##maf version=1 scoring=roast.v3.3 a score=1500.000000 s galGal6.chrUn_NW_020109893v1 0 1 + 2462 g s apaVit1.KL391755 3770 1 - 9809 G i apaVit1.KL391755 N 0 C 0 s fulGla1.JJRN01016514 36016 1 - 36393 G i fulGla1.JJRN01016514 N 0 C 0 s opiHoa1.KK733739 129832 1 + 314300 G i opiHoa1.KK733739 N 0 C 0 s egrGar1.KK501877 18037 1 - 716523 g i egrGar1.KK501877 N 0 N 0 s mesUni1.KK821040 11296 1 - 120435 G i mesUni1.KK821040 N 0 I 1 a score=1691.000000 s galGal6.chrUn_NW_020109893v1 1 6 + 2462 tgggca s apaVit1.KL391755 3771 6 - 9809 TTGAAG i apaVit1.KL391755 C 0 C 0 s fulGla1.JJRN01016514 36017 6 - 36393 TGGAAG i fulGla1.JJRN01016514 C 0 C 0 s opiHoa1.KK733739 129833 6 + 314300 TTGAAG i opiHoa1.KK733739 C 0 C 0 s mesUni1.KK821040 11298 5 - 120435 -TGAAA i mesUni1.KK821040 I 1 C 0 s capCar1.KL359676 8781 5 + 10479 -TGGGT i capCar1.KL359676 N 0 I 4 s colStr1.JJRP01030861 16275 6 - 18806 TAGACG i colStr1.JJRP01030861 N 0 C 0 a score=190197.000000 s galGal6.chrUn_NW_020109893v1 7 125 + 2462 gagtgggagtacaggtggagttctcctctgtcccctcagTGGCAGCGAGGGATACTGAGAGGGTTGGGAGAACTCATCTGATAAATGCGTGGCTGAGAGGTCGGTGCCacggcaggaattct--gtt s apaVit1.KL391755 3777 123 - 9809 GATCAGGAGCACAGGTACTGTTTTCCTCAATCCCTTCAGGGGCAGGGAAGAACACTGAAAGGAATGGGAAAACACACGTGGTTAATGC--GGTTTAGAGCCTGGTGCCAACAgatgaatttt--gtt i apaVit1.KL391755 C 0 C 0 s fulGla1.JJRN01016514 36023 125 - 36393 GATCGGGAGCACAGGTGGTGTTTTCCTCAatcccttcagtggcagggaagaatGCTGAAGGGAACAGGAGAACTCATCGGATCAACACGTGGCTTAGGGGCTGGTGCCATTGGCagaatttt--ggc i fulGla1.JJRN01016514 C 0 C 0 s opiHoa1.KK733739 129839 125 + 314300 GATCAGGGGCACAGACAGTGCTTTCCTCAATCCCGTCAGTGGCAGGGAGGAAGATCAAAAGGAACAGGATCATTCACATGATTAACATGTGGCTCAGAGGCTGGTGCCATTGGTGGAATTTT--AGG i opiHoa1.KK733739 C 0 N 0 s carCri1.KK522561 16871 125 - 17819 GATTGGGAGCGcaggtagtgttttcctctaTCCCTTCAGTAGCAGGGAAGAATactagaaggaacaggaaagcCCATCTGATTAACACGTGGCTCAGAGGCTGGTGCCATGGGTggaatttt--ggc i carCri1.KK522561 N 0 C 0 s mesUni1.KK821040 11303 127 - 120435 GATTAGGAGCACAGGCAGTGTTTTCCTCAATCCCTTCAATGGCAGGGAAGAATACTGAAAGGTACAGGAAAACACACTTGTTTAACACATGACTCAGGGGCTGGTGCCATTGGtggaattttggggt i mesUni1.KK821040 C 0 C 0 s capCar1.KL359676 8790 125 + 10479 GGTTGGGAGCACAGGTAGTGCTTTCCTCAATCACTTTAGTGGCAGGAAAGAATACTGAAAGGAACAGGCAAACGCACCTGATTAACACATGGCTCAGAGACTGGTGCCATCAgcagaatttt--ggt i capCar1.KL359676 I 4 C 0 s colStr1.JJRP01030861 16281 124 - 18806 GCTCAGGGgcacaagtagtgttctcctCCATCCTCTCA-TGGCAGGGAAGGATACTGAATGAATAAGGAAAGCACAACTGATTAACAGATGGCTCAGAGACTGGTGCTACCAATgcagcttt--ggg i colStr1.JJRP01030861 C 0 C 0 a score=64646.000000 s galGal6.chrUn_NW_020109893v1 132 70 + 2462 ttttctgaccacggggcggtgtactctgtgctggg-ctgatggctgcaggtggatcccagctg-tgtga-agg- s apaVit1.KL391755 3900 72 - 9809 ttttctgatcATGGGGAGGTTTACATGGCACTGGGCCTGCTGGTGACAGCTGGAGTGCAGCTGCTCcca-aga- i apaVit1.KL391755 C 0 C 0 s fulGla1.JJRN01016514 36148 71 - 36393 ttttttgatcATGGGGAGGTTTACACAGAACTgggcctgctggggacagatgGAGTTC-GCTg-tctcacagg- i fulGla1.JJRN01016514 C 0 C 0 s carCri1.KK522561 16996 71 - 17819 ttctttgaCCATGGGGCGGTTTACACGGCACCAGGTCTGCTGATGACAGATGGagttcacctg-tctca-aag- i carCri1.KK522561 C 0 I 1 s mesUni1.KK821040 11430 71 - 120435 tttttttatcacGGGGAGGTTTAAAGGGTGCCAGGCCTTCTAGTGACAGTTGGAGTTCAGTTA-TCTCA-AAG- i mesUni1.KK821040 C 0 I 1 s capCar1.KL359676 8915 71 + 10479 ttctttgatcaTGGGGAGGTTTACACAGCACTGGGTCTGATTGCAATAGATGGATTTCAGCTG-TCTCA-AAG- i capCar1.KL359676 C 0 I 1 s colStr1.JJRP01030861 16405 69 - 18806 ttttttgaccaTGGTGAGGTTTTCATGATGCCAGGTTTG---GTGACAGatggagttcatctg-tctcC-AAAG i colStr1.JJRP01030861 C 0 C 0 a score=1219.000000 s galGal6.chrUn_NW_020109893v1 202 1 + 2462 g s apaVit1.KL391755 3972 1 - 9809 a i apaVit1.KL391755 C 0 C 0 s fulGla1.JJRN01016514 36219 1 - 36393 g i fulGla1.JJRN01016514 C 0 C 0 s pelCri1.KK472548 348 1 + 51606 a i pelCri1.KK472548 N 0 I 33 s carCri1.KK522561 17068 1 - 17819 g i carCri1.KK522561 I 1 C 0 s mesUni1.KK821040 11502 1 - 120435 G i mesUni1.KK821040 I 1 C 0 s capCar1.KL359676 8987 1 + 10479 G i capCar1.KL359676 I 1 C 0 s colStr1.JJRP01030861 16474 1 - 18806 G i colStr1.JJRP01030861 C 0 C 0 a score=36541.000000 s galGal6.chrUn_NW_020109893v1 203 31 + 2462 ggaagcggatctcagaccaggagctgg--gGGC s apaVit1.KL391755 3973 33 - 9809 ggaaaaggattcTTGCCCATGAGCTGGCAGGGC i apaVit1.KL391755 C 0 C 0 s fulGla1.JJRN01016514 36220 33 - 36393 ggaaaaggattctcgcGTATGAGTTGGCGGGGC i fulGla1.JJRN01016514 C 0 C 0 s carCri1.KK522561 17069 33 - 17819 ggaaaaggattcTAGCCCATGAGCTGGCAGGGC i carCri1.KK522561 C 0 C 0 s mesUni1.KK821040 11503 33 - 120435 GGAAAAGGATTCTTGCTCATGAGTTGGCCAGGC i mesUni1.KK821040 C 0 C 0 s capCar1.KL359676 8988 33 + 10479 TGAAAGGGATTCATGCTCATGAGCTGGTGGGGC i capCar1.KL359676 C 0 C 0 s colStr1.JJRP01030861 16475 33 - 18806 GGAGAAGGATACTTGAAAATGAGTTAGTAGGGC i colStr1.JJRP01030861 C 0 C 0 e pelCri1.KK472548 349 33 + 51606 I a score=39018.000000 s galGal6.chrUn_NW_020109893v1 234 19 + 2462 TCactgagagggctttaaa s apaVit1.KL391755 4006 19 - 9809 TCACCAAGAAGGCTTTAAA i apaVit1.KL391755 C 0 C 0 s fulGla1.JJRN01016514 36253 19 - 36393 TCATtgagagggctttaaa i fulGla1.JJRN01016514 C 0 C 0 s pelCri1.KK472548 382 19 + 51606 tcattgagagggctttaaa i pelCri1.KK472548 I 33 C 0 s carCri1.KK522561 17102 19 - 17819 TGATTGAGAAGGTTTTAAA i carCri1.KK522561 C 0 C 0 s mesUni1.KK821040 11536 19 - 120435 TCATTGAGAGCGCTTTAAA i mesUni1.KK821040 C 0 N 0 s capCar1.KL359676 9021 19 + 10479 TCATTgagagggctttaaa i capCar1.KL359676 C 0 C 0 s colStr1.JJRP01030861 16508 19 - 18806 Tcatagaaagggctttaaa i colStr1.JJRP01030861 C 0 C 0 a score=2100.000000 s galGal6.chrUn_NW_020109893v1 253 1 + 2462 c s apaVit1.KL391755 4025 1 - 9809 C i apaVit1.KL391755 C 0 N 0 s fulGla1.JJRN01016514 36272 1 - 36393 c i fulGla1.JJRN01016514 C 0 C 0 s pelCri1.KK472548 401 1 + 51606 c i pelCri1.KK472548 C 0 C 0 s carCri1.KK522561 17121 1 - 17819 C i carCri1.KK522561 C 0 C 0 s capCar1.KL359676 9040 1 + 10479 c i capCar1.KL359676 C 0 C 0 s colStr1.JJRP01030861 16527 1 - 18806 c i colStr1.JJRP01030861 C 0 C 0 a score=1365.000000 s galGal6.chrUn_NW_020109893v1 254 1 + 2462 t s fulGla1.JJRN01016514 36273 1 - 36393 t i fulGla1.JJRN01016514 C 0 C 0 s pelCri1.KK472548 402 1 + 51606 t i pelCri1.KK472548 C 0 C 0 s carCri1.KK522561 17122 1 - 17819 T i carCri1.KK522561 C 0 C 0 s capCar1.KL359676 9041 1 + 10479 t i capCar1.KL359676 C 0 C 0 s colStr1.JJRP01030861 16528 1 - 18806 t i colStr1.JJRP01030861 C 0 C 0 a score=-1467.000000 s galGal6.chrUn_NW_020109893v1 255 2 + 2462 g-----g s cotJap2.chr1 140438005 7 + 175656249 AGATATG i cotJap2.chr1 N 0 C 0 s fulGla1.JJRN01016514 36274 2 - 36393 -----ag i fulGla1.JJRN01016514 C 0 N 0 s pelCri1.KK472548 403 2 + 51606 -----ag i pelCri1.KK472548 C 0 N 0 s carCri1.KK522561 17123 2 - 17819 -----AG i carCri1.KK522561 C 0 N 0 s capCar1.KL359676 9042 2 + 10479 -----ag i capCar1.KL359676 C 0 C 0 e colStr1.JJRP01030861 16529 0 - 18806 C a score=-137.000000 s galGal6.chrUn_NW_020109893v1 257 1 + 2462 c s cotJap2.chr1 140438012 1 + 175656249 A i cotJap2.chr1 C 0 C 0 s picPub1.KL215843 226259 1 + 464298 A i picPub1.KL215843 N 0 C 0 e colStr1.JJRP01030861 16529 0 - 18806 C e capCar1.KL359676 9044 0 + 10479 C a score=5138.000000 s galGal6.chrUn_NW_020109893v1 258 20 + 2462 AGCCTTTTGTGGACAGCGTG s cotJap2.chr1 140438013 20 + 175656249 AGGGTGTAGGGAACAAAATG i cotJap2.chr1 C 0 C 0 s merNub1.KK698134 38895 20 - 39044 aggTTTCAAGGGGAAAAGTG i merNub1.KK698134 N 0 C 0 s capCar1.KL359676 9044 18 + 10479 --gttagaagggggaagggg i capCar1.KL359676 C 0 C 0 s colStr1.JJRP01030861 16529 20 - 18806 agtttttaagggggaagggg i colStr1.JJRP01030861 C 0 C 0 s picPub1.KL215843 226260 17 + 464298 ---TTCAAGGGGAAGAAGGG i picPub1.KL215843 C 0 C 0 a score=-31521.000000 s galGal6.chrUn_NW_020109893v1 278 54 + 2462 ---------------------AGACATGGAGGGGT----------------------GACAGTCTGTGGGGCGCTCCaactggggat-------------g--------tgtgcagtg s cotJap2.chr1 140438033 69 + 175656249 ---------------------AGAGCAACTGGGGT----------------TGAGTGGATAGTTTGAG----GCTCAAAACAGAGCTTGATGGGTGAAAAG--------GGTGGAAGG i cotJap2.chr1 C 0 C 0 s merNub1.KK698134 38915 73 - 39044 ---------------------ATAAAACTGGGCCTGCTAAAGTTTAGCCT-AAGGGTGGCAGGCCGTG----------GTTGGGAAT-------------GAAGTCGTTAGCCCTGCT i merNub1.KK698134 C 0 C 0 s capCar1.KL359676 9062 34 + 10479 ---------------------ataaaaCTAGGGCT------------------------CAG------------------TAGAGAT-------------G--------AGCCCAGGG i capCar1.KL359676 C 0 C 0 s colStr1.JJRP01030861 16549 65 - 18806 ---------------------ataaaCCCAGGCCCATTAGAGTTGAGTCTATGTGGGGCTAGTCAGTG-----------CTGGGAGT-------------G--------AATTCTGTG i colStr1.JJRP01030861 C 0 N 0 s picPub1.KL215843 226277 44 + 464298 ---------------------GTAAAAACAGGCTT----------------GGCGAGAACAG----------------GCCTGGAAT-------------G--------CTTGAGAGG i picPub1.KL215843 C 0 C 0 s tinGut2.KL887887 3675 45 - 222568 AGGTATGAAGGAGGAGGGGGGATAAAACTGGGATT-------------------------------------------GCTAGGGAT-------------G----------------- i tinGut2.KL887887 N 0 I 1 a score=-10951.000000 s galGal6.chrUn_NW_020109893v1 332 21 + 2462 --ctc---tgtgcgTGTCAC---CACTgg s cotJap2.chr1 140438102 21 + 175656249 --CTA---GACTCTTTTTAG---TAGTGT i cotJap2.chr1 C 0 C 0 s merNub1.KK698134 38988 18 - 39044 --CAA------GTGCGTCTG---TGCTAA i merNub1.KK698134 C 0 C 0 s capCar1.KL359676 9096 18 + 10479 --TCA------GTGTGCCAA---TGTTGG i capCar1.KL359676 C 0 C 0 s picPub1.KL215843 226321 20 + 464298 ---------CGGTGTGCCAGCTCCACTGG i picPub1.KL215843 C 0 N 0 s tinGut2.KL887887 3721 21 - 222568 CCCTAGGGGAGGCATACCAG---G----- i tinGut2.KL887887 I 1 C 0 a score=165.000000 s galGal6.chrUn_NW_020109893v1 353 2 + 2462 gt s cotJap2.chr1 140438123 2 + 175656249 GT i cotJap2.chr1 C 0 C 0 s merNub1.KK698134 39006 2 - 39044 AG i merNub1.KK698134 C 0 I 10 s capCar1.KL359676 9114 2 + 10479 GG i capCar1.KL359676 C 0 C 0 s tinGut2.KL887887 3742 2 - 222568 GT i tinGut2.KL887887 C 0 I 7 a score=-3264.000000 s galGal6.chrUn_NW_020109893v1 355 11 + 2462 gccctcagtac s cotJap2.chr1 140438125 11 + 175656249 GGAGACTGtac i cotJap2.chr1 C 0 C 0 s merNub1.KK698134 39018 11 - 39044 GACCTCAGTAC i merNub1.KK698134 I 10 N 0 s phaCar1.JMFI01073891 34422 3 + 48791 --------TTC i phaCar1.JMFI01073891 N 0 C 0 s capCar1.KL359676 9116 8 + 10479 ---GTGAAATC i capCar1.KL359676 C 0 C 0 s tinGut2.KL887887 3751 10 - 222568 AAGCTCAGTA- i tinGut2.KL887887 I 7 C 0 a score=-11873.000000 s galGal6.chrUn_NW_020109893v1 366 29 + 2462 ca----------ccaccca-----------cttggggaccacaaatacca--------- s cotJap2.chr1 140438136 39 + 175656249 aaggggaaacagccaaaaa-----------ctggagcataggaagttccg--------- i cotJap2.chr1 C 0 C 0 s phaCar1.JMFI01073891 34425 40 + 48791 ----------TTCAAGCCATTCCACATGGTGATGGGCACAATGAACTGCC--------- i phaCar1.JMFI01073891 C 0 C 0 s capCar1.KL359676 9124 20 + 10479 ----------TGtagccca--------------------gctgaagtgca--------- i capCar1.KL359676 C 0 C 0 s tinGut2.KL887887 3761 25 - 222568 --------------ACCCA--------------------GCTGAAGTGCATCTACACCA i tinGut2.KL887887 C 0 N 0 a score=-5806.000000 s galGal6.chrUn_NW_020109893v1 395 60 + 2462 catgagg--agacg---acatcacag-catgctgtccaca--agaggaacagacag--------cagctctccggc s cotJap2.chr1 140438175 56 + 175656249 catgaat--aTGCGCAAGTGTCACAGTCCTTTAGTTCAAAC-AAATGAACA-------------CAGctc----ac i cotJap2.chr1 C 0 C 0 s phaCar1.JMFI01073891 34465 57 + 48791 CTTGAAC---TGCA-------CAcag-catgaggaacaagcaagaggagctAGAAGCTTTGGTCCAGT-------- i phaCar1.JMFI01073891 C 0 C 0 s capCar1.KL359676 9144 60 + 10479 tgTACACCGATGCG-------TACAG-CATGGGCaataagcaggaggagctggaagccattgtgcagc-------- i capCar1.KL359676 C 0 N 0 a score=-61.000000 s galGal6.chrUn_NW_020109893v1 455 3 + 2462 cac s cotJap2.chr1 140438231 3 + 175656249 tat i cotJap2.chr1 C 0 C 0 s phaCar1.JMFI01073891 34522 3 + 48791 CCC i phaCar1.JMFI01073891 C 0 N 0 a score=250.000000 s galGal6.chrUn_NW_020109893v1 458 14 + 2462 ttcttttct--cctct s cotJap2.chr1 140438234 16 + 175656249 tttctttttgagctct i cotJap2.chr1 C 0 C 0 a score=-6987.000000 s galGal6.chrUn_NW_020109893v1 472 110 + 2462 gcactctcactgtccccaagctgctcctg--------------------------------cctc-----------atggcaccaatgcTGGTGgccctca--ttctc-----ggtgagtga-caatgggacatggt-gccacagggg------------ttggtggccctgtg s cotJap2.chr1 140438250 90 + 175656249 gca--------------gagaggggcCTG-------------------------------------------------GGTGCC----CTAGTGGATGtcaggttggc-----catgagccagcagtgtgccctggtggccaaaaagg------------ccaatggcactctg i cotJap2.chr1 C 0 N 0 s anaPla1.KB743748 63028 155 - 387821 ----------------GGAGtcagtcctgaagggcagaggggtccaggaaggctggatgCTCCTCAAGAAGTCAAGAAGGCACAGAAGCAGGCTGTCCTCA--TGTGCTGTAAGATGagctg-gaggggaagaagaTTATCATGGATGAACAGGGAACTTTTGATGAGtgtctg i anaPla1.KB743748 N 0 C 0 a score=271.000000 s galGal6.chrUn_NW_020109893v1 582 106 + 2462 tgggaccagga--ccatgtcccttgcaggttggtggctggtggctgcgagcagggcacag---------caacatgagtatggggagaatggggacggAGGGAGTGGAGCGAGGGCA s anaPla1.KB743748 63183 115 - 387821 ggagaaaaagagttTATGCCCAGTGGAAGAAGGTG--CAGTCAACTCAGGGAGAGTACAAGGAAGTTGCCAGcatatgcacagaaaaaatcaggaaggccAAAGCCCAGCATGAACA i anaPla1.KB743748 C 0 N 0