# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.F.T.1A.1 # Taxid: 2209 # BioSample: SAMN02708961 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPI01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 43.2x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000978965.1 # RefSeq assembly accession: GCF_000978965.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000978985.1 GCF_000978985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold46_1_size30817-refined unplaced-scaffold na na JJPI01000001.1 = NZ_JJPI01000001.1 Primary Assembly 30717 na scaffold130_1_size2912-refined unplaced-scaffold na na JJPI01000002.1 = NZ_JJPI01000002.1 Primary Assembly 2812 na scaffold112_1_size6026-refined unplaced-scaffold na na JJPI01000003.1 = NZ_JJPI01000003.1 Primary Assembly 6026 na scaffold121_1_size4208-refined unplaced-scaffold na na JJPI01000004.1 = NZ_JJPI01000004.1 Primary Assembly 4108 na scaffold103_1_size8151-refined unplaced-scaffold na na JJPI01000005.1 = NZ_JJPI01000005.1 Primary Assembly 7534 na scaffold99_1_size8673-refined unplaced-scaffold na na JJPI01000006.1 = NZ_JJPI01000006.1 Primary Assembly 8673 na scaffold90_1_size13231-refined unplaced-scaffold na na JJPI01000007.1 = NZ_JJPI01000007.1 Primary Assembly 13207 na scaffold28_1_size43761-refined unplaced-scaffold na na JJPI01000008.1 = NZ_JJPI01000008.1 Primary Assembly 43761 na scaffold26_1_size47240-refined unplaced-scaffold na na JJPI01000009.1 = NZ_JJPI01000009.1 Primary Assembly 46884 na scaffold117_1_size5365-refined unplaced-scaffold na na JJPI01000010.1 = NZ_JJPI01000010.1 Primary Assembly 5365 na scaffold37_1_size53628-refined unplaced-scaffold na na JJPI01000011.1 = NZ_JJPI01000011.1 Primary Assembly 53428 na scaffold5_1_size95107-refined unplaced-scaffold na na JJPI01000012.1 = NZ_JJPI01000012.1 Primary Assembly 95107 na scaffold51_1_size28301-refined unplaced-scaffold na na JJPI01000013.1 = NZ_JJPI01000013.1 Primary Assembly 28221 na scaffold65_1_size21687-refined unplaced-scaffold na na JJPI01000014.1 = NZ_JJPI01000014.1 Primary Assembly 21687 na scaffold4_1_size95158-refined unplaced-scaffold na na JJPI01000015.1 = NZ_JJPI01000015.1 Primary Assembly 94850 na scaffold47_1_size46334-refined unplaced-scaffold na na JJPI01000016.1 = NZ_JJPI01000016.1 Primary Assembly 46082 na scaffold151_1_size818-refined unplaced-scaffold na na JJPI01000017.1 = NZ_JJPI01000017.1 Primary Assembly 818 na scaffold75_1_size17587-refined unplaced-scaffold na na JJPI01000018.1 = NZ_JJPI01000018.1 Primary Assembly 17587 na scaffold8_1_size73570-refined unplaced-scaffold na na JJPI01000019.1 = NZ_JJPI01000019.1 Primary Assembly 73470 na scaffold50_1_size28482-refined unplaced-scaffold na na JJPI01000020.1 = NZ_JJPI01000020.1 Primary Assembly 28482 na scaffold116_1_size5468-refined unplaced-scaffold na na JJPI01000021.1 = NZ_JJPI01000021.1 Primary Assembly 5468 na scaffold62_1_size22680-refined unplaced-scaffold na na JJPI01000022.1 = NZ_JJPI01000022.1 Primary Assembly 22680 na scaffold23_1_size78887-refined unplaced-scaffold na na JJPI01000023.1 = NZ_JJPI01000023.1 Primary Assembly 78787 na scaffold146_1_size1144-refined unplaced-scaffold na na JJPI01000024.1 = NZ_JJPI01000024.1 Primary Assembly 1144 na scaffold41_1_size33920-refined unplaced-scaffold na na JJPI01000025.1 = NZ_JJPI01000025.1 Primary Assembly 33920 na scaffold88_1_size13597-refined unplaced-scaffold na na JJPI01000026.1 = NZ_JJPI01000026.1 Primary Assembly 13597 na scaffold20_1_size55994-refined unplaced-scaffold na na JJPI01000027.1 = NZ_JJPI01000027.1 Primary Assembly 55710 na scaffold109_1_size6472-refined unplaced-scaffold na na JJPI01000028.1 = NZ_JJPI01000028.1 Primary Assembly 6472 na scaffold85_1_size14440-refined unplaced-scaffold na na JJPI01000029.1 = NZ_JJPI01000029.1 Primary Assembly 14340 na scaffold63_1_size22520-refined unplaced-scaffold na na JJPI01000030.1 = NZ_JJPI01000030.1 Primary Assembly 22520 na scaffold142_1_size1460-refined unplaced-scaffold na na JJPI01000031.1 = NZ_JJPI01000031.1 Primary Assembly 1460 na scaffold73_1_size18395-refined unplaced-scaffold na na JJPI01000032.1 = NZ_JJPI01000032.1 Primary Assembly 18295 na scaffold10_1_size74200-refined unplaced-scaffold na na JJPI01000033.1 = NZ_JJPI01000033.1 Primary Assembly 74175 na scaffold154_1_size746-refined unplaced-scaffold na na JJPI01000034.1 = NZ_JJPI01000034.1 Primary Assembly 746 na scaffold16_1_size65912-refined unplaced-scaffold na na JJPI01000035.1 = NZ_JJPI01000035.1 Primary Assembly 65829 na scaffold107_1_size6628-refined unplaced-scaffold na na JJPI01000036.1 = NZ_JJPI01000036.1 Primary Assembly 6628 na scaffold7_1_size79291-refined unplaced-scaffold na na JJPI01000037.1 = NZ_JJPI01000037.1 Primary Assembly 79291 na scaffold59_1_size24339-refined unplaced-scaffold na na JJPI01000038.1 = NZ_JJPI01000038.1 Primary Assembly 24339 na scaffold119_1_size4354-refined unplaced-scaffold na na JJPI01000039.1 = NZ_JJPI01000039.1 Primary Assembly 4314 na scaffold145_1_size1170-refined unplaced-scaffold na na JJPI01000040.1 = NZ_JJPI01000040.1 Primary Assembly 1170 na scaffold105_1_size6678-refined unplaced-scaffold na na JJPI01000041.1 = NZ_JJPI01000041.1 Primary Assembly 6678 na scaffold25_1_size47640-refined unplaced-scaffold na na JJPI01000042.1 = NZ_JJPI01000042.1 Primary Assembly 47495 na scaffold74_1_size17686-refined unplaced-scaffold na na JJPI01000043.1 = NZ_JJPI01000043.1 Primary Assembly 17604 na scaffold54_1_size26814-refined unplaced-scaffold na na JJPI01000044.1 = NZ_JJPI01000044.1 Primary Assembly 26814 na scaffold12_1_size117992-refined unplaced-scaffold na na JJPI01000045.1 = NZ_JJPI01000045.1 Primary Assembly 117579 na scaffold143_1_size1243-refined unplaced-scaffold na na JJPI01000046.1 = NZ_JJPI01000046.1 Primary Assembly 1243 na scaffold115_1_size5481-refined unplaced-scaffold na na JJPI01000047.1 = NZ_JJPI01000047.1 Primary Assembly 5481 na scaffold2_1_size106095-refined unplaced-scaffold na na JJPI01000048.1 = NZ_JJPI01000048.1 Primary Assembly 105898 na scaffold125_1_size3116-refined unplaced-scaffold na na JJPI01000049.1 = NZ_JJPI01000049.1 Primary Assembly 3116 na scaffold136_1_size2353-refined unplaced-scaffold na na JJPI01000050.1 = NZ_JJPI01000050.1 Primary Assembly 2353 na scaffold43_1_size32179-refined unplaced-scaffold na na JJPI01000051.1 = NZ_JJPI01000051.1 Primary Assembly 32179 na scaffold150_1_size832-refined unplaced-scaffold na na JJPI01000052.1 = NZ_JJPI01000052.1 Primary Assembly 832 na scaffold118_1_size5033-refined unplaced-scaffold na na JJPI01000053.1 = NZ_JJPI01000053.1 Primary Assembly 5033 na scaffold48_1_size29405-refined unplaced-scaffold na na JJPI01000054.1 = NZ_JJPI01000054.1 Primary Assembly 29305 na scaffold123_1_size3368-refined unplaced-scaffold na na JJPI01000055.1 = NZ_JJPI01000055.1 Primary Assembly 3368 na scaffold132_1_size2868-refined unplaced-scaffold na na JJPI01000056.1 = NZ_JJPI01000056.1 Primary Assembly 2868 na scaffold45_1_size31683-refined unplaced-scaffold na na JJPI01000057.1 = NZ_JJPI01000057.1 Primary Assembly 31603 na scaffold13_1_size71134-refined unplaced-scaffold na na JJPI01000058.1 = NZ_JJPI01000058.1 Primary Assembly 71034 na scaffold57_1_size24921-refined unplaced-scaffold na na JJPI01000059.1 = NZ_JJPI01000059.1 Primary Assembly 24729 na scaffold87_1_size18356-refined unplaced-scaffold na na JJPI01000060.1 = NZ_JJPI01000060.1 Primary Assembly 18247 na scaffold33_1_size41658-refined unplaced-scaffold na na JJPI01000061.1 = NZ_JJPI01000061.1 Primary Assembly 41658 na scaffold133_1_size2747-refined unplaced-scaffold na na JJPI01000062.1 = NZ_JJPI01000062.1 Primary Assembly 2747 na scaffold114_1_size6567-refined unplaced-scaffold na na JJPI01000063.1 = NZ_JJPI01000063.1 Primary Assembly 6567 na scaffold68_1_size21277-refined unplaced-scaffold na na JJPI01000064.1 = NZ_JJPI01000064.1 Primary Assembly 21277 na scaffold44_1_size32571-refined unplaced-scaffold na na JJPI01000065.1 = NZ_JJPI01000065.1 Primary Assembly 32371 na scaffold18_1_size58559-refined unplaced-scaffold na na JJPI01000066.1 = NZ_JJPI01000066.1 Primary Assembly 58479 na scaffold108_1_size6514-refined unplaced-scaffold na na JJPI01000067.1 = NZ_JJPI01000067.1 Primary Assembly 6514 na scaffold82_1_size15240-refined unplaced-scaffold na na JJPI01000068.1 = NZ_JJPI01000068.1 Primary Assembly 15151 na scaffold9_1_size71791-refined unplaced-scaffold na na JJPI01000069.1 = NZ_JJPI01000069.1 Primary Assembly 71720 na scaffold156_1_size507-refined unplaced-scaffold na na JJPI01000070.1 = NZ_JJPI01000070.1 Primary Assembly 507 na scaffold19_1_size57937-refined unplaced-scaffold na na JJPI01000071.1 = NZ_JJPI01000071.1 Primary Assembly 57530 na scaffold95_1_size10570-refined unplaced-scaffold na na JJPI01000072.1 = NZ_JJPI01000072.1 Primary Assembly 10370 na scaffold72_1_size18569-refined unplaced-scaffold na na JJPI01000073.1 = NZ_JJPI01000073.1 Primary Assembly 18433 na scaffold76_1_size17208-refined unplaced-scaffold na na JJPI01000074.1 = NZ_JJPI01000074.1 Primary Assembly 17208 na scaffold67_1_size21541-refined unplaced-scaffold na na JJPI01000075.1 = NZ_JJPI01000075.1 Primary Assembly 21541 na scaffold97_1_size9119-refined unplaced-scaffold na na JJPI01000076.1 = NZ_JJPI01000076.1 Primary Assembly 8967 na scaffold147_1_size1089-refined unplaced-scaffold na na JJPI01000077.1 = NZ_JJPI01000077.1 Primary Assembly 1089 na scaffold15_1_size68092-refined unplaced-scaffold na na JJPI01000078.1 = NZ_JJPI01000078.1 Primary Assembly 67978 na scaffold113_1_size5730-refined unplaced-scaffold na na JJPI01000079.1 = NZ_JJPI01000079.1 Primary Assembly 5530 na scaffold1_1_size112685-refined unplaced-scaffold na na JJPI01000080.1 = NZ_JJPI01000080.1 Primary Assembly 112287 na scaffold140_1_size1756-refined unplaced-scaffold na na JJPI01000081.1 = NZ_JJPI01000081.1 Primary Assembly 1756 na scaffold53_1_size27215-refined unplaced-scaffold na na JJPI01000082.1 = NZ_JJPI01000082.1 Primary Assembly 27079 na scaffold128_1_size2985-refined unplaced-scaffold na na JJPI01000083.1 = NZ_JJPI01000083.1 Primary Assembly 2985 na scaffold149_1_size922-refined unplaced-scaffold na na JJPI01000084.1 = NZ_JJPI01000084.1 Primary Assembly 922 na scaffold64_1_size22275-refined unplaced-scaffold na na JJPI01000085.1 = NZ_JJPI01000085.1 Primary Assembly 22275 na scaffold155_1_size718-refined unplaced-scaffold na na JJPI01000086.1 = NZ_JJPI01000086.1 Primary Assembly 718 na scaffold22_1_size50541-refined unplaced-scaffold na na JJPI01000087.1 = NZ_JJPI01000087.1 Primary Assembly 50446 na scaffold6_1_size164796-refined unplaced-scaffold na na JJPI01000088.1 = NZ_JJPI01000088.1 Primary Assembly 164324 na scaffold124_1_size3328-refined unplaced-scaffold na na JJPI01000089.1 = NZ_JJPI01000089.1 Primary Assembly 3328 na scaffold79_1_size16646-refined unplaced-scaffold na na JJPI01000090.1 = NZ_JJPI01000090.1 Primary Assembly 16646 na scaffold139_1_size2012-refined unplaced-scaffold na na JJPI01000091.1 = NZ_JJPI01000091.1 Primary Assembly 2012 na scaffold58_1_size24615-refined unplaced-scaffold na na JJPI01000092.1 = NZ_JJPI01000092.1 Primary Assembly 24615 na scaffold122_1_size3516-refined unplaced-scaffold na na JJPI01000093.1 = NZ_JJPI01000093.1 Primary Assembly 3516 na scaffold77_1_size17110-refined unplaced-scaffold na na JJPI01000094.1 = NZ_JJPI01000094.1 Primary Assembly 17110 na scaffold34_1_size41647-refined unplaced-scaffold na na JJPI01000095.1 = NZ_JJPI01000095.1 Primary Assembly 41548 na scaffold111_1_size9138-refined unplaced-scaffold na na JJPI01000096.1 = NZ_JJPI01000096.1 Primary Assembly 8938 na scaffold127_1_size3041-refined unplaced-scaffold na na JJPI01000097.1 = NZ_JJPI01000097.1 Primary Assembly 3041 na scaffold36_1_size38596-refined unplaced-scaffold na na JJPI01000098.1 = NZ_JJPI01000098.1 Primary Assembly 38396 na scaffold32_1_size42063-refined unplaced-scaffold na na JJPI01000099.1 = NZ_JJPI01000099.1 Primary Assembly 41963 na scaffold83_1_size15167-refined unplaced-scaffold na na JJPI01000100.1 = NZ_JJPI01000100.1 Primary Assembly 15167 na scaffold89_1_size13393-refined unplaced-scaffold na na JJPI01000101.1 = NZ_JJPI01000101.1 Primary Assembly 13393 na scaffold126_1_size3068-refined unplaced-scaffold na na JJPI01000102.1 = NZ_JJPI01000102.1 Primary Assembly 3068 na scaffold101_1_size7731-refined unplaced-scaffold na na JJPI01000103.1 = NZ_JJPI01000103.1 Primary Assembly 7731 na scaffold71_1_size19385-refined unplaced-scaffold na na JJPI01000104.1 = NZ_JJPI01000104.1 Primary Assembly 19385 na scaffold55_1_size25573-refined unplaced-scaffold na na JJPI01000105.1 = NZ_JJPI01000105.1 Primary Assembly 25573 na scaffold84_1_size14564-refined unplaced-scaffold na na JJPI01000106.1 = NZ_JJPI01000106.1 Primary Assembly 14564 na scaffold135_1_size2381-refined unplaced-scaffold na na JJPI01000107.1 = NZ_JJPI01000107.1 Primary Assembly 2381 na scaffold61_1_size23338-refined unplaced-scaffold na na JJPI01000108.1 = NZ_JJPI01000108.1 Primary Assembly 23338 na scaffold96_1_size10206-refined unplaced-scaffold na na JJPI01000109.1 = NZ_JJPI01000109.1 Primary Assembly 10206 na scaffold94_1_size11282-refined unplaced-scaffold na na JJPI01000110.1 = NZ_JJPI01000110.1 Primary Assembly 11283 na scaffold35_1_size37484-refined unplaced-scaffold na na JJPI01000111.1 = NZ_JJPI01000111.1 Primary Assembly 37484 na scaffold100_1_size8413-refined unplaced-scaffold na na JJPI01000112.1 = NZ_JJPI01000112.1 Primary Assembly 8413 na scaffold56_1_size25560-refined unplaced-scaffold na na JJPI01000113.1 = NZ_JJPI01000113.1 Primary Assembly 25032 na scaffold104_1_size7191-refined unplaced-scaffold na na JJPI01000114.1 = NZ_JJPI01000114.1 Primary Assembly 7191 na scaffold120_1_size3881-refined unplaced-scaffold na na JJPI01000115.1 = NZ_JJPI01000115.1 Primary Assembly 3881 na scaffold153_1_size769-refined unplaced-scaffold na na JJPI01000116.1 = NZ_JJPI01000116.1 Primary Assembly 769 na scaffold42_1_size32691-refined unplaced-scaffold na na JJPI01000117.1 = NZ_JJPI01000117.1 Primary Assembly 32591 na scaffold24_1_size48865-refined unplaced-scaffold na na JJPI01000118.1 = NZ_JJPI01000118.1 Primary Assembly 48850 na scaffold70_1_size20547-refined unplaced-scaffold na na JJPI01000119.1 = NZ_JJPI01000119.1 Primary Assembly 20547 na scaffold134_1_size2738-refined unplaced-scaffold na na JJPI01000120.1 = NZ_JJPI01000120.1 Primary Assembly 2738 na scaffold110_1_size6327-refined unplaced-scaffold na na JJPI01000121.1 = NZ_JJPI01000121.1 Primary Assembly 6327 na scaffold38_1_size36185-refined unplaced-scaffold na na JJPI01000122.1 = NZ_JJPI01000122.1 Primary Assembly 35985 na scaffold106_1_size6633-refined unplaced-scaffold na na JJPI01000123.1 = NZ_JJPI01000123.1 Primary Assembly 6633 na scaffold17_1_size63529-refined unplaced-scaffold na na JJPI01000124.1 = NZ_JJPI01000124.1 Primary Assembly 63529 na scaffold78_1_size17075-refined unplaced-scaffold na na JJPI01000125.1 = NZ_JJPI01000125.1 Primary Assembly 16935 na scaffold138_1_size2066-refined unplaced-scaffold na na JJPI01000126.1 = NZ_JJPI01000126.1 Primary Assembly 2066 na scaffold66_1_size21686-refined unplaced-scaffold na na JJPI01000127.1 = NZ_JJPI01000127.1 Primary Assembly 21586 na scaffold49_1_size29187-refined unplaced-scaffold na na JJPI01000128.1 = NZ_JJPI01000128.1 Primary Assembly 29012 na scaffold129_1_size2960-refined unplaced-scaffold na na JJPI01000129.1 = NZ_JJPI01000129.1 Primary Assembly 2960 na scaffold40_1_size34064-refined unplaced-scaffold na na JJPI01000130.1 = NZ_JJPI01000130.1 Primary Assembly 33986 na scaffold91_1_size13664-refined unplaced-scaffold na na JJPI01000131.1 = NZ_JJPI01000131.1 Primary Assembly 13664 na scaffold60_1_size23992-refined unplaced-scaffold na na JJPI01000132.1 = NZ_JJPI01000132.1 Primary Assembly 23992 na scaffold30_1_size42806-refined unplaced-scaffold na na JJPI01000133.1 = NZ_JJPI01000133.1 Primary Assembly 42646 na scaffold92_1_size21217-refined unplaced-scaffold na na JJPI01000134.1 = NZ_JJPI01000134.1 Primary Assembly 21150 na scaffold27_1_size44714-refined unplaced-scaffold na na JJPI01000135.1 = NZ_JJPI01000135.1 Primary Assembly 44614 na scaffold29_1_size79730-refined unplaced-scaffold na na JJPI01000136.1 = NZ_JJPI01000136.1 Primary Assembly 79345 na scaffold102_1_size7522-refined unplaced-scaffold na na JJPI01000137.1 = NZ_JJPI01000137.1 Primary Assembly 7522 na scaffold39_1_size35012-refined unplaced-scaffold na na JJPI01000138.1 = NZ_JJPI01000138.1 Primary Assembly 35012 na scaffold148_1_size1084-refined unplaced-scaffold na na JJPI01000139.1 = NZ_JJPI01000139.1 Primary Assembly 1084 na scaffold98_1_size14466-refined unplaced-scaffold na na JJPI01000140.1 = NZ_JJPI01000140.1 Primary Assembly 14384 na scaffold3_1_size217662-refined unplaced-scaffold na na JJPI01000141.1 = NZ_JJPI01000141.1 Primary Assembly 216604 na scaffold80_1_size15761-refined unplaced-scaffold na na JJPI01000142.1 = NZ_JJPI01000142.1 Primary Assembly 15761 na scaffold152_1_size782-refined unplaced-scaffold na na JJPI01000143.1 = NZ_JJPI01000143.1 Primary Assembly 782 na scaffold21_1_size54282-refined unplaced-scaffold na na JJPI01000144.1 = NZ_JJPI01000144.1 Primary Assembly 54282 na scaffold14_1_size68371-refined unplaced-scaffold na na JJPI01000145.1 = NZ_JJPI01000145.1 Primary Assembly 68286 na scaffold93_1_size11606-refined unplaced-scaffold na na JJPI01000146.1 = NZ_JJPI01000146.1 Primary Assembly 11606 na scaffold31_1_size42465-refined unplaced-scaffold na na JJPI01000147.1 = NZ_JJPI01000147.1 Primary Assembly 42383 na scaffold137_1_size2266-refined unplaced-scaffold na na JJPI01000148.1 = NZ_JJPI01000148.1 Primary Assembly 2266 na scaffold11_1_size70636-refined unplaced-scaffold na na JJPI01000149.1 = NZ_JJPI01000149.1 Primary Assembly 70036 na scaffold141_1_size1565-refined unplaced-scaffold na na JJPI01000150.1 = NZ_JJPI01000150.1 Primary Assembly 1565 na scaffold131_1_size2899-refined unplaced-scaffold na na JJPI01000151.1 = NZ_JJPI01000151.1 Primary Assembly 2805 na scaffold52_1_size27755-refined unplaced-scaffold na na JJPI01000152.1 = NZ_JJPI01000152.1 Primary Assembly 27755 na scaffold69_1_size21095-refined unplaced-scaffold na na JJPI01000153.1 = NZ_JJPI01000153.1 Primary Assembly 21095 na scaffold144_1_size1231-refined unplaced-scaffold na na JJPI01000154.1 = NZ_JJPI01000154.1 Primary Assembly 1231 na scaffold81_1_size15584-refined unplaced-scaffold na na JJPI01000155.1 = NZ_JJPI01000155.1 Primary Assembly 15410 na scaffold86_1_size14263-refined unplaced-scaffold na na JJPI01000156.1 = NZ_JJPI01000156.1 Primary Assembly 14263 na