0 nestedRepeats,237 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refGene,301 refSeqComposite,1269 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,421 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 013 gap,150 1 HLTOGAannotvHg38v1,239 augustusGene,310 chainHg38,385 chainHg38,516 chainHg38,706 chainHg38,1105 chainMm10,385 chainMm10,516 chainMm10,706 chainMm10,1105 chainMm39,385 chainMm39,516 chainMm39,706 chainMm39,1105 chainNetHg38,388 chainNetHg38,519 chainNetHg38,709 chainNetHg38,1108 chainNetMm10,387 chainNetMm10,518 chainNetMm10,708 chainNetMm10,1107 chainNetMm39,388 chainNetMm39,519 chainNetMm39,709 chainNetMm39,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 gap,149 genscan,227 mrna,505 netHg38,385 netHg38,516 netHg38,706 netHg38,1105 netMm10,385 netMm10,516 netMm10,706 netMm10,1105 netMm39,385 netMm39,516 netMm39,706 netMm39,1105 refGene,425 refSeqComposite,1812 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,384 10 uniprot,1928 100 augustusGene,134 chainHg38,1073 chainMm10,1073 chainMm39,1073 chainNetHg38,1076 chainNetMm10,1075 chainNetMm39,1076 gap,135 microsat,70 nestedRepeats,230 netHg38,1073 netMm10,1073 netMm39,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainHg38,745 chainMm10,745 chainMm39,745 chainNetHg38,748 chainNetMm10,747 chainNetMm39,748 nestedRepeats,238 netHg38,745 netMm10,745 netMm39,745 1000-2000 augustusGene,161 1000000 uniprot,1824 103-7 chainHg38,1106 chainMm10,1106 chainMm39,1106 chainNetHg38,1109 chainNetMm10,1108 chainNetMm39,1109 netHg38,1106 netMm10,1106 netMm39,1106 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainHg38,702 chainHg38,709 chainMm10,702 chainMm10,709 chainMm39,702 chainMm39,709 chainNetHg38,705 chainNetHg38,712 chainNetMm10,704 chainNetMm10,711 chainNetMm39,705 chainNetMm39,712 netHg38,702 netHg38,709 netMm10,702 netMm10,709 netMm39,702 netMm39,709 111 chainHg38,704 chainHg38,710 chainMm10,704 chainMm10,710 chainMm39,704 chainMm39,710 chainNetHg38,707 chainNetHg38,713 chainNetMm10,706 chainNetMm10,712 chainNetMm39,707 chainNetMm39,713 netHg38,704 netHg38,710 netMm10,704 netMm10,710 netMm39,704 netMm39,710 11484-9 chainHg38,1075 chainMm10,1075 chainMm39,1075 chainNetHg38,1078 chainNetMm10,1077 chainNetMm39,1078 netHg38,1075 netMm10,1075 netMm39,1075 115-26 chainHg38,1037 chainMm10,1037 chainMm39,1037 chainNetHg38,1040 chainNetMm10,1039 chainNetMm39,1040 netHg38,1037 netMm10,1037 netMm39,1037 117900 chainHg38,726 chainHg38,738 chainMm10,726 chainMm10,738 chainMm39,726 chainMm39,738 chainNetHg38,729 chainNetHg38,741 chainNetMm10,728 chainNetMm10,740 chainNetMm39,729 chainNetMm39,741 netHg38,726 netHg38,738 netMm10,726 netMm10,738 netMm39,726 netMm39,738 118300 chainHg38,750 chainMm10,750 chainMm39,750 chainNetHg38,753 chainNetMm10,752 chainNetMm39,753 netHg38,750 netMm10,750 netMm39,750 11928468 chainHg38,1039 chainMm10,1039 chainMm39,1039 chainNetHg38,1042 chainNetMm10,1041 chainNetMm39,1042 netHg38,1039 netMm10,1039 netMm39,1039 11932250 mrna,529 refGene,355 refSeqComposite,1742 xenoRefGene,314 12 mrna,525 refGene,351 refSeqComposite,1738 xenoRefGene,310 12111 chainHg38,712 chainMm10,712 chainMm39,712 chainNetHg38,715 chainNetMm10,714 chainNetMm39,715 netHg38,712 netMm10,712 netMm39,712 12529312 chainHg38,1108 chainMm10,1108 chainMm39,1108 chainNetHg38,1111 chainNetMm10,1110 chainNetMm39,1111 netHg38,1108 netMm10,1108 netMm39,1108 127-163 genscan,206 13 chainHg38,1104 chainMm10,1104 chainMm39,1104 chainNetHg38,1107 chainNetMm10,1106 chainNetMm39,1107 netHg38,1104 netMm10,1104 netMm39,1104 1300 chainHg38,746 chainMm10,746 chainMm39,746 chainNetHg38,749 chainNetMm10,748 chainNetMm39,749 netHg38,746 netMm10,746 netMm39,746 134-41 windowmaskerSdust,112 14500911 chainHg38,1077 chainMm10,1077 chainMm39,1077 chainNetHg38,1080 chainNetMm10,1079 chainNetMm39,1080 netHg38,1077 netMm10,1077 netMm39,1077 14534192 augustusGene,340 14681350 mrna,511 15 microsat,30 microsat,79 microsat,130 refGene,273 refSeqComposite,1241 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 15108278 uniprot,2051 152111 chainHg38,715 chainMm10,715 chainMm39,715 chainNetHg38,718 chainNetMm10,717 chainNetMm39,718 netHg38,715 netMm10,715 netMm39,715 15608248 refGene,431 refSeqComposite,1818 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 18218656 augustusGene,315 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainHg38,419 chainHg38,424 chainHg38,707 chainMm10,419 chainMm10,424 chainMm10,707 chainMm39,419 chainMm39,424 chainMm39,707 chainNetHg38,422 chainNetHg38,427 chainNetHg38,710 chainNetMm10,421 chainNetMm10,426 chainNetMm10,709 chainNetMm39,422 chainNetMm39,427 chainNetMm39,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netHg38,419 netHg38,424 netHg38,707 netMm10,419 netMm10,424 netMm10,707 netMm39,419 netMm39,424 netMm39,707 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 2.0 HLTOGAannotvHg38v1,103 20 chainHg38,1074 chainMm10,1074 chainMm39,1074 chainNetHg38,1077 chainNetMm10,1076 chainNetMm39,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netHg38,1074 netMm10,1074 netMm39,1074 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainHg38,1036 chainMm10,1036 chainMm39,1036 chainNetHg38,1039 chainNetMm10,1038 chainNetMm39,1039 mrna,523 netHg38,1036 netMm10,1036 netMm39,1036 refGene,349 refSeqComposite,1736 xenoRefGene,308 2003 augustusGene,333 chainHg38,1070 chainHg38,1102 chainMm10,1070 chainMm10,1102 chainMm39,1070 chainMm39,1102 chainNetHg38,1073 chainNetHg38,1105 chainNetMm10,1072 chainNetMm10,1104 chainNetMm39,1073 chainNetMm39,1105 netHg38,1070 netHg38,1102 netMm10,1070 netMm10,1102 netMm39,1070 netMm39,1102 2004 mrna,503 uniprot,2045 2005 refGene,423 refSeqComposite,1810 xenoRefGene,382 2006 windowmaskerSdust,107 2007 chainHg38,1009 chainMm10,1009 chainMm39,1009 chainNetHg38,1012 chainNetMm10,1011 chainNetMm39,1012 netHg38,1009 netMm10,1009 netMm39,1009 2008 augustusGene,308 2011 chainMm10,5 chainMm10,67 chainMm10,301 chainNetMm10,5 chainNetMm10,69 chainNetMm10,303 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netMm10,5 netMm10,67 netMm10,301 2012 uniprot,2000 2013 chainHg38,5 chainHg38,67 chainHg38,301 chainNetHg38,6 chainNetHg38,70 chainNetHg38,304 chainNetHg38Viewchain,4 chainNetHg38Viewnet,4 mrna,478 netHg38,5 netHg38,67 netHg38,301 2014 refGene,390 refSeqComposite,1777 xenoRefGene,349 2019 gap,16 gold,18 2020 chainMm39,5 chainMm39,67 chainMm39,301 chainNetMm39,6 chainNetMm39,70 chainNetMm39,304 chainNetMm39Viewchain,4 chainNetMm39Viewnet,4 netMm39,5 netMm39,67 netMm39,301 2022_03 uniprot,1911 2023 HLTOGAannotvHg38v1,365 uniprot,1191 2111 chainHg38,711 chainMm10,711 chainMm39,711 chainNetHg38,714 chainNetMm10,713 chainNetMm39,714 netHg38,711 netMm10,711 netMm39,711 217900 chainHg38,727 chainHg38,739 chainMm10,727 chainMm10,739 chainMm39,727 chainMm39,739 chainNetHg38,730 chainNetHg38,742 chainNetMm10,729 chainNetMm10,741 chainNetMm39,730 chainNetMm39,742 netHg38,727 netHg38,739 netMm10,727 netMm10,739 netMm39,727 netMm39,739 218300 chainHg38,751 chainMm10,751 chainMm39,751 chainNetHg38,754 chainNetMm10,753 chainNetMm39,754 netHg38,751 netMm10,751 netMm39,751 22 windowmaskerSdust,110 220 gap,131 22102590 uniprot,2007 22900 chainHg38,724 chainHg38,736 chainMm10,724 chainMm10,736 chainMm39,724 chainMm39,736 chainNetHg38,727 chainNetHg38,739 chainNetMm10,726 chainNetMm10,738 chainNetMm39,727 chainNetMm39,739 netHg38,724 netHg38,736 netMm10,724 netMm10,736 netMm39,724 netMm39,736 23 uniprot,2047 23193287 mrna,485 23300 chainHg38,748 chainMm10,748 chainMm39,748 chainNetHg38,751 chainNetMm10,750 chainNetMm39,751 netHg38,748 netMm10,748 netMm39,748 24 augustusGene,311 24259432 refGene,397 refSeqComposite,1784 xenoRefGene,356 25 genscan,225 xenoRefGene,268 252111 chainHg38,716 chainMm10,716 chainMm39,716 chainNetHg38,719 chainNetMm10,718 chainNetMm39,719 netHg38,716 netMm10,716 netMm39,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 28 HLTOGAannotvHg38v1,367 2900 chainHg38,723 chainHg38,735 chainMm10,723 chainMm10,735 chainMm39,723 chainMm39,735 chainNetHg38,726 chainNetHg38,738 chainNetMm10,725 chainNetMm10,737 chainNetMm39,726 chainNetMm39,738 netHg38,723 netHg38,735 netMm10,723 netMm10,735 netMm39,723 netMm39,735 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainHg38,431 chainHg38,708 chainMm10,431 chainMm10,708 chainMm39,431 chainMm39,708 chainNetHg38,434 chainNetHg38,711 chainNetMm10,433 chainNetMm10,710 chainNetMm39,434 chainNetMm39,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netHg38,431 netHg38,708 netMm10,431 netMm10,708 netMm39,431 netMm39,708 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainHg38,1072 chainMm10,1072 chainMm39,1072 chainNetHg38,1075 chainNetMm10,1074 chainNetMm39,1075 netHg38,1072 netMm10,1072 netMm39,1072 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainHg38,680 chainMm10,680 chainMm39,680 chainNetHg38,683 chainNetMm10,682 chainNetMm39,683 netHg38,680 netMm10,680 netMm39,680 317900 chainHg38,728 chainHg38,740 chainMm10,728 chainMm10,740 chainMm39,728 chainMm39,740 chainNetHg38,731 chainNetHg38,743 chainNetMm10,730 chainNetMm10,742 chainNetMm39,731 chainNetMm39,743 netHg38,728 netHg38,740 netMm10,728 netMm10,740 netMm39,728 netMm39,740 318300 chainHg38,752 chainMm10,752 chainMm39,752 chainNetHg38,755 chainNetMm10,754 chainNetMm39,755 netHg38,752 netMm10,752 netMm39,752 32 mrna,506 32111 chainHg38,713 chainMm10,713 chainMm39,713 chainNetHg38,716 chainNetMm10,715 chainNetMm39,716 netHg38,713 netMm10,713 netMm39,713 33 refGene,426 refSeqComposite,1813 xenoRefGene,385 3300 chainHg38,747 chainMm10,747 chainMm39,747 chainNetHg38,750 chainNetMm10,749 chainNetMm39,750 netHg38,747 netMm10,747 netMm39,747 344 gold,153 34990190 refSeqComposite,1555 350 chainHg38,718 chainHg38,730 chainMm10,718 chainMm10,730 chainMm39,718 chainMm39,730 chainNetHg38,721 chainNetHg38,733 chainNetMm10,720 chainNetMm10,732 chainNetMm39,721 chainNetMm39,733 netHg38,718 netHg38,730 netMm10,718 netMm10,730 netMm39,718 netMm39,730 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1557 37104600 HLTOGAannotvHg38v1,372 380 HLTOGAannotvHg38v1,368 4 mrna,526 refGene,352 refSeqComposite,1739 xenoRefGene,311 40 uniprot,2002 41 mrna,480 418-420 nestedRepeats,359 rmsk,382 42 refGene,392 refSeqComposite,1779 xenoRefGene,351 425 chainHg38,719 chainHg38,731 chainMm10,719 chainMm10,731 chainMm39,719 chainMm39,731 chainNetHg38,722 chainNetHg38,734 chainNetMm10,721 chainNetMm10,733 chainNetMm39,722 chainNetMm39,734 netHg38,719 netHg38,731 netMm10,719 netMm10,731 netMm39,719 netMm39,731 447 gap,151 45 refSeqComposite,941 450 chainHg38,720 chainHg38,732 chainMm10,720 chainMm10,732 chainMm39,720 chainMm39,732 chainNetHg38,723 chainNetHg38,735 chainNetMm10,722 chainNetMm10,734 chainNetMm39,723 chainNetMm39,735 netHg38,720 netHg38,732 netMm10,720 netMm10,732 netMm39,720 netMm39,732 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 HLTOGAannotvHg38v1,167 HLTOGAannotvHg38v1,214 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 573-80 microsat,133 simpleRepeat,93 57900 chainHg38,725 chainHg38,737 chainMm10,725 chainMm10,737 chainMm39,725 chainMm39,737 chainNetHg38,728 chainNetHg38,740 chainNetMm10,727 chainNetMm10,739 chainNetMm39,728 chainNetMm39,740 netHg38,725 netHg38,737 netMm10,725 netMm10,737 netMm39,725 netMm39,737 58300 chainHg38,749 chainMm10,749 chainMm39,749 chainNetHg38,752 chainNetMm10,751 chainNetMm39,752 netHg38,749 netMm10,749 netMm39,749 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 gold,152 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainHg38,721 chainHg38,733 chainMm10,721 chainMm10,733 chainMm39,721 chainMm39,733 chainNetHg38,724 chainNetHg38,736 chainNetMm10,723 chainNetMm10,735 chainNetMm39,724 chainNetMm39,736 netHg38,721 netHg38,733 netMm10,721 netMm10,733 netMm39,721 netMm39,733 637-44 augustusGene,313 639 gap,145 656-64 mrna,527 refGene,353 refSeqComposite,1740 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 6643 HLTOGAannotvHg38v1,369 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 gap,148 72111 chainHg38,714 chainMm10,714 chainMm39,714 chainNetHg38,717 chainNetMm10,716 chainNetMm39,717 netHg38,714 netMm10,714 netMm39,714 743-8 nestedRepeats,414 rmsk,437 750 chainHg38,742 chainMm10,742 chainMm39,742 chainNetHg38,745 chainNetMm10,744 chainNetMm39,745 netHg38,742 netMm10,742 netMm39,742 78-94 genscan,228 80 HLTOGAannotvHg38v1,145 HLTOGAannotvHg38v1,179 HLTOGAannotvHg38v1,226 HLTOGAannotvHg38v1,245 825 chainHg38,743 chainMm10,743 chainMm39,743 chainNetHg38,746 chainNetMm10,745 chainNetMm39,746 netHg38,743 netMm10,743 netMm39,743 850 chainHg38,744 chainMm10,744 chainMm39,744 chainNetHg38,747 chainNetMm10,746 chainNetMm39,747 netHg38,744 netMm10,744 netMm39,744 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainHg38,722 chainHg38,734 chainMm10,722 chainMm10,734 chainMm39,722 chainMm39,734 chainNetHg38,725 chainNetHg38,737 chainNetMm10,724 chainNetMm10,736 chainNetMm39,725 chainNetMm39,737 netHg38,722 netHg38,734 netMm10,722 netMm10,734 netMm39,722 netMm39,734 9149143 genscan,230 93 uniprot,1483 96 mrna,428 refGene,308 refSeqComposite,1276 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a HLTOGAannotvHg38v1,25 HLTOGAannotvHg38v1,46 HLTOGAannotvHg38v1,50 HLTOGAannotvHg38v1,62 HLTOGAannotvHg38v1,74 HLTOGAannotvHg38v1,116 HLTOGAannotvHg38v1,138 HLTOGAannotvHg38v1,268 HLTOGAannotvHg38v1,291 HLTOGAannotvHg38v1,296 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainHg38,75 chainHg38,144 chainHg38,196 chainHg38,451 chainHg38,461 chainHg38,465 chainHg38,532 chainHg38,549 chainHg38,552 chainHg38,618 chainHg38,623 chainHg38,628 chainHg38,632 chainHg38,643 chainHg38,675 chainHg38,794 chainHg38,808 chainHg38,814 chainHg38,820 chainHg38,824 chainHg38,827 chainHg38,855 chainHg38,1045 chainHg38,1069 chainHg38,1085 chainMm10,75 chainMm10,144 chainMm10,196 chainMm10,451 chainMm10,461 chainMm10,465 chainMm10,532 chainMm10,549 chainMm10,552 chainMm10,618 chainMm10,623 chainMm10,628 chainMm10,632 chainMm10,643 chainMm10,675 chainMm10,794 chainMm10,808 chainMm10,814 chainMm10,820 chainMm10,824 chainMm10,827 chainMm10,855 chainMm10,1045 chainMm10,1069 chainMm10,1085 chainMm39,75 chainMm39,144 chainMm39,196 chainMm39,451 chainMm39,461 chainMm39,465 chainMm39,532 chainMm39,549 chainMm39,552 chainMm39,618 chainMm39,623 chainMm39,628 chainMm39,632 chainMm39,643 chainMm39,675 chainMm39,794 chainMm39,808 chainMm39,814 chainMm39,820 chainMm39,824 chainMm39,827 chainMm39,855 chainMm39,1045 chainMm39,1069 chainMm39,1085 chainNetHg38,78 chainNetHg38,147 chainNetHg38,199 chainNetHg38,454 chainNetHg38,464 chainNetHg38,468 chainNetHg38,535 chainNetHg38,552 chainNetHg38,555 chainNetHg38,621 chainNetHg38,626 chainNetHg38,631 chainNetHg38,635 chainNetHg38,646 chainNetHg38,678 chainNetHg38,797 chainNetHg38,811 chainNetHg38,817 chainNetHg38,823 chainNetHg38,827 chainNetHg38,830 chainNetHg38,858 chainNetHg38,1048 chainNetHg38,1072 chainNetHg38,1088 chainNetMm10,77 chainNetMm10,146 chainNetMm10,198 chainNetMm10,453 chainNetMm10,463 chainNetMm10,467 chainNetMm10,534 chainNetMm10,551 chainNetMm10,554 chainNetMm10,620 chainNetMm10,625 chainNetMm10,630 chainNetMm10,634 chainNetMm10,645 chainNetMm10,677 chainNetMm10,796 chainNetMm10,810 chainNetMm10,816 chainNetMm10,822 chainNetMm10,826 chainNetMm10,829 chainNetMm10,857 chainNetMm10,1047 chainNetMm10,1071 chainNetMm10,1087 chainNetMm39,78 chainNetMm39,147 chainNetMm39,199 chainNetMm39,454 chainNetMm39,464 chainNetMm39,468 chainNetMm39,535 chainNetMm39,552 chainNetMm39,555 chainNetMm39,621 chainNetMm39,626 chainNetMm39,631 chainNetMm39,635 chainNetMm39,646 chainNetMm39,678 chainNetMm39,797 chainNetMm39,811 chainNetMm39,817 chainNetMm39,823 chainNetMm39,827 chainNetMm39,830 chainNetMm39,858 chainNetMm39,1048 chainNetMm39,1072 chainNetMm39,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 gap,99 gap,103 gc5BaseBw,44 genscan,102 genscan,132 gold,117 gold,123 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netHg38,75 netHg38,144 netHg38,196 netHg38,451 netHg38,461 netHg38,465 netHg38,532 netHg38,549 netHg38,552 netHg38,618 netHg38,623 netHg38,628 netHg38,632 netHg38,643 netHg38,675 netHg38,794 netHg38,808 netHg38,814 netHg38,820 netHg38,824 netHg38,827 netHg38,855 netHg38,1045 netHg38,1069 netHg38,1085 netMm10,75 netMm10,144 netMm10,196 netMm10,451 netMm10,461 netMm10,465 netMm10,532 netMm10,549 netMm10,552 netMm10,618 netMm10,623 netMm10,628 netMm10,632 netMm10,643 netMm10,675 netMm10,794 netMm10,808 netMm10,814 netMm10,820 netMm10,824 netMm10,827 netMm10,855 netMm10,1045 netMm10,1069 netMm10,1085 netMm39,75 netMm39,144 netMm39,196 netMm39,451 netMm39,461 netMm39,465 netMm39,532 netMm39,549 netMm39,552 netMm39,618 netMm39,623 netMm39,628 netMm39,632 netMm39,643 netMm39,675 netMm39,794 netMm39,808 netMm39,814 netMm39,820 netMm39,824 netMm39,827 netMm39,855 netMm39,1045 netMm39,1069 netMm39,1085 refGene,277 refGene,296 refGene,367 refGene,410 refSeqComposite,147 refSeqComposite,158 refSeqComposite,295 refSeqComposite,310 refSeqComposite,529 refSeqComposite,642 refSeqComposite,790 refSeqComposite,1052 refSeqComposite,1245 refSeqComposite,1264 refSeqComposite,1517 refSeqComposite,1536 refSeqComposite,1562 refSeqComposite,1651 refSeqComposite,1754 refSeqComposite,1797 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainHg38,668 chainMm10,668 chainMm39,668 chainNetHg38,671 chainNetMm10,670 chainNetMm39,671 netHg38,668 netMm10,668 netMm39,668 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainHg38,581 chainMm10,581 chainMm39,581 chainNetHg38,584 chainNetMm10,583 chainNetMm39,584 netHg38,581 netMm10,581 netMm39,581 about HLTOGAannotvHg38v1,301 chainHg38,457 chainHg38,470 chainHg38,844 chainMm10,457 chainMm10,470 chainMm10,844 chainMm39,457 chainMm39,470 chainMm39,844 chainNetHg38,460 chainNetHg38,473 chainNetHg38,847 chainNetMm10,459 chainNetMm10,472 chainNetMm10,846 chainNetMm39,460 chainNetMm39,473 chainNetMm39,847 gap,35 genscan,127 gold,37 microsat,98 mrna,348 netHg38,457 netHg38,470 netHg38,844 netMm10,457 netMm10,470 netMm10,844 netMm39,457 netMm39,470 netMm39,844 refGene,216 refSeqComposite,95 refSeqComposite,850 refSeqComposite,1185 refSeqComposite,1380 refSeqComposite,1459 simpleRepeat,59 xenoRefGene,176 above chainHg38,529 chainHg38,541 chainHg38,561 chainMm10,529 chainMm10,541 chainMm10,561 chainMm39,529 chainMm39,541 chainMm39,561 chainNetHg38,532 chainNetHg38,544 chainNetHg38,564 chainNetMm10,531 chainNetMm10,543 chainNetMm10,563 chainNetMm39,532 chainNetMm39,544 chainNetMm39,564 nestedRepeats,218 netHg38,529 netHg38,541 netHg38,561 netMm10,529 netMm10,541 netMm10,561 netMm39,529 netMm39,541 netMm39,561 uniprot,1525 abundance chainHg38,178 chainMm10,178 chainMm39,178 chainNetHg38,181 chainNetMm10,180 chainNetMm39,181 netHg38,178 netMm10,178 netMm39,178 acad chainHg38,1065 chainMm10,1065 chainMm39,1065 chainNetHg38,1068 chainNetMm10,1067 chainNetMm39,1068 netHg38,1065 netMm10,1065 netMm39,1065 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 refSeqComposite,1286 refSeqComposite,1350 refSeqComposite,1440 refSeqComposite,1649 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1295 refSeqComposite,1318 accesses refSeqComposite,1623 accessing refSeqComposite,1381 accession refGene,156 refGene,168 refSeqComposite,777 refSeqComposite,802 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,116 xenoRefGene,128 accessions refSeqComposite,221 refSeqComposite,350 refSeqComposite,492 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 accurately HLTOGAannotvHg38v1,91 acgt chainHg38,667 chainMm10,667 chainMm39,667 chainNetHg38,670 chainNetMm10,669 chainNetMm39,670 netHg38,667 netMm10,667 netMm39,667 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids microsat,126 mrna,476 mrna,501 refGene,388 refGene,421 refSeqComposite,1775 refSeqComposite,1808 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,347 xenoRefGene,380 acronym uniprot,546 added chainHg38,591 chainMm10,591 chainMm39,591 chainNetHg38,594 chainNetMm10,593 chainNetMm39,594 nestedRepeats,147 netHg38,591 netMm10,591 netMm39,591 uniprot,1187 additional HLTOGAannotvHg38v1,299 nestedRepeats,288 rmsk,295 additions refGene,59 refSeqComposite,118 adjust refSeqComposite,740 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainHg38,930 chainHg38,962 chainMm10,930 chainMm10,962 chainMm39,930 chainMm39,962 chainNetHg38,933 chainNetHg38,965 chainNetMm10,932 chainNetMm10,964 chainNetMm39,933 chainNetMm39,965 netHg38,930 netHg38,962 netMm10,930 netMm10,962 netMm39,930 netMm39,962 advise refSeqComposite,77 ae HLTOGAannotvHg38v1,347 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainHg38,85 chainMm10,85 chainMm39,85 chainNetHg38,88 chainNetMm10,87 chainNetMm39,88 netHg38,85 netMm10,85 netMm39,85 after chainHg38,902 chainMm10,902 chainMm39,902 chainNetHg38,905 chainNetMm10,904 chainNetMm39,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netHg38,902 netMm10,902 netMm39,902 uniprot,294 uniprot,1329 again uniprot,629 uniprot,1500 against mrna,341 mrna,389 refGene,260 refSeqComposite,1228 xenoRefGene,220 agarwala windowmaskerSdust,98 agp gap,49 gap,58 gap,65 gold,48 gold,57 gold,64 ahmed HLTOGAannotvHg38v1,348 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al HLTOGAannotvHg38v1,355 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 refGene,379 refSeqComposite,1766 xenoRefGene,338 alejo uniprot,1966 algorithm augustusGene,130 algorithms uniprot,52 align chainHg38,194 chainMm10,194 chainMm39,194 chainNetHg38,197 chainNetMm10,196 chainNetMm39,197 netHg38,194 netMm10,194 netMm39,194 uniprot,1216 alignable chainHg38,22 chainHg38,38 chainMm10,22 chainMm10,38 chainMm39,22 chainMm39,38 chainNetHg38,25 chainNetHg38,41 chainNetMm10,24 chainNetMm10,40 chainNetMm39,25 chainNetMm39,41 netHg38,22 netHg38,38 netMm10,22 netMm10,38 netMm39,22 netMm39,38 aligned chainHg38,584 chainMm10,584 chainMm39,584 chainNetHg38,587 chainNetMm10,586 chainNetMm39,587 mrna,388 mrna,400 netHg38,584 netMm10,584 netMm39,584 refGene,259 refGene,280 refSeqComposite,80 refSeqComposite,189 refSeqComposite,304 refSeqComposite,894 refSeqComposite,1057 refSeqComposite,1227 refSeqComposite,1248 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,219 xenoRefGene,240 aligning chainHg38,133 chainHg38,329 chainHg38,359 chainMm10,133 chainMm10,329 chainMm10,359 chainMm39,133 chainMm39,329 chainMm39,359 chainNetHg38,136 chainNetHg38,332 chainNetHg38,362 chainNetMm10,135 chainNetMm10,331 chainNetMm10,361 chainNetMm39,136 chainNetMm39,332 chainNetMm39,362 netHg38,133 netHg38,329 netHg38,359 netMm10,133 netMm10,329 netMm10,359 netMm39,133 netMm39,329 netMm39,359 uniprot,952 alignment HLTOGAannotvHg38v1,65 chainHg38,257 chainHg38,1012 chainMm10,257 chainMm10,1012 chainMm39,257 chainMm39,1012 chainNetHg38,260 chainNetHg38,1015 chainNetMm10,259 chainNetMm10,1014 chainNetMm39,260 chainNetMm39,1015 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netHg38,8 netHg38,257 netHg38,1012 netMm10,8 netMm10,257 netMm10,1012 netMm39,8 netMm39,257 netMm39,1012 refGene,269 refGene,285 refGene,345 refSeqComposite,193 refSeqComposite,327 refSeqComposite,458 refSeqComposite,1146 refSeqComposite,1237 refSeqComposite,1253 refSeqComposite,1732 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments HLTOGAannotvHg38v1,23 HLTOGAannotvHg38v1,80 HLTOGAannotvHg38v1,313 augustusGene,300 chainHg38,9 chainHg38,63 chainHg38,444 chainHg38,596 chainHg38,608 chainHg38,616 chainHg38,642 chainHg38,760 chainHg38,1032 chainHg38,1097 chainMm10,9 chainMm10,63 chainMm10,444 chainMm10,596 chainMm10,608 chainMm10,616 chainMm10,642 chainMm10,760 chainMm10,1032 chainMm10,1097 chainMm39,9 chainMm39,63 chainMm39,444 chainMm39,596 chainMm39,608 chainMm39,616 chainMm39,642 chainMm39,760 chainMm39,1032 chainMm39,1097 chainNetHg38,12 chainNetHg38,66 chainNetHg38,447 chainNetHg38,599 chainNetHg38,611 chainNetHg38,619 chainNetHg38,645 chainNetHg38,763 chainNetHg38,1035 chainNetHg38,1100 chainNetHg38Viewchain,10 chainNetHg38Viewnet,10 chainNetMm10,11 chainNetMm10,65 chainNetMm10,446 chainNetMm10,598 chainNetMm10,610 chainNetMm10,618 chainNetMm10,644 chainNetMm10,762 chainNetMm10,1034 chainNetMm10,1099 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 chainNetMm39,12 chainNetMm39,66 chainNetMm39,447 chainNetMm39,599 chainNetMm39,611 chainNetMm39,619 chainNetMm39,645 chainNetMm39,763 chainNetMm39,1035 chainNetMm39,1100 chainNetMm39Viewchain,10 chainNetMm39Viewnet,10 mrna,15 mrna,414 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netHg38,63 netHg38,444 netHg38,596 netHg38,608 netHg38,616 netHg38,642 netHg38,760 netHg38,1032 netHg38,1097 netMm10,63 netMm10,444 netMm10,596 netMm10,608 netMm10,616 netMm10,642 netMm10,760 netMm10,1032 netMm10,1097 netMm39,63 netMm39,444 netMm39,596 netMm39,608 netMm39,616 netMm39,642 netMm39,760 netMm39,1032 netMm39,1097 refGene,294 refSeqComposite,267 refSeqComposite,366 refSeqComposite,433 refSeqComposite,435 refSeqComposite,1207 refSeqComposite,1262 refSeqComposite,1419 rmsk,306 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,254 all augustusGene,207 chainHg38,615 chainMm10,615 chainMm39,615 chainNetHg38,618 chainNetMm10,617 chainNetMm39,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 gap,132 mrna,135 mrna,189 mrna,244 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netHg38,615 netMm10,615 netMm39,615 refSeqComposite,33 refSeqComposite,84 refSeqComposite,177 refSeqComposite,182 refSeqComposite,198 refSeqComposite,200 refSeqComposite,214 refSeqComposite,344 refSeqComposite,380 refSeqComposite,585 refSeqComposite,788 refSeqComposite,1405 refSeqComposite,1569 refSeqComposite,1661 refSeqComposite,1666 rmsk,65 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allows augustusGene,168 chainHg38,80 chainMm10,80 chainMm39,80 chainNetHg38,83 chainNetMm10,82 chainNetMm39,83 mrna,334 netHg38,80 netMm10,80 netMm39,80 refGene,187 refSeqComposite,821 xenoRefGene,147 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 alpha refSeqComposite,417 already chainHg38,805 chainMm10,805 chainMm39,805 chainNetHg38,808 chainNetMm10,807 chainNetMm39,808 netHg38,805 netMm10,805 netMm39,805 also HLTOGAannotvHg38v1,190 chainHg38,91 chainMm10,91 chainMm39,91 chainNetHg38,94 chainNetMm10,93 chainNetMm39,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 gap,31 gold,33 mrna,216 mrna,324 mrna,368 netHg38,91 netMm10,91 netMm39,91 refSeqComposite,1125 refSeqComposite,1316 refSeqComposite,1349 refSeqComposite,1581 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter mrna,72 alternating gold,89 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,120 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 ambiguous refSeqComposite,986 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainHg38,151 chainHg38,177 chainHg38,183 chainMm10,151 chainMm10,177 chainMm10,183 chainMm39,151 chainMm39,177 chainMm39,183 chainNetHg38,154 chainNetHg38,180 chainNetHg38,186 chainNetMm10,153 chainNetMm10,179 chainNetMm10,185 chainNetMm39,154 chainNetMm39,180 chainNetMm39,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netHg38,151 netHg38,177 netHg38,183 netMm10,151 netMm10,177 netMm10,183 netMm39,151 netMm39,177 netMm39,183 refGene,181 refGene,268 refGene,381 refSeqComposite,744 refSeqComposite,815 refSeqComposite,1236 refSeqComposite,1768 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analysis refSeqComposite,75 refSeqComposite,1454 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and HLTOGAannotvHg38v1,12 HLTOGAannotvHg38v1,34 HLTOGAannotvHg38v1,61 HLTOGAannotvHg38v1,69 HLTOGAannotvHg38v1,83 HLTOGAannotvHg38v1,86 HLTOGAannotvHg38v1,110 HLTOGAannotvHg38v1,130 HLTOGAannotvHg38v1,153 HLTOGAannotvHg38v1,176 HLTOGAannotvHg38v1,223 HLTOGAannotvHg38v1,310 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainHg38,97 chainHg38,111 chainHg38,225 chainHg38,233 chainHg38,247 chainHg38,285 chainHg38,307 chainHg38,433 chainHg38,587 chainHg38,622 chainHg38,630 chainHg38,771 chainHg38,849 chainHg38,881 chainHg38,892 chainHg38,901 chainHg38,926 chainHg38,941 chainHg38,966 chainHg38,972 chainHg38,978 chainHg38,985 chainHg38,991 chainHg38,1055 chainHg38,1060 chainMm10,97 chainMm10,111 chainMm10,225 chainMm10,233 chainMm10,247 chainMm10,285 chainMm10,307 chainMm10,433 chainMm10,587 chainMm10,622 chainMm10,630 chainMm10,771 chainMm10,849 chainMm10,881 chainMm10,892 chainMm10,901 chainMm10,926 chainMm10,941 chainMm10,966 chainMm10,972 chainMm10,978 chainMm10,985 chainMm10,991 chainMm10,1055 chainMm10,1060 chainMm39,97 chainMm39,111 chainMm39,225 chainMm39,233 chainMm39,247 chainMm39,285 chainMm39,307 chainMm39,433 chainMm39,587 chainMm39,622 chainMm39,630 chainMm39,771 chainMm39,849 chainMm39,881 chainMm39,892 chainMm39,901 chainMm39,926 chainMm39,941 chainMm39,966 chainMm39,972 chainMm39,978 chainMm39,985 chainMm39,991 chainMm39,1055 chainMm39,1060 chainNetHg38,10 chainNetHg38,100 chainNetHg38,114 chainNetHg38,228 chainNetHg38,236 chainNetHg38,250 chainNetHg38,288 chainNetHg38,310 chainNetHg38,436 chainNetHg38,590 chainNetHg38,625 chainNetHg38,633 chainNetHg38,774 chainNetHg38,852 chainNetHg38,884 chainNetHg38,895 chainNetHg38,904 chainNetHg38,929 chainNetHg38,944 chainNetHg38,969 chainNetHg38,975 chainNetHg38,981 chainNetHg38,988 chainNetHg38,994 chainNetHg38,1058 chainNetHg38,1063 chainNetHg38Viewchain,8 chainNetHg38Viewnet,8 chainNetMm10,9 chainNetMm10,99 chainNetMm10,113 chainNetMm10,227 chainNetMm10,235 chainNetMm10,249 chainNetMm10,287 chainNetMm10,309 chainNetMm10,435 chainNetMm10,589 chainNetMm10,624 chainNetMm10,632 chainNetMm10,773 chainNetMm10,851 chainNetMm10,883 chainNetMm10,894 chainNetMm10,903 chainNetMm10,928 chainNetMm10,943 chainNetMm10,968 chainNetMm10,974 chainNetMm10,980 chainNetMm10,987 chainNetMm10,993 chainNetMm10,1057 chainNetMm10,1062 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 chainNetMm39,10 chainNetMm39,100 chainNetMm39,114 chainNetMm39,228 chainNetMm39,236 chainNetMm39,250 chainNetMm39,288 chainNetMm39,310 chainNetMm39,436 chainNetMm39,590 chainNetMm39,625 chainNetMm39,633 chainNetMm39,774 chainNetMm39,852 chainNetMm39,884 chainNetMm39,895 chainNetMm39,904 chainNetMm39,929 chainNetMm39,944 chainNetMm39,969 chainNetMm39,975 chainNetMm39,981 chainNetMm39,988 chainNetMm39,994 chainNetMm39,1058 chainNetMm39,1063 chainNetMm39Viewchain,8 chainNetMm39Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 gap,5 gap,80 gap,102 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netHg38,97 netHg38,111 netHg38,225 netHg38,233 netHg38,247 netHg38,285 netHg38,307 netHg38,433 netHg38,587 netHg38,622 netHg38,630 netHg38,771 netHg38,849 netHg38,881 netHg38,892 netHg38,901 netHg38,926 netHg38,941 netHg38,966 netHg38,972 netHg38,978 netHg38,985 netHg38,991 netHg38,1055 netHg38,1060 netMm10,97 netMm10,111 netMm10,225 netMm10,233 netMm10,247 netMm10,285 netMm10,307 netMm10,433 netMm10,587 netMm10,622 netMm10,630 netMm10,771 netMm10,849 netMm10,881 netMm10,892 netMm10,901 netMm10,926 netMm10,941 netMm10,966 netMm10,972 netMm10,978 netMm10,985 netMm10,991 netMm10,1055 netMm10,1060 netMm39,97 netMm39,111 netMm39,225 netMm39,233 netMm39,247 netMm39,285 netMm39,307 netMm39,433 netMm39,587 netMm39,622 netMm39,630 netMm39,771 netMm39,849 netMm39,881 netMm39,892 netMm39,901 netMm39,926 netMm39,941 netMm39,966 netMm39,972 netMm39,978 netMm39,985 netMm39,991 netMm39,1055 netMm39,1060 refGene,9 refGene,12 refGene,24 refGene,50 refGene,60 refGene,83 refGene,117 refGene,167 refGene,192 refGene,225 refGene,238 refGene,305 refGene,332 refGene,418 refSeqComposite,8 refSeqComposite,21 refSeqComposite,71 refSeqComposite,109 refSeqComposite,119 refSeqComposite,142 refSeqComposite,191 refSeqComposite,202 refSeqComposite,230 refSeqComposite,256 refSeqComposite,264 refSeqComposite,272 refSeqComposite,300 refSeqComposite,364 refSeqComposite,466 refSeqComposite,490 refSeqComposite,571 refSeqComposite,590 refSeqComposite,653 refSeqComposite,663 refSeqComposite,703 refSeqComposite,715 refSeqComposite,801 refSeqComposite,826 refSeqComposite,859 refSeqComposite,879 refSeqComposite,911 refSeqComposite,953 refSeqComposite,969 refSeqComposite,992 refSeqComposite,1007 refSeqComposite,1124 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1174 refSeqComposite,1273 refSeqComposite,1368 refSeqComposite,1470 refSeqComposite,1488 refSeqComposite,1628 refSeqComposite,1669 refSeqComposite,1719 refSeqComposite,1805 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 ucscToINSDC,11 ucscToRefSeq,6 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annot unipOther,2 annotate HLTOGAannotvHg38v1,100 annotated HLTOGAannotvHg38v1,133 refSeqComposite,554 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation HLTOGAannotvHg38v1,31 HLTOGAannotvHg38v1,48 HLTOGAannotvHg38v1,358 chainHg38,296 chainMm10,296 chainMm39,296 chainNetHg38,299 chainNetMm10,298 chainNetMm39,299 netHg38,296 netMm10,296 netMm39,296 refSeqComposite,66 refSeqComposite,664 refSeqComposite,1113 refSeqComposite,1142 refSeqComposite,1188 rmsk,38 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations HLTOGAannotvHg38v1,5 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refGene,4 refGene,226 refSeqComposite,190 refSeqComposite,196 refSeqComposite,204 refSeqComposite,219 refSeqComposite,348 refSeqComposite,382 refSeqComposite,480 refSeqComposite,860 refSeqComposite,1466 refSeqComposite,1498 refSeqComposite,1534 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,186 another refSeqComposite,326 any mrna,259 refSeqComposite,273 refSeqComposite,1351 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 refSeqComposite,1307 refSeqComposite,1361 apply mrna,131 approach uniprot,1531 appropriate refGene,150 refSeqComposite,771 xenoRefGene,110 apr HLTOGAannotvHg38v1,366 genscan,224 mrna,524 refGene,350 refSeqComposite,1737 xenoRefGene,309 apsects gc5BaseBw,51 arbitrary refSeqComposite,937 archive refSeqComposite,1703 uniprot,893 uniprot,1670 uniprot,1908 archives refSeqComposite,1342 refSeqComposite,1687 uniprot,1832 are HLTOGAannotvHg38v1,204 HLTOGAannotvHg38v1,277 augustusGene,27 chainHg38,21 chainHg38,40 chainHg38,53 chainHg38,140 chainHg38,208 chainHg38,219 chainHg38,318 chainHg38,387 chainHg38,408 chainHg38,415 chainHg38,498 chainHg38,687 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,140 chainMm10,208 chainMm10,219 chainMm10,318 chainMm10,387 chainMm10,408 chainMm10,415 chainMm10,498 chainMm10,687 chainMm39,21 chainMm39,40 chainMm39,53 chainMm39,140 chainMm39,208 chainMm39,219 chainMm39,318 chainMm39,387 chainMm39,408 chainMm39,415 chainMm39,498 chainMm39,687 chainNetHg38,24 chainNetHg38,43 chainNetHg38,56 chainNetHg38,143 chainNetHg38,211 chainNetHg38,222 chainNetHg38,321 chainNetHg38,390 chainNetHg38,411 chainNetHg38,418 chainNetHg38,501 chainNetHg38,690 chainNetMm10,23 chainNetMm10,42 chainNetMm10,55 chainNetMm10,142 chainNetMm10,210 chainNetMm10,221 chainNetMm10,320 chainNetMm10,389 chainNetMm10,410 chainNetMm10,417 chainNetMm10,500 chainNetMm10,689 chainNetMm39,24 chainNetMm39,43 chainNetMm39,56 chainNetMm39,143 chainNetMm39,211 chainNetMm39,222 chainNetMm39,321 chainNetMm39,390 chainNetMm39,411 chainNetMm39,418 chainNetMm39,501 chainNetMm39,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 gap,23 gap,68 genscan,25 genscan,160 gold,25 gold,83 gold,100 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netHg38,21 netHg38,40 netHg38,53 netHg38,140 netHg38,208 netHg38,219 netHg38,318 netHg38,387 netHg38,408 netHg38,415 netHg38,498 netHg38,687 netMm10,21 netMm10,40 netMm10,53 netMm10,140 netMm10,208 netMm10,219 netMm10,318 netMm10,387 netMm10,408 netMm10,415 netMm10,498 netMm10,687 netMm39,21 netMm39,40 netMm39,53 netMm39,140 netMm39,208 netMm39,219 netMm39,318 netMm39,387 netMm39,408 netMm39,415 netMm39,498 netMm39,687 refGene,41 refGene,143 refGene,241 refSeqComposite,179 refSeqComposite,232 refSeqComposite,406 refSeqComposite,427 refSeqComposite,764 refSeqComposite,889 refSeqComposite,931 refSeqComposite,995 refSeqComposite,1022 refSeqComposite,1338 refSeqComposite,1372 refSeqComposite,1395 refSeqComposite,1473 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainHg38,939 chainMm10,939 chainMm39,939 chainNetHg38,942 chainNetMm10,941 chainNetMm39,942 nestedRepeats,305 netHg38,939 netMm10,939 netMm39,939 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1101 as HLTOGAannotvHg38v1,9 HLTOGAannotvHg38v1,37 HLTOGAannotvHg38v1,42 HLTOGAannotvHg38v1,141 HLTOGAannotvHg38v1,199 HLTOGAannotvHg38v1,259 augustusGene,77 augustusGene,79 chainHg38,460 chainHg38,500 chainHg38,523 chainHg38,538 chainHg38,798 chainHg38,853 chainHg38,911 chainMm10,460 chainMm10,500 chainMm10,523 chainMm10,538 chainMm10,798 chainMm10,853 chainMm10,911 chainMm39,460 chainMm39,500 chainMm39,523 chainMm39,538 chainMm39,798 chainMm39,853 chainMm39,911 chainNetHg38,463 chainNetHg38,503 chainNetHg38,526 chainNetHg38,541 chainNetHg38,801 chainNetHg38,856 chainNetHg38,914 chainNetMm10,462 chainNetMm10,502 chainNetMm10,525 chainNetMm10,540 chainNetMm10,800 chainNetMm10,855 chainNetMm10,913 chainNetMm39,463 chainNetMm39,503 chainNetMm39,526 chainNetMm39,541 chainNetMm39,801 chainNetMm39,856 chainNetMm39,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 gap,70 genscan,35 genscan,37 microsat,21 nestedRepeats,125 netHg38,460 netHg38,500 netHg38,523 netHg38,538 netHg38,798 netHg38,853 netHg38,911 netMm10,460 netMm10,500 netMm10,523 netMm10,538 netMm10,798 netMm10,853 netMm10,911 netMm39,460 netMm39,500 netMm39,523 netMm39,538 netMm39,798 netMm39,853 netMm39,911 refSeqComposite,413 refSeqComposite,502 refSeqComposite,522 refSeqComposite,535 refSeqComposite,622 refSeqComposite,890 refSeqComposite,1219 refSeqComposite,1400 refSeqComposite,1516 refSeqComposite,1636 rmsk,53 rmsk,55 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refGene,63 refSeqComposite,122 aspect refSeqComposite,705 assemblies augustusGene,196 augustusGene,237 chainHg38,317 chainHg38,579 chainMm10,317 chainMm10,579 chainMm39,317 chainMm39,579 chainNetHg38,320 chainNetHg38,582 chainNetMm10,319 chainNetMm10,581 chainNetMm39,320 chainNetMm39,582 gap,143 netHg38,317 netHg38,579 netMm10,317 netMm10,579 netMm39,317 netMm39,579 refSeqComposite,183 rmsk,107 assembly HLTOGAannotvHg38v1,209 augustusGene,197 chainHg38,149 chainHg38,156 chainHg38,304 chainMm10,149 chainMm10,156 chainMm10,304 chainMm39,149 chainMm39,156 chainMm39,304 chainNetHg38,152 chainNetHg38,159 chainNetHg38,307 chainNetMm10,151 chainNetMm10,158 chainNetMm10,306 chainNetMm39,152 chainNetMm39,159 chainNetMm39,307 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 netHg38,149 netHg38,156 netHg38,304 netMm10,149 netMm10,156 netMm10,304 netMm39,149 netMm39,156 netMm39,304 refSeqComposite,370 refSeqComposite,476 ucscToINSDC,40 ucscToRefSeq,34 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,649 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 refSeqComposite,1396 rmsk,224 simpleRepeat,51 uniprot,787 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,681 astashyn refGene,366 refSeqComposite,1753 xenoRefGene,325 at HLTOGAannotvHg38v1,362 chainHg38,417 chainHg38,793 chainHg38,915 chainHg38,950 chainHg38,955 chainHg38,996 chainMm10,417 chainMm10,793 chainMm10,915 chainMm10,950 chainMm10,955 chainMm10,996 chainMm39,417 chainMm39,793 chainMm39,915 chainMm39,950 chainMm39,955 chainMm39,996 chainNetHg38,420 chainNetHg38,796 chainNetHg38,918 chainNetHg38,953 chainNetHg38,958 chainNetHg38,999 chainNetMm10,419 chainNetMm10,795 chainNetMm10,917 chainNetMm10,952 chainNetMm10,957 chainNetMm10,998 chainNetMm39,420 chainNetMm39,796 chainNetMm39,918 chainNetMm39,953 chainNetMm39,958 chainNetMm39,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netHg38,417 netHg38,793 netHg38,915 netHg38,950 netHg38,955 netHg38,996 netMm10,417 netMm10,793 netMm10,915 netMm10,950 netMm10,955 netMm10,996 netMm39,417 netMm39,793 netMm39,915 netMm39,950 netMm39,955 netMm39,996 refGene,131 refGene,306 refGene,322 refSeqComposite,731 refSeqComposite,1046 refSeqComposite,1150 refSeqComposite,1274 refSeqComposite,1711 rmsk,243 rmsk,267 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 aug gap,15 gold,17 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available HLTOGAannotvHg38v1,329 augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 nestedRepeats,259 nestedRepeats,276 refSeqComposite,180 refSeqComposite,276 refSeqComposite,473 refSeqComposite,565 refSeqComposite,650 refSeqComposite,1339 refSeqComposite,1591 rmsk,73 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aw HLTOGAannotvHg38v1,349 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainHg38,600 chainHg38,607 chainMm10,600 chainMm10,607 chainMm39,600 chainMm39,607 chainNetHg38,603 chainNetHg38,610 chainNetMm10,602 chainNetMm10,609 chainNetMm39,603 chainNetMm39,610 netHg38,600 netHg38,607 netMm10,600 netMm10,607 netMm39,600 netMm39,607 axtchain chainHg38,612 chainHg38,698 chainHg38,946 chainMm10,612 chainMm10,698 chainMm10,946 chainMm39,612 chainMm39,698 chainMm39,946 chainNetHg38,615 chainNetHg38,701 chainNetHg38,949 chainNetMm10,614 chainNetMm10,700 chainNetMm10,948 chainNetMm39,615 chainNetMm39,701 chainNetMm39,949 netHg38,612 netHg38,698 netHg38,946 netMm10,612 netMm10,698 netMm10,946 netMm39,612 netMm39,698 netMm39,946 back chainHg38,592 chainMm10,592 chainMm39,592 chainNetHg38,595 chainNetMm10,594 chainNetMm39,595 netHg38,592 netMm10,592 netMm39,592 baertsch augustusGene,290 chainHg38,984 chainHg38,1042 chainHg38,1088 chainMm10,984 chainMm10,1042 chainMm10,1088 chainMm39,984 chainMm39,1042 chainMm39,1088 chainNetHg38,987 chainNetHg38,1045 chainNetHg38,1091 chainNetMm10,986 chainNetMm10,1044 chainNetMm10,1090 chainNetMm39,987 chainNetMm39,1045 chainNetMm39,1091 netHg38,984 netHg38,1042 netHg38,1088 netMm10,984 netMm10,1042 netMm10,1088 netMm39,984 netMm39,1042 netMm39,1088 bairoch uniprot,2022 band cytoBandIdeo,2 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,356 mrna,409 mrna,417 mrna,429 refGene,289 refGene,297 refGene,309 refSeqComposite,1257 refSeqComposite,1265 refSeqComposite,1277 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 based augustusGene,28 chainHg38,320 chainHg38,346 chainMm10,320 chainMm10,346 chainMm39,320 chainMm39,346 chainNetHg38,323 chainNetHg38,349 chainNetMm10,322 chainNetMm10,348 chainNetMm39,323 chainNetMm39,349 genscan,26 netHg38,320 netHg38,346 netMm10,320 netMm10,346 netMm39,320 netMm39,346 refSeqComposite,251 refSeqComposite,359 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,136 gap,152 gc5BaseBw,25 refSeqComposite,897 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 be augustusGene,99 chainHg38,106 chainHg38,427 chainMm10,106 chainMm10,427 chainMm39,106 chainMm39,427 chainNetHg38,109 chainNetHg38,430 chainNetMm10,108 chainNetMm10,429 chainNetMm39,109 chainNetMm39,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 gc5BaseBw,41 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netHg38,106 netHg38,427 netMm10,106 netMm10,427 netMm39,106 netMm39,427 refGene,126 refSeqComposite,303 refSeqComposite,725 refSeqComposite,935 refSeqComposite,966 refSeqComposite,1026 refSeqComposite,1103 refSeqComposite,1191 refSeqComposite,1294 refSeqComposite,1301 refSeqComposite,1317 refSeqComposite,1389 refSeqComposite,1449 refSeqComposite,1480 refSeqComposite,1500 refSeqComposite,1508 refSeqComposite,1582 refSeqComposite,1604 refSeqComposite,1674 refSeqComposite,1699 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,86 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 bed3 windowmaskerSdust,76 been chainHg38,568 chainMm10,568 chainMm39,568 chainNetHg38,571 chainNetMm10,570 chainNetMm39,571 nestedRepeats,89 netHg38,568 netMm10,568 netMm39,568 refSeqComposite,635 refSeqComposite,673 refSeqComposite,683 refSeqComposite,698 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainHg38,900 chainMm10,900 chainMm39,900 chainNetHg38,903 chainNetMm10,902 chainNetMm39,903 netHg38,900 netMm10,900 netMm39,900 uniprot,934 begin refSeqComposite,222 refSeqComposite,351 beginning refSeqComposite,1048 refSeqComposite,1645 beloow refSeqComposite,337 below chainHg38,674 chainMm10,674 chainMm39,674 chainNetHg38,677 chainNetMm10,676 chainNetMm39,677 genscan,154 genscan,168 nestedRepeats,68 netHg38,674 netMm10,674 netMm39,674 refSeqComposite,1391 refSeqComposite,1528 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainHg38,265 chainHg38,510 chainMm10,265 chainMm10,510 chainMm39,265 chainMm39,510 chainNetHg38,268 chainNetHg38,513 chainNetMm10,267 chainNetMm10,512 chainNetMm39,268 chainNetMm39,513 mrna,424 netHg38,265 netHg38,510 netMm10,265 netMm10,510 netMm39,265 netMm39,510 refGene,304 refSeqComposite,1272 uniprot,1074 uniprot,1415 xenoRefGene,264 beta uniprot,364 better mrna,52 between HLTOGAannotvHg38v1,66 chainHg38,51 chainHg38,617 chainHg38,847 chainMm10,51 chainMm10,617 chainMm10,847 chainMm39,51 chainMm39,617 chainMm39,847 chainNetHg38,54 chainNetHg38,620 chainNetHg38,850 chainNetMm10,53 chainNetMm10,619 chainNetMm10,849 chainNetMm39,54 chainNetMm39,620 chainNetMm39,850 gap,126 gap,139 gold,97 gold,102 mrna,16 netHg38,51 netHg38,617 netHg38,847 netMm10,51 netMm10,617 netMm10,847 netMm39,51 netMm39,617 netMm39,847 refSeqComposite,64 refSeqComposite,460 refSeqComposite,874 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed refSeqComposite,1375 refSeqComposite,1386 refSeqComposite,1476 uniprot,1736 bigbedtobed refSeqComposite,1505 refSeqComposite,1545 uniprot,1767 uniprot,1812 bin refSeqComposite,1431 refSeqComposite,1461 binaries uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1519 uniprot,1781 biocomput chainHg38,1035 chainMm10,1035 chainMm39,1035 chainNetHg38,1038 chainNetMm10,1037 chainNetMm39,1038 netHg38,1035 netMm10,1035 netMm39,1035 bioinformatics augustusGene,307 augustusGene,332 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 biological uniprot,320 biology genscan,200 birds HLTOGAannotvHg38v1,60 augustusGene,203 black gap,71 gap,110 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,518 refGene,344 refSeqComposite,1731 xenoRefGene,303 blastz chainHg38,912 chainHg38,1099 chainMm10,912 chainMm10,1099 chainMm39,912 chainMm39,1099 chainNetHg38,915 chainNetHg38,1102 chainNetMm10,914 chainNetMm10,1101 chainNetMm39,915 chainNetMm39,1102 netHg38,912 netHg38,1099 netMm10,912 netMm10,1099 netMm39,912 netMm39,1099 blat mrna,394 mrna,516 refGene,265 refGene,342 refSeqComposite,1233 refSeqComposite,1729 xenoRefGene,225 blat--the xenoRefGene,302 blocks chainHg38,44 chainHg38,639 chainHg38,660 chainMm10,44 chainMm10,639 chainMm10,660 chainMm39,44 chainMm39,639 chainMm39,660 chainNetHg38,47 chainNetHg38,642 chainNetHg38,663 chainNetMm10,46 chainNetMm10,641 chainNetMm10,662 chainNetMm39,47 chainNetMm39,642 chainNetMm39,663 gold,107 gold,134 netHg38,44 netHg38,639 netHg38,660 netMm10,44 netMm10,639 netMm10,660 netMm39,44 netMm39,639 netMm39,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 blumer HLTOGAannotvHg38v1,344 bm HLTOGAannotvHg38v1,335 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainHg38,95 chainHg38,115 chainHg38,168 chainHg38,890 chainMm10,95 chainMm10,115 chainMm10,168 chainMm10,890 chainMm39,95 chainMm39,115 chainMm39,168 chainMm39,890 chainNetHg38,98 chainNetHg38,118 chainNetHg38,171 chainNetHg38,893 chainNetMm10,97 chainNetMm10,117 chainNetMm10,170 chainNetMm10,892 chainNetMm39,98 chainNetMm39,118 chainNetMm39,171 chainNetMm39,893 netHg38,95 netHg38,115 netHg38,168 netHg38,890 netMm10,95 netMm10,115 netMm10,168 netMm10,890 netMm39,95 netMm39,115 netMm39,168 netMm39,890 refGene,164 refGene,235 uniprot,675 uniprot,1616 xenoRefGene,124 xenoRefGene,195 bothgap chainHg38,741 chainMm10,741 chainMm39,741 chainNetHg38,744 chainNetMm10,743 chainNetMm39,744 netHg38,741 netMm10,741 netMm39,741 boundaries HLTOGAannotvHg38v1,111 gold,82 box chainHg38,370 chainHg38,452 chainMm10,370 chainMm10,452 chainMm39,370 chainMm39,452 chainNetHg38,373 chainNetHg38,455 chainNetMm10,372 chainNetMm10,454 chainNetMm39,373 chainNetMm39,455 gap,111 mrna,151 mrna,162 mrna,202 netHg38,370 netHg38,452 netMm10,370 netMm10,452 netMm39,370 netMm39,452 refGene,254 xenoRefGene,214 boxes chainHg38,121 chainHg38,131 chainHg38,441 chainMm10,121 chainMm10,131 chainMm10,441 chainMm39,121 chainMm39,131 chainMm39,441 chainNetHg38,124 chainNetHg38,134 chainNetHg38,444 chainNetMm10,123 chainNetMm10,133 chainNetMm10,443 chainNetMm39,124 chainNetMm39,134 chainNetMm39,444 gap,72 mrna,122 nestedRepeats,126 netHg38,121 netHg38,131 netHg38,441 netMm10,121 netMm10,131 netMm10,441 netMm39,121 netMm39,131 netMm39,441 refSeqComposite,165 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,942 branch-point augustusGene,55 brian uniprot,1959 bridge gold,132 bridged gap,100 briefly uniprot,778 brown gold,92 gold,106 refGene,360 refSeqComposite,1747 xenoRefGene,319 browser chainHg38,970 chainMm10,970 chainMm39,970 chainNetHg38,973 chainNetMm10,972 chainNetMm39,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netHg38,970 netMm10,970 netMm39,970 refSeqComposite,1121 refSeqComposite,1183 refSeqComposite,1309 refSeqComposite,1446 ucscToINSDC,19 ucscToRefSeq,14 uniprot,1544 uniprot,1721 browsing uniprot,1662 build refSeqComposite,299 uniprot,1552 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but HLTOGAannotvHg38v1,194 HLTOGAannotvHg38v1,249 chainHg38,543 chainMm10,543 chainMm39,543 chainNetHg38,546 chainNetMm10,545 chainNetMm39,546 netHg38,543 netMm10,543 netMm39,543 refSeqComposite,426 refSeqComposite,895 refSeqComposite,1028 refSeqComposite,1447 rmsk,311 uniprot,638 uniprot,1047 button chainHg38,341 chainMm10,341 chainMm39,341 chainNetHg38,344 chainNetMm10,343 chainNetMm39,344 netHg38,341 netMm10,341 netMm39,341 by HLTOGAannotvHg38v1,319 augustusGene,147 augustusGene,266 augustusGene,282 chainHg38,108 chainHg38,124 chainHg38,311 chainHg38,374 chainHg38,411 chainHg38,429 chainHg38,807 chainHg38,919 chainHg38,938 chainHg38,958 chainHg38,982 chainHg38,1003 chainMm10,108 chainMm10,124 chainMm10,311 chainMm10,374 chainMm10,411 chainMm10,429 chainMm10,807 chainMm10,919 chainMm10,938 chainMm10,958 chainMm10,982 chainMm10,1003 chainMm39,108 chainMm39,124 chainMm39,311 chainMm39,374 chainMm39,411 chainMm39,429 chainMm39,807 chainMm39,919 chainMm39,938 chainMm39,958 chainMm39,982 chainMm39,1003 chainNetHg38,111 chainNetHg38,127 chainNetHg38,314 chainNetHg38,377 chainNetHg38,414 chainNetHg38,432 chainNetHg38,810 chainNetHg38,922 chainNetHg38,941 chainNetHg38,961 chainNetHg38,985 chainNetHg38,1006 chainNetMm10,110 chainNetMm10,126 chainNetMm10,313 chainNetMm10,376 chainNetMm10,413 chainNetMm10,431 chainNetMm10,809 chainNetMm10,921 chainNetMm10,940 chainNetMm10,960 chainNetMm10,984 chainNetMm10,1005 chainNetMm39,111 chainNetMm39,127 chainNetMm39,314 chainNetMm39,377 chainNetMm39,414 chainNetMm39,432 chainNetMm39,810 chainNetMm39,922 chainNetMm39,941 chainNetMm39,961 chainNetMm39,985 chainNetMm39,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 gap,93 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,85 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netHg38,108 netHg38,124 netHg38,311 netHg38,374 netHg38,411 netHg38,429 netHg38,807 netHg38,919 netHg38,938 netHg38,958 netHg38,982 netHg38,1003 netMm10,108 netMm10,124 netMm10,311 netMm10,374 netMm10,411 netMm10,429 netMm10,807 netMm10,919 netMm10,938 netMm10,958 netMm10,982 netMm10,1003 netMm39,108 netMm39,124 netMm39,311 netMm39,374 netMm39,411 netMm39,429 netMm39,807 netMm39,919 netMm39,938 netMm39,958 netMm39,982 netMm39,1003 refGene,140 refGene,145 refGene,209 refGene,227 refGene,233 refGene,329 refGene,334 refSeqComposite,38 refSeqComposite,49 refSeqComposite,69 refSeqComposite,206 refSeqComposite,371 refSeqComposite,384 refSeqComposite,444 refSeqComposite,555 refSeqComposite,624 refSeqComposite,637 refSeqComposite,641 refSeqComposite,685 refSeqComposite,761 refSeqComposite,766 refSeqComposite,843 refSeqComposite,861 refSeqComposite,1200 refSeqComposite,1716 refSeqComposite,1721 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 ucscToINSDC,50 ucscToRefSeq,44 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c HLTOGAannotvHg38v1,337 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,913 refSeqComposite,954 refSeqComposite,981 refSeqComposite,1040 refSeqComposite,1067 refSeqComposite,1079 windowmaskerSdust,30 c-114100-125-31 chainHg38,669 chainMm10,669 chainMm39,669 chainNetHg38,672 chainNetMm10,671 chainNetMm39,672 netHg38,669 netMm10,669 netMm39,669 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainHg38,954 chainHg38,1000 chainMm10,954 chainMm10,1000 chainMm39,954 chainMm39,1000 chainNetHg38,957 chainNetHg38,1003 chainNetMm10,956 chainNetMm10,1002 chainNetMm39,957 chainNetMm39,1003 netHg38,954 netHg38,1000 netMm10,954 netMm10,1000 netMm39,954 netMm39,1000 can augustusGene,98 chainHg38,90 chainHg38,105 chainMm10,90 chainMm10,105 chainMm39,90 chainMm39,105 chainNetHg38,93 chainNetHg38,108 chainNetMm10,92 chainNetMm10,107 chainNetMm39,93 chainNetMm39,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 mrna,64 mrna,195 netHg38,90 netHg38,105 netMm10,90 netMm10,105 netMm39,90 netMm39,105 refGene,125 refSeqComposite,286 refSeqComposite,724 refSeqComposite,1102 refSeqComposite,1190 refSeqComposite,1293 refSeqComposite,1300 refSeqComposite,1315 refSeqComposite,1348 refSeqComposite,1388 refSeqComposite,1448 refSeqComposite,1456 refSeqComposite,1479 refSeqComposite,1499 refSeqComposite,1507 refSeqComposite,1560 refSeqComposite,1580 refSeqComposite,1603 refSeqComposite,1673 refSeqComposite,1698 rmsk,116 simpleRepeat,35 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,85 cannot uniprot,1269 cases chainHg38,190 chainHg38,398 chainMm10,190 chainMm10,398 chainMm39,190 chainMm39,398 chainNetHg38,193 chainNetHg38,401 chainNetMm10,192 chainNetMm10,400 chainNetMm39,193 chainNetMm39,401 netHg38,190 netHg38,398 netMm10,190 netMm10,398 netMm39,190 netMm39,398 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainHg38,499 chainMm10,499 chainMm39,499 chainNetHg38,502 chainNetMm10,501 chainNetMm39,502 netHg38,499 netMm10,499 netMm39,499 cauldron chainHg38,1052 chainMm10,1052 chainMm39,1052 chainNetHg38,1055 chainNetMm10,1054 chainNetMm39,1055 netHg38,1052 netMm10,1052 netMm39,1052 cause chainHg38,481 chainMm10,481 chainMm39,481 chainNetHg38,484 chainNetMm10,483 chainNetMm39,484 netHg38,481 netMm10,481 netMm39,481 caused chainHg38,107 chainMm10,107 chainMm39,107 chainNetHg38,110 chainNetMm10,109 chainNetMm39,110 netHg38,107 netMm10,107 netMm39,107 cavanaugh mrna,462 cdna augustusGene,299 refSeqComposite,266 refSeqComposite,362 cds HLTOGAannotvHg38v1,148 HLTOGAannotvHg38v1,170 HLTOGAannotvHg38v1,182 HLTOGAannotvHg38v1,203 HLTOGAannotvHg38v1,217 HLTOGAannotvHg38v1,229 HLTOGAannotvHg38v1,248 cell uniprot,563 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cesar HLTOGAannotvHg38v1,102 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainHg38,2 chainHg38,27 chainHg38,57 chainHg38,60 chainHg38,118 chainHg38,268 chainHg38,309 chainHg38,404 chainHg38,459 chainHg38,563 chainHg38,767 chainHg38,810 chainHg38,821 chainHg38,829 chainHg38,834 chainHg38,857 chainHg38,866 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,118 chainMm10,268 chainMm10,309 chainMm10,404 chainMm10,459 chainMm10,563 chainMm10,767 chainMm10,810 chainMm10,821 chainMm10,829 chainMm10,834 chainMm10,857 chainMm10,866 chainMm39,2 chainMm39,27 chainMm39,57 chainMm39,60 chainMm39,118 chainMm39,268 chainMm39,309 chainMm39,404 chainMm39,459 chainMm39,563 chainMm39,767 chainMm39,810 chainMm39,821 chainMm39,829 chainMm39,834 chainMm39,857 chainMm39,866 chainNetHg38,2 chainNetHg38,9 chainNetHg38,30 chainNetHg38,60 chainNetHg38,63 chainNetHg38,121 chainNetHg38,271 chainNetHg38,312 chainNetHg38,407 chainNetHg38,462 chainNetHg38,566 chainNetHg38,770 chainNetHg38,813 chainNetHg38,824 chainNetHg38,832 chainNetHg38,837 chainNetHg38,860 chainNetHg38,869 chainNetHg38Viewchain,1 chainNetHg38Viewchain,7 chainNetHg38Viewnet,7 chainNetMm10,8 chainNetMm10,29 chainNetMm10,59 chainNetMm10,62 chainNetMm10,120 chainNetMm10,270 chainNetMm10,311 chainNetMm10,406 chainNetMm10,461 chainNetMm10,565 chainNetMm10,769 chainNetMm10,812 chainNetMm10,823 chainNetMm10,831 chainNetMm10,836 chainNetMm10,859 chainNetMm10,868 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 chainNetMm39,2 chainNetMm39,9 chainNetMm39,30 chainNetMm39,60 chainNetMm39,63 chainNetMm39,121 chainNetMm39,271 chainNetMm39,312 chainNetMm39,407 chainNetMm39,462 chainNetMm39,566 chainNetMm39,770 chainNetMm39,813 chainNetMm39,824 chainNetMm39,832 chainNetMm39,837 chainNetMm39,860 chainNetMm39,869 chainNetMm39Viewchain,1 chainNetMm39Viewchain,7 chainNetMm39Viewnet,7 netHg38,27 netHg38,57 netHg38,60 netHg38,118 netHg38,268 netHg38,309 netHg38,404 netHg38,459 netHg38,563 netHg38,767 netHg38,810 netHg38,821 netHg38,829 netHg38,834 netHg38,857 netHg38,866 netMm10,27 netMm10,57 netMm10,60 netMm10,118 netMm10,268 netMm10,309 netMm10,404 netMm10,459 netMm10,563 netMm10,767 netMm10,810 netMm10,821 netMm10,829 netMm10,834 netMm10,857 netMm10,866 netMm39,27 netMm39,57 netMm39,60 netMm39,118 netMm39,268 netMm39,309 netMm39,404 netMm39,459 netMm39,563 netMm39,767 netMm39,810 netMm39,821 netMm39,829 netMm39,834 netMm39,857 netMm39,866 uniprot,290 chained chainHg38,8 chainMm10,8 chainMm39,8 chainnet chainHg38,784 chainHg38,989 chainMm10,784 chainMm10,989 chainMm39,784 chainMm39,989 chainNetHg38,787 chainNetHg38,992 chainNetMm10,2 chainNetMm10,786 chainNetMm10,991 chainNetMm39,787 chainNetMm39,992 netHg38,784 netHg38,989 netMm10,784 netMm10,989 netMm39,784 netMm39,989 chains chainHg38,193 chainHg38,204 chainHg38,215 chainHg38,314 chainHg38,353 chainHg38,386 chainHg38,391 chainHg38,413 chainHg38,425 chainHg38,432 chainHg38,489 chainHg38,657 chainHg38,672 chainHg38,686 chainHg38,755 chainHg38,776 chainHg38,791 chainHg38,851 chainHg38,882 chainHg38,977 chainMm10,193 chainMm10,204 chainMm10,215 chainMm10,314 chainMm10,353 chainMm10,386 chainMm10,391 chainMm10,413 chainMm10,425 chainMm10,432 chainMm10,489 chainMm10,657 chainMm10,672 chainMm10,686 chainMm10,755 chainMm10,776 chainMm10,791 chainMm10,851 chainMm10,882 chainMm10,977 chainMm39,193 chainMm39,204 chainMm39,215 chainMm39,314 chainMm39,353 chainMm39,386 chainMm39,391 chainMm39,413 chainMm39,425 chainMm39,432 chainMm39,489 chainMm39,657 chainMm39,672 chainMm39,686 chainMm39,755 chainMm39,776 chainMm39,791 chainMm39,851 chainMm39,882 chainMm39,977 chainNetHg38,196 chainNetHg38,207 chainNetHg38,218 chainNetHg38,317 chainNetHg38,356 chainNetHg38,389 chainNetHg38,394 chainNetHg38,416 chainNetHg38,428 chainNetHg38,435 chainNetHg38,492 chainNetHg38,660 chainNetHg38,675 chainNetHg38,689 chainNetHg38,758 chainNetHg38,779 chainNetHg38,794 chainNetHg38,854 chainNetHg38,885 chainNetHg38,980 chainNetMm10,195 chainNetMm10,206 chainNetMm10,217 chainNetMm10,316 chainNetMm10,355 chainNetMm10,388 chainNetMm10,393 chainNetMm10,415 chainNetMm10,427 chainNetMm10,434 chainNetMm10,491 chainNetMm10,659 chainNetMm10,674 chainNetMm10,688 chainNetMm10,757 chainNetMm10,778 chainNetMm10,793 chainNetMm10,853 chainNetMm10,884 chainNetMm10,979 chainNetMm39,196 chainNetMm39,207 chainNetMm39,218 chainNetMm39,317 chainNetMm39,356 chainNetMm39,389 chainNetMm39,394 chainNetMm39,416 chainNetMm39,428 chainNetMm39,435 chainNetMm39,492 chainNetMm39,660 chainNetMm39,675 chainNetMm39,689 chainNetMm39,758 chainNetMm39,779 chainNetMm39,794 chainNetMm39,854 chainNetMm39,885 chainNetMm39,980 netHg38,193 netHg38,204 netHg38,215 netHg38,314 netHg38,353 netHg38,386 netHg38,391 netHg38,413 netHg38,425 netHg38,432 netHg38,489 netHg38,657 netHg38,672 netHg38,686 netHg38,755 netHg38,776 netHg38,791 netHg38,851 netHg38,882 netHg38,977 netMm10,193 netMm10,204 netMm10,215 netMm10,314 netMm10,353 netMm10,386 netMm10,391 netMm10,413 netMm10,425 netMm10,432 netMm10,489 netMm10,657 netMm10,672 netMm10,686 netMm10,755 netMm10,776 netMm10,791 netMm10,851 netMm10,882 netMm10,977 netMm39,193 netMm39,204 netMm39,215 netMm39,314 netMm39,353 netMm39,386 netMm39,391 netMm39,413 netMm39,425 netMm39,432 netMm39,489 netMm39,657 netMm39,672 netMm39,686 netMm39,755 netMm39,776 netMm39,791 netMm39,851 netMm39,882 netMm39,977 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,68 refSeqComposite,905 refSeqComposite,919 changed rmsk,285 uniprot,1382 characteristic mrna,273 check chainHg38,336 chainMm10,336 chainMm39,336 chainNetHg38,339 chainNetMm10,338 chainNetMm39,339 netHg38,336 netMm10,336 netMm39,336 check-box refSeqComposite,729 checkbox uniprot,231 chiaromonte chainHg38,1022 chainMm10,1022 chainMm39,1022 chainNetHg38,1025 chainNetMm10,1024 chainNetMm39,1025 netHg38,1022 netMm10,1022 netMm39,1022 chicken HLTOGAannotvHg38v1,57 augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,229 mrna,268 uniprot,657 chosen mrna,291 refSeqComposite,534 chr16 refSeqComposite,1553 chr4 chainHg38,368 chainMm10,368 chainMm39,368 chainNetHg38,371 chainNetMm10,370 chainNetMm39,371 netHg38,368 netMm10,368 netMm39,368 chr6 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,158 chrom refSeqComposite,1552 uniprot,1819 chromosome chainHg38,245 chainHg38,323 chainHg38,348 chainHg38,356 chainHg38,366 chainHg38,375 chainHg38,522 chainHg38,537 chainHg38,553 chainHg38,621 chainHg38,626 chainMm10,245 chainMm10,323 chainMm10,348 chainMm10,356 chainMm10,366 chainMm10,375 chainMm10,522 chainMm10,537 chainMm10,553 chainMm10,621 chainMm10,626 chainMm39,245 chainMm39,323 chainMm39,348 chainMm39,356 chainMm39,366 chainMm39,375 chainMm39,522 chainMm39,537 chainMm39,553 chainMm39,621 chainMm39,626 chainNetHg38,248 chainNetHg38,326 chainNetHg38,351 chainNetHg38,359 chainNetHg38,369 chainNetHg38,378 chainNetHg38,525 chainNetHg38,540 chainNetHg38,556 chainNetHg38,624 chainNetHg38,629 chainNetMm10,247 chainNetMm10,325 chainNetMm10,350 chainNetMm10,358 chainNetMm10,368 chainNetMm10,377 chainNetMm10,524 chainNetMm10,539 chainNetMm10,555 chainNetMm10,623 chainNetMm10,628 chainNetMm39,248 chainNetMm39,326 chainNetMm39,351 chainNetMm39,359 chainNetMm39,369 chainNetMm39,378 chainNetMm39,525 chainNetMm39,540 chainNetMm39,556 chainNetMm39,624 chainNetMm39,629 cytoBandIdeo,1 gap,142 netHg38,245 netHg38,323 netHg38,348 netHg38,356 netHg38,366 netHg38,375 netHg38,522 netHg38,537 netHg38,553 netHg38,621 netHg38,626 netMm10,245 netMm10,323 netMm10,348 netMm10,356 netMm10,366 netMm10,375 netMm10,522 netMm10,537 netMm10,553 netMm10,621 netMm10,626 netMm39,245 netMm39,323 netMm39,348 netMm39,356 netMm39,366 netMm39,375 netMm39,522 netMm39,537 netMm39,553 netMm39,621 netMm39,626 ucscToINSDC,20 ucscToRefSeq,15 uniprot,1416 chromosome-based chainHg38,316 chainMm10,316 chainMm39,316 chainNetHg38,319 chainNetMm10,318 chainNetMm39,319 netHg38,316 netMm10,316 netMm39,316 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 clark mrna,464 class rmsk,199 rmsk,253 classes rmsk,150 classification HLTOGAannotvHg38v1,140 HLTOGAannotvHg38v1,304 rmsk,266 rmsk,282 classify HLTOGAannotvHg38v1,256 classifying HLTOGAannotvHg38v1,35 clawson gc5BaseBw,83 ucscToINSDC,52 ucscToRefSeq,46 cleaved uniprot,249 click chainHg38,449 chainHg38,463 chainMm10,449 chainMm10,463 chainMm39,449 chainMm39,463 chainNetHg38,452 chainNetHg38,466 chainNetMm10,451 chainNetMm10,465 chainNetMm39,452 chainNetMm39,466 gc5BaseBw,56 netHg38,449 netHg38,463 netMm10,449 netMm10,463 netMm39,449 netMm39,463 refGene,148 refGene,252 refSeqComposite,747 refSeqComposite,769 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,108 xenoRefGene,212 clicking HLTOGAannotvHg38v1,294 uniprot,1633 clinical refSeqComposite,581 clipped nestedRepeats,224 closest augustusGene,241 clusters refSeqComposite,411 cm refGene,371 refSeqComposite,1758 xenoRefGene,330 code refSeqComposite,1513 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding HLTOGAannotvHg38v1,113 HLTOGAannotvHg38v1,149 refGene,250 refSeqComposite,1080 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,210 codon genscan,100 genscan,122 mrna,329 mrna,354 refGene,176 refGene,183 refGene,198 refGene,228 refSeqComposite,716 refSeqComposite,810 refSeqComposite,817 refSeqComposite,832 refSeqComposite,862 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 refGene,203 refGene,210 refSeqComposite,837 refSeqComposite,844 xenoRefGene,163 xenoRefGene,170 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,643 collaborators refSeqComposite,687 collapsed nestedRepeats,173 collection refGene,34 refSeqComposite,31 xenoRefGene,31 color chainHg38,344 chainMm10,344 chainMm39,344 chainNetHg38,347 chainNetMm10,346 chainNetMm39,347 genscan,86 genscan,96 mrna,74 mrna,270 netHg38,344 netMm10,344 netMm39,344 refGene,96 refGene,207 refSeqComposite,603 refSeqComposite,626 refSeqComposite,841 rmsk,207 xenoRefGene,56 xenoRefGene,167 color-coded HLTOGAannotvHg38v1,139 coloration gold,93 colored chainHg38,319 chainMm10,319 chainMm39,319 chainNetHg38,322 chainNetMm10,321 chainNetMm39,322 mrna,370 netHg38,319 netMm10,319 netMm39,319 uniprot,160 uniprot,176 coloring chainHg38,335 chainMm10,335 chainMm39,335 chainNetHg38,338 chainNetMm10,337 chainNetMm39,338 genscan,116 mrna,330 mrna,357 netHg38,335 netMm10,335 netMm39,335 refGene,177 refGene,184 refGene,222 refSeqComposite,811 refSeqComposite,818 refSeqComposite,856 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors refGene,119 refGene,199 refSeqComposite,833 xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 refSeqComposite,1423 refSeqComposite,1434 combination mrna,232 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1544 refSeqComposite,1608 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainHg38,10 chainMm10,10 chainMm39,10 chainNetHg38,13 chainNetHg38Viewchain,11 chainNetHg38Viewnet,11 chainNetMm10,12 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 chainNetMm39,13 chainNetMm39Viewchain,11 chainNetMm39Viewnet,11 netHg38,10 netMm10,10 netMm39,10 compare mrna,339 refGene,193 refSeqComposite,827 xenoRefGene,153 comparison genscan,109 uniprot,1260 compiled refSeqComposite,1509 uniprot,1771 complete genscan,213 completely refGene,175 refSeqComposite,809 uniprot,1464 xenoRefGene,135 complex chainHg38,161 chainMm10,161 chainMm39,161 chainNetHg38,164 chainNetMm10,163 chainNetMm39,164 netHg38,161 netMm10,161 netMm39,161 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,135 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,148 compositional genscan,41 uniprot,399 computational genscan,196 uniprot,51 concerning refGene,66 refSeqComposite,125 conditional augustusGene,118 configuration HLTOGAannotvHg38v1,131 chainHg38,308 chainMm10,308 chainMm39,308 chainNetHg38,311 chainNetMm10,310 chainNetMm39,311 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,27 nestedRepeats,114 netHg38,308 netMm10,308 netMm39,308 refGene,84 refSeqComposite,143 rmsk,138 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,44 configured gc5BaseBw,42 mrna,326 refGene,127 refSeqComposite,726 xenoRefGene,87 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1214 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,163 contact uniprot,686 uniprot,1440 contain uniprot,1163 contained chainHg38,883 chainMm10,883 chainMm39,883 chainNetHg38,886 chainNetMm10,885 chainNetMm39,886 netHg38,883 netMm10,883 netMm39,883 refSeqComposite,1138 containing refSeqComposite,1653 contains gap,117 mrna,188 refGene,180 refSeqComposite,151 refSeqComposite,868 xenoRefGene,140 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gap,124 gold,81 contigs gap,84 gap,127 gold,73 gold,98 gold,115 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refGene,130 refSeqComposite,730 xenoRefGene,90 convenience uniprot,404 conventions HLTOGAannotvHg38v1,129 chainHg38,306 chainMm10,306 chainMm39,306 chainNetHg38,309 chainNetMm10,308 chainNetMm39,309 genscan,62 genscan,70 mrna,25 mrna,33 nestedRepeats,112 netHg38,306 netMm10,306 netMm39,306 refGene,82 refGene,90 refSeqComposite,141 refSeqComposite,451 refSeqComposite,597 rmsk,136 uniprot,447 xenoRefGene,42 xenoRefGene,50 converted chainHg38,598 chainMm10,598 chainMm39,598 chainNetHg38,601 chainNetMm10,600 chainNetMm39,601 netHg38,598 netMm10,598 netMm39,598 refSeqComposite,1170 refSeqComposite,1583 uniprot,1477 uniprot,1760 coordinates refSeqComposite,36 refSeqComposite,67 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refGene,61 refSeqComposite,120 corresponds mrna,171 could refSeqComposite,965 refSeqComposite,1540 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,130 gap,144 counts gold,142 coverage uniprot,1485 covered chainHg38,806 chainMm10,806 chainMm39,806 chainNetHg38,809 chainNetMm10,808 chainNetMm39,809 gap,24 gold,26 netHg38,806 netMm10,806 netMm39,806 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,309 windowmaskerSdust,48 created chainHg38,981 chainMm10,981 chainMm39,981 chainNetHg38,984 chainNetMm10,983 chainNetMm39,984 microsat,89 netHg38,981 netMm10,981 netMm39,981 refSeqComposite,101 refSeqComposite,1149 rmsk,13 uniprot,824 uniprot,1942 creates chainHg38,631 chainMm10,631 chainMm39,631 chainNetHg38,634 chainNetMm10,633 chainNetMm39,634 netHg38,631 netMm10,631 netMm39,631 credits HLTOGAannotvHg38v1,314 augustusGene,247 chainHg38,907 chainMm10,907 chainMm39,907 chainNetHg38,910 chainNetMm10,909 chainNetMm39,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 gc5BaseBw,71 genscan,169 microsat,104 mrna,437 nestedRepeats,302 netHg38,907 netMm10,907 netMm39,907 refGene,317 refSeqComposite,1706 rmsk,325 simpleRepeat,66 ucscToINSDC,42 ucscToRefSeq,36 uniprot,1938 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,246 mrna,264 mrna,302 mrna,320 cruz chainHg38,957 chainHg38,1002 chainMm10,957 chainMm10,1002 chainMm39,957 chainMm39,1002 chainNetHg38,960 chainNetHg38,1005 chainNetMm10,959 chainNetMm10,1004 chainNetMm39,960 chainNetMm39,1005 netHg38,957 netHg38,1002 netMm10,957 netMm10,1002 netMm39,957 netMm39,1002 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refGene,333 refGene,411 refSeqComposite,87 refSeqComposite,201 refSeqComposite,209 refSeqComposite,250 refSeqComposite,314 refSeqComposite,399 refSeqComposite,421 refSeqComposite,468 refSeqComposite,519 refSeqComposite,552 refSeqComposite,587 refSeqComposite,1408 refSeqComposite,1668 refSeqComposite,1720 refSeqComposite,1798 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,106 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,78 refSeqComposite,472 cutoff refSeqComposite,938 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d HLTOGAannotvHg38v1,341 augustusGene,293 chainHg38,1049 chainHg38,1093 chainMm10,1049 chainMm10,1093 chainMm39,1049 chainMm39,1093 chainNetHg38,1052 chainNetHg38,1096 chainNetMm10,1051 chainNetMm10,1095 chainNetMm39,1052 chainNetMm39,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 genscan,192 netHg38,1049 netHg38,1093 netMm10,1049 netMm10,1093 netMm39,1049 netMm39,1093 d23-6 mrna,509 d36-42 mrna,483 d501-4 refGene,429 refSeqComposite,1816 xenoRefGene,388 d71-5 uniprot,2005 d756-63 refGene,395 refSeqComposite,1782 xenoRefGene,354 da mrna,461 mrna,489 dark refGene,113 refSeqComposite,621 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,73 darkly mrna,47 data HLTOGAannotvHg38v1,316 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 gap,96 gc5BaseBw,73 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 refGene,37 refGene,327 refSeqComposite,153 refSeqComposite,652 refSeqComposite,1153 refSeqComposite,1159 refSeqComposite,1285 refSeqComposite,1289 refSeqComposite,1311 refSeqComposite,1363 refSeqComposite,1648 refSeqComposite,1714 rmsk,126 rmsk,287 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,34 xenoRefGene,287 database chainHg38,973 chainMm10,973 chainMm39,973 chainNetHg38,976 chainNetMm10,975 chainNetMm39,976 mrna,481 mrna,507 nestedRepeats,345 netHg38,973 netMm10,973 netMm39,973 refGene,393 refGene,414 refGene,427 refSeqComposite,560 refSeqComposite,1398 refSeqComposite,1780 refSeqComposite,1801 refSeqComposite,1814 rmsk,125 rmsk,368 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases mrna,455 refSeqComposite,278 refSeqComposite,425 dataset refSeqComposite,528 david chainHg38,967 chainMm10,967 chainMm39,967 chainNetHg38,970 chainNetMm10,969 chainNetMm39,970 netHg38,967 netMm10,967 netMm39,967 de augustusGene,303 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainHg38,4 chainHg38,66 chainHg38,300 chainMm10,4 chainMm10,66 chainMm10,300 chainNetHg38,5 chainNetHg38,69 chainNetHg38,303 chainNetHg38Viewchain,3 chainNetHg38Viewnet,3 chainNetMm10,4 chainNetMm10,68 chainNetMm10,302 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netHg38,4 netHg38,66 netHg38,300 netMm10,4 netMm10,66 netMm10,300 rmsk,412 rmsk,434 default chainHg38,312 chainMm10,312 chainMm39,312 chainNetHg38,315 chainNetMm10,314 chainNetMm39,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netHg38,312 netMm10,312 netMm39,312 refGene,141 refGene,234 refSeqComposite,762 refSeqComposite,1036 refSeqComposite,1063 uniprot,225 xenoRefGene,101 xenoRefGene,194 defined refSeqComposite,623 uniprot,305 uniprot,1387 definition gap,39 gold,41 deletion chainHg38,145 chainHg38,1054 chainMm10,145 chainMm10,1054 chainMm39,145 chainMm39,1054 chainNetHg38,148 chainNetHg38,1057 chainNetMm10,147 chainNetMm10,1056 chainNetMm39,148 chainNetMm39,1057 mrna,379 netHg38,145 netHg38,1054 netMm10,145 netMm10,1054 netMm39,145 netMm39,1054 refSeqComposite,946 refSeqComposite,1042 refSeqComposite,1069 rmsk,220 deletions chainHg38,113 chainHg38,176 chainMm10,113 chainMm10,176 chainMm39,113 chainMm39,176 chainNetHg38,116 chainNetHg38,179 chainNetMm10,115 chainNetMm10,178 chainNetMm39,116 chainNetMm39,179 netHg38,113 netHg38,176 netMm10,113 netMm10,176 netMm39,113 netMm39,176 delivered gap,51 gold,50 dense gold,67 mrna,39 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,71 windowmaskerSdust,15 deprecated uniprot,1044 derived chainHg38,757 chainMm10,757 chainMm39,757 chainNetHg38,760 chainNetMm10,759 chainNetMm39,760 netHg38,757 netMm10,757 netMm39,757 uniprot,830 described chainHg38,764 chainMm10,764 chainMm39,764 chainNetHg38,767 chainNetMm10,766 chainNetMm39,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netHg38,764 netMm10,764 netMm39,764 refSeqComposite,1637 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,60 gold,59 describing refSeqComposite,254 description HLTOGAannotvHg38v1,15 augustusGene,12 chainHg38,12 chainHg38,769 chainMm10,12 chainMm10,769 chainMm39,12 chainMm39,769 chainNetHg38,15 chainNetHg38,772 chainNetMm10,14 chainNetMm10,771 chainNetMm39,15 chainNetMm39,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netHg38,12 netHg38,769 netMm10,12 netMm10,769 netMm39,12 netMm39,769 refGene,15 refGene,137 refSeqComposite,11 refSeqComposite,737 rmsk,9 simpleRepeat,11 ucscToINSDC,13 ucscToRefSeq,8 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 designed refSeqComposite,1436 uniprot,1355 desired mrna,231 destined uniprot,244 detail genscan,164 detailed augustusGene,90 chainHg38,455 chainHg38,474 chainMm10,455 chainMm10,474 chainMm39,455 chainMm39,474 chainNetHg38,458 chainNetHg38,477 chainNetMm10,457 chainNetMm10,476 chainNetMm39,458 chainNetMm39,477 nestedRepeats,70 netHg38,455 netHg38,474 netMm10,455 netMm10,474 netMm39,455 netMm39,474 rmsk,37 uniprot,692 details refSeqComposite,94 refSeqComposite,1122 rmsk,119 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determine HLTOGAannotvHg38v1,107 determined windowmaskerSdust,19 determining chainHg38,479 chainMm10,479 chainMm39,479 chainNetHg38,482 chainNetMm10,481 chainNetMm39,482 netHg38,479 netMm10,479 netMm39,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainHg38,914 chainHg38,949 chainHg38,995 chainMm10,914 chainMm10,949 chainMm10,995 chainMm39,914 chainMm39,949 chainMm39,995 chainNetHg38,917 chainNetHg38,952 chainNetHg38,998 chainNetMm10,916 chainNetMm10,951 chainNetMm10,997 chainNetMm39,917 chainNetMm39,952 chainNetMm39,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netHg38,914 netHg38,949 netHg38,995 netMm10,914 netMm10,949 netMm10,995 netMm39,914 netMm39,949 netMm39,995 dfam rmsk,112 dg HLTOGAannotvHg38v1,351 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,582 diekhans augustusGene,288 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ refSeqComposite,287 uniprot,746 uniprot,1131 difference uniprot,1251 differences refSeqComposite,63 refSeqComposite,459 refSeqComposite,888 refSeqComposite,957 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainHg38,554 chainMm10,554 chainMm39,554 chainNetHg38,557 chainNetMm10,556 chainNetMm39,557 gc5BaseBw,50 genscan,54 netHg38,554 netMm10,554 netMm39,554 refGene,74 refSeqComposite,98 refSeqComposite,133 refSeqComposite,870 rmsk,149 uniprot,634 differing refSeqComposite,152 diffs refSeqComposite,456 refSeqComposite,866 refSeqComposite,1196 refSeqComposite,1370 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 uniprot,993 directory refSeqComposite,1526 refSeqComposite,1575 refSeqComposite,1595 rmsk,134 discarded chainHg38,683 chainMm10,683 chainMm39,683 chainNetHg38,686 chainNetMm10,685 chainNetMm39,686 netHg38,683 netMm10,683 netMm39,683 refGene,275 refSeqComposite,1243 xenoRefGene,235 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display HLTOGAannotvHg38v1,128 chainHg38,237 chainHg38,305 chainHg38,350 chainHg38,380 chainHg38,439 chainHg38,468 chainHg38,497 chainHg38,971 chainMm10,237 chainMm10,305 chainMm10,350 chainMm10,380 chainMm10,439 chainMm10,468 chainMm10,497 chainMm10,971 chainMm39,237 chainMm39,305 chainMm39,350 chainMm39,380 chainMm39,439 chainMm39,468 chainMm39,497 chainMm39,971 chainNetHg38,240 chainNetHg38,308 chainNetHg38,353 chainNetHg38,383 chainNetHg38,442 chainNetHg38,471 chainNetHg38,500 chainNetHg38,974 chainNetMm10,239 chainNetMm10,307 chainNetMm10,352 chainNetMm10,382 chainNetMm10,441 chainNetMm10,470 chainNetMm10,499 chainNetMm10,973 chainNetMm39,240 chainNetMm39,308 chainNetMm39,353 chainNetMm39,383 chainNetMm39,442 chainNetMm39,471 chainNetMm39,500 chainNetMm39,974 genscan,61 genscan,69 genscan,104 gold,130 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netHg38,237 netHg38,305 netHg38,350 netHg38,380 netHg38,439 netHg38,468 netHg38,497 netHg38,971 netMm10,237 netMm10,305 netMm10,350 netMm10,380 netMm10,439 netMm10,468 netMm10,497 netMm10,971 netMm39,237 netMm39,305 netMm39,350 netMm39,380 netMm39,439 netMm39,468 netMm39,497 netMm39,971 refGene,81 refGene,89 refGene,118 refGene,154 refGene,197 refSeqComposite,140 refSeqComposite,450 refSeqComposite,596 refSeqComposite,717 refSeqComposite,775 refSeqComposite,831 refSeqComposite,1179 refSeqComposite,1442 rmsk,135 rmsk,141 rmsk,212 uniprot,446 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainHg38,416 chainHg38,513 chainHg38,688 chainMm10,416 chainMm10,513 chainMm10,688 chainMm39,416 chainMm39,513 chainMm39,688 chainNetHg38,419 chainNetHg38,516 chainNetHg38,691 chainNetMm10,418 chainNetMm10,515 chainNetMm10,690 chainNetMm39,419 chainNetMm39,516 chainNetMm39,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netHg38,416 netHg38,513 netHg38,688 netMm10,416 netMm10,513 netMm10,688 netMm39,416 netMm39,513 netMm39,688 refGene,242 refSeqComposite,1115 xenoRefGene,202 displays chainHg38,120 chainMm10,120 chainMm39,120 chainNetHg38,123 chainNetMm10,122 chainNetMm39,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netHg38,120 netMm10,120 netMm39,120 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distinguish HLTOGAannotvHg38v1,92 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,84 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainHg38,906 chainMm10,906 chainMm39,906 chainNetHg38,909 chainNetMm10,908 chainNetMm39,909 nestedRepeats,212 netHg38,906 netMm10,906 netMm39,906 divided uniprot,56 dj mrna,469 mrna,493 dl mrna,497 dna chainHg38,1015 chainMm10,1015 chainMm39,1015 chainNetHg38,1018 chainNetMm10,1017 chainNetMm39,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netHg38,1015 netMm10,1015 netMm39,1015 refSeqComposite,1081 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,389 uniprot,168 uniprot,1129 doc rmsk,132 document gap,57 gold,56 documentation gap,29 gold,31 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainHg38,128 chainHg38,157 chainMm10,128 chainMm10,157 chainMm39,128 chainMm39,157 chainNetHg38,131 chainNetHg38,160 chainNetMm10,130 chainNetMm10,159 chainNetMm39,131 chainNetMm39,160 netHg38,128 netHg38,157 netMm10,128 netMm10,157 netMm39,128 netMm39,157 refSeqComposite,1016 double-lined chainHg38,217 chainMm10,217 chainMm39,217 chainNetHg38,220 chainNetMm10,219 chainNetMm39,220 netHg38,217 netMm10,217 netMm39,217 double-sided chainHg38,102 chainMm10,102 chainMm39,102 chainNetHg38,105 chainNetMm10,104 chainNetMm39,105 netHg38,102 netMm10,102 netMm39,102 download refSeqComposite,1561 refSeqComposite,1704 uniprot,1744 uniprot,1983 downloaded refSeqComposite,1162 refSeqComposite,1326 refSeqComposite,1515 ucscToINSDC,36 ucscToRefSeq,30 uniprot,1741 uniprot,1777 downloading uniprot,1787 downloads refSeqComposite,1329 refSeqComposite,1345 refSeqComposite,1484 refSeqComposite,1574 refSeqComposite,1599 refSeqComposite,1678 rmsk,76 uniprot,1698 downstream refSeqComposite,1453 dr refGene,405 refSeqComposite,1792 xenoRefGene,364 drawn gap,107 gold,126 draws uniprot,1532 drosophila augustusGene,213 due HLTOGAannotvHg38v1,207 chainHg38,142 chainHg38,210 chainHg38,222 chainMm10,142 chainMm10,210 chainMm10,222 chainMm39,142 chainMm39,210 chainMm39,222 chainNetHg38,145 chainNetHg38,213 chainNetHg38,225 chainNetMm10,144 chainNetMm10,212 chainNetMm10,224 chainNetMm39,145 chainNetMm39,213 chainNetMm39,225 netHg38,142 netHg38,210 netHg38,222 netMm10,142 netMm10,210 netMm10,222 netMm39,142 netMm39,210 netMm39,222 refSeqComposite,975 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainHg38,1053 chainMm10,1053 chainMm39,1053 chainNetHg38,1056 chainNetMm10,1055 chainNetMm39,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netHg38,1053 netMm10,1053 netMm39,1053 during chainHg38,811 chainMm10,811 chainMm39,811 chainNetHg38,814 chainNetMm10,813 chainNetMm39,814 netHg38,811 netMm10,811 netMm39,811 dynamic chainHg38,644 chainMm10,644 chainMm39,644 chainNetHg38,647 chainNetMm10,646 chainNetMm39,647 netHg38,644 netMm10,644 netMm39,644 e HLTOGAannotvHg38v1,339 uniprot,2021 e.g chainHg38,367 chainMm10,367 chainMm39,367 chainNetHg38,370 chainNetMm10,369 chainNetMm39,370 netHg38,367 netMm10,367 netMm39,367 refSeqComposite,1132 uniprot,398 uniprot,467 eabn3107 HLTOGAannotvHg38v1,370 each HLTOGAannotvHg38v1,132 chainHg38,255 chainMm10,255 chainMm39,255 chainNetHg38,258 chainNetMm10,257 chainNetMm39,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,160 nestedRepeats,120 netHg38,255 netMm10,255 netMm39,255 refSeqComposite,538 refSeqComposite,1425 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either chainHg38,125 chainMm10,125 chainMm39,125 chainNetHg38,128 chainNetMm10,127 chainNetMm39,128 gap,86 netHg38,125 netMm10,125 netMm39,125 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainHg38,817 chainMm10,817 chainMm39,817 chainNetHg38,820 chainNetMm10,819 chainNetMm39,820 netHg38,817 netMm10,817 netMm39,817 encode HLTOGAannotvHg38v1,161 HLTOGAannotvHg38v1,191 HLTOGAannotvHg38v1,267 HLTOGAannotvHg38v1,290 end refSeqComposite,1050 refSeqComposite,1556 rmsk,245 uniprot,126 uniprot,210 uniprot,1823 enough HLTOGAannotvHg38v1,254 refSeqComposite,1024 ensembl uniprot,731 uniprot,834 uniprot,865 enter chainHg38,361 chainMm10,361 chainMm39,361 chainNetHg38,364 chainNetMm10,363 chainNetMm39,364 netHg38,361 netMm10,361 netMm39,361 entered mrna,197 mrna,207 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1354 ermolaeva refGene,368 refSeqComposite,1755 xenoRefGene,327 errors refSeqComposite,949 especially mrna,98 est mrna,9 refSeqComposite,263 refSeqComposite,363 established refSeqComposite,684 et HLTOGAannotvHg38v1,354 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 refGene,378 refSeqComposite,1765 xenoRefGene,337 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every chainHg38,270 chainMm10,270 chainMm39,270 chainNetHg38,273 chainNetMm10,272 chainNetMm39,273 netHg38,270 netMm10,270 netMm39,270 refSeqComposite,475 uniprot,1571 evidence HLTOGAannotvHg38v1,196 HLTOGAannotvHg38v1,250 HLTOGAannotvHg38v1,283 refSeqComposite,260 refSeqComposite,275 evolution chainHg38,1050 chainMm10,1050 chainMm39,1050 chainNetHg38,1053 chainNetMm10,1052 chainNetMm39,1053 netHg38,1050 netMm10,1050 netMm39,1050 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 ew mrna,473 exact uniprot,1622 uniprot,1747 example mrna,129 mrna,182 refSeqComposite,1530 rmsk,256 uniprot,1450 uniprot,1811 uniprot,1901 examples refSeqComposite,405 except refSeqComposite,40 uniprot,508 exclude mrna,77 mrna,282 mrna,288 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exhibits HLTOGAannotvHg38v1,154 HLTOGAannotvHg38v1,183 HLTOGAannotvHg38v1,230 exist chainHg38,400 chainMm10,400 chainMm39,400 chainNetHg38,403 chainNetMm10,402 chainNetMm39,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 netHg38,400 netMm10,400 netMm39,400 refSeqComposite,292 exists refSeqComposite,329 exon HLTOGAannotvHg38v1,312 augustusGene,86 exons HLTOGAannotvHg38v1,114 chainHg38,48 chainMm10,48 chainMm39,48 chainNetHg38,51 chainNetMm10,50 chainNetMm39,51 genscan,44 netHg38,48 netMm10,48 netMm39,48 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,661 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 refSeqComposite,1302 uniprot,1716 expressed mrna,137 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1532 extracted nestedRepeats,23 f chainHg38,1023 chainMm10,1023 chainMm39,1023 chainNetHg38,1026 chainNetMm10,1025 chainNetMm39,1026 netHg38,1023 netMm10,1023 netMm39,1023 refGene,365 refSeqComposite,1752 xenoRefGene,324 facilitate genscan,106 uniprot,1852 factor mrna,174 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 genscan,60 nestedRepeats,298 refGene,80 refSeqComposite,139 rmsk,321 uniprot,1839 far uniprot,599 farrell refGene,370 refSeqComposite,1757 xenoRefGene,329 fasta refSeqComposite,1658 feature chainHg38,241 chainMm10,241 chainMm39,241 chainNetHg38,244 chainNetMm10,243 chainNetMm39,244 genscan,129 mrna,332 netHg38,241 netMm10,241 netMm39,241 refGene,185 refGene,218 refSeqComposite,819 refSeqComposite,852 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,145 xenoRefGene,178 features refGene,121 refSeqComposite,720 uniprot,694 uniprot,1805 xenoRefGene,81 fed chainHg38,610 chainMm10,610 chainMm39,610 chainNetHg38,613 chainNetMm10,612 chainNetMm39,613 netHg38,610 netMm10,610 netMm39,610 feedback refGene,47 refSeqComposite,106 uniprot,1445 uniprot,1961 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,50 gap,66 gold,49 gold,65 refSeqComposite,1167 refSeqComposite,1376 refSeqComposite,1387 refSeqComposite,1652 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files refSeqComposite,1160 refSeqComposite,1477 uniprot,1863 fill chainHg38,841 chainHg38,874 chainMm10,841 chainMm10,874 chainMm39,841 chainMm39,874 chainNetHg38,844 chainNetHg38,877 chainNetMm10,843 chainNetMm10,876 chainNetMm39,844 chainNetMm39,877 netHg38,841 netHg38,874 netMm10,841 netMm10,874 netMm39,841 netMm39,874 filled chainHg38,409 chainHg38,428 chainHg38,823 chainHg38,896 chainMm10,409 chainMm10,428 chainMm10,823 chainMm10,896 chainMm39,409 chainMm39,428 chainMm39,823 chainMm39,896 chainNetHg38,412 chainNetHg38,431 chainNetHg38,826 chainNetHg38,899 chainNetMm10,411 chainNetMm10,430 chainNetMm10,825 chainNetMm10,898 chainNetMm39,412 chainNetMm39,431 chainNetMm39,826 chainNetMm39,899 netHg38,409 netHg38,428 netHg38,823 netHg38,896 netMm10,409 netMm10,428 netMm10,823 netMm10,896 netMm39,409 netMm39,428 netMm39,823 netMm39,896 filter chainHg38,373 chainMm10,373 chainMm39,373 chainNetHg38,376 chainNetMm10,375 chainNetMm39,376 genscan,82 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netHg38,373 netMm10,373 netMm39,373 uniprot,187 uniprot,664 filtered mrna,284 uniprot,1480 uniprot,1499 filtering mrna,223 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainHg38,653 chainMm10,653 chainMm39,653 chainNetHg38,656 chainNetMm10,655 chainNetMm39,656 netHg38,653 netMm10,653 netMm39,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainHg38,280 chainMm10,280 chainMm39,280 chainNetHg38,283 chainNetMm10,282 chainNetMm39,283 netHg38,280 netMm10,280 netMm39,280 finger uniprot,327 first chainHg38,781 chainMm10,781 chainMm39,781 chainNetHg38,784 chainNetMm10,783 chainNetMm39,784 netHg38,781 netMm10,781 netMm39,781 refSeqComposite,1422 uniprot,70 fish augustusGene,201 fit chainHg38,801 chainMm10,801 chainMm39,801 chainNetHg38,804 chainNetMm10,803 chainNetMm39,804 nestedRepeats,175 netHg38,801 netMm10,801 netMm39,801 refSeqComposite,391 five refSeqComposite,869 refSeqComposite,885 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,594 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainHg38,662 chainMm10,662 chainMm39,662 chainNetHg38,665 chainNetMm10,664 chainNetMm39,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,119 genscan,81 netHg38,662 netMm10,662 netMm39,662 refSeqComposite,448 refSeqComposite,1543 windowmaskerSdust,56 follows genscan,67 mrna,30 refGene,87 refSeqComposite,891 refSeqComposite,1401 xenoRefGene,47 for HLTOGAannotvHg38v1,55 HLTOGAannotvHg38v1,59 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainHg38,254 chainHg38,269 chainHg38,279 chainHg38,286 chainHg38,486 chainMm10,254 chainMm10,269 chainMm10,279 chainMm10,286 chainMm10,486 chainMm39,254 chainMm39,269 chainMm39,279 chainMm39,286 chainMm39,486 chainNetHg38,257 chainNetHg38,272 chainNetHg38,282 chainNetHg38,289 chainNetHg38,489 chainNetMm10,256 chainNetMm10,271 chainNetMm10,281 chainNetMm10,288 chainNetMm10,488 chainNetMm39,257 chainNetMm39,272 chainNetMm39,282 chainNetMm39,289 chainNetMm39,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netHg38,254 netHg38,269 netHg38,279 netHg38,286 netHg38,486 netMm10,254 netMm10,269 netMm10,279 netMm10,286 netMm10,486 netMm39,254 netMm39,269 netMm39,279 netMm39,286 netMm39,486 refGene,48 refGene,64 refGene,69 refGene,91 refGene,213 refSeqComposite,41 refSeqComposite,73 refSeqComposite,92 refSeqComposite,107 refSeqComposite,123 refSeqComposite,128 refSeqComposite,235 refSeqComposite,244 refSeqComposite,330 refSeqComposite,394 refSeqComposite,452 refSeqComposite,474 refSeqComposite,537 refSeqComposite,598 refSeqComposite,719 refSeqComposite,743 refSeqComposite,847 refSeqComposite,1178 refSeqComposite,1290 refSeqComposite,1331 refSeqComposite,1441 refSeqComposite,1520 refSeqComposite,1529 refSeqComposite,1660 refSeqComposite,1688 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 ucscToINSDC,45 ucscToRefSeq,39 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 form uniprot,1665 format chainHg38,601 chainMm10,601 chainMm39,601 chainNetHg38,604 chainNetMm10,603 chainNetMm39,604 gap,62 gold,61 netHg38,601 netMm10,601 netMm39,601 refSeqComposite,1168 refSeqComposite,1357 refSeqComposite,1377 refSeqComposite,1403 refSeqComposite,1417 refSeqComposite,1564 refSeqComposite,1578 refSeqComposite,1586 refSeqComposite,1659 formats refSeqComposite,1177 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainHg38,435 chainMm10,435 chainMm39,435 chainNetHg38,438 chainNetMm10,437 chainNetMm39,438 netHg38,435 netMm10,435 netMm39,435 found augustusGene,100 gold,137 mrna,412 refSeqComposite,1192 refSeqComposite,1390 refSeqComposite,1675 refSeqComposite,1700 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainHg38,503 chainMm10,503 chainMm39,503 chainNetHg38,506 chainNetMm10,505 chainNetMm39,506 netHg38,503 netMm10,503 netMm39,503 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from HLTOGAannotvHg38v1,21 HLTOGAannotvHg38v1,94 HLTOGAannotvHg38v1,330 augustusGene,19 chainHg38,173 chainHg38,298 chainHg38,555 chainHg38,577 chainHg38,758 chainHg38,931 chainHg38,963 chainMm10,173 chainMm10,298 chainMm10,555 chainMm10,577 chainMm10,758 chainMm10,931 chainMm10,963 chainMm39,173 chainMm39,298 chainMm39,555 chainMm39,577 chainMm39,758 chainMm39,931 chainMm39,963 chainNetHg38,176 chainNetHg38,301 chainNetHg38,558 chainNetHg38,580 chainNetHg38,761 chainNetHg38,934 chainNetHg38,966 chainNetMm10,175 chainNetMm10,300 chainNetMm10,557 chainNetMm10,579 chainNetMm10,760 chainNetMm10,933 chainNetMm10,965 chainNetMm39,176 chainNetMm39,301 chainNetMm39,558 chainNetMm39,580 chainNetMm39,761 chainNetMm39,934 chainNetMm39,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 gap,47 genscan,15 gold,3 gold,46 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netHg38,173 netHg38,298 netHg38,555 netHg38,577 netHg38,758 netHg38,931 netHg38,963 netMm10,173 netMm10,298 netMm10,555 netMm10,577 netMm10,758 netMm10,931 netMm10,963 netMm39,173 netMm39,298 netMm39,555 netMm39,577 netMm39,758 netMm39,931 netMm39,963 refGene,28 refGene,205 refGene,324 refSeqComposite,5 refSeqComposite,25 refSeqComposite,288 refSeqComposite,294 refSeqComposite,422 refSeqComposite,482 refSeqComposite,839 refSeqComposite,1099 refSeqComposite,1154 refSeqComposite,1163 refSeqComposite,1327 refSeqComposite,1482 refSeqComposite,1510 refSeqComposite,1523 refSeqComposite,1571 refSeqComposite,1592 refSeqComposite,1606 refSeqComposite,1713 rmsk,86 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainHg38,235 chainHg38,379 chainMm10,235 chainMm10,379 chainMm39,235 chainMm39,379 chainNetHg38,238 chainNetHg38,382 chainNetMm10,237 chainNetMm10,381 chainNetMm39,238 chainNetMm39,382 nestedRepeats,118 netHg38,235 netHg38,379 netMm10,235 netMm10,379 netMm39,235 netMm39,379 rmsk,140 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,265 functional HLTOGAannotvHg38v1,162 HLTOGAannotvHg38v1,192 HLTOGAannotvHg38v1,269 HLTOGAannotvHg38v1,292 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 gc5BaseBw,20 microsat,115 refSeqComposite,900 refSeqComposite,952 refSeqComposite,1076 simpleRepeat,75 g-31-125100-114 chainHg38,670 chainMm10,670 chainMm39,670 chainNetHg38,673 chainNetMm10,672 chainNetMm39,673 netHg38,670 netMm10,670 netMm39,670 galgal6 HLTOGAannotvHg38v1,58 gambiae augustusGene,219 gap chainHg38,76 chainHg38,86 chainHg38,185 chainHg38,472 chainHg38,484 chainHg38,507 chainHg38,525 chainHg38,540 chainHg38,557 chainHg38,694 chainHg38,825 chainMm10,76 chainMm10,86 chainMm10,185 chainMm10,472 chainMm10,484 chainMm10,507 chainMm10,525 chainMm10,540 chainMm10,557 chainMm10,694 chainMm10,825 chainMm39,76 chainMm39,86 chainMm39,185 chainMm39,472 chainMm39,484 chainMm39,507 chainMm39,525 chainMm39,540 chainMm39,557 chainMm39,694 chainMm39,825 chainNetHg38,79 chainNetHg38,89 chainNetHg38,188 chainNetHg38,475 chainNetHg38,487 chainNetHg38,510 chainNetHg38,528 chainNetHg38,543 chainNetHg38,560 chainNetHg38,697 chainNetHg38,828 chainNetMm10,78 chainNetMm10,88 chainNetMm10,187 chainNetMm10,474 chainNetMm10,486 chainNetMm10,509 chainNetMm10,527 chainNetMm10,542 chainNetMm10,559 chainNetMm10,696 chainNetMm10,827 chainNetMm39,79 chainNetMm39,89 chainNetMm39,188 chainNetMm39,475 chainNetMm39,487 chainNetMm39,510 chainNetMm39,528 chainNetMm39,543 chainNetMm39,560 chainNetMm39,697 chainNetMm39,828 gap,1 gap,2 gap,90 gap,101 gap,114 mrna,366 netHg38,76 netHg38,86 netHg38,185 netHg38,472 netHg38,484 netHg38,507 netHg38,525 netHg38,540 netHg38,557 netHg38,694 netHg38,825 netMm10,76 netMm10,86 netMm10,185 netMm10,472 netMm10,484 netMm10,507 netMm10,525 netMm10,540 netMm10,557 netMm10,694 netMm10,825 netMm39,76 netMm39,86 netMm39,185 netMm39,472 netMm39,484 netMm39,507 netMm39,525 netMm39,540 netMm39,557 netMm39,694 netMm39,825 refSeqComposite,926 refSeqComposite,959 refSeqComposite,1015 refSeqComposite,1017 gapless chainHg38,637 chainMm10,637 chainMm39,637 chainNetHg38,640 chainNetMm10,639 chainNetMm39,640 netHg38,637 netMm10,637 netMm39,637 gaps HLTOGAannotvHg38v1,210 chainHg38,82 chainHg38,93 chainHg38,104 chainHg38,138 chainHg38,162 chainHg38,207 chainHg38,218 chainHg38,399 chainHg38,421 chainHg38,448 chainHg38,880 chainHg38,886 chainMm10,82 chainMm10,93 chainMm10,104 chainMm10,138 chainMm10,162 chainMm10,207 chainMm10,218 chainMm10,399 chainMm10,421 chainMm10,448 chainMm10,880 chainMm10,886 chainMm39,82 chainMm39,93 chainMm39,104 chainMm39,138 chainMm39,162 chainMm39,207 chainMm39,218 chainMm39,399 chainMm39,421 chainMm39,448 chainMm39,880 chainMm39,886 chainNetHg38,85 chainNetHg38,96 chainNetHg38,107 chainNetHg38,141 chainNetHg38,165 chainNetHg38,210 chainNetHg38,221 chainNetHg38,402 chainNetHg38,424 chainNetHg38,451 chainNetHg38,883 chainNetHg38,889 chainNetMm10,84 chainNetMm10,95 chainNetMm10,106 chainNetMm10,140 chainNetMm10,164 chainNetMm10,209 chainNetMm10,220 chainNetMm10,401 chainNetMm10,423 chainNetMm10,450 chainNetMm10,882 chainNetMm10,888 chainNetMm39,85 chainNetMm39,96 chainNetMm39,107 chainNetMm39,141 chainNetMm39,165 chainNetMm39,210 chainNetMm39,221 chainNetMm39,402 chainNetMm39,424 chainNetMm39,451 chainNetMm39,883 chainNetMm39,889 gap,12 gap,42 gap,67 gap,123 gap,125 gap,138 gold,95 netHg38,82 netHg38,93 netHg38,104 netHg38,138 netHg38,162 netHg38,207 netHg38,218 netHg38,399 netHg38,421 netHg38,448 netHg38,880 netHg38,886 netMm10,82 netMm10,93 netMm10,104 netMm10,138 netMm10,162 netMm10,207 netMm10,218 netMm10,399 netMm10,421 netMm10,448 netMm10,880 netMm10,886 netMm39,82 netMm39,93 netMm39,104 netMm39,138 netMm39,162 netMm39,207 netMm39,218 netMm39,399 netMm39,421 netMm39,448 netMm39,880 netMm39,886 refSeqComposite,929 refSeqComposite,1020 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb refSeqComposite,1548 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 uniprot,376 gencode uniprot,730 gene HLTOGAannotvHg38v1,13 HLTOGAannotvHg38v1,30 HLTOGAannotvHg38v1,47 HLTOGAannotvHg38v1,357 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refGene,13 refGene,49 refGene,75 refGene,92 refGene,146 refGene,161 refGene,166 refGene,194 refGene,223 refSeqComposite,9 refSeqComposite,108 refSeqComposite,134 refSeqComposite,410 refSeqComposite,540 refSeqComposite,558 refSeqComposite,599 refSeqComposite,767 refSeqComposite,785 refSeqComposite,797 refSeqComposite,828 refSeqComposite,857 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-inactivating HLTOGAannotvHg38v1,156 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred refSeqComposite,1173 refSeqComposite,1402 refSeqComposite,1577 genepredtogtf refSeqComposite,1589 refSeqComposite,1612 refSeqComposite,1619 generally rmsk,72 uniprot,248 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 nestedRepeats,282 refGene,328 refSeqComposite,481 refSeqComposite,1199 refSeqComposite,1715 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes HLTOGAannotvHg38v1,11 HLTOGAannotvHg38v1,36 HLTOGAannotvHg38v1,101 augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 genscan,2 genscan,6 genscan,59 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refGene,11 refGene,18 refGene,26 refGene,79 refGene,232 refGene,240 refGene,251 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,23 refSeqComposite,138 refSeqComposite,237 refSeqComposite,431 refSeqComposite,506 refSeqComposite,1211 refSeqComposite,1222 simpleRepeat,41 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome HLTOGAannotvHg38v1,22 HLTOGAannotvHg38v1,64 HLTOGAannotvHg38v1,71 augustusGene,31 chainHg38,19 chainHg38,73 chainHg38,202 chainHg38,275 chainHg38,288 chainHg38,779 chainHg38,1100 chainMm10,19 chainMm10,73 chainMm10,202 chainMm10,275 chainMm10,288 chainMm10,779 chainMm10,1100 chainMm39,19 chainMm39,73 chainMm39,202 chainMm39,275 chainMm39,288 chainMm39,779 chainMm39,1100 chainNetHg38,22 chainNetHg38,76 chainNetHg38,205 chainNetHg38,278 chainNetHg38,291 chainNetHg38,782 chainNetHg38,1103 chainNetMm10,21 chainNetMm10,75 chainNetMm10,204 chainNetMm10,277 chainNetMm10,290 chainNetMm10,781 chainNetMm10,1102 chainNetMm39,22 chainNetMm39,76 chainNetMm39,205 chainNetMm39,278 chainNetMm39,291 chainNetMm39,782 chainNetMm39,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 gap,18 gap,20 gold,20 gold,22 gold,150 mrna,23 mrna,391 mrna,521 nestedRepeats,405 netHg38,19 netHg38,73 netHg38,202 netHg38,275 netHg38,288 netHg38,779 netHg38,1100 netMm10,19 netMm10,73 netMm10,202 netMm10,275 netMm10,288 netMm10,779 netMm10,1100 netMm39,19 netMm39,73 netMm39,202 netMm39,275 netMm39,288 netMm39,779 netMm39,1100 refGene,263 refGene,347 refSeqComposite,56 refSeqComposite,290 refSeqComposite,298 refSeqComposite,307 refSeqComposite,325 refSeqComposite,369 refSeqComposite,442 refSeqComposite,464 refSeqComposite,496 refSeqComposite,877 refSeqComposite,924 refSeqComposite,974 refSeqComposite,1060 refSeqComposite,1073 refSeqComposite,1107 refSeqComposite,1120 refSeqComposite,1182 refSeqComposite,1231 refSeqComposite,1445 refSeqComposite,1734 rmsk,428 ucscToINSDC,18 ucscToRefSeq,13 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,223 xenoRefGene,306 genome-wide refSeqComposite,1497 genome.bed uniprot,1935 uniprot,1937 genomes chainHg38,25 chainHg38,582 chainHg38,1062 chainMm10,25 chainMm10,582 chainMm10,1062 chainMm39,25 chainMm39,582 chainMm39,1062 chainNetHg38,28 chainNetHg38,585 chainNetHg38,1065 chainNetMm10,27 chainNetMm10,584 chainNetMm10,1064 chainNetMm39,28 chainNetMm39,585 chainNetMm39,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netHg38,25 netHg38,582 netHg38,1062 netMm10,25 netMm10,582 netMm10,1062 netMm39,25 netMm39,582 netMm39,1062 refGene,416 refSeqComposite,569 refSeqComposite,1803 rmsk,392 rmsk,406 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,375 genomic HLTOGAannotvHg38v1,122 chainHg38,491 chainHg38,1014 chainHg38,1030 chainMm10,491 chainMm10,1014 chainMm10,1030 chainMm39,491 chainMm39,1014 chainMm39,1030 chainNetHg38,494 chainNetHg38,1017 chainNetHg38,1033 chainNetMm10,493 chainNetMm10,1016 chainNetMm10,1032 chainNetMm39,494 chainNetMm39,1017 chainNetMm39,1033 genscan,92 genscan,218 mrna,343 mrna,433 netHg38,491 netHg38,1014 netHg38,1030 netMm10,491 netMm10,1014 netMm10,1030 netMm39,491 netMm39,1014 netMm39,1030 refGene,202 refGene,313 refSeqComposite,836 refSeqComposite,904 refSeqComposite,928 refSeqComposite,1019 refSeqComposite,1077 refSeqComposite,1281 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,162 xenoRefGene,273 genomics chainHg38,11 chainMm10,11 chainMm39,11 chainNetHg38,14 chainNetHg38Viewchain,12 chainNetHg38Viewnet,12 chainNetMm10,13 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 chainNetMm39,14 chainNetMm39Viewchain,12 chainNetMm39Viewnet,12 netHg38,11 netMm10,11 netMm39,11 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 gff refSeqComposite,1166 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 github.com HLTOGAannotvHg38v1,331 given refSeqComposite,1537 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,374 go genscan,113 mrna,351 mrna,374 refGene,219 refSeqComposite,853 uniprot,1412 xenoRefGene,179 gold gold,90 gold,104 goldenpath uniprot,1907 gorgor6 refSeqComposite,1549 refSeqComposite,1613 uniprot,1816 gorgor6.fa windowmaskerSdust,62 windowmaskerSdust,71 gorilla chainHg38,72 chainHg38,98 chainHg38,155 chainHg38,201 chainHg38,267 chainHg38,274 chainHg38,573 chainHg38,625 chainMm10,72 chainMm10,98 chainMm10,155 chainMm10,201 chainMm10,267 chainMm10,274 chainMm10,573 chainMm10,625 chainMm39,72 chainMm39,98 chainMm39,155 chainMm39,201 chainMm39,267 chainMm39,274 chainMm39,573 chainMm39,625 chainNetHg38,75 chainNetHg38,101 chainNetHg38,158 chainNetHg38,204 chainNetHg38,270 chainNetHg38,277 chainNetHg38,576 chainNetHg38,628 chainNetMm10,74 chainNetMm10,100 chainNetMm10,157 chainNetMm10,203 chainNetMm10,269 chainNetMm10,276 chainNetMm10,575 chainNetMm10,627 chainNetMm39,75 chainNetMm39,101 chainNetMm39,158 chainNetMm39,204 chainNetMm39,270 chainNetMm39,277 chainNetMm39,576 chainNetMm39,628 gap,17 gold,19 mrna,1 mrna,3 mrna,17 mrna,385 netHg38,72 netHg38,98 netHg38,155 netHg38,201 netHg38,267 netHg38,274 netHg38,573 netHg38,625 netMm10,72 netMm10,98 netMm10,155 netMm10,201 netMm10,267 netMm10,274 netMm10,573 netMm10,625 netMm39,72 netMm39,98 netMm39,155 netMm39,201 netMm39,267 netMm39,274 netMm39,573 netMm39,625 refGene,22 refGene,262 refSeqComposite,19 refSeqComposite,441 refSeqComposite,462 refSeqComposite,495 refSeqComposite,1230 xenoRefGene,23 xenoRefGene,222 gr refGene,361 refSeqComposite,1748 xenoRefGene,320 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainHg38,438 chainMm10,438 chainMm39,438 chainNetHg38,441 chainNetMm10,440 chainNetMm39,441 gold,129 netHg38,438 netMm10,438 netMm39,438 rmsk,211 grch38 chainHg38,6 chainHg38,68 chainHg38,302 chainNetHg38,7 chainNetHg38,71 chainNetHg38,305 chainNetHg38Viewchain,5 chainNetHg38Viewnet,5 netHg38,6 netHg38,68 netHg38,302 grcm38 chainMm10,6 chainMm10,68 chainMm10,302 chainNetMm10,6 chainNetMm10,70 chainNetMm10,304 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,302 grcm39 chainMm39,6 chainMm39,68 chainMm39,302 chainNetMm39,7 chainNetMm39,71 chainNetMm39,305 chainNetMm39Viewchain,5 chainNetMm39Viewnet,5 netMm39,6 netMm39,68 netMm39,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainHg38,629 chainMm10,629 chainMm39,629 chainNetHg38,632 chainNetMm10,631 chainNetMm39,632 netHg38,629 netMm10,629 netMm39,629 refSeqComposite,387 refSeqComposite,447 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 gtf refSeqComposite,1563 refSeqComposite,1573 refSeqComposite,1585 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainHg38,933 chainHg38,1090 chainMm10,933 chainMm10,1090 chainMm39,933 chainMm39,1090 chainNetHg38,936 chainNetHg38,1093 chainNetMm10,935 chainNetMm10,1092 chainNetMm39,936 chainNetMm39,1093 netHg38,933 netHg38,1090 netMm10,933 netMm10,1090 netMm39,933 netMm39,1090 harris chainHg38,1007 chainMm10,1007 chainMm39,1007 chainNetHg38,1010 chainNetMm10,1009 chainNetMm39,1010 netHg38,1007 netMm10,1007 netMm39,1007 hart refGene,372 refSeqComposite,1759 xenoRefGene,331 has mrna,60 nestedRepeats,246 refGene,106 refSeqComposite,613 refSeqComposite,634 refSeqComposite,670 refSeqComposite,682 refSeqComposite,695 refSeqComposite,814 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,66 haussler augustusGene,292 chainHg38,968 chainHg38,1048 chainHg38,1092 chainMm10,968 chainMm10,1048 chainMm10,1092 chainMm39,968 chainMm39,1048 chainMm39,1092 chainNetHg38,971 chainNetHg38,1051 chainNetHg38,1095 chainNetMm10,970 chainNetMm10,1050 chainNetMm10,1094 chainNetMm39,971 chainNetMm39,1051 chainNetMm39,1095 netHg38,968 netHg38,1048 netHg38,1092 netMm10,968 netMm10,1048 netMm10,1092 netMm39,968 netMm39,1048 netMm39,1092 have chainHg38,567 chainMm10,567 chainMm39,567 chainNetHg38,570 chainNetMm10,569 chainNetMm39,570 nestedRepeats,88 netHg38,567 netMm10,567 netMm39,567 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,406 mrna,415 refGene,286 refGene,295 refSeqComposite,1254 refSeqComposite,1263 xenoRefGene,246 xenoRefGene,255 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 gc5BaseBw,61 refGene,65 refSeqComposite,124 helpful mrna,88 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here refSeqComposite,990 refSeqComposite,1193 refSeqComposite,1464 refSeqComposite,1486 refSeqComposite,1680 rmsk,127 uniprot,1795 hg.conf refSeqComposite,1635 hg19 refSeqComposite,570 uniprot,847 uniprot,860 hg38 HLTOGAannotvHg38v1,3 HLTOGAannotvHg38v1,8 HLTOGAannotvHg38v1,54 chainHg38,7 chainHg38,69 chainHg38,303 chainNetHg38,8 chainNetHg38,72 chainNetHg38,306 chainNetHg38Viewchain,6 chainNetHg38Viewnet,6 netHg38,7 netHg38,69 netHg38,303 refSeqComposite,514 refSeqComposite,572 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1547 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,546 hgvs refSeqComposite,899 refSeqComposite,912 refSeqComposite,951 refSeqComposite,980 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1070 refSeqComposite,1090 hiatt refGene,362 refSeqComposite,1749 xenoRefGene,321 hidden augustusGene,324 uniprot,182 uniprot,223 hide refGene,230 refSeqComposite,174 uniprot,659 uniprot,667 xenoRefGene,190 hierarchy chainHg38,816 chainMm10,816 chainMm39,816 chainNetHg38,819 chainNetMm10,818 chainNetMm39,819 netHg38,816 netMm10,816 netMm39,816 high gc5BaseBw,29 higher chainHg38,848 chainMm10,848 chainMm39,848 chainNetHg38,851 chainNetMm10,850 chainNetMm39,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netHg38,848 netMm10,848 netMm39,848 rmsk,230 higher-level chainHg38,865 chainMm10,865 chainMm39,865 chainNetHg38,868 chainNetMm10,867 chainNetMm39,868 netHg38,865 netMm10,865 netMm39,865 higher-scoring chainHg38,809 chainHg38,828 chainMm10,809 chainMm10,828 chainMm39,809 chainMm39,828 chainNetHg38,812 chainNetHg38,831 chainNetMm10,811 chainNetMm10,830 chainNetMm39,812 chainNetMm39,831 netHg38,809 netHg38,828 netMm10,809 netMm10,828 netMm39,809 netMm39,828 highest mrna,408 refGene,288 refSeqComposite,1256 uniprot,948 uniprot,1113 xenoRefGene,248 highest-scoring chainHg38,390 chainHg38,775 chainMm10,390 chainMm10,775 chainMm39,390 chainMm39,775 chainNetHg38,393 chainNetHg38,778 chainNetMm10,392 chainNetMm10,777 chainNetMm39,393 chainNetMm39,778 netHg38,390 netHg38,775 netMm10,390 netMm10,775 netMm39,390 netMm39,775 highlight gc5BaseBw,49 mrna,279 highlighted mrna,249 mrna,267 uniprot,580 highly microsat,40 hilgers HLTOGAannotvHg38v1,352 hiller HLTOGAannotvHg38v1,322 hillerlab HLTOGAannotvHg38v1,332 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainHg38,1044 chainMm10,1044 chainMm39,1044 chainNetHg38,1047 chainNetMm10,1046 chainNetMm39,1047 netHg38,1044 netMm10,1044 netMm39,1044 hiram gc5BaseBw,82 ucscToINSDC,51 ucscToRefSeq,45 his chainHg38,942 chainMm10,942 chainMm39,942 chainNetHg38,945 chainNetMm10,944 chainNetMm39,945 netHg38,942 netMm10,942 netMm39,942 homology-based HLTOGAannotvHg38v1,26 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainHg38,921 chainMm10,921 chainMm39,921 chainNetHg38,924 chainNetMm10,923 chainNetMm39,924 netHg38,921 netMm10,921 netMm39,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainHg38,876 chainHg38,893 chainMm10,876 chainMm10,893 chainMm39,876 chainMm39,893 chainNetHg38,879 chainNetHg38,896 chainNetMm10,878 chainNetMm10,895 chainNetMm39,879 chainNetMm39,896 netHg38,876 netHg38,893 netMm10,876 netMm10,893 netMm39,876 netMm39,893 refSeqComposite,96 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 hox refSeqComposite,414 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1546 rmsk,355 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human HLTOGAannotvHg38v1,7 HLTOGAannotvHg38v1,53 augustusGene,205 augustusGene,210 augustusGene,276 chainHg38,1 chainHg38,3 chainHg38,65 chainHg38,96 chainHg38,148 chainHg38,266 chainHg38,291 chainHg38,572 chainHg38,620 chainHg38,1061 chainMm10,1061 chainMm39,1061 chainNetHg38,1 chainNetHg38,4 chainNetHg38,68 chainNetHg38,99 chainNetHg38,151 chainNetHg38,269 chainNetHg38,294 chainNetHg38,575 chainNetHg38,623 chainNetHg38,1064 chainNetHg38Viewchain,2 chainNetHg38Viewnet,2 chainNetMm10,1063 chainNetMm39,1064 genscan,217 nestedRepeats,404 netHg38,1 netHg38,3 netHg38,65 netHg38,96 netHg38,148 netHg38,266 netHg38,291 netHg38,572 netHg38,620 netHg38,1061 netMm10,1061 netMm39,1061 refSeqComposite,245 refSeqComposite,297 refSeqComposite,557 refSeqComposite,568 refSeqComposite,1072 rmsk,427 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainHg38,1096 chainMm10,1096 chainMm39,1096 chainNetHg38,1099 chainNetMm10,1098 chainNetMm39,1099 netHg38,1096 netMm10,1096 netMm39,1096 i mrna,467 mrna,491 icon refSeqComposite,750 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1129 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainHg38,937 chainMm10,937 chainMm39,937 chainNetHg38,940 chainNetMm10,939 chainNetMm39,940 netHg38,937 netMm10,937 netMm39,937 refGene,292 refSeqComposite,1260 xenoRefGene,252 identifier refSeqComposite,781 refSeqComposite,800 identifiers ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 refGene,290 refGene,298 refGene,310 refSeqComposite,1258 refSeqComposite,1266 refSeqComposite,1278 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,76 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 refGene,243 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,203 ignored refSeqComposite,1451 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implements HLTOGAannotvHg38v1,73 important uniprot,900 improve augustusGene,302 improved chainHg38,1010 chainMm10,1010 chainMm39,1010 chainNetHg38,1013 chainNetMm10,1012 chainNetMm39,1013 netHg38,1010 netMm10,1010 netMm39,1010 in HLTOGAannotvHg38v1,119 HLTOGAannotvHg38v1,124 HLTOGAannotvHg38v1,137 HLTOGAannotvHg38v1,173 HLTOGAannotvHg38v1,220 HLTOGAannotvHg38v1,242 augustusGene,101 chainHg38,31 chainHg38,94 chainHg38,114 chainHg38,146 chainHg38,153 chainHg38,167 chainHg38,186 chainHg38,189 chainHg38,228 chainHg38,249 chainHg38,294 chainHg38,327 chainHg38,357 chainHg38,369 chainHg38,378 chainHg38,396 chainHg38,401 chainHg38,410 chainHg38,422 chainHg38,436 chainHg38,478 chainHg38,495 chainHg38,526 chainHg38,544 chainHg38,558 chainHg38,593 chainHg38,689 chainHg38,777 chainHg38,818 chainHg38,826 chainHg38,842 chainHg38,875 chainHg38,887 chainHg38,1057 chainMm10,31 chainMm10,94 chainMm10,114 chainMm10,146 chainMm10,153 chainMm10,167 chainMm10,186 chainMm10,189 chainMm10,228 chainMm10,249 chainMm10,294 chainMm10,327 chainMm10,357 chainMm10,369 chainMm10,378 chainMm10,396 chainMm10,401 chainMm10,410 chainMm10,422 chainMm10,436 chainMm10,478 chainMm10,495 chainMm10,526 chainMm10,544 chainMm10,558 chainMm10,593 chainMm10,689 chainMm10,777 chainMm10,818 chainMm10,826 chainMm10,842 chainMm10,875 chainMm10,887 chainMm10,1057 chainMm39,31 chainMm39,94 chainMm39,114 chainMm39,146 chainMm39,153 chainMm39,167 chainMm39,186 chainMm39,189 chainMm39,228 chainMm39,249 chainMm39,294 chainMm39,327 chainMm39,357 chainMm39,369 chainMm39,378 chainMm39,396 chainMm39,401 chainMm39,410 chainMm39,422 chainMm39,436 chainMm39,478 chainMm39,495 chainMm39,526 chainMm39,544 chainMm39,558 chainMm39,593 chainMm39,689 chainMm39,777 chainMm39,818 chainMm39,826 chainMm39,842 chainMm39,875 chainMm39,887 chainMm39,1057 chainNetHg38,34 chainNetHg38,97 chainNetHg38,117 chainNetHg38,149 chainNetHg38,156 chainNetHg38,170 chainNetHg38,189 chainNetHg38,192 chainNetHg38,231 chainNetHg38,252 chainNetHg38,297 chainNetHg38,330 chainNetHg38,360 chainNetHg38,372 chainNetHg38,381 chainNetHg38,399 chainNetHg38,404 chainNetHg38,413 chainNetHg38,425 chainNetHg38,439 chainNetHg38,481 chainNetHg38,498 chainNetHg38,529 chainNetHg38,547 chainNetHg38,561 chainNetHg38,596 chainNetHg38,692 chainNetHg38,780 chainNetHg38,821 chainNetHg38,829 chainNetHg38,845 chainNetHg38,878 chainNetHg38,890 chainNetHg38,1060 chainNetMm10,33 chainNetMm10,96 chainNetMm10,116 chainNetMm10,148 chainNetMm10,155 chainNetMm10,169 chainNetMm10,188 chainNetMm10,191 chainNetMm10,230 chainNetMm10,251 chainNetMm10,296 chainNetMm10,329 chainNetMm10,359 chainNetMm10,371 chainNetMm10,380 chainNetMm10,398 chainNetMm10,403 chainNetMm10,412 chainNetMm10,424 chainNetMm10,438 chainNetMm10,480 chainNetMm10,497 chainNetMm10,528 chainNetMm10,546 chainNetMm10,560 chainNetMm10,595 chainNetMm10,691 chainNetMm10,779 chainNetMm10,820 chainNetMm10,828 chainNetMm10,844 chainNetMm10,877 chainNetMm10,889 chainNetMm10,1059 chainNetMm39,34 chainNetMm39,97 chainNetMm39,117 chainNetMm39,149 chainNetMm39,156 chainNetMm39,170 chainNetMm39,189 chainNetMm39,192 chainNetMm39,231 chainNetMm39,252 chainNetMm39,297 chainNetMm39,330 chainNetMm39,360 chainNetMm39,372 chainNetMm39,381 chainNetMm39,399 chainNetMm39,404 chainNetMm39,413 chainNetMm39,425 chainNetMm39,439 chainNetMm39,481 chainNetMm39,498 chainNetMm39,529 chainNetMm39,547 chainNetMm39,561 chainNetMm39,596 chainNetMm39,692 chainNetMm39,780 chainNetMm39,821 chainNetMm39,829 chainNetMm39,845 chainNetMm39,878 chainNetMm39,890 chainNetMm39,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 gap,13 gap,25 gap,43 gap,73 gap,128 gap,141 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,27 gold,66 gold,127 gold,138 gold,146 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netHg38,31 netHg38,94 netHg38,114 netHg38,146 netHg38,153 netHg38,167 netHg38,186 netHg38,189 netHg38,228 netHg38,249 netHg38,294 netHg38,327 netHg38,357 netHg38,369 netHg38,378 netHg38,396 netHg38,401 netHg38,410 netHg38,422 netHg38,436 netHg38,478 netHg38,495 netHg38,526 netHg38,544 netHg38,558 netHg38,593 netHg38,689 netHg38,777 netHg38,818 netHg38,826 netHg38,842 netHg38,875 netHg38,887 netHg38,1057 netMm10,31 netMm10,94 netMm10,114 netMm10,146 netMm10,153 netMm10,167 netMm10,186 netMm10,189 netMm10,228 netMm10,249 netMm10,294 netMm10,327 netMm10,357 netMm10,369 netMm10,378 netMm10,396 netMm10,401 netMm10,410 netMm10,422 netMm10,436 netMm10,478 netMm10,495 netMm10,526 netMm10,544 netMm10,558 netMm10,593 netMm10,689 netMm10,777 netMm10,818 netMm10,826 netMm10,842 netMm10,875 netMm10,887 netMm10,1057 netMm39,31 netMm39,94 netMm39,114 netMm39,146 netMm39,153 netMm39,167 netMm39,186 netMm39,189 netMm39,228 netMm39,249 netMm39,294 netMm39,327 netMm39,357 netMm39,369 netMm39,378 netMm39,396 netMm39,401 netMm39,410 netMm39,422 netMm39,436 netMm39,478 netMm39,495 netMm39,526 netMm39,544 netMm39,558 netMm39,593 netMm39,689 netMm39,777 netMm39,818 netMm39,826 netMm39,842 netMm39,875 netMm39,887 netMm39,1057 refGene,281 refSeqComposite,61 refSeqComposite,277 refSeqComposite,396 refSeqComposite,756 refSeqComposite,988 refSeqComposite,1035 refSeqComposite,1062 refSeqComposite,1139 refSeqComposite,1165 refSeqComposite,1180 refSeqComposite,1249 refSeqComposite,1296 refSeqComposite,1340 refSeqComposite,1355 refSeqComposite,1364 refSeqComposite,1374 refSeqComposite,1384 refSeqComposite,1443 refSeqComposite,1452 refSeqComposite,1467 refSeqComposite,1475 refSeqComposite,1535 refSeqComposite,1620 refSeqComposite,1657 refSeqComposite,1663 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,241 inactivating HLTOGAannotvHg38v1,185 HLTOGAannotvHg38v1,232 HLTOGAannotvHg38v1,240 HLTOGAannotvHg38v1,275 HLTOGAannotvHg38v1,305 include mrna,76 mrna,281 mrna,305 refSeqComposite,187 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes refSeqComposite,216 refSeqComposite,262 refSeqComposite,346 refSeqComposite,648 rmsk,198 uniprot,1587 including refSeqComposite,795 rmsk,188 uniprot,1700 inclusion refSeqComposite,395 inconsistency refSeqComposite,873 incorporate refSeqComposite,660 incorrect uniprot,1361 indels microsat,74 independently refSeqComposite,293 indexing refSeqComposite,1462 indicate chainHg38,137 chainHg38,243 chainMm10,137 chainMm10,243 chainMm39,137 chainMm39,243 chainNetHg38,140 chainNetHg38,246 chainNetMm10,139 chainNetMm10,245 chainNetMm39,140 chainNetMm39,246 mrna,49 nestedRepeats,153 netHg38,137 netHg38,243 netMm10,137 netMm10,243 netMm39,137 netMm39,243 indicates refGene,98 refSeqComposite,605 xenoRefGene,58 individual chainHg38,240 chainHg38,493 chainMm10,240 chainMm10,493 chainMm39,240 chainMm39,493 chainNetHg38,243 chainNetHg38,496 chainNetMm10,242 chainNetMm10,495 chainNetMm39,243 chainNetMm39,496 netHg38,240 netHg38,493 netMm10,240 netMm10,493 netMm39,240 netMm39,493 refSeqComposite,676 refSeqComposite,701 refSeqComposite,745 refSeqComposite,1490 infer HLTOGAannotvHg38v1,19 inference HLTOGAannotvHg38v1,361 inferring HLTOGAannotvHg38v1,32 information HLTOGAannotvHg38v1,300 augustusGene,36 chainHg38,456 chainHg38,469 chainHg38,475 chainHg38,843 chainMm10,456 chainMm10,469 chainMm10,475 chainMm10,843 chainMm39,456 chainMm39,469 chainMm39,475 chainMm39,843 chainNetHg38,459 chainNetHg38,472 chainNetHg38,478 chainNetHg38,846 chainNetMm10,458 chainNetMm10,471 chainNetMm10,477 chainNetMm10,845 chainNetMm39,459 chainNetMm39,472 chainNetMm39,478 chainNetMm39,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 gap,34 gc5BaseBw,55 genscan,51 genscan,126 gold,36 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netHg38,456 netHg38,469 netHg38,475 netHg38,843 netMm10,456 netMm10,469 netMm10,475 netMm10,843 netMm39,456 netMm39,469 netMm39,475 netMm39,843 refGene,71 refGene,215 refSeqComposite,130 refSeqComposite,665 refSeqComposite,849 refSeqComposite,1184 refSeqComposite,1379 refSeqComposite,1383 rmsk,89 rmsk,324 simpleRepeat,58 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,175 initial refSeqComposite,679 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input HLTOGAannotvHg38v1,43 uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainHg38,569 chainHg38,899 chainMm10,569 chainMm10,899 chainMm39,569 chainMm39,899 chainNetHg38,572 chainNetHg38,902 chainNetMm10,571 chainNetMm10,901 chainNetMm39,572 chainNetMm39,902 netHg38,569 netHg38,899 netMm10,569 netMm10,899 netMm39,569 netMm39,899 insertion chainHg38,152 chainMm10,152 chainMm39,152 chainNetHg38,155 chainNetMm10,154 chainNetMm39,155 mrna,378 netHg38,152 netMm10,152 netMm39,152 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,945 inside uniprot,560 inspection uniprot,1653 instead refGene,158 refSeqComposite,782 xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions uniprot,1785 intact HLTOGAannotvHg38v1,38 HLTOGAannotvHg38v1,143 HLTOGAannotvHg38v1,166 integrates HLTOGAannotvHg38v1,29 integrating HLTOGAannotvHg38v1,356 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 refSeqComposite,1312 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 refSeqComposite,1303 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic HLTOGAannotvHg38v1,84 genscan,47 international mrna,452 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainHg38,599 chainHg38,611 chainHg38,627 chainHg38,802 chainMm10,599 chainMm10,611 chainMm10,627 chainMm10,802 chainMm39,599 chainMm39,611 chainMm39,627 chainMm39,802 chainNetHg38,602 chainNetHg38,614 chainNetHg38,630 chainNetHg38,805 chainNetMm10,601 chainNetMm10,613 chainNetMm10,629 chainNetMm10,804 chainNetMm39,602 chainNetMm39,614 chainNetMm39,630 chainNetMm39,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,198 netHg38,599 netHg38,611 netHg38,627 netHg38,802 netMm10,599 netMm10,611 netMm10,627 netMm10,802 netMm39,599 netMm39,611 netMm39,627 netMm39,802 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 intronic HLTOGAannotvHg38v1,82 introns chainHg38,56 chainMm10,56 chainMm39,56 chainNetHg38,59 chainNetMm10,58 chainNetMm39,59 genscan,45 netHg38,56 netMm10,56 netMm39,56 refSeqComposite,936 refSeqComposite,1027 inv chainHg38,531 chainMm10,531 chainMm39,531 chainNetHg38,534 chainNetMm10,533 chainNetMm39,534 netHg38,531 netMm10,531 netMm39,531 inversions chainHg38,110 chainHg38,174 chainMm10,110 chainMm10,174 chainMm39,110 chainMm39,174 chainNetHg38,113 chainNetHg38,177 chainNetMm10,112 chainNetMm10,176 chainNetMm39,113 chainNetMm39,177 netHg38,110 netHg38,174 netMm10,110 netMm10,174 netMm39,110 netMm39,174 inverted chainHg38,861 chainMm10,861 chainMm39,861 chainNetHg38,864 chainNetMm10,863 chainNetMm39,864 netHg38,861 netMm10,861 netMm39,861 invisible refSeqComposite,1034 refSeqComposite,1061 involve chainHg38,164 chainMm10,164 chainMm39,164 chainNetHg38,167 chainNetMm10,166 chainNetMm39,167 netHg38,164 netMm10,164 netMm39,164 is HLTOGAannotvHg38v1,24 HLTOGAannotvHg38v1,104 HLTOGAannotvHg38v1,135 HLTOGAannotvHg38v1,151 HLTOGAannotvHg38v1,171 HLTOGAannotvHg38v1,197 HLTOGAannotvHg38v1,218 HLTOGAannotvHg38v1,238 HLTOGAannotvHg38v1,251 HLTOGAannotvHg38v1,281 HLTOGAannotvHg38v1,287 HLTOGAannotvHg38v1,328 chainHg38,277 chainHg38,297 chainHg38,476 chainMm10,277 chainMm10,297 chainMm10,476 chainMm39,277 chainMm39,297 chainMm39,476 chainNetHg38,280 chainNetHg38,300 chainNetHg38,479 chainNetMm10,279 chainNetMm10,299 chainNetMm10,478 chainNetMm39,280 chainNetMm39,300 chainNetMm39,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,46 gap,91 gap,98 gap,106 gc5BaseBw,32 gold,45 gold,119 gold,125 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netHg38,277 netHg38,297 netHg38,476 netMm10,277 netMm10,297 netMm10,476 netMm39,277 netMm39,297 netMm39,476 refSeqComposite,146 refSeqComposite,242 refSeqComposite,316 refSeqComposite,533 refSeqComposite,563 refSeqComposite,574 refSeqComposite,710 refSeqComposite,1055 refSeqComposite,1198 refSeqComposite,1213 refSeqComposite,1429 refSeqComposite,1435 rmsk,95 rmsk,360 simpleRepeat,28 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,482 mrna,508 refGene,394 refGene,428 refSeqComposite,1781 refSeqComposite,1815 uniprot,2004 xenoRefGene,353 xenoRefGene,387 it chainHg38,89 chainHg38,276 chainHg38,530 chainHg38,542 chainMm10,89 chainMm10,276 chainMm10,530 chainMm10,542 chainMm39,89 chainMm39,276 chainMm39,530 chainMm39,542 chainNetHg38,92 chainNetHg38,279 chainNetHg38,533 chainNetHg38,545 chainNetMm10,91 chainNetMm10,278 chainNetMm10,532 chainNetMm10,544 chainNetMm39,92 chainNetMm39,279 chainNetMm39,533 chainNetMm39,545 gap,97 genscan,143 netHg38,89 netHg38,276 netHg38,530 netHg38,542 netMm10,89 netMm10,276 netMm10,530 netMm10,542 netMm39,89 netMm39,276 netMm39,530 netMm39,542 refSeqComposite,573 refSeqComposite,1299 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refGene,115 refSeqComposite,713 xenoRefGene,75 items chainHg38,494 chainMm10,494 chainMm39,494 chainNetHg38,497 chainNetMm10,496 chainNetMm39,497 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netHg38,494 netMm10,494 netMm39,494 refGene,142 refSeqComposite,763 refSeqComposite,962 refSeqComposite,1662 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 genscan,220 mrna,471 mrna,495 nestedRepeats,341 refGene,373 refSeqComposite,1760 rmsk,364 xenoRefGene,332 jan chainHg38,1103 chainMm10,1103 chainMm39,1103 chainNetHg38,1106 chainNetMm10,1105 chainNetMm39,1106 microsat,129 mrna,479 mrna,504 netHg38,1103 netMm10,1103 netMm39,1103 refGene,391 refGene,424 refSeqComposite,1778 refSeqComposite,1811 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,350 xenoRefGene,383 jebb HLTOGAannotvHg38v1,340 jim chainHg38,959 chainHg38,986 chainHg38,1004 chainMm10,959 chainMm10,986 chainMm10,1004 chainMm39,959 chainMm39,986 chainMm39,1004 chainNetHg38,962 chainNetHg38,989 chainNetHg38,1007 chainNetMm10,961 chainNetMm10,988 chainNetMm10,1006 chainNetMm39,962 chainNetMm39,989 chainNetMm39,1007 netHg38,959 netHg38,986 netHg38,1004 netMm10,959 netMm10,986 netMm10,1004 netMm39,959 netMm39,986 netMm39,1004 joined chainHg38,122 chainMm10,122 chainMm39,122 chainNetHg38,125 chainNetMm10,124 chainNetMm39,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netHg38,122 netMm10,122 netMm39,122 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1356 refSeqComposite,1360 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jun chainMm39,4 chainMm39,66 chainMm39,300 chainNetMm39,5 chainNetMm39,69 chainNetMm39,303 chainNetMm39Viewchain,3 chainNetMm39Viewnet,3 netMm39,4 netMm39,66 netMm39,300 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 k augustusGene,268 mrna,465 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,466 mrna,490 kasif genscan,193 kd refGene,359 refGene,401 refSeqComposite,1746 refSeqComposite,1788 xenoRefGene,318 xenoRefGene,360 kd-tree chainHg38,633 chainMm10,633 chainMm39,633 chainNetHg38,636 chainNetMm10,635 chainNetMm39,636 netHg38,633 netMm10,633 netMm39,633 kd-trees chainHg38,651 chainMm10,651 chainMm39,651 chainNetHg38,654 chainNetMm10,653 chainNetMm39,654 netHg38,651 netMm10,651 netMm39,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainHg38,960 chainHg38,987 chainHg38,1005 chainHg38,1040 chainHg38,1082 chainMm10,960 chainMm10,987 chainMm10,1005 chainMm10,1040 chainMm10,1082 chainMm39,960 chainMm39,987 chainMm39,1005 chainMm39,1040 chainMm39,1082 chainNetHg38,963 chainNetHg38,990 chainNetHg38,1008 chainNetHg38,1043 chainNetHg38,1085 chainNetMm10,962 chainNetMm10,989 chainNetMm10,1007 chainNetMm10,1042 chainNetMm10,1084 chainNetMm39,963 chainNetMm39,990 chainNetMm39,1008 chainNetMm39,1043 chainNetMm39,1085 mrna,514 netHg38,960 netHg38,987 netHg38,1005 netHg38,1040 netHg38,1082 netMm10,960 netMm10,987 netMm10,1005 netMm10,1040 netMm10,1082 netMm39,960 netMm39,987 netMm39,1005 netMm39,1040 netMm39,1082 refGene,340 refSeqComposite,1727 xenoRefGene,300 kept mrna,436 refGene,316 refSeqComposite,1284 xenoRefGene,276 kirilenko HLTOGAannotvHg38v1,334 km refGene,377 refSeqComposite,1764 xenoRefGene,336 known chainHg38,910 chainMm10,910 chainMm39,910 chainNetHg38,913 chainNetMm10,912 chainNetMm39,913 gold,121 netHg38,910 netMm10,910 netMm39,910 refGene,21 refSeqComposite,501 xenoRefGene,14 kontopoulos HLTOGAannotvHg38v1,350 l HLTOGAannotvHg38v1,353 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 lab HLTOGAannotvHg38v1,323 augustusGene,252 label genscan,98 refGene,139 refGene,151 refGene,174 refSeqComposite,760 refSeqComposite,772 refSeqComposite,808 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 refGene,144 refSeqComposite,765 uniprot,457 xenoRefGene,104 labels nestedRepeats,161 refGene,116 refSeqComposite,714 refSeqComposite,794 xenoRefGene,76 landrum refGene,374 refSeqComposite,1761 xenoRefGene,333 largely chainHg38,141 chainMm10,141 chainMm39,141 chainNetHg38,144 chainNetMm10,143 chainNetMm39,144 netHg38,141 netMm10,141 netMm39,141 largest chainHg38,389 chainMm10,389 chainMm39,389 chainNetHg38,392 chainNetMm10,391 chainNetMm39,392 netHg38,389 netMm10,389 netMm39,389 lastz chainHg38,586 chainHg38,759 chainHg38,908 chainMm10,586 chainMm10,759 chainMm10,908 chainMm39,586 chainMm39,759 chainMm39,908 chainNetHg38,589 chainNetHg38,762 chainNetHg38,911 chainNetMm10,588 chainNetMm10,761 chainNetMm10,910 chainNetMm39,589 chainNetMm39,762 chainNetMm39,911 netHg38,586 netHg38,759 netHg38,908 netMm10,586 netMm10,759 netMm10,908 netMm39,586 netMm39,759 netMm39,908 lavtoaxt chainHg38,604 chainMm10,604 chainMm39,604 chainNetHg38,607 chainNetMm10,606 chainNetMm39,607 netHg38,604 netMm10,604 netMm39,604 learning HLTOGAannotvHg38v1,89 least microsat,29 microsat,78 mrna,427 refGene,307 refSeqComposite,1275 xenoRefGene,267 lee uniprot,1955 left refSeqComposite,968 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refGene,271 refSeqComposite,1239 uniprot,680 xenoRefGene,231 level chainHg38,384 chainHg38,418 chainHg38,423 chainHg38,430 chainHg38,488 chainHg38,515 chainHg38,528 chainHg38,560 chainMm10,384 chainMm10,418 chainMm10,423 chainMm10,430 chainMm10,488 chainMm10,515 chainMm10,528 chainMm10,560 chainMm39,384 chainMm39,418 chainMm39,423 chainMm39,430 chainMm39,488 chainMm39,515 chainMm39,528 chainMm39,560 chainNetHg38,387 chainNetHg38,421 chainNetHg38,426 chainNetHg38,433 chainNetHg38,491 chainNetHg38,518 chainNetHg38,531 chainNetHg38,563 chainNetMm10,386 chainNetMm10,420 chainNetMm10,425 chainNetMm10,432 chainNetMm10,490 chainNetMm10,517 chainNetMm10,530 chainNetMm10,562 chainNetMm39,387 chainNetMm39,421 chainNetMm39,426 chainNetMm39,433 chainNetMm39,491 chainNetMm39,518 chainNetMm39,531 chainNetMm39,563 mrna,419 netHg38,384 netHg38,418 netHg38,423 netHg38,430 netHg38,488 netHg38,515 netHg38,528 netHg38,560 netMm10,384 netMm10,418 netMm10,423 netMm10,430 netMm10,488 netMm10,515 netMm10,528 netMm10,560 netMm39,384 netMm39,418 netMm39,423 netMm39,430 netMm39,488 netMm39,515 netMm39,528 netMm39,560 refGene,100 refGene,299 refSeqComposite,607 refSeqComposite,627 refSeqComposite,1267 rmsk,205 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refGene,109 refSeqComposite,616 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,69 light-blue uniprot,178 lighter rmsk,237 like chainHg38,47 chainHg38,55 chainMm10,47 chainMm10,55 chainMm39,47 chainMm39,55 chainNetHg38,50 chainNetHg38,58 chainNetMm10,49 chainNetMm10,57 chainNetMm39,50 chainNetMm39,58 netHg38,47 netHg38,55 netMm10,47 netMm10,55 netMm39,47 netMm39,55 refSeqComposite,82 refSeqComposite,1610 uniprot,1541 likely HLTOGAannotvHg38v1,160 augustusGene,111 microsat,17 refSeqComposite,944 line chainHg38,466 chainMm10,466 chainMm39,466 chainNetHg38,469 chainNetMm10,468 chainNetMm39,469 gap,105 gold,124 nestedRepeats,151 netHg38,466 netMm10,466 netMm39,466 refSeqComposite,999 refSeqComposite,1010 refSeqComposite,1609 rmsk,165 uniprot,1872 uniprot,1876 line-up chainHg38,533 chainMm10,533 chainMm39,533 chainNetHg38,536 chainNetMm10,535 chainNetMm39,536 netHg38,533 netMm10,533 netMm39,533 line-ups chainHg38,518 chainMm10,518 chainMm39,518 chainNetHg38,521 chainNetMm10,520 chainNetMm39,521 netHg38,518 netMm10,518 netMm39,518 lineage-specific chainHg38,934 chainMm10,934 chainMm39,934 chainNetHg38,937 chainNetMm10,936 chainNetMm39,937 netHg38,934 netMm10,934 netMm39,934 linear chainHg38,693 chainMm10,693 chainMm39,693 chainNetHg38,696 chainNetMm10,695 chainNetMm39,696 netHg38,693 netMm10,693 netMm39,693 lineargap chainHg38,699 chainMm10,699 chainMm39,699 chainNetHg38,702 chainNetMm10,701 chainNetMm39,702 netHg38,699 netMm10,699 netMm39,699 lines chainHg38,129 chainHg38,136 chainHg38,158 chainHg38,446 chainMm10,129 chainMm10,136 chainMm10,158 chainMm10,446 chainMm39,129 chainMm39,136 chainMm39,158 chainMm39,446 chainNetHg38,132 chainNetHg38,139 chainNetHg38,161 chainNetHg38,449 chainNetMm10,131 chainNetMm10,138 chainNetMm10,160 chainNetMm10,448 chainNetMm39,132 chainNetMm39,139 chainNetMm39,161 chainNetMm39,449 nestedRepeats,131 netHg38,129 netHg38,136 netHg38,158 netHg38,446 netMm10,129 netMm10,136 netMm10,158 netMm10,446 netMm39,129 netMm39,136 netMm39,158 netMm39,446 refSeqComposite,994 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1527 refSeqComposite,1642 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,468 mrna,492 lipoification uniprot,577 list mrna,155 refSeqComposite,759 refSeqComposite,1686 uniprot,979 uniprot,1165 uniprot,1831 literature refSeqComposite,282 refSeqComposite,655 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainHg38,109 chainHg38,180 chainMm10,109 chainMm10,180 chainMm39,109 chainMm39,180 chainNetHg38,112 chainNetHg38,183 chainNetMm10,111 chainNetMm10,182 chainNetMm39,112 chainNetMm39,183 nestedRepeats,98 netHg38,109 netHg38,180 netMm10,109 netMm10,180 netMm39,109 netMm39,180 refSeqComposite,1332 located simpleRepeat,21 location chainHg38,248 chainMm10,248 chainMm39,248 chainNetHg38,251 chainNetMm10,250 chainNetMm39,251 netHg38,248 netMm10,248 netMm39,248 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 uniprot,451 locus HLTOGAannotvHg38v1,123 logic mrna,233 long refSeqComposite,1023 rmsk,161 rmsk,166 longer chainHg38,81 chainMm10,81 chainMm39,81 chainNetHg38,84 chainNetMm10,83 chainNetMm39,84 netHg38,81 netMm10,81 netMm39,81 longest chainHg38,511 chainMm10,511 chainMm39,511 chainNetHg38,514 chainNetMm10,513 chainNetMm39,514 netHg38,511 netMm10,511 netMm39,511 look chainHg38,46 chainMm10,46 chainMm39,46 chainNetHg38,49 chainNetMm10,48 chainNetMm39,49 netHg38,46 netMm10,46 netMm39,46 loss HLTOGAannotvHg38v1,236 lost HLTOGAannotvHg38v1,40 HLTOGAannotvHg38v1,260 HLTOGAannotvHg38v1,272 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lower chainHg38,487 chainMm10,487 chainMm39,487 chainNetHg38,490 chainNetMm10,489 chainNetMm39,490 netHg38,487 netMm10,487 netMm39,487 lower-level chainHg38,850 chainHg38,856 chainMm10,850 chainMm10,856 chainMm39,850 chainMm39,856 chainNetHg38,853 chainNetHg38,859 chainNetMm10,852 chainNetMm10,858 chainNetMm39,853 chainNetMm39,859 netHg38,850 netHg38,856 netMm10,850 netMm10,856 netMm39,850 netMm39,856 ls-snp uniprot,1536 lt HLTOGAannotvHg38v1,213 refSeqComposite,940 ltr rmsk,170 m HLTOGAannotvHg38v1,345 augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,463 machine HLTOGAannotvHg38v1,88 made rmsk,110 uniprot,931 uniprot,938 maglott refGene,404 refSeqComposite,1791 xenoRefGene,363 mailing refSeqComposite,1685 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,75 refGene,56 refSeqComposite,115 refSeqComposite,1095 rmsk,123 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refGene,384 refSeqComposite,1771 rmsk,391 rmsk,405 xenoRefGene,343 mammals HLTOGAannotvHg38v1,56 manner refSeqComposite,1622 uniprot,1469 manual refSeqComposite,257 uniprot,1652 manually refSeqComposite,249 refSeqComposite,420 many chainHg38,397 chainMm10,397 chainMm39,397 chainNetHg38,400 chainNetMm10,399 chainNetMm39,400 mrna,90 netHg38,397 netMm10,397 netMm39,397 uniprot,932 uniprot,1124 map chainHg38,325 chainMm10,325 chainMm39,325 chainNetHg38,328 chainNetMm10,327 chainNetMm39,328 netHg38,325 netMm10,325 netMm39,325 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1104 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,319 ucscToINSDC,10 ucscToRefSeq,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark uniprot,1539 uniprot,1956 marked refSeqComposite,521 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainHg38,253 chainHg38,512 chainHg38,550 chainMm10,253 chainMm10,512 chainMm10,550 chainMm39,253 chainMm39,512 chainMm39,550 chainNetHg38,256 chainNetHg38,515 chainNetHg38,553 chainNetMm10,255 chainNetMm10,514 chainNetMm10,552 chainNetMm39,256 chainNetMm39,515 chainNetMm39,553 mrna,243 mrna,258 mrna,299 mrna,317 netHg38,253 netHg38,512 netHg38,550 netMm10,253 netMm10,512 netMm10,550 netMm39,253 netMm39,512 netMm39,550 refSeqComposite,908 refSeqComposite,922 uniprot,1305 uniprot,1341 matches mrna,50 matching chainHg38,256 chainMm10,256 chainMm39,256 chainNetHg38,259 chainNetMm10,258 chainNetMm39,259 netHg38,256 netMm10,256 netMm39,256 uniprot,1068 uniprot,1075 matrix chainHg38,663 chainHg38,695 chainMm10,663 chainMm10,695 chainMm39,663 chainMm39,695 chainNetHg38,666 chainNetHg38,698 chainNetMm10,665 chainNetMm10,697 chainNetMm39,666 chainNetMm39,698 netHg38,663 netHg38,695 netMm10,663 netMm10,695 netMm39,663 netMm39,695 mature unipChain,3 uniprot,251 uniprot,292 maximally chainHg38,655 chainMm10,655 chainMm39,655 chainNetHg38,658 chainNetMm10,657 chainNetMm39,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netHg38,655 netMm10,655 netMm39,655 maximilian uniprot,1944 maxtracks augustusGene,139 may HLTOGAannotvHg38v1,189 HLTOGAannotvHg38v1,263 HLTOGAannotvHg38v1,265 chainHg38,171 chainHg38,426 chainMm10,171 chainMm10,426 chainMm39,171 chainMm39,426 chainNetHg38,174 chainNetHg38,429 chainNetMm10,173 chainNetMm10,428 chainNetMm39,174 chainNetMm39,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netHg38,171 netHg38,426 netMm10,171 netMm10,426 netMm39,171 netMm39,426 refSeqComposite,59 refSeqComposite,659 rmsk,297 rmsk,307 simpleRepeat,43 uniprot,2046 mcgarvey refGene,376 refSeqComposite,1763 xenoRefGene,335 md5 uniprot,1601 mediating uniprot,314 medium chainHg38,700 chainMm10,700 chainMm39,700 chainNetHg38,703 chainNetMm10,702 chainNetMm39,703 netHg38,700 netMm10,700 netMm39,700 refGene,111 refSeqComposite,618 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refGene,212 refSeqComposite,846 xenoRefGene,172 method HLTOGAannotvHg38v1,27 uniprot,726 uniprot,753 uniprot,776 methods HLTOGAannotvHg38v1,41 augustusGene,46 chainHg38,562 chainHg38,763 chainMm10,562 chainMm10,763 chainMm39,562 chainMm39,763 chainNetHg38,565 chainNetHg38,766 chainNetMm10,564 chainNetMm10,765 chainNetMm39,565 chainNetMm39,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 genscan,130 genscan,197 microsat,45 mrna,383 nestedRepeats,244 netHg38,562 netHg38,763 netMm10,562 netMm10,763 netMm39,562 netMm39,763 refGene,255 refSeqComposite,90 refSeqComposite,1136 refSeqComposite,1218 rmsk,286 simpleRepeat,55 uniprot,777 windowmaskerSdust,46 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael HLTOGAannotvHg38v1,321 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 middle HLTOGAannotvHg38v1,144 HLTOGAannotvHg38v1,178 HLTOGAannotvHg38v1,225 HLTOGAannotvHg38v1,244 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainHg38,928 chainHg38,965 chainHg38,1026 chainHg38,1046 chainHg38,1094 chainMm10,928 chainMm10,965 chainMm10,1026 chainMm10,1046 chainMm10,1094 chainMm39,928 chainMm39,965 chainMm39,1026 chainMm39,1046 chainMm39,1094 chainNetHg38,931 chainNetHg38,968 chainNetHg38,1029 chainNetHg38,1049 chainNetHg38,1097 chainNetMm10,930 chainNetMm10,967 chainNetMm10,1028 chainNetMm10,1048 chainNetMm10,1096 chainNetMm39,931 chainNetMm39,968 chainNetMm39,1029 chainNetMm39,1049 chainNetMm39,1097 netHg38,928 netHg38,965 netHg38,1026 netHg38,1046 netHg38,1094 netMm10,928 netMm10,965 netMm10,1026 netMm10,1046 netMm10,1094 netMm39,928 netMm39,965 netMm39,1026 netMm39,1046 netMm39,1094 minexonintronprob augustusGene,135 minimum chainHg38,676 chainMm10,676 chainMm39,676 chainNetHg38,679 chainNetMm10,678 chainNetMm39,679 netHg38,676 netMm10,676 netMm39,676 minmeanexonintronprob augustusGene,137 minmei chainHg38,920 chainMm10,920 chainMm39,920 chainNetHg38,923 chainNetMm10,922 chainNetMm39,923 netHg38,920 netMm10,920 netMm39,920 mismatch refSeqComposite,892 rmsk,218 mismatching refSeqComposite,896 misplacements uniprot,853 missing HLTOGAannotvHg38v1,205 HLTOGAannotvHg38v1,212 mitochondrion refSeqComposite,240 mj refGene,375 refSeqComposite,1762 xenoRefGene,334 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,303 chainNetMm10,1 chainNetMm10,7 chainNetMm10,71 chainNetMm10,305 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,303 mm39 chainMm39,7 chainMm39,69 chainMm39,303 chainNetMm39,8 chainNetMm39,72 chainNetMm39,306 chainNetMm39Viewchain,6 chainNetMm39Viewnet,6 netMm39,7 netMm39,69 netMm39,303 mode chainHg38,381 chainMm10,381 chainMm39,381 chainNetHg38,384 chainNetMm10,383 chainNetMm39,384 gold,68 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netHg38,381 netMm10,381 netMm39,381 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainHg38,238 chainMm10,238 chainMm39,238 chainNetHg38,241 chainNetMm10,240 chainNetMm39,241 netHg38,238 netMm10,238 netMm39,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 morales HLTOGAannotvHg38v1,346 more augustusGene,35 chainHg38,160 chainHg38,220 chainMm10,160 chainMm10,220 chainMm39,160 chainMm39,220 chainNetHg38,163 chainNetHg38,223 chainNetMm10,162 chainNetMm10,222 chainNetMm39,163 chainNetMm39,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 genscan,50 genscan,125 genscan,163 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netHg38,160 netHg38,220 netMm10,160 netMm10,220 netMm39,160 netMm39,220 refGene,70 refGene,214 refSeqComposite,93 refSeqComposite,129 refSeqComposite,848 refSeqComposite,1378 refSeqComposite,1458 rmsk,323 simpleRepeat,57 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 refSeqComposite,576 refSeqComposite,943 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainHg38,1059 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,96 chainMm10,148 chainMm10,266 chainMm10,291 chainMm10,572 chainMm10,620 chainMm10,1059 chainMm39,1 chainMm39,3 chainMm39,65 chainMm39,96 chainMm39,148 chainMm39,266 chainMm39,291 chainMm39,572 chainMm39,620 chainMm39,1059 chainNetHg38,1062 chainNetMm10,3 chainNetMm10,67 chainNetMm10,98 chainNetMm10,150 chainNetMm10,268 chainNetMm10,293 chainNetMm10,574 chainNetMm10,622 chainNetMm10,1061 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 chainNetMm39,1 chainNetMm39,4 chainNetMm39,68 chainNetMm39,99 chainNetMm39,151 chainNetMm39,269 chainNetMm39,294 chainNetMm39,575 chainNetMm39,623 chainNetMm39,1062 chainNetMm39Viewchain,2 chainNetMm39Viewnet,2 netHg38,1059 netMm10,1 netMm10,3 netMm10,65 netMm10,96 netMm10,148 netMm10,266 netMm10,291 netMm10,572 netMm10,620 netMm10,1059 netMm39,1 netMm39,3 netMm39,65 netMm39,96 netMm39,148 netMm39,266 netMm39,291 netMm39,572 netMm39,620 netMm39,1059 uniprot,521 uniprot,535 mrna mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 much chainHg38,877 chainHg38,894 chainMm10,877 chainMm10,894 chainMm39,877 chainMm39,894 chainNetHg38,880 chainNetHg38,897 chainNetMm10,879 chainNetMm10,896 chainNetMm39,880 chainNetMm39,897 nestedRepeats,210 netHg38,877 netHg38,894 netMm10,877 netMm10,894 netMm39,877 netMm39,894 mujica uniprot,1967 multiple chainHg38,192 chainMm10,192 chainMm39,192 chainNetHg38,195 chainNetMm10,194 chainNetMm39,195 mrna,203 mrna,402 netHg38,192 netMm10,192 netMm39,192 refGene,282 refSeqComposite,1250 refSeqComposite,1297 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,242 munegowda HLTOGAannotvHg38v1,336 must refSeqComposite,302 refSeqComposite,1631 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation HLTOGAannotvHg38v1,157 HLTOGAannotvHg38v1,186 HLTOGAannotvHg38v1,233 HLTOGAannotvHg38v1,241 chainHg38,181 chainMm10,181 chainMm39,181 chainNetHg38,184 chainNetMm10,183 chainNetMm39,184 netHg38,181 netMm10,181 netMm39,181 refSeqComposite,559 mutation-related uniprot,408 mutations HLTOGAannotvHg38v1,276 HLTOGAannotvHg38v1,306 unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 refSeqComposite,1323 refSeqComposite,1626 refSeqComposite,1640 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,914 refSeqComposite,955 refSeqComposite,982 refSeqComposite,1041 refSeqComposite,1068 refSeqComposite,1083 name chainHg38,363 chainMm10,363 chainMm39,363 chainNetHg38,366 chainNetMm10,365 chainNetMm39,366 mrna,144 nestedRepeats,136 netHg38,363 netMm10,363 netMm39,363 refGene,147 refGene,157 refGene,162 refSeqComposite,755 refSeqComposite,768 refSeqComposite,778 refSeqComposite,786 refSeqComposite,798 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainHg38,242 chainMm10,242 chainMm39,242 chainNetHg38,245 chainNetMm10,244 chainNetMm39,245 netHg38,242 netMm10,242 netMm39,242 refGene,169 refSeqComposite,803 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,129 native augustusGene,295 natl chainHg38,1064 chainMm10,1064 chainMm39,1064 chainNetHg38,1067 chainNetMm10,1066 chainNetMm39,1067 netHg38,1064 netMm10,1064 netMm39,1064 natural chainHg38,815 chainMm10,815 chainMm39,815 chainNetHg38,818 chainNetMm10,817 chainNetMm39,818 netHg38,815 netMm10,815 netMm39,815 nbci uniprot,822 nbsp HLTOGAannotvHg38v1,142 HLTOGAannotvHg38v1,164 HLTOGAannotvHg38v1,211 HLTOGAannotvHg38v1,234 HLTOGAannotvHg38v1,271 chainHg38,666 chainMm10,666 chainMm39,666 chainNetHg38,669 chainNetMm10,668 chainNetMm39,669 netHg38,666 netMm10,666 netMm39,666 nc_011120.1 gold,159 ncbi gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refGene,30 refGene,336 refGene,406 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,27 refSeqComposite,72 refSeqComposite,79 refSeqComposite,104 refSeqComposite,317 refSeqComposite,373 refSeqComposite,542 refSeqComposite,638 refSeqComposite,645 refSeqComposite,689 refSeqComposite,1156 refSeqComposite,1187 refSeqComposite,1203 refSeqComposite,1723 refSeqComposite,1793 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 ncbirefseq refSeqComposite,1406 refSeqComposite,1550 refSeqComposite,1694 ncbirefseqcurated refSeqComposite,1409 ncbirefseqdiffs.bb refSeqComposite,1489 ncbirefseqother.bb refSeqComposite,1487 refSeqComposite,1551 ncbirefseqpredicted refSeqComposite,1412 refSeqComposite,1614 ncbirefseqpredicted.gtf refSeqComposite,1615 ncbirefseqpsl refSeqComposite,1420 ndash refSeqComposite,199 refSeqComposite,210 refSeqComposite,340 refSeqComposite,379 refSeqComposite,434 refSeqComposite,457 refSeqComposite,479 refSeqComposite,515 refSeqComposite,548 refSeqComposite,893 refSeqComposite,927 refSeqComposite,960 refSeqComposite,1018 refSeqComposite,1044 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1643 necessary chainHg38,799 chainMm10,799 chainMm39,799 chainNetHg38,802 chainNetMm10,801 chainNetMm39,802 netHg38,799 netMm10,799 netMm39,799 nematodes augustusGene,211 net chainHg38,34 chainHg38,258 chainHg38,261 chainHg38,376 chainHg38,753 chainMm10,34 chainMm10,258 chainMm10,261 chainMm10,376 chainMm10,753 chainMm39,34 chainMm39,258 chainMm39,261 chainMm39,376 chainMm39,753 chainNetHg38,3 chainNetHg38,11 chainNetHg38,37 chainNetHg38,261 chainNetHg38,264 chainNetHg38,379 chainNetHg38,756 chainNetHg38Viewchain,9 chainNetHg38Viewnet,1 chainNetHg38Viewnet,9 chainNetMm10,10 chainNetMm10,36 chainNetMm10,260 chainNetMm10,263 chainNetMm10,378 chainNetMm10,755 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 chainNetMm39,3 chainNetMm39,11 chainNetMm39,37 chainNetMm39,261 chainNetMm39,264 chainNetMm39,379 chainNetMm39,756 chainNetMm39Viewchain,9 chainNetMm39Viewnet,1 chainNetMm39Viewnet,9 netHg38,2 netHg38,9 netHg38,34 netHg38,258 netHg38,261 netHg38,376 netHg38,753 netMm10,2 netMm10,9 netMm10,34 netMm10,258 netMm10,261 netMm10,376 netMm10,753 netMm39,2 netMm39,9 netMm39,34 netMm39,258 netMm39,261 netMm39,376 netMm39,753 netclass chainHg38,869 chainHg38,992 chainMm10,869 chainMm10,992 chainMm39,869 chainMm39,992 chainNetHg38,872 chainNetHg38,995 chainNetMm10,871 chainNetMm10,994 chainNetMm39,872 chainNetMm39,995 netHg38,869 netHg38,992 netMm10,869 netMm10,992 netMm39,869 netMm39,992 nets chainHg38,979 chainMm10,979 chainMm39,979 chainNetHg38,982 chainNetMm10,981 chainNetMm39,982 netHg38,979 netMm10,979 netMm39,979 netsyntenic chainHg38,837 chainHg38,990 chainMm10,837 chainMm10,990 chainMm39,837 chainMm39,990 chainNetHg38,840 chainNetHg38,993 chainNetMm10,839 chainNetMm10,992 chainNetMm39,840 chainNetMm39,993 netHg38,837 netHg38,990 netMm10,837 netMm10,990 netMm39,837 netMm39,990 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainHg38,342 chainHg38,371 chainMm10,342 chainMm10,371 chainMm39,342 chainMm39,371 chainNetHg38,345 chainNetHg38,374 chainNetMm10,344 chainNetMm10,373 chainNetMm39,345 chainNetMm39,374 netHg38,342 netHg38,371 netMm10,342 netMm10,371 netMm39,342 netMm39,371 refSeqComposite,166 refSeqComposite,751 nig augustusGene,270 nm refSeqComposite,224 refSeqComposite,489 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 refGene,8 nm_012309 refSeqComposite,1135 nm_012309.4 refSeqComposite,1133 no HLTOGAannotvHg38v1,155 HLTOGAannotvHg38v1,184 HLTOGAannotvHg38v1,231 microsat,73 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainHg38,49 chainMm10,49 chainMm39,49 chainNetHg38,52 chainNetMm10,51 chainNetMm39,52 netHg38,49 netMm10,49 netMm39,49 non-coding augustusGene,75 refGene,231 refSeqComposite,1084 xenoRefGene,191 non-gorilla xenoRefGene,3 non-protein-coding refGene,25 refGene,239 refSeqComposite,22 xenoRefGene,17 xenoRefGene,199 non-redundant refGene,412 refSeqComposite,1799 xenoRefGene,371 nonsyn chainHg38,548 chainMm10,548 chainMm39,548 chainNetHg38,551 chainNetMm10,550 chainNetMm39,551 netHg38,548 netMm10,548 netMm39,548 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not HLTOGAannotvHg38v1,252 HLTOGAannotvHg38v1,266 chainHg38,804 chainMm10,804 chainMm39,804 chainNetHg38,807 chainNetMm10,806 chainNetMm39,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 mrna,295 ncbiRefSeqOther,7 netHg38,804 netMm10,804 netMm39,804 refSeqComposite,176 refSeqComposite,390 refSeqComposite,428 refSeqComposite,471 refSeqComposite,671 refSeqComposite,696 refSeqComposite,1056 refSeqComposite,1134 rmsk,113 rmsk,313 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note nestedRepeats,264 refSeqComposite,175 refSeqComposite,1616 uniprot,695 novel HLTOGAannotvHg38v1,75 novo augustusGene,304 now uniprot,1680 np refSeqComposite,226 refSeqComposite,229 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,225 refSeqComposite,491 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 refGene,10 ns chainHg38,884 chainMm10,884 chainMm39,884 chainNetHg38,887 chainNetMm10,886 chainNetMm39,887 netHg38,884 netMm10,884 netMm39,884 nuclear rmsk,155 rmsk,163 nucleic microsat,125 mrna,475 mrna,500 refGene,387 refGene,420 refSeqComposite,1774 refSeqComposite,1807 simpleRepeat,85 uniprot,1997 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 o gold,154 refGene,369 refSeqComposite,1756 xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1481 refSeqComposite,1501 uniprot,1506 uniprot,1695 occasional refSeqComposite,62 occur simpleRepeat,36 oct augustusGene,334 of HLTOGAannotvHg38v1,49 HLTOGAannotvHg38v1,81 HLTOGAannotvHg38v1,112 HLTOGAannotvHg38v1,115 HLTOGAannotvHg38v1,146 HLTOGAannotvHg38v1,168 HLTOGAannotvHg38v1,180 HLTOGAannotvHg38v1,201 HLTOGAannotvHg38v1,215 HLTOGAannotvHg38v1,227 HLTOGAannotvHg38v1,246 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainHg38,17 chainHg38,64 chainHg38,179 chainHg38,199 chainHg38,251 chainHg38,272 chainHg38,354 chainHg38,364 chainHg38,482 chainHg38,502 chainHg38,635 chainHg38,640 chainHg38,658 chainHg38,678 chainHg38,878 chainHg38,953 chainHg38,975 chainHg38,999 chainHg38,1013 chainMm10,17 chainMm10,64 chainMm10,179 chainMm10,199 chainMm10,251 chainMm10,272 chainMm10,354 chainMm10,364 chainMm10,482 chainMm10,502 chainMm10,635 chainMm10,640 chainMm10,658 chainMm10,678 chainMm10,878 chainMm10,953 chainMm10,975 chainMm10,999 chainMm10,1013 chainMm39,17 chainMm39,64 chainMm39,179 chainMm39,199 chainMm39,251 chainMm39,272 chainMm39,354 chainMm39,364 chainMm39,482 chainMm39,502 chainMm39,635 chainMm39,640 chainMm39,658 chainMm39,678 chainMm39,878 chainMm39,953 chainMm39,975 chainMm39,999 chainMm39,1013 chainNetHg38,20 chainNetHg38,67 chainNetHg38,182 chainNetHg38,202 chainNetHg38,254 chainNetHg38,275 chainNetHg38,357 chainNetHg38,367 chainNetHg38,485 chainNetHg38,505 chainNetHg38,638 chainNetHg38,643 chainNetHg38,661 chainNetHg38,681 chainNetHg38,881 chainNetHg38,956 chainNetHg38,978 chainNetHg38,1002 chainNetHg38,1016 chainNetMm10,19 chainNetMm10,66 chainNetMm10,181 chainNetMm10,201 chainNetMm10,253 chainNetMm10,274 chainNetMm10,356 chainNetMm10,366 chainNetMm10,484 chainNetMm10,504 chainNetMm10,637 chainNetMm10,642 chainNetMm10,660 chainNetMm10,680 chainNetMm10,880 chainNetMm10,955 chainNetMm10,977 chainNetMm10,1001 chainNetMm10,1015 chainNetMm39,20 chainNetMm39,67 chainNetMm39,182 chainNetMm39,202 chainNetMm39,254 chainNetMm39,275 chainNetMm39,357 chainNetMm39,367 chainNetMm39,485 chainNetMm39,505 chainNetMm39,638 chainNetMm39,643 chainNetMm39,661 chainNetMm39,681 chainNetMm39,881 chainNetMm39,956 chainNetMm39,978 chainNetMm39,1002 chainNetMm39,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 gap,40 gap,63 gap,82 gap,88 gap,122 gap,133 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netHg38,17 netHg38,64 netHg38,179 netHg38,199 netHg38,251 netHg38,272 netHg38,354 netHg38,364 netHg38,482 netHg38,502 netHg38,635 netHg38,640 netHg38,658 netHg38,678 netHg38,878 netHg38,953 netHg38,975 netHg38,999 netHg38,1013 netMm10,17 netMm10,64 netMm10,179 netMm10,199 netMm10,251 netMm10,272 netMm10,354 netMm10,364 netMm10,482 netMm10,502 netMm10,635 netMm10,640 netMm10,658 netMm10,678 netMm10,878 netMm10,953 netMm10,975 netMm10,999 netMm10,1013 netMm39,17 netMm39,64 netMm39,179 netMm39,199 netMm39,251 netMm39,272 netMm39,354 netMm39,364 netMm39,482 netMm39,502 netMm39,635 netMm39,640 netMm39,658 netMm39,678 netMm39,878 netMm39,953 netMm39,975 netMm39,999 netMm39,1013 refGene,5 refGene,101 refGene,120 refGene,134 refGene,159 refGene,270 refGene,302 refGene,415 refSeqComposite,161 refSeqComposite,194 refSeqComposite,212 refSeqComposite,259 refSeqComposite,320 refSeqComposite,342 refSeqComposite,436 refSeqComposite,486 refSeqComposite,517 refSeqComposite,524 refSeqComposite,550 refSeqComposite,608 refSeqComposite,628 refSeqComposite,706 refSeqComposite,734 refSeqComposite,783 refSeqComposite,792 refSeqComposite,872 refSeqComposite,887 refSeqComposite,939 refSeqComposite,985 refSeqComposite,1003 refSeqComposite,1051 refSeqComposite,1238 refSeqComposite,1270 refSeqComposite,1343 refSeqComposite,1424 refSeqComposite,1426 refSeqComposite,1496 refSeqComposite,1566 refSeqComposite,1646 refSeqComposite,1692 refSeqComposite,1696 refSeqComposite,1802 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainHg38,333 chainHg38,339 chainMm10,333 chainMm10,339 chainMm39,333 chainMm39,339 chainNetHg38,336 chainNetHg38,342 chainNetMm10,335 chainNetMm10,341 chainNetMm39,336 chainNetMm39,342 netHg38,333 netHg38,339 netMm10,333 netMm10,339 netMm39,333 netMm39,339 refGene,172 refSeqComposite,806 xenoRefGene,132 offers genscan,79 often HLTOGAannotvHg38v1,206 chainHg38,209 chainHg38,221 chainMm10,209 chainMm10,221 chainMm39,209 chainMm39,221 chainNetHg38,212 chainNetHg38,224 chainNetMm10,211 chainNetMm10,223 chainNetMm39,212 chainNetMm39,224 netHg38,209 netHg38,221 netMm10,209 netMm10,221 netMm39,209 netMm39,221 older uniprot,1560 uniprot,1647 omim refSeqComposite,780 refSeqComposite,799 omitted nestedRepeats,165 on HLTOGAannotvHg38v1,79 HLTOGAannotvHg38v1,295 augustusGene,29 augustusGene,37 augustusGene,151 chainHg38,321 chainHg38,347 chainHg38,450 chainHg38,464 chainHg38,514 chainHg38,519 chainHg38,534 chainHg38,765 chainMm10,321 chainMm10,347 chainMm10,450 chainMm10,464 chainMm10,514 chainMm10,519 chainMm10,534 chainMm10,765 chainMm39,321 chainMm39,347 chainMm39,450 chainMm39,464 chainMm39,514 chainMm39,519 chainMm39,534 chainMm39,765 chainNetHg38,324 chainNetHg38,350 chainNetHg38,453 chainNetHg38,467 chainNetHg38,517 chainNetHg38,522 chainNetHg38,537 chainNetHg38,768 chainNetMm10,323 chainNetMm10,349 chainNetMm10,452 chainNetMm10,466 chainNetMm10,516 chainNetMm10,521 chainNetMm10,536 chainNetMm10,767 chainNetMm39,324 chainNetMm39,350 chainNetMm39,453 chainNetMm39,467 chainNetMm39,517 chainNetMm39,522 chainNetMm39,537 chainNetMm39,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 gap,85 genscan,27 genscan,52 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netHg38,321 netHg38,347 netHg38,450 netHg38,464 netHg38,514 netHg38,519 netHg38,534 netHg38,765 netMm10,321 netMm10,347 netMm10,450 netMm10,464 netMm10,514 netMm10,519 netMm10,534 netMm10,765 netMm39,321 netMm39,347 netMm39,450 netMm39,464 netMm39,514 netMm39,519 netMm39,534 netMm39,765 refGene,72 refGene,383 refSeqComposite,131 refSeqComposite,181 refSeqComposite,238 refSeqComposite,252 refSeqComposite,360 refSeqComposite,513 refSeqComposite,566 refSeqComposite,972 refSeqComposite,1116 refSeqComposite,1596 refSeqComposite,1638 refSeqComposite,1676 refSeqComposite,1701 refSeqComposite,1770 rmsk,74 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,342 once mrna,209 uniprot,647 one augustusGene,169 chainHg38,187 chainHg38,355 chainHg38,501 chainHg38,792 chainHg38,888 chainMm10,187 chainMm10,355 chainMm10,501 chainMm10,792 chainMm10,888 chainMm39,187 chainMm39,355 chainMm39,501 chainMm39,792 chainMm39,888 chainNetHg38,190 chainNetHg38,358 chainNetHg38,504 chainNetHg38,795 chainNetHg38,891 chainNetMm10,189 chainNetMm10,357 chainNetMm10,503 chainNetMm10,794 chainNetMm10,890 chainNetMm39,190 chainNetMm39,358 chainNetMm39,504 chainNetMm39,795 chainNetMm39,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 gold,155 mrna,116 mrna,227 mrna,260 netHg38,187 netHg38,355 netHg38,501 netHg38,792 netHg38,888 netMm10,187 netMm10,355 netMm10,501 netMm10,792 netMm10,888 netMm39,187 netMm39,355 netMm39,501 netMm39,792 netMm39,888 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones uniprot,1041 ongoing uniprot,1569 only chainHg38,351 chainMm10,351 chainMm39,351 chainNetHg38,354 chainNetMm10,353 chainNetMm39,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netHg38,351 netMm10,351 netMm39,351 refGene,248 refGene,293 refSeqComposite,157 refSeqComposite,217 refSeqComposite,234 refSeqComposite,246 refSeqComposite,512 refSeqComposite,564 refSeqComposite,1261 refSeqComposite,1533 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,208 xenoRefGene,253 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainHg38,546 chainMm10,546 chainMm39,546 chainNetHg38,549 chainNetMm10,548 chainNetMm39,549 netHg38,546 netMm10,546 netMm39,546 option augustusGene,167 augustusGene,187 genscan,94 mrna,350 refGene,152 refGene,204 refSeqComposite,773 refSeqComposite,838 xenoRefGene,112 xenoRefGene,164 optional refGene,182 refSeqComposite,816 xenoRefGene,142 options gc5BaseBw,70 genscan,85 mrna,381 or HLTOGAannotvHg38v1,39 HLTOGAannotvHg38v1,96 HLTOGAannotvHg38v1,264 chainHg38,30 chainHg38,127 chainHg38,150 chainHg38,182 chainHg38,485 chainHg38,860 chainHg38,889 chainMm10,30 chainMm10,127 chainMm10,150 chainMm10,182 chainMm10,485 chainMm10,860 chainMm10,889 chainMm39,30 chainMm39,127 chainMm39,150 chainMm39,182 chainMm39,485 chainMm39,860 chainMm39,889 chainNetHg38,33 chainNetHg38,130 chainNetHg38,153 chainNetHg38,185 chainNetHg38,488 chainNetHg38,863 chainNetHg38,892 chainNetMm10,32 chainNetMm10,129 chainNetMm10,152 chainNetMm10,184 chainNetMm10,487 chainNetMm10,862 chainNetMm10,891 chainNetMm39,33 chainNetMm39,130 chainNetMm39,153 chainNetMm39,185 chainNetMm39,488 chainNetMm39,863 chainNetMm39,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 mrna,117 mrna,252 mrna,271 mrna,280 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netHg38,30 netHg38,127 netHg38,150 netHg38,182 netHg38,485 netHg38,860 netHg38,889 netMm10,30 netMm10,127 netMm10,150 netMm10,182 netMm10,485 netMm10,860 netMm10,889 netMm39,30 netMm39,127 netMm39,150 netMm39,182 netMm39,485 netMm39,860 netMm39,889 refGene,62 refGene,170 refSeqComposite,85 refSeqComposite,121 refSeqComposite,227 refSeqComposite,279 refSeqComposite,354 refSeqComposite,400 refSeqComposite,409 refSeqComposite,415 refSeqComposite,424 refSeqComposite,619 refSeqComposite,640 refSeqComposite,688 refSeqComposite,779 refSeqComposite,789 refSeqComposite,804 refSeqComposite,948 refSeqComposite,970 refSeqComposite,1049 refSeqComposite,1310 refSeqComposite,1325 refSeqComposite,1492 refSeqComposite,1514 rmsk,251 rmsk,280 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,130 order gap,79 gold,110 uniprot,872 organ mrna,141 mrna,147 organism chainHg38,330 chainHg38,360 chainMm10,330 chainMm10,360 chainMm39,330 chainMm39,360 chainNetHg38,333 chainNetHg38,363 chainNetMm10,332 chainNetMm10,362 chainNetMm39,333 chainNetMm39,363 netHg38,330 netHg38,360 netMm10,330 netMm10,360 netMm39,330 netMm39,360 organisms chainHg38,905 chainMm10,905 chainMm39,905 chainNetHg38,908 chainNetMm10,907 chainNetMm39,908 nestedRepeats,295 netHg38,905 netMm10,905 netMm39,905 rmsk,302 uniprot,998 xenoRefGene,20 organized refSeqComposite,1373 organizes chainHg38,614 chainMm10,614 chainMm39,614 chainNetHg38,617 chainNetMm10,616 chainNetMm39,617 netHg38,614 netMm10,614 netMm39,614 orientation chainHg38,547 chainMm10,547 chainMm39,547 chainNetHg38,550 chainNetMm10,549 chainNetMm39,550 cytoBandIdeo,6 gap,81 gold,112 netHg38,547 netMm10,547 netMm39,547 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous HLTOGAannotvHg38v1,121 orthologs HLTOGAannotvHg38v1,20 HLTOGAannotvHg38v1,33 HLTOGAannotvHg38v1,93 chainHg38,284 chainMm10,284 chainMm39,284 chainNetHg38,287 chainNetMm10,286 chainNetMm39,287 netHg38,284 netMm10,284 netMm39,284 orthology HLTOGAannotvHg38v1,303 HLTOGAannotvHg38v1,360 osipova HLTOGAannotvHg38v1,338 ostell mrna,470 mrna,494 other augustusGene,208 chainHg38,24 chainHg38,412 chainHg38,505 chainMm10,24 chainMm10,412 chainMm10,505 chainMm39,24 chainMm39,412 chainMm39,505 chainNetHg38,27 chainNetHg38,415 chainNetHg38,508 chainNetMm10,26 chainNetMm10,414 chainNetMm10,507 chainNetMm39,27 chainNetMm39,415 chainNetMm39,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 gold,156 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netHg38,24 netHg38,412 netHg38,505 netMm10,24 netMm10,412 netMm10,505 netMm39,24 netMm39,412 netMm39,505 refSeqComposite,274 refSeqComposite,378 refSeqComposite,381 refSeqComposite,1367 refSeqComposite,1393 rmsk,195 rmsk,399 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 genscan,58 refGene,78 refSeqComposite,137 refSeqComposite,1321 refSeqComposite,1328 refSeqComposite,1344 refSeqComposite,1359 refSeqComposite,1483 refSeqComposite,1503 refSeqComposite,1624 refSeqComposite,1677 refSeqComposite,1684 refSeqComposite,1702 rmsk,124 rmsk,129 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainHg38,634 chainMm10,634 chainMm39,634 chainNetHg38,637 chainNetMm10,636 chainNetMm39,637 netHg38,634 netMm10,634 netMm39,634 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside refSeqComposite,686 uniprot,558 over chainHg38,195 chainHg38,649 chainMm10,195 chainMm10,649 chainMm39,195 chainMm39,649 chainNetHg38,198 chainNetHg38,652 chainNetMm10,197 chainNetMm10,651 chainNetMm39,198 chainNetMm39,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netHg38,195 netHg38,649 netMm10,195 netMm10,649 netMm39,195 netMm39,649 refSeqComposite,1031 uniprot,522 uniprot,536 overlapping chainHg38,112 chainHg38,175 chainMm10,112 chainMm10,175 chainMm39,112 chainMm39,175 chainNetHg38,115 chainNetHg38,178 chainNetMm10,114 chainNetMm10,177 chainNetMm39,115 chainNetMm39,178 netHg38,112 netHg38,175 netMm10,112 netMm10,175 netMm39,112 netMm39,175 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainHg38,1033 chainMm10,1033 chainMm39,1033 chainNetHg38,1036 chainNetMm10,1035 chainNetMm39,1036 netHg38,1033 netMm10,1033 netMm39,1033 pack chainHg38,231 chainMm10,231 chainMm39,231 chainNetHg38,234 chainNetMm10,233 chainNetMm39,234 nestedRepeats,116 netHg38,231 netMm10,231 netMm39,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 genscan,78 genscan,123 mrna,56 mrna,361 mrna,382 refGene,54 refGene,138 refGene,229 refSeqComposite,113 refSeqComposite,738 refSeqComposite,863 refSeqComposite,1123 refSeqComposite,1641 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,98 xenoRefGene,189 pages chainHg38,770 chainMm10,770 chainMm39,770 chainNetHg38,773 chainNetMm10,772 chainNetMm39,773 netHg38,770 netMm10,770 netMm39,770 pair gap,95 pairwise chainHg38,1011 chainHg38,1029 chainMm10,1011 chainMm10,1029 chainMm39,1011 chainMm39,1029 chainNetHg38,1014 chainNetHg38,1032 chainNetMm10,1013 chainNetMm10,1031 chainNetMm39,1014 chainNetMm39,1032 netHg38,1011 netHg38,1029 netMm10,1011 netMm10,1029 netMm39,1011 netMm39,1029 paradigm HLTOGAannotvHg38v1,76 paralogs HLTOGAannotvHg38v1,95 chainHg38,224 chainMm10,224 chainMm39,224 chainNetHg38,227 chainNetMm10,226 chainNetMm39,227 netHg38,224 netMm10,224 netMm39,224 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parentheses gold,147 part chainHg38,271 chainMm10,271 chainMm39,271 chainNetHg38,274 chainNetMm10,273 chainNetMm39,274 netHg38,271 netMm10,271 netMm39,271 refSeqComposite,523 partially HLTOGAannotvHg38v1,165 particular augustusGene,234 chainHg38,197 chainMm10,197 chainMm39,197 chainNetHg38,200 chainNetMm10,199 chainNetMm39,200 netHg38,197 netMm10,197 netMm39,197 refSeqComposite,296 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts HLTOGAannotvHg38v1,200 chainHg38,39 chainHg38,50 chainMm10,39 chainMm10,50 chainMm39,39 chainMm39,50 chainNetHg38,42 chainNetHg38,53 chainNetMm10,41 chainNetMm10,52 chainNetMm39,42 chainNetMm39,53 netHg38,39 netHg38,50 netMm10,39 netMm10,50 netMm39,39 netMm39,50 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainHg38,916 chainHg38,1019 chainMm10,916 chainMm10,1019 chainMm39,916 chainMm39,1019 chainNetHg38,919 chainNetHg38,1022 chainNetMm10,918 chainNetMm10,1021 chainNetMm39,919 chainNetMm39,1022 netHg38,916 netHg38,1019 netMm10,916 netMm10,1019 netMm39,916 netMm39,1019 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainHg38,1016 chainMm10,1016 chainMm39,1016 chainNetHg38,1019 chainNetMm10,1018 chainNetMm39,1019 netHg38,1016 netMm10,1016 netMm39,1016 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 pia uniprot,1971 pick uniprot,1089 pipeline refSeqComposite,1189 uniprot,1537 pipelines uniprot,1850 place chainHg38,789 chainMm10,789 chainMm39,789 chainNetHg38,792 chainNetMm10,791 chainNetMm39,792 netHg38,789 netMm10,789 netMm39,789 placed chainHg38,831 chainMm10,831 chainMm39,831 chainNetHg38,834 chainNetMm10,833 chainNetMm39,834 netHg38,831 netMm10,831 netMm39,831 placement refSeqComposite,964 places mrna,403 refGene,283 refSeqComposite,1251 xenoRefGene,243 please refGene,44 refSeqComposite,102 refSeqComposite,1109 refSeqComposite,1681 uniprot,685 uniprot,1439 uniprot,1826 plus refSeqComposite,898 pmc HLTOGAannotvHg38v1,373 chainHg38,1078 chainHg38,1109 chainMm10,1078 chainMm10,1109 chainMm39,1078 chainMm39,1109 chainNetHg38,1081 chainNetHg38,1112 chainNetMm10,1080 chainNetMm10,1111 chainNetMm39,1081 chainNetMm39,1112 microsat,136 mrna,486 mrna,512 mrna,530 netHg38,1078 netHg38,1109 netMm10,1078 netMm10,1109 netMm39,1078 netMm39,1109 refGene,356 refGene,398 refGene,432 refSeqComposite,1743 refSeqComposite,1785 refSeqComposite,1819 simpleRepeat,96 uniprot,2008 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc10193443 HLTOGAannotvHg38v1,374 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,531 refGene,357 refSeqComposite,1744 xenoRefGene,316 pmc208784 chainHg38,1079 chainMm10,1079 chainMm39,1079 chainNetHg38,1082 chainNetMm10,1081 chainNetMm39,1082 netHg38,1079 netMm10,1079 netMm39,1079 pmc308779 mrna,513 pmc3245120 uniprot,2009 pmc3531190 mrna,487 pmc3965018 refGene,399 refSeqComposite,1786 xenoRefGene,358 pmc430961 chainHg38,1110 chainMm10,1110 chainMm39,1110 chainNetHg38,1113 chainNetMm10,1112 chainNetMm39,1113 netHg38,1110 netMm10,1110 netMm39,1110 pmc539979 refGene,433 refSeqComposite,1820 xenoRefGene,392 pmid HLTOGAannotvHg38v1,371 augustusGene,314 augustusGene,339 chainHg38,1038 chainHg38,1076 chainHg38,1107 chainMm10,1038 chainMm10,1076 chainMm10,1107 chainMm39,1038 chainMm39,1076 chainMm39,1107 chainNetHg38,1041 chainNetHg38,1079 chainNetHg38,1110 chainNetMm10,1040 chainNetMm10,1078 chainNetMm10,1109 chainNetMm39,1041 chainNetMm39,1079 chainNetMm39,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 genscan,229 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netHg38,1038 netHg38,1076 netHg38,1107 netMm10,1038 netMm10,1076 netMm10,1107 netMm39,1038 netMm39,1076 netMm39,1107 refGene,354 refGene,396 refGene,430 refSeqComposite,1741 refSeqComposite,1783 refSeqComposite,1817 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainHg38,705 chainMm10,705 chainMm39,705 chainNetHg38,708 chainNetMm10,707 chainNetMm39,708 netHg38,705 netMm10,705 netMm39,705 refSeqComposite,983 uniprot,610 positions HLTOGAannotvHg38v1,109 uniprot,1495 possible chainHg38,406 chainMm10,406 chainMm39,406 chainNetHg38,409 chainNetMm10,408 chainNetMm39,409 netHg38,406 netMm10,406 netMm39,406 refSeqComposite,185 uniprot,601 possibly chainHg38,283 chainMm10,283 chainMm39,283 chainNetHg38,286 chainNetMm10,285 chainNetMm39,286 netHg38,283 netMm10,283 netMm39,283 simpleRepeat,18 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1518 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refGene,108 refSeqComposite,203 refSeqComposite,339 refSeqComposite,358 refSeqComposite,403 refSeqComposite,589 refSeqComposite,615 refSeqComposite,691 refSeqComposite,711 refSeqComposite,1411 refSeqComposite,1671 uniprot,48 uniprot,193 xenoRefGene,68 prediction augustusGene,321 genscan,73 genscan,211 refGene,93 refSeqComposite,375 refSeqComposite,600 xenoRefGene,53 predictions HLTOGAannotvHg38v1,14 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refGene,14 refGene,195 refGene,224 refSeqComposite,10 refSeqComposite,829 refSeqComposite,858 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared HLTOGAannotvHg38v1,318 gc5BaseBw,80 ucscToINSDC,49 ucscToRefSeq,43 uniprot,712 present HLTOGAannotvHg38v1,152 HLTOGAannotvHg38v1,172 HLTOGAannotvHg38v1,219 HLTOGAannotvHg38v1,278 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous refSeqComposite,1220 refSeqComposite,1335 refSeqComposite,1690 uniprot,1654 previously chainHg38,909 chainMm10,909 chainMm39,909 chainNetHg38,912 chainNetMm10,911 chainNetMm39,912 netHg38,909 netMm10,909 netMm39,909 refSeqComposite,500 primary unipStruct,4 uniprot,360 principal gap,120 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainHg38,1063 chainMm10,1063 chainMm39,1063 chainNetHg38,1066 chainNetMm10,1065 chainNetMm39,1066 netHg38,1063 netMm10,1063 netMm39,1063 procedure uniprot,990 procedures gap,22 gold,24 process chainHg38,813 chainMm10,813 chainMm39,813 chainNetHg38,816 chainNetMm10,815 chainNetMm39,816 netHg38,813 netMm10,813 netMm39,813 refSeqComposite,647 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed HLTOGAannotvHg38v1,97 chainHg38,212 chainMm10,212 chainMm39,212 chainNetHg38,215 chainNetMm10,214 chainNetMm39,215 netHg38,212 netMm10,212 netMm39,212 processing refSeqComposite,1333 produced mrna,442 refGene,321 refSeqComposite,383 refSeqComposite,1710 xenoRefGene,281 produces refSeqComposite,48 products unipChain,5 program augustusGene,21 augustusGene,257 chainHg38,605 chainHg38,645 chainHg38,783 chainHg38,836 chainHg38,868 chainHg38,944 chainHg38,947 chainMm10,605 chainMm10,645 chainMm10,783 chainMm10,836 chainMm10,868 chainMm10,944 chainMm10,947 chainMm39,605 chainMm39,645 chainMm39,783 chainMm39,836 chainMm39,868 chainMm39,944 chainMm39,947 chainNetHg38,608 chainNetHg38,648 chainNetHg38,786 chainNetHg38,839 chainNetHg38,871 chainNetHg38,947 chainNetHg38,950 chainNetMm10,607 chainNetMm10,647 chainNetMm10,785 chainNetMm10,838 chainNetMm10,870 chainNetMm10,946 chainNetMm10,949 chainNetMm39,608 chainNetMm39,648 chainNetMm39,786 chainNetMm39,839 chainNetMm39,871 chainNetMm39,947 chainNetMm39,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netHg38,605 netHg38,645 netHg38,783 netHg38,836 netHg38,868 netHg38,944 netHg38,947 netMm10,605 netMm10,645 netMm10,783 netMm10,836 netMm10,868 netMm10,944 netMm10,947 netMm39,605 netMm39,645 netMm39,783 netMm39,836 netMm39,868 netMm39,944 netMm39,947 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 uniprot,1529 programmatically refSeqComposite,1319 programs chainHg38,993 chainMm10,993 chainMm39,993 chainNetHg38,996 chainNetMm10,995 chainNetMm39,996 netHg38,993 netMm10,993 netMm39,993 uniprot,1877 project refGene,338 refSeqComposite,1158 refSeqComposite,1725 xenoRefGene,298 projected uniprot,800 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,718 prot.bed uniprot,1931 uniprot,1933 protein HLTOGAannotvHg38v1,270 HLTOGAannotvHg38v1,293 HLTOGAannotvHg38v1,308 HLTOGAannotvHg38v1,311 refSeqComposite,268 refSeqComposite,361 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refGene,23 refGene,237 refSeqComposite,20 refSeqComposite,236 refSeqComposite,539 xenoRefGene,15 xenoRefGene,197 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins HLTOGAannotvHg38v1,163 HLTOGAannotvHg38v1,193 refGene,419 refSeqComposite,1806 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,378 protocadherin refSeqComposite,416 provide uniprot,1860 provided refSeqComposite,37 refSeqComposite,68 refSeqComposite,205 refSeqComposite,443 uniprot,817 provides HLTOGAannotvHg38v1,298 gap,32 gold,34 uniprot,489 providing augustusGene,254 genscan,175 nestedRepeats,312 rmsk,335 provisional refGene,110 refSeqComposite,617 refSeqComposite,666 xenoRefGene,70 pruitt refGene,358 refGene,400 refSeqComposite,1745 refSeqComposite,1787 xenoRefGene,317 xenoRefGene,359 pseudogenes HLTOGAannotvHg38v1,98 chainHg38,213 chainHg38,227 chainMm10,213 chainMm10,227 chainMm39,213 chainMm39,227 chainNetHg38,216 chainNetHg38,230 chainNetMm10,215 chainNetMm10,229 chainNetMm39,216 chainNetMm39,230 netHg38,213 netHg38,227 netMm10,213 netMm10,227 netMm39,213 netMm39,227 refSeqComposite,408 uniprot,1184 psl mrna,35 refSeqComposite,453 refSeqComposite,1175 refSeqComposite,1416 uniprot,1479 pslmap uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 mrna,453 refSeqComposite,1322 refSeqComposite,1625 uniprot,709 publications refSeqComposite,253 refSeqComposite,423 uniprot,38 publicly nestedRepeats,275 pull-down refGene,211 refSeqComposite,845 xenoRefGene,171 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainHg38,717 chainMm10,717 chainMm39,717 chainNetHg38,720 chainNetMm10,719 chainNetMm39,720 netHg38,717 netMm10,717 netMm39,717 quality mrna,53 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 query HLTOGAannotvHg38v1,70 HLTOGAannotvHg38v1,126 HLTOGAannotvHg38v1,175 HLTOGAannotvHg38v1,222 rmsk,47 rmsk,61 uniprot,1484 questions refSeqComposite,1689 uniprot,1834 quickly mrna,338 refGene,190 refSeqComposite,824 xenoRefGene,150 quite simpleRepeat,45 quot chainHg38,26 chainHg38,28 chainHg38,33 chainHg38,35 chainHg38,101 chainHg38,103 chainHg38,230 chainHg38,232 chainHg38,234 chainHg38,236 chainHg38,338 chainHg38,340 chainHg38,679 chainHg38,681 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,101 chainMm10,103 chainMm10,230 chainMm10,232 chainMm10,234 chainMm10,236 chainMm10,338 chainMm10,340 chainMm10,679 chainMm10,681 chainMm39,26 chainMm39,28 chainMm39,33 chainMm39,35 chainMm39,101 chainMm39,103 chainMm39,230 chainMm39,232 chainMm39,234 chainMm39,236 chainMm39,338 chainMm39,340 chainMm39,679 chainMm39,681 chainNetHg38,29 chainNetHg38,31 chainNetHg38,36 chainNetHg38,38 chainNetHg38,104 chainNetHg38,106 chainNetHg38,233 chainNetHg38,235 chainNetHg38,237 chainNetHg38,239 chainNetHg38,341 chainNetHg38,343 chainNetHg38,682 chainNetHg38,684 chainNetMm10,28 chainNetMm10,30 chainNetMm10,35 chainNetMm10,37 chainNetMm10,103 chainNetMm10,105 chainNetMm10,232 chainNetMm10,234 chainNetMm10,236 chainNetMm10,238 chainNetMm10,340 chainNetMm10,342 chainNetMm10,681 chainNetMm10,683 chainNetMm39,29 chainNetMm39,31 chainNetMm39,36 chainNetMm39,38 chainNetMm39,104 chainNetMm39,106 chainNetMm39,233 chainNetMm39,235 chainNetMm39,237 chainNetMm39,239 chainNetMm39,341 chainNetMm39,343 chainNetMm39,682 chainNetMm39,684 gc5BaseBw,58 gc5BaseBw,62 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netHg38,26 netHg38,28 netHg38,33 netHg38,35 netHg38,101 netHg38,103 netHg38,230 netHg38,232 netHg38,234 netHg38,236 netHg38,338 netHg38,340 netHg38,679 netHg38,681 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,101 netMm10,103 netMm10,230 netMm10,232 netMm10,234 netMm10,236 netMm10,338 netMm10,340 netMm10,679 netMm10,681 netMm39,26 netMm39,28 netMm39,33 netMm39,35 netMm39,101 netMm39,103 netMm39,230 netMm39,232 netMm39,234 netMm39,236 netMm39,338 netMm39,340 netMm39,679 netMm39,681 refSeqComposite,504 refSeqComposite,507 refSeqComposite,1430 refSeqComposite,1432 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainHg38,1043 chainHg38,1089 chainMm10,1043 chainMm10,1089 chainMm39,1043 chainMm39,1089 chainNetHg38,1046 chainNetHg38,1092 chainNetMm10,1045 chainNetMm10,1091 chainNetMm39,1046 chainNetMm39,1092 nestedRepeats,327 netHg38,1043 netHg38,1089 netMm10,1043 netMm10,1089 netMm39,1043 netMm39,1089 rmsk,350 windowmaskerSdust,99 r.s chainHg38,1008 chainMm10,1008 chainMm39,1008 chainNetHg38,1011 chainNetMm10,1010 chainNetMm39,1011 netHg38,1008 netMm10,1008 netMm39,1008 random augustusGene,119 raney uniprot,1960 range gap,147 nestedRepeats,227 nestedRepeats,236 refSeqComposite,984 uniprot,1809 ranked chainHg38,780 chainMm10,780 chainMm39,780 chainNetHg38,783 chainNetMm10,782 chainNetMm39,783 netHg38,780 netMm10,780 netMm39,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1288 uniprot,1708 rc chainHg38,1091 chainMm10,1091 chainMm39,1091 chainNetHg38,1094 chainNetMm10,1093 chainNetMm39,1094 netHg38,1091 netMm10,1091 netMm39,1091 rmsk,200 read gap,94 refSeqComposite,1457 realigning refSeqComposite,50 realignment refSeqComposite,58 refSeqComposite,485 rearrangement chainHg38,289 chainHg38,492 chainHg38,1056 chainMm10,289 chainMm10,492 chainMm10,1056 chainMm39,289 chainMm39,492 chainMm39,1056 chainNetHg38,292 chainNetHg38,495 chainNetHg38,1059 chainNetMm10,291 chainNetMm10,494 chainNetMm10,1058 chainNetMm39,292 chainNetMm39,495 chainNetMm39,1059 netHg38,289 netHg38,492 netHg38,1056 netMm10,289 netMm10,492 netMm10,1056 netMm39,289 netMm39,492 netMm39,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 record refGene,105 refSeqComposite,612 refSeqComposite,633 refSeqComposite,669 refSeqComposite,694 refSeqComposite,709 uniprot,496 xenoRefGene,65 records refGene,68 refSeqComposite,127 refSeqComposite,658 refer genscan,144 refSeqComposite,1682 uniprot,1827 reference HLTOGAannotvHg38v1,10 HLTOGAannotvHg38v1,51 HLTOGAannotvHg38v1,68 HLTOGAannotvHg38v1,117 refGene,32 refGene,51 refGene,385 refGene,407 refSeqComposite,29 refSeqComposite,110 refSeqComposite,463 refSeqComposite,876 refSeqComposite,1086 refSeqComposite,1772 refSeqComposite,1794 ucscToRefSeq,23 uniprot,1378 uniprot,1422 xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references HLTOGAannotvHg38v1,324 augustusGene,285 chainHg38,1006 chainMm10,1006 chainMm39,1006 chainNetHg38,1009 chainNetMm10,1008 chainNetMm39,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 genscan,152 genscan,179 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netHg38,1006 netMm10,1006 netMm39,1006 refGene,339 refSeqComposite,1726 rmsk,102 rmsk,346 simpleRepeat,73 uniprot,1984 windowmaskerSdust,89 xenoRefGene,299 refgene refSeqComposite,1415 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refGene,2 refGene,6 refGene,17 refGene,35 refGene,53 refGene,67 refGene,104 refGene,256 refGene,337 refGene,380 refGene,409 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,32 refSeqComposite,39 refSeqComposite,44 refSeqComposite,52 refSeqComposite,83 refSeqComposite,86 refSeqComposite,112 refSeqComposite,126 refSeqComposite,188 refSeqComposite,195 refSeqComposite,197 refSeqComposite,207 refSeqComposite,208 refSeqComposite,213 refSeqComposite,313 refSeqComposite,334 refSeqComposite,338 refSeqComposite,343 refSeqComposite,377 refSeqComposite,386 refSeqComposite,398 refSeqComposite,402 refSeqComposite,432 refSeqComposite,437 refSeqComposite,446 refSeqComposite,455 refSeqComposite,467 refSeqComposite,478 refSeqComposite,505 refSeqComposite,509 refSeqComposite,518 refSeqComposite,526 refSeqComposite,543 refSeqComposite,545 refSeqComposite,551 refSeqComposite,578 refSeqComposite,584 refSeqComposite,586 refSeqComposite,588 refSeqComposite,592 refSeqComposite,611 refSeqComposite,625 refSeqComposite,632 refSeqComposite,657 refSeqComposite,668 refSeqComposite,693 refSeqComposite,708 refSeqComposite,865 refSeqComposite,881 refSeqComposite,1092 refSeqComposite,1112 refSeqComposite,1127 refSeqComposite,1141 refSeqComposite,1144 refSeqComposite,1157 refSeqComposite,1164 refSeqComposite,1195 refSeqComposite,1205 refSeqComposite,1210 refSeqComposite,1221 refSeqComposite,1224 refSeqComposite,1352 refSeqComposite,1366 refSeqComposite,1369 refSeqComposite,1404 refSeqComposite,1407 refSeqComposite,1410 refSeqComposite,1414 refSeqComposite,1418 refSeqComposite,1568 refSeqComposite,1665 refSeqComposite,1667 refSeqComposite,1670 refSeqComposite,1724 refSeqComposite,1767 refSeqComposite,1796 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 refseqdiffs refSeqComposite,1471 refseqother refSeqComposite,1469 regeneron uniprot,1968 region chainHg38,198 chainHg38,395 chainMm10,198 chainMm10,395 chainMm39,198 chainMm39,395 chainNetHg38,201 chainNetHg38,398 chainNetMm10,200 chainNetMm10,397 chainNetMm39,201 chainNetMm39,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netHg38,198 netHg38,395 netMm10,198 netMm10,395 netMm39,198 netMm39,395 refSeqComposite,987 refSeqComposite,1538 uniprot,312 regions HLTOGAannotvHg38v1,85 augustusGene,76 chainHg38,16 chainHg38,134 chainHg38,282 chainMm10,16 chainMm10,134 chainMm10,282 chainMm39,16 chainMm39,134 chainMm39,282 chainNetHg38,19 chainNetHg38,137 chainNetHg38,285 chainNetMm10,18 chainNetMm10,136 chainNetMm10,284 chainNetMm39,19 chainNetMm39,137 chainNetMm39,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netHg38,16 netHg38,134 netHg38,282 netMm10,16 netMm10,134 netMm10,282 netMm39,16 netMm39,134 netMm39,282 refSeqComposite,1491 simpleRepeat,39 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 uniprot,551 relationship chainHg38,846 chainMm10,846 chainMm39,846 chainNetHg38,849 chainNetMm10,848 chainNetMm39,849 netHg38,846 netMm10,846 netMm39,846 relative chainHg38,862 chainMm10,862 chainMm39,862 chainNetHg38,865 chainNetMm10,864 chainNetMm39,865 gap,78 gold,109 netHg38,862 netMm10,862 netMm39,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1114 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,103 uniprot,681 relies HLTOGAannotvHg38v1,78 remain uniprot,1189 remaining chainHg38,685 chainMm10,685 chainMm39,685 chainNetHg38,688 chainNetMm10,687 chainNetMm39,688 netHg38,685 netMm10,685 netMm39,685 removed chainHg38,576 chainMm10,576 chainMm39,576 chainNetHg38,579 chainNetMm10,578 chainNetMm39,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netHg38,576 netMm10,576 netMm39,576 rmsk,279 uniprot,597 uniprot,1150 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainHg38,943 chainMm10,943 chainMm39,943 chainNetHg38,946 chainNetMm10,945 chainNetMm39,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netHg38,943 netMm10,943 netMm39,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainHg38,935 chainMm10,935 chainMm39,935 chainNetHg38,938 chainNetMm10,937 chainNetMm39,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netHg38,935 netMm10,935 netMm39,935 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,977 refSeqComposite,1005 rmsk,374 uniprot,1400 reporting refSeqComposite,1089 represent chainHg38,132 chainHg38,159 chainHg38,442 chainHg38,447 chainMm10,132 chainMm10,159 chainMm10,442 chainMm10,447 chainMm39,132 chainMm39,159 chainMm39,442 chainMm39,447 chainNetHg38,135 chainNetHg38,162 chainNetHg38,445 chainNetHg38,450 chainNetMm10,134 chainNetMm10,161 chainNetMm10,444 chainNetMm10,449 chainNetMm39,135 chainNetMm39,162 chainNetMm39,445 chainNetMm39,450 netHg38,132 netHg38,159 netHg38,442 netHg38,447 netMm10,132 netMm10,159 netMm10,442 netMm10,447 netMm39,132 netMm39,159 netMm39,442 netMm39,447 representative refSeqComposite,536 represented gap,69 rmsk,49 representing gap,112 reproducibility uniprot,1645 required refSeqComposite,906 refSeqComposite,920 requirements refSeqComposite,393 res chainHg38,1101 chainMm10,1101 chainMm39,1101 chainNetHg38,1104 chainNetMm10,1103 chainNetMm39,1104 microsat,127 mrna,477 mrna,502 mrna,522 netHg38,1101 netMm10,1101 netMm39,1101 refGene,348 refGene,389 refGene,422 refSeqComposite,1735 refSeqComposite,1776 refSeqComposite,1809 simpleRepeat,87 uniprot,1999 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 refSeqComposite,1100 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 refSeqComposite,1306 restricted refSeqComposite,577 result chainHg38,172 chainMm10,172 chainMm39,172 chainNetHg38,175 chainNetMm10,174 chainNetMm39,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netHg38,172 netMm10,172 netMm39,172 refSeqComposite,60 uniprot,798 uniprot,1065 uniprot,1170 resulting chainHg38,595 chainMm10,595 chainMm39,595 chainNetHg38,598 chainNetMm10,597 chainNetMm39,598 netHg38,595 netMm10,595 netMm39,595 refSeqComposite,284 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1098 uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review refGene,102 refSeqComposite,609 refSeqComposite,629 refSeqComposite,646 refSeqComposite,677 refSeqComposite,702 xenoRefGene,62 reviewed refGene,112 refSeqComposite,620 refSeqComposite,630 refSeqComposite,636 xenoRefGene,72 reviews refSeqComposite,258 riestra uniprot,1972 right refSeqComposite,971 rightmost refSeqComposite,1013 rna refGene,31 refGene,279 refGene,325 refSeqComposite,28 refSeqComposite,1085 refSeqComposite,1145 refSeqComposite,1206 refSeqComposite,1247 refSeqComposite,1655 rmsk,186 rmsk,189 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rna-seq refSeqComposite,74 refSeqComposite,365 rnas ncbiRefSeqPsl,6 refGene,7 refGene,257 refSeqComposite,53 refSeqComposite,438 refSeqComposite,487 refSeqComposite,1225 xenoRefGene,217 robert chainHg38,983 chainMm10,983 chainMm39,983 chainNetHg38,986 chainNetMm10,985 chainNetMm39,986 nestedRepeats,307 netHg38,983 netMm10,983 netMm39,983 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainHg38,932 chainMm10,932 chainMm39,932 chainNetHg38,935 chainNetMm10,934 chainNetMm39,935 netHg38,932 netMm10,932 netMm39,932 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainHg38,648 chainMm10,648 chainMm39,648 chainNetHg38,651 chainNetMm10,650 chainNetMm39,651 netHg38,648 netMm10,648 netMm39,648 refSeqComposite,1605 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainHg38,1051 chainHg38,1068 chainHg38,1081 chainMm10,1051 chainMm10,1068 chainMm10,1081 chainMm39,1051 chainMm39,1068 chainMm39,1081 chainNetHg38,1054 chainNetHg38,1071 chainNetHg38,1084 chainNetMm10,1053 chainNetMm10,1070 chainNetMm10,1083 chainNetMm39,1054 chainNetMm39,1071 chainNetMm39,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netHg38,1051 netHg38,1068 netHg38,1081 netMm10,1051 netMm10,1068 netMm10,1081 netMm39,1051 netMm39,1068 netMm39,1081 refSeqComposite,105 refSeqComposite,318 refSeqComposite,465 refSeqComposite,484 refSeqComposite,1119 refSeqComposite,1204 rmsk,18 rmsk,293 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1450 salzberg genscan,189 same chainHg38,521 chainHg38,536 chainMm10,521 chainMm10,536 chainMm39,521 chainMm39,536 chainNetHg38,524 chainNetHg38,539 chainNetMm10,523 chainNetMm10,538 chainNetMm39,524 chainNetMm39,539 nestedRepeats,143 netHg38,521 netHg38,536 netMm10,521 netMm10,536 netMm39,521 netMm39,536 refSeqComposite,1217 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 santa chainHg38,956 chainHg38,1001 chainMm10,956 chainMm10,1001 chainMm39,956 chainMm39,1001 chainNetHg38,959 chainNetHg38,1004 chainNetMm10,958 chainNetMm10,1003 chainNetMm39,959 chainNetMm39,1004 netHg38,956 netHg38,1001 netMm10,956 netMm10,1001 netMm39,956 netMm39,1001 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,472 scaffold gap,137 gold,80 gold,118 scaffolds gap,129 gap,140 scale HLTOGAannotvHg38v1,363 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainHg38,923 chainHg38,1080 chainMm10,923 chainMm10,1080 chainMm39,923 chainMm39,1080 chainNetHg38,926 chainNetHg38,1083 chainNetMm10,925 chainNetMm10,1082 chainNetMm39,926 chainNetMm39,1083 netHg38,923 netHg38,1080 netMm10,923 netMm10,1080 netMm39,923 netMm39,1080 sci chainHg38,1066 chainMm10,1066 chainMm39,1066 chainNetHg38,1069 chainNetMm10,1068 chainNetMm39,1069 netHg38,1066 netMm10,1066 netMm39,1066 science HLTOGAannotvHg38v1,364 genscan,203 scientific refSeqComposite,281 uniprot,37 scientists mrna,457 refGene,330 refSeqComposite,1717 xenoRefGene,290 score chainHg38,677 chainMm10,677 chainMm39,677 chainNetHg38,680 chainNetMm10,679 chainNetMm39,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netHg38,677 netMm10,677 netMm39,677 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainHg38,77 chainHg38,87 chainHg38,656 chainHg38,673 chainHg38,1028 chainMm10,77 chainMm10,87 chainMm10,656 chainMm10,673 chainMm10,1028 chainMm39,77 chainMm39,87 chainMm39,656 chainMm39,673 chainMm39,1028 chainNetHg38,80 chainNetHg38,90 chainNetHg38,659 chainNetHg38,676 chainNetHg38,1031 chainNetMm10,79 chainNetMm10,89 chainNetMm10,658 chainNetMm10,675 chainNetMm10,1030 chainNetMm39,80 chainNetMm39,90 chainNetMm39,659 chainNetMm39,676 chainNetMm39,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netHg38,77 netHg38,87 netHg38,656 netHg38,673 netHg38,1028 netMm10,77 netMm10,87 netMm10,656 netMm10,673 netMm10,1028 netMm39,77 netMm39,87 netMm39,656 netMm39,673 netMm39,1028 scott chainHg38,922 chainMm10,922 chainMm39,922 chainNetHg38,925 chainNetMm10,924 chainNetMm39,925 netHg38,922 netMm10,922 netMm39,922 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 nestedRepeats,67 refSeqComposite,91 refSeqComposite,1650 rmsk,103 uniprot,897 sections chainHg38,803 chainMm10,803 chainMm39,803 chainNetHg38,806 chainNetMm10,805 chainNetMm39,806 netHg38,803 netMm10,803 netMm39,803 see augustusGene,42 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 refGene,77 refGene,247 refSeqComposite,88 refSeqComposite,136 refSeqComposite,336 refSeqComposite,541 rmsk,319 rmsk,393 simpleRepeat,63 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refGene,200 refSeqComposite,510 refSeqComposite,527 refSeqComposite,531 refSeqComposite,544 refSeqComposite,834 xenoRefGene,160 selected mrna,239 mrna,255 mrna,308 refSeqComposite,159 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sep chainHg38,1071 chainMm10,1071 chainMm39,1071 chainNetHg38,1074 chainNetMm10,1073 chainNetMm39,1074 nestedRepeats,356 netHg38,1071 netMm10,1071 netMm39,1071 rmsk,379 separated mrna,210 seq unipConflict,1 sequence HLTOGAannotvHg38v1,150 HLTOGAannotvHg38v1,309 augustusGene,32 augustusGene,70 chainHg38,166 chainHg38,292 chainHg38,1031 chainMm10,166 chainMm10,292 chainMm10,1031 chainMm39,166 chainMm39,292 chainMm39,1031 chainNetHg38,169 chainNetHg38,295 chainNetHg38,1034 chainNetMm10,168 chainNetMm10,294 chainNetMm10,1033 chainNetMm39,169 chainNetMm39,295 chainNetMm39,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,54 gold,53 gold,157 mrna,344 mrna,434 mrna,447 mrna,454 netHg38,166 netHg38,292 netHg38,1031 netMm10,166 netMm10,292 netMm10,1031 netMm39,166 netMm39,292 netMm39,1031 refGene,314 refGene,326 refGene,408 refGene,413 refSeqComposite,651 refSeqComposite,662 refSeqComposite,878 refSeqComposite,978 refSeqComposite,1006 refSeqComposite,1033 refSeqComposite,1045 refSeqComposite,1078 refSeqComposite,1082 refSeqComposite,1087 refSeqComposite,1282 refSeqComposite,1795 refSeqComposite,1800 rmsk,48 rmsk,62 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequence-to-gene refSeqComposite,680 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refGene,33 refGene,52 refGene,386 refSeqComposite,30 refSeqComposite,111 refSeqComposite,269 refSeqComposite,285 refSeqComposite,883 refSeqComposite,1093 refSeqComposite,1656 refSeqComposite,1773 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,30 xenoRefGene,345 sequencing chainHg38,885 chainMm10,885 chainMm39,885 chainNetHg38,888 chainNetMm10,887 chainNetMm39,888 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netHg38,885 netMm10,885 netMm39,885 ucscToINSDC,12 ucscToRefSeq,7 server refSeqComposite,1324 refSeqComposite,1330 refSeqComposite,1346 refSeqComposite,1485 refSeqComposite,1600 refSeqComposite,1627 refSeqComposite,1679 refSeqComposite,1705 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 set refSeqComposite,160 refSeqComposite,1495 refSeqComposite,1632 refSeqComposite,1695 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,154 setting refSeqComposite,1037 refSeqComposite,1064 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,742 several HLTOGAannotvHg38v1,274 mrna,362 shade nestedRepeats,194 shaded mrna,48 nestedRepeats,182 shades nestedRepeats,202 shading nestedRepeats,240 refGene,97 refSeqComposite,604 rmsk,208 rmsk,239 xenoRefGene,57 sharma HLTOGAannotvHg38v1,342 shift refSeqComposite,958 shifted refSeqComposite,967 refSeqComposite,1014 short refSeqComposite,925 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,961 shotgun gold,151 should mrna,275 show refGene,163 refSeqComposite,156 refSeqComposite,787 refSeqComposite,902 refSeqComposite,916 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,123 showing refSeqComposite,956 shown HLTOGAannotvHg38v1,136 chainHg38,41 chainHg38,54 chainMm10,41 chainMm10,54 chainMm39,41 chainMm39,54 chainNetHg38,44 chainNetHg38,57 chainNetMm10,43 chainNetMm10,56 chainNetMm39,44 chainNetMm39,57 gold,101 microsat,48 mrna,93 netHg38,41 netHg38,54 netMm10,41 netMm10,54 netMm39,41 netMm39,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainHg38,15 chainHg38,62 chainHg38,263 chainMm10,15 chainMm10,62 chainMm10,263 chainMm39,15 chainMm39,62 chainMm39,263 chainNetHg38,18 chainNetHg38,65 chainNetHg38,266 chainNetMm10,17 chainNetMm10,64 chainNetMm10,265 chainNetMm39,18 chainNetMm39,65 chainNetMm39,266 gap,10 gc5BaseBw,16 genscan,13 gold,11 mrna,14 nestedRepeats,17 nestedRepeats,81 netHg38,15 netHg38,62 netHg38,263 netMm10,15 netMm10,62 netMm10,263 netMm39,15 netMm39,62 netMm39,263 refGene,20 refSeqComposite,18 refSeqComposite,1000 refSeqComposite,1011 uniprot,14 uniprot,484 xenoRefGene,13 side gap,87 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainHg38,99 chainMm10,99 chainMm39,99 chainNetHg38,102 chainNetMm10,101 chainNetMm39,102 netHg38,99 netMm10,99 netMm39,99 since chainHg38,570 chainMm10,570 chainMm39,570 chainNetHg38,573 chainNetMm10,572 chainNetMm39,573 netHg38,570 netMm10,570 netMm39,570 uniprot,1383 sine rmsk,157 single chainHg38,126 chainHg38,135 chainHg38,619 chainHg38,624 chainMm10,126 chainMm10,135 chainMm10,619 chainMm10,624 chainMm39,126 chainMm39,135 chainMm39,619 chainMm39,624 chainNetHg38,129 chainNetHg38,138 chainNetHg38,622 chainNetHg38,627 chainNetMm10,128 chainNetMm10,137 chainNetMm10,621 chainNetMm10,626 chainNetMm39,129 chainNetMm39,138 chainNetMm39,622 chainNetMm39,627 mrna,398 nestedRepeats,178 netHg38,126 netHg38,135 netHg38,619 netHg38,624 netMm10,126 netMm10,135 netMm10,619 netMm10,624 netMm39,126 netMm39,135 netMm39,619 netMm39,624 refGene,278 refSeqComposite,530 refSeqComposite,1246 uniprot,141 xenoRefGene,238 single-lined chainHg38,206 chainMm10,206 chainMm39,206 chainNetHg38,209 chainNetMm10,208 chainNetMm39,209 netHg38,206 netMm10,206 netMm39,206 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,271 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,134 gap,146 skip refSeqComposite,1030 skipped refSeqComposite,1043 sm refGene,363 refSeqComposite,1750 xenoRefGene,322 small refSeqComposite,933 smallsize chainHg38,703 chainMm10,703 chainMm39,703 chainNetHg38,706 chainNetMm10,705 chainNetMm39,706 netHg38,703 netMm10,703 netMm39,703 smit chainHg38,940 chainHg38,1084 chainMm10,940 chainMm10,1084 chainMm39,940 chainMm39,1084 chainNetHg38,943 chainNetHg38,1087 chainNetMm10,942 chainNetMm10,1086 chainNetMm39,943 chainNetMm39,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netHg38,940 netHg38,1084 netMm10,940 netMm10,1084 netMm39,940 netMm39,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainHg38,434 chainMm10,434 chainMm39,434 chainNetHg38,437 chainNetMm10,436 chainNetMm39,437 netHg38,434 netMm10,434 netMm39,434 refSeqComposite,301 refSeqComposite,1611 uniprot,1135 uniprot,1430 society refSeqComposite,1075 soft-masked rmsk,305 software HLTOGAannotvHg38v1,327 nestedRepeats,255 refSeqComposite,376 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,101 nestedRepeats,207 refSeqComposite,656 refSeqComposite,704 rmsk,105 rmsk,268 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainHg38,772 chainMm10,772 chainMm39,772 chainNetHg38,775 chainNetMm10,774 chainNetMm39,775 netHg38,772 netMm10,772 netMm39,772 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1512 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 space mrna,213 uniprot,1990 spaces gold,99 span chainHg38,393 chainMm10,393 chainMm39,393 chainNetHg38,396 chainNetMm10,395 chainNetMm39,396 netHg38,393 netMm10,393 netMm39,393 refSeqComposite,1002 specialized simpleRepeat,29 species HLTOGAannotvHg38v1,52 HLTOGAannotvHg38v1,127 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainHg38,116 chainHg38,169 chainHg38,188 chainHg38,891 chainMm10,116 chainMm10,169 chainMm10,188 chainMm10,891 chainMm39,116 chainMm39,169 chainMm39,188 chainMm39,891 chainNetHg38,119 chainNetHg38,172 chainNetHg38,191 chainNetHg38,894 chainNetMm10,118 chainNetMm10,171 chainNetMm10,190 chainNetMm10,893 chainNetMm39,119 chainNetMm39,172 chainNetMm39,191 chainNetMm39,894 netHg38,116 netHg38,169 netHg38,188 netHg38,891 netMm10,116 netMm10,169 netMm10,188 netMm10,891 netMm39,116 netMm39,169 netMm39,188 netMm39,891 species-specific augustusGene,156 specific gap,33 gold,35 mrna,140 simpleRepeat,53 specification gap,59 gold,58 specify refSeqComposite,1110 speed refSeqComposite,1438 splice augustusGene,53 genscan,156 refSeqComposite,270 uniprot,144 splicing augustusGene,123 genscan,33 genscan,186 split chainHg38,574 chainMm10,574 chainMm39,574 chainNetHg38,577 chainNetMm10,576 chainNetMm39,577 netHg38,574 netMm10,574 netMm39,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srprna rmsk,194 staff refSeqComposite,639 refSeqComposite,690 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 refSeqComposite,1554 uniprot,125 uniprot,209 uniprot,1821 state chainHg38,917 chainHg38,1020 chainMm10,917 chainMm10,1020 chainMm39,917 chainMm39,1020 chainNetHg38,920 chainNetHg38,1023 chainNetMm10,919 chainNetMm10,1022 chainNetMm39,920 chainNetMm39,1023 netHg38,917 netHg38,1020 netMm10,917 netMm10,1020 netMm39,917 netMm39,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1558 uniprot,1825 stefanie augustusGene,267 step uniprot,901 uniprot,1155 uniprot,1330 storage chainHg38,974 chainMm10,974 chainMm39,974 chainNetHg38,977 chainNetMm10,976 chainNetMm39,977 netHg38,974 netMm10,974 netMm39,974 stored refSeqComposite,1474 uniprot,1733 strand chainHg38,246 chainMm10,246 chainMm39,246 chainNetHg38,249 chainNetMm10,248 chainNetMm39,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netHg38,246 netMm10,246 netMm39,246 strands uniprot,365 strategy uniprot,1120 uniprot,1193 strong HLTOGAannotvHg38v1,253 HLTOGAannotvHg38v1,282 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainHg38,287 chainMm10,287 chainMm39,287 chainNetHg38,290 chainNetMm10,289 chainNetMm39,290 netHg38,287 netMm10,287 netMm39,287 subcellular uniprot,553 subject refSeqComposite,674 refSeqComposite,699 submit refGene,58 refSeqComposite,117 submitted mrna,449 submodel augustusGene,331 subsections chainHg38,638 chainMm10,638 chainMm39,638 chainNetHg38,641 chainNetMm10,640 chainNetMm39,641 netHg38,638 netMm10,638 netMm39,638 subset microsat,54 mrna,79 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,211 refSeqComposite,341 refSeqComposite,511 refSeqComposite,516 refSeqComposite,547 refSeqComposite,549 refSeqComposite,579 refSeqComposite,791 substantial chainHg38,165 chainMm10,165 chainMm39,165 chainNetHg38,168 chainNetMm10,167 chainNetMm39,168 netHg38,165 netMm10,165 netMm39,165 subtrack refSeqComposite,746 refSeqComposite,758 uniprot,411 subtracks chainHg38,29 chainHg38,36 chainMm10,29 chainMm10,36 chainMm39,29 chainMm39,36 chainNetHg38,32 chainNetHg38,39 chainNetMm10,31 chainNetMm10,38 chainNetMm39,32 chainNetMm39,39 netHg38,29 netHg38,36 netMm10,29 netMm10,36 netMm39,29 netMm39,36 refSeqComposite,34 refSeqComposite,162 refSeqComposite,186 refSeqComposite,1394 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,178 such chainHg38,852 chainMm10,852 chainMm39,852 chainNetHg38,855 chainNetMm10,854 chainNetMm39,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netHg38,852 netMm10,852 netMm39,852 refSeqComposite,412 uniprot,306 suffix uniprot,1255 suggestions refGene,57 refSeqComposite,116 suitable uniprot,1868 suppl augustusGene,336 supported gap,92 sure refSeqComposite,1096 uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainHg38,1034 chainMm10,1034 chainMm39,1034 chainNetHg38,1037 chainNetMm10,1036 chainNetMm39,1037 netHg38,1034 netMm10,1034 netMm39,1034 syn chainHg38,517 chainMm10,517 chainMm39,517 chainNetHg38,520 chainNetMm10,519 chainNetMm39,520 netHg38,517 netMm10,517 netMm39,517 syntenic chainHg38,281 chainHg38,859 chainMm10,281 chainMm10,859 chainMm39,281 chainMm39,859 chainNetHg38,284 chainNetHg38,862 chainNetMm10,283 chainNetMm10,861 chainNetMm39,284 chainNetMm39,862 netHg38,281 netHg38,859 netMm10,281 netMm10,859 netMm39,281 netMm39,859 syntenically augustusGene,297 synteny chainHg38,32 chainMm10,32 chainMm39,32 chainNetHg38,35 chainNetMm10,34 chainNetMm39,35 netHg38,32 netMm10,32 netMm39,32 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainHg38,78 chainMm10,78 chainMm39,78 chainNetHg38,81 chainNetMm10,80 chainNetMm39,81 netHg38,78 netMm10,78 netMm39,78 refSeqComposite,1463 refSeqComposite,1522 uniprot,1353 uniprot,1784 systems chainHg38,88 chainMm10,88 chainMm39,88 chainNetHg38,91 chainNetMm10,90 chainNetMm39,91 netHg38,88 netMm10,88 netMm39,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 refGene,403 refSeqComposite,1790 xenoRefGene,362 t-123-31-11491 chainHg38,671 chainMm10,671 chainMm39,671 chainNetHg38,674 chainNetMm10,673 chainNetMm39,674 netHg38,671 netMm10,671 netMm39,671 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 mrna,165 mrna,168 mrna,187 refSeqComposite,1176 refSeqComposite,1308 refSeqComposite,1353 refSeqComposite,1570 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,81 refSeqComposite,1314 refSeqComposite,1399 refSeqComposite,1428 uniprot,1301 tablesize chainHg38,701 chainMm10,701 chainMm39,701 chainNetHg38,704 chainNetMm10,703 chainNetMm39,704 netHg38,701 netMm10,701 netMm39,701 taken refGene,27 refSeqComposite,24 xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 targeting refSeqComposite,580 task mrna,107 tatusova refGene,402 refSeqComposite,1789 xenoRefGene,361 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,114 terminal rmsk,167 terminology refSeqComposite,1071 terms mrna,158 mrna,204 text mrna,121 mrna,161 mrna,201 uniprot,1763 tgap chainHg38,729 chainMm10,729 chainMm39,729 chainNetHg38,732 chainNetMm10,731 chainNetMm39,732 netHg38,729 netMm10,729 netMm39,729 than chainHg38,83 chainHg38,506 chainMm10,83 chainMm10,506 chainMm39,83 chainMm39,506 chainNetHg38,86 chainNetHg38,509 chainNetMm10,85 chainNetMm10,508 chainNetMm39,86 chainNetMm39,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,226 nestedRepeats,213 nestedRepeats,271 netHg38,83 netHg38,506 netMm10,83 netMm10,506 netMm39,83 netMm39,506 refGene,272 refSeqComposite,1240 xenoRefGene,22 xenoRefGene,232 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that HLTOGAannotvHg38v1,28 HLTOGAannotvHg38v1,77 HLTOGAannotvHg38v1,284 chainHg38,20 chainHg38,45 chainHg38,79 chainHg38,139 chainHg38,163 chainHg38,365 chainHg38,392 chainHg38,414 chainHg38,566 chainHg38,822 chainHg38,833 chainMm10,20 chainMm10,45 chainMm10,79 chainMm10,139 chainMm10,163 chainMm10,365 chainMm10,392 chainMm10,414 chainMm10,566 chainMm10,822 chainMm10,833 chainMm39,20 chainMm39,45 chainMm39,79 chainMm39,139 chainMm39,163 chainMm39,365 chainMm39,392 chainMm39,414 chainMm39,566 chainMm39,822 chainMm39,833 chainNetHg38,23 chainNetHg38,48 chainNetHg38,82 chainNetHg38,142 chainNetHg38,166 chainNetHg38,368 chainNetHg38,395 chainNetHg38,417 chainNetHg38,569 chainNetHg38,825 chainNetHg38,836 chainNetMm10,22 chainNetMm10,47 chainNetMm10,81 chainNetMm10,141 chainNetMm10,165 chainNetMm10,367 chainNetMm10,394 chainNetMm10,416 chainNetMm10,568 chainNetMm10,824 chainNetMm10,835 chainNetMm39,23 chainNetMm39,48 chainNetMm39,82 chainNetMm39,142 chainNetMm39,166 chainNetMm39,368 chainNetMm39,395 chainNetMm39,417 chainNetMm39,569 chainNetMm39,825 chainNetMm39,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,74 gold,144 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netHg38,20 netHg38,45 netHg38,79 netHg38,139 netHg38,163 netHg38,365 netHg38,392 netHg38,414 netHg38,566 netHg38,822 netHg38,833 netMm10,20 netMm10,45 netMm10,79 netMm10,139 netMm10,163 netMm10,365 netMm10,392 netMm10,414 netMm10,566 netMm10,822 netMm10,833 netMm39,20 netMm39,45 netMm39,79 netMm39,139 netMm39,163 netMm39,365 netMm39,392 netMm39,414 netMm39,566 netMm39,822 netMm39,833 refGene,186 refSeqComposite,150 refSeqComposite,170 refSeqComposite,215 refSeqComposite,345 refSeqComposite,388 refSeqComposite,820 refSeqComposite,930 refSeqComposite,1021 refSeqComposite,1029 refSeqComposite,1054 refSeqComposite,1097 refSeqComposite,1617 rmsk,42 rmsk,259 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,146 the HLTOGAannotvHg38v1,67 HLTOGAannotvHg38v1,108 HLTOGAannotvHg38v1,120 HLTOGAannotvHg38v1,125 HLTOGAannotvHg38v1,147 HLTOGAannotvHg38v1,169 HLTOGAannotvHg38v1,174 HLTOGAannotvHg38v1,177 HLTOGAannotvHg38v1,181 HLTOGAannotvHg38v1,195 HLTOGAannotvHg38v1,202 HLTOGAannotvHg38v1,216 HLTOGAannotvHg38v1,221 HLTOGAannotvHg38v1,224 HLTOGAannotvHg38v1,228 HLTOGAannotvHg38v1,243 HLTOGAannotvHg38v1,247 HLTOGAannotvHg38v1,257 HLTOGAannotvHg38v1,285 HLTOGAannotvHg38v1,302 HLTOGAannotvHg38v1,307 HLTOGAannotvHg38v1,320 HLTOGAannotvHg38v1,325 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainHg38,18 chainHg38,37 chainHg38,59 chainHg38,71 chainHg38,117 chainHg38,130 chainHg38,147 chainHg38,154 chainHg38,200 chainHg38,203 chainHg38,229 chainHg38,239 chainHg38,244 chainHg38,252 chainHg38,260 chainHg38,264 chainHg38,273 chainHg38,290 chainHg38,299 chainHg38,313 chainHg38,328 chainHg38,334 chainHg38,337 chainHg38,352 chainHg38,358 chainHg38,362 chainHg38,382 chainHg38,388 chainHg38,402 chainHg38,420 chainHg38,437 chainHg38,440 chainHg38,445 chainHg38,458 chainHg38,471 chainHg38,473 chainHg38,480 chainHg38,483 chainHg38,490 chainHg38,496 chainHg38,509 chainHg38,520 chainHg38,524 chainHg38,527 chainHg38,535 chainHg38,539 chainHg38,545 chainHg38,556 chainHg38,559 chainHg38,571 chainHg38,578 chainHg38,580 chainHg38,588 chainHg38,594 chainHg38,603 chainHg38,606 chainHg38,636 chainHg38,641 chainHg38,650 chainHg38,654 chainHg38,661 chainHg38,684 chainHg38,692 chainHg38,762 chainHg38,766 chainHg38,774 chainHg38,778 chainHg38,782 chainHg38,790 chainHg38,835 chainHg38,845 chainHg38,864 chainHg38,867 chainHg38,879 chainHg38,903 chainHg38,945 chainHg38,951 chainHg38,969 chainHg38,976 chainHg38,988 chainHg38,997 chainHg38,1018 chainHg38,1058 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,117 chainMm10,130 chainMm10,147 chainMm10,154 chainMm10,200 chainMm10,203 chainMm10,229 chainMm10,239 chainMm10,244 chainMm10,252 chainMm10,260 chainMm10,264 chainMm10,273 chainMm10,290 chainMm10,299 chainMm10,313 chainMm10,328 chainMm10,334 chainMm10,337 chainMm10,352 chainMm10,358 chainMm10,362 chainMm10,382 chainMm10,388 chainMm10,402 chainMm10,420 chainMm10,437 chainMm10,440 chainMm10,445 chainMm10,458 chainMm10,471 chainMm10,473 chainMm10,480 chainMm10,483 chainMm10,490 chainMm10,496 chainMm10,509 chainMm10,520 chainMm10,524 chainMm10,527 chainMm10,535 chainMm10,539 chainMm10,545 chainMm10,556 chainMm10,559 chainMm10,571 chainMm10,578 chainMm10,580 chainMm10,588 chainMm10,594 chainMm10,603 chainMm10,606 chainMm10,636 chainMm10,641 chainMm10,650 chainMm10,654 chainMm10,661 chainMm10,684 chainMm10,692 chainMm10,762 chainMm10,766 chainMm10,774 chainMm10,778 chainMm10,782 chainMm10,790 chainMm10,835 chainMm10,845 chainMm10,864 chainMm10,867 chainMm10,879 chainMm10,903 chainMm10,945 chainMm10,951 chainMm10,969 chainMm10,976 chainMm10,988 chainMm10,997 chainMm10,1018 chainMm10,1058 chainMm39,18 chainMm39,37 chainMm39,59 chainMm39,71 chainMm39,117 chainMm39,130 chainMm39,147 chainMm39,154 chainMm39,200 chainMm39,203 chainMm39,229 chainMm39,239 chainMm39,244 chainMm39,252 chainMm39,260 chainMm39,264 chainMm39,273 chainMm39,290 chainMm39,299 chainMm39,313 chainMm39,328 chainMm39,334 chainMm39,337 chainMm39,352 chainMm39,358 chainMm39,362 chainMm39,382 chainMm39,388 chainMm39,402 chainMm39,420 chainMm39,437 chainMm39,440 chainMm39,445 chainMm39,458 chainMm39,471 chainMm39,473 chainMm39,480 chainMm39,483 chainMm39,490 chainMm39,496 chainMm39,509 chainMm39,520 chainMm39,524 chainMm39,527 chainMm39,535 chainMm39,539 chainMm39,545 chainMm39,556 chainMm39,559 chainMm39,571 chainMm39,578 chainMm39,580 chainMm39,588 chainMm39,594 chainMm39,603 chainMm39,606 chainMm39,636 chainMm39,641 chainMm39,650 chainMm39,654 chainMm39,661 chainMm39,684 chainMm39,692 chainMm39,762 chainMm39,766 chainMm39,774 chainMm39,778 chainMm39,782 chainMm39,790 chainMm39,835 chainMm39,845 chainMm39,864 chainMm39,867 chainMm39,879 chainMm39,903 chainMm39,945 chainMm39,951 chainMm39,969 chainMm39,976 chainMm39,988 chainMm39,997 chainMm39,1018 chainMm39,1058 chainNetHg38,21 chainNetHg38,40 chainNetHg38,62 chainNetHg38,74 chainNetHg38,120 chainNetHg38,133 chainNetHg38,150 chainNetHg38,157 chainNetHg38,203 chainNetHg38,206 chainNetHg38,232 chainNetHg38,242 chainNetHg38,247 chainNetHg38,255 chainNetHg38,263 chainNetHg38,267 chainNetHg38,276 chainNetHg38,293 chainNetHg38,302 chainNetHg38,316 chainNetHg38,331 chainNetHg38,337 chainNetHg38,340 chainNetHg38,355 chainNetHg38,361 chainNetHg38,365 chainNetHg38,385 chainNetHg38,391 chainNetHg38,405 chainNetHg38,423 chainNetHg38,440 chainNetHg38,443 chainNetHg38,448 chainNetHg38,461 chainNetHg38,474 chainNetHg38,476 chainNetHg38,483 chainNetHg38,486 chainNetHg38,493 chainNetHg38,499 chainNetHg38,512 chainNetHg38,523 chainNetHg38,527 chainNetHg38,530 chainNetHg38,538 chainNetHg38,542 chainNetHg38,548 chainNetHg38,559 chainNetHg38,562 chainNetHg38,574 chainNetHg38,581 chainNetHg38,583 chainNetHg38,591 chainNetHg38,597 chainNetHg38,606 chainNetHg38,609 chainNetHg38,639 chainNetHg38,644 chainNetHg38,653 chainNetHg38,657 chainNetHg38,664 chainNetHg38,687 chainNetHg38,695 chainNetHg38,765 chainNetHg38,769 chainNetHg38,777 chainNetHg38,781 chainNetHg38,785 chainNetHg38,793 chainNetHg38,838 chainNetHg38,848 chainNetHg38,867 chainNetHg38,870 chainNetHg38,882 chainNetHg38,906 chainNetHg38,948 chainNetHg38,954 chainNetHg38,972 chainNetHg38,979 chainNetHg38,991 chainNetHg38,1000 chainNetHg38,1021 chainNetHg38,1061 chainNetMm10,20 chainNetMm10,39 chainNetMm10,61 chainNetMm10,73 chainNetMm10,119 chainNetMm10,132 chainNetMm10,149 chainNetMm10,156 chainNetMm10,202 chainNetMm10,205 chainNetMm10,231 chainNetMm10,241 chainNetMm10,246 chainNetMm10,254 chainNetMm10,262 chainNetMm10,266 chainNetMm10,275 chainNetMm10,292 chainNetMm10,301 chainNetMm10,315 chainNetMm10,330 chainNetMm10,336 chainNetMm10,339 chainNetMm10,354 chainNetMm10,360 chainNetMm10,364 chainNetMm10,384 chainNetMm10,390 chainNetMm10,404 chainNetMm10,422 chainNetMm10,439 chainNetMm10,442 chainNetMm10,447 chainNetMm10,460 chainNetMm10,473 chainNetMm10,475 chainNetMm10,482 chainNetMm10,485 chainNetMm10,492 chainNetMm10,498 chainNetMm10,511 chainNetMm10,522 chainNetMm10,526 chainNetMm10,529 chainNetMm10,537 chainNetMm10,541 chainNetMm10,547 chainNetMm10,558 chainNetMm10,561 chainNetMm10,573 chainNetMm10,580 chainNetMm10,582 chainNetMm10,590 chainNetMm10,596 chainNetMm10,605 chainNetMm10,608 chainNetMm10,638 chainNetMm10,643 chainNetMm10,652 chainNetMm10,656 chainNetMm10,663 chainNetMm10,686 chainNetMm10,694 chainNetMm10,764 chainNetMm10,768 chainNetMm10,776 chainNetMm10,780 chainNetMm10,784 chainNetMm10,792 chainNetMm10,837 chainNetMm10,847 chainNetMm10,866 chainNetMm10,869 chainNetMm10,881 chainNetMm10,905 chainNetMm10,947 chainNetMm10,953 chainNetMm10,971 chainNetMm10,978 chainNetMm10,990 chainNetMm10,999 chainNetMm10,1020 chainNetMm10,1060 chainNetMm39,21 chainNetMm39,40 chainNetMm39,62 chainNetMm39,74 chainNetMm39,120 chainNetMm39,133 chainNetMm39,150 chainNetMm39,157 chainNetMm39,203 chainNetMm39,206 chainNetMm39,232 chainNetMm39,242 chainNetMm39,247 chainNetMm39,255 chainNetMm39,263 chainNetMm39,267 chainNetMm39,276 chainNetMm39,293 chainNetMm39,302 chainNetMm39,316 chainNetMm39,331 chainNetMm39,337 chainNetMm39,340 chainNetMm39,355 chainNetMm39,361 chainNetMm39,365 chainNetMm39,385 chainNetMm39,391 chainNetMm39,405 chainNetMm39,423 chainNetMm39,440 chainNetMm39,443 chainNetMm39,448 chainNetMm39,461 chainNetMm39,474 chainNetMm39,476 chainNetMm39,483 chainNetMm39,486 chainNetMm39,493 chainNetMm39,499 chainNetMm39,512 chainNetMm39,523 chainNetMm39,527 chainNetMm39,530 chainNetMm39,538 chainNetMm39,542 chainNetMm39,548 chainNetMm39,559 chainNetMm39,562 chainNetMm39,574 chainNetMm39,581 chainNetMm39,583 chainNetMm39,591 chainNetMm39,597 chainNetMm39,606 chainNetMm39,609 chainNetMm39,639 chainNetMm39,644 chainNetMm39,653 chainNetMm39,657 chainNetMm39,664 chainNetMm39,687 chainNetMm39,695 chainNetMm39,765 chainNetMm39,769 chainNetMm39,777 chainNetMm39,781 chainNetMm39,785 chainNetMm39,793 chainNetMm39,838 chainNetMm39,848 chainNetMm39,867 chainNetMm39,870 chainNetMm39,882 chainNetMm39,906 chainNetMm39,948 chainNetMm39,954 chainNetMm39,972 chainNetMm39,979 chainNetMm39,991 chainNetMm39,1000 chainNetMm39,1021 chainNetMm39,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gap,118 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netHg38,18 netHg38,37 netHg38,59 netHg38,71 netHg38,117 netHg38,130 netHg38,147 netHg38,154 netHg38,200 netHg38,203 netHg38,229 netHg38,239 netHg38,244 netHg38,252 netHg38,260 netHg38,264 netHg38,273 netHg38,290 netHg38,299 netHg38,313 netHg38,328 netHg38,334 netHg38,337 netHg38,352 netHg38,358 netHg38,362 netHg38,382 netHg38,388 netHg38,402 netHg38,420 netHg38,437 netHg38,440 netHg38,445 netHg38,458 netHg38,471 netHg38,473 netHg38,480 netHg38,483 netHg38,490 netHg38,496 netHg38,509 netHg38,520 netHg38,524 netHg38,527 netHg38,535 netHg38,539 netHg38,545 netHg38,556 netHg38,559 netHg38,571 netHg38,578 netHg38,580 netHg38,588 netHg38,594 netHg38,603 netHg38,606 netHg38,636 netHg38,641 netHg38,650 netHg38,654 netHg38,661 netHg38,684 netHg38,692 netHg38,762 netHg38,766 netHg38,774 netHg38,778 netHg38,782 netHg38,790 netHg38,835 netHg38,845 netHg38,864 netHg38,867 netHg38,879 netHg38,903 netHg38,945 netHg38,951 netHg38,969 netHg38,976 netHg38,988 netHg38,997 netHg38,1018 netHg38,1058 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,117 netMm10,130 netMm10,147 netMm10,154 netMm10,200 netMm10,203 netMm10,229 netMm10,239 netMm10,244 netMm10,252 netMm10,260 netMm10,264 netMm10,273 netMm10,290 netMm10,299 netMm10,313 netMm10,328 netMm10,334 netMm10,337 netMm10,352 netMm10,358 netMm10,362 netMm10,382 netMm10,388 netMm10,402 netMm10,420 netMm10,437 netMm10,440 netMm10,445 netMm10,458 netMm10,471 netMm10,473 netMm10,480 netMm10,483 netMm10,490 netMm10,496 netMm10,509 netMm10,520 netMm10,524 netMm10,527 netMm10,535 netMm10,539 netMm10,545 netMm10,556 netMm10,559 netMm10,571 netMm10,578 netMm10,580 netMm10,588 netMm10,594 netMm10,603 netMm10,606 netMm10,636 netMm10,641 netMm10,650 netMm10,654 netMm10,661 netMm10,684 netMm10,692 netMm10,762 netMm10,766 netMm10,774 netMm10,778 netMm10,782 netMm10,790 netMm10,835 netMm10,845 netMm10,864 netMm10,867 netMm10,879 netMm10,903 netMm10,945 netMm10,951 netMm10,969 netMm10,976 netMm10,988 netMm10,997 netMm10,1018 netMm10,1058 netMm39,18 netMm39,37 netMm39,59 netMm39,71 netMm39,117 netMm39,130 netMm39,147 netMm39,154 netMm39,200 netMm39,203 netMm39,229 netMm39,239 netMm39,244 netMm39,252 netMm39,260 netMm39,264 netMm39,273 netMm39,290 netMm39,299 netMm39,313 netMm39,328 netMm39,334 netMm39,337 netMm39,352 netMm39,358 netMm39,362 netMm39,382 netMm39,388 netMm39,402 netMm39,420 netMm39,437 netMm39,440 netMm39,445 netMm39,458 netMm39,471 netMm39,473 netMm39,480 netMm39,483 netMm39,490 netMm39,496 netMm39,509 netMm39,520 netMm39,524 netMm39,527 netMm39,535 netMm39,539 netMm39,545 netMm39,556 netMm39,559 netMm39,571 netMm39,578 netMm39,580 netMm39,588 netMm39,594 netMm39,603 netMm39,606 netMm39,636 netMm39,641 netMm39,650 netMm39,654 netMm39,661 netMm39,684 netMm39,692 netMm39,762 netMm39,766 netMm39,774 netMm39,778 netMm39,782 netMm39,790 netMm39,835 netMm39,845 netMm39,864 netMm39,867 netMm39,879 netMm39,903 netMm39,945 netMm39,951 netMm39,969 netMm39,976 netMm39,988 netMm39,997 netMm39,1018 netMm39,1058 refGene,16 refGene,29 refGene,36 refGene,46 refGene,73 refGene,88 refGene,95 refGene,99 refGene,103 refGene,114 refGene,129 refGene,132 refGene,135 refGene,149 refGene,155 refGene,160 refGene,165 refGene,173 refGene,201 refGene,206 refGene,221 refGene,236 refGene,249 refGene,261 refGene,284 refGene,287 refGene,303 refGene,312 refGene,335 refGene,343 refSeqComposite,12 refSeqComposite,26 refSeqComposite,42 refSeqComposite,51 refSeqComposite,55 refSeqComposite,65 refSeqComposite,89 refSeqComposite,97 refSeqComposite,132 refSeqComposite,164 refSeqComposite,168 refSeqComposite,184 refSeqComposite,239 refSeqComposite,280 refSeqComposite,283 refSeqComposite,289 refSeqComposite,306 refSeqComposite,312 refSeqComposite,324 refSeqComposite,332 refSeqComposite,368 refSeqComposite,372 refSeqComposite,385 refSeqComposite,392 refSeqComposite,397 refSeqComposite,401 refSeqComposite,440 refSeqComposite,445 refSeqComposite,449 refSeqComposite,461 refSeqComposite,494 refSeqComposite,503 refSeqComposite,525 refSeqComposite,556 refSeqComposite,567 refSeqComposite,575 refSeqComposite,583 refSeqComposite,595 refSeqComposite,602 refSeqComposite,606 refSeqComposite,610 refSeqComposite,631 refSeqComposite,644 refSeqComposite,654 refSeqComposite,667 refSeqComposite,678 refSeqComposite,692 refSeqComposite,707 refSeqComposite,712 refSeqComposite,728 refSeqComposite,732 refSeqComposite,735 refSeqComposite,741 refSeqComposite,748 refSeqComposite,753 refSeqComposite,757 refSeqComposite,770 refSeqComposite,776 refSeqComposite,784 refSeqComposite,796 refSeqComposite,807 refSeqComposite,835 refSeqComposite,840 refSeqComposite,855 refSeqComposite,864 refSeqComposite,875 refSeqComposite,880 refSeqComposite,884 refSeqComposite,903 refSeqComposite,909 refSeqComposite,917 refSeqComposite,923 refSeqComposite,973 refSeqComposite,997 refSeqComposite,1001 refSeqComposite,1004 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1047 refSeqComposite,1059 refSeqComposite,1106 refSeqComposite,1111 refSeqComposite,1117 refSeqComposite,1126 refSeqComposite,1140 refSeqComposite,1155 refSeqComposite,1172 refSeqComposite,1181 refSeqComposite,1186 refSeqComposite,1194 refSeqComposite,1208 refSeqComposite,1216 refSeqComposite,1229 refSeqComposite,1252 refSeqComposite,1255 refSeqComposite,1271 refSeqComposite,1280 refSeqComposite,1287 refSeqComposite,1305 refSeqComposite,1313 refSeqComposite,1334 refSeqComposite,1341 refSeqComposite,1362 refSeqComposite,1365 refSeqComposite,1382 refSeqComposite,1392 refSeqComposite,1421 refSeqComposite,1444 refSeqComposite,1460 refSeqComposite,1465 refSeqComposite,1468 refSeqComposite,1493 refSeqComposite,1511 refSeqComposite,1524 refSeqComposite,1542 refSeqComposite,1567 refSeqComposite,1572 refSeqComposite,1576 refSeqComposite,1588 refSeqComposite,1593 refSeqComposite,1597 refSeqComposite,1601 refSeqComposite,1607 refSeqComposite,1639 refSeqComposite,1644 refSeqComposite,1647 refSeqComposite,1654 refSeqComposite,1664 refSeqComposite,1693 refSeqComposite,1722 refSeqComposite,1730 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainHg38,797 chainMm10,797 chainMm39,797 chainNetHg38,800 chainNetMm10,799 chainNetMm39,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netHg38,797 netMm10,797 netMm39,797 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainHg38,647 chainHg38,786 chainHg38,871 chainMm10,647 chainMm10,786 chainMm10,871 chainMm39,647 chainMm39,786 chainMm39,871 chainNetHg38,650 chainNetHg38,789 chainNetHg38,874 chainNetMm10,649 chainNetMm10,788 chainNetMm10,873 chainNetMm39,650 chainNetMm39,789 chainNetMm39,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netHg38,647 netHg38,786 netHg38,871 netMm10,647 netMm10,786 netMm10,871 netMm39,647 netMm39,786 netMm39,871 uniprot,1083 uniprot,1516 there HLTOGAannotvHg38v1,237 HLTOGAannotvHg38v1,280 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 uniprot,705 uniprot,1092 therefore gold,122 refSeqComposite,1630 uniprot,968 uniprot,1145 these HLTOGAannotvHg38v1,158 HLTOGAannotvHg38v1,187 HLTOGAannotvHg38v1,261 augustusGene,95 augustusGene,190 chainHg38,52 chainHg38,100 chainHg38,407 chainHg38,659 chainMm10,52 chainMm10,100 chainMm10,407 chainMm10,659 chainMm39,52 chainMm39,100 chainMm39,407 chainMm39,659 chainNetHg38,55 chainNetHg38,103 chainNetHg38,410 chainNetHg38,662 chainNetMm10,54 chainNetMm10,102 chainNetMm10,409 chainNetMm10,661 chainNetMm39,55 chainNetMm39,103 chainNetMm39,410 chainNetMm39,662 microsat,24 nestedRepeats,262 nestedRepeats,266 netHg38,52 netHg38,100 netHg38,407 netHg38,659 netMm10,52 netMm10,100 netMm10,407 netMm10,659 netMm39,52 netMm39,100 netMm39,407 netMm39,659 refSeqComposite,321 refSeqComposite,331 refSeqComposite,793 refSeqComposite,1291 refSeqComposite,1427 rmsk,235 simpleRepeat,33 uniprot,99 uniprot,130 uniprot,1160 thesis chainHg38,1017 chainMm10,1017 chainMm39,1017 chainNetHg38,1020 chainNetMm10,1019 chainNetMm39,1020 netHg38,1017 netMm10,1017 netMm39,1017 they chainHg38,324 chainMm10,324 chainMm39,324 chainNetHg38,327 chainNetMm10,326 chainNetMm39,327 netHg38,324 netMm10,324 netMm39,324 refSeqComposite,247 refSeqComposite,291 refSeqComposite,356 refSeqComposite,418 uniprot,179 thibaud-nissen refGene,364 refSeqComposite,1751 xenoRefGene,323 thick chainHg38,43 chainMm10,43 chainMm39,43 chainNetHg38,46 chainNetMm10,45 chainNetMm39,46 netHg38,43 netMm10,43 netMm39,43 refSeqComposite,993 refSeqComposite,1009 thin refSeqComposite,991 refSeqComposite,998 this HLTOGAannotvHg38v1,315 augustusGene,13 augustusGene,106 augustusGene,224 chainHg38,13 chainHg38,170 chainHg38,295 chainHg38,394 chainHg38,690 chainHg38,812 chainMm10,13 chainMm10,170 chainMm10,295 chainMm10,394 chainMm10,690 chainMm10,812 chainMm39,13 chainMm39,170 chainMm39,295 chainMm39,394 chainMm39,690 chainMm39,812 chainNetHg38,16 chainNetHg38,173 chainNetHg38,298 chainNetHg38,397 chainNetHg38,693 chainNetHg38,815 chainNetMm10,15 chainNetMm10,172 chainNetMm10,297 chainNetMm10,396 chainNetMm10,692 chainNetMm10,814 chainNetMm39,16 chainNetMm39,173 chainNetMm39,298 chainNetMm39,397 chainNetMm39,693 chainNetMm39,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 gap,8 gap,36 gap,44 gap,74 gap,115 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netHg38,13 netHg38,170 netHg38,295 netHg38,394 netHg38,690 netHg38,812 netMm10,13 netMm10,170 netMm10,295 netMm10,394 netMm10,690 netMm10,812 netMm39,13 netMm39,170 netMm39,295 netMm39,394 netMm39,690 netMm39,812 refGene,39 refGene,85 refGene,123 refGene,178 refGene,217 refGene,253 refGene,318 refSeqComposite,57 refSeqComposite,144 refSeqComposite,497 refSeqComposite,561 refSeqComposite,722 refSeqComposite,812 refSeqComposite,851 refSeqComposite,1385 refSeqComposite,1433 refSeqComposite,1621 refSeqComposite,1707 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those microsat,62 mrna,314 nestedRepeats,272 refGene,266 refSeqComposite,218 refSeqComposite,347 refSeqComposite,1234 uniprot,729 xenoRefGene,226 thousands chainHg38,250 chainMm10,250 chainMm39,250 chainNetHg38,253 chainNetMm10,252 chainNetMm39,253 netHg38,250 netMm10,250 netMm39,250 three uniprot,1227 three-step uniprot,989 through gap,108 nestedRepeats,97 refGene,128 refSeqComposite,727 refSeqComposite,1320 refSeqComposite,1358 rmsk,309 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,88 thus HLTOGAannotvHg38v1,279 time chainHg38,795 chainMm10,795 chainMm39,795 chainNetHg38,798 chainNetMm10,797 chainNetMm39,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netHg38,795 netMm10,795 netMm39,795 tissue mrna,150 mrna,185 mrna,200 tissues mrna,193 to HLTOGAannotvHg38v1,18 HLTOGAannotvHg38v1,90 HLTOGAannotvHg38v1,99 HLTOGAannotvHg38v1,106 HLTOGAannotvHg38v1,208 HLTOGAannotvHg38v1,255 HLTOGAannotvHg38v1,289 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainHg38,23 chainHg38,70 chainHg38,143 chainHg38,211 chainHg38,223 chainHg38,315 chainHg38,326 chainHg38,331 chainHg38,343 chainHg38,349 chainHg38,372 chainHg38,453 chainHg38,467 chainHg38,551 chainHg38,652 chainHg38,788 chainHg38,800 chainHg38,840 chainHg38,863 chainHg38,873 chainMm10,23 chainMm10,70 chainMm10,143 chainMm10,211 chainMm10,223 chainMm10,315 chainMm10,326 chainMm10,331 chainMm10,343 chainMm10,349 chainMm10,372 chainMm10,453 chainMm10,467 chainMm10,551 chainMm10,652 chainMm10,788 chainMm10,800 chainMm10,840 chainMm10,863 chainMm10,873 chainMm39,23 chainMm39,70 chainMm39,143 chainMm39,211 chainMm39,223 chainMm39,315 chainMm39,326 chainMm39,331 chainMm39,343 chainMm39,349 chainMm39,372 chainMm39,453 chainMm39,467 chainMm39,551 chainMm39,652 chainMm39,788 chainMm39,800 chainMm39,840 chainMm39,863 chainMm39,873 chainNetHg38,26 chainNetHg38,73 chainNetHg38,146 chainNetHg38,214 chainNetHg38,226 chainNetHg38,318 chainNetHg38,329 chainNetHg38,334 chainNetHg38,346 chainNetHg38,352 chainNetHg38,375 chainNetHg38,456 chainNetHg38,470 chainNetHg38,554 chainNetHg38,655 chainNetHg38,791 chainNetHg38,803 chainNetHg38,843 chainNetHg38,866 chainNetHg38,876 chainNetMm10,25 chainNetMm10,72 chainNetMm10,145 chainNetMm10,213 chainNetMm10,225 chainNetMm10,317 chainNetMm10,328 chainNetMm10,333 chainNetMm10,345 chainNetMm10,351 chainNetMm10,374 chainNetMm10,455 chainNetMm10,469 chainNetMm10,553 chainNetMm10,654 chainNetMm10,790 chainNetMm10,802 chainNetMm10,842 chainNetMm10,865 chainNetMm10,875 chainNetMm39,26 chainNetMm39,73 chainNetMm39,146 chainNetMm39,214 chainNetMm39,226 chainNetMm39,318 chainNetMm39,329 chainNetMm39,334 chainNetMm39,346 chainNetMm39,352 chainNetMm39,375 chainNetMm39,456 chainNetMm39,470 chainNetMm39,554 chainNetMm39,655 chainNetMm39,791 chainNetMm39,803 chainNetMm39,843 chainNetMm39,866 chainNetMm39,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netHg38,23 netHg38,70 netHg38,143 netHg38,211 netHg38,223 netHg38,315 netHg38,326 netHg38,331 netHg38,343 netHg38,349 netHg38,372 netHg38,453 netHg38,467 netHg38,551 netHg38,652 netHg38,788 netHg38,800 netHg38,840 netHg38,863 netHg38,873 netMm10,23 netMm10,70 netMm10,143 netMm10,211 netMm10,223 netMm10,315 netMm10,326 netMm10,331 netMm10,343 netMm10,349 netMm10,372 netMm10,453 netMm10,467 netMm10,551 netMm10,652 netMm10,788 netMm10,800 netMm10,840 netMm10,863 netMm10,873 netMm39,23 netMm39,70 netMm39,143 netMm39,211 netMm39,223 netMm39,315 netMm39,326 netMm39,331 netMm39,343 netMm39,349 netMm39,372 netMm39,453 netMm39,467 netMm39,551 netMm39,652 netMm39,788 netMm39,800 netMm39,840 netMm39,863 netMm39,873 refGene,55 refGene,153 refGene,189 refGene,196 refGene,220 refGene,246 refSeqComposite,54 refSeqComposite,114 refSeqComposite,155 refSeqComposite,167 refSeqComposite,173 refSeqComposite,305 refSeqComposite,308 refSeqComposite,323 refSeqComposite,367 refSeqComposite,439 refSeqComposite,493 refSeqComposite,675 refSeqComposite,700 refSeqComposite,739 refSeqComposite,752 refSeqComposite,774 refSeqComposite,823 refSeqComposite,830 refSeqComposite,854 refSeqComposite,901 refSeqComposite,907 refSeqComposite,915 refSeqComposite,921 refSeqComposite,934 refSeqComposite,976 refSeqComposite,1025 refSeqComposite,1058 refSeqComposite,1094 refSeqComposite,1105 refSeqComposite,1171 refSeqComposite,1437 refSeqComposite,1531 refSeqComposite,1584 refSeqComposite,1683 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 ucscToINSDC,22 ucscToRefSeq,17 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 toga HLTOGAannotvHg38v1,1 HLTOGAannotvHg38v1,4 HLTOGAannotvHg38v1,16 HLTOGAannotvHg38v1,44 HLTOGAannotvHg38v1,72 HLTOGAannotvHg38v1,326 HLTOGAannotvHg38v1,333 together chainHg38,123 chainMm10,123 chainMm39,123 chainNetHg38,126 chainNetMm10,125 chainNetMm39,126 netHg38,123 netMm10,123 netMm39,123 tolerate chainHg38,92 chainMm10,92 chainMm39,92 chainNetHg38,95 chainNetMm10,94 chainNetMm39,95 netHg38,92 netMm10,92 netMm39,92 tolerated uniprot,1257 too refSeqComposite,932 tool HLTOGAannotvHg38v1,17 mrna,520 refGene,346 refSeqComposite,1504 refSeqComposite,1733 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainHg38,508 chainMm10,508 chainMm39,508 chainNetHg38,511 chainNetMm10,510 chainNetMm39,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netHg38,508 netMm10,508 netMm39,508 refGene,133 refSeqComposite,733 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,93 top-level chainHg38,383 chainHg38,403 chainMm10,383 chainMm10,403 chainMm39,383 chainMm39,403 chainNetHg38,386 chainNetHg38,406 chainNetMm10,385 chainNetMm10,405 chainNetMm39,386 chainNetMm39,406 netHg38,383 netHg38,403 netMm10,383 netMm10,403 netMm39,383 netMm39,403 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainHg38,14 chainHg38,58 chainHg38,61 chainHg38,119 chainHg38,259 chainHg38,262 chainHg38,310 chainHg38,345 chainHg38,377 chainHg38,564 chainHg38,691 chainHg38,754 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,119 chainMm10,259 chainMm10,262 chainMm10,310 chainMm10,345 chainMm10,377 chainMm10,564 chainMm10,691 chainMm10,754 chainMm39,14 chainMm39,58 chainMm39,61 chainMm39,119 chainMm39,259 chainMm39,262 chainMm39,310 chainMm39,345 chainMm39,377 chainMm39,564 chainMm39,691 chainMm39,754 chainNetHg38,17 chainNetHg38,61 chainNetHg38,64 chainNetHg38,122 chainNetHg38,262 chainNetHg38,265 chainNetHg38,313 chainNetHg38,348 chainNetHg38,380 chainNetHg38,567 chainNetHg38,694 chainNetHg38,757 chainNetMm10,16 chainNetMm10,60 chainNetMm10,63 chainNetMm10,121 chainNetMm10,261 chainNetMm10,264 chainNetMm10,312 chainNetMm10,347 chainNetMm10,379 chainNetMm10,566 chainNetMm10,693 chainNetMm10,756 chainNetMm39,17 chainNetMm39,61 chainNetMm39,64 chainNetMm39,122 chainNetMm39,262 chainNetMm39,265 chainNetMm39,313 chainNetMm39,348 chainNetMm39,380 chainNetMm39,567 chainNetMm39,694 chainNetMm39,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 gap,9 gap,75 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netHg38,14 netHg38,58 netHg38,61 netHg38,119 netHg38,259 netHg38,262 netHg38,310 netHg38,345 netHg38,377 netHg38,564 netHg38,691 netHg38,754 netMm10,14 netMm10,58 netMm10,61 netMm10,119 netMm10,259 netMm10,262 netMm10,310 netMm10,345 netMm10,377 netMm10,564 netMm10,691 netMm10,754 netMm39,14 netMm39,58 netMm39,61 netMm39,119 netMm39,259 netMm39,262 netMm39,310 netMm39,345 netMm39,377 netMm39,564 netMm39,691 netMm39,754 refGene,19 refGene,40 refGene,86 refGene,124 refGene,136 refGene,179 refGene,208 refGene,319 refSeqComposite,17 refSeqComposite,45 refSeqComposite,145 refSeqComposite,149 refSeqComposite,311 refSeqComposite,315 refSeqComposite,328 refSeqComposite,335 refSeqComposite,470 refSeqComposite,498 refSeqComposite,508 refSeqComposite,562 refSeqComposite,723 refSeqComposite,736 refSeqComposite,754 refSeqComposite,813 refSeqComposite,842 refSeqComposite,867 refSeqComposite,1197 refSeqComposite,1212 refSeqComposite,1336 refSeqComposite,1708 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainHg38,768 chainMm10,768 chainMm39,768 chainNetHg38,771 chainNetMm10,770 chainNetMm39,771 genscan,56 genscan,74 mrna,37 mrna,360 netHg38,768 netMm10,768 netMm39,768 refGene,76 refGene,94 refSeqComposite,99 refSeqComposite,135 refSeqComposite,169 refSeqComposite,404 refSeqComposite,454 refSeqComposite,593 refSeqComposite,601 refSeqComposite,1137 refSeqComposite,1147 refSeqComposite,1223 refSeqComposite,1292 refSeqComposite,1371 refSeqComposite,1472 refSeqComposite,1579 refSeqComposite,1672 refSeqComposite,1697 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,54 traditional chainHg38,84 chainMm10,84 chainMm39,84 chainNetHg38,87 chainNetMm10,86 chainNetMm39,87 netHg38,84 netMm10,84 netMm39,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed refSeqComposite,430 transcript HLTOGAannotvHg38v1,118 HLTOGAannotvHg38v1,134 HLTOGAannotvHg38v1,258 HLTOGAannotvHg38v1,286 HLTOGAannotvHg38v1,297 refSeqComposite,532 refSeqComposite,882 refSeqComposite,910 refSeqComposite,918 refSeqComposite,989 refSeqComposite,1032 refSeqComposite,1053 refSeqComposite,1118 refSeqComposite,1128 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts HLTOGAannotvHg38v1,159 HLTOGAannotvHg38v1,188 HLTOGAannotvHg38v1,262 augustusGene,124 refGene,417 refSeqComposite,255 refSeqComposite,322 refSeqComposite,469 refSeqComposite,520 refSeqComposite,553 refSeqComposite,1804 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,376 translation augustusGene,57 translational genscan,29 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainHg38,565 chainHg38,589 chainHg38,898 chainMm10,565 chainMm10,589 chainMm10,898 chainMm39,565 chainMm39,589 chainMm39,898 chainNetHg38,568 chainNetHg38,592 chainNetHg38,901 chainNetMm10,567 chainNetMm10,591 chainNetMm10,900 chainNetMm39,568 chainNetMm39,592 chainNetMm39,901 netHg38,565 netHg38,589 netHg38,898 netMm10,565 netMm10,589 netMm10,898 netMm39,565 netMm39,589 netMm39,898 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainHg38,796 chainMm10,796 chainMm39,796 chainNetHg38,799 chainNetMm10,798 chainNetMm39,799 netHg38,796 netMm10,796 netMm39,796 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainHg38,332 chainMm10,332 chainMm39,332 chainNetHg38,335 chainNetMm10,334 chainNetMm39,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netHg38,332 netMm10,332 netMm39,332 refGene,171 refSeqComposite,805 xenoRefGene,131 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainHg38,904 chainMm10,904 chainMm39,904 chainNetHg38,907 chainNetMm10,906 chainNetMm39,907 netHg38,904 netMm10,904 netMm39,904 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,145 mrna,112 mrna,142 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainHg38,504 chainMm10,504 chainMm39,504 chainNetHg38,507 chainNetMm10,506 chainNetMm39,507 gap,121 gold,136 mrna,191 mrna,363 netHg38,504 netMm10,504 netMm39,504 refSeqComposite,871 refSeqComposite,886 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,429 typically HLTOGAannotvHg38v1,273 cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainHg38,1067 chainMm10,1067 chainMm39,1067 chainNetHg38,1070 chainNetMm10,1069 chainNetMm39,1070 netHg38,1067 netMm10,1067 netMm39,1067 ucsc mrna,444 nestedRepeats,245 refGene,1 refGene,3 refGene,323 refSeqComposite,43 refSeqComposite,47 refSeqComposite,70 refSeqComposite,192 refSeqComposite,333 refSeqComposite,477 refSeqComposite,483 refSeqComposite,591 refSeqComposite,1151 refSeqComposite,1201 refSeqComposite,1209 refSeqComposite,1413 refSeqComposite,1598 refSeqComposite,1712 ucscToINSDC,17 ucscToRefSeq,12 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,283 unambiguously refSeqComposite,1108 uncertain HLTOGAannotvHg38v1,235 uncheck refSeqComposite,163 undergone refGene,107 refSeqComposite,614 xenoRefGene,67 underlies genscan,142 underlying refGene,38 uniprot,1682 xenoRefGene,35 underneath chainHg38,832 chainMm10,832 chainMm39,832 chainNetHg38,835 chainNetMm10,834 chainNetMm39,835 netHg38,832 netMm10,832 netMm39,832 unexpected uniprot,766 ungapped chainHg38,443 chainMm10,443 chainMm39,443 chainNetHg38,446 chainNetMm10,445 chainNetMm39,446 netHg38,443 netMm10,443 netMm39,443 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 universal uniprot,1993 university chainHg38,918 chainHg38,952 chainHg38,998 chainHg38,1021 chainMm10,918 chainMm10,952 chainMm10,998 chainMm10,1021 chainMm39,918 chainMm39,952 chainMm39,998 chainMm39,1021 chainNetHg38,921 chainNetHg38,955 chainNetHg38,1001 chainNetHg38,1024 chainNetMm10,920 chainNetMm10,954 chainNetMm10,1000 chainNetMm10,1023 chainNetMm39,921 chainNetMm39,955 chainNetMm39,1001 chainNetMm39,1024 netHg38,918 netHg38,952 netHg38,998 netHg38,1021 netMm10,918 netMm10,952 netMm10,998 netMm10,1021 netMm39,918 netMm39,952 netMm39,998 netMm39,1021 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unlikely HLTOGAannotvHg38v1,288 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainHg38,226 chainMm10,226 chainMm39,226 chainNetHg38,229 chainNetMm10,228 chainNetMm39,229 netHg38,226 netMm10,226 netMm39,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainHg38,184 chainMm10,184 chainMm39,184 chainNetHg38,187 chainNetMm10,186 chainNetMm39,187 netHg38,184 netMm10,184 netMm39,184 unsure rmsk,263 untranscribed refSeqComposite,407 up gold,76 refSeqComposite,1439 refSeqComposite,1633 rmsk,146 update mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refGene,382 refSeqComposite,1769 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,341 updated refGene,42 uniprot,1566 xenoRefGene,39 us uniprot,687 uniprot,1441 use gold,87 mrna,109 refSeqComposite,35 refSeqComposite,1541 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used HLTOGAannotvHg38v1,105 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainHg38,293 chainHg38,665 chainHg38,696 chainHg38,787 chainHg38,839 chainHg38,872 chainMm10,293 chainMm10,665 chainMm10,696 chainMm10,787 chainMm10,839 chainMm10,872 chainMm39,293 chainMm39,665 chainMm39,696 chainMm39,787 chainMm39,839 chainMm39,872 chainNetHg38,296 chainNetHg38,668 chainNetHg38,699 chainNetHg38,790 chainNetHg38,842 chainNetHg38,875 chainNetMm10,295 chainNetMm10,667 chainNetMm10,698 chainNetMm10,789 chainNetMm10,841 chainNetMm10,874 chainNetMm39,296 chainNetMm39,668 chainNetMm39,699 chainNetMm39,790 chainNetMm39,842 chainNetMm39,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 genscan,159 gold,14 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netHg38,293 netHg38,665 netHg38,696 netHg38,787 netHg38,839 netHg38,872 netMm10,293 netMm10,665 netMm10,696 netMm10,787 netMm10,839 netMm10,872 netMm39,293 netMm39,665 netMm39,696 netMm39,787 netMm39,839 netMm39,872 refSeqComposite,233 refSeqComposite,243 refSeqComposite,996 rmsk,299 rmsk,341 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainHg38,278 chainHg38,477 chainMm10,278 chainMm10,477 chainMm39,278 chainMm39,477 chainNetHg38,281 chainNetHg38,480 chainNetMm10,280 chainNetMm10,479 chainNetMm39,281 chainNetMm39,480 microsat,20 netHg38,278 netHg38,477 netMm10,278 netMm10,477 netMm39,278 netMm39,477 user mrna,336 users refGene,188 refSeqComposite,822 uniprot,406 uniprot,684 xenoRefGene,148 uses HLTOGAannotvHg38v1,45 HLTOGAannotvHg38v1,87 rmsk,79 using HLTOGAannotvHg38v1,6 augustusGene,294 chainHg38,74 chainHg38,602 chainHg38,761 chainMm10,74 chainMm10,602 chainMm10,761 chainMm39,74 chainMm39,602 chainMm39,761 chainNetHg38,77 chainNetHg38,605 chainNetHg38,764 chainNetMm10,76 chainNetMm10,604 chainNetMm10,763 chainNetMm39,77 chainNetMm39,605 chainNetMm39,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netHg38,74 netHg38,602 netHg38,761 netMm10,74 netMm10,602 netMm10,761 netMm39,74 netMm39,602 netMm39,761 refGene,264 refSeqComposite,78 refSeqComposite,1152 refSeqComposite,1202 refSeqComposite,1215 refSeqComposite,1232 refSeqComposite,1304 refSeqComposite,1502 refSeqComposite,1587 refSeqComposite,1618 rmsk,15 rmsk,290 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,224 ustat windowmaskerSdust,66 usually nestedRepeats,192 utilities refSeqComposite,1525 refSeqComposite,1594 utility refSeqComposite,1590 refSeqComposite,1602 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 v HLTOGAannotvHg38v1,343 v3.1 augustusGene,7 valid mrna,157 validate refGene,191 refSeqComposite,825 xenoRefGene,151 validation genscan,107 value mrna,228 variant uniprot,2026 variants refSeqComposite,947 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 refSeqComposite,1074 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainHg38,1025 chainMm10,1025 chainMm39,1025 chainNetHg38,1028 chainNetMm10,1027 chainNetMm39,1028 netHg38,1025 netMm10,1025 netMm39,1025 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1131 refSeqComposite,1565 rmsk,58 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1337 refSeqComposite,1691 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view chainHg38,454 chainMm10,454 chainMm39,454 chainNetHg38,457 chainNetMm10,456 chainNetMm39,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,153 netHg38,454 netMm10,454 netMm39,454 viewed gold,79 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refGene,45 refSeqComposite,103 vs HLTOGAannotvHg38v1,2 w chainHg38,1027 chainHg38,1047 chainHg38,1095 chainMm10,1027 chainMm10,1047 chainMm10,1095 chainMm39,1027 chainMm39,1047 chainMm39,1095 chainNetHg38,1030 chainNetHg38,1050 chainNetHg38,1098 chainNetMm10,1029 chainNetMm10,1049 chainNetMm10,1097 chainNetMm39,1030 chainNetMm39,1050 chainNetMm39,1098 gold,148 netHg38,1027 netHg38,1047 netHg38,1095 netMm10,1027 netMm10,1047 netMm10,1095 netMm39,1027 netMm39,1047 netMm39,1095 waack augustusGene,318 want uniprot,690 was HLTOGAannotvHg38v1,317 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainHg38,646 chainHg38,664 chainHg38,785 chainHg38,830 chainHg38,838 chainHg38,858 chainHg38,870 chainHg38,895 chainHg38,913 chainHg38,948 chainMm10,646 chainMm10,664 chainMm10,785 chainMm10,830 chainMm10,838 chainMm10,858 chainMm10,870 chainMm10,895 chainMm10,913 chainMm10,948 chainMm39,646 chainMm39,664 chainMm39,785 chainMm39,830 chainMm39,838 chainMm39,858 chainMm39,870 chainMm39,895 chainMm39,913 chainMm39,948 chainNetHg38,649 chainNetHg38,667 chainNetHg38,788 chainNetHg38,833 chainNetHg38,841 chainNetHg38,861 chainNetHg38,873 chainNetHg38,898 chainNetHg38,916 chainNetHg38,951 chainNetMm10,648 chainNetMm10,666 chainNetMm10,787 chainNetMm10,832 chainNetMm10,840 chainNetMm10,860 chainNetMm10,872 chainNetMm10,897 chainNetMm10,915 chainNetMm10,950 chainNetMm39,649 chainNetMm39,667 chainNetMm39,788 chainNetMm39,833 chainNetMm39,841 chainNetMm39,861 chainNetMm39,873 chainNetMm39,898 chainNetMm39,916 chainNetMm39,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,411 mrna,441 netHg38,646 netHg38,664 netHg38,785 netHg38,830 netHg38,838 netHg38,858 netHg38,870 netHg38,895 netHg38,913 netHg38,948 netMm10,646 netMm10,664 netMm10,785 netMm10,830 netMm10,838 netMm10,858 netMm10,870 netMm10,895 netMm10,913 netMm10,948 netMm39,646 netMm39,664 netMm39,785 netMm39,830 netMm39,838 netMm39,858 netMm39,870 netMm39,895 netMm39,913 netMm39,948 refGene,291 refGene,320 refSeqComposite,499 refSeqComposite,1259 refSeqComposite,1709 rmsk,12 rmsk,262 simpleRepeat,68 ucscToINSDC,48 ucscToRefSeq,42 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,251 xenoRefGene,280 way uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1298 we refSeqComposite,76 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 weaker HLTOGAannotvHg38v1,198 webb chainHg38,927 chainHg38,964 chainMm10,927 chainMm10,964 chainMm39,927 chainMm39,964 chainNetHg38,930 chainNetHg38,967 chainNetMm10,929 chainNetMm10,966 chainNetMm39,930 chainNetMm39,967 netHg38,927 netHg38,964 netMm10,927 netMm10,964 netMm39,927 netMm39,964 weekly refGene,43 xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainHg38,575 chainHg38,583 chainHg38,590 chainHg38,597 chainHg38,609 chainHg38,682 chainHg38,756 chainHg38,936 chainHg38,980 chainHg38,994 chainMm10,575 chainMm10,583 chainMm10,590 chainMm10,597 chainMm10,609 chainMm10,682 chainMm10,756 chainMm10,936 chainMm10,980 chainMm10,994 chainMm39,575 chainMm39,583 chainMm39,590 chainMm39,597 chainMm39,609 chainMm39,682 chainMm39,756 chainMm39,936 chainMm39,980 chainMm39,994 chainNetHg38,578 chainNetHg38,586 chainNetHg38,593 chainNetHg38,600 chainNetHg38,612 chainNetHg38,685 chainNetHg38,759 chainNetHg38,939 chainNetHg38,983 chainNetHg38,997 chainNetMm10,577 chainNetMm10,585 chainNetMm10,592 chainNetMm10,599 chainNetMm10,611 chainNetMm10,684 chainNetMm10,758 chainNetMm10,938 chainNetMm10,982 chainNetMm10,996 chainNetMm39,578 chainNetMm39,586 chainNetMm39,593 chainNetMm39,600 chainNetMm39,612 chainNetMm39,685 chainNetMm39,759 chainNetMm39,939 chainNetMm39,983 chainNetMm39,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 gc5BaseBw,79 mrna,387 mrna,435 netHg38,575 netHg38,583 netHg38,590 netHg38,597 netHg38,609 netHg38,682 netHg38,756 netHg38,936 netHg38,980 netHg38,994 netMm10,575 netMm10,583 netMm10,590 netMm10,597 netMm10,609 netMm10,682 netMm10,756 netMm10,936 netMm10,980 netMm10,994 netMm39,575 netMm39,583 netMm39,590 netMm39,597 netMm39,609 netMm39,682 netMm39,756 netMm39,936 netMm39,980 netMm39,994 refGene,258 refGene,274 refGene,315 refSeqComposite,100 refSeqComposite,248 refSeqComposite,357 refSeqComposite,419 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1226 refSeqComposite,1242 refSeqComposite,1283 ucscToINSDC,35 ucscToRefSeq,29 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wget uniprot,1903 uniprot,1913 wheeler mrna,496 when augustusGene,188 augustusGene,238 chainHg38,405 chainMm10,405 chainMm39,405 chainNetHg38,408 chainNetMm10,407 chainNetMm39,408 mrna,89 mrna,99 mrna,396 netHg38,405 netMm10,405 netMm39,405 refGene,276 refSeqComposite,1088 refSeqComposite,1244 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,236 where chainHg38,191 chainMm10,191 chainMm39,191 chainNetHg38,194 chainNetMm10,193 chainNetMm39,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,94 netHg38,191 netMm10,191 netMm39,191 uniprot,1192 whether chainHg38,854 chainMm10,854 chainMm39,854 chainNetHg38,857 chainNetMm10,856 chainNetMm39,857 netHg38,854 netMm10,854 netMm39,854 which augustusGene,159 augustusGene,227 chainHg38,322 chainHg38,613 chainHg38,819 chainMm10,322 chainMm10,613 chainMm10,819 chainMm39,322 chainMm39,613 chainMm39,819 chainNetHg38,325 chainNetHg38,616 chainNetHg38,822 chainNetMm10,324 chainNetMm10,615 chainNetMm10,821 chainNetMm39,325 chainNetMm39,616 chainNetMm39,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,176 nestedRepeats,31 nestedRepeats,87 netHg38,322 netHg38,613 netHg38,819 netMm10,322 netMm10,613 netMm10,819 netMm39,322 netMm39,613 netMm39,819 refSeqComposite,46 refSeqComposite,261 refSeqComposite,1478 refSeqComposite,1506 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 uniprot,158 uniprot,1380 uniprot,1768 while chainHg38,214 chainMm10,214 chainMm39,214 chainNetHg38,217 chainNetMm10,216 chainNetMm39,217 netHg38,214 netMm10,214 netMm39,214 white gap,104 whole HLTOGAannotvHg38v1,63 chainHg38,462 chainMm10,462 chainMm39,462 chainNetHg38,465 chainNetMm10,464 chainNetMm39,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,149 netHg38,462 netMm10,462 netMm39,462 refSeqComposite,1494 whose refSeqComposite,220 refSeqComposite,349 refSeqComposite,963 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,214 will mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,178 refGene,245 refSeqComposite,172 xenoRefGene,205 with HLTOGAannotvHg38v1,359 augustusGene,127 augustusGene,322 chainHg38,42 chainHg38,205 chainHg38,216 chainHg38,585 chainHg38,697 chainHg38,773 chainHg38,897 chainHg38,929 chainHg38,961 chainHg38,1098 chainMm10,42 chainMm10,205 chainMm10,216 chainMm10,585 chainMm10,697 chainMm10,773 chainMm10,897 chainMm10,929 chainMm10,961 chainMm10,1098 chainMm39,42 chainMm39,205 chainMm39,216 chainMm39,585 chainMm39,697 chainMm39,773 chainMm39,897 chainMm39,929 chainMm39,961 chainMm39,1098 chainNetHg38,45 chainNetHg38,208 chainNetHg38,219 chainNetHg38,588 chainNetHg38,700 chainNetHg38,776 chainNetHg38,900 chainNetHg38,932 chainNetHg38,964 chainNetHg38,1101 chainNetMm10,44 chainNetMm10,207 chainNetMm10,218 chainNetMm10,587 chainNetMm10,699 chainNetMm10,775 chainNetMm10,899 chainNetMm10,931 chainNetMm10,963 chainNetMm10,1100 chainNetMm39,45 chainNetMm39,208 chainNetMm39,219 chainNetMm39,588 chainNetMm39,700 chainNetMm39,776 chainNetMm39,900 chainNetMm39,932 chainNetMm39,964 chainNetMm39,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,52 gc5BaseBw,35 gold,51 gold,141 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netHg38,42 netHg38,205 netHg38,216 netHg38,585 netHg38,697 netHg38,773 netHg38,897 netHg38,929 netHg38,961 netHg38,1098 netMm10,42 netMm10,205 netMm10,216 netMm10,585 netMm10,697 netMm10,773 netMm10,897 netMm10,929 netMm10,961 netMm10,1098 netMm39,42 netMm39,205 netMm39,216 netMm39,585 netMm39,697 netMm39,773 netMm39,897 netMm39,929 netMm39,961 netMm39,1098 refGene,267 refGene,311 refSeqComposite,223 refSeqComposite,352 refSeqComposite,488 refSeqComposite,950 refSeqComposite,979 refSeqComposite,1038 refSeqComposite,1065 refSeqComposite,1091 refSeqComposite,1130 refSeqComposite,1235 refSeqComposite,1279 refSeqComposite,1397 rmsk,111 rmsk,225 simpleRepeat,52 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,227 xenoRefGene,271 within gold,116 mrna,82 mrna,420 refGene,122 refGene,300 refSeqComposite,721 refSeqComposite,1268 simpleRepeat,37 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,82 xenoRefGene,260 without uniprot,139 wj chainHg38,1041 chainHg38,1083 chainMm10,1041 chainMm10,1083 chainMm39,1041 chainMm39,1083 chainNetHg38,1044 chainNetHg38,1086 chainNetMm10,1043 chainNetMm10,1085 chainNetMm39,1044 chainNetMm39,1086 mrna,515 netHg38,1041 netHg38,1083 netMm10,1041 netMm10,1083 netMm39,1041 netMm39,1083 refGene,341 refSeqComposite,1728 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,458 refGene,331 refSeqComposite,1718 xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 wrench refSeqComposite,749 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,353 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,355 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 yap chainHg38,1024 chainMm10,1024 chainMm39,1024 chainNetHg38,1027 chainNetMm10,1026 chainNetMm39,1027 netHg38,1024 netMm10,1024 netMm39,1024 years uniprot,933 yet refSeqComposite,672 refSeqComposite,697 yip uniprot,2010 yl uniprot,2011 you mrna,177 refGene,244 refSeqComposite,171 refSeqComposite,1347 refSeqComposite,1455 refSeqComposite,1539 refSeqComposite,1559 refSeqComposite,1629 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,204 younger nestedRepeats,94 your refSeqComposite,1521 refSeqComposite,1634 uniprot,1783 yp refSeqComposite,228 refSeqComposite,231 refSeqComposite,241 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainHg38,1087 chainMm10,1087 chainMm39,1087 chainNetHg38,1090 chainNetMm10,1089 chainNetMm39,1090 netHg38,1087 netMm10,1087 netMm39,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainHg38,925 chainHg38,1086 chainMm10,925 chainMm10,1086 chainMm39,925 chainMm39,1086 chainNetHg38,928 chainNetHg38,1089 chainNetMm10,927 chainNetMm10,1088 chainNetMm39,928 chainNetMm39,1089 netHg38,925 netHg38,1086 netMm10,925 netMm10,1086 netMm39,925 netMm39,1086 zheng chainHg38,924 chainMm10,924 chainMm39,924 chainNetHg38,927 chainNetMm10,926 chainNetMm39,927 netHg38,924 netMm10,924 netMm39,924 zinc uniprot,326 zoomed-in genscan,103