##maf version=1 scoring=roast.v3.3 a score=-398.000000 s galGal6.chrUn_NW_020110081v1 29 7 + 14773 acagacc s strCam1.KL206475 130 6 + 3066 gctt-cc i strCam1.KL206475 N 0 I 6 a score=0.000000 s galGal6.chrUn_NW_020110081v1 36 6 + 14773 agtaca e strCam1.KL206475 136 6 + 3066 I a score=-31.000000 s galGal6.chrUn_NW_020110081v1 42 1 + 14773 c s strCam1.KL206475 142 1 + 3066 t i strCam1.KL206475 I 6 I 30 a score=0.000000 s galGal6.chrUn_NW_020110081v1 43 29 + 14773 ctcagtacagaccagtacagaccagtata e strCam1.KL206475 143 30 + 3066 I a score=-114.000000 s galGal6.chrUn_NW_020110081v1 72 1 + 14773 g s strCam1.KL206475 173 1 + 3066 t i strCam1.KL206475 I 30 I 528 a score=0.000000 s galGal6.chrUn_NW_020110081v1 73 511 + 14773 cccagtatatcccagtacagcccagtgcttcctaaaacagcccagtatattccagtacagcccagtacagaccagtacagcccagtacaggccaatatagcccagtaaagcccagtacagaccagtatagaccagtgcagaccagtatagcccagtaTATTCCAGTACATCCCAGAACTTCTCAGTACATCCCAGTAtgccccactgcctcccagtccctcccagtatgacccattccctcccagtatggcccagtgcctcccagtccatcccagtacctcccagtccatcccagtgcctcccagtccctcccagtatgacccattgcctcccagtgcatcccagtgcctcccagtacagcccagtacctcccagtatgacccattccctcccagtccatcccagtccctcccagtcccttccagggcctcccagtccatcccagtccatcccattgcctcccagtccatcccagtccctcccagtccatcccagtacatcccagtacatc e strCam1.KL206475 174 528 + 3066 I a score=275.000000 s galGal6.chrUn_NW_020110081v1 584 9 + 14773 ctagggtct s strCam1.KL206475 702 9 + 3066 CCAGTGCTT i strCam1.KL206475 I 528 I 67 a score=0.000000 s galGal6.chrUn_NW_020110081v1 593 58 + 14773 cccagtacatcccagtatgccccacagcctcccagtccctcccagtacaccccattgc e strCam1.KL206475 711 67 + 3066 I a score=-125.000000 s galGal6.chrUn_NW_020110081v1 651 1 + 14773 c s opiHoa1.KK734811 8452 1 - 9925 G i opiHoa1.KK734811 N 0 N 0 e strCam1.KL206475 711 67 + 3066 I a score=0.000000 s galGal6.chrUn_NW_020110081v1 652 8 + 14773 tcccagta e strCam1.KL206475 711 67 + 3066 I a score=873.000000 s galGal6.chrUn_NW_020110081v1 660 9 + 14773 cctcccagt s strCam1.KL206475 778 9 + 3066 CCTCCCAGT i strCam1.KL206475 I 67 I 239 a score=0.000000 s galGal6.chrUn_NW_020110081v1 669 73 + 14773 acagcccagtatgccccactgcctcccaatgcatcccagtatctcccagtccatcccagtgcctcccagtcca e strCam1.KL206475 787 239 + 3066 I a score=69.000000 s galGal6.chrUn_NW_020110081v1 742 2 + 14773 tc s colStr1.JJRP01067332 940 2 - 1019 CC i colStr1.JJRP01067332 N 0 N 0 e strCam1.KL206475 787 239 + 3066 I a score=0.000000 s galGal6.chrUn_NW_020110081v1 744 184 + 14773 ccagtccctctcagtacataccagtgtccacccagtgccctcccagtacatcccagtcccctcccagttccctcccagtccctcccagtatatcccagtccatcccagtatatcccagtattctcccagtcccctcccagtccctctcagtatatcccagtatcctcccagtccatcccagtgc e strCam1.KL206475 787 239 + 3066 I a score=-14.000000 s galGal6.chrUn_NW_020110081v1 928 2 + 14773 cc s strCam1.KL206475 1026 2 + 3066 CA i strCam1.KL206475 I 239 I 164 a score=0.000000 s galGal6.chrUn_NW_020110081v1 930 158 + 14773 tcccagtatatcccagtccctcccattccctcccagtcccctcccggtccatcccagtatcctcccagtatcctcccagtccatcccagtatatcccagtgccgtctcagtccatcccagtgcctcccagttcctcccagtccctcccagtatatccc e strCam1.KL206475 1028 164 + 3066 I a score=191.000000 s galGal6.chrUn_NW_020110081v1 1088 2 + 14773 ag s tytAlb1.JJRD01028264 2409 2 + 2412 AG i tytAlb1.JJRD01028264 N 0 N 0 e strCam1.KL206475 1028 164 + 3066 I a score=0.000000 s galGal6.chrUn_NW_020110081v1 1090 24 + 14773 tccctcccagtataccccagtccc e strCam1.KL206475 1028 164 + 3066 I a score=91.000000 s galGal6.chrUn_NW_020110081v1 1114 1 + 14773 t s strCam1.KL206475 1192 1 + 3066 t i strCam1.KL206475 I 164 I 108 a score=0.000000 s galGal6.chrUn_NW_020110081v1 1115 119 + 14773 cccagtccctcccagtatatcccagttcatcccagtcccctcccagtccctcccagtccctcccagtatatcccagtcccctcccagtcctgccccattccctcccagtatatcccagt e strCam1.KL206475 1193 108 + 3066 I a score=100.000000 s galGal6.chrUn_NW_020110081v1 1234 1 + 14773 g s strCam1.KL206475 1301 1 + 3066 g i strCam1.KL206475 I 108 N 0 a score=13385.000000 s galGal6.chrUn_NW_020110081v1 9481 1094 + 14773 ccccatttatccccc---ccatattaagaccccattgggccccccccatattgagacccccccattttaagcccccccctttgagacccccccaaattggggacccc-----ccccatattgggacccccccatattaagacctcattgggaccccc----ccccattaaccccctccccccatatttgggaccccc----ccccatatttgggacccc-------ccccattttgagcccccc--ccaaattgggactccc----ccatattaagaccccattgggaccccc----ccatattgagacccc-----ccccattttaagcccccccccccatattaagaccccc-----cccatatttgggacccccccccccattttaagccccccc----ccatattgggacccccctgaa---attgggacccc-----ccatattaagaccccattgggaaccccccctttaagacccc-----ccccaaattggggaccccc----ccccaaattgggacccccccccattttaagccccc--------cccatttatcccccccatattaagaccccaatgggacccccc---cattttaagcccccccc----cccatattaacaccccc-cccccatatttgggacccc-----ccccattttaagccccccccatttatcccccccatattaagaccccattgggaccccccatatttacccccccccatattaagacccccccccccatatttacccccc---ccccatattaagacccccgcccccatatttgggacccc-----ccccatattggggaccccc----ccccattttaatccccccccccatattgggccccccccccatatttgggacccc-----ccccata---tttatgccccccccaattaattcccccccccccccccatatgcagccccccctc---------atcgcttcggccccccgccccaaagcggagcgccgcccccccgcacggagcagacggtgagc--gcccccccccccccccctttaatTAACCACCTCCGGAAGCCCTCATTAAGGGCGT-----TAATTAATGAGTTACG---GTTAATTAATTAACG-----------AAGGCCCCCCGCGGGTTGGGGCCGCTCATCGCCGCCGCCCCCAAACTCAAAGCGGAGCCGAACCCACACTGCGCGTCGCTGCTGCCGGT s cotJap2.chrUn_NW_015440882v1 7 1074 + 1081 ccccatagaacccatagaccccattaagaccccatagggacccc-----ataga---------------------ccccatagagaccca-------tagggaccccatagaccccata--gggaccccat-------agaccctatagggaccccatagaccccacagaccccatagagacaccattgggaccccatacaccccata---gagacaccatagagacaccatagtgaccccatagaccctatagggaccccatagaccccgtagaaaccccatagggaccccataaaccccatagagaccccatagaccccatagaga----------ccctatagggaccacatagaacccata---gggacccca----------tagggaccccatagaccctatagggaccccatagaccccatagggaccccatagaccccatagagacaccatag---accccac-----agaccccatagacccca---tagtgaccccatagaccccatacagaccccatagaccctatagagaccccatagggaccccatagatccc------atagagacaccatagtgaccccataaacgctatagggaccccatagaacccatagagacaccatagaccccata---gagacaccatagaccccataggga-----ccccatagacccc------atagagaccccatagggaccccataga-----------ccacatagagacacc-------atagggacgccatagacactatagggacaccatagaccccaca-----gaccccataaaccccata---gagaccccatagaccccatagggaccccatagaccccataga-------ccccata---gagaccccataaaccccatagaccctatgggacccca---tagaccccattaacccttctat---cagcccccccTACAGCTGCTGATCGCTTCGGCCCCCCGCCCCAAAGTGGAGCCCA--CCCCCAACACGGAGCACACGGTGAGCTAATTAAccccccccACCACCTAATTAACA------------TCTCATTATGCATGCACGCGTAATTAATTAACTATgcatattaattaattaatatggCCTCATTAAAGGTTCCCCGTGGGCTGGGGCTCCTCATTGCTGCGGCCCCAAAACTCAAACAGGAGCCGccccccccGTGTGGGTCATTGGTACCGGT i cotJap2.chrUn_NW_015440882v1 N 0 N 0