# Assembly name: mPanOnc1 haplotype 2 # Organism name: Panthera onca (jaguar) # Isolate: mPanOnc1 # Sex: male # Taxid: 9690 # BioSample: SAMN44524170 # BioProject: PRJNA1180586 # Submitter: Genomics of Brazilian Biodiversity # Date: 2025-01-08 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBKGDX01 # Assembly method: Pipeasm v. 1.0 # Expected final version: yes # Genome coverage: 69x # Sequencing technology: PacBio Revio # GenBank assembly accession: GCA_046562875.1 # Linked assembly: GCA_046562885.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_046562925.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name h2.Chr1 assembled-molecule 1 Chromosome CM102098.1 <> na Primary Assembly 240584455 na h2.Chr2 assembled-molecule 2 Chromosome CM102099.1 <> na Primary Assembly 221445943 na h2.Chr3 assembled-molecule 3 Chromosome CM102100.1 <> na Primary Assembly 207625228 na h2.Chr4 assembled-molecule 4 Chromosome CM102101.1 <> na Primary Assembly 169299531 na h2.Chr5 assembled-molecule 5 Chromosome CM102102.1 <> na Primary Assembly 158770093 na h2.Chr6 assembled-molecule 6 Chromosome CM102103.1 <> na Primary Assembly 151425583 na h2.Chr7 assembled-molecule 7 Chromosome CM102104.1 <> na Primary Assembly 148260853 na h2.Chr8 assembled-molecule 8 Chromosome CM102105.1 <> na Primary Assembly 141596417 na h2.Chr9 assembled-molecule 9 Chromosome CM102106.1 <> na Primary Assembly 140190341 na h2.Chr10 assembled-molecule 10 Chromosome CM102107.1 <> na Primary Assembly 115122847 na h2.Chr11 assembled-molecule 11 Chromosome CM102108.1 <> na Primary Assembly 95161563 na h2.Chr12 assembled-molecule 12 Chromosome CM102109.1 <> na Primary Assembly 93566799 na h2.Chr13 assembled-molecule 13 Chromosome CM102110.1 <> na Primary Assembly 88721258 na h2.Chr14 assembled-molecule 14 Chromosome CM102111.1 <> na Primary Assembly 83619006 na h2.Chr15 assembled-molecule 15 Chromosome CM102112.1 <> na Primary Assembly 71983893 na h2.Chr16 assembled-molecule 16 Chromosome CM102113.1 <> na Primary Assembly 60206859 na h2.Chr17 assembled-molecule 17 Chromosome CM102114.1 <> na Primary Assembly 61687931 na h2.Chr18 assembled-molecule 18 Chromosome CM102115.1 <> na Primary Assembly 42278268 na h2.ChrX assembled-molecule X Chromosome CM102116.1 <> na Primary Assembly 130846311 na h2.ChrY assembled-molecule Y Chromosome CM102117.1 <> na Primary Assembly 30836324 na h2.Chr15_ul_1 unlocalized-scaffold 15 Chromosome JBKGDX010000048.1 <> na Primary Assembly 88369 na h2.Chr15_ul_2 unlocalized-scaffold 15 Chromosome JBKGDX010000049.1 <> na Primary Assembly 76762 na h2.Chr16_ul_1 unlocalized-scaffold 16 Chromosome JBKGDX010000032.1 <> na Primary Assembly 1595242 na h2.Chr16_ul_2 unlocalized-scaffold 16 Chromosome JBKGDX010000033.1 <> na Primary Assembly 1355683 na h2.Chr16_ul_3 unlocalized-scaffold 16 Chromosome JBKGDX010000034.1 <> na Primary Assembly 1331819 na h2.Chr16_ul_4 unlocalized-scaffold 16 Chromosome JBKGDX010000035.1 <> na Primary Assembly 1238143 na h2.Chr16_ul_5 unlocalized-scaffold 16 Chromosome JBKGDX010000036.1 <> na Primary Assembly 1079318 na h2.Chr16_ul_6 unlocalized-scaffold 16 Chromosome JBKGDX010000037.1 <> na Primary Assembly 1046741 na h2.Chr16_ul_7 unlocalized-scaffold 16 Chromosome JBKGDX010000038.1 <> na Primary Assembly 998219 na h2.Chr16_ul_8 unlocalized-scaffold 16 Chromosome JBKGDX010000039.1 <> na Primary Assembly 894202 na h2.Chr16_ul_9 unlocalized-scaffold 16 Chromosome JBKGDX010000040.1 <> na Primary Assembly 827446 na h2.Chr16_ul_10 unlocalized-scaffold 16 Chromosome JBKGDX010000041.1 <> na Primary Assembly 685426 na h2.Chr16_ul_11 unlocalized-scaffold 16 Chromosome JBKGDX010000042.1 <> na Primary Assembly 621281 na h2.Chr16_ul_12 unlocalized-scaffold 16 Chromosome JBKGDX010000043.1 <> na Primary Assembly 620398 na h2.Chr16_ul_13 unlocalized-scaffold 16 Chromosome JBKGDX010000044.1 <> na Primary Assembly 438064 na h2.Chr16_ul_14 unlocalized-scaffold 16 Chromosome JBKGDX010000045.1 <> na Primary Assembly 310747 na h2.Chr16_ul_15 unlocalized-scaffold 16 Chromosome JBKGDX010000046.1 <> na Primary Assembly 260220 na h2.Chr16_ul_16 unlocalized-scaffold 16 Chromosome JBKGDX010000047.1 <> na Primary Assembly 66617 na h2.Chr18_unloc_1 unlocalized-scaffold 18 Chromosome JBKGDX010000019.1 <> na Primary Assembly 183671 na h2.ChrY_unloc_1 unlocalized-scaffold Y Chromosome JBKGDX010000021.1 <> na Primary Assembly 4000634 na h2.ChrY_unloc_2 unlocalized-scaffold Y Chromosome JBKGDX010000022.1 <> na Primary Assembly 2955009 na h2.ChrY_unloc_3 unlocalized-scaffold Y Chromosome JBKGDX010000023.1 <> na Primary Assembly 2919399 na h2.ChrY_unloc_4 unlocalized-scaffold Y Chromosome JBKGDX010000024.1 <> na Primary Assembly 2466858 na h2.ChrY_unloc_5 unlocalized-scaffold Y Chromosome JBKGDX010000025.1 <> na Primary Assembly 2144932 na h2.ChrY_unloc_6 unlocalized-scaffold Y Chromosome JBKGDX010000026.1 <> na Primary Assembly 1663128 na h2.ChrY_unloc_7 unlocalized-scaffold Y Chromosome JBKGDX010000027.1 <> na Primary Assembly 1066271 na h2.ChrY_unloc_8 unlocalized-scaffold Y Chromosome JBKGDX010000028.1 <> na Primary Assembly 876513 na h2.ChrY_unloc_9 unlocalized-scaffold Y Chromosome JBKGDX010000029.1 <> na Primary Assembly 514737 na h2.ChrY_ul_1 unlocalized-scaffold Y Chromosome JBKGDX010000031.1 <> na Primary Assembly 27874 na h2.h2tg000074l_path unplaced-scaffold na na JBKGDX010000050.1 <> na Primary Assembly 32305 na h2.h2tg000153l_path unplaced-scaffold na na JBKGDX010000051.1 <> na Primary Assembly 32148 na h2.h2tg000170l_path unplaced-scaffold na na JBKGDX010000052.1 <> na Primary Assembly 102292 na h2.h2tg000174l_path unplaced-scaffold na na JBKGDX010000053.1 <> na Primary Assembly 150830 na h2.h2tg000175l_path unplaced-scaffold na na JBKGDX010000054.1 <> na Primary Assembly 200862 na h2.h2tg000180l_path unplaced-scaffold na na JBKGDX010000055.1 <> na Primary Assembly 31647 na h2.h2tg000182l_path unplaced-scaffold na na JBKGDX010000056.1 <> na Primary Assembly 146243 na h2.h2tg000185l_path unplaced-scaffold na na JBKGDX010000057.1 <> na Primary Assembly 24300 na h2.h2tg000192l_path unplaced-scaffold na na JBKGDX010000058.1 <> na Primary Assembly 22797 na h2.h2tg000196l_path unplaced-scaffold na na JBKGDX010000059.1 <> na Primary Assembly 186036 na h2.h2tg000200l_path unplaced-scaffold na na JBKGDX010000060.1 <> na Primary Assembly 44046 na h2.h2tg000201l_path unplaced-scaffold na na JBKGDX010000061.1 <> na Primary Assembly 31471 na h2.h2tg000203l_path unplaced-scaffold na na JBKGDX010000062.1 <> na Primary Assembly 58874 na h2.h2tg000211c_path unplaced-scaffold na na JBKGDX010000063.1 <> na Primary Assembly 112448 na h2.h2tg000212l_path unplaced-scaffold na na JBKGDX010000064.1 <> na Primary Assembly 168546 na h2.h2tg000214l_path unplaced-scaffold na na JBKGDX010000065.1 <> na Primary Assembly 103053 na h2.h2tg000217l_path unplaced-scaffold na na JBKGDX010000066.1 <> na Primary Assembly 52816 na h2.h2tg000219l_path unplaced-scaffold na na JBKGDX010000067.1 <> na Primary Assembly 32395 na h2.h2tg000220l_path unplaced-scaffold na na JBKGDX010000068.1 <> na Primary Assembly 111451 na h2.h2tg000223l_path unplaced-scaffold na na JBKGDX010000069.1 <> na Primary Assembly 32038 na h2.h2tg000224c_path unplaced-scaffold na na JBKGDX010000070.1 <> na Primary Assembly 111988 na h2.h2tg000225l_path unplaced-scaffold na na JBKGDX010000071.1 <> na Primary Assembly 52324 na h2.h2tg000228l_path unplaced-scaffold na na JBKGDX010000072.1 <> na Primary Assembly 33171 na h2.h2tg000229l_path unplaced-scaffold na na JBKGDX010000073.1 <> na Primary Assembly 29857 na h2.h2tg000232l_path unplaced-scaffold na na JBKGDX010000074.1 <> na Primary Assembly 33066 na h2.h2tg000234l_path unplaced-scaffold na na JBKGDX010000075.1 <> na Primary Assembly 18515 na h2.h2tg000235l_path unplaced-scaffold na na JBKGDX010000076.1 <> na Primary Assembly 32608 na h2.h2tg000237l_path unplaced-scaffold na na JBKGDX010000077.1 <> na Primary Assembly 33045 na h2.h2tg000238l_path unplaced-scaffold na na JBKGDX010000078.1 <> na Primary Assembly 108549 na h2.h2tg000240l_path unplaced-scaffold na na JBKGDX010000079.1 <> na Primary Assembly 35374 na h2.h2tg000241l_path unplaced-scaffold na na JBKGDX010000080.1 <> na Primary Assembly 28721 na h2.h2tg000242l_path unplaced-scaffold na na JBKGDX010000081.1 <> na Primary Assembly 32970 na h2.h2tg000244l_path unplaced-scaffold na na JBKGDX010000082.1 <> na Primary Assembly 55567 na h2.h2tg000245l_path unplaced-scaffold na na JBKGDX010000083.1 <> na Primary Assembly 29632 na h2.h2tg000246l_path unplaced-scaffold na na JBKGDX010000084.1 <> na Primary Assembly 33202 na h2.h2tg000247l_path unplaced-scaffold na na JBKGDX010000085.1 <> na Primary Assembly 32050 na