##maf version=1 scoring=roast.v3.3 a score=591.000000 s galGal6.chrUn_NW_020109984v1 297 47 + 6958 TACACAAGATATGGGTATA------------CTATAATGCACACCCCTGTTTTTAGCAT s melGal5.chrUn_NW_011187910v1 4 59 + 537 TACACACCGTATTGGTGTAACACGTGTGCTCCTTCActgcaaaaacatttccttagaGT i melGal5.chrUn_NW_011187910v1 N 0 N 0 a score=3321.000000 s galGal6.chrUn_NW_020109984v1 436 246 + 6958 ggtctgtgctgctgtccccagtgggATGGCAGAGGAAAGTGCAGTGGGGAAAGAGTGTGTTACCCAAAGTGCAtggtgacagcaggctggatgtgctggggatggcacgTGGCATGCCATGTGGGACAGCCCATTGGAGCCATGTATAGTGTGTCTGGCATCCTATGGGGGACAGAGTGCAAGGCCACATGATGGGGGCTCCTTGGGGACTTGAGAGGT-----------------GACAGCCTGCGTGGGGCACAGCAATgg s apaSpi1.KB928572 1496377 228 + 2078205 GGCTTGCTCTTTTGTCTCCC-CGGGCTGGGCGGTGACCgccctgtggggaggggg----------------------gtgagaaGTCTGCATGAGCTGGGGGCTGCCCGGG--------TGTGGGTCAGGCTTCATTAGCCATGCATTACGTGTCAGAGCCCCTCTGGGGGACAGAATGCAAGGACCCCTCAGGAGAGC----CGGGGTATTGTGATGCAAATGGGGCCGGGCTGGAACCATGTGCGAGGGGCCAAGGGATGG i apaSpi1.KB928572 N 0 N 0 a score=1032.000000 s galGal6.chrUn_NW_020109984v1 2381 816 + 6958 CCTAACTTTACATGcctcccaaatcc--agcccatggggaacccaaaatctgcatcGCGGGGAATCCCTAGACACAAAATCTCAGCCTCGAGACCCATCGGAGCCCTCCAGGCCCTAAGCACACCACAGATCCCATAgtgcacccacaaacccactaGAAG----GTACCCCAAAAACCGCTCATATGGAACCCCAATCTATGACCCACAGGGATGACAAATCTAATCTGCTATGGTCCCACAATCCCTTAACAC--TCCAGaccccgtgggcacccccaaaccacagcaggacccccaaccatccccccttgggatccccaAATAGAAGGCCcgcacagctccagaccctccCTCTTGAACACCACTCCCAAATACCAACACA-ATCAGTCCCCCTTCAAAGCATGTGGGagacccccatggtggcaccccgctgttcccctgtgtctGCAGGTGccccccccAGTGACAGTGAGCGTCTGACCTACGCCGAAAT----TCATGCTGTGACCCCTGCT----CCCCGGCCATCCATCAGCCCCCATTATCTACacccatgtgggcagtgggggacCCCTGCTGATACCCCCACACCcacagtgcttcatttttaaggcGCTCTGAATGGGACACACCCAAATTCC------CCACTTGGAGCTCCATGATACAGCAATCCCATCCTTATACCCCTAA---ATCCCAAAAatcaaacatccccaaatcctcccctgtgcagctcatctcatttAAAGTCCACCAAATCCCTGAATTCTCCTCtctcacccccaaatccttcctgatTCCCCTCAAATCCTGTA-ACAT------CCCTTGAGAtctctc s oryLat2.scaffold4962 3956 722 - 4772 CCTGACCCTGAACACATCTCAGACCCTAAACACATCTCAGACCCTGAAC--ACATCTCAGA----CCCTAAACACA---TCTCAGACCCTGAACACATCTTAGACCTCCTGACCCTGAACACATCTCAGACCCTA-AACACATCT-CAGACCCTGAACACATCTCAGACCCTGAACACCTCTCA----GACCTCC------TGACCCTGA------ACACATCT-----------------CAGACCCTGAACACATCTCAGAACCTGAACTCATCTCAGACCCTGAACACATCTCAGACCCTGAACACATCTCAGACCCTGAACACA----TCTCAGACCTCCTGACCC-------TGAACA-CATCTCAGAACCTGAACTCATCTCAGACCCT-----GAACACATCTCAGACCCTGA-----ACACCTCTCAGACCTCCTGACCCTGAA----CACCTCTCA--GACCCTGAACACATCTCAGACCCTGAACTCATCTCAGACCCTGAACACATCTCAGACCCTGAACACATCTCAGACCTCCTGA---------------------------CCCTGAACACATCTCATAACCTGAA----CTCATCTC--AGACCCT-------GAACACATCTCAGACCCTGAACACCTCTCAGACCTCC-TGACCCTGAACACC---TCTCAGACCCTGAACACATCTCAGACCCTGAACACCTCTCAGACCTCC----TGACCCTGAACACATCTCAGACCTCCTGA--CCCTGAA--CACATCTCAGACCTCCTGACCCT---GAACACCTCTCAGACCCTGAACACATCTCAGACCCTGAACACCTCTC i oryLat2.scaffold4962 N 0 N 0 a score=670.000000 s galGal6.chrUn_NW_020109984v1 6474 64 + 6958 CATGCATTCCTTACCAGTCTCAGAaagcatgc-taaggacacacgTGCACTACTGTG--CACATATA s petMar3.PIZI01000016v1 6983372 67 - 15919453 CATTTAGTCGACGACAAACTCAaaaaacgcgcgcgcgcacacgtgtgcattGACACGACCAaacaca i petMar3.PIZI01000016v1 N 0 C 0 a score=3558.000000 s galGal6.chrUn_NW_020109984v1 6538 68 + 6958 ----------------------------------CTGGTGTACACACGtggcatcgcacagacacaaAG-------GAACAGAGTTAG---TCACGGAGTGACATCTGTGTA s allMis1.JH735521 161412 73 - 280163 ----------------------------------CAGGTCAACACACCTGCCCCCACATTCACATTAAGGGCCTGAGGGCAAAGGTGGGGTTCATGGAGTGATATTT----- i allMis1.JH735521 N 0 C 0 s allSin1.KE696222 828413 73 - 2066398 ----------------------------------CAGGTCAACACACCTGCCCCCACATTCACATTAAGGGCCTGAGGGCAAAGGTGGGGTTCATGGAGTGATGTTT----- i allSin1.KE696222 N 0 C 0 s petMar3.PIZI01000016v1 6983439 98 - 15919453 cccacgtacacacgAATGCACAACCTGCAATTTGCACGACCACACACGTGTCGACACAGGCATATTCAA---------ACACGTGCACGTTCAAACGCATGTATTTT----- i petMar3.PIZI01000016v1 C 0 C 0 a score=-501.000000 s galGal6.chrUn_NW_020109984v1 6606 4 + 6958 --CAAC s fulGla1.JJRN01003966 255 4 - 537 --CAAG i fulGla1.JJRN01003966 N 0 I 57 s petMar3.PIZI01000016v1 6983537 4 - 15919453 CACA-- i petMar3.PIZI01000016v1 C 0 C 0 e allSin1.KE696222 828486 0 - 2066398 C e allMis1.JH735521 161485 0 - 280163 C a score=2158.000000 s galGal6.chrUn_NW_020109984v1 6610 58 + 6958 TGTTGTGCACATGTGATGGTGCACACGCAGGTAACATATGAACACATGCAGTGGTACC s allMis1.JH735521 161485 55 - 280163 --TTTGGCCCATGCCATGCAGGATGTCCAATGAACG-ATTATAACGACCCATGGTAAC i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828486 55 - 2066398 --TTTGGCCCGTGCCATGCAGGATGTCCAATGAACA-ATTATAACGACCCATGGTAAC i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983541 53 - 15919453 -CGTTCGCACAT---ATGTATGTGATAACACAGACGTGTGATCACATAC-ATCATAGC i petMar3.PIZI01000016v1 C 0 C 0 e fulGla1.JJRN01003966 259 57 - 537 I a score=173.000000 s galGal6.chrUn_NW_020109984v1 6668 2 + 6958 TG s amaVit1.AOCU01184776 748 2 + 865 GG i amaVit1.AOCU01184776 N 0 N 0 s allMis1.JH735521 161540 2 - 280163 AG i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828541 2 - 2066398 AG i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983594 2 - 15919453 AA i petMar3.PIZI01000016v1 C 0 C 0 e fulGla1.JJRN01003966 259 57 - 537 I a score=-303.000000 s galGal6.chrUn_NW_020109984v1 6670 6 + 6958 TATGCA- s allMis1.JH735521 161542 4 - 280163 --CGCA- i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828543 4 - 2066398 --CGCA- i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983596 5 - 15919453 --CATAT i petMar3.PIZI01000016v1 C 0 C 0 e fulGla1.JJRN01003966 259 57 - 537 I a score=-1914.000000 s galGal6.chrUn_NW_020109984v1 6676 8 + 6958 GTgcacac-- s fulGla1.JJRN01003966 316 7 - 537 A-ACACGC-- i fulGla1.JJRN01003966 I 57 I 50 s allMis1.JH735521 161546 6 - 280163 --ATGGGC-- i allMis1.JH735521 C 0 I 2 s allSin1.KE696222 828547 6 - 2066398 --ATGGGT-- i allSin1.KE696222 C 0 I 2 s petMar3.PIZI01000016v1 6983601 8 - 15919453 --GCGCATAC i petMar3.PIZI01000016v1 C 0 C 0 a score=-182.000000 s galGal6.chrUn_NW_020109984v1 6684 40 + 6958 gtg----atgg--tgagcacacacaacacaagTGCAC-TGTGCATGC s allMis1.JH735521 161554 38 - 280163 GTGCCTCGTTG--TGGTGCCCCGT------AGTGCAC-CGCCTGAGC i allMis1.JH735521 I 2 C 0 s allSin1.KE696222 828555 38 - 2066398 GTGCCTCATTG--TGGTGCCGCGT------AGTGCAC-TGCCTGGGC i allSin1.KE696222 I 2 C 0 s petMar3.PIZI01000016v1 6983609 39 - 15919453 --------TCGACTATTTACACGCAACTAAAGAGATCATGCACGTGC i petMar3.PIZI01000016v1 C 0 C 0 e fulGla1.JJRN01003966 323 50 - 537 I a score=-1294.000000 s galGal6.chrUn_NW_020109984v1 6724 1 + 6958 -T s fulGla1.JJRN01003966 373 1 - 537 -T i fulGla1.JJRN01003966 I 50 I 15 s allMis1.JH735521 161592 1 - 280163 -T i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828593 1 - 2066398 -T i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983648 1 - 15919453 A- i petMar3.PIZI01000016v1 C 0 C 0 a score=2366.000000 s galGal6.chrUn_NW_020109984v1 6725 15 + 6958 G-GAAGC--------ATGTGTGCA s allMis1.JH735521 161593 24 - 280163 GTGAAGCCTTGTCCTACGTGCACA i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828594 24 - 2066398 GTGAAGCCTTGTCCTACGTGCACA i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983649 15 - 15919453 -GGAGAC--------ATATGTGCA i petMar3.PIZI01000016v1 C 0 C 0 e fulGla1.JJRN01003966 374 15 - 537 I a score=-2071.000000 s galGal6.chrUn_NW_020109984v1 6740 2 + 6958 -TA s fulGla1.JJRN01003966 389 2 - 537 -GG i fulGla1.JJRN01003966 I 15 N 0 s allMis1.JH735521 161617 2 - 280163 -CA i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828618 2 - 2066398 -CA i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983664 2 - 15919453 TT- i petMar3.PIZI01000016v1 C 0 C 0 a score=10076.000000 s galGal6.chrUn_NW_020109984v1 6742 41 + 6958 CAACACACACGTGTTTGTGCACACGTATGGAGGCATCAGTG s allMis1.JH735521 161619 41 - 280163 TGTAAAACACGTGTGTGTGCACATGTATGCATTCATCAACG i allMis1.JH735521 C 0 C 0 s allSin1.KE696222 828620 41 - 2066398 TGTAAAACACGTGTGTGTGCACATGTATGCATTTATCAATG i allSin1.KE696222 C 0 C 0 s petMar3.PIZI01000016v1 6983666 41 - 15919453 CACACAACACGAACACATGCATACGCATGTACGCATATGTG i petMar3.PIZI01000016v1 C 0 N 0 a score=3392.000000 s galGal6.chrUn_NW_020109984v1 6783 31 + 6958 GCGCCCCCAACGGCCACCTCGGTGTAGATAA s allMis1.JH735521 161660 31 - 280163 TCACCCCACACCCTTTTCTCCTTGCAGCGAA i allMis1.JH735521 C 0 N 0 s allSin1.KE696222 828661 31 - 2066398 TCACCCCACACCCTTTTCTCCTTGCAGCGAA i allSin1.KE696222 C 0 N 0