##maf version=1 scoring=roast.v3.3 a score=468.000000 s galGal6.chr28_NW_020109768v1_random 319 21 + 1519 CAGCGCCTCCGCCCCACGCGC s pteGut1.KL229310 37032 21 - 38765 CATCACCTACACCTCAACCTT i pteGut1.KL229310 N 0 C 0 a score=483.000000 s galGal6.chr28_NW_020109768v1_random 340 4 + 1519 AGCC s pteGut1.KL229310 37053 4 - 38765 TGCC i pteGut1.KL229310 C 0 I 33 s allMis1.JH732066 166896 4 + 231711 AACC i allMis1.JH732066 N 0 C 0 a score=-81.000000 s galGal6.chr28_NW_020109768v1_random 344 22 + 1519 CCACCGCGCACCCGCACCGCCC s allMis1.JH732066 166900 22 + 231711 CCTCCGCACAGACCCAGGAGAG i allMis1.JH732066 C 0 C 0 e pteGut1.KL229310 37057 33 - 38765 I a score=-155.000000 s galGal6.chr28_NW_020109768v1_random 366 1 + 1519 T s pteGut1.KL229310 37090 1 - 38765 A i pteGut1.KL229310 I 33 I 25 s allMis1.JH732066 166922 1 + 231711 T i allMis1.JH732066 C 0 C 0 a score=-207.000000 s galGal6.chr28_NW_020109768v1_random 367 35 + 1519 ATGGGGGGACAgccgctatggggcagccgctatgg s allMis1.JH732066 166923 26 + 231711 TCAGGGAGCCAATC-CCACCGGGCAA--------G i allMis1.JH732066 C 0 C 0 e pteGut1.KL229310 37091 25 - 38765 I a score=300.000000 s galGal6.chr28_NW_020109768v1_random 402 1 + 1519 g s pteGut1.KL229310 37116 1 - 38765 G i pteGut1.KL229310 I 25 I 25 s allMis1.JH732066 166949 1 + 231711 G i allMis1.JH732066 C 0 C 0 a score=684.000000 s galGal6.chr28_NW_020109768v1_random 403 20 + 1519 gcagcagcacagccacactg- s allMis1.JH732066 166950 21 + 231711 ACTGCAGCACAGCTGGACTGG i allMis1.JH732066 C 0 C 0 e pteGut1.KL229310 37117 25 - 38765 I a score=32.000000 s galGal6.chr28_NW_020109768v1_random 423 2 + 1519 cc s pteGut1.KL229310 37142 2 - 38765 CA i pteGut1.KL229310 I 25 I 39 s allMis1.JH732066 166971 2 + 231711 CT i allMis1.JH732066 C 0 C 0 a score=-446.000000 s galGal6.chr28_NW_020109768v1_random 425 30 + 1519 gctatggggcagcagcacagcccc--------actgct s allMis1.JH732066 166973 36 + 231711 GGCATGT--CAGGGGTCTGACCCCTAGGGAGAAATGAT i allMis1.JH732066 C 0 C 0 e pteGut1.KL229310 37144 39 - 38765 I a score=-2338.000000 s galGal6.chr28_NW_020109768v1_random 455 139 + 1519 --gctatggggcagcactgctatggggcagcactgc-----------tATGGGGCGGCT--------CAGCGCCTCC--GCCCCACGCGCAGCCCCACCGCGCGCCCGCACCGCCCTATGGGGGGACAgccgctatggggcagcgccaCTATGGGGCAGCAA s pteGut1.KL229310 37183 144 - 38765 --GGCCTTGGCTAACTCTCagatgagattttatttt-----------tagggcGTCACCTCCACAGCCAGTGCCCCA--GCCCCAAGCACAGCCCCACCGGGAGCCAGCACTGCGCT---GCATGCCGGGCACTGTGGGACAGCCTCGTGTGCGCCCAGCAG i pteGut1.KL229310 I 39 N 0 s allMis1.JH732066 167009 142 + 231711 CCACCAAGGAGGAAATCCTAGGGAGGCAGAGACTGCCAAGCAAGGGGTGGGGGGGGGGTCCCTGACTCGGTGCCTCAAGAAGCCAGGACTAGCCCCTCCAC---CCAACATTGGGT----GCAGGAC---CCCTCTTTACCAAT----------CACAGCAG i allMis1.JH732066 C 0 C 0 a score=2316.000000 s galGal6.chr28_NW_020109768v1_random 594 87 + 1519 CACAGACCCACTGCCACTATGGGGCAGCGCCGCTATGGGGTAGC--ACCTCCGCCCCACACGCAGCCCCACCGCGCACCCGCAACGCCC s allMis1.JH732066 167151 87 + 231711 CAGAGCCCCACTGTGACCA--AAGTGAGGCCACCATGGTGCATCCCACTGCCAGCCCCCTAGCAGCCCTGTCGGGCCCCAGCAGCGCCC i allMis1.JH732066 C 0 N 0 a score=-138.000000 s galGal6.chr28_NW_020109768v1_random 899 52 + 1519 cccataccagccccatacccacccc--atacccgccccacagccca-----ccccacag s allSin1.KE696955 285472 59 + 581154 CCCAATCTAGCCCCTATTCTAGCCCTGAAACCCAGCAAAGAACCCAGGTGTCTGGGCTC i allSin1.KE696955 N 0 C 0 a score=3894.000000 s galGal6.chr28_NW_020109768v1_random 951 29 + 1519 ccgacccacacccaccccataccctcccc s allMis1.JH731138 106408 29 - 208525 CCAACCCACCACTACTTTAGCTCCTCAAG i allMis1.JH731138 N 0 C 0 s allSin1.KE696955 285531 29 + 581154 CCAACCCACCACTACTTTAGCTCCTCAAG i allSin1.KE696955 C 0 C 0 a score=1485.000000 s galGal6.chr28_NW_020109768v1_random 980 33 + 1519 at--agccgacccca--tacccacc-ccacagcccacc---------- s allMis1.JH731138 106437 37 - 208525 ATCCAGGAGAACCCAGGTGTCCACC-CCCCTGGCTGCA---------- i allMis1.JH731138 C 0 C 0 s allSin1.KE696955 285560 37 + 581154 ATCCAGGAGAACCCAGGTGTCCACC-CCCCTGGCTGCA---------- i allSin1.KE696955 C 0 C 0 s thaSir1.NW_013659314v1 42348 36 - 265807 -----AGAGA-------TGTCCTCCTCCTCAAGCCACATTGGTTGACC i thaSir1.NW_013659314v1 N 0 I 1 a score=-5120.000000 s galGal6.chr28_NW_020109768v1_random 1013 49 + 1519 ccacatccagccccatacccgc---ccc-------------acagcc----------gaccccacagcccc-------ccca s allMis1.JH731138 106474 79 - 208525 CCCCACTGGACTCTGCTCCTTC---CCCCATAACTGGGGATAGAACCCAGGTGTCTGGATCCCCCCACCCCACCCCCACCCC i allMis1.JH731138 C 0 C 0 s allSin1.KE696955 285597 79 + 581154 CCCCACTGGACTCTGCTCCTTC---CCCCATAACTGGGGATAGAACCCAGGTGTCCGGATCCCCCCGCCCCACCCCCACCCC i allSin1.KE696955 C 0 C 0 s pytBiv1.KE956904 37120 36 + 120628 ------CATCTGCTGACCGCTTACCCAC-----------ACACAACC-------------CTCCCA---------------- i pytBiv1.KE956904 N 0 I 11 s thaSir1.NW_013659314v1 42385 33 - 265807 ------CTAATTCAATTCCCTT---CGC-----------ATACAGCC-------------CTCCCA---------------- i thaSir1.NW_013659314v1 I 1 I 9 a score=97505.000000 s galGal6.chr28_NW_020109768v1_random 1062 88 + 1519 acTCACCTCTGCGCCTCAGTTGTGGGGTAGCGGAACGGCCCCGGCGCGGCCCCATA---GGGCGGGAACGGCAGATATggggggtacacct s allMis1.JH731138 106553 88 - 208525 ACTCACCTCTGTGCCTCTGGGGTGGGGTAGCGGTAAGGTCCCTG---AGGCCCATATGGAGGCGGGAACGGGAGGTACGGGGGATACATCT i allMis1.JH731138 C 0 C 0 s allSin1.KE696955 285676 88 + 581154 ACTCACCTCTGTGCCTCTGGGGTGGGGTAGCGGTAAGGTCCCTG---AGGCCCATATGGAGGCGGGAACGGGAGGTACGGGGGGTACATCT i allSin1.KE696955 C 0 C 0 s pytBiv1.KE956904 37167 88 + 120628 ATTTACCTCTGTGCCTCTGCTGTGGGGTAGCGGTAAGGTCCCTG---TGGCCCATATGGAGGCGGGAACGGGAGATATGGGGGATACATCT i pytBiv1.KE956904 I 11 N 0 s thaSir1.NW_013659314v1 42427 88 - 265807 ATTTACCTCTGTGCCTCTGCTGTGGGGTAGCGGTAAGGTCCCTG---TGGCCCATACGGAGGTGGGAACGGGAGATATGGGGGATACATCT i thaSir1.NW_013659314v1 I 9 C 0 s anoCar2.chr2 5669257 88 - 199619895 ACCTACCTCTGTGCCTCAGGTGTGGGGTAGCGGTAAGGTCCCTG---TGGCCCATAGGGAGGCGGGAACGGGAGGTATGGGGGATACATCT i anoCar2.chr2 N 0 C 0 a score=1000.000000 s galGal6.chr28_NW_020109768v1_random 1150 1 + 1519 g s allMis1.JH731138 106641 1 - 208525 G i allMis1.JH731138 C 0 C 0 s allSin1.KE696955 285764 1 + 581154 G i allSin1.KE696955 C 0 C 0 s thaSir1.NW_013659314v1 42515 1 - 265807 G i thaSir1.NW_013659314v1 C 0 N 0 s anoCar2.chr2 5669345 1 - 199619895 G i anoCar2.chr2 C 0 N 0 a score=2083.000000 s galGal6.chr28_NW_020109768v1_random 1151 13 + 1519 ggggggtgggggg s allMis1.JH731138 106642 13 - 208525 TGGGGGGGAGGGG i allMis1.JH731138 C 0 N 0 s allSin1.KE696955 285765 13 + 581154 TGGGGGGGGGGAT i allSin1.KE696955 C 0 C 0 a score=5.000000 s galGal6.chr28_NW_020109768v1_random 1164 60 + 1519 caccgAGCTCAGCACGACCCCCAACCCGgccccacacttatggggcagagccgCAACCCC s allSin1.KE696955 285778 56 + 581154 GACAGGGCATGGGGTG----TTAGGGGGACCCTAAAGTCACAGGGCCAGCTCAAAGCCCC i allSin1.KE696955 C 0 N 0