##maf version=1 scoring=roast.v3.3 a score=92121.000000 s galGal6.chrUn_NW_020110067v1 20 2737 + 13671 CCCCTCAATAGCAAAAGCGTAttcaaca-atcctggagaag-cctgcatttgatcaaggtgtctcatcaagacaaagctcatgcaggaagacgctcacc-gctccatctccgatgcctgacgTGGACTGGAGGCAGAAGAGGACGTC-GTGTGGTTGATGAGGAAACtccaccacatccgactgcctctgcagttccacacaggcagctcttccgctggcgcaggcagcctcgttctgctgggatctgtagaaaaggcagattggagaagtcattgacccgagatcgtttccccacgtttgggcatttgggcagccaaaggctgtccagttgggctctggagacttccgcagtgggcaagcactgatgccactgaagacattctcccgggtgatcaaggacacaccagccccatctgacaaaaccaagagagcacaaattgt----------------------------------------------cctcctctcc---------------------------------------------------------aaagtgtgc---ccgtggggagaacagatctaagccttgtgctgagacggaaaaagaagtttacctgaagaggttgggagcccacacaattgctaagttcttagcg-----gtgcatgatggagcagctcccagccagacaagccaagtgtctca---gaggttccagcgtcctggaaagcaagagc--caaaccttcagcaccactgagcacgccgtgctcacattcaccaaacaaaacCTCA--TCAtgct------tgttcttgctac----------tagcaagtagatcaagctttcccaag--tgccacgctgcagcaccaagccccagcacagcacagccgcagccatcagctgcaccagccgtgcccccgtgcccaggagctgacccaatccattcaccccacgcagccatccaccacttcaacacacaca---------------------ggcatcacgttgccagcgt---------------gagacaaagcctg------------ccatcgcatcatcgccctctgaaatgcagcagg-----gctga-----gctccccagactgag---------------ggcagcagttttc----tgacctgtagtgaggcgcgggcagct--------------gctggatgacctcctgca--ctgagcaaccg-------------ctcctcatctgtaccggcacaaac----agcgtcctggaagaaagcagaaagggattgagacaca-------catcatgcgagtcaagcgtatggggctaacagaaaaagggcctcagagctgcagagggcactgctgctcc--------------catctcc-----cacatttccaatggcaggatgcacacaccaggtgttacggtgcacccggtgtgcaggaagcatgagctgcttgttgtacac------gagacacccactggatgtccatcaaaacc-------------------------------ccaacttca--------acagaaaaaagaccaaaaaaa-ggtgcgcaggcgtgtgtgtggatgggaaaggccacg-aagagggacatg-------aaggccattgccttgtgcttaccgagaacttgccatgcagctgctcgctcagcagagggctcgggagctccctgaagtacatcttgcacagggagctcacgctgtgaatgtcccggacggtgagctccggaatctgctccgactcaaagtcatggctggagagaaggacacaaaa----acagagggcttggagaaagaggaaaacaactccaaagcaagacaacatacagtccagaa-------------------------------------------------------------------gcactcttaccgcagcttctggatcttggacgccacgccggacaggcggtagatcccctgcaccacgccgtgctgctcaatgaactcagcgcagctctgcacgacctgggggactacagaacaagggccagcgcttagctgagctcctgattcaagtcctgcttcagccgctgcccctgtcacatcccatccactaagcccagccaggctactgcttgcctcctccgtagaggagaaaaaaggctgtcgcagacggcgcagacaggcaggagccggggacaaaactggacacggacgtgttct-----tggctttcaagaaatgccaggacctgccaagcagcctgcagaaagtaattctggggaagccagagacactgccacaagtcccatcacagctcccaccgcaatggaggcgtgagacctcatgtccagaagagctaggaaactgacgcactacactctcttgggccaaaaggcttccttggttttcaggctagcgtggcattggcttacacctttggctttaagcaaatacaagtgtgccgg---cctcctatgagcattagcctcagcttccctttcag-ccataactcccacctcacgcttctccaccgctatcaacctgccccttgctagacatgatctccctttctttcatctttacatgcccaacagagagaggaagctctcaggaatgggctgttccttaccatcacggccagagtggagaagatgctctcccaggtcacagccaaacacccccccttctccttctccagctccatctcccgctgcttcggttcctctgggcgggccttcacgaaggaacgaaggaagctgaggagcttgccacgcttctttggcactgcacaacaaaaggaagaaaccagttcatttcaggttgggctcagt-ggaCCAGGCCGAGCATCACACATTCGACAGAGCACGTAAAAgcgggaagaacattgccaacaagtacctacaacaacagattttccccgtccctggaggagtccaaggccaggttggatggggccctgggcagcctggtctagtctggcattcgaagtggaggttggcagccctgcctgaggcacgggggttggagcttgatgatccttgaggtcccttcca-tcccaagccattctacaaggatcctatcgtttgcccaagccc s cotJap2.chr2 39350164 2944 - 134823679 CCCATTGAAAGTCAAAGCGTATTTGAAAGATCTCAGAGAAGGCCTGGATTGGATCAAGAT-------------CAATCTAATGAAGGAAGACACTCACCTGCTCCCTCTCCCATGGCTGACGTGGATTTGGAGCCGAAGAGGCCGTCTGTGTGGCCAATAAGGAA-TTCCACTACAGCTGTCTGTGTCTGAACTTCCAAGCTGGCAGCTCCTCCACTGGCGCAGGCTGACTGGCTCTGCTGGGatctgaagaaaaggcagattttaCAAGTCATTCCTCCAAGACTGTTTCCCCAGGTCTGA--ATTTATGCAGCCCAAAGCAGTCCAGCTGGGCTCTATAGAGTTCAACAGTGGGCAATCAGCAATGCCACCTACGAAATTCTCCTGGATGAACAAGGACAAAGTAGTACCAGCT-----AAACAAGAGAGCAGTAACTGTCACCTAGAAATTGTGTCCCTGGGGTTGGGGGAGAGCAGTCCAGgctcctcctctgctgccagaAACTTCTGACAGCTTTTATAGGAGAAGAGCACATTAGatgaagaagaagggaagattgctttctttctggagaACAGAACTAAGCGTTGTgcttaaacagaaaaagaagtttacCTTAAGAGGTTTGGAGCCCACACTATTGCTAAATTATGAGCGTCCATGTTGGTGACTGAGGAGTTCCCAGCAAGAGACGCCAAATGCCTCATCAGGTACTCAAGTGTCCTGGAAAACAAGAGGGGCAGATGTTCAGAACCAAAAAGCAAGCCGTGCTGCAGTGCACAAAACAAA-CCTCACTTCATGCTAGTTGATGTCATTGCTACCGTCCCTGAATATGAAGTAGATAAAACGTTCCCAGTGCCACCACGCTGCAGCACCAAgccct-gcaaagcacagccGCAGCCATCGGCTGCACCAACCGTGCCCCCGTGCCAAGGAACTGACCCAATCAATTGACCTGATGCAGCCTTCAGCCGCTTCAGTGTGCAGACGCATGATGTTGCAGGTGTGAGGCAACACCTGGATAGCATCATCGCCCTCTGAAAGGCAggagggctgagctcagcagaccgagcacagcactgacctgTAGtgaggagcaggcagctgctggatggcGCCCTTCATTCTCACCATCCTCTCCTCCTCGGTAGCAGCACCGGCAGCGTCCTGGAAAAAGGCAGGAAGGGATTCAGACACCAGTCAGCCTAATTAGCTGCTACAGGTTTGGGAACCGTGGGGACAGCGTGCTGGTGGTCAGCACCGAGGCAGACTTGACGCCTTCCAAGAGGCATCAGGGGAAGACCGCAGCACATAGACTGCGTCATCAAGGCCAAGCAGTGCAAGCTCAGGG-----GGGCTTTACTGCCTGATTGCGCAGTGCAGCTCCTCGCAGCAGGCATTCGTCTCCAACTCCACTTTGCTATTAACCCCATTC---TACCAATAGTTGgggaacagcaaaggaaagggaattcTCGCAAGCATGGTGAATAACTTAAATAAGCACCTCCTGGCA--CCACCAAAAGCGGCATCAGTGAGAGGTAGGATGTGGCAAAGACATGCCTCATGGGGCTAACAGAAATAAGACCTCCGAGCTGGGGCACTGCTGCAACCATCAGCCAGGACGCCCAGGGAAAAGGTACATATCTTTTCCAAGACATTGCCCTGTGCTTACCGTGAACTTGTCATACAGCTGGGTGGTCAGGAGAGGGTTCGGGAGCTCCCTGAAGTACATCTTACATACGGAGCTCACGCTGTGAATGTCACGGACGCTAAGCTCGGGAAGCTGCTCTGAATCAAATTCatggctgcagagaaggacacaGAATTGGGCAGGGGGCATTGAGAAAGACGAAAACAAGTCCAAAGCCACACAATATACAgtcaagaaaaggaaggggtTCCTCGGAGTGCCCGAAGCATGGCACGTGCCCCTACTGACAGCTGTGTCAGTCGCAGCACTCTTACCGTAGTCGCTGGATCTTGGACGTAACGCCGGACAGGCGGTATATCCCCTGCACTACGCCATTCTGCTCGATGaattcagagcagctctggaggaCCTGGGGGACTACAGAACAAGAGCCAGTGGTTAGCTGAGCTTCTTACTCAAGTCCTGGTTCAGGCCGTGCTCTTCTCACATCCCATCCACTAAGCCCAGCCAGGCTACTGCTTGCTTCCTCCTTAGAGGAGAAA----GCTGGCAGAGACA------ACTGTTAGGA-----------AACTGCACAGAGATGTGTTCTGTTCTTGGCTTTCCAGAAATGCCACGACCTATCAA-CAGCCTGCAGAAAGTAATTCTGGCAAAGCCACAGACACTGC---------------AAGTCCCATCACAG---------------------------------------------------CTCTCCTGGGAATGGAGGAATCC--AATCTAAAGACCAGAAT--------------------------AGCTAGGAAAAGGATGCAGGATGCTCTCTGTTGCCAGAAGGCTTC-CTACACTTTCAGGCCAAAAC------------------------------------AATTGCTGGATATGATCTCCTTTTC----ATCTATAGATGCCCAACGGAG----GAAGATCTCAGGAATGGGCTGTTCCTTACCATCACGGCCAGAGCGGAGAAGGTGCTCCCCCAGGTCACACCCAAACACCCCT-----TCCTTCTCTGGCTCCG------GCTGCCTCGCTCTCTGGGGCCGGGCCTTCACCAGGGAAcgaaggaaggggaggagctTGCCCCATTTCTTTGGCTCTGcgcaacaaaacaaagaaaccagtTCATTTCAGGCCTGGCTCGGTTGGACGAAGCTGAGCGTAACGCATTCGACAGAGCATGTAACAATGGGAAGAACATTCCCAACAAGGACACTCAATAACAGattttccccatccctgcaagtgcccaaggccaggttggaaggggccctggacagcctgctCTCGTTTCCTACTAAATGTGCAGGCTGGCGACCCAGACTGCGGCAGGGGCTTTGGAGCCTGAGTATCCTTTAGGCCCCTTCCAGTCCCAAGCCATTCGAGGAGGATTCTGTGACTTCCCCAAGCCC i cotJap2.chr2 N 0 I 118 a score=0.000000 s galGal6.chrUn_NW_020110067v1 2757 122 + 13671 tcattctcactgcctacaaaacagcagccctacgccccgtgggatgcaggaaggatcatcaacacagaggagaacgtgggatggataaaggaggtattcaacacagaacacacccagaaaaa e cotJap2.chr2 39353108 118 - 134823679 I a score=7597.000000 s galGal6.chrUn_NW_020110067v1 2879 389 + 13671 gactccatttgatttccccgcgccatcacatgtaacatccgtacctggctttggcgctgaattgatgagggcctcaggaatttttccgttgatgagctccacgcactcaccagggaaaaatccaacctggaacaagatcaagaagg-agatggaatactgaatgcagcatttctcaggcctcaactgttcaaccaagaaagaatggcctgcagaaaagtaaccctcattcaacatttgcagccagaagacctac--------aaaagcaactgacggagcataagatggctg-ttctcc-------gtgcttgtacaaaggacagagatgctcaact------cctgactgcctattgagcacaagaggctc--ttgcttctaagtcacatgag-gagaca------gtttcccacc--caag s cotJap2.chr2 39353226 395 - 134823679 GACCCCATTTTACTAACTCGCATTATCAAATGTAACATGTGTACCTGGCTTTCGCAATGAATTGACCAGGGACTCAGGAACTGTTCCGCTAATGAGTTCCACGCACTCACTAGGGAAAGATCCAACCtgtaacaagaacaaaaagacaggTGG-------------GCATTAGCCCAAGCCCA-------GAGCCAAAGGGAAGGTCCTCT--GACACCGACACAGGGCAACCATTTGTGTCCAGAAGCCCtcctgtgcaggcagagcaacTCC---AATCTGAGATTCCTGACTCTACTGAAGTTGCGCTCTCTTGATGGAAGCATGTGCATACCTGAAAGCCACGCTTGCCTCTC---CACCAGGGGCTCAGCTCCTTTGGTGGCATATCAGTGATGCACACCACGTCTCCCACCTGCAAG i cotJap2.chr2 I 118 I 91 a score=0.000000 s galGal6.chrUn_NW_020110067v1 3268 101 + 13671 cccagagccaaagggaaagtcctctgacagcgacacagggaagctgttgacgtccagaagccaccctgtggaggccgagcagctcaagctgacgttcctga e cotJap2.chr2 39353621 91 - 134823679 I a score=686.000000 s galGal6.chrUn_NW_020110067v1 3369 72 + 13671 cttgactgcaattgcgcccaggagtctgaagctcgtgcctacctgaaagccatgcttgcctctccaccaggg s cotJap2.chr2 39353712 56 - 134823679 CTTGACAGCAATTGCACCAATG----------------CAGCCCCCAAGGCATTTTCCCTTCTAAAACTGAA i cotJap2.chr2 I 91 I 154 a score=0.000000 s galGal6.chrUn_NW_020110067v1 3441 157 + 13671 gctctgctcctttgctggcatatcaagaacgcacaccaggtctcccacctgcaagacattgcaacatcaatcccagcgtcagcacagctgggaggaaagcacagctgaaatggcacccttcttctgcactgccaaagagcgcacagcttgagagcaa e cotJap2.chr2 39353768 154 - 134823679 I a score=33920.000000 s galGal6.chrUn_NW_020110067v1 3598 978 + 13671 ttgcaccggggcagctcttcaggcatttcccgtggaaagctgaacgtggaggtacaagagtcactgccttacacaccagacagaat------------acagtgcaagcatgccatatgaaaccatcttttagacatggctgaactcctccctgcatccaacccagtgcaagtcctatctggacctgcatcttctgggcttcgcctcacaaggcattctgaaggtgtctgagaatattcctgatgcattcacacggtatactcttctggccgtgacaacaaggaacgccttctttatctgcttacctccaaggagagctcatccgctgcctgggcaacgtatctcttaataacatggccagcagcaatagctggaatattaagagatgactcctcacggaccagcagaggcttcccctggttctcaggctgaaacagagagcacaggccatggtgaggagctgaggacaaacaaggaggatttcagggtg--------------------------------------ccatctcgat-----gccactagcaaggaaatgaagcttttaaggca---------------gctcttcagggacaccgagagagc-cggaaggatgc-tctctctcttgaaa--------------------------------------------------------------agcaggagagcacaccggtggctcattctgctggctcaaggcagggaacagagaccaagcagagcttcacactgtacctccgtcaacgcccggtcaggcccacggctgatctcgctgctcgcgatgcccatcacagcaggcgcgacaagctgcaacagaaaagaaacacatttc------ctgtgctcacacagcactggatcaagagacttcttcagaactacttct-----------------------------agaaacaacaactgtgtgcagtctattcaaacgggacagccgttgcaatacgcagcactggaccaagtcgctgtccctctgctagcagatggggactctggcacaaagcagcagatgcatttgcccgcagcacgctgagagcacagtagcaggccagggagaggtgtcgctgctggggctggagctg s cotJap2.chr2 39353922 1093 - 134823679 TCACACCGGGTCTGCTCTT-------------------GCTCAGAGACCAGG---------------CTCCCACACTGGGCAGGATCTGCTTGATCAGAAGGTTCA---ATGCCCAATCCAACCATATTGGAGAGATGGCTGAACTCCTC-------CCAACCCAGCACAAGTCTAAGCTGGAACCAAACCCTCGAAGCTTAACCTCACAAGACATTCTGATGGTGCCTGAGACTATTCCTGAGGCATTCACAACCTGTACTCTCCAGTGCATGACAACAAGGAAAGC---CTGTAACTGCTTACCTCCAGGGAGACTTCATCCGGCGCCTGGGCGACGTAGCTCTTAATAACATGGGCCGCCGCAATTGCTGGTACGTTGAGAGATGATACAGCACGCTCCAGCTGCGGCTTCCACATGTTATAGGCCTGCAA-ACAGAGCAAAGTCCATGGTCAGGAGCTGAGGGCAAACGAGGAGGATTTCAAGATGAGGAGcacatctgcagagaaagctgcaggaaaggcGCTCCGTCCTTATCAGGAGCACTTCAGAAGGAGCTGCACGTCTCATGACAGTagtttctcttcctgctgtgcagcGGGTTCGGCAGGCCATGCAAAGATGCATCTCTCTCTACACAGACTAATCTGCAATGGCACTGGCACGGGCAGGTGGCCTGTCCGCCTTTGGCCCACTCTATCCAGAAGGAGAGTACACCTGCggctccctctgctggctcaacacaagaaacaaagacaagCCAGAGCTTCATACTGTACCTCCGTCACCCCAACCTCAGGCCCATCGCTGATCTTGCTGCACGCAACGCCCATCACCACAGGTGTGACCAGCTGGAACAGAGCAAAAACACgcttctgttttctctattcACACAGCACAGTATGGAGAGACTTCTTCAGAACTACCCTTGCATACCCTGCGGCATAGGCAAGTGTTGGAGAAACTACCCCTTGCTTCAGTCTATTCCAACGTGACAGCC----TATTAGGCAGTGTTGTA-CAAGTTGCTATCGCTCTGCCAGCAAATGGGGActctggcacagagcagcagatgcaTTCGCCCAGAGCGCTCTGACAGTGCGATAGCAGGGCATTAGACAGCACC-CTTCTGAGGGCTAAGCTG i cotJap2.chr2 I 154 N 0 a score=-9.000000 s galGal6.chrUn_NW_020110067v1 9462 8 + 13671 tcaagaag s cotJap2.chrZ 42822751 8 - 67000979 TAATACAG i cotJap2.chrZ N 0 I 980 a score=0.000000 s galGal6.chrUn_NW_020110067v1 9470 956 + 13671 aatttggtcaacatcgtgggaggctcccaggggaaggaaattcccaaagaagCCCCGTTGGGATGTGCACTGGCACACTGGTGGGAtactgcaggggaacctggaggcaccctgaggaaggaaactctcaccaagtattgcaatcagtggtgcttaatgtggaagttagaagatgatgagaagcggcATCGGAAGGGGACCCGTAACTAtcataccttcttacagttccTGTTTTTCTTAAGGAAGGAAGGTCCATAAAGTAACATGACCAGTTGTTAGAATGGAGTGCTCTCATCacgagactaagtactgggtgtttatggacactgaagaactgtgctgtaTGATTGGTGGGTTCTGAAGTGAATGGGACAAACGGTTTTCATGGCAGAAGTAAGTGTAATTgctaatgggaaacagaagcatgactgagggtatgtggaagtgtaactgaggggatgaagaggggacaaaggaaaaagggttacagagaaagtgagtgtatctgcactggcaggagagcaaccccccacaccccctccccgccccggaCCCGCACAGAGAGTGGTGTTGTAAACAGCATTACATGCAAAGGGGGGAGGTgcagaggatggggcactggcagtgagaatagccttcacGTGCAGAGATctcggaaacccaaaattccactgttaacactggaaatctccggggaggagaggaggaggtgaaactgaaatgtcatgctaGTTGTTTATGTAGTGCTGAgactttgggaagggaaaagctgcagaaggacgcaggctgaggaaggccaagatgagcaaggtggaacagggtggtagatccaaagagagctgagcaagagaaaggaaaaaaacggattgaggaacagagatagtaaggccattgggaagagcaacagctgttcctgttgcggTGTAGAGTAGAGCCCTAGGaccagaggtcccctc e cotJap2.chrZ 42822759 980 - 67000979 I a score=-248.000000 s galGal6.chrUn_NW_020110067v1 10426 2 + 13671 ag s cotJap2.chrZ 42823739 2 - 67000979 TC i cotJap2.chrZ I 980 I 47 a score=0.000000 s galGal6.chrUn_NW_020110067v1 10428 47 + 13671 aaagaggtagGGGAGGAGCCGGAAGAGCCCGTGGAGGGAGAGGGTTC e cotJap2.chrZ 42823741 47 - 67000979 I a score=66.000000 s galGal6.chrUn_NW_020110067v1 10475 3 + 13671 CAG s cotJap2.chrZ 42823788 3 - 67000979 CAC i cotJap2.chrZ I 47 N 0 a score=5493.000000 s galGal6.chrUn_NW_020110067v1 12834 210 + 13671 ACTGAAGCACTGACGCTCCAGTGCACCACGTATTGCCAGGCGACCATGTTTACGTTCAATCTCCCTCAGATGTACCTCTcgaaccaaagtgggaaggaccctaccaacttctcctgaccacccacaccacggccaaggtagaggggcttacaccgtggatacatcatacctgcctgaagaaagcaccaggaccacagtggaca---gcacaag s tytAlb1.KK386056 721 210 - 25684 GCAGGGGACTTGATGGGCCAGTACATAAGGTATCGCCTGGCGACTTTGTATATGTAAAGTCTCTTGCAGATCAGACCTTGGAACCGCAGTGGAAAAGACCATTCCAAGTGCTGCTGACCTC---CACAGCTATCAAAATCAAGGAGTAGAATGCCTGGTTCCATCACTCTTGAGTGAAGAAGGCTCCTGAGTCTCAATGGAGAATTGCACAAG i tytAlb1.KK386056 N 0 N 0