##maf version=1 scoring=roast.v3.3 a score=1567.000000 s galGal6.chrUn_NW_020110112v1 9959 501 + 18989 GGAAACGCAAATAAGCCAATtcaatgccag--gccaggcaaggccatgcaaca-------TAAGGCCAgggagagcaaggcaaggcatttcCAGGCTAGTCacggcagg-gcaaggcaaggccagtcaaggcaaggaaagtccatgcatgtc-----caggcccggca--ggcaaggcaaggcacgcccaggaaaggcgaggctagcccagcacagtcacagctagggaaggcaggaccacgccaggcaaggccaagcaaaacaaggcataggcaa-----ggccaggcaatgtaCGGCCAGGAAAGTCCGTGCCATGCATG-GCAAAGAACGGAAAGTCAAAGACAAGCCTTgtcttacctggccttgaaccgcCTGGCTA-ATCCACgctaatccaggccaggcaaggcccggcctATCAAGACCCTGCAAAGCAAGACAAGAAATATCCAGGCAGGAAAGGACAGGCTATGGCAGCTTCGGCGAGATGTGACCAGG-------CGAGGCcatacagagcaaggcaaggc s angJap1.KI326221 3787 491 - 6067 GGCGATGAAGATGACCCTCCTCTCCAGCAGCAGCGAGGCGAAGACCTGCAGCAGCCGCTCCACGCTCAGGCAGAGCAG---CAGGCTCTCAAAGTCCACGTGCTCCAGGCGCGAGTCCACG--GGCCGGCACAGGGTCAGCACCTGGGGGGCGGAGACGGGACGGGCGTGAGCAGGGCAGGGTGGGCTGGGTTTGAGCAGGGCGGGACGGGCGTGAGCAGAGACGGGATGGGTGCGATCAGGACGGG-ACGAGTGGGAGAAAGGCGGGACAGGCGAAAGCAGAACGGGCTGGGTGTAACCAGGA-----CGGGACGGGCGTGAGCAGAGACGGGACAGGCGGAAGCA---------------------GAACGGGCTGGGTGTAACCAGGACAGCATGGGTGTGACCACGACGGGATGGGCGGGA---------GCAAGACGGGACGGGCATGAACAGGACGGGACGGGCGGGACCAGGTTGGGCTGGATGTGACCAGGGCAGGAATGGGGCGGTCCTTGGCAGGGCGTGGC i angJap1.KI326221 N 0 N 0 a score=297.000000 s galGal6.chrUn_NW_020110112v1 13730 8 + 18989 atgGCCAG s araMac1.AOUJ01241610 52 8 - 4039 ATGATCTg i araMac1.AOUJ01241610 N 0 N 0 a score=226.000000 s galGal6.chrUn_NW_020110112v1 15128 11 + 18989 tgccatgccgt s oryLat2.ultracontig106 242082 11 + 688894 TGACAGGACGG i oryLat2.ultracontig106 N 0 C 0 a score=-820.000000 s galGal6.chrUn_NW_020110112v1 15139 1 + 18989 -g s xenTro9.chrUn_NW_016683503v1 241482 1 + 335852 -G i xenTro9.chrUn_NW_016683503v1 N 0 C 0 s oryLat2.ultracontig106 242093 1 + 688894 T- i oryLat2.ultracontig106 C 0 C 0 a score=-489.000000 s galGal6.chrUn_NW_020110112v1 15140 55 + 18989 ccatgcat-----tgctaggccaggcaaggtaacgcCTGGGAATGCCAGGCCTTGCTACG--- s xenTro9.chrUn_NW_016683503v1 241483 55 + 335852 CCATGCTA-----ATACAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCAAACTAAT--- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s fr3.chr15 4679750 63 + 11516971 CCATGTAAGGTCAGACCAGACCAGATGAGAACAGGCCAGAACAGTTCAGAACAAACTGATTTG i fr3.chr15 N 0 C 0 s oryLat2.ultracontig106 242094 61 + 688894 CCATGCAGGAC--GTCCATGACAGGACGGTGCATGACAGGACGGTCCATGCAGGACGTCCATG i oryLat2.ultracontig106 C 0 C 0 a score=-32188.000000 s galGal6.chrUn_NW_020110112v1 15195 175 + 18989 ACCGGGCAGGAT-----------AGGCTTGAGCATTC-CAGgctaat-----ccaggc----cag----gcaaggcccggcctATCAAGG-ACGtgcaatgc-aaga-caagaaatgtcCTGGCAGGAAAGGACAGGCT-----ATGGCTGGCTCGG-----------CGAGAT----GTGACCAGGCGAGGTCaaacagagcaaggcaaggcaaaatgaATC s tauEry1.KL453161 1240 153 - 2189 ACGGGACACGAT-----------AAGTC---ACGTGA-CACGCTAAG-----TCACGTGACACAC----GAAGGCACTGACATGCCAAGGCATGTGACACGCTAAGG-CACCCGACACACTA--AGGCACCAACACGCT-----AAGGCATGCTGGG-----------------------------ACATGCTAAAGTACGCCAAGGGCACGC---------T i tauEry1.KL453161 N 0 C 0 s xenTro9.chrUn_NW_016683503v1 241538 181 + 335852 ACAGGCtaagataatac------aggctaaaataata-caggctaagataatacaggc----taa----gataagataggccaagctaat-acaggccaagctaata-caggccaagctaatgtaggc-----caagct-----aatgtaggccaagctaatataggccaagct----aatacaggccaagctaatacaggccaagctaaTA----------- i xenTro9.chrUn_NW_016683503v1 C 0 I 6 s fr3.chr15 4679813 188 + 11516971 ATCTGATCTCATCTGGTCCTGTCTGGTCCAGATGAGATCAGATTAAATCAATTTAGAC----CAGACCAGATAGATCAGTTCACTCCAGT-GCAGTTCAGAT-GAGACCAGTTCAAACCAGTTCAGACAAGACCAGATCAAACAAATCCAGACCAGA-----------TCAGTT----CAGAACACACAAGAC----CAGTTCAAATGAGACC---------- i fr3.chr15 C 0 C 0 s oryLat2.ultracontig106 242155 168 + 688894 ACAGGA-----------------CGGTCCATGCAGGA-CGGTTCATGACAAGACGGTC----CAT----GACAGGACGGTCCATGACAGG-ACGGTCCATGC-AGGA-CGGTTCATGACAGGACGGTCCATGACAGGAC-----GGTCCATGACAGA-----------TCGGTCCATGCAGGACGTCCATGACAGGACGGTCCATGACAGGAC---------- i oryLat2.ultracontig106 C 0 C 0 a score=-68263.000000 s galGal6.chrUn_NW_020110112v1 15370 280 + 18989 GAGGTACACGAAGGAAACGTAA-----GGCAAGCCCATACATGCCAGGAAAGTCA--AAGCCAGG------------ACAGCTCA----------TGCCAA-----GAGAGGCCAGGTTAA-----CCAACTGTAGTCCAAACCA---GTGCAGTTCAGCTAAGGCGAGT----------CAAATTACACAAAG--GCAAGTcaagga-----------aatgc---------------aaaaca----------gGCAA----TGCAAAGCTAGGCCAGGTAAGGCCATG-AAGGGTAAGGCAAAGAAAGTTGCAACTTGCAATTC---------TAGGCTAAGCTA----------CTCAAGGCAAGTCCAGTCAAAtcaaggaaagtc-----cag s tauEry1.KL453161 1393 241 - 2189 GGGACACGCTAAGGCACACCAA-----GGCACGCCAGCGCATGCCAGGACACACC--AAGGCACA------------CCGGCACA----------TGCTGA-----GGCATGCTGGGACA-------------------------------------CGCTAAGGCACGC----------CTCAGCACATCGGG--ACACGCCAAAGC-----------ACTCC---------------AGCACA----------TGCCA----AGGCACGCTGGGACACGCCAGCACACGCCAAGGCACGACAGAGCACACTGCA----------C---------CACGATGGGCCG-----------TCCACGCACACGCATGTAACTCTGTGCACACG-----CCT i tauEry1.KL453161 C 0 C 0 s xenTro9.chrUn_NW_016683503v1 241725 252 + 335852 AAGATAATACAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCAAGCTAATAT--AGGCCATG------------CTAATATA----------GGCCAAACTAATACAGGCCAAGCTAATATAGGCCATGCTAATACAGGCCA------------AGCTAATACAGGCCAAGCTAATACAGGCCATGCTAAT--ACAGGCCAAGCT-------------------------------AATACA----------GGCCA----TGCTAATACAGGCCAAGCTAATATAGGCCAAG------------------------------C---------TAATACAGGCC---------------AAGCTAATACAGG-----CCATGCTAATA-----CAG i xenTro9.chrUn_NW_016683503v1 I 6 C 0 s xenLae2.chr1S 217393 297 + 179946965 GAGGTAATAGGGGGAAGCCTGA-----GGTAAACCCATAGATGGCAGGACAGTCTTGAAGCCATAGGAAAGCAAGGTTTAATAAA----------GATTAAACT--TACAGAACAGGTGCA-----GCAACAAAAATACAGGCAG------------TGATGGGGAAAAC--AGCAATCAGGAATCGTAGTgagaaacaggccaaggtcagaaccGGGGAATCCGCAGCAGTTGGAAGGAACACA----------GGTCAGGAGTGACAAGAAATGCCAAgcaggaatcgt---ag------------------------------t---------cagatcaggcca--------------aaGTCAATACCAGGAAATCCACGAAGGTAGGGATCAG i xenLae2.chr1S N 0 C 0 s fr3.chr15 4680001 247 + 11516971 -AGTTCAAACCA-----GTTCA-----GACAAGAC----CAGAGCAAATGAGTCC--AGACCAGG------------TCAGTTCA----------GACCAC-----ACAAGGCCAGTTCAG-----ATGAGACCAGTTCAAACCA---GTCCA-----GACAAGAC--------------CAGAGCAAACGAGT--CCAGACCAGGTC-------------------------------AGTTCA----------GACCA----CACAAGGCCAGTTCA-GATGAGAC---------CAGAGTAGTTCAGGTGGGA----------T---------CAGATCGGACCAACTTAGACCAGACCAGATGAGACCAGTTCAGACCACTTCGGAC-----CAG i fr3.chr15 C 0 N 0 s oryLat2.ultracontig106 242323 300 + 688894 -GGTCCATGACAGGACGGTCCA-----TGCAGGACGGTTCATGACAGGAAGGTCC--ATGACAGG------------ACGGTGCATGACAGGACGGTCCAT-----GACAGGACGGTGCAT-----GACAGGACGGTCCATGCAGGACGTCCA----TGACAGGACG-GT----------CCATGCAGGACGGT--CCATGACAGGAC-------------------------------GGTGCATGACAGGACGGTCCA----TGACAGGACGGTCCATGACAGGACGGTGCATGACAGGACGGTCCATGCAGGA----------CGGTCCATGACAGATCGGTCCATGCAGGAC--GTCCATGACAGGACGGTGCATGACAGGACGGTC-----CAT i oryLat2.ultracontig106 C 0 I 15 a score=-13631.000000 s galGal6.chrUn_NW_020110112v1 15650 50 + 18989 -----gcaagt-ccagcgCATGAAGTGC-AAGGCATgactagtaaaa--aaaaaggcCC s tauEry1.KL453161 1634 51 - 2189 -----GCACATGCCAGCACACGCCTGGC-CGTGCCCGACCTTCACCG--CGTTCTGCCC i tauEry1.KL453161 C 0 C 0 s xenTro9.chrUn_NW_016683503v1 241977 34 + 335852 -----GCCAAA-CTAATACAGGCCATGCTAATACAGGCCA------------------- i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s xenLae2.chr1S 217690 27 + 179946965 -----GACACA-TGAACACTGG-------AATTTAAGAAC------------------- i xenLae2.chr1S C 0 N 0 s oryLat2.ultracontig106 242638 57 + 688894 GACAGGACGGT-GCATGACAGGACGGTC-CATGCAGGACGGTCCATGACAGATCGGTCC i oryLat2.ultracontig106 I 15 C 0 a score=-5047.000000 s galGal6.chrUn_NW_020110112v1 15700 153 + 18989 GGCCAAATAatgcaaggacaggca-aggccacgcaagtCCAGGCTATGCCTGGAAAGTCCTGGaacg-gccaggcaaggcaaggtaagtcTATGCAAGGCCATGC----TAGTcca-ggcacggccaggcaaggcaagtccagccA-GTCAcggcatggca s tauEry1.KL453161 1685 149 - 2189 ATTCA-------CCGGGACACGCACACgccatgacacaccatgacatgccgtgaca-tgctgcaacatgccatgacacactatgacacgccatgacacaccatga----catgccgtgacatgctgtgacatgccatgacatgccatgacacgctatgaca i tauEry1.KL453161 C 0 N 0 s xenTro9.chrUn_NW_016683503v1 242011 145 + 335852 ----------AGCTAATACAGGCC-AAGGTAATACAGGCCAAGCTAATATAGGCCA-AGCTAATATAGGCCAAGCTAATACAGGCCAAGGTAATATAGGCCAAGC----TAATACAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCATGCTAATACA i xenTro9.chrUn_NW_016683503v1 C 0 C 0 s oryLat2.ultracontig106 242695 146 + 688894 ----------ATGCAGGACGGTCC-ATGACAGGAC-GTCCATGACAGGACGGTCCA-TGACAGGACGGTCCATGACAGGACGGTGCATGACAGGACGGTCCATGCAGGACGGTCCATGACAGATCGGTCCATGC--AGGACGTCCATGACAGGACGGTGCA i oryLat2.ultracontig106 C 0 C 0 a score=1452.000000 s galGal6.chrUn_NW_020110112v1 15853 259 + 18989 aggcaaggacagtcaaggcaaggaa----attccaggcaagtcaaggttaggcaaagcaatgcaagtcat---------ggccaagcaaaacaaggcaaggccaggaatgtccaggcaaagccaggcaaag-taaaacagtgcaaaataaggaaaggccaggcatagcaaggcctggc-----ccggccaggcaaggcaaagcaaggcaagggaaggcca-gtcAAAGCAAGCCAGGTCCAGATAAGTCctgtccaggcaaggcaaggcatagcaaacc s xenTro9.chrUn_NW_016683503v1 242156 273 + 335852 GGCCAAGCTAATACAGGCCAAGCTA----ATACAGGCCAAGCTAATATAGGCCAAGCTAATACAGGCCATGCTAATACAGGCCAAGCTAATATAGGCCAAGCTAATACAGGCCAAGGTAATATAGGCCAAGCTAATACAGGCCAAGCTAA-TACAGGCCAAGCTAATACAGGCCAAGCTAATATAGGCCATGCTAATACAGGCCAAGCTAATATAGGCCATGCTAATACAGGCCAAGCTAATACAGGCCATGT-TATGCATTGGAAGATGTAGCAGCCC i xenTro9.chrUn_NW_016683503v1 C 0 I 365 s oryLat2.ultracontig106 242841 257 + 688894 TGACAGGACGGTCCATGACAGGACGGTCCATGCAGGACGGTTCATGACAGGACGGTCCATGACAGGAC-----------GGTCCATGACAGGACGTCCATGC-AGGACGGTCCATGACAGAACGGTCCATGACAGGACGGTCCATGACAG-GACGGTCCATGC------AGGACGGTCCATGACAGGACGGTCCATGACAGGACGGTCCATGACAGGACG-GTCCATGCAGGACGGTCCATGACAGGACG-GTCCATG-ACAGGACGGTTCTGCAGATC i oryLat2.ultracontig106 C 0 C 0 a score=-847.000000 s galGal6.chrUn_NW_020110112v1 16112 41 + 18989 -----------aaggcaaggcatagcaaagataagc-aaaacaaggcaagtcc s xenTro9.chrUn_NW_016683503v1 242794 42 + 335852 -----------TAGGCAAAGCTAATGTAGGCCAAGCTAATACAGGCCAAGCTA i xenTro9.chrUn_NW_016683503v1 I 365 C 0 s oryLat2.ultracontig106 243098 48 + 688894 CTGGATCTCACTGGAAGAATC----CAGAGATGACC-CAGACCAGAGAAGTCC i oryLat2.ultracontig106 C 0 N 0 a score=7857.000000 s galGal6.chrUn_NW_020110112v1 16153 627 + 18989 aaacaagacaagaca----agtcaaggc--atgcagggc---------caggcaaggccaagtaagtcaaggcaagtgcaggcaaagC-AGAACAAGTTCAGGCCAGGTAGGGCAAG-----GCACggaaaagcaatgcaaggcaagtccatgAAACACAATTGAATGT----CAAActaggcagggccaggcaacTCCAAG-TACGTcacggcaagtccaggcaatgaAGGGCAAG----TACAGGCAAGGC--ATGCTATGTCCAGGcgaggcagggaaaggcaaggcaaggcatggcaatcCAAGGCAAGCCCATGCAACGCTAGGCAATGCTAGCCAAGTACAGGCAAGGTcatgcaagacaaaacaaggtcatgccaggcaaggcaaggctaggctcggccaagaatggcaacgctaggcaaggcaaggcaaaccca-ctcaaggcaaggcactccatggcaaatctaggcaaggc-----caggcaatgc-----aaggcaagaccagtcaaagccaggcaaggcaaggcgacgctaggaaaggtcaggcaaggcaagacatagcaaaacagcgccaggccaggcacggAAACTCCAGGCATGGCCATGCCATGCAGGGGAAGGCCttgcaagttaaggccaggccaggcagttcAAGGCCAGC s xenTro9.chrUn_NW_016683503v1 242836 662 + 335852 ATACAGGCCAAGCTAATACAGGCAAAGCTAATGTAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCAAAGCTAATGTAGGCCAAGCTAATACAGGCAAAGCTAATGTAGGCCAAGCTAATACAGGCAAAGCTAATGTAGGCCAAGCTAATACAGGCCAAGCTAATGTAGGCCAAGCTAATACAGGCCAAACTAATACAGGCCAAGCTAATACAGGCAAAGCTAATGTAGGCCAAGCTAATACAGGCAAAGCTAATG-TAGGCCAAGCTAATACAGGCCAAACTAATATAGGCCATGCTAATACAGGCCAAGCTAATGTAGGCCAAGCTAATACAGGCCAAACTAATACAGGCCAAGCTAATACAGGCCAAGCTAATA-CAGGCCAAGCTAATATAGGCCATGCTAATATAGGCCAAGCTAATATAGGCCAAGCTAATACAGGCCAAGGTAATATAGGCCA-AGCTAATATAGGCCAAGCTAATACAGGCCATGCTAATACAGGCCAAGCTAATATAGGCCAAGCTAATATAGGCCATGCTAATACAGGCCAAGCTAATACAGGCCAAGCTAA-----TATAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCAAGCTAATACAGGCCATGTTATACATTGGAAGATCAGC i xenTro9.chrUn_NW_016683503v1 C 0 N 0 a score=-108.000000 s galGal6.chrUn_NW_020110112v1 16903 4 + 18989 TCT---C s cucCan1.KL447538 382860 7 - 385426 TCTGAAC i cucCan1.KL447538 N 0 I 2460 a score=0.000000 s galGal6.chrUn_NW_020110112v1 16907 223 + 18989 TTtccgtgccttgccttgcctggcctttcgtGGCCTTTCCTCGCAAGggcttgccttgttttgccccGGCTTTGCGTGGACTTGTCTGGACATGGCTTGCTTTGACAGGCCTTGAGTTGCCTAGCGTTGTTTTGCCTTTCTACGTCTGTCCAGTCcttattttgcattgttttgccttgcctgactttgcctggactttccttgcactgccttgttttgcttg e cucCan1.KL447538 382867 2460 - 385426 I a score=269.000000 s galGal6.chrUn_NW_020110112v1 17130 4 + 18989 gcct s cucCan1.KL447538 385327 4 - 385426 GCCC i cucCan1.KL447538 I 2460 I 21 a score=0.000000 s galGal6.chrUn_NW_020110112v1 17134 21 + 18989 tgccttgctttgccttacctg e cucCan1.KL447538 385331 21 - 385426 I a score=91.000000 s galGal6.chrUn_NW_020110112v1 17155 1 + 18989 t s cucCan1.KL447538 385352 1 - 385426 T i cucCan1.KL447538 I 21 N 0