##maf version=1 scoring=roast.v3.3 a score=799.000000 s galGal6.chrUn_NW_020109954v1 276 36 + 5521 caggcaaggcaaggaaacgCAAAACAGCCAATGCAa s araMac1.AOUJ01241610 60 33 - 4039 catggaaaacaagaaaa---agaaaatccaatttag i araMac1.AOUJ01241610 N 0 I 9 a score=0.000000 s galGal6.chrUn_NW_020109954v1 312 10 + 5521 cgctaggcca e araMac1.AOUJ01241610 93 9 - 4039 I a score=100.000000 s galGal6.chrUn_NW_020109954v1 322 1 + 5521 g s araMac1.AOUJ01241610 102 1 - 4039 g i araMac1.AOUJ01241610 I 9 I 22 a score=0.000000 s galGal6.chrUn_NW_020109954v1 323 22 + 5521 gcaaggccatgcaaggtaaggc e araMac1.AOUJ01241610 103 22 - 4039 I a score=237.000000 s galGal6.chrUn_NW_020109954v1 345 6 + 5521 caggca s araMac1.AOUJ01241610 125 6 - 4039 cagtta i araMac1.AOUJ01241610 I 22 I 28 a score=0.000000 s galGal6.chrUn_NW_020109954v1 351 47 + 5521 agttgCAACTTGAGactctaggcaaggcaaggcaagtccaggcaact e araMac1.AOUJ01241610 131 28 - 4039 I a score=-34.000000 s galGal6.chrUn_NW_020109954v1 398 2 + 5521 ct s araMac1.AOUJ01241610 159 2 - 4039 GT i araMac1.AOUJ01241610 I 28 I 23 a score=0.000000 s galGal6.chrUn_NW_020109954v1 400 14 + 5521 aggcaaggtaaggc e araMac1.AOUJ01241610 161 23 - 4039 I a score=259.000000 s galGal6.chrUn_NW_020109954v1 414 5 + 5521 tagga s araMac1.AOUJ01241610 184 5 - 4039 TTGGA i araMac1.AOUJ01241610 I 23 I 228 a score=0.000000 s galGal6.chrUn_NW_020109954v1 419 203 + 5521 aactcaaggcaagtaacggtaaggccaggctaggccaggcaggacaaggcagggcaagccaaggcaaggccatgccaagctaggccagcaCGGCCAGGCTGATACAGCAAGACAAGGCTACTCCAAGCAAGGCCAatccaggcaagtcaaggcattcacaggcaagaccaggcaaggccaggaggGCCAGGAAAagaccaggc e araMac1.AOUJ01241610 189 228 - 4039 I a score=-123.000000 s galGal6.chrUn_NW_020109954v1 622 1 + 5521 a s araMac1.AOUJ01241610 417 1 - 4039 T i araMac1.AOUJ01241610 I 228 I 26 a score=0.000000 s galGal6.chrUn_NW_020109954v1 623 30 + 5521 agtccaggcctgcACAGGTAAGCAAGACAA e araMac1.AOUJ01241610 418 26 - 4039 I a score=100.000000 s galGal6.chrUn_NW_020109954v1 653 1 + 5521 G s araMac1.AOUJ01241610 444 1 - 4039 G i araMac1.AOUJ01241610 I 26 I 30 a score=0.000000 s galGal6.chrUn_NW_020109954v1 654 32 + 5521 GCCAGACAGAGGCAAGAAAAGCCCAGGCAAGT e araMac1.AOUJ01241610 445 30 - 4039 I a score=91.000000 s galGal6.chrUn_NW_020109954v1 686 1 + 5521 T s araMac1.AOUJ01241610 475 1 - 4039 T i araMac1.AOUJ01241610 I 30 I 197 a score=0.000000 s galGal6.chrUn_NW_020109954v1 687 229 + 5521 CCAGGCTAAACCATGaaaggaaaggcatggcaaggcaaggccaacaaaacaaggcaatgcaaggcaagtccaggcaatgtcaggcaaggcaaaaaaaacgaaaaaTAAGAGAACCCGGACAGGCAAGGCCATAGCAAGGCCCTGGgtaaggcaaggacaggcaagtgcaatgcaaaggcaaggctaggaTAGAAAATCCGTCCATGCACGACAAAGCACGGAAAGTCAA e araMac1.AOUJ01241610 476 197 - 4039 I a score=6.000000 s galGal6.chrUn_NW_020109954v1 916 5 + 5521 AGCCA s araMac1.AOUJ01241610 673 5 - 4039 AGTTT i araMac1.AOUJ01241610 I 197 I 28 a score=0.000000 s galGal6.chrUn_NW_020109954v1 921 28 + 5521 AGCCTTGTCTTACCTTGCCTTGAactgc e araMac1.AOUJ01241610 678 28 - 4039 I a score=-114.000000 s galGal6.chrUn_NW_020109954v1 949 1 + 5521 t s araMac1.AOUJ01241610 706 1 - 4039 G i araMac1.AOUJ01241610 I 28 I 25 a score=0.000000 s galGal6.chrUn_NW_020109954v1 950 25 + 5521 tggcctggcctaAACTTGCATATCC e araMac1.AOUJ01241610 707 25 - 4039 I a score=91.000000 s galGal6.chrUn_NW_020109954v1 975 1 + 5521 T s araMac1.AOUJ01241610 732 1 - 4039 T i araMac1.AOUJ01241610 I 25 I 28 a score=0.000000 s galGal6.chrUn_NW_020109954v1 976 48 + 5521 TCCCTTGCATGGCATGGCCTTTCCtagtgttgccttgcctggcctggc e araMac1.AOUJ01241610 733 28 - 4039 I a score=-31.000000 s galGal6.chrUn_NW_020109954v1 1024 1 + 5521 g s araMac1.AOUJ01241610 761 1 - 4039 A i araMac1.AOUJ01241610 I 28 I 22 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1025 21 + 5521 ttgttttgctatgtttgcctt e araMac1.AOUJ01241610 762 22 - 4039 I a score=86.000000 s galGal6.chrUn_NW_020109954v1 1046 3 + 5521 gcc s araMac1.AOUJ01241610 784 3 - 4039 GAC i araMac1.AOUJ01241610 I 22 I 6 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1049 6 + 5521 ttgcct e araMac1.AOUJ01241610 787 6 - 4039 I a score=-23.000000 s galGal6.chrUn_NW_020109954v1 1055 2 + 5521 tg s araMac1.AOUJ01241610 793 2 - 4039 AG i araMac1.AOUJ01241610 I 6 I 9 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1057 9 + 5521 cctgaactt e araMac1.AOUJ01241610 795 9 - 4039 I a score=-114.000000 s galGal6.chrUn_NW_020109954v1 1066 1 + 5521 t s araMac1.AOUJ01241610 804 1 - 4039 G i araMac1.AOUJ01241610 I 9 I 71 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1067 70 + 5521 gcTAGCGTCGCccttgcctgcctggctttgactggtcttgccttgcattgcctggccgTGCCTAGATTTG e araMac1.AOUJ01241610 805 71 - 4039 I a score=-31.000000 s galGal6.chrUn_NW_020109954v1 1137 1 + 5521 G s araMac1.AOUJ01241610 876 1 - 4039 a i araMac1.AOUJ01241610 I 71 I 120 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1138 135 + 5521 CatgcgttgccttgccttgactggccttgcgtTGCCCAGCCCTTCTTCGTCTAGATATaacttgccttgtctggccttgcccttcattgcctgaacttgccttgccttacttggccttTAGTGGCCCTTCCTAGC e araMac1.AOUJ01241610 877 120 - 4039 I a score=-154.000000 s galGal6.chrUn_NW_020109954v1 1273 2 + 5521 TG s araMac1.AOUJ01241610 997 2 - 4039 AA i araMac1.AOUJ01241610 I 120 I 29 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1275 30 + 5521 ACCTTGCTTtatcttgcctggacttgcctt e araMac1.AOUJ01241610 999 29 - 4039 I a score=100.000000 s galGal6.chrUn_NW_020109954v1 1305 1 + 5521 g s araMac1.AOUJ01241610 1028 1 - 4039 G i araMac1.AOUJ01241610 I 29 I 71 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1306 84 + 5521 cacttctttgccttgccgtgactggcctggacttgccctgccttgctttaCCTTTACTTACCTTGCTTTCACTGCCCTTGCCTT e araMac1.AOUJ01241610 1029 71 - 4039 I a score=100.000000 s galGal6.chrUn_NW_020109954v1 1390 1 + 5521 G s araMac1.AOUJ01241610 1100 1 - 4039 G i araMac1.AOUJ01241610 I 71 I 55 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1391 9 + 5521 ACtagccta e araMac1.AOUJ01241610 1101 55 - 4039 I a score=-266.000000 s galGal6.chrUn_NW_020109954v1 1400 8 + 5521 gccttgcc s melGal5.chr26 2287423 8 + 6432859 GGTCAGTG i melGal5.chr26 N 0 N 0 e araMac1.AOUJ01241610 1101 55 - 4039 I a score=0.000000 s galGal6.chrUn_NW_020109954v1 1408 34 + 5521 tggacgggcctggccatgcctttgCCTGGAGAGG e araMac1.AOUJ01241610 1101 55 - 4039 I a score=-46.000000 s galGal6.chrUn_NW_020109954v1 1442 4 + 5521 CCTT s araMac1.AOUJ01241610 1156 4 - 4039 CCAA i araMac1.AOUJ01241610 I 55 I 20 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1446 11 + 5521 GGTTTGTCTTG e araMac1.AOUJ01241610 1160 20 - 4039 I a score=-31.000000 s galGal6.chrUn_NW_020109954v1 1457 1 + 5521 C s araMac1.AOUJ01241610 1180 1 - 4039 T i araMac1.AOUJ01241610 I 20 I 42 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1458 42 + 5521 ATAACCTTGCCTGGACTTGGCTAGCATTGCCTAGGATTGTGT e araMac1.AOUJ01241610 1181 42 - 4039 I a score=200.000000 s galGal6.chrUn_NW_020109954v1 1500 2 + 5521 GG s araMac1.AOUJ01241610 1223 2 - 4039 GG i araMac1.AOUJ01241610 I 42 I 85 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1502 94 + 5521 GCTTACcgtgccatgccttgctttccctgacaggccttgccttgcctagtgaTGCTTAGCCTGGCCTGGGCTTGTTTTGTcatgctgtgccttg e araMac1.AOUJ01241610 1225 85 - 4039 I a score=-114.000000 s galGal6.chrUn_NW_020109954v1 1596 1 + 5521 c s araMac1.AOUJ01241610 1310 1 - 4039 A i araMac1.AOUJ01241610 I 85 I 39 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1597 44 + 5521 ctggactttccatgcattgccttgccttgactggccttgccatg e araMac1.AOUJ01241610 1311 39 - 4039 I a score=100.000000 s galGal6.chrUn_NW_020109954v1 1641 1 + 5521 c s araMac1.AOUJ01241610 1350 1 - 4039 C i araMac1.AOUJ01241610 I 39 I 29 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1642 29 + 5521 cttgccttttttgTTATGGATTTGCTCTG e araMac1.AOUJ01241610 1351 29 - 4039 I a score=91.000000 s galGal6.chrUn_NW_020109954v1 1671 1 + 5521 T s araMac1.AOUJ01241610 1380 1 - 4039 t i araMac1.AOUJ01241610 I 29 I 53 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1672 53 + 5521 CCAGCCTTGCTTTACCTTGCTTTACACTGCCTGGCCAGGAATTTCCCtgcttt e araMac1.AOUJ01241610 1381 53 - 4039 I a score=-114.000000 s galGal6.chrUn_NW_020109954v1 1725 1 + 5521 t s araMac1.AOUJ01241610 1434 1 - 4039 g i araMac1.AOUJ01241610 I 53 I 125 a score=0.000000 s galGal6.chrUn_NW_020109954v1 1726 81 + 5521 cctggccttgcctggccttgctttgcctagatttgccttgcctggccaggcttcaacttgccttgcctcgcctcgcgttgt e araMac1.AOUJ01241610 1435 125 - 4039 I a score=-23.000000 s galGal6.chrUn_NW_020109954v1 1807 2 + 5521 tt s tauEry1.KL453161 1142 2 - 2189 TG i tauEry1.KL453161 N 0 C 0 e araMac1.AOUJ01241610 1435 125 - 4039 I a score=981.000000 s galGal6.chrUn_NW_020109954v1 1809 11 + 5521 tgccatgccgt s tauEry1.KL453161 1144 11 - 2189 TGACACGCCAA i tauEry1.KL453161 C 0 C 0 s oryLat2.ultracontig106 242082 11 + 688894 TGACAGGACGG i oryLat2.ultracontig106 N 0 C 0 e araMac1.AOUJ01241610 1435 125 - 4039 I a score=-1080.000000 s galGal6.chrUn_NW_020109954v1 1820 1 + 5521 -g s tauEry1.KL453161 1155 1 - 2189 -G i tauEry1.KL453161 C 0 C 0 s xenTro9.chrUn_NW_016683503v1 241662 1 + 335852 -g i xenTro9.chrUn_NW_016683503v1 N 0 C 0 s oryLat2.ultracontig106 242093 1 + 688894 T- i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1435 125 - 4039 I a score=-4916.000000 s galGal6.chrUn_NW_020109954v1 1821 50 + 5521 ccatgcattgctaggccaggcaaggtaacgcCTGGGAATGCCAGGCCTTG-------- s tauEry1.KL453161 1156 45 - 2189 GCATGTGACAC--GCCAAGGCACCGACACACCAAGGCATGT---GACATG-------- i tauEry1.KL453161 C 0 C 0 s xenTro9.chrUn_NW_016683503v1 241663 50 + 335852 ccaagctaatataggccaagctaatacaggccaagctaatacaggccaag-------- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679750 58 + 11516971 CCATGTAAGGTCAGACCAGACCAGATGAGAACAGGCCAGAACAGTTCAGAACAAACTG i fr3.chr15 N 0 C 0 s oryLat2.ultracontig106 242094 56 + 688894 CCATGCAGGAC--GTCCATGACAGGACGGTGCATGACAGGACGGTCCATGCAGGACGT i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1435 125 - 4039 I a score=-103.000000 s galGal6.chrUn_NW_020109954v1 1871 1 + 5521 C s tauEry1.KL453161 1201 1 - 2189 C i tauEry1.KL453161 C 0 C 0 s araMac1.AOUJ01241610 1560 1 - 4039 T i araMac1.AOUJ01241610 I 125 I 76 s xenTro9.chrUn_NW_016683503v1 241713 1 + 335852 c i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679808 1 + 11516971 A i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242150 1 + 688894 C i oryLat2.ultracontig106 C 0 C 0 a score=-12168.000000 s galGal6.chrUn_NW_020109954v1 1872 36 + 5521 TACGAC-CGGGCAGGATA---------------------------GGCTTGAGCATTCCAGgct s tauEry1.KL453161 1202 38 - 2189 TAAGGCGCCAACATGCTA--------------------------AGGCACCGACACACTAAGGC i tauEry1.KL453161 C 0 I 38 s xenTro9.chrUn_NW_016683503v1 241714 46 + 335852 taaTAC-AGGCCAAGATAATA-----------------CAGGCCAAGCTAATACAGGCCAAGCT i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679809 53 + 11516971 -----------TTTGATCTGATCTCATCTGGTCCTGTCTGGTCCAGATGAGATCAGATTAAATC i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242151 35 + 688894 -----------CATGACAGGA-----------------CGGTCCATGCAGGA-CGGTTCATGAC i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1561 76 - 4039 I a score=-1388.000000 s galGal6.chrUn_NW_020109954v1 1908 38 + 5521 aatccaggccag----gcaa-----ggcccggccaatCAAGACc-------tgc s xenTro9.chrUn_NW_016683503v1 241760 50 + 335852 AATACAGGCCAA----GCTAATATAGGCCATGCTAATATAGGCCAAACTAATAC i xenTro9.chrUn_NW_016683503v1 C 0 I 1 s fr3.chr15 4679862 39 + 11516971 AATTTAGACCAGACCAGATA-----GATCAGTTCACTCCAGTGC---------- i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242186 35 + 688894 AAGACGGTCCAT----GACA-----GGACGGTCCATGACAGGAC---------- i oryLat2.ultracontig106 C 0 C 0 e tauEry1.KL453161 1240 38 - 2189 I e araMac1.AOUJ01241610 1561 76 - 4039 I a score=-2741.000000 s galGal6.chrUn_NW_020109954v1 1946 4 + 5521 -aatg s tauEry1.KL453161 1278 4 - 2189 -GACA i tauEry1.KL453161 I 38 I 24 s xenTro9.chrUn_NW_016683503v1 241811 3 + 335852 -GGC- i xenTro9.chrUn_NW_016683503v1 I 1 C 0 s fr3.chr15 4679901 4 + 11516971 AGTT- i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242221 4 + 688894 GGTC- i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1561 76 - 4039 I a score=1000.000000 s galGal6.chrUn_NW_020109954v1 1950 1 + 5521 c s araMac1.AOUJ01241610 1637 1 - 4039 C i araMac1.AOUJ01241610 I 76 I 30 s xenTro9.chrUn_NW_016683503v1 241814 1 + 335852 C i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679905 1 + 11516971 C i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242225 1 + 688894 C i oryLat2.ultracontig106 C 0 C 0 e tauEry1.KL453161 1282 24 - 2189 I a score=364.000000 s galGal6.chrUn_NW_020109954v1 1951 24 + 5521 aagacaaga-aatgtcCTGGCAGGA s xenTro9.chrUn_NW_016683503v1 241815 24 + 335852 AAGCTAATA-TAGGCCATGCTAATA i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679906 24 + 11516971 -AGATGAGACCAGTTCAAACCAGTT i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242226 23 + 688894 -ATGCAGGA-CGGTTCATGACAGGA i oryLat2.ultracontig106 C 0 C 0 e tauEry1.KL453161 1282 24 - 2189 I e araMac1.AOUJ01241610 1638 30 - 4039 I a score=144.000000 s galGal6.chrUn_NW_020109954v1 1975 1 + 5521 A s tauEry1.KL453161 1306 1 - 2189 C i tauEry1.KL453161 I 24 I 11 s xenTro9.chrUn_NW_016683503v1 241839 1 + 335852 C i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679930 1 + 11516971 C i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242249 1 + 688894 C i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1638 30 - 4039 I a score=781.000000 s galGal6.chrUn_NW_020109954v1 1976 9 + 5521 AGGACAGGC s xenTro9.chrUn_NW_016683503v1 241840 9 + 335852 AGGCCAAGC i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679931 9 + 11516971 AGACAAGAC i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242250 9 + 688894 GGTCCATGA i oryLat2.ultracontig106 C 0 C 0 e tauEry1.KL453161 1307 11 - 2189 I e araMac1.AOUJ01241610 1638 30 - 4039 I a score=187.000000 s galGal6.chrUn_NW_020109954v1 1985 1 + 5521 T s tauEry1.KL453161 1318 1 - 2189 T i tauEry1.KL453161 I 11 N 0 s xenTro9.chrUn_NW_016683503v1 241849 1 + 335852 T i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679940 1 + 11516971 C i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242259 1 + 688894 C i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1638 30 - 4039 I a score=-2937.000000 s galGal6.chrUn_NW_020109954v1 1986 30 + 5521 ATGGCTGGCTCGGCGAGATG-TGACCAGGCG s xenTro9.chrUn_NW_016683503v1 241850 30 + 335852 AATACAGGCCAAGCTAATAC-AGGCCATGCT i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679941 30 + 11516971 AGATCAAACAAATCCAGACCAGATCAGTTC- i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242260 29 + 688894 AGGACGGTCCATGACAGATC-GGTCCATGC- i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1638 30 - 4039 I a score=910.000000 s galGal6.chrUn_NW_020109954v1 2016 1 + 5521 A s araMac1.AOUJ01241610 1668 1 - 4039 A i araMac1.AOUJ01241610 I 30 I 25 s xenTro9.chrUn_NW_016683503v1 241880 1 + 335852 A i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679971 1 + 11516971 A i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242289 1 + 688894 A i oryLat2.ultracontig106 C 0 C 0 a score=-4072.000000 s galGal6.chrUn_NW_020109954v1 2017 32 + 5521 GGTCAAACAgagcaagca-aggcaaaatgaatC- s xenTro9.chrUn_NW_016683503v1 241881 33 + 335852 ATACAGGCCAAGCTAATACAGGCCATGCTAATA- i xenTro9.chrUn_NW_016683503v1 C 0 I 6 s fr3.chr15 4679972 29 + 11516971 GAACACACAAGAC-----CAGTTCAAATGAGACC i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242290 33 + 688894 GGACGTCCATGAC-AGGACGGTCCATGACAGGAC i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1669 25 - 4039 I a score=-1209.000000 s galGal6.chrUn_NW_020109954v1 2049 3 + 5521 GAG- s xenTro9.chrUn_NW_016683503v1 241920 3 + 335852 AAG- i xenTro9.chrUn_NW_016683503v1 I 6 C 0 s xenLae2.chr1S 217393 3 + 179946965 GAG- i xenLae2.chr1S N 0 C 0 s fr3.chr15 4680001 3 + 11516971 -AGT i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242323 3 + 688894 -GGT i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1669 25 - 4039 I a score=-3786.000000 s galGal6.chrUn_NW_020109954v1 2052 1 + 5521 -G s araMac1.AOUJ01241610 1694 1 - 4039 -G i araMac1.AOUJ01241610 I 25 I 38 s xenTro9.chrUn_NW_016683503v1 241923 1 + 335852 -C i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217396 1 + 179946965 -G i xenLae2.chr1S C 0 C 0 s fr3.chr15 4680004 1 + 11516971 T- i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242326 1 + 688894 C- i oryLat2.ultracontig106 C 0 C 0 a score=-990.000000 s galGal6.chrUn_NW_020109954v1 2053 46 + 5521 --TACACGAAGGAAACGTAAGGCAAGCCCATACATGCCAGGAAAGTCA s xenTro9.chrUn_NW_016683503v1 241924 36 + 335852 --TAATA----------TAGGCCAAGCTAATACAGGCCAAGCTAATAC i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217397 46 + 179946965 --TAATAGGGGGAAGCCTGAGGTAAACCCATAGATGGCAGGACAGTCT i xenLae2.chr1S C 0 I 2 s fr3.chr15 4680005 36 + 11516971 CAAACCA--------GTTCAGACAAGAC----CAGAGCAAATGAGTCC i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242327 45 + 688894 CATGACA---GGACGGTCCATGCAGGACGGTTCATGACAGGAAGGTCC i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1695 38 - 4039 I a score=1365.000000 s galGal6.chrUn_NW_020109954v1 2099 1 + 5521 A s araMac1.AOUJ01241610 1733 1 - 4039 A i araMac1.AOUJ01241610 I 38 I 15 s xenTro9.chrUn_NW_016683503v1 241960 1 + 335852 A i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217445 1 + 179946965 A i xenLae2.chr1S I 2 C 0 s fr3.chr15 4680041 1 + 11516971 A i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242372 1 + 688894 A i oryLat2.ultracontig106 C 0 C 0 a score=277.000000 s galGal6.chrUn_NW_020109954v1 2100 15 + 5521 AGCCAGGACAGCTCA s xenTro9.chrUn_NW_016683503v1 241961 7 + 335852 GGCCATG-------- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217446 15 + 179946965 AGCCATAGGAAAGCA i xenLae2.chr1S C 0 C 0 s fr3.chr15 4680042 15 + 11516971 GACCAGGTCAGTTCA i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242373 15 + 688894 TGACAGGACGGTGCA i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1734 15 - 4039 I a score=-831.000000 s galGal6.chrUn_NW_020109954v1 2115 2 + 5521 TG s araMac1.AOUJ01241610 1749 2 - 4039 GT i araMac1.AOUJ01241610 I 15 I 7 s xenLae2.chr1S 217461 2 + 179946965 AG i xenLae2.chr1S C 0 I 2 s fr3.chr15 4680057 2 + 11516971 GA i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242388 2 + 688894 TG i oryLat2.ultracontig106 C 0 C 0 e xenTro9.chrUn_NW_016683503v1 241968 0 + 335852 C a score=-2982.000000 s galGal6.chrUn_NW_020109954v1 2117 7 + 5521 CCAAGAG----- s xenTro9.chrUn_NW_016683503v1 241968 7 + 335852 CTAATAC----- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217465 7 + 179946965 TTAATAA----- i xenLae2.chr1S I 2 C 0 s fr3.chr15 4680059 7 + 11516971 -----CCACACA i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242390 2 + 688894 -----AC----- i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1751 7 - 4039 I a score=2925.000000 s galGal6.chrUn_NW_020109954v1 2124 4 + 5521 AGGC s araMac1.AOUJ01241610 1758 4 - 4039 AGAT i araMac1.AOUJ01241610 I 7 I 22 s xenTro9.chrUn_NW_016683503v1 241975 4 + 335852 AGGC i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217472 4 + 179946965 AGAT i xenLae2.chr1S C 0 C 0 s fr3.chr15 4680066 4 + 11516971 AGGC i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242392 4 + 688894 AGGA i oryLat2.ultracontig106 C 0 C 0 a score=-5941.000000 s galGal6.chrUn_NW_020109954v1 2128 22 + 5521 CAGGTTA--ACCAACTGTAGTCCA s xenTro9.chrUn_NW_016683503v1 241979 12 + 335852 CAAACTA--ATACA---------- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217476 12 + 179946965 TAAACTT--ACAGA---------- i xenLae2.chr1S C 0 C 0 s fr3.chr15 4680070 12 + 11516971 CAGTTCA-GATGA----------- i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242396 13 + 688894 CGGTCCATGACAG----------- i oryLat2.ultracontig106 C 0 C 0 e araMac1.AOUJ01241610 1762 22 - 4039 I a score=207.000000 s galGal6.chrUn_NW_020109954v1 2150 1 + 5521 A s araMac1.AOUJ01241610 1784 1 - 4039 G i araMac1.AOUJ01241610 I 22 N 0 s fr3.chr15 4680082 1 + 11516971 G i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242409 1 + 688894 G i oryLat2.ultracontig106 C 0 C 0 e xenLae2.chr1S 217488 0 + 179946965 C e xenTro9.chrUn_NW_016683503v1 241991 0 + 335852 C a score=-27319.000000 s galGal6.chrUn_NW_020109954v1 2151 178 + 5521 AC----CAGTGCAGTTCAGCTAAGGCGAGTCAAATTACACAAAGGCAA--GTcaag----gaaatgcaaaacagGCAATGCAAAGCTAGGCCAGGTAAGGCCATGAAGGGTAAGGCAAAGAAAGTTGCAACTTGCAATTCTAGGCTAAGC--------TACTCAAGGCAAGTC----CAGTCAAAtcaaggaaagtc--------------cag----- s xenTro9.chrUn_NW_016683503v1 241991 151 + 335852 ------------GGCCATGCTAATACAGGCCAAGCT-----AATACAG--GCCAAG----GTAATACAGGCCAAGC----TAATAT-AGGCCAAGCTAAT-----ATAGGCCAAGCTAATACAGGCCAA----GGTAATATAGGCCAAGC------------TAATACAGGCC----AAGCTAATACAGGCCAAGCTAATA----------CAG----- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217488 202 + 179946965 AC----AGGTGCAGCAACAAAAATACAGGCAGTGATG-GGGAAAACAGCAATCAGGAATCGTAGTgagaaacaggc----caaggtcagaaccGGGGAATCCGCAGCAGTTGGAAGGAACACAGGTCAGGAGTGACAAGAAATGCCAAgcaggaatcgtagtcagatcaggcca---aaGTCAATACCAGGAAATCCACGAAGGTAGGGATCAG----- i xenLae2.chr1S C 0 C 0 s fr3.chr15 4680083 170 + 11516971 AC----CAGTTCAAACCAGTCCAGACAAGACCAG----AGCAAACGAG--TCCAGA----CCAGGTCAGTTCAGACCACACAAGGCCAGTTCAGATGAGACCAGAGTAGTTCAGGTGGGATCAGATCGG----ACCAACTTAGACCAGAC------------CAGATGAGACCAGTTCAGACCACTTCGGAC-------------------CAGAGCAG i fr3.chr15 C 0 N 0 s oryLat2.ultracontig106 242410 165 + 688894 ACGGTGCATGACAGGACGGTCCATGCAGGAC----------------G--TCCATG----ACAGGACGGTCCATGC------AGGACGGTCCATGACAGGACGGTGCATGACAGGACGGTCCATGACAG----GACGGTCCATGACAGGA------------CGGTGCATGACAGGACGGTCCATGCAGGACGGTCCATGA----------CAGATCGG i oryLat2.ultracontig106 C 0 I 5 a score=-25684.000000 s galGal6.chrUn_NW_020109954v1 2329 244 + 5521 gcaagtccagcgCATGAAGTGCAAGG--CATgactagtaa--aaaaaaaaggcccgGCCAAATAatgcaaggacaggcaaggcctCGCAAGTCCAGGCTATGCCTGGAAAGTCC-TGaacggccag---gcaaggcaaggtaagtcTATGCAAGCCATGCTAgccagg-cacggccaggcaaggcaagtccagccAGTCAcgcatggcaaggcaagga---------cagtcaaggca-aggaaattccaggcaagtcaaggt s xenTro9.chrUn_NW_016683503v1 242142 193 + 335852 GCCATGCTAATACAGG------------CCAAGCT---------AATACAGGCCAAGCTAATACAGGCCAAGCTAATATAGGCCAAGCTAATACAGGCCATGC--------------TAATACAGG---CCAAGCTAATAT----------AGGCCAAGCTAATA----CAGGCCAAGGTAATATAGGCCAAGCT---AATACAGGCCAAGCTAATAC---------AGGCCA------AGCTAATACAGGCCAAGCTAATAT i xenTro9.chrUn_NW_016683503v1 C 0 I 459 s xenLae2.chr1S 217690 219 + 179946965 GACACATGAACACTGGAATTTAAGAACTTGGAACTTG------GAACATAGGATCTAGGAACACAG---AAGCT--TGGAAGCAAGTCTTGCAGGGAATATGC--------------AATGACCAAGCCCCGAGCAAAGGTCA--------GGGCTGGGCttata----------aaggggacataaatggAGATgg-aaaacacatgagggtaacgagatgggaggagaccagggaggagatAGACTGGGAAAAGGCAGAGT i xenLae2.chr1S C 0 C 0 s oryLat2.ultracontig106 242580 221 + 688894 -----------GCAGGACGTCCATGA--CAGGACGGTGCATGACAGGACGGTCCATGACAGGACGGTCCATGACAGGACGGTGCATGACAGGACGGTCCATGC-AGGACGGTCCATGACAGATCGG---TCCATGCAGGAC----------GGTCCATGACAGGACGTCCATGACAGGACGGTCCATGACAGGAC---GGTCCATGACAGGACGGTGC---------ATGACAGGAC--GGTCCATGCAGGACGGTCCATGA- i oryLat2.ultracontig106 I 5 C 0 a score=-31198.000000 s galGal6.chrUn_NW_020109954v1 2573 351 + 5521 taggcaaagc-aatgcaag----tcatggccaagcaaaacaaggcaaggccaggaatgtccaggcaaagccag------gcaaagtaaaacagtgcaaaataaggaaaggccaggcatagcaaggcctggcccggcca-ggcaag--gcaaagcaaggcaagggaaggccagtcAAAGCAAGCCAGGTCCAGATAAGTCctgtccaggcaa------ggcaaggcat------agcaaaccaaggcaaggcata-gcaaaaaaagc-aaaacaaggcaagtcca-----aacaagacaagacaagTCAAGGcatgcagggccaggcaaggccaa-gtaagtcaaggcaatgcag----------caa--agcagaacaagtTCAGG-------CCAGG---------TAg-----ggc s xenTro9.chrUn_NW_016683503v1 242794 290 + 335852 TAGGCAAAGCTAATGTAGG----CCAAGCTAATACAGGCCAAGCTAATACAGG------CCAAGCTAATACAG------GCAAAGCT----AATGTAGGCCAAGCTAATACAGG-----------CCAAGCTAATACA-GGCAAA--GCTAATGTAGGC-------------------CAAGCTA-------ATA---------CAGGCAA----------------------AGCTAATGTAGGCCAAGCTAATACAGGCAAAGCTAATGTAGGCCAAGCTAA-----TACAGGCCAAGCTAATGTAGGCCAAGCTAATACAGGCCAAACTAATACAGGCCAAGCTAAT----------------ACAGGCAAAGCTAATGTAGG-------CCAAG---------CTAATACAGGC i xenTro9.chrUn_NW_016683503v1 I 459 C 0 s xenLae2.chr1S 217909 318 + 179946965 TAGG-------AACATAGA----TGAA--CAGCTCaagaccagcc--------------ccaagagcctccagtggctcacaacGTA----AGCGCAAGTCTAGAAAACACAAGGT---TCGAGTCCCGGCTGGTCCT-GACAAA--GTTTATGAAG---------------------CAACTGAAG----GATA---------TAGGAAA--------CAAGATGATCATTGAGCAACTGAAGGACAGAGGAA-ACAAGAAGATC----ATAGAACAACTGAAGGATTTAGGAAACGGGCAGATTACAGCACAACTGA---AGGATATAGGAA-ACAGG--AAGATCATGAAG----------CAACTGAAGGATTTAATAAAGGGGCAGATCTAAGAGCAACTGACGGATATCGGA i xenLae2.chr1S C 0 C 0 s oryLat2.ultracontig106 242801 344 + 688894 CAGATCGGTC-CATGCAGGACGTCCATGACAGGACGGTGCATGACAGGACGGT------CCATGACAGGACGG------TCCATGCAGGACGGTTCATGACAGGACGGTCCATG-----------ACAGGACGGTCCATGACAGGACGTCCATGCAGGA-------------------CGGTCCATGACAGAACG-GTCCATGACAGGACGGTCCATGACAGGAC--------GGTCCATGCAGGACGGTCCATGACAGGACGGTCCATGACAGGACGGTCCAT-----GACAGGACGGTCC-ATGCAGGACGGTCCATGACAGGACGGTCCATGACAGG--ACGGTTCTGCAGATCCTGGATCTCACTGGAAGAATCCAGAGATG-----ACCCAGA---------CCAGAGAAGTC i oryLat2.ultracontig106 C 0 N 0 a score=-118.000000 s galGal6.chrUn_NW_020109954v1 2924 55 + 5521 aagaggaaaaaaag--------gcaaatgcaaagaaaaagcaagcaaggc--GATGCAGGCCAGA s xenTro9.chrUn_NW_016683503v1 243084 62 + 335852 AAAGCTAATGTAGGCCAAGCTAATACAGGCCAAACTAATATAGGCCATGC-TAATACAGGCCA-- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 218227 56 + 179946965 AAGGGCACTGTAGG--------ATACAGG-AAAAGGAGAGCAAGTTAGGCATACTGCAAGCAGGA i xenLae2.chr1S C 0 N 0 a score=2984.000000 s galGal6.chrUn_NW_020109954v1 2979 388 + 5521 AGCAAGTGTCAGCAGCAAAgagacaaggaaaaagcaatgcAGGCAAGTCCATGAAACACAATTGAATGTCAAActaggcagggccaggcaacTCCAAGTACGTcacggcaagtccaggcaatgaAGGCAAGTACAGGCAAGGCATGCTATGTCCAGGCGAGCAGggaaaggc--aggcaaggcatggcaatcCAAGCAAGCCCATGCAACGCTAGGCAATGCTAGCCAAGTACAGGCAAGGTcatgcaagacaaaacaaggtcatgccaggcaaggcaaggctaggctcggccaagaatggcaacgctaggc-aaggcaaggcaaacccactcaaggcaaggcactccatggcaaatctaggcaaggccaggcaatgcaaggcaagaccag s xenTro9.chrUn_NW_016683503v1 243146 351 + 335852 AGCTAATGT----------------AGGCCAAGCTAATACAGGCCAA----------ACTAATACAGGCCAAGCTAATACAGGCCAAGCTAATACAGG-----CCAAGCTAATATAGGCCAT----GCTAATATAGGC----CAAGCTAATATAGGCCAAGCTAATACAGGCCAAGGTAATATAGGCCAAGCTAATATAGGCCAAGCTAATACAGGCCATGCTAATACAGGCCAAGCTAATATAGGCCAAGCTAATATAGGCCATGCTAATACAGGCCAAGCTAATACAGGCCAAGCTAATATAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCAAGCTAATACA-GGCCAAGCTAATACAGGCCATGTTATACATTGGAAGATCAG i xenTro9.chrUn_NW_016683503v1 C 0 N 0