##maf version=1 scoring=roast.v3.3 a score=246.000000 s galGal6.chrUn_NW_020109943v1 34 6 + 4766 CCACat s melGal5.chr19 41632 6 + 10292962 CCCCAC i melGal5.chr19 N 0 I 10 a score=0.000000 s galGal6.chrUn_NW_020109943v1 40 10 + 4766 agcaccccat e melGal5.chr19 41638 10 + 10292962 I a score=-45.000000 s galGal6.chrUn_NW_020109943v1 50 3 + 4766 gtc s melGal5.chr19 41648 3 + 10292962 AGC i melGal5.chr19 I 10 I 93 a score=0.000000 s galGal6.chrUn_NW_020109943v1 53 93 + 4766 ccctctacagccctaagaccctccctacagtcccccagcccctaaagcccaatctcccctTATAGctccccacagacccacactggCCCTAGA e melGal5.chr19 41651 93 + 10292962 I a score=-125.000000 s galGal6.chrUn_NW_020109943v1 146 1 + 4766 c s melGal5.chr19 41744 1 + 10292962 g i melGal5.chr19 I 93 I 105 a score=0.000000 s galGal6.chrUn_NW_020109943v1 147 97 + 4766 tccctccagagccccccacaCTCTCCCATATCCAGCCTCATATCCCCCTAGAACCCTTCTAGACTCCATATCTCCCCTatatccccacagacaccct e melGal5.chr19 41745 105 + 10292962 I a score=-31.000000 s galGal6.chrUn_NW_020109943v1 244 1 + 4766 a s melGal5.chr19 41850 1 + 10292962 g i melGal5.chr19 I 105 I 41 a score=0.000000 s galGal6.chrUn_NW_020109943v1 245 53 + 4766 tatcctccctcaggcccccacaatctcctacagcacaacatcctGCCCTagag e melGal5.chr19 41851 41 + 10292962 I a score=-114.000000 s galGal6.chrUn_NW_020109943v1 298 1 + 4766 c s melGal5.chr19 41892 1 + 10292962 a i melGal5.chr19 I 41 I 167 a score=0.000000 s galGal6.chrUn_NW_020109943v1 299 182 + 4766 ccccccaacccctagcACCCACAACCCTCCCACATGTTGCCACAAACCCCTAAGCCACATATCCCCCTCGAACACACCTATAGCCCTTACAGACCCCTCATAGAACCGTggagctcctcccaaagccccctacagacccatatcacccctatacccccacagccccctagagaaccaaatcc e melGal5.chr19 41893 167 + 10292962 I a score=-31.000000 s galGal6.chrUn_NW_020109943v1 481 1 + 4766 c s melGal5.chr19 42060 1 + 10292962 T i melGal5.chr19 I 167 I 11 a score=0.000000 s galGal6.chrUn_NW_020109943v1 482 11 + 4766 cctatatcccc e melGal5.chr19 42061 11 + 10292962 I a score=-114.000000 s galGal6.chrUn_NW_020109943v1 493 1 + 4766 a s melGal5.chr19 42072 1 + 10292962 C i melGal5.chr19 I 11 I 22 a score=0.000000 s galGal6.chrUn_NW_020109943v1 494 22 + 4766 tatagccctaAAACACTCCCTA e melGal5.chr19 42073 22 + 10292962 I a score=-360.000000 s galGal6.chrUn_NW_020109943v1 516 3 + 4766 AAG s melGal5.chr19 42095 3 + 10292962 TTT i melGal5.chr19 I 22 I 25 a score=0.000000 s galGal6.chrUn_NW_020109943v1 519 21 + 4766 ACTGCAGCACCctagagcccc e melGal5.chr19 42098 25 + 10292962 I a score=91.000000 s galGal6.chrUn_NW_020109943v1 540 1 + 4766 a s melGal5.chr19 42123 1 + 10292962 a i melGal5.chr19 I 25 I 15 a score=0.000000 s galGal6.chrUn_NW_020109943v1 541 18 + 4766 tatcccccaatagcTGCC e melGal5.chr19 42124 15 + 10292962 I a score=140.000000 s galGal6.chrUn_NW_020109943v1 559 11 + 4766 CACAGATCCCT s melGal5.chr19 42139 11 + 10292962 TTCTGATCGTT i melGal5.chr19 I 15 I 150 a score=0.000000 s galGal6.chrUn_NW_020109943v1 570 146 + 4766 AGATCCCAACCACAGccccctcttttcccatataccccaataccccttctacagtcccccacagctttccagagccccatagcccctaGAGACACAATTAAGCTCCTTAAAGCCCCACACACCCATACAGCCACCCTAGCCTCATA e melGal5.chr19 42150 150 + 10292962 I a score=91.000000 s galGal6.chrUn_NW_020109943v1 716 1 + 4766 T s melGal5.chr19 42300 1 + 10292962 T i melGal5.chr19 I 150 N 0 a score=-33.000000 s galGal6.chrUn_NW_020109943v1 742 5 + 4766 tatcc s pelSin1.JH205571 699218 5 + 1052620 tgctt i pelSin1.JH205571 N 0 I 41 a score=0.000000 s galGal6.chrUn_NW_020109943v1 747 37 + 4766 ctctgccccctaagccccgatagccccacatccctcc e pelSin1.JH205571 699223 41 + 1052620 I a score=592.000000 s galGal6.chrUn_NW_020109943v1 784 13 + 4766 cgatagcccccac s pelSin1.JH205571 699264 13 + 1052620 agctgacccccac i pelSin1.JH205571 I 41 I 20 a score=0.000000 s galGal6.chrUn_NW_020109943v1 797 27 + 4766 agaacactacagccccatatcccccaa e pelSin1.JH205571 699277 20 + 1052620 I a score=-513.000000 s galGal6.chrUn_NW_020109943v1 824 451 + 4766 tatccaccccta-taacccactacagccccctgtcgccccaaagccctaccctataccccatacagtcccatttct-----ccctctggcctccccatggcccctcacaccctccctggattcccaacacagccccctacagccccatctcctcctacaacccacgcacagccctacatccctctaTAGCACCCCTGTgggccccacatccctccatccccctctattcccaaaacACACCAAT---ATCCCCTCATCCCTCgagatccccacacagcacattacagacccatatcctcccacatc---ccccaagagcccccaaagcccctcagctctTACACTgccaccacatctcccccactgcccctacacccacagaccacctcagccGGGGGCACCgcaagcagagctgggctcGGGTTCCAGGCCCTAAGGGCAGCAGCGCTACAGCGGGGGGCCC s pelSin1.JH205571 699297 404 + 1052620 tctctgcccctcctgggTCAGCCCAACTCCTTGGGACCCCAAtgctc----ccttccccagcaccttccctgATTTGGGAGCATGCAGGTGACCCCCAAGTAGCTCTGGCCCTACTGTTATTC-----------------AGCTCGGTCTCTGACCGAGctccccagcaatctctgaacccctctccctctctctgggggtcccccaatctctgaactcc-------tcccacgtctctccaatctgaccccctctTTCCCCTTGCTCC------------------------AGGCTCCCCAATCTGACTGCTGTGCCCCCCAGGGGTCCTCTGATCTCTGATTCCT------TCTCCCCGAGTCCCCTTGATCTCTCA-CCCCCCTTTTCCGGGTTCATTGCAGGAGCTCCTGGACAGCACCCACATGTCATCCCGGCACCACATCCAGAGCCTGGTGAAA i pelSin1.JH205571 I 20 I 17 a score=0.000000 s galGal6.chrUn_NW_020109943v1 1275 17 + 4766 CGactccttcagccgcc e pelSin1.JH205571 699701 17 + 1052620 I a score=-14.000000 s galGal6.chrUn_NW_020109943v1 1292 2 + 4766 cc s pelSin1.JH205571 699718 2 + 1052620 CA i pelSin1.JH205571 I 17 I 35 a score=0.000000 s galGal6.chrUn_NW_020109943v1 1294 56 + 4766 aaatccccgcatcccacggcgaaggggacggccacgggctgccgtctgaggggaca e pelSin1.JH205571 699720 35 + 1052620 I a score=100.000000 s galGal6.chrUn_NW_020109943v1 1350 1 + 4766 g s pelSin1.JH205571 699755 1 + 1052620 G i pelSin1.JH205571 I 35 I 19 a score=0.000000 s galGal6.chrUn_NW_020109943v1 1351 19 + 4766 ctgggcgaTTCCAAGCCGG e pelSin1.JH205571 699756 19 + 1052620 I a score=91.000000 s galGal6.chrUn_NW_020109943v1 1370 1 + 4766 T s pelSin1.JH205571 699775 1 + 1052620 T i pelSin1.JH205571 I 19 I 37 a score=0.000000 s galGal6.chrUn_NW_020109943v1 1371 70 + 4766 TGCCAACGGCGCGCTCTGCCCCTCAGCTGATTGGagcggcggcgctgccgctcaCCAATCAGAGGCCAGG e pelSin1.JH205571 699776 37 + 1052620 I a score=-145.000000 s galGal6.chrUn_NW_020109943v1 1441 2 + 4766 GG s pelSin1.JH205571 699813 2 + 1052620 at i pelSin1.JH205571 I 37 I 26 a score=0.000000 s galGal6.chrUn_NW_020109943v1 1443 25 + 4766 CGGGCCAGAAATGCCGTTGacaatg e pelSin1.JH205571 699815 26 + 1052620 I a score=70.000000 s galGal6.chrUn_NW_020109943v1 1468 9 + 4766 agaggccag s pelSin1.JH205571 699841 9 + 1052620 AGGGGTTCT i pelSin1.JH205571 I 26 I 173 a score=0.000000 s galGal6.chrUn_NW_020109943v1 1477 1 + 4766 c e pelSin1.JH205571 699850 173 + 1052620 I a score=491.000000 s galGal6.chrUn_NW_020109943v1 1478 5 + 4766 agggg s melGal5.chr6 47756488 5 + 50680202 agggg i melGal5.chr6 N 0 I 496 e pelSin1.JH205571 699850 173 + 1052620 I a score=0.000000 s galGal6.chrUn_NW_020109943v1 1483 184 + 4766 CGGGATGGAACTGCCGAtcaccaatgagaggccaccgggggtgggtcagagctgcttctgaccaatgagaggccagcaagGGCGGGATcgagctgccgctgaccaatgagaggccggcacGGGCCTGCAccgagctgggagcagagcggacACCCTCAAAGCTGCGGCAGCGACAGGAAGTGGT e pelSin1.JH205571 699850 173 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=91.000000 s galGal6.chrUn_NW_020109943v1 1667 1 + 4766 T s pelSin1.JH205571 700023 1 + 1052620 T i pelSin1.JH205571 I 173 I 118 e melGal5.chr6 47756493 496 + 50680202 I a score=0.000000 s galGal6.chrUn_NW_020109943v1 1668 84 + 4766 CCAAGAAGCAAAGGATGGCAGCGAGGTGCTGCCGGGAGCAGCAAAAATGCGGTGAGGCTCTCCCTGAAGCACCACAGCGGTTTG e pelSin1.JH205571 700024 118 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=551.000000 s galGal6.chrUn_NW_020109943v1 1752 7 + 4766 TTTGCCC s opiHoa1.KK735251 413346 7 - 896458 CTTGCCC i opiHoa1.KK735251 N 0 C 0 e pelSin1.JH205571 700024 118 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=29.000000 s galGal6.chrUn_NW_020109943v1 1759 1 + 4766 A s opiHoa1.KK735251 413353 1 - 896458 G i opiHoa1.KK735251 C 0 N 0 s pelCri1.KK491207 6186 1 + 7970 A i pelCri1.KK491207 N 0 C 0 e pelSin1.JH205571 700024 118 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=-150.000000 s galGal6.chrUn_NW_020109943v1 1760 1 + 4766 C s pelCri1.KK491207 6187 1 + 7970 G i pelCri1.KK491207 C 0 N 0 s pelSin1.JH205571 700142 1 + 1052620 c i pelSin1.JH205571 I 118 I 57 e melGal5.chr6 47756493 496 + 50680202 I a score=0.000000 s galGal6.chrUn_NW_020109943v1 1761 50 + 4766 AGACCACACGCGTGTGTGGCCCCATCCCTGCGTGCAAccacatgcacgca e pelSin1.JH205571 700143 57 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=-467.000000 s galGal6.chrUn_NW_020109943v1 1811 19 + 4766 caca-catgcaaCCCCATcc s pelSin1.JH205571 700200 14 + 1052620 TACAGGATGGga------cc i pelSin1.JH205571 I 57 I 37 e melGal5.chr6 47756493 496 + 50680202 I a score=0.000000 s galGal6.chrUn_NW_020109943v1 1830 37 + 4766 tgttgcacagcagtgcacgCGCAAAGACGCgtgcagc e pelSin1.JH205571 700214 37 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=35.000000 s galGal6.chrUn_NW_020109943v1 1867 4 + 4766 ctca s pelSin1.JH205571 700251 4 + 1052620 ctgg i pelSin1.JH205571 I 37 I 23 e melGal5.chr6 47756493 496 + 50680202 I a score=0.000000 s galGal6.chrUn_NW_020109943v1 1871 20 + 4766 tctgcagctccacaggcagg e pelSin1.JH205571 700255 23 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=91.000000 s galGal6.chrUn_NW_020109943v1 1891 1 + 4766 a s pelSin1.JH205571 700278 1 + 1052620 a i pelSin1.JH205571 I 23 I 57 e melGal5.chr6 47756493 496 + 50680202 I a score=0.000000 s galGal6.chrUn_NW_020109943v1 1892 37 + 4766 ggagacgggCCGAGGAGAGCGCTCCCTCGGAtgaaag e pelSin1.JH205571 700279 57 + 1052620 I e melGal5.chr6 47756493 496 + 50680202 I a score=196.000000 s galGal6.chrUn_NW_020109943v1 1929 29 + 4766 gcagtgggc------agccatGGCAAAGGCTGAGG s melGal5.chr6 47756989 34 + 50680202 AGAGCTGGCTTCCTGAGACGTAGAAAAAGCTGAG- i melGal5.chr6 I 496 C 0 e pelSin1.JH205571 700279 57 + 1052620 I a score=-951.000000 s galGal6.chrUn_NW_020109943v1 1958 1 + 4766 -C s melGal5.chr6 47757023 1 + 50680202 -T i melGal5.chr6 C 0 C 0 s pelSin1.JH205571 700336 1 + 1052620 a- i pelSin1.JH205571 I 57 I 141 a score=2414.000000 s galGal6.chrUn_NW_020109943v1 1959 120 + 4766 GCTCAGTGAGAGCTTTGCCTCGGTCTTTGCAGGTGGTCGGA--------------------CCTGCAGCCCGACttacagaagaagatgaggagttc---cccagcaggaagccacaaacccggcaggaacctgcaggggaat s melGal5.chr6 47757024 142 + 50680202 ACTCAATGAGAGCTTTGCCTCGGTCTTCACAGGTGGTCAGGCTTGCCGTGTCTGCCAGGACCCTGCAGCTCTAGGTGTGGGTG-AGAGGAGCAGATTGCatcccactgtaacagtggaacaagtcTGAGACCTCCTTGGGAAA i melGal5.chr6 C 0 C 0 e pelSin1.JH205571 700337 141 + 1052620 I a score=-331.000000 s galGal6.chrUn_NW_020109943v1 2079 4 + 4766 cgca s melGal5.chr6 47757166 4 + 50680202 CTGA i melGal5.chr6 C 0 C 0 s pelSin1.JH205571 700478 4 + 1052620 tgtg i pelSin1.JH205571 I 141 I 10 a score=253.000000 s galGal6.chrUn_NW_020109943v1 2083 13 + 4766 gcatgtgtgggtg s melGal5.chr6 47757170 13 + 50680202 ATGTATGTAAGTC i melGal5.chr6 C 0 C 0 e pelSin1.JH205571 700482 10 + 1052620 I a score=-3973.000000 s galGal6.chrUn_NW_020109943v1 2096 79 + 4766 cccagg-----aggaaatgcgccccagcgtctgagcagcgcctggccatggagtgctgcgg-----cccaagaacagcgctattctgcc s melGal5.chr6 47757183 76 + 50680202 CACGGGGCCACATGACATGCAGTCAAAGGTTCCGAGAGAGAc--------ggctgatgtgg-----ttgctgaaCCGCCCTCCAtctta i melGal5.chr6 C 0 C 0 s pelSin1.JH205571 700492 84 + 1052620 ctcagG-----TGGATCTGGTCCCCCTGTTCTCTCTAGAATTAGCCCATTGATTCCCTCTGTTcccccccAGATTAACGTGATCCAGTC i pelSin1.JH205571 I 10 N 0 a score=608.000000 s galGal6.chrUn_NW_020109943v1 2175 28 + 4766 cttgccgag--atggctttccaaggaggac s melGal5.chr6 47757259 30 + 50680202 tttgaaaaatcatggctgttcAGTGAAGAC i melGal5.chr6 C 0 N 0 a score=1414.000000 s galGal6.chrUn_NW_020109943v1 2771 116 + 4766 agcctactgccccc-ctgtcacgggcacagatctatctaggtaactccgtgacagccTGCAATAACGCCAATGGC-ACCACTGACCC--ACTGAGCCCt-ttgaccc-agtgaccccag-tga s danRer11.chr21 45687824 106 - 45934066 AGCCTGCTGACCCTGCTGTCAT---------------CAGTTacccccac--taacccctactgaccccattgaccaccactgacccccactAATTCCTGTTGACCCCACTGACCTCTGCTGA i danRer11.chr21 N 0 C 0 a score=-290.000000 s galGal6.chrUn_NW_020109943v1 2887 20 + 4766 cctcacATGAACCCCATAAT s apaSpi1.APJP01188868 46 19 + 399 CCCCAGCAGGAGCCAATGA- i apaSpi1.APJP01188868 N 0 C 0 s danRer11.chr21 45687930 20 - 45934066 CCATAGAGACCCCCACTGAT i danRer11.chr21 C 0 C 0 a score=6132.000000 s galGal6.chrUn_NW_020109943v1 2907 137 + 4766 ccaactgaccc-caatgatccccattgaccccactgac-ccctttaacccaaaggagccttatagac-cccaatgaccccaataac-ccaaatgacccacactgaccccagtaac-cccactgactccaatgacACGAATAA- s apaSpi1.APJP01188868 65 121 + 399 -CAAATGTCGC-TAATGAGACCCAGCAGCAATGCTCAT-TGGTCTA-----------CGACACCAAC-CCCAATGGCCCCAACGATGCTCATTGGTCTACA---ACACCG--ACC-CCCACCAACCCCAATGACCCCAATGA- i apaSpi1.APJP01188868 C 0 C 0 s xenTro9.chr4 117516483 134 - 133473341 cccactagccc-cagtgcCACCAACTAACCCCGGTGCCACCCACTAACCCCAGTGCCACCCACTAAC-CCCAGTGCCACCAACTAACCCCGGTGCCACCCACTAACCCCAGTGCCACCAACTAACCCCGGTGCCAC------- i xenTro9.chr4 N 0 C 0 s danRer11.chr21 45687950 143 - 45934066 CCTATTGACCTATTCTAACCCTCGCTGACCCCACTGACTCCTACTGACCCCTGCTAGCCCCACTGACACCCACTGCCCCCACTAGTACCCACTGATCCTCAGTAACCCCACTGACCCCCGCTAACCCCACTACTACCCACTGA i danRer11.chr21 C 0 C 0 a score=67.000000 s galGal6.chrUn_NW_020109943v1 3044 1 + 4766 C s melGal5.chrUn_NW_011131348v1 32 1 + 578 T i melGal5.chrUn_NW_011131348v1 N 0 I 170 s apaSpi1.APJP01188868 186 1 + 399 T i apaSpi1.APJP01188868 C 0 C 0 s danRer11.chr21 45688093 1 - 45934066 C i danRer11.chr21 C 0 C 0 e xenTro9.chr4 117516617 0 - 133473341 C a score=12324.000000 s galGal6.chrUn_NW_020109943v1 3045 131 + 4766 CTTCATTGACCGCAGTGAC-CCCCCTTGCCCTATTGACGCC----------AGTGACTCCCATTGAC-CctaatgaccccattgactccaataaCCCC--ATTAACCGCACTGACCCCCACTAACCCCAATGACACCCATGATCA s apaSpi1.APJP01188868 187 103 + 399 GCTCATTGGTCT------------------------ACAAC----------ACCGACCCCCGCCAAC-CCCAATGACCCCAACGATGCTCATTAGCCT--ATGA----CACTGACCCCCGCCAACCCCAATGACCCCAACGATC- i apaSpi1.APJP01188868 C 0 C 0 s xenTro9.chr4 117516617 121 - 133473341 --CTACTAACCCCGGTGCCACCCACTAACCCCAGTGCCACC----------AACTAACCCCGGTGCCACCTACTAACCCCGGTGCCACCCACTAACCC----------CGGTGCCACCCACTAACCCCAGTGCCACCCATACA-- i xenTro9.chr4 C 0 C 0 s danRer11.chr21 45688094 143 - 45934066 CCCCAGTAACCCCACTGACCCCCGCTAACACCACTGACACCACTAGTACCTACTGACCCCCGCTAAC-ACCACTGACCCCACTAGTACCCACTGACCCCCAGTAACCCCACTGACCCCCGCTAACACCACTGACACCACTAGTA- i danRer11.chr21 C 0 C 0 e melGal5.chrUn_NW_011131348v1 33 170 + 578 I a score=476.000000 s galGal6.chrUn_NW_020109943v1 3176 1 + 4766 c s melGal5.chrUn_NW_011131348v1 203 1 + 578 c i melGal5.chrUn_NW_011131348v1 I 170 N 0 s apaSpi1.APJP01188868 290 1 + 399 C i apaSpi1.APJP01188868 C 0 C 0 s xenTro9.chr4 117516738 1 - 133473341 T i xenTro9.chr4 C 0 C 0 s danRer11.chr21 45688237 1 - 45934066 C i danRer11.chr21 C 0 C 0 a score=492.000000 s galGal6.chrUn_NW_020109943v1 3177 6 + 4766 ccattg s apaSpi1.APJP01188868 291 6 + 399 TCATTG i apaSpi1.APJP01188868 C 0 C 0 s xenTro9.chr4 117516739 6 - 133473341 TGGCAG i xenTro9.chr4 C 0 C 0 s danRer11.chr21 45688238 6 - 45934066 CTACTG i danRer11.chr21 C 0 N 0 a score=-887.000000 s galGal6.chrUn_NW_020109943v1 3183 17 + 4766 ggtgagcctcctgttgg s apaSpi1.APJP01188868 297 1 + 399 G---------------- i apaSpi1.APJP01188868 C 0 C 0 s xenTro9.chr4 117516745 17 - 133473341 GGCAAGTTCCCAGCTGG i xenTro9.chr4 C 0 N 0 a score=979.000000 s galGal6.chrUn_NW_020109943v1 3200 62 + 4766 tttcttcaaatttggtacCAATCCTGGGGACCAAaacca-------cagcctgaaaggctggcACCAGT s apaSpi1.APJP01188868 298 61 + 399 --TCTCCAA------CACCAACCCCAATGACCACAACGATGTTCATTAGCCTACAACACCAACCCCAAT i apaSpi1.APJP01188868 C 0 N 0