##maf version=1 scoring=roast.v3.3 a score=64.000000 s galGal6.chrUn_NW_020109996v1 1591 50 + 8110 cttttca--------agagagaga-gcatccttccg-gctctctcggtgt---ccctgaagag s cotJap2.chr1 61372077 63 - 175656249 CTGATTAGTCTGGGTAGAGAGAGATGCATCTTTGCATGGCCTGGCAATGCACGCCAGGAAGGG i cotJap2.chr1 N 0 I 472 a score=0.000000 s galGal6.chrUn_NW_020109996v1 1641 465 + 8110 ctgccttaaaagcttcatttccttgctagtggcatcgagatggcaccctgaaatcctccttgtttgtcctcagctcctcaccatggcctgtgctctctgtttcagcctgagaaccaggggaagcctctgctggtccgtgaggagtcatctcttaatattccagctattgctgctggccatgttattaagagatacattgcccaggcagcggatgagctctccttggaggtaagcagataaagaaggcgttccttgttgtcacggacagaagagtataccgtgtgaatgcatcaggaatattctcagacaccttcagaatgccttgtgaggcgaagcccagaagatgcaggtccagataggacttgcactgggttggatgcagggaggagttcagccatgtctaaaagacgttttatttggcatgcttgcactgtattctgtctggtgtgtaaggcagtgactctt e cotJap2.chr1 61372140 472 - 175656249 I a score=-772.000000 s galGal6.chrUn_NW_020109996v1 2106 14 + 8110 gtacctccacgttc s cotJap2.chr1 61372612 12 - 175656249 CTGAT--CAAGCAG i cotJap2.chr1 I 472 I 242 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2120 251 + 8110 agctttcccacgggaaatgcctgaagagctgccccggtgcaattgctctcaagctgtgcgctctttggcagtgcagaagaagggtgccatttcagctgtgctttcctcccagctgtgctgacgctgggattgatgttgcaatgtcttgcaggtgggagacctggtgtgcgttcttgatatgccagcaaaggagcagagcccctggtggagaggcaagcatggctttcaggtaggcacgagcttcagactcc e cotJap2.chr1 61372624 242 - 175656249 I a score=-23.000000 s galGal6.chrUn_NW_020109996v1 2371 2 + 8110 tg s cotJap2.chr1 61372866 2 - 175656249 TT i cotJap2.chr1 I 242 I 44 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2373 42 + 8110 ggcgcaattgcagtcaagtgaggaacgtcagcttcgagctgc e cotJap2.chr1 61372868 44 - 175656249 I a score=-23.000000 s galGal6.chrUn_NW_020109996v1 2415 2 + 8110 tc s cotJap2.chr1 61372912 2 - 175656249 ta i cotJap2.chr1 I 44 I 40 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2417 50 + 8110 ggcctccacagggtggcttctggacgtcaacagcttccctgtgtcgctgt e cotJap2.chr1 61372914 40 - 175656249 I a score=-270.000000 s galGal6.chrUn_NW_020109996v1 2467 3 + 8110 cag s cotJap2.chr1 61372954 3 - 175656249 agc i cotJap2.chr1 I 40 I 104 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2470 97 + 8110 aggactttccctttggctctgggcttgggtgggaaactgtctcctcatgtgacttagaagcaagagcctcttgtgctcaataggcagtcaggagttg e cotJap2.chr1 61372957 104 - 175656249 I a score=69.000000 s galGal6.chrUn_NW_020109996v1 2567 2 + 8110 ag s cotJap2.chr1 61373061 2 - 175656249 GG i cotJap2.chr1 I 104 I 12 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2569 12 + 8110 catctctgtcct e cotJap2.chr1 61373063 12 - 175656249 I a score=91.000000 s galGal6.chrUn_NW_020109996v1 2581 1 + 8110 t s cotJap2.chr1 61373075 1 - 175656249 T i cotJap2.chr1 I 12 I 13 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2582 13 + 8110 tgtacaagcacgg e cotJap2.chr1 61373076 13 - 175656249 I a score=-31.000000 s galGal6.chrUn_NW_020109996v1 2595 1 + 8110 a s cotJap2.chr1 61373089 1 - 175656249 G i cotJap2.chr1 I 13 I 22 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2596 10 + 8110 gaacagccat e cotJap2.chr1 61373090 22 - 175656249 I a score=100.000000 s galGal6.chrUn_NW_020109996v1 2606 1 + 8110 c s cotJap2.chr1 61373112 1 - 175656249 C i cotJap2.chr1 I 22 I 73 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2607 70 + 8110 ttatgctccgtcagttgcttttgtaggtcttctggctgcaaatgttgaatgagggttacttttctgcagg e cotJap2.chr1 61373113 73 - 175656249 I a score=229.000000 s galGal6.chrUn_NW_020109996v1 2677 13 + 8110 ccattctttcttg s cotJap2.chr1 61373186 13 - 175656249 ACCTTCCCTTTGG i cotJap2.chr1 I 73 I 15 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2690 22 + 8110 gttgaacagttgaggcctgaga e cotJap2.chr1 61373199 15 - 175656249 I a score=373.000000 s galGal6.chrUn_NW_020109996v1 2712 4 + 8110 aatg s cotJap2.chr1 61373214 4 - 175656249 AATG i cotJap2.chr1 I 15 I 233 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2716 232 + 8110 ctgcattcagtattccatctctcttcttgatcttgttccaggttggatttttccctggtgagtgcgtggagctcatcaacggaaaaattcctgaggccctcatcaattcagcgccaaagccaggtacggatgttacatgtgatggcgcggggaaatcaaatggagtctttttctgggtgtgttctgtgttgaatacctcctttatccatcccacgttctcctctgtgttgat e cotJap2.chr1 61373218 233 - 175656249 I a score=-5.000000 s galGal6.chrUn_NW_020109996v1 2948 39 + 8110 gatccttcctgcatcccacggggcgtagggctgctgttt s cotJap2.chr1 61373451 28 - 175656249 GATCTGGCCCA-ATCCCACTGTGTTTA----------TT i cotJap2.chr1 I 233 I 532 a score=0.000000 s galGal6.chrUn_NW_020109996v1 2987 18 + 8110 tgtaggcagtgagaatga e cotJap2.chr1 61373479 532 - 175656249 I a score=10761.000000 s galGal6.chrUn_NW_020109996v1 3005 181 + 8110 gggcttgggcaaacgataggatccttgtagaatggcttgggatggaagggacctcaaggatcatcaagctccaacccccgtgcctcaggcagggctgccaacct----ccacttcgaatgccagactagaccaggctgcccagggccccatccaacctggccttggactcctcc---agggacgggga s melGal5.chr2 83724731 187 + 109662234 ggacttggggaaatcctaaAATCctcgtagaatggcttggggtgGAAGGGAGCTGAAGGATCATCGAGCTCCAAACCCCTT-CCTCAGGCTGGGCTGCCAACCTAGCCCCACATTTAATGTGAGATGAGACCCCGCTGTCCAGGGCctcctccagcctggccttgggctcctcctgcagggatgggga i melGal5.chr2 N 0 I 6 e cotJap2.chr1 61373479 532 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3186 6 + 8110 aaatct e melGal5.chr2 83724918 6 + 109662234 I e cotJap2.chr1 61373479 532 - 175656249 I a score=100.000000 s galGal6.chrUn_NW_020109996v1 3192 1 + 8110 g s melGal5.chr2 83724924 1 + 109662234 G i melGal5.chr2 I 6 I 12 e cotJap2.chr1 61373479 532 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3193 12 + 8110 ttgttgtaggta e melGal5.chr2 83724925 12 + 109662234 I e cotJap2.chr1 61373479 532 - 175656249 I a score=100.000000 s galGal6.chrUn_NW_020109996v1 3205 1 + 8110 c s melGal5.chr2 83724937 1 + 109662234 C i melGal5.chr2 I 12 I 608 e cotJap2.chr1 61373479 532 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3206 431 + 8110 ttgttggcaatgttcttcccgcTTTTACGTGCTCTGTCGAATGTGTGACGCTcggcctggtcccactgagcccaacctgaaatgaactggtttcttccttttgttgtgcagtgccaaagaagcgtggcaagctcctcagcttccttcgttccttcgtgaaggcccgcccagaggaaccgaagcagcgggagatggagctggagaaggagaaggaggggtgtttggctgtgacctgggagagcatcttctccactctggccgtgatggtaaggaacagcccgttcctgagagcttcctcctctgttgggcatgtaaagatgaaagaaagggagatcatgtctagcaaggggcaggttgatagcggtggagaagcgtgaaatgggagttggctgaaagggaagctgaggctaatgctcataggaggccggcac e melGal5.chr2 83724938 608 + 109662234 I e cotJap2.chr1 61373479 532 - 175656249 I a score=-154.000000 s galGal6.chrUn_NW_020109996v1 3637 2 + 8110 ac s cotJap2.chr1 61374011 2 - 175656249 TT i cotJap2.chr1 I 532 I 1567 e melGal5.chr2 83724938 608 + 109662234 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3639 176 + 8110 ttttatttgcttaaagccaaaggtgtaagccaatcccacgctagcctgaaaaccaaggaagccttttggcccaagagagtgtagtgcgtcagtttcctagctcttctggacatgaggtctcacgcctccattgcggtgggagctgtgatgggacttgtggcagtgtctctggcttc e melGal5.chr2 83724938 608 + 109662234 I e cotJap2.chr1 61374013 1567 - 175656249 I a score=300.000000 s galGal6.chrUn_NW_020109996v1 3815 3 + 8110 ccc s melGal5.chr2 83725546 3 + 109662234 CCC i melGal5.chr2 I 608 I 7 e cotJap2.chr1 61374013 1567 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3818 7 + 8110 agaatta e melGal5.chr2 83725549 7 + 109662234 I e cotJap2.chr1 61374013 1567 - 175656249 I a score=1168.000000 s galGal6.chrUn_NW_020109996v1 3825 24 + 8110 ctttctgcaggctgcttggcaggt s melGal5.chr2 83725556 24 + 109662234 ctttctccaggctgattccTAGGC i melGal5.chr2 I 7 I 73 e cotJap2.chr1 61374013 1567 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3849 51 + 8110 ctggcatttcttgaaagccaagaacacgtccgtgtccagttttgtccccgg e melGal5.chr2 83725580 73 + 109662234 I e cotJap2.chr1 61374013 1567 - 175656249 I a score=-23.000000 s galGal6.chrUn_NW_020109996v1 3900 2 + 8110 ct s melGal5.chr2 83725653 2 + 109662234 CA i melGal5.chr2 I 73 I 53 e cotJap2.chr1 61374013 1567 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3902 16 + 8110 cctgcctgtctgcgcc e melGal5.chr2 83725655 53 + 109662234 I e cotJap2.chr1 61374013 1567 - 175656249 I a score=437.000000 s galGal6.chrUn_NW_020109996v1 3918 8 + 8110 gtctgcga s melGal5.chr2 83725708 8 + 109662234 GGCTGTGA i melGal5.chr2 I 53 I 78 e cotJap2.chr1 61374013 1567 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3926 20 + 8110 cagcctttttctcctctaag e melGal5.chr2 83725716 78 + 109662234 I e cotJap2.chr1 61374013 1567 - 175656249 I a score=246.000000 s galGal6.chrUn_NW_020109996v1 3946 6 + 8110 gaggag s melGal5.chr2 83725794 6 + 109662234 gcAGAG i melGal5.chr2 I 78 N 0 e cotJap2.chr1 61374013 1567 - 175656249 I a score=0.000000 s galGal6.chrUn_NW_020109996v1 3952 1230 + 8110 gcaagcagtagcctggctgggcttagtggatgggatgtgacaggggcagcggctgaagcaggacttgaatcaggagctcagctaagcgctggcccttgttctgtagtcccccaggtcgtgcagagctgcgctgagttcattgagcagcacggcgtggtgcaggggatctaccgcctgtccggcgtggcgtccaagatccagaagctgcggtaagagtgcttctggactgtatgttgtcttgctttggagttgttttcctctttctccaagccctctgtttttgtgtccttctctccagccatgactttgagtcggagcagattccggagctcaccgtccgggacattcacagcgtgagctccctgtgcaagatgtacttcagggagctgcccgagccctctgctgagcgagcagctgcatggcaagttctcgtaagcacaaggcaatggccttcatgtccctcttcccgGGCCTCTTGGCGTGGCCTGTCCCAtacacacgcctgcgcacctcatggtcttttttttctgattttctgttagccccatgtGGCAGCCTCGCATGTCTCTCCCACATCCTGTAGCAAGCACAATGCTTGCGAGAATTCCTGTTCTTTTGCTATTCCCCAACTATTTCTGGAACGGGAATGGGATTAATAGCACAGGTTACTGGAAGATGAATGCCCATTgcgaggagctgaggtgcaGAACCGATCAGGCTGTCAAGCGGCCCAGTGCTTGGACTGCTTGGCCTTGATGGCACCAGCTGCGTgccgctgtgttccccagcttttctgcctgttggaaggcataaaatccgcctcggtgctgagcaacagcgcTCCGTCCCCGTAGTTGCCGACCCTGCGGCAGGTATCTCTACTGATGTGTGTCtcaatccctttctgctttcttccaggacgctgtttgtgccggtaccgatgaggagcggttgctcagaatgcaggaggtcatccagcagctgcccgcgcctcactacaggtcagaaaactgctgccctcggtgtggggagctcagccctgctgcacttcagagggcaATGATGCAATGCAGGCTTTgtgtcacgctggcaacgtgatgcctgtgtgtgttgaagtggtggatggctgcgtgaggtgaatggattgggtcagctcctgggcacggggcacggctggtgcagctgatggctgcagctgtgctgtgctggggcttggtgctgcagcgtggc e cotJap2.chr1 61374013 1567 - 175656249 I a score=-31.000000 s galGal6.chrUn_NW_020109996v1 5182 1 + 8110 t s cotJap2.chr1 61375580 1 - 175656249 C i cotJap2.chr1 I 1567 I 366 a score=0.000000 s galGal6.chrUn_NW_020109996v1 5183 263 + 8110 cTTGGGgaagcttgatctacttgctagtagcaagaacagtgaggtttgtttggtgaatgtgagcacggcgtgctcagtggtgctgaaggtttggctcttgctttccaggacgctggagtacctgctgagacacttggcttgtctcgctgggagctgctccgtcacaaacatgcctgctaagaacttagcgattgtgtgggctcccaacctcttcaggtaaacttctttttccgtctcagcacaaggcttaggtctgttctccc e cotJap2.chr1 61375581 366 - 175656249 I a score=235.000000 s galGal6.chrUn_NW_020109996v1 5446 6 + 8110 cacggg s cotJap2.chr1 61375947 6 - 175656249 CAGAGG i cotJap2.chr1 I 366 I 3 a score=0.000000 s galGal6.chrUn_NW_020109996v1 5452 3 + 8110 cac e cotJap2.chr1 61375953 3 - 175656249 I a score=-5.000000 s galGal6.chrUn_NW_020109996v1 5455 5 + 8110 acttt s cotJap2.chr1 61375956 5 - 175656249 AGCCT i cotJap2.chr1 I 3 N 0 a score=100.000000 s galGal6.chrUn_NW_020109996v1 6156 1 + 8110 g s cotJap2.chrZ 4826138 1 + 67000979 G i cotJap2.chrZ N 0 I 89 a score=0.000000 s galGal6.chrUn_NW_020109996v1 6157 89 + 8110 cacaggggaaattccacacaatcattgactttccgtctgaaaggtaaagaggactttcttttccagcagcttcctatcagacttggttg e cotJap2.chrZ 4826139 89 + 67000979 I a score=-255.000000 s galGal6.chrUn_NW_020109996v1 6246 10 + 8110 ttTGGGCATT s cotJap2.chrZ 4826228 8 + 67000979 GT--GGTTTT i cotJap2.chrZ I 89 N 0