##maf version=1 scoring=multiz a score=114880.000000 s hg15.chr12_random 1725 863 + 590431 CCCTGGGCACCCTCGTCC-CCTCCCTGGGCGACACCTGCAGGCTCCTAACCTCGTTCTGGTTCCCT---------CTCCGCATGCCCCGGGGATCCCTGCCTCTTCGCGTGCTCCCGACACCACAGCCCGGCCCAGGCTGCGGGATCG---------CCGGCCGACAGGCAGTCGTGAGCCCCCAGACAGCCCGGCCGTA---T-----TCTTTCGCCGCCTGGATGGTAACCAAATCTTCACCCTTTTCGGAGTGTGGCGGTGG----------GGGCTGCTGGCTTGGCGAAAAAACCCTCACAGCGTTTTCTCCCAAATTGATCTTGTCCACTTGCGGTCACTTGGGGGTTGGCAG---AGTCTCCTTGATCCAAAATAGAATGGTCGAGCCTACTTGTAGATTGCAGCCGGTAAAGCTCTGAG----GATTGGTCACAGCCTTTTCAGGCCACAGGTGCTCCCTGAGGCCTATTCCAGTTATACCTTTTGGGGGTGGGAGACTACGGAGAGAGCT-------------------------GGCAGAAAGGGCTA------------AATATAGTTCACAAGCAGTCAGAAACTTTACCATAATGTACGCCTTAGGAGATTT-TGTGTATGCTATGGGATATTGTGCCGTTAAAACTCTTTGAATGAATAAAGCAATGCGCTCGCTTTGAAATTGAAGGACGTGTTGTCATTGA-ACTTGGGTTCAAATGTCACT---TTGATTTCCCTTCCCAGGTGAGACTAAG-TTTTTGGTTACTT-TAAATTTCATATGCTGAGGCAGAGTTTGGCATTGGAACAAATGATTCTGTAACTTTTTTATGACAGTAATTATTT---------------------------------------------TTT-----------------------AATCTGATC-----------------------------------------------------------------------------TCAGA----ATAATTGCCTAGT-ATCTTTGGTTCTACTACATGTAGTGTTTGTGAACATGGGACTGGAAAGGTTGTTCTCAGTTT s mm3.chr5 119619818 1025 + 149719773 CCCCACGCGACCTCGTCCTCCTCGTTCGGCGACACCTGCAGGCTGCTAACCTCGCTTTGCCTCACTCCCTCCTCCCTCTTGGCGCCCCGGGAATCCCTGCTTCTTGGCGAGCTCCTGACGCCACGGCCCGGTCCCAGCTGCGGGATCCGGGAGCAGACCCGAAGACAGACGGCGGGGAGCCCACAGCC--CCCCGTCGTGGGTT-----CTTCCCGCTGCCTGGACCGTCCTCGGATTGCCATCCTTTTCGGGAAG-GGCCGTGGGGTTGTGGGTGGACTGCTGGCCTGGTT-AGAAATTCTAGCAGTGCTTTCTCCCTAACCCAGCTTGTCTACTTGAGGTCACTTGGGGG-TGGCAGAAAGGTCTCCTTGACCCAAAATAGAATGGCTGGACCTGCTTGTAGGCTGCAGCCAAAAAGGCTGTGAG----ACTCGGTCACAG-CTTTTTAGGCCACAGGTGCTTCCTAAGATCTATCCCAGTTACTAGCGgagagagagagagagagaggagagagagagaaagagagagagagagagagagagagagagagagCTGTCCAAAGGCCTAAACA-AATGCACAAGCTGTCAGAAACTTTACC-TAGGGTATGCCCTTGGAGAGTTCCCTGTA---------------TGCCACTAAAGGTCTTTCAGTTCGGGAA-----GCTCTTCTTTTGATATTGAAGGACAGACTGTCATTGGCGCCTAGGTTCAAATGTCACG---TTGGTTTCACTTCTCCAGTGACATTGAG-TTTATGGTTACTTAAAAGCTTCATAGGCTTAGACAAAATATGGCATCGGAGCAAATAAT-------AGTTTTTGTGACAGTAATTGTTTGCCGTTTTTTTTTTCTCCTTCTTTCTTTTTCGTGTGAACAGTGTCTTTGTAGCTCGTTTGCTGTTTAGTGCAGGCTGACCTTCAGCTCT-----------------TGCTGAAGATACAGGTGTGTGCC-CAGCTCCCAGCTCTTGACATTTTCAAATCAGA--------TAACCTTGTGAGTTTTGGTTTTGTCACATGGAGTGTTTGTAAGCATGATACCGGG--GTTGGTTCTCATTTT s rn2.chr12 10307297 978 - 46874691 CCCCACGCGACCTCGTCCTCCTCGCTCGGCGACACCTGCAGGCTGCTAACCTCGCTTTGCCTCGCTCCCTCCTCCCTCTGCGCGCCCCGGGAATCCCTGCTTCTTGGCGAGCTCCTGACTCCACGGCCCGGCCCTAGCTGCGGGATCC-GGAGCAGATCCGAAGACAGCCGGC-GGGAGCCCACAA----CCCCGTCGTGGGTTTTTCCCTTCCCGCTGCCTGGACCGTCCCCGGATTTCCATCCTTTTCAGGAAG-GGCCATGG-----------------------GGTT-AGAAATTCTAGCAGTGCTTTCTCCCAAACGAAACTTGTGTACTTGAGGTCACTT-GGGG-TGGCAG-AAGGTCTCCTTGACCCAAAATAGAATGGCTGGACCTGCTTGTAGACTGCAGCCAAAAAGGCTTTGAGACTCACTCGGTCACAG-ATTTTTAGGCCACAGGTGCTTCCTAAGATCTATCCCAGTTACTCCTTTGGGAAGAG--------------------------------------------GAGACAGAGAGCTGTCCAAAGCCC--AAC--AATGCACAAGCTGTCAGAAACTTTACC-TAGTGTATGCCCTTGGAGAGTT-TGTGCA---------------TGCCACTAAAGGTCTTTCAGATCCTGAA-----GCTCTTCCTTTGATATTGAAGGACATACTGTCATTGGCTCCTAGGTTCAAATGTCACACGCTTGGTTTCACTTCTCCAGTGACACTGAGTTTTTTGGTTACTT-GAAGCTTCATACGCTTAGACACAATATAGCATTGGAGCAAATAAT-------CGTTTTTGTGACAGTAATTGTTTGGTGGGTTTTCtttct---------tttttcttgagaacagtgt-tttgtagcccgcttgctgttcaggggaggctgaccttcagctcctgcttccacctcccaagtgctgaggatacaggtgtgggccgtaactcccagcTCATGACATTTTAAAATCAGATACCAGAGTAACCTTGTAAGTTTTGGTTTTGTCACCTGCAGTGTTTGTGAGCATGATACTGAGAAGGTGGTTCTCATttt a score=19236.000000 s hg15.chr12_random 2589 211 + 590431 ATTTATGAATGACCCCATTACCTGGGTTGAAGAAAAAGCATTTAATGTTTAGGCAACGCTATTGATATTAACATGAGAGGGAGA-CTTAGAAAGGTCCTGCAGCTTGCAGATTGAAATTGTACAAATCCACCCCGAAGTC---------------------------AGCTGTCAGTGGCTGTCT-------TCCCTGATACATTTAGAAGTGCCTCACTCAATGAGCTTGTGACCTGTGCTGCGt s mm3.chr5 119620844 209 + 149719773 ATTGATGAATAACCTCTTCATCTGTGTT-GAGAAAAATCTTGTAGTATTTAGACCGCACTATTGGTACCAACCTTTCAGAGAG--CCTCCCTAGGT---------------TTGGAAGTATACAGATTCGCCGTGAAGTCTAT-------------------TGAGAGGCTGCCGTTTGCGGCTTCTGCAAGTCACCTAGGCAGCCAGCAGCCCTTCGCTTGGGGAACTTAGGGTCTGTGCTGCCT s rn2.chr12 10308481 223 - 46874691 ATTGATGAATAACCCCATTATCCATTTTTGAGAAAAATCTTTTAGTATTTAGACAGCACTAG-GACACCAAGCTTTCAGAGAGAGCTTCCCTAGGT---------------TTGGAAGTATGCAAATTCACCATGAAGTCTGTCTAGACTCAGGGTCATTTTTGAGAGGCTGCCAGGAGCTGCTTCTGCAAGTCACCAA-------AGCAGCCTTTCTCTTAGGGAGCTTAGGATCTGTGCTGCTT a score=23244.000000 s hg15.chr12_random 6250 318 + 590431 AGGAAAACAGAATGACTTTCAACAAATACTGAAACATGCTACAGGCCAGGTAGCCAGAAAATTAATCTGACTACATTGCCCTGTTCTCTGAGCATTTTTACAATACTAGAAATAGGCTCAA-AATCCCATT-GGTCAATAAAATAGTTTCTCACAGGAAAAACCCATTGTACTTCTTAAAAGGGTTCACCTATCAAGTATCAATTGCTAAAACTTGCTATAAGGCTAAAT-----TTAAATTAGCTATCTCTGAATACTAAGTTGGTCCCATCCTGAATTAATGAGCCTCT-TCTAAGTGCT-CCTAGTTT-----TTCAAAAAGCCTTGAa s mm3.chr5 119594401 293 + 149719773 AGACAAGCGGACTGATTTTCAGGGAAGGCTAAAC-ACGCTCTGGTCTTGGAGGCCAGGAAGGGACCCCGCTAGC----ACCTGCTCTCCAGGCTATTTCACAATGCTGGAGGA-AATTCAGTTGCCCCATTAGGCTGATAAAATGGTTTCTCCTGGGAAGAGTCCATTGTGTTTC-CAAAAGGACT-----------------------AAGCATGCTAGGTGGCTGTCCTGCATTTCAGTCAGCTCCATCT---------GCTGGTCCCATCCTGAGAGCTTAAACCTTTCTTAAAGGGCTGTTTTGTTTTGTGTTACAAAAACCTCTGAC s rn2.chr12 10280049 278 - 46874691 AGACAAGCAGACTGATTTTCAAGGAAGGATAAACCATGCTCTGGTACTGGAGGCTAGAAAAGGACCCT-CCAGC----CCTTGCCCTCCTACCTATTTCACAGTGTTTGAGGGGAATTCAGTTTTCCCACTGGGTTGATAAAACGGTTTCTCATGGGAAGAGTCCATTGTGTTTC-CAAAAGGACT-----------------------AAGCATGTCAGGTGACTCTTCTTC--TGCAGTAAGCT------------------GGTCCCATCCTGAACGC--AAACCTTT-TCAAAGGGCTGTTTTGTTTTGT--TACAAAAACCCCTGAA a score=9798.000000 s hg15.chr12_random 7035 217 + 590431 CTATG------TCCACAACAAAAGCTGTGAAATT-------AAAATGCACTTTT-------CACCCTAGGCT---AT---ACTAATTCACTGATACAAAAAATGTGAC-CACTGTCT----ACAACTCAAATTGAAATGTAATTCAATCTTCAAACACAGAGGTTTCATTACATTAT---TTTAATGTATATTCTCTCTTCTCTTTTGCCTGCACAGTCACCTGGCTGAATGCAAATAAGGGATAGCTACt s mm3.chr5 119595236 225 + 149719773 Ccatgcatacatgcac-acatacactatctatctatctatatatatacatacatacacacacacacacTGCC---ATGAGACTATTTCACAGGTACAAAGAG-GTGACACATTATCTGTGCACAGCTCAAAT----------ATTAATTTCCAAAC--------TTCATAACACTCTAGAGGCAACACACA--CGTGTCCCTCCATCACCCACACTGTTGAGCAGCTGCACGGG-ACAAGTGACTGCTTCT s rn2.chr12 10280764 192 - 46874691 cggtg------------------------------------tatatgtacacttacacacacacCCCTAGGCCAAATGAGACTATTTCCCAGGTACAAGCTG-GTGACACATTATCCATGCACAGCTCAAAT----------ATCAATTTCCAAAC--------TTCATAACACTCTAGAGGCAACACACA----TGCCCCTCTGTTGCCCACACTGTTGAGAGGCTGCATGGGGACAAATGACTGCTTCT a score=48923.000000 s hg15.chr12_random 7549 484 + 590431 GATAGCTACTTTTTTACATATTTGTTTGGACGGTATGGCTT--------------CAGAACGACGTAAAACACTGGAAATCAGGTTTGGGTTTTTAAGCCTGGGAAAGTTTTCCCTTTCTCCAAATTGTATTATCCTGGTCAAATTTTT-TCAAAATTGCATGTGTCATACGTA------AA---------CTTACGTGACAACTGGAACTGAGCAGGCAGAAAAGACACTGAAATCCACGGAGCTGCAGTCGGGATCACAGCAGCAGTTGATGTCACACTGTGCTGGGGATAAGTCACAGACACAGAGAACAGCAACTGCAGAAAAAAGAGGGGTAGGATCCAGAACATCACCATCAGCAGGTGGTGACTGCCCCCTGCCACCACAGTGTACCATAAGTCAATTTCATAAAAAAGATCCATTTTATTTTTCCTATTGCACTTTGGGGGAAATTTGTGAAGTGGAAATGAGTCAGTTTGAGC--------ATCCCACAATCAGAGGTTTCCCCAAAGTGGCT s mm3.chr5 119595461 428 + 149719773 GACAAC---------ACAGG---GTTTTGCCCACAGGGCTT--------------CTGAGGAGTGTGGAACATGA------------------------------------TTCCTGTCCCCACATTTTATCATCCTGGCCAAACGGCCATCAAACCTCCCTGTCGTATGCTTACGTGACAATGTCGTATGCTTACGTGACAACTGGGACTGAGCAGGCAGAGAAGATGCTGAAATCTGCAGGGCTGCAGTCAGGGTCGCAACAGCAGTTGACATCACACTGTGCCGGAAGCAGGTCGCAGACACACAGAGCAGCAACTAC-GAGACAGGTCAGTGAGGGTTCAGAG------GGTGAGTGAGATGTTACTGCTCCCTGCCACCAAGGGATGCCAGAAATCAATGTCACAACGGTGTCTGG--------TTCCTACT------GGGGGAAAAGTCGCTCA-TGGACACAAGTCACTTTGAGT--------ACCCCAC--CCCAGTGTCTCCCTAAGGTGGCT s rn2.chr12 10280956 429 - 46874691 GACAGC---------ACATG---GCTTTGCACACAGGGCTTTGCAAACAGGGTTTCTGAAGAGTGTGGAACACAA------------------------------------TTCTTGTCCCCAAATTTAATCATCCTGGCCAAATGGCCATCAAACCCCCCTGTCATATGCTTACGTGACAA---------------------CTGGGATGGAGCAGGCAGAGAAGACGCTGAAATCCCCAGGGCTGCAGTCAGGGTCACAACAGCAGTTGATATCACACTGTGCAGGAAGCAGGTCGCAGACACACAGAGCAGCAACTAG-GAAACAGGACAGTGGGGGTCCAGAG------GGTAAGTAGGTTGTTACTGCTCCCTGCCACCAA-GGACTCCAGAAACCAATGTCACAAAAGCATCCGA--------TCCCTATTG-----GGGGGAAAAGTTGCTCA-TAGACATCAGTCACTTTGAGTACATGAGGACCTCAC--CTCAGTGTCTCTCTAGGGTAGCT a score=31890.000000 s hg15.chr12_random 14852 270 + 590431 CAAGTTGACTTTGATTTGTGAATTGCATGAACTTTGATCACGGTTTAGCATTTGGAGAGCTCAGACTCTGGCTTTACCCATAGAATGGGGGTATATTTTATTAGTGAAAACAAATGAAAAG-AACAGGGCCCTTATTGTATAGGAGATATGC--TTCTTTGCGGGTGGAGG-TAGATAAATTGAATGA---------AGACCCATAAGATAAGAAAACAG----TGAGGCTTATGCCTTGAAACTTTTGTTTCTGAGAAACAGGTTTGCTTGAGAAATCAAGGAGGA s mm3.chr16 47260402 284 - 98986639 CAAGTTGCTTTGGATTTATTCATTTCATGGGCTATGACCATGGCTTTAGATTTAAGCAACACTAAGAACAGCTTTACTAGCAGAATGAGGAGGGATTTTATCAATGAACA-AACTGCAAAGCAATGAAGGCCTAATTATATGGAGACTATGCAATCCTTTTAGATTGAAGGGGAGAAAGACTCAGTAATTTTTTTATACACACAAAGATTAAGAAAGTAATTTTTAAAGCCTAGAATTAAAACATGCCATT--TACTATTCAGGCTTGCTCTGAAAACCCAGGAGGA s rn2.chr11 51097583 283 - 88445885 CAAGTTGCTTTGGATTTATTCATTTCATGGGCTATGACCATGGCTTTAGATTTAAGTAACACTAAGAATGGCTTTACTAGCAGAATGAGAAGGGATTTAATCAATGAAC--AACTGCAAAGCAATGAAGGCCTAATTATATGGAGAATATGCAATACTTTTATATTGAAGGAGAGAAAAATTCAGTAATTTTCTTATATACTCAAAGATTAGGAAAGTAATTTTTAAAGCCTAAAATTAAAATATGCCACT--TAGTATTCAGGCTTGCTCTCAAACCCCAGGAGGA a score=153355.000000 s hg15.chr12_random 21009 732 + 590431 TTGAGGAGGCCCTTACGGAAGTCCTTCCCGAAGCCGCAGCCGGCCGTCACCAGTCCGTAGTcgccgccg------------------ccgccgccgccgGCCCTGGGGTCGGTCTGCGAGAGGCCGCCGAGCACGGCGC-GGCCACCAGCCGCCCGTACGAGAGGACCGAGAACATcgccgccgccgcccccccgaggaggcggggggccgggggAGCAGGAGGACGCGGAGGCCCGGAGCCGGCTCTCTCCTCAGCCGCAGTCGCACCGCCGCTGGGGCGCTACCTCAGGGCGGCGCGCAGTGGCCGCCGCCGCCCCTGCCCGACGCGCGGGGCCTCGCACGCGCTCAGCCGCGCGCACCGGAGCCAGAGCGAGGTCAGAAGCGGCGGCTCCTCCGCCTCAGCCCAACTGAAGTCCCGGCTGCAGCGGCCGCCGCCGCCGCCATCTTCCGCTCCACTAGCGTGTTCCGGGCGGTGCCGGCAGCACCGCCCCCTCCCATGCCCTGCCCCTAGCCCCG-CCCCGATTCACCGCTCAGGCCCAAGCCCAGCCCCTT-GGGCTCGCTGCCTTATGCAGTCACCAAGGTTGAACATGCGCAGAGGGTGCGGACGCAGTGTCTCTTGGGAATTATAGTCCCGGAGTCGTAGTCACTTTTGACTTGGCTGCCAAAGATTTAGGACCTAGGGGGATTCCTCAGACGCGGGACCTATGTTAAGTTAGTAGGAATTGCAGGTGGGCCACG----TGAGGGTTTTCT s mm3.chr5 30100282 739 - 149719773 TTGAGCAGGCCCTTACGGAAGTCCTTGCCGAAGCCGCAGCCCGCCGTCACCAACCCGTAGTcgccgctgctgccaccaccgccgccgccgccgccgccCGCCCTGGGGTCGGTCTGCGACAGGCCGCCGAGCACGGCACGGGCCACCAGGCGTCCATACGACAAGACCGAGAACATcgccgccgccgcccccccgaggaggcgcggggcccggggcgccggAGGACGCCGAGGCCCGGAGCCGGCTCTTTCTTCCGCCGCAGCCG---CGCCGCCGGGGCGTT-CCTCAGGGCGGCGCGCACTGGCCACTGCCGCCCCTGCCCGCCGCACGGGGCCTCGCACACGCTTTACCGCACGCACTGGAGCCAGAGCGAGGTCAGAGCCGGCGGCTCCTCCGCCTCAACCACACTGGGgtcccggctgcagccgccgccgccgccgccatcttccgctccactagcgtgttccgggccgcgccggcagcgccgccccctctccgaccccgcccc-ggccccgccccctctccgcggctcaggtccaagccccgcccccTCGGACTCGCAGCCCTATGTAGTCACCGGAATCGAGCGTGCGCAAAGGGTGTGGGCGCAGTGTCTCCTGGAAGTCGTAGTTAAG-AGTTATAGTCGCTTTGGTCTTGGCTACCTGTGATCCAGGAGTTA----GATTTACCAGA----GGACT----GTAAATTATTGAGAATGACCGGTAGACTGGGTTGTTGGGGGTTTTTT s rn2.chr12 36567706 724 + 46874691 TTGAGCAGGCCCTTACGGAAGTCCTTGCCGAAGCCGCAGCCCGCCGTCACCAGCCCGTAGTcgccgctg---------ccgccgcctccgccgccgccCGCCCTGGGGTCGGTCTGCGACAGGCCGCCGAGCACAGCGCGGGCCACCAGCCGCCCGTACGACAAGACCGAGAACATcgccgccgccgcccccccgaggaggcgcggggcccAGGGCGCAGGAGGACGCCGAGGCCCGGAGCCGGCTCTCTCCTCAGCCGCAGCAG---CGCCGCCCGGGCGTT-CCTCAGGGCGGCGCGCACTGGCCACTGCCGCCCCTGCCCGCCGCACGGGGCCTCGCACACGCTCTACCGCACGCACTGGAGCCAGAGCGAGGTCAGAGCCGGCGGCTCCTCCGCCTCAACCAAACTGGGGTCCCGGCTGCAGCCGCAGCCGCCGCCGCCATCTTCCGCTCCACTAGCGTGTTCCGGGCCGCGCCGGCAGCGCCGCCCCCTCTTCAGCACCGCCCC-GGCCCCG-CCCCTATTCGCGGCTCAAGTCCAAGCCCCGCCCCTTCGGACTCGCAGCCCTATGTAGTCACTGGAATCGAGCGTGCGCAAAGGGTGTGGGCGCAGTTTCTCTTGGAAGTCGTAGTTCAGCAGTTGTAGTCGCTTTGGACTTGGCTACCTGTGATCCAGGAGTTA----GATTTCCCAGA----GGACT----GTAAATTATTGAAAATGACGGCTAGACTGGGTTTTTTGGGG------ a score=33854.000000 s hg15.chr12_random 22015 303 + 590431 TTGCTAACTGGCCTctagccatgctcacagctgtctcaagacctttgcccttgctttcgcttctaccctttggaatgTAATTCGTTTACCTGAGGGT----------CCTGTGTTTTCTGTTGCTGTATCCCCAGAACACGTGAGCACCCAGTAAATATGtgaatgaatgaaagaatgaatgaatATttcactagattctaagtttcccaaggacaaggatcatttgctgctcaattattagaatctaaagcaatgcctggcacacagtaggagagtgtgtaaatg-----tctgtggaataaaagaaGGAATAATGg s mm3.chr5 30102793 271 - 149719773 TTGCTGACTGGCCTCCTGCCAAGCACACAGCTGCCCCAAAACCTTT-CCTTTATTCTTTCTTCTACCAGTGAGGATGTAATTC-CATATCTAAGGGGATCTTAGATATCTGTGTTCTCTGT---TGTGCTCCCAGACCATGGG------------------------------------------ATTTCACTACAGACCGGGTTACTCAGGGGTGGAGGCAAATAGGCATCATATCATCAGGGTTTAATCTAATATCTGGCACATGGGAGAGAAGTTTGTAAATGTCTGATCTGTTTGGTAAAAGAAAGAACAGTGG s rn2.chr12 36569532 263 + 46874691 TTGCTGACTGGCCTCCTGCCAAGCACACGGCTGACCCAATACCTTTGTCTGTATTCTTCCTTCTACCAGTTAGGATGGAATTC-CATATCTGAGAGT----------CCTGTGTTTTCTGT---TGTGTTCTCAGACCATGGGG-----------------------------------------ATTTCACGGTAGTCCGGGTTCCCCAAGGGTGGGGGTAAACTGGTATCATATTGTCAGGGTTTAATCTAAAGTCTGGCACACAGGCGGAGAGTTTGTAAATGTCTGATCTGTTTGGTAAGAGAAAGAACGATGG a score=7410.000000 s hg15.chr12_random 22606 144 + 590431 GGAAGGAGTAATGGAATAAGAACACAAATGATAAAAGAAAGTCATGTTTGTTGAATACAGGAATGATTGAGTGAATGGGGTTCACAAACAACAGAAAATGAGCTTTGGGGCAAGTAATTCAATTTAGAGTAATTTTTAGTTTGA s mm3.chr5 30103064 108 - 149719773 GCT---------------AGACCATACATACTATCAGAATGGAA--------------GGAAATGTTTGGAAAGGTGGAATTCACAAACAATAG-AATTGGCCTTT------AGTAATCCAATGTGAAATAATTTGTAGTTTAA s rn2.chr12 36569795 91 + 46874691 ACT--------------------------------GGGGTGGGA--------------GGAAATGTTTGAAAAGGTGGAATTCACAAGCAATAG-AATTGGCCTAC------AGGGATCCAGTGTGAAATAATTTTTAGTTTAA a score=9122.000000 s hg15.chr12_random 22750 118 + 590431 TTGAAACATAT-------------------ATTTCTCAGAAACAGCAGTCTTTTTCTAG-TTCACTTTTAACAAGACCATTGTTACTTTGGGGATTCCCACCTCGTTTTTAAATGGTCCTTTTTT-------------------ATGCTTTCTTAAT s mm3.chr5 30103450 133 - 149719773 TTGTAACATAAAAAAAAAAA----------CTCATCCAGGAATGTTTGCCTTTTTCTAGATCCACTCTGAACAGCATTCCAGTCACTGCAG------TCA--------TTTAATGGTCCTTTTTTAAGATGCAGTGTTGTTGGTTTTTTTTTTTAAT s rn2.chr12 36570135 141 + 46874691 CTGTAACATAAGAAAAAAAAAACAAAAAACCTCATCCAGGAGTATTTGCTTTTTTCTAGATTCCCTTCAAACAGGATTCCAGCTACTCTGGAGATTCCCA--------TTTAATGTTCCtttttt--------tttttttttttttttttttttaat a score=24338.000000 s hg15.chr12_random 22868 260 + 590431 ATATTTAAAATGCTGCCAACTATCAACTCAACACATATTATTCCGTTATCCTAATTACTGTCATCATTAAACACTTTTGCAGTTCA---CAGTGTGCCAAGTACTGTCTATATATATGTTTCTGTCTTTAAGAGCTTT-CATCAAAATTGGACGGAAGAAATGACTTCACGTAGTGG----CATTTTGTCAAATATAC----AGAACCCAGAAAATGTTCATTTACTGGATAAATGGTATAGTAATGACAATAATGCATTCACACCTTCCTT s mm3.chr5 30103583 225 - 149719773 ATACCTAAAGTCCTGCCAACTA-------AACACCCATTACTATGTCG-CCTAATTACTCTTGTTCTTAAACACTTCTGCAGTTCACTTCTGCATGCCAAGCCCAAGCT---------CTTCTGTAACTCAAAGGTTCGCATCAGAACTAAGCCTGATAAATCACTTCCTATGATGA-------GTGGCTGGATATAC----AAAAC-----AGAAGTTCACTTTGGAGATAA--------------AAAGGGAAGCATTCACATCTTGCTT s rn2.chr12 36570429 231 + 46874691 ACACCTCAAGTCCTGCCAACCA-------AACACACATGACTATGTCA-CCTAATTACTCTCGCCCTTAAACACTTGTGCAGTTCA---CAATGTGCCTAGACCAAG-----------CTTCTGTAACTCAGAGGTTTCCATCAGAATTGAGCCTGATAAATCCCTTCCTATGACGAATGGCATGTGGCCGGATATACAAATAAAAC-----AGAAGCTCACTTTTGGGATAA--------------AAAAGAAAGCATTCACGCCTTTCTT a score=163571.000000 s hg15.chr12_random 23128 1279 + 590431 -----------------------------------TTTTTTAATGGCACAAGAATTGGAGAGTGCCCAGAAGAGGGGGTAGTGCCTCTC-GGAATCCTCT----------ACTTGGCATTTATATTGCTGCCAGCTGTGCTAAAGGTAGCTCTTTCAAGTACACAT--ACCACTACCAGATCCCAGTCAGTCTGGCAGGTAATTCTACCCCAAGGACAAACTTTTT------AAAATAGCATGTCAACCCTATTTCTTGCCTCGTCAAACTCCTTCAGACTGCTCCTACTTTTCCTTTTCAGGGCATAT---ATTACCTAATTTCCATGTCAGTCACAAGAACTGGTTTGATGGGATGAGTAGGAACCTAAAATGTGACTCTAAAGCCAG----------TAACTTCTG-CTCCGAT-GGGGCTGCTGTTTTCATGATTAAGTGATACCAGTGCCTTGAGTTTCCGGCAAATGAATTTCCTGCAAGTGAGTTTCCTGCAAATGAGTTGCCCACAGAAGCACGTGGCGAACAGAATCCTTCTCAAAGCTCCTT----------------TGCAAGTTTTAAAGGAACAGGAGATAGGGCCT--------------------CGGGTTCTCTTGAATCATTTATTCCAGAGCCAGCTCTGAAGTTTCATCACCATGGGGGAAGCCAGGAGAGGGTACTTTACAAAACACCTCCCTTCCCGTTCCTTCTCCCAGGAACACAATTCACGTTTGACATTTTGTTGGACTTAAAAAGGCCTGGATTTTCTTCCTTAACAGA----GTTACATTCCTAGCACTTCAGGGATTCCTGAGAGGTCAGTTGCCACTCTTAAAGGTGAACAAGTGTGGTGAAAATACCATCTGGGCTCCCAGGGCACCTCTATGACATTAGGAAAGAGCTTTGCACTAAAGTC-----AGCCTCCGCTCCTAAAAAAACCAAACAAACAACAACAACAAAAAGAAGG--CATGACATTTCCTAGTGAGATTTTCTGCCAGACTGGTAGGTTGATCTCTT-TGGGTTCCTTTTTGCTAACCTATTCACAATGAGCACTA---ATTAGCTTACAGcaaggtgtctcaagcttgacactattgacattttgggcaggatgattctttgctgttagggctgtcctgtgcatgcgttggagggggcttagcagcatccctggcctctacccactagaagccagaagcatgccacctctgtgccccca---ggacaacc-aaaactgtctccagatattgccaaatg-tcccctggggggcaaaattgctccctgatttagagccactgTATTACGGCAATGCCATGCAAATgagcaaatatttgttgagcacttattatgttcaagtctctaggctaagGATAAAAAAAA s mm3.chr5 30103808 1281 - 149719773 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTACAATACAATAACTGGCACATGTCCAAAAGAGGGGGCAGTGTCTCTCTGGAATCCTCTATCCTCTGTTGCTTGGCATTTCCGTCTCTGCCAACTGCGCTAAAGGTTGCTCTTTAAACCACACACACGCCACTAGCCAGTCCCAGCCAGCCTGTCAGGTAATCCTACCCCAAGGACAAGTTTTTTTTCTTTAAGACGGTATGCCAACCC-GTTCCTTGCCTTGTCCGGCTCCCGCAGACCAATCAAACTTAT--TTTTCAAGGCAGGTATAATTACCCAATTTCCATGTCGGTCATGAAAACCGGTTGGATTGGGCCAGCGGGAAGACAG---GTGGCTCGCTTGCCTGGCCTTTGCCATAACCTGTGTCCCCAGTTAAGTCTGCGGTGGCGACT-TTGGGTGTCAC--GTGCCTTGAGTTTCCAG------------CCGC---CGAGATTTCTGCCGACGGGTTGCTTTCTGAGGCATGTGGCAAACCG-TCCTTTCTCAAAGTTCCTGTGTTCTTTTCT-----TGCATGTGCAGGGGAGGCGGGGG-----------------------------TAGGTTCCCTGGAATTATTGGTTCTAACGCCAGCTCTGAAGTTTCATCA------GAAAAGCCAGGGGAAAGGACTTTGCAAAACACCTCGCGC----TGCTCTCCCCTAGGGGGACAATTCATATCTGACATTTCACTGGACTTGAGAAACCCTGAGTTTTCCTCCTTAGTGGA----GTTACATTCCTAGCACTTCAAGGATTCCTGGGAGGTCAGTTGCTGCTCTCAGAGGCCAAGAA--GTGGTGAAAATACCATCCAGGCTCTTGGAGCACCTCTGTGGCATCAGGAAAGAGCTTTGCCCAGAGATTGCCA-AGCCTCCGTTACTAATAGAA----------------GAGAAAGAAAAGA--CACATATTTTCTAAAGGGAACTTCCTGCCAGGCCAGGCCAAAGATCTCCTCTGATTTCTATTTTGCTAGCCTAAGGAAAAGGAGCACTAGTTGTTAATTCGTGGTaggatttcccaacactgatactattgacattt-ggacagggtgtgtctttgac----agcctgttctcagca----ccataggtgacttggcaacatccctggcctctacccgatagatgctggtagcaccctgc-----cactcccagagggataaat-ggaaatgtct-gagctgtttccagata-ccctcgggagggtacaatcgct-cttggattagaactaGCAAGTTATGGCAACACCAGGCAAGCGAACAAGTAATTGTCAAGCATTCATTAGattaaa-----------aaaaaaaaaaaaaa s rn2.chr12 36570819 1300 + 46874691 tatatgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTACAATACAACAATTGGCACATGGCCAAAAGAGGGGGCAGCGCCTCTCTGGAATCTTCT----------GCTTGGCATTTCAGTCTCTGCCAACTGAGCTAAAGGTTGCTCTTTAAACCACACGC--GCCACCAGCCAGTCCCAACCAGACTGTCAGGTAATCCTACCCCAAGGACAAGCTTTTTTT----AAGATGGTATGCCAATCC-GTTCCTTGCCTTGTCCGACTCCCGCAGACCAATCAAACTGAT--TTT-CAAGGCATGTATAATTACCCAATTCCCGTGCCAGTCATGAGAACCAGTTGGATCGGGCCAGTGGGAACGCAG---GTGGTTCACTTGCCTGGCATTTGCCACGACCCCTGACCCCAGC-AAGTCTGCTGCGGTGACT-TTGGGTGTCAC--GTGCCTTGAGCTTCCAG------------CCGC---TGAGATTTCTGCCGACTGGTTGCTCTCTGGGGCATGTGGCAAACAG-TCCTTTCTCAAGGCTCCTGCGTGCTCCCCCGCCCCTGCATTTGTGTGTGGGGTGGGGGACACAGGTTGAGGGGCGTGTGTGTGAGAAGAGGTTCCCTGGAATCATTGGTTCCAGAGCCAACTCTGAAGTTTCATCA------GAGAAGCTAGGAGAAAGGACTTTGCAAAACACCTCTCGC----TGCCCTCCTCTAGGGGGACAACTCAGATTTGACATTTTGCTGGACTGGAGAAACCTTGAGTTTTCCTCCTTAGGCGAGTTCGTTACATTCCTAGCACTTCAAGGATTCCTGGGAGGTCAGTTGCTGCTCTCAGAGGCCAAGAC--GTGGTGGAAATACCATCCAGGCTCTTGGAGCACCTCTGTGGCATTAGGAAAGAGCTTTGCACAGAGATTGCCACGGCCTCAGCTACTAAAGGAA----------------GAGAGAGAAAAGAGGCATGTATTTTCTAAGGATGACTTCC-----AGTCAGGCCAACGATCTCTTCTGACTTCTTTTTTGCTAGCTTAAGGAAAAGGGACACTGGCTGTTCATTAGTGGTaggctttctcaacactgatactattgacatttgggacagggtatgcccttgaccgagaggctatcctcccca----ccagaggggacttggtagcatccctgccttctacccactagatgctggtagcaccctgctgct-cgctcccaaagggataagtagaaaatgtct-gagctgttttcagatatccccccggagggtacaatcact-gctggtttagcactaGCAAGTTATGGCTACACAAGGCAAGTGAACAGGCAATTGTCAAGCACTCGTTCGATT---------------------TAAAAAC a score=4855.000000 s hg15.chr12_random 27560 243 + 590431 TTTAAAGGTGTACTACTGAATAGACATAAAACAGCACACATCTTCCAAA-ATCTGTAAAACTAAATACAATTTTGAGAAGATGACCAGACAACCAACCAATCTACTCCATGATCTCAGCAACATGCCTCAAGCATTTTGCTGCATCTTT----TAAGGTTGAGGAGAACAAAGAACTCTGAAGAGACAAAATACAAGTTTATCACAGAATAAACAACCTTAAATCCTCTATTCAGAATTCAAATATTC s mm3.chr5 119591258 235 + 149719773 TTTACGGGCTTGCTAACGAAAGGATATAAAATAGCCTGTAGGTTCCTAATGTCTGTAAAACTAAATATGACC--GAGATGAGTACCTGGCGTCCAGAGAGCCCAGTCCCTG-TGCCAGAGGCG-GCTGCAGTCAGTCCGCTACACACATGCACTAGGGTTCAAAAGAACAGAAAATTCCACAGAGACAAAATTCAG------TACAGAA---GTGACTTCACATCCTGAGTGCAGAATCTGAGCGCTC a score=849.000000 s hg15.chr12_random 28957 56 + 590431 GTTTTAATTTTCATGATCTTTGATTTGTAG--GCATGAACATTAAGTTTTTTAGTCTA s mm3.chr5 119591493 58 + 149719773 GCCTGCATTCTCATGATCTTTGACAGAGAGTAGCATCCACTCTCCGTGCTCTCGTGGA a score=41140.000000 s hg15.chr12_random 29013 390 + 590431 TAATATCAACTCTGTCTCAAGGA-ACCCAGTTTTCCTGGTAACCTTGA-----AAATTAACTTACAAGGAAAGA-TATTTGTGATGGGATGAAAAGAATCAATCAAGTT-CAGGCTCACCTCATATTTAGCAGCAGTAGGAATATCCAGTTTGGTTGTGAAGGAAACATATGATTCAGCATTCAATGTAAAACCATCAGATGTTTTCATCAATGTATCAAAATTGTTTTCATCAGGTACTTCTGGATTAATAAAGGATAATGCAGGTTTATCTGTTTTTTAAAAAAAACAGTATTTTAAATCGGTATAAAATATATGTATAATATGTATGACCTATATAAAGGTTTTGGAAA--GTTTTTAATAGC------------------------------------ATCAAGGCTGA----------------------------------------------------------TGTAAAAAACAA-ATAGT---GTCTTg s mm3.chr5 119591551 437 + 149719773 ------------TGTCCCAAGGGCAGGCAGTTTGCCTTTATATGTTGATACTGAAATTCGCTTCTAAGGATAGAGTATTTCAGGATGTATGAACAGCTGCCATCGGGTTGTTGGCTCACCTCGTATTTAGTGGGCTGTGGGCCATCTGATGCGGCTGTGGAAGGAACAGCGGATTCGGCACTCAGTGTAAAGCCACCTGATGTCTGCATCAGTCTGTCAAAATTGTTTTCATCAGGCACTTCTGGATTAGCAAAAGACAGTGCAGGCTTGTCTGT--------AGACAAAGCATTGGAAATCAGCAGGA-----ATGTATAGAGTATGTGAC----ATCACACCTTTGGAAACCACTGTTAATAGCAATAAAACCCCTAGAAGAAAACAGTCTTTCCGGGCTGTCTAGACGGC-------------------------AGGCCTCA---CTTCAGTTTGATCCCTAGGACTTACACAGAAGAA-AGAGC---CTCTAA s rn2.chr12 10269136 468 - 46874691 ------------TGTCCAAGGGGCAGGCAGTTTGGCGTTATACGTCGATACTGAAATTAGCTTATAAGGAAAGAGTATTTCAGAATGTATGAACAATGGCCATCAGGTTGTTGGGTTACCTCATATTTAGTGGGCTGTGGGTCATCTGAGGTGGCTGTGGAAGGAACTCCTGACTCGGCACTCAGTGTAAAGCCACCTGATGCTCCCATCAGTCTATCAAAATTGTTTTCATCTGGCACTTCCGGATTGGCAAAAGACAGCGCCGGCTTGTCTGT--------AGACAAAGCATTGGAAATCAGCAGCA-----ATATATGGAGTATGTGAC----ATCTGAACTTTGGAAACCACAGTTAGCAGC-ATAAGACTCCTGTAAGAAAACCGTCTTTcagggctgtctaggcggctcggcaggtgaaggtgcttgccagtcggcctcacagcttcagtttgatcctcagaacttacatagaggaagagaactgactttat a score=73108.000000 s hg15.chr12_random 29701 801 + 590431 --------------------------------------------------------------------GTGTATTTTTCCATATTCACTTCTCCCAGGATTTTTTAAAGCTTATTAAACAAACAGGACCTCCAG-------------------A-CTCAGCCT------------------------------------------------------------------------------------GCTTCTTCTAATAATGGGGAAGTAATAGTTTGTAGCACTTACAAGTAAACAGCACAACAGAAGCCAATAATAATCC--GTCTATTTCTCTAGCCCCTGGACTGATGAGTTTGCTGTATCAACCTGTAAGGAGAAGCTCTCTCCGGATGGCTATGGGAATGAAAGAATCCGACTTCTACTCTCACACAGCCACCGTGAAAGTCCTGGAGTAAAATGTGCTGTGTACAGAAGAGAGAGAAGGAAGCAGGCTGGCATGTTCACTGGGCTGGTGTTACGACAGAGAACCTGACAGTCACTGGCCAGTTATCACTTCAGATTACAAATCACACAGAGCATC-TGCCT--GTTTTCAATCACAAGAGAACAAAACCAAAATCTATAAAGATATTCTGAAAATATGACAGAATTTGACAAATAAAAGCATAAACGTGTCTCTGATCTTTGATATCCTGATAACATTTTACATGTACATGTACTTTGGATCTAGACATATATTTGAGCTAAATGCTCAGA-TAAAAATAAAGATCCTGTTTTCATGCAAATATTCTTAGTAAAAATAAAAGA-AAAAAGGAAATAG-AAACCACAGGTAATGTTCAAAGCTGAGCCTGATTTTCAACCATTAAACCAGGAGGAAATAAAGTTAAAAAAACACATGTATATATA----------------------------GA------------------------------------------------------------AACCTAGATTCCTATGTATGTCTGCATATTATAAACACTTTTAAGAT-AAGTATACGGTTTCGAAAGA s mm3.chr5 119591988 853 + 149719773 AACAGTCACCCTCTAGTCTACACAAACACACATG--------------CACACACATTTAATTTTAAAATGTTTTCTTGTACATTTGCCTCTCCCAGGATTTCTCGAGGCTTGTTAAATGAACAGGATCCCTAATCATCATGAGTTTGAGACCACCCTGGTCTGTGTGG-------------------------------------------------TCAACAGAGGAGCAGGATCATTCGACTGGGCTGCATCTAACTGTGTGGCAGTACTTGCTCTGAAGGCCTACAGGGAGACGACACAGCAGAAGCCAAGGGTCAGGCTGCTCTGTCTGTCTAGCACATGGATGG--AAGTCTGCTTCTT-CTCCTTCTAGGGGACACTCTCCGTGGGTGGCTGTCAGAA------AATACCACTCAT-CTCTTG-GCACCCACT-------TCC----------TGTGCTGTGAGTGACAGGAAGAAGAGGAGGCAGGCT-CCATGTCCACTTGGCTGCAGTTATG-------GCTAGACAGTCACT-GTCACTTGTCACTTTGGAT-----------AAGCACATTCCCCCCAGGTCTTCAGTCATGAGGGGACAAATGCCAAACATGGAAAGACATGGGAATGAGATGATGAGGTTTAGCTGACAGAGCTATGAGTGGGCT---------TGTTATCCCGAGAACAGCATGCACTCAGGAGCATGGGGGACCAACACACTCGCCTGAGCTGACTGCTCGGGTTAAAAATAAAGATCCTGTATTCATGCAAATCTTCTAAGTAAAAATAAAAAAGAAAAAGGAAATGGAAAACCACAGGTAACATTTAAAAATGAGACTCATTTTTAGCCATTACTCTACTAGGAAATAAACGTGCATGCACAAACATGCACACA----------------------------AAACACACA--------------------------------------------------CACAACTTGGATCTC----TCTGACTACAAGG------CATCTTTG-----AAGTGTAAGAT----AAAGG s rn2.chr12 10269604 973 - 46874691 acaagtcaccctctaatctacacaatcacacatgtgcgtgcacacacacaaacacaTTAAATTTTAAGATATTTTCTTGTACATTTGCCTCTCCCAGGATTTCTTGAGACTTGTTAAATGATCAGAATCCCTAatcatcatgaatttgagaaca-cctggtctctatggtgagttctaggccagcaaaggatccatgagaagaccctgtcatgaaaattcaatagacaaGCAAGATCACTCGACTGGGCTGCATCTAA-----------------GTCTGAAGGCCTACAGGGAAACTACACAGCAGAAG-CAAGGGTCAGGCTGGTCACTCTGTCCAGCACATGGACAA--GAGTCTGCTTCTTCCCCCTTCTAGAGCACACTCTCTGAGGGTGCCTGTCAGAA------GATAGGACTAAT-CTCTTG-GCAGCCACT-------TCC----------TGTGCTGTGTCTGACTGG-AGAGGAAGAGGCAGGCT-CCATGCCCACTGGGCT------------------TAGACAGTCACT-GTCACTTGTCACTTTGGAT-----------AAGTACATT-CCCCTGGGTCTTTAGTCATGAGGGAACAAATCCCAAACATGGAAAGACATGGGAAGGAGATGATAACATTTAGCTGACAGGGCCATGAGTGGGCC---------TGGTATCCTGAGAGTAGCACACATTCAGGAGTACTGTGGACCAACACATCCGCCTGACCTGACTGCTCGGGTTAAAAATAAAGATCCTGTATTCATGCAAATATCCTTAGTAAAAATAAAAAAGAAAAAGGAAATGG-AAACCACAGGTAACATTTAAAGATGAGACTAATTTTTAACCATTGCTCTAcgaggaaataaacatccatgcacacacatgcacacaggcacgtgcatgcacgcacatgaacactgaacacacacacacacacacacacacacacacacacacacacacacacacaccggcaCGCACAACTTGGATCCC----TCTGACTCCATGGCATAAACATCTTTGAAGTCAAGTGTAAGAT----AAAGA a score=11004.000000 s hg15.chr12_random 30502 145 + 590431 CAACTACACAATCATAATTACTTTTAAAGAAAATGTGCATGCCCACAGGTCTATAAAGTTACTTCCTATTACCTGTGAAATGGTCTCTAAAGATATACACTATACATATAG-CAAAACAGAA--TAATTGCTTTAAATCTAACTGAGg s mm3.chr5 119592841 130 + 149719773 CAGCTACAGAGCAA-----ATTCTTGAAGACAGTGTGTGTGCCCA-GGATCTATAAAG----------TTGCCTGTAAATCAGCCCT--GGGGTTTGAATTATTCACACAGTCAACACAGAAGCTGGGTGCTTTAAATGGAGCTGAGT s rn2.chr12 10270723 125 - 46874691 CAGTTACAGAGCAA-----ATACTTAAAGTCAGTGTGTG--CCCA-GGATCTATAAAG----------CCACCTGTAAACCCGCCTC--AGGGCTTGAATTATTCACA--GCCAGAACAGGAGATGGGTGCTTGAAATGAA-CTGAGT a score=39417.000000 s hg15.chr12_random 31492 282 + 590431 ATAACTTTGAGAAAAATTTTCCAGAGCTTCACAAAATATATCAATGTCAAATACTTACAGTTTGTAATATGAATGCAGAAAATAGATGGATTAATCTGGTCAACAAGTTCAAATACTCTTTGAGGTGGGTTTGCTGTAAAATTCAATGAATAGATGACTGCTTTTTGACTACAAAACTGGCTGTCGCCCCTGaaaattaaaaaaataataataCAAAGTTACAAGACATAAGCACACAATCTTAGCAAAATTATTTTAAAACTGTCAGATGCTTGTACTGTA s mm3.chr5 119592992 246 + 149719773 GTAACTT-----------------------TTAAAATCT----AATCCAAATACTTACAGTTTGAAATATGGATGCAGAAGACGGAAGGATTGATCTGATCAATGAGTTTAAAGTCACGGTGAGGTGGGTCTGCTGTCAAATTCATTGAGTAGAAGGCTGCCTTCTGACTACAAAACTGCCTGTCACCCCTGAAAGTCAAAGAA--AGCAACAGCAAGTT-------TTCAGTCCACAATCTAAGCCAGATCACCCTACATTTCTCAGATGCCTTCACTACA s rn2.chr12 10270869 263 - 46874691 GTAACTTAAAAGAAAAT------GGATCTTCCAAAATCTGTCAAATCCAAATACTTACAGTTTGAAATATGAATACAGAAGATGGAAGGGTTGATCTGGTCAATGAGTTTAAAGTCGCGGTGAGGTGGGTCTGCTGTCAAATTCATTGAGTAGAAGGCTGCCTTCTGACTACAAAACTGCCGATCACCCCTGAAAGTTAAAGAA-----AACAGCAAATT-------TTCAGTCCGAAATCTAAGCCAGATCATCCTA-ATCTCCCAGACGCCTCCACTACA a score=1846.000000 s hg15.chr12_random 33036 108 + 590431 ttttatgattttaatgtatactgtatatgttatttaaataattaatGCTAGCGAAAAATAATTCTCTCAACCCTGTGTCCAGCCACCTAGTTCCTGTCTGCAGAGGCA s mm3.chr5 30129672 95 - 149719773 TTATAAGATTTTAATGAGTATCACA---ACTACCATGAAAATGAACA----------GTGATTTGTTCATGTCTGTGCTCAGCCATCTGATTCCTGTCcacagacaca s rn2.chr12 36606467 67 + 46874691 -TCTGAGATTTTAATGAGTATCACA-----TAGTGAGACAGGTAACA-------------ATATGGTGATG----------------------CTGGCACcacacaca a score=30883.000000 s hg15.chr12_random 33253 299 + 590431 cacaactagatgtgagcttcttgagggcaaggaccacatctgttttttgctcatcagtgtgtctctgatgcctgcagtgctgcttggcacattg-tgggtgcccagtaagtgttgaatgaatACTTTAATTACACCATAACGACTGTTGGTTGTTGTGTTTGCAGTATGGGGTTCCTCTGCAGA------------CTTCAGATTCGTTTCTGAGATTTCCTTCGTCCCTGACATCATCTCTGTGCACTGATAATAACCCTGCAGGTAAGAAAGTGGTCATTCTTCTTTCCTTAGACATTTGCTGTTATTAt s mm3.chr5 30130862 263 - 149719773 CATAGCTATATATGGGCACTGTGT-GGCAGGGAC-----------TGTGCTTAGTACTGTGTCCCCAATTCCC-CCGCTCTGT---GAGCATTGCCATGTGTCTCGCCCATGCTGAAGGAGCACCTTATCTA----------ACCTGTGGGTGCTTTGTTTGCAGTATGGAGCCCCTCTGCAGACTGCAGGAGCATCTTCAGGGTCATTTCTGAAACTGCCCTCGCCTCTCACGTCATCTCTGTGTGCAGATCAGAACCCCGCAGGTAAGAGGGAG-----------------------CTGCTGCTCTTCC s rn2.chr12 36607457 262 + 46874691 CTCAGCTGTGT--GAGCACTGTGTCAGTAGGGAC-----------TGTGTTCAGCACTGCGTCCCTAAATCCC-CAGCCCTGT---GGGCACTGCCATGTGTCCAGCGCATGCTGTAGGAGCACCTTATCTA----------ACCTGTGGGTGCTGTGTTTGCAGTATGGAGCCCTTCTGCAGACCGCAGGTGAATCTTCAGGGTCATTTCTGAAACTGCCTTCACCTCTCACTTCATCTCTGTGTGCAGATGAGAACCCTGCAGGTAAGAGGGTG-----------------------CGGCTGTGCTTCC a score=8468.000000 s hg15.chr12_random 33631 171 + 590431 TACTTTACATTTGTAGTAGTCATCATTAAACAGGCCTCGTAACtaaaaacagaatcttcgggttaaaagaggcctcaaaggtcacgtagttcaatttctcacccagggccagtcttttctaccacatgcagtcactgcttgagcacttgtagtgatggggaactg--------actacc s mm3.chr5 30131125 144 - 149719773 TGTTGGCCACTTAAGCTTGCCA--GTTAGGCAGG-CTCATACCCTAA---ACACTCTCCAGGT---AGAACGCCTCAAAGGTCG---------------CCACCTGAGGAGGTCCTTTCTCCCCAGGTCGGCGACTGCCTGCACAC-TGTAGTGA--GCACACTG--------GCTACC s rn2.chr12 36607719 148 + 46874691 TGATGGCCACTAAAGCTTGCCA--GTTACACAGG-CTCATTGCCT-----GCAGACTCCAGGT---AGAAAGCCTGAAAGGTCA---------------CCCCCTGAGGAGGTCCTTTCTACCT-GGTCAGTGACCGCCTGAACCC-CGTAGTGA--GCGC-CTGCAGTAGAATCTACC a score=33964.000000 s hg15.chr12_random 34646 639 + 590431 aaccaaactgagataccattttcccctgtcagattggcaaaactcaaaaaaactgaagctgtggggaaacaggcagtccacctacatagctggt--gagactgtaaattggtacaaccttggtgaagggcaatttagcaatttgtatccagattagaaatgaatgtgctcttcaacccagctgttctacttccaggagttgatcctacagaaatgc-tggccaatatgcaaaata-----atagattgcagcattgttggtggtagcaaagatggagacaa--cttaagtgttcattaatagggaactggtataataattatgccacatct-----ataatactaattatccc--caagaaaggaggagctgcttcatgtaaagacaggccaatctccaagatatattgttcagtaaacaaaatgaggggcagaatagtgtatatattgtacatttgtttccaaaaggggaaa----------gaaataataataaaaatatatgtatGTTTTTTACACACATATTTGTTTTTATTTCCATAGAATATTTCTAGAAAGAGACACAAGAAGCC-TCATGCCAGTTGCCTCTGGAGAAGGGGACTGGTGGTAGCTGGGGGGCAGGACAAGAATTGGAGGGGGATTTACT-------------------CATTATCTTT-----------------------------------------------------------TTGTGCTTTT s mm3.chr5 30133001 547 - 149719773 aGCCAAGCTCAGAAGCCATTTTTCCTTTTCAAATTGACAAAACTCAAAAAGTTGGAAGCTGTGGAGAGACATACTCTCCTGC--AGTAGTTGGT--GGAAC----AGTTGGTCACACCCT-GCCAAAGGCAGTGTAACAT-ATGGATCGAAATTA------------------------------------CCAGA----GCTCCTGAAGGAAGGCTTGGCCCACATGCAGGAGCCCCATGCAGACTGTGACA------GCAGCAGCCAAGGCTGAGACAAAACTGCTGTGGCCATTAGCCGGGAACTGG-GGAGTAATTATGCTGCATCCGGGAGAGAACGCTAATTATCCCTTCAGGATTGCTGGAAGGGCTTCA-------GGATGC------------TGCAGTGCTCACGGGGAAACGTGCACAACAGGGTAGTGGGTGCGCACCGCATCCTCGTCCACGGGTGAAAA-----TGTCTCAAAAAACCAAAAAAAAA--------CCTTTTCCGCATGTGTTTT-TTTTATTTGCATAG--CATTTCT---CAAGGCTTCGGCAGGTGGTCACG-CTTCGCCCCCTGAGGCAGCGCTCTGGG------CGGGGTGCGGAGC------TGGAAGGAGA--CACT----------------------------------------------------------------------------------------TGCTGCTTTT s rn2.chr12 36609698 616 + 46874691 aGCCAAGCTCAGACCCCATTTCCACTGTTCAGATGGATTAAACTGAAAAAGGTGGAAGCTGTGGAGAGACAGACTCTCCTGC--CGCAGTCGGTCGGGGAC----CATTGGTCACGCCCT-GCCATAGGCAGCGTGATAC----GATCAACATTA------------------------------------CCAGA----GCTCCTGAAGGAAGGCTTGGCCCACACACAAGAGCCCCATGCAGATTGTGACA------GCAACAGCCAAGGCTGAGACAA--CTGCTGTGGCCATTAGCTGGGAACTGG-GGAGTAATTATGCTGCATCCGGGCGAGAGCGCTAATTATCCCTTCAGGATTGCTGGAAGG--TTCA-------GCGTGC-----------ACACATTGCTCACGGG-AAATGTGCAGAACAGTGCAGTGTGTGC-------ATTCCTGTCCAAAAGGGGAAAATGGTTGTTT----------AAAAAATA--------ACCTTTACGCATGTGTTTTGTTTCATTTGCATAG--TACTTCT---GAAAGCTTCAGCAGGCA-TCAC--CTTCCCCCTCTGAGGCACAGCCCTGGG------TGGGG-GCAGAAC------TGGGAGGAGA--CACTGTTCTGCATCTTCCAGGCATATTGTATTTAGACGATTTTGTGCATGTATTTCCTAGTTGAAACCCATTTTTAAGCCCCATTTTAAACTTGCTGCATTT a score=47327.000000 s hg15.chr12_random 35519 802 + 590431 TTTACCTAGATTA-------AAACT--TTTTAGTTGCCATTGGAAAATTGAAAAATTTCT-----TCTCTTTTGTATTTTTTTTTCCTTGGGAATGTTAATGATTTCTAGCGTTTCTGGTGAACCAGGCTGTTAAGTGCACCAGAAAAATAAATTTAGAACAGTGTGAAGAAATTGAAGCCCTCAGCATGGCTTTTTACAGCAGCCCGGAAATTCTGAGGGTAAGAATTATTTTGAAGTGGAACTTACTCATTAGGTATGTTTCTGTTCTTTCTGCGCTTTTAAAATATGACAAGTACAGAATAATTTCAGTACATGATTGACACTCGAGTTTAAATTTCTCCAGTACTTTTATATCAGTGATTATTGAAATAATCCtttaaataattttta-----tttttttataGTTAGCTCATATTTTGCTTTTGTTGATTTT-----TTTCTTTCATTCATTTTGATGGTAACCAATATCTGTCTCCTGAATAAAAACAAATCTTTACGAATAACTAAAAACTTTAGAAATCATAAAAACATCTTCATGTCTGTGACAGAAATAATCTTATTAGCCCCAAAAAGGGCTCCCTCTCAGAAACAGGCCAGAAAAGAAGAGGAAATCCACTTTCTGGTTGGCAGATGACACAGGCAGTCAGGAAAGAACAGGAAA-----TGGGAGAAGTGGGCACAATGGT------GAAGGGGCCCCTTCTCTCTGGTTACAGTGACTGAACCCTAAACTGAAGAAA---TGATGAGGCCACTGGCCCACATGACAGATGAGATGGAGGGTGGCAAGGGAAGAAGACCTTTTTCAATGATTAAAAACCATATGATa s mm3.chr5 30133757 695 - 149719773 cTTACTTTGACTTTTCTGCATGACTGTTTTCAGTTCCCATTCTTGAGCTGAACATGTTCTATATATTCCTCCCCCAC-CCCCACCCCCTGG--ATGTTACC-ATTTCCAGCGTTCCTGGTGAGCCAGGCCTTCGAATGCAGCCGAAGGGTGGACATAGAACAGTGTGAAGGAATGGAAGCCCTCAGCATGGCTCATTACAGCAGCCCTGCCATTCTGAGGGTAAGACTCATCTGGATGCAGAACTGA-------------------------CTGTCCCTTTAAGATGT---------AGAGTGATCTC--CACTTGGCCTGGCCTGTTGT-----GTTCTCTGGCCCTGTGGTATCGGTGGCTGCTC-------------AGTGATCTTTAGGAAGTTTGTGTGGAGCTCGGCTGTGTCTCGTTTCCATTCAGTTTTAAAATTTCCTTCATTTGTCTTGAGAG--------------CGGCTGAGCAAGGCCAGGTCTTC---AGTGACTGCTCACGTTGGAGATCGT----CCAGCGCCACGT---TAACAG-TCCAGTCCTACCAACACCATAAAAAGTGGGCTTC------------------------------C-----CCGTCTACCTAAAGACAGAGGCTATCAGGAATGGTCTAACAGCAAGCTGGGTG----GGGTACCCAAGTCCCAAGGAAAGGGCC-ATGTTCCTTAGAGATGGTGATGG-------AGCTGGAACAG-AGTGAGCGAGGCTCTGTCCTACATGACA---GGGAGGGAGGGCTG-AAGAGAGGAAGA--------GGTGACT--CAACCATGGGATA s rn2.chr12 36610618 672 + 46874691 ccTATTTTACCTGTTCTAT-TGACT--TTCCACTTCCCATTCTTGAGCTGAACATGTTCTGTATATCCCTCCCCAACTCCCCACGCCCTGG--ATGTTACC-ATTCCCAGCATTCCTGGTGAACCAGGCCTTCGAATGCAGCCGAAGGGTGGCCATAGAAGAGTGTGAAAGAATGGAAGCTCTCAGCATGGCTCACTACAGCAGCCCTGCCATTCTGAGGGTAAGAATCATCTGGAAACAGAACCGA-------------------------CTGACCCTGTAAGATGT---------AGAGTGGTCTC--CGCATGCCCGGCCCAGGTGC-----GTCCTCTGGCACTGTGGCCTTGGTGGCTGCCC------------GAGGGATCTCTGTGAAGTTTGTCTGTGGCTCGGCTGGGTCTTGCTTGCACTCAGCTTTAACATTGACCTCATTTGTCTGGAGAG--------------CCGCTGAGCAAGGCCAGGTCTTC---AGTGACTTCTCACA---------------------------------------------AATCAACACCATAAAAAGTGGGCTCCCAG-----GACCAGCAGGGAAG-GGAAGTGC-----ATGTTTGCCTAGAGACAGGGGCCATCAGGAAAGGTCTAGCAG-----TGGGTGGA--GGGCACCCAAGTCCCAAGGAAAGGGCC--TTTCCCTTAGAGTTGGTGAC---------AGCTGGGATGGCCGTGAGCAAGGCCCTGGCCTACTTGTC-------AGGGAGGACTG-AAGAGAAAAAGA--------GGTGACT--CAAGCATGGGACT a score=42241.000000 s hg15.chr12_random 36606 851 + 590431 CTGCCCCGCCAGAAACATACGATTATTGTCAAAGGGGTCCCCTTCCCAATTTCC---TTTTTATGAGGGGTACAGGGGTAGGGTGGTTCATGGCACCATTATTTATCTGGACCTCAGTTTTTAGGATCAAATTTAACCTTTCCCTCTCCCCTCATTTTCTCTCTCCCTCTCTTGTGTAAGTCAGCCATCTAGGCTTGTGAATTCTTCTAGTTAGCTTGAGCTCAC-AGTTGTCTTGAAGCAATTCCTTGGGCATCCAGGTACAGTTCTCTTTCAGCACAGGTCTCTCCAAACAGGTC-TATTTGTCTCCCTCCCCACGTTTCTCAG---------------------TGGGC------------CCTTCAGAAAGAAAGCTGCAGCTCTACTGGGGAGGCAAGAGCTTGTCATTGAggaggcttgggccagaggcaggaagaccagttaggagtctgtggaaatcgcctgggcaagcaatggtggccttccagcaaggacaggtgcagtgagagtgaccaggagtgCAAGAACTGTGCTTCCCACAGTGCTTATGGCCGTGAGACCATGTGGAAATATACAATAATGACCCTGGAGCATGGAGCCTTCCTGAGACTAGCTTGGTGAGCTTCTACCTGGAGGAAATGAAGATAGAAGGAAAACGCAATGTGACCTCTTTGATTAGGACATAGATTCAAACACATGCAGATGGGGAGTCTTGATCAAGGAAATTCTGTTTTCTTCTTTGTGAAGCCTTTAATAAGATGAATATACTCTTCAACTCGAGATCTGAAAAAGCAATGAAAATACTTCTTTTTGTTGTACTTAACACAATTTTTTGTGGTTTCTTTTTATCTAGGTACCTGATTCAAGAAAAAAGGTAAGAGTAT s mm3.chr5 30134452 696 - 149719773 ATGTCC-------------------------AAGG----CCCCTCCTGGTTTCTAAGTTCTTATTAGTGTT---GTGGGAGGGTGA-----GGCA----------CCTGGGCTGCCATATTCAGAGTC---CTTTA-CCCTCCTTAGTCCCTCCTGTTTTC---------------TAAGTTGGTCCTCCAGGCCTGAG-----TTCTAGTAAGTTTGAATTCTCAAATTGTCCTCAAAT----------GTGACAAGGTGTAGCTCTCTCTTAGTACAGACTTCCCCAAGCGTGCCTTTTCTGTC----------AGGACCCCTGGCCTGAGAGGGTATGGAGCCATGAGA---------------TGGGAAGGACAGCCAT----------GTGATG-------TTAGCATC----AGGCTGAGGCTCG-GCCTGGGAGACCAGAGTCAGGCCC-TGGATACCTTCTGTGCCAGGGAT-GTGACCCTGCCGTGAAGACAGGTGCAGCAAGG--GACCAA----GCAGTATCT---CTCTCCCCAGTG-TTAGGGCTGAGAGGCAGTGTGG--------GATAGTGACAGCAGAGCAGGCAAGCCTCGGGAGTGCTGC-TGCTGAG---------GGAGGATGAGACAACAGAGGGAAGT------------GTGGTGGTTACCACAGAGATGCAAGAGT------------GGTCCTGAGTGCAGAA--TCTGCTGTCATGGTGGTGGTGTCTC-GAT--GGTGAGCGTGGCCTTC-GCT-GAAGTCTGGGAAGGCTGTAGAGACTCATCTGCTTGTTGTGCCTAAC----TTAGCTGTGCTTTCTTTCTGTCTAGGTACCTAATTCAATGACACAGGTAAAAGCAT s rn2.chr12 36611290 668 + 46874691 ATGTCC-------------------------AAGG----CCCCTCCTGGTTTCCAAGTTCTTACTAGGGCT---GTGGAAGGGTGA-----GGCA---------GCCTCGGCAGCCATATTC--AGTC---GTTCACCCCTCCTCGATCCTTCGTGTTTTC---------------TAAGTTGGTCCTCCAGGCCCAAG-----TTCTAGTAAGTTTGAATTCTCAAGTTGTCCTCGAGT----------GTGACAGGGTGTAGCTCTCTCTCAGTACAGGCTTGGGAGAGCATGTCTTATCTGCCACTCTCCCGGAGGACCCCAGCCATGATAGGGTATATAGCCATGAGAGTGGGAGGCAAGCCTTTGGAAGGACAGCTGT----------GTGATG------------------------------------TGGGAGACCAGAGACAGGCCC-TGGGAGCCTTCTGTGCCAGGGAC-ACGGCCCTGCTGTGAAGACAGGCGCAGC-------------------------------------------------GAGAGGCAGTGTGG--------GATGGTGACAGCAAGGCAGGCAGGCCTT-GGAGTGCTGC-CGCTGAG---------GGAAGATGAGCTGGCAGAGGGAAGG------------TCAGTGGCTACCACATAGACGGAAGCGTGC---GGTGGCCGGGCCTGCGTGGGGAA--TCTGCCATCATGTCAGTGGCGTCTCAAAT--AATGGCTGTGGCCTTTAGCT-GAAGTCTGAAAAGGCTGTGGAAACTCATCCATTTGTTGGGCCTAAC----TTAGCTGTGGTTTATTTTTGTCTAGGTGCCTAATTCAACGACACAGGTAAAAGCAT a score=35236.000000 s hg15.chr12_random 39794 279 + 590431 TTTTGGA-AGGCTACCTTCTTAATGGAGTGGGATATTTACAAGAATTGGGGGGATTTTGGTCAAACCCATTCTAAAAAAGTATAAACATAATTTCATGCCCTGACATCCTGGtggaaatccagtgaactttgatgctcagctttgccacttagtagctctgtgatttgtggtcttgggcagagtctctcttgagtctcctttggtttatctggactaggggataaagggaatggacgatctgacccttagtgactacagcttctgacCATCATATCACAt s mm3.chr5 119621670 269 + 149719773 ATTTGAACACGCTGCTATCTTGGCATTGTGGCATATTTACAAGGGTACGGGAGATACTGGTCAGACCCTTTCTAAAAAAGCACAGATTTCATCTCCTGCTCTGGCATTCTGGCAGAAACCATGCCTACTTTGAGGTTAagctttgcaactaagtagctctgtaatttgtggtcttgggtggactttc---tgagtctgcg-gtccttatctgg---aaaagatgaaaggagtaggctGTCAGA--CTTAATG--TGGAGGCTCTGGCTAGACAGTCAGGT s rn2.chr12 10309702 257 - 46874691 GCTTTAACATGCTGCCAT------------GCATGTTTACAAGGATAGGGGAGATACTGGTCAGGCCTCTTCTAAAAAGGCACAAAGGTAATTTCACGCTCTGGCATTCCAtcagaaaccatgcctagtttgaggttaagctttgcaacttaatagctctgtgatttgtggtcttgg-tggattctc---tgagtctgcccttccttatctgg---agaagatgaaaggagtgggctGTCAGA--CTTAATG--TGGAGGCTCTGGCTAGACAGTCACAT a score=47277.000000 s hg15.chr12_random 40401 553 + 590431 CATATTTTACTTTTG--CTTTGAATAGATGGCACCCTTTGTTCTGCACCTCAAATGACAGGTGTCACGGGCACCTTCAGTAGATT---CCTGTTTTGTATGTAGCACTAAACCAGTGGTTTTTAGCTTTCCTTGATTCACAACCCCTGAGGATCAGGACC-----CTGTGCACAGAGATAAAATTTTGCATGGGCTCTTAGGAAC---TTTGCTGACTCC-------------------ATGACTCCTCTGATACCACCTGGAGGTCCATGCATAGGAATCAGATCAAGAACCCCAGCTCTGTACCCTTGAAGGGAATGCCAGCAGA------CACAGTCAGATAC-TGGTAGCTGATGTGACCAAAAGGTGGTTGTTAGCCATGTTTGACAAAGATCAAGCATGCACATAT----------------------------------------GCAAATGGTG----GGGGATAGGGGCAGTGAAGGACAGGTTCTCCAGGACTGTCCTGTTGTGGAGGAGCTCTTCCGGACGGCAGTCTTGGAAGCCACCTGAAATAACTTCATGAGTTGGCCTCATTTGATCCTTGGCTGTCCTGAACCAGTTCATATGATGGTGACTTCTATTTAGTTGATACC s mm3.chr5 119621940 518 + 149719773 CAGGTTTTCCTGTAGTCCCTCAAACAG--------CATGGCTATGAATCGCC---------TGCCACAGGCACCTT-GGTAGAGCTCTTCGTTTTTGTATCTAGCATTGGGCACTCAGTTGTTAAGTTACCTTGGCTCACTG--GCTGA-----AGGATCCTTGGCTGTGCA-AGGGACCTCTTTGGAGAAGAGAGCACAGAGGCAGGCTGG-------------------------AGACAGTCCACCATGTGCCA-CTGAAGGCAGGTGCTTGAGTGTCTGATGGAGATacaca------------------------ca-cacacacacacacacacacacacacTGCTGCTTATGTGTCCAAGAAGAA---GCTAGTCAGATTTGACAAAGATCTTGCAGACACACAC--------------------------------------CTGCAAATGGGGGAGTGGGCATGAGAACAGTGAGGAACAGGTTCTCCAGGACTGTCCTGTTGTGGAGGTGCCCTTCTGGAAAGCCATCCTGGGAGTCACCTGAAACAACTTTCTAAGTTGGCCTCATTTGGTCTTTGGCAGCCATGAGGCAGTTCACCAGGTGGTGCCTCTGACTCTATTGACACC s rn2.chr12 10309960 555 - 46874691 ------TTCCTGTTGTCCCTTGAACAG--------C----------------------------CACAGACACCTT-TGT--------TCTCTTTTGTATCTAGCATTGAGCACTCAGATCTTAAATTACCTTGGTTTCCTG--GCTGA-----AGGATCCTTGGCTGTGGA-AGGGACCACTCTGGAGAGGAGAGCACAGAGGCAGGCTGGCAGACTCTCTAGCCTGCACTCTTGCAGGTAGCCTCCCCTGTGACA-CTGAAGGCACCTGCTTGAGTGTCC--TGGAGATCCCCAGCTCTTTG-TCTTGGAAGGAGTGCCA-CAGA-------AGAGCCACACACATGGCTGCTTAT-------AGAAGGA---GCCAGTCAGATTTGATAAAGATCTTGcacacacacacacacacacacacacacacacacacacacacacacCCCTCTGCAAATGGGGGAGTGGGCATGGGAACAGTGAGGAACAGGTTCTCCAGGACCGTCCTGTTGTGGAGGAGCTCTTCCGGAAAGCCATCCTGGGAGTCATCTGAAACAACTTTCTAAGTTGGCGTCATTTGATCCTTGGCAGCCATGAACCAGTTCACCAGATGGTGCCTTCCACTTTATTGACACC a score=3941.000000 s hg15.chr12_random 41295 50 + 590431 ATACTGCTGTCAACTCTAGAGGTTGGAGTTACAACC---TGAATTACATTAAA s mm3.chr5 119622458 50 + 149719773 ATCCTATCACAGGCTGAACTGATACGAGTTGTAAGC---TGAATCACATTACg s rn2.chr12 10310515 52 - 46874691 -ATCTATCACaggctgaactgataggagttataagctgatgaatcacgggaag a score=5572.000000 s hg15.chr12_random 41345 193 + 590431 AGGCTATGTTGAGTAATAACGTTACGTTGAACTTAAGTGCTTTTGAACCTTTTGGTTCTGTAGATAATTAATTTTCTTTGAATTGACACCATATTTATTACTGAGTATCCGTGTAA-CAGATTATTCACTGTGGTCATCTAGGACTCCTTGACTG----GAATGAAAGCTGTTTCTTTCTTTTTATATGAGAAAGAGA s mm3.chr5 119622561 101 + 149719773 ------------------------------------------------------------------------TGTCTCTGAGTTGAGACTCTCTC--TTGCTAAGTATCTCTGCAGTTTGGTCACTCACTGTGGGCTT------CTCCTCAGCTGTTAGGAATGAAAGCTA-----------------GAGTAGGAGa s rn2.chr12 10310614 98 - 46874691 ------------------------------------------------------------------------tgtctcTTAGTTGAGACTTTCTC----GCTAAGTATCTCAACAGTTTGGTCACTCACTGTGGGCTT------CTCCTCAACTG-TAGGAGTGAAAACTA-----------------GAGTACGAAA a score=4349.000000 s hg15.chr12_random 41538 32 + 590431 -------AATCTCTTTTGTTTCTTTAAT--TTAAAATTGAT s mm3.chr5 119622662 41 + 149719773 aataaattattattttaatttttttaaaaattGAAATTGAC s rn2.chr12 10310900 40 - 46874691 aataaattattattttaatttttttaaaa-ttgaagttgac a score=95398.000000 s hg15.chr12_random 41570 982 + 590431 CTGTCCTATTAGTCATGCAGTGACTAATAGTGCTTGGTGCTTCACAACATTTTGT-ATAGTCCCCACTGTATTTCGTTTCGGAAAAACTGACTATGTTGGGTGTGGTGAGACATAGGAACCACTCCTATCATTCTCTA--GAAAATTGTCAAAGGTGCTTTCTCTTTACTAGGTCCAACAGGAGTAAACCAGTACTAGCGGGAGCGTGTACACTTTTCTTGTTCCTTCTTCCCTGTG-GCTAATTCTGAGTTCTCTTATTACTCTACGTGGCATGGCTTCCTAGGTGCACAAAAATATGAGAACTGCATGTTGTAATACCTGGGCTTCCCACAGCCTTATGCTACTTAACAatagaatca-aagactgttgagaattgtaacacttagaaaccttggagtctagttttttt-cacctcactgatgagaaa-acaggcctccagagagtcagatgacttccccaaggttactctactagttattggtggaactgaggctgacacctatctcagtctctcatctgagactccctttcccagtcctgtccccgttagaccactGGTCAAGTTTTCTTGATGATATATGTGAATTAAAAACCAGTCAGTCTCCTGATACTTTTGTGCTTCGAATGCTTTTCCTGGGTGTGTGTGTGTGTGTGTTTATAAC-----TTCTTTATTCACTCTGACTCATAACTGATGTGCAACAAAAACTCCTCTGCATGCTAAACCACAGTTTAGAG-AAACCACTTATTTTAAAAATGGCAGCCTGGTCTGTGCCATATAAATTTTGACCTCTGAATATTGAGTTGTAAAGTATTTATTATGAAACTGTGGGATGTTTATTTAAGCTTAGTTAAACTTGAAACCTAAAAGTGAAATTAAAATAATTTCATATCCCAGCCTTTGGATCTGATTTTGATCGTGGTCAGGATTTTGAAGTGTTTTTGTGAGTAATGTCAGTCTT-AAAAG-------------TAGTTGTCTTGAGGTGTA----------------------AAGAT s mm3.chr5 119622869 860 + 149719773 TTGTCCTGTTAGTCA-----TGATAAAGAACACTTGATGACTCACA-----CTGTTATTGTCCCCACTGGATTTCTTTTAGGAAAAATTGGCTGTGGAGGGTGTGGTGAGTCCCA-GCACCACTCC---CATCCCGTGTGGAAAATTGGCAGGGGCTCCTTCTCTCCATTGGG-CCAGCAGGAGTAAGCCCATGC-GGCACGAGCT------------GTTTTC---CTTCCCTTTA-CTTAGCCCTGAGCTT---TGTCACTTTGCATGCTGTGCCTTCCTAGGTACACAGAGCCATGAGAGCCACCTGATG------------TCCCCAT------------CACAACAGCAGCATCAAAAGGTTGCTGAGAACTG-CAGACTTCACAACCTTGAGGCCCATTTCCTCCATGTTTTGGTGATGAGTAG-AGAGACCTTCAGATGCTTGGGTAACT---TCAAAG---CACTGCTAGTTATTGGCAGA-----------------------------------------------CAGGGCTTTCTCTGTCATA----------------CTTGAAGGGATGAAGGGAGGGAAAG--AGTCAG-----------------AGTGAGAGTGA-------GAGAG--CATATGAATGTGTTTATAAT-----CGCTTTATTCTCTCTGACTCATAACTGGAAAGCAACAAAAACTCCCCTGCATGCTAAA-CACAGCTTACAGAAAACCATTTATTTGAAAATGGAAGGCATGGTTTGTGCAGTATAAATTCTGGCCTCTAAAGACTGAGCAGTGAAGCTGCTCTTAAAAAGCCAAGGGTTGTTTGTTTAAGCTTGGCTTAACTTGGAACCTAAACATGAAAATAAAACAGTTTTCTACGCCAGCCTTTGGTTTTGAGTTTTTACTGGGCCAGGATTCTGAAGTGTTTTTGTGAGTCTTGCCAATCTTAAAAAATATTCTT------tggtggggtggcggtggc-ggtggtggtggtggtggtggtggtgg s rn2.chr12 10311137 870 - 46874691 TTGTCCTGTTAGTCA-----TGATGAAGAATCCTTGATACCTCACA-----CTGT-ATTGTCCCCATTGGATTTCTTTTAGGAAAAATTGGCTGTAGAGGGTGTGGTGAGACCGA-GCACCACTCC---CATCCCATG--GAAAATTGGCAGGGGCTCA--CTCTTGGTTGGG-CCAGCAGGAGTAAGCCCGCAT-GGCACAAGTTCTGCGGCTTCTCTTGTTC---CTTCCCTGTAGCTTAGCCCTGAGCTC---TGGTACTTTACATGCTGTGCCT----AGGTACACAGAACCCTGAG-GCCACCTGATG------------TCCCCA--------------GCCACAGCAGCACCACAAGGCTGTTGAGCACTT-AACACTTCATAGCCTTGAGGTTCATTTCTTCTGTGTTTTGATGATGAGCGGCAGAGGCCTTCAGATGCTTAGGTAACT---CCAAAG---CACTGCTAGTTCTCGGCAGA-----------------------------------------------CGGGTCTTTCTCTGTCACA----------------CTTggaggggtgaagggagaggaag--agtcag-----------------agggggaggga-------gggagggCATATGGATGTGTTTATAATGTAACCACTTTATTCTCTCTGACTCATAACTGAAAAGCAACAGAA-CTCTCCTGCATGCTGAA-CA--GCTTACAGAAAACCACTTATTTGAAAATGGCAGGCATGGGCTGTGCAGTATAAATTCTGGCCTCTAAAGACTGAGCTGTGAAGCCGCTCTT-AAAAGCCGAGGGGTGTTTGTTTAAGCTTGGTTTAGTTTGGAACCTAAACATAAAAATAAAACAGTTCTCTAC-TCAGCCTTCGGTTTTGAGTTTTTACTGGGCCAAGATTCTGAAGTGTTTCTGTGAGTCTTGCCAATCTT-AAAAATACGCTTtggtggtggtggggtggttgtggtgggtggtggtggtggtggtggtggtgg a score=10078.000000 s hg15.chr12_random 42553 272 + 590431 ATATGAACAAAATTAAGATCTAAATTATATTTAGGA-----------------------AGTGAATGGATGAGGTAGAATTTGGTGTTTTCAAACAGTCATGATCATTTTAATGTACTTATagaacctctattctgaaagtgagttgtccttttaaaaaagtagtcaccttcagagtgtgtgtgtgcacccactgacttcagtctttcaagaagtccttgttggaattttcctcagctagatttcaagccatgtcaggacacca----ctctcattatattaCCATAATTTTCTT-------------TTCt s mm3.chr5 119623958 213 + 149719773 ttttgaac---cttaacgtt--aatgaagttcaggt---------------------------cataggttaggtctagtttgatatttc----cagtcttgaTAA-------ACACT----------------------------GCACTTTTACACAAGTCATC-ACTGGAGAGTT------------CACTGACACCCAAGTTTCAAGAAGTCCTCTCTGGA---------------ATCTCAGGTCCTGTCCAGACATTGATTGGTCTCATCTTGCAGTCAGGATTTTTTTTAAAGTCAAATCTATCT s rn2.chr12 10312378 245 - 46874691 TTCTGAAG---GTTGACGT----ATCAGGCTCAGGTAAGGGACATGTGGAGCCGCATTGGGTACATAGGGTAGGTCCAGTTTGATATTTC----TAGTCTTGATAA-------ACACTTGTG-----TCTGCTC-----------TGCACTTTTACATATGTCGTC-CCTGGACAGTG------------CACTGACACCGGCATTTCAAGAAGCCCTCTCTGGA---------------ATCTCAGGTCCTGTCAGAACACTG----GCCTCTTCTCGTAGTGAGGATTTTTTT-GAAGTCAAGCCTATCT a score=24806.000000 s hg15.chr12_random 43249 322 + 590431 CCTTGAGTGAATTTTTA------AAAACTGATATGtataattcacattccatagcatgtatcctttt-aaagtgtacagttcagtagtttttacattcacaaagttgtacagccactgccactatctagttccagaatgtttttcatcacccccca--------------------agaaaccc--------cctatccattagcagtcactccccatct---------------ccctggcaacagaaagcagattctgtctgtggatttgtgtttgagacatttcatacaaatgg-atcgtgtaatatgtggccttttccttagcatgttttcccttagcatgttttcagag-----------------------ttcatccatg-tt------------------------ggag--cat------------------------- s mm3.chr5 119624387 402 + 149719773 acatacatacatacatacatacCAAAGCTGAGTTGCA-AAGTCAAATGACATGACATGTCACCTTTTAAAAATGTATA-CTTAGTAG---------TTACCAGGTTGTACAGC--------CTTCCCGAGCCCAGAATCTGCTGCCCCTTTCCC----------------------TCAAACCCCAAGCCTGTCTGTCCACttgcagttgctccccacttgtgggtgtttctcaaccttggtagcagcttgccagttc--tctgagtttgcctgttctgggcattgtgtgtaagtggaagcctagaatatgtagtcttccatgctcctttcttttgttttacctgttttcaaagttgaggtcagacagtgtcaatgcttcatccttt-ttatggctgcataatattccatttcaggag--tatactacattctgttgatctgctcatc s rn2.chr12 10312814 418 - 46874691 --------aaaaaaaaaGATGCCAAAACTGAATTGCA-AAGTCACATGAGATGACACGGCACCTTTTAAAAATGAATA-TTCAGTAT---------TCACAAGGTTGTATAGC--------TTTCCTGAGTCCAGAATCTGCCACCCCCCCCCCCAAAAAAAAAAAAAAAAACCAACAAAACCCCAAGCCT-TCTGTCTACTTGTAGTTGTTCGCCACTCGTGGGTGTTTCCCAACCTTGGTAGCAGCTCATTGGTtc--tctgagtttccctgttctgggcagtgtgtgtaattggaatcctagaatatgtagtcttccatgctgttttctttagctttacctgttttcgaagttgaggttggagagtgtcaatgcttcatcctttatcatggccacataatattctgtttcaggggcatatactgcattctgttgatatgctcatc a score=19553.000000 s hg15.chr12_random 43571 150 + 590431 ------------------------------------------------gtgtcagtacttcctccctttttatgactgaataatgttccattatattta--tataccacattttgttgatccattcatctgttgatggccatcgagttgtttctacttttggctattgtgaatagtgctgtgcacatttgtgtgcaagct s mm3.chr5 119624796 196 + 149719773 CATGCTCCTTTCTTTTGTTTTACCTGTTTTCAAAGTTGAGGTCAGACAgtgtcaatgcttcatccttt-ttatggctgcataatattccatttcaggag--tatgctacattctgttgatctgctcatctgctcgt-atcactatgtattttcacatatttcatactgtgaataacgtttggcatatttgtatataagCt s rn2.chr12 10313103 195 - 46874691 catgctgttttctttagctttacctgttttcgaagttgaggttggagagtgtcaatgcttcatcctttatcatggccacataatattctgtttcaggggcatatactgcattctgttgatatgctcatccattggt-atcagtctgtattttcacatctt----actgtgagtaatgtttggcatatttgtatataagct a score=2658.000000 s hg15.chr12_random 43721 120 + 590431 tttgtatggacatgt--ttttaatttgaggggatatatacctaggagtagaattgctgggtcatattgtaaccctgt-----------------------------ttaactttgtga----------------------ggaatatagctgtttttttatgtag---------------ctatataa s mm3.chr5 119625131 112 + 149719773 GATG-----ACATGTAACTTTAATCTTTTCAGGTGTAAAACTGGGAGTGGAATTACTTGGACATATGATAAGTTGGTATAGT------------------------TTGaatatataa--------------------------------ttattttatataaaG---------------AGAATTAg s rn2.chr12 10313424 184 - 46874691 TATGC----ACATGTAATTTTAACCTTTTCAAGTGTAAAACTGGGAGTGGAATTACTTGGACATCTGGTAAATTGGTATAGTAAATTAACTTTTAATTTGCAGTAATTAAATATGTAAGTTCTGAGATTAATCAGTTCCTTAAATTTGCCTGATGTCACATAATAGATATATGTGTTTTCAGCGTTAc a score=13470.000000 s hg15.chr12_random 43871 111 + 590431 GGGAAAATACTTTAAAAATTGCAGCAATCAAATATATAA-ATTCTGAGATCAATCAGTACTTTAAATATGCCTGATTTCATAATGAGC------TGTGTGCTTCCAAGAGAAAATTGT s mm3.chr5 119625419 111 + 149719773 AGAAAATTAACTTTTAAATTGCAGTAATTAAATATGTAAAGTTCTAAGATTAATAAGTTCTTTAAATATGCCTGCTGTCAC-ATAGTC------TGTGTTTTTGAGAGAAAACATCAc s rn2.chr12 10313499 109 - 46874691 AGTAAATTAACTTTTAATTTGCAGTAATTAAATATGTAA-GTTCTGAGATTAATCAGTTCCTTAAATTTGCCTGATGTCAC-ATAATAGATATATGTGTTTTC-------AGCGTTAc a score=29120.000000 s hg15.chr12_random 43982 470 + 590431 GGAATATTAATAAGGAAGTGTGAGTGGATTTAGTAAAAGAGCC-ATC------------TAGGACTAATGAAATAGCAGGGTTTAGGAAGCCATTGACTAGTGGCTTTCTGACTAT----TCTGAGTGGTCTTTCATTCTGTAATACATAAGATTACAGGGTTGATGGATAGAGGAGGTTTGCTGTTTGCTTTTTAAACTTCTGTTCCTTGGTATTTTTCTCATTTTGCTATATA--------GGTGTGTTGCAGTTTTATAAGTTACTTATTAAGGTACCTTTATTTTTGAAGTCATTTCTTCATTTGTTATAGCTTCAGAGCTACTTTTCCTTTGTTCACAAA-TC----TTTTGAGATTTTCTAGCTTAGTTTAAAATTTTCCTAACTTACAGTTTATCTCTTGATTTGTTAACAGTCTCTGTAAAGGATTCTGGTTGAATCCTTTTGTAGTGCAAGTAATTGAATTT--TAGAAGCATAACTGTTTA-----TTAAGGAG-----------------GTT s mm3.chr5 119625680 427 + 149719773 GGA-----AAAAAGAAAGAGTGAACTGTTGAGAAAGAGGGGAAAGTC--------CGGACAGGGCTGTTGAGT-------------------GCTGACTAGCTGCTGTGTGGCGTTCAGATCCTGGGGGCCGATGAC-------------AGATGACAGGGTGGATGG--AGAGGACGCCTGCTGTTTTCT-----GAGCTCCACCCC---------ACCCCACCCTGCTGTGTG--------GGCGAGTTAGACT-TTGTAAGGTGCTTA-GCAGACACCTTCACTTTC--ACCCATTGC--------------CTTC--AGCTACTTTTCC--TGGCCACCAG-TTGTAATTTGGAGACTTTGG-GTTCAGCTTGACATTGTCCTGACTTTCAGCTTTTCCCTCAAGGCGATAATAATCTC--TAGAGGGCTCTGGATGGATCTTGCTGTC-AGTAAGCCATTGGATTTTATAGAAGCACAG-TGCTTGTACTTTTTAGATAGATAGTTGCAAAGACTTGTT s rn2.chr12 10313768 418 - 46874691 GAA-----AATAAGAAAAGATGCACTATTGAGGAAGGGGAGAA-GTCTGGATTCACGGACAGGGCTGCTGAGG-------------------ACTGACTAGCTGCTGTGTGGCTTTCAGATCCCGTTGGCCGTTGAC-------------AG-------GGCTGGTGG--GGAGGGTGTGTGCTGTT---------GAGCTCTGCAGC---------TCCCCGCCCTGCTGTGTGCTGTGTGGGCTGAGTTAGACT---GTGGGGTGCTGA-TGAGACACCTTCACTTTC--ACCCATTGC--------------CCTC--AGCAACCTTTCC--TGGCCACCAGATCGTAATTTGGAGACTTTGT-GCTCAATTTGACATTGTCCTGACTTTCAGCTTTTCCCTCAAGGCGTTAATAATCTC--TAGAGGGCTCTGGGTGGATCTTTCTGTAGAGTAAGCCATTGGATTT--TAGAAGCACAG-TGCTTATAC--TTTAGATA---------AAAGACTTGTT a score=40236.000000 s hg15.chr12_random 44452 426 + 590431 -----TTAAATTGTAGCAGAAGGTAGATTACAGATGCAAGCT---GTTGTGGAGCttttttttttttttttttttttttttttGAGGTGGGGTTGCTGCATGGGAGGAGGCTGTACCCTGAACTTTAGCACTGGTTTGTGAAACTGG----GCAATACATAACCTGAATTGTTGCAACAGTATCCAAATGGAGTTTGTACTAGTGTGTGACACCAGAAGCACTACACCGGGTTAGAATGTGACCTACAACCATGTCCTTTGAGTAGCTCAAATGCTAAAGTTAAGTTCAAGCTAAATGTCAAATTCATTTTAT---GTT-CCCATGCCTTTTAGAGAGAGGTCTTGCCTGGGGCTTTAGGTTCAGAAGTTTTAGGAAAATGCTTTGCAAAAGTAAGTTAGCAGTATTTTATTTCTAAAGAAATTTGACTTTTCAAACTGGAA s mm3.chr5 119626289 349 + 149719773 ACTTGTTGAATCTTTGGGGAAGGTAGGGTGCAGATG--GGCTCCCGTTGGGGAGGGATTT-----------------------------GGGGTGCT---------AAGGAATCACC-----------------------AACCCGG----GCAGCATGTGATCTGAAAGGCTGTAGCAATGTCCAGGTGGACTTGGTGCTGGTGTGCGGCTGCAGGAACACCACACCAGGTCAGAATGTGACCTACAAGCACGTCCTCTG-GCAGATCAAATAC--TCGTCAATGTGAGGCTAAATGCCAAGTTC-CCTTATGTAGTT-CCCGTGTCTTTCCTA---CGGCTATGCCTAGGCCTTGGGATTCAGACTTCTCAGAAAAACAGTTTGTA--------TTTTTTGAATCTTATTTCTACAGAAATTGGACTTTA---------- s rn2.chr12 10314179 348 - 46874691 ACTTGTTCAATCTCTGGGGAAGGTAGGGTGCAGATG--GGCTCCGGCTGGGGAGGGATTT-----------------------------GGGGTGCT---------GAGGTATCACT-----------------------AAACTGGACAGGCGGCATGTAAGCTGAATGGCTGCAGCAGCATCCAGGTGGACTTGGTGCTGGTGTGTGGCTCCAGGAACACTACACCAGGTCAGAATGTGACTTACAACCACGTCCTCTG-GCAGATCAAACAC--ACGTCAACTGGAGGCTAAATTTCAACTTC-CTTTATTTAGTTCCCCGTGTCTTTTCTA---TGGCTCTGCCTAGGCC------CTCAGACTTCTCAGGAAAATGTTTTGTA--------TTTTTCGAATCTTATTTCTAAAGAAATTATACTTTA---------- a score=8176.000000 s hg15.chr12_random 44884 116 + 590431 GTTTATGAAAAATAATG-------TGAG--TTTGCCTTTCAAAATTAGTTGTTAACTTTTGATCTCTTTTTAAGA----AGTGATGTCCTGGATCCTAATTT-TTGTTGTTAGTAATAAAATTTATGAGT s mm3.chr5 119626644 119 + 149719773 -------GAAAATAATATGCCCGGCGAGCTTTTATCTTTCAGAATACG-TGCTAACTTCC--TGTCCCTTTGAGAGAGAAGTGGTGA-AGGGCGCCTAGTGCGCTGCTGCTGTTAGGAACACTTATGAAC s rn2.chr12 10314661 111 - 46874691 -------GAAAATAATATGCCTG-TGAG--TTTATCTCTCAAAATACG-TGTTAACTCCC---ATCCCTTTGAGA----ATCGGAGT-TTGGCCTCTAGTGCACGGCTGCTGTTAGGAACACTTACGAAT a score=26305.000000 s hg15.chr12_random 45364 596 + 590431 GGGAGTTTTCTG-TCTCCCTGAGAACTAAAATAATTTGTTTCCTAACAGTTCACAAA-----------------------------ATTGCATATCATAAATCAAGACTTTTTGTAAAAGCTGACCTATTGCAGAG--------------------GGCATTA-GGCTAACACACGACTTATTATTCATTTCAACTTGAGTTGACAACTGGCACAGCTCTTTCAATTTAGTTTAAAGTTTTTAAAGAAGAAAAGAGATGCTAAATGTTTTTGAATAAAATCTCTAACAGGAAAAATCCCCAACAGGATTGGGGGTTGAGGATTGGGCAATGGGGAAGGACAGAAG-CTTTTCTTTAAGGAGTAAAAATGCTTCATTCTTTTTTTTTTCTAAGCCAGTTG----TTTCATATCTGACACAAAACATGATTCTCCCATCCTTCTagtgctttatatagtgccttagaagttgcaaagcattttta--------------tgttttac------cttattta------atctttgtaactacgaagctgctgctcttatctccacttAATGTGAATCTGTTTCCTCATCTATAAAACTGACACATCAAGTAAGGGTGGTATAGTTAGTATTATATTGGGACTTGAACCTAGGTCTC--TTGCTTGCATGTCTAATGCTTTTAA s mm3.chr5 119626763 480 + 149719773 GTGAGCTTCTTGTTCTTTCTG------------------TTGCTAAAA--------------------------------------AGTTCATA---GAAATCAATCCT-------AAGGC----------CAGAG--------------------GGCATAGCTGATAGCAGGTACTTCACC--TCCTCTGGGCTTGAGCTGGCTTTTGGCTCAGCCCTGCCAGTTTACTTTTCGATCATTACAGTGGAA--GAGGGGCTGAGTGCTTCCG--TAAGATGCC----------------------AAGTGGGGACTTGGGGGTGGAT--TGGAGGAGCAAACAGGTCCTTTGTGTAAGGAGGAAAGG----CCTCCCTTTCTTTCTCCTACGCCA--CGCAGCTTGCTTACCTGACTC----CAGGAGTCAGCCGCTGC-------CCCTGAAGGCCGCACTGGAGATGGCAGAGCAGAGCAGT-------------TGTGTTGCTGCAGACTCATCTG------ACC--TGTCAC-------CTGCTGC-------------------------GTTTAGTCGTCTGTAAAGTTAACTAGTC-GTTAGGTTTGGTGCAGCTGGTGTTGAAGTTAGACTCAAACCTACGACTCAGTTGCGT---TGTCTAGTGCTTTTAA s rn2.chr12 10314772 550 - 46874691 GCGAGCTTCGTGTTCTTGCTG------------------TTGCTAAAAGTTCATAATGCGAGCTTCGTGTTCTTGCTGTTGCTAAAAGTTCATA----AAATCAACCCT-------AAGGC----------CAGAGCCCCAGCAAAGGCCACAGAGGGTGGCGCTGCTAACAGGCA-GTCACTGGTCATTAGGACTTGAACTGGCCTTTGGCACAGCTCTTTCAGTTTAGTTTTAGATCGTTAGGGAAGAAAAGAGGGGCCAGGTGCTTCGA--TAAGATACC----------------------AAGTGGCGACTGGGGGGTGGAC--TGGAAGAGCAGACAGGTCCTCTGTGGAAGGAGGGAAGA----CCTCCCTTTCTTTCCTCTAAGCCA--TG----TTGCATACTTGACTC----CAGGAGTCAGCCGCCTC-------CCCTAACATGAGCACTATAGACGGCAGAACAGTTCTGTGGCTCTTGAAAACTGTGTGGCTCCAGACACAGCTGCACCCGACC--TGTCAC-------CTGCTGT-------------------------GTTTCTTCATCTGTAAAGTTTAGGAGTG-GGCAGGTTTGGTGCACTTAATGTTGAAGTGAGACTTGAACCTAGGACTCCATTGCGT---TTTCTAGTGCT----- a score=20616.000000 s hg15.chr12_random 46434 521 + 590431 TGTGTAGTGCTTTTAAATAAATGGATGTTTAGTGCTTATAAAAGTAACACATCTTCAGAAA-AGTACCATATAAAACACCTATAAATCATAACTCAGCTATAGTAAGCTATAGTCATTGTGGTTCCCTCTAGCCTTTGTGTATATAATTGTATACATGTTATTAAAAAACAGAATACATGTTGGATTAATATGCATCCTACTCTGTAAAGCTTTTAAAAAGTTGCAACAGTGTGCAAATGGAGTTTTTAATAGTGTGTGACTCCAGAAGCATGCTGGAGTGCATGTTTCCATACTGGTAAGCataactgcatcatattctcctgcatgtatagcccatcagttactaaaccagtcctctatttgtagttatttaggttgtttccaattttctgttataaa-taacactagaatgagtatctctttacatctgaatatttcctcagggtaattccttgaagaggaattcctgggtcaaagcctatgagcatttgcaaggcctttgatataAAGATGACCATAGg s mm3.chr5 119627244 384 + 149719773 CGTCTAGTGCTT------------CCGCTTTGAGCTTAGAAAAT-AACGCCTGCTCATAAAGAGTAGTGTGTAAAGCACCGGTAGCACATACCTTGGCTGCAGTCAG-------CACTG---CTCCCCCTGGCCTTG------------------------------------------------------------CCACACTGTTGAG-----------------CAGTGTGCTAGTTTA-TATTCCACACTGCATGGCT------------TGGTGTGGATGTGTCTATACTGACAAGCAGAGTT-CATCACA-TCTCCTGCAT-TATACATTAGAACTTACTGAATTGGCCCTCTGCTTTTA-TTATTTAGGTTGTACTTAGTTTCCCGCTATAAAGTAACAGTGAGGTGA-CCTCTCTTTAT-TGGGAATAGCTCCTTAGGGTGGATT------GAGGAGCTCTGCAGC---AGGCCAGGAG--TGCACAAGGCCCT---------GTTGCACATAGC s rn2.chr12 10315322 325 - 46874691 ------------------------CAGCTTTGTGCTTATAAAAG-AGCACCTGCCCATAACGGGTCGTGTTTAAGACTCCTGTGGCACATACCTTGGCTGTAATCAG-------CACTG------------GACTTT------------------------------------------------------------GCACACTATCGAG-----------------CAGTGTGCTGGCTTA-TATTCCACACTGCATGTCT------------TAGTGTGGATGTGTCTCTACTGACGAGCAGAGTT-CATCACA-TCTCCTGCA----------------------GTTGGCCCTCTACGTTTA-TTATT-AGGCTGTACTCAGTTCCCTGCC-TAAAGTCACGGTGAGGCGAGCCTCTCTTCCC-TTGGAATAGCTCCTTAGGGCTGACT------GAGGAACTCTGCA---------------------CAAGGCCCT---------GTTGCACATAGC a score=16879.000000 s hg15.chr12_random 47264 260 + 590431 AACTTAAAAAAGATTACGATAGGTCCTCCAGAAAGGTTATA----TATTACTTTCCCAACTGTGGTGAAATTGCTCTCATCAGCAAGCTTATTGTTGATC--TTG-AGTCTGTCTCACTTAAGAATTTATAAATTTACTAGGTTCCTAAATAGTTGTTTTTGAGGTGAATAAGTTCTAGAATGGATTGAATTGTTGGTATGAATCCTAAGGACTACAAAATGACTGCAAAAACTTTGCCAGAGACTACGAAAGTG-ACTTTCTACAAA s mm3.chr5 119627628 216 + 149719773 ACCCAAAAA--------------CTCTGCAGAAAGGTCGAGTGCTTGATGCTCGTCCAGGCGCTGTG-GGTCAGATTCTCCAGTAAGCTCA-TGTCAGCC--TGGTGG--TGTCACATTTAA-CATGCATATACTTACCAG-----------GCTGTCCACAATGTATATCTGTTC-----------------TTGGTGTGAATCACAAAGACTGTTAAGAGATTGC---AGCTCCGCCAGGGTCTACAAAAGTGTACTTCCTACAAA s rn2.chr12 10315647 213 - 46874691 ACCCCAGAA--------------CTCTCCAGAAAGGTTTCAAGCTTGATGCTGATCCAGACGCTGTG-GATCAGTTTCTCCAGTAAGCTCA-TGTCAGCCCCTGG-AG--TGTCACATTTAA-CACGTGTGTACTTAGCAG-----------GCTGTCCACAGTTTATATCTGCTC-----------------TTGGTGTGAATCACA--GACCACTAAGAGACTGC---CGTTCTGCCAGGGTCCACAAAA-TG-ACTTCCTACAAA a score=9533.000000 s hg15.chr12_random 48162 113 + 590431 CTTAGTCTCTTTTCCTGGGGAATACAGGGACATCTAAAGGTTTAAACCTATACCTCTCCTTTGAGAGTTAGAGCCAGCCCAAGCAACTGA---CCTGAACCACACCTCCCACCCTG s mm3.chr5 30213685 109 - 149719773 CTCTGTCCTCTTTAACAGAGAACACAGGGACATCTAAAGG------GCCACGGTATGCCTTTTAGAGTTC-AGCGGCACCTAGCAACAGCCTTCCTAAGCCACGCCTTCTAAGCTG s rn2.chr12 36668376 94 + 46874691 CTCTATCTTCTTTACCGGAGGATACAGGGCCATCTAAAGG------CCTAGACTACTCCTTGGAGAG----------------CAACAGCCTTCTTAAGCCGTGCCTTTCAAGCTG a score=2077.000000 s hg15.chr12_random 48957 45 + 590431 CAGTGACAGTGACTTCCTCTTTCCCCAAGGTCAGCTTCACTTCTG s mm3.chrUn_random 54211618 45 + 117911829 CAATAATAGTTCCCTCCCCTTTCCCAGAGACCAGCTTCCTCCCTG a score=10655.000000 s hg15.chr12_random 51089 132 + 590431 CATATTAGCAAATGCCAAGTACCTGAAGTTCCTTAACCACCTCTTCACTCCAAACCTGAAACCCGTCCTGGCAGCAATGATGAGCACAAAAGGAAGGTGAAGGTAAAGATTCAAAACC-------TTTTCTGACT---TGAA s mm3.chr5 30214174 119 - 149719773 CATATTAGCAAGTGCTAAACCAATGGACTCCCTTAAGCACCT-GCCAATCC-AGTCCAAACCCTTTTCTGGCGGAAAC----AGCCCAG-----------------AGTCTCAAAACTCCTGCCATTTTATGTTTGTGTGAA s rn2.chr12 36668856 132 + 46874691 -ACATTAGCAAGTGCTAAGCCAACGAACT--CGTAAGCACCT-GCCATCCC-AGCCCAAACCCTTTCCCGGCAGAAAC----AGCCCGG-AGGACAATGCAGCCAAAGTCTCAAAACTTGTGACATTTTATGTTTATGTGAA a score=2078.000000 s hg15.chr12_random 51553 68 + 590431 TTTCAAAGCTTTAAGAACTGTGTTTTGTCAATAGTCAAATCGAAGTATACCTTTAATTAAACAATCCA s mm3.chr5 30214340 67 - 149719773 TTTCTAAGGCTTTGGAATCATTTTTAATTAATGATGAGTTCAAAGTGCAGTTCT-ACTAAACAATCCA a score=120608.000000 s hg15.chr12_random 52560 1423 + 590431 TTCCTTAGATATAGAAAAGTACTTACATTCATCATAAAATCCATAAATTCTGTTGATGCTGGCACATTCATGGTTCCCTCTGAGAAGAAAAAAATTCTCAGGATATTTTATTTTGTAGGCCAGTAAGAGGCAGATCGTCTCCAATGACTGCTTTCCCCTGTCCACATAGTCCCCAAGAAACAGGTAGTTGCTTTCTGGTGGGAAACCACCGTACTCAAAAAGTCGCAGCAAATCATAGTATTGTCCATGGATGTCACCTGGAAGCAAGAATTTTGTTACACAGTGTTCCCATACTTAAAGCTCAATCCACTAACAAAGCTTTGGAAAGACATTCTTTAAATATTCATTGTACAA--------TGGCATTGACCTCTAGTAATGAGAGTTTAACTGGGCAGCCAACACTAAGTAATTTCCAATCTTATATCATATTTAGTTCAACTGAGCTTAACAAAAATTTTAAGTATATGTGTATGTCCAGAACCTCACATAAAATTCAACTATTAAGAATTTATTCTGTGGAAAGGGTTATTATGTCCAAGCATGCATTCTTGCCAAGTAACATGGTATCCCTTTCAGGCTGACTGATCAATATCAGATCTCTGACAGCTCAGTCTCTGGGTACTGTGTCAGCAGAACTGCTG-CACT-TCTAGTGAGTCTTGGCCCCATCTGAACAAAAGCACATACACACATACACA-CCACCCCCACCCCCCACCCATCAATGCATTTAGCTTTCAATTTCTCCCTGCTAGATAATGCCAAAGAACATTTTACTTTTAAAAACATGAACACAAA--GTTTTATC-AATGCAAATATGCTATA-----------AGAATATATTACTCAAACGAATAAAGTTTGGTTTTACATTGAGTTAAAACACAGATTATTTGCTTCTATTATGCAGAAAACAGAACCACAAAATCAGTATCAAGGAAGTTCTATTTTTAGCTATAACCAGTGTTGCTTTAAACTTAAACATATTCCTATACATCCATGTAGTTCAGACCTTTCCTCAGCTCTCCATTCTTAGTTTCATTTTTTTCTTTTGCAATGTTTATTCCTTCAGCAAAATATTTTTTTTAAAAATCTGAAGTACATCTAAGTAAACTAAGTCCATTAGAGGTATTTATTCTAAAGCTACTATTTAACTTACTTTTAAGTAGTTCCAAGCTATTCGCAAACAGGATAATCATTCTGCTAGCTAATACAAGGTCATCAACATATCCTTGACTCAGTTAATCAATCATGTAACAAAAGATAACCTGTGTGCCCCAAACTTACCACATATTTTGAGTGGTGCTTCAAGTTCTAGTAGGATAGGCTGACTGAGAAAGATTTCACGAGACTTTAAGCACAGTCCTCTGATTTCATTCTCCTGAAGCTGGACATTCTTACCAGGCTTGGACCCTCTCACTGCAAGAGAAAAATCGCAATTAG s mm3.chr5 30215756 1021 - 149719773 TTCCTCAGA---GGCAAAGTACTTACACTCATCATAAAATCCGTAGATCCTATTGATGCTGGCGCACTCGTGGTTCCCTCTGAGAAGAAAGAAGTTCTCCGGATACTTGATTTTGTAGGCCAGCAAGAGGCAGATTGTCTCCAGGGACTGCTTGCCCCTGTCCACATAGTCCCCGAGAAACAAATAGTTGCTCTCTGGAGGAAAGCCACCGTATTCAAACAGACGGAGCAAATCATAGTACTGCCCGTGGATGTCACCTAAGGGTGAGAACAT-------CAGTGTCACA---------AATCAGCAAACAGACAAAACCTTGGCAAGACGCCCCTCAGACACTCATCTCATA---------TGACAATGGCATCTACAA-----CGTTCA------CCGCCAACAC----GAATTTCCCGGTT-GTAGCATATTTAGTTCAACTGACCATGTAAAA---TTTAA----ATGCACAGGTCCAGAGC-TCCCCCCAGATACAACTA--ATTAATTTATT-TGTGGTAAAGAGTATCCTGTCTCA-CCTGT-TTCCTGCCAAGTACTGCAGTCC-----------------------------CCT----GAGCTCAGCTTCAGGGATTTATGTGAACACATCCTTTGTCACTGTCCAGTGAGAC-GGGCCCCCTC------ACAACACTTACATTCA-AGACACCCACCTTGGC-----------CATGGC------TTTTCAACTT----CTGCAAGGTCAAAGCCAAGGTCTCCTCGCTC---------TAAACACACA--GTTTATTCTGAGTCAGAGATGCAATA----CCCACCTAGACTGTGCGACTCTA--GAGGACGGTCTG--------------------------TACCTGCTCCTA-----CAGCAGAGTGAGCC----------------------------------------------------AAACTAGACCAGGCC-----------------------CCCCACCGCACCCCCCCATGCCCA--------------------------TGCTCCTTCAG-------------------------AGAACATC------------------------------------------------------------------------------------------------------------AAAGGCCACCAGTGTGCCCCCAGCTGAGTAAC-------------------------GGGAGTCCCACACTCACCACATATCTTGAGTGGTGCTTCAAGTTCTAAAAGGATAGGCTGACTGAGGAAGATCTCCCGAGACTTCAGGCAGAGTCCTCGGATCTCGTTCTCCTGGAGCTGGACATTCTTGCCTGGCTTGGACCCTCTCACTGT-GGAGAGAAACAGCAGTCAG s rn2.chr12 36670013 1043 + 46874691 CTCCTCAGA---GGCAAAGTACTTACACTCATCATAAAATCCGTAGATTCTATTGATGCTGGCACACTCATGGTTCCCTCTAAGAAGAAAAAAGTTCTCCGGATACTTGATTTTGTAGGCCAGCAAGAGGCAGATCGTCTCTAGTGACTGTTTGCCCCTGTCCACATAGTCCCCGAGAAACAAATAGTTGCTTTCTGGAGGAAAGCCACCGTATTCAAACAGACGGAGCAAATCATAGTACTGCCCGTGGATGTCACCTGGAGATGAGAACAT-------CAGTGTCACCGTCCGCACTACTGAACCCATGGACAGAACCTTGGCAAGACACCTTTCAAACATTCACTCCATACACAAACATTCACAATGGCTGCTAACA-----AGTGCA------CAGCCAACAC----TAATTTCCCAGCTGGTAGCATATTTAGTTCAACTGACCATG---------TTAA----ATGCACAGGTCCAGAGCTTCCCCCCAGACACAACTC--ATTAATTTATTGTGTGGTAAAGAGTATCTTGTCTGA-CCTGC-TTCCTGCCAAGTACTGTGGTTCCCT-------CTGA--GATCACTG--AGACCT----CAGCTCAGCTTCAGGGACTTATGTCAGCACATCCTCTGTGAGTGTTCAGC--GAC-TGGCCCCTTC------ACAATGCTTGCATTCA-AGACA-CCACCTTGGC-----------CAAGGC------CTTTCAACTT----CTGCGAGGTCAAAGCCAAGGCCACCTCACTC---------TAAACATACATGGTTTACCCTGAGTCAGAGATGCAATGCATCCCCACCTAGACT-------------GAGGACGGCCGG--------------------------AACCTGC-CCTA-----CAGCAGAGCAAGCC----------------------------------------------------AAACTAGACCAGACC-----------------------ACCCCACGCA-CCCACAATGGCCA--------------------------TAATCCTTTGG-------------------------AGAGCATC------------------------------------------------------------------------------------------------------------AAAGGCCATCAGTGTGCCCTCAGCTGAGTGAT--------------------------GGAGTACCACACTCACCACATATCTTGAGTGGTGCTTCAAGTTCTAAAAGGATAGGCTGACTGAGGAAGATCTCCCGAGACTTCAAGCACAGTCCCCGGATTTCATTCTCCTGGAGCTGGACATTCTTGCCTGGCTTGGACCCTCTCACTGT-GGAAAGAAATAGCAGTCAG a score=31566.000000 s hg15.chr12_random 55286 293 + 590431 CCAAAAACTTGGGCAGACTGCCCAGCAGGAAGCTTTATTTTTGGCTAGGAAGGAAATCCTAGAAGCTTCTGGTTTCAACGTGAATTTTTTTCAGCAGAGTCCCACACTTATGAATGAATAGCTGACTC-TAAGTCTTCTAGGAGAGTATTTCTGCGATAAATAGCTC------ATACCATATAATGGCAAGCTTTGT------------------------------------TTTAT-------GAATGCTATTGCAGTTAGTCAATGCCATCAGATGAAATCAATGTTGCTAACAATTTTTTTTTTTGGCTTTGGACGCTCTCCACTGTCACCTTTGAACA s mm3.chr5 30219515 280 - 149719773 CCAAAAACCTGGGCATGCCGCCCAGCAGGAGGC-TTATTTTTGGTTAGAAGGGAACTCCTGGAAGCTTCTGGTCTCAACAGGAATTTTCTTCAGGAGAGCTCTGCATTTGTGCACGAGTGGCCCACTCTTGTGTCTTTGGTGATAATCTTCG-----TATCTGGCTTCTCCTGGTACAGCCCACAGGCTTGCTTTGT------------------------------------TACATACATACAGGGTTCTACTGCAGAGAGCTAGC--------------TGGGTGTTGCTAATA------TTCCTTGATTCTGAAAAC-ATCCACTGCCATTTTTAGACA s rn2.chr12 36674185 306 + 46874691 CCAGAAACCTGGGCAGGCTGCCCAGGAAGAGAC-TTATTTTTGGTTAGAAGGGAACTCCTGGAAGCTTCTGGTTCCAAAAGGAATTTTCTTCAGGGGAGCTCTACACTTGTGCATGAGTGGCCCATTCTTGTGTCTTTAATTAGAATCTCCC-----TATCTGGCCT---CTGGTACAGCCCACAGGCTTGCTTTGTtacatacatacatacatacatacatacatacatacatacatacatacaGGGTTCTACTGAAGAAAGCT-------------------GGTGTTGCTAATA------TTCCTTGGTTCTGAAAGC-ATCTACCAT--TTTTTGGACA a score=12361.000000 s hg15.chr12_random 60397 245 + 590431 TGGGTTGAAAGATGAAAACAGGCTGGCAGAAATGGGTCACCTGTGAAATGAAAAGTTCCAGTGTTCCTAATG-TTTGCAAACTGTATCTGGGTAGGTG-CAATCCTCATTCAGA-GTCAAATATCATAAAATTACTTTGGGGCCATCTACCACGTGTTTGTTTGAGATTGGACAAAAGAGGCGGTGAAATTGGCAAAT---CATATCATAGCAGGTCCTGGttggaataatggga-tatcagacttgaagag s mm3.chr5 30119899 195 - 149719773 TGgaaagaaagaaagaaagaaaCTAAC--AAATGAGTC------------------CCCACTGTCCCCTAAGGCTTTCGAAATGTA--TGAGCAGATAACAGTCTACACCTTGAAGTCAAATGTCAGAAAATTACATTGAGGC------------------TTGAGACTGGATAAAAG-------GATTTTGAGAACT-----TTTCACAGAA-----TGATTTGAAGCACAGGGCTGTAAGACTTAAGGAA s rn2.chr12 36588977 191 + 46874691 TGG---GGAAAAAAAAAAAAACCTAAC--AAATGAGTC------------------CCCAGGGTCCCTAAGGATTCCAAAAACGTA--TGAGCAGATG-CAGTCTACACCTTGACTT--------------TTACATTGGGGCCATCAG---------GGCTTGAGATTAGATAAGAC-------GACTTTGAGAACTGAACTTTTCGCAGAA-----TGGTTCGAAGCATGGGACTGTAAgacttgaggag a score=12393.000000 s hg15.chr12_random 62402 224 + 590431 TATTAAGTGTTCATTTGTCCCCTTTATCACAATAC----AGCAGACAGAAGTTATCTGGCAACCTTGTGAGATGCAGCTAAAAT--AAAAAGGTGAAGCCAGT--GTTGACAGAGTCTGGGATAGAGAAAATTCAGAGA------CAGTG-ATCTCACAGATCCCTGTGCTCCTTCCAAACACCCACGTTAGTGGCGTTGGGACGGCGCTTCCTAAATTTCCGTCCAACTCATCTGCTT s mm3.chr5 30120630 165 - 149719773 aGTTAAGAATTCTTTTGTTTCTCTTATCATAAATAAATCCGTGGACAGAAGTGCTCTGGCGACCTCCTGCGATGTATCCAAAGGCAAAGAAAGTAAAGAAAGT--GTT-ACA-----TGGGGT--AAGAAATT------------CAATGTAACTTAAAGGAACCAA-GTCACTTCTAAACATGCGCT--------------------------------------------------- s rn2.chr12 36589645 175 + 46874691 aGTTAAGAATTCTTTTGTTTCTCTTATCATAAATA----CGTGGATAGAAGTGGTCTGGCGACCTCCTGCGTTGTATCTAAAGGCAAAGAAAGTAAAGTCAGTAAGTA-ACA-----TGGGGT--AAGAAATTCAAGGATGGTGGCAATATGTCTTAAAGGACTCCA-GTCGCCTCTAAACATGCACT--------------------------------------------------- a score=803.000000 s hg15.chr12_random 62626 24 + 590431 GCGTCCGGACATTTGTTAAAAATA s mm3.chr5 30120795 21 - 149719773 GCG---GGTCTTTTATTAGAAATA a score=2529.000000 s hg15.chr12_random 62985 64 + 590431 ctgattcctgggtcctgccctagact-aactgactcaggatctcctgaggtggtacctggaaatc s mm3.chr5 30120816 65 - 149719773 CTCTCTTCTAGGCTCTGCCCTAGTCTTGACTGACTCCGAATTCTGTGAGGCTATAGCTGGGAATC a score=42261.000000 s hg15.chr12_random 63259 346 + 590431 GATTTACACGCCCCTCGTTTACGCCAGCT-----------------TCACACCCGCTCACTAGTGCTCGCCCCTGTGCCTGCCATCGCTGCCTCACCCAGGCGCCGCCTCCGGCCTCATCCGGGATCCGCCCCCTGCCTC----------------------------ATCCAGGCTTC--GCCCAGTCAGTCTCCGGCAGCTTCTCGCGGCTTCGCAAGCCCCTTCCCGTGATGCCCCGCGCCTGGCTGTCGCGGTTGCCGGG-CAACGCGCTG-------TCCATGTCGCGGGCCTCGCTGGGACTCCCTGGGAGATGAGGCCGCGA-GTCTCCCGCCGCTCCTGGTGGTGCTCCTGGGCTGCTGGGCCTCCGTGAGCGCCCAGACCGATGCCACCCCGG s mm3.chr5 30120939 361 - 149719773 AGTTTACATCTTCCGATTTTCTGAGGGCTCCTTAGAAAGAGCTGTCTCATAccccgccccca----ccggccccgcccctcctctc-cgattccgcccaggccccgcctatagcctcgcccagctcccgccccATTCGCG----------------------------GGTCTGACTTCAGGCCCCACCTTCTTCC-GCAGACCAGTTTGGCCTCGCGAGCCCTTTCCCGTGATACCTAGCGCTAGGCTGTGACTGTTGCCCGGGCAACAGACGGGCCTAGCTCCCCGGCGCGGGCTACTCTG-------CTAGGCCATGGGGTCGCGGGGTCTCCCGCCGCTCCTGCTGGTGCTCCTAAACTGCTACACCTCTTCGAGCACCCAGGTCATTGCCATCCCGG s rn2.chr12 36589837 388 + 46874691 AGTTTACAGATTCCGGTTTTCAGAGGGCTCCTTAGAAAGAGCAGTCTCAGACCCCGCCCCCA----CGGTCCCGGCCCCGCCCCTC-CGACGCCAATCAGGTCCCGCCCATAGCCCTGCCCAGTTCCCGCCCCTTTCGTGATCGGCGGGCCTTAACCCAATCCCCGCTGGTCTGGCTTCAGGCCCCACCTTTCTCC-GCAGACTAGCGTGGCCTCGCGAGCCCTTTCCCGTGGTGCCTAGCGCTCGGCTGTGACTGTTGCCCGG-CAACAGACAGGCCTAGCTCTCTGGCGCGGGATAGTATG-------CTAGTCCATGGGGTCGCGGTGTCTTCCGCCGCTCCTGCTGGTGCTCCTAAACTGCTGCACCTCTTCGAGCACCCAGGTCGTTGCCACCCCGG a score=28192.000000 s hg15.chr12_random 63605 162 + 590431 ---------------CGGTGACGACAGAGGGCCTCAACTCCACCGAGGCAGCCCTGGCCACCTTCGGAACTTTCCCGTCGACCAGGCCCCCCGGGACTCCCAGGGCTCCAGGGCCCTCCTCCGGCCCCAGGCCTACCCCAGTCACGGACGGTGGGTACCATGTGCCAG--CTCCTGGAG s mm3.chr5 30121300 176 - 149719773 CTGCGGCCACCCCAGCAGTGACGAAGGAGGATCTCAATTCCACCAAGGCCACCCCCACCACTCTGCAGCCCTCCCTGTCGCCTAGGACCCCGGGAACTCCCAGGGCACCGGAGC---GCTCTGGCCCCAGGCCTACCCCGGTCACGGACGGTGGGTACAAAGGGGTGACCCCCCTGGAG s rn2.chr12 36590351 175 + 46874691 CCGAGGCCACCCCGGTGGTGACGAATGAGGATCTCAACTTCACCGAGGCCACCCCCGCCACTCTCAGACCCTCCTGGTCTCCTAGGACCCCGGGAACTCCCAGGCCACCGGAGC---TCTCTGGCCCCAGGCCCACCCCGGTCACGGACGGTGGGTACAAAGTGCTAA-CTCCCTGGAG a score=33829.000000 s hg15.chr12_random 66103 595 + 590431 ATCGGAGCAGGAGGCTGA----------------------CTGTGAGTGGAGAACTGGATGGAAAATTGCAGG--TGGCTTCAGGCAGTGTTGGTGGA--GAAGAGTGATAACCCTTCATCTTGAATCTGGGCTCTGTTCATTAGTACCCTGCTCTACAAGCCAGGTGTGCAGATGCGATAGGAGGCAAGGGCAGCTGAGTGCTGCTTAGACCTGAC--AGGGGCTCAACAGCTACTTGGTGGATGATTAAGTACACTCGCATCCTGGGTAGAAACCTTTTTC---CTAAGTGGAGTTATTAAACACTATTGCTTCGTCCTTAGTAGTCTTACAGCTGCCTATAAGGGCTTTAAGTTTTGAAAACAAAGCAAGATAGTAATTTTAAACATA-----CAGGGAACCTAA-AGCACTTTTAATTTTTTACATTAGCGTGCATAAGTTGT---GTCATTTTACTAGGCACATAGAAGAGTTCTCAACTAGAGAGAAGCACTGTAAACTTTAGGGGGAAAGCTTTTGTGTCTTAGACTAAGAAATCATGGCATATTAACAA---AACCTTCCCCTTCACCTCACACATTTTTTTTGCAGAGTGCATTATACC-TTTTACGGGGTACTATTTTTTTTTTTTTAA s mm3.chr5 30121593 539 - 149719773 ATCATTGCAGACGG--------------------------CTG-CAGTGGGGTACTAGATAGAAACCTACAGAATGAGTTGAAGGCAGTACTGGTAGAAGAAAGAGTGCTAA---------GTGGATCTTCGTCCTCTCCA---------------------------CGCAGACACAC----GGACATGGGCATCCCAGTTGTGTCTAGA--TTAC-TGAGAGCCCAGCAGATATTTTCAGGGTGATTAAGTGCGTTT----------TAGACATTTTTTACCAGCTAAATGGAGTTATTAAACACACCTGTTTCATCCGTA-TCTACTTACCGC------TCGGAATTTGAAGCTTTGGCAACAATTCGTGGTTGTAAATTTAAACACATGAGGTAGTGGACTTAATTGCTCTCTCCCTTTTACCCATCCCAGTGAAGGGAGTATGGCGTTCTTTTAGTGAGTACGCGCAGTTGTCCATGGCTAGAGAGGACCTAG------TCAAGGAGGAGCTAATTTGTCTTTCGGACTAAGAAAGCATTTTTCATTTATCAATAAAACTCCCCTTTCCCTTCG-----TGCCTTTCCAGAG--CGTTATACCACTTTCGGGGGGAATTTTTTCTAAATCTTAA s rn2.chr12 36590670 507 + 46874691 ATAATTTCAAACAGCTGGAGTGTTGATGCAGAAAGTGACTCTG-GAGTGGAGTTCTAGATAGAAACCTTCAGAATGAGTTGTAGGCAGTACTGGTAGAAGAAAGGGTGCTAA---------GTAGATCTTAGTCCTTTCCA---------------------------TGCAGACACAC----GGACGTGAGCATACGAATGCTGTTTAGA--TGACTTGAGAGCTCAG--------------------------------------------------------------TGGAGTTATTAAACATGCCAGCTTTACCCTCA-TCTTCTTACCT-------------TCTGAAGCTTTTCCAATAATTCGTGGTTGTAATTTTAAACACATGAGGCAGTGGGCCTAATTGCTCTCTTTCTGCTTTCCGTGCCAGTTAAGGGATTGTGGCGTTATTTTAGCGAGCATGCCCAGTTGTCCATGGCTAGAGAGGACCTCA------TCTAGAAGGAGCACATTTGCCTTTCGGACTAAGAAA-CATTTTGCATTTATCAAT-AAACTTCCTTTTCCTTTTG-----TGTCTTTCCAAAGCACATTATACCATTTTGGGGGAGAATTTTTCTTAAAAAAAAA a score=5855.000000 s hg15.chr12_random 67291 121 + 590431 TTTCTAAAGCTCCTTTTT--------ATCGTG------------------AAATAATTCATACGTACAAATAAGAATGTTGGGTGGACACTAGCAGCATTTGCTTCAGATTCCTTTTTTGTTAATTTTGTTTTTTGGCTTGAGATCt s mm3.chr5 30122488 132 - 149719773 TCTCTAGAGCTTGTTTTTTTGTTTTGGTTTTTTTTTTTTTGTAAATTTTGAAACCATTCATTCATACAAATAAGAATGCTATGACATC-CCGTCAGCATTTGGCTAAAATTCTTTGTTTG--------------AAGCCTGAGATTA s rn2.chr12 36591604 96 + 46874691 tcTCTAGAGGTTGTTTTT--------ATTTTTTTTTT-------------AAATCATTCATTCATAGAAAC---AATGCCATGATGTC-CTA-------TTAGCTAAAGTTCTTT-------------------AAGCCTGAGATTG a score=2487.000000 s hg15.chr12_random 68009 37 + 590431 AATCTT----CTTT-----TGAAAAAGAAAACGTTACAGATAAGAT s mm3.chr5 30122622 42 - 149719773 GCCCCT----CTTCCCCAAAAGGAAACCAAACATTACAGTTAAGAT s rn2.chr12 36591702 43 + 46874691 GCCTCTCCCACTCCCCC--TAGGAAACAAAACATTACAGTTAAGA- a score=610.000000 s hg15.chr12_random 73607 12 + 590431 ccaagtcatgga s mm3.chr5 119556234 12 + 149719773 CTGAGTCACACA s rn2.chr12 10234686 12 - 46874691 CTGGAGGACACA a score=7701.000000 s hg15.chr12_random 73619 155 + 590431 gcccaggggcagatcctgcttttccagttccccacagtgtgtgaccttggacaaggccccccctcaccaggaccctaaaggatggcctcaacctcagggttgttaggaattgaaatgaaatagtgcatggaaggaagttagcaGCATGCTGAGAT s mm3.chr5 119556246 91 + 149719773 GCCCTGGGGCTGAGCCTG-----------------ACTCTGCTATCTT---------CCCCCTGCACTGAGGCCCTCAATGCTGGGCT--------GGCTTGCCATG---------------------GAAGGGAAG---GTAGCATGT------ s rn2.chr12 10236865 91 - 46874691 GCCCTGGGGCTGAGCCTG-----------------ACTCTGCCATCTT---------CCCCCTGCACCAAGACCCTCAATGCTGGGCT--------GGCCCACTATG---------------------GGAGGGAAG---GTAGCGTGT------ a score=3584.000000 s hg15.chr12_random 73774 408 + 590431 GATATGAGGTGTGATAAAATAAGCAACCATAGTAATACACGTTGCTGCCATTGTGTCTTA---GAGTTTTGGGGTGAGGGTGGT---TAATATGCAAATCAAGTCCCCCAAAATAGCTCTGGGAGGGAACAGGGAAATGCAAACTGAAGGGACATCAGGCCATGGGAGTTGGGAGTTGGCTGACTTTCTTAAAAAGTACCTTTTTCTCCGATTGTCAGATAACAATGAACTAGGGAC---TTTCCCCCTCCCACAGATGGCGGCTTCTGAGCCTGTAAAAATAGGCATCCACAAAATGCTTTTCTCTCCTTCGCTTCTAGGTCTGTCTTTTTCACTTTCCCCTTCTCTCCCAGATGGTAGTTTTTCTGGTCTAATACCTGTAAAAGAGGTCAGCAATATGTTTACCTTGAAGGAGTA s mm3.chr5 119556337 351 + 149719773 ACTATAA--CACAATAGATGAACCAGGCATGATGGTAGCTGATGCTGCTGAAGGGTCTTGTTGGAGTTACAGGTCATGGATAGAGAATAACAAGCAGATCAAGGAACTGGGAGTAGCTCTGAGAAAGAAAAGGGACTTG---------GGG----CAGGCTCTAGGTCTTGGAAGTTGGCTGCCTTTCTTACAGCATACTCTTTGCTGT-AGAGTTGGATGCTGCTCTGCAGGGTACAGACTTTCCCCTCCTACAGGTGGCAGTTT-GGTCCCTGTGGATACTGGCAGCCTCAGGAGGCATATGT-------------AGATTAGTC--------------------------------ATTTGTCTGATGTGACACACCTGCCACATGTCG----TGCCTTTTTCTCGGAGGGGCA a score=555.000000 s hg15.chr12_random 74182 32 + 590431 GTGCCTAAGATTTTGTTAATCCATTCATTTAT s mm3.chr5 119556688 18 + 149719773 GCTCACTG--------------ATTCAATTAT s rn2.chr12 10236958 18 - 46874691 GCTCCCTG--------------ATTCTATTAT a score=33210.000000 s hg15.chr12_random 74516 757 + 590431 GTGACTGAGGAAGAGTCTCTGCCCTCCCAGCGTTCA-------CAGCCCAATGTGGTGGGGACAGTGTCTCAGTGGTTGTTAAGACAGTGTGACGTACACCCCAACTGGGGTGAGGGAGAATTAAAGAAGGCCTCCCAGGGAAGGTAAAATCTAGGTGTAAGACCTGGAAGATAGATGGG----ATGGGGACAGGCCATGCGGAGTCCTGGAAGCAAGAGAGCGTGGTCCGCTCTAGAACTGCAAGTTCCATGTGGCTGGAGGCTGGCAGAGGCAGGGTGCTAGGAAGGAATAAGGCTGGCAGGGAGACCAGGGCCTGGGGAAGCCAAGAGAGCTGGGACTCGAT-----CCTGAAGGCAGTTGTGGGCATGGAGGTCGCTGCACAGCAGGGACACAGTCAGGTTGGCATTGGAGAAGGAG-------GACCCTGGCTGCAGGCAGGTGGAGGGAGGGTCAGGGCAGGTTCTGGTGAGGGAGAGGGGACGATGGAGTGCCAGCCAGGT-TCAGGAAGTGAAACCGAtggggtgtgagggagaaggaggagccaaggacgattttctgttcttggcctg-ggcagccaggtaagtgacagcgtgccctaggggatgtggaaggaggagtggactgggagagaaaggtaagaaatcaggtcagtt-GGGTCACAGCAAACCAATGACCCAGCAGGATCTTGAACATCAGACTGGAGTCTTTGATTTGAACGTGAACGGCA-CCGAGAACACAGCTGTGCTAAGGCC-----------------CCCAAAGAGAGAGTCACCGG s mm3.chr5 119556706 597 + 149719773 GCGGTTAA---------TTTACCTCTC----------------CGGC-----------AGTACAGGGGTACAGTGA--ATTGACACTGTGTGA------------------TGGGAGCTAATGATGGCAGGGACAGCTGGGGAAGGGAAATCTCGGTCCAAGACCTGGATGATAGATAGGTACAATTG----------------GCCCCAGACCTGAGCCAGTGAGGTGTGCTTTTGTAACACCAG-----AGACCTAGGAGGGGGGCAAAGACAGGC---------GGGACAAA----------------------GAGGAGACCCAGAGAGCCAGGCCACAATTATTCTCTGAGAGTATGGATGGGGCAGTGGG-------AAAGTCAGGACTCAGCCTGGCTGGCAACGACAAAGGGGTGGAATAGGTCCAGGCCAGAGGCA---------ACGGCCAGAGAAGGGGCATGTGAG---------------------CAGGTAGTTGTTAGGTGATGTACAGAGCAGGGAGGAAGGGAGGGAGGGGATCCAGCCA-GATGATCAGTTCTCAGGTTGCGGTGGC------AGTGATGCTGAGCCCCCGA----GCCCCAGGAGGGGCAGATTTGGTGGTAAAG--------TGAGCTGAGTTTGGGTCACAGCCTACTACTGAGATGGAGGCAGT-------TCAGCCAGGGTTGTGTACTTTGAAC----ACAGCA-------------GGCTGCTGAGACCA----------------CCAGAAGTGGGGACCACCGG s rn2.chr12 10236976 618 - 46874691 GTGGTTAA---------TTTACTTGTTAAATATTTATGGAGCTCGGT------------GTACAGGAGTACAGTGA--ATTGATACTGTGTGA------------------TGGCTGCTAATGATGGCAGGGACAGCTGGGGAAGGGACATCTAGGTCCAAGACCTGGATGATAAG--------ATTG----------------GTCCCAGACTTCAGCCAGTGACATGTGCTTTCGAAACACAGG-----CGATCCTGGAGCAGG-CAAAGGCAGGG---------AGGACAAA----------------------GAGGAGACCCAGAGAGTTAGGCCACAATTCTTCTCTAAGAGTGTCGGTGGGACAGAGGG-------AAAGACAGAACCTGGCCTAGCTGGCACCGACAAGGGGGTGGAATAGGTCCAGGCCAGAGGCA---------ACGGCCAAAGAAAGGGCATCTGAG---------------------CAGGTAGTTGTTAGGTGAAGTACAGAGCAGGG----ATAGTGGGAGGGGATCCAGCGG-GATCATCAGTTCTCGGGGTGCAGTGGC------AATGATGCCGAG-------------CCTGGGAGAAGCACATTTGGTGGTACAG--------TGAGCTGAGTTAGGGTCACGGCACACTACTGAGATGGAGGCAAT-------TCAGACTGGGCTGTATAC-TGGAAC----AAAGCAGCCCGGAACATTGGGCAGCCGAGACCACCGGAAGCGGGGACTGCCGGAAGTGGGGACCACCGG a score=34902.000000 s hg15.chr12_random 76175 358 + 590431 ATCAGTCTGTCCATGAATGCTAGGAGTCTGGAGTGCATGGTGAAGCTGCTGAGGCCCACCACATTCTCTTGATCAACCCTATCTTT------GCCCTTTTCTGGAGCTTTTCTGCTTCTGGCATGACAGACTTTTGACTGAAAACCAGAAATGTTTT-CTGCTCTGCTGAGTGCC-CTAGATATTTTCATCCCAAATTACTAAAAGTTGCTTCTTCACCAGTTGCAAGGTTTCAGAAAGAAAAATT-TCCTCTTCTGTA-AAATATAAATGCGGTTTTTGCAAAGTACCTTGAGGTTCCCACACTACTGAGAAATAGGACAGGCTGCTCTTGTCTGCCAGGTAAGGTGTTTCCAAAGGAAAGTATGGg s mm3.chr5 119558752 327 + 149719773 ----ATCTTTCTG-GGTCAGTGAGAGGCTGCAA----TGATGGAGCAATTGAGACACATGGCttttttttttttttttttttcttGTGATCAACCCTTTTCTGGAACTTTCCTGCTTCCGGCATGACAG--TCTTGACTTAAAACCAGAATCCTTTTTCTGCTCTGCCAGGTACCCACAAGTCTTTCCATCCC-AGTTACT-TGAGTCACTTCTTGACTGGTCAGAGAGTTTCAGAGAGAAAACTT-GCCTCTCCCGCATTAAT----ATGTGGTTTTGGTAGTGAGCCCCCA-----CCCCACCCCCA-------GCCTCAGTGGCTTCTGTCTGCAGGGTGAGGTATTTCC-----------TGGG s rn2.chr12 10238690 306 - 46874691 ---CGTCTTTCTA-GGGCAATGAGAGGCGGGGG----TGATGGAGAAATTAAGGTACATGGCTTTTTTTTTT----------CTTGTGGTCAATCTTTTTCTGGAACTTTCCTGCTTCCGGCATGACAG--TCTTGACTTAAAACCAGAATCCTTTT-CTGCTCTGCCGGGTACC-ACAAGTCTTTCCATCCC-AGTTACT-TGAGTCACTTCTTGACTGGTCACAGAGTTTCAGAGAGAAAACTTGGCCTCTCCCGCG-TACT----ATGTGGTTTTGGTAGAGAGC---------------CCTCCG-------GCCTCAGTGGCTTCAGCCTGCAGGGTGAAGTGTTTCC-----------TGGG a score=21230.000000 s hg15.chr12_random 77171 509 + 590431 CCTGGCCAGCCCTGGGAGTCCAGAGATGTTTGGTCCGGCCGAGATGAGCCCAGCATGGGAGATGAGGTACCAGTGCCCTCAGCCAACAGGTGCATGATGGGCTTCTGCTCAAGGTCAGGTGTCATACAAGACTCAGGGgacacagaccctgccttcatgtgaggtaaatgctaggagggataaaaatatgtggctgcacataacagtttctagttagaaactaggatgagggctctcgaaggaaaagt--gggaggaga-ggt-------tataaatgggaggggaa-ctgatt---taggttttaggggtgagggagggcctctttgaggaactgacattttagctgacatttcaagcataag--caagagtaagcgacgtcggattggggagaagagtattccaggttgagggaacagcctgtgtgatggctcagtgtgga-------------gcatcagagggacagaagggtggctggagtgtggcgaggaggctgtggggaaggagagatgccagTTCCTGGAGGGCCATGC s mm3.chr5 119559086 366 + 149719773 CCTGGTTGGCCTGGG------------------------------------AGCATGGGGAAT---------------------------------------------------------------------TCAGGGCACACAGCTCGTTTCTTGGGGTGC-GTACATACT--GAGGAGTAAGA---------------------------GTTAGGTAACGTGAGGAGGGCTCT--GAGGAAGAGGAAAGGAAGAAA-GGCGAGGATGTGGAACTGAGAGAGGAATCTGGCT---TTGGTTCGGGGTCCCAGGAAGGAGCCCTCTGAGGAAGTGAC-TGGCATCTGAGTCTTCACGCGTGGGG-AAGAAAGAACCCGAGTCTGAGAGAGGCTAGGGGC-TGCCAGGCTGAAG----------------GGCTTTGAGTGGA-----------AGGCTCCAGGGGTAGAGGTGAGGGGGCAGAGATGAGGGGGTGGGCTG-CCGGAAGAGGAGGGGCTGAGCCTCCCAGGGCCCTGC s rn2.chr12 10239002 372 - 46874691 CATGGCTGGTCTGGG------------------------------------AGGAGGGGGAA----------------------------------------------------------------------TCAGGGTACACAGTCCCTGACTTGTGGTGT-TTACGTACT--GAGGAGTAATAA-----------------------ACCGTTAGGTAATGTGAGGAGGGCTCT--GAGGAAGACTAAAGGAGGAAAGGGCCAGGCTGTGGAACTGGGAGAGGAATCTGGCTCTGCTGGTTCAGGGT-CCAGGAAGGAGCACTCTGACGAAGTGACATGGCAGTTGAGTCTTCATGCGTGGGGTTAGAAAGAACCCAAGTCAGAGGGCGGCTAGGAGC-GGCCAGGCTGAAG----------------GGCCTTGAGTGGGTGGTGTGGGGCTGGCTCCAGGGGCAGAGGTGAGGGGGC--------------GGGCTGCCCGGAAGCAGAGGGGCTGGGCCTCCCAGGGCCCTGC a score=22124.000000 s hg15.chr12_random 96557 218 + 590431 tttgtcgtttagtatttgtgtgcctccctatatagactaagtttaatgagggcaggcaggacctgcctgtcttactcaactctgtgttctctgcctagcacatagttggcactcagaaactctttgctgaattgatgaCagatcacccagcgggcaagggaaaccattgagg-caggatttacacccaggcctctttgatg-caatgcctgtgttcttcc s mm3.chr5 119541309 205 + 149719773 TCTGTCATTTGGTCCTTTTATG--TCCTTTCACAGAGCAGTCTTGATGCGGGTCCGTGGTACCCACCAGCCTCTGCTGGTTTAGTGCCC--------GCACTTAGACAACACTCAGAGATAATTTGTTGAATGAATATAAGATCACCCAGCTGGCACGGGCAG-GATGGAGG-AAGGATTGAACTCCAGGCCTCTTTGATGGCAA---CTGCTGTCTTTC s rn2.chr12 10221061 205 - 46874691 TATG-CATTTAGTCCTCTTATG--TCCCTTCACAGAGCAGGCTTGATGTGG-CCCATGGTACCCACCAGCCTCTGCCGGTTTAGTGACT--------GCAATTAGGTGATACTCTGAGACTGGTTGTTGAATGGCTATAAGATCACCCAGCTAGGACGGGCAG-GATGGAGGAAAGAATTGAACTCCAGGCCTCTTTGATGTCAAT--CTGCTGTCTCTC a score=3906.000000 s hg15.chr12_random 96778 77 + 590431 tCTTCTGTGTGACTCTGAACTGTGAGGCAGAAGGCTGAGCCGAGTGCCAGAGAAGAGAG--------TTGGAGGTGACCGTGCCC--------- s mm3.chr5 119541517 79 + 149719773 CTTTCCAGATCATTCTGAGCAACCAAGCAGAAGTC-------AGCCTCAGGGCACGGGG--------TTGGACGTCATCAGCCCAAGTGTCGCc s rn2.chr12 10221381 87 - 46874691 cTTTCCATACCATTCTAAGCACCAAAGCAGAAGTC-------AGCCTCAGGACACGGGGGTCAGAGTTTAGTTGTCATTGTCCCACATATCCGT a score=30072.000000 s hg15.chr12_random 96855 431 + 590431 TTTTCACATAGCTGCGTCATCAGGCATCGGTGCCCAGGCCTTGTGCAGATCCCGTCGT-------------------------GTGGCCGTCACTGCTGTAGATAAATCTTATCTGCTGGGAAAGGCACCTCTGGGCCTAAACAACAGATGTCACTCTAAGAAATCCCAGCAGAACCCCCACCCTGTCTCTGGCTGAGAACTCATCTACTTTTCTCTCCCTCTGTCCATTTTCTCACACTCTACCAGAGCCAGGACAGGGCTTTTGCCCTAGGAAGGGAAGTGGTCAACTGTAGCCG---TTGATAACTGCCTTGGAGGAACCAAAACCAGCAGAGGCAGCCCTCTCTCT-TCCCGCTGGGGAAAGCCAGAGCTGGCCACTGCCCTGGCCCGGCCCCAGCTGTCCTGGAGCCCAGGGATGGCCCAGTCCCCCAGGGCTGTACTCAGATCTTCCTCAAAAT s mm3.chr5 119541667 366 + 149719773 TAGCCACACTGCAGCATCA-----CACAGGTCCCCAAGCCTCATTCAGACATGGTCAACTACCTACCTACATACATACACTCAGGGGCTGTCACAGATGGTAGTGAATCACAT--------GGAGG------TAGGTCCAGGTAACTGATGTGACTCTGGGAACTCCAAA------------CCCATCCCTGGCTGAAACCTCACCCCCTTCTTGCTTCCTT--TCCCTCTTCTCACGCACTCCTGGG----------------TGCTCTGGGAAGGGAAGTGGTCGGCTGCAACCA--CGAGATA------CTGGAGACACCAGAGCCTTTGAAGGTGGCCTTCTCTCCCTGCTGGTGGAGGAGGGAAGA------------------------------------AAGCTCAAGCA-GAAATAGCCTCCAGGCCCTGGGCTTAGATCTTACTTGATCT s rn2.chr12 10221547 329 - 46874691 TAGCCACACTTCAGCATCA-----CACAGGTCCCCAAGGCTCATACGGACATGGTCAT-------------------------GGGGCTGTCACAGATGGTAGTGAGTCACAT--------GGAGG------TAGGCCCAGGCAACCAATGTAACTCGGGGAATTCCAAA------------CCTATCCCTGGCCAAAACCTCATCTCCTCT---CTTCCTT--CTCCTCTTCTCACGTGCTCCTGTG----------------TGCTTTAGGAAGGGAAGTGGTTGA-TGTAGCCAGAAGAGACA------CTGGAGACACCAGAGCCCTTGAAGGCAGCCTTCTCTCTCTGCTGGGGGAGAGGGACAGA------------------------------------AAGCTCAAGTA-GAAATAGCCTCCTGGCCCTGGGCTT----------TGATCT a score=9593.000000 s hg15.chr12_random 97593 249 + 590431 GCTCCATGAACATCAAAAG--------GCAGGAC------ACCCAGAAAAT---------TCAAGCAAGCTGGGCTCACTGCTTGGTAAGAAATGCGGAGGAC----CGGGGGTGG------------------------------GGCAAGGACTGCCTTGTGTAAGAGAACTGCTTTGGTATTGCCCAAACCGGAACAAGTCCTTCATCTAACGCAgttccta---atctttttgtaatctggggcctttgacatctggggaagcttctggacctcttccaagagtaatgtttt----tcaatgcataaaa s mm3.chr5 119542033 218 + 149719773 GTTCTGTGAGCATCAGGAGG-------GCAGGACCACCATACCTGGACAGTGATGGATCCTCACACAA-------------------CAGAAATGTGAAGGACGTGGTGGGGGTGGGTTGAGGGGG--------------------GAAAGGGACTTCCTCATGCTTGAGAA----------------CAAACCAGCAAATATCC--AACC--ACACAACTCTGAAGCGTC--TCTGCAAACTGGGG---------------------------CTTCTTTTCAGAGCAATGTTTTTCTCTCAGTGTATACAA s rn2.chr12 10221876 248 - 46874691 GTTGTGTGAGCGTCAGGAGGAGGGAGGGCAGGACCGCTGCATCTGGACAGTGGTGGATTTTCACATGAGTAG------------GGGCAGAAATG--AAGGATGGGGTGGGGATGCGATGCAGGGGTGTGTGGGGGTGGGCAGCCTGACAGGGACTTCCTCATACTTGAGAA----------------CAAACCAGCAAATGTC---AACC--ACAGAACTCCAAAG-GTCCTTTTGCAAACTCCGG---------------------------CTTCTTTTCAGAGCAACATTTTTCTTTCCCTGTG--CAA a score=19555.000000 s hg15.chr12_random 99878 270 + 590431 GGAAGGTAGCCAGGGGATCAAGCCAGGCCAGGGTTTGAGCCTTGCCTTGCCTTAGCAGGGTCTGTTGAGGTCACCACCTGTC-TGCACTAAGGGTCTAACTACAGGCAAGAC------CAGATGTTAAGACAGAGGGCTGCAACTTCCAGGTGTGCAACTAGGGGACGGGGTACTTGTTCCCTTTTCC----CTTCCTCAACCAGAGGGGAGTGAACACAGAGGAGGGGCTGTTGGGAGCAGTCCCCACATCCTCTCCACTCTGTCTAGCTGGCCCTGGGG s mm3.chr5 119542893 216 + 149719773 GGGAGTCAGCCAGAG---------AGTCCAGAGCTTGGGTCTT---------------GGTA-GCTGAAGCCATATCTTGTCTTATACT--GTTTGTAACTCATGGCAGGATGTATTGCTGATGTCA--------GCCCACAGCTTTGAGGTGGTTCATTAGATGGAGGGACTCCTGTTCCTTCTCCCTGGCCTTCCTCACCC-------------TACAGACATGAGG-----AGGAACTGTC------------TCACCCTGTCTAGCTGACCCCGAAg s rn2.chr12 10222753 226 - 46874691 GAAAGTCAGCCAGAG---------AGTCCAGA-CTTGAGGATT---------------AGTC-GCCGAAGCCACAGCTTGTCTTACGCT--GTTTGTAACTCATGGTAGGATGTATTGCCAATGTCA--------GCCCACAGCTTTGAAGTGGTTCATTAGATTCGGGGACTCTTGTTCCTTCTCCCTGGTTTTCCTCACCC-------------TACAGACAGGAGG-----AGGAACTGTCTCCAT-TCTTTTTCACCCTGTCCAGCTGCCCCTGAGA a score=10670.000000 s hg15.chr12_random 100148 119 + 590431 GAGGAGGAGAATTTTTAATAAAATATAAGGAAGTTGAAGTTGAAAATGGACCAGACTATGCCTTAGAAACTGGCATGGGGCTGTTGTAATAATACATGACTGAGAAGTCAGGAGATCTG s mm3.chr5 119543287 112 + 149719773 TGAGAGATAAGTTTTGGATGAAACACAAGAAGGCTGAAGTTCAGGATGGAGCAGGCCATACCTTAGGAACTTTCAGGAGGCTGTTATATCACAACATTTCTGAGGAGTC-------CTG s rn2.chr12 10223188 97 - 46874691 cGAGAGATAAGTTTCTGATGAAGCACAAGAAGGCTCAAGTTCAAAAGGGAGC-------ACCTGA--------CACGAGGCAGTCATTTCAAAGCATGAGTTAGGAGTC-------CTG a score=2045.000000 s hg15.chr12_random 101187 66 + 590431 AGCTGCCCAGCAGAATTGGGGAAAGCCGAGTCAGTTGAAGC----AGACAATACCCCtatgggaggcaga s mm3.chr5 119543413 70 + 149719773 AGCTTGCCACCAGCATGGAGGACAGGGGAGCTGGTAGAAGCCAGTGGATCAGAGACCAATGGGAGGCAGA a score=38136.000000 s hg15.chr12_random 102983 479 + 590431 gggtcacacagc-----caaaggag----gcagagccagaactcacaaccaggtctgtgt---cccctaagtcctcggatgcatcgtccc--tgccccgctgcc-ctcccgGGAGATTGTAGGAGAGAAGCAGGGG------CAGAGGCAGTGCTGGATGTCCCGGGAGAAGGCTGCAATG-----AGCAGGCCCAGCCATCCCTGAAGGAGGAGCCCCGGGGAAGCAAACTCTTCCCTAGAAACACTTTAAAAGCACCCACCTGTTGGAGACAGAGATGCTGAGGAACAAGAGT------------GATTGGGGCCAGGGTAAACGCCAAGACAGAG----------AGGGGAGAGCAGTTCCTCAGTGGAACTCCCTCCAACATTGCCCCCACCACTTTTACCAG----TGCTGGGTGTGGGGGATCTTGC-----AGGCTCAGCTTCgtgacttggcctgtctctgcctcagtttccgcatctgtcccatgaggttaagcat-gtacctacctcgcaggattgctgagaagatg s mm3.chr5 119544824 491 + 149719773 GAGCCAGCCAGCCACTGCAAAGGAGTGCTGCA-------AACT-ACCAGCAGGTGAGTGTGAAGCCCTAAGCCCTG---TTTTCCATCCCAGAGCCCTACAGCCACCCCAGGGAGACAGCAGGAGGGAAGGAGA--------TACAGCTA-------GCACCACAAGAGCAGACCCCCAAGGAGTCAGCACACTGGTGCACCCTAGCAAGAAGAAACCCAATTTAGTGGAGCCTT--CTTGAAATGATTCGAA--GCCCTATCTGTTGGGTTCAGGAGTGCCAAGGAACAAGAATGGTGGGTGGGTGGGTTGGGGCCTGGTTATACTGTAAGACCGAGAAGCAACAGCAACAGCGTGCATTTC----------TGCTCTTCTGAA--GCCCCCACCACTTAC-CCAGCACCTACTGCCTGCGAGTACCTGATTCTACATGCCTTAGAGGTGGGACACTGCC--TCTGTGTCTCTGTATCCTTCTCTGCCCTATGGCATTCAGAATGGCA-CTACCTCCCAGGAATGCTGAGGTGATG s rn2.chr12 10224428 483 - 46874691 ----GAGCCAGCCGCTCCAAAGGAG----ACAGAAGTAGAACT-ACTAGCAGGTGGGTGTGAAGCCTTAAGCCCTC---TTCCCCATCCCAGGGCCTCACAGCTACCCCAGGGAGACAGCAGGAGGGAGAGTGAGATATGTGTGCAAGTAGTA-TGGGCATCCCAAGAGC--ACCCCAAAGGAGCCAGCACATCGAGGCACCCTAGCAAGAAGAAACCCAATTTAGCAGAGCCTT--CTGGAAACGATTTGAA--CCCCTGTCTGTTGGGTTCAGAGGTGCCAAGGAACAAGAAT----GGGGGCTGGGTTGGGGCCAGGTTATACTGTAAGACTGAG----------ACCAGCAAGCATTTC----------TGCCCTACAGAA--GCCCCCACC-CTTAC-CCAGCACCTACTGCTGGTGTGCGCCCAGCT-----TGTCTTAGCTGTGGGACTCTGCc--tctgtgtctctgtgtccttctctgccctgtggcattccaaatggcacctacctcccaggagtgctgtgatgatt a score=33346.000000 s hg15.chr12_random 103701 348 + 590431 GACTCCCCAGAGGGAAAGGCTGATAAGGGCAGGGTTTTGAAAATCTCTGGGCTGAGGCTTGCACAAGGTCCAGAGCTGCTCTGTGGCCC-CTGCCCTCCCCGACACAGGTTTAGCAAGAAGGAGAAAGCCAGAGT-------------GTTCTTGTCCCCAGacttgatcctttgctagtcattggggcttgggccctgggagctgtcatccaccaccccgctcctcgtcccttccccacagtctaggctagcgacaagttctaacccaaagcatatcctgaatccggccacccctccacccc--ctacttccaccctgagaccaggccgccagcatctcttg-ccgcctcatca------cgctggaccc s mm3.chr5 119545483 321 + 149719773 GACTCCCCTGGCTTCAAGGCTGGTCAAGGCAGGGCTTTGAAAATCTCTAGGCTAGGTCTTACCCAA-TTCCAGAGCTGCTGGGCAGCCCACAACCTTCCCGTGGCCATGTTTTGCAAGAAGGAAGAAGCCCGGAC--------------TTCTTG--TCCAGGCTTTCCCGCCTGT-------------------------AGC--GCATGCCTCCATCTTTTTTTCCCAACTCCCACTCCATCTAGGCCAGTCACAAGTTCTGGCCTACA-CAGATCTCCAGTCTGGATGCTGTGTCACCATGACTACACCCA-----AGTCCAGACCTCCATCCTCTTTGGCCCTCCCCATCATGTCCCTGCTATAACt s rn2.chr12 10225152 311 - 46874691 GACTCTCCTGACAGAAAGGCTGGTCAAGGCAGGGTTTTGAAAATCTGTAGGCTAGGTCTTACCCAA-TTCCAGAGCTGCTGGGCAGCCCACAGCCCTTCCTTGGCCATGTTTAGCAAGAAGGAAGAAGCCCAGACTGTGTCCGCAGACTTCCTTG--CCCAGGCTTTCCCGCCTGT-------------------------AGC----------------TTCCTTCCCAACTCCCACTCCATCTAGGCCAGTCACAAGTTCTGGCCTACA-CAGATCTCCAGTCTGGATGCTGTGTCACCATGACTACTAC---------------CCTCCATCCTCCTTGACCCTCCCCATCATGTCCTTGCTGTGACT a score=42954.000000 s hg15.chr12_random 104247 781 + 590431 caatctgtgacatactcccttgtaattcagggcacaccataaatgtcgagttgtccctgaccaccccacttaaggagac-cccgcctgctc-----cctggccccttactctggctgg--ctggcttcccagtgcttagctggggggggggggtgtggtctgtctt-------------------------gtatatttccttgcttccttgtttgtctccccaggtaacatgtcagtctaccaggatcgtgatcttgccctttcctcttcaccttggatttcccagaacctgggaaatcagtgcctggcacctag-------gaatggctcaGATAGTTTT-GTACAGTTGCAGGCAAT---GTGTCAGCCATCAGCCTATTTTTC--TTCTCACTGCTTGACAGCATTTTTTCTCCCGTTTCTACATAGACTTCAGAATTATCCCTCCCAAGAGCC--CACTGCCTTCCTCAGCTTTTCCC--TAAAGTAGGGCTTGGGGGTTGAGGGCCACTTCCAGGTTTTAGCCATACTATTCAACTTAGCTATAAATATCATTGTCCATATTGTGCATGTTTTTGGCTATCAAATGGCTTCTTGGAGATACAGTTTCCTAACCAAGGTGTGCAAGTCAAGGGTGGGATCATTTTGGAAGCACTTACCTCTTG-----TGACCAGGTAGCTATTTAGAAAAATCATCCCCAGGAATGTGTGCACATTTCTCTGCAGCTCTGCAAGCATTGGTTTTTATCCTTTTTATTTGTTTTGGCTAGTTTAATGGAGAAGGGCATGGTAGTTTTAAAGTTTCTGTTGCTTGAATTGCTGAAGCTGAGT s mm3.chr5 119546485 673 + 149719773 CACTCTGT---------CCTCTTAAGT------------------TCTTGCTGTTAAAGAACCTTCCTCTTCCTGGGACACTTGTCCCCACGAGAGCCTGGCCACTCAACCTGCAAGAGCCTGGCTTCCCA---------------------TCTTGCTCTGTTCT-------------------------GAGTGTGGCCTCAGCCC--------TGTCCTTGAGGTGTTTGTCA--------------------TCTCCTGTCCCCTTCCCTTTTATTCTCCCTGAACCCAGC----CAGCGCAGGG--TCTAGCACGGATGAAAGGCACAGGAGGCTCTAGCTCTGCTGCTTGCAAATGAGCGCAGGCTTGGGTCAGACTTATCAGTTCTGCTTGCTCAACAGTCTGCTTTCT-CCACCACTGCGCAGACCCTAGCA-TGTCCTTCCTCCCTGCTTTCGTGGCCT---TCAGCTTCTCCCGTTCAGGTA----TTGGGAGGGGGGAG---------AGGGTTGGCAACAGCATCC-ACTGTACTACACACACTGCTGCCCACGCAGT-------------TGCTAGGGAGCT--CTGGAAA---GGTTTCTGGAATGAAGTGGTCAGGTCTAGGATGTAGCCG-TTTGGAAGCCCCTATCACTAGATGTCTGACTAGGTTGCATCT-------CTCTAGCC----AATGTGAG---GCTTCTCCATGGCCACCCAGGCAGTGGGCTTCACCACTTTTATTTGTTTGGGCTAGTTTATTAG-GGAGGACTTGAGAG-TTGAAACCCTCTGT--CTTCAGTTGGTGAAGTCAATG s rn2.chr12 10225976 691 - 46874691 TGCTCTGT---------CCTCTTAAGT------------------TCTTGCAGTCAAAGGATCTTCCTCTTCCTGGGACACTCGTCCCCACGAGAGCCTGGCCACTCGACCTGCAAGAGCCTGGCTTCCCA---------------------TCTTGCTCTGTCCTGCTTTCCCCCACCAGGCAGGTGGCAGAGTGTGGCCTCAGCCCTGTGTGT-TGTCCTTGTGGTGTTTGCCA--------------------TCTCCTGGCCTCTTCCTCTTTGCTGCCCCCAAGCCCAGCA---CAGTGCTGGG--CATAG-------GGGAGGCTCAGATGACACTGGCTCTACTGCTTGCAAA-GTGAGCAGGCTTGGTTTGCACTTATC-GCTCTGGTTGCTCAACGGTCTGCTTTCT-ACATCTCTGCACAGACCCAAGCA-TGCCCTTCCTCCTGACTTGCATGGCCT---TCAGCTTCTCCCAGTGAGGTA----TTGGG-------------------GGATTGGCAACAGCGTCT-ACTGGGCC---CACACTGCTGCCCACACACT-------------TGCTAGGGAGCT--CTGGGGA---GGTTTCCGGAATGAATTGCTCAGGTCTAGGATGTAGCCA-TTCAGAAGCCCCTATCGCTAGATGTCTGAGTAGATCACATCTACTAGCCATCTAGCC----AATGTGGG---ATTTCTCCAGAGCCATCCAGGCAGTGGGCTTTACCATTTTTATTTGTTTGGGCTAGATTATTGG-GGAAGACATGAGAG-TCGAAACCCTCTGT--CCTCTGTTGGTGAAGCCAATG a score=98.000000 s hg15.chr12_random 105028 34 + 590431 GTTCCTCTGCGTGTGT-------GCTAGTTCTAGCTCCTGT s mm3.chr5 119547158 41 + 149719773 GATtttgtttgtttgtttggttggttggttttttatttTGt a score=51449.000000 s hg15.chr12_random 105972 1011 + 590431 AAAAAGGGtgtg--cagggtt----atttatg----gaagcg-ctggggtgggaggagattggaaacaaccgtaaatgtccatca------ctagtaggattaaacacattcctacaggg-gactcatgtgcagccatgacaaggcgtgcacttcatacaGGACACACTGGCATAGAACCACCTCTGAGATACtgtgttagtcttctgtggctgctgtaacaaatggccacaagcttggcagcttaagataacacacatttattatgctacagttctggaagtcaaaagtccacaatcggtctcagtgggctcgagtcaaggtatgggcagggctgtgttgctgctgcaggctctgggggagaatctgtttgcttgc---cttcccaacttctagaggggcccacatgccttggattgaggccccatcctccatctttaaagcactgaatcttcagatctttctgactccagcctctgcttctgtcct-cacaatctcttctttctcctgcctccacttatcaaa--gacccctctgatgacattgggtccactaggataatccaaaatcattccctccatcttgagagctgcaacttaatcatgtctgcaaaatcctttttgctatgtaaagtaatatac----aagttcaaggat-tagggtatgtgcatctttgaaggggagcattattttgcctaccacaCCCTGAAGGGAAATAA----GGTTCACAG---CAGTATGTGGGTTCACATTTGTTTACAA-AAAAAATAAAA-------TAAAAG--------GTTGGGGGAG--------------------------AGTATCTACTCATGTGCTTGTGAGGGCATAGAATACTCC-----AGAAGGCGA--CGTAGGAAACTGGTCAGAGGGTCAGAGCGACCACTTCTGGGAAGGATAATGGGTAGAGGGGAGACT--GACTTGTCATAGAATATCTTTTTGTATAATTTAAACTTTTTACTACATGCATAGATCACCTATGTTAAAAATAACGTTT--TAAAGTAACACCTACTCATTGTAAAAGTTCACGCCTCCCAGAAGCAGAG---AAGGAAAGCCCCAC------- s mm3.chr5 119548281 928 + 149719773 GGTACAAACGCA--CCGGATTCAAGGTGCATGCACAGTGGGGTTTGGGGTTGGAAGGGGTGGGGAAC-----------CCCATTGTGCTCACCAGT-AGCCTCACTACATCCCCACAGGGAGAGTACTGGGCA-TCACAGCAAG----GACCTCCACCTAGAGCTCACTGCCACAGTGTGGTCCCTTGGGGATGGCGAGTGTCCCCGGT-----TTATAGCAGG-G-----ACatttggtggttttaaaaaagtcccaactgtgatctc-------------acagatgcctaaaagcgtcttccaatggtgcaaatggagaggccctcaaagctgcctttcctccagaggctctgggtggg-----gtctgcggacc--cttaccagttctta--ggggtgcacatagcatgag--------ctagcctcc------------cagcatcttcatg-----------------cctgcttctctttgctgcagccccttcactctcgcccctccgctcctcggacagaccctccgggttccagtgtgtctacctgggccgcct----cctgtcacacaatcttg--------aatttagtcac-tgtgca-------------cacataatgtgacaaactcctgggttcaaggggaaagggcctggGTGGTCT---AGGTGACTGT------------GCCACCCCAAGAGGAAATCAGGCTGGTTCTGAGAGATGGTGTGT-CACTCCCATTTGTATAGGAGAAAAAGTGAAAAAGTACATGCAGGCTTTCCATGTGCACGGAGGCCTTCtgtgtgtgtgtgtg------tgtgtgtgtgtgtgtgtgtgtgtgtgtgCAGGCCTGTCCTGTGAAGAGGGAAAACCACAGAAGGCTGTGTGGAGG--------AGACACTTCTGGGAAGG-----GAGCGTAAGGAAGATGGAGACTTCCCAGCAGACATCTTTCTGC-----TTAAA-GTTTTACTCTGTGCCTCTGACAGCTATGTTAAAAATAATTTTG--AAAAATCACACATAGTCATT-----------------CCAGAACCAAAGAGAAAGAAGAGACCCAC------- s rn2.chr12 10227260 946 - 46874691 gagacacacacaGGCAGGATGCTAGGTGCGTG----GTGGGGTCTGGGATAGGAAGGGATGGGAAAC-----------CCCATCA------------AGCCTCACTACAGTCCCACGGGGGGAGTACTGAGCA-TCGTAGTAAG----CACCTCTGCTTAGAGCTCACGGCCACAGCGAGGTCCCTTGGGGATGGTGAGTGTCACCGGT-----TTGTAGCAGG-Gactatacattttgtggttataaaaaagccccagctatggtctcttggttctgtggatcagaagcctaaaagcattttcc-atggtgcagatggagaggcgtacaaggctgcctttcttccagaggctcCGCGTGGG-------TTGAGGACCAACCCACCAGTTCTTA---GTGTGCACATAGCATGAA--------CTAGCCTCC------------GGGCATCT----------------------CCTGCT---------GGCAGCCCCTTCACTCTCACCCCTTGGCTTCCCAGACGGACCCTCCTGGTTACA--GTGTCTACCTGGACCGCCT----CCTGTCACACAATCTTG--------AATTTAGTCAC-CGGGCA-------------CACATAAAGTGACCAACTCCTAGGTTCGAGGGGAAATGGCCTGGGTGCTCT---GGGAGACTGTCCGTCTACCTACCCCAACCCAGGAGGAAATAAGTGTGGTTCTGAGAGACAGCAAGT-CGCTCACATTTGTGTAAGA-AAAAAGTGAGAGTGTATGCACAGGCCTTCCGTGTTCGTGCAGGCCTTCCGTGAACATGCATGGCCTTTCGTGTTCGTGCAGGCCCTTATGCAGGCCCAGGCCTTTCCTGTGAAGAGGGAAAACCACAGAAGGCTTTGTGGAGT--------CAATGCTTCTGGGAATG-----GAGCACAGGGTAGATGGAGATTTACCAGCATTCATCTTTCTGCATAGTTTAGA-GTTTTACTATAGGCCTCTGTCACCTATGTTAAAAATACTTTTGAAAAAAATCACACACAGTCATT-----------------CCAGAACCAAAGAGAAAGAAGAGACTCACTAATGCC a score=5935.000000 s hg15.chr12_random 107606 90 + 590431 gaatcatacaatatgtgacattttatgtctggcttttttcacttagcatggtatctttgaggttcatctacattgtaataagtatcaata s mm3.chr5 119550341 90 + 149719773 TCAGCATGCAACATGCAAGGTGCTGAATCTAGCTGTCTTCCCGTTGTAGAGCGTTCTCAGGGCGTCTCCACTCTGTAGCAGCTGCTAGTG s rn2.chr12 10229152 82 - 46874691 TCAGCACACAGT-------GTGCTGAATCTGGCTGTTTTCCCGTTGTATAGTGTAGCCAGGGCTTCTCCACTCTGTAGCTGCTGCTATG- a score=29048.000000 s hg15.chr12_random 108034 474 + 590431 ttttatggccaaataacgttccattgtgtggacagacccattttgttgatccattcatccattgatggacaagcgggtcgtttccaccttttggcttttaagaataatg--------ctgtgaaagcctatgaac---tttcgtgtacaaataagtatttgtttgagtccctgtttcagttcatttggctctatatccaggaTGTATGCCCTCCTACATATACTTTGTACTTTACACTAATTTCGGGCACAGTTAAAACTAAACTAACTTAAAACTAATTTGTAAGAAAGGATTACAGAGCACAT-ACCAAGGCAGATGGCAGCAAGATGATAGATCTGGACAAATGTCTTTT----TATTTTT-----CAGATCCAGAGGCAACAGGGACATGGCCACCTGGGACGAAAAGGTA-ATGGATTCTGTGGTCTTGCAGCATTAGAGGATATCCCAGCCTTGAGAGGATAATTCTGTTTGGTGTTTCAAACAGGAGAG s mm3.chr5 119550431 409 + 149719773 TTTAAAGGCTGTATGGTATTCTGCAGTGT-----GACTC--------TATCCGTTTCTCTGTGGATG------TTGGTTGTTTCCACTCACTGGCCACGGTGACTACTGTATGCTTCTCACAAATGCTCGCAAGTGAATCCAGCACTCAAGCAGGCATT--CCTGAG----TATTGCCAATCTCTCGGCTCTCTTCCCAGA--CCATCCCTTCTAACTCATTTTGTGGCCT------TATTTTCAGGTACTGCTCAAACGGACC----------------TTCGAGGACAGATTGCGGAGCGTCT-ACTCGA------GACAGCAGGGTGACAAGTCTG---------CCTCC--AGTTCTCTCACTGTTGGATCTTGAGACAACAGGAAAATGACTTCCCATGACCCAAAGGTATATAGTGACTGGGG-------------------GTTCCCACCGAGAGAGGAGGATCTTG-TGGGTGTTTCTTTCAGGAGAG s rn2.chr12 10229234 413 - 46874691 TTTAAAGGCTGGTTAGTATTCTGCTGTGT-----GACCC--------TCTCTGTTTCTCTGTGGGTAGACA--TTGGTTGTTTCCGCTCATTGGCCACAGTGATTATTGTGAGCTTCTCACAAATGCTCGAAAGTGGATCCGGCGCTCAGGCAGATGCC--CATGAG----TATCGCTAGCTACTTGACTGTCTTCCCAGA--GCATCCCTTCTAACTTATTCTGTGGCCT------TAGTTTTAGGCGCTGCTCAAAGGGACC----------------TGTGAGGACAGATTGCCAAGTGTCCAACTCAG------GACAGCGGCGTGACAAGTCTG---------CTTTCGGGGTACTCTC---GCTGGATCCTGAGACAACAGGAAAATGACTTCCCATGACCAAAAGGTATATCGTGTCTGGAG-------------------GTTCCTGCCATGAGCGGAGACTCTTA-TGGGTGTTCCTTGCAGGGGAG a score=16309.000000 s hg15.chr12_random 110480 221 + 590431 tgaaaccgatcaattgtcaggcccagcca-gatttcagagacattaaaatgtgagaaaacgtggtcttagaattggattaaaaacCATCCAAAATGGTTTAAAAACATGCAAAATG-----------CAATAATGAGATCATTTGACTCCTTGGTAAGTTTCCTGGCCTCTGAACAGGTGCGAATCTG--ACGCATA--TAGTGGTAAAAAATAAGATAGAAAATTGTCTGCTGCCt s mm3.chr5 119551024 211 + 149719773 TGaagccaagcca-agccaagccaagcaaagATTTCTG-GATATCCACCTGTGCAAAGGTGTGATCTCAGACTTGC------------------TCCTGTGGGTACTTACAGACTG-----GGTGGGCAA-GGGAAGATTGCTGGGTTCTCCAGAAAGGTTCTTGGCCTCCAGCAAGGCAGGGGTCTGCTACCCACAACTAGCGGGATGAAGTTGGCCATAGAATTGTCTGCAGCCT s rn2.chr12 10229832 211 - 46874691 -----tgagGGAA-AGCCAAGCCAAGCAACGATTTCTG-GGTGCCCAGCTGGGTGATGGCGTGGTCTCAGACTTGG------------------TGCTGTGGGTGCTTACAGATAGGAGCAGGTGGGCAA-GGTAAGATCGATGGGCTCTCCCGGAAGGTTCTCGGCTCCCAGCCAGGCAGGGGTCTGTTACCCACAACTAGTGGGATAAAGTCAGAGGTGAAATTGTCTGCAGCCC a score=35024.000000 s hg15.chr12_random 111023 552 + 590431 TTGATTATAATTGTAAAAGATAAAGACAGGTGGGAGAGAAAGAGGTAGATGGGTAGATGATACATAAGTTTGGTGTGCAGGGA----------------TTGTTATGAATTTATTTCCCTTTCTTTTGTTCCTT------TTTTCACAATAGTAATAAATAG-ATCAAGGC---TATAGGTCTGTTCATGGGGTAAATGGCAGCAGGTCAAGCTGGGGGTATGCATTTGAGTCTGGGGGTTCCAAATGAGGCTGGGGGTTGAAGGAATGAGTT----GGTGGCTGAGGACCTTGTCAGAAGCCCATACCAGGGCACAGAGACAGCAAGGGAAG-------TAGGGATTGCAATGCACAAC----CAGGGAC--ACACCTTGGGGAACTCCCAGGGCCTGGAACCTGGAGCCTGGAGCCTGTTTGTCATCACACAGAAGCTAGCCTGAGAGGGTGTTGTCAGGAGGACATTGCTGGGGGGCTGG---------GGAAAGAGCCAGGA----CCGCTTGTGGC--AAATAAGCCTCTTAC----TGGTTTGAAGAACATGTTCCTTTTCATGATCTGCCCTTATGGAATTAATTGTGTTTTGGA---AAAAAGTTGTCT s mm3.chr5 119551235 553 + 149719773 TTGGTTACA-----GGGAGAT------------GGGGGACATGAGCTGAGAGGCCA--GTGACATAG---TGGGGTTCTGGGAACTCTGGCCCAGTATGGTGTTTTG-GTTGGCTTCCGTT--TTTTGTTTTTTTGTTTTTTTTTGTACTAGTGACCATGAATGCCAAGGTAGGCAGAGGTGTGT-CCCAGAGGAAGCAGTCACAGCTGAGGT----AGAGTCCAGGTGGCTCTGGGGATTGGAATGAAGTCAGCTGGTTGCAGGGATGCATTATAAGGTGCTGAAGGA--TTCTCCCCAGCCTGTGTTAGGGTGTGGGACCAGCAGGGGAAG-------TGGACGTTGGAATGGAGAACCCAGCAAGGACAAACCCCTTGGGGAACT---GGAGCC----AACTCGGGTATGAGGC--------CACCAC-CAGGAGCTGTCTCCA----TGGTTGACAGGGGCCCCTTG-TGGCAGACTGGCCCTTTTTTGGTCAGAGACAGCATGTGCCTATAATGGCTGAGCCTAGCCTGGTGCACCATGCTTTGAA----ATGCTTGCTTAAATAGTTTGCTTTTATGGCTTTGAACTTGTCCAGCACTCGTAGATTTTTCt s rn2.chr12 10230043 535 - 46874691 -------------TTGGAGAT-------------AGGGACATGAGGTGAGAGGCCAGTGTGACATGG---TGGGGTGCCGGGAACTCCGGCCCAGGGTGGTGTTTTG-GTTTGTTCCTG---------------------TTTTGGTACTAGTGACCCTGAGCGCCAAGGTAGGCAGAGGCGTGTCCCCAGAGGAAGCAGTCACAGCTGAAGT--AGAGAGTCCAGGTGGCTCTGGGGATTGGAATGAAGTCAGACAGAGGCAGGGATACGTTATAAGGTGCTGAAAGA--TTCTCAGCAGCCTGTGTTAGGGTGCGGGGCTAGCAGGGCAAGTGGATGTTGGACGTTGGAACGGAGAACCCAACCAGGACAAACCCCTTATCGAGCT---AGAGCC----AGCTGGGGTATGCGAC--------CACCAC-CAGGGGCTGTCTTCA----TTGTTGACA-GGACGCCTTG-TGGCAGACTGGCCCTTTTTTGGTCAGAGACAGCA-GTGCCCATTGTGGCTGAGTCTAGCCTGGTGCACTGTGCTCTGGA----ATGCTTGCTCGAATAGTTTGTTTTTATGGCTTTAAACTTGTCCAGCACCCCTAGGTTTTTCT a score=333.000000 s hg15.chr12_random 111575 30 + 590431 TAATGAGATTGCTTTTAGAGCTTTTTGAGT s mm3.chr5 119551993 26 + 149719773 TGGtgtttttgtttttg----tttttgttt a score=11924.000000 s hg15.chr12_random 111611 156 + 590431 TCTCCTCGTTTCTGAGAGGAAAACAGCTGTGTTAGGAGAGAAACTGGTGGGGTTTTGTAGCCATGGTGCAGACCTGGCTTGCAG-------TTCTGCTGAGATAGCCT----CATCGGC-----------CCTCCTCAGAGCCCCTCTCTG---CCCCCTGCCacctcccaaagcttcagt s mm3.chr5 119552166 163 + 149719773 CCTCCTTGGTTTT---AAAAACACAAGCATATTCAGGGCGGGGGTGAGCGCGC------ATCACTGCACAGAACTGATTGGCAGTTACTAATTCTGCAGAGACGGCCTTGGCCACCTGCCTGGACATTGACTTCCTTAGAGTCCCTTTCTCCTTCTTCCTTTCCCTGTCCCT--------- s rn2.chr12 10230818 160 - 46874691 CCTCCTAGGTTTT---AAAAACACATGCATATTCAGGGAAGAGGTGAGTGTGC------ACCACCGCACAGAGCTGATTGGAAGTTACTAATTCTGCACAGACATGCTTGGCCACCTGTGTGGACACTGACTTCCTTAGAGTCTCTTTCTC---CTTCCTGtcccggtccct--------- a score=19817.000000 s hg15.chr12_random 112078 245 + 590431 cagttttcctcttttgtaaaatgggaacgatcacactacctcac----agagttgaggtgagggttaaacaagattgcgtgcggaaaacacttagccgggtgcctggctcgagcctgcatttaagacatgggagctGCTGGCTCTGTCATGAGGATGAACTGGCTTTTCAGCCC-TCAGCTGACCTTGTTCCTTGGCACAGGTGACTGCACTCAGCAGCCACCTCTGGGGAACTTAAGAGCCAGGTGTGT s mm3.chr5 119552329 214 + 149719773 CAGTTTTCC-ATTCTGGGAAATGGC------------AGCCTAC----AGAGGTGCAGTGAGGATTATGCCTGGTAGTG-GCA--------TTAGCAGGGCACCTGGGGATAGCTACCATTTCTCAAA----GGCTGGTAACACCATGAT-AGGACAAGCAAGAGGTGTGGCCCACCTGCTAGCCTCATTC-----CACAGATGGACACACACTCCTGGCCCATCTGCGGGGCTTGGAAGCCAGGTGTGT s rn2.chr12 10230978 227 - 46874691 cagtttccc-attctgggaagtcacaacaataatattagcctacagagagaggtgcagtgaggattagacctagtagtg-gca--------ttagcagggtacctgggcgtagctgccacttgtcaaa----ggctggtaattCCATGAT-AGGACAAGTAAGGGGTGTGATCTGCCCGCTGGCCCTATTC-----CATAAGTGG---CACACGCCTGGCCCATCTGCAGGGCTTGGAAGCCAGGTGTGT a score=24189.000000 s hg15.chr12_random 112555 344 + 590431 AGGAGGAAAGAGGGATAGCTGAGCTCTGTGTCCTGTGGTTTCCATGGCCAAAGCATCAGTAGATGTTGGCTC-AGGTGACCTAGTCACACAGGTGGCAGCTCTTCATTTCTACCTGGGTAACTTTTTCTTTTTTCTTTCTACACTTTTGTAAAACAAATAGCACAGCCCCTGCTCCTGGTTGACATGACTGAAGTCACAGGCTTGG-ACCAGACTCCCCTC---------TCAGTCATTCC------CAGGGAAATAGGCAAAGCGTGTCCCCCCAAAACTgtgtctttaaactcaacgcattggtgagtcctgaaatccattgagtgggctacagtcgaccttttaagaaatgaaatagg s mm3.chr5 119553333 289 + 149719773 AGAAGGGAACAGAGAGGCCCGAAGTCTTTCCTCAGAGGACTCTGTGGTTGAAGCATCACC---------CCC-GCGT----TGGTCTC-TGGGTGACAGCTT------CCTGGAAGGGTAGC-------TCACTGTTTCTCTGGCTTTGTGAAGC----AGCCCAATTTGTGGTACCAGGCGGTGTGGCTGGTGTCACAGGCTTTGCATCTAACTCCCTGTCCCTGAACGTCAGCAATTCTGTCCTGTTGGGAAAGGGGCAGGGTGCTTTCCC------ATGCCTGTTTAGAC-------------AAGGCC-----TCCATTG--------------GTCCTTT--AGAAAAGGAACAGA s rn2.chr12 10232011 290 - 46874691 AGAAGGGAGCAGAGGGGCCTGAAGTCTTTCCTCAGTGGACTCTGTGGCTGAAGCATCACC---------CCCCACGT----CGGTCTT-TGGGTGACAGCTC------CCTAGAGGGTTAGC-------TCACTGTTCCTCTGGTTTTGTGAAGC----AGCCCGGCTTGTGGCATCAGGTGGTGTGACTGGTGTCACAGACTTTGTGTCTGACTCCCTGTCCCTGAACATCACTAGCTTTGTCCTGTTGGGAAAGGAGCAGGGTACTTCCCC------ATGCCTCTTTAGAC-------------AAGGCT-----GCCATTG--------------GTCCTTT--AGAAACGGAACGGA a score=84443.000000 s hg15.chr12_random 113210 1222 + 590431 gaaatagaatgaaatggaaaataagagcgcctcacatagtaacttcagtgctagttatggaatgtgtgtacacaagtcagtgtgtactgagatgcagggtatgaaatgtgatttcttattgAGAAACACCGCTCCAAACTCCCTTCCCAGCATGGGGCTTCCCCAGCTGTGAGGAGGGTGCAGGGCTGGGCAGTGTTCATGAGGGGTCCCGCAGgaggaggggga-gctgggcttggcagcctgggttggaatcctagccttgcttctcgctggctgtgtgacctggggcaagtcact-ggcctctctgttctcag--tttcctcatccataaacagagacattgcagtccccgcctcatgggcttgttacagtatgttaatgaaggtctttgcacagagctcagaaAATATTAAATAG--CAGGTATTCTGGGGATAGTTGGAATGATTACAGTTCCTACTCCTGTAAA---TATGTCCCATATAGTCTGTATGCAGCCCTGCCATCATCTCACCAGGCTGACCGGCTCATCTATCAGGCAGGAGGGTTCCTAACCCTATAGAAAAGGAGACAGTTGGGGAG----------CATGGCTTTAGGGGAACCTGGGCTGCCAGTTAAGCCCCTCAGCCTGTAAGCAGCTCCTCCTGCCAGAGCTGATCAGCTGTCACGGTGGTTGTTTTCATGAACCTCAGACTTCCTCCCCACCCTAGAGAAGGAAAAGTTTCTACACTTATTTAAAGACTTCCCTGATTTTAAAAATAGGCCTTCCTCAG-AACACGGATCCC---CTGGGGCAGGAAGGGAGAAGTGCTGGGGGCAGCTGAGCCTGCTGCT--------------TGGAGTCCTCTTGCCTCCCCACAGAGAAGAGATTTGCTCAGGGGTTTCATTCCACCTTCC--ACCA--TCCAGGAGGTATGTTT--AGCAGGAGCCTGTG--GTCTGCCAGGCACAGAGGTCAT--------GCTGTGAACAGCTGG---GCCACATGAGAGTGTGATGGGGAAGGCCTGGCCAGCTCCTGAgagctgagat----------------------gaagaagaagatagaggacagggt--gaaaggggg----ttgcacattctacgcaaaag-aagtcacgtgtgcaaaggtcctgtggttggagaaaccagccaagtatgaaaggctcaatgtggccagagtggggacagaggtgagagggaaggtgaga--agatgggcagacagAGGCTAGATAGAGCGTGCAAAACAGG-------------AGTGGGCTTC-----------TGGGAGGCA-----------TTGATGTCt s mm3.chr5 119553622 1136 + 149719773 GAAGTAG------ACAGGAGGAAGGA-----------------TCCTGTCTCGGTT----AATGT----------GTCAGAGTGTGCT-AGGGGTGAGGCATGACAATTCCTCTGTC-TGGAGCCCCTCTGTCACAGGCCTGC--ACCAGCACGGGGTTC--------------AGG----AGCCCTGGGCCACATTCTCAGCAGGTCATGCAGGGAGAAAGGGACATACCACTGGGTCacctggattgcagt-cgggctccgtttctctgtagctgtatgacttctggcaagcctcttgacctctctggtcttgggttttgatcatcagtga----ggccagtttggacCCCG-GTAGCAGGGATGTTGGCGT-GGTTTTGGGAGA------------GCTCCCGAGGGAGT-GATAGTCTAGGATTTCGGAGGAT-------ATGCCACTA--TCCCATTCCTGTGAAAGTCATTACCCATGCAGCCTCCTAGCATC----------------------------------------------GGACTCCTGACCCTCCAGGAGAAGTGAC---CGAGGAGCACCGAGGATCATTGCTCTGGGTAGACCTG----GTCACCCATTCCCCCCCCCC---ACACA----CACACACCTGAGCCAGTCAGCTGGCACAGAGGTGGTTTTTGCAAACCTCAAACTTCCTCCCCACCCTAGTGAAGGAAAGACTTCAACGCCTATTTACAGACTTCCCTGATTTTATAAATAGGCATTCCTCAGAAACCCCGAGCCAGTGCTGGGGCGGG--------GGTGGTGGGCGCACTGAGCCCTGCCTCTCACTGGGCAGGCAATGGTGTCCCTGTGTCTGCTGGCAT---------TGTCTCTGAGTGTGGAGCCCGTGGTCCTGGCCAGGTGTGGAAGGTACAGTGTAGGCAGGAGCCTGTGGAGCCTGC---ACCCTGGGGTGTTCAGTCAGGGATGTGGGCAACTGGAGAGGTGTATGAGTGTATAGTGGGATCAGGGTAGCCAGCACCCCTGATCTGAGACATGTAGGGGGAACCTAAAAGAGGACAGAAAAGGTATATGACAGCGTTCGAAAGGAGCTTGCTTACACATTCCAGGCCAGAGCAAGCTCCTGGGGCAAAGGTCTTGAGGCCTGGAACAC--------------AGGCTGAATGGAAACAGAATGGCCACGCAGG-GAGA-GTCAGGTGAGACCAGACATGTAGTCA-----CGGCTGCAGCAGGAAGAAGAGG-------------GGTGAGCCTC------GGGGGGAGAGGGCGGGGCTAGTTCTTTACTACTT s rn2.chr12 10232301 1129 - 46874691 GAAGGAG------ACAGTAGGAAGGA-----------------TCCTATCTGGGGT----AATGT----------GTCAGAGTGTGC--AGGGGTGAGGCACGACATTTCCTCTGTC-TGGAGAAC--CTGTTTCAGGCCTCC--ACCAGCCCGGGCTTC--------------AGG----AGCCCTGGGCCTCGTTCTCAGTGGGTTATGTCGGAAGCAAGggattctccactgggcagcctggattgcagt-tgggttctgtttctccatagctgtgtgacttctggcaagtctctaggcctctctgttcctgg--ttttagcattggtga----GGCCAGTTTGGACCCAT-GGAGCAGGGATGTTGGCGT-TGTTTCGGGAGA-CTGTGTATAGCACTCCTGAGGGAGTGGATGGTCTAGGATGGGAGAGGAT-------GCACCCTCATCTCTCATTCTTGTGAAAGCCATCGCCTGTATAGCCTCTGAGCAGG----------------------------------------------GGGCTCCGGACCCTCCAGGTGAGGTGAC---TGAGGAG----------CTTTGCTCTGGGTAGACCTG----GTCACTCATCCCCCCCACCC----------------CACCTGAGCCAGTCAGCTGGCACAGAGGTTGTTTTTGCAAACCTCAAACTTCCTCCCCACCCTAGTGAAGGAAAGACTTCAACGTCTATTTACAGACTTCCCTGATTTTATAAATAGGTATTCCTCAG-AACACCGAGCCAGTGCTGGGGTAGG--------GGTGGTGGGCTCACCGAGCCCCACCTCTCCCTGGGCAGGTGACAGTGTTTGTGTGTCTCATTGCATTGC----CCTGTCCCTGAGTGTGGAGCCCGAGGTCCTGGACAGGTGTGGAAGGTACAGTGTGAGCAGGAACCTGGGTCGCCCGC---ACCCTGGGGTGTTCAGTCAGGGGTGTGGGCAACTGAAGAGGTGTATGCGTGTATAATGGGAGTAGGGTGTCCAGCACCCCTGATCTGAGACACTTGGGAGGAACCTAAGAGAGGAGAGAAAAACTATATGGCAACAT--GAGAGG-------TGACACAATCCATGCTAGAGGAAACCGCCTGGGCAAAGGCCTTGAGGCCTGGAACGC--------------AGG-----------CAGAATGGCCAAGCAGG-GAGA-GGTAGGTGAGACCAGATGTGTGGGTA-----CAGTTGCAGCAGGAAGAAGCGGGGTAGGGGGGTGAGGTGAGCCTTGTGGGGGGGGGTAGGGGGCGGGGCTTGCTCTTTACCATTT a score=18209.000000 s hg15.chr12_random 114723 315 + 590431 AAA--AGTTTTAAATAAGGGAGtgt-gtcagggttcccgagaccctatgcccagtgtcagtgactcactaggaggacctgtgggactcgcatgcagatgtgctcctggctcagattaattgccacaaaaggattgaaattaaaatcagtaaagggaaaaggcacgtggggtgaagttcagaaaaaacctggcacaagcttccagagccctctcctgggttgggggcagaggtccttggggtcacacttatttcctccagcagggagttgtgacaagatgtgtgaagtgtttgcaagcagagcagttccttagagaccc s mm3.chr5 119554758 259 + 149719773 AGAGCAGTGGGAAACCAAAGACTTTAAGCAAGGGCCCCCTCACAGCAT-CCTGTGTTCAGCACTTTGTTGGCAAGG-CTGC-AAA----CAAGAAGACTTG----TAGCTCAGGTT-------------------------aagccagccaaggggg-aggcac--tgggccgagaccacaggaagctggccgcacg---caagactcccctcc-----------caggggtcacacgggacacac-tgtttcctccagcagtgatccgtgacagga--cacgaggtgttcaggactagagaagccagttagaCc--- s rn2.chr12 10233430 260 - 46874691 AGAGTAGTGGGAAACCAAAGACGGTCACAAAGG--CCCCTCACACTATCCCCACGGTCAGCACCTTGTTGGCAAGG-CTGCAAAA----CAAGCAGACATG----TACCCCAGGTT-------------------------aagccagccaagggggaaggcat--tgggctgagaccacaggaagctggctacatg---caagactcccctcc-----------caagggtcacacaggacttac-tgtttcctccagcaatgaaccgtgacaGGC--CCCAAGGTGTTTGGGACTGGAGAAGCCAGTTAGAGA--- a score=10245.000000 s hg15.chr12_random 115042 306 + 590431 cccagagttttcat--tggagctgggcacagaggtaccctctgcctggcacttagaaaaattccatactctccaaatgaaagtaggagttcagcataaaccatgctgtttccacaagcagtct-aggcacaatgagctgctcttatcagggaatggcgg---------------gaattttccagaagtccaaattcccagatgcc----agtggaggccaggcaggcctgtctgaggaaggcagcctcgggaccgctgggctggcccttttctgcacaGGGAGTGATGTAGTCATGCTTGGAGGGATGCTCTCCTGCAGCTGATGGA s mm3.chr5 119555134 266 + 149719773 CCCAGAGATCTTATGAGGAGGGTGGTCCCTTGGGGACCCCCCCTGGAACACTTACAAC----CCAATCTCCCCA---------------------------------CCCCCACCACCAGCCTAAGGGATAGC----------------AGGAGGGTGGCGCCGCACACTA---CATCTCTTAGGGACCCCAAGTTCTGAGATGCTGAGAAATGGAGGCCAGGCAGGC-----TGAGGAGAGCAGCCACTAGCCCTCTAATCTCTTTTTATTCTGGACAGGTTGAGATGGGCTC-TGTTTCCAGTAAAGCCCTCTGGCTGCAGAtggg s rn2.chr12 10233807 239 - 46874691 CCCAGAGGGTTTATGAGGAGGGTGGTTCCTTGAGGACTCCCCC-GGGGCCTTTACAAA----GCG-------------------------------------------CCCCACCCCAAGCATAAGGGATAG------------------GGAGGGCGGGATAGCACGCTACAGCATCCCTTAAAGAGCGCAAGTCCTAAGATGCTGGGAAAC--AGGCCAGGCAGGC-TGTTTGAAGAGAGC-----------------CCTCTTTCTATTCTGTACAGGTTGAGACAGG--C-TGTTTCCAGTAGGGTCCTCTGGCTGCAGTTggg a score=14312.000000 s hg15.chr12_random 115355 130 + 590431 GCAGGGAAGGAGAG-AGCAGAGAGGAGCTGCGA-------CACGCTCCAAGTGAG----GCAGGGGGTTGGCCAGGGCAGTGGCAGAGGGTGGGGGAAGTAGGTGGCAGATCAGGGGTCA------TTTAGTTGCTGAAATGCACCAG s mm3.chr5 119556026 145 + 149719773 ACATGGATGCAGAGTGGCAGCGGGGAGCTGTGAACAGGGTCACCCTCCAAGGGAGAGAGGTCATAGCTGGGCCAGGACAG---CAGATGTTGGAAGATACAGGTGGCAGGTCAAAGGCCAAGTGTCCTTAGTTGCTGAAGTGCATTGG s rn2.chr12 10234482 140 - 46874691 acTCGGATGCAAGATGGCAGCAGGGAGCTGTGAGCAGGGTCAACCTCCAAGTGAGGG--GTAGTATCTGGGTCAGGACAG------ATGTCGGGAGACACAGGTGGAAGGTCAAAGGTCAAAGGTCATCAGTTGCACACGTGCATTGA a score=101598.000000 s hg15.chr12_random 118218 786 + 590431 TGGCTGAACTTGGAAAATGTCCATCTGCCACGCG-----CCTGTCAGGATGTGTGGCGTGATGGGTGGGGATCTCGTGACTTTTCTATGAAACTCTGGGTACTTTTACTTTTGGCTTCTCCTCCCCACGCCCTGCCCACTGGCCCCTCCAGTTTCCAGGTTGTGATGTCTCTGAACCTTGGGGCCGCCCTTCCGGTATTCACACATGGGCCCGTGGCGGGTGTTTTGGGACCGGGCTGCAGTACTGATTCCGTTGGTTACTGCCAACCAGACCACAGTGACAGGCCTGCTGGGGGCAGGAGTTTCCTGTTGCCTCATAGACACTGAGACCCTGGATTCCAAAAATAAAAGCACGAGAAACCACCGTGACCTCATGGTCTCTGCTTGCAGGGGGTTCT--ACGCACCCGGGACCATCTTCACCTGCAGTGGCCTGGCCCGGCCTGGGCCATGTGGGCTCTGAGTGG------CCA----ACTGCCTGAAGCTCTTGCTCTCTGTCCCCGCCTTCTAGGCAGTCACCCGCAGGGCCAAGGTGGCTCCCGCTGAGAGGATGAGCAAGTTCTTAAGGCACTTCACGGTCGTGGGAGACGACTACCATGCCTGGAACATCAACTACAAGAAATGggagaatgaagaggaggaggaggaggaggagCAGCCACCACCCACACCAGTCTCAGGCGAGGAAGGCAGAGCTGCAGCCCCTGACGTTGCCCCTGCCCCTGGCCCCGCACCCAGGGCCCCCCTTGACTTCAGGGGCATGTTGAGGAAACTGTTCAGCTCCCACAGGTTTCAGGT s mm3.chr5 119567498 709 + 149719773 TGGATAAACTTG--------CCTTTTGCTGCTTGTGCGACCAGGCACAGTCTGGGGAGAGCAGGGTCGACTTCTC-TGAGTTCTCTATGAAACTGTATTTACTTTTACTTTTGGACACTTCCTCCTCTGCTCT---CGCCAGCTCTTTT---------------ATTTCTCTGAGAGT--GCACAGCTCTTCTGGTATTTACACGTGGGCCT--------TATGCTGAGACTGGGCTGTAGTA------CCGTTGGTGACGGCCAGCCAGACCGCAGGGACATGTCTGGTGGGATT-GGGGTTTCCTGTGGCCTCTTGTACACCGAGATACTACATTCCAAAAATAAGTCTCCCTAAAACCCCCAC--CTTTTTGACCTGGGCT---AGGCTGCTCTCTGAGCACCCTGG-----------------------GGCCTGGTTTGGGTCCTACTCCCCATCACAGG----TGCCA----GGGACCTCAAGTGCTCG--CTCTGTCCCGCCCCTCCAGGCCGTCACTCGCAGAACCAAGGTGGCTCCCACCAAGAGGATGAGCAGGTTCTTGAAACACTTTACGGTGGTTGGGGACGACTACCACACGTGGAATGTCAACTACAAGAAGTGGGAGAATGAGGAGGAGGAGGAGG---------AGCCAGCGCCCACATCAG---CAGAGGGTGAGGGCAATGCTGAGGGCCCAGATGCCGAGGCTGGCTCTGCCTCCACGCCCAGGCAGTCCCTGGACTTCAGGAGCCGACTGAGGAAACTCTTCAGTTCCCACAGGTTTCAGGT s rn2.chr12 10244532 716 - 46874691 TGGATATACTTGGGGAGAACCCCTTTCCTGCCTGTGCATCCAGGCA--GTCTGGGGAGCGTAGGGGCGACTTCTT-TGAGTTCTCTGTGAAACT----CTACTTTTACTTTTGGAGACTTCCTCCTCTGCTCT---CACTAGCCCTTC----------------ATTTCTCTGAGAGT--GCACAGCTCTTCTGGTACTTACACGTGGGCCT--------TATGCTGAGTCCGGGCTGTAGTA------CCGTTGATGACTGCCAGCCAGACCGCAAGGACATGTCTGGCCGGATT-GGGGTTTCCTGTTGCCCCTTGTAAACTGCGATTCTAAGTTCCAAAAATAAGTGTCCCTAAAAACCCCAC--CTTTTTGACCTGGGCT---AGGCTGCTCT--GAGCACCCTGA-----------------------GGCCTGCTTTGGGCCCTACTCCCCATCACAGGGCATCGGCATTGGGGAACCTCAAGTGCTTG--CTCTGTCCCGCCCCTCCAGGCCGTCACTCGCAGAACCAAGGTGGCTCCCACCAAGAGGATGAGCAGGTTCTTGAAGCACTTCACAGTGGTGGGGGACGACTACCACACCTGGAATGTCAACTACAAGAAGTGGGAGAACGAGGAGGATGAGGAGG---------AGCCCGCCCCCACGTCTG---CGGAGGGCGAGGGCAGTGCTGTGGGCCCAGACGCTGAGGCTGGCTCTGCCTCCACACCCAGGCCATCCCTGGACTTCAGGAGCCGGCTAAGGAAACTCTTCAGTTCCCACAGGTTTCAGGT a score=27292.000000 s hg15.chr12_random 119004 737 + 590431 AGGTGGGGCAGGAGTCCGGGATACCCAGAGCTGGCAGGAGAGCCATCGGGGAATGTGAGGCAGGCGGCCAGGCTGAGCCCATTTGGCC-ACTGC--CtcattcattctacgagtgtttgcccagcacctaccacgtgccggggaccctgtaccgtgctgggaatgcggtagGCAGATCTCAAGTTGTCAGGGAGAA-aagagccatgatccaaaagcaaaaggtccaccaatggatgagtgttaaaccgaatgtgttctatc------catacagtggaatatgattccaacatcaaaagcaaagaagtgctgatccatgccacaatgtggatgaaccttgaaaacatggtgctgagggaaagaagccagacacaaaaggccagagt---gtaggattccattgata-ca-aaacatctagaacaggcaaa-tccatagagacaggaagcagattg---------------------------gcggctgcc----acaggtgggagtgtttccatttgaggagatgaaaatgttctggaatt--atagtggtgatggttacacaaccttgtgaatggactgaatgccactaagttttacgccaactttaaaatggtaaattttacgttatgcaaattttaccac--------aCACAAAAAAAATAAATAAAGGGTAAATAACGGAGACAGAAAAAACACTCATC------TGTTCACTCTGCGAACACTCAGTGCCAGAGGCTCCC----------------------CTGCCT------------------CATGGAGACCCA---------------------------TCACGCTGGGGGCCTCAGTCTCTCTTGTG---GAGTG s mm3.chr5 119568207 707 + 149719773 AAGAGAGTGAGAGGTC-------------------------GCCA----GGTCTCTAAGGTGG-----------GAGCCCCCTATGCC-ACTGCCACCCCTGTACCCCGCAGGCGCTTTCTGAGAACCTTGCACGTGCCAT-TGCTCCGCA-----------------TGTTCTGACCCTGTATTAACAGTGGGGG-AGGGGCCGT-----------------TC--------------------------TGGGGCCTGTC------CCTCCAGAgg-atatgacttgggcatgacagtgaaggatatgcagatacatgctgc----------aactttgaacacatgac-ccgagggaccg--gccagacagggaaggtctcagttgtgtatgatgctg--gatagcggaacggtccagcagagccagcagccggggagccagatgggaggctgtgggagggaggaaaggagagagagggtgtggccgcttgagaaagatggga--cttcc--tttggggtggtggaaatactctagagctagagaatggtggc---tccacagcctcatgactggacccactgctgaggatctttatggcaacctatgaacggt-tattttatgcta-gttactttcaTTGT--------GGCCAGTGTGTATGCTCAGAGTAC----------TACGAGAGAAGCATTCATTCCAGAGTGCCTACTCCTGGA----CAAG--CATGAGGGTCCC--TGCTTTGCAACCTCATCACCATGCTTGGCCCTCAGAGCAGAGAGCATGTGGGGCTGTGGggctggggaggctggggaggctggggaggctagggaggctggggaggcttggg---aggTG s rn2.chr12 10245356 677 - 46874691 aaaaGAGAGGGAGGTC-------------------------ACCA----GGTCACTAAGGTGG-----------GAGCCCCATCTGCCCGCTGCTGCCTCTGCATCCCACAGGTGCTTTCTGAGCACCTTGGACGGTCTAT--GCTCTG-------------------TGGTCTGACC-TGTATTAGCAGTGGGGGGAGGGGCCAT-----------------TC--------------------------TGTGGCCTGTCTCTGTCCCTCCAGAGG-GTGTGACCTGGGCATGACA---AAGGacatgcatacatatggtgt----------gactttgaaaacatgac-ctgagtgacag--accacatagggaaggtcccagttgcgtgggacgcca--gatagct-aaccgtccaccatagccagc---tgggtagacagatgggaggctgtgggagagaggaaa--agagagagggggtggctgcttgagaaagaaggga--atttccttttggggtggtggaaatagactagaagtagacagtggtggcggctgcacagccttgtgactgtacccactgccgcagaTCTTTATGGCAATCTGTGAATGGT-TACTTTACTCTA-GTTATTTTCATTGTAAGGAATTGGCCTGTGTATATGCTCAAAGTAC-----------ACTAGGAGAGCATTCATTCCAGAGTGCCTGCTCCTGGA----TGAGGGCATGAGGATCCCCCTGTTCTGTAAGCTCATCACCATGCCTGGCTCTTGGACCCAAGAACACGTgggtctg--------------------------------------------gggaagcttaggttaaggtg a score=3434.000000 s hg15.chr12_random 119741 125 + 590431 ATG------------------------------CCCA-----------------AAATACC---TGCCTGTCCTGGCCTTAGCCCACTGCTGATAGTCTCCAGGTGTGGTTGCAGGGAGAAAGCAGAGCTGGGGTGGTCCTCACAGACGAGCGAAGGGAACTGAACTTTCTGTGg s mm3.chr5 119569198 122 + 149719773 ATa------------------------------cacacacacacacacacacacacacacC---TGACTCTCACTGTC----ACCACCTC------TCTGCAGATGCTACCACAGGGGGAGAGAGAGG---GGAACTTCCTGGCTGCAGAGAGAAACAAGCTGAGCTG------- s rn2.chr12 10246274 151 - 46874691 acagacagacagacagacagacagacacacacacacacacacacacacacacacacacacCAGCTGGCTCTCACGGTC----ACCACCTC------TGTGCAGATGCTGTCACAGGGAGAGGGAGGGG------ACTTCCTGGTTTCAGAGAGAAACA-GTTGAGCTG------- a score=2792.000000 s hg15.chr12_random 120381 22 + 590431 TGTCCCGCCATTTAGAAGGGCt-------- s mm3.chr5 119569336 30 + 149719773 TGTTCTACCATTGTGAAGGGCAATTTTTTT s rn2.chr12 10246441 30 - 46874691 TGTTCCAACATTGCAAAGGGCAATTTTTCT a score=42004.000000 s hg15.chr12_random 120538 1341 + 590431 ATTTCTGATTTTGAGGGACAAATGCAAGTGGAGTCTGGTCAGCCCTCTCTGGACCCAATCCCCATCCCCAAGGTGGCAGAGCCTATGTCTGGGTGCCTGGAAACACATTCAAGTCCTGG-GAGGGCACAGGTCTGGAGACCACAGGGAAGCCCA--CAGTTCT---------------CAAAGGT-----GGGCATTTAGGGGATGCTATTGCAGGTGTCCCCAAACAAAATAGACCCGTCCCTCTTCTGGAAGCAGAGAAATGTAGCCCTTGCCTCTTCCATCGCTGACTTTATTCCAGGGTAAAAGAGAAAAAAATTATTTTGGTCTTTTTTTTCCCCACTCTTGTGTGGCTGAAATAGAGCCTGTCCCTCTTCTGGAAGCAGAGAAATGTAGCCCTTGCCTCTTCCATTGCTGACTTTACTCCAGGGTAAAAGAGAAAAAAAAAATTATTTTGGTCTTTTTTTTTCCCCACTCTCTTGTGTGGCTGAAAGCAGCAAAGCTGAAAGCAGCAAAGCAAGCCAGCTGACATGCCAGAGCGCCTGGCGAC---CCAGCTTCTCTGTGGCTGTGATGGGAAAGGAAACATGCTATTAAGTTGTTGGGTTTGAAATCCCAAACCCTCAATTTCAGGAGCAGAAGGAAGGAAACAGCTTCCTTGCAGCTGCAAGGGGAGCCCTGGGCCGCCCCATCAGGATATCCCCCTCCTGCCTGGGCTTAGGGCTGGGGACTGGCCCCTGAGCTG-GGACACCCAGATACTCCTGCTGGGGAAAAAGACGAATGCCTGTCATAAAGTGAGTGGAGGTGTTTattcacccacccaacagtcacttattgagcacctgctgtgtacAGTGACAAATGTGGCA---------GACACATCTTTGCCCTCATTGAGGATTTGGCAGGCTGCAGAAAGGCAGGAATGACGGGAGCCATCACTGAGACACACATTGGTTACAAATGGAGAGAAGCCCTCCGCAGGGAGGAGGGGGGCTCTGAGAGGTCCTGGGGGTGGGGGGACCTGATC--AGGGACTGGAGTCGAAGGAGGTGACACCTGCATGCTGAG----CAGGAGTGAGCCCGATGGGTGG-ATGGCGTGGGAGGCTTCCAGGTAGAGGGGCTTCGTTTGCCAAGGACCTGCAGCATTGGAGGAATTGAGAAGGGCGCACGTGGATCGGGTATGGGTGTTGCCAGCAGG--CAATTGGCAAGAGAAGAGGCCAGGGAAGGTCATCCACGGGTCATGGGCTGCCTTTGAAAGCTCTAAGTGTGTGGGTGGG----AGATCAGATTTGTGGAGGGACTTGGTGGCAGCAGTGA-GGCCACAC-TGGAGTAGGTGG-------TGAGGCTCAGGGGTTGTAG--TCTCTGCAGGTAGGATCGGCA s mm3.chr5 119569551 939 + 149719773 -------------ACGAACAAGGGCAAGC---TTCTG--------TCTCTG--------------CTCTGAGGTGGCGAG---------CAGCTGTCTAGAAGCAGGGATGCCTCCAGGAGAATGCAAGAGACCAAAGAATAAATAGGGGCAGT--CAGTTCCTGGTGAGTCCAGTAGCTCAGGG-----AGGCACTTTGGGGGTGCCACTCAGGGTATCA-TAGTCCAAGT----------CCCTTCTGGAAGCAGGAAGAGGCAGCCTCGGTCTCACC------------------------------AAGAACACTGTTCT-----------------------------------------------------------------------------------------------------CAGGG----AGAGAAAAAAAAA--------TGTTTGTCTTTTCTCTCACT------------------------------------TAAAGTGAGCCA----ACAACCCAGCATCCCTTGCATCTTGCCGGCCCCTCTGCGGCTATGGC-----AGGAAACGTGGTATTATGTTGTTGGGGTTGAAATCCCAAACCTGCAATTTCA-GAGCAGAGGGAGAGAGCCTGCTTCCTTCCAGCTGTAAAGGGAGCCCCAG--CGCCCC----------CCGCCCCCTGCATGTCCCT--------------GCCTCTGAAGGG-ACTCATCCCCACCACTCTGCCTGCCAGGCTTAGGTCTGACTCTCATAA---------AGGTATTTATTGTTTGAGGGGACAGTC-------TTCCACCTACTGTGGATGACA---------------------GACAAATGC-CGC-------------TTAGCCTGCT----------------------------------------------------------AGATGTCCCCTGCAGGCAGAAA-----------------TTGGAGGTGGAGG----TAGTCGTGGTGACTGTCAT--------GTGACGCTCA-AAGCTGAG----CA-TAATAGGTCCTATGGGCAGAAAGGCATG------TTTCAGGCAG-GGGCCTGAGTTGGTCAAGGGCCT-----------GGTATGGAAAGAGAC---TGTGGCCTGGGTA-GGGGGTGGAGAAGGGGTACCAGGGTCCTGTGGAGAAAGCAGCAAGGTTGCTCACCAAGGCAGGGGCTGCCATGGACGG-----GCTGTGTGGGGGCCGCCATGGTCAGGTTGGTTGAAGATCTTGG--------ATGGAAGCCCCGGATGGGATGGGAGGAAGGAGCGGGGGTTCAGGATCCTTGC--TGTCTGCTGGTAGGATCTGCA s rn2.chr12 10246845 872 - 46874691 -------------ATGAA--------AGC---TTCTG--------TCTCTG--------------CGCAGAGGTGGCACA---------CAAGTGTCTAGAAGCAGGGCTGCCTCCAGGAGTATACAACAGACCAAAGAATGCACAGGGATAGATACAGCCCCTGTCCAGTCCAGTACCACAGGGCAGGAGGGTGCTTTGGGGGTGCCACTCTGGGCATTG--AGTCCAAAT----------CCCTACTGAAAGCAGGAAGAGACAGCCTCAGTCTCACC------------------------------ACAGACCCTGTTCT-----------------------------------------------------------------------------------------------------CAGGG----AGGGAAAAAA-----------TGTTTGTCTTTTCTCCCACT------------------------------------TAAAG----CCA----ACAACCCAGCATCCCTTGCATCTCGCCAGCCCTT-TGCGGCTGTGGC-----AAGAAACGTGGTATTATGTTGTTGGGGTTGAAATCCCAAACCTGCAATTTCT-GAGCATGTGGAGGGAGGCAGCTTCCTTCCAGCTGTACAGGGAGCCCCGG------------------CCGTCCCCC-CATGTCCCT--------------GTCTCTGAAAGGCACTCATCTCTACCCCTCTGACTACTGGGCTTGGGTCTGACTCTCATCA---------AGATATTTATTGTCTGAGAGGACAGTA-------TAGCACCTACTGTGGATGGCAGCAAGC-TGGCTGGCAGGGGTGACAAATGCTTAC-------------TTAGCCAGCA----------------------------------------------------------AGATGTCCCCTGCAGGCAGAAA-----------------TTGGGAGTCT-GG----TAGTC--GGTGACTGTCAT--------GTGACACACA-AGGCTGAGCATACA-TAGTAGGTCTGGTGGGTGGAAGGGCATG------TTTCAGGCAG-AGGCCTGAGTTGGTTAAGGGT-----------------------------------------GGA-GAGGGTGG----------CAAGGTTCCTGTGGAGAAAGCAGCAAGATTG----------------------TGGACAG-----GCTG--------------TGACCAGATTGGTTACAGATCTTCG--------ATGG-AGCCCCGG-TGGGATGGGAGGAGGGGGCAGGGGTTCAGGACTCTTGCTGTGTCTGCTGGTAGGATCTGCA a score=21634.000000 s hg15.chr12_random 123774 389 + 590431 cccacagccaccatcaGTGAGACCACCCACCCACTCCACACTGCTCCCCACCTGTCCTCTGTCAGCCCATCACAAAGCCCAGGAGGCTGTGTTTCCCATAGCAGCTCTCCTGAATTCTCCAGGACACCAGGA-CTCCTCTCCCCTTCACCATCTTCACCCACTATGAGCACACGAGAGCTGGGGCAGGTACCTCGCATCTCCAGGCAGA----AGCTAGTT-------TGTAAGCACAGCAGCCG---TCCCTGTAGCCAAGGAACC--TGCAGTCAGCAGTCCCCAAGGTCCCTTCCAGGACTCGGACTGCCGAGGCAGGGCTGTGTTGAATTATTTATT---------GAGCATCTGTTCTGTGAGCACCCCAGCAACAGCAGTCCCCAGGAACAGAAAAATACAAACTTGCc s mm3.chr5 119571661 347 + 149719773 CCCGCAGCCACCATTAGT--GCACAGGCCTCTACTCCAGTCTGTCACCTGCCCTTCCCCCAT---------------TCCAGCAGGTCACTCCCCCCAACCTCCCCCCCCCAATTCCTCCCACTCTCCAGGAGAACCCTGCCTTCTCCCCCTTTCCCCTGACTATGC---------AG----GGTGGATGTGTCACA-CCCTAGGACGA----GCTTAGCCCACTGGGCGAGAACACCGCCACCTCACTCCCTGAGGACAGGCAGCCTTTGCAGGGAGGGGTAT---GTGTGTCGTCTTGTACTCAGAGTCCCAAGGCTGGGGTGTGTTGAATATCTTATT---------GAGCATCTGTTCTGCA--------------GATGAACCACAGAGAGAGAAAAGGAGAC------- s rn2.chr12 10248803 354 - 46874691 CCCTCTG---CCATTAGT--GCCCAGGCTTCCACCCCAGTCTGTCACCTGCCCTTCCTCCAT---------------TCCATCAGGTCA-------CAACCCCACCCCCA----TCCTTCCATTCTCCTGGA-AGCCCTGCCTTCTCCCCATTGCCCCTGACCATGC---------AGCCCTAGCTGAC------CA-CGCTAGGATGAGATTGCTTAGCACACAGGGTGAGAACACTGCCACCCTACTCCCTAAGGACAGGCAGCCTTTCCAGGGAGGGG------GTGTCCCTTCTGGAACTCAGAGTCCCAAGGCTGGGGTGTGTCGGACAACTTATTGAGTATCTGGAGTATCTGTTCTGCGTCTACCCCAGCAACAGTGAACCACAGAAGTAGAGAAGGAAAG------- a score=1301.000000 s hg15.chr12_random 124459 20 + 590431 -CTGATTATTTGTTGCCATCT s mm3.chr5 119572008 21 + 149719773 TTAAAACTCTATATGCCTTTT s rn2.chr12 10249157 20 - 46874691 -TTAAACTCTATTTGCCtttt a score=21384.000000 s hg15.chr12_random 124479 455 + 590431 AGGTATGGGCAGTTTGGTTTGAGAGGTGGTATTT-GGGAAACAGTGACCAAAGGTCAGAAAATGAGCCAGAGATGTTCTGGGAGGGCAGGGAAGGTGGGCAGCGCCTAGAGGCAGAGCAGGCCAGGAGGGTGGCGGGAAGGAGGCTGGCAGCTTCTATCAGAGAGGAGCTGGCCCTGCACAGCCTCCATCCTGGTGGGGCCTCTGGCGAGCTATAGCAGTAGCCTCCCATCCTTAATGGCTTTGCCCAGTGGTTTCACCCACGTGCTTCCAAGCCAGCTCTTAATGATGGGAGAGGGAGGGCC---TCTGTGGGGGTCTCATGATCTCTGGCACCTTCCCTCGGCCCACAGGTCATCATCATCTGCTTGGTGGTTCTGGATGCCCTCCTGGTGCTTGCTGAGCTCATCCTGGACCTGAAGATCATCCAGCCCGACAAGAATAACTATGCTGCCATGGTA s mm3.chr5 119572029 272 + 149719773 GAGAGTGG--CATTTGCTTTGAGAGCTGGTAATAAGAGAAAC----------------------------AGA----CTGGGTGGCTAGGG-------------------GACAG----------------GGAGTGAGAGAGACT--------------------------CCCCG-------------------------------------------AGCTCCCCAC-----AGGGCACTGAGGG----------------------------GTTCCAGAGAATGG----AGGAGGCCC-----TGCCGTGCACTCAGAGCCTCTTGCTCCTCC-------CTCCAGGTCATCATCATCTGCCTGGTGGTCCTGGACGCCCTCCTCGTGCTTGCTGAACTCCTCCTGGATTTGAAGATCATCGAGCCGGACGAGCAAGACTATGCGGTCACGGTA s rn2.chr12 10249280 289 - 46874691 AAGAGTGG--CATTTCCTTTAAGAGCTGGTACTG-GAGAAAC----------------------------AGA----CTGGGTGACCAAGG-------------------GGCAG----------------GGAGTGGGAGAGACTGTGGGACCCTA--AGGGAGGGGTT--CCCCA-------------------------------------------AGCTCCCCAT-----AGGGCACTTCCGG---------------------------CGTTCCTGAGAATGA----AGGGGGGCCAGGCCTGTCCTGCCCTCATAGCCTCTTGCTGCTCC--------TCTAGGTCATCATCATCTGCCTGGTGGTCCTGGACGCCCTCCTGGTGCTGGCTGAGCTCCTTCTGGATTTGAGGATCATTGAGCCG---------GATCTTTCGGTCAAGGTA a score=2291.000000 s hg15.chr12_random 128708 35 + 590431 CCCTTCAGGTATTCCACTACATGAGCATCACCATC s mm3.chr5 119572910 35 + 149719773 CCCCACAGGCGTTCCACTACATGAGCTTTGCCATC a score=24926.000000 s hg15.chr12_random 129881 140 + 590431 CAGGGATTATCATCTCAGTTAAGACACGTTCAGAACGGCAACTCTTAAGGTTAAAACAGATGAATGTACAATTGGCCGCCAAGATTCAACACCTTGAGTTCAGCTGCTCTGAGAAGGTAAGAAAGACGACACATCTGGGg s mm3.chr5 119574399 128 + 149719773 CAGGCATCATCATCTCCGTGAAGACACGCTCAGAACGGCAGATCTTAAGGCTAAAGCAGATAAATATCCAACTGGCCACCAAGATCCAGCATCTGGAATTCAGCTGCTCCGAGAAGGTGAGA------------CTCGAG s rn2.chr12 10251688 126 - 46874691 TAGGTATCATCATCTCAGTGAAGACACGCTCTGAACGGCAGATCTTACGGTTAAAGCAGATAAACCTCCAACTGGCCACCAAGATCCAGCATCTGGAATTCAGCTGCTCCGAGAAGGTGAGA------------C--AAG a score=82754.000000 s hg15.chr12_random 130326 1569 + 590431 TGGCCTCTGCCGCAGCACCCGCCTGCAGCAGAGCGCTGCTCATGCACCTAGAGCGCCCTTCCCTGGGCTGAGCCTGCCTTGTCCTTTCAGATCCAGCCCAGGCGTCACATCCTCCCTGAAGCTGTGCCCACCCCCACATCCCAGGGCTCTGCCAGGTCCCCCACGTTTGTCTTCTCACTGCTGTCACTGCTGCTCAGTGAAGCCTATC-TGATTG----TAGCAGTCTCCTCAGCAGACTGAATGCCACAAACAGCGTAGCTTTCATTCATCTCTGTGGTCCTGTGCCTGGGGCTCACTGAATGATTGATTGTCACATCCCTGGCGAGGCTCAAAG---TAAATTCCAGTGTTTGTCTGCTTTTGCAATAGGAACAAGAAATTGAAAGACTTAACAAACTATTGCGACAGCATGGACTTCTTGGTGAAGTGAACTAGACCCGGACCAGCTCCCCTCAAAAAGAAGACACTGTCTCATGGGC--CTGTGCTGTCACGAGAGGAACAGCTGCCCCTCCTGGGCCGCTTGGTGAGAGGTTTGGTTTGATA----CCTCTGCCTCCCTCCTGCCAGCATGGATTCTGGGTGGACACAGCCTTGTGGAAGGTCCAGTACCACCAAGAGCTGCCCATCCACTCCCACCCCACACTGTATCAAATGTATCAC---A------TTTTCTCATGTTGAACAC---TTTAGCCTTAATTGAAAATGAGCAACAAAGCTGGACAATTGCTAGTTGTATATAAAATTTAATCTCACCGAATGTACAGTTTTCAAATTTCACGTGTATATTAAGGAACTGATGCATCTGAGCATTCTGAAAGAAAGAAAAAGAAGCTACTTTAGCTGCCACCCCATTCTAGAAAAGTCTCTTATTTTCAAGCTGTTCTAAATAGCTTCGTCT-CAGTTTCCCCAAAAGG--------GGTACCCAGGCCCCTCCTCTGTGTGCCCCAGCTGCATCAGCCAGCTTCTAGGTGGCTCCATTGTTTTCTGCCACCTGACAACA--TTTTTCCTCAATTACTGTACAACTACTGTATAAAATAAAACAACTACTGTATAAAATAAACTCTCTCTTTTCCCTGGACCCTCCTACTGTATTCTTTCCTCTGTGGCA-CCCATACCAGCCTGCCAGTCGGAGAGCAAGCTAGCTACAGTGCCTGGTGCAGAAATGGCAATTAGACCCAAGACTCCACTATAATTAACAAGGTATTTGGGGGAAGATCCCCTTGTAAGGGCTGTGTGCTCTTCTCGCATGATTTTATCTAATATTTTGCTATTTTTTTGTACTCATTTCAACCGGACCCAAAAAGGAAAAAACCTGAACTGAGTATTTTTAAAATAAATAACTCAAAGCAGGGGATGAATGAAC---TGGCCAAATCCCCCTTGCCTCTGCTGCTTCAAGTCCTGTTCATGTTCTTTACCATCTCCCCAAAGACTTTTTGGGTTCTATCATCTATGACCTATGTGTTAAG-----------CATATTCCCCATT-CAAAAGTCAGATAGAATAACATTTCCAAAAGGAAAAAAGGCAGGAAGGGAGTGGAGAAGGGCAGTGTGCTGGTTTGGAGGCAACCTCAAAGGTTAGAAGT-ATAATAAg s mm3.chr5 119574527 1265 + 149719773 TGG----TTTCACTGCTGTCCCCTCCAGTCCA-TGTTGACCCCACGCCTATAGTTCCCT--------------CTTCTTGGTCCTTTCAGCTTAACT-------------------------TGGGCTCC--------TCCAAGAGCCAGGTCCAGTCCCTC-CTCTGGGCATCTTGTGCCTGCTATTGCTGCCCAG---GGCCCTTT-TGAAAGCCACTCGC--TCCCATCAGCAGCCAGAATGCCAC--------------TTAGCTG--TCTGCAGCCCCGGGCCTGGGG------GAA----------------------TGTAGCTCAGAAGGTCACCACCCAGTGTTTGTCTGCTTTTACAATAGGAACAAGAAATTGAGCGGCTCAACAAGCTGTTGAAACAGAATGGACTTCTCGGGGACGTGAACT-------AGC---CTTCC----------AGACACTCCGCCTGGAGTAGCTGGGCTGTGGCCAGAGAGCCA---------------GCCTGTGGTGCAAAGTCCAGTCT-CCA----TCTCTGCCT-TGGCTTGCACCCCGGGATGCTGG--GGACACATCTTCACTG--------GTACTGCTGTCTCCTTGGCGTCCACGCCCTACGC---TTGCAGCAAAGGGATCATCGCACCAACCTTTTCTCAAGCTGGACTCCACTGTCGC-----TCAAAAATGATCAAGGAGGCTGGGC---------TTGTA----------AAGCCAACTTAATGCACA------------------TCCTGAAAGGAGCTGGAGCCC----GCACCCCG---------------------------AACCAGCTCACTCT-GGAAAACCTTTCTCTACTAGAATGTCC---CCAGCTTCTCCTGCTGCCTCCCTAGGGGAGCCATCATGGTACCCA-GTCCCTCCTCTGCAGCATCCAGCTGTACC-ATCAGCTTCAAACTGGCTCTG-----------TACCCACTAGCAGCTCTT---TCAGTTACTGTACAATTAATGTGTAA---------------------AATAAGCCCTCT-CCTTCCCAGGGCTCACCCACCACATTCTCTCCTCGGTGGCAGCCCACACCAGCCCACCAGTTATACAGCCAGCACATGGCAGGGTC-----CCAAGGCTGCCCTGAGGGCC---------CTGTAATTAGCACAAT-CTTGGGATACAACCCCCTTGT--GGG--------------CACACAGTTTTACATAGCTCCTTGCTG---GTTTGTACCTCT------CAAATGCCAACAG-----------------GCATTCTGAAAACAACTCCCACTAGACCAGGGATG-ATGCACTGACGAGGAGGCTCTCCATGCA-CTGCCACGTCACACTC------TGTTCCCGCTCATCTCCCAGAGG-----------GCCGTGCCCTTTGACCTGTATGTGCAGGGTGCTGGACCCATCTGACCCAACACCACAGCCCAGCAGAGTAAAGTTTCTGAGAGTT-------TTAAAAGGCAGTGGAGTAGAGCAGAGGGCTGCTTGAAGGGTAACAGCAAGGG---GAGGCGGCAGCTAG s rn2.chr12 10251814 1209 - 46874691 TGG----TTCCACTGCGGTCCCCTCCAGCCCA-TGCTGACA-------TGTAGCTCCCT--------------CTTCTTGGTCTTTTCAGCTTCAGT------------------------ATGGGCTTC-----------AAGAGCCAGGTCCAGTCCCTC-CTCTGGGCATCTTGCTCCTGCTATCACTGCCCAG---GGCCCTTCCTGAAAG----GGGT--TTCCTTCAGCAGCCAGAATGCCACAGAC--TGTAGCTTCTAGCTA--TCTGCAGCCCTGGGCCTGGGG------GAA---------------------ATGTAGCTCAGAAGGTCATCACCCTGTGTGCGTTTGCTTTTACAATAGGAACAAGAAATTGAGCGACTGAGCAAGCTGTTGAGACAGAACGGACTTCTTGAGGACGTGAACGTGAACTAAGC---CTTCC----------AGAAGCTCCATCCAGAG---CTGGGCTGTGTCCAGAGAGCAA---------------CTGTGTGGTTTGAGGTCCAGTCC-CCACCCATCTCTGCCT-TGGCTTGCACTCCTGGATGCTGG--GGACAAATCTTCATGG--------CCACAGCTGTCTCCTCCGTGTCCATGCCCTACGC---CTGCAGCAAAGGAATCAT---AACAACCTTTTCTCAAGCTGGACTC---TGTTGC-----TTGGAAATGG---AGAAAGCTGGAC---------TTGCA----------AA-CCAACTTGACACACA------------------TCTGGGATGGGGCTGGAGCCT----GTGCCCTG---------------------------TGCCAGCCCATCCT-GCAAACCCTTTCTTTACTAGACGGTCC---ACAGCTTCTCCTGCTGCAGTCCCTGGGGAGCCATCATGGTACCCA-GCCCCAC---TGCAGCATCCGGCTGTACC-GTCAGCTTCGAACTGGCTCTG-----------CACCCACCAGCA--TCTT---TCAGTTACTGTACAATTAATGTATAA-----------------------TAGGCTCTC--CTTCCCCAGGGCTCGCCTACCACATTCTC--CTCAGTGGCAGCCCACACCAGCCCACCAGTTATCCAGCCAGCTCACGGCAGGGCC-----CCAAGACTGCCCTG------------------CAATTAGCATGCT-CTTGGGGTACAACTCCCTTG---GGG--------------CACATGGTTTTACACAGCCTCTTGCAG---GTCTGTACTTC--------AGATGCTGACGG-----------------GCGTTCTAAAGTCAGCTCCCACTAGACCAGGAATG-ATGCAC---CGAGGAGGCGTCCCACGCA-CTGCTGCATCAGGCT-------TGCTCCCTCCTGTCTCCCAGAGG----------TGACTCCGCCTTTGACCTGTGTGTGCTGGA--------CCATCTGACCCAAT------GCCCAGCAGAGCAAAGCTTCTGAGAGGG---------AGAAGGCAGTGGA-CAGGGCAGAGGGCTGCTTTAAGGG----------------AAGTGGCAGCGAG a score=33266.000000 s hg15.chr12_random 132176 495 + 590431 GTATAAAATGCAGTATCCCCTAGGGACTTCTAGCCCCACGTGCACACT--TTCCAAAGGGGATGACCTCAGAGGAGGG------GCG-----TAGTTTCCTCACTTACGTCAAACAAACGGGAAGAAGAAGTTAAAGGGCAGCCTGGCATTGATGGCTGGTGGAGCTCTGAAGCCTGCCTCTGCAGGTGCAGACACATCCACAAAAGTAACCGCAGTGGAAATAAGAATCGTCCTTTCATTTCCTGAGTTGGCCTGTAATAAACAGAGAGATGCAAGGCCCACCCTCCAGTGTGCTCCCAGAATGACAACAATGAGACACTTTTCATTC-------TCTTCCTCAC--CCAACTACTGTCAGTTCATGAATCTGATAGGTCCTGGAGCACTAATTGGCCATTAACT----TGGATGAGAGA-AAC-AATTTTACCAGGGTGTCTGATTAACAC---------------GTGAA---TATCATAATTTT----CATGAGAATTTTAAAGATCCAATCTGAAC------CAGAATGCTAATGTAAGT-----AGAACC s mm3.chr5 119575792 468 + 149719773 GTTCA--------TGTCCTCTTGCGCCT--AGGGCCCAGGTGCGCACTGCCGCGGAAGGGAAGATCTTCAGGATGGGTACTCCTGCG-----GGGTCAGCTCA------TCACACAAACGGGAAGAAGAAGCTGAAGGGTAGCCTGGCGTTGATGGTGGGTGGGGCTCGGAAGCCTGCCTCTGCAGGGGCTGACACATCCACAAATGTCACTGCAGTGGAAATGACCACGGTCCTCTCAGGCCCTGGGAGGGGCTGCAAGGAAAAGACAG------------------AGTGGAC---------------------ACCCTCACCATCT-------CCTCGCTCACAGCCAGCTGCCCTAAGG-CAGGCACTAAGGCGGCTGAGGAGCGCTC---TGCCGCAGACCACGCTGGTACAGCAG-AGCTGGTCCAACCACAGTTCAGTGCTCACAA---------------ATAAAACCTGTCAGGCTTTTCCTCTAAGTACAAGTTAAAGAATTATCATGAACTT-TTTTAAGACTCAAAATTAAGTTAGGCATGATt s rn2.chr12 10253023 464 - 46874691 GTTCC--------TGTCCTCCTGAGCTT--GGGGCCCAGGTGCCCACTGCTGCCAAAGGGAAG-CCCTCATGATGGGTACTCACCCGTGTGGGGGCCACCTCA------TCATACAAATGGGAAGAAGAAGCTGAAGGGCAGCCTGGCATTGATGGTGGGTGGGGCTCGGAAGCCTGCCTCTGCAGGGGCTGACACATCCACAAATGTCACTGCAGTGGAAATGACCATGGTCCTCTCAGGCCCTGGGAGGGGCTGTAAGGAAAAGA----------------------GTCAGC---------------------ACTGTCATCATCTTCCTCACCCGCCCTCACGGCCAGC----CTGAGG---AGCCGCACGGCGGGTGAGGAGCACTA---TGCTATCAACTATGCTGGTCCAGCAGCAGC------AACCACAGTTCTGTGTTCACAAGAATTGTGACTGCAAATAAAAC-TGTCAGCCTTTT----TGAGTACAAGTTAAAGAATGATCATGGAATTGTTTCAAGACTCGAAATTAAGT----------- a score=71665.000000 s hg15.chr12_random 132805 660 + 590431 CCTTTAAACTAGGTT-------------------------AGGCCTACCTCAGGAAAGGAGGATGAAATTAGATTTGCAGTTACATTGACTATTTTGGCCTGTGGATTCAGCAGGGATCCGTATTTAGTCCACTTCACTTCTATAACCAAAGCCCCTGGGAGCTGGCAGGAATCCTGCAAAACAAAATGCTGTTAATCCATTAGAATCTTACAAAACTGCAAGTCAGACTTAATCTGCAGTTCAGAGTTTTAATTATAAAAGGTTTCACATATTACAAAATGTTCTGAACAAGAAAATGAATAGACTCTACAAGTTCAGATAAAAACAGCTT---AGAGAATATACGTGTTTTAAAGTAACTCAATGCCCCAAAAATATTTTTAACAGCTGAAGCGTAATTTTTCCATCTCCTCCTATTTCTAAAAATGCCGACATCACC-TGAAACTGCGGTAGTGCCAATACCCAACTGTGGACCATTTAGGGCCATAACTGCTCTAACTTCATCTACCTGTTTATAGCGGCCTCACAGA--CTTCAGGAAAGAAACTGGTGGGAGGGATGGAGGGGGAGAAATAATTATTAGCAGACAAAACCTGATTGCATGTCATGTTAAAATGCTCTAAGGGGAAATTTAAGTGCTTTCTTTTCATTTACCTAATTTCATCAATTGGCAATTAAGATGTGACATC s mm3.chr5 119576746 610 + 149719773 CATGTGAGCCACATTCCACCCCGTGGAGACTGTCGCCAGCAGGCCTACCTCTGGAA------CTGAGACGAGCTGGGCAGTGACATTTACTATCCTGGCCTGGGGGTTCAGCAGGGACCCATACTTAGTCCATTTCACTTCTATAGCCAAAGCCACCGGAAGCTGGCAAGAGCCCTGCAAGAGGAAACCAGATTAAACC---AGAATATTACACAACCACAAGTCAGACTA--TCTGCTGTTGAGCATTTTAATCATAACATGTTTCCCA-ATTACAGAGTGTTCGGAGCACTAGGGTGAACACGCCATACAAGTTCAGGTACAGGCAACTTCACAGAG------------CCTGACTTACT----------ACAGCATCCTGTGCT----------------ACCAGCCCCTCCTATTCCC-AAA--GTCAGAGTCACTGTGGAGCTGTGA-AGTCCCACTATCTAGTGGTGGGACCCTCAGGGCC------------------TCAACCAGTCCTTATCCACCTCAGAGATGTTTCTGGCCACTGGCTGGGGGTCAGCAGGGAAGACAAGAGCTTAACAGTGAAAAGATGAACTGGACTGTGTCTCATGTTAAAATG--CAAACAGGAAATACAGGCA-------TTCTTTCATCGAATTTCGCCATCTAGCAGTGAAGATACGGCTTg s rn2.chr12 10253894 622 - 46874691 ---TTGGGCCATACCCCAGCCCATGGAGACCGTTGCCAGCAGGCCTACCTCTGGAA------TTGAGATGAGCTGGGCAGTGACATTTACTATCCTGGCCTGGGGGTTCAGCAGGGACCCATACTTAGTCCATTTTACTTCTATACCCAAAGCCACAGGAAGCTGGCAAGAGCCCTGCAAAAGAAAACTAGATTAAACC---AGAATATCCCACAACCACAAGTCAGACCAACTCTGCAGCTGAATGTTTTAATTAGAAAATGTCTCCCA-ATTACAGAATGTTCAGAACACTAGGGTAAACGGGCCACACAAGTTCAGGTACAAGCGACTTCACAGAG------------CTGGAGTTACT----------AAAGCATCTAGTGCTAC--AAATGCCGTTTCACCAGCCCCTCCTAGTCCCAAAA--GCCAGAGTCACTGTGCAAATGTGA-AGTTCCACTACCCAGTGGTGGGACCTTTAGGGCC------------------TCGACCAGTCCTCATCCACCTCAGAGATGTTTCTGGACACTGGCTAGGGGTCAGCAGGGAAGA-GAGAATTTAACAGTGGGAAGGTGAACTTGCTTGTATCGCATGTTAGAATA---AAACAGGAAACACCAGCA-------TTCTGTCATCTAATTTCACCATCTAGCAACGAAGATACATCCTg a score=65713.000000 s hg15.chr12_random 133521 1294 + 590431 CAGGAACACTGCTGGTGCCACGAAGGAGCTGAGCTGCCCCTTTGGTTGGCTGCTTTGGCAGCCAGCTCTAAGGCCTCTGACCCAAGGGAAAAAGGGGCCGTGGGCTTTCCAGGGCTTTTTCCTGCCTTGGCAGTCTCTCCGGttggcaaatgtggtaactgttgaagctgcaggctgggtacgtggggact-ccatggtactattctacttttgtgtgtgtctgacattttttcattaaaaaaaaaaaGCTTTAAAATACATCTCTTCAGGATATGAAAACCTCACAGGCCTGCTAAATTTGGTGGCTGCGAAAAAAGCACTGATGGAATTCCTTAGCTTGGAACCGCC-TTTAAAAACCATGCAGACTGAACAATCCTCTCGAATACCCTGTTCTTAGG-----AGACAATGCAGCATGCAGCTGGTGGAAACTGAGTTTAGCAGGTGCTCGTGCCTGCCTCTACCTGGGTTGCCGGCAGAGTTGGTACAAAACCTGCTGCTGCAGGCCCTCTGAGCACCCAGGATCAGCACAGACCCTGACGGTGCCATGTGCGCACTGCTGCCTCTCCTCCCAACCCATGTCTTCCCTTCTGAGGAGGAGTAATAACTGCACATCTTCACCCATGGCCAAGAAGCCAGAAGCGATGTGCCTGGTT--CTGGTGGGAGAGTTGAGTCAAGACTTCGCAGTGGAACGGCAGGGACTGAGTAATCCCGGGTCTCTGCTGGCCTCGGTGGGAGGGCGGATCAGAGAAGTGAGCAGTCCTCACCCCCGTTATGCCCATGCTAGAAATATTCGGAGCGGATAATGAGAGGTCTGAAGAAAGCGTGACAAGAACAAGCTGGGCAATTACAGGCTAAGATGGAGAGCACGCCCCTGGCCAGGGCCGGCCCACACGCTGACTGCTAAGACAAAAGAAAAAGGTGGGCAGAAGCATCATGTGTGACCGGGAACCTATCTGTAGGATTGTCAACTTCCATTCAACTCTGTGAGGAACTGTGGCAGTGAAAACTCTCAGGTGTGGG----CTGCCTGTGTAGAACAGGGGACAATGGGTGGGAG--------------AGCCACATGC--------------------------ACGGAAGTCAGTCTCAGTCTTTG-----------------------ATACAGGACTCAACATTCGTCTA-------TCGTGTCATGAG-------------------------ATGCCTGGAGAG---------GGCTCGGGG--------------------------------------------------------------GACACCAGCAATCACAATGATG------GTAGCAACAG-------------------------------GATGAGGatcacag---------------aggttcccatttatggaccactaggc------------------------------accat--------gcccagggccacataaatgttacctcacttaaccctctcaat-gccccatgaggccattcactcactattgactagc s mm3.chr5 119577793 1199 + 149719773 CAGTAAGAGTGC-----------------------------------------------------------ATCATCTTCACTGAGGTGAATAGA---CTTTGGGCCCCCGGACCTTCCTCTTGC------------------TGATAACTGGA---ACTGCAGAAGCTACAGAGGGCAGATGAGGGGCCTGCTAAG---CTACAGTACTTGCCTGGGTGTTTTA-ATTTCCACAT-------GTATTTTTCTAAATTATGTCCT-----GGCTTAAAAAGCTAGCAGACTTGCTAAA-CTGGAGCCTGC--CCAAAGCAGTCGCGGGACTCCTTAGCTCACAAGTGCCATTTAGAAACCTTGTT-CCTCAACTGGCGTGCC-AATATCCCGTTGCTAGG-----AGCTGCTGCAG-GTGCAGTGGGTGTGAAC-------AGCAGATGC---------------CCTGGG-----------------------CCGGCTTCCCTTGGC--------------------------------------------------------------------------------------------ACTAATAACGG-GTGTCTTTACCCAGTGCCGCGAAGCTAAGAGCCATACCCCAGGTTCACTGG-----AGGCTGAGT--------------------ACAGGGGTTAAGCACCCCT-------------------TGGAATGGGGATCTAGTGAGGC------TCCTCTCCCCACTGAGCCACTCCTTATAAATATACAAAGCAGATAATGAGAGGCCTGAAGCAGCTGTGACAAGAAATAGCTGGGCAATTAGGGG--AGAATGGAGCGCACACCTCC-GCTGAGGACGGCCCACGCGTTG-CTGCTAAGACAAAAGGAGGAGGTGGGCAGAGGAGTCACGTGTGACCAGGAAGCTATTTGTAGGA-TGCCAGCGTCCATGAAACTCTTTGGGGAACTTTGGAATTGAAAGAGCTCATGTGGGGGTGGACTGCCATTACAGCCCAGAGGGCATGAAATGGAAGGAGTGGAGACAGGAGGCCACACCT-ATGTCCCTCTTGTCACCCAATGCTCGAGGAAGGCTTGCTGCATCACTGCCATCAAAGCTGACCGTCCTGGACTGGAGGACTGCAGGAAGGTCTGGAGGGCCTGATGTCCTGGGTTTTTGGAATATTTGCACAACCATGATGACTGAGAAA-TATATGCTGGCCGGGGAATCCGCTGTTCATGTCCACCTCTCACAGA--------------------------CAGTTTTGACAGTGGCCACCAC-ACGAGGCCATTGGTAGTAACATGAGGCCATTGGTTGGCATTAAACATGGTTCAGATTTGGATGTCACTCTTTTGGGTTAGGGGATTTCTCAACCATGTTCAACTATGG-------------TTCCATTTTACGGAGTGACCACTGTGTCCAGCCAACAGCCAAACAAGTG------------ACCCTCTGGATAACCCTGAGTGGCCAGTGATA--------GTTTCt s rn2.chr12 10255203 1121 - 46874691 CAGTAACAGTGC-----------------------------------------------------------AGCATCCTCACTGAGGTAGATGGA---CTCGGGGCCTCCGGACCCTCCTCTTGC------------------TGAGAACTGGG---ACTGCAGGAGCTGCAGTGGGCAGA----GGGCCC-CTAAG---CTACAGTACTTGCCTGGATGTTTCA-ATCTCCATGT-------ATATTTTTCTAAATTATGTCCT-----GGCTTAGAAAGCTAGCAGACCTGCTAAA-CTGGAGACTGC--CAAAAGCATTCACAGGATTCTTTAGCTTACAAGTGCCTTTTAGGAACCTTGTC-ACTGAACTGGCTTGCC-AATATCCTGTCGCTAGGTGAGGAGCTGTGGCAG-GTACAGTGGG-------------------------------------------------------------------CCTGCTTCCTCTGGC--------------------------------------------------------------------------------------------ACTAATGCCTG-GTGTCTTTACCCAGTGTCAGGAAGCTAGGAGCCATGCCCCAGGCTCACTG------AGGCTGAG----------------------CAGGGGTTAAGTGATTCT-------------------TGGAATGGAGGTCTGGTGAGGT------TACTCTCCCCACTGAGCTGCTCCTTGTAAATACACAAAGCAGATACTGAGAGGCCTGAAGCGGCTGTGACAAGAAATAGCTGGGTAATTAGGGG--AGAATGGAGTGCACACCTCC-GCTGGGGACAGCCCACACTCTG-CTGTTAAGACAAGAGAAGGAGGTGGGCAGAAGAGTCACGTGTGACCAGGAAGCTATTTGTAGGA-TGTCAGCTTCCATTAAACTCTTTGGGGAACTTTGGAATGGAAAGAACTCCCGTGTGGGTGGACTGCCATTACAGCACAGAGGGCATGGCAT-------------------GGCCACATCTCCTGTCCCTCCTGTCCCCAAATGCCCGAGGAAGGCTTACTGCATCACTGCCCTCTGAGCTGACCATC-----CTGGAGGACTGCAGGAAACTCTGGAGGGCCTGGTGTCCTGGG---------------------------GACTGAGAAAGTTGAAGATGGACAGGAAATTCACGGTTCATGTCCACCTCACACAGGAGGGCTAGAGATATTTCAGGGAGCCCCAGTTTTGACCACAGCTACCAT-ATGATG--------AGTAACAT----------GTTAGCACTAAAAA-GTTCCAGATTTAGATGTAACATT------------GATTTCCCAACCATATTCGACTATGGTGGTCACTTGTGCTCCCAGTTTATGGAGTGACCACTGTGTCC-GCCAACA-CCAAACAA------------------------ATAACCCTGTGTGGTCAGTGACA------TTGTTTCt a score=45188.000000 s hg15.chr12_random 134815 438 + 590431 gttcccatttcacagatgaaa---acagaggctcaaagccataaaactgctggccagaggcaacattgctaacaaggggcaaaaatcag-----tatcca----agattcagcc------------cgcgctccc---------actcagggcc-----atcctgcctccttAACAGCTGGCTTCCCCGGCTGCCTTCATCACACCACCTGGAAGACAGAGACCACTAGCATGGAACCTGTACCTTCT--C-CCCTTTACCTTCCTGTTGAATGACTGGGTGATGAAGTGGATGGGCACCCAGTCCAGCATGTCCTGGGCCTGGGAATTTCCAAAAGGGGCCACGTAATCTGGGAAGCCCTGGCCCCACAGCAGGCTCTTCACCTTCTGTGCTACGAGCTGACACGGGAGAGCTCCAGTCAGTCTTGGTGAAGGAAAAAGAAGTCAACTGAATGAGGCTGTTGTTCATCCACCAGCAGT s mm3.chr5 119579466 440 + 149719773 GTTTCCATTGCACAGGGACTG----CAGAAGTTTG-------AAAACTACTAGTCAAAGGCACT----GTGAGGAAAAGCGGAGCTGGGCAAACTGCCCAGTTTGGTTGCAGCCACTtccctccttctctccctc-----cctctctccctccctctggtccctccctccctcGT-----GCCTCCCCAGCCACCTGTGGCCCACCTGGCCCATGA------------GCAGGTGGCCAGCAGCCCCTCACACTCTTTACCTTCATGTTGGAGGAGTAGGTGACAAAGTGCACAGGCACCCAGTCCTGCACATCCTGGGCCCGGGAGTTCCCAAAGGCAGCCACATAGTCAGGGAAGGCCTGGCCTCTCAGCAGGTCCTGCACCTTCTGTGCCAGAAGCCCACAAGGGATGGTGCCTGTCAACCTTTGGGAAGGAAAGAGAGGCCGAAGGAGGGAGG-TGCTG-ACAACCTCCAAGACT s rn2.chr12 10256784 448 - 46874691 GTTTCCACATCACAGGGGAAGCAAACAGACGCTTG-------AAAACTACTCATC-AAGGCAC-----GTGAAGAGGAGC-GAGCTGGA-AACCCACCCAGCTTGGTTGTAGCCTTCTTCCTCCCTCCCCCTCCCTGAAACCTGCCTGCCTGCC-----TCCCTCCCGCCCTGGT-----GCCTCCCTAGCCTCCTGTGGCCCACCAGGCAGAGGA--AGGCACACTCGAGGGGGGCCAGCAGCCTCT--CAGTCTTTACCTTCGTGTTGGAGGAGTGGGTGACAAAGTGCACAGGCACCCAGTCCTGCACATCCTGGGCTCGTGAGTTCCCAAACGCAGCCACGTAGTCAGGGAAGGCCTGGCCTCTCAGCAGATCCTGCATCTTCTGTGCCAGAAGCCCGCATGGGATGGTGCCTGTCAACCTTTGAGAAGGAAAGAGAGGCCAACAGAGGGAGG-AGCTG-ACAACCTCCAAGACA a score=8357.000000 s hg15.chr12_random 135780 403 + 590431 TTCCATTCCTTCCCAGTTTCATTATCTTCTCATTCTCCAAATGAGGGATTATCTGACAGAAGCTAAAGAGTCTCTAACTTTGCAAAATCTTTACCTGTGAGATGATGAGTCTAAAACAGTGTTTCCCAAACTGTGTTCCACTG--AAGATCTGTACAAGAAGGgtttcatggccaaagttggggaagcattgaacctccacatccccatgtc----cctcctgaggcacatttgcctattaaaggctctgatgagtaatacaggaaggaaccattgttttaactttaatttggtgtttcccaaacgtattggaccacagacctACCCCTACTGATGTCTTGTGGAAATGTATTCCATGGAACCCTCTCCCTTTGAGAAATGCTGGTctaaatggatcagaactaataat s mm3.chr5 119579913 314 + 149719773 CTCTATACTTCT-------------ATCCTTCTT--------------TCCTC---CAAGTGCTGATGTGGCCCTGACTTTGGGGCATCCTGGTCATGGAGATG----GTCCAAAGCA--GTTTCCCAACCAGTGATCCACCATTTCTCCCTCTATGAACATTGTGGCATGGGCAGAAGCCAGGCAACACAGTGCTT-----TTCCCACATCCTGTCCTCCTAAAGGGTGCTGGAACACCA------------AGTTCCACAGGAGGGAACCA------------------GGGATTATCC--------TGGGCTCCTG-------CATCCTGGCATCCTGTGGC--AGTGTTTGGTGGAA----CTCTTAGGAAGCAACACTGATCTGA---GATCAGAGCTAGCAAT s rn2.chr12 10257239 252 - 46874691 CTCTACACTTCT--------------TCCTCCCTCTCCAAAAATGTGATCCTC---CAATTGCTGACATGGCCCTGCCTTT-GCACATCCTGGTCATGGAGATA----GCCCAAAGCA--GCTTCCCAACTTGTCTCCCACTCCCCTGCCCCCTCTGAACATTGTGCCATGGGCAGAAGCCAGGAAACACAGTGGCT-----TTCTCATGTC--------------------------------------------------------------------------------------------------------------------TCCTGGCATCCTGTGGCAAAGTGTTCGGTGGAA----CTCTTAGGAAGAAACACTGATCTGA---CAT-----CTAGCAGT a score=3956.000000 s hg15.chr12_random 136823 135 + 590431 ACAGATCATATTCAGGCTTCCTCTCACTGGTTTTGATGTGCTGTGTATATTAAAATTGAGAAACACAG-----GAAATATTGTCAGGGGAAATATTTTTGCTGTGAACTCAAATGCTAAACAACCTTAAAAATGAAACAT s mm3.chr5 119580436 134 + 149719773 CCACAGCACA-----GCTTTCTCTCAGTTGTTCTGTTGTGCTGTGTGGGTAAAAATT-AAAAATTCAGAAATAGAAGGATTTTCAGAGGAAACACTTTTGCTCAGAACTTAAATGCTAGTTGCTATTTGACCTTAAGCAC a score=40453.000000 s hg15.chr12_random 137614 518 + 590431 TTGTAACAGTTTTGCTACTATTCATGCATGATGATATACTATATGTGGCTTTCATGTGAGCTCATCAGCTGATGCAGAGATTTGATTAAAATGGGGAAAAGTGAGAATGCTTTGTTTTCTGATCAGCACAAGTTCAAACAGAAACAAGTGACTCTTTTACCTTAGTTTACAGCCAGATTGCATAGTGTAACCAAATAATACTGGGGTCCGGACCCCCTCCAGTGCTAAGCAGTCTTGCTCAGTTGTGCTATGAAGAATAGTAAGCTGTCCATATCTATTTGTGGTCTGAATAATCCCAGACATTCACAGACAGTTAAGGGACAACTGCCTAGTGCTAGAGCAGCCTGGTTCTCAGGTAAGAAGACAGTGTCACTTGTG-----TGACATGAGGGAGACCCAAATACACTTTTTCTGGGCCTCTGGGATTTTGACAGCTATTTCCCAGGAGCAGGCAAAAA----AACAGTTCTATTTTCCTTAATAAATGGATTCTCAGAAGAAAAATTCTCAGAAACTGGCCCTTT s mm3.chr5 119580606 388 + 149719773 CTGCGGCACTTGTGCTAGT-----------------------------------------------------------GACGTGGTTAAAATGGAAGGGTGTG---------TGCTCTCTGCC--------------ACAG-----------TCACTCACCTGAGCTGACAGCCAGACTGCACATTGTAGCCAAATAGCACAGGGGTGCGAAGCCCCTCGCTGGCAAGGCAATCCTGCTGGCTCGTGCTACGAAGAATAGTAAATTGGCCTTGTCTGTTCGTTGTCTGAATAATCCCAGATATTCACAGGCTGTTAAGGGACAGTCAAC-AGTT-CAGAGCAGACAGACTGTCTAGGAAGAAAATGGCATCATGCGTA---------CTCAGTGAGAC-CAA----GCTCTTCCCAGCCCC------------TGGCCTGTTACCAGGAAGGGGCAAACATGCCAGTAAATC--TCTTCCTTGAT---TGG---CCCA----------TCTTCGAAACTAGTTCCAg s rn2.chr12 10257706 396 - 46874691 ctgtgacgcctgtGCTATC-----------------------------------------------------------GATGTGGCTAAAGCTGAAGGATGTG---------TGATCTCTGCC--------------ACAG-----------CCACTCACCTGAGCTGACAGCCAGACTGCACATTGTAGCCAAACAGCACAGGAGCCCGCTGCCCGTGGCTGGCCAGGCAGTCCTGCTTGCCTGTGCTACGAAGAATAGTAAGCTGGCCTTGTCTGTTCGTTGTCTGAATAATCCCAGACATTCACAGACTGTTAAGGGACAGTCAAC-ACTTCCAGAGCAGTCAGACTGTCTAGGAAGAAAATGGCTTCACGCATGCTGTGAGACCTGAGTGAGACGCAG----GCTCCT-CCAGGCCC------------TGGCCTATTACCAGGAAGGGT--AACACGGCAGCAAATC--TCTTTCTTGAT---TGG---CTCA----------TCTTCCAAACTAGTTCCAg a score=84178.000000 s hg15.chr12_random 138276 1156 + 590431 AAAAAAAAAGGAGATTAAAAAAAAAAA--AC------------ACTGACATTTTCCCAGGACGTGCTGTCTCACCCCCAACTGCCAGTCTCCCCCCAGCCCA----------CCTGCTGTGTAGC----------CAGAC----TGGCCGCCCACCAGAGCCGCCTGCAGGAAGCTCGGCCTGGACTGCTCTCTCCTTCCCACAAGCAGCCCAGGGGAGCCTCAGCGATAAAGAGCAGTGCAGCCCACGCACATGGAGAGA-GAAATAAATCCACCCTCTACAGAACC----AAAAAGGATATCCCTTATGAGGCTGGAATCCAGCAGCTAATGGGAGCCCCACGACATAACCAGGGTTTCCACTGAGAGGGACTGGCTGGGTATTTTCCTGAAAGACAATGCAGAAATGCCCCCAAATAATTCTCATTTTAATAAGGAAATGGCAGGAAGAA--AAATTCTTCTTTCATAATAAAATATGGAATTACCAACCAATAAAAGAATTTCTCCCTCCCTACTCAGAACTATAAATACATCTGCCAGGTGTAGGAGTACATCATACTGTAAAAGAACAAGCTAATGTGGAAGGGAATCTTTTCCCAAAAGGAAAAAAGATACAAGGAGAATGCTTGGTTTCATTACAAATGCACAGGCTACACAAAGCCCTCTGTTCACTACAA---AGGCTTGGA----TGTAATACTTAGAAATT--CAGTTTTATCCACTGAGAAGTCATTATTTCTTTTTAACTTGGCAATTAAATACTTATGCCAAATTGATCAACCTTACCTGAAGAAAATGAATTTCAAACTTTTGCTGCAGTGGGACCACTACGCTGCTAACTGTCCCCAGAACGAATGAGAGATCAGCTTTGGTGACTTCACCTGCATCTGTGTATGTGAGGCTGTACTTTACCTAAAAACAAAATGATACTCCAAATATACCTGTTCCATTACATTTCAGAAGCTGTATGAATAACT----GAAAACACCCATAGATAGCAAATCTTTCCCTGTTTCTCCAT-GTGTTGAAGCCTTGCTCTGCTGTCCAGTTGGATTATGAGAGGTGTTCCCTCAGCACCACCCCTAGCAGACAGGGTCATCTGAGCCACTCTG---CCCAATTACAGAAGTTCCACA-TAAGCTGGTCCAAGCAGAATGCAATAAGCCTATCTCTGCAGAGGAAACATGTTAAAACAA--AAACAGCAACAACA s mm3.chr5 119581515 957 + 149719773 AGTGAACAAATGAATCAAAGAGTCAAA--CCCTTCTACATCTAGCTGTCCTTTTAAATGCAC-TGCCACCTTCCCCCCAAGCACCAGGCTCTCCTTAAAC------------ATTCCAGTGGCC-----------TGGAG----TGGCCAGTCA---------------------------------GGTATCTCTTTCCCATAGGCTACC----------------------------ACAGCCCACCCATGCAGACAGG-AAGGTGA---CTTTCTCTGCGGACCT---CCAAAAGGATACCCCTTCTGAGGCTGAAAGCCAGCAGCCAGCGGGAGTCCCACCCTGTAACCAGGGTTGCCGCTGAGAGGAACAGGCTTGGTGCCATGCTGAAAGACAAGGT---GATGCCCCGGG-------CTACAGTATTTAGGTACAAGCGGGGGCAACCCAGTGCTTC--TCACTGTAACATCTGG----------------AAGAACAGCTCCCT--CTGTTCTCAAGTATAAATAGATCC-CGGAGAGTGGGAGGACAGCACTCGGTGAG------------------------------CCTGCCAGGCA---------CGGGACAGCACCCGGCTTC------------CAGG-----CAAACCCCACA-GCTCCTGCAGCGCAGCCTGGGAGCTGGGTCATGCTTCTAGACTGACGGTGCTGCCCCC--AAAAGCCAGGCTT--TTCTCCATCTGCCATCCACG---------CAGATCTCTCAGACTCACCTGAATAAAGTGAATCTCAAACTTCTGCTGCAGGAGACTCACAGCGCTGCTCAGTGTCCCCAGAACGAGGGAGAGGCCGGCTTCGTGGATCTGGCCTGTGGCTGTGTACAGCAGACTGTACTTCACCTGAGAT-GGAATGGGGC--------------------------TCAGCAGCCATGTTACCAACTCTAAAGAGGCAGCCACAGAAAA------------------GTCAC-GCCCCCAAGC------CTGCTGTCTAATCACATTACTC---ATGTCCCCTTAACA----TCCCAGTG------GTCACCTTGGCCTCTGTGTACTCAGGTTTTTGACATTTTAGATTCAGCTGGCTCAAACACAATAGGAACAGTCTATTTCTGCAGAAGAAATGAGTCCAATCAAGTAAACAGTGGTGACA s rn2.chr12 10258425 993 - 46874691 actgaataaaTGAATCAAAGATTAGAAGAACCCTCTGCCTCCAGCTGTCCTTTTAAATGCAC-TGCCATCTTCCCCA-AAGCACCAGACTCCATTTAAACCAGCCGTGCCACATTTCAGTGGAACGCGCTTTCAGTGGAAGCTCTGGCCAATCA---------------------------------GGTACCTCCTTCCCATAGGCCGCCCACAGCGTCTCTGGCAACAAATGGAAGCACGGCCCACC-ATGCAGACAGGGAAGGTGA---CCTTCTCCACAGACCCGGAAAAAAAGGATACCCCTTCTGAGGCTGAAAGCCAGCGGCCAGCGGGAGTCCCACTCTGTAACCAGGGTTGCCACTGAGAGGAACAGGCTTGGTGCCATGCTGAAAGACAAGGT---GATGACCTGGG-------CAACATTATTTAGGTAAGAGCGGGGGCAACACAGTGCTTC--TCACTGTAACATCTGG----------------AAGAGCAGCTCCCT--CTGTTCTGAAGTATAAATAGATCC-CAGAGAGTGGGAGGACAGCGCTCTGTGAG------------------------------CCTGCAAGGCA---------TGGGACAGCACCCGGCTTC------------CAGG-----CAAACCCCACACATTACTGCAGCTCAGGCTGGGAGCTGGGTCATGCTTCTCCACTGTCAGTGCTGCCCCC--AGAAGCCAGGCTT-----------------------------------CCTCTCAGACTCACCTGAATAAAGTGAATCTCAAACTTCTGCTGCAGGAGACTCACGGTGCTGATGAGCGTCCCCAGCACGAGGGAGAGGCCGGCTTCCTGGATCTGGCCGCTGGCTGTGTATAGCAGACTGTACTTTACCTGGGGA-AGAATGGGGC--------------------------TCAGCAGCCATGTTACCAACTCCAACAAAGCAGCCACAGAAAG------------------ACCACAGCCCCCAAGT------CTGCTGTCCAATCATGTCACTC---GTATCCCCTTAGCA----TCCTAGTGGACA--GTCACCTCAGCCTCTCTGTACCCAGGGTTTTGACATTTCAGA-TCAGCTGACTCAAGCACAATGTGAACAGCCTATTTCTGCAGAAGAAATGAGTCCCATC----AAATGGTGGTAGCG a score=47285.000000 s hg15.chr12_random 139432 529 + 590431 AAAATATTTTGATGTATTCCGGCAAGTCACTAAGTTTGTGGAGAC-----AAGAGGTGTCCTTTGATGAGACAGCAGAAAGACAAGCAGGCAGCTGA-------GCCAAGAAAAGCCACACCATGGGCTGGGACA-GAGCGT--CCTCGGAGGGCGTCCAGTTACCCCGGCGCAACAAGAGGCTTAAGTCTGCCA--CAGA-CAAGCTCTCAAAGCCAAACTCGGCACCTACCTCAAGAACAACATTCACGCAAAGGCTAAAGTGTCCAGCGTTGACGAGAGTCGGCTGCAGCACATCAGTGTCCTCCCGTCGGGTGAGCGTTTTATTTAGAGACTGAATGACGATGGACTGAACAGTGATAGGGACCTGCAGAGTGAAGAC---CTGGAGTGTTGAAGATG----CTCTACC---CAGGGAGGATGGGCTA--------AAATAACCAACCAACTGGAAAGAAACCTCCCCtgatat--atggccaagtaggggg-aagcat-gctacacaacagtgtatatactatg-atccacatttgcaaaagtaataaacatatatacattcaca s mm3.chr5 119582813 544 + 149719773 AAAACATTTTGATGTATTCTTACAACGTGTCAGGTTTATGGAGACCTGTAAAGACATGTCCTCTGACGACAGGGCAGAGCAGCAGA--AGCAACTGGAGGTCAGACCAAGAAGGGTATCAGCATGGTATGGAGCA-CAGTGCC-CTCTGGACGGTGTGCCGTT-CCCTGTGCC--CCACAGGCTGGAGTCAGGCAGTCGGA-CAGGACTGCAGAGGCACACTGGATGCCTACCTGGAGAACAACGTTGCTGCAGAGTCTGTCTTGCCCAGTGCTGACCAGAGATGGCCGCAGGACACCATGGCCTTCTAACTGCGTCAGTGTGTGATTCAGAGACCGATACATTACAGACTGGATCTTGATGGAGACCTG-AGAGGGAGAGTATCCTTGGGTA-TGAGGCTA----CCGCATGTGACATAAAGCACGGGTGA--------CAGTACCCAG--AGCCTAAAATGAATACTTAGTGACAGCAAATGCAAAGCAGGGGACACACAC-ACTGCCACACGCTGTGCATGCTGTAAACTCACTCTTGCAAGAGGAC-AGGTATTTacacacacaca s rn2.chr12 10259801 555 - 46874691 AGAAAAATGTGATGTATTCCTGCAAGGTATT-GGATCATGTAGACAGGTGAAGGCCTGCTCTCTGGCGGGAGAGCAGAGCAGCAGG--AGCAGCTGGAGGTCA-ACCAAGAAGAGAACCAGCACGGTAGCGACCAGCAGTCCAGCAGGGGAAGGTGTGAAGTTCCCCTGCAGC--CAGCAGGCTGGAGTCAGGCAGTTGGAGCAAGACTGCAGA--CACACTGGATGCCTACCTGGAGAACAACGTTGCTGCAGAGTCTGTCTTGCCCAGTGCTGACCAGAGATGGCCGCAGGATACCACGGCCTTCTAACTGGGTCAGTGTGTGATTCAGAGACCGATACATTATAGACTGGATCTTGATGGAGACCTG-AGAGGGAAAGTAT-CTTGGTCA-TGAGGCTACCAGCCACATCCGACATACAGCACAGGTGACCCTGTTCCAGCACCCAG--AGCCTAAAATGAACACTCAGTGGCAGCAAATGCAAAGCAGAGGACACCCACTGCTACC-CACACTGTGCACACAGTGCACACACCTTTGCAAGAGTGA-AGGTATTTCCGAGcacaca a score=4495.000000 s hg15.chr12_random 145161 72 + 590431 CTACAATGTAT--------------TAATATGGGAAATCTACAAGATACAGTAAGTAATGAAAACAATGACTCGAT---GTCATTTGTT s mm3.chr6 4764313 66 + 149950539 CTACAGTGTCT--------------TGACGTGTGCATTCTGTAAGATACAATGA-----GAAGGCTCTGACTTAATCTG----TTTGTT s rn2.chr4 28581136 83 + 183307734 CTACAGTGTGCATTCTGACGCGTGCTGTCGCGTGCGTTCTG-ACGACACAGTGA-----GAAGGCGCTGACTTACTTTGGTCGTTTGTT a score=23705.000000 s hg15.chr12_random 153414 394 + 590431 TGACTTTCTACTTGGAGAATACTTGGATTGAACTTCTTAGCTATTTGGATCTTAGACAAGGCATCACAAAATCAGGGAAGGCTCTACCTAATAAGTTGTACTAACATCTTACTAATGCTGGTCTACAAACACAGGCCTGTATGTAGCAGCCAATATTTTTCCTA-GAGCGTGGTTTCAATCTTTGGAGGTGGAAGCTGTTCGGGGACAAGCAGCCCCCAGCCCCTGCTTTTAACAGAGCTGTTCTGATTTTATTCATTTTACATGAGGCCTCCAATATTATTTTGTTTGATGGGTTCCACCTGTCAAAAAAGTTCGACCAGCATTGTCTTAAGAGGAATTCTGGTTTTCTGGAGTGGAGAATGCAGATCACTTTCTCAAAACTTTCATTCTTGTg s mm3.chr5 30202488 293 - 149719773 TGCCTTGCTGCCTAGGG----CTAGGCTTGGACTTCCTGGTCCCTTGGCTCCTAGACCCGGCATCACACAGTTGGGG-------------------TGGGCTAACCTCTGCTCAACACTCACCTAC--ACACGTGTCCTCAAGCGGTAGCTTGTATTTCTCTGACGACAGTGGCTTCGGTCCCTTGTTGTGGATGGTGTT-----GCAAACTGCC-----------------------CTGT----GTTCTATTCATTTTACATATGAGCCTTAGGTTGGTTCTGTTTGAAGGGCTCCGCCC----------CTTGGC---------------------------------CAGTTATGAATACAGATTGCTGCCCC-TGGCCTTTGTTC-TGCA s rn2.chr12 36658853 304 + 46874691 TTCCTACCTGCCTAGAG----CTGGGCTTAGATTTCTTGGCCACTTGGCCTCTAGTCCAGGCATCACACTGCCGGG--------------------CGGGCTGCCCTCTGCTCAGCACTGGCCTGT--ACCCATGGCCTCAAGCAGCAGCTTGTATTTCTCTGACGACCGTGGCTTCGGTCCTTAGGCATGGACGGTGGT-----GGCAACAGCC-----------------------CTGT----GCTTTCTTCATTTTGCAAATGAGCTTTAGGTTGGTTCTGCTTGAAAGGCTCCACCC----------TTTGGCCAGCACTG---------------------TCTGCAGTTACGAATACAGATCGATGCCGC-TGGCCTTCACTC-TACT a score=5884.000000 s hg15.chr12_random 154097 56 + 590431 -CTTTCAT----------------TCTAGCAAGATTATATTGACCTCAGCAAGATTATGGCTTCTAAAAATAA s mm3.chr5 30202781 72 - 149719773 -GATTCACAAAGCTGAGACGGAGACCAGGTGAACTGGCAGTGACCCGAGAAAGATTATGGATCTAAAAACTAA s rn2.chr12 36659157 73 + 46874691 GATTTCCCAAAGCTGAGATGGAAGTCACGTTAAGTGGCACTGACCTGAGAAAGACTATGGATCTAAAAAGTAA a score=667.000000 s hg15.chr12_random 154153 72 + 590431 AAGTATAAAAACACAG---CATTCA----TG---GCA-ACCAAAATGTGCACCCAATGAGTAATTTGCACTGCAGCAAATCTT s mm3.chr5 30203147 79 - 149719773 ACGTGTGTATACACAAGCACATGCACTCGTGTGAGCACATGCAAGTGTGCAAACACACACACACTTACAC----ACAAATCTT s rn2.chr12 36659519 65 + 46874691 ACATGTGCCTACAGGAG--CATGCA----TGTGAGCACATGCATGTGTGCAAACACACAC------GCAA----AGAAATC-- a score=15723.000000 s hg15.chr12_random 154308 213 + 590431 GCAGATCTGAAACCAATCTAAGCCAAGCTAGTGAGTAAAATCCAGCTAACC----CTGTGATCCACGCTGAATCTGGGTCCTTCACTTATGCTGGACAGCCTCCTGAGCGGAGGACCA---TGTGAGT--------------------------------CTACGATCTGTCCATTCCACCTCTC---------AATCTGAAGGGCAAGCACTAGA--GAAGATATGTGGTGTTTGTAGGTCAGTAATCAAAACTTGGGAAGg s mm3.chr5 30204603 239 - 149719773 GCACAACTGAAACCCATCCAAGTCGGGCTC-CCAGCTACATCCACCCACCCCAGACGTTGGTGCCCGC---ATCTTCCCACTGCAC---AGCTGCAAACCCCTCTGACtggggcgtgggagtgggggtaggggttggggtgggggtggggTGGACGGAAACTCCAGGCTATCAATTCCAACTCTCTTAATCTCCAACATTGACACCAGGCACCAGAGGGAAGCTATGTGGTTCT-----GTGAG------------TCGAAGG s rn2.chr12 36660945 211 + 46874691 GCAGACCTGAAACCCATCCAAGTCAGGCTC-CCAACTACATCCACCCACCCCAGACTGTGATGCCTGC---ATCTTCACATTTCGC---AGCTGCAAACCCCTCTGACTGGGGT-------TGGGGGT---------------------GTGGACGGAAACCACAGGCTGTCAGCTCCACTTCTCTTAGTCTCACATGTTGGCGCCGGGCACCAGGAGGAAGCTATGTGGTGCT-----GTGAG------------GGGAAGG a score=29547.000000 s hg15.chr12_random 154811 419 + 590431 TTGGGAAGTGATTTCATTATGGTAAACTAACAGCAG---GTATGGAACAGGACTCCTTGAGGGGCTTGTGGAGCTGGTGAATGAGCAAAGCCCCATCAGATGGTAAAAATCTTCTGCCAACCTCAGCAAAAACACCCTTTATCCCACCCGCTCCCTCTGCCACACCTACCTAACTTGCCAG-------GGAAAGGTC--AAG---CCAGTCTGTCCAAGAATATAACGACCAGTTTACTGTTCTCTTGTTCACCAGCCCTGAACAACTGGTGTGTGGGATGGTCCTCTCTGGGAGACATGGTGTTTGATACTGTGCTAATTGGGTGGCTAGAAAAAAAAAAGGAATACGCACTTTTAAGTGACATTTTAGAATTGTTTCAAGAGTGCACCAAATATGCATTTTGGCTGAATGAGTATTAAAATCAGTATTTGGT s mm3.chr5 30204842 348 - 149719773 -AGGGAAAT-------CCATGCT----TCGCAGCAGCAAGT---------GACT--------------TGGCGTT----------CAGACCC-------------AGAA---TCTCACTTCCTCAGGGAGGAGCCCCTCCAGCCCACCTGCTGTCCCTGCCTCA--GGACTGTGGTAACAGAAAGGCTGGGAAAGCC--AAGCCGCCAGGCTGTCCAAGAACATAATGACTAG------GCTTACTCACTCACCAGCCCTGAACAAC-AATGTGTGGGCTGGCCCTCACGGTG-TACACAGTATCTGCCACTGTGTTAATTGGATGGCCCG-GAGAGAAAAGGAGGAAGTGTTTTTAAATGGCACCTT-CAATTGCTTCCAGATTATATC-----------TTGGCTAAGTGACTATTAAAATTAGTACCTGTC s rn2.chr12 36661156 316 + 46874691 -AGGGAAGT-------CCATGCT----TGGCAGCAG---GT---------GACT--------------TGGGGTT----------CAAATTC-------------AGAA---TCTGACCCCCTCA---CAGAGCCCCTCTACCCCACCTGCTGTCCCAG---------------------GAAGGGCTGGGAAGACTGAGAGCCACCAGGCTGTCCAAGAACATAATGACTAG------GCTTACTCACTCACCAGCCCTGAACA---AGTGTGTGGGCC-GTCCTCACCCTG-TACACAGTATCTGCCACTGTGTTAATTGGGTGGCTGG-GAGAGGAGAGGAAGAACTGTTCTTAAATGGCACCTT-GAATGGCTTCCCTATTACATC-----------TCGACTAA------ATTAAAATTAGTACCTGTC a score=8711.000000 s hg15.chr12_random 159779 75 + 590431 ACCGTGT---GGTTTCCAGAGCAATTTATTCAGGAAAATCTATTCAATATGCCATCAACAGTTCTCCTGTGTGT-ATTG s mm3.chr17 29870857 73 + 93529596 ATTGTGT---TGTTTCCAACTTGATTTAATCACAAAA--CTATTCCCCACGCCATAAGCAG-TTTCCCATATGTGACTG s rn2.chr20 10001236 76 + 54947872 ACTGTGTAGCTGTTTCCAATGCAATTTAATCACAAAA--CTGTTCCCCATGCCGTAAGCAG-TCTCCCACATGCAATTG a score=247927.000000 s hg15.chr12_random 159854 1545 + 590431 -TGCTGATAAATAGACACTGAGAAGATTTAACAAGTTCATCATTTAATAAGTCTGAATTCATTTTCACCACACGGTATTGTACACGGTCATCTGTTGAAACAGATTTCTTTTTTAACAGATCTTAGTTTAAAAAAGTCATAGGTACTGTGAGTTCTGTATAAACTGGTGGACAGTAAGTTAGTTCCTTTGTTTTAACTTATAAGCCTCAACTTCACCGCAGAATAAAGAATGTAGGCCAAAGAAAGCATAATCGGTCACTCGTATAGAACAGTATTGTTTCTATAATTTGAAGCTTTCTGAATGGACGGGTTCAGGCCTGATGCAACTGTAAAAAGATTACTTAATGAATAGACTATATGGAAATTGTATAAAATGTTATTACCTTTTATCGTTAGTAGCTTAAACAGCACTATATCACTAATTGCTATTCAAAATCAAAAACCTGTTTTT----GAATCCCCAAGAAGG----CAGCATGTGTATACAACCAT---------ACCACCTTGTACTTAGGGGTGTGTCAAAACATAATTCAACAGAAACTTTGGCTTTAGGAAAGAGTCACAAATATTTAAAAGAATGGCTTT-GTCATT--TTAAGTATACGGTCGGGGAAAAGTGTGCTTTAATTAAATATACATCATACCAGTGATGCTGGCAAGGTTGAAAGTTACTCCTAATGTTGATAGCTATAAAAACTAGTTTGTACATAACAAGACAATGAGAGGAAAAAGCAATCCCTTTGAAACAAAATTCTCAAATAAAAAATGTTCACAGTGGTTTGTATCAACAGTATGCATTTTATGACAAGAACATGTACAGATTCAGAGCACCCTAGGGCTCTCTTTATGTCCTAAAGAAAATGAGCATTTACATGATT-ATGGGTTGTACTGAATT----AAAAAAGATCAATTGTACACTTACTCCTCAGACAGGATAAACTGTCCTGGGGTGTACAGCTTTAACACCATCATTAAAATTGTTTGCAAAAGGAACAGAGAAT--TAAAAAACAAAACACTTTTCTTTTTGGAGTGAAGAGTCTTTCATTTGCTGTTATAACCAGCAAATGCCATTCACTAAATCAAA-AATGGAAGGAAGGGCCCCCACAAACACAGATCTATCTGAGCAAGCTGACCAGTACACATTACAGTCTTAAAAATGAAGGTTATATACTCTATGTTACAAGTCCCGACTAGGCAGTGTCAAAACGACATCTATTTCTTTGCTTGCTTTGTGATCATACCCCTTGGAGGCGTTACAGGTCTCGTGGCATTTGGCTTCTTTTTCTCTGCAGGCTTTAAAATCTG--GAGATTC-AAAAGACAGTTAATTTAGGAA--ATATACTCAACCCCAAATCTTAAGAGTCCTTAAATTTC--ATTCAGATCTTCTGTTCAGATGGTGTTCACAACTGCCCCAACAACTGTAAAAGCCCCCCTAGCATATTAACACAAGCTATGTTGAATGTAAACATT-TGGTAATTAA-CGCTATGACGAACAGATAAAATCTATTATCTGGACAAATTATTTTGCCTCTGAGTATAATGACAATCTTCTGAAGTCTACACCT s mm3.chr5 30209575 1486 - 149719773 -TGCTGACAGAAAGACACGAACAAG--TTAACAAGCTTG-CATTTAATAAGTCTGAAACCATTCTCAGCACATGGCATTGTACACGGGCATCTGTGCAAACAGATTCATTT---AACAGGTCGTAGTTTAAAAAAGTCATAGATACTGTGAGTTCTGTATAAACCGGTGGACGGCAAGTTAGTTCC----TTTTGATTTATAAGCCTCAATGTCACCGCAGAATAAAGAATGTA-GCCAAAGAAAGCATTATCGGTCACTCGTATAGGACAGTGTTGTTTCTATAATTTGAAGCTTTCTGAATGGACGGGTTCAGGCCTGATCCAACTGTAAAAAGATCACTCAGTGAATAGACTATATGGGAACTGTACAAAGTGTCATTAACTTCCATCATTAATAGCTTACTCAGCACTATACCACT-ATTGCTAGTTAAAAT----AACCTGCTTCT----GAGGCCCCACGGAGGGAGGCGGCCTGTGCACGCAGCCTCGATGCCCTGGCCACCTCATCCCCA-GGGCGTGCCA---TACAGTCCAACAGAAACTTTGGCTTTAGGAAGGAATCACAGACATTGAAAAGAATGGCTTTAATCATTA-TTAAATGTGCAGT-GGGAAGGAGTGTGCTTCAGATA-------GTCTGGGCAGGGCTGGCGGCAGG----CAGGTCACTCCTGCTGCC-ACAGCTGCAGACACTAGTTTGTACATGACAAGACAATGAGGG---AAAGCAGTCCCTTTCAAACAAA---CTGGAAAAAAAATTGTTCACAGTGGTTTGTATCAACAGAATGCA-TTTATGACAATTACATGTAGAGACTCA-CGCACTCTAAGGCTCTCTTTATATCCTAAAGAAAACAGGCATTTACATTATTCATGACTTATACTAAATT---AAAAAAAGATCAATTGTACACTTTCTCCTCAGACAGGATAACCTG--CCAGGGTGTACAGC-TTAACACCATCATCAGAGCTGTCCACAAAGGGAACAGAGGTT---------CAAAACAAAATGCTCTCTTGAGAATGAAGTGCTTGGCTTGCTGCTATAACCAGCAAGTGCCAGCAGT--AATCAAA-TGGAGGAGGGCCCGACA-------GACAGGTCTACCTGGGCAAGCTGACCAGCACA--TCACAGT-TTAAAAAGGAAGGTTATGAACGCTATGTTACAAGTCCCAACCAGGCAGTGTC-AAGTGACATCTATTTCTTTGCTTGCTTTGTGATCATACCCCGTGGTGGTGTGACAGGTCTCGTGGCGTTGGGCTTCTTTTTCTCTGCAGGCTTTAAAATCTGTAAAGAGGACAAGAAAGAAGAACCTTAGGAGAGCTATACCTGGACCTCAGCTCTG------TTCAGATCTCC-ATCTAGAAGTTCTG-CCTAATGCTGC-------TGCCCCCTAAATGCTGAAAAGCCCTCTAGAACA-TACCCTGGACCGACTGGTCCCTGAGCATTTTGGTGGAGAAGTGCCATGACATACAGCCAGAATATGTGATCTGGAAAACAGTTTCTGC--TGGGGCCAAGTGACAAACTC---AAGTCTAGAGCT s rn2.chr12 36664235 1496 + 46874691 TGACAGACAGACATACACGGACAGG--TTAACAAGCTCG-CATTTAATAAGTCTGAAATCATTCTTAGCACATGGCATTGTACACGGGCATCTGTGGAAACAGATTCATTT--TAACAGGTCGTAGTTTAAAAAAGTCATAGATACTGTGAGTTCTGTATAAACCGGTGGACGGCAAGTTAGTTCC----TTTTGATTTATAAGCCTCAATGTCACCGCAGAATAAAGAATGTA-GCCAAAGAAAGCATTATCGATCACTCGTATAGGACAGTGTTGTTTCTATAATTTGAAGCTTTCTGAATGGACGGGTTCAGGCCTGATCCAACTGTAAAAAGATTACTCAGTGAATAGACTATATGGGCACTGTACAATGTCTCATTAACTTCCACCATTAATAGCTTACCCAGCACTACATCACT-ATTGCTAGTTAAAAT----AACCTGCTTCTTTCTGAGTCCCCACGGAGG----CGGCCTGTGCACGCAGCCTTGGTGCCCTGGCCACCTCATGTCCA-GGGTGTGCCA--ATACAGTCCAACAGAAACTTTGGCTTTAGGAAGGAATCACAGACATTGAAAAGAATGGCTTTAATCGTCAGTTAAGTGTGCAGT-GGGAGGGAGTGTGCTTCAGACA-------GCCTGGGCAGTGTGGGTGGCAGGGTGGCAGGTTGCTCCTGCTGCC-ACAGCTGCAGACACTAGTTTGTACAGGATGAGACAGTGAGGG---AAAGCAGTCCCTGTCAAACAAA---CTTGGAAAAA--CTGTTCACAGTGGTTTGTATCAACAGAATGCA-TTTATGACAATTACATGTACAGACTCA-CGCACCCTAGGGCTCTCTTTATATCCTAAAGAAAACAAGCATTTACATTATTCATGATTCATACTAAATTTAAAAAAAAAGATCAATTGTACACTTTCCCCTCGGACAGGATAAACTG--CCAAGGTGTACAGC-TTAACACCATCATCAGAGCTGTCCACAAAGGGAACAGAGGTTAAAAACAAACAAAACAAACCGCTTTCTTGAGAATGAAATGCTTCACTTGCTGCTATAACCAGCAAGTGCCAGCAAT--AATCAAAATGGAGAAGGGAGGGCCC-------GACAGGTCTACCTGGGCAAGCTGACCAGCACACATCACAGT-TTAAAAAGGAAGGTTATGTACGCTATGTTACAAGTCCCA-CTAGGCAGTGTC-AAGTGACATCTATTTCTTTGCTTGCTTTGTGATCATACCCCGTGGCGGTGTGACAGGTCTCGTGGCATTGGGCTTCTTTTTCTCTGCAGGCTTTAAAATCTGAGAAGAGGA-AAGAACCAAGAACCTTAGGAG--CCATACCTGGACCTCAGCCTTG------TTCAGAGCTCCCATCCCGAGGTTCTG-TCTGATGCTGC-------------CCCAGTGCTGAAAGCCCCTCTAGGACA--ACACTGACCCAACCGGCACCTGGGCACCGTAGCGGAGACTCGCC-TGATGCACAGGCAGAACGTGTGACCTGGACAACAGTGTCTGC--CTGGACAACGTGACAAACTC---AAGCCTACAACT a score=131998.000000 s hg15.chr12_random 161903 1568 + 590431 TCAACACTGGGAAAAGGTGCCATAATTAATTTTTTCTTTTACAAG-------GGATCCACACATTATTCAACTATAATACACACTGGTTAAGGGAAAATAAAAACTTAGCCTACTCAGCATAAGTGAACACTAGGCAAAAAGTAGCAATTATATTTTTCAATCAGCAAAGTGTAAACATATTAAAAGGAAATCATGTTGAAAGCATGCT------CTACCTGAAAAGAACACATTAGTGTTTCATCCACACTCATCATGGCACCTGCATTGTCAAACTCTCCGCAATAATTGGGCGCAGAAAACAGAGTGACCAACTGCCTCTTTGCAAAAAATTCATATCCATCTTCAACCACCT-TGAAGAGAAAATTTTTTCAATATAAATAGGTGCAAATATTAGGTGAGTAAAACCATGTTTCAGTTTCCCATTGAGCCTGATATCTTG-----TGTTCCAGAAACACTTTGTATAAATAAGCAATACCTACCCACCAAAATCAACAAGGAGAATCTGTGCTCACACACATGCTCTTAAGTGTACATGTAAAATTCAAAATCAATACCTGATGGGCTCTACATATAAGATCCAAATCATGCTTATGGAGAAATTTTGCAACCACTTCTGCACCAAATGTGAAGGACACTCCTCTGTCATTTTCACCCCAGCCTAAGACATCTTTATCGGGGTCAGACCACAAAAGATCACAAAGAAGACCTTGATCTGGTACATCAGTTGGTCGCATAATTCGCCGAATCTGCTCCATAGATTGAAGATCTGGTGATAAACCTATTCAATGAGGAAAAAAAA-----AAAATGAAGAAAGCAGAACTTTTAAAAGGATACTACCCCTTCAAAAGTTCCATTTGTCTACAGAGAAATTCAATAATCCTGACATAAAAA------CTGAAATCTATGATTATATTTTATTTACTTTTGGTTAAAAGAAAAAAACACAGAAAAAGGACAACTGGATACACACTAGAATTACATGCAGTAATGCATGGGGTGCAGTAGGTTTAAACAGTACATGGAAAC---AATTATATT-ATACAGAACACTGTAAAATAAAATCCAGTGATTTAAAAAACTCTTCTATGGGCTTCCCCCAGTTGATGACAATAATG---------------AGCGATGTTATGATTGATGGCTTATAATGACTGAGCTGAGAAGATAAGGATGCTCAG-TGTGAGGTAGTTCTCTAGGAAACCTGCACTGTTCACAGACCATTAAAATCTACAAGAGCTTATTGTATCGAGTTACAATATGGGATGCATATTGTAAGAGTTAAAAACCATGTATCCAACTCTACCAAAACCT-AAGTACAGAAGCACAGAGATAAAAGACATTATGCAGGCTTTTTGATGGCTAAAATCTACAAGAGCTTATTGTATCGAGTTACAATATGGGATGCATATTGTAAGAGTTAAAAACCATGTATCCAACTCTACCAAAACCTAAGTACAGAAGCACAGAGATAAAAGACATTATGCAGGCTTTTTGATGGCTGATTAATTTCAGACCATACAGGAAAAGAAATTCTCTTTGCAATTACTATTTTAATTACATTATAGAAAGCACAACCACTGAGCAAAGCAAAAC s mm3.chr5 30211444 1243 - 149719773 TCAATCCTGGGAAAAGGTTCCGTA--TTATTTTTCCTTTCTTTAGGAA----GAGCCCACACACTTTTT--CCATGGGATAAATATTC---CTAAAAAAGAAAGGGCAGCCTGCTCAGCAGAGGT----------------------------------------------GCAAGCACAT-----------------GAAAAGTGGCCACAGTCTCACCTGGAAGGAACACATGAGGGTCTCATCCACACTCATCATGGCGCCTGCATTGTCAAACTCGCCACAGTAGTTGGGTGCAGAAAACAGAGTGACTAACTGCCTCTTTGCAAAAAACTCATAGCCATCTTCAACCACCTGTGGAGAGACCG---TGTCAGTGTGAGCAGCTGGG-GCACGAGCTG-------CCCC--TCTCCTTCCCCACTGAGCTCGGCCTGCTGCCGCTCGCCCCGGAGGCACACTGTGT-GGCAAGCCATACCTACCCACCAAAATCAACAAGGAGCCTC--GGCTCACACCCATGCTC-TAAGTGTACATGTAAAGT-CAAAGTCAGTACCTGATGGGCTCTACATATAAGATCCAAATCATGCTTATGGAGAAATTTTGCAACCACTTCTGCACCAAATGTGAAGGACACTCCTCTGTCATTTTCACCCCAGCCTAAGACATCTTTATCGGGGTCAGACCACAAAAGATCACAAAGAAGACCTTGATCTGGTACATCAGTTGGTCTCATAATTCGCCGAATCTGCTCCATAGATTGAAGATCTGGTGATAAACCTATTCAACGAGAAAGGAAACCCCCTGAAGTGCAGACAGCATTGGCCTGAGCATGTGGCCAGCCCCTC---------------CTGCTGAGGAGGCTGGCA---CTGCCATGCTGCG-----GTGAAACCTGTGG--GTTTTTAACTTGGTTTTGG-----GGGAAACAATGCACGAAATGTAC------------------------TGTACTGCTGT-TGGTGTGCTGG---------------TCAGAGAC---AGTCACCTCAACACAGAGCCCCGCAACACCCAA-CCACTGAATCCACA--------------CTTCTCCCAATAGAAGGCAGGAAGGGA---ACACAGAG--GGTGCCACCATCACCAGATGC----AATGGCCGGGCACAG-GCACGACAATGCTCAGCTGTGAGGCAGCTCCTTCCG-AGCCTG--TGGTCCATGGACCACCAAATGTCAC--------------------------------------TCAACAGATCTAACAGTCTTGT-------TCTCTAAGTACCCGATCCAAGAGGGCATAGAGA------------------------------------CTAC-----------------------------------------------------GCCTT--------------------------------------------AATACATTATGTGGGTTTTTGGATAGCTGCTTCATTTCCAATCACCCCCAAACCTCCA-CATCTTTGCAA----TGCCTTTATTACCTCACACACAGAACAGCTGAGGAACGGAGCAGAGC s rn2.chr12 36666077 1210 + 46874691 TCAATGCTGGGAAAACGGCCC--------TGTTTCCTTTCTTAAGAATTCTTGAGCCCACACATTACTC--CTATGGGACAAATGTGCT-ACTAAAGAAGAATGGGCAGCTTGCTCAGGAAACAACA--------------------------------------------GGAAGAACTTCCTCGGGAGGTCA----GCAAAGCTGCTGCAGTCTCACCTGGAAGGAGCACATGAGGGTCTCATCCACACTCATCATGGCGCCCGCATTGTCAAACTCGCCACAGTAGTTGGGTGCAGAAAACAGAGTGACTAACTGCCTCTTTGCAAAAAACTCATATCCATCTTCAACCACCTGTGGAGAGACAG---CGTCAGTGTGAGCAGCTGGAAGCCTGAGCCG-------CTCCATTCTCCTTCCCCACTGAGCTTGGCCTCCTGCGGCTCTCCCCAGAGGCACACTGTGT-GGCAAGCCATACCTACCCACCAAAATCAACAAGGAGAATC--TGCTCACACACATGCTC-TAAGTGTACATGTAAAATTCAAAATCAATACCTGATGGGCTCTACATATAAGATCCAAATCATGCTTATGGAGAAATTTTGCAACCACTTCTGCACCAAATGTGAAGGACACTCCTCTGTCATTTTCACCCCAGCCTAAGACATCTTTATCGGGGTCAGACCACAAAAGATCACAAAGAAGACCTTGATCTGGTACATCAGTTGGTCTCATAATTCGCCGAATCTGCTCCATAGATTGAAGATCTGGTGATAAACCTATTCAACGAGAAAGGAAAACCCCTAAAGCACAAACGGCATGGGCACGAGCATGCGGCCAGCCCCTC---------------CTGCTGCAGAGGCTGGTG---CTGCCTCGCTGCGCTGCCGTGACATCTGTGG--GTTTTTTACTTGGTTTTAG-----GGGAAATAATTCAGGAAATGTAC------------------------TGTACTGATGT-TGATGTGCAGG---------------GCAGAGACACTACTCACCTCAACACAGAGCCCTGTAACACCCAG-CCACTGCATCCACA--------------CTTCTCCCAACAGAAGGCAGCAAGGAAAACACACAGGGCAGGCACCACCCTGACCAACTGC----AGTGGCTGGGCACAG-GGACAAC-GCGTCCAGATGTGAGGCAGCTCCC------ATCTG--TTGTC--TGAGCAGCCAG-----------------------------------------------------------AGTCCCTT-------TCTCTTTGTGCCC-ATCCACCAGAGC--GGGGA------------------------------------CCAC-----------------------------------------------------ACCAC---------------------------------------------ACACACTCTAT-GGTTCTTAGATAGCTGCTTCATTTCTAGTGCCACCC---------------------------CCTTTACTAC----CACACAGCACAGCCATGGAGCCATGC----- a score=35406.000000 s hg15.chr12_random 164395 363 + 590431 TTTTCTGCTCTATTTTCAAACCTAGCTTACAGAGTCTAGAATTCCCTGTAATAAATCAATTCCTTAAGATTTTTATCCAAATGATCCTGGCTGTATCAGAGTGAAAGTGC---AATGCAACACATCAACAAAGGAGAGTGTTCTGTCAGAGAAAGTCATCCCAATGATAACTCACAAATGTTAAAGTGTTCACCCTTTGGAAG-GGATCAAAACCTATTTGGAACAAAAA-------TCAGCCCACCTACCTCCATGACAGCAGAATATCTTCTCATCCACGATGGCTGCTATCGGTAAACAGTTAAAACAGTCTGTGAAAGTTTTCCATAGTTTAATGTTGTATCTTCTTTTACCTGTGATTAAAAAGAGAGT s mm3.chr5 30212770 297 - 149719773 TTCTCTTCCC--------AACCTAT---------------AACCCCTGC----------TTCCTCACA--CTTGATCCAAATGA-CCGGGCTGTATCACTGTGAAGAAGCCTTGGCACCAC---------------AGTGGCCTGGCCAGGGTCACCGTGCCCA-----------------------GCTGACTTTTCAGAAG-GGGT--AGAGCTGCCTAGGTGAAGGCAACACCTCCATGTCACATACCTCCATGACAGCAGAATATCTTCTCGTCCACGATGGCTGCTATCGGCAAGCAGTTAAAACAGTCTGTGAACGTTTTCCACAGCTTAATGTTGTATCTTCTTTTACCTGTGAGAACGCAGACAGT s rn2.chr12 36667379 285 + 46874691 GTCGATTCCC--------AACCTAG---------------AACCCAT------------TTCCCTCGG--CTTGACCCACATGA-CCTGGCTGTGTCACTGTGAACAGGCCTTAGTGCAAC---------------AGTGGCCCAGCCAAAGCCATCATGCCCA-----------------------GTTGACTTTCCAGAAGCAGGG--GAAGCTGCACAGGTGAAAGA-----------GCCACATACCTCCATGACAGCAGAATATCTTCTCGTCCACGATGGCTGCTATCGGTAAGCAGTTAAAACAGTCTGTGAACGTTTTCCACAGCTTAATGTTGTATCTTCTCTTACCTGTGAGAATGCAGACGGT a score=140.000000 s hg15.chr12_random 164758 15 + 590431 ATTACATTAAAAAGA s mm3.chr19 6489573 15 + 61093376 GGCTCATAGGGAAGA a score=66483.000000 s hg15.chr12_random 217957 534 + 590431 GGATGTTTGGGGGGGAAAAAACCACCCCCAAAATGAAACTTCCT---TggggccccggggggggggccccccgggcTTTTTAA-ATACCCCCTTTAAACTGGATATTCTTTGGGCCGAAGCCAAT-TTTGCCCCCACGGGTCTTTTGTTGTTCGTCAGCGGAAATATTCCTTTTCTCCCA-------AATCCCAAATTACCCTCCAAACCTTTTTGGCTTTTTTCC-TTGGGAAGGGGCCCCCCTAAAATTTGCCCTTGTTTTGGGGGGGGCACAGGAATTTTAAACAGTTTAAAAAATTTG-GTACAACCCCCCTGGGGTGAAAAAGGT-----TGGGTCAAAAAGA-AAACCCCCCCCCCCAACCCCCCTGAGGAAATTTCCCCCCCTTATTTTACCCGAAACTAAGGGGGATCCCAGGTCTGGGGATGG-GGGACACCTTGGGCCACAGGATACTGGTTGCTTCAGGGTACCCATGCCCCGTGCCCTCGCCTGGAATCAGTGTTACTGCATCTGATTAAATGTCTCCAGAAATAA----AGAATAATTCTGCCAAA s mm3.chr4 28669729 535 - 152921959 GGGTGTCTGGAAGAGAAAGAGACAGAACAAAGATGGAAGTGGCCTGGTGGACCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGG-ACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACACA---CACACTCATAGCCTCTCTGGTCTTCCCCC-TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTT--GCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTG-----------CTATGTGGAAGAGGCGGGTAGGGTACAGGAGGCAGAACCCCCCTCCCAAGTCTCCCTGGGCAGATCTTCCTC---TATTTAAC-TGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGG--TGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAAACTTCTCCGGAAATAAAGGGAGAAAAATTCTGCCAAA s rn2.chr5 31744826 530 - 191625135 GGGTGTCTAGAAGAGAAAGAGACAGAACAAAGATGGACGCAGCC---TGGGCTCCCGGAGGCAGAGCTCCTCTTTGTTTTCAATCTGCACCTTACAGACTGATGATGTCTTTGGCTGAAAGCAGGTCCTGTCCCTCAGCACGTTCATGTGCTCACACGCTCGGACACCCACCTTCCCCGT-------ACACACA---TACACTCATAGCCTCTCTGGCCTCCCCCCACGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTT--GGTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTCAGACACCTCTGCGTGGACGAGGC-----GGGTACAGGACTC-GGACCCTCCTCCCAAGACTCCCTGGGAAGATCTCCCTC---TATTTAAC---TAACCGACGGGGAACTCAGGTCTGGGAACGGAGGGGCACCTTGGGCCACAGAATACTGGTTGCTTCAGGGG--CAATACCCTCTGTCCTGGCCTGGAATCAGTGTTATTACATCTGATCAAACGTCTCCAGAAATAAAGTGAGAATAATTCTGCCAAA a score=1069.000000 s hg15.chr12_random 218491 14 + 590431 AAAAAAAAAAAAAA s mm3.chr12 66562984 14 + 114462600 AAAAAAAAAAACAA a score=52270.000000 s hg15.chr12_random 219132 227 + 590431 GGTCTTATCGAATGTTACTTAGCCTCCAACAGTATTCGAGAAGCAATGGTAATGGCTAACAACGTTTACAAAACTCTGGGAGCAAATGCACAGACCCTTACCCTTTTAGCCACCGTTTGTCTTGAAGACCCAGTGACACAGGAGAAAGCCAAAACATTATTAGATAAAGCCCTGACCCAAAGGCCAGATTACATTAAGGCTGTGGTGAAAAAAGCAGAACTACTTAG s mm3.chr5 119774499 227 + 149719773 GGTCTCATAGAGTGTTACTTAGCTTCTAACAGCATCCGAGAAGCAATGGTGATGGCCAACAATGTTTACAAAACTCTGGGTGCAAACGCTCAGACGCTTACGCTGTTAGCCACCGTGTGTCTGGAAGATCCAGTGACCCAGGAGAAAGCCAAAACTCTGTTAGATAAAGCCCTGGCGCAGAGGCCGGACTACGTCAAGGCCGTGGTGAAGAAAGCAGAGCTGCTCAG s rn2.chr12 10458105 227 - 46874691 GGTCTCATAGAATGTTACTTAGCTTCTAACAGCATCCGAGAGGCCATGGTGATGGCCAACAATGTTTACAAAACTCTGGGTGCAAACGCTCAGACGCTTACCCTGTTAGCCACCGTGTGTCTGGAAGATCCAGTGACACAGGAGAAAGCCAAAACCTTGTTAGACAAAGCCCTGGCCCAGAGGCCGGACTACGTCAAGGCCGTGGTGAAGAAGGCAGAATTGCTGAG a score=33850.000000 s hg15.chr12_random 219359 145 + 590431 CAGAGAACAGAAATATGAAGATGGAATTGCTTTGCTGAGGAACGCACTGGCTAATCAGAGTGACTGTGTCCTGCATCGGATCCTAGGAGATTTCCTTGTAGCTGTCAATGAGTATCAGGAGGCAATGGACCAGTATAGTATAGCA s mm3.chr5 119775705 145 + 149719773 CAGGGAACAGAAATATGAAGATGGAATTGCTCTGCTGAGAAATGCGCTGGCCAACCAGAGTGACTGTGTCCTGCATCGGATCCTGGGGGACTTCCTAGTAGCTGTGAACGAGTACCAGGAAGCGATGGACCAGTACAGTATAGCA s rn2.chr12 10459102 145 - 46874691 CAGGGAGCAGAAGTACGAAGATGGAATTGCTCTGCTGAGAAATGCACTGGCCAACCAGAGCGACTGCGTCCTGCACCGCATCCTGGGGGACTTCCTGGTGTCTGTGAATGAGTACCAGGAAGCAATGGACCAGTATAGCATAGCA a score=55093.000000 s hg15.chr12_random 219504 351 + 590431 CTAAGTTTGGACCCCAATGACCAGAAGTCTCTAGAGGGGATGCAGAAGATGGAGAAGGAGGAGAGTCCCACGGATGCCACTCAGGAGGAGGATGTGGACGACATGGAAGGGAGTGGGGAAGAAGGGGACCTGGAGGGCAGCGACAGTGAGGCGGCCCAGTGGGCTGACCAGGAGCAGTGGTTCGGCATGCAGTGAGGGGGCGGCAGCTCCATGGC-CGCAGTGGCCTGCCCTGCTCTGAGCACTTCCGTGGACTGAAGGAACCGTAGGAGCCTGCTCTCAGAAGGACAATGATTCAGCATGTGATTGCAGCAGGGGTCTCTGCCCCCTCGCTCCCAATTCCTAGTCGTGACT s mm3.chr5 119778213 295 + 149719773 CTTAGTTTGGACCCCAATGACCAGAAGTCTCTCGAGGGGATGCAGAAGATGGAGAAGGAGGAGAGTCCCACGGATGCCACTCAGGAGGAAGATGTGGACGACATGGAGGGGAGTGGGGAAGAAGGGGACCTGGAGGGCAGCGACAGTGAGGCAGCCCAGTGGGCAGACCAGGAGCAGTGGTTCGGCATGCAGTGAAGGCACAGTGGC-----AGCGCCTGGTG--------------------TTCCGAGAGTGACAGATGCTGTCGGA----------------------------AGTGTGCTCACAGCAGGGCTCCCTGCC----TGTTTCCAAGTAGTAGTCGGGACT s rn2.chr12 10460870 290 - 46874691 CTCAGTTTGGACCCCAATGACCAGAAGTCCCTGGAGGGCATGCAGAAGATGGAGAAGGAGGGGAGCCCCACAGACGCCACTCAGGAGGACGACGTGGACGACATGGAGGGCAGTGGGGAAGAAGGGGACCTGGAGGGTAGCGACAGTGAGGCAGCCCAGTGGGCTGACCAGGAGCAGTGGTTTGGCATGCAGTGAGGGCACAGCGGT-----GAC-CCTTGTG--------------------TCCCTAGAGTGGCAGGAGCTGTTGGA----------------------------CGTGTGCTCACAGCAGGCCTTTCTGCC----TGTTTCCTCA----AGTTGGCACT a score=787.000000 s hg15.chr12_random 220348 51 + 590431 ACTGGTTTGTACAGTCAAAAAAAAAAAAAAAAAGTCGACGCGGCCTGATGA s mm3.chr8 90326735 51 + 128923138 ATTGCTTTGTCCTTTAAAAAAAAAAAAAAACAGTGCAATATGGCCTTGTGA s rn2.chr19 21876462 17 + 58130210 ATTGCTTTGTCCTACAA---------------------------------- a score=32467.000000 s hg15.chr12_random 220562 214 + 590431 AAGCACATAAGTTT-GGCTG--TTTCCGAGAAACCGCCCCGACCCC-GGAATCAAATGCCTCCCCTTGG-------TCCGGATCAAAAATGGGGTCCATTGAAAACCCCCGTGCGCGGTGAAAAGTTAGCACTTGGCAGAATCCCAAGGCTTGGCCCGGCCCGGGGTTTTGCAAAGGTCCCGACGCA-GTTAGGTCACCAGAATGGCTTT-TGCCGAAATTCCAGGA s mm3.chr15 85230695 222 + 104111694 AGGCACTTCAGTTTGGGCTGGTGTTCATGGAGTCGGCCCTGGCCCCGGGAGTCGAGTGGCCCTGCCTGGCTGTAGCTCCGGTGCTGGCTTG----TCACAGAAGACCCCGGTTGGCGGTGACAGGTAGGCACTTGGCAGCATTCCCAGGGCCAGGCAGGGCCGGGGCTCCGTGCAGGCTCC-ACACACACTAGGTCATCAAGATGGGTTTCTGCCGTACTTCCAGGA s rn2.chr7 111445356 222 + 139049774 AGGCACTTCAGTTTGGGCTGGTGTTCATGGAGTCGGCCCTGGCCCCGGGAGTCGAGTGGCCCTGCCTGGCTGTAGCTCCGGTGCTGGCTTG----TCACAGAAGACCCCGGTTGGCGGTGACAGGTAGGCACTTGGCAGCATTCCCAGGGCCAGGCAGGGCCGGGGCTCCGTGCAGGCTCC-ACACACACTAGGTCATCAAGATGGGTTTCTGCCGTACTTCCAGGA a score=40875.000000 s hg15.chr12_random 220779 161 + 590431 CTGTTAAAATCCGATGCAGCGGCAACGTGACGTAGGTTAAGTGTGCATAGAGAAGGAAGTTTCCATCTGCTCTGTTCAGCTTCAGCCAGGACCCGACCAGGGACCGTCCTGTGCCCGACAGGGACCGAGACCGCAGGTTGGTTGCATTGTGCAGATCGGCT s mm3.chr15 85231192 161 + 104111694 CTGTTAAGATCCGATGCAGCGGCAAAGTGACATAGGTCAGGTGTGCATAGAGAAGGAAGTTCCCATCAGCTCGGTTTAGCTTCAGCCAGGACCCGACCAGGGACCGTCCTGTGCCAGACAGGGACCGAGATCGCAGGTTGGTGGCATTGTGCAGGTCGGCT s rn2.chr7 111445907 161 + 139049774 CTGTTAAGATCCGATGCAGCGGCAAAGTGACGTAGGTCAAGTGTGCATAGAGAAGGAAATTTCCATCAGCTCTGCTTAGCTTCAGCCAGGATCCGACCAAGGACCGTCCTGTGCCGGACAGGGACCGAGACCGCAGGTTGGTGGCGTTGTGCAGGTCGGCT a score=8380.000000 s hg15.chr12_random 220940 33 + 590431 CCACCGTCGTCCTCCCGGAAGAACTCCTCGCTG s mm3.chr15 85232255 33 + 104111694 CCACTGTCGTCCTCTCGGAAGAACTCCTCGCTG s rn2.chr7 111446939 33 + 139049774 CCTCCGTCATCCTCTCGGAAGAACTCCTCGCTG a score=80488.000000 s hg15.chr12_random 221033 372 + 590431 ttACCAAGTGAATAATTTTATTAAGGTCCTGAAGGTGAGTGTCCGGAGGTGCTGGGTAAAACACATCACAGGTAAGAAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAAACCTAGCGTAATAAAACCCTCACTGGATGTACATGGAAAGGAGTATGGTGAGCTATTTCCTTTTTAAAGGATGAGACCTTCATAAATTGGCCCCTCGGATTCTGGTGATTCCCGCCGCAAGCGCAAATGCTCCAGTGTGTTATGAAAATGTTTGTTAATCTGCTCTGTTTCTTCACTGGATTCAAGATTCGGGAGGTCTTCTCGAATCTTTTGGATAAGCTGGTTTAAAACCTGAATTGTTACC s mm3.chr8 84551853 350 + 128923138 TTATGAAGTGA--------GTTAAGGTCCTGAAG----GTGTCTGGAGGTGCTGGGT-AAACACATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACCTAG-----TTAAGCCCTTTCTG---ATGTGTAGAAAGGAGTATGCTGAGCTGTCTTC-TTTTAAAGGATGAGACCTTCATAGATTGGCCCCTCAGACTCTGGTGATTCCCGTCTTGAGCGCAAGTGCTCCAATGTGTTGTGAAAATGCTTGTTTATTTGTTCTGTTTCTTCACTGGACTCAAGATTTGGGAGATCTTCTCGAATCTTTTGAATAAGTTGGTTCAAGACTTGAATGGTTACC s rn2.chr19 15782535 350 + 58130210 TTATGCAGTGA--------GTTAAGGTCCTGAAG----GTGTCTGGAGGTGCTGGGT-AAACACATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACCTAG-----TTAAGCCCTTTCTG---ATGTGTAGAAAGGAGTATGCTGAGCTGTCTTC-TTTTAAAGGATGAGACCTTCATAGATTGGCCCCTCAGACTCTGGTGATTCCCGTCTTGAGCGCAAGTGCTCCAACGTGTTGTGAAAATGCTTGTTAATTTGCTCTGTTTCTTCACTGGACTCAAGGTTTGGGAGATCTTCTCGAATTTTTTGAATAAGTTGGTTCAAGACCTGAATTGTTACC a score=36475.000000 s hg15.chr12_random 221405 143 + 590431 GCATCATTTTCCTTTTCATAAAAATAGATATATCTGTTCAGAATTTCTATAAAAAGCTGCACTTGTAGAGAGGGGTCCATGCACTGATTTGCTATTTTTAGAGCTTTTTTTAGGCACTCCATTACCCTCTTGCCTCCGTGAAG s mm3.chr8 84552888 143 + 128923138 GCATCATTTTCTTTTTCATAGAAATAGATGTACCTGTTCAGAATCTCTATAAAGAGCTGAACTTGTAGAGAGGGGTCCATGCACTGATTTGCTATTTTTAGTGCCTTCTTTAGGCACTCCATGACCCTTTTACCTCCATGAAG s rn2.chr19 15783582 143 + 58130210 GCATCATTTTCTTTTTCATAGAAATAGATGTACCTGTTCAGAATCTCTATAAAGAGCTGAACTTGTAGAGAGGGGTCCATGCACTGATTTGCTATTTTTAGTGCCTTCTTTAGGCACTCCATGACCCTTTTACCTCCATGAAG a score=60501.000000 s hg15.chr12_random 221548 248 + 590431 CTCCTCCCCATTTTTGTCCGTGTTTCTGCCAGACCAGAAGAGATGTGCACAGGTGCTCACAGCTCGGCCCTGATCAGGTTTCTTTAGAAGTTTGGATGCAGCAAGGGCACACTGAGTCCTCAGAGGTTCATGATTCTCTTCACTGAAGCACTTCATCCTTTCAAAAGTGCCAATGATCAAGGTGATGGCAGCTAGCTGTGCTTTGGAATCGCTGATTTCATCTTCATACAGAGAAAATGCCTGGGACA s mm3.chr8 84554203 248 + 128923138 CTCTTCCCCATTTTTGTCTGTGTTTCGGCCAGACCAAAAGAGATGCGCACATGTGCTCACGGCTCGGCCTTGATCTGGTTTTTTCAGAAGTTTTGATGCAGCAAGTGCACACTGAGTTCTCAAGGGTTCATGATTCTCTTCACTGAAGCATTTCATCCTCTCAAAAGTACCGATGATCAAGGTGATAGCAGCCAGCTGTGCTTTAGAATCACTGATTTCATCTTCATATAGAGAAAATGCCTGGTATA s rn2.chr19 15784805 248 + 58130210 CTCTTCCCCATTTTTGTCTGTGTTTCGGCCAGACCAAAAGAGATGTGCACATGTGCTCACAGCTCGGCCTTGGTCCGGTTTTTTCAGAAGTTTTGATGCAGCAAGTGCACACTGAGTTCTCAAGGGCTCATGATTCTCTTCACTGAAGCATTTCATCCTCTCAAAAGTACCAATGATCAAAGTGATAGCAGCCAGCTGTGCTTTGGAGTCACTGAGTTCATCCTCATATAGAGAAAACGCCTGGCGTA a score=43053.000000 s hg15.chr12_random 221796 173 + 590431 TGAATTCATATGCGACTGTCTCATGATTTTCAAAACCAATTTCCCCAGCAGCTAGTGCTCCTTGAAGAAAAAGTCTTAAGGGCAATTCTGCCAGCTCTGCTTTGATCAAAGCACTGATAGTCTGGTGGGCAAATGAAAAAATCTTCTGGCATTTCTTTTCCCATTTGTCATCC s mm3.chr8 84555044 173 + 128923138 TAAATTCATATGCTACTGTTTCATGATTTTCAAAGCCAATTTCTCCAGCAGCTAATGCTCCTTGAAGAAAAAGTCTCAGTGGTAATTCAGCCAGCTCAGCTTTAATCAAAGCACTGATAGTCTGGTGAGCAAATGAAAATATCTTCTGGCATTTCTTTTCCCACTTGTCATCC s rn2.chr19 15785650 173 + 58130210 TAAATTCATATGCTACTGTTTCATGATTTTCGAAGCCAATCTCCCCAGCAGCTAATGCTCCTTGAAGAAAAAGTCTCAGTGGTAACTCAGCCAGCTCGGCTTTAATCAAAGCACTGATAGTCTGATGGGCAAATGAAAAAATCTTCTGGCATTTCTTTTCCCATTTGTCATCC a score=32305.000000 s hg15.chr12_random 221969 123 + 590431 ACTTTAGAATTCTCTTTATATCGAAAAGCCAGCTGGTAAGCTGCAAATACCAAAGGTGGCAGTGTGAAGCGAATCCGCTGATTTCCACCAGCTCCAAAATGTTTTCGTGCTGTGTTCAAAATC s mm3.chr8 84561587 123 + 128923138 ATTTGGGAATTCTCTTTGTATCGAAAAGCCAACTGGTAAGCTGCAAATACCAAAGGTGGCAGTGTGAAGCGAATCCGCTGATTTCCACCAGCCCCAAAATGTTTTCGTGCCGTATTCAAAATC s rn2.chr19 15789985 123 + 58130210 ATTTGAGAATTCTCTTTGTACCGAAAAGCCAACTGATAAGCTGCAAATACCAAAGGTGGCAGTGTGAAGCGAATCCGCTGATTTCCACCAGCCCCAAAATGTTTTCGTGCTGTATTCAAAATC a score=30948.000000 s hg15.chr12_random 222092 134 + 590431 AAGTACTGCTGGTCAGGGTCCTCAGAGCGCAGCAGATGAATGAAGCGGCCCACAAGGCTCTGCTCATCAGCAAAATCTTCTGGATCAGGGTCTTCTACAGGTTGATCTGGCTGATCTTTGATCGACGCGGCCGC s mm3.chr8 84564366 134 + 128923138 AAATACTGCTGGTCAGGATCATCAGAACGTAGCAGATGAATAAATCGGCCAACAAGGCTCTGTTCATCAGCGAAGTCTTCTGGATCAGGGTCTTCTACAGGTTGGTCTGGCTGATCCTGAATCAATGTGGACAC s rn2.chr19 15792942 134 + 58130210 AAATACTGCTGATCAGGGTCTTCAGAACGCAGAAGGTGAATAAATCGGCCAACAAGGCTCTGTTCATCAGCAAAGTCTTCTGGGTCAGGGTCTTCTACAGGCTGGTCTGGCTGATCCTGAATCAACGTGGACAC a score=1022.000000 s hg15.chr12_random 222232 28 + 590431 TTTTTTGTTTTTTTTTACACAGTTG-CAT s mm3.chr13 80224409 29 - 116242670 ttctttctttctttcttCACATTTGGTAT a score=12217.000000 s hg15.chr12_random 222260 51 + 590431 TTTATTACCTCCACATTTTGAAGCAGTTCATGACCAGCATAGTGCTTTGGG s mm3.chr15 63646812 50 - 104111694 TTTATTAGC-CCACATTTTGAAGCAGTTCATGACCAGCATTGTACTTTGGG s rn2.chr15 62498345 50 - 99209255 TTTATTAGC-CCACATTTTGAAGCAGTTCATGACCAGCATTGTGCTTTGGG a score=396.000000 s hg15.chr12_random 222311 15 + 590431 GGCATTTTTTTTTTT---- s mm3.chrX 44071429 19 + 149996094 GATATTTATTTTTTTCACA a score=273225.000000 s hg15.chr12_random 222326 1281 + 590431 TTT------CAATAAATGAAAGCATTTAAGAAAAAGGCACGTATTCC-TTGAATAGGTAAGAAAAGCTCCCCATCTGTCCCCTCCCTTTTT----GAGGGAGCAGCCCCTATGGGAACTCGTATTGGTACCCCAGAAACATTCAGCAAAGCAACCATTAGCCTCCCTGACCCCTCTCCCCGCTTCCCCAGCAGCTAGGATGAAGGCAACATATTCCTCACAGGTCATTTGATCTTGAGGTCCTTCAAGGCTGACTCCAAGCTCTTCACATCCCAGATACTCATGCCGCCATCCATGCCAGTGGTGCAGAACTGCGAGCACTTGGCCTTGCCGCCGCTGAGCACCGAGATCTGGCTGACGCTGTTCTTGTGCAGCGAGTCTAGGCCCGCGCCCGCAGCCGTGCCACCCTCGGAGCTCGCCTTCTTGTCCAGGTTCTGGAAGCGCTCGCGGGCCGTCAAGCCACGCTGCGAGCTCTGCTTAGGAACGTCCAGCCGCCCGCCGAAGCTCAGCATCCCCGCGGCGGCGTCATAGGTGAACAGCACCGGGAAGCAGTCGTGGCCCGCTGCCACCAGGCTGTTGTCTGTGATGAAGGTCAGCGCCAGCAGTGGTA-GTGTTTCAGAGGCCAGAGTCGCGACGGCCATCTTCTTGTCGGCATCAGCCAGGCAGACGGTGCTGTCGTGGCTTACCCAGGCCACGCGGCTCCCGCTGGCTGAGAAACAGACGCCATGTACCCAGCCGCAGCTACTGCTGGATTCGAACATCAGTTCCCCAAAGGGCATCTTGGAGCCCCACGGGGTGGGTGCCGGCCGTTCCTCCACCTCCTTGATGTAGGCTGAAAAGATCCGACACTTGAAGTCACAGGAGCCGGCAGCCAGCAGCACATTGTTGGGGTGCCAGTCCAGGCTGAGGACGGTGGAGCGGATGGGCTTCTTGATGTGCTTGCAAACCCACCAGTCATTCTCCTGCTCGAAATAACAGATGGAGATCACACGAGAGCCGCTGCCCACAGCAAACTTGTTCTCGTTGGGGGCCCAGCGCACGCAGCGGGCAGCCCGGTTGATCCGCAGGATGACCAGCGTGGGCTTCCATGTGCGGCCCTTCAGCGTCCACACGTAGGCGTTGCGGTCTGTGCCGCAGGTCACAATACGGTTACTCTCGGGGGCCCAGTCGATGCCTGTCACCTGCCCGTTGTGCTCCTTGAGCTCGTGCACCTTGGTCCATTTGGCACCGCTCTTTTCATAGATATGCACCTCATGGTTGTTGGGGCAGATGGCAATCTGGGTGCGGTCCTTG s mm3.chrX 44071448 1236 + 149996094 TTTGGTTTGCAATAAAGAAGAGCATTTCTTTAAAAGGCACATTTTTA-TTAAATAGGCAGGAAAGTTCCCCT-CCTGCCTCTTCC------------------------TTTGCAGACGTGTCCT-GCACCCTAGAAACATTCAGCAAAGCAGCCCTTAGCCTCCCCGATCCCCTTTCCCTCCCTCCCAGCA-----------------------------GTTCATTTGATCTTCAGGTTCTTCAAGGCTGACTCCAGGCTCTTCACGTCCCAGATGCTCATGCCACCATCCATGCCTGTAGTGCAGAACTGTGAGCACTTGGCCTTGCCCCCGATGAGCACCGAGATTTGGTTGATGCTGTTCTTGTGCAGTGAATCCAGGCCAGCCCCAGTGGCTGCACCCCCCTCAGAGCTGGCCTTCTTGTCCAGGTTCTGGAAGCGCTCTCGGGCTGCCATGCCACGCTGGGAGCTCTGCTTGGGAACATCCAGCCGGCCACCGAAGCTCAATGTCACCGCAGCATTGTCATAGGTAAACAGCACCGGGAAGCAGTCGTGGCCTGCTGCCACTAGACTATTTTCTGTGATGAAGGTGACGGCCAAGAGTGGTA-ATGTCTCAGAGGCCAGGGTTGCCACGGCCATCTTCTTGTCAGCATCTACCAGGCATACAGTGCTGTCATGGCTGACCCAAGCAACTCGGCTCCCACTGGCCGAGAAGCAGACACCGTGCACCCAGCCACAGCTGCTGCTCGATTCAAACATCAGCTCCCCAAAGGGCATCTTGGAGCCCCACGGTGTAGGGGCTGGCCGTTCTTCCACCTCCTTGATATAGGCAGAGAAGATCCTGCACTTGAAGTCACAGGAGCCTGCTGCCAGGAGCACGTTGTTGGGATGCCAGTCCAGGCTGAGGACAGTGGAGCTGATGGGCTTTTTGATGTGTTTGCACACCCACCAGTCATTCTCCTGCTCAAAATAACAGATGGAAATGACCCGGGAGCCGCTGCCCACAGCGAACTTGTTCTCACTGGGGGCCCAGCGCACACAGCGGGCAGCTCGATTGATCCGGAGGATGACCAGTGTGGGCTTCCACGTGCGGCCCTTCAGCGTCCACACATAGGCATTGCTGTCTGTGCCACAGGTCACAATGCGGTTATGCTCAGGGGCCCAGTCGATGCCTGTCACCTGCCCGTTGTGCTCCTTGAGCTCGTGCACCTTGTTCCACTTGGCACCGCTCTTCTCATAGATGTGTACCTCATGGTTGTTGGGGCAGATGGCGATCTGTGTGCGGTCCTTG s rn2.chr15 62498409 1280 - 99209255 TTTGGTTTACAATGAATGAAAGCATCTCTTTAAAAGGCACGTTTTTGGTTAAATAGGCAGGAAAGTTCCCCCACCTTCCTCTTCCCCTCTTTGGAGAGAGAGCATCCCCTTTGCAGTCCTGTACT-GCACCCTAGAAGCATTCAGCAAAGCAGCCCTTAGTCTCCCCAA-CCCCTTTCCCTCCTCCCCAGCACTTGGGATGAGGA---------CCTCACAGCTCACTTGCTCTTCAGATCCTTCAAGGCTGACTCCAAGCTCTTCACATCCCAGATGCTCATGCCACCGTCCATGCCTGTGGTGCAGAACTGCGAGCACTTGGCCTTGCCCCCGCTGAGCACCGAGATTTGACTGACGCTGTTCTTGTGCAGTGAATCCAGGCCAGCCCCTGTGGCTGCACCCCCTTCAGTGCTGCCCTTCTTGTCGAGGTTCTGGAAGCGCTCTTGGGCTGTCAGGCCACGCTGGGAGTTCTGCTTGGGTACATCCAGCCGGCCACCAAAGCTCAATGTCCCTGCAGCGTTGTCATAGGTAAACAGCACCGGGAAGCAGTCGTGGCCTGCCGCTACGAGACTATTTTCTGTGATGAAGGTGATGGCCAGGAGCGGTACATGTCTCAGAGGCCAGGGTTGCCACCGCCATCTT-TTCTCAGTATCTACCAGGCACACAGTGCTGTCATGGCTGACCCAAGCAACTCGGCTCCCACTGGCCAAGAAGCAGACACAATGCACCCAGCCACAGCTGCTGCTCGATTCAAACATCAGCTCCCCAAAGGGCATCTTGGAGCCCCATGGTGTAGGGGC-GGCCATTTCTCCACCTCCTTGATATAGGCAGAGAAGATCCTGCAGTTGAAGTCACAGGAGCCTGCAGCCAGGAGCACGTTGTTGGGATGCCAGTCCGGGCTAAGGACAGTGGAGCGGATGGGCTTTTTGATGTGTTTGCACACCCACCAGTCATTCTCCTGCTCAAAATAACAGATGGAAATGACACGGGAACCACTGACCATGGCGAACTTGTTCTCACTGGGGGCCCAGCGCACGCAGCGGGCAGCTCGATTATTCCGAAGGATGACCAGTGTGGGCTTCCACGTGCGGCCCTTCAGCGTCCATACATAGGCATTGCGGTCTGTGCCGCAGGTCACAATGCGGTTACTCTCAGGGGCCCAGTCGATGCCTGTCACCTGCCCATTGTGCTCCTTGAGTTCGTGCACCTTGTTCCACTTGGCACTGCTCTTCTCATAGATGTGCACCTCGTGGTTGTTGGGGCAGATGGCGATCTGAGTACGGTCCTTG a score=36744.000000 s hg15.chr12_random 223625 206 + 590431 GACATCCAGCTGCTAAAGGCATACATGCGTGCAATCCGCAGTGTCAACCCCAACCTTCAGAACCTGGAGGAGACAATTGAATACAACGAGATCCTAGAGTGGGTGAACTCCCTTCA---GCCAGCAAGAGTGA-CCGCTGGGGAGGGATGATCTAAACTCCTGATGCTGTGCTCCAGGCTGTAATCAAGCGCTCCCTGGTGGAGAGTGGC--- s mm3.chrX 86847533 210 - 149996094 GAAATTCAGCTGATGAAGGCATATATGCGAAACATCCACAGGGTCAACCCCAACCTTCAGAACCTAGAGGAGATAATCGAGTACAATGAGATCCTCGAGTGGCTCAACTCCCCACAACCACCAGCAACTGAGACCCTCTGGGGAGGGATGATCTCCTCTCCTGACACTGTGCTCCAGACTGTAATCAACCACTCCACTGTGGAAAGTGGC--- s rn2.chrX 67658600 209 - 133900917 AACATTCA-CTCCTGAAGGGATATATGCAAACAATCCACAGAGTCAACCCCAACCTTCAGAACCTGGAAGAGACAATCGAGTACAACAAGATCCTCAAGAGGGTGAACCCCCTACA---GCCGGCAAGAGTGACCCACTAGGGAGGGCTGATCTCCACTCCTGACTCTGTGCTCCAGGCTGTAATCAAGTGTTTCTCTGTGGAAAGTGACTGC a score=79938.000000 s hg15.chr12_random 223995 354 + 590431 ATTGTATCTCACAGAATTTTGATTTGCCTAAACACCCACAGGAGACATTTCTGGGACAGTAGCAACATAAGGTCCATCCCAAAACTTTGGCTCATTATCATTAATATCCTGCACTTTGATGATGAATTCTGATTCAGGCTCCAGGGGCTTTCTGGTTTCTATGTCCACAGCCTGAGCACGAAGAGTGTAGAAAGGTTTTTCTTCTCTATCTAGGCTCCTTATTGCATGAATGTCCCCTGTGGTTTCATCAATGGTAAAAACGGTGCCAGCGCCATCTCCTGAGAGGGTGTATTTCGCAGTGCCCTTTCCCTTGTCTAAGTCGGAATGGAGCTTTAGGGAagagagggagagaga s mm3.chr15 82831587 346 - 104111694 ATAGCATCTGATAGAAATTTGATTTGTGTACTCACCCACAGGAGACATTTCTGGAACACTAGCAACATAAGGTCCATCCAAAAACTTTGGTTCATTGTCATTAATATCCTGCACTTTAATGATGAACTCTGATTCAGGCTCCAGTGGCTTCCTGGTTTCTATGTCCACTGCCTGAGCACGAAGAGTGTAGAAAGGTTTTTCTTCTCTATCCAGGCTTCTTATTGCATGAATGTCTCCTGTAGTTTCATCAATTGTAAAAACAGTGCCAGCACCATCTCCGGAGAGCGTGTATTTAACAGTGCCCTCTCCTTTATCCAAGTCCGAATGCAGCT------GAGAA--ACAGAGAGA s rn2.chr2 177094875 348 - 246339213 ATAGCATCTAATATAAACTTGATTTGTCTACTCACCCACAGGAGACATTTCTGGAACACTAGCAACATATGGTCCATCCAAAAACTTTGGCTCATTATCGTTAATATCCTGCACTTTAATGATGAACTCTGATTCGGGCTCCAGTGGCTTCCTGGTTTCTATGTCCACTGCCTGAGCACGAAGAGTGTAGAAAGGTTTTTCTTCTCTATCCAGGCTTCTTATTGCATGAATGTCTCCTGTAGTTTCATCAATCGTGAAAACAGTGCCAGCACCATCTCCAGAGAGCGTGTATTTAACAGTGCCTTCTCCCTTGTCCAGGTCAGAGTGTAACT------GAGAAAGAGAGAGAGA a score=3653.000000 s hg15.chr12_random 224349 43 + 590431 ---gaggaagagaaagagaaggacaaagaaagaACACCATTAAAAG s mm3.chr15 85252409 46 - 104111694 AATGAACATATCCATGATGATGACTAAAGATGCACAGGATTAAAAG s rn2.chr2 179746757 43 - 246339213 ---ATGCATAGCCATGAGGATGACTAAAGATGCACAGGAGTGAAAG a score=973.000000 s hg15.chr12_random 224518 10 + 590431 CAGCAGGACG s mm3.chrUn_random 30547097 10 + 117911829 CAGCAGGACG a score=45933.000000 s hg15.chr12_random 224528 326 + 590431 GTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCTGAAAATGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGAGAGTGGACGGGAgcggcgggggcggcgcgcgcgcgcgcgTGTGGTGTGCGTCGGAGggcggcggcggcggcggcggcggGGGTGTGTGGGGTCCTcccccgcccccccccccac-----gcctcctcccctcctcccgcccacgccccg-ctccccgcccccgGAGCCCCGCGGACGCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTG s mm3.chrUn_random 30547107 281 + 117911829 GTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCTGAAAATGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGGAACGGGACGGGAGCGGC--------CGCGGGTGCGCGTCTCTGGGG---------------CGGGAGTGCCCTTGGGGGGGGGGT---------------------CCCCTTAC-----CCGGCCTCCCCTTCCGCGCGCGGGGTTTCGCCCCCGCGGCGTCGG--CCCCGCGGACGCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTG s rn2.chrUn 23310444 271 - 55450527 GTGGCCANGNNNNNNGGAATCCGCGAAGGAGTGTGTAACAGCTCACCTGCCGAATCGACTAGCCCTGAAAATGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGGAACGGGACGGGAgcggc--------cgcgggcgcgcgaccccgggg-------------gccgggcg-------ATAGAGAGCGT---------------------CTGTTNATAACCNCCGTCCAcccc---------cggggctcc--ccccgcggcgtcgg-gccccgcggACGCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTG a score=225224.000000 s hg15.chr12_random 224854 945 + 590431 AGCCTTGAAGCCTAGGGCGCGGGC---CCGGGTGGAGCCGCCGCAGGTGC-----AGATCTTGGTGgtagtagcagcagcag---caccaatggcagcggtggcagtggcagcagtggcccaaaggcaggagcagcagacaagagtgcagtggtggctgccgc---cgcaccagcctcagtggcagATGACACACCACCCCCCGAGCGTCGGAACAAGAGCGGTATCATCAGTGAGCCCCTCAACAAGAGCCTGCGCCGCTCCCGCCCGCTCTCCCACTACTCTTCTTTTGGCAGCAGTGGTGGTAGTGGCGGTGGCAGCATGATGGGCGGAGAGTCTGCTGACAAGGCCACTGCGGCTGCAGCCGCTGCCTCCCTGTTGGCCAATGGGCATGACCTGGCGGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCTGTGGCCAGCCTGCTGAGCAAGGCAGAGCGGGCCACGGAGCTGGCAGCCGAGGGACAGCTGACGCTGCAGCAGTTTGCGCAGTCCACAGAGATGCTGAAGCGCGTGGTGCAGGAGCATCTCCCGCTGATGAGCGAGGCGGGTGCTGGCCTGCCTGACATGGAGGCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCCTACCTGGGCGCTTTCCCCATCAACCCAGGCCTCTTCATTATGACCCCGGCAGGTGTGTTCCTGGCCGAGAGCGCGCTGCACATGGCGGGCCTGGCTGAGTACCCCATGCAGGGAGAGCTGGCCTCTGCCATCAGCTCCGGCAAGAAGAAGCGGAAACGCTGCGGCATGTGCGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGTTGTAGGAATCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAATGTGAGGAACTCAAAAAGAAGCCTTCCGCTGCTCTGGAG s mm3.chr18 36125634 938 + 91041441 AGCCCCGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGACGCCGGTGgcagtagcagcagcagtaacaccaatagcagcagtg---------gcagTGGCCAAAAGGCAGGAGGAACAGACAAAAGTACCGCGGTGGCCGCCACCACGGCGCCGACCTCCGTGGCAGACGATGCCCCACCCCCTGAGCGTCGGAACAAGAGCGGTATCATCAGTGAACCCCTCAACAAGAGCCTGCGGCGCTCCCGACCACTCTCTCACTACTCTTCCTTTGGTAGCAGTG------GTGGCGGCGGAAGCATGATGGGGGTGGAGTCTGCTGACAAG------GCAGCGGCAGCCGCAGCCTCCCTATTGGCCAATGGTCATGACCTGGCTGCGGCCATGGCAGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCTGTGGCCAGCCTGCTGAGCAAGGCAGAGAGGGCCACAGAGCTGGCAGCTGAGGGACAGCTGACGCTGCAGCAGTTTGCACAGTCCACAGAGATGCTAAAGCGCGTGGTGCAGGAACACCTGCCACTGATGAGTGAGGCCGGTGCCGGCCTGCCTGACATGGAGGCTGTGGCCGGCGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCCTATCTGGGCGCTTTCCCCATCAATCCAGGCCTCTTCATCATGACCCCAGCTGGCGTGTTCCTGGCTGAGAGTGCACTGCACATGGCTGGCCTGGCCGAGTACCCCATGCAGGGAGAGCTGGCTTCCGCCATCAGCTCAGGCAAGAAGAAGCGGAAACGCTGCGGCATGTGTGCGCCCTGCCGGCGGCGCATCAACTGTGAGCAGTGCAGCAGTTGTAGGAACCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAGTGTGAAGAACTCAAAAAGAAGCCTTCCGCTGCTCTGGAG s rn2.chr18 26918011 935 - 82509072 AGCAGCGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGACGCCGGTGgcagtagcagcagcagtaacaccagtagcagcagtg---------gcagTGGCCAAAAGGCAGGAGGAACAGACAAAAGTGCCACGGTGGCTGCCAC---GGCACCGGCCTCCGTGGCAGACGATGCCCCGCCCCCTGAGCGTCGGAACAAGAGTGGAATCATCAGTGAACCCCTCAACAAGAGCCTGCGTCGCTCCCGCCCACTCTCTCACTACTCCTCCTTTGGTAGCAGTG------GTGGCGCCGGAAGCATGATGGGAGGGGAGTCTGCTGACAAG------GCTGCCGCAGCCGCAGCCTCCCTATTGGCCAACGGTCATGACCTGGCTGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCTGTGGCCAGCCTGCTAAGCAAGGCAGAGCGGGCCACAGAGCTGGCAGCCGAGGGACAGCTGACACTGCAGCAGTTCGCACAGTCCACGGAGATGCTAAAGCGAGTGGTGCAGGAACACCTGCCACTGATGAGCGAGGCGGGTGCCGGCCTGCCCGACATGGAGGCTGTGGCCGGCGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCTTACCTGGGCGCTTTCCCCATCAATCCAGGCCTCTTCATCATGACCCCAGCCGGTGTGTTCCTGGCTGAGAGTGCGCTGCACATGGCTGGCCTGGCCGAGTACCCCATGCAGGGAGAGCTGGCTTCTGCCATCAGCTCGGGCAAGAAGAAGCGGAAACGCTGCGGCATGTGTGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGTTGTAGGAACCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAGTGTGAAGAACTCAAAAAGAAGCCTTCCGCTGCTCTGGAG a score=166306.000000 s hg15.chr12_random 225799 712 + 590431 AAGGTGATGCTTCCGACGGGAGCCGCCTTCCGGTGGTTTCAGTGA------CGGCGGC--GGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACTGCTCGTGTGGTCTCCAGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCTCACAGATTTCATTCCTGTTTT--TATATATATATTTTTTGTTGTCGTTTTAACATCTCCACGTCCCTAGCATAAAAAGAAAAAGAAAAAAAT------TTAAACTGCTTTTTCGGAAGAACAACAAC-AA----AAAAGAGGTAAAGACGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACAATCAGTTTCCTTCCTG------TGTCGATGTCGATGTTGTCTGTGCAGGAGATGCAGTTTTTGTGTAGAGAATGTAAATTTTCTGTAACCTTTTGAAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACAG-TTTAACTCCACCCTCATTTA-AACTTCCTTTGATTCTTTCCGACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCACTCACGTTCATAAAGAGAATGTTGATGGCGCCGTGTAGAAG-CCGCTCTGTATCCATCCACGCGTGCAGAGCTGCCAGCAGGGAGCTCACAGAAGGGGAGGGAGC------ACCAGGCCAG-CTGAGCTGCA-CCCACAGTCCCGAGACTGGGATCCCCC--ACCCCAACAGTGAT s mm3.chr18 36127765 743 + 91041441 AAGGTGATGCTTCCGTCGGGAGCCGCCTTCCGGTGGTTTCAGTGATTTCAGTGACGGCCGGGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACTGCCCGCGTGGTCTCCGGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCTCACAGATTTCATTCCTGtttttatatatatatattttttGTTGTCGTTTTAACATCTCCACGTCCCTAGTATAAAAAGAAAAAGAAAAGAAAAAAAATTTTAACTGCTTTTTCAGAAGAACATCAAC-AACAACAAGAGAGGTAAAGACGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACAATCAGTCTCCTTCCTGTGTCAATGTCAATGTCAATGTTGTCTGTGCGGGAGATGCTGTTTTTGTGTAGAGAATGTAAATTTTCTGTAACCTTTTGCAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACAGTTTTAACTCCACTCTCATTTTAAACTTCCTTTGATTCTTTCCAACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCATTCACGTTTATAAAGGAATAGGTGGTGGCACCGTGTAGAAG-CCCCTCTGTATCCATCCATGTGTGCAGAGGGGCCA-----GAGCCCACTG--GGACTGGGAGTTCCTGACCCAGGCCCGACCATGTTGCACCCCATCGTCCCCTGATTGGGATTCCCCCTACCCCAACAGTGAT s rn2.chr18 26920137 730 - 82509072 AAGGTGATGCTTCCGTCGGGAGCTGCCTTCCGGTGGTTTCAGTGATTTCAGTGACGGCCGGGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACAGCCCGCGTGGTCTCCGGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCTCACAGATTTCATTCCTGtttttatatatatatattttttGTTGTCGTTTTAACATCTCCACGTCCCTAGTATAAAAAGAAAAAGAAAAAAAA------TTTAACTGCTTTTTCAGAAGAACATCAACAAACAACAAGAGAGGTAAAGACGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACAATCAGTCTCCTTCCTG------TGTCAATGTCAATGTTGTCTGTGCGGGAGATGCTGTTTTTGTGTAGAGAATGTAAATTTTCTGTAACCTTTTGCAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACAGTTTTAACTCCACTCTGATTTT-AACTTCCTTTGATTCTTTCCAACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCACTCACGTTTATAAAGGAAATGTTGATCGCACCGTGTAGAAGCCCCCTCTGTATCCGTTCACGTGTGCAGAGCGGCCA-----GAGCCCACTG--GGACTGGGAGTTCCTGACCCAGGCCCGACCATGTCGCA-CCCATCGTCCCCTGACTGGGACGCCCCC-GCCCCAACAGTGAC a score=7900.000000 s hg15.chr12_random 226530 35 + 590431 TCGACG--AACGCCTCTGTGTTTGAAACAAACATTCG s mm3.chr2 23855005 37 - 181423755 TCGACGTGAACGCCTCTGTGTTCGAAACCAACATCCG s rn2.chr3 44579149 37 - 165924081 TCGACGTCAATGCCTCTGTGTTCGAAACCAACATCCG a score=16610.000000 s hg15.chr12_random 226565 76 + 590431 AGTGGTAGGAGGAATACTGTCTGCTCATCTGCTCTCCAAGAAGGCTGGGGTGGAAGTAGAGGCTGGATGGCCCTGT s mm3.chr2 23859086 76 - 181423755 AGTGGTAGGAGGACTCCTTTCTGCTCATCTCTTGTCAAAGAAGGCCGGTGTGGAGGTGGAAGCCGGGTGGCCTTGT s rn2.chr3 44582788 76 - 165924081 AGTGGTAGGAGGACTCCTTTCTGCTCACCTCTTGTCAAAGAAGGCTGGTGTGGAGGTGGAAGCTGGATGGCCTTGT a score=20638.000000 s hg15.chr12_random 226808 86 + 590431 CGAGAAGTAGTCGTTTATGCTCCACTTTCAAAGAAGCAGGAGATCTTTTATACAGCCATTGTGAACCGTACAATTGCAAACATGTT s mm3.chr19 38307430 86 + 61093376 CGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTT s rn2.chr1 246055176 86 + 276301343 CGGGAAGTGGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTT a score=68874.000000 s hg15.chr12_random 226894 320 + 590431 TGGATCCAGTG-AGAAAGAAACAATTGAGTTAAGTCCTACTGGTCGACCAAAACGACGAACTAGAAAATCAATAAATTACAGCAAAATAGATGATTTCCCTAATGAATTGGAAAAACTGATCAGTCAAATACAGCCAGAGGTGGACCGAGAA-----------------------------------------------------------------------------------AGAGCTGTTGTGGAAGTGAATATCCCTGTAGAATCTGAAGTTAATCTGAAGCTGCAGAATATAATGATGCTACTTCGTAAATGTTGTAATCATCCATATTTGATTGAATATCCTATAGACCCTGTTACACAAGAATTTAAGATCGATGAAGAATTGGTAACAAATTCTG s mm3.chr19 38308502 403 + 61093376 TGTATTCTCTT-AGAAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAGGTAAGAGTTTAAAGGTACATTTAGATATTTAAATTGTGTTTTTTACATTTGTCATACTTAATGTACTTACTGTCCTTTTGTAGGACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAGGTAAAAGATTAGCTAGTAAtttgttttg s rn2.chr1 246056103 403 + 276301343 TGTGTTCTCTTTAGAAGGAAACAGTTGAGTTAAGTCCTACTGGAAGACCAAAACGGCGAAGTAGAAAGTCAATAAATTACAGCGAACTGGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAAAAGAGAGAGGTAAGAGTTTAAAGGTACCTTTAGGTATTTAAATTGTGTTTTTTACATTTGTCATACTTAACATACTTA-TGTGCTTTTGTAGGACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCAGAATATAATGATGCTACTTCGAAAGTGCTGCAATCATCCATATATGATTGAGTACCCTATAGACCCTGTCACACAGGAGTTTAAGGTAAAAGATTAGCTAGTTTTTTTCTTTG a score=43329.000000 s hg15.chr12_random 227214 178 + 590431 GGAAGTTCTTGATTTTGGATCGAATGCTGCCAGAACTAAAAAAAAGAGGTCACAAGGTG----------------------------------------------------------------------------------CTGCTTTTTTCACAAATGACAAGCATGTTGGACATTTTGATGGATTACTGCCATCTCAGAGATTTCAACTTCAGCAGGCTTGATGGGTCCATGTCTTACTCAGAGAGAGAAAAAAACAT s mm3.chr19 38310887 257 + 61093376 GGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGGTA---CTTCTGACTAGAATTTTAGGTCTTTAGTTTCTTATGAATCAGTATAGTTATTAACATAGATGTGTTAAAATTCTAGGTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAATGT s rn2.chr1 246057434 260 + 276301343 GGAAGTTCCTAATTTTGGATCGAATGCTGCCAGAACTTAAAAAAAGATGTCACAAGGTAGTACTTCTGAACAGAATTTTAGCCATTTAGTTTCTTATGAACCAGTATAATTATTAACATAGATGTACTTAAATTCTAGGTTCTGGTTTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTTACCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAATGT a score=15658.000000 s hg15.chr12_random 227392 114 + 590431 GCACAGCTTCAACACGGATCCAGA------GGTGTTTATCTTCTTAGTGAGTACACGAGCTGGTGGCCTGGGCATTAATCTGACTGCAGCAGATACAGTTATCATTTATGATAGTGATTG s mm3.chr4 143727644 117 + 152921959 CAATGCATACAAT---GAACCAAATAGCACAAAGTTTGTATTTATGCTAAGCACACGTGCTGGTGGTCTGGGCATCAATCTTGCAACTGCTGATGTAGTAATTTTATATGATTCAGATTG s rn2.chr17 65787039 117 + 93540836 TAATGCATACAAT---GAACCAAATAGCACCAAGTTTGTATTTATGCTAAGCACACGTGCTGGTGGTCTGGGCATCAACCTTGCAACTGCTGATGTAGTAATTTTATATGATTCAGATTG a score=40537.000000 s hg15.chr12_random 227506 163 + 590431 GAACCCCCAGTCGGATCTTCAGGCCCAGGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTTTATCGCCTTGTTACAGCAAATACTATCGATCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGGAAACTGGAAAAGTTGATCATCCATAAAAAT s mm3.chr19 38313492 163 + 61093376 GAATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAGT s rn2.chr1 246061029 163 + 276301343 GAATCCTCAGTCTGATCTCCAGGCCCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTCTATCGCCTCGTGACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGCTGATAATCCATAAAAGT a score=25391.000000 s hg15.chr12_random 227669 100 + 590431 CATTTCAAAGGTGGTCAGTCTGGATTAAATCTGTCTAAGAATTTCTTAGATCCTAAGGAATTAATGGAATTATTAAAATCTAGAGATTATGAAAGGGAAA s mm3.chr19 38316562 100 + 61093376 CATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGGTAAA s rn2.chr1 246064396 100 + 276301343 CATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGGTAAA a score=15903.000000 s hg15.chr12_random 227769 64 + 590431 TAAAAGGATCAAGAGAGAAGGTCATTAGTGATAAAGATCTAGAGTTGTTGTTAGATCGAAGTGA s mm3.chr19 38317375 64 + 61093376 TAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGA s rn2.chr1 246064735 64 + 276301343 TAAAAGGATCCAGAGAGAAGGTCATTAGTGATGAAGATCTAGAATTGTTATTAGATCGAAGTGA a score=90104.000000 s hg15.chr12_random 227833 575 + 590431 TCTTATTGATCAAATGAATGCTTCAGGACCAATTAAAGAGAAGATGGGGATATTCAAGATATTAGAAAATTCTGAAGATTCCAGTCCTGAATGTTTGTTTTAAAGTGGAGCTCAAGAATAGCTTTTAAAAGTTCTTATTTACA-----TCTAGTGATTTCCCTGTATTGGGTTTGAAATACTGATTGTCCACTTCACCTTTTTTATTATATCAGTTGACA---TGTA---ACTAGTACCATGCGTACTTAAATAGATGGTAATTTTCTGAGCCTTACCAAGAACAAAGAAGTATCCATATTAAGTTTAGA-TTTTCAGTTAATTTTTGAGACTGAGTAGTATTCTTGGATACAGGCTGATGTGTACTTAACCACTTCCAGATTTATACAGTCTTCCTGTGGAAGTTTAGTAAATGTCTTTTTCCCTCCTTTCTTCTAGTAATGCAGTTCATGGGC-TTTAGGTACTTCAGTTATGAAGTAGGCTTTTCATGGGGA-GA----GATTGGGATTATGCTCTCTGTTGTTTAAG-AAACTGTTTGATTTTAGAGTCTATTTCTATGAGATAGTTTACCAAATAAATGTTCCTTATaa s mm3.chr19 38319688 551 + 61093376 TCTCTTAGATCAAATGAAGGCTTCAAGACCAATTAAAGGGAAGACAGGGATATTCAAAATACTAGAAAATTCTGAAGATTCCAGTGCTGAATGTTTATTTTAATGTAGAAC---TAAATGGCTTTTAAAAACTTTGGTTTACATCCATTCTGGTAATTTGCCTG--TTGGCTTTGAAATCCATATTGTTCACTTTACTTTTATAA-TATATCAGTTTTTATAATGTA---ACTAGTAT--TGCATACTT-----GATGAAAATTTTGTGGATTTTACTTAGTATAAA-----ATTCCTA-TAAATTTAAATTTTTCAGTTAGTTTTTGGGACTGGGTAGTACTTCTGAG--TTTGTTATTATGTACTTAACCATTGCCAAGTTTAT-CAGTCTTCCTGTGGAAGTTTAGTG--------TCTCCCCCACCCCCTTTAGTAATGTAATTCATGGGA-TTTGG--ACTTCAGTTATGGAGTAGGCGTCTGATAGGGG-GAGATTGATTGAAACTGTACTTTCTGTTGCTGAAGTAAAGTTTTTGATTTTTGGG------TCAATAATTTGACTTACCAAATAAATGTTTATTATAA s rn2.chr1 246066868 558 + 276301343 TCTCTTAGATCAAATGAAGGCTTCAAGACCAATTAAAGAGAAAACGGGGATATTCAAAATACTAGAAAATTCTGAAGATTCCAGTGCTGAATGTTTGTTTTAAAGGGAAGC---AAAATGGATTTTAAAAACTTTTGTTTACATCCATTCTGGTAATTTGCCTG--TTTGCTTTGAAATTCATATTGTTCACTTTACTTTTACGATTATATCAGTTAATATACTGTAACTACTATTAT--TGCATACTT-----GAT---AATTTTGTGGATTTTATTTAGTATAAA-----ATTCTTG-TAAATTTAGA-TTTTCAGTTAGTTTTTGGGACTGGGTAGTACTTTTGAGT-TTTGTTATTATGTACTTAACCATTGCCAAGTTTAT-CAGTCTTCCTGTGGAAGTTTAGTAAG----TTTCTCCCCCACCCCCTTTAGTAATATAATTCATGGGATTTTTG--ACTTCAGTTATGGAGCAGGCTTTTGGTAGGGGAGAGATTGATTGAAATTGTACTTTCTGTTGCTGAAGTAAAGTTTTTGAGTTTTGAG------TCAATAAGATGACTTATCAAATAAATGTTTATTGTAA a score=298513.000000 s hg15.chr12_random 228459 1322 + 590431 GACTCGGTTTTAACATTTTATTGGGTAAATGATTTTAAAGGTAATAACAATAGTGTCAAAACTACTACAATATCTTTCCACAGCCATACCTTACAGACCCACATAAACCTTCTCATATTTTT-TCTTTTT--GCTCATATTTAATATTGTAAAGCCATACATGTCATATAAAATGCCCATTTCCAATAGTTTCTTCAAACTATTAAGCAATTAAATGTGGAAGGAAGGAGG----GCCTAGTTATACTGGAAGGGGTTTCAGGTAATCTGTGATGTCTTACGGTAATCAAAA-AACAGGTTACTAAGAAAGAAGGAAAAGAGGAGCTACTCCAGGTAGCTTTTTGCTCATTACAAGTCTCACCATTGTATCACCAAGAACTCATTATGCTGGTGACAGATTCAAAGTAATTTTGGGGAACATATAAAACACTAAAATAACTTAGAAACTAGATCCAAATATTTCAAAAGTAATCAACTTTGATATACAAAAGTAGTCAGAGGTGGTTACAAAA---------GTTTGTTTG-----------------------CTCAGTGCGTCTATGTACCAGCGCAGTTACTGGG--TAGAGCAAAATAAAAGGTTCATTTTCTTCTGAAATAGCAATAAAAAACAAGGAAAACATATATTTGTATATAAAGGATCAATGCTGGTCTTAAGAATAA-TGTCATCAGAAACCCTTAAATCGAGAGGCACACAACGGGTTTCCACTTTTAAAAAATAAAAGGAAAGTCACCAGTTTATTTAAATGGAGGAGGTGCTCACACCCCTCAAATAAACTTAATTCATTTTAACATCACTAGC-AAAAATCACTTAGAAACTGTACAAAAATAAAAAAGTTAACACATTTAATCCTGCAAGGTTTTTGTAAGGACTGGAAGGCAGGCTTTTGAAGCAGCATTTGGGCATGGCTGGGGGCTTCTTTGGTTTGATCTAACACACATAAGAGATGGAACCTATTCCAGATGACAGTTTCAAATTTCCTGCACATTTGAAGACAAGATAAGAGGCCAGTATACAAACTTCC-GGTGTGC-----------TGGGCACTGGGACTGTATGTGCTGGACTGAAAATCTTACAACTGCTTTAAGCTTTAAGGGTGAGGGGA----------------AGCAAGCCTTGCACTTCCTCCATCAATTTCACTGACCT-CTCGTGTTAGGGGAGACTACAGAGGGTAGTAGCACATTCTCGTGCAGTCAGAAGGCCACTTGAGGGGTGGGGGACAATTTGTT-CTTTTAGAATCTGGTACCTGGCTGACCTTGTTTAAGAACAAGAAAACCCTTCCAGAAATGGAAGCCTTTTGCTACATACC-AAAGCAAAGTACGTACTATTTCCAAGAGGAAAAATAC s mm3.chrX 124625995 1359 + 149996094 GATTCATTTTTAACATTTTATTGGGTAA----------------TAACAATAGTGTCAAAGCTACTACAATGTCTTTCCACAGCCATACCTTACAGACCCACATAAACCTTTTCATATTTTTCTCTTTTTTTGTTCATTTTTAATATTTTAAAGCCATACATGTCATATAAAATGCCCACTTCCAATAACTTCTTCAAACTAGTAAGCAATTCAGTGTGGAAGGAGGGAGGGAGGAGCTGGTTATAAC-GAAGGGCTTTTAGATAACCTGTGATGTCTCACTGTAATCAAAACACCAGGTTACTAAGAAGGGAGGAGA----GAGCTACTCCAGGTAGCTTTTTGCTTGTTACAAGTCTCACCATTGCATCACCAAAAACTCTTTATGCTGGTGACCGATTCAAAGGAATTTTGGGAAACATATAAAACACTAAAATAACTTAGAAACTAGATCCAAATATCTCAAAAGTAATCAACTTTGATATACAAAAGCGGTCAGAGGTGCTTACAAAAGTAttttttgtttgtttgttttattttgtttttttttttttctCAGTGCGTCTAAGTACCAGCGCAGTTACTGGGTCTGGAGCAAAATAAAAGGTTCATTTTCTTCTGAAACAGTAATAAAAAACAAGGAAAACATATCTTTGTATATAAAGGATCAATGCTGGTCTTAAGAATAAATGTAATCAGAAACCCTTAAATCGAGAGGCACACAATGGGTTTCCACTTGTAAAAAAGAAAAGGAAAGTCACCAGTTTATTTAAATGGAGGAGGTGCTCACACTCCTCAAATAAACTTAATTCAGTTTAACATCACTAGCAAAAAATCACTTAGAAACTGTACAAAAATAAAAAAGTTAACACATTTAATCCTGCAAGGTTTTTGTAAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTTGGTTTGCTCTAACACACATAAGAGATGGAACCTATTCCAGATGACACTTTCAAA-TTCTTGCACATTTGAAGACAGGAAAAGAGGCCAGTATACAAACTTCCCGGTGTGCGGTGTGCTGTGTGTGCAATGGAACCATTTGCATTGGAGTGGACATCCTAGG-------TGAGGTGTgggggggaggggaggggaggggaggggagAGCAAGCCTTGCACTTCCTCCATCACTTTCACTGACCTCCTCAAGGGAGGGGGGATTGGAGAGGGGAGTAGCACAT--TCGTGCAATCAGAAGGCCACTTGAGGGGG--GGGGCAA-TTGTTCTTTTTAGAATCTGGTACCTGGCTGACCTTGTTTAAGAACAATAAAA-CCTTCCAGAATTGGAAGCCTTTTGCTACATACCAAAAATAAACTACACATTGTTTTCCAA---GAAAATAC s rn2.chr7 133096860 1345 + 139049774 GATTCAGTTTTAACATTTTATTGGGTAAATGATTTTAAAGGTAATAACAATAGTGTCAAAACTACTACAATGTCTTTCCACAGCCATACCTTACAGACCCACATAAACCTTTTCATATTTTTGTCTTTTT--GTTCATTTTTAATATTTTAAAGCCATACATGTCATACAAAATGCCCACTTCCAATAGCTTCTTCAAACTAGTAAGCAATTCAGTGTGGAAGGAGGGAGG----ACCTGGTTACAAC-GAAGGGGTTTTAGATAATCCGTGATATCTCACTGTAATCAAAACACCAGGTTACTAAGAAGGGAGGGTA----GAGCTACTCCAGGTAGCTTTTTGCTTGTTACAATTCTCACCATTGCATCACCAAAAACTCTTTATGCTGGTGACCGATTCAAAGGAATTTTGGGAAACATATAAAACACTAAAATAACTTAGAAACTAGATCCAAATATCTCAAAAGTAATCAACTTTGATATACAAAAGCAGTCAGAGGTGCTTACAAAAGTATTTTTTGTTTGTTTGTTTTATTTTGTTATTTT------CTCAGTGCTTCTAAGTACCAGCGCAGTTACTGGGTCTGGAGCAAAATAAAAGGTTCATTTTCTTCTGAAACAGTAATAAAAAACAAGGAAAACATATCTTTGTATATAAAGGATCAATGCTGGTCATAAGAATAA-TGTAATCAGAAACCCTTAAATCGAGAGGCACACAATGGGTTTCCACTTGTAAAAAATAAAAGGAAAGTCACCAGTTTATTTAAATGGAGGAGGTGCTCACACTCCTCAAATAAACTTAATTCAGTTTAACGTCACTAGCAAAAAATCACTTAGAAACTGTACAAAAATAAAAAAGTTAACACATTTAATCCTGCAAGGTTTTTGTAAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTTGGTTTGATCTAACACACATAAGAGATGGAACCTATTCCAGATGACAGTTTCAAA-TTCTTGCACATTTGAAGACAGGAAAAGAGGCCAGTATACAAACTTCC-GGTGTGCTGTGTG-----TGTGCAATGGAACTATTTGCATTGAAGTGGACATCCTAGG-------TGAGGTGTGGGGTGCAGGGGAGGGGAG----------AGCAAGCCTTGCACTTCCTCCATCACTTTCACTGACCTCCTCAGGGTAGGGGAGATTGGAGAGGGTAGTAGCACAT--TCGTGCAATCAGAAGGCCACTTGAGGGGGAGGGGGCAA-TTGTT-GTTTTAGAATCTGGTACCTGGCTGACCTT-TTTAAGTATAACAAAA-CCTTCCAGAAGTGGAAGCCTTTTACTACATACCAAAAATAAAATACACATTGTTTTCCAA----AAAATAC a score=51287.000000 s hg15.chr12_random 229924 359 + 590431 TCAACCCGGTGACCGCG-CCTAGGCTTCAAGGCTCACCGCAGCGGCCCTCCTACTCGTCGCGGCGTA-CGTCCGCGGGGCTCcgggggcggggag-cggggcgtgggcgggaggaggggaggaggc-----gtgggggggggggcgggggAGGACCCCACACACCCccgccgccgccgccgccgccgccCTCCGACGCACACCACAcgcgcgcgcgccggccggcccccgccgcTCCCGTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTCCGACTTCCATGGCCAC s mm3.chrUn_random 87364408 314 - 117911829 TCCACCCGG-GCCCGCGCCCTAGGCTTCAAGGCTCACCGCAGCGGCCCTCCTACTCGTCGCGGCGTAGCGTCCGCGGGG--CCGACGCCGCGGGGGCGAAACCCCGCGCGCGGAAGGGGAGGCCGG-----GTAAGGGG---------------------ACCCCCCCCCCAAGGGCACTCCCG----CCCCAGA-------GACGCGCACCCGCG-------------GCCGCTCCCGTCCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTCCGACTTCCATGGCCAC s rn2.chrUn 32139779 304 + 55450527 TCCACCCGG-GCCCGCGCCCTAGGCTTCAAGGCTCACCGCAGCGGCCCTCCTACTCGTCGCGGCGTAGCGTccgcggggc-ccgacgccgcgggg--ggagccccg---------ggggTGGACGGNGGTTATNAACAG---------------------ACGCTCTCTAT-------cgcccg--gcccccggg-------gtcgcgcgcccgcg-------------gccgcTCCCGTCCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCAGGGCTAGTCGATTCGGCAGGTGAGCTGTTACACACTCCTTCGCGGATTCCNNNNNNCNTGGCCAC a score=1164.000000 s hg15.chr12_random 230283 12 + 590431 CGTCCTGCTGTC s mm3.chrUn_random 87364722 12 - 117911829 CGTCCTGCTGTC a score=1552.000000 s hg15.chr12_random 230319 21 + 590431 TTTGTTTTTTTTTTTTTTTTT s mm3.chr1 85487039 21 - 195869683 TTTGTTTTTTTTTTTTTTTCT s rn2.chr13 18555414 8 + 105800825 TTT-------------TTTTT a score=125769.000000 s hg15.chr12_random 230340 576 + 590431 TGATAGCCAAAAGCA-ATTTATTAT---AGTTTAGCCTCaaaaaaataaaaataaaaaaa-ttatCCAGTGGTTATGAGGAGTCTAGGAAAAACCTGTCCCAGTAATGCCAACTTGGAGGTGAAGGGCTGACTGGGGCAGCTGAGAAGTGGGACCTTCTGTTTGGCAGGCTTCCTCTCCCTTGCCTGGTCATGGTTTTCTGGTGAGAAGAGTGTTCCTGGCCTTGCTGGAGGTTCCCATGGCCCCGAACTAACAGTGTTTTTCTGAAATTT---CGACCTGCTCCGTTTGAGAGAGTAGAATTCCCTCATCAAGTCCTCCACCTCCCACTGCTCTTCCTTCAGCCTCTGGCAGCAGTGCAGGGCGGCAGGGTCGATGGGGTGAGCTTCTGTGTTGAAGATGTACCCCCCAGCCCCCAGGATGCACTCCCCATAGGGGGTGATCACCGCGTCGAAGGTGGACCCATTGTTGTGGATGAAGTTGGTTGGGTCAAACAGGAGGTAGAGGTATTTCACAGTCTCGGCCAGGAAGAACGACTCCATGCGGTTGTCCAGCTTGTGGTCTCGCAGATCTTTGAT-TGTTGCA s mm3.chr2 157548296 577 + 181423755 TGATAGCCAAAAGCAGATTTATTATTAGAGCTTAGTCTCAAAAAAATAAAAATTAGAAAA-TTATCCAGTGGCTATGAGGAGTCTAGG-AAAACCTGGCCTAGCAATGCCAGCTTAGAGGTGAAGGGCTGGCTGGGGCAGCTGAGAAGCGGGGTTCGCTGCTGGGCAGGCTGCTTCTCCCTGGGC------TGGTTTGCAGGTGAGGAGAGCGTGGCTGGCCCTGACTGGGGCTCCCAGGGCCCCGACCTCACTGTCTTCCTCTGAGCTCTCTTTGGCCTGCTCTGTTTGAGGGAGTAGAACTCCTTTATCAAGTCCTCCACTTCCCACTGCTCCTCCTTGAGCCTCCGGCAGCAGTGCAAGGCAGCAGGGTCAATGGGGTGAGCCTCCGTGTTGAAGATGTAGCCCCCGGCTCCTAGGATGCACTCCCCATGGGGAGTCATCACAGAGTCAAAGGTGGAGCCATTGTTGTGGATGAAGTTGTTTGGGTGGAACAGAAGATAGAGGTATTTCACAGTTTCAGCCAGGAAGAAAGACTCCATGCGGTTGTCAAGCTTGTGGTCCCGGAGGTCCTTGATCTGTGGCA s rn2.chr3 121323946 575 + 165924081 TGATAGCTAAAAGCAGATTTATTATTATAGCTCAGTCTCaaaaaaataaaaattaaaaaaattatCCAGTGGTTATGAGGAGTCTAGG-AAAACCTGGCCTAGCAGGGCCAGTTTAGAAGTGAAGGGCTGGCTGGGGCAGCTGAGGAGCGGGGCTCTCTGCCTGGCAGGCTGCTTCTCCCTGGGC------TGGTTTTCAGGTGAGGAGAGTGTGCCTGGCCCTGCTGGGGGCTCCCAGGGCCCCGAACTCACTGTCTTTCTCTGAGCTCT---TGACCTGCTCTGTCTGAGAGAGTAGAACTCCTTTATCAAGTCCTCCACTTCCCACTGCTCTTCCTTCAGCCTCCGGCAACAGTGCAAGGCGGCAGGGTCGATGGGGTGAGCTTCCGTGTTGAAGATGTAGCCCCCAGCTCCCAGGATGCACTCCCCATGGGGGGTCATCACAGAGTCAAAAGTGGAGCCATTGTTGTGGATGAAGTTGTTTGGGTGAAACAGAAGGTAGAGGTATTTCACAGTCTCGGCCAGGAAGAAAGACTCCATGCGGTTGTCAAGTTTGTGATCCCGGAGGTCCTTGATCTGCCACA a score=28606.000000 s hg15.chr12_random 230916 115 + 590431 AATCCGCACTCCACCTTGCTGATTTTTTCAATGGATTCCACAGCATCTCTTCCGAGTTCTAGGAGGGTGGGATCCCCCGTGGCACGGTAGAGGTACATTGCGCTTTCAATAAGTT s mm3.chr2 157551934 115 + 181423755 AATCCACACTCCACCTTGCTGATTTTCTCAATGGATTCCACAGCGTCTCTCCCAAGTTCTAAGAGAGTGGGATCCCCAGTGGCGCGGTAGAGGTACATTGCGCTCTCGATGAGCT s rn2.chr3 121326826 115 + 165924081 AACCCGCACTCCACCTTGCTGATTTTCTCAATGGACTCCACAGCATCTCTCCCCAGTTCTAAGAGAGTGGGATCCCCTGTGGCACGGTAGAGGTACATTGCGCTCTCGATGAGCT a score=40538.000000 s hg15.chr12_random 231031 166 + 590431 CTGGCCGAAGTGGGTAGCCCTCTCGCTTCTCCACTGTGTATCCCTGAGGAATGTTGTAGAATTCCGGGAGCCCCCCAAACTGCTTCCATACAGTGTAGTAGTTGAGGAAGGTCCTCATGGCATTGTCAATGTCTCCAATGAGGCTCTGAAGA----------------CCAGGCCAGTAGGC s mm3.chr2 157555204 178 + 181423755 CCGGTCGGAGTGGGTAGCCTTCTCGCTTCTCCACTGTGTATCCCTGAGGAATGTTGTAGAATTCTGGCAGCCCCCCAAACTGCTTCCATACAGTGTAGTAGTTGAGAAAGGTCCTCATGGCATTGTCAATGTCTCCAATAAGGCTCTGTGGG----AAAAAATGCTCATCAGGTCAGTGGAC s rn2.chr3 121330158 182 + 165924081 CCGGTCGGAGTGGGTAGCCTTCTCGCTTCTCCACTGTGTATCCCTGAGGAATGTTGTAGAATTCTGGCAGCCCCCCAAACTGCTTCCATACAGTGTAGTAGTTGAGGAAGGTTCTCATGGCATTGTCAATATCCCCAATAAGGCTCTGTGGGGGAAAAAAAAAGATCATCAGGTCAGATGAC a score=8361.000000 s hg15.chr12_random 231197 104 + 590431 CTCCAAGGACTGGAAGACTGGCATGGACACAGTCCCCTTGTACATCTGAACCCACAGGTACCAGTCATCGAAGCGGGTGTAGTTCCGGATGGCTTTGTTATACT s mm3.chr2 157557137 104 + 181423755 CTCCAAGGACTGGAAGACAGGCATTGACACGGTCCCCTTGTACATCTGCACCCAGAGGTACCAGTCATCGAAGTGCGTGTAATTCCGGATGGCTTTGTTGTACT a score=32570.000000 s hg15.chr12_random 231301 124 + 590431 CTAGGAACATGGCCATGAGCTTCTTATCCTGAAGCAGGATGGCTCCTTTCACCAAGTACTCAAAGTAGGAGTCCACGCCAGCCCCGATGCCTGCGTCCTGGGCCACCCACTTGCCAGTGAGCAC s mm3.chr2 157559610 124 + 181423755 CTAGGAACATGGCCATGAGTTTCTTATCCTGAAGAAGGATGGCTCCTTTTACCAGGTACTCAAAATAGGAATCCACACCAGCCCCGATGCCTGCATCCTGGGCCACCCACTTGCCAGTGAGCAC s rn2.chr3 121336528 124 + 165924081 CTAGAAACATGGCCATGAGCTTCTTATCCTGAAGGAGGATGGCTCCTTTTACCAGGTACTCAAAATAGGAATCCACACCAGCCCCGATGCCTGCGTCCTGAGCCACCCATTTGCCAGTGAGCAC a score=57059.000000 s hg15.chr12_random 231425 232 + 590431 ATCAATGTGGTTGCCGACCAGCCCGATATCTGACCGGCTCTCCCAGAGGCGCATCAAAGCCACTCTGGCCACATCTTCGAACACCGGGTCACCAGTGAGGCTGCTCAGGGTGGCAAATTCAACAATGAAGGTCCCAATCCCTGCCGTACAGGTGACAGGGGTCTCTCCTGGGTTCACGCCATGAAGTAAGTTCACTGTTCCATATGGCATGCCAGTGGGGGTCTGAAAGGCT s mm3.chr2 157562264 232 + 181423755 ATCCAAGAGCTGACCTACCAGCCCGATATCTGACCGGCTCTCCCAGAGACGCATCAGGGCCACTCTGGCCACATCTTCAAACACAGGGTCACCGGTGAGGCTGCTCAGGGTAGCAAATTCCACAATGAAGGTCCCAATCCCTGCTGTACAGGTAACAGGGGTCTCTCCAGGGTTCACGCCATGAAGCAGGTTCACAGTTCCATAGGGCATGCCCGTGGGGGTCTGAAATGCT s rn2.chr3 121339008 232 + 165924081 AGGCAAGAGCTGACCTACCAGCCCAATATCTGACCGGCTCTCCCAGAGGCGCATCAGGGCCACTCTGGCCACATCTTCAAACACAGGGTCACCGGTGAGGCTGCTCAGGGTAGCAAATTCCACAATGAAGGTCCCAATCCCTGCTGTACAGGTAACAGGAGTCTCTCCAGGGTTCACGCCATGAAGCAGGTTCACAGTTCCATAGGGCATGCCCGTGGGGGTCTGAAACGCT a score=29602.000000 s hg15.chr12_random 231657 126 + 590431 GGGAGGAGTTTTCGGGCCGCCTCCTCAGCCATTCTCAGGAGAGGCCCGGAACAGGGCCATCCAGCCTCTACTTCCACCCCAGCCTTCTTGGAGAGCAGATGAGCAGACAGGAGTCCTCCTACCACT s mm3.chr2 157564543 126 + 181423755 GGGAGGAGTTTCCGGGCTGCTTCCTCCGCCATCCTGAGGAGAGGCCCAGAACAAGGCCACCCGGCTTCCACCTCCACACCGGCCTTCTTTGACAAGAGATGAGCAGAAAGGAGTCCTCCTACCACT s rn2.chr3 121341167 126 + 165924081 GGGAGGAGTTTTCGGGCTGCTTCCTCCGCCATCCTGAGGAGAGGTCCAGAACAAGGCCATCCAGCTTCCACCTCCACACCAGCCTTCTTTGACAAGAGGTGAGCAGAAAGGAGTCCTCCTACCACT a score=6267.000000 s hg15.chr12_random 231783 31 + 590431 CGAATGTTTGTTTCAAACACAGAGGCGTTCG-- s mm3.chr2 157568713 33 + 181423755 CGGATGTTGGTTTCGAACACAGAGGCGTTCACG s rn2.chr3 121344895 33 + 165924081 CGGATGTTGGTTTCGAACACAGAGGCATTGACG a score=19795.000000 s hg15.chr12_random 231814 94 + 590431 TCGACGCGGCCGCGTCGACACCTCGGGGACGGAAGTGCGAGTCCGGGCCCTGTATGACTATGAGGGGCAGGAGCATGATGAGCTGAGCTTCAAG s mm3.chr15 20450961 89 - 104111694 TTGATGAGGACACG-----ACCTCAGGAACAGAAGTGCGAGTTCGGGCCCTCTATGACTATGAGGGGCAGGAACATGATGAGCTGAGCTTCAAG s rn2.chr7 29223839 89 - 139049774 TTGACGAGGACACT-----ACCTCAGGAACAGAAGTGCGAGTTCGAGCCCTCTATGACTATGAGGGACAAGAACACGATGAGCTGAGCTTCAAG a score=202479.000000 s hg15.chr12_random 231908 1700 + 590431 GCTGGGGATGAGCTGACCAAGATGGAGGACGAGGATGAGCAGGGCTGGTGCAAGGGACGCTTGGACAACGGGCAAGTTGGCCTATACCCGGCAAATTATGTGGAGGCGATCCAGTGATGAGTCGGGGACAGGCCAGCGGGGGGGACGGAGGCGGCGGGCCCAGGAG---------------------------------------CCTCAGCCAGCCACGTGGGCATCCACTCCTTTTCCTGCAAGAGATGATGGTTCCATTGCTCTTGGCTTCATGGTGTTCCTGGAAGGCAGATGAGCTGGTCATTTCGCCTGGGACTCGGCACCTTTCCGAGTGCAGCTGGAGGGATCTGAGCGCAGGAAGACGCAGAACAACAGAAATAGCC--GCCCCTCCCCGCCCACTGTGCCTGTTGGCCTATCATAGATCTCTATGTTCTTGACTTTGTCTCTCCTTTCCGAGTCAATGGTGGGTTACACTGA-TCTTGTTCCACTGATTACTCTCTCTGACGAGTCCATCACCTGCAACTTAAATGAACA-AGCTTACATCCCA--TTTTGAGTGAAGATTTTGAGGTTTTTAATTTAAAGGCTGTGTACAGTTATACTTTTTTATACACCTGTTCATTTCTACTTAAATTATGGCACAGATTGATGCGCACCAGTCTTGAGGAAACG---ATCTCCCTATTCCCTTACCCTGTTACTCAGCCATGCCGTGTGTAGGCTTAGCCTCAGGTGGCAGATGTTTGAGAAAAGGAATTATGCCAGGAAGGTGGGACCGGGTTATGGTCGGGTTTCTATTGGGAATGCTCTTTGTGCTTTTGGGCATCTGAATGGAAGCTTTACATAGAACCTTAGGTAGAACTCCCCCAAATCGCCATATTTAAAAATTATTTTCACTCTATTCTTGCTTAAAACTGTACTCTTTTGCAAATTAACAATTTTATCACTGATTCAG--AGTTAAAA---AGAAGACTAACTTTTCA-AGCAAATGCATCTGTA----AAGATGCTTTAGATTAGACTGTCATGTCTCAGTGTCTATCTGTATATATTATTTGATATTCAGAGAATCTAAAGCACTCGTCTACTGTTTTAATGAGATTTAACAGCTTTTAACAGTGAGTTTCGTTTGTAAACTGCTTGAAGTCTGTGGCATTCAGGCACACATCTGGCTGGCCGGCTGGGTCTCCTCCCGGGCTCAGTGGGCCTGGGGCCTCTCTGACGTGGTGCCTGCTGGAGGGAGGCTCGTCGTCACCAGCTGACTGCTGGTCCGGCTTCTGACCGGCCTTTGTCCTGGCTCCGTAGCAGAACACTGTAAAAGTGCCCGCGTCTTTGCAGTAGTTGCAGATTT--CAGTCGTCGTGTTACTTGTGCACAAAC-----AGAAGCTGGGTCT------------------------------------------TACCCGCA---------------------GCACGAGTGTCTCGGGCTGCCCGGAGTCGCCCGGGAGCAGGTGCTGCAGCCAGAGTTACGCGGGGGCCACGCGGGCCGGCGGGGGTGGGGGGAACGTGGGGGAACCTGTGTTTCACGTGACTCAG-CA--GTGCC-CGCCGC-CGTCACCAGCTATGCATTCACTCCGTTTCCAG--TGAGCAGATGTCTTGCTTGGAAAGTGGACCTGTGTCTGTGTCTGTCCTGAGAACTTACCAGCAGAAATCCTCATTTCTGTGCTACGGATTTACCAAAAATTGTCAAGTCTTTTTCAGTTTAACAGTTCCTTTAAATGTGTAGTATTTGAG---------GAAAAAAATCAATAAACAGTTGATCTCGTG s mm3.chr15 20452318 1601 - 104111694 GCAGGGGATGAACTGACCAAGATAGAGGATGAAGATGAACAGGGTTGGTGCAAGGGACGTTTAGACAGCGGCCAGGTTGGCCTATACCCAGCCAACTATGTCGAGGCTATCCAGTGACAGCCCATGGGCAGGCTGGC-GGAGAGACGGAAATGGGCAGTTCAGGAGCTCCGTTAGCCTTGGCCTGGGCAGTGACACCTCTAGTGCCCCCAG-CAGCCATGTAGGCATCCACTCC---ACCTGCAAAAGACGATGGCTCTGTTGTTCTTGGCTTCCTGGTGTGCTTTGAAGGCAGATGAGCTGGTGATTTCATTGGGCACTTGGCCCTTTTCCAAGCACATCTGGGCAGATATAGACACAGGAAGATAGGGTCCAACAGCGAGAGCCAGGCCCCTCCCCACCCCCACCAGCTCTC--TCTATCATGGATCTGCACCTTCTCGCCCTTGTCTCTCCT----GAGTC-ATGACGGGTCATACTGATTCTTGTTCCACTGATGATTTTCTCTGATGAGGTCCT-ATCTGCAAGGTCAATGAGCA-GACTTACATGCCATCTTCTGAGTAAAGAGTTTGAGG-TTTTAATTTAAAGGCAATGTACAGCTATACTTTTTTATATGCTCTTCCAGT--CAGTTAAATTATGGCCTACACTGATCT--------------GAGATG---TTCTCCACGTGAGCTGTCTTCATTTCTCTG---TGCTATGTCCAGAT-----------------------------------------------GTGGGGTT--GCTGCAGCCGGGGTTCTATGGCAAGTGCCAGTTGCA-----GGGC----------------------TAACCTTGTGCAACGTTCCCCAACACTTCCACATACAGAAATTATTTTCACTCTATCCCTGCTTCAG--------TTTTTGCAGATTAACAGTTCTATTAGTGATTTGGAAAGTTAACAGTAAGAAGACTAACTTTTCAAAACAGTTGCATCTGTAGATTAAGATGCTTTACATTAGACCGTTGTGTCTCGATGTATATCTGTATATATTATTTGATAATCAGAAAATCTATAGAGTTCACCCACTG-TTGAATGAGAGCTGGTGGCTTCTGACAGCAGATCTGGTC----AACTGCTTGAAGCCCATGGCATTGAAGCACAGGCACGGCTGGTTAACGGTG--CCCACCCAGTTAGGATGTGGCTCTGGCCTCT---GAGTGGAG-CTGCTGGGAAGA----------------CTGA-------------TTCTCATTGGCCTGGGCTCCAAGCTCATGACCGAGCACTGGAAAAGCTCCTAGGACTTGGTAGTAATCGTAGACTTCACAGTCCCTGTGTCACT----CACTGGAGAGCTAGAGGGAGGGGTTCGACACCCTCCAC-----------------------------cacacacacacacacacacacacacacacacacaAGTTCCTCCAGTTGCCC----TTGTCC----TCAGGTGCAGTGG---GACTGTTGTGAGCCCCA------------GGGATGGGCACAA----AGAGGACTTTTATTTTGT-TAGCTCGGACA--GTGCAGTGGTGCACATCAGCAACT-TGTATTTCTTCGGTGTTTGGCACGAGC-ACTGTCTCG--------------CTGTGGCTGTG--TGTCATGAGAACTTACCAGCAGAAATCCTTGTTCCTAAGCTACAGAATGACCAAAAGCTGTCAAGTCCTTAAT-GTTTAGAAACTCCTTAAAATGTATAGTATTTTAGAACAACAACAACAAAACTCAATAAACAGTTGATCTTGTG s rn2.chr7 29225384 1608 - 139049774 GCAGGGGATGAGCTGACCAAGATAGAGGATGAAGATGAACAGGGTTGGTGCAAGGGACGTTTAGACAGTGGCCAGGTTGGCCTATACCCAGCCAACTATGTCGAGGCTATCCAGTGACAGTCCATGGGCAGGCTGGC-GGAGAGATGGACACGGGCAGTTCAGGAGCTCCGTTAGCCTTGACCTGGGCAGTGACACCTCTAGTG-CCCCAG-CAGCCATGTAGGCATCCACTCC---CCCTGCAAAAGACGATGGCTCTGCTGTCCTTGGCTTCCTGGTGTGCTGTGAAGGCAGATGAGCTGGTGATCTCACTGCACACTTGGCCCCTTTCCAAGCACATCTGGGCAGATCTGGGCACAGGAAGATACGGTCCAACAGC--GAGCCAGGTCCCTCCCACCCTCCA-----GCTC--TCTATCATGGATCTGCACCTTCTTGCCCTTCTCTCTCCT----GAGTCAATGACGGATCATACTGATTCTGGTTCCATTGATTATTTTCTCTGATGAGGCCCT-ACCTGCAAGTTCAGTGAACATTTCTTACGTGCCAT-TTCTGAGTAAAGAGTTTGAGG-TTTTAATTTAAAGGCAATGTACAGTTATACTTTTTTATATGCTCTTCCAGT--CAGTTAAATTATGGCCTACACTGATCT--------------GAGATGTTCTTCTCCACGTGAGCTGTCTTCATTTCTCTG---TGCTGTGTCCAGAT------------------------------------------------TGGGGTT--GCTACAGCAGGGGTTCACTGGCAAGTGCCAGTTGCA-----GGAG----------------------TAACC-TGTGCAATG-TCCCCAACACTTCCATATTTAGAAAGTATTTTCACTCTATCCATGCTTCAG--------TTTTTGCAGATTAACAGTTTTATTAGTGATTTGGAAAGTTAACAGTGAGAAGACTAACTTTTCACAACAGCTGCCTCTGTAGACTGAGGTGCTTTACATTAGACCGTCGTGTCTC-CTGTATGTCTGTATATATTATTTGATA--CTGAGAGTCTCTAGAGTTCACCCTCTG-CTGAATGAGAGCTGGTGGCTTCTGATAGCAGATCCTGCC----AACTGCTTGAAGCCCACGACATTGAAGTCCAGGCATGGCTGGCTAACAGC---CCCACCCAGTTAAGATGTGGCTCTAACCTCA---GAGTGGAG-ATACTGGGGAGA----------------CTGA-------------TTC-CACTGGTCAGGGCCCAAGCTTTGTGAC--AGCACTGGAAAAGCTCCTAGGATTTTGTAGTAGTCACAGGCTTCACAGTCCCTGTGTCACT----CACTGAG-----AGTGGGAGGGGTTCAACTCCCCCCCCCCCCCGAAacacacacacacacacacacacacacacacacacacacacacacacacacacacGTGTTCCTCCAATTGCCC-----TGTCC----TCAGGTGCAGTGG---GACTGTTATGAGCCCCA------------GGGATGGGCACAA----AGAGGACTTTTATTTTGT-TAGCTCGGACAGTGTGCAATGGTGCACATCA-CAACT-TGTGTTTCTTCAGTGTTTGGCACGAGC-GCTGTTTTG--------------CTGTGGC--TG--TGTCATGAGAACTTACCAGCAGAAATCCTTGTTCCTAAGCTACAGAATGACCAAACGCTGTCAAGAACTTAAT-GTTTGGAAACTCCTTTAAATGTATAGTATTTTAGAACAACAACAACAAAACTCAATAAACAGTTGATC-TGTG a score=160329.000000 s hg15.chr12_random 233954 1017 + 590431 TCTCTCCAAGTCCTTCCTTTAATGTCAGGTAGTGCTTCAACCCAAA-CACAAGCAGTATACATACCATAGA-AAAAGGGACCTGAGGGCATCTGAGT----CATGCATGGTGTGGTACATAAAAACCTTGGCCCAGCCCAAAG-GAGCATTCAAGGGCCTGGAAGAAAGATGGTTTGCTCTTTCCCCCTCCTCCTCTCTCTTTCCTA-CCGGGCTTAAA--GTCCGTGGAAGAGAAAGTT-TTTAATCAGTGGAACTGATAAGGCCTCAGGGCCGTGGAGGGTAGATTTGGTTGTTCAGTAATATAAAATGTGT-TTAAGAAAAAAAACAGCCCAGGCTTCCCAGCAGTAGCCCATGTGTTGGCTGGTTCAGCAGCCTGACCTCTACATCTAGACAAGGAAGTGAGGAGGGTGATTGCTGGGCATTGGTGTAGGTTTATGACGGAGCAGCATAAGATTTTCCGTGCCCTGTGAACACGTATACAAACATTCATAGCCCCTTCCCCTCAGCCCTGCTCTGCTGCAAGGAAGCTGCTGAGAGTGAGTGACAGCTGGGCACAAAGTGTCTTGTGAGACCAGCTATAGGGTCTAATGCAGTG--------AAGTCAGTCATTTAGGACCTATTTTCACACAGGGGCAAGGAAAAACCAGAAACAACTTCTCTCTTACCCTTTAAACTAAGATACTTCATTCTACACGATTACCTGAAACAAATGTCTCAGGTC---AAATCACAAGCCTTAGCTTCTGCTAGGGTTTGAAGTCTGGGAAATA---TATAATCCAGCTCTTCTCTTTCAGTCCAAGCTCTAGCTTGTCAGCAAGACTGTTGCAGAAGATCTATCCTTAA--GAGGCAGAAACATCTGCGGTGAGGAAGGCAGCTATTGAAGGTATTCCAGGAGCATGAGACTGAGTTTGCAGAGCTGAGGGTTGTCAATTTCCTTTTCTACTGATATCTTCTTCCTTTAGAGCAAACTTCCTCCTTAGGACCTCAGAGATAAGCACAGCAGGGTCTTCCTCCTTCAATAAACTCCGGTTC s mm3.chr4 132585440 951 + 152921959 TTTCTCCAAATCCTTCATTTAATATCAGGTAATGCTTCAACTCACA-CACA--CAGTATTCATATCATAGAGAAGAGGGCCCCAAGGGCCCCTGAGTGAGTCATGCATGATGCAGTAAAT-AAAGTCTTGGCCCAACCCAGAGAAATCGGTCACTGTCTTAGAAG---GAGGATAC-CACACTCTTTCTCCTCATTTTTCCTTCCTAGATGGACTTAGT----CCATGGAAGAAGAAAAT-TTCAATCAGTGGAACTGAGGAGGCCC--------TGGAGGGTAGATCAGGTTGT--AGTTTTATAAAATATGTTTTAAG--AAAAAATAGGCCAGGCCTCCCTGCAGCAGCCCAGATGTTGGCTGGTCCAGTGGCCTGGACTCTGTAGCTAGA--------GGGGAAGGGTGACTGCTGGGCACTGGGGCAGGTCTAGGATGGAGCAGCAGAAGACCTT------CCTGTGAACATG------AACATAAATGGCCGCTCCCCCTTAGCCCAGTGGCGCTGCAGGGAAGCTGCTGA----GAGCCACAGCTGTGCACG---TGTCCAGCGAGACCAATTATGGAGACTAATGCAGTGAGTTAATTAAGTCGTTCATTGAGGGCTTAGTTTT---CAGAGACAAGAAAAAAC------AAACTTC------ACCCCTTAAGCAGATACACTCCACTCTACCCAATTATCTGTAACAAATGCTTCATCTCAAAAAACCATAGACCTTGGCTCCTGCCAAGGCTT-AAGTGCAGGAAACAGCGAGTAATCCAGCTCTTCTCTTCTAGCCCAAGCCCTA----GTCAGCAAGACGGTTGCAGA--------TCTCG---GAGACAG--ACATCTGCGGTGAGGAAGGCAGCTATTGA----AGTTCAGGAGCAAGAGAC--AGTTTGCAG---TCAGTGCTGTCAGTTCCCTTTTCTACTGATGTCTTCTTCCTTCAGGGCAAACTTCCTCCTGAGGACCTCAGAGATGAGGACAGCAGGGTCTTCTTCCTTCAGTAAACTCCGGCTC s rn2.chr5 170574591 954 + 191625135 TTTCTCCAAATCCTTCATTTAATATCAGGTAATGCTTCAACTCAAAACACA--CAGTATTCATACCATAGAGAAAAGGGCCCTGAGGGCACCTGAGT----CATGCATGATGCAGTAAAT-AAAATCTTGACCCAACCTAGAGAGATCAGTCACTGTCCTAGAAG---GATGGTATGCTCTTTTTGTCTCCACATTTCTCCTTCCAAGATGGACTTAGTAAGTCCATGGAAGAAAAAAAAATTCAATCAGTGGAACTAATGAGGCCC--------TGGAGGGTAGATCAGGTTGT--AGTTTTATAAAATGT---TTAAG--AAAAAACAGGCCAGGCCTCCCTGCAGCAGCCCAGATATTGGCTGGCCCAGTGGCCTGCCCTCTGCAGCTAGA--------GGGAAAGGGTGACTG-TGGGCACTGGTGTATGTCTGTGATGAAGCAGCAGAAGACCTT------CCTGTGAGCATG------AACT--AACAGCCGCTCCCCCTCAGCCCTGTGGTGCTGCAGGGAAGCTGCCGA----GAGTGACTGCTGTGCACAACATGTCCAGTGAGACCAATTATGGAGTCTAATGCAGTGAGTTAATTAAGTCATTCATAGAGGGCTTATTTTT---CAGAGACAAGAAAAAAC------AAACTTC------ACGCCTTAAGCAGAGATACTCCACTCTACCCAATTACCTGTAACAAATGTCACATCTCCAAAAACCATAGACCTTAGACTCTGCCAGGGTTT-AAGTGCAGGTAACA---AATAATCCAGCTCTTCTCTTCCAGCCCAAGCCCTA----GTCAGCAAGACTGTT-CAGA--------TCTCAACTGAGACAG--ACATCTGCAGTGAGGAAGGCAGCTATTGAAGG-AGTTCAGGAGCAAGAGAA-GAGTTTGCAG---TCAGTGCTGTCAGTTTCCTTTTCTACTGATGTCTTCTTCCTTCAGGGCAAACTTCCTCCTAAGGACCTCAGAGATAAGGACAGCAGGGTCTTCTTCCTTCAGTAAACTCCGGCTC a score=81954.000000 s hg15.chr12_random 234971 325 + 590431 AGATCTTGACTCTGTTTCATTCGGTGAAAGTCCTTCAGGATACCCATCATGTCTGCAAAGCTGCTGGCCTTGGACAAAGAGACGCAGTCATCCTCTTCAGACGAACTGCAGGCAGCTTTGTGTTCTGGTTTGCAACATTCAGGGCTGGCAGAACAAAGCAGGGGGACTGATGGAAGCTCAGGGACCTCCACCTCTGTCTCCTCGGTGATGTCACTAATGACAAAGGAAGTTGTAGAGTGGAATGAGGATCCAAAACAAGGTAAGGGAGAAGAGACATTTGAACTTCCTGGAGATAAGAAATCTGGCGTTAATGAAGCCGAAGCTG s mm3.chr4 132588967 325 + 152921959 AGGTCTTGGCTCTGTTTTATCCGGTGAAAATCCTTCAGGATGCCCATCATGTCTGCAAAGCTGCTGGCCTTGGACAGAGAGATGCAGTCATCCTCTTCAGATGAGCTGCAGGTAGTTTTGTGTTCTGGTTTGCAACACTCAGGGCTGGCAGAACAAAGTAGGGGGACGGTTGGGAGCTCAGGGACCTCCACCTCCGTCTCCTCGGTGATGTCACTAATGACAAAGGAAGTTGTAGAGTGGAGGGAGGACCCAAAGCAAGGCAAAGGCGAAGAGACATTCGAACTTCCGGAAGAGAAGAAATCTGGTGTTAATGAAGCCGAAGCTG s rn2.chr5 170578050 325 + 191625135 AGGTCTTGGCTCTGTTTTATCCGATGAAAATCCTTCAGGATGCCCATCATGTCTGCAAAGCTGCTGGCCTTGGACAGAGAGATGCAGTCATCCTCTTCAGACGAGCTGCAGGTAGTTTTGTGTTCTGATTTGCAACATTCAGGGCTGGCAGAACAAAGCAGGGGGATTGTTGGAAGCTCGGGGACCTCAACCTCAGTCTCCTCAGTGATGTCACTAATGACAAAGGAAGTTGTAGAGTGGAATGAGGATCCAAAGCAAGGCAAAGGAGAGGAGACATTTGAACTTCCTGAAGATAAGAAATCTGGCGTTAATGAGGCCGAAGCTG a score=75638.000000 s hg15.chr12_random 235296 331 + 590431 CATCAGCTGCCACTATCTTTGCAATCTGGCTGCGCAAGTGGCTCAGCTCGTCCTGCAGCTCAGTAGTGCGGCTTAGGGCTGGCAGAGCTGGCTTCTTCAGGGCCAGAAGCCTCTCCTCGGACCCACGCAGGTTGGGAACAGAGGCATTGCGCTGCATGACAATCAGAGGGCTGGGTTTCCAGGTGTGCCTCAGGGGGCGCGTATCACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGACCCGGGCATATGTCTCCTCTTCATCCGCAGCAATCCAGGCGATGTCAGCCAGGGTAGGGACTGGGGGCACATCTCTCAAACACAGGTCAGAGATGTTGGGCAGGGTCTCAAAGGACGC s mm3.chr4 132590156 524 + 152921959 CGTCTGCCGCCACGATTTTAGCGATCTGGCTGCGCAGGTGGCTGAGCTCATCCTGCAGCTCAGTGGTGCGGCTCAGGGCAGGCAGGGCCGGCTTCTTCAGGGCCAGGAGCCTCTCCTCAGAGCCACGAAGGTTGGGCACTGAGGCATTACGTTGCATGACAATCAGAGGGCTAGGCTTCCAGGTATGTCTCAGAGGGCGTGTATCACTCCTGGGCCAGAGGAAGAGAAGTATGTCTTACTACAGACAGCTAGCTGCTGTATGTCACTGATTAAATTCCTTCACCCCACAG--TCCACTCCCCTGTAAGCCCATAACTCTCAATCCTATCGCCCCTCAGCATCTTATAAGCACCCTCCTTG----CTGACACTTCTGGTAGAAACTGCCCAGCA----------------------CAGCAGAG------------CAGCTACCTGACCCGAGCATATGTTTCCTCTTCATCTGCAGCAATCCAGGCAATGTCAGCCAGAGTAGGGACTGGAGGGACATCTTTCAAACACAGGTCAGAGATGTTGGGCAGGGTCTGTGAGAAAGC s rn2.chr5 170579280 562 + 191625135 CATCTGCTGCCACTATTTTAGCAATCTGGCTGCGCAGGTGGCTTAGTTCATCCTGCAGCTCAGTGGTGCGGCTTAGGGCAGGCAGGGCTGGCTTCTTCAGGGCCAGGAGCCTCTCCTCAGACCCACGCAGATTGGGCACTGAGGCATTCCGTTGCATGACAATCAGAGGGCTGGGCTTCCAGGTATGTCTCAGAGGGCGTGTATCGCTCCTGGGCCAGAGAAGGGAAAAGATGTCTTACTACAGACAGCTGGCCACTGTGTATCCCTGATTAAATTCTTTCACCCCACAGGTCCCACTTCCCTTTAAGCCCACAGCTCTCAATCCTATTGCCCGTCAGCCTCTTATAAACACCCTCCTGGCTCACTGCCTCATTTGGTAGAAACTG--CAGCAACACCTCGATTGGTAGAAACACCAGCAGGGCGGCTGCTGCCTCAGCTACCTGACCCGAGCATATGTCTCCTCTTCATCTGCGGCAATCCAGGCGATGTCAGCCAGAGTCGGGACTGGAGGCACATCTTTCAAACACAGGTCAGAGATGTTGGGCAGGGTCTGTGAAAAAGC a score=23111.000000 s hg15.chr12_random 235627 94 + 590431 CCGGGCACACGGCTTCAAGGGTAGGTTGGTCCCAATTCTTCTTACTACACTTCGAGCAGCCCCATGTGGCTTGTTTTGCCAGATTGGGATGGTC s mm3.chr4 132592034 94 + 152921959 CCGTGGACAGGGCTTCAGGGGGAGATTGGTCCCAATTCTTCTTACCACACTTCGAGCAGCCCCATGTGGCTTGTTTTGCCAGATTGGGATAGTC s rn2.chr5 170581254 94 + 191625135 CCGTGGACAAGGTTTCAGGGGCAGATTGGTCCCAATTCTTCTTACCACACTGCGAGCAGCCCCATGTGGCTTGTTCTGCCAGATTGGGATAGTC a score=22477.000000 s hg15.chr12_random 235721 116 + 590431 ACAGTGGCTTCCATTCCTGACATTTGAACCAGCTCCTGCACTTGAAGGACAAGGCAGCCACTGGGCAGCTCCGGGATGCGGGAGGCGTGACTCCTTCATATCAGGCCATCTCTGAG s mm3.chr4 132592506 107 + 152921959 ACATTGGCTTCCATTCCTGATGTTTCAGCCAGCTCCTGTACCTGAAGGACGAGGCACCCACAGGGAAA---------GCTGGAGGGGTGGCTCCTTCATATCAGGCCATTTCCAGG s rn2.chr5 170581719 107 + 191625135 ACATTGGCTTCCATTCCTGATGTTTCAGCCAGCTCCTGCACCCAAAGGACAAGGCACCCACAGGGAAG---------GCTGGAGGTGTGACTCCTTCATATCAGGCCATTTCCCGG a score=265291.000000 s hg15.chr12_random 235968 1272 + 590431 ACTATAAAAGTTATTTATTCGCTATACACAGAACATGTCCCCTATAAAATGTACATGTAAATCACTAAAAAGTATAATTTGGTGAACATTTTCTCAATTACAGAACATACTAAATCAGTTAGGATAACAGCTCTCTGTCTGCCTCAAAATAATCTAATTATAGCACCCA--GTCTCCTTTATACCTAATGCAAAGTTAAATAC---TTATTTTGGGGGTTATATCCTAGCATGTGTTTGGTGAGGC--AGAGTAAACAATTTATTATAACTCTAGTATATTACAGTCACTGCACAATAAACCAGTTTATTACAGATTAAATCATTTTTTCATTATTTATAATAATGTGAT----CAAATACTGGATACTTTTAAATGGCAGATAACCACACAATTACTTATCCTTGATCGTATATTGTGTTCTATAATTACATT--GATACGAATGGTGTAAAATATTGTTATGAATAACACACCTCAAACAAAACAATGAGGCCATACTGTAATGATTCACTAGATTGTGCTCAGTAGACATTTACTGAATAagggaattatctatttttct---caattatccagtacaatgatttgcccacagtaagggctcaataaatatttgctgaatATACTGACTAGGAAAGAGGTGAGAAGAGATGGGCCCTCTTAGCTGGATGTCAAATATAATTGGAATTTACCTGGGAAGGAGTAGTTAAGACAGATGTAAACTGCATGTGGTGTACAAGTAAATAAACACAGATGCCAACAAAGCAAATGATTAAGCAGAAAACACTGGCACCAAAATAAACAAAGGCAAGATTTGCCAATAATGGCA-AAAATGGAACT---------------------------TTTATATTGGACCATACCTTTTCCCACCCAA-TTCAGTTTGAGACAGACCAACAGAGGCACTGTAA-GAGACTATGGCTGTCTTCCTTGATATTCAGACATCCTAGTTTCCAATAATTTATTATGGACCTGTTACCCATGAATCAATATAAACCTATTCATATTTAGGGATTAGTTTCCACAAGTACAAAGTTGAATTTCCTTTTATTTGTCCTAAAATGCTTACTTTCAAACTTGAAGGGACTTCAATTATTCCATGTAGTTTTCGATAACATTCTTTTATCTTTTCAGACCAGAGTCAAAATATTCGTACAGTATTCATACTGCAGCaccttccacccaccctttggtcgcttgaactgcccttctttggttc-tttttccgctttcagatctttcttgaagtgtagtaagcagaactgtactgggtattccagctgcagtttggtcT s mm3.chr12 107432747 1255 + 114462600 ACTAT-AAAGTTATTTATTAACTATACACATAATATGTCCCCTATAAAATGTATAAGTAGATCACTAAAAAGTCGTATCCGGTAAACACTTTCTTCAATAGAGAATATACTAAGTCCATTGGGATAACAG----CTGTCTGCCTCAAAATAATCTAATTATAGCACCCAGGGTCTGCTT------TAATGTAAAGTTAAATACTTGTTACTTTGGGGATTACCT------ATTTGCTTGACAGAGCCAAGAGTTA------------TACTCTAGTATATT--AATCACTGCACAACAGATCAGCTTATCACAGGT-------TTTCTTCATTATTTGTAGTAATGGGATACAACAAATACTAGATACTTTTAAGTGGCAGACAACCATAAAATTACTTTTCTATGATAGTATATTGGGTTTTATAATTACTCTAGGATATGAGTGGTATAAAATATTACC----ATAATACACCT----CAAGATAATGAGGTTATACTGTAATGATTCACTAGATTGTGCTCAGTAGGT-TTTACTAAATAAGGA----ATCTGTTCTCCTCTCCAATTATCCAGT---AtgttttgcccacagtaagggttcaataaatatccgttgaaCATACTGTCTACACAGGAGTTGAGAAGAGATGGGCCCTCGTGGGTGGATATCAAGTATAAGTGGAATTAGCCTGGGAAGGAGTGGTT-----AGATGTAAACTGTATGTAGTATACAAGTAAATAAACTCAGATGCCAACAAAACAAACAGTTAGGCAGAAAATACTGGCACTGGAATAAACAAAGGCAAGACTTGCCAACATTGGCATTAAGTGGAACCGACTTTTAAGAGATAACTAGGAAAAACTTTATATTGGACCATACC-TTTACCATCCAA-TTTAATTTGAGACAGACCAAGAGAGGCACTGTTA-GAGACTATGGCTGTCTTCCTTGATGTTCAGACATCCTAGTTTCCAGTAACTTATTATGGACCGGCTACCCATGAGTCAGAATAAACCTGTTCATATTTAGGGATTAGTTTCCACAAGTACAAAGTTGAATTTCCTTTTATTTGTCCTAAAATGCTTACTTTCAAACTTGAAGGGACTTCAATTATTCCATGTAGTTTTCGATA--ATTCTTTTATCTTTTCAGACCAGAGTCAAAATATTCGTACAGTATTCATACTGCAGCACCTTCCACCCACCCTTTGGTCGCTTGGACTGCCCTTCTTTGGTTCTTTTTtccactttcagatctttcttgaagtgtagtaagcagaactgtactgggtattccagctgcagtttggtcT s rn2.chr5 19654405 1260 - 191625135 ACTAT-AAAGTTATTTATTAACTATACACAGAATATGTCCCCTATAAAATGTACAAGTAGATCACTAAAAAGTCTTATCCGGTAAACACTTTCTTTAATACAGAATATACTAAGTCCATTGGGATAACAG----CTGTCTGCCTCAAAGTAATCTAATTATAGCACCCAGGGTCTGCTT------TAATGTAAAGTTAAGTACTTGTTATTTTGGGGGTTACCT------ATTTGTTTGACAGAGTCAAGAGTTAACAACTTCATCTTACTCTAGTATATT--AATCACTGCACAACAGATCAGCTTATCACAGGC-------TTTCTTCATTATTTGTAGTAATGGGATACAACAAATGCTAGATACTTTTAAATGGCAGACAACCATAAAATTACTTTCCTTTGATAGTATATTGGGTTT-ATAATTACACTAGGATATGAGTGGTATAAA---TTACC----ATAATACACCC----CAAGATAATAAGGTCATACTGTAATGATTCACTAGATTGTGCTCAGTAGAT-TTTACTAAATAA--------TCTCTTCTCCCCTCCAATTATCCAGT---AtgtcttacccatagtaagggttcagtaagtgtctgttgaaCACACTGTCTACACAGGAGGTGAGAAGAGATGGGCCCTCGTGG-TGGATATCAAGTATAAGTGGAATCAGCCTGGGAAGGAGTGGTT-----AGATGTAAACTGTATGTCGTATATAAGTAAATAAACTCAGATGCCAACTAAACAAACAGTTAAGCAGAAAATACTGGCACTGGAATAAACAAAGGCAAGATTTGCCAACATTGGCATTACGTGGAACTGACTTTTAAGAGATAACTAGGAAAAACTTTATATTGGACCACACC-TTTACCATCCAAATTTAATTTGAGACAGACCAAGAGAGGCACTGTTAAGAGACTATGGCTGTCTTCCTTGATATTCAGACATCCTAGTTTCCAGTAACTTATCATGGATCGGCTACCCATGAGTCAATATAAACCTGTTCATATTTAGGGATTAGTTTCCACAAGTACAAAGTTGAATTTCCTTTTATTTGTCCTAAAATGCTTACTTTCAAACTTGAAGGGACTTCAATTATTCCATGTAGTTTTCGATA--ATTCTTTTATCTTTTCAGACCAGAGTCAAAATATTCGTACAGTATTCATACTGCAGCACCTTCCACCCACCCTTTGGTCGCTTCAACTGCCCTTCTTTGGTTCTTTTTTCCGCTTTCAGATCTTTCTTGAAGTGTAGTAAGCAGAACTGTACTGGGTATTCCAGCTGCAGTTTGGTCT a score=12745.000000 s hg15.chr12_random 237240 49 + 590431 ATCATTGTCGGAATGGCTTCTGCTACGCCGTGGTCTTCCAGTCGGT---CTA s mm3.chr12 107434002 52 + 114462600 ATCATTGTCGGAATGGCTTCGGCTACGCCGTGGTCTTCCAGTCGGTCTACTG s rn2.chr5 19659181 52 - 191625135 ATCATTGTCGGAATGGCTTCGGCTACGCCGTGGTCTTCCAGTCGGTCTACTG a score=40396.000000 s hg15.chr12_random 237289 163 + 590431 TTTCTAGGACTATACGATCTTCTATAGTTGTAATCAAAAGACCGACTTCTTGATCTCCTCCTTTCATAACTTCGGCTTCTAGAACGTCTGTATCTGTCATAATCATCATAGCGTGAAGAACTGTACACATTCCTCCCTTCCTTGGCTTTCATCTGATTTGGTG s mm3.chr12 107434054 163 + 114462600 TTTCTAGGACTGTAAGATCTCCTATAGTTATAATCAAAGGAGCGACTCCTCGATCTTCTCCTTTCATAACTCCGGCTTCGAGAGCGTCTATATCGGTCATAATCGTCATATCGTGAAGAGCTGTATACATTCCTCCCTTCCTTGGCTTTCATTTGATTTGGTG s rn2.chr5 19659562 163 - 191625135 TTTCTAGGACTGTAAGATCTCCTATAGTTATAATCAAAGGACCGACTCCTTGATCTCCTCCTTTCATAACTTCGGCTTCGAGAACGTCTATATCGGTCATAATCGTCGTATCGTGAAGAGCTGTATACATTCCTCCCTTCCTTGGCTTTCATTTGATTTGGTG a score=26290.000000 s hg15.chr12_random 237452 104 + 590431 TCTTTCGATCCCCCTGGGCAAACTGTATTTCAATCTGCCGTCCACAAATCCACTTTCTGTCCAAATTATGTAAAGCGTCTTCAGCATCACGAACATCCTCAAAT s mm3.chr12 107434217 104 + 114462600 TCTTCTGATCCCCCTGTGTGAACTGGATTTCAATCTGACGCCCACAAATCCATTTTCTGTCCAAATTATGTAAAGCATCTTCAGCATCACGAACATCCTCAAAT s rn2.chr5 19661087 104 - 191625135 TCTTCCGATCCCCCTGTGCGAACTGTATTTCAATTTGACGCCCACAAATCCATTTTCTGTCCAAATTATGTAAAGCATCTTCAGCATCACGAACATCCTCAAAT a score=23259.000000 s hg15.chr12_random 237556 107 + 590431 TGAACATAAGCAAATCCTCTTGGACGGCGAGTGTAGAAATCAAGTGGAACATACAC----ATCAACTATAGGACCATAACGACCAAATTCACGCCGCAAGTCTTCAGACCT s mm3.chr12 107434321 109 + 114462600 TGAACATATGCAAATCCTCTTGGACGCCGAGTGTAGAAATCAAGTGGGACATAAATCATAATC--ATATTGGGCCATAACGACCAAATTCCCGACGTAAATCTTCAGATCT s rn2.chr5 19664484 107 - 191625135 TGAACATATGCAAATCCTCTTGGACGTCGAGTGTAGAAATCAAGTGGAACATAAAC----ATCTACTATTGGACCATAACGACCAAATTCCCGACGTAAATCTTCAGACCT a score=6645.000000 s hg15.chr12_random 237663 124 + 590431 GGTGTCGTCGGCCACGTTCCTGACGAACAGAGACGTGTTGGGGGGACGCAGGTAGCGGGACATGGCGGCGGCGTGTCTCGGCCGGGCGCACTAACGGGCTCAG------CGTCGACG----CGGCCGCGTCGAC s mm3.chr12 107434430 129 + 114462600 GGTGTCGTCCACCACGTTCCTGATGAACAGAGACGTGTTAGGGGGGCGCAGGTATCGGGACATGGCGGCAGCGGGACT---CTGGGCG--CTAACCGGCTCGGGCAAACCGTCCACAGCTCCGGCGGCGGCGGC a score=78738.000000 s hg15.chr12_random 237787 839 + 590431 AATAATTGCAAATATATTTATTACAATTTACAGATTAGTTATGTTATATACACAAATATAATTTTAACTATAAAATCCCAACTAGTTACATTT-AAATTATTGATCTGTAGAAGCCAATTTAGAGTCTTCTAGTCCC---------------------CTAACTTTACCTTCCTTAAATTATACAAAAATAAAATCTGATAGTTTTGATTTCAAGTTAAAGATGAAGAAGTGTTACATTTCATCACTCAGAAATGG-AACTTTTACCTGTCTGTACAAAGCCTTTTACATGCTACATTGACACTTAAAGCACCATTAACAAGACTTTAAATGTATAAAATGTTTAATTAAAACCTCCAAAGATTTTCT-----CTTTAAGATTACGGGGGTTTAACTTTGTTCTAACTAGAATTGGGATGA----AACAAGAATTTTGCTTTTTTCTCCTTCAGTCCAACTTTAAAATAGTCCTTTCTGTCCTTCTTATCACCTTCTGATCACTTCTTCCAAGGAGGCTAGTATATGGAAGAACTCTTAATCAAGCTTTCACTCATTTGGTAGTGAGGTTAGAATCCCATGGGGAACAATTTTCCAAAATCCAATGAA--------------AGATGTCTCATTATTTTCAAATACACAGAGGTGCT-AGGTTTAAGAAACAGGAAACACAACGTTAAGTCTCGGAAATAAAA---TGT-----TTCAGCCTGGTTTTAAAAGAA-TGCCTGTATGTTGTCAAAAGGCTTTTTTC--AAGGCAAATGACGCCTGCTTTCCAACCGACATTGCTGTTGCTTGAAACTAGCCTGTTTTCATGTTATTAGACCATCCTGTA-AATGTGCTCCCTATGATTACCTAAAGTGGAGGTGCACAAAACACACAGa s mm3.chr1 62418876 720 - 195869683 AATAATTGCAAATATATTTATTACAATTTACAGATTAGTTAATAATTATATACAAATATAATCTGAGCTATCAAATCTCCAC--GTTACACGTAAAATGACTGAGCTGAAAAGGCCAACTCA-AAAAATGTCATTCC---------------------CCAACTC----TTTCttaaattata-aaaaataaaatttGACGGTTTTGATTTCAAGTT--AGATAAAGGGTTGCCACATTTCAGCCCTCAGAAGTGT-GGCC----CCCACCTGTACAGAGCC--TCACATGCTACACAGA--TCTAAAGCACCACT-GCAAGAC-TTGAATGT-----GTATTCAACTAGAACCACC-AtgcctgcctgcctgcctgcctgcctTGGAGGTGT---TCTTTCCT---GGGGGCTGGGATGACAATGACA--------G--TTTTTCTCCTTCAGTC----------AAAGATCCTTCTGTT---CTTGCCACCATCAGGACATGTCTGC-----AGGCATG---------------------AGTCATTTACTCATTTGATAGTGAAGGTGTAATCT-----GGAACAATTTT----------------------------------------------TAAATATAC--AGGTGCT-GGGTCTCAGAAACAAA------AAC-CTAATCATCTGAAATCAAGTGTTGTTAAGCTGCAGTCCGG-TTTAAAAGAAATGTCTACACACTGTCACAGCTTTTCTTCCTAAAGTCAAC--TTGCCTGCTTTCCA---AACATAGCT-----TCTAAACTAGCCCATTCCCACGGCACTAAACCAGACTCTTTAATGCA--CTCTGGAGTTCACTAAAG-GCAGGTGCATAAAATACACAGA s rn2.chr13 61299431 802 - 105800825 AATAATTGCAAATATATTTATTACAATTTACAGATTAGTTAATAATTATATACAAATATAATCTCCGCTATAAAATCTACACTAGTTACATGTAAAATGAT----CTGAAA---CCAACTC--AAACATCTCATTCCAAAAAAAAAAAATTTCTCATTCCGTCTCTACTTTTCttaaattata-aaaaataaaatCTGACGGTTTTGATTTCAAGTT--AGAT-AAGGGTTGCCACATTTCAGCACTCGGAAGTGTGGGTC----CCCACCTGTACAGAGCC--TCACATGCTACAGAGATCTCTAAAGCACCACT-GCAAGAC--TGAGTGT---AAGTGTTCAGCTAGAACCGCC-ATGCCTGCCT-----------TGCCTCGGAGGTGT---TCTTTCCT---TGGGATT-CGATGACAATGACAGTAATTTTG--TTTTTCTCCTTCAGTT-----------TAGACCCTTCTGTC---TTTGCCACCATTTGACCATCTCTGC-----AGGCGTGATTA---------TTTTAACCAGTCATTTATTCATTTGATAGTGAGGGTATAATCT-----GGAACAATTTTCAAACATCTCAAACACACTGTCAATGTATAGATATCCCGTCCCTTGCAAATATAC--AGGTGCTAGGGTCTCAGAAAGAAAA---ACAAC-CTAATCATCTGAAATCAAG---TGTTAAGCTGCAGTCTGGTTTTAAAAGAAGTGTCTACACATTGTTACAGTTTTTCTTCCTAAAGTCAAC--ACGCCTGCTTTCCAAACAACACAGCT-----TTTAAACTAGCCCATTTCCACAGCACTAAACCAGATTCTGCAACGCCCTCTCTGGAGTTCACAAAAG-GCAGGTGCACAAAATCCACAGA a score=34047.000000 s hg15.chr12_random 238811 206 + 590431 GCTTTGCTGAATGTTTCTGGGGTACCAATACGAGTTCCCATAGGGGCTGCTCCCTC----AAAAAGGGAGGGGACAGAT-GGGGAGCTTTTCTTACCTA-TTCAAGGAATACGTGCCTTTTTCTTAAATGCTTTCATTTATTGAAAAAAAAAAAAAATGCC-----CCCAAAGCACTATGCTGGTCATGAACTGCTTCAAAATGTGGAGGTAATAAA s mm3.chr15 40464670 212 + 104111694 GCTTTGCTGAATGCTTCTATGGTG-CAGTACAGGTCTACAAAGGGGCTGCTCTCTCTCCAAGGAGCGGAAGAGGCAGGT-GGGGAACTTTTC-TGCCTA-TTAAACAAAAATGGGCCTTTTAAAGAAATGCTCTCCTTTATTGCAAACCAAGACCAAGACAAAAAACCCAAAGTACAATGCTGGTCATGAACTGCTTCAAAATGTGG-GCTAATAAA s rn2.chr15 36710696 214 + 99209255 GCTTTGCTGAATGCTTCTAGGGTG-CAGTACAGGACTGCAAAGGGGATGCTCTCTCTCCAAAGAGGGGAAGAGGAAGGTGGGGGAACTTTCC-TGCCTATTTAACCAAAAACGTGCCTTTTAAAGAGATGCTTTCATTCATTGTAAACCAAAAACAAGACCAAAAACCCAAAGCACAATGCTGGTCATGAACTGCTTCAAAATGTGG-GCTAATAAA a score=1116.000000 s hg15.chr12_random 239017 28 + 590431 ATG-CAACTGTGTAAAAAAAAAAAAAAAA s mm3.chr13 36018232 29 + 116242670 ATACCAAATGTGaagaaagaaagaaagaa a score=32221.000000 s hg15.chr12_random 239062 153 + 590431 GACGAAGCCATGAGACGGCTGCAGGAGCGGATGGGGCGGCTTCGGAGTGGCCGAGGGCTGGATGGGGCCGTGGACATGGGGGCCCGGGGGGCTGCCGCATGTGACCTGGTCCAGCGCTTTGTGCGTGAGGCCCAGAGCCAGGGTGCACAGGTG s mm3.chr7 100625160 153 - 134401573 GATGAAGCTATGAGGCGACTCCAGGCCAGAATGGCACAGATACGGAGTGGGAGAGGACTGGATGGGGCTGTGGACATGGGGGCTCGAGGAGCTGCTGCCCGAGACCTGGCCCAGAGCTTTGTGGATGAGGCCCAAAGCCAAGGGGGACAGGTG s rn2.chr1 189126476 153 - 276301343 GATGAAGCTATGAAGCGACTCCAGGCCAGGATGGCACAGATACGGAGCGGGAAAGGACTGGATGGGGCTGTGGACATGGGGGCTCGAGGAGCTGCTGCCCGAGACCTTGCCCAGAGCTTTGTGGATGAGGCCCAAAGCCAGGGTGGACAGGTG a score=18196.000000 s hg15.chr12_random 239215 91 + 590431 TTCCAGGCTGGTGATGTGCCTTCGGAACGCCCATTCTATCCCCCAACCTTGGTCTCCAACCTGCCCCCAGCCTCCCCATGTGCCCAGGTGG s mm3.chr7 100625646 91 - 134401573 TTCCAAGCTGGTGATGTGCCCTCCAGTAGCCCATTCTTCTCTCCAGCCTTGGTTTCTGGTCTGCCTCCAGCAGCCCCATGTGCCCAGGCCG s rn2.chr1 189126932 91 - 276301343 TTCCAAGCTGGTGATATGCCCTCCAACAGCCCCTTCTTCTCTCCAACCTTGGTCTCTGGTCTTCCTCCAGCAGCCCCATGTGCCCAGGCTG a score=76947.000000 s hg15.chr12_random 239306 382 + 590431 AGGTGCCGTGGCCTGTGGTCGTGGCCTCCCCCTTCCGCACAGCCAAGGAGGCACTGTTGGTGGCCAACGGGACGCCCCGCGGGGGCAGCGCCAGTGTGTGGAGCGAGAGGCTGGGGCAGGCGCTGGAGCTGGGCTATG------------------------------------------------------------------------------------------------------------------GGCTCCAGGTGGGCACTGTCTGGATCAACGCCCACGGCCTCAGAGACCCTTCGGTGCCCACAGGCGGCTGCAAGGAGAGTGGGTGTTCCTGGCACGGGGGCCCAGACGGG---------------------------------------------------------------------------------------------------------------------CTGTATGAGTATCTGCGGCCCTCAGGGACCCCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGACACCTTTGGCCTCGCTGTGCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGCCCAGC s mm3.chr7 100626021 572 - 134401573 AGGTACCGTGGCCTGTGGTTATGGCTTCTCCTTTCCGCACAGTCAAGGAGGCACTAGCCCTGGCCAATGGAACACCCCGGGGAGGCAGCGCCAGCGTGTGGAGTGAAAGGCTAGGGCAAGCCCTGGAGCTGGGCTATGGGTCAGTTGGTACTTACTCCCCCTGCCTCTGCCCCGTCTCCC--TCAGGTGTCTCCCTCCCACTTCACCCAGCATCCCATCTCCCCCTCCCCTGGTGTCTTTCCCTGCCTCATAGGCTCCAGGTGGGCACAGTGTGGATCAATGCTCATGGCCTCCGAGACCCTGCGGTGCCGACAGGGGGCTGCAAGGAGAGTGGGTCTTCCTGGCACGGAGGCCCAGATGTGAGTGCCCATCCACCTCTGTACCTCTGAG--------------------------TCACCT-------------TGAGACCATCTGGCCTCCTGCTGACCACGCACCTCTCACAGGGCCTGTATGAGTACCTGCAGCCCTTGGGGACACCTTCCCAGGAGTCCTTCCTTTGTGAGAATATCAACTACGACACATTTGGCCTTGCTGCGTCCTCCATTCTGCCGTCAGGGCCAGAAACAGGGCCTAGGTGAGC s rn2.chr1 189127212 607 - 276301343 AGGTGCCGTGGCCTGTGGTTATGGCTTCACCTTTCCGCACAGTCAAGGAGGCACTGGCCCTGGCCAATGGAACACCCCGGGGAGGCAGCGCCAGTGTGTGGAGTGAGAGGCTAGGGCAGGCCCTGGAGCTGGGCTATGGGTTAGTTGGTACTTACTCACC-TGCCTATGCCCTGTCTCCCACTCAGGTGTCTCCCTCCCCCTT-ACCCAGCTTTCCATC---CCCTCCCCTGGTGTCTTTTCCTGCCTCCTAGGCTCCAGGTAGGCACAGTATGGATCAATGCTCATGGCCTCCGAGACCCTGCGGTGCCTACAGGTGGCTGCAAGGAGAGTGGGTCTTCCTGGCATGGAGGGCCAGATGTGAGTGCCCATC-GCCTCTTTGTCTCTTGACACCTCATACCCTCACCTAATACCTCTCACCTAGTACCCCTCACCTAGTACTACCTGGCCTCCTGGTGACCACACACCTTTCACAGGGCCTATATGAGTACCTACAGCTCCTGGGAACACCTTACCGGGAGTCCTTCCTTTGTGAGAGTCTCAACTATGACACATTTGGCCTTGCTGTGTCCTCCAGCCTGCCGTCTGGGCCAGAAACAGGGCCAAGGTGAGC a score=77001.000000 s hg15.chr12_random 239688 366 + 590431 ACCCCCCTATGGGCTCTTCGTTGGGGGCCGTTTCCAGGCTCCTGGGGCCCGAAGCTCCAGGCCCATCCGGGATTCGTCTGGCAATCTCCATGGCTACGTGGCTGAGGGTGGAGCCAAGGACATCCGAGGTGCTGTGGAGGCCGCTCACCAGGCTTTCCCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGGCGGGCCAGTCCCCAGGAGCCCGGGCAGCCCTGCTGTGGGCCCTGGCGGCTGCACTGGAGCGCCGGAAGTCTACCCTGGCCTCGAGGCTGGAGAGGCAGGGAGCGGAGCTCAAGGCTGCGGAGGCGGAGGTGGAGCTGAGCGCAAGACGACTTCGGGCGTGGGGGGCCCGGGTGCAGGCCCAAGGCCACACCCTGCAGGT s mm3.chr7 100627034 518 - 134401573 CCCTCCCTATGGGCTGTTTGTCGGAGGCCGTTTCCAGTCTCCTGGGACCCAGAGCTCCAGGCCCATCCAAGATTCTTCAGGCAAAGTCTCCAGCTATGTAGCTGAGGGTGGAGCCAAGGATATCCGAGGTGCTGTAGAGGCTGCTCATCAGGCTGCCCCTGGGTAAGCG--TCAAATGGAAGCCCAGAGGTGAGGGTGGCTCGGATAGAAGTACACTTGGGACTGGAGCCCTGGGTGGAGGCTGTGGATGATAGAGATGGCCATCTGGGACTAGCTAAGGCCAGGCTATACCC-TAACTTGCATTGTTTGCCCACAGCTGGGGAGCCCAGTCCCCAAGAGCCCGAGCAGGCCTGCTGTGGGCCCTGGCGGCTGCTCTGGAGCGCAGGAAGCCAGTGCTGACCTCACAACTAGAAAGGCACGGAGCAGCGCCTACAGTTGCCAAGATTGAAGTAGAACTGAGTGTGAGGCGACTCCAGACATGGGGCACCCGGGTTCAGGACCAAGGCCAGACACTACAGGT s rn2.chr1 189128245 518 - 276301343 ACCTCCCTATGGGCTGTTTGTCAGGGGCCGTTTCCAGTCTCCTGGGACCCAGAGCTCCAGGCCCATCAAAGATTCTTCGGGCAAAGTCTCCAGCTATGTAGCTGAGGGTGGAGCCAAGGATATCCGAGGTGCTGTGGAGGCCGCTCATCAGGCTGCCCCTGGGTAAGAGGGTCAAATGGAAGCCCAGAGGTAAGGGTATCTAGGGTGGGAGTAAGCTTGGGACTGGAGCCCTAGGTTGAGTCTGTGGAT---AGAGGTGGCCATCTGGGAATAGCTAAGGTCAGGCTGTACCCCTAACTTGCGTTGTTTGCCTACAGCTGGGGAGCCCAGTCTCCAAGGGCCCGAGCAAGCCTGCTGTGGGCCCTGGCGGCTGCTCTGGAGCGGAGGAAGCAAGTCCTGGCCGCACAGCTAGAGAGGCACGGAGCGGCGCCTACGGTTGCGGAGACTGAAGTGGAGCTGAGTGTGAGGCGACTCCAGACATGGGCCACCCGGGTTCAGGACCAAGGCCAGACACTACAGGT a score=66820.000000 s hg15.chr12_random 240054 308 + 590431 AGCCGGGCTGAGAGGCCCTGTGCTGCGCCTGCGGGAGCCGCTGGGTGTGCTGGCTGTGGTGTGTCCGGACGAGTGGCCCCTGCTTGCCTTCGTGTCCCTGCTGGCTCCCGCCCTGGCCTACGGCAACACTGTGGTCATGGTGCCCAGTGCGGCCTGTCCTCTGCTGGCCCTGGAGGTCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACATGGCCACCGTGTTCCCAGCAGGCCTGGCCAACGTGGTGACAGGAGACCGGGACCATCTGACCCGCTGCCTGGCCTTGCACCAAGACGTCCAGGCCATGTGGTATTTCGGATCAGCCCAGG s mm3.chr7 100628766 518 - 134401573 AACAGGATTGAGAGGCCCTGTGCTCCGGCTTCGAGAACCATTGGGAGTGCTGGCCGTGGTGTGCCCGGATGAGTGGCCCCTGCTGGCTTTTGTGTCACTACTGGCCCCTGCACTGGCCCATGGCAATGCCGTGGTCTTAGTACCCAGTGGGGCATGTCCTCTGCTGGCCTTGGAGGTCTGCCAGGTAAAATTACCTGTTTCCCCTCCTGCCTGCTGCTCCTGGGTCTTCAGGAGCTCAGCTGGCCTCCTCCCTCCTGGGTAGCTATGATAAC--GAGTCTCAGCATCCCCTCTAAGTCCTATTCCTTGCATGAGCCCCTACAGCCACTGCC---AGATGCCCACTCTCCAGCCTGCCCCATTGATGTTCAACCCTGGGTGTTCCACTCTCTCATCCTAGGATATAGCTCCTCTGTTTCCTGCTGGCCTGGTGAGTGTAGTGACAGGGGATCGCGACCACCTGACCCGCTGTCTGGCCTTACATCAGGATGTCCAAGCCCTGTGGTACTTCGGCTCGGCCCAGG s rn2.chr1 189129751 520 - 276301343 AACAGGATTGAGAGGCCCTGTGCTCCGGCTTCGAGAGCCACTAGGAGTGCTGGCTGTGGTGTGCCCAGATGAGTGGCCGATGCTGGCTTTTGTGTCACTACTAGCCCCTGCACTGGCCCATGGCAACGCTGTGGTCTTAGTACCTAGTGGATCATGTCCTCTGCTGGCCTTGGAAGCCTGTCAGGTAAAATCACCTGCTTCCCCTCCTGCCTGCTGCTCCTGGGTCTTCCAGAGCTCAGCTGGCCTCCTCCCTCCTGGGTAACCATGGTAACTTGAATTTCAGCATCCCATCTAAGTCCTATTCCTTGTATGAGCCCCTACAGCTACTGCCCCACGAGGGCCACTCTTCAA---GGGCCACTGATGTTCAACCCTGGGTGTCCCACTCTCTCATCCTAGGATATAGCTGCTCTGTTTCCTGCTGGCCTGGTGAACGTAGTGACAGGAGATCGGGACCATCTGACCCGCTGTCTGGCCTTACATCAGGATGTCCAGGCCATGTGGTACTTTGGTTCAGCCCAGG a score=46868.000000 s hg15.chr12_random 240362 317 + 590431 GTTCCCAGTTTGTCGAGTGGGCCTCGGCAGGAAACCTCAAACCGGTGTGGGCGAGCAGGGGCTGCCCGCGGGCCTGGGACCAGGAGGCCGAGGGGGCAGGCCCAGAGCTGGGGCTGCGAGTGGCGCGGACCAAGGCCCTGTGGCTGCCTATGGGGGACTGATGCCTGAGCGCCACCTACTGCATTTTGGACAC-CTCACACCAAGGGGAGATGCACCCCACAGACACCTGGGACTTTCCCCTTCTGGTTCCTGTGTCTCCCAATAAACTCTCTGACCAACCCTAGCTGTG----CTTCTGCGAGAAGAAAGGGTGTAGCAAC s mm3.chr7 100629961 286 - 134401573 GCTCCCAGTTTGTGGAATGGGCCTCTGCAGGAAACCTCAAGTCTGTGTGGGTAAACAGGGGCTTCCCAAGGGCCTGGGATGTGGAGGTCCAGGGGGCAGGACAGGAGCTGAGTCTTCACGCAGCACGAACAAAGGCCCTGTGGCTGCCAATGGGGGACTGATGCCGAA--GCCACCCACTCCATCTTTGATGCTC-------------AGGAGCAC----CAAGTGCTTGGAACGTTTCTCTCAGATTTCCCATGGCTTCTAATAAA----CTGAGTGACTTTAACTGTG----CATTTG---------AGGATGTGGGAAC s rn2.chr1 189130883 289 - 276301343 GCTCCCAGTTTGTGGAATGGGCCTCTGCAGGAAACCTCAAGCCCGTGTGGGTAAACAGGGACTTCCCAAGGGCCTGGGATGTGGAAGTCCAAGGGTCAGAACAGGAGCTGAGTCTTCATGCAGCACGAACCAAGGCCCTGTGGCTGCCAATGGGGGACTGAGGTCGAA--GCCACCCACTCCATCTTTCATGC-C-------------AGGGACAC----CAAGTGCTTGGAACGTTTCTCTCAGATTTCCCATGACTTCAAATAAA----CTGAGTGACATTGACTTTGACTACATTTG---------AGGGTGTGGGAAC a score=7374.000000 s hg15.chr12_random 240869 85 + 590431 CGAGGCCATTTTAGTTCTGAGGTTGAGCAGCTCAGGAGCCGGCTCCAGCACGGTGCTGTGTTTGTGAAACAGAGAAAGGGGACCC s mm3.chr7 100630247 75 - 134401573 AGTGGCTTCTTCA----------TGTGTGGCCCAGTAGGCAACCCTGGGAGAATACTGTGTTTATGGGATGCATAAAGGGAACTC s rn2.chr1 189131172 70 - 276301343 AGTGGCTTCT-------------TGTGTGGCCCGGTAGGCAGCCCTGGGAGAGCAC--TGTTTATGTAATGCATAAAGGGAACTC a score=103258.000000 s hg15.chr12_random 241365 893 + 590431 CTTCTTTTCATTCTCTAATACATGCAGTCAAACTGCCTATGAAGCAAATACCAATTCATCTTACGCTTTAACAG--ATAAGGTAAAGCACTTGGGAAATCAACATTATTCTTAAG--TCTGAAAGTGATTCTACCTCTTTACCTTATTATATTTTCTCCCATGAAATTTTAAACTTTTAATGGAGTTATATTT-AATATGAGAATAAATTAAAATTTGAACTTAATGTCTTTTCAGATTCATCCAGCAGTTTAGAATGTTTATATTTGTTTT--ATGTCTTGAGGGAA---ACAAAAACGTAATTTCTAATTTAGAATATTCTGGCTATCTTTATTAAAAGTTACATTTATAATTTTATAGCAAAGTAATATCATCTGTTTGTCCAAACATTACAGA--TTTTAAAAAATTCCCCTAATGTATGTAAAT--ACAAAGC---TTATTCCCAGTACACATTTTATAGAGGTGTGTTTTCATTTTTTGAAGCAGGGTTCAATGGACATTTTTAGGGTCTTGCTAACATCAGCCCTATATACTCAGAGACGATTGAATCTAGTAAATGGACAATGAAAACTGGTTGAGGCTGCTGATGAATGCTTCAATAAAAATCTGATACACA-CAGATTTCATTGTCATATTCAACAAAACCAAGTCTTCCTTAAAACTGTGATCCTGATAGGCTGAAGATAGAGTAATGGACTGTTAGTTCCTCATGCCAAAAATACATGGGTCTGTCATACAAAGGCTTCATTCTCTGCCTGTCGTCAGTAACTTGAGAGCCTTTTGTAGATTCTGGACAGCAGTGCTTACATCTTCATACTGCAAAGCACTGCCAGCATATTTGCAGTACTTCTGAGCTCTAGCAAAGTCTTCTGGGGTTAGACGAACATCCCCCTGGGAAATTGTATT s mm3.chr10 14377744 809 + 130738012 CCTTTCTTCACTTTTTCATACATACA--TTAGCTGCTGATGAAG--GAGAGCAATACACTGTAA---TTGCCAGTGGGCAGGAGGAGT-CCCAGGAAACCAGTGTGATTTTCCAG--T---ACAATGATTCTATCACTCCACATGGTG---TTTCCTTCTGTG--ATCTTTGATTTTTAC---AGTTATATTAAAACAGGAATATAAA-------GTGCATTTAATCTCTCTTA----TCATTTACCACTTTTGGATGTTCACATTTGCCTTGCAAATCCTAAGGGAAG--AAAAAGTCAGGATCTCCAACCCGGACTATTCTGGTAATCTTTATTAAAAGTTTAATTTAGAATATTAAAGCAACATAATATGGTTTGTTTGTCCAAATATTACAGATCTTTCAAAAACTTCCTTTAGTGTGTATAAATTAAGAAAGCATATTATACCCAACATG-ATTTTCTACAGGG--------ACATTTCACAGCGGG-TTCGA------------------TGCTAGCATCAGCTCTACACACT---------------------------CAATGACAACTGGCTGAGGCAGCTGGTAAATGCT----------TCTGAACCACA-CAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAA-GGCTGAGGAAAGTGTAACGGACTGTTAGTTCTCTATGCGGAAAACAC-TGGCTTCCGTGAACAGAGGCTTCACTCCCTGCCTGTGGTCAGCAGCCTGAGGGCCTTCTGGAGGTTCTGCACAGCGGTGCCCACATCTTCATACTGCAGGGCACTGCCAGCATACTTGCAGTACTTCTGAGCTCTAGCGAAGTCCTCCGGGGTCAGGCGGATATCCCCTAAGAGAAGCACATT s rn2.chr1 9836278 792 + 276301343 CTTTTCTTCACTTTCTAATACATAAA--CCAACTGCTGATGAAG--GATAGCGATTCACTGCGC---CTGCCGG--GGCAGGAGGAGT-TCCGGGAAGCCAGTGTGATTTTTCAGAGT---GCAGTGATTCTCCCTCTCCACCTGGTT---TCTCCTCCCATG--ACCTTTGATTTTTAC---AGTTATATCTGAACATGGATATAAC-------CTGCACTTAATCTCT--TA----TTATTTACCATTTTTGGATGTTCACATTTGTCTTGCAAATCCCAAGGGGGGGGAAAAAGCCAGCATCTCCAACCTAGAACATTCTGGTAATCTTTATTAAAAGTTTAATTTAGAATATTAAAGCAACATAATATGGTTTGT----CCAAATATTACCGACTTTTCAAAAACGTCCTTTAGTGTGTATACATTAAGAAAGCATACTATACCCACCAGG-ATTTTCTACAGGG--------ACATTCCATAGCGGGGTTTGA------------------TGCTAACATCAGCTCTACACGCT---------------------------CAATGACAACTGGCTGAGGCAGCTG------------------------ACGACAACAGGAGCCACTGTCTTACTCGGGGAACTGAGGTCTTCTGTAAAACCATGCTCCTGAAAGGCTGAGGAAAGTGTA-CTGAATGTTAGTTCTCTATGCAGAAAACGCATGGGGTCCGTGAGCAGAG-CTTCATTCCCTGCCCGTTGTCAGCAGCCTGAGGGCCTTCTGCAGGTTCTGCACCGCGGTGCTCACGTCTTCATACTGCAGGGCACTGCCAGCGTACTTGCAGTACTTCTGAGCCCGAGCAAAGTCCTCTGGGGTCAGGCGGACATCCCCTAGAAGAAGCACAT- a score=7157.000000 s hg15.chr12_random 242258 44 + 590431 GAAAAGTGCGGGATCAATGGCA---------GGTATAGTCTGTGGAGTAGGTT s mm3.chr10 14383778 51 + 130738012 --ACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTGTGGACTAGGCT s rn2.chr1 9840944 51 + 276301343 --ACAGGTCAGGATCAATGGCGGGAATGGCTGGGACAGTCTGTGGACTAGGCT a score=43836.000000 s hg15.chr12_random 242305 201 + 590431 TAGTATTACTTGCT-ACACCTGTGCTGTGAGGCACTTCTGCTGGTGTATTAGCTGGAGCGTGTGCACCCGGAGGAATCTGTATTCCAGTATAGTTGCCTGATGGCATGTTGCTTGGGTCATAAGTTGAAGATGATGATGGCTGAGTTGGCTGAGTGGGCAGAGAGGCTGCTCCAGCATCTTCATTTTCTTCAATATCATTAT s mm3.chr10 14390959 202 + 130738012 CAGAGTTCTGTGCTCATACCTGTGCTGTGTGGCACTTCTGCAGGGGTATTAGCTGGAGCATGTGCACCTGGAGGAATCTGTATGCCACTGTAGCTGCCTGGTGCCAAGTTGCTTGGGTCGTATGCTGAAGATGATGATGGCTGAGGTGGCTGAGTGGGCAGAGAGGTTGCGCCAACATCTTCATTTTCTTCAACATCTGTAT s rn2.chr1 9845806 202 + 276301343 CAGACTACTGTGTTCATACCTGTGCTGTGCGGCACTTCTGCAGGGGTATTGGCTGGAGCATGTGCACCCGGAGGGATCTGTATCCCACTGTAGCTGCCTGCTGCCAAGTTGCTTGGGTCGTACGTTGAGGATGATGATGGCTGAGGTGGCTGAGTGGGCAGAGAGGTTGCACCAACATCTTCATTTTCCTCAACATCTGTGT a score=26485.000000 s hg15.chr12_random 242506 105 + 590431 CTTCTTCAATTCCAACAGGGCCTGCTTGAGGAGTCTCCCCATTCTTTAAACAATTATGGATGTATGTTGCCTTCCATCTGGCATACTTCCTGTGTTTCACATTTT s mm3.chr10 14398987 105 + 130738012 CTTCCTCTATTCCAACAGGGCCTGCTTGAGGAGTCTCCCCATTCTTTAAGCAGTTATGAATATATGTTGCCTTCCACCTTGCATACTTTCTATGTTTCACATTCT s rn2.chr1 9852954 105 + 276301343 CTTCCTCTATTCCAACAGGGCCTGCTTGAGGAGTCTCCCCATTCTTTAAGCAGTTATGAATATATGTTGCCTTCCACCTTGCGTACTTTCTATGTTTCACATTCT a score=17913.000000 s hg15.chr12_random 242611 74 + 590431 CATCAGTGAGTTCTCCAAATACTGTTATGACATCTATCAAAAGACTTGCAGTATAGAAGGACTTGATCATGTTT s mm3.chr10 14407108 74 + 130738012 CATCTGTGAGTTCACCAAACACTGTGATGACATCTATTAAAAGGCTGGCAGTGTAGAAGGACTTGATCATGTTT s rn2.chr1 9862384 74 + 276301343 CATCTGTGAGCTCGCCAAACACTGTGATGACATCTATTAAAAGGCTGGCAGTGTAGAAGGACTTGATCATGTTT a score=31398.000000 s hg15.chr12_random 242685 128 + 590431 TTGTGAAATCGTCCAGCACGATCTTCATTGTCTGCATACAAAAACATTTTCAAAGCATAATTCTCCAAATGGGCACAGCCCACTATTTCTTGAGTAATAGCTTCATTATCACCCAACTGCTTCTTTAG s mm3.chr10 14407923 128 + 130738012 TTGTGAAATCGTCCAGCTCGATCTTCATTGTCTGCATACAAGAACATTTTCAAAGCATAATTTTCCAAATGGGCACAACCAACTATTTCTTGAGTAACAGCTTCATTATCCCCCAACTGTTTTTTAAG s rn2.chr1 9863137 128 + 276301343 TTGTGAAATCGTCCAGCTCGGTCTTCGTTGTCCGCGTACAGGAACATTTTCAAAGCATAATTTTCCAAATGGGCACAACCAACGATTTCTTGAGTAACAGCTTCATTATCCCCCAACTGTTTCTTAAG a score=9836.000000 s hg15.chr12_random 242813 36 + 590431 AGCTTCTAACTGATCCATTAACTTTGATAAAAATTT s mm3.chr10 14410656 36 + 130738012 AGCTTCTAACTGATCCATTAGCTTTGATAAAAATTT s rn2.chr1 9866082 36 + 276301343 AGCTTCTAACTGATCCATTAGCTTTGATAAAAATTT a score=2853.000000 s hg15.chr12_random 242974 43 + 590431 CTTTTAATGGTGTtctttctttgtccttctctttctcttcctc--- s mm3.chr15 18859239 46 + 104111694 CTTTTAATCCTGTGCATCTTTAGTCATCATCATGGATATGTTCATT s rn2.chr2 66592413 43 + 246339213 CTTTCACTCCTGTGCATCTTTAGTCATCCTCATGGCTATGCAT--- a score=92041.000000 s hg15.chr12_random 243017 777 + 590431 tctctctccctctctTCCCTAAAGCTCCATTCCGACTTAGACAAGGGAAAGGGCACTGCGAAATACACCCTCTCAGGAGATGGCGCTGGCACCGTTTTTACCATTGATGAAACCACAGGGGACATTCATGCAATAAGGAGCCTAGATAGAGAAGAAAAACCTTTCTACACTCTTCGTGCTCAGGCTGTGGACATAGAAACCAGAAAGCCCCTGGAGCCTGAATCAGAATTCATCATCAAAGTGCAGGATATTAATGATAATGAGCCAAAGTTTTGGGATGGACCTTATGTTGCTACTGTCCCAGAAATGTCTCCTGTGGGGTGAGTAGGCAAATCAAAATTCTGTGAGATACAATGAGAC-CTCTTCAACATTGACTTTTTGCAGGTTGATGTAAACATCTTATCTATCATCTAAAAGAATTATTTTTCAATTCTAGAAAATACAGTTCTTTTCATTTATTTTTGGAACTTTTTTGGTTTTCT-------TTCTG--------------CTTCATTATGAAGATAACTACAGGAATATATAACATTAGTT--CCTGTTTTCCACCCTGGTGATTTACCTGAATTCATAGAATCCCTTGCGTGCTTTAAGCAAAAAAATGTATTGCGTTATCGAAATTGATTCAGCATCTCAATTCCAGACACCTATACAGTGCTGGAGACACC----TATCCTACACCACGAAATGCCAGACAGTAATTCCTAGATCAAAGTAAATGATCTAAAGCATGCATCACATCTGATCTGGAAGTGGTCCAGAAAC--AGGTGTGTTGCA-TCTTCTGTA-----GCT s mm3.chr15 21279761 681 + 104111694 TCTCTCTGT--TTCTC------AGCTGCATTCGGACTTGGATAAAGGAGAGGGCACTGTTAAATACACGCTCTCCGGAGATGGTGCTGGCACTGTTTTTACAATTGATGAAACTACAGGAGACATTCATGCAATAAGAAGCCTGGATAGAGAAGAAAAACCTTTCTACACTCTTCGTGCTCAGGCAGTGGACATAGAAACCAGGAAGCCACTGGAGCCTGAATCAGAGTTCATCATTAAAGTGCAGGATATTAATGACAATGAACCAAAGTTTTTGGATGGACCTTATGTTGCTAGTGTTCCAGAAATGTCTCCTGT-GGGTGAGTACACAAATCAAATTTCTATCAGATGCTATTAACCAACAGACTGCATTTTCTTGGTACATTTTGGTGTAGATATCTTATTTATAAGATATCAA---TATTGTTCATTTATAAAA----------TGTTAATATGCTCTAGAAACTGTT----TCCTCT-------TTCTA-----------------------GAATACAGACATTAGAATATGTGCCTTT--TT--ATTATTTCCTAATTTATTGATTTACTTGAAATAAC-------------------------------------------CATATATTATTCAAT----------------------CAATGATGGAGATAACTATATACCAAATACCGCTGAAAACTATATAGTAATTCTTAGCTCAAATTAAAGTAT-TAAGTAATGCATTACAGTAGGATCAGCAATGGGCCAAAAAAAGAGGTAT-TTTCATTTTTCTGTG-----GTT s rn2.chr2 69243990 706 + 246339213 TCTCTCTCTCTTTCTC------AGTTACACTCTGACCTGGACAAGGGAGAAGGCACTGTTAAATACACGCTCTCTGGAGATGGTGCTGGCACTGTTTTCACGATTGATGAAACTACAGGAGACATTCATGCAATAAGAAGCCTGGATAGAGAAGAAAAACCTTTCTACACTCTTCGTGCTCAGGCAGTGGACATAGAAACCAGGAAGCCACTGGAGCCCGAATCAGAGTTCATCATTAAAGTGCAGGATATTAACGATAATGAGCCAAAGTTTTTGGATGGACCATATGTTGCTAGTGTTCCAGAAATGTCTCCTGT-GGGTGAGTAGACAAATCAAGTTTATATTAGATGCTATTAACC-ACCTTCAATATTTTCCTGGTACATGCTGATGTCGATATCTTATTTATAAGATATCAA---TATTGTTCATTTATAAAA----------CATTAATTTGTTCTAGAAACTGTC----TCCTATACCAATATTCTATGAATAAAGCAGCAGTAATCTATGAATACAGACATATGAATATGTAACTTT--TTAAACTATTTCCTAATTTATTGATTTATTTGAACTCTCTCTCTCTCT------CTCTAtgtgtgtgtgtg---tgtgtgtgtgtgtgtgtTTCAAT----------------------CAATGATACAGATAAC----TACCAAATA-----------------------------TCAAACTAAA-------------ACTTTACATTAGTATCAGCAATGGACCAAAGAGA-AGGTAT-TTGCA-TTTTCTGTGTTTTCTTT a score=3706.000000 s hg15.chr12_random 244111 46 + 590431 AGTCACCACTGCTAATCCTTCAATTTATTTCAAAGTAACTTCTGTC s mm3.chr18 37017586 46 + 91041441 AGTTACTTCTGTCTGTCCCTCTGTGTGCTTTAAAGTTACTTCTGTC s rn2.chr18 27830527 29 - 82509072 AGTTACTTCTGTCTGTCCTTCTGTGTGCT----------------- a score=20170.000000 s hg15.chr12_random 244378 158 + 590431 TAATTACTAGTTACAACCAGAGATGCTCCACAAGGATATGCTCCCCACTGTTTTCTTTCTACAATTTCCA--AAGGTTGCAA--GATGTTTTTT--------------TGTGGATGAATATAAAATTTTATTGTGTAATTACTTGGTTCCATTAAAATTGGTTAACTTGCTAAAAA s mm3.chrX 10345322 175 + 149996094 TAGTTACT-GTTACAGCTGCAGAAGCTCTGCAGAGGAATAGGCTCAACTGTTTGCTTTCTATAAGGCACAATAAGGTTGCAAAGAATGTATGTCCATGCGTGCACATGTGGGTATGTAGATAAGATTTTACTGTGTCATCATTTGGTTCTGATAAAATTGGTTAGCTTGAAAATAA s rn2.chrX 22904268 173 + 133900917 TAGTTATC-GTTGCAGCTGCAGAAGCTCTGCAGAAGGATATGCTCAGCT-TTTGCCTTCTGTAAGGC-CAGTAAGGTCGCCAAGAATGTATGTTCATGCTCGCACACATGGGTATGTATATAAGACTTCACCATGTGATCATTTGGGCCTGTTAAAATTGGTTAGCTTGAAAATAA a score=2508.000000 s hg15.chr12_random 244553 15 + 590431 GACtttttttttttt s mm3.chr12 47899596 15 - 114462600 GGTTTTTTGTTTTTT s rn2.chr6 56853061 15 - 146362310 TTCTTTTTTTTTTTT a score=178754.000000 s hg15.chr12_random 244573 890 + 590431 tttGGCAGAATTATT----CTTTATTTCTGGAGACATTTAATCAGATGCAGTAACACTGATTCCAGGCGAGGGCAGGGGGCATGGGTACCCCTGAAGCAACCAGTATCCTGTGGCCCAAGGTGTCCC-CCATCCCCAGACCTGGGATCCCCCTCAGTTACAGTTAAATAGAGAGAGGAAGATCTCCCCAGGGGGCTTTGGGGGGAGGGTCT-GCCTCCTGCACCC-----ACCCTCTCCACGCAGAGGAGTCTGAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACCAAATCAAGGCAAATACTACAGGTGGCCCCTCCCCAAGGGAAGAGGCCAGAGAGGCTGTGAGTGTATATGTGT-----GTATGGGGGAGAAGGGATGTCTGCGCGTGCGAGCACACGAATGCACTGAGGGGCAGA-TCTGGCTCCGGCCAAAGAGA-CATCAGTCTATAAGGTGCAGATTAAAAACAACAGAGAGGACCCACCCCCAGGGGCCCA---GGCCACTTCCATCTTTGTTCTGTCTTTTTCTCCTCCAGACATCCTGGTAGGTGATGCAGAGGAGCCCTCACAACTGTGCCCGGATCCAAGGCAAACCCTCTTAAAGGACTT----------------------------------------------------------------------------------------------------------CTGTGACCTGCGGGGACTGCACCACAGCTTTCTTGAGGAAGGCTTCTGCCTCTGCAAAGGGCAGGAGTGTCTCTGGTGTTCGGCTCAGACTCTTGTCCCCAGAGGGTCCGTTGGTGGAGAAGCCATTCTCCTGGTGTGCTGGGAGAGGCTGCAGGCCATTCACCAGGGACGCTGGCAACTCCTTGCTTGGGAGA------------------------------------------------------------------------------------------------------------------CTCCACTGAGGCTCCTGTGGGATGGGCTCCTCTTTCTGCACAGCCTCCTTCTGCAGCCCTGGGGACCGAGCCTCCACAGCTTTCACAGGCTCT s mm3.chr4 124251695 1102 + 152921959 TTTGGCAGAATTTTTCTCCCTTTATTTCCGGAGAAGTTTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCAT---CACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAAT----AGAGGAAGATCTGCCCAGGGAGACTTGGGAGGGGGGTTCTGCCTCCTGTACCCTACCCGCCTCTTCCACATAG-----------CACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCA-GGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGG-TGTCCGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGT-CCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAAAAACAA-AGAGGAACTCTGCCCCCAGGGGTCCACCAGGCCACTTCCATCTTTGTTCTGTCTCTTTCTCTTCCAGACACCCACG-AGCTGATATGGAGGAACCTTCACAGCTGCACCTCGGTCCAAGGCAAT-TTGCTTAAAGAACTTCTAAGGGAAGGGAGAGGGA-----TAAAGGTTAGGCCCGGGGAGCCCCAGGCAGGGATGGGTGGGATGCAGCTGGGTGCCAGAACCAGGGTCCCTAGAGTCCCCACCTGTGACCTGTGGAGGCTGCACCACTGCTTTCTTGAGGAAGGCTTCTGCCTCTGCAAATGGGAGGAGCCCCTCTGCTGTGCGACCCAGACTCTTGTCCCCAGCGGTTCCCTTTGGGGAGAAGCCGTTCTCCTGGTGCGCTGGGAGAGGCTGCAGGCCATTTACCAGGGACCCTGGCATCTCCTTGCTTGGCAGGCTGTGGATGTAGGGGTTCAGGGTTAACACCTCACCTCCCTGGGAAGCCCAGAGGAGTCCACAGCTCTAGCCTGCAGCTGCTGGCCTGGGAGTCCCTGGGATTGGGAGCTGGTACCTCCACTGTGGCTCCTGGGGGGCCAGCTCCTCTTTCTGCATAGAATCCTTCTGTAGCCCAGAGGGCCGAGTCTCTACAGCTTTCACAGGGTCT s rn2.chr5 159879779 1098 + 191625135 TTTGGCAGAATTATTCTCACTTTATTTCTGGAGACGTTTGATCAGATGTAATAACACTGATTCCAGGCCAGGACAGAGGGTAT---TGCCCCTGAAGCAACCAGTATTCTGTGGCCCAAGGTGCCCCTCCGTTCCCAGACCTGAGTTCCCCGTCGGTTA--GTTAAAT----AGAGGGAGATCTTCCCAGGGAGTCTTGGGAGGAGGGTCC-GAGTCCTGTACCC-----GCCTCGTCCACGCAGAGGTGTCTGAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCGTGGGGGGAGGCCAGAGAGGCTATGAGTGTATGTGTGT-------ACGGGGAAGGTGGG-TGTCCGAGCGTGTGAGCACATGAACGTGCTGAGGGACAGGACCTGCTTTCAGCCAAAGACATCATCAGTCTGTAAGGTGCAGATTGAAAACAA-AGAGGAGCTCTGCCTCCGGGAGCCCA---GGCTGCGTCCATCTTTGTTCTGTCTCTTTCTCTTCTAGACACCCACG-AACCGACATG-AGGAACCTTCACAGCTGCACCCGGGTCCAAGGCAAT---GCTTAAAGAACTTCTACAGGAAAGGAAGGAGAGGTGGTAGAAGTCAAGGCTGGGGAGTCCCAGGTAGGGATGGGTGGGGTGCAGCTGGGTCCAAGAGCCAGGGTCCCTACAGTCCCCACCTGTGACTTGTGGAGGCTGCACCACCGCTTTCTTGAGAAAAGCGTCTGCCTCTGCGAATGGGAGGAGTCCCTCTGCTGCTCGACCCAGACTCTTGTCCCCGGCAGTTCCCTTTGCGGGGAAGCCGTTCTCCTGGTGCGCTGGGAGAGGCTGCAGGCCATTTACCAGGGACCCTGGCATCTCCTTGCTTGGCAGGCTGTAGATGTAGGGGTTCAGGGTTAGCACCTCACCTCCCTGAGAAGCCCCGAGGGGTCCAAAGCTCCAGGCTGCAGCTGCCTGCCTGG-AGTCCCTGGGGTTGGGAGCTGGTACCTCCACTGTGGCTCCTGGGGGGCCAGCTCCTCTTTCTGCATAGAATCCTTCTGTAGCCCAGAGGGCCGAGTTTCTACAGCTTTCACAGGGTCT a score=8439.000000 s hg15.chr12_random 245463 44 + 590431 GGGCTGGAACCGTTGGCGTTGGCCTCCTTGCTGTCCTGCTTCTG s mm3.chr4 124252895 44 + 152921959 GGGCCGGAATTGTTAGCTGCGGTCTCCTTTGCATCCTGCTTCTG s rn2.chr5 159880975 44 + 191625135 GGGCCAGAATTGTTAGCCATGGTCTCCTTTCCATCCTGCTTCTG a score=9295.000000 s hg15.chr12_random 245507 40 + 590431 CTTGGTTTCAGAAACTTCTGACTTCCGAGTCCTCTTCATG s mm3.chr4 124253121 40 + 152921959 CTTGGTTTCGGCGGCTTCTGATTTCCGAGTCCTCTTCATT s rn2.chr5 159881199 40 + 191625135 CTTGGTTTCTGCGGCTTCTGACTTCCGAGTCCTCTTCATT a score=145515.000000 s hg15.chr12_random 245547 639 + 590431 ATCTCCTCCAGACG-CTTTCTGCGCTCTTGCCGCTCTTGCTCCTGCTGCTGGAAGTGCTTTTCCCGCTCCAGACGCTGCCG-TCCGCCTCTTCCCGCGACCGAGCTTCGGcctcctcttt----------------------------------------------------------------------------------------------------ctgcttctgcagccgctcctgctcctcctgctcggcctgcgctttctctcgtgcctcctgctcctcccgcctccgggcctccgcctc-----------------------------------------------------------------------------------------------------------------------------------------------------------------ccgctccgg---------------ctgctccCGGGCCTGGCGCCGCTTCTCAGCCAAGAGCCGAGTGGCTTCTTCTCGGTCTGTGGTGCCGGCCATTGGTTTGCTAGGGGTCACCGGGGGAGCAGGGGCTGGGGGTGAGGTC---------------------------AAGACAGCAGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTAGGGGTCTCCGCGGGGGGCTGCTCCTTCTGGGGCGGGGCTGGGGTGGGCGAGGGCGCCGGCGAAGGTGCCGGTGAGGCTGGGGCTGCTGACTCCTTCTCGTTACTGGCCCTGCGCTTGCTCTGGCTCTTGTCCTCGGGCCCTGCGGCGCTGGGGCTCTCCTTTGCCTCCTCCTTCCTCCGAACCCGCCCCTTGGGGGATGCAGTGGTGCCTCGGGGGGACGGTGGCTTTGGAGGCAGAGTGTGGCCTGGCCCTGGGCTGGGGCAGGGGGAGGCAGGCCTGTGCCAGGTCG s mm3.chr4 124253406 1183 + 152921959 ATCTGCCCTGGACACCTTTCTTCGCTCTTGTCTCTCCTGTTCCTCCTTCTGAAAGTGCTTTTCCCGCTCCTGGCGCTGGCGCTCAGCTTCTTCCCGGGACCGGGCTTCGGCTTCCTCTTTCTGCCAAAGGCCTCCATAAGTTTCGGATTCTCTGTTTCAGCCTTCCCTCCCAGGCAAGCCCACCGATTGCCAGCCAAGATCTGCCCGCCCGCCTGGGCACCTGCTTCTGCAGTCGCTCCTGCTCCTCCTGCTCAGCCTGCGCCTTCTCTCGAGCCTCCTGCTCCTCCCGTCTCCGCGCCTCGGCCTCACGTTCAGCCCGGGCTTCAGCCTCCCGGGCCAGCTGCTCCTCTCGCATTCGCCTGGAGGACCCAGGAAACTCAAGTTTGGTCTGCGCCTCTTCTTCAGGCACTCTAGGGACCCTCACAGTCCCCGAGGTCACACTCACTTGTCCCTTTCAGCCTGCAGCTTCCGCTCCTGTTCTTCGCGTTCCCTCTGTTCCCGAGCCTGGCGCCGCTTTTCAGCCAGGAGCCGCGTGGCTTCCTCTCGGTCTGTGGTGCCCGCCATGGGTTTGCTAGGGGTCACCGAGGGAGCAGCGGTAGGAGGGGCAGTC---------GGAGCAGCTGGGACAGCCGGGACAGCAGTTTCTAGAGGAAGATCCAAGACCAGGAGTTAGTACACACCAGTACAGGCCCCTCCATCAGCCCTGTGCGCCC---------CCATGCTTTCAGGACTTCAGCTATGCACGCATTCAATTCAATTGTTGCCATTACGGGTGTCGGAGACCTGGG-AGGAGGTCCCTCTTCCTGTCCCTTGTGACCAGTGTCTGTTGGCCCACTTCCCGGACATAGGAAAAGCTGGCACATCTCTGCCCTGCCCACCCTCACTTCCTGTGTACCTGCAGGGATCTGTGTTGAGGATTGCTCCTTCTGAGGCTGGGCTGGGGTGGGCGAGGGCACCGGTGAGGGCGCTGGTGAGGCTGGGGCAGCTGGCTCCTTCTCCTCAGCGGCTCTACTCTTGCGGTGGTTTTTGTCCTCAGGCCCCGACGGGCTGGGGCTCTCTTTTGCCTCCTCCTTCCTCCGAACCCGCCCCTTGGGTGATGCAGTGGTGCCTCGGGGGGATGGTGGTTTTGGAGGAAGGGCATGTCCTGGTCCTGGGCTGGGGCAGGGGGAGGCAGGTCTGTGCCAGGTTG s rn2.chr5 159881470 1175 + 191625135 ATCTGCCCTGCACACCTTTCTTCGCTCTTGTCTCTCCTGTTCCTCCTTCTGAAAGTGCTTTTCCCGCTCCAGGCGCTGGCGCTCAGCTTCTTCCCGGGACCGAGCTTCGGCTTCCTCTTTCTGTCAAAGACCTCCATAAGTTTTGGGCTCTCTGCTTCAGCCTTCCCACCCTGCCAAACCCACCTAGAGCCAGTCAAGCTCTGCCCGCCTGCCCTGGCACCTGCTTCTGCAGCCGCTCCTGCTCCTCCTGCTCAGCCTGCGCCTTCTCTCGAGCCTCTTGCTCCTCCCTTCTCCGGGCCTCAGCCTCACGTTCAGCCCGGGCTTCAGCCTCCCGGGCCAGCTGCTCCTCCCGCATTCGTCTGGAGGACCCAGGAAACTCAAGTTTGATCTGTGTCTCTTCTTCAGGCACTACAGGGGCCCT--CAGTTCCTGAGGTCACACTTACTTGTCCCTTTCAGCCTGTAGCTTCCGCTCCTGTTCTTCCCGTTCCCTCTGTTCCCGAGCCTGGCGCCGCTTCTCTGCCAGGAGCCGAGTGGCTTCTTCTCGGTCTGTGGTGCCGGCCATGGGTTTGCTAGGGGTCACCGAGGGAGCAGCGGTAGGAGGGGCAGTCGGGAAAGTAGGGACAGTGGGGACAGCCGGGACAGCGGTGTCTGGAGAAAGATCCAAGACCAGGAGTTAGTGTACACCAGTACAGGCCCCTCCATCAGCCCTGCACGCCCCATCCCCCGCCACACTTTCTGGACTTCCGCGATCCACTCATTCAGTTCAGTTGTTGCCATTCC-GGTGTCGGAGACTTGGGCAGGAGATCCCTCT---------------------TCTATTGGTCCAC-TCCCAGACACAGGAAAAGACGGCAC--TTCTGCCCTGCCCACTCTCACTTCCTGTGTACCTGGAGGGATCTGTGTGGAGGACTGCTCCTTCTGAGGCTGGGCTGGGGTGGGTGAGGGCACTGGGGAGGGCGCCGGTGAAGCTGGGGCAGCTGGCTCCTTCTCCTCAGCGGTTCTGCTCTTGCTGTGGTTCTTATCCTCCGGTCCCGATGGGCTGGGGCTCTCTTTTGCCTCCTCCTTCCTCCGAATCCGCCCCTTGGGTGATGCAGTGGTGCCTCGGGGAGATGGTGGTTTTGGAGGAAGGGTATGGCCTGGTCCTGGGCTGGGGCAGGGGGAGGCAGGTCTGTGCCAGGTTG a score=81303.000000 s hg15.chr12_random 246224 599 + 590431 AATTGTAT-AAAAAGATTTATTGAAATTTATCAATGACAAACAGACATAAAACTCAAAGTTTGGCTCTTCTGAGGGGCAGGAGAAAAACTGGT-GCAGATGTTCTTTTATACAGATGAAACATGGGTTCAGAA----ATTACACGTCACTTCTAAAGCAA-CCAGAAGAGGGACAC-GAAAGCAAACCTGTACATTCACTAGG---AATTTGCAGTCATTTCAGATTTCCACTAGGTAAGAAAATACAATTTTGCGTTAGTTTTTCCGTGCTCGGGTGTAT--------GAAAA----------AAAAACCCAGCCGACAT--GCAGCAACGTCTCCAGCGCTTAGGTCCGTAAAAATGTTCTAAGCACAGAAGTACATGTGGAAGAATTCTCTCATCATTTTTTGTAAAACAAAGCGTTCTAATATTTTACAGAACAAGATAGGACAG--------TTTTTTTTTTCTTTTAAAGAAGTTGAAGTTTGAAGGTGTGTTTC-TTCTAATTTTAA-----TTACCAAATCC------ATTTTCCTTGTAACTTAAC-----ACAACAAGCCTGCGGTTTTC-----AGCTCTCTGGCTCATAAGCTCAAGAGTAACATCAGAGTCCTCTTTG--TAGAGCGAAGCCCACCACCATCTGTGAAG s mm3.chr9 61899962 641 - 124467299 AATTGTATAAAAAAGATTTATTGAAATTTATCAATGACAAACAgacataaaactcaaagtttggctcttctcaagggcgggagaaaaatgagtggcagttgttc---tgtaccaatgagacgcagggtaggagggacacagcacgtcacttctaaagcgatctggaagagggatgcagaaggcacaca---gcattccctaggagaaacctgcggCCATTTCAGAGTCCCACCGGGTAAGAAAATACGAGTTTGCATTC-CTTTCCTGTGCTCCAATGTATGTGAGAAGGAAAACAAGCAGAACAAAACCCCAGAGGACTCTTGGAG-GGAGC-TCCAGAGCGTAGATTTGTAAAAGGGTTCTAAG--CTGGAGCGCCTGAG-ATGCGTCCTCCTGTCA-TTTCTGCAAAACCAGTTGCTCTAATATTTTACAGAACCAAATAGAACAGTTTTTTTTGTTTGTTTTTGTTTTTAAGAAGCTGAAACATGAAGGTTCACTTCTTTCCCATTTTACAAGTATCTCCTAACCCTGCCGTTTTTTGTTTTTTTCTTGTT-----GTTGTTATTTTGATTTTTTCTTTTTGGCTCTCGGGATCAT-AGCCCCAGAGTAATA--AGAGTTCTCTTTGCAAAAAGCAAAGCCCACTGCCATCTGTGGAG s rn2.chr8 63743312 611 - 127756414 AATTGTATAAAAAAGATTTATTGAAATTTATCAATGACAAACAGACATAAAACTCAAAGTTTGGCTCTTCTCAGGGGCGGGAGAAAAATGAGTTACAGCTGATC---TGTACAAATGAGACACAGGGTAGGAA----ACAGCACGTCACTTCTAAAGCAATCTGGAAGGGGGACGCTGAAGGCACAC----GCACTCTCTAGGAGAAATCTGCGGCCACTTCAGAGTCCCACCAGGTAAGAAAATACGAGCTTGCATTC-CTTTTCCGTGCTCCTATGTATTTGAGAAGGAAAACAAACAGAACCAAAACCCAGAGGACAC--ACAG-GGCGCTTCCAGAGCTTAGATTTGTTAAAAGGTTCTAAG--CTGGAGCGCCCGAG---GAGTCCTCCTGCCA-TTTCTGTAAAACAAATTGCTCTAATATTTTACAGAACAAGATAGAACAG--------GTTGGCTT---TTCTGAAGAAGCTGAAACACGAAGGTTCACTTCTTTCCCATTTTAC--GTGTCTCCTAAACCTGCCGCGTTTTGTTGTTGTTTTGTTTTCTGtttttttttcttttcttttcttttTGGCTCTCAGGATCAC-AGCCATAGAATAACA--AGAGCTCTCTTTG--------------CACTGACATCTGTGGAG a score=14993.000000 s hg15.chr12_random 246823 340 + 590431 GG--GGAAAAGGGATGAGAGATGGGGAATGTCCCCAGACCAGTGCCAAAATACGCCTTTAGGTTGCTATTTACAAACCAGGGCGTTGGATGCCTCTAGCAGGCCTGAGAAAAGCAGGTATCATCATGTGAACCAAAGCAAAAGATATGGCTGGTGCTCAGCCCCTCCTGGGCATTGAGTAACCAAACTGAGACCAGCCACAGCCTTCCAACCAACCCAAGAGACTTGGGAAATACCAGGAAACGTAAGAGAACTCCAAACCATCCTCTTT-GAGAGTCAGGAACAAATGCTCACTTAGTGTGTACTTAGCTATCGCATTTACAGGGACAAAAACCGGACACAA s mm3.chr9 61900603 318 - 124467299 GGAGGGAAAAGGGATGCGAGATGGGGACTGTCCCCAAACCAGTGCCAAAATACGCCTTTTGGTTGCTATTTACAAACCGGGGTGCTGGGTGCCTCTGGCAGCGACCACACGAACCG------------GAACCAGAACAGGAGTTAGTGAAGATGA-CAG--------GGGCTGTGAGTCACCTGGCAGAGGCCAGCCACGGCCTCCCGATCAACTCTGGGGATGTAGGACATACCAGAAAATGT--TAGACCTCCAAGCCATCCTCTCCAGAGAGT-AAGAACAAACACTTGCTTGGTGTGCACTAAGCTATTGCATTTATGGGGAC-AAAACCAGACACAA a score=11352.000000 s hg15.chr12_random 247163 60 + 590431 AGAAAAAGTAGGGGAAAAAAATAAAGAGTGGCAGTAAAAATAGTATTTTATTCCACCCCC s mm3.chr9 61900921 59 - 124467299 GGAAAAAGGAGGGG-GGGAAATAAAGTGTGGCAGTAAAAATAGTATTTTATTTCCTCCCC s rn2.chr8 63744340 58 - 127756414 GGAAAAAGGAAGGG-GGAAAAGAAAGTGTGGCAGTAAAAATAGTATTTTA-TTCCTCCCC a score=50482.000000 s hg15.chr12_random 247225 237 + 590431 CCGCCATCCCTCCC----CCCGCAACCCCCAGTACACTCTTCCCCTCTCGTTCCCACAGCAACGTTACAATCAGAAAAAAATAAGTTTCAGGGGGCAGGATTGGAGGGGGGGGGGAGAGGGGATATGGGTAAAAACAGTCAAATCACAATAGGAATTTTTCAAAATAGGTT-ATTCCACTTAGTCATCATCTTCTCCCTCATCTTCAGGTTCTCGTTTTCGCTTCTGACCCCTTTCTTCTTC s mm3.chr9 61901082 230 - 124467299 CCCACCCCCACCCC----CCATCAACCCCCAGTACACTTTTCCCCTCTCCTTCCCACAGCAATGCTACAATCAGAAAAAAATAAGTTTCGGGGGGCAGGAAT------AGGAGGGGGAGGGGATATGGGTAAAAACAGTCAAATCACAATAGGAATTTCCCCAAACAGGTTCATT--CCTTAGTCATCCTCTTCGCCCTCATCGTCCGGTTCTCGTTTTCGCTTCTGACTCCCTTCTTCTTC s rn2.chr8 63744399 236 - 127756414 CCCACCCCCACCCCACCCCCGGCAATCCCCAGTACACTTTGCCCCTCTCATTCCCACAGCAACGCTACAATCAGAAAAAAATAAGTTTCGGGGGGCAGGAAT------AGGAGGGGGAGGGGATATGGGTAAAAACAGTCAAATCACAATAGGAATTTCCCCAAACAGGTTAATTCCCCTTAGTCATCCTCTTCGCCCTCGTCATCGGGCTCTCGTTTTCGCTTCTGACTCCCTTCTTCTTC a score=16569.000000 s hg15.chr12_random 247462 230 + 590431 ACCAAGCTCTTCTTCATCTTCCTCGTCATCTACCTCTCCATCGTTATAACCTTCTTCAtcctcctcctcctctccactcacgtcctcctcttcaccttcctcctcctcatcctcgtcctcctcgtcttccactacctgagcatcttcatcatactcctcctcatcctcatcctcctcctcATCATCCAGGCCCTCCACGTAGC---------CCTCAGCATCCGAG------TCAGGGGCCTCCT s mm3.chrX 120521845 228 - 149996094 ACTAGCATACTTTTCATCTTGCTCATCATCCAAAACTCCATCCTTGTAAC------CTTCATCCTCCTCCTCTCCACTCACGTCATGTTCTTCCCTATCCTCCTCTGCATGCTC--CCTCTTCTTCTTCCACTAGCTGCATATATTCATCGTA---TTCCTCATCCTCATTTTTCTTCCTGTAA------ACCTCCAGGTAGCATTCCTCGACTTCAGAACCAGAGTAAGAATCAGGGGCCTCTT s rn2.chr5 110440417 159 + 191625135 ACTAGCACATTCTTCATCTTCCTTATCATCCATGTCCCCATCCTTGTAAC------CATCATTTTCCTCCTCTTTTCTCA---CATGGTCTTCC---------------------------------------------------------------TCCTCATCCTC-TTTCCCTTGCTGTAA------ACCTCCATG-AGCATTCACAGATTCCAGAATCAGAG------CCAGGGGCCTCCT a score=7834.000000 s hg15.chr12_random 247697 170 + 590431 TCCCGGTCATAGCCGTCGAGATATGTGAGTTGCGGGAGGAGCTTGAACACATTTTCTCGGTAGTCGTTCAGGTTGGTTACCTCGCAATTGAAAAGGTCTAAGCTCTTGAGGTTTTCTAACTTTTTCAGTGGCTCTATTGTGCTGAGGTCTTTAATTTTGTGTCGACGCGG s mm3.chr4 11365429 170 - 152921959 TCTCGGTCATAGCCATCCAGATAGGACAGCTGGGGCAGGAGCCTGAAGACAGTTTCTCGGTAATCACTCTGGTTAGTGACCTCACAGCCAAACAGATCCAGGCTTTTCAGACAATCCAACCTTTTCAACGGCTCCAAGGTGCTGATATCTTTCAGGTTATTTCCACTTGG a score=111697.000000 s hg15.chr12_random 247883 1805 + 590431 TTGGTGACAGCGAAAGAACGATAACAAAATGCCGGAGCGAGATAGTGAGCCGTTCTCCAACCCTTTGGCCCCCGATGGCCACGATGTGGATGATCCTCACTCCTTCCACCAATCAAAACTCACCAATGAAGACTTCAGGAAACTTCTCATGACCCCCAGGGCTGCACCTACCTCTGCACCACCTTCTAAGTCACGTCACCATGAGATGCCAAGGGAGTACAATGAGGATGAAGACCCAGCTGCACGAAGGAGGAAAAAGAAAAGTTATTATGCCAAGCTACGCCAACAAGAAATTGAGAGAGAGAGA------------------------------------------------GAGCTAGC----AGAGAAGTACCGGGA----TCGTGCCAAGGAACGGAGAGATGGAGTGAACAAAGATTATGAAGAAACCGAGCTTATCAGCACCACAGCTAACTATAGGGCTGTTGGCCCCACTGCTGAGGCGGACAAATCAGCTGCAGAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGACATGGAACACACCCATTTGGTGAAAGGCTTGGATTTTGCTCTGCTTCAAAAGGTACGAGCTGAGATTGCCAGCAAAGAGAAAGAGGAAGAGGAACTGATGGAAAAGCCCCAGAAAGAAACCAAGAAAGATGAGGATCCTGAAAATAAAATTGAATTTAAAACACGTCTGGGCCGCAATGTTTACCGAATGCTTTTTAAGAGCAAAGCATATGAGCGGAATGAGTTGTTCCTGCCGGGCCGCATGGCTAGTGTGGTAGACCTGGATGATGAGTATGCTGACACAGATATCCCCACCACTCTTATCCGCAGCAAGGCTGATTGCCCCACCATGGAGGCCCAGACCACACTGACCACAAATGACATTGTCATTAGCAAGCTGACCCAGATCCTTTCATACCTGAGGCAGGGAACCCGTAACAAGAAGCTTAAGAAGAAGGATAAAGGGAAGCTGGAAGAGAAGAAACCTCCTGAGGCTGACATGAATATTTTTGAAGACATTGGGGATTACGTACCCTCCACAACCAAGACACCTCgggacaaggagcgggagagatatcgggaacgggagcgtgatcgggaaagagacagagaccgtgaccgagagcgagagcgagaacgagatcgggaacgagagcgagagcgggaccgagagagagaagaggaaaagaagagACACAGCTACTTTGAGAAGCCAAAAGTAGATGATGAGCCCATGGACGTTGACAAAGGACCTGGGTCTACCAA-----------------GGAGTTGATCAAGTCCATCAATGAAAAGTTTGCTGGGTCTGCTGGCTGGGAAGGCACAGAATCGCTGAAGAAGCCAGAAGACAAAAAGCAGCTGGGAGATTTCTTTGGCATGTCCAACAGTTATGCAGAGTGCTACCCAGCCACGATGGATGACATGGCTGTGGATAGTGATGAGGAGGTGGATTATAGCAAAATGGACCAGGGT-AACAAGAAGGGGCCCTTAGGCCG-TTGGGACTTTGATACCCAGGAAGAATACAGCGAGTATATGAACAACAAAGAAGCTTTGCCCAAGGCTGCATTCCAGTATGGTATCAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAATGACAAAGCAGAGCTTGATCGCCAGTGGAAGAAGATTAGTGCAATCATTGAGAAGAGGAAGAAGATGGAAGCTGATGGGGTTGAAGTCAAAAGACCAAAATACTAATCACTAGTTACAACCAGAGATGCTCCACAAGGATATGCTCCCCACTGTTTTCTTTCTACAATT--TCCAAAGGTTGCAAGATGTTTT---TTTGTGGATGAATATAAA s mm3.chr19 35740096 1795 + 61093376 TTGCGGGCACTGAGAGACTGAGGCCAGAATGCCAGAGGGAGATAGTGAGCCCCTCTGTAACCCTTTGGCTCCAGATGGCCATGATGTGCATGATCTTCATTCCTTCCACCAATCAAAACTGACCAATGAAGACTTCAGGAAACTTCTTATGACCCCAAAAGCTGTACCTCCTTCTGCACCACCTTCTGAGTCGAGTCACCATGAGATGCCAAGAGAGCAAAATGAGGAAGAAGACCCAGCTGCACAAAGGAGGAAAAAGAAAAGTTATTATGCCAAGCTTCACCAGCAAGAAATTgagagagagagacatagagagaaacagagagagagagagagagagagagagagagagaTTGAACTATCTCTTGGAGAAATACTGGGGCCATCCATGCCAAGGAACGGAGAGATGGTGTGCACAAAGGTTATGGAGAACATGAGCTGATAAGTACCACAGCCAACTACAGGGCCGTGGGCCCCACTGCTGAGGCAGACAAATCAGCAGCAGAG--GAGAAGACGGTTGATTCAGGCGTCTAAATTCTTGGGTGGTGATATGGAACACACCCATTTGGTGAAAGGTTTGGAATTCGTGTTGCTTCAGAAGGTGCGTGCTGAGATTGCCAGCCAAGAGAAGGAGGAAGAGGAACCCATGGAAAAGCTCCAAAAGGAAACCAAGAAAGATGAGGATCCTGAGGACAAAATTGAATCTAAAGCACGCCTTGGCCGAAATGTGTATCGGGTGCTTTGCAAGAGTAAACCATATGAATGCAATGAGCTGT--------------ATGACCTATGTAGTAGACCTGGATGATGAGAACGCAGACACAGATCTCCCCACCGCTCTCATACGCAGCAAGGCTGATTGCCCCACTATGGAGGCCCAGACTACACTGACTACAAATGACATTGTTATTAGCAAGCTCACCCAGGTTTTGTCATATCTGAGGCAGGGGACCCGAAACAAGAAACT---GGAGAAGGGTAAAGGAAAACTGGAAGAAAAGAAACCTCCTGAGGCTGACATGAACATTTTTGAAGACCTTGGGGATTATGTTCCTTCCATAACCAAGACACCTCGGGACAAGAAGCGTGAGGGGTACCAGGAACATGACCAT------------------------------------------GAATATGATCGGGAACGGGAGCAAGAG------------------AAGGAAAAGAAAAGGCACTGTCACTTTGAGAAGCCAAAGGAGGAGGATGAGCCCATGGATGTTGACAGAGGACCTGAGTTGATCAAGTCTATCAATGAGCAACGGAGTTGATCAAGTCTATCAATGAGACATTTGCTGGGTCTGCTGGTTGGGAAGGCACCGAATCACTGAAGAAGTCAGAAGATAAGAAGCAGCTGGGTGATTTCTTTGGTATGTCCAACAGTTAGGCAGAACGCTATCCAGCCAGGATGGATGGCATGGCTGTAGATAGTGATGAAGAGGTAGATTATAGCAAAATGGACCAGGGTAAACAAGAAGGATCCCTTAGGCCTCCCGGGATTTTGATACTCAGGAGGAATACAGTGAGTACATAAACAACCAGGAGACTTTGCCCAAGGCTGCATTCCAGTATGGTATCAAGATGTCCGACGGACGGAAAACCAGACGGTTCAAAGAAACCAATGAGGAGGCAGAGCT---TTGACAGTGGAAGAAAATAAGTGCAGGGATTGAGAAGAGGAAGAAGATGGAAGCAGATAGGGTTGAAGTGAAAAGACCAAAGTACTAATCCCTAGTTCCAGCCA-----TCACCACGTGGCTGTTCT---TAGTTGCTTCTTTCTACAATTCCTCAGAAGGTTGCAAACTGTTTTTTGTTCGTGAATGTTTCTAAa a score=14763.000000 s hg15.chr12_random 249688 116 + 590431 ATTTTATTGTGTAATTACTTGGTTCCATTAAAATTGGTTAACTTG---CTAAAAAGTCGACGCGGCCGCGTCGACTCGGTTTTAACATTT---TATTGGGTAAATGATTTTAAAGGTAATAA s mm3.chrX 10345445 117 + 149996094 ATTTTACTGTGTCATCATTTGGTTCTGATAAAATTGGTTAGCTTGAAAATAACAAATTACAGGAACCACCTGGACTCAG-----ACAATGGGATACTATGTAATTATTTATAAAAAGAATAA s rn2.chrX 22904389 117 + 133900917 ACTTCACCATGTGATCATTTGGGCCTGTTAAAATTGGTTAGCTTGAAAATAACAAATTACAGGCACCACCTAGACTCAG-----ACAGTGGGATACTATGCAATTATTTATAAAAAGAATAA a score=94834.000000 s hg15.chr12_random 249804 408 + 590431 CAATAGTGTCAAAACTACTACAATATCTTTCCACAGCCATACCTTACAGACCCACATAAACCTTCTCATATTTTT-TCTTTTT--GCTCATATTTAATATTGTAAAGCCATACATGTCATATAAAATGCCCATTTCCAATAGTTTCTTCAAACTATTAAGCAATTAAATGTGGAAGGAAGGAGG----GCCTAGTTATACTGGAAGGGGTTTCAGGTAATCTGTGATGTCTTACGGTAATCAAAA-AACAGGTTACTAAGAAAGAAGGAAAAGAGGAGCTACTCCAGGTAGCTTTTTGCTCATTACAAGTCTCACCATTGTATCACCAAGAACTCATTATGCTGGTGACAGATTCAAAGTAATTTTGGGGAACATATAAAACACTAAAATAACTTAGAAACTAGATCCAAATATTT s mm3.chrX 124626026 411 + 149996094 CAATAGTGTCAAAGCTACTACAATGTCTTTCCACAGCCATACCTTACAGACCCACATAAACCTTTTCATATTTTTCTCTTTTTTTGTTCATTTTTAATATTTTAAAGCCATACATGTCATATAAAATGCCCACTTCCAATAACTTCTTCAAACTAGTAAGCAATTCAGTGTGGAAGGAGGGAGGGAGGAGCTGGTTATAAC-GAAGGGCTTTTAGATAACCTGTGATGTCTCACTGTAATCAAAACACCAGGTTACTAAGAAGGGAGGAGA----GAGCTACTCCAGGTAGCTTTTTGCTTGTTACAAGTCTCACCATTGCATCACCAAAAACTCTTTATGCTGGTGACCGATTCAAAGGAATTTTGGGAAACATATAAAACACTAAAATAACTTAGAAACTAGATCCAAATATCT s rn2.chr7 133096907 405 + 139049774 CAATAGTGTCAAAACTACTACAATGTCTTTCCACAGCCATACCTTACAGACCCACATAAACCTTTTCATATTTTTGTCTTTTT--GTTCATTTTTAATATTTTAAAGCCATACATGTCATACAAAATGCCCACTTCCAATAGCTTCTTCAAACTAGTAAGCAATTCAGTGTGGAAGGAGGGAGG----ACCTGGTTACAAC-GAAGGGGTTTTAGATAATCCGTGATATCTCACTGTAATCAAAACACCAGGTTACTAAGAAGGGAGGGTA----GAGCTACTCCAGGTAGCTTTTTGCTTGTTACAATTCTCACCATTGCATCACCAAAAACTCTTTATGCTGGTGACCGATTCAAAGGAATTTTGGGAAACATATAAAACACTAAAATAACTTAGAAACTAGATCCAAATATCT a score=40397.000000 s hg15.chr12_random 250327 183 + 590431 AACTATGTAAAGCGTCTTCAGCATCACGAACATCCTCAAATTGAACATAAGCAAATCCTCTTGGACGGCGAGTGTAGAAATCAAGTGGCACATACACATCAACTATAGGACCATAACGACCAAATTCACGCCGCAAGTCTTCAGACCTGGTGTCGTCGGCCACGTTCCTGACGAACAGAGACG s mm3.chr13 19399155 183 + 116242670 AATTATGTAAAGCGTCTTCAGCATCACGAACATCCTCAAATTGAACATATACAAATCCTCTTGGACGCCGAGTGTAGAAATTAAGTGGGACATAAACAACTACTATTGGACCATAACGACCAAATTCCCGACGTATATCTTCAGACCTGGTGTCGTCCGCCACGTTCCTGACGAACAAAGACG s rn2.chrX 34803732 182 - 133900917 AATTATGTAAAGCATCTTCAACGTCACAAACATCCTC-AATTGAACATATGCAAATCCTCTTGGACGTCAAGTCTAGAAATCAAGTGGAACATAAACATCTATTATTGGACCATAACGACCAAATTCCAGATGTAAATCTTCAGACCTGGTGTCCTCTGCCAGGTTTCTGACGAACAGAGATG a score=12846.000000 s hg15.chr12_random 250510 68 + 590431 TGTTGGGGGGA-------CGCAGGTAGCGGGACATGGCGGCGGCGTGTCTC--GGCCGGGCGCACTAACGGGCTCAG s mm3.chr13 19399338 77 + 116242670 TGTTGGGGGGGGGGGGGGCGCAGGTATCAGGACATGGCGGCGGCGGGACTCTGGGCCGGCGGCGCTAACGAGCTCGG s rn2.chr5 19666850 69 - 191625135 TGTTGGGGGGG-------CGCAGGTATCGGGACATGACGGCGGCGGGGCTCTGGGCCAGCGGCGCTAACGGGCTCG- a score=636.000000 s hg15.chr12_random 250578 21 + 590431 CGTCGACG----CGGCCGCGTCGAC s mm3.chr12 107434534 25 + 114462600 CGTCCACAGCTCCGGCGGCGGCGGC a score=30130.000000 s hg15.chr12_random 250599 355 + 590431 ttttttttttttttttttaatttcatctaattagttttaaaatttattCTCTACTCACAA-GAAGCATAAATAAAGGTTTCACTCTTATATAAAGACCTGACAATACATACAATGGTCCTCTGCTGATTTGGAAGCAAAGACAGTTTTCTACGACAGTCTGTTCTTTATAATGTATAACTGTTGTGGGAAAAAAGAAAATCCATTTCTTATTGTAATTATTTTTCTTATTTGAGGTTTCTTTTCCACGATGACCCAACCACAAGTTTGGGAACATTGCTTCTGAGGCCCATTCTCTGATGAGAAAGTTCAGTCCCAACTGGGGAAAGTACCTGAGTCCCAGCCTTTTCAGCCTAG----a s mm3.chrUn_random 37699923 358 + 117911829 tttttttttttttttttttttttCATTTAATTAGTTTTAAAATTTATTCTCTACTCACAAAGAAGCATAAATAAAGATTTCACTCTTATATAAAGACCTGACAATACATACAATGGTCCTCTGCTGATTTGGAAGCAAGGACAGTTTTCTATGA--GTCTGTTCTTTATAACGTATAACTGTTGTGGGAAAAAAGAAAATCCACTTCTTATTGTAATTATTTTTCTTGTTTGAGGTTTCTTTTCCACGATGACCCAACCACAAGTTTGGGAACATTGCTTCTGAGGCCCATTCTCTGATGAGAAAGTTCAGTCCCAACTGGGGAAAGTAACTGAGTCCCAGCCTTTTCAGCCTAACATTA a score=1500.000000 s hg15.chr12_random 251102 10 + 590431 AAaaataaat s mm3.chr2 60212202 10 - 181423755 AACATTACAT s rn2.chr3 83184831 10 - 165924081 AACATTACAT a score=17827.000000 s hg15.chr12_random 251112 221 + 590431 aaataaataaataaaAATCAAACATCCAAGTATCCACCTTGGGTTGCAGGAAGAGTTAATCTTA-TGCGTTTATTAAAAAAAGTAACTATATAATGTGAAACACCATAAAGTCAGATGGCACTGCATGAGGGATTTTTGCTTCTTTTTCTTAAGGAAAAGGAGTTACATGGAAAATTCTCTCATCCTCCCCCCTCTGCCCCCAACTCCTCTATGTCCAAAGt s mm3.chrUn_random 37700469 220 + 117911829 AAATAAAAAAATAAAAATCAAACATCCAAGTATCCACCTTGGGTTGCAGGAAGAGTTAATCTTAATGCGTTTAC--AAAAATGTAACTATATAATGTTAAAAACCATAAAGTCAGATGGCACTGCTTGAGGCATTTTTGCTTCTTTTTCTTAAGGAAAAGGAGTTATATGGAAAATTCTCTCATCCTCCCCTCTCTGCCCCTGACTCCTCTATGTCCAAAGt a score=57035.000000 s hg15.chr12_random 251631 661 + 590431 AGGTTTTTGTTTAAAATTGGGCCTTTGTTCCTATTCAGTAAATCTATGTCACAGGATGAGCCAGGATTTAAATATACAAATATAAATTTTTAGTATCTTTCACGTCAAATTAGAAACACATATTTGGAATTTACTGCTGCAGTCTCAACTGTGCTTATCATGGTAGTGGCTGAAACTGGAAGACATTTTTTTTAAACCCTGAAGTCATTCATACTTGCTACTTCTTTAGTCTTCTTGCTTGGAATGAAAAGTATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACTCAGCCTTCTGCTTGCAAAATGATGTCTTTATAATTAAGCAAACAGCAAAAGACCCATGTGAGTTGCTTCTTTCTTCCTGGAGATGTTAGCAGGATAACTGGAATCCTAGGAGCTCCTCTGTGTTGAATTTGAGAGGCAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCAAATCATGGAGGTAATGTGTAGAGAAGTGATAGCCACATTTCAAAAAC-GGGAAAGTAACTGGGTAAAAGAAGCAGGACTACCCACTCTAGGAGACAACATAGAGACACTTGCCAAGTCCTGAGTTCAGAATTTTGTTTTTGAGATGAATATAAAAGCACCTAAAGGTCAAGGAAAATTTTCTTCCTGTGATAAGGA--------------------------------------------a s mm3.chrUn_random 37700997 705 + 117911829 AGGTTTTTGTTTAAAATTGGGCCTTTGTTCCTATTCAGTAAATCTGTGTCACAGGATGAGCCAGGATTTAAATATACAAATATAAATGTTTAGTATCTTTCACGTCAAATTAGAAACATATATTTGGAATTTACTGCTGCAGTCTCAACTGTGCTTATCGTGGTAGTGGCTGAAACTGGAAGACATTTTTTTTAAACCCTGAAGTCATCCATACTTGCTACTTCTTTAGTCTTCTTGCTTGGAATGAAAAGTATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACTCAGCCTTCAGCTTGCAAAATGATGTCTTTATAATTAAGTAAACAACAGAAGACCCATGCAAGTTGCTTCTTTCTTCCTGGAGATGTTAGGAGGATAACTGGAATCCTAGGAGCTCCTCTGTGTTGAATTTGAGAGGCAGAACAAAAAGGAAAGTGGCC-TTTCCATTCCAAATCATGGAGGTAACGTGTAGAGAAGTGATAGCCACATTTCAAGAATAGGGAAGGTAACTGGGTAAAAGAAGCAGGACTACCCACTCTAGGAGACAGCATAGAGACACTTGCCAAGTCCTGAGTTCAGAATTTTGCTTTTGAGATGAATATAAAAGCACCTAAAGGTCAAGGAAAATTTTCTTCCTGTGATAAGGAACACAAAGCCTGTTTGGTGGTCTCTTCATACGGACACACATGACA a score=14415.000000 s hg15.chr12_random 252336 208 + 590431 CTTTGCTTTAGTGTAGATGACCACTCCCCTCTATAAGGTAGGGAGGAAGAATGTTCGGTTAGTTCCTCTCCTCTGGCCGAT--ATTTTTTTTCTTCTCCTCGCACGGTCCAACAGATGCACTCGGCCTCCCGGGGGCTGCTCGCCCCCGGCCCAGAGGCCAGTTTGCAGCGGCACGCCTTACTCCGCCGTCGACGCGGCCGCGTCGACTT s mm3.chrUn_random 37701702 201 + 117911829 CTTTGCTTTAGCGTAGATGAGTACTGCCCACTGTAAGGTAGGGACGAAGACTGTTCGGTTAGTTCCTTTCCTCTGGCCGATCCCTGTTTTTTCTTCTCCTCGCACAGTCCAACAGATGCACTCGGCCTCCCGGGGGCTGCCCACCCCCAGCCCAGAGGCCAGTTTACAGCAGCACACCTTACTCCGCCATCTTCGCAG---------CTT a score=107785.000000 s hg15.chr12_random 252544 597 + 590431 TTCAAAAAGACTTTGATTTTATTTTGTGATCTGTGTCAAACTGCCTCATTCTCAGTGCAGGTGATCCCTCCTCCCCAGAAACAAGAACTGACAGGTAGGGT-CTTTGTGAAGTCATGGCTTCCACAAGGCCCCAGGGAAACCCC-----------ACACAGTTCTGAGAGTTGATGGGAATCCCAGCA-AAGATGGGGTGGGTGGGAGACAGTGA----CAAGAAGGGGTGGTGGTCACCAGTCAAGAGGCTGGGGGTTGGAAAACCCTGTCTTTGGCCTTGCTCAGCTTTGGGGCTGCCATGTTCATGATGGAGATGGG--GGAC-TGAAATTTCCCCTGACCTGGAAGTACCCCTTCGGCCAGGCATGGCTTTGATTCTCTGCTAAGGGCTCAGCTGAGAGAGGAGCAGGAAAATGTCATGGGCTGGCTTCTTCACAAGGCATTGCTGCTGATGCTCCGGAGTCCAACACCACGGGCAAATTGCTCCAGCAGGCCCCCGATGGCACCGGAAGGACTGGGGGCTACTGCCCGAAGCCCCACTGTGCTGCTGTACGCAGCCAAGAAGGCTGAGCGCACCTCCTGCAGCCGAGTCTCTCGATCACTCAGGGCTGCAAG s mm3.chr6 35867933 595 - 149950539 TTCAAAAAA--CTTGCTTTTATTTTGTGATTAGTGTGAAATTGCCTCATTTTCAGTGCAGGTGATTCTCCTTCCCAGGAAACAAAAATTGCAGAATGGGGT-TTTGCTGACATTATAATCTCCATGAGGCCCTGGGAACGCCCCTGTACCCTCCAACACAATTCTGAGAGTTGACAGTAATCTGAACACCAGG----GTCAGTGGAAGGCAGTGAGTGGCGAGA-------GTGGTCACCAGTCAGGAGGTTGGGAGGTAGAAAGTCCCATCCTCAGGCCTGCTCAGGTTTGGGGCTGCCATGTGTGCAACAGAGAAGGG--GGATGGGAAATTTCCCCTGCTCT-CCAGGGCCCCTTTTGCCAGGCCTGGCCTGATTCCAC-----AGGGCTCAGCTGAGACAGGGGCGGGAAATGGCTGTGGGCTGTCAGCTTCACAAGGTGCTGGTGCTTGTGCCCCGGAGCCCAACACCACGGGCAAACTGTTCTAGCAGGCCCCCGATGGCACCAGAGGGACTGGGGGTTGCTGCTCGAAGTCCCACTGTGCTGCTGTATGCAGCCAAGAAGGCAGACCGCACCTCCTGCAGCCTTGTCTCCCGGTCACTCAGAGCTGTAAG s rn2.chr4 37374723 597 - 183307734 TTCAAAAAA--CTTGATTTTATTTTGTGATTAGTGTGAAATTGCCTCATTTTCAGTGCAGGTGACTCTCCTTCCCAGGAAACAAAAAGTGCAGACTGGGGTCTTTTCTGACATTATAGCCTTCACGAGGCCCTGGGAAC-CCCCTGTACCCTCCAACACAGTTCTGAGAGTTGACAGTAATCCAAAGACCAGGCAGGGTTGGTGGGAGGCAGTGA----CAAGA-------GTGGTCACCAGTCAGGAGGTTGGGAGGTAGAAAGTCCCATCCTCAGGCCTGCTCAGGTTTGGGGTTGTCATGTGTGCAACAGTGAGGGGATGGATGTGACATTTCCCCTGCTCC-ACAATGCCCCTTTTGCCAGGCATGGCTTGATTCCACCG---AGGGCTCAGCTGAGAT--GGGCAGGAAACAACCATGGGCTGTCAGCTTCACAAGGCACTGGTGCTTGTGCCCCGGAGCCCAACACCACGGGCAAATTGTTCTAGCAGGCCCCCAATGGCACCAGAGGGACTGGGGGCTGCAGCTCGAAGTCTCACTGTACTGCTGTATGCAGCCAAGAAGGCAGACCGCACCTCCTGCAGCCGTGTCTCCCTGTCACTCAGAGCTGTAAG a score=42895.000000 s hg15.chr12_random 253141 158 + 590431 CAGACAACTGTTAGGGAGCTCATCCGGGAAGCTGAAAGGGAGAGAGGAGTCTGTGTGCAGGACAGCCCGCTCCTGAATACTGCCACAGCCCGTTACCATCTGCCAGCTGCCATAGTCTGTGGAGAGAGAGGATCCGGGCAGGGGATGGTCCACTGATC s mm3.chr6 35871185 158 - 149950539 CAGACAACTGTTAGGGAGCTCATCCTGGAAGCTGAAAGGGAGAGAGGAGTCTGTGTGCAGGACAGGCCGGTCCTGAATACTGCCACAGCCCGATACCAGCTGCCAGCTGCCAAAGTCTGTGGAGAGAGAGGATCCGGGCAGGGGATGGTCCACTGATC s rn2.chr4 37378209 158 - 183307734 CAGACAACTGTTAGGGAGCTCATCCTGGAAGCTGAAAGGGAGAGAGGAGTCTGTGTGCAGGACAGGCCGTTCCTGAATACTGCCACAGCCCGATACCATCTGCCAGCTGCCAAAGTCTGTGGAGAGAGAGGATCCGGGCAGGGGATGGTCCACTGATC a score=31187.000000 s hg15.chr12_random 253299 138 + 590431 AAGCTGCCTGAGTTGGCGCTCCTGCTGGGACCAGCTCCACGGCCTCATAGGTGAAGCTCCCAGTGGCTCCTGGGGAACTCTCCATGACCAGGGAGAAGTCGCTGCCAAGGCTGGTGGTGCTGCCACGGTCCTTTCGTC s mm3.chr6 35879262 138 - 149950539 AAGCTGCCTGAGTTGGTGCTCCTGCCGGGGCAAGTTCCACAGTCTCATAGCTGAAGCTCCCCACAGCTCCCGGTGAGTGCTCCAAGACCAGGGAGAAGTCGCTGCCTAGGCTGGTTGTGCTGCCTCGATCTTTGTGTC s rn2.chr4 37385654 138 - 183307734 AAGCTGCCTGAGTTGGTGCTCCTGCCGGGACAAGTTCCACAGCCTCATAGCTGAAGCTGCCCACAGCTCCTGGTGAGTGCTCCAAGACCAGGGAGAAGTCGCTGCCTAGGCTGGTTGTGCTGCCTCGATCTCTGTGTC a score=14470.000000 s hg15.chr12_random 253437 58 + 590431 TCAGCATGCAGATGTCTTCCAGGGTGAAGCCTCCATCCCGGGCTGGCAAACTCTTCCT s mm3.chr6 35879572 58 - 149950539 TCAACATGCAGATATCTTCCACAGTGAAGCCTGCATCCCGAGTTGGCAAACTCTTCCT s rn2.chr4 37385965 58 - 183307734 TCAACATGCAGATATCTTCCACAGTGAAGCCTGCATCCCGAGTTGGCAAACTCTTCCT a score=17724.000000 s hg15.chr12_random 253495 74 + 590431 CCTCTGGGTCTTCAGAGCAGAGAACTCCTCGGAGGTAATATGCTTCAAAAAATTGAAGCAGAAGAAGAAAATCT s mm3.chr6 35880435 71 - 149950539 CCTCTGGGTCTTCAG---GCAGAACTCTTCGGAGGTGATATGCTTCAAAAAATTGAAGCAAAAGAAGAAAATCT s rn2.chr4 37386855 71 - 183307734 CCTCTGGGTCTTCAG---GCAGAACTCTTCGGAGGTGATATGCTTCAAAAAATTGAAGCAAAAGAAGAAAATCT a score=7268.000000 s hg15.chr12_random 253569 26 + 590431 CCTCCCCTTTGCTGAGCCGATCTACC s mm3.chr6 35882538 26 - 149950539 CCTCCCCTTTGCTGAGCCGATCTACC s rn2.chr4 37388970 26 - 183307734 CCTCTCCTTTGCTGAGCCGATCTACC a score=20875.000000 s hg15.chr12_random 253595 85 + 590431 AACATGTGCCCGAAGAGGAACCAGTCATAGGCCACAGTGAGGTAGAGGATCTCAGTGGGCTTCAGGGACGTGTGGATGAGCCCAT s mm3.chr6 35882786 85 - 149950539 AAGACTTACCCAAAGAGGAACCAGTCATAGGCCACAGTCAGGTAGAGGATCTCAGCAGGCTTCAGGGATGTGTGAATTAGCCCAT s rn2.chr4 37389236 85 - 183307734 AAGACTTACCCAAAGAGGAACCAGTCATAGGCCACAGTCAGGTAGAGGATCTCAGCAGGCTTCAGGGATGTGTGAATTAGCCCAT a score=25745.000000 s hg15.chr12_random 253680 165 + 590431 CAGCCCACAAGGAAAGGCGCAGGAGGGAGATGAAGAGGGGGGTCCGATCCCAGCCTGAGATACAGTGTACCAGCAGCCCGCTGTCATCATCACTGTTAACTAAGGAAAGCAG----CAGCTTCAGGTAGTTTTGTGTTTGTTGCACC---------AGATCCCAACACTGATA-------------CTGGC s mm3.chr6 35883075 167 - 149950539 CAGCCCACAAGGAAAGGCGCAGAAGAGAGATGAAGAGGGGGGTCCGGTCCCAGCCTGAGATACAGTGTACCAGCAGCCCGCTGTCATC--TATTGTGGAACAGGAGCACCAAGTGAGAGAACCAGATAGGGTTCTGCTGAAAACCCC---------AGGCCTCCAGCCTGGTG-------------CAGGC s rn2.chr4 37389567 187 - 183307734 CAGCCCACAAGGAAAGGCGTAGAAGAGAGATGAAGAGGGGGGTCCGATCCCAGCCTGAGATACAGTGTACCAGCAGCCCGTGGTCATC--TGTGGTGGAACAGGAACACCAAGT--GAGAACCAGACAGAGTTCTCCTGAAAACCCTGTCTGAGAAAGGCCTGCAGCCTGGTGCAAATGAGGCCTCCAGGC a score=17469.000000 s hg15.chr12_random 253845 66 + 590431 TCCAGTCAATGTTCAGAGAGTGAGTCAGGAAGTCGGGGATGCTCAATGGGGCATCAACGTAGTCCT s mm3.chr6 35887949 66 - 149950539 TCCAGTCAATGTTCAGAGATTGAGTCAGGAAGTTGGGGATGTTCAATGGGGCATCGACGTAGTCCT s rn2.chr4 37394303 66 - 183307734 TCCAGTCAATATTCAGAGATTGAGTCAGGAAGTCGGGGATGTTCAATGGGGCATCGACGTAGTCCT a score=20087.000000 s hg15.chr12_random 253911 74 + 590431 GCTTCCAGTTAAATATGAGCCCTTCTGCCATGTAATCCCGATCTTTATATTCCTTGAAAAATTCACAGCCTGGA s mm3.chr6 35888562 74 - 149950539 GCTTCCAGTTAAATATGAGCCCTTCAGCCATGTAATCCCGATCTTTATATTCCTTGAAGAATTCACAACCTGGA s rn2.chr4 37394875 74 - 183307734 GCTTCCAGTTAAATATGAGCCCTTCTGCCATGTAATCCCGATCTTTATATTCCTTGAAGAATTCACAGCCTGGA a score=18080.000000 s hg15.chr12_random 253985 69 + 590431 TACGGGATGGAGAGGAGAGTGAAGTCGGCATAGCGCTGGGCTTTGTCCACCTTCTCAGAGGAGGTTACA s mm3.chr6 35892127 69 - 149950539 TATGGAATAGAGAGGAGAGTGAAGTTTGCATAGCGCTGGGCTTTGTCCACCTTCTCAGAGGAGGTTACA s rn2.chr4 37399306 69 - 183307734 TATGGAATAGAAAGGAGAGTGAAGTTTGCATAGCGCTGGGCTTTGTCCACCTTCTCAGAGGAGGTTACA a score=33619.000000 s hg15.chr12_random 254054 129 + 590431 TTCATGCCAAACTTCACCTTCTTGTTCTCCACCATCAGGTCACAGATGTATTTGACTGACAGGTATCGAAGCAGCTTGATGTCATAGCCTCTGACCTTATCAAAAAGATGCGTGTCACCACTTCGAAGA s mm3.chr6 35893280 129 - 149950539 TTCATGCCAAACTTCACCTTCTTGTTCTCCACCATCAGGTCACAGATGTACTTGACTGACAGGTATTGAAGCAGCTTGATATCATAGCCTCTCACCTTATCAAAAAGGTGCGTGTCACCACTCCTGAAA s rn2.chr4 37400596 129 - 183307734 TTCATGCCAAACTTCACCTTCTTGTTCTCCACCATCAGGTCACAGATGTACTTGACTGACAGGTACTGAAGCAGCTTGATATCATAGCCTCTCACCTTATCGAAAAGGTGCGTGTCACCACTTCTGAAA a score=11877.000000 s hg15.chr12_random 254183 54 + 590431 GCACAGTCCTCCTCCGTGACGTCCTCCACATCTGCCCAGGCATCATCTGCACCC s mm3.chr6 35895152 54 - 149950539 ACAAAGTCCTCTTCTGTGACATCTTCTGTACTTGCCCAGGTATCATCTGCTCCC s rn2.chr4 37402281 54 - 183307734 ACAAAGTCCTCTTCTGTGACATCTTCTGTATTTGCCCAGGTATCATCTGCTCCC a score=15164.000000 s hg15.chr12_random 254237 68 + 590431 CCTGAGAAAAAATAGTTGTAGCCTGAGCGTCCATACAGCTCTCCCCATCCAGCGTCGACGCGGCCGGC s mm3.chr6 35895489 66 - 149950539 CCTGAGAATAAATAGTTGTATCCCGAGCGTCCATATAGCTCTCCCCATCCAGC--CAGTGTGGCCGAC s rn2.chr4 37402634 66 - 183307734 CCTGAGAAAAAATAGTTGTATCCAGAGCGTCCATACAGCTCTCCCCATCCAGC--CAGTGTGGCCGAC a score=19141.000000 s hg15.chr12_random 254319 98 + 590431 GACATCCAGCTGCTAAAGGCATACATGCGTGCAATCCGCAGTGTCAACCCCAACCTTCAGAACCTGGAGGAGACAATTGAATACAACGAGATCCTAGA s mm3.chrX 86847533 98 - 149996094 GAAATTCAGCTGATGAAGGCATATATGCGAAACATCCACAGGGTCAACCCCAACCTTCAGAACCTAGAGGAGATAATCGAGTACAATGAGATCCTCGA s rn2.chrX 67658600 97 - 133900917 AACATTCA-CTCCTGAAGGGATATATGCAAACAATCCACAGAGTCAACCCCAACCTTCAGAACCTGGAAGAGACAATCGAGTACAACAAGATCCTCAA a score=70664.000000 s hg15.chr12_random 254417 335 + 590431 GTGGGTGAACTCCCTTCAGCCAGCAAGAGTGACCCGCTGGGGAGGGATGATCTCGACTCCTGATGCTGTGCTCCAGGCTGTAATCAAGCGCTCCCTGGTGGAGAGTGGCTGTC---CTGCTTCTATTGTCAACGAGCTGATTGAAAATGCCCACGAGCGTAGCTGGCCCCAGGGTCTGGCCACACTAGAGACTAGACAGATGAACCGACGCTACTATGAGAACTACGTGGCCAAGCGCATCCCTGGCAAGCAGGCTGTTGTCGTGATGGCCTGTGAGAACCAGCACATGGGGGATGACATGGTGCAAGAGCCAGGCCTTGTCATGATATTTGCGCATG s mm3.chr10 128462729 335 + 130738012 GTGGGTGAACTCCCTGCAGCCGGCAAGGGTGACCCGCTGGGGGGGCATGATCTCCACTCCTGATGCTGTGCTCCAGGCTGTCATCAAGCGCTCCCTCGTGGAAAGTGGCTGCC---CGGCCTCCATCGTCAACGAGCTGATTGAAAATGCCCATGAACGCAGCTGGCCCCAGGGTCTGGCCACACTAGAGACAAGACAGATGAACCGGCGCTACTATGAGAACTACGTGGCCAAGCGCATCCCTGGCAAGCAGGCTGTAGTGGTGATGGCCTGTGAGAACCAGCACATGGGGGACGACATGGTGCAGGAGCCAGGGCTCGTCATGATATTTGCGCATG s rn2.chrX 67658697 322 - 133900917 GAGGGTGAACCCCCTACAGCCGGCAAGAGTGACCCACTAGGGAGGGCTGATCTCCACTCCTGACTCTGTGCTCCAGGCTGTAATCAAGTGTTTCTCTGTGGAAAGTGACTGCCACCCAGCCTCTACAGTCAATGAGCTGGTGACAAAGCCCAGTGAATGTAGCTGGCCCCAGGGTCTGACTGCACTAGAGACAAGACAGATGA----------------GAACCATGTGGCCAAGTGCATCCCTGGCAAGCAGGCTATAGTGGTGATGGCCTGTGAGAACCAGCACATGAGTGACAACATAATGCAGGAGCCAGAGCTCATCATGATATTTGTGCATG a score=105104.000000 s hg15.chr12_random 254752 1012 + 590431 GCGTGGAAGAGATATAAGAGAACTCGACTGGCTATCAGGAAGAGATGGAAATCAGAAAATCCCATCACTCCAGCAGCTGGGACCTGAGTCCTACCCACCATTTGTAATCCTGTGGATTATACGTGAGCCACACATCTCCCTGCCCTTCTGGCACTGAAGGGCCTTGGGGTAGTTTGCTCAGCCTTTCAGGTGGGAAACCCAGATTTCCTCCCTTTGCCATA----TTCCCCTAAAATGTCTATAAA-TTATCAGTCTGGGTGGGAAAGCCCCCACCTCCATCCATTTTCCTGCTTAGGGTCCC-TGGTT-CCAGTTATTTTCAGAAAGCACAAAGAGATTCAATTTCCCTGGAGGATCAGGACAGAGGAAGGAATCTCTAATCGTCCCTCTCCTCCAAAACCAGGGAATCAGAGCAGTCAGG----------------CCTGTTGACTCTAAGCAG----------------CAGA--------CATCCTGAAGAAATGGTAAGGGTGGAGCCAAATCTC--TAGAAATAAGTAGTGAGGCCGTTAATTGGCCATCACTGATGGCCCTTAGGGAAAGACTGGACCTCTG-------------------------TGCCAAGCAGTATCCCTGTTCAGC-CCACCTTAAAGGTGTAGGCACCC--------ACTGGGTCTACCA-------GTATGCAGGTTGGGATACTGAAAATTTCCAGATGAGCTCTTCTTTCCTACAAGTTTTCATAATTAGGGAATGCCAGGGTTTAGGGTAGGGGTTAATCTGTTGGGGGTTGATGTGTTTAGCAAGAAGCTACTCCTAGCTTTTGCTAAAATATGGTTGGCACTGCCTCTTGTG-GCACAGGCCATAATTGTTCCATAGACCCCTCTCTAGCCCTGTGACTGTAGTTAGTTACTTTGATAATTTTCTTTGGCCATTGTTT-GTTTATATT-------TCACAAACTCCACCTACTGCCCCCCCCCCTCTTTTTTTTA-AGAATGGCCTGATCATGGCTAT------------CTCAGCCACATTGTTGGCAATTTAATTTATTTACTTCCTTTTTTTTTTTaagaaaggaaaaaagaaaaaa-----aaatcaaacttgaaa s mm3.chr10 128463064 1005 + 130738012 GTGTGGAGGAGATATAAGAG--CGTAACTGGCTGTCAGGAAGAGGTAG-AGTTGGAAAA-CCCATTGCTCCAGCAGCTGAGCCCTGACTTCT-CCCACAGCCC-TTATGCCGCGGCTTGTACCTGAGCCACGTA-CTCCCTGCTT--CTGGCA-TGAAGGACTTTGGGGCACTTAGCTCAGCCTTTCA-GCGGAGAACCCAGATTCCTGCCTTTTGCTATATTCTTTCCCCCACAATGTCTGTAAA-TTTTCAGTCAGGGTGGAGAAATCCCCACTTCTGT--ATTTTCCTGACTAAGATCCCCTGGTTCCCAAATATTTTCAGAAAGCACAAAGAAATTTGTTTTCCCTAGAGGATCAGGGTAGAGTGAGGCATTTCTAATTGTCTATCTCTTCCAAAACCAGGGAGTCCCAGCAGGCAGGAGTCCCAGCAGGCAGGCTTGCTGAAGTCACGCAGCATTGAG--AGCTGCTCTGAGGAGCCAGCACCTGGCAGAAGGGCTGAGGGTGTGGCCCAAACCC--T----CTAACCAGTGAGGCC-------------------------------AAAGCCTGGTCCTCAC-------------------------------GC-GCATCCCTGTCCAGG-CCGCTGTGAAGGTGCAGGCCTTGATGGGTGCGCAGGGTGGCCCCTGTGAGGGTGCACAGGGTGGGTTGTTGAAATGTT---GCTGAAC---TCTTTCCTACA-CGTTTCATAATTAGG-AAGGGAAGGA--AGGGGTGGGCGTGAGAGCACTGGTGTTC-GTACACTCAGCAGGAAGCTGCTGTCTGGCTCTGCTGATCCA-GAACGGCACTGC--CTCAAGAGGGT-GTCTGTGTTGCCTCGGT-GGCCCCTCTTCAGCCCTGTGATTGCAGTTAGCT-------TGATTTCCTTTGG-TGTTGTTT-GTTTATATTTCC-AAGTCACAAACCCCATCTGTTA-----CCCAGTCTTGTTTTCATAGGATGGACTGGCTGTGTCTCTCTGATCTAG---CCCAGCCACATTGTTGGCaatttaatttatttactt--tttttttttttaaGAAAGGAGAAAAGAAAAAACAT--CAAGAAAACTTAAAA s rn2.chrX 67659355 963 - 133900917 GTGTGGAGAAGATATAAGAG--TGTAACTGGCTATCAGGAAGAGGTGG-AGTTGGAAAATCCCATTGCTCCAGCCGCTGAGCCCTGACTTC----CACAACCC-TATTGCCACAATTCGTACTTGATCCACATA-CTCCCTGCTTTTCTGGAA-TAAAGGACCTAGGGGCAATTTGCTCAGCATTTCA-GCAGGGAACCCAAATTCCTGCCTTTTGCTATATTTATTTCCC-ACCATATCTATAAAATTTTCAGTCAGGGTACAGAAATCCACACTTCTGT--ATTTTCCT----AAGATCCC-TGGTGCCCAAATATTTTCAGAAAGCACAAAGAAATTTATTTTCCCTAGAGGATCAGGGTGGAGTGAGACATTTTTAATTGGTCCTTTCTTCCAAAACCAGGGAATCTGAGCAGGCAGG----------------CTTGCTAACTCCATACAGCATTGAGTGAACAGCTCTGA--------CATCCAGCAGAAGAGCTAAGAGTATGATCAAAACCCCCT----CTAACTAGTGAGGCC-------------------------------AGGACTTGGTACTCACTAACATTCCTTGGGGAAGACCTTTCTGCTGAGC-ACATCCCTGCCCAGGTCCCCTGTGAAGGTGTAGGCCTTT-----------------CTCC-------GTGTACAGAGTGGGTTGCTGAAATGTCC--GTTGAAC---TCTTTCTTAAAATGTTTCATAATTAGGGAAGGGAAGGA--AGGAGTAGGCATTAGACCATTGATGTTCCATACACTCAGCATGAAGCTGCT----------------------------------CTTGAG-GTAT-GTCTATATTGCCTCATTAGGCCTGTCTTCAGCCCTGGGACTGTAGCTAGCT-------TGATTTACTCTGG-TGTTTTTTTGTTTATATTTCCCAAGTCATAAACCCTATCTGTTA-----CCCAGTATTGTTTTCATAAAATGGACAGGTTGCATCTGTCTTCTCCAGGAGCCTAGTCACATTGTTGGCAATTTAATTTATTTACTA--TTTTTC-----AAGAAAGGAGAAAAGAAAAAAAAAAACAACAAAACTTAAAA a score=204593.000000 s hg15.chr12_random 256039 1225 + 590431 CCCCAAAAGGGAACTTTTTTCAGTCACAAACACTGGCCCTCCAAAAGCCCCAAAAGCAAAAGCCTAGGGCCCAGAAATCCATACCCAG------TCCTTGGAGTTGGGCAGGGTAGAACCCTGGCCAAGGGCCAAGGGTGGCTTTTGTTAAGAGCCT-GAGGACTACGGGAGCAAAAATTGGGGCCTGGCCGCTCCCAATGCTGGGGGCTTGGTTTGGGGCCCCA-TCCCCTTCCTGACTGAACTCTATGAAGGACTCTTAAAAAA--ATAAAATAAAATGCAAGCAAAGGGCTTTGAAAAAAGGGAGGACACCCTATTCCTGCT--AAGGGGTAAA-GGAAAAAGGTGAAGGCGGTTAGGTGCCCATAAAAAAAGGCTGGCA--CAATCTTCATTCCCGCCAGTGTGATTTCAGTCTCAAAAGATGAGTATTTGGCTGAAAAATGGAAGGATACTCCAGGCTCCCTACGGAGTTGTGCTGGGGCCATGCTGAGCTGCCCTTGCAGGCACCCCTGGGTGCTGGGGGCAGACATGCAGGACACTGGGAAGAGTCAAACACCACAGGTGGGAGGGAAT-CTCAGAGCCCAGGCTCCCCACTGAGCTTGGCCAGCAGCTTTGAACTCCTTCAGAGGACCCTAAAAGTGAAGGAAGATGACATCCTCATTTCTACCTGAGTTGTGCTCGCACGGGAGGGACATCTGTACTCCTGTGGATGAGAAGGGGAGGCCGCATACTTGCCTCCTGTGTCCTATGGAGGAGATTTCCATCACATCCTTTCCACCCCTCCCTCCCCGGCCCTTGGGCCCAGCTCTGGCCAGGAAAAGTGGGGAGGCCGTAAAGGAGAAAGACCATGCCTTTCATTTTCTTCCTATGTCCTTATCGTCCATACATCCCAAATACTAGGAAGCTGAAGAAGACGGTGACTCCCACCAGGGAGACAGTGGCAGGTGCTGTGAAGAATTGGCGGTAATTGATTCGGAAGTACCAGACCACACCCAACAGCACCACAAAGACAGGCACCATGAGGCTGCCCACATTGACACCAAGGCTGGGTGGCTCAGTGGCCGAGGGGGCCAAGGAGGCTGAGGGGCCTGGAACAGCTGACCCTGGGGGTGAGCGGTGGCAGTGAATCACACAGTTGTCGGTAATGTTCAGAGAACGCAGTGTGCGGGCTGGGTCTTGTAGCAGGCGGCCCTGGTAGATCAGTTTCATCTGGCTTTCTTGTCCAGGGAAGTATTTG--------------- s mm3.chr11 19729708 1173 - 122862689 CCACAAAATGGATTTTTATTCATTC----ATACTGACCATC---------------TAAGGGCTTAGGGGAGGGCAGTCTATACCCAGAGCTCATCCTTGGAACTGGGCAGGGCA-----CTGGATTAGGGCCAG----TACTCTTGC----AGTCTAGAGGCCTAGGATAACAGCAGCTGTGGCCTGGC----CTCAATGCTGGGGGCTTGGCCTTCTGCCCCACTCCCCTTCCTGACTGAGCTCTATACAGGACTATTTACAAACAAACAAAAAAAGAGCAAGCAAAGTGCTTTAAAAGAAAGCAAAATATCCTATTCCTGCTACAAGGGGCACA-AGGAGGAGGTGGTGGCAGCTGGGTGCT--GTAGGGAAGGCTGGCTGGCAGTCTTCATCCC------TGTGAATTTAGTTTCAAAAGGTCCACACTCATCTAAGGAGTGGAAGG-TACTTGAGGCTTCCTACAGAAGTATGCTAAGGCCATGCTGAGCTGTCCTGGCAGCAACCCTGGGGGTTAGGGAACAGACATGCAAGAGACTGGGC------------CACAGCCAGGAGGGAAGACCCAGAGCCCAGGCTTCTCACTGATCTTGGC------CTGTGAACTTT-----GGGATTCCAAAA--GAGGGAAGATGATATCCTCATTTCTACCTGAGTTGTGCTTGC-----AGAGATATCTGTAC-CCTCTGGACATGAA-GGGAGGCCACACACCTGCTTCCTGGGTCCTATGGACAGGGTACCCACCATACCCTTCCTATCCCTCCCTCCCAGGTCCTTGGGCCCAGCTCTGGCCAGGAAAGG-AGGGAGGCCACGAAGGAGGAAGACCATGCCTTTCTTTGTCTCCTGATGTCCTTATCTTCCATACATCCCAAATACCAGGATGCTGAAGAAGACTGTGACTCCAACCAAGGAGATAGTGGCAGGTCCAGTGAAGAACTGGCGGTAATTGATACGGAAGTACCAGACCACACCCAAGAGCACCACAAACACAGGCACCATGAGGCTGCCCACGTTGACACCAAGGCTAGATTGCTCAGTGGTT---GGGGTCAAGGAGGCTGAGGGGCCAGAAACTGCTGCCCCTGGGGGTGAGCGGTGGCAGTGGATCACGCAGTTGTTGGTAATGTTCAGGGAACTCAGTGTGCGTGCTGGGTCCTGCAGCAGCCGACCCTGGTAGATCAACTTCATTTGGCTCTCTTGTCCAGGGAAGTATTT-CTACAAGGATGAGAA s rn2.chr10 19345907 1130 - 106208427 CCACAAAATGGAATTTTATTCATTC----ATATTGACCATC---------------TAAGGGCCTAGGGGAGGGCAATCTATACCTAGAACTCATCCTCGGAATTGGGCAGGGCA-----CTGGATTAGGGCCAG----CACTCTGGC----AGTCC-TAGGCCTAGGTTAGCAGCAGCTG------------------------GGGCTTGGCCTTCTGCCCCAATCCCCTTCCTGACTGAGCTCTATACAGGACTATTTAGAAA--------AGAAGGGCAAGCAAAGTGCTTTAAAAGAAAGCAAAATATCCTATTCCTGCTACAAGGGACACACACAAGGAGGTGGTGGCAGCTGGATGCT--ATAGGTAAGACTG-----CAGTCTTCATCCC------TGTGACTTTAGTTTCCAAAGGTCCACACTC---TAAGGAGTGGAAGG-TACTTCAGACTCCCTATAGAGGTATGCTACGGCCATGCTGAGCTGCCCTGGCAGCAACCCTGGGGGTTTGTGAACAGACATGCAAGACACTGGGCTAGG------GCCACAGCCAGGAGGGAAGGCCCAGTGCCCAGGCTTCT----GAGCTTGGC------CTTTGAACATT-----GGGATTCCAA----GAGGGAAGATGATGTCCTTGTTTCTACCTGAGTTGTGCTTGC-----AGAGATATCTGTAC-CCTATGGACATGAA-GGGAGGCCATACACCT----CCTGGGTCCTATGGACAGGGTACCCACCATACCTTTCCCATCCCTCCC----AGGTCCTTGGGCCCAGCTCTGGCCAGGAAAGG-GGGGAGGCCAAGAAGGAGGACGACCATGCCTTTCTATGTCTCCCGATGTCCTTATCTTCCATACATCCCAAATACTAGGAAGCTGAAGAAGACTGTGACTCCAACCAAGGAGACAGTGGCAGGTGCTGTGAAGAACTGGCGGTAATTGATACGGAAGTACCAGACCACACCCAAGAGCACCACAAACACCGGCACCATGAGGCTGCCCACGTTGACACCAAGGCTGGATTGCTCAGTGGTT---GGGGTCAAGGAGGTTGAGGGGCCAGAAACTGCTGCCCCTGGGGGTGAGCGGTGGCAGTGAATCACGCAGTTGTTGGTAATGTTCAGGGAACTCAGCGTGCGTGCTGGGTCCTGCAGCAGCCGACCCTGGTAGATCAATTTCATCTGGCTCTCTTGTCCAGGGAAGTACTTGCTACAAGGATGAAAA a score=127137.000000 s hg15.chr12_random 257264 615 + 590431 ---------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCAGGGCACCCACGGTATCCTCTGGCCTAGCCACAGCCAGCTCCTCGGTATCATTGAGGAATTTGAGCCGCACAGTGATGAGGCCAGGGCTGGGAGGGAGGCAGGTGCTATCCTCAGATCTCAGGGGGGCCTCTGGACTGCTGCTGCCTGCACCTGCTTGT----------------------------------------------------------------------------------------------------------------------------CCTCTGATGGATGGGGGAGTTCAGTTGGCTCGGGGTTGCCTTGGCCTGCCACCAGGTGGTCCACATGCCCCAGGTGGAGGACGGATGTGTCGCCTGCTGACACAATAGCGCCCAGGAGCTGGTTGCTACCGCTGTCTGCTACGTAGGTAGAGAGCCAAGCTAGGACCAAGGCTAGAATCAGCACCACCACACCTGCCACCACCATCACCTCATTACCCACACCCTCAATGAGGGTGACATCAGAGAGCTCCATGGCCTGGCTGCTGGCAGGGTCCACGCTGCAGGAACAAAGGGGGACAGCATCAGCAGAGCCTGAGGGGTTGCAACCAGGTCTCTAGTTTGTTTAGGTTCTAA--CTGACCCAGCCC---------TGAAAAAAAAAAAAAAGGA-------------GTTCAGTGTTGTGTAGAAGGGGGCACAAACC---TTCCTAATTCCGGCA---CCCCAACCTAAACCTAAAG s mm3.chr11 19730981 894 - 122862689 TCTGTCTATGGAAGTCTCC-ATTT-----------------ACCCTTAAAATCCCTCCTGTGCTCACATATATGCAC-AGCTTGTTCACGCAAACCATCATCTGAGGAACAAGTCACGAGCAACTGGCCTCTCTCCGGCCTACTCACCTTTTTAGGGTACCCACAGTGTCCTCTGGCCTGGCCACAGCTAGCTCCTCGGTGTCATTGAGGAACTTGAGGCGAACATTGATGAGGCTGGGGCTGGGAGAGAGGCAGGAGCCATCATCTAACCCCAGCGGGGCTTCTGGGCGACTGCTCCCCAGGCCTGCTTGCCTTTTAGGCAGGCCTTGGATGTCCAGGAGATGCTCCAGGCTGGGCTCCATCTCTCCCCTAGCTCCAGGTTCTCCAGTGGCGTCTCCCCCACTGTCACTGGTCTCTTCAGCCTTGTCATCATTGCCCCCTGATGGATGGGGGTGTTCGGTTGGCTCTGGAGTGCCTTGGTTT---ACCAGCTGGTCCACATGGCCCAGGTGGAGAACAGACGTGTCACCTGCTGACACAATGGTGCCCAGCAGCTGGTTGTTACCACTGTCTGCTACATAGGTGGAGAGCCAGGCTAGGACCAGGGCTAGAGTCAGCGCCACCACGCCTGCTACCACCATCACCTCGTTACCCACACCCTCAATGAGGGTGACATCAGAGAGCTCCATGGCCTGGCTGCTGACTGGGTCCACGCTGCAGGAACAAAGGGGGATAGCATTAGGAGGGCCTGAGGGCTTATAGTCAGGTTTCTACTTTGTTTAGGTTCTGAGGCAGGCTGGGGTTaaaaaaaaaagaaaaaaaaaaaaaaggaaaaaaGGATGGGGGCTTGGTGTTGTGTAGGAAGGGCAGCCAGCCAATTTCCTAACAGTAGTAGACCCTCAATCTCAAGCTAAGG s rn2.chr10 19347110 895 - 106208427 TCTGTCTATGGAATTCTCCCATTTCCTCTTTGCAGAGGCCAGCCCTTAAAGTTCTTCATTTGCTCACATATATGCACCAACTTCTTCAGGGAAACCAACACCTGAGGCACAAGTCATTAGCAACTGCCCTCTTTCCAGCCTACTCACCTTTTTAGAGTACCCACAGTGTCCTCTGGCCTGGCCACAGCTAGCTCCTCAGTGTCATTGAGGAATTTGAGCCGAACATTGATGAGGCTAGGGCTGGGAGAGAGGCAGGTGCTATCATCTAATCCCAGTGAAGCTTCCGGGCGACTGCTCTCCAGGCCTGCTTGTCGCTTAGGCAGGCCTTGGATGTCAAGGAGATGCTCAAGACTGGGCTCCATGTCTCCCCTAGCTCCAGGTTCTCCAGTGGTGTCTCCCCCACTGTCACTGGTCTCTTCAGCTTTATCATCACTGCCCCCTGATGGATGGGGGTGTTCAGTCGGCTCTGGAGTACCTTGGTTT---ACCAGCTGGTCCACATGCCCCAGGTGGAGAACCGATGTGTCACCTGCTGACACGATGGTGCCCAGCAGCTGGCTGTTACTGCTGTCTGCTACATAGGTAGAAAGCCAGGCTAGGACCAAGGCTAGAGTCAGCACCACCACACCTGCCACCACCATCACCTCGTTACCCACACCCTCAATGAGGGTGACATCAGAGAGCTCCATGGCTTGGCTGCTGACCGGGTCCACGCTGCAGGAACAAAGGGGGACAGCATCAGCAGAGCCCCAAGAATTAGAACCAGGTTTCTAGTTTATTTTGGTTCTGAGGCAGGCTGGGGTT-----------------AAAGCAAAGGAAAAAAAGATGGGGTTTTGGTATTATGTAGGAAGGACAGCCAGCCAATCTCCTAACAGTAGCAGACCCTCAATCTCAAGTTAAA- a score=201327.000000 s hg15.chr12_random 257924 1657 + 590431 tGCTGTGTTTCCACTTTATTAAATCATCACAGTAAATCAGAATTAAAGAGTAAAAGAGGTTAACTGGAGAGTCGGGTGGCTGCCATCAGTGGAGATGTGTGCTTTCTCGGTGTGGCTGCCTGGGCCGCGGTGTG--------TCCTGGTGCAC----ACACGTCT-----------GCAAGGTG-------------TTCCCACCACCTAGGAAGGAACCTAGATGTGGAGCATTAGGAAAATTAAATAACAAGAGACAGCAAAATAAGAATCAAATGACACGC--TATAACTTAATTTACCATATTTATCAAATTTTTTCCTTATTTACATGTACTAAACATTGTAGACCTGAAAACATAAGGAAACATTCACTTCATGTGTATGTCATATGGACAG-ACTGAGTGCAACTAAAACGATGGTTGTTTCATGTTGAATTTCCCTCGGATGCAGACGCTGCCCTTCAGTAGATATAAAGGTAGCACAGTTACATTTACGACATCACAGTTAGGTTTTAAAGGATTCATCAGACCTCCACATGACACCGATACAGCAGGTCCATGGGGCGCAGGTGGTGCCACCTGAGGAAGGTCAGGAAGACAGGATGTGCATGGCTCTGTGGATCTGCATGAGCTCTTGCTTGTAAGGCTGAGGGTCTGATCAATCAACCTATGTCACCAAGTTTGGGTCACCCCACTTCCCCA-ACATGTGGCTCTTAGGAACCGCAGACTTTGTTGCTGAGGCAAC---------------CCAGGCTAAATTTCTTCACTTCTGTCTGCTGAAGGC----TTATTTTTAAAAAGTCATAAT-----------------------------------TTTTTAAAGTACGAAAGCCTAAGTACAATGAGACGATAAACATCAGCTTTGCTCTGGATGGA-ATCTGGGAATAGGTGTGCAGAGAAGTGAGGGAACTGGCCTGGCCCTGCCTGAGGCCAGCGAGTCTTACCACATTTTGGCCCAATTAGGGCCACTTCTGTTTCCAGATGGCTGACCTACTGGTACCACCGTGATGAGTCAGCGCTGTGCCTCAGGTGGGGCCCTAGTGGATGAATGATCCTCCGCAATTTTGCTGAAAGGGATTTATTACAAAAACACAATATTTGCTTTTCTAAGTAAAAAAAAAATAAAAAAGAAACTTGATCATTGCAATTTTCCACCCCAGATAACAAAAACAACTCCAGTCCACGTGATCACGAGAAACGTGGCTGTCAGATTCCCTGCTC-CACGTTCC---ATCTCCAGACCAAAGCTGCT----ACTGA-----------------GAATGGCAGGCTCAAAAAACTCTAGTCACCAAACTGCTGGCTGTCATCGGGGGTCATGGGGTCGTTATAATCCTCAGGGGTTACAGGAGGGTTGAGTTATTTGCTGCCTACAATTGAATTTCCCACCCCAAGGTAGGGATCGCTGGTTCGTGAAAGCAAAATGAAATCATGGAGCAGAAGTCCAGGAGAGTTCAATACGATTTCTAAATCCTGACATA-----------TCTTTT---------------------------CTACTAAA--GCCAGCAATTCCGCAACAGGAGTTTCTAGAGCCTGAAGATGAAACGTTCTCCCAGAGGCGACCTGCTGGTAGAGACCTACAGGGGACTCTGGAGCCTAGGAGCATGCGATGGCCTTCCCAACAGGAGTGAGGT-------------AAACAGGAGACAGGAGCAGCTCAACAGCAGGATCAAGCCTGAGTGATGGTGGCCA-------------------------------------------------------------------------------------AGCTATGCTGCC-------CAGATGTCTGGAATCATTTA s mm3.chr2 147947570 1783 + 181423755 TGCCGTGTTTCTCACCCTTCAACTCATCACGGTCAATCAGAACGAAAAAG-------AGCGAGCTG--GAGTTGAGTGGC-ACCATTA-TGGAGCTAAGTGTTTTCCCAGCATGGCTGCCT---TTATGGAGTG-----TGTCCCTAGTGCACATGTACACTCCTGACAAGGGGGAGCAGGTTTGGAGGTTCACCCAACCACACGCCCCTCAGAACAACTTAGTTATGCAGCTCTGGGAAG-TTAAATAACAAGAGACCTCAGAAC---AATCAAATGACATGC--TATAACTTAATTTATCATCTCGATCAAA-TGTCTCCCTATTTACACATACTAAATATTGTAGACCTGAAA--CTAAGGAAATGTTTGCTTACCGAGTACGTCATATACATAGAACTGGGTGCAAATACAAGTATGGGTGTCTCTGGGTGAGTTTCCCTTAGATGT-GACA-TCCCCTTCAGGAAGTATGGA-GTGATACAGCTACATGTAAGACA-CACAGGAAGG-TTTAGTGAGTTCATCAAACCTCC-------------ACCACAGGTCAGTGGAGAAAAGGAAGGGACACCTGAGGACAGTCAGGAAGACAGGGTTTGCATGGCTCTCTGGAGCTGTGTGATCTC---CTTATAAGGCTAAGGGTCCTACTAAACAG--CATTTGGCAGAGTCAGGGT------------TCATTCCTGGGGCTCTCAAGATCTGCCAGTGTGGCTGCTGAGGACTCTG--GGAGTCACTCACCAGGCTACATTTCTTTTCTTCAGTCTGCTGAAGGTCTGGCTATTTTTAAAACATCCAAGTTTTGTGGGGTTACttttttatttttatttttttaatttttaCAGCATGAAAGTCTA--ATCAACAAGACTATAAACATCAGTTTCCCTCTTTATAGACATTGGGAGGTCAGCATGTAGAGAAGGGTGGGTTCTGGCCAGGCCCTGCAGGAGCCCAGAGAGTCTTACCACACTTTGTGGTAATTAGGGACACTTTTA-TCACAGATGGCTGACCTACTAATACTAATGTGACAAG-------TGGCTCTCTGG-AGGGTCTCACCAGATGAGTGACCCTTAGCAATTTTGCTAAAAGACATTTATTATGAAAACACAATATTTGCTTTTCTAACTGACAAAAGG--AAACACCAAACTTGATCATTTCAATTTTCTACCCTAAATAACAAGAGCTGCT-GAATGCA----ATC-----AAAGATGGTTGCCAGAATCCCTACTCTCCAGCTCTTAGGTCTCTA-ACCAGAGTTATT----ACCAACCCAAGACCCATGGACTAAATAAATAACTAAAACATAAACAGGCA-TAAACTGTT-GCTGTCAACCTGGG-TATGGGGTTGGTAAAATCATTAGGT--TACAAGAAGTTCAAATTATTTGCTACCTCCAATTGAATTTCTCACTCCAAGTCTGAG------GGCTTGTGGAAGC-AAATGAAATTATGAAG-AGACATCTGT--GAGTTAAACAGGACCTCTGGGACCTGGGTTGTGGCCCTGGGTTCTGTTACGACTGAAAAAGAAGAAAATGAAAGACTTCCAAAATGGCAGGAATTTCACCACAGGGGTTTATGGGGCCTGAAGAT-AAGTGTTCCTGCAGAAGGTACTTTATGACCT-GTGCTGCGGGGGCCTTTAGTGCCCAGGA-CTTGGGAAGCGCTTTCT-GCAGGAGCCAGGT-----------------------AAGTAACAAATCAATAATAG----AAGTCTGAGCAATATTGGCcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaGAGagagagagagagagacagacagacagacagacagacagacacacagacacacaga s rn2.chr3 110535006 1749 + 165924081 TGCTGTGTTTCTCATTCATCGAATCATCACAGTAAATCAGAACGAAAAAG-------AGTGAGCTG--GAGTTGAGTGGC-ACCATTA-TGGAGCTAAGAGTTTTCCAAGCAGGGCTGCCT---TTGTGGAGTGTACCATGTCCCTGGTGTACATGTACACTCCTGACAAGGGGGAGCAG-----------------ATCACACACCCCTCAGAACAACCTAGATGTGCAGCATTGGGAAG------TAACAAGAGACCGCAAAAC---AATCAAATGACATGCTATATAACTTAATTCAACATCTCTATCAAA-TTGCCCCCTATTTACACATACTACATACTGTAGACCTGACA--CTAAGGAAATGCTTGCTTACTGTGTACATCACATACATAGCA-----------------TCTGGGCATCTCTTGATGAGTTTCCCTTAGATGC-GACA-TCCCCTTCAGTAAGTATGGA-GTGATACAGCTACATATAAGACA-CAGAGGAAGG-TTTAGAGGGCTCATCAAACCTCC-------------ACCACAGGTCAGTGGAGGAAAGGAAGGGACACCTGAGGACGGTCAGGAAGACAGGGTTTGCATGGCTCTCTGGAGCTGTG--------------TAAGGCTAAGGGTCCTACTAAACAG-CCACACTGCAGAGTCAGAGT------------CCA-TCCCGGGGCTCTCAGGAAATGCCTGCTTGGCTGCTGAAGACACTGTAAGAGTCACTCACCAGGCTGCACTTCCTTTCTTCAGTCTGCTGCAGGTCTGGCTATTTTTAAAAAGTCCTAATTTTGTGGGGTTAC----TAATTTTT----------TTTTTACAGCATGAAAGTCTA--TACAATAAGACTATAAACATCAGTTTCCTTCTTCATGGACATCCAGAAATCAGCATGTGGAGAAGGGTA----CTGGCCAGACCCTGCATGAGCCCAAAGAATCTTACCACACTTTGGGGTAATTAGGGACACTTTTA-TCACAGATGGCTGACCTACTAATACTAGCGTGACGAG-------TGTCTCTCAGG-AGGGTCTCACCAGATGAGTGACCCTTAGTAATTTTGTTAAAAGACATTTATTATGAAAACACAATGTTTGCTTTTCTAACTGACAAAAGG--AAACACCAAACTTGATCATTTCAATTTTCCACCCCAAATAACAAGAGCTGCT-AAGTCTA----ATC-----AAGCATGGTTGCCAGAGTCCCTACTC-CCAGCTCTTAGGTCTCTA-ACCAGAGCTATTACCAACCAACCCAAGACCCATGGACTAAACAGATAAGTAAAACAGAAACAGACA-TGAACTGTT-GCTGTCAACCTGGG-CATGGGGTTGATAAAATCATTAGGG--TACAAGAAGTTCAAATTATTTGCTACCTCCAATTGAATTTCTCACTCCGAGTCTGAG------GGCTTGTGGAAGC-AAATGACATTATGAAG-AGACAGCTGTGGGAGTGAGACAGGACCTCTGGGACCTGGGTTGTGGCCCTGGGTTCTGTTATGACTGAAAAAGACAAAAGTGAAAGACTTCCAAAATGACAAGAATTCCACAACA-GTGTTCATGGGGCCTGAAGGT-AAGTGTTCCCACAGAAGCTACTCAATGACCGAGTACTGCAGGGGCCTTTGGTGCCCAGGA-CTTGGGAGGTGCTTTCT-GCAGGAGCCAGGTCTGGGTGCTTTGTAAACA--CCAAAGTAGGAGATCAATAACAG----AAGTCTGAGC-ACACAGGCcacacacacacagacacacacacacacggagacacacacacacacacatacacgcacacacagagacatggacagacacacacacacacggacacagacacacacacagatacacgcacacacaga a score=24329.000000 s hg15.chr12_random 259581 252 + 590431 AAATAAAGGGGCATTTGCTGACACCACAGAAAATGCCAGGACTTGCAGTCACTCTTCACATTGCCCTTCAGCCCCCG-----TGAGTATCCTGGGCCCTTCCCAAAACGG--CCCAGGGGCCAGAAGCTTCCTTCCACTTTGGGGCACCCT-CATTCTCT--TGTGTTCAGGTGGTTCTCAAGGTGCTCCTGTCAGTGGGCCTGGCCTGC----------AATCCCCTATAAAGCAGAAAAGCAAATTCTCGCCAGGATGAGCAGGCCCGCC s mm3.chr2 147949353 246 + 181423755 TAAGAATCAAGGTTTCACTGACACAATGGGAAATGTCATGACAGCCGATTTCCCTTC-TATCACCATCAACCTCCAA-TAAGTGAACATCCTGGACCCTA-AGAAGACAGCACACAGGG-------CCCCTTTTCTGCTTTGCAATGCCCTGCTCTCTCT--GACCGT--------------GGTGCTTCTGTCTGTGGGCCTGGCATGAGAGGCTGCTGTATTCCCTTCACAGCAGGAGGACGGGGTCTCCCTGCAGTGGGAAGGTGCTCC s rn2.chr3 110537001 270 + 165924081 TAAGAATCAAGGTTTCACTGACACAATGGAAAACGTCATGACAGGCGATTTCCCTTC-TATCACCATTAAGCTCCCACTAAGTGAGTATTCTGGACCTTT-AGGAAACAGCACACAGGGAATAGAGCCTTTCTTCTACTTTGCAATGTCCTGCTCTCTCTATGATCTTCAAGCAGCTCTCCAGGGGCTCCTGTCTGTGGGTCTGGGATGAGAGGCTGTTGAACTCCCTTCAAAGCAGCAGGCTGGATTCTCCCTGCAGTGGGATGGTGCTCC a score=85724.000000 s hg15.chr12_random 260044 894 + 590431 ACAAAGAAAATTCTAGAAAGCCAGGGGTGAAAAAG-----CTCTCCTTTCTCAGACGATTCTGTTAAGTCTATGTGGGCTAAGGAGAGAAGAAC-AAAAGTTTCTCTGGGCCTTGGCCTCTTGGGGATCCCTTCTC-TCATTTTCTAAA--AACTGTTTCTCACACCAGGCTAAGGAGGTGGTGGGGAAGGTCTCCCTTCCCCTGCCCACCTCAGACAGTTCTAGGGAGATGGAGGTTTCACCACTTGGCCACTAGTCTCAAATAACTGGAAGGTTCCTTTTTTCCTGAGGTCATGAAATGTTCTGGAACCACAGCGCCCCCGCCAGCCCTCCGTGGGAGCACAGAGGGGCAGGCCTTGATTGGTCTTCTCACCCTACAGCCACTTTTTTGGCCCAACTCTCGAGCAAGCCTTCATCACCATCAGGGTCTCATGGGCAGTCTGGGTTTGCCAGCCCAGTCCTTGAACTTGGAGAG-GGAGGTGGGGCTTGGAAATGCCTTGTCCCCAGGGTGGGGGGGACACCTTGTCCTTGGAGCTGGCTGAGCCCTGT----GCCCATGGC-TGGGTTCAGTTTGCAGGTATAGCTGTAGCACTCTTTGCTGGTGGGAATGGAGAGGTCTCGCTGGCCTTCTTTGCCTTTTTC------TTCTTTTTGGTCCCAAGCGACACCTGGTCCCCGTTGAGCTCACCTGACT------TCTGCTTCTGGACTGTGGCCATGCTGGTGGGGGTGGTGGCAGCGACAGCCGAGTCGAC---ACTGGCCACCTTCTTGGCTTTCTTTTTCAACTTCCTTTTCTTCTTTGCCTCCTTCTCCACTGTTCCAGGGCTGTGGATGGCTGACTCCTGTAGGATGTCGGACGCCGACACAGCTGCCTCCCGGCACCGCCGCCACTCCTCGTCACTGTCCTCACTG s mm3.chr5 37542644 716 - 149719773 ACAGACAAATGTGGGGAGAGGAGGAGGTGGGGGAGACCTTCCCTTCTTTTCCAGACAATGTTCTTAAGTC----------TGGGGGAGAGGTACTAAAATTTTTCTGGGGCCTCGGCAGCTTGGAGACCCCTGCCCATCATTCTCTAGGACAACTG----TCATGCAAGGCTGCACAGG------------------------------------------CTGGGGAGATGGATGCTCTGAGATT-------CAGTC-CAAA-AGCTGG-------------------------GGAACGTTCTGGAACCACAA-ATCTATTCCAGGCCT-------------------------------------CTCCTCATACACCCACTCCATTGCTTGGACTCTTGGCCAAGCC-----CACCTAAAGTCACCC-TGGGCAGT---------------CATTGTGGGAAGCTGGAAACTGGGAGTGTGGCTTGGCTCTGCCCTAACTCCA--------TGGGCACCTGATCCTCAGGGCTGG---------------ACCTACAGCTTGGGGTCAGTTCTCAGGCTTCGCCGCTGCACACTCTGCTGGTGGGCACAGGGGAGCCTCTCTGGATTTCTTGGCCTTCTTCTTTTTCTTCTTTTGGATCCCAAGCGACACCGGGTCCCCATTGACAACGCCTGCCTCCTTTACCTGTTCCAGACCTGGGGCT------------------------GCAGCCAGGTCAGCATTGTCCACCTTCTTCTTGGCTTTCTTTTTCAACTTC---TTCTTCTC---------CTCTGCCTTGGCAGGGCAGTGTATGGCTGACTCCTGGAGAATGTCTGAAGCCGACACAGCTGCCTCCCGGCACCGCTGCAGTTCCTCATCGCTGTCCTCACTG s rn2.chr12 43739660 777 + 46874691 ACACACAAATGTGGGG-GAGAAGGAGGTGGGGGATATCTTTCCTTCTCTTCCAGACAATGCTATTAAGTCTGTATGGG-TTGGGGGGGAGGTAC-AGAAGTTTTCTGGGGCCTCAGTAGCTTGAAGACCCCTCCCCATCATTCTCGAAGACAACTG----TCATCCGAGGCTGCACAGG------------------------------------------TCGGGAAGATGGATGCTGTGAGATT-------CAGTCTCAAA-AGCTGGAAGAGT-CGTACTTCCTGAGGCGATGGAATGTTCTGGAACCACAA-GTCCATTCCAGCCTT--------GCACAGA------------------CTTCCCCCCCATATACCCACTCCTTTGCTTGCACTCTTGGGCAAGCC-----CAACTAAAGTCACCTGCGGGCAGT---------------CAGTGCGGGAAGCTGGAAAC--GGAGTGTGGCTTGGCTCTGCCCTAACCCCC--------TGGGTTAGT-ATCCTCAGAGCTGG-TGACCTCAGGACCTACCTACAGCCTGCAGTCAGTTCTTAGGCTCAGCCGCTGCACACTCTGCTGGTGGGCACAGGGAAGCCTCTCTAGCTTTCTTGGCCTTTTTCTTCTTTTTCTTTTTGGTCCCAGACAACACTGGGTCCCCATTGACGCTACCCGCCTCCTTTACCTGTTCCAGACCTGTGGCT------------------------GCAGCCAGGTCAGC---GTCTGccttcttcttggctttctttttcaacttc---ttcttctcggcctccttctcGACCTTGGCAGGGCAGTGTATGGCTGACTCCTGGAGAATATCTGAAGCGGACACAGCTGCCTCCCGGCACCGCTGCAATTCCTCGTCACTGTCCTCACTG a score=21626.000000 s hg15.chr12_random 260938 92 + 590431 CTGGAGCTGGAGGGCTGTCGCTTTCGGCGGGGTTGGGGAGACTCTTCCTTCTCACGGCCTCCAGGGACAGATGTGAAGAAAAGGCGGAAACC s mm3.chr5 37543785 92 - 149719773 CTGGAGCTGGGGGGCTGGCGCTTCCGGCAGGGTCTTGGAGAGGCTTCCTTCTTATGGCCTCCGGGGATGGATGTGAAGAAAAGGCGGAAGCC s rn2.chr12 43740818 92 + 46874691 CTGGAGCTGGGGGGCTGGCGCTTTCGGCAGGGTCTTGGAGAAGCTTCCTTTTCATGGCCTCCGGGGACAGATGTGAAGAAAAGGCGGAAGCC a score=5339.000000 s hg15.chr12_random 261030 73 + 590431 ATC---------------------ATCCTCCAAAGCGACTTTCTGTACCTTAG-CTTTTGCT-----------------------------------GGCTCCTTTGCTGCTTCTGAGATGGTAATGAAG s mm3.chr5 37544675 73 - 149719773 ATC---------------------CTCCTCCTTTGCCACCTGCTGCATCTTTGCCTTTTGC------------------------------------GACTTCTTCCAAACTTCTGCGATGGCAATGGAG s rn2.chr12 43741622 130 + 46874691 GtcttcctccttcttggctgcctgctcctccttggccgcctgctgctccttggcctcctgctgctccttggcctcctgctGCAACCTGGCCTGCTGGGTCTTCTTCCATACTTCTGCGATAGCAATGGAG a score=24170.000000 s hg15.chr12_random 261103 101 + 590431 CTGTCCAGCAGGGCTCCCAGCTTCTTGGCTACGTGGGCTCGGAATTCAGGGGTGGTCTGAAGCTCGTTGCCATCTTGTTCATGCTCATTCACCTTATGCCT s mm3.chr5 37544922 101 - 149719773 CTGTCCAGCAGGGCTCCCAGTTTCTTGGCCACGTGGGCTCGGAACTCAGGAGTGGTCCGAAGGTCGTTGCCATCTTCCTCGTGCTGGTTCACCTCATGCCT s rn2.chr12 43741933 101 + 46874691 CTGTCCAGCAGTGCTCCCAGTTTCTTGGCCACGTAGGCTCGGAACTCAGGAGTGGTCTGAAGTTCGTTGCCATCTTCATCATGCTGGTTCACCTCACGCCT a score=29035.000000 s hg15.chr12_random 261243 148 + 590431 ACCGGCTCTTGGCTTCCCTGCCACGTGCGGGCGTTGCTCCAAGCCCCAAGCCGGCATTGCCGCCTCGCGGCACCGCTCCAGCTCCTCCGCATCGCTACTG---CTGTTACTACTTTCCGAATCGCTCACAGTGCCACTGGGCGCCGCCGTC s mm3.chr5 37548681 151 - 149719773 ACCGGCTTCGGGTCTCTCCGCTGCCCCCGGGCGCTGCTCCAGCCCCCAGGCGGGCGTAGCCGCCTCGCGACAGCGTGCCAATTCCTCCGCATCGCTGCTGCTACTGCTGCTGTTCTCCGAATCGCTCATTGCACCGCTGGGCGCCACCATC s rn2.chr12 43744956 151 + 46874691 ACCGGCTGCGGGTCTCTCCGCTTCCCGCGGGCGCTGCTCCAGCCCCCAGGCGGGCGTTGCCGCCTCGCGGCACCGCGCCAACTCCTCGGCATCGCTGCTGTCACTGCTGCTGCTCTCCGAGTCGCTCATGGCACCGCTGGGTGCTACCATC a score=9836.000000 s hg15.chr12_random 261409 36 + 590431 AAATTTTTATCAAAGTTAATGGATCAGTTAGAAGCT s mm3.chr10 116327320 36 - 130738012 AAATTTTTATCAAAGCTAATGGATCAGTTAGAAGCT s rn2.chr1 266435225 36 - 276301343 AAATTTTTATCAAAGCTAATGGATCAGTTAGAAGCT a score=31398.000000 s hg15.chr12_random 261445 128 + 590431 CTAAAGAAGCAGTTGGGTGATAATGAAGCTATTACTCAAGAAATAGTGGGCTGTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTGTATGCAGACAATGAAGATCGTGCTGGACGATTTCACAA s mm3.chr10 116329961 128 - 130738012 CTTAAAAAACAGTTGGGGGATAATGAAGCTGTTACTCAAGAAATAGTTGGTTGTGCCCATTTGGAAAATTATGCTTTGAAAATGTTCTTGTATGCAGACAATGAAGATCGAGCTGGACGATTTCACAA s rn2.chr1 266438078 128 - 276301343 CTTAAGAAACAGTTGGGGGATAATGAAGCTGTTACTCAAGAAATCGTTGGTTGTGCCCATTTGGAAAATTATGCTTTGAAAATGTTCCTGTACGCGGACAACGAAGACCGAGCTGGACGATTTCACAA a score=18459.000000 s hg15.chr12_random 261573 76 + 590431 AAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTGATAGATGTCATAACAGTATTTGGAGAACTCACTGATGAA s mm3.chr10 116330830 76 - 130738012 AAACATGATCAAGTCCTTCTACACTGCCAGCCTTTTAATAGATGTCATCACAGTGTTTGGTGAACTCACAGATGAA s rn2.chr1 266438885 76 - 276301343 AAACATGATCAAGTCCTTCTACACTGCCAGCCTTTTAATAGATGTCATCACAGTGTTTGGCGAGCTCACAGATGAA a score=11740.000000 s hg15.chr12_random 261649 50 + 590431 AATGTGAAACACAGGAAGTATGCCAGATGGAAGGCAACATACATTGATGA s mm3.chr10 116338922 50 - 130738012 AATGTGAAACATAGAAAGTATGCAAGGTGGAAGGCAACATATATTCATAA s rn2.chr1 266448286 50 - 276301343 AATGTGAAACATAGAAAGTACGCAAGGTGGAAGGCAACATATATTCATAA a score=231384.000000 s hg15.chr12_random 262117 1550 + 590431 TGAAATGCAATAGCTCGCTTTTAATAACAACATACAAAAGTCTGGAGAAAGCCCCAAAGTAGTCCCCTGTTCCCAGAGCCCAAAGAATAAA--CAGATGGGAGAACAAGACCCTCCTCTTCCTTTTC--CCCCACAGAGAAGATCCCTAAACACATCACCGGAACCCCTCAAATATTCCTGGGAACTTCAAACAAAAAAACATAGCAACA--AAGAGACCCAGCTTCCAGTTTATTCCCAGTTGGGTAGGGGACAGGCCTGCTCTCGGGGAGGGTACCGTGCATCCTTGCAGATGGAAACGCCTTCATGCTGGACCAGGCCGAGGGCAGGCCTGGGG--CTGGGCAGCTGCTCACACGAACCAATGGGGGTGC--CCATGTGAGCCTCTGAGCAACTCCTCTGCCTCAGTGAGCTGGTCTGAGAGATGGGACCAACACACGCCGTCAAAGGAAGTGAGTTCTAGGAAACCAGGGAAGATGAAAAGACAC---------------CCCCGCCCCCAGAAGACGGGGTCCCACCTAGAACCTTCCTGGGAGGATGCCAGCCCCACCCCACATCAGACACCCTTTGGCAGATATCCTGTTCTGCCTGGCTACCGAGGCCTCCCGACTACCCTCAGAATCCAAATTCTGCAGGTTCCTCCGT---GCGAGGCCCAGCGTGGGATGTCCC-AGGTTGGAGGTGTGCGTGTTGGCGGTGTTCTTTGGCTGGAAGCAAAAGGCCGTTCTGGCGGGATCGGGGCC-GTCTGCTCAGCTGGAGG-------CCTTTCTGGAACTGGGCGT-GGGTGAGGTATTCCCAGCCCAGGGCAAAGCCATCAAACTTCTCGTGTTCCC--ATCTCCTATTAGAACAAAGTGGTA----AACTG-GGGAGGATGAG-CTGGGACTGACTCGGGCGCTGAAGTTCATCCGCACGGCATTCCAGAATCTTCCACCGGCTTTCCTCAAGAACATGTGGACAGTC-CAATGCACTGAGTGCCCTGGCTGGGTGGTTCCGCCTGCTGCTGGGGGGACGTGAACATAGACCCGCCGCTCTGGCCCCGCTCTGGGCATCAGCTGCTCCTTCCGCTCTCTCTCATGGCCGCTCGGCATCTCTAGTCCTCTTTGGGTGCAGAGGGCTCTCCAGAGATGGGTGGGGGGCGATGGGCGGGGGGCACAGGGC-GGAGCAGCGCCAGCAGGGGAGGG------AAGAGGCACTTCAGTTTGGGCTGGTGTTCGTGGAGTCGGCCCCGGCCCCGGGAGTCGAGTGGCCTCGCCTGGCTGCGGCTCCAGCACTGGCGTGCCATCGCAGACCCCGG-TGGCGGTGGACAGGTAGGCACTTGGCAGCACTCCGAGGGCTGGGCCCGGCCGGGGCTCTGCGCAGGCTCCGCACGCAGCTAGGTCATCAGGATGGGCTTCTGCCGAACTTCCAGGATGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTAAAATCCGATGCAGCGGCAACGTGACGTAGGTTAAGTGTGCATAGAGAAGGAAGTTTCCATCTGCTCTGTTCAGCTTCAGCCAGGACCCGACCAGGGACCGTCCTGTGCCCGACAGGGACCGAGACCGCAGGTTGGTTGCATTGTGCAGATCGGCT s mm3.chr15 85229638 1715 + 104111694 tgaaatgcaatagctcgcTTTTAATAACAACATACAAAA-TCTGGAGAAAGCCCCAAAGTAGTGCCC-ACTCCCAGAGACCAAGGAATGGAGCCAGACAGGAG-CCACGCTCCCAAGCCTGCTCTCCAACCCAGAGGGGCTGAGCTCGACATACACAGCTGAGTTCTCTGGA----TCTGGGGCACT----------AGACCCAGCAGCAACAGGAGGCTCAGCTTCCAGTTTATT-CCAGTTGGGTAGAGG--AGGCCT-----------------------------CAGTTAGAG-------CACACTG--CCAGGGTGAGGCATGGGCTGATGACCCACATGGCCTCTTGCACCCACTGAGGACAATGCAGACTCATAAGAAGCCTGGTCTCCTCTCTGCCT-AGAAAGCCAGGCTGA-AGACAAGACCAGCATGC-TGACCAAAGCA-----------------CGGGGCAAAGGGGACAGCACCAGCCTCGCTCTAAGCTCTGGCCCCAGG----GTGGTTCTGCCTACAACCTTCCCGAGAGGGTTCCA-CCCGGGTCCCCATCAGACATCCCTCAGCAGAAGTAC---------------------CCTCCCACTTTCCTTCAGAA-CCGAATTCTGC--GTCCCTCCGGAGAGCCGAGATCAACGCAGGACGTCTCGGGGTCGGAGGTGTGTGTGTTGGCGGTGTTCTTTGGATGGAAGC-AAAGGCCATTCTGG-GGGATCGGGGACTGTCTGCCCAGCTGGGGGTTGAGACCCATTCTGGAGCTGGGCATAGGGCGAGGTATTCCCAGCTGA------------CAAACAGCTCATGTCCCCTGACCCCCAGCTGGGACCCACTGTGACAAGAACTCTGGGGGAACAAG-TTGGGACCGACTCTCGAGCTGAAGTTCGTCAGTACTGCATTACAAAACCTTCCACTGGCTTT-GTGTAGGATGCGTGGACAGTTGCTCGGCAC--AGAGCCCCAGC---------------------AGGGGTACGGGAGCCGAGGTTGGGAGGTCTAAGAACATTCTGGAAGCTGGCAGCCCCTCACGCTCTCT---ATGATCTCTTGGTGTCTCTGGCCCTCTTTGGGAGCAGAAGGCTCT-CAGA--TAGGCAGAGGGGGCTGAGC-GCGGGCACAGGGTGGGAGCAGAGCCAGCGAGGGAGGA-------CGAGGCACTTCAGTTTGGGCTGGTGTTCATGGAGTCGGCCCTGGCCCCGGGAGTCGAGTGGCCCTGCCTGGCTGTAGCTCCGGTGCTGGCTTGTCACAGAAGACCCCGGTTGGCGGT-GACAGGTAGGCACTTGGCAGCATTCCCAGGGCCAGGCAGGGCCGGGGCTCCGTGCAGGCTCCACACACA-CTAGGTCATCAAGATGGGTTTCTGCCGTACTTCCAGGATGTCTAGGGTGACAGGAGGGAGGCAGGCCGGGTGAGGACACTCTTGGGAGGGAGCCACAGCTACCACACACCCCCACCATTTCTGATAGGACCTCACAGGCTGCATACACCATCACCACCCTACCCTCCCATGCCAGCAACGGAGATGCATGGATGCAGAGGCCAAGAAAAACAAGACCACCACAGAGACTCCAGAGGCGACACCCAGCTTCAACCACTCAGAGGCCAGTGAGGA--------------------AATGTCAGT----------------------------------GGGAGGCTCTGC--AGGGCTCTGCCCTATGTACCTGTTAAGATCCGATGCAGCGGCAAAGTGACATAGGTCAGGTGTGCATAGAGAAGGAAGTTCCCATCAGCTCGGTTTAGCTTCAGCCAGGACCCGACCAGGGACCGTCCTGTGCCAGACAGGGACCGAGATCGCAGGTTGGTGGCATTGTGCAGGTCGGCT s rn2.chr7 111444295 1773 + 139049774 tgaaatgcaatagctcgcttttaataacaacatacaaaa-tctagggaaaaccccaa-gtagtgccc-actcccagAGACCAAGGAATGGAACCAGATGGGAG-CCATGCTCCCGTGCCTGCTCTCCAGCCCCGAGGGGCTGAACTCTACATCCACAGCTGAGTTCTCTGGA----TCTGGGGCACT----------AACCCCAACAGCAACAGGAGGCCCAGCTTCCAGTTTATT-CCAGTTGGGTAGAGG--AGGCCT-----------------------------CAGCTAGAG-------CACACTG--CCAGGGTGAGGCTTGGGCTGATGACCCACATGGCCACTTGCACCCACCGAGGACAATGCAGACTCATGAGCAGCCTGGTCTCCTCTCTGCCT-AGGAAGCCAGGCTGA-AGACAAGCCCAGCATGC-TGATCAAAGCA-----------------CGGGGCAAAGGGGACAGCACCAGCCTCGCTCTAAGCTCTGGCTC-AGG----GTGGTTCTGCCTACAACCTTCCCAGAAGGATTCCA-CCCCGGTCCCCATCAGACATCCCTCAGCAGAAGTAC---------------------CCTCCCACTTTCCTTCAGAA-CTGAATTCTGC--GTCCCTCCGGAGAGCCGAGATCGCTGCAGGATGTCTCGGGGTCGGAGGTGTGTGTGTTGGCGGTGTTCTTTGGATGGAAGC-AAAGGTCATTCTGT-GGGATCGGGACCTGTCTGCCCAGCTGGAGGTTGAGACCCAATCTGGAGCTGGGCATAGGGTGAGGTATTCCCAGCAGA------------CAAACAGCTCATGTCCCCTGACCCCCAGCTGGGACCCACTGTGACAAGAACTATGGGAGAACGAGGCTGGGACTGACTCTGGAGCTGAAGTTCGTCAGTACTGCATTACAAAATCTTCAACTGGCTTT-GTGTAGGATGCGTGGACAGTGGCCTGGCAC--AGAGCCCCAGC---------------------AGGGGGATGGGGGTCGAGGTCGGGAGGTCTAAGAACATTCTGGAAGCTGGCAGCCCC---CACACTCT---ATGATCTCTTGGTGTTTCTGGCCCTCTTTGGGAGCAGAAGGCCCT-CAGAGATAGG-AGAGGGGGCTGAGC-GCGGGCACAGGGTGGGAGCAGAGCCAGCGAGGGAGGAGGACGGACGAGGCACTTCAGTTTGGGCTGGTGTTCATGGAGTCGGCCCTGGCCCCGGGAGTCGAGTGGCCCTGCCTGGCTGTAGCTCCGGTGCTGGCTTGTCACAGAAGACCCCGGTTGGCGGT-GACAGGTAGGCACTTGGCAGCATTCCCAGGGCCAGGCAGGGCCGGGGCTCCGTGCAGGCTCCACACACA-CTAGGTCATCAAGATGGGTTTCTGCCGTACTTCCAGGATGTCTAGGGTGACAGGAGGGAGGCAGGTGGGGTGAGGACACTCTTGGGAGGGAGCCACAGTCACCACACACACCCACCGTTCCTGACGGGACCTCACAGGCTGCAGACAGCATCACCACCCTACCCTCCCGTGCCAGCAAAGGAGAAGCACAGATGGAGAGGCCAAGAGAAACAAGACC-CCATAGAGACTCCAGAGACAACACCCGACCGTGACCA-TCAGAGGCCAGTGAGGACCATGGGGATCCACGTGGAGGGAGGCAGCGGCTGCAGAAACCCCATCCTGCTGAGCCTGAACAGGGAGGCTCTGCAGAGGGCTCTGCCCTGTGTACCTGTTAAGATCCGATGCAGCGGCAAAGTGACGTAGGTCAAGTGTGCATAGAGAAGGAAATTTCCATCAGCTCTGCTTAGCTTCAGCCAGGATCCGACCAAGGACCGTCCTGTGCCGGACAGGGACCGAGACCGCAGGTTGGTGGCGTTGTGCAGGTCGGCT a score=8380.000000 s hg15.chr12_random 263667 33 + 590431 CCACCGTCGTCCTCCCGGAAGAACTCCTCGCTG s mm3.chr15 85232255 33 + 104111694 CCACTGTCGTCCTCTCGGAAGAACTCCTCGCTG s rn2.chr7 111446939 33 + 139049774 CCTCCGTCATCCTCTCGGAAGAACTCCTCGCTG a score=40134.000000 s hg15.chr12_random 263786 1440 + 590431 CAGAGGACGGGGGGAAGGGATTACTGAATCTAGAAAAGGTACACATGTTCAAAGCAACACAATTTAAAGAATGCTCTTCTAACATACAACATATCTCCAATTTCACTGGATGTGAAGA-----AATACCAATACACTAATGAATACAACTTAATCATCTCACTCCTCAGAAATCTAAGAGCATCAGAAATAAGGCTTTATATATGAGGCTTTATATATGCAAAATATAAAAGTATCCCTAAGTAACATTAAATGTATATATTAAATTTAAACCAAAGAGTATGCTAATCTAGAAATGATGTTTCCCCATTAAGTCTGGGAAAGTTCCAAGGC-CACAGAACCAATCTGTCTTCAATCAAAAGGAAATCTTTAGCTTTTGACTGAATTTTTTTCTTTCCATGACTAAGTAAATAAATCTGCTACATCTCAATTACCCTTTAAGCAAGATTTTGAGATCCACTCTTTGACAAACTGAAAAGCACTG-----------AAAATAAA--CATTGCTCTTTCAAAACACCGATCCCATAATTCACTTTCCCCCTTTTCATTTTTGCCCACCCGAGTAGACTTTCGGGGAAGGACAGAGAGAGGAAAGACGGAAAGGAGAAAGGGAAGAAAAACTGATTCATTTAAGAATTTAAATTATTTCATCTCTTTTTATTACTTGACCTACCATTAAGACAATCTATAACAAAAAAA------GTATATTAGCACACATGGTATAATCAGACTGGTAATCAGGAAGCAATACAAAACGGTCCTTTGGCCATCTATACTTTCTAGAGCAGTAAATCTCATAAATTCACTTACCAAGCCCAGGAATAATGACTTTTAAAGCCTTGAATATCAACTAAGACAAATTATGCCAATTCTGATTTCTCACATATACTTAGATTACACAAAGATAAAGCTTTAGATGTGATCATTGTTTAATGTAGACTTATCTTTAAAGTTTTTAATTAAAAACTACAGAAGGGAGTAAACAGCAAGCCAAATGATTTAACCAAATGATTTAAGAGTAAAACTCACTCAGAAAGCATTATACGTAACTAAATATACATGAGCATGATTATATACATACATGAAACTGCAATTTTATGGCATTCTAAGTAACTCATTTAAGTACA-TTTTGGCATTTAAACAAAGATCAAATCAAGCTTTAAGCTTGTAAGAACGtaattttcatttttaattttttaaatat--aaaaaGGTAGCTAAACACAAAGTACAGATCAGAAACCCTCATTTAATATAGATTATTTTGGAAATTAAAAAATTTGTAACAAGGTGGCTTTCTTACCCACCCTAAAATGTAAATAAAACCTCTTCCCCAGATTTATACTTCATACTTGGTAACAACCTAAAAGTTTTTCAAAT--CTATGAAAAAAATCTACCATGAC---CAATTTAAATTACCTGGGAAAGGGCAGGAGAAGGGATCAATAA-CAGAGTCAGTTG s mm3.chr11 12342859 1277 - 122862689 CAGCTGGTGAGAGGAAGGGACTTCTGAACCTGGCCAGG-----CAGAGCTTAAGCAGCAGAACTCAGCCACT----CTCCAGCAC------TAACTCCAGCTTCCCTGCGTGTGAAGATCCCAGTTATCACCAGAGTAACTCATGTG----------CTCACTCTTCAAACTCCAGGAAGAAACAGAAACAAATCTTGATGTGTAAG--------------------------ATCCTCAAGCAGCTACAGGTGGATCT------TGTAAAACCAGGAGT------------------------CCAATCCAGTCTGTGAA-GCCCTAAGGCACACAGA-CAGGTCTGTCCT---GTGAAAACAACGCCATGGCTTTGGACAGAACCTTCCCCTTCCAGAGCTT--GTTAGTGAGTCTGTCCCACACCCATAA------AAGCAAGGTTTTGAAATCCACCCTTTGACAAACTGAATTGGAATGtattttaaaaaaaaataaataCATTACTTTTTCAAAATTCTAATCCCAAAATTCACTTTC---------ATTCTTTCCCAC-----TGAAATTTTGGGGAAAAACAGAG--------GAAGAAAAGGAAGAAAGGAAGAAAAACTGATTCGTTTAAGAATTTAAATTATTTCATCT-TTTTTATTCTGTGACCTACCATTGAGACAGTCTGTAACAAAAGAACAGCGATTAGATTAGCACAGA--GTATA-TCAGACTAGTGTCCAGGAAACAGCA---ACTGTCCCTTTGGCCAGCTCTGCTTTCT----CAGCAGATTGCTTAAATTCGCCCACCCA-TCCAGAGACAATGGTGCCAAGAG---------TCCACAAAGACACAGTATGCCAACCACGACTTCTGACTGATATTTAAATTGCACAAAGATAAAGCTTTAAATGTGGTAATTTTTAAATTTAGACTTATCTTGAAAAGTCTAAGAGTAAAACGACAAAAGGGCGTAACTTGTAAGCT-----------------------AGCATGGAACT--CTTAGAAAGCA-GGTGTTTATCTCCGTACA---GACCAAGGGGGTATATACACATGAAA-TGC-ATTTTATGGCGTTCTACATCATTCACATACATACATTTTTGGCATTTAAACAAATATCAAATTAAGCTTTAAGCTAGTAACa---------taatttttatttttttaaatataaaaaaaGATAGCCAACCACAAAGTAAGTACAGAAAACCCTCATTTAATATAGATTA---TGGAAGTTTTAGATATGGCAACAAGGTAGCTTTCTATCCCATGCTAAAACCTAAATGAAACTTTTTCCCAAA---------------TTAGTAACAATCTAGAAGCTTTTCAATCTACCAAGAAAAAAATCTACCATAACCAACAATTTAAGTTAACTGGGAAAGGGAGGGAG--GGAATTATTAATCAGAACCACTTG a score=258355.000000 s hg15.chr12_random 265242 1715 + 590431 GACGGCTGGGTTTATCATAAACCACTTTGGAAAATAATTCCAACAACACAACCAGCAGAGTGACACATACTATCTAAAACTCGACCAAATGAGGTTCTTCTCTGTTTACCCTAAATCCTCCCAGAATGGAGTCATTGCACTGAGTGACCTGCTTCCTGATTGCGCAGACTGAAACTAGCTAAACCTGAATGTACCTACTAGGGCACCATAATACTGCAGCAAGACCAAAGTGGTAAAGAAACACAGTGGACCTTTTACCAACCTGTTCATGTGATGTGAGCAATACCATCTTAAAACTTGTTACCTGAATCAGTAGATGAATCTTTT---ATCCAGTTCTTGCTCCTAAAGTTAAGTTTGAATCCCCTATTTTTGCACAGGGGCAGCAGATACACACAACAATGAGAACTCAGTGACTTTGATTTCTTTGTAGTGAAAAGTGAAGTCTCCGTTTCAGAGTTTGTGTCTTTCTTTCTGTCCATAACTGAAGTATTCACTACTCTTGTAAACCAACCAAGAGGAGGAGAAAGATGACCCAGAAGTGGATTCAGCCATTGTGCCTGAAATCAGTGTTTAAAAAAAAAAATCAACCAGGTTGTGGTAACAAGGCATTCTATTT-CTTCAAAAAGACTGTATGCCTGTGTCTGAGGAACTTACCTATTATCCACCTCTGTTGGAACTCTCTTTTAAAAAGTACATTTATAGATTGATCAGAATTATAACCATGGAGAA--TTTTTTCTTCTGAGCATTTTAATATACTTGAAAACAACATTGACTTGAAAAATTTCAGAACATTTTTCAGTACCTAGTTTTATTAAATATTACACTTGAGAGACACTTTTTAAAAATGTGTTAATGTCAATATGATGAGATTTTAGCCTTTCTCCAGAACTAAGGCATTAAAGAAAATAGCAAATATTAAAAAATAAAACTGTTACTTTTTTCCTTCTTTCTTTTCACCTTTAGGTTAATATCCAGTATTATGTGTTATCCCTTTGGATAAGTATGCTTTATTTTACCTCTGTT-----AAAAATTAAAATAAATGATTCTATTCATATTTGTCAGTAATTCAAAACTTATATGTGTAACTGAACGCGCATGTAAGGTATGGttttatttattttttttttttttGAGGAAATTTAAATGCTAAAGAAACAACGAAATGAAAAGGTATCAGGAAAAAAAGATCAGGAAGTTGTATTCAGGTACAAATCTTTTTTTAAATAAGTATTTTGTTGAGGTTGAAGAATTGCTGGCAATTAAAAGAATAGAGCTAATTATGGCTTTCATCATTCATTCATGTATTTATTGAGCACCTACTTATTATGGTGCTCAACACTTGTTACTGCAAGCTACCTTAATTTCCCAAGAGTGGTGCCTTACTCTGTTTTTTCTGATATGGTCTTCCAATCAGTGTGTGTAACATACCTG----TTGTTTATCAGCCATTGTAGGTGGCTGTGTCTGTTGCATCATCATAAGAAGTTTAAGCTTTGTGCTCTGATAAATTGTGTTCTGTTAAAGAGGTTAGTAGGATGAAAACAGCAAAACAATAATTTTTTCAACAAATTGTAAATTATAAGAAAAAGAGTTGGTTTGTGTACAACAATTTTAATGATTCCCTTGTTCATTTTTGCTGTGAAATGCACTGAAAA--AAATCCTCAAAATGAGTTATAGTTCCTGTGTTGGGAAAATTGACAAATAATAAAACTAGAGAACa s mm3.chr16 33027263 1571 + 98986639 GATGGCTGGGTGTATCACAAACCCCTGTGGAAAGGAATTC---CATCACAACCAGCTGAGTGACACACGCTTTCTAAGACTGGAC-AAACGAGGTTCTCCTCTGTGTACCCCAAGCCCTCTCAG-ATGGAGTCTTTGCACTGAGTGACCTGTTTGCTAACTGTACAGCCTG----------AACACGAATGTCCCTACTGAG--CCCATCCCCCTGCAGCAAGACCAAAGTGTTAAGGACAGCCGATGGGCCTC----CAGCCTGCTCCC-CAACACGAGCAGTGCCATCTCAGAGCCTTCCACCT--ACCGGTTCCTGCGTCATCT--GATC-------TGCTCTGAACGCT--GCTCAAGCCTCTGGTGTTTT--CGGGGGCAACAGATG---ACAGCAGAGAGAACTCAATGACTTGGGTTCCTGTGGAGTCAGAAGTAACGTCTC----TTGCAGCATCTGTGTTGCTTTCTGTCCATAGCTGAAGTGTTCACTGCTCTTGTAAGCCAGCCAAGAGGAAGAGGAACGTGACCTCCAAGTGGATTCAGCCGCTGTGCCTGAAGTCAGTGTTCACACA-------TCACTGGGCTGTTGTACCAAGGC---CTCTCT-CCTCTGGAGGCC---ATGCCTGTGTCTGAGGAA---GGCCGTCAGT--GCTCTGTTGGAACTCTCTTTT-AAAAGTGTATTTATA-----ATTAGAATTGTAACCATGGAGGAATTTTTTTCTTCTGAACATTTTAATATACTTGAAAACAACATTGACTTGAAAAATTTCAGAACATTTTTCAATACCTAGTTTTATTAAATATTATACTTAAGAGACAATTTTTTAAAATGTGTTCATGTCAAT---ATGAGATTTTGGGCTTTCTCAAGAACTAAGGCATTTAAAAAAATAGAAAATATTAAGAAG-AAAACTGTTAC--TTTTCCTTACCTATTTTCACTTGTAGGTTCATATTCAGTATTATGTGCTATCC---TGAGCAAGTTTGCTTTATCTGACCTCTGTTCACTCAAAAGTTAAAAC--TTCAACCTGTTCATGTCTGTCAGTAATTCAA---TTATGTCTGTGGCTGA--GTACACGTAACATATGGTTTTA-------TTTTATTTTTCAAGGAAATGTAAACACTGAA-------------GAAAGAGTAT---GAACTAAAAAGCAGCAATCTGCATTCAGGTAAAAATTGGTTTTT-TATAGGTATTTTATTGGGGTTGAAGAATTGCTGGCGATGAACAGAATCGTGCTAATTATGGTTT---TCATTTATTCAAGTATTTGCTGAGCACCCAC---TCGTGGTGCT-GACTCTTGTTACTGCAAGCTACCTTACTGT-CC-AGAGTGGTGCCTTACCCTGCTCCTGCCCACGTGGTCTTCCAGTCAGTGTGCA-AATGCACCTGGCGCTCGCTCGTAGGCCGTGCCAGGCGGCTGCGGC-----------------------------TGCGCTCTGAGAAACC--GTTCTCTTAGTAGGGTTCATAGGGTGAAAACAGC--GACAATGA-TTTTTCAGCAAATTGTAAATT------AAAAGAATTGGTCTGTGTTCAACCATTTTAATGATTCCGTT-TTCATTTTTGCTGTGAAGTGCACTGAAAAATAAAT-TTCAAAATGAGCTGTCATTCATGTGTTGGGAAAATTGAAAAACAATAAAAATAGAGACCA s rn2.chr11 18508859 1531 + 88445885 GATGGCTGGGTGTATCACAAACCCCTGTGGAAAGGAATTC---CATCACAACCAGCAGAGTGACACGCGCTTTCTAAGACTGGACCAAACGAGGTTCTCCTCTGTGTACCCCAAGCCCTGTCAG-ATGGAGTTGTTGCTCTGAGTGACCTGCCTCCTAACTGTACAGCCTG----------AACACGGATGTACCTGCTGAG--CCCGTCACCCTGCAGCAAGACCAAAGTGTTACGGACATGTGATGGGCCTCT--CCAGCCTGCTCAC-ACACATGAGCCTTTCCCTACCAGT--------------CCAGTCCATGCTTCATCTTTGATC-------TGATCTGAAAGCT--GCTCGAGCC-CTGCTCTGTT--CAGGGGCAGCACACA---ACAGCAGAGAGAACTCAGTGACTT---------TGTAGTAAGAAGTCAGGTCTC----TCGCAGCGTCTGTTTGGCTTTCTGTCCATAGCTGAAGTATTCTCTGCTCTTGTAAGCCAGCCAAGG---AGAGAAATGTGACCTTCAAGTGGATTCAGCCGCTGTGCCTGAAGTCAGTGTTCACACA-------TCACTGGGCTGTAGTACCATGGC---CTCTCTTCCTCCGGAGGCC---TTGCCTGTGTCTGAGGAA---GCCCATCAATT-GCTCTGTTGGAACTCTCTTTT-AAAAGTGTATTTATA-----ATTAGAATTGTAACCATGGAGGAATTTTTTTCTTCTGAGCATTTTAATATACTTGAAAA-AACATTGACTTGAAAA-TTTCAGAACATTTTTCAATACCTAGTTTTATTAAATATTACACTTAAGAGACAATTTTTTAAAATGTGTTCATGTCAAC---ATGAGATTTTGGCCTTTCTCAAGAACTAAGGCATT-AAAAAATTAGCAAATATTAAAAAACAAAACTGTTAC--TTTTCCTTACCTATTTTCATTTGTAGGTTCATATTCAGTATTATGTGCTATCC---TGAGCAAGTTTGCTTTATCTGACCTCTGTTCACTTAAAA---------------TCTGTTCATGGCTGTCAGTAATTCAA---TTATGTCTGTGGCTGA--GTACACATAAAGTATGGTTTTA-------TTTTATTTTTCAAGGAAATGTAAACACTGAA-------------GAAAGGGTAT---GAACTAAAAAGCAGGAATCTGCATTCAGGTACAAACTGGGTTTT-AATAGATATTTTATTGGGGTTGAAGAATTGCTGGCAGTGAACAGAATTGTGCTAATTATGGTTT---TCATTTATTCAAGTATTTGCTGAGCACCCAC---TCGTGGTGCT-GACTCTTGTTACTGCGAGCTACCTTACTGTCCC-AGAGTGGTGCCTTACCCCGCTCCTGCCCACGTGGTCTTCCAGTCAGCGTGCG-AACGCACCTG----TCGCTCTTAGGCCGTGCCAGGCGGCCGCGTC-----------------------------TGTGCTCTGAGAAACC---TTCTCTTAGTAGGGTTCATAGGATGGAAACAGC--GACAATGG-TTTTTCCGCAAATTGTAAATT------TAAAGAATTGGTCTGTGTACAACCATTTTAATGATTCCCTT-TTCATTTTTGCTGTGAAGTGCACTGAAAA--AAAT-CTCAAAATGAGCTATAGTTCATGTGTTGGGAAAATTGAAAAACAATAAAAATAGAGACA- a score=188845.000000 s hg15.chr12_random 267018 872 + 590431 GGGGCCACATGGGGCCAGTTTATTGCAGTTAAATACCTCTCTCTCTATTTTTTTTTTGTCAATTTTTCCATAAAGAAAATTAAAACACACACAC--------------------------------------------------------------------ACACC------CCCAAAGGGGAGCAGGGACCCAGAAACAAGAGGTGGGGTGGGACGTGGCCTCCCTGCATAGGTCCAGGCCCCGGGT--GGCCC----CCCAAAGGCTCCCCTCCTTCCCATCAGCACCCTGTCTCAGTACCTCCAGAGAGC-AGGAGGCAGCGGGACGTGGCAGGGCCTCTGTCC-CCTCCCTCTTGCCTCCAGGTGAGACCACTAGAAGTGCCGGGGCTTAGTGAGGGCCGGGAGAAGGGCGACAGACAGACGGATGGGCAGGGAGGATACCGTTTCCAAGTGGAGGAGGGCGGTGGGCACTGTATCCACAGAAATGCATTATTTCTCCCCGTTTTTTGTTAAAAATCTACTATAAAAAAACGCAGCTGGGGGAGGGGCATGTGTCCCTCTCTGTGCTAAGGGCTGGGGAAGGGGGCAGCAGAGGCCGGCGTGGGCGGCGGCGGCTGCGTGGTGG--TGGCGGGCGTCACTGCCGGGTGCCCTCGCCCACCATCTCCAGGTTGTGCTGCTGCAGCTGGGCTCGAAGCAGGGCGTTCTCATTCTTCAGCTCCTCGAT---------------------------------------------------------------------------------CTGCTGCCTCAGGAGCTCGTTGTCCATCTGCAGCCGCTCGGCCTCTTTGAAGGTCTCCTGCATGCGCTGGTTGGTCTGGCGCAACTCCCGGATGTAATCGCAGGCCTTGGACAGGATCCCTCCTTTACTC-------------------------------------------------------------------------------------GCTCCCGTCTTGCTGTTGTCTGCGTTACAGTCTGGAATGATTTTCGAAAGCTGGACGATCCAGTTGTTGATCTTGTCCCTCCGCCTCCGCTCCACT s mm3.chr7 22549825 1062 + 134401573 GGGGCCACAC-TGGCCAGTTTATTGCAGTTAAATACCTCTCTCTCTATTTTTTGTCCA-----TTTTCCATAAAGAAAATTAAAacacacacacgcacacacgcgcatacacacacacccaaacgtacacac------------------------------acacccacacacCCAGAGGGGAGCAGGGATCCAGAA-CAAGAGGGGTGGCGGG-CATGGCCTCCCTGCAAAGGTCCAAGCCCCAGGGAAGGCCCGCATCCCCAAAGCT-CCCTCCTTCCCATGAGCACCCTGTCTCAATACCTCTAGAGACCAAGGAGGCAGCGG---GCAGCGGGGCCTCTGTCCTCCTCCCCTGCTCCTCCTGATGAGCCCACTATAAGTGATGGG--CTGGTGAGGACC--GAGAAGGGAGGCTGATGGACAGATGGGCAGGT-GGGCATCGTTTTCGCATGGAGGAGGGTAGTGGGCAACGTATCAACAGAAATGCATTATGTCTCCTTG-TTTTTGTTAAAAATCTACTATAAAAAAACGCAGCTTGGGGAGGGGCA--TCTCCCTCTCTGTGCTAAGGGCTGGGGGA-GGGGCAGCAGAGGC---------CGACAGCAGCTGAAGGGTGAGCCGGCGGGCATCACTGCCGGGTACTCTCGCCCACCATTTCCAGGTTGTGCTGCTGTAGCTGGGCTCGAAGCAGGGCATTCTCATTCTTCAGCTCCTCGATCTGCAGGCACCATGGGGGACACGGGAGCCAGGGTTAGGCCTTGGCACACTGGGCCCCCGTGGATTCCAGGCCTGTACCCACCTGCTGCCTGAGGAGCTCATTGTCCATCTGCAGCCGCTCTGCCTCCTTGAAGGTCTCCTGCATGCGCTGGTTGGTCTGGCGTAGCTCCCGGATGTAATCGCAAGCCTTGGACAGGATGCCCCCTTTACTCTGGAGTGGAGGGCAGACAAGAGTCAGGAGGACAGAACAGCTCGGCTCCTGTGCCCGACTTCTGGAAGAGACTGAGGACACTTACTGCTCCTGTCTTGCTGTTGTCTGCATGACAATCTGGAATGATTTTGGAAAGCTGGACGATCCAGTTGTTGATCTTGTCCCTCCTTCTCCGTTCCACT s rn2.chr1 77364655 1091 + 276301343 GGGGCCACAC-TGGCCAGTTTATTGCAGTTAAATACCTCTCTCTCTATTTTTTGTCCA-----TTTTCCATAAAGAAAATTAAAacacacacacacacacacacacacacacacacacacacacacacacacgcacacgcgcacacacacacacacacatacacacccacacacCCAGAGGGGAGCAGGGATCCAGAAACAAGAGGGGTGGGGGGGCTTGGCCTCCCTGCATAGGTCCAGGCCCCAGGGAAGGCCCCCATCCCCAAAGCT-CCCTCCTTCCCATAAGCACCCTGTCTCAATACCTCTAGAGACCAAGGAGGCAGCGG---GCAGCGGGGCCTCTGTCCTCCTCCCTCGCTCCTCCCGATGAGCCCACTATAAGTGATGGG--CTGGTGAGGGCC--GAGAAGGGAGGCTGACGGACAGATGGGCAGGT-GGACATCATTTCCGCATGGGGGAGGGTAGTGGGCAATGTATCAACAGAAATGCATTATGTCTCCTTG-TTTTTGTTAAAAATCTACTAT-AAAAAACGCAGCTTGGGGAGGGGCA--TCTCCCTCTCTGTGCTAAGGGCTGGGGGA-GGGGCAGCAGAGGC---------CGGCAGCAGCTGAAGGGTGAGCCAGCGGGCATCACTGCCGGGTGCTCTCGCCCACCATTTCCAGGTTGTGCTGCTGCAGTTGGGCTCGAAGCAGGGCGTTCTCGTTCTTCAGCTCCTCGATCTGCAGGCACCACAGGGGACACGATAG-CAGGGTTAGGCCTTGGCACACTGGGCCCCCTTGGACTCCAGGCCTGTACCCACCTGCTGCCTCAGGAGCTCATTGTCCATTTGCAGCCGCTCTGCCTCCTTGAAGGTCTCCTGCATACGCTGGTTGGTCTGGCGTAGCTCCCGGATGTAATCGCAAGCCTTGGACAGGATGCCCCCTTTACTCTGGAGTGTAGGGCAGACAAGAATCAGGAGGA-GGAACAGCCCAGCTCTTAGCCCCACTTTCTGGAAGGGACTGGGGACACTCACCGCCCCTGTCTTGCTGTTGTCTGCATGACAATCTGGAATGATTTTTGAAAGCTGGACAATCCAGTTGTTGATCTTGTCCCTCCTTCTCCGCTCCACT a score=6364.000000 s hg15.chr12_random 267890 299 + 590431 TCGTTGTGCTGGGCTCTTCTCCTCTCATCTCGGGGTGTTCTGGTTCCATCAATTTTTGGAGAGTAAGGGTGTGTCCGGGGGGCGATCGTCCTCTGTGTTCCTGTCTGAAGCACATCCTGGGGCGTCATCATGACGTAGAACTGGCCT--------CCAGCCTGCAAGCTCTGG-------TCTGTGGTCTGTACGGACACAGCCGTAGT------------------------------ATCTCCCACACTGGACGCTGGGAAATAGGCAAATCGTGCCTCCCCGCTGACAGCCTCG-GCCGCCGGACTGCCACCATTGCTGAAGGGATTTTGGATCACAGCCTG s mm3.chr11 44927188 343 - 122862689 TCCTTATGTTGAGCCCTCCGTTTCTCATCTCGAGTTGTCCTGGGAGCCTCTGACTTCGGGGAATAAGGGTGGGTCCTGGGGGCAATCGATCGCTGGCTCCCTCCCTGCAATACTTCTTGTGGTGACATCATCACAAAGAATTGACCTGTGCTGAGCGGGGTTGCCTGCCCCAGTAGTGCCTCTGAGCCCTGGGTGGTAACAACAGCTGTTCTACTCCCAGATGTGGTACCCCCTGACCCATCTCCCACTGCGGTGCTGGGGAAATATGTATAATGTGTCTCAGCAGCTGCTCCCTCGTGTCAACGA--CATCGTCACTGGTGAAAGCTCCCAGGATCACTGCCTG a score=52239.000000 s hg15.chr12_random 268189 208 + 590431 TCCTCCATTTGTCTCTGTGCGGAACTGGTACTGGATGTTGTGGTCGCCGAACGCCGCCTGCTGGACGCTGGTGATGGCCACCGCTGTCTGCTCCTCCGCTCCTGGGCCGTCCCCG------------------------------------------------------------------------------------------------------------------CCTTCCTGCAGCTCGACGCCCTCCTCCGCCTCGGGTCCCTTGTCGTGGCTGGCGGCGGC-----AGCAGCGGTGGCCGAGG-CAGCGGGATCCAGACCC s mm3.chr7 22559977 327 + 134401573 GCCTCCATTACTCTCTGTACGGAACTGGTACTGGATATTGTGGTCGCCGAACGCCGCCTGCTGGACACTGGCGATGGCCACCGCCGTCTGCTCCTCAGCCCCCGGGCCGTCCCCGCCTGTGGGGGCAGCAGGGCAGGGGGCACGCTCAgcgggcgcgcggggcctcccggcgtccccggcctgcaaccccggcgcgggccgcagcccccgtggcccccgcAAACACTCACCTTCCTGCAGCTCAACGCCCTCCTCGGCCTCGGGTCCCTTGTCGTGGCT-GCGGGGGCACACCAGGGGCAGGGCCCGGGGTCAGCGAGGCCCGCACCC s rn2.chr1 77374732 327 + 276301343 GCCTCCATTACTCTCTGTGCGGAACTGGTACTGGATATTATGGTCGCCGAACGCCGCCTGCTGGACGCTGGCGATGGCCACCGCCGTCTGCTCCTCAGCCCCCGGGCCGTCCCCGCCTGTCGGGGCAGCAGGGCAGAGGGCACGCTCAGTGGGCGCGTGGGGCTTCCCGGTGTCCCCGGCCTGCAACCCCGGCGCGGGCCGCAGCCCCCGTGGCCCCCGCAAACACTCACCTTCCTGCAGCTCAACGCCCTCCTCGGCCTCGGGTCCCTTGTCGTGGCT-GCGGGGGCACACGAGGGGCAGGGCCCGGGGTCAGCGAGGCCCGCACCC a score=6561.000000 s hg15.chr12_random 268397 24 + 590431 GGGTCCAGCATGTCCATggggggg s mm3.chr7 22560566 24 + 134401573 GGGTCCACCATGTCCATGGGGGGG s rn2.chr1 77375321 24 + 276301343 GGGTCCAGCATGTCCATGGGGGGG a score=34142.000000 s hg15.chr12_random 268789 430 + 590431 --AATTCTATtccttgtttt-gcagatgaggaaaccaatattctgaaaacttgtgacacatacaaagtcaAAAAATGAGCAGTTCTTAGATATGAACTCCTAGTCCATGTTTTCTTCCATGATAATAATTATCCAACCATATGGAATAAACTCATC-TTCCTTCCCTTTCCGTCTTCAGACACTGATAGGAATGCCTTGGTGACAAAGTACTGTGTGTTTAAATAATTCAACATTCTTTGAAAACTGCCCCCAAATAGCTACTCCCCTGCCAGAAAAGAATAAAGGAGACTGGTCAATTGAGGTAGTCTCATAACATATTTAAATGTGCCTAAGAAACACACCATTCTCCATTAGCTTTTACATTTTTGTACTATAGG--TTTACTTTTCCAACATTCAAAATATCTACACAAAAACACTA--ATTTGAAACTGTAGt s mm3.chr10 7647520 411 - 130738012 --AATTATATCCTTCATTTT-TCAAGTAATTAAAGCAATATTGTGACTATCTGTG--ATGTATGGATTCAGAGACGAGGCACTGCTGAGATCTCAGCCTCAGG--CAGGCAGCCTCTCGTCCCCAGGTTCACACAA-CACAGAGAATGAACTCACC-ATCCTAAACTATCCAGCTACAAACACTGACAGGAATACTGGAGTGACCAGGCA--GGTTGTCTAAACAACTCCAAGACCTCC-ACAACTGTTCCCAAATACCTCTTCTTGTGCC--ACCAGCAT-GAGGAAACTGGTTAATT---TTTATTTTGTTACCCA-GTGAATGGAGCGAAGAAA-ATACCATCCACCATTTATTTTTA--TCTCTCTACTATTTA----TTTTTTTCAAGTAATCAAAATGTTCATA-AAAAGCACCAGGAACTGCCACATTCTT s rn2.chr7 60459040 402 + 139049774 AGAATTGTATCCTTCATTTTGTGAAGTAAATAAACCAGTATTGTGACCATCTGTG--ACCTATGAATTCAAAGACAAAGCACTGCTGAGGTGACAGCCTCAGG--CAGATAGCCTCTAGTCCTGAGGT------------------TAAACTCGCTGGTCCTTAACTTTCTAGCTAAGGAGACTGACAGGAGTACTGGGGTGAGCAGGCA--GGGTGTTTAAACAACTCCAAGTCCTGT-ACAACAGCTCCCCAATACCTCGTCTTCTGCC--ATCTGCAC-GGGGAAACTGGTTAATT---TTTATTTTGCTATCC---TGAATGGAGCTAAGAAA-ATGCCATCTGCCATTTATTTTTATCTCTCTCTACTGTTTACTTTTTTTTTTCAAGTAATCAAAATGTTCATA-AAAAGCACCATAAAGTGCCACATTCTT a score=12676.000000 s hg15.chr12_random 270774 209 + 590431 AAGAAAA------------------GAAACTGTAGTATAAGGTAGCCAGTG--------GGCTTGTATAAGACAGACCAGAGTTAAATCCCCTgcaactgcactaagctcttctgtaaacctcagtttgcctcatctgta-aaatagagctaaagctgA-CTTCACATTTGTAAAATATTTGGTTGACCTCTCAGCACACACATGCTAAGTAAATCATAAGCACTAATAGGGATTCT----------------------------- s mm3.chr10 7647931 237 - 130738012 GAGAACAGTCGAGTGGTTAGGTCCTGAAACTATA--AGAAGACACCCAGTGAGGTCTGGGTCTTGGCTAAGGTAACCC--AGGTAAAACACCAACATCTCCAAGAC-C-------TGAACCC--ATTTGTCTC--CTGTATAAGTGCAGCTAGAGCTGAGGGCCACATTCTTAAGATG----------CTGTCAGCAGACAAATGT---ATAAATCATAGGAACCACAGCTGATCCTTACCAAAAAAAAAAAAAAAAACAGAAGAa s rn2.chr7 60459442 229 + 139049774 GAGAACGGTGGAGTGGTTGGGTCATGAAACTATG--ATAAGATAGCCAGTGAGATGCAAGGCTTGGCTAAGGTAAACCAGAGATAAAACACCAACGTCCTCAGGAAGC-------TGAACCC--ATTTGTCTC--CTGTATAAGTGCAGCTAGAACCGAGGGCCACATT-------------------CAGCCCCCGAAC--ATGT---ATCAACCATAGTCACCATAGCAGATCCTTACCaaaaaaaaaaacaaaaaaacaaaaa a score=49155.000000 s hg15.chr12_random 271006 402 + 590431 ------------------------------------------TTTATACGCTACTGACAATTGTTTGTACTTGA-TTTTCAAGTGTTCTTAAATCATTTCATAGTACATGCTGAACATTACTGCTAGAATCTGTAGAAATCTGTAATTTCTAAGGCTTAATATTTTTAGTCACATTCAGTGGAGATTAAATAAAAGTGATTTAGTGGTGATAAGAAGAACTCCAAACCACCTCATATACACTGGTGCATTGAGAAACATCAATAAATGTTAATTATCTGACTGTCACATTATTAAAACTTTAATAAATCTGT-TTTTTCATAAAGGAAATATAGAAAACAAAACATTTTGCCTGTAATAAAACTCTAATTTTTATCACTTCTATTTTCCTTTAGGTGATG-TGCCCTATTGAAGACAATAGGAGACACGTATATCGTCTTTCTCATA s mm3.chr10 7648319 412 - 130738012 aagaagaagaagaagaagaagaagaagaaaagaaAA----ACCTGAAGCAAAAC-AATAGTAATTGGCATATGATTTTTCAAATATTCTGAAATCACCTGACTGACCCTACTTA--------GCTAGAATCTATAGAAATCTAGAACCTCTAAGGCCTAAAA-----AGACATACCTAGGAGAAATG-AATGAAAGTGATTTCGAGCTGAT---AAGTCCTCCAACCTGTGTGATATAACCCAGTTCATT-AGAATCATCAATAAATACCAAACAC----CTGTCCCAATATTAAATGTTTAACAAGTCTGTATTTCTTCTAAGGCAAATATAGCAAGCAGACCATTCTGCGTGTAAT-AAATTT---ATTTTATCACTTCCATTTTCCCTTAGGTAAAGATTACCTATTGAAGTCAGTGGGAGGAAC----ATCACCTTTCTCACA s rn2.chr7 60459677 420 + 139049774 aaaaaaaaaaaacaaaaaaaaaaaaacaaaaaaaaaCCTCACCTTAAGCAAGAC-GGTACTAACTGGCGTATGATTTTTCAAATATCCTGAAATCATCTAGCCGAGCCCATTTA--------GCTAGGATCTATAGAC-TCTAGAACTTCTAAGGCCTGAAA-----AGACATACCTAGGAGAAATT-AATAAAAGTGATTTAGAGTTGAT---AAGTCCTTCAACCTGTGTGATATGAGCCAGTTCACT-AGAATCATCAATAAATGTCAAACATCTGACTGTCACAATATTAAATGTTTGACAAGTCTATATTTCTCCTAAGGCAAATATAACAAGCAGGCCATTCTGCGTGCAATAAAACTT---GCTTTATCACTTTTATTTTCCCTTAGGTAAAGACGCCATATTGAAGGCAGTGGGAGGAAC----ATCGTCTTTCTCACA a score=215761.000000 s hg15.chr12_random 271408 1717 + 590431 TTTCAGCATTTAAAAAAAAAAAAAAAGACTGTTGATTTGTTTTAACCTCCGCAGATGCTTTGTGAAGGTACAAAGGTGCATATGGTCAAGATGAGACATTTCCTATTTTTATAAGCACCTTCAAACTTCCATTGCTTACATTTGTATTGAATTTTCTCAAAGCACAATAGTAAAAAAGTCTCTACAGGAGTAAAACTGTATCCAAACTATTCCATCTCAGA---CTTTGTCTTATTCCTAAAAGTACTCTATGGAAGAAAATATTTGAAAATGTAATGGGAAATAATCCAATCTAAAACACAGCACCCAAAATTTAACCTTATCAATAAAAAAGCAAAT---CAGTATTTTGGTACTATGATACTACTAAATATTCCACAA-ATAACACACTCAGAAGAGAAAAAATAAAATTCTATATTCCTGATTATTG-CAAGGTTTAAAAAAT------CACTTAAATCTAAATACTGGAGGGAAATGTAGTTGGCAGAAAATCATGGAAGCACACTCATGCTACAGA-CAAAATTGCCCTGAAATTTGCCCAG------------TTCAGAGCCTCAATGCATACTTACATATTCTC--CTTATTAAAATGCTGGAAATTAATTTCTCGCCCAAGAGGAATTCATAGTCCCATGTTT-AAAGCACAAA-GATTACAAGGGGAGCATTTAGATTATCTAGAGATGCCATCATGTGAATTTAGCCTATTATTATTGAACATTCGTAGTTTATGGACAAAAAATAGTAAATCAGTTCAGCAGGATAGGC-TGCTTAAGAAGGATTAGACT-ATCACACTATAAATGAGATAGAATTTTACTACATGGAATTCAGTGAGATAAATTTAAGCTTTGTAGCTTACAAATTTGTGGTATTTACCATAAGGGCAGCACAATAGAAATCAATGCCTGCCAGTACCCA-CTCATAAATCTCTAATCACAGCACATAACAGGTTTGAACTAATGCAGGATCAAGTAGAACACAATTTTCCTGGTTAACATATTATAAAAGTAGGTGTGTTCATAAACACACAA---GAAAAAGGAAAGAAGACTTCCCACTGCTAATGGGTGCCATTTGAGACTTAAGTTAATAGTAAGTCTAAAATTCCAGTATCTAATCCTTCAGGCAAATACTGCACCCAGATATTAAACACTACACACATCATCATCACACAGCATGGTGGCTCTGTTGGAGTTACTCTATTAGAAAAATCACCCTTATTACTAGTCTAATACCACAGTGTGAGTAATGAACTGCACTGTAAGTTGTACAGAATCATTTAATGAACTGCAATAATATGAAATTTCTTT------------------------TTGCTCTATTTAATAAC--AACTTATTCACTCAACTACTGAGGCTTCAAA-TCTTGACCATCTAATATTAGACAC--TGGGAGATTCAAAGTGTAAATATAACAAACTAGTTGT-AAGTTAGTCGATAATTTAAGGTCACCTTCAAATATAGCACAATCAAAAGCCAAAATACTATTGCACTTTTACAACAATTGGTATAATGGCAACAGGTTCTATCTTACAAAGTCTACCTAATAGGCCTCATCAATATATGC-----AGAAGAGAAATTAACTATCTTGGACCCACTTTCCATGAATAGTGCCAGGGACATGCTAGATACTTCTTAAATACTTGATATCTGACTGTTGACTGATATCTTAGTGAACTACTGTGGAATGCATTTAACAAAATCTTTAAAATATGTATTATTCCACTGGGCTATATAAACACACATCA s mm3.chr10 7648731 1632 - 130738012 ---------------------------------------------------------TTCTGTGAGGGCAGAAAGCTGT---------GTTAGAGATGCATCCTATTTTTATAAGTACCTTAAACATTC-ATTGCTTACTTTATTGCTGAATTTCCCTACACCACGAAAGTGTAAAAA-----------------CTGTATCC-ATCTACCCCAGCTCACATTTCTTGGTTTTATTCCCAAAAATGTCCCAACAGATCAAATGTTTTGGATTATAATGGGTACTAATCCAATCTAGAACATAGCACCTGAAGTTCACACTTACAAACAACAAACAGGACTGGCAGAAGCTACATACTAAAATATGTCTAGATTCTTCACAATAAAATGTAACCGTAAGAGAAA----ACTATTCTCCTTAACAGAACATTAACAAGGTTAAAAAAATAAAAGTCGTTTAATCCTAAATAATGGAGGGAAACATAATTTTCAGACAATAAGGTAAGTGCTCTCATGCTGCGGA-AAATACTGTCCTGAAATCTTCCCAGCAGACAAAAGGTTGCAGAGACTACAAGCGCA--TACACACTCTC--ATTATCAAA--GCTGAAAAGCAAGCCCATACTCAAGAGGCCCCCATGCTCCTACATTTGAAAGCACAAAGGGTCACAAGGGGAGCGTTCAGATTATCTGCGAATGTTGTCAGGCAAATT-ATCCCATTATTA---AGCATTTGTGGCTTATATTTGGGAA--AATGAGTGATTACAGCAGGATACTCTTGCTTAAGAAAGGT---ATT-ATCAGTTGATAAATG-GGTAGAATTCTACTATACAGAA---------ATACACTCAGGCT-------TTATAAATCTGGAGTCTCTGCCAT-AGGGAAGCACAATAGAGATCAATGCCTGCCATTCCCCACCCCACAAGTCTCCAATCATAGAATTCAAGAGGCCTGAATAAATTCAAGATCAAGTAGAACACAATTTTCCCGGTTAACACATTTCAAAACTAAGTGTGCTAATAAACACACAACAGGAAACGGGAAAGAAGACTTCCTGCTGCTAATGGGTACCAGTTGAGATTTAAGTTAATAGTAAGTCTCAAATTCCAATATCTAATTCTTCATGCAAACACTACACCCAGATATTTAAGAGCACACACGTCTTCATCACACAGCACGGCAGCTCTGCTGGACGCACTCCATTATAAAAATCACTCTTATTACCCGTCCAGTACCACAGTGTGAGTAATGAACTTCATTGTGAGCTGTATAGGATCCCTTAATGAACAGCAATCATATGAAATTGCTTTCCAGTAGAATGTGTGGAAGCCGGGTTGTTCCACTTAATAACCTACTTTGTTTACTCTGTTATTCTGTCTTTAAATTTGTGATAATCTGCAGGCAGGAAAGACGGAAGATTCAGTACATAAATATTACACATTATGTCT-AAGTTGAGC---AATGTAAGGTCACCTTCAAATGTAGCA-ACGCAGATGCCAATATCCCTTTATATCTATTGTGTAATGGGTAAAGTGACAAAAGGTTGTACCTTCAAAAA--------------CTCAACAATATATGTAATATAGAG-GGAAATCAG-----TTGGCCCAATTTCCCATAAATACTGTTTGGGGAA---TATATATTCCTTAAACACTTGTTATCTGATGATAACTTGATACCTTGGTCAACTAATGTGTAA-GAAATTAACAAAATCTTTTAAATGTCTATTA---CATTCATTTAT-TAAACATATATTA s rn2.chr7 60460223 1653 + 139049774 ---------------------------------------------------------TTCTGTGAAGGCAGAAAGTTGT-------TAGAAAGAGATGCACCCTATTGTTATAAGTACCTTCAACCTTCCATTGCTTACCCTATTGCTGTATTTTTCCACACCACAAAAGTGTAAAAATCTCTACAAGAGGGAAACTGTGTCCTGTCTACCCCAGCTCACAAGTCTTGGTTTTGTTGCTAAATGTGTCCTAACAGACCAAATGTTTTGGACTATAACGGGTACGAATCCAATCTCAAACCTAGCACCCAAACTTCATACTCACAAATAACAAACAGGATGGGCAGATGTTATATACTAAAACGTGTCTAGGTATTTGATAATAAAATGTAAACGTAAGAGAAA----AATATTCTCCTTAACAGAACATTGACAAGGCTAAAAAAATAAGAGCCACTTAGACCTAAATAATGGTGGGAACCGTAATTTTCAGACAATAAGGTAAGTGCTCTCGTGCTGCGGACAAATACAGTCCTGACATCTGCCCAGTAGACAAAGGATCGCAGGGACTGAGAGCGCA--TACACTCTCTCTCCTTATCGAA--GCTGAAAAGCAAGCCCTTGCTCAAGAGGCCCTCGTGCTCCCGCATTTAAAAGCACAAAGGGTCACAAGGGGAGCGCTCAGATTATCTGCAAATGTTGTCGGGCAAATTTACCCCATCATTA---AGCATTTGCGATTTATATTTGA-AA--AGTGAGTGAATGTAGCGGCACGCTCTTGCTTAAGAAAGGC---ATTTATCGGCCGATAAGCG-GGTAGAATTCTACTTTACGGAA---------ATAAATCCTGGCT-------TTATAAATCTGGAACGTCTGCCAT-AGGGCAGCACAATAGAGATCCACGCCCACCATTCCCCACCCCGCAAGTCTCCAGTCATAGAATTCAAGAGGTCCGAACAAAGTCAGGATCAAGTGGGACGCAATTCCCCTGGTTAACACATTTCAAGACAAAGTGTGCTCATAAACACACAACGGGAAAAGGAAAAGAAGACGTACTGCTGCTAATG--------TTGAGATGTAAGTGAGTAGTGAGTCTAAAATTCCAATATCTACTTCTTCTTGCAAACACTACACCCAGATATTTAAGAGCGCACACGCTGTCACCACACAGCACGGCAGCTCTGCTGGGCTCCCTCCATTACAAAAGTCACTCTTATTACCAGTCCAATACCACAGTGTGAGTAATGAACTTCACTGTGAGCCGTAGAGGATCACTTAATGAACAGCAATCTTACGAAATTGCTTTCCAGTAGAATGTGTTGAAGTCAGGTTGTTCCGTTTAATAACCTGCTTGGTTTATTCCGTTATTCTGTCTTCAAA-TGGTGGTAATGGGCAGGCAGAAATGATGGGAGATTCAGCATGTAAATATTACGTATTAGGTTTAAAGTTGAGC---AATGGAAGGTCACCTTCAAACACAGCA-ACACAGATGCCAACATTCCTTTACATCTCTTCTGTAATTGACAAAGTGGCAAAAGGTTGTAGCTTCAAAAA-------------CCCCAATGAAATGTGCGATAGAGAGTGGAAACCAGTCATCTTGGCCCAACTTCCCATAAATACTGCTTGGGACA---TATATATTCCTTAAACATGTGTTATCTAATGATAAGTTGATGCCTTGGTCAATTAATGTGAAC-GAAATTAACAAAAGCTCTTAAATGTATAT------ATTAATGTAT-TAAATGTATATTA a score=20390.000000 s hg15.chr12_random 273126 227 + 590431 AACATTCTACTGACATCGAAAACCTTAATTTTATACTTCAGGCAATAAAATACAAAGAATTATAAAGCTACATCCTCAAG--AATACAGGGTAAATTTAACACATTAGTGGACCAACTTTGGCAGCAAGATACCAAAATTTACTACCCAATAAGATAGTATTTTAACCAGTGTTGCTGCATAATTTATTTTGTGTTTGTGAGCTGAAAATACTTCAAAATGATGTTCTg s mm3.chr10 7651115 219 - 130738012 AACTGTCAACCATCATCACAATCCTTAGTTTTATGCTGTAAACAGTGAG--ACATGGAACTTTAAATCTTCATTCTGAGGCCAATGCAGG---CATGGGTCCCAACATTAGGCCAG-TTTGGAAACAAGGTATCAATATT--CTGACCAATCAAACAACATAGTCACCAACATTACTGAGCTATTAATTTTGCACCATTAATCTT-GCATGATGGATTATAAT-TAATA s rn2.chr7 60462648 219 + 139049774 TACAGCCAACCACCATCACAATCCTTAGTTTTACACTGTAGGCAGTGAG--ACATGGAATTTTACATCTCCATCCTAAGGACACTTCAGG---CATGTGTCAGAACAGTAGGCTGA-TTTGTAAACAAGTTACCAGCATT--CCGACCAATCAGACAACATATTTACCAACATTACTGAGCTATTAATCTTACACCTTTAATTTT-GCATGTTCAATTATAAT-TAATA a score=71857.000000 s hg15.chr12_random 273662 745 + 590431 TCATGTTCAGTTGTCAGTAATTTT-CTTCTTGGCTGCCATAGTTAAACAGGCCATAAAGAAACTTGAAGTCAGACTCAACTAGCATTTATTAAACAGAACTATTAAATATCAAGTATTGTGCTAGACTTTTCCACATAAATTG-----ATAATTCTTATGACCAACCAGATTTGGAAACCACCCTGC--AATGCTGGGCCACATAACTCCACAATGCTATGCCCAGTACCTT-CAATGATAGGACAGGCAACCTCCAAAAAAAAAGCCATCCATTTCATCGTGGCAAATTCTTCTATTAGCAAATTCTAATATTCTCTATTAGCAAATTCTTCTATAATTAAACCAAAACTGTTTTCTAAAAA-AGTCTATCCTAGCAACTCTTCTAGTATTACAAATGAGCCTTCTTCTCCCCTATATGAGAAAACAGCTATTCACAAATATGAAAAGTTACTATGTCTCCAACTTCCTGCAATTTAAACTTGtctgccccatccttgatctttctggtagcattccatctttttccttcttataatttacaactaatatatcatttgtttgttcactttttatagcttgggttcttcactaaactagggctctgtaagtccaaggatcatgtctatttt--------gtgc----accattgcacagccagcatctaaaacataacaggta--caataaatatttgatgaataaattaaAGAATAAATGATT-----TAGGTGCATATGCTTATA-ATCTTTGATTTATATCACCA-CACTCAT s mm3.chr10 7651334 693 - 130738012 TCATGTTCAGTTTTAAGAGACTTTGCAGGTCAGTTGCTATAGCTAAAGATACAATAAAGTAATGGAAGGTAAGAATCAGCTACCATTTATTAAACCAAATTATT-AATAC-GATTTGTGGATGAGCCCCTTTCACATAAATGGTAATTTTAATTCTGGTCCACAGTCAGGTTTGGAAACCAAGTGGCC-AGTGGGAAGATACATATAGCCACAAGGCAATGTCCAAGGAGTCACAAGGATATGACAAAAAGCTCTTTAAAAAAGGAGCACACAATTCACCTTGG--------------AGCG------------CTCTATCAGCAAACATTTATACACC----------CTGTCTTCTAAAAACCATCTGCGCTAGCA---CCTCAGCTCTTTCAAACAGGCCCTCTTCTCTCCGATGTGACAACACGGATCTTCACAAATATGAGAAGT---TATGTCTCC-ACTTACTTCAGTTTAAAATTGTCTGCCCT-CCTCTGACCTTCTTCAAAGCA--------------TTCTCATAATTTACAATCATGGTTTC---------------CCCTCTGCCTTGTGATCTCCGCTGGGCTT---CTCTGTGAGTTTAAGGGTTGTGACTGAGTTAAGGATTACCAC----ACCAGTGCACAGTCAGCACTTCAGTCATGATAAATATTCAAGCAACATTTTATGAATGAGTTAGTGAGCTAAGAACTAAGTCTAAGTGCATAAGCTCTCATAGTTTGGGTTCTTATTATCATCACCCAT s rn2.chr7 60462867 692 + 139049774 TCGTGCTCAGTTTTAAGATACTTT-CGGGTCAGTTGTTATTATTAAAAATATGATAAAATAAACAAAGGTAA-ATTCAGCTACCATTTATTAAACCAGATTATT-AATGTGGATTTGTTAATGAGCCCCTTTCACATATATTGTAATTCTAATTCTGGTCCCCAGTCAGATTTGGACGCCAAGTAGCCAAGTGCAAAGAAACATAGAACCACAAGGCAATGTCCAAGGTGTCACAAGGATATGACAAAAAGCCCTTT-GAACAGGAGCATACAATTCACCTTGG--------------GGCG------------CTCTATCAGCAAACATGTGTATATC----------CTGTCTTCTAAAAACCATCCGTGCTAGCA---CCTCAACTCTTTCAAACGAGCCCTCTTCTCTCCGCCGTGACAACACAGATCTTCACAAATATGAGAAGT---TATGTCTCC-ACTTACTTCAGTTTAAAATTGTCTGCCCT-CCTCTGACCTTCTTCAAAGCA--------------TTCTCATAATTGACAGTCGAGGTCTC---------------TCCTCTGCCTTGTGATCTCTACTGGGCTT----TCTGTCCGTTTAAGGGTAGGGAAGGGGTT-AGAATCACCACGCCTGCCTGTGTACAGTCAGCACTTCAGTCACGCTAAGTGTTCAAGCAATGTTTTATGAATGAGTTAATGAGCTAAGAACC-AGCCTGCGTG-ATAAGCTCTCAGGAATTGGACTCTTACTGTCATCACCCGT a score=407.000000 s hg15.chr12_random 274407 9 + 590431 TT-TTAGAGA s mm3.chr10 7652027 10 - 130738012 TTCTTAGAGA a score=235931.000000 s hg15.chr12_random 275136 2186 + 590431 ATTTACCATGCACATGTACAGAACTCTGGGTCCTCGGTTTGTTTTTGAGTTCCACGTGCACAAATATGGAGAAAAACTGCCAACAGCAGGAACTTCAAGTGAAGGAAGACAACCACATTTGACAAATGATGTATTATTATGTGACCAGTGAGAAACCTCAAGGATGCCGACAGCTCATTTTTT------ACTTAAATTTCTTTTCAGGAAAGCTCTCTAGGACTGTGAGACTCAGTAA--TTATTTTTTAATTCTCTCACCTCCAAAACACAAAGA----AATTTTTACCCCTCAAGTTAAAAAG-----CTTAACTTTGAAAATATCCTAAGGACACAACTGCCAGAAATGACTTAAGGATTAAGTCAGAAAATACTGGAAAAGCTAATCGGAAAATGTTAACTCTGTCTGAACACTCCAACTGCCCTCAGACCCTTCTTCCCACAGGCACCAGGGAAAGAAAATTTAGAATCAAGATGCAGGTGGCATACAACTGAGGAGAAAACCTCCTTTCCTAATATAAAATGTAAGGC-ATACTGCAACAACATTCCTCCGAGCCCTTCTCAGAATCAACCATCCTACCAATCATTCATACCGATAGCAAAACCAGAATAGTGTCACCGCCAAGCCAGTCAAACTGTCAACAACATTTATTATTGTGTGTACAGGGTACCAGTAAGTACCTGGTACCCTGATGAGACAAAAGG----ATGAGACAAAAGAAAAAGTCTCATCCTTTGCCCTTCGAGAGCTCATAATAGGAAGACTAATTATTT-CTGCCATACATGTAGAGCAGGGGAGTTGGAAGGCAATGAAgaaaagagcgtgagctctgcagtgagacagatcagtgatctaataccaactctataactttttagctgtatgatcttAATGATaatacatagctaaattactgagggcttaccatgcaccaggaagtttggtccataatccaccccagctaatcttcacaagccctataaagtaaatactattaatgtttcATACATAAACT--caagttatttaatctc---cctgagcctcagtttccttgaggggatg-----------gaggattaataccaactttatatcattgttttgaaagttacatgagttaatgcgtaaaaaaaaaatagcttaagatactgtagactctcagtgaatgAATACTGATACCACTATTTAATTAAATGTCTATAAAATGGCACATATTTAGAAAAATTATTCCAAGAAAGCATTTTAGATATTCGTATTTTGTTATAAATAGTCTGAACTATTTGTAAATGCAATt----taattcagcaagtatatgtattcttgctatatacaagatgctgtggcagctactgcaatacgcacaccaatatatga---caca--attttggtcattaaggagttagtaatccagGGAATTAATA------------------------------ACAGAATATATTCTATCTTAAAATTAACTCAACTAACCAAGA--CCTAAGAGTTGGCCACGTGGTGA-AATATTTTTATTCTGGAGTGTATTTTGTTATATTCT--CCACCACTGTTTTG-AACTGCAAGATGACTTTTTCCCTGAAAAATATAACTTTCTACAAGTTAAATACCA----GGTTATCTCACTAAAGTATGGTTCCTCTTGTTTTTCACATCAATATAGCATATATTTTT-ATAAACAGCTGTACCAAGTGAACACTTGCTGATTTTCAATCATCAGTATGCAATTCACTCAAT---------AAAAGAAAACAAGCAGCCAATATTCAGGCATTCTGTTTATAATGACAACCTAAACTGCCATTCAAGCTCAATACTGTCTGTTATAATTATCAGAATGAGTGGAAACAAATGATCAATAATGGGAAAGCTTCTTATTCATCTCCCATGGCAATGTG-------CTTTCAATTCCTAGTGAGATTTCCCAAGATATTTATGGAGAAATCTTCCCAGAACATTGATCTCAGCTGAAA-ATCTTATAGTTTGGGAGAATGCAGGGAATTTCCCCATGGAAATGGGGAGAGATATGATATAAGGTACTGGGCATTCCTGCAGT-AAATGAGTACTGAGCATTTATAAAATGTTTGAGAGAATTGATAACATGGACACTGTAATTAATGTGCATTATAAAATATTTCCCATCCCTCCAGGTAAACTCCATCAAA--CTATAGTTTTAAAAGCAGTTAACATACTGGAATA--ACAATCATTAGTCAAAACCCATTACATTTCATTGTGAAATCCCCAGTATTATTA s mm3.chr10 7652856 2084 - 130738012 ATGTGTCGTACGCAGATATAGAAATCCTTGTGCTGAGTTGG--TTTGAGTT-CATATGTACAAATATGGAGAAACATTGCCAGAAGCTGGAATCTTAGGAGCAGAAAGACAACTGCAATTGACAAATGACGTTTCATTATGTGACAAGCAAGAACCCTCAAGGGCACGGACAGCTCATTTTTT------ACCTAAATTCCCTTTCAGGAAAGCTCTCCAGGACTATGAAACTCGATAAACTTAAAAAAAAATCCTCTCCCTTCTGAAACACAAGAATGTTATTTATCACCCCTCCAGTTAAAAAGA----CGTAACTTTGAAAACTCCCCA--GACATAATGAGCAGCCATTGCTCCGGGTTGATATTGAAACTTACTGGCAAAGCTAATTGGAAGAAG-CAACTTTGCTGAAACAGTGTGTCAACTCTCAATCCTTTCTCAC--TAGGAACCTGGGCAACAAAATTTAACAGGAAGATACTGGCGACCTAGTTCGGAGGAAAAA--CTCTTTACCTAATGGACAATGTAAAGCAATGATGTGGTAGCATTCCT--GGGTCCTTCTCAGAACCAACCATCTTTTACATGGCTCATACAGAGAAAAA----AAAAAAAAGTCACTGCCAAACCAGTTGA---------GCCACTTATTA-TGTGTGTACAGGGTACTAGGAAGCA---------------ATACAAAGAGTATCATG--------------GTATCATCTTTTGCGCTCGAGGACCCTATAGAAGGAAAGATGAAGATTTGGTGCTGTATTCTTTGGTCAAGGACGTTGGGAtgaagcaatgaaaagagcatgggctctg--------gagatcatcaccctagccccacctctaccatattttggttgcatgatcttAATGGta----atagctaaattactgaaggctcaccatgcaccaggaggtctggtgtacaattcatcccagttaatcctcacaaaatctataaagaaagcac---------GTCATAGATTAACTCACAAGGTGTTCAATTTT---CCTCAGCCTTCGTTCTACTGGAGACATGTAAAACTAGCCAAGGATGGATGC--AGCTCATATCGTTG--------------------------------------------GGATATTGTACACTTCTAG----------------------------------------ATGTGGCAGATA-CTGGTGAGATCGTTCTA--GAGTCACTTTGGAGAGGTCTCCCTTGTCAGTCATGGTCAGAGCTTTTTACAAAAAAAAAAAAATTAAAACAATAAATGTCTGTGTGCCTGTTAAAGACAAAATTCTATATAAA--ATTGTGACATGAGCAAACAT-TAAGG---CATAACATTTCTATCACTAGGGAGCTTGTAATCCAGAGtgtgtgtatgtatgtatgcatgtatgtatgtatgcatgcatgtatgtatATGACCTTAAAATGAAGGCCATTAATCAATATCCTGAAGATCAGGATACGTGATGA-AATATTCCTATTCTAAAGTGTGTCCACTGACATTCTGATCACTGCTTTTTCATAATTTCATGATAG-----TTCCTGAAAATGGGGTTTTTCAGTAAGATAAAAAATA----TGTAATCTTCACAAAGCATGGGTACT-TTGTTTTTCACATTCATACGGCATGTGTTTTTCATAAACACCTGTACCAATTGAACATATGCTGATTTCAAATCACTGGCATGCAATCTATCCCATAAAAAAAAAAAAAAAAGACAGGCAGGGAGCACTCAGACCCCCTGTTTATAGTGTCAGCCTAAACAGGCACTCAAACTTGGGC---TCCATTATAATTAGAGGGACGAGTGGAAAAAAATATTTAATGACAGG-AAGCTGCTT-TTTATCTCACATGGGAAAAAAAAAAAACCAGTCAACTCCAAGTGAAATTTCCTGAGGTATTTTTTGTGAACTCTATACAGAACATTGATCTCAATTGAAATATCTTATCATTTTGGAGGATTCAGAAAGTTTTCCCTTGGAAATGGGAATAAAT---ATACAACCTATTAGATATCTCTGCTGTAAAATTAGTATTAAGCAGGAATAAAAAAATTGAAAGGGTTT------TAGACACTGTAATTAATGTACATTGTAAAATCTCTCTCAT-CTTACAGGGAAGTACTATCAAA--ATATAGCTTTGATATCACCTTATTTACTGAAATATTATAAATGTTAGTCATAATACATTACACGTCATCACCAAA-ATTCAGTATTACTA s rn2.chr7 60464783 2044 + 139049774 ATGTGTCCTACACAGATACAGAACTCCTTGTGCTGAGTTGG--TTTGAGTT-CATATGTACAAATATGGAGAAACATTGCCAGAAG-TGGAATTTCAGGAGAGGCAAGACAACTGCAATTGACAAATGATGTTTCATTATGTGACAAGCAAGAACCCTCAAGGGCACTGGCAGCTCATTTTTTTTTTTTACCTAAATTCCCTTTCAGCAGAGCTCTCCAGGACTATGAAACTGTATGAACTTAAAAAAAAATCCTCTCCCTTCTGAAACACAAGAATGTTATTTATTACCCCTCTAGTTAAAAAAAAATCCGTAACTTTGAAAACTCCCCA--GACATGACTAGCAGAAATTGCTCTGGGTTGATATTGAAACTTACTGGCAAAGCTCATTGGAAGAAG-CAACTTCGCTGAAACA--CTGTCTGCTCTCAGTCCGTTCTCGT--GAGGCACCAGGGAAACAGAGTTTAACCTGAAGACACAGGTGACCTATTACAGAGGGAAAA--CT-----CCTATTGGAAAAGGTAAAGT-GTAGTGTGGCAGCATTCCT--GGGTCCTTCTCAGAATCACCCATC-TTTACGTCTCTCGTACAGAG---------AAAAAAAAGTCACTGCCAAACCAGTTGA--------CACCACTTAGT----TGTGTACAGGGTACTAGGAAACA---------------ATATAAAATGTGTCATG--------------GTATCATCCTTTGTCCTCAAGGCCCATTTAGGGGAAAGAATGATGATTTGCTGA-GTGTAATTTGGTCagggacgatgggatgaagcaattaaaagagcatgcgctctg--------gagagtggcaaggtaaccccgcctctatcatgttttagctgcatcaccttAATGATA----ATAGCTAAATGACTGAGGCCTGATCATGCACCAGGAGGTTTGGTGTACAGTTCATTTCAGTTAATCCTCGCAGTTCCTATAAAGTAAACAT---------ATCACACATCAACTCACAAGGTGTTTCATTTGCGACCTGGGCGTGGATACTGACCGTAACACATCACACTAGCCAAGGACAGATAC--AGCTCACATCGTTG--------------------------------------------GGATAGTATGTACTCATCC----------------------------------------ACAGGGCCGATA-CTGGTGACATTATCCTA--GAGTCACTCTGGAGAGCCGTGCCTTGTCAGTCATGGTCAGAGCTTCTTACAAAGGGGATG----TAATATGGTAGATGTCTGTGTGCCTGTTACACACAAACTCCTATATAAA--ACTGCCAAGTGAACAGACATGTAAGACATCATAATATTTCTACCACTGAGGAGCTTGTAATCCGGAGGATTTCCA---AGGTA---------------------------ATATATATGACCTTAAAATGAAGGCCACTAATCAATATGCTAAAGGTCAGGGCACGTGATAAGAATATCCCTATTCTAAAGTGTGGCCACTGACATTCTGGTCGCTGCTTTTTCATAGTTGC---ATAA-----TTCCTGACAGTGGGGTTTTTCAATAAAGTAAAAAGAAAAACCATAATCTGCACACAGCGTGTGCAGTCTTGGTCTTCACACTCATGTGGCATGTATTTTTCATAAACACCTGTACCAGTTGAGCATATGCTGATTTCAAATCCCTGCCATGCAATCTGCTGCAT---------AAAAAAAGACAGGCAGGGAGCACTCTGAGCCCCTGTTTAGAGTGTcagcctaaacaaccactcagactcgggc---tccgttataattagagggacgaatgggggaaaa---ttaatagtagg-aagctgctt-tttatctcgcacaggtataaaaagagaccagtcgactccaagtgaaatttcctgagatattttttgtgaTCTCTACTCAGAACATTGATCTCAATTCAAAAATCTTATCA-TTTGGGGGATTCAGAAAATGTACCCTTGGAAATGGGAATAAAT---ATACAACATGTTAGATATCTCTGCTGT-AAATGAATATTAAGAAGGAATAAAGTATTTGACGGGGTTCAT--TATAGACACCCTAATTAATGTACGTCATAAAATCTCTCTCAT-CTTCCAGGAAAATTCCATCAAAATATATAGCTTTGATATCACTTGATTTGCTGAAATATCATAAATGTTAGTCAAAACACATTTCACTTCATCATCAAA-ATTCAGTATTATTA a score=22496.000000 s hg15.chr12_random 280034 183 + 590431 agtagttgcaatagagacagtatggtctgcaaatcctagaacacttactaaaacagaaaaaggttgctaatttctATACTA-AATACTGGGAAAACAAGA----GGTCTAATTATGGAGACGAACAGAGAAACAGATCTATACAATTCAGTATGATAAGTACTATGGTACAAGTAATCTCATAATATT s mm3.chr10 7656999 181 - 130738012 AGTCATTGCAACAAAGTCAACACGGGTTGCAAAACCTATTTAAGTAGCTAAAGCTGAAACAG------AATTTCTGTTTCTTAACATTCAGGAGACAAAAACAAGGTCTAATTGTGGACATGATCTAGGAACTCAACCCATATAAGTCAGTATGTTAAGTCCTG-GCTGCAGACAATCTCACAGTGCT s rn2.chr7 60467527 180 + 139049774 AGTCATTGCAACAAAGTCAACATGGTTTGCAAAGACTACAAAAGTAACTACAGCTAAAACAG------AATTTCTGTTTTGTAACATTCAGGAGACAAAT-CAAGGTCTAACTGTGGACATAATGGAGGAATTCAACCCATACAACTCAGTATGTTAAGCACTG-GCTGCAAATAATCTCACAGAGCT a score=41817.000000 s hg15.chr12_random 280486 661 + 590431 TT----------TTTTTTTTCTGTCTTTGTACAATATTTTATTAAAGATCTTTACAGAACAACATCCAGACTCCAGAATACAGCTGCCAAGGAGACCCTGTTACGCTGTGGGGACTGGCTGGGTGACGGCAGGCGGTTCTGGCTTCCCACCCTTCTGTTCTGAGATGGGG-TGGTGTGCAGTATCTCATCTTTGGGTTCCACGATGCTCACGTGGTCAGGCAGGGGCTTCTTAGGGCCAGTCTTACCAGTTGGGTCCCAAGGCAGCATGATCTTCACCTTGATGCCCAGCACACCCTGTCTGAGCAACACATGGCACATGGCAGTGACAATGTAATAGTTAACACGGTCTCCGCTGTGGATCATCAGGCCATCCACAAAACTTCATGGATTTAGTCCTCCGTCCTCGGAGTTTCCCAGACACCATGACCTCACAGCCTTTGGCCCCACTCTCCATGATGAATTGCAACACACCATGGCAGGCCCTCCTCACAGCAAGCCCTCCTAGGAGCTTGTAACGCAGAGACTCTGCCTGGGCAATGG--CACAGACCCCTAGCGGCCACCTTATCAGCATAAAGCTCTACACTGCCCTCTGGAAAACCAAACCTCTTCTCAACTGCAGCAGTCAGTTCCCCAACCCACTGGCCCTTCTCACCAAGAACATTCTGTGTTCT s mm3.chr16 76172419 669 - 98986639 TTACACGTATGATTTTTTTTTTGTCTTTGTTCAAGATTTTATTAAATGTCTTTACAAGGTAGCATCCAGCCTCTAGA-TGCAGCTGCCAAG---ACCCTGTTATGCTGTTGGCACTGGCTGGGGCATGGCCGGTGGCTCTGGCTTCCCATCCTTCTGTTCGGAGATGGGGGTTGTGGGCAGGATTTCATCTTTAGGTTCTGCGATGCTCACATGATCAGGCAAAGGCTTCTTGGGACCAATCTTACCACTTGGGTCCCAGGGCAGCATGATCTTCACTTTGATGCCTAGCACACCCTGTCTGAGGAGCACATGGCGCACGGCTGTGCCGACCTAGTAGTTAACAGGGTCTCCACTGTGAATCATCAGACCATCCAC-AAACTTCATGGACTTGGCCCTCTGTCCTTGGAGCTTCCCAGACACCACAACCTCTCAGTCCTTGGCCCCACTCTCCATAGTGAACCGAAGCACACCATAGCAGGCCCTTCGAACCCCAAGCCCCCCTAGGAGTTTGTAGCGTAGAGACTCTGCCTGGGCAATGGCACACAGACCTCTTGTGGCCACTTTCTCTGTATAAAGCTCTACACTGCCTTCAGGGAAGCCAAAGAGCTTCTGGCCAACTGTGGTCAACTCTCTGATCCAACGACCCTTCTCCCCAAGAACATTCTGTGTCCT a score=8965.000000 s hg15.chr12_random 281147 38 + 590431 GGTGGCTAAGATAATGATTTCTGTCCTGGTTGGTGTAA s mm3.chr18 57285394 38 + 91041441 GGGGGCTGAGATAATGATTTCTGCCCTGGTTGGTGTAA s rn2.chr18 48696473 38 - 82509072 GGTAGCTGAGATATTGATTTCTGTCCTGGTTAGTGTAA a score=35662.000000 s hg15.chr12_random 281185 369 + 590431 AGGAAAGGCTTCTAAAACTGGATTAGATAAAATTTAgagaccaagcgatgaagagccttacatgtcctgctaaagacttccaatttcatactgaaggcaacggcaagcctttgatgggttttaagaaggtctatgacatgatcagttttatattttaaaatggtgatcctagAAGAAATGTATATAATTATATGTAATG-CCATTTTCTTCCATAGCAAACACAACACTGGGATGTAAGGATTATTTCCTCTAAGAAGAATTAATTATCATTCCTGTCAGGCA---------ATCATTCACTTTTTCTCTCTtaataaaataataataataacaataataGctagtactttttgag--tgttaccatgtgccaggaacttg s mm3.chr10 7657215 336 - 130738012 AGGAGCGGCTTCTGTAATGGAGTTCGGTAAGCATCAGAGGT----------ATAGCAT-----------CCTGAAACCCTCCATTCCACTTTAACGACAACAGGACACGGTTGT----TTTTAGGAGTGCCTGTGTCACTGTTGGTTGTATATTTT----TAGTTATCCTGGCTGAAATATATCTGATTGCACTTCATGACCCTTTTGTGAAACAGGAAACACAACAGTTGGGTACA-----TATTTGCCCCAGGAAGAACTAATCTGTGTTCCCATGAGGCACCCACCATTCTCACCCATTTTCTCCCTTGCATTAAAACAGA---------AACAATTGCAGGCACACACTGAG--CAGTACCCCCTGACAGGTACTTG s rn2.chr7 60467749 358 + 139049774 AGGAGGGGCTTCTGTAATGGAGTTAGAAAAGCATCAGAGGCCACACAGACAAGAGCTTTAGATAT--TACCTGGAACCTCCCATTCCACTTTAATGACAATGGGAAACGGTTGG---GTTTTAAGAATGCCTGCGTCACTGTTGGTTATAAATTTT----TAGTTATTCCGGCTGAAATATATCTGATTGTACTTCGTGACCCTTTAGTGAAACAGGAAACACAACAGTTGGATACA-----TATTTGCCCCAGGAATAACTAATAGTTGTTCCCATGAGGTACCTACCATTCTCACCCACCTTTTCCCTTGCAATAAAAGACT---------AATGAGTGCTGACACACACCGAGATCAGTACTTTCTGCCAGGTACTtg a score=7374.000000 s hg15.chr12_random 281554 209 + 590431 ctaagtgcttcagtgta-ttaattcattcaatcctcacTCATATAATCTGAGCAAGCAATTCTTGTCGAACTGGGTACTTAAAATAATGTAATTAGATTTAACCCTTTTCTGGATGAAAACCTTTCTAGTG-CTCAAATCACATATTCT---TGTCTGCTCTTAGGCAAATGTACTGAACAGCTGTAGCATAAACTTTAACTCCCTTCGTCAAG s mm3.chr10 7657551 211 - 130738012 AAAGGGGCTGTTGTGAAATCAACCCATTCTGTCCTTATTTATATAACTTGTGACAGTAATTCTTGTTCACCCAGGTACATAGAA--ACATGATTGGGTTTAACCTTTTTCTGGATGAATACATTTCTTGTATCCCAAATTTTATATTTTGTTTTTCTGTTCCTAGTTGAATAGATGGAATGGTAGTCCCATAA-CTTTAACTCCCTTTGTCAAG a score=87835.000000 s hg15.chr12_random 281763 1048 + 590431 CAAGACAGATAGTTACATAATCACTCGtttatccactccgattattgactgagtgtctatcatgtgccagtaactgtgctgggaagatatgagtg-tataccagcaagtagttctcattcccaggggttcccatggctgaatgaggggagcaaccataccagcaatcacaaacctgaaccacagTCACTGTTT-CCCCCTCTGCCTAGGATTATACTGTTGGATACATCTAATATTTGAAATTCTTATTAAAATATTTACCTACTAAGCAGTTTTGTGAGTTGATGTTCTGGTAAGAGAGAGAAAAAGACAGTGAGAGACAAAGAGAATCAATGAGCATTAGTGATGAAAATGAAGCCAAGAAAGACAGAAATCACGGGTTCATAGAGAGCCAAGGATTGGTATTTCG-GCCTGTTTTCCA--ATAGCAAAATGAATGAAATAACAATGGATTGTTACCTGGAGTAACTAGGTTGGAAGTGGAGGGAAAGGGGCTTAGTGAG---GGGAGGGTGAACAGCTACTGTGTGGACAAGAGGTGGACCTCCCTCTGTGATATGTGGCATTTGCCTTGATTTATGCTATAAAAGGTGCAGGAAATTT-TTTATACATCTAAATA-----------------------------------------TTTTTTCTGTTAGATAAACTTTCTTTTGAGTTCAGATCTAAATTTAATAATCATATA-------TACATCTAGGATATAGGATATACTATGCTTTACAGGCTGAATAACTTTATTGGAAAATTAGATAAAATCAGATA--AAACAAAGAATTTGCCGTTTTACTGGAGCACTGCACAAAC--TACAAGGTTCACAAACCAAGACTTATGAACCATGAGCTTAAAATCATGATTTTGTAACTAAAAAGATACTGAAGTGTATCTGGAATTTCCTCTAAATTTCCAACAGCAGCAACATAC----------CTCT--------------------------------------GAGCTTCACCAG----AAATCAACACAGAGAGGGAATGATGGCATTTTGTAGTTCTTTACTTTTTCAATTCACCTGAGATGGACAGCTTCACTACTGCATCTACTCCT------TACAGTCTGAACTTGACATGCTGTCGAATGGAAGGAGAAAAA s mm3.chr10 7657762 1061 - 130738012 CAAGACAGGCAGTTGGATAATAACTCCTTCATCCACAAACATTATTGACTGTACGTCTATCATG---------CTATGAAGGGGCAGCACAGATAATATGCTGACAAGTGCCTGCTGTGTCTTGGCATCCTTGGGG------------AGCAAATGCATGATAAATCTCAGACCTAAACCACAGTC----TCTATTCCATCAATAGGAGATGACATGTTTGCTAACACCTAACTCCTAAAAGTCTTATTAAAGCATCTACCTTCTAAGTGGCTTTGTGGGTGCATGTTCTGGTAAGGGG-GGGAAGAGGTAGAAAGAG--AAAGGAAAGGAATAA----TGGAAATCATAACAAAGCCAAGAGAAATAGGAGTCAATGTTTCACAAAG---------------------GCCTGTTCTCCCCTGTGGTGATACTGAAGAAAGAG----AGATCATCACCTTAGGCTACTAAGTTAAGAGTCTGGGGAAAGGGAAAGAGGAAAAGTGGCCGGATAGACAG-------ATGGGTGGGAGTCTGACCAC---CTGTAAAATGTCACACGTGGCTTGAATTCGATTATAAAACGTACAGGAAATCTGCTCCTCCTTCTAAAGAAGCAGGGGGTTtttgtttgtttctttttgggtttgggggttttttgtttgtttg----------tttTAAGTTGAGATCTAAGTTTAGTAGTTATATAGCTTTTGTGTATGTAGA--AGAGGAGGTACTGTGTTTTATAAGCTCA--GAGTTTACTGGGAAAATAGATAAAATGGCATGACAGACATGTGA-TTGCCATTTTATTGGATCAAAGCCCATACAGCATAGCGATACCAAACCAAGACTTATGGGCCGTAAGTTAGAAAACATAATTTT-TAACCAGAAC-ACTCTATAGTATATCTAGACTGTTCTATAAATTTTGCGTACCAGTAAAGTTT----TTTGGTttttgttgttgttgttgttttactttgttttgttttgttttTGAGATTTG-CTGGGGGGATAAAACCTGGAGAAGGAATGTCAGA-----GCACATCTGCA-TTTTTCAATGCATTCA--------AGCTTTACAATGGCATCCATTCCTATTCCTTGTAATCTGAACTTCAT---CTGCCACATGGAAAGAGGAGAA s rn2.chr7 60468469 1000 + 139049774 caagACAGGCAGTTGGATAAGAACTTGTCCATCCATAAACATT---GACAGTGTGTCTATCATG---------CCGTGAAGGGTCAACATGGGTA-TACACTGGCAAGTACCTGCCATGCCCTGGCATCCTTGGGGCAGCATTAAGGGAGCAAATACATGATTCATCTCAGATCTAAACCACAGTCACTATCTACTCCATCAACACAAGACAGCACGTTGGGAAACACCTAATTCCTACAAGTCATATTAAAGCATCTATCTTCCAAGTGGTTTTGTGGGTTCATGGTCTGGTAAGGGGTGGAAAGTGGTACGAAGAG--AAAGGGAAGGAATAA----TGGAAATCATAACGAAGTCAATAAAAATAGGAGTCAATGTTTCATAAAGACC-----ATTGGTATTTCGAGCCTGTTCTCCA--GTGGGAAAACTGAAGAAACAA--------------------------------------GAGAAGAGAGGAATAGGGAAAGTGGACAGGCAGACAG-------GTGGGAGGGAGGCTGATC------TGTGAAATGTCACATGTGGCTTAACTTCTATTATAAAGAATACAGGAAATAAACTTGTCCTTCTAAATAAGC---------TTGTTTGTTT--------GTCTGTGTTTCTTTTTTTTTTTAG----------TTC--------------AGTTTAATAATTACACAGCTTATGTGTATTTGGAG-AGGGGAAGT---GTGTTTTATAGGCTCA--AAGTTTATTGGAAAAATAGGTAAAATTGTATGACAGACAAATAAGTTGCCATTGTATTGGATCAAAGCACATATAGCATAGCATTACCAAACCAAGATTTATGGGCTCTAAGTTTGAAAACATAATTTT-TAACCAGAAC-TTCCTATACTATATCTAGACTATTCTTTGAACTTTGCATATCAGTAAAGTTTGGTttttggttttt----------tggttttgttttgttttgttttgttt--GAGATTTGTCAGGGGAAATAAAACATAGAGAAGGAATGTCAGA-----GCACATCTGTA-TTTTTCAAAGCATCCA--------AGCTTTACCATGACAATCATTCTT------TGCTATCTGAACTTCAT---CTACCACATGAAAAGA------ a score=68741.000000 s hg15.chr12_random 282843 651 + 590431 AAAAACTTCCCATATATAATTTTCTCTCAT-TCAATGTTTTTCTTCTGCACG-TCA---TCTTTAT--CCTCAG----------TTATGTTATTAG----------AAGACTTATAGGAGAGTTAAATAGGCATTTGTTAAGATTGTGAAAAGTCGAAAG-TTTAGATAACT-TTGAAAGATTCTTTTTGTATCTGATTTAATTGCAAGTTTTTCAATATTGGAATCGGTTGCCTTACCTCT-ACTGCTTGAAAACACTCTTTGTTCCTATTTCTCTTGCATGCTTCCCATTTGGAGATATTTTCTGCATCAGGCAGATT--------TCTTTCCCCTCTCATCCCAACAAAATCTGGTATTC-AGGAAAGTCAGTAAACAGCTCCATGATCTCAGCATTCATTCTCTTTCATTTTCTGTGTATTCTTGATATATGCTATTGGAAATAGAGT-GCCCCAAAATCCACCGTATAAGTAACCTGACTGTAGTATATTAATAGAAAATGAACTCTCATGGAAAGTTAGATGAATAGTTGCCTGGATAGAGATATAGGTCCTATT--GTTCATACCTTCTTCTAAAATGATTTAGTGATAATGTCCAAAATGCCTATTGTTTGGTTAGAGCCCAATCCCTGCAGATTGGTTTTGCTTTGCAGCTAGACAAAGTTAATGTCCCATATGAGAAACCATT s mm3.chr10 7659260 660 - 130738012 AATACCTTCTCACATGCG----CTTCTCAA-TTATTCTCTTCATCCCACATGACCACCATCTTTATTGCCACAAGGGAAACAATCTACTTTAGTAGCTACTTTACAAAAATTTATAGAAGAGCTGGATAGATGTTAGGTGAAATGGTGAGACTTCAGACGCTTTGGTTCGTTTCTAACATGTACTTTCC-TGTCCGACTTAATTGCAAGTTTTCCA------------ATTATCAGTTCTCTCACTGCTTGAAAAGGC----TGTCAGAGTTTGTCTTACAAACTGCCCAGGCAGATGCATCTTCTGCAGAATGCAGATTACCTCCTCCCTCTTCTCCCTCATCC--------TCTGTGGCACTAAGGTGGTCAGTAAGTAGTTTCATAATCTCGGGATTCATGTTTCTTGGTTTCCTACAAAGATTTAATATATACTGCTGACAGTACATTCACCCTCAAAGCCACAGCATAAGAATCCTGACTCTACTGTGCTCATACAAAATGAATGGCCCAGGAGCTACAAAAAAATGGTTGCCTTGGCAGAGATACATGTGCCACCAAGTCTAATACTTCTTCTAAAATGATGCTATGATCGTTCTCAAGGTGGCTACTGCTTGATTAGAGCACAACCTCTGGAGGC---TTTCATTTTGCAACTTAATGAAGCAAACATCCCACACGAGAAACCATT s rn2.chr7 60469901 658 + 139049774 AATACCTTCCCACATATATTTACTTCTCAGGTTTTTTTCTTCATCCCACATGACCG---TCTTTATTGCCTCAAGGAAACCAATCGACTTTAGTAGCTACTCTACAAAAATTTATAGAAGAGATAGATAGATTTTAGGTGAGACGGTAAGACTTCAGACGCTTTGGGTAGTT-CTGACATGTGCCTTCT-TGTCCGACTTAATTGCAGGTTTTCCA------------GTTATCTTCTCTCTCGTTGCTTGAAAAGGC----TGTCAGAGTTGGTCATTCAGGCTGCCCATGCAGATGCATTTCCTACAGAATGCAGATTGCCCCCTGCCTCTTCACCCTCACCC--------TGGGGTGCACTAGGGTGGTCAGCGAGTGGCTCCATAATCTCAGGATTCCTGTTTCCTGGTTTCCTACAAAGATTTAATATAGATACCTGGCAGTGCAATGGCCTCCAACGCCACAGCTTAAGAGTCCCATATCTACTGTGCTTATACAAAATGAATGGCCCTGGAGATAGAAAAAAATGGTTGCCTAGGTAGAGATATACGGGCTGCCAAGTATAATATTTCTTCTAAA-TGATGCTATGATAATTCTCAAGGTGGCTACTGCAGGCTTAGGATGGAATCTCTGGAGAC---TTTCATTTTGCAACTTAATGGAGCTAATA--CCGTATGAGAAGCCATT a score=235125.000000 s hg15.chr12_random 284482 1952 + 590431 CTGATTTCT----AATGAAAAGCTAATCTTTGACAGCCCTTCTCTCAGTAGGAAATAGATTTTTTAAATATTATGGACTGTTTGTACTTAAATGAAACAGTTTCTGCATGAAATCTATCATTCATATTTAAGCAGAGTGGGTAAAATTTA--GTCAGAACATTGGATGGCTATTGTTTTACAATTG--CTATTGTAAAAATAATAAACTCTG-TTTTAACTTGCTTTGTGTAACACT---TAGTAGAGGATAAGCCTTGCATTTTAAAGGCATCTAATAATGAAAAAGA----TGTCTTATAAGAA-AAATTAGGACAATTCAAATTTTGTATTCTAGCTCTGATTTTTGCAAATTGCTTGCCCCATCTTAATTACAATGCATACTAGAGTTTTTAC-CTAAGGaaaaaatatatttaataaaaatattGAGCACCTACCATAT-----------------------GTACTGCAGA-GGAACCCAAAATAAAGAAGTAGTCAAGACGAAA-------TTAACTGGTAATACACACTAACATGGCAAACAACCAACCCTG-TTCATTTTTTATACCATATATATTTTAGTACATGCAGGAACCCAATCAATGAGGATCGTTAATAATTTAAATTCCAAGGG-----TAAAAAGAAGCCTACTTAAAATATAA----TTGGAAGAGCTTTCACATCATCCTGTTTAGATGAGCATAAACATTAACCATGAAAAGGATTAATTAAAATGAGTTTATTGTCTTTCTCTAACCCTCTGATACACTAATGTTGAAATGGAAAGGTTGCTAAGGTGTTCCACTGGTGTGGTTTCCATT-------CCTCACT-----------------------TGTTTCAGAGATTT-ACCTGAATAGATATCCAGTCAGAGTCACGTAAAGAAGACAGAAAGAAAAACATAAGTTCCTTTGAGGTTTGCCCTTAAAGCGCCCCTGCTTGGATTCCCC--ACAAGACACAACAGGGCAAACCCATGATGGATTTGCTTTTTTCTTGCTGATACAAACTTCTAAACTTCCAGGTTCTTGGCAAAACCTGGAAACATCTCTTGTCACTAGAACAAGAAGATCTGCTTCTTGGTCTGATTCT--CTTTCCGACTCCAGCTCAACTTGACCTTTCATGATGTACACTTCCTTGTTTTTCTCACAAACAGCTCTGATTCCTCTATCAGCTGGCAGACAGTGCTCA-TTCTGTCCAGCTTTGTTTTGGTTTGCAGAGCCTGGGAGACAGTCTATGTT--TTGAATTTGCTGAATAATGCTATTATTTGGTTTATTCTTTGTATCTTCTATTTTTAGCAAAGGTTTCCATTTCTAAAAATACTCAAAATTATGATAAATATTTTGGGGATTTAGAGTTTAAACAAAATGGCTTCAACAAAAGAAAGCATTTGGAATTGTAAATTTGCATTTAAACGCTTGACCATGCTGGTATCACTTATGCGGCAATATTAAACAGCATGAGATAAATCAGAACACAGCTTGAAATTATAGGCCTAACTTATTTGATTTCATAATAATTTTAGGGTCTTTCCTTTAAAAATCAACAGCTCGAAGACGTATTTTTT----------CCCAGCGAATTCTCTTCTCTTTTTGAATAATGACTCTCCCATGGGTCACAGAATGGCATATATAAAAGCACTATTTCT---ACAATAATTATTCCTAATTTTTAAATTTAGCTAAATAACATCTGCCAGATATTTATAAGTATAAAATTAGACAAAGTCATTTAACTGAAAGCAAACTAATTTAAAATATGTAAATGAAAATGTTCTATGCTGGACCAAGGATTTGCATATAAGTTACTATTTTGAAATGCACTTGTGTGATTGCAAGATAAAGAATTAACATGCAGCATACAGCCCTTTAGCATAGCCCTAGAAAAAGGAAAGGAACTAAGAACATAATATTCACAGTCAAACAAAT----------------------------------------------------------TAATAAACTGGAGTATTGATCATGGGAAAGTGGAGTTGTGGAAAGAAAAGCTACTAGAGAAGATTCA-ATTATTCTCAAAAGAAATCATA s mm3.chr10 7659920 1978 - 130738012 CTGATTTCTGCATAATGACAAACTAA---TAGACAGACAGCCTCCTGTCAGGA----------------------------------TGGCAGGAAACCGTTTCACCATAAAGTGTGTCACGCGTACCCAAGCAGAACATGTAGAATTTT--GTAAAAATTTT-----ATTGCTGCTCTTCATTTGGCCCATTAT---TATTTTTAAATCCATTTTTAATTTGTTTTGTATTATATG-----TGAAAGAGTGAGCGTCACACTTTTAAAGCATTTAACAATAACAAAAGAAATTTTTCTATGGTAAGAAATTATAACAAGTCCAGCTTGATTTTCTAGCTTTGATTTGCACAGACTG-GTGC-AAATC----TTACAGTTCAATCTATAGCTTTCCC-CTAGAAGCAAGTTATGCTGAAAaacaacaac-aacaacaacaacaacaacaaAACCTTTGCAAACTTGAGTAATAGATA-AAAACCCAAGA-AATGAATTCCTCTG-GCGAGACCCTCAGTTGGCTCTTGACATATATTAATAGAGGAAACAACCAACTCTGCTTTGTTTCCTGTACCTCACATATACCAGTCCGTACAGGTATCTGCTGAGTGAGGTTCCTTAAAGACGTACATCCTGAGAAGCTTCTCAAA------CTCCTAAAAGCGTAACAATTCAGAAAAGGTTTCAGGTTGTCCTTTC-AGATGAATGATAATAATAACCGTGTAAAGAATTAGTTAACATTCACCCATT-TCTTTTGCTATGCCTTTGAGAAAACGTATATGAGA-GAAGGCGTTGCCAA-GTGTCCCATTGATGTGATTTTCTTGGTGTGA-TCTCATTGACGTGATTTGCTCTGCTCGCACTGTTTCAGAGGCTTTACCTGACCAGATATACGGATGCAGACA---AGGAAAGACAGCAAGCTACAGA-AAACGTCTTCAGGACCTGCCCT----ACTGCCCTGTACCAGTCCTCCGGAAAAGGTACAGTAAGGT-AACCCTCAAAAAATGGGCTCGCTTCTTGCTCACG--------TGACTTTCCAACCTCTTGG--------GAAAACATCCCTTATCAGTAGGATAGGC-GATCTACTTATTGGTCTGACTTTCTTTCTCCACTTCCTGCCCAACTTGACCTTTCAGGTCGTATACGTCCTGTCTGGACCTACAGAGACCTCTGATTC--CTGTCACCTGGAAGAGAAGGATCATTTCTGCCCGGCTTTGCTTTGGTTACTGGGATCTGGGAAAGAGTCTATGTTTCTTGAGTTTCCTGAATCACACCA---------------TCTCTATCTTCTGTTTCCATCAAAAGTTTCCATTTCAAAGGCTACTCAAAATTGTGATAAATCCCATGGGGATTCCAGGCTTAAACAGAGCAGTACCAACAAAGAGGAACATTTAGAACTATAAATTTGCATTTAAATGCTTGACCGTGATGGCTTCATTTATGTAGCAGTATCAAACAGCACGAGGTACATCAGAACACAGCTGGAAATTATAGTTCCAGCTTATTTGATTTCATAATAATTTTAGGGTCTTTCTTTTCAAAATCTATAGCTCAAAGACATGGTTTTTTTTTTTTTTTCACAAGAAATTC-CTTCTCTTTTTGAATAATGACTCTCCTATGGTTCACAGAATGGTCTATAC-AGGGCACTGCTTTG---ATAATAATTATTCCTAATGTTTAAATTTAGCTAAAGAGCATCTGCCACATATTTATAAG------ATTCAACAAAATCATTGAACTGAAAGCAGGCTAATTTAAAATATGGAAATTAAAAATTCCTAGGCTGAAGGAAGGATTTGCATAAGTGTTACTGTTTCAAGTTGTATTTGTGCGATGAACAGATAAAGAATTAACATACAGCATGTTGCTCTTTGTCATGGCCCTAGAAATCAGAAAGGGAATACAAGaataatatttatgattaaacaaataataaattaataaataataaaCTAAACAGCCAATT--------GATAAACTAAAGA-TTACTAAATTTGAGTGCTGTTCACAGAGCACTAAGGTAGTAGAGAGAA--GGTACTAGAAAAAAA----ATTATTCTGAGGAAAAGTTGTG s rn2.chr7 60470559 1932 + 139049774 CTGATTTCTGCACAATGACAAACTAA---TGGACAGACAGCCTCCTGTCAGCA----------------------------------TGGCAGGAAACTGTTCTACTGTAAAATACACCATGTGTGCCCAAGCAGAGCACGTAGAATTTTTTGTAAAATTTTT-----ATTGCTGCTTCTCATTTGGGCCATTAT---TGTTTTAAACTCA--TTTTAACTTGTTTTGGATTATGCACTGCATGAAAGAATGAGCGCCAAGCTTTTAAA------------------------TGTCCTATGGTAGGAAATTATAACCAGTCCAACTTGATTTTCTAGCTTTGATTCGTACAGACTG-GTGTTCCACC----TTACAGTTCAATCTATTACTTCCCCTCTAAAAACAAGCTGTGCTTAATAACAATAAC-AACAACAAAAAAAA---------------AAAACTCAGTAATAGGTACAAGAAACAAGA-AATGAGTCCTTCTGCTCGAGAAGTTCACTTGGCCTGTGACATGCATTAATAGAGTAAACAACCAA-TCTGCTTTGTTTCCTGTACCTCACATATACCAGTCAATGCAGGTATCCACTGAGTGAGGTTCCTTAAAGACATA--TCCTGAGGAGCTTTTAAAG------CCCCTAAAAGCATAACAATGTGGAAAAGGTTTCAAGTCATCCTTTTTGGATGCATGTTAATACTAACCATGTAAAAAGTCAGTTAAAATTCATCCCTT-TCTTTTGCTGTTCCTCTGAGAAAATGTTTATGAGA-GAAGGGGTTGCCAA-GTGTCCCATTGGCGTGGTTTTCTTGGNGTGAATCTCATTGATGTGATTTCTTCTGCTCACCCTGTTTCAGAGGCTT-ACCTGACTAGATGTGTGGATGCAAA-------GAAAGACAGCAAGCTACAGA-AAACTTCTTTGGGACCCATCCT----GCAGCCTTGTACNAGTTCTCCAGAAAAGGTACAGTAAGGT-ACCCCACAAGAAATGGGCTTGCTTCTTGCTCAGG--------TGACTTTCCAAGATCTTGG----------AAACATCCCTTATCAGTAGGAGACAC-----------TGAGTCTGACTTT--TTCTCCAGTTCCAGCCCAACTTGACCTTT-AGGTCATATATTTCCTGGCTGGTCCTACAGATATGTCTTATTC--CTGTCATCTGGAAGAGAGTGGTCATTTCTGCCCAGCTTTGCTTTGGTCTCTGCGGTCTGGGAAAGAGTATATGTTTCTTGAGTTTCCTGAATTATGCCA---------------TCCCTGTCTTCTGTTTCCATCAAAAGTTTCCATTTCAAAGGCTACGCAAAATTGCGATCAATCCCATGGGGATTCCAGGCTTAAACAGAGCAGTGCCAACAAAGAGGAACGTTTAGAGCTATAAATTTGCATTTAAATGCTTGACCTTGATGACTTCATTTATGTATCAGTATCAAACAGCACGGGGTACATCAGAACACAGCTGGAAATTATAGTTCTAGCTTATTTGATTTCATAATAATTTTAGGGTCTTTCTTTTCAAAATCAATAGCTCAAAGACATGGTTTTTTTTC------CACAAGAAATTCTCTTCTCTTTTTGAATAATGACTCTCCTACGGTTCACAGGATGGTCTATAT-AGGGCCCTACTGTAGGAATAATAATTATTCCTAATGTTTAAATTTAGCTTAACAGCATCTGCCACATATTTATAAG------ATTAAACAAAATCATTGAACTGAAAGTGGGCTAATTTAAAATATGGAAATGAAACATTCCTAGGTTGAAGAAAGGATTTGCATAGATGTTACTGTTTCAAGCTGTATTTGTGTGATGAAAAGATAACGAATTAATATACAGCATGTTGCTCTTGGTCATGGCCCTAGAAATCAGGAAGAGACTACAAGGATAATATTTATGATCAGACAAATAATAAAC--------AGTAAATTAATCTGTAAATTAAATTAAAGATAAATTAAAGAGTTACTAAACTTGAGTGCTGTTCACAAAGCACTAAGGTAGTATAGAGTACGGGCACTAGAAAAAAATCAAACTATTCTGAGGAAAAGTTGTA a score=162713.000000 s hg15.chr12_random 286434 1521 + 590431 AAATTTAAAAATTTCTAAGAAGGTGAAATTTGTTGCAACAAACAAAGC------AAAAAACATTCCTAGTTTTTTTGTGTGCTAATGTTGTGATTGATAATATTAAAATTTGTGTAGCACCTTTCACATTGGAATCCCAAAA--GTCTAATGAT-TTTTTTC-TTGCACAGAACATCAAAGTTGTCCTACGATACACAGAGTAAGTTGTA-----------------------------------------------CCCCCTTCCTT-----------------------------------------CAGCAG-------------------AACCTCCTTTGTGg----cactttgccatatgtcagcctctcttcaaagtgtatttttttattctaaatcttcagtgcagcagattatatttcccttttagagatgag-aaactaaagtacacaaggattcattaatttgcccaatttttcataggtagaaaatagtaaagcagagacttt-atccaggtatctgcctgtaaaattcactagtttaattgcc---------------------atgttttgctgCTTCTGCTCTACCAAATCCTTCGGGGAACCACAAGATTAGCTCCAGATTTCTAAGATGCAGTTGGCTAATA--CCCTGGTTCCCTGTTATCCAAC-TAGCCTTCGTTTTCTATGTTGAAGGACTTTGAATCTCCAGTCTAGGTCTTGG-------TTTCCTAACTCATCTGCTATAGAGGTAAGCTCCAGGGTCAGACTGGTTGAGTTCAATTTTCATGGGGCCACATTATGGTTAGAAGAAGACAATGTCTCTTGTGTTTTTGTTGTAAGAG--AAAATTCTCAAAATACCTCTCTAATAGCCTAGTACTATAACAAGTTCTCAAGGAATGTATCCAAAGGCAAGTGTGAAAACTTGTTTTCTATGGATTTAGCCTGGCCCTCTCCTGTGGTAAGCTGAGTTAGGATCAATAACCTCGTCTATCTAGACTAGTACCTAGACTCAAGAACCAGCTAGACCCGTGACAGAAAGACAGTTCTTGGCTCCTTCACAGTGAGTTCCCACTTCCTCCTCTCATCTTTATCCTTTGCACTTCTCTCTGTCTACAGGAGAGGAAGCCAGTAAGCCTTGGAGAAAGAA-----CTCTTTTCTCTAAGGCTCAAAGCAGAGAAATGTATGAAACAATTCTCAACTCTCAGCTATTGAATGCTTACTACATGGCTAATTCTAGAGTTGTGCATGGTCAAACATAACAACACAGCACAAAAGAAAAGCATTGTGAGAGTCACCAGAATCCATCTTAGCTTACAAGTAAGTTCACACAAATTGTACAAACTCAAATAACTATCCTAAGTTTCCTCTAAACTATTGCTTTAATCACAGCAGAAGGCTCTCAAAGCTACTGACAGCCAGCAGTTGCAGAGTCGAATGCAGTCTGACTGGCCACCTGTTGTGAGGTAGAAGCCAGGAATAAATGTGAGTAAAATCAAC----TTTATTAGTCAGAAAAAGAGACATCTGCCATAACAGTCAGTACAACCACCCAAAAGGACAAACTATAGTCCAAACTACTTCCCAGTTCCTGTTTGCTTCTCTTCAA--CCCTCCTTCACATCTAATATAGGAATATCTGCCATTTACTATCTGTATGCTACCA s mm3.chr10 7662126 1557 - 130738012 AAAATTAAAACTTTTAAAGA--GTAAAATTTATTACAACAAGCAAAGCAAAGTAAGAAAATATTCATGGTAGTTT--TGTGCTGTGGTTATGAAAAAATATTTTTATATCTGTATGTCA-TTTTCATACAAGTATCCTAAAACGATATAATGAT-TGTTTCCTTTGCTTAGAAAATTACTGTTGTACCATATTATAGACATTAAATTTTATTTtatatatatatatgtatatatatgtatgtatgtatgtatgtataCACACATGCAC---CacagagagagagacagacagacagacagagacagagacagagacagagacagtcagacagacagacaTATGCATGGATGACACTTTGCCATATGACAGCTCCTATTCAAGGTATATTTTTGTGTAT-ATGACCTATATGTAGCAAATGCAATTTTCTTCTTGGAGATGAACAAACACATGACTACAAGGGTTTCATAATTTACACA-TTTGTCACTGGCAAGGAAAGATAGAGCAGAGCTTCTAACCCCAGTCT----CTGTAGAGCTCAGGGGCCTGCATCATGGCTCAGTAGAACTTAGGGATACG-CTCACGGCTGCTCCACCACCA------------GCCTACAGGAGCAGGGGC--ATCTCCGAGATGACACAGGCTAAGAATCCCTGGGCTTATATTCTCCAGCTTAGCCTCTGTCC-CTGTGCCAAAGTACAGTGAGCCTC---TCTGTGATTTGGAAGGCTACTCATTAAATCACCTGCTGGGATGGCAGGCTTCAGGGTCA----GGTGGAACTCAAGTCCTAGAAGACCATCTTATGG-TGAAGGAAGACAGTG--------------GTGATAAGAGTTA-GGTTCTTTGAA--------------CTCAGTACAATGCCAGGTTTTT--------------GAGGCAAGTGGGCATA-TTGCCTTCTCTGGATTCATTCTTGGTTTCTGCTTTGTCAAACTGAGCTGTACTCAATGAGCTAGCCTATCTA---------------CCATGAA----CGAAACCAGTAGCA-------ATTCATTGACTCCTTCAAAAAAAGTCCCATCGTCTTTTCGT--TCCTTACCCTCTGGA-TCATATCTATGTA--------AGAGCCAGTAGACTTTGGAAAACTAATATTTCTATTCTCCCTAAGACTCAAAAC--AGACACGTGTAGAATAATGCTTAGCTACCCACCAGTAAATGCTTGTTATGTTGCTGAATCTGGTCCACTGCAA--CCAAGTGTGTTAACACAGAAGGGGAAAAAATTATATTCAGAGTCACCAGACTCTATCTTAGCTCACAAGTAAGTTTGCGCAAACCGTAGAAGCTCAGCTAATTACCCTAAGTTTCCTCTAAACTG-TGCTTTAATCGTAACAGAAGGCTCTCAAAGCTCCTGACAGCCAGCAGTTGCAGAGTCGACTGCAGCCTGACTGGCCACCTGTTGTGAGGTAGGAGCCAAGAACAAATGTGAGTAAAATCAACTTTGTTTATTAATCAGGAAAAGGGACATCTGCCACAACAGCCAGGACAACTACCCCAAAGGATAAA-GAAGGTCCAAACTACCTGACATTCACTGGGTA----TCCACAAGTCCCTCCTTCCTG-CTGACACAGAAGTGTCTACCATTTATTACCTGCATTCTGCCA s rn2.chr7 60472746 1447 + 139049774 TAAATTAAAATTTTTAAAGA--GTAAAATTTATTACAACAGGCAAAGTTAGAAAAAAAA-------TGGTAGTTT--TGTGCTGTTGTTATGAATAATTATTTTAATATTTGTATGGTA-CTTTCATACAAGTATCCCAAAACAATATAATGATCTTTTTTCTTTGCCTAGAAAATGACTGTTGTA-----TTACAGACATCAAATTTTATTTTATATATG------------------------------------CACACATGCACATACACagagagagagagagagagagagagagagagagagagagagg-------------------agaTATGTACATGG----CACATTGCTTTATGACAGCTCCTGTTCA--GTGTATTTTTGTGTTTTAAGACCTACATGTAGCAAATACAATTTTCTTCTTAGAGATGGACAAGCCTACAACTACAAGGGTTTCATAATTTACACAATTTGTCACTGGCAGGGAAAGATATAGTAGAGCTTCTAATCCCAGTCT----CTGTAGAACTCAGGGACCTGCATCGC---------------------ACA-CTCACAGCTGCTCCACCGCCA------------GTCCATAGGAGCAGCTAC--ACATCTGAGATGACACAGGCTAAGA-TTCTTGGGCTCATATTCTCCACCTTAGCCTCTGGGC--TGTGCCAAAGAACCATGATTCTC---TCTGTGATCTGAAAGGTTCCTCACTACATCACCTGCTGTGACATCAGGCTTCAGGGTCA----GGTGGAGCTCAAGTCCTAGAAGACCACAGTATGG--GAAGAAAGACAGGG--------------GTTATAAGAGTTAAGGTTCCTTGAA--------------CTTAGTACAATGCCGAGTATTT--------------GAGGCAACTGGGCTTACTTGCCTTCTCTGGATTTATTCTGGTTTTCTGCTTTGTCAAACTGATCTGGACTCAATGAGCTAGTCCGTCTA---------------CCATGAA----CTGGAGCTGTGGCA-------ATTCATCAGCTCTTTCGTGAAAAGCCCCAG-GCCTTTTCCT--TCCCCACACCAT----TTCTCTCTATGTA--------AGAGCCAGTAGATCTTAGAAAGCTAACACTTCTATTCTCCCTAAGAC-------------------GGAAAAATGCTTAGTATTATTCTAGTAAATGCTTGTTACGTTGCTGAATCTGGTCC-CTGCAA-ACCAAGCATGTTAACACGGAGAAAAAGGAAAGTATATTCAGAGTCACCAGAATCCATCTAAGCTCACAAGTAAGTTTGTGCGAACTGTAGAAACTCAGCTAATTATCCCAAGTTTCCTCTAAACTG-TGCTTTAATCATAACAGAAGGCTCTCAAAGCTCCTGACAGCCAGCAGTTGCAGAGTCCACTGCAGCCTGACTGGCCACCTGTTGTGAGGTAGGAGCCAAGAACAAATGTGAGTGAAATCAACTTTGTTTATTAATCAGGAAAAGGGACATCTGCCACAACAGCCAGGACAACTACCCCAAAGGACAAA-GAAGGTTCAAATTACCTCACATTTCCTGGGCA----TCCGCAAGTCCCTCCTTCCCG-CTGCTGTGAGAGTGACCACCATGTATTATCTGCATCCTGCCA a score=156907.000000 s hg15.chr12_random 288001 2110 + 590431 ATTTAATATGTAACTAATAGATATGCATTAGAAAATTTATAAAGAGATTTTTTAACTGAATAATATGTTAAATACTAAAAACGGAAAATGTCTTCACCatatttaatttttta-attaaaaattaGGTGACATTTTAACTTTCACTAACTGGTTTTAAA-AATCCTTTTGTTTTG---------ATTCTAAATGAAATCAGGCAAGCTATCTCAAAGCATTCAGTTACGATTTATAATCTGTAAGGGAAGCTCCCAGTGGAAGCAGGGTTTCACTTGACG----------GAAAGAAGAAAaccattaattgtgaaacacctagcatgtgtctgatgtgctggacagatttacctacatgttatctttttaac-attaatattatgcttgttagggaggtgttatcagaaccattttattgataagaaaattatgtttctgaaaagttaacaaactcatctaaggtcacatagctaataattagcagGTTGTCTGCTTGCAGAGCTGCCAACCCTAGTAAACAGCACAGTATACAGTTTCCATGTCCCATGCCTGAGGAACTTAAACTGATGTGATAAGATGGCTAAGTATCAGAAAATATGGCAGAACAT--GCCATAATGACATTATAAACAATTACT--TTTTTAAAAAAGCCTTTTGGCTTTTTTACTTGGATTACTTGGATTATAAAGGCAAAGGAAAGTGCAATCACCCTGTACTTCTATATCACCATCACCTCATTAGTTAAGTACAGGTCAAGGT-CTCCCTAGAATAACAATGAACCCAGGTGAGGAGAGTTGACTCCAGCCCTCATGATCATGCCCACACAGAAGAA-----CCACATTAAATGTCTTCCTAtctctctctctctctctctctctctctGTCATGCAGACACACACACACCCCATGCAGGACTCTAGAGAAGTTTCTAGAGAGTCAAGATAAGGATAGCAACATTACCACAGCAATGTCTGAAAGAAAAACGATCTTAGAATTAACACAGGGCACTGCTTTCAGAGCTGCAT----TTACCTCCCATTGAGGTCTCATCTGGCTCCTCATGTAAATAAGGAATAATCACAACTACCTCTTCCATGAAGTCACC----------CAAGTATATTTTAGG----AACGTAAAGGCACAAAA---------------------------------------------------TCTAACTTAT----------------------------------------------------------------------------TATCAGCC----------------ACTGCTGAGGAGGAAAAGCTCAGAAAGGATCAAA-GACACACTGGCATCCTTGGGGACCCAAagatagtggtcagagtagaatgcctgaaactgagatgaagacggggttgccattactgataaggtctgggtatgagtgaggaagcaattcactgaggttggaagataaggtcatggagaagtggaatcctaggaactgggagtgtgtaagaaggatcatctatatacatatttaaatggccccgaattgagataatgttaat-----atgggagaaatagaataagccacaagagaagattgctaggtaaagaggagagaggacccaagggtagggtaggcaaaagaaacaaaagtagtgtaagggagtttaagagaaaggcaa------------gagc-atgatctgaaaaccacaatgacaaacaaggaagacatctattct---------------actcccaagcctagtggtatgaagtatggttgtaagtgggaaaa---acagccacctcttgtcaggcttgcagtgaaagcagcaaccttagggagagccagttgtcagagcaagaaggtgaaaggaatatttcaagaaaaatctgaaactatagaagactttgctgaaaatggtccatggactctagaaagtat----------------------------------------agagagaatgga--acatgatggg------------------------------gtgggacctgggaaacagaggtttgttgttgttgttgttactgacttgaggttaaggacacaatgaaatttgtctcaataaattcaaagcaaatggtaaaggtaaggctttgggtttcag--aagtaggagtaacgggtttc---tggagcttcc-----------tcttcacccttAATGATGCACGCAGAAGTTATAGAGGAGGTGTGGCCTTAATCTCAGGGCACATCAGCtcctcactacaacccttatatggtaggtactattattatttccacttttacTTATTAAAGAGAGAATGACCATGATAACTCTAGACTGTACCTAAAGCTCCATGGTAAAGGAGTCGTGGACTGt s mm3.chr10 7664180 2185 - 130738012 atttgaaatgtaaacaaataaattg-atcaa---tTTTTTAAAAAGAT--------TAAATAATGTGTTAAATTCTGAAAGTGAAAAATAATCTCTCCGTGTTTATTATTTTACATTTAAAATTCGAGTATCTTTTAAGCTTCACAAGTTGGTCTTAAACAATCCTTTTGTTTTGTTCTGTTTTGATTTGGCTCATGCCACACAAACTATCTTACA-TGCTCAG----GATTTCTAACCTGTAAGGGCAACATGCAGCAGGATCAGGACTTCAGTTGCCTTAACTGACATGTAGAAAGAAAACTGCTAATTATGGAGGACCCAGTACATGTCTCATGCACTGGACAGGATCACCCACATGGTTTCTATTTCATGACTAATATCA----TGGTAAAACggtactgttataactgttttacaaatagaggagtgatatttttgagacgtcagcaacctcatctgaagttgtacagctggtaattagcaTGCCTTCTACCTGCAGAGCTGAAAGCTTTAACGAGACCAACAGAACATGGTTCCTACATGTTATGCCTAAAGGA-TTAAATTCCTTTGAGAAAG----GAACTGTCAAATGATGGAAGAAAACATTCTCTCTACTGA---TGGAATTAGATGCTC-TTTTCCTAAAAGCC-----------------AAAATATGCAG---GTGAGGGTTAGAGAAA-----ATCATTCCATAGTTGTGCATTCCCA------CATTCATTAAAAATAGGTCAAGATCCTGTCTAGGACAATGGTGTTATCAGCAGAGAAGGCTTGAGGCCAGAACTCAAGATCACAGCCACACAAAAAGAGGACTCTATATAAAGTATGCCTCTATCCATGTGTGTCTCCCT-TGGCTGATTCTCCTGC---------TATACTCCCTCATGTACACTACAGATGTTTCAAGAGAATAGGAATGAATAGACCTAGACTGCTGCCACA---TCTG---GAAGAACAGTCTCAGCATTA--ACAGGCCACTGTTTCGAGAGATGGGTGTGCTTACTTTCAATTAAGGGTTC-TCTGAAATCTCATCTAAA----GGACAATCACAGACTGATCTTCATTGAGGTCACCAGTCATCATTGAACAATATACAAGGCTACATTGTAA-TGTACAGGGAACCCTGGACACTCATTTTTATAGCTC-TTTGGTCTTCCCACTTTTGCCCCTTCAACATATTCTCTTGGTGTGTAGCAATATAAAG---------------------------------------GGCATCAGTATTTACGAGCCTTTCCTTCACAGCCT-AGTGCTAATGAGGAAAGGCTTGGATACAGCCAAACGTACCACTATAGTTCCTGGGGG-CCAAAAATGGTAGT---AATGGGACATCTGAAATGGA-----------GACCactggtaataacaaagccctggcatgaaaataaaaggggttggctgtagttagaaaataagatc------aaaaagagtctgaggaaat-gaagcatacgggaaggaccatctacaca-acactgaggtcactgagagctaggaccggggtaaa------agagaaggttaaagtgagctgtaagtggacgctatgaca-gatgacgtcaagagattcaagggttg--------------------gtagagtgagacagtttcagactaaggcaaagggtgggggcggggtgaacacatgaaagccactgt----------gaagacaactgtcttcataggaacaagagcacctctaagcctagtggtggaatgcatagcagtttcagggagaaa--acagacacctgatgcca----------------accaactgcaagcaagaacagttgttcaagcgagaaagtgaaa-caatatcagaag-aaagcctgaaactatagaattgttttcttatgat-ggccaggaactccagaaagtaaaagcagtgagattttaggagtcaaggagttatgggtatacagagacaagaga--atatacagagactaaaatatcaggctaccaaacattgtcagtgtgat---gataagggaggctaggagttctttccatggtcaatttaaga-taatagcattatgagatttgtcccaataaacccataggacgtggtaaagatgaagc--tgagttgtgggtgggtcaggagtgctgaCCTCACTTACAGCCTTACAGGGCTGGCCTCTTTGCCA-TGGCCGTACAAGTAGAA-CTACAGGATCACTCACAACTT-ATCTCAGCACACAGTCAGTCTTCA-----------------TACACCCTCTTATCA-TTCCATTTTTACATGTC--AGATAGAATGGCAGCCA----TCCGTACTATACACAAAGCTTTA-AGCCAATGGCCCTCGAACTTT s rn2.chr7 60474730 2104 + 139049774 atttgaaatgtaaacaaataaaatg-attaa-------taaaaaagaT--------TAAATAACATGTTAAATTCTGTAAATGAAAAGTATTCTCTCCATGTTTAT--TTCTA-ATTCAAAATTAAATAACCTTTTAAGCTTCACACGTTGGTCTTAAACAATC--TTTGTCTTG--CTGTTTTGTTTTGACTCATGGCACAGAAAC--TCTTACA-CACTCAG----GATTTCTAACCTGTAAGGACAACGTGGAGTGAGAGCAGGACCTCCGTCGCCTCAGCTGACACGAAGAAAGGAAACCACCAACGATGGAGGACCCAGGACACGTCTCATGCACTGGACAGGGCCACCTACATGGTCTCTATTTCATGACTAATATCA----TGGTAAAACGGGACTACTGTAACTGTTTTACCAATAGAGGAATTATAATTCTGAGACATTAGCAACCTCATCTAAAGTGGTGCAGCTGGTGATTAGCATGTCGTCTACCTGCAGAGCTGAAAGCTTTAATGAGTCACGCGGGACACAGTTCCTACGTGTTGCACCTAAAGGA-TTAAATTCCTTTGAGAAAG----CAACTGTCAAATGATGGAAGAGAACAT--TCTCTATTGA---TGGAATTAGATGCTCTTTTTCCTAACAGCC-----------------AAAATATGCGG---GCAAGTATTAGAGAAAATATGATCATTCCATACTTCTACATTCTCA------CATTAGTTAAATATAGGTCAAAATCCTGTCTACAATAATGGTGTTATTATCAGAAGAG----GAGGCCAGAACTCATGATTGCAGCCACATAAAGAGAGGACTCTATATAGAATATGGCTCT-----------------------------------------------------------------------------------------------------ACTCCTACCACA--TTCGG---GAAGACCTGTCCCAGCATTA--ACAGGCCACTGTTTCGAGAGGTGCATGTGCTTAGCGCCTGTTAAGGGTTC-TCTGACATCTTGTGTAAA----AAGAAATCACAGCCCTATCTTCCATGAGACCACTAGTTATAATACAACAATACACAAGGTTACAAGGTAA---CAGAAAGAATCCTGGATGCTCATTTCTACCACCCTTTTGGTCTTCCTGCTTCTGACCCTTCAGCATATTCTTTTGGTGTATAGCCATTTATATTGTTAACCAGTCTTTCTTTCACAGATTCCCTTGGTGTGCAGCATCAGTAGCTACCAGCCTTTCTTTCAAAGTCTCAGTGCTAAGGAGGGAAGGCTCAGATACAGCTGAA-GGACCATGATAGTCCCTGGGGG-TCAAAAATGATGCC---AATGGGACATCTGAAATAGA-----------GGCCGCTGGTAACAGTCAAGCCCTGGCATGAGAGCAGGATGGGTTGTCCGTGGttagagaaaaagatc------aagaagagtccgaggagat-aaagcattcgggaaggaccgtcgatgta-acgttgaggccgctgagaatgaaggcagcggtaaatgggggtgaggggattaaagtgagccatcatagaaaaccatgaga-aataagggcaagaaattcaagggttc--------------------atcaaatgcagtagcttcacactaagacaaagagcagagtgggagt-agcagatgcaaaccactgc----------gaagacaactgtcttcacagaactaagagcatccctacacgtagtggtgggatgcatagcagtctcagggagaaaacacagacacccaac--------------------atcaactgcaagcaagaacagctgtccaagcaagaaagcggaa-gagtatcagaag-aaaacctgagactatagaatttcttgcttatgatgggccaggaacatcaggaagtataagcagtggatgtttaggagttgaggagttaggagtgtacagagacaagagagggtgtatagagactgaagtatcagagtagttaacgtggtcagtgtgat---ggtaaggaaggctaggagttctttccacagtcaacctgagattaaaaccattatgagatttgtcccagtaaactcacaagacatggtaaagatgaaga--tgggttgtgggtgggtacaggaTGCTGGCCTC-CTTACAGCCTTA------------------------CTGTACAAGTATAA-CTACAGAATTACTCACAATTT-AACTCAACCCACAATCAGCCTTCA-----------------TACACACTCTTACCG-TTCCATTTTTACATGGC--AGATAGAATGGCAGCCA----TCCACACTATAGTCAAAGCTCCAGAGCCAATGCCATGCGAACTAT a score=5603.000000 s hg15.chr12_random 290634 40 + 590431 GAAGGCAGACAAAGTCAAAGAAAA----GTATAAAGAATGACAT s mm3.chrX 9458654 40 + 149996094 GAAGCCAGACATGGAAGATGAAAA----GTGTGAAGAGTGACAT s rn2.chrX 22025253 44 + 133900917 GAAGCCAGACATGGAAGACGAAAGTGCGGTGAAAGGAGTGACGT a score=164098.000000 s hg15.chr12_random 290717 1717 + 590431 TATAGTAGTCAACTACACTACGAATTTCTCCCTTTCAACAAAAACCCTACGACCTCCATGTTCCAGAACAGTGCCACCTCTGTTGATATATATGTTGTAACATCTGAAGCATAATTTGAATATTTATGGTGGCCTA--------CTTTATTGTTAGTCTTAATT------ATGTTTTAGAGTAGTC------TAATATTTTCAGGATGAC--------TTTTcc--agaccaatttagtttatccgataagaaaatttagctagtatattatgagaaatattgta--------aaacgttatttcttcttaacattagcaaaga--ttttaacaaggccctgcttgcctcctattatcag--actgg--ggaaacatggtttataacttaaataacattg-----aaaatttggctgaaaagtgcacttaaaaagcagttattgatggcacaataccaacctggaA------AAGTAT---------AGCATGTGTAAGTCCAAGAGATC-ACGGTGAATGATGAATTGCAAACATCTCTCTTGGCAATTTTAACAATAACATAATGTTTAAAATATGGAGCAGGAGGATATAGCTATGAGGAGGAAAATCACCTGAGAAAGGGTA-CAGGAAAGGACTTCATTTAAGTAATATGACCTTTCTCAATTTCATTCAACCCAGAATTTCTCTGCTAAAATCCAGTAATACATCTTGTAAT--TGATTGGCATGCACATTAGGATGTAAACAAACTTTGCCAATATCTCTGACAAGAGTTCTGAGGACTGTTTTGCAAATCAAATATATGTGAAATGTTATAAGGAATAAAAAACATTATGTTTGTACTAATAATTGTAACTATAATAATAATGTTGGTATTATTCCTACTCAGACT-AGTATGAAGTG---TTCACAGCTTCAAGAC-CCCCGGCATGAAAAGCATTGGTAATCATGTCATTATCTGTCTGATTTAT-----TTGTTTAAGTTCC---------ATAGG-AATACATTTTTTTCCAGAAACAACCCTCATATAAGA---CTTCTTGATGCATTAATTAAAAAAAATCTGTGGCTCCTTTTTAAACAAGGCAAAAACAGCAGACCT-GCTTGGAGCTACTCATATTTATGGGCATCGAGAGTGTTGTTAGCTTCTCTTACCATATATGAATCAG--ACAAAAAGAAACAGAAGAGTATGTGAA--GCTTCCCATATTTTTCTACTTATCTAAAAAAACTAAAATCAGAAAAGGAAACAGCATTCTCACCTAAGAATATCCTCCCACTCAGCAATGCTTCACATTTTTTCATGGATTTTATT---ACTATTATTATTCTACCCTCAGGGAATTCCAAGAGTAAATAAAAATTTTTGAT-CCAAACCGCAACCTCTTCTTCTCCCCCAGCTAAGGA---TCTGCCCTGCATGGAAACACGTACATGAACTGCCAGCCTACCCACACAGCCATGTC-AGACTAGCACCTGGGAAGTTATTCCACCCTGTCCAGGGAGCAGAATGACACTCAAGCTGTTACCCTTGCTTTTCAAAGGCTGGAATTATTGTGGGTTACATCACCCTTTAGCAGAAATATTACC--CTTCCTGTGTCACCTTATGAAACACTACCATGTGCCCACTCACATTATGGGGCTTTTTAATGAACATACAT----ATATTCCTG-AGGGTCAAATGTCCATGAACTAAGG----AATTCCCAAAACCCTAATATTAGGAAATAGATAATGACTAAAAATGACCTTCATTCAATGCAGACCACTGACACAGACTACATCGGCCCTTAGGAAGGAGGTTTGCTTTTT s mm3.chr10 7666969 1624 - 130738012 TGTGAGATTTAACTATATCACGCATGTCTCTTTTTCAACAAAAACACAAACATCTCCATGTACCAAAATGATGGCACCTCTGATGATGCATACTTTATGAAATTTGGGGAATAGTTTGAATATTCATGATGGTCTA--CCTTAGTTTTATTGTTAACATTTATT------------------AGTCATGAATTGAAGTCTCCAAGGTAACTTGGATTTTTTTCC--AGTCTAAT----------------AAAAAT-----GAGAATATTGTGTGAAATATTGTGAAGAAA--AAATGTTATTCATCTTTAACTTTATGAGTTGACTTTTAACTATGTTCTTCTTGCCTTCCAGTATCAGGAAATAGATGAAAATATTGCCAGTAACATGACTAGCATTGGTCCAATGATTTGGCTGCAAAGTGCACTTCTAAAGCAGTGGCTGCTGGCACCATACCAACCAACAACACAATAAATATTCGATTTACAGTGAG-CCAAATCCAAGGGGTCAATGGCAAGGGATGAATTATAAACATCTATGCTGGTAATTTTAGCCACAAAATAATGATAGAAATATAGTTCATGAGGATATAGCCATGGTGAGGTAAAGCATTGGAAAGAGGGTGGCAAAGAAGG---------------------------------CATCCTACCAAACATTTCTCTGCTGAGATTCAGTAATACATTCTGGCAAAATGATAGGTAAGAGCCTAAGAGCTTTAAT--------------------CCAAGAGGTTCAAGCATTA-----------GAAGCTCTTGAAAACATGAAAAAGAATGAAAATCATT---TTTGTGT---------------TAATAATAATGTTAGTGTTCTTCCTGGTGGTATCTAATATGAAGTG---TTCATGACTTTGGGAAGCCCTAGCATGAGAG--------CAACATGTGAGCATCTGTCTCACTTCTTAAAATTACTTCAATTCTATAATAACAATAGG-GATTTTTTTTTGTCCAGAAG------TTATATGAAAATCCTTCTTCACGCATTGAT----AAAACGCAGTGGTCTTCTTCTTAACAATG-GAAAGCAGCAAACCT-GCTTGAAGCTACTTATATGTACAAGCGTCAAGCATTGTATTCACTCCTC----------TGGATCAGTAGTAATAACAGATATGAGAGTATTTGCAGGGATTAC--------------TATCTCCAAAGCTCAAAATCA-----GGCAGCAACACTGTCATA-GGGAATGTCTTCACCCTCAATGAGAATTCCCATCTCGTTGTGGATTGTATTAGAATTGTCATTATTGCACTCACAGGGGATTTAGAAAATAAATAAAAAATTATGATTCAAAACTTGACTGTTTT---CTCTCCCTGCTAAGAA---TCTTCCCTGCGAGAAAATGCAGACATACATCACCATCCCATT--TACAGACATGTCCAAA--GGCACCTGGGCAGTTACTTCAGTCTGCCT--GGTGTAGCACAGGGATCAAGCTGTTCT---TGATTTTCAAACACTGAAATTATTGTGAGTTACATCACCCTTTGGCAGAAACACCATCTTCTTCCTGCATCTCCATCTAAAACATCAGCATATGCCTGCCCAAACCATGGAGTCTTTGGACACACATTCATTTCTGTGTATCTGGAGAGTAAAACCTCTATGGGTGACGGCCATGATGCC--ACACCCTAAGGCCAAAACATAGG----GACT-CAAATGGCCTTCCTTCATCATAGACCATGAAGATGGA----ATAATCCCCTAGGAAAGAGATTTGCTCTTT s rn2.chr7 60477020 1600 + 139049774 TGTAAGATTTAACTATATCACACATGTCTCTTTTTCGACAAAGGCACCAACATCCCTATGTATCAAAATGATGGCACCTTTGATGATGCATATTTTCTGAAATTTTGGAAATAATTTGATTATTTATGATGGTCTATACCCGAGTTTTGCTGTTAATATTTATTTGGTGAGTGCACTCTAATCGTCATGAATTGAAGTCTCCAAGGTGATTTGGTTTTTTTTTTTAAGTCTAAT----------------AAAAAT-----TAGAATATTGTGTGGAATATTGTGAAGAGACAAAAAGTTAATTATCTTTAACTTGATGAGATGATTTTTAACTATGCTCTTCTTGCCTTCCAGGATCAGGAAATAGATGAAAATGTTACCAATAATATGATTAGCATTGGTCTAAGAATTTGGCTGCAAAGTGCACATCTAAAGCAGAGGCTGCTGGCACAGTGCCAACCAACAACACAATAAATATTCAATTTACAGTGAGGCCAAATCCAAGAGGTCAATGGTAAATGATGAATTATAAACATCTATGCTACTAATTTTAGCCATAAAA-AATTATAAACGTATAACTGAGGAGGATATAACCATGGTGAGGTAAAACACTAGAGAAAGGGTAGCAAACAATG---------------------------------CAATTTACCAAACATTTCCCTTTTAAAATTCAGTCAT--------------TAATAGACAAGAGTGTCTGG-----------------------------CAAGAGGTTTACACATTA---------------------AAAACATGGAAAAGAATGAAAATCGAT---TTTATGT---------------TGACAATTATTTTAGCACGATTCCTAGTGAAATC-AATATGAAGTGATGTCCATGGCCTTGGGAAGCACTAGCGTGAGAG--------CAGCATGTGGGTGCCTGTCTCGCCTCTTAAAATCACTTAAATTCTATAATAGTGATAGGCGGGGTTTTGTTGTCCAGAAG------TTATATGAAAATTCTTCTTTGTGCATTAAT----ACAACTCAGTGGTCTTTTTCCTAACAATG-AAAAACAGCAAACCTNGCTTGAAGCTACTGATATTTATAAGCATCTAGCATTTCATTAACTCCTC----------TGGATCAGCAGTAATAACAGATACAGGAATATTTGGAGGGCTTAC--------------TATTTCTAAAGCACAAAATCAAAATGGGAAGCAACAGTGTCACA-GGGAACATCTTCATCCTCGATGAGGATTCCCATCTCATCACGGATTTTATTAAAATTATCATTATCCTACTCACAGTGGATTTAGAAAATCAATAAACACGTATGAT-CAAAACTTGAGTGTTTTTCCCTCTCCCTGCTAAGAAGAATCTTCCCTGCAGGAAAATGCAGACTTGCCTCACCAGCCCGTT--TACAGACGTGTC-AAA--GGCAGCGGGG-AGTTACTTCAGTCCGCCT--GGTGTAGCTTGGAGCTCAAGCCGTTCTCCTTGATTTTCAAACACTGGAGTTACGGTGAGTT-CATCCCCCTTTGGCAAGAATCCCACCTTCTTCCTGCGTCTCCATATAAAACATTACCCTATGCCTGCC-GTACCATGAAGTCT--------------------GTGTTCCTGAAGAATAAAACATCTATGGGTTAAGGCAACGATGCC--ACATCCCAAGGTCAA------------GACT-TAAGAGGCCTTCTTTTGTTACAGATCATGATGATGGA----ATAATTCTCCGGGAAAGGGGTTTCCTCTTT a score=203394.000000 s hg15.chr12_random 292434 1812 + 590431 GTAATT--GCACAT-TTTTCCTACATTTGATCAGATCCCAAAGACTCTGCTCCCTAG-ACAAAGATTTTCTTTCACCAGTGAGAGTTAATGCCTCAAGAAGAGGGCAGAGTTTCCAACAACACTGACATTATCACCTAATTCTCTATCCATCCCTAATTGCTAGTCCAAGATCAAATGACTAGAAAATCAATTTCTATTAATTATTCTATCACAATATGAAGAAAATTCTTCAAGGTGTCATGATGTATGTCACCAACCCATAAACATGTTATATATATATATACACGTTATATACCAAATATGTTATATACTCATATATGAGTGTTCAGCCTGAGATGCCTTTCCCTACAGAATCGCTGGTTTAAATTATAGCTATGTTCTCTGGTTAGCCTATAAAAATCTATTTGAACCATTATGTACC-----TACT----CCAAGTACACATAGAACTCTTTCAACTTTGTTTCACTATTAGAT------TACTTTTATGAAAAAATGAATACAAAGTTTGTATTTATTttaagctgaaccatatgaaaatgcaatttttgtagttcaaaaatggctgaatcttggcaatttcatgtggttcaatctaaTCCCTTTATTCAAAAAGCATTAACTGAATAATATGCACAAGA-GAGAAAGAGGTTGGGGGAAAAAGAGTGGAAGACATAATTCATGTATTTAGAGATCATCACATCCAGTTAACACGTAAATGGATATAATGGGTACATGACATGATAAGCGGTGATTTGATGCCTTTTAACTCC---AGGAAAACTAA--ACACAGACCACGTGTGTTTT------ATATTACCAAGCAATGTCAG----CAGATATGTTCACCTTGAGCCCAGCCC----CCTTTGCCAAACCCACACTGTAAG--GGACAGGC--TGAAGGTCAGGTACCGCCTG-GCAGATAAACCATAAGAAT----AGGAGTCAAATGTTTATTAGATTTTACCTA-CCTCGGAAAGGGCCAATGATTCAGCCATTCTCTATAAAA--GTACTCAAA-CAGAATGACCTGTAATTTAAATTTTCTTATTACTCTCTTTAGCTGTAATGTTTATTCTAATTTGTTTTGGATAATAAATAGATTAATCGTTTTAATAAGGATATTCAGTCTGTTTTCTATTTGAAAAATCCAGAGGACAAACACCTCTGCTTTGTGTTGGCTCCCTAATTATGCTAACTATATTTGACTGAGTATATATTAGACAGAGAGCCAAGCAGGATGTTTGGATCATAAAATGATCCCTTATTCTCAACTCCAAATTACACCATTAATCTTCAATTTAATTTCTCACAGATTTCTCCATAGTCAATAATATGTATGTATTATATTAATACTATTAAACTCCTGTAAAATTATAGTTTGGGAAATTCAATGATACAATCTTAGAATCCAGTTCAGCATCAATATAATTTTAAATTTTTAGTCATCTTTCTTAATAT-AGAAGCAATGCTCATTAAATTTTTAAAAATCAAACAATGTAAAAATACAGTAGAAATTGAAAGTTA--------TATGTAATTGAGGTGAAAGGGGTGAGAGAGCAAGAGATGGTGATTTGAAAACAGAGTGACATTATATTGTTGTATCAAAATAACCACATCCAAAAAGCCATGACATATACTGTTTTGCCTATAACTACTGCATAGAACTATATATGATTAATACCAAATATTGGTTTACAAATAAATGCCTTATCAATTTAAAGGAGGGAGATCACCCCTCTATGTGTCAAAAATAGTTGATGGGTCTAATTCTTTGTAAATCACTGTAAGATACATTATCTTACTTGATGACTGattcattgaagagagatttattgagtgactaccaa s mm3.chr10 7668660 1663 - 130738012 ATAATTTGACATATATTTTACTACATCTGACCTAATGACAAAGATTTTGCTTCTTTGTGCTGAAAATTTGT-TTCTCATTGAGAACCAG----------------------------CACCATCAGCAGTATCACCTGATTTTCTAGCTACACATAATTGCTGGTC-----TTAAATAACTAGCAAAGAATGGTTTGCTAATGATCTTGTCATGATATGTATAATACTCTTCCAAGGGT--------------------------CAAATCATCTACATGTAAATAGATTGCATATCAAAT----------------------------GCTTGA---GCATTTTCCTGTCAAGTTACTGGTTT-AGGGA-------GCTCT---------CTATAAAAATCCATTCGAATCATTTAGTGCCTTTTTTAATCAAAAAAAGTACCAATAGTACCATTTCAAGTATTTCTCATTATTAATTAGAAGTTATTTCTATAGAGGGATAAATAAAGGCTTTAGATTTATAT-----TGAACTGTATGAAAAAGTAAGGTTTATACATCACAACCAGATAACTGTAGGCAATTTCATGTGATTGTGTCTCAT---------AAGTAAAAAC-------ACACTACACTCAAGACAAATAAAAGGCTG------------CGCTAGACAGTTCTTAAGCACAC--AGGCCATTACACCCAGTTAAGGCACAACCAGCTATTATGGTTGCTTAACACTATAAACAGCAATTTGATACATTTTGGTTCTGAAAGGCCACCTAA--AAACAGACCATATGGGTTTTTTATTATTATTACCAAGTGGTGTCAAGCGTCCAACCTCTTCGCTTTAAGCCAACCCCCACGCCCCAGCTAGCCCCACACACTAAGCAAGACAGGGA-TGTAGGTCAGGCACCGCCTGCTCAAACTAATTAGATGAATGAGCAGGAGACAAGTGTTTATTAGC-TATGCCTC-CCACAGTAAGGGCCAGTGGGTCTG-CACACTCGGTAAAA-CAAACTCACA-TACAGTGGCCTGCAATTCAACTTTTATTTTTACTCTCTTCAACTGTAATGCTCATTCTGATTTGTTTTGGCTAATAAATAGATTAATCAATTTAATAAGGATATTCAGTCTATTTGCCATTTGAAAAATCTAAAGGATGAACACCTCTGCTTTGTGTAGGCTGCCTAATTATGCTAACTGTCTTTGACTGAGTATATATTACACAG-GAGCCAAGCAGGATGTTTGGCTCGCAATATGATCCCTTATTTTCTTCTCCAAATTGCCTCATCAATCTTCTATTTAATTTCTCATGAATTTTTGCGTAGTCAATAATAGGTGTATGTTACGTTAACATCATTAAACTCCTA-AAAATTATAGTCCGGAGAATTAAATGATA-AGCTCAAAAATCCAGTACCATATCAGTACAATTTACATTTTGTAATCATTTCTGTTAATATGAAAAATAATTCTCATTAA-CTTTTAATAATAAAACACTGCAAAAAGTAAGTAG-----AAAAAATAGAAAATAGAAAATAGTTGAGATATCAGG---GAAACAATAAAG-------------AAGCTGTGAGTGACTGTCTCTGTTTCCCAGTACAACCACAGCC-CCACACCATGATATATTCCACTTTGCCTATAACTACTATACAAAATTATTTATTATTAAAGCCAGAAACTGGTTTGAATATGAATCCTTTGTAGAAATGAAGGAAAGATGTCA--TCTCCAAGC-----------------GCTCTAGCTC--TGTAAATGACTAGCAAACATAT--TCTTACTTGGTGATC-ATTCACTGAATAGA----TACTCATTG-----CAA s rn2.chr7 60478621 1674 + 139049774 -TGATTCGACACAT-TTTTACTACATTTGATCAAATGACAAAGATTTCAGTTCTTGGTGGTGAAAATTTGTGTCCCCATTGAGAACCAGTACCT--GGAAAGAGAAAGAGAATCGAGCACCATCAACAATATCACCTGATTCTCTGTCTACACATAATTAATAGTC-----TTAAGGAACTAGCAAAGGATGTCTTACTAATGATCTGGCCATGATATGTATAATACTCCTCCAAGTGT--------------------------CAAACTATCTGTATGGGAATAGATTGTATATCAAAT----------------------------GCTTGA---GTAT----CTGTCAAGTCACTGGTTTCAGGGAAGGC-AGGGTCT---------CTATAAAAATCCATTTGAATCATTTAGTAACATTTTTATT----AAAAGTACCGATAGTACCATGTCAAGTTTCTCTCATTATTAATTAGAACATATTTCTGTAGAGGAATTGATAAAGGCCTTAGATTTGTAT-----TGAACTGTGTGGAAA-GTAAGGTTTATACGTCAAGATCTGCTAACTGTAGGCAATTTCATGTGATTTTGTCTTATCCCTTCACAGAATAAG----------------CAATCAAGACAAGTAAAGGGCTG------------CACCAGACAGATCTTAAGTACAC---GGCCACTGCACC-AGTGAACGCACAACCAGCTATTATGGCTGCTTAACACTATAAACAGCAATTTGATGCATTTTGGTTCTGAAAGGACAGCTGACAAAACGGACCATATGGGTTTTTT----TTATTACCAAGCAGTGTCAAGCATCAAACCTCCTCACCTTAAGCCAACCCTCAC-CCCCATCTAGCCCCACACACTGAGCAAGAAAGGGGGTAAAGTTCAGGCACCGCCTGCTCACACGAATGAGAGGAATGAACAGGAGAAACGTGTTTATTAGA-TACGCCTAACCACAGGGAGGGCCAGTGGGTCCG-CACGCTCGGTGAAAGCAAACTCACAATACACTGGTCCGTACCTCAGGTTTTATTTTTACTCTCTTTGACTGTAATGCTCATTCTGATTTGTTTTGGCTAATAAATAGATTAATCAATTTAATAAGGATATTCAGTCTATTTGCCATTTGAAAAATCTAAAGGATGAACACCTCTGCTTTGTGTAGGCTGCCTAATTACGCTAACTGTCTTTGACTGAGTATATATTACAAAG-GAGCCAAGCAGGATGCTTGGCTCGCAACATGATCCCTCATTTTCTTCTCCAAATTGCATCATTTATCGTCTATCTAATTTCTCATGAATTTTTCCATAGTCAACAACAGGTATATGTTATGTTAACATCATTAAATTCTTA-AAAATTATAGTTTGGAGAATTAAATGATA-AGCTCAAAAATCCAGTACCGCATCAGTACAATTTAAATTTTCTAATCATCTCTGTTAATATGAAAAATAATTCTCATTAATTTTTTAATGATAAAACATTGCAAAAAGGA----------GAAAAATA--------CTTATAGTTGAGGTGTCAGG---GAAACAATAAAA-----------ACAAGCTGTGAGGGACTGCCTCTCATTCCCAGTACAGCCACAGCC-ACACGCCATGATATCTCCCAGTTTGCCTATAACTACTACATAAAATTATCTATTGTCAATGCCTGAAACTGGTTTGAATATGAATTCTTTGTAGAAAGGAAGGAAAGAGGTCA--TCTCTATGT-----------------GGTCTAATCC--TTTAAGTGACTATCAAAC--AT--TCTTAC-TGACGACC-ATTCATTGAATAGA--TCTACTCAGTG-----AAA a score=67473.000000 s hg15.chr12_random 295232 760 + 590431 accactactatacagccttataggtgatattaataaatttgacctttattctgccagcaataagaaaaca----------ttgaata-ttttaagaaagtgattgatttTTAAAACTATCTGGGTAGGACAAGAGGAGGTTAATTAA-AAGAGCAAAATGCTGCAGCTGCCAGATAAATAAATGCTCTCTAAGCCTACAGAAGAGAAAGCAGGTTGGTAGGTCAGCCGTTCCCAAA------ATGTTCTGAATTACCTCGACAGAAGTGGGAACAGGGCCACTAGTTATGTACTTCCCCATTGTCCATTCATTTATCTGAAGTTAGACTTTAGGGCTTCTTG-TGTATCTGTGTTCACCATTCAGCCTGGTAGTAGTACTCTACATAGCAATTGCTAAATAAAACCTTTGCTGATGAATTGTCAGAATTCTAATATGCTTATTAGGGAGAAGGTGA-GAATAAATTGTAAATGGAAATTATTACAATGTAAAATATGT--AGCAATGATTATATACATATATTATGCTCCTTTGAGGACATAACACAAAACTAGGAAATCAAATAGCACAACTAAAGCAGATATCAAATACTGAAA---GAGAAGTTGCACCACCAGAAGCAGTAATTCTGTTTTTAGTAGAAGTCTCCTGGCTGTACTAACTTGAGATCTTTACTGGCTAAAACAAAAAATCAGTCAACTGCTTCCATCCTTGTTAACTCAGTTCCTTCTGCTTTTTAGGAAAAACATGTAATTTCTCACTGAGGTCTCTTGCTATTCCAATTC s mm3.chr10 7671281 725 - 130738012 ACCACAAGAATAGAG-TTTATGGTTAATATTAATAAA--TGACCATTG--AACCCAGCAAGAATATTATATGACAAGTACTTGAACACTTTTAAGAAAG--AGTGATTTTCA-----TTTTGGCTAGGGCAAGAGGATATCAATGAGCAAAGGTGAAGTTCTATAACTGCCTGAAACATGGAAGCTCTCCAAGGGAACAGAAGAGATAGCAGGTCAGTAGGTCAATAGCCCCTACATTCTGAAGAAGGTAAGCTTCCATGATGGA-TTGTGCAC-TAGCCTCCACTCATGTACCCACACACTATCCACTCGCTTATTTAAAGTTCCACTGCAGGAATTTTTGCTGAAGATGTGTTCAATATATAAGCCAATGGTAT---------------TTGCTAAAAAAAAAACGTAATGATGAAATATGAGAATTCCAATAGAAATGCTGAGAAATCCATGGTGGATAAGTTACACTCGAAGATTAGTAAAGTGCAAAATATGTACAAAAAGGAGTCTAT-------TTGAGCTTG-TTGAAGATATAACACAAAGCTGAAAAATTGAATATCAAAATCACACCAAATACCCAGTGCAGAAAATGAAGAATTTAGA-CACCACA-GCAGTAATGTT-TTCTTATTAAAAATCT------TATGCTGACTTGGGACTTTTTCTGGATG----AGCATTGCAGTCAACTACTGTGAACCT----------GTTCCCTCTGATCCTCGCAAGAAACACTCCTCTCCTGAAGTAGGATTCCTTACATTCCAGTCC s rn2.chr7 60481125 684 + 139049774 acTACAAGCATAGAG-CTTATGGTTAATATTAATAAA--TGACCATGA--AAGCCAGAAAGAATATTATATGAGAAGTACTTGAACACTTCTAAGAAAGTGAGTGATTTTCA-----GTCTGGCTAGTCCAAGAGGATATCAATGAGCAAAGGTGAACTTCTATAACTGCCTGAGACGTGAAAGCTCTCCAAGATGACAGAAGAGAGAGCAGGTCAGTAGG---------------------ATAAGGTAAGCCTCCATGATGGA--TGTGAACAGAGGCTCCACCCATGTACTCACCCACCATCCATTCATTTACCTAGAGCTACACTGCAGGGATCTTTGGTGACAGTGCATTCACTATACAAGCCAACAGTAT---------------TTGCT--AAAAGAAATGTACTGGTATAATGTGAGAATTCCAACAGAAAGGCTGAGAAATCCGTGG-GGACAAGTGACCCATGAAGATCAGTAGACAACAAAATATGTGCGACAAGGGGTGTGT-------TTGGGCTTC-TTGAAGGTAAAACACAAAGCTGAAAATTTAGATATCAAAATCACACCAGATACCCAGTGCAGAAAAT-AAGAAGTTGGA-CACCAAG---AGCGAGTTT-TTCTTATTAAAAGTCT------TATGCTGACTTGGGACTTTTTCTGGATG----AGCGCTGCAGTCAACTACTG-------------------------TGATCCTCACAA-AAACCCTCCTCTCCCAACGGAGGAATCCTTAGATCCCAGTAC a score=96867.000000 s hg15.chr12_random 295992 671 + 590431 TGCTGCATTGTTATTTTT----------ATTTTAATGAGTGCTTGGAAGGTATTTATTATGTAATTTAATAGCAATAAATAAAGTAAACCTGGATGAGCTCCTAAAACATTTGCTATGTACCTGCTTATTTAAAGTAAGAAAAAATAGAA-CATTTTCCATAATGACCAGGTAAATGTTTATTTTGCTTAGTGCCTCTACCTCCAGCCTTCATCTTTT--TCTCTTACTTGTTCCTAAGTGTGGGCTCTGCCCATGAACTTACTGTTCCTTCTCCATCTGTGCTCGAAAACTATTGCCCATCTGTGCAGGGTGAGTTTCATTCAAACCAATAACCAAGAAGCAAGATCCAATGTCCTTAAGCACACTAGAAGGAAAGAATAATACCAAAAGAATCCTTCTGATCCATGAACAGGATTAAGTCTTCAACAGCTAACACTGTGATTAAATTGCTCTCTCTTGAGTTCTGGCTCAAAATTCCAGGCAAATTCCTGATTTTTAAAAAATCATACAATTCTTAATCCACTCATGCCACAAGTAAATAGAATGCCTGCTTCTAATCACATGCAGCAGAggtccctgaactttggtaggcatcaaaattatctgcattaccctttacaaatacatatgcccacgac-ccactacagacttatggaataaaactcatcggagataggggcaga s mm3.chr10 7673944 661 - 130738012 TGGTGTTTTATTATTTTTTGGTAACTTAATCTTAATGAATACTAGGAAGGTATTTGTCACTCAACTTAATGTCAATATATACAGTAAATGTGAATGAGATCATG----GTTTGCTATGTACAACCTTGTTTGGAAACCGTGGAGAAGGGG-CATTCTCTGCAATGGCCAGGTGAGTGTCTGTTTT-CTCCGTGCCTTTGCCTCTGGCGTGAGTCTCTTCCTCTCTTGCTCACTTCCATGTGTGGGCTCTGCGAGTGCACTCCCTGTTCCTTCTCCATCTGTGCTCACAAACTATTGCCCATCTGCTCAGGATAAGCTTCATTCAAATCAAGAAACAAGAAACCAGATTCTCTGTCCCTAAGCAGGCT-GAATGGAAACACGGCGCCAAAGGAGTCCCCCTGACCAGTGAGCCAGGCTACTCCTCCGACAGC-AGTGCTGTCCTTAAATTGTTCCCACTTAAGTTCTGGCTCCAAGCTCCA-GCAAACTCCTTA---TTAGAATAACATATGACCCTTAATCCAGTCACAGTGC-----------ATCTCCTCTCCTAAGCATGCACAGCAGAGGCTCATGAACCTGGGTAAATGCCAGAATCCTCTGCAATGCCTTTTACAAACACATAGGCCTGAACCTTCACTACAGGATAATGGAGTAAAATGTGCC-AAGATAGAAAAAGA s rn2.chr7 60481845 658 + 139049774 CAGCGTTTTATTATTCTTTGATAATTTAATCTTAGTGAATACTAAGAAGGTATTTCTCACTCAATGTAATGTCAATAAATACATTAAACATGAATGGGCTCGTG----GTTTGCTATGTACAACCTTGTTTGAAAACTGGAGAGAAGGGGGCATTTTCTGAAATGGCCAGGTGAGTGTTTGTTTT-CT--GTGCCTGTGCCTCTGGCATTAGTCTCTTCCTCTCTTGCTCACTTCCATGTGTGGGCTCTGCCAGTGCACTTACTGTTCCTTCTCCATCTGTGCTCACAAACTATTGCCCATCTGCTCAGGATAAGCATCATTCAAACCAATAACCAAGAAACCAGACTCTGTGTCCCTAAGCAGGCT-GAATGGAAACGCAGAGCCAAAGGAGTCCCCGTGACCCCTATGACAGGCAACTCCTCCAGCAGC-AGGGCTGTCCTTAA-CAGTTCCCACTTGAGCTCTGGCTCCAGGCTTCA-ACAAACTCCTCA---TTAGAAGAGCATATGATCCTTAATCCAGTCACAGGAC-----------ATCTCTGCTTCTAAACATACACAGCAGAGGCTCAGGAATC-GGGTAGATGCCAGAATCATCTGCACTGCCTTTTCCAAACACATATGCCTGAACCTTCACTACAGGATTATGGAGTACGATGTGCC-AAGAGAGAGGAAGA a score=54627.000000 s hg15.chr12_random 296678 1010 + 590431 atgaaatctc-caagaaaacttacataccaaattccaatgcacaccaaaacttaagaataactACTTTATAGACCAGAGCAATAATTA-----GTAATGGTCATACAATAATTATTAATTGGACAGGG--ATAAATATAAGTCACAACATAAATTATTTTACCGCCTGACAGA-TGATTTAACAGTCTCCCCTAATAAATCAAAATCTCT--TTGGAGGAAACAACAAATCTTAGTCACCTTTATGCCCAAA--CCAGTTGTATAGCAGACACTCAATAAATTTTAGAAAAATAAGTAAAAACATCCATATCCACATGAACATCTAATCAGTTTTATCATTTCATTTGTATGTAAGAAGA-CTTCTGtactgtatga----tctcacatgtgaaatctaaaaat----aaaaatcaaatacacaga--gagaaattaaaacagtggttaccagcggcagggtggagaggaaatggggagatgtaggtcaaaacagacaaagtagcagatgtataggattaacaagtcttgagatttgatgtacaaca-gagaatt--------------------------atagttaat-aatattgtattcaagatttttgct-aaaataatagattttagatcctcttaacac-aaaaaaggta-actgtggaata-----------tgtcaattttcttgactataataactatttcactatatgtatattaaaataccatgtaaaccttaaatacaCTATCTTccttctttgtctgcaggctctgcatccacaaactcgaccaactgcagactgaaaatattcagaaaagaaaagcattacaataaaaaatac---------aaactataaaaactatgtacatagcatttacattgtattagatattataa-----gta---atctagtgatcattta-------------aattttacaggaggatatgc---ataggttacatgca------------------------aattatacacag---------------------------------------ttttacataaggaacttgagcatccaca----------tactttggtaagcaag------gggagtcctggagtc----agtgc----------------cccacag----ataccaagagacgactgTATGCAATAAAATTTTTT------------AAAGAAA s mm3.chr10 7675075 1077 - 130738012 ACAAAACCCCACAAGAGAACTTGAACACCTAACTATGATACATA-CAACATTGGAGAAAACCCACTTCATAGACTAGAGGAGTAATTGCCTCTATAAT----------TCACTACCTATTTGGCATGGACATAAATAAAAGAAATAACCCCAATTATTTTCCC------CAAA-TTATTAGACTGACTCCTCCACTACACTGAAAACTCTGAGGGGGGGGGGGGATGTGTCTTCCTTACTTTCATGTCTCAGATCCAATGAAACCACAAA----TAATAAATATCAGATCAATAAACGAATATGTCTACAT--AGGTGAATATCAAGTCAGCAT--TCTTGCCAGCTGCACATAAGAAAATTTTCTGTAGAACATGAATTTCCTTATATGTAAAATCTA-----------------------------TAAGGAATAAAATA-TGGGTACC--------------------------------------AAGTACATAAAGTATCAGATACAGAGGATGAACAGGTCTAAAGAAATAGTGAAAAACAGGAGAACTATGTAGttaatatttttttaatattaataGTTAATGAATACTGTATTCAGAGTCTTTGCTGAAAATCATGTATTCCTGTTTTACT--ACAA-AAATAACATGGAATGAAGAATGAAGGACACAT-TAATtatatatatgtctatatata--agttaaacatatatatataattatatagag-------aaattatattatattatatgcttaattata------------------tagactatcctatgtataattacat-------agagagacattatattatatataatttacatattatattat--atattatgtatttattatataATGCATACTACATATTATATGAGACATACATATATGATAAACCTTAACATATGCAGTAAGAGTTTTAAAAGAAGTGAAGCAAAATGGCTCGCATTTATGATCCAATTACTTGCACTATAATAATTGTATCTAGTACTTTGCTTTTGACCAACATCTTCCCATTTTTCCTACCTTCTATCCCAGTATACTTGGTACCCACGGTTTGTTCTTTATCTCTGTGTACTAGACTTCTGaaaaattttagatttagaaatttaaatttataaatCTC-CCCAGAA----ATCTCAG--------TATAAATCATTACTTTTATTTATATCCATTCCAAATAAA s rn2.chr7 60483035 1011 + 139049774 ACAAAACCTCAGAAGAGAACTTAAACTCCAAACTATGAAATTCA-CAACATTTGAGAAAAACTACTTTATAGACTAGATGAGTAATTACCTCTATAAT----------TCACTATCTATTTGGCATGGACATGAATAAAAGGAATAGCCTCAATTATTTTCCC------CAAAATTATTAGACTGACTCCTCAAGCACACTGAAATCTCTG-GAGAGAAAAAAAATGTCTCCTCCTTACCTCCATGTCTCAGATCTAATGAAACCACAAA----TAATAAATATCAGATTAATAAATGAATACGTCTACAT--ATGTGAACAT--------------------------------------TTTCTGTAAAACATGAGTTCCCTTATATGCAAAATCTAAAATTTTTCAGAAATCTAATACACAGAGATAAGAAATAAAACA-TGGGTACC--------------------------------------AAGTACATAAAGTATCAGATACAGAGGATGAACAAGTATAGAGAAATAATGAAATTCGGGAGAACTGTGCAGTTAATGGTTTT--AATATGAATGGTTAATGAATATTGTATTCAGAATTTTTGCTGAAAATCATGTTTCTCTGTTTTACT--ATACCAAATGATGTAGAATGAAGGATGAAGCACACATATGACtatatatttttatatattt----------------tatataatcatatta------------------tatattatatgtataatcata------------------tagactatatattatataattatat-------agaga-----catgttatatgtcat---------atattgt--atattgtatattaattatatg--------------ttatat-----atatatatat-ataAACCTTAACATATGCAATAAGAGTTTTAAAAGAAGTGAAGCAAAATGGCTCACATTTATGATCCAATT-TTTGGACTATATTAACTGTCTCTGGTACTATGCATTTAACCAACATCTCCCCATTTTTCTTATCTTCTACCCCAGTATACTTGGTACCCATGTTTTTTACTTTATCTCTATGTATTAGAATTTTGAAAATTTTTAGATT----AATATAAACTTAGAAATCCCACCCACAGCCACATCTCAG--------TGTAAATAATTACTTTTATTTAAATCCAGGCCAAATAAA a score=136350.000000 s hg15.chr12_random 297688 1257 + 590431 AACCCCTAGACATACAAAAAGAAAGGGAAAAAACAAAATACCAAGACTTTCACTTCATTTGATCACTTAAAA----ATACTATGCAAAAAGGTACAACAATACAACGTTCCCAGGAAAGAAATGCATGTTCCTCTCACCCACTTTTTCCGCCAAGAGTACACTGTACATCTTGATTTTTAAAAGAAATGAAAATAAGCCATGTTATACATGATAGTCATAAAATTCTCAGGAAAAAATATTAGATGACTCCCAAACCCCTCACATAGCCTTCTCCCTCATAC-TCCCATTTGCTGACCTGATAGCTCATTACTGCATTGCTCCTTTGCAACATCTGCCCCAGATGATGTCTGCATATTTTCAAGAACAGGGTAAAAGTTTCTGTCCTTGCAACAAGGGACC--CACTAAAAAATT--CTAGACCCTCTCACTGGATTTGAGACGTCAGTGCAGGGAAAATGCAAAATAAGAAATGTAGACCCAGAATTACCAATGTGCAAG-TACAAAAGCATTCATCCATTGGTTTGTAATGATA-TCCAAATTC----CATAAATATAAAATTTGGTATGGTAAACTCTATGCACCTTACACTAATTCACTATTTTATTTATTCTGAACCTGTCCAAAAATAA------------------------------------------CAAATGTTTTCCTATTCTTGGAGCACTCCATGAAAACCGCTGAGTAAGGGCAGTAAAATAGGTTCTTCATTCCTAATAAATCATTATAATTTATGTTGTA---------------CTTGTCCCAT--TGGAGAGGATAATAAGAGGCTGCT-ATGCATAACATATTTCCTCAAA-AAAAT-------------TTTTCACTGGGTTCTTACTCACTCTGGACAAGCAATTGTAAAGCAGAAACTTGATGGTTGAGAGCAGGGCATTAAGCAATGTTGAGAGAGATCAGTTGCCAAATGGAGCTTAGAATAGGACTTTTAAAGGTAACTTGGATGAAATTAATGTTACATCACCTCAATATCAATGCTGCCTTTGTCATAAGTATGTTTGAGAATACTACT----AAGAACTCAAGGTAAAG---AAGAGAGATGGCTCTTCTAACTGTTGCATGAA----------------------------CAATCCTGAGATGCATATACACTTGCACAATCAACTTACAAGCTCCACCATTGTCACCAAA------GCAGATACCCGATCAAATTcagtacttctcaacctgcag-------------catgcatacgattcacctggagaacagacacat-------gagcactactcccagagattctgattcagtagcttgaggtgaggcccaagcatttgcatatccaaaaatctcctaggtgatgcagat s mm3.chr10 7676242 1248 - 130738012 AACCTTTAGGCATAAGCAAAGGAAGGGGAGAAATTAAACGCCAAGATATTTA-----CTTGGCCCCTCAGACTTTCATGCTTT---------TAC----ATACCAGGTCCC-----AAGAAATTC-TGTTTCTCCCACCTATCTTTTCTACCATGACTGCATTTTATGTCCCAATTTTGAAAAGAAATGAAACTAAGCCATGCTATATATGACAGACATAAATTTCTCAGGAAGAA--ATTGCATAACTCTCCACTCTCTCACCAAGCCTTCTCCCTCCTCCATCCCTTTTGCTGAGCTTACTGCTCACCACTGAATTCTTTC-ACACAGCGTTCACATCTGAGCATGTCCGCA---TTTCAAAAACAGAAGGACAGTTTAAGTCTTTGCCATAAGTGACCTTCACGAAACAATTTCCTGGGCC---------------ACACACCAATGTGCAGAAAATTCTGAGCAAGAAA---AGAACTGGAATTAT-GATTTGCAGGTTAGGGGA-----CATCCATTGGTTGGTAATGGCA-CGCACACTGCATGTATGTCTAGTACACTT-ATGTGTTAAAAATCTCCTAACTT-TGTCAGCTC-TAGTTGT---TATTCCTAATCTGTCCaaaaaaaaaaaaaaagaaaaagaaaaaagaaaaaaagaaaaagaaaaTGTCAGATATTTTCCTACTTACATTAGACTCCATGAAAACTGCTGAGCAAGGCTACCAGAATAGGTGCTTCATTCTTAATAAATCACCATCCTTGACGTCGCC---------------CCCATCCTCC--CAGAGAGAATCGTAAGAGACTCAT-GTGCAAAAC--ATTTCCTCAAA-CAAATCAGCCGACATCACCTCTCACTAGGCTCTGAATCACTCTGGACAAGAGTGTGTAAGGTAGAGA-GCGATGGTTGAGGGAAAAGCATTAAGCAATTTTGAAAGAGATGAGTTGCCAAATGGAGCTTAGAAAAGGCCTTTTAAAGGCAACCGAGATGAAAGTCACGGTACATTGCCACATCTTCAGTGCTGCCTTTGCCCAGAGTATGCCTGGGGCTGCCTCTCTCTACTTGATCCAGGAAGATGTTAGAGGAAGCGGTCCTTCTACCTGATGCTTCCA----------------------------CGTGCCTAAGA--CATAGACACTTGCGCCACCAACTCATAAGGCTCATCACTATCACCAAGAGACCTGAAGAGGCCCAGT---------------------------------------CATGTCTCTAG------AGAAAAACAAGCATGTGTCATAtgagtcccacccttgga-attctgatgcactaaggtatgaataggctcaaccagttgaatttctaaaaactctccaggagacacagat s rn2.chr7 60484130 1271 + 139049774 -ACTTCTAGGCATAGACAAAAAAAGGGGAGAAATTAAACAC-AAGAAATAAA----ACTCAACCGCTCAAAATTTCATGCTTT---------TAC----ATACCAGGTTCC-----AAGAAATT---GTTTC----ACTTATCTTTTCTACCATGACCACATTTTACGTCCCAATTTTGAAAAGAAATGAAACTAAGCCATGCTATATACGAGAGACATAAATTTCTCAGGAAGAA--ATTAGATAACTCCCAACCCTCTCACCCAGCCTTCTCCCTCCTACATCCCTTTTGCTGAGCTGACTGCTCACCACCGAGTTCCTTC-ACACAGCATCCACCTCCGAGCATGTCCACA---TTTCAAAAACAG--GGACAGTTAGAGGCTTTGCCACAAGTGACCTCCACAAAACAACTTCCTAGGCC---------------ACACACCAATACGCAGAAAATCCTGAGGAAGAAA---AGATCCGGAGTTAT----TTGCAGGTTACAGGA-----CACCCATTGGTTGGTAATGGTAATGCAAACTG----TATGGCTATGACTCTT-ATGTGTTAAAATCTTCCTGACTT-TGTCAGCTC-TCACTGTATTTATTCAGAATCTGTCCCCAAAAAA---------------------------------------TGACAG-TGTTTTCCTAATTGCAGAGGACTCCATGAAAACTTCTGAGTGAAGCTACCAGAATAGATGCTTCATTCTTAATAAATCACCATCATGTATGTTGCCAGGCCCTCCCCCCACCCCACCCCCCGCCCAGGAGAATGATAAGCGACTGATTGTGCAAAAC--ACTTCCTTAAAACAAATCAAGAGGCATCACCTCTCACTAGGCTTGGAATCGCTCTGGACAAGAGTGCATAAGGTAGAGA-GCGGTGCTTGGGAGAAAAGCATTAAGCAATTTTGAAAGAGATGAGTTGCCAAATGGAGCTTAGAAAAAAACTTTTAAAGGCAACCGAGATGAAAGTCACGGAACATTGCCACATCACCAACGCTGCCTTTGCCCTAAGTATGCCTAGGGCTGCTTCTCTCCACGAGCTCCAGAAAGAGGTTAGAGGAAGCAGCCCTTCTACCTGGTGCTTACACAGGCCAAAAGCATATAGACACGTTTGCCAGGCCTAAGA--CATAGACCCATGTGCCACCAACTCGTAAGGCTCATCACTATCACCAAGTGGCCTGAAGATGCCCAGTCAACTTCATTGCACC---ATTTGAAGTAAGAATAAAAACCATGCCTGTGA------CGGAAAACACACCCTTG------GAATACCACCCTTGGA-ATTCTGACACACTAA--CATGGATAGGATCAATCAGTTGAATTTCTAAAACTCCCCCAGAAGACACGGAT a score=76332.000000 s hg15.chr12_random 299518 914 + 590431 gaagacacacaggaagaagacagtcacgcaactagaagccaaggaacctcaagtattgctaga-gctagaagagcc-aaggaagcactctcctctagaggcttcggggagaacatggctgtgc-aacaccttgattttgaacttctggcctccagaactgtgtaacaacacatttctgttatttcagccaccccacttctggtacttcatgacagcagccctagaaagctaacacGAATATTTACAGGAACAAAACGAAGTACCCACGAATGACACTAAGAGGCCATGTTTAAAGGGAGAGGAGTGCTATACCATAGGACTGAAG-------AGGTCAAACTGAATATAA-----AGAGAGACATGTAAAAATTTCACAGAAACTTCCTAAACAATTATTGTTTTTCTAAAATGACCTTTCTGGTCAAAAGAACAACTTCAACAGGCCATGTGATTAGGAAATCTCAAAATATT-------------TTTGAG------CACTTGAGCCGTGAACAAGAAAGACTAATAATAAACAAACACTTATATGTCTAACAAGA-CCCTATTATTCAGACCGTTTTTAtcatttgttctcaaaacaatctgatgaggtaggcagtatctatattgttcatatcagaaactaaagctgag--aaaaaactaatctttatgtgaaattataagcctgcaggcattatgttattgatttaactgttttcttatgtaatatctacaatcttctgagggaggtgtcttatccacctttcatcggtcagaaaacacagaaatgt-------------tagg----------------------------------tcaatt------------gcccaagatcagagagctttgaa-------aaaaa-------gaaaaattttcaaagtcacatctattgcccccaaaactcatattctttgcatggcactataactggcctcc-tgTGGACTGGTGAACTCCATGAAAAAAGTTATTAAAGTGAGGAAGGTACT s mm3.chr10 7677537 918 - 130738012 GATGGTGTACGAAGAGAAGACAGCTCC-CAACTAGAGGCCACACAATTACAAATAGTGTTAGAGGGTAGAGGGAACAAAAAAGAGAATATC--CTGGAGAGTTCAGGGAGAGAACTGCTGTGTGAACATCT---TCCCCAACATCTAGCC-----------------------------TGTACCAGAAAGCCAGTTTGGGGTAATTTGTTACAGCATCTCTAAGAAGCTCACA-GACTA-TTACAGGAACAAAGGAATGTCCTGGCAAAGCAGGCT---------------------GAGGTGTTTTGTACCACAGAACCAAAGCAGGTTTAAGTCTAACTGAATTTAGGTTTAAAAGAGATATGTAAACTCTTCACAGAAATATCTTCATCAAGTATTTTCAATCTAAAATGAAC------------AGATCAATGTTAACTGGCCACAAGATCAGGAAATCTCaaaatatttttattattattatttGAGTTGACTCTTTTGAGATGTTAGCAGGAAAG-----------------CCTCATGTGCA-AATAGGA-TTTTATCACTAAAAAGGGTTTTAtcctttaccctcaaaagaatcaggtaagacaggtcatatttccattgtttaaataagaaactgaagctaagaaaAAAAATAAATATTTAGCTAAAATTATAAATGAACTGACAT--TATTATTGATTTTATTAGTTCCTATCTTATTTCCTATAAGACCATATAGAAGACATTTTATCTACTTCTCATAATGTAGAAAATTCAA-AATAT-------------TAAGTATGTGTATACATATGAATGTATGCATTCAAACTTCAAATTCAAATATGAAGGTACAAAATTC-AGAATATTAAGTATGTTTAAATATATGTACTATATATATTCAAACTCATATTTGTTGTGCCCAAAGTTCATATTCTTTATAGAGTACACTAACTCCTCCATATGTGGACCTTTGAACTCTATGAAGCAA-TTATCAGAATGAGGTAAGTATT s rn2.chr7 60485448 884 + 139049774 GATGGTGCACAAAGAGAACGCAGTTCC-TGACCAGAAGCCAAACAATTACAAACAGCGTTAGAGGGTAGAGGAGAC-AAAAAGAGATCATC--CTAGAGAGTTCAGGTAGAGAACTGCTATGTAAACATCG---TCCCCAACATC-AGTC-----------------------------TATCCCATACTGCCAGGCTGGGGCAATTTGTTACAA---CTCTAAGAAGCTAACA-TGCTA-TGACAGGAACAAAAGAAGAGATCAGCAGAGGACGTT---------------------GAGCTGTATCGTACCACAGTACCAAAGTGGGAATAAGTCTAAGTGAATTTAGCTT--AAAAAGGTGTGTAAAAACTTCACAGAAATACCTTCATCAAGTATTTCCAATCTAAAATGAAC------------ATATCAATGGTGACTGGCCATGAGATCAGGAAATCTCAAGACTTTTTTATTATTATTATTTGAGTTGACTATTTTGAGATGTTAGCAGAAAAAG--AATTA-AAATCAACCCTCATATGCCTAACAGGATTTTTATCATTAAAAGGGGTTTTATCCTTTATCCTCCAAAGACTCAGGCAAGAGAGGCCATATTTCCCTTGTTTAAGTAAGCAACTGAAGCTAAG-----------------------ATTTATAAGTGAGCTGACAT--TGTCATTGA-TTTACTGGTTCCTATCTTATTACCTATAATATCATGTAGAAGACA----ATTTACTGCTCACAGGTCAGAAAATTCAG-AatatatatatacatatatatacatatatatacacacacatatatatatTCAAACTTCAAATTCAAAGAGTAAGATACaatattt-agaatattaaa-------------------tatatatattCAAACTCACATTTGTTGTCCTCAAAGTTCATATTGTTTAAAGCGT--GTTAACAGCTTCCTATGTGGACCTTTGAATTCTATGAAGCAA--------AATGAGGTAGGTATT a score=85842.000000 s hg15.chr12_random 300432 748 + 590431 GAAAGTGGATTTCGGAAACTAAAGCTTTGTAACTTTACAGAAATAGTTAAAAGATATTTCTCTTATCTAGGACATTGTGCATAAGGTGGCTGAAGAAACCATTCACATAAAGGTAATCAGAGTTTATTGCTGACAAAATAA---AATA-TTTTCCCACAAATGTGTTAGTAA---AATGGCTTTTCTGGTCAGGTGAACAACTTTAACTGGTCATCT--------AGCTAAAGGCAGAATTTGGAAGTAACTATCTGAATTGCATGTATACTTAGTTATTCCTCTCCTCAATAAAGAGTAAAAAATCATC--AAGACATAAACCATA-GGTACATTACAATACAGAATCTAAGTGCTTTTATTAACATCATGTTTTTGTGCTATGCTTAAGATTACATAAAGGTTTATGCTTTAATAAAGATTTCTCACA-ACCCTAGAAG-----ATTTTTTTCAAAGATTATCCTACTTCATTTTAAGGCAAACTTTC-ATTCAGATGTAAATTCTGAAAGAAGATTTCAATATTGCTTAAAA-TACAAAAATACAAAAGAGCAAATGATATAG-CATTCTTTTTATTATGAAATGCTTATTTTCagaatcccagagctataaaggatctctgagaggcatttaatttatccatGTGGTCTTAATACTGTATATTAATGTATTTCAAATAATGATCAGGATGGAAAGTCTCAAAGAAGGCCGCCTCCATTGTGGCAACTCCTTCATATCTGAAGGGAATCCTCAAGGCAGAAGACACCCCTTC s mm3.chr10 7678820 703 - 130738012 GAAAATGAAGTTATGAAACTATAACTCTATGACTGTGCAGAAATAGACAGAAGAGGTTT------------ACTATGTGCATGAAGTAGC-------AATACTTAC-----GGT-----AAGTTTGGGTTTGCCCAAATAA---AACAGTCTTCTCACAA---TGTTAGTAA---AATGGCTTTTGTGA-CAGGTGACCAAATGTAACTGGTCGTGTGTCAGGAAATCTCAAGGCAGAAGTTGGAGTCCACGATTGGA----CTCATATACTCTTCCATTTCTTTCCTTATCAATGGG-AGGAAATCAACCTGAGATGCAAGCCATATGGGGCATTGCACTATGAAATTTAAGTATTTTTATTAACATCATGTTTTCTCACTAGAGTTATAAGTAAATAAAGCTTCATGGTTTAATAAGGACTCCTCGCAGGACCTGGGAGTTTTTTTTTTTTTCAAAGATAATCCTATTTCATCTTAAATCAACTTTTCCACACAGCCTTAAA--CTGAAAAAGAATTTCAATGTAGCTAGAAATTTT-------TTAAAGGAAAAAAGATACAGCCATTCTTTGTACTATTAAATACTTATTTACAAAA-CATAAGGATATAGCATATC------------TTAATTTATCTATATTGTTTTAATACCACATATTAATGCTTTTTA---AATTATCCTGATAGGAAGTCTCCAAGAGAGCTGCAACCACTGTGACAGCTGCTTCATATTTGAAGGAAA---TTAAGACAGACTACAGCCCTCC s rn2.chr7 60486673 704 + 139049774 GAGAACATAGTTATGAAACGGTAACTCTAAGACTGTGCAGAAATAATCAGAAAAGGTTT------------ACTTTGTGCATGAAGTAGC-------GATATTTAC-----AGT-----GAGTTTGGGTTTGCCCAAATAGAATAATAATCTTCTCACAA---CTTTATTAACACAATGGCTGCAGTGA-CAGATGACTAAATGAAACTGGCTGTGTGGCAGGAAATCTCAAGACGGAAGTTGGAGTTCATGGTTGGA----CTCATATACTTATCCATTCCT----TTATCAATGGG-AGAAAA-CAACCTGAGACACAAACCATATGGGACATTATACTATGaaatttaattttttttattaa---tatGTTTTCTCACTACAGCAAAAATTAAATAAAGCTTTATGGTTTAATAAGGACTCCTCACAGGATCTGGGAG---GCTTTTTTTTCAAAGATTATCCTATTTCATCTTAAAGCAACTTTTCTACACAGCCTTAAA--CTGACACAGAATTTCAATATAGCTAGAAAGTTTAAAAAGAGAAAAGAAAAGAAGAAACAGCCATTCTCTGTACTATTAAATGCTTATTTTCAAAA-CATGAGGCCATAACATATC------------TTAATTTATCTATATTGTTTT-ATACCACATACAAATGTCTTTTA---AATGATCCTGAGTGGAAGTCTCCAAGAGAGCTACAACCACTGTGGCAGCTGTTTCATGTTTGAAGGGAA---TTGAGACAGACTAGAGACCTCC a score=17209.000000 s hg15.chr12_random 302076 105 + 590431 TTTTCATTCCTAAAACAGAAATGTAAAATATGT-CATTTTAATTCACAATATTTTAATGTATGTATTAAATCCTGCTGTATTTAAG-------AAGAATATTTTCATTTAATT s mm3.chr10 7679523 113 - 130738012 TTTCTGTTCCTATAATAGAAATATTAAGTATGCAAATTTTAATTAATTGTGTGTCACCATATGTATTAAAGCCTGCTTTATTTCAGATGGGTTAATAATATTAGCATTGAATT s rn2.chr7 60487377 113 + 139049774 TTTCTCTTCCTAAAATAGAAATATTAAGTATTCAAATTTTAATTAATTGTGTCTTACCATATGTATTAAAGCCTGCTTTATTTCAGATGAGTTAATAATATTACCATTGACTT a score=35454.000000 s hg15.chr12_random 302661 346 + 590431 TAACTGAATCTCAAGtattaattaaatatatctttaaattttaCTTGGTGT------TTTTATATT---------------------AAGCATCTTGCAAGGA--ATCTAAGA------TCTTCAAAGGTAAGAATTATATCTTGCATATAATACATGATAGTTTCATCCTATGTCAAATCCATAAATCCCTACACATTGATTGAAACCACATGCTGGGGCATTTTATGGAGATTTGTAAAAGCTTTGCTGGCATTAGATTGAAG----GCTGTATTAACAATTATGATAACTACTTTGGAAAAATAAAACAAACGAGGGAAAGCACAGAAAAGT--TACAAGTGGCACTTGTTCTAACACTCTAAAGCAAATATAATCCCCTTCAA s mm3.chr10 7679636 345 - 130738012 TAAATTAATCTCAACTATTAATT--ACATATCTTTACATTTTACTTGGTGAAATGTTTTTTTTGTTTCATTCCTGTTGATTTTGGAAATACATCCTGCACCAACTACCTTAAAAGAAGTTTCTCAAAGGAAAAGACAATGTCTTA-ATAGAGCATGTGATATTTCCATCCTGTAGTCAATCCATAAAACCCTACATA-----------------------CCTATGATAAAAATTTTATAAACCTTTTCTGGCATTGGATTAAAGAAATGATGTGTCAACAGT-----TGGCTACTTTGAAAAAGACAAAAAAAAGA--------GTGAAAAAAT--TCCCA-TAGGACTAACTCTAACTGGTGAAGGAAAATACGATCATCCTAGA s rn2.chr7 60487490 351 + 139049774 TAAATTAATCTCAAGTATTAATT--ACATATCTTTACATTTTACATGGTAAAGTG--TTTTTTGTTTCACTCCTGGTGATTTTGGACATACATCTTTCGCCAACTACCTAAAAAGGAGTGTCTCAAAGGAAAAGACAATGTCTTA-ATAGAGCATACGATATTTCCATCCTAGAGCTTATCCATAAATCACTACATA-----------------------CCTATGAT-CAAATTTTATAAAGCTTTTCTGGCACTGGATTGAAGAAAGGATGTGTCAGCAGT-----TGACTACTTTGAAGAAGAAAACAAAGAGAAACACAG-AAAAAAAAATAATCCCA-TGAGACTCGCTCTAACTGGTGAAGGCAAACACAGTCATGCTAGA a score=85031.000000 s hg15.chr12_random 303007 924 + 590431 TTC-----ACAAAACT-ATTAATT-ACTCTCGAGGCTTGCAAGTGTTCTACACAATCTGCAAACCTT-TTTCCATCTTTGCAATGCATACTTTCAGACATAGAGGTATTTGAGAACCCACTAACAGTATGCTCCTAAGGTATTAT----------------------TGGGCAGTGGGTGTTAAAAAAAAAAAGTATTTTTTT------AAGATACCAGGAAAACTCAGATTCCAAAATCTCCTCTACTCCTCATGTATTTCCTATTGTTTGAATTGCCGAAAGCTTTTTAGTTCAAGTTCTTAATACTAGTAAAATTGGCAATAATCTGAG----TGTTTTAACATTTGAAA-CTTCTACCATATTTATACTACTTAGAGTAACAAAAAGTCTATAATTACAAA--AAGTGG-TGAGAGGAAATGGATCACAAGGATGCTAAGAATCTAAGTCTGGGAAA--GGGGCTATCAAAAGGGAGCAAAGGGCA--AGATTCTGGGGATAAAACAAGACCAAGTGTGGACATTTCCCACAAGTAAAGAAAGCCCGCATAACCTGAATTCTGGCTTACACCAGGCAGGTGTCAGCGTGGCACAGACCAAGAGAACCAGGACT-AATAAACATGAAGATGGCAAGTGATTTTCAACTCAGGCTCCTGCTCTTTTT-GTCCAGCTCCACTGTTTGCTTCCTACCTGCTGTTAAATCAACAG----TCCTAGGCAGACTTCAGTCACGTGCCAAACAACATGGGGGCCAACTGGTTTTGGAAAAGTTCATGAGAACTAGGCTCCATCTTTATCTTTCTGCCTTTTTAGGTACTGCTATCCAAATGCTGGTTGAACAGCTGAGCTTAAAATCTCTCCCAGATATAATGGAAAAATGAAGGCAAACGATCAATCTCCTGCAAGCTTCTAAACCATGTGAGAACAGAATAAGACCCAGGATGATCAGGCTGAATTCTGCTTCCCCTAAA s mm3.chr10 7680177 909 - 130738012 TTT-----AAAAATCTCATTGATT-ACTTATGAAGCGCATATTAATTTTACAGGATGGTCAAGCCTTCTTTTCATCCTTGAACTGCA--TTCTCAGATATAGACG-TTTCCAGAATCCATCAGGAGAATGGTCCTATGGTTCTGTATGCCCCTTCTCAGAAGGAATTCAGCCACAAGCTGCTAAGGAATTATACATTTTTTTTTCTCCTGAAATACCAGGAAAACCCAAATTCAAAAACCTTCTCTAACCCTCATATAATAT---GATAATGTACTGTCCAACTTTTCTTA----AAACTCTT-----------ACCTGATAACAGGCTGGG----AGTTTTAGTATCTTAAAGCTGCTATCATTTGCACATAACTTAG-----CAAAAGACC--TTGTTGCAAAAGAAGTGAAAAAGAAAAAACGGGCCAGGAGGAGTCCTGGAATCTGAGACTGGAAAAA-GAGACTCCTGAAAGGCAACAAAGAGTTACAGAGTTTAGAGATAGAACTTGACT-------GACATTGCCCACAAGTGGGAGGAGCCTCACCAACAAGAGGGCTGCTTTATACCATGCAGACTACTG-GGAACACA-GCCAGCAGAACAAAGCCTCAGTAACCACAAAGGCAATGAGCAACTTCCAGCTCAGACCTCTCTGCTTTTTCATCTGGTGCTGCTTTATACTTCTTACCTGCTGATAAATCAAGAATTTCTCTTAGGCACTTTTTGTCTACATGCCAAACAAAGTGAGGACCAAGTAGGTTTTTAAAAGCCTGTAA------------CTCTTTATCCTTCCTCCATT-----CACAGATGCCCAAATGTGGGTTGAGCAGCTGGGCTCAGAATTTCTCCCAGGTACAATGGAGAGAAG-AGATGAGTCCTCAATTTTCCTGAAGTTTCCCAACCACGAGAG-AAATAATAAGGCTTAAGATGGTCAGGTTAACTTCTGCTTCTC--AAA s rn2.chr7 60488827 912 + 139049774 TTTTTATAAAAAATCTTATTGATTTACTAATAAAGCTCATGGTAATTTTACACGATGATCAAACCTTCTTTTAATCCTTGAAATGCACATTCCCAGGTACAGAAG-ATTTGAGAATCCATTAGCAGAATGGTCCTAATGCTCTATATCTTCCTTCTGAGA-GGAATCCAGGCAAAGGTTGTTAAGGAAGTGTACATTTTCTTT-CTCCTGGAATACCAGGAAACCCCAAAATCAAAAACCTTCTCTA--TGTAATGTAATCT---GAGTATGAACTGTCCACATTTTCTTA----AAGCTCTT-----------CCCAGATAACGGGCTGGGTGGGAGTTTTAGTATCTGAAAGCCACTATCATTCCCACACAGTGCAG-----CAGAAGACC--TAGTTACAACTGAAGAGGAAAAGAGGAAATGGACCAGGAGGAATCTTGGAATCTGAGTCTGGAAAAAAGAGACCCCTGAAAGGCAACA--GAGTAGCAGACTTAGGAAGCAAAGCTTGACT-------GAACT--CACACAAGTGGGAGGAGTCTCACAGGCACCGGGGCTGCTCTCCACCAAGCTGACTACTG-GGAATACAAGTCGGAAGAATGAAGCATCAGTAACCATGAAGGCAGTGATCAACTTCCAGCCCAGACCGCTCCGCTTTTT--TTTAAT-CTACTTTATACTTCTGACCTGCT-ATGAATCAACCATTTTTATTAGGCTTTTCCACCCTACATACCTAAGAAGGTGAGGACCAATTACTTTTTTAAAAGCCCATAA------------TTCTTTACCTTTCCTCTTTT-----CACATGCATTCGAATGTGGGTTGACCAACTGGGCTCAGAATCTCTCCCAGGTACAATGGAGAAAAG-AGGTGAGTCCTCAGTCTCCCTGAAGTTTCCAAGCCATGAGAGAAAAGAATAAGTCCTGGGATGGTCGGGTCCACTTCTGCGTCTC--AAa a score=251167.000000 s hg15.chr12_random 303995 1917 + 590431 TTTAAGGCCCTGGATACCAAA--GACAACATTCTTTTTGCAGGGAAGAACAGACTGAATCATCCGTTAGATATAGCAATAGCTTTCTTTATGGAGAAACCTAACTAGCTTATCTGGCAGACATCTGAGGCACAGATACTCTTTACTTAATGTAGACACAGCCTAGGTCGTACAGAAAAATAAATAAGAATGTACTTCCAAAGAAATATAAATCCATAC-AATTAAATTGATTTCATTCATGCTCCAGTTGCCCTGTTCATTTCCAA----CTTTTTTTATGCTGATACCTTCCCTC-CCAACTTCTCTGTTCATGCTTGGGCTCACACATTCTCTTAATCTGTTAATTATCTGTATTAGTTATTCATTAAATACTATATGCTTTTGGCTGGAACCTGACCAAGAAATTTTTTTT--AAGTTTCATGCTCTCCTGGGAATAACTTATAAGACAAAAATCCAGATTTCATCACACGATGC----------------------------ACGTAGTGACCTCCCTGGGGGAGATGTTACCAGTAAAACAAAGCTGC-------TTTCTGTCAAAGCAAAGTGCTGTGGATTCTGAAATTTG--AAGCCAAAAATAAAATATTCACAAACAACCAAAATAT-TTATGATTAAAGATGTTATGCTTTCAAAATTATGCTCTACAAAC--TTTTGCTATGTCTTCTATTAAAAAGCAGTAGCCTAATGCTAAAGTGTCAGATTCTAACCTGAAGCTATTTTAGATGTTCCTGTTTTTAAAAATTGAGAAACACTATATGTAGAGAATC----TAATGTTTTTTTCTTTTTCCTCTCTCCTTACCAAAATCAATCAAATTACAATGGCTACCCAGAACAGTATGAGGGAAACTTTATCATTCACAACACATACATAACC-----------------AACAGCAAGGAGGCTACCCTAACCAGTATTGTATACAGAGTGTCAACAAAAGACAGGAAAGAATACAAACTGCCTGCTGTAAGGAAGACCAGAGCAAGAGATCTGAGAGCTAACGGAGAACTTAAGAATGAGAACTGTGATCCAAAAGAAATTCTGAGGGAAAATAAGATGAATGGTGAAATCGGAAAGGAGGAAAACTAGCTAGAGAAATAAGAGGCCCCAGA-TAGATAGGGATACAAAGGTCAAAGTAGCCCATGGCCATAATGATGGATTCAGAAAGCAATA-TGCTATAATTTGCTCTTTAAAAATTAGGACTGGATCCAAAAGATTAAAGTGTGTTTCTGATATTATTTGACCCCAAAATTCAACCTGCTCCCGTGTTTGGTGTGTATCAGAGCTAGAAAAATGAGTCAAGATAAGTCAGTTCTTGCACTGATTTATTGCCATCCAATTAGGAAGCTCTTGGCTCACTGATCAGAAACAAAGATTAAAGGAAAAAAAG-----ATACCATAAAAGCTAAAACTTCTGCAATCTTCTATCTCAACCGACTATACAAAAAGATATGCAGTACCTAATTTAGTAAGAGTTATAAATCACTGCAAGTG-------CTAAAGAAAAAAAAAA------CGATGTTAACATTTAAACATA-------------TTTCTTCTGGATTTTGGTGTATTATTATGTCACTGATAAAAA-TATTTTTAAATGAAGCTTTAAATGCCCTGATTTTGGCTGTCT------ACACAGAATAAATCTAATATAAAACCATACTTA-------AGTAAAAAATATTTATACCAATATAAAATACTCTACAGATTTCAGTAAATATTGTTGCTATAATAGTTATTTGGCCTACTTCTTTCTAACTCCCTATGCCTTACTAAATCAGCAAACACATTGTTCAGCGTCCATAGATGAATAACTAACACTATGTGATGGAAGGATTTGTCTTAGTCTAATGGTTATTTGACAGATTACTTCTCTGTTCATTAGGGGATGTTATTAT-----TTCAACATATTATTTGTAAAACCTTTTAAAACATTATTTGCAAAATTTTAAAGTATACCTTTATTTTTTATTA s mm3.chr10 7681242 1912 - 130738012 TTT-AGGTCTTGGATATTATATAGGTCTC-TCCTTTTCAGAAGGAAAATCAGAATGTA-TAACCGCTGAACTCAGTAATGGGA-CCCAAGTGGCCAAACCAAACTGACTCCTCAGACAGACATCTGAGGCACAGAACCTC-------AGCACTGACATA-CAAAAATAACCCAGCATATGGAACAAGACTATAATTCCATGGAAATATAAGTACCTACAAATTAAATTGAGTTCATTCATGCTCCAATTGCTCTGTTCATTTTGAA----TTTTTTTACTGTTGATAATCTCCCCCCTCTGCTCTGCTGTTCCTGCTTGGACTCACTGGGTCTTTTAATCTGCTAATTATCTGTATTAGTTATCCATCAAATACTATATGCTTTGGGTTGTAACCTCACAAAGACTTTCTTTTTGAAAGTTTCATGCTCTCTTATGAGTAACTTTTCATAGGCAAGTCTGGAATCCATCATATGGTAGGCCaaaaaaaaaaaaaaaa---------aaaaaa-----TTCTCCAGACAAATGCCTCAATTAAAACAAGGCCCCGTGTTCTTTTTT-GCAAAGCAAAGCTATGCAGGTTCTGGATTTTTTTAAGCCA-----AAAATATTCAAAAATCCACAAAATATATTATGGGTCAAGATTTTATTCTTTTGAAATTAAGCTTTGCACCCCCACCTGTCATGTCATTTATAAGAAAATACAAACGTAATGCAAAAGTCCCAAGTGCTAACCTGGGGCTGTTTTAAATGATTCTGCTTGT-AAAATTGAGAGATACTATGTGTGGAAAATCGAAATGACATTTCTCT-GTTTTCCTCTCCTCCAAACAGAATACATCCAATTACAATGTT-------------GTGAGGGAACCCTTGTCCTTTACAACGCATATATAACATACATAACAGATAAACAGATA-CAGGGAGGTT-CCCAAACCAGCACTCCATGCAAGGCACCAACAACAGCAAAGAGAGAGT-CCAACTGACTGTCCTCAGAAAGACCAGACCAAGAGAGCTGACAGCCAGCAGAGAGCTGAAAAATGAAAGCTGTGGGCTGAAGGAAATG-TGAGGGAA-----GATGGATGATTAAATCAGAGCGACAGAAAACTGGCTAGAGAAATGAGGCGCCCTGGATTACGCTGGAGCGCAAAGGTCAGAACATCTGTGGGCTCTAATGACAGACTCAAAAAGCAATAATTCTGCAATTTGCTCTTTAAACACTAAGACAAGATCCAGATGAT--AAGTGTGT--------------GACCCCCGAATTCAACCTGCTTCCATGTTTGTGATATATCAGAGCTAGAAAAATGAGTCAAGATAAGTCAGTCCCCACATTGATTTATTGCTATCCAATTAGGAAGCTCTTGGCTCACCGATCAGAAACAAAGATTAAAGAGAAAAAAAAACATATACTATAAAGGCTAAAA-CTCTGCAGTCTTCACTCTCAACTGACTAGACAAAAAGATATGCAGAACTTAATTTAGTATGGGTTATAAATCACCTCAAGTGGGTGAGGCGAGAAAAAAAAGAAATAAAAAAGATGTTCTCATTTAAACATGT------------TTTTTTCTGGACACTGGTGTATTGTTATCACACTGGTAAAAAATA-TTTTAAAGGAAGTTAACAGAGCCCTTAGTTTGATTGTCCCTTCTCAGACAAAGTATATCCAACAAAAAGCAATCCTTATGCAATTAGTAAACAAAGATGTCGCCAATATGGGGTGCTGTGCAGATTTAAGGTACTATTGTGCTTAAAATTGATATTTGACATACTTAATTTGAATTACCTCAGCCTCGGTAAATAAACAAAGACGATGGTCAGGATCAGTTCATAAATAACCAGTATCAGGACTGTCAAGGATTTGTCTCCATCCAATGGTTACCTGACAGCCTGCTGTTTCATCCATTAGAGGATGCTAATAC-----TTCAACACATTAGCTATAAAATCCCTGA---------------------------------CACTTCTTAATG s rn2.chr7 60489803 1899 + 139049774 TTT-AGGTCATGGATACTATA--GGCCTC-TCCCTTTCAGGAGGAAAAACAGAATGTG-CGCCCACTGAATGCAGTAATGGGGTCCCATGTGGGCAAACCTAACTGGCCCTTCGGACAGAAGTCTGAGGCATGGATCCTC-------AGCATAGACATA-AGAAAATCACCCAGCATATGGAAGAAGACTCTAACTCCGTGGAAATATAAGTACCTACAAATTAAATTGATTTCATTCATGCTCCAATTGCCCCATTCATTTTGAACATTTTTTTTTAGTATTGATAATCTCCCTC------TCTGCTGTTCATGCTTGGACTCACCAGGTCTCTTAAGCTGCTAATTATCTGTGTTGGTTATTCACCAGATACTATGTGCTTTGGGTTAGAACCTCACAAAGACTTTCCTTTGGAAAGTTTCGTGCTTTCCTATGAGTAACTTTTCATAGGCAAGTCTGGAATCTATCATATGGTAGGCaaaaatataaaataaaataaaataataaaaaaCTAGCTTCCCCAGACAAATGCTTCAGTTAAAATAAAGCGACACTTCCTTTTCTCGCGAAGCGGAGCTATGCAGATTTTGGATTTTT--AAGCCA-----GAACTATTCAAAAGT---------ACATTACGGGTAAAGATTTTATTCTTTCAAAATTAAGCTCCGCATCC--ACCTGCCGTGTCGTCTCTAAGAAAATAAAAA-----------GGTTCCACGTGCTAACCTGCAGCTGTTTTAAATGGCCCTGCTCAT-AACATTGAGAGATATGACATGTGGAAAATCAAAATGACGTTTCCCT-GTTTTGCTCTCCTCCAAACAGAACCAGTCCGATTCCAACGTCTATCCATG-----GTGAGGGAACCCTAGTCCTTCACAACACATACATAACA-----------------GACA-CAAGGAGGTT-CCCAAACCAGCGCTGCGTGCAAGG-------------GAAGAGAAAGT-CCAACGAACTGTCCTCAGAAAGACCAGACCAAGAGAGCTGACAGCCGGCAGAGAGCTGAAAAATGAAAACCCTGAACCGAAAGGAATG-TGAGGGAAAGGAAGGTGAAGGATTAAATCAGAGTGACAGAAAACCAGCTAGAGAAATGAGGCGCCCTGGATTACACCGGAGCACAAAGGCCAGAGCAGCCGCGGGCGTTAATGGCAGATTCGAAAGGCAATACTTCCGCAATCTGTTCTTCAAACAATAAGACAAGATCCAGATGATTTAAGTGTGTTTCTGATAGTATTTGACCCCCGAATTCAACCTGCTTCCATGTTTGT--TATATCAGAGCTAGAAAAATGAGTCGAGATAAGGCAGTCCCCACATTGATTTATTACTACCCAATTAGGAAGCTCTTGGCTCACCGATCAGAAACAAAGATTAAAGAGAAAAAAA--TATATACTATAAAAGCTAAA--CTCCGCAGTCTTCACTCTCAACTGACTACACAAAAAGATATACGGAACTTAATCTAGTACGGGTTATAAATCACCTCGAGTGGGTGAGATGGAAAAAAAGAGAAA------AGATGCTCTCATTTAAATGTGTGGTGTTTTTTTTTTTTTTCTGGACACTGGTGTATTGTTATCACACTGGTAAAAA-TA-TTGTAAATGAAGTTACCGGCGCCCTTGGTTTGACGGTCTCCACTCAGACAAAGTATGTCCAACACAAA-CAATCCTTATGCAGCTACTGAA----GATGCATCCAATATGGGGAGCTGTGCAGACCTAAGGCGTCACTGTGCTTAAAACTGACATTTGACAGACTGTATTCGAATTGCCTAGGCCTCGGTAAATCAACAAAAATGATAGCCAGAATTGATTCATAAGTAACCAGCACCAGAACGGTCAGAGATTTGTCTCTGTCAAATGGTTGCCTAACAGACTACTGCTTCTTGCATTAGAGGATGCTAATACAATGCTTCAACATATTAGCTATAAAAACCCTGA---------------------------------CACTCCTTAATG a score=136450.000000 s hg15.chr12_random 306006 1132 + 590431 ATAAGTTTATTTTTTATTCATTAGGTTAACACCCATAGAAAA--TGTGCATCAGAAAATGAATATCATCTTAAAACAAGGAAAGTAAAATAGTAATAATAATAATTAGGTCAGGAACTGAAGCATCAACAAGTGTACTGATTTAATAATAAGTAATAAACATTCTCTTATCAAGAGATTT----------TGATGTCTATTCAGCACCTAACTGGTAGCAAGATCTATGAGACA-GAAATAAGGTAGAAAGAGAAGAAAGAAgagcaaacaaaggaaggctaggtcgcagaaagcctggagtttaggccctc-actgataaactgtatgatatttggcaagtgacaacctctataaacctcaattttctcttaatataagagcacaacttatgtcccaggatcatcataatgattcaattagatggtgtaggtaaTATTGTTTTACAAATGATAAAGCTCTATATAATATAAATTTATTACTTCTGCTAATATTTAGCTGAACAGAGGAAACAACTTCAGAAATAATGAAGACTAAATTTGGTTAGATGCCAGGTTTATTTGATCACAGAGTACTGTTAAGGTTTACTAATTTAATTTCCAATGTAGCTTTTCAAACTTATTTATCCAAAGTGTTAGTTTGCATTTTTTTAAATACCTATT-------AAACCAAAACCTAACCATGTAATTAATAAATCATTTTCTTTCCTTGAGGTATACATAGCCAAAGATATAAAAGAATTGTCATTTTACTACCTAAGAAAGTTTTTTTAAATATTAAGAATAACCTTTTGTGCCTACCTCAGTCTACCTGCCTTCAAGA---TTATAGTTCCAGATTCC---AAATGCCAGAATGCATCTAAATGGAGGTTAAAAAGGAGAATATGCA--TG--------CTGAAAGTTCCTAAATAGAACCTCTTCACAAGTTCTAGATGTGTAGGTCTTCAAAATATCACAAGAAAAACAAAAAAACATAACCACATAAATTCCTGCTTTAAAGGAAAAA-ATGTGTTACGATAAAGTGATCTTTGAAGCAAATCTTTTCAAATAATTTTT---------------------------------------------------------TGTGATC-----------------------------------ACCCTAAGATGATTAGAGATTGCTTCTAATTCGG-----AATTAATCTTTCAAATATCTGAGTTGAATAGTT-TTGATAACAGCAACACAAGACAATATT s mm3.chr10 7683154 1177 - 130738012 ATAAATTTAAGTTTTATTC-----TTTAACACACAAAGAAAA--GGTAATCAGGGAAATAAAG---ATGTTAAGATTAGGAAAGAGGAACAACAATTATAATAATGAGGTCAGGAACGGAAATATCAACCTGTACACTGGCTAATTAGCAAAT-ATGAGTGTACACTAACCAAGAGATTTTAATCAGCTCTGATATCTGTTCAGT--------AGTAATAAGATCTATGAAACAAGGAACAA------------------CTCAACAAAAATGGAACGGCCAGA-CACAGTCAGCATGCATTTTAGGACctctgctgataaactacatgatatttggcaatttataaccttcctagacctcaatttt-tcttagtttatcagggcatcttatgtcccaggatcattgcaatgattaaattagatcatgTTGCAAGTATTATTTT--AAATGATAAGTCTCTATATAATATAAATTTATTACCACTACCGATATGCATC-GAAAGAAGCAAACAGCCTTAGAAATAATGGGCAATAAATTTGATTACGTGTGTGGTTTATTTGATCACAGAATGCTATTAAGGCTTATTAACTTAATTCCACATGTA-CATCTTAAAC--ATTT----------TTAGCTGGAGTTTTTATAAGTACTTGATAAAGAGGAAAACATAGTTTAACATGATGGTTAATAAATTATTCTCTTTCCTTCAGGTACACCCAATCATAAATGTAAGGTACCAATCTTTTTACAACCTGAGAGAGCTTTAAAAAAAAATAGCAAAACTCATCTGTTCTTTTC-CAGTATAAGTGCCTTCAAGAACCACTTCCTCCTAAATTCCCTGGAATGCCAGGGTGTGAGTAAGTAGAAATCAAACTAGAAAATGTGGAATTGTTTTTTGTCTGAAGACTCTCAGATAATACCCCCT------TCCTAGGTA-----------------TCACAAGAGAAAT-GCAAACCACAAGCACACAGGTCCCTGCTTTAAAGACCAGGTATATGTTACAA-AAGGTGGGCTCTGGAACTAACCTTCCACATTAATCTTTACA--------AGCTTAATTCTTTGACAAGTGCGTAAGCGCATGTGAGGCATTTGGATGAGATCTGCCCCACCCCCAATTCCTACTTTTATGTGACAATGTCTTAAAAATCTTAGAGACTGTCTTC--TTGGGGAAAAAAATCATCTTTCAAGTATTTGAATGAAATATTTGCTGAATGAAGAAATGAGAGACTATAAC s rn2.chr7 60491702 1161 + 139049774 ATAAATTTAAGTTTTA------------ACACACGAAGAAAAAAGGTGCTCAGGGGAATAAAG---ATGTTAAAATTGGGAAACTGAAACTACAATCATAATAATTAGGTCAGGAATGGAGATATCAGCCAGTACACTGACTAATTAGTAAAT-ATGAGTGTACGCTAACCAAGAGATTTTAATCAGCTCTGATATCTGTCCAGC--------GATAATAAGATCAATAAAACA-GGTACGA------------------CTCAACAAAAATGgagaggccaga-cacagtcagcacggattttaggacctctgctgataaactacgtgatatttggcaatttataaccttcctagacctcaatttt-tcttagtttatcggggcatcttatgtcccaggatcattgtgatgattaaattagatcatgTTGGAAGTATTATTTT--ATATGATAAGTCTCGGTATAATATAAATTTATTACCATTACCAATATGCAGC-AAAAGAAGCAAACAGCCTCAGAAATAATGAGCAATAAATTTGATTATGTGTGTGGTTTATTTGATCACAGAATGCTATTAAGGCTCATTAACTTAACTCCACATGTA-CATCTTAAAC--ATTT----------TTAGCTGGAATTTTTATAAGTACTCGCTAAAAAGCAAAACATAATTTAACATGATGGTTAATAAATCACCCTCTTTCCTTCAGGTACACCCAATCATAAATGTGAAGTGCTGGTCTTTTCACAGCCTGAAAGAGCCTT--TAAAAAATAATAAGACTCATCTGTTCTTTTC-CAGTATGGGAGCCTTCAAGAATCATGTCCTTCTAAATTTCCTGGAATGCCAGAGTGTAAG----------------TAGAAAATATGAA--TTTTTTTTGTCTGAAAACTCTCAGATAGGACCTCTC-ACAAGTCCCAGGTG-----------------TCATAAGAGAAAT-GCAAATCACAAACACAAACACCTCTGCTTTAAGGACCAGATATATGTTACAA-AAGGTGGG--CTGGAACTAATCCTTCCAGTTAATCTTTACGTGCAACTTTGCTTAATTCTTCGACAAGTGCGTAAGTGCATGGGACACATTTGGATGAGATCTGCCCCTCCCCCAACTCCTACTTTTATGTGATGATCCCGAAAAAAGCTTAGGGACTGCCTTT--TT-GGAAAAAAAATCATCCCTCAAATATCTGAATGAAACTTTTGCTAAATGAAGAAATGAGAGAATATCAC a score=2911.000000 s hg15.chr12_random 307503 124 + 590431 TACTCATGGAATACTGGAAATTAAAATCCTCACTTAGCAGCTCATTTTTTTCCTGATTATATTTCCCCAATTTTCAAATCT-TCATTTGTCA-CCATTTACTCTATTTACTGTTCAACCTTTGATC s mm3.chr10 7684331 122 - 130738012 TACTCACGCTATGCTGGAGAGTCAAACCCTCACTGAGCATTTTATTTATTCTC----ACTGTCTCCAACATTCCTGGATGTCCCCTTTGCCAGCCGTTGCCTTCAGCTCCTTCTCAGCCTTTGACC a score=57295.000000 s hg15.chr12_random 307627 623 + 590431 -ATAATGT---TGTTATATCAAATTCATTATTAC-TTTGCCCCCACTAGTGTCATTTTATTATTACAAATAAGCCTTATGATAAGTAAGCTTAATGTGAAAATTGTTA--ATAGATTAATAAAATGGAGAAATAAATGATTCTGCA-TAACCCAAGGCCTACACTTTGCTATCACAATTTAGTTACTGCATAGC-AAATGACAGCACGACCAGCAGTGTGTATTTCAGCTGAG--TACTGCA--TATATAGGACATAGATAGACCAAAGGAGAGGAATATGTCAT--CCAAAGATTAAACAATTTAGACAAAATATCTGTAGACAGAGCCACACTAAGAGGCAGACTACCCATGCA-GCTGTTCATGTTG---CTAAGCTATCAGTTGAAATATAATAAGATGGAGAAAATTATATTAAACAATGTCCTCTTAAGGAGGAGATATATGAAAGAATACTTTGATAAGTCTCATTAGGTGGAGTACAA----CCTCCAGTGGATATGTCAAAGTCACAAAGGTAATATGTCTTCTAGGGAGGTGGGTATGGATTTACTGAATGAGCCATACATCCTGGCAAGCTGCC-CCAG--AACCCCTTCTCCACCCTCCATGGCACTCCTCTAAA---TGAACATTGAATAAAGAAATAA s mm3.chr10 7684453 601 - 130738012 TGTGAAGTCTCTGCTGTATT-ATTTCATTATTGCTTTTGTTCCCGTTAACCTAATGCCATTGTT----ATAAGCCTTGGTCTGAGTAAATTAAGTATGCAAGTTAC----ACAGAGTTAATAAACAGAAGAGTAACTGGTTTTGTG-CAGCCTATGGCCTAAATGTTACTATGCC---TGAGCTGTTATATAGG-AAATGTCAGTA----------TTTACGTCCAAGGTGGGAATACTGCA--CACACTGGGCATACACAAGCC-AATGAGAACGATGTGTTACTGCAAACAA----------GAGACAAGAGATCAGCAGGTGGAGCAA-ATTAGAAGACAGACAAGGCATGCATGCTACTCATGCTACCAATAGACTGTTGGTAGAAACAGTACAAGATGGAGAATGTTGCCTTTA--CACTTTTTCTCAAGGA-GAGGCGTATGAAAGAATGCTTGGATAAGTTTTACGGCAGGAGACTCAGG---CCCCCCAGGGAATTGTCTGAGTTGCTATGGTAATATGCCTTTTAAGGAGATAGCTGTGGACTCACTGGGTAAGCCAC------CAGTAAATTGCTAACAG-TATCCAGGTTTCCCTGCTCTGTGACAATCCTCCAAACCCTGAATAAAGAAAAACGAGACAC s rn2.chr7 60492868 601 + 139049774 TGTGATATCACTGTTATATC-GTTTCATTATTGCTTTTGTTCCTGCTCATTTAAAGGCATTGTT----ATAAGCCTTGGTCTGAGTAAACAAGATACGCAAGTTATTTAGGCAGAGTTAATACACAGAAAAGTAAATGGTTTTTTAACTGCCTATGGCCTAAATGTTACTGTGAC---TGAATTGTTACGAAGGGAAATGACAGTA----------TTTACATCCAAGGTGGGGATACTACAGTCACACTGGGCAAACACAGGCC-AATGAGAACAATGTGTTATTGCCAATGA----------TAGACAAAAGGTCAGCAGGCAGAGCCT-ACTAAGAGACAGACAAGACAGGCA-----------------ATAG-CTGTTGGTAGAAACAGAAGGAGATGGAGAATGCTGCATTTA--CACTTATTCTCAAGGA-GAGGCATACGAAAGCAGGCTAGGGTAAGTTTTATGGCAGGAAGCTCACCACCCTCCCCCCGGATATGTCTGAGTTGCTATAGTAATATGCCTTCTAAGGAAATAGATGTGGACTCACTGGGTGAGCCATACACGAtggcaaagtgctaacaggtatccgggagtccctgctccatggcaatcctccaaaccctgaataaagaaacgtgagacac a score=27751.000000 s hg15.chr12_random 309580 376 + 590431 TTGTTACAAACTTTACACAGCTCCATATTCCCTTGTAT------AACAAATGGTCATATCTATACTTATTAGTTAAAAACATGAAACTCCTCCACATTATCCCTACTAACCTGGCAGTAAA-----------------CTCCTGCAACCAAAAACTGAAGTGATTTTCAATTAGCCA--------------------------------TGTGCTAA---------------------------------------------------------------------------------TAA-------------------GAGCCAAATctgag---------------------cattcttt-tccagctctgtgtacagtgatgtcacatcagtagcttgaatcagccatggtaggagtatttacaccataggaactggcaaacactataaat-tac---agttttatatccttctagagtgctggttatcaaaccttttaccatcacattactACTCTAAGCATCCTTTTCATCAGTGCTTTAAAAAGCAGAAT s mm3.chr10 7685825 495 - 130738012 --------TATTTTACACAATTCCACACCCTTCTGAATGTGAAAGACCAGTGATCACACA-GCACTCATCAGCTGACAACA-GAAGTTAC--------AACACTCATCAGCTGACAACAGGAAACACCATCATGGAGTTTCTAGTAACAGAGAATTGAAGTTGCTTCCAACCAACCAGCTGTAGAAGACTGCCTCATGCT-----GGCCTGTGCTGGCCCCTGCTGGCTCATACTGGCCCCTGCCTGCCCCtgctggctcttgctggctcttgctggc--------------------tcttgctggctc----------ttgctggctcttgGGAGTATATTTAACATTTAGTTCATTCCTT-CCCAACTC--TGTACAGTTCTAGAAGGCCAGTCATTTCCATTAACTATGGCCGGAGGGTTCACATTATAGAAACTGACACACAATACAACTGTGTTCTGATTCTGGCCTGTTTTAGAGAGCTGGTGGCTGAGCCTCTC-CCAGCACACACCTACTCTAAATTATCTTTTCATCCATAT-----GGAGAATGAT s rn2.chr7 60494549 497 + 139049774 --------AACTTTACACAGTTCCACATCCTTCCGAATGTGAAAGACCAGTGATCACACG---------------------------------------ACACTCCTCGGTTGGCAACAGGAAATAC-ACCACAGAGTCTCCAGCAACAGAGAACTGAAGTTGCTTCCAACCAACCAGCTGTGGGTGACTGGCTCATGCCATGAAGGCCTatgctggcccatgctagttcatgctggcccacgctggctcatgctggctcatgctgactcatgctggcccacactggctcatgctgcttcatgctggctcatCCTAGCTGTTGCTGGCTCTTGG-AGTATATTTAATATTTAGCTCGTTTTTTTCCCAACTC--TGGACAATCCTGAAAGACCAGTCATTTCCattaactatggttggagggttcacattacagaaactgacacataatacaactctga---gtttctggcctgttttagagagctggtggctcagcctctc-ccagcacacACCTACTCCAAATAATCTTTTCATCCATGT-----GAGAAATGGT a score=27018.000000 s hg15.chr12_random 309956 226 + 590431 TGAATCCCTTCCCATCGCTCAGTCTCGAAGAGTTCTCCAGGATTTCCAAAATGCCAACATTTCCCACTCTGAAAGTTTACTCTCTCCAAGGTAACAGACCTTAACAGCATCCTTAGTGTTGCTAAATTATACCAGAGGAAAAAAATTCTTTTTTGCTAGATCAGCTTTTGGTGTTGCTGTAATATTTTAGCTCTGTGCTTCCTGACAGCTAGGAGTCTAATTACCA s mm3.chr10 7686747 185 - 130738012 aAAGACCCTTTCCA-------------------TCTCCAAAATTCCCTAGCTGCCAAAAGTGTCAAATCCAAAAGTTCACTGTCTCCAAGGAAATGTACCTTAACAGCATCTGTGCTGTGGCTAAATAA---------------------CTTTCCTAAACCAGCAATTACTATTGCTCTATGATTTCATCCCCATGCTTTCTGACAGCTGGGT-TCTAATTACCA s rn2.chr7 60495479 186 + 139049774 aAAGACCCTACCCA-------------------CCTCCAAAATTTCCAAACTGCCGAAACTGTCAAATCCAAAAGTTCACTATCTCCAAGGAAATGCAGTTTAACAGCATCTGTGCTGTGGTTAAATTA---------------------CTTTCCTAAACCAGCTATTGCTGATGCCCTATGATTTCAGTCCCATGCTTTCTGACAGCTAGGTGCCTAATTACCA a score=679.000000 s hg15.chr12_random 310864 20 + 590431 ttctaaaatgggccagatag s mm3.chr10 7688515 20 - 130738012 TTCCCACAGggaccaaatat a score=20616.000000 s hg15.chr12_random 310884 195 + 590431 taaatattttacactttgtagtccatatggtctctgttgcaact----actaagtctgcctttgtagtatgaaagcactaatagacaatacataaactaataaacatgttatatttccataaaactttaattgcaaaaggcaggcagt-----aggccataagtggcccatagccatag------------------ttttc---ca--ctccAACTCCAAT-------------TTCAA s mm3.chr10 7688535 232 - 130738012 taaatatttgaggctctgcattt------gtgtttgtgggcacttatttctcagtttgcccttgtaatatagaagtaatgatgaacaat-catgagcaaataattatgttacattccaataaaactttacatacaaaa-acgggTAATGCTTGAAGACTCAGGTGGCAAACAGACATAGGAGTCAAGCTATTTCTTCCTTTCTTCCATATTCCTCCCCTAGTACTGAGGACTGTGCTCAA s rn2.chr7 60497386 227 + 139049774 taagtattttaggctctatgttt------gtgtt-gtgggcacttaggtctcagtttgcccttgtaatacagaagtaatactgagcaat-catgagcaaataatcatgttacatcccaataaagctttacatacagaa-acagAGAATGCTCGAAGATCCATGTGGCAGA-AGACATAGATGAGAAGCTATTGCTTCCTTTC---CATCCTCCTCCCCTAGCACTGAGGATTGTGCTCAA a score=29990.000000 s hg15.chr12_random 311478 293 + 590431 ATTGCACTCAGCCAACCCTCTTCTCTTTGTGCTCTAAGCAATTAGTAATTAGACACttttatatattaatattttattttGAAACAATCCTCTGCTTGCTCACCTTCACTCTGTTTTCCTAGCACCTGGCAATCAATAAGAAGCAGGTAAGTCCCCAGTATACGCAATTGACACCATTGATTCCATTAGAATGATGAAAGCTGCTCTACCTAAATTCTAATTATTCTAGAACTTCAGGGTCTGAGCCGCAGCATAAA--TGCAAAAGTAGAATCTAAGAGATTCTTAGATTTGTG s mm3.chr10 7689507 276 - 130738012 ATCTCCTT-----ATGTCTGTTCTCATTATCTCATAA-----TGACAGTTAGACA-TTTCACTCATGAACATTTTGTTCTAA---AGTTCTCTGTTCAGTTACCTGTACTTTGCCCTCCTATCATCTGGCAGTTTGTAAGTACTAAATAGGTTCCTCATGTAGAAAACTGGTTCTCTTCATCCCAGCAAAGTGGTTAAAGCTACTCTACCTAAATTCTAATTGTTCTCTAACGTTGAGGTATAACCCAGGATATAAG--TACAGAAGTAGGATTTAGGAAAATCT---ATTTAAG s rn2.chr7 60498421 274 + 139049774 ATCCTGCT-----ATCTCGTTATGCATGTTCTCATAA-----CGATGGTTAGACA-TTTCACTCATAAATATTTTGTTCTAA---CATT-TCTGTCCAGTTACCTGTACCTTCCCCTCCTATCATCTGGCAATG-GTAAGCACTGAAGAGGTCCCTCGTGTAGGAAACTGGTTCTCTTCATCCCTGTAAAGTGATCAAAGCTGCTCTACCTAAATTGTAGTTGTTCTATAACATTGAGGTCTGACCCGGGACATAAAAATACAGAAGGAGGATTTAGGAAACTCT---AT--AGG a score=155309.000000 s hg15.chr12_random 311771 1575 + 590431 GAGAT-------ATTAGCCACAAACGAAGACTGTATCCAAGCACCGATATTTATTGTTTGCTAAATAAAG-AGTGCAAGTTTAAAATCAGTAAGATCATTTCTTTAA-AAGTTATTTAGTTAT----TTATTTGAATCTTTACTGA-----GAAGTCAGTTCATTCTGACCTTTTCATAAATTAAATTAAACTAGCACTGGC-----TAAAAGGTGA--------TGGGAAGAAAAGGTGAAAAGGTTAGTGGGTCGTTGTCGTTTTTATTGCACAGAAATTTCTGAATGGAGC-TTCAGCCAAAATATTGCAAAGATTCAAAATTTAATTTC---CTGGGACCAGCAAACCAATTTTTGATGGTACCATAAAGACTTCC-AAAATGAGAGTTAATTTAATTCATTGTCATCCAAATCAAAATTGTGAAAGTATA--TAAAAAAGCAATCAGTACATTTTCTCCAAGTAATAATTTTCCTTTCTCCAAGTTTCATGTATATTGCTACAACCCAGAGTAATATTTTCTCAGTAGTATATTTTTACTTGTTTTGTTAGCATAAGATGCTGCTCTAAATACATATATTTAATATTCTGGTATGTTTTTAAAAATAGTCTTATTTCCTTTCATTGAGACTTTGAAAGAGCACCTTTATGCATATAAAAAAAGAAAAGA-CCCTAAATACAAAAACTAACATAGAGAGTATGTAAAATTGTTATATGAATATAATAAAT-GCTGCTTT-----AACTTTGAAATAACACCAACCATTAACAAATTGAAAATTTTGTAACTTAAGCTATTTAATGTAATTCTGTTTGAAATACGTATTGTTTACTAAAAACTTATTTTAGCCAAAAATAACACAAAGCTTCTAGACTGCCAACAAAATGTGTTTTAATAACCCAATTCATTAGAAAAATGTTGAAGAGGACTCTCTACCCCTTTTCGCTCCTTTACAAGTTGAGGAGCTGCATGACATAGtggaatgaaattccctaatttgaaacctggttctattgcttagcagctgaatgactgggcaagtt---atttaacctggctctgagtttcataaactggaaatagtattagaacctatctcacaggcttgatgtgccacttacatgagataatatttataatccactataaacagagcttaatacatagaaaatgttgaataaatgtcagccattaGTAATATGTTCATTTTTCTTGGTTGAATGTGATTTTATTATTTAGTACAATTTGATCTCATAAATAACAGAGACTACAGGCTATAGCTACATAA-AAAGGAGAATTGGGGTCAAGTAGTTCAGACAGGAGAAACACACTAGAGCTCAACTCAGCATACATGATACAGCTGTGTACTTCCAGTGACTAACAGTGGATGCTGTTGCAGGCAGGATACCAAAGCAATGTTTTGTGTCAGCAGCATTAAGCAGATCAGAAATCAAAAAAATTA---CATACAGTAACAGATTCTATGGTTAGCAACTGTAACTTAAATACAGAAAGCCTGTCTATGTGTGTACAAATTCAAATATGGACGTGATGCTGAAAAGTTTTTAGTTAGTCTTT------TCAGCCCTTTTCACCATTAATGTCCTAGATTCAATGTAAAGA s mm3.chr10 7690519 1458 - 130738012 GTGATCTTTATTATTAGTCAAAAATAATTACTCTACCTAGGCAATGTCATTTACTGTTTACCAAGAGGGG-TGTAAAGATTCAAAACCAG-----TTGTTTCTTTACTGTGTTATTTGGGGACACTAGTGCCTG-ACCTTCACTGACAATGGAAAACACTTCGTTGTGACATTTTAA-AAACCAAGTTGAACTAGCACTGGCTCATTTAAGGAGTGAAA------TGGGGAGAAAGAGTTAAAAGCACAGAG-------TTCCCTTTCACTGTGTAGAGAATTCTGAACTGAGCAATAAAATAAGTCATTACAAAGATTCAAAATTGAAATGCTAGCTAGGACCAGTGAGCCAATGACTGAGGACATTATAAAGACTTGTGAAAAGGAAAGTTAATTTCACTCATAGTCATCAAAATCAGAATCATGGAAGCATATTTAAAAAAGCAATCAGTGTAGTCTCCCCAGTTGTTGATTTTCTCTTCTCCAGGCTTCATGGCTATAACTGTCATCAATAAC--CACTTTCTGGTTAG-------TTA-----TTGGTCAG-ATACAATGCTGC-CCGCACGTATGTGTCTAA---TCAGGGAAGCTGTCAAAAATAGTCCTTGTTACC----TTGTGACTTTAATAGATTACCTCTACACATCTGAAAACTGAAAAGACCCCTGGACAGAGAAGCAAACATACAGAATACATAAGCTTGCTATATAAATATAGTAAATCGATATTTTACT--AGCTTCTGATGAAGTCAGTTCATAAACAAAATGCAAATCTTGTATAGTTGGCTACATAAAGCCACCCAATCCAGAATA-------TTTACCACAGAA-TATTTTAGTATAAAATAAAGCAAAGTGTCAACAATGCCAGCAGGATGCCTGTCAAAGACTCAGTTTGCTAGAAAACAACTCAGGGTGAATCCTTACAGC-TTTCTTTCTTTTGAAAGCTTGGAAGTTGCAGACCACAAtggagtgagattccctagttcaaatcccggttctatcacctagaaaccccttgacctCACACTCA---GTTCGAATT--CACTAAG--CCATAAAACTGAAATAACCTCAGAGCTGAT------GGATGAGTGAGAGATACACATGGGATGATATTGGTGACCAATTAAAACTTGCTCTTGCCGCACAGAAAATGT------------------------TATGCTCAGATTAACTGTTAGTATGTG----------------------------TTGGGAGACACACAAGACA--CCATAGCTATGCAA-AAA--AGAACAAGGGTCAGGTAGTTAGGACAACAGGAAAAACATAGACCTCAACCCAGTACCAATGATACAGCTGTGTGTGTACAATGAATAATATTAACTGATGCTG-GGG---------------------------ACCATCATCAAGGCCACCAGAAATCCAAAGAACAAAAGCACCCAGGAGTAAAATCTACAG-------------TTCAAGTA-ATGAATCTGTTCTGCTTATGAACTAATTAAAGCATGGGCCTGATACTGAACAGT-----ATTAGAGTTTACTGGATCAAACC--TTCATCAGTAGACCCATA-AATTCATATAAAGA s rn2.chr7 60499462 1459 + 139049774 TTGATCTTCATCATTAGTCAAAAATAATTAC-----CTAGGTAATGGCATTTATTGTTTACCAAGGGGGGATGTAAAGATTCAAAATCAG-----CTGTTTCTTTTCCACATTATTTGGGGGTAATAGTGTCTG-ACCTTCACTGACAATGGAAAACACTTCATTCTGACATTTTAA-AAGCCAAGTTGAACTAGCATTGGCTCATTTAAGCAGTGAAAAGTGAATGGGGAGAAAGAGTTAAAAGTGCAGAC-------TTCCCTTTCACTGTTTAGAAAATTCAGAACTGAGCAGTAAAATAAGACATTACAAAGATTCAAAATTGAAATGTTAGGTAGCACCAGTAAGCCAATGACTGAGGACATTATAAGGACTTCTGAAGATAAAAGTTAATTTCATTCATGATCATCAAAATCAGAATCATGTAAACATATTTAAAAAAGCAATCAGTGTGGTCTCCCCAATTGTTGATTTTCTTTCTCCAATTTTTCAAAGCTCTACCTGTCATAAATAAT--CACTCTCTGGGTAG-------TTA-----TTGGTCAGCATACAATGCTGC-CTGAACATACATGTCTAA---TCAGGGAAGCTGTCAATGATAGTCCTAGTTACC----TTGTGACTTTGACAGACTACCTCTACATATCTGAAAGCTGGAAAGAACTCTGGACAGAGAAACAAACATAGAGAATACATAAGGCTGTTATATAAATATAGTAAATCAATATTTCGATGAAGCTTCTGATGAAGTCAATTCATAAATAAAATACAAATTTTGTTTCTCAGACTACTTAAAGCCACACAATCCAAAATA-------TTTACCACAGAA-CATTTTAGTGTAAAATAAAGCAAAGTGTCTACAGTGCCAACAGAATGCTTGTCAAACACTCAGTTTGCTAGAAAACAACTCAGGGTGAATTTTTACAAT-TTTCTTTCTTTTGA--------AAGTTGCagaacacaatggagtgagattctcccattcaaatctcggctctatcacttaGAAACCCCTTGGCCTCACTCTCACAGGTTGGAATT--CACTAAG--CCAT-AAATGGAAATAACGTCAGAGCTGAT------TGATGAATTTGAGATACACATGGGATGACATTGGTG----ATTAAAACTACCTCTTGCCACACAAAAAATGT------------------------TCTTCTCAGGTTAACTGTTAGTATGGG------------------------TCCCTTAGGAGACAAACAAAACA--TCATCGCCATGCAAGAAA--AGAACAAGGGTTAGGAAGTTAAGACAACAGGAAAAGCACAGACCTCAACCCAGTACGAGTGATACCTCTGTGTGC-CACAGTGAGTAACAGCAGCTGGTGCTGAGGG---------------------------ACCATCACCAAGGCCACCAGAAACCCAAAGAGCAAAAGTACACAGGAGCGAAATCCACAG-------------CTTAAGTA-ACGAATCTGTTCTACTTATGAACTAACCAAAGCATGAGCACGATACTGAACAGT-----GTTACACTTTACTGCATCACACC--TTCATCGGTAACACCACATATTTCATGTAAAGA a score=22428.000000 s hg15.chr12_random 319072 190 + 590431 tctTGCCTTGCTTTCTTGCACAATGGATTTTTACCATTTTACTCCTTCACTGAGGATACAGGCTTTTAGTCTCTAAAATGACCCACT-TTGGGTGGGCTTTAGACTTTGTCTCCTGTCCTCTGCCCTCAGCAGCCAAGAAATACAAGCTTCTACAGGCAGACAGATCTAGGAA--TGTTGCAAATAATAAATA s mm3.chr10 7693135 191 - 130738012 TCTTGCCTTGCCTCTCCACACAATGGAGTTTTGATACTTTA-TTATTCTCTGAGGATATGGCTCTCTGGTCTTAAACTCTGTCTACCCTTGGGTAGGATGTGAACTTCAATTTCTACCCTCTTCCCTGAACAGCTCTCACAGAAGTCATT-TACAAGCAGAGAGCTCTGGATATCTCTGGTAAATAACAAACC s rn2.chr7 60503839 189 + 139049774 CCTTGCCTTGCCTTTCCACACAACGGAGTTTTGTCGATTTA-TTATCCTCTGAGTATATGGCTCCCTGGTCTTGAAAACTGTCTACC--TCAGCAGGATGTGAACCTTGATTTCTGCCCTCTTCCCTAAACAGCTATCACAAACATTCTT-TACAAGCAGATAGCTCTAGATAGCTCTGGTAAATAACACATA a score=37720.000000 s hg15.chr12_random 320549 404 + 590431 TATGCTACCATCGGGTAATGAAAGAGGAGTCACAAGATGAGAAAAAGAAAAATATGCTACATTTTTAGTATAATCTCCTAATATAATTTAATGAGATTGTCACTAGGAGGTTACTCATTTTATGAGGTGCAAGAATTAATTTTGGAAAGTAGAGGCACCACATGAATAAGTTAAACAATACTATGCCTAAGGAAAA-CTAAGAAAACATCatttattcattcattgaat---attt--attgaacatctacaatgtatcagatcagactatttttttacttttgaagacatattagtg-gataaaggtgacaaaaatccttgcctactgggaacctacattctag--------------------------tAAGCATGAGAGTACTGAGCTATTTATTGTAAGAGCGGAGAAGACTCAGCACCAAGAGGCCCAGGG s mm3.chr10 7693326 393 - 130738012 TATCCTA-CATGGGGTGGTAGAAAAGTAGTTTT-ATCTGTGGGAGAG--TGACATACTACTTCTTTAAT-TGGTCCACTAATACAACTTACACAAGTTATTACTTGGGAGCTACTCATCTTATGAGGTACAGGAACTAGTTTTATAAAATAGGAGCATC-------TAAGTT-------------TCAAAGAAGAA---AAGAAAGCATCAGTCAGCcattaatttaactcaatttctactaagtgcctaaaatattccaaatcaggcaattttctga---------gggtgttagtgagacaggagtgaaaaa-tcccacctctgtagagaacttacatttcaatAACATGGCAGTAATGGGTTCTGCTCTAAGCATGAGAGTGTTGAGCT-----TTGTAATA-TAGGGAAGATATGGCTTCAAGAGATCTAAGG s rn2.chr7 60504028 378 + 139049774 TATCCTA-CGTGTGGTGGTAGAAGAGTAGTTAC-AGCTGTGGACAAG--TGGTGTACTACATCTTTAAC-TGGTCCACTAATACAACTTACCCAAGTTACC-CTTGGGAGCTACTCGTTTTATGAGGTA-AGGAACTGGTTCTAGGAAATAGGAGCATC-------TAAGTT-------------TCAAAGAAAAAAATAAGAAAGCATCAGTCAGCCATTAATTTAATTCAATTC---CTAAGTGCCTAAAAAATTCTAAGTCAGGCAATATTTTGA-----------GTGTTAGTGAGACAGAAGAGGCAAA--CCCTCCT----------CTTATATTCTGGGAACATGGCAGTGCTGGGTTCTCCTCTAAGCATGAGAGTGTTGAACT-----TTGTAGAA-CAGGGAAGATAAGGCTTCAAGGGGTCCAAAG a score=98568.000000 s hg15.chr12_random 322224 1009 + 590431 TGGCTATTTGTAGA-AGGTAAAATTGGTTATAATCTCTTACTATTAAATATTTCCTTAAAATCTTAACATGAAATAGTA---GTCTAATTCCTGATGCTAATCTAAACTAATAACCATAATAATTGGGCTATATATCTATCTACTCAGAGTTATGAATAAATCCAGGAGCCATTTCCTACCATCAAATTCTTATTCATTTATCTGTTAAAGTTTACCTGAAGAAACAGAAATATGTATTCTATATATAGTTTGGGTTAACCTTTATTCAAC------ACTCCTGGGAACTTTCTATTGCAATGGAATCCATTTAGTATGCAGCCTTAGAAA--AGGCACCTTTGATAGAAAGGCAGATACAGAGACACCAAAGTGTTCATCTTAATGATTAACCAAATTATATTTTGCTGTCTTTCCATTTGCACGATGAATGCTATTCACATAGAAAATTCTGTGTTATCCAAATGAACACCAGGTGGTTTGATGTATCAACTGTTATGGTTAATAGAGACATACAACATACAAATTTCCTATAATCAAAAACCTTTAAGAGCAAAGCTTAATCATTGTTCATGATATAGATATTTCTAAAAATGAATCAAAATATAAAGAAAGCCAATGGTTTTTGCTATGTAAGGGTGGCTGGacacacacacacacacacacacacacacatgcatacacacacacaAAATAGATTGGATAATCCTAATATTTAAGATTAAGAAAAGGAAAGCAACTTGTAGAAAaacaatgagagctattatttgttgttcacttacattgtttcttagacaatggtaggtgcttaatatatattaatacattgcttacgagagctgtgtaatttatgtgtcatgatcattttagagatgagaaaactgaggctcagggggaaatttctaagct--------gat----------------------------------------ttaaggttaagtaactaacaaatgatagcgctggaat-tttacatctgaatctgAGTTCA------------TTTTTTAAATGCACTAAAAACTTTACCCAACAATTGTAAACACTATTATT s mm3.chr10 7698248 981 - 130738012 TAGCTCTTGGTAGAGAGGCAAAGCCAGTTATAACCTCTTACTGTTAAAAACCTTTTCCTAGTCTTTATGATAAAAAAAA---TTGTAATTCCTGGTGCTAATACAAACCAATGATTATTGAAATTGGTTATTTTACATATCTACTTTGTGCTATAAATAAGTTCAGGAGCCATACCTTACTATCCAATTCTTGTACACTTAACTGCTGAAGTTTGCCCAAGAAAACGGAAGTCTGAGTTCCATTTACAGCTTGAGTTAA--TTTAGTCAGC------ACCCCTGGGAACTTTCTATAGCAATGACACACACTCCGTGTGCAGCATTGGAAAGCAGG---CTTTGGCAGAGAGGCAGCTGCAGAAACACAGGGGTGTGCATCGTTACAAGGAACTAAATC--------CTGTTTGTCTGTTTGCTCAGTCAGTGCTATTTACACAGTGAATTAT-TATTATACAGACAAACATCAGTGATTCTGACCCATCACATGCCATGGTTGATAAAAATGTACAATGTGGAGAGTTCCTATAATCAG--------AAGAGCAAAATCCGGGCGTTGGTGGTTGCATGG----TCTGAGAAATTAATATAACTATAAAGGGGGCCAGTTGTT----CTGTGGAA-AGTATCTAG--------------------------------AGACTCACACACAGAACACATTGGGTGAT-TTAACATTTATGAAC-AGGAAGGAAAAGTACCTTCCAG-AAAATGATAAGAGCTATCAT------TGCTATCACGTTGATCCTGAGACAGCA--------CCAACATTAACCAACATGCATGTTACAATAGCTGCATAG-TTGTGTGGCATCGCCATTTTAGAG--------ACTGAGGCTCAAAAGCAAGGTTTTTGGTTTGGTTTGGGGtgttgttactgttgttgttgttgttgttgttgttgttgttgttAAGATTGAGTAACTAACTGACAATG--ACTAGAGG-TTTCAGTCTGGATGTGGGTTCAGGAGTCATGTTCTTTTCCAAGTTTACTAAGCAGCTTACCTAACACTTGAGAACATTATTCTT s rn2.chr7 60507500 946 + 139049774 TAGCTGTTGGTAGAGCGGCAAAGCCAGTTACGACCTCTTACTGTTGGAAACCTTTTCCTAGTCTTTATGTTAAAAAAAAATCTTGTAATTCCCGGTACTAATATGAACCAATGATTATTGAAATTGGTTGTTTTACGTATCAACCTTGTGCT----ATAAGATCGGGAGCCATGCCTTACTGTCCAATTCTTATTCATTTGGCTGCTGAAGTCTGCCCAAGAAAATGGAAGTCTGAGTTCCATCTACCATCGGAGTTAA--TTTAGTCAGCCCCCCGCCCCCCAGGAACGTCCTACGGCCATGGCACACACTGGGTGTGCAGCATCAGGGGGCAGG---CTTTGGCAG-GGGGCAGCTGCAGCAGGACAGGGGCACGCGCAGTCA-GATGAACTGGATC--------CTGCCTTTCCATTTGCTCAGCCAGTGCTATTCACACTGTGAATTAT-TATTATGCAGATAAATACTGGTTATTTTGGCACATCACATTCTGTGGTTAATAAAAATGTGCAACGTGTGTA------ACAATCAG-AATGTATAAGAGTGAAATT----CGTTGTTGGTGACATGG----TCTGAGGAATTAATCTAATTATTAAGGGAGCCAGTTGTT----TGGTGGAA-AGTGTCTAG--------------------------------AGGCTCATACACAGAACACATTGGGTGAT-GTAAC-------------GAAAGAGAAGTATCTTCCAG-ACATTGATGAGAGCTATCGT------CGCTATCATATTGATCCTGAGACAGCA--------CCAACATTAAATAGCATGCTTGTTACAGAAGCTGCATGA-CCATGTGACCT-GCCATTTTAGAG--------ACTGGGGCTCAAAGGCAAGGCTTTTGGTTT-------GGTGttgt--------ttgtttgtttgtttgtttgtttgtttgttAAGATCGAGTAACC--------ATG--TCTAGAGGTTTTCAATCCGGATGTAGATTCAGGAGTCAGGTTCTTTTCCGAGTTTACTAAACATCTTACCTAACACTTGAGAACATTATTCTT a score=170.000000 s hg15.chr12_random 323233 15 + 590431 TTTTACATGATGAAG s mm3.chr10 7699229 15 - 130738012 GTttttttaattagg a score=123454.000000 s hg15.chr12_random 323539 1183 + 590431 ACTCAAATCTGTTGGACTTCGGTTTTCAAATTTCCTCCAGAACCATACCACTTGGTGGATTCAACAGAAAGAATGCAAAATCTTAAGCTAGTTATCCACATAAAA--ATGTTTCTGTTCAATATCATTAAATGTTTCATTTTCTT--CATATGTAATTT---TTAAG---------TAACTTATATGACTGAATTGCATTCCCTCATAAGTGCTATTAAGGTACACTTTAGTTCACTATGTATTAATCCATCTGCAAACCTGTCACAAATTGTGGTCAGTAATAGCTTCCAAATGAGCATGGTTTTCATATAATCCTC-AGAACTTCCAATACCTATTACTGTAGGAATACCACTAACAATCTTCACAGTAAGTCTTCTATTGAATTTGTACCATTTTATAAACTAGAGGTTCAGTTTCCATTGTCTATGTTTC-TCTAAGGCATCAATATTAA--TTTTACTATTTTAACTGACAATATGAAGTCTTGTGCATATACTATTGAATGCTACATATAATATTACTTTAGATAGCTGTTGTTGCTATATTTTAACACTATGCTCCCTCAAGATTAAAA-TCACACAGCCTTGTTTTTCCTCCAAGGAATTTAGTTCCAAAAACCAGTCATAGTACAAGCATTTTCTGCAAGCTATTTTCATATTGAGTATAAGCTTTGCATGAAATCAGAAAGTATTACACAACTTATGTGTTTTACTAA----GAAAAAGCTCGTTAAGGTGATACACCTCACTTCCAGGAAAAAACCTGAGCACAGAACATCAGTCCAAACGTCAACAATATTAATATGAGTAGTAAACAGGAAAAGGAATTTCCAAATTACAAAAATCAAATATTCAGCAACCTATTGCAGACTAGGATTCTGTGAATAAACAATGAC---GGATTATAGCAGAGAG-----CCTCTTGGC------TCTCATTTTCCTGCCTTGTCTTACCAATGAAAATACCAAAACAATGTTGAAAAAATGTGCACTTGAAAACTCCAAATCAT--------------AATCAGTATTGAAACTAAAATATGTGTGACAGTATCTGGGCACAGGCCCAGAGTCCCATATATTATAAGCTTCTTTATATTTATTCTTAGCATGTGTTCATATCATAAAAAG-------CATCAAGTGTGGTCAATTTTTAAAATCATATGGTTTCACTAGCCAAGAAGAACTGTGTATGCTGATAAAAATTCtg--tgtgtgtgtgtgtgtt s mm3.chr10 7700590 1154 - 130738012 ACTCAAAACTATAGTGGTTT--TTTTTAATTTGGCTTCAAA--------------TTAATTTAACAGTGGCTATACAAA--------ATAATTAATTAAATGCAACTATGTTTCtatttaataatattaaatattaCATTTGTGT--CACATACAATATAACTTTAGAATAAAAAATTACTTATATGACTAAATTGTATTTC----TAATAACTAATAAAGTACAGACAGGTTCATTTGATATTAACCAATCCATAA------CA-AAATAATGGCCAATTCCATCTTTCAAATGAATGTGACTTCCCTCTAATTCACAAAAACTTCCAGGAACTTTTATTGTAGAAATACTACACAGAACTTCA----------CTCTAGTGATTTTAGA---------------GAGATCCAATTTCCGTT-TGTCTGTTTTTGCTAAATCATTAATATTAATTTTTTACTATTTTGCATAACAGTATGAAGTTTTGTGCATGCATAAGTAAATGCCATAGCTAA-------------------TGTCGCTGTGCTTTACAACTCTGCTCCCTTAAGATCAAAATTCATACTGCCTTCTTTTCCCCCCAAGGACCTCGGCTCCAAAACTCAGTCCCAGTGCAAGCACTGTCTGCACGCTGTTTTCATAATGAGTGCAAGCTTAGCATTAAATCAGAGTACAAGATACAACTTGTGTATTTTTTTTTCTTTAAAAGAAGTCTTAACGATGAAACACCTCAAAATCAGGAAGAATCC-AAGCATCAAAGAGCCGTCAAAGTATCAGCAACATTTCTGTGAGGGATAAAAAGCAGTAAGGATTTCCAGATTTTAAAAGTTAAGTATTTAGTCACCTGCTATAAGCCAAAGCTTGGTACAGAATCACTGGCTCGGTCTCTCCACTAAGGCCAGTGATTCTGTACCAAGGGTCCCATATCCCTGTCTATTTTTACTAAGGAAAATATCAAAACAATGTTG--AAAATGTACAGCTGAGAACTCCAAATCACAACCAGCTTTGAAAGATCAGCATTGAGACTGAA--ATGCAAAACAGACTCCAGGTACA-GCCCAGAAAACAACATGGTAAAAATTTTCTGGTATCTATTCTTAGTGTGTCTCTATATCATAAGGAGGCTGGATGGACAAGCATAGTCAAATTTTAAAATCATGTAGTTTGATTAAGC---AAGAGTCCTGTGTGCTGATAAGACTTCTGATTGTCTATTTGTGTGTT s rn2.chr7 60510412 1103 + 139049774 ACTCAAAACTATAGTG--TT--TTTTTAATTTGGCTTCAAA--------------TGAATTTAGCAGTGGCTATACAAG-TCT----CTAATTATTCAAATGCAACTTTGTTTCTGTTTAATAATATTAAATATTCCATTTGTGTGTCACATGCAATATAACTTCAGAATAAAAA-TTACTTATGTGACTAAACTGTATTCC----TAATAACTAATAAAGCAAAGACTGGTTCACTAGATATTAACCCACCCACAA------CA-AAATGATGGCCAATTCCACCTTTCAAATGAGTGTGGCTTCCCTCTAATTCACAAAAACTTCCAGGAACTTTTGTTGTAGAAA--CTACGCAGAACTTCAACCCTTAGCATTCTAGTGATTTCGTACC-------AAACTAGAGATCCAATTTCCATT-TGTCTGTTTT-GCTAAATCATTAATGTTAATTTTTTACTATTTTGAATAACAG----AAGTTTCGCGCATGCATAAGTAAACGCCACATCTAA-------------------TGTTGCTATCTTTTAGCTCTCTGCTCCCTTGAGATCAAGATTCGTGCAGCCTTCTCTTTCCTCCAAGGCCCTCAGATGCGAAACTCAGTCACAGTACAGGCTCTTTCTCCAAGCTCTTTTCATAGTGAGTTCAAGCTTCACATGAAATCAGAGTACAACATGCAACTCATGCGTTTTTCTTTA---AAAAGGGCTCATCACGGCGAAGCATCTCAAAGTCCGGAAGGATCC-AAGCATCAAAGGGCAGTCA--------GCACCATCTCTGTGAGGGATAGAAAGCAGTAGAAATCTCCAAATTTCAAAGGTTAAGTCTTCAGCCACCTGCCACAGGCCGAAGCTCAGTACAGAATGGCTGGC-------CACAGTGAAGAC-----ACTCTGGGTCCCACGTCCCTCGTCCCTGTCTATTTTTACTGAGGA-------------------------TGGACAGCCGAAAACGCCAA----------GCTTTGCAAAGTCAGCATTGAGACTGAA--AGGCAAGACAGACTCGAGGTGCA-GCCCAGAAGACAATACAGTAAGG-CTTTCTGGTATTTGTT----GTGAGTCTCTATATCAGGAGGAGGCCGGATAAGCAAACATAGCCAAATTTTAAAATCATGCAGTCGGATTAGCC---AAGAGTCCTGTGTGCTGATAAAACT---GGTTGTCTATTTGTGTGTT a score=42975.000000 s hg15.chr12_random 324722 440 + 590431 gtgtgtgtgtgt-TTACTGATTAGTAGGGGTAGAACTAAAAC--TGAGTTCTGTACATA---TATTTCACCTCAAAAGTAATATTT-ACACCTGTACTCAGCCTTATCATC-----CACAAAATAATAAAAGAAAAG--TGGTTTTTACTTGCATGTCAGCTGCAGAACACACCAACAGCCTCCAGAGCCATACCACTTTATAAAAAAGCTGGTTACAATTATTAATATCAATGTAATCTTGAAAGCACCAGTGCATGTAGGAAAAGCTGTAGATAAACCCTGTCATTTCTGTGTGATTAGGAACAGTAATTTTTTCAAAGTGAAAGAATTAGTAACTGAGAATTAGTAACTGAAAAGTAAAAAACAGAATTCCCCATTCAAATAAAAGGCTGGATAACACTGTTTTT--TGCTGAAACAGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta s mm3.chr10 7701940 392 - 130738012 GTATTCAAGTGTGTTAGTTATTAACGGGGGCAGACTCGGAATTATAAGTTCTGCACGTAGGGTATTTCACCTCCAAAATAATAGTT-AAAGTCATGATCTACCTTATTACCTATCACACAAGAGGATAAAAGAAGAGATCAAGTTTTTCGTGCATACAAGTTATAGAACATATCCACTGCCACCA-ACCCAGGCCACTTTGTAACACCCCTGGCTACAATTAGTGCCAAAGATGCAATCTGGAAAGTGCCAGAACA-------------------------TCACATACCCATGTCACTTAGGACAGCAGTTTCTTCAGGAGGAAAGAATT----ACTAAGAATTAA----TGAAAAGTA------AAAATTCCTTTTTCAAACAAAGGGCTA----TCACCCCTCCCCCTCC--------CCATGGAATTGT-----------TAACCGTATGTA s rn2.chr7 60511802 393 + 139049774 GTATTCATGGGTGTTAGTTATTAACAGGGGCAGACTCAGAATTATAAGTTCTGCACATAGGGTATTTCACCTCAAAAATAATAGTTTAAAGCCATGATCTACCTTCTTATCTATCACACAAGATGATAAAAGGAGAGGTCAGGTTTTTCTTGCATACGAGTTATAGAACGTACCCACTGCCACCA-AAGCAGGCCACCTTAGAGCACAGCTGGCTACTCTGACTACCAAAGCTGCAATCTGGAAAGAGTCAGA----------------------------TCACATTTCCATGTCACTTAGGACAGCGGTTTCTTCAGGAGGAAAGAGTT----ACTAAGAATCAA----TGAAAAGCA-CAAACAGAATTCCTATTTCAAACAAAGGGCTG----CCCACCCTTTC--TGC--------CCATGGAATTGT-----------TAAACGTATTTA a score=232958.000000 s hg15.chr12_random 326745 1937 + 590431 AATGGTAAAGTATCAGACAGAATTTCACT---CTCCTTACAATATCAAAATGAACTTTCAAGAAATATTCAGGTGACTTTTAAATATCCAGATATCATTGAA-AAAACTAATAAAACATCAGACTTCACAATTAGATTTGCATTTGTATATTATTTGTTTACTGCATTTATTTCAACTTGAGTATGTGTCTATTACTTTCCTTTTCTTTCCTTTTAATAATTTTTGTTTTTACTTTTTTTTTCAGATTCTTCTAAAAAAAGGAAAATTCTTAGTGTCAGATCTTCATGTCCACAAACTGCATTCCACAATTCCACAATAATGCAATTCTGTAGTCACTGGACTACAATTCCTTTTACCaaaaaaaaaattaaataaaaattttaaaaaaaGCTTATTTACCTTCCTCACTTTGAAAATACAAACTCTAACACAAATCAGAACAGATCTC-----------------TATTTTTT---------A-AATACAGGAAATGTTGTGATGAATGTTCTTATAGAT----ATGAAAGGCATGAACTAGCTATACAAAGTTAATC-TTCAAGAAAGTTTAAACTACAAATACCCCCACATAAGGTGACTTTCGCTCTCTGTGAACCTCTGTTCAGTTCCTATAGCACACCCTCAGCTACCTAGGCAAATCAACCACATTAG------TGTC----------TTG-AGGATGGAGTTCTGAGAGAACAAGATGAGATGGTATTCATTCTCTTTTTATAA-CTCACCTCTGCTCTCTTTTGAAATGCTAAACATTAGAAAAGTTAAGCTATTTTTTCTGCTGGTATCCAAAGAACAATTAGCAAATCTTCTACCTGTCTCTTTGAAATAGGTCTTACAATAGTTAAGCAAGGGGCTCATCTATCATGCCAGTCAAATCATCAGAGGGGCTCACATTCTATTAGAACATGACAATGGAAAATTTACAAAATATTATTCAAAATTTACAAATATAATTCAAAAAACCAATTTAGAAGATTTCTCCTTTACCAAGCCTAAAATTATTTTTGACTTCATATAAAGGATT-CAGATGTCTTGTACTACTTGGCCATTGTCAAGAATCACTGGGAAATAAGAACAAACAGACTACATGATTACA-TCCATCAGAAATATTTATAATCATAGACAATCATTTAAAAGTAGAAACTATGAATTC--ATACTAACTGAATGCATCAGTGTTACCAACATCAATGCCAACACAAATAGAAAGATGTGACTCCTAAACTATGAGGTCTGAATG----TCACAAATTTTCTCCATGTTCTT--AAAGTTTCCTGTGTGGGGACATCATAAAGCATATCCTCTC-TAGAAATAAAGAAAGCCAGCTTGAAAACCTCAATCAC-AAAAGCAGAGCAAT--TTTTGTGCTGCAATTTCCACAGAGAGGATTTAT-TTATGTGATCTATGGAAGCCATCATTAAATGGCTTCTGGGCTCCACACTAGTCTGTAGTTCTCCAGGCTGACTCCTTTCTCACTGCTCCATGGCA-GCCTATTAACCTTTTTAGTTTATCTGTGACCCTAACAGCAAATCCCTAATGGCATAGGGGCAGGAAAGAATCAAAACAGAGGTTTCTTTAAAGGTGTGTTTTGTTT--------ATTTTCTGGAAATCACTAATCTGATGCTCTTACTATGAGTCCAAGGGGACAGGGATGGCATCTAATCCTCTGCCCTATACACACCACATAATGAATTACCAAAATTAAGAGCATGCTG--AACTACA----------GCTTTCTAGGGCTTAAGGTACTTCCTGGATAGATAGCTACTTTCAGATGCTACGTACACCAGGAGTACAGTCAAACTGTATTTCAATAGCATGAACAACTCCCAATGGTACATGAAAAATGGACAAGAAATGCCTTAAACCTTATAATAACACTAGCTAACAAAGGTTGAGCAGTTCAAAAGAACCAGAAAACATATAAGTTCCTTACAT--------ACATAGAGTCCAAGTGCTCGTTTTTTATACTTGAAAAA s mm3.chr10 7702332 1828 - 130738012 AATAGAAACGTATCAGATAAaacattactcctgtctttaaatttttaaaaggtactttcaagaagcatttagatgtcctttacatactcACATGTCACTGAAGAAAACAAATAAAACATCGGACTGCGTGATTAGATTTTCATTTTTATATTACCAAGGTG----ATATATTGCAGCTTGACTATAT-TGTGTTA-------TTTCATTCC-----------------------------CTCAGATCTGTAT--GAAAAGGAAGATTATTAGTCT-AGAGCTTTAATTTAGTGAACTCTGTTCCATAATCCCGTAATGACTCAATTTCTTAGCCACTCTCCCACAACTGCCTTTAC----------------------------ACGAGTCTGATTTATCTCCCTCACTTGGAAAATATAAACTGCAGTGCACTTCAGAGCCGATCTCCCGGGCTCTTCTTTCTTTCTTTTTT---------ATAATGCAAGAAACTCCAAGGTG--TGTTCCCACAGATTCAAATGAAAGGCAGCAAGTAAAGCCAAAAAGAACGCC-TTCAAGAATTTTTAAATTATTGACA-TTCCACCGGAGCTGACCTTTGCT-TCCATG-GCCCGTCTTTAGTTAGAGTGATGCAGCCTC--TTGACTAAGCAAATCAGCCATGCAGGGCAGGCTGGCACTAACAAAGTTGTAGGATGGA--TTAGAGAAAGAAAGACGGGAT-----------TCTTTTTATAACCTCACCTCTGCTCTCTTTTGAAAAGCTGAAAAATATCAAAGCTAAGCTGTTTTCCCTGCTGGTACCCAGAGAGCAATTATCTTGTCTTCCACCTGCCTCCTCGGAATAGGTCTTACAATAGTTAAGCAAGGGACTCATACATCATGCCAATCAAACCACCAAGTGAGTTCACTTCTTATTAGAATGTATAAATGGAAA-------------TATTCATAGACTCCAAATATTATTCAAGAAATCAATTTAGAGGCTTTCTCTTTTTCGAACCCAAATACTATCTTTGAGTCCATGCAAAGGATTTCGGATGCTTCATGGTACTCAGCC----------AACACTGGGAAATAGGAGCCGCCAGTCAACATGATGGCAGTCCATCAAAAATATTTATGATTACCAGTAATCATTTAAGAGTAGGAATGGTGAGTTCCTGTACCAATCAAATTCATCATGATGGCCAACACCCGTGCCCACGC---CAGTGAGCAGGGACTGGGAACCTCTCAGGTCCCCACCCCCACCACCAACCCCACACAAGTTTTTTAGAAGTTTCTCAGGTCAAGATATCACAAACTATACACTCTT-CAGAAATACATAGAAGCAGCGTGAAAATCTCCATCACAAAAAGAAATGAAATGATCCCGGGCCACTCTTTT--CAAAGGGGATTAGC-TTATGGCATCGACAGAGGCT-CCAATAAACACCTCCTGGGCTCTGCTCCAGCCTCTTGGTCT-CAGGCTGACTCCTTTATTATTGCTTCAGAGCA-GGCTGTCACCCTTTTCATTTTATCTGTGACCATAAGAGCAAGCTCCATGTGGCGTC-AGGTAGGACAGACTCCCAGCAGATATTTGTTTGAA-GTCTACTTTGTTTGTTACTTCATTTTCTAGAAATCATGAGTTTAGTGCTAATCT--TGCATCTCAGGTGACAAACACGGCATCGATCCTTTTCCCCTCGA------ACATGA------ACCAAGTTTAAGAGGATGCTT--AAATAAAGAGAATAAAGGTCTTACAAGACTTAGGCTAACTCCTGGATAGGAGGCCATCGTCAAATATCACAAGC-CTAAACATATACTCAAATTGTATTTTAAAAGCATG---AACGTCCACGGGTACATGAACAATAGATAGGAAAT--------------------------------------------------GGACCAGGTAGTATGCAAATGAGCTCCTTGTGAGTGTGTGTTGAAACCAGGTGCTTGTTTCTTATACTTGAACAA s rn2.chr7 60512195 1801 + 139049774 AATAGAAAAGTATCGGATAAAATATTACT---ATCCTTAAATTTTTAAA-GATACTTTCAAGAAATGTTTAGATGCCCTTTCCATACCCACATGTCAATAATGAAAACAAATAAAACATCGGGCTGCATGATTAGATTTTCATTTTTATATTACTGAGATG----ATATATTGCAACTTGACTATAT-TGTGTTA-------TTTCATTCC-----------------------------CTCGGATCCGTAT--GAAAAGGAAGATTATTAGTCTCAGATCTTTAATTTAGAGAACTCTGTTCCATAATCCCATAATAACTCAATTTCTTAGCCGCTCTCCCACAACTGCTTTTAC----------------------------ACACATCTTATTTATCTCCCTCACTTGGAAAATATAAACTCCAGTGCACTTCAGAGCTGATCTCCTGGGCTTTCATTTCTTTCTTTCTTTTTCTTTTAATAACACAAGAAACCATGAGGTG--CGTTCTCACAGATTCAAACGAAAGGCGGCGAGTAGAGGCGAAAGGAACACCCTTCGAGAATTTTTAAATTATTGACA-CCCCACACATGCTGACCTTTGCT-TCCGTG-GCCCGTCTTCAGTTACAACGATGCAGCCTC--TTGACTAAGCAAATCAACCGCACAGGGCAGGCTGGCACTAACAAAGTTGTAGGGTGGA--TTAGAGAAAGAAAGACGGGAT-----------TCTTTTTATAACCTCACCTCTGCTCTCTTTTGAAAAGCTGAAAAATATCAAAGCTAAGCTGTTTTCCCTGCTGGTACCCAGAGAGCAATTATCTTGTCTTGCACCTGCCTCCTCGGAATAGGTCTTACAATAGTTAAGCAAGGGGCTCATACATCATGCCAATCAAACCACCGAGTGAGTTCACTTCTTGTTAGGATGTATAAATGGAAA-------------AATTCATAGACTCCAAATATTATTCAAGAAATCAATTTAGAGGCTTTCTCCTTTTTGAATCCACATACTATCTGTGAGTCCGTACAACGGATTGCAGAC------TGGTACTCGGCC----------AACACTGGGAAATAGGAGCCGGCAGTCAACATGATGGCAATTCATCAAAAATATTTATGATCACCAGTAATCATTTAAGAGTAGGAATGATGAATTCCTGCACTGGTCAAATTCATCATTACGGCCGACATGCATGCCCACGC---CAGTGAGTGGGTGCTGGCAACCTCTCTGTTTTTTTTC----------------CATGAGTCTTTTAGAAGTTTCTCAGGTCAAGATACCAGGAAGCATACACTCTTCCAGAAATACATAGAGGCAGCGTGAAAATCTCCATCAC-GAAAGAAATGAAATGATCTTGTGCCACAATTTT--CAAAGGGGATTAGCTTTATGGCATCTATGGAGGCT-CCAATAAACACCTCCTGGGCTCTGCTCTAGCCTCTTGGTCT-TGGGCTGACTCCTTCATTATTGCTTCGGGACAGGGCTCTAACCCGTTTCATTTTATCTGTGACCGTAAGAGCAAACTCCACATGGCATC-GGGTAGGACAGACTCCAAGCAGATATTTGTCTGAA-GTCTTCTTCGTTTGTTACTCTGTTTTCTGGAAATCATGAATTTAGTGTTGATAT--GGCATCTAAGGGGACAAACATGGCATTCATTCTTTCTCCCTCTA------ACATG-------ACCAAGTTTAAGAGCACATTTCAAAGAACAGAGAATAAAGGTCTTACAGATCTTAGGCTAACTCCTGGATAGGAGGCCATCTTCAAACATCAGGAGC-CTAAGAACATACTCAAATTGTATTTTAAAAGCACG---AACTTCCATAGGTACATGAACAACAGATAGGAAAT--------------------------------------------------GTACCAGGAAGTGTGCAAATGA---------------GTGTTGAAGCCAAGCGCTTGTTTCTTATAGGTGAAGAA a score=28750.000000 s hg15.chr12_random 330179 312 + 590431 AGACTAAATGCAACAATGTGATGGAAAGCAATagaaaaggcct--ctctagaaaggtggcatttaggctgaaatcggaatgctaag--------------aaggaacagctctcggacccgggaagg---tcagcatgtggctagagcacaggaagcgggggtg-agaaaaggatc----acaaaataagctcaaagagg--agacaggtgaatgatca-tgtaggactttgtaagcctgagtaaggagagtgatttttcttctaggtgagatgggaagctttgagggagttcaagcaggagagcaacatggtctcattcgcacttttaaaacattact s mm3.chr10 7705599 292 - 130738012 AGACTGAGAGTAACAGTGTGATGGGAAGCAGCGG----GACCCAGCACCGGGAAGGTGACATTTAGGCTAAAATTGGAATGCAAGGAAACCTGCACTAG-AGGGAGTGCGTCCTAGA--CAGGAAGAAATTCAGCAGGTGGCAA----AC------CAGCCATGAGAAGGGAGATC----AGGAAACAGGCTCAGGGAGGACAGGCTGGTG--TGAATAGTGAAGGGCTTCAAGGACCTGAACAGGGCGAGTGGGTCTTCAT-GAGGAGACACGGAAAGC---------ATTTGAAAAGGAGAAAGGCAGGATGTCATT--------------ATCATA s rn2.chr7 60515332 302 + 139049774 AGACTGAGAGCATCAGTGTGATGGGAAACAGCAG----GACCCAGCGTCGGGAGGGTGACATTTAGGCTAAAATTGGAATGCAAGGAAACCTGCACTAGAAAGGAGAGAGACCTAGA--CAGGAAGGAATCCAGCAGGTGGTAA----ACGTGTAACAAGCCTG-GGAGGGAGCTCTCCTGGGAAACAGGCTCAAAGAAGGCAGGCTGGTG--TGACTAGTGAAGGGCTGCAGGGGCCAGAGCAAGGAGAATAGGTCTTCAT-GAGGAGACACGGGAAAC---------ATTTAAAAAGGAGAAAGGCAGAAAGTCATT--------------ATCATG a score=46592.000000 s hg15.chr12_random 330593 584 + 590431 TTTCAAAAATTACTTCAACTTCTCCATGGAGGGATGTACTGTTGGGACATaataatccatgggaggactctaaagagagttgtagacctg---agccatgatgttagaggagaggagaca-atttgagatagcttttga-----atattagtttaatcatacctggctgacaggataaatgtggagaataaggctaacttctagatacttggcttgaacaactgggtggatgatagtgtca-tcctgagatgaaaaagactagaaaaagcaaacttgtgaggataggggaaatacagttgtgttttggctgtgt--tctttttgagatgcctaGAACAT--TAGTTCTTGATGTTTTATTATGCAATACAC-TTCACTGCACtaatatttataa----------aaaattaataGCATATTCATAAGCAAGGCAACTAAACTTCTTACATTACATTTCAGGTACTA--TTTTTTCACACTCATTTTTCTCCAAGCATCCTGGCTTAGACAAAGTTGCATATCCAGAGAAAGATAGGTAAAGTAAAATGTAAAATGG-GCATGAGGACGAACATCCTTGA---GCAAAAATCTTGCACCTTTTGTGTTAAAATAAT s mm3.chr10 7705891 533 - 130738012 CTTAAAAGGTGATTTCAACTATTTCGTAGAGAG-TGGATTGTAGGGAAACA---GTCTCTGGGAGAATTCTCAAGAAAGACG-ATGCTGGGGTAGACA-GGTGTTGGGAGAAAGCAGATGTTTTTATGAAGTGTTTTGAACCATATTTTGGGTTGATTGTAATGGCCTGACACCACAAATGT-------------GACTTCTACATATTTGACTTGCACAGCTACGCAGATGAGCACACCAGTACTGACGTGAGAGGATCTGCAAAGGGGAAGA-TGAAGGGA-------------------------CTGCATTCTGTTTCACAGAGGC-----ACAC--TGATCCTTGTTGTTTCATTGAGCAGCGAACTCCCCCTACTCTGATATTTATGA-----------AAATTAATAGCATCCTGATGGGTAGAGAGACTAAACTTACTAT-TGACATAGCAGACATTATTTTTTACCAGACCCATTGTTCTCTGTA---ACCGTGTTAGACAAAGTTTCATGTCTGAAGAAAGAT-------GCATAAGCTAAAACAGCCCGTGAGGTTCAACACTCTAGGACAAC-AACATCTTGCACCTTC-------AAATATT s rn2.chr7 60515634 549 + 139049774 CTTAAAATGTGATTTCAACTACTCCATAGAGAG-CAGATTGTAGGGAAACAACCATCTCAGGGAGAGTTCTAAAGGAAGATG-ACGCTTGAATAGGCA-GGTGTTGGGAGAAAGTAGGTGTGTTTATGACGTGTTTTGAACCATAATTTTGGTTGACCGTAATTGCCTAACACCGTACATGTGAGCGGTGAGGCCGACTTCTAGACATTTGACTTGCACAACTA---AGAAGAACGCACCAGTACCGATGGGAAGGGAGCAGGGAAAGGAAAGCTTGGATAGA-------------------------CTGTGT--TGTTTCACACAGGC-----ACACATCGATCC---TCGTTTTATCAAGTATCACAC-CTCCCTCCTCTGATATTTATAATATATACTAATATACTAATAGTATCCTGATGGGTAGGGAGACTAAACTTGCTCT-TTACATAGCAGACATTA-CTTTCACCAGACCCATTCTTCTCCGTA---CCTGTGCTAGACAAAGCTGCATGTCTGAAGAAAGAT-------GCATTAGCTAAAAGAG-TCATGGGGTTCCACACTCTTGG---AC-AACATCCTCCACCTTC-------AAATATT a score=115185.000000 s hg15.chr12_random 331799 1644 + 590431 TAATAATCCATTCCAAAGATCAAAATACCGAATGATCCAAATAAGATGGAGCAAAGT--------AAAGAAAGAAAACTGATACCCTGATCAACTGAAAAAGTTTACTTTAATCCTAGGATGACTTATTCTTTTGCAATGAGAACTGTTT---------------------AGTTAGCTCTTAAATGATAGGGGA-AGCCCATCAACCTAAAAAATGTTCTTGTTCCCATCTAAAGCCAGTGAAACCTTTAAAATCTCTTCCAACTGAGCAGCACAGAGGACAGAGCAAGAGCTAAAACAAACTAATCCAAGATACTGCTTCTGATGGCAGGAAGTGCCATATCCAGTTTATAGTATCAT---GGAAAACAAAAGCAGGCAATACAGATC------AGGGGACAGAGTAAGACAAAGAATAGAGACTGGAATCTGAAAAACATCCTACGGATATCCTAAATGTTCACCAGAAGATTTCACTATTACTTTGGTATTGTTCCCTTCTGtgtaccacacat-tttacatatcttgtattcctccatttcatctttgcattaagcctttgaggtagatgttattatACTATAGGTAGGTGTTATTATCTTATCTATATATTATAGATAAGAAAACACCTTTGAGGTAGGTGTTATATTATAGGTAGGTGTTATTATCTTATCTATATATTATAGATAAGAAAACACCTTTGAGGTAGGTGTTATATTATAGGTAGGTGTTATTATCTTATCTATATATTATAGATAAGAAAACACCTTTGAGGTAGGTGTTATaggtaggtgttattatcttatctatatattatagataagaaaactcatgttca-gaaatctcatgttcagaaatacttgaatagcattgcacagttggtaagtggcagagccaaaatttgactttaggtctgtttaacttcaaaattcatgttAGTATCCCCTTATTTT------TTATTA----CATTTTTGATTATATGGTAGATACTTAGAATAGTTTTAGTTATCTGCAGTCATAAACTGACAGGCCATGAACCAAGTGGACCCACATGGTACTGAGGTCTTCCTATGCCACGACTATACAGATGAAAATGAATCATTTTGTAGAATGGCAAGAGTAGGGATTGTCTCCAGTGAGATGAAATAGCCCTCACACATGGCATGCTGTTA-AGCAAACTAGGTGTCTTTGTATCTTGACTGTGCCATA--------------GTATACAATACAAATGTTTTGA------GTCTATGTGTGCTGAATTCGAGGTTGGTGAGTACAAACTTGCTTCCAGTTTGTTGACTTGCCTAGCATAGCATTAAATAGGA-----ACTATTTCTCATTGAATGTACAATAATTAAC---TTATGCAGCACAGTCATTTAAGTTTAAAGTGTTTTACCCTTCCCCTTCCCAAAGTTAGAACACACACACACA------------CGAGAAAGATAATGTATGGCAAAGTCAAGATTAA------TTTT-------------------AGGTTTCTGTGCTCAG---ACAGTAC------CATGGCATTCCAGCCAGCATGACTGCACAGGCACAGAGTTTTTCCAGCAAATATCATTAAGTACTTTATTTTTGCATCACAAAAATTTCAATACTTAATTTTGCTTAATC----TTGAAATTAAAGGGTTCATTTAAA---GGGAACATTTTTTAAAACCCTTCAAATTCTAATCTCTACTGCAATTTAATTGTTTGGAGAGT---GACATGTCTTATGA s mm3.chr10 7706425 1373 - 130738012 GACTAATCTATTTCAAAGGTTAAAACACAGG-----CCAAA-GAGATGG----------------GGAAAAAGCAAATTG----TCTGATCGACT-----------------------GATGGATTGTTCCTGTGCGATAAATCCTGTTCAACGGCTGACGTGGTGTGAGGATTCATTTCCTATCTGATACGGGAAAGCTCGCCTACATGAAAAATGTTCCTGTTTCCACCTCAAG---------CCTTTACAATCACTCAAATAATAATGTCAGAGAGAACAGCGCAAGAGATGAAAGCAACTGACCCAAGA-TGTGCTTCCCACATCCACAAGTGCCAAAA--AGCTTGGAGGATTATACAGGGAAGCTGA-----GCAATGCAGGGCAGGGGCAGGAGGCAGAGTAAGTCTACAGATAA----------TTAAATACCCCTCCATAGTGATCTCA-----------------CTCACTATTGCTCCACTGTTGTTCCCTTCTGtgtactctgcat-tttatatatctt---------------------------------------------------------------taatatgatgtaatcaat-----------------------------------ttatattacagg-----------------cctacatg----------------------gagg--------------------------------------atatattatacaaatgaaa-------------------------------------------------------------agaattcatgcacaggaaagatagcatacagaaa---------------gtgcacacagtgaagtgtaaagccaagatttgactttaggtctagttaacttcaaaCCTT-TATTAGTTAGCGCTAACTTTTATAACTTACTAGAAGCATTTCAGATCACATAGTATGTAGCCAGTGTGGTTTTTATTTGCTGCTGTTATAAAGTGCCAGGTCATGAGCCAAGTGGACCCAGGAGGAGGGAGGGTCTTCCTATTCTGAGACTACACAGATAAAAGTGCATCCTTGTACAAAATG---AGAGAAGAGCTTATTTTTCATCAGATG-AATAGCTCTCAAACAC-ACAAACTGCTGCAGCAAACTGGG------TCTATTTTGTCT-TGCTGTTTGTCTTATTATGTCTTGTATACTAGAAGTGCCTTTAAAACCCGTGCATGTCTCCTGAGTTTGAGGTTGGTGAGTAAAAACTTGCT-------------------TAGAAGAATAGTAAATGGGATTCAGACTCTTTTTCATTCAA-----ATTATTTAACTATTGGTGTCACACAATGGTTTATGT--------------cacacacacacaca-------aacacacacacacacacTTGTGTGTGCACATATGGCCATGTATGAGAAAACTAAAATTAACATCACTTTTCTATATGTAGAGAATATACAGACTGCTGTATTCAGACTACAGTATGCAGAATATAGCATTCCATTTAGCAGGACAGCATAGGTGTAGAGTTTTAATAGCATATGTCATTAAGCAATTTATTTCTGCATTACAGAAATTCTGATAGTTATCCTTCCTAAATATCTGTTGAAGTCAAAGGCCTCATTTGAAAACAAGGACATT--TTTAGACCCTCC-ACTTCCAGACACTAATGTAACAGAAT-ATTTGGGAGCTAATGACAATTATTGTGA s rn2.chr7 60516184 1339 + 139049774 GGCCAATCTATTCCAAGGGTTAAAACACAGG-----CCAAA-GAGATGGAGCCAAGTGGAGGGGAAGAGAAAGTAAATTG----CCTGATCAACT-----------------------GATGAATTGTTCTTGTACGATAAATCCTGTTC-ATGGCTGACAGGGTATGAGGATTCATTTCCTGTTTGATAACGGACAGCTTACCTCCATGAAAAATGCTCCTGCTTCCACGTCAAG---------CCTGCACAATCCCTCAAACAATAGTGTCAGACAGAACAGCACAAGAGAGGAAAGCAACTGGCCCAAGATTTTGCTTCCCATATGCACAAGTGCCAAAG--AGCTCGGCGTACTCTACAGGGA-----------------------------AGGAGACAGAGAAAGCCCACAGA--------------TAAATACTCCTCCATAGCGATCTC----------------------CTATTGCTCCACTATCGCTCCCTTCTGCATACTCTGTGGACTTATATATCTT---------------------------------------------------------------TTCTACAATATAATCAAT-----------------------------------TTATATCACGGG-----------------CCTACGTG----------------------GAGG--------------------------------------TTGTGCTATACAAGTAAAA-------------------------------------------------------------AGAATCCCCACACAGGAAAGACAACACACAGACA---------------GcacacaggatcaagtgggaagccaagatttgactttaggtctggttgacttcaaaCTTT-TATTAGTGACCCCTATCTTTTATGACTTACTAGATGCATTTCTGACTACATAGTGTGTAGCTGGTGTGGTTTTTATTTGCTGCTGTTATAGAGGGCCAGGTCATGAGCCAAGTGGACCCATGAGGAGGGAGGGTTTTCCTATTCCACTACTATACAGATGGAAACACAGCCTTGTACAAAATGAAAAGAGGGGAGCTTATTCCTAGCCAGAGG-AACAGCTTTCAAACAC-ACAAACTGTTACAGCAAATTGGG------TTTATTTTGCCT-TACTATG--------------TTGTATAATAGAAGTGCCTTTAAAAACCACACAGGTCCCCTAAGTTTGAGGTTGGTGAGTGAAAACTTGCT-------------------TAGCAGAATAGTAAATGGGATGTGGACTCTTCTTCATTAGA-----AATATTTAATTATTGATGTCACACAATGGTTTAAGTTGTacgcacgtatacacacacacacac----------cacacacacacaGAGTTGTGTGTGCACATATGACCATGTATGAGAAAACTAATACTAACGTCCCTTTTCTATATGTAGATAGTATACAGACTTCTGTATCCAGACTACAGTATACAAAAAATAGCATTCCACATAGCAGGGCAGCCTAAGTATAGAGTTTTAATAGCACACGTGATTATGCAATTTATTTCCACATTACA-AAGTTCTGATAGTTATCCTTCCTAAATATTTGTTGAAGTTGAAAACCTCATTTGGA---AAGGACATTTATTTAGATCCTCC-AGTTCCAGACTCCAGTGTAACTGGATGGTTTGGGTGCT----------------- a score=22520.000000 s hg15.chr12_random 333521 181 + 590431 TTCGTTTAGCTAACAAATCCATAGCTATAAAATGCCATAAAATTAAGAAAGTCTTGTTTCCTCTTGCTTCTGAAGCCATGAT-CTTCAACCATCAAATTTGTTTTCATAC-AGACAGTAGAATGCGAGCTTATAAATGAAATATTCACATCTAGCACATCCAAATCCTTCTAACTACATGAAt s mm3.chr10 7708446 171 - 130738012 TTTTTATAGCTAAAAGATCCACCAATAAAAAATACTTTGAAAATA--AAAGTGGGTTTCACACTTGCTTCTGAGGCCA--AT-CTTCAAGTATC-AATTTATTTTCACAAGAGACAACATGAAGCCAACTTATAAATGTAACAGTCACATCTATTACATCCAGA------CACCTTCAGGAAT s rn2.chr7 60518159 173 + 139049774 TTTTTATAGCTGAAATATCCACCAATATAGAACACTTTGAAAATA--AAAGTTGGTTTTACTCTTGCTCCAGAAGCAA--ATCCTTCAAGTATC-AATCTATTTTCACAAGAGACAACATGAAGCAAACCTATAAATGTAATAGTCACATCTATTACATCCAGAG-----CACCTCCACAAAC a score=17485.000000 s hg15.chr12_random 333998 213 + 590431 TTGAAGATCTTGAATTTTAAAGATTTAATGACTACAAGAAACTCATCACAAATGAAATATGGACATAAATGTTATTACATTTTCAGATGACAACCATTGAACCAATAACACAACATTCTTCTTCATTGTTATGAAATGAAATATTTGTATaacaataacagctatcacttgagtacttactatatgctag-gcactattt---atatattattt--aat s mm3.chr10 7708617 184 - 130738012 GTG----------ATGCTAAGTACACAGTGATT-CAATAAACTCATTACCCATGAAGGATGGGTTTGAGTATTATTGCATCT---------------------ACAAACACGACATTATTGTTCATGATTACTAAATGAAATAAATGTGTGATTAAAATAATGATCAGTT-ACTACAAGACAGATGCTAGTGTACTAGGTACAAGATGTCCTTT--AAT s rn2.chr7 60518332 200 + 139049774 GTG----------ATGTTAAGTACACAACAATT-CAATAAACTCATTA-CCATGAAAGATGGGCTTGAGTACCATTACATCTTCAGGTG------ATTGTTCAACAAACACGACATCATTGCTCATGATTACTAAGTGAAATAGATGTGTGATTGTGGTAACGGTCACTT-ACTACAAGGCAGATGCTAGGATACAAAGTTCAAGATGTCCTTTTAAAT a score=38535.000000 s hg15.chr12_random 334211 507 + 590431 atgtaaataatttaatGTACTGTGTATTTCATTAAGGGGGAAATAAGGAAAAAGCAGTGTCCATCATGGTGGACATACTAACTATCCACTAAAATCAGTTATTCTTCTGATAGTAATTAATATGTAGGTAGGACACAGATGCTAagctagagggcatacatccccaggctcttttgcagttaggcatggccatgtgtccaagctcttgacaatggaatatggaaggaggcaacatgtgtaaattccaCCTCTCTTGCTTGAAT-GGAAATCACTGGACCCAGATTAGACTCTCTCCCCCTTCTCACAGCTAGACTGGTCACATCAGACCTGTTCCTAGACAACTATAAGGAGTGAAGCTGCCAGTCAGATAAAAAGATTAAACTTGGGACAATTATTTAATCATTTCATGTCCATTCATTTCAGCAGCTTAGCCTACCCAAAGTAATAGATcacacaggcacacatacacgcatatatatatacatacgc--acacatatatatT----------------GTTTT s mm3.chr10 7708992 429 - 130738012 aTAAGTACTATT---CGTA-TGCATATCCAGCTAATAGGAGAGTAAGG-AAAAGCAATGTCTAGCATGGCAGACAGGGGAGCTAACC------------TA-TCTTTTGATAGTAGTGAATCTGCAAGTGGGGAGTGGATGCCTACCTAGAG-----ACAGCTCCAAGCTTCTTTA-------------------------------GATGGTGAGACACAAGTAGAAGTGTAATGTAAAAAATTCA-GTCATTTGTTTGAAC-AGAAAACACAGA--CCAGACTGTACTTTT--CCCT-----------------------TCAGCCCTGTTTCTTGGTGACTACAAGAT---CAATTGTCAGCCAGATGAGAACATTGAATTGATGGCTATTATATAACTAGGTGGTGTTTATGTCTAGTAGTAGATCA-CCTACCCTAATTAAGA-ATGA-------ATATATCCACATACATATGTGCACAAACAT--AAACATGTGTTTTCTAGTCTTTCCTTTTCTTTTC s rn2.chr7 60518733 425 + 139049774 ATAAACACTATC---CATA-TGCATATCCCATTAATAGGAAAGTAAGG-AAAAGCAACGTCTGGCACGGTAGACAGGGTGACTAACC------------TA-TCTTTTGACAGTAGTGTCTCTCCAGGTAGGAAATGGATACCTACCTAGAG---ACACAGCTCCAAGTTCCTTTA-------------------------------GATGGTGAAACATGAGTAGAAGTGAAGTGTAAAAAATTCA-ATCATTTGTTTGAACAAGAAAGCCCAGA--CCAGACTGTACTCTTGCCCCT-----------------------TCAGCCCTGTTTCTTGGTGACTACAACAC---TGATTGCCAACCAGATGAACAGGTTGAATTGATGGCCATTATATAACTATGTGGTCTTTATTTCCGGTAACAGATTA-TCTACCCTAATTAAGA-ATCA-------ATATATCCACAGACGTATGTGCACAAACATAGAAACATGTGTTTTCCAGCCTAtc----------- a score=72560.000000 s hg15.chr12_random 335118 800 + 590431 TTGTACTTTTCA------------AAAGGGAAGTGAATTTTGCCTGGTGTTGTTGTATTAAAAGTTAGC------------------------------------TAAGATCAGTCTTCCCTACTTCTTTATATTTGAGCATGTCTGGTATAATCCATAGTATGCTGAAAGATCAA----ACAGACATGTGGAGAAATATGAAAAAAAAATTTATTTGAAGTTTCTTTGAGAAAAAGCCTCCAGATT---------ATCTTCAGTTTTGTTAGCAGAGTAACTCAGTGAGATTTAAGGCATTAGAAACAGA----------------AGtt--------------------------------------------------------------------------aatttaaaataaataca-taaatatttataGTGCAAAAGCTTT-------TTTGAAAATCACTTTTCTGCCCTACACTTCAGCAAA--GTGTCACTG-----TGAGATAATTATACTTTTTCTGCTTCCTAAGATTTTCTTTAGGGTTTTCAATTCATCTACTCCAAT-GAAATCTAATGTTCTCCTCACTACTCTTCCAAATTCCTCTTCTGCTAAGGTTCGACACCACACATAAGTCTGTGTATTGTGGCCAAG-------AACCTTCCAGGAGCATTCTTCACCCTGTCTCATGGTGTATTTAAACAATACTTCTCCTACCCCCAAACAG---------------AAGGGAATAA--------------------------------AACAATAGC---------TTCCACTAAATACTTTCTTCCACAGAATTACCCAACAGTTCTATTGCTATGCACACAAAGCAC---AAGGAAGAAAGATATAATTGATTTCTTATCACGCAAATATCTTCATGGGTTCATATTCAGATGAGACAG-CTTCTTTGAAGGCCCTGGAGATGTGCAGAGCTGCTC---AGAGCAGCATCAAAGACTTTCAGGAAAAAATAATCTAAAACTGGAACCT s mm3.chr10 7710988 936 - 130738012 cTACACCCTTAAGGTTTCACTTGGAAAGGTAAGCTGATTTGAACTG-------TCCATTAAAAATAAAA----------------------------------------------TGTCCCTGTTTCTGTAAATTTGAGTGCCCCTGATAC-ATCTTCAATGCTCTGAATGATCAAGCACACAGATCTATATAAGAAAATGGAAAA-------ATCTGAAGTT--TTTCAGGGAAAGCCTCCAAGATCTCCAAGACATCTTTTGTTTTTTTCACAGGGTAATTCAGCAAGATTTAAGGCATGAGAAGTAAATAATTGATTCAGTGTTAGTTTGATTGAATCCTTCTGTAGACAATACAT-------GGCATGCATTGTAACCCAGAAATGTGAGTTCTTCCTATCAAATTAAGATAAATAAATTCAATATTACCTGGGTAAAATTTGCATCCTTTCTTAACAGCAACTTTTCTGCCTGTGAGTATTCCAAATCATGTGACTGATAGTAGGGATAGCTGAACATAATTTAATTCCCAGAGTTATCTATGATGCTTTCAAGTTATCGTCCCCAATAAAAATCTGATGATTTCCTCCCAATACCTCAAATT---TCTATTGCTATGGTTAGATACCACACAAAAGTCCTTCCTT------CAAG--------GCCCTTCAGGGGCCTTTCTTGTTCAGGCTGAGGCTGTATTTACATAATGA---TCATGACAAAAAagaaggaggggggagaaggaagaggaggagggagaggagaatgaggaagaggaggagggggagCAATAGTAAAGCATCATTCCTCCATCTTCCCCTTCCTGCAGAATAACCCACTGTGTCTTTTG-TGT---AATAAAACAAAATAAGAAATAACCATATACTTTACT-----AAGCATAAGTATCCTTACAGGCCAGTACTTGGGTAAGACAGCCTTTTCTAAAGGCTCTACAGCTGTAGATTGCTGCTCCATAGAGCAGCAACTTCTCCTCTGGGGGAAACAAAAAC--AGGATGAAACTT s rn2.chr7 60520812 957 + 139049774 TTATGTCTTTAAGGTTTCACTTGGAACGTTAAGCTGATTTGAGCTG-------TCCATTAAAAATAAAAAGGTATTCCCCTGGTGGTGGTGTATTAAAAATTAAATTGGATCAAATGTTCCTGTTTCTGTATATTTGAGTACCCCTGATAT-ATCTTCAATGTTCTGAATGATCAAGCACACAGATCTATGAAGAGAAATGGAAAA-------GTCTGAAGTT--TTTCAGGGAAAGCCTTCAAGAT---------ATCTTTAGGTTTTCT-GTGGAGTAATTCAGCCAGATTTAAGGCATCAGAAATAGATCATTGGTTCAGTGTTAGTTTGACTGACCCCTTCTATAGACAATACATCGGTCACGGCCTGCATTGAAACCCAGAAATGTGAGAAATTCCTATCAAATTAAGGTAAATATATTCAATATTACTCATCTAAGAGTTGC--------TTAACAGCAACTGTTCTGCCTGTGATTTTTCAAAATCATGTGACTGACAGTAGGGATAGCTGAACATATTTTACTTCCTAGAGTTTTTCATGATGTTTCCAAGTTATTGTCCCCAATAAAAATCTGACCATTTCCTCCCAGTACCTTTAAAA---TCTCTTGCTATGGTTAGATGCCACACAAAAATCCATCTTT------CAAGACCCTCCAGCCCTCCAGGAGCCTTTCCTGTTCAGTCTCAGGCTCTTTTTCCATAATAATGCTCATGACCAaaaaaca---------------aagacaaaaacaaaaacaaaaacaaaaaaaa-----------aCCAGAAGTAAAGTATCATTCCGCCAATTCCCCCTTCTCACAGAATAACCAACTATGTCTGTTGTTGTGTAAATAAAACAA---AAGAAATAACCATATATTTGGTT-----GCCCACAGGTGTCTTTACACGGCAGTACTCTGGTAAGACAGCCTTTTCTAAAGGCCCTACAGCTGTAGATTGCTGCTCCACATAGCAGCAACTTCTCCTCTGAGGTAAACAAAAAC--AGTGTGAAACTT a score=51850.000000 s hg15.chr12_random 335923 446 + 590431 AAGG-AGAAAAGAGCTCATGAGTGGAAGTCTAAAAGAAATGAAGCCTCGATGAGTTTTAGATTCCTCATTATATTAGTCTAGGTTTAGGTGATTAACTTTCTGATATGTTCAATATAAATGAAAATATTGCAAATTCTTCTAATCCTAGATAATTATTTATGGATCCATTAAGCATAAA-AGGAATTATTCAACA----CCAGATAAATTATTAAAGTCA--TTAATTACCAACATAGAGAATTATTGTTGGCTGACTTGATTAAGTCTCTCCTTAAAACCAACAGTGTAGAGACACTTC-TTTCAATTAATTTGACACTAGTGATTTCAGAAGCTGAAAAACATATAAACATGGTTTAATGAGGATGCTTTTATTCTGTGTTCTGTTCCCATTAATTGACAAAGAAATATTCACTGATATTTTGGCTCAAAGTCATTGCAAAAGCTATCTTTCG s mm3.chr10 7712005 422 - 130738012 AAAGTAGGGAAACATTCATGAGTCAAATCTGAAAAAGTTTTAGATGCCATTGGGTCTTACATTCCTCATCATACTGGTCTAAGTTAAAGTGGCTAACTTGCTGAGATGCCTAATGTAAATGAAAATATTGCATCTTCCTCTAATGATAGATATAGGTATATTTAGACATTATTTAGGGACAGGAATTATTTACTC----TTTGGCAAATTAACAAATTAATTTTTTTTATCA----------------TTTGCTTCTTCAAGCTTGTCTGTCCTTGAAAGCAACAGTGTAAATATACTGCTTTCCAATTAATATAGCACCAGAGAGTTCAGCTTTTGGAACAAATACTCAAACGGTATAATGAGG-TGTCTT----------CAAGTATCCGTTAACTG--AAAGAAATAGTCACTGGTATTATGATACAAATTCATTTCATAAGGTATCTTTTG s rn2.chr7 60523002 435 + 139049774 AAAATAGTGAAACAGTCATGGGTGGAATCTGAAGAAGAATTAGACACTATTGAGTCTTACACTCCTCATCATACTAGTCTAAGTTAAAGTGGCCAACTTGCCGAGATGCCTACTGTAAATGAAAATAGTATATCTTCCTCTAATAATAGACAAAGACATATTTAGACATTATTTAGGGACAGGAGTTATCTATTCACTATTTTACAAATTAGCAAATTAA--TTATTTATCA----------------TCGGCTTCCTCAAGTGGGTCTCCCCTTGAAAACAACAGTGTAAATATACTGC-TTCCAATTAATGTAACCCCAGAGATTTCAGATTTGGGGACAAATAGGTACATGGTATAATGAAG-TGTCTTCACTCTCCGACAGGTATCTATTAAGTGCCATAGAAATATTCACTGGTGTTATGATACAAATTTATTCCATAAAGTATCTTTTG a score=59993.000000 s hg15.chr12_random 336369 470 + 590431 CATAAGAGTAAATTAAAAATTAAA-ATTCTTTCTTAAATTAGCAAGTAATGATTGTTCAATTA-GAAAAGAGGAAA-GCTTGGCTACTCCTTTTTAAATTGCTAAAAGGAAAGTAATATTGTTGGTGACAGAACGAGGATCAGCATCAAGTGTGGCCAATTT--CGG--------------AGAAGAAATTTCCTTTAATGACTGGATTGTTAAATCCCTCTAAGGCTATGCAACAGGTATTATAAAGCA---TGCAATAAATTTTATAAAGACATCAAAC-CTCTTTTCTCCCTTGGCTGCCAGTATACCACTTTGTCCCAATTCTCTTCTGCACTCTCTAAAGACTAATCAGTATTTTCCAGTATTGCCTGTCTGCCCCCAGAGTTCTTTTCTTATTATGCCATGTACTCTCACAAGAGTACCTCATCCACAGCCATGAATCGCACTGGCACCAATATGTTAATTACCAAAATCCACATCTTCAACACAAA s mm3.chr10 7712704 461 - 130738012 TATAAGTGTAAATTAAAAATTAACAATGCTTGCTTGAATTGGCACATAATTATTGTTTAATGAGGAAAAGAGGAAATGCTTGGCTAGTACTTTCTGGGCTGATAGAAGGGAATTAATATTGTTACTGAAGAAACGAGGATCAGTATCAAGTGGGACTCACTTGAAGGAAGGGAAAAAAAAAAAAGAGAACTTCTTCCAATGTCCGGATTGTTAAATTCTCCCAAAGATATGCAATGGGTGCACTAAGGCAAAGCACGAGAAATTTTATAAC-ATATAAAACTTTTTTTACTCATGTGGTTAC----------------CTCAATTTCTTCCAAAATCCTCTGACAACT-CTCAATATTGTTC--------------ACATCCACAGGTCTCTTATTATCACTCTATGTAGTCCCCTAAGATGGCATCATCCACATTCATAAATTCATCTGTCACTACTGTAACAATGACGAAAATCTACTTCTTTAACAAAAA s rn2.chr7 60523722 443 + 139049774 TGTAAGTGTAAATTAAAAATTAAC-ATGCTTACCTAAATTAGCACATAATTATTGTTTAATGAGGAAGAAAGGAAATGCTTAGCTAGCACTTTCTGGGCTGAAAGAAGGAAAACAGTATTGTGACTGAAGAAACAAGGATCAGTATCATGTGTAACTCATTTGAAGG--------------AAAAAAAACTTCTTCCAATGGTTGGACTGTTAATTCTTCCCAAAGCTATGCAATGGGTGCTCTAGGGCAAAGCACAAGAAATTTTATAAC-ATATAAAAC-ATGTTTACTCACGTGGCTGC----------------CTCAATTTCTTCCAAACTTCTCTGACAACT-CTCAATATTGTTCA-------------ACATCCACAGGTCTCTTATTATCGTTCTATGTAGTCCCCTAAGATGACATTATCCACAAGCATAAATTCATCCATCACTACTGTAACAAAGACTAAAATCTACTTCCTTAACAA--- a score=48442.000000 s hg15.chr12_random 337850 527 + 590431 CTCTGGGTACCTCCATCATGAGCTATGGCCTTCATA----TCACC-----AGAGCAATGCCATGTGCGACAGGAGGAAGAGGGAAGAACACTAAAATGCTCCACCCTGGTTCACTTTGTCCCCTGGAGATCCATGTAGTTCAGCTTATGGGCATGTTTCACAAATTTTTCTTAAAAACAATTCTTTAGCTTCCAACTACAGCCTTTCTTTCTAAAGGACTCGAGTGTTGCCAGTGAAGTCACACTGAGTTTACGATGCCA-TGTTATCATCT--GCAGCT----GCCCCTCTCTCCAGCGTCAGCTCTTCAGGAACCACACACTAACATCTCCCTTGCAGGATGCTTTCCTCTAAACAAGTCTACCCATGAACAAAGAAGCCTAGGGAAATTGTTGGTCCCATACACCCAGCTACAACTGGAT--------------------------CACCCATA--------------CATGCCTC------------------------------------------------------TCTAT-------------------------------------------------------------CAAATATATATTTTATCAATTAATTGCAAATTAGTTGATATTCCTGATAGG----CCTCTG-------GGACTGTAGACAACACTGTGGCTTGATAAAAGTTTAACAGTg s mm3.chr10 7714056 652 - 130738012 CTCTGAGGACCTCTGCTGCCCACTGTGCCCTGCATATCAGTCACCTCACCAGGCCAGGG--ATCCTTTTCATAAGGAACACGG--------------GCTCTGCCCTGCATCACTCTGTACTCTAAC------------------TATGGGAATGTTT--CAGATTTTTTCTTAAAACAACTCCCTAGCTTCTGACTATATCTTCTCTAGATACAGAACTTAAGTGTTTTCTGCAAAGTCAAGCCACATTCATGATAAAAACAGCAGTACGC--ACAACTAAGAGACCCTCTCCACAACCCCAGATATTCAGGAACTACATACTAGCATCTCCTCTGAAAGCCTCGTCCTTCCAAACAAGTCTCTTCATGCAAGTGAAAGCCTGGGAAAATGATTAATTTCATACACCCAGAGACATCTGTATGTCTGTTTACTTTTAAAAGCTACACACAAACACA--------------CAGACCTCTTCTCAGATCTGAAATCTCAGAAGTTGTGTTTCTAAGCACACATTGCTCATTGATCTATGTTCTAGAGTTACAATAGTAAACTCACATGAAAAGGAATATATTAATATTGATGAAATTTACAAATATCTATTTTATCAGTTACTTTCCATTTATCTCATATTCCTGATAGGAATACTACTGGAGATGAGGGCAGTAGGCCACGCTGTAGTTTT-----AGTTTAATAACA s rn2.chr7 60528682 646 + 139049774 CTCTGAGTACCTCTGTTACCCACTGTGCCCTGCAGACCAATCACC-----AAGCCAATG-CATGCTTTGCCTAAGGAACATGG--------------GCTCTGCCCTCCATTGCTCTGTCCTCTAACATGCC--------CAGATTATGGGAACATTT--CAGATTTTTTCTTAAAACCACTCCCTAGCTT-TGACTATATCTTCTCTAGATACAGAACTTAAGTGTTTTCTACAATGTCAAATAATGTTCACGGTACAA-CAACAGTACACGTACAACCATGAAACCTTCTCTCTAACCTCAAAGACTCAGGAACTACATCTTAGCATCTCTTCTGAAAGCTTCATTCT-------------------------GAAAGCCTGGGGAAATAGTTAACTTCATACACCCATGTATACATATATATCTGATTACTTTAAAAAGCTATGCACACATACAGAGACCAATGTATGCATACCTCTTCTCAAA-CGCAAACCTCGGAAGTTGTGTTTCAAAGCACACATTACTCATAGATCTACAGTATTGAGTTACAATAGTAAACTCATATGAAAATGACTGTATTAATATTGGCAAAGTTTACAAATATCTATTTTATCGGGTACTTTTAAATTAACTCATATTTCTTATAGGAACATTGCTGGGGGTGAGGGCTGTAGGTCACACTACAGTTTT-----AGTTTAATAAAT a score=14747.000000 s hg15.chr12_random 338685 93 + 590431 TTTTAACAGCATGTTGTTACTAAATCTGTGATCAAAAATCAACATTCCTGTCTCAAAATAATTCTAGGATATTCAGGTTAATCTGACCCAATC s mm3.chr10 7714708 93 - 130738012 ATCTAATAGTCTATTATTACTAAGTCTAAGATCAAAAGTACACATTCTAGTCTCAAAATAATTCGGAGATTCTTGGGTTAATATAGCTCAACC s rn2.chr7 60529328 93 + 139049774 GTCTAATAGTCTATTTTTACTAAGTCCAAGATCTGGAGTTCACATCCTAGTATCAAAATAATTCAGAGATTCTTAAATTAATATAACCCAACC a score=30979.000000 s hg15.chr12_random 339643 275 + 590431 AGTGTGCATCTATTaaatccctgaa-cttctttggtcttcagtttc-ataatttgtaaaacaatgattgccactttgTATGAAATAGTCATAAATACAGTCataaataaaatatttatattctaaaatttaCAAGGTGACGGAAATGAAAAAAATGGTCTCAACTTATCTTTCTGTTAATGTCCATGAAAAGTAATCTCTACAACAGGTTCA-TTAAAAAGTAGCCTCCTAAACCTTTGATAAATGATCTATTTGACCTTGCATTAAAACATTCCCCT s mm3.chr10 7714803 239 - 130738012 AATGTGGCTCTGTTATGCCTTTAAAATTTCTTCAACCTTCATTTTTTATAGTTTATAAAA--ATGATTTCCACTTTGACT-------------CTACATTCATACTT--AACATTTATATTATGAAATTTAC---------------AAAACCCTGATCTCAGTATTAT-----ATTAATGACCTTGAAGACTAATCTATATAACCAGTTCA-TGAAAAAGCAATCTTTTTCATCACTGA-AAACAGCCTCTTTGCTCTTACATTAAAACATCCCCCT s rn2.chr7 60529453 244 + 139049774 AATGTGGCTCTGTTATGCCTCTAAA-TTTCTTTAACCTTCATTTTT-ATAGTTTATAAAAC-ATTATTTCCATTTTGACT-------------TTACCTTCATACTT--AACATTTATATCAGAAAAGTTAT---------------AAAACCCTGATCTCCACTTTATTTTCTATTAATGACCTTGAAGACTAATCTATATAGCCAGTTCACTAAAAAAGCAATCTTTTTCATCCCTGA-AAATGGCCTCTTTGCTCTTACATTAAAAAATTCCCCT a score=12287.000000 s hg15.chr12_random 340885 107 + 590431 TTTCT-TCATTTCACTTGTGGAAAAAA----------CCCTGAGTCTGAGCAAGAATAAATAATTTTT-CCACAGCAAGTTAGGTAAAGAACCAAGAAGCAGATTCCAATTTTTTTCTT s mm3.chr10 7715183 117 - 130738012 TTTTT-CCATTTTAAAAGTGAAAAAAAAACTGACAAAGTATGCATCTAAGGAAGATTAAACGACTTTTTCCTCCATAAGTTAGGAAGAGAATCAAG-AGTAAATTCCAATTTTCTTTTC s rn2.chr7 60529838 99 + 139049774 TTTTTTCCATTTTAAAGGTGAAAACAA------TGAAGTATGCATCTAAGGAAGAT-------------CCTCAGTGAGTTAGGAAGAGAATCAAG-AGCAAATTCCAATTTTCTTTTC a score=71357.000000 s hg15.chr12_random 341897 650 + 590431 ATGTGGCCTGAGGCACTTCCTATTCCACTAATGCTCCTTTCATCTTTAGTAGTAAGCAGCTATTTTTTTAAGGTGTACAAATATCACATCTTGTTTATCTTGCATTCCAAGGGGCATAG--CACAGTCAATGtttgttgatgcaaccaacattgagcactgctaagtgccagatatggttccaagcagtgaggcgctggggctatctgacacacatgacacagccctgctttcatgaagcttgtcaagtTTAGATATTTCTTCCAAGGAGCATGATTTCTGACTAAGTCTCCAAGGAGCACTTAAACATCTGAGCACATAGAATCTTTTGATGTAGGATATGAAGTCAAGCAAAGGAAACAGTAATTACATCAAGTATTGAAATAATAACCAGTCACCAACTCATCACAGTGGAACATTTCAATTGAATTCTGAAGAATATTCAATATAAATTTAAAATATAGCCTCTAAGAATAATTTATGTCATTTAGTCATTCACAAAAAAGG-AAACTTAACACT-TAACACAAGATATACTATTAATCTgcattgctctacagtgatttttt-ttccatttaatccttgcaacatccctttgagagtaggtgctattactaacctccttttacagatgaggaaaccaaggcaaaaacaga s mm3.chr10 7715300 575 - 130738012 ATGTAGCCTG------------TGTCTCAAGAGATC---------TTAGTCACAGGCAGCTATTTTC----AGTGTACAAACATCCAAGTCTGACGGTCTGGC-TTCCTGTGGGTGTAACACACAGTCGGTGGTTGTCGGTGCAA-CAATGTTGGGCCCTG---------AGGTACAG-------------GAGGCTGGGTC-----AACACGTGGG--------TTGTTCTCA--GAGCTTATCAAGTTCAGGTATGACTCCAGAGAAGGGTGGATCATGACTCAGTCTCCAGAGATCACCTGAGCATTCAAGCACATAAGGCCTTTTAATGTAGCATATGAAGGCAA------CAGAAAGCAATCCCATCATAAATAGAAACAATACCGAGACACATACTCATCATAATAGAAAATTATCATTAAATTCTGATGAATATACA-TATGAGTTTCAAGTAAAACCTCTAAGAATAAATTTTATCATTTATTTTCTCACTAGAAAAAAGCAATTAACACTGTCATACCAG--AAACTACTGGTCTACCATATTCTACAGTGAATTTTTTTCCTACATAATTGTTGCAACGATGCCTTGAGCCCAGAGG----TATAAA---CATTTCACAGATGAGGAAACAGAAGTGAGCCTACA s rn2.chr7 60529937 572 + 139049774 ATGTGGCCTG------------TGTCTCAAGAGGTC---------TTAGTCACAGGCAGCTATTATC----AGTGTACAAACATCAAATTCCGCCTGTCTGAC-TTCCTGTGTGTGTAGCACACAGCTGGTGCTTGTCAGTGCCA-CAATATTGGGCCCTG---------AGACACAG--------------AGGCTGGGTC-----AACACACAGG--------CTGTTCTCA--GAGCTTATCAAGTTCATATGTTACTCCAGAGAAGAGTGGCTTATGACTCAGTCTTCAGGGATTGCCGGAGTATCCGAGCACATAGGGCCCTTTGATGTAGGATATGAAGACAA------CAGGGAGCCATTCCATCATAAACAGAAACGGTACCAAGTCACCAACTCATCACGATAGAAAAACATAATTAAATTCTGAAGAACATGCAATATGAGTTTCAAGTAAAACCTCTAAGAACAAATGTTATCATCTATTCGCTCACTAGGAAAA-GCAGTTAACactgtcacaccag--tcactactggtctaccatactctacagtgaatttct--cccatttaattaatgcaacaatgctttgagcccagagg----tattaa---catttcacagatgaggaaatagaagTGAACCTACA a score=192875.000000 s hg15.chr12_random 342549 1691 + 590431 cttgcccaagatc-acacag----ccagtaaaagcca--agatctaaatccccagtatctcattctggaattcaggcttttaaccagtaggctCTGttacccagtaaatatttgctgagcatcttctaaattccaggcaccgGGGAT--TGAAAAGCTGTTTTCGTTTTATTAATAGGATTATGAACTGAAGGAGAAATCTGATCTGATATAAATCTCGTATGACCTGATTTGCATATGAGCTTATCTGAATCATTTCTTTGGGTGGAAAATGCACTACTACAGTTTCTATAAGTTTCTGAATGGTAATGACAACTTCTTCCTTCTATACCTCCCTGCTATTACAAGAGTGTCTTCTCAGAAGAGAGTAAAGGAGTTTCCAAAAAGAAGAAAAATACTTATTGGACACCCCCTAGCCAAAATTCAGGTAAACATTTTTCTGGGGCATATGCCATATATATCAGGTTTTCTCTTTGGAAATGCCTCTATCCTTCAATAAAACCTCTCTCCTCTCCGC--------------------------------------CATGAAAGTAAAACAAAATAA-----------GGGTGGGTTCTTATCAATTTGAGCCTGAACAATACTTTTATAGTTGCAAACCCAAACCACATTTGACTACAAAGACATGAACATCATTTACAAATAAAATTTTATTCTGCCATTAAGAAATTTGGTTCATCTTCCAAAGTTTTAACATAAGACAGAGAAATGTGTCTTACACtttttaaatatatttttttttGTAGCAATGGCTAGCTAAATAGCAGAGAAACCAGTGTAGGAGTATCTTTAGTGTATTGGAGTCTTAATAGATTATCTTCATCATTAACATATCTGCAACATTTACATTGTGTTAGTAACCTTAGCA---TTTATGTGACT--TTTTTATTTTTTATAATCTAATTTGAATTCTTCCCACACTGCTGTTATTTGGAGAATGCTTTATTCTCATTGTATGTGTGCTTGAGTGTGTGTGCTTCAAAAGACACATACAAGAAAAGATACATCAATATTCTCAGGGTGTTTTTAAACTGAACTCCA-AATTCAAGAGATTTATGGTTTAAGTATGAGTACACAGTACATTTTCAAAAAAGCCAACCTTTCATCAAAATCTGTAATAGGTAAGCAAAGAGAAACAAAATCATCTGGCAACAGCGCTACATTTTTCCAACATTTCCCCTCACTATTTTACATTCCTTTTCCTCCTACAATTTTAAAATCCAAATTTACAGGAAAGCTTTTTGAGAGCACAAAACCACTTCCCAATTATATGCTTGATACTTAAATACCTAACAACTTATCTAATACTTATTTA---AATGAGCCCAATTATGACAATCATTAGCATTTCTCCATTTACTCTTCTCTAATTATAATAGTACAGTACAAAGGTAGAGACGTAACACAAACGATGCTGAGCAGAGCAATGCAAAGTCATTTATTCACAAGAAGGAGGGAAGGGTCTCTTGGCATATTTACTAACGCAGAGTCAAAAA--TGTTTGCCAA--------AGCAGTGTTTGGAGGTGAGTCTGCAATCATTTTTAAGAGAAAGGAAATTTTGCTCCC-----------------------CAAAAGG---AGAGAAAAAGAGAATAGTCAAAAGCAAATTT--CCTCCAGGGGCTCATTCACCTCTGCTGATTTTTTCCTTTCTAATTAG------AAGGCCTTATGCTTGGGCAATCAAAAACACTCAGGCTTAGAGGTAAAAACTGGACAAAGAAGTAGTAGAG s mm3.chr10 7716473 1538 - 130738012 attgcccaaggtctgtacagcaagcaagtgaaacatatgaggtttgaatttttacaacctggttccagaattgaagctcttagccagtagtctctcctgCC---TCAACATTCGCTGAGTATCCTCTACACTTCAGGTACTGTGTACTCTCAAGACTTGTCTCCTT-------GTGGCATTATGAACTGA---AGCGATCTGATGCGATCTGAATCTGCCATAATGGCATAGGACTATACCCTGGTTTGAATCATTGGCTTGGGTGGAAAATGTGCAGCTACAGCTTCTACGCTGCAGAGGGTGGTAATAGCCACACTTTTCGTTCATGCCTCCCTGCTG----------------TCAAAAGAAAGTAAAGACTTGTCCAGACAGTATGAAAATTCTTGCTGGACAACCTC-AAAGAAAGTTCACATAAATAGTGCTCTGGGGCACAGTCTACAAATATCAGGTTTTATCTCTTAAAATGCCTCTGTCCTTCAAGAACACCTTGGTCCTGTGTACATAAAAGGCagagggagagagagaaagaagagagagagagagaaagagagagagagaga-----------gagagaAATCTTGTCAATTTGTTTCTCAATAGTG-TTTCATAGTTGACAAATCAAGTCATATATTAC-AAAAAGAC--CAGAATCATTCACATATCAAAGATAGCTATACCA-----------------------------TTAATATAA------------------------------------------------------------------------------------------------------------------------------------------------------TATGCTGGTAGACTTAGTA---TTTAAATGAATGGTTTTTCTATTTTACCTACTAATTTCAATTCTTCTCACACTACTGTTACTAGGATAATGTTTTATTCTTGTTGCA------------TGCATATGTTTCAAGAGATA----CAAAAAGAACTGCATTGCTATTCCCTGTGTGTTTCTTATCTGAACTCCAGAATTCATGAGATTTATGGGTTAAGTGTGAGTACATAGTACATTTTCAAAACGGCCAACCTTTCATCGAAATCTGTAATAGGTATGCAAAGGAAACCAAACTCCTCTGGCAAGTGCACTACACTTCCCTAATATTTTTCTCTCGTCTTTTATATTCCTTTTCCTCCAACAATCTTCAAATCCAAGTGTGCAAGAAAGCTTTTTGAGACCAGGAAACCACTTCCCAATTATATGCCTAATACCTAAATACCTGACAGCTTATCTAGTGCTTGTTTAAATAATGAACCCAATTATAACAATCATTAGCATTTTTCCATTTGCTTTTCTCTAATTGTA--AGTATAGTACAAAGGTGGAGATGCAATTCAAATGATGCTGAGTGAAGCCATGGGAAGTC------CCGCAAGAGGGGAGAAAGGGC-TTTTGTCTCACTTGCTAATGCTGAGTTGAGAAGGTGTTTACCAAAACCTGAGAGCTGTGTTTGGACATGTGTCGAC-ACAGTTTTCACAGGAAGGGAAATTTTGCTCACTCCCCCCTACCACCACCACCAAAAAAAAAGGCCAGGGGAATAGAGAATGGT-AAGGGAAGGCTTGGGCTCTGCTGGCTTATTCTGTTCTGCTGACTTT-CCCTTACTAATTAGCTTTCTAATTCCTCATGCCCAGGTGATCACAAACACTCACGCCTAAAGG---AAAC------AAGAAATAGTAAAG s rn2.chr7 60531074 1475 + 139049774 cttacccaaggtc-atagagaaattgagtgaaacacatgaggtt-gaattttcacaacctggttctagaattgaggcttctaaccCATAGTCTCTCCTGCC---TCAAAATTCATTGAGTGTCCTCTACAGTTC-GTTACTGGGGAC---------------------------------------CTGA---AGCCGCCTGATAGGACATGAATCTGCCATGATGCCAAATGACTATACTCTGGTTTGAATCATCTGCTTGGGTGGAAAATGTCCGGCGACAGTTTCTACGATGCGAAGAGTGGTGACAGCCGTGATTTCTCTTCATACCTTCCTGCTA----------------TCAAAAGAAAGTAAAGACATGTCCAGACAGTGATAAAATGCTCGCTGGACAACCTC-AAAGAAAGTTCACACCAACAGTGCTCTGGGGCACATTCCACAAATATCAGGTTTTATTTGTTGAAATGGCTCTATCCTCCCAGAATACCTTGGTTCTGTGTACATAAAAGGCagagagagagagagagaga-gagagagagagagagagagagagagagaAACTTTGACAATAAAGAGAGATTTTGTCAATTTGTTTCTCAATAATG-TTTCATAGTTGACCAACCAAATCATATATTAC-AAAAAGACACCAGGATCATTCGCAAATCTAA------------------------------------------TTAAGATAA---------------------------------------------------------------------------------------------------------------------------------------------------CGGTATGCTGGTAGACATAATGAATGTTAAATGAATG-TTTTCCTATTTTACCTACTAACTTCAATTCTTCTCACACTACCGTTACGAGGATAATGTTTTGTTCTTGTTGCA------------CGCGTGTGCTTCAAATGATA--------AAGAAATGCATTGCTACCCCCTGTGTGCTTCTTATCTGAACTCCAGAATTC-TTAGATTTATGGGTTGAGTGTGAGTACATAGTACATTTTCCAAACAGCCAATCTTTCATCAAAATCTGTAATAGGTGTGCAAAGGGAGCCAAACTCCTCTGGCAAGTGCACTACATTCCCCTAATATTTTCCTCTCACCTTCTCTATTCCTTTCCCCCCTACAATCTTCGAATCCAAGTGTACAAGAAAGCTTTTTGAGACCATGAAACCACTTCCCAATTATATGCCTAATACCTAAATACCTGACAGCTTATCTGGTACTTGTTTAAATAATGAGCCCAATTATAACAATCATTAGCATTTTTCCATTTGCTTTTCTCTAATTGTG--AGTATAGCACAAAGGTGGGGATGCAATACAAATGACGCTGAGCTAAGCCATGGGAAGTC------CCGCAAGAGGGGAGAAAGGGC--TTTGTCTCCCTTGCTAATGCAGAGTTGGGAAGGTGTTTACTGAAACTCAAGAGCTGTGTTTGGACGTGTGTCTAC-ACAGTTTTCACAGGAAGGGAAATTTTGCTTCC-----------------------AAAAAAAGCCATAGAAATAGAGAATGGT-AAGGGAAGGCTTGTGCTCCGCTGGCTTATTCTGTTCTGCTGATTTTCCCCTCACTAATTAGCTTTCTAATTCCTCATGCCCGGATGATC----ACACTCATGCCTAAAGG---AGAC------AAGAAGTAGTAAAG a score=18426.000000 s hg15.chr12_random 346969 183 + 590431 TActcagtggaaatgacatttgactgaggtctgattgacaagaaagaatcagaaaggtgagacctgggggacaagcatttgaagcagagagtatagcaaatgcaaagtccttgaagcagggatgagctctgcatgttgaagaaacagaaaaaaggcacactagagtggatcctgggaatgtag s mm3.chr10 7718401 168 - 130738012 TGCTTAGCACaagtgacattggattgagatct--------------aaacaggaaaagaaaagccccagggcaagagttgcaggccaagagaacaacaattgc-aaccacctgaagcagatatgagtcctgcatgttaaagggctggaaagagaaggaggtagggtgaaccctggggatactg s rn2.chr7 60532946 152 + 139049774 TGTTCAGCAGAAGTGACATTGGTTTGAGATCT--------------AACCAGGGAAAGAAAAACCCAAGGGCAAGAGTTTCAGGCCA-----------------AACCACCTGAAGCAGATATGAGTCCTGCAAGTTAAGGGGCTCTAAAGAGGAAAAGGTAGTGTGAATCCTAGGGACATTG a score=130548.000000 s hg15.chr12_random 347152 1567 + 590431 ataagggatgacctacaagggataggtaagatgtggtaggccagggaaggagcctagattttcttctaaggacaatgtaaaa-cttggaggatttttgagcaggagaattaagtgatctaatttgtttgtaaaagatcactttggccactgtgtaggaaatgaatcataagagggcaagagttgaagcagatccattaggagttgttctaacagtagggac-------ggtggtggcttggaatagatgatagcagtcatgacagagaaa----aatggaggcattcaacatatgttttgaaggtaaagccaacaaatcttgctgttttcattataaatagggtaatcatacattccctgtttccctgggacagagctgatttctgtct-gttgtccc-agtgccccgtatggtt-agtatctcttttattctcaacagtatcccagtttgaagaataaatcatatggttgccctagctatgaagaacaaaggaaaaataagaatcaagggtaactccTCA-----GCTTAAGGCAAATTTGTAGTATTGATGTTTCAAAGATGCACTATT----AACAGTATTGTTAATGAAGGAAAA-A--CAACAGAACTCCACAT---------TTGTTTTATTCATGAGTCCTTTTTGTCCATAGTCACTTAACAATCTC----------------------ACATTCCTCTTTCCATCCCAATTCA---GTAGCTATGTAAATGTAC----TAAAACTTCAGAAGAAAAAAAAAAACAAGGCAAATTGAATTAGCCAACTAAAAGACAGTTCAAGTAATTGATCAAGAA---ATACAAGAGAAAAGGAGCAATTCCCAGGAGA-----CAGCAGCACGTACAGGAGTAGCTCTTAGGCTGTCCCCGGTCCTTCTGCTCAGACAGAGACAAAGAACATGGAACCGGGTCTTTGGTCTGCTAACACTGTGGTAGAAGGAGC-TTTATCCTGGATCCTGGACCAGGGAAGATTTTAT---GCTACGAAGAGATAGAA------AAGAAGACTCTCGGGGAAGG--GCCTGGACCACattaaaaaaa--aaaa------aaaaaaaaGACACTGGAAATTAGTTAGAAAAAAGCATCAAAAATGAAGAAGGCTATATGAGAATTCTTCCTTTGAAGGAGGATTGTGGCACAGGAATATCTAGCATCTAAAACCAAGAAACATATTTTTCTATCTGGAAGCTGTTATTTCCTGAGATAACCCTCAAGGAGTGCCAAATACATTATTATT--TTGCATTCTGAAAAAAACCACAGGCTGA--TGTGGCCTGAGAAAATACCTGCTACATATGTTTTtctttctctctctctctctctctctctctatctctGTGTGTGTGTGTGTGTGCACGCGCGCGCACGCATCTGTCTCACATACACACAA--ACA--CACACACAGTTCTTATGATACATTATTGCTTT---CTTCCTTTATCCAAAGAAGTAGCAGCAATGAAAAAAATCCTCTGAAGTTTGCTTTCATAATTCTGAAGTTCAACAAATATCCACAAGGCCAAAATAGAACTTCAGGCCACCCTGAAATAACTGTTAAACGAAATT---AACACCAAAGCTTAGTACTAGAACTATCCACGTTTATTAACATTTGAAAGCAAATTCGTC s mm3.chr10 7718883 1465 - 130738012 ATGCGGGATGACCTACAAGAGACA-GTAAGTTAGTAGAGGTCATGTGAGCAGCGTGAA-TCTCTTGGAGGGGCAatgtgaaatctcagaagatttttgaacaaggagtctaa-------------tttgtaaaaggttatttaggactgtgttta-gaaatgaatcatatcagaacaagcattgaaatggattcattaggggctactgtgaccacagagactagagctgatgggggccaggaatgaatgatccctg------cggagcacagaaaatgaatacctccagcgtgtattttgtggtcaaagccaacgagcccagctgctttcgtgatgtagagagtaa--------TTCCTATTGGCCTGGGTAAAAGCTCATTTCTCCCTCTTTGTTCCATACACTTTGAAAAGTTAAGGGTTTTCTTTATTCTC-GCGGTATCCTGATCTAGACAATAAATCATATAGTTCCCTGAGCTTTGAGGA-TGAAGGGCGGTGGGGGATCAAGGATGATTCTTCATGCTGACCAAATAAAAATGTCTGGTATTGATGTTTACAAGCCTTGCTATTGTTAAACAGTATTAGTGATGAAGAAAAATAATCATTACAACTTTTTATTCCAGATACTAGATTGATTCATCAGTCCTCTCTGTCATGTCTAACTTAGTGTGCATGTGGGGGGTGGGGGGGAGCtgtgtgtgtgtgtgtatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtACACGTCAAAAGCTC-AGGTAGAAAAACAAATAAATCAAATTAAATTGGCCAATGAAGTAATAGTTGAAGTACCTGCTCAAAAATATTTTT----TAAAAAAAGGAATTCTCAGGGAATTCTTCAGCAGGAGGAATACCAGTAACTCATGTGGTGACCAC-AATCTAATGCTCTGACAGACACAAAG-ACATGGA-CAGGATCTTTGATCTTACAAAGCTGTGCGGTAATGCACATATATTCTGGAGCCCTGAGCCTGGAAGGGTTGAC---ACTGAGTAGAAACAAAGATACA-GGAAAGAC--------AAGACTGCTTGGAGCATGGTAAGCAATGAAGGGCTTATCAAGGAAAAAATAGTGGAGACCTG--------------------------GTGCTACACAGAAATTCTTTCTTATGAAGAGGATTAAAACATGGAAATTCCTGG--------------------------ATGCCTAGTAGTGGTCCTTGACTGGTACAA-TCTCA---------------ACTGTCATTCATTGTATGTGGGA-------GTAGCATGACTTGTAACCTGAAGAAATACTTTTCAGACATGAG------------------------------CACCACTGTGTGT---------------------------------TCACATACATACACAGACATGTACACACAT---TTACCATGTGTTAATTCTGTCTCCTTCCCTTACCTAAAGAAGTCATACCAATGAAAAACA---TCTAAAGTTTTTATCT-TAAATCTCAATTTCTGTGAATATCCACAAGGCCAAAACCATGATTTGG---ATCCTG-------TTGTAAAATGATTTCAAAACACCACAACTTAGTAATACAATTATCTCCTTT--TTGAGAGCTGAAAACGACTGTGTT s rn2.chr7 60533421 1410 + 139049774 ATGTGAGATGACCTACAAGAGACA-GTAAATGAttataggccatgtgagcattgttaa-tctctgtgaggaacaatgagaaatctcagaaaatttttgaacaaggagtctaa-------------tttgtaaaaggtta-ttaggaatgtgttta-gaaatgaatcatttcaggacaagcattgaaatggatctattaggggctactgtgaccatagagactagagctgatggatgccaggaatgaatgatcacag------aggagcac----aatgaatccatccagcgtgtattttgtgggcaaagccaacaagCCCAGCTGCTTTAGTGATGCAGACAGCAA--------TTCATGTTGGCCTGGGTAAGAACTCATGTCTCCTTTTTTGTTCC-CAGGCTTTGTAAAGTTAAGAGTTTTCTTTATTCTC-ACAGTATCCTGGTATGGAGAATAAATCATACGGTTGCCTTAGCTTTGAGGATTAAAGGGGAAAAAGAAATCAAGGATGATTCTTCATGTTGACCAAGGAAAAATGTGTGGTATTGATGTTCACAAGCCTTGTTATTGTTAAATAGTATTTCTGATGAAGAAAAA-AATCACTACGACTTTGCATTCCAGATGCTTCATTGATTCAATAGTCCTCTGTGTTATGTCTAACTCGGTGTGCAT----------------------------------------GTATGTATATGTGTGTATGTATGTGCACACGTTGAAAGCT--GTATAGAGAAACAAATAAATCAAATTAAATTGGCCAGTGAAGTAATAGTTGAAGTAGCTGCTCAAAAATAAATTTAGGGAAAAAAGAGGAATTGTCAGTAAA-----CAGCAAGAGGCATAGCAGTAAGTCCTGTGGTGCCCAC--ACCTAATGCTCTGACAGACACAAAG-ACATGGACCAGGATCTTTGATCTAGCAAAGCTGGAGGAGAATGCACATAAATTCTG-------GAGCCTGGAAAGACTGACAGTACTAAGTAGAGGCGAAGATTCAGGGAAAGACATTATGCTAAGACTGCTCAGATCATAGTAAGCAAT--AGAACTTACCAAGAAAAAGAAAGTGGAACACTG--------------------------AGGCTACACAGAAATTCTTCCTTAAGAAGAGGATTAAAACATGGGAATTCCTGG--------------------------ATACCTGGTAGCTTTCCTTGTCTGG--------TCA---------------ACTGTCATTTGTTGTATTTGGGA-------GTAGCAGGACTTGTAACCTGAAGAAATACTTTTCAGACATAAG------------------------------CACCACTGTCCGT---------------------------------TCACATACATGCAC--ACATGCACGCACATTCCTTATCATGTGTTAATCCTTTCTCCTTCCCTTACCTAAAGACGTCAGAGCAGTGAAAAACGCCTTCCAACCTTTTTATGT-----TCTCAGTTTCTATCAATAGTTCCAAGGCCAAAAAT---ATTTGG---ATTCTA-------TTTTAAAATAATTTCAAAACACCTCAACTTAATAATACAAATATCTCCTTT--TCAATAGTTGAAAATGACTGTGTT a score=429716.000000 s hg15.chr12_random 348721 4079 + 590431 AATTTACACCTCTTGTTACACAATGAACCGATATACTTTTTTAAAGTGATGGGTAATTGACTGGGGACTGTCAGTGAATGTTATCTGGGTAAAGAAGAAAATAGATTAGTTGTGTTTCAAAGG--GAATTACTGTATGTCACCTGCTACCCATAATTTTCAGGCTATTTTAAGCCTTGGTTTTGTGA-CCATCTACATACTATGATTTCGAATATTACCCTAAATAGAAGAACTCTAGTAGTGCCCAGGGACTCAAAGCTGATTTTTTTTAAATTTCAGTAATTGTTTTTTGTCAGTTGAT------------AGCCC--TAGGATATGAAGAGCACCAGGACTTAACTAAAGTCTAAATTCAGCTCTAACATAAagaaagagtgagagaaagggagcgagcgagggagagaaaggatgggggagacagagagagatacagaaagaATACTTTTAGGCCAGCCAAATCTATATTTATGGCAACCTGCCCCAATATTTTAAATACATATGATTCATGGAAG------CATCTGAATGATCTTTTTAAAACCACAGAGCTGAAACAAGTAATTGCTAAAGAGTCATTGGAT---TAGAAGGCTAGGTGAAGCCCACTATTTCTTCAGGTTTTCATGATCAACAGCTGCCCCAAACATACTTGATTCCACTTTTGCTTATGCAAATATCATTCATCTTGCCACCAGCATTTGCTTTAGTCCCTTAACAGAGTTCTTTAATCGTAGTTGTTTCCACAGATCCATCAAATCGCATTCATTATTGTATCCTGGACTCTAAATTAAGCTGAATAACACTGAGATGTTATCTTTCACGTGTTATGTGCTACCCAAATATTATCAATTCTCATAAGACTGCCTGAATATTGTGAGCCACACATAGCTACCTCCAGGCCAATGCAGTGATTGCTCATTTTACCTAACATTAGTCTCCCTTGGTTTTAATTCACGTTCAGATCTTGGCTTTTCCAGTGGATAAAATTTCAACATGATTTT----AAAGTA---GTCTCCAGCCTCTAGTCCAGCAGAGTTAAACTCTTGGGGACTTT-CTTCAAGAATTTCAATTAATGGACTGAATTGAAAAAGCTTGTCCTATAAACAAGTGATGAGCTATATAGGAAATTTGACTCTGAACAAAATGCCTTGGCAGTCATTTACACATCCATAATCTAATAGATGATTTTCAAACTGGACCACATATCAAAATTATACTGTAAAATTAAAGA-AAAATGTTTCTACTTTAGAAAAATAGGAGCAT-TTTTTACTGTATGAAGAATGGTGAAGTTTCTAAACAGAACAGTTGGCATCACTTTGAGTAGTCTGCTGA-TTTGGAAAGAGAAAGAG--TGCCTCAAGACTGTGAATAAGCCATTTTCCTTTGGCAATCAAGA---AATCGTTGGGGACAGAAATAGAGTCACTACCAATCTTAGCACCAGAGCCTCAAGGTCAACTGAAGAACTAGACTGTTCTCTACCTCTTT-CCCACAATCATGTGATTATTCCCTTTTTGTTCTTGCTGAACATGACAAATATTTTTTCTAAAGAATATATAAACCCTATTGCAGCATTCATTTTCCATGG---AAAATATTCT--GTTAGAGTAAGAAGAATGAACAAAAGTATCTCTCTTCTTTGGTTGTTCAGTCCTTTCCAGAAATCTGCCACTTCTGCCAACACATTTCATAAATCC----AAGGATAACTAGTTTGGGCCAAAATTATGTTTTCAATAATTAAGATAGAATGATGCTGGCAAAGCTGAGT----TTTTACCTCATATATACAGATACTTATGCCTATTTTCCATTGTTTTGCCACTTTCAGAGAATTTGAACAA----AAGATTTGAATATCCAGACACATTATATAT-CAAAATTAAt-caacaggtatttgttgagtgcttcatatgtagcaagcattttgctagAAACAGGTACCTCCTTTTCTTATCTCAGGTGCCAAGACAAAAAAGTTGGTTTGAAGTCCCAGTCCAAGTTC-CAGCTT--TTCATCTAAGTAGTTGTCTGCAGCCATTCCAGTCCACAGTGAATTTTTTCTTTCTCTAAGCAACTATAGCATTTATAT-CTGTATTTCTTATTTTAATTCAAGGCAGTGAATTCCATTTGATGGAATTGATGATGTTAAATAACATCATTGCAGAGCTTGGCACATGCTTTGTATGTAGTAGATATGTATCTACTGTATTAAATACTGTTAAAATTAAGTATTAAAAATGAATATTTGCTTCCCTCTTTAAGATAATGTCTATACTTA----AATACATGGAACTC-ACTATGTAACATATCTCTAGGTACAGCTCTTA-------------------------------------------------------------------------------TATTTTTATACCATGCACT-----------------------------TTACAATCTTGTTATCACTAGAGGGGTGAAGAAGAGGAAG-GTCACCAAACTACCCATGAAGCTGAGGTGGTAGCAGCTAGAACATCACAACTGATAGGTCAGTTGATACTCTGAGCCAGTGATTCCAATCTCATACAACAATTTGCCATTTTTATCATTACCCATACCT-------CCAATGCAATCATCTGAAGGTCGTAATT-AACCGCCACATCCCCTAGGTGATCCCAGACCCACGATAG-TCATTCAGTGATTTGTCAAACTCAAGGTAAAGTGCAAGCTCAATCACAATACTGTTTCATAACTGTCTCATATCTGCTCTAGGAAAGATATTTTGAAACACTTTTTGAAGATTTGCTATTAAG--TGTTTTTAATAAGCTTCCAAAGAAATGTAAAGCATTCTAATTGCTGTCGACAGAGTATCAAGTTGAGTGACATATTCTTTTCAGCTAGTCATTCTTTGGTGTGACACTGAACAATAATACTGAACCATTTGAACATTTAAAATTATTTTTAAAAGAATAACTAGTAcccactgttaaatctaccaacctgttggcatcggtgcccaaaattctaccttctttc---ttgataatata-----gataaccagtctgtgctcctagttaagattaacccaccatttgtacacttgattccatccccatgtacctactcaagagcatgggaaccagctcttctccactggctctta-caggaacagattgtcctattaaaccactatataaaaacataaatatgctgtaatttctcttaaataaaaactagtttcttcaccccactccccctgtaacttcatcttctattaccccatttctcttcaactatttccaccaaacctccttgaaggagttatttaaattcctg-tctccaatttctagcctttcattctctctaatcagggctttgctcctgccaa--aaccattcctatcagggtcacaaatgaccctccagtttgataaatcccacagtcagttcttagccttcatattccttgacatgaataatctaaattctttgaaatgtcatcctcatttgacttctagaataccaaactcatctggttttcctttctactccttcttagcctcctttactggttcctgctctcctctccaacttctaataaccccaatgtctagaaaaggatttgaaatatggtatatgtccaatatgtattttgtgaataagtgaatGGATAAATCAACCTCATTAACAAACAC--------CTACTATAGTAGATTAGAAGCTGGCTCCAAGGTCAATGATATGATTTTTTTAACATATCCATCTGCAAAGGAAATATTCTATCAAGGAAAGAAGGGCATAATGTTTAAACTTCTCTAGACAGTTTCAGAGATATGGGCCCTGCAAATTATCTTCTCCCAAATCCCATATAATTTTTAAACCATTACAATTAAGTGAATACTCGGCACTTACCATGGTCAGCCATCAGTTTCCAATCAAATTTACATATCAGCGAAGGCTTTATTTGATATAGGAAATTTGCTTTTTAGTCCATTCGCATCTTCTTTATAATC-AATACATC-AGTCTATTTATG-GATTTTTATAGGATTTGGTATTCAACTTTATTATTTTAGACTATTACAGAGAACTTGGCTGTTATAAATTTTCTTTTACAATGCTTTATTGCTGAATCTCTGATTTGTTTGCTTTTGAGTCATTGGTTAGGAGCACAAACTTGCAACAATATTATTCTTTTAGGAAAATATTAATCTGACATATAGAACCATTTTCAGGAATGCATTGTGA s mm3.chr10 7722366 3855 - 130738012 AATCAAAGCCTCTTGCAGTACAATGAGAACATCTATATTTTGTAAATACTTGATAATTGACTGGGGAGGGTCAATGAATGTGATCTGAACAGAGGAGTGAGTAGATCAGCTGTGTTTCAACAGAGACGCTGCCCTGC-TTACCTGCCTGCCCTCACTTCTACAGTA-TCTAAGCCTTGACTTTGAGAGCCATCCATGCACTGTGGTTTCCAAAACTGCCCTAAACGGAAGAACTACAGCAGTGCCTCAAGAGTCGATGCTGATTTTT----AATTTCAGTAATTG-GTTTTGCCAGTTGTTGATTTAGTGGTGAGCCAAGCAGGATATGAAAAGCAGCAGGACTTGACTGGAGTCTAAATTCAGCTCT------------------GAGAGGGGG-------GAGGGGAAAGAATGCT-----------------------------TCCCTTCAGGCCACCTGAGTCTG----TTTGTTAACTCGGTCTGGTCATTTAAACATAGACATTTCATAGAAGACATTTCATAGAAGTGATC--TTCGAAACCACAACGCTAAAGAAAAGAATTTCT--AGCATGATTGGATTGGTGGGGAGTTAGGTAAAACTTACTATTTTT--ATGTTTTTTGGATCAATGGCTGCTAGTAACTT-----ATCCGACTTTTGTCCATGC-GATATCATCCATCTTACCACCC--------------TCCTTTGCTTAATTCTTTAATCATGGGAACCTGCACACATTCATCAAACCTCACCC--TATTGCAGCTGGTATTCTCAACTCATCTGGATGACATTTAGGTGGCATGTTCTACCAGTGATAGGCCACCCA---ATTATCAGTTATCACAAGACTGCTTGA--ATTGTGATCCATACATACCTACCTTCAGGCCATTGCAATGATTGCTCCTATTACTACACATTAGCTCCCCTTGGTTTCAATTCACCTTCAA-----GGATTTTCCAATGAATTAAACT----CACGATGTTTTTTAAAATA---GTTT----CTTTTAGTCCACTAGGGTTAAACTCTCAGGGACTTT-CTTCAAGAACTTCACTTAATGCACAGAATTGGAAAA-CTGTTCCTACAAATAAACGACACGCTATATAGGAAATTGAGCTTTGAGCAAATTCTCCTGAGAGTCATTTACACATCCATAATCTAATAGA-AAATTTCAAGCTGTACCACATATCAAAATTATACTGCAAAATCAAAGATAATGTGTTTCGACTCTTTAAAAATAGAAGCGTGCTTTTATGGTCT---GAATAGTGAGTTTTCTAAACAAAACAGTTGGCTCCGCTTTGAGCAGTCTGCTGA-TTTGGAAAGAAAAAGAGCTTGCCT-AAGACTGTG----AGGTGTTTTCCTTTGGCAGTAGAGAAGGAATAGCTGGGAATTAAAAT--AGTCACTACCAGGTGTAGTGATGGAGCCCCTGGGTCAGCTGAAGAGCCGGTCTGTTTTGCCTCTCTTTGC---------TAGGGTTGTT-------------------------CAAGTCTATTTTCTGAAGAGTTTATAACCTCCATGCCAGCATCCTCTGACTGAGG---AACGTGTTTCTGGGTAGATGAAGATGAATAAGTAAATCCATCTCTC--CTTTGGATATTCAACCTCTTCTAGAAAACTACTAAGTGTATTAGAATTGCTCATAGATCTTTCAGAAGGGAGTTACTTTGGACCAAAATGAGATTTCCGAAAATTAAGACTGTTCGGTGCTGACAAAGCTGGGTTATTTTTAAAAACACACGTCTACACATTCAAAACTGTTATTTATTAGCTTGCCATAGTCAAGCAATTTAAATGT--------TTGCAAAAAT--------TTTTATGACAAAAATTGATGGAATGAGTATCC-CTAAGTGTCTGACGCGTCCTAAGCAGCTCACTCAGGATGGGTGTACCATTTTCTCACTGTGGGCGCTAAGACCAATCC-TTGCCTTGAAGTCTAAGCCTGAGCTC-CACTGTCTTTCCACCAAA--AGGATCTGCAAGAGTTTCAGTCCGTGGTGAATTATTTC--TCTCCAAGCAATCAAA-CATCTTTATGCTGATTTTTCTATTTTAATTCAAGGCAGTGAATTCTAATTGGTA-------------TTAATATCATCTTCACAGAGGTTGGCACAATTTTTAAACACAGTAGATAGA----TACTGTATTGAATA----GGAAATT-----------ATTCATATTTGCCTCCCTTTTTAACATAGTTTGTATGCTAACACCAATCCATAAAAATCAATTACATGATATCTCGCCAGCTATAGGTCTGAATTTGGGTTTTCAGCTTTGTTTGCTGGCGTGCTTACTTGCTTGTGTTGTGTGTCAAGCTCAGGGCCTAAGCCCACTC--TACCTCTGAGCCATATCCTGAACTCAGGCTTGATACATTCAATAAAACTTATAACGTCTTTGTAACAAAGACAGCAATAAAGGAGAAGAGTTATTAAACCACCCGGGACACAGATACCG----AGATGGAACTGTAT------------------CACTCTGACCCAGTATTTCAGGTCCAGAATGGCTA-TTATTTTTTTCACCATTGACTGTTTTTCGAGTTGCCAATACCATAATCTGAAGGTGTTATTTGAACAATTATA---CCCAGATGACCCCTAGCCCTTATCAATTCATTCAATAATTTGTCAAACCAAGGGTAAAGAGCGATTTCAATCACAACATTGTCAC-CGTCCATCTCAAACCGACTCTAGCA---AGATTTCAAAGCGATTGCCTAAGATTTGCTACTAAGTTTTTTTTTAATGAGTTTCCAAAGAGTAGTAAAGCATGCTAATGACTGCTGACAGAGTATCACATGAAGTGACAGATTGCTGTCAGCTCATCCTTATTTGGTGTGATACTGAACAATAACACTGAAGCCTTTGAACATTTAAAATTATTTTTAAAAGGACAAAGGGtacccatcg----atttg------tctctgcac-----ccttatgtgctatgttctttc---tggttaacatggagatgatacactgtctgagttcctgactagaaccaactc----------caagtgttgtcatctactcatgcctac-aaggatcat-ttatccaa-tcttctccatc--ctcatatcagaaaca----gtacccctaggacatgacacaaacatgc-aatatgctatgatttctctcaacaaataaataagttt---------cccccaccaaaacttcatcttctaacaccc--tttgtcttt-gctgtcttcaggaaatctcttaaaagttg-tagttgagctcccattgttctatttctaatctcacatt---tccaatcagacattt--ctctacccgtcaacc---------aaggccacaaataa-cttactgtcttataaaccccatggtcagctcttagctttcatattactggacACAAATTATCCAAA---CGTGAAGCTTCCTCCTCCCTTGACTT--------------------------TCTGCCTATTCTACCTCTGTCTCC-CTACTCACTCTGGAGCTCCACCCAAGCTTGCAACTGCCCACTTATC------------TAGAACACTGTACTCCTATAATATTGATTT--------ATTCAACAAATGTATTGACCTGATTAATGAATGCAGGAAGATCTAGTAAGATAAATTAGGAGATGGCTCTCGGGCCAGTAGTATAATTTTCTT-TTGTGGCTGCCCACAAAATGAAC-----------------AAGGCAGTAT-----AATTCCTCTATATCTTTTAAGAGACCAGAGCCTTAGGAATCATCTCCCTTAAAATCTCATATAGTTTTAGAACCATTGTAA-TACACGAATAATTAT---------TTGTCAAATATTAGCTTCCAGTCAAATTTAC----CAATGGGGGTTGTATTTATTAAATAAAAGCCA-----TGATTTATCAATATTCTCTTTGTAATCAAATATGTAGAGTATAATGATGCAATTATTGTTGGCACTGCTGTACAACTTTGTTCTTTTGGGCTAATACTG----TTT--CTCATAGCATATTTCT-------TGCTTGTTT------CCTCTGGCTCATTGGATTTTACATC--GTTTTGGAAGCAGAAC----CACCCATATTACACCTCTAGGGAAATACTATCTGCTTTTATATAACCATTTCCAAGACTGTGTTGTGG s rn2.chr7 60534833 3759 + 139049774 AATCAAAGCCCCTTGTGATACAATGAGATCATCTATGTCTCGTAAATGATTGGTAATTGACTGGGGATGGTCAGTGGATGTGAGCG---------------------AGCTGTGTTTCAATGGATGAGCTGCCCTAC-TCACCTGCTACCCCTAATGTCTACAGTA-TTTAAGCCTtggctttgagaaccatccatgtactgtgattcccaaTAGTTCCCGAAACAGAAGAACCATAGCAGCGCCCAAAGAGTCGATGCTGATTTTT----AATTTCAGTAATTG-GCTTTGCCAGTTGTTGATTTAATGGTGAGCCAGGCAGGATATGAAAAGCAGCAGGACTTGACCGGAGTCTAAATTCAGTTTT------------------GAGAGAGG---------AGGGGAGAAAATGCT-----------------------------TCCCTGCAGGCCGACCGAGTCTG----TTCGTTAACTTGGTCTGATCATTTAAAAACAGCTATTTCACAGAAGACA------ATAAATGATC--TTCGAAACTGAAAAGCTAAAGAAAAGAATTCCT--AGCGTGATTGGATCGGTGGGGAGTTAGGTAAAACTCACCATTTTT-CAAGTTTTTGAGATCAGCAGCTGCTAGTAATAC-----GACCAGCTTTTGTTCATGC-AACATCGTCCATC--GCTTTAC--------------TCCCTAACAGAATTCATTAATCACGGGAATCCGCACACATTCGCCAAACCTCACCC--TACTGCAGCTGGTATTCTCAACTGATCTAGA---CATTTAGATGGCCTGTTCTA-------TAGGCCTCCTA---ATTAT--GTTATCACGTGACTTCTGGA--ATCATGGTCCATACACACCTACCCTCAGGCCATAGCGGTGACGGCTCATCTTACTACACATTACTTCC--TTGGTTTCAATTCAACTTCAA-----GTGTTTCCCAATGAATTAAATT----CAAGATTTTTTAAAAAATAATAGTTT----CCTTTAGTCTACTAGGGTTCAACTCTCAGGGACTTTTCTTCAAGAACTTCACTTAATGGACGGAATTGGAAAA-CTGTTCCTACAAATAAACGACACGCTATATAGGAAATTGAGCTTTGAGCAAATTCTCCTGAGAGTCATTTACACATCCATAATCTAATAGA-AAATTTCAAGCTGCACCACATATCAAAATTATACTGCAAAATCAAAGATAATGTGTTTCGACTCTTTAAAAATAGAAGCGTGCTTTTATGGTCT---GAATAGTGAGTTTTCTAAACAAAACAGTTGGCTTCGCTTTGAGCAGTCTGCTGATTTTGGAAAGAAAAAGAGCTTGCCT-AAGACCCTG----AGGTGTTTTCCTTTGGCAACGGAGAAGCAATAGCTGGGAATTAAAAT--AGTCACTACCAGGTGTAGTGATGGAGCCCCTGGGTCAGCTGAAAAACC-GTCTATTTTTCCTCTCTTC-C---------TAGGGTTGTT-------------------------TAAGTCTCTTCTCTGAAGAGTTTATACCCTCCATGCCAGCATTCTTTTTCTGAGGAAAAAAGTATTCCTGGGTAGATCAAGATGAATGAGTAAATCCATCTTTC--CTTTGCATATTCATCCCTTTCTAGAAAACTACTACACACATTAGAACTGCTCATGGGTCTTTCAGAAGGTAGCTACTTTGGACC-----GAGATTTCTAATAATTAAAACTGTTCAGTGCTGACAAAGCCAGTTTATCTTTAAAAACACACATCTACCTATTTGTAGGTGTTA-TTATTAGATTGCCACATTCAGATGATTTAAATATTTAAATCATTGCAAAAA---------ATGTATGA-GAAAATTGACCCAGCGAGTAGCC-CTGGGTGTCTGAGGCGTCTCAGGCGGTTTACTCTGAAAGGGTGTATTAGTTTCTCATCTTGGGTACCGAGACGAAGTC-ATGCCTTGAAGTCTAAGCCTGTGCTCTCACTAT-------CCAAG--AGTACCTGCAA------------GTGGGGAATTATTTC--TCTCCAAGCAACCATA-CATCTTTATGCTGGTTTTTCTACTTTAACTCAAGGCAGTGAATTCTAATTGGTA-------------TTAATATCATTTTTATAGAGGTTGACACAATTTCTAAACATAGTAGATACA----TACTGTATGGAATA----TGAAATT-----------ATTAATATATGACTCCCTCTTTAACATAGTTTGCATGCTTACATCAATCCATAAAAATCAATTACATAATATCTCTCCAGCTATGGGTCTTACTTTGGGTTTTCAGTTT------------TGCCTGCCTGCTTTTGCTATGTGTCAAGCTCAGAGCCCAAGCCAACTCTGTACCTCTGAGCCATATCCTGAACCCAGGCCTTACATACTCAATAAAACTTATAACCTCTTTGTAACAAAGACAGCAATAAAGGAGAAGAGTTATTAAACCATCTGTGACACAGATACTG----AGGTGGATCTGCAC------------------CACTCTGACCCAGTATTTCAGGTCCTGAATGGTTA-----TTTTGTCACCATTGACTGTCTCTCTCATTACCAATGCCATAATCTGAAGGTGTTATTTGAACAATTATA---CCCAGATGACCCCTAACCCTTATCAATTCATTCAATAATTTGTCAAACCAAGGGTAACAGGCAATCTCAATCACAACACTGTCAC-TATCTACCTCAGGCCGACTCTAGCAAGGAGATTTCAAAGCCCTTTTCCAAGATTTGCTATTG----TTTTTTAAGTGAATTTTCAAAGAGTATTAAGGCACTCTAGTGACTGTGGATGGAGTATCACATTGAGTGACAGATGGCTTTCGGCTCGTCCTTATTTGGTCTGATACTGAACAATAATACCGATGCCTTTGAACATTTAAGGTTATTTTTAAAAGGACAACTGGtacccacct----atttg------tgtctgcac-----ccttatgtgctatgttcttttctgtggttagcaca-----gataca----ctgagtttctgactagaaccaactc----------caa--gttttcatccactcatgcctat-caggatcat-ttattca-------tacatc--ctcatatcagaaacg----gtacccctaggacattacacaaacatgc-aatatgctataatttctatcaacaaataaataagttt---------ctcccaccaaaacttcatctcctaacatcc--tttgtcttc-actctctcctggaaacctctttaaagggg-gggttaagttccca-tgttctatttctagtctcacatt---ttgaatcaggccttt--ccctgccagtcaaccactcctactaaggccacaaataa-cttcctgttttataaatcccatggtcagctcttacctttcatattacgtgacacaaattatccaaa---cttgaagcttcttcctcccttgactt----------------------------tgtctattttgcctcagtctcc-ttacacattcttgagctcctcctTAGCTTGCAAGTGTCCAAATATC------------TGAAACATTGTACTCCTATAATATGGATTT--------ATTCAACAGATGAGTCGACCTCATTAACAAATGCAGGAAGATCTATTAAGATAAATTAGGAAGTGGCTCTCAGGCCAGTACTATATTTTCCTT-ATGTAGCTGCCCACAGAATGAAC-----------------AAGGCAGGAT-----AATTCCTTTATATCTTTTAAGAGACACAACCCTTAGAAATCATCTCCTTTAAAATCTCACATAATTTTAGAACCACTGTAA-TACGCAAA----------------TTATCAAATATTAGCTTCCAGTCAAATTTAT----CAATGGAGGTTTCATTTATTAAATAAAAGCCA-----TGGCTCATCAATATCCTCTTTGTAATCAAATACCTAGAGTATAATTGTGCAAACA---TTGGTACTGCTGTACAGCTTTGCTCGTTTGGGCTAATACAG----CTT--CTCTTAGCACATTTCT-------TACCTTCTT------CTTCTGACACA------TTTATATC--TGGTTGGAAGCATAGC----CGCCCAGATGACACCGCTAGGAAAATACTATCTGCTTTTCT-TCATCATTTCCAAGGNTGTGTTGTGG a score=2899.000000 s hg15.chr12_random 352800 137 + 590431 TGGAA----AGCAA---------TTTACAAGTTTTTATTGTAAGAGACTCT-GTGTACATTCTGTGGGTTTATCAAGGTAATATTAATGATGGAAATGAAGATTTCAAATACATGTAATTAAAATAATAAATGCTTAATAGCAAGGTGCAG s mm3.chr10 7726221 136 - 130738012 TAGAAAAACAGTAATTGGATGTGTTTACATGGTTTTATCGTAAGCTATTCTAGTACAGATTCATTGAATTT-TCCAGGTAGTATGAATAACAGAATCAAAGTTTTTAGATACA-------ATAATGATAAATG-------GCAATATGAAG a score=84559.000000 s hg15.chr12_random 352937 792 + 590431 CACAGAC-AAAATCTATTGTATATTGGCATTGCTAGAAGTGGCTTTTTAACAAATAGAATTTACACATTCAAATGAATTTTCATTTCAAACCGGTTACATATCTTAAAAACAAAGAATCAGCAAGACCCCCTGGGGAAGTCTGTAAATTTTAGCTATAAAAATAATAACCact--agaatttatacatccaaacaggtattgttcccctcacagtgataacct-tgcaaagctgccccacattccagtgttggtgtcatatgctcagaacatttttggaactccatctt------caaaaacagcaccaaag-cctacattgcactctttattgccctcagagggccatgtgttcatactttgagggtgtattcttttaaaaaacaagacaaaacaaaattattcagtgttaagaccaacaaatcagat-aatgataaaattgagtaataccatcatgaatccaaaatgagatttaactacaaaataaaaagtcaaatttccttgtaaaagattgcaaatctgctctgaaggcaagtcccaaagaggaggagatttaagtatg-tattgagcaactgaagcaaggttaaaatgaatgtagcctccag-ggtggctactgtgaagggtaccaatcactttggttttaaattcagaaaactttgtttt------aaaaCTTCTTTTCGGTGGATATTTTGTAAC------------------------------------------------TTAGGTACCTAAGACACTAGAAGCTAATGTTCCCCATTCTTCTCAGGGTTATGCTTCTCAACTTCAAAAATA--------------------------------------------------------------------------------------------------------------------TCTGTATAATTGACTAAGGTAGCTCTTAGCTTTTT-ATT s mm3.chr10 7726357 807 - 130738012 GAAAAATTAAAATAGGTTGTATATCATGATTATTAACTGTTTCCTTTTACTTGAGAGAATTTACCTGTTCAGATGAAGTCCAACTTCAAGCTCACTATGCATTTGGAAAGTAAAGAATCAACAAGATGCCCTCGGGGGGTGGGCGCGTCTGTGCCTCATGAGTAATAACCCct--agaatatatacactcaaaaa---tatagtcccctcaaagtgaccacct-agcaagactgtgccacgccccagcacctattccatactcacagattatttttggacatttgtctaaaacttaaaagataccaccaaaaacctttat--cacgctctattttctccagagagctgcatgttcatactttgtggatggaattctttaaagaac---------caaaattattcagtgtcaagttcaataaatcaggtgcatgataaagttggctaataccatcttgagtcgaaaatgagatttaacggcaaaataaagaggcagatgtccttgt-aaagaccgtcaagcagctctgaaggcaaagccaagggagcaggggcttcaaagttattcctgagcaactgcagc-aggctgggatcta-gcagcctctagcagtaactgctgtgaaggttttcaatcaccttgattataaattcAGAAAACTTCATCCCT-AAAAAAGAGTCCTCCCCAGTGGATACTTCGTGTC--------------------------------------------------------CTTAGACAGGGTGAGCCACT-TTCTCCATCCTTGTCAGGGTGATGCTTTCAAGCTTTAAAAGAAAAA--------------------------------------------------------------------------------------------AGAGAGAGAGAGACAGAGCCTGCTGCATCATTGACTAGGGTAGCTCTTAACTCTTTTATT s rn2.chr7 60538644 908 + 139049774 GAAAAACGAAAATAGAT-GTATATCATAATCATTAACTCTTTT---------------ATTTACATGTTCAGATGAAGTCCAGCTTTACGCTCACTGTGAATTTGAGAAGCAAAGAATCAATAAGACGCCCTTAAGAG---------TCTGTACCTCATGGGTAAGACCCCCCccagaatgtatatactcagataggttttagtcccttcaaagtgactaccttggcaagactgtacaacaccccagtatcaatgccatatgcacagatcatttttggatatttgtcttaaaa--acaaaattccatcaaaa-ccttcat--catgctctattttctccagagag-ggcatgttcatactttgcggatggaattctttaaagatc---------caaaattattcagtgtcaagttcaataaatcaggtgaatgataa---------------------gtctaaaattctatataactgcaaaataaagaggcaggtgtccttgt-aaagactgctaagcagctctgaaggcaaatccagacgagcaggagcattaaaggtgttcctgagaaactgctgc-agaccgggatcta-gcagcctctagcagtaactgctgtgaaggtcttcaatcaccttgattataaattcaggAAACTTCATCCTTTAAAAAAAAGTCCTCCCCCGTGGATACTTTGTGTCTTCAGACAGGATGAGGACACTTTGTATCCTTAGACAGGATGAGGATACTTTGTATCCTCAGACAGGATGAGCCACT-TTCTCCATCCTTTTCAGGGTTATGTTTTCAAGCTCTgagagagagagagagagagagagagagggagagagagagagagagagagagagagagagaaagagagagagaggagagagagagagagagagagagagagagagagagagagagagagag---aCTGAATCACTGACTGGGGTAGCTCTTAATTCTTT-ATT a score=45319.000000 s hg15.chr12_random 354031 413 + 590431 aagaaataattttaGAAAGAAATCAGTTTACCTTTTAAAATTTTAAATGGAT--------AATAACAGAAAAAATA-TAAACCTTAATATCATTCCAAAATTC-------CTTAATTTACAGATTTGTTTATTTATTTTGGCTAACattgaatgctta-ctctatttcagatac--ttctaaacacattaagcatattcattcattccatctttataagaaa--cttgtaagatacattctattactagcttcattttacacataaaaaaaatgaagtcagagaaattaagagactaccaaaaatcacat--------------agagcca--gaacaggaacacaggcaattcaatccagagctgttctttgaactactgcactCCATT-CTGAGAATATTCACCAAATTATCAAGACATATTAGAA-AAATATATATTACAAAGATAATA s mm3.chr10 7727164 434 - 130738012 AAGAAATAATTTCAGAAAGAGATCAGTTTACATTTAAATTTTCCAAATATATTTATAACAAAGGACACAGCAAATAGTGAATCTTAATTATGAT-CAGGCTTGGTTTTGATTTGAATCAC--ATCTGTGTA-----CTTGGTGAAtactgagtgcttaattctcttccagagactgtcttaaacacactgtgcacaggaagtcactctatccttatttaaaa-cctcgaaagataca----attacgagcttcactttataagtgaaggaggtggaatcagagaAACTCGGAGATGATGAAAATTCACAGGGATTGATAGGTA-AGAGCTATGTGACAAGACCTTGTGAAACTCGGTCCAGAATTG-GCTCTGAGCTACCGTGTGGCACTGCTTAAAGCACTGGCCAGTTGACCAAACC--AGTGGGA-AAATGTCCACCTTAAAGTTAATA s rn2.chr7 60539552 426 + 139049774 AAGAAATAATTTCAGAACAAAATCAGTTTACATTTAAAATGTCCAAATACGTTTATAACGAAGGACAGAACAAATAATAAATCTTCATTTTAAT-CAGAATTG---------TGGATCA---ATCCTTTTA-----CTTGGTGAACactgaatgctta-ttcccttccagatactgtcttaaacacactgtgcataggaagtcactctatccttatttaaaaaccttgaaaaatgca----atcgaaagctttgctttacaattgaaggaggtggaatcagagaaactcagagatggccaaaattcacagaacttggtcggtacagagctatgtgacaagacctcagggaactcagtccagaactg-gatctgagctactgtgTGGCACAACTTAGAACTCTGGCCAGGTGACCAGACT--AGCAGGAGAAATGTCTGCCTTAAAGTTAAAA a score=11948.000000 s hg15.chr12_random 354830 714 + 590431 cttaagggatagacagtcgattaacaattaaacaaa-taaatACGTGAGTGTTATTCTAATCATGAGAAAAATAAACATGACACTGTGATAGAGAATAAAGTGGGTGGTTAGGAAAGGT----CTAAAAGAACATGGTCAGGTCCAGTGCACTGAAATTCTGTAAGGCCAGATGGCATAGCAATGAATAACATTAAGAAATTGCATAGCAAGAAATTA--------GTATCTATATCTGAGTGGCACAGCTCAAACAAATTTCATTTAGTAAGGCAGACTCCGTGAGTTGATATGTCCAATTCCCATACT---------------------------------------------------AACCTATAAATGGTTAAAAAGCAAAAGGCCCTGGTTACCTAAAGGATCTCTCACCTGATTTTAGTAAACTTTGAGTGAGCCTCTGAAAAAC--AGGTGGTTCCAGGAATCTGCATTCAACCCTACCATAATATTGTTAGTCTCATGTGTAGGCTTGCATTGCTTATTTTCT------GGCTTCAATCATACAAAGGAAAACTAATATTGCTCAGAGGTAAAGAACGCTTTTTGCCAGTCCTCAAGTTTGAACCAGTCTTTGTGAACTGTCTTTCCCCAGAAAGCCTCTGTGAGCATTTAATATTTAAACTGAAATCTAAAGGATGAGAAGGAGCCAGTTTTGCAGAACTTCAGGAAAAAGAATGCTACAGGTCTGGTTCAAAAAGCAAACTTTTACAAAGACTGATATTAGCAAAACATCTCTCT s mm3.chr10 7729511 739 - 130738012 CTTATGGGAAAGACAGCCAATTAGCAACAAAACAAAATAATTACAT-----TTTTTCTAATCATGCAGAGAATAAGTGTGGCCCC----TAGAAA-----------TGTCTAGAATGATGATGCCGAGTGTATATACTAAAATCCTGT-TACTAAAACCCTGTAAAGTCAGAGGGTCCAGGGACCAATAAGAGATAGAAAA-GTACAGAGAGCAATTGTGAATGACATTTCCACATCTGAGTGATGCAGGACATATGAGATTT-TTTCATACGACAGACCTCACGAGTTGATATGCCCAGTTGCCACACTGGCCAAaaaaacaaaaacaaaacaaaacaaaacaaaaacaaacaaaaaaaaaacaaaaaAACAGCCAAAGAACAAAGAACCCTCATCTCTCAGGAG---TCCCTCTTGGGTCTCCGACACTTTATGTGAGCCTCTGAAAAACATAAGAGGTTCTGGGAATTTATCTCCATCCTCGTCATGATGTTGCTAATTTCATGGGCATCTGTTCTTTTTTTTTTTTTTCCCCCGGTCTTCGATGATGCAGAGAATAACAGACA-TGTTCACAGGC--------CCTTTTGCCTATCTGTAG--TTTAACAACCTCTAGTGAACTAGTCCTCCTCACAGAGCCTCTTGACTGGTGTGGTTTTGAAACCTGA----TAAGAGCAAGTAGAAACTAGACATGCAAAGCTCCAAGAGCAGCA---TTACAGTCTCACTTCACAG---TAGCTCTGCATAAGCCTGATAATAGGAAAATGCCTCCTT a score=1822.000000 s hg15.chr12_random 355566 29 + 590431 CCCTTTTAACATTACCATTTCCCATTACC s mm3.chr10 7731485 29 - 130738012 CCCTTTGTGCACTGCCATTTCCTATTACC a score=5117.000000 s hg15.chr12_random 355595 83 + 590431 ATAAAGCCAGCATCCCATATTAAGATGTGGAAACCATTATCAAGGGAAGCAAAGGGGTAACTGCTGGTTCTCTTATTTGGAGG s mm3.chr10 7731514 62 - 130738012 CTAA----AATATCCCATGGTCAGATACATAGAC----------------ACAGAAATGGCTTTGGATTCTCTTAATTAGGA- s rn2.chr7 60540793 77 + 139049774 CTAA----AATATCCCATGGTCAGATACATAGCCTATCATCAAAgg-agtccagaggtggctttggattctcttcattagga- a score=22274.000000 s hg15.chr12_random 355678 292 + 590431 TCTTATCTGCGTTTGGACTCTTAATCTTTAAGCACAGCCCAACTCCCCTGCTGGATCTGGGATTCCTGTCTTGGTGCCAGAGATGTTGCTTAGATTGTGAGGTACTCTTTCAAAAGCCAAGCATCCACACATCACTGATAAT-AAAAACACTGAAGTCACATAAGTACTATAGAGAAAGCAGGAAAGGTGAAGGACCTTTGCTTTAACTATACCTGAGTCAAAAGGAAACTGTTT---AAAAAATCTGAGATACACAGACACATAAGATGTCACAACAGGATCCTATTCATAAACA s mm3.chr10 7731699 263 - 130738012 cCTTAACTG-----GGACTCT----------GTACAGCCCACCTCCTCTGATGGAGCTAAGAATTCTGTCACGGTCACAGAGATGTTGGTCTCAC--TGAAGTGCTCTTTCAGAAGTCAGACAATAATATATCGATGGTAATGAAAAGCAACAAAAATATATAAATGATATAAAGAAAATTAAAAAGGCAATGGA---------TAG-------AGAATCAAAATGTGAAAGCATTGAAAAAAAATTAAGATGGAAAAGCATACAGGATGTCATGGTGTGGTTTCATTTGTAAACA s rn2.chr7 60540972 230 + 139049774 cCCTAACTG-----GGACTCT----------GTACTGCCCACCTCCTTCGGCCAACCTAAGAATTCTGTCGCAGTCATAGAGATGTTGCTCATAC--TGAAGTGCTCTCTTAAAAGTCAGAT-----CATGTTGGTGGTAAT-AAAATCAACAAAGTTTCATAAACGATACAGAGAAAATGGAAAGGGAAA-GGA---------TAG-------TGAG-----AGGCAAAAACAT--AAAAACAATTAAGATGGAAAGGC-------------------GGTCTCATTTGTAAACA a score=143056.000000 s hg15.chr12_random 356057 1225 + 590431 TTG--GGTGTCCAGGATTATAAATCCCAAT--TACTATTTGAGTCTCCCCTTTTCTAAGTATTTCCAGAATAAGATAAATGACCACATTTTGCCTTAAAACTATGTTAATGAAAAAA---------------CTTCTAAAGCATACAATGCAATTTCCAAAATTTTAATAATGATAACTCAGTGTCACAAATGAAGCCAAATCTGGTGGGTAAGCCAGTGTTGAAACATAGGCACAAATGGCTTAGCTTGTCACTCTCGTGCAGTTTGCAAACCCTTCCCCAAGCTGCCAAACTGTACTGATTGCCAGGCCTCTGTAATGTCACACAATTTCTCTTAGGGGCTGTTGAGCAGCAGGTACACATACCTGTGCATGTCCTCATGGGGCACATGCCTGAAATCACACAGCTCCACACCCCAAGTTGCAAAACTGTTTTATGGACATTTTGCATATCTCTCTCTCTCTTTGATTCCCCATCAGAATGTCTCCTGTTTAACACCCCCTTGCTATTTCTAATCTCTGTAGTCAGCTGTTGCAGCTGTGTCTAATTCCACAATTCTGCTTCTGTTTCTTCattgattattc-aaaaagaatttat----taagaattatgtcccaagcactgtgtcaggcaaaaactgaaccaaaaagacatgatctctaattgcaaggagcttaaaatgcaga--gtagacagatgttaaacaaacaaatatagcattagaacttgcagtaatataatactttgagggggaaggatagaaaggagcttatttggactctggttcctgaaggcatttctgaggaggtaata-attaaactaaggcctaacagataaataggaaaaagccagagaaagagtgaagagaagacactgaaggcataaggt--gcaacacaggcaaaggcctgaaaccaatgagagcttggcacatgtggggaatggaaataggttggtaaacgggaagagtgaaactggcatgcaatcaagtagcaaaagaagtaggagtcagatcatggcttgtaggtcatgttaaatatttttaacacaagggttggctagtaaacagtattgacatgatctgcttgattatattttaaatggctgtcttgtctgtcctataggacagaactaagaagaaggcaagagtgga----agttagaaagtcaattacagggacattgcagtaatgcacgtgGACTCCATCTCTTCTCAGTGAGTTTATTCTGTCTCCTCCAGTCACTTATGACCCACTC s mm3.chr10 7733339 1163 - 130738012 aTGCAGGTATCCAGAATCATAAATCCCAATTCTACCAT----------GATCTATTAATCACTCCCCAAA-ACATTAAATGACCAACTTTTGCCTTTACATTGTTATTCTGAAAAAG---------------CCTCTAGCATATACAGCATAGCTTCCGATATTTTAATAATAGTAGCTGGAGGTTACAAATGAGACCAATTCTCCCAGTGTGGCTGGTATCAAAACATAGGCACAAACGGCTTAGCTCGTCACTCGGGTGCAGTATGCGAGC-TGTCTCCAGGCTGCTAAGCTGTATTGATTGCCGAGCCTCCCGAATATCACATTGATTCACTCAGGAGCTGTTCAGCAGCAGGCTCATGTTCCTGCACATGTCCTCATGGGGCACATGGCTGAAATCACACAGCTCCATGCCCCAGGTTGTAATGATGTTCTGTGAGCTGTTTGCACATAGATCTGTCGC--TGAGTCCCCTGTAAAGTATCTCCTGTTTACCACTCCCTTGCTAATTCTAATCTTTATCGTCAGCTGCTCCAGCTGCTTCTGCTCCAACCATTCTCTTTCCATCTCTTCGCTGATGATTC-AAAATGCAGTTATTGAATAAGAACTACACCCCAAGCACTGTGTTAGGCA-----------------CCACGGCTGCTTTTTACACGGTACTTACAGTGCAAACGGGAGGGAGCCATTTAACAAACACATCTGTCTTTGCCACCTGTAGCAGTGCAATACCGTTACAGTGAAGGATTGAAGGGA-CTCGTCTGGACTCTGATAGCAGAAGGCTTCCCTGAGG----AACA-TTTAACCCAAGGTCTAAGTGGC-AGGAGAGAAATGAGGAGG-GAAAGTATCATGGTGAAACTCAGGGCATAAGATACAAAACATGGAAAAAGGCCTGAAGCAAGC-CAAACTTGGCACA-AAGGGGAAGGGAAAGGAGGCCATAGATGCTGATGGTGAACCTGG-ACGGCATGAGGCAG-GAGAGAGGTCGAAACCCGGGTAAAGCTTGCAGGTCATCCTGAATATTTTCA--CTCATGGTTGACCAGTGCACA----CGCCACTGTCAGCACGGTCAGA---CCTGTGAATGCTCGGTCGGCTGTATAGAAATAATCCA--AAGATGTCAAGGGTTGATTGGAAACAAGAGGCCAATTGCAGGAGTGATCCATTAGCCCAGG----------CTCTACTC---------------TTTCCTCCATTTATTTACACCTAACTC s rn2.chr7 60542013 1162 + 139049774 GTGCAGGTGTCCAGAATCGTACATCCCAATTCTACCAT----------CATCTTTTAATCAGTCCCCAAA-ACACTACATTGCCAACCTTTGCCTATA-ATTGTTATTCTGAAAAAAAGAAAGAAAGAAAACCCTCTAGCATGTACAGTGTGGCTTCCTATATTTTAATAATGGTAGCTGGAGGTTACAAGTGAAACCAATTCTCCCAGTGTAGCTGGTATCAAAACACAGGCCCAAACGGCTCAGCTTGTCACTCAGGTGCAGTATGCAAGCCTGTCTCCAGGCTGCTAAGCTGTATTGATTGCCAGACCTCCTGAATATCACATTGATTCACTCAGGAGCTGTTCAGCAGCAGGCTCATGTTCCTGCGCATGTCCTCATGGGGCACATGGCTGAAATCACACAGCTCCATGCCCCGGGTTGTAATGATGTTCTGTGAGCTGTTTGCACATATCTCTGCCGC--CGACTTCCCTGTAAAATATCTCCTGTTTACCACTCCCTTGCTAATTCTAATCTTTACCGTCAGATGTTCCAGCTATTTACGCCCCAGCCATTCTCTTCCCATCTCTTTACTGAGGACCCAAAAATGCAGTTATTGAATAAGAATCACACCCTAAGCACCATGCTAGGCA-----------------CCGTGATCGCTTTTCCCAAGGTGCTTACGGCACAAAAAGGAGAGAGCCATTTAACAAACACGTCCGTCTTTACCAC--------GTGCAATTCTGTTACAGCGAGGGGTGGAAG-----------GGAGTCTGATTTCAGAAGGCTTCCCTGAGG----AACATTTTAAACCAAGGTCTAAACGGCAAGGAGAGAAACGAAGAGGAAAAAATACCATGATGATGCTCAGGGCATAAGGT--AAGACATGGGCAAAGGCCTGAAGCCAGC-TGACCCTGGCACA-AAGGAGACGGGAAA-GAGGCCATAGCTGCTGCTGCTGGGCCTGG-AAGTCATGAGGCAG-GAGAGTGGCAGGAACCAGAGTCAAGCTTGCAGATCATCCTGAATATTTTCA--CTCAAGGTTGACTAGTGCACA----CACCACTGTTGGCTTGGTCATGTCTTCTGTGACTGCTCGGCCGGCTGTCTGGAAATAATTCA--AAGATGTCAAGGGTTGATTGAGTACAGGAGGCCGATTGCAGGTGTGATACACTAGCCCAGA------------CTGCTC---------------TTTCACCCATTCATTTACACGCAACTC a score=147754.000000 s hg15.chr12_random 358045 1090 + 590431 AAACAGG--CAGAGACAGACAGATTTCTGCCATCATTAAATTAAGGCTCTAATTCT---TGCCTCTGTTCCTCCAGTTCTGGAATctaccccagtatccttccaagctacttgagctgattaattctctttttgttaagctagcttgagttggaagtctacgcctcttgcaagaaaattagtcctggctt-ataAAATAATACT---CAAATCCTTAAGAATTATCTCTTCAGTGTAATGATCTGATATCGAAATCCATCAGAGACTTAAAGATATTAAAATTGAAATTGAATAAAAATATGAATTCATA-TTTGACCACTTAACTTTCAGAGATATTACTATGACTA-----CCTACAGATATTTTACCAGATTTAGTTCTAGCAGCAGAAATTAAAGCCTAATTAGACACCTGTGGGAAGCTTATTAAATTATATTTACACATTAAATGTTTGCTTAAT-AATCTAATAAACCATAAGACCACTTGAGGTTACAAACTAGATGGCATATTTTAGACAAATTTAATGGAATTAGGTAGCTCACAT---AAAATTATTTAATCCAGTACATGTCATAAAAGACCT--AAAATGCCATGACAGAAAGAGACTTGTAATTTCATTTTAGTGGTAATGATGATATAAGGAGTAAAAACTGGTAAATCACAAAATATAGAAACACTCTGCCTAATCAATAGTGTAAGTCTATAGAACATCCTCCAAATCAATATGATATATAATAATGACAAGAAGCAC------GTAAATGAAAAAAA---------A------AGTGAATTGTCTCCCAGCCCAGA--ACTATTATC-----CGTACTATATTAAAAGAGCATTTAACACAAAAATGTGATCAGTCTTCTTAACTGCAGTAGCACTGACAATAAATAAAATTTATCTTTCCTTCTTCATAATAGAGAGTTATAACGCTCCAGAAACCTCACAAAA---CTAGAAAACAAATAGTTTTGAGAATCTTAGACCACACTAGCACTTAACTACAGACTCACACCTGCAGGCTTTTGGCAATATTTAGAACATTCAA-----------AGTTTATAATTACTGAGTTCAATGACCATTTATGCATAGGATGTGCATTATAAATTTAACTTCCAGTCGGAGAAATAGCAAT s mm3.chr10 7735189 1086 - 130738012 AAATAGGGAAAAATATGGGCAGACTTCTACTATCACTCACCT-ATGCTCTGGTCCTGGATAGCTCC----GTCCAATAATAGAATCTA-TGTAATATTCTTCTAA-CTACTTTAGCCAATTA---------CTATCAGGC--ATTTACATTGGAATTCTCTAGTCCGTCCAATGAAAGCTTTTCTATCTTTATAGAACAGTCCCCTACAGGT--TTCAGAATCACCTCCTTAATGGAATGGCCCCATATCAGAAT-CATCAGACATTCTGAGATAGTAAAAGT-AAATTGAACTAAACTCTGAGTCCACACTTTGACTAGATAGCATTCACACACATGACTAAGACTCAGAG-CCCATGTATATTCCACTGCATTTAGTCCTTGTAGCAGAAATTAATGACTAATTAGACACCTGTGGGAAGCTTATTAAATTATATTTACACATTAAATGTTTGCTTAGTAAATCTAATAAATCACAAGATCACTTGAGGTTCCAAAGCAGATGGAGTGTTTTACATAAATGTTAGGGAATTAGAGAGTGCACACCCAAAAAAATTGTAATCCAGAATGTGTCAT-AAAGACTGGGAAAATTCCATGAAAGGAGGAACCTTTTGACC--------AGAGTACTGATGATATGAGAAGAAAACCCTGGCAAATCACAAAATATAGAAGCACTCTTCCTAATCAATAATGTAGGTCTCTAGAACATCCTCCAAATCAATATGATATATAATAATGGCAAGATGTACCTAAGAGTAAATTAAAAAAA---------AAAAAACAGTGCATTGTAACACATCCCAGA--ACCATTATCTGAAGTGAAGTATATTAAAAGTGCATTTAACACAAGAATGTGGTTGGTCTTCTTAACTCGGACAACAGTGGCAATAAAT-TAGTGTGTC---------------TACAAAGTCATGACACGCCAGAAACCCTACAAAAAAGCTAGGGAACAAACAGCTTTGAG-ATCTCTGCACACTCTAGAACTTTATGGCACACACATGCGTATGAGTGTTTAGCA-------TATTATTCAAATCTTAAAACTATATTTTAATTGTGGAGTTCAATAACCAGCCACTGTTGAAGCAGACATGATATGTCCAGTTTTCAGCCAAAGAAATAACCAT s rn2.chr7 60544160 1083 + 139049774 AAACAGG--AAAAGATGGAGAGACTGTGGCCATCACTCATCT-ATGCACTGGTCCTGCATAGCTCTCT--GTCCAATGGTAGAATCTA-TGCAATATTCTTCAAA-CTACTTTAGCCAATTA---------CTGTCCGGC--ATTTACCTTGGAGTTCTCTACCCCTTCCAGTGGATGCTTTTCTATCTTCATAGAACA--------CAGGT--TTCAAAATCACCTCCTTAATGGAGTGACCCCATATCAGAAT-CATCAGACACCCAGAGACAGTAAAATTGAAATTGAACTAAACTGTGAATCCACACTTTGACGAGTTGCCATTCACACATATGGCTAAGACTCAGAGGCCTATGTATATTCTGCTGCCTTCAGTCCTAGTGGCAGAAATTAATGCCTAATTAGACACCTGTGAGAAGCTTATTAAATTATATTTACACATTAAATGTTTGTTTAGTAAATCTAATAAATCATAAGATCACTTGAGGTTCCCAAGCAGATGGCATATTTTACATAAATTTAAGGGAATTAGAGCGTGCACACCCAAAAAT-TTGTTATCCAGTATGTGTCAT-AAACACTGGAAAAATTCCATGAAAGGAAGAACCCTTCAACC--------ATGGTGATGATGATATGAGAGGAAAAACCTGGCAAATCACAAAATATAGAAGCACTCTACCTAATCAATAGTGTAGGTCTCTAGAACATCCTCCCAATCAATACGATATACAATAATGAGAAGATGCACCTAAGAGTAAATAAAAAAAAGGAAAAAAGAAAAACCAGCGGATCGTAACACATCCCAGAACACCATTACCAGAAGTGAAGTATATTAAAAGTGCATTTAACACAAGCATGCAATCGGTCTTCTTAACTTGGACAGCAGTGGTGATAAAT-AAGTGTGTC---------------TACAAAGTCGTGACACTCCAGAAGGCCTACAAAA---CTCAGGAACAAACAGCTTTGAG-CTCTCCACATAATCTAGAACTTTAGGACACATGCATGCCCATGAGTGTTTAACAGCACCTTGATTATT-----------ACTACTTTTTAATTGTGGAGTTCAATAACCAGCCACTGTCGAAGCAGATATTATATGTCCATTTTTCAACCAAAGAAATAACCAt a score=38500.000000 s hg15.chr12_random 359142 406 + 590431 AATCTCATTGAGAATGGAGCATTTTAGATAAATAAATTTTGCCAAG------------------------CATATGAGG-----------------------------AGGCAAATAA-----------TACACCAAGAGCCAGCAAtatgccaggcccttgctggctgcacttcacatatatgatgtcatcccagccccgtggcacccctgcatggtgggaagtatccccttcactttacagatcagtaaaccaaagctcagagcataagtaacttgcccacatcacttcagcctaagagatggatctggat-gcaaatacagtctgactctgagtcAG---------------------------------AAAAATTTTTTTCATTTAGATGATGTTTTATTCAATAAATGCTTATAAAATGAGAACAAATTATAGATGTAAATATTCTTTTAAAGTAGAAAATATTGAATGTATTTTCTCAAAGTCTCAAGGATAATTAT s mm3.chr10 7736282 453 - 130738012 TATGTTATTGAGAATGGCTTGTTTCAGATAAATAAAAACCATCAAGTAGCTTTTGTATCTTT--------TGTATCAGGTGTTCAATAAACCTCGTGGCAACTTTTAAAAGCAAGAGGAAGACAAACTGTACACTGAGAATCGACAGTGAGCCAGGCTCTGGCTGGCTATCCTCAGTGCTTATGATGTCATTCCAGCACCACAGCAACCCAGCAAGCTGAGAACTATGTCCTCCCCCTCACAGGCCACCAAAC--AGAGTCAGCAC----GGAGCTTGCTTGTATGACGTCCATGTAAGAGATGAATCTGTACAGCAA--GCAGTCTGACTAAAGACCTACATCTTTACCATA----GCTGCCTCCCCTTGCTATCAAGTGTTTACATTTAGACT-GTGTTTGGTTGATAAATGCCTT-AAAATG-GAACGTATTTGAGATGTAAGTACCCTTCTAAAATAGAAAATATT----------------------------GACTTT s rn2.chr7 60545710 454 + 139049774 TGTGTTATTGAGGATGGCCTGTTTCCGATACATAAAAACCGTCAAGTAGCTTTTTGATCTTTCCTGCTGTTGTATAATGTGTTCAATAAACCTGGAGACAACTTTCAAAGGCAAGTAG-----------TACACTGAGA-TCAGCAATGAGCCAGCCTCTGACTGGCTGTCCTCAGTGTGCATGAAGTCATCCCAGCCCTACAGCAGCCGTGCAAGCTGAGAATTATGCCCTTTTCCTCACACCCCACCAATC--AGGGTCAGCAC----TGAGCTTGCTTGCATGACAGCCATGTAAGAGATGAATCTATACAGCAA--ACCGTCTGACTAAAGACCGGCATCTTTACCATCGCATGCTGCCT--CCTTGCTACCAAATGCTTACATTTAGCCTGGCTTTTGGTCCATAAATGCCTTAAAAATG-GAATACATTTGAGGTGCAGGGACTCTTCTAAAATAGAAAATATTG---------------------------GACATT a score=276177.000000 s hg15.chr12_random 359571 3398 + 590431 TTGTTATCCCTCAAGGTCAAGTTTTTGATTATTCCACTTCCTG-------TCATTATGTCTGCCACAAACACTGCCTCTTCATAATAGCAACTCCCTCTacacacacacacacacacacacacacacacacaGCCCTTCAAGTTTGTTCTTTCAATCTTCTCTGGGTGGGAAACGA-----GAACACCATGTTGTTTAACTATTATATGTTCATTGAGAGCCATTAAAATTCTG-----GAAGAACTGAAAAAGTCAATTCCA--TGTTAC---CAAAGTCTTTGAAACCACTATGTCAGAGGCCTCCTTGGTTTATTCCCTTACTCCTAGTAACATTTACATCCCAAAGGACTGAAATTTCAGAAATGAAGGCTGGAGATAGAAAATTGCTTCCAAATACATGAAA-AGTGGCTGTATTTATACCCCTGTACAGTTTGGTCTGAGATTTCTGGTATACTAGCTAACTTCTAAATATAGACTCCAGCAATGATTTATGGACTAGATCAT-ATTTGCAATCCCTTACCCACCTGTTAG-ATCACTTGAAA-----------ATCTTGTTATAGCCTATATCATACATCTCATCCCATCCAGTCATCCTAAAAGAACAGTGTAGACCTTTCTATaacaatgaagatcatcacttgtgtacttc-------------------ttgaatgtcaagca-------------------ctgcacta---ggcac----------------------------------------------------------tctgcatgcagtgactcactaatctcataaGCAAACAGTTCTGCCCATTGTGGtatgcacattgtgctctt-----caaaacttttgagtgccagttatatggactactaggtgagtggtactccttgcaaatgtacaatgcccaacctacacaGTGGCATAAaggtaggtattattggattcccatggcacagaaattgaggaaactgaagcgtaaaa-gtttaagtga--TATAGGTATGTCAGGAAAAAAGGTCTTAATCACTGTGTTATACTGCACCCTACATTTTCCTACAGAATAATGTTGAGTTTTGATACCTTAAAACATACCCATACTTGCAGACACTTCAGATATATCTATACACAAGCACTCAGAATGCAGAAATGGCCTAGGTTAGTAGA----TTACCCAACAACAACTA---------TCTACTTCTCAAGAGTGCCCCAGAATAAACCAGGACCCAGAAGA--GTCCTGATGATCCTAAGAGACC-------CCTCAAATATAAGAACAGCTCCATAGATTAGATTATGGAACGAATTACCCATGCCCACCTAAGATCCCTAAGAGCCAATACATACATGACTAATGGATTTAACCAATACAGTGCCATGGCTGACATCAAATTATCAAACTAATTCCTA-AATGAGTCTATAGGTGCTAAGAACTGATACATCT--CTGATCCATAACCATGTCCAGTACGAATTTGGA-CTTAGCTGGAAATATACACTGAATACACTTTGCATTTACCTGGAGATGCACACTCATCATGCAATACTTGGTAACCAAATTTCCCTAGATTGTTAGTTCTTCCATAAGCCCAAACGTAACTCTTATTCAGAAAGGTAAACACTGTAGAGTTCAAGCAGGTTCCAAGGCAGCTCTGCAGCTGATAAGCCACAGAACCTTTTGTGCAGCTTCTA---TAAGAG----CAATCCAT--CAGATGGCATGTACCATCACTACCCTACACAGTAAGTTCTACTTCAG--CACAGTAGGAATGGACCATTTCTGGAGTCTATTTGAGAGCCCTTTCATTTATCTCAATTTTTACTGTTTACTGAGTACCTACTCTAAGTCTAATACTAGCCAATGGTATAGCACTAGCCAATGGTATATTGAAATG-----AAAGTGTAgcactag---ccaatggtatattgaaatgaaaaggaa-tagtccctgtcctcaaagaaccc---------acaggaaaagga--aggaggaagatgt---aaaaatagataaatcctaaaacacatagtagtgctgacaaaatggtgaaagagcaattagctctgcctgtg-ggtgggacaggaggttggagaaagattcatagaaaaaaaaaagtgacagtactaatgggtcttggaggacaagtaggagtttgcctagttaagaagctgaggtggagagcAGGTGGGAGAAAGCTGTTTCTTGCTATATAATTAACTGCAAGAGCATA----AAAGGAAATTTTCTTCCTGCTTTCATTATACTTGTGCTTTGTCCTCCCTTGAT--TATATTTTCTTTGAGTTTAAAGTAAGCAATCAGGGGAGATTCACTAGAATGTTATTTGGATTGAAGTGGAATGGTCTGGGTTCAGGTAGAAACTATTGCTATTTTTAAAA-TATTTTTCTGGGTCCATTAAAAAATCAGCTGCAATATCATGACTTTTCAACAGTTCATGTTGTGAAAACATGAGATATTTTTCTTCAGAAAAGTGTAACTTGAAGGTCACAATTAAATTAAACATCAACATTTATTAAGATCAAGTTAATACTCTCTGAAAATTAGATTAC------------------TCCCCCCAGTGTGTATTTAAATTGACAGCTGGTGACTAGGGTAACGTGTTCCACATTGTTGCACCATAGCAACATAGAAATCTTTACAGAATGTACAATGATTGCTGAAATGGTGATTCCTGAGATCTTTTCCAGTAAACCCCATGAGCTGAACTACTTCCTAAACAGCAGTGTCAGAAGTGTTCTAAACTA-CATGGCTTTATAGAGAACTCCA-GAGCTACCTCCTAAATCTGAACAATTCCTGTATTATGA--TACAATAATG--------------TACTCTGGACCCAATTTCCTCATCAGCTTAAAGAAAGAGAAA-AATACTAAGATGTATTACGGTAGAGGAAAAATAAGCTAGCACATATTTAGGTAAATCATATATCTACCATGTTTAATACTCATAGACTTCACTTAAGAAGACTCTAGGGCTGTCCTGAGCACAGTTGGTCCATCGCCTTTGTATCTGTCTTATCAGCAGTCTACTACAGTCTCTCCAAAGAGGAGAGAAACTTATGTTTCCCAC----------------------------------------------------------------------------ATATATTC-------------------------TGGGT---------------------------------------------------------------AG-----------------------------TACTAGCCTC---GACTTCTCTTTCTACAGCACATCCTTGTGCTCATGCAACCTCTAGCCCTGCTGACAATAGATGTGTGAACTCAATTTCATGACTCCCATTCATCTGATCAGAGTTCACACTCAGAAAAGTTGAAGAAAAGCATCTTT--------TAACACTGTCATCTTACACTCATTACAGCTGAAATCAGAAGCATCGCACTGGAGGAAACGTTGACCAAAATCCTGTTTGCTGTTCATTCAGAAATGTTGCTTCCCCAGAACTTCTGGCATTCACCTTGCTAACACTGACTACTTCTTCAAATCTGTAAT----ATTTGCTGTATGTC-TAGCTGGATGTTTTCATTTCCAATTTCATCCTAAGGTCAAAATCACA----CACTTACCCCATCAGAACC----AGCA-----ATGATCTGTTAT--------TAT-----CCAGTCCAATATATGAAGGGTGTCTTCAAACAGCAACTAGAGTTGTGCAGAATGGCTTATTAAA s mm3.chr10 7737228 3333 - 130738012 tTGTTTTACCCCCAGGTCAAGCTTATCATAATTCCACTTACAGGGCTTCTGCCTTGTGTCTGGCACAAACTCCACCTCAACATGG----------CTTCACATACATACACACAGGTGCTCACACAAAGGAAGGACTGCAAGCTTGTCCTTACAATCTTCTCTGGGC---ATACTATTTTTAAA----ATGCTGCTTAATTATTGTACATCTATCAAGAAGCATTAAAATTCTA-----AAATAACCCTCGAATTCAGTTCTGT-TATTACTGGCAAGGGCTTTGAAATGACTCTTTCAGAAACT-CCTTGGCCTGTTTCCTCATCTTCAG---------CATTATATAGTATTGAAGTTTCAGAAAGAAAGACTGGGGACaagaaa-------aaaaaaaaaaaaa-aaaaCCATCACTTCCACCAACATGAAAGCTGG-------CTTCTAATAAATTAACTAACTTCCAAATATAACCTGTAGCTTTGATCTGTGGAGGATATTGTTATTTTCTGTCT--TACCTACCTATAAACATAATTTGAAATA-------TTATTTACTTGGGGCCTTTCTCCAACCTCTTAGCTCATTCAGTAATCTAAAATCAACAGTCTCTGCCTTCTCATAACAACAAAGGTTGTCATCTGTACATCCCTGAAAGCAcagcactgacaatcactgacaagcactgactggcactgac----tggcactgaccggcactgaccagcactgaccagcactgaccagcactgaccagcaTTCCATAGTACTGCAGAGATCCACATGCAGAGAATGACTCAGTTCTAAGCCAAGCAGCCCTGT--ATT-----CTGTATTCTGTGTTTTTTGTTTCAAA-------GGTGCTAATCCCATAGACTACAGAAGAAATGGT--CCCTT--AAATGGGCAGCATCTAACCTGCAGACTGTCCGGAATGCAGATACTATTCCATCCTTCTAAGACAGAAACTGAGGCCAACGAGGCTTAGAGTGTTTATGTAAGTCACAGAAGCATCGGAAAAAAGCATCTTAGTCATTATGACAAGCTTCATCCTATGCTTTCCTATAGAACAGTGTTCAGCCATGATACCTTAAGATGTGCACATACATAAAAACAATTCAAGT-----------CAA-CAATCA-AATTCACAAGCTCTCTAGATTAGGAGGAAGCTTCCCAAATAACAGCTACAACCGGAGCCTGCTTCTCAAGTATGTCCCACAATAAA-CAAAAC-TGGGAGAGCATTCTAGGGCTCCTAAAAAATC-CTAAATTCTCAGCGATCAGAACC-CTCTATAGTCTCCTTG------CCACTGACCTGTGCCC----------------AGCCAGCTCACGCCTGACTAATGCGCCTGACACATGCAGCACTTTGGCTAGCACCAAATTATCAAGCTATCTCATA----------------------------TCCTCCTCTCTCATCCATGATCGTGGTTATAATGAATCTAAACCTTAGCTGGAAATCACCATTGAAGGCATTTGAGGTTTGCCTGGTG-----------------------TGGGAATT--------------------TTCTGTCACTAAAACAAA--TAACT--------------TAAATAATG-------------------------GCTTTGTG------AAGAGAAAAGGCTTATTTTGC--CTTCTGATTTCAGAGACCCTAGTCCATGACTGGTGGAGAGAAAAATAAATAAATAAAACA-----TCCCCCTTGTGGTCACAAAAGGAAAGAGGCA-GGAAGAAGACTGTGTGGAGGAACTGCCATTC-CCTCA-----------------AGGACCTAC-----------CACCAG-----GGTTTGAGGCTCTCCCAT------TTGACCTGCCTCTAGAAGGTTCCACTAGCTCCCAATAGCAC-----AAGGCTAGAGAT-CAACACTTTACCATATAGACTTTA--------ATAGACAAAGTGCTGAGAGGAAGTCCT---ATTTGCATATGAGACATAAAACTAATGG---------------------AGGG-----GGCTTTGCCAGGGTGGGGGAAGGAGAGATTTGGGGGGG--------GGGGGGTAAAGCAACAGGA-GAAAAGGTCTTGAAGGGCCAGTA-GAGTTTGCTTGGCCAAGAAACTGA-----------------ACAAAG-TACTCTTTGCTGAACGATTAACTAGAAGAAAAAATTATAAGTGACAGTGTTTTCAAGCTCTCAGCACTCTGCCGCTTTGTCCTCTCTTGattttatatatatatatatattCAATTAAGTAATCAAGAAATACTCACCAACCTGGTACTTGGACAGCCATGGAC---TCTGGGTTCAGATGGGTATCACTACTGGTTTTAAAAATACGTTTCTAGGACCATTAACCTACCAGACACAGTATCCTGACTTTTCAACAGCTCA---TGAGAAGAGCAGAGATTCTTTTCTTC-ACAAATTGTATCGTAAAGGTCACAATTAAATTAAACATCAACATTTATTAAAATCAAGTCGATACTTCCAGAGAATGAGATTCCCCTCCCCTCCCAGCCCCCTTCCCCTACCTGG---------TGGCAGCTGCCTAGTGGCTGGTCCTGATCCACATCAGCGCACCATGGTAACACAGAAGCCAGCGTGGGATGCAAACTCACTGCTGAGACAGTAACCTCTGGGATCTTTCCTGGAAAACTCCGAGCGCTGAACTACAT--TCGATGACATTGG-GGAACAGCTCCGAATTACCGTGGCGCTGCGGAGTGCTATGCTAGCTGCCCTCAAAAGCTAAACTAGCCCTTTACTATATAGCACAAGAGTG--------------TGCCCAGGAGCTAATTCCCTCATCAGCTTGATGTAGAATAGGTGACAATAAAGTATGTAATGCATTGGGAGCA--GGGCTAGCA---ATTCATGCTA--CTTAAAGCTACAGTGTTTAGTGCTCACAAATTTGACCTAAGATGACTCTGGGGCTCTCCTGAGCATGGCTGCTCTGTTATCTCCTTATC-------------------GACTGTCTAGCCAACCAAGTAAGAAATATATACTTcacacacacac----------------------------------------------------acacacacacacaTGTAAATATATAC------------ATGTGTGTGTGTGTGTGTGACagagagagagag------------------------------------------------agagagagagagagagagagagagagagagagaCAAGCTTCCTTGATCGCTCTTCATACAGATTGCTCTTATGCGCATGCGACCTCCGGCCCTTC-GACAATAAATACCTGAACTCGATTATACAAGCTCCATTCCTGTGATCACAGCTCCCACTCAGAAAGGTTGTCAGAAAGCATTCTTGCATTCTTCCACTCTGTTACCTCATATCCGTCACAGCCAA--------------CACCAGAGGAAATATTGACTAAAGT-CTACTTGCCATTCACTCAGTAAGGTTGCTCCCCCAAAACTGCTGGCATTCGTCATTCTAACGGGGACC-CTTCTTGTAAACTGTCATTAATATTTGCTGTATGTCTTAACTGGACACTTTCATTTCTAATCCTATCCTGAGGCTGAAGTCAGGCACGCACTTACCCCATCCGAACCTAGGAGCATAGATACGATATGATACAGTCTCTGTGTATCGTCCAGTTCCAAATCTTCAAG-----TTAAAACAGCAACAAGAGTCGAGGGGAATGGCTATTCATA s rn2.chr7 60546187 3284 + 139049774 TTGTTTCACCCCCAGGTCAAGC------------CATTCACTGGGCTTCTGCATTGTGTCTGACACAAACCACACCTCAACACAG----------CTTTGCGAACATGCACACATGTACTCACACAAAGGAAGACCTACAAGCTTGTCCTTACAGTCTTCTCTGGGC---AAACTATTTTTAAA----ATGCTCTTTAATTACTATATATCTATCAAGAAGCATTAAAATTCTATTCTAAAATAACCCTCAAATTCAGTGCTGCGTATTACTGGCAAGGA-TTCAAAATGACTCTTTCAGAAACC-CCTTGGCCTGTTTCCTCCTCTTCAG---------TATCCTATGGTATTGAAGTTTCAGAAAGA--GACTGGAGACAAAAAA-------AAAATGACAAAAATAAAAACATCACCTCCACCAATGTGAAAGGTGG-------CTTTTCATAAATTAACTAACTTCTAAATATAGCCTGTAGCTTTCACATGGGGAATATATTAT-ATTTTCTATCTCTTAGCCACCTGTAAGCATAATTTTAAAAAATAGCATTTATTTATTTGGGGCCTTTCTACAGTCCCTTGGCTCATCCAGTTATCTAAAATCAACAGTCTCTGCCTTCTTGTAACAACGAAGGCTGTCATCTGCACATTCC-------------------------------------------CTGACCTCATagcactgaccagcactgaccagcactgaccagcactgaccagcactgaccagcactCCAGAGCACTGAAGAGATCTCCAT-CAGAGAATGACTCAGTTCTGAGCCAAGCAGCCGTGC-CACTGTGA-CTGCATTTTATGTTCTTCGTT-CAAA-------GATGCTAATCCCATAGACCACAGAGGGAATGGT--CCCTT--AAATGGGAGTCACCTAACCTACAGGCTGACCTGAATGCAACCGCTATTTCGTCCCTCTAAGACAGAGACTGAGGCCGACGAGGTGTACAGTGTTTGTGTAAGTCGCAAAGACATCAGAAAAGAGCATCTTAGTCATGATGATGAGCCTCATCCTATGTTTTCCTGTAGAATAGTGTCCAATCATATTACCTTAAGATGTGCACGTAGATATGAACG--TCAAGT-----------CAATCAATCA-AGTGTGCAAGCTCTCTAGATTAGTGGGGAGTCATCCAAAGGACAGCCACAAGCAGAGCCTG-TTCCCAAGTGTGTTCCGCAATAAA-CAAACCCTGGGAGA--ATTCTAAGGCTCACGAAAGATCACCAAATTCTCAACGGTCAGAACC-CTCCACGGGCTCCTCT------CCACTGACCTGTGCCC----------------AGCTGACTCGTGCCTGACTAATG-----------------------GTTATCACCAAATCATCAGGCTAGCTCATAAAATGAACTTCCGGGTATAAAGAATTAATCCTTCTCGCTCATCCACAATCACGGTTATAATGGATCTGAACCTTAGTTGGAAATATCCACTGAAGACATCTGACATTTGCCTGGTA-----------------------TGATAATT--------------------TTCTGACACTAAAACAAA--TAACT--------------TAGATAATG-------------------------GCTTTATG------AA-----AAGGCTTATTTTAC--CTCCTGATTTCAAAGGCCCTAGTCCATGACTGGTAGAGGGAGAACAAAATAAA----ACA-----TCTCCCCTGTGGTCACGAAAGGAAAGAGGCG-GGAAGAAGACCGTGTTGAGGAACCGCAGTTC-CCTCA-----------------AGGACCTGC-----------AACCAG-----GGTTTGAGGCTGTCCCAT------TCGACCCATCTCTAGAAGGTTCCGCTAGCTCCCAATAGCAC-----AAGGCTAAAAATTCAATGTTTTACCATACAGACTTCATGACCAACATGGGCAAAATGCTGAGAGGAATTCCTTCTACCCACATATGAGACATTAAATT-------------------------------------------------GGGGGGAGGGGAGGTTTGCGGGGG-------------------------------------------------------------------AGAAACTGA-----------------ACAAAG-TGCTCTTTGCTGCACAGCTAGCTTGAAGAATAAATTATCAGTGAGAGTGTTTTCAAGACCTCAGTACCCTGCTGCCCTGTCCTCCCTTGATTATGTTTTTTTTTTAATTTTCAATTAAGTAATCAAAAAATACTCACTAAGCTGTTACTTGGACAGCCATGGAA---TCTAGGTTCAGATGAATAGCACTGCTGGTTTTAAAA-TACGTTTCTAGGGCCATTAATGTACCAGACACAGTATCCTGACTCTTCAACAGCTCA---TGAGAAGAGCGGAGACTCCTCTCTTT-GCAAAGTGTATCGTAAAGGTCACAATTAAATTAAACATCAACATTTATTAAAATCAAGTTGATACTTCCTGAGAATGCGATTCC------------GTCTCCTTCCCCCAGCTGG---------TGGCAGCTGGCAAGTGGCTTCTCCTGTCCCACACAGCCGCGTCATGGTACCACAGAGGCCATCGTGGG-----------------------------------TCTTTCCTGGTAAACTCCGAGAGCTGATCTATGT--TAGACAGCACCGT-GGAACAGCTCCGGATTACCGCAGCACTGCTGCACGCAACGCCAGCTGCCCTCAGAACCTGAACTGGCCCTTTACTGCAC--CACAAGAGTACCCCTAGGAGTGAATGCCTAGGAGCAAATTCCCTCATCAGTTTGATGTAAAATACATGATGAAGAGGTATGTAATGTGT-GGGAGCA--GGGCTAGCA---ACTCGTGCTA--CTTAAAGTTACAGTGGTTAGTGGTCACAAACTAGACCAGAGATGACTCTGGG-CTCTCCTGAGCATGGCTGTTCTGTTATGTCCTACTCTGCCTT-------------AACCGTCTGGCCAACCAAGTAAAAAATAtctctctctctctctctctctctctctctctctctctctctctctctctctctctccccccccccctctGGCACACATACATATGTAAATATATACCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgAAAGAGAGAGAGAGGTATATATTTACATGTGTATGTGTGCCGGGGGGGGgagagagagagagagagagagagagagagagagagagagagagaAACAAGCCTC-TTGATCGCTCTTTGAACAGATTGCTCTACTGCTCATGCAACCTCTGGCCCTTC-GACAATAAATACCTGAACTCGATTATACAAGCTCCATTCCTGTGATCACAACTCCCACTAAGAAAGGTTGGCAGAAAACATTCTT--------CCACTCTGCTCTCTCACACTCATTACAGCTAA--------------CACCAGAGGAGATATTGACTAAAGT-CTATGTGCTGTTCATTCAGTAAGGTTGCTTCGCCAGAACTGCTGGCATTCGCCGTTCTAACAGGGACC-CTTCTCATAAATGGTCAT----AGTTGCTG-ATGCCTTAACTGGACACTTTCCTTTCTGATCTTATCCCGGGGCTGGAGTCACACATGCACTTACCCCATCCGAACCTAGAAGCATAGATACGATCCGATACAGTCTCTGTAT-----CAGGTTCCAAATCTTCAAG-----TCAAAACAGCAACAAGAGTCGAGCAGAATGGCTATTCACA a score=79818.000000 s hg15.chr12_random 363286 417 + 590431 GACTACATGCTTCCTCATAAACACCTGGGAACTGGAGGGGCAGGATGGTATGCATTGATAGGAAATGATACAAATGATAAATGAACAATGTCTAATTATTCAGGCATTGCTCAGACTCAGAGACAAAAGCAGGAAAACTGAGAGTTAGGGATGAAACTCCATCCTCCTCTAACCCTATTGTGCCTGTGTACTGCAGTACATATTAAAGTAACATCAAGACCTATTTTTAGACTTCTGCAATTCCACAGGCATAAATCATTCCTGTACCACAAGTCACCTTTGAGTTGGCAGTGCCAAGTTTAACATTTTGCAGAATCCTACAATATAATTGAAAGCAAGTGATATTTAAAATGAATAGTGATAATTTTAATAGAATAAAATTAGCCTAAATATAGCTTGTTTGAGG-GAATTTATTGA s mm3.chr10 7740561 415 - 130738012 GACTACATGTTTCCCCACCAACACGTCAGGGCCCGCAGGACTGGGTGCTGTGCGCTGAGAGGAAATGATACAAGCGACAAATGAGGAACATCTAATTACTCAGTCACTTCTCAGATTCGGAGACAAA-GGAAGGAAACGGAGAGTTCAGGATGAAACTCCAT-CTCCTCTAACCCTATTGTGCCTGTGTAGCATGGCACGCGTTAAAGTAACATCGAGCCCTATTTTTAGACCTCTGAAACTCCAGAGGCATAAATCATTCCTGGGCCGC-AGTCACCTTTGCATTAGCAATGCCACGCTGAACGTTTGGCGAGATCCTACAACATAATGGGAAGCAAGTGGTATTTAGAATGAATAGCGATTACTCTCAGAGATTAAAATTAGCCTAAAAATAGATTATTTGGGGAGAAGATATTGG s rn2.chr7 60549471 414 + 139049774 GACTACATGTTTCCTCACCCACACCTCGGAGCCGACAGGACGGGGTGCTGTGCGCTGGGAGGAAATGATACAAGTGACAAATGAGAAACGTCTAATTACTCAGTCACTTCTCAGATTCGGAGACAAAAGGAAGGAAAC--AGAGTTCAGGATGAAACGCCAT-CTCCTCTAACCCTATTGTGCCTGTGTACCACGGTGCGTATTAAAGTACCATCAAGCCCTATTTTTAGACCTCTGCAACTCCAGAAGCATAAATCATTCCTGTGCCAC-AGTCACCTTTGCATGAGCGATGCCACGCTTAGCGTTTGGCAAGATCCTACAGTATAATGGGGAGCAAGTGGAATTTAGAATGAATAGCGATTACTCTCATAGATTAAAATTAGCCTAAAGATAGATTATTTGGGGGGACGATATGGG a score=45228.000000 s hg15.chr12_random 363703 590 + 590431 GTAATAATTAAAAGGAAAAGTGACAAACGTGCCATTTAGCTAATCCTATCTTCACAATAGCTTTCACAGTTGAATTTGGAATGCTGTTCTTCTGAAGCAAAAAAAAAAAAGCTAATGTAATGGTCTTTTTCT----------------------------TTTTACATAATATTGATTAACCCTCAGCGATTTTAGACACCAGGGTTTGCTCTGAATTGCGCATCTGATTAAAGAAGGAAAAGCATAGTACAACTAAAGTCACAAGCTGGTCAAAGTGTTACTTTTTATATTAGCCCGTGTCTTTtgttgagg----agaattaaaaacaaaatcttttcccaacccagaaatcttatccataaaagtagcaagaaag---aaaacatttttaccattgaataagcattaaaccaaaatggaat----gtgcatcataggtaatctgcttagagattccagagaatgaaagaaatctcactcttgtatacagccacacagatacaaatcattacatacatattttcaagataagcaataactagtcctcaactaagaggacttgatggtacaatttgtcatgcacgcttcatcctaa--atttacctggtaatcggggtgaccatc-----------ggtgt s mm3.chr10 7740976 565 - 130738012 TTTGG--------------------------CTTTTTGGTTG-----gtttttgttgttgttgttgttgttgttgttTTGGTTTTTTTCCTC------------------GCTAATTTGGttgttttgttctgtttcattttgttttgttttgttGCTTTTTTCATATTACAT---CTAATTCTTTGTGACTTTAGCCACTGAGGACCTCTCTGAAGTGCACAACTGACTAAAG---AAGAGAGACAACACAAAGAGAAG-ACACGCTGGTCAAGGTGCTA-TTTTTACAACAAGG-ACATCGGTtattatggaaacagaatcaaaagggaaatc---tcccaaccaagtcaccctctccatcaagagagtaaaagat-----ttttcttatattattgaataagcatgaaacctgcctgtgttatagatacatca-aggtaacctgctagcaga-tacaaagactgaacactatcttat-gtttgatat-gtcagacaaatattaataatttcaaag--agcttcaagataagcaataataacttctcaagtaagaaaactcaccggcaccattt----cacacatttcattccaattgtgtacctagaga-ctgggagtccatctacattacctagctag s rn2.chr7 60550013 569 + 139049774 TTTGGGTTT----------------TTTTTTTTTTTttgttg-----gttgttgttgttgttgttattgttgtt--TGGGGTCTTTCCCCTC------------------CCTGATTTGGttgttttgctctgtattgttttgttttgtttt--------TTTAATAATACAT---CTAATCTTTTGTGATTTTAACCACTGAGGTTCTCTCTGAAGTGCACATCTGATTAAAGGAGAAGAGAGACAACACAGAGA------CATGCTGGCCAAGGTGCTA-TTTTTCTAACAAGCCACATCCGTTACCACAgaaatagaatcaaaagggaaatc---tcccaacctagacaccctctccatcaagatagtaaaagatgaaaatagttttttattattgaataagcatgaaatctgcctgtcatataaatacatca-aagtaacgggctagcagg-tacaaagactgaacgttatcttaaagttttatat-gtcaggcaaatattaataatttcatac--agcttcaagataagcaataataagtcctcaagtaagaaaattcaccgacactgttt----cgtgcattccattccaa--atgtacctggtaatcaggggggccagctgcattaattagccca a score=170102.000000 s hg15.chr12_random 364293 1225 + 590431 aagctaactggctttctctaggggagag-caaacttctcatctctttatgac------------aaggtgat------------tttgag-------gctcaagtttggctcctacg-tctcacagaaactgagagattgagttgctatctccctggatgtttacatttcaaaacgttggctgccaag---------------tccttgagggggtaaactgacaaaaagtctatttagttttcaaaaggatttacata----catttcaaagagaggagaaagtacttataattacaagtttcctaaagtaa--------------aggaaggggga----aaggtctcccttttttttgttttgttttgttttctacagagagaattaagcctcttattttcaacttttatttgtccttacaCCATACAGGTTTGGTGTGATTACCATAATGCAAACTCATTT-ACAGAAGATATGTGACTGCTCC-GAGTCCC-----CAGAAGA--GAAAATCAAAAACAAAAAGAAC---AAAATGAAAATGGTTTCTAAACCATTAAATCAGCACAAATTAATATGTCATGCCAAACCACATGCATTATAGACTGCAATGATTATTGATAATGTATTTCACCAGGGGGAAAAAGCAAATTCTTAATAAGCCTTTGTTTTCCTGCCTGTTTCTGACAGGGATGATGATTTCATTTTTAATTTGTTCAGAAGTAAGTTTATAATGATAACCAAAGGGAAACAATTT---GCTCCCCTGTATGAGATTATCTATAGTATCATTAGCCATTAAAAATGTATTAGATTGAGTACAAAGGGGAGTTTTGTATTCATCTAAATAATGCATGTTACTCTACCAAATACAAAATGTATAACAGAGATGAGTTAAATGAGTCAACTTACCAAAATTTCAAATCAGTGCTCATGTTAGAACTTATTTAGCTGATACATTTGGCTGATGACGCAT--CCCAGATACGTAGTTCAAACTATTTAATGAACTTTCTACCTATATACAGTAATTTCCCACTAAGTGCTCTGA-----TAAAGCACCATCTAATGTTAGCATTAAGAGGGATGTGTAATACGAATCAATAGCCAAATAAAACAAAACCACCAGAAGTCAGAAGGGGATAATG--CAGAGAGTAATGCTTTCTGATGAGACCTTTCTTTAGAGGGCAACATCAAAAGGAATCATCCAGCGTCTGCTGCCATTAGCAGATCACATGCAACCGTTAGGAAGTTGCTAACAGAGTTCCTATTTAATGAAAAATAGGTGCACTCTTAGCTCTTGCTA-ACTGTGT s mm3.chr10 7741762 1209 - 130738012 gggctaactggtgttattgagaacagactcagacgtctcatattttcatgacagaaggctctggaatgtgaa-cagcctgcccctttgagcatcctagctcagtttagactcctatgattccagagacactgagagtccagggtgctttctccctaggggcttatacttcaaagggatggcctccaga-------------cattcctaagtcctaaagctgacataaggtc-----------caaaaggattttaaaaaga-catttcaaagacaggagaaaatac----aattacaagttctctgagctaaagactttttttttaaaggagggggtagaagaaatgttcctgtc---------------tttgtaacaggaagaactcagcctcta--ttttaattttta-ttGCTTGTACTTCGTTCCAG-TCACTGTGATTACCATAATGCAAACTTTTTTTACAGAGGACACGTGACTACCGCCAAGTCCCTAAGACAGAGGA--AAAAAAAAACAGCAAAAAGAACTATAAAATGGTAATGGTTTCTCCACCATTAAATCAGAACAAATTAATATGTCATGCCAAACCACATACATTATGGACTAAGATGATTATTGATAATATAGCTCGCCAGGGG--AAAAGCAAATTCTTAATAAGCCTTTGTTTTCCTGCCCA--TCCGCCAGGGATGATGATTTCATTTTTAATTTGTTCAGAAGTAAATTTATAATGATAGCGAAAGGGAAACAATCGGCTGCTCCCTCGCATGAGATTATCTATATAATCATTAGCCATTAAAAATGTATTATGTTGCGTACAAGGAGGAGTTCTGCATTCACCTAAATAATGCATACCGCCC-------GACAAAATGCATAGCAGAGATGAGTTAAGTGTGGCAACTTACCAAAATCCC-GATCCATCCTA------------------------CGGTTGGCTGTCGGTGCAT-GGCCA---TCGTAGAGC--GTCTTTTCCTAACTCTTCTACCTTCATACCGTGATTTCCTGCTAAGTGCTCTGATGAATTGAAGCACCATCTAGTGTTAGCATGGAGAGGGATGTGTCATGCCAATCAACAGCC-----AAATAAACCCACCAGAAGTCAGAAGAG----ATGCTCAGAGGGTAAGGCTTTCTGGCCAGCCCTG----TAGAGGGCAACACCTAAGGGAGCCACCCAGAGCATGCTGCCATTAGCGGCTCACAGACTCGACTTAGGATGGTGTC-----TGTTCACACTCAATGAATGGTAGGCATAATCCTAGTTCATGCTACACGGTGT s rn2.chr7 60550794 1223 + 139049774 gggctaactggttttattgagagcaggatcaaacttgtcatatcttcatgacagaagtttttggaatttgaatcagacttcccctttgagcatcctggctcagtttaggctcctctgattccagagacactgagagtccagggtgctctctccctaggggcttatagtccaacaagatggcctccagatcctaaaggaagacattcctaagtcctaaagctgaccaaaggac-----------tgagaggattaaaaaaaaaacatttca--gacaggagaaaatac----aatgacaacttctctgagctaaagacttcat-----aaaaagcaggaag--gaaatctaggtttc---------------cttgtaacagggagaactcagcctccaatttttagttttca-ttgctctcacTCCATTTCAG-TCACCGTGATTACCATAATGCAAACTTTCTT-ACCAAGGACACGTGACTGCCGC-AAGTCCCTAAGACAGAGGTTTAAAAAAAATAAGCAAAAAGAGCTATAAAATGGCAATGGTTTCTCCACCATTAAATCAGAACAAATTAATATGTCATGCCAAACCGCATACATTATGGACTAAGATGATTATTGATAATATAGCTCGCCAGGGG--AAAAGCAAATTCTTAATAAGCCTTTGTTTTCCTGCCCA--TCTGACGGGGATGATGATTTCATTTTTAATTTGTTCAGAAGTAAACTTATAATGATAACGAAAGGGAAACAAATTG--GCTCCCTTGTATGAGATTATCTATACAATCATTAGTCATTAAAAATGTATTATGCTGGGTACAAGGAGGAGTTCCGCATTCATCTAAATAATGCATGTCACCC-------AACAAAACGCATAGCAGGGATAAGTTAAGTGTGGCAACTTACCAAAATCCC-CACCGGTCCTAATGTCGGAC------------GTGCAGTTGGCTGCCCGTACACGGGCCA---ACGTGGAGC--TCCTCTTACTGACTCTCCCACCTACGTACGGTGGTTTTCCGCTAAGTGCTCTGA-----TGAAGCACCATCTAAGGTTAGCATGAAGAGGGATGTGTAATGCCAATCGATAGCCGAGTAAAACAAACCCACCAGAAGTCAGAAGGG----ATGCTCAGGGACTAATGCTTTCTGTCGAGCCCTG-----AGAGGGCA--AGCAAAGGGAGCCATCCAGAGGATGCTACCATGGACCGCCCAC--ACTGGAGTGAGGATGGTGTC-----GTTTCCCATTTGATGAAAGATAGGCATAGTCCAGGTTTGTGCTACATGGTAG a score=607.000000 s hg15.chr12_random 365901 29 + 590431 aaaaacaaacgaac--aaacaaaaacTATAA s mm3.chr10 7743451 31 - 130738012 aaaaattaattaaTTAAAAAGAAAGGCATAA a score=26235.000000 s hg15.chr12_random 365930 351 + 590431 AGGTTTAAGGCGAACACTAAGGAGAGTCCTAAATTCAGACGTTATCCAAAAAGTTAACTGGTTTGGGGTTTCTGGGAAAATAAAGGGAGAGGCAGAAGGGAAGGGATGCTTCGAATTCCTGACTTGAATTTTAATTCTGTCAATTC---TAAAATCTGCCCTCCAATCTGATGTGTTTGGCAAATTAAAAGAAAGCGTAGAAAAATTGCTATAGATGACACTGTGGCCTGCTTGATGAGAATCTGTAGAGTAACAGTAAACTTTTC-TTTAGTATACTCCCCTTTAATTTACATGAAAAGAGAAG-CTGTTTCTCCAACACTCGCCCCTAACATCCCACTGTGAAGACAGCTGCCT s mm3.chr10 7743482 288 - 130738012 TGGTTGAATGAAAATAC--ATGAGCCCCCT-AATTCAGGTATTTTCCCAAAAGTTTTCTGGCTTCTCCCATCTGGGAGAATGA------AGGCAAAAGAGAA-GGACGTTTTGAATTCCTAATGTAAATTTCTACACTATCAAATC---TGAGTTTCCT-------------------------------------------------CTAAAGATGGCATCCCAGCCACCTTCCTGAGACGCTACAGCGCAATACCAAACCACCA-TTCAGTGTTCTCCAC-----TTTACATGGATGCAGAGGTTTGCTACTTCAGCGCTTGTCCCTAAGATCCCACCGTGATGGCAGCTGCCT s rn2.chr7 60552040 288 + 139049774 TGATTTAATGAAAATGC--ACGTGCCTCC--AATTCAGGTATTTTCCCAAAAGTTTTCTGGCTTCTCGAGTCTGGGAGGATGA------AGGCAAAAGAGAA-GGATGGTTCAGATTCCTCATGTAAATTTGCACACAAG-AAATCTGTTGAGTTCACC-------------------------------------------------CTAAAGATGACATCCCAGCCACAGTCCTGAGGACCTACA--GCAGCAGCAGATGACCCTTTTAGTGTACTCTCC-----TTTTCTTGAACGCAGAGGTTTGCTGTTTCAGTGCTTCTCCCTAAGAGCACACTGTGATGACAGCCACCT a score=30620.000000 s hg15.chr12_random 366301 345 + 590431 AAAAGTTAAAATAGCTTCACTGTCAGGAGTAGCAGCAGCAATTGAAAGACT----TGTAAAAGAGCT-CATTTTACTGCAATAGAGCGTTCTGTTTTCCAAAGGATCACCGCTACCTTTTTTTTATTATTATTTCAGCACAGTCTTCGAAGAAATGACACCCTTCCTCTATTATCACCCTCTCTGCTGTTCCCCCTGTTGACATAGGTCAAGACAAAATTCCAAAAGCAGAACGAGAAAGGTTCTGCTTTCTTAATGTTCCTCACGCA--GAGTTTTGATTTCATTTTCTTATATTGTTAAGATTCACTTCTATCTACCTCCCAGTAATGAAAGTAATTAATAGAAGTTAAA s mm3.chr10 7744253 314 - 130738012 aaaaGTGAGAACAGCTTCCCTGCCAGGAGCCACAGCAGCAACTGGGAGATT--TGTGTGAGAGAGTTTCTTCTCCCAGTAGT--AGTGTTCTG-TTTCTGCAGGATCGC-ACTTCCCTT---------TGACTTCAGCAGAG--GTCAAACGGACCCAACCCTTCCTTCCCCACCTCCCCATCAGACCTTCC--------ACTCAGGTCAAGACAAAATGCCCACAG------GAGAAA---CCTGC-TTCTCAGCGTTTTTCAGACTTTAATTTTTGCTTTCATATTTGGATCCTGCTCAAACCCAC-CCTCGCCGGAGCCTGGGAGTAAAAGTAGTTA--GGGAGTAAAA s rn2.chr7 60553525 311 + 139049774 AAATGTGAAAACAGGTTCCCTGCCAGGAGCCACAGCAGCACCTGAGAGACTAGCGTGTGAGAGAATT-CTTTTTCCAGTAGC--TGTGTTCTG-TTTCTACAGGATCGCTGCTTCCCTT---------TGACTTCAGCAGAC---TCAAGACATCCCTGCCCTTCCTTCACCAGCTCAACATCAGCCCTTCC--------ACACAG-TCAAGATGAAATGCCCACGA------GAAAAA---CCTGC-TTCTCAGTGTTCTTCAGGCATTGATTTCTGCTTTCATATTCTGATCCTGCTAAAACCCAC-CCTCGCTGGAGCCTGGGAGTAA---TAGTAA--CAAAGTAGAA a score=9669.000000 s hg15.chr12_random 366819 91 + 590431 ATACATCATTTCCTCAAAATGCCAGAAGAGAAAAAAGGAA-AAACTACCAAAGGGAAGA-------GCAAATAAATTCTACCAGAGTCTTAAGTTTGGC s mm3.chr1 138255155 91 - 195869683 ATATCTCACTTCCACAGAAGTTCTGAAGATCAAAGAAGTA-GAGGTGTCAAAGAGACGA-------AAAATTAAATCTCCCCAGAGGCTCAAGTATGAC s rn2.chr9 61561535 99 - 118059026 ATATCTTGTTTCCACTGAAGTTCTGAAGATCTAATAAGTAAGAGATGTCAAAGAAATAAGGAAAGTAAAAATAAATCTCACCAGAGGCCCCAGTACGAC a score=31669.000000 s hg15.chr12_random 367090 368 + 590431 CTAAGATTATTTTCTTAAGTAAGGTTTGCATTCAGAAAGGAAACTGAAATAGAAGATCTGGAAGAATAATTATTTAATTAGGATGCCATTGCTGGACTTTTTAACTCTTCTGTGTTCATTTTTTTTAG--TGCAAATTCATAACAGCCTCCTCTTTCCT-TACTTAGCATAGAAAACCTTACCATTTACTTTTAGTTTAAAATCTCCTGGATGACTGAAATAAGAATACTACTAAATAAAATACAAATTACTGTAGTATTTGTTACTTTAATGTTATTATTAGTATCTGCAAGAGGCCATAAAAATTATCTTCTTTTTC--CTATTTTGCTTAATATGCTGT-AAAGAGTATT------------------GTCTAAAGAATTT-------------------------------------------------------------AATTGTTT s mm3.chr10 7747373 421 - 130738012 CTGAGGTGACTTTCTTAAGGAAGACTAGCATT---AAAGGAAACTGTACTAGGAAGCATGGAGCAG-AGTCACTTCCTCAGGGTG--AGCGCAGACATCTC--AGCCTCCTGAGTTGATACCTCCCAGC-TGCTTACTGACAGCAACAGCCTCCGTCAGACACTCACCGACAAAAGCTTT-----TTCACTTTGGTTAAAATGTTTCTAGATAAATAAAATA------ACACTAAAT-GAATACAAACGACTA----------CATTTTAACGTCATTATCAGTACTTGCTGGAGAGCATTAGAATTGTCGTCTCTATCTGCTAGTCTGCTTTGGAAGCTGAGAAAGATTATTTTAAAGGTTTTATTCTTAGCCCAAGAAATATTTCAGTAACAACGTTGC-TAGGTGCATGAGGCCCTGGGCTCCCCTTCCCAGCTCCAAAAACAATAATTT s rn2.chr7 60556868 425 + 139049774 CTAAAACGGCCTTTTTAAGGAAGACTGGCATT---AAAAGAAACGGAATGAGGAAATGTGGAACAG-AATCACCTTCTCAGAATG--AATGCAAGCCTCTC--AGTCTCCTGAATTTATCCTTCCCACTGTGTGCATTCACAGCAGTGGCCTTCT-----CACTGAGTGACAAAGGCTGT---GTTTTGCTTTGGTTAAATACTTTCTAGATAAATAAAATAGGAATAACACTGAAT-GAATGCAAATGACTA----------AATTTTAATGTCATTATCAGTACTTGCAGGAGAACATTAGAATTGACTTCTCTTTCTTCTAGTCTGCTTTGGAAGCTGTGAATGATTATTTTAAAGGCTTTATTCTTAACAAAAAAAATATTTCAGTAACAATGTTGCAGGGGTGCATGAGGCCCTGGG-TTCCCTTCCCAGCTCCAAAACCAAAAATTT a score=4564.000000 s hg15.chr12_random 367458 60 + 590431 CATTTC-------------------------------------------TTACCTTTTCATGGCTTTTTTACCACACTT-TTAATTCACTTCCATATAAAAGCt s mm3.chr10 7747977 104 - 130738012 aATATCTATACAGAAACCAGGGAAAACCTCACTCACATTCACTGTCTCGTTATTGTTTGTTTGCTTGTTTACCAGGCTTGGAAGTTCACTTCCACGTGAAGGCA s rn2.chr7 60557478 96 + 139049774 aatatctctacagaaacaaggaaaaAATTCATTCACATTCACCGTCTTTTTATTTATTGATTGTTTGT--------CATGGTAGTTCATTTCCACATGAAGGTA a score=24133.000000 s hg15.chr12_random 373991 199 + 590431 TTTGTCATATATCAATGATTTATAATGTGT-------AACAAAATTGTTTAAGAATGCAAAAAT-TATAATG---TCTC-AATAATTGATGATATTTTAT----TTAACTAAGAACAATGTT-TATATCATGGGTCATGTTGCTAAAAGACCTCCAATTA-------------------------------CCATTGCCAGGCAT----------------------ATTAATTATGTAGTCAGATTTAATATCCCAAT---ACTGTGGAGC s mm3.chr10 7748081 249 - 130738012 TTTTTCATGTGTACATTATTTCTAATGTGTATGAGAAAATTAAATTGTTTAAGAGTTCAAACATGCATAATGCCTGCCTAAACAATTGAAGATAATTTGTTAAATCAACCAAGCAAAACACTATAGAACATGGGTCAAGCTATTAAAA-ACCTCCAATTAGTAAAACTTTCAGCAATAATAATAATTAGTTCTATTGTTAGGCCC----------------------AACAACTGTGCGATTAGATTAAAATCCACAACCAGGCTGTGGAGC s rn2.chr7 60557574 259 + 139049774 TTTAT--------CACTATCTCTAGCATGTATGAGAAAATTAAATTGTTTAGGAATTCAAACATGCATAATG---GCCC-AACAACTGAAGATAATTTGTTAAATCAACCAAGCAAACTATTATAGAACATGGGTCAAGTTATTAAAA-ACCTCCAATTAGTAAAACTTTCAGCAATAATAAAAATTAGTTCTATTGCTAAACCCAATAAAACCGCGATTAGATTAAAATAACACTGCGATTAGATTAAAATCCACAATCAGGCTATGGAGC a score=19675.000000 s hg15.chr12_random 374190 201 + 590431 GTGTCCATATTCCCATTTTACCgaaaggcaaagtacatggccgaggttcacaaaggtactaaactatagggccagcctttgaatcagagtatacctgaatccaaaatccatacttttAACCATTCCTTAATATTACCAGGCACATTTATACAAAGTCTCACTATTATATTTGTACAGGTTGC----TTTTCTTGGTATAATTCAT s mm3.chr10 7748587 186 - 130738012 GTTGTGACATTTCCACTTTTCAGAAAAGCAATGTGTAAGCTACAACTTCAGATATCTACTA------------------TGAGTGAGGGTCTA-TTGGACCTAAAGCCTGTGGTATTGACCGTCACTTGGCCCTCTCAGTCACATGAACATGAAGAAGCTCCGTCAGGAGTGCACAGGTTGCTTTTTTGTCTTTGTGAGATTCAT s rn2.chr7 60560094 182 + 139049774 GTTGTGATATTTCTCCTTTTCATAAAAGTATTGTATAAATTACAACTTCACATATCTACTA------------------TGAGTGAGGGTCTA-CTGGACCTAAAGCCTGTGGCATTGACCATCCCTTGACAGTCTCAGGCACATGAGCATAAAGAAGCTCTGTCAAAATTGCACAGCTTGC----TTGTCTTGGTATAATTCAT a score=84822.000000 s hg15.chr12_random 374391 749 + 590431 AGCACTAAGGGTCCCCAAAGATTCCTCCAATAACTCAATTTTTATTAGTAATTTTTGTCATAGCTCTTACATGGGCCATATTCTAATTCAAGGGGCTCGTTTAATTAAAAATTGACTGATC---TTATG-------------CAGTGTGACTTTGGTCATTTAGACCAACATTAAATTCTAAAACCAATGCAATATCTTCATTTT-TACATATTTTCTCAAAACATTGACCTCCTTTGGGTAATTTCTTCCCTATAA-----TTTGTCTATTTTCCATTTTAATTTTAATTCTAAGCCTAGAATTTTAATTCTAAGCCTAGAAAAGAAACTACTAAGATCATCCTGACCAGAACAGGTCAGTTATCAAACTGAAAAC-ACCAAAATTTGCACCCTTTGCACCAAAATTGTGTATGTCTCCTTCCCCAGGCCCCACTTTCCAAGTGTATGTATCAGATCAACTCCATGCTGCAGCAGGAGGCCAGTAATTCACACTG--CACTG--ATTTTTTTTCTATTTATGACAGCATATTAC-AGCGCTATGGTAAGATTTTTAAAGTTCATGAGCCTCTAGCCTTGGATCAAGCCATGCCGCAGCTCAATCTTTTTCAGTCTTTGTTAGCAGTGCACATCATGTCTAAACTAAAATATACGGAATATAGAGTGTCATGTCCAAATC-ACAGTCTGTAAGCTCAGGTGGGCAAGAAGTACCAC------TTTTTGTATATTTATG-TTTTTATAACTGTGTGATGAAAATGTCATCTCAGTACATTTA-AAGA s mm3.chr10 7749140 758 - 130738012 CGTATTAAGAGTGCCCAGCAATTTCCCCCAAAAATGTTATTTTGTTATTAA--CTTGTCATTTATCCCAAATGGGCAACATATTAACTCATAGGCTTCATGTGATTAAAATGTCTTTGAACCCATTATA----AATTAATTAAAACATGATTTTTGTCATTTAGACTGAAGCTAACTTCTAAAAAT-ATATAGTGGCTATCCTTT-AAAATATTTTCTCAAAAC--TGGCTTCCTTTAAGTAAGGGTTTATCTATAATGTAGTTTGGttttttttttttttttttttttttttttggtttttttcttAATTCCAAATTCACAAGAGAAGCAAGTACAGTAATCTTGGCTACAACA------TTATCAAACTGAAAGC-ACAGTGCAATGCCTTCTATGTAC--AGCCTATGTGAG---CCTCTCCTGGTCCCCAGATTCCAAGTTTCTATGCCAGATACCCCTGACACTTCAGCAG-AAGCCAGTATTCCACACGGTTTTTTGACATTTTTTTTCTATTTATCACAGCATATCACAAAAGCTGTGGTAAGAATTTTACAGTTCACAAGTCTTTAGCCTTGGGCCAAGCCCTCTTACAACTCCATCTTTCTCAGTTCCTGTTGGTAGAGGCCACTGTATCTAAACAGACTTGAAT-GAGTATACAGTGCCAAGTCCACATCTTCAGGCCGTAAATCCAAGTACACA--AAATACCACCAAATATTTATATATATTTATG-TTTTTGCACTGGTGTGATGGGGATGCTATCTGAATATATTGA-AAGA s rn2.chr7 60560649 725 + 139049774 cataTTAAGAGTGCCCAGCAACTTCTCCAAAAAACGTTATTTTGTTATTAA--TTTGTCATATATCTTAACTGGGCAACGTATTAACTTACAGGTCTCATGTGATTAAAATTTCTTTGAACCCATTATGAATTAATTAATTAAAACATGGTTTTTGTCATTTAGACTGAGGCTAACATCCAAAAA--GTATAGTGGCTGTCTTTTAAAAATATTTTCTCAAAGC--TGACTTACTTTAAGTAAAGCTTTATCTATAATGTAGTTT--------------------------------TTTTTATCTTAATTCAAAATTCACAAGAGAAGCAAATACGGTCATCTT-GCTAC-ATA------TCATCAAACTGAAAGCAATTGAACATTGCCTTCTATGTGC--TCTGTGTGTAAG---CCTCTCCTGCTCTCCAGATCCCAAGTTTCTATGCCAGATCACCCTGACACTTCTGCAGAAAGCCAATATTTCTCACGA--TTTTGATATTTTTCTTCTATTTATCACAGCATGTCACAAAAGCTATGGTAAGTGTTTTACAGTTCATGAGTCTTTAGCCTTGGGTCAAGCCATCTCACAATTCTGTCTTTCTTGGTTCTTGTTGGTAGAGGCCACAGTATCTAAACAGACTTGCATGGAATCCACAGAGCCAAGTCCACATCTTCAGACTATAAAGCCAAGTATACA--AAATAGCAC------TTTTTATACATTTATGTTTTTTGCACTGGTGTGATGGAAAAGATATCTCAATACATTGAGAAga a score=8253.000000 s hg15.chr12_random 376081 205 + 590431 ATAAAAATGACAGGGATTTAGGGATAATGGCACTTGCAAATGTAAAATTTTTCCTCTAATTTTGGG-----TCTTTGCTGCTTTCTCACGT----ACATCTGTGATGTACAGACTGTAGGCtttactgttgtgtcccagcag----------aacctagaacgggacctggaaaacagcagacactAATTATGGAGTTAAGTCGTGGGAATCACAGTAACAGAA s mm3.chr10 7750518 151 - 130738012 ATTGAAACAACAGAGATTTGAGGATGGTAGCAT-----GATACTA---TTTTCCTGTAATTTGTGGGTCCTTCCTTAT------CCCATGT----GCATCTGTGAGACACACACTGTAGGCTTCATC----TGGAGCAGCAGGCAAGCCTCCAGCCTAGAAC---------------------------------------------------CGGTCACAGGA s rn2.chr7 60561998 148 + 139049774 ATTGAAACAAC--AGACTTCAGGATGGTAGCAC-----AATCCTA---TTTTCCTGTAATTTTGGGG----TCCTAAC------CTCATGTACTGGTGTTCGTGGAGCACA-ACTATAAGCTGTAAC----TAGAACACCAGGCAAGACCCCAGCATAGAAT---------------------------------------------------Cggtcacagga a score=16765.000000 s hg15.chr12_random 376286 963 + 590431 ATGGAGGTtgtaatgggctgatctgtgttcctcctaaactcata--tgctgaagccccagcccctagttcctcaaaatgtaaccttatttggagataaatgaggttgtctatttggccacttttatctatttggccattttaaataagttaaaattaggctgttggggtaggaccctaatccaccatgactggtatccttaaaagaagaggagacaccggggatgcatacacagaggaaagactaggtgaggatccagggagaaaatggccaactgcaagccaaagaaagaggcctcaagagaaaccaaatctgccaactcttgatcttggacttctatcttccggaaactttgaaa------tttctgttctttaatatcactcagtctgtagtattttgttatggcaaccctaacaaac------AGATGTGAATAAGTATCTGGGCTTCATTACAAAATAGTATTTACAAATTCTAAAGACTGCCAGTTGCTTTTGTAAGCTGAAATTCCTACTCGTTTTATTGGTTAGTTCCTGTGTTTGTTTGGATCTTGCATATGCCCTCATTATATTGGCATTGTGTTATATTTGCAATAATTCACAATAGTTTTAATTTTGCTATTCTAGAA-----TGCTTCCAATTTTGTTTTCTAAATATAAAAAAAAAGTGGTGCATTTTAGGAACTATGTTTTAGTAAATTAGATATTTAGATCTGAAATTCCACATATTGACTCACAGTATTCAGCCTGGGACCCCACATATTTCCAACAGATGTGTTTAGGCTGATTATTTAAATGCTCAACACTTCAAATGTTCCAAGTATC-TTATCTGTATTAAAACTGGTTTCAGTACT--GTCTCAATTTTTTCTTTAGaaaatatataaaatataatttaaGTGAGCACCAAGAAAATGTAGTAGAATGAGTCCTATGTTTCCTTTTTTATGTGATAGACACAGATAACCTGGGAATGAGTTCT s mm3.chr10 7750669 802 - 130738012 CAGGATGCTCCGAGGGACCCAGCTGTGCTCCTCTTAGGTCCATACATCCCAAAGCC-------------------------------TTTGGAGACAGGTAAGGTGGA------------------------------------------GACAGTGAACTGTCAGAA----GCTCTAATCCAT-ACGACTACTGCTCTTGGAGGAAGAGGAAACATAAAGGATGC-------------------------------------------TCGTCGgctag--------------------------------tgcc-----ttcatcttgggcttctcacctccagagttatgagaaaatatttctctgccatctacaatcacccaactggcagggttttatcctggcagccttaacgaaccaagacaCACAGGAGTGAGTATTGAGGTTCCATTGCAAACTACTGTATTCAAATCCTAGTGGTTGTCTATTCATTTTGTAAGCCGACATGA-GACCCTTCTTGCTGGCTAGTTCCTCTGTTTGGTTAGGGTTTTTATCTACG---ACTATATTTATATTGTATTCCATTTGCAGGAATTCG-GGTAGGTTTACTTTTGCTGTTCTGGAACAAAATGCTTCCAATTTTGTTC-CAAAACACCAAACACA----GTACATTTTAGGAAGTGTATTTTGG-ATATTCAATATTTACATCTGAAATTCTAC-TACTGATCCAGAATACTGAGCTCAAGACTCAACAGATTTCTAGGAGGTGTCTGTAGCCTGATATTTTAAATGTTCAACACTTCAAATGCCTCAAGTATCTTTATGGGCTTTCAAATTTTTTTATGTTCTAAACACTGGCCTTTCCTTTAGAAAATATGTGAA--ATAATTT---TGTGAGGCAACAAAAT------TAATTATGCCTACCCTTCC-ATTTCATATGGTAAAGAACTAAGATTTAAG-ATGAGTTTT a score=7142.000000 s hg15.chr12_random 377249 270 + 590431 TAAAG---CTGTTTTTCTTATAACATACAATCTAAACATGCATTGATAAATAATATAAAAATAGCAACAAAATAGAGCCTGCCATGCCAACTCTTAAAATATAGCTAAAAACTGAATTTCCTTAATATTCATCTATTTTGGGAACTAGTTCATCTTTTTTTCCTCTTTGTACTTCAGGTGCACAGAATTGGATTAATAATAATCCGTGGCTTATAACATACTCTCAGCATTGGTAATTGTATGACCCACTTT----TATCTATTTGGCCATTTTTAA s mm3.chr10 7751636 243 - 130738012 TAAAATGTTTGTTTTTCATGTAGCCT--AATCTAAAAATGCATCAGTAGAGAATAAAAGGACGGAAGCAGAATACAGCCTGCCATACCAACTATGAGCATATAGTCAAATACTAAATTTCCTT--------CCCGGTTAGGAGAACA----------TTTTCCTCTGTGTACCTGAAGTCTACAACACAAG-------------CCTTGTGCATAACACGCTCTCATCACTGGTAAGAG-ATGATCCATTTTAATGTAGTTATATATCCATTTTTAA a score=72689.000000 s hg15.chr12_random 377519 1342 + 590431 TAATGTGATAAGTACACATGAATTTTCCCAAAACAAATATTGGGGCTCTGATTGCAACCCACATTCAACTATGCAGTCACCTC-----ATATGACATCCCTCTGAATCTTCAGATTTGAGGCAATAACCAAATTTCATCCCATACTCATTATTCCCTTTATTCC-------CTTGCTGTTGTACACAAAGAATAATTACATATATATGTATCTAAAGGGATATTTTAgtttttaactctataaaatggtatcattaattttttagaacttgctatttttgtgcagtattatattgctaaaatttattcatatttgtaaatgctgtacttcattcattttactactgtgtcatattttaatgtgaatataccacagtttattcatccactctcctactgatgtctatttagattgtttccaggctattccattccaagtggcaatgatgttaacatctttacacatatttttgttgtatatgtaaatgagttttattggatatctaggagtataattctgaagtcatatgatatatgaatgttcaatttttccaaattgtttaatgttttttaaaatgattgcaccaatttgccctccagtcagcgaagaacattcagtggacctatttcctctccaataattgacactatcaggcttttatattttc-ttccaaaagaacagtgtaaatttatgttgtattattatgtttctttgtgttttcatgatcactaatggatgtgatatcgtgtaataaacatctct-tcatatgtttgttagtcatatgagttttctcttctg-----tgtctatttataacttttgctacttttcttactgatttgtagataattttttgtgctcttaacaccaatcctttgtccgttatgtagattgtcaactagtttgtgacagtacttctcacttta--agacatctcttta-atgaactaaagcttttaattttaatatagcaaaatatatgtcttttcttttatagttaacatgttttatgccttatttaagaaatatctttctacatcctagacctaaaaaccattcatctggattatctactaagtgtttaaagatttgcttttgatacttaaatccttaatctatatggagttg-ttttttcatgtagtgtgagggaaggacctagtgt--catgttttCATAGACATTTAATGA---ATTA-TTTACTCTTCAGGCATTGATCTGTAGTTACTGGAAATTATTATTACATTATTCTTAAAAAAACACTCCCAAATTTTACTACTTACATAAAATTCTAATTAGTTATATAATGTTTTCTTAAATGAAAAAAAAT-TTGCATAGTAGGAGTTGAGGTTACCAATACTATCAAATAC s mm3.chr10 7751879 964 - 130738012 ----------------AATGGTTTT---------ATATCTTGAAGTTATACTTACA-----------------TTGTTTCCCCAGcccctcccccttccctt------------------------cccccagcccctcccATAT-----ACTTCCCTCGCTCTTACATGGCTTTCTGTTGCACACA---------------------------------------------------TGTGAGA----ATTATGAGTTACCTAGAA--------------GCAGACATATAT-------------------------------------------------GCTGAGTCATAT---------GATATAAGA--------GCAGCCATTTTT---------------------------------------TCC----------------------------------------------------------------------------------------------------------------------AAAATGTTTAAAAACGTCTAAAATGAGGAGACCAATTTGCATTTCGACCAGAAACAAGCATACAGTGGACCTCTATCCTCTC-AATAGTGGATAGCACTAG---ATTATAGCTTT-CCCTAAAATAAGACTACA-----GTGCAGTAATATCATCTGCGTCTGCTTTTCCGTGGTGACTAATAAACATGACTCGTCACACTGTGCCTTC---CTGTTTCCTGGCTGACCACCTCAGTTTCTTCCTCGATGACATGTCTACCGATGAAGTAATTCATTTTCCAGACTCA-CTGTGTGTGA-TTCTTGTGTTGCTGACATCAGTCCTTCGACAATTTTGTAGG-------------TGTGACAGAACTTTTCATTTTCTTAGAAAGCTTTCTAGATGAACCAGAGTTCTTAATGTTGAC-GGATGAAATGCA-----CATATTTTATAATCAATGTATTTGGTTCCCCATACAAGAAGTGTTTTCCT-AAGTCTATCTATGTAATCCATTTA-CTATGTTTTTCATTAAGTGTTTAAAGTTTTCCTTTTGACGTTTACATCTTTGCTCTGTCTAGAGT---ATATTGTATAGAGTGAGAGGCATGG--CTACTTTTGCATATGCTCTTAGATGGTGAATGAATCAATCATCTATTCTTTAAGCATTTAGCTTCA-CTACAGGGCGTGGCTGTTGAATGAGTCTCATAAAATGATTTCAAATCTTTATAAATTAGGTAAAATTCCAATTATTTATGTG---TTTTTCTAAATGAAAACAAATCTTGCAGAGTAGTACTTAAGGTTGCTCATTTTATAAAATAC s rn2.chr7 60562728 947 + 139049774 ----------------AGTGAGttt---------atatcttgaagttataattaca-----------------tggttttccc-----cttccacttccccc------------------------accccaactcttcccacac-----actgccctcgctctTACACAGCTCTCTGTTGCCCACG---------------------------------------------------TGTGAGA----ATCATTAGTTACATAGAA--------------GCAGATATATAT-----------------------------------------------ATGCTGAGT---AC---------AATATATGA--------GCAGCCACTTTC---------------------------------------TCC----------------------------------------------------------------------------------------------------------------------AAAATGTTTAATAGCTTCTAAAATGATGGCATCAATTTGCAT------CAGA-------------TGGACCTCTATCCTCTCCAACAGACGATGGCACTGG---CTTGTAATTTTTCCCCAAAATAAGACGACC-----GTGTGGTATTATCATCTCTGTCTGCTTTTCTGTGGTCACTAATAAACATGACTCATAACACTGTGCTTTCTTACCATCTCCTGGCTGACCACATCATTTTCTTCCTCGGCGAAATGTCTACTAATGAGATCATTCATTTTCCAGACTGA-CCGTGTGTGA-CTCTTGTGTTGCTGACACCAGTCCTTTGTCAATTTTGTAGG-------------TGGGAAGGAACTTTTCATTGTCTTAGAAAGCTTTCTAGATGAATCAGGGTTCCTAATGTTAATGGGATGAAGTGTA-----CCTATTTTATAATCAACGTATTTGGTTCCCTATACAAGAAACATTTTCCT-CATTTTATCTCTGTAATCCATTTA-ctatgttttccactaagtgcttaaaattttgcttttgacacttaaatcttcgatctgacttgagttgcttattatacagagtgagaggtaagg--CTAGTGTTGCACATTCTCTTAGACAATTAATGA---AGTC-TCTATTCTTCAAGCATTTAACTTTA-CTACAGAATGTGGCTATTGAATGATTTTCGTAAGATGACTTCAAATCTTTATAAATTAGGTAAAATTCTAATTATTTATGTGTGTTTTTCCTAAATAAAAGCAAATCATGCACAGTAGTAATTGAGGTTGCTAAGTTCATAAAATAC a score=20193.000000 s hg15.chr12_random 379030 151 + 590431 AGGCAAGCATAATCATTGCTCCACATATCCACT------------TCTATTTTCATTTTTGCATTCCTACTATGACATAATTTGTTTTAC-CTCATTTTTGTATTAGCTCT--------------TTTGAACGCTGCTTT-AAATGAAACCGAATTAACCTGTACCTTATAGATAAGTA s mm3.chr10 7754667 165 - 130738012 AGACAAGGGTAATCATTGCTCCATATTCCTATTTTCTATTACCCATCACCTTCTACTTTGAATTTTCCACTGTGGTTCAGTTTGTTTTACAATCACTGTTACATTAATTAT--------------TTTGAACACCGCTTTAAAACGAAGTGACATCACTCTCTACCTCACAGGTAAGTA s rn2.chr7 60564634 179 + 139049774 AGACAAATGTAATCATTTCTCCATATTCCTATTTTCTGTTATCCATCAACTTCCATTTTGGAATTTCTACTGTGGTTTGATTTGTTTTATGATCATCGTTACATTAATTACTTTTAATTAATTAGTTTGAATACTACTTTAAAATGAAGCGACATCAATCTCTACTTCCTAGGTAAGGA a score=39790.000000 s hg15.chr12_random 381834 899 + 590431 AAGACAAAGTAGTCTAGATGAAACCCAGGATGTTCATAACGAAAAGCCTAATGGAATATTTCTACACTTGAAAAAGTAGGATATTTCCTTCTGTTAGAGCAACACATCAGCTCTTTGAGGATAACAGCTAACACTC-AGGCTctaagtgct---------cctttaagcattgactttttatctcatttagccattacaactccaggtagtaggtactatcattatcgtgtggttttataaatgaggggga------aataaggcataaagaggttaataacttgagc-taggtcacacagttattttctgatgaacccaagattccaatgtattacatagtccatatatacccaccgtactgcactgcctctGTATAGATTCCTCTCAATGAGTGATTGATAACATACAAAGGGCTAGGAACCACTCACTGTTCCATATAACCCCAATCACCACAGAATTCATTCTAGGGCACTGGGTACATCGAGAAACACCATTCACACTGGCTTGGTGTGAACTGCACCGCATAGGGGTATGCAGCACACAAACAGCATAATCCCACACTGTGACCTGCAGCCCCATCATAAACCATACCTTCTTTTCCATGGCCTTTCTTATGTTGCTTTTCTACCATGGAGAA-------------CC----CTCTTCTCTCATCTCAACAT----------------------------------GCATAAAACCAGTCATCATCTAGCTCATATCACCCTTGAAGCTTTTCTAGGCTCTTCCAGCTACAGGTA----TCTACATATTTCTCCTCTGAACACCT-ATTTCATATTCACTTTATGGACATTTTGAACTACTGCTTAGCATTT------AGATACATAACATTTTGTATTTTACCAAATACGTTTATATACTCAGCCACATTTAAGTTTATCGAGGACAGAAAACAGCTTTTATTCCCTCTCTCAACTGCATACTCTCTCTCT s mm3.chr10 7756274 742 - 130738012 AATATACAGAGGTCCCTATGAGACTCAAGATTTGCACAGCTGAAAGCCTGATGTAACATTTCTGCACCTAAAAATGGAAAGTACCTGCTTTGGGGTTGGTGACCCTCCCACTTCTCG---ATA--AGTTACCACTCTGGGCTCAGGGGGCTGGAGACAACTCTGCACTAGATGCCATTCTGTCT-------CCTTTACAAGTTCTTGCTCCAGGGACCATTACTGTCATGCCATTTTATAA---AGAGGGACTAAGGAATGGAGCAGCAGTGGATAATAAACATTATTGCAGGTCACACAGCCG-TTTCTGAT-----------------------------------------------CTAGGCTGCCT----------------------------------------------------------------------------------------------------------------------------TATCCATGGGATCG---------GCACCCCTTA--GTTATGCTAT---------GCATAATCTCACGTGGCAG--------CCCGTCAAACACCAAAACAGCCTGCTCCCCATCTCTCTTAGGCTGCCTCTCCAATCAGGAAAAACTTGACCTTTTCCC----CTTTacacacacacacacacacacacacacacacacacacacacacCGTCTAGTGTTTGAAACCAGTGAT-GTTTAGCCCATTTTGTCCTTAAAGTCTTTCTAGGCTTTCCCAA-------------CCTCTGTAGCTCTCTTCTGAGAAACCAACGTGATGTCCACTCTGT--ACAAAATGAGCTACTGCTTAGCATTCGCATTCAGTTGCCTAAAATATCCTGGCTTGCCAAAGACAACTACTGACACTGGTGCATTGAAGCTCATGG-GGACAAAGGGCAGTTTTGActctctctctctctctctctctctctctct s rn2.chr7 60566901 674 + 139049774 AACAGACAGAGGTCCACATGAGACCCAAGGTCTTCACAGCTGAGGACCTAATATAGCATGTCTGCACCTAAAATCGGAAAGTGCCTGCTTTGGG-TTGGTGACCCTCCCACTTTACGGTAATA--ACTTACCATTCTGGGCTCAGGGGGCTTGAGACAATGCTGCAGTAGATGCCATTCTGTCT-------CCTTTACAAGTTCTGGCTCTCAGGACCATTACTGCCATG---------------------------AGTAGAGCAGTAGTAGATAACAAACATTATTGTAGGTCACAGAGCAA-TGTCTACT-----------------------------------------------CTAAGCAGCCT----------------------------------------------------------------------------------------------------------------------------TGCACATGGGATTG---------GCACTGCCCA--GGTATGCTAT---------GCATAATCTGATGTGGCAA--------CACGTCAAATACCAGAACAGTCTACTCCCCGCCTATCTCATGCTGCCTCTCCAAGCAG--AAAAGTCGCCCCTTCCCCTCCTCTCTTCCCCCATCTCCTCTC-------------------------CTTTCTAATG-CTAAAACCAGTGAG-GTTTAGCCCACTGTATCCTTAAAGTCTTTCTAGGCTTTTCCAACCTCAGTAATTTTCCTCTGTAGCTCTCTTCTGAGAAACT-GTGTGATGTCCTCTCTGT--ACAAAATGAGCTAATGCTTAGCACTC-------GGTGCCTCATCTGTCCTGGC-TGCCAAACACAATTATTGACACTGGTGCCTTGAAGCTCATGGAGGACAGAGGGCAGTTTTGACTC--------------------------- a score=178169.000000 s hg15.chr12_random 382778 2207 + 590431 CTGTTTGGATAGTTGGTGGACTAATTGATTAATCTATTGAATAAACATTCACCTAAACTTAAATAATCTCCAAGAGTTGCTATCTCAGATGTAGGTGCACACACAATGTGTGGGCCTGTAAGGTAATGGACTGAAGAAGGGAATAAAAAAAAAAGCTTTCACTGGGAAATTGCCCTAAATATAAAAATCACAAGAAATGGAAATGTATAAGAATTCAATCTGAAAACTTTTAAAGGGAGAACAGGCTAACTGGAAAAGTAAGAAAAAAAAAGTGGTCAGAT-------------------CTTTTCAGGATCTGAAAATCAAATGCTTCTCCTCATCATTTCTGTCATTTTTCTTCAGAAGATGTAATATATCCCCCACATTTGAAGTATATATTAAAATTCAAATGGTTAACACTTTATACTT--CTTCATTCTACTTTCTCCCTCTCTCTCTCACACACACACATACATTC-TGAACCCTCCCCCA-----ACACACACACACACACA------CCTACCCCACATAT-------------------------------TCTCAAATCTCCCCCACca--------------------------cacacatacacacacaca-------------------------------------------------------------------------------------cacacacacacacacaca------------ca-cacacacacac-CACCTTTTGAGGGAGAA---CTAGTTCTAAACCATCAAAATCGCTCCTGAGATTGGTTCATGAACTTGGGCTCCCTCTGCTGGGTCTGCAGCAGTACAACAGACAAGTCTGTAGAGTTAGGAGG--TTACAGAACTTATTCATCAAATATTCTCCTGTTTAAACTCGAATTTAAGCTGACTAGCCTACAAGATGCAACAATTTGGAAACAGAAAAGAT----TTAGAAGTTGGATAAATTAGTAACAATAACTCAAGACAAGTGGTTTTTAAACCACTGC-----------GA----ATCAG-----------------------------------------------------------------------------------TATTTTTGCCCCTGCTTATTTCCATTTGTAGAAGAATGGTAGAATTCATCAG-----------------AGAATCGCAAAGATTGCAAAGATAATGATATAAAACTGTACAGAAAAAAAAGCTTCAAGAGATAAGCTCTGGATTACATATGTATTTGTCAGAAATAAATGCAGATGAGTATGACCAAAGGTCATATAAGGTCTCTAAGTAAGATTTCTGAGGAAGTTAAAAAAAAAAGGGAGTTAAGAAGTATTACTAAAAGAATACAAATCAAAGCT---GTTGATAACATCACTGAAATATAT----TAGCCAACCCAAGAGTAGAGTA--TATTGAGCCTACAGTCACACACACCAAGAAATAAAAGAAAATGGAATCACAAAGTGCATTCCACATTTACTAAGGATAACAGAAATGTAACTTATACATCAAAAGGGAAATAGTAAATATTGATTGCTGTTAAAA---GGAAATGTTATCTCTCATTGAATTGATTTGGTGTTTATTATAAAAGGAGAATGGTTAAATTGGCCTAAAACAAACCATCAGACCAGAAAAAAAGAATGAAAATAGATCTAAGACCTTTAAAAATTAGGAAATTATATATAACTGTCTGTAATATTATTTTCCTTAAGATAGGCTAGTATTCAACAATAAATACATCTTAAATCAATCCCAGCGTGATCTTGCAGAATCGTCAAATACACAGGGAATTGGATATTCCACGGCTTAGAAATTCCAGTACAGATATTGGCAGAACCTCTAGTTACTGGTGTAGCCAGCCCATATCCTTTCTCTATTGTCAAATAATGCACTGTTGTAA---AGGGTCAATCAAGACTCCAGCCCATAACTCActacataatttgaaatagccagtgcaaaatgaaaatgcagggccccttgttcaaaaaaagtaccaagaatttcaa-aacagtgaaaacggagcaggaacccaaccaagtcaactcttctaagcacagCTCTTTTAAGATGGGTGATAGTGAACTTTCATGTACATAGAAAGAGGTTGGGGAAAAAGCCAAAAAGGATTCTATGAGCACCTGAGTTGTAAAACAGACG--TTCACTCCCTCTGCAGAATTGTATACCttttatttttttaaaaaattaataattaCAGGAATATGATTGATAGGAATTCACCCTTCCCCTCTGGAGTCCTCACCCTTAGAAATATCCAGGGACTGACTGATTGAAAACAGAGCAGGAACCAAACCAAGCAAACTGTTctaagcacagctcttctaagtatggggccctgtgtgactacacagatcacatgcccatgaagctggcccGGCTC-TGCCCTAGTTTAGTTGAAGGTTAGCA------------------ATAACATA-TCTTCATG-----------CATCCCC------------------------------------AACCTCAGCATTCACAGACG- s mm3.chr10 7757323 2152 - 130738012 CTCTTTGGACAGTTAGCAGATTTGCTTATTGCTCTACTGAGTAAACACCCACCTTTACTTAAGTAGTCTCCAAGGTTCCCTACCTCACGTACAGAT--ACACTCAGTGTGTGAGCCTATGAGGCAGTGGGCTCGAGGAAGG--CAGTGAACAGGGCTTTCA-------------CTAAATATAAAATTCTCCAGATATGGACATGAATAAGGATTTAGTCTGAAGATTTTTACAGAAAG--------AACTGGAAAAGTGAGAAAAGGAAACTTGTTTTATGCATTTAGCGCTGAAGTACTTTCTTGAGATCTGAAAATGAAATGCCTCACTGCATTGGCTCTGCA---TCCCTGCAGGAGATGAAATACATCTTCTGCATTTCAAGTGTCTCCTAAAATGGGAATTGCTAACCTCTTCAGCTTTACTGCTTTCTATTATCTGCACcacacacacacacacacacacacacaaatggacacacctctacatacacacacaaatgcacaca------cct-ctgtatctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctc-agtctccctctctgctctctctctgtctc----agtgtgtctctcattcactcactcattctctgtgtgctctgtgtctttctcttgactc------tgtgtgtgtctgac----tgtctctctctctttttctccctc----cctcccCATATACCCTGATCTCTCTCATCTCAATACCCTCAAAA-TCACTTTTCACATTGAATTTCTAGTTTGGG--CATCAAAACCTCTCCTGAAATTTGTTCCTGAGCTTCGGCACCCTCTGCTGGCTTTGAAGGAATACAACATGCATCGCGGCAGAATAGGCAGGAATAGGGGAATTGGCCGGT------TTCTCCTGTTTGAACTCCA----TAGTCAACTCATGTA---------------TGGAAAAACTAAGGAG----TTAAGACTTGAATCAAACAGTATTTAAAAATCAAGACAAGAGGTTTTGGAGTCACAACTAAAAAAAAAAGAAATCATCGA-------------------------------------------------------------------------------------TTTTTGCT---------CCCTATTTGTAGTAGAATAGTTGAGTTTAGAAA-CTGGGGAAGGCGGGCCGGGGAGGCAACAGTCACGGCGATAATAACAGAAAGCTGTTCAGAAGAAATAGATATAAGAAATAAGTTTGAGCTTGCATATGTGTTTTCAGGAATCAAATGCAGATGTGCGTGATCACAGATTATGTAAGGTCCCAAAGCCAGGTTTCTA-------TATAAAGAGAAAGTAGCTAACTAATATTACTGAGGGGCTAAAACACAAAAAAAAAGTTGGTAATAACA-TGAAATATACTCAATACCCAACCTCATTATACAGAAAGTATTGA------AGTTGCATGCAT-----AGAAAAATATCCTAAGATCACAAAGTATATTCCACATTTAATTCACATAGTAGAAATGTAACTTACACATAAAACAGGAAATGA----CATTGATTCCTGTTAAAAAAAGGAAATGCTATTTCTCATGTAATTGATCTGGTTCTTATTATAAAAGATG-GTGATTCGATTGATCTAAAATGAACAATCAAGCCAG-TGAAAGGAGTGAGAATGGCTCTAAAATCTCTAAAACCTGGAAATTCCTATC-AATGATCTATAAT-TTTTTTCCATCAGGACTGGCTAGTATCCTGCAATAAATATGCCTTAAATGAACATCAGGATGGTTGTATAGAA-----GAAT-CAGGAAAAACTTTAAGTTGTTGGGTTT----TTTT-----------TTCCCAGAATCAT---------ACATGGCAAAATCACCCCCTCTCTCCATCACCGAACA------TGTTGAAACAGAGAGTTAGCTCAGATGCCAAC--------CAACACATGCCTCAAAATGCCCAG--TACAAAGAAAAGGTGGAGTTTCATATTCAAAACA-------------TTGA-AATGTTAA----------------------------------------------------------------------------------------------------------------------------TTAAATTTTAAATTGAATG-TTTTCTTCCAAATGCAG----------------------TAGAAACT---GAATTATGGAAA----ACCGGTAGG---------TTGCTCACAGGAAACCTGGATTTT--------------------TAAATGCCACCAAAGCGGGAAACCAACCAAGTAAACTCTGGCAGACA---GTCCCTGAAGCCTGTGACCCTGCAAGACAATTCAGATCATATGCCGATGTAGCTGGCCCTGCTCACTCCCAAGGTTAACTGGAGGTTAGTATGCACAAGCATACTGATGACATCATGGTTTCCATGGTTTCATCATCTCTCCCCAGCATGTACTACCATACTGACCTCAAACTGGTTTCTAGCCCCAGTGTGCACACGCAT s rn2.chr7 60570931 2214 + 139049774 CTCTTTGGACAGTTAGCAGATTCG-TGATTGATCTATGGAATAAACACCCACCTTTACTTAAATATCCTCCAAGCTTATCTACTTCACATACAGAT--ACACTCAGGGTGTGAGTCTATGTGGCAGTGGGCTTGAGGAAGG--CAGGGAAAATGGCTTTTATTGTGTCACTGCCCCAAACATAAAATTCTCCAGAAATGGACCTGAATAAGGATTCAGTCTGAAGAGTTTTACAGAAAG--------AACTCAAAAAGTGAGAAAAGGAAACTTGTTTTATGCGTTTAGCATTGAAGTCCTTTCTTGAGATCCGAAAATGAAAGGCTTCTCTGCATCAGCTCTGCCATTTCCCGTCAGGATGTGTAATACATCTTCCACATGCCAAGTGCCTCCTAAAATGGGAATCGCTAACCTCTTCTGTTTTACTGCTTTCTATTAAC--CTTCACAGGTacacgcgcacgcgcacacacatgcacacgcgcacacacaggcacacacacgcgcacaagcggacct-ctgtctctgt------------------------------gtctc-atcctc--tctctgctctctgactgtctctccgcgtgtctcactcgctccctcaCTCATTCTAAGTGT-CTCTGTATCTTTCTCTTGTTTCAGTGTCTGTGTGTGTCCGCCAGTCTGTCTGTCTCTCTTTTCCTCCCTCGTTCCCTCCCCATATACCCTCACCTCTCTCATCCCA-CACCCTCAAAACTCGCTTTTCACATTGAATTTCTAGTTCGGG--CAGCAAAAC-TCTCCTGAAATTTGTTCATGAACTTCGGCGCCCTCTGCTGGCTTTGAAGTAATACAACAGGCATCTCTGCAGAATTGGCAGG-------GAATTTGCAAGT------TTCCCCTGTTTAAACTCAG----TAGCCAAGCCGTGTA---------------TGGAAAAATTAAAGAAAAATTCAAGACTCGAATCAAACAATATT-AAAAATCGAGACAAGAGGTTTCGAAGACACCACTACA-------GAAACCATCGGGGTTtttttgtttttgtttttgttttttgggtttttgttttttggggtttttttggggtgttttgttttgttttgttttgctttgttttTGCT-------ATTCCCAATTGTAGTAGAGTAGTTGAGTTCAGGAAGCTGGGGAAGGAAATGGGGGAAGGCAACAATCACAGAGATAACAATGGGAAACTGTCCAGAAGAAATCGATATAAGAAATAAATTCCAGCTTACCTTTGTGTTTTCTGGAATCGAATGCAAATGTGTATGGTCATAGACTATGTAAAGTCCCAAAGTATGGTTT-TA-------AATAAAGAGGAAGCGGCTAACTAATACTGCTGAGGGGCTAAAACACAGAAAT---GTTGGCAATAATGCTGAAATATACTTACTACCCAACCCCCTCATATAGCAAAGATTGA------AGTTACATGCATT----AAAAAAATTCCCTAAAATCACAAAGTGTGTTCCACGGTTAATAAACATAGCGAAAATGTAACTTATACATAAACCTGGAAATGG----CGCTGACTCCTGTTAGAAA--GGCCATGCTATTTATCATTTCATTGATTTGGTCCTTATTATAGAAGACG-GTGATTCCATTGATCTAAAATGAACTATCAAGCCAG-TGAAAGGAATGAATGTTGGCCTAAAATCTTTAAAACCTGGAAATCCCTATA-GATGATCTATAAT-TTCTCTCCATTAATACTGGCTAGTTTTCTGCAATAAATATGCCTCAAATGAGCCTGAGGGTGGTTGAATAGAA-----GAATTCAGGCAAAAATTTAAGTTGTTGGGTTTGGTTTTTT-----------TTTCCAGAATCAC---------ACACAGCAAAATCACCCCCTCTCTCCATCACCAAACG------AGTTGAAACGGAAAGTTAACCAAGACGCTAAC--------CAGCACAGACCTCAAAATGCTCAGGGCACAAGGAAAAGGTGGAGTTTCACATATGAAAGA-------------TTAATAATTGTAA----------------------------------------------------------------------------------------------------------------------------TTAAATTTTAAATGTAATGGTTTTTTTCCAAATGCAG----------------------TAGGAACT---GAATCGTGGGAA----AATGGCAGG---------TTGCTCACAGGAAACCTTGATTTT--------------------TAAATGCCACCGAAGCAGGAAACCAACCAAGTAAACCCTCCCAGAGA---GTCCTTGAAGCATAGGACTCTGTGAGAGAATTTGGATCATATGCCGATGAAGCTGGCCCTGCTCACTCCCCAGCTTAACTGGAGGTTAGGA------------------ACAATATACTCTCCATGGGTTC-----CTGTCCCCGGCGTGCAAAAGCATGCTACATTCAACATGGCTTCTATCCCTAGAGTGCACAAGTAT a score=120821.000000 s hg15.chr12_random 384985 1580 + 590431 AAGACACTCATCTTACCGTCGTGA-AGAATTTCCTTT--CAGAGAGACATCTTTACTAAAACGGTTCAGTTTAGTTTAGTTCCCAAATGCTAAACGGTTCAGTTTAGTTTCCCAAATGCTCACTGAACCTGTTAATAGGGCATATTTGTGTTCTGTCTATCCAAGTTTGGTATGAGAGACAGAGCACATGTTTAGAGAACCTAAGATAACTCCCGCAGATATTTTTTTTCTTTTGTTTCCTGTgaggagtcgcacaacttaagttgttaaaacacaa--tcttcagcgtcgaactgcctgggttcaaattccatctccaccactgaccacctgtatgactt--tgaacaagttacttaaactttttgtttgagtctttctttaaactttctgagtctctgttaccactagcagataataatagtactactcatagggttgtttattgggatatactgaggcattatttataaagagtttaactcagtgcttggcatataataag---tgAATCTGATATTATCATCATATAATAAATTTTTTTCGCATATATTAGAATCCAGATCACGGAAAACCAGCTGGTTGTCTGTGGGCCACTTGGCATTTGAAAAC-CAGTTGT-------------------------CTTAG------------------TGTGGTTTAAT--------------GGATTATTC---GCTATAAAATAATTTGAAATATAGCTCCCCATATTCTCCATATTTTAAAAGTCTTTATTAattcattgattttataaacatacattgattctctactcgctgacaagcattatgctgaatagtagggatgaaaagatgaaaaagattacctttctgccctaaatgagctcaccaaccagACACTTAAGTGGATAATTTTAATACAATGTGCCAAGTGCATCAGCtgttgggagacaattctccatgggtggctcccatttctgcactttccaagcaaaggcattaacatatatttcgttccagattagctgttcaggaatgtttttatgtcaaactgccttggaaggtagaaatagtgtctctttccagggcaga-aggcaggtttgttttctcactaggataataaagat-----attttttctttccagggtaaagtttgagcaggtttgctggcatccttt-tgaaaacatggaggtttccaaagtttgagattcttccgttgtgccacaaaccccctctatgtgcaTAG-------------------------------------------------------AAGGGGAAAGTTGATA-----------TTCCATGCTGAGAGAATCAAGGTATGAAACAGCATAGTATGAATGCATAAGTATAAACGATGCAGTAATGCTGACAAATTAGAGATG--------AGATGAGAAGAGGGAAGAGATGACGCCGGAGAGCCACAGAAGGACAGAACCTTGGGGACTTTACAGG----CCAGGTATAAACTTACTTCATAATAATCATTTAGCTAACAATTTTACAATTATAGCTCTTGAAAAGTTATGCCAGTTTTTGAACAAATCTTTCTTTTTCAGTAGAGAAATCTTTTCCCCCAAGATCCACTAAATAAATACA-CATAAGACATGATATAGTAATATTACAGTTTCAGGGAGACATGGTCACCCATGTACTTGACTAGCCAGAGAATATCTTATAGGACACATTTGAATTAAACATCACATTTG s mm3.chr10 7759475 1543 - 130738012 ACTGCCCTAATCTTACCTTCCTGAGAGGATCCCCTTTGCAAGTGAGACTTCGTGAGTAAAGCAAAGTATTTCGACTTGGTT-------------------------GGTCCCTAAATGCATGCTGGCCCTGCTGATAGGTTGTGTCCTGCTCCAATTTA---------GTTGTGAAA---ACAGTATGAATTTATAGAGCCTGATATTACCCATGC----ATCTTTGTCATGTCTTTTCCTTTGAAAAACTGTACTCATTAAACTGTTAAAAGAGAGAGCTTTAGGCATCAAACTCCATGAACTTAAACCTGATTTCTACCACCGATCACCTGAATAACTTAACAAATAAATCACTTCAA-ATTCTGTATAAATCTTTCTTCAGACTTCCCGAGTCTTCATTTCTCTTAGCCAAGGATAACAGCACATCttgtaaga-------------tatagtgaagtattgtttatatagggcttaactcagagattgacacataataagcactgaatTTCATATT--------------------------AAATATTACAGTCTAGATTATACAAAACCAGCTAGCTGGCTGTAGGAGACTAACCACTTTAAAACACAGTTATGTGAGCCAGAACTGATAGCCCGTGCCTTAGGATAACAAGTTCAATACTTGTGGAGGAATACATGATGATAATCAGGCTAGCCTGGGCTCTAGAACCATGTTTGGTATAGC-CCACACACACACTATATTTTAAAGGTGTTTATTTATGTATTCATCATACATATGTG--TTG-TTCTCTTCTCTGGAATAAACACGATAATACATAA----AACAAAAAGATAAATAAGATTATGTGTCTGTTCTAAGCAGACCCACCAACCAGACCTTTACATGAGTAATTTTAATATGATGTACTAAATGCAAGAAGtattgaaaaacaattaccaatgaatctttcccacttttctactttcc-----aacacattacttgatatttcttttcagattaggtgttcctgaatgtttgcctgtcaagcagccttgtaagatagaaatggtgtctctcttcaagagaga-gggaagatgtgttttctCACAGGAATAATACAGACAGTATAGTATGTCTTTACAGGGAAAAGTTAGAACGGGCTAGGTAACAATCCTC-TTCCCAAACTGAGCTTTCCAAAGCCTCAAACCTCTCTGCTGTGTAATAAACTGATTGCATGTGCCTAGTGCATTGTagagaagtggagaaggaaaggggaggagagggaagaggaggggagaaagggggaagggagaggaggggaggggaagagaggaagggagaagagagggaagaaaggggaggagagg---ggagaagaaagaagggagaggagagg-tgagaaggtagagaaaggggagaaggtagagaagaggggagaaa-------ggggag--atgggaggatggaaggggagggagaggggaggaggcagagg--------------agaggagCGTCTGTGCAAAGGA----------ATAGCGGTTGAAA----ATACTAGACTACAG------------TGCACATGAGTGAACAGTCTGGCAGTGTGTACAAGTAAGGATGAACA-CAGGAAGCGAGGCC--------------ATGCAGAGAGACGG-------CGGAACCTTG--------GAGAATTCCATATG--------CTAAGTGGAAA-------CTG s rn2.chr7 60573350 1448 + 139049774 ATTGGCCGCATCTTACCTTCATCAAAGGATCTCCTGTACACGTCAGACTTCATTAGTTAAGCACAATGTCTCAGCTT---T-------------------------GCCCCACAAGTGCATGTTGATCCTGCTGATGGGGCACGTCC-GCTCCTGTTTA----------CTGTGAAA---CCCGTATGAATATACAGAGTCTAATGTT-TTCGTGC----GCCTTTGTCCTGTCTTCTCCTCTGAAAAGCTCTACTCATCAAACCATTAAAAGAGAG--CTTTAAGCATCAAACTCCATAGATGGAAACCCGATTTCTACCTTTGATCACCTGCATAACCTGGCAAATAAATGACTTCAA-GTTCTGTATAAATCTTGCTTCGAGCTCTCAGAGTCTTCGTGGCTCTTGGCCAAAGATGGCAGCACATCTCGTAAGG-------------TTTAGTGAAGTATCGTTTCCATGGGGTTTAACTCAGTGCTTGACACATAGTAAACATTGGATTTAATATT--------------------------AAATATCAGAGTCTAGGTCATACAAAACCCGCTGGTCGTCGGTGGGAAACTAACCATTCTAACACTCGGCTGTGTGAGCTCAAACTGAGAGCCTGTGCCTTAGGACCACAAGGGCAAGGCCTGTGGGGGAGT------------TCAGGCTAGCCTGGGCTACAGAAGCATGTTTGGTATAGC-CCACATATTCACTATATTTTAAAGTTGTTTGTTTATTTATTC-----ACATATGTGCATTG-TTCTCTCCTCTGAGATAAACATGATGATCTATAAGAACAATATAAAGTTAGGAAAGATTCTATGTCTGCTTTAAGCAGGTCCAGCAACCAGACCTTTACATGAGTAATTTTAATATAATGTACCAAGTGCAAGAAGtgttgaaaaacaatttcccatgaatctctcccatttttctactttcc-----gacacattacttgatatttcttttcaaattaggtgttcctgaatatttgcatgtcaagcagccttgtaagatagaaatgctgtctctctccaagatagaggggaagatgtgttttctcacaggaatgataatgac-----agtatgtctttgcatggaaaaattagggcaggctgggtaacagtcctcttttccaaactgaggtttccaaaggcttaaacctctcttttgtgtaataaactgactgtgtgtgcCTAGTCCATaggaga------gaggagggaagggaaggagaggagagggtaggggaggagagggggaggtaggagaggagagagg-agagaggaagggagaagggagg------aggggaggggag------------aagaggggagaggggagg-------------------------ggaagagaggagaggagaga-------gagga-----------------------ggagagcagagg----ggagg--------------agaggagagTCTGTGCAAAGGA----------ACAGTGGTAGAAA----ATACTAGGTTATGA------------TGCACATTAATGAACAATCTGGCGGTGTGCCCAAGTAAGGATGAACGTCAGGAAGCAGGGCC--------------TTGCAGAGAGA----------CAGAACCTTG--------GAGAACTTCATATG--------CTAAGTGGAAA-------CTG a score=519718.000000 s hg15.chr12_random 386571 4577 + 590431 CCCAAACACTTCTTAAGTAAGTTGAAAAGAAAGTATCAGTCTATTATACATATATGTATGTGCTAGTTTCATCATGGGTTTATGTATTAC-----------------------TACATGTGGTCTCAAGTCAGGCCTTTATTTTGCCCTAAAGGTATGCTATCAGTTACAAAGTAAAGTTTGAGTGCAAGGTTATCAGAAACCCAAAAAGGCTGCTGAAGGATTGGTTTAGAAAACGGGTCAGA-AGGAAGATTGCACCTTCCGAAGAATGATTCAATTGCACCCCACCCACCTCCATCATTCCCTACCCACTCCTAAGTCTTTCCTTTCTCCATTGGCAGGTATAATAAACCTTTATTTT-TTGTAGAAATTGGACTTACTT--ATTTTTGCATTCTTGTTGTTGAGTTATATACACTCATTTTCAGTATTGAATTGCTATC--------TTTTT-TCTGTGAAAACTGGTT----CATCTTAAGTTGTGACAAAAT-CCattataatttttc-ttattaaaattaataaaaGTTTTTACCTTT-AGTTTTTCATTTAGCAAAAAGTTTTTCAGAAATGAATTAAAGTCATTA-ATGGGGGATGGACGTACT-TTGAACTTCACGGTAGGCTTTGAGGAGACCATGAAGGTCTTAAACACAAGGGCTTGAGCAAgttatgagccagtgctcccaagtcaaaatgcctggggctaaaatgtgtctctgccacattctaggtatgttacctagagcaagtttcttcttgtgccttgtctttcttgtctggatttcttgtctgtgaaataaaggtaataatagttctaatatcatactgctgtaaaaatggaaagatttagaaaaataccaagtacatagtaag-------------------tactcaattaaatgttgTCTGCTAATA-TTATTATTTTCTTCACATTTTTAGTGTCTGTAATTCACACTGACAGCACAGTGGGGAACACATTTGAGGGTATCAAGACCATCAAGAAAGAAATCCATGGGAGGCACAATCAAGGCAAGAAAAAAAATGGGTAGGGAATAagaagcaagcatatggtggaaaataatgtgttttattttggacatgttgcgattaaggtgcctGAGTAAAAT--TCTTTTACTTCT-------ATCTCAGCAGTTTGTTCAGGTCAATTTTATCACTGCCTTCTAGGACAAAAAAGA----TTAAGTCCAATTAGGATTATGGTTTGAGATAGAAACAGAAATAATA--TAGGTTCAAGAATTTTCATTGTCTATTCAATGTTAATCTATTCAGGG-AAATGGTCCTAGAAGCCACATGCTTGTTATTGTTAACTGTGACAAAATCAATGCACTGGTTTTGTACTCAGATAATTCATTTCCTTGGAAACTC-AGAG--GTTGTGAAACAAACATAAATTAAGCTTGTGTTTACCCTGCCTTTCCCAAAGCTAATTATTCAACATAGCTGAGACTTAAGAGTTTCTAACAGAAAGGGCTAAAAACAA----ATCCAGGTAAAGAACAA----GAGGCCAGCACAGGTGT---AAATTGCTTTCATGCTT-ATTTAGCCTTTTACCACGTATATCTCCCCACCACTCCTGTTCCGCTCACCATTCTCAGTACTGCCCTC--TCCCCGCTCTCCCTTCCCTGTCCCTGACATCTCTTTCCATagctgtgcaggatggcaaggactattcataattcatgtttatgccccttgttcccagaatagcatggcacatattaggtgtttaatatgtgcttagttaaaaaggaatCATT-GTTGCATAAAGCCACTTCCTGATGATAAGCTCCTTAATCACCTCATAATTGAAAACGTACTTCCGTGGATAAGATCAGGGTCACATAACAGGCAGTTTCTATTGTGTAAGTCTGTATAGTTGTAAATACCATACATTAAATCTGAATCCATGTGTGAAAGAGGTTACTGCAGACACATAAAATTAATTTCAGTCTCATGCTTTAAACTTTTATTATTTTTCAAATAA-ATCAGTAAACAACATCATAAAAAGTTCTATCTTATTTACTGCTCTAGCCTGAATGTGAAGAAGACAGTCCTCGGTAAATATTTAAGTCACTGACCAATAAATAGATTCCTCTGGTTTTCTACCCAGAAGCAGGTATTTTTCTTTTTTATTTTCTTGGACTGTATACACAAAC--TTTATCTAAATGGCAGAAAAAATGTTTT-TCTTCTTTTTTAGGTTCTCCTGGTAACCTAAAAATAAAAGCA-TAGTACACTGTAATAACAGCAGTGCTGAGAGAAGTACTCTTTCAATACCATACCACCTATTATTTTTAAAGGAGATTAAAAACTCATTAAGAAAGATCCAGTTGTATTTCCATTCTGTTGTAATGTGAAAAGTGAATAATTTTGTCTATAAGAAGTAACA-------ATTCTAACTCAAATAACTGTTATGACATAAGAATCAATTGAGCCTCTTCAGATAACTATACCACAGCATAACGTCTCTACCCATCTGGCAATCAGGAATCTCCACAAACCAACATTTCTGCAGTTCACCGATACAGTGGTAATGAACGTTGACAAAGACACTGAAGCACTGTAAGATGCTAAATTGTTATCTAAATCACCAAAAATGCTCACTGTCATCTTGT----------AATTTTACTAAATCCTAATTTAATTTTAAAAAATGTT---AAGTGCAGGGTagggtctctcaaattcagaactactgacattttggaccagataattatttgctttgaggaccattagtgcacagtaggatgcttagcagcattcctggacttcacccacgaaatgcttctagcacctcttcctttcatccccatgacagtcaaaaa---tgtctccaggcattaccaaatgtccgctatacggcaaaatactatctgtggtgagaaccactgCTGTACAGTTTATAATGTGTGGCAACTCTTGAAGATCCAGAATTCTAAAACATACCATTTCTCAACCATTCTGGATAAATAATAAGTTTTCATGTTATGTTTTAGTAGCACTCCATTACCCAGCATATCAGATTAACCCATAAATCCCATTTCCCAGTTATAACA-ATGATAAACATAAATCCAAAGTACTTGCTCTATTCAGGAACTTAACTTTCTTACCTTTTAGCAGCTATTTTTAACAGTAAATTATAAGACAAGGGAGAGTTCCTCTGGTAAATTGCTTTCATCTTCCCAAGTGACTGGAG-GCCTGAGGGACTGTACAACCATAGTTGCAGCCTAACACATAATGTCCCCCTTAGCATTTT---CCTTTACTCTCCGTAAACAAAGTAATTCACATCTTTTCGGCTGCTATCAGGAAGACTTTAGACTTTCTCTTGCTGTTGCAGAAACTCATATGAA--GGAACAAATTTTGCAGAGAAGGAAAAA-CTTTATATTTTTGTTCAAAATTAAAGTAATGAAATTGAAAT-ACACAATTCAAGGG-GGTAAGGAATTAGTGGatatattatattaatataaattaatattGCAAATAAAGAAAGA-CCAGTTATGAC-ATTTTTGCTGGCTAACCCGCTCCCCAGGGTGTATGGGGGTAGGGAAATGAATGAAAATTAGAGTTCCTTATTATTTCAACTTTGTGACTATTCACATGTGTTCCTCTTTTCGTttcactggacatttcctgagtacctactatgtggcaggcactgtgctaggGACATTCACAGCGGTTGACAGTATTTCCACACATAGATCTATATTACATGCTCCACATAATGGTCTTCTCTAAGTGATACTTGAAATTCACTGACCCATATTTGATCTGTTTTAAGTGTTCTGATTTTCAAA---------CACAATATGTTTCTTTGAGAGGGACATGCCTATTTTTGGACAAGGGTCAAGAAAGGGAGAAGAGA--GGAGAGAAAATGGCATGTTGAATAACATTTTATTAAACTGTGAAAATCTCTTTCTGAACAAGAAAGCGAAAATCATGTCAGTGGCT-AGCAAACTGAAAACTTGACAAGTGATAAGCATCAACAAATTGCTTAACAAAATGTTAGCTACTGATTACAATGTTGATGCAGAACGGAAAAAGCCAGCTGACATAAAATAACATGTTAAAACTGAAAACCGCACTAATGAAAAGGGACAATGCTCTATAGCTCATTGGCTTTTGTTGGGGGTGGGGAATGGCACATATGAAGCAATGCAAAAACATACATGGCAGTT---CACTGGAGTAGCTAGAAATTGAGGGCACAAAAGCAAAATGTCAGAGCCCATCCTCTGCTAAGTAATTATAAAAT-AAATAGATCACCTACAACCCCTTAAACTGTAGGGACT--CTGGGTGGCATCCACACACAGAGAAAGAAAAAAGAAGTAACATTTGCAATTTCTCTACGCACTTAACCTTACCCAACAGCAAATAGTTAGCTCCTCCCTATTAAGGGCTGGATGCCGGGGCGGCGGGTTGCTATGTATAATCAATTATTTTGTTAAAACATTTAAAAAGTCCTGGAATTACAGGGCTTCAGGCATGTTACCTGAGTAGTGTTCCACTAATTATCTTTGAAAAAT--GTT--TTCAATTGTGCTCCTGCAACACTCCAGATTGGCTTCCCAGGCCATTTCCAAGACCACTTTTGAAGAGTGGCCCTGTGTGTACTGCACCAAATACATTAT-AACAAAGC--AATAGAA s mm3.chr10 7761024 4346 - 130738012 --CAGAC----------TGGAAGGAAGAGAAAACACCGGCCTGT------GGTTTATACACAACAATGTCTTCATGAAACCGAACAGTAC---TGTGGGTCAAGTTTAAAACTCAGATATGGT-TCAAGTTCAGCCTCCTTTTTA-CCTGATGGTGTACCATCAGATGTAAAAGGAAGTTTGAGTACAAGACAAT-AAAAGCTCAAACAA---GCTGAAGACTTAGGC---ACAACGTGCAAGAGAGAAAGAATGCACCTTCCAAAGAAAGCCCTCATTGTCCCACACCC-CCACTGCCAGGCT---GCTTCTCCTGGATCCTTTCGGCCT----------------------TTTATTTTTATGTACAAACTGGATTTCTTT--CCTTTTAAGGTGTTGCTTATTAGTTATACAGACCTATTTTCAATGGTAAATTGATCTCCCTTATTTTTTTAATCTATGAAAACTGTTTTGGGTGTCTTAAGAACGAATGGAATCCCATTACAATTTCCCCTTATTGGGATTAATGGAA--TTTTATTTTTTAA-----CACTCAGCAATAGG-TCTTTGAAAATGAATCGAAACCGTTACATGACTGACAGATGTAACCTTGAATTTTGTGACAGGCCCTGGGAAGCCAGGAAAGGTCTGAA--TCAGAGACT--GGCTGTTTGTGTTTC--TGTCCCCTCTTCTGACTATCTGAGGTTGAAACCGGGTTCCAGCACCCACTGG--ACGGTTTCTAGAACTAAGGACTTT-----------------------ATGTTTTTGCCGTTAAGTTATAGGTAATAACAATCCTGATATCACACTCTCCTGGCAATGGAGAGGTTTACTGAAA-ATTAAAGGCTTAGCAAAAAGGC-----------------------AAATGTTATCTGCTAATG-TTTTTATTCTCTCCACACATGCAGTTTCCCCAGGTCACTCAGATAATAACACAGAG-ACAGACTTGAGGGGCTCA--GTTCTGAAGAAGGGAATCTGCAGGAGGTGCCATCAAGGCAAG---AACACTGGGCGGAGCAGAAGAAGTTAGCGTATAGTGGGAAATAGCAGGTTCTATTTTGGATACATTGAGATAAAAATGCTTGATTAGTAGTGTTTTTTCTTTCC----------TCAGCAGTTTGTTCTGGTCAATTTTATTACCACCTTCTAAGACCAAAAAACCACTTAAAATTAAATTAAGATTATACTTGGGAATAGAAATGCAAAAAGTACCTAACCTCGAGAATTTTCATTGTTTATTCGATGCTGCTCTATTGGGAG-ACACAGTCCTGGCAGCT---TGCTTGTTAGTGTTAACTGACA-AAAATCAATGCACTGGTTTCGCACTCAGATAATTCATCTCCCTGGAAACTCCAGGGTTGTTGTTAAATGAACATAAATTAAGCTTTTGTTTACCTTGCCCTTTTCAAGGCTAATTAATCAACAAACTTTAGTGGTAAATGTCTCTCACAGAAAGGGTTAAAAACAAAGAGATCTAGGTAAAGACCAAGTAGGTGGTCATTGTGGGTGTGATAACTTTCCTCTATCCTCGGCTTCTCCTCCTACCACATGGGAGCC----TCACCCCTGT--TGCCCACTGTTCT-----CTGCCCTCAACCCCTGCCCTGCCCTCCCTC--------CTCCTTCTCCAAAATCACAGGGAATAACAGGGACTGCTCCTTATTCACGCTTATGCCCCACGTTCCCAGAATGGCAGGTCACATATGAAGTGTCTAGTGTGCACTTGACAAAGAACGCTACATGGGCTGCATAGATCCACTTCCTAATGATAGGCTTCATAATTAACTCTCTACTGAAAGAGTGAATATTCAGATAATGTCAGGGCCACACAACAGGCAGTTTCCATGAC----GTCTCTGGAGTTGTAAATCCCAT-CATC-------------TGCGCGCTCAAGGTTGCTACAGATA---GAAACTAATTTCAGTCTCACGCTTTAAACTTTTATTATTTTCCAAATAA-TTCCATGAACAACATTGTAAAAGATTCTATCTTATTTACTGCTCTAGCCTGAATGAGGACAGG--AGCCCTTGATAAATATTCAACTCACTGAGGAATACACAGATCCCTTCAGTTTTCTACTCAAAAGCAAGTATTTTTCTCTTCCATATTTTTGGATATTTCTCAGAAATAAACTATCCAAATG--AGAGAGAATTTTTTGTCCTTCATCTTTGGTTCTCCTAATAATCT-AAAATAAAATCAGCTGAATATTGTGATAACAGTTGTGTCAACAACAGTTCTCATCCAAGCTCACACCA-CTGATATGCTTGTAGCACATTAGAAAGCCATCAACAAAAATCAGGCTATATTTTACTTACACTGTGATGGGGATCGCAAACAACCTTCTCCAAAGAAAGAAATAAGTGGCCATTGTAGCTCAAACAACTAAGACAAAAAAAAAAAGAA-TGAGCCTCCTCATATAAGGGCACCACCAAATAACTGCCCTATTTTTCCAGCAACTAGGCATCTTCTTATGCCAACAAGTCAAGACGCTACCAATACTGTACCAACTCGTATTAATAAAGATG-TAAAGCCCTATACTATGCAGAATTATCATGTAA-----TAAGGAGGC-CTCTGCCATCCTCTTTTCTAATTGAACTTTGTCAAATTCTACTTTGATTTTGTTTAATATGCCAAACTGTCAAGGCAAgttcctctaactcagtgctgttaaca--tcagaacagatgattctt-gttacaactct--tctgtaggttgtaggatgcttagcagcatcactgaaccacaagcattaaatgctaacagtacctctccttctcttcttc-caatattcaagaaaagtgtttgaggacattgacaaatgtcccctgga-gtttaagtttgctctat-ttgagaaccaTAGCTGTAGAGGATACAAAGTGTAGCAATTTTTGAATATCCAAAATGCTCTACTGTTCCGTTTCCCAACCATTAGGGATAAATGAGAAGTTTGTAAGTTATGATTTAGTAACACTCCATTAAACAGCATATTAAATTAACTTATAAATCCCAAGTCCCAGTTATAACAGATGATAAATATAAATCCAAAA---ATAGCATGCCCACGAACTTCACTTTCTTACATTTCAGCAGCTATTTTTAACAGTAAATTAGAAGACAAG-------------AGTAAATTGTCTCCATCTTCCCATGTGGCTGGGGAGCCTAGGGGA--------------------CCTAGAACATATTGTGTCTCAGAGCGTTTTT--CCTTTGCTCTGAGTAAACAAGGTAATTTGGGTCTCTTTAACTTGTGTGGAGATGCCTTTAGCATTTC-CCTGCTGTTGCTGAGACTCACAAAAA--GGAGCAAGTTTTGAAGAGGAGAGAAAAATGTCACATTTTAGCTCAAACTGAAAACAGTAAAAAGCAAACCATTCAGGCTAAGGGGCATAAGGAATGAA---------------GATACAAGCTAACACTGCAGATGCTGTAAGACCCAGTCAGGATGGTTGTTACGCAGTAACACATTCCCCAGGATGTACTGG---------------GAAAGTTAGAGATTTCTGTTACTT--GCTTTGT-----TTTACTTGGTATCTCCTATACATTT-----GATACTCCCTGA-----CACTAAGTGGCAATCGCTTAGCTGGGAACCTTCACAGACTTTAAGACCACACCCACACACAGGTCTCTA--ATATGTTCTGAGCAAGAATATTCTCC-AGTGTCCCTTAAATGTCACTGACCCACAATTGATCTCTTTTGAATGTTCATATTTTAAAATTTAAAACAAACAATAATATTCTTCCTGAAGGATGGGCCTATTCAGACATGAAAGTCAAGAGAGGGAGTAGAAACCAAAGGGAAAACGGTGCATTGGGTAGCATTACATT-AACTGCAAGAAGCCCTATCTGCACAAGAGAGTAGAGCTCTCATCAGTGGTTAAGCAGACTGGAAAGCTGACAGGTGATAAGCATCAACAAATCAC-TAACAAAACCTTAGCTGCTGATTGCAGCATTGATGCAGAACAGAAAGGG-GAGGGGACA-------------------GGACAACCACACTAATGAAAAGGGACAGTGCCCTACAGTTCACTGGCTTTTGTGG-----AGAGAATGACACATACAGACCCACGC-AAACCAAGCCCTTCAGTT---CACCGATGGAGCTGAGAACAGGCAGCACAAAGACAAAACATCAGCAGCAGTTCTGTGTTGAGCAGTGACTAAACAAACTGGGCCACGTGC--CCCCT-GGGTTACAAGGAGCGGTTGGGTGGTATCTGCATACAGACA---GAAAAACAAATGACATTGGTA----CTTCAC-CATTTAA------------------AGCTAGT-CTGCCATATACAGAGAGAGTTTCCTGGGTA----------------AACCTATTGTTTTAATAAAAC---TAGAGTGTCCTGGAAGTAAAAGGCTTTAGGATTCT-------------CTTAAATACAAACCCTTGTAAAATTAATTAACTCCACCATGCTCCTGGAACCC-ACAGAAGGCCCTCTTAGGAC-TTCCCAGGACCAC-TCTGAGTTGTGGCCACCTATGAGCCACACCAGGTTCATTATGAACAAAGC--AGCAGGA s rn2.chr7 60575091 4331 + 139049774 --CAGAC----------TGAAGGGAAGAGAAGACACCAGCCTGG------GGTTTGCACATGACAGTATCTTCATGAAGCCAACTAGTACATGTGCGGGTCAAGTTCAAAAATTAGATATAGT-TCGACTTCAGCCTCGTTTC---CCTAATGGTGGATCATCAGTTGTAAAATAAAGATTGAGTACAGGATGACCAAAAGCTCAAACAG---GCTCAAGACTTGGGC---ACAAAGTGCACGAGAGAATGAATGCACCTTCTAAAGAGA---------------CACCT-CCACAGCCAGTC----GCTTCTCCTGGTTCATTCCTGCCT----------------------TTTATTTT-ATGCAGAGACTGGATTTTTTTTTCCTTTCAAGTTGTTGCTTATTAGTCATACAGTCCTATTTTCATTGTTAAATCGATCTC--------TTTTTATCTATGAAAACTGTTTTGGGTACCTTAAGAAGGAATGGAATCCCATTATAATTTCTC-TTATTAGAATTAATGGAA--TTTTATTTTT-AA-----CACTTAGCAACAGG-TCTTCAAAAATGAATCAAAACCGGTACACGAGTGATAGATGTAAT-TTGAATTTTGTGATAGGCTCTAAGAAGTCAGGGAAGGTCTAAA--ACGGGGACT--AGCTGTTTGTGGTAC--TGTCCCCTCTTCTgactatctggggttgaaacttggttccagcacatactgg--acgttttctagaactcatgtctt------------------------aggtttttgctgttcaggggtagatagtaacaattctgatatcacactcttctggaaatggaaaggttttctgcaa-attaaaggcttaggagaatgccgagtacatcataaatactcaattaaatgttacctactaATGCTTTTTATTCTCTTTACATATGTGGTTTCCACAGTTCACTCGGATAATAACATGGAG-ATAGACTTGAGGGGCTCA--GCCCTGAAGAAGGAAATCTGCAGGAGGTCACACTAAGGCAAG---AACACTAGGCGGAGAGAAAGAAGCCAGCGTAGAGTGGGAAATAACAGGTTCTATTTTGGACACGTTGAGATAAAC-TGCTTGATTCGT----TTGTTTAGTTCCCCCCCCCATCTCAGCAGTTTGTTCTGGTCAATTTTATTACCGCCCTCTAAGACCAAAAAAC-ACTTAAAATTAAATTAAGATAATACTAGGGAATAGAGGCTCAAAAAATACATAACCTCGGGAATTTTCATTGTTTATTGGATGCTAATCTCTTGGGAGGACACAGTCCTAGGAGCT---TGCCTGTTAGCCTTAACTGACA-AAAACCAATGCCCTGGTTCTGCACTCAGATAATTCCTCTCCCTGGAAACTC-AGGGGGGTTGTTGAATGAACATAAATTAAGCTTTTGTTTACCTTGCCCTTTTTGAGGCTAATTAATCAACAAACCTCAGTGGTAAATATTTCTCACAGAAAGGGTTAAAAACAAAGAAATGTAGATAAAGACCAAGTTGGTCGTCACTGTGGCTGTGACAGCTTTCTCCTATCCTTGGCTTCTCCTCCTGCCACAGGGGAGCC----TCACCCCTCT--CCTCCCACCATCT-----CT--------CCCCCACCCTGCCCTCCCTCATTCT-AGCTCCTTCTC-AAACTCCCACTGAGTAACAGGGAGTGCTCGTCATTCACATTTACACCCCATGTTCCCAGAACAGCATGTTACATATGAAGTATGTAGTGTGAGCTTGATAAAG---GTTTTGTCGGTTGCACAGATCCACCTCCTAATCATAGGCTCGTTAGTAAAGTCTTAACCGAAAGAGCGAATTTTCAGACAATGTCAGGGCCACACAATAGG---TTTCTGTGAT----GTCTCTGCAGTTGTAAATACCAT-CATC-------------CGAGTACTCCAGGTTACTGCAGATA---GAAATTAATTTCAGTCTCGCGCTTAAAACTTTTATTATTTTCCAAGCGACTTCCATGAACAGCATCACACAAGATTCTACCTTATTTACTGCTCTAACCTGAATGAGAACAAG--AGTCCTTGATAAATATTTAACTCACTGAGTAATAAACAGATCCCTTCAGTTTTCTACTCAAAAGCAAGTATTTTTCTCTCCCATTTTCTTAGATATTTCTCTGAAATAAACTATTCAAAGA--AGAGATGATTTTTT-TCCTTCATCTTTGGTTCTCCCAGTAACCT-AAAATAAAATCAGCCGGACGTTGGGATATCAGTTGTGGCAACAGCAGTTCTTCTCCAAGCCCATACCA-CTGGCATGCTTAGAGCAGGTTAGAATGCCATCAACAAAGATCAGGCTGTATTTTACTTACATTGGGATGGGGACAGCAAACAACCCTCTCCAGAGAAAGAAATACAGGGTCATTGTAGCTCAAACAGCTGTTAAGACATCAAAAAGAG-TGAGCCTCCTTAAATAAGGGCACCACCAAATAACTGTTCTATCCATCCAGCAACTAGGCATCTTCTTACGCCA-CAGGTCTAGATTCTACCAATACTGTGCCAACTGGTATTAATAAAGAGG-TAAAGCCCTATTCTATGCAGAATTATCACATAA-----TAAGGACAC-CTCTGTCATCCTCTTTTGTAATTGAATTTTGCCGAATTCTGATTTGATATTTTTTAATGTGTCAAACTGCCAAGcagagtttctctaactgggtactgttaaca--tcagatcagatgattctttgttacgacaa----ctgtatgttgtggggtgcttagcagcacccctagaccacaagtactaaatgataacagtgcctctccttctcttctcc-caacattcagaaacagtcttgaaggacattgacaaatgtcccctgga-gtttaagtttgctccac-ttgaaagccaTAGCTGGAGAGGACACAAAGTGTAGCAATTTTTGAATACCCAAAATGCTCTAATGTTGTATTTCCCAACCATTAGGGATAAATGAGGAGTCTGTAAGTTATGATTTAGTAACACTCCATTAAACAGCATATTAAATTAACTTATAAATCCCAAGCCCCAGTTATAACAGATGATAAATATAAATCCAAAA---CTAGTGTACCCACGAACCTCACTTTCTTACAGTTT-GCAGCTATTTTTAACAGTAAATTAGAAGACAAA-------------AGTAAATTGTCTGCATCTTCCCATGTGGCTGGGGAGCCTAGGGGA--------------------CCTAGAACATATTGTGTCTTGTAACATTTTTTTCCTTTTCTCTGAGTAAACAAGGTAATTTGGGTCTTTTTAACTGGTGTGGAGATGCCTTTAGCATTTC-CCTGCTGTTGCTGAAACTCACAAAAAAAGAAGCAAGTTTTGAAGAGGAGAGAAAA-TGTCACATTTTAGCTCCAAATGAAAGCATGGAAAAGGAAATCATACAATCTAAGGG-CATAAGGAATGAA---------------GAGATAAGCTAACACTGCCGATGCTCTAAGACCCGGTCAGGATGGTTGTTACTCAGTAACACATTCCCCAGGATGTACCCG---------------GAAAGTTAGGGATTCCTGTTGCTT--GCTTTGT-----TTCCCTAGGTATCTCCTGGACTTTT-----GATACTCCCTGA-----CACTAAGTGGCAATCCCTTAGCTGAGGATGTTCCTAGACTTTAAGACCGCACTGACACACAGGTCTCTC--ATATTTTCTGAACAAGAATATTCTCT-AGTGTCACTTAAATGTCACTGGCTCACGTTTGATCTCTTTTGAATGTTCATATTTTAAAA--TAAAAAAACCAATAATATTCTTCATGAAGGATGGGCCTATTCAGAGATGAAAGTCAAGAGAGGGAGCAGAGACCAAAGGGGAAATTGTGCATTAGGTGACATCATATT-AACTGCAAGAAGCCCT---------AGAGAGTGAAACTGGCCTCAGTGGTTAAGCAGACCAGAAAGATGATAGGTG---AACATCAAGAAATCAC-TAACGAAGCTTTAGCTACTGATTGCCGTGTTGGTGCAGAACAGAAAGGG-GAACAGACA-------------------GGACATCTACACTAAAGGAAAGGGACAGCGCCTTACAGTTCGCTGACTTTTGTTG-----GGAGAATGACACATACCAACCAGTGC-AAACCAAGCCCTTCAGTTCACCACCGATGGAGCTGGGAAGAGGCAACACAAAGGCAAAATGTCAGCGGCAGTTCTATGCTAAGTAATGACTAAAC--ACTGGACCCCATTC--CCCCTGGGGTTACAAGGAGTTGTTGGATGGCATCTGCACACAGACA---GAAAAGCAAATGACATTTGTA----CTTTAC-CACTGAG------------------AGTTAAC-CTGCCATAGATAGAGGGAGTCTGCTGGAGA----------------AATCTATTGTTTTAATAAAAT---TATGGGGCCCTGGAAGTAGAAGGCTTTAGGAAGCTTACCTGC----TCTTTACATAAAAACCCTTGAAGAATTAATTAATTCCA--------CTGGAACAC-CCAGATGGACCTCTTAGGAC-TTCCCAGGACCAC-TCTGAATTGTGACCACATATGAGCCACACCAGGTTTATTATGACCAAAACATATCCTAC a score=101785.000000 s hg15.chr12_random 392504 1107 + 590431 atattgtccagaagcacattccaagggaatgcagaatgtggaataattatttgtggtacaggcccatcctgtac-attgcaagacctccatagcatccttgaccctcatccactatatgtca---attttgaca--cacatgc--acccccagcattgtcacaacccaatatttcccacaaaattccaTGTGCATCTTCCATAATTTTCCATGCACACACATTCCCAAATGTTGGTATAACTCCCTGTTGACACACTCCCAAAGACTGGTATAA--CTTTCCACATTGGATATTCTAAATAACTGGGAATATCCTTGTCACCATGGTTGTTTCAGTAATAAATATGGAACCCAGGACTAAGCATGTCAGTGTGAGTATTTTCCTGGCTCCATGAAGGTCAACTCAGTGAGCACAAAGCTCAGGACTTATAATGAAAATTCTGGAACCCTCTT-TCCT-------TTTGGATAATGTAGATAC-AAAGTCCAAAACTGGGCAAAACTAA----ATCAAAGAAGAG--GAAAGAACTAAAAGAAGGGTAGAAAAAAAATAGAGAGGGAGATTTCCTCAATCATCCCAGAAACCTTATCTCCATTATGTGAGC-AAACAGTTCCGTTAAATA-CGTAAGCCATATTGAGCTTTGTTTTTCCATTGCTTACAAATGAAAGTTCTCTTATCTTCCCCTTGCCCTCCAAGGA---TACATGACTCAGGGAAAAGAGCAAGCAAGATAGagccccatgaaggcaaggaacttgaatacctggtttaattgtttgtccttggactgtagcatggtatgtgggtgccagtaaatattagttagttgaatgaatG-AACAAACAAACATAGGCTTGGACAAATAATCATTgagcatataggcttgggctagcttcatggctttgccatttactacc--tgagataaccctaggcaaatagcttatccattttcttacctataaaactggagGCAGAGTTCTAc--ctg-ctcacctctctaacttcatctcacgatactctactcctagattattacactccagcaacactaacctctttgcaagaacctcaaacacctcactctcttttctgaggcatggcctctgcaaagaatatttcatctgcttaggac s mm3.chr10 7769451 994 - 130738012 atatacttcagaagcacatgtaa----aacacaga---tggggtaatcccatctggtacagacatttcctgagcaatctcaagacatt--tagcattcttgatctccacccact----gtcagtagttt-aacatccacatcctcaatcTCAACATTGAAACAATGTAACATTCTTCA------TCAATG--CCCCTCTGGTACATTGCCATGCATCCACATTCCTAAA-GTTACTGTAGTT-CCTGAGGA--------TAGTAACTGGAAATATCCTTGTCACAATG---------------------TATCCTTGTCACAATGGTTACTTCAAGAAGAAGTATGGAGCCCAGAGCTGAGCCAGTTAGCAGAAGCATT---CTAGCCCCATCATGGTCAATCTGATCAGCACAAAGCATAACATTTTAAATGGAAAGTCTGGGATCTTCTCTTCATATCTAC-AGTAGGGCATGGAGATAGAAAAATCTGAAACTGGTGGAAACAAAGCACAACAAAAAAAGGAAAAAAAAACTAAGGGACCGG-----GAAAAATAAATATGGATTATTATTCAG-------------------TCTGGCAGGTAAGCAAAGCAATCCT-----ATACCATACGTCATTCTGAGTTTTGTTTCTCTGTTGCCTGTAGATAGAATTTCCCTTGG-TTGCCCTTGACCTCTAAGGCAGTAACATGACTCAGGGAAAAG----AACAAGACAGAG-TCCAGGAAAGCGAACACCTTAAA---------------TACATCCCTACAGCACATCATGGTGCCTGAATTCAGAGAAAGATTAGCT--TTAAATAAATG-AGAAAACAAAT-----CTTGAACAAAC-ACCATAGAACAAAGAGACTTGAATGGGCTcagtggctttgccatttgctacc--tgagaaagctt---------------ttcatttccttacctataaagctcggtacagagttctactgctgtctcacctctcctacttcatctcagagttctctcttcttagattattatgctctgaatacacatgcctcttggt-aggtcctcaaacattccagtctcgcct---------------ggccaagactatgtcctctaccagggat s rn2.chr7 60582363 984 + 139049774 atattctccagaagcacattcaa----aatacaga---tggggcaatcctgtctgatacagacctgtcctgtgcaatctcaagacatt--aatgatcctttgcctccatccactaaaggtcagaggttttaacatccACATACTTACTCTTGACATTAAGACAATGTAACATTCTTCA------TCAATGT-CCCCTCCCTTACATTTCCATGCATCCACATTCCTAAA-GTTACTATTGCT-CCTGTGGA--------TAGTAACTGGAAATATCCTTGTCACAACA-------------------------------------GTTACTTCAAGAAGAAACAGGGAGCCGAGAGCTGAGTCAGTAAGCAGAAGTATT---CTAGCTCCATCGAGGTCAATCTGATCAGCACAAAGCACAAATTTTAAAATGGAAACTCTGGAATAGTCTC-TCATACATGTGAGTATGGCATGTAGATAG-AAAATCTGAAACTACAGGAAACAGACCACAAAAAAGAAAAG--AAAAGAACTAAGTGATTGG-----GAAAAATAAAGGCGGATTGTTACCCAG-------------------TCTGGCACATAAGC-AGGCAATTGT-----ATA-CATATGTCATCCTGAGTTTTGTTTCTCTGTGGCTTATAGATAGAATTTCTC-----TTGCCCTTAACCTCCAAGGCAGCAACATGACTCAGGGGAAAG----AACGAGGCAGAGCCCCAGGAATGCAAATACCTTAAGCATATCATTTCATATTACTTCTCTAGAGTACATCATGGTTCCT---------GAAAGACTAGCT--TTAAATAAATGAAAAAAACAAAT-----CTTGAACAAAC-ACCACAGTACATAGAGCCTTAAACTAGCTCAGTAGTTTTGCTATTTGCCAGCATGGAGAAAGCCT---------------CTCATTTCCTTACCTGTAAAGCTGGGTACAGAGTTCTACTACTGTCTCACC-CTCCACCTGCACCTCACAGGTCTCTGCTCACAGGTCACTATGTTCCGAGCACACCTGCCTCTCGGT-AGGTCCTCAAACATTGCAATCTCTTCG---------------TGCCAAGACTATTTCCTCTACTGGGGAT a score=7605.000000 s hg15.chr12_random 393613 127 + 590431 tctttctcttccccttcttatgcttggatttttctggtccttcaagattcaatttaaagtgctgcttcctccaccaagtcatccctgacAA-ACCTACAGCCTTTCCCAGATTGCTATCACAAT----ACTG s mm3.chr10 7770447 96 - 130738012 tct--------ctcATCTTATGCTTGACTCTT--------------------TTTTTAAAGATACT---TCTACTAAGGTGTCTCTGAAAA-TCCCATAGCACTGCCCAGATTGCATCCACAGT----AATG s rn2.chr7 60583553 96 + 139049774 tct--------ctcATC--ATGCTTGGCT-----------------------TTCTAAGTGCCACT---TCTACTAGGGCATCTCTGAAAAATCCCATAGTACTGCCCAGATTGCCTCCACAGCACTGAGTG a score=124381.000000 s hg15.chr12_random 394108 1242 + 590431 aagacaACTGATAGATATCAatagcacttgtcacaatctacactttgtggctatgatttgtt-tccttgttcatctagtgtctctttcactagaaaggaaaatccatgaaggcagggagcacgtccatctagttaatcc-atcaccaacacctagcataTAATTGTCAATACCTAAT-ATCGAATGAAtggttc-ctactacttctccagttaacttcatac---tcctcaat-ctctatattctctagctatataggccttattttaattcctcaagctgctattgcacattccattccccctgcctgaagcc---ttctttcatcccagcactgtaacattacctactttcttcctgatctcatctccttta-cctgtctaatttctactcttctatcagatcttagtttaacattgttctt-tttccagaaggctttctctgaccccaaatactaagttaaaaccccctactATTCACTGCAATAATTCCATGTCATAATACTAATCACAAGTACTATAATAATTACTAAATTACCTCTTTTCCATGGT-------AAGCTCTATGGAGTCAAGGACTGTGTCTTAGTCACAGCTGAAACACATAGTAGGTGCTCAATAAAAC-CTATTCCCTTCCCTCTTTTGATAAGACTGGTACCTAAATCTGAGGTTGTCAACAACATCCTATTG-CAAGAGAGAGACTTTTGGACTATTCCCAAAGTCCAAAGTCTATTCAAGCAAAGCCACATTCTTAACAAAATCTGACTCCTCTAACTTGATATCAAGCAAAATGTCAGTTCTGAAGGACTAGATAGTTCAATAAATTGCACAGAACTCCAGTGACAGGCATCGCAAGATTGCCATCAGATTTATGATTTGAAAACTCAACTACT-----CAAGTAAAAATCTCTTCATCACAAGGTTATAGGGCCAGCAGAGTGTTACTATTACAAGGTTGAAAAGATTCAGAAAAT-----TCACTATAGAAATAAAGGGTTATTTGAAAATAAAATTAAAC----AGAAA---AAAACAGGTAATAAAAA---------------------------------------------------------------------------------------------------------------ATAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACATATGGTAAAAC-----AACAAAATTAAACAAGG--AAATAGGTTTTCTTTTTAGAAAGCAAACTCAGAGACTGATTTACCATCTCTGAATTATTTCACTTATGAATATCATCAGCTCAATTAAGTTAGTAACAAAGCCTGCATTGCGCAATAAAGTAAAAAAAAATCATATTATGCAAAATGTTATTAGGAAAGCTTACCTTTTGGCTGGTCAGTAGACAGT- s mm3.chr10 7771409 1494 - 130738012 AATACAACTGATAAGGGATAATAACATGAA-CTCAATTTGCATCTTTTGCCtatgatttttttaatgtatctatctactgtgtctttcactagaaagttaagtctgtgacgggaggaagcatatctctctagctaagcctatcactgttgcctagcatgtagttgtccatacataatgatcaaatagatgaTAAGTTGTTTCCCCTCCAACTCACTCCATGTATGGCCTCTATGTTCTGTATTGGTCGGCAATACAGA--TTGTGTCTGACGCTTCACCTGTCTTTGTTCATGCCCTTGCCACCATCGTAAGCCATTTTCTTCCATCTGGGCAGCAGAACACT-CAAATGTACTTCCTAAGCCAGTCTTGATTATTCGGTCTTATTTCCACTCATCTGTCAGGTGCTAGCTCAATATCGTTCTTCTTTCTAAAGGGTCTTCTCTGGCCCCAGACATTAACCTGACCCTTGGTGCTGTCCACAAAAA-AATACCACATCATAATATTAAGCATTTGTATCATAATAACTATCTCATTGTCCCTGTCCCCTGATAAAGTGAAAGCTGGGTAGAGTCAAAG-------TTTAT---------------------GGCTCTCAATAAACA-CTGTTGCCTTCATTCTTCCAAGAAGATGAGTATCT-AATCTGAGGCTGTCGGCAAGGGCATGCTGCCAAGGAGCACCACCCTAGACTGTTTCCAAG---------TAACCCAAGGAAATCCACAGCCTAGGGAAAGTCTGACCCCTCTAACACAACAATAAGACACAC----ATTCCAAAGGACTGTATACTTCAATAAATTGCCTAGCAGTCCAGTGACAGGCATCAAAGTGTTGCCATTAGATTTATGACTCTGAAACTCAACTACTGTTCAAAAGTAAACATCTCTTCATTCCAGTGATATCAAGCCAGCAGAGTATTTCTCCTGCAAGGTATGAAATATCCG-GAAATGCACATCACAATGAAGACACGGAGTTGTTAGAAAATAAAAAGAAGC-ATTAGAAAGATAAAGCATAGAATAAAAATGAGCATATCCACACAAGTGcacacacatacacactctcatacacatacacacatatatgtacacacactgt--cacacatacatatatacacacatatacacacactcatacatatatacatatacacgcattcatacacacacatatatacattcacaaacacacacacaTATTTATATACACACTCACTGACATATATTcatacacgcatacatacacatactcatacacatacatacattcacagacacacatatatatacacacactgacacacataaattcacacatgcacacacacacaAACTTAATGAAACAATA--ATGCAAGCTTTCCTTT-----GTCCAACCC--AGACAGATATGCCTCGTCTGAACTATTCTATCTACAAATATCATGAGCTCAACTAAGTCAGCAATAGACCTTGCCTTATGCAGTGAAG------AAAGTCATA-----CGAGGTAGTGCTAGTAAAACTTACC-TCTGATTGCTCAGTAGCCAGGT s rn2.chr7 60584222 1306 + 139049774 AAGCCAACTGATACAGGGTTTtagcattaatctcaatttgcaccttttacctatgatttttt-aatgtatctacctactgtgtctttgactagaaagttaagtctctgaagggaggaagcatatctctctagctaaacctgtcacggttgcctagcatgtagttactgatacataatgatcaaataaatgattcattgCTTCCACTCCAACTCACTTCATGTGTGACCTCTATGTTCTGTATTAGCCGGCA----------TATTTCTGATCCTTCGCCTGTCC--GTTCATGCCGTTGTCCCCATCATAAGGCATTTTCTTCCAT-TAGGTATGGTAACACT-c----gtacttcctaagcctgtcttgattatcctgtcttattgctactggtctgtcagatgccagcttaatactattctt-tctctaaagggccttccctggccccacacataaacctgaccctcactgctgtccaca--------------tcataatattaaccactggtattataataaccatctcactgcctctgtcccctgataaagcgaaagctgggtaggggcaaggac--tgtTTTAT---------------------GGTTCTCAATAAAAAACTATTGCCTTCATTCTTCCAAGAAGATGAG-------ATCTGAGGCTGTCACCAAGGGCATACTGCCAAG-----------------------------------TAACGCAAGGAAATCCACAGTCTAGGGAAAGCCTGACCCCTCTAAGATAACAATAAGACACAC----ATTCCAAAGGACTGTATACTTCCATAAATTG------AATCCAGTGACAGGCATCAAAATGTTGCCATTAGATTTATAACTTTGAAGCTCATCTACAGTACAAAAGCAAACATCTCTTCATTCCAATGTTATCAAGCCAGCAGAGCGTTTCTCCTACAAGGTATGAAATATCTGAAAAATGCATGTCACAATGAAGGCAGGGAGCTATTAGAAAATAGAAATAAGCAATTAGAAAGATAAAGCATAGAATAGAAATCAGcatacacacaca----------------------cacacatgtacacatctatgtatacacatactctcacacacatactcacatatagacgcatatacacacttatacaaat------------------atacactcatatacatacatttacacacacatacac------atatacac-----------------cacacacacacgcacgcacatgcacacacaca------------------------------------------------------------------------AACTTAATGAAACAATAGTACACAAGCTTTCCTTT-----GGCCAACCC--AGGCAGATATACCTCATCTGAATTATTCTACCTACAAATATCATGAGCTCAACTAAGTCAGCAATAGACATTGCCTCATGCAGTAAAGT----AAAAGTCATA-----CAACATAGTGCTAGTAAAGCTTACC-TCTGACTGCTCAGtagatagat a score=4411.000000 s hg15.chr12_random 395350 142 + 590431 TAAAAAGTGAGGATTTTCTTATTCTGTGATGTGAACTGATAAACAACATAAATCTCAGG---AGAAATCATACATGTATAGAAGAAATGCATGGCTTCTTCACCCTGATTGACTTTTCCCTGCTCCCCATGTGTCTCAGGAGAAG s mm3.chr10 7772903 137 - 130738012 CAAAAAATGAAA-----CTTATTGAACAATGTGCACTGACAAGCAAGGTCAACCTCGGGGTCAGAGGTCATATATGTACAGAACAAATAAATGATGTCTTTACCCCAACTGAAATGTTC-TGTTTTCCAGGT--CTCAGGAGGTG a score=253530.000000 s hg15.chr12_random 395492 2164 + 590431 AATGCTCTTTTTTATGCCAGACGCATCATGATGAATGCTGATGAGACAATATTTGACTCATCACTGCTTAGATGGTTATTTTGCATGCAATCTTTCAACTTCTTCATCAATTCATTGGCTTGCACACACAGCAGTATTTGGGGTGCGATTCCTAGTTAGCAGGTGAACA--------------------------TTTTT-GTTTTTAAATTAC---------AGGGATTTTATTAGAAGAAAAGGTATATTTACTTTCATCAGTTTAGATTAAGTTGATCCAAGAATCAATTAAAAG-ATGCAATAATCTTCAAAGTTATTTTCTTTAATACAGTGACCCACAATTGTTGTGAATCGTTTCATGTCTATGGAGATACAGATGAGCTAAATAGATATAAAT-CTAGAATCATACAACATGTGGCAGTTTTTGTCTTCTTTGTGATTCTTCTGTCAACCCTAATAATTT-CAGAGGAAAATAGATCTGCTTTTTCCCTCTATGAAACTATCTCATTCCAATATTCAAAAAATACAAATAACAGAGGACAAAACTTTTCAGAATATAATTT-CCCCTA-AGGTTTTG-------------------GGA--AATCACTGCACAGAAA---AAATGAGCTATCCTTGTAATTCACAATGGCAGTTAAGCATAAGGTATAAAGACATCCAAAGCT-TTTTCTGTAAACACTATATACGCAGAGAAGTTTATAATTAGCAGTGGTTGAGGGAACCAAAGACAGAAGATATTGACA-ACTGAGAA---------GCCAGGATAACATCTTCTAACCACAAAGTGTTGT-GTGGTGAAATATTTGTTAAGAGAATTAGCAAGAGTAGGCAACAATTTCTCTCGCATGCAGAGAGTGGTATTTAGAGTATAGCCA---TTGGCTAAGTAAAGCTTTAT-AGAACAGTAATTGGTAATGTTTGGGGGGACATGCACCCCTTTGAAAAATGTCATAATCTACCATTTCTTATTCCCAGAAAATATATGCATATGCACAGAATTTTTCATAAAATTTGAAGAGATTCCCTGAGGCTCTCAAGTCTGTCCTTAGAACTTTCCTCCATCCTCCACCCCCATCCCCAGCAGAAGTCTCTACTTTGGAGAGAACCCTCACCTTAAACATGGGACTGAAGCTTA-----CAGGGAGAAAAAAG-------TACTATGCTGTTAGGAATTTGTCTTCAATACAATCACACCTATTT-AGCAGAAAAGCTCCTGTTTCTTACCCCTGCTACCTCAAGGACAGATATGTAGAGAAATGTCCTGCACCGATTCTTCCTGAAGAGTCAAGGGAACATATTTACAGTTCATGGGCAAATA---------------AACTTACACTGTAAATGATCATATATAAGCTAATGAGGAATTGAAGGAAAGtaatatttatgaagtatttaggtatgctaagccctctatgagctgctttaatacaaattaccacattaaatcttcacaagaaccctgggagctagttattattattcctactcaagaataaatggaaacaatggttcc-aagaagttaactaacctgcacaaggtcacactgctggttgaggatggaat-----ttaggttctaactcggaattatctcattccaaagctcatcttctttccTTTACCTTCTATTTCTTCATGGCTAAGTTTATGGCATGGTCATCCACTGTGCTTGGAAAACACGTTAGAGCTTAGG--GCCTTTCTCA---TGGAGTACATAACTAATCCACTCAAAagaatcccaacccctccccaccacctccactccaaccaccctgatacaaagca-tcatcatctcccc-----ctggattattgtaatggcctcctcactagtcctgcagcttcctccctgaccctcatacagcccatactcaacacagcagccaaagtgatgctttaagaacaaaagttagatcacagcatcgctcctgtattcaaaccctgcaatggctctccaacatgctcagaataaaaactgcatgccttatgaaagcctacaaagtccaatttcatcaggtctcagacctgcctctctgacctcac--------cttagatcttcaaaatcctcctgtcta--------gcctcattagcctgcttgatgcactcttcaa-ttttgtactgcttatcccctctgtctggaatgctcttcccccatatctctatcacaaactc---ctcaaatcttatgtctttgcctcaaatgccgcctc---ctttatgagggcttccccagttatgctatttaaaattgcaca s mm3.chr10 7773040 2139 - 130738012 GGGGC-CTTTTTCGTGCTAGATGCAGGACAGTGACTACTGATGAGACAATACCTGACTCATCACAGC-CTGAGGGTAGCTTTACCTGTGATCTTTCACACCCACC--TGGTTCTTCATCTGGTGCACATAGCAGTACTAGGTGTATGGTTCCTATTTAATAAATGAGCAAGTCTTTGTTTTAAattttattttatttttttatttttaaattttattttgtttttaaattttattGGGAGAAAGTATATGTTCACG---ATTCATTTGGATAAAGTTGATCCAGAAATCAATCAAAAATATCTAAGGAACCTAGCAATTATGTTATTTAATACAGTAGTCTACAGCTGTTATGGATCATTAGGTGTCAGTATGTCTATGGATGGCTTATATAGGGAAAAAT-CCAGAGTCATACAGAATAGGG--GATTTCCTCTCCTTTGTGATTCTTCTGTCAAGTCTGATAGTTTCCAGAGAAAGATCAA-----ATTTTCCTTAGGCGAAACTATCTTAATATTATATTCAGGGAGGACAAATACCAAAGGAT-GATCCTTTCCGACTATATTTT-TCCCCACAGGTTTTTTT-----------------GGATTGACTACTGAGCAGAAAAATAAAAGATTTATCCTTGTAATTCAAACTGGCAA-CAGACACAACGTATGCCGAGATCTGAAACTCTTTTCTGTAAACAGTATATACACAAAGACGTCTATAATTAGCCGTGGTTG-GGCAGTCGAAGACAGAAGATATTGACAGACTGAGAAATAGGAGAAGCCAGGATAACATCTTCTAACCACAAAGTGTTTT-GCGGTGAAATATTTGTTAGGAGAATTAGTAAGAGCAGGCGTTGGGTTCGTTCACACAAAGCAGG--------AGCCTATTGCAAGCCCTGGCTTCGTAAAGCTTTGTAAGTACAAAAGTTGGTAACGTCT-TGGTACCATGCATCCCTTT-AAGAAGGTCATTGTCCTTGGTTTCTTAGTCCCACA----ATATGCACATTCACA-AATGGTTCTTGAAATTTGAGCAGACTCTCTGAGCCTCTGGA----GCCCTCA---------------CTCCATGCCCCTCTCCGGTGGAAGCCTCTGCCTTA-------------TCTCCATCATGAGACTGAAGGAGACTTGGTGGGGGGGGGGGGGAATGGGAGGAAGCACTG---GCAATTTGTCTTCAATACACTTGCAGGTATCTGAGCAGAAAAACTCCTGTTTC-TACTCCTGCTACCAGAAGGACAGACATACTGCAAAATATCCTGCAAAGACCCTGCCCAAAATGTCAGAGGAACATATTTCTAGTTCATGGGCAAATAAGCCATGATCTGTTGAACTTACATTGTAAAATACCATAGTTAAGCTAATGAGGAGTTGAAGGAaattaatatttatgaagcactta-gtatgctaaaccctctatgcggagctttcaaac--attacca-attaaatcttgacaa-aatcctgagagctagctcttattattccatctcaaaaacaaacacaataagcagctct-aggaggagaaatgacttgcccaaggtcacaccgacgataggtgacaaaaa-----ttggattctaatttagggttttctaattccaaattacaact-------------ccctatTGGTCC---------------GCATCCTCATCTACTACTCCTGGAAGGTGAATAAGAATCCAAGAAGCCCCTCTTAAGGGAGTATTTATCCCTATTTCATCA--CTGAGTCCCAA-CCCTCCTCGCCACTGAGACACAATCC--------CCAGAGTAGTTGCCCTTTCCCC---ATCTGCActa-cctgggtgcccc---------------agttctacctttgtcagcgtatggtctagtctcaacagagacgtccaagtggtcctcccgaggcatcgatttgatcacag--ctgctcttctgctcaaaccctttaatgtctccccagtgtgctcagaataaa-gccacgtgccctacagtggcccgagaaaccca-ctgtgtcggggcat--ccctacgtctctgacgtctctggggtctcatgaacccctcacatccacca-cccaatggagctgctacacaggcctctttAAGGAGCCCCTTGACTCCCACACTGTGTAGtccctgggcctagaatgttctacct----------gttacaaactgcctctcatcatttacgtctttgcttcaaatgccgcctccttctctctgacatctttcctgaccaggctatttataattacacg s rn2.chr7 60586940 2146 + 139049774 GGGGT-CTTGTTCATGCTAGAT-CAGGAGAATGAACACTGATGAGACAATATCTGGCTCATCCCAGA-CAGAGGATTGCTTTTCACATGACATTTCAGACTCACC--TAGGTCATCGTCTGGTGCACATAGCAGCCCTTGGTATGTGGCTCCTGTTTAACAAATGGGCAAGtctttattttaaattttgttttatttatt-atttttaaatttt-----gtttttaaattttattGGGAGAAA-TACATGTTCATG---ATTAATGTGGACAAAATTGATCCAGAAATCAATCGAAAATATCCAAGGAACCTAATAATTGTTTTGTTCAATACAGCAGTCTACAACTGATGTGAATCATTAGGTGTCAGTGTGTCTACAGATGGTTCGTATGGGGGAAAAGATCAGAATCAGACAGAATGTGA--GTTTTCCTCTCCTTTGTGATTCTTTGGGCAAGTCTGATAATTTCCATAGAAAGATCGA-----ATTTTTCTTAGGTGAAACTATCTTAATATAATATTCAGAGAGTACAAATGCCAAAGGAT-GAACCTTTCCCACTGTATTTTACCCCCACAGGTTTTTTTTTTTCTTTTTTTCTTTTGGATTGACTACTGAGCAGAAAAGTAAAAGATGTATCCTTGTAATTCAAACTGGCAA-CAGATACAATGTATGCTGAGATCTGAAACTCTTTTCTGTAAACAATATACTCAGAGAGATGTCTATAATTAGCAGTGGTTG-GGCAGTCGAAGACAGAAGATATTGACAGACTGAGAAATAGAAGAGGCCAGGATAAGATCT---AACCACAAAGTGTTTTTGTGGTGAAATGTTTGTTAGGAGAATTAGTAAGAGTGGGCGGTGAGTTCTTTCACACGAAGCAGG--------AGCCGATTGCCAGCCCTGGCTAAGTCAAGCTTTATAAGAACGATAGTGGATAATGTCT-TGGTACCCGGTACCCCTTT-AAGAAGATCATTGTGCGTGGTTTCTTATTCCCA-------TATGCACATTCACA-AACTATCCTTGAAATTTGAGAAGACTCTCTGGGGCTCTTGA----GACCTCA---------------TCCCACTCCCCTCTCCAGTGGAAACCTCTGCTTCAAAAAAGATCTTCATCTCAATCCTGAGACTGTAGGGGG---GGTTGGGAGGTGGGGG-------GGGGGTACTG---------------CCATACAATTGCAGA-ATTTGAGCAGAAAAACTCCTGTTTC-TACTCCTGCTACCAGAGGGACAGACGTACTGCAAAATATCCTGCACAGATCCTGCCCAAAATGTCAGAGGAACATATTTCTAGTTCATGGGCAAACAAGCCATGATCTGTTGAACTTACATTGTAAAATACCGTAGTTAAGCTAATGAGGAGCTGAAGGAaattaatattcatgaagcactta-gtatgctaaaccctctatgaggagctttcaaat--attacca-attaaatcttgacaa-aatcctaagaggtggttcttattatcccatcacaaaaacaaacagtgtaagcagctccaaagaggagaaacgacttgcccaaggtcacaccgttgataggtgacaaaaaaaaatttgggttctaatttagagtttgctaattccaaattacatc--------------ccctatcgatcc---------------acatccccatctgCTATTCCTGGAACATGAATAAGAACCCAAGAAGCCCCTTTT----GAGACTTTATTCCAGATTCAGCc--cagagtcccaa-ccctcctcgccaccactacgcaatct--------ccagagcggtttccctttactcagtatctgcactaccctggttgcctctgctcaggtggc-tgggctcagcctttgtcagcatatggtctagtctcaacagggaagtctgagtggccctccggagccatcagtttgatcacagaactgctcttctgctcaaacccttcagtgtctccccagtgttct-agaataaa--------gccccacagcggccagagaaatcaacctgcatcggggcct--ccctgagtctccgaccactctgggatctcatgaacccttcacacccaccatcccaatggagctgctacacaggcctctgtcaggaaccccttggcttccacactgtgtattccctgggcctggaatgttctaccc----------attacgaactg-gtctcatcccttaagtctttgcttcaaatgccgcctc---ctctctgacgtcttccccgaccgagctatttataattacaca a score=105727.000000 s hg15.chr12_random 397835 905 + 590431 CCAACTAATAccccaatgttccttattctcctacccttctttattttttcc-atggtatgtattatcatttgatatacctttaatagcactcatatgcttatgttc-------------------------------------tccttcttgcct---cctgtagaatataagtttcataagcgcaggaattgttgcctgatagtttactgctatagttttagttcctgaaacaattccaggcacacagtatgtgcacaattaatgtttgatgaatgaataagtAAATAAATGGTCACTGGCACTCCAAGTCTTAATTGACAGACCAACAGAACACACTGAACTGTGCAGTCTTCTAGAGTCTACTTGCATGATAACTGCTGTA-----ATAGGAGGGCTG-CCTCTCAACACTCCACTGCACGCCAATTAAATGCAGCCTGTGAGTGTGTGCACAGTCCCCAGCAAAGTTTGGCCTCCCCTGGTACAACCAAAGGGCTCCTGCATGTCATCTTTTCAGTTCAGTGCACCACTTAAGACATCTAAATCAATGGAAACAGAAACGTTCATTTTAATTTAAAATAGC-----CTTTGCAGAAGAGGTGTGAGCTTTACATTTT--AAGCAAGTTTGCCAACTTTATCCTTAGTTAAATAATAAGTGCCACAAGAATTAATAGATTTCATGCCACCCAGAGATCAGAAATAAGGTGAAAAAAACAGTTTCCTTCCTTTTCCATGGAGTAATTAGATATATAAGTGAGGACATC-TATGGTTTTAAGAAATTGTTAGATATGGTTAAATGCTTGGGGGCGGGGGAGAGGATGAGAAGAAGAATCCTCCCAAAGCTGTTTACCTTT---ACCAACCTAGGAAAAGATCTTGTCAATC-TCTGCTAAAAGGTGTGTTAGGGGAAAATAAAATAAAGACAAATA----AGCAAATGTGTTTTAATACTCCTGAAA s mm3.chr10 7775179 848 - 130738012 ctgacctttatgctgacagccccagttcttccacccttct---ttgtttcctgtaccacaccttagcccttgatgtac-----------cttatttgcttaggttctgggggttttgttttgttttgttttgttttgttttgttttgtttttcttctccctgtagaatgt--gtctcacaagcgcagggatttttgactgacag-ttgctcctatgatgccacttctgagaccagtgtcagccacagcataggtacacagccaagctttggagaatgaa----agaatAAACAGCCTTTGGTACTTTAAGTGT------------------------------------ATCTTCTAAAGCCTAGTCGCATGGTGACTGCTATGGGGGCGGGGGGGGGGGG--------------------------------------CACTGAATGAGCATGCAGTTCTCAGCAAGGTTTGGCCTCCCATGGTACAACCAAATGGCTGCTTCACAATTGATTCTCAGGCCAGTGTGCCAGTCAGGACATGTGGCGCAAAGGAAACAGAAAAGTACATTTTAATTTAAAATAACATTTTTTTTCCAGAAGAGGTGTAAGATTTACCTTTTACAAAGAGGCTTGCCAGCACTATCCTTAATTCAATAATGAGTGCCAT-GGAATTAATGGACTTCGTGACACCTAAGG------AATCAAGTG-AGAAAACAATGTCCTTCCATTCTTGGGGGATAATTAAAGATATAAATGAATAAATCATACACTTGTATGAAATGGTTAGATATGATTCAAT-------------GAAGGGCAAGAAAAGAGAGACCTTCCCAAAGCTATTCACCATTAAGACGAACCCAGAAAGTAATGCTGTCAATCAATTGTTAAAAGGTATGCCAAGGGA----AAAATAAAGACAAATAAAGGAAAAAATACAATTCAATGCCTCTGAAA s rn2.chr7 60589086 845 + 139049774 ctgacctttatgctgacagtcccagttctttcatccttcttcattgtttcctgtcacacaccttagctcttgatgtacctttcgtgcaacttatttgcttagattc-------------------------------------tttttttttcttctccctgtggaatgt--gtctcataagcgcagggatttttgacagacagtttgctgctctgactccacttcctagaccagtgtcagccacagcataggtacacaGCCACGCTTCCGAGAATGAA----AGAATAAACAGCCGCTGGTACTGTAAGTCT------------------------------------ATCTTCTAAAGCCTAGTCATACGGCGACTGCTATGGGGATGGAGGGGGTTGGGCATTACAGCAAGCTGCTCAGTGCCAGTTAGAGCCTGCCACTGAGTGAGCATGCAGTTCTCAGCAAAGTTTGGCCTCCCATGGTACAACCAAATGGCTGCTTCGCGACTTCTTCTCCGGTCAGTGCGCCACTCAGGACATGTGACACAAAAGAAACAGAAAAGTACATTTTAATTTAAAATAACATTTTTTTTCCAGAGGAGGTGTAAGATTTACATTTT-TAAACAGGCTTGCCAGCATTCTCCTGAATTC---AATGAGTGTCGC-AGAATTAATAGACTTCATGACACCTAAAG------AATCAAGTG-AAAAAACAATTTTCTTTCATTCTTGCAGGATAATTAAGGATATAAATGAATAAACCATACATTTGTATGAAACGGTTAGATATGATTAAAC-------------GGAAGG--------------GCTTGCCAACGCTGTTCACCTTTAAGACGAACCCAGAAAGTAATGCTGTCAATCAATTGTTAAAAGATATGCCAAGGG-----AAAATAAAGACAAATAAGGGAGAAAATATAATTTAATGCCTTTGAAA a score=20065.000000 s hg15.chr12_random 398740 163 + 590431 AAACTAATAGTCAGCAAGATAGTCAGTATTATAATTACTTGTGCTGTCA---CAAACAGGGCTTCCAGCAGTGCAAAATGAGTACACCTTACTGAATTACTGAATGTTATAAAATGCTTAAGTATTTTGCAGAATTCATTTTCCCC-ATTTACGGATTGTCATTGAC s mm3.chr10 7798819 162 - 130738012 AGACTAATGTCTGATGTAATGACCATTAATAGAAATACCCAC--CATCATTTCCATCAGCACTGC---CACTGTGAACTAAGTACACTCTGGTGAATTAATGAGCATTGTAAAATTCCTAAGTGTCTTGTAGGGTACATTTCCCCCTACTTAAGAATTATAACTCAG s rn2.chr7 60608743 163 + 139049774 AGACTAATATTCAGTGTAATGACCATTAATAGAAATACCCACAGTCTCATTTCCATCAGAACTGC---CACTGTGAACTGAGTACACTACGGCGAATTAACAAGCATTGTAAAATTCCAAAGTGTTTTGTAGAGTACATTTCCCCC-ACTTAAGAATTATAACTTAG a score=238.000000 s hg15.chr12_random 398903 10 + 590431 AAAGTGAAAT s mm3.chr10 7776993 10 - 130738012 aaaaaaaaaa a score=219409.000000 s hg15.chr12_random 398913 1932 + 590431 AAAATGAAACATTACACCCCAGAGTGTCAACT---CAGGTTGTTCTTAGTGGAAAAG-CAAAATACAAAATTTTATAATAGAATGTGAGAATTATGCCTAC---CATGTTATAGTTTATACATTAATCTAATATAAAATCAAACATAGCAATTCAAAGAATTAATTAATACCTCTTCTCCTGGTTTGGGACAGAAGAAGGGATACTTTAGCCAACATCTGCACCAGAGAAACATTTTCTCCATTTAGGAGGCTGTGTGAGCAGTAGCATGCAT----CTTAGTAACAAGCATTACTTGAACCATAGCATGTGATAAAAAGAAAAAAAGACTAAG--GCCAACACTTTGGGGAGAGGCTTTCTTATTATTCAAAAGGcataacacattagagctgcaagggatctagaccaatttcctcactatacagacaagaaaatgggggtttggatttgagaagtgactcgcccaaggtcacacagtgacttagccaggacaaaaatcacgtctcctaactcccaatccaattatcttttcactaccatgTGGGTACTCAATAAACATTGGTTTCTCTTTCTTTTAAGCAGCAGGAGGAAAGACAGAGAGAAAGGACATTGCCATTTATTATTGTTTTTTGTATTTTTT-AATATAAGGACTTTAGAAAGACAATACCAAAGCGGCAATGTGTATTTTATTTCCCCAGAGCATGATGTGCTCTTGGGTAAATGTGTTTTATGAAGAGATTTGTCCTGGGAAGTTGGCAGATTTTACTGTAAATATTTTAACAGTTTCCTATTATTTAGTTGTGGGATTAAATTTTTATCCCAGCTGCCCCAGACCGATGTCTGCAAGTTATAAGTGGTTTTGTGAGGGAGTGCTGGCAA---GAATTATGGCTTTCTTCTTTAAAGAATGTTTTGGTAGACATTCAAAGAAGAACTTCTCCTG-TCTGCAAGAAAtcagctctcagcttcttca-gcttcccaccagcttcagagaactgctgtgctgcaggtcaaggccttctggtgctatcca--tatctggtgaccaag---caagacatgaggagtagaaaggcttagacagtttgaccaacgcagaagagctctgatgaacag----tactcacttcagagctccctgacag--tgatcaaggctttttcagacccacatcacaattcaaattctccctccacccaatatgcttctcctcttaaccttcataaaggttaatctctaataaatatctcataggcagaactctgcctcactgtctgcttcca-ctcaatccaacctgcaacaAATGTC-----TGC---------TTGGTTTCTCAGGCAGACACTCTAGCCACAAGTTTTCAGCCAGCCTAGGGTGGTGCCCAGTTC---ATACTAGAACCAGCTTCCCCAGGGCTGCCAGGACCATCAGAAGTAGGTTTTATGTCCTATAGGAACAGGGAAATACAAGAGACTAGCTGATCAAAGACTATAGGCCTTGCTTGCATCACATCAAAAAGTTAGCACATGGGGTCAAATTAAAACAGCCTTGACTGTAGAGAGAACAGATGAGCCC--CT-GGTAGACAC--CAGGGAAGAACCCACTGTTCATGTTTTATCTTGATCAGCTTCTCAGGATcaggtgctgtgctgagtgctttacatatgttgtgcctttaaatcctcacaaccaccttctgttctaaggcagatttctttatcctcattttacagttttaaaaatagtctcagagaagttaagtaaa----ttgtccaaggttaccagtca---gatcacagatgcctgaaataCCTTGAACAATGAACAAAGTTCTTCATTTTACACAGAGAAGGTGGGCTTAAAGCCCCTAAGCATCTCTGAGGA-GGAAAGTTCAGAGAGAACAATGACTGGGTTTCTGAAGCCTGTGTGTTCTGTCTATGTAGACTGATCGTGTAATTGACC-TATAGCACTGCGAGAATGGGG s mm3.chr10 7777003 1864 - 130738012 aaaaaaaaaCATTACTTTCCAGAGCAGCCACATTGCAAGTCACAAGCGGTGGAAAAG-CAAAATGCAAATGGAT-CGAAAGATTCTATGGGCTGTGCCTTCTTTCATTTTACAGTTTATATACGGTTCTAATTTAAGGCTAAACACAGAAACTCA-----------------GCTCCTTCCTGTTAAAGATTGGA-AGTGGATACATCAGCCAGTGTCTGTCCCACAGAAACACATCCCCCGCCTCATAGATTAGGTGACTGGTAGCATACATACACCTTGTTCACAGGTGTTGCTTGACTCACAG----------AGGGGACAAAAGCCCCAGGGGTCCACCTTTTAGAGAAAGGCTTCCTTGTT-TTCTGAGGCCACAGCACAGTAGAGATGGAAAGAatcgaacccaatgtcctcactacagtgataagggaagtgaggtttggactttagtagtgacttgcccaaggtcacatgatgactgtgccagaatgaaaat--agtctcccaactcccaattcAATCATTATTTCAGGAGATTGTGGGCATTCAATAAATACTGGTTTCTCTTTCTTTAAAGGTGTGGGAGGAAAGACAAAGAGAAAGTACAATGTCATCTATTGGT-TTGCTTGTCCCTTTT-AATATA--GACTTTAGAAAGACAACGCCACCGTGGTGGTCTATATTTTATTTCCTGGGAGCACGATGTGATCTTGGGCAAATGTGTTTTATGAAGAGATTTGTCCTGGCTACTTGGCAGATTTTACTGTAAATATTTTAACAGTTTCCTATTATTTAGCTGTAGGATTAAATTTTTATCCTCGCCTGCACAGACTAATGTCTGCAGATTGTAAGTGGTTTTGTGAGCCAGTGCCTGCGACAGAAGCTATAGCTTTCTCCATTAATGAACACTGTGGTAGACATTCA---AAGACTTCCTCCTGCCCTACGTGAAGTTAGCCATCTACTCTCTGAAGAATTCTATCCGTCACAGATAACTTCCTTATTGGATATCAATCTCTTTTAGCACCATCTATGTATTTGATGATCAAATGTGGTGGCATAAGGAA---------CTAGA--GTATGATCACCTCAGGACACCTCAAGTGCACAATAAATACTGACTGGAAGG-TCACTGCCAGAGTGGCAAA-TTTTTCTCTGGTCAGTATCATAACTCA---TCTCCCTCTACCCAACTCTGTTCACTCCTTAACCTTCATGGGGACAGATTCCTAATCAGCATCTCAC--GCCTCACCCTGCCTCAGTGTCTGCTTGCA-TTAGATACAATGTATTACATAGCTTTACTTTGCTACATAGTTTTACTTTCTCCAGCAGACATCTTAGCCACAAGCTTTCACCCAGCCTAGTCCAGTTCCCAGTTCTTTATGCTGATAAAGAATT------------------------------------CCTCCCAGCGAAATACAAA-----AAGGGAATGACCAATCAAAGG----AGACTTTCCATG--TCCAGTCAAAGCCCTGGTACAAGGG--TGAGATCAAACAGTCTAGACCGAAGAGAGAGGAGGTTAGCCCTGCT-AGTGTGAATTGCAGGGGAGAACGCTCCATTTATAATTAAGTATAATCCAAGTCCTTGGGCCAGGTGATATGCTGAGTTAATT-TGTTTCCTGTCCCTCTAATGCCTTATGATTG-TTCATGCTCTAGAATAG--------------CTTTTACTGTTTAGGAAACAGGCTTAGAAAAACTAAGAAAAGTGTTTGTTCAAAGCTACCAGTCCTCTAATCACAGATA-CTCTTGTGCCACTAACAATGAGCTAGGGTCATCCTTCCACTGTGA-AAGGGGCGCTCAAAGTCCCCACAC--CTCCAAAGATGGAAAATTCATACAAGTC-ATGGTTGTGTCTCCAGGACTTGTGTCTTCCATCCATGTTCAAGGTCCATGCATCTGACTATACAGCTCTGTAGGGATGGAG s rn2.chr7 60590067 1802 + 139049774 AAAGTAAAACATTACTCGCCAGAGCAGCCGCCTGGCAAGTTACAAGCGATGGAAAAGGCACAACACAAAGGCGT-CAAACGACTCTA--GATTGTGCCTTCCCCCATTTTACAGTTTATACACAGTTCTAATTTAAGGCTAAACACGGACACTCAA----------------GTCCCTTCTGGTTGACGATAGGA-TGTAGACACCTCCGCCAATGTCTGTCCCACAGAAACAGGTCCCCTGCTTCATAGATTAGGCAATGGGTAGCGTACAT----CTTGGTAAGGTAGGCTGCTTGACTCATAGC---------AGGGGACAAAGGCCCAAGGAGTCCACCTTTCAAAGAAAGGCGTCCATGTC-TTCCGAGACCACAGCACAGGagagctggagggaatggaacccagtgtccttactgtagcaataagggatgtgaggtttggactcaagcagtgacttgcccaaggtcacacaatgactgtgccaggatgaaaat--agtctcccaactcccaattcAACCATCATTTCAGGAGATTGTGGGCACTCGATAAATATTGGTTTCTCTTCCTTTAAAGGTGTGGGAGGAAAGACCAAGAGAAAGGACAGTGTCATTTATTAGT-TTGCTTGTCCTTTTTTAATATA--GACTTTAGAAAGACAATGCCACAATCACAGTCTGTATTTTATTTCCTCGGAGCGTGATGTGATCTTGGGTAAATGTGTTTTATGAAGAGATTTGTCCTGGCTACTTGGCAGATTTTACTGTAAATATTTTAACAGTTTCCTATTATTTAGCCATAGGATTAAATTTTTATCCTTGCCTGCCCAGACTAATGTCTGCAGATTGTAAGTGGTTTTGTGAGCGAGCGCCTGCAACGGGAGCTACAGTTTTCTTCACTCAAGAACACTATGGGAGACACCCA---AAGACTTCCTCCTGCCCTACGTGAAGTTAGCTATCTACTCTTGGAGGAATTCTATCAGTCCCAGATAAC-TCCTTACTGGATACCAACCTCTTCTGGTGCTATCTGTTTAACCGATGATCAAAGGTCGTGACGCGAGAAA---------CTAGACGGTATGATCACCTCGGGACTACTGAAGTGCACAGTAAATACTCACTCCAA---------------TGACCAA--TTTTCTTTGGTCAGCATCACAACTCA---TCTCCCCCTACCCAACTCTGTTCCCTCCTTAACCTTCACAGGGACAGATTCCTAATCAGTATCTCAC--ACCTCACCCTGCCTCAGTGTCTGCTTCCGTTTCCATACAACG------------------TGCTACATAGTTTTACTTTCTCCCTCCGACCCCTTAGCCACAAGCTTTCACCCAGCCCCATCCAGTTCCAAGTTCTCTGTGCATCTAATGAATTCCTC--------------------------------CCTCCCGGAGGAAAACGAAAGGTTAAGAGAATGACCAATCAAAGA----AGACCATCCATG--TCCAGTCAAAGACCTGGAAGATGGG--TGGGATCAAACAGTCTAGAATGAAGAGAGAGGAGGTTAGCCCTGCTAAGTATGAATTGCAGGGGAGAATGCCCCGCTTATAATCTACCATGATCCATGTCCCTGGGCC-------ATGCTTA--------TGTTTACTGTCCCTTTAACGTCTTATGATTG-TTTATGCTCTAAAATAG--------------CTCTTACTGCTTAGGAAATAGGCTTAGAGAAGCTAAGAAAAGTGTTTGCTCGGAGCTATTAGTCTTCTAATCATAGTTA-CTCAAGTGCC--------------AGGGTCATCCTTCCATAGTGA-AAGAGACGCTCCAAGTCCCCACGCATCGCAGAAGACGGAAAACTCACACACATC-AAGGTTGTGTTCCCAGGACCTGTGTCTTCCA-------------TCCACGAGTCTGATTACACAGCTCTGGAGGGATGGAG a score=6293.000000 s hg15.chr12_random 403184 100 + 590431 CCTCTGCCCA----CCCCCCACAACCTTATTAACCAAATCTCTTCTTGATGTCATCTTTCCTATAGACCCTCAGTCAAATTATCCTTTAGAGTCTTAAAA-----TTCg s mm3.chr10 7782455 92 - 130738012 -CCTCAGCCATACTCCTCCTGATACCCTACT--CAACAACTCCTCTTGACT---TCTTTTCTGT--GTCTTTGGACAGGGTATCCCTTAAAATACA---------TTAT s rn2.chr7 60598259 102 + 139049774 TCCTCAGTCATATTCCTCCTGAAACCCTATT--CAACGTCTCCTCTTGATT---TGTTGTCTGT--GTCTTTGGACAGGGTATCCCTTAAAATTCCAGTGCTTCCTTAT a score=43043.000000 s hg15.chr12_random 403592 437 + 590431 GTCCTAAAACTCTCATACGATGA---CCATAGAGTTGATAGTTTTCCTTCTCTGCAGGAAACA---------AATGGAACTGGCAAACTGTGACTATTGCCTCTTGTTCTTAAGTAAGATCTGTGTGTCCTTCTCTAGAAGATACATTTCAATATAGTACAGAGAATGAGATGTTAGGCAACCTCCTGTAAGAAACATCTCTGTCCAAAATTATGCTAGGTTAGTGTTGAATATCACTATTGAAAAGCAGAAAGTGGCCTGCCTCTGGAACCACCACTATAGAGGCATGCAGTCATGACTGGATATCGTTCCTGCCAGTTACTTCTGTCGCAGGAGAGCTCAAAAAAGAGGTAAGGTCACCTAAGCCCCATGAAG--GAATGATTCTATCCCTCCC--TCCACCAAAAAAAAAAGATCCAAATCTAGTTGTATATTTGTGGAAAAAAATTTTT s mm3.chr10 7782547 408 - 130738012 GTTGACAAATCATCTTGTTAATA-----------------GATTTTTCTCCCAGAGTAAGGTAGGGGTTTGGAGTAGAACTGGCAAATTATAAATGTCACCTGTT-TTCACCAGCAAAGTCTGTATGTTCTTCTTCAGAAGCTGCAGCTC--------ACG-------------TCACCAAGTCTCCACAAGAAACATCTTTGTCCCGTATTGTGTCAGCTTGGCATCTAACACTGCTACTAAAAGTCAAAAGAGGAACTTCT---GGAATTTCCTCTAGAGAGACACGCAATTATGTCTGGATGTCATTTCTGCCTATCACTTCTGCCTCAGAGGAGCATAACAAA---CCAAGATCACCTTAGCTCTGGAAAACGGGATGAGTCTATCCTTCTCCTACCACAGAACAGGAAAGGTTAAAAGATAGCTAGAGATTTGTAACAAATAACCTTT s rn2.chr7 60598361 431 + 139049774 GTTGATAAATCATCTTATTAATAAATTAATAGATTTAATAGATTTTTCGAGCCAAGTAAGGTAGAGGTTTGGAAAAGAACAGGCAAATTATAAATGCCACGTGTT-TTTGTCAGCGAGATATATATGTTCTTCTCCAGAAGCTGCATTTC--------ATGGAGAGGGTGAATGTCACCAAGCTTCTACAAGAAAC--CTTTGTCCCGTATTGTGTCAGCCTGGCATCTAACACTTCGACCAAATATCAAAAGAGGAACTTCTTCTAGAATTTCCTCTACAGAGACATGCAATTATGTCTGAATGTCGTCTCTGCCTATCACTTCTGCCTCAGGGGAGCATAGCAAA---GTAAGATCACCTTAGCTCTGGAAAA--GGATGACTCTGTCCTTCT---ACCACAGAACAGGAAAGGTTAAAATA-AGCTAGAGGTTTGTAACAAT--AGCTTG a score=48908.000000 s hg15.chr12_random 406061 393 + 590431 AAATGACTGGAGGTAGGAAGGCTTCTGGTTCTTAACCCTGAATGAATTGTATGGCTCCCTATAACGATGGC-TCTCTTAAGAATGGGAGGTACTTAACCTCTCTGTCCCTAATTTTGATATCTAGTCCCTGTATCCCAGGCA--ATATGAAAAGTGCCATGCAACATCCTGTTACAAATAGAAACACAATCCAGGGCTTTTAGAGGCAAAGAGCTACCTTTTCCATGACCCTGACAGTTCTCTGGAATACACCTGATAAAAATTAATAATCTCAAGATATGTAAGA-----TATAGCCTCTAACCTGATAATCTTCTTTTGGGAGCTTTAAAACTATTTGTTTGTATAGAGACTAAGATCCTAGAGAGTTACTCCCTCTTGGTAAAGTTTGGGTCCTTTAT s mm3.chr10 7783587 378 - 130738012 AAAGACCTCAAAGTAGCACGGTTCAGGCCGCTTAGCCCTGTGTGGAGGATGTATTTCCTCATCCTGGAGACAGCTCCTAAGAATGAGAGATACCTAATCTC--TGAGGCTAGCTTTGAAATCCGGTCCCTAACCCTGAGACA--TTGCAAATGGTGCGACTCAACATCCTGTTACAACTGGAAACCTGATCTAAGGCTTTAAGAGGCACAGAGGTGGCTACCCTATA-CCCTGAGTGGGCTCTGTAATACCTCTGATAAGGAC---TATCTTTAAGACAAAACAAA-----TTCAGACTCTAGTTTGATAATCCTCCCTTGAGAAC----------TTAGTTTAGACAGAACCTGAGGTCCTAAAGAGAAACGGCCTCTTTGTAAAATGTGGCCTCTTTAT s rn2.chr7 60599446 386 + 139049774 AAAGACCTGACTGTAGCAAGGTTCAGGCCTCTCCGCCCTGTATGAAGGATGCATTTCCTCATCCTGGTGAC-TCTCCTAAGAATGAGAGATGCCTAATCTCCCTGAGCCTAGCTTTGAAATCCTGTCCCTAAAGCTAAGACACATCGCAAACAGTGCGGCTCAATATTCTGTTATACCTGGAAACATGATCTAAGGCTCCCAGAGGCACAGAGACTGCTACCCTATG-CCCTGAGTGGTCTCAGTAATACCTCTGATAAGGAC---TATCTTTAAGATAAAACAATCAGATTCCAGACTCTAGTTTGATAATCCTCCCTTGGGAAC----------TCTGTTTAGACAGAGCCTGAGGTCCTCGAGAGAAGCTGCCTCTCGGTAAAGTGTGAGCTCTTTAC a score=195738.000000 s hg15.chr12_random 408224 1903 + 590431 ATGAACACTAAGAAATGTAGAGACAA-AGGGTTTTGTCTCACTAATCTTGAGTAACCTTAAAGAGATTTTTCTGAGTAACCGGTATACTCAATTGGAATTCAGTCCTTCTAATGC----CAATATGACCCTGTCTCCA-ATTAAAAAATAATACATATGTCTTAATGTATATGCAGGTCTCCCCTTGTTGAGGTATTCATGGAT-TTTTGAGACATTCCAATCTAA-----TTGCCTTTCAAGTTTTTCTTTGATCCCATTACCTAGCATTATAATCTTAGGTTCACCTGGAATTCTTTTCTAGGCCTTGCCTAACCAGTA--CCTCAGCTAGAATGGACCACACCCTCAGCCTGATCC-----AGAGCTAG------------------------------------------------------GCCTTAGC--------------ACAGACTTACAGCATTTATTAATGTATCATTTGCTTTCAGTTCCAAGACAAAAAGATTCATGAACCCA--CTATGTATTCTTGATATGAACTCTAGTAATATTCCTTCAGGTTCTTTCTTGTAATT------------------------------------------------ACTT-----AAGAATCAATATGGATAGGAATTGGCTCTCGAGAATTAAAATCCAGGTCCTGTTCAATGGTGTAGAATAAAGGATAAGACATAGATCTAGGCAATGCTAAAGCCCTTAAAAAGAG--TTTTAAAATCTGTGCTCTGCAGAGCCTGGGGTTCCTCAGAGGTATCATAGGAGCTTTCACAGAGGGGGGAAATTCAGAAGTGAGGCTCTCCTTGCTCTCTCTCC---------CACATTCTGAACCGAAAGGA-TTTTATTTTACATGCTTTATATATCAGGCTTCTAACTAAGATTTTATATGA--AAATACAGTTTTGCTGCCAAAAAATAAACATTTGC-TATATGAATTTCCTTAAATAGA-atatatatattctatttatatatatatacacattatatatatatatataCTCTTGACTTATCAAATGAGAATAAATTCTGCCTTAAGGAGAAGCTGAACTTAATTTTACAAATTACTATCATAAAAAAAGTATATTAATAACTATGACAAAATATAAGCATCATTTTTAAGGTTCATTCTTCAATATTCAGCTGTACTAAATACTTTCCTCCAACTCTCACTCAGCCACAAAAATGCTTTCACAG-ACTATAATTTAATATTATGCCTTGGCCTTTATCA-GAGGTTGATACAAGGAACTGCAATATGACAAACATTTCTGCCTTATTTGTGAAATTGCTGTTGAAGATACCATCCATCTCCCTTTTATAAAGATCCAGGCAATTA-CTCTCCTTAAAGCTAAGGGACAGAAAACTCTTCT-CTTTCCTATTTTTGAAATTCCAAGAAACCTGTAATCCCTTAGGTTTGCCTTTAGCCTCCAGTAAACTGAAAGTTAAATTTAGTGTTTAAGCAGCAGGGGATGGGGCAGGGGTACATTCAGATGCTGTGTTTTTTGACCCAATTACCACCCAGTTCTTTTCTAattcagccaacatgaattgagtatttaggtgctaagcactgtgatagacgccaagggcacaaagattattaaaacaagatgctttccctAAAAGAGATCTTGGATGAGTACCTCTTGTTCTTTCATTTTATTTTCATGATCTTTCTGTATATGGACCTTTATTTGTAGCCTATCTCATACCTATTTTTGAAAACAGATATGGTATTATATACAAGTAAATAAAATAAATTAGCATATTCTAGAAAAAGAAGGCATTGACTTAAATTCATCTAGAGGCGTAGATAACTA----ATACTATATTCTTCTCTCTTAGCCTCCTAAATCATCTCA--AAGACTGAGCCCCTCTTCCAACCCATCCTACACACAATCATCTGATTAATATTCTAACAAGCCTATTCTAATCATATCATTCATCTTCTACTCAAAAATACT--ACTGTCAGTAC--CACACACATTGCCTTCAAA--ATAAAGTC----ACAAAAC----------------AGTAGCA-----AACCTg s mm3.chr10 7783965 1937 - 130738012 AGAACCACTAAGAGCTGCATAGATAAGAGGATCTTGTCTCCCTCAAACTGACTAATCTTATACTGATTTACCTGA--------TATACTCAATTAGAACTCAACAGTACTAATGCTAATCAATATGTCCTTCTCAGTAGAAAAAAAAAAAAAAAGTCTCCCCTAACATA-GTGCTGGT-TCCCATTGTCAAGGGATTCATTGATGTTTTCAGACATTACAGCCTAAAACCTTTCCATCTTTATTCTTTCTATGATCCCACTGCACA----------CACAGATTTCCTTGAGATTCTGGCCCAGGCCTTGTGTAACCAGTACGCCTCAGCTGGAGGGGTTCACACTCTTAGCCTGACCCTAAAGAGAGCCATGTGAGGACCGGGTCAGAAAAGCCAGCATCTCAGTACAAATCTGAAAACGATCTAGCCTGAGCTACATCTCAGGTGTGCACACTAGTAGCA-CTGTTAATGCATTGTTCGCTTTTGGTTCTAAGGCAGAAAGGTTTATAGATCCA--CTGTGCTTTCTTCATATGGATCCCAGTCATGTTCCTTCAGACTCTTCACCGTCATCTCTCAAGAATTTCTAGTTTATATGGGAAATACACTCCAAGTGAAAATTATTTTAAACAAAAATCAGCAAAGATAGGACTTGGCTCTTCAA--TTCAAACTCACCCCCT-ATTAACGGT------CAAAGG------CA-AGAGCTAGGTGGCACT--AGACTTTAGAAATAGGTTTTTGAA----GTGCTTGGCAGGGCTCTGTCATTCTCAGAGGAATCCTGAAGGCTTTGGTAGTGGTTGGCAA-CCCAAAGTGACTGTCTCTCTGCTGCTTCTCCATCTCTTTATACACTGTCAACCAAGATCAGGCTCACTTTGTCTCCTTTATACATTAGACCTTCACCTAAGATTTTGTATGATTAAAAACAGTTTGTCTCTc---acacacacatatgcatatatgcacgcatgtacacaaacacacacaca-caAATTTCTCTATGAATTTCTTTAAACTGTCAACATGTCCTTCTGCCTTGTCAAATAAGAATAAG-------AAAAGAAAAAGCTGGACTTG--CTTACAAAATGTTATC---AGAAAAGAACATTAGTAACTCTGCCCAGGTGTGAACACCATCGTAGGACTTGC-TCTCCGACAGTCAGCTCTGCTGAGTAACTTCCCTAAACTCTTACTGGATCACAAGCATGCTTTCAAAGAACTGTGATTGAACATTGCA------CCTTTATCAGGAAGTCAGTATGAGCAATCTCAGTATGACAGACATTTCT--CCAACCTATGAAACTGCTATTAACTAGATGGTTGATAATCTCTACATTAAGATCCATGGAAAGACCTCTCCTCACAGCCAAGGGCTAGAAAAATCTTTGACTTCATTATTTTTAAGATATTAAGAAACATGTAATTCCCTGGGTTTGCTGTAAGCCTCTGGTAAACTTAGAGTTAAATTTAGTATTTCTGTTCAAGGGA-------AGATCTATATTCAGATGTTGTGTTTTCTGACCCAATTATCACCA-CGTCTCCTttaattctgccatcattaattgagtctttaagtgctaagcatggtgataactgccaggagcataaagattatttaaacatgacactttccctcaaagagatcccagtcaaatggTACTTGTATTTTTATTCTATTCTTATGATTTTTCTGCTTACAAATGGTTGTTTGTAATTTA------ATCTATTTTCAAGGATATAGATTGAACT----------------AACAAATGAACATATTGTGGAAATAGAAGGAATAGACTTAAATTTCCCCAAAAG-GTAGATCACTA----GTAGAAAATTTTTCTCTCTTAGCCTTCTACATCTTCTCA--CAGAAAG------------------------------------------------AATGAGACTAATTTAATCACG-----AATTTTCTACTAAAATATGGT-AATAGCTACAGC--CACACACACTGGCCTCAAA-TAGAAAAACTAAAACAAACCAGAGACAATCTCAATGAGAAGAATGTAGCACCTC s rn2.chr7 60599832 1870 + 139049774 AGAACCAATAAGAACTGCACAGATAAGAGGATCTTGTCTCCCTCATCCTGACTAATCTTATACTGATTTACCTGA--------TATACTCAATTAGAACTCAACAGTACAAATGCTAATTAATATGTCCTTCTCAGTAGAAGAAAAAATCAG--GTATCTCCTAATATA-GTTCTGGT-TCCCCCTTGTCAGGGATTCATTGATGTTTTCAGACATCGCAGCCTAAAACCTTTCCCTCTTTATTCTTTCCATGAGCCCACTGAACA----------CATAGGTTTCCTTGAGATTCAGCCCCAGGCCTCGTGTAACCAGTACACCTCAGCTGGAGGGGTTCACACTCTTAGCCTGACCCTGAGGAGAGCTGGGTGAAGACCGAATCAGAACAGCCAGAATCTCAGTACAGATCTGAAAAAGATCTAGCCTGAGCTACATGCCAGGTGAGCACACTGGTAGCA-CTGTTTATGCCTAGTTTGCTTTCTGTTGTCGGGCAGAAAGATTTATCCATCCATCCCGTGCCTTCCTTCTATGGATCCCAGTCATGTTTCCTCAGACTCTTCACTGTCTTTTCTCAATAATTTCTAGTTTATATGGGAAATATACACCaaataaaa---atttaaaaaaataattatCACAGATAGGACTTGGCTTTTCAG--TTAAAACACACGTCCA-TTAAACGGT------CAAAGG------CA-AGAGCTAGGCAACACTAAAGACTTTAGAAACAGATTTTTGAA----CTGCGTGCCAGGG------CATTCTC--AGGAATCCTGAAGGCCTCGGTATTGGTTGGAAA-CCAGAAGTCACTGTCTCTCTGCTGCTTCTCCGTCT-TTTATTCACGGTCCGTCAAGATCAGTCTCACTCTGTCCCCTTTATACATTAGGTTTTCACCTAAGATTGTGCATGATTAA----AGTTTG--Tcac---atacacacatgcacacgcatgcacgcatgcacacaa--acacacgta-caAATGTCTCTGTGAACTTCCTTGAACTGTCGCTATGTCCTTTTGCCTTGTCAAATAAGAATAAG-------GGTA-AGGCAGCTGTACTTG--CTTAGAAAATATTATC---AGCAAATGACACTAGTCACCCTGCCGACATGGAAGCAGCGTCACTGTAACTGC--CTCTAACGGTCAGCTCTGCTGAGAAACTTCCCTGAACTCTCACTGGACCACAAACGCGCTTCCAAAGAAATGTGATGGACGACTACACCCTGGCCTTTATCAGGAAGTCGGTGTGAGCAATTTCAGTATGGCGGATGTTTCT--CTCGCCTCTGAAACTGCTATTGACTAGATGGTTGATATTCTTTACGTTAAGATCCATGTAAAGACCTCTCCTCACAGCCAGGGGACAGAAAAGTCTTTGACTTCATTATTTTTAAGATACTATGAAACACGTAATTCCCTAGGTTTGCTTTGAGCCTCTGGCAAACCAAGAGTTACACTGGGTGTTCAGTCGGGAGGGA-------AGATCTATATTCAGATGCTGTGTTTTCTGACCCAATTATCGCCCTTGTTTCCTTTAATTCTGCCAACATTAATTGAGTCTTTAAGTGCTAAGCATGGTGAAAAGTGCTAGAAGCATAAAGATTATTTAAACATGACACTTTCCCTCTAAGAGATCTTGGTCAAAGGGCACTTGTCTTTTTGTTCTATTCTCATGATTTTTCTGCACGCAAATGGTTGATTGTAATTTA------AT---------------------------------------------AAATGAACGTATTGTAGAAATAGAAGGTATAGACTTAAATTTCCCCAGAAG-GTAGATCCCCAGAAGGTAGTAAATCATTCTCTCTTAGCCTTCTGCGCCTTCTCACTCGGACAG------------------------------------------------AATGAGATTA------------------------ACTCAAAAATGGTAAATAGCTACAACCACACACACACTGGTCTCAAAGTAGAAAAACTGAAGCAAACC----------------AGAAGGATGTAACACCTC a score=146539.000000 s hg15.chr12_random 410855 970 + 590431 TAGTCCTTGGTTGAAAGTCTTTCGCCACAGAGGAAGCTAGTGTTCCTAGATTTTGTCACTTGCAGAGAAACTTAAAATGTGTTCTCTATAAAAAGGAAGGTCTTCTTTACTTTCAATGTAGAAGATTG-CCCGGAATGACAATATATATGGTTCATTTGCAGTAGCTGATGTTTGTGTAGTTATTTAGTGTCATAGAGAAAAGACTTGATACTTTATGACGAGACTTTAGTGCCAATTTAGTCATGCAAATATATAGTGGCATAGAGACAAAAATCCTTTAGCT-ATTTATTCTGATTCCAACTGTAATTTTTCCACTGTTCTTGCCAGAAAAGTGTTAGTAAACTAATTTCTTTCTTCCCCAGACTTGTGTATCTTGTACATAAAATAGAAATCTCTACTTCTAATCATGCTTTAGTCCAACAGGGCTTCTAAGCCATACATTAGAATAGACTCTATTATTTAAAGAAGTATATTTACGGGGTTAAGAATACTAAGAAGACTCAAGAAATAAATTCTTCAGTTATGTTTCATTTAGCTATCAGATACAGTTACCTAGTGAACTAGTGAAACAAAGTAATGTTAGCCTTTAGAGGTTTATGGTTCTAGGGAGGAATAGGGAAAACCATGGAAAGCTGTAGTGCAAAATATTTTCAATAAAGTGGACATTTTTGATTTAGTGTATTCCTCTGAAACAGCAGGCCCATCTGTAAAATACACAACAGAATGCTATTGCTTTGGGAAATGTGTAAGCATCCTTACACTGCAGTCAACTCTATCTAGAGGAGAAAAAAAGATGATCTCTAGAAGCTTTTTCCTGCCACACTCATTAGAGAGCATTTTTTAATTACATTCACATTCTCAGATACTGTTTTGTATGCACAGTGAACAATGCAGAGAAAAAATTTAAAATGAATATGATTTTCTGCAAACTACTGGAAGAAATGTCAGTT--------TCTTACACAGATAAAACAGC--------- s mm3.chr10 7791961 944 - 130738012 ------tTAGCTAAAAGTCCTTCTCCAGAGAAGGAGATGGTATTCTAGG--TTT-TTCCTTGCACAGAAGCCTAAAAGGTGTT-GCTATAGAAAGGCAAGTCTTCTGTA-----AGTGCAGACTAATGGCTTGGAATGACAATGGTTATGGCCTATGTGTAACATCCACTGTTTATAAAGTTATTTAGCACCATAGACAAAAGACTCAATACTTTATTGTTAGACTTTATTGCTAATTTAATAA--CAATTATACAGC--CATTGAGAGGAACATCTTTCTGTTGGCTCATTCTAATTTCAACTGTATTTTTTCTA--------GCCAG--ACATGATAGTCGGTTCATTTCTTTCTGCTTCAGATTTGTGTATCTTATGTAT--AACAGAAATCTCTATTTCTATGCCCTCTTCTATCCATGAGGACTTCTATACCATACGTTAGAGTAGAGTATATTATTTAGAGAGGTGTGTTTATGAGGTT-GGAATACTAACAGGACTCAGAGAATAAATTCTTCAGTTATGTTTCATTTACTTATCAGATACAGTTACCCACTGAACTATTGAAACAAAATAATGTTAGCCTTTAGATGTTTATGGTTCTAGGGAGGAATA-GAAACACAATGTAAGCATGTAGTGCAAACTATTTTCAATAAAGCAGACATTTCTGACTTAGTGCCTCCCATTGGAGCAGCAAGTCTCTCCATAAAATACACAGCAGAAGAGCGCTGCTTTGGAAAATGTGCGAGCGCCCTTACACTGCAGTCTAC-------AGCAGGAGGGAGAGAATGGTATCTGGAAGGTTATTCCTGCCACAATCACTACAGAGCA-TGCTTAATTCCATTCATGGTCTCAGTTACTATTTTGTGTACATAGTAAACAATGCAGTAAAAA---TAAAAATGGA-ACTCTTTCCTGCAAACAATAGGAAGAAATATGAACTGGACACTGCTCTACATAGATAAAGCAGCTAAGCAGTG s rn2.chr7 60602588 900 + 139049774 ------ATAGATAAAAGTTGTTCTCCAGAGAAGGAAATGGTGTTCTTAGACTTT-TTGCTTGCAAAGAAGTCCGAAAGGTGTT-GCTACAGAAAAGCAAGTCTTCTGTA-----AGGGCAGACTAATG-CTCAGAATGACAATGCGTGTGGCCT----------------GTTTATAAAGTTATTTAGCACTACAGACAAAAGACTCAATACTTTATTGTTAGACATCATTGCTAATTTAATAA--CAATTATGTAGC--CAT-------AAAATCTTTCGGTTGGCTCATTCTGATTTCAACTGTAATTTTTCTA--------ACCAG--AAGTGTTAGTAGGTTCATTTCTTTCTGCTTTAGATTTGTGTATGTTATGTAC--AATAAAAATCTCTATATCTGTACCCTCTTTCTACCATGAGGATGTCTATACCATATATTAGAATAGACTATGTTATTTAGAGAAGTGTGTTTATGAGGTT-AGAATACTAACAGGACTCAGAGAATAAATTCTTCAGTTATGTTTCATTTACTTATCAGATATAGTTTCCCACTGAACTATTGAAACAAAATAATGTTAGCCTTTAGATGTTTATGGTTCTAGGGAGGAATAGGAAACACAATGTAAGTGTGTAGTGCAAACCATTTTCAATAAAGCAGACATTTCTGACTTAGTGCCTCCCATTGGAATGGAAAGTCTATCCATAAAACACACAGCAGAACAGCGCTGCTTTGGAAAGTGTGCAAGCATCCTTACACGGCAGTCAAC-------AACAGGAGAGAGAGAATGGTATCTAGAATGTTCTTCCTGCCACAAGCACTACAGAGTA-TGTTTAATTCCGTTCATGGTCTCAGTTACTATTTTGTGTACATAGTGAACAATGCAGTAAAAA---TAAAAAT------------------------GGAAGGAATGTGAACTAGCCTCAGCTCTACATAGATAGAGTGGCTAAACAGTA a score=141569.000000 s hg15.chr12_random 411825 1054 + 590431 ACAGGCATAAGAAAACCCCC---------------------------------------------------------------------------------------------AG---------------------GAAGATAAGTCACCCTGACA---TTCCCAAAATTCAGAAATTCACTA--GACCCAAATGACACCACGAAAATGTGATGAATCATTCACTC--CTTAGAGATTTTACTTATGCATGGATTGATTGCCTGTGGC----ATAAAGGGG----TCCCAAGTTCTCTGGAGACTTGTAATCCAAAATTGTTTAGTCTGGATTTGAAGGATAGACAA-GAATATTTTAACAATGTTCTCTTTTGCATGATAATTTATCTCCTGCTTAAAGATGTGTGTTATGCTATTCCAAAATTCAGGGTCACTCTCCCATAGAAGTGAGGCATAAAGCTCTGATGGGGGCAGTGAATAATTTTAGGCTAGTTGTACACAGCTGCAGCTACTTGCATGGGTAATTGCTTTTGCCCAAATCACCAGCATTATTGTGGCTCTAAAAGACATATATTTAAAAGCCATTGAAGTGCCAAATCATATTACAACAATAGAGCCAGTTCTCCAGAAAATATTCATGTTTTAATTTTAACCAATCTCCACGAATGTGTTGAGCCCTTGCTATAGGACAAA---------------------AAGCTGCCAAGGTATTGTGATACGTTGATGTCTAGCATGACAAACAGAGAAAGGGTGTTGAAACTGCATATActaccggactctaagtttccatgatggaaaggatctattaataatgctagcaccaccgcctcacccagcttttggcataaaaaagacattcaataatttttt-taatgaatgaatACAATGTCTAATTCCCACAATTGAAATTGGAAATTTGCAAGTTGAAAGCAG-AAGGT------CCAGCTA-------------------------------------------------------------------------------------------TGATGCATGAGAGTGGCTGGTG-------GTGGCTGTGGAAAGTAAGGTGGTGACTACAACAAAAATGGATTTATCTGCTACCCATG-CAGGTGTTTGTCACACTTGAACTATCACATCC----CATTATTATATTATGTGATATAAG--ACATACA-AGAAGTGGAACATTATTCCTTGCTCTGGAA--AATGTTCCAATCTAATTAGACAAGA--TTTCTGAGAAGAATAATAACAGGAACATACAATCAAAGTGCCAG s mm3.chr10 7792905 1265 - 130738012 acactcatatacacactctc--acacacttacattcacacacgctcacacacttagactcacacacactctctcacacactcacgtacattcacattcacactcacgcac---agacaGAGATGTGGGGAGA----GAGGGCTAAACACCCTAATAATACTCCTCAAACTCAAGGATTCACTCCTGACCCGAATAATACCACG--AACTTGCGGGGTCATTCAGCCATCTAAGGAGATGTACGTATTTATGGGTTAGTAGTCTATGACCAAAAAAAAGGGG----TCCCAAACT---TGGAAACTTGGAACTCAAAATTGCTTAATATGAGTCTGAA-GATATATAAAGAACATTCTTATGATGTGCTCCTATGCATGTTGATACATCTCCTGTTTTAAAATCTGTGTTCTTTTATTCTGAAACTCAGGATCACTCTCTGGTAGAAGTGAAACACAGGGCTCAGGAAGGGGCAGTGAATAATTTCAGCCTAGCTGTACACAGCTGCAGCTGCTTGCATGGGTAATTGCTGTTGCCCAAATCACCAGCATAATTGTGGCTCT-ACAGACATATATTTAAAAGCCATTGAAGTGTCAAATTATATTATAACAATAGAGCCAGTTCCCCAG-AAATATTCATGTTTTAATTTTGATCAATCTCCAAAAATGTGTTGAACCCTTACTATAGGACAAAAA-------------------AAAATGTCAAAGTGTTATGACACATTGCTGTCCAACATGAGAAACAGAGAGACACT-----AACAGCATACACTGCCAGACTCTATGATTTCATGAT-GAAACAGTCTGTTAATCATCCCATCACCATCACCTGGCCTCACTATCGATGTAAGGTAAAC--TCAATAACTTGTTAAAATTAATGAATACAACTTCTGATTTTTACAGTCAAAAATAGAAATCTGGAGTCTGAAGGCAG-TAGGTTACT--TCTGCCAAAGAGTTAGTGTCCAAAATAAACTCAATAACTTGTTAAAATTAATGACTACAACTCCTAATTTTTACAGTCAAAAATAGAAATCTGGAGTTTGAAGGCAGAAGGTTACTTCTGCAGAAGAGTTACTGTCCAAAGCAAGATGA-ATCTTCAACGAGACAGGATTTGTCTGCTGGCCCTGACATGTGTCTGGCACACAGATTTTTTTCCATCTATAACATTATTATTTCAAGTGGTATGGGTAAAATCAA-AGATAAGGAATCTTGGTCAATACTCAGAAAAGAATTTTTCAATCCTATTAGACAAAA--CTTCT---AAGAACAAAAGGAGGAATATATAAACAAAACACTAA s rn2.chr7 60603760 1253 + 139049774 acacacatatacactctctctcacacacacacacatatacactctctctctctctctctctcacacacacacacacacacacacacacacacacacTC---CTCACACACCCAAGATAAAGAAGTGGGAAGAAAGAGAGGGACAAACACCCTAACA---CTCTCCAAACTCAAGGATTCACTCTTGGCCCGAATAATACCACC--AACTTGCTGAATCATTCCGTCATCTGGAGAGGTTTATGTATTTATGGATGA-TAGTCTATGACAACAAAAAAGGGGGGAATCCCAAACT---TGGAAAATCAGAACCCAAAATC-------ATGGGTCTGAA-GATATATAA-GAACATTCTGATAATGTCCTCCC-TACATGTTAATGCATCACCTGTTTAAAGATCTGGGTTATTTTATCCTGAAACTCGGGATGGCTCTCTGACAGAAGGGAAGCACAGGGCTCAGGAAGGGGCAGTGAGTGACTTCAGCCTAGCTGTACACAGCTGCAGCTGCTCGCCTGGGTAATTGCTGCTACCCAAATCACCAGCATAATTGTGGTTCT-ACAGACATATATTTAAAAGCCATTGAAGTATCAAATTATATTATAACAATAGAGCCAGTTCCCCAG-AAATATTCGTGTTTTAATTTTGATAAATCTCCAAAAATGTGTTGAACCCTTGCTATAGGGCaaaaaaaaaaaaaaaagaagaaagaaaaaGTCAAAGTGTTGTGACATGTTGATGTCCAACATGA-CAACAGAGAG----------AACAGCATACACTGCCAGGCTCTCCCAT---------------GTCTGCTAATCATTCTCGCACCATCACCTGGCTCCACTATCGATGTAAGGTAAAC--TCAATAACTTGTTAAAATTAATGAGTACAACTTCTGATTTTTACAGTCGAAAATAGAAATCTGGAGTTTGAAGGCAGTTAGGTTCCTTCTCTGCAAAAGAGTTAGTGTCCAAAATAAACTCAATAACTTGTTAAAATTAATGACTACAACTTCTAATTTTTACAGTCGAAAATAGAAATCCGGAGCTTGACGGCAGAAGGTTGCTTCTGCCAAAGAGTTACTGTCCGAAGCAAGATGA-ATCTTCAACAAAACAGGAGCCGTCTGCTGACCCTGTCCTGTGTCTGGCGCACTGATGTTT------------CAGTATTATTTCAAGTGTTGTGGGAAAAATCAATAGATAAGGAATCTTGGCCAATGCTCTGAAAAAAATATTTCAATCAATTTAGACAGAATCTCTCT---AAGAACAAAA--AGAAATATATAAACAGGATGCTAA a score=4126.000000 s hg15.chr12_random 413191 78 + 590431 ATCAATTGTGTGCTATAAATAAAgcaatgtcgtata---gtggaaaagagtataggatgcggaataaaaagacatctttaa s mm3.chr10 7794170 80 - 130738012 GCCAACTATGTGATGTGTA-GAAATAACATGACGTATTTTTAAAAATGAGTGTAAAATACAGAATCGAAAGTTTTACTAGG s rn2.chr7 60605013 71 + 139049774 GCCAACTACATGATATG-----AATAATATGACATA---GTAAAAATTAGTTCAAAATACAGAATCCAATGGTTTATTA-- a score=10027.000000 s hg15.chr12_random 413269 71 + 590431 gtcccaaagactgacacttaggtgctgtgtg-ctcttagtcaaatcactgaaactctAGATATAAAGTTTAC s mm3.chr10 7794307 70 - 130738012 gTACCAAATACTGCCACTTATGTATTGTATG-CTCTAAATCAACTCACTGAAAGTCTA-ACATAAAGTACAA s rn2.chr7 60605085 71 + 139049774 GTGCCAAATATTGTCACCTATGTACTGTATGACTATGTATCAAATCACTGAAATTCTA-AGGTAAAATACAA a score=7778.000000 s hg15.chr12_random 413590 82 + 590431 TAAATAATGTATTTTATTATTAAAGGAATGCATGTGGATAAACAAATGTGATGGTTATTTGTTTTCATACAAGAAGTCCAGG s mm3.chr10 7794771 58 - 130738012 TAAACA------------------------CATGCAAACAAGCAAAAATAAGGATTCTCTATTTCCATACAAAAAGTCCCAG s rn2.chr7 60605500 58 + 139049774 TAAACA------------------------TATGCAAACAAGCAAAGGGAAGGATTATCTATTTGCATACAAAAAGTCCCAG a score=49444.000000 s hg15.chr12_random 413672 690 + 590431 AGTAAAGGGCTGCTGGAGTTGGTTTAATGATTTAAGGCTGC------CAAGGTCATAGTCACTAGAGTTCTCTTGATCTTTCCCTCTGGTCCCAAGAAATCTATA-ACAGCTCTAACTATTGTGTCTGTGATATAAGAAGGAAGGATGGGGGAAGCAGGAGAATAGGGGAGAAGCTTTTTTGGAGGAGACAAAGCTTTCCAGATCAGAGTCAGGcttccactaatagctcatt-ggctacatttatgtcacatgctacccctgataacaagggaagttagaaaatgtaggctcttaaagctagacacatttctagcccagttaaaattagggttatgttagtacagaaaagaaggatgggaatgaataggccactaatagtgtctTTGTCAATATT--TAGAGAGTTGGTGTAAAGAATTATAAGAGATAATATATTTGAAAGTGTTTTGTTAACCATAAAGTTAAGGAAGTCAATTTATT-TTTGAATGCACTAAGTGTTATACCATTTTCACGTGCATCCGGTATCATGGAAAAAGACCTTTAAATAAAACA--TTTACGATAATTTTTCTAATGTATAAACATTACCTAAT------ATATGTTAGCTcacacacatacaca---cacacaaacacacac---aTTGCT-----GACTCAAACAGGAGGAGTGACTTTCTTTTTCCTGTATATTTTAGACAATATAAATTAAAAACA s mm3.chr10 7795091 638 - 130738012 AGTAAGACATTATTGGACGTGCTTTGGTGGCTGAAGGATTCATGCCACAATTCCATGATTGTGGGAG---TCTTAGCCTTTCTGGATCGTCTTGC-AAATCTAACTCCAAGCCTAGCT--------TTAGATAAAAGGAAGAAGGG------------------AGAACAGAAGCTGTATAGAGCCATATAAA------TAAA--GAAGTGAGAC-TCTGCTTTCAGATCCTTCAACTAGAATTACATGACAAGCTCCTTCTGGAATCAAGAGACATTTGAACAGCAGGGCTTCTAAAGTTGCCCATATTTTCATATTGGTCAGAATTAGGGATAGATTGGCAA---------------TGCTGAGCTGACAACCCACCAGACCTGGGCCATGAGTCCTCAAGACTTGGTGTTCCG----------GACTACATGTCTGAAAGTGTTTTGTTAACTGGCAAGCCAATGATGTCGACTTCTTCTCTGTATA-A-TAAATGCTACACTATTTTGATGTGCATGCAAACTCATGGGAAAGAA-TTTGGAATAAGATAGGCTTATCCCAAC-------ATGCAGATATTTCACTTAATATGGCAATACCTTACTTGATAAACATGTACATTTCACATTCATATATAC---TATACTCATGTGAATCAAAT---AAACATAAAGTTATCCACTATGCGTGTTTTAAAC--TGTAAATTTAATGCA s rn2.chr7 60605799 657 + 139049774 AGTAAGAAGTTATTGGACTTGCTTTGGTAGTTGAAGGATCCATGCCACAATTCCATGATTGTGGGTG---TCTTAGCCTTTCTGGGTGATCTTGC-AACTCTACATCCAAGCCCAGCT--------TCAGATAAGAGGGAGAAAGGAGACG---------AGACAGAGCAGAAGCTGCGTGGGACCATA-AAA------CAAA--GAAGTGAGAC-TGGGCTTTCAGATCATCCAACTAGAACTACGTGACAAGCTCCTTCTGATATCGAGAGACATCCGAACAGTGAGGCTTCTAAAGGCGGCCATG-TTTCAGATCTGTCAGAATTAGAGATAGGTAGGCAATGAGGAGAAGAAT-GTGCTGAAAAGGCAGCCCACCAGACCTGGGCCGTGAGTCCTCAAGACTCGGTGTTCGG----------GACGACATGTCTGAAAGTGTTTTGTTAACTAGTGAGCCGACGAGGCTGACTTCTGCTCTGAATA-ACCAAACGCTACACTATTTC------CACACAAA--CATGGAAAACAA-TTTAGAATAAGATAGGTTTACTCTAGC-------ATGCAGATATCTTGCCTAATGTGACAATACCTTACTTGATAAACATGCACATTTCACATACATATATACACACATACTCATAGGAATCAAAT---AAACATAAAGTTATCTTCCATGTGTATTTTGGACTGTGTAAATTTAAAGCA a score=42265.000000 s hg15.chr12_random 464675 275 + 590431 TGTTTTCTCACTACACTTCTAAACTATTTTAGAAGTAACGACGAATCTAAATCATTCTTACCCTCACATTTAATAGTGCTGGAGTAGGTACAGTCTCTGGTTCTTGTTTAACAGGAACTGCTGCTTCGGTCTCCAAACCTAGTTCTAATGCACTAAGTGGCACTGACTGGAGAGAAAACAACATCAGACAAAAAATAAAGGACAGCAGTAAATTCTGTTTCAAGGACAAGATTTGCATTTAT-----TAAAAA--------------ATATCAAGTTTAACATTCAAACTGACG s mm3.chr5 121772411 283 + 149719773 TATATTTTTCCTACCAGTCTAAGCTACTTTAGAA-TAATAACGA-TCTCTGCAGCTCTTACCCTCACATTTAACAGTGCGGGAGTGGACATCGGCTCTGGCTCTTGTTTGACAGGAACTGCTGCTTCTGTCTCCAACCCTAGTTCTAATGCACTAAGTGGCACCGACTGCAGAGAAAGTAAC-----AAAGAAAAGGGCGGACAGCAATGAAGTCTGTTTCAAGAACAAGAGTTGCATTTATTTTAATAAAAACTGAAAAAAACTAAAAACCAAAAACAA----AAAACTGGAg s rn2.chr12 14606991 256 - 46874691 TATATTTTTGCTACCAGTCTAAACTACTTTAAAA-TACTAGCAAATCTCTGTGGCTCTTACCCTCACATTTAACAGTGCCGGAGTAGACATCATCTCGGGTTCTTGTTTAACAGGAATTGCTGCTTCTGTCTCCAAACCTAGTTCTAATGCACTAAGTGGCACCGACTGTAGAGAAAGTAAC-----AAAGAAAAGGGCGGACAGCAATGACATCTGTTTCAA---CAAGAGTTGCATTTATTTTATTAAAGAC-------------AAACC----------------CTGCAG a score=4884.000000 s hg15.chr12_random 464950 89 + 590431 TTAAATCACTAACAGCAGAT--------------------TTATAATGT-----AATAATCTTTG------------CAAGCACAAGA-TCTCCACAAAACTGTACTAACAATTCCTTTTTTAAAAC s mm3.chr5 121772997 95 + 149719773 TAAAATCA--AACAGAATGTGCAATCA----TTACACCTATTGTAACAG-----ACTAAACTTGA------------TCAGCATAAAAATCTCCACAAAGCTAAACTAGTA---------TCAGAAC s rn2.chr12 14607526 115 - 46874691 TACAATCA--AACACAATGTGCAATCAATCGCTACACCTATTATAACATCACCCACATAACGTCACATATTATAACATCAGCATAAAA-TCTCCACAAAGCTAAACTAGTA---------TCAGAAT a score=11911.000000 s hg15.chr12_random 466125 217 + 590431 --GCTTTCAGAGAATGTATATAATGAAATCACAGAAGAATATCCCTAAATAATTAAACAACTATTAAGGAAATTAAAGATACTCCCACAAGAACACTAAACATCTCTTACACTATCTATACGTTTATAATAACATCAAAGCAGAAAATAATGTTTTGGTTTTCAT--------------TATTATTTTCTGCCTCATAAA------TCAAAATGAATA------------------CTCAA--------CATAAAAATAACATTT s mm3.chr5 121773099 195 + 149719773 --GCTTTTAGCAAATGTAA-TAGAGAACTTACAA--------------------AGGCAACTGTAAAAGAAATTAATATTCCTCCCATATAAATGCTAAGC--------------------------AACAG---------GGAAAGCAATGTCTTGGTTTTGATGCCAATAGCATCTATCTCATTTTTTTTTTAAAAAA------GCAAACTGCTTAAAATCATTCTTGTGTATCTTTAAAG------TTTATTAATAATATTT s rn2.chr12 14607648 212 - 46874691 TTGCATTTAGCAAATGTAAACACAGAAGTCACAATAAAG----ACCAA------AGGCAACTGCAAAGGAAATTAATGTTCTTCCCATACAAATGCTAAGC--------------------------AATAA---------GGAAAGCAATGTCTTGGTTTTGATGCCAATAACCTCTATCTCATT--------AAAAAAAAAAAAGCAAACAGCTTAAAAACATTCTCATGTATCTTTAAAGACAAAGCTTACTAATAACATAA a score=59150.000000 s hg15.chr12_random 466968 405 + 590431 TACT----------GTAAG-------------CGGAAATCACTAAGAAA---GAGAGGCTTTGGAAAACTCTTACCTGCTGAACTGACGGGGTAGGCATTGGAGTTGCAAGCCCTGCATCTCCACCATCAATATCAAAGAGGTCATTCGGACTAATTCCACTCTCACTCAAAGCAGCAAGCAGTAAATCTTGCCCTGGCTCCACCATCTTTAAAGGGAAATATTAAATATTAACATAAAAAACAAAAAGTGACAAATATTAACTCCCCTCTAAATATAAACAATCCAACAATCTCTATTAGACCCATTCATTCAGTATTAATGAAGAACCTGCCATGTCTCAGACAAAGAGGATAAAAGAGAAATAGTCTTGGATCCCAAG---CTCACTCTAAAATAGAAAGGATAGAGAAGTACATAAATCATAGCACAAGT s mm3.chr5 121773609 389 + 149719773 TACTAGTGTTACTAATAAATAACAATTGAAACTGCAAATTAAGAAGAAATTCTGGAAGGTTTGAAAAACTGTTACCTGTTGAACTGAAGGG---GGCGTAGGGGTGGCAAGGCCAGCATCTCCACCATCAACATCAAAGAGGTCATTCGGACTAATCCCACTCTCACTCAAGGCAGCAAGCAGTAAATCTTGCCCTGGTTCCACCATCTTAAGA-----------------------------AAAAAGTGAAAAATATTAACTCTTTTCTAAACACACACAATTAAACATTTTCTACCAGGGCTGTTCATTCAGTACTTATGAAGAACCTGCTACATTTGAGAAAAAGATA--AAaagagaa--agtctttgatcctggaaatgtcacattaaaat-gaaatgacacataagcaca--------attaagagt s rn2.chr12 14608153 383 - 46874691 TACTAGTTTTA---ATAAATAACAATAGATATTGCAAATTAAGAAGAAATTCTGGAAGATTGGACAAACTGTTACCTGTTGAACTGAAGGG---GGAGTAGGGGTGGCAAGTCCAGCATCTCCACCATCAACATCAAAGAGGTCATTCGGACTAATCCCACTCTCGCTCAAGGCCGCAAGTAGTAAATCTTGCCCTGGTTCCACCATCTTTAGG-----------------------------AAAAAATGAAAAATATTAACTCTCTTCTGA----ACACAATCAAACCTTTTCCACCAGAGCTGTTCATTCAGTACTTATGAGGCTCCTGCTACATGTGAGAAAAAAAGA-TAAAAGAGGA--AGTCTTTGATCCCGGAGCCCTCACAATAAAAT-GAAAGGACATAGAAACACA--------ATTAAGAGT a score=9305.000000 s hg15.chr12_random 467382 168 + 590431 CAAAAGGCTACGGGAACAGAGAAGGAAATAATGAACTTTGTGGAAGCAGAGATGTTATAAAGATGACAATGCAG----CAGAGCATCAGGGAATCATCAGGTGGACAAGGATCCTCTCGACTATGCATTCAAAACATAGAGGTATGAAAGAATTTGAC-ACACTTTAAAAACT s mm3.chr5 121774133 141 + 149719773 AAACACACTATGAGCTCCAAGGAGGCAAGAGTGAACTGTGCACAGCT-----TCCTAGGTAGATGACAACACCCAGTTCAGAG---GAAGAAATAACCAGAAAGACAAGTGTCTTCTAAATACTACATTCCAA---------------------CGGC-CCAC--CAAGGACC s rn2.chr12 14608813 142 - 46874691 aaacacactacaagctcgaaagaggcaaaaGTGAAGTGTGCACATCT-----TCCTAGGTTGATGACAGCACTGAGTTCAGGG---GAAGAAATAACCAGAATGACAAGTATCTTCTAAACACTACCTTCCAG---------------------TGAAGTCAC--CGGGAGCC a score=3283.000000 s hg15.chr12_random 467885 188 + 590431 --------CAAGGGTATGGAAGCTCAGAACAGAAGTATGGGGCTCAGGCAGGAAACGGCAAGAGGTGAAGGTATCACCTACAGCCCTGTACACCATGCTGGAGAGTTCACTTGCTCTTGTGGGAAACAGGGATTACTAACAAGTTTTCCGATTGAGGACTACCTGACACGGCAGATTTGTGATTTAGAAAGATTAC s mm3.chr5 121774274 129 + 149719773 --------CACGGGT--------------------------------------------------------TATGATCTATGGCCTCATCCATGCTTCTACAGTGATAAAGGAGTCTACAGTGATACAGG--CCACTACAGGATTTTCAGATACAGGACAGCTTGGCACATTAG-TTTCTGATTTAGAAAGATTAC s rn2.chr12 14608955 109 - 46874691 CATCCATGAGCAGGT--------------------------------------------------------TATGGTCTATGACCTCATGCATCCT------------------TCTACAGTGATACGGG--CCACTA---------CAGACACAGGACAGCTTGCCAATTAAG-TTTCTGATTGAG-AAGAGTAC a score=5824.000000 s hg15.chr12_random 468370 128 + 590431 CAACAGCAATGTGGAAACAAACTAAGAG--GGAGCAGAAGACC-----------AGGAGCAGAATGACATCTTGGGAAACTGACATAGCTGACCAGGAGAGAGATGTATTATAACTGCATGGGGCAGAGAGAAAGAAGGGG s mm3.chr5 121774403 95 + 149719773 TGACACCAGTACAAAAGCAAACTGAGAGGAGCTGGAGTAGAGC-----------AGACACAGGAAGACTTCCTCTGTAACAGGC-------GTTAGAAGTG-------------CTGC---------------AGTGGTGg s rn2.chr12 14609064 108 - 46874691 TGACACCAGCACAAAAGCAAACAGAGAG--GCTGGAGCAGAGCCTCTCCACAGTGGACACAGGAAGACGTCCACTGCAACAGGT---GTTAGTTAGAAGTG-------------CTGC---------------AGTGGTGg a score=701.000000 s hg15.chr12_random 468732 26 + 590431 TTTTAGTTTGGAAGTTTTTCCAACTA s mm3.chr5 121774956 26 + 149719773 TTTAATTTTAGGAATTTTAAACATCg s rn2.chr12 14609605 22 - 46874691 GTTAATTTTAAGAATTTTAGgg---- a score=8668.000000 s hg15.chr12_random 468801 237 + 590431 GAAAAAGAGCTTTCTAAATTTTAACTTTTCTCATT--AATTTCCCTGAAATAACCAATTTACATATACAAACATACTTATGAAAAATCTGTACTCTTCTCAGAAAACTAATTTCATGTTACATAAATA---TACTAATTTTCAGCTAGTCCATTTGTTCTCAGACTGTG--ATAAAATTAAGTGTCAGTGTTTCATGATGTCCTACAAAAATGGCATTAGCCAAGAGTACGATCAGCATGACTa s mm3.chr5 121775327 154 + 149719773 AAAAAAT--------AATTTTTAACATCTCCAATTTAAATTTTTCTAAA---------TTTCATGT----ACATTATTATGAGTAGTTTTT-----CCCAAGGAAAAAAATGT-GTGCTATATAAACAACATAC------------------------CTCAG-CTGTG--ATGCAATGATGCATC-------CATGACATTCTACA---------------AAGAG--------------CCA s rn2.chr12 14609835 166 - 46874691 aaaaaag--------aaTTTTAAACATCTCCAATTTAAAATTTTCTAAG---------TTACATGT----ACATTACTGTGAGCAGTTTTT----TCCCCTGGAAACAAATAT-GCGCTACATAAACGA--TAC------------------------CTCAG-CTGTGTGATGCAATGATGCATC-------CATGACACTCCACAGA----GGGCTAGCAAAGAG--------------CCA a score=11970.000000 s hg15.chr12_random 469298 217 + 590431 TGAGCATGACTTCTAGCATGTAAGAACTGTTTCAGATGAAAGCATTTAACAAAGAAATCCTCTACTGCGTCTATGTCACCTACGTTTGTGTATCATTTAGACAGATGTTCTAATGGAAACATGAGTGAGTCTAAGGTGAAAACCAGATACCCAGAATGAAA--GAGGGCAGACCACTGTGTAGAAGAGTG-GGAGGAAAAACAGACACCCCAAAGGAGAt s mm3.chr5 121775481 171 + 149719773 CAGACACAAC--CTCGTATACAGAAA----CACA----------------AGAGAAATCCTCTGCTCTACCTAAGTTGCATCTCTCTGTGCACCACTTAG-CAGAAGTTCTAACACACACA------AATGTCAGGTA-------GATATCCTGACTGGAACTGAAGGCAGA--ACCAGGTAGAAAAGGATGGAGGACGATCA---ACC--------GGT s rn2.chr12 14610001 158 - 46874691 CAGCCACAAT--CTAACATACAGAA-----CTCA----------------AGAGAAATTCTCTGCTCTGCCCAGGTCCCATCTACCTGTGTATCACTTAGACACAAGTTCTAACAAATGCA------AATATCAGGTG-------GATATCCTGACTGAAGCTGAAGGCAGA--ACCAGGTAGAAAGGAA----------------ACC--------AGT a score=19143.000000 s hg15.chr12_random 469803 393 + 590431 TCCCAAAGGAGATTTCTCCATAATTTTCCAGAAAAAGGAAAAGCAAC-----CTGAGGAAGAAAACCATTTTGGGCAGGGAGTGAGGAAGG--AAGGAA-ACAAgcctag---------caccgtgttaa----attcttcataaacattaccatactcaagcccaaaacaaccctgagtgagataggt---------------aatataatttaagagctgaaactgagggtcagaaaacttaaatcatctaccgaagttcactcacgcaggaagtggtagaagattagaaactag-atagttcaaactcccaaaatccacgaagttttctttccaatgAGTAGATA-AAGTTGATGTTGGTAAACTACGATGTTTCATTATTTTATTTCAAAATAAACGCCAG--ATTGAGATTAAAATTGGAGGGGGAAT s mm3.chr5 121775652 360 + 149719773 TTTCTATGAAAA-------------TTCCAGAGAGGGAAAAAAAATAGAAGTCTGAGACAGAAAACCATCTTGGTCAGAAAGGAGGAAAGGTTAACTAAAGTCAGTGTAGGTAATGCCCCAACCTGTCAGAGACAGGCTTTTCACACACCACAGCACCTCATCTCACAGCAATCT---GTGCAGCAGGC---------------AGTGCACCCTCAAAGTTAGA----------------------------GCTCAAGTTTACATAGACA--AAGTGATCCAAGATTAGACTCCAGAACAGCACAAATTCCCAAAGCTCACG-GGTTTCCTTTCCAGCTAAGAGATAGAAATTGA-----------CACCAAATTTTAATGTTCTGCCTCGGAATAAATGTTAGACACTCAGACTAAAGTGGAAAGAAGGAT s rn2.chr12 14610159 319 - 46874691 TTTCTATGAAAA-------------TTCCAGAGA----AAAAAACCA-----TCCAAACAGAAAACCATCTTGGGCAGAAAGGAGGAAAGGTTAAGTAA-GTCAGTGTGGGTAATGCCTCAACATGCTGGAGGCAGACTTTTTACACACCACA-CACTTCACCTCACAACAATCC---ATGTAGCAGGTTATACATCCAGGAGTACTACACCCTC--------------------------------------CTATAGTTTATATAGACA--AAGTGATCCAAG--------------------------------CTCACT-GGTGTCCTTTCCAGCTAGGAAATAGAAAATGA-----------CATCAAATTTTAATGTTCTGCCTTGGAATAAATGCTAGACACTTAGACTAAAATGGAAAGAAT--- a score=699.000000 s hg15.chr12_random 470773 24 + 590431 AAATGTTTTCCTAACAATGAGCAT s mm3.chr5 121776625 24 + 149719773 AAATGATTTCTTAAAATTAACACT a score=13487.000000 s hg15.chr12_random 470797 160 + 590431 TTAAGTACAAAAAAATTTTACTGAGAAACTTTTTGATGTTCATGTAA-----GA----AAGAGAGCAACGGTTATAAATAACATTATCGGTGACCAGCTTAGAACTCACTCATAGGAATCACaatttgacttagccattccacaatgtatacttgtatataccaaaaca s mm3.chr5 121776649 157 + 149719773 AAAAGTACAAAAATATGGAAGGGAAGAATGTTTTGATATCCATACAATATACAATGCCCAGAGAGC------CATAAAGCACTCCATCAGCATACATCTCAACCTGCACTT-CGGAAGTAAAGGTTC--TTTAGCCATTCCAAAGGTTCTGCGTGTAT---CAAAAACA s rn2.chr12 14611127 149 - 46874691 AAAAGTATAAAAATGTGGAAGGGAAGAATGTTTTGATATTCATACAA-----GATGTCCAGAGAGC------CCTAA-GCACTCCATTAGCATGCATCTCAAACTGCACTT-CAGAGATAAAGGTTC--TTTGGCCATTCCAAAGGTTCT--GTGTAT---CAAAAACA a score=24874.000000 s hg15.chr12_random 471107 241 + 590431 ATATATCTTATACATAAATGGAATAC-----TAGGGATCATTTCTCAGCCAAACGGGCACAAA-TTCTCTATTTGTTCTTTTTTTGCAGGGTGAAGGAGGGAAAGGGGATAGAGAGAGAACATCTATCCCATTCTCTAACTCCATTAGGCAAAACCCTTAGTATGTAATTATATTTCTATTCAGAAACTattatagactcacagaattttggtgctcaaactgaaagagcccttaaaaacttgtatt s mm3.chr5 121777534 218 + 149719773 ATGTATCTTTCTCAT--ATGGAGGACC----TATGGAGC--TTTCCAGGCAGTGGGGCACACATTTTTCTAGTCATTC-TCTTCTTCAGGAAGCAAAAGAACAAG---------ACAGAGCACTTACTGCATTTTCTAACCACTTTAAGC--AACTCATAGTATTTAATCACATTCCCGTATGAA-------ACAGAATCACAGGACTTCAGTGCT-AAATGAAGAAAGCTCTTAAAAT-TTGCACT s rn2.chr12 14611615 221 - 46874691 ATGTGTCTTTCTCAT--ATGCAAGATCAGTCTATGGAGC--TTTCCAGGCAGTGGGGCACACATTTTTCTAGTCGTCC-TCTTCTGCAAGAAGTAAGAGAACAGG----------CAGAGCACTTATTGCATTTTCTAATTGCATTAAGC--AACTCTTAGTATTTAATCATAGTCTCATATGAG-------ACAGACTCACAGAACTTCAGTGCT-AAATGGAGAAAGCCCTTAAGAG-TTGCCCT a score=16923.000000 s hg15.chr12_random 471354 229 + 590431 tctc--------ctcctcattttacaaataagACCTGTTCATAGGAGGAAAAACATTTTCACTTTTAAGTCACAAAGCACCATATAAATGCTAAATACTGTTAGGTAC-AAGAGAACTGTGTTAGTGTGTCTACAAAGGAATTCA----TAGACCTCAGATGACATTTACCATGGAGCAGTCTGACAAACCCAAGTTACTAACCACGGAAGGTCTCTCTCTCAAAC---AATGGACAAAAAAAGA s mm3.chr5 121777938 195 + 149719773 GCACTGGCCAAGCTCTTGGTTTTATAAAAGCTGCTTAATCTCAAGGGGGAGAATATTT-------------------CACAGTATAAATCCA-----------------TAGGGAAC--TGACACTGTGCCTACCAAGGAGTTTACACCTAAATTCAAAGGGACATCTGTCATGCAGCAATCTTACAAGTCCAA----TAACCCACAGAA-------TTGTCAATTGCAAATGAACATTAAAAa- s rn2.chr12 14611831 214 - 46874691 GCCCTGGCTAAGCTCCTGGTTTCATAAAAGCTGTTTAATCTCAAGGGGGAAAACATTT-------------------TACAGTATAAACTCAAAACACAGTT--GCACGTAGGAAAC--TGACACTGTGTCTGCCAAGGAGTTTACACCTCAACTCAAGGGGACCTCTGTCATGAAGCAATCTAACAAGCCCAACAATTAACCCACAGAA-------CTGTCAACTGCAAATGTACATCAAAAA- a score=3622.000000 s hg15.chr12_random 471583 30 + 590431 GTTCAATTTTTATCATAAATACATTTGAAa s mm3.chr5 121778183 29 + 149719773 GTTCTAC-TTTAAGAAAAGTACATTTTAAA s rn2.chr12 14612100 30 - 46874691 GTTCCACTTTTACCAAAATCGCATTTTAAA a score=18277.000000 s hg15.chr12_random 472510 492 + 590431 GCATTTGAAAACATGACCTATTTCAAAACAGTACGCCTATGAAAACTTCTATGATAAGTAAGACACAAAGACACAGCAGTAGAGAAAAACTAAGAGCTAGTTTTGGCAGGAAGAGAATACTGAGAAACAATAGCCAACCAGAAGAATGGAAGGATATAGTTCCCATTCAGAATACCAACACAGAAAGTTACCAAGGGGGACAAGGTTCCTCTTGCTGAGACCTAAAACCAATCTCTACAGCTCTGAGCAGAC----ACCAGGGACATGTCCACAATAGCAGTagcacaccacagtggctgaggagatcatggagtcgga--caaaatacctaggttcaaatactggctgcattgcccactagtag---tatgatatggtcaagtgagaacttctctgactcagtttcctcatcttaa-aataatacaaatagaacttccttcataggattactgtgtgaagtaaatgtga------------------------------------------tactacctgGAGTAAATGTTAGCTACTAGCTA s mm3.chr5 121778212 414 + 149719773 GCATTCATAAAA------TATATAAGCAGGGTTCGT------------------------------------------GTGTGTAGAAGTTATGTGCT-GCTTTGGCAGG----GAATCCTGAGAAGCAAT-GTCACTCAAAAGAGCAGAAGG-TACAGCACCCA--CTAAATACCAACACTGACCCTTATCAGCATGGACAAGA---------CAGAGACCTAGAAC---TCTTCAGAGCTCTGAGCAGATACAAACAAGGATGTTATCTGTGAGATGAG-GGCACAGGGAAGCAGCTGAGGC-ACTACAGAAGCAGA---AACAGAACAA-----AAATACTGTTCACA----CCACCAGTGTGTATGTAACACAGCCAAGTAAAA----AGCCAAGACTGTTTCTTCATCGGCATGACAGTATTA--AGAACTTC-----TAAGACTCTTGTGTTCAATATGAGAGCTAGAGA------------------------------------GAATACCTAGAGTGAATGTCTGCAGCTGGTTT s rn2.chr12 14612130 398 - 46874691 GCATTCATAGAGAGG--CTAACTGAGGAGG------------------------------------------------GTGTGTAGAAGTCATGTACT-ACTTTGGCAGG----AAATCCTGAAAAGCAAT-GTCACCCAAAAGAGCAGGAGG---------------TAAATAACAACACTGATCCTTATCAGCATGGACAAGA------CAGCAGAGACCTAGAGC---TCTTCA---------------------------------TGTGAGACGAG-GGTA---GGAAGCAGCTGAGGC-ACTGCAGAGTCAGAAACAACAGAACAA-----AAGAACTGCGCACAT---CCCCTAGTGC---TGTA--ACAGCCAAGTAAAA----CACCAAGGTTGTTTCTTCATCTGCA-GACAGTCTT-----AACTTC-----TAAGACTCTTGTGTTCAATgagagagagagagagagagagagagagagagagagagagagagagaAAATGAATACCTAGAGTGAATGTTTGCAGCCAATTT a score=11988.000000 s hg15.chr12_random 473025 118 + 590431 TAGTATTTCATCCA------------AAAAAGATGTTTACTCCCATATCACTGATTCAGCACTTTATTCCCCAGAATACAAACTTT----GTTAGCAATCCATTAAATAATTAACTTTCATACTAGTCTTTGGG s mm3.chr5 121779164 132 + 149719773 TATTATTTTGACAAACCTGAGAATACAGAAAGATCTTT-CTTTTGTATAACTGCCACACCATTGGACTGCC-AGAATACAAACTTTTAGTGACAGCAATCGATCCAATAATTCATTTTTAAATAGTTCTCTAAg s rn2.chr12 14612882 123 - 46874691 -------ctgaCAAACCTGAAAATACAAAATGATCT---CTTTTATATAAATGCCACACCATTGGACTCCCCAGAATACCAACTTT-AATGACAGCAATCTATCTAATAATTCATTTTTAAATAGTTCTACAAG a score=8206.000000 s hg15.chr12_random 473448 165 + 590431 --CATATCAA-----TTATAT---------------AAAATACT-----------------AGTCC-------------------------------------------------CTTTTTATCTTAAAGTGTT-----ACTGCTACACATCCAACTTGACCAATCAGTTACTAAATTTAGAATAAACTGGTGGACATTTTTAAATGTGCACGGATACTATCAC-TTAGCAAATATCTTCACCTTAGCTAATAACAAAA s mm3.chr5 121779658 228 + 149719773 tatatataaataaatttatatatttatatattttaaaaattaattCTGGGGTGGAGG----AGTAAATGGGATGTAAAAGAATCAGTAAAAAAA---------------------AGTTCTA---TAAAATACTAGTAAAGTGTCTCAAATCTAAGTTGTGCAGAAA---ATCAGATGTAAAGGCAACTGGCAGTCATTTCCAAATGTACATAGATACTATCATATATTCAAGTATTTTTGCATGAATGGGAAAAAAAA s rn2.chr12 14613213 228 - 46874691 ---acaataaaAAATTTATATATCTA----------AAATTAATG--GGGGTGGGAGGGACAGTGAACAGGATGTAAGTGAATGAGttaaataattaaacttaaaaatttaaaataGTTCTA---TAAAATACAAGTAAAGTGTCTCAAAT------TGTTCAGACA---ACCAGATGTGAAGGCAACTGGCAATCATTTCCAAATGTGCACAGATACTAC----TTAGCAAGTACTTTTGCCTGAATGAAAAACAAAA a score=4636.000000 s hg15.chr12_random 473666 55 + 590431 ATCT--GTGCTTTTATGCAG-CTGTGATATGACTGACATTTAGTTTAAGAATTTTAAG s mm3.chr5 121780370 52 + 149719773 AAAA--CAACATCAGAACAGACTG----AAGACTGACATTCAGTTTAAGAATTTGAAG s rn2.chr12 14614273 54 - 46874691 aaaaTTCACCATCAGAACAGACTA----AAGACGGACATTCAGTTTGAGGATTTGAAG a score=7054.000000 s hg15.chr12_random 475064 99 + 590431 TTTTTCTTTTAACCTTCAAGATAACCCATGAGTATCAAATGCTACCCATTATCCCTTTGTCACAATTTATAAACCAAGGCTTAGAAAAATGAAATACGg s mm3.chr5 121781120 72 + 149719773 TTTTTCTTTCCATCCTCAGCACAACCCAAGAGTATC----------------CTCCTTATCACAAAGGAGGAGCT-AAGCCTAGA----------GAGG s rn2.chr12 14614956 69 - 46874691 TTTTTCTTT---TCCTCAGCATAACCCAAGAGTATC----------------CTCCTTATCACAGAGAAGGAGCTAAAGCCTAGA-----------CTG a score=7561.000000 s hg15.chr12_random 475463 90 + 590431 AAATGAAATACAACAAAGGGAGCTTGGAATAGAATTACAAATTCAGAAGGTCTGACACCACATCACTCCAAGATCCTGTACTCCCAACCC s mm3.chr5 121781192 77 + 149719773 ---AAGAATGTAACAAGGTA----------ACAACTGCATAATCTTGGCGCCCAACACCACACTTTCCCACAATCCTGCCCTTCTAGCCC s rn2.chr12 14615025 77 - 46874691 ---AAGAATGCAACAAGCTA----------ACAGCTACACAAGCTTGGAGCCCAGTACCACACGTTCCCACAATCCTGCCCTTCTCACCC a score=12339.000000 s hg15.chr12_random 476951 188 + 590431 ATCTTTACACCAAC------TTTAGAAAGGCAAAGCATGGGAACCCACAGAGCCTCATGGAATGTGAGGTTACTCAGTAGGACTAGCCCTGAGTGTTCTCCATCTTCACAGGTGGCAAGTCACAAATCGAAGCTCAATTTAGATGCTAAGAAATGCCTAA-ACATATCTGT----AGCTAAAC--TCTGAGG----------GAAACCACt s mm3.chr5 121782431 183 + 149719773 ATCTTTAGACAAAC------TTTAAGCAAG-AAAGCTCAGG-GCCTCCTGTACCTCATGAA-----AGAATATTTGGATAGGACAGATCTGTGTA---CTGCCCTTGACAGGTGGCAAGACTCAA----------AAGTTGAACTATGAAAAGCACCAAGAACACACCTACACAAAACTGAGTTGTTTGAAG--TATCTTTCTAAAGCACA s rn2.chr12 14616145 200 - 46874691 -TCTTTAGAGAAACTTTAATTTTAAGCAAG-AAAGCTTAGG-ACCTACTGTACCTCATGAC-----AG-ATCTTTGGAAAGAACAGACCTGTGTATTCTTGCCCTTGGCAGGTGGCAAGACTCAACTCAAAGTTCAACTTAAACTATGAAAAGCACCAAACCCACATCTACAC--GATGGAGCTGTTTGAAGCACATCTTTCTAAAGTAAA a score=5906.000000 s hg15.chr12_random 477468 50 + 590431 TGCTGCCCCTTTTTCAACAGTATTTTCAGTAAGGCACTTAAAACCTACAg s mm3.chr5 121782941 47 + 149719773 CATTGGCCATTTTTAAGTAGTAACTTC---AAAAAACTTAAGACATACTA s rn2.chr12 14616505 47 - 46874691 CACTGGCCATTTTTAAGTAGTAACTTC---AAAGATCTAAAGACATACAA a score=7364.000000 s hg15.chr12_random 478444 105 + 590431 GCCTGACATATAACCGCATTCAATGAATGAATGAATGAATAGTAGGCCACTAACTCAGTGTCTCCCCTTCAGCAACTAAAGTGAAGATTTATTTAAGATTCTGAg s mm3.chr5 121782991 87 + 149719773 GGCAAACATA-----ACATTCA-------AACAAATATATACAGGTT------CTCTTTTTCAACATTTATACAATTAAAATCAAGTTGGATATAAAATTCTGAA s rn2.chr12 14616555 85 - 46874691 TGCAAACATA-----ACATTCA-------AACAAATAAATACAAG--------CTCTTTTTCAATATTTAGACAATTAAGATGAAGTTGGATGTAAAATTGTGAA a score=2942.000000 s hg15.chr12_random 479781 65 + 590431 GCATAAATATTCCAAACGCAATTATATGGAATAAG--------TTGGAATGGAAGATAAAAAGCAGAAGCCAG s mm3.chr5 121783090 60 + 149719773 GCATGCATAAGCCA-------------GGAGAAAGAATTCTCCCCTGAGTAGAAAATGTCAGGGaaaaaaaaa s rn2.chr12 14616667 60 - 46874691 GCACACAGAAGCCA-------------GGAGAAAGACTTCTTCCTTGATCAGAAAATGTCTGGGAATAAAAAA a score=321.000000 s hg15.chr12_random 479846 53 + 590431 AGAAAAAAAGTAAAGTCGTCTCCCATCGGAAAAATTTTGGAAACAACTTCTTT s mm3.chr5 121783150 35 + 149719773 aaaaaaaaaaaaaaaCC--------TTAGAAAAATT---GAAA-------TTg a score=299628.000000 s hg15.chr12_random 479901 2246 + 590431 AAGATGAGAGAAAATGTTCCCTTGCTTGCAAAATTAATGTCCCACTCAAGTCACCAGTAGGAAATTCTGCTATC------------TTCTGTGCAACGATGATAGCTTTCCCTACGCTTATGAAA-----ATCAATTCTGATTGCTAGAAAATATGGTGGAAAATAGAATCCCTCTGTACTGTCAGCT---CGCAGAATTATCTGAAAGTGTTAAGTCAATTCCTGCTAGGGCACTCCGGA--TGACAGTTCTCTGCACCCTTCTGGATGACTCTTTAGAAACCATATTCCATCCCTAATTCTGGCTGTCTAGAATATATGAAACATTTAACTCAACATAAAATGATAATAGCCAACTTTCAAAGGTCAAAGGGGACCAGTTTATAACCTTCCCTCAACACGTGTTCAGTACAAACTTCCGGGTGCACTTACAATTGGCTGCGCAATTCAATGGAT--AAAAACGTTGCTTTATTTGTCTCTCATTTTCTGGCCCGTTC------TTTTCCCACGTTTCTCAACCAGCGACTCCCCAAAACAAAAGCCTCCCACAGTAAACCGAGCACGCACATAAAAAGAGC--------TTCTCTGTGCGAGGATCAAGTTAGTGGTCCGCAAACATTAACCAAACAGAAGCACAAAGCAGGGGTGGGAAGGGGAGGAGCTGGATGCCAGGGTCAGGAAAGAAACAATCA-GAAGGGTTTAGGAACATCCAAATCTCCTCAGCGGTTAAACCGACCCCAAACCACTTCTGGGAAACCACCGGTATCCACTGCTTTGGGGAACTCTGG-ATGCTCGTTATGCCAAACGCTCTCAAAGTAAGCAAATCCCCAACTGCCGTTCCCCTC--CATGGGTAATTCTTAGGGTCTGGGAGGTGAGCTCGCCCGC-CGAGGCAGAACTAAGCGAGTCGCCTGGAGAGGCGTGAAGG---GAGCC--TGCACGTGTCCCCCGCGGCTTCCCCACCGCCCCAAGAGCGGGGCATGTACGAGACCGCGCTGTGGGGTTCAGATTTAGGAAGGACGACCGCGTCGCCTGCC-TCCCTCCCT-CGCCCAGAGCCGGGAGCA--ATGCTGGGGCACGAAAGAGGACTTGGGAAGGATCCGGTCCTTACTTTCCCCGCGGGTCCCGGACCCGCAGCCCCCGGGTTGTGAGGCGGAAGCCAAAGGGGCGAACCCA--------GCGGAGCCGGCGTGCACAGACCCTGCCCCGCGGTCCAAGAGGGGTGC-CTCCGGCCCGGGACAGCGGGGCTCCCGGAGCCCGAAAGCCCCACGAGCGGCGACAGCGGGGCCCGGCGCTGACGAACAGAGGAAGCGAGTA-CAACGGCGCCGCCGTCGGGAACATgcccccgagggccccggagcgcgcggcggcggggggcggcAAGCGGCGAGGGAGGCCCCAAGCCGGGGCGAGGTGGCTGTCCCCCC------------AGCCTGGCCCCGCACGGCCCCCCGAGGAG----GGTG---GGAGTGGGAGGCTGTCCGGGAGGGGGAGTGTG-GAAGGAGAAAAGGGCCAAGGGAAGG-ACTTACTTTCCCCGCGGGACCCGGCGCCAGGACAGCTCCTCCCGGGAGGTGTGAGTTTGAAGGACCAGAGGCGACTGGAgcggaggcggcggtggcggcggc------------agcagcggcgTCCTGCTCTGCCTACCTCCCCGCCGCCATCTTGACGCCCCTCCCCCAgcccccccgccccgccgggaggggcgggggAGGGGCAACGGATGAGGCGCCGCGCGCACGCAGCGCCC--------TCACGTGActtcctccc----tcctcccccacccgcctctctgcgcccctctccgccccgcctccctcctAGGTGAAGGAAGATGATT-TCCCCCCCA----------TCTTGACCACCCCC----CAGTCTTCGCCGCCAAAAACGG-ACTCCGCCGGCTATCCTCGGCCCGGTACCAGTTGTTGGATCCAAGAGA-ATTCCGGAACCCAAACGGTCCATTACCGCGGCTCTGGGGTGGGCGAGGGGTGAGGGGGCCGGGTTTCCGCGAAGGGGGAGGGGG-AAGGCGAAGGCCACCTAGGAGAGTCACGTGACTACTGTTTCCGCAGGCGCT---CACGGAGAGCTCGCGGTAATTCCGTTTCCCCGCCCT--------------------------TTTTTCCCCGCGGCCTGTCGGGAAGAAGGTCCGCGTGCC---AGGGCTATCGGGAGGTCGGCCGGAGGGC-CGCGCGCATGCGCCCCGCGCCTGCTTTCAAACTCCGGCTAGGAAGGGCCTGGAGCTATTTTCAGAACCTGTTAGGGTGGGGAGCTACGG-CCCAGGAAGTTACCTAGCAGCGTTTC-TGTCACTTGGAA s mm3.chr5 121783370 2184 + 149719773 AAAGTAGAAATTAATATTTCTGTGCTATCAA-------------CTGAAGTCACCTCTGCAAA----TGCCATTTCATTCCAGAAATTCTGTGTAA--ATGATTCTTTCCCCAATGCTTATGAAATGAAAATCAACCCTGACTTCAGGGCATTAAGA----------------------CTGTTAATG---AGTAGAATTATATGCAAATGTTAGTAAGAT-----CTAGGGCATTCTGGATTTGACAGTTCCATGGACAGTCCAGGAAGATACTTTACAAGCCTTCTTCCACCATTAA--------ATCCGGAGAATATG-AATATTTTAATCAACATACACTACAAACA-------TTTAAAGGTCAAAGGGGACC-TTTTATAACCTTCCCCCAACACGTGTTCAGCACAAACTTCCGGGTACGGCTACAATTGGCTGCGCTATTCAATGGACTAAAAAACGATGCTTTCTTGGGCTCTCATTTTATCTCCAGCTCCCACGGACCCCGCACCATTCTCCAACAGCGACTCCCCCAAACAAAAGCCTCCCACAGTAAACAGAGCAAGCACGTAAAAAAAAAAAAAATGATGCTATATGGGGGCATCAAGTTAGTGGTCCGCAAACATTAACCAAACACAGGCACAAAGCCGGGATGAAAAGGGGAGGAGCTGGATGCCGGGGTCAGGAAAGCAACAATCAACACGGGTTCGGGCAAATCCGAGGCTTCAGAGACGAGGAGCCCATCCCACGCCACTCCTGGGAAAACACCAGCAGACACAGCTTTGAGGAACTTGGGGGTGCTCGCTCCAGCCAACACCGCTAAGGTGAGAAAGTGCCCAACCGCCATCGCCCTCTGCAAGGACTGAGCTCGGGCTCT-GAAGGTGCGTTCGCTCACTCCGGGGAACGCTAAGGCCACCAC--AGCGAAGCGTAAAAAGGTGTCCCGACCCACGTGTCCCACGCA----CCCCACCCGCCCGTGAGCGAGG------------------------------TCCAGGAAGGGCGTCCTGG-----TGCCATCCCCTCCCGCTCCGCGACCCGTGAGCACTGTGAGCCGGC--------GGAATCTAGCAGGGTGTCCGCCTCGGTTTCACCACCCGTCCCGGGTCCATGAA---------GAGAAGAGAGGGCGAGGAAGGCGATCCCCGATCTCCAGTGGAGTCGGCGGGAGCCGGCCTCG---------------GAGCCGCTCTCCGGCTCCGGACAGCGGGACTCC--------------------GTCAGGGCCGGCgctggctg--gctggctggctgAGAACGCCGGAACCAACGGGGCGGACAGCAGGAGGAAACA-----GAGCAGCGGGGCGAGCGA------------------GGCGCGGACGGCC----------ATAGAGTGGCCGCCTCCCCGCCACCCCCCACAGAC-GGCCCCACACGG-ACCCTGAGGAGCCGTGGTGTGGGGAGTGGGAGGCTGTCCGGGAGGATGAACGTGAGGGGAAGAAAAGGACCAAGAGAAGGGACTTACTTTCCCCGCCGGGGCCGACCCAAGGATAGCTTCTCCGGGTCCGCGAACGGGTGAGGAGCCGGAGGCGACAGGAgcggaggcggcggcggcggcggc------------agaagcggcgTCTGGCTCTGCCTACCTCCCCGCCGCCATCTTGAAGCCCCTCCCCCCGACCCCCCGCCCCGCAGGAAGA---GGGGGCGGGGCGACGGGTCAGGCGCCGCGCGCACGCAGCGCGCGACCCGAATCACGTGActcccccatcccacccacccccatcccttcccct---cccgtctccgccccgcctccttcctAGATGAAGGAAGCGGATTCCCCCCCCCACACCTCCCCATCTTGACCGCCCCCCTCTCTGCCTTCGGCACCCAAACCGGGACTCCGCCGTGTCCCGCTAGCCTGGTACCGGAGATGGGATCCAAGGGGGATGCCGGAACCCAAACGGTCCATTCCCGCGGCTCCGGGGTGGGCGAAGGGCGAGGGGGCCGGGTTTCCGAGAAGGGGGAGGGGGCAAGGCAAAGGCGGCCTAGGACAGTCACGTGTCCGCCACTTCCGCGGTCGCT---CGCCGAGACCTCGCGAGAATAACGTTTCTCCTccccaccccaccccacccccgccccaccGGTTGAGGTCCGCGGGCTGTCGGGAAGAAGGTCCGCTCCTCTTGGGTGCCACCGGGAGGTCAACCTGTGAACGTGCGCGCATGCGCCCCGCACCTGCCGTCCTAGTTGGCCTTAGAA-GGCCCAGAGCTATTTTCAGATTCT-TGGAAATGGGTAACAAGGACCCCGTCGAGT--CCTTGTGGGATTTCTTGTCACAGGACG s rn2.chr12 14616735 2128 - 46874691 AAAACAGAAATTAATGTTCCTATGCTATCGAAATTAATATCCGACTGAAGTCACCTCTGCAAA----TGACATTTCATCCCAGCA-TTCTACGTAA--ATGATTCTTTCCCCAATGCTTATGAAA-----ATCAACCCTGACTTTGGGGCATCAAGG----------------------CTATTAATGTGTAGTAGCACTGTATGCAAATGCTAATAAGAT-----CTAGAGCACTCTGGATTTGACAGTTCAATAAACCGTCCATGAAGATTCTTTACGAGCCGTATTCTACCCTTAATTCTTCAAGTCCGGAGAATATG-AATATTTTACTCAACATACACTGCAAACAATCGACGTTTAAAGGTCAAAGGGGACC-TTTTATAACCTTCCCCTAACACGTGTTCAGCACAAACTTCCGGGTGCGGCTACAATTGGCTGCGCTATTCAATGGAT--GAAAACGATGCTTTCTTGGGCTCTCATTTTATCTCCAGCTCCCTCC-ACCCCGCACAATTCTCAACCAGTGACTCCCCCAAACAAAAGCCTCCCACAGTAAACGGAGCAAACACATAAAAAGAGCT-------TTCTATATGGGTGCATCAAGTTAGTGGTCCGCAAACATTAACCAAACAGAGGCACAAAGCCGGGATGGAAAGGGGAGGAGCTGGATGCCGGGGTCAGGAAAGCAACAATCA-CACCGGTTCGGGCAAATCCAAGGCTTCAGAGCGATGGAGCCCATCCCACGCCACTCCCGGGAAAACACCAGCAGACACAGCTTTGAGGAACTTGAG--TGTTCCCTACAACCAACACCGCTAAGGTGAACAAATGCCCAACCGCCATCGCCCTCTGCACGGACTGAGCTCAGAGTCT-GAAGGTGCACTCACTCACTTCAGGGAACGCTAAGCCCACCAC--GGCGAGGCGTAAATA--TGTCCC--CCCACGTGTCCCACGCA----CCCCACCCGCCAGAGAACCAGG------------------------------TCCAGGAAGAGAGTCCCGG-----TGCC-TCCCTCCTTGCTCCTGGAACCGTGAGCA--ATGGGCCGGC--------GGAGTCTAACAGGGTGTCCGCCTCAGTTTCGCCACACGTTCCAGGTCGGAGA----------GAGGAGAGAAGGCAAGGAAGGCGATCCCCG-------GTGGAGTCCGCATGAGCCGGCCTCG---------------GAACTGCTATCCGGCTCGGGACAGCGGGACTCC--------------------GTCAGGGCCGGTGGTGTCTG--GCTG--------AAAATGCCGGAACCAGCGGGGCGGACAGCAGAATGAGACC-----AAGCAGCGGG-CGAGCGA------------------GGCGCGGACAGCA----------GTAAAGTGGCCGCCTCCCC--------CCACAGCC-GGCCCCACACGG-ACCCTGAGGAGCCGTGGTG---GGAGTGGGAGGCTGTCCGGGAGGATGAGCGTG-GAAGAAAAAAAGGGTTGAGGGAAGG-ACTTACTTTCCCCGCCGGACCCGACGAAAGAATAGCTTCTCCCGGTCCGTGAACGGGTGTGGAGCTGGAGGCGACAGGAgcggaggcggcggcggcggcggcggcggcggcggcagaagcggcgTCCGGCTCTGCCTACCTCCCCGCCGCCATCTTGATGCCCCTCCCCCCGACCCCCCGCCCCGCAGGAAGA---GGGGGCGGGGCGACGGGTCAGGCGCCGCGCGCACACAGCGCGCGACACGCACCACGTGACTTCCCCAT---ACCCCCCCACACACACTCCCAT---CCCATCACCGCCCCGCCTCCTTCCTAGGTGAAGGAAGCGGATCCCCCCCCCCA----------TCTTGACTGCCCCC---TCTGCTTTTGCCACCCAAACCGG-ACTCCGCCGAGTCCCGCTAGCCTGGTACCAGAGTTGGGATCCAAGGGA-ATTCCGGAACCCAAACGGTCCATTACCGCGGCTCTGGGGTGGGCGAAGGGTGAGGGGGCCGGGTTTCCGAGAAGGGGGAGGGGGCAAGGCGAAGGCGGCCTAGGACAGTCACGTGTCCGCTACTTCCGCCGCCGCTGCTAGCCGAGACCTCGCGAGAATAACGTTTC--------------------------CCCACCGGTTGTGTTCCGCGGCCCGTCGGGAAGAAGGTCCGCTTCACTTGGGTGCCACCAGGAGGTCAACCTGTGAACGTGCGCGCATGCGCCCCACACCTGCCGTCGTAGTCTGGCTTGGAA-GGCCCAAAGCTATTTTCAGATTCT-TGGAAATGGGTTGCTACGA-CCGGTCGAGT--CCTTGTGGGATTTC-TGTCACATGACG a score=44983.000000 s hg15.chr12_random 482181 415 + 590431 -------AATGTTTA-----------------CATATTCATTGCTTGTTAGGCTCGCTCAAA-------GCACTTTATTGGCAGTGAAACCGC------------AAGTAACCCGGAGCCCTCGGCGCGACCACGGCTAGAATCAGAGCCTAAGGCGTGTGAGCTCGGCCATCCCACGTCTGTCTTCACGCTCATCCGCAAGCCCG-ACACACCGGGGCTCCCACTTAATGAATACTGAAGAGTAGGGCTGTCCCTACCGCTTCTCACTTCCTTGTTTTCATCTTTTCGTTATTATTAAGCGACCTAACACAATAAACATATTACCTTGTTGGTAACCCTTTTGTAAAGTCATTCTGAAAGTGCTGTTTGACTCCGTTGCTTGGGTAATAAGCACGCCTGGGTGATTCTTGCC----CCCTACTGGCTGCGCATCCTACAAGCCTAGTGCTGAAAGCAAACCA s mm3.chr5 121785742 432 + 149719773 TATTGTGCATGTTTAAAAAATAATAAAAATAGCATAATCATTGCTTGTGTGGCTCGCCAGAGCTTTATTGAACTTTATTG---------CCTCCGTGAGCTCCTGAGGTGGTCCATGGTCATCATCTCAAGTA-------GATCAGAGCTGGAG------GATCTCAACTTTTA-----CTTTCTTTACACATGCCCAGACACCTGCACCCACCATTGGTCTCCATTAACTATCGCTGCATCCCACGGCTTCTTTTGCAGCATCTCGCTTGTTGATTTTTATGT----GTTATTATTAAAGGGTCTAGCAGACTAAACACATTAACTTCTTGGTCCCTCTTTTGTAAAGTCATTCTGAGAATGCAGTTGGACTCTGTTACTTAGGAAATAGACGCGCCTGGACAGGTCCTACTTACACCCTTCTGGCTGTACGTCTGGTTTGCCCTGGGCTGAAAGTAAGCCA s rn2.chr12 14618869 432 - 46874691 TATTGTGCTTGTTTAAAAGGGAAAATAACTTGCATAGTCATTGCTTTTGAGGCTGATTTGAGCTTTATTGAGTTTTATTGACTTGAAAACCTCCGTGAGCCTCTGGGGTACTCCATGGTCATTATCTCAAGAA-------GAATAGAGCTGGAG------GATCCCGACTCTTA-----TTTTCTTTACACAGGCCCAGACACCTGCACCCACCGTAGGTCTCCATTCGCGATTGCTGCAGACCAAGGCTTCTTTTGCAGCGTCTCTCTTGTTTATTTTCATGT----G---TTATTAAGAGGCCTAACAGACTAAACACACTAACTTCTTGGTCACTGTTTTGTAAAGTCATTCTGAGAATGCAGTTTGACTCCGTTACTTAGGAAATAGACGTGCCCGGACGATTCCTACT----CTCTTCTGACTGTGCATCTGTTTTGCCCTGTCCTGAAAGTAAAC-- a score=10131.000000 s hg15.chr12_random 499510 150 + 590431 tgctgggtgaccttgggcagcgcgtaagtgacccgcttcctctattgccccatctgtaaaatgggtggg-----tgtgaagcattaggatctttgcggtccTGGAAGGACCTTCCCTACTGACCCAGTTAGTTGGTAGGAGTTGTGTCTGTGGGt s mm3.chr5 121799661 140 + 149719773 TGTTGGGTGATAACTGGGAGAAAATACATTTCCTGGATAGTCTATTATCCTATCTGTAAAATCGGCAGGTAGTTTGGGCCGCATT------TCTGAGGTTCT-----GAGTTTACCCGTTGACCCATTTC----ATAGGAGTTGTACCCACAGAG s rn2.chr12 14630317 101 - 46874691 -------------------------------------TAGTCTACTATCCCATCTGTAAAATCAGCAGGCAGTTTGGGCCGCATT------TTTGAGGTT-------GAGTTTACCCATTGATCCAGTTC----ATAGGAGTTGTAACCACAGAG a score=3283.000000 s hg15.chr12_random 499966 28 + 590431 TTTGAATACTGGAATATTCAATAAACCt s mm3.chr5 121799801 24 + 149719773 TTTACATACTGGAAG----AACATACTT s rn2.chr12 14630418 24 - 46874691 TTTACATACTGGGAA----AACATACTT a score=204032.000000 s hg15.chr12_random 500305 1745 + 590431 -------AAAACCTTT-CAAACCTGAGAATGAATGGATCAAACTGCTGGA---------GAGGTCGGTGTGCTGGAGTTGCTAAACTGCTGGGAGACTCAGGTTTCCCAGCTCTTAAGG-GAAGATCGAGGGGTCAAAGGTC-GGGTTCCGGTCAAGCCCACAGAGAACCGGAAGTCCCAGATCCGGTCGGCTCGGAGCCCAGGGCTCCAGCCGGGCTACTCACGCTCCGGAGGCGGAGCTTC-AGCAGCGGGAGGGGGAGGAATCTGGGG------CCTCCCAATGGCAGC--TCGGGTGTCTTCCATCGCAGCCATTCAACGTCTGGCGACGGTCAAATTTAAACACCCCTCCCACCTCCTCCGCCGGGACCTGTCGGGAAAGCGTTTGCAGTTATTGCGGCGGCTGGACACGCCCCGCCGC---CGAAGAGGC-GGGAGAAGGGCGGGGCCTTTCTCCGAGTTGGCCTATCACTACGGGCAGCCTGCGGAGAGGCGGGAGGCGGCGCCAATCGGGGCGAGCAGCTGGAGCCCGGCGGAGCAGTTGGCTG-AGTTGTTGCAACTTTTTTCGAAAGCTGGGTTTCCCGGGAGATCCCAGGCGGTGACAGAGTGGAGCCATGGCTAGAGGTATTTGCCCAAGTGGCCGGCACCGGAG--CGGCTGGGTCGGGGGTCGTGCTGGAGGGGTTGCCGGGGTGGAGGCAGCGGCTGCGGGGAGGCGTCCTCCTCGGGTGGCTCGGGGCAAGCTTGGGGACCCGCGTGGGGGGAGAGGGGGTGCTGCTGCGGAACCCGCCGGCCCCCCCTTGCGGCTCCAGATGCCCCCAGAAACCCTTCCCACTGCCGTGCTTCTGTTT-CCCTTCTATG-AAGTGAACACCTGCGGGCCTGCC--TCTCCACGG---CAGCAGATCCATATGTCAGAGCTCTTTGGAAACTAAAGCGCAGGGCACCTCCAGGGAATAGGTGTTATTGATAGAAGTGGGGCGGGGGCAGGAGTGAGGCTTCGCCCACTTTGGGGCCCTCTCTCTTTGGGAAAGGAGGTGATCCCGAGGCGAAGGCGCAGATCGATAACCTGCATATTGGG--GTGCGCGTCAGGGTGGACACCGCAGCAGGCGCCTTTCCTCCCTCCCCACGTCCTGAGTCAGCTCTGCGCCGCTGGAGCGAAGGCCGGGCCCCGCTGGCCCACTTTGGGGT--AAAACGGGTTCCT--GGCATCTCGCGGGCGCGGTCGTTCGCCCCGCATCTGGTCAGGACTTCGCCCCCCGGTAGATGGCTTGGGTGGGCTTGTACAGCCCTGGGAGGCGATGCCCTGTCTGAAGTCCTCTGCATACTTAGTTGGCTGTCAGGACAGTGCCTCCCAGGTATGCGGCAAAGAGATCTCCAACCGCTTGGTCATTTCCAGCCACTGCGTCTCCTTCACGCCAAAGGGCCAAAAACTTGAGCGTGA----AAGTTGAGTAGAATTAGTATTAAAAAAAAAAAAAAGTTTTGGTATT-----------ATATTTTTCTCAAAATTTCAAGGCTTCAAGTGTTAGTAGGAATTTGCTTTAGTGCAGTATGCTCCCTATAGCAATAATAATGAATAAAATAATGATTCATTCAGTAAATATCTATTGGGTCCCTTTGTTTTCAGGCCCTGAAGTCAGTTGCATCATCTATTCTCCTAGCATCCCTAGAGGTTCTTTTGGGATAAGACTTACCCAGAGCCTGATGAAAAAATGAGGCATAGTAAACTTCAGGTTAAAGAGCTTCATCACTCAACTCTTGGAGAAAATTAATACTAATATTTTTCCT s mm3.chr5 121799825 1574 + 149719773 TTTGCAGTAAGCCTTT-GCAACGTAGGAGTT--CGAATGAAAATGCCAAACTCAGGGTGGACGTCAAGGTGATGGAGATGACAAACTTCTGAACGTGGTCGCTGCTCAAGAGCACAAGGGAAAGGTCGACAAGTCAAAGTTCTGGTTTCCGGTCAAACCTAAGGCAAACCGGAAGTTCCTGATGAGATCCACCTCTATACCGGGTCCTCCAACTGATTTTTGAGGAACCTGAGGTGGAGCTTC-TGC--CAGGGGAGGGCGGAGCTTTTGGTTCCTCCCTCCCAATCGCAGAAGATGAGTTTTT-CTATCTCAGCCAATCAATGTCAGGAGATGATCAAATTTAAA-GCGCCACCCCCCTCCTCCACCTGG-----------------CTGCAG--------------------GCCCTGCCTCCTGCAGAGAGGCGGGGAGAAGGGCGGACACTGGCCTCGAGCCCGCCAATCACAGCGAGCAGCCCGCGAAAGAGCGGGCGGCCGCGCCAATCAGCACCCGCAGCTGCGGTCTAGCTGAGCAGTTGGCTACAGTTGTTGCAACTTTTTTCGAAAGCTGGGTTTCCCGGGAGATTCCAGGCGGTGACAGAGCCCGGCCATGGCTAGAGGTATTTGTTAGGGTGGCCAGCGCAGGGGGACTGCCTAGCTGAGAGCCGCACTGCTGGGAACGCAAGG--TGCGGGAGCGGCCGCTCACAGGCATCCTCCTATGGTGG---------AGCATGGGGATCC----GGAGGGACAGGG----------------------------------GACTCTGGGTGCTACCGGAGTACATTCCCCTTGTTGACCAGCGCTTG-ACTGTCTGGACGCGTGGGCGCCTGTGGTTCAGCCAGTCTTCCCGGAGCTGGCATATCCGTATGTCAAAGCTC-ATGGAAACTTGAGCGCAGCGCCCCTCCAGGGAACGGTTGTTACTGAT--------------GCCGCGAGCCTGACTGC--------TGGA-------------------GGGGGTGACCCCGAGGC-AGGACGCAGATTGCTGACCCCCATCTTGGCCAGTGCGCGCC------------------------------------------CCTGAGTCTGCTCTGTACCATGGGGTC--AGGCCGGGTCCCAGTGGTCCTTTTCGGGGT--GAATCGGGTCCCCCAGGTGCCTGGCGTA-GCAGCCCTTCGCCCCTAAGATGAGCAGGACTTCAGCCTACTGGAGATGGCGTGGGTGGACTTGTGCTGCTGCGCAAGGCAAATCCATCTTTGAAG----------GTATAATATGTTGTCAGGATAAAAA-CCCCCGTTATGCGGCAAAGGGATCTTCACCCGC-TGGCCATTTCTAGCCGCTGTGTC----ACACTCGAAAGGACCAAAAATTTGAGGGTGACTAGAGGTTCAGTTTTGTTTGTTT---------------GTTTTTGTTTT--TAACGTGGAGTA-TTTTCTCCCAGTACCAAGACCTCACGTATTAGTGGAAAATTACCTTAATGCAGTCAGCTCTGTAGAACAACAATCACAGATTAATTTGtcattcattcaaggaatatttattgggcccgtttg----catgttctacaccctatTGCCTTATTTATTCTGCCAGCATTCCTACAGGGTCTTTGGAGACAAGA---CTTCAGATAGTAAC-CAGAAATGAGACTTAATGAACTTCACGTTAAAGTGTTTAATTACCCA-------GAGAAAATTAACATTAGTCTCACCCCT s rn2.chr12 14630442 1574 - 46874691 TTTGCAGTAAGCCTTTTGCAACGTAGGAATT--CGAATGACACTGCCAAAGTAAGAGTGGACGTCAAGGTGATAGAGATGACAAACTTCTGAACGTGACCGGTGCTCAAGAGCATAAGG-AAAGGTCGACAAGTCAAAGGTCTGATTTCCGGTCAAACCTAAGGGAAACCGGAAGTTCCTGGTTAGGTTCACCTCTATACCGGGTCCTCCAACTGACTATTGAAGAACCTGAGGTGGAGCTTCATGC----AGGGAGGGCGGAGCTTACGGTTCCTCCCTCCCAATAGCAGAAGATGATTTTTTTCTATCTCAGCCAATCAGTGTCAGGAGATGATCAAATTTAAA-GT------CACCCCCTCCACCTGG-----------------CTGCAG--------------------GCCCAGCCTCCTGCAGAGAGGCGGGGAGAAGGGCGGGCCCTGGCCTCGTGCCCGCCAATCACAGCGGGCAGCTCGCGAAAGAGCGGGCGACGGCGCCAATCAGCATCCGCAGCCGCGGTCTAGCTGAGCAGTTGGCTACAGTTGTTGCAACTTTTTTCGAAAGCTGGGTTTCCCGGGAGATTCCAGACGGTGACAGAGCGGGGCCATGGCTAGAGGTATTTGTTAGGGTGGCCAGCGCAGGGGGACTGCCTAGGAGAGAGCCGCACTGCTGAGAATGCAAGG--TGCGGGAGCGGACGCTCACAGGCATCCTCCTACGGTGG---------AGTGCGGGGACCC----AGAGGGACTTGG----------------------------------GACTCTAGCTGCTTCCGCAGGCGGTTACCCTTGTTGGGCAGCGCTTTCCCCGTCTGGACGCGTGGGCGCCTGTGGTTCAGCCAGTCTTCCCGGAGCTGGTATATCCGTATGTCAAAGCTC-ATGGAAACTTGAGCGCAGCGCCCCTCCAGGGAACGTTGGTTACTGAT--------------GCCAGGAGCCTGGCTGC--------TGGAG------------------GGGGGTAACCCCGAGGC-AGGGCGCAGATTGCTGACATGCATCTCCAGCAGTGCGCGCC------------------------------------------CCTGAGTCAGCTCTGTACCGTGGCGTC--AGGCCAGGTCCC--TGGTCCTTTTCGGGGTGAGAATCGGGTCCCCCAGGTGCCTGGTGGA-GCAGCCCTTCACCCCTAAACCGGGCAGGACTTCAGCCTACTGGAGATGGCATGGGTGGATTCGTGCGGCCGCGCAAGGCAAATCCATCTTTGAAG----------ACATAATTTGCTGTCAGGACAAAAGTCCCCCGTTATGCGGCAAAGGGATCTTCACCTGC-TGGCCATTTCTAGCCGCAGTGGC----ACATGCAAAAGGACCTAAAACTTGAGGGTGACTGGAGAGTCAGTTTTGTTTGTTT---------------GTTTTTGTTTTTATAACGTGGAATA-TTTTCTCGAAACACCAAGACCTCACGTCTTAGTGGAAAAGTACCTTAGTGCAGACTGCTCTGTAGAGTAACAAT--CAGATTAATTCGTCATTCATTCAGAGAATATTTATTGGGCCCATTGG----CATGCTCTGCACCCTATTGCAGTATTTATTCTCCCAGCATTCCCACAGGGTCTTTAGAGACAAGACTTCTTCAGATACTAAC-CAGAAATGAGGTATAATGAACTTCACGTTAAAGTGTTTCATTACCTA-------AAGAATATTAACATTAGTTTCACTCTT a score=8350.000000 s hg15.chr12_random 502624 47 + 590431 ACAAATTGTTATTCTCA-----TTTTTTGGAAGAGGAAGCGTGAAGTCCAAA s mm3.chr1 160164582 47 + 195869683 ACAGATTATTGTTCTCA-----TTTTTCAGAAGAGGAAGCATGAACTCAAAA s rn2.chr13 61834759 52 + 105800825 GCAGATTCTTGTTCTCATTTTTTTTTTCAGAAGAGGAAGCATGGACTCGAGG a score=83494.000000 s hg15.chr12_random 504450 769 + 590431 AAACAGCCATTTGCTTATCTGTGGATgttggaaggtgctctggtg-gattatggaattcaaggttcttggtttttacccatgaggacac-tgaggcccagactggggaagtgacttggcgatggtcacaaaacacctctgggcagatgcagggaaataagtccagcccctgactcccaggccatgGGCCAGGCTGCAGGAGCTGGATGCCTTGAAGTGTCTTGTTTGCATCTATGACTTTGCACAAATACAGTGAATCTGGCTGTGGGCCCTCAAGCCTTA--ATGGCCACAGAGTAGTGGTGCAGGGCAGTGAGCTATGCTGAAACAGCCACCAGAGTGACGGGAACCTCGTCTGCCTATGGGGGCA-TTTTCTCACGGC-GGG----ATAGGAGAACAAGGTG--------ACATGTTAAACCCTTCTGCAAGACCATTTGCTTCTCCCAAACTCCATTTCCTCATCTGT---AACCAGGAAGGGTAGTGG-CTGGGAGGGCAAGGCCCTGGGGTCAGTTGGCTGGGGCTGAAAACCCATctagttctgagaactt-------------ggccaagctc---------------ctcactttctccatctgttgaaaagagataataatggtgtctacctttgcagggctgctgtgaggtttcagtgagataac--gGCAAG---AGACTCGCCCAGGAAACCGATCATTATAACCCCTGGCT--CTGTCTCCCCAGGGCTTCCTA----CCGGT--CAAGTACAGCCCTTctgggtttgacacctggccccatcacttcctagttctgtggcccgggacaaacccctgc s mm3.chr5 121804954 713 + 149719773 AAACAGCCCTTTA-----TTGTAGAGGTTGGGAGGTCCCTTGGGA-GGTCATGGAAAACAAGGCTTTGGAATTTTAGCTACTAAGATATTAGAGGGCCAGACTCGGGAAGTGACTTAGTTGCG----------------------------------------------TGGTCCTAATGCTAAG---------GCAGGAGCTGGGTACTTTCTGATGTCC--TTCGCGTCTATGACTTTGCACAAATA---CAA----GTCTTTGG--CCGCATGCCCTA--ACAGCCACCGCACAACTGCACAAGGCAGTAAG-----------CAGTCACCAGAGTGCCTGGAATCCTGCCTACCTA----GGCATTTTTCTTAAAGGTGAAGGCCACAGGAGCACAAGGTGGGTGACCTGCTTGCAAAACCCTTGTGCCCCACTG-TAGCTCCTCCCAACCTCAATGTCTTCATCAGA---ATTCAGGA---GTAGCAG-GTAGGAGTGC-AGTCACTCTGATCCGTTGGCTTGGGCTGGA-----ACctaggtgtgagagctt-------------ggccagctccctcgcttctccgagtctcagtttccccaagtgcaggaaagaggtaataatggtgtctgccttctccaggcttttctgggacgttaacaagatagcatggcagaagcagcac--cccggcaaacTTATCAAGGGTAGCCAGGGCTCCCTGGCTCCTAGGAGCCTCCAACCGGCCGGCCACAGGCAGAGTTCGCCTAGCTTTGG-ACGAGGGCCCATCACTTCCTGGTTGTGTGGCCCTAGAGACTCCCCAGC s rn2.chr12 14635654 724 - 46874691 TAACAGCCCTTTA-----TTGTGGATGTTGGGAGGTCCCTTGGGTTGGTCTTGGAAAACAAGGCTTTGGAATTTTAGCTACTAAGACAT-AGAGGGCCAGACTCTGGAAGTGACTTAGTCGTG----------------------------------------------TGGTCCTAATGCTAAG---------GCAGGAGCTGGGTACCTTCTGGTGTCC--TTTGCGTCTATGACTTTGCATAAATACAGCAA----AGCTTTGG--CCGCAAGCCTTAACACAGCCACCGTACAACGGCACAAGGCAGTAAG-----------CAGCCACCAGACTGCCTGGAATCCTGCCTACCTA----GGCAGTTTTCTTACAGG-GAGGGCCACAGGAACACAAGGTGGGTGACCTGCTTGCAAAACCCTTCTGCCTCCCTG-TAGCTCCTCCCAATCTCAGTTTCTTCATCTGAAAGAGCTAGGA---GTAGCGGTTTAGGAGTGC-AGTCACTCTGGTCTGTTGGCTAGGGCCGGA-----ATCTAGATGTGAGAACTTGGCCAGGTCCAtcggccaggtccatcgcttctcttagcctcagtttccccatctgtacgaaacaggtaataatggtgtctgtcttccccgggctattctggggcgtaaacaagatagcatgGCAGA---AGAAC--CCCAGCAAACTTATCAAGGCTAGCCAGGGCTCCCAGGCTCCTCAGGGCCTCCTA----CCGGCTACAGGCTGAGTCTGCCTAGCTTTGG-ACGAGGGCCCATCACTTCCTGGTTCTGTGGCCCTAGAGCCTACCC--- a score=1858.000000 s hg15.chr12_random 505819 25 + 590431 AGGCAGGAAGATGTCCAAGCCCCGC s mm3.chr16 38286933 25 + 98986639 AGGCAGGAAGCTGTGCAAGTCCCGC a score=7747.000000 s hg15.chr12_random 505844 96 + 590431 gcggtggaggcggcggcggcggcggcggcggtggcagcgacggcCCCGGGCCCGGAGATGGTGGAGCGGAGGG-GCCCGGGGAGGCCCCG--CACCGAC s mm3.chr16 38286958 73 + 98986639 GCGGTGGAGGCGGCAGCAGC---------GGCGGCTGCTCTGGT------CCCGGAGATGGTGGAGCAGAGGG-GCC--------TCCCG--CAGCGAC s rn2.chr10 29119487 87 + 106208427 gtggtggaggcagcagcagtagcagcagtggcggcagcgctggt----ggcccggccgtggcgagggcgagggcgcc--------ggcCGTGCAGCCAT a score=814.000000 s hg15.chr12_random 506368 21 + 590431 CCCCACCGCCCCGTCCACTCT s mm3.chr5 121806855 20 + 149719773 CCCCACC-CCCAGCCTGCTCC a score=151675.000000 s hg15.chr12_random 506389 1195 + 590431 CTTACTGAC-GCCCAGGTGCGGCTTGCGACAAAGTGGCC-GCCCCGAATGCGCTGGCT-GTGGCTCCTGCTCTTCCCAGATTCCCCAGTCACCCTGAGAGAAGTCCTCCCGTCGCAGCCCTGGAGGCTGCGGGGCTGCAGTGATTTGAGAGGGGTCAGGCTCCGGCGCTCATGGGGCTCTGGCTGTGCTGACAGGCCCT-CCAGCCGCCCTCAGCACCAAGTGGTTAATCAGGTTCCCCGGGGC----GTGTTTCTGTGC-TGAGTCCCTGCGGCTCCTGCCAGGGCAGTGAACTCCTAAAGATAGCCTAGCTCTTCACATG--------------CCCAGGTCCTTTTGACCTCCCTGTTGCGGGTAGGCTGTCTTCTTCC-TATATAG-----ACCTTGGGTTGCAGCCGACTCTCCTGCTGGCCAG-CTGTCCCCTTAGTGATTTAGAGACCAGCGCGTTT---AGGAAACGT-----TTCACTGGACCTGGGATTCTA-AACCTGCCAGTGCTCTCCTGAGACAAT-----------GGGGGCTGGCATCCCCTGGTAGCCCAGTTTTTGAAAAACGGTGTTGTCTGATTTTCATCTTTTGTATTCCTCCTCCTCGTGA-ATGCTCTAGGA---TCTTCTTCTTCAAGCCTCTTTCAGAATAT-GCTTTTGTCTTTTTAGGAGAACGTATTTACCGGGCAGTCAAAGATCTATTCCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTTCCCCCTTCAGGAAGAGAACTCAGTTACACATCACGAAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAACGAGAAGGTAAGCTTTTGAAATGGCCTC---GTTCTGATCCCAGCTGGTCGGGTTGCAGAAGCCTCTGTCTTCTGCAAGAATGCACATATGTATTTATCCAACCTTTTCAGTCTCAGATTCGA--GAGGTTTGAGCCATGTTCTGTCTTGCTGCT------------------GAAAGAATGGCTTGTCCCAGGGTGTGTGCCCTGTTGGTTTGACAGGTTCTCCCTGCTTTCACAAGAGTTAGCATATCCTTCAAGCTTGATTGTCTTGC-------TTAGTTGCAAAAATAACATACCTGACCCACAATTAGAGAGGCTCACAAGTGCTGAAAGT-GCAGAAGTCATGAATTCAGGTTGTACAGACCAGGCAATTGCAGACCTAACTAATGT---GTTCATGTAGGGAACTGACTTCCTTCCCT-TTTATGAGCTGGCCTTGACCCCAt s mm3.chr5 121806875 1190 + 149719773 AATGTTTGCAGCCAAGGTGCGGTTTGCAGTGGAGTGACCCGCCCTAAATGCGCTGGCCGGCAGCCTGTGCTCTCATTGGCCTCCCC---------------CATCCCTCAGCCACAGTCCTGGGAGGTGCTGAGCCGCAGTTGCTTGAGAGGGGCCAGGC-CTATCG--CGGAAGGTTAAGGCACTA--AGCAAGCCCTCCCAGTTGGCCTCAGCACCTAGTGGTTAATCAGGTTCCCTTAGGCAGGCCTGTTTCTGTGTGTTGGTGGCCGACTCCCTAGCCTGGGGAGATAACCCCTGACT-CAGCCCAGCCCTTCGAATC-------AGTTTTCCCTGGGTCATTCTGCCCTCCCTGCTGCTGGTAGGTTAGCTCTTTCCTTAAATGGACTGTACCTTCCTTTAAGGTCTTGTCCTCTGCTGGCCAGACTTATCCCTTAGGGACTCT-----------GCTT---AGGGAGTGTATGTGTTCAGAAACCTGGGGCTTCCAGAATCTGCCGCAGCTCTCCTGAGAGAGCGAGAGGTCTCCTGGGGCTGGCATCTTCTGGTTGGCATGTCCTGGAGTGGTGATGAAATCTCTTTTGTATTCTTCCTTCTCCTTCTTCCCCTCAGACGCTGGGGGATTGTCTTTGTCTCCAAGCCTCTTTCAGAATAT-GTGTTTGTCTTTCTAGGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTACATGAGTCCGAACAAGTGCTCTGCAATGCGCTCTCCACTTCAGGAAGAGAACTCGGTTGCCCATCATGAGGTCAAATGCCCGGGGAAACCATTAGCTGGAATCTACAGGAAGCGAGAAGGTAAGCCCC--GAACGGCCTCATTATTCTGCTTTCAGCTACTCAGATTGTACACACTCAGGCTCTC---------GTACAT---------------CTTTCCAGTATGGGGTGTGAGGGAGATACAAACCGAGTTCCTCCTCTCGGGGAGAAACACACACAGGTGAGAAGGAGGAGGATGTGTCAGGGTGCGTGTCCTG-TGGTCTGACAGGTTTTTCCTACTTTCACAAGAGTTAGCATATCCTTCAGTC----GTGTCTTGCCACATTGAGGGGGGGAAAAATAACACACCCGACCTGCAATTGGAGAGGCTTATGATGGTTAAAAAT-GCAGGAAAAGTGAGTCCAGGTTGTACAGAGCAGGCGGCTGACTGC------AGTGTGCAGTAGACCCAGGGGATCAATTAACCTACCGTTGTATGG--------------CAG s rn2.chr12 14637014 1173 - 46874691 AGTGTTTGCTGCCAAGGTGCGGTTTGCAGTGGAGTGACC-GCCCTAAATGCGCTGGCCGGCAGCCTGTGCTCTCATTGGCCTCCC-----------------ATCACTCAGCTACAGTACTGGGAGGTGCTGAGCTGCAGTGGCTTGAGAGGGGCCAGGC-CTGGCG--CAGAAGGTTCAGGCAGGA--AACAAGCCCTCCCAGTTGGCCTCGGCACCCTGTGGTTAACCAGGTTCCCTTAGGC----CTGTTTCTGTGC--TAGTGGCTGACTCCCTAGCCTGGGGGGCTAACCCCTGACT-CAGCCCAGCCCTTCGAATCCAGAGTCAGTTTTCCCTGGGTCATTCTGACCTCCCTGCTGCTGGTAGGTTAGCTCTTCCCTTAAATGGACTGTACCTTCCTTTAAGGTCTTGTCCTCCGCTGGTCAGACTTCTCCCTTAGGGACTAG-----------GTTTTTAGAGAAGGGTATGTTTCCCCCAAACTTGGGACTTCAAAGTCTGCCGCTTCTCTCCTGAGAGAGC------TCTCCTGGGGCTGGCATCTTCTGGTTGGCATGTCGTGTAGTGGTGATGAAATCTCTTTTGTATTCTTACTTCCCCTTCTTCCCTTAAAACGCTGTGGGATTGTCTTTGTTTC------TCTTTCAGAATATTGTGTTTGTCTTTCCAGGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTACATGAGTCCGAACAAATGCTCTGGAATGCGTTCTCCACTGCAGGAAGAGAACTCCGTCGCACATCATGAGGTCAAATGCCCGGGGAAACCATTGGCCGGAATCTACAGGAAGCGAGAAGGTAAGTCCC--GAATGGCCTC---TTTCTGCCTTCAGCTGCTCAGATTGTACACACTCACACTCTC---------ACACTT---------------CTTCCCAGTGCCAGGCGTGAGGGAGAGAGTAACCATGTTCCTCCTCACGGTGAGAAGCACATACAGGTGGAGAGGAGGCGGATGTGTCAGGGTGTGTGTCCTG-TGGTCTGACAGGTTTTTCCTATTCTCAC-AGAGTTAGCATATCCTTCAGGC----GTGTCTTGCCACA---AAAAAAAAATAAATAACACACCCGACCTGCAGTTGGAGAGGCTTGAGATTGTTAGAAATGGCAGAAAGAGTGAGTCCAGGTCGTACAGAGCAGGCAGCTGCCTGC------AACGTGAAGTAGACCCAGGGGATCAATTAACTTACTG-CGTATGG--------------CAG a score=33989.000000 s hg15.chr12_random 508028 734 + 590431 ACTGAAACCT-----------------CTTAGACATCTTGCTCTAATCCAAATATTCCCTTTCAAAGCTGCAGTG---GGGAGTGTCAGCTTTCCCCAATTCACCATGCTCTCTTCTAATTAAAACTTGTCTGAAAGAAGCAGAGCCTCT----------GGCTGCCAGCAGCTCCATACAAGGAAGCCTTGTGTTCGCTAACAG--AAAGTGTCATAAATGACGATTTGGCATGACCTCTGGGGCCGGATCTGAGAACCAGGGCTGGGCAAGCCCTGAACTGGGGACAGGAGCC---CACCCTGT------GCTTG------ATCTCCCCTGGTACAC---AGGGCAATATTGTTTTATTTGATCTtcagatgacttgggttccaatcttaagtttgccacctgaaagaaggaggcttagataggttgctgctctcttctgagcctctgttctctcatctgtaaatggggagagaggagtctgacctcacacacacaggactgttttgaagGGTGGTTGCAGCGTGGATGCCAAAGGGCTTTGTGGTGGACTCCATGTG---------CCAGCTCTTCACCCCTGGACTGCCAGC-TCAT-CCCTGGACCTGTGGCACTTAGA-------ATTCCTGCC-CATAGGGTTGGGGA------------GAGGCGCTGTCTATAAATGGTAGTTGCCCGGACTCTAGTCCTTTAAAATAGGGCAGTCTATACATTGTAC--------CAAATGGTGGCCTGGTATACAAGCTAGTATATTTGGCTCATGGTTTTACTAAAT-GGCCATGATTAGAATTTTGGGTCA s mm3.chr5 121808455 669 + 149719773 ACTCAGAGCTATGAACAAGGC-AGTGGTCTAAGAGCCTTGCTTTTTCCCAGATTTGGCGTTTTAGAGCTTCAGTG----AGAGTTCCTGTCCACCTC----CACAGTTCATTCCTGTGAACGAATCTTACCCAACTG-AGTAGGTCCCCCCTCCCCCCAAGACTACCAGCAGGTCTTTAGGACAAAGTTGTGTGTTCACCAACAGTTG----GTCAGAAGTTCTAA---AGCCCAGCTTATCAAGCTGTCTTTGAGAACTAAGGTTGG---------------------GGAGCC---TACCATCG------GCTTTTTTTTCCCCCACCCCCACGAATTGAGGAGCTATGTTGTCTGA----GCCACAAAGTAACTTAGATGGTAGCTGT--GGCTGCCACTTGGAAGGAGGAGGCTCTGGCAAGCTGCAG--CTCTTGTGAGTCCTGGGTGACACATCAGTCAGTT----GAGAGGAGTCCCGTCT--CATCCGTTGGGCTGTTT------------------GGGGTGTAGAAGGGCTTTGAGATGTTG-----------------CCACTGCATCACC-----ACATCTGTCTACATCCCTTGTGTCTACAGCTATCAGGAGGTTGCTTACCTGCCGCCCAGGCTTGGCCA-------------------TAGCCAC------------CTTGCATCC----CTTCCAAAATCGGGCAGAGTGAATATTGTCCATACAATGCCGGTGGGGGCTTA------------------CTGATCCCTGGTGCTGTTAAAT-GGCAGTGATTAGGATTTGGGGTCA s rn2.chr12 14638562 655 - 46874691 ACTCAGCTCTGCGAGCAAGGCGGGTCATCTAAGAAGCTTGCCTTCTTCCAGACAGGCCCTCTTAGAGCCTCAGTGAGGAAGGGCTCCTGTCTACCCC----CATAGTTCATTCCTGTGAATGAGTCCTGCCCTACTG-AGCAGGGCGCCCCC--------GGCTACCAGCAGTTTTTTGGGATGAAA--GTGTGTTCACCAACAG--A----AACAGAAGTGCTAA---AGCCCAACCTCTCAGGCTGTCTGTGAGAACTAAGG-GGG---------------------GGAGCCCTGTGCCTGTGGAAGGAGCCT-------CTCCACCCCCATGTAT---GGGGCTGTGCTGT----------------------------------------CTGCCACTTGGAAGGAGGAGACTTGGGCAAGCTGCCATTCTTTTGTGAGTCCTGGGTGACATTCCTGTCCGTT----GAGAGGAGTCCTGTCT--CACCCATTGGGCTGTTT-------------------GGATGTAGAAGGGCCTTGAGATGCTACGGCTGTAAGCACAGTCCCACCGCATTGCC-----TTATCCTTC-ACAT-CCTTGTGTCTGCAGCTGTCAGGAGG----GTACCTGCTGCCCAGGCTTGGCCAAAGTCCCCGTCTGGGGCCTTAGCCAC------------CCTGCATCC----CTTCCAAAATTGGGCAGAGTGAACATTGTCCGT---GTGCTGCTGGGGGCTTA------------------CTGATTCCTGGTGCTGTTAAATGGGCAATAATGAGAATTTGGGGTCA a score=7958.000000 s hg15.chr12_random 509632 301 + 590431 aaagcgtatgagtcggtggt-ttttagtatattcacagggttgcgcaaccattaccacagtctaattccagaacgtttcc-atcaccccagaaagg---tacccattaggcgtcaccttcgattccccatccctctagtccaaggtaaccattaaagtactttctgtctctgtggatttgcctgttttggacatttcatatggatggaatcacaaaatacatagccttttgtgtctggcttctttcactgagcat--------catgtct-tcaaggttcatccgcggtgt----aataagtatcagtgcttcattcct s mm3.chr5 121809887 310 + 149719773 aaagtgtgcacttgggtgatattttagtgtgtctgc--tgtcacacaac---tgccacctcttatgtccagaccattttttgtctccctacaaagaacatactcattggtcctcactttgca--ctccacccccacagctctaggcagccctgaaactcctctctgcgtctgcagccttgcccgttgtggacatttcatgcaaatgaagtcataggctatgtagccttttgtgtttggc--cttttactcagcgtgtactcagcgtgtttgtcagagtcagtccctgttgttcatagtgtgtgtcaatgctttgtacct a score=7632.000000 s hg15.chr12_random 510177 307 + 590431 tgcccagcccttcattcctttttatggctggataatactc------ccttttgtggataggccacatttt----gtttattcatctgttgatggacatttgggttgtttccactttttggctattacaaataaactgttacgttcc-tgcatagatttttt-tggggacatatgtttttaattttctggaatagatgcctaggagtgaaattgctgggtcatatggtaactctgtgtttaactttttgggaaaatgtcaaactgtttctaaagtggctgcaccattttatatCTGTGAGCAGCGTACTATTTACTTAAt s mm3.chr5 121810197 282 + 149719773 t-------------------tttatggctgaaccataatcatcattcccagtgtggacagaccgcattttaactgtttgtacaccgg--gagggctgtcgggaatgttt--gctctcgggctaatgtgcataagctaccacgtttcatgtacagagtttttgtgtagacatgtgtttttaatcct---gagtagatgtcagaatgtggagttgctgggtcacatgataattctatgtttaactttgtaaggaaacctagaaactcttctaaaattggtgtgccatct---ATCTCTGGGTAGTATA--------TTAGT a score=708.000000 s hg15.chr12_random 510792 92 + 590431 TATTTACTTAGTTATTTAAAAGTAAAACATT--------TTTTAAAAAGGTAAGCAGTTTTCCAACACTGTCAC-TCCACAAGTGTTTTAAGTGACAGATC s mm3.chr5 121810479 94 + 149719773 TATTTACTT------TAAAAAGTAAATCATTAAATCCGTTTTTTAAAAATAGCACAGTTGACCAGCGGCACCAAATTTGCTGCTGTTATCAGCGA-GGCTA a score=81183.000000 s hg15.chr12_random 510884 1067 + 590431 ATTGCAGTGTGTCTCCCGATA---CCCAGGCCAGTCTGCTGGGGCACCATGCTGAGAACTGCTGTGAACCTGGGGCTTCAACCCCACTAGAAGGGGACCTTCTTTTTCTTCGGAGTCTGAAATGAAGGGTGCCAGGCAGCTCTTGGGGAAGAGTTTCTGCTTTGTCACCTTACTCCTGTCCCCTAATGCT-----GTCCCAGCCTTCAGGAATGGAGCTTTTGATCTGAGTCTGCAACCTGATTCCTGAAAGCTATTGATCAAGCACCCTGCCAGCGTCTCCGTCTCTGGTGCCTCTCCCTCACAGGCTCTCTATCTCCCACGTCAAGATGCAAAAGCCTAAAACCTCTGCCCAGTGTCTTGGTCAAAAAATCGAGCTGGAGCTAGGCACTCCCCCTGTCATAGCCCATAGTGGACACGGGGCTTAACAGGC-CAAGGGCAC---TCCTG--CCTGACAAACCCAGGATCCTGTCTTCTCAAAGCTTGTCTTAGAAT---GCAGCTGGTCGTCTGGAAATTGAGAGACAGTACAGAATAAACCCGTC--TTTCCCCCACCTCCGCC--TGCAGAGAAAAGAAATGCTGGGAACGCAGTACGGAGCGCCATGAAGTCCGAGGAACAGAAGATCAAAGACGCCAGGAAAGGTCCCCTGGTACCTTTTCCAAACCAAAAATCTGAAGCAGCAGAACCTCCAAAAACTCCACCCTCATCTTGTGATTCCACCAATGCAGCCATCGCCAAGCAAGCCCTGAAAAAGCCCATCAAGGGCAAACAGGCCCCCCGAAAAAAGTAAGTGCCCCATTCAG-----TCCTCTTCCTAACGTGGAGCAGTTTGGTTCCTCTGATGCCAGGGAAGCCTGCTCAGGTGCCCATGGGGGTTCAGTGGCCACCTCTCAG----------CCTCTCTCATGTCA---AAGACTCAGATGCCCC------GAGTCATCAGCAGGGATGCCACTGTTTGTCAGTTTCTGGATCTG-----------GCATGGGTCCAGAGTTCAAGAGCCTCTCCTTCCTCCCCTCCTTACCCACCCCAGCATAAGCAGCCTTTGttttttaaatttatttttttttGTTTGTCTTTTTTGGTGATTGGTGt s mm3.chr5 121810573 931 + 149719773 TTTGTTGTGTGCCTCATGACAGGATGCCTGCC-TTCTGCCCAGGTGCCATCTGGAGAATCTCTGGGAGCCCGGGACGCCAACCTTTTTAGAAAGGGGGCTT-GTTTGGCCAAGATTCTGCAGTGAAGCATGCCAGGCAGTGAGTGGGGAAGAGGTTGGGCTTTGTCCCCTCACTCC-ACCCACCAGTGCTCACTAGCTCTTGCTTTGGGACAGAGCGTCTTTTCTC-GGGTGTGCAGGCCAGTGTCTGGAAGC-------------------------CTCCAGCTTTGTTAGCACTTC------GG----CTTTCTCCCACACCCACATACAGAGGGCCAGGCCCTATCTCC-------------------------------AGGTACTTCTGCCTG-ATTGTCCCTTGTGGACAC-TGGCACAGTAGGCTCCAGCACCT---TCCTGACCCTCACAGA---GTGCTCCTACCCT-----AGCCTATCTGAGTGCTGACCAGT------------------------GCGTGGAGTGAATAAATC--TATTTTCCACCTGTCCCGCTGCAGAGAAAAGGAACACCGGGAACGTTATACGAAGCGCTGTGAAGTCAGATGAACAGAAGAGCAAAGACACCAGGAGAGGTCCCCTGGCGCCTTTTCCAAACCAAAAATCCGAAGCAGCAGAACCTCCAAAAACTCCACCCCCATCATGTGATTCTACCAATGTAGCAGTCGCTAAGCAAGCCCTGAAAAAGTCCCTCAAGGGCAAACAGGCCCCTCGGAAAAAGTAAGTAGCC--TGGAGTGAAGCCCTCTCC------TAACACCACTTGGTTCCT----------GGGGCCTGGCTCAGGTGTGTACTGTGGTTGTGTAGTCTGCTGCTAGGCC----TCTTCTCTTCTGAGTTA---CACGGTCTGGTTTTTCCCTCgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGACAGAGAGTCAGAGTCCAGAGGTTA-GG------CCTCCCTCCCTATCTCTTCCCCCCCATC--------CCC-------------------------------------------CAGGAGT s rn2.chr12 14640787 817 - 46874691 TTTGTTGTGTGCCTCGTGACAGGGTGCGTGCCAGTCTGCCTAGGTGCCGTCCGGAGAACCTCTGGGAGCCTGGGACCTCCACCTCTTTTCGAAGGAGGCTTTGTTTGGCTAAGATTCTGAAGTAAAGCATGCCAGGCAGTGAGGGGAGAAGAGTCTGGGCTCTGTCCCCTGGCTCC-ACCC--------------------------------------------------------GCCAGTGTCTGGAAGC-------------------------------------TGAGACTCA------GG----CTGTCTCCCATGCCCACATACAGAGGGCCAGGCCCTGTCTCC-------------------------------AAGCGCTTCTGCTGG-GTTGGCTTCCGTGGACAC-TGGCATAGTAGGCTCCAGCGCCTCCTTCCTGGCCCTGACAGA---ATGCTCCTGTCTT-----AGCCTGTCTTAGAGC---ACGGT------------------------GCATGGAGTAAATGAGTCCCTGTCTCCCACCTATCCCG-TGCAGAGAAAAGAAACGCTGGGAATGTTATCCGAAGCGCTGTGAAGTCAGAAGAACAGAAGAGCAAAGATACCAGGAGAGGTCCCCTGGCGCCTTTTCCAAACCAAAAACCTGAAGCAACAGAACCTCCAAAAACTCCACCCCCGTCATGTGATTCTACCAGTGTAGCGGTTGCTAAGCAAGCCCTGAAAAAGCCCCTCAAGGGCAAGCAGGCCCCTCGGAAGAAGTAAGTAGCC--TGGAG-----CCCTTTCA---GCACAGCACCACTTGGTTCCC----------AGGGACCTGCTCCCTTGACTATTGTGGTTGTGTAGTCCACTGCCAGGCCGGCCTCTCCTCTCCTGAGTCATCTCACTTTCTGGTGTTTCCCT----------------------------------------GTGTGTGC----------GTCAGGGTCCAGAGGTCAAGG------CCTCCCTCCCTATCTCTTCCCCAGAG---------------------------------------------------------AGGAGT a score=42224.000000 s hg15.chr12_random 512536 639 + 590431 AGCAGCCCGTCTTTGAAACTCCTCTGAGGCCCTCATGGGCAGGTGACTGAGTG---ACCTGCAGGCTCCAGTGGACAAAGGTGTTTAAGTGACATCATCTCCAAGGAGCTGTGTGCCTCCTCGGTGTGTGCCTTCTAAGGAGCTGTGTGCCTCCAGGTTTTCAGTCCTGATACTTATTTTCTCCTCTTCCCCTCTTACCCAGAGCTCAAGGAAAAACGCAACAGAATCGCAAACTTACGGATTTCTACCCTGTCCGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGTCACGTGCTTTAAATTCCAGTTTGTGGAGGGGCAGGGTGGCCCACCAAGCAGTGCTTGGCGTGTGCGTAT---GTGTGTGTCCTCAGCCTTGTTTTCGTCATCTTGGAGCAAGTCTCTTGGCCCCTCTGGACTTGGTTTTCTCCTGGATCTATCGGGGATCCTCACAAAGCTTGTCCTG----CCTTTCTGCTGGGGTCGCTGCAG--GGCTTGGTTAAGACACTTGTGTGAAGGAACCTTGTGACTTGTAGCATGTGGCAGGGAAAGCCAGGTGTGACTCTGAAGGTGGATTTTCCAGGACTTGTTGGCAGAGCCATTGGGAGCCTGGGACTGTGGGAAAGGCTGCCTGTTCTTTC s mm3.chr5 121811505 497 + 149719773 AGCAG-CTGTC-------------TGGGACCCGCCCAGGTAGATAAGCAGACATGCACCT--AGGTCCCAGTACACAGAAATATTTGAGGAACA-CGTTTATAGGGAGT----TACCTCCTGGGTCGGAGC-------AGGGCAGCGGGCCTC----------------ATGTTTATTTTCTCC-CCTCCCCTCTTAACCAGGTCTCAAGGGAAAACCCAGCAGAATAGAAAACTCACAGATTTCTACCCTGTGCGGAGGAGTTCCCGGAAGAGCAAAGCTGAGCTGCAGGTA---AGGTCTGATCCGCTGCAG--CGGGGAGAGGCAAG---------CAGCCAg-----ggtgggggtgggg---gtggggTG------------TTT-----------AGCGTGTGT----------AGGGA---------AGCCTGGGT------GAGATCGTC-CTCTGCTTGCTCTA----CCTTCCTGGTGAG------GCAGGAGGCATTCTTAAGAC---------------CCTGGTACCTTGTACTTGATGCCGTATAACA------------ATCAGACTGGCTTTTCCACGGTGTTTTGGCAGCG-CGTTTGGAGCCTACAACTGTGGGGAAAGCTGCCTGTTGTGTC s rn2.chr12 14641605 504 - 46874691 AGCAG-CTGTCCTTGGAG----TCTGGGGCCCGCCCAGGTAGATGAGCAGATGTGCACCT--AGGTCCCAATGCACAAAAGTGTCGGAGGAACA-GATTTACAGGGAGT----CGCCCCCTGGGTCTGAGC-------GGGGCAGCAGGCCTC----------------ATGCTTATTTTCTTC-CCTCCCCTCTTACCCAGGTCTCAAGGGAAGACACAGCAGAATAGAAAACTCACAGATTTCTACCCCGTGCGAAGGAGCTCCAGGAAGAGCAAAGCTGAGCTGCAGGTA---AGGTCTGATGAGCTGCAG--CTGGGAGGGGC-------------------------GCGGAGGCCAGGCCCGTGGGTTTCC----------TTT-----------AGCCTGTGT------CCACCTGGA---------CCCTGGGGT------GAAA-----------CATGTAGCACAGGCCATCCTGGT---------GCAGGAGGCATACTTCAGACCACCGTGGAAGGAAGCCTTGTGACTTGTTCTTCATGGCATAGAAAG------------GTCAGATGGGCTTTCCCAGGATGCTCTGGCAGTG-CGTTTGGAGC------CTGCGGGGAAAGCTGCCTGTTCTTtc a score=36112.000000 s hg15.chr12_random 513420 635 + 590431 cagctaactgttACTATCGCCACCTCTGCTTCCTCAGTGTTGTC-ACTCCCGTCTGCTCTTTCCCACGCTGCTGCCATACT---AGGAGCCTGCAGACCAGTGAGCAGCACCGGCTGGAAGGCCAGCTGGCCTATGCGGGCCTCCGCTGCCATGTTTGCAGAGGGTTGAGCTATGCGGCAGGCA-----GTCAATATTTGCTGCAGTGAGGTGTGGTTATTGCCTTTCTGTGAAGGAAACGCAGGGCATGGCAGGTCCCTCTGCTCTTCCCCCTCAGGGACACCTGGGGCTGCCCCTCTGCTCTCCCTCACCCCCACAGTGACCACCGGGTTGGGAGAGGTGCTCAGGATTGCATCCTACACAGAGAGGTGGGGACCC------------CGGCTTTGGCAGTTTCAGCATTTCA-GCCCTCATGCGGACTCCTTCAGCGTTCTTGATGTTAAATGCGCAGATACACAGTGGTCTAGTATTCTTTCTCTTTTTCTTTTAATTGATGAAGCTTCatttaaa-aaaaattttta--aaaaGGTCCATTT------TCTTCCCCACAGA--GAG-----CAGCTTTGGTTTTATTGCCTGAAAAAGGCAATGTCTTTCAGCCAAGAATGAGCTGTTTAAAA----CATTTGTCAGCAGTGGGAGGCTGTGCTAGGTCACt s mm3.chr5 121812824 526 + 149719773 CAGCTAGCTGAGACTGTCACCCTCCCTTGTTTCCCAGTATAGTCTGTTCCCATCTGC------CTGC-TTCCAGCTAGACATGAAGTGGCTTACAGGAAAG------------------AAAATAACGGGTCTGGGTGGACCCACAC--CCTTGTGCGCAG----------CACCCAGTGGGCAGCCT-GTCTATA-TCGATGCAGCGGG---TGGTTATTGCCTCTCTGTTCTGAA------------------TCCCACTTGTATGCCC-----AGGGAGTCAGGGTCGGTCCCTCC-CTCTCCTGCACGTCTGT--------CTGACTCTGAAG----GCTTCAGATCACCTC---------------GGAACAG------------------------TCTGAGCCTTTCCTGTACTGCTGAGGTCGCC-TCAGCATCAGAAGTGGCAGGTCTAT--GTGCAGAG------------------------CTTTCCGGTGATGCAGCTTTATCTAAAACCAAGCCCACAGGAGAGGGTCTGCTTTCCCCTCCCTCTCCACTGGCCCAC-----TAGCTTTGACTTCATTTCTCGTGAAAGGCGGTGTC--TCAGCCAAGAATGAGCTGTTACAAACCCCTGCCTGCCAGCCGTGGGAGGCCGTGCTAGGTCACT s rn2.chr12 14642988 551 - 46874691 ---CGAGCTGAGACTGTCACCCTCCCTTGCTTCCCAGTATAGTCCGTTCCCGTCTGCGTCTGCCTAT-TTCTGGCTAAATGTGAAGTGGCTTATAGGGAGG------------------AAGGTAGCCAGTCTGGGCAGCCCCACGC--CCATGTATGCGG----------TACCCAGTGGGCAGCCTTATCAACA-TTGGTGCAGTGGGGTGTGGTTATT--CTCTCTGTTCTGAA------------------TCCCACTTGGATGCCC-----AGGGCGTCAGGGTCAACACCTCA-CTCTCCTTTAAGACT----------TTGACTCTGAAG----GCTTCAGATCACCTC---------------AGAGCAGGGGAGAGGGGATTGATTTGGGCAGCCTGGGTGTTCTGTATGCTGCTGAGGTCCCC-TCAGTATCCGAGATGGCAGATCTGC--ATGCAGAG------------------------CTTCAGGTTAGTGCAGCTTTATCCAGA-TCAAGCCCAAGGGAGGGGGGCTGCTT--CCCTCCCTCCCCACCTGCCCACCCCACTAGCTTTCACTTCATTTCTTGTGAAAGGCAGTGCC--TTGGCCAAGAATGAGCTGTTAGAAA----TGCCTGCCAGCAGTGGGACGGTGTGCTGGGTCACT a score=46521.000000 s hg15.chr12_random 514683 1017 + 590431 GACAGCACTGCAGATGGTGAGGTGGTGCCAGACCACAGAATCCCAGACACCTCCCAGCCAGGGTTGGAGCTGCGGTGTGCCCACACACAGGGCCTCTGCTGAGCGTCCACCAAGGGCTGCTGTGGACTTTAGGGTAGG---------GGGAGCCGAGTTGGCCTTGTTAATAAGAAGCAAGAGT-TTGTGCT----GGGCAGAGTG-----------AAGGCTGCGATGGGACAGGATGCAGGTCT--GCTAAATCTTGCAGCAGATGAGC-----AGAAGGGAAGAACACACTTGCTTCCCTAAAGCACAGTCTGCAAACACAAGAAAGCTCGCCCTGTTCCTGGACCGGGAGCCGTGC---------TTTGCC--------CCCCACTGTTTGTGTTGGCTCTGCTGAGTGCAGCCATGCAAGC-TGTTGCTGGCCAGGGCAGGGAGGCCATAGCTGGCCGGGATGACGTGGCTAGAGCTGGTCAGGGTGGAATA-----TTTTCTGACTGCACAGATAAAGCCCAAGAACGGGACAGCTGGGGCTCATCTGAAGGGTGGGGTCAGTCCTG---ACTTGACTGCCATGCTGG-GCCCAGGCTGTGGATCCAGGAGGGTGGGACATAATACAGCCTGTTGTTGGCCAGATGGTCTGGGGTGAAACTGCAATTCAGAGCCTCTTATATACCTCCACTGAGGCTGAAG-ACAGCAGCCAGGGCGGGCCTAGCGCCAGGGCGTGGGTCCTGGGCAACAGG----------GTGGGATCAGGGCTGCTGGATTTGGACACAAG----GTGGGCCTTGGAGAGATGCCCTATCCACCAAGTGCTTCACTGCAGGGGCCCCTTGGCCGGCCAGCCTGGCTGTGGGTGGGGTGGCAGCCAGCAGCGGGGCAGGGACCATGCCTCTTGGCAATGGCTGGGCTTCCTCATG---CCCAGCTCGGCCCCAGGGCCAGATGTGCA--AGCAGCCTGCTGATTCCGCTTGGGAAGGTCCCCTCCTTCCTGGTCACAGGCGCTTCTCAACTGCCCTAGTTCCAACCTTGTATCCCTCCCACTCCATCTCCTTCTAGGCCCATCTGTGG s mm3.chr5 121813368 852 + 149719773 GAGAGCA-----------GAGGTGGTGCCTGGCCACAGAACCCAGGGCTCCTCCCAGCCA-GGCAGGAGCCACAGCAGGCCC-CACACAGGG--------------------------GCTGAGGACTTGGGGGTGGGGGTGGGGGCAGTACCTAAGCCAGCAGTGCTAAAGAAAAGCCAGGCTCTTGTGCCTGGGGAGCGAAGGA-----------AGGGCTGCAGAGGGAC----TGCAGCGCTCACCTGCATACTGCAGCGGACACGGTGGTGCGGTGGGGAAAGCACAGC---------------CAGCGCC--------AGAGAG-----------------TAGGGAGCAGCACAAGC-----TGCACC--------CCTCACTGTTTGCCTTGGCTCTGCTGAAAG-AGCACTGTTCCC-TGTCGCTGG-CGAAGCCATGCAGTGACAGCTGCCCGTGGCGCCGTGGATGTGACTGTCGCTGGCAGAGTCTGTATTCTCTTGACTG--CAGAGAAAGCTGGAGAGCATAGCAG-TGGAGTCTCTCAGAGGGCTGAGGCTCCCCCTG---GCCTAACT---ATGTTAG-CTAGAGGCTGAGGA--------GGTGGGCC----AGGAAACTGTACTTGACCAG-TGGCCAAGAGGGAAATCAAAGTACCAAG-TTGTGAGGCACCTT--GTGGAGCTGAAGAAAAGCTGCTGGGGCAGAACCTGGTCCAGAGTTCAGAGCTGGCGGGAGGGAAGGAAGGAGGGAAGGATTTGGACCATAGGGTTTGAGCACAGG----GCAAGCCATAGGGAAATGCCC------CCA---GCCT------------------CCCTACTGGCCTGCCTATTGGTGGGGTGGCAGCC-ACACTGTAGCAAAAACAA---CTGTTGGCAGTGCCCTGGCTTCCTCCTCCCTCCTGATACTCCCTGAGGAC------TGTA--AGGAGCCATCTG---------------------TCCTCCCTGT-----------------CTCCCTTCACTGAGGCCTTG-------CCTACTCCGATA-------------------- s rn2.chr12 14643557 839 - 46874691 GAG--CA-----------GAGGTGGTGCCTGCCCACAGAACCCAGAGCTCCTCCCAGCCA-GGCAGGCGGCATGGCAGGCCC-CACACGGG-----------------------------CAAGTGCTGCTGGGTGGG---------AGTACCTAAGTCAGTGGTGCTAAAGAAAAGCCAGGCTCTTGTGCCTGGAGAGCGGAGGCCGGAAGGCTGCAGAGCTGCAGGGGGAC----TGCAGAGCTCACCTGCTCACTGCAGCTGATAAGC-----AGGCAAGGATAGCACACC---------------CTGTTTCCAGATA-GATAGAG-----------------CAGGAAGCAGCACCAGCAGGCAGGCACCATGCTGTGCCCCTCTGTTTGTCTTGGCTCTGCTGAAAG-AGCACTGTTCCCCTGTCGCTGG-CATGGGAGGGAAGTGACAGCTGCCCGTGGCGCCATGGATGTGACTGTTGCTGGCAGAGTTTGTATTCTGTTGACTG--CAGAGAAAGCTGGAGGGCATGGCAG-TGAGGTCTGTCA-AGAACTGAAGTTCCGCCTGCTCACCTAACT---AGGTTAGTCTAGGGGCTGAGTA--------AGTGGACT---GAGCAAGCTGTACTTGACCAG-TGGCCAAGA-TGAAATCAAAGTACCAAG-TGGTGGGACACCTT--GTGGGGCTTAAGAAAAGCTGCTGGGGCAGAACCAGGTCCAGAGTTTCTAACCTGGAGGAGCTA------------------------------TTTAAGCACAGGGCAAGCAAGCCATACGGAAATGCCC------CCA---GCCTTGTGGC----------TGCCTGGCTGGCCTGCTCCTCTGTGGGGGGCATACT-GTACTGCAGCAGACGCAG---CT----------CCCTGGCTGCCTCCTC---TCTGATACTCCCTGGGGAC------TGCGACAGGAGCCATCTG---------------------TCCTTCCTGT-----------------CCATCTTTCCTCAGACCTTG-------CCTACGCTGACA-------------------- a score=2640.000000 s hg15.chr12_random 517047 146 + 590431 aataattttaattttatagaaaagttgcaaagataatacagagagttccccagactccttacccatcttctctca----------cttaagttactctggtgaatttgtcacagctaagtaacaaccaacattggtatattactgttggttgaaGt s mm3.chr5 121815009 147 + 149719773 agtaattttgattc-atagatAAATTACAAAAGCAGTACAGATACTTCTC-AGACCCTTTACTAACCTG-TCCCATTATTAACATCTCGAGTCCTTCTG-TAAATCTGTCAC---TAAGGGG-AAGTATCATTGACAC-TTCCTGTTAGCTAAGTA a score=19609.000000 s hg15.chr12_random 518571 320 + 590431 ----TCatttaca-------------ttttaaaagacccctctggctaccttgtggagaactgagtgttccctgggg-tcagagtgaaagcctggtgactagcaagggggccggagcggggccggggccgtggctgggctgcagggccgcagtgggaatggagatggagaggaggtggcaggatttgggactgtccttgaggttactcattcac----------cattgttcccagcacagactgcagcgcctggcacattgcaggtgtggattgagtgcctgGAAAAGCTGCAAGCTGGTTTGGGCCTCTGTGTAGGGGG------AATGGGCTGAGCTCAGCAGTTGGTGTC------ s mm3.chr5 121815210 303 + 149719773 ----TTAGTAACAATAACAAGAATCTTTTCAGAAGAGTCCTGTGGT-ACTAGGTAAAGAATGGAG-----CCTGGGT--TGTAGTGGAAGCCCTGAGACTCAAGAGGTGACTG---------TCAGATAATGGCTTGGCGG-AGGACAGTAGTA-----GGTGCCAAGAAGAAAGTGGCTAGATATCAGGC-------------ACCCGGTCTCACAACCTCAACAGTGTCTCCATCATGTATCCCAGGGCCTGTGCCAGGGTAGGTGTGGACTG---------GCTAGCTGTG--------CCAAGCTCTGCCTACAAAGTCTAGCAAGGGTGTGAGTTCAACAGGTGGCAAGACCTCC s rn2.chr12 14645547 328 - 46874691 TTTCAAAGTAACAATAATAACAATCTTTTCAGAACATTCCTGTGGC-AATAGGTAAAGAA-----------CTGGGTATTGTAGTGGAAGCCCTGAGACTCCGGAGATGGCTG---------TCAGATAATGGCTTGAGGG-AGGACAGTAG--------GGGCTGAGGAGAAGGTGACTAGATCTCAGACTGTCC-TGAGGTCACCCGTTCACACTCCCTCAGCACTGTCTCCATCACACATCCCAGGGCCTGTTCCAGGGTAGGTGTGGACTGAATGACT-GGCTAGCTATGTCCTGGTCCCAGGCTCTGCCTATAAGGTCTAGCAAGGGTGTGAGTTCCACAGGTGGCAAGACCTCC a score=12713.000000 s hg15.chr12_random 518897 403 + 590431 CTGACACGTGCCATCTGGTTTGGTGAAAGTCTATGCCGTCAAGACATGCTGGTTTGGGGTGAGCCACACTGGTTTGGAGCTTCCGATCTGTCTTCATTTGGTTCCCTTTTGCTCTGTAGTATC-TGTGCAGTGGCAGA--GCAGTAGAACCCAGGGTTAGGGATGGAGGTAGGTGCAGGAGGGGTGGCCTTAGAGGAGAGGTGGATCCAGGGGTGCCCCCTCCCAGTTCTCTGTTCAGGTCTGTATTGACCCTCGGGATTGGAGGCCCTCTTCTCATCCATCGTGGTGGCCTCCATACAGGTGAATCTCAGCGA-----------TCCTAAACAGAAGTATGAGCCATCA--GACCAGAGCCATGTGGACTGCGTGTGTCCCATCCAAAGGGCACAGCCTCTGATCTGCTGTACCCGAt-------- s mm3.chr5 121815924 328 + 149719773 CAGA----TGCCTTCAGCC-AGAGGAAGTCCCTC----------CATGCT-------GGTTATCCAAAGTCCTTTGGGGCATCTGGTGTCTC----TGTAGCTCCCTCTCGTTCCCTAGCTTCCTGTGTAATGGGAGA-CACAGTGTGATCCAGGGT--GAGATGGA-GTAGCAACAGGAGA--------------------GAACTCATGGGAGTTCCCCAGC--TCCTCTGGTCCTCGCTGCATTGTTCTACTGCTTAGGAGG------------------------------CACAGACATAGCTCAGAGA-----------CCTCCAAGGGACGTATCAGTTAGCT-----AGGAGGGACAAGGAGCAGATGTGTCCTGCTTACA-GGTGCAGCTTGTGATCTGCTCTGGGAGATTCTCCATT s rn2.chr12 14645876 311 - 46874691 CGGA----TGGCATCAGCCTCGAGGAAGGCCCTC----------CGTGCT-------AGTGAGCCAGAGCTGT---GGGCACCTGGTGTCT------GTAGC-CCCTCTTGTTCCCTAGCATCTTGTGTAATGAGAGGGCACAGTG--------------AGACGGA-GTAGCAGCAGGAGA--------------------GAACCTGTGGTGGTTCCCTAGC--TCCTCTGTTCCTTGCTGTGTTGTTCTGCTGGTTAGGAG-------------------------------CACAGGCATAGCTCAGAGAGCTGGCATAGACCTCCAGGGGGAGTATCGGTTAGCTTAGCCAGGAGGGACAAGGAGCAGGTATGTCCTGCCT--------------GTGATCTGCTCTGCTCAGTTC---ATC a score=15566.000000 s hg15.chr12_random 519883 352 + 590431 TCAGGGCT-CAAGACCATCAAGCTA---------------------------------------------------------------------------------------CGCACGATG-----GGCCTAGGAGAAGA-TACTGATGCTG------TTTTTCTTTCTCTCTGCCCAGTCTGAAGAAAGGAAAAGAATAGATGAATTGATTGAAAGTGGGAAGGAAGAAGGAATGAAGGTAAGGGGCTGCTGTGCTTGCTGCATCATAGCTAAAGCTGGAAGAGCTCACCTTCCCTGGTCCCGTGGCTGAGAGTGGCCACCATGTGGCTTTCACCCTCTAATGGCCATGGTGA---CCAGGCAGACTCTATTAGGTTGTCAAAGAGCCAAATACCAAAAGTTG--TTAAGGAAATGTCTTATGAAGG---AAACATAAATGGGCT---------------------TTGTATATAAATGT s mm3.chr5 121817139 410 + 149719773 CAAAGGCT-AAAATATAGCAGGCCAGAACTGTGT-------------GTGGGACTGGATGACAGTTGCTGGTGGCAGATGGGCGAGGAAAGGCGTGCCGGGGGCTGGGGCAGCACAAGGTGTCTGTGGCGTGGTACATGAGCACTAACACTGTTCTGTTCTTTTCTTTCCTCTCCACAGTCTGAAGAAAGGAAGAAAATAGATGAGCTGATTGAGAGCGGGAAGGAAGAAGGCATGAAGGTAAG----------GCCTGCTCCA-CACAGC-------------------------------------TGAGACGAGCCACCACAAGACTG----CCTTGACT--ACATGGTCAGTGCCAGTCCCACCCCTGTAGAGTGTCAAGGAGCCAGAC-CCAGCAGCTG--AGAAGCAAGTGTGTCCTGAAGGTGCAGACAGGCATTAGCTGCTTACCTTAGGAGACACCACTTCTACTTCAGTTt s rn2.chr12 14647233 380 - 46874691 CAAAGACTGAAAATACAACAGGCCAGAACTGTGTGCCTCTTGTCCAGGCAAGGCTGGGTGATGGCTGCTCATGGCAGATGGTCGAGGAGAGGT-TGCTG------AGGGCAGCACAGGTTGGCTGTGGCGTGGCATGTGAACACTAACACTG----------TTCTTAACTCCACACAGTCTGAAGAAAGGAAGAAGATAGATGAGCTAATTGAGAGCGGGAAGGAAGAGGGCATGAAGGTAAG----------GTCCTCTCCA-CACAGC-----------------------------------------AAGACACGCCCCAAGACTG----CCTTGAGTGCACATGCTCAGTGTCAGC------------------------GCCAGAC-CCAACAGCTATTGTAAGCAAGCACGTCAGGAAGGTGCAGACTTAC-TGAGATGTCCGGGGTGGGTCAC-CCACTTC-ACTCCAGtgt a score=4625.000000 s hg15.chr12_random 520516 165 + 590431 TTAAAAGGAGAAACTAATACATTTTTAAACTGTTTTCCTAGATAATGACAATGCCCAAGAAATGTG----CTTTTCTCT------------TACTGTATT----------------TCAACCACACTCA-------------------------------------------------GTTTGGGCGAGAGGAGAAGTACTCTCTACAGTGGGGTT----CAGATGGGCCTAGACTAGGGCTCCGGGTTC s mm3.chr5 121819279 202 + 149719773 TTATACAGAGGAGAAGA------------CGGTTAGCCC---TAGTGTCGGGGTCTGAGGAACGTG----TTTTTCTCCACATGTGTCTTGTTCTGCGTTGATGCTGCAGATTGACTGAGCCCTGTGCA-----------------------GGGCCCACACGCAAACATCT----GTGTTTTGGAT-GAGGGACTATAC-CTCCAAGGTGTGGTGATGGCAGATGGGTCTGTTCTAGGAGTGAAGGATC s rn2.chr12 14650307 228 - 46874691 TTACACAGAGAGGATTA-------------GTCTATCCC---TGGGGCCAGG-TCTAAGGAAGGCAGGCACTTTTCTCCACGTGGGTCTTGCTTTGTGTTGAGgctggggatttactgagccctgtgcatgctaagcatgtgctgtatcaatgggcCCCAAGACATACATCTCAGTGTGTTTTGGCT-GAGGGGCTGTAC-CTCCAAGGTGTG---CTGGTAGATGGATCTGTTCTAGGAGTGAAGGATC a score=86195.000000 s hg15.chr12_random 520681 875 + 590431 AGAAAGCTTCCACTTCCACCCACCACCTAGGGGGATTC--CGGCTTAAGTCCTGGGCCCCTCCAGCAACC--CCATTC---AACTCC-ATGTAGAATAGAGTGAGGA--GACACAGGAGAGAAATCGTGGAATGAGGTAGAGACCCAGAACACTGG-GCCTGCTGTTTGCCTAGGAAGGCATagcgcatagcccctagacagagaaaccaggtgtgtggatttgagct----gtgtcactgt---ctagctgtgtggcctcagacacgtggttgtgcctctttaagcctcagtttcctcatctacaaaatggggcagtctccacctagcagATCTC--TCACGAGCTCTGATGTAA--CTGCTTtgcagatgagcaccaaggaaccacgtttgtggagtga---gggaacgttctagagc--------tggcctgtagtgacggttgcacagctgtatacacttcataaaacccatcagcctgtacatgtaaagtgagtgaattttatgac-atggc-------tcagtacagctgttaAAGACTGGGGTAAGCCCCAGCTCCCCGGAGACCTGCTGTGCACAGTGGCATCCATTGCTATTATGAACCAACACCCTCTCTTATCA---CCTGACAGATTGACCTCATCGATGGCAAAGGCAGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGGTGACTTTGTGGTGGAATACCACGGGGACCTCATCGAGATCACCGACGCCAAGAAACGGGAGGCTCTGTACGCACAGGACCCTTCCACGGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGGTGAGTCCACTGTTGCTTAGAGTGGCTTTTCTGTCCTCTGGGCAGTGAGGAGAGGCCAAAGGGCCAGGAACTCCTGATTCTGTTTGGTGGCC s mm3.chr5 121819481 794 + 149719773 AAAAGCCTTTTCTCTGAACTTATAACCTA----GACTCTCAGACGT-AGTCCTGGGCCCCTGGAGCAGCCATCCATTCTGTAACTCC-ATTTGT---------------ATCACCAGAAGTTATTGGTGGATCccag--gtggttcaggacactgggccttgcttgtccctcaataag---------------------cagagaacct-----tatggaccagagttcccagtgtcaccatttcctagctttgtggccttggacacatggc--tgcctttctaagcctcatttttctcatttgcaaaatggtgt-ttgcccacttagcaggtttcagctgggagc-ctgacgtaagagaaCTTTG--AATGGGCATAGAGCAGCTC--TTTGTGGTATGGACTGGGAAAAACCTGAGACTAAACCCAGAACACACAGTAAAGGCTCTGAAGCCATCCTCAGTTCA------------------------------AGTGGGTTTTATTTT-ATTGAGGTCCAGTCAGTAAAATTAGCAAAAAGTGTAGT----CCAAGCCTCTTGAAAGAC-ACTGTGCCTCTTGACACCTGTCATAATATTGAACC--CATGCTGTCTTGTCCCTCCCTGACAGATTGATCTAATTGATGGCAAAGGCAGGGGTGTGATCGCTACCAAGCAGTTCTCCAGGGGAGACTTTGTGGTAGAATACCATGGGGACCTCATTGAAATCACTGATGCCAAGAAGCGGGAGGCTCTGTACGCACAGGACCCCTCCACTGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGGTGAGTACACACT--------GTGACTTTTTAACTCTTTGGGTA--CAGGAAAGGCAGA--------------------CAACTGGGTGCCc s rn2.chr12 14650727 760 - 46874691 aacaaCCTTTTCTTTCCACCTATAACCGA----GACTC--AAACTT-AGTCCTGGGCCCTTGGAGCAGCCATCTATTCTGTAACTCCCATGTGTGAGAGAGTGAAGAGAAATACCAGAAGTTATTGGTGGATCACAG--GAAGTGCAGGACACTGG-CCTTGCTCATCACCCAGTGAG---------------------CAGAGACCCT-----TATGGACCAGAGTCCCCGATGTCACCATTTCCTagcttcatggcctt-------------------tctaagcctcatttttctcatctgcaaaatggtgt-ttgcctacttagcagatttCAGCTGGGAGC-CAGACTTAC---AACTTTG------GGCAGAGTGGAGCTC--TTAGTGGGATGGAGTGGGTATGGCCTGAGAC-----ATAGTGCACACAGTAAAAGCTATGAAGCCA----CGGTGCT------------------------------GGTGGGTTTTATTTTTATTGATGTCCAGCCAGTAAAATTGGCAAAAAGTATGGT----TCAAGCCCCTTGGAAGGC-ATCACGCCTGTTGACACCACTCATATTTTTGAAGC--CATGTTGTCTTGTCCCTTCCTGACAGATTGATCTAATCGATGGCAAAGGCAGGGGTGTGATTGCTACCAAGCGATTCTCCCGGGGAGACTTTGTGGTAGAATACCATGGAGACCTCATTGAAATCACCGATGCCAAGAAGCGGGAGGCTCTGTATGCACAGGACCCCTCCACGGGCTGCTACATGTACTATTTTCAATATCTGAGCAAAACCTACTGGTGAGTACGAGGT--------GTG---------------GGGTG--GGGGAAAGGCAGA--------------------CAGCCGGATGCCC a score=12924.000000 s hg15.chr12_random 522507 179 + 590431 TCCCATTTTTAATCTTTGGAATTGGAGCTGTCCTGGATGTTATCTCATCCAAGGGGAGAAGTGGGCTAGTCACATGAAAACCTGTTAAGCAGCTCA-CCTGGCTCTCCTTCAGGGCATTTGGCCA--GAGCAGCTCTGGAAATCACTAATTGATCTTGCCTGGCTAGGACCAGTGGAGTTGA s mm3.chr5 121820425 152 + 149719773 TCCC---TGTTAGCTGTGGGAT-GGAGCTGTCCT----------TCAGC-------AGGAGTGTGC--ATCCCCTAGACACCTGCT---CCAGCCA-AGCCCCTTTCCCTCTGGGCATTTGTCCA---AAGAGCTCTGTGCAATGGTAGCTGCTCCTTCCTGGTTGAGGTCAGGGGAGCCGA s rn2.chr12 14651648 157 - 46874691 TCA-----GTTAGCTTTGGGATTGGAGCTCTCCT----------TCAGC-------AGGAGAGGACTCAACCCCTAGAAACCTGCT---CTGGTCACAAGCCCTTTCCCTCTGGGCATTTGTCTGCAGAGGAGCTCTGCAGAATGGTAATTGCTCCTTCCTGGTTGAGGTCAGGAGAGCCCA a score=2733.000000 s hg15.chr12_random 523009 111 + 590431 TTTTTAATCCATTTATTTTGTGAAACTCTACCATTTCCTCCTGTGCCTCCATAAAGAGCCCTTTGGGTCCTACCCCATCCCCCCACCCAG-GGCCTGTGCAGGCTCTCAAAA s mm3.chr5 121820577 61 + 149719773 TTTTTAT-------------------------AGTTACTCCCTCGTCTCCGTAGAGAGTTCTTTGG-------------------------GGCCTCT-CTGGCTTTTAAAG s rn2.chr12 14651805 108 - 46874691 TTTGTATCCGTTGATGTGTTTGAAAC---ACTAGCTACTTCCTGGACTCCAGAGAGAGTTCTTGGGATTCTGTTCCCAGGCTCTGCATGCAGGCCTTT-CTGGCTTTAAAAG a score=324880.000000 s hg15.chr12_random 523741 2048 + 590431 TAGCTTTATGAATTGAA-TCTTTTCAAAACACATGGCTTTAAATCA-GCATCCCACCAGAGCT--------------------------------------GAGCACAAGTGTGACTCTCTTCAGGTTGA---------------------------------AAAGCCTCTTTATCCATTTAATCCTCTCTGGCCCTCCTTCCCCTCCAGCGTGGATGCAACTAGAGAGACAAATCGCCTAGGAAGACTGATCAATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGACATCGACGGCGTACCTCACCTCATCCTCATCGCCTCCCGAGACATCGCGGCTGGGGAGGAGCTCCTGTATGACTATGGGGACCGCAGCAAGGCTTCCATTGAAGCCCACCCGTGGCTGAAGCATTAACCGGTGGGCCCCGTGCCCTCCCCGCC------CCACTTTCCCTTCTTCAAAGGACAAAGTGCCCTCAAAGGGAATTGAATTTTTTTT------------------------------------------------TTACACACTTAATCTTAGCGGATTACTTC-AGATGTTTTTAAAAAGTATATT-AAGATGCCTTTTCACTGTAGTATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTAGTTGTTTTTGTACTTTTTTTGCATACAAGCCGAACGTTTGTGCTTCCCGTGCATGCAGTCAAAGACTCAGCACAGGTTTTAGAGGAAATAGTCAAACATGAACTAGGAAGCCAGGTGAGTCTCCTTTCTCCAGTGGAAGAGCCGGGACCTTCCCCCTGCACCCCCGACATCCAGGGACGGGGTGTGAGGAAGACGCTGCC-TCCCAATG----GCCTGGACGGGATGTTTCCAAGCTCTTGTTCCCCT-AACGTCTCAACAGGCG--CTCACTGAAGTGTATGAATATTTTTTAAAAAGGTTTTTGCAGTAAGCTAGTCTTCCCCTCTGCTTTCTCGAAAGCTTACTGAGCCCTGGGCCCCAAGCACGGGCCGGGCATAGATTTCCTCTTCCACAAGC-TGCCGCTTTTCTGGGCACCTTGAAGCATCAGGGCGTGAAATCAAACTAGATGTGGGCAGGGAGAGG-GTTGCTTACCTGCCCTGCTGGGGCAGGGTTTCCTGAAACTGGGTTAATTCTTTATAGAAATGTGAACACTGAATTTATTTTAaaaaataataataaaaa----------tttaaaaaaa-ttaaaa--------------ataaaaaAAACCACAGAAAACAACTTTACATGTATATAGGTCTTGAAGTGAGTGAAGTGGCTGCtttttttttttttttt-----------ttttgcttttt----------tttgctttttGTAGAAGAGATTGAGAATGGTAC-----TCTAATCAAAAATAAAGTTTTGTAGTGGGACCAGAAATTACTTACCTGACATCCACCCCCATTCCCCCTCATCCTGCTGGGGTTGAAAGTTCCAGACCTGCTGTCGAGGCCTTGTGTTTGTCAGACACCCAGTGTCCTCCTGCAAGGACGCAACTGTGAGCTGAGGTGTGAGCCTAGGAGCCCAGGACCCCTGACCCCGGCCGCTGCTGCCAGCCTCAGAAAGGCACCCAGGTGTGCAGGGGAGCACACAGGGCCCGGCAGCCCCCAGGA-------------ATCAAGGATAGGGCTAAGGTTTTCACCTTAACTGTGAAGGCAGGAGGAATAGGTGACTGCTTCCTCCCGCCCTTCACAGAACTGATTCTCACACACTGTCCCTTCAGTCCA-GGGGGCCGGGGCTCAGGAGCCATGACCTGGTGTCTCCTGCCCACCCTGGTCCCAGGTAAATGTGAATGGAGACAGGTATGAGAGGCTGTCCTCGTCTTTGATTCCCCCCCAACCCCACCT-CGGGCCTCACGACGGTGCTACCTAAGAAAGTCTTCCCTCCCACCCCCCGCTAGCCTGGTCAGTGGTCAGCAAATTGGAAGAGGATCCGATGGGA--GTGTAAATGTGAGAC-ACAATGTCTTGATTATACCTGTTTGTGGTTTAGCTTTGTATTTAAAC------------------AAGGAAATAAACTTGAAAATTATTTGTCATCATAAAAATGAAAC----AAATTAAAATATTTATTGCCAGGCAAGGCCACGTGTGTGTCT--TTCTGTTTTTAC--------------AAT------------TTGACTGTGTCACACCAG s mm3.chr5 121820638 1986 + 149719773 TAGCCTCTGGGATTAACCTGTCTTC--------------CAAGTGAGGCATGCCAGCCAAGTT----------------------------------------------------------------------------------------------------AGAGCCTCTTTATCAGTGTGATCCCCTCTCATTCTCCCACCTCACCAGCGTGGATGCCACTCAAGAAACGAACCGCCTAGGGAGACTCATCAATCACAGTAAGTGTGGGAACTGCCAGACCAAACTGCACGACATCGACGGCGTGCCTCACCTCATCCTCATCGCCTCCCGAGACATCGCAGCTGGGGAGGAGCTCCTGTACGACTATGGGGACCGAAGCAAGGCCTCCATCGAAGCCTACCCCTGGCTGAAGCACTAACCA--------CGTGgcctccctgcctccctgccaccctgcctccTTCAAAGGACAAAGTGCCCTCAAAGGGAAATGAATTTTTTTT-----------TacacacacacacgcacacacacacacatacacacacactcacactcacTCTTAGCTAATTACTTCTAAATGTTTTTAAAAAGTATATTAAAGATGCCTTTTCA-TGTAGTATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTAGTTGTTTTTGTAC-CTTTTTGCATACAAGCTGAACGTTTGTGCTTCCCG----CGCAGTGTAAGACTCGGCACAGGTTTTAGAGAATGGAGTTGAACATGAACTAGGAAGCCGGG--------CTCTGCCCAAGATGAAAGCCAGGAC---TCCCCCACACCCC--ACGTCCAAGGACAGGCCGGTGTGAGGGCGCTGCC-CCCCCACGCACAGCCTGGACGGGATGTCTCCAAGCTCTTGTTCTCCTCAGCATCCTGACAGGCGTACACACTGTCGTGTATGAATATTTTTTAGCAAAAGTTTCACAGTAAGCTAGTCTTCCCCTCTGCTTTCTCCAAAGCTTACTGAGCCCGGGGCTGGGAGGCCCGGCCAGGAACAGA---CCTCTTCCACAGGCTTACGGCTTTTCCAGGCACCTTGAAGCATCAGGGTGGACAGTCAGATTAGAGGCGGGCCGGGAAAAGCACTGTTCTCCTGCTCAAGAAGGGCA-GGTCTCCTGAAACTGCATTAATTCTTTATAGAAATGTGAACACTGAATTTATTTTaaaaaataat-----aaaaacaaaacattttaaaaaaa-tcaaaaaaagaaaaaatgg-aaaaaaaaaCCCACAGAAAACAACTTAACGTGTATATAGGTTTTGAAGGGAGTGAAATGAATGCGGTTTTCTTTTCTTCTGGGGTTTATTTTTTTTCTTTTTGGCTTGGCTGGTTGGTTTGTGTAGAGAAGATTTGAGATGGTACTCTATTCTAATCAAAAGTGAGGTTTTGTAGTGGGACCAGAAATTACTAAGCCCACACCCCCTCCC--TAACCCCAATTCTGCT-GCATGGGAAGTTCTCCACCTGCTGCCAAGG------------CAGAGCTCC--TGGTCTCCCATGAAGATG---CTGTCAGC-----TGTCAGTCTAGCACCCCGGAGCATCAGGCACCAGACG-TGCTT-------------GGCACTAGGGT-------------------ACCTGGCAGCCGGCAGAG-------------AACCAGGATGATGCTTCGGTTTTGAC-----CTGTGAGAGCAAGAG---TAGGTGGCTTCCTTCTCCCTCCCTGGGGAGGACTCA---CCATTCA-----CCTTCAGTCCA-GGGGCCTGGGGTTCAGGAGC----------------------------------------------------CAGGTATAAGACCCTACCCTCG--------TCCCCTACACCCCCATCTCCCAGGCTCATGATGGTGCTACCTACGAAAGTCTCCCC-CGCACCCTCTGCTAGCCCAGTCAGTGGTCAG--ACTTGGAGGAGGATCCGACAGGAGGGTGTAACTGTGAGATAAAAATGTCTTGGTTGTACCTGTTTGTGGCTTAGCTTTGTATTTAAATAGCAAACAAACAAAAAAAAAGGAAATAAACTTGAAACTTATTTGTCATCTTAAGAATAAAGCaaaaaaattaaaatatttattGCCAGGCAAGGCCACCTATGTGT----TGTTGTTGTTAATAAAGTGGAGGTGGAAT-AAGGGGAAAGAATAACTGATTCACCCTAt s rn2.chr12 14651913 2097 - 46874691 TAGCCTCTGGAATTAAC-TGTCTCC--------------CAAGTGAGGCCTCCCAGCCAGGTTCAAAGCCtcttttttttttttctcggagctggggaccgaacccagggccttgcgcttcctaggcaagcgctctaccactgagctaaatccccaaccccTCAAAGCCTCTTTATCAGTGTAATCCCCTC--ACTCTCCCACTATGCCAGCGTGGATGCCACTCAAGAAACGAACCGCCTGGGGAGACTGATCAATCACAGTAAGTGTGGGAATTGCCAGACCAAACTGCATGACATCGACGGCGTGCCTCACCTCATCCTCATAGCCTCCCGAGACATTGCGGCCGGGGAGGAGCTCCTGTACGACTATGGAGACCGGAGCAAGGCCTCCATCGAAGCCTACCCTTGGCTGAAGCACTAACCA----ACCATGTGgcctccctgcctccctgccaccctgcctccTTCAAAGGACAAAGTGCCCTCAAAGGGAAATGAATTTTTTacacacacacacacacacacacacacacacacacacacacacacacacacactcacactcacTCTTAGCTAATTACTTC-AAATGTTTTTAAAAAGTATATTAAAGATGCCTTTTCA-TGTAGTATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTAGTTGTTTTTCTAC-CTTTTTGCATACAAGCTGAACATTTGTGCTTCCCG----CGCAGTGTAAGACTCGGCACAGGTTTTAGAGAATGGAGTTGAACATGAACTAGGAAGCCGGG--------CTCTGCCCAAGATGAAAGCCAGGAC---TCCCCCGCACCCC--ACGTCCGAGGACAGGCCGGTGTGAGGGTGCTGCCACCCCCACGCACAGCCTGGACGGGATGTCTCCAAGCTCTTGTTCTCCTCAACGTCTTGACAGGTGTACACATTGACGTGTATGAATATTTTTTAGCAAAAGTTTCACAGTAAGCTAGTCTTCCCCTCTGCTTTCTCCAAAGCTTACTGAGCCCGGGGCTCGGAGGCCCGGCCAGGAACAGA---CCTCTTCCACAGGCTTACGGCTTTTCCAGGCACCTTGAAGCATCAGGGTGGGCAGTCAGACTAGAGGCGGGCCGGGAAAAGCACTGTTCTCCTGCCCAAGAAGGGCA-GGTCTCCTGAAACTGCATTAATTCTTTATAGAAATGTGAACACTGAATTTATTTTaaaaaataataataaaaaaacaaaatagtaaaaaaaaatttaaaaagaaaaaaaatggaaaaaaaaaaCCCACAGAAAACAACTTAACATGTATATAGGTTTTGAAGGGAGTGAAATGAATGCAGTTTTCTTTTCTTCTGGGGTTTA---TTTTTCTTTTTGGCTTGGCTGGTTGGTTTGTGTAGAGAAGATTTGAGATGGTACTCTATTCTAATCAAAAGTGAGG-TTTGTAGTGGGACCAGAAATTACTAAGCCCACACCCCCTCCC--CAACCCCAATTCTGCT-ACGTGGGAAGTTCTCTACCTGCTGTCAAGG------------CAGAACCCC--TGGTCTCCCGTGAAGATG---CCGTCAGT------------------CCTGTGGGCATCAGACACCAGATG-TGTTT-------------GGCTCTAGGGT-------------------ACCTGGCAGCCCGCAAGGCTTAGCAGCCAGAGATCAGGAGGATCCTTCAGTTGTAAC-----CTGTGATAGCAAGAG---TA---GGCTTCCTTCTCCCTCCTTGGGGAGGACTAA---CCATTCA-----CCTTCAGTCCAGGGGGCCTGGGGTTCAGGAGC----------------------------------------------------CAGGTGTAAGAGCCTACCCTTG--------TCCCCAGTACCTCCATCTCCCAGCCTCATGATGGTGCTACCTAAGAAAGTCTTCCC-CGCACCCTTTGCTAGCCCAGTCAGTGGTCAG--ACTTGGAGGAGGATCCGACAGGAGGGTGTAACTGTGAGAT-AAAATGTCTTGGTTGTACCTGTTTGTGGCTTAGCTTTGTATTTAAATAGCAAAC------AAAAAAAGGAAATAAACTTGAAACTTATTTGTCATCTTAAAAATAAAGCAAAAAAATTAAAGTATTTATTTCCAGGCAAGGGCACCTATGTATGTGGTGTTGTTCTTAGTAAAGTGGAAGTGGGATAAAGGGGGAAAGTTGACTGGTTCGCCCTCT a score=4941.000000 s hg15.chr12_random 526533 75 + 590431 taaaagttaatg-catt-ttgagccttagaacaatgg----cacatagtaagcatcataaact--------ttagctGATGTAATTGTC s mm3.chr5 121822805 79 + 149719773 GGAAGGTTAGGG-TATA-TAGGACCTCTGGGTAATGGGCAACGTGTAATATATACCCTAAATG--------TTAGCTGCTATAATTGTC s rn2.chr12 14654301 88 - 46874691 GGAAGGTTGGGGATGTATTACTACCTCTGGGTAATGGTCAACATGTAACGTATATCCTAAGTGGTAGCTACTTAACTGCCATGATTGT- a score=48792.000000 s hg15.chr12_random 531724 617 + 590431 CACATATACCATGTGTACCATCGTAACTAAGAGACCACTCTAGATAAGCTATAGAAAGTATAAAAATCATTTTACTTTAATACAAA-ATCACATAAAGAAA-GGCATGTTGGCTAAATCAAATATTCACTAAATATCAGTGAAGTCACCACTGGAATCTCAATAGCACATTTTCCTGCTTTCTTTTC--TCCCTTCTGCTAACCATTGAAGACCAGGGTCATCCGTGGGAGCAGATGAGTAGGACACGCGTCTGCACACTGGAGGCCCTGGGGGTTGACATGGGAGCAGGAAGTGGACCCCC-CCACCCTGCACATCCCTTCTGTTTTTCTTGATTTCAG-------TCTCACTGGCCCAGGCCAAATCTTCAAGGGTGTCTAGTTCTGCAGCCAGGGAGAAAGTGATGCCAAGAGAA----CCTCGTCTCCTCCCTCCTCAGTCT--GCTTTG---AAGGGGAAATAAATACACAGGCCTAGTGTGTCTGTGTGGCACAGGGAGGTGGTTTTGCCAGGCATCTTGGAAGGTTGTCTTCTAGAATC---AGAGCCATAGCCTTACTTGTGGCCTTGGATCTAGGTCTGTTTCCCCGATCGAAAAAAGAACCTGGTGTG---GAGAGAGAGAGGGTTCAGGGTAA s mm3.chr5 121823523 571 + 149719773 CATATACACCATCTTTATTATT----TTAAGAAAC-----------AGTAATAGACATTATAAAAGTCTTTTCACTTTAATACAAACATTGTATAAAGAAAAGTTGAATGAGAGAGATCAAGTATTCATCAAATATCAGTCAAGGCGAT-----------GATTCCATATGTTCCTGCTTTTCCATC--GCTCC-CGGCCACGTGCTAAGGACCAGA--TAATCACGGAGGCAG-------GAACG---AGCCACAGGCCAGAGGCCTCTG-----TCCATGTGTGGAGGAGGCGGGATGCAGCCACACACTCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTGGCCCTCATTTGGCCTGGCCAAAGCTTACTGACTGTCCAGGTCTGTCCCCAGAGAGCAGGTGA-GCCATGGGAGGGAGCAT---------CTTCCTCTGACT--GCTCTGTGCAGGAGCAAGCCAAGGCACA-------------TTCCTGACACAGGAAGGTGGTTCCAGAAGGCATATTGGCA-ATTGTCTTCTCAAGTCAAGAGGGTCACCATCTTGGTGATGGTTTTCAGTCTAGGTATGCTTCCCTGACCGGAAAGAGAACCT-GTGTGACAGAAAGAGTGAGAGAGCATGGTAA s rn2.chr12 14655818 532 - 46874691 CATACACACCATATTAACT-CT----TTAAGAGACCAGTCTGA--AAGTAATAGAAACTCTAAAGGTCTTTTCATTTTAATACAAAAGTCATATAAAGAAA-GTTGAGTGAGAGAAATCAAGTATTCACCAAATATCAGTAAAAGCGAT--------------TCCATACTTTCCTACTTTTCCATCTTGCTCT----------------GACCGGA--TTACCGCTGAGGCAG-------GAACA---ATCTGCGGGCCAGAGGCCTCTG-----TCCATGAGTGGAGG-------------CCACGCTCAGTGTTCCTTTGCTTTCTCAAGTTCCTGATCATG--CCTCACTTGTCCTGGCCAAAGCTTACTGCCTATCCAGTTCTGTCCCCGGGGAGCAGGTGA-GCCATGAGAG----CAT---------CTTCCTTTGACTTTGCTCTG---------AGGGCAAAGC----------------TCCAAAGCACAGAAAGATGGTTCCAGAAGACATATTGGCA-ATTATCTTCTCAAGTCGAGAGGGTCGCCATCTTGGCAATGGCCTTCAATCTAGGTGTGCTTCCCTGACCGGAAAGAGAACCT-GTGTGAAAGGAA-AGGAAGAGAGCATGGTAA a score=16070.000000 s hg15.chr12_random 533174 123 + 590431 ACACACATTTCACTTTTGCTCTATTAGGCTCAAACTCCAATTAGG----TGTCCTA---AGCTCCCGTAGAAGGACGCTGAAAGAAACCAGTAGTTTATGCCTTCTGGAAGCCTGATTTGCAACAAGACA s mm3.chr5 121825523 125 + 149719773 ACAGACATTTTACTTTTGCCATATTTGGCTCAAATGCCCATGAATTGGCTGGCTCAAAGAAGTCTCAAAG-GGGACGCTGAACGA----AATGGTTTCTGGCTTCTGGGGGCTTTGTTTAGACGGAGATA s rn2.chr12 14657564 125 - 46874691 ACAGACATTTGACTTTTGCCATATTTGGCTCAGATGCCTGTGAAT----TGGCTCAAAGAAGTCCCAAAG-GGGAGGCTGAGAGAAACCAATGGTTTCTGCCTTCTGGGGGCTTCTTTTAGACTGAGATA a score=35026.000000 s hg15.chr12_random 539203 360 + 590431 atatgccaagtgcctaggctactgcctggca--g-ataTCATTATAATACACTGGCATTGAGTTTTCCCATGGGCTGCAGCACCACAACC---GGGAGAGTAGAGGCCCTCCCTGCCCTGGGCAGCTGGTCAGCCTCTTCTTG-CCCCCGACTACTTCCTTGAGTTATTATTTGGCGGGACCGGGGGGCAGCAAGGTGACACTTACAGCTTTTTTATGATTGTCTTCTCCTCCTTGTTCCTGCCAGCATTTTTGGCACTAGTAACCACAGCATCTTTTTCTCTTCTTCCTCCTGGGCCTTCTCTTGGTGGAATCAGGCCACTGGGAAACGGGACAAAAAATAAATGGATTATTTTATTACAGATCGt s mm3.chr5 121829024 310 + 149719773 ATCTGTCCAATGCCCAGACTTCCTCCTGGTACCG-TTCCAGCTATAAAA---GGGCACGGAACTTTCCTACTGGCTGCA--ACCACATCCCAGGAGAGAGAAGA----------------------------ACCTCCCCTTCCCAACCCACAAGCTCTCATGCTCATGATGTAGCAGGG--------CATCCAGGTG--ACTCACAGCTTCTTCATAATGGTCCTCTCCTCCTTCTCGCCG---------TTGCCCATGGCAACCACAGCATCCTTCTCTCTTCTTCCTCCTGGAGTTTCTCTGGGTGGAAGTAGACCACTGGGGA----GACAGGAGGCGAGTCAATAGTTGTACTCCGTCTTGC s rn2.chr12 14659454 341 - 46874691 atttatccagtgcct-gacttcctcctggtattggttacagctatAAAATG-GGGCATAAGACTTTCCTACTGGCTGCA--ACCACATCCCAGGAGAGAGAAGACACTTACCAT-CCCAAGGCTGCC--TAAGCCTCCCCT---CAACCCACCACATCTCACGCTCATGACAGAGCAGGG-AGGGGAGCATCCAGGTG--ACTCACAGCTTCTTCATAATGGTCCTCTCCTCCTTCTCGCCG---------TTGCCCATGGTAACCATAGCGTCTTTCTCTCTTCTTCCTCCTGGAGTTTCTCTGGGTGGAAGGAGACCACTGGGAA----AATAGGAAGTGAATAAACAGTTGTGTTCCTTACTGC a score=41161.000000 s hg15.chr12_random 546858 177 + 590431 GGAGCCCACCTCTTGTAGCACTGCAGCTCTTCCTGCACCACCAGGAGCTGCGACTTGAGTTTGTTGCGTTCCTGCAGCACATCCCTTAGCTCCTGCAGAGTGAAGCGGGGTCGGTTGGGATCTGTCAGGTCAACCACCATTTTGTTTGGGCCCAGGTTCACCTGGAAGAAAAGACGC s mm3.chr5 121830288 177 + 149719773 GGAGCCCACCTCCTGTAGCACTGCAGTTCCTCCTGCACCAGCAGCAGCTGCGACTTGAGCTTGTTTCGCTCCTGCAGCACCTCCCTCAGCTCTTGCAGAGTGAAGCGGGGACGGTTGGGGTCTGTCAGATCCACTACCATCTTGTCCGGTCCCAAGTTTACCTGAAAGACAACATAC s rn2.chr12 14660498 177 - 46874691 GGAGCTCACCTCCTGTAGCACTGCAGTTCCTCCTGCACCAGCAGCAGCTGCGACTTGAGCTTGTTGCGTTCCTGCAGAACGTCCCTCAGCTCTTGCAGGGTAAAGCGGGGCCGGTTGGGGTCTGTCAGATCAACTACCATCTTGTCCGGTCCCAAGTTCACCTGAAAGACAACATAC a score=6481.000000 s hg15.chr12_random 548201 41 + 590431 tttaagatggtaa----attttatgttac-tgtattttactacaat------------- s mm3.chr5 121835128 59 + 149719773 GTTAAGATGGTGAATAGATTTCATGTTACACGTATTTGACTACAAGTAAAGATAATTTT s rn2.chr12 14664281 59 - 46874691 ATAAAGATGGTAAGCAGATTTCATGTTACATGCATTTGACTACAAGTGAAGATAATTTT a score=448.000000 s hg15.chr12_random 548556 20 + 590431 TTACTACAATTTAAAAAACC s mm3.chr5 121835188 20 + 149719773 TAAGTGCTTTTTAAAAACCA a score=6338.000000 s hg15.chr12_random 548889 73 + 590431 GGCATATTTTTGTAAACTGTCTAGTGGCACTAAACGTTCATTTTCTTAATTCATGCATTTTCCCTATCCCTGT s mm3.chr5 121835398 63 + 149719773 AAGATATTTTAATAAACTCTGT---------AAAAATCTATTCTTTTATTTTATGC-TTTTTCttttccttct s rn2.chr12 14664371 63 - 46874691 aacatattttaataaattaaGTG--------AAAAACCTATTCTTT-ATTTTATGC-TTTTTCTTTTCCTTCT a score=27404.000000 s hg15.chr12_random 548962 243 + 590431 -----------------------------TCTTAAGGCTGCGGTTTGAGAAGAAAATA-TGCCATCTCATCTGCCGCCTGATGAAACTTGTCCACTTTGCCCCATATGGGAAACTACCCAGCCCCTGTGCACACCACGCTGTTCTCGGCTCATAATGGGGACTTCCTCCATATCCTTGTGCCCGGAGAGGGAGGCAA--AAATAACACAGAATGTGGCTGAGCAATCCCCCGCAAGTCAG-----TTAACTTTCCTTGACTCTCAAAAGCCAGGCTACAA s mm3.chr5 121835577 270 + 149719773 TCCCCACCCTACTCCACACACACACCGCATCTTAAGACTGTATTTCAGGAAGAAAATA-TGCCACCTCATCTTGTGCCT-CTGACCCTTGTCCCCTCTGCCCTATGGGGGAAATCACCGGGCCCC-ATGCAAATCACTC--TTTTCAGACCACAATGCAG-CTTCCTCCATTGCCCTGTGCCTGAAGAGGGACCACACCAAACAGCAG-GAACGTGGCTGAGTAA-CCCGGGCAGCTCAA-CAG-TAAACCTTTCTTGCACCTCCAAGGCCAGGCTACGA s rn2.chr12 14664551 266 - 46874691 TGCCCACTCCACTCCTCACACACCCC--ATCTGAAGATTGTATTTAAGGAAGAAAAAAATGCCACCTCATCTTGCGCCT---GACACTTGTCCCCTCTGCCCCATGGGGGAAATCACAGGGCCCC-ATGCAAAGCACCT--TTTCCAGGCCATGATGCAA-CT---TCCATTTCCCTGTGCCTAACCACCAAACACTCCAAACGGCAC-GGATGTGCCTGAGTAA-CCCAGGCAGCTCAAGCAGTTAAACTTTTCTTGAATCTCCGAGGTCAGGCTATGG a score=111085.000000 s hg15.chr12_random 552466 855 + 590431 TCTCCGCAGCCCCTCCACCTCCTTCCTGAGGTGGTCCCTCTCCATCTTCAGCTCCTCCAGCGCCAGGCTGCCCTCATTCACCAGCGCCTCCAGCATCTCCAGGACGCGGACGACTTTGAACTGCAGCTGCGTCACCCGGGGGTCGCTGCCCAGGGCCATAAGCTCGCGGCCCAACAGGTAGGAGATGTCATACACGTCCTCGGCGGTCAGCTGGAAGGGGCTCTTGCCCAGCGCCCCCTCGGGCCCAAcctcgtccctctcctcgtcctcctctccctcctcctcttcctcttcTCGCACAGGGGGCTCCTCCATGGCCACCCAGACCCCCGCCGACCTCGGAGCTGCTGTCTTGGAGTCTCCCAAAGGTTAGACTTCCTCCCGGCACCCAAAACTTTCCGCTGGGCAGAGTCCCTACC-TGCCCAATCAGCGCGGCCCGGGGGTGGGCCCGGGGGGATGGTGCAAGGGGCCGCGCACGCGACTCTTGGGCCTGCGCCCCGGCGCACCGTCCCCGCTGCCAGCCACGCTGGAGAGTGCGCTCCAGGATGTGGTTTGGGGCGCG---AAGGGACAACGGAAAAGGAGGCAGCCGAGAAGAGGAACGGGGAAGTTCAGGGGTGACGGCAATCGCCCCAGCCTGGGAACAGTTGCAGCCCCGGGGAGGAGCCGCCCTGAGCCCCGCCCCTGGCGACCGCTGCCGGGAGGTGC---GTTTCCGTGGAGACGGAG------TTTCCACCGTGCAATCCAGAGC------GGG---------GTAAAAAGAACGCAACTTTTTC-----------------------------------CTTTCCACCCTCGTGCTTTCCAGCCGTAGAATTTGCATCGTAGGTGATGGAAGATCCGGGTGTCTCTTTGAGGGTGTTTTCTGGA s mm3.chr5 121838425 814 + 149719773 TTTCCGCAGCCCCTCCACCTCTTGCTTGAGGTTGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAGGCTGCCCTCGTTTACCAGCGTCTCCAGCATCTCCATCACACGTACTATCTTGAACTGCAGCCGGGTGACGCGGGGGTCGCTGCCCAGGGCCATCAGCTCGCGGCCCACTACATAGGAGATGTCGTACACGTCGTCGGTGGTCAGCTGCAGGGGGCTCTTGGCCAGGGCGC------------------------CCTCGTCTTCCTCGCCGTCCTCCTCCTCC------CGCACGGGGTGATCCTCCATGGTACCCCGGACTTCGGCGACCTCCGGGGCTGGTGGCACCTATGCGTCCACTGA---------CTCTGGGTCAGGGAAACTTTGCACTGGGCCGAGTCCACGCTGTGCGCAGTCTGGGCGG------------CCTTGGGGAATTGCGCCGAGTAGCGGG-----------TAGCACCGAACCATGGAAAACAGCCC------GCAGCTCCAC----GGCCGTGCACCAAAA----GTGAGGGACACGCACAGGGGACCGTGGGAAGGTAAGCAGGGAAGAAGGGGCTCGGAGAAGCAC-----------------CCGAGGCCTGG---TAGTC----TGCGAGGGAGGAGCCTCTCGAAGCTCCGCCCTTGGTGACGGACG-CGTGAGAAGCCTGGTTTCCATGGAAACGGGGGCGGACTTCCCAAGTGGTCATGGAAAGATGTTTTTGGTTTTTT---TAAAAAAGCTCATAAGCttttttttttttttttttttttttttttttttttttttAACTTTGCAAACTTAAGCTTTCCAGCTATTGAATTTGCATGGCATGGGAGGGGAAATCCAGGTCTCTATTGAAGGGTATTTTTTAAA s rn2.chr12 14667626 778 - 46874691 TCTCCGCAGCCCCTCCACCTCCTGCTTGAGGTTGTCCCTCTCCATCCTCAGCTCCTCGACCGCCAGGCTGCCCTCATTCACCAGCGCCTCCAGCATCTCCATCACACGTACGATCTTGAACTGCAGCCGGGTGACGCGGGGGTCGCTGCCCAGGGCCATCAGCTCGCGGCCCACCACATAGGAGATGTCGTACACGTCTTCGGTGGTCAGCTGCAGGGGGCTCTTGGCCAGGGCGC------------------------CCTCGTCTTCCTCGCCGTCCTCCTCTTCC------CGTACTGGGGGCTCCTCCATGGTACCCCGGACTTCTGCGACCTTCAGGGCTGCTGTCACCTACGCGTCCACGGG---------CTCTGGGTCAGGGAAACTTTTCTCTGGGCCGAGTCCACGCCGTGAGCAGTCTGTGTGGC-----------CCTTGGGGGGTGGCGCTGAGTAGCGGG-----------TACCACCGAACCATGGAAAGCCGCGC------GCAGCTACAC----AGCCGTGCGCCAAAA----GTGAGGGACACGCACAGGGGACTGTGGGAAGCAAAGCAGAGAGGAAGGGGCACCGAGGAGCAC-----------------CCAAGGCCTGG---TAGTC----CGCGAGGGAGGAGCCTCCCGTAGCTCCGCCCTTGGTGACGGGCG-CGTGAGAAGCCTGGTTTCCATGGAGACAGGGGCGGACTTCCCGGGGGGTCATGGAAAGA------TGGTATTTTAAAAAAAAAAGCTCACAAGTTTTTT----------------------------------ACTTTGCAAACTCGAGCTTTCCAGCTATCGAATTTGCATGGCAGGGGAGGGGAAATCCAGGTCTCTATTGAAGGGTATTTTTTTTA a score=3527.000000 s hg15.chr12_random 560083 84 + 590431 AATAAAGAGGTATGAATTTGATTAAACAGTTTATCTTGAATAACCT-AGACATGAGTCCACAGATGGCTTCTATGGT---TTCATAGG s mm3.chr6 120048421 87 - 149950539 AATTAAGCAACGTTAATCCGATTAAACAGTTTATCCTTAATAACCCGAGACATCAGTCCATGGATG-CTTCTGTGGTGATTTTACAGC a score=33155.000000 s hg15.chr12_random 560167 148 + 590431 TGTCTCTCATAGCTTCGGTGAGTTTGTCTTCTGACTTTCAGTCATGTGCTTCTAAACTCAACATGAAACTCCCTCTTCCCAGCTGCGCTTCTGACTGCCCTAACTTTTCAGACAAATCAAAGACCCAACCAGTGCTATAGTCTGCATT s mm3.chr1 10049425 148 + 195869683 TGTCTCTAGTAGCTTTGGCAAGTTTGTCTTCCGACTTGCGGTCATGTGTTTCTAAGCCCAACATGAAACTGCCACGTCCCAGTTGGGCTTCCGACTGCTCTAACTTCTCAGACAAATCAAACACCTGGCCTGTGGTGTAGTCTGCATT s rn2.chr5 180905599 148 - 191625135 TGTCTCTCGTAGCTTTGGCAAGTTTGTCTTCTGACTTGCGGTCATGTGTTTCTAAACCCAACATGAAACTCCCACGCCCCAGCTGGGCTTCCGACTGCTCTAACTTCTCAGACAGATCAAACACCTGGCCTGTGGTATAGTCAGCATT a score=24884.000000 s hg15.chr12_random 560316 111 + 590431 GTAAGCCTGCTCGAGGAACTCCGTGTATTCGCCCAGGATTTAGTCCACGAACGCTCAAGCAATTTGCAATCCAAAGAAGATTTGAAATATGAGACTTCTGAGGCATCAtat s mm3.chr1 10052921 111 + 195869683 GTAAGCAAGCTAGAGGAACTCAGGGTATTCACCCAGTATTTATTCCACAAAAGCTCAAGTAGTTTACGATCCAAAGATGATTTGAAATATGAGACTTCTAAGGCATAATAT s rn2.chr5 180909596 111 - 191625135 GTAAGCAAGCTAGAGGAACTCAGGGTGTTCACCCAGTATTTATTCCACAAGAGCTCAAGTAGTTTACGATCCAAAGAGGATTTGAAATATGAGACTTCTAAGGCATAATAT a score=18354.000000 s hg15.chr12_random 564891 180 + 590431 TGCTAAATGTTCCTTTGAGATTCTATTAGTGTGAAACTTCTGTAGAAATATCGGCCTTCCCTAGTGCCCTCCAGATCTCTTGCTTGGTTTGTAAAATGTTTTATAATAAATGTTTAGGTATATAGACTTAGCAGTCCT-----------------GGAGATGCACGTATCTGATTACCTTTCAAGAGGCTAACAGGg s mm3.chr1 12030450 192 - 195869683 TGCTAACATTAACACTGAGAGTCTATTAGCATGAAACTCCTCTAAAAAGAGCTGCCTTCCCTGCTGCCTG-TGGATCTT-TGCTTGGTTTGTAAAATGCTTTTTGCTAACTTTCTCATTTTACAGATCAGGAAGTCATCGTTTTCTACTCAGAGGGAGGGTATGG--GGAGGAAGAGTTATTGATA-GTTAACAAGG s rn2.chr13 20447599 192 - 105800825 TGCTGGCATCAACACTGAGAGTCCATTAGTGTGAAACTCCTACAGAAAGCGCTACCTTCCCTACTGCCCG-CAGATCTC-TGCGTGGTTTGCAGGATGCTTTATGCTAACTG--TCATTTTACAGACCTGGAAGTCATTGTTTTCTATTCAGAGGGAGGATATGGGTGGGGGGGAGGGTATTGATA-GTGAACTAGG a score=5703.000000 s hg15.chr12_random 566014 37 + 590431 taggatggctattatttaaa-gaaagaaaaaaaaaaaa s mm3.chr1 12030695 37 - 195869683 TAAGGTGACTATTGCTTAAG-AAAAAATAAAAGAAGAA s rn2.chr13 20447844 38 - 105800825 TACAGTGACTGTTGCTTAAGAAAAAAATAAAAGAAGAA a score=5909.000000 s hg15.chr12_random 577197 149 + 590431 TAACTGCATATTCGATAGTCTTT---CTTTCAACTTAG-------------TTGTTGAATTA---------GCAATTTTTCTCTTAAAAAAATTTTTTTTTAGCTTATTGTCTTCGGAGATGATAACACCCTCGTTGCGTGGG--------AGTAAAATTT-----TAAAGGTAA---AACAAACAGGAA s mm3.chr5 121843862 152 + 149719773 TAGCTACACATTCGGTAGT-------CCATCAATTTAAATTTTTTTGTC--ATGTAAAGCCAAATAAACAAACAA----------AAAGAAAT----------CTCATTATTCTCAAA----ATATACACTTCTGTATGTTGGACGTATATAGTCAATTTA-----TTTAAGTAATTCAAAAGACAGAAG s rn2.chr12 14673967 154 - 46874691 TAACTGCACATTCAGTAGTCTACCAACTATCAATTTAGTTTTTTTTTTTTAATGTAAAAACA-----------AA----------AAAAAAAT----------CTCCTTATCCTCAAA----ATATACACTTCTGTATGTT-GACTCATATAATCAATTTATTATTTTTAAGTAATGCAAAAGATGGAAG a score=40129.000000 s hg15.chr12_random 577352 468 + 590431 GTCGGCGGCGAATCTGCTGCTACCAATGTAAAGGTCAGGCCGAGGCCGGCGCGGAGAATCTGCTGTCGCCTGCAGCTGCTCG------------CCTGTCTCCGTCGGAAGGGAGCCCAAGCTTTGCAGAGGTGAGTGGAAG-CGGCTTGGAAGGAGCGGGCCCCACGCCGGAGAGAAGGAAGAGGGAGT------GCGGCCCAGACGCTGTGCC-CGCGCTTGTGTGG--GGCGCCATGTTGAAACCTGGCAAAGGGGACGACATTCTGGGTTGCGTTGCGGGGAGTGGGGACGAGAGCTGGATTGGAAGGATGGCCCCTTACTCCCTGCGGCCCCCAGAGAAGGAGAGG----------GGCGGGGAGCGGCCTCGAGGGTTGGC-------GGCCAGGCTGCAGGCTGGATGGGAAGGATAGGCTTTTCCACAGAAACTTAGGTGTTTGCCTCCGAGGC-CCACTGCGCATGCCCTGGAGGGCTCTGTGG-----GTTCCGCCTTCAGTT s mm3.chr5 121844024 480 + 149719773 GTC-GTGGCGAATCTGCTGCTGCCGATAAAGGGTTCCAGTGGAGGTCGGCGTGTGGAATCTGCAGTTTCTGGTAAACGGGCGGTGGAAACGGTTTTTCTCGCGGTGCGGAAAGAACCCCAAATTTGTCGAGGTGAGTGGAAGGAAGCCCGAAGGGAGCCGGGCCAAGGT----GAGAAGGCGGAGCGAGTCGCCCAACTGGCTTGGCGGGGTGCCACGTCGGCGCGTGGCCGACGCCATGTTGAAGCCTGGCAGAAA----------CCGGGCAgtgggagtgggagtgagactgagggttggggagccag------------------gcggccggggtgaggggcggggtgagggatgggatgagggACAGCCTTAGGGACAGCCCTGTCCAGGCGTAGTTGGAACCTGGGTACCGAGGAGCCGGCTTCACACCGACAGCTCCTCCTGGGCGTCCTCGGCGCCACTGCGCATGCCTGGGACGGTTGGGCAGTGGCGGTTTCGTCCTATGTT s rn2.chr12 14674286 442 - 46874691 GTC-GTGGCGAATCTGCTGCTGCCAATAAAGAGTTCCAGTGGAGGTCGGAGTAAGGAATCTGCAGCCTCTGGCAAACGGGCGGTGGAAACTACTTTTGTCTCCCTGTGGAAAGAACCCAACTTTTGCTGAGGTGAGTGGAAG----CTCGAAAGGGGCAGGGCCAACGC----AAGAAGGCGGAGAGAGTCCCCAAACAGGCCTGGCAGGGCGCCACGTCCGCGCGTGGCCGACGCCATGTTGAAGCCTGGCAGAGG----------CCGGG------AAGTGGGAGTGAGCCTGTGGGTTGGGTGGGAAG------------------GCGGCGCGGGTGAGTGGTGGGG----------------------------GAGCAGCCTTATCCTCGCGTAGCTGTAACCTGGGTACCGAGAGGCCAGCTTCACTCCGACAGTTCCGTCTTGGCTTCCTCAGCACCACTGCGCATGCCTGAAATGGTTTGGCAGTAGCTGTTTCTTTTTAGTTT a score=166687.000000 s hg15.chr12_random 584778 773 + 590431 TCTTATCA-T-TCATAGAACATGAACGATTGGATGCCCATCGCCAAGGAGTATGATCCACTCAAAGCGGGCAGCATTGATGGCACCGATGAAGACCCACACGACCGCGCGGTCTGGAGGGCAATGCTGGCACGATATGTCCCCAACAAAGGTGTCATAGGAGATCCCCTCCTCACCCTGTTTGTGGCCAGACTAAACTTGCAGACCAAGGAGGACAAATTAAAGGAAGTCTTTTCCCGCTATGGTGACATCCGGCGGCTTCGGCTGGTCAGGGACTTGGTCACAGGTTTTTCAAAGGGCTACGCCTTCATCGAATACAAGGAGGAGCGTGCCGTGATCAAAGCTTACCGAGATGCTGATGGCCTGGTTATTGACCAGCATGAGATATTTGTGGACTACGAGCTGGAAAGGACTCTCAAAGGGTGGATCCCTCGGCGACTTGGAGGCGGTCTTGGGGGAAAAAAGGAGTCTGGGCAACTGAGATTTGGGGGACGGGACCGGCCTTTTCGAAAACCTATTAACTTGCCAGTTGTTAAAAACGACCTCTATAGAGAGGGAAAACGGGAAAGGCGGGAGCGATCTCGATCCCGAGAAAGACACTGGGACTCGAGGACAAGGGATCGAGACCATGACAGGGGCCGGGAGAAGAGATGGCAAGAAAGAGAGCCGACCAGGGTGTGGCCCGACAATGACTGGGAGAGAGAGAGGGACTTCAGAGATGACAGGATCAAGGGGAGGGAGAAGAAGGAAAGAGGCAAGTAGAGGCCCAACAGCAG s mm3.chr5 121851014 766 + 149719773 TCCTATCA-TGTTCTAGAGCATGAGCGACTGGATGCCCATTGCCAAGGAATATGACCCGCTTAAAGCTGGCAGCATCGATGGTACAGATGAAGACCCACATGACCGAGCTGTGTGGAGGGCCATGCTGGCCCGCTATGTCCCCAACAAAGGAGTCACCGGAGACCCCCTCCTTACCCTGTTTGTGGCACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAAAGGAAGTCTTCTCCCGGTATGGTGACATTCGGCGGCTGAGGCTGGTTCGGGACCTGGTGACAGGCTTCTCCAAGGGCTACGCCTTCATTGAGTACAAGGAGGAGAGGGCCCTGATGAAGGCCTACAGAGATGCTGATGGCCTGGTCATTGACCAGCACGAGATATTCGTGGACTATGAGCTAGAGAGGACTCTCCGTGGCTGGATCCCTCGGCGGCTGGGTGGCGGATTGGGTGGGAAAAAGGAATCTGGGCAGCTGAGGTTCGGTGGGCGAGATCGGCCTTTCCGAAAACCCATTAACTTGCCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAAAGGGAAAGGAGGGAGCGATCTCGATCTAGGGACAGACACTGGGACCCCAGGCCCAGGGAACGGGATCATGACAGGGGCCGAGAGAAGCACTGGCAAGAGAG------GGCCAGGGTGTGGCCTGAGAATGATTGGGAAAGAGAGAGGGAGTTCAGGGAGGAGAGGGTCAAAAGCCGGGACAAGAGGGACAGAAGTAAGTAGAG--GCAGCAGCAG s rn2.chr12 14680970 767 - 46874691 TTCTGTTACTGTTGTAGAACATGAGCGACTGGATGCCCATTGCCAAGGAATATGACCCGCTTAAAGCTGGCAGCATCGATGGTACAGATGAAGACCCACATGACCGGGCTGTGTGGAGGGCCATGCTGGCCCGCTATGTCCCCAACAAAGGAGTCACCGGAGACCCTCTCCTTACCCTGTTTGTAGCACGACTGAACTTGCAGACCAAAGAGGAGAAGTTAAAGGAAGTCTTCTCCCGATATGGAGACATCCGACGGCTACGGCTGGTTCGGGACCTGGTGACAGGCTTCTCCAAGGGCTATGCCTTCATTGAGTACAAGGAGGAGAGGGCCCTGCTGAAGGCCTACAGAGATGCTGATGGACTGGTCATTGACCAGCATGAGATATTTGTGGACTATGAGCTAGAGAGGACCCTCCGTGGCTGGATCCCTCGGCGTCTGGGTGGTGGGTTGGGTGGGAAAAAGGAATCTGGGCAACTGAGGTTTGGTGGCCGGGATCGACCTTTCCGAAAACCCATCAACTTGCCAGTTGTCAAGAATGAGCCGCATAGAGAAGGGAAAAGGGAAAGGAGGGAGCGATCTCGATCCAGGGACAGACACTGGGATCCCAGGCCCAGGGAACGGGACCATGATAGGGGCCGAGAGAAGCACTGGCAAGACAG------GGCCAGGGTGTGGCCTGAGAATGATTGGGAAAGAGAGAGGGAGTTCAGGGACGAGAGGGCCAAAACCAGGGACAAGAGGGACAGAAGTAAGTAGAG--CCAGCAGCAG a score=24782.000000 s hg15.chr12_random 586352 246 + 590431 GAATAAATTGTATCTTTTCTATCTTTATATCCATAGCCCAAGAGTTTGCTGAATTGAAATAAAAATGGGATAGAAAAGT-GAATTCAAGGAGAATG--TCCAGAGCCCTAATACCAGAAGGCAGTCTGCACAGCCAGGTCAGCA--------TTCTTGAACAAATGCACTTCCATTCTCACTCAAAATGCCGACTGCCTTTCTTCTTTTTCTGACTGACATTTAAAATTAAAAACCAAAGTTGCTGGGCTGTGATCT s mm3.chr5 121852230 233 + 149719773 GGATATATTG--TCTTTTCCATTTTCATGTTTGTAGCCCCAGGGTTTGCTAAAT----------------TAGAAAGGTCAAATCCAAGGAGAGTG-CTCCAGCTCTTAATAACTAGACAACAGGTTGAGCATCTGGCTCAGCAGGCCGCTGCTGTCAAGTC--TGTA-GCCTGCTCCCTGAAAAAGTGCTGATGGCCAGCCTTC-TTCCCACACTGGCATTTCAAATGAAACA-TGGCCTTGCAGGGCTGTGATCT s rn2.chr12 14682377 251 - 46874691 GCATACATTG--TCTTTTGCATTTTCATGTTTGTAGCCCCAGGGTTTGCTGAATTGAAA-GAAAAGAGCCTAGAAAGGCCAAATCCAAGGAGAATGTTTCCAGCTCTTAATAACTCGACAGCAGGTTGAACATCTGGGTCAGCAGGCAGCTGCTGTCAAGTCCGTGTA-ACCCACTCCCAGAAAGAATGCCAGCTGCCAGCCTTC-TTTCAAGACAGCCATGTAAAACAAAAAG-CATTCTTGCAGGGCTGTGATCC