##maf version=1 scoring=roast.v3.3 a score=-3898.000000 s galGal6.chrUn_NW_020110047v1 376 1602 + 11985 cccactggtggggc---acagccaccttcacccactTAGAGGGGACTCtggccactgcagcaccaataAAAAATCCTACAACCCCAAGGGCcacacatttgtgtcctcacccctgtAGATAGCATGGTGGTGGaagtgacacccacacctgcaaccCCAGTTAGGTCGGAGATCCCATTTGTAGGGCCCCAGTGTCACCCAAACACTTggagcccacaggtgccaaggggggtcccatgggaacctggtggtggcagtgctgaggggctgtgctgc-tgtcttggtcttcagcctgggcctctactttgtcctcgatgcccgcagcctctggacacggagagatgagagcgcag----gtgaggaaggactaaaatggtttccat---tccctaTGCATCCACTCAAGTGTCCTCTGCTTATTCTTTGACCCTCTGCAGATCCTTTATGGTTTCCCAGTTGTTCCTCGAGgcccacacataactcccacccttcccccttttctttttgatgcaggtgtcaCCCCTGAGATGCACAAGTCAGTGCAATTCCAGGTAAGGGTCTGAGTCAGTGGaacccaaatcccagttcacttcttggGACCCACACCTCGCATCTCCAcggaaacccaaaccttccccaag-gggaccccaa----gtgac-----ccccaacctcatatggcttaccctcacatttatgTGCACCACCCGtatccagcccttg---ggaaacacaaacctgca-ctgtggggaaccccagc-ccacagatacccctaaatacccagaacaaaagatgccctccaagccttaaacccCATCTAGACCCTGTAGGCAACAATTACTTCACTagaggggcactaaatgcacccacagggaaacccaatgacccatggg-gacaccaaaatTGAGCCTCTGTGTTCCACCAGTCCCTAAACACCTCATGACCCtatgggcaccccaa--------atccacggcTGGACCCCAAACATCCcca-tgcagacctcaaagctaagcccagtcacaaatgcagactcctcctcatggccacacccccacatacctacaccacagacccaccctcagctcactcaTCTTGGGGACCCCCTTGGTAGCACCCcactctcctcctccatctccaggggccctccagggacagcgaggatctgacctacac---cgagatgccagctgccatcccgtgctcccagtctcccactt-----cccccactgccccccagtcccctgtcatctacaccacagtgagcactg----------------atttaccACGCTGATGGGCCTCCC----------agtgtgtggaaggggacagacctcaaattccctgcttgggactccctgatgtcctgttctaaccacaaaccagataacatccccaaatctaacaatcccaCATTCTCACTGGTAcatcccaaatgcttcccagacgca---ccaaatccctaaatgctcatctcttacccca-aagtccttctttatccccGCAAA-----------ACACTTAGCAGA-CCTTGAAACCTCCAAATGctctcccatccactcccaaacaccaccaccattcctctGAGACCCCCTCATCTGTCCCA---------ATCTACCCCTCCTCTTGAGATCCCCAGACacgtccctttgctccc----------------cttccatctcctaCAG s cotJap2.chr4 29929595 1474 - 82189922 cccataagtgagacTCCATACCCATAGgtatgaccccataggggccaatggggaccccagcccca-taagtggtTATACAGATCCATAAG---------TGGGTCCACAGCCCCAGAAGT------GTGACCAAAA----ACCCACAACTATAGACTTAGAGaggtccccagccccataagtgcatccccag-----ccccataagtgtgaccccataggggacaatggagacccca---------------------gccccataggtgTGACCCATAACTGTGTCCACAGCC-----CCATAAATGgttccccagccccataagt----gtgacccataaaTGAGGcttcagccccataagtgggtcctcAGAC-----CCATAAGTGCATCCTCATCCCCATAAGTGTGACCGATAaatg---tgaccccatagggg--------------ccaatggggaccccagcccca----taagtgcctccccagccccat-------------aagtgtgaccctAAAGACTTCAAGatctccccagcccca--------------taagtgggtccccagcccca------taagtgggtccccagccccataactacat-----ccccagcc--ccataagtgggaccccagccccataactgtaaccccagccccataagtgtgatCCA------TAACTACATCCCCAGT------CCCATAAGtgggaacacagccccataactgTG----ACCCCAGCgccataagtgt-------gacccataagtgagg-----cTCCAGTCC------CATATGTGGGTCct-cagac----------ccataagtgggactccaga----cccataagtgtgaccccagacccataagtgtgaccccaacCGCATAACTGTGTTCCTAAatgcctccccagccccataactgcatcTTCAGCTCCATAAGTGTTACCCATAACTACATCCCCAGCCCCTTAAGTGTGACCCTTATCGGtactcccagccccataag-----tgtgacccataactGCATCCCCATCCAC-------ATAAGTGcatcctcagccccataagtgtga----cccataagtgtgaccccat-----------------aggggcc----------aatggggaccccagccccataagtgtgaccccagccccatatgtgtgaacccagccccataagtgtggcccataagtgggccccagccccagAAGTGTGACACCataggggccaatggggaccccagccccataagtgtgacccataagtgcctccccagccccataagtgtgt--------------ccccagccccataatTGTGTCACCataggggccaatggggaccccagccccataagtgtgacca--TTAAatgcctccccagccccataggttcatcccca--gccccataggttcatctccagccccataactgc--atcCCCAGCCACATAACtgcacctccagccccataagtagGAACACAGACCCATATCTGAGTCCCCAGACCCATAAAtgcatctccagcc---ccataactgcatcCCCGATCCCATAA--CTgcctctccagccccataagtgggaacaCAGACCCATATCTgag-tccccagccccataactgcatccccagccccataagtgggtctTCAGCATCCTCAAG i cotJap2.chr4 N 0 I 78 a score=0.000000 s galGal6.chrUn_NW_020110047v1 1978 78 + 11985 ATGCCCTATAGATCCCCTATAAATTCCccaatatttcctgcctcctattctcttccagttttatcattggtctttggg e cotJap2.chr4 29931069 78 - 82189922 I a score=-479.000000 s galGal6.chrUn_NW_020110047v1 2056 61 + 11985 tgctgagcaattcctttgtgcatcacttgctttcaaaaaatatattcatatatctgATCA-T s cotJap2.chr4 29931147 60 - 82189922 TGCTACACGTTCTGCTGTTACTCCAC--GCTCTGGACAGATCCACGCTGACAGCTCTGCAGT i cotJap2.chr4 I 78 N 0 a score=112344.000000 s galGal6.chrUn_NW_020110047v1 2401 2433 + 11985 aagtttctcactcaagcaggaaagcgtttgccttcaatagctga-aTTTTTtatgatacaggtgaggagggggatccatcttctttaattaactggattttcattagtttgataacttctttcattaggcccctttgcttatcctgatcttcgtcaaatgtttctgatactattacgggttcatcacgattaatcagtagagacacctgctcttgtaCTTCACCCActctgtttgctaactctgagacggctgaaatggaaacgtgggttGGGAGTAGATGttgctcatagttttggagtgtaagaatcaattcgaaaactaggggtcttctctgttggtcctcgtatctgtggaatgtgg-taatagtgtgggggcgtatctgtctggtgctgctctcgtaagtttttgccatatttcaggtgttgtcctcactctctccggatcatggttttggcgtggatcattaggagcaaaattagagtcatataacatttccaccagggctatttccctcaaatactggatacctttctcacttgtatcccacgttttcattgcaggctgcagaagttctatGTAGagatacctttccctcacagctattaatatttggtcccagagggttgcagctcc-atccaagcATCTACTAATTCCCCTGTCAATGGATTTGTCtttggcaatgtctcctagttggcgggcttcgttaccatctagagacaagctactgaccccactatcccaacagcgaagcaaGCAGGTGACAATAGTTTTGTACGAACATCGTTCAAATTCCTTccttgagctttggatttcagtcatcttgagaggtcgacgaacagtaatagagatctcctcttcatcgctgtcctcttcatgcctcttagtttttgcttttgcctttct---------tggttctgaggaagtcccttcgcctggatcttcctctacctcctcctccacctcttcttctttttttcgctctagacgtgaggacacccgcttccatttcttgccttctacaggggctactgacactgttactggtgtctgctgtgactgatcaggtctgactggaagatttccccctttggcttgcacctccgctcggaaactctctctctccagaacaatACTATACAGAGcacggtaggcacaagccaagccccagataagCCGTActtcctttgatctatctaagccgcaccgtccctgactcaaatgctggctcagtttctcgggatccctCAGATGctcaagagtgaaatcccatggtaTGGCGGGTCCTCAtgcttctaagattcttcctaaacctttccgTATTCCTTGCCTGTCATCATTCTCTCGTCTTGGAGg---cttcttccacttagcacaA-TGAAGAGCAATACATTCAGGGATATTGATAACACGCA------------CACAAGTATGAGCACTGATTTGGTATTTGAAAAACGTTcgacaaactgagagggaagcctggaaacGGTTC-------------------------------------------------------------------------------GAAAGTCTCAAAATCCAAATTATacaacattgcataaagccaccagacAGGCGCCTCTATCAGCACCCTTACTTGgttatatataaacataattCCACAGCAGGACATCaagaggttaattatagaccggtaactggcaaggaacttgatagcttttaatcccttatacagtgctctgacaataaagagcaacctcatagctggtaactgctaaagggagg----------gggggggaagagaaggagaaaaaaaaaaggaaaacaaacggAAACCACTCGGTAGAGTA------tctggagtttggcggactgcccaggctat--------atcctaatctatgaaggtca----------caccatCACTAGCAATGCTatgtagtctcacagtctggcttaacgaaatcctttt----------------ttcttactaacgttaaagcttcagatgaatcttgCCTGCATTCTCCACAAAAAATTTGTCatggagttacctagatagatctgtgcccatgacaggggggcagtaggctcgcggggCCC--CTCCCCCCTGGCTTGCCGATAAgaaacgg-----------------------------------------------------------------------------------------------agcagcggcaacaatctaagaaggagaagttgttttactaactacgatgttgggatgcaagatgacacgatataatacaatctaattgggagtgaggataataaatcaaatgaaatgggagagagcgaaagagcgatagagagagagagtgagagagagagagtgggagagTTTCCGAAACAGAAAGCCTTACATGATGAAGCt--gcccggcttggaaagcacacc----cactcctctcccggcagcaagcgaaagtgaagaagaaccgcgcgca-----accagatgacgtatcttccgtgatgtgtcttccttctctgaccgtgaggtcctctgggatacg--------tagttcttctctttggac----catgatgttatgatgtggaataccaatagc--gaagttacaaaaccatgacat---tcagactgcaggatgatttcctga s melGal5.chr1_NW_011093093v1_random 1418 2622 - 6247 TA-TTCCTtactggagccggaaagcgtttgcctttaacagctgagatttttgatggtgcaTGTGAGAAGGAGGGTTCATCATCTTTAATTAGTTGGATTtgcattagtttgatcagctcttTCATTAGACTCTTTTGCTTATCCTGATCTTCATCAAGCatttctgatactggcacaggtttgtcatGATTAATCAGTAGAGacatttgctcctgcatttcattcagttggtctgttatttgtgagatggcagcaatggaaacgtgagttgggggtagctgttCTTCATAGTTTTGGAGCctaagaatcaattcaaaaactaagggtcTTCTCTGTTGGTCCTGATATCTGTCAAACGTTGCTGTTAGTGTACtggcatatctgtctggtgctgtt---gtgagtttctgccatatctcaggcgtcgtcctcactc----aGGGTCGTGGTCTTGGCatgggtggttaggaacaaagttagggtcatACAACATTTCCACCACGGCTATTTCCCTCaaatactggatacccttttcaactgtatcccaccttttcatcacaggcttcaagccaTCTTTGAAGGGATACCTTTCCTTCACGGCTATTAACACTCGTTCCCAGAGGGCGGCAGCCCCCATCCAAACAT-TACTAATTCCTCTGTCAATAGCTGgatctctggcaatggctcctagttggcaagcttcattaccatctagaaacaagctacTGGCCCTGCTGTCCCAACAACGAAGCAACCAGGAAACAAGAGTTTCATTCGGGCGTCATGTAAAATTctttcttgagccttggatttcagtcatcttcagaggCCAACGAGTAGTAATAGAGACTTCCTCTTCATCACTCTCTTCTGCAtatctcttagtttttccttttgcctttcccAGTGATagtggttctgaggagggcccctcacCTGGATctttctccacctcctcctccgtttcttctt-tttttttcgtTCTAGAAGCGAGGATgctcgtttccatttcttgccttccacaggagcaactgatattgttactggtgtctcctCTGgttgatcagatttgacttggagattttcccctttggcttgaacctcagcttggaaactctctctctccagaatagtattatatagggtgcggtaagcacaagccaaaccctAAATAAGTTGTACCTTCTTAGATTTATGTAAGTTGCactgtccctgactcaaatactggcTTAGTTTCTTGGGATCCCATGGTTGTTCAAGAGTGAAATCCCATGACATTGTGGGTCTCCATGCTTCTAAGAtttttcctaaacctctccatattccctgccagtcagcattctctggctttggaggagactccttccaCATAACACAAATGAACAGGAAAACATTCAGGAAGATTGATAACATGCACAGGGCTACGCCCACGAACATGAGCATTAACTCAGTATTCAAAAAACGTGtgacaaactgagaagaaagccTGGAAACTGGTCTGAACATCAtgttgtttgtaaaattagccattccatctgggatgtagtttttcataaaattagccattccatctggaatgtaaatgtcaaaattcaaatcataccacattgcatataGGTACCACACAGGTATCTCCATCAGAGCCCTTATTTGGCTATATATGAAcacaattccacaacaagtaattatgacATTGATAATTGGCCAGTAAGTCGCGAGTAACATGATGGCTTTTAATCCCTTACACAGCGCCCCTACGATAAAGAGTGGGTTCATTG-TGGTATCTGCTAAAAAGGAGTTAATGCATTGAAGCTAacaagaggagggaaaaaaaaagaaaaaaaggaaaaaggcactGCCCAGACTAAGCAGTGCTCAAATTTTACAGATATCCCAGAATACTGGCAGCACGCCTAATCTTTCAAAGTCAAggtttccagcacagaaacctgaACTACTGctaatgctc---------cctaacgaagctctctgagagcagagagagagattcgttctaaaagctaaaaagcagctaA----TGCCcacattctccac-caaaatctgtcatggagttaactagatcaacctatgcctgtgacaggggggcagtaggcccctgtcccccctctcctccccggccccacaaaatgggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagaaaaaaacagcgACAACAgtctatggaggaaaacttattttactaactatgatattggaatgcaagataacacaacataatacaatctaattgaaattgagaataataaatcaaataagataggagaga------------------------------------------gagagttcctgagac--caaGTCAAACCTG-Taaagcttggaacggctaggaaagcaccctacagcacccactgccaggcagtaagagac----------caccccacccagaagggccagatcccatgacttccgtaatgtat------------agggacaggtgc-ctggaattggagcattaacactttaactcccagtacactacatgatgttatgatgcggaatactgaaaaccaaaaaagatAAAACCGTGACATAAATCATCttgatgaatatttttttaa i melGal5.chr1_NW_011093093v1_random N 0 N 0 a score=-1667.000000 s galGal6.chrUn_NW_020110047v1 4834 237 + 11985 tctgatggatctggcagcaccacacaccctcgctgactgctattccgttcagcagtgaattggctctgcagggctgccaatggcccctgccaggatttctgccttccatcagcagtgtgccaatgacagcctctccttctgggctgtcagcagcgctgctcccaacacagcgcacactgtgcggttctgagcccaaggcattcctggtgggga--agggcacacagtgccccttatcag s melGal5.chrZ 61104468 226 - 68461266 CCCTTCAGGACTG--AATCCCAAAGGACTCTCCTTACCAGGGTCCTGAATAGTtcaaagtctgccctccagaagt-ccaagg-----tagcagttttgctggcCCCTCTCCTGCATTCACCAAGAATTGCAAACTCTACCATTTTGTGGTCACTG-----TCCAAGACAGCTCCCGatctccacatctcccaccagtccttctcttTTTGTGAACAGGTCTAGTAGGGCACCTCCCCAG i melGal5.chrZ N 0 N 0 a score=251.000000 s galGal6.chrUn_NW_020110047v1 8192 10 + 11985 ctgcagcca--t s pelCri1.KK480821 11276 12 + 15983 CTGTGGCCACTT i pelCri1.KK480821 N 0 C 0 a score=-2232.000000 s galGal6.chrUn_NW_020110047v1 8202 63 + 11985 cagcccagcacagagtaccCCGCCCCGtggtcagaaaaaac---agaatt-cctgccgtggcaccga s pelCri1.KK480821 11288 46 + 15983 CAACCCC------AGCAACATGCACTGTGGCCACTCCAAAC---------------CTTGCTATAGG i pelCri1.KK480821 C 0 C 0 s mm10.chr7 30854784 60 + 145441459 CAGCCT-------GTCACAGTGCACTCTAGTCCGTCTGAGCTAGGGAATGACCTGCAGACACGCTGG i mm10.chr7 N 0 I 2 a score=-4223.000000 s galGal6.chrUn_NW_020110047v1 8265 63 + 11985 cct--ctcagccacgcatttatcagatg-agttctcccaaccttctcagcatccctcgCTGGCACC s pelCri1.KK480821 11334 64 + 15983 Ctc--tgcagctactcaaacctCAGCGACAGGCACCACAACTACTCCAACCCctgtgacaggcact i pelCri1.KK480821 C 0 C 0 s hg38.chr19 23166834 45 - 58617616 CCT--TCCTGCTCCGC---------------CTCTCCCAGGCTTCCCAGCTCCTGT----GTAACC i hg38.chr19 N 0 C 0 s mm10.chr7 30854846 46 + 145441459 CCTACTCCTGC-CTGC---------------CCCTGGAGAGCTCTCCGCCAGCCAT----AGCACT i mm10.chr7 I 2 C 0 a score=100.000000 s galGal6.chrUn_NW_020110047v1 8328 1 + 11985 G s pelCri1.KK480821 11398 1 + 15983 g i pelCri1.KK480821 C 0 C 0 s hg38.chr19 23166879 1 - 58617616 C i hg38.chr19 C 0 C 0 s mm10.chr7 30854892 1 + 145441459 G i mm10.chr7 C 0 C 0 s angJap1.KI319851 19806 1 + 26375 g i angJap1.KI319851 N 0 I 4 a score=-5220.000000 s galGal6.chrUn_NW_020110047v1 8329 21 + 11985 AGGGAacagaggagaactcca s pelCri1.KK480821 11399 6 + 15983 tgg---------------cta i pelCri1.KK480821 C 0 C 0 s hg38.chr19 23166880 6 - 58617616 AGG---------------CGA i hg38.chr19 C 0 I 3 s mm10.chr7 30854893 6 + 145441459 AGC---------------CAA i mm10.chr7 C 0 I 3 s oreNil3.chrLG11 11609777 21 + 36466354 AGACAACAGTAAAGGCAGCCG i oreNil3.chrLG11 N 0 C 0 s mayZeb1.JH720519 1488533 21 - 6722756 AGACAACAGTAAAGGCAGCCG i mayZeb1.JH720519 N 0 C 0 s angJap1.KI319851 19811 21 + 26375 aggggaccAGAGCGCCCCCCA i angJap1.KI319851 I 4 C 0 a score=-3644.000000 s galGal6.chrUn_NW_020110047v1 8350 10 + 11985 cctgtactcc- s phoRub1.KK414167 21842 10 - 23246 CCTGCACCCC- i phoRub1.KK414167 N 0 C 0 s pelCri1.KK480821 11405 10 + 15983 ctcaaacccc- i pelCri1.KK480821 C 0 C 0 s hg38.chr19 23166889 9 - 58617616 -CTGAAGGTC- i hg38.chr19 I 3 I 12 s mm10.chr7 30854902 9 + 145441459 -TTCCACCCC- i mm10.chr7 I 3 T 35795 s oreNil3.chrLG11 11609798 11 + 36466354 CTTACAGGTCC i oreNil3.chrLG11 C 0 C 0 s mayZeb1.JH720519 1488554 11 - 6722756 CTTACAGGTCC i mayZeb1.JH720519 C 0 C 0 s angJap1.KI319851 19832 11 + 26375 TTTTCCGGCGC i angJap1.KI319851 C 0 C 0 a score=-55231.000000 s galGal6.chrUn_NW_020110047v1 8360 73 + 11985 cactctgcccactg--accaccccag--tgccctgaacaccctttgcatggccctcaggctt----------------ctctcagtgactcc----C s phoRub1.KK414167 21852 78 - 23246 CACTATGGGCACTGCAGCTGTTTCAG--TCCCTGCTGTGGGCATTGCAACTGCCCCAGTCC-----------------CTGCCATGGGCACCACGGC i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11415 76 + 15983 tgtgacaggcactgcagctactccaa--ccacCGCAATATGCAATGCA---GACTCAAGCCT----------------cagtgacaggcactgcagc i pelCri1.KK480821 C 0 C 0 s hg38.chr19 23166910 86 - 58617616 -------TACTCTGTAGTGAAGTCCG--AACTTGGCATCCCTTCTCCTTGACCCACACCCCT-GTCCT-CATTTGTCCCCTCTGCTGTGTCTTTGCC i hg38.chr19 I 12 C 0 s mm10.chr7 30819116 91 + 145441459 --CTCTCTACTCGGTGACAAATTCAG--AACTCTGTACCCCTTCTGCTTGACTTCCACCCCT-GTCCA-TCTTGGTCCCCTCCACTGTCTCTTTGGC i mm10.chr7 T 35795 C 0 s oreNil3.chrLG11 11609809 73 + 36466354 ----------CTTTCTGTCAGCTCAGATAGCATTGATCTCCTCTTGCGTGTGTTCCTTATCTTGTGCAGTCTTGGTAATTCCC-------------- i oreNil3.chrLG11 C 0 I 10 s mayZeb1.JH720519 1488565 73 - 6722756 ----------CTTTCTGTCAGCTCAGATAGCATTGATCTCCTCTTGTGTGTGTTCCTTATCTTGTGCAGTCTTGGTAATTCCC-------------- i mayZeb1.JH720519 C 0 I 10 s angJap1.KI319851 19843 46 + 26375 ----------CGCGCAGCGGCCTCAG--------GACGTCTCGTTG-----------------GAGCA--CTGGGTGCTCTCC-------------- i angJap1.KI319851 C 0 I 19 a score=-13843.000000 s galGal6.chrUn_NW_020110047v1 8433 17 + 11985 TCTGCCAACACCAACCA s phoRub1.KK414167 21930 17 - 23246 TGTTCAAGCCCCAACTA i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11491 17 + 15983 tactcaaactcCAGCAA i pelCri1.KK480821 C 0 C 0 s hg38.chr19 23166996 15 - 58617616 TCTGC--GTCCCAACAG i hg38.chr19 C 0 I 3 s mm10.chr7 30819207 15 + 145441459 TCCCC--TGCCCAGCAT i mm10.chr7 C 0 I 3 s oreNil3.chrLG11 11609892 16 + 36466354 CCTGGAGCAGGCGACA- i oreNil3.chrLG11 I 10 C 0 s mayZeb1.JH720519 1488648 16 - 6722756 CCTGGAGCAGGTGACA- i mayZeb1.JH720519 I 10 C 0 s angJap1.KI319851 19908 16 + 26375 CGTGGGGGTAGCAGCG- i angJap1.KI319851 I 19 C 0 s danRer11.chr16 50863792 15 + 55266484 TCTGTGGGCACCAAC-- i danRer11.chr16 N 0 C 0 a score=-69370.000000 s galGal6.chrUn_NW_020110047v1 8450 48 + 11985 ------------CAAAAACCACA--CATTGTAACACAAACTGC----CCTCACCACCCCACT--GACC--- s phoRub1.KK414167 21947 53 - 23246 ------------TGAGCACCGTGGCTGCTGTGACAGGCACTGCAG-ATCCACCCGTGCCGTT--ATCA--- i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11508 39 + 15983 ------------CAGGCACCGCA---------------GCTGGAGAACCAACCTGTGCTGGT--CTCA--- i pelCri1.KK480821 C 0 C 0 s anoCar2.chrUn_GL343281 1363682 36 - 1799426 ------------CAAGGCCTGCA---------------GCTTG-----CAACCCATCCCAGCAAAACA--- i anoCar2.chrUn_GL343281 N 0 C 0 s hg38.chr19 23167014 37 - 58617616 --------------GGAGCCCTG---------------ATTCCGCAGCACCTGCAGCCCTCT--CCCA--- i hg38.chr19 I 3 C 0 s mm10.chr7 30819225 37 + 145441459 --------------GGAGGCAGG---------------ATTGCGGATCAGTAGCAAACCTTT--CCCA--- i mm10.chr7 I 3 C 0 s oreNil3.chrLG11 11609908 52 + 36466354 AGACATGCACCTCTGGA--GACG---------------GCTTTTAACCCCTTCCATCACACT--ACCCACA i oreNil3.chrLG11 C 0 C 0 s mayZeb1.JH720519 1488664 52 - 6722756 AGACATGCACCTCTGGA--GACG---------------GCTTTTAACCCCTTCCATCACACT--ACTCACA i mayZeb1.JH720519 C 0 C 0 s angJap1.KI319851 19924 54 + 26375 CGCCTTGTCCCCCGCGCAGGACG---------------GGCGGAGCTGCCGCGCCACGCCCC--GCAGGAC i angJap1.KI319851 C 0 C 0 s danRer11.chr16 50863807 35 + 55266484 -------------------AACG---------------ACCCCAAATCCCCCTAATCATCCC--GCTGAAT i danRer11.chr16 C 0 C 0 a score=-376.000000 s galGal6.chrUn_NW_020110047v1 8498 3 + 11985 GCC s phoRub1.KK414167 22000 3 - 23246 GTC i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11547 3 + 15983 GTC i pelCri1.KK480821 C 0 C 0 s anoCar2.chrUn_GL343281 1363718 3 - 1799426 ATC i anoCar2.chrUn_GL343281 C 0 I 7 s hg38.chr19 23167051 3 - 58617616 AAT i hg38.chr19 C 0 C 0 s mm10.chr7 30819262 3 + 145441459 AAA i mm10.chr7 C 0 C 0 s oreNil3.chrLG11 11609960 3 + 36466354 GTC i oreNil3.chrLG11 C 0 C 0 s mayZeb1.JH720519 1488716 3 - 6722756 TTC i mayZeb1.JH720519 C 0 C 0 s angJap1.KI319851 19978 3 + 26375 GCT i angJap1.KI319851 C 0 C 0 s danRer11.chr16 50863842 3 + 55266484 GTG i danRer11.chr16 C 0 C 0 s petMar3.PIZI01000025v1 13078834 3 + 13919858 GTC i petMar3.PIZI01000025v1 N 0 C 0 a score=4637.000000 s galGal6.chrUn_NW_020110047v1 8501 4 + 11985 CTTC- s phoRub1.KK414167 22003 4 - 23246 GCCC- i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11550 4 + 15983 GCCC- i pelCri1.KK480821 C 0 C 0 s anoCar2.chrUn_GL343281 1363728 4 - 1799426 GTTC- i anoCar2.chrUn_GL343281 I 7 I 3 s hg38.chr19 23167054 4 - 58617616 GCCC- i hg38.chr19 C 0 I 3 s mm10.chr7 30819265 4 + 145441459 GCTC- i mm10.chr7 C 0 I 3 s nanPar1.KN906003v1 1598407 4 - 2067329 GTTT- i nanPar1.KN906003v1 N 0 I 3 s oreNil3.chrLG11 11609963 4 + 36466354 CCTC- i oreNil3.chrLG11 C 0 I 1 s mayZeb1.JH720519 1488719 4 - 6722756 ACTC- i mayZeb1.JH720519 C 0 I 1 s gasAcu1.chrX 2121828 4 + 15657440 CTTC- i gasAcu1.chrX N 0 I 1 s angJap1.KI319851 19981 4 + 26375 CCTC- i angJap1.KI319851 C 0 I 1 s danRer11.chr16 50863845 4 + 55266484 CTTC- i danRer11.chr16 C 0 I 1 s petMar3.PIZI01000025v1 13078837 4 + 13919858 -CTCC i petMar3.PIZI01000025v1 C 0 C 0 a score=450.000000 s galGal6.chrUn_NW_020110047v1 8505 1 + 11985 G s phoRub1.KK414167 22007 1 - 23246 C i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11554 1 + 15983 C i pelCri1.KK480821 C 0 C 0 s pytBiv1.KE958374 31791 1 - 82448 G i pytBiv1.KE958374 N 0 C 0 s anoCar2.chrUn_GL343281 1363735 1 - 1799426 G i anoCar2.chrUn_GL343281 I 3 C 0 s hg38.chr19 23167061 1 - 58617616 G i hg38.chr19 I 3 C 0 s mm10.chr7 30819272 1 + 145441459 G i mm10.chr7 I 3 C 0 s nanPar1.KN906003v1 1598414 1 - 2067329 G i nanPar1.KN906003v1 I 3 C 0 s petMar3.PIZI01000025v1 13078841 1 + 13919858 G i petMar3.PIZI01000025v1 C 0 C 0 e gasAcu1.chrX 2121832 1 + 15657440 I e danRer11.chr16 50863849 1 + 55266484 I e mayZeb1.JH720519 1488723 1 - 6722756 I e oreNil3.chrLG11 11609967 1 + 36466354 I e angJap1.KI319851 19985 1 + 26375 I a score=-16410.000000 s galGal6.chrUn_NW_020110047v1 8506 10 + 11985 C----------acagcactg------ s phoRub1.KK414167 22008 9 - 23246 T----------ata-caaaa------ i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11555 9 + 15983 T----------aca-cacaa------ i pelCri1.KK480821 C 0 C 0 s pytBiv1.KE958374 31792 10 - 82448 c----------acagcagaa------ i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104486 10 - 511692 C----------ATGGCAGAG------ i thaSir1.NW_013658552v1 N 0 C 0 s anoCar2.chrUn_GL343281 1363736 10 - 1799426 G----------ATGGCAGTG------ i anoCar2.chrUn_GL343281 C 0 C 0 s hg38.chr19 23167062 10 - 58617616 C----------ACCACTGAA------ i hg38.chr19 C 0 C 0 s mm10.chr7 30819273 10 + 145441459 C----------ACCACGGAG------ i mm10.chr7 C 0 C 0 s nanPar1.KN906003v1 1598415 10 - 2067329 G----------ACTGCTGTA------ i nanPar1.KN906003v1 C 0 C 0 s oreNil3.chrLG11 11609968 10 + 36466354 C----------ACAGCAGAG------ i oreNil3.chrLG11 I 1 C 0 s mayZeb1.JH720519 1488724 10 - 6722756 c----------acagcagag------ i mayZeb1.JH720519 I 1 C 0 s gasAcu1.chrX 2121833 10 + 15657440 G----------ACAGCCGCC------ i gasAcu1.chrX I 1 C 0 s angJap1.KI319851 19986 20 + 26375 GCATGGCCCGCACCGCCGAG------ i angJap1.KI319851 I 1 C 0 s danRer11.chr16 50863850 10 + 55266484 A----------ACAGCGGCG------ i danRer11.chr16 I 1 C 0 s petMar3.PIZI01000025v1 13078842 10 + 13919858 ----------------GGAAGTTCtc i petMar3.PIZI01000025v1 C 0 C 0 a score=14655.000000 s galGal6.chrUn_NW_020110047v1 8516 2 + 11985 -ga s phoRub1.KK414167 22017 2 - 23246 -ga i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11564 2 + 15983 -ga i pelCri1.KK480821 C 0 C 0 s pytBiv1.KE958374 31802 2 - 82448 -ga i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104496 2 - 511692 -GA i thaSir1.NW_013658552v1 C 0 C 0 s anoCar2.chrUn_GL343281 1363746 2 - 1799426 -GA i anoCar2.chrUn_GL343281 C 0 C 0 s hg38.chr19 23167072 2 - 58617616 -GA i hg38.chr19 C 0 C 0 s mm10.chr7 30819283 2 + 145441459 -GA i mm10.chr7 C 0 C 0 s nanPar1.KN906003v1 1598425 2 - 2067329 -GA i nanPar1.KN906003v1 C 0 C 0 s oreNil3.chrLG11 11609978 2 + 36466354 -GA i oreNil3.chrLG11 C 0 C 0 s mayZeb1.JH720519 1488734 2 - 6722756 -ga i mayZeb1.JH720519 C 0 C 0 s oryLat2.chr11 10680816 2 - 29412213 -GA i oryLat2.chr11 N 0 C 0 s gasAcu1.chrX 2121843 2 + 15657440 -GA i gasAcu1.chrX C 0 C 0 s angJap1.KI319851 20006 2 + 26375 -GA i angJap1.KI319851 C 0 C 0 s danRer11.chr16 50863860 2 + 55266484 -GA i danRer11.chr16 C 0 C 0 s petMar3.PIZI01000025v1 13078852 2 + 13919858 ag- i petMar3.PIZI01000025v1 C 0 I 4 a score=104783.000000 s galGal6.chrUn_NW_020110047v1 8518 60 + 11985 ggagaaatagaag----------------atga-aagGGTCGAGCGCGGTGCTGAGggtgtgaggagcagagcataA------ s phoRub1.KK414167 22019 73 - 23246 agagaagcacaaagaaatcaGTTAGCCTCATGA-AAGATGAGAATGAA---CCAGGGACATCACAGGAACAGGGAGA------ i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11566 56 + 15983 agaaatacacaag---------------------aagaTCGGCTCGTTTAGTAAGGGCCATcacaagaagaggagga------ i pelCri1.KK480821 C 0 I 102 s pytBiv1.KE958374 31804 61 - 82448 agaaaaataaaag----------------ataatgggGTCCAGGCTGGCATTGAAGGTGCTGGGAAGTAAGGCTTTG------ i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104498 61 - 511692 GAGGAAGTAGAAG----------------ATGAGGGGATCCAGAAAAGCGTTGCACGCCGTTGGAAGCAGAGCCACA------ i thaSir1.NW_013658552v1 C 0 C 0 s anoCar2.chrUn_GL343281 1363748 61 - 1799426 GGAGAAGTAGAAG----------------ATTGCTGGGTCTAAGGACGCATTGAGGGTGCTGAGGAGCAAAGCATAG------ i anoCar2.chrUn_GL343281 C 0 C 0 s hg38.chr19 23167074 61 - 58617616 AGAGAAATAGAAG----------------AGCAGGGGGTCCAGACTGGCGTTGAGTGAACTGAACACCACGGCTATT------ i hg38.chr19 C 0 C 0 s mm10.chr7 30819285 61 + 145441459 GGAGAAGTAGAAC----------------AATAATGGATCCAGGCTGGCATTGAGGGAACTGAACACCACAGCCTCC------ i mm10.chr7 C 0 C 0 s nanPar1.KN906003v1 1598427 61 - 2067329 GGTGAAGTAGAAC----------------ACAACTGGGTCCAAGGTGGCATTGAATGTACTCAGGAGCAAGGCATCC------ i nanPar1.KN906003v1 C 0 C 0 s oreNil3.chrLG11 11609980 61 + 36466354 AGAAAAGTAGAAA----------------ATAAGAGGGTCTAGGCAGGCATTGAAGGTGCTGCACAGCAGGGCCTTG------ i oreNil3.chrLG11 C 0 C 0 s mayZeb1.JH720519 1488736 61 - 6722756 agaaaagtagaaa----------------ataagAGGGTCTAGACAGGCATTGAAGGTGCTGCACAGCAGGGCCTTG------ i mayZeb1.JH720519 C 0 C 0 s oryLat2.chr11 10680818 61 - 29412213 GGACAGGTAGAAG----------------ATGAGGGGGTCCAGGCAGGCGTTGAGGGTGCTGGAGAGCAGGGCGATG------ i oryLat2.chr11 C 0 C 0 s gasAcu1.chrX 2121845 61 + 15657440 GGAGAAGTAGAAG----------------ATGATGGGATCCAGGCAGGCGTTTAAGGTGCTGCAGAGCAACGCCATG------ i gasAcu1.chrX C 0 C 0 s angJap1.KI319851 20008 61 + 26375 GGAGAAGTAGAAG----------------ATGAGCGGGTCCAGGCAGGCGTTGAAGGTGCTGAACAGGAGGGCGTAG------ i angJap1.KI319851 C 0 C 0 s danRer11.chr16 50863862 61 + 55266484 GGTGAAGTAAAAA----------------ATAAACGGATCCAAACAAGCATTAAACGTGCTCAAGAGAAGAGTTTTA------ i danRer11.chr16 C 0 C 0 s petMar3.PIZI01000025v1 13078858 65 + 13919858 aaacacattgaGG----------------A--AAGGGGTTCAGGGCACTGCTGAGGCTTGTGAGGGTGAAGCAGAGCCTATAC i petMar3.PIZI01000025v1 I 4 C 0 s letCam1.KE993742 2463744 64 + 2500603 GAAGATGTTGAGG-------------------ATGGGGTCGAGCGCGCTGTTGAGGCAGGTGAGCGCGAAGGCGACGCGGTAC i letCam1.KE993742 N 0 C 0 a score=143764.000000 s galGal6.chrUn_NW_020110047v1 8578 98 + 11985 --------------GGCCTCCAgtcaggg----------c-tgcgctgc-t------gcacaaagcccaccacatgcGAGATGTTGTAGGGTCCAAAGCAGACCCCAGAGTTGGCCATGGTGGCCACAGA---- s phoRub1.KK414167 22092 86 - 23246 --------------GGCAGAC--TCAGAG----------A-TG----AT-C------ACCCAACCCCTATCCCTGACTGAGCTGTGAGATATCCAAAAAAGATTTCAGCCATAATCAAGGTGG------G---- i phoRub1.KK414167 C 0 C 0 s pytBiv1.KE958374 31865 98 - 82448 --------------CTCCGCCAGTCTGGA----------C-TCCTCCAC-T------CAATAAAACCAACCACATGGGAGATGTTGTAGGGTGTAAAACAGATGATAAAGACAGCTAAAGTGGCTGCTAC---- i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104559 98 - 511692 --------------GTGCGCCA--CCAAA----------CGTCCTCCCCAT------AGACGAAGCCTACGATGTGGGATATGTTATAAGGGCCGAAACAGAGGACAAAAACAGACAAAGTGGCCACGGC---- i thaSir1.NW_013658552v1 C 0 C 0 s anoCar2.chrUn_GL343281 1363809 98 - 1799426 --------------ACTCTCCACTCAGGG----------C-TCTCGTTC-T------TAATGAAACCCACAATGTGGGAGATGTTGTAAGGAGCGAAGCAGATGGCAAAGTTGAGCAACGTCACCACGGC---- i anoCar2.chrUn_GL343281 C 0 C 0 s hg38.chr19 23167135 98 - 58617616 --------------GACCGCCACCAGGGG----------C-TTTTTCTC-T------GGTGATACCCCACCAGGTGGGACACGTTGTAAGGTCCGAAGCACACCAGGAAATTGAGCAGCGTCACCACAGC---- i hg38.chr19 C 0 C 0 s mm10.chr7 30819346 98 + 145441459 --------------ACCCGCCACGAGGGG----------C-TCTGCCTC-A------GGTAGAACCCCACCAGGTGGGACATGTTGTAGGGTCCAAAGCACACCAGGAAATTAAGAAGCGTCACAACAGC---- i mm10.chr7 C 0 C 0 s nanPar1.KN906003v1 1598488 98 - 2067329 --------------ACTCTCCATTTTGGG----------C-TCTTGCCG-T------TCACAAAGCCAACGATGTGGGAGATGTTGTAGGGAGCGAAGCAGATGCAAAAGTTGGCCAGAGTGGCGATGGC---- i nanPar1.KN906003v1 C 0 C 0 s oreNil3.chrLG11 11610041 98 + 36466354 --------------TCTCTCCATGCCGGA----------C-TTTTCCAC-T------TTATAAAACCAATGATGTGTGAGACGTTGTAGGGTCCAAAACATAGAGCAAACACCACCAGGGTTCCCAAAGC---- i oreNil3.chrLG11 C 0 C 0 s mayZeb1.JH720519 1488797 98 - 6722756 --------------TCTCTCCACGCCGGA----------C-TTTTCTTG-T------TTATAAAACCAATGATGTGTGAGACGTTGTAGGGTCCAAAACATAGAGCAAACACCACCAGGGTTCCCAAAGC---- i mayZeb1.JH720519 C 0 C 0 s oryLat2.chr11 10680879 98 - 29412213 --------------CTCCTCCAATCCTCA----------T-TCTCCTGG-C------GGACGAAGCCCACCACATGGGAAGCGTTGTACGGCCCGAAGCAGACTGTGAAGACGATGAGTGTGCCGAGCGC---- i oryLat2.chr11 C 0 C 0 s gasAcu1.chrX 2121906 98 + 15657440 --------------TTCCTCCACTCCTCG----------C-TCTCCTGC-C------GGACGTACCCCACCACGTGGGAGGCGTTGTAGGGCCCAAAGCACACGGTGAACACTGTCAGGGTGCCGAACGC---- i gasAcu1.chrX C 0 C 0 s angJap1.KI319851 20069 98 + 26375 --------------ACGCGCCAGGAGGGG----------C-TCCGCCAG-T------GGGCGTAGCCCACCACGTGCGAGACGTTGTAGGGCCCGAAGCAGAGCATGAAGACCAGCAGCGTGCCCAGCGC---- i angJap1.KI319851 C 0 C 0 s danRer11.chr16 50863923 98 + 55266484 --------------TCCCTCCAATCTGGG----------C-TTTCTTTG-G------TTATGAAGCCAACCACGTGTGAGACATTATAGGGTCCGAAGCAGAGCGCAAAGACCAACAGCGTTCCCAAAGC---- i danRer11.chr16 C 0 C 0 s petMar3.PIZI01000025v1 13078923 117 + 13919858 GCGCTTCGGAGTGTCCCATCCAGGTCGCA----------T-TCCCCAAA-TT-----TGATGGAACGCACCAGAAGGAGCAAGTTGTATGGCAGAAAGCTGACCACAAAGATGGCCAGGATGGCCACGACGAGG i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2463808 132 + 2500603 GCCTTGCGCACCTTGATCTCAAAGTCGCAGCTGCAGCCCT-CCGTCACG-TCACTGGCGATGGcccgcaccagcagcagcacgtggtaCGGCAGGAAGGAGACgacgaagatggtgatgatgacgaccacgAGG i letCam1.KE993742 C 0 C 0 e pelCri1.KK480821 11622 102 + 15983 I a score=9296.000000 s galGal6.chrUn_NW_020110047v1 8676 15 + 11985 CAGCCCCTCAGTGCG--------- s phoRub1.KK414167 22178 15 - 23246 CAGCTTGTCACCTGG--------- i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11724 10 + 15983 -----catcacctgg--------- i pelCri1.KK480821 I 102 I 5 s pytBiv1.KE958374 31963 15 - 82448 CAGCCCCACAGCTCG--------- i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104657 15 - 511692 CACCCGTACAGCACG--------- i thaSir1.NW_013658552v1 C 0 C 0 s anoCar2.chrUn_GL343281 1363907 15 - 1799426 CAGGCCCACAGCCCG--------- i anoCar2.chrUn_GL343281 C 0 C 0 s hg38.chr19 23167233 15 - 58617616 CAGCCCCACGGCTCG--------- i hg38.chr19 C 0 C 0 s mm10.chr7 30819444 15 + 145441459 CAGGCCCACTGCCCG--------- i mm10.chr7 C 0 C 0 s nanPar1.KN906003v1 1598586 15 - 2067329 CAAGCCAATGGCTCT--------- i nanPar1.KN906003v1 C 0 C 0 s oreNil3.chrLG11 11610139 15 + 36466354 CATGCCCATGGCTCG--------- i oreNil3.chrLG11 C 0 I 2 s mayZeb1.JH720519 1488895 15 - 6722756 CATGCCCATGGCTCG--------- i mayZeb1.JH720519 C 0 I 2 s oryLat2.chr11 10680977 15 - 29412213 CAGGCCAATGCAACG--------- i oryLat2.chr11 C 0 I 2 s gasAcu1.chrX 2122004 15 + 15657440 CAGGCCGATGGCGCG--------- i gasAcu1.chrX C 0 I 2 s angJap1.KI319851 20167 15 + 26375 CATGCCGATGGCCCG--------- i angJap1.KI319851 C 0 I 2 s danRer11.chr16 50864021 15 + 55266484 CAATCCAATCGCTCT--------- i danRer11.chr16 C 0 I 2 s petMar3.PIZI01000025v1 13079040 20 + 13919858 ----CTGATGATCTTGACTTTCTG i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2463940 20 + 2500603 ----CAGATGATCTTGCGCTTGCG i letCam1.KE993742 C 0 C 0 a score=-52931.000000 s galGal6.chrUn_NW_020110047v1 8691 3 + 11985 --GTA s phoRub1.KK414167 22193 3 - 23246 --TTG i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11739 1 + 15983 ----a i pelCri1.KK480821 I 5 I 2 s phaLep1.KK439289 8196 3 + 52419 --cca i phaLep1.KK439289 N 0 I 33 s pytBiv1.KE958374 31978 3 - 82448 --TTG i pytBiv1.KE958374 C 0 I 1 s thaSir1.NW_013658552v1 104672 3 - 511692 --GCG i thaSir1.NW_013658552v1 C 0 I 1 s anoCar2.chrUn_GL343281 1363922 3 - 1799426 --TTG i anoCar2.chrUn_GL343281 C 0 I 1 s hg38.chr19 23167248 3 - 58617616 --GCG i hg38.chr19 C 0 I 1 s mm10.chr7 30819459 3 + 145441459 --GCG i mm10.chr7 C 0 I 1 s nanPar1.KN906003v1 1598601 3 - 2067329 --CTG i nanPar1.KN906003v1 C 0 I 4 s oreNil3.chrLG11 11610156 2 + 36466354 --TG- i oreNil3.chrLG11 I 2 I 3 s mayZeb1.JH720519 1488912 2 - 6722756 --TG- i mayZeb1.JH720519 I 2 I 3 s oryLat2.chr11 10680994 2 - 29412213 --GC- i oryLat2.chr11 I 2 I 3 s gasAcu1.chrX 2122021 2 + 15657440 --TC- i gasAcu1.chrX I 2 I 3 s angJap1.KI319851 20184 2 + 26375 --GC- i angJap1.KI319851 I 2 I 3 s danRer11.chr16 50864038 2 + 55266484 --AT- i danRer11.chr16 I 2 I 3 s petMar3.PIZI01000025v1 13079060 3 + 13919858 GCG-- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2463960 3 + 2500603 CCG-- i letCam1.KE993742 C 0 C 0 a score=-79344.000000 s galGal6.chrUn_NW_020110047v1 8694 11 + 11985 ---CTTCTTTGT------AG s phoRub1.KK414167 22196 17 - 23246 ---CTCCAATGCTGGGACAA i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11742 12 + 15983 --------atgctgggataa i pelCri1.KK480821 I 2 C 0 s pytBiv1.KE958374 31982 11 - 82448 ---TTTTTGCTC------CT i pytBiv1.KE958374 I 1 C 0 s thaSir1.NW_013658552v1 104676 11 - 511692 ---TTCTTCCGC------AG i thaSir1.NW_013658552v1 I 1 C 0 s anoCar2.chrUn_GL343281 1363926 11 - 1799426 ---TTCCTTCGG------GC i anoCar2.chrUn_GL343281 I 1 C 0 s hg38.chr19 23167252 11 - 58617616 ---CGCCTCTGG------GC i hg38.chr19 I 1 C 0 s mm10.chr7 30819463 11 + 145441459 ---CGCCTCTGA------GC i mm10.chr7 I 1 C 0 s nanPar1.KN906003v1 1598608 8 - 2067329 ---CTCttttt--------- i nanPar1.KN906003v1 I 4 C 0 s oreNil3.chrLG11 11610161 8 + 36466354 ---CGGCGCCG--------- i oreNil3.chrLG11 I 3 C 0 s mayZeb1.JH720519 1488917 8 - 6722756 ---CGGCGCCG--------- i mayZeb1.JH720519 I 3 C 0 s oryLat2.chr11 10680999 8 - 29412213 ---CGTCGCCG--------- i oryLat2.chr11 I 3 C 0 s gasAcu1.chrX 2122026 8 + 15657440 ---CGCCGCCT--------- i gasAcu1.chrX I 3 C 0 s angJap1.KI319851 20189 8 + 26375 ---TTGGGCAG--------- i angJap1.KI319851 I 3 C 0 s danRer11.chr16 50864043 8 + 55266484 ---CTCCTCCG--------- i danRer11.chr16 I 3 C 0 s petMar3.PIZI01000025v1 13079063 11 + 13919858 CCTCTCCACGA--------- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2463963 11 + 2500603 GCGCTCGACGG--------- i letCam1.KE993742 C 0 C 0 e phaLep1.KK439289 8199 33 + 52419 I a score=-73839.000000 s galGal6.chrUn_NW_020110047v1 8705 19 + 11985 -CAGGAT--GTGGGGTCGAGTG s phoRub1.KK414167 22213 21 - 23246 -CGGGGCCAGTAGCTTGGAATT i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11754 21 + 15983 -cagggccagtagcctggaatt i pelCri1.KK480821 C 0 C 0 s pytBiv1.KE958374 31993 19 - 82448 -GTGGATGTGGGGTGAAGAG-- i pytBiv1.KE958374 C 0 I 5 s thaSir1.NW_013658552v1 104687 16 - 511692 -ATGGAGATGCGATCCA----- i thaSir1.NW_013658552v1 C 0 I 5 s anoCar2.chrUn_GL343281 1363937 19 - 1799426 -TTGTATGTTTGGTAAGGAG-- i anoCar2.chrUn_GL343281 C 0 I 5 s hg38.chr19 23167263 19 - 58617616 -CCCCACAAGGGGCTGGGAG-- i hg38.chr19 C 0 I 5 s mm10.chr7 30819474 19 + 145441459 -CCCAACGTGGGGCTGCGTG-- i mm10.chr7 C 0 I 5 s xenTro9.chr9 17527226 19 + 80437102 -TGGTGTGTGGCGCAGCAAT-- i xenTro9.chr9 N 0 I 2 s nanPar1.KN906003v1 1598616 19 - 2067329 -ttGGATGTTGGGCAGAGAC-- i nanPar1.KN906003v1 C 0 I 2 s oreNil3.chrLG11 11610169 19 + 36466354 -GTCAATGTGTTGCAGCTTT-- i oreNil3.chrLG11 C 0 I 5 s mayZeb1.JH720519 1488925 19 - 6722756 -GTCAATGTGTTGCAGCTTT-- i mayZeb1.JH720519 C 0 I 5 s oryLat2.chr11 10681007 19 - 29412213 -ACTGATGTTGGGGAGGCGG-- i oryLat2.chr11 C 0 I 5 s gasAcu1.chrX 2122034 19 + 15657440 -GCCGATGTTCGGCAGGCGC-- i gasAcu1.chrX C 0 I 5 s angJap1.KI319851 20197 19 + 26375 -GCTGATGTTGGGCAGCCGG-- i angJap1.KI319851 C 0 I 5 s danRer11.chr16 50864051 19 + 55266484 -TCCAATATTTGGCAACCTC-- i danRer11.chr16 C 0 I 5 s petMar3.PIZI01000025v1 13079074 17 + 13919858 CACTGGTGCGTCGCACG----- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2463974 17 + 2500603 AGGCGCAGCGGTGCACC----- i letCam1.KE993742 C 0 C 0 e phaLep1.KK439289 8199 33 + 52419 I a score=-37580.000000 s galGal6.chrUn_NW_020110047v1 8724 56 + 11985 AGGG---GGCACGGATGTGGCCGATGTAGCAGACCATGGTAATGGCAGAGGGTATGAGG s phoRub1.KK414167 22234 55 - 23246 AGAA---GGCAGGGAAGCCAGGCAGTTAGGAT-CCTTGTCTAAGGAAGCAGCCATTGAC i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11775 55 + 15983 agag---ggtagggaagccaagcagctgggat-ccctttctagggaagggggcattaAC i pelCri1.KK480821 C 0 C 0 s phaLep1.KK439289 8232 55 + 52419 AGAG---GGTAGGGAAGCCAAGTAGCTGAGAT-CCCTGtctagggaagggggcattGAA i phaLep1.KK439289 I 33 C 0 s pytBiv1.KE958374 32017 52 - 82448 TATT---CTCATAAAGCCAAAATAGCAGAAGC-AGGTGATCAGGGATGGCACCAGG--- i pytBiv1.KE958374 I 5 C 0 s thaSir1.NW_013658552v1 104708 52 - 511692 GACA---CGGATGCATCCGGCGTAGCAAAAAG-CTGTGATGAGCAAGGGGAGAAAG--- i thaSir1.NW_013658552v1 I 5 C 0 s anoCar2.chrUn_GL343281 1363961 52 - 1799426 GATG---CGGATTAAGTTGACGTAGCAGAAGA-GGGAGACAAAGAAAGGGACCAAG--- i anoCar2.chrUn_GL343281 I 5 C 0 s hg38.chr19 23167287 52 - 58617616 GATC---CACACAAAACGCCAGTAGCAGAAGA-TGGTGACTGCCATGGGGATGAAG--- i hg38.chr19 I 5 C 0 s mm10.chr7 30819498 52 + 145441459 GATC---CACACGAAGCGCCAATAACAGAAGA-TGGTGACTGCCATGGGAACGAAA--- i mm10.chr7 I 5 C 0 s xenTro9.chr9 17527247 48 + 80437102 AAGG---CATATGGGGTTTAGATGTCGGTTG--TGATGTCTGACAATAGAAGC------ i xenTro9.chr9 I 2 I 5 s nanPar1.KN906003v1 1598637 34 - 2067329 CAGTATCCTTATGAAGTTGATGTAGCAG-------------------AAAAGC------ i nanPar1.KN906003v1 I 2 I 9 s oreNil3.chrLG11 11610193 52 + 36466354 AATT---CTGATGAAGTTGATGTAGCAAAAAC-TAGAAATCAGGAAAGGGATGCAG--- i oreNil3.chrLG11 I 5 C 0 s mayZeb1.JH720519 1488949 52 - 6722756 AATT---CTGATGAAGTTGATGTAGCAAAAAC-TAGAAATCAGGAAAGGGATGCAG--- i mayZeb1.JH720519 I 5 C 0 s oryLat2.chr11 10681031 52 - 29412213 GATG---AGGATGAAGTTGATGTAGCAGAAGC-AGCTGATGAGGAAAGGGATGCAG--- i oryLat2.chr11 I 5 C 0 s gasAcu1.chrX 2122058 52 + 15657440 GATG---AGGATGAAGTTGACGTAGCAGAAGC-AGCAGATGAGGAAGGGCACGCAG--- i gasAcu1.chrX I 5 C 0 s angJap1.KI319851 20221 52 + 26375 GATG---CGGATGAAGTTGACGTAGCAGAAGG-AGCAGACTAGGAAGGGGATGCAG--- i angJap1.KI319851 I 5 C 0 s danRer11.chr16 50864075 52 + 55266484 AATC---CGAATAAAGTTAATATAGCAAAAGC-TGCATATTAATAAAGGAACGCAA--- i danRer11.chr16 I 5 C 0 s petMar3.PIZI01000025v1 13079091 51 + 13919858 -ATG---TGGATGATGCAGCTGTACGACGCCA-CGATGAGGCACAGTGGAACGAGG--- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2463991 51 + 2500603 -GTG---CGGATGATGTAGCCGTAGCAGCCGA-CGGTGATGACGAAGGGCAGCAGG--- i letCam1.KE993742 C 0 C 0 a score=-202043.000000 s galGal6.chrUn_NW_020110047v1 8780 75 + 11985 AAGGCGATGTGGCAGAGTGAA-----------AGG----CGCAGCAGTAGGACGAAG-TGCTGCTGGGTTT--TGGATAAGTCGTC-------------------------GT---AGCAG s bucRhi1.KL524332 5066 74 + 10443 AAGCCAAACTGCTGGGGTGCCTGTGCCTTTCTAGG----GACAGCACATTAACAAAG---------AGATT--GGAATAGGG-----------------------------GC---ACCAG i bucRhi1.KL524332 N 0 C 0 s phoRub1.KK414167 22289 88 - 23246 AGGGCGAT-TGGAAGAGAGCC-----------AGAAGCCCACAGTCTCTGGAGGAGACTCCTGTCAGGTGTGAGGGACAGGTATTTC------------------TTTAAGGA---AGATA i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11830 87 + 15983 AAAGCtat-tggaaaaggggc-----------acaagccctcagcctctggaggtgactcctgtcaggcatgaaggaaaggtatccc------------------ttcaa-ga---AGATG i pelCri1.KK480821 C 0 C 0 s phaLep1.KK439289 8287 88 + 52419 AAGGTGAt-tggaaaaaagac-----------acaagCCCTCAGTCTCTGGAGGTGACTCCTATCTGGTGTGAAGGAAACATAttcc------------------ttcaagga---agatg i phaLep1.KK439289 C 0 C 0 s pytBiv1.KE958374 32069 66 - 82448 ------------AAGAGAACG-----------ATG----CTGAGCTCCAGGCGGACA----------------GGGAGCAGGGTCTCGAGCTGCGC---------CTCAGTGA---AATTG i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104760 66 - 511692 ------------AACAGGACC-----------ACG----GAGAGCTCCAGGCGCACA----------------GGGGCCAATAAAGCCAGCTGGTC---------TGCGCTGA---AGTTG i thaSir1.NW_013658552v1 C 0 C 0 s anoCar2.chrUn_GL343281 1364013 66 - 1799426 ------------AAGAGAGAA-----------ACG----CAGAGCTCCAGTCGGACA----------------GGGAGAAGAATGTCAAGCTGCCT---------GGAGGAGA---ATTTT i anoCar2.chrUn_GL343281 C 0 C 0 s hg38.chr19 23167339 66 - 58617616 ------------AAGAGCACC-----------AGG----CACAGCTCCAGCCGCACG----------------GGCAGCACCACGTCCAACTGGTT---------ATCGGTGA---AGTTC i hg38.chr19 C 0 N 0 s mm10.chr7 30819550 66 + 145441459 ------------AACAGGACC-----------AGG----CACAGCTCCAGTCGTACG----------------GGCAGTACCACATCCAGCTGCTC---------TTGGGTGA---AGTTC i mm10.chr7 C 0 I 10 s xenTro9.chr9 17527300 60 + 80437102 GTGGGGTTTGGCAATGGGGTC-----------A-------------------GGTGT----------------GGGAGGAAGTTTTGCAATGG---------------TGTGGGTCAGTGA i xenTro9.chr9 I 5 I 9 s nanPar1.KN906003v1 1598680 78 - 2067329 GATGGGATGAAGAAAAGAGTC-----------ACT----CCTAACTCCAAACGAACC----------------GGCAGCAAGATCTTCAGCTGCTC---------CTCTGTGA---AGTTG i nanPar1.KN906003v1 I 9 I 9 s oreNil3.chrLG11 11610245 66 + 36466354 ------------AAAAGCACC-----------ACA----CAAAGCTCCAGGCGCACA----------------GGCAGGAGGACGTTCAGCTGAGA---------CTCGGTGA---AGTTC i oreNil3.chrLG11 C 0 I 9 s mayZeb1.JH720519 1489001 66 - 6722756 ------------AAAAGCACC-----------ACA----CAAAGCTCCAGGCGCACA----------------GGCAGGAGGACGTTCAGCTGAGA---------CTCGGTGA---AGTTC i mayZeb1.JH720519 C 0 I 9 s oryLat2.chr11 10681083 66 - 29412213 ------------AAGAGCATG-----------AGG----AAGAGCTCCAATCGGACG----------------GACATGACGATGCTGAGCTCCTC---------TGGGGTGA---ATTCC i oryLat2.chr11 C 0 I 8 s gasAcu1.chrX 2122110 66 + 15657440 ------------AAGAGAACC-----------AAG----AAGAGCTCCAGGCGCACC----------------CGCAGCACGATGTTCAGCTCCTC---------CGGGCTGA---AATCC i gasAcu1.chrX C 0 N 0 s angJap1.KI319851 20273 66 + 26375 ------------AAGAGCACC-----------AGG----AAGAGCTCCAGGCGCACG----------------GGCAGCAGCACCTCCAGCTGCGC---------TGGCGTGA---ACTCC i angJap1.KI319851 C 0 I 9 s danRer11.chr16 50864127 66 + 55266484 ------------AAGAGGACA-----------ATG----AAGAGCTCCAAACGAACA----------------GGTAAGAGGATTTCCAGTTGAGC---------CTCGGTGA---ATCCT i danRer11.chr16 C 0 I 9 s petMar3.PIZI01000025v1 13079142 66 + 13919858 ---------------AACCCC-----------ACA----AACACTCTGAAGTAGTTG----------------ATGGTGATCACCCACGGCTCTTT---GTACTTTTCGTAGC---AG--- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464042 69 + 2500603 ---------------AAGGCG-----------ACG----AACACACGGAAGTAGGAG----------------AGCTGCGCTACCCAGCGCTCCATCGGGTAACGCTCGtagc---ag--- i letCam1.KE993742 C 0 C 0 a score=-6235.000000 s galGal6.chrUn_NW_020110047v1 8855 1 + 11985 -T s bucRhi1.KL524332 5140 1 + 10443 -T i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22377 1 - 23246 -T i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11917 1 + 15983 -T i pelCri1.KK480821 C 0 C 0 s phaLep1.KK439289 8375 1 + 52419 -t i phaLep1.KK439289 C 0 C 0 s pytBiv1.KE958374 32135 1 - 82448 -T i pytBiv1.KE958374 C 0 C 0 s thaSir1.NW_013658552v1 104826 1 - 511692 -C i thaSir1.NW_013658552v1 C 0 C 0 s anoCar2.chrUn_GL343281 1364079 1 - 1799426 -T i anoCar2.chrUn_GL343281 C 0 C 0 s mm10.chr7 30819626 1 + 145441459 -T i mm10.chr7 I 10 C 0 s xenTro9.chr9 17527369 1 + 80437102 -T i xenTro9.chr9 I 9 I 2 s nanPar1.KN906003v1 1598767 1 - 2067329 -T i nanPar1.KN906003v1 I 9 N 0 s oreNil3.chrLG11 11610320 1 + 36466354 -T i oreNil3.chrLG11 I 9 C 0 s mayZeb1.JH720519 1489076 1 - 6722756 -T i mayZeb1.JH720519 I 9 C 0 s petMar3.PIZI01000025v1 13079208 1 + 13919858 A- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464111 1 + 2500603 a- i letCam1.KE993742 C 0 C 0 e oryLat2.chr11 10681149 8 - 29412213 I e danRer11.chr16 50864193 9 + 55266484 I e angJap1.KI319851 20339 9 + 26375 I a score=-32169.000000 s galGal6.chrUn_NW_020110047v1 8856 3 + 11985 GGT- s bucRhi1.KL524332 5141 3 + 10443 CCT- i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22378 3 - 23246 TAT- i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11918 2 + 15983 TA-- i pelCri1.KK480821 C 0 I 36 s phaLep1.KK439289 8376 2 + 52419 tg-- i phaLep1.KK439289 C 0 I 77 s pytBiv1.KE958374 32136 3 - 82448 CAT- i pytBiv1.KE958374 C 0 N 0 s thaSir1.NW_013658552v1 104827 3 - 511692 GGT- i thaSir1.NW_013658552v1 C 0 I 9 s anoCar2.chrUn_GL343281 1364080 3 - 1799426 CAT- i anoCar2.chrUn_GL343281 C 0 I 9 s mm10.chr7 30819627 1 + 145441459 T--- i mm10.chr7 C 0 C 0 s xenTro9.chr9 17527372 1 + 80437102 T--- i xenTro9.chr9 I 2 C 0 s oreNil3.chrLG11 11610321 2 + 36466354 -GT- i oreNil3.chrLG11 C 0 I 1 s mayZeb1.JH720519 1489077 2 - 6722756 -GT- i mayZeb1.JH720519 C 0 I 1 s angJap1.KI319851 20348 2 + 26375 -GT- i angJap1.KI319851 I 9 I 1 s danRer11.chr16 50864202 2 + 55266484 -AC- i danRer11.chr16 I 9 I 1 s petMar3.PIZI01000025v1 13079209 3 + 13919858 -CTT i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464112 3 + 2500603 -gcg i letCam1.KE993742 C 0 C 0 e oryLat2.chr11 10681149 8 - 29412213 I a score=-18231.000000 s galGal6.chrUn_NW_020110047v1 8859 4 + 11985 AGCC- s bucRhi1.KL524332 5144 4 + 10443 CAGC- i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22381 4 - 23246 ATGC- i phoRub1.KK414167 C 0 C 0 s thaSir1.NW_013658552v1 104839 4 - 511692 AGCT- i thaSir1.NW_013658552v1 I 9 I 4 s anoCar2.chrUn_GL343281 1364092 4 - 1799426 AGAC- i anoCar2.chrUn_GL343281 I 9 N 0 s mm10.chr7 30819628 1 + 145441459 A---- i mm10.chr7 C 0 C 0 s xenTro9.chr9 17527373 4 + 80437102 AGCC- i xenTro9.chr9 C 0 C 0 s oreNil3.chrLG11 11610324 3 + 36466354 -TTC- i oreNil3.chrLG11 I 1 I 1 s mayZeb1.JH720519 1489080 3 - 6722756 -TTC- i mayZeb1.JH720519 I 1 I 1 s angJap1.KI319851 20351 3 + 26375 -CTC- i angJap1.KI319851 I 1 I 1 s danRer11.chr16 50864205 3 + 55266484 -TTT- i danRer11.chr16 I 1 I 1 s petMar3.PIZI01000025v1 13079212 4 + 13919858 -TGTG i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464115 4 + 2500603 -agcg i letCam1.KE993742 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e oryLat2.chr11 10681149 8 - 29412213 I e pelCri1.KK480821 11920 36 + 15983 I a score=-34305.000000 s galGal6.chrUn_NW_020110047v1 8863 12 + 11985 CCGGTGGGGTTG s bucRhi1.KL524332 5148 12 + 10443 CTCTGGAGATGG i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22385 12 - 23246 CACCCAAAGAAG i phoRub1.KK414167 C 0 C 0 s thaSir1.NW_013658552v1 104847 12 - 511692 CCAGTGAAAAGG i thaSir1.NW_013658552v1 I 4 I 3 s mm10.chr7 30819629 4 + 145441459 --TTTG------ i mm10.chr7 C 0 C 0 s xenTro9.chr9 17527377 7 + 80437102 -----GAAGGGG i xenTro9.chr9 C 0 I 5 s oreNil3.chrLG11 11610328 10 + 36466354 --GCTATCTGTG i oreNil3.chrLG11 I 1 I 5 s mayZeb1.JH720519 1489084 10 - 6722756 --GCTATCGCTG i mayZeb1.JH720519 I 1 I 5 s oryLat2.chr11 10681157 8 - 29412213 ----GGTGGGTG i oryLat2.chr11 I 8 I 4 s angJap1.KI319851 20355 10 + 26375 --TCTCCTGCGG i angJap1.KI319851 I 1 I 3 s danRer11.chr16 50864209 10 + 55266484 --TGGATGGAGG i danRer11.chr16 I 1 I 3 s petMar3.PIZI01000025v1 13079216 8 + 13919858 --GTTGTGTG-- i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464119 8 + 2500603 --gctgtgGC-- i letCam1.KE993742 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e pelCri1.KK480821 11920 36 + 15983 I a score=-18291.000000 s galGal6.chrUn_NW_020110047v1 8875 13 + 11985 GGTCTCAGA------GGTG s bucRhi1.KL524332 5160 13 + 10443 CTTCTGTCA------GGTG i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22397 10 - 23246 TGGATCAC---------TA i phoRub1.KK414167 C 0 C 0 s xenTro9.chr9 17527389 13 + 80437102 AATTTCAGG------GTTG i xenTro9.chr9 I 5 N 0 s oreNil3.chrLG11 11610343 13 + 36466354 GTGAGCTGA------GGCG i oreNil3.chrLG11 I 5 C 0 s mayZeb1.JH720519 1489099 13 - 6722756 GTGAGCTGA------GGCG i mayZeb1.JH720519 I 5 C 0 s oryLat2.chr11 10681169 19 - 29412213 GGAAGTTGGATTGCTGACA i oryLat2.chr11 I 4 C 0 s angJap1.KI319851 20368 13 + 26375 GGGCTGCGA------GCTG i angJap1.KI319851 I 3 C 0 s danRer11.chr16 50864222 13 + 55266484 GGTCCCTGA------TGGG i danRer11.chr16 I 3 C 0 s petMar3.PIZI01000025v1 13079224 13 + 13919858 AATCGTTGA------AGAG i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464127 13 + 2500603 TGTCCTTGA------AGAG i letCam1.KE993742 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e thaSir1.NW_013658552v1 104859 3 - 511692 I e mm10.chr7 30819633 0 + 145441459 C e pelCri1.KK480821 11920 36 + 15983 I a score=4258.000000 s galGal6.chrUn_NW_020110047v1 8888 6 + 11985 TCGTGG s bucRhi1.KL524332 5173 6 + 10443 TGAAGG i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22407 6 - 23246 TGGAGG i phoRub1.KK414167 C 0 C 0 s thaSir1.NW_013658552v1 104862 2 - 511692 ----GA i thaSir1.NW_013658552v1 I 3 C 0 s oreNil3.chrLG11 11610356 6 + 36466354 TTGAGG i oreNil3.chrLG11 C 0 I 9 s mayZeb1.JH720519 1489112 6 - 6722756 TTGAGG i mayZeb1.JH720519 C 0 N 0 s oryLat2.chr11 10681188 6 - 29412213 TTGTGG i oryLat2.chr11 C 0 I 2 s angJap1.KI319851 20381 6 + 26375 TTGCCG i angJap1.KI319851 C 0 C 0 s danRer11.chr16 50864235 4 + 55266484 TTGT-- i danRer11.chr16 C 0 C 0 s petMar3.PIZI01000025v1 13079237 6 + 13919858 TTGCGG i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464140 6 + 2500603 CTGCGG i letCam1.KE993742 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e mm10.chr7 30819633 0 + 145441459 C e pelCri1.KK480821 11920 36 + 15983 I a score=181.000000 s galGal6.chrUn_NW_020110047v1 8894 3 + 11985 GAG s bucRhi1.KL524332 5179 3 + 10443 AAA i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22413 3 - 23246 GAG i phoRub1.KK414167 C 0 C 0 s thaSir1.NW_013658552v1 104864 3 - 511692 GTT i thaSir1.NW_013658552v1 C 0 C 0 s petMar3.PIZI01000025v1 13079243 3 + 13919858 GTG i petMar3.PIZI01000025v1 C 0 C 0 s letCam1.KE993742 2464146 3 + 2500603 gtg i letCam1.KE993742 C 0 N 0 e phaLep1.KK439289 8378 77 + 52419 I e oryLat2.chr11 10681194 2 - 29412213 I e danRer11.chr16 50864239 0 + 55266484 C e oreNil3.chrLG11 11610362 9 + 36466354 I e angJap1.KI319851 20387 0 + 26375 C e mm10.chr7 30819633 0 + 145441459 C e pelCri1.KK480821 11920 36 + 15983 I a score=-29662.000000 s galGal6.chrUn_NW_020110047v1 8897 3 + 11985 G--------------TC s bucRhi1.KL524332 5182 11 + 10443 GGTACCC------CTTC i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22416 12 - 23246 G-TATCC----AGTTTC i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11956 12 + 15983 -gtatcc----agtacc i pelCri1.KK480821 I 36 C 0 s thaSir1.NW_013658552v1 104867 16 - 511692 GGTGCCCCTGGAGTTC- i thaSir1.NW_013658552v1 C 0 N 0 s mm10.chr7 30819633 12 + 145441459 -GTTCTC----AGTGCC i mm10.chr7 C 0 I 13 s oreNil3.chrLG11 11610371 6 + 36466354 -GGGACT---------- i oreNil3.chrLG11 I 9 C 0 s oryLat2.chr11 10681196 6 - 29412213 -GTGGCC---------- i oryLat2.chr11 I 2 C 0 s angJap1.KI319851 20387 5 + 26375 --TGCTC---------- i angJap1.KI319851 C 0 C 0 s petMar3.PIZI01000025v1 13079246 3 + 13919858 --CGT------------ i petMar3.PIZI01000025v1 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e danRer11.chr16 50864239 0 + 55266484 C a score=-30993.000000 s galGal6.chrUn_NW_020110047v1 8900 7 + 11985 --GAGGTG----G s bucRhi1.KL524332 5193 5 + 10443 --AAGG------A i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22428 7 - 23246 --TGAGGG----A i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11968 11 + 15983 --tgaaaGATTAG i pelCri1.KK480821 C 0 C 0 s mm10.chr7 30819658 6 + 145441459 ---GAGTT----C i mm10.chr7 I 13 C 0 s oreNil3.chrLG11 11610377 3 + 36466354 ----------GTA i oreNil3.chrLG11 C 0 I 1 s oryLat2.chr11 10681202 3 - 29412213 ----------GTG i oryLat2.chr11 C 0 N 0 s angJap1.KI319851 20392 3 + 26375 ----------GAA i angJap1.KI319851 C 0 I 5 s danRer11.chr16 50864239 1 + 55266484 ------------A i danRer11.chr16 C 0 I 5 s petMar3.PIZI01000025v1 13079249 7 + 13919858 GACGAGA------ i petMar3.PIZI01000025v1 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I a score=949.000000 s galGal6.chrUn_NW_020110047v1 8907 10 + 11985 AGGTGGTGTA-- s bucRhi1.KL524332 5198 10 + 10443 ACGTGTTGTA-- i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22435 10 - 23246 ATTAGCTGTG-- i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 11979 10 + 15983 CTGTGCTGTA-- i pelCri1.KK480821 C 0 I 9 s mm10.chr7 30819664 10 + 145441459 AGGTACTGAA-- i mm10.chr7 C 0 C 0 s oreNil3.chrLG11 11610381 10 + 36466354 AGTTCTTGTG-- i oreNil3.chrLG11 I 1 N 0 s angJap1.KI319851 20400 10 + 26375 GCATGATGTA-- i angJap1.KI319851 I 5 I 1 s danRer11.chr16 50864245 10 + 55266484 GCACAATGTA-- i danRer11.chr16 I 5 I 1 s petMar3.PIZI01000025v1 13079256 10 + 13919858 --GGGATGTGTG i petMar3.PIZI01000025v1 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I a score=-2164.000000 s galGal6.chrUn_NW_020110047v1 8917 1 + 11985 -G s bucRhi1.KL524332 5208 1 + 10443 -T i bucRhi1.KL524332 C 0 C 0 s phoRub1.KK414167 22445 1 - 23246 -T i phoRub1.KK414167 C 0 C 0 s mm10.chr7 30819674 1 + 145441459 -C i mm10.chr7 C 0 C 0 s petMar3.PIZI01000025v1 13079266 1 + 13919858 A- i petMar3.PIZI01000025v1 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e danRer11.chr16 50864255 1 + 55266484 I e angJap1.KI319851 20410 1 + 26375 I e pelCri1.KK480821 11989 9 + 15983 I a score=474.000000 s galGal6.chrUn_NW_020110047v1 8918 1 + 11985 A s bucRhi1.KL524332 5209 1 + 10443 A i bucRhi1.KL524332 C 0 N 0 s phoRub1.KK414167 22446 1 - 23246 G i phoRub1.KK414167 C 0 I 11 s mm10.chr7 30819675 1 + 145441459 G i mm10.chr7 C 0 C 0 s angJap1.KI319851 20411 1 + 26375 A i angJap1.KI319851 I 1 N 0 s danRer11.chr16 50864256 1 + 55266484 A i danRer11.chr16 I 1 I 10 s petMar3.PIZI01000025v1 13079267 1 + 13919858 G i petMar3.PIZI01000025v1 C 0 C 0 e phaLep1.KK439289 8378 77 + 52419 I e pelCri1.KK480821 11989 9 + 15983 I a score=-2143.000000 s galGal6.chrUn_NW_020110047v1 8919 6 + 11985 A-------TGGTG s phoRub1.KK414167 22458 6 - 23246 G-------TCATG i phoRub1.KK414167 I 11 C 0 s pelCri1.KK480821 11998 5 + 15983 --------TGATG i pelCri1.KK480821 I 9 C 0 s phaLep1.KK439289 8455 5 + 52419 --------TAATG i phaLep1.KK439289 I 77 C 0 s halAlb1.KK656082 58542 13 - 59246 ATGACTTATTATG i halAlb1.KK656082 N 0 C 0 s mm10.chr7 30819676 6 + 145441459 -------ATGATG i mm10.chr7 C 0 N 0 s danRer11.chr16 50864267 6 + 55266484 -------GTGGAG i danRer11.chr16 I 10 C 0 s petMar3.PIZI01000025v1 13079268 6 + 13919858 -------AGGATG i petMar3.PIZI01000025v1 C 0 N 0 a score=3937.000000 s galGal6.chrUn_NW_020110047v1 8925 31 + 11985 TTCGGAATGatgatcttttcttccaacatcc s phoRub1.KK414167 22464 31 - 23246 ACCTGGATGACCCACAGACACCCATAGTTCC i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 12003 31 + 15983 ACCTGGACAAgaagcagttatccaaagatcc i pelCri1.KK480821 C 0 C 0 s phaLep1.KK439289 8460 31 + 52419 ACCTGGACAATGCACAGTTATGCACAAATCC i phaLep1.KK439289 C 0 I 29 s halAlb1.KK656082 58555 31 - 59246 AGCTGGACAGCACACAATTACCCAGAGATCC i halAlb1.KK656082 C 0 C 0 s danRer11.chr16 50864273 14 + 55266484 -GGTGGAAAACACCC---------------- i danRer11.chr16 C 0 C 0 a score=3939.000000 s galGal6.chrUn_NW_020110047v1 8956 8 + 11985 ACATAATG s phoRub1.KK414167 22495 8 - 23246 AGATGAGA i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 12034 8 + 15983 agatgaag i pelCri1.KK480821 C 0 C 0 s halAlb1.KK656082 58586 8 - 59246 AGATGAAG i halAlb1.KK656082 C 0 C 0 s danRer11.chr16 50864287 8 + 55266484 ACATGAAG i danRer11.chr16 C 0 N 0 e phaLep1.KK439289 8491 29 + 52419 I a score=1128.000000 s galGal6.chrUn_NW_020110047v1 8964 5 + 11985 TCAGA s phoRub1.KK414167 22503 5 - 23246 TCCAA i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 12042 5 + 15983 tcagg i pelCri1.KK480821 C 0 I 16 s halAlb1.KK656082 58594 5 - 59246 TCCAA i halAlb1.KK656082 C 0 I 16 e phaLep1.KK439289 8491 29 + 52419 I a score=21541.000000 s galGal6.chrUn_NW_020110047v1 8969 48 + 11985 TGT----------------GGAAGCTTGCAGGGAGTTCACTATCATCGTATGGCAATTCA-GGAA s phoRub1.KK414167 22508 65 - 23246 TGTACCCAACCCATGTGGCGGAAGTTTGTACATAGTGCACCATCACCGTATGCCAACTCATTGTC i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 12063 48 + 15983 ----------------GGCGGAAGTTTGTACGGAGTGCACCATTGTCGCGCGCAAACTCATTGG- i pelCri1.KK480821 I 16 I 1 s phaLep1.KK439289 8520 48 + 52419 ----------------GGCAGAAGTTTGTATGGAGCGCACCATCATCGTATGCCAACTCATTGg- i phaLep1.KK439289 I 29 N 0 s halAlb1.KK656082 58615 48 - 59246 ----------------GGTGGAAGTTTGTATGGAACGCACCATCATCGTATGCCAACTCATTGG- i halAlb1.KK656082 I 16 I 1 a score=14675.000000 s galGal6.chrUn_NW_020110047v1 9017 60 + 11985 AGTAATGATGTGGAAATTTGGAGAGGAACAAGCAGTGAAGG-AATTGCTGACCAACTC------TGG s phoRub1.KK414167 22573 67 - 23246 AGCAACGTGTTGGAAAGATGACGAGGCACCACCGGTGTGTGCAGTGGCTAACCAACTCCAACGGTGa i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 12112 61 + 15983 AATAATGATCTGGAAAGACGGAGAGGAACCAACGGTGGATGAATTGCCTGGCCAACTC------CAG i pelCri1.KK480821 I 1 C 0 s halAlb1.KK656082 58664 61 - 59246 AGTAATGACCTGAAAAGATGGAGAGGGACGAATGGTGGATGAATTGGCTGGCCAACTC------TGA i halAlb1.KK656082 I 1 C 0 a score=2820.000000 s galGal6.chrUn_NW_020110047v1 9077 3 + 11985 CAA s cotJap2.chrZ 14133149 3 + 67000979 CAA i cotJap2.chrZ N 0 C 0 s phoRub1.KK414167 22640 3 - 23246 caa i phoRub1.KK414167 C 0 C 0 s pelCri1.KK480821 12173 3 + 15983 CAA i pelCri1.KK480821 C 0 C 0 s halAlb1.KK656082 58725 3 - 59246 CAA i halAlb1.KK656082 C 0 C 0 a score=1365.000000 s galGal6.chrUn_NW_020110047v1 9080 1 + 11985 T s cotJap2.chrZ 14133152 1 + 67000979 T i cotJap2.chrZ C 0 C 0 s anaPla1.KB745936 377 1 - 888 T i anaPla1.KB745936 N 0 I 189 s phoRub1.KK414167 22643 1 - 23246 t i phoRub1.KK414167 C 0 I 3 s pelCri1.KK480821 12176 1 + 15983 T i pelCri1.KK480821 C 0 C 0 s halAlb1.KK656082 58728 1 - 59246 T i halAlb1.KK656082 C 0 C 0 a score=626.000000 s galGal6.chrUn_NW_020110047v1 9081 2 + 11985 TC s cotJap2.chrZ 14133153 2 + 67000979 TC i cotJap2.chrZ C 0 C 0 s phoRub1.KK414167 22647 2 - 23246 tc i phoRub1.KK414167 I 3 C 0 s pelCri1.KK480821 12177 2 + 15983 Ac i pelCri1.KK480821 C 0 N 0 s halAlb1.KK656082 58729 2 - 59246 AC i halAlb1.KK656082 C 0 N 0 e anaPla1.KB745936 378 189 - 888 I a score=-1097.000000 s galGal6.chrUn_NW_020110047v1 9083 4 + 11985 CAGT s cotJap2.chrZ 14133155 4 + 67000979 aaat i cotJap2.chrZ C 0 N 0 s phoRub1.KK414167 22649 1 - 23246 t--- i phoRub1.KK414167 C 0 C 0 e anaPla1.KB745936 378 189 - 888 I a score=368.000000 s galGal6.chrUn_NW_020110047v1 9087 6 + 11985 TCCACC s phoRub1.KK414167 22650 6 - 23246 tcctcc i phoRub1.KK414167 C 0 N 0 e anaPla1.KB745936 378 189 - 888 I a score=0.000000 s galGal6.chrUn_NW_020110047v1 9093 190 + 11985 AGCCAGGAGGAATCCAGGGACAATTCGGTTCATAAAGGAGTGCCCTGTTTGAGAGGTTCCTAagattcacctttctcacaaCTCACCGAGTGGGAcgggacattttccttggcatcatgggcagaatgccctggataaagagcaagaggaatccaGAAGGGCTATAActgagttgagaaagaaggattct e anaPla1.KB745936 378 189 - 888 I a score=-208.000000 s galGal6.chrUn_NW_020110047v1 9283 10 + 11985 tgtttgggcc s anaPla1.KB745936 567 10 - 888 CCTCCCCACC i anaPla1.KB745936 I 189 N 0