489 transMapEstV5,504 transMapEstV5,533 transMapEstV5,597 transMapEstV5,601 transMapEstV5,625 transMapEstV5,768 transMapRefSeqV5,36 transMapRefSeqV5,70 transMapRefSeqV5,98 transMapRefSeqV5,115 transMapRefSeqV5,158 transMapRefSeqV5,184 transMapRefSeqV5,202 transMapRefSeqV5,233 transMapRefSeqV5,235 transMapRefSeqV5,253 transMapRefSeqV5,257 transMapRefSeqV5,354 transMapRefSeqV5,368 transMapRefSeqV5,377 transMapRefSeqV5,413 transMapRefSeqV5,489 transMapRefSeqV5,504 transMapRefSeqV5,533 transMapRefSeqV5,597 transMapRefSeqV5,601 transMapRefSeqV5,625 transMapRefSeqV5,768 transMapRnaV5,36 transMapRnaV5,70 transMapRnaV5,98 transMapRnaV5,115 transMapRnaV5,158 transMapRnaV5,184 transMapRnaV5,202 transMapRnaV5,233 transMapRnaV5,235 transMapRnaV5,253 transMapRnaV5,257 transMapRnaV5,354 transMapRnaV5,368 transMapRnaV5,377 transMapRnaV5,413 transMapRnaV5,489 transMapRnaV5,504 transMapRnaV5,533 transMapRnaV5,597 transMapRnaV5,601 transMapRnaV5,625 transMapRnaV5,768 transMapV5,35 transMapV5,61 transMapV5,95 transMapV5,97 transMapV5,150 transMapV5,176 transMapV5,204 transMapV5,221 transMapV5,264 transMapV5,290 transMapV5,308 transMapV5,339 transMapV5,341 transMapV5,359 transMapV5,363 transMapV5,460 transMapV5,474 transMapV5,483 transMapV5,519 transMapV5,595 transMapV5,610 transMapV5,639 transMapV5,703 transMapV5,707 transMapV5,731 transMapV5,874 ucscToINSDC,45 ucscToRefSeq,39 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoMrna,39 xenoMrna,62 xenoMrna,132 xenoMrna,203 xenoMrna,234 xenoMrna,256 xenoMrna,420 xenoMrna,433 xenoMrna,446 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 form uniprot,1665 format chainHg38,601 chainMm10,601 chainNetHg38,604 chainNetMm10,604 ensGene,77 ensGene,97 evaSnp,804 evaSnp4,825 evaSnp5,825 gap,62 gold,61 netHg38,601 netMm10,601 refSeqComposite,1168 refSeqComposite,1357 refSeqComposite,1377 refSeqComposite,1403 refSeqComposite,1417 refSeqComposite,1564 refSeqComposite,1578 refSeqComposite,1586 refSeqComposite,1659 transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 formats refSeqComposite,1177 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainHg38,435 chainMm10,435 chainNetHg38,438 chainNetMm10,438 netHg38,435 netMm10,435 found augustusGene,100 ensGene,139 evaSnp,937 evaSnp,1055 evaSnp4,978 evaSnp4,1096 evaSnp5,978 evaSnp5,1096 gold,137 mrna,412 refSeqComposite,1192 refSeqComposite,1390 refSeqComposite,1675 refSeqComposite,1700 tanDups,92 tanDups,185 tanDups,259 transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 xenoMrna,486 four chainHg38,503 chainMm10,503 chainNetHg38,506 chainNetMm10,506 netHg38,503 netMm10,503 xenoMrna,117 fragments est,39 gold,4 intronEst,51 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 frameshift_variant evaSnp,744 evaSnp4,765 evaSnp5,765 free uniprot,1435 from HLTOGAannotvHg38v1,21 HLTOGAannotvHg38v1,94 HLTOGAannotvHg38v1,330 augustusGene,19 chainHg38,173 chainHg38,298 chainHg38,555 chainHg38,577 chainHg38,758 chainHg38,931 chainHg38,963 chainMm10,173 chainMm10,298 chainMm10,555 chainMm10,577 chainMm10,758 chainMm10,931 chainMm10,963 chainNetHg38,176 chainNetHg38,301 chainNetHg38,558 chainNetHg38,580 chainNetHg38,761 chainNetHg38,934 chainNetHg38,966 chainNetMm10,176 chainNetMm10,301 chainNetMm10,558 chainNetMm10,580 chainNetMm10,761 chainNetMm10,934 chainNetMm10,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 est,404 est,452 est,473 est,583 est,601 est,645 est,728 evaSnp,8 evaSnp,32 evaSnp,645 evaSnp,663 evaSnp,852 evaSnp,879 evaSnp,889 evaSnp,965 evaSnp,1003 evaSnp,1033 evaSnp,1091 evaSnp4,8 evaSnp4,32 evaSnp4,663 evaSnp4,681 evaSnp4,873 evaSnp4,901 evaSnp4,912 evaSnp4,1006 evaSnp4,1044 evaSnp4,1074 evaSnp4,1132 evaSnp5,8 evaSnp5,32 evaSnp5,663 evaSnp5,681 evaSnp5,873 evaSnp5,901 evaSnp5,912 evaSnp5,1006 evaSnp5,1044 evaSnp5,1074 evaSnp5,1132 gap,47 genscan,15 gold,3 gold,46 intronEst,485 intronEst,533 intronEst,554 intronEst,664 intronEst,682 intronEst,726 intronEst,812 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netHg38,173 netHg38,298 netHg38,555 netHg38,577 netHg38,758 netHg38,931 netHg38,963 netMm10,173 netMm10,298 netMm10,555 netMm10,577 netMm10,758 netMm10,931 netMm10,963 refGene,28 refGene,205 refGene,324 refSeqComposite,5 refSeqComposite,25 refSeqComposite,288 refSeqComposite,294 refSeqComposite,422 refSeqComposite,482 refSeqComposite,839 refSeqComposite,1099 refSeqComposite,1154 refSeqComposite,1163 refSeqComposite,1327 refSeqComposite,1482 refSeqComposite,1510 refSeqComposite,1523 refSeqComposite,1571 refSeqComposite,1592 refSeqComposite,1606 refSeqComposite,1713 rmsk,86 tanDups,170 transMapEnsemblV5,29 transMapEnsemblV5,157 transMapEnsemblV5,555 transMapEnsemblV5,618 transMapEnsemblV5,683 transMapEstV5,27 transMapEstV5,126 transMapEstV5,524 transMapEstV5,587 transMapEstV5,652 transMapRefSeqV5,27 transMapRefSeqV5,126 transMapRefSeqV5,524 transMapRefSeqV5,587 transMapRefSeqV5,652 transMapRnaV5,27 transMapRnaV5,126 transMapRnaV5,524 transMapRnaV5,587 transMapRnaV5,652 transMapV5,26 transMapV5,111 transMapV5,232 transMapV5,630 transMapV5,693 transMapV5,758 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoMrna,5 xenoMrna,24 xenoMrna,520 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainHg38,235 chainHg38,379 chainMm10,235 chainMm10,379 chainNetHg38,238 chainNetHg38,382 chainNetMm10,238 chainNetMm10,382 nestedRepeats,118 netHg38,235 netHg38,379 netMm10,235 netMm10,379 rmsk,140 tanDups,50 transMapEnsemblV5,52 transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,265 functional HLTOGAannotvHg38v1,162 HLTOGAannotvHg38v1,192 HLTOGAannotvHg38v1,269 HLTOGAannotvHg38v1,292 evaSnp,254 evaSnp,286 evaSnp,295 evaSnp,409 evaSnp,806 evaSnp4,254 evaSnp4,286 evaSnp4,295 evaSnp4,427 evaSnp4,827 evaSnp5,254 evaSnp5,286 evaSnp5,295 evaSnp5,427 evaSnp5,827 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 evaSnp,530 evaSnp,577 evaSnp,1126 evaSnp4,548 evaSnp4,595 evaSnp4,1171 evaSnp5,548 evaSnp5,595 evaSnp5,1171 gc5BaseBw,20 microsat,115 refSeqComposite,900 refSeqComposite,952 refSeqComposite,1076 simpleRepeat,75 tanDups,280 g-31-125100-114 chainHg38,670 chainMm10,670 chainNetHg38,673 chainNetMm10,673 netHg38,670 netMm10,670 ga evaSnp,527 evaSnp4,545 evaSnp5,545 galgal5 evaSnp4,921 evaSnp5,921 galgal6 HLTOGAannotvHg38v1,58 gambiae augustusGene,219 gap chainHg38,76 chainHg38,86 chainHg38,185 chainHg38,472 chainHg38,484 chainHg38,507 chainHg38,525 chainHg38,540 chainHg38,557 chainHg38,694 chainHg38,825 chainMm10,76 chainMm10,86 chainMm10,185 chainMm10,472 chainMm10,484 chainMm10,507 chainMm10,525 chainMm10,540 chainMm10,557 chainMm10,694 chainMm10,825 chainNetHg38,79 chainNetHg38,89 chainNetHg38,188 chainNetHg38,475 chainNetHg38,487 chainNetHg38,510 chainNetHg38,528 chainNetHg38,543 chainNetHg38,560 chainNetHg38,697 chainNetHg38,828 chainNetMm10,79 chainNetMm10,89 chainNetMm10,188 chainNetMm10,475 chainNetMm10,487 chainNetMm10,510 chainNetMm10,528 chainNetMm10,543 chainNetMm10,560 chainNetMm10,697 chainNetMm10,828 est,427 gap,1 gap,2 gap,90 gap,101 gap,114 intronEst,508 mrna,366 netHg38,76 netHg38,86 netHg38,185 netHg38,472 netHg38,484 netHg38,507 netHg38,525 netHg38,540 netHg38,557 netHg38,694 netHg38,825 netMm10,76 netMm10,86 netMm10,185 netMm10,472 netMm10,484 netMm10,507 netMm10,525 netMm10,540 netMm10,557 netMm10,694 netMm10,825 refSeqComposite,926 refSeqComposite,959 refSeqComposite,1015 refSeqComposite,1017 tanDups,18 tanDups,29 tanDups,42 tanDups,95 tanDups,112 tanDups,131 tanDups,144 tanDups,163 tanDups,180 tanDups,195 tanDups,370 tanDups,376 tanDups,464 transMapEnsemblV5,141 transMapEstV5,110 transMapRefSeqV5,110 transMapRnaV5,110 transMapV5,216 xenoMrna,441 gapless chainHg38,637 chainMm10,637 chainNetHg38,640 chainNetMm10,640 netHg38,637 netMm10,637 gaps HLTOGAannotvHg38v1,210 chainHg38,82 chainHg38,93 chainHg38,104 chainHg38,138 chainHg38,162 chainHg38,207 chainHg38,218 chainHg38,399 chainHg38,421 chainHg38,448 chainHg38,880 chainHg38,886 chainMm10,82 chainMm10,93 chainMm10,104 chainMm10,138 chainMm10,162 chainMm10,207 chainMm10,218 chainMm10,399 chainMm10,421 chainMm10,448 chainMm10,880 chainMm10,886 chainNetHg38,85 chainNetHg38,96 chainNetHg38,107 chainNetHg38,141 chainNetHg38,165 chainNetHg38,210 chainNetHg38,221 chainNetHg38,402 chainNetHg38,424 chainNetHg38,451 chainNetHg38,883 chainNetHg38,889 chainNetMm10,85 chainNetMm10,96 chainNetMm10,107 chainNetMm10,141 chainNetMm10,165 chainNetMm10,210 chainNetMm10,221 chainNetMm10,402 chainNetMm10,424 chainNetMm10,451 chainNetMm10,883 chainNetMm10,889 gap,12 gap,42 gap,67 gap,123 gap,125 gap,148 gold,95 netHg38,82 netHg38,93 netHg38,104 netHg38,138 netHg38,162 netHg38,207 netHg38,218 netHg38,399 netHg38,421 netHg38,448 netHg38,880 netHg38,886 netMm10,82 netMm10,93 netMm10,104 netMm10,138 netMm10,162 netMm10,207 netMm10,218 netMm10,399 netMm10,421 netMm10,448 netMm10,880 netMm10,886 refSeqComposite,929 refSeqComposite,1020 tanDups,65 tanDups,109 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb evaSnp,1075 evaSnp4,1116 evaSnp5,1116 refSeqComposite,1548 transMapEnsemblV5,661 transMapEstV5,630 transMapRefSeqV5,630 transMapRnaV5,630 transMapV5,736 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 evaSnp,633 evaSnp4,651 evaSnp5,651 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank est,22 est,646 est,757 est,781 intronEst,24 intronEst,727 intronEst,841 intronEst,865 mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 transMapEnsemblV5,171 transMapEnsemblV5,174 transMapEstV5,16 transMapEstV5,140 transMapEstV5,143 transMapRefSeqV5,140 transMapRefSeqV5,143 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,140 transMapRnaV5,143 transMapV5,246 transMapV5,249 uniprot,376 xenoMrna,6 xenoMrna,23 xenoMrna,549 xenoMrna,573 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,707 transMapEstV5,676 transMapRefSeqV5,676 transMapRnaV5,676 transMapV5,782 uniprot,730 gene HLTOGAannotvHg38v1,13 HLTOGAannotvHg38v1,30 HLTOGAannotvHg38v1,47 HLTOGAannotvHg38v1,357 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 evaSnp,381 evaSnp,387 evaSnp,708 evaSnp,1112 evaSnp4,381 evaSnp4,387 evaSnp4,1157 evaSnp5,381 evaSnp5,387 evaSnp5,1157 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqGenomicDiff,14 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refGene,13 refGene,49 refGene,75 refGene,92 refGene,146 refGene,161 refGene,166 refGene,194 refGene,223 refSeqComposite,9 refSeqComposite,108 refSeqComposite,134 refSeqComposite,410 refSeqComposite,540 refSeqComposite,558 refSeqComposite,599 refSeqComposite,767 refSeqComposite,785 refSeqComposite,797 refSeqComposite,828 refSeqComposite,857 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,390 transMapEnsemblV5,773 transMapEstV5,10 transMapEstV5,359 transMapEstV5,742 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,359 transMapRefSeqV5,742 transMapRnaV5,11 transMapRnaV5,359 transMapRnaV5,742 transMapV5,9 transMapV5,17 transMapV5,465 transMapV5,848 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-inactivating HLTOGAannotvHg38v1,156 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred ensGene,76 refSeqComposite,1173 refSeqComposite,1402 refSeqComposite,1577 genepredtogtf refSeqComposite,1589 refSeqComposite,1612 refSeqComposite,1619 general est,529 evaSnp,298 evaSnp4,298 evaSnp5,298 intronEst,610 generally rmsk,72 uniprot,248 generate est,640 intronEst,721 nestedRepeats,261 nestedRepeats,320 rmsk,343 tanDups,264 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 nestedRepeats,282 refGene,328 refSeqComposite,481 refSeqComposite,1199 refSeqComposite,1715 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes HLTOGAannotvHg38v1,11 HLTOGAannotvHg38v1,36 HLTOGAannotvHg38v1,101 augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 est,42 evaSnp4,401 evaSnp4,730 evaSnp5,401 evaSnp5,730 genscan,2 genscan,6 genscan,59 intronEst,54 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqGenomicDiff,12 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refGene,11 refGene,18 refGene,26 refGene,79 refGene,232 refGene,240 refGene,251 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,23 refSeqComposite,138 refSeqComposite,237 refSeqComposite,431 refSeqComposite,506 refSeqComposite,1211 refSeqComposite,1222 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,170 transMapEnsemblV5,184 transMapEnsemblV5,290 transMapEnsemblV5,803 transMapEstV5,8 transMapEstV5,57 transMapEstV5,139 transMapEstV5,153 transMapEstV5,259 transMapEstV5,772 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,139 transMapRefSeqV5,153 transMapRefSeqV5,259 transMapRefSeqV5,772 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,139 transMapRnaV5,153 transMapRnaV5,259 transMapRnaV5,772 transMapV5,7 transMapV5,58 transMapV5,72 transMapV5,245 transMapV5,259 transMapV5,365 transMapV5,878 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic evaSnp,6 evaSnp4,6 evaSnp5,6 nestedRepeats,52 rmsk,88 genome HLTOGAannotvHg38v1,22 HLTOGAannotvHg38v1,64 HLTOGAannotvHg38v1,71 augustusGene,31 chainHg38,19 chainHg38,73 chainHg38,202 chainHg38,275 chainHg38,288 chainHg38,779 chainHg38,1100 chainMm10,19 chainMm10,73 chainMm10,202 chainMm10,275 chainMm10,288 chainMm10,779 chainMm10,1100 chainNetHg38,22 chainNetHg38,76 chainNetHg38,205 chainNetHg38,278 chainNetHg38,291 chainNetHg38,782 chainNetHg38,1103 chainNetMm10,22 chainNetMm10,76 chainNetMm10,205 chainNetMm10,278 chainNetMm10,291 chainNetMm10,782 chainNetMm10,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 est,25 est,651 est,804 evaSnp,44 evaSnp,1020 evaSnp4,44 evaSnp4,1061 evaSnp5,44 evaSnp5,1061 gap,18 gap,20 gold,20 gold,22 gold,150 intronEst,27 intronEst,37 intronEst,732 intronEst,888 mrna,23 mrna,391 mrna,521 ncbiRefSeqGenomicDiff,11 nestedRepeats,405 netHg38,19 netHg38,73 netHg38,202 netHg38,275 netHg38,288 netHg38,779 netHg38,1100 netMm10,19 netMm10,73 netMm10,202 netMm10,275 netMm10,288 netMm10,779 netMm10,1100 refGene,263 refGene,347 refSeqComposite,56 refSeqComposite,290 refSeqComposite,298 refSeqComposite,307 refSeqComposite,325 refSeqComposite,369 refSeqComposite,442 refSeqComposite,464 refSeqComposite,496 refSeqComposite,877 refSeqComposite,924 refSeqComposite,974 refSeqComposite,1060 refSeqComposite,1073 refSeqComposite,1107 refSeqComposite,1120 refSeqComposite,1182 refSeqComposite,1231 refSeqComposite,1445 refSeqComposite,1734 rmsk,428 tanDups,39 tanDups,159 tanDups,271 tanDups,494 tandemDups,10 transMapEnsemblV5,36 transMapEnsemblV5,163 transMapEnsemblV5,180 transMapEnsemblV5,204 transMapEnsemblV5,333 transMapEnsemblV5,344 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,472 transMapEnsemblV5,605 transMapEnsemblV5,743 transMapEstV5,34 transMapEstV5,132 transMapEstV5,149 transMapEstV5,173 transMapEstV5,302 transMapEstV5,313 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,441 transMapEstV5,574 transMapEstV5,712 transMapRefSeqV5,34 transMapRefSeqV5,132 transMapRefSeqV5,149 transMapRefSeqV5,173 transMapRefSeqV5,302 transMapRefSeqV5,313 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,441 transMapRefSeqV5,574 transMapRefSeqV5,712 transMapRnaV5,34 transMapRnaV5,132 transMapRnaV5,149 transMapRnaV5,173 transMapRnaV5,302 transMapRnaV5,313 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,441 transMapRnaV5,574 transMapRnaV5,712 transMapV5,33 transMapV5,84 transMapV5,238 transMapV5,255 transMapV5,279 transMapV5,408 transMapV5,419 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,547 transMapV5,680 transMapV5,818 ucscToINSDC,18 ucscToRefSeq,13 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoMrna,466 xenoMrna,596 xenoRefGene,223 xenoRefGene,306 genome-wide refSeqComposite,1497 genome.bed uniprot,1935 uniprot,1937 genomes chainHg38,25 chainHg38,582 chainHg38,1062 chainMm10,25 chainMm10,582 chainMm10,1062 chainNetHg38,28 chainNetHg38,585 chainNetHg38,1065 chainNetMm10,28 chainNetMm10,585 chainNetMm10,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netHg38,25 netHg38,582 netHg38,1062 netMm10,25 netMm10,582 netMm10,1062 refGene,416 refSeqComposite,569 refSeqComposite,1803 rmsk,392 rmsk,406 transMapEnsemblV5,361 transMapEnsemblV5,369 transMapEstV5,330 transMapEstV5,338 transMapRefSeqV5,330 transMapRefSeqV5,338 transMapRnaV5,330 transMapRnaV5,338 transMapV5,436 transMapV5,444 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,375 genomic HLTOGAannotvHg38v1,122 chainHg38,491 chainHg38,1014 chainHg38,1030 chainMm10,491 chainMm10,1014 chainMm10,1030 chainNetHg38,494 chainNetHg38,1017 chainNetHg38,1033 chainNetMm10,494 chainNetMm10,1017 chainNetMm10,1033 est,88 est,406 est,607 est,717 evaSnp,197 evaSnp,855 evaSnp,865 evaSnp,893 evaSnp,1145 evaSnp4,197 evaSnp4,876 evaSnp4,886 evaSnp4,916 evaSnp4,1190 evaSnp5,197 evaSnp5,876 evaSnp5,886 evaSnp5,916 evaSnp5,1190 genscan,92 genscan,218 intronEst,72 intronEst,169 intronEst,487 intronEst,688 intronEst,798 mrna,343 mrna,433 netHg38,491 netHg38,1014 netHg38,1030 netMm10,491 netMm10,1014 netMm10,1030 refGene,202 refGene,313 refSeqComposite,836 refSeqComposite,904 refSeqComposite,928 refSeqComposite,1019 refSeqComposite,1077 refSeqComposite,1281 transMapEnsemblV5,127 transMapEstV5,96 transMapRefSeqV5,96 transMapRnaV5,96 transMapV5,202 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoMrna,100 xenoMrna,418 xenoMrna,508 xenoRefGene,162 xenoRefGene,273 genomics chainHg38,11 chainMm10,11 chainNetHg38,14 chainNetHg38Viewchain,12 chainNetHg38Viewnet,12 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netHg38,11 netMm10,11 tanDups,480 tanDups,487 tanDups,511 transMapEnsemblV5,742 transMapEnsemblV5,797 transMapEstV5,711 transMapEstV5,766 transMapRefSeqV5,711 transMapRefSeqV5,766 transMapRnaV5,711 transMapRnaV5,766 transMapV5,817 transMapV5,872 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,111 gertz windowmaskerSdust,92 gff refSeqComposite,1166 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 github.com HLTOGAannotvHg38v1,331 give transMapEnsemblV5,437 transMapEstV5,406 transMapRefSeqV5,406 transMapRnaV5,406 transMapV5,512 xenoMrna,110 given evaSnp,1069 evaSnp4,1110 evaSnp5,1110 refSeqComposite,1537 transMapEnsemblV5,481 transMapEnsemblV5,654 transMapEstV5,450 transMapEstV5,623 transMapRefSeqV5,450 transMapRefSeqV5,623 transMapRnaV5,450 transMapRnaV5,623 transMapV5,556 transMapV5,729 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 gkab960 evaSnp,1156 evaSnp,1160 evaSnp4,1201 evaSnp4,1205 evaSnp5,1201 evaSnp5,1205 global transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,374 go est,414 est,435 genscan,113 intronEst,495 intronEst,516 mrna,351 mrna,374 refGene,219 refSeqComposite,853 uniprot,1412 xenoMrna,426 xenoMrna,449 xenoRefGene,179 gold gold,90 gold,104 goldenpath uniprot,1907 gr refGene,361 refSeqComposite,1748 xenoRefGene,320 graph evaSnp,173 evaSnp4,173 evaSnp5,173 gc5BaseBw,59 gc5BaseBw,78 graphical chainHg38,438 chainMm10,438 chainNetHg38,441 chainNetMm10,441 evaSnp,59 evaSnp,214 evaSnp4,59 evaSnp4,214 evaSnp5,59 evaSnp5,214 gold,129 netHg38,438 netMm10,438 rmsk,211 grch38 chainHg38,6 chainHg38,68 chainHg38,302 chainNetHg38,7 chainNetHg38,71 chainNetHg38,305 chainNetHg38Viewchain,5 chainNetHg38Viewnet,5 netHg38,6 netHg38,68 netHg38,302 grcm38 chainMm10,6 chainMm10,68 chainMm10,302 chainNetMm10,7 chainNetMm10,71 chainNetMm10,305 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainHg38,629 chainMm10,629 chainNetHg38,632 chainNetMm10,632 netHg38,629 netMm10,629 refSeqComposite,387 refSeqComposite,447 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 evaSnp,580 evaSnp4,598 evaSnp4,898 evaSnp4,910 evaSnp5,598 evaSnp5,898 evaSnp5,910 intronEst,88 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 refSeqComposite,1563 refSeqComposite,1573 refSeqComposite,1585 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,194 transMapEstV5,163 transMapRefSeqV5,163 transMapRnaV5,163 transMapV5,269 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 happens tanDups,388 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainHg38,933 chainHg38,1090 chainMm10,933 chainMm10,1090 chainNetHg38,936 chainNetHg38,1093 chainNetMm10,936 chainNetMm10,1093 netHg38,933 netHg38,1090 netMm10,933 netMm10,1090 harris chainHg38,1007 chainMm10,1007 chainNetHg38,1010 chainNetMm10,1010 netHg38,1007 netMm10,1007 hart refGene,372 refSeqComposite,1759 xenoRefGene,331 has est,114 intronEst,195 mrna,60 nestedRepeats,246 refGene,106 refSeqComposite,613 refSeqComposite,634 refSeqComposite,670 refSeqComposite,682 refSeqComposite,695 refSeqComposite,814 transMapV5,145 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoMrna,135 xenoRefGene,66 haussler augustusGene,292 chainHg38,968 chainHg38,1048 chainHg38,1092 chainMm10,968 chainMm10,1048 chainMm10,1092 chainNetHg38,971 chainNetHg38,1051 chainNetHg38,1095 chainNetMm10,971 chainNetMm10,1051 chainNetMm10,1095 evaSnp,1187 evaSnp4,1232 evaSnp5,1232 netHg38,968 netHg38,1048 netHg38,1092 netMm10,968 netMm10,1048 netMm10,1092 transMapEnsemblV5,760 transMapEnsemblV5,794 transMapEstV5,729 transMapEstV5,763 transMapRefSeqV5,729 transMapRefSeqV5,763 transMapRnaV5,729 transMapRnaV5,763 transMapV5,835 transMapV5,869 have chainHg38,567 chainMm10,567 chainNetHg38,570 chainNetMm10,570 evaSnp,337 evaSnp,654 evaSnp4,337 evaSnp4,672 evaSnp5,337 evaSnp5,672 intronEst,6 intronEst,87 nestedRepeats,88 netHg38,567 netMm10,567 rmsk,69 rmsk,108 tanDups,394 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 est,690 est,699 intronEst,771 intronEst,780 mrna,406 mrna,415 refGene,286 refGene,295 refSeqComposite,1254 refSeqComposite,1263 xenoMrna,480 xenoMrna,490 xenoRefGene,246 xenoRefGene,255 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 refGene,65 refSeqComposite,124 helpful est,142 intronEst,223 mrna,88 xenoMrna,163 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 hence xenoMrna,89 here evaSnp,1056 evaSnp4,1097 evaSnp5,1097 refSeqComposite,990 refSeqComposite,1193 refSeqComposite,1464 refSeqComposite,1486 refSeqComposite,1680 rmsk,127 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEnsemblV5,641 transMapEstV5,105 transMapEstV5,119 transMapEstV5,610 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRefSeqV5,610 transMapRnaV5,105 transMapRnaV5,119 transMapRnaV5,610 transMapV5,211 transMapV5,225 transMapV5,716 uniprot,1795 xenoMrna,84 hg.conf refSeqComposite,1635 hg19 refSeqComposite,570 uniprot,847 uniprot,860 hg38 HLTOGAannotvHg38v1,3 HLTOGAannotvHg38v1,8 HLTOGAannotvHg38v1,54 chainHg38,7 chainHg38,69 chainHg38,303 chainNetHg38,8 chainNetHg38,72 chainNetHg38,306 chainNetHg38Viewchain,6 chainNetHg38Viewnet,6 netHg38,7 netHg38,69 netHg38,303 refSeqComposite,514 refSeqComposite,572 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 evaSnp,1074 evaSnp4,1115 evaSnp5,1115 refSeqComposite,1547 transMapEnsemblV5,660 transMapEstV5,629 transMapRefSeqV5,629 transMapRnaV5,629 transMapV5,735 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,546 hgvs refSeqComposite,899 refSeqComposite,912 refSeqComposite,951 refSeqComposite,980 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1070 refSeqComposite,1090 hgvs.p evaSnp,333 evaSnp,354 evaSnp4,333 evaSnp4,354 evaSnp5,333 evaSnp5,354 hiatt refGene,362 refSeqComposite,1749 xenoRefGene,321 hidden augustusGene,324 uniprot,182 uniprot,223 hide refGene,230 refSeqComposite,174 uniprot,659 uniprot,667 xenoRefGene,190 hierarchy chainHg38,816 chainMm10,816 chainNetHg38,819 chainNetMm10,819 netHg38,816 netMm10,816 high gc5BaseBw,29 transMapV5,118 higher chainHg38,848 chainMm10,848 chainNetHg38,851 chainNetMm10,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netHg38,848 netMm10,848 rmsk,230 transMapV5,146 higher-level chainHg38,865 chainMm10,865 chainNetHg38,868 chainNetMm10,868 netHg38,865 netMm10,865 higher-scoring chainHg38,809 chainHg38,828 chainMm10,809 chainMm10,828 chainNetHg38,812 chainNetHg38,831 chainNetMm10,812 chainNetMm10,831 netHg38,809 netHg38,828 netMm10,809 netMm10,828 highest est,692 intronEst,773 mrna,408 refGene,288 refSeqComposite,1256 uniprot,948 uniprot,1113 xenoMrna,482 xenoRefGene,248 highest-scoring chainHg38,390 chainHg38,775 chainMm10,390 chainMm10,775 chainNetHg38,393 chainNetHg38,778 chainNetMm10,393 chainNetMm10,778 netHg38,390 netHg38,775 netMm10,390 netMm10,775 highlight est,333 gc5BaseBw,49 intronEst,414 mrna,279 xenoMrna,354 highlighted est,303 est,321 intronEst,384 intronEst,402 mrna,249 mrna,267 uniprot,580 xenoMrna,324 xenoMrna,342 highly microsat,40 hilgers HLTOGAannotvHg38v1,352 hiller HLTOGAannotvHg38v1,322 hillerlab HLTOGAannotvHg38v1,332 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainHg38,1044 chainMm10,1044 chainNetHg38,1047 chainNetMm10,1047 evaSnp,826 evaSnp,1169 evaSnp4,847 evaSnp4,1214 evaSnp5,847 evaSnp5,1214 netHg38,1044 netMm10,1044 hiram gc5BaseBw,82 tanDups,506 ucscToINSDC,51 ucscToRefSeq,45 his chainHg38,942 chainMm10,942 chainNetHg38,945 chainNetMm10,945 netHg38,942 netMm10,942 homology-based HLTOGAannotvHg38v1,26 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hosts evaSnp,52 evaSnp4,52 evaSnp5,52 hou chainHg38,921 chainMm10,921 chainNetHg38,924 chainNetMm10,924 netHg38,921 netMm10,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainHg38,876 chainHg38,893 chainMm10,876 chainMm10,893 chainNetHg38,879 chainNetHg38,896 chainNetMm10,879 chainNetMm10,896 evaSnp,929 evaSnp4,970 evaSnp5,970 netHg38,876 netHg38,893 netMm10,876 netMm10,893 refSeqComposite,96 rmsk,121 tanDups,79 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,485 transMapEstV5,454 transMapRefSeqV5,454 transMapRnaV5,454 transMapV5,560 hox refSeqComposite,414 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1546 rmsk,355 transMapEnsemblV5,659 transMapEstV5,628 transMapRefSeqV5,628 transMapRnaV5,628 transMapV5,734 uniprot,1813 https evaSnp,1073 evaSnp4,1114 evaSnp5,1114 uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human HLTOGAannotvHg38v1,7 HLTOGAannotvHg38v1,53 augustusGene,205 augustusGene,210 augustusGene,276 chainHg38,1 chainHg38,3 chainHg38,65 chainHg38,96 chainHg38,148 chainHg38,266 chainHg38,291 chainHg38,572 chainHg38,620 chainHg38,1061 chainMm10,1061 chainNetHg38,1 chainNetHg38,4 chainNetHg38,68 chainNetHg38,99 chainNetHg38,151 chainNetHg38,269 chainNetHg38,294 chainNetHg38,575 chainNetHg38,623 chainNetHg38,1064 chainNetHg38Viewchain,2 chainNetHg38Viewnet,2 chainNetMm10,1064 genscan,217 nestedRepeats,404 netHg38,1 netHg38,3 netHg38,65 netHg38,96 netHg38,148 netHg38,266 netHg38,291 netHg38,572 netHg38,620 netHg38,1061 netMm10,1061 refSeqComposite,245 refSeqComposite,297 refSeqComposite,557 refSeqComposite,568 refSeqComposite,1072 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,362 transMapEnsemblV5,471 transMapEnsemblV5,738 transMapEnsemblV5,806 transMapEstV5,331 transMapEstV5,440 transMapEstV5,707 transMapEstV5,775 transMapRefSeqV5,331 transMapRefSeqV5,440 transMapRefSeqV5,707 transMapRefSeqV5,775 transMapRnaV5,331 transMapRnaV5,440 transMapRnaV5,707 transMapRnaV5,775 transMapV5,104 transMapV5,133 transMapV5,437 transMapV5,546 transMapV5,813 transMapV5,881 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainHg38,1096 chainMm10,1096 chainNetHg38,1099 chainNetMm10,1099 netHg38,1096 netMm10,1096 hunt evaSnp,1119 evaSnp4,1164 evaSnp5,1164 hybridizes est,497 intronEst,578 i est,750 est,774 intronEst,834 intronEst,858 mrna,467 mrna,491 xenoMrna,542 xenoMrna,566 i.e intronEst,70 icon refSeqComposite,750 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1129 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical tanDups,4 tanDups,22 tanDups,34 tanDups,103 tanDups,287 tanDups,328 tandemDups,5 uniprot,1106 uniprot,1144 uniprot,1147 identified chainHg38,937 chainMm10,937 chainNetHg38,940 chainNetMm10,940 est,696 intronEst,777 netHg38,937 netMm10,937 refGene,292 refSeqComposite,1260 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 xenoRefGene,252 identifier evaSnp,193 evaSnp4,193 evaSnp5,193 refSeqComposite,781 refSeqComposite,800 transMapEnsemblV5,483 transMapEstV5,452 transMapRefSeqV5,452 transMapRnaV5,452 transMapV5,558 identifiers transMapEnsemblV5,384 transMapEnsemblV5,443 transMapEnsemblV5,461 transMapEstV5,353 transMapEstV5,412 transMapEstV5,430 transMapRefSeqV5,353 transMapRefSeqV5,412 transMapRefSeqV5,430 transMapRnaV5,353 transMapRnaV5,412 transMapRnaV5,430 transMapV5,459 transMapV5,518 transMapV5,536 ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 tanDups,490 identity est,694 est,702 est,714 intronEst,775 intronEst,783 intronEst,795 microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 refGene,290 refGene,298 refGene,310 refSeqComposite,1258 refSeqComposite,1266 refSeqComposite,1278 xenoMrna,484 xenoMrna,493 xenoMrna,505 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if est,276 est,288 est,304 est,340 est,357 evaSnp,250 evaSnp4,250 evaSnp4,397 evaSnp4,408 evaSnp5,250 evaSnp5,397 evaSnp5,408 gap,76 intronEst,357 intronEst,369 intronEst,385 intronEst,421 intronEst,438 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 refGene,243 tanDups,435 transMapEnsemblV5,244 transMapEstV5,213 transMapRefSeqV5,213 transMapRnaV5,213 transMapV5,319 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoMrna,297 xenoMrna,309 xenoMrna,325 xenoMrna,361 xenoMrna,378 xenoRefGene,203 ignored refSeqComposite,1451 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implements HLTOGAannotvHg38v1,73 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,770 transMapEstV5,739 transMapRefSeqV5,739 transMapRnaV5,739 transMapV5,845 improved chainHg38,1010 chainMm10,1010 chainNetHg38,1013 chainNetMm10,1013 netHg38,1010 netMm10,1010 in HLTOGAannotvHg38v1,119 HLTOGAannotvHg38v1,124 HLTOGAannotvHg38v1,137 HLTOGAannotvHg38v1,173 HLTOGAannotvHg38v1,220 HLTOGAannotvHg38v1,242 augustusGene,101 chainHg38,31 chainHg38,94 chainHg38,114 chainHg38,146 chainHg38,153 chainHg38,167 chainHg38,186 chainHg38,189 chainHg38,228 chainHg38,249 chainHg38,294 chainHg38,327 chainHg38,357 chainHg38,369 chainHg38,378 chainHg38,396 chainHg38,401 chainHg38,410 chainHg38,422 chainHg38,436 chainHg38,478 chainHg38,495 chainHg38,526 chainHg38,544 chainHg38,558 chainHg38,593 chainHg38,689 chainHg38,777 chainHg38,818 chainHg38,826 chainHg38,842 chainHg38,875 chainHg38,887 chainHg38,1057 chainMm10,31 chainMm10,94 chainMm10,114 chainMm10,146 chainMm10,153 chainMm10,167 chainMm10,186 chainMm10,189 chainMm10,228 chainMm10,249 chainMm10,294 chainMm10,327 chainMm10,357 chainMm10,369 chainMm10,378 chainMm10,396 chainMm10,401 chainMm10,410 chainMm10,422 chainMm10,436 chainMm10,478 chainMm10,495 chainMm10,526 chainMm10,544 chainMm10,558 chainMm10,593 chainMm10,689 chainMm10,777 chainMm10,818 chainMm10,826 chainMm10,842 chainMm10,875 chainMm10,887 chainMm10,1057 chainNetHg38,34 chainNetHg38,97 chainNetHg38,117 chainNetHg38,149 chainNetHg38,156 chainNetHg38,170 chainNetHg38,189 chainNetHg38,192 chainNetHg38,231 chainNetHg38,252 chainNetHg38,297 chainNetHg38,330 chainNetHg38,360 chainNetHg38,372 chainNetHg38,381 chainNetHg38,399 chainNetHg38,404 chainNetHg38,413 chainNetHg38,425 chainNetHg38,439 chainNetHg38,481 chainNetHg38,498 chainNetHg38,529 chainNetHg38,547 chainNetHg38,561 chainNetHg38,596 chainNetHg38,692 chainNetHg38,780 chainNetHg38,821 chainNetHg38,829 chainNetHg38,845 chainNetHg38,878 chainNetHg38,890 chainNetHg38,1060 chainNetMm10,34 chainNetMm10,97 chainNetMm10,117 chainNetMm10,149 chainNetMm10,156 chainNetMm10,170 chainNetMm10,189 chainNetMm10,192 chainNetMm10,231 chainNetMm10,252 chainNetMm10,297 chainNetMm10,330 chainNetMm10,360 chainNetMm10,372 chainNetMm10,381 chainNetMm10,399 chainNetMm10,404 chainNetMm10,413 chainNetMm10,425 chainNetMm10,439 chainNetMm10,481 chainNetMm10,498 chainNetMm10,529 chainNetMm10,547 chainNetMm10,561 chainNetMm10,596 chainNetMm10,692 chainNetMm10,780 chainNetMm10,821 chainNetMm10,829 chainNetMm10,845 chainNetMm10,878 chainNetMm10,890 chainNetMm10,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 est,21 est,34 est,57 est,148 est,169 est,192 est,202 est,220 est,273 est,395 est,528 est,576 est,685 evaSnp,95 evaSnp,155 evaSnp,212 evaSnp,329 evaSnp,332 evaSnp,345 evaSnp,348 evaSnp,423 evaSnp,472 evaSnp,491 evaSnp,500 evaSnp,541 evaSnp,550 evaSnp,586 evaSnp,733 evaSnp,858 evaSnp,995 evaSnp4,95 evaSnp4,155 evaSnp4,212 evaSnp4,329 evaSnp4,332 evaSnp4,345 evaSnp4,348 evaSnp4,441 evaSnp4,490 evaSnp4,509 evaSnp4,518 evaSnp4,559 evaSnp4,568 evaSnp4,604 evaSnp4,754 evaSnp4,879 evaSnp4,919 evaSnp4,1036 evaSnp5,95 evaSnp5,155 evaSnp5,212 evaSnp5,329 evaSnp5,332 evaSnp5,345 evaSnp5,348 evaSnp5,441 evaSnp5,490 evaSnp5,509 evaSnp5,518 evaSnp5,559 evaSnp5,568 evaSnp5,604 evaSnp5,754 evaSnp5,879 evaSnp5,919 evaSnp5,1036 gap,13 gap,25 gap,43 gap,73 gap,151 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,27 gold,66 gold,127 gold,138 gold,146 intronEst,23 intronEst,46 intronEst,84 intronEst,98 intronEst,141 intronEst,229 intronEst,250 intronEst,273 intronEst,283 intronEst,301 intronEst,354 intronEst,476 intronEst,609 intronEst,657 intronEst,766 intronEst,802 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netHg38,31 netHg38,94 netHg38,114 netHg38,146 netHg38,153 netHg38,167 netHg38,186 netHg38,189 netHg38,228 netHg38,249 netHg38,294 netHg38,327 netHg38,357 netHg38,369 netHg38,378 netHg38,396 netHg38,401 netHg38,410 netHg38,422 netHg38,436 netHg38,478 netHg38,495 netHg38,526 netHg38,544 netHg38,558 netHg38,593 netHg38,689 netHg38,777 netHg38,818 netHg38,826 netHg38,842 netHg38,875 netHg38,887 netHg38,1057 netMm10,31 netMm10,94 netMm10,114 netMm10,146 netMm10,153 netMm10,167 netMm10,186 netMm10,189 netMm10,228 netMm10,249 netMm10,294 netMm10,327 netMm10,357 netMm10,369 netMm10,378 netMm10,396 netMm10,401 netMm10,410 netMm10,422 netMm10,436 netMm10,478 netMm10,495 netMm10,526 netMm10,544 netMm10,558 netMm10,593 netMm10,689 netMm10,777 netMm10,818 netMm10,826 netMm10,842 netMm10,875 netMm10,887 netMm10,1057 refGene,281 refSeqComposite,61 refSeqComposite,277 refSeqComposite,396 refSeqComposite,756 refSeqComposite,988 refSeqComposite,1035 refSeqComposite,1062 refSeqComposite,1139 refSeqComposite,1165 refSeqComposite,1180 refSeqComposite,1249 refSeqComposite,1296 refSeqComposite,1340 refSeqComposite,1355 refSeqComposite,1364 refSeqComposite,1374 refSeqComposite,1384 refSeqComposite,1443 refSeqComposite,1452 refSeqComposite,1467 refSeqComposite,1475 refSeqComposite,1535 refSeqComposite,1620 refSeqComposite,1657 refSeqComposite,1663 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 tanDups,14 tanDups,93 tanDups,145 tanDups,427 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,160 transMapEnsemblV5,335 transMapEnsemblV5,359 transMapEnsemblV5,367 transMapEnsemblV5,402 transMapEnsemblV5,412 transMapEnsemblV5,446 transMapEnsemblV5,492 transMapEnsemblV5,542 transMapEnsemblV5,584 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,129 transMapEstV5,304 transMapEstV5,328 transMapEstV5,336 transMapEstV5,371 transMapEstV5,381 transMapEstV5,415 transMapEstV5,461 transMapEstV5,511 transMapEstV5,553 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,129 transMapRefSeqV5,304 transMapRefSeqV5,328 transMapRefSeqV5,336 transMapRefSeqV5,371 transMapRefSeqV5,381 transMapRefSeqV5,415 transMapRefSeqV5,461 transMapRefSeqV5,511 transMapRefSeqV5,553 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,129 transMapRnaV5,304 transMapRnaV5,328 transMapRnaV5,336 transMapRnaV5,371 transMapRnaV5,381 transMapRnaV5,415 transMapRnaV5,461 transMapRnaV5,511 transMapRnaV5,553 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,76 transMapV5,235 transMapV5,410 transMapV5,434 transMapV5,442 transMapV5,477 transMapV5,487 transMapV5,521 transMapV5,567 transMapV5,617 transMapV5,659 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoMrna,22 xenoMrna,43 xenoMrna,66 xenoMrna,169 xenoMrna,190 xenoMrna,213 xenoMrna,223 xenoMrna,241 xenoMrna,294 xenoMrna,475 xenoRefGene,241 inactivating HLTOGAannotvHg38v1,185 HLTOGAannotvHg38v1,232 HLTOGAannotvHg38v1,240 HLTOGAannotvHg38v1,275 HLTOGAannotvHg38v1,305 include est,130 est,335 est,359 evaSnp,226 evaSnp4,226 evaSnp5,226 intronEst,211 intronEst,416 intronEst,440 mrna,76 mrna,281 mrna,305 refSeqComposite,187 rmsk,159 rmsk,172 xenoMrna,151 xenoMrna,356 xenoMrna,380 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 gap,129 windowmaskerSdust,26 includes refSeqComposite,216 refSeqComposite,262 refSeqComposite,346 refSeqComposite,648 rmsk,198 uniprot,1587 including est,5 intronEst,120 refSeqComposite,795 rmsk,188 tanDups,119 uniprot,1700 inclusion refSeqComposite,395 inconsistency refSeqComposite,873 incorporate refSeqComposite,660 incorrect uniprot,1361 indels evaSnp,31 evaSnp4,31 evaSnp5,31 microsat,74 independently refSeqComposite,293 indexing refSeqComposite,1462 indicate chainHg38,137 chainHg38,243 chainMm10,137 chainMm10,243 chainNetHg38,140 chainNetHg38,246 chainNetMm10,140 chainNetMm10,246 est,68 mrna,49 nestedRepeats,153 netHg38,137 netHg38,243 netMm10,137 netMm10,243 tanDups,382 xenoMrna,54 indicated evaSnp,101 evaSnp4,101 evaSnp5,101 indicates est,76 intronEst,147 intronEst,157 refGene,98 refSeqComposite,605 tanDups,98 xenoMrna,71 xenoMrna,93 xenoRefGene,58 individual chainHg38,240 chainHg38,493 chainMm10,240 chainMm10,493 chainNetHg38,243 chainNetHg38,496 chainNetMm10,243 chainNetMm10,496 evaSnp,182 evaSnp,1015 evaSnp4,182 evaSnp4,1056 evaSnp5,182 evaSnp5,1056 netHg38,240 netHg38,493 netMm10,240 netMm10,493 refSeqComposite,676 refSeqComposite,701 refSeqComposite,745 refSeqComposite,1490 transMapEnsemblV5,600 transMapEstV5,569 transMapRefSeqV5,569 transMapRnaV5,569 transMapV5,675 infer HLTOGAannotvHg38v1,19 inference HLTOGAannotvHg38v1,361 inferring HLTOGAannotvHg38v1,32 information HLTOGAannotvHg38v1,300 augustusGene,36 chainHg38,456 chainHg38,469 chainHg38,475 chainHg38,843 chainMm10,456 chainMm10,469 chainMm10,475 chainMm10,843 chainNetHg38,459 chainNetHg38,472 chainNetHg38,478 chainNetHg38,846 chainNetMm10,459 chainNetMm10,472 chainNetMm10,478 chainNetMm10,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 est,75 est,410 est,434 evaSnp,927 evaSnp,985 evaSnp4,968 evaSnp4,1026 evaSnp5,968 evaSnp5,1026 gap,34 gc5BaseBw,55 genscan,51 genscan,126 gold,36 intronEst,156 intronEst,491 intronEst,515 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netHg38,456 netHg38,469 netHg38,475 netHg38,843 netMm10,456 netMm10,469 netMm10,475 netMm10,843 refGene,71 refGene,215 refSeqComposite,130 refSeqComposite,665 refSeqComposite,849 refSeqComposite,1184 refSeqComposite,1379 refSeqComposite,1383 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,566 transMapEstV5,100 transMapEstV5,117 transMapEstV5,535 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,535 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,535 transMapV5,206 transMapV5,223 transMapV5,641 uniprot,678 uniprot,1842 uniprot,2038 xenoMrna,61 xenoMrna,422 xenoMrna,448 xenoRefGene,175 inframe_deletion evaSnp,745 evaSnp4,766 evaSnp5,766 inframe_insertion evaSnp,746 evaSnp4,767 evaSnp5,767 initial refSeqComposite,679 initiate rmsk,316 initiator_codon_variant evaSnp,747 evaSnp4,768 evaSnp5,768 initio augustusGene,4 augustusGene,17 input HLTOGAannotvHg38v1,43 uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainHg38,569 chainHg38,899 chainMm10,569 chainMm10,899 chainNetHg38,572 chainNetHg38,902 chainNetMm10,572 chainNetMm10,902 evaSnp,538 evaSnp4,556 evaSnp5,556 netHg38,569 netHg38,899 netMm10,569 netMm10,899 insertion chainHg38,152 chainMm10,152 chainNetHg38,155 chainNetMm10,155 est,439 evaSnp,531 evaSnp,568 evaSnp4,549 evaSnp4,586 evaSnp5,549 evaSnp5,586 intronEst,520 mrna,378 netHg38,152 netMm10,152 rmsk,223 xenoMrna,453 insertions evaSnp,28 evaSnp,99 evaSnp4,28 evaSnp4,99 evaSnp5,28 evaSnp5,99 nestedRepeats,86 nestedRepeats,92 refSeqComposite,945 inside uniprot,560 inspection uniprot,1653 instances evaSnp,860 evaSnp4,881 evaSnp5,881 instead refGene,158 refSeqComposite,782 xenoRefGene,118 institute nestedRepeats,55 rmsk,91 tanDups,488 tanDups,512 instructions ensGene,117 evaSnp,1046 evaSnp4,1087 evaSnp5,1087 transMapEnsemblV5,631 transMapEstV5,600 transMapRefSeqV5,600 transMapRnaV5,600 transMapV5,706 uniprot,1785 intact HLTOGAannotvHg38v1,38 HLTOGAannotvHg38v1,143 HLTOGAannotvHg38v1,166 integrates HLTOGAannotvHg38v1,29 integrating HLTOGAannotvHg38v1,356 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 evaSnp,263 evaSnp,317 evaSnp,417 evaSnp,699 evaSnp,825 evaSnp,956 evaSnp,1107 evaSnp,1193 evaSnp,1197 evaSnp4,263 evaSnp4,317 evaSnp4,435 evaSnp4,711 evaSnp4,846 evaSnp4,997 evaSnp4,1148 evaSnp4,1238 evaSnp4,1242 evaSnp5,263 evaSnp5,317 evaSnp5,435 evaSnp5,711 evaSnp5,846 evaSnp5,997 evaSnp5,1148 evaSnp5,1238 evaSnp5,1242 refSeqComposite,1312 transMapEnsemblV5,534 transMapEstV5,503 transMapRefSeqV5,503 transMapRnaV5,503 transMapV5,609 uniprot,1725 interactions uniprot,316 interactive tanDups,459 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 evaSnp,948 evaSnp4,989 evaSnp5,989 refSeqComposite,1303 transMapEnsemblV5,526 transMapEstV5,495 transMapRefSeqV5,495 transMapRnaV5,495 transMapV5,601 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 interesting tanDups,392 intergenic HLTOGAannotvHg38v1,84 evaSnp,447 evaSnp,772 evaSnp4,465 evaSnp4,793 evaSnp5,465 evaSnp5,793 genscan,47 intergenic_variant evaSnp,779 evaSnp4,800 evaSnp5,800 international est,735 intronEst,819 mrna,452 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 ucscToINSDC,5 ucscToINSDC,27 xenoMrna,527 internet nestedRepeats,279 interpreting evaSnp,55 evaSnp4,55 evaSnp5,55 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainHg38,599 chainHg38,611 chainHg38,627 chainHg38,802 chainMm10,599 chainMm10,611 chainMm10,627 chainMm10,802 chainNetHg38,602 chainNetHg38,614 chainNetHg38,630 chainNetHg38,805 chainNetMm10,602 chainNetMm10,614 chainNetMm10,630 chainNetMm10,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 est,252 est,457 est,464 est,609 evaSnp,199 evaSnp,297 evaSnp,459 evaSnp4,199 evaSnp4,297 evaSnp4,477 evaSnp5,199 evaSnp5,297 evaSnp5,477 intronEst,333 intronEst,538 intronEst,545 intronEst,690 mrna,198 netHg38,599 netHg38,611 netHg38,627 netHg38,802 netMm10,599 netMm10,611 netMm10,627 netMm10,802 uniprot,57 windowmaskerSdust,80 xenoMrna,273 intron augustusGene,88 augustusGene,330 est,658 intronEst,69 intronEst,739 intron_variant evaSnp,778 evaSnp4,799 evaSnp5,799 intronic HLTOGAannotvHg38v1,82 evaSnp,449 evaSnp,774 evaSnp4,467 evaSnp4,795 evaSnp5,467 evaSnp5,795 introns chainHg38,56 chainMm10,56 chainNetHg38,59 chainNetMm10,59 est,675 genscan,45 intronEst,756 netHg38,56 netMm10,56 refSeqComposite,936 refSeqComposite,1027 inv chainHg38,531 chainMm10,531 chainNetHg38,534 chainNetMm10,534 netHg38,531 netMm10,531 inversions chainHg38,110 chainHg38,174 chainMm10,110 chainMm10,174 chainNetHg38,113 chainNetHg38,177 chainNetMm10,113 chainNetMm10,177 netHg38,110 netHg38,174 netMm10,110 netMm10,174 invertebrate xenoMrna,20 inverted chainHg38,861 chainMm10,861 chainNetHg38,864 chainNetMm10,864 netHg38,861 netMm10,861 investigation tanDups,55 invisible refSeqComposite,1034 refSeqComposite,1061 involve chainHg38,164 chainMm10,164 chainNetHg38,167 chainNetMm10,167 netHg38,164 netMm10,164 is HLTOGAannotvHg38v1,24 HLTOGAannotvHg38v1,104 HLTOGAannotvHg38v1,135 HLTOGAannotvHg38v1,151 HLTOGAannotvHg38v1,171 HLTOGAannotvHg38v1,197 HLTOGAannotvHg38v1,218 HLTOGAannotvHg38v1,238 HLTOGAannotvHg38v1,251 HLTOGAannotvHg38v1,281 HLTOGAannotvHg38v1,287 HLTOGAannotvHg38v1,328 chainHg38,277 chainHg38,297 chainHg38,476 chainMm10,277 chainMm10,297 chainMm10,476 chainNetHg38,280 chainNetHg38,300 chainNetHg38,479 chainNetMm10,280 chainNetMm10,300 chainNetMm10,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 est,292 est,308 est,344 est,361 est,450 est,462 est,471 est,491 est,620 est,663 evaSnp,140 evaSnp,162 evaSnp,169 evaSnp,309 evaSnp,323 evaSnp,326 evaSnp,475 evaSnp,487 evaSnp,494 evaSnp,516 evaSnp,537 evaSnp,544 evaSnp,566 evaSnp,602 evaSnp,620 evaSnp,914 evaSnp,993 evaSnp,1012 evaSnp4,140 evaSnp4,162 evaSnp4,169 evaSnp4,309 evaSnp4,323 evaSnp4,326 evaSnp4,493 evaSnp4,505 evaSnp4,512 evaSnp4,534 evaSnp4,555 evaSnp4,562 evaSnp4,584 evaSnp4,620 evaSnp4,638 evaSnp4,955 evaSnp4,1034 evaSnp4,1053 evaSnp5,140 evaSnp5,162 evaSnp5,169 evaSnp5,309 evaSnp5,323 evaSnp5,326 evaSnp5,493 evaSnp5,505 evaSnp5,512 evaSnp5,534 evaSnp5,555 evaSnp5,562 evaSnp5,584 evaSnp5,620 evaSnp5,638 evaSnp5,955 evaSnp5,1034 evaSnp5,1053 gap,46 gap,91 gap,98 gap,106 gc5BaseBw,32 gold,45 gold,119 gold,125 intronEst,102 intronEst,373 intronEst,389 intronEst,425 intronEst,442 intronEst,531 intronEst,543 intronEst,552 intronEst,572 intronEst,701 intronEst,744 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netHg38,277 netHg38,297 netHg38,476 netMm10,277 netMm10,297 netMm10,476 refSeqComposite,146 refSeqComposite,242 refSeqComposite,316 refSeqComposite,533 refSeqComposite,563 refSeqComposite,574 refSeqComposite,710 refSeqComposite,1055 refSeqComposite,1198 refSeqComposite,1213 refSeqComposite,1429 refSeqComposite,1435 rmsk,95 rmsk,360 simpleRepeat,28 tanDups,44 tanDups,81 tanDups,113 tanDups,132 tanDups,152 tanDups,400 transMapEnsemblV5,39 transMapEnsemblV5,275 transMapEnsemblV5,418 transMapEnsemblV5,422 transMapEnsemblV5,434 transMapEnsemblV5,480 transMapEstV5,244 transMapEstV5,387 transMapEstV5,391 transMapEstV5,403 transMapEstV5,449 transMapRefSeqV5,244 transMapRefSeqV5,387 transMapRefSeqV5,391 transMapRefSeqV5,403 transMapRefSeqV5,449 transMapRnaV5,244 transMapRnaV5,387 transMapRnaV5,391 transMapRnaV5,403 transMapRnaV5,449 transMapV5,350 transMapV5,493 transMapV5,497 transMapV5,509 transMapV5,555 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 xenoMrna,65 xenoMrna,119 xenoMrna,125 xenoMrna,313 xenoMrna,329 xenoMrna,365 xenoMrna,382 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,451 intronEst,532 issue est,765 est,791 intronEst,849 intronEst,875 mrna,482 mrna,508 refGene,394 refGene,428 refSeqComposite,1781 refSeqComposite,1815 uniprot,2004 xenoMrna,557 xenoMrna,583 xenoRefGene,353 xenoRefGene,387 it chainHg38,89 chainHg38,276 chainHg38,530 chainHg38,542 chainMm10,89 chainMm10,276 chainMm10,530 chainMm10,542 chainNetHg38,92 chainNetHg38,279 chainNetHg38,533 chainNetHg38,545 chainNetMm10,92 chainNetMm10,279 chainNetMm10,533 chainNetMm10,545 est,90 est,104 est,513 evaSnp,913 evaSnp4,954 evaSnp5,954 gap,97 genscan,143 intronEst,171 intronEst,185 intronEst,594 netHg38,89 netHg38,276 netHg38,530 netHg38,542 netMm10,89 netMm10,276 netMm10,530 netMm10,542 refSeqComposite,573 refSeqComposite,1299 tanDups,90 tanDups,389 tanDups,444 uniprot,228 uniprot,625 uniprot,1586 item evaSnp,211 evaSnp,304 evaSnp4,211 evaSnp4,304 evaSnp5,211 evaSnp5,304 nestedRepeats,197 refGene,115 refSeqComposite,713 xenoRefGene,75 items chainHg38,494 chainMm10,494 chainNetHg38,497 chainNetMm10,497 est,62 est,135 est,145 est,339 evaSnp,335 evaSnp,371 evaSnp4,335 evaSnp4,371 evaSnp5,335 evaSnp5,371 intronEst,216 intronEst,226 intronEst,420 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netHg38,494 netMm10,494 refGene,142 refSeqComposite,763 refSeqComposite,962 refSeqComposite,1662 xenoMrna,48 xenoMrna,156 xenoMrna,166 xenoMrna,360 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 est,754 est,778 evaSnp,1178 evaSnp4,1223 evaSnp5,1223 genscan,220 intronEst,838 intronEst,862 mrna,471 mrna,495 nestedRepeats,341 refGene,373 refSeqComposite,1760 rmsk,364 transMapEnsemblV5,785 transMapEstV5,754 transMapRefSeqV5,754 transMapRnaV5,754 transMapV5,860 xenoMrna,546 xenoMrna,570 xenoRefGene,332 jan chainHg38,1103 chainMm10,1103 chainNetHg38,1106 chainNetMm10,1106 ensGene,199 est,762 est,787 intronEst,846 intronEst,871 microsat,129 mrna,479 mrna,504 netHg38,1103 netMm10,1103 refGene,391 refGene,424 refSeqComposite,1778 refSeqComposite,1811 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoMrna,554 xenoMrna,579 xenoRefGene,350 xenoRefGene,383 jebb HLTOGAannotvHg38v1,340 jim chainHg38,959 chainHg38,986 chainHg38,1004 chainMm10,959 chainMm10,986 chainMm10,1004 chainNetHg38,962 chainNetHg38,989 chainNetHg38,1007 chainNetMm10,962 chainNetMm10,989 chainNetMm10,1007 netHg38,959 netHg38,986 netHg38,1004 netMm10,959 netMm10,986 netMm10,1004 joel tanDups,472 joined chainHg38,122 chainMm10,122 chainNetHg38,125 chainNetMm10,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netHg38,122 netMm10,122 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1356 refSeqComposite,1360 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 k augustusGene,268 est,748 evaSnp,1132 evaSnp4,1177 evaSnp5,1177 intronEst,832 mrna,465 xenoMrna,540 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karolchik evaSnp,1179 evaSnp4,1224 evaSnp5,1224 karsch-mizrachi est,749 est,773 intronEst,833 intronEst,857 mrna,466 mrna,490 xenoMrna,541 xenoMrna,565 kasif genscan,193 kd refGene,359 refGene,401 refSeqComposite,1746 refSeqComposite,1788 xenoRefGene,318 xenoRefGene,360 kd-tree chainHg38,633 chainMm10,633 chainNetHg38,636 chainNetMm10,636 netHg38,633 netMm10,633 kd-trees chainHg38,651 chainMm10,651 chainNetHg38,654 chainNetMm10,654 netHg38,651 netMm10,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainHg38,960 chainHg38,987 chainHg38,1005 chainHg38,1040 chainHg38,1082 chainMm10,960 chainMm10,987 chainMm10,1005 chainMm10,1040 chainMm10,1082 chainNetHg38,963 chainNetHg38,990 chainNetHg38,1008 chainNetHg38,1043 chainNetHg38,1085 chainNetMm10,963 chainNetMm10,990 chainNetMm10,1008 chainNetMm10,1043 chainNetMm10,1085 est,797 evaSnp,1189 evaSnp4,1234 evaSnp5,1234 intronEst,881 mrna,514 netHg38,960 netHg38,987 netHg38,1005 netHg38,1040 netHg38,1082 netMm10,960 netMm10,987 netMm10,1005 netMm10,1040 netMm10,1082 refGene,340 refSeqComposite,1727 xenoMrna,589 xenoRefGene,300 kept est,720 mrna,436 refGene,316 refSeqComposite,1284 xenoMrna,511 xenoRefGene,276 kirilenko HLTOGAannotvHg38v1,334 km refGene,377 refSeqComposite,1764 xenoRefGene,336 kmer tanDups,304 tanDups,451 kmers tanDups,267 tanDups,274 tanDups,288 known chainHg38,910 chainMm10,910 chainNetHg38,913 chainNetMm10,913 gold,121 netHg38,910 netMm10,910 refGene,21 refSeqComposite,501 xenoRefGene,14 kontopoulos HLTOGAannotvHg38v1,350 koylass evaSnp,1121 evaSnp4,1166 evaSnp5,1166 kr evaSnp,1184 evaSnp4,1229 evaSnp5,1229 kuhn evaSnp,1181 evaSnp4,1226 evaSnp5,1226 kumar evaSnp,1123 evaSnp4,1168 evaSnp5,1168 l HLTOGAannotvHg38v1,353 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 lab HLTOGAannotvHg38v1,323 augustusGene,252 tanDups,481 label genscan,98 refGene,139 refGene,151 refGene,174 refSeqComposite,760 refSeqComposite,772 refSeqComposite,808 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 refGene,144 refSeqComposite,765 uniprot,457 xenoRefGene,104 labeling est,384 intronEst,465 labels nestedRepeats,161 refGene,116 refSeqComposite,714 refSeqComposite,794 xenoRefGene,76 landrum refGene,374 refSeqComposite,1761 xenoRefGene,333 langton transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 largely chainHg38,141 chainMm10,141 chainNetHg38,144 chainNetMm10,144 netHg38,141 netMm10,141 larger intronEst,149 largest chainHg38,389 chainMm10,389 chainNetHg38,392 chainNetMm10,392 netHg38,389 netMm10,389 lastz chainHg38,586 chainHg38,759 chainHg38,908 chainMm10,586 chainMm10,759 chainMm10,908 chainNetHg38,589 chainNetHg38,762 chainNetHg38,911 chainNetMm10,589 chainNetMm10,762 chainNetMm10,911 netHg38,586 netHg38,759 netHg38,908 netMm10,586 netMm10,759 netMm10,908 transMapV5,46 lau transMapEnsemblV5,730 transMapEstV5,699 transMapRefSeqV5,699 transMapRnaV5,699 transMapV5,805 lavtoaxt chainHg38,604 chainMm10,604 chainNetHg38,607 chainNetMm10,607 netHg38,604 netMm10,604 learning HLTOGAannotvHg38v1,89 least est,711 intronEst,66 intronEst,81 intronEst,792 microsat,29 microsat,78 mrna,427 refGene,307 refSeqComposite,1275 tanDups,291 tanDups,363 tanDups,421 xenoMrna,502 xenoRefGene,267 lee uniprot,1955 left refSeqComposite,968 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 est,35 est,659 evaSnp,598 evaSnp4,616 evaSnp5,616 genscan,39 intronEst,47 intronEst,85 intronEst,740 less refGene,271 refSeqComposite,1239 transMapEnsemblV5,372 transMapEstV5,341 transMapRefSeqV5,341 transMapRnaV5,341 transMapV5,447 uniprot,680 xenoRefGene,231 level chainHg38,384 chainHg38,418 chainHg38,423 chainHg38,430 chainHg38,488 chainHg38,515 chainHg38,528 chainHg38,560 chainMm10,384 chainMm10,418 chainMm10,423 chainMm10,430 chainMm10,488 chainMm10,515 chainMm10,528 chainMm10,560 chainNetHg38,387 chainNetHg38,421 chainNetHg38,426 chainNetHg38,433 chainNetHg38,491 chainNetHg38,518 chainNetHg38,531 chainNetHg38,563 chainNetMm10,387 chainNetMm10,421 chainNetMm10,426 chainNetMm10,433 chainNetMm10,491 chainNetMm10,518 chainNetMm10,531 chainNetMm10,563 est,703 intronEst,95 intronEst,784 mrna,419 netHg38,384 netHg38,418 netHg38,423 netHg38,430 netHg38,488 netHg38,515 netHg38,528 netHg38,560 netMm10,384 netMm10,418 netMm10,423 netMm10,430 netMm10,488 netMm10,515 netMm10,528 netMm10,560 refGene,100 refGene,299 refSeqComposite,607 refSeqComposite,627 refSeqComposite,1267 rmsk,205 xenoMrna,494 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 evaSnp,71 evaSnp4,71 evaSnp5,71 libraries est,557 intronEst,638 nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover evaSnp,919 evaSnp4,960 evaSnp5,960 uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refGene,109 refSeqComposite,616 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,69 light-blue uniprot,178 lighter rmsk,237 like chainHg38,47 chainHg38,55 chainMm10,47 chainMm10,55 chainNetHg38,50 chainNetHg38,58 chainNetMm10,50 chainNetMm10,58 ensGene,148 netHg38,47 netHg38,55 netMm10,47 netMm10,55 refSeqComposite,82 refSeqComposite,1610 uniprot,1541 likely HLTOGAannotvHg38v1,160 augustusGene,111 microsat,17 refSeqComposite,944 transMapV5,93 likewise evaSnp,352 evaSnp4,352 evaSnp5,352 line chainHg38,466 chainMm10,466 chainNetHg38,469 chainNetMm10,469 gap,105 gold,124 nestedRepeats,151 netHg38,466 netMm10,466 refSeqComposite,999 refSeqComposite,1010 refSeqComposite,1609 rmsk,165 uniprot,1872 uniprot,1876 line-up chainHg38,533 chainMm10,533 chainNetHg38,536 chainNetMm10,536 netHg38,533 netMm10,533 line-ups chainHg38,518 chainMm10,518 chainNetHg38,521 chainNetMm10,521 netHg38,518 netMm10,518 lineage transMapEnsemblV5,807 transMapEstV5,776 transMapRefSeqV5,776 transMapRnaV5,776 transMapV5,882 lineage-specific chainHg38,934 chainMm10,934 chainNetHg38,937 chainNetMm10,937 netHg38,934 netMm10,934 linear chainHg38,693 chainMm10,693 chainNetHg38,696 chainNetMm10,696 netHg38,693 netMm10,693 lineargap chainHg38,699 chainMm10,699 chainNetHg38,702 chainNetMm10,702 netHg38,699 netMm10,699 lines chainHg38,129 chainHg38,136 chainHg38,158 chainHg38,446 chainMm10,129 chainMm10,136 chainMm10,158 chainMm10,446 chainNetHg38,132 chainNetHg38,139 chainNetHg38,161 chainNetHg38,449 chainNetMm10,132 chainNetMm10,139 chainNetMm10,161 chainNetMm10,449 nestedRepeats,131 netHg38,129 netHg38,136 netHg38,158 netHg38,446 netMm10,129 netMm10,136 netMm10,158 netMm10,446 refSeqComposite,994 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1527 refSeqComposite,1642 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman est,751 est,775 intronEst,835 intronEst,859 mrna,468 mrna,492 xenoMrna,543 xenoMrna,567 lipoification uniprot,577 list est,209 evaSnp,351 evaSnp,974 evaSnp4,351 evaSnp4,1015 evaSnp5,351 evaSnp5,1015 intronEst,290 mrna,155 refSeqComposite,759 refSeqComposite,1686 uniprot,979 uniprot,1165 uniprot,1831 xenoMrna,230 listed ensGene,49 literature refSeqComposite,282 refSeqComposite,655 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainHg38,109 chainHg38,180 chainMm10,109 chainMm10,180 chainNetHg38,112 chainNetHg38,183 chainNetMm10,112 chainNetMm10,183 ensGene,73 nestedRepeats,98 netHg38,109 netHg38,180 netMm10,109 netMm10,180 refSeqComposite,1332 localized gap,135 located simpleRepeat,21 location chainHg38,248 chainMm10,248 chainNetHg38,251 chainNetMm10,251 netHg38,248 netMm10,248 transMapEnsemblV5,401 transMapEnsemblV5,411 transMapEnsemblV5,478 transMapEstV5,370 transMapEstV5,380 transMapEstV5,447 transMapRefSeqV5,370 transMapRefSeqV5,380 transMapRefSeqV5,447 transMapRnaV5,370 transMapRnaV5,380 transMapRnaV5,447 transMapV5,476 transMapV5,486 transMapV5,553 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,490 transMapEstV5,459 transMapRefSeqV5,459 transMapRnaV5,459 transMapV5,565 uniprot,451 locus HLTOGAannotvHg38v1,123 logic est,287 intronEst,368 mrna,233 xenoMrna,308 long est,674 intronEst,755 refSeqComposite,1023 rmsk,161 rmsk,166 long-established transMapEnsemblV5,802 transMapEstV5,771 transMapRefSeqV5,771 transMapRnaV5,771 transMapV5,877 longer chainHg38,81 chainMm10,81 chainNetHg38,84 chainNetMm10,84 evaSnp,51 evaSnp4,51 evaSnp5,51 netHg38,81 netMm10,81 tanDups,336 longest chainHg38,511 chainMm10,511 chainNetHg38,514 chainNetMm10,514 netHg38,511 netMm10,511 look chainHg38,46 chainMm10,46 chainNetHg38,49 chainNetMm10,49 netHg38,46 netMm10,46 loss HLTOGAannotvHg38v1,236 losses transMapEnsemblV5,800 transMapEstV5,769 transMapRefSeqV5,769 transMapRnaV5,769 transMapV5,875 lost HLTOGAannotvHg38v1,40 HLTOGAannotvHg38v1,260 HLTOGAannotvHg38v1,272 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 lower chainHg38,487 chainMm10,487 chainNetHg38,490 chainNetMm10,490 netHg38,487 netMm10,487 lower-level chainHg38,850 chainHg38,856 chainMm10,850 chainMm10,856 chainNetHg38,853 chainNetHg38,859 chainNetMm10,853 chainNetMm10,859 netHg38,850 netHg38,856 netMm10,850 netMm10,856 ls-snp uniprot,1536 lt HLTOGAannotvHg38v1,213 refSeqComposite,940 ltr rmsk,170 m HLTOGAannotvHg38v1,345 augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 est,746 intronEst,830 mrna,463 transMapEnsemblV5,714 transMapEnsemblV5,721 transMapEnsemblV5,755 transMapEnsemblV5,757 transMapEnsemblV5,789 transMapEstV5,683 transMapEstV5,690 transMapEstV5,724 transMapEstV5,726 transMapEstV5,758 transMapRefSeqV5,683 transMapRefSeqV5,690 transMapRefSeqV5,724 transMapRefSeqV5,726 transMapRefSeqV5,758 transMapRnaV5,683 transMapRnaV5,690 transMapRnaV5,724 transMapRnaV5,726 transMapRnaV5,758 transMapV5,789 transMapV5,796 transMapV5,830 transMapV5,832 transMapV5,864 xenoMrna,538 machine HLTOGAannotvHg38v1,88 made rmsk,110 transMapEnsemblV5,393 transMapEstV5,362 transMapRefSeqV5,362 transMapRnaV5,362 transMapV5,468 uniprot,931 uniprot,938 maglott refGene,404 refSeqComposite,1791 xenoRefGene,363 mailing evaSnp,973 evaSnp4,1014 evaSnp5,1014 refSeqComposite,1685 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make est,446 est,512 gold,75 intronEst,527 intronEst,593 refGene,56 refSeqComposite,115 refSeqComposite,1095 rmsk,123 transMapEnsemblV5,427 transMapEstV5,396 transMapRefSeqV5,396 transMapRnaV5,396 transMapV5,502 uniprot,1406 makedb rmsk,131 makedoc evaSnp,909 evaSnp4,950 evaSnp5,950 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refGene,384 refSeqComposite,1771 rmsk,391 rmsk,405 xenoRefGene,343 mammals HLTOGAannotvHg38v1,56 manner refSeqComposite,1622 uniprot,1469 manual refSeqComposite,257 uniprot,1652 manually refSeqComposite,249 refSeqComposite,420 many chainHg38,397 chainMm10,397 chainNetHg38,400 chainNetMm10,400 est,144 intronEst,110 intronEst,225 mrna,90 netHg38,397 netMm10,397 tanDups,448 uniprot,932 uniprot,1124 xenoMrna,165 map chainHg38,325 chainMm10,325 chainNetHg38,328 chainNetMm10,328 netHg38,325 netMm10,325 transMapEnsemblV5,292 transMapEstV5,261 transMapRefSeqV5,261 transMapRnaV5,261 transMapV5,367 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1104 transMapEnsemblV5,378 transMapEnsemblV5,410 transMapEnsemblV5,468 transMapEnsemblV5,766 transMapEstV5,347 transMapEstV5,379 transMapEstV5,437 transMapEstV5,735 transMapRefSeqV5,347 transMapRefSeqV5,379 transMapRefSeqV5,437 transMapRefSeqV5,735 transMapRnaV5,347 transMapRnaV5,379 transMapRnaV5,437 transMapRnaV5,735 transMapV5,130 transMapV5,453 transMapV5,485 transMapV5,543 transMapV5,841 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 evaSnp4,734 evaSnp5,734 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,319 tanDups,6 tandemDups,12 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,298 transMapEstV5,234 transMapEstV5,254 transMapEstV5,267 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,267 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,267 transMapV5,340 transMapV5,360 transMapV5,373 ucscToINSDC,10 ucscToRefSeq,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings evaSnp,21 evaSnp4,21 evaSnp4,405 evaSnp5,21 evaSnp5,405 transMapEnsemblV5,7 transMapEnsemblV5,500 transMapEstV5,5 transMapEstV5,469 transMapRefSeqV5,6 transMapRefSeqV5,469 transMapRnaV5,6 transMapRnaV5,469 transMapV5,575 uniprot,1362 maps transMapEnsemblV5,474 transMapEnsemblV5,487 transMapEstV5,443 transMapEstV5,456 transMapRefSeqV5,443 transMapRefSeqV5,456 transMapRnaV5,443 transMapRnaV5,456 transMapV5,71 transMapV5,549 transMapV5,562 mar augustusGene,309 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 mario augustusGene,102 augustusGene,283 mark est,533 evaSnp,106 evaSnp4,106 evaSnp5,106 intronEst,614 transMapEnsemblV5,679 transMapEstV5,648 transMapRefSeqV5,648 transMapRnaV5,648 transMapV5,754 uniprot,1539 uniprot,1956 marked refSeqComposite,521 markers microsat,23 markov augustusGene,325 marks evaSnp,67 evaSnp4,67 evaSnp5,67 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainHg38,253 chainHg38,512 chainHg38,550 chainMm10,253 chainMm10,512 chainMm10,550 chainNetHg38,256 chainNetHg38,515 chainNetHg38,553 chainNetMm10,256 chainNetMm10,515 chainNetMm10,553 est,81 est,297 est,312 est,353 est,371 evaSnp,847 evaSnp4,868 evaSnp4,934 evaSnp5,868 evaSnp5,934 intronEst,162 intronEst,378 intronEst,393 intronEst,434 intronEst,452 mrna,243 mrna,258 mrna,299 mrna,317 netHg38,253 netHg38,512 netHg38,550 netMm10,253 netMm10,512 netMm10,550 refSeqComposite,908 refSeqComposite,922 tanDups,221 uniprot,1305 uniprot,1341 xenoMrna,83 xenoMrna,318 xenoMrna,333 xenoMrna,374 xenoMrna,392 matches est,69 mrna,50 xenoMrna,55 matching chainHg38,256 chainMm10,256 chainNetHg38,259 chainNetMm10,259 est,87 intronEst,168 netHg38,256 netMm10,256 tanDups,229 uniprot,1068 uniprot,1075 xenoMrna,98 matrix chainHg38,663 chainHg38,695 chainMm10,663 chainMm10,695 chainNetHg38,666 chainNetHg38,698 chainNetMm10,666 chainNetMm10,698 netHg38,663 netHg38,695 netMm10,663 netMm10,695 mature est,503 intronEst,584 unipChain,3 uniprot,251 uniprot,292 maximally chainHg38,655 chainMm10,655 chainNetHg38,658 chainNetMm10,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netHg38,655 netMm10,655 maximilian uniprot,1944 maximum est,657 intronEst,738 maxtracks augustusGene,139 may HLTOGAannotvHg38v1,189 HLTOGAannotvHg38v1,263 HLTOGAannotvHg38v1,265 chainHg38,171 chainHg38,426 chainMm10,171 chainMm10,426 chainNetHg38,174 chainNetHg38,429 chainNetMm10,174 chainNetMm10,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 est,140 est,259 est,269 est,377 est,428 est,508 est,510 est,522 est,524 est,544 est,668 evaSnp,336 evaSnp,356 evaSnp,372 evaSnp,871 evaSnp,962 evaSnp,1200 evaSnp4,336 evaSnp4,356 evaSnp4,372 evaSnp4,892 evaSnp4,1003 evaSnp4,1245 evaSnp5,336 evaSnp5,356 evaSnp5,372 evaSnp5,892 evaSnp5,1003 evaSnp5,1245 gc5BaseBw,40 intronEst,221 intronEst,340 intronEst,350 intronEst,458 intronEst,509 intronEst,589 intronEst,591 intronEst,603 intronEst,605 intronEst,625 intronEst,749 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netHg38,171 netHg38,426 netMm10,171 netMm10,426 refSeqComposite,59 refSeqComposite,659 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,107 transMapEnsemblV5,142 transMapEstV5,76 transMapEstV5,111 transMapRefSeqV5,76 transMapRefSeqV5,111 transMapRnaV5,76 transMapRnaV5,111 transMapV5,182 transMapV5,217 uniprot,2046 xenoMrna,161 xenoMrna,280 xenoMrna,290 xenoMrna,398 xenoMrna,442 maybe evaSnp,522 evaSnp,572 evaSnp4,540 evaSnp4,590 evaSnp5,540 evaSnp5,590 mcgarvey refGene,376 refSeqComposite,1763 xenoRefGene,335 md5 uniprot,1601 mdash est,482 est,486 evaSnp,468 evaSnp,482 evaSnp,532 evaSnp,582 evaSnp,615 evaSnp,636 evaSnp4,486 evaSnp4,500 evaSnp4,550 evaSnp4,600 evaSnp4,633 evaSnp4,654 evaSnp5,486 evaSnp5,500 evaSnp5,550 evaSnp5,600 evaSnp5,633 evaSnp5,654 intronEst,563 intronEst,567 meant evaSnp,640 evaSnp4,658 evaSnp5,658 mediating uniprot,314 medium chainHg38,700 chainMm10,700 chainNetHg38,703 chainNetMm10,703 netHg38,700 netMm10,700 refGene,111 refSeqComposite,618 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refGene,212 refSeqComposite,846 xenoRefGene,172 method HLTOGAannotvHg38v1,27 ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods HLTOGAannotvHg38v1,41 augustusGene,46 chainHg38,562 chainHg38,763 chainMm10,562 chainMm10,763 chainNetHg38,565 chainNetHg38,766 chainNetMm10,565 chainNetMm10,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 est,444 evaSnp,425 evaSnp,659 evaSnp4,443 evaSnp4,677 evaSnp5,443 evaSnp5,677 genscan,130 genscan,197 intronEst,525 microsat,45 mrna,383 nestedRepeats,244 netHg38,562 netHg38,763 netMm10,562 netMm10,763 refGene,255 refSeqComposite,90 refSeqComposite,1136 refSeqComposite,1218 rmsk,286 simpleRepeat,55 tanDups,178 transMapEnsemblV5,151 transMapEstV5,120 transMapRefSeqV5,120 transMapRnaV5,120 transMapV5,226 uniprot,777 windowmaskerSdust,46 xenoMrna,458 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael HLTOGAannotvHg38v1,321 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 middle HLTOGAannotvHg38v1,144 HLTOGAannotvHg38v1,178 HLTOGAannotvHg38v1,225 HLTOGAannotvHg38v1,244 might est,105 est,677 intronEst,186 intronEst,758 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainHg38,928 chainHg38,965 chainHg38,1026 chainHg38,1046 chainHg38,1094 chainMm10,928 chainMm10,965 chainMm10,1026 chainMm10,1046 chainMm10,1094 chainNetHg38,931 chainNetHg38,968 chainNetHg38,1029 chainNetHg38,1049 chainNetHg38,1097 chainNetMm10,931 chainNetMm10,968 chainNetMm10,1029 chainNetMm10,1049 chainNetMm10,1097 netHg38,928 netHg38,965 netHg38,1026 netHg38,1046 netHg38,1094 netMm10,928 netMm10,965 netMm10,1026 netMm10,1046 netMm10,1094 minexonintronprob augustusGene,135 minidentity tanDups,208 minimum chainHg38,676 chainMm10,676 chainNetHg38,679 chainNetMm10,679 netHg38,676 netMm10,676 minmeanexonintronprob augustusGene,137 minmei chainHg38,920 chainMm10,920 chainNetHg38,923 chainNetMm10,923 netHg38,920 netMm10,920 mis-matches tanDups,223 mismatch refSeqComposite,892 rmsk,218 mismatching refSeqComposite,896 misplacements uniprot,853 missense evaSnp,814 evaSnp,833 evaSnp4,835 evaSnp4,854 evaSnp5,835 evaSnp5,854 missense_variant evaSnp,748 evaSnp4,769 evaSnp5,769 missing HLTOGAannotvHg38v1,205 HLTOGAannotvHg38v1,212 mitochondrial evaSnp4,927 evaSnp5,927 mitochondrion refSeqComposite,240 mj refGene,375 refSeqComposite,1762 xenoRefGene,334 mk_counts windowmaskerSdust,59 ml evaSnp,1174 evaSnp4,1219 evaSnp5,1219 mm10 chainMm10,7 chainMm10,69 chainMm10,303 chainNetMm10,8 chainNetMm10,72 chainNetMm10,306 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,303 mm39 evaSnp,394 evaSnp,718 mode chainHg38,381 chainMm10,381 chainNetHg38,384 chainNetMm10,384 est,60 est,125 evaSnp,174 evaSnp4,174 evaSnp5,174 gold,68 intronEst,144 intronEst,206 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netHg38,381 netMm10,381 rmsk,142 xenoMrna,46 xenoMrna,146 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 evaSnp,388 evaSnp,709 evaSnp,723 evaSnp,1113 evaSnp4,388 evaSnp4,413 evaSnp4,722 evaSnp4,742 evaSnp4,1158 evaSnp5,388 evaSnp5,413 evaSnp5,722 evaSnp5,742 evaSnp5,1158 genscan,158 uniprot,733 modes chainHg38,238 chainMm10,238 chainNetHg38,241 chainNetMm10,241 netHg38,238 netMm10,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 morales HLTOGAannotvHg38v1,346 more augustusGene,35 chainHg38,160 chainHg38,220 chainMm10,160 chainMm10,220 chainNetHg38,163 chainNetHg38,223 chainNetMm10,163 chainNetMm10,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 est,65 est,172 est,279 est,409 est,433 evaSnp,136 evaSnp,151 evaSnp,163 evaSnp,485 evaSnp,535 evaSnp,603 evaSnp,616 evaSnp,926 evaSnp,984 evaSnp4,136 evaSnp4,151 evaSnp4,163 evaSnp4,503 evaSnp4,553 evaSnp4,621 evaSnp4,634 evaSnp4,967 evaSnp4,1025 evaSnp5,136 evaSnp5,151 evaSnp5,163 evaSnp5,503 evaSnp5,553 evaSnp5,621 evaSnp5,634 evaSnp5,967 evaSnp5,1025 genscan,50 genscan,125 genscan,163 intronEst,253 intronEst,360 intronEst,490 intronEst,514 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netHg38,160 netHg38,220 netMm10,160 netMm10,220 refGene,70 refGene,214 refSeqComposite,93 refSeqComposite,129 refSeqComposite,848 refSeqComposite,1378 refSeqComposite,1458 rmsk,323 simpleRepeat,57 tanDups,353 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,222 transMapEnsemblV5,267 transMapEnsemblV5,289 transMapEnsemblV5,565 transMapEstV5,99 transMapEstV5,116 transMapEstV5,191 transMapEstV5,236 transMapEstV5,258 transMapEstV5,534 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,191 transMapRefSeqV5,236 transMapRefSeqV5,258 transMapRefSeqV5,534 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,191 transMapRnaV5,236 transMapRnaV5,258 transMapRnaV5,534 transMapV5,62 transMapV5,106 transMapV5,163 transMapV5,205 transMapV5,222 transMapV5,297 transMapV5,342 transMapV5,364 transMapV5,640 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoMrna,51 xenoMrna,193 xenoMrna,300 xenoMrna,421 xenoMrna,447 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 est,481 evaSnp,69 evaSnp,406 evaSnp4,69 evaSnp4,424 evaSnp5,69 evaSnp5,424 intronEst,562 nestedRepeats,249 refSeqComposite,576 refSeqComposite,943 transMapV5,92 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainHg38,1059 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,96 chainMm10,148 chainMm10,266 chainMm10,291 chainMm10,572 chainMm10,620 chainMm10,1059 chainNetHg38,1062 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,99 chainNetMm10,151 chainNetMm10,269 chainNetMm10,294 chainNetMm10,575 chainNetMm10,623 chainNetMm10,1062 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netHg38,1059 netMm10,1 netMm10,3 netMm10,65 netMm10,96 netMm10,148 netMm10,266 netMm10,291 netMm10,572 netMm10,620 netMm10,1059 tanDups,70 transMapEnsemblV5,44 transMapEnsemblV5,364 transMapEstV5,333 transMapRefSeqV5,333 transMapRnaV5,333 transMapV5,439 uniprot,521 uniprot,535 mouse-over evaSnp,300 evaSnp,347 evaSnp4,300 evaSnp4,347 evaSnp5,300 evaSnp5,347 mousing evaSnp,301 evaSnp4,301 evaSnp5,301 mrna est,7 est,504 est,520 est,603 evaSnp,841 evaSnp,884 evaSnp4,862 evaSnp4,906 evaSnp5,862 evaSnp5,906 intronEst,9 intronEst,585 intronEst,601 intronEst,684 mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 transMapEnsemblV5,455 transMapEstV5,424 transMapRefSeqV5,424 transMapRnaV5,18 transMapRnaV5,424 transMapV5,99 transMapV5,530 xenoMrna,7 xenoMrna,21 xenoMrna,201 xenoMrna,473 xenoMrna,514 xenoMrna,521 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 transMapEnsemblV5,172 transMapEstV5,141 transMapRefSeqV5,141 transMapRnaV5,141 transMapV5,110 transMapV5,247 xenoMrna,2 xenoMrna,4 xenoMrna,211 xenoMrna,316 xenoMrna,331 xenoMrna,372 xenoMrna,390 xenoMrna,415 xenoMrna,460 much chainHg38,877 chainHg38,894 chainMm10,877 chainMm10,894 chainNetHg38,880 chainNetHg38,897 chainNetMm10,880 chainNetMm10,897 nestedRepeats,210 netHg38,877 netHg38,894 netMm10,877 netMm10,894 mujica uniprot,1967 multiple chainHg38,192 chainMm10,192 chainNetHg38,195 chainNetMm10,195 est,257 est,686 evaSnp,124 evaSnp,338 evaSnp,353 evaSnp,370 evaSnp,380 evaSnp4,124 evaSnp4,338 evaSnp4,353 evaSnp4,370 evaSnp4,380 evaSnp5,124 evaSnp5,338 evaSnp5,353 evaSnp5,370 evaSnp5,380 intronEst,338 intronEst,767 mrna,203 mrna,402 netHg38,192 netMm10,192 refGene,282 refSeqComposite,1250 refSeqComposite,1297 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 uniprot,58 uniprot,1067 uniprot,1095 xenoMrna,278 xenoMrna,476 xenoRefGene,242 multiplenucleotidevariant evaSnp,614 evaSnp4,632 evaSnp5,632 munegowda HLTOGAannotvHg38v1,336 must intronEst,61 intronEst,78 refSeqComposite,302 refSeqComposite,1631 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation HLTOGAannotvHg38v1,157 HLTOGAannotvHg38v1,186 HLTOGAannotvHg38v1,233 HLTOGAannotvHg38v1,241 chainHg38,181 chainMm10,181 chainNetHg38,184 chainNetMm10,184 netHg38,181 netMm10,181 refSeqComposite,559 mutation-related uniprot,408 mutations HLTOGAannotvHg38v1,276 HLTOGAannotvHg38v1,306 unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 refSeqComposite,1323 refSeqComposite,1626 refSeqComposite,1640 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 evaSnp,1124 evaSnp4,1169 evaSnp5,1169 refSeqComposite,914 refSeqComposite,955 refSeqComposite,982 refSeqComposite,1041 refSeqComposite,1068 refSeqComposite,1083 tanDups,117 tanDups,122 tanDups,282 name chainHg38,363 chainMm10,363 chainNetHg38,366 chainNetMm10,366 est,198 intronEst,279 mrna,144 nestedRepeats,136 netHg38,363 netMm10,363 refGene,147 refGene,157 refGene,162 refSeqComposite,755 refSeqComposite,768 refSeqComposite,778 refSeqComposite,786 refSeqComposite,798 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoMrna,219 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainHg38,242 chainMm10,242 chainNetHg38,245 chainNetMm10,245 evaSnp,680 evaSnp4,698 evaSnp5,698 netHg38,242 netMm10,242 refGene,169 refSeqComposite,803 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,129 nar evaSnp,1159 evaSnp4,1204 evaSnp5,1204 native augustusGene,295 transMapEnsemblV5,763 transMapEstV5,732 transMapRefSeqV5,732 transMapRnaV5,732 transMapV5,122 transMapV5,838 natl chainHg38,1064 chainMm10,1064 chainNetHg38,1067 chainNetMm10,1067 netHg38,1064 netMm10,1064 natural chainHg38,815 chainMm10,815 chainNetHg38,818 chainNetMm10,818 netHg38,815 netMm10,815 naturally tanDups,75 navigation evaSnp,179 evaSnp4,179 evaSnp5,179 nbci uniprot,822 nbsp HLTOGAannotvHg38v1,142 HLTOGAannotvHg38v1,164 HLTOGAannotvHg38v1,211 HLTOGAannotvHg38v1,234 HLTOGAannotvHg38v1,271 chainHg38,666 chainMm10,666 chainNetHg38,669 chainNetMm10,669 netHg38,666 netMm10,666 nc_001700.1 gold,163 ncbi evaSnp,49 evaSnp,1109 evaSnp4,49 evaSnp4,392 evaSnp4,719 evaSnp4,1150 evaSnp5,49 evaSnp5,392 evaSnp5,719 evaSnp5,1150 gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqGenomicDiff,5 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refGene,30 refGene,336 refGene,406 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,27 refSeqComposite,72 refSeqComposite,79 refSeqComposite,104 refSeqComposite,317 refSeqComposite,373 refSeqComposite,542 refSeqComposite,638 refSeqComposite,645 refSeqComposite,689 refSeqComposite,1156 refSeqComposite,1187 refSeqComposite,1203 refSeqComposite,1723 refSeqComposite,1793 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 ncbirefseq refSeqComposite,1406 refSeqComposite,1550 refSeqComposite,1694 ncbirefseqcurated evaSnp,391 evaSnp,707 refSeqComposite,1409 ncbirefseqdiffs.bb refSeqComposite,1489 ncbirefseqother.bb refSeqComposite,1487 refSeqComposite,1551 ncbirefseqpredicted refSeqComposite,1412 refSeqComposite,1614 ncbirefseqpredicted.gtf refSeqComposite,1615 ncbirefseqpsl refSeqComposite,1420 ncbirefseqselect evaSnp,397 evaSnp,722 ndash refSeqComposite,199 refSeqComposite,210 refSeqComposite,340 refSeqComposite,379 refSeqComposite,434 refSeqComposite,457 refSeqComposite,479 refSeqComposite,515 refSeqComposite,548 refSeqComposite,893 refSeqComposite,927 refSeqComposite,960 refSeqComposite,1018 refSeqComposite,1044 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 evaSnp,78 evaSnp4,78 evaSnp5,78 refSeqComposite,1643 near-best transMapEnsemblV5,355 transMapEstV5,324 transMapRefSeqV5,324 transMapRnaV5,324 transMapV5,430 necessary chainHg38,799 chainMm10,799 chainNetHg38,802 chainNetMm10,802 netHg38,799 netMm10,799 neither evaSnp4,409 evaSnp4,738 evaSnp5,409 evaSnp5,738 nematodes augustusGene,211 net chainHg38,34 chainHg38,258 chainHg38,261 chainHg38,376 chainHg38,753 chainMm10,34 chainMm10,258 chainMm10,261 chainMm10,376 chainMm10,753 chainNetHg38,3 chainNetHg38,11 chainNetHg38,37 chainNetHg38,261 chainNetHg38,264 chainNetHg38,379 chainNetHg38,756 chainNetHg38Viewchain,9 chainNetHg38Viewnet,1 chainNetHg38Viewnet,9 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,261 chainNetMm10,264 chainNetMm10,379 chainNetMm10,756 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netHg38,2 netHg38,9 netHg38,34 netHg38,258 netHg38,261 netHg38,376 netHg38,753 netMm10,2 netMm10,9 netMm10,34 netMm10,258 netMm10,261 netMm10,376 netMm10,753 transMapV5,139 netclass chainHg38,869 chainHg38,992 chainMm10,869 chainMm10,992 chainNetHg38,872 chainNetHg38,995 chainNetMm10,872 chainNetMm10,995 netHg38,869 netHg38,992 netMm10,869 netMm10,992 netfilter transMapEnsemblV5,252 transMapEstV5,221 transMapRefSeqV5,221 transMapRnaV5,221 transMapV5,327 nets chainHg38,979 chainMm10,979 chainNetHg38,982 chainNetMm10,982 netHg38,979 netMm10,979 transMapEnsemblV5,199 transMapEnsemblV5,241 transMapEnsemblV5,247 transMapEnsemblV5,261 transMapEstV5,168 transMapEstV5,210 transMapEstV5,216 transMapEstV5,230 transMapRefSeqV5,168 transMapRefSeqV5,210 transMapRefSeqV5,216 transMapRefSeqV5,230 transMapRnaV5,168 transMapRnaV5,210 transMapRnaV5,216 transMapRnaV5,230 transMapV5,88 transMapV5,274 transMapV5,316 transMapV5,322 transMapV5,336 netsyntenic chainHg38,837 chainHg38,990 chainMm10,837 chainMm10,990 chainNetHg38,840 chainNetHg38,993 chainNetMm10,840 chainNetMm10,993 netHg38,837 netHg38,990 netMm10,837 netMm10,990 new augustusGene,329 newer est,555 intronEst,636 nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainHg38,342 chainHg38,371 chainMm10,342 chainMm10,371 chainNetHg38,345 chainNetHg38,374 chainNetMm10,345 chainNetMm10,374 netHg38,342 netHg38,371 netMm10,342 netMm10,371 refSeqComposite,166 refSeqComposite,751 nig augustusGene,270 nm refSeqComposite,224 refSeqComposite,489 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 refGene,8 nm_012309 refSeqComposite,1135 nm_012309.4 refSeqComposite,1133 nmd_transcript_variant evaSnp,780 evaSnp4,801 evaSnp5,801 no HLTOGAannotvHg38v1,155 HLTOGAannotvHg38v1,184 HLTOGAannotvHg38v1,231 est,92 evaSnp,50 evaSnp,805 evaSnp4,50 evaSnp4,826 evaSnp5,50 evaSnp5,826 intronEst,173 microsat,73 tanDups,222 tanDups,281 transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 no_sequence_alteration evaSnp,781 evaSnp4,802 evaSnp5,802 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainHg38,49 chainMm10,49 chainNetHg38,52 chainNetMm10,52 netHg38,49 netMm10,49 non-cat xenoMrna,3 xenoRefGene,3 non-coding augustusGene,75 evaSnp,440 evaSnp,761 evaSnp4,458 evaSnp4,782 evaSnp5,458 evaSnp5,782 refGene,231 refSeqComposite,1084 xenoRefGene,191 non-human evaSnp,53 evaSnp4,53 evaSnp5,53 non-mrna est,624 intronEst,705 non-protein-coding refGene,25 refGene,239 refSeqComposite,22 xenoRefGene,17 xenoRefGene,199 non-redundant refGene,412 refSeqComposite,1799 xenoRefGene,371 non_coding_transcript_exon_variant evaSnp,771 evaSnp4,792 evaSnp5,792 nonsense evaSnp,815 evaSnp4,836 evaSnp5,836 nonsyn chainHg38,548 chainMm10,548 chainNetHg38,551 chainNetMm10,551 netHg38,548 netMm10,548 nor xenoMrna,124 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not HLTOGAannotvHg38v1,252 HLTOGAannotvHg38v1,266 chainHg38,804 chainMm10,804 chainNetHg38,807 chainNetMm10,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 est,349 est,484 est,511 est,525 evaSnp,655 evaSnp,845 evaSnp,915 evaSnp4,398 evaSnp4,673 evaSnp4,866 evaSnp4,956 evaSnp5,398 evaSnp5,673 evaSnp5,866 evaSnp5,956 intronEst,430 intronEst,565 intronEst,592 intronEst,606 mrna,295 ncbiRefSeqOther,7 netHg38,804 netMm10,804 refSeqComposite,176 refSeqComposite,390 refSeqComposite,428 refSeqComposite,471 refSeqComposite,671 refSeqComposite,696 refSeqComposite,1056 refSeqComposite,1134 rmsk,113 rmsk,313 tanDups,401 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 xenoMrna,120 xenoMrna,370 note est,654 evaSnp,912 evaSnp4,953 evaSnp5,953 intronEst,735 nestedRepeats,264 refSeqComposite,175 refSeqComposite,1616 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 uniprot,695 noticed tanDups,67 nov gap,15 gold,17 novel HLTOGAannotvHg38v1,75 transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 novo augustusGene,304 transMapEnsemblV5,772 transMapEstV5,741 transMapRefSeqV5,741 transMapRnaV5,741 transMapV5,847 now tanDups,334 uniprot,1680 np refSeqComposite,226 refSeqComposite,229 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,225 refSeqComposite,491 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 refGene,10 ns chainHg38,884 chainMm10,884 chainNetHg38,887 chainNetMm10,887 netHg38,884 netMm10,884 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 est,758 est,783 evaSnp,1150 evaSnp4,1195 evaSnp5,1195 intronEst,842 intronEst,867 microsat,125 mrna,475 mrna,500 refGene,387 refGene,420 refSeqComposite,1774 refSeqComposite,1807 simpleRepeat,85 uniprot,1997 xenoMrna,550 xenoMrna,575 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 evaSnp,24 evaSnp,112 evaSnp,125 evaSnp,471 evaSnp,499 evaSnp,549 evaSnp,608 evaSnp,619 evaSnp,866 evaSnp4,24 evaSnp4,112 evaSnp4,125 evaSnp4,489 evaSnp4,517 evaSnp4,567 evaSnp4,626 evaSnp4,637 evaSnp4,887 evaSnp5,24 evaSnp5,112 evaSnp5,125 evaSnp5,489 evaSnp5,517 evaSnp5,567 evaSnp5,626 evaSnp5,637 evaSnp5,887 ucscToINSDC,6 ucscToINSDC,28 nucleotides evaSnp,110 evaSnp,486 evaSnp,536 evaSnp,628 evaSnp4,110 evaSnp4,504 evaSnp4,554 evaSnp4,646 evaSnp5,110 evaSnp5,504 evaSnp5,554 evaSnp5,646 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 evaSnp,625 evaSnp4,643 evaSnp5,643 intronEst,150 rmsk,233 tanDups,60 tanDups,430 transMapEnsemblV5,424 transMapEnsemblV5,547 transMapEstV5,393 transMapEstV5,516 transMapRefSeqV5,393 transMapRefSeqV5,516 transMapRnaV5,393 transMapRnaV5,516 transMapV5,499 transMapV5,622 o gold,158 refGene,369 refSeqComposite,1756 xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain evaSnp,1064 evaSnp4,1105 evaSnp5,1105 transMapEnsemblV5,649 transMapEstV5,618 transMapRefSeqV5,618 transMapRnaV5,618 transMapV5,724 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 evaSnp,1024 evaSnp4,1065 evaSnp5,1065 refSeqComposite,1481 refSeqComposite,1501 transMapEnsemblV5,156 transMapEnsemblV5,609 transMapEstV5,125 transMapEstV5,578 transMapRefSeqV5,125 transMapRefSeqV5,578 transMapRnaV5,125 transMapRnaV5,578 transMapV5,231 transMapV5,684 uniprot,1506 uniprot,1695 occasional refSeqComposite,62 occur simpleRepeat,36 oct augustusGene,334 evaSnp,1154 evaSnp4,1199 evaSnp5,1199 of HLTOGAannotvHg38v1,49 HLTOGAannotvHg38v1,81 HLTOGAannotvHg38v1,112 HLTOGAannotvHg38v1,115 HLTOGAannotvHg38v1,146 HLTOGAannotvHg38v1,168 HLTOGAannotvHg38v1,180 HLTOGAannotvHg38v1,201 HLTOGAannotvHg38v1,215 HLTOGAannotvHg38v1,227 HLTOGAannotvHg38v1,246 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainHg38,17 chainHg38,64 chainHg38,179 chainHg38,199 chainHg38,251 chainHg38,272 chainHg38,354 chainHg38,364 chainHg38,482 chainHg38,502 chainHg38,635 chainHg38,640 chainHg38,658 chainHg38,678 chainHg38,878 chainHg38,953 chainHg38,975 chainHg38,999 chainHg38,1013 chainMm10,17 chainMm10,64 chainMm10,179 chainMm10,199 chainMm10,251 chainMm10,272 chainMm10,354 chainMm10,364 chainMm10,482 chainMm10,502 chainMm10,635 chainMm10,640 chainMm10,658 chainMm10,678 chainMm10,878 chainMm10,953 chainMm10,975 chainMm10,999 chainMm10,1013 chainNetHg38,20 chainNetHg38,67 chainNetHg38,182 chainNetHg38,202 chainNetHg38,254 chainNetHg38,275 chainNetHg38,357 chainNetHg38,367 chainNetHg38,485 chainNetHg38,505 chainNetHg38,638 chainNetHg38,643 chainNetHg38,661 chainNetHg38,681 chainNetHg38,881 chainNetHg38,956 chainNetHg38,978 chainNetHg38,1002 chainNetHg38,1016 chainNetMm10,20 chainNetMm10,67 chainNetMm10,182 chainNetMm10,202 chainNetMm10,254 chainNetMm10,275 chainNetMm10,357 chainNetMm10,367 chainNetMm10,485 chainNetMm10,505 chainNetMm10,638 chainNetMm10,643 chainNetMm10,661 chainNetMm10,681 chainNetMm10,881 chainNetMm10,956 chainNetMm10,978 chainNetMm10,1002 chainNetMm10,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 est,40 est,70 est,79 est,97 est,99 est,134 est,173 est,199 est,210 est,246 est,315 est,425 est,502 est,518 est,536 est,553 est,615 est,623 est,627 est,706 evaSnp,22 evaSnp,84 evaSnp,92 evaSnp,119 evaSnp,234 evaSnp,243 evaSnp,275 evaSnp,461 evaSnp,519 evaSnp,569 evaSnp,590 evaSnp,596 evaSnp,607 evaSnp,626 evaSnp,840 evaSnp,882 evaSnp,898 evaSnp,901 evaSnp,1144 evaSnp,1163 evaSnp4,22 evaSnp4,84 evaSnp4,92 evaSnp4,119 evaSnp4,234 evaSnp4,243 evaSnp4,275 evaSnp4,406 evaSnp4,410 evaSnp4,479 evaSnp4,537 evaSnp4,587 evaSnp4,608 evaSnp4,614 evaSnp4,625 evaSnp4,644 evaSnp4,735 evaSnp4,739 evaSnp4,861 evaSnp4,904 evaSnp4,939 evaSnp4,942 evaSnp4,1189 evaSnp4,1208 evaSnp5,22 evaSnp5,84 evaSnp5,92 evaSnp5,119 evaSnp5,234 evaSnp5,243 evaSnp5,275 evaSnp5,406 evaSnp5,410 evaSnp5,479 evaSnp5,537 evaSnp5,587 evaSnp5,608 evaSnp5,614 evaSnp5,625 evaSnp5,644 evaSnp5,735 evaSnp5,739 evaSnp5,861 evaSnp5,904 evaSnp5,939 evaSnp5,942 evaSnp5,1189 evaSnp5,1208 gap,40 gap,63 gap,82 gap,88 gap,122 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 intronEst,31 intronEst,52 intronEst,64 intronEst,96 intronEst,108 intronEst,117 intronEst,151 intronEst,160 intronEst,178 intronEst,180 intronEst,215 intronEst,254 intronEst,280 intronEst,291 intronEst,327 intronEst,396 intronEst,506 intronEst,583 intronEst,599 intronEst,617 intronEst,634 intronEst,696 intronEst,704 intronEst,708 intronEst,787 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netHg38,17 netHg38,64 netHg38,179 netHg38,199 netHg38,251 netHg38,272 netHg38,354 netHg38,364 netHg38,482 netHg38,502 netHg38,635 netHg38,640 netHg38,658 netHg38,678 netHg38,878 netHg38,953 netHg38,975 netHg38,999 netHg38,1013 netMm10,17 netMm10,64 netMm10,179 netMm10,199 netMm10,251 netMm10,272 netMm10,354 netMm10,364 netMm10,482 netMm10,502 netMm10,635 netMm10,640 netMm10,658 netMm10,678 netMm10,878 netMm10,953 netMm10,975 netMm10,999 netMm10,1013 refGene,5 refGene,101 refGene,120 refGene,134 refGene,159 refGene,270 refGene,302 refGene,415 refSeqComposite,161 refSeqComposite,194 refSeqComposite,212 refSeqComposite,259 refSeqComposite,320 refSeqComposite,342 refSeqComposite,436 refSeqComposite,486 refSeqComposite,517 refSeqComposite,524 refSeqComposite,550 refSeqComposite,608 refSeqComposite,628 refSeqComposite,706 refSeqComposite,734 refSeqComposite,783 refSeqComposite,792 refSeqComposite,872 refSeqComposite,887 refSeqComposite,939 refSeqComposite,985 refSeqComposite,1003 refSeqComposite,1051 refSeqComposite,1238 refSeqComposite,1270 refSeqComposite,1343 refSeqComposite,1424 refSeqComposite,1426 refSeqComposite,1496 refSeqComposite,1566 refSeqComposite,1646 refSeqComposite,1692 refSeqComposite,1696 refSeqComposite,1802 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 tanDups,27 tanDups,48 tanDups,61 tanDups,87 tanDups,101 tanDups,108 tanDups,116 tanDups,125 tanDups,138 tanDups,226 tanDups,239 tanDups,249 tanDups,312 tanDups,326 tanDups,349 tanDups,357 tanDups,419 tanDups,431 tanDups,461 tanDups,477 tanDups,493 tanDups,500 transMapEnsemblV5,85 transMapEnsemblV5,139 transMapEnsemblV5,168 transMapEnsemblV5,207 transMapEnsemblV5,273 transMapEnsemblV5,280 transMapEnsemblV5,296 transMapEnsemblV5,308 transMapEnsemblV5,321 transMapEnsemblV5,338 transMapEnsemblV5,357 transMapEnsemblV5,375 transMapEnsemblV5,454 transMapEnsemblV5,505 transMapEnsemblV5,548 transMapEnsemblV5,736 transMapEnsemblV5,801 transMapEstV5,54 transMapEstV5,108 transMapEstV5,137 transMapEstV5,176 transMapEstV5,242 transMapEstV5,249 transMapEstV5,265 transMapEstV5,277 transMapEstV5,290 transMapEstV5,307 transMapEstV5,326 transMapEstV5,344 transMapEstV5,423 transMapEstV5,474 transMapEstV5,517 transMapEstV5,705 transMapEstV5,770 transMapRefSeqV5,54 transMapRefSeqV5,108 transMapRefSeqV5,137 transMapRefSeqV5,176 transMapRefSeqV5,242 transMapRefSeqV5,249 transMapRefSeqV5,265 transMapRefSeqV5,277 transMapRefSeqV5,290 transMapRefSeqV5,307 transMapRefSeqV5,326 transMapRefSeqV5,344 transMapRefSeqV5,423 transMapRefSeqV5,474 transMapRefSeqV5,517 transMapRefSeqV5,705 transMapRefSeqV5,770 transMapRnaV5,54 transMapRnaV5,108 transMapRnaV5,137 transMapRnaV5,176 transMapRnaV5,242 transMapRnaV5,249 transMapRnaV5,265 transMapRnaV5,277 transMapRnaV5,290 transMapRnaV5,307 transMapRnaV5,326 transMapRnaV5,344 transMapRnaV5,423 transMapRnaV5,474 transMapRnaV5,517 transMapRnaV5,705 transMapRnaV5,770 transMapV5,55 transMapV5,214 transMapV5,243 transMapV5,282 transMapV5,348 transMapV5,355 transMapV5,371 transMapV5,383 transMapV5,396 transMapV5,413 transMapV5,432 transMapV5,450 transMapV5,529 transMapV5,580 transMapV5,623 transMapV5,811 transMapV5,876 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoMrna,17 xenoMrna,56 xenoMrna,74 xenoMrna,96 xenoMrna,106 xenoMrna,155 xenoMrna,194 xenoMrna,220 xenoMrna,231 xenoMrna,267 xenoMrna,336 xenoMrna,439 xenoMrna,497 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainHg38,333 chainHg38,339 chainMm10,333 chainMm10,339 chainNetHg38,336 chainNetHg38,342 chainNetMm10,336 chainNetMm10,342 netHg38,333 netHg38,339 netMm10,333 netMm10,339 refGene,172 refSeqComposite,806 xenoRefGene,132 offers genscan,79 often HLTOGAannotvHg38v1,206 chainHg38,209 chainHg38,221 chainMm10,209 chainMm10,221 chainNetHg38,212 chainNetHg38,224 chainNetMm10,212 chainNetMm10,224 netHg38,209 netHg38,221 netMm10,209 netMm10,221 older uniprot,1560 uniprot,1647 oligo-dt est,495 intronEst,576 omim refSeqComposite,780 refSeqComposite,799 omitted nestedRepeats,165 on HLTOGAannotvHg38v1,79 HLTOGAannotvHg38v1,295 augustusGene,29 augustusGene,37 augustusGene,151 chainHg38,321 chainHg38,347 chainHg38,450 chainHg38,464 chainHg38,514 chainHg38,519 chainHg38,534 chainHg38,765 chainMm10,321 chainMm10,347 chainMm10,450 chainMm10,464 chainMm10,514 chainMm10,519 chainMm10,534 chainMm10,765 chainNetHg38,324 chainNetHg38,350 chainNetHg38,453 chainNetHg38,467 chainNetHg38,517 chainNetHg38,522 chainNetHg38,537 chainNetHg38,768 chainNetMm10,324 chainNetMm10,350 chainNetMm10,453 chainNetMm10,467 chainNetMm10,517 chainNetMm10,522 chainNetMm10,537 chainNetMm10,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 est,229 est,278 evaSnp,204 evaSnp,209 evaSnp,379 evaSnp,837 evaSnp,938 evaSnp4,204 evaSnp4,209 evaSnp4,379 evaSnp4,858 evaSnp4,979 evaSnp5,204 evaSnp5,209 evaSnp5,379 evaSnp5,858 evaSnp5,979 gap,85 genscan,27 genscan,52 intronEst,310 intronEst,359 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netHg38,321 netHg38,347 netHg38,450 netHg38,464 netHg38,514 netHg38,519 netHg38,534 netHg38,765 netMm10,321 netMm10,347 netMm10,450 netMm10,464 netMm10,514 netMm10,519 netMm10,534 netMm10,765 refGene,72 refGene,383 refSeqComposite,131 refSeqComposite,181 refSeqComposite,238 refSeqComposite,252 refSeqComposite,360 refSeqComposite,513 refSeqComposite,566 refSeqComposite,972 refSeqComposite,1116 refSeqComposite,1596 refSeqComposite,1638 refSeqComposite,1676 refSeqComposite,1701 refSeqComposite,1770 rmsk,74 tanDups,24 tanDups,105 transMapEnsemblV5,567 transMapEnsemblV5,804 transMapEstV5,536 transMapEstV5,773 transMapRefSeqV5,536 transMapRefSeqV5,773 transMapRnaV5,536 transMapRnaV5,773 transMapV5,102 transMapV5,642 transMapV5,879 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoMrna,250 xenoMrna,299 xenoRefGene,342 once est,263 intronEst,344 mrna,209 uniprot,647 xenoMrna,284 one augustusGene,169 chainHg38,187 chainHg38,355 chainHg38,501 chainHg38,792 chainHg38,888 chainMm10,187 chainMm10,355 chainMm10,501 chainMm10,792 chainMm10,888 chainNetHg38,190 chainNetHg38,358 chainNetHg38,504 chainNetHg38,795 chainNetHg38,891 chainNetMm10,190 chainNetMm10,358 chainNetMm10,504 chainNetMm10,795 chainNetMm10,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 est,170 est,281 est,314 evaSnp,322 evaSnp,460 evaSnp,483 evaSnp,497 evaSnp,533 evaSnp,547 evaSnp,605 evaSnp,618 evaSnp4,322 evaSnp4,478 evaSnp4,501 evaSnp4,515 evaSnp4,551 evaSnp4,565 evaSnp4,623 evaSnp4,636 evaSnp5,322 evaSnp5,478 evaSnp5,501 evaSnp5,515 evaSnp5,551 evaSnp5,565 evaSnp5,623 evaSnp5,636 gold,159 intronEst,67 intronEst,251 intronEst,362 intronEst,395 mrna,116 mrna,227 mrna,260 netHg38,187 netHg38,355 netHg38,501 netHg38,792 netHg38,888 netMm10,187 netMm10,355 netMm10,501 netMm10,792 netMm10,888 tanDups,292 tanDups,364 transMapV5,77 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 xenoMrna,191 xenoMrna,302 xenoMrna,335 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainHg38,351 chainMm10,351 chainNetHg38,354 chainNetMm10,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 est,154 est,294 est,367 est,400 est,697 evaSnp,1065 evaSnp4,1106 evaSnp5,1106 intronEst,235 intronEst,375 intronEst,448 intronEst,481 intronEst,778 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netHg38,351 netMm10,351 refGene,248 refGene,293 refSeqComposite,157 refSeqComposite,217 refSeqComposite,234 refSeqComposite,246 refSeqComposite,512 refSeqComposite,564 refSeqComposite,1261 refSeqComposite,1533 tanDups,273 transMapEnsemblV5,49 transMapEnsemblV5,650 transMapEstV5,619 transMapRefSeqV5,619 transMapRnaV5,619 transMapV5,725 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoMrna,175 xenoMrna,315 xenoMrna,388 xenoMrna,487 xenoRefGene,208 xenoRefGene,253 ontology evaSnp,282 evaSnp,452 evaSnp,465 evaSnp,783 evaSnp4,282 evaSnp4,470 evaSnp4,483 evaSnp4,804 evaSnp5,282 evaSnp5,470 evaSnp5,483 evaSnp5,804 oommen transMapEnsemblV5,728 transMapEstV5,697 transMapRefSeqV5,697 transMapRnaV5,697 transMapV5,803 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainHg38,546 chainMm10,546 chainNetHg38,549 chainNetMm10,549 netHg38,546 netMm10,546 option augustusGene,167 augustusGene,187 est,413 genscan,94 intronEst,494 mrna,350 refGene,152 refGene,204 refSeqComposite,773 refSeqComposite,838 transMapEnsemblV5,134 transMapEstV5,103 transMapRefSeqV5,103 transMapRnaV5,103 transMapV5,209 xenoMrna,425 xenoRefGene,112 xenoRefGene,164 optional refGene,182 refSeqComposite,816 xenoRefGene,142 options est,442 gc5BaseBw,70 genscan,85 intronEst,523 mrna,381 xenoMrna,456 or HLTOGAannotvHg38v1,39 HLTOGAannotvHg38v1,96 HLTOGAannotvHg38v1,264 chainHg38,30 chainHg38,127 chainHg38,150 chainHg38,182 chainHg38,485 chainHg38,860 chainHg38,889 chainMm10,30 chainMm10,127 chainMm10,150 chainMm10,182 chainMm10,485 chainMm10,860 chainMm10,889 chainNetHg38,33 chainNetHg38,130 chainNetHg38,153 chainNetHg38,185 chainNetHg38,488 chainNetHg38,863 chainNetHg38,892 chainNetMm10,33 chainNetMm10,130 chainNetMm10,153 chainNetMm10,185 chainNetMm10,488 chainNetMm10,863 chainNetMm10,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 est,171 est,306 est,325 est,334 est,399 est,477 est,509 est,523 evaSnp,77 evaSnp,135 evaSnp,189 evaSnp,195 evaSnp,288 evaSnp,442 evaSnp,484 evaSnp,534 evaSnp,763 evaSnp,953 evaSnp,978 evaSnp,1017 evaSnp,1037 evaSnp4,77 evaSnp4,135 evaSnp4,189 evaSnp4,195 evaSnp4,288 evaSnp4,402 evaSnp4,460 evaSnp4,502 evaSnp4,552 evaSnp4,784 evaSnp4,931 evaSnp4,994 evaSnp4,1019 evaSnp4,1058 evaSnp4,1078 evaSnp5,77 evaSnp5,135 evaSnp5,189 evaSnp5,195 evaSnp5,288 evaSnp5,402 evaSnp5,460 evaSnp5,502 evaSnp5,552 evaSnp5,784 evaSnp5,931 evaSnp5,994 evaSnp5,1019 evaSnp5,1058 evaSnp5,1078 intronEst,252 intronEst,387 intronEst,406 intronEst,415 intronEst,480 intronEst,558 intronEst,590 intronEst,604 mrna,117 mrna,252 mrna,271 mrna,280 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netHg38,30 netHg38,127 netHg38,150 netHg38,182 netHg38,485 netHg38,860 netHg38,889 netMm10,30 netMm10,127 netMm10,150 netMm10,182 netMm10,485 netMm10,860 netMm10,889 refGene,62 refGene,170 refSeqComposite,85 refSeqComposite,121 refSeqComposite,227 refSeqComposite,279 refSeqComposite,354 refSeqComposite,400 refSeqComposite,409 refSeqComposite,415 refSeqComposite,424 refSeqComposite,619 refSeqComposite,640 refSeqComposite,688 refSeqComposite,779 refSeqComposite,789 refSeqComposite,804 refSeqComposite,948 refSeqComposite,970 refSeqComposite,1049 refSeqComposite,1310 refSeqComposite,1325 refSeqComposite,1492 refSeqComposite,1514 rmsk,251 rmsk,280 tanDups,352 transMapEnsemblV5,19 transMapEnsemblV5,531 transMapEnsemblV5,559 transMapEnsemblV5,602 transMapEnsemblV5,622 transMapEstV5,500 transMapEstV5,528 transMapEstV5,571 transMapEstV5,591 transMapRefSeqV5,500 transMapRefSeqV5,528 transMapRefSeqV5,571 transMapRefSeqV5,591 transMapRnaV5,500 transMapRnaV5,528 transMapRnaV5,571 transMapRnaV5,591 transMapV5,47 transMapV5,606 transMapV5,634 transMapV5,677 transMapV5,697 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoMrna,92 xenoMrna,192 xenoMrna,327 xenoMrna,346 xenoMrna,355 xenoRefGene,130 order gap,79 gold,110 uniprot,872 organ est,195 est,201 intronEst,276 intronEst,282 mrna,141 mrna,147 xenoMrna,216 xenoMrna,222 organism chainHg38,330 chainHg38,360 chainMm10,330 chainMm10,360 chainNetHg38,333 chainNetHg38,363 chainNetMm10,333 chainNetMm10,363 evaSnp,705 evaSnp4,717 evaSnp5,717 netHg38,330 netHg38,360 netMm10,330 netMm10,360 organisms chainHg38,905 chainMm10,905 chainNetHg38,908 chainNetMm10,908 evaSnp,385 evaSnp4,385 evaSnp5,385 nestedRepeats,295 netHg38,905 netMm10,905 rmsk,302 transMapEnsemblV5,159 transMapEnsemblV5,216 transMapEstV5,128 transMapEstV5,185 transMapRefSeqV5,128 transMapRefSeqV5,185 transMapRnaV5,128 transMapRnaV5,185 transMapV5,64 transMapV5,152 transMapV5,234 transMapV5,291 uniprot,998 xenoMrna,25 xenoRefGene,20 organized refSeqComposite,1373 organizes chainHg38,614 chainMm10,614 chainNetHg38,617 chainNetMm10,617 netHg38,614 netMm10,614 orientation chainHg38,547 chainMm10,547 chainNetHg38,550 chainNetMm10,550 cytoBandIdeo,6 gap,81 gold,112 netHg38,547 netMm10,547 xenoMrna,73 xenoMrna,95 orientations xenoMrna,105 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous HLTOGAannotvHg38v1,121 transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs HLTOGAannotvHg38v1,20 HLTOGAannotvHg38v1,33 HLTOGAannotvHg38v1,93 chainHg38,284 chainMm10,284 chainNetHg38,287 chainNetMm10,287 netHg38,284 netMm10,284 transMapV5,94 orthology HLTOGAannotvHg38v1,303 HLTOGAannotvHg38v1,360 osipova HLTOGAannotvHg38v1,338 ostell est,753 est,777 intronEst,837 intronEst,861 mrna,470 mrna,494 xenoMrna,545 xenoMrna,569 other augustusGene,208 chainHg38,24 chainHg38,412 chainHg38,505 chainMm10,24 chainMm10,412 chainMm10,505 chainNetHg38,27 chainNetHg38,415 chainNetHg38,508 chainNetMm10,27 chainNetMm10,415 chainNetMm10,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 gold,160 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netHg38,24 netHg38,412 netHg38,505 netMm10,24 netMm10,412 netMm10,505 refSeqComposite,274 refSeqComposite,378 refSeqComposite,381 refSeqComposite,1367 refSeqComposite,1393 rmsk,195 rmsk,399 tanDups,200 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,368 transMapEstV5,28 transMapEstV5,337 transMapRefSeqV5,28 transMapRefSeqV5,337 transMapRnaV5,28 transMapRnaV5,337 transMapV5,27 transMapV5,443 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoMrna,1 xenoMrna,26 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 est,678 intronEst,759 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 evaSnp,966 evaSnp,972 evaSnp,979 evaSnp,1004 evaSnp,1026 evaSnp4,1007 evaSnp4,1013 evaSnp4,1020 evaSnp4,1045 evaSnp4,1067 evaSnp5,1007 evaSnp5,1013 evaSnp5,1020 evaSnp5,1045 evaSnp5,1067 genscan,58 refGene,78 refSeqComposite,137 refSeqComposite,1321 refSeqComposite,1328 refSeqComposite,1344 refSeqComposite,1359 refSeqComposite,1483 refSeqComposite,1503 refSeqComposite,1624 refSeqComposite,1677 refSeqComposite,1684 refSeqComposite,1702 rmsk,124 rmsk,129 transMapEnsemblV5,556 transMapEnsemblV5,562 transMapEnsemblV5,572 transMapEnsemblV5,611 transMapEstV5,525 transMapEstV5,531 transMapEstV5,541 transMapEstV5,580 transMapRefSeqV5,525 transMapRefSeqV5,531 transMapRefSeqV5,541 transMapRefSeqV5,580 transMapRnaV5,525 transMapRnaV5,531 transMapRnaV5,541 transMapRnaV5,580 transMapV5,631 transMapV5,637 transMapV5,647 transMapV5,686 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainHg38,634 chainMm10,634 chainNetHg38,637 chainNetMm10,637 netHg38,634 netMm10,634 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 tanDups,217 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside est,614 intronEst,695 refSeqComposite,686 uniprot,558 over chainHg38,195 chainHg38,649 chainMm10,195 chainMm10,649 chainNetHg38,198 chainNetHg38,652 chainNetMm10,198 chainNetMm10,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 evaSnp,302 evaSnp4,302 evaSnp5,302 netHg38,195 netHg38,649 netMm10,195 netMm10,649 refSeqComposite,1031 tanDups,37 tanDups,156 tandemDups,8 uniprot,522 uniprot,536 overlap tanDups,181 overlapping chainHg38,112 chainHg38,175 chainMm10,112 chainMm10,175 chainNetHg38,115 chainNetHg38,178 chainNetMm10,115 chainNetMm10,178 netHg38,112 netHg38,175 netMm10,112 netMm10,175 tanDups,303 overlaps tanDups,19 tanDups,43 tanDups,96 tanDups,465 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainHg38,1033 chainMm10,1033 chainNetHg38,1036 chainNetMm10,1036 netHg38,1033 netMm10,1033 pack chainHg38,231 chainMm10,231 chainNetHg38,234 chainNetMm10,234 nestedRepeats,116 netHg38,231 netMm10,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 est,110 est,422 est,443 evaSnp,218 evaSnp4,218 evaSnp5,218 genscan,78 genscan,123 intronEst,191 intronEst,503 intronEst,524 mrna,56 mrna,361 mrna,382 refGene,54 refGene,138 refGene,229 refSeqComposite,113 refSeqComposite,738 refSeqComposite,863 refSeqComposite,1123 refSeqComposite,1641 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoMrna,131 xenoMrna,436 xenoMrna,457 xenoRefGene,98 xenoRefGene,189 pages chainHg38,770 chainMm10,770 chainNetHg38,773 chainNetMm10,773 netHg38,770 netMm10,770 pair gap,95 tanDups,100 tanDups,285 paired tanDups,3 tanDups,20 tanDups,32 tanDups,62 tanDups,166 tanDups,256 tanDups,359 tandemDups,3 pairs tanDups,305 tanDups,320 tanDups,329 tanDups,332 tanDups,344 tanDups,372 tanDups,414 tanDups,425 tanDups,434 tanDups,443 tanDups,452 pairwise chainHg38,1011 chainHg38,1029 chainMm10,1011 chainMm10,1029 chainNetHg38,1014 chainNetHg38,1032 chainNetMm10,1014 chainNetMm10,1032 netHg38,1011 netHg38,1029 netMm10,1011 netMm10,1029 transMapEnsemblV5,336 transMapEstV5,305 transMapRefSeqV5,305 transMapRnaV5,305 transMapV5,83 transMapV5,411 paradigm HLTOGAannotvHg38v1,76 paralogous transMapEnsemblV5,300 transMapEstV5,269 transMapRefSeqV5,269 transMapRnaV5,269 transMapV5,375 paralogs HLTOGAannotvHg38v1,95 chainHg38,224 chainMm10,224 chainNetHg38,227 chainNetMm10,227 netHg38,224 netMm10,224 transMapV5,160 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 evaSnp,638 evaSnp4,656 evaSnp5,656 parentheses gold,147 part chainHg38,271 chainMm10,271 chainNetHg38,274 chainNetMm10,274 netHg38,271 netMm10,271 refSeqComposite,523 partially HLTOGAannotvHg38v1,165 particular augustusGene,234 chainHg38,197 chainMm10,197 chainNetHg38,200 chainNetMm10,200 netHg38,197 netMm10,197 refSeqComposite,296 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts HLTOGAannotvHg38v1,200 chainHg38,39 chainHg38,50 chainMm10,39 chainMm10,50 chainNetHg38,42 chainNetHg38,53 chainNetMm10,42 chainNetMm10,53 netHg38,39 netHg38,50 netMm10,39 netMm10,50 xenoMrna,68 passed evaSnp,694 evaSnp4,706 evaSnp5,706 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 paten tanDups,476 patterns augustusGene,56 pennsylvania chainHg38,916 chainHg38,1019 chainMm10,916 chainMm10,1019 chainNetHg38,919 chainNetHg38,1022 chainNetMm10,919 chainNetMm10,1022 netHg38,916 netHg38,1019 netMm10,916 netMm10,1019 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 tanDups,220 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 est,605 intronEst,686 period microsat,65 permitted rmsk,314 persepective evaSnp,891 evaSnp4,914 evaSnp5,914 perspective evaSnp,881 evaSnp4,903 evaSnp5,903 ph.d chainHg38,1016 chainMm10,1016 chainNetHg38,1019 chainNetMm10,1019 netHg38,1016 netMm10,1016 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 pia uniprot,1971 pick uniprot,1089 pipeline refSeqComposite,1189 uniprot,1537 pipelines uniprot,1850 place chainHg38,789 chainMm10,789 chainNetHg38,792 chainNetMm10,792 netHg38,789 netMm10,789 placed chainHg38,831 chainMm10,831 chainNetHg38,834 chainNetMm10,834 netHg38,831 netMm10,831 placement refSeqComposite,964 places est,687 intronEst,768 mrna,403 refGene,283 refSeqComposite,1251 xenoMrna,477 xenoRefGene,243 plasmid est,466 intronEst,547 please ensGene,41 ensGene,160 evaSnp,969 evaSnp4,1010 evaSnp5,1010 refGene,44 refSeqComposite,102 refSeqComposite,1109 refSeqComposite,1681 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,808 transMapEstV5,777 transMapRefSeqV5,777 transMapRnaV5,777 transMapV5,883 plus refSeqComposite,898 pmc HLTOGAannotvHg38v1,373 chainHg38,1078 chainHg38,1109 chainMm10,1078 chainMm10,1109 chainNetHg38,1081 chainNetHg38,1112 chainNetMm10,1081 chainNetMm10,1112 ensGene,206 est,769 est,795 est,813 evaSnp,1207 evaSnp4,1252 evaSnp5,1252 intronEst,853 intronEst,879 intronEst,897 microsat,136 mrna,486 mrna,512 mrna,530 netHg38,1078 netHg38,1109 netMm10,1078 netMm10,1109 refGene,356 refGene,398 refGene,432 refSeqComposite,1743 refSeqComposite,1785 refSeqComposite,1819 simpleRepeat,96 transMapEnsemblV5,752 transMapEnsemblV5,818 transMapEstV5,721 transMapEstV5,787 transMapRefSeqV5,721 transMapRefSeqV5,787 transMapRnaV5,721 transMapRnaV5,787 transMapV5,827 transMapV5,893 uniprot,2008 xenoMrna,561 xenoMrna,587 xenoMrna,605 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc10193443 HLTOGAannotvHg38v1,374 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,814 intronEst,898 mrna,531 refGene,357 refSeqComposite,1744 xenoMrna,606 xenoRefGene,316 pmc208784 chainHg38,1079 chainMm10,1079 chainNetHg38,1082 chainNetMm10,1082 netHg38,1079 netMm10,1079 pmc2099585 transMapEnsemblV5,753 transMapEstV5,722 transMapRefSeqV5,722 transMapRnaV5,722 transMapV5,828 pmc2134963 transMapEnsemblV5,819 transMapEstV5,788 transMapRefSeqV5,788 transMapRnaV5,788 transMapV5,894 pmc308779 est,796 intronEst,880 mrna,513 xenoMrna,588 pmc3245120 uniprot,2009 pmc3531190 est,770 intronEst,854 mrna,487 xenoMrna,562 pmc3965018 refGene,399 refSeqComposite,1786 xenoRefGene,358 pmc430961 chainHg38,1110 chainMm10,1110 chainNetHg38,1113 chainNetMm10,1113 netHg38,1110 netMm10,1110 pmc4848401 evaSnp,1208 evaSnp4,1253 evaSnp5,1253 pmc539979 refGene,433 refSeqComposite,1820 xenoRefGene,392 pmc8728205 evaSnp,1168 evaSnp4,1213 evaSnp5,1213 pmc99161 ensGene,207 pmid HLTOGAannotvHg38v1,371 augustusGene,314 augustusGene,339 chainHg38,1038 chainHg38,1076 chainHg38,1107 chainMm10,1038 chainMm10,1076 chainMm10,1107 chainNetHg38,1041 chainNetHg38,1079 chainNetHg38,1110 chainNetMm10,1041 chainNetMm10,1079 chainNetMm10,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 est,767 est,793 est,811 evaSnp,1165 evaSnp,1167 evaSnp,1205 evaSnp4,1210 evaSnp4,1212 evaSnp4,1250 evaSnp5,1210 evaSnp5,1212 evaSnp5,1250 genscan,229 intronEst,851 intronEst,877 intronEst,895 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netHg38,1038 netHg38,1076 netHg38,1107 netMm10,1038 netMm10,1076 netMm10,1107 refGene,354 refGene,396 refGene,430 refSeqComposite,1741 refSeqComposite,1783 refSeqComposite,1817 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,750 transMapEnsemblV5,782 transMapEnsemblV5,816 transMapEstV5,719 transMapEstV5,751 transMapEstV5,785 transMapRefSeqV5,719 transMapRefSeqV5,751 transMapRefSeqV5,785 transMapRnaV5,719 transMapRnaV5,751 transMapRnaV5,785 transMapV5,825 transMapV5,857 transMapV5,891 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoMrna,559 xenoMrna,585 xenoMrna,603 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point est,548 intronEst,629 rmsk,269 poly-a augustusGene,62 est,500 est,574 intronEst,581 intronEst,655 polymorphic microsat,41 simpleRepeat,46 polymorphisms evaSnp,113 evaSnp4,113 evaSnp5,113 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainHg38,705 chainMm10,705 chainNetHg38,708 chainNetMm10,708 evaSnp,201 evaSnp4,201 evaSnp5,201 netHg38,705 netMm10,705 refSeqComposite,983 uniprot,610 positions HLTOGAannotvHg38v1,109 uniprot,1495 possible chainHg38,406 chainMm10,406 chainNetHg38,409 chainNetMm10,409 evaSnp,367 evaSnp4,367 evaSnp4,415 evaSnp4,744 evaSnp5,367 evaSnp5,415 evaSnp5,744 netHg38,406 netMm10,406 refSeqComposite,185 uniprot,601 possibly chainHg38,283 chainMm10,283 chainNetHg38,286 chainNetMm10,286 netHg38,283 netMm10,283 simpleRepeat,18 post-alignment transMapEnsemblV5,303 transMapEstV5,272 transMapRefSeqV5,272 transMapRnaV5,272 transMapV5,378 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 potentially evaSnp,407 evaSnp4,425 evaSnp5,425 pre-mrna genscan,185 precompiled evaSnp,1041 evaSnp4,1082 evaSnp5,1082 refSeqComposite,1518 transMapEnsemblV5,626 transMapEstV5,595 transMapRefSeqV5,595 transMapRnaV5,595 transMapV5,701 uniprot,1780 predict evaSnp,701 evaSnp,713 evaSnp4,713 evaSnp5,713 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 evaSnp,731 evaSnp,851 evaSnp,1101 evaSnp4,752 evaSnp4,872 evaSnp4,1142 evaSnp5,752 evaSnp5,872 evaSnp5,1142 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refGene,108 refSeqComposite,203 refSeqComposite,339 refSeqComposite,358 refSeqComposite,403 refSeqComposite,589 refSeqComposite,615 refSeqComposite,691 refSeqComposite,711 refSeqComposite,1411 refSeqComposite,1671 uniprot,48 uniprot,193 xenoMrna,112 xenoRefGene,68 prediction augustusGene,321 evaSnp,411 evaSnp4,429 evaSnp5,429 genscan,73 genscan,211 refGene,93 refSeqComposite,375 refSeqComposite,600 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,53 predictions HLTOGAannotvHg38v1,14 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 evaSnp,378 evaSnp4,378 evaSnp5,378 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqGenomicDiff,15 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refGene,14 refGene,195 refGene,224 refSeqComposite,10 refSeqComposite,829 refSeqComposite,858 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared HLTOGAannotvHg38v1,318 gc5BaseBw,80 tanDups,504 ucscToINSDC,49 ucscToRefSeq,43 uniprot,712 present HLTOGAannotvHg38v1,152 HLTOGAannotvHg38v1,172 HLTOGAannotvHg38v1,219 HLTOGAannotvHg38v1,278 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 tanDups,499 preserves tanDups,323 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 evaSnp4,412 evaSnp4,741 evaSnp5,412 evaSnp5,741 refSeqComposite,1220 refSeqComposite,1335 refSeqComposite,1690 uniprot,1654 previously chainHg38,909 chainMm10,909 chainNetHg38,912 chainNetMm10,912 netHg38,909 netMm10,909 refSeqComposite,500 primary unipStruct,4 uniprot,360 primed est,492 intronEst,573 primer est,479 intronEst,560 priming est,575 intronEst,656 principal gap,120 pringle transMapEnsemblV5,792 transMapEstV5,761 transMapRefSeqV5,761 transMapRnaV5,761 transMapV5,867 print evaSnp,1164 evaSnp4,1209 evaSnp5,1209 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 pro evaSnp,876 evaSnp,888 evaSnp4,897 evaSnp4,911 evaSnp5,897 evaSnp5,911 problem uniprot,1359 uniprot,1389 problematic evaSnp,687 proc chainHg38,1063 chainMm10,1063 chainNetHg38,1066 chainNetMm10,1066 netHg38,1063 netMm10,1063 procedure tanDups,263 tanDups,322 tanDups,437 uniprot,990 procedures gap,22 gold,24 process chainHg38,813 chainMm10,813 chainNetHg38,816 chainNetMm10,816 netHg38,813 netMm10,813 refSeqComposite,647 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed HLTOGAannotvHg38v1,97 chainHg38,212 chainMm10,212 chainNetHg38,215 chainNetMm10,215 netHg38,212 netMm10,212 processing evaSnp,900 evaSnp4,941 evaSnp5,941 refSeqComposite,1333 produced est,725 evaSnp,1090 evaSnp4,1131 evaSnp5,1131 intronEst,809 mrna,442 refGene,321 refSeqComposite,383 refSeqComposite,1710 transMapEnsemblV5,22 transMapEnsemblV5,677 transMapEnsemblV5,701 transMapEstV5,20 transMapEstV5,646 transMapEstV5,670 transMapRefSeqV5,20 transMapRefSeqV5,646 transMapRefSeqV5,670 transMapRnaV5,20 transMapRnaV5,646 transMapRnaV5,670 transMapV5,19 transMapV5,141 transMapV5,752 transMapV5,776 xenoMrna,81 xenoMrna,517 xenoRefGene,281 produces refSeqComposite,48 tanDups,445 products unipChain,5 program augustusGene,21 augustusGene,257 chainHg38,605 chainHg38,645 chainHg38,783 chainHg38,836 chainHg38,868 chainHg38,944 chainHg38,947 chainMm10,605 chainMm10,645 chainMm10,783 chainMm10,836 chainMm10,868 chainMm10,944 chainMm10,947 chainNetHg38,608 chainNetHg38,648 chainNetHg38,786 chainNetHg38,839 chainNetHg38,871 chainNetHg38,947 chainNetHg38,950 chainNetMm10,608 chainNetMm10,648 chainNetMm10,786 chainNetMm10,839 chainNetMm10,871 chainNetMm10,947 chainNetMm10,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netHg38,605 netHg38,645 netHg38,783 netHg38,836 netHg38,868 netHg38,944 netHg38,947 netMm10,605 netMm10,645 netMm10,783 netMm10,836 netMm10,868 netMm10,944 netMm10,947 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,313 transMapEstV5,282 transMapRefSeqV5,282 transMapRnaV5,282 transMapV5,388 uniprot,1529 programmatic ensGene,99 programmatically refSeqComposite,1319 programs chainHg38,993 chainMm10,993 chainNetHg38,996 chainNetMm10,996 netHg38,993 netMm10,993 uniprot,1877 project ensGene,194 refGene,338 refSeqComposite,1158 refSeqComposite,1725 tanDups,73 xenoRefGene,298 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,320 transMapEstV5,289 transMapRefSeqV5,289 transMapRnaV5,289 transMapV5,395 projects est,569 est,588 est,618 intronEst,650 intronEst,669 intronEst,699 transMapEnsemblV5,709 transMapEstV5,678 transMapRefSeqV5,678 transMapRnaV5,678 transMapV5,784 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 proper evaSnp,677 evaSnp4,695 evaSnp5,695 properties refSeqComposite,718 prot.bed uniprot,1931 uniprot,1933 protein HLTOGAannotvHg38v1,270 HLTOGAannotvHg38v1,293 HLTOGAannotvHg38v1,308 HLTOGAannotvHg38v1,311 refSeqComposite,268 refSeqComposite,361 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 xenoMrna,80 xenoMrna,113 protein-altering evaSnp,431 evaSnp,737 evaSnp4,449 evaSnp4,758 evaSnp5,449 evaSnp5,758 protein-coding augustusGene,73 refGene,23 refGene,237 refSeqComposite,20 refSeqComposite,236 refSeqComposite,539 xenoRefGene,15 xenoRefGene,197 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins HLTOGAannotvHg38v1,163 HLTOGAannotvHg38v1,193 refGene,419 refSeqComposite,1806 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,378 protocadherin refSeqComposite,416 provide uniprot,1860 provided evaSnp,809 evaSnp4,830 evaSnp5,830 refSeqComposite,37 refSeqComposite,68 refSeqComposite,205 refSeqComposite,443 uniprot,817 provides HLTOGAannotvHg38v1,298 gap,32 gold,34 uniprot,489 providing augustusGene,254 ensGene,153 genscan,175 nestedRepeats,312 rmsk,335 provisional refGene,110 refSeqComposite,617 refSeqComposite,666 xenoRefGene,70 pruitt refGene,358 refGene,400 refSeqComposite,1745 refSeqComposite,1787 xenoRefGene,317 xenoRefGene,359 pseudogenes HLTOGAannotvHg38v1,98 chainHg38,213 chainHg38,227 chainMm10,213 chainMm10,227 chainNetHg38,216 chainNetHg38,230 chainNetMm10,216 chainNetMm10,230 netHg38,213 netHg38,227 netMm10,213 netMm10,227 refSeqComposite,408 uniprot,1184 psl est,54 intronEst,138 mrna,35 refSeqComposite,453 refSeqComposite,1175 refSeqComposite,1416 tanDups,216 transMapEnsemblV5,102 transMapEstV5,71 transMapRefSeqV5,71 transMapRnaV5,71 transMapV5,177 uniprot,1479 xenoMrna,40 pslcdnafilter transMapEnsemblV5,351 transMapEstV5,320 transMapRefSeqV5,320 transMapRnaV5,320 transMapV5,426 pslmap transMapEnsemblV5,312 transMapEstV5,281 transMapRefSeqV5,281 transMapRnaV5,281 transMapV5,387 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 est,736 intronEst,820 mrna,453 refSeqComposite,1322 refSeqComposite,1625 transMapEnsemblV5,693 transMapEstV5,662 transMapRefSeqV5,662 transMapRnaV5,662 transMapV5,768 uniprot,709 xenoMrna,528 publications refSeqComposite,253 refSeqComposite,423 uniprot,38 publicly nestedRepeats,275 pull-down refGene,211 refSeqComposite,845 xenoRefGene,171 purpose simpleRepeat,32 q tanDups,206 uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainHg38,717 chainMm10,717 chainNetHg38,720 chainNetMm10,720 netHg38,717 netMm10,717 quality est,72 mrna,53 xenoMrna,58 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 evaSnp,964 evaSnp4,1005 evaSnp5,1005 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 query HLTOGAannotvHg38v1,70 HLTOGAannotvHg38v1,126 HLTOGAannotvHg38v1,175 HLTOGAannotvHg38v1,222 rmsk,47 rmsk,61 uniprot,1484 xenoMrna,76 question tanDups,78 questions evaSnp,977 evaSnp4,1018 evaSnp5,1018 refSeqComposite,1689 uniprot,1834 quickly mrna,338 refGene,190 refSeqComposite,824 transMapEnsemblV5,122 transMapEstV5,91 transMapRefSeqV5,91 transMapRnaV5,91 transMapV5,197 xenoMrna,413 xenoRefGene,150 quite simpleRepeat,45 quot chainHg38,26 chainHg38,28 chainHg38,33 chainHg38,35 chainHg38,101 chainHg38,103 chainHg38,230 chainHg38,232 chainHg38,234 chainHg38,236 chainHg38,338 chainHg38,340 chainHg38,679 chainHg38,681 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,101 chainMm10,103 chainMm10,230 chainMm10,232 chainMm10,234 chainMm10,236 chainMm10,338 chainMm10,340 chainMm10,679 chainMm10,681 chainNetHg38,29 chainNetHg38,31 chainNetHg38,36 chainNetHg38,38 chainNetHg38,104 chainNetHg38,106 chainNetHg38,233 chainNetHg38,235 chainNetHg38,237 chainNetHg38,239 chainNetHg38,341 chainNetHg38,343 chainNetHg38,682 chainNetHg38,684 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,104 chainNetMm10,106 chainNetMm10,233 chainNetMm10,235 chainNetMm10,237 chainNetMm10,239 chainNetMm10,341 chainNetMm10,343 chainNetMm10,682 chainNetMm10,684 est,238 est,240 est,289 est,291 est,305 est,307 est,341 est,343 est,358 est,360 evaSnp,784 evaSnp,786 evaSnp4,805 evaSnp4,807 evaSnp5,805 evaSnp5,807 gc5BaseBw,58 gc5BaseBw,62 intronEst,319 intronEst,321 intronEst,370 intronEst,372 intronEst,386 intronEst,388 intronEst,422 intronEst,424 intronEst,439 intronEst,441 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netHg38,26 netHg38,28 netHg38,33 netHg38,35 netHg38,101 netHg38,103 netHg38,230 netHg38,232 netHg38,234 netHg38,236 netHg38,338 netHg38,340 netHg38,679 netHg38,681 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,101 netMm10,103 netMm10,230 netMm10,232 netMm10,234 netMm10,236 netMm10,338 netMm10,340 netMm10,679 netMm10,681 refSeqComposite,504 refSeqComposite,507 refSeqComposite,1430 refSeqComposite,1432 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 xenoMrna,259 xenoMrna,261 xenoMrna,310 xenoMrna,312 xenoMrna,326 xenoMrna,328 xenoMrna,362 xenoMrna,364 xenoMrna,379 xenoMrna,381 r augustusGene,291 chainHg38,1043 chainHg38,1089 chainMm10,1043 chainMm10,1089 chainNetHg38,1046 chainNetHg38,1092 chainNetMm10,1046 chainNetMm10,1092 nestedRepeats,327 netHg38,1043 netHg38,1089 netMm10,1043 netMm10,1089 rmsk,350 transMapEnsemblV5,759 transMapEstV5,728 transMapRefSeqV5,728 transMapRnaV5,728 transMapV5,834 windowmaskerSdust,99 r.s chainHg38,1008 chainMm10,1008 chainNetHg38,1011 chainNetMm10,1011 netHg38,1008 netMm10,1008 raised tanDups,76 random augustusGene,119 est,571 intronEst,652 random-primed est,617 intronEst,698 raney evaSnp,1171 evaSnp4,1216 evaSnp5,1216 uniprot,1960 range evaSnp,1070 evaSnp4,1111 evaSnp5,1111 gap,139 gap,157 nestedRepeats,227 nestedRepeats,236 refSeqComposite,984 tanDups,169 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1809 ranked chainHg38,780 chainMm10,780 chainNetHg38,783 chainNetMm10,783 netHg38,780 netMm10,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 rather est,572 intronEst,653 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1288 transMapEnsemblV5,518 transMapEstV5,487 transMapRefSeqV5,487 transMapRnaV5,487 transMapV5,593 uniprot,1708 rc chainHg38,1091 chainMm10,1091 chainNetHg38,1094 chainNetMm10,1094 netHg38,1091 netMm10,1091 rmsk,200 read est,470 evaSnp,904 evaSnp4,945 evaSnp5,945 gap,94 intronEst,551 refSeqComposite,1457 realigning refSeqComposite,50 realignment refSeqComposite,58 refSeqComposite,485 rearrangement chainHg38,289 chainHg38,492 chainHg38,1056 chainMm10,289 chainMm10,492 chainMm10,1056 chainNetHg38,292 chainNetHg38,495 chainNetHg38,1059 chainNetMm10,292 chainNetMm10,495 chainNetMm10,1059 netHg38,289 netHg38,492 netHg38,1056 netMm10,289 netMm10,492 netMm10,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 tanDups,407 reasonable tanDups,429 tanDups,455 reasonably est,538 est,561 gap,134 intronEst,619 intronEst,642 recently uniprot,1186 reciprocal transMapEnsemblV5,239 transMapEstV5,208 transMapRefSeqV5,208 transMapRnaV5,208 transMapV5,65 transMapV5,314 recommeneded evaSnp,916 evaSnp4,957 evaSnp5,957 record refGene,105 refSeqComposite,612 refSeqComposite,633 refSeqComposite,669 refSeqComposite,694 refSeqComposite,709 uniprot,496 xenoRefGene,65 records refGene,68 refSeqComposite,127 refSeqComposite,658 reduced intronEst,104 ref evaSnp,505 evaSnp,526 evaSnp,555 evaSnp,576 evaSnp,591 evaSnp,610 evaSnp,630 evaSnp4,523 evaSnp4,544 evaSnp4,573 evaSnp4,594 evaSnp4,609 evaSnp4,628 evaSnp4,648 evaSnp5,523 evaSnp5,544 evaSnp5,573 evaSnp5,594 evaSnp5,609 evaSnp5,628 evaSnp5,648 refer ensGene,42 evaSnp,970 evaSnp4,1011 evaSnp5,1011 genscan,144 refSeqComposite,1682 uniprot,1827 reference HLTOGAannotvHg38v1,10 HLTOGAannotvHg38v1,51 HLTOGAannotvHg38v1,68 HLTOGAannotvHg38v1,117 evaSnp,97 evaSnp,228 evaSnp,474 evaSnp,503 evaSnp,553 evaSnp4,97 evaSnp4,228 evaSnp4,492 evaSnp4,521 evaSnp4,571 evaSnp5,97 evaSnp5,228 evaSnp5,492 evaSnp5,521 evaSnp5,571 ncbiRefSeqGenomicDiff,10 refGene,32 refGene,51 refGene,385 refGene,407 refSeqComposite,29 refSeqComposite,110 refSeqComposite,463 refSeqComposite,876 refSeqComposite,1086 refSeqComposite,1772 refSeqComposite,1794 ucscToRefSeq,23 uniprot,1378 uniprot,1422 xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references HLTOGAannotvHg38v1,324 augustusGene,285 chainHg38,1006 chainMm10,1006 chainNetHg38,1009 chainNetMm10,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 est,742 evaSnp,1114 evaSnp4,1159 evaSnp5,1159 genscan,152 genscan,179 intronEst,826 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netHg38,1006 netMm10,1006 refGene,339 refSeqComposite,1726 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,1984 windowmaskerSdust,89 xenoMrna,534 xenoRefGene,299 refgene refSeqComposite,1415 transMapEnsemblV5,592 transMapEstV5,561 transMapRefSeqV5,2 transMapRefSeqV5,561 transMapRnaV5,561 transMapV5,667 reflects rmsk,213 refseq evaSnp,838 evaSnp,1111 evaSnp4,393 evaSnp4,407 evaSnp4,720 evaSnp4,736 evaSnp4,859 evaSnp4,1152 evaSnp5,393 evaSnp5,407 evaSnp5,720 evaSnp5,736 evaSnp5,859 evaSnp5,1152 ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqGenomicDiff,1 ncbiRefSeqGenomicDiff,6 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refGene,2 refGene,6 refGene,17 refGene,35 refGene,53 refGene,67 refGene,104 refGene,256 refGene,337 refGene,380 refGene,409 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,32 refSeqComposite,39 refSeqComposite,44 refSeqComposite,52 refSeqComposite,83 refSeqComposite,86 refSeqComposite,112 refSeqComposite,126 refSeqComposite,188 refSeqComposite,195 refSeqComposite,197 refSeqComposite,207 refSeqComposite,208 refSeqComposite,213 refSeqComposite,313 refSeqComposite,334 refSeqComposite,338 refSeqComposite,343 refSeqComposite,377 refSeqComposite,386 refSeqComposite,398 refSeqComposite,402 refSeqComposite,432 refSeqComposite,437 refSeqComposite,446 refSeqComposite,455 refSeqComposite,467 refSeqComposite,478 refSeqComposite,505 refSeqComposite,509 refSeqComposite,518 refSeqComposite,526 refSeqComposite,543 refSeqComposite,545 refSeqComposite,551 refSeqComposite,578 refSeqComposite,584 refSeqComposite,586 refSeqComposite,588 refSeqComposite,592 refSeqComposite,611 refSeqComposite,625 refSeqComposite,632 refSeqComposite,657 refSeqComposite,668 refSeqComposite,693 refSeqComposite,708 refSeqComposite,865 refSeqComposite,881 refSeqComposite,1092 refSeqComposite,1112 refSeqComposite,1127 refSeqComposite,1141 refSeqComposite,1144 refSeqComposite,1157 refSeqComposite,1164 refSeqComposite,1195 refSeqComposite,1205 refSeqComposite,1210 refSeqComposite,1221 refSeqComposite,1224 refSeqComposite,1352 refSeqComposite,1366 refSeqComposite,1369 refSeqComposite,1404 refSeqComposite,1407 refSeqComposite,1410 refSeqComposite,1414 refSeqComposite,1418 refSeqComposite,1568 refSeqComposite,1665 refSeqComposite,1667 refSeqComposite,1670 refSeqComposite,1724 refSeqComposite,1767 refSeqComposite,1796 transMapEnsemblV5,169 transMapEnsemblV5,704 transMapEstV5,138 transMapEstV5,673 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,138 transMapRefSeqV5,673 transMapRnaV5,138 transMapRnaV5,673 transMapV5,244 transMapV5,779 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 refseqdiffs refSeqComposite,1471 refseqother refSeqComposite,1469 regeneron uniprot,1968 region chainHg38,198 chainHg38,395 chainMm10,198 chainMm10,395 chainNetHg38,201 chainNetHg38,398 chainNetMm10,201 chainNetMm10,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 evaSnp,444 evaSnp,765 evaSnp4,462 evaSnp4,786 evaSnp5,462 evaSnp5,786 netHg38,198 netHg38,395 netMm10,198 netMm10,395 refSeqComposite,987 refSeqComposite,1538 uniprot,312 regions HLTOGAannotvHg38v1,85 augustusGene,76 chainHg38,16 chainHg38,134 chainHg38,282 chainMm10,16 chainMm10,134 chainMm10,282 chainNetHg38,19 chainNetHg38,137 chainNetHg38,285 chainNetMm10,19 chainNetMm10,137 chainNetMm10,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 evaSnp,1016 evaSnp4,1057 evaSnp5,1057 genscan,48 microsat,14 netHg38,16 netHg38,134 netHg38,282 netMm10,16 netMm10,134 netMm10,282 refSeqComposite,1491 simpleRepeat,39 transMapEnsemblV5,301 transMapEnsemblV5,601 transMapEstV5,270 transMapEstV5,570 transMapRefSeqV5,270 transMapRefSeqV5,570 transMapRnaV5,270 transMapRnaV5,570 transMapV5,376 transMapV5,676 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,74 uniprot,551 relationship chainHg38,846 chainMm10,846 chainNetHg38,849 chainNetMm10,849 est,93 intronEst,174 netHg38,846 netMm10,846 relative chainHg38,862 chainMm10,862 chainNetHg38,865 chainNetMm10,865 gap,78 gold,109 netHg38,862 netMm10,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release evaSnp,3 evaSnp,12 evaSnp,38 evaSnp,669 evaSnp,907 evaSnp,1096 evaSnp4,3 evaSnp4,12 evaSnp4,38 evaSnp4,687 evaSnp4,948 evaSnp4,1137 evaSnp5,3 evaSnp5,12 evaSnp5,38 evaSnp5,687 evaSnp5,948 evaSnp5,1137 refSeqComposite,1114 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,157 intronEst,238 mrna,103 uniprot,681 xenoMrna,178 relies HLTOGAannotvHg38v1,78 remain uniprot,1189 remaining chainHg38,685 chainMm10,685 chainNetHg38,688 chainNetMm10,688 netHg38,685 netMm10,685 tanDups,366 removed chainHg38,576 chainMm10,576 chainNetHg38,579 chainNetMm10,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 evaSnp,690 evaSnp4,930 evaSnp5,930 netHg38,576 netMm10,576 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,306 transMapEstV5,275 transMapRefSeqV5,275 transMapRnaV5,275 transMapV5,381 renamed evaSnp4,932 evaSnp5,932 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 tanDups,384 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainHg38,943 chainMm10,943 chainNetHg38,946 chainNetMm10,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netHg38,943 netMm10,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainHg38,935 chainMm10,935 chainNetHg38,938 chainNetMm10,938 evaSnp,16 evaSnp4,16 evaSnp5,16 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netHg38,935 netMm10,935 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,977 refSeqComposite,1005 rmsk,374 uniprot,1400 replaced evaSnp,476 evaSnp4,494 evaSnp5,494 repmatch tanDups,210 reported evaSnp,238 evaSnp4,238 evaSnp5,238 reporting refSeqComposite,1089 represent chainHg38,132 chainHg38,159 chainHg38,442 chainHg38,447 chainMm10,132 chainMm10,159 chainMm10,442 chainMm10,447 chainNetHg38,135 chainNetHg38,162 chainNetHg38,445 chainNetHg38,450 chainNetMm10,135 chainNetMm10,162 chainNetMm10,445 chainNetMm10,450 est,38 intronEst,50 netHg38,132 netHg38,159 netHg38,442 netHg38,447 netMm10,132 netMm10,159 netMm10,442 netMm10,447 representation evaSnp,490 evaSnp,540 evaSnp4,508 evaSnp4,558 evaSnp5,508 evaSnp5,558 representative refSeqComposite,536 represented evaSnp,128 evaSnp,524 evaSnp,574 evaSnp4,128 evaSnp4,542 evaSnp4,592 evaSnp5,128 evaSnp5,542 evaSnp5,592 gap,69 rmsk,49 representing gap,112 reproducibility uniprot,1645 required refSeqComposite,906 refSeqComposite,920 requirements refSeqComposite,393 requiring intronEst,92 res chainHg38,1101 chainMm10,1101 chainNetHg38,1104 chainNetMm10,1104 ensGene,197 est,760 est,785 est,805 evaSnp,1152 evaSnp4,1197 evaSnp5,1197 intronEst,844 intronEst,869 intronEst,889 microsat,127 mrna,477 mrna,502 mrna,522 netHg38,1101 netMm10,1101 refGene,348 refGene,389 refGene,422 refSeqComposite,1735 refSeqComposite,1776 refSeqComposite,1809 simpleRepeat,87 transMapEnsemblV5,744 transMapEstV5,713 transMapRefSeqV5,713 transMapRnaV5,713 transMapV5,819 uniprot,1999 xenoMrna,552 xenoMrna,577 xenoMrna,597 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 refSeqComposite,1100 rmsk,90 residues uniprot,344 resolution evaSnp,80 evaSnp4,80 evaSnp5,80 resolve uniprot,1357 resolved uniprot,1284 resource evaSnp,1143 evaSnp4,1188 evaSnp5,1188 uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 evaSnp,967 evaSnp4,1008 evaSnp5,1008 refSeqComposite,1306 restricted refSeqComposite,577 result chainHg38,172 chainMm10,172 chainNetHg38,175 chainNetMm10,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netHg38,172 netMm10,172 refSeqComposite,60 tanDups,346 tanDups,396 transMapEnsemblV5,504 transMapEstV5,473 transMapRefSeqV5,473 transMapRnaV5,473 transMapV5,579 uniprot,798 uniprot,1065 uniprot,1170 resulting chainHg38,595 chainMm10,595 chainNetHg38,598 chainNetMm10,598 netHg38,595 netMm10,595 refSeqComposite,284 tanDups,331 transMapEnsemblV5,81 transMapEnsemblV5,334 transMapEnsemblV5,346 transMapEnsemblV5,491 transMapEstV5,50 transMapEstV5,303 transMapEstV5,315 transMapEstV5,460 transMapRefSeqV5,50 transMapRefSeqV5,303 transMapRefSeqV5,315 transMapRefSeqV5,460 transMapRnaV5,50 transMapRnaV5,303 transMapRnaV5,315 transMapRnaV5,460 transMapV5,51 transMapV5,409 transMapV5,421 transMapV5,566 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1098 tanDups,418 tanDups,426 tanDups,463 uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,580 intronEst,661 retroposons rmsk,173 reverse est,455 est,489 est,506 intronEst,536 intronEst,570 intronEst,587 reversed evaSnp,873 evaSnp4,894 evaSnp5,894 review refGene,102 refSeqComposite,609 refSeqComposite,629 refSeqComposite,646 refSeqComposite,677 refSeqComposite,702 xenoRefGene,62 reviewed refGene,112 refSeqComposite,620 refSeqComposite,630 refSeqComposite,636 xenoRefGene,72 reviews refSeqComposite,258 rhead evaSnp,1175 evaSnp4,1220 evaSnp5,1220 rhemac8 evaSnp4,922 evaSnp5,922 riestra uniprot,1972 right refSeqComposite,971 rightmost refSeqComposite,1013 rm evaSnp,1182 evaSnp4,1227 evaSnp5,1227 rna est,101 est,449 intronEst,182 intronEst,530 refGene,31 refGene,279 refGene,325 refSeqComposite,28 refSeqComposite,1085 refSeqComposite,1145 refSeqComposite,1206 refSeqComposite,1247 refSeqComposite,1655 rmsk,186 rmsk,189 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,564 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,564 transMapV5,670 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rna-seq refSeqComposite,74 refSeqComposite,365 rnas ncbiRefSeqPsl,6 refGene,7 refGene,257 refSeqComposite,53 refSeqComposite,438 refSeqComposite,487 refSeqComposite,1225 xenoRefGene,217 robert chainHg38,983 chainMm10,983 chainNetHg38,986 chainNetMm10,986 nestedRepeats,307 netHg38,983 netMm10,983 rmsk,330 role uniprot,309 rolling rmsk,201 rosenbloom evaSnp,1183 evaSnp4,1228 evaSnp5,1228 ross chainHg38,932 chainMm10,932 chainNetHg38,935 chainNetMm10,935 netHg38,932 netMm10,932 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 rsid evaSnp,194 evaSnp,361 evaSnp4,194 evaSnp4,361 evaSnp5,194 evaSnp5,361 run chainHg38,648 chainMm10,648 chainNetHg38,651 chainNetMm10,651 netHg38,648 netMm10,648 refSeqComposite,1605 tanDups,115 windowmaskerSdust,53 runs evaSnp,589 evaSnp4,607 evaSnp5,607 s augustusGene,104 augustusGene,221 augustusGene,319 chainHg38,1051 chainHg38,1068 chainHg38,1081 chainMm10,1051 chainMm10,1068 chainMm10,1081 chainNetHg38,1054 chainNetHg38,1071 chainNetHg38,1084 chainNetMm10,1054 chainNetMm10,1071 chainNetMm10,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 evaSnp,260 evaSnp,822 evaSnp,1104 evaSnp,1110 evaSnp,1134 evaSnp4,260 evaSnp4,843 evaSnp4,1145 evaSnp4,1151 evaSnp4,1179 evaSnp5,260 evaSnp5,843 evaSnp5,1145 evaSnp5,1151 evaSnp5,1179 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netHg38,1051 netHg38,1068 netHg38,1081 netMm10,1051 netMm10,1068 netMm10,1081 refSeqComposite,105 refSeqComposite,318 refSeqComposite,465 refSeqComposite,484 refSeqComposite,1119 refSeqComposite,1204 rmsk,18 rmsk,293 tanDups,118 tanDups,283 transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1450 salzberg genscan,189 same chainHg38,521 chainHg38,536 chainMm10,521 chainMm10,536 chainNetHg38,524 chainNetHg38,539 chainNetMm10,524 chainNetMm10,539 nestedRepeats,143 netHg38,521 netHg38,536 netMm10,521 netMm10,536 refSeqComposite,1217 tanDups,310 tanDups,316 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 xenoMrna,122 xenoMrna,127 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 santa chainHg38,956 chainHg38,1001 chainMm10,956 chainMm10,1001 chainNetHg38,959 chainNetHg38,1004 chainNetMm10,959 chainNetMm10,1004 netHg38,956 netHg38,1001 netMm10,956 netMm10,1001 tanDups,485 tanDups,509 satellite rmsk,184 saunders evaSnp,1125 evaSnp4,1170 evaSnp5,1170 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers est,755 intronEst,839 mrna,472 xenoMrna,547 scaffold gap,147 gold,80 gold,118 scaffolds gap,150 scale HLTOGAannotvHg38v1,363 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainHg38,923 chainHg38,1080 chainMm10,923 chainMm10,1080 chainNetHg38,926 chainNetHg38,1083 chainNetMm10,926 chainNetMm10,1083 netHg38,923 netHg38,1080 netMm10,923 netMm10,1080 sci chainHg38,1066 chainMm10,1066 chainNetHg38,1069 chainNetMm10,1069 netHg38,1066 netMm10,1066 science HLTOGAannotvHg38v1,364 genscan,203 scientific refSeqComposite,281 uniprot,37 scientists est,740 intronEst,824 mrna,457 refGene,330 refSeqComposite,1717 transMapEnsemblV5,697 transMapEstV5,666 transMapRefSeqV5,666 transMapRnaV5,666 transMapV5,772 xenoMrna,532 xenoRefGene,290 score chainHg38,677 chainMm10,677 chainNetHg38,680 chainNetMm10,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netHg38,677 netMm10,677 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainHg38,77 chainHg38,87 chainHg38,656 chainHg38,673 chainHg38,1028 chainMm10,77 chainMm10,87 chainMm10,656 chainMm10,673 chainMm10,1028 chainNetHg38,80 chainNetHg38,90 chainNetHg38,659 chainNetHg38,676 chainNetHg38,1031 chainNetMm10,80 chainNetMm10,90 chainNetMm10,659 chainNetMm10,676 chainNetMm10,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netHg38,77 netHg38,87 netHg38,656 netHg38,673 netHg38,1028 netMm10,77 netMm10,87 netMm10,656 netMm10,673 netMm10,1028 scott chainHg38,922 chainMm10,922 chainNetHg38,925 chainNetMm10,925 netHg38,922 netMm10,922 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 se evaSnp,1120 evaSnp4,1165 evaSnp5,1165 search evaSnp,202 evaSnp4,202 evaSnp5,202 transMapEnsemblV5,798 transMapEstV5,767 transMapRefSeqV5,767 transMapRnaV5,767 transMapV5,873 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 evaSnp,175 evaSnp4,175 evaSnp5,175 searls genscan,191 second xenoMrna,91 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 evaSnp,426 evaSnp4,444 evaSnp5,444 genscan,153 nestedRepeats,67 refSeqComposite,91 refSeqComposite,1650 rmsk,103 uniprot,897 sections chainHg38,803 chainMm10,803 chainNetHg38,806 chainNetMm10,806 netHg38,803 netMm10,803 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 intronEst,122 microsat,101 nestedRepeats,296 nestedRepeats,370 refGene,77 refGene,247 refSeqComposite,88 refSeqComposite,136 refSeqComposite,336 refSeqComposite,541 rmsk,319 rmsk,393 simpleRepeat,63 tanDups,457 transMapEnsemblV5,229 transMapEnsemblV5,571 transMapEstV5,198 transMapEstV5,540 transMapRefSeqV5,198 transMapRefSeqV5,540 transMapRnaV5,198 transMapRnaV5,540 transMapV5,304 transMapV5,646 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,207 seen evaSnp,422 evaSnp4,440 evaSnp5,440 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refGene,200 refSeqComposite,510 refSeqComposite,527 refSeqComposite,531 refSeqComposite,544 refSeqComposite,834 xenoRefGene,160 selected est,293 est,309 est,362 intronEst,374 intronEst,390 intronEst,443 mrna,239 mrna,255 mrna,308 refSeqComposite,159 transMapEnsemblV5,212 transMapEnsemblV5,249 transMapEnsemblV5,260 transMapEnsemblV5,328 transMapEstV5,181 transMapEstV5,218 transMapEstV5,229 transMapEstV5,297 transMapRefSeqV5,181 transMapRefSeqV5,218 transMapRefSeqV5,229 transMapRefSeqV5,297 transMapRnaV5,181 transMapRnaV5,218 transMapRnaV5,229 transMapRnaV5,297 transMapV5,287 transMapV5,324 transMapV5,335 transMapV5,403 uniprot,986 xenoMrna,314 xenoMrna,330 xenoMrna,383 selecting microsat,60 tanDups,417 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 selects tanDups,347 semi-markov augustusGene,117 sensitivity transMapV5,147 sep chainHg38,1071 chainMm10,1071 chainNetHg38,1074 chainNetMm10,1074 nestedRepeats,356 netHg38,1071 netMm10,1071 rmsk,379 separated est,264 evaSnp,362 evaSnp4,362 evaSnp5,362 intronEst,345 mrna,210 xenoMrna,285 separation tanDups,162 tanDups,294 tanDups,301 tanDups,340 tanDups,369 seq unipConflict,1 sequence HLTOGAannotvHg38v1,150 HLTOGAannotvHg38v1,309 augustusGene,32 augustusGene,70 chainHg38,166 chainHg38,292 chainHg38,1031 chainMm10,166 chainMm10,292 chainMm10,1031 chainNetHg38,169 chainNetHg38,295 chainNetHg38,1034 chainNetMm10,169 chainNetMm10,295 chainNetMm10,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 est,18 est,89 est,398 est,407 est,581 est,718 est,730 est,737 evaSnp,98 evaSnp,281 evaSnp,451 evaSnp,464 evaSnp,634 evaSnp,647 evaSnp,782 evaSnp,856 evaSnp,894 evaSnp4,98 evaSnp4,281 evaSnp4,469 evaSnp4,482 evaSnp4,652 evaSnp4,665 evaSnp4,803 evaSnp4,877 evaSnp4,917 evaSnp4,928 evaSnp5,98 evaSnp5,281 evaSnp5,469 evaSnp5,482 evaSnp5,652 evaSnp5,665 evaSnp5,803 evaSnp5,877 evaSnp5,917 evaSnp5,928 gap,54 gold,53 gold,156 gold,161 intronEst,20 intronEst,73 intronEst,170 intronEst,479 intronEst,488 intronEst,662 intronEst,799 intronEst,814 intronEst,821 mrna,344 mrna,434 mrna,447 mrna,454 netHg38,166 netHg38,292 netHg38,1031 netMm10,166 netMm10,292 netMm10,1031 refGene,314 refGene,326 refGene,408 refGene,413 refSeqComposite,651 refSeqComposite,662 refSeqComposite,878 refSeqComposite,978 refSeqComposite,1006 refSeqComposite,1033 refSeqComposite,1045 refSeqComposite,1078 refSeqComposite,1082 refSeqComposite,1087 refSeqComposite,1282 refSeqComposite,1795 refSeqComposite,1800 rmsk,48 rmsk,62 tanDups,23 tanDups,35 tanDups,104 tanDups,128 tanDups,141 tanDups,230 tanDups,242 tanDups,252 tanDups,313 tanDups,360 tandemDups,6 transMapEnsemblV5,128 transMapEnsemblV5,687 transMapEnsemblV5,694 transMapEstV5,97 transMapEstV5,656 transMapEstV5,663 transMapRefSeqV5,97 transMapRefSeqV5,656 transMapRefSeqV5,663 transMapRnaV5,97 transMapRnaV5,656 transMapRnaV5,663 transMapV5,203 transMapV5,762 transMapV5,769 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoMrna,77 xenoMrna,101 xenoMrna,109 xenoMrna,419 xenoMrna,509 xenoMrna,522 xenoMrna,529 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequence-to-gene refSeqComposite,680 sequenced windowmaskerSdust,104 sequences est,29 est,600 est,608 gold,13 intronEst,41 intronEst,681 intronEst,689 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refGene,33 refGene,52 refGene,386 refSeqComposite,30 refSeqComposite,111 refSeqComposite,269 refSeqComposite,285 refSeqComposite,883 refSeqComposite,1093 refSeqComposite,1656 refSeqComposite,1773 rmsk,24 rmsk,32 simpleRepeat,84 tanDups,5 tanDups,63 tanDups,167 tanDups,183 tanDups,257 tanDups,337 tanDups,385 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoMrna,114 xenoRefGene,30 xenoRefGene,345 sequencing chainHg38,885 chainMm10,885 chainNetHg38,888 chainNetMm10,888 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netHg38,885 netMm10,885 tanDups,8 tanDups,72 tandemDups,14 ucscToINSDC,12 ucscToRefSeq,7 server ensGene,144 evaSnp,1006 evaSnp4,1047 evaSnp5,1047 refSeqComposite,1324 refSeqComposite,1330 refSeqComposite,1346 refSeqComposite,1485 refSeqComposite,1600 refSeqComposite,1627 refSeqComposite,1679 refSeqComposite,1705 transMapEnsemblV5,558 transMapEstV5,527 transMapRefSeqV5,527 transMapRnaV5,527 transMapV5,633 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set evaSnp,141 evaSnp4,141 evaSnp5,141 refSeqComposite,160 refSeqComposite,1495 refSeqComposite,1632 refSeqComposite,1695 transMapEnsemblV5,279 transMapEstV5,248 transMapRefSeqV5,248 transMapRnaV5,248 transMapV5,354 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,154 setting refSeqComposite,1037 refSeqComposite,1064 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,742 several HLTOGAannotvHg38v1,274 est,423 intronEst,504 mrna,362 transMapEnsemblV5,137 transMapEstV5,106 transMapRefSeqV5,106 transMapRnaV5,106 transMapV5,212 xenoMrna,437 shade nestedRepeats,194 shaded est,67 mrna,48 nestedRepeats,182 xenoMrna,53 shades nestedRepeats,202 shading intronEst,146 nestedRepeats,240 refGene,97 refSeqComposite,604 rmsk,208 rmsk,239 xenoRefGene,57 sharma HLTOGAannotvHg38v1,342 shen evaSnp,1127 evaSnp4,1172 evaSnp5,1172 shift refSeqComposite,958 shifted refSeqComposite,967 refSeqComposite,1014 short evaSnp,5 evaSnp4,5 evaSnp5,5 refSeqComposite,925 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,961 shotgun gold,151 should est,329 est,633 intronEst,410 intronEst,714 mrna,275 xenoMrna,350 show evaSnp,273 evaSnp4,273 evaSnp5,273 intronEst,29 intronEst,62 refGene,163 refSeqComposite,156 refSeqComposite,787 refSeqComposite,902 refSeqComposite,916 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,123 showing refSeqComposite,956 shown HLTOGAannotvHg38v1,136 chainHg38,41 chainHg38,54 chainMm10,41 chainMm10,54 chainNetHg38,44 chainNetHg38,57 chainNetMm10,44 chainNetMm10,57 est,147 evaSnp,63 evaSnp,344 evaSnp,358 evaSnp4,63 evaSnp4,344 evaSnp4,358 evaSnp5,63 evaSnp5,344 evaSnp5,358 gold,101 intronEst,228 microsat,48 mrna,93 netHg38,41 netHg38,54 netMm10,41 netMm10,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 xenoMrna,168 shows augustusGene,15 augustusGene,108 chainHg38,15 chainHg38,62 chainHg38,263 chainMm10,15 chainMm10,62 chainMm10,263 chainNetHg38,18 chainNetHg38,65 chainNetHg38,266 chainNetMm10,18 chainNetMm10,65 chainNetMm10,266 est,13 evaSnp,305 evaSnp4,305 evaSnp5,305 gap,10 gc5BaseBw,16 genscan,13 gold,11 intronEst,15 mrna,14 nestedRepeats,17 nestedRepeats,81 netHg38,15 netHg38,62 netHg38,263 netMm10,15 netMm10,62 netMm10,263 refGene,20 refSeqComposite,18 refSeqComposite,1000 refSeqComposite,1011 uniprot,14 uniprot,484 xenoRefGene,13 side est,596 gap,87 intronEst,677 tanDups,26 tanDups,107 siepel transMapEnsemblV5,711 transMapEstV5,680 transMapRefSeqV5,680 transMapRnaV5,680 transMapV5,786 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 signify evaSnp,642 evaSnp4,660 evaSnp5,660 signs intronEst,30 silva evaSnp,1129 evaSnp4,1174 evaSnp5,1174 similar evaSnp,583 evaSnp4,601 evaSnp5,601 nestedRepeats,199 tanDups,154 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 tanDups,383 simultaneously chainHg38,99 chainMm10,99 chainNetHg38,102 chainNetMm10,102 netHg38,99 netMm10,99 since chainHg38,570 chainMm10,570 chainNetHg38,573 chainNetMm10,573 netHg38,570 netMm10,570 uniprot,1383 sine rmsk,157 single chainHg38,126 chainHg38,135 chainHg38,619 chainHg38,624 chainMm10,126 chainMm10,135 chainMm10,619 chainMm10,624 chainNetHg38,129 chainNetHg38,138 chainNetHg38,622 chainNetHg38,627 chainNetMm10,129 chainNetMm10,138 chainNetMm10,622 chainNetMm10,627 est,630 est,682 evaSnp,23 evaSnp,65 evaSnp,104 evaSnp,111 evaSnp,121 evaSnp,470 evaSnp4,23 evaSnp4,65 evaSnp4,104 evaSnp4,111 evaSnp4,121 evaSnp4,488 evaSnp5,23 evaSnp5,65 evaSnp5,104 evaSnp5,111 evaSnp5,121 evaSnp5,488 intronEst,711 intronEst,763 mrna,398 nestedRepeats,178 netHg38,126 netHg38,135 netHg38,619 netHg38,624 netMm10,126 netMm10,135 netMm10,619 netMm10,624 refGene,278 refSeqComposite,530 refSeqComposite,1246 tanDups,121 transMapEnsemblV5,477 transMapEstV5,446 transMapRefSeqV5,446 transMapRnaV5,446 transMapV5,552 uniprot,141 xenoMrna,472 xenoRefGene,238 single-lined chainHg38,206 chainMm10,206 chainNetHg38,209 chainNetMm10,209 netHg38,206 netMm10,206 single-read est,28 intronEst,40 site evaSnp,435 evaSnp,741 evaSnp4,453 evaSnp4,762 evaSnp5,453 evaSnp5,762 genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,271 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size evaSnp,161 evaSnp4,161 evaSnp5,161 gap,138 gap,156 tanDups,228 tanDups,311 tanDups,356 sized tanDups,413 tanDups,424 tanDups,442 sizes tanDups,348 skepticism est,638 intronEst,719 skip refSeqComposite,1030 skipped refSeqComposite,1043 sm refGene,363 refSeqComposite,1750 xenoRefGene,322 small evaSnp,27 evaSnp4,27 evaSnp5,27 refSeqComposite,933 smaller tanDups,339 smallsize chainHg38,703 chainMm10,703 chainNetHg38,706 chainNetMm10,706 netHg38,703 netMm10,703 smit chainHg38,940 chainHg38,1084 chainMm10,940 chainMm10,1084 chainNetHg38,943 chainNetHg38,1087 chainNetMm10,943 chainNetMm10,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netHg38,940 netHg38,1084 netMm10,940 netMm10,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snp evaSnp,2 evaSnp,86 evaSnp4,2 evaSnp4,86 evaSnp5,2 evaSnp5,86 snps evaSnp,922 evaSnp,932 evaSnp4,963 evaSnp4,973 evaSnp5,963 evaSnp5,973 snrna rmsk,192 so chainHg38,434 chainMm10,434 chainNetHg38,437 chainNetMm10,437 evaSnp,283 evaSnp,453 evaSnp,785 evaSnp4,283 evaSnp4,471 evaSnp4,806 evaSnp5,283 evaSnp5,471 evaSnp5,806 netHg38,434 netMm10,434 refSeqComposite,301 refSeqComposite,1611 uniprot,1135 uniprot,1430 society refSeqComposite,1075 soft-masked rmsk,305 software HLTOGAannotvHg38v1,327 nestedRepeats,255 refSeqComposite,376 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 est,155 est,552 est,568 est,670 evaSnp,859 evaSnp4,880 evaSnp5,880 intronEst,236 intronEst,633 intronEst,649 intronEst,751 mrna,101 nestedRepeats,207 refSeqComposite,656 refSeqComposite,704 rmsk,105 rmsk,268 transMapEnsemblV5,297 transMapEnsemblV5,307 transMapEstV5,266 transMapEstV5,276 transMapRefSeqV5,266 transMapRefSeqV5,276 transMapRnaV5,266 transMapRnaV5,276 transMapV5,372 transMapV5,382 uniprot,318 xenoMrna,176 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainHg38,772 chainMm10,772 chainNetHg38,775 chainNetMm10,775 netHg38,772 netMm10,772 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 evaSnp,242 evaSnp,1035 evaSnp,1049 evaSnp4,242 evaSnp4,1076 evaSnp4,1090 evaSnp5,242 evaSnp5,1076 evaSnp5,1090 refSeqComposite,1512 transMapEnsemblV5,152 transMapEnsemblV5,323 transMapEnsemblV5,340 transMapEnsemblV5,404 transMapEnsemblV5,429 transMapEnsemblV5,620 transMapEnsemblV5,634 transMapEstV5,121 transMapEstV5,292 transMapEstV5,309 transMapEstV5,373 transMapEstV5,398 transMapEstV5,589 transMapEstV5,603 transMapRefSeqV5,121 transMapRefSeqV5,292 transMapRefSeqV5,309 transMapRefSeqV5,373 transMapRefSeqV5,398 transMapRefSeqV5,589 transMapRefSeqV5,603 transMapRnaV5,121 transMapRnaV5,292 transMapRnaV5,309 transMapRnaV5,373 transMapRnaV5,398 transMapRnaV5,589 transMapRnaV5,603 transMapV5,227 transMapV5,398 transMapV5,415 transMapV5,479 transMapV5,504 transMapV5,695 transMapV5,709 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space est,267 intronEst,348 mrna,213 uniprot,1990 xenoMrna,288 spaces evaSnp,364 evaSnp4,364 evaSnp5,364 gold,99 spacing tanDups,317 span chainHg38,393 chainMm10,393 chainNetHg38,396 chainNetMm10,396 netHg38,393 netMm10,393 refSeqComposite,1002 spans evaSnp,133 evaSnp4,133 evaSnp5,133 specialized simpleRepeat,29 species HLTOGAannotvHg38v1,52 HLTOGAannotvHg38v1,127 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainHg38,116 chainHg38,169 chainHg38,188 chainHg38,891 chainMm10,116 chainMm10,169 chainMm10,188 chainMm10,891 chainNetHg38,119 chainNetHg38,172 chainNetHg38,191 chainNetHg38,894 chainNetMm10,119 chainNetMm10,172 chainNetMm10,191 chainNetMm10,894 evaSnp,1149 evaSnp4,1194 evaSnp5,1194 netHg38,116 netHg38,169 netHg38,188 netHg38,891 netMm10,116 netMm10,169 netMm10,188 netMm10,891 transMapEnsemblV5,32 transMapEnsemblV5,269 transMapEstV5,30 transMapEstV5,238 transMapRefSeqV5,30 transMapRefSeqV5,238 transMapRnaV5,30 transMapRnaV5,238 transMapV5,29 transMapV5,78 transMapV5,114 transMapV5,344 species-specific augustusGene,156 specific est,194 evaSnp,418 evaSnp4,436 evaSnp5,436 gap,33 gold,35 intronEst,275 mrna,140 simpleRepeat,53 xenoMrna,215 specification gap,59 gold,58 specify refSeqComposite,1110 speed refSeqComposite,1438 speir evaSnp,1173 evaSnp4,1218 evaSnp5,1218 splice augustusGene,53 evaSnp,434 evaSnp,740 evaSnp4,452 evaSnp4,761 evaSnp5,452 evaSnp5,761 genscan,156 refSeqComposite,270 uniprot,144 splice_acceptor_variant evaSnp,749 evaSnp4,770 evaSnp5,770 splice_donor_variant evaSnp,750 evaSnp4,771 evaSnp5,771 splice_region_variant evaSnp,751 evaSnp4,772 evaSnp5,772 spliced intronEst,1 intronEst,8 intronEst,58 transMapEnsemblV5,175 transMapEstV5,17 transMapEstV5,144 transMapRefSeqV5,144 transMapRnaV5,144 transMapV5,250 splicing augustusGene,123 genscan,33 genscan,186 intronEst,32 intronEst,93 split chainHg38,574 chainMm10,574 chainNetHg38,577 chainNetMm10,577 netHg38,574 netMm10,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,421 transMapEstV5,390 transMapRefSeqV5,390 transMapRnaV5,390 transMapV5,496 srprna rmsk,194 staff refSeqComposite,639 refSeqComposite,690 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 est,560 evaSnp,1081 evaSnp4,1122 evaSnp5,1122 intronEst,641 refSeqComposite,1554 tanDups,248 transMapEnsemblV5,668 transMapEstV5,637 transMapRefSeqV5,637 transMapRnaV5,637 transMapV5,743 uniprot,125 uniprot,209 uniprot,1821 starting tanDups,409 starts tanDups,438 state chainHg38,917 chainHg38,1020 chainMm10,917 chainMm10,1020 chainNetHg38,920 chainNetHg38,1023 chainNetMm10,920 chainNetMm10,1023 netHg38,917 netHg38,1020 netMm10,917 netMm10,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 evaSnp,1085 evaSnp4,1126 evaSnp5,1126 refSeqComposite,1558 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,720 transMapEstV5,689 transMapRefSeqV5,689 transMapRnaV5,689 transMapV5,795 stop_gained evaSnp,752 evaSnp4,773 evaSnp5,773 stop_lost evaSnp,753 evaSnp4,774 evaSnp5,774 stop_retained_variant evaSnp,760 evaSnp4,781 evaSnp5,781 storage chainHg38,974 chainMm10,974 chainNetHg38,977 chainNetMm10,977 netHg38,974 netMm10,974 stored evaSnp,994 evaSnp4,1035 evaSnp5,1035 refSeqComposite,1474 transMapEnsemblV5,541 transMapEstV5,510 transMapRefSeqV5,510 transMapRnaV5,510 transMapV5,616 uniprot,1733 strain tanDups,71 strand chainHg38,246 chainMm10,246 chainNetHg38,249 chainNetMm10,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 est,74 intronEst,155 nestedRepeats,144 nestedRepeats,155 netHg38,246 netMm10,246 xenoMrna,60 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,119 strong HLTOGAannotvHg38v1,253 HLTOGAannotvHg38v1,282 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainHg38,287 chainMm10,287 chainNetHg38,290 chainNetMm10,290 netHg38,287 netMm10,287 subcellular uniprot,553 subject refSeqComposite,674 refSeqComposite,699 submit refGene,58 refSeqComposite,117 submitted est,732 intronEst,816 mrna,449 transMapEnsemblV5,689 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 xenoMrna,524 submodel augustusGene,331 subsections chainHg38,638 chainMm10,638 chainNetHg38,641 chainNetMm10,641 netHg38,638 netMm10,638 subsequent transMapEnsemblV5,439 transMapEstV5,408 transMapRefSeqV5,408 transMapRnaV5,408 transMapV5,514 subset est,133 intronEst,214 microsat,54 mrna,79 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,211 refSeqComposite,341 refSeqComposite,511 refSeqComposite,516 refSeqComposite,547 refSeqComposite,549 refSeqComposite,579 refSeqComposite,791 tanDups,47 transMapEnsemblV5,206 transMapEstV5,175 transMapRefSeqV5,175 transMapRnaV5,175 transMapV5,281 xenoMrna,154 subsets evaSnp,274 evaSnp4,274 evaSnp5,274 substantial chainHg38,165 chainMm10,165 chainNetHg38,168 chainNetMm10,168 netHg38,165 netMm10,165 substituted evaSnp,621 evaSnp4,639 evaSnp5,639 substitution evaSnp,467 evaSnp4,485 evaSnp5,485 substitutions evaSnp,831 evaSnp4,852 evaSnp5,852 subtrack refSeqComposite,746 refSeqComposite,758 uniprot,411 subtracks chainHg38,29 chainHg38,36 chainMm10,29 chainMm10,36 chainNetHg38,32 chainNetHg38,39 chainNetMm10,32 chainNetMm10,39 netHg38,29 netHg38,36 netMm10,29 netMm10,36 refSeqComposite,34 refSeqComposite,162 refSeqComposite,186 refSeqComposite,1394 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,178 successful est,590 intronEst,671 such chainHg38,852 chainMm10,852 chainNetHg38,855 chainNetMm10,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netHg38,852 netMm10,852 refSeqComposite,412 uniprot,306 suffix transMapEnsemblV5,398 transMapEstV5,367 transMapRefSeqV5,367 transMapRnaV5,367 transMapV5,473 uniprot,1255 suggestions refGene,57 refSeqComposite,116 suitable uniprot,1868 suppl augustusGene,336 supported gap,92 sure refSeqComposite,1096 uniprot,1407 survey tanDups,36 tanDups,155 tandemDups,7 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 switched evaSnp,170 evaSnp4,170 evaSnp5,170 symp chainHg38,1034 chainMm10,1034 chainNetHg38,1037 chainNetMm10,1037 netHg38,1034 netMm10,1034 syn chainHg38,517 chainMm10,517 chainNetHg38,520 chainNetMm10,520 netHg38,517 netMm10,517 transMapEnsemblV5,253 transMapEstV5,222 transMapRefSeqV5,222 transMapRnaV5,222 transMapV5,328 synonymous evaSnp,437 evaSnp,756 evaSnp4,455 evaSnp4,777 evaSnp5,455 evaSnp5,777 synonymous_variant evaSnp,759 evaSnp4,780 evaSnp5,780 syntenic chainHg38,281 chainHg38,859 chainMm10,281 chainMm10,859 chainNetHg38,284 chainNetHg38,862 chainNetMm10,284 chainNetMm10,862 netHg38,281 netHg38,859 netMm10,281 netMm10,859 transMapEnsemblV5,235 transMapEnsemblV5,514 transMapEstV5,204 transMapEstV5,483 transMapRefSeqV5,204 transMapRefSeqV5,483 transMapRnaV5,204 transMapRnaV5,483 transMapV5,310 transMapV5,589 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,765 transMapEstV5,45 transMapEstV5,734 transMapRefSeqV5,45 transMapRefSeqV5,734 transMapRnaV5,45 transMapRnaV5,734 transMapV5,44 transMapV5,840 synteny chainHg38,32 chainMm10,32 chainNetHg38,35 chainNetMm10,35 netHg38,32 netMm10,32 transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 synteny-filtered transMapV5,82 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainHg38,78 chainMm10,78 chainNetHg38,81 chainNetMm10,81 evaSnp,1045 evaSnp4,1086 evaSnp5,1086 netHg38,78 netMm10,78 refSeqComposite,1463 refSeqComposite,1522 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1353 uniprot,1784 systems chainHg38,88 chainMm10,88 chainNetHg38,91 chainNetMm10,91 netHg38,88 netMm10,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 evaSnp,571 evaSnp,1116 evaSnp4,589 evaSnp4,1161 evaSnp5,589 evaSnp5,1161 refGene,403 refSeqComposite,1790 tanDups,279 xenoRefGene,362 t-123-31-11491 chainHg38,671 chainMm10,671 chainNetHg38,674 chainNetMm10,674 netHg38,671 netMm10,671 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 est,219 est,222 est,241 evaSnp,951 evaSnp4,992 evaSnp5,992 intronEst,300 intronEst,303 intronEst,322 mrna,165 mrna,168 mrna,187 refSeqComposite,1176 refSeqComposite,1308 refSeqComposite,1353 refSeqComposite,1570 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1720 windowmaskerSdust,85 xenoMrna,240 xenoMrna,243 xenoMrna,262 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,81 refSeqComposite,1314 refSeqComposite,1399 refSeqComposite,1428 tanDups,460 uniprot,1301 tablesize chainHg38,701 chainMm10,701 chainNetHg38,704 chainNetMm10,704 netHg38,701 netMm10,701 tags est,19 intronEst,21 tail est,501 intronEst,582 taken est,472 intronEst,553 refGene,27 refSeqComposite,24 xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 tanDups,1 tanDups,30 tanDups,51 tanDups,149 tanDups,254 tanDups,466 tandemDups,1 transMapEnsemblV5,506 transMapEstV5,475 transMapRefSeqV5,475 transMapRnaV5,475 transMapV5,581 tandemrepeat evaSnp,585 evaSnp4,603 evaSnp5,603 targeted transMapEnsemblV5,734 transMapEstV5,703 transMapRefSeqV5,703 transMapRnaV5,703 transMapV5,809 targeting refSeqComposite,580 task est,161 intronEst,242 mrna,107 xenoMrna,182 tatusova refGene,402 refSeqComposite,1789 xenoRefGene,361 tblastn uniprot,1476 techniques est,566 intronEst,647 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term est,168 evaSnp,284 evaSnp,639 evaSnp4,284 evaSnp4,657 evaSnp5,284 evaSnp5,657 intronEst,249 mrna,114 xenoMrna,189 terminal rmsk,167 terminology refSeqComposite,1071 terms est,212 est,258 evaSnp,334 evaSnp,355 evaSnp,466 evaSnp,787 evaSnp4,334 evaSnp4,355 evaSnp4,484 evaSnp4,808 evaSnp5,334 evaSnp5,355 evaSnp5,484 evaSnp5,808 intronEst,293 intronEst,339 mrna,158 mrna,204 xenoMrna,233 xenoMrna,279 text est,175 est,215 est,255 intronEst,256 intronEst,296 intronEst,336 mrna,121 mrna,161 mrna,201 uniprot,1763 xenoMrna,196 xenoMrna,236 xenoMrna,276 tgap chainHg38,729 chainMm10,729 chainNetHg38,732 chainNetMm10,732 netHg38,729 netMm10,729 th transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 than chainHg38,83 chainHg38,506 chainMm10,83 chainMm10,506 chainNetHg38,86 chainNetHg38,509 chainNetMm10,86 chainNetMm10,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 est,280 est,573 evaSnp,152 evaSnp,164 evaSnp,604 evaSnp,617 evaSnp4,152 evaSnp4,164 evaSnp4,622 evaSnp4,635 evaSnp5,152 evaSnp5,164 evaSnp5,622 evaSnp5,635 intronEst,361 intronEst,654 mrna,226 nestedRepeats,213 nestedRepeats,271 netHg38,83 netHg38,506 netMm10,83 netMm10,506 refGene,272 refSeqComposite,1240 transMapEnsemblV5,223 transMapEnsemblV5,373 transMapEstV5,192 transMapEstV5,342 transMapRefSeqV5,192 transMapRefSeqV5,342 transMapRnaV5,192 transMapRnaV5,342 transMapV5,107 transMapV5,148 transMapV5,298 transMapV5,448 xenoMrna,27 xenoMrna,301 xenoRefGene,22 xenoRefGene,232 thank ensGene,150 tanDups,469 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that HLTOGAannotvHg38v1,28 HLTOGAannotvHg38v1,77 HLTOGAannotvHg38v1,284 chainHg38,20 chainHg38,45 chainHg38,79 chainHg38,139 chainHg38,163 chainHg38,365 chainHg38,392 chainHg38,414 chainHg38,566 chainHg38,822 chainHg38,833 chainMm10,20 chainMm10,45 chainMm10,79 chainMm10,139 chainMm10,163 chainMm10,365 chainMm10,392 chainMm10,414 chainMm10,566 chainMm10,822 chainMm10,833 chainNetHg38,23 chainNetHg38,48 chainNetHg38,82 chainNetHg38,142 chainNetHg38,166 chainNetHg38,368 chainNetHg38,395 chainNetHg38,417 chainNetHg38,569 chainNetHg38,825 chainNetHg38,836 chainNetMm10,23 chainNetMm10,48 chainNetMm10,82 chainNetMm10,142 chainNetMm10,166 chainNetMm10,368 chainNetMm10,395 chainNetMm10,417 chainNetMm10,569 chainNetMm10,825 chainNetMm10,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 est,36 est,63 est,117 est,224 est,248 est,296 est,311 est,328 est,352 est,370 est,387 est,402 est,655 est,676 evaSnp,132 evaSnp,222 evaSnp,515 evaSnp,565 evaSnp,587 evaSnp,600 evaSnp,653 evaSnp,999 evaSnp4,132 evaSnp4,222 evaSnp4,533 evaSnp4,583 evaSnp4,605 evaSnp4,618 evaSnp4,671 evaSnp4,1040 evaSnp5,132 evaSnp5,222 evaSnp5,533 evaSnp5,583 evaSnp5,605 evaSnp5,618 evaSnp5,671 evaSnp5,1040 genscan,141 gold,74 gold,144 intronEst,5 intronEst,28 intronEst,48 intronEst,198 intronEst,305 intronEst,329 intronEst,377 intronEst,392 intronEst,409 intronEst,433 intronEst,451 intronEst,468 intronEst,483 intronEst,736 intronEst,757 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netHg38,20 netHg38,45 netHg38,79 netHg38,139 netHg38,163 netHg38,365 netHg38,392 netHg38,414 netHg38,566 netHg38,822 netHg38,833 netMm10,20 netMm10,45 netMm10,79 netMm10,139 netMm10,163 netMm10,365 netMm10,392 netMm10,414 netMm10,566 netMm10,822 netMm10,833 refGene,186 refSeqComposite,150 refSeqComposite,170 refSeqComposite,215 refSeqComposite,345 refSeqComposite,388 refSeqComposite,820 refSeqComposite,930 refSeqComposite,1021 refSeqComposite,1029 refSeqComposite,1054 refSeqComposite,1097 refSeqComposite,1617 rmsk,42 rmsk,259 tanDups,373 tanDups,399 transMapEnsemblV5,117 transMapEnsemblV5,193 transMapEnsemblV5,497 transMapEstV5,86 transMapEstV5,162 transMapEstV5,466 transMapRefSeqV5,86 transMapRefSeqV5,162 transMapRefSeqV5,466 transMapRnaV5,86 transMapRnaV5,162 transMapRnaV5,466 transMapV5,192 transMapV5,268 transMapV5,572 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoMrna,49 xenoMrna,138 xenoMrna,245 xenoMrna,269 xenoMrna,317 xenoMrna,332 xenoMrna,349 xenoMrna,373 xenoMrna,391 xenoMrna,408 xenoRefGene,146 the HLTOGAannotvHg38v1,67 HLTOGAannotvHg38v1,108 HLTOGAannotvHg38v1,120 HLTOGAannotvHg38v1,125 HLTOGAannotvHg38v1,147 HLTOGAannotvHg38v1,169 HLTOGAannotvHg38v1,174 HLTOGAannotvHg38v1,177 HLTOGAannotvHg38v1,181 HLTOGAannotvHg38v1,195 HLTOGAannotvHg38v1,202 HLTOGAannotvHg38v1,216 HLTOGAannotvHg38v1,221 HLTOGAannotvHg38v1,224 HLTOGAannotvHg38v1,228 HLTOGAannotvHg38v1,243 HLTOGAannotvHg38v1,247 HLTOGAannotvHg38v1,257 HLTOGAannotvHg38v1,285 HLTOGAannotvHg38v1,302 HLTOGAannotvHg38v1,307 HLTOGAannotvHg38v1,320 HLTOGAannotvHg38v1,325 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainHg38,18 chainHg38,37 chainHg38,59 chainHg38,71 chainHg38,117 chainHg38,130 chainHg38,147 chainHg38,154 chainHg38,200 chainHg38,203 chainHg38,229 chainHg38,239 chainHg38,244 chainHg38,252 chainHg38,260 chainHg38,264 chainHg38,273 chainHg38,290 chainHg38,299 chainHg38,313 chainHg38,328 chainHg38,334 chainHg38,337 chainHg38,352 chainHg38,358 chainHg38,362 chainHg38,382 chainHg38,388 chainHg38,402 chainHg38,420 chainHg38,437 chainHg38,440 chainHg38,445 chainHg38,458 chainHg38,471 chainHg38,473 chainHg38,480 chainHg38,483 chainHg38,490 chainHg38,496 chainHg38,509 chainHg38,520 chainHg38,524 chainHg38,527 chainHg38,535 chainHg38,539 chainHg38,545 chainHg38,556 chainHg38,559 chainHg38,571 chainHg38,578 chainHg38,580 chainHg38,588 chainHg38,594 chainHg38,603 chainHg38,606 chainHg38,636 chainHg38,641 chainHg38,650 chainHg38,654 chainHg38,661 chainHg38,684 chainHg38,692 chainHg38,762 chainHg38,766 chainHg38,774 chainHg38,778 chainHg38,782 chainHg38,790 chainHg38,835 chainHg38,845 chainHg38,864 chainHg38,867 chainHg38,879 chainHg38,903 chainHg38,945 chainHg38,951 chainHg38,969 chainHg38,976 chainHg38,988 chainHg38,997 chainHg38,1018 chainHg38,1058 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,117 chainMm10,130 chainMm10,147 chainMm10,154 chainMm10,200 chainMm10,203 chainMm10,229 chainMm10,239 chainMm10,244 chainMm10,252 chainMm10,260 chainMm10,264 chainMm10,273 chainMm10,290 chainMm10,299 chainMm10,313 chainMm10,328 chainMm10,334 chainMm10,337 chainMm10,352 chainMm10,358 chainMm10,362 chainMm10,382 chainMm10,388 chainMm10,402 chainMm10,420 chainMm10,437 chainMm10,440 chainMm10,445 chainMm10,458 chainMm10,471 chainMm10,473 chainMm10,480 chainMm10,483 chainMm10,490 chainMm10,496 chainMm10,509 chainMm10,520 chainMm10,524 chainMm10,527 chainMm10,535 chainMm10,539 chainMm10,545 chainMm10,556 chainMm10,559 chainMm10,571 chainMm10,578 chainMm10,580 chainMm10,588 chainMm10,594 chainMm10,603 chainMm10,606 chainMm10,636 chainMm10,641 chainMm10,650 chainMm10,654 chainMm10,661 chainMm10,684 chainMm10,692 chainMm10,762 chainMm10,766 chainMm10,774 chainMm10,778 chainMm10,782 chainMm10,790 chainMm10,835 chainMm10,845 chainMm10,864 chainMm10,867 chainMm10,879 chainMm10,903 chainMm10,945 chainMm10,951 chainMm10,969 chainMm10,976 chainMm10,988 chainMm10,997 chainMm10,1018 chainMm10,1058 chainNetHg38,21 chainNetHg38,40 chainNetHg38,62 chainNetHg38,74 chainNetHg38,120 chainNetHg38,133 chainNetHg38,150 chainNetHg38,157 chainNetHg38,203 chainNetHg38,206 chainNetHg38,232 chainNetHg38,242 chainNetHg38,247 chainNetHg38,255 chainNetHg38,263 chainNetHg38,267 chainNetHg38,276 chainNetHg38,293 chainNetHg38,302 chainNetHg38,316 chainNetHg38,331 chainNetHg38,337 chainNetHg38,340 chainNetHg38,355 chainNetHg38,361 chainNetHg38,365 chainNetHg38,385 chainNetHg38,391 chainNetHg38,405 chainNetHg38,423 chainNetHg38,440 chainNetHg38,443 chainNetHg38,448 chainNetHg38,461 chainNetHg38,474 chainNetHg38,476 chainNetHg38,483 chainNetHg38,486 chainNetHg38,493 chainNetHg38,499 chainNetHg38,512 chainNetHg38,523 chainNetHg38,527 chainNetHg38,530 chainNetHg38,538 chainNetHg38,542 chainNetHg38,548 chainNetHg38,559 chainNetHg38,562 chainNetHg38,574 chainNetHg38,581 chainNetHg38,583 chainNetHg38,591 chainNetHg38,597 chainNetHg38,606 chainNetHg38,609 chainNetHg38,639 chainNetHg38,644 chainNetHg38,653 chainNetHg38,657 chainNetHg38,664 chainNetHg38,687 chainNetHg38,695 chainNetHg38,765 chainNetHg38,769 chainNetHg38,777 chainNetHg38,781 chainNetHg38,785 chainNetHg38,793 chainNetHg38,838 chainNetHg38,848 chainNetHg38,867 chainNetHg38,870 chainNetHg38,882 chainNetHg38,906 chainNetHg38,948 chainNetHg38,954 chainNetHg38,972 chainNetHg38,979 chainNetHg38,991 chainNetHg38,1000 chainNetHg38,1021 chainNetHg38,1061 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,120 chainNetMm10,133 chainNetMm10,150 chainNetMm10,157 chainNetMm10,203 chainNetMm10,206 chainNetMm10,232 chainNetMm10,242 chainNetMm10,247 chainNetMm10,255 chainNetMm10,263 chainNetMm10,267 chainNetMm10,276 chainNetMm10,293 chainNetMm10,302 chainNetMm10,316 chainNetMm10,331 chainNetMm10,337 chainNetMm10,340 chainNetMm10,355 chainNetMm10,361 chainNetMm10,365 chainNetMm10,385 chainNetMm10,391 chainNetMm10,405 chainNetMm10,423 chainNetMm10,440 chainNetMm10,443 chainNetMm10,448 chainNetMm10,461 chainNetMm10,474 chainNetMm10,476 chainNetMm10,483 chainNetMm10,486 chainNetMm10,493 chainNetMm10,499 chainNetMm10,512 chainNetMm10,523 chainNetMm10,527 chainNetMm10,530 chainNetMm10,538 chainNetMm10,542 chainNetMm10,548 chainNetMm10,559 chainNetMm10,562 chainNetMm10,574 chainNetMm10,581 chainNetMm10,583 chainNetMm10,591 chainNetMm10,597 chainNetMm10,606 chainNetMm10,609 chainNetMm10,639 chainNetMm10,644 chainNetMm10,653 chainNetMm10,657 chainNetMm10,664 chainNetMm10,687 chainNetMm10,695 chainNetMm10,765 chainNetMm10,769 chainNetMm10,777 chainNetMm10,781 chainNetMm10,785 chainNetMm10,793 chainNetMm10,838 chainNetMm10,848 chainNetMm10,867 chainNetMm10,870 chainNetMm10,882 chainNetMm10,906 chainNetMm10,948 chainNetMm10,954 chainNetMm10,972 chainNetMm10,979 chainNetMm10,991 chainNetMm10,1000 chainNetMm10,1021 chainNetMm10,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 est,24 est,50 est,61 est,73 est,77 est,80 est,83 est,86 est,95 est,100 est,108 est,123 est,127 est,137 est,149 est,159 est,164 est,174 est,179 est,186 est,197 est,200 est,203 est,208 est,218 est,221 est,227 est,237 est,244 est,253 est,274 est,284 est,316 est,323 est,337 est,346 est,354 est,363 est,372 est,389 est,396 est,405 est,416 est,437 est,460 est,474 est,488 est,499 est,505 est,515 est,519 est,530 est,534 est,541 est,550 est,554 est,564 est,584 est,610 est,616 est,650 est,656 est,688 est,691 est,707 est,716 est,734 est,800 evaSnp,33 evaSnp,41 evaSnp,45 evaSnp,58 evaSnp,74 evaSnp,81 evaSnp,85 evaSnp,90 evaSnp,93 evaSnp,96 evaSnp,117 evaSnp,138 evaSnp,156 evaSnp,159 evaSnp,167 evaSnp,191 evaSnp,196 evaSnp,200 evaSnp,205 evaSnp,213 evaSnp,227 evaSnp,232 evaSnp,235 evaSnp,241 evaSnp,244 evaSnp,246 evaSnp,253 evaSnp,269 evaSnp,276 evaSnp,293 evaSnp,306 evaSnp,310 evaSnp,314 evaSnp,319 evaSnp,327 evaSnp,346 evaSnp,386 evaSnp,405 evaSnp,414 evaSnp,424 evaSnp,462 evaSnp,473 evaSnp,489 evaSnp,492 evaSnp,502 evaSnp,507 evaSnp,539 evaSnp,542 evaSnp,552 evaSnp,557 evaSnp,588 evaSnp,664 evaSnp,676 evaSnp,692 evaSnp,696 evaSnp,706 evaSnp,714 evaSnp,721 evaSnp,734 evaSnp,791 evaSnp,795 evaSnp,811 evaSnp,848 evaSnp,854 evaSnp,861 evaSnp,864 evaSnp,880 evaSnp,883 evaSnp,890 evaSnp,892 evaSnp,899 evaSnp,905 evaSnp,939 evaSnp,943 evaSnp,950 evaSnp,954 evaSnp,960 evaSnp,1007 evaSnp,1018 evaSnp,1034 evaSnp,1057 evaSnp,1092 evaSnp,1137 evaSnp4,33 evaSnp4,41 evaSnp4,45 evaSnp4,58 evaSnp4,74 evaSnp4,81 evaSnp4,85 evaSnp4,90 evaSnp4,93 evaSnp4,96 evaSnp4,117 evaSnp4,138 evaSnp4,156 evaSnp4,159 evaSnp4,167 evaSnp4,191 evaSnp4,196 evaSnp4,200 evaSnp4,205 evaSnp4,213 evaSnp4,227 evaSnp4,232 evaSnp4,235 evaSnp4,241 evaSnp4,244 evaSnp4,246 evaSnp4,253 evaSnp4,269 evaSnp4,276 evaSnp4,293 evaSnp4,306 evaSnp4,310 evaSnp4,314 evaSnp4,319 evaSnp4,327 evaSnp4,346 evaSnp4,386 evaSnp4,391 evaSnp4,411 evaSnp4,423 evaSnp4,432 evaSnp4,442 evaSnp4,480 evaSnp4,491 evaSnp4,507 evaSnp4,510 evaSnp4,520 evaSnp4,525 evaSnp4,557 evaSnp4,560 evaSnp4,570 evaSnp4,575 evaSnp4,606 evaSnp4,682 evaSnp4,694 evaSnp4,704 evaSnp4,708 evaSnp4,718 evaSnp4,740 evaSnp4,755 evaSnp4,812 evaSnp4,816 evaSnp4,832 evaSnp4,869 evaSnp4,875 evaSnp4,882 evaSnp4,885 evaSnp4,902 evaSnp4,905 evaSnp4,913 evaSnp4,915 evaSnp4,926 evaSnp4,940 evaSnp4,946 evaSnp4,980 evaSnp4,984 evaSnp4,991 evaSnp4,995 evaSnp4,1001 evaSnp4,1048 evaSnp4,1059 evaSnp4,1075 evaSnp4,1098 evaSnp4,1133 evaSnp4,1182 evaSnp5,33 evaSnp5,41 evaSnp5,45 evaSnp5,58 evaSnp5,74 evaSnp5,81 evaSnp5,85 evaSnp5,90 evaSnp5,93 evaSnp5,96 evaSnp5,117 evaSnp5,138 evaSnp5,156 evaSnp5,159 evaSnp5,167 evaSnp5,191 evaSnp5,196 evaSnp5,200 evaSnp5,205 evaSnp5,213 evaSnp5,227 evaSnp5,232 evaSnp5,235 evaSnp5,241 evaSnp5,244 evaSnp5,246 evaSnp5,253 evaSnp5,269 evaSnp5,276 evaSnp5,293 evaSnp5,306 evaSnp5,310 evaSnp5,314 evaSnp5,319 evaSnp5,327 evaSnp5,346 evaSnp5,386 evaSnp5,391 evaSnp5,411 evaSnp5,423 evaSnp5,432 evaSnp5,442 evaSnp5,480 evaSnp5,491 evaSnp5,507 evaSnp5,510 evaSnp5,520 evaSnp5,525 evaSnp5,557 evaSnp5,560 evaSnp5,570 evaSnp5,575 evaSnp5,606 evaSnp5,682 evaSnp5,694 evaSnp5,704 evaSnp5,708 evaSnp5,718 evaSnp5,740 evaSnp5,755 evaSnp5,812 evaSnp5,816 evaSnp5,832 evaSnp5,869 evaSnp5,875 evaSnp5,882 evaSnp5,885 evaSnp5,902 evaSnp5,905 evaSnp5,913 evaSnp5,915 evaSnp5,926 evaSnp5,940 evaSnp5,946 evaSnp5,980 evaSnp5,984 evaSnp5,991 evaSnp5,995 evaSnp5,1001 evaSnp5,1048 evaSnp5,1059 evaSnp5,1075 evaSnp5,1098 evaSnp5,1133 evaSnp5,1182 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gap,118 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 intronEst,26 intronEst,36 intronEst,71 intronEst,94 intronEst,99 intronEst,106 intronEst,123 intronEst,134 intronEst,154 intronEst,158 intronEst,161 intronEst,164 intronEst,167 intronEst,176 intronEst,181 intronEst,189 intronEst,204 intronEst,208 intronEst,218 intronEst,230 intronEst,240 intronEst,245 intronEst,255 intronEst,260 intronEst,267 intronEst,278 intronEst,281 intronEst,284 intronEst,289 intronEst,299 intronEst,302 intronEst,308 intronEst,318 intronEst,325 intronEst,334 intronEst,355 intronEst,365 intronEst,397 intronEst,404 intronEst,418 intronEst,427 intronEst,435 intronEst,444 intronEst,453 intronEst,470 intronEst,477 intronEst,486 intronEst,497 intronEst,518 intronEst,541 intronEst,555 intronEst,569 intronEst,580 intronEst,586 intronEst,596 intronEst,600 intronEst,611 intronEst,615 intronEst,622 intronEst,631 intronEst,635 intronEst,645 intronEst,665 intronEst,691 intronEst,697 intronEst,731 intronEst,737 intronEst,769 intronEst,772 intronEst,788 intronEst,797 intronEst,818 intronEst,884 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 ncbiRefSeqGenomicDiff,9 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netHg38,18 netHg38,37 netHg38,59 netHg38,71 netHg38,117 netHg38,130 netHg38,147 netHg38,154 netHg38,200 netHg38,203 netHg38,229 netHg38,239 netHg38,244 netHg38,252 netHg38,260 netHg38,264 netHg38,273 netHg38,290 netHg38,299 netHg38,313 netHg38,328 netHg38,334 netHg38,337 netHg38,352 netHg38,358 netHg38,362 netHg38,382 netHg38,388 netHg38,402 netHg38,420 netHg38,437 netHg38,440 netHg38,445 netHg38,458 netHg38,471 netHg38,473 netHg38,480 netHg38,483 netHg38,490 netHg38,496 netHg38,509 netHg38,520 netHg38,524 netHg38,527 netHg38,535 netHg38,539 netHg38,545 netHg38,556 netHg38,559 netHg38,571 netHg38,578 netHg38,580 netHg38,588 netHg38,594 netHg38,603 netHg38,606 netHg38,636 netHg38,641 netHg38,650 netHg38,654 netHg38,661 netHg38,684 netHg38,692 netHg38,762 netHg38,766 netHg38,774 netHg38,778 netHg38,782 netHg38,790 netHg38,835 netHg38,845 netHg38,864 netHg38,867 netHg38,879 netHg38,903 netHg38,945 netHg38,951 netHg38,969 netHg38,976 netHg38,988 netHg38,997 netHg38,1018 netHg38,1058 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,117 netMm10,130 netMm10,147 netMm10,154 netMm10,200 netMm10,203 netMm10,229 netMm10,239 netMm10,244 netMm10,252 netMm10,260 netMm10,264 netMm10,273 netMm10,290 netMm10,299 netMm10,313 netMm10,328 netMm10,334 netMm10,337 netMm10,352 netMm10,358 netMm10,362 netMm10,382 netMm10,388 netMm10,402 netMm10,420 netMm10,437 netMm10,440 netMm10,445 netMm10,458 netMm10,471 netMm10,473 netMm10,480 netMm10,483 netMm10,490 netMm10,496 netMm10,509 netMm10,520 netMm10,524 netMm10,527 netMm10,535 netMm10,539 netMm10,545 netMm10,556 netMm10,559 netMm10,571 netMm10,578 netMm10,580 netMm10,588 netMm10,594 netMm10,603 netMm10,606 netMm10,636 netMm10,641 netMm10,650 netMm10,654 netMm10,661 netMm10,684 netMm10,692 netMm10,762 netMm10,766 netMm10,774 netMm10,778 netMm10,782 netMm10,790 netMm10,835 netMm10,845 netMm10,864 netMm10,867 netMm10,879 netMm10,903 netMm10,945 netMm10,951 netMm10,969 netMm10,976 netMm10,988 netMm10,997 netMm10,1018 netMm10,1058 refGene,16 refGene,29 refGene,36 refGene,46 refGene,73 refGene,88 refGene,95 refGene,99 refGene,103 refGene,114 refGene,129 refGene,132 refGene,135 refGene,149 refGene,155 refGene,160 refGene,165 refGene,173 refGene,201 refGene,206 refGene,221 refGene,236 refGene,249 refGene,261 refGene,284 refGene,287 refGene,303 refGene,312 refGene,335 refGene,343 refSeqComposite,12 refSeqComposite,26 refSeqComposite,42 refSeqComposite,51 refSeqComposite,55 refSeqComposite,65 refSeqComposite,89 refSeqComposite,97 refSeqComposite,132 refSeqComposite,164 refSeqComposite,168 refSeqComposite,184 refSeqComposite,239 refSeqComposite,280 refSeqComposite,283 refSeqComposite,289 refSeqComposite,306 refSeqComposite,312 refSeqComposite,324 refSeqComposite,332 refSeqComposite,368 refSeqComposite,372 refSeqComposite,385 refSeqComposite,392 refSeqComposite,397 refSeqComposite,401 refSeqComposite,440 refSeqComposite,445 refSeqComposite,449 refSeqComposite,461 refSeqComposite,494 refSeqComposite,503 refSeqComposite,525 refSeqComposite,556 refSeqComposite,567 refSeqComposite,575 refSeqComposite,583 refSeqComposite,595 refSeqComposite,602 refSeqComposite,606 refSeqComposite,610 refSeqComposite,631 refSeqComposite,644 refSeqComposite,654 refSeqComposite,667 refSeqComposite,678 refSeqComposite,692 refSeqComposite,707 refSeqComposite,712 refSeqComposite,728 refSeqComposite,732 refSeqComposite,735 refSeqComposite,741 refSeqComposite,748 refSeqComposite,753 refSeqComposite,757 refSeqComposite,770 refSeqComposite,776 refSeqComposite,784 refSeqComposite,796 refSeqComposite,807 refSeqComposite,835 refSeqComposite,840 refSeqComposite,855 refSeqComposite,864 refSeqComposite,875 refSeqComposite,880 refSeqComposite,884 refSeqComposite,903 refSeqComposite,909 refSeqComposite,917 refSeqComposite,923 refSeqComposite,973 refSeqComposite,997 refSeqComposite,1001 refSeqComposite,1004 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1047 refSeqComposite,1059 refSeqComposite,1106 refSeqComposite,1111 refSeqComposite,1117 refSeqComposite,1126 refSeqComposite,1140 refSeqComposite,1155 refSeqComposite,1172 refSeqComposite,1181 refSeqComposite,1186 refSeqComposite,1194 refSeqComposite,1208 refSeqComposite,1216 refSeqComposite,1229 refSeqComposite,1252 refSeqComposite,1255 refSeqComposite,1271 refSeqComposite,1280 refSeqComposite,1287 refSeqComposite,1305 refSeqComposite,1313 refSeqComposite,1334 refSeqComposite,1341 refSeqComposite,1362 refSeqComposite,1365 refSeqComposite,1382 refSeqComposite,1392 refSeqComposite,1421 refSeqComposite,1444 refSeqComposite,1460 refSeqComposite,1465 refSeqComposite,1468 refSeqComposite,1493 refSeqComposite,1511 refSeqComposite,1524 refSeqComposite,1542 refSeqComposite,1567 refSeqComposite,1572 refSeqComposite,1576 refSeqComposite,1588 refSeqComposite,1593 refSeqComposite,1597 refSeqComposite,1601 refSeqComposite,1607 refSeqComposite,1639 refSeqComposite,1644 refSeqComposite,1647 refSeqComposite,1654 refSeqComposite,1664 refSeqComposite,1693 refSeqComposite,1722 refSeqComposite,1730 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 tanDups,41 tanDups,49 tanDups,69 tanDups,77 tanDups,94 tanDups,123 tanDups,130 tanDups,136 tanDups,139 tanDups,143 tanDups,146 tanDups,148 tanDups,157 tanDups,161 tanDups,179 tanDups,202 tanDups,215 tanDups,232 tanDups,237 tanDups,240 tanDups,247 tanDups,250 tanDups,253 tanDups,261 tanDups,269 tanDups,309 tanDups,315 tanDups,319 tanDups,324 tanDups,330 tanDups,342 tanDups,355 tanDups,358 tanDups,375 tanDups,406 tanDups,436 tanDups,478 tanDups,483 tanDups,496 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,98 transMapEnsemblV5,119 transMapEnsemblV5,126 transMapEnsemblV5,161 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,208 transMapEnsemblV5,251 transMapEnsemblV5,255 transMapEnsemblV5,259 transMapEnsemblV5,271 transMapEnsemblV5,277 transMapEnsemblV5,294 transMapEnsemblV5,302 transMapEnsemblV5,309 transMapEnsemblV5,311 transMapEnsemblV5,322 transMapEnsemblV5,327 transMapEnsemblV5,331 transMapEnsemblV5,339 transMapEnsemblV5,343 transMapEnsemblV5,345 transMapEnsemblV5,376 transMapEnsemblV5,403 transMapEnsemblV5,413 transMapEnsemblV5,416 transMapEnsemblV5,438 transMapEnsemblV5,447 transMapEnsemblV5,460 transMapEnsemblV5,470 transMapEnsemblV5,482 transMapEnsemblV5,503 transMapEnsemblV5,517 transMapEnsemblV5,528 transMapEnsemblV5,532 transMapEnsemblV5,538 transMapEnsemblV5,577 transMapEnsemblV5,585 transMapEnsemblV5,603 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,691 transMapEnsemblV5,703 transMapEnsemblV5,805 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,67 transMapEstV5,88 transMapEstV5,95 transMapEstV5,130 transMapEstV5,147 transMapEstV5,170 transMapEstV5,177 transMapEstV5,220 transMapEstV5,224 transMapEstV5,228 transMapEstV5,240 transMapEstV5,246 transMapEstV5,263 transMapEstV5,271 transMapEstV5,278 transMapEstV5,280 transMapEstV5,291 transMapEstV5,296 transMapEstV5,300 transMapEstV5,308 transMapEstV5,312 transMapEstV5,314 transMapEstV5,345 transMapEstV5,372 transMapEstV5,382 transMapEstV5,385 transMapEstV5,407 transMapEstV5,416 transMapEstV5,429 transMapEstV5,439 transMapEstV5,451 transMapEstV5,472 transMapEstV5,486 transMapEstV5,497 transMapEstV5,501 transMapEstV5,507 transMapEstV5,546 transMapEstV5,554 transMapEstV5,572 transMapEstV5,588 transMapEstV5,611 transMapEstV5,660 transMapEstV5,672 transMapEstV5,774 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,67 transMapRefSeqV5,88 transMapRefSeqV5,95 transMapRefSeqV5,130 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,177 transMapRefSeqV5,220 transMapRefSeqV5,224 transMapRefSeqV5,228 transMapRefSeqV5,240 transMapRefSeqV5,246 transMapRefSeqV5,263 transMapRefSeqV5,271 transMapRefSeqV5,278 transMapRefSeqV5,280 transMapRefSeqV5,291 transMapRefSeqV5,296 transMapRefSeqV5,300 transMapRefSeqV5,308 transMapRefSeqV5,312 transMapRefSeqV5,314 transMapRefSeqV5,345 transMapRefSeqV5,372 transMapRefSeqV5,382 transMapRefSeqV5,385 transMapRefSeqV5,407 transMapRefSeqV5,416 transMapRefSeqV5,429 transMapRefSeqV5,439 transMapRefSeqV5,451 transMapRefSeqV5,472 transMapRefSeqV5,486 transMapRefSeqV5,497 transMapRefSeqV5,501 transMapRefSeqV5,507 transMapRefSeqV5,546 transMapRefSeqV5,554 transMapRefSeqV5,572 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,660 transMapRefSeqV5,672 transMapRefSeqV5,774 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,67 transMapRnaV5,88 transMapRnaV5,95 transMapRnaV5,130 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,177 transMapRnaV5,220 transMapRnaV5,224 transMapRnaV5,228 transMapRnaV5,240 transMapRnaV5,246 transMapRnaV5,263 transMapRnaV5,271 transMapRnaV5,278 transMapRnaV5,280 transMapRnaV5,291 transMapRnaV5,296 transMapRnaV5,300 transMapRnaV5,308 transMapRnaV5,312 transMapRnaV5,314 transMapRnaV5,345 transMapRnaV5,372 transMapRnaV5,382 transMapRnaV5,385 transMapRnaV5,407 transMapRnaV5,416 transMapRnaV5,429 transMapRnaV5,439 transMapRnaV5,451 transMapRnaV5,472 transMapRnaV5,486 transMapRnaV5,497 transMapRnaV5,501 transMapRnaV5,507 transMapRnaV5,546 transMapRnaV5,554 transMapRnaV5,572 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,660 transMapRnaV5,672 transMapRnaV5,774 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,91 transMapV5,98 transMapV5,103 transMapV5,121 transMapV5,126 transMapV5,132 transMapV5,136 transMapV5,173 transMapV5,194 transMapV5,201 transMapV5,236 transMapV5,253 transMapV5,276 transMapV5,283 transMapV5,326 transMapV5,330 transMapV5,334 transMapV5,346 transMapV5,352 transMapV5,369 transMapV5,377 transMapV5,384 transMapV5,386 transMapV5,397 transMapV5,402 transMapV5,406 transMapV5,414 transMapV5,418 transMapV5,420 transMapV5,451 transMapV5,478 transMapV5,488 transMapV5,491 transMapV5,513 transMapV5,522 transMapV5,535 transMapV5,545 transMapV5,557 transMapV5,578 transMapV5,592 transMapV5,603 transMapV5,607 transMapV5,613 transMapV5,652 transMapV5,660 transMapV5,678 transMapV5,694 transMapV5,717 transMapV5,766 transMapV5,778 transMapV5,880 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoMrna,36 xenoMrna,47 xenoMrna,59 xenoMrna,69 xenoMrna,72 xenoMrna,75 xenoMrna,82 xenoMrna,90 xenoMrna,94 xenoMrna,97 xenoMrna,103 xenoMrna,121 xenoMrna,126 xenoMrna,129 xenoMrna,144 xenoMrna,148 xenoMrna,158 xenoMrna,170 xenoMrna,180 xenoMrna,185 xenoMrna,195 xenoMrna,200 xenoMrna,207 xenoMrna,218 xenoMrna,221 xenoMrna,224 xenoMrna,229 xenoMrna,239 xenoMrna,242 xenoMrna,248 xenoMrna,258 xenoMrna,265 xenoMrna,274 xenoMrna,295 xenoMrna,305 xenoMrna,337 xenoMrna,344 xenoMrna,358 xenoMrna,367 xenoMrna,375 xenoMrna,384 xenoMrna,393 xenoMrna,410 xenoMrna,417 xenoMrna,428 xenoMrna,451 xenoMrna,459 xenoMrna,464 xenoMrna,478 xenoMrna,481 xenoMrna,498 xenoMrna,507 xenoMrna,513 xenoMrna,526 xenoMrna,592 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their evaSnp,730 evaSnp4,751 evaSnp5,751 nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainHg38,797 chainMm10,797 chainNetHg38,800 chainNetMm10,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netHg38,797 netMm10,797 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainHg38,647 chainHg38,786 chainHg38,871 chainMm10,647 chainMm10,786 chainMm10,871 chainNetHg38,650 chainNetHg38,789 chainNetHg38,874 chainNetMm10,650 chainNetMm10,789 chainNetMm10,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 evaSnp,726 evaSnp,794 evaSnp,802 evaSnp4,399 evaSnp4,747 evaSnp4,815 evaSnp4,823 evaSnp5,399 evaSnp5,747 evaSnp5,815 evaSnp5,823 nestedRepeats,232 netHg38,647 netHg38,786 netHg38,871 netMm10,647 netMm10,786 netMm10,871 tanDups,341 tanDups,416 transMapV5,129 uniprot,1083 uniprot,1516 there HLTOGAannotvHg38v1,237 HLTOGAannotvHg38v1,280 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 est,619 evaSnp,149 evaSnp,601 evaSnp4,149 evaSnp4,619 evaSnp5,149 evaSnp5,619 intronEst,700 tanDups,10 transMapEnsemblV5,450 transMapEstV5,419 transMapRefSeqV5,419 transMapRnaV5,419 transMapV5,525 uniprot,705 uniprot,1092 xenoMrna,115 therefore evaSnp,857 evaSnp4,878 evaSnp5,878 gold,122 refSeqComposite,1630 tanDups,225 uniprot,968 uniprot,1145 these HLTOGAannotvHg38v1,158 HLTOGAannotvHg38v1,187 HLTOGAannotvHg38v1,261 augustusGene,95 augustusGene,190 chainHg38,52 chainHg38,100 chainHg38,407 chainHg38,659 chainMm10,52 chainMm10,100 chainMm10,407 chainMm10,659 chainNetHg38,55 chainNetHg38,103 chainNetHg38,410 chainNetHg38,662 chainNetMm10,55 chainNetMm10,103 chainNetMm10,410 chainNetMm10,662 ensGene,10 ensGene,154 est,587 evaSnp,817 evaSnp,902 evaSnp4,838 evaSnp4,943 evaSnp5,838 evaSnp5,943 intronEst,668 microsat,24 nestedRepeats,262 nestedRepeats,266 netHg38,52 netHg38,100 netHg38,407 netHg38,659 netMm10,52 netMm10,100 netMm10,407 netMm10,659 refSeqComposite,321 refSeqComposite,331 refSeqComposite,793 refSeqComposite,1291 refSeqComposite,1427 rmsk,235 simpleRepeat,33 tanDups,165 transMapEnsemblV5,457 transMapEnsemblV5,466 transMapEnsemblV5,521 transMapEnsemblV5,582 transMapEstV5,426 transMapEstV5,435 transMapEstV5,490 transMapEstV5,551 transMapRefSeqV5,426 transMapRefSeqV5,435 transMapRefSeqV5,490 transMapRefSeqV5,551 transMapRnaV5,426 transMapRnaV5,435 transMapRnaV5,490 transMapRnaV5,551 transMapV5,12 transMapV5,532 transMapV5,541 transMapV5,596 transMapV5,657 uniprot,99 uniprot,130 uniprot,1160 thesis chainHg38,1017 chainMm10,1017 chainNetHg38,1020 chainNetMm10,1020 netHg38,1017 netMm10,1017 they chainHg38,324 chainMm10,324 chainNetHg38,327 chainNetMm10,327 gap,131 netHg38,324 netMm10,324 refSeqComposite,247 refSeqComposite,291 refSeqComposite,356 refSeqComposite,418 tanDups,307 tanDups,379 uniprot,179 thibaud-nissen refGene,364 refSeqComposite,1751 xenoRefGene,323 thick chainHg38,43 chainMm10,43 chainNetHg38,46 chainNetMm10,46 netHg38,43 netMm10,43 refSeqComposite,993 refSeqComposite,1009 thin refSeqComposite,991 refSeqComposite,998 this HLTOGAannotvHg38v1,315 augustusGene,13 augustusGene,106 augustusGene,224 chainHg38,13 chainHg38,170 chainHg38,295 chainHg38,394 chainHg38,690 chainHg38,812 chainMm10,13 chainMm10,170 chainMm10,295 chainMm10,394 chainMm10,690 chainMm10,812 chainNetHg38,16 chainNetHg38,173 chainNetHg38,298 chainNetHg38,397 chainNetHg38,693 chainNetHg38,815 chainNetMm10,16 chainNetMm10,173 chainNetMm10,298 chainNetMm10,397 chainNetMm10,693 chainNetMm10,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 est,11 est,47 est,112 est,139 est,375 est,412 est,592 est,628 est,641 est,722 evaSnp,18 evaSnp,991 evaSnp,1010 evaSnp,1087 evaSnp4,18 evaSnp4,1032 evaSnp4,1051 evaSnp4,1128 evaSnp5,18 evaSnp5,1032 evaSnp5,1051 evaSnp5,1128 gap,8 gap,36 gap,44 gap,74 gap,115 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 intronEst,13 intronEst,131 intronEst,193 intronEst,220 intronEst,456 intronEst,493 intronEst,673 intronEst,709 intronEst,722 intronEst,803 intronEst,806 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netHg38,13 netHg38,170 netHg38,295 netHg38,394 netHg38,690 netHg38,812 netMm10,13 netMm10,170 netMm10,295 netMm10,394 netMm10,690 netMm10,812 refGene,39 refGene,85 refGene,123 refGene,178 refGene,217 refGene,253 refGene,318 refSeqComposite,57 refSeqComposite,144 refSeqComposite,497 refSeqComposite,561 refSeqComposite,722 refSeqComposite,812 refSeqComposite,851 refSeqComposite,1385 refSeqComposite,1433 refSeqComposite,1621 refSeqComposite,1707 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 tanDups,15 tanDups,54 tanDups,74 tanDups,82 tanDups,321 tanDups,387 tanDups,395 tanDups,404 tanDups,491 tanDups,501 transMapEnsemblV5,15 transMapEnsemblV5,95 transMapEnsemblV5,105 transMapEnsemblV5,133 transMapEnsemblV5,286 transMapEnsemblV5,674 transMapEstV5,13 transMapEstV5,64 transMapEstV5,74 transMapEstV5,102 transMapEstV5,255 transMapEstV5,643 transMapRefSeqV5,14 transMapRefSeqV5,64 transMapRefSeqV5,74 transMapRefSeqV5,102 transMapRefSeqV5,255 transMapRefSeqV5,643 transMapRnaV5,14 transMapRnaV5,64 transMapRnaV5,74 transMapRnaV5,102 transMapRnaV5,255 transMapRnaV5,643 transMapV5,170 transMapV5,180 transMapV5,208 transMapV5,361 transMapV5,749 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoMrna,11 xenoMrna,33 xenoMrna,63 xenoMrna,133 xenoMrna,160 xenoMrna,396 xenoMrna,424 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those est,368 est,401 intronEst,449 intronEst,482 microsat,62 mrna,314 nestedRepeats,272 refGene,266 refSeqComposite,218 refSeqComposite,347 refSeqComposite,1234 uniprot,729 xenoMrna,389 xenoMrna,488 xenoRefGene,226 thousands chainHg38,250 chainMm10,250 chainNetHg38,253 chainNetMm10,253 netHg38,250 netMm10,250 three uniprot,1227 three-step uniprot,989 through evaSnp,695 evaSnp4,707 evaSnp5,707 gap,108 nestedRepeats,97 refGene,128 refSeqComposite,727 refSeqComposite,1320 refSeqComposite,1358 rmsk,309 transMapEnsemblV5,527 transMapEstV5,496 transMapRefSeqV5,496 transMapRnaV5,496 transMapV5,602 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,88 thus HLTOGAannotvHg38v1,279 tanDups,45 tick evaSnp,66 evaSnp,105 evaSnp4,66 evaSnp4,105 evaSnp5,66 evaSnp5,105 time chainHg38,795 chainMm10,795 chainNetHg38,798 chainNetMm10,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netHg38,795 netMm10,795 tanDups,405 tissue est,204 est,239 est,254 intronEst,285 intronEst,320 intronEst,335 mrna,150 mrna,185 mrna,200 xenoMrna,225 xenoMrna,260 xenoMrna,275 tissues est,247 intronEst,328 mrna,193 xenoMrna,268 to HLTOGAannotvHg38v1,18 HLTOGAannotvHg38v1,90 HLTOGAannotvHg38v1,99 HLTOGAannotvHg38v1,106 HLTOGAannotvHg38v1,208 HLTOGAannotvHg38v1,255 HLTOGAannotvHg38v1,289 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainHg38,23 chainHg38,70 chainHg38,143 chainHg38,211 chainHg38,223 chainHg38,315 chainHg38,326 chainHg38,331 chainHg38,343 chainHg38,349 chainHg38,372 chainHg38,453 chainHg38,467 chainHg38,551 chainHg38,652 chainHg38,788 chainHg38,800 chainHg38,840 chainHg38,863 chainHg38,873 chainMm10,23 chainMm10,70 chainMm10,143 chainMm10,211 chainMm10,223 chainMm10,315 chainMm10,326 chainMm10,331 chainMm10,343 chainMm10,349 chainMm10,372 chainMm10,453 chainMm10,467 chainMm10,551 chainMm10,652 chainMm10,788 chainMm10,800 chainMm10,840 chainMm10,863 chainMm10,873 chainNetHg38,26 chainNetHg38,73 chainNetHg38,146 chainNetHg38,214 chainNetHg38,226 chainNetHg38,318 chainNetHg38,329 chainNetHg38,334 chainNetHg38,346 chainNetHg38,352 chainNetHg38,375 chainNetHg38,456 chainNetHg38,470 chainNetHg38,554 chainNetHg38,655 chainNetHg38,791 chainNetHg38,803 chainNetHg38,843 chainNetHg38,866 chainNetHg38,876 chainNetMm10,26 chainNetMm10,73 chainNetMm10,146 chainNetMm10,214 chainNetMm10,226 chainNetMm10,318 chainNetMm10,329 chainNetMm10,334 chainNetMm10,346 chainNetMm10,352 chainNetMm10,375 chainNetMm10,456 chainNetMm10,470 chainNetMm10,554 chainNetMm10,655 chainNetMm10,791 chainNetMm10,803 chainNetMm10,843 chainNetMm10,866 chainNetMm10,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 est,94 est,121 est,158 est,162 est,177 est,184 est,188 est,206 est,226 est,233 est,332 est,381 est,391 est,415 est,436 est,445 est,514 est,579 est,639 est,733 evaSnp,89 evaSnp,142 evaSnp,145 evaSnp,171 evaSnp,180 evaSnp,272 evaSnp,313 evaSnp,375 evaSnp,404 evaSnp,413 evaSnp,495 evaSnp,545 evaSnp,584 evaSnp,641 evaSnp,651 evaSnp,675 evaSnp,683 evaSnp,700 evaSnp,712 evaSnp,729 evaSnp,790 evaSnp,799 evaSnp,917 evaSnp,920 evaSnp,930 evaSnp,971 evaSnp,1063 evaSnp4,89 evaSnp4,142 evaSnp4,145 evaSnp4,171 evaSnp4,180 evaSnp4,272 evaSnp4,313 evaSnp4,375 evaSnp4,422 evaSnp4,431 evaSnp4,513 evaSnp4,563 evaSnp4,602 evaSnp4,659 evaSnp4,669 evaSnp4,693 evaSnp4,701 evaSnp4,712 evaSnp4,750 evaSnp4,811 evaSnp4,820 evaSnp4,933 evaSnp4,958 evaSnp4,961 evaSnp4,971 evaSnp4,1012 evaSnp4,1104 evaSnp5,89 evaSnp5,142 evaSnp5,145 evaSnp5,171 evaSnp5,180 evaSnp5,272 evaSnp5,313 evaSnp5,375 evaSnp5,422 evaSnp5,431 evaSnp5,513 evaSnp5,563 evaSnp5,602 evaSnp5,659 evaSnp5,669 evaSnp5,693 evaSnp5,701 evaSnp5,712 evaSnp5,750 evaSnp5,811 evaSnp5,820 evaSnp5,933 evaSnp5,958 evaSnp5,961 evaSnp5,971 evaSnp5,1012 evaSnp5,1104 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 intronEst,55 intronEst,175 intronEst,202 intronEst,239 intronEst,243 intronEst,258 intronEst,265 intronEst,269 intronEst,287 intronEst,307 intronEst,314 intronEst,413 intronEst,462 intronEst,472 intronEst,496 intronEst,517 intronEst,526 intronEst,595 intronEst,660 intronEst,720 intronEst,817 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netHg38,23 netHg38,70 netHg38,143 netHg38,211 netHg38,223 netHg38,315 netHg38,326 netHg38,331 netHg38,343 netHg38,349 netHg38,372 netHg38,453 netHg38,467 netHg38,551 netHg38,652 netHg38,788 netHg38,800 netHg38,840 netHg38,863 netHg38,873 netMm10,23 netMm10,70 netMm10,143 netMm10,211 netMm10,223 netMm10,315 netMm10,326 netMm10,331 netMm10,343 netMm10,349 netMm10,372 netMm10,453 netMm10,467 netMm10,551 netMm10,652 netMm10,788 netMm10,800 netMm10,840 netMm10,863 netMm10,873 refGene,55 refGene,153 refGene,189 refGene,196 refGene,220 refGene,246 refSeqComposite,54 refSeqComposite,114 refSeqComposite,155 refSeqComposite,167 refSeqComposite,173 refSeqComposite,305 refSeqComposite,308 refSeqComposite,323 refSeqComposite,367 refSeqComposite,439 refSeqComposite,493 refSeqComposite,675 refSeqComposite,700 refSeqComposite,739 refSeqComposite,752 refSeqComposite,774 refSeqComposite,823 refSeqComposite,830 refSeqComposite,854 refSeqComposite,901 refSeqComposite,907 refSeqComposite,915 refSeqComposite,921 refSeqComposite,934 refSeqComposite,976 refSeqComposite,1025 refSeqComposite,1058 refSeqComposite,1094 refSeqComposite,1105 refSeqComposite,1171 refSeqComposite,1437 refSeqComposite,1531 refSeqComposite,1584 refSeqComposite,1683 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 tanDups,174 tanDups,198 tanDups,297 tanDups,381 tanDups,393 tanDups,471 transMapEnsemblV5,111 transMapEnsemblV5,121 transMapEnsemblV5,177 transMapEnsemblV5,200 transMapEnsemblV5,258 transMapEnsemblV5,291 transMapEnsemblV5,299 transMapEnsemblV5,316 transMapEnsemblV5,330 transMapEnsemblV5,342 transMapEnsemblV5,381 transMapEnsemblV5,426 transMapEnsemblV5,436 transMapEnsemblV5,469 transMapEnsemblV5,475 transMapEnsemblV5,488 transMapEnsemblV5,648 transMapEnsemblV5,690 transMapEnsemblV5,769 transMapEstV5,80 transMapEstV5,90 transMapEstV5,146 transMapEstV5,169 transMapEstV5,227 transMapEstV5,260 transMapEstV5,268 transMapEstV5,285 transMapEstV5,299 transMapEstV5,311 transMapEstV5,350 transMapEstV5,395 transMapEstV5,405 transMapEstV5,438 transMapEstV5,444 transMapEstV5,457 transMapEstV5,617 transMapEstV5,659 transMapEstV5,738 transMapRefSeqV5,80 transMapRefSeqV5,90 transMapRefSeqV5,146 transMapRefSeqV5,169 transMapRefSeqV5,227 transMapRefSeqV5,260 transMapRefSeqV5,268 transMapRefSeqV5,285 transMapRefSeqV5,299 transMapRefSeqV5,311 transMapRefSeqV5,350 transMapRefSeqV5,395 transMapRefSeqV5,405 transMapRefSeqV5,438 transMapRefSeqV5,444 transMapRefSeqV5,457 transMapRefSeqV5,617 transMapRefSeqV5,659 transMapRefSeqV5,738 transMapRnaV5,80 transMapRnaV5,90 transMapRnaV5,146 transMapRnaV5,169 transMapRnaV5,227 transMapRnaV5,260 transMapRnaV5,268 transMapRnaV5,285 transMapRnaV5,299 transMapRnaV5,311 transMapRnaV5,350 transMapRnaV5,395 transMapRnaV5,405 transMapRnaV5,438 transMapRnaV5,444 transMapRnaV5,457 transMapRnaV5,617 transMapRnaV5,659 transMapRnaV5,738 transMapV5,79 transMapV5,89 transMapV5,120 transMapV5,131 transMapV5,154 transMapV5,186 transMapV5,196 transMapV5,252 transMapV5,275 transMapV5,333 transMapV5,366 transMapV5,374 transMapV5,391 transMapV5,405 transMapV5,417 transMapV5,456 transMapV5,501 transMapV5,511 transMapV5,544 transMapV5,550 transMapV5,563 transMapV5,723 transMapV5,765 transMapV5,844 ucscToINSDC,22 ucscToRefSeq,17 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoMrna,87 xenoMrna,142 xenoMrna,179 xenoMrna,183 xenoMrna,198 xenoMrna,205 xenoMrna,209 xenoMrna,227 xenoMrna,247 xenoMrna,254 xenoMrna,353 xenoMrna,402 xenoMrna,412 xenoMrna,427 xenoMrna,450 xenoMrna,525 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 toga HLTOGAannotvHg38v1,1 HLTOGAannotvHg38v1,4 HLTOGAannotvHg38v1,16 HLTOGAannotvHg38v1,44 HLTOGAannotvHg38v1,72 HLTOGAannotvHg38v1,326 HLTOGAannotvHg38v1,333 together chainHg38,123 chainMm10,123 chainNetHg38,126 chainNetMm10,126 netHg38,123 netMm10,123 tolerate chainHg38,92 chainMm10,92 chainNetHg38,95 chainNetMm10,95 netHg38,92 netMm10,92 tolerated uniprot,1257 too refSeqComposite,932 tanDups,447 tool HLTOGAannotvHg38v1,17 est,803 evaSnp,1027 evaSnp,1058 evaSnp4,1068 evaSnp4,1099 evaSnp5,1068 evaSnp5,1099 intronEst,887 mrna,520 refGene,346 refSeqComposite,1504 refSeqComposite,1733 transMapEnsemblV5,612 transMapEnsemblV5,643 transMapEstV5,581 transMapEstV5,612 transMapRefSeqV5,581 transMapRefSeqV5,612 transMapRnaV5,581 transMapRnaV5,612 transMapV5,687 transMapV5,718 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoMrna,595 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainHg38,508 chainMm10,508 chainNetHg38,511 chainNetMm10,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netHg38,508 netMm10,508 refGene,133 refSeqComposite,733 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,93 top-level chainHg38,383 chainHg38,403 chainMm10,383 chainMm10,403 chainNetHg38,386 chainNetHg38,406 chainNetMm10,386 chainNetMm10,406 netHg38,383 netHg38,403 netMm10,383 netMm10,403 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainHg38,14 chainHg38,58 chainHg38,61 chainHg38,119 chainHg38,259 chainHg38,262 chainHg38,310 chainHg38,345 chainHg38,377 chainHg38,564 chainHg38,691 chainHg38,754 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,119 chainMm10,259 chainMm10,262 chainMm10,310 chainMm10,345 chainMm10,377 chainMm10,564 chainMm10,691 chainMm10,754 chainNetHg38,17 chainNetHg38,61 chainNetHg38,64 chainNetHg38,122 chainNetHg38,262 chainNetHg38,265 chainNetHg38,313 chainNetHg38,348 chainNetHg38,380 chainNetHg38,567 chainNetHg38,694 chainNetHg38,757 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,122 chainNetMm10,262 chainNetMm10,265 chainNetMm10,313 chainNetMm10,348 chainNetMm10,380 chainNetMm10,567 chainNetMm10,694 chainNetMm10,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 est,12 est,48 est,113 est,138 est,150 est,376 est,642 est,723 evaSnp,19 evaSnp,75 evaSnp,270 evaSnp,398 evaSnp,1011 evaSnp,1088 evaSnp4,19 evaSnp4,75 evaSnp4,270 evaSnp4,416 evaSnp4,1052 evaSnp4,1129 evaSnp5,19 evaSnp5,75 evaSnp5,270 evaSnp5,416 evaSnp5,1052 evaSnp5,1129 gap,9 gap,75 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 intronEst,14 intronEst,126 intronEst,132 intronEst,194 intronEst,219 intronEst,231 intronEst,457 intronEst,723 intronEst,804 intronEst,807 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netHg38,14 netHg38,58 netHg38,61 netHg38,119 netHg38,259 netHg38,262 netHg38,310 netHg38,345 netHg38,377 netHg38,564 netHg38,691 netHg38,754 netMm10,14 netMm10,58 netMm10,61 netMm10,119 netMm10,259 netMm10,262 netMm10,310 netMm10,345 netMm10,377 netMm10,564 netMm10,691 netMm10,754 refGene,19 refGene,40 refGene,86 refGene,124 refGene,136 refGene,179 refGene,208 refGene,319 refSeqComposite,17 refSeqComposite,45 refSeqComposite,145 refSeqComposite,149 refSeqComposite,311 refSeqComposite,315 refSeqComposite,328 refSeqComposite,335 refSeqComposite,470 refSeqComposite,498 refSeqComposite,508 refSeqComposite,562 refSeqComposite,723 refSeqComposite,736 refSeqComposite,754 refSeqComposite,813 refSeqComposite,842 refSeqComposite,867 refSeqComposite,1197 refSeqComposite,1212 refSeqComposite,1336 refSeqComposite,1708 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 tanDups,53 tanDups,97 tanDups,151 tanDups,502 transMapEnsemblV5,16 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,231 transMapEnsemblV5,569 transMapEnsemblV5,573 transMapEnsemblV5,675 transMapEstV5,14 transMapEstV5,65 transMapEstV5,75 transMapEstV5,200 transMapEstV5,538 transMapEstV5,542 transMapEstV5,644 transMapRefSeqV5,15 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,200 transMapRefSeqV5,538 transMapRefSeqV5,542 transMapRefSeqV5,644 transMapRnaV5,15 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,200 transMapRnaV5,538 transMapRnaV5,542 transMapRnaV5,644 transMapV5,101 transMapV5,171 transMapV5,181 transMapV5,306 transMapV5,644 transMapV5,648 transMapV5,750 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoMrna,12 xenoMrna,34 xenoMrna,64 xenoMrna,134 xenoMrna,159 xenoMrna,171 xenoMrna,397 xenoMrna,515 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainHg38,768 chainMm10,768 chainNetHg38,771 chainNetMm10,771 ensGene,24 est,56 est,421 evaSnp,903 evaSnp4,944 evaSnp5,944 genscan,56 genscan,74 intronEst,140 intronEst,502 mrna,37 mrna,360 netHg38,768 netMm10,768 refGene,76 refGene,94 refSeqComposite,99 refSeqComposite,135 refSeqComposite,169 refSeqComposite,404 refSeqComposite,454 refSeqComposite,593 refSeqComposite,601 refSeqComposite,1137 refSeqComposite,1147 refSeqComposite,1223 refSeqComposite,1292 refSeqComposite,1371 refSeqComposite,1472 refSeqComposite,1579 refSeqComposite,1672 refSeqComposite,1697 tanDups,13 transMapEnsemblV5,104 transMapEnsemblV5,522 transMapEnsemblV5,583 transMapEstV5,73 transMapEstV5,491 transMapEstV5,552 transMapRefSeqV5,73 transMapRefSeqV5,491 transMapRefSeqV5,552 transMapRnaV5,73 transMapRnaV5,491 transMapRnaV5,552 transMapV5,13 transMapV5,179 transMapV5,597 transMapV5,658 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoMrna,42 xenoMrna,435 xenoRefGene,54 traditional chainHg38,84 chainMm10,84 chainNetHg38,87 chainNetMm10,87 netHg38,84 netMm10,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,41 est,456 intronEst,53 intronEst,537 refSeqComposite,430 transcript HLTOGAannotvHg38v1,118 HLTOGAannotvHg38v1,134 HLTOGAannotvHg38v1,258 HLTOGAannotvHg38v1,286 HLTOGAannotvHg38v1,297 est,551 evaSnp,441 evaSnp,762 evaSnp4,459 evaSnp4,783 evaSnp5,459 evaSnp5,783 intronEst,632 refSeqComposite,532 refSeqComposite,882 refSeqComposite,910 refSeqComposite,918 refSeqComposite,989 refSeqComposite,1032 refSeqComposite,1053 refSeqComposite,1118 refSeqComposite,1128 transMapEnsemblV5,153 transMapEnsemblV5,324 transMapEnsemblV5,377 transMapEstV5,122 transMapEstV5,293 transMapEstV5,346 transMapRefSeqV5,122 transMapRefSeqV5,293 transMapRefSeqV5,346 transMapRnaV5,122 transMapRnaV5,293 transMapRnaV5,346 transMapV5,228 transMapV5,399 transMapV5,452 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcript_ablation evaSnp,755 evaSnp4,776 evaSnp5,776 transcriptase est,507 intronEst,588 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 est,98 est,490 est,537 est,559 intronEst,179 intronEst,571 intronEst,618 intronEst,640 transcriptional genscan,28 transcripts HLTOGAannotvHg38v1,159 HLTOGAannotvHg38v1,188 HLTOGAannotvHg38v1,262 augustusGene,124 evaSnp,382 evaSnp,842 evaSnp4,382 evaSnp4,863 evaSnp5,382 evaSnp5,863 ncbiRefSeqGenomicDiff,7 refGene,417 refSeqComposite,255 refSeqComposite,322 refSeqComposite,469 refSeqComposite,520 refSeqComposite,553 refSeqComposite,1804 transMapEnsemblV5,341 transMapEstV5,310 transMapRefSeqV5,310 transMapRnaV5,310 transMapV5,416 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,376 translated transMapV5,155 xenoMrna,14 xenoMrna,79 xenoMrna,99 xenoMrna,468 translating evaSnp,853 evaSnp4,874 evaSnp5,874 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,440 transMapEnsemblV5,499 transMapEnsemblV5,588 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,663 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,409 transMapEstV5,468 transMapEstV5,557 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,632 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,409 transMapRefSeqV5,468 transMapRefSeqV5,557 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,632 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,409 transMapRnaV5,468 transMapRnaV5,557 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,632 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,70 transMapV5,100 transMapV5,157 transMapV5,515 transMapV5,574 transMapV5,663 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,738 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainHg38,565 chainHg38,589 chainHg38,898 chainMm10,565 chainMm10,589 chainMm10,898 chainNetHg38,568 chainNetHg38,592 chainNetHg38,901 chainNetMm10,568 chainNetMm10,592 chainNetMm10,901 netHg38,565 netHg38,589 netHg38,898 netMm10,565 netMm10,589 netMm10,898 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainHg38,796 chainMm10,796 chainNetHg38,799 chainNetMm10,799 netHg38,796 netMm10,796 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 tsukanov evaSnp,1131 evaSnp4,1176 evaSnp5,1176 turn chainHg38,332 chainMm10,332 chainNetHg38,335 chainNetMm10,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netHg38,332 netMm10,332 refGene,171 refSeqComposite,805 xenoRefGene,131 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainHg38,904 chainMm10,904 chainNetHg38,907 chainNetMm10,907 evaSnp,109 evaSnp,134 evaSnp4,109 evaSnp4,134 evaSnp5,109 evaSnp5,134 netHg38,904 netMm10,904 tanDups,12 transMapEnsemblV5,452 transMapEnsemblV5,489 transMapEstV5,421 transMapEstV5,458 transMapRefSeqV5,421 transMapRefSeqV5,458 transMapRnaV5,421 transMapRnaV5,458 transMapV5,527 transMapV5,564 uniprot,71 uniprot,630 uniprot,1641 xenoMrna,67 xenoMrna,104 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type est,166 est,196 evaSnp,430 evaSnp,606 evaSnp4,448 evaSnp4,624 evaSnp5,448 evaSnp5,624 gold,145 intronEst,247 intronEst,277 mrna,112 mrna,142 tanDups,86 uniprot,65 uniprot,271 uniprot,464 uniprot,614 xenoMrna,187 xenoMrna,217 types augustusGene,89 chainHg38,504 chainMm10,504 chainNetHg38,507 chainNetMm10,507 est,245 est,424 gap,121 gold,136 intronEst,326 intronEst,505 mrna,191 mrna,363 netHg38,504 netMm10,504 refSeqComposite,871 refSeqComposite,886 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 uniprot,676 xenoMrna,266 xenoMrna,438 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,429 typically HLTOGAannotvHg38v1,273 cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 est,30 est,459 gc5BaseBw,33 intronEst,42 intronEst,540 typing evaSnp,188 evaSnp4,188 evaSnp5,188 u chainHg38,1067 chainMm10,1067 chainNetHg38,1070 chainNetMm10,1070 netHg38,1067 netMm10,1067 u.c tanDups,484 tanDups,508 ucsc est,727 evaSnp,259 evaSnp,294 evaSnp,821 evaSnp,1103 evaSnp,1191 evaSnp4,259 evaSnp4,294 evaSnp4,404 evaSnp4,733 evaSnp4,842 evaSnp4,935 evaSnp4,1144 evaSnp4,1236 evaSnp5,259 evaSnp5,294 evaSnp5,404 evaSnp5,733 evaSnp5,842 evaSnp5,935 evaSnp5,1144 evaSnp5,1236 intronEst,811 mrna,444 nestedRepeats,245 refGene,1 refGene,3 refGene,323 refSeqComposite,43 refSeqComposite,47 refSeqComposite,70 refSeqComposite,192 refSeqComposite,333 refSeqComposite,477 refSeqComposite,483 refSeqComposite,591 refSeqComposite,1151 refSeqComposite,1201 refSeqComposite,1209 refSeqComposite,1413 refSeqComposite,1598 refSeqComposite,1712 transMapEnsemblV5,35 transMapEnsemblV5,162 transMapEnsemblV5,183 transMapEnsemblV5,682 transMapEstV5,33 transMapEstV5,131 transMapEstV5,152 transMapEstV5,651 transMapRefSeqV5,33 transMapRefSeqV5,131 transMapRefSeqV5,152 transMapRefSeqV5,651 transMapRnaV5,33 transMapRnaV5,131 transMapRnaV5,152 transMapRnaV5,651 transMapV5,32 transMapV5,237 transMapV5,258 transMapV5,757 ucscToINSDC,17 ucscToRefSeq,12 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoMrna,519 xenoRefGene,283 ucsc-generated evaSnp,285 evaSnp4,285 evaSnp5,285 ucsc-style evaSnp,684 evaSnp4,702 evaSnp5,702 ucscclass evaSnp,307 evaSnp4,307 evaSnp5,307 ucscclasses evaSnp,339 evaSnp4,339 evaSnp5,339 unambiguously refSeqComposite,1108 uncertain HLTOGAannotvHg38v1,235 uncheck refSeqComposite,163 undergone refGene,107 refSeqComposite,614 xenoRefGene,67 underlies genscan,142 underlying refGene,38 uniprot,1682 xenoRefGene,35 underneath chainHg38,832 chainMm10,832 chainNetHg38,835 chainNetMm10,835 netHg38,832 netMm10,832 unexpected uniprot,766 ungapped chainHg38,443 chainMm10,443 chainNetHg38,446 chainNetMm10,446 netHg38,443 netMm10,443 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,383 transMapEnsemblV5,394 transMapEnsemblV5,431 transMapEnsemblV5,442 transMapEstV5,352 transMapEstV5,363 transMapEstV5,400 transMapEstV5,411 transMapRefSeqV5,352 transMapRefSeqV5,363 transMapRefSeqV5,400 transMapRefSeqV5,411 transMapRnaV5,352 transMapRnaV5,363 transMapRnaV5,400 transMapRnaV5,411 transMapV5,458 transMapV5,469 transMapV5,506 transMapV5,517 uniprot,1600 universal uniprot,1993 university chainHg38,918 chainHg38,952 chainHg38,998 chainHg38,1021 chainMm10,918 chainMm10,952 chainMm10,998 chainMm10,1021 chainNetHg38,921 chainNetHg38,955 chainNetHg38,1001 chainNetHg38,1024 chainNetMm10,921 chainNetMm10,955 chainNetMm10,1001 chainNetMm10,1024 netHg38,918 netHg38,952 netHg38,998 netHg38,1021 netMm10,918 netMm10,952 netMm10,998 netMm10,1021 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unlikely HLTOGAannotvHg38v1,288 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainHg38,226 chainMm10,226 chainNetHg38,229 chainNetMm10,229 est,602 intronEst,683 netHg38,226 netMm10,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainHg38,184 chainMm10,184 chainNetHg38,187 chainNetMm10,187 netHg38,184 netMm10,184 unspliced est,6 est,631 intronEst,121 intronEst,712 unsure rmsk,263 untranscribed refSeqComposite,407 untranslated evaSnp,443 evaSnp,764 evaSnp4,461 evaSnp4,785 evaSnp5,461 evaSnp5,785 unusual tanDups,59 up gold,76 refSeqComposite,1439 refSeqComposite,1633 rmsk,146 tanDups,173 tanDups,286 tanDups,296 update est,782 intronEst,866 mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refGene,382 refSeqComposite,1769 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoMrna,574 xenoRefGene,341 updated refGene,42 uniprot,1566 xenoRefGene,39 upstream tanDups,127 tanDups,241 upstream_gene_variant evaSnp,776 evaSnp4,797 evaSnp5,797 upstreamcontig.fa tanDups,212 us uniprot,687 uniprot,1441 use est,163 evaSnp,918 evaSnp4,959 evaSnp5,959 gold,87 intronEst,244 mrna,109 refSeqComposite,35 refSeqComposite,1541 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 xenoMrna,184 used HLTOGAannotvHg38v1,105 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainHg38,293 chainHg38,665 chainHg38,696 chainHg38,787 chainHg38,839 chainHg38,872 chainMm10,293 chainMm10,665 chainMm10,696 chainMm10,787 chainMm10,839 chainMm10,872 chainNetHg38,296 chainNetHg38,668 chainNetHg38,699 chainNetHg38,790 chainNetHg38,842 chainNetHg38,875 chainNetMm10,296 chainNetMm10,668 chainNetMm10,699 chainNetMm10,790 chainNetMm10,842 chainNetMm10,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 est,120 est,272 est,331 est,570 evaSnp,389 evaSnp,396 evaSnp,711 evaSnp,720 evaSnp,1062 evaSnp4,389 evaSnp4,724 evaSnp4,1103 evaSnp5,389 evaSnp5,724 evaSnp5,1103 genscan,159 gold,14 intronEst,201 intronEst,353 intronEst,412 intronEst,651 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netHg38,293 netHg38,665 netHg38,696 netHg38,787 netHg38,839 netHg38,872 netMm10,293 netMm10,665 netMm10,696 netMm10,787 netMm10,839 netMm10,872 refSeqComposite,233 refSeqComposite,243 refSeqComposite,996 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,186 transMapEnsemblV5,238 transMapEnsemblV5,243 transMapEnsemblV5,263 transMapEnsemblV5,283 transMapEnsemblV5,315 transMapEnsemblV5,647 transMapEstV5,155 transMapEstV5,207 transMapEstV5,212 transMapEstV5,232 transMapEstV5,252 transMapEstV5,284 transMapEstV5,616 transMapRefSeqV5,155 transMapRefSeqV5,207 transMapRefSeqV5,212 transMapRefSeqV5,232 transMapRefSeqV5,252 transMapRefSeqV5,284 transMapRefSeqV5,616 transMapRnaV5,155 transMapRnaV5,207 transMapRnaV5,212 transMapRnaV5,232 transMapRnaV5,252 transMapRnaV5,284 transMapRnaV5,616 transMapV5,69 transMapV5,261 transMapV5,313 transMapV5,318 transMapV5,338 transMapV5,358 transMapV5,390 transMapV5,722 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 xenoMrna,141 xenoMrna,293 xenoMrna,352 useful chainHg38,278 chainHg38,477 chainMm10,278 chainMm10,477 chainNetHg38,281 chainNetHg38,480 chainNetMm10,281 chainNetMm10,480 microsat,20 netHg38,278 netHg38,477 netMm10,278 netMm10,477 user est,390 intronEst,471 mrna,336 transMapEnsemblV5,120 transMapEstV5,89 transMapRefSeqV5,89 transMapRnaV5,89 transMapV5,195 xenoMrna,411 users refGene,188 refSeqComposite,822 uniprot,406 uniprot,684 xenoRefGene,148 uses HLTOGAannotvHg38v1,45 HLTOGAannotvHg38v1,87 rmsk,79 using HLTOGAannotvHg38v1,6 augustusGene,294 chainHg38,74 chainHg38,602 chainHg38,761 chainMm10,74 chainMm10,602 chainMm10,761 chainNetHg38,77 chainNetHg38,605 chainNetHg38,764 chainNetMm10,77 chainNetMm10,605 chainNetMm10,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 est,652 evaSnp,268 evaSnp,820 evaSnp,1025 evaSnp,1102 evaSnp4,268 evaSnp4,841 evaSnp4,1066 evaSnp4,1143 evaSnp5,268 evaSnp5,841 evaSnp5,1066 evaSnp5,1143 intronEst,733 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netHg38,74 netHg38,602 netHg38,761 netMm10,74 netMm10,602 netMm10,761 refGene,264 refSeqComposite,78 refSeqComposite,1152 refSeqComposite,1202 refSeqComposite,1215 refSeqComposite,1232 refSeqComposite,1304 refSeqComposite,1502 refSeqComposite,1587 refSeqComposite,1618 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,561 transMapEnsemblV5,610 transMapEnsemblV5,762 transMapEstV5,44 transMapEstV5,530 transMapEstV5,579 transMapEstV5,731 transMapRefSeqV5,44 transMapRefSeqV5,530 transMapRefSeqV5,579 transMapRefSeqV5,731 transMapRnaV5,44 transMapRnaV5,530 transMapRnaV5,579 transMapRnaV5,731 transMapV5,43 transMapV5,81 transMapV5,124 transMapV5,135 transMapV5,142 transMapV5,636 transMapV5,685 transMapV5,837 uniprot,217 uniprot,722 uniprot,1526 xenoMrna,467 xenoRefGene,224 ustat windowmaskerSdust,66 usually est,37 intronEst,49 nestedRepeats,192 transMapEnsemblV5,502 transMapEstV5,471 transMapRefSeqV5,471 transMapRnaV5,471 transMapV5,577 utilities refSeqComposite,1525 refSeqComposite,1594 utility refSeqComposite,1590 refSeqComposite,1602 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr evaSnp,445 evaSnp,766 evaSnp4,463 evaSnp4,787 evaSnp5,463 evaSnp5,787 transMapV5,164 v HLTOGAannotvHg38v1,343 ensGene,185 v3.1 augustusGene,7 v4 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 v5 transMapV5,2 transMapV5,739 valid est,211 intronEst,292 mrna,157 xenoMrna,232 validate refGene,191 refSeqComposite,825 xenoRefGene,151 validation genscan,107 value est,282 intronEst,363 mrna,228 xenoMrna,303 variant evaSnp,10 evaSnp,87 evaSnp,94 evaSnp,183 evaSnp,192 evaSnp,223 evaSnp,236 evaSnp,261 evaSnp,315 evaSnp,377 evaSnp,415 evaSnp,429 evaSnp,514 evaSnp,564 evaSnp,697 evaSnp,792 evaSnp,823 evaSnp,862 evaSnp,1105 evaSnp,1195 evaSnp4,10 evaSnp4,87 evaSnp4,94 evaSnp4,183 evaSnp4,192 evaSnp4,223 evaSnp4,236 evaSnp4,261 evaSnp4,315 evaSnp4,377 evaSnp4,433 evaSnp4,447 evaSnp4,532 evaSnp4,582 evaSnp4,709 evaSnp4,813 evaSnp4,844 evaSnp4,883 evaSnp4,1146 evaSnp4,1240 evaSnp5,10 evaSnp5,87 evaSnp5,94 evaSnp5,183 evaSnp5,192 evaSnp5,223 evaSnp5,236 evaSnp5,261 evaSnp5,315 evaSnp5,377 evaSnp5,433 evaSnp5,447 evaSnp5,532 evaSnp5,582 evaSnp5,709 evaSnp5,813 evaSnp5,844 evaSnp5,883 evaSnp5,1146 evaSnp5,1240 uniprot,2026 variants evaSnp,7 evaSnp,25 evaSnp,54 evaSnp,61 evaSnp,126 evaSnp,154 evaSnp,264 evaSnp,400 evaSnp,432 evaSnp,436 evaSnp,439 evaSnp,446 evaSnp,450 evaSnp,454 evaSnp,652 evaSnp,688 evaSnp,693 evaSnp,724 evaSnp,738 evaSnp,742 evaSnp,758 evaSnp,767 evaSnp,775 evaSnp,834 evaSnp4,7 evaSnp4,25 evaSnp4,54 evaSnp4,61 evaSnp4,126 evaSnp4,154 evaSnp4,264 evaSnp4,418 evaSnp4,450 evaSnp4,454 evaSnp4,457 evaSnp4,464 evaSnp4,468 evaSnp4,472 evaSnp4,670 evaSnp4,705 evaSnp4,745 evaSnp4,759 evaSnp4,763 evaSnp4,779 evaSnp4,788 evaSnp4,796 evaSnp4,855 evaSnp5,7 evaSnp5,25 evaSnp5,54 evaSnp5,61 evaSnp5,126 evaSnp5,154 evaSnp5,264 evaSnp5,418 evaSnp5,450 evaSnp5,454 evaSnp5,457 evaSnp5,464 evaSnp5,468 evaSnp5,472 evaSnp5,670 evaSnp5,705 evaSnp5,745 evaSnp5,759 evaSnp5,763 evaSnp5,779 evaSnp5,788 evaSnp5,796 evaSnp5,855 refSeqComposite,947 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation evaSnp,14 evaSnp,35 evaSnp,666 evaSnp,1094 evaSnp,1139 evaSnp,1146 evaSnp4,14 evaSnp4,35 evaSnp4,684 evaSnp4,1135 evaSnp4,1184 evaSnp4,1191 evaSnp5,14 evaSnp5,35 evaSnp5,684 evaSnp5,1135 evaSnp5,1184 evaSnp5,1191 microsat,7 nestedRepeats,11 refSeqComposite,1074 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainHg38,1025 chainMm10,1025 chainNetHg38,1028 chainNetMm10,1028 netHg38,1025 netMm10,1025 vector est,467 intronEst,548 venkataraman evaSnp,1133 evaSnp4,1178 evaSnp5,1178 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1131 refSeqComposite,1565 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1337 refSeqComposite,1691 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,158 transMapEnsemblV5,191 transMapEstV5,29 transMapEstV5,127 transMapEstV5,160 transMapRefSeqV5,29 transMapRefSeqV5,127 transMapRefSeqV5,160 transMapRnaV5,29 transMapRnaV5,127 transMapRnaV5,160 transMapV5,28 transMapV5,113 transMapV5,233 transMapV5,266 xenoMrna,18 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very est,673 intronEst,754 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,326 transMapEstV5,295 transMapRefSeqV5,295 transMapRnaV5,295 transMapV5,401 uniprot,1293 view chainHg38,454 chainMm10,454 chainNetHg38,457 chainNetMm10,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 est,207 intronEst,288 mrna,153 netHg38,454 netMm10,454 xenoMrna,228 viewed est,635 gold,79 intronEst,716 viewing evaSnp,73 evaSnp4,73 evaSnp5,73 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 evaSnp,147 evaSnp4,147 evaSnp5,147 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refGene,45 refSeqComposite,103 vs HLTOGAannotvHg38v1,2 w chainHg38,1027 chainHg38,1047 chainHg38,1095 chainMm10,1027 chainMm10,1047 chainMm10,1095 chainNetHg38,1030 chainNetHg38,1050 chainNetHg38,1098 chainNetMm10,1030 chainNetMm10,1050 chainNetMm10,1098 gold,148 netHg38,1027 netHg38,1047 netHg38,1095 netMm10,1027 netMm10,1047 netMm10,1095 waack augustusGene,318 want uniprot,690 was HLTOGAannotvHg38v1,317 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainHg38,646 chainHg38,664 chainHg38,785 chainHg38,830 chainHg38,838 chainHg38,858 chainHg38,870 chainHg38,895 chainHg38,913 chainHg38,948 chainMm10,646 chainMm10,664 chainMm10,785 chainMm10,830 chainMm10,838 chainMm10,858 chainMm10,870 chainMm10,895 chainMm10,913 chainMm10,948 chainNetHg38,649 chainNetHg38,667 chainNetHg38,788 chainNetHg38,833 chainNetHg38,841 chainNetHg38,861 chainNetHg38,873 chainNetHg38,898 chainNetHg38,916 chainNetHg38,951 chainNetMm10,649 chainNetMm10,667 chainNetMm10,788 chainNetMm10,833 chainNetMm10,841 chainNetMm10,861 chainNetMm10,873 chainNetMm10,898 chainNetMm10,916 chainNetMm10,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 est,695 est,724 evaSnp,1089 evaSnp4,414 evaSnp4,929 evaSnp4,1130 evaSnp5,414 evaSnp5,929 evaSnp5,1130 intronEst,776 intronEst,808 microsat,108 mrna,411 mrna,441 netHg38,646 netHg38,664 netHg38,785 netHg38,830 netHg38,838 netHg38,858 netHg38,870 netHg38,895 netHg38,913 netHg38,948 netMm10,646 netMm10,664 netMm10,785 netMm10,830 netMm10,838 netMm10,858 netMm10,870 netMm10,895 netMm10,913 netMm10,948 refGene,291 refGene,320 refSeqComposite,499 refSeqComposite,1259 refSeqComposite,1709 rmsk,12 rmsk,262 simpleRepeat,68 tanDups,66 transMapEnsemblV5,220 transMapEnsemblV5,237 transMapEnsemblV5,282 transMapEnsemblV5,314 transMapEnsemblV5,676 transMapEstV5,189 transMapEstV5,206 transMapEstV5,251 transMapEstV5,283 transMapEstV5,645 transMapRefSeqV5,189 transMapRefSeqV5,206 transMapRefSeqV5,251 transMapRefSeqV5,283 transMapRefSeqV5,645 transMapRnaV5,189 transMapRnaV5,206 transMapRnaV5,251 transMapRnaV5,283 transMapRnaV5,645 transMapV5,295 transMapV5,312 transMapV5,357 transMapV5,389 transMapV5,751 ucscToINSDC,48 ucscToRefSeq,42 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoMrna,485 xenoMrna,516 xenoRefGene,251 xenoRefGene,280 way tanDups,446 transMapEnsemblV5,587 transMapEstV5,556 transMapRefSeqV5,556 transMapRnaV5,556 transMapV5,662 uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1298 we ensGene,146 refSeqComposite,76 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 weaker HLTOGAannotvHg38v1,198 webb chainHg38,927 chainHg38,964 chainMm10,927 chainMm10,964 chainNetHg38,930 chainNetHg38,967 chainNetMm10,930 chainNetMm10,967 netHg38,927 netHg38,964 netMm10,927 netMm10,964 weekly refGene,43 xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 est,539 est,562 evaSnp4,1154 evaSnp5,1154 genscan,36 intronEst,620 intronEst,643 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainHg38,575 chainHg38,583 chainHg38,590 chainHg38,597 chainHg38,609 chainHg38,682 chainHg38,756 chainHg38,936 chainHg38,980 chainHg38,994 chainMm10,575 chainMm10,583 chainMm10,590 chainMm10,597 chainMm10,609 chainMm10,682 chainMm10,756 chainMm10,936 chainMm10,980 chainMm10,994 chainNetHg38,578 chainNetHg38,586 chainNetHg38,593 chainNetHg38,600 chainNetHg38,612 chainNetHg38,685 chainNetHg38,759 chainNetHg38,939 chainNetHg38,983 chainNetHg38,997 chainNetMm10,578 chainNetMm10,586 chainNetMm10,593 chainNetMm10,600 chainNetMm10,612 chainNetMm10,685 chainNetMm10,759 chainNetMm10,939 chainNetMm10,983 chainNetMm10,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 est,589 est,647 est,719 evaSnp,390 evaSnp,661 evaSnp,681 evaSnp,689 evaSnp,710 evaSnp,725 evaSnp,788 evaSnp,797 evaSnp,808 evaSnp,818 evaSnp,1100 evaSnp4,390 evaSnp4,679 evaSnp4,699 evaSnp4,723 evaSnp4,743 evaSnp4,746 evaSnp4,809 evaSnp4,818 evaSnp4,829 evaSnp4,839 evaSnp4,1141 evaSnp5,390 evaSnp5,679 evaSnp5,699 evaSnp5,723 evaSnp5,743 evaSnp5,746 evaSnp5,809 evaSnp5,818 evaSnp5,829 evaSnp5,839 evaSnp5,1141 gc5BaseBw,79 intronEst,670 intronEst,728 mrna,387 mrna,435 netHg38,575 netHg38,583 netHg38,590 netHg38,597 netHg38,609 netHg38,682 netHg38,756 netHg38,936 netHg38,980 netHg38,994 netMm10,575 netMm10,583 netMm10,590 netMm10,597 netMm10,609 netMm10,682 netMm10,756 netMm10,936 netMm10,980 netMm10,994 refGene,258 refGene,274 refGene,315 refSeqComposite,100 refSeqComposite,248 refSeqComposite,357 refSeqComposite,419 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1226 refSeqComposite,1242 refSeqComposite,1283 tanDups,184 tanDups,258 tanDups,503 transMapEnsemblV5,155 transMapEnsemblV5,185 transMapEnsemblV5,211 transMapEnsemblV5,242 transMapEnsemblV5,248 transMapEnsemblV5,262 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,392 transMapEstV5,124 transMapEstV5,154 transMapEstV5,180 transMapEstV5,211 transMapEstV5,217 transMapEstV5,231 transMapEstV5,317 transMapEstV5,348 transMapEstV5,361 transMapRefSeqV5,124 transMapRefSeqV5,154 transMapRefSeqV5,180 transMapRefSeqV5,211 transMapRefSeqV5,217 transMapRefSeqV5,231 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,361 transMapRnaV5,124 transMapRnaV5,154 transMapRnaV5,180 transMapRnaV5,211 transMapRnaV5,217 transMapRnaV5,231 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,361 transMapV5,115 transMapV5,128 transMapV5,230 transMapV5,260 transMapV5,286 transMapV5,317 transMapV5,323 transMapV5,337 transMapV5,423 transMapV5,454 transMapV5,467 ucscToINSDC,35 ucscToRefSeq,29 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoMrna,461 xenoMrna,510 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wget uniprot,1903 uniprot,1913 what tanDups,85 wheeler est,779 intronEst,863 mrna,496 xenoMrna,571 when augustusGene,188 augustusGene,238 chainHg38,405 chainMm10,405 chainNetHg38,408 chainNetMm10,408 est,143 est,153 est,680 evaSnp,72 evaSnp,148 evaSnp,158 evaSnp,321 evaSnp4,72 evaSnp4,148 evaSnp4,158 evaSnp4,321 evaSnp4,395 evaSnp4,725 evaSnp4,737 evaSnp5,72 evaSnp5,148 evaSnp5,158 evaSnp5,321 evaSnp5,395 evaSnp5,725 evaSnp5,737 gap,130 intronEst,33 intronEst,224 intronEst,234 intronEst,761 mrna,89 mrna,99 mrna,396 netHg38,405 netMm10,405 refGene,276 refSeqComposite,1088 refSeqComposite,1244 tanDups,57 tanDups,306 tanDups,386 transMapEnsemblV5,465 transMapEstV5,434 transMapRefSeqV5,434 transMapRnaV5,434 transMapV5,540 uniprot,951 uniprot,1202 uniprot,1632 xenoMrna,164 xenoMrna,174 xenoMrna,470 xenoRefGene,236 where chainHg38,191 chainMm10,191 chainNetHg38,194 chainNetMm10,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,94 netHg38,191 netMm10,191 tanDups,110 tanDups,231 transMapEnsemblV5,270 transMapEnsemblV5,371 transMapEnsemblV5,420 transMapEnsemblV5,508 transMapEstV5,239 transMapEstV5,340 transMapEstV5,389 transMapEstV5,477 transMapRefSeqV5,239 transMapRefSeqV5,340 transMapRefSeqV5,389 transMapRefSeqV5,477 transMapRnaV5,239 transMapRnaV5,340 transMapRnaV5,389 transMapRnaV5,477 transMapV5,345 transMapV5,446 transMapV5,495 transMapV5,583 uniprot,1192 whether chainHg38,854 chainMm10,854 chainNetHg38,857 chainNetMm10,857 netHg38,854 netMm10,854 which augustusGene,159 augustusGene,227 chainHg38,322 chainHg38,613 chainHg38,819 chainMm10,322 chainMm10,613 chainMm10,819 chainNetHg38,325 chainNetHg38,616 chainNetHg38,822 chainNetMm10,325 chainNetMm10,616 chainNetMm10,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 est,103 est,230 est,496 est,521 est,667 evaSnp,291 evaSnp,308 evaSnp,325 evaSnp,340 evaSnp,395 evaSnp,719 evaSnp,843 evaSnp,1029 evaSnp4,291 evaSnp4,308 evaSnp4,325 evaSnp4,340 evaSnp4,864 evaSnp4,1070 evaSnp5,291 evaSnp5,308 evaSnp5,325 evaSnp5,340 evaSnp5,864 evaSnp5,1070 intronEst,184 intronEst,311 intronEst,577 intronEst,602 intronEst,748 mrna,176 nestedRepeats,31 nestedRepeats,87 netHg38,322 netHg38,613 netHg38,819 netMm10,322 netMm10,613 netMm10,819 refSeqComposite,46 refSeqComposite,261 refSeqComposite,1478 refSeqComposite,1506 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,614 transMapEstV5,583 transMapRefSeqV5,583 transMapRnaV5,583 transMapV5,144 transMapV5,689 uniprot,158 uniprot,1380 uniprot,1768 xenoMrna,251 while chainHg38,214 chainMm10,214 chainNetHg38,217 chainNetMm10,217 netHg38,214 netMm10,214 white gap,104 whole HLTOGAannotvHg38v1,63 chainHg38,462 chainMm10,462 chainNetHg38,465 chainNetMm10,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 evaSnp,1019 evaSnp4,1060 evaSnp5,1060 gold,149 netHg38,462 netMm10,462 refSeqComposite,1494 transMapEnsemblV5,604 transMapEstV5,573 transMapRefSeqV5,573 transMapRnaV5,573 transMapV5,679 whose refSeqComposite,220 refSeqComposite,349 refSeqComposite,963 transMapEnsemblV5,217 transMapEstV5,186 transMapRefSeqV5,186 transMapRnaV5,186 transMapV5,292 xenoMrna,78 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 evaSnp,83 evaSnp,91 evaSnp,118 evaSnp4,83 evaSnp4,91 evaSnp4,118 evaSnp5,83 evaSnp5,91 evaSnp5,118 wildcards est,268 intronEst,349 mrna,214 xenoMrna,289 will est,301 est,319 est,348 est,365 evaSnp,341 evaSnp4,341 evaSnp5,341 intronEst,382 intronEst,400 intronEst,429 intronEst,446 mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 xenoMrna,322 xenoMrna,340 xenoMrna,369 xenoMrna,386 window evaSnp,157 evaSnp,160 evaSnp4,157 evaSnp4,160 evaSnp5,157 evaSnp5,160 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish est,232 intronEst,313 mrna,178 refGene,245 refSeqComposite,172 xenoMrna,253 xenoRefGene,205 with HLTOGAannotvHg38v1,359 augustusGene,127 augustusGene,322 chainHg38,42 chainHg38,205 chainHg38,216 chainHg38,585 chainHg38,697 chainHg38,773 chainHg38,897 chainHg38,929 chainHg38,961 chainHg38,1098 chainMm10,42 chainMm10,205 chainMm10,216 chainMm10,585 chainMm10,697 chainMm10,773 chainMm10,897 chainMm10,929 chainMm10,961 chainMm10,1098 chainNetHg38,45 chainNetHg38,208 chainNetHg38,219 chainNetHg38,588 chainNetHg38,700 chainNetHg38,776 chainNetHg38,900 chainNetHg38,932 chainNetHg38,964 chainNetHg38,1101 chainNetMm10,45 chainNetMm10,208 chainNetMm10,219 chainNetMm10,588 chainNetMm10,700 chainNetMm10,776 chainNetMm10,900 chainNetMm10,932 chainNetMm10,964 chainNetMm10,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 est,102 est,498 est,636 est,672 est,715 evaSnp,219 evaSnp,949 evaSnp4,219 evaSnp4,990 evaSnp5,219 evaSnp5,990 gap,52 gc5BaseBw,35 gold,51 gold,141 intronEst,183 intronEst,579 intronEst,717 intronEst,753 intronEst,796 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netHg38,42 netHg38,205 netHg38,216 netHg38,585 netHg38,697 netHg38,773 netHg38,897 netHg38,929 netHg38,961 netHg38,1098 netMm10,42 netMm10,205 netMm10,216 netMm10,585 netMm10,697 netMm10,773 netMm10,897 netMm10,929 netMm10,961 netMm10,1098 refGene,267 refGene,311 refSeqComposite,223 refSeqComposite,352 refSeqComposite,488 refSeqComposite,950 refSeqComposite,979 refSeqComposite,1038 refSeqComposite,1065 refSeqComposite,1091 refSeqComposite,1130 refSeqComposite,1235 refSeqComposite,1279 refSeqComposite,1397 rmsk,111 rmsk,225 simpleRepeat,52 tanDups,201 tanDups,260 tanDups,275 tanDups,289 tanDups,338 tanDups,410 tanDups,439 transMapEnsemblV5,51 transMapEnsemblV5,182 transMapEnsemblV5,250 transMapEnsemblV5,350 transMapEnsemblV5,352 transMapEnsemblV5,581 transMapEstV5,151 transMapEstV5,219 transMapEstV5,319 transMapEstV5,321 transMapEstV5,550 transMapRefSeqV5,151 transMapRefSeqV5,219 transMapRefSeqV5,319 transMapRefSeqV5,321 transMapRefSeqV5,550 transMapRnaV5,151 transMapRnaV5,219 transMapRnaV5,319 transMapRnaV5,321 transMapRnaV5,550 transMapV5,257 transMapV5,325 transMapV5,425 transMapV5,427 transMapV5,656 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoMrna,506 xenoRefGene,227 xenoRefGene,271 within est,136 est,549 est,704 evaSnp,1067 evaSnp4,1108 evaSnp5,1108 gold,116 intronEst,217 intronEst,630 intronEst,785 mrna,82 mrna,420 refGene,122 refGene,300 refSeqComposite,721 refSeqComposite,1268 simpleRepeat,37 transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoMrna,157 xenoMrna,495 xenoRefGene,82 xenoRefGene,260 without uniprot,139 wj chainHg38,1041 chainHg38,1083 chainMm10,1041 chainMm10,1083 chainNetHg38,1044 chainNetHg38,1086 chainNetMm10,1044 chainNetMm10,1086 est,798 evaSnp,1190 evaSnp4,1235 evaSnp5,1235 intronEst,882 mrna,515 netHg38,1041 netHg38,1083 netMm10,1041 netMm10,1083 refGene,341 refSeqComposite,1728 xenoMrna,590 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide est,741 intronEst,825 mrna,458 refGene,331 refSeqComposite,1718 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 xenoMrna,533 xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 evaSnp,885 evaSnp4,907 evaSnp5,907 tanDups,390 wrench refSeqComposite,749 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,353 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,355 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 y ensGene,177 yap chainHg38,1024 chainMm10,1024 chainNetHg38,1027 chainNetMm10,1027 netHg38,1024 netMm10,1024 years uniprot,933 yet evaSnp,658 evaSnp4,676 evaSnp5,676 refSeqComposite,672 refSeqComposite,697 yip uniprot,2010 yl uniprot,2011 you est,231 intronEst,312 mrna,177 refGene,244 refSeqComposite,171 refSeqComposite,1347 refSeqComposite,1455 refSeqComposite,1539 refSeqComposite,1559 refSeqComposite,1629 rmsk,115 tanDups,470 uniprot,655 uniprot,689 uniprot,1443 xenoMrna,252 xenoRefGene,204 younger nestedRepeats,94 your evaSnp,1044 evaSnp4,1085 evaSnp5,1085 refSeqComposite,1521 refSeqComposite,1634 transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1783 yp refSeqComposite,228 refSeqComposite,231 refSeqComposite,241 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainHg38,1087 chainMm10,1087 chainNetHg38,1090 chainNetMm10,1090 netHg38,1087 netMm10,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainHg38,925 chainHg38,1086 chainMm10,925 chainMm10,1086 chainNetHg38,928 chainNetHg38,1089 chainNetMm10,928 chainNetMm10,1089 netHg38,925 netHg38,1086 netMm10,925 netMm10,1086 zheng chainHg38,924 chainMm10,924 chainNetHg38,927 chainNetMm10,927 netHg38,924 netMm10,924 zhu transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 zinc uniprot,326 zoom evaSnp,70 evaSnp4,70 evaSnp5,70 zoomed-in genscan,103 zweig evaSnp,1185 evaSnp4,1230 evaSnp5,1230