##maf version=1 scoring=roast.v3.3 a score=552.000000 s galGal6.chrUn_NW_020109973v1 810 29 + 6698 gattttgggaagctgtggctgtgacactg s mesUni1.JJRI01030922 20 29 + 797 ggttttggggggatttggggcaaactcag i mesUni1.JJRI01030922 N 0 C 0 a score=-9.000000 s galGal6.chrUn_NW_020109973v1 839 14 + 6698 gggttccctgtggg s anaPla1.KB755629 2 14 + 942 GGGTCCCCATGGGG i anaPla1.KB755629 N 0 C 0 s mesUni1.JJRI01030922 49 10 + 797 gggttttgag---- i mesUni1.JJRI01030922 C 0 C 0 a score=546.000000 s galGal6.chrUn_NW_020109973v1 853 1 + 6698 t s anaPla1.KB755629 16 1 + 942 T i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 865 1 - 4378 T i fulGla1.KK602514 N 0 I 15 s mesUni1.JJRI01030922 59 1 + 797 t i mesUni1.JJRI01030922 C 0 C 0 a score=948.000000 s galGal6.chrUn_NW_020109973v1 854 12 + 6698 -ggTGTTTGGGGG s anaPla1.KB755629 17 12 + 942 -GGTTTTTGGTGA i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 60 12 + 797 gggattttgggg- i mesUni1.JJRI01030922 C 0 C 0 e fulGla1.KK602514 866 15 - 4378 I a score=667.000000 s galGal6.chrUn_NW_020109973v1 866 2 + 6698 TC s anaPla1.KB755629 29 2 + 942 CC i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 881 2 - 4378 cc i fulGla1.KK602514 I 15 I 49 s mesUni1.JJRI01030922 72 2 + 797 tc i mesUni1.JJRI01030922 C 0 C 0 a score=-1997.000000 s galGal6.chrUn_NW_020109973v1 868 51 + 6698 -CCAC---------------------TATCATTTGAGGGTGCCCATGAG-----TCTGGGgatgtttaagg--cttggag s anaPla1.KB755629 31 79 + 942 -CCAtggggtggttttgggatagttttgtggtttcgggatccccatggggtggttttggggtggttttggggtcctggag i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 74 29 + 797 cccac---------------------aGGGATTTTGGGATCCCCCCGTGG------------------------------ i mesUni1.JJRI01030922 C 0 C 0 e fulGla1.KK602514 883 49 - 4378 I a score=-2119.000000 s galGal6.chrUn_NW_020109973v1 919 3 + 6698 --cat s anaPla1.KB755629 110 2 + 942 --t-t i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 932 1 - 4378 --T-- i fulGla1.KK602514 I 49 I 6 s mesUni1.JJRI01030922 103 3 + 797 GAT-- i mesUni1.JJRI01030922 C 0 C 0 a score=236.000000 s galGal6.chrUn_NW_020109973v1 922 6 + 6698 gccagg s anaPla1.KB755629 112 6 + 942 tccatg i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 106 6 + 797 TACGGG i mesUni1.JJRI01030922 C 0 C 0 e fulGla1.KK602514 933 6 - 4378 I a score=-399.000000 s galGal6.chrUn_NW_020109973v1 928 7 + 6698 ggcttca s anaPla1.KB755629 118 7 + 942 ggggtgg i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 939 7 - 4378 ATCCTGA i fulGla1.KK602514 I 6 I 32 s mesUni1.JJRI01030922 112 7 + 797 GTCCCCA i mesUni1.JJRI01030922 C 0 C 0 a score=1109.000000 s galGal6.chrUn_NW_020109973v1 935 43 + 6698 gtttggggtgtggggcatCCCCATGGTGGAGATTTGGAGGTCC- s anaPla1.KB755629 125 42 + 942 ttttggggttcctgg-atccccatggtgtggttttggggtgcc- i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 119 40 + 797 --CAgggatttttggggtcccccca--gGGGTTTTGATGGATTT i mesUni1.JJRI01030922 C 0 C 0 e fulGla1.KK602514 946 32 - 4378 I a score=-6296.000000 s galGal6.chrUn_NW_020109973v1 978 24 + 6698 CCATGGCTGATT--------------------TGGGGTGCACAA-- s anaPla1.KB755629 167 44 + 942 cagggggtggATATGGGATGATTTTGGGGTCCTGGGGTCCCCAT-- i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 978 16 - 4378 ----------------------------CACTCGGCACAGTCAA-- i fulGla1.KK602514 I 32 I 31 s mesUni1.JJRI01030922 159 17 + 797 -----------------------------CCATGGGGTTTTGGGTG i mesUni1.JJRI01030922 C 0 C 0 a score=-1809.000000 s galGal6.chrUn_NW_020109973v1 1002 29 + 6698 TGTGA------TGGGAAGGCATAAAAGGAGGGGAT s anaPla1.KB755629 211 27 + 942 TGTGTGG-TTTTGGGCTGGTTT-------GGGAAT i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 176 23 + 797 -----GGATCTGGGGTCCCCAC-------AGGGAT i mesUni1.JJRI01030922 C 0 C 0 e fulGla1.KK602514 994 31 - 4378 I a score=2129.000000 s galGal6.chrUn_NW_020109973v1 1031 16 + 6698 CCTTGGGTCCCCACAG s anaPla1.KB755629 238 16 + 942 CCTTGGGTCTCCATGG i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 1025 15 - 4378 CCTGGAGAGTGCAGA- i fulGla1.KK602514 I 31 I 40 s mesUni1.JJRI01030922 199 16 + 797 TTTTGGGTCCCCACAG i mesUni1.JJRI01030922 C 0 C 0 a score=75.000000 s galGal6.chrUn_NW_020109973v1 1047 34 + 6698 GCAGGTTTGGGGT--TCCTGTTGAGATCTGGGGTAG s anaPla1.KB755629 254 26 + 942 GATGGTTTTGGGG--TCCTGTGATTCTC-------- i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 215 31 + 797 GGATGTTTGGGGGGTTTctgtgggattttgg----- i mesUni1.JJRI01030922 C 0 C 0 e fulGla1.KK602514 1040 40 - 4378 I a score=-1523.000000 s galGal6.chrUn_NW_020109973v1 1081 13 + 6698 GGGCAATGGGGCA-------- s anaPla1.KB755629 280 8 + 942 -----Atgggggt-------- i anaPla1.KB755629 C 0 C 0 s fulGla1.KK602514 1080 13 - 4378 AGGCAGCGGGGAC-------- i fulGla1.KK602514 I 40 I 23 s mesUni1.JJRI01030922 246 13 + 797 --------gggtcaCCTcatg i mesUni1.JJRI01030922 C 0 C 0 a score=2322.000000 s galGal6.chrUn_NW_020109973v1 1094 15 + 6698 GGTTGAGGGGTCccc s anaPla1.KB755629 288 15 + 942 gttttgggggtTCCT i anaPla1.KB755629 C 0 C 0 s mesUni1.JJRI01030922 259 15 + 797 gattttggggtcccc i mesUni1.JJRI01030922 C 0 N 0 e fulGla1.KK602514 1093 23 - 4378 I a score=146.000000 s galGal6.chrUn_NW_020109973v1 1109 5 + 6698 tgacc s anaPla1.KB755629 303 5 + 942 GGATC i anaPla1.KB755629 C 0 N 0 e fulGla1.KK602514 1093 23 - 4378 I a score=0.000000 s galGal6.chrUn_NW_020109973v1 1114 17 + 6698 cagacactgacctggaa e fulGla1.KK602514 1093 23 - 4378 I a score=222.000000 s galGal6.chrUn_NW_020109973v1 1131 11 + 6698 ctgcacgGCCT s fulGla1.KK602514 1116 11 - 4378 CCATTCAGCCC i fulGla1.KK602514 I 23 I 12 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1142 12 + 6698 CGGCTTCTGGAG e fulGla1.KK602514 1127 12 - 4378 I a score=38.000000 s galGal6.chrUn_NW_020109973v1 1154 3 + 6698 GTG s fulGla1.KK602514 1139 3 - 4378 GCA i fulGla1.KK602514 I 12 N 0 a score=182.000000 s galGal6.chrUn_NW_020109973v1 1279 2 + 6698 TT s phoRub1.JJRE01105129 1428 2 + 9170 TT i phoRub1.JJRE01105129 N 0 I 34 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1281 34 + 6698 GTCTTCTCTGGCAACAGGAGGAAGAGACAGTGAG e phoRub1.JJRE01105129 1430 34 + 9170 I a score=-114.000000 s galGal6.chrUn_NW_020109973v1 1315 1 + 6698 G s phoRub1.JJRE01105129 1464 1 + 9170 T i phoRub1.JJRE01105129 I 34 I 33 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1316 38 + 6698 ACGATGACAATGACAATGGCAGAAGCACAGcccccccc e phoRub1.JJRE01105129 1465 33 + 9170 I a score=262.000000 s galGal6.chrUn_NW_020109973v1 1354 17 + 6698 actgc-tgccaccaggtt s phoRub1.JJRE01105129 1498 18 + 9170 gctgcttgGCGCTAGAAT i phoRub1.JJRE01105129 I 33 I 109 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1371 86 + 6698 cctgctgggacccccattgTCACCTGTGGGGTCAAAGTGATTAGGTGTCCCCGTACACAGCCCCACCtcagtggatgagggatgca e phoRub1.JJRE01105129 1516 109 + 9170 I a score=100.000000 s galGal6.chrUn_NW_020109973v1 1457 1 + 6698 g s phoRub1.JJRE01105129 1625 1 + 9170 G i phoRub1.JJRE01105129 I 109 I 17 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1458 17 + 6698 tgacactgtcagccatg e phoRub1.JJRE01105129 1626 17 + 9170 I a score=100.000000 s galGal6.chrUn_NW_020109973v1 1475 1 + 6698 g s phoRub1.JJRE01105129 1643 1 + 9170 G i phoRub1.JJRE01105129 I 17 I 34 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1476 42 + 6698 gtgagaaggggagCACCGAATggggctcagacctacctggga e phoRub1.JJRE01105129 1644 34 + 9170 I a score=-31.000000 s galGal6.chrUn_NW_020109973v1 1518 1 + 6698 t s phoRub1.JJRE01105129 1678 1 + 9170 C i phoRub1.JJRE01105129 I 34 I 61 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1519 82 + 6698 tgcaggtctgggaatcacttccagggtcacattatccccaaggggtgagaacagaaggcagcagccctgatgcggtaggagc e phoRub1.JJRE01105129 1679 61 + 9170 I a score=-31.000000 s galGal6.chrUn_NW_020109973v1 1601 1 + 6698 a s phoRub1.JJRE01105129 1740 1 + 9170 G i phoRub1.JJRE01105129 I 61 I 24 a score=0.000000 s galGal6.chrUn_NW_020109973v1 1602 24 + 6698 cctataggtgccggAGTCAGCtgg e phoRub1.JJRE01105129 1741 24 + 9170 I a score=331.000000 s galGal6.chrUn_NW_020109973v1 1626 10 + 6698 gtcaccccaa s phoRub1.JJRE01105129 1765 10 + 9170 GACCCACCAA i phoRub1.JJRE01105129 I 24 N 0