hub GCF_028858775.2 genome assembly
shortLabel chimpanzee (v2 AG18354 primary hap 2024 refseq)
longLabel chimpanzee (v2 AG18354 primary hap 2024 refseq)/Pan troglodytes/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri genome assembly
useOneFile on
email hclawson@ucsc.edu
descriptionUrl html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.description.html

genome GCF_028858775.2
taxId 9598
groups groups.txt
description chimpanzee (v2 AG18354 primary hap 2024 refseq)
twoBitPath GCF_028858775.2.2bit
twoBitBptUrl GCF_028858775.2.2bit.bpt
chromSizes GCF_028858775.2.chrom.sizes.txt
chromAliasBb GCF_028858775.2.chromAlias.bb
chromAuthority ucsc
organism NHGRI_mPanTro3-v2.0_pri Jan. 2024
defaultPos NC_072398.2:77099816-77109816
scientificName Pan troglodytes
htmlPath html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/028/858/775/GCF_028858775.2
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/028/858/775/GCF_028858775.2
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/028/858/775/GCF_028858775.2
liftOver.hg38 liftOver/GCF_028858775.2ToHg38.over.chain.gz
liftOver.panTro6 liftOver/GCF_028858775.2ToPanTro6.over.chain.gz

track assembly
longLabel Assembly
shortLabel Assembly
visibility hide
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.assembly.bb
type bigBed 6
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.assembly
searchIndex name
searchTrix ixIxx/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility dense
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.gc5Base.bw
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.tanDups

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.rmsk.bb
xrefDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.repeatMasker

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility hide
group varRep
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.rModel.bb
xrefDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.rModel.align.bb
maxWindowToDraw 5000000
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.simpleRepeat.bb
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI RefSeq GCF_028858775.2-RS_2024_02 (2024-03-14)
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        shortLabel RefSeq All
        type bigGenePred
        urls name2="https://www.ncbi.nlm.nih.gov/gene/$D/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqCurated
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Curated
        longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
        type bigGenePred
        urls name2="https://www.ncbi.nlm.nih.gov/gene/$D/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeqCurated.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeqCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 2

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        urls name2="https://www.ncbi.nlm.nih.gov/gene/$D/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility dense
type bigBed 4 +
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.windowMasker.bb
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility hide
type bigBed 3
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.allGaps.bb
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.augustus.bb
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.xenoRefGene.ix
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.xenoRefGene

track GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain alignments to target sequence: GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri
subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment
subGroup2 species Assembly s000=panTro6 s001=hg38
subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=chainType dimensionY=species
sortOrder species=+ view=+ chainType=+
configurable on
html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet

    track GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain
    shortLabel Chains
    view chain
    visibility dense
    parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

    track GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen
    shortLabel Syntenic
    view synten
    visibility hide
    parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

    track GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest
    shortLabel Reciprocal best
    view rbest
    visibility hide
    parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

    track GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver
    shortLabel Lift over
    view liftover
    visibility hide
    parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

        track chainPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain on
        subGroups view=chain species=s000 chainType=c00
        shortLabel Chimp/panTro6 Chain
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigChain panTro6
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainPanTro6.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainPanTro6Link.bb
        otherDb panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track chainSynPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s000 chainType=c01
        shortLabel Chimp/panTro6 synChain
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigChain panTro6
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynPanTro6.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynPanTro6Link.bb
        otherDb panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track chainRBestPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s000 chainType=c02
        shortLabel Chimp/panTro6 rbChain
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigChain panTro6
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestPanTro6.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestPanTro6Link.bb
        otherDb panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track chainLiftOverPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s000 chainType=c03
        shortLabel Chimp/panTro6 loChain
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigChain panTro6
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverPanTro6.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverPanTro6Link.bb
        otherDb panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track chainHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain off
        subGroups view=chain species=s001 chainType=c00
        shortLabel Human/hg38 Chain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainHg38.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainHg38Link.bb
        otherDb hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainSynHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s001 chainType=c01
        shortLabel Human/hg38 synChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynHg38.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynHg38Link.bb
        otherDb hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainRBestHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s001 chainType=c02
        shortLabel Human/hg38 rbChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestHg38.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestHg38Link.bb
        otherDb hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainLiftOverHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s001 chainType=c03
        shortLabel Human/hg38 loChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverHg38.bb
        linkDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverHg38Link.bb
        otherDb hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

    track GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
    shortLabel Nets
    view align
    visibility hide
    parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet

        track netPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet off
        subGroups view=align species=s000 chainType=c04
        shortLabel Chimp/panTro6 mafNet
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.panTro6.net.bb
        summary bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.panTro6.net.summary.bb
        speciesOrder panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track synNetPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet off
        subGroups view=align species=s000 chainType=c05
        shortLabel Chimp/panTro6 synNet
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.panTro6.synNet.bb
        summary bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.panTro6.synNet.summary.bb
        speciesOrder panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track rbestNetPanTro6
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet off
        subGroups view=align species=s000 chainType=c06
        shortLabel Chimp/panTro6 rbestNet
        longLabel Chimp/panTro6/panTro6 (Jan. 2018) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.panTro6.rbestNet.bb
        summary bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.panTro6.rbestNet.summary.bb
        speciesOrder panTro6
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 5.319

        track netHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet off
        subGroups view=align species=s001 chainType=c04
        shortLabel Human/hg38 mafNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.net.bb
        summary bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.net.summary.bb
        speciesOrder hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track synNetHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet off
        subGroups view=align species=s001 chainType=c05
        shortLabel Human/hg38 synNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.synNet.bb
        summary bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track rbestNetHg38
        parent GCF_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet off
        subGroups view=align species=s001 chainType=c06
        shortLabel Human/hg38 rbestNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.rbestNet.bb
        summary bbi/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.rbestNet.summary.bb
        speciesOrder hg38
        html html/GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893