##maf version=1 scoring=roast.v3.3 a score=86.000000 s galGal6.chrUn_NW_020109910v1 256 3 + 2948 ctc s cotJap2.chrZ 58613571 3 - 67000979 CGC i cotJap2.chrZ N 0 I 11 a score=0.000000 s galGal6.chrUn_NW_020109910v1 259 11 + 2948 tattctcagcc e cotJap2.chrZ 58613574 11 - 67000979 I a score=-534.000000 s galGal6.chrUn_NW_020109910v1 270 172 + 2948 tctctgctttaccctctttctcatcttccttcccagcgccccccggcctgctctggagcttcccagtgcaccaagtggtccctgt--gaatgtgctgcggat---gcactccgcgtgtcctacctcactcaggagggcgtcgagctcttccctgctggacatggggtcgctgctgg---c s cotJap2.chrZ 58613585 153 - 67000979 GAGCTCCGCGAGCCG----------GTCCGTTCCACCAGCCTCCAGCAG---CCGGTGCTC----GTGCATCAAGAGACCGCTGCAGGGCTGTCCCTCGTACAGAGCACTGCTCGCTTCTGCCGCCAGCTGGG----------GCTCTGCCCTCCCCGTCAAGCTGCCTATGCTGGGCAC i cotJap2.chrZ I 11 C 0 a score=-128.000000 s galGal6.chrUn_NW_020109910v1 442 1 + 2948 t s cotJap2.chrZ 58613738 1 - 67000979 G i cotJap2.chrZ C 0 C 0 s melGal5.chr3 92969502 1 + 93210757 G i melGal5.chr3 N 0 I 242 a score=-986.000000 s galGal6.chrUn_NW_020109910v1 443 239 + 2948 gagccattctctagctgtgggaggagatgcgtcacccctacctctggccgtgggctcctttcggtcctgcacggaccggaggccggggtc----gcagcccctgggctgtgctcttcctcctgcacgacagcttcagcatcgcctccatctcgcgctgccgcgtccctccccagcggccactccttgtccctcggcctcctctccctctcccccccccccccctctctctg-------ttttggtgttcc s cotJap2.chrZ 58613739 196 - 67000979 GAGC---------------GGACCCGGAGCGCTTCCCGT-CCTCCGGCAGCGGCCGACCGGGTCTCCCAGAAGGGCAGCAGGACGGCACCTCCGGCGGCTCCAAAGTTG-------------GCCCCGCAGCT-CGGCAGAGCC--------------CCGCGGCAGAGCAGAGCGGACAGTCCC----------CTCCCTGTCCCTCATGCCACCCCTGTGTTGAttcagcccaggatactgttggcct i cotJap2.chrZ C 0 C 0 e melGal5.chr3 92969503 242 + 93210757 I a score=-1777.000000 s galGal6.chrUn_NW_020109910v1 682 9 + 2948 ---tccaggc-------------gc s cotJap2.chrZ 58613935 22 - 67000979 ---tccaggctgcaccGTGTCGAGT i cotJap2.chrZ C 0 I 55 s melGal5.chr3 92969745 9 + 93210757 tgcattagg---------------- i melGal5.chr3 I 242 C 0 a score=-465.000000 s galGal6.chrUn_NW_020109910v1 691 20 + 2948 ctttacccagcaccgcctgg s melGal5.chr3 92969754 20 + 93210757 tATTAGAAAGGGGGAATTGA i melGal5.chr3 C 0 I 30 e cotJap2.chrZ 58613957 55 - 67000979 I a score=0.000000 s galGal6.chrUn_NW_020109910v1 711 33 + 2948 gttcCCCGCACCGGTACCGGCCCTGGTGCGCCT e melGal5.chr3 92969774 30 + 93210757 I e cotJap2.chrZ 58613957 55 - 67000979 I a score=251.000000 s galGal6.chrUn_NW_020109910v1 744 4 + 2948 CTCT s melGal5.chr3 92969804 4 + 93210757 CTTT i melGal5.chr3 I 30 C 0 e cotJap2.chrZ 58613957 55 - 67000979 I a score=23.000000 s galGal6.chrUn_NW_020109910v1 748 7 + 2948 CAGACCt s cotJap2.chrZ 58614012 7 - 67000979 GTGAACA i cotJap2.chrZ I 55 I 7 s melGal5.chr3 92969808 7 + 93210757 GTGACTT i melGal5.chr3 C 0 C 0 a score=-438.000000 s galGal6.chrUn_NW_020109910v1 755 7 + 2948 cactgaa s melGal5.chr3 92969815 7 + 93210757 GTCCTCG i melGal5.chr3 C 0 C 0 e cotJap2.chrZ 58614019 7 - 67000979 I a score=-2850.000000 s galGal6.chrUn_NW_020109910v1 762 68 + 2948 gggctgactgccg---ctggggagggatt-------tgtggttggaaatccctccttggtgaagccttcCCCCGcaga s cotJap2.chrZ 58614026 72 - 67000979 G-----ACTGCCAGATCTGAAGAAGTAGA-GCACAATGTATTTGGTAACTTGTCCTTAGAAATAACTGATGCGACAAA i cotJap2.chrZ I 7 N 0 s melGal5.chr3 92969822 55 + 93210757 GGAATAGCTGACG----TGAAAAAGTAGAAACACCACGTG-TTGGTAA------CATGGGG-----------TGCAG- i melGal5.chr3 C 0 C 0 a score=14815.000000 s galGal6.chrUn_NW_020109910v1 830 320 + 2948 cctggaatcttctgatacgggTGAGcaatcctcttccctttctttatagcACCTCTCTACTGTGC-AGGTAGTATGGGTATAGCATGATAGACTGGAAAGCATATCGTAGGGGCTATTCTGTCTGCATAAGagaccctcagcaaaagaaaagcagacttaacaaacatccgagaagccagggcctcagcACGAGGAT----TGCCTCGCTCCGGTGGGTAGGTTGgggtgcaacaggcaggcatggagatactcccctctctcctccttccaagctTATCCCTATGCAAGGAcaagcagatgtgcagaaacGGGGACTGAGTGTG s melGal5.chr3 92969877 309 + 93210757 --------TTGCTGAATTGtgtgattaattcttgcttgcaaaactgcaacagtttttaaatgttccaaatAGTATAGGTATAGTATTATGGACCAGAAAGCATTT----AGGGCTGTTCTGTTTGGATAAGAGACCCTCAGCAAAAGAA---CAGACTTAACAAACATCAAAGCAGccagggcctctacacaaggctggCTTGCCTCACTCTG-TGGGTAGGCTGGGATGCAAAAGGCAGGCATCAAGATGCTCCCCCCTGTCCTCCTTCCAAGCTTACCTCTATGCAAGGCCGAGCAGATGTCCAGAAACAACGACCGAGTGTT i melGal5.chr3 C 0 C 0 a score=853.000000 s galGal6.chrUn_NW_020109910v1 1150 9 + 2948 GAACGAGCA s melGal5.chr3 92970186 9 + 93210757 GAGTGAGCG i melGal5.chr3 C 0 C 0 s egrGar1.KK502394 5914009 9 + 6298149 GAgggaaaa i egrGar1.KK502394 N 0 I 111 a score=7650.000000 s galGal6.chrUn_NW_020109910v1 1159 124 + 2948 CATGTGAGAAGTTAGCTAATTAGCAGTATGTGCTTAGCTAGCAGTCATTTGTGTTGATCCAGTATCCGTGTGTTTAGCTGAGCGTCAGGAAGATGGTGAACCTGGAGTACTCAGCCAATGggga s melGal5.chr3 92970195 124 + 93210757 AGTGTGAGAACTGAACTAATTAGTGATATATGCTTAGCTAGCAAAAAATTATGGTTAGCCAGTATCTGTGTGTTCAATTGAGCGTCAGGAAGgttgtgaacctgcagtactcagccaatgagga i melGal5.chr3 C 0 C 0 e egrGar1.KK502394 5914018 111 + 6298149 I a score=29.000000 s galGal6.chrUn_NW_020109910v1 1283 1 + 2948 a s melGal5.chr3 92970319 1 + 93210757 a i melGal5.chr3 C 0 C 0 s egrGar1.KK502394 5914129 1 + 6298149 G i egrGar1.KK502394 I 111 I 73 a score=3113.000000 s galGal6.chrUn_NW_020109910v1 1284 60 + 2948 ccaggggagaaagagacgAGCGTCGAGTCAT-GGGCAGCAACCATGTAAGGCTG-TTTCTGC s melGal5.chr3 92970320 62 + 93210757 ccaggggagaaagagagaagcgtcgagtaatagggcataaaagatgtaacactgttttctgc i melGal5.chr3 C 0 C 0 e egrGar1.KK502394 5914130 73 + 6298149 I a score=177.000000 s galGal6.chrUn_NW_020109910v1 1344 4 + 2948 GAGC s melGal5.chr3 92970382 4 + 93210757 aagc i melGal5.chr3 C 0 C 0 s egrGar1.KK502394 5914203 4 + 6298149 TTGC i egrGar1.KK502394 I 73 N 0 a score=2278.000000 s galGal6.chrUn_NW_020109910v1 1348 69 + 2948 ------------------CCCGCCGCTGCCATGGCAAACAGAGTCTGCTCTATGAGAGATACCGTCCTGGTGGGTTG-TGGGATATTT s melGal5.chr3 92970386 88 + 93210757 tctcctgcttgcaggaggcccaacattgcaattgtgaataaaatctgctttatcagagatatcgccctgataaattattttgatattt i melGal5.chr3 C 0 N 0