##maf version=1 scoring=multiz a score=6233.000000 s hg15.chr13_random 8343 109 + 414659 aacatt----------------------------------aaaatataaactctatgcagagaattctacctgctttgtacactgatatgatttccaacatctgacatacagtaggtattcaattaattctattgTCTCAAAg s mm3.chr5 23514772 88 + 149719773 AACAAA----------------------------------AAGATTCAAGATTTATGTAG--------------TTAGTCTACTGATAAGACTTCAAAT-TTTGTCATATAATATTCATTTAATAAATAC------CCCCAAG s rn2.chr4 179446573 122 - 183307734 AAAGAATACCCATCAATCTTTGTGTTTAACATCAAGAATTAAGAGCCAGGATTTATCTAG--------------TTTGTCTACTGATAAGAGTTCAAAT-TTTGTCATACAGTATGCATTTAATAAATAC------CTCCAAA a score=17334.000000 s hg15.chr13_random 8579 149 + 414659 CTATGAAATAAAATGTAATGGAACAGAAATAATTATCGCTTCATTTCTGAATCAGTTGAAAATAAATAACCGCCCCAAAAATGAGCAAACCTACAGTAATCCTCTT---------------TAACTCATATTGGATTTTAGGTTACTATTAAAATATTTTGCTa s mm3.chr5 23514860 146 + 149719773 TGATAAAACATGAT----TA-----AAAATGATTATGGCTTTATTTCTGAGTAAAATGAAAATAATCA-----CTCCAAAATAAACACACCAAATGTAGTCATCTTGGAAATAAACA----TAAATTGTGTTATATTTAATGTTGCTATTAAAACTCTTTGTTA s rn2.chr4 179446695 151 - 183307734 TGATAAAATACAAT----TGG----AAAATGATTATGGTTTTATTTCTCAGTCAAATGAAAATAATCA-----CTCCAACATAAAAACACTAAATGTAATTATCTTGGAAATAAACAAAGATAATTTGTGTTATATTTAATGTTGCTATTAAAATTCTTGGTTA a score=83790.000000 s hg15.chr13_random 9014 941 + 414659 TTCAGCTGGAAAAACCTTATATTTACTTTGATTAA-GAAAATGTTTTTAAACCAATACTTTATGATGCACACTGGTGAATATGAAGTTATACCTGAAGTAATATTAAATGACAGCTTTTCCATTTCTAGAATGTATGCATCAACTACCTTAACTTAAACATGGTATTATCCAAGCTCACAGTATCTGAGAAGGTTTGTGTCATTATCTAGCAAACTAAAGTCAAGCCCTCTGTAGTTCCCCACCTGTGATCTTCAAAGATATGGTGCTCCTTGAGATTTCTGTAAGGTAGGTCTGTTCTAAAATGTGTGAAAGGAAGAGAACCCGAAAAGGCAAGGTCTAAGAAGATCACTCAT---TTGGAGATGGCAAGGGTCACATCGGGGTTATCTAAGTCAGTGTGATTTACCCTTTGGTAAATCATACACATATTTCAAAAGTTACTTTATATGCTGTAATTCTTGCACTAAT-TTCATGGAAAATAAATTAGTATTACCTCGACTATCATCCATATCACCATCCCTTGAATGTTCTGATTGGATGTCTGGAGGGGTCTGAAGGACGGCCACGCTATTCTGATTTATAATCTTCAATTTCAGTTTTGGTTTTGACAGTTTTCTTCTTGGAACTGTAACTGTGAGGCTCTGTAACTGAGTCATCCCTGATTCAATCAAACACACATCATCCTGGGTATAAGTCTTGGGTGGGTCTAAAATTACAAAATCCCAAGAATACAAATTTAAACTTTCATTTTAAATT---TGA----CTGATTACTGTTCCAAAATACCCATGTCAAGGGAATGTGACTGTAGTTCTAGAAAACAATTATGTATCTATGAAATGCATGAATAATTAACTTCATGATACCCAATAAAAACTAGGAACAATAGGTCAAACTTCCTTGGATTATGGGCAGAAATGTTACATGTTTTTAAA-AAA-----TGGTCTTCCTGa s mm3.chr5 23515015 694 + 149719773 TTCAGATAGAAAAACC-TAT-TCTATTCCGATCAAAGAAAATGTTTATAAATCAACAGTTTACAAAGT-----------------------------------TTAGAGGATGGCTT------------------------------------------ATG----------------------CTGACAAA--------------TCAGCAAACTGAAAAGAATCGCTCTGAATGACCTACCTTATAAGCTACACAATCATACTGCTCTTAGAGATTTC--AATCACAA-GTCATTCCA-----TATGAGAAAATATGCATACACAA-------ATCTAAGAA-------CAC---TCAGAG-----AGGAA----------------------------------------------------------------------------------------------GTGTCCCAAGAAAATTAATGAGCATTACCTCGACTATCATCCATTTCACCATCTCTTGAATGTTCTGACTGGATGTCTGGAGGGGTCTGAAGGACAGCCACACTATTCTGATTTATAATCTTCAATTTCAGTTTTGGTTTTGTGCGTTTTCTCCTGGGAGCTGTGACTGTGAGGCTCTGTAGCTGACTCATCCCTGACTCGGTCAGACACACACCATCCTGGGTGTAGGTCTTAGGGGGGTCTAAGATTACAAA--CCCAAGGACACACATTGAAGCTTTCATTTTAAACTGACTGATAAGTTGATTAATATTCCAAAATCTACACGGCAAAAAGATACAACTATATACTTATTCAGCAAT----TATCTACAAAATGCACAAA--------CTGAAGATGTTCAGT-GACACTGAAAACACTGAT---AACTTTTTAGGACTACAG---GAA----TGTATGTTAACAAA-AAAGGGGGTGGGTTTACTGA s rn2.chr4 179446855 778 - 183307734 TTCAGATAGAAAAGTC-TAT-TCTGTTCTGATCAA-GAAAATATTTATAAATTACCAATTTACAAAGT-----------------------------------TTAGAGGAGGGCTT------------------------------------------ATG----------------------CTGAAAAA--------------TAAGCAAGT------AAATCGCTCTGAATGACCTTTCTCATAAGCTTCAGAAACATAATGCTCTTAGAGACTTC--AAAGACAAAGTGATCCCA-----TACAAGGAAACATGCACCCA----------ATCTAAGG--------CATGTTTCAGAG-----AAGTATCCCACAGCAGCTACTGTAAGCAGTGTGACAAACCCTT--AACAAACATGTGC---CACCAGGAGTTATCTCATACACTG--ACCCTTGCATGTGTGTCCAAGGAAAATTAAGAAGCTTTACCTCGACTATCGTCCATTTCTCCGTCTCTTGAGTGTTCTGACTGGATATCTGGAGGGGTCTGAAGAACAGCCACACTATTCTGATTTATAATCTTCAATTTCAGTTTTGGTTTTGTGCGTTTTCTCCTGGGAGCTGTGACTGTGAGGCTCTGTAGCTGACTCATCCCTGACTCGGTCAGACACACACCGTCCTGGGTGTAGGTCTTAGGTGGGTCTAAGATTACAAA--CCCAAGGACACACACTGAAGCTTTCATTTTAACCTGAGTGATAAGTTTATTAATATTCTAAGATCTACATGGCAAAAAGATACAATTATAGATCTACTCAGCAAT----TACCCACAAAATGCACAAA--------CTGAAGATGTTCAGT-AACAATGAAAACACTGAT---AACTTTTTAGGACTACAGGCAGAA----TGTATGCTAACAAAGAAACAGGGTGGGCTCTCTGA a score=76614.000000 s hg15.chr13_random 10244 950 + 414659 GTCTTCCTGGCATTTCTTTTTTCATGTC-------------------------------------CCAAT--------------------AAAAAGAGTT--------------------------------------AGAAGCACTGCAAATAAATGCAATGCT-CAGCTAATC-CACTATGAGCTTTTTCCTGGAAAAGATCAAAAGGCAGGGATCTATTTACACAAGAGGAGAGAGAATACTCCAGAAGCTCATCTGGAAAAATCAGAGTATCAACATAATTACTAACAGGGAGAAGTA------ATAAA------------TAAGTACA-----------------------------------------------------------------------AATCCTGCAGATTTAATTTTAAACATACAAAACTGTTGTTCCTTAGAACAATTCCTGTACTATCCAAATGTTTTTGTATCAGGTGCTATTAAATAC-----AAGTAT-----T--CAAAAGAATGACTGTTTAATAAGAATATCATATTAATCACCATACTAGGCttattaattattttaaaaaattaaGCGAT-TGAATTAATTCTAAAAGAAATCTGCTTGCTAACTAGGCCGTATTT-TCTGCTAACTGATAATTAAGCACAGTAATATA-TCAA-TGAAACCAAAGCAAGTATGGCATTAATGGTT-ATTCTAAGAGCTGTTATTTTTATTGCCAACTTGCTGAAATTTATAGGAATACTGCCCCAGTAAAGCTGG---AT---GACATTTTATATATC-ATTGTGGAAATGATTACCAACATTATGGAATTTGGATAGAACACCCATATGATTGAAGCAGATTTTAGAAGTGGTAAGCCAATTATGTAAAAATTAAGCAAAGTAAATTAATTAAATTAAGTAAAGCATTTCAAATTTTACCTAGCTTTTTTACTTTTGTGACAATTTGTGCTACAAGTGAAGATCCACAGCAGTCTGAGGAAGGCACTGAAATGAAAAAAAAAAAAAATCCAGGTAATTCTTTTCAGAAAAGGTAAAGTGTATTTACATACTTATATATGATTAAAATTTCTGTTTCTATACTCATTTTATTAAAATAAATGTTTGAACACTAAAG-------------------------------------------------------------------------------------------------------------TTAAAAGCACTTTTT s mm3.chr5 23515709 1036 + 149719773 -------AAGCATCTTGGCTTCCATGA--------------------------------------ACATG--------------------GGAAGAAGAT--------------------------------------------CCTGGAGCTAAAGCTGCTGCTGCAGCCACTCAAATAATAAGCTTTCTCCCAGTGAAGTCCAAAACG------------TAAATAAGAGAAATGAATATACTTCAGAAGCCCATTTGGAAAACC---AGTATCAATTTGACCACCTACAAAGAGTGTTAAACACTGTAAAAACCTGCATCCTTAAGTACAATGATATACATGTATTCAAACCCATTAATACACTGTTTTGTGTTCTAGCTTAAAATACTAATAAGATCATAAATTCTGAAGAT--AACTTTTAATGTG-AAAAC--TTGTTTATTAAAATAATTTCAATATAATCCAAATGTTTTTATATCC---------AAATATTGTAAAAATAT-----TGGTTAAAGGATAAATCTATCAT-AAAATGTCAT----GTCATCATTCTAAG-TTATCAG-----AGAACAAATTGTAAAATATTAATTAGTACTAAATGAGTGCT--TAGTTAAACAGGCTTTCTTTTTCTCCTTACTGACAACTAAGCA-AGCACAATACCCAGCTGAAGTGAAGGCAAGCAAGATACTAACAGTTAATCCAAAGAGCTATTATTTTCATT----ATTTCCTGAAACTTATAGGAATACTACTTCATCAAAATGGG---ATATGAACATTTTATATATTAATTCTTGA------TATTAACATCAGACAATTCACTTA--------ATTTAATTTAAGCA-------------TCAAGTCAGTTGTTTAAGAATTAAA---------------------AGAAAAACATTTCCAATTTTACCTAGCTCTTTCACTTTTGTGACGATCTGTGCCACAAGAGAAGAGTCGCAGCAGTCTGAGGAAGGCACTGAACAGAAAAAGAACCAA---TCAGGAAAT--GTTTGAGAAAAAA--------------AGACTTATACAGAATT-AATTTTCAGTTGCTGTACATGTATCATT-CAACAAATGTATGAATACAACAGGATGTTAGTTCTTAATGCGGGGCGGGGAGGTGGGGAGAGCGTTTGTGTATGCCAACCAAATAGTGTACCCAGGTGCTCCATCCCAACCCCAAAAGCAGCTCTTAGTTTTTCAAAGGCATTATTT s rn2.chr4 179447633 1122 - 183307734 -------AAGACCCCCAGCTTCCATGACTTATGGTTACTTATGGTAGGAAGAAGACCCCCGGCTTCCATGACTTATGGTTACTTATGGTAGGAAGAAGATCCCCGGCTTCCATGACTTATGGTTGCTTATGGTAGAAAGAAGACCCTAGAGCTACAGGTGCTAC--CAACCACTCACGTAATAAGGTTTCT-CTAGTGAAGACCAAAATT----------------TAAGAGAAACAAATGTACTTCAGAAGCCCATTTGCAACACC---AGTATCACTGTGACCACCTACCAAAAGTGGCAGACACTATAAAAACCTGCATCCTTAAGTACAATGATGTACATGTATTCAAACCCATGA-----------TGTATGCTAGCTTAAAATACTAGTAAGAT----ATTTATCAATAT-----CTTTAATGTG-AAAAC--TTGTTTATAAAAACAATTTCAATATAATCCAAATG-TTTTATATCAG--------AAATATTTTCAAAATATAATACTGGTTAAAGGATAAATCTATCATAAAAATGCCAT----CTTACCATTCCAAG-TTATGAA----CAAAAAAAATTGCAAGATATTAATTAATACTAAATGGGTTGT--TACATTAACAATCTCTCTTTATCTCCTTACTGACAACTAAGCA-AACACAATA-CCAGCTGAAGCAAAGGCAAGCATGATACTAACACTTAATCCAAAGAGCTATTACACTGATT----ATTTTTGGAAATTTATAGGAATACTGTTTCATCAAAATGGGATAATATGAACATATCATTCATTAATTCTTGA------AACTAACATCAGACAATTCACTTA--------ATTTCATTTAAGCA-------------TTGAGTCAGTTATTTAAGAATTAAAT-------ATTTGT--GTTTTCAAAAGTCATTTCCAATTTTACCTAGCTCTTTTACTTTTGTGACGATCTGTGCCACAAGAGAAGAGTCGCAGCAGTCTGAGGAAGGCACTGAACAGAAAAAGAACCAA---TCAGGAAAT--GTCTGAGAAAGAG--------------AGACTTGCACAGGATTAAAATTTCAGTGGCTATACACATATCATT-CAACAAGTGTGTGAATACTATAAGATATTAATTCTTAA-----------GGGGTGGGGGGAGC--TTGTATATGCCAATCAAATACTATACCCATGTCCTCCATCCCAATCCCAAAGGCAGCTTTTAGTTTTTCAAAGGCATTATTT a score=16569.000000 s hg15.chr13_random 11194 219 + 414659 AAAGCAACAACAAAACAAGAAGTGATGAAGGAAATACTCAAGTCATGGAGGAAAACCTGGCTAAGAAAGAATCAACACATTGGA-TTTTGACATATTGTCAATAACTACAAGATCATGTTCCTTGGAAGCAAAATTATAGTTTACATCTAA--AGTATATGCTTTTTATTGTTTCA-TGTAAATTGTTTTATAACAAGTTGTGATAAGTCATGTAT---------AACCAAC---------- s mm3.chr5 23516906 208 + 149719773 AAAACAAGAACAAAACAAGGAGCACTGA-------------------GAAGAAAACC-AGCAGAGACTGAATGGG------GGA-TTTCTAAATA----CAATAA-TCCAAGAGGTTAAACCTTGAGAGCAAAATTATATTTTACATCTAATTTGCATATGC--TTCATTTTTTCATTATACAACCATTTAAATAAAGTTTGGATAGGAAGTATATTATAGTACAAAACAACTTCttttttt s rn2.chr4 179448917 205 - 183307734 AAAACAAGAACAAAACAAGGAGCATAGA-------------------GAAGAACACC-AGCAGAGACTGAATGGG------GGATTTTCTGGGTA----TAATAA-TCCAAGAGGTTAAGCCTTGAGAATAAA--TTTATTTTACATCTAATTTGCATATGC---TCACTTCTTCAATATACAACCATCTTAATAAAGTTTGCATAGGAAGTATATTA-AGTACAAAACAATTTCTATTTCT a score=97952.000000 s hg15.chr13_random 11508 982 + 414659 CAAG----------------------AGAGTGGTACAAGAGTGCA--GACTCACAGTTTAAATTATTCTGTTACCATTAGATGCAGGCATATAGGGTCTGCACATGTTACAATCAAAACCAATGTCTGCTACATTTTCCACTTCTTCCTCAGTATTTAAGTTCTGACGAACTGCATGCATCCATCTAAAA------AGACCATATTTGTACATTTTTTTTAAAAAATGGAATATACTGAGAACTGCTACCTTTTAAAACCTGTAACACTG------AGTCTTCAAACTTAAAAGCCCTAAGCCTCACATGCTCCTCCTACCTTGCCCTTTTCTCCTAACTATCCCTAGTAA--CAGAAAAACTTTCATAGAGCTAAGGAGGAAATAAAAAGGAATGAGAACAACTATTAGA----GAGGAAGCA-AAGCACATTACATAAGGAAGCTA--ATTATTTTATCATCATATATTAAATATTTCAAAGACAGCAAGGAAGCTAGTTAGGGCAAACACAAAGGTATTCAGAAAACGGCAAATGGCAGTGCTAGCATATATGGGCTCCAGGC-AATGCATCTCACTTGAAGTAGACATATCTCATGGAAAGCGATGTTGAATGGTAATTGGGAAATAAAGTAAAAAGTTGTCTTGC--AATGGAACAAATAATTAG------TAGCCAGAGTCCCAAGAA--------TACTGTACTACTGATAAAATAATACTATCAATATATGTTCACTGCTTAACTTCTAAAGAGTACAACAATATACCAATGAAAGCAA-GGAAACATTCTTGATTTTGAAATTCCACATAATTACGTAGGGAGGGCAGAAGGTGCTATCTAATACCTAGATATCTAGTATCTAGAGCTTTA-AGAGAAAGTGGTTTAAGGAGAACAGAAAGTGTTAG----ATATTTTTATAATCAATTAAAAGATTCAGAAACCCTT-CATAAGAAACGGCATAGATGAAGGCAATAATTCTCCATCTAATTTCAAGGGATTCCTAAACCCTCAAAAAGGCCTAA--------ATTAAAAATCTTTAGT s mm3.chr5 23517445 930 + 149719773 aCAAAACAACTTCTATCTCACAAATCAAGGAGACACAGGGCAGCA-AAACTCACAGTTTATGTTACTATCTTACCATTAGACACAGGCATATAGGGTCTGCACATGCTACAATCAAAACCAATGTCTGCTACATTTTCCACTTCCTCCTCAGTATTTAAGTTTTGACAAACTGCATGCATCCACCTAAAA-----CAAAACACATTTACACA----TTTAAAAGAAGTGAGTATGCTTGAAACTGAACTCCTTTTAAAATCGTAACAGGAGATGACAGTCCTCAAACCT-AAAGCCCCAAGTCTCAAATGTCC-----------CCTTTTCCCCCTAACTATGACTATTAACCCACAAGATCCATCCTTGCTCTGATAAGTCAAGAAAAAGGAATGAGAATAAACACTAAG----GAGAAAGCATATGCATGCT--GTTAGGAGGACAGCATCCAATGGTGAGCAAATGCTGAAAG--ACAAAGATAGCAATGCAGCTAGTCAGATCAGGC----AAGAATACAGAAGAGTACAATTAAAATTGTGTGT--GTGAGAGTGCCACCC-ACTGCATCTACCGAGCAACAGATGTGCTGCATGTCAAG-GAAG-AGGACCTTGCTT-----------TAGAGCAGTTTGTAGCCGATTGCTACAAA-AACTACACAACTTACTTACA-----AATAA--------TCCTGCACCACCAATGAGTCAAAGGTGACACTGTACATTCAGTGCTAAACTGCT---------AACAATACTGATAGAAAAACAACAGAAGCAGTCTGCA-------------CAT-ACTAGTTAGGAAGATCAAG-----------------------------ATCTTAAGTTTTAGGGGCGAAATAG--TGAGAAAAAAGAAGAATGTAGGGAGAATATTTTTAGAATCTACCAAAAGACTGAGAAATTCTC-CACAAAAA--TGTGTATGTGCAAACACTAATTATGTATCTGATTTCAAGGGACTGATAAATCACCAAAAGACCCCCA--------ATTGAAAGCCTGAAGT s rn2.chr4 179449102 966 - 183307734 ACAAAACAATTTCTATTTCTCAAGTCAAGGAGATGCAGAGCAGCATGACCTCATGGCCTATGTTACTCTCTTACCATTTGACACAGGCATATAGGGTCTGCACATGCTACAGTCAAAACCAATGTCTGCTACATTTTCCACTTCCTCCTCAGTATTTAAGTTTTGACAAACTGCATGCATCCACCTAAAAAAAAACAAAACACTTTTACACA----TTTAAAAGAAGTGAGCATGCTAGAAACTGAACTCTTTTTAAAATCACAACAGGAGTTGACAGTCCGCAAACCT-AAAGCCCTAAGTCTCAAATGTCC-----------CCCTTCTCCCAAAACTATGACTATTAACCCACAAGATCCTTCCTTGTTCTGAGAGATCGAGAAAAAGGAATGAGAATAAACACTAAGTAAGGAGAAAACACAAGCATGCT--GTTAGGAGGACAATATCCAATAGTGATCAAAAGCTGAAAG--ACGAAGATAGCAATGAAGCAAGTCAGGTCAGGC----AAGAATATAGAAGACCACAGATGGCATTGTGTGTAGGTAAGTGGGCCACCTTGCTGCATCTAACTAGGAACCGATACGCTGCATGTCAAGTAAAG-AGGACCTTACTT-----------TAGAGAAATGTGTCGCT-AGTGCTACAGA-AACTAC----CTTATTCAGA-----AACACGGTTTTGTTTCTGAACCACCAAAGAATTAAAGCTAACACTGTACATTCAGTGCTAAACTGCT---------AACAGTACAGA---AAAAACAAAGGAATCAGTCTGCATTTTGAAGGTACACAT-ACTAGTTAGGAACATCGGA-----------------------------ATCTGGACTTTTAGAGGGGAAATGG--TGAGGAGAAAGAAGAGTGTAGAGAGAGCATTTTTAGAATCTACCAAAAGATTCAGAAATTCTCACATGAAAA--TGCATATATGCACGTACTAATTGTGCACCTAATTTTAAGAAACTGATAAACCATCAAAAGACCCCCCCTCCCCCCGTTGAAAACCTGAAGG a score=119617.000000 s hg15.chr13_random 12820 985 + 414659 GTCTGGAGTTGAGAATTCAAAACAGGAAATCAATTCTGTAAGATTCTAGGTGACTAAAAATCTACAAGGCAAAAAGTTCTGTACCTAAAACTTGTGATTAAGGAAAAGCTATTTTCCTTTTTTTTTTTTTTTTGCTACATTTCAAAGAGAAAAGCTTTAAAAAGATGAAAAAATAG---------CACAATATCTATCACATTGTCTACATTGCAGAATAAGATCTTCTTCTCTATAGTTTCAATAGCAGACTGGACAGGAAGATAAGCTTGCACAAGGAGCGCACTGTGTGTAATTGTTCTGCCATTCACATCTTAGACCTGCAGATGTTGCTCCACAGTGTCTGCACCAAACACACCTGAAATCCAAATCCCCCCGAAAAGTCTCCATTTTATTTTCTTAGTTATTCAGTAACTGTAATTCAGGAAGCTACATACGAACATAATGGGGCAAATGATTTAATGTGTATGTGAAAATTTTTCTGCTTAGTGGTATGTATCATAGAATATGTGTATTATTCAATTAAATAGGTATGGCTAATTTTTAAAAACTAAAGTGGTATGAGAAAGCTCTGAACTTGAAAGACTAACAAGGCAA-ACAAACCCTAGAGAACCATTTGCACTTCACTTCCAGCCTCCTTTGGGAACTGTCTGCAATGGAGGGTCTAGGCAGTAGGTGTGATAACTTATGTCACAATCATCACACAGCAGGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACAAACAGTGCACTCAAGACACCTCCAACCTTTGCTAAGAACCACTTTAGTGATCTGTAAAAGAAACAACCAATCCATGTGA----TTTATGCATTAACCTAACATAATCA-------------AATATACTATATAAATTAATATGGTGCTTATGTACCTAGAAGCAGAAAGGGGcaatcaacta---------------acatttattgagcac---------------ctacggaggcccaatactgggttgggcATG---TTCA--TACACGCTTTTAGGAGCCTA-CTGAGCAGAG s mm3.chr5 23518375 910 + 149719773 GTCtaaaatttaaaaatttaaataGTAAAGTAG-TCCGGAAGCTTCTAATAGACTAAAAATCTAGAAAGC--AAAGTTTTGTTCCCTAAATTTATAATCCAGCAAAGT-------AATTTTCTAAGGTTTGTTACTACCTTT----GAGAAACCTGCTTTAAAGATAGCAAAGGAGGTTAAGGGGCGCAGTACCTATCACACTGTCTACACTGCAGAATGAGGTCCTCTTCTCTGTAGTTCCGACAGCAGACAGGGCAGGAAGACAGGCTGGCACAAGGAGCACACTGTGTGTAATTGTTCTGCCATTCACATCTCAAACCTGCAGATGTTGCTCCACAGTGTCTGCACCAAACACACCTGAAACCCAAAGCCCA-GTGAAAGTATCAAGTTTATTTTCGT-ATTAAAGTGTAAA---AATCTGAGAAGCTACAAGTGCACAGAATGAG----------------------------------------------------------------------------AACAG------------------------------------AAGTTCAGAACTTGAAAGACTGACAAAGTAACATGAATCCTAGGGTACCATTTG-----CATTTCCAGCCTCCTTTGGGAACTGTCTGCAATGGAGGGTCTAGGCAGTAGGTATGATAGCTTATGTCACAGTCATCACATAGCAAGAGTCTTCCAGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCACTCAAGACATCTCCAACCTTTGCTAAGAACCACTTTAGTGATCTGGAAAAAGAAAATAAAACCCATGTGATTGCTTTATGTATTTAACTTAG--AATCATTTTTGTTTAACTAGAACATTGCATGAATTTCCACTGTGCGTGAatgcatacatgcatacatacatgcatacatacatgcatacatacatgcatgcatacaGAACAGGAGCAGGTAAACATTACTATGCCCAAATACTTAATAGGACAGACACCACATCTGCACACTTTTAGGCACCCACCTGATTAACA s rn2.chr4 179450068 820 - 183307734 GTCTAAAATT--GAAATTTTTATAGTAAAG-------------------------AAAAATCTAGAAAGC--AAAATTTTGTTTCCTAAATTTATGATCAAGGAAAAG-------ACTTTTCTAATTTCTTTTACTACATTT----GAGAAA--------AAAGCTAA------AGATTCAGGGCC-CAGTACCTATCACACTGTCTACACTGAAGAATGAGGTCCTCTTCTCTGTAGTTCCGACAGCAGACTGGGCAGGAGGACAGGCTGGCACACGGAGCACACTGTGTGTAATTGTTTTGCCATTCACATCTCAAGCCTGCAGATGTTGCTCCACAGTGTCTGCACCAAACACACCTGAAATCCAAAGCCCCCACAAAAGTATCAAGTTTATTTTCAT-GTTAAAGTGTAAA---AATTGGGGAAGCAACAAGAGCG--GAATGAG----------------------------------------------------------------------------AGCAG------------------------------------AAGTTTAGAATTTGAAAGACTGACAAAGTAACATGAGAGCTAGGGTACCATTTG-----CATTTCCAGCCTCCTTTGGGAACTGTCTGCAATGGAGGGTCTAGGCAGTAGGTATGATAGCTTATGTCACAGTCATCACACAGCAAGAGTCTTCCAGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCACTCAAGACATCTCCAACCTTTGCTAAGAACCACTTTAGTGATCTGGAAAAAGAAAACGAAATCCATGTGACTGCTTTATGTATTGAACTTAGA-AATCACTTTTGCTTTACTAGGACACTGCATGAATTACC-CTGTGT---------------------------------------------TATATACACACATGAAGATAAGGAGCAGGTAAACATCACTATGCTCAAACACTCACTGGGACAGG---CTCATCTGCACACATTTAGGAGCCCACCTGAACAACA a score=5916.000000 s hg15.chr13_random 13805 430 + 414659 TAATAGACAATGGCACATATTTTAATGCCTTTTTAAAGTCCACATAATTACCTTATGCTGTACATTTAATGTCCACTATATTTATAGATATAGTGACCAGATTTTAAAGAAATCAAGTAAGCTTC---ACTATTATTGATACATAATTGAAAATACATCAACAAAATCTCCATCTA---CATTTCCATGCTTAGAATCAA-------------------------------TAGAAAAAATACCAAAAAAAATTAATGTAAAGCATGAGTTCTT--------AGGG-------------------------ACATTTTATGATCTTAGAGGATTTCTATTTAGACTATGAAGCTAGGAATTCTGAAGTTCACATTCACCCCTCTGTTTATTCTCCCCTCTCTCAAGGGTATAAGTTAGCAGAATATTTGGGAATCTCCAAATCCCTAACAAACAACTGAAGGAAGCCACACCATGTAATATTAAGATTGCGGAA----------CTTCTT s mm3.chr5 23519285 463 + 149719773 TAAC-------------CATTTGAGT----------------CATACTT-CTCAATGCTTCAGATTTAAT-TCCATTATTTTTACACATATAATGATTGGATTTTAAAG---TTGAATAAGCTGCCCTACTACTATTGACA-GGATTTTAAACAACAGCAATGAAATCTTTATACATGGTATGTCTATGAATGGGATTAAATGCTTCTGGGTTACAGTATGGCTTTTCTACTAAATAAGCTACCAAACAGTTTCTCTGCAATCAATTGTTTCCCTACCAAAAAGGGGGGAAATTATCATAACAAAATACTAAAATTTTATGGTCCTTCAGGAAT----TTTAGGTCATAAGGCTGGCACTTACATAGCTCATCTTTACTCATTTATTT--------CTGTCTGAAAGACCTGAATCGGCAGGATTTTTGAGACTCTCTACATCCCTAATAAAATTCTCAAAGAAGCTATACCATGAAAAATTAATGTGAGGAAATAAACTTTTCCTTTTT a score=15968.000000 s hg15.chr13_random 14235 957 + 414659 AAAGATCTCAAAAGACTAGGATCCTCAGACAGAACCAATCAAGTGCCCACATTATAATGAAACAGCAA--GTAATGAGGGTACAGA---Ataaaaattcagatcatgaggtacatgaaagcctaaaagctaccagagaagaaaataaaagagttaaattcaaagga----acacccatcagaatg----------------------------------gcacaaaacttccca---actccagatgctagaaga-----gtataagtttccaattcta--caggaaaatacttttcaaagtacaattctcaacctagctacacaagcaactatgtgtgaagacagaatacgttgtagacacaggaagattcaaaattcagctccttcattctccttctaataaagttacttagagatatgcggaacagaatgaagatgtattacaaagaaaaggaagacttgggatctataaatcaacagatccaacaaaggacatcaggccagggaagtttaaggatg-----agaacaacacacccagaagccactggcacatatcagagcaggagaagggaatgtctagaaggagggtaggacttctcccagaaaaaaacagtactttaaaaaataatcttatatgatagt---tctatagtaggc-aaaaacaaagaac-------gaatggagagtcac-------tattactttcttgttattaaaaactccatgaaagacaaaagaaactcatagtatactgtttagatctgcagtgaacatttactgagtcataaccaacaccttattaattgaactaaacatagtaatacaactata-----ttgggagaaggaaggaggtgtattttaagacct--aaatcagaatttatttattcatagcagaaagtcaacaaaatctagcattgataaagcagtaa-accagttgattatttagagctatagcattaaccacaagaaaaaagacctgaaaagattaaaagtgattgcctcagatgtggaggtagagtaagacaagagt s mm3.chr5 23519888 925 + 149719773 ATCAACTTCAAAAGCATATATTTCCC---------------AGTGACAACAGAATAG-GAAACAGGAAAGGTATATAGAGAAAAGAACTATGAGATCTCAGATCATGAGGAATGAGAAAGCCTAAAAACTACT----GAGAAAGAAACAGAATTCATTTAAAAGGAATTGATGTCTATAAGAATGTCTTTATTTGTTGCAAAAGTACAAAGGTTCATAAGCACAAAACTTTCCATCTACCCCAAACGTTAAAATACAGTCGTACGA-TATCCATTCTTATGCAGACAACTACT-----AAGCATAATAGCTAACCTAGCTACGTGAGTCATTAAGTAAAAAGGCAGACTGTCAGTCACACACATGAGGA--AGAAATTTAGCTC------------------------AGCTAGAAATATATGGAATGGAGTAAGAATATGTTCCAAGAAAAGGG--------------------------------CAAAGGAC-TGTGTGCAGGCAAG-TTAAGGATGTGCAAGGGACCACATG-TCAGATGCTGTGGG--CAGATTAGAGCAAGGCAA-------TACAGAA---------CACTACCCC---AGGGAAATGGCATTTGAGAAATTAATCTGATAGGATGGTGTATGTGCAGTGGGCTAAAAACAAACAATAAAATAAGAATAGAGAGTTACTCATGATTATGGTCTTCTTGCTATTAAAAAC-CCAGAAAAGACAAAAG----CCACATTTCCTTACTTAGAATTACAGTGAACATTTTCTGCATGATAGCCAGTATTTTTCTGCATCAACTGTCCAGTGACACACTACCATAAAATGTAATAGGAAGGAAGGAATTATATACCTGAATTTACAAACCTGAATGTGATTATTCAGAGTAATGAGTCAGCAATGTCAGACACTGCTCAAGCTGTGACACCAGCTTACTACTTAGAACTAGAGAATGACCCACAAAATAAGACCCGTGAAAAGAGTAAA--TGAATGCTACAGATATAGAGCT-TAATAAGACTGAGGT a score=4966.000000 s hg15.chr13_random 15532 148 + 414659 tttgatttttaaacatgtatattcattattttgatTAGCTTATTGATT---TTTAAGAATTTGTCTTAGATTACCAAGT--TAGTATATTATTTGCCCAAATGAAGGAAATGGCCTGGGGTAAGATCAGGGTGGCTTAGAGcagtagccagca s mm3.chr5 23520813 143 + 149719773 TTTGATGTTTAAACACATCTCCTTATTACCTTGATTAACATATTAATTTCATCTAAA----TGTCTGAAATTACCAAATTATAATATATTATTTA-CCATATGAAG-----GGCCCAGAAGAAAAGCAGAGTGGAATAGTACAGTAAACTGCA a score=12092.000000 s hg15.chr13_random 17604 198 + 414659 TGGGTTAAAAGAAATACATTACTAC--CTTGAAAGGGATCTTATTCAATTTCCTTAGGTCCAAAACATTAAGTATTCTAAAAAACAAAATCTAATGATAGCAGCTACTTTTATACA---GAATATAAAGTACAAAGAAGAAAAGAAACATGTTTTATGCATATATAACTCCATTTTTAATTGGCTTTATATAC-TCTGTGTTTT s mm3.chr5 23522682 169 + 149719773 TGGGTTCATAAAACTTTACAATCACATCTTGAAAGGAATCATATTTGAT-TTCT-------------TCAATAGTTTTCTGGAGTCAAATCTCA-----------------ACACATTTGAATATGAAGACACATGAAGAAA--TAGTTTCTCCTATGCATGTATAACTTT-TTTTAAACTGGCATTAAATAA-TTTGGGATTT s rn2.chr4 179451164 154 - 183307734 TGAGTTCATAGAGTTTACTAATCACATCTTGAAGGGAATCATATCTAATATGCT-------------TCAATAGGTTTACGGAGTCAAATCTCA-----------------ACACA-----------------GTGAAGAAA--TAATTTATTTTATGCATGTATGACTTT-TTTAAAACTAGCGTTAAATAAATTTAGGATTT a score=30074.000000 s hg15.chr13_random 18417 428 + 414659 TGCATTAAATATG--ACACTTGTTTTGTTTCTTTTGGCTATAAGGAGAAAATGTCATTTTGTATATGAGTGAGCACAGAGGAGAGAGAATGCGGTAAAGAACAGAATAGGCTAATAATTTTTTACTAAATACTCCAGTTCTCAGCTTTTT---------AAATCAACAGAC-AAAATGAATCAGCTAAACCTAAAATCTTTGTGAATAGT------ATAAATTGTCTTTTAAATTAAATGCATATATTTTTATGTTTTACTTTTTCAAGACAAAAGCAGGATA-TTAGTACAATATAAGA---------TTTATAGAGGAGCAAATTTCTTCAGATAGGAAACCCTTAAAAGCAGTATTTAAAGTGCTTAAATACTGTCACATATGTTTAATA------------------------------ATCATA--------ATACTTAATTGTGAGAACTGGGA--GCTCATGTTACTACTAAAACCAAATAAAAATTCA- s mm3.chr5 23522865 427 + 149719773 TGCATGAAATATATAGTACTAACATTGTT--CTTTAGATATAAGGAGAAAA--------TGTATGTGAAGAAGGGCTGAGGAACCTAAATGTGGGAGAGACATGGGCAGTCACAC-----------GAATA---TAGTCA-------------------AGAACAACAGAATGAAGTAAAC----------TAACCTCTCAGTATATAATTATAAAATAAACTGT-TTTAAGAGTAAATATCTACATTTTA------TGCCTTTCCAATACACTGCCAGGATAATTTGCATAAATCAAGAACACAGATTTTT----AGGAACTAATTTATCGGAGT----AACACTTAGAAACAGTATTAAAAGTACTAAAATACTGCCACATATGCATAATAAGAACAAATACTTGATTTAAATATTGGCATATTATATATAATAGATAATTAGTCTTAAGAACTGAGAC-AACCATATTAGTGATAAAACAAAATAAAAACTCA- s rn2.chr4 179451332 436 - 183307734 TGTATTAAAAATA--GTACTTGCTTTGTT--TTTTAGATGTAAGGAGAAAA--------TGCTTGTGAGGAAGAGATGAGCAATCTAAATGTAGGCTAGACATGGACAGTCATACAA---ATGAATGAATA---CAGCCACTGACTGTTCTGTGGTCAAGGAAGAACAGAG-GAAGTAAACGGA-------CAACCTCTGAGTGAACAGTCATGGGATAAATTGT-TCTAAGAGTAAATATCTACATTTTAA-----TGCCTTTTCAATACAATGACAGGATACATTGCATAAATCAATTA--------TTC----AGGAAACAA----------------ACAGTTAAAAATAGTATTTAAAGTACTAAA-TACTGCTACATAAACATAATAGCAGCAAACGCTTGATTTAAATATTGTCATATTATATATAACAGATAATTAGTTTTAAGAACTGAGACAAACTGTATTACTGCTAAAACAAAATAAAAATTTAA a score=13574.000000 s hg15.chr13_random 18845 87 + 414659 GTACATA---TTTGTTAACT------------CAATTTA--------------AGGATGTTTACCTTAATACTGACACAGTATGGATGGTAACACTGACCACACTGAG-ACAGGCAA s mm3.chr5 23523761 116 + 149719773 GCACATAAG-TAAATAAATTCTTTATTAAAAATACTTTAACTCATTTAATCTAAGCACATTTACCTTAATACTGACACAGTATGGATGGTAACATTGACCACACTGTGAACAGGCAA s rn2.chr4 179452046 101 - 183307734 gcacaTAAACTGAATAAATT----ATTAAAAATACTTTG------------TTAACTCATTTACCTTAATACTGACACAATATGGATGGTAACACTGACCACACTGTGAACAGGCAA a score=5580.000000 s hg15.chr13_random 22591 52 + 414659 tgtacatgt--caaatatag----cttatatcaactatacctcaa-----------taagcctggtttt s mm3.chr5 23525628 66 + 149719773 TGCATGTGT--CAAATATATGTACCCTATATCAATTATGTCTCAA-AAGTCTATTTTGAGTTTGACTGt s rn2.chr4 179453902 68 - 183307734 TGAATATGTAACAAATCTCTGTA-CCTATACCAATTTTGTCTCAGTAAGTCTATTCTGAGTCTGACTGt a score=21389.000000 s hg15.chr13_random 22643 169 + 414659 aaa-------------aTTTTTCTTTTTGAAA-----AAAGGACGAGAATCTAAGCTTCCTTATTCCTGCTTTAGTAGTAAACTTGAACAA-TTTCACCTGTCTCCTATACTTAAAATGACATTTTAG----------------------------AATTTTAAAAACAGGATTTTAATAAAATAGCGAAGTTATTACGTAAAATATTTGCTAGTA s mm3.chr5 23525821 184 + 149719773 AAATAAATCAGTTTTCAATTTACTTCATATAAAACACAAAGGACCAGAATCCCAGTTTTCTTGGTTCTG-GTTAGTAGTAAAACTGAGTGA-TTTCA--TGCTTTTTGAACTTAAAATGGCATTTTAG---------------------------AAAGTGAAAAAACAGTATTTCAGTTAAATAATAAAGGTTCTA-ATAAAGTATTTGCCAATA s rn2.chr4 179454100 212 - 183307734 AAATAAATCAGCTTTCAATTTACTTCATATAAAACACAAAGGACCAGAATCCCAGTTTTCTTGTTTCTG-GTTAGTAGTAAAACTGGGTGATTTTTG--TGCTTTTTGAACTTAACATTGCATTTTAGaaacaaaacaaaacaaaacaaaaaacaaaaaaaaaaaacCAGAATTTCAGTTAAATAATAAAGGTTCTA-ATAAAATATTTGTCAACA a score=121167.000000 s hg15.chr13_random 22818 1200 + 414659 AAATATATTTGTAATACACAT----------ATAAATAAAGC-CTTATAACATGATAGTAAGCAAATAACAATCTTAAAATTTTTTAAGTAAAAG---AGCAACTATATTACATACTGACTTTTTAGAGAGGGGTGGCATA--GAAAGATAAGGAGTCAAAGAGGAAGGTAAGAATAGAGAAAGGATGAGAAAGTAAATATACAAGAAAACGTAACCAGAGGCTCAAAAAAAA-------------AGCAAAGTAGAACA--GTAAAA--TAAACATTTTGACCTATTTATATAACTCTTAAGTTCAAAATAACTTGCT----ATGAGATTGTCA----TCATTAACTGACATTTAGATTAGAGAAAATATACATGAAGGAAGCCTCACCCCAGGCAATACAACAGCTCCGATTCCACTTTTCAGCTTTGACCTGCCTCGGCCACCTCACCCCGACAGTCCTGCACCTCGAGGTCTCCGCTTTCCTGGAAATCCAGACCCACAGCCCTATGTAACA-GATTAAGAAAAGTCAACATTCTGTGACAGCCCAAAATAATTTTTAAATCCAA--ATGCCACTGAGATAAAACATTTTATTAAATGTTATACAAACACT----TCTTTA-----------GATAAGTATTAAGAGACCTGGCTTATTATTTTTATCTTTAAAA---GTATACTCCACAACTTAAAAATCTAAATATAAAATGCTTACAACCTTAG----AATCATACTTTCGGGCTGTCACTGTGAACG----CTATCAGCAAGACTTT-GCATGATTTTTCTCTTTCCCACTCCTACATTCTCAGTGACGACAACAACTATAGTCTGATCCAGATATTTCGAAGTGCAACAAATTGTATTCAATATAGA------GTAAGGATAAGGAAGAACTCTCTCATTAACTGGTCTCGCGGTGATTACagtaatagctaacatctattgagtacttactatgtactgatctaagtattttttactctcaacaatcccatatagtaggttttattatccttatttgagatgagtgtgctgaggaataaaatggttaagtaagttgtccaaggtcgcttagctagcaagcctggctccagcgtccctgggt-tggaaGCA-TATTCTGTACTGCTACATCAGCATAAAAGTTCATTTTTGCTAGTGTGTAACAGTATTCTTCCTGTCATTAAAATTAAGTCAGTTTCCTTCACTATTCAACAGTTCTCTTATGAACTCAACA-TTTCTACCTCA-TTCACCATTGTATTTA s mm3.chr5 23527616 1168 + 149719773 aaatatattC---ATATACAT--GAAATGAAATAAATATGACATTTAAAA------AGGAATCCaataatagtat-----atttttaattaaaaaaaaaGAAAACACACTAAAAATTCAC-TCTTGTAGAAGGTTTGCATATAAAAAGAT-----ATCAAAGAAGAAAG-----AAAGAG-AAGGAAGGTAAATCAGA-AAACGAAAGGACCTAAGCAGACTTCCAAAATAAAACACATTTTATCAAGCAGAG----ACACAGTAAGATGTAAAGGGATGAGACTACTCCTGGGACTCTTAGGATGGAAACAACTTGTTACAAATGAGAGTATCA----CCATTAATTGCTA-CTGGAATAATAAGAGCAAAA---------GTCTCACCCCAGGTAATACAACAGCTCCAATTCCACTCTTTAGTTTAGACCTGCCTCTGCCACCTCGTCCTGACAGCCCAGCACCACGAGGCCTCCGCTTTCCTGGAAATCCAGACCCTCGGCCCTGCATAACA-GAT--ACAGAAGTTAACATTTCATAAAAGCCCAAAAGAACTTTTAAATCCAGATATATCAGTGAAATAAAACATTTTATTAAGTATTACACAAATATTTATCTTTTTATATAATTAGATGATACATATTAATAGAGCAGACTTACTATTTCTATCTTATATA--TGTA---TCCATAATT------TAGAAATA-AAACTACTTAAAGCTTTAG----AATCA-GTGTTGCATCTATCACCATGAGTGCTTCCTATCAGCCGGCCTTTCCCACTATTTTTGACTTCCTTACTACTTTATTCTAGGTGTTTAGAGTAACTAT--CCTTACACAGACAT------GT---ACAGACTCTCTTCAGTACAAA------ATGGTTATCAAGAAAAACTATATC------------CTTGGAGAGGAGAgtaacag-gaacatttactgagcacttagcatgcattgatttgagcaatatttcttctcaacaaaccctca----gggtatc----tccactttaaggataattgttctgagg-gtaacaagtgtaagtgacttct-taaggtc-ctcagttagcaag--tggc-CCACCATCCTTGGTTGTTTATTCTTTATTCTGAAATATTACA-AGGTAGCAAAGTTTATTTTTACTTCTGTAAAGTGGCATTCTTCATATCATGAAAATGTGATCAGTACCCTTTATTATTCAATAGCTCTCACATGAATTGAACA-TATCTAATTCATTTTAACATAGTATTTA s rn2.chr4 179454834 1157 - 183307734 aaaaatactc---atatatataTGAAACGAAATAAATACAGC-TTTAAAA------AAAAATTCAGTAACAGTAT-----ATTTTTAATTAAAAG----GAAAATACACTAAAAATTCAT-CCTTGTA-AGGGTTGGCATA--AAAAGAT-----GTCAAAGAAGAAAG---GAAAAAAG-AAGGATAATAAATCAGA-AGACAAAAG-ACCTGGACAGACTTCCAAAATAAAGCAACTTTTATCTAGCACAG----ACA--GTAAAGTGTGAAGGGATGAGACTACCCCTGGGA-TCTTAGGGTGGAAACAACTTGTTGTAAATGAGAGCATCAATCACCACCGGTTGCTA-TGGGAATAAGAAGAACAGAC----------TCTCACCCCAGGTAACACAACAGCTCCGAGTCCACTTTTTAGTTTAGATCTGCCTCTGCCGCCTCGCCCTGACAGCCCAGCACCACGAGGCCTCCGCTTCCCCGGAAATCCAGACCCTCGGCCCTGCATAGCATAAC--AGACAAGTTAACATTTCATAAAAGCCCAAGAGAA-TTTTAAATCCAG--ATGTCAGTGAAATAAAACACTGTATTAAACGTTACACAAATATTTATCTTTTTATAGAATTAGATGATACATACTAATAGACCAG----ACTACTTCTATCTTCTATATTTGTA---CCCATAACTTAAAAATAAAAATA-AAACAACTTAAAGCTTTAGAATCAATCA-GTGCTCCCTCTGTCATGCTGAGTGCTTCCTACCAAGCACGCCTCAGCACTATTTCTGACTCCCTTTCATGTCTACTCTAGGTGTCTGGAGTCACTAT--CCTTATACAGACATTAACACAC---ACAGACTCTCTTCAGTACAAAGTAGGTGTAGCTATCAAGAAAAACTATCTT------------CTCGGAGACGAGGGAAACAG-------CTACCAGGCA-TTAGTGTGCACTGACCTGAGCAATATTTCCCCTCAACAAACCTT------AGGTGTC----TCCACTTT----------------AGg-gtaaaaagtgtcagtgactactccaaggtcactcagctagcaca--tggc-CCA-CATCCTTGGTT-TTTAGTCACTATTCTAAAATATTACA-AGGCAGCAAAGTTTCTTTTTGCTACTGTAAAGTGCTGTTCTTCATATCATGAAAATATAATCAGTATCCTTTATTATTCAATAGATCTCATATGAATTGAACATTATCTAACTCATTTTAACACAGTATTTA a score=40809.000000 s hg15.chr13_random 24208 621 + 414659 AAATTATTTGAGGATTACAGGAAAGCTGACAAAAGGCTTTGTGAAAGCTTTGCTTTAAATAATCTGAATAATAAATACTTGAAATGGAAATAATTTATC--TGACTT--CTTACACAAG---AAATAAACCTATGGGAAAATGTGTTAAATTCCCTGATAATTTCAGACATTAAGTACCAG--AGTATGGTGTTCCCTGCCCCCTCACCCTTGTTTGTACTA------ATTAATTACTCCTTGAAAAAAC-CTGGCACCTACCTAAGTAGATGAATTATGTATATTTAAAATT-ATCCAGATGC--TCAGGAAAATACTTAGGTGTT--TCCCTCACCATAAGTTAAATAATATGTCATATCTTCAACTGATGTCCCTTATC-ATAGTTTGAAATGAACTTATTCCCTATTTAGCAGAATGGTTTCCAAGTCAAAAATTTATGATGATACGGTAAGCAT-AAAATAGAAACACATGAACAAAAGGAACAGGAGGAATGGCTTTTTTCTCTTTGGATGTAATAAATACAGCCAGCTCCCAGTTTCAAACTGCCACTCCTGTCTTCTCTTACCCTGCTCT-------CCTTGAGATCCCTT----------------TTGAGAAG-------TGCATC-----AGCTTCTTTGCACA-------ACAGATGGATGGGGTCA-------------GGTTAGt s mm3.chr5 23528784 625 + 149719773 AAAGTACTTGAAGATCTTAATAAAATTGGCATAATG----ACAAAA---------TAATAAACCTTAAAAAT-AATGTTTGAAATGGGAATAACTTATCTATATCTTCACTAACATAAG---AAAAAGTCATTCAGGAAAATCTGCTAAAATTCCTGA-GATCTTAAGCTGTAGGCACCAACCAATA-----------------------TTGGTCATATTCAG----ATTTATTGCTGACTGGAAAAAAGTTTGCATCT-------TAG-------AAGCAACTTAAAAACTGACTTAGAAGAAGTCAGGAAAAAATTTTTTTC----TTCCTTATAACAGATGAAAAAGTATGCCACCTTTTCACCTGATGGCCTTCATCCATTTCATAAACTGAGCCCACTTCCTACTGAGTAGAACAGGCTCAGGGTCAAAACTCTATGTTTATGTCGGGAGACTAAAGACAT---CACATGAATAAAGGGAA----GGGACTTGGGCTTTCCCCTTCAGTTTAATTAAGTGCAAACACCTTCCAGCTCCAAGCTGCCTCTCCTTG-TATTCTCACCCTGTTCTTTGGGTCCCTTGAGAGTCCTTAGCTCTGAACAAAGGATAAACAGGGTAGGACTGCACTGGACAAGTTGCTTTCAATAGGAATACAAGGGTGGCTTGTGGCAAGGAGGATTATGGGGAA--- s rn2.chr4 179455991 599 - 183307734 AAAT--CTTAAAGATCTTAATAAAATGGGCACAAAG----GCAAAA---------TAATGAACCTTAAAAAT-AATGT-------------------TCACTATCTTCACTAGCATGAGAAAAAAAAGTCCTTAAGGAAAAGATGTTAAATTCCCTGA-GGTCTTAAGCTGTCGGCAACAACCAACATTA-GAACCCTGACC---CAACCTTGGTCACATTCAGAATTATGTATTACTGGCTGGAAAAAA-CTTGCACCT-------TAG-------AAGCATCTTAAAAACTGACTTAGAAGAAGTCAGGGAAATTTTTTTTTCTTTGTTCCTT-----AGATGAAAAAGTATGCCACATTTTTGCCTGGTGGCCTTCATCTACTTCCTAAACTGAACCCATTTCCTACCGAGCAGAACAGGCTCAGGGTCAAAGCACTATGTTTACGTTAGGAGACT-GAGACAT---CAGAGGGACAAAGGGAA----GGGACATGTGCTGTCCCCTTC----------AGTACAAACCCTTTCCTGCTCCAAGCT-----TCCAGG-TACTCTCACCCTGTTCTTTAGGCCCCTTGAGAGGCCTTGGCTCTTAACAAAGGATAGACAAGGTAGGACTGCACCAGACAAGCTGTTTTCAATAGGAATGAAAGGGTGGCTTATGGCA-------------GGAA--- a score=977.000000 s hg15.chr13_random 25144 24 + 414659 GAGTTTGTTTTGTTATT--AAATTGG s mm3.chr5 23529409 26 + 149719773 GAGTTAAAGGTATAATTAAAAATTAg s rn2.chr4 179456590 18 - 183307734 GAGT--------AAATTAAAAATTAG a score=13553.000000 s hg15.chr13_random 25202 101 + 414659 AAAAATCAAGACTACAGTAATCTCTCAATTTATTTTCTCAAACATGAAATGCTGACCCAGAAAAAAAGTAAGTAAAAATTGG---------------------------------TGGTCTATATTATCAAACT s mm3.chr5 23529638 131 + 149719773 AAAAATTAGGATTACAATAATCTCTTAGTTCATTTCCCCTAACATCCATAGGTA---CAGACTGATAGTAAGTGAAAATTGGCAGCATTTGCTACAAAAGCATTTTTTAAAATCATGGTTTATTTTCTTAAATT s rn2.chr4 179456599 130 - 183307734 AAAAATTAGGATGACACTGATCTCCCAGTTCATTTCCCCTAACACCCATTGGTA---CA-ACTAAAATCAAGTGAAAATTGGCCGCACTTGCTACAAAAGCATTTTTAAAAATCATGGTTTGTCCTCTTAAATA a score=248085.000000 s hg15.chr13_random 25303 2620 + 414659 GTCA-------------AATGAGGTATATTTATACCTCAATATCTTGGATGATATCAGGCGGAGGTAGGGAGGTTAAAAAAAATA-GTTCTTCCAGTCAAGAAAGAAAATA---AAATATAATCTAGAATTCCTTAAAA-TCCTTGATTAGTCTGAATTAAACAGCCATATTCCAGAA--TATTAAATATAGAATATGAAGAAAAACTGTCATCTCCGGTCAATGAAGTATTTTAACTTTTGAGTTAA-TACTTTTTCAAATTAATTTTTTTCTCTTCAAAATGCATCACACTACTTAACTCACTTGAAGGACTGGCAGAGC--CATCAACCAATGT-CATGAGGGAAAAAGCCTTGTCATTTTAAGGTATTAAACAGACAA--TGAAATCTGCCACAATTTTGGTATTTCTTGTCCATGAGAACATAATAAATTAATGGAGTTTTTTCTTTTGCTTTTTTCTAAGCAACAAAGTTTTATGATATCATGAATGAAAAGGTCCTTAATTACCTTTTGGTCTACATGTCAAGGACTTCTCCCTCATAAAACCAGTAGTAATCACAACAAAAGGAATTAACCATAAAAAGAGGT---ATTAAAAATGTATACTTGATTTTTAAATGCAAGCATATTATTTCTT--TACATTAAAATTTTTAGAT--------TTA---------------------AAAAGTGTTTCTGGAAGCTCAATCTAGAAAAGAAAGATTTAATTCTTAACACCCAGTAGGGCAAAACAAATCAGACAGAAATGATATATGAATGTAAATGCAATTTTATTTACCACTTTTGTGCTCCAAATGGCACTGCCAGGAAGCTGCCTGGGTTTAAAAATTTCCCGACCTTCTGAAATGTCTGAGGACAAGGAAGGTGGGCTCACAGTATTATGGGTACTCCAGGCCTCCTAGGATATGGCAGTTGAGAAAATAGATGTGTAAAACTCAGCAACATAAACGGTCAAAGCCAGCAACTAAGGAATTTTAGAACAGCAAAAACAAATGCAAAAGTATGGAAATTTAGGACAAATTGCTTCAAGGAAGGCAAAATAAGCTAATCACTAACAGTGATTT------AAACATTT--AAGTATAACTTAAGTAACTTAAATGTTTGCTGCTACAGAGACATCACTACAATGAAAT--ATTAAAAATTAAGGTTTATATGACATCAACATTGACTCATGAACTGCAATTACTGCACCAAAAAGTAAATAAAAGTCAATGACACTTTAAGAATTAACACTAGAAAAAAGTATTGGGGGGTTATTTTTCTTCTACCAACTATCAATCTACTTAAAAGGAGAAATGGATAACCATAAGGAATTCTATATTCTATAGCTATAAACAACCAAAACCAGTAGGCCAAAGAATGCAATGAGAAACATAAGCAATCGATAAATGCATAAACTTTAAACTGTAGAGAGCTGGTAACATTAAAATGCAAATACCATTATAATCTTAGCATTTAATCACTCTTTCTTCAGTGACCATTAGTTGTCGGTTTGGTTTCGGTTTTTACTTAGGGAAATGAATACTTTATGGAAATTACATCCAATGGAC-------AAAAGTGAAGAAA--CGTTAAAGCAAATTGTCCTAAATTTGCAAATTAAAATGCCTAAAGTACCTGATAAATTATATAGAAATTAGTATCTTA----TTAAAATCTATATAACTAAAACTAAAGCATTTTACTTCCAAACAACCACATTCAGCAATACCCTGAACTAATCTGAAGATGCT-AAACAGCATAAAGAAAAATGTTTACTCCACAAAGATAACATTTTAAAGAAAAACAAGACAAATGTCAAACAATAAAAGAAT---ATATTTTGAATTAGGTAATTCAATGGT--GCATGCATAATTTTGCCAATCAAGTAACCAAAACTTAAGACAAGGTACATAGTACTTACCAGGTTTCTAGAATATCATCAAATTAACAAGTACTATCTCATTAATCACATAAAAATACCACCAGGAATTAAAATAACCAGAAATAAGAATGTGACTACT--CTTGGGGT-AAGAG------ATAGGTAATGGAATAACAGTATTTtggaa-------------aagccacacaagcaatagactggtttaatttttaagtcacaaactcaacccacacacat-tgaagtcca-gcaatccaactcattctctccagcaaacac--tttatttttctccctccagga----ttaccctcaggtgttctttcttacccatcaaatctctaacctagctcaggtaatcactaggctgatttcactgagcagc------aaccactgcaggtcagttacctcactttcataatttccaatcaacttgaatctgtacctatgtcttcttccctactattagtagggagg---------------tgttgtcAAAAGCCATTTCTCTTTTCTCATTTTACTCATGCTCCTGACATCTGGCATACGGTTCTACTGGATTTG--GCAGCAGTCCACCTGTGGATATTTCActgccttcctcgctaatctttcttcatctcctgtacgtgttcttcctctatttgacttccaaagccctggagtttcccagggcttg-agcctagatcctaaatggtgttatctacaatgag----------ggcatcttggaagttgatgcttcccacattcttatttctagttttaa-----tcaaagatctccaaattagca--ggattttcaacttccttcttagcatttccattttctc------acacaaaac---------------- s mm3.chr5 23529879 2393 + 149719773 ATCATCTAATTAAAATGAATTAACTAAAGTTATGCCACATTACCTTAGATGGCTAC------AGTTATCTGGATAAGAATAAATGTGCCCTTCCAATTTTAATAGAAATTAAGAAAATATACTCTGAAAGTTTTCTGAAACCTTTCACTAGTCTAACTTAAATAGCTCTATCCTAGAAACAACTAAATAGAGAGGATAAGGGAAAATCACCTTCTTCAGTCAATAAAGTATTCTGACTTT-GAGAT---TATTTTT-----TGAACTTTTCCTGCTTCAAACCATTTCACACTACTTA----ACATTAAGAACTGAGAGAGCATCATTAGCTCATAA-CATGGGAACA----TTCTGTGACTATGAGGTGA-ACATGCACAA--TGAAGCTTCCTGACACTGTAGTACATTTCCTCTGTCTGTATGTAATCGATTCA-------------------------------------ATTTATGATACAATAAATGAGCAAGTCCCAAATTACACCTTATTCTATGTGACAAGAATTTTCTCTTCAAAGAAATACTTATAACAACAACAACAAAAGAAAATCATTCAAAGAAAATCAATTAAAAATAT-------ATCTTTAAATGCTACAGTTTAACTTCCT-CCTCATTAAAATCTTTAAAAGAAAAATGTTA---------------------AAAAGTGGCTCTGGAAGCTGAATCTTAGAAA---AGGTTTAATATTTAACACCCAATAGAACAAAACAAACCAGAAAGAAATGATACATGAGTGTAAATGCAGTTTTATTTACCACTTTGATGCTCCAAATGGCACTGCCAGAAAGCTGCCTGGGTTTAAAAATTTCCCGGCCTTCTGAAGTGTCTGGGGCCCAGGAAGGCGGGCTCACTGTGTTATGGTTACTCCAAGCCCCCTAGGGTATGGCAGGTGAGAAAATAGATGTATAAAACTCAGCAACATAAAAGATCAAAGCCAGCAACTAAAACATTTTAGGACGGCAAAAGTAAATGCAAAGGTATGGAAAATTAGGACAAATTGCTTTAAGTTTGGGAAAATAAAC--ATCACCTAAAGTGACTTTAACTCAAATGTTTGCGAGCATAATTTACA----TTAAATATTTAA----GTAGAAAAATCA-TACAATAAGGTGAAATAAAAATCAAGGTTCATATAGCA-------TGACTCATGAACTATAACTACAGTACAAAAATAAATGTAAAAGTCAGTCACGGTCCAAGAATTAATACTAGAAGAAAACACTCAGGGATTA-TACTCATCTAACAAGTATGTCTGTACCAAAACAGGGGAAGAGACAACTTTAGAGAGTGTTGTATTCATTAG-TATAAACACTC-AAACCAGCAGGCTAAA------------AGACATGCTCA---GATGAGGGCATGGATGTTGGA-----------------------------------------------------------------------------------------------TGATTTTTATTGATGTGAATGATATCTTAAGAGTAAGTATACCCAAGGAATTAATTTGAATAGTTAAGAGAT-TATTAAAGCAAATTGTCCT-AATTTGCAAATTAAAA-GACTAAGACACCTAA-----TATACAAGAACCAATGTCTCA-TAGTTAAAA----------TAAAATGAAGGCATTTTACTTCCAAGGAACCACACTGAGCAAT---CTCAACTAATC-GATGAAGCTAAATGAAGAGCAAGAACAATGTTTATTCCACCAATGTAATAGTTTAAAGAAAAACAGAAGAAATGTCAAACAAC-AAAGACC---TTATTTTGAGTAAAGCAATTTAAGAATCTGTATGATTA-TTTTACCAGTTAAATGACAAAATCTTAAAACAAGATATATTGTACTTACCATGTGTCTAGAACATTATCAAACTAGTAAG---AATACCAGTAATAAC--AAAAATGCAATCAGCAATTTAAACAACCAAAAATAAGAGATTGACCACCAACTCACAATGAAGAGACAGTAACAGTTAATGATG---------TTTAGAG-GGGAAAAAAATTAAGAAACAGAAAGGAAAAACTAATTGTACTTCTAA--CTCAAACTAAGCAGCCACACGTCTTGAGGCCA-GCACC----------ATCACCAGC---CTCTATCTGTGTCTTACTG-----------TGA-------GTCACTTCCCTAAC----CACA-CTTTACCCAAGTGCAGTTAACAAGGACACAAACTTCTCAG------------CATCACTCCTG---------CTCACTGCAGCACTTCTCA------TGGCATCTGGGTCTGTGCCACCATCCCTGC-ATTAGTCAAGGGGCCATAGGAG-GTCCATGTTGCTCAAAGTTCATTCTCTGTTCTCATTTTCCTCAGG-----------------ACAGTT--------------GTAGTAGTACACCT---------------CCCTCCATGATTAGTTCCCTCCATTTCCTATGCAAGCTCTTCCTC--ATTCACTCCTAAAGCCCTCATATTTCCTAGGAACCGAAGCCTAAATCCTAAACAC---TATTTACAGTGAACGTTTGAAATAGCATATTGGAAACAG-----TTCTACATTCAT-TTTCTAGTTCTAGCTTTTTCTAACATCTTCAAGGAAGTATTTAATTTTTTTCTATTTCCTTAATACATCCATCTTTTTAAGAA-AAATAAA-------------CTTCt s rn2.chr4 179456828 2390 - 183307734 ATCAACAAATTAAAATGAATTAACTAAAATTATGCCACATTGCCTTGGATGATTC-----------------------ATGGATGTGCCCATCCAGTTTTAATAGAAATTAAGGAAATGTGCTCTCCAAGTCTCCGGAA---TCTCACT-GTCTAACCTAAACAGCTCC-TTCTAGAAACAGTTAAATGGCAAGGATAGGGGAAA-TCACCTTCTTTAGTCAATACAGTATCTTGACTTTTGAGATGGTTATTTTT-----TGAACTTTTTCTGCTTCAAATGATATCACACTACTTA----ACATCAAGAGCTGAGAGAGCATCATCAGCTCTTTATCATGGGAA-----------TGACCCGGGTGTGA------CACGAGGTGAAGCTTCCTGACACTG-AGTGCAGTTCCTCTGTCTGGA--------------------------------------------------ATT---GATATCAAAAATGAGCAAGTCTCAAATTACAGCTTGTTCTATGTGACAAGAATTCCC-CTTCAAAGAAATACTTA------AAACAACAAAAGAAAGTTATTCAAAGAGGC---ATTAA--------------TCTTTAAATAATACAATTTAATTTCTTTCCTCATTGAAGTCTTAAAGTGAAAAATATTATAAGGCAATTTTTGAGATTAAAAAAGTGGCCCTGGAAGCTAAATCTAGAAAACAAAGGTTTAATGCTTAACATCCAATTGAACAAAACAAACCAGAAAGAAATGATACATGAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGCCAGAAAGCTGCCTGGGTTTAAAAATTTCCCGGCCTTCTGCAATGTCTGGGGACCAGGAGGGTGGGCTCACTGTATTATGGTTACTCCAAGCCCCCTAGGATATGGCAGGTGAGAAAATAGATGTATAAAACTCAGCAACATAAAAGACCAAAG-CAGCAACTAAGGAACTTTAGAGAAGCAAAAGCAAATGCAAACGTATGGAAAATTAGGACAAATTGCTTTAAGTTTGGGAAGATAAACTTATCACCTAAAGTGACTTTAACTCAAAGGTTTGCAGGTATAATTTATA----TAGAATATTCAA----GTACAAATATCA-TACAGTAAAGTAAAATAAAAATCAAGGTTTATATAGCA-------TGATTCATGAACTATAATTACAGTACAAAAATCAACGTAAAAGTCAGTCA--GTCTAGGAATTAACACTAGAAGAAACCATTCAGGGATTG-GACTGATCTAACAAGTATGTCTACACTAAAGCAGGGAAAGGGACAACCTTAGACAGTGTTATATGCATTAG-TGTAAACACTC--AACCAGCAGGCTTAA------------ATACATGCTCA---GATGAGTGTGTGCACGTCAGA-----------------------------------------------------------------------------------------------TGATTTTTATTGATGGGAATGACACCTTAAGAGTAAGTATACCCAAGGAATTAATTTGAATAGTTAAGAGATCTATTAAAGCAAATTGTCCTAAATTTGCAAATTAAAATGACTACAGGACCTGA-----TATACAAGAACCAGTGTCTCATTGGTTAAAA----------TGAAATGAA-GCATTTCACTTCCAAGTAAGCAAACTGAGCAAT---CTCAGCTAATCTGATGAAGCT-ACTGGAGAGCGAGAACAATGTCTACTCCACCAAGGTAAGGGTTT-----TCAACAGGAGAAATGTCA---AAC-AAAGACCCTGTTTTTTTAAATATGGCAATTTAAGTATTCGTATGATTATTTTTACCAATTAAATGACAAAATCTTAAAACAAGA-ATATTGTACTTACCATGTTTCTGGA-----ATCAAACTATTAAG---AATACCAGTAATAAC--AAAAATGCAATCAGCAATTTAAATAACCAAAAATAAGAGCATGACCACCAATTTGCAATGAAGAG------ACAGTTAATGAAG---------TTTAGAGAGAGAATAAAAAAAAGAAACACAAA-GAAAAACTAATGGTACTTCTAA--CTCAAACTAAGCAGCCACTTGT-GCAAGGCCAGGCACC---------GGTCGCCAGC---CAC--TTGGTGTTTTACTGTCTTGCATGTCTGACGTTGCCATCTCCTCCCTGACTAAGCACA-CTTTACCC-AGCTCAGTTAACAAGGA-ATTAACTTCTCAGCACATCCCAGCCCACCACTGCTG---------CTCACTACAGCCCTTCCCA------TAGCATCTGTGTCTGCGCCTCCATCCCTGC-ATTAGTCAAGGGGCCATAGTAACCTACCTGTTGCCCAAAGTTCATTCTCTAGT---------TTCAAG-----------------ACAGTTCTACTAATCTGGCGGTGATAGCACACCT---------------CCCTCCATGATTATTTCTCTCCATTTCCTATGCAAGCT-GTACTC--ATTGACTACTAAAGCGCTCAGACTTCCTAAGAGCTG-AGCACAAATCCTAAACAG---TACTTAGAGTGAAAGTTTGAAATGTCATATTGGAAACAG-----TTCTACAGTCAG-TTTCTACTTCTAATTCTTTCTAACATCTCCAAGGCAGTATTTAATTTTTTTCCACCTCCTTAATACATCCACCTTATTAAaaacaaacaaacaaacaaacCCACCCTCt a score=44935.000000 s hg15.chr13_random 27923 569 + 414659 ccctcttaattttgccatgtttaaaatttctcccttaaccggttt-catcccagtcttccccatccttataaatggcatccagtcccttgt-------cactctcctctgctccttcagtc--ctctcccccaacacttcgtcaatgcaaatcatcagcaaattcaagactttttatcttcaagttttgtctccgatccttctacttc--ttgtcacttccaccactagcagcacactcgtggccaccaccatctctcacctaacctgctacaagagtctactgctggttatgctt-ctctcaccctgc----atctactcaagcctttcccca--cagcagccagaggaacttttcaaaagtacaaatgtgatcaagcaagtcactattctatttcaaaccttc-aattgcttctcagagcacttaaaatacaaacctttcccagtgcctttct--ccaactcatcttgtggcacttgtctccccgctgctgtgctcccgctattctggcttccttgctgtcct-----------------tcaaacatgccaagcTCTGTATCAATCAGAGCCCAGCTGACTCAGAACACTTCACTATACCATTCC-- s mm3.chr5 23532641 558 + 149719773 ACCTCTAACAGGTGTCACAACCAAAATCTCTCCTATAGTTGGTTTGTTTGCTagtctttctcagttttat-aatggcatctagtcttctggtcaaaaaca-tgttctctgcccttctgatctgttttctatcgaccctt---ccactcaaatcattagcaaacttagaagaattgatctca----tttgtctctggccattacattcccctcagcacttccactgtcagcatccaagtcctgcctgccactgtcttgtacaccatctgctctaacagc---caggtatttctgcttccttccaccccgttacagtctcctcaagactttctctacccagcagctagattaa-ttctaagaaatataaatctcacctaacaagaaactaacctattttgaaccctctgattgtgcctcaattcacttaaaaggcaaaccttt-ccagctgctccccaacccccaca-----------------CACCATATATATTTTCTCCTTGTCTGTGCAATCTTCCTGCCCT-----------------TCAAACATACTGTACTATC-AACAGTCAGAGCCCAACTGACACAG-CTACTTCCCCCTTCCAATCC-- s rn2.chr4 179459585 522 - 183307734 ---------------caCATCTAAAATCTCTCCCACAGTTAGTTTGTTTGCTAAACTTTTTCTTTTTTAT-GGTGGCATCTAGTCCTCTGG-------------TCTCTGCCCTTCTGATCTGTTTTCTATCAACCCTTC-CCCACTCAAATCATCACCTAACTCAGAA----TTATCTCA----TGTGTCTCTAGCCATTACACCCCCAtcagcacttccactgccagtatccaagtcctgcctgccattgtcttgtatgccacctgctctaacagt---caggtatctctacttccttccacccctttagagtctcctcaagactttc---attcagcagctagagtca-ttctaagaaatataaatctcgcctaataag---------------gaaccctctgattgtgcttcaattcacttaaaaggcaaaCCT-----AGCTGTTTCCT--TCTGCCAA-----------------CACCATATTTGTTTTCCCC--ATCTGTGCATTCTTTCTGCCCTGGCTTCCTTAGTGCCCGTCTAACATACTGTACTATG-AACATTCTGGGCTCGACTGACACAG-TCACTCCCTCCTTCCAGTCTTT a score=19497.000000 s hg15.chr13_random 32975 162 + 414659 CATAGAAAAA-CAGaaatattttt----atttgtttattttttaatCTTGATAACCTGCAATAGTTTACAGCCAGAATGGCAGCTTTTATATATGTACACTCATTTAAATACAGTTTCATACAGTAAATAGCCATGGGGCAAAATATCTGCCTCTAGGCACAAAAAA s mm3.chr18 24157320 157 - 91041441 CACAGAAAGACCAGTGGCATTTTTCAATAGTTACTTTAGTATCAACTTTTA-----TTTAATAG-TTGCGGCTACAATATCAGTCTTCAGAAGCATA----CATATAAATATAGTCACAGACCATAAATACCCATTGGGCAAGATATCTACTTTCAGGaaaacaaaa s rn2.chr18 23509301 156 + 82509072 CACAGGAAGACCGGTGGCATTTTTCAACAGTTGCTTCAGTATCAACCTTTA-----TTTAATAG-TTGAGGCTACAGTATCAGTTTTCAGAAGCATA----CATATAAATACAGTCACAGACCATAAATACCCATTGGGCAAGATGTCTACCTTCAGGTAAA-AAAA a score=24057.000000 s hg15.chr13_random 34499 122 + 414659 CTGCAACTGGTGGCAGCGCTGGAGCAGCAGATCTTTGACTTCCAGGGCCACCTACCAGTGAGCTCCCACCCTAGCCAATTTCCTGCGCCTCGTGGCGCTCACCCTGGGCATCGTGGGCACCG s mm3.chr4 128574789 118 + 152921959 CTTCTACAGGTGGCTGCACTCCAGCGGCAGATCTTCGATTTCCTGGG----CTACCAGTGGGCTCCTATCCTGGCCAACTTCCTGCATATCATGGCTGTCATCCTGGGCATCTTTGGTACCG s rn2.chr5 161928864 118 - 191625135 CTTCTACAGGTGGCTGCCCTCCAGCGGCAGATCTTCGATTTCCTGGG----CTACCAGTGGGCTCCCATCCTGGCCAACTTCCTGCATATCATGGCTGTCATCCTGGGCATCTTTGGCACCG a score=13267.000000 s hg15.chr13_random 34621 66 + 414659 CAGTGTGGCTGACGCTCCGGGCTGGCCTGAGTGCGTTTATCACCTGCTTCTACCCGAAGGCTGGAC s mm3.chr4 128576650 66 + 152921959 CAGCCTGGCTTGTACTCTGGGTTGGCTGGAACGCCTTCATCATCTGCTTCTACCTGGAAGTTGGAC s rn2.chr5 161930461 66 - 191625135 CAGCCTGGCTGGTACTCTGGGTCGGCTGGAATGCCTTCATCATCTGCTTCTACCTGGAGGTTGGAC a score=32618.000000 s hg15.chr13_random 34694 193 + 414659 CCCCAGACCGCGACTTCCCCACAGCGTCCAA-ATGCCCCTGTACCGATCCAG--GGATGGAGAATCA-CCGGGCAG-TGGGCGACT-CGGGTCTGAACTTCC-CCTGGCCATGGGGGGCTGCCGTGCAGTCTT-GTCCCTAGCTGCCTGCTGCACTGTCCCTGCAAAGAAGCCCTCAGCAGCGCCC-GCAGATCCTCCTGGC s mm3.chr4 128579940 202 + 152921959 CCCAGGACCGGGACTTCATCATGACCTTCAACACATCCCTGCATCGCTCCTGGTGGATGGAGAATGGTCCAGGCTGCCTGGTGACTCCTGTTCTGAACTCTCGCCTGGCCCTGGAGGACCACCACGTCATCTCGGTCACTGGCTGCCTGCTTGATTATCCTTACATTGAAGCCCTCAGTAGTGCCCTGCAGATCTTCCTAGC s rn2.chr5 161933685 202 - 191625135 CCCAGGACCGGGACTTCATCATGACCTTCAACACATCCCTGCATCGCTCCTGGTGGATGGAGAACGGTCCAGGCTGCCTGGTGACTCCTGTTCTGAACTCCCGCCTGGCCCTGGAGGACCACCATGTCATCTCGGTCACTGGCTGCCTGCTTGATTATCCGTACATTGAAGCCCTCAGTAGTGCCCTGCAGATCTTCCTAGC a score=12907.000000 s hg15.chr13_random 34887 61 + 414659 GCTGCTCCGCTTCCTGTTCGCCAGCTATGGGAGCAAAGTCTTCCTGAAGGAGGAGG-CAGCT s mm3.chr4 128581325 62 + 152921959 GCTGTTCGGCTTCGTGTTTGCCTGTTATGTGAGCAAAGTATTCCTGGAAGAGGAGGACAGCT s rn2.chr5 161935300 62 - 191625135 GCTGTTCGGATTCGTGTTTGCCTGTTATGTGAGCAAAGTATTCCTGGAAGAGGAGGACAGCT a score=111473.000000 s hg15.chr13_random 34948 896 + 414659 TTGACTTCATCAGCGGCTTCCACTCCTAGGGATGCCAGGAGCCCCAGAAGACGTCACGTTGACACCAGCAGCCTCTATGC------------------------------------------GC----------------------------------------------------------------------------------------------------------------------TTCGGGTAGC-CCTGCCCCAC--CTGCCCTGG--------CCCTGTGCCCTTGGCGCTGGAC----TGACCTCGGCAGCCGCGATCTTGGTCAGGACCAGCGGGCACAGCCC-TGGGGGCTC-GGGACCCACTGCAGCCTGTGAAGGCCCCATGGCTCTGCA---CACAGAG---AGGCGGAGCAGC--AGACTT----TGGGACTTGGCCCTTCACAACC-----AGGACTTCAGAG-------AGGAATGGGGCGGGTAAGGGAGGGGCCACGGAGTCCGCATTTTAAAAAATTTCAGACTTAGTGTGAGCTGGAGCTTTTCTCCCTTCTCCAGCCTCTTCCTTTCACCCTTCACCCAGCATCCCGCCC-CTGTCCAGAGAGAAAGAGCAGG-AGGGCTTGCCCTTTTTATCTCACCGCACTCACT-GCCCAGCctgaggaaagccggcg-gaactaggggcaggagttctggtttctcatcgcaggtccatca----gactctgggtgacagctagcagagccctagccctctcggtgcctcagtttccccacctt--gccattaaaagagtcccttggtaggtgagctcttctagccttctcatataac-tctgaattctgtgggctggggagggattataaatcccattttgcagatgtagaaactgaggccaagagaagtgaaatggtttgcttgaggccacactgctagattttggtggaagcaggccttgaacgcagcggactttctgtagtttcagcctctaaaacccagtgtcc--tctcTGAGTTCCGTTTTCAGGCCCCTC-ACT-----------------ACATTCACACATCACCGCTTGCCAAGACCTCTCCTCAACCACCATCTTATCa s mm3.chr4 128581839 1063 + 152921959 TTGACTTCATCGGTGGCTTTGACTCCTATGGATACCAGGCGCCGCAGAAGACGTCGCATTTACAGCTGCAGCCTCTGTACACGTGGGTCCCTGGTGGGGGCGGGGTGTTACTGGAGGG----ACAGTCATTAGTGTTGGTGGGAAAAGGGGGGCACGGAAAAGGCGTGGGAATCCGGGTCTCCTTGTCTGCCTACTCGCAGGCCTGCAAATGCACTTCTAACCTGCTCTTGTTTCCTGCAGGTCCGGATAGCTTCTGTCCCAC-----CCGCGTACAGTTTTCCCTGGACCACTGGAGCCTGAAGCAGTGCTGTCCGGAGGCGCG-----GATCACGATAGGCAGGCGCGCCCC-TGGTGGCGCTTAGGCTAACTGCAGCTTGTGCA-GCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCGGACTCTCA-AGACTTGAACTTGGACCTGACCCT----AGCTCTAGCAGGACTTCAGGGTTGGGGCAGGACGGGGCGGGGGGGAGGGGGAATCACTGGGTTTGTATTTTTTTTAATCTCAGCCTTGGTACGTGCCGGGG-TCTTCCTCTTTCTTCAGC--------TCTACTCCTTACCTAGTATCTTGCCCTCAGTCCAAACAGCAAGA-CAGACCGAACTCACCC----CATCTCACCT--CTCATTCACCTGCCctggggaaagatactgtgaactagaagcaggagtcctgggctccagctacggcaccatcactgacatccggtgtgacatcgggccgagtctttgctccctccgggcctcagtttccccacatcaaataattaaaattatccctTAGTTGATGA-TGCTTCTAGCACTCTCGTTTGGC-TTTCAATTCCATGGGCTACGC--------------------tgcagatacggaaactaaggcccagagatgtgaggtgacttgcttgaagccacacaataaggttttagcagaggcaggttttgaatccggtgtactc----tagtttgagactccCCAATCCAGTATCTGGCCTCTGGACTTGGTTTACAAGCCCCAA-TCTAGCTTGGGCATTCCAGAACACTCACATATCACAGC-CACCACGCACCAGCTCCACCCACTCTTAAAGCA s rn2.chr5 161935823 1044 - 191625135 TTGACTTCATCGGTGGCTTTGACTCCTATGGATACCAGGCGCCTCAGAAGACGTCGCATTTACAGCTGCAGCCTCTGTACACGTGGGTCCTTGGCGGGGACTGGGTGTAACTGGAGGGTGTAAC-----TTGGTGTTGGTGG--AAAGAAGTGCATGGAGAAGGCGTGGGCATCCGGGTCTCTCTGACCACCTACTCGCAGGCCTGCAAATACACTTCTAACCTGCTTTTGTTTCCTGCAGGTCTGGGTAGCTTCTGTTCCGCACCCACCTCGTAAAGCT--CCCTGGACCTCTGGAGCCTGAAGCAGCGCTGTCCGGAGGCTTG-----GATCACGATGAGCAGGCGCGCCCCCTGGCGGCGCTTAGGCTAACTGCAGCTTGTACA-GCCTCCTGGATCTGCAGCCCCTGGAGCAAATGCGGACTCACTTAGACTTGAACTTGGACCTGACCCT----AGCC------GGACTTCAGGGTTGGGGCAGGATGGGGTTGGGGGGAGGGGGAATCGCTGGGTTTGTATTTTTTTTAATCTCAGCCTTGGTACGTGCCAGGG-TCTTCCTCTTTCTTCAGC--------TCTACTCCTTACCTAGTATCTTGCCCTCAGTCCAAACAGCAAGA-CAGA-CGAACTCACCC----CATCTCACCT--CTCATTCACCTGCCctggggaaagatactgtgaactagaagcaggagtcctgggct------------ctatcactggcatcctgtgtgacatcgggcagagtctttgctctctccggggctcagtttccccacctcaaataattaaaataatccctTAGCAGATGA-TACTCCTAGCACTCTCGTTTGACTTTTCAATTCCCTGGGCTATGG--------------------GGcagatatggaaactaaggcccagagatgtgaggcgacttgcttgaagccgcacagtaaggttttagcagaggcaggctttgaatcctgtgtgttc----tagtttgagactcTCCAATCCAGTATCTGGCCTCTGGATTTGGTTTCCAAGCCCCGCTTCTAGCTCGGGCAATCCCGCACACTCACATATCACCAC-CACAACACACCAGCT----CCACTCTTAAAGCA a score=3964.000000 s hg15.chr13_random 36645 56 + 414659 ---TCTGGGTTTTTTAAGCAGCCCAAAAACTCTAGGTGATTTTACTTTTGTAATTGTAT s mm3.chr7 122709280 59 + 134401573 TGAGCTAACTTTTTAAAACCATCCCCAAAAGGTAGGTGATTTTACTTCTGAAATTATAT s rn2.chr1 186320019 47 + 276301343 TGAACT---------AAAACATCCACCAAAGTCAGG---GTTTACTTCTGAAACTGTAT a score=8609.000000 s hg15.chr13_random 36702 67 + 414659 CTCTTGGGAATGCTCATTCCTGATTCCTCATTT-----------CACCAGATAGGTGTG-----------------TAACCTTCTTGTTTCTGCC s mm3.chr7 122709890 95 + 134401573 CTTTTGTGACTGCTTATTCCAGATTCCTTATTTGTGACTATAACAATCAGAAAGTTCTGAAATTTAAAAGATTGACTAAACTTAATGTTCTTTTA s rn2.chr1 186320071 95 + 276301343 TTTTTGTGAGTGCTTATTGCAGATTCCTTATTTGTGGTTGTAACAATCAGGGCATTCTGAAATTTGAAAGACTGACTAAGCTTGTTGTTCTTTTA a score=45968.000000 s hg15.chr13_random 36769 555 + 414659 CATAATAATTCTGGAGT----------CTTTAAACAAAACGACTGTGACTTTTCATGATGAGTAGAAGATAGGTTTTACTCACGCTACAATCAATATTAATTCCTTGCAGTTCGAAGACACTGAGGCCCTGTCTAATAATATGGAAGTTGAACTTGGACTTGGGAGATGACTCCTGC-CTCTCGTCCTCTCTGTGGCTCTGCTTTCTATTA-----TTTTACTCA-TAAGCTTGTTTTGTCTCCTTGCTGAGA---ATTGTCAAACATGAAA----TGTAATTTCAGGCTATAGTGAAGAAAGATGAC---GTAGGCAGAAGAAATTGGCAATCATTTGGCCTGTACATGTTGCTTTTGGTTTTTTTTCTGGACTTAGGATGTAGACCACACCTTGACAGT-TCTGGCCTTT-GAGTCTTTCACAACTGTGATTATAATACATTAGCTCTTCTAGA--AGTTAGAAGTGACTTTGGATTAAGT---------------CTTTCATAAGGTGGCTAAATGAATTTATATGGCTCATCACAATTCACTTGATTGGTTAAGCAGGAAGTTTACAGAGATTTTTTT-----CTTTGCTGTAAATGTTTTT s mm3.chr7 122710121 538 + 134401573 CATAGTCATTATTGTATGCATTGTATTGTATGCATTGTATTACAGTG--------TTATGATAAGAGAATAGCTTT--CTAATACTATAATCAGTACTGGAGC-----------AAAATATTGAAACATTGTGGTATAAAGGGGGA----AATTTGG-CTCAGAAAA-GAATGCCAC-CTCTTGCCTTC----TGACTGTGCTTTTGGTTAATGGTTTTAACTCATTATGTGAGTTTTGACTCTTTGTTGAGGGACACTGTCAATTATAATA----CATAGCTTCAAGCTCTAGTGAC-AAAGGTGACAGGATATGCAGGAGAAA----CCATCTATGGCCCTG--CAT-----CTTTGCCTTTTTTTCTGAGCCTTTGAGAGGGAGAAAAATCCAGTGGTGTCTGGCCTTTCCAGTC---TAGAGATGAG---CCAGCATGTTAGCTCCATTCGACGAGTTTGATGTGACGTTGGACTAAATGTTCCCTCCCAGCCATCTTCACGAGATGTCCAGGTAAATTTATGT-GCTCAGCACATTTTACCGACTTTATTAGGTAAG--------GGAGATTTTTGT-----CTTTTCTAAAACTGTTTTT s rn2.chr1 186320303 532 + 276301343 -GTATTCATTACTGTAT--------------------CACTACAATG--------TTATGATAAGAGTATAATCTT--CTAATACTGTTATCAATACTGGTGC-----------AAAATATTGGAACCTTGTGTTACAAAGGGGAA----AATTTGG-CTCAGGAAA-GAGTGCCCCGCTCTTGCCTTC----TGATTGGGCTTTTGGTTAATGGTTTTAACTCATTATGTTAGTTTTGTCTCTTTGCTGAGGGACACTGACAAACATAAGAAAGACATAGCCTCAAGCTCTAGCGAC-AAAGGTGACAGGATGTGCAGGAGAAA----CCATCTTCGGCCCTGTGCATTTTG-CTTTGCCTTTTTT-CTGAACCCTTCATAGGAAGAAAAG-CTGGTAGTTTCTGGCCTTTTGAGTC---CAGAACTGTG---ATGACATGTTAGTTCCACTTGACAAGTTTGGTGTGATGTTGGACTAAATGTTCCCTTCTAGCCGTTTTCACAAGATGTCCAGGTAAATTTATATAGCGTAGCACACTTCACTGACTTTATTAGGTAAG--------GGAGATTTTTTTTCATCTTTTTTTGAATATGTTTTT a score=31548.000000 s hg15.chr13_random 37324 256 + 414659 CTAAATTGAAAAACTTCTATTACTGTCTTCTGGAGT--ACTAGAAATAAGTGCA----------AGTGATTGTTTTTGGCAGGAGGCCACATAAACATTTCTG-----CTTCTCTGTGCCTTATGGGTAGCATTGATATAAATTGTTAAAAATAATGATTGTAGATAGATAATGTATCAGAGTTTGGGCTCAGCCGTGGTAGCTGCTGTTGACCCAGAGGGACCACTGGGATCCTCACATCTCAGGGCA-GCACATCGTTGGCAGCAATGGTTG s mm3.chr7 122710786 263 + 134401573 CCAAACCAAAACA-TTGTAATGCCACCTCCTGGAGTCGCCTGGCAGT--GTGCCAGCAGCCTGGAGTGATTGCTTTTGGCAGAAGGCCATGGAAACATCCCTGCCTCTCCTCTCTGTGATTTATAGGTAACGTTGACAC--ATTGTTGAAAACAATGACCATACATAGCGGATGTGTCAG-GTGTGGGCTCAGTCAC--TGACTACAGTGGAAAAGGAAAGGGCCCTGAGATCCGT---TCCCTGGGCGGGTCCATCACATGCAGACGTGGTTG s rn2.chr1 186320967 245 + 276301343 ccaaagcaaaaca-ttgtaatgccatctcCTGGAGTCGCCTGGCAGT--GTGCAAACAGTCTGGAGTGATTGCTTTTGGCAGAAGGCCAAGTAAACATCCCTG-----CCTCTCTGTGATATATAGGTAGAGTTGACAC--ACTGTTAAAAACAATGACCATAAATAGAGGATGTGTCAG-GCCTGGGCTTAGTT---------------GAAAAGGAAAGGGCCCTGAGATCTGT---TCCCAGGGTAGGTACATCATATGCAGACATGGTTG a score=26942.000000 s hg15.chr13_random 37742 207 + 414659 TCTTTTGTGGTGCTTTAGAAATTCTG--GCTTACTTG-TATTTTTGCTGGCCTTCTAATGATTTCACTCATCAATCAGAAGATACTAGTGTCCACCTCCCTGCTTCCTCTCCGGTGATCTTGTCTATTCTTGGCC---------attttagagttgacttagcagccttcacaaaactgattggaatttccactgggattaaattgataggtcattttt s mm3.chr7 122711976 208 + 134401573 TTTTGTGTGGTGCTTTGGGATTTCGGAAGAGTATATGCTAATTTTGTTGGCCTTTTACTTACATCATTCATGAAACAAAATTTTCTATCA--ACCTTTCTTGCTTCCTCTCCCTGGATCTTGGCCATTCTTGGTCTTTTGCTGAATTTTACAATTGATTCATCAGTTTTCACAAA---GTTTGGGATTCTCAAGGCCATTAA------AGGTCAATTTT s rn2.chr1 186321540 207 + 276301343 TTTTGGG-GGTGCTTTGGGATTTCTGAAGAGTATATGCTAATTCTGTTGGCCTTTTACTTACTTCATTCACTAAACAAACATTTCTATTA--AACTTTCTTGCTTCCTCTCCCTTGATCTTGGCCATTCTTGGTCTCTTGCACAATTTTAGAATTGATTCATTAATTTTCACAAA---GTTTGGGATTATGAAGGTCATTAA------AGGTCAATTTT a score=953.000000 s hg15.chr13_random 41667 70 + 414659 GCTGACAGGTAAGAATCCCCAGAAGTTGTCACCGATGTGCCTGTGGAAGTGCCTTCCTGATTGCTTTCCC s mm3.chr3 101712406 69 + 160674399 GCTCACAGTTGAGACTCCCC-GTTGCAGTCACCAATGTGTTGGCTTTAACACCTTTTGTGCCCTTTGCTA a score=58682.000000 s hg15.chr13_random 41737 619 + 414659 TCTGGAGCCTTTAAGTTCCATGAAGCACTTAGTTGGCCTGGATTCCACCTATTCAGCATGCTGTGGCAGCTCAGTTCAGTTCCCATTTTTAACTTGGGACTGCATAGATTCCCCGTCATTTCTTTTAGGACCAGGTGGGCAAGAAGATCCAGTCAGTGCTTTATTACTTCTCACTGATATTCACACAGCACATTTAGTGTGAGCCATAGAA--TAAGAAAACTCTTAGTCACATTctgtgtcat-gagaaggttacttaagcttgaaaaccatttccttgtctggtaaatgcggctgtaatgaaatcgaccccattcactgttgtgagaat-taaatgagatgatgtatgcagagcaactaggacagtgcctggGAAAGTGCTACTCATGATCATTTATCTTCAGTTTAGAACAATATATACTTG---CTTACTTAAAAA----AGGAGATAATAGAGAAAAGGTATTGAGAAAAGTAGGAGA----------------GGAGAAAATCACTCATATTCTCACCATTCAGTGATTCAGCCCAGTATCATCAATGTTTTGTTTGGTTGTTTTTGTAGGTGTAGGATT--------TTTTTTTTTTTAAACATAATTTTCCTGCATATGCAGTTTTGCATTTTTAACCC------AAACTTA s mm3.chr3 101712475 573 + 160674399 TCCGGAGACTGTATGT--CTTGAAGC-------TGGCCTG---------------------------------GTTTAGGTTCCCCTGGACACTTCGGGCTCTCTGAGTGCCCCACCATTTCCTTTAGAGCAAGCTAGGCTACAAGG-CAGATGGACAATTTATCACTTATCTCGGAGATTCAC---------------CAAGCCACGGCGCCGGGGAAAGCCATTAGTCATGTTCGgtgtcatggagaaagttacttaaccttgaagaccatttcctcctctggtaagtgtggctgtaatgaaatcaacctcATTCAGTCGAGGAGGAGTCCAGGTGAGGTGACTCGAGGAGAGCTGTGAGGACAGG-CCC---------TTCACCGGCCTCATTCATCTTCATCTTCAAGTGCCATGTACTTGGTGCTAATCTAAAAACTG-AGGGGAAACGAGAAAATGGAGAACAGGAAACGTCGCTGA------TCTTGTAACAGGAGAGAGGCAGCCCTGCCCTCACCACTCGGCCGCTCAGTACAGTGTTGTGAGTGCCTCGTT------ACTTTCCAGGGACAGGGCTCCAACACATTCT-CACTGTGTACATATGCTCCGTGTATC-----TTTTGCATCTTTAACCCGAAGTGAAACGTT s rn2.chr2 189936955 554 + 246339213 TCTGGAGGTGGTGTGT--CTTGAAGC-------TGGCTTG---------------------------------GTTTAGGTTCCCTTAGACACCCTGGGCTCTCTGGGTCCCCCACCGTTTCCTTCAG-----------------GG-CAGATGGACGCTTTATCACTTATCGTGGAGATTCAC---------------TAAGCCACGGTGCCTGGGAAAGCCATTAGTCATGTTCGgtgtcatggagaaagttacttaaccttgaagaccatttcctcctctggtaagtgtggctgtaatgaaatcgacctcattcagtcgaggacgagtgcaggtgaggtgacgcttgcaaagctatgagggcagggccC---------TTCACCGGCCCCATTCATCTTCATCTTCAAGTGCCATGTACTTG---CTAATTTAAAAGCTGGAGGGGAAACGAGAAAATGGAGAACAGGAGACATCGCTGTCAGTGTTCTTGTAACAGGTGAGAGACAGCCCTGCCCTCGACACTCAGCAGCTCAGTTCAGGATTGTGAGTGCCTTGTT------ACTTTCCAGGGACAGGGTT--------TTCTACACTGCGTACATAGCCACTGTGTCCA-----TTTTGCATCTTTAACCCAAAGTTAAACGtt a score=28344.000000 s hg15.chr13_random 42356 164 + 414659 ATGTTCTTTTTAATGTTCTTGTACTTACAAAGATTT-----ATCCTGTTTTTAGATTGATATCTCACCTTGGCAGAAATGAGATAAAATTTTAAAATATTCATTTGGTGGCTTTCACAGTATTATTTGATCTCTAGGGTCTCCTGTGAGTTTGCTACATGGTG-----CATTGT s mm3.chr3 101713048 162 + 160674399 ATGTTCCCTTTAATACTTCTAAACTT--AGAGCTTTCACGAGACCCATTTTTAGATCAATATCTCATATTGGTAG----GAGATGAAATTTTAAAATACTCATTTGTTGGTTTTCA-AGTATTATTTGTTCTCCAGGGTTCCCCAGGAGACTGGTACATGGTG-----CATCAT s rn2.chr2 189937618 167 + 246339213 ATGTTCCTTTTAACACTTCTATACTT--AGAGCTTTCATGAGACCCATTTTTAGATCAATATCTCATATTGGTAG----GAGATGAAATTTTAAAATACTCATCTGTTGGTTTTCA-AGTATTATTTGCTCTCCAGGGTTCCCCAGGAGACTGGTGCATGGTGCATTACATCAT a score=45254.000000 s hg15.chr13_random 44775 451 + 414659 tggtacatactcattgcagagaactgggggaaggagtaaaatattaagaaaaaaataaaaatcacttgccatcctgtcacctagTATTTTCTTTCTAGTTCTTTTCATGCAGTTATATATAACATTTTGATCTTTCTTTTTATGTTACAGAAGTCATATTTGCTTATTGCAGAGTAATCCAAAGAGTACAGAATGTCTAAAGTTAAAAAAGTTA--TTTAAAAAAAATGATCCTTGCCTGGGAGGAACTTTCTATTGTAGGTTGAGAGGGGAGATAGAGGGGCTGTGGGTCAGAGGATGCCCTGGTCAGGGTTGGGTGCCTGTGTCTCTTTGGAGGCAGCAGAGGTCTGCACAGCAGGGTATTACCATTATAGGGAAATGGGGGGGTGGGATGTGTGGAAGGGGAATTAAACTGCCAAGAAGAAAACAAT--TATTTTTATGTTGAGAAGCATTA s mm3.chr3 101715229 390 + 160674399 TGGTTCACACGCCTTGCAG------------AGGAGTGCAGTATAAAAAGGGAAAT-AAAATTACTTG---TCCTGTGGCCCAGGGTTTACCTTCTAGTCCTTT--------CTACAGATGAGACTGGG-----TCTTTTCTCACTGCAGAAGTGGCATT---CTGT---------ACCCAAAGGGTACAGAATGTCTGAAGTTATAATTGTTATTTTTTAAAGAAACAGTCCTCA-CGGGGAGGAGCCTACTGTTGTAGACTAAGGGAG--------------GTGGTCCAGCAACTGCTGTGGGCAAAGTTGGGGACCTG-GTCTGTTTGAAGGCAGCAGAAATTAGCATCGCAGAGACTTCCT------GGGACATTGAAGAGTTTG--ATGTGAAAGGAGAATTGGTCTGTTGAAAATAAATTCACTTTATTTCTGTATCAAGCTGCACTC s rn2.chr2 189940857 395 + 246339213 TGGTTCACACGCCTTGCAG------------AGGAGAGCAGTATAAAAACAGAAAT-AAAATTACTTG---TCTTATGGCCCTGTATTTACCTTCTAGTCCTTT--------CTACAGATGAGACTGGG-----TCCTTT-TCACTGCAGAAGTGGCATTTGCCTATTACAGAGCAACCTGAAGGGTGCAGAATGTCTGAAGG-ATAACTATTCCTTTTTAAAGAAACAGTCTTCA-TGGGGAGGAGCCTGCTGTTGTAGACTAAGGGAG--------------GTGGTCAGGCAGCCGCCCTGGGCAAAGTTGAGGACCCA-GTCTGTTTGTAGGCAGCAGAGGTTAGCATCGCAGAGACTTTCC------AGGACACTGGAGAGTTTG--GTGTGAAAGGAGAGTGGGTCTATTGAAAGAAAATTCAC----TTTCTGTGTTAAGC-ACACTC a score=50682.000000 s hg15.chr13_random 45226 452 + 414659 TTTTCAGGGGTCAGAAGCCCTTTGTGGGGC-AGAGGGAAATTAAGGAGGTATTT----AATAAACAGGTGCAGCTGAATGTGTGTGGTTAAAGTGCAGTCCAGTAGTTATTTATTTGTCCGGATTGTTTATAACCTGCTTCCAGCCTAGACAAGTTGATTTGACCCTGCTGACCTGGCTCATTCAGGCCACTTAACACTGTTTACCTTTGG-----------GTGGGGAGGACATGCATGATCCGCTGGCCGAGTGCCTTTGTAAGGTCTGTAAATAGGATGCATTCTGGTTAAACTCATTATTGCATCACAAAAGCCAGTATCTGATGGGTCTCAGCTCTTTTCTTTTGCACTGGGGAAGACTGGAGGAGAATGAAACTTCCTTGAACCAGTGATTGGGTCTCTACCAAAGAGAGAAACTTAAAGCTAGTGAGAGCCTTAAGATAT----------TTCATTTGAGCACTTGGCTGG s mm3.chr3 101715772 418 + 160674399 TTTTCAGGGACGAAGAGCTGTTTGTAAGGTGGGAGGGAAATGACAGAGATAGTTAACCAACCAACAGGTAGGGCTGGCTGTAGCT-AAGAACGGATAGT-------TTGTTTATTTATCAGGATTGGTTGTCATCTGCTTTTGCTCTGCATGAGTTGCTCTGACCCAGCTGCCCTGGCTCATCTAGGCCACTCAACACTGTTTTTCCTTGGTGTGTGTGTGTGT------GTAGTATAGGATCC---------ATGCTTGTTTAAGGTCGGTGAGCTGAATGCACTGTGGTTAAGCTCATTATCAGATT----------GCATCAGACGGGGTCCAGCTGTTTTCTTT-----------GGACAAAAGGAGAATGGCACTTTGTGAAATC---------------CTCAAAACTGGGAGCTTAAAACTGTTGAGAGCTTTCAGTTAG-ATGTGTCCATTCATTTGGGAACCTGAGTGG s rn2.chr2 189941405 418 + 246339213 TTTTCAGGGATGCAGAGCTGTTTGTAGGGTGGGAGGGAAATGACAGAGATAGTTAACCAACCAACAGGTATGGCTGACTGTGG---AAGAATGGACAGT-------TTGTTTGTTTGTCAGGACTGGTTATAATCTGCTTCTGGTCTGGATGAGTTGTTCTGACCCAGCTGTCCTGGCTCATTCAGGTCATTGAACACTGTTTCCCCTTCATGTGTGTGTGTGTGGGGGGGCAGTATAGACTCC---------ATGCTTGTATGAGATCTGTGAGCGGAATGCATACCGGTTAAGCTCATTACCAGATT----------GCATCAGATGGGGTTCAGCTGTTTTCTTT-----------GGATAAGAGGAG-ATGGCACTTTGTGAAATC---------------CTCAAACCTGGGAATTTAAAAGTATTGAGAGCTGTAAGTTAGAATGTACCTATTCATTTGGGGACCTGA---- a score=213853.000000 s hg15.chr13_random 47482 1499 + 414659 GAAGAACATGG------AGAAGGCAGGCAGAA------GTGACCTTGGAGAACAGTATCTGAGCCAGAAGGCAGGAGGTCAGCGGGGGAGTCTTGAGTGGGAAACTCAAGGGTAGCCTGACTGTCCTTGTCACAGGTTTAGCTGGGCACTGTTAGTTCCCCCCTTTGTCAGTTTGTGGGAATCTGGGCATCAGGGATCTCTTTCAGCCCTTCACATTTGTATTTGGGTGTGCTCAGCTTAAAACGATAGCAGCCTGCAGGAGCTCAGCTCTGCCTCCATTTATAGAGGGAAGAGAAACTAAGGAATGCTCCTTGGGGTGGTGTTGGGGAGCAGCTACATGGGAAAATGAAGGGTGC-----------AGCACCAGTAAAAAGGTGCTCCCAGGACTCCCTCCCACCAGCACT-CGGACCAAGGAAGAAGCATTTAATTTCAGCCAGATTTCTAGATGGTTGCTTTTATTTGTTTTCA-TCTGAATTTGTGCCAAGGATTCAACTTTTCCTGCTTATTTTATTAAAAACTTTATACACAGCATTAATAAATAGATATAAA-CTGCCATATACATGACAAACAGAGGGGCTTAATGAAATTCCCAAGGGTCAGCTGTTGAATAAGTAACAAAAGCACATCTTGGCATGATCAAATTCCCATATATGCAAATTAGGGACAGTGTTTTACCACAGAGTGttttaattaatatttataaatCACAGAGTGCCTTTGAAAGGGCCAGTAAGCTGTTTATATTATTATCATGTCACACAAGTAACAAACCCTTTGGAGATTGCTGCCTACTTTGCATTTTGGTCTGAGAAGTAAGTGAGCATGTTGCCTGTGTTTCTCTCCCTCGTAGGTGTGGTGTCAGCACAGCGGCAGGTCACCGTTCAGGAAGGACCCTTGTACCGCACAGAGGGCTCCCACATCACTATCTGGTGCAATGTGAGTGGCTACCAGGGACCTCCTGAGCAGAATTTCCAGTGGTCCATTTACCTGCCTTCATCGCCAGAGCGAGAGGTGCAGATCATCAGCACCATAGACTCTTCCTTCCCCTATGCCATCTACACCCAGCGCGTCCACGGAGGGAAGATCTTCATAGAAAGAGTCCAGGGGAACCCAACCCTATTGCACATCACAGATCTTCAGGCCCGGGATGCCGGAGAATATGAATGCCACACACCCAGCACCGATAAGCAATACTTTGGGAGTTACAGTGCAAAGATGAACCTAGTGGGTAAGGAGAAGCTGTCTTCACGTTGCCAGCGTCTGGCCTGACTCAGTTCTTTAGTAGTGTAATTTTGCTTTATGCCATGCATTTGACTTT-----AAAAAAAATCCCAAAACTCCCAACATATTTTAGGGGT---CAA----CAGATAGCACAAGGAAACTAAATTTCTGTGTTCACTTCTAAATAATAGGTGGTTGAGGGTGAAACTTTAAAAAGATCTAATGC--AGATGTTAAGAATTTCATAAGTTAACTAACCCTGTAACTGGTGAAAAGGGATATGAAAATAT-AAGGCAAGGAC s mm3.chr3 101717288 1420 + 160674399 GAGGAACGTGG------GGAGGGTAAGCAGGAGGAGTCGTGACCTTGGAAAGCTGTGTCACA-CCAGAAGGCAGGGGCTTGGTGGGCCAGTC-AGAGCCAGGAGCCCAAGGGCA--CCGAC----CTTGTTTCAGATCTTCCTGCACACTGTCC-CTCTCTGCTTTGTCAGCTGGTGGGACTCTGCGCG------------------CCTTCCCACTCCTGGT------CACTCCTTGGAAACTGACAGCCG-TGGTAGGATCT---GTTTGCCTCTCTTTCTACAGGGAAAAA------GGAGGTGCTCCTTAGGATAG-GATGGAAA------------TAAAATGGAGTGCCCCTCCCAAGTCGTGCCCCAGTAAAAA---GACTCAATGGCTTTCTTGGGCCAACCCCACTAATCATGGGAGAAATGTTTAATTTCAGCCAGATTACAAGGCGGCTGCTTTTATTTGTTTTTTTCCTGGATTTGTGCCAAGGACTCAACTTTTCCTGTTCATTTTATTAAAAAGTTTATAAACAGCGTTAATAAATAGATATAAAGCTGCCGTATAAATG----ACAGCGAGCCCAAATGAAATTCACAAGGGTCAGT-GTTGAATAAGTAACAGAGCCATGTCCTTGCGCGATCAAATTCCCATATATGCAAATTAGACGCAGAGCTTTACCAC--GCTGttttaattaatatttataaatCACAAAGTGCCTTGGAAAGGGCCAGTAACCTACTTATACTGCCATCATGTCACACAAATAACAAATCCTCTGGGGACTGCTGTCTGTTTTGCA-TTCAGTCAGAAAAGTA----AGCACGTTG-CTGTGTCTGTCTCCC-CTTAGGTGTGGTGTCAGCGCAGCGACAGGTCACCGTCCAGGAAGGGCCCTTGTACCGCACAGAGAGCTCCCACATCACCATCTGGTGCAACGTGAGTGGCTACCAGGGTCCCTCTGAGCAGAACTTCCAGTGGTCCATTTACCTGCCCTCTGCTCCTGAGCGTGAAGTACAGATCGTTAGCACGGTGGACTCTTCCTTCCCGTACGCCATCTACACCCAGCGAGTCCGCGGTGGGAAGATCTACGTGGAGAGGATCCAGGGCAACTCAGCCTTACTTCACATCACAGACCTGCAAGCCCGGGATGCCGGCGAGTATGAATGTCACACCCCCAACACCGATGAGCGCTACTTTGGGAGTTACAGTGCCAAGATGAACCTAGTGGGTAAGT-GACTCTGCCTCCACATGGCCAGTGTCAGGCCCCAGTCCCTCCCT----CATGTGCTTTTGTTGCCTATC--------GATATG--------------------ATTCCCCAGACACCTTAGAAAACCGCAT----GAGGGAGCATGAGTGACCATGAATCCTAAGTACACTTGTGAACCCTGGATGGCTAAGGCTGACAC-ATGGAAAGTTCTTGTGC--AAGCATCAATCACCACAGTGGTTAAGCAGACCTTT-GCTGGTGAAAGGCAAAATGAATTTATCAAGGCCAGATc s rn2.chr2 189943894 1430 + 246339213 GAGCGACATGGAGGGGTGGGGGTTAACCAGAGGGAGAAGTAACTTTGGAACGTT-TGTCATA-CCAGAAGGCAGGGCTTCAGTGGACcagtc-agagccaagagctcaagggta--ctgac-----ttgtGTCAGATCTTCCTCCGCTCTGTCC-CTCTCCGCTTTGCCGGCTGGTGGGAATCTGCGAG------------------CCTTTACACTCCTGTT------CACTCCACGTGAAGTGGCCGCCA-CTGCAGGATCT---GCTTGCCTGT--TTGTACAGGGAAGAG------GGAGGTGCTCCTTGGGATGA-GTTGGGAA------------TAAAATGCAGCACCC-TCCCAACCCCCGCCCCAGTAACA----GACTCAGCGGCTTTCTTGGGCCAGCCCTGCTAATCATGGGAGAAACATTTAATTTCAACCAGATTACAAGGAGGCTGCCTTTATTTGTTTTCG-CCTGGATTTGTGCCAAGGACTCAACTTTTCCTGTTCATTTTATTAAAAAGTTTATAAACAGCATTAATAAATAGATAGAAAGCTGCCGTATAAATG----ACAGAGA--CCAAATGAAATTCACAAGGGTCAGC-GTTGAATAAGTAACAGAGCCACGTCCTTGCTCTATCAAATTCCCATATATGCAAATTAGATGCCCAGCTTTACCAC--ACTGttttaattaatatttataaatCACAGAGTGCCTTGGAAAGGGCCAGTAACCTATTTATACTGCCATCATGTCTCGCAAATAAACAGCCCTCTGGGGACTGCTGTCTGTTTTGCA-TTTGGTCAGAAAAGT----------------TGTGTCTGTTCCCC-CTTAGGTGCGGTGTCAGCGCAGCGGCAGGTCACCGTCCAGGAAGGACCCTTATACCGCACAGAGGGCTCCCACATCACCATCTGGTGCAACGTGAGTGGCTACCAGGGTCCTGCTGAGCAGAACTTCCAGTGGTCCATTTACCTGCCCTCTGCTCCAGAGCGTGAGGTACAGATTGTCAGCACGGTGGACTCCTCCTTCCCTTATGCCATCTACACTCAGCGAGTCCGAGGCGGGAAGATCTACGTGGAGAGAATCCAGGGGAATTCAGCCTTACTTCACATCACAGACCTGCAAGCCCGGGATGCTGGGGAGTATGAATGCCACACCCCCAACACCGATGAGCGCTACTTTGGGAGTTACAGTGCCAAGATGAACCTAGTGGGTAAGT-GACTCTGCTCTCACCAGGCCAGCGTCAGGCCCGAGTCCCTTTGTT-GCCACGAGTTTTTGTAACATACC--------AATATGACTTAAAAAAAAA----AAAATTCCCCAGATAGCTTAGAAAA-TGCATGAGGGAGGGAGTGTGAATGAACATGGTGCCTATGCACGATTGTGAACACTAGTCAGTTGAGGCTGACAC-TTGGAAAGTTCTTGAGCAAAAACATTAGGAACCTCAGCTGTTAAGCAGACCTTT-GCTCGTGAAAGGCAGAGTAAGTTTGTAGACTCGAGATc a score=6132.000000 s hg15.chr13_random 48989 64 + 414659 TTGATGATCTGAATGACAAGGAAGATGAGACATATGACATCAGGTGGAAGAGAGGAGGAACCTC s mm3.chr3 101718798 60 + 160674399 TTGAAGAT----GTGACTTGGAAGGGAAAGTGGGTGAGACCAGCAGGAAGAGCGGCAACACCCC s rn2.chr2 189945406 53 + 246339213 -------T----GTGGCTTGGAAGGTAAAGTGGATGAGACCAGCAGAAAGAGAGGCAACGCCCC a score=3038.000000 s hg15.chr13_random 50128 58 + 414659 GATGTGGGAAGGAAAGAAAGGATATTGTAT-AGAAATGTAA-------AACTAAAAGTTCCAGGAG s mm3.chr3 101719301 65 + 160674399 GACGTAATCAGCAAACAAGCGTCCCTGTTT-TGGGATGTAATTCCCTGGACTCCACTCCTCAGGAG s rn2.chr2 189945917 65 + 246339213 GAAGTGATCAGCAGACAAGAGTCCCTTTTTGGGGGGTGAGATTCCCTAGACTTCAC-CCTCAGAAG a score=146476.000000 s hg15.chr13_random 50191 1096 + 414659 TCCATTAGAGGATCAGTCAGAAGTGAAGTTAAAGTATCTCAAAGCAGTGCCAGAATCAACAACAAATGTTATTTGACCTATAAGACAATTGTTTAAAGACAGTATTTTCAGGGAGTTCATTTATTATGTAATATGAAAT-ACACCCCATGTTTTATCCAAGTGTTATTAAAATACGAGACAGGTAAGTGTAAGCACCAAAATAATGCATTTCCAAATCTGAACAGAAAA----CTTTCTGTTTATGTGCAT--------------------------------------CTGGGGCTGTCTGTGGCCTTGAATCGATGGTTCAAGGATGACTGTTAGGGACGCAGTGTGGTGACGCCTGCGTGGAATGGGAGCTTAGCCCCGGGAGTCTCAGATTCTGTGGCTTTGTGACTGCAGTCT-CAGGACATTTCTGTGTTGCAGTGATCCCAGACTCCCTGCAGACCACTGCCATGCCCCAGACTCTGCACAGAGTGGAGCAGGACCCACTGGAACTCACTTGTGAGGTGGCCTCGGAGACCGTTCAGCACAGCCAGGT-GCTGTGGCCTGGCTCTGGCAGAAAGTTGGCGAGAAGCCCGTGGAGGTCATCTCCCTGAGCCGAGATTTCATGCTTCACTCCGGCAGCGAATATGCCTGGAGGCAGAGCCTGGGGGAGGTGCGGCTGGACAAGCTGGGGAGGACCACCTTCCGCCTCACCATCTTCCACCTGCAGCCTTCTGACCAGGGCGAGTTCTACTGCGAGGCCGCCGAGTGGATCCAGAATCCGGATGGGTCGTGGTATGCTATGACCCGAAAGCGTTCCGAGGGAGCCGTGGTCAACGTCCAGCCAACTGGTCAGTCCCTCTGAGCCTCTTGTCCTGTCCTTTACTTGGTGGTGAAAGCTGTCGGATACTAGGAGAATGTGGAGACTCCTTCTTTGGGCACCTCTACCAGGACAGCAGGTTTTCATGTGAAGTTAAAGCCGGTCTTGTGTGCGGCCGGAGGGAGCTGAGGGATGTGCGGGACATAG-----GTATCCTAAGACCTGAgtcacaggcaggtgccacacagactgaatcctgcttagagacatgctttcttccacctacgtggtgtt--------------------tacacttttttgaattagaaactcatttta s mm3.chr3 101719371 972 + 160674399 ----------CCTGGGTCAGAAGTGAGGTTGAGCTATCTCAAAGTGATACCCAA-----CAAGGAATCTTACTAGATGT---CAGCAGTTGTTCTTACACAGTATTCTCGGAGAGCTC--TTCTCATACATTTTCTAAG-AAAATCCACCTTTGCTCTGAGCGTCATTAAGATCC----CAAGCAAGTGTCAGTGCCAAAAA------------------------------------------------------------------------------------ATACTGCCCCTGT-TGTGGCGTTAA--CAGTGGTT----------------------------------TCTGTGTGGAGTGAGT----------------CTCAGATTCTATAGCACTGTGACCTCCCTCCATGGGAACATTCTATTTTACAGTGATCCCAGATTCTCTGCAGACCACGGCTGTCCCCCAGACACTGCACAAAGTGGAACAGGATCCCCTGGAGCTCAGCTGCGAAGTGGCCACCGAGACCGTCCAGCACACCCACCTCTCGGTATCCTGGCTGCGGCAGAAGGGTGGCGAGAACCCTGTGGAGGTCATTTCCCTGAGCCGAGACTTCATCCTGCACTCCAGCAGCGAATATGCCCAGAGGCAGAGCCTGGGCGAGGTGCGGCTGGACAAGCTGGGGAGAAGCACCTTTCGTCTCACCATCTTCCACCTGCAGCCTTCCGACCAGGGCGAGTTCTACTGCGAGGCTGCGGAGTGGATCCAGGATCCAGATGGCTCTTGGTACGCCATGACCAGGAAGCGCTCCGAGGGTGCCGTGGTCAACGTCCAGCCCACTGGTCAGTGTCCCTCAGCTTCT-----TGTCCTTCACCTGGTGGGGA-----GTCAGATGCTAGGAGGTTGTGGGGACGCCTTGTTTGATGACCA-TAGCAATATGGTAGGGTTTTGAGTGAGGTTAGAGATAGT------TGTAGCC----TAGGCTGAGGGAAACA-GGTACATAGTCCCAGCTTCCAGCGAGCTG-----CATACAGCTGCC---CATACTGGCCTCTGCTCATTGTCATGTTTGCTCT--ACTAGATGGTGTCGTAAATATTTTATCTTGAATAAAACTTTTTTTAATGAGAGTTTTTTTCAA s rn2.chr2 189947209 1061 + 246339213 ----------CCTGGGTCAGAAGTGAGGTTGAGCTGTCTCAGAGCAATACCCAAACCAACAAGGAATCCTATTAGATGT---CAACAGTTATCCCTACACAGTATTCTCAGGGAGCTC--TTCTCATACATTTTCAAAATAAAATCCACCTTTGCTCTGAGTGTCATTAAAATAC----CAAGCAGGTGTCAGTGCCAAAAATATTATCTTAGCTACCACAGCAGAAGAGTGTATTTGGGTTTATATGCCTTTTGGGGTTGCCTGTGGCCTTGAATCAATTGCCAGAGGCTGCCCCTGT-TGTGGCATTAA--CAGTGGTT----------------------------------TCTGTGTGGAGTGAGT------------GAGTCTCATATTCTGTAGCATTGTAACTGTCCTCTGTGGGAACATTCTATGTTACAGTGATCCCAGATTCCCTGCAGACGACGGCTGTCCCCCAGACTCTGCACAAAGTGGAACAGGACCCGCTGGAGCTCAGTTGCGAAGTGGCCACCGAGACCCTCCAGCATACCCACCTCTCGGTATCCTGGCTCCGGCAAAAGGGTGGCGAGAACCCTGTGGAGGTCATTTCCCTGAGCAGAGACTTCATCCTGCACTCCAGCAGTGAATATGCGCAGAGGCAGAGCCTGGGCGAGGTGCGGCTGGACAAGCTGGGGAGAAGCACGTTCCGCCTCACCATCTTCCACCTGCAGCCCTCCGACCAGGGCGAGTTCTACTGCGAGGCTGCAGAGTGGATCCAGGATCCAGACGGCTCTTGGTACGCCATGACCAGGAAGCGCTCTGAGGGTGCCGTGGTCAACGTCCAGCCCACTGGTCAGTCTCTCTCAGCTTCT-----TGTCCTTTACCTGGTGGGGA-----GTCAGATACT-TCAGGTGGTGGCGACACCTTGTTTGGTGACCG-TAACAACATGGTAGGGTTTTGAGGGAGGCTAGCGGTAGC------TGTAACC----TAAGCTGAAGAGCACA-GGTGCATAGACCCAGCTTCCAGCGAGCTG-----CACACAGCTGCT---CATGCTGGCCTCTGCTCAATGTCACATTTGCTTT--ACTAGATGGTGTC----CTATTTTATTTTGAATGAGACATTTTTAAATGAGAGATTTTGCAGA a score=40749.000000 s hg15.chr13_random 51287 509 + 414659 aaaattgggagatttcTGAGAAACCATTTGTATCTTAAAACTCCGGGCTTTCATTCCCATTAGCCACAGTTGCTGCCCCGTTTAATGATGTTGCCTTCCTCAGGTACCCATCTGGTTTCATTTGCAGAAGCCATTTGAGATAATGAGAC--TTCCATCCAAGGTCTAACATTATGAACTAGAGAAATTTTGGCttaaattattattttttatctaataataGTCTTTGGTGATATTTTGTA----ATTTCCAaaatgctttatcacatattacttcaccatcccccagacgttctgtgaggtgagtacgtggtagtattcctattttgcaggtgaggatgctgaATGCAGATTACTTTATGTTGGGGCTCAAGAG---GAGTCATAGGGCATGTTGATGAGGCCAGTCTGAGAGTACCAAGTTCCACTGTATATGTTTTCTTAAGTGAAGACCTGGA-AGGGGTCCTGAGGAGG-TTGCATGATGTCTTTAGACACCATCATTTGTCTTGAGGCAAAATG------------------- s mm3.chr3 101720573 460 + 160674399 AAAAGTGAGTGATTTTACAGAAA--ATCTTTGTCTTATGACTCTGGGTTCTTATTCCTGTTAGCCATGGATGCCACTCCGTGTGATGATGTTGCA-------------------------GTTACAGAGGGCATTTGAGATGATGAGCCTTTTCTGTTGGATGCCTGAGACAGCGAGCTAAGGAGATGTTAGTGT--ACCGTTATTTTT------ATAGTAATATTT-CTGCCATTTTAAACAAGACTTCTGAAATGCTTTAACGTACATTGTCATG---------------TCTGTAAGGCAAGT-CACAATGGCATCCACACATTGTGGGTGAGCATGCTGGATGCAGAGTACCCTGTGGTGTGACCCCAGAGTGTGTGCC-------------ATGTGGCCAGTGTG-GAGTATTAGGTCCTGCTGTGGACACTCTGTCAAGGGAAGACCTGGGTAGGTTTCCCAAGGGGGAAAGAATAGTATGTTTAGA-------------GCTGAGGTAATGGTGGTGGTTGTAGAAATTTTt s rn2.chr2 189948493 434 + 246339213 CCAAGTGAGTGATTTCACAGAAA--ATGTTTATCTTATGACTCTGGGTTCTTAGTCCTGTTAGCCATGAATGTCACCCGGTTTGATGATGTTTCC-------------------------GTTACAGAGGACATTTGAGATGATGAGGCTCTTCTGTTGTGTGCATGAAACAGTAAGCTAGGAAAATGTTAGTGT--ACCATTATTTTT------ATATTGATATTT-CTACCATTTTAAACAAGACCTCTAAAATGCTTTAACACATATTGTCATG---------------TCTGTGAGGCAAGT-TACAGAG-------CACCCTGTAG-------TGTTACACCAGGAGTAAC-----GTGTGATCCCAGAGTTTGTGCC-------------ATGAGGCCAGTGTG-GCGTATTAGGTCCTGCTGTGGACACATTGTCAAGGGAAGACCTGGGTAGGTTTCCTGAGGGTG-GAGAATAGTATGTT-------------------TGAGGTAATGACAGTtgttgtagaaagtttt a score=15445.000000 s hg15.chr13_random 51797 154 + 414659 TGGTGGCACAGCCAGCTGAAACCCTCCCTGGCTTCTCTTGGTATCTCCTGTGGCCCCAGACTCTACTCCCCAGTCTCATGAGCCCACCAGGCTCCAGGCCAGAGCTGACAGCTGTTGCTGGCTGCCTCTGCTGGGCTGAGGGCAGGTTCTCACA s mm3.chr3 101721192 148 + 160674399 TGGTGGCCTGGCACACTATA--TCCCCACAGCTTCTTTGGATGTCTCCTGTGACTCTGTGTTCG--TCCCTAGT-TCTTGTGCCTACAGGGTTCCAGTTTTGAGCTGACGGCAGCTGTTGATGACATTGGCTGAGCTT-GGGCAGGTTCTCCGG s rn2.chr2 189948969 140 + 246339213 TGGTGGCCTGGCACACTGCAG-TCCCCGCAGCTTCTCTTGATGTCTGCTGTTACTCTATGTTCT--TCTCTGGG-TTTTGTGCC--------TCCAGTGTTGAACTGG-AGCAGTTGTTGATTGCATTGGCTGAGCTG-GGGCAGATTCTCAGG a score=5665.000000 s hg15.chr13_random 51951 441 + 414659 TGGGCCTTCAGTTCCCCCAGCTTTGGTTGGAGCGTGGTTGTTGTGCCGTCACTAAGTTGGTGATGAGTGGCCTGAAAGCCTTTCCTTGTGTGGATGCTCACTTCCAGTGAGGACTGTGGTGGTTCTGGTGAGTGAGTGTGGCTTTGTGGGAAATGAGCTGGTGAGTTGCAGTACAGGTGGGGTCCTTCTTCAGGA----CCTGTCTCTTGGGCTCCCTGTCCCATTTGCTGCAGTCAGTTGTCTGGGTCTTTGCATACTTTCTCTGCCATTCTAGAGTAATGCCTCAGACTCAgctaacagtacacattttggggctttgtcccagaagtcttcaattggaggctcccgggatgggacctgggaagctggatttctggcacgcttcccaggtgattctTCTGCTATCTACATTTTTTTTTTCAAGCAAAGCTTCTAGGGCAGAAG- s mm3.chr3 101721340 363 + 160674399 CTAAGCTGTGGGTCT----GACTTGGTTGGAGGGCAATCATAATACAGTTACTGAGGTGGCTGTG--------GAGGGCTTTTT------------CTCTTCTCTGATGAGGA----------------GAATGA---CGCCTTCATG----------TTATAAGCGGTAGTAC--------TCCT--GTCAGAACCTGCCTGTCTCTTGTCCTCCTTGTCCTG------GTGGTCAGTTGCCTTGGTCTGTGCATG-GTACTCTGACATTTGAGA-CAATGCTTCAGAGTCACCAAATAGTAAAC--TTTGGGAC-ACACCCCTGAAGTCCCTGTTCGGAGACTCCTGGCGAGG---CTGGGAAGCTGTGCCTTAAGTA---TTCCCTGGTCTTTCTTCACCTGTCTACATTTTATCTT---GACACAGCTCTGAAGGGGGCAGG a score=147544.000000 s hg15.chr13_random 52392 1421 + 414659 -------CAATTCTCTGGACATCACTTTAATAAGTCATCTAATGGATGTGAAATCTTTTACCATAGGGGTTGG----TAGGGATAGGGGGCACTTTATCTGCTCT------GTAGGGCATTTAGCAGCTTCTGGATTTTTCAGTATTAAAAAATCTATCCAAGGGGCTTTATTTTATATTTATCCTTTCCCTTCCTGGAAAGTTTTGAGATCAACTTCAAAAA--TTTGGGCCAAATTTTGAGTCTTAATGCTTTTAAATTAGGTTGCATCAGTTAATCTTCTTTATTTTAATCTTACCAATTTGGAATTAGAACTTTTTGAATTTACCCTGAAAATGTATCTAGACTAAGCCATCAAAAGGAAAACTAAGTG--------AAAAAAAAGTTGATGACTTCACTCTGCATTCCTGTGCTGTTTAGGTTCAGTAGTTGCATCTCCAAC------TCTACCCTTCTCAGTTTATTTCAGTAAACATGTAGCCAGTCTCCACAGCATTGAAGGTGTGATGGTGATAGGCATTAAGGGCTTCAAAGATGACTAGCACTGGTCCCTGCACTTAGGCAGACCTGAGAACCAATGGACAAGTAAAATGTGCTAAGTGCATTGATAGCATTTGTATAGAGTCCTCTGGGAATACCGGAAATAGGAAGTGTTCTTGCAACCATAGTTTTCTCTGAATGGGATGGTTGATAAGACAAATCCAGGAACACCAATAAGTTTCTTGACTTGAACTGAGTCTGGAAGCTTGAGGAGTCAGGAG-AAGAAGCATAAAAGTGCAAAAGTGTTTGATATGTTTGGCAAGCAGAAAGGAGTCAAGTATGACTAGTTCCAGATGTTCAGTTCCAGATGTGTGTGATGAGAGGAAAGGGAGCCCGAAGCCCCAAATGCAGTGATATAGAGCCAGGGCTTGACTCTGTGGGCCAAGAGTTTTTAAGCTGTTCTT---GGAACCCTGGAAGCCCCTCAAAGGTG--CCTAGGAGGTTAGACATGGG-TGTGTG---TTG---------------GTGTTCATGTGCACATTGTGCACACCCAGGAGTGCAGGGAGAAGGCATGCAAGGGCCTGGGTGGTCCCCCCTTGCTTCAACTA-----------TGTTGGGCAGCAGAAGATTTTATATGAATAAAA--AGTCCAC-TTCCTTTGTCCTCTTCTTAATAAAGTTTGAAGACCTCTGCTGCAGACAGTTGGAGAGGAGGTAGAGATTTTTAAGCAGGGAGTAAGACAATCAGATCAGG-GTTTCAGAAAGAAAAACCTAT------------GGAGGCCACCTGGAGGTTGATTAAATCTGTTGAGTCTGAAGCCAAGAGACCAGGTAGAAAAGAGCTAATAAGAGCCAAGGCTAGGTCAGTGG------------------GTGCCAGAGGCGAAAGAATAAAGAGCACAATGGAAGGAGGGGTCCAACTGTCTAGAACCCCAGGGGCTGGGGCTGGGGCTCTGGGGGTTCCTTGAACTGTGGGAGGGAAGG s mm3.chr3 101721703 1350 + 160674399 GCTTATAGGATCCTCTGGA----------------CACCTAATGGATGTGAGAGC-----AAAAGAAGATTGTATCCTGGTGAGAGGGCACACTTGATCCACACTTAGGACTCAGAGCTCTTACTGTCTTCTGAATCTTCTAATATTAAGAAATTTACCCAAGAGGCTTTAGTTCCTGTTTATCGGTTTCCTTACTGGTTGGTTTTAAGATCAGTGTCAAAAAAGTCTGGGCCTAATTTCCAGTCTTAATGCTTTTAAATTAGGTTGCATCAGCTAATCTTCTTTATTTTAATCTTACCAATTTGGAATTAGGACATTT-GAATTTGCCCTGTAAATGTATCCAGACTGAGCTAAGAAAGGAAAACTCTAATGGAAGT---GAAAAAATGTTGATAGCTCCACTGTGTGTTC-----CAGTTCAAACTGAGGAGTTGCAACTCCGCCTTGGAGTCTGTTTCTTCATGTTTATTTTAATAGACAT-----TAGTCTTTACAGCACTGAAGGTG---TCGTGCGAGGCATTCAGGGATGCCAAGATGCACGACATCGGTCTGTGTACTTAAG------------------------------GTGCTAAGTG------------------------CTGTGTGAATACTGAAGGC------TGTTTTTGC-TCTAT-GTTTTCTCTGGATAAGATGGCTATTACAACAGATCTAGGAATTCTAGTTCCTCAGTAGGCTTGAGCTGTGTC---AAGGTTGAGCAGACAGCCACAGGAAGTAGGGAAGGGCGGCAGACAT-------GCTGTCGGGCATAAGAAAGTCA--CGTGACT------GGATGGTGGGTTCTTGGTTGAGCAGTAGAGAAAGTAGGGCCCCTGAAGCTGGGA--GCTGGGAGGTCGAACATGGGATGGACTCTGTGGACCAGGAGTCGCCAAGCCATTCTTCTTGGCGCTTTAGGAGGTCCGTGGGGGTGTGCCTGAGAGG-TACACGTGGG-TGAGTGCACTTGCTCACTCgtgtgtgtgtgtgtgtgtgtgtg-tgtgtgtgtgtgtgtgtACCAGTGGGAAGAGGGCGAGAACCTGTGAGCTCCTCT--TGCTTCAACCAGATAGTTGCCTTATTGAGCAATGAAAG-TTTTACATGAAGTAAAGGAGGCCCC-TCTCTTTATA--CCTCCTGAAGAACTTTCAATATAAACACTGGAGGGAATC----------------CCTTTAGTCAGGGATTA--GCCACCTGATTGGGTAATTTAGGAGGAAGAGCTCAGAGATGTGGAGGAGGGGGACATGTGGAAGTTGGTGAGACAGGTTGGGTGAGCAGTCAAGAGAAAGGGTTGTAAAGAACTCATT--TGGCCAGGCTGTGGTGGTGGTCTGGGAGGTGAGACTGGGTGCCAGAGGCAGAAGGAGAGAGAG------TGATGGAGGAGGCCAGCTGTTTGGAA-------------------GTCATCGGTGGTTCCCTGACCCCTGGCTGAGAGGG s rn2.chr2 189949113 1320 + 246339213 GCTAATAGGATCCTCTGGG----------------CAACTAATGGATGTGAGAG------GAAAGGAGGTTGGATCCTGGTGAGAGGGCACACTCGATCTACACTTAGGACTCAGAGCTCTTCCTGGCTTCTGAATCTTCTAATATTAAGAAATTTACCCAAAAGGCTTTAGCTCCTGTTTATCATGTTCCTTACTGGTTGGTTTTAAGATCAGTGTCAAGAAAGTCTGGGCCTAATTTCCAGTCTTAATGCTTTTAAATTAGGTTGCATCAGCTAATCTTCTTTATTTTAATCTTACCAATTTGGAATTAGGACATTTTGAATTTGCCCTGTAAATGTATCCAGACTGAGCCAAGGAAGGGAAATTTTAATGGAAATTAAAAAAAAATGTTGCTAACTTCACTGTGTGTTC-----TAATTCAGACTAAGGAGTTACAACCCCACCTTCGAGTCTGTTTCTTCATGTTTATTTTAATAGACAT-----TAGTCTTCACAGTGCTGAAGGTG---TTGTGCGAGGCATTC-GGGATGCCAAGATACATGACATCGCTCAGTGCACTTCAG------------------------------GTGCTAAGTG------------------------CTGCGTGAATACTGAAGGC------TGATTTTGC-TCTAT-GTTTGCTCTGGATAAGATGTTTATTACAGCAAACCTAGGAATTCTAGTTCCTCAGATGACTTGAGCTGTGCC---AAGGTTGAGCAGACAGATGCCAGAAGTGGGGAAGAGCATCAGACATT-CCGTAGCTGTCAGGCAGAAGAAAGCCA--TGTGATT------GGATGTTGCGTTCTAGATGGAGCAGTAGAGTAAGAAGGTCACCTGCAGCTGTGA--GCTGTGAGGTAGAGCATGGGCTGGACTCTGTGGACCAGGAATTGTCAAGCCATTCTTCTGAGAGCTTTAGGAGGTCTGTGGGAGTG--CCTGAGAGA-TGCTGGTTGGCTGAGTGCCCTTGCTCAC-----------------------------ATGCACGTGTGAGGACCGGTGGGAAGAGGGCAAGAACCTGTGAGTTCCTCTCTTGCTTCAACCAGATATTTGCCCTATTGAGCAGTAAAAG-TTTTATATGAAATAAAGGAGACCCCCTCTCCTTACA--CCTCCTGATGAACTTTCAATATGCACACTGCAGAGGCTA------------GAGATTTTTAGTCAGGGATTA--ACCCCCTGGTTGGGTAATTTAGGAGGAAGAGCTCAGAGATGTAGGGGAAGAGGACATGTGGAGGTTGGTAACAAGGGTTGGGTGTGAAGTCAAGAGACAGGGTTGTAAAGAACTCATT---GGCCAGGCTGTGGTGGTGA-CTGGGAGATGAGATCTGGTGCCAGAGACAGAAGGAGAGAGAG-----GTGATAGAGGAAGCCAGCTGT----------------------------------GGTTCCCTGACCCCTTGCTGAGAGAG a score=45716.000000 s hg15.chr13_random 54779 470 + 414659 TTTTCCCTGTCAGGAAGTTTGGCTGCTAGAGGAAGTAGTTAGGTCACTGGAAAGAAGAGG----TGTTTGCAGCAGGTCACTGGCCTATATCGGCAGGGAGGGGCTGGAGA----GCCTGAGGAGTGGGAGGGGTAAAGCTGAGCTGGGGCTGGAAAAGAGGAATGTGGATGCTGCTCATGCGTGACTCTTATG-----TTTTCTCGGGGAAACAGAAACCTCGTCTGCTTGAAGAGTGCCTAGGACGGGAT--GAATGG-----GCAAGATCTTGCAGATAGTGG-GAAAGACTAGACATGCCAGTCTAGGGAAGGCAGACAAGGTCAGAGCTAATGAATCTACATGGAATTCAAACATCTCTGCCATGAGATTTT----TTCCACCTCAGTGTTCTTTTTAGAGGAACAGAGCTAGAACTGGGCAGTGGTCACAGCTCCAGTCTCTAAC-------------------------------CCTTAACTCCATTTTCTTCCCCCTGACTTCTGCCCTGGGTGCCT s mm3.chr3 101723054 510 + 160674399 TTTGATCTGTCAGGAAGTTTGGGTGATACAGGGAGGAGCTAGTTCACTGGCAAGAAAAAAAAAACATCTGGCTCAAGAGACCAGCTTGTGT-GGGATGGAGGAGATAAAGAAAAGGCATGAGGAGATAAAGGATAGACGCTGAGCT-GTATTGGAACGGAGAAGTG-----------CGTGCTTGGCTCACATGATCATTTTCCACAGGAAAAGATTACTCTTACGTGCTTGAAATGTGTGATGGATGGGTTGTGGATGGCCGAGGCATGGATCCAAAGGTGTTAGTGATAGCCTGGGATTGCC-ACAGAGGAAGGGCTGTTGTGGTTGAGATTGGTGAATGTCAAGAAAGTTCACACACCACTGTGATGTGATTTTTTTTTTTCCTCTCCATATTCTCTGCA-AGGAACATAGCTAGAACTGGAAGGAGTTAGGAGCTGGAGCCTCCCACAGCAAGGAGAGATAAGGCCACTTCCTCCTAGTCTTAATTCC-TCTTCCTGTTCCTCACTTCCACTGTGAGTGCCT s rn2.chr2 189950434 475 + 246339213 TTTGATCTGTTAGGAAGTTTGGGTAATACAAGGAGGAGCTGGT-CACTGGCAAGAAATGAC---CAGCTAGCTCAAGAGACTGGCCTGTGT-GGGACAGAGGAGGTGAAGAAAAGACTCG-------------TAGAAGCTGAGCT-GGATTAAAGTGGAGGAGTG-----------CATTCTTGGCTCACATGATCCATTTCCACAGGAAAAGAGAACTCT--CGTGCTTGAAGCGTGCCAAGGATGGGTTGGGGATGGCAGGAGTATGGATCCAAAGGTGATAGTGATAGCCTGGAAATGCT-GCAGAGGGAGGGCTGTTGTGGTTGAGGTTGATGAATCTCTAAAAAGTTCACACACCACTGTGATGTGATTTT-------CCTGTCCACTTTCTCTGCA-AGGAACATAGCTAGAACTGTAAGGAGCTAGGAGCCAGAGCCTCCCACAGCAAGGAGAGATGAGGCCACTTCCC---AGTCTTAACTCC-TCTTCCT------CACCTCCACTGTGAGTGCCT a score=239079.000000 s hg15.chr13_random 56131 1672 + 414659 CTTCAGACTGAGCCCCATTGGTCTTAACTGGGGTAACAGTTTGC----TTAGACCGTCTGGGCTGAAGTAGTATTGAATTCTGTCTGTGATATTCAG-GCGTTTCTCTGGACCTCAGATAACCTGGGTCTGAGTTGGATTTTACTCTCAAGCCAAGTGTTGTGGTACTCCCTGCAATTAGTATTGTAAAGAAGAGGAAGGATAGTGGGAATGTGCTAATGTGGTTTAGTTGGCTGGGGCCCTCATTCACCCAGGATGTGTCTCTTTTCTTAATTGTTCTCTCAGACAAAGAATTCACTGTTCGGTTGGAAACAGAGAAGCGGCTGCACACGGTGGGCGAGCCGGTGGAGTTCAGATGCATCCTGGAGGCTCAGAATGTTCCCGACCGTTACTTTGCTGTCTCCTGGGCCTTCAACAGCTCGCTCATCGCCACCATGGGTCCTAACGCTGTGCCTGTCCTCAACAGCGAATTTGCTCACCGGGAAGCCAGGGGACAGCTTAACGTGGCCAAAGAGAGCGACAGTGTCTTTGTGCTGAAGATCTACCACCTCCGCCAGGAAGATAGCGGGAAATACAACTGCCGGGTGACTGAGCGAGAGAAAACCGTGACGGGGGAATTCACTGATAAGGAGAGCAAGCGTCCCAAGAACATCCCCATCATAGTCCTCCCCCTCGGTAAGTAGAGAGATGTGCTGCTTTCTTCTCCTTTG------GCTCAGCATCATTTAGGAGAGGTAGGGGGAGAGAGAATAGTGTGGTGAGGGTGAGGGGAGGCAGA---TGGAACCCCCGAGGTTAATGCAGAGCTGGGGGAAAAACCATTGAGCCTCTCTTCCCTGTTGTAGCCCACCTGCCTACATTTAGCAGTCTCCCCATAGCAGAGGATCAGGATCAGGGGTGTCCAGGATCAGGGCAGTCTAGGGCTGGGCATAGGCCTAT--CTGATTGCTAGCAGC-----CCTGTG-CATACACAAGCAGTGCCAGCTCAGCTTGGAGGGAAACCAGGAATCCCAGAAAGCTGTTTGCTCTTGTGTGGGAATCAAGTCCCAGAAGAAGTGGGTAGATAGATGCCTGCCTTGAAATCTCACTTAAGGAGAGCTGGTCTTTTATGGGAGGATTTTAA-ATCATAAAGTGCATTATT---AAGGATTTGCCATCTGGGTT-TTTCAGGTATAAAGGCTGGCATTTCCCTAAATGGCTTTTCCCTGTTGAAATTGTGTTTCTAAAAGT--------------------------------------------------CAGTGGATGGGACCTCTCACATCTTCCTGGAGCATAGTCTTTTAAGCTTAGCTGATTTCT-GAGGCTGCCTCAGTGGGCTCCCAGCCTTCATGTAGACTGGCCTTGTGTGGGTGGGTAGTGGCCATTGCTAGGGATTCCAGAAACTACCGGTGTTTGCTTGTGTTGTGTTTAAACATTCACAGTATCAAGATATTCTTATTAATCTCA-TTCTCCCATAGTTCTGTTTTTAGTAAAGAG--AATAAAAACCTACGATGCTCTGATTTTAAACAAG-TGGTAAAGTTTTAAGACTAATCTTTAACCTTTTCTCAGCTGCTAAAACTATTCTTTCTCTGAGCCTTGTAATAATTTCCTTTAC-tt-----tttatttatatgttttaatatttaaaatatttCTCTTCAAGTGTGAAGTAAAAAGTAGCCATAGGGGTCCTCTTGTTAGTCTTTTCTTCTTTTCTCATCAACTGG s mm3.chr3 101723562 1592 + 160674399 CTCCTGACAGAGCCCTGTTGGTC-TAACAGTGCGAGTGCTAAGCAAAAATAGACAGCCTGGATTTGGCTGGTAT-----------TATGGTATTTAATGGGTTGGCTTGGA-CTCAGATATCCTTGGCTAAAGTTGGATTTT-CTCTCAAGATGAATACGG-AGTCATCACTGTAGTTAGTGTAAGGAAG----GTCAGGGGAATAGG-ATTTCCTGAAGCAGTTTGGTAGGTTGCAGCTCTTATTTGCCCAGAATGCATCCAGTTTGT---TTGTGTTCCCAGACAAAGAGTTCACCGTGCGTCTGGAAACAGATAAGAGGCTGCACACGGTGGGTGAGCCGGTGGAGTTCAGATGTATCCTAGAGGCTCAGAACATTCCCGACCGGTACTTTGCCGTCTCCTGGGCCTTCAACAGCTCACTCATTGCCACCATGGGGCCTAATGCCGTGCCAGTCCTCAACAGCGATTTTGCCCACCGCGAAGCCAAGGGACAGCTTAAGGTGGCCAAAGAGAGTGATGGTGTCTTTGTGCTGAAGATATACCACCTCCGCCAGGAAGACAGTGGCAAATACAACTGCCGGGTGACTGAGCGAGAGAAGACTGTCACTGGCGAGTTCATAGACAAGGAGAGCAAGCGGCCCAAGAACATCCCCATCGTCGTGCTGCCCCTCAGTAAGT--AGAAGTGCGCCACTTACTCGTTTCTGGTGTGGTGACTAGTGACATCGTGGAAAAGT---GGGAAAGACAGTA----GGTATAGG-CAGAAGGGGCAGAATTTG--------GGGGGTGAAGCTGACCAGAGAGG---------AGGCCTCTCCACCC----------------CCTCCATCCCCAGGTCT-------GCAGAGCAGCAGGGGCA----TGTCCTGGGCTGCAG------AGGG-------TACCCATAC--TTGAGCTCAAGCAGCTCAAGCTGCTGTCAGACACCAGCCTTGCCAGCTCAGTTAGGAGTAAGACCAGG---------AAGTCATTTGCACCTTTGGGAGAATTAAATCCCAGAA-------GTGGGCAGAGGCCTGCCTTGAAATCTTACTTAAGGAGAGCTCATCTCTTATGGGAGGACTTGAACATCATCAACTGCATTATTAAGAAGGCTTTGCCATCTGGGTTCTTCCAGGTATCAATGCAGGCCTTTCCCTAATTGTCTCTTCTGTACTGAAATTGCATTGTTAAAAGTCAGTGGGTGCACACAGCGTTAGGTTCATCCTAACACACACATGCATCAGTCAGTGGATGGGCTCTCT---GTCTTCCTGGGATGT-GCTAGGAGAGCTTG---GACCTCTCAAGGCTGTTCCAGGGA---CTCAGCCTCCAGGGGCAAT-GCAGTGTCTGGATGGGTGGTACCCTTTTCT-GAGACTCCAGAGATGAACAGTGTGTATGCATGCCGTGTTTAAATATCCATAGTGTTAGGATTAACTTATTAATCTTC-TTCTCTCACAGTTCTATTTTTAGCAGAAAGTTAATCAAAACTTACAATGCTCTGATTTTAAACAAGATGGTCCAGTGTAAGAACTAACCTTTAACCTTTTCTCAGCTCCCAGGGCTGTTCCTCCTCTCAGCCTTGTCATTGGTTTCTTTACATT-----TTTATTTACACATTTATGTATTTGAAATGTTTCTCTGT-TGTGTGAAGTCTAAAATAG----AGGACG------------------------------------- s rn2.chr2 189950907 1589 + 246339213 CTCCTGACAGAACCCTATTGGTC-TAA--GTGTGAATGCTAAGCAAAAATAAACTGCCTGGATTTGGCTGGGAT-----------TCTGGTATTTAA-GGGTTTGCCTGGT-CTCAGATATCCTTGGCTAGAGTTGGATTTT-CTCTTAGGATGAGTACCG-AGTCTTCTCTGTGGTTAGTGCCATGAAG----GTCAGGGGAGTAGG-ATTTCCTGAAGCAGTTTGGTAGGCTGCAGCTCTTATTTGCCCAGAATGCATC-AGTTTGT---TTGTGTTCCCAGACAAAGAGTTCACCGTGCGACTGGAAACAGATAAGAGGCTGCACACAGTGGGTGAGCCGGTGGAGTTCAGATGTATCCTAGAGGCTCAGAACATTCCAGACCGGTACTTTGCCGTCTCCTGGGCCTTCAACAGCTCACTCATTGCCACCATGGGACCTAATGCTGTGCCAGTCCTCAACAGCGAATTTGCCCACCGTGAAGCCAAGGGACAACTTAAGGTGGCCAAAGAGGGTGATGGTGTCTTTGTGCTGAAGATATATCACCTTCGCCAGGAAGATAGTGGCAAATACAACTGCCGGGTGACTGAGCGAGAGAAGACCGTCACTGGCGAGTTCATCGACAAGGAAAGCAAGAGGCCCAAGAACATCCCCATCGTCGTGCTCCCCCTCAGTAAGT--AGAAGCGTGCCACTTACTAGTTTCTGGTGCGGTGACTAGTGACATCTTGGAGAAGT---GGGAGAAAGAATA----GGTAAAGG-GAGAAGGGGCAAAATTT----------GGAGTAAAGCTGACCAGAGAGG---------GGGCCTTTCCACCT----------------CCTCCAGCCCCGGGTCT-------GCAGAGCAGCAGGGCCA----TGTCTTGGGCTAGAG----ATATGG-------TACCCACACATTTGACCTCGAGCAAC-----CTGGCGTAAAACACCAGCCTTGCCAGCTCAGTTAGGAGCAAGACCAGG---------AAGTCATTTGCACCTTTGTGGGAATTAAATCCCAGAA-------GTGGGCAGAAGCCTGCTTTGAAATCTTACTTAAGGAGAGCTCATCTCTTCTGGGAGGATTTGGAGATCATCAACTGCATTATTAAGAAGGATTTGCCATCTGGGTTCTTCCAGGTATCAATGTGGGCATTTCCCTAATTGTCTTTTCTGAACTGAAATTGCACTGTTAAAAGTCAGTGGGTGCACACGGCGTTAGGTTCAGCCTAATGTGCACACACAGCAGCCAGTGGACAGGCTCGCT---GTCTTCCTGGGATGT-GCTCGGAGAGCTCA---GACCTCTCAGGGCTGTTCCCGGGG---CTCCGTCTCCATGTGAACC-GCGGTGTCTGGATGGGTGGTACCCTTTTCTGGGGACTCCAGAGATGAACAGTGTG--TGCATGCCGTGTTTAAACATCCATAGTGTCGAGATGCTCTTATTAATCTCCTTTCTCTCACAGTTCTGTTTTTAGCAGAAAGTTAATCAAAACTTACAATGCTCTGATTTTAAACAAGATGGTCCAGTTTAAGAACTAACCTTTAACCTTTTCTTAGCTCCCAGGTCTGTTCCTCCTCTTAGCCCTGTAATT-GTTTCTTTACATTTTTTATTTATTTACACATTTATGTATTTGAAATGTCTCTCTGT-TGTATGAAGTCTAAAATAG----AGGAGG------------------------------------- a score=4887.000000 s hg15.chr13_random 57803 80 + 414659 ATTATTTTCTTTT-ATGCTTATTATTATTTTGTTAAAAACCATGCACACACATACCTAATTATCTTTTTTTTCCTGGCAAT s mm3.chr5 27897165 68 - 149719773 ATTCTTTCCCCTT-AT-TCCACCTCCACTTTATTAACAACAACA-------ACACATAGGTGGC----CTTGCCTGGCaat s rn2.chr12 32220697 73 + 46874691 AACTTTCCCCCTTTAT-CCCACTTCCACTTTACTAAGAACAACAC---CACATACATAGGTGCC----CTTGCCTGGAAAT a score=7130.000000 s hg15.chr13_random 57883 36 + 414659 AAATATTTTAATTT----GTTTCATTTTTATGATGACAAA s mm3.chr11 39102104 39 - 122862689 AAATATTTTAATTTTTT-GCTTTATTCTTAAGATGACAAG s rn2.chr12 32220770 40 + 46874691 AAATACTTTAATTTTTTTGCTTTATTTTTAAGATGACAAA a score=420937.000000 s hg15.chr13_random 57919 2641 + 414659 TAATTTTCAAGTTTATTTCCT-------------------CGTTTAAATACAAAGCTAAACCACAAACAGGTATAATCAAGACATTGT-GTCTCATATTTACA--CTCCCATCGGATCCTCTTCCAATTTGCTGACCACTGACCAGGCTAGCGGGGGGCGGGGGTGGGAGGGAAGACTTTCTT----AGGTAACACCGTCGTAAGGCC-CGAGGTGGGGTTGGGGGGGGAATCAAAGAGAGGACAGGCTCTCATACCTGTCTCCATTCACATTTACCTGGGACCAGGGTGGGCAGGAGACACCAGGTCATGGCTCCTGAGCCCCGGCCCCC-TGGACTGAAGGGACAGTGTGTGAGAATCAGTTCTGTGAAGGGCGGGAGGAAACAGCCACCTTATTTCTTCTGCCTTTACAGTTAAGGCGAAAACCTTAGCCCTATCCTTGAT-------------TCCTGGGGGCTGCCGGGCCCTGTGTGCCCCCCTGCACACCTGGGTGTCTTTCTGAGGCTGGCAGCATCGGCTGGGGTCAGGGGTCCTGGGCTCCTAGGCTCACACCTCAGCTCAGTTGTGTCCTTGCAGGAGGACACTGGGTATCTGACAAACACAAAGCCTCGACAGCAGGTCTGGAACTTTCAACCCCAGCAGGATGAGGGGGAATGGGGGTGGATGTCAGGTAAGTAATTTCTGGTCCCACTACAAAACTTTATTTTTGAT-----TAGAGTACCATTCTCAATCTCTTCTACaaaaagca------------aaaa-aaaaa-aagca-----aaaaaaaaaaaaaaaaGCAGCCACTTCACTCACTTCAAGACCTATATACATG-TAAGTTGTTTTCTGTG--tttttttta------------------attatttttaa-----------ttttt------attattatttttaaaataaattCAGTGTTCACATTTCTATAAAGAATTAACCCAGTTTCAGGAAACCCTGCCCCAGCAGGGCAGGTAAGCAACAC-TCTCCCTGCCCACATCTAGTTTGATTTCGCGCCCTGATGCTTCAAGCTGCCCAGAAAAGCGGC-AGCTTGTGGAAGAGGAAATCTATGCCTGGCCCGTGCTTGGGGCCCAGGGCTCAGTAAGCTTTCGAGAAAACAGAGGGGAAGACTAGCTTACTGCAAAAACCTTTTTAAAAAA---TATTCATACACTTCAGTGAGT--GCCTGTCGAGACGTT-AGGAGAACAAGAGCTTGGAAACATCCCGTCCAGGC--CACTGGGAGGCAGC-------ATCTTCCTCACAC---CCCGTCCCTGGATTTCGGGGGTGCAGGGGGAAGGTCCCGGCTCTTCCACTGGAGAAAGGAGACTCACCTAGCTTCCTAGTTCATGTTTGACTATTTCCTCTAAAACCTGTGCTGAGTCTTTGACTGCATGCACGGGAAGCACAAACGTTCGGCTTGTATGCAAAAAAAGTACAAAAACAACTAGAATATAAAAGTTTTGGTAATATAAGGCCATCTGTTCAAGTCCACCTTGGAAACCTGTAACAGATATTTAAATACTACAGTGAAAAGGCATC-TTAATATACTTTTTAAAAACATCTGAAGTAATCCGCTAAGATTAA--------------------------------------------GTGTGTAAAAAAAAATTCAATTCCCTTTGAGGGCACTTTGTCCTTTGAAGAAGGGAAAGTGG------GGCGGGGAGGGCGCGGGGCCCACCGGTTAATGCTTCAGCCATGGGTGGGCTTCAATGGAAGCCTTGCTGCGGTCCCCATAGTCATACAGGGGCTCCTCCCCAGCCGCGATGTCTCG--------GGAGGCGATGAGGATGAGGTGAGGTACGCCGTCGATGTCGTGCAGTTTGGTTTGGCAGTTCCCACGTTTGCTGTGATTGATCAGTCTTCCTAGGCGATTTGTCTCTCTAGTTGCATCCACGCAGTAGGTTTTGCTCAGATACTGAAAATAGTACATGTAGCAGCCCGTGGAAGGGTCCTGTGCGTACAGAGCCTCCCGTTTCTTGGCGTCGGTGATCTCGATGAGGTCCCCGTGGTATTCCACCACAAAGGCACCCCGGGAGAACTGCTTGGTGGCAATCACACCCCTGCCTTTGCCATCGATGAGGTCAATCTTCATTCCTTCTTCCTTCCCACTTTCAATCAATTCATCTATTCTTTTCCTTTCTTCAGACTGCAGCTCGGCTTTGCTCTTCCTGGAGCTCCTTCGGACAGGGTAGAAATCCGT--GTTTGCGATTCTGTTGCGTTTTTCCTTGAGCTTTTTTTCGGGGGTGCTGTTTGCCCTTGATGGGCTTTTTCAGGGCCGGCTTGGCG---ATGGCTGCATTGGTGGAATCACAAGAT-GAGGGTGGAGTTTTTGGAGGTTCTGCTGCTTCAGATTTTTGGTTTGGAAAAGGTACCAGGGGACGTCTCCTGGCGTCTTTGATCTTCTGTTCCTCGGACTTCATGGCGCTCCGTACTGCGTTCCCAGCATTTCTTTTCTCTTCTCGTTTCCTGTAGATTCCGGCTAATGGTTTCCCCTGGCATTTGACTTCGTGATGTGTAACTGAGTTATCTTCCTGAAGGGGGAAACGCATTCCAGAGCATTTGTTCGGGCTCATGTAGGAATAGATCTTTGACTGCCCGGTAAATACGTTCTCCCCGTCGGTGCGGGGCCTCCCCGGGCCCCTCCGCTCCACCATCTCCGGGCCCGGGgccgtcgctgccaccgccgccgccgccgcctccaccgcGCAGGGCTTGGACATCTTCCCGCCT s mm3.chrX 86715372 2475 - 149996094 TAAGTTTCAAGTTTATTTCCTTTTTCTTTTTTCTGTTTGCTATTTAAATACAAAGCTAAGCCACAAACACATACAGCCAAGACATTTTTATCTCACAGTTACACACTCCTGTCAGATCCTCCTCCAAGT--CTGACCACTGACTGGGCTAGCAAAGGGTGCG-------GGAAAGACTTTCTTTTGTAGGTAGCACCATCATGAGCCTGGGAGATGGGGGTGTCGGGGACA--------AGGGTAGGTTCTTATTCC----------------------------------------------------TGGCTCCTGAACCCCAGGCCCC-TGGACTGAAG-----GTGAATG---GTGAGTCCTCTCCAGGGAGGGAGAAGGAAGCCACC----TACTCTTGCTCTCTCA------------------------TCCTGGTT-------------CTCTGCCGGCTATCAA-----------------GTACACTAGTGC----------------CAAGCACGGCTGGTGCCTGATGCTCCGGGGTGCTAGACTGACAGCTGA------CAGCATGTTCATGGGATACCA--GGAGTTCT------------GCCTTGACAGCAGGTAGAGGACTTCCCA-CGCAGCAGAAC--TGGGGTTGGGGAGGGGGTGTGGGCTTAGTAATTTCTAGTCCCACTACAAAACCTCACTTTTGATTAAAATAGAGTATCATCTCAAATCTTCTCTACATAAACCA-CCAACCAAGACAAAAGAGAAAGAATAAACCCCAGAAGAAAAGAAAACCACATTCATTTCACTCCCTTCAAAACCTATATACACGTTAAGttgttttctgtg--ttttttttccatattttctttttt---tttatttttaaaaaatgttttgttttt------attat--tttttAAAATGAATTGAGTGTTCACATTTCTATAAAGAATTAATGCAGTTTCAGGAGA-CCTGCCTTTCTTGAGCAGGAGAACAGTGCTTTTCCCGGCCCGCCTCTAGTCTGACTGTCCACCCTGATGCTTCAAGGTGCCTGGAAAAGCAGTAAGCCCGTGGAAGAGG---TCTGTTCCTGGCCGGGCCTCCAAGCCCCGGGCTCAGTAAGCTTTGGAGAAAGCAGAGGGGAAGACTATCTTACTGTGAAACTTTTGCTAAAAAAAAACATTCACACACATCAGTGTGTATGCCTGTCAGGATGTTGAGGAGAACAAGAGCTTGGAGACATCCCGTCCAGGCTGTGCGTGGGGGGGGCGGGGAGCAGTGCCCTCACACCTGCCTGTCCTTGGACAT--GGGGTACGGGGG---AGTCCTGGCTTTCATCTTAGGCAGAG--------CCCGGCTTCCTAGTTCATGTTCAACTCCATTCTCTAAAACCTGTGCCGAGTCTAACAC----TGCGCAGGAAGCACAAACGTTCAGCTTGTATGC-AAAAAGGTACAAAAACAACTAGAATATAAAAGTTTTGGTAATATAAGGCCATCTGTTCAAGTCCAACTTGGAAACCTGTAACAGATATGTAAATACTACA-TGAAAAGGCATCTTTAATATACTTTTTAAAAACATTTGAAGTAGTTAGCTAAGAGTAA----------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAAAATAAATTCATTTCCCTTTGAGGGCACTTTGTCCTTTGAAGGAGACAGGGTGTCAGGGAGGCAGGGAGGTCACG--------TGGTTAGTGCTTCAGCCAAGGGTAGGCTTCAATAGAAGCCTTGCTTCGGTACCTATA---GTACAGGAGCTCCTTCCCAGCTGCGATGTCTCGATGTCTCAGGTGGTGATGACGATGAGGCTAGGCACGCCATCAATGTCGTGCAGTTTGGTCTGGCAGTTCCCACACTTACTGTGACTGATGAGTCTCCCCAGGTGGTTCGTTTCTTGAGTGGCATCCACGCAGTAGGTTTTGCTCAGATACTGAAAATAGTACATGTAGCAGCCCGTGGAGGGGTCCTGTGCATACAGAGCCTCCCGCTTCTTGGCATCAGTGATTTCAATGAGATCCCCATGGTATTCTACCA-AAAGTCTCCCCGGGAGAACTCCTTGGTAGTGATCACACCCCTGCCTTTGACATCAATTAGATCGATCTTCATGCCTTCTTCCTTCCC-CTCTCAATCAGCT-GTCTATTTTCTCCCTTTCTTCAGACTGCAGCTCAGCTTTGCTCTTCCAGGAGCTCCACCACACAGGGTAGAAATCGGTGAGTTTTCTATTCTGCTGGGTTTTCCCTTGAGACTTTTTCCGAGGGGCCTGCTTGCCCTTGAGGGGCTCTTTCAGGGCTTGCTTAGCAGCGACTGCTACATTGGTAGAATCACATGATGGGGGGGGGAGAATTTGGAGGTTCTGCTGCTTCAGATTTTTGGTTTGGAAAAGGCGGCAGGGGACCACTCCTGTTGTCTTTGCTCTTCTGTTCATCTGACTTCACAGTGCTTCAGATAACGTTCCCGGCGTTCCTTT--TCTTCTCGCTTCCTGTAGATTCCAGCTAATGGTTTCCCCAGGCATTTGACCTCTTGATGGGCAACCGAGTTCTCTTCCTGAAGTGGAGAGCACATTGCAGAGCACTTGTTCGGCCTCCTGTAGGCATAGATCTTTGACTGCCCAGTAAATATGTTCT--------------------------------------------------------------------------------------------------------------------CCT s rn2.chr2 103975493 2484 - 246339213 TAAGTTTCAAGTTTATTTCCTTTTTTT-------GTTTGCTATTTAAATACAAAGCTAAGCCACAAACAGGTACAACCAAGACATTTT-ATCTCACAGTTACACCCTCCTGTCGGATCCTCCTCCAAGT--CTGACCACTGACTGGGCTAGCAAAGGGTGCG-------GGGAAGACTTTCTT----AGGTAGCACCATCATGAGGCTGGGAGTTGGAGGTACTGGGGACA--------AGGGTAGGCTCTTATACC----------------------------------------------------TGGCTCCTGAACCCCAGGCCCCCTGGACTGAAG-----GTGAATG---GTTAGTCCTCCCCAAGGAGGGAGAAGGAAGCC-------TACTCTTGCTATCGCA-----GGTTACAACTGAAGGATCCTCCTGATCTCTGGCTGCTAAGCCTTGCGGGCTGCCAG-----------------GTACCCTAGGGC----------------CAAACACATCTGGTGTCTGATGCCCACAGG-------------ACTGA------CGGCATCTTCACGGGAGACCA--GGGGTTCT------------GCCTTGACAGCAGGTAGAGAACTTCCCA-CGTAGCAGAAT--TGGGGTTGGGGAGGGGGTGTGGGCTTAGTAATTTCTGCTCCCACTATAAA-CCTCACTTTTGATTAGAATAGAGTACCATCTCAAATCTTCTCTACACAAACCAACCAGCCAAGCCAAAA-AGAAA-AATCAACCCCAGAAGAAAAGAAAACTGCATCCATTTCACTCCCTTCAAAACCTATATACATGTTAAGTTGTTTTCTGTGGtttttttttccatttttttctttttaattttttttttac----tattttgttttttttattattat--tttttAAAATAAATTCAGTGTTCACATTTCTATAAAGAATTAATGCAGTTTCAGGAGA-CCTGCCCTTCTTGGGCAGGAGAACAGTGCTTTTCCCGGCCCGCCTCTAGTCTGACTGCCCACCCTGATGCTTCAAGGTGCCTGGAAAAGCCGTAAGCCTGTGGAAGAGG---TCTGTTCCTGGCCGGGCCTCCGAGCCCCGGGCTCAGTAAGCTTTGGAGAAAGCAGAGGGGAAGACTAGCTTACTGTGAAACTTTTGCTAAAAAA---TATTCATACACGTCAATGTGTACACCTGTCAAGACGTTGAGGAGAACAAGAGCTTGGAGACATCCCGTCCAGGCTGTGCGTGGGGGTGGC-------AGCACCCTCACACCGGCCTCACACCGGACGT--GGGGTGCGGGGG---AGTCCTGGCTTTCATCTTGGGCAGAG--------CCCGGCTTCCTAGTTCATGTTCACCTCCATTCTCTAAAACCTGTGCCGAGTCTTACAC----TGCGCGGGAAGCACAAACGTTCAGCTTGTATGC-AAAAAGGTAGAAAAACAACTAGAATATAAAAGTTTTGGTAATATAAGGCCATCTGTTCAAGTCCACCTTGGAAACCTGTAACAGATATTTAAATGCTACA-TGAAAAGGCATCTTTAATATACTTTTTAAAAACATTTGAAGTAATTAGCTAAGAgtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAA-AAATTCATTTCCCTTTGAGGGCACTTTGTCCTTTGAAggaggcagggtggcagggaggcagggaggcCACATGG----TTGGTTAGTGCTTCAGCCAAGGGTAGGCTTCGATGGAGGCCTTGCTCCGGTCTCCATAGTCGTACAGGAGCTCCTCCCCGGCTGCAATGTCTCG--------GGAGGCTATGAAGATGAGGTGAGGCACGCCGTAGATGTCATGCAGTTTGGTCTGGCAATTCCCACACTTACTGTGATTGATCAGTCTCCCCGGGCGGTTCGTTTCTTGAGTGGCATCCACGCAGTAGGTTTTGCTCAGATATTGAAAATAGTACATGTAGCAGCCCGTGGAGGGGTCCTGTGCGTACAGAGCCTCCCGCTTCTTGGCATCGGTGATTTCAATGAGGTCTCCATGGTATTCTACCACAAAGTCTCCCCGGGAGAATCGCTTGGTAGCAATCACACCCCTGCCTTTGCCATCGATTAGATCAATCTTCATGCCCTCTTCCTTCCCGCTCTCAATTAGCTCATCTATCTTCTTCCTTTCTTCAGACTGCAGCTCAGCTTTGCTCTTCCTGGAGCTCCTTCGCACGGGGTAGAAATCTGTGAGTTTTCTATTCTGCTGTGTCTTCCCTTGAGACTTCTTCCGAGGGGCCTGCTTGCCCTTGAGGGGCTTTTTCAGGGCTTGCTTAGCA---ACCGCTACACTGGTAGAATCACATGAC-GGGGGTGGAGTTTTTGGAGGTTCTGTTGCTTCAGGTTTTTGGTTTGGAAAAGGCGCCAGGAGACCTCTCCTGGTATCTTTGCTCTTCTGTTCTTCTGACTTCACAGCGCTTCGGATAACATTCCCAGCGTTTCTTTTCTCTTCTCGCTTCCTGTAGATTCCGGCCAATGGTTTCCCCGGGCATTTGACCTCATGATGTACGACGGAGTTCTCTTCCTGCAGTGGAGAACGCATTCCAGAGCATTTGTTCGGACTCATGTAGGCATAGATCTTTGACTGCCCAGCAAACACGTTCT--------------------------------------------------------------------------------------------------------------------CCT a score=22010.000000 s hg15.chr13_random 60560 167 + 414659 GCAGCCCGGCCAGGCCCATGGCAGCGCGCCCTGCGCCCTAgccgccgccgccgctgcccggccaccaccgctgccgctgccgctgctgctgctgctgccg---ccgccaccagcgccgccgcGGCGCCCC-------------------------------------CTTCCCCCATGGCCGGCAAGGCAgggcccggcacccgcgc s mm3.chrX 86717847 193 - 149996094 GCAGACCGGCTAGGCCCATGACTGCGCGGccagcaccct---cgccctcacctcgacccggccaccaactctgccgccacctctgctactgccaccacct---ccgccatcagcgccgccaTGGCGCTCCTGAAAAGGGCCTGCAGTGCCCCACAGCACC-----TGCTTTGCCCATGGCCGATA--GCAG-TCCCGGAGCCCATGC s rn2.chr10 77088836 191 - 106208427 GCAGCGGGGCTAGGCCCATGGCTGCACGgccggcgccct---cgccctcgccacggccgggccaccagcgctgccgccactgctgctactgctgctgcctccaccaccaccagcgcagcGACAGCGCCCCGGGAAAGGGTCTG------CCAACGGCTTCCGCTTCGCTTCGCCCAAGGCCCGCA--GCCG-----GAAGCCCGCGC a score=776.000000 s hg15.chr13_random 60727 32 + 414659 accgcggcagccccgggccgcccggggcgAGG s mm3.chrX 86718040 27 - 149996094 -TCACCACAGCCCTG----TCCCAGAGCAAGG a score=459.000000 s hg15.chr13_random 60759 22 + 414659 CACGCAGGGAGGAAGGCGCAGG s mm3.chrX 86718215 21 - 149996094 TACTTAGTG-GAAAGGAGCAAG a score=440167.000000 s hg15.chr13_random 60813 3404 + 414659 CACCTAATTATCTTGAAATTCTTTTGTTTCttagccttttccaccctgcaatgcctagcatggtgctttgcatagagtaggtgctcgctgaata-ctgtaCAACTGAAATTATTGAATTGAATGCCCACTGTCTT--TACTATTTTCCTGTCAGTCTGTGCTTGCCTTAACCACGGACTCTCTACTTTTAAATCTGCAACTAATTCCTCATTGTTTTCTAAGGATCAAGTGAAGGGCAGCCACTCTGTTTACTTCCTATATTTTTTGTCCT--AAGATTTCCCCCAACCCTTCTGAGAACTTGTTTGATGATCTGTGGCCTGCTATATTGCTTTTCCAGCAGCATAACTGGGTAGTTAAAGTCCCCCAGCACCGCCAGTACCTGTTCCCAAGGCCAC-TGGGTAAGTCGGTTGAAGAA----------------------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGNTTTTAATGGCGCTTTTTCTCCTAAGAGACCAAAGTGCTTCTGCATATATCATCTCCTTCTCCGCTCCCACCTCTCAAATCCTCGTAGAGGCCAATATGATATCCATCTAATGAATGAAGAAATCAGAGCACCACACAGGAAGTGACAGAGCTGATTGTTCAGTTAGTGGTTGAGCTT-GCA-TTGTATTAGGAAATATTTGCTTCTAACTCCACACCCACCGCCCTGCGCTTAGCCTGTGCTACACCATCAACTTCCTGATTTGAAATTTCATTTGCGAATGTGTACTCAGATTTTTATTAGTTCTGTCCTAGTTTTCACTTAATCCAGAGAGTTTAAAATTGTCAGCTGCCTTTTCTCAGGCCTGGAAATTCT-TGTAAATAGTGTTTAGTGGGCAGTGAGGCACCAGGTCTGTAGTTGCCTTTGCCTCAGCTGCTGTAATAAAATAGCATTTCTTCTTGTAGCCCCACATTCTAACTATGTGGGTTTCCAGGCTTGCTCAAGCAACAGAGCACCACCAAACAGTAGCCCTTTCAATAAATGAGCCAGGACTTGCATAAGCGTCCACTGGGATGACAGTAGGGGATGAGAGTG------------------------------------------AGGTCCTGCAAGTCATTCTCCTGCTTAAGACAAGTGAAAGAATTTTCTTCCTTGATGCTGCAGTTGCCCTTTTAATCCCTTATTTTGAATTGATAACAGTGGGGATGAGTCTTTAATCTAAAGAGGAAT---------ATT--GTTGTTATTAATGATGATG--AAAAATA--------------attacc----------------------tcatctaatcctgtcaatgtcatg-ccctaagaagtaggcactattagtatctccatttttcacatgagaaattg-gagctttggtaggttaaggaagaaccacaggattacagagttaagaagtCTCCAAATCCAGCCCCTTAACCATTAGTGCTATAGATGGTGACTGTTCAGGAGCCTGATTATCTCTATGAATCATCCTGGTATGACTCCTGGGGGAGGTCGCCCTCCTGGGAAAATTGCTATTCCCTGCCCCATCCAGACCTTTTATTTTTCACATAAAACAAGCACATCCAGAATGGCTAGCAGGCA-TCCTCACTATAATAAGAGCTACATTTTGAGGCTCAGTGCTCATCTT---TGTTTCTGCTTGTTGAGG-AAATAAAGGAGAGAAAAGAT----TTGATTCAAATGCATTGTTATGTGTATGTGTGTGTTTTCTCTTGGTAATTGGGTGTGCCTCTTAAAATCTGGGATTTGATTTAATTAATTGGTTTAAATTATTGCATGTATTTAATGTGGGTGGTACCCA-AAAATTGGAGCCAAATTAGTT-----ACTTTGTGTTCT-TTAATACTTACAGACCTTCTGAACTCAATATAGATAATTATACAAAATACTACGTGCATAATTAAAACATATTAGGCTATCTGTGATGTTTATAAAAACAAAGA-GTTATGTGGAATAGTAAAATTAATCATGATCATGATGaccagtttttgaaaacctactatgtgttaggtgaatctatatgcatcatctcatttactttttaatatttaaagaattctacaattaaaggtggctctctacctgtcttacagaagaagaggctgaggcatgtcgagtttaaataat----ttgattgagtgattcagatagttaagcgagcagcagaggctagatGAGACA-------GGGAAGGGAGTGGAATCCTTATCCCAAACTTTTGATTGGCCAAATGTTTCTAGAAAGAGAGCAAAGGAGCCCCAGGGCTGACTGGA-CAGGTGGGAGAGTGGTGGATGATGAGCTGCTGGCTTTGTTTTATTCCTGTGTGTTAATGAAAGAATGAAAGCCTGCTCCTCATGCA--CTGCAAAACCAGACCATCTGTGCTCTATTAT-------TACCCACACT--------------TAAGCACACGTTATCATCCAAATACTTACTGTCAGTTTTTTTTTTTTCGTACTTCCTAA-ATTGTCCTGAAGGACTCAAATGGCACATTATGGAT--GTTCAGCTTTTATTTGACTGCTGTAGTATCGAATGGTAGGAAGAGTGAAGTGAAGTAGGATTTTGGAGTTACTCTTCTTGCTGAAAATTCAACTTGAAAAACCCTGAACTGCCGCTGAATAGATTACCCAATAAATTG---TTTTATGCCCTAATCATCATGCCACTATGTTGTATTTCTTAGGTTCTTATTCAGGCTCAGGTGTTAGAACCTCGTTATCACAGTTCTCTGCACACAGCAAAGAACATCCTAGATTAT---CAGATCTAAAACCACAGGGAGCAATGCCCAG----AACCAGCCAGGGCTTACATCAGCTAG---------------GGTCAGAGTGTTTTTGACCCTCTGAGGCTCACCGTACCTGA---ATATGATTCCATTTGCACCCCTCCTCCTGTTTCCTCTGTGGGGAGGGCGC-TGTGGAGACCATAAAGCCTCCAGGGTGTTTCTCTCTCCCTCTTCCTAGAGAGCAGCATCTCCGTGGGGGTGGCCAGCAATGCCAGCGTCATCCTTGAGGGCGACGACCTGCGCTTCTCCTGCAGCGTCCGCATGGCAGGCAGGCCGCAGGGTCGCTTCTCTGTCATCTGGCAGCTTGTGGACAGGCAGAACTGCCGCAGCAATATCATGTGGCTAGACCGGGATGGCACCGTGCAGCCAGGCTCGTCCTACTGGGAGCGCAGCAGCTTTGGGAGCGTCCAGATGGAGCAGGTGCAGCCCAACTCATTCAGCCTGGGCATCTTCAACAGCAGGAAGGAGGACGAGGGCCAGTATGAATGCCATGTGACTGAATGGGTGCGGGTGGTGGATGGCGAGTGGCAGATTGTTGGGGAGCGCCGGGCCAGCACTCCCATCTCCATCATAGCTCTTGGTGAGTGAGCGGTGGGACTGGCAGTGGGTCTGGCATGGAGACAGCTTCAGTGTCAAACACCTTATCC------------------------------TGA-CTTT s mm3.chr3 101725224 3188 + 160674399 cacTTGAGTAACCTTCAACTC-----TTTCTTGTGCTTT----CCTCGCAAT-----GCATGATGCTTTGCATAGAGTAGGTGCTTGCTAAGTATCTGTATAGTTGAAACTACTGGATTGAATGCCCACACTCTTTATACTATTTTC--------CTGTGCCTGCTGTAATCACAGACTCTGTACCT-------TGAGACTAATTCCTCATTGTTTAAGAAGGATGGCATGAGGGGCAGCCACACTGTTTGCTTCCTGTATCTTTTGTACTAAAAGATTTCCCCCAGCCCTTCCGAGAACTTGTTTGATGATCTGTGGCCTGCTATATTGCTTTTCCAGCAG-ATAACTGGGTAGTTAAAGTCCCCCAGCAGCACCAGATCCTG-CCCCAAGGCCACTTGGGTAAGTCTACTGAAGAACAACAATCAATGGTAATGGTGATAACGCC----------------------------------------------------------------------------------------------------CTGGATTTTAATGGCACCTTTCCTCCTAAGAACCCAAAGTGCTTCTGCATATATGATCTCT----CTGCTCCCAGTCCTGCAGTCCT-GTACAAGCCAGCGTTACATCCATCTTATGAATGGAGATGTCGGAGCACACGCGAGGAAGTGTCTGATCCGGTTTTCCACTTTGCGGTTGAGCTTGGCACTTGCATTAGGGAACATTCGC-TCTAACCCCGAACCCGCTGCTCTGTGCTTAGCCTGGGCCCCGCCAGCAGCCTCCTGATTGGAAATTTCATTTGTGAACACACACTCAGGTTCTCATTAGTTCTGTCCTAGTCTTCATTCAGTCTGGAGGAGATGACCTTGTCGGCTACCTTTTTACAAGCCTGGGAACCTTGTGTAAAGAGT-TACAGTGGGCTACACAGCA------CTGTGTTTGTCCATGCTCCCGCTGCC--------AGAGGGTTTCCC--------------TTCTCCCTA---GGTTTTCCAGGCTTTCTCCA--------------------CATAGCC-------------ATCTAGAATGTCCATAAGAGTCTGCTGTTGTGACAGGAGGGCACATGACCGGTGTCCTGCAGGCCACTCCTCTGTGTAAGACAGACATGGCTGATGTCCTGCAGGCCACTCCTCTGTGTAAGACAGACAGAAAGGTTTGCTTCCTTGGTGCTAAAATTGCCTTCTGAATCTCTCAGCTTGAGGTAAAATCAGCGAGGAAGGATACTGAGTATGATGGCGAACACAGGCTGGACTCAGCGGTAGAGTGTCTCTCTGCAGAGCATTCCGGAAGCCTTCGGTTCAGCCCTCAGTACTGCTCCGCCTTC-CTGCCTCATCCCCTCGGTGTCACAACCCTAAGG---AGGCACTAGCAGGATCTCAACTTTGCACATGATAAATTGAAGGCTCCTCT------AGTAAGAATACCAAAATCCCGCAGTC-GGGAGGCAGTACAGCCAAGCTGCAAACCATTTCTGCCATGAGCAGTGGCTCTACAAGAGCC----------------TTGTCCTGGGC-------------AGGCTGTCCT-----GAAGATTGCTGTCCCC-ACCTTGTCCAGACA-----CCGTTCCTGTGAAACAAGCACA-----------------GGATTGCTCTTTATGACGAAGGCTAGGTGCTGAAGTCTTGTGCTCATCTTTGCTGTTTCTGCCTGTGGGGGAAAATTAAGGGGGAGAAGAATAAAGTAGATCTGAACGC---------TGCA------------------GTAATCGGGTGCGCTTCTC--GATCTGGGGCTTGACTTAATCAAT--------------------------TGTGAATGTTGCCTAGAAAATTGGATCCAAATTGATTATGACATTATGTATTGTGTTAATTCTTATGAGCTTGTTGAACTCAATATAGGTAATTATACAGAATAACATATGCATAATTAAGAAA----GTGTTAGCCATGCTGTTTGTGAGAGCAGAAATATCCTTAAGTATGGT-AAATCAGTCATGACTGTGGGtaccacattttaaacacatactgtgtcctgcac-aatctgtatgcattgtctcgtttgctgtttaatctt-------ttgtgggtttaaaaatagc---------atcctacagaagaaaaagctgaggcttgtagagtttagatcatcccctcaaCTGAG---AACAGCTATCCAAAGGCATGGCAAAGGCTAGACTGAGCT-------AGGGATGGAGTGGAGTTCTTAGCCC-CACCTTTGTTTGGCAGACTG--TCAGGGTAGAGAGCAGAGGTGCCC-CAGGCTGAGTGGGTCTCAGAAGAGAGCAGTGGACGGTGAGCCACTGGCCATGGCTTACTCTTCTCTGTTAACGAAAGCATGAAACTTTGCTCTCCACACACTCTGTGAGACTAGACCATCTGTGCCCCATTTTacacacacacacacacacacacacacacacacacacacacCCCGTCTTCTGAATACTTTCTGAC--------TTTTTTTCTACTTCCTAGTAATTCTCTGAAGGATTCACATGGCACGCTGAGGATGCGTATAGCTTTGGTTTGACTCTTGTAGCTTCAAGTGGTA-GAAGATTGAGAGGCAGTACGGTTTGGGAGT---TCCTCACGCTGAAACTCCAAGCC-AAAAGCCCTGAGCTGCCGATGAGCAGGTCACCC-ATAAATAA---TTTTTTGTCATAAACACCATGTCATTGTATCATATTCT---GTTTCTGATTTACTTTTAGGCCTTAGTACCTCATTATCCCAACCCACTACCCAAAGCAAAGGGCATTCTAGGCTAC---CAGATCT--------AGGGAGCAGTGCCCAGTTCCAACCAGCCAGCCCTTACAACAGCAAGTTGTGGTTCAAAACAAATCAGAGT-TTTTGAGCCCTTTGAGCTTCACTGT--CAGAATCATGGGATTCGGTTTGCACCCTTCTTCCTGCAT-------------------CCTGGAGACGGTAAA-CCCCCAGTGTGGCCCTCTCT-CTTCTCCCCAGAAAGCAGCATCTCCGTGGAGGTGGCCAGCAATGCCAGTGTCGTCCTTGAGGGAGAGGACCTGCACTTCTCCTGCACTGTCCGCACAGTGGGCAGGCTGCAGGCCCGCTTCTCGGTCATCTGGCAGCTCGTGGATAGGCAGAACCGCCGCAGCAATGTCATGTGGCTAGACCGGGACGGCACCTTGCAGCCGGGCTCAGCGTACTGGGAGCGCAGCAGCTATGGAGGCATCCAGATGGAGCAGGTGCAGCCCAACTCCTTCAGCCTGGGCATCTTCAACAGCAGGAAGGAAGATGAGGGCCAGTATGAGTGCCACGTGACGGAGTGGGTTCGGGCCGTAGATGGAGAGTGGCAGATTGTGGGAGAGCGCCGCGCCAGTACCCTGGTCTCTATCACAGCCCTTGGTGAGTGAGCAGTAGGACTG----------TGGC----AGAC-ATTTCCCTGTCAGACTCCTTCCCA------------------------------GGAGCCGt s rn2.chr2 189952569 3155 + 246339213 cacacaAGCAACCTTGACCTC-----TTTCTTGTGCTTT----CCTCGCAGT-----GCATGGTGCTTTGCATAGAGTAGGAGCTTGCTAAATGTCTGTACAGTCGAAACTATT--ACTGAATGCCCACACTCTTTATACTGTTTTC--------CTGTGCCTGCCGTAACCACAGACTCTACACTT-------TGAAACTAATTCCTCATTGTTTCCTAAGGATGGCATGAGGGGCAGCCACACTGTTTGCTTCCTGTATCTTTTGTACTAAAAGATTTCCCCCAGCCCTTCCGAGAACTTGTTTGATGATCTGTGGCCTGCTATATTGCTTTTCCAGCAG-ATAACTGGGTAGTTAAAGTCCCCCAGCAGCACCAGATCCTG-CCCCAAGGCCACTTGGGTAAGTCTACCGAAGAACAACAATCAATGGTAATGGTGATAACGCC----------------------------------------------------------------------------------------------------CTGGATTTTAATGGCACCTTTCCTCCTAAGAACCAAAAGTGCTTCTGCATATGTGATCTCC----CTGCTCCCAGTCCTGCAATCCT-GTACCAGCCAGTGCAACATCCATCTTGTGAATGGAGACGTCAGAACACACGCAAGGAAGTGTCTGATCCGGCTTTTCAGTTTGTGGTTGAGCTT-GCAACTGCATTA-GGAACATTCGC-TCTAACTCTGTACCTGCTGCTCTGTGCTTAGCCTGTGCCCTGCCGGCAGCCTCCTAATTGGAAATTTTATTTGTGAGCACACACTCAGATTTTCACGAGCTCTGTCCTAGTCTTCCTTTGGTCTGGAGGATAATACCTTGTAGGCTACCTCTTTCCAAGCCTGG--ATTCTGTGTAAATAGT-TACAGTGGCCTACAAAGCACCAGATCCATGTTTCTCCATGCTTCGGCTGCC--------AGAGGGCTTCTC--------------TTCTGGCTA---GGTTTTCCAGGCTCTCTCCA--------------------AATAGCC-------------ATCTAGAATGTCCGTAAGAGTCTGCTAGGGTGACAGGAGGGCACATGACTGATGTCCTACA------------------------------------------GGCCACTCTTCTATATGAGACAGACAGGAAGGTTTTCTTTCTTGATACTGAAATTGGCTTCTGCGTCTCTCACCTTGAGGTGAAAACACTGAGGAAGAAAATCCAGACTGATGGCGAGC---------ATCCAGCCATAGAGTGTGTCTATG--GAGCATGCTGGAAGCT-----GTCAGCCCTCAGTGCTGCTCTGCCTTCTCCTTCTCGTCCCCTCAGCGTCACGACCCTAAGG---AGGCGCTAGCAGGATCTGAACTTCGCACATGATAAATTG-AGGTTTGGGT------AGTAAGAATACCAAAAT---ACAGGC-AGAAGGCAGTGCAGCCAAGCTCCCAACCATTTCTGCTGTGGGCAGTGGCTCTACAAAAGCC----------------TTGTCCTGCTC-------------AGGCTGCCCT-----GAAGATTGCTGTTCCC-ACCTTGTCCAGATC-----CCCTTCCTGTGACACAAGCACA-----------------GCA-TATTCACTGTGACAAAGGCTAGGTGCCCAGGCCCTGTGCTCATCTTTCCTGTTTCTGCCTGTGGGGG-AAATAAAAGGGGAGAAGAATAACGTAGATCCAAACGC---------TGCA------------------GTAATCGGGTGCGCTTCTC--GATCTGGGCTTTGACTTAATCAAT--------------------------TGTGAATGGTGCCTAGAAAATTGGATCCAAATTGATTATGACACTATGTATTGTGGTAATTCTTATGAGCTCGTTGAACTCAATATAGGTAATTATACAGGTCAACATATGCATAATTAAGAAA----GTGTTAGCCATGCTGTTTACGGAAGCAGAAATATTCCTAAGTATGGTAAAATCAATCACGACCGTGGGTACCACATCTTAAAAACATACTGTGCGCTGCAC-AATCTGGATGCATTGTCTCGTTCGCTATTTCATCTT-------TTTGTGGGTTAAAAATAGc---------atcttacagaagaaaaagctgaggctcgtagagtttaaatcat-ccctcgactgag---atcagccatccgaaggagtgacaaaggctagactcAgccgggggggggggggggggcggAGTTCTCATGCC-CACCTGTGTCTGGCAGACTG--TCAGGGTACAGAGCAGTGGTGCCCGCAGGCTGAGTGGATCTAAT--------------CGGAGAGCCACTGGCCACGGCTCATTCTTCTCTGTTAACGAAAGCACGAAACTTTGCTCTCCACACGCTCTACGAGACTAGACCATCTGTGCCCCATTTTCCACACATATGCACATG------------------------GCATCTTCCAAATACTTCCTGACA-------TTTTTTTCTACTTCCTAATATTTCCCTGGAGGATCCAAATGGCACACTAAGGATGTGTAGAACTCTTGTGTGACTCTTGTAGCTTCAAGTGGTA-GAAGATTGAGGTGCAGTAGGATCTTGGAGT---TCCTCATGCTGAAACTCCAAGCC-AAAAGCCCTGAGCTGCAGCTGAGCAGGTCACCC-TTAAATAATTTTTTTTTGTCCTAAACACCATGATATTGGATCATATTCTCCAGGTTCTGATTCAATTTTAGGTCTTAGTGCCTCATCATCCCAGTCCACCCCACAAAGCAAAGAGCATTCTAGGCTATCTACAGATCT--------AGGGAGCAGTGCCCAGTTCGAACCAGCCAGACCTTACAACAGCAAGTTGTGTTTCAAAACAAATCAGAGTGTTTTGAGTTCTTTGAGCTTCACTGT--CAGAATCATGGGATTCGGTCTGCACCCTTCTTCCTGCGTCATCCATGAGGAGGGCGCACATGGAGACCGTAAA-CCCCCAGTGTGGCATTCTCT-CTTCTCCCCAGAAAGCAGCATGTCCGTGGAGGTGGCCAGCAACGCCAGTGTCGTCCTTGAGGGTGAGGACCTGCACTTCTCCTGTACTGTCCGCACGGTGGGCAGGTTGCAGGCCCGCTTCTCTGTCATCTGGCAGCTCGTGGATAGGCAGAACCGCCGCAGCAATGTCATGTGGCTAGACCGGGATGGCACCGTGCAGCCGGGCTCATCGTACTGGGAGCGCAGCAGCTATGGAGGCATCCAGATGGAGCAGGTGCAGCCCAACTCCTTCAGCCTGGGCATCTTCAGCAGCAGGAAGGAGGACGAGGGCCAGTACGAGTGCCACGTGACAGAGTGGGTTCGGGCTGTGGATGGAGAGTGGCAGATCGTGGGAGAGCGCCGCGCCAGTACCTTGGTCTCCATCACAGCCCTTGGTGAGTGGGCAGGAGGATCA----------TGGC----AGAC-GCTTTCCTGTCAGACTCCTTCCCATCTTATTGGCATTCTGGTTGGAgggtctggggagacat a score=159112.000000 s hg15.chr13_random 64217 2123 + 414659 TGTCTGTCAGAGTTCTAGCAGGAAACTATGGCCAGTCTTT-----TACCTATAGA--------------------------------------------------------------GTTTGAAG------TACTTTCCTTTATATCTATTTTGTTTCTTATAAGGGT-TTAATTAA-------TTAAGATAGTGCTAGCAGGGACTAAGGGACCCACAGTGGATGATGGGGCTCCTGAGGGATAGCAATAGCTGGCAGCTGTGACTACTCCTAGTCTGGCTGGGAGAGAGTGATGTTATCAGAACTCTATCCAGGTTAGTGAAGCCACCCAGCCATAGTGGTGGCCCCAGGTGGAGGAGCATGGCCACTGCCAGCCTGGCCTTAAAGAGAGCAGAGTGGCTGAGCACTGTGTGGCATGTCTTTCC----------------TGCCCTGCTGTTCAGGGGCCAGCCTTCCTGAAAGAGAGCAGAGAAGGGTATAAAATTATCTgttgtcatttatttagcatttactatgttcctggctaatccttaacacttaagcttagttgtcccattgaatccccacctagccaagtgacagacactttcattttatggaggaaactgagactgagacacattaaatactttgcctaaggctaGAAGTTTCTACTACCTGATGGGGCCCATACCTAACAAAGCTATTCCCTCATTAGCATGGAATGAAAAGATACCTTGAGATTTGCTAAAACCAAGGAAGATTAGATTTGCTTCTCATGGGGT----AAAGAGGCTTCTATCAACATTTATCTGCTTGGATATAATCAGTATATTAGATTTTAAACGACCAGTCTGTGACTTTGCTGGGAAAGAAACTTGTTATGTCAGGTCTTCCTGTTTATCAGGAGACATTGGTTGTCCTCA-----GCAACTTTATGTC-CCAC--TCCC-----TGGGACT----GTGTCACCACCTTCC---------TTGCAGGTCGGGATGG----------------------------------------TGG---TGCTTTTGGATACTTCC--------------------------AGTAAAGATGGCAGCCCCGAGTGGTTT--------------------------------------------------------------------------------------------------------TTGTCCTTAA-----------------------------------------------------------------CAGAGTCCT------------------CCATTTTCTTA------------------------------------------------------------------------CCCCTCTGAGATTAGAATTACATTTGTTTTCT-AAAGCTTAATCCTAAAGATTGACCTGCTTTTTGCAGTAATTATATGGCTCAGATTTCTG-TCTTAGAAACTTCCTCCAGTGATTGCGTTTCCTGATCAGCTCAGTTCCTGTGTCCATACTCAGCACCTGTGTGGACCCAGTCAGATGGAACTTGGGGGACAAATTTTGGATGTCCAGTACTGGTGTTTTTTTTTTTTAACCATCCTGGAAGGTTAGGAATGTCCAATGAGTGATTAGAGTTAGTGAGGATTGTTTCTCTAGAAGTAA-TTTATGGTATCAGGTTATC--CCCTGAGTTTTTTCTT--ACTCACCATATGTCTGGTGGTTCTCACAGCCAGGG-GCACTGAGGAGCTCTGCCCTGGGATCTGGAGGCCAGCACTGTTCACCTGATCTCCAC--CGCTGAGATACCTCTGGCTACAGCCATAATCAGGTGGCCCAAAGGACTGAACAAGGAAGAATGGGAGGGCACTCTAGACTAATTAAGGTTGTCTTTTCAGTCTAAAGTTAACAATGAC-ACACATGAATTTTCATATCAGTATAATTTGATGTGGGT-CCCAAATGTACAATGGGCCATTATGGCTGTTCAGTTAGAGCAGCT---TGGGTGCTCTG--TGACTGTGG---CATGTGCCTGTGTCAGGACTAGACAAAGTCATTTGC---TTGGG-------------------GAAGCTCTCTCCCCTTCAGGTGTGAGGCCAGGAGCACCTGGTGTGGGTCCTGTCCCTGAGG-TTCTGTCCTACACCACCCTCATGCAACACCTACTACACACAGGTG-----CACAGTGACAGTCAGAGGTGCTTCATGTTTAAGGATGGACCTCCGTGTCATAAACTTTTTTAAAAGGTATATAGAGATAGCTCATGAAATCCAAATCAAAGGTCCAGAGTTTTCAGCAAATTGTACCTACCTATTTGCCAACTTAACCTCACCATAGAAAGCCAAAAGA-----------------------------TTCATCCTGTGGCCAGTCTTTCACATTACAGAATTTAAAGTACttttttaaaatttctatttcattttttaacaaaatatttaacaaaatataGTATATCTCatgtgccaggtactatttgtaatatttataaacactgatttatttaatcttcacagagactcattttacagattggaaaacagaggcagagagaagtta------------agtaa s mm3.chr3 101728671 2119 + 160674399 TGTACCTACAAACATGCATATACACATATGTGCATTTTATACACACACACACAGA--------------------------------------------------------------GCAAAAAG----ACAAATTCTGATTAGACATG-ATAGTATCTTCCAgagggtttcactgaagggac-atatggtaatatgcgcagggttgagggaactaatagcagacggtgaagc-acaggggactagtgacattggggagctgt---------------------------------------------------------tgccaccaaccagc---------------------aggagcatggCTGGGACAGCACTGGCCTGGAAGAGGG--GAGTGACTGGGTAC--AGGAACAAGTCTCTCCAGTTCACAGGGTGTCTTGCCCAGCTGCTCACAGCTCAGCCCTGCAAAAGTGTGGCTGAACAGGATGGAGA---TCCCATTGCCAATGATACAGCATTTGGCCCACGCCTACCTGACTCTTAGCACTC-AGCTCGGTTGTTCCGTTTAGGC-----------------------CTGTGTTTTTA-----------------------------------------------------TCTCCTCCCCTGTAAAGCCCCCACTTAAGAAAAACATTTCCTCATTTGCCAGGGA-GTGAAGATACCTTGAGGTTTGCTAAAACCAAGTAATGTTAGATTTGCTGCTCACAGGCTATCCAAAGAGGTTTCTGCTCCTG-TTATCTGC-CAGATGCAATCAGCCCATTACATTCTAAAAGACCAGCCTGCTACTTTGCTGGGAAGATAACTTATTATGTCAAGCCTT-CTATTTGTCAGGAAGCTTTGTCAGTCTCCATTCG-CCCAGACTCTGTCACCACCTTCCCTCAGATAGGGCTGGCGGTGCTGTCGCCTGCCTAATAAAGATGGCAGCCCAGGGTAGATCTGCCCAAGA-CCTCGTCAGTGTTCTCCCTTCCAAGATTGG-GTTGCTTTTGCTTAATTCCCAAATGTCTGTTTTCAAATGCATGGTGGTAAAAACATTATCCACGTGCTGTTTAAACCCCCCACCCCATGCCAGAGCTTCCCTCCAGCTGCTTCACAAAGGGGTAAGTCGCACACCACTGTTAAAGAAATCCTTGAGCTTTTCAGGGTAACAAGGTGTTGCCCCCAAGCAAGGCATGCAGTAAAAACAAAGAAGAACAAGCATGCAAACGGTAAGAAAACA-------GCTCCGGACCCCTGGTGTTCCGTTATGGCACCCATTTGGTTAGACTGGCTTGCTGTTGAGGACTTGGGACGGACATGGTGTCATGT--AAATCCAGATGCAGCCTCTGTATCCTCCCCCACATCATTGCGATTATATCTGCTTCCTGAAAGCTTAGTACCAAAGAAGGGCTTGCCTTGTGTAGTCATTAGGCAGCTCAGATTCCTGTTCCTAGAAACTCCCTCCAGTGTTG-------------AACATAGTCCCTGTGCCTGTGCTTGGCGCTGCTGTGGACCCAGGCAGG-GGAACTTGGGAGATGGCTCTGAGAT--------ACGCTGCATATGGTTTTTCCCCATCCTGGGAGGTTAGGGGTACCCAGGGA------AGGGTGATTCGGGGTTGTTTCCCTGGAAGTAATTTTACGGTTTCAGATTATCTGTCCTTGGCGTATTCTTAAATTCCATGCGTGTCTGGCAGCTTCCACAGCCAGGACGTGCTGAGTAGCACTCCTCTGGGACCCTGAGGTTAGCTCTGCTCACCTGACCCCCTCTCCATTG-----CCTCTG--------------------------------GAACTAGGAGCAA--GGTTGTCTCACTAGTCC--------TAATCTATT--GTCTACAGTAAGCAATGAACACTCACGAGTTTCTGGATTGCTTCTATTAGGCATGGAT-CCC--------------------------CTCAGCGGTGACAGCTATGTGGATGAACTAATAGGCCACAG---ACTGTGACTGTGGAGGGAC--ACCTTGGCCATGTGCAGTCTGGT-----------------------CTGTGTCCACTT---ATGTAAAGTCAGGGATACCCAGTGCAGGGCCTGTCCCTGGTGTCCCTGATCTGTACGAAACTTTTGGCACATGTACCACACACTACTGACCATCACGGC--CACACAGGGCTACT-------------------CTCTCTTCAT----TTTTTT-------------------------------GAATTGAAGATCCAGAGAGTTCAGCAAAATGTGCCAACTTATTCTCTAAT---AATTCCCCTGGGAAATACAGAAGA-----------------------------TTAATGTTTTGTCC--TCTTT---------------------GTTTCTTAAAC-------TGTATTTTCTAG--------------------ACTACATATAATGCACCACACAC--------------------------TCATTTAACCTTCACAAGAACTC--TTTACAGAAAGGAAAACATAGGCAGAGTGGACTTAGAGCATTTGTTTAATAc s rn2.chr2 189956053 2264 + 246339213 gacacataCAAACAGGCATGTACACATATGTGCAGcacacacacacacacacacaagtacacacacacacacacacaagtacacacacacacacacacacacacacacacacacacTGCAAAAAGACAAACAAATTTTGATCGGAGATA-ATGGTATCTTCCAGAGGG-TTCATTGAAGGGGCTCTGTGGTAGTATGCACAGGGTTGAGG------------GATAGTGGGGA-ATGGGGGACTAGTGACATTGGTGGGCTGTTACCACCCCTGG---GGTTGGGTA----------TGTCAAGATTCTAGACAGACTGATGCCACCAACCAGC---------------------AGGAGTATGGCTCGG-CAAAATTGACCTGGAAGAGGG--GAGTGGCTGGGTCC--AGCGACAAGTCTCTCCTGTTCACAGAATGTCTTGCCCAGCTGCTCACAACTCAGTCCCCCAAAAGTGTGGCTGAACAGGATGGGGA---TCCCATTGCCAATAATACAGGATTTGGCCCACGCCCGCCTGAGTCTTAGCACAC-AGCTCAGTTGATCTGTTTAGGC-----------------------CTATGTTTTTA-----------------------------------------------------TCTCCTTCTCTGTAAAGCCCCCACTTAAGAAAAACATTTCCTCATTTGCCCGGGA-GTGAAGATACCTTGAGGTTTGCTAAAACCAAGTAATGTTAGATTTGCTTCTCACAGGCTATCTAAAGAGGTTTCCGCTCGTG-TTATCTGC-CAGATGCAATCAGTCTATTACATTTTAAAAGACCAGCCTGCTACTTTGCTGGGAAGATAACTTATTATGTCAGGCCTT-CTATTTGTCAGGATGCTTTGTCAGTCTCCATTTGCCCCAGACAATGTCACCACATTTCCTCAGGTAGGGCTGGTGGTGCTGTCGCATACCTAATAAAGATGGCAGCCCAGGGAAGATCTGCCCAAGACCCTCATCCATGTTCACCCTTCTGAGATTGGAATTGCATTTGCTTAATTCTCAAACATCTGTTTTCAGTTGCATGGTGATAAAAACATTATCCATGTGCTGTTTAAA-CCCCCACCTGGTGCCAGGGCTTCCCTCCAGCTGCTTTGCAAAGGGGAAAGTTACATGCCACTGTTTTAGGAATCCTTGAGCTTTTCAAGGTAACAAGGTGTC-TCCCCAAGCAAGGCATGCAGTAAAAACAAAGAAAAACAAACGTGCAAACAGCAAAAAAACAGGAAGCGGCTCCAGACCCCTGGTGCTTTGCTATGGCGCCCATTTGGTTAGACTGGTTTGCTGTCCAGGACTTGGGACAGACACAGCATCAGGTAAAAACCCAGAGGCAGCCTCTGCAGCCTCTCCCACTTCATTGCGATTATATCTGCTTCCTAAAAGCTTCATACCGAAGAAGGGCTTGCCTTCCGTAGTCATTAGG-AGCTCGGATTCCTGTTTCTAGACACTCCCTCCAGTGTT--------------ATCATAGTCCCTGTGCCTGTGCTTGGCACTGCTGTGGACCCGGGCAGA-GGAACTTGTGGGATGGCTCTGGGAT--------CTGCTGCATATGGTTTTCCCCCATCCTGGGAGATTAGGGGTATCCAGGGA------AGGGTGATTCAGGGTTGTTTCCCTGGAAGTAATTTTACGGTTTCACGTTATCTGTCCTTGGAGTATTCGTAAATTCACTCCATGTCTGCCAGCTCCCACAGCCAGGACGTGCTGAGTAGTACTCCTCTGGGATCCTGAGGCCAGCTCTGCTCACCTGACACCCTGT-CATTG-----CCTCTG--------------------------------GAACTAGGACCAA--GGTTGTCTCACTAGTCC--------TAGTCTTTT--GTC-----TAAGCAGTAAA----CACAAATTTCTGGATTGCTTCTGTTGGGTGTGGATCCCC--------------------------CTCAGCGATGACAGGTGTGTGGATGAACTAATAGACCACAAACCACCATGACTGTGGAGGGAC--ACCTTGGCTATGTGCACTCTGGTTTCTGCACTGTCAGGCCTGGGCACCATGGCTTCGT---GTGTAAAGTCAGGAATACCCAGTGCAGGGCC------------CCCTGGTCTGTACCAGTCTCGTGTCATGTGTGCTACACACTGCTGACCCTCACAGC--CACTCAGTGCTGCT-------------------CTCTTGTCCT----TTATTT-------------------------------AAGTTGAAGATACAGAGAGTTCAGCAAAATTCGCCAACTTATTCTCTAAT---GATTCCCCAGGGAGATCCAGAAGATTCTGTGCCTTGTGTTTTTCCTGCAGAGTTTAATATTTTGTCC--CCTTT---------------------GTTTCTTAAATAAACTA-CATATTCTGTAG--------------------ACTATATATGATGTACCACACAC--------------------------TCAGTTAACCTTCACAAGAACCC--TGTACAGAAAGGAAAACATAGGCAGGGTGGACTTAGAGCATTCGCTTAATAc a score=202852.000000 s hg15.chr13_random 66340 1759 + 414659 ctttaa----tgtcactcagctgggacgtatc-------aaaggcttggctgctggctccagagtctagacctttaaccattgtgttatg----ctTTCCATGGGTAAAGCAACCTAAAAAggcccctggaatcagttacatgtggttg------gagactaactctgtcattgacttaccaaatgcttgatattgggcaatttatctaacctctctctgcatcagtttctacgtctgcaggaagagatgacaagcctgcc----tgttctacaaggttgttttggggattcagtggagcatgatgagagcaaagcagttggca---ccatgcttgcacctagatagtgctcaataaatactggctactgttAGCTTTATGATTGTGATCAATGTATGAATATTAAGCAGTATTTCCAGGCTGAAGGAACTCTGAGGTACTCATATTGAGGAGTCAGTATTAGAGCTTAGCAGTGCTGCCCATTCAATAAGGAATATTGAGAGACCCACAGCCGCTGAGACTGCAGAACCCTGCATTTAGGACAATTGTCCCACCCCACTGGAGGTCCCCA--------------------CCTGC--------------------TCTGTTCTTGGATTTCATGAGGGACGTGAGAAAGGGACTGGAGGCCGACTCCATCTGCTTCCCTTCTCAGCAC-CAGTGCACTAAGGGACCAGGAAAAG------AGGTGTTGGGACTGTGTGGTTGTGTTTTCCTCCTGCGCAAGGAGGAAATTGG--CTTTGGGG----TTTTCTTTTCCTGTTTTCTCATGGAATCTCAAGATTTCTAGGAGCAACCCTGCCTACATGCAATCAGTCCCTGAGAG--GATTGTGATGTCTAATTCCAGGGGAGGA------GCAAATGCACG--AGGATCTCAT-------TGGGAAGGGTTAGGCTAGCGCTGCTCAGGGGGAATTGTGGTGGGCCT---TTCTTTGGAGTCTTGGAAACTCTTGGACTGGGCCTCAGCAGGATACTAAAAGCAACA--------CTAGCCTGAGAGCTCAAAAGGGGCCCCGAGAGCCTCTGCTCCACACTGCTTGCTTTGCCAGCTGCCCCATTGCTGATGTCATACTGCCCTGAGAAAGCCACATGCCTCCTCTGGTTGAATCTCTCTGCTCTCTCTCCAGAAATGGGCTTCGCAGTCACAGCCATCTCCCGGACACCGGGGGTGACCTACAGCGACTCCTTTGACTTGCAGTGTATCATCAAACCCCACTACCCTGCCCAGGTCCCCGTGTCAGTGACATGGCGGTTCCAGCCGGTGGGCACGGTGGAGTTCCATGACTTGGTGACCTTCACCCGGGACGGAGGGGTCCAGTGGGGGGACAGGTCCTCCAGCTTCCGAACCCGAACTGCCACCGAGAAGGCTGAGTCCAGCAACAACGTCCGCCTAATCATCAGCCGAGCCAGTGACACGGAAGCAGGCAAGTACCAGTGTGTGGCAGAGCTGTGGCGGAAGAACTACAACAACACCTGGACGCAACTGGCGGAGAGGACCTCCAACCTGCTGGTGATCAGGGTGCTGCAGCCAGGTGAGTGCTGA------------------------GGACCTGTGG----------------------------GCTATGTGCCCATGCT---------GCCTGAGCAGA----------CGTGAGGGAAAAAGAAAAGTGTG------CAT-------GGAGCCCTCAGCATCACTTCCCCCTTTCCCAGCtcttc--atttagagacat-------tgcaaatcaataggaagttttaagaatcatgc---agtg----gacac--------ttgtatttcctttccttgatagcc-agttgtt-----------------------gtctgacggcatttgttttcttcctctgtgtg-tatgtttgttgttgt----ttttgagccattggagggaaagctgtggacattggg s mm3.chr3 101730992 1807 + 160674399 GTTTAG----TGTCATAGAACTAGTAGGTGTCTCGAGACGAAGG------TGACGGCTG-GGAGTTGATGCCTTTAACCA--GACTGATG----GTTCCCCTGGGCAAAGCAGCCCCAGGcggggcctagagtgaggtgcacagggataggtctgtagcctgactctaccatttgct------atacttaacatcaggcaatttttttgccttctctgtaca-------------ctgca-aaagggataacaagcctgcctGTTTGACCTACAAG--TGTT-----GACTTAGTAAGAGGGGATGAAAGCAGAGCCTCCAACA---CTAGGTTTG---GCATGTAGCATT-CGCACATCCCAGCCACTATTACTTTTATGATCATAGCCAGTG--------------TGCTCATCCACACTGAAGGGGCTGTG----------AATCAGAGGTCAGAAC----GCT------CGCTCCCCAGTCAGTAAGAACTATT------------CTCACTGAGACTTCAGGGCTCTGAGTTTAAGGGTAATGCCTCACCC-----CAGGTATCCATCCACTAAAGACTAGGCTTTCCTGTTGTATGTCCCTTAAAACCTATCTAAACCCGGATTTTGTTGGGGAATTTGAGGAGGGGCTGGCAGCG-TCCCCATCTG---CCTGTTTCAGGATGCCATGCGCTAGAAGACCAGGGACAGGCATCTGGGTGTTGGGTGCGTGCAGT--------------------GAAGGAACTTGGCTTTTTGGAACCTTTTTTTCCCTCTTGTTTTTGCACAGAATTCTGGGATTGCTAG-------------------------------GAGAGA-GGTTCTGGTGTCTTACCCTGGAGCAGGATGTACTGTGAACCCACAC-AGGATCTCAGGTCTCA-TGGGAAGGAGCGGACCTGGGTTATTCAG--------AGCCTGGACCC-------GTGAAGTCTTAGGAACTGTTGTGTTGGGCCTCAACACAA-ACCCAAAGTAATAGCTTCTTTGTGACAAGAAGGCTTAAGAA----CTCCCCAGCCTCTGCTCTG-ACTGCTGGCTTTGCCAGTGGGCCCATATTTGATAGCACACTGTCCCAGAAACGCCAGATGCTGTCCCTGGTT-CATGTCTCTGCTCTCCCTACAGAAACGGGCTTTGCAGTCACAGCTATCTCCCGGACACCAGGGGTCACCTACAGCGACTCCTTTGACTTGCAGTGCATCATCAAACCCCACTACCCGGCCAGAGTCCCCGTGTCTGTGACATGGAGGTTCCAGCCAGTGGGCACAGTGGAGTTCCATGACCTGGTGACCTTCACACGAGATGGAGGGGTTCAGTGGGGGGACAAGTCATCCACTTTCCGAACTCGGACTGCCATTGAGAAGGCTGAGTCCAGCAACAATGTCCGCCTGAGCATCAGCCGGGCCAGTGACACAGAGGCAGGCAAGTACCAGTGCGTGGCAGAGCTGTGGCGAAGGAATTACAACAATACATGGACAAGGCTGGCGGAGAGGACGTCCAACCTGCTGGAGATTCGGGTGCTGCAGCCAGGTGGGTGCTCAG--CTCAGGCTCCAGGGCCTCTCAGGGCCCATGTGTGTCTGCACAGCATAGTAAGGCACATGGGTGTGTGCTTACACTCTCCAGTAGGCCTGTGAGGATGCATGCCTATGTATTGGGAGACATAGGGTGTGTTCTTAAATGACACAGAGAGACTTGAGGAT---GTCTACTTATGTGATCTCATTAGACTCAGGGACGTGCGCTCGTAGGACACAAGGAGGCATACAAGGATGCATGCTTATGTGTTATGAGAC--------GTGTATTTATATGACACGAGATAC-AGTGCATATTCCTACCTGACACAGTATA--ATATGAGAGCATGTTCTTCCATGATACATGAGACATGTCTGCTTATGTGGCATGGTAAGACATGAAGGGTATATGCTTGCATGACTGG s rn2.chr2 189958515 1830 + 246339213 GCTTAGTGTCTGTCACAGAGCTAGGAGGTGTCTGGA---GAAGG------TGATAGCAGCAGAGTTAATGCCTTTAACCA--GACTGATGGTTCGTTCCCCTGGGCAAAGCAGCCCCAGGCAGGGCCTAGAGTGAGGTGCACGTAGCTA-TTCTGTAGCCTGACTCTATCACTT----------------ATATCAGACAGTTTGTTTGTCTTCTCTGCACC-------------CTGCA-GAAGGGATAGCAAGCCTGCC----TGACCTACACA--TGTT-----GATTTAGTGTGA-GGGATGAAAACAGAGCCTCCAACAGCCCTAGGTTTG---GCATGTAGCATTCCGAACAGACTGGCCACTGTTACCTTTAT--TCATA---------------------CTCTCGTCCACACTGAAGGAGCTGTG----------ACTCAGAGGTCAGGA--------------TGCTTCCCAGCCTATAAGGAACATT------------CTCGTTGAGACTTCAGGGCCCTGGGTTTAGGGGTAACACCTCACCCCACCTCAGGTGTCCA----------ACTAGGCTTTCCTGTTGTATGTCCCTTGAAACCTATCTGAACCTAGATTTTGTTGGGGAAGAAGAGGAGGGGCGAGCAGTGTTCCCCACTTG---CCTATTTCAGGATGCCATGCACAAGAAGACCAGGGACAGGTATCGGGGTGTTGGGTACATGCAGT--------------------GAAGGAAATTGG--TTTTGGAA-CTTTTTTTTTCTCTTGTTTTTGCACAGAATTCTGGGATTGCTAGTAATGATCCTGACTGTGCGGTATGAGTCACTGAGAGAGGGTTCTGGTGTCTTGCCCTGGAGAAGAATGTACTGTAAACCCACATGAGGATCTCAGGTCTCACTGGGAAGGAGTGGGGCTGGGCTATTCAGAGGAA--CAGCCTGGACCCACTTTGTGTGAAGTCTTAAGAACTGTTGAGTTGGGCCCCAACACAGTACCCAAAGTCAAAGCTTATCTGTGACAAGAAGGCTTAGGAA----CCTGCCAGCCTCTGCTCTG-ACTGCTAGCTTTGACACTAGGCCCGAATTTG-TAGCATACTGCCCCAGAAAAGCCAGATGCTGTTTCTGGTT-CATGTCTCTGCTCTCCCTACAGAAACGGGCTTTGCGGTCACAGCTATCTCCCGGACACCAGGGGTCACCTACAGCGACTCCTTTGACTTGCAGTGCATCATCAAACCCCACTACCCAGCCAGAGTCCCCGTGTCTGTGACATGGAGGTTCCAGCCAGTGGGCACAGTTGAGTTCCATGACCTGGTGACCTTCACACGAGATGGAGGGGTTCAGTGGGGAGACAAGTCCTCCACCTTCCGAACTCGGACTGCCATCGAGAAGGCTGAGTCCAGCAACAATGTCCGCCTGAGCATCAGCCGGGCCAGTGACACGGAGGCGGGCAAGTACCAGTGTGTGGCAGAGCTGTGGCGGAGGAATTACAACAATACCTGGACGAGGCTGGCGGAGAGGACTTCCAACCTGCTGGAGATTCGGGTGCTGCAGCCAGGTGGGTGCTCAGAATCCAGGGCCTCGAGGCTCTC-GGGCCCATGTGTGTGTGCAAGGCATGGAGAGACA----AGTGTGTGCTTACGTGATATGGTAGGCCTGTGAGGATGCATGCTTCTGTGATGGGAGACATAGTGTGTGTTCT--AATGAC----AGAGACACGAGGGT---GCCTGCTTATGTGATCTAATGAGACACAGGGATGTATGCTCAAATGATGTAATGAGGCATACAAGAACGCATGCTTATGTGATATGAGACATGAAGATGTGTCTTCATATGACACGAGATACAAGTACTTTTTCTTACCTGACACAGTATAACATATGAGGGCATGTTCTTCTATGATACATGAGCCATGTCTACTTATGTGGCAAGGTAAGGCATGAAGGGTATATGCTTGAACGACTGG a score=527.000000 s hg15.chr13_random 68106 344 + 414659 -------cccctaagtacttcagcatgtaactcctaagaacCTACCCCTATCACCTACatttccccagttgtcccaatcatgccctttatttttccctttcagattaggatccaaccagggatcacacatcacatttgttatcctgtctctttagactcctttaatctagaacaattccctaacctgtgtgtttgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtctgtagaca-tggacatttgtgaaatgcacaggccaattgttttaaagaaagcccttTTctttacttaacctcatctcctgtaatcctcatacaattatgtggaagtgatatcatt s mm3.chr3 101732810 223 + 160674399 GAGGGCATTCATAAACGCTCTAGCTAATGAC-cctatgaacagg------------acattgtccca-----cccaaccacaaca--------ccattgtca----------cactcaggaat------ttagcattggtat--agtctcattaccc--------------aCAATCCCCCA---TTCG-ATCAGCA-------------------ATGTG---------------CACCCCACC-CAACCACTCAAGGGCGCCA----ACAACAACTCCAAGGAGA--------CTTCAATTAG-------------AGATCACACAGCACTTTG----AGTTGT---TCT s rn2.chr2 189960516 224 + 246339213 GAGGATATTCATAAATGACC------------cctaagagcagg------------acattgtccta-----cccaaccacaaca--------ccattgtca----------cactcaagagc------tcagtattggtat--ggtctcattaccc--------------aCAATTCCCCA---TTTGTCCCAGCA-------------------GTGTTTGTTCTCCAGCGTGCCACTCCCCCTCCCCCACTCATG-----CA----CTAACAGCTCCAAGGAGA--------CTTCACTTAG-------------AGATCACCCAGCACTttg----agttgt---gcc a score=27345.000000 s hg15.chr13_random 68450 358 + 414659 gtctcctgttcatagacaaggaaattgtgagtaaaaagggagggtaaTAGGCACCTATTGAGCATCTTCTTTG-----CATGAGGTGCTGAAGGTCAGTTATTCTATTAGAATTGCACAACAACcccaggaaagatttaagtgactagcttaaggtcatgtacctagtgaatggtggagccaggatttgaaccccggttgtctcccaCAATGTTGCCTGCACCCAGGCCCTGTCCAGTTGTATGGGCCCTGAATTTGAGCTCCTTTCTC-TATGGAGGCTGAGTCTGTCTCAAAGCGGATCATCAGGATGCATTAATTTGGGGAGCATTAGTCAGTGGGGCTTTCTGCAAACACTCTCGCCTTC s mm3.chr3 101733033 298 + 160674399 GTCTCTTGTT--TAGATAAAGGAACTCAGAGGAGAAAGGACAAACAGT-TGCATTTGTTGTG-----TCTTTGGCCTCCATGGG-----CAAGATCAGCTATTTGATTAGAATT----CACATTCCCTGGAAGAATTAAAGGG--TAGCCTTAGGTCACGAGGCTGGTCTTTGGAGGATACATGGGGCCAGTCT------------------TTGCCTGC-CTCAGATCCTATC-----ATGTGGGC--TGAGTTTGAATCTCTATTTCTTGTGGAAGCTGAGT-------------GGCC--CAGAAGGTGCTGATTTGGGGACCAGTCTGCAGTGGAGGTTCCTTCAGACA------CCTTC s rn2.chr2 189960881 293 + 246339213 GTTCCTTGTT--TAGATAAAGGAACTCATCAGAGAAAGGACAAACAGT-GGCATTTGCTGAG---CTTCTTTGGGCCCCATAGG-----CAAGATCCGCCATTTGATTAGAATT---TCACATTCCCTGGGAGAATTAAAGGA--TAGCCTTAGGTCATGAGGCTGGTCTTTGGAGGAAGCATGGGGTCAGTCT------------------TTTCTTGC-CTCGGATCCTATC-----ATATGGGC--------TGAATTCCTTTCTCTTGTATAAGCTGAGT-------------GGTC--CAGAAGGTGCTAATTTGAGGATCTGGCTGCA--GGGACTTCCTTCAGACA------GCTCC a score=156.000000 s hg15.chr13_random 68808 76 + 414659 ATCAGGCTCTTCCGCTGACATGCGGGAGGAGTTAAG---TACATGCAGCTCTTATGGTTTTCCTCCA-TCTGTCCTTGTC s mm3.chr3 101733331 63 + 160674399 ATCA---------GCCAGCGTGTTG-----ATTAAGCCTTACAGAGAGTtttt---gttttcttttgttttgttttTGTT a score=77881.000000 s hg15.chr13_random 68884 794 + 414659 TCCTGCCAGGTTAGAAGCTGGTGGAGGGTGGAGCCCAGGCGGTAGGCTCCTGTGTTCCTTCCCTCACCCAGCCCGTGCCTCGGCTGGAACAGACACCTGTGCAGGCAAAGGCAAGGGTTTGACTTTGCAAAGATGGCTGGAACGCCTTGCCAAAGGGATTTTTCTGCCCACTAACAGCCATGGTTAGGGCCTGACCTGGTCTGCCCGACTACTTTAGGTGGCC----ACAGTGTTGTTTTCAGCAACGTGAGGTTAAATAACGGTAACCTTTGGGTTTCTCCTTCACCTCTTCCAACCCCATAGCAGAGTTCTGTTCTGTACCAGATTTGGAACAAGTGAGTTGTATAAATGATGAGACTGTTCCCTTGGCCAACGAGAGCCTAAACTTTGACTGACAAGAGGCTCAGGGAAGAGGCTGTTTTACTTAAGTGGATTTTCAGGTTAGTGGAAGGTTAAGCAGAGACCCCATTTTATGTGAACCCTTGTTGTGGAAAATGTCGAGGTACCCACTTGCCTGCGTTATTGAGTGGGACATTAGGATTGTAATTG--CACCTTTTTTGGTCCCCTCTGGCTCTCAAAGTCAGTTTTCTGAGCAGCATTGCCCATCACATGGTTCTGCAGCTGTAGAAGGTAGAGGAGATGCTG----ACCTCAAGACCTTGTCTGACATTGCCTTTTTGAATCCATCCCTAGTATTTGCCTATTTCTGGTATTACTTGGAATCTAAGACTGGAGTGCCTAAGGGAAGAATACAGAATTAGTTCATTGAAGGTTCTAATTATTTGGATT--------AATTTATGGTG s mm3.chr3 101733394 651 + 160674399 ---------------------------------------------TCTCCTGTCTTTCTGACC-CACCCA--CTTTGCATTG-----------------------------------------------CAGACACTTTGAGCACCCGTCC----------TCCTATC--CTAGCAGCAGTGATTAGTGCCCAGCCTGGTT---------GCTTCCGAGGGCCCCTGACAGGGAAGTTCTCACCAGTG---------------------TCTGAGGTCATCCTTCCCCTCGCCTGACCCTGTCACAGAAGCCTTTTCTGTACCCCATTGGGAACAAATGGGATTTAGAAATGTTGAGACTCTT-ATCTGGCCAATTAGAGCGGAA--TTGGGCCAACAGGATGC-TAGAGAAGAGGCCGTT---CTTAAGTGGGTGTTCAGGTTAATGGGGGGTTAAGCGGAGACCCCATTTTATGTCAGCAC---TTGGGGAAGATGC---AGCTCCCCGCCGGCTGCCTTATGGAGTCGATCCTTGGGATGGTAGCTG--CATTTCTGTT-GTCT-----GTCACTCAAGGTCAGGGTTCTG-GCAGAAGTACCTGTCACATGGCTTTACAGCTTGGGAAGGTAGCAGAGACCATGCATGACCCCTAGACCTTGCTTGTCATTGCCCTGCTGAATAAGTTCCTACTGTTTGCTTGTTTCTGTTACCACTCCGAATCGAAGGCTGGAGC-CCTGAAGCACACGTGCACAGCTAGTTCATT-AAGGTGCTCCTTGTTTGGATCCTGACTCAAATTCATGATG s rn2.chr2 189961596 650 + 246339213 ---------------------------------------------tttcctgtctttctGATG-TACCCA--CTTTGCA--------------------------------------------------AAGATGCTTTGAGCACCCTCCC----------TCCCGCA--CTAACTGCTATGATTGGTGTCCAGCCTGGTC---------ACTTCCGAGGGCCACAGACAGGGAAGTTCTCAGCAGTG---------------------TCCAAGTTCATCCTTCCCCTTGCCTGACCCTGTCACAGAAGCCTCTTCTGTACCACATTTGGAACAAATGGGATTTTGAAATGTTGACACTCT--ATCTGGTCAATTAGAGCTGAA--TTGGGCCAACAGGATGC-CGGAGAAGAGGCTGTT---CTTAAGAGGCTGTTCGGGTTAATGGGAGGTTAAGCGGAGACCCCATTTGATGTCAGCAC---TTGGGGAAGATGT---GGCTTCTTCCCG-CTGCCTTCTGGAGTAGATTCTCGGGATGGTAACTGTGCATCTCTCTT-GTCTTGTCTGTCACTCAAGGTCAGTGTTCTGAGCAGCAGTACCTGTCACATGGTTTTACGGCTTGGGAAGGTGGCAGAGACAGTG----ACCCCCAGACCTTGCTTGTCATTGCCCTGCTGAATAAGCTCCTACTGTTGGCTTGTTTCTCTTACTGCTCAGAATCTAAGATTGGAGC-CCTGAAGCACAGGTGCACAGCTAGTTCATT-AAGGTGCTCATTGTTGGGATTCTGATTTAAATTTCCGATG a score=268889.000000 s hg15.chr13_random 70123 3165 + 414659 GCTGTTATGAGACCGCTACTTAAAGGTGCACAGTAATATACTTTTATGACCCTTTGGAGGCTAGGAAGGGCAAAGGTGGGTGCTTGAGGCCGTGCAGGACTCCCAGAGGGCAGTTGAGGCAC-CAGGAGAGTGCATCCCCTTAAGTGTTACTGTCTCTCCTCTATTAAATATTTATGCATTTAGCACTTAATATTTTCCAGAGAGCTTCATAAGAGTTTTTACTCTTTCTTATTTACT--TTGGTGCTGGTGCATTCATTTTGGGGAAATAGAAGTGGAAAAATACAtgagagctgactgtgcgctggagac--tgttggacacttggtgtatattatctcacttaatcttcactgcaac--cctgggaggaa-----catattgctttcccatttta--taaatgaagtaacagaggctctgagaggttctcagttcctcaaattaaacacc-----tagtgagtgggggaagttgggatttgaatccaggtgtgcctCGTTAAAAAGTAATTGCGGTAGGGAGACTTTGACCT--TTTTAAAGGCTATGTAATCAGAGATTCTTCTTTCTGCATTCAGTTAATGCTGTCCTTTACAGAAGAATTTTCTCCTTGTAGATTGATGATGTGGAGGAGTTATGGCACTAGTGTTACTGGTAGTAACAACagtagcagctaatattcactgagcatttcttgtaaaccactgggaatgctttacacataataacttag-ttccttgtttcttaatccatgcagtgc-------tgtgagggggaccattttacccaacttcacagatgaggacactgacacagaagttacataaattgcccagtgtgccatagtaagtggcagagccaggattcaagtccagacaggcagtttggctccagagtccaagttcctaattttattattatatgttCTAGACAAG-------------------------TGTTTTTCTTCTCAGGAATCCTCTTTGGTAACGTATGCTTGTATT----------------------------------TA------------------------------------------------G-----------TGTTTCC-----TCTCTCTGGTTAACCA-----CTCCTGATTTCCTAA-----------TCCCCTTTAGCAAATCCTTAAATTTGTTTTTTGGA-----------------------AGTTGGGGTCATAAGACACTGGTAGAGGTTCCTCAAGACACAGTTTGCTGATGGTGTAGAAGTTTTATCTTGTGCCTCTTTTAA---CTCCTGATTCTTCCAGCTTCTGCCACAAGGTGGCTCTAAGACCTGGGGATACCAGAGCTCAGAACCAGCGCTGTCCTCTCTTC-TTTTGCTCTCCCTGCATACCTTGCCCCTCAAAACATAGATTCTTAGCCCTGCTCTGGTGTCTTCCATAGAAGTGTCCCCTGCTACCCCTGTTTTAAAGAATATTGTGTTAAATATTCGTATTCCATCAGAATCAAATAGGAACCCAGGGACTGTTGGCTCACTCAT---------------------GCTGGTCCATTTACCATCAGCCTTCCACTGCTGT---GATATCATTTATCACAGCAAGCTTC-----TCTGTGGTCTGTGCCCCAGACTCGTCCCTGCTGATCCTGCC-------------------CCCATATCAGTATTCATCAGAATCTCTGGTTGGATGGCACAGTTGACTT--------------------GTGGATCTGTTATTTGACCATGCCCTGTGTGTGCTTCCTGTTGCGTATGCACATCCCCAA---CAGAATCTTCAAGGAATGC--------------CAT---------GACTGTCATGTTGCCATTGATCTAGCTTAGTCTGATCCCCATTGATCACATAGTGTGACCCCTCAAGGGGTGCTTAGGCAAGACTTTCAGCCAGTTC-ACATATTTGATTGTTAGCTCTTAATCAGTTTTCT--CTTTTAATTGTAAAGCATAATTGCCTTGCTTCCTTCTGATTTTCTTTAGCTC--AAAA-CGCCCTCCAATTACACATCCCTAAATACAGAAGCAGTAAGGGAAATGTCAGCACTCATTTTCCAAATGTTTACGACAATATCTTGGTTTGGCT--------------ATTAAAATTGACAAAGCCATAAACAAGCTTCCATGAGGACAGCCTCCAGTGGTGGAAAGCTGACTTGTCAGAGGGTGTATTCTGCTGGGATTTTACTGATGGGCACTCAGGATGAATATTTAATACCCTCTGGATGTTGCCAAATCAGTTTTCTTCTATTTCTTATTGCTGACCTGGCAGATTGGGATAGCAGAGGGCTTTTCTTTGACTTCCATGAGTCCAGAGCATGTGAACACTGGCTATCCTTTCACATTCTGAGGGATGACTGCCCCATCCCTCAGAGGACTGGCCTCTGCCTTCTTTCAGGGGAGTCCGGGTTCTCCTTCTTCCATCCCAGGTGGCTTCTGCCTGT----TGTCTGTGCCAAGATAGAATGGGTGTGAGTGCAAGAGCCCTAAGAGGAGAGCCCAGCCCCTCCCAGATGCCTCAGGCCTGTTGTCATGGTAACACCGG----------GGCACTTGTTATTGGCATCAACGAGCCAGAGTCACTGCCCTGCCTGCAGACAGGTAAGGCAGGGTAGAGCGCATCT-GGGTAACCTTCATTAGCTATTTCCACCTGCAGACTCTTGCTGCTTTCCCCTTGCC-----------CCTCCCTCC-CTGTCTCTCT--GCATGCATTGAGCACCTACTAAGTGCCAGGTTGCCATGCTGGTGAGGCTGCTGAGATGGGTGTGTCACGTTCCTGCCTTGCGGGCTCTGTGGGAGGCAGCAGGCCTAGGGACAGAGGAGAGCAGAAAAGCATTACAGGTGTGGAGGCAGAGCCAGCACAGGGCATGAACACggggcagggggcagggggcgtgaggagggaatggggtaggggtgagggtgggaggttgggaaggaggagtggAGCATTTCAGGCTCAGAGAAGAGTGTGAATAAAGATAGTCATGGAGGGTGGGAGCAGCATGCTTATCTTGAGATGACTAAAGCATGGGGTCTGGGAGGGGTTCACCCCCAGGCAAGCTGGCAGGGATCAAGAAGTCCCTTTTGTACATGGGAGCACGGGGTGAGGGTGGGCATATGtaatagctaaaagcaaggacagaccagacagcctgggtttgaatcccagctctaccactaagccagctgtgtgaccttgggcaagtgtctttataaaattgggaataatatttatttcataggattggtgaggaccaaatagttaatatttataaagtgcttagaatagtgctgagcacatagGACCAGACGAAAGTTTGCTAAATAAATAAGAATATCCTAAACTCAGAAATTAGGACTTTAGCTCATACCcagatcatatac--------------------tccattt-------------- s mm3.chr3 101734888 2951 + 160674399 GCCATCACGAGGCCTGCTCTTATGGGTGGCCAGTAACACA-TGTCCTGGCCC-TTGGAAAATGGGAAGAGCAAAGG---------AAAGCCGTTT--GACTCCCAGC--ACGGCTGAGGCACAAGGGAGAGTGCG-CTCCCTAAGTGTTAC--TCTGTCTTGTGCTAATTATTTATGCACTCAAAACCGAATATGTTCCAAAGAGCTT---------------TCTCTAAAATGCACGG-CTAGTGCAGGTGCTTTCGTCTGGGGGAAG-------GGA----------------GACTGAGTGCTGGAGACAGTGTTGGGTTCTTGGAGTGTGTTATCTCCCTAACTCTTTGCAGTAACACCCCAAGTAGAAGAAGGAATGTAGCTATCACCTGATA-GTAAACAGTCAAACATCGCCCC---------CCAACTCCACC---------ACCATTAGCGGTGAGTGGGAGA--TTGGAATCCAAACCCAGGCATGCTTTAATGAAAAGTGCTGGTAGTGGGGAGACTTTGCCCTTCTTTTTGAAACCGTGTAATCTCATCTTATTC-TTCTGCATTCGACCCAGGACATCTCTTATGGAACATGTTTTCCCT-----------GGTGTGCCGGAGCCTCAGCTGTGGTAGAATTTAACGTAACAGTAGCAATG------------TGTGGCTGTCTG------CAGTGTAAATGCCTTACTTCTGATAACTTAACTTGATTTTTCCTTAATCCATGCAGGGTCAATGGGTGTGTGG-----TGCCTGACGCAGCtt-acagatggggactctgccacccagggtgaataagttgcccaatgattcatgatgagtggcagagccaggattcaagtccaaacaggcggtctggctccagag-ctaaaattttaattttatta-tatactCTGTAGACAGTGAGCCAAAGTTTTACTGACTTACGCTTTCTTCTCTCCCTAGTAGCCTATGGTACAgtgtgtatatgcatgcgtgttagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagagagggagagggagggagagagagaTGGAATGAAGGGCTTGG-----TGTATGCAAGCAAGCATTCTCCTCCTGGGGTGCCAGGCACCAGGCATTTTCCTTGAGTGGACACTCTGGTTTGTGGTCTGGGTTCCCTGAGTCTTGGTTTTGTAGCATTAAGGCCACAAAGCATT--TGGAGCTTCGTTGAGGCATAAGTTGTTAAAGATG----AAACCAAATATCTACCTCTTTTGGGTTCCTTTATTTCTTCTAACTTCTGCCACAAGGTGGCTCTAGGACCAGGGAA-------------AAGCAGGGCAAGCCTCCTCAG-TCCCACCCTCCCTGTGGAGCCTGCCTCTCCAAG--------------CCTGGTTTAGCATCTTC---------------------CCC-----TAATGAATATCTTAGTGAATGTTCTTATCTGAGGAGAATCACCAGGGAGCCCAGGCTCCGGTGACTAGCTCAGAGCCCAGGCACCAGTGACTAGCTCAGACCATTTACCATCGG-CTTCCACTGCTGCAAAGAAGGCCTTTGTCCCTGTTCCATTCCATTCTGTGCGGCCTGTA-CCCAGACTGCTTTCTGCCAGAGCCACTGGTGGGGACTGCAGCGTGGCTGTTCTCTCCATT----AAGCTCTCTGGTTAGCTGGCGTGGGCGCCTTGCCATCAGAAGTGACTTGCCGCGGATTTATCATTGGC--------------TACTTCCAATC-CATAAGCATGCCATGGATCCTAGGATCCCCAAGGCGATC--------------GATCCATAGTTAGCCTCCCTTTCTTCCCTTGATTTAGTCTGGTCCTACC----------CCATACTATGACCC--CATGGAGCACTGAGGCAAGACTT--GGTCAGTTTGAGGTGTTCCATTCTCGT-------TCAGTTTTTT--CTTTTAGTTGTGAAGCATCAT---CTTGCTTCCTTCTGAGTTTCTTCAGTTCCAAAAAACACCCTCCAATTTCACATGGCTAAATACAGAAGCAGTAAGGGAAATGTCAGCACTCACTTTGCAAATGTTTACGACTATCCCTCGGTCTAGCTATTAAATATTGTGCATTAAAATTGACAAAGCAATAAACAAGCCTCCAGGCAGGCAGCGTCCGGTGGTAGAAGGCTG-CTTGTCAGTGGGTGTATTCTGCTGGGATCAGACTGATGGGCAGTCGGAATGAATATTTAATGCCCTCTGCATGTTGCCAAATCTGTTTGCTTCATGTTCT--CTGCTGACCTGGCAGATTGGGCTAGCCGA---------------------GAGTCTTGGGTATGTGAGCATGGGCTGTCCTGAC-----------------------------CAGAGAAGTGGCC-CTGCATTCTCCCTGGGCAGCCTGGGTT---CTCCTTCCAACCCACGCAACTTCTGCCTGCCTGGTGTCTATG-CAGGGCTGGGCAAGCCTGAGTGAACAAGCCCTTAGAGAAGGTCTCAGCCCTCCATTCGTGCTTCAGCCTTGTTGCCATGGTGGCAGCAGGTGTCTGCCCGATGTCAGTTACTGGCGGCAGTCAGTCAGGGTCACTGCTCTGTCAGCATAAAGGTTGGGCAGGGTAGGGTGTGCCTGGGCTTCTCTCAGTTTGCT-CTTTTACTTCCCAACCCTTGCCGATTTCCCTctgccacctgcccctgcccctgccacctgcccctgcGGGCATGT-TTAAGCACCTGCTGG------------CATG-----------GTAGGTGTGGGTGTGT----------------------------------------------------------------CACTGCAGGCGTGGGTGTGG----CACACAGGACTTCACCGT---------------------------GGACTGTGGATGGGAAAAGGGTTAGACCTT---------------------------CCAGAATGGAGGTTGAACCAA------CACCGGGAATGG----------------------------ATGTGTGTGAGCCAGGAGGG------CCCCGG----------------------TTCATTTTTGT---------------------------------------TAAAGGTGAGGGTGAGCCACATGGCCTGG--TGGGAGTCCAAGTCTACCAGATCACTGGCTCTGTGAC--TGAGAAAGAAtcattctgaaattgggagtaatatttacttgataggagtagtgaggagcatatagttaatatgtgtgaagcgcttaTGGTAGAAGA--------------------------------TAAGACAGAGCACCCTAACCTGGGGAATT-GGGCTTTGGT-CATGTGAGGCTAATATACCTTTTTAAAAAGTATTTCTTTCTATTTTTAGCTATGCATGt s rn2.chr2 189963052 2832 + 246339213 GCCAGCAGGAGATCTG---------------------ACA-TGTCCTGGCCCCTTGGAGACTAGGAAGAGC-------------------------------CCAGC--GTGGCCGAGGCATGCAGGAGAGTGCA-CTCCCTCAGTGTTACCGTCTGTCTTGTGCTAATTATTTATGTACTCCTAACCGAATACTTTTCAAAGAGCTT---------------TCTCTAAAATGCACGGGCTAGCACAGGTGCTTTCGTCTGGGGGAAA-------GGA----------------GACCGAGTGCTGGAGACAGTACTGGGTACTTGGCGTGTGTTCTCTCCCTGAGTCTTTGAAGGAAC--CCCAGGTAGAAGAAGGAATGCGGCTTCCATTTGTTAAGTGAACAGTCAAACAGTGCCCT---------CTCAGTCCAAC---TGAGACACCCTCAGCAGTGAGTGGGAGA--CTGGAATTGGAACCCAGGCATGCCTTAATGAAGAGTACTGCTAGCGGAAAGTCTTCGCCCTTTTTTTTTAAACCATGTAATCTCAGCTACTTCCTTCCAAAGCCGACCCATGACATCCTTTATGAAACATATTTTTCCTTGCATGTTCCTGGTATGCCGGAGCCTCAGCTGTGGTAGGATTTAAAACAACAGTAGCAATG------------TGTGGCTGTCTG------CATTGTGAATGCCTTACGTCTGATAACCTAACTTGAGTCTTCCTTAATCCACGAAAGGTCAATGGGTATGTGGG----TGCCTGGCGCAGCtt-acagatgaggactctgccacccagggtgaatgagttgcctggtgattcatgatgagtggcagagccaggattcaagtctaaacaggcagtctgggcccagag-ctaaatttttaattttatta-tatactTTATAGACAATGAGTCAAATTTTTACTGACTCATGCTTTCTTTTCCCCCTGGCAGCCTATGGCACAGTGTGTGCATGCATT----------------------------------TGTGCATACGTACGTGTGTGTCAGGGGTGGGGG-----------------GATGCA------GGTTTGGATTTTTGTGTGCAAACAAGCATTCTACTCCCAGGATGCCAAG-ACCAGGTATTTTCCCTGAGTGTCCACTCTGGTTTGTCGTCTGAATTCCCTCGGTATTTGATTTGTAGCATTAAGGCCACAAAACCTT--TGGAGCTTCATTGAGACATAAGTCGTTAATGACA----AACCCAAATATCCATCTCTTTCAGATTCCCTTATTTCTTCTAAATTCTGCCACAAGGTGGCTCTAGGACCAGGGAA-------------AC-CAGGGCTGGCCTGCTTGGGTTCCACCCTCCCTGGGGAGCCTGACTCTCCAAG--------------CCTGGTTTAGCGTCTTC------------------TGCCCC-----TAAGGAGTATCTTAGTGAATGTTCTCATCTGAGGAGAATTAACAAGGAACTCGGGCCCTGGTGACTAGTTCAG--------------------------------------------TCCACTGCTGT---GAAGGCCTTTGTCCCTGACACATTC-----TGTGTAGTCCGTA-CCCTGACTACTTCCTGCCAGAGCTGCTGACAGGGACTGCAGAACTGCCGTTCACTTCCTTCCTCAGGCTCT------GGCTGGCATGGACGCCTTGCTGTCAGAGGTG-CTTGCTGCAGATTTATCATTGGC--------------TACTTCCAATC-CATAGGCATGCTACAGAACCTGTGATCCCCAAGGCGATCATCGATCGATCGATGATCGATAGTTAGCCTCCCTTTCTGTCCTTGATT-AGTCTAGTGTTATCTGT-TTGATCCCATACTGTGACCC--CGTGGGACACTGAGGCAAGACTT--GGCCAGTCCAGTGTGCTCCATTCTCTTCTCCT--TCAGTTTTTTTTCTTTTAGTTGTGAAGCATCAT---CTTGCTTTCTTCTGATTTTCTCCAGCTCCAAAAA-CACCCTCCGATTTCACGTGGCTAAATACAGAAGCAGTAAGGGAAATGTCAGCACTCACTTTGCAAATGTTTATGGCTATCCCTCGGTCTAGCTATTAAATATTGTGCATTAAAATTGACAAAGCAATAAACAAGCCTCCAGGCGGACAGCGTCCGGTGGTAGAAGACTG-CCTGTCAGTGGGTATATTCTGCTGGGATCGGACTGATGGGCAGTC-GCATGAATATTTAATGCCTTCTGCATGTTGCCGAATCTGTTTTCTTCATGTTCT--CTGCTGACCTGGCAGATTGGGCTAGCTGA---------------------GAGTCCGGGGTATGTGAGCATGGGCTGTCCTTAC-----------------------------CAGAGAAGTGCCC-TGGCATTCTCCCTGGACAGCCTGTGTTCTCCTCCTTCCAACCCCTGCAGCTTCTGCCTGCCTGGTGTCTATG-CAGGACAGAGCAAGCCTGAGTGTAAGAGCCCTAAGAGAAGG---------TCCATTCATGCTTCAACTTTGTTGCCATGGTGGCAGCAGGTATCTGCCTGATGTCAGTTACTGGCAGCAGTCAGTTAAGGTCAATGCTCTGTCTGTAGACAGTTTGAGCAGGGTAGGGTGTGCCT-GGCTTCTCCCAATTTAAT--GTTTACCTCCCAACCCTTGCTGCTTTCCCTTTGCC-----------CACCTGCTG-GTGCCCTTCTGGGCACGT-TTGAGCACCTACTGG-----------------------------------------------------------------------------------------------------------CACTACAGCTGTGGGTGTGT----CACATGGGACTTCAGTGT---------------------------GGACTGTGGATGGGAATAGGGTTAGACCTT---------------------------CCAGAATGGAGGTTGCACCAG------CACCAGGAATGG----------------------------ATGTGTGGGAGCTGGGAGGG------CCCCAG----------------------TTCATTCTTGT---------------------------------------TAAAGATGAGGGTGAGCCACATGGCCTGG--TGGGAGTCCAAGCCTACCAGATCACTGGCTCTGTGAC--TGAGAAAGAATCTTGGTAAAATT-GGAGTAATATTCACTTGATTGGACCAGTGAGGAGTGCATAGTTAACATTCGTAAAGAGCTTATGGTAGAAGAGAGCCTG-------GGACAAAAGTTT----ATTAAGTCAGAGCGCCCTAACCTGGGGAATTGGGGCTTTGGC-CATGTATAGCTGATATACCTCTTTCAAAAG----ATTTtctatttttaaccacgtgtgt a score=62978.000000 s hg15.chr13_random 73428 925 + 414659 taa--------------aataacgtgtttcaatgt------------------------------gtaaatgctcagg---acagctatgcta----ggaggcacagtCACAGTCAACGCTGTCCCTAAATGCACACTGACAGTCACCGTATCAGACTTGGCaccatgagcaggactgccatcctgacagggtttctgaagtcctgagtaactcttgctacaattctgaacaaaacaaaggaaaatcctctcttgactgacctggcatgtattaaaaccatgc------------------aaaataaaagtattgtgattatagtaaaatgaaagtaggttctaggctcagaggcataatttttgcccatatgaatgtcattcgaaagtc-------acacaggacacgaggcagagttttgttgcatggagttgtcccagatacgattttacatctttaatggctttattccattgaatatatacccctccccaaatcaatatggcaacc-agagaCC---TGCTTGCA----------------------------------------------------ATTAGCTGCCTTAT----TGAGAACTGCTGTCACGGGCTGTGGGGTGGGCAGCCGTGGGCAGTAGC--ATGCCCCATTTGCCATTTAGGGAAATCCCCTGGCTGTGGCT-AGGCCGAGAGGGAGGGAGTGTCATATGCAGGCCAATTATAAGAGGCTGAGAAAGAGATCATTGAGGGCC---CAAATAGGGAATGGT----CATGTGGAGAGA-GCAGGGAGCCAAGGGGTGTTAAGGACAGAGGGAC-TCAGGGGTAGTAACAGTTTGAGTGGCAGGCGC-CTGTGCCACTGGCTTCCCA-----------------------------TGCAGCTC--------------------ACCCTGCATTCTTTCCTTGTCTCTCATCTGACTTGCTTCTCTCCACTTGAAACATCTCTCCTGCCGCAGCCACTGGCCACCTCTATCTCTAGCATTACTGTCTGTTGTCTTTAATAAAGAGCAGTGTCTTCCTCCCTCAGTGCCCATCTCTTTGCACCTGCCACTCTGGCTGCTGCTCACAC s mm3.chr3 101738240 870 + 160674399 TAG--------------------------------------------------------------GATAGTGACAAGGGACTCAGTCATGGCCGGCTGGAAGGGCTGTGAC------TGCTGCCCTCAACTGCAGAGTGACAGCCATTCCG-AA---------------------------------------------------GAGTGG--------------CTGAAGAAGATAAAGACAAGGTCTCTAATGGTTGGCCC--TATATATTAAAAACA------GGAAGAAGAAGAAAAGAAAAATGGGTGCTGTGTTTACTAGAAAAGCGAAGTAGACTCCAGGCTCAAAGGCACAATTCT------CATGAAGGTTATTTGAAAGTC-------ACAGAGGACACAGGACAAAGCTTTATTG---------------GAAAGGATTTGAGA------------------CACTACCTACCTCCTACTCCCTAAACCAATGTAAAAATCAAAAGACCTTGTGCCTCCGGGTTCCTGTGATGATGTAGGATTGTATTTGAGGGGGACAGGGAT--GGGGGCATTGTCTGCCCTGTGGAGGGAGAACAGATGTCCCAGG--GACAGGCTCTCAGC--TTGGAAGTGACCACCCTCTTGCTTGCCCTTTAGAAAGATCTCCT-----TGGCT-AGAC--AGAGGCTGGAAGACTTGTCTTCAGGCTGC-------GGTCTGGGGAAGAGCTTATTAGGGACTGGGTAGGTAGGTCCTGGC----CATGTAGAGGGA-GAAGAA-------------CAGGAACATGGGCACTTCAAGTGCAGTGACTTCATGAGTGATGGGTACATTTTTCTGCTTGCTTCCCAGAGTGTACATGCATGTAT------ATGTGTGCATTTTGAGTGAGGGGTGTCCCCAGAGCTCCCCATTGTCCCCTAATCTTCTGGTTGACCTGATTCCTTGAACTTGAAAGATCTTATCTGCCCCAGCCACTGGCTTCCTCCATCCCTGACATT----CCCGTTAGATGTTTGAAAAAG-A--GTCTCCCTTCCTTC-TCTTCATTCTTT------------CCTGATCTCTCCTTGACT s rn2.chr2 189966261 939 + 246339213 TAGGAGGAATGAATATATATAAAGTTTTTTAGCGAAATACATCCTCTCATATATAATTACTTGAAGACAGTAACAAGGGACACAGTCATGGCC----AGAGGGGCTGTGAC------TGCTGCCCCTAGCAGCAGCATGACAGCCATCACATTA---------------------------------------------------GAGTGA--------------CTGAAGAAGATAAAGAAAAGGTCTCTCCTGGTCGGCCC--TATACATTAAAAACATgaaggagaaggagaagaagaagaaaaaaaaTGCTGTGTTTACTAGAAAAGGAAAGTAGGCTCCAGGCTCAAAGGCAGAATTCT------CATGAGTGTCATTTGAAAATCACACAGGACATAGGACACAGGACAGAGCTCTATTG---------------GAGAGAATTTGAGA------------------CATTAAATATTTTCCACTCCTTAAACCAATGTAAGAATC--AAGACCGTCTGCCTCCAGACTCCTGTGGTGGTGTGGGATTGTCTGT---GGTGATCGAGGTCCAGGGGCATTGTCTGCCCTGT----GGAGAACTGATGTCCCAGG--TTCAGGCCGTCAGC--TTGGAAGTGACCACTGTCTTACTTGCCCTTTAGAAA--------------GGCTGAGAC--AGAGGCTGGGAGTCTTGTCTTCAGACTGA-------GGTCTGAGGAAGAGCTTATTAGGGACTAGGTAGGTAGGTCATGGCCGGGCATGTCAAGGCATGACAGG-------------GAGGGACATGGACACTTCAAGTGCAGTAACTTCATGAGTGGCAGGTGC-CTTTTCCACTTGCTTCCCAGAGTGtgcatgcatgcatgcatgcatgtgtgcatTTTGAGGGAGGGGTATCCCCAGAGCTCCCCATTCTCCCCTAGTCTCCTGGTTGACCTGATTCCTTGCACTTGAAGGATCTTTTCCACCCCAGCCACTGGCTTCCTCTGTCCCCGCTACT----CCTGTCATGTTTTAGAAAGAGCA--GTCTCCCTTCCTTTAACTTCATTCTTT------------CCTGATCTCTCCTCAGCT a score=6764.000000 s hg15.chr13_random 74353 525 + 414659 CACTGCACAGAAACCGCTTTCTCCAGACTTACCGGCAACCACCTCAGCAGCACAGCTGTtgcttctcaaacttgaatgtgcatcagaatcaattggagggctcatgagcctgcaggttgctgag-------ccttactcacagtttttctgacttagcaggggctggcaaattcccaggtgatactgatctgcagatccatggcatgcaccctgagggccacAGGTGGTCAGGATCAAGTACAAGCTGCAGGCCCCTTGCAGTGTGGCCGAAGCTTACCTTTCTAACCTCATCCACTACACCTGAGCACTTGCTCCTCCTTGAATAGAGTGCACAGGGTAGTTGTTATCTTTCTTCACTTGTCCCCTCTCTCTGGCATGCCCTTTCACTCTCCTTCTCTGCTTGTTTCTCAGGGCCTAGCTCAGAGGCCACATACCTTTTGAAATGTTCTCTTT--TCTATCAAAATCAGAATTG----CCCCTCCTTTTAAAAAGTAACCACATTT---ATTCAACCATTCATTGATTAGT----TTAACAATG s mm3.chr3 101739110 458 + 160674399 CTCTTC--------TGCTCTTCCCTTGCTCTCTTGCATTGAATCCACCA-----------------CACACAAGAGCCTGCA----------------GGCTCTCAAACCCACAGGTCACTGGGAGTCATCTCTTACCCCCA---TTTCTCACCCAGTATAA--TTCTAACTTGCCAGGTAGCTGTGCC------ATCCACCAAATATTCCCTAAGAGCCACAG-TGGGCAGAGTCAAGAACTGGTCCC--GCCCC---CAGTCTTGGCCA--CTTCCCTTTCTGACATCATCCACCACACCTGAGAATCTGGCCTT------GTTGCCTGCTCTGGGTGATC----TCTTCCTT---TTGTTCTTCATCTGTTGGACCCCAGCTCATTC-------------ATTTTTCAGAGCCCAGCTCAGGGATCACA-GCTTTTTGCAAGGTTCTCTCTCTTTTATCACAGTCGGAATTAATGACCCCTCTTTTAAAAGATTAATTGGGTTTTTAATTCAATCACCTATTAGTTAATGTGATTAGCAATG a score=54859.000000 s hg15.chr13_random 74878 717 + 414659 ATTGGGTCAGAGTCCCTGCCCTGCATATGCTTAGAATTTTGTAAGAAAGAGAAGAC--TTTAAAAATTACCTTCGTTGTAAGGCAGCAGTAACAGCTATAGTGGAGCATAAGG-GAATCCTTTATTGAAGAAATAAATGAGTTTTGAGTGAGAAGAGCACGCACAGAGTGGAATCTGAAGGGAGGGTAGGCTGGCTGAGAAAGCTGCTGCTGGTCTCCGCTGTGGAGTTCTTCCCTCTTCCTGATGTCTCACCTTGAAACCACCCTATCCTGGCTTGTAACAAATGCAACAGCCTCTCCTACCATACAAAAC--ACAGATCTTCCAAGTTTTAATCACAAGCCTGGGAAGGAAACTCTC----CAGCTGCAGAAAGAAAGGGCCACTCCCTCAAAGCAGGGCCTGGTCCCTGGGGGCTGCTGTGAAGGCAGCTGCTGGCGTGAGCTGGAGCAGCTCTCGGACCCTC-TTCCTGTCT--CTTGCTGGATTCTTTCTTCCTCCTGC----CAATTCA------------CTGTTGGGGGTTAACCAAGCCTCACTCT------------TTTCTTTCACGTCTGCATTTATGGCCTCTCA-AAGCCCGTTCACTCACACGGCCAAGTCCGGGgtttctcaggcttgaagctacttgtgaatcacctggggatcttgttaaagtgcagattctgacttactgggtctggggtggggcctgagagtctgcatttctaacaagct--cccagtg---------ctgctggtcca s mm3.chr3 101739568 682 + 160674399 ATTGGTTCATAGTT---------CTTTTGCCCAGGCATTTGCAAA-ACGAGGAGTCCTTTTAAAAGTGGCCTTTGATGTAAGG---------CAGTTATGGCTGAGTTTAAGGAGATTCATTTACTGAAAGAGTAAGTGCCTTCTGCATGAGCAGTGCACACATGAA--CCCATCCAGAGGGTGGGTAGGTGGGCTAGGGAAGCAGCTGCTGCTCTCTGCCGCTGAGCCC----CTCATTCCACTGTCTTTCCTCCATGTAGCCCACTTCTGCCTCATAGCAG----AGCAGCCTTTACC--------AGACTGACTGACTGTCTTAGCTTTGATCCAAAGCCTGGGCAGAGAACTAACTGTCCAGCTGCAGCAAGAAAGGG-CATCCCCTCAAATGA------------TGGGAGCTTCTGAGAAGGCAGATGCTGCAGTGT-CCAT-GGACTGTACGGGCCAGCATTGCCGTCTAGCCTGCCTGG-----CCCTCCTCCTGCCTCCTGCTGTA-----------CGAGGGAGGGATTCACCAAGCCTACCTTTGTGTATCTTTGCTTACTTTCTCCTCTGCATTCATTGACTCTCC-AAGTTTGTGTGCTGA-GCAGCCACACCCAGGGCTTCCCTGGC-GGAAGGCAAGTCTGGATCTCC-ATTGACCTTGTTCTATTga-gattgtgatgcagtaggt------------ctgagagtctg--tctctaagaaattcacccagtgggtctcatgctgctgatccA s rn2.chr2 189967216 629 + 246339213 ATTGGGTCATAG-----------CTGTTGCCCAGGCATTTGCACG-AAGAGGAGTCCTTTTAAAAATGGCCTTTGATGTAAGG---------CAGTTATGGTTGAGTTTAAGGAGAATCATTTACT-AAGGAGTAAGTGCCTTCCGCATGAGCAGTGCACACATAAAA-CTCATCCAAAGTTCGGGCAGGTTGGCTAGGGAAGCAACTGCCGCTCTCTGCTGCTGAGTCC-----TCATTTCACTCTCCGTCCTCCCTGTAGCCTTCCTCTGCCTCCCAGCAA----AGCAGCCTTCAA---------GGACTGACAGATTCCCTTAGCCTTGATC---GTCCTGGGAAGAAAGCTGCC---------------------------------------------------------------------CAGACGCTGCAGTGTACTGT-GTACTGCTTGGGCCAGCATTGCCATCCAGCCTGCCTGG-----CCCTCCTGCTGC----TGCTGCATTCTCTCCTCTCCTGGAGGGGACCGACCAAGCCTACCTTTGCATGTCTTTACTTACTTTTACCTCTGCATTCATTGGCTCTCCCAAGTTCACGTGCTGA-GCAGCCACACTCTGGGTTTCCCAGGC-TGAAGGCACGTCTGGATCTCC-ATGAACCTTGTTCTCGTGAAGATCGTGATGCAGTAGGT------------CTGAGAGTCTG--TTTCTGAGAAATCCACCCAAAGGATCTCACACTGCTGATCCA a score=344915.000000 s hg15.chr13_random 75608 3418 + 414659 gagcagGAAGA-------TTGCCACTTATGCTTGACAACTCCTAATCTAAGTGTTGAACTTTGAACTTGGGACAAGGCACAGAAACCAAAAAGGAATGAGAATagctaaaattcactgggtgtttgttatatcccaggttctgtgctaaactctttttatagacaattgcttttagtctgcacaaaactcctaatgg---agatagagacatt----gttcttattttgcagatgaaaacacCTTTGGTCTCTAAGTGGG-CAGGGCTCTCCTAGCTCTG-----TGGAGGAAGGTG-----GTGCACGCAAGCTGTACACCGCCCAGGGCAGGGCTCTGGCAGGACATGGGAGGGCTCCCTAATTATATGTGGAGATTCCAGTCTCCCCTGTGCCTCAGGAAAGGTCCTACC--------------TGCCCTGGAGATGTGGGAGGAAATCCAGAGCATAGAATAGGAGCTGACCCCTTGCCCACCTGTCAGACATGCACCAAATTTAAAAAATGTCTCTCTTTCAAGCTTCTC-AACACTTCACAATATTTTGACATGGGAAGG-----------------------------------------------------------------AAAAAAAATGGAAATGCTTTGGAACATTTCTCTTCCTTGAATTCTTGTTCTCAGACCACGTGACTGAATAGAATTTTAGTCACAGGATTCCAGTTTAACATATGCAGTTACTATAGCAATTGAGGTTTCCTTAGTAACAGTTGCAAAAA-TAATCCAGCCCCAATTAATAATACATTTTAAAGCTCTTTCTACTCCATGCTGAACAACCCAGTTTTTTTGGCCAAGAACCAGATAATTCAGGTGGTGTCATTTGCACTGATATAGATATCATTTGCATGCGGTGAATTGGGTTGGAAAGGAATGAAAAGGGAGCCGGTTGTTTCAAGTATTATAGGAATCCAATCTGAAAAGTCGACTGGCAAGCGAATGCAAATCTAGCTTCCAGAGCTTGGGAGCTTAATGGTAAACCCTGTCCTGGATTCCTAGTGTGCCCTAGAGGACTTTCTGCATTTGAAGAAGGGAGAAGGCAGAAGATTGGACTTGCTAACAA-AAAAGATGAACCCGGGAGGGTGGGGCCGTGGCACACAGGATTTCTCTCTAAGTGGTGCCTGGTGTGTTCTTGATGGCGTGAGAAGGTCT-GTGGGTTTGTGAATTCAACAAGTCTTCCTGGAGAGAATGTCTGATTCACCGCCGGGAGAT-GCTCCGCAGTGTTGCT----CAGTCACGGCATTGGGAATTGGACTTTGCCACACCTTGGCTTACTAAATCCTTCCATCCATTCAGAACATTTGTCTGTGTGTTACAGGG-AGACCAAGTGGCAGTCTGTGGCTTTCACAAGTTTTGGTTCTGTGATGCATGGGACTCAATCAACCCTTGATGCTGCCAAACCAAGCTTAAGCCAGCTGGCAGGCCAG-------GGTCATGACCAGTGGGCTGGGTCCTGGGTCTGGA-------TGCAGTTCCTGGGGTTGAGCT-------GGACTAAAGAGACAAGAGTCTGACCAGCAGAGTGCTGGAGCCTGGCCAGGCACCCCTGCCCTGCCCCTGCCCCTGCCCTCCACACAAGATCGGTTGGAGGAGGCCTAGGTTGCTGTCCCTGGGTGGAATCTGCACCTTGCCCCTGCTTTCTTTCTCAGCTGGGAAGTGGTTTGGTCCCTGTGGCGGAAAAACTAAGTGTGAAGAGAGTGGTGGAGG-TGGAACAATGCTTGTGCTATTAGTTCCCTAAGAGGAACTTAGAATTGTTTTTTTTTTTTTTTTCATTTTTAGTAGCAGGAGAGGCGTGGGTGGGGGAATGCAGAGCCAAGGTTAATGATGATGGGGTGGGTGAGATCTCAAATCACC----------TTC-CTAACATGGATTTCATTAGACCTTGGCTTCTTGCCACTGGCAAGGTGAACATCATCATTAATTAGCTGCTGGGGAGG------------C-GCTCCAC-------------AGGCTGCCCTCTTGTCTGTTTTTGGAGCGGGACAGTGAGGAGAAGGGAGGATTGCAGTTGGCTTTGCCTTGTCCCGTGGTTTACTGTCTTCTCAGCCTTCTCTCTCACTCCCCTAGAGGAAGCCCCCCCTCCCCACCCCCGCAGCATCCTCTAATTACCTGTTGCCGTGTTTCTCCAACGTGCTCTCATTCGCTCACCCACTCattcacctatttcagcaaacactgatcaaatgctttcctg---------gcccaggtgttgtgctaggctctgggggtgcagcgataaGAATGtccgctaggccgtccgccccatgagggct--gggactctggcttactc---ttcagggcatccccagcacttagcatcctgtgggaaactgagtgggcactccgtaaatactggttgattgagtggaAAGAGCTTGATCCCTGCCCTGGGGGAGCTCACCATCTAGGATATGGGAGAGAGATGTGAAGACACACAGCCCAGAGATATATAGAGGGTGCTGAGGAAGGGTATGGAGCCCAGGGGGATGGGAATGAGGAATAAGTGG-----AGAGAAGGGTGAGGGTGGGAGGTGGCAGAAGGAGAcaggcagagaggacagcaagggcaaaggccagcactcagggaaactgcaccaggggcgtgcgcctgtggag-gg--tgcctgagggtgagtcgtgagagatgagtcaggacacttgggtgcaggccagatcctgaagggactttgtgctgtgaaaaggaattgtttctctctagcccgtaggtagttcagagccattaaacttttcaagcagagacctgatatagctagatttgtatttcagcaggatcaccctCAGAGGCCCTGTGATGGTGGGCTGTGCAGGCAGTGGATAGGGGAGAGATGGTGAAGGCCTAAGCCAGGCACATGGCAAGGAGGAGACAGGGAAGGATGTTTAGCGGTGGCC---TGGGCTCCGTGCTGCCTTCCTCACACTGAAGCCAGTCGGTGTTAAATCCCCCAGGAACTGTGCTGGAGGAAAACTGACTCAGAGCCTCGAGGTGGATGGGCCACGTTTCTGGGAGTCTGTGGTGATTCCTGTGTT-CCCCTTT---------------CCTTTGCAGTGACAAAGCTGCAGGTGAGCAAATCGAAGAGGACCCTCACCCTGGTGGAAAACAAGCCCATTCAGCTGAACTGCTCAGTCAAGTCTCAGACCAGCCAGAACTCCCACTTTGCGGTGCTCTGGTACGTCCACAAGCCCTCAGATGCCAACGGCAAGCTTATCCTGAAGACCACCCACAACTCCGCCTTCGAATACGGTACTTACGTGGAGGAGGAGGGCCTGAGAGCCAGGCTCCAGTTTGAGAGGCATGTGTCGGGGGACCTGTTCAGCCTCACCGTCCAGAGAGCCGAGGTCAGCGACAGCGGCAGCTACTACTGCCACATGGAGTAGTGGCTGCTGAGCCCCAACTACGCCTGGTACAAGCTGGCAGAGGAGGTTTCTGGGCGCACAGAAGTCACTGTGAAACAGCCAGGTAAGGCCGCAGGGCACGGCTGTCC--------TGGG s mm3.chr3 101740910 3083 + 160674399 AAAAAGGAAGAAATTGAGTTGCCAC-TATGTTTGTCAATGTCTCACCTA-CTG-TGAGTTTTGAACTCGGAACCACAAATACAAACCAAAAGGGATTGAGGAGAGCTAAAAC-TAACTGTTGTTCAGGGTCCACTCGGCCTCCCACTAAACTCCTCT--GGAGCTAATGCATTTGGTCTGCAGGGCACTCTGGGTGCATTAGATCCACACTTTGCC-GTTC-TGGTTTGCAGATGAAAACAC---TGGTCTTTCGGAAAGTCCAGGTTCTCCTAA---GG-----GGGAGGGAGCCG-----AAGCTCGC-AGATGTACCTTGCCCAGGGCAATGCTGAGACA-GGCTTGTGAGTGCTTCCTAATGAGCTGTGGGGCCTCCTGCCTCCCCCTGGCTTCCGGGTGTGTCTTCCCTTACCACACTCCCCCCCCCCCCCAAAG-GAGAGGACATGCAGAGCTTATAGTAAGAGCTGACCCCCTGCCTACATGTCAG-----------ATTTCAAAAGTATCTCTCTCTCAGGCTTCCC-AATACTTCATAATATTTTGACATGGGATGGCTAAAAA---------------------------------------------AGAGATAGAAGAAGAAGAAACTGGAAATGCTTTGAAATATTTCTCCTCCTTGGCTTGTGGCTCTTTAACCATGTGACTGAGTAGAAGTTGAGTCATAGCATCCCAGTTTAACATATGCAGTTACTATAGCAATTGAGGTTTCCTTAGTAACAGTTGCAAAAAATAATCTGGCCCCAATTAATAATACATTTTAAAGCTCTTTCTACTCTACACAGAACAACCCAGTTCATCTGGCCGAGCACCAGATGATTCAGGAGGTGCCGTCTGGACTGACTGAGATCCCGTTTGCAGGTGGAGCATTGGGTTGGAACAGGATGAAAAGGGAACAGGTAGCTTCAGGC-TCACAGGAGTCCACTCAGGAAAGCTGACCAGCAGGCCAGGGCCAGTCCAGCCTCTA--------------------------------GGATTCCCAGTGTGCCCTGACAGTCCTTGTG--GTTAAAGAAGAGGGAAAGTGGAGA----GACTGGCTGGTACCAACAGATGGAAAT-GGAGCATG-GGCCGTGGCTGATCTGATG-----------------TGATGTGTTCTCTGTGGCTGG---AGGTCTTGTG----TGTGAATTCTGAAGTCCTCCATGAGGGGAAAGTCTGCCTCAGCAACACGAGACAGGTCCTCAGAGGTGCTTTTGTAGTAGTGGTGTTGACTGTGGGACCCTGTTATGCCTT--CTCGCTAAAGCTTTAAAACCATCCTGAACGTTCGTCTGTGTGCTACTGGGCACACCGAGGAGCAGTCTGTGGCTGTCAAATGCTCTTCTTCCTT-ACACATGGGTC----TCAGCCCTGCAAGCC-TTTAACAAAGC--AGGCCAGCTAACTGGCCAGAATCTCAGGACACAACCGGGGGGCCCAGTCACACACCTGGATAGTTTCTGCACATTCCAGAGGCAGACTCCATCCAGTCTTAAGGAAGCAAGGG-CT-CTCAGCAGGGC-CTGGAGGTGGGCTCCAC---------------------------------------CAATTGGCAGAAGC-----------CCTCGCTATGGGACCTGTACCATACCCTGGGTT--TTCCTCAGCTGGCAAG-------------GTGGCTCAGAATTAAGATATGAAGAGAGGGGGCGGGGGTGGACTGCTGTTCTCAATACCAGCTCATTAAG--------AGAATTGCCTTCTCCTTTCTTCTC-TGGTTAGTA-------------------GGGAACACAGGGA--AGTATAATGAT-ATATAGAGGAAGAT-TCTCCAGTAATC----------TCCAACAACATGCATTTTACTTGGGTTTGGCTTCTTGGCAACTCAAAGATGAGCATCTGC-TCTGTTACAAGACCGGCAGCCTATGGAATTTGC-TCTCTATTATTATTATCTGGAGTTGGCCATCCCTGTTGCTTCTGGACTGTGATAGTAAGG-GGAGGGAG--CTGGTGCTGGCTCTGCTCTGTCCA-----TCACTGCCCTCATTGCTTC-----------------AGGA-------CCTGGAC-------TGGCCTCCTGTACCTGCCTGCTCCCACATCTC-----------------------------------CATATCGGAGCAAACACCGAGGGGGACCTTTGCTGCTTTCCAAAGCCTGGGCACTGGGCTAGGCTCTG-CAGAATAGGAGTGAGAAAGTCCACTGG----------CAGTGAGCACTCTGAGGCTGCAGCTGTCCCACTCTCAGGGTGTCCCC----CTGAGCA------GGGGA--TGATGGG---------AAATATCAGCTGCCTGCATGGAAA-AGCTTCATCTCTGTTCC-TGGGAGCTCGGGGTCTAAGGGA--GAGGAGAGACAGGGAGG-----AGCC---AGGTGT-CAGAGAGCACCAAGGGAGG-----------AATGGGAGACGGACAGAGATTGAGTGG-----AGAGCAGGGTCTGGCAGAGA--------------------AGACAGAACAATGGGGACTGTGGCCAGGGTTCAGGGTA--------AAGTGTGTAGGTCGGGGGAGCAGAGGAGCAGAGGGCAAGTCCTAGGAGATGAGCCAAGACAGTTGAGCAAGGGCCAGGCTCTG-AGGGGCTTCTTGCTGTCCAAATGAATT-CTTATTTAGATTGCACAGACAGTGGGGAGCCGTTGAGCATTTTAAACAAGGTCAAGCTCTGGGCAGATTGGTGTCTTGACTGG-------------------------------GTGCGGGCAGTGGCACAGGGAGAG-TGGACAGGGCAT------GGGATGTGACAGCAGGCCAGTTGGTGTGGTTATCTAACACTGGGGGAGAGGTTTTGGGGCATGCTCATTCACGCT----------------CTGTTCCC---------TGCTGGACAGCTCGAGTCTTC-AGCCTAGA-----------------CCT-----------------CTTATGTCACTCCTTC---------------CCTTCACAGTGACAAAGCTCCAGGTGAGCAAGTCGAAGAGAACGCTCACCCTGGTGGAAAACCGGGCAATTCAGCTGAACTGCTCAGTCAAGTCCCAGACCAGCCCGAACTCGCACTTCGCCGTGCTGTGGTATGTTCACAAACCCTCGGACGCGGACGGCAAGCTCATCCTCAAAACCACGCACAGCTCGGCCTTCGAGTACGGGACCTACGCCGAGGAGGAGGGCCTGCGAGGCCGGCTGCAGTTCGAGAGGCATGTGTCGGGGGGCCTGTTCAGCCTCACTGTGCAGCGAGCCGAGGTCAGCGACAGCGGTAGCTACTACTGCCACGTGGAGGAGTGGCTGCTGAGTCCCAACTATGCCTGGTACAAGCTGGCCGAGGAGGTTTCAGGGCGCACAGAGGTCACTGTGAAGCAGCCAGGTAAGAATGGAAGGTGTGGCCGTCA--------TGGG s rn2.chr2 189968485 3148 + 246339213 aaaaagaaaaaaaTTCGGTT------------TTTCAGTGTCTCCCCTAATTA-TGAGCTTTGAGCTTGGGACCACAAACACAAACCAAGAAGGAGTGAGGAGAGCTAAAACCTCCCCATTGTTCAGGGTCCATGCAGCCTCACACTAAACTCCTCC--AAAGCTAATGCATTTAATCTGCAGGGCACTGTGGGTGAATTAGATACACACTTTCCCTGTTC-TCTTTAGCAGGTGAAAACAC---TGGCCCTCAGGAAGG-CCAGATTCCCTTAG---GGTGAAGGGGAGGGGGAGGTCGGGGAGCTTAC-AGAAGCACCTTGCCCAGGGCGATGCTGAGGC--TGCCTGTGAATGCCTCCTAATGAGCTGTGGAACCTCCTGACTCCTCGGGGCTCCAGGATGCGTCCTCCC--------------CACCCCTGAGACA-GAGAAGAAATGCAGAGCTTACAGTAAGGGCTGACCCCCTGCCCATCTGTCAGGCATGCACCAAATTCCAAAAGTACCTCTCTCTTAAACTCCCCCAACACTTCATAATATTTTGACATGGGATGGCgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaACAAGAAGAAATTGGAAACGCTTTGAAATATGTCTCTTCCTTGGCTTGTGGTTCTTTGGCCATGTGACTGAATAGAAGTTGAGTCATAGGATACCAGTTTAACATATGCAGTTACTATAGCAATTGAGGTTTCCTTAGTAACAGTTGCAAAAA-TAATCTGGCCCCAATTAATAATACATTTTAAAGCTCTTTCTACTCTACACAGAACAACCGAGTTCGTCTGGCCAAACACCAGATAACTCAGGTGGTGTCGTCTGG--TGATTGAGATGC-ATTTGGAAGTGGTGAATTGGGTTGGAAAGGGATGAAAAGAGAACAGGTTGCCTCAGGCCTCACAGGAGTCCACTCAGGAAAGCTGACCAGTAGGCC-GTGCCCGTCCAGGCTCTA--------------------------------GGATTCCCAGAGTGCCCTGGAGGACCTTGTG--TTTGAAGAAAGAGGAAAGTGAAGA----------CTGGTAC--ACA-ATGAAACT-GGAGCACAAGGCCACAGCCCATCC---------------------TGAAGTGTTCGCCATGGCTCG---AGGTCT-GTG----TGTGAATTCAGAGGTCCTCCGTCAGGGGACAGTCTGCCTCAGCAACCGGAGACAGGTCCCCAGGGATGCTTTTGTAGTAATAGTGCTGGCTGTGGGACC-TGCTGTGCCTT--CTCACTAAAGCTTCAGT-CCATCCTGTACGTTTGTCTGTGTGTTCATGGGCACACGGAGGAGCAGTGCGTGGCTGTCAAACGCTCTCCTTCCCT-ACACATGGGGC----TCAGCCCTTGGAGCC-TCGAACAAAGC--AGGCCAGCTAACTGGCCAGAACCCTAGGGCGCAGCCAGGGTGC--AGTCGTCCACCCGGATGGCTTCTGCACATTCCAGCGCCTGACTCCA----GCCCTGAGGAGGCCAGGG-CTGCTCAGCAGGGC-CTGGAGATGGGCCAGCC---------------------------------------TGGTCGGCAGAAGCACTGGCTCTTCCCTCGCTGTGGGACCCGTACCACACCCTGGGTT--TTCCTCAGCTGACAGA-------------GTGGCCCAGAATTAAGATGTGAAGGGGGGAGAGGGGG--------CTGCTCTCAATACCAGCTCGCTAAG--------AGAATTGCCTTCTCCTTTCTTCTC-AGGTTAGTA-------------------GGGAACACAGGGG------TAATGAT-ATATAGGGGA-GAG-TCTCCAATAATCACCGATAATCTCCAATAACATACATTTTACCAGGGTTTGGCTTCTTGGCAACTTAAAGATGGATGTTTGC-TCTGTTATGAGCAGGGCAGC------AATGACCGTCCCTATTCTCACTGTCTGGAGTTGGCCGTCCCTGTTGCCTCTGGACGTGGACAGTAAGG-GAGGTGAGG-CTGGTGCTGGCTCTGCCCTGGCCA-----TCCCTATCCTCACTGCTTC-----------------AGGA-------CCTGCCC-------TGGCCTCCTGTAC-TGCCTGCTCCCACATCTC-----------------------------------TGTGTCTGAGTGAACACCAAGGGAGGCCTTTTCTGCTTTCCAAAGCCTAGGCACTGTGCAAGGCTGTG--GGTACAGGAGTGAGAAAACACAGTGG----------CAGGGAGCACT--GAGACTGGGGCTGTCCCACTTTCAGGGTGTCTCC-----TGAACA------GGGGA--TGATCGG---------AAATATCATCTGAC-GAATGGAAA-AGCTTCCTCTCTGTGCC-TGGGTGCTCGGTGTCTAGGGGA--GAAGAGAGACGGGGAGG----CAGCT---GGGTGT-CAGAGTGCACCGAGGAAGG-----------AATGGGAGGCAGAAAGAGATTGAGTGGGAAGGAAAGCAGGGTCTGGCAGGGAGGTGGCAGAGG---------AGACAGAACAACGGG-ACAGTGGCCAGGGTTCAGGGTA--------GAGTGTGTGGGTCAGGGGAGCTG--GAGTTGCTGAC--GTCCGaggagatgagtcaagacagttgaacttgggccaggttctg-aggggctttgtgctggccaaatgaatt-ttcccttagattctatagacagttgggagccattaaatgttttaagcaaggTCAGGCTCTGGGCAGACTGGTGTCTTGGCTGG-------------------------------GTGCGGGCAGTGGCACAGGGAGAG-TGGACAGGGCAC------AGTATGTGATAG-AGGCCAGTAGATGGG--CGACTGATACTGGGG---AGGTTTTGAGG-ATACTCAGTCATGCT------------------GTTCCC---------TGCTGGACAGAACCAGTCTCCCAGCCTAGAAGTGAG-----------CCTGGGA--CAGGTCCAGGCTCCATGTCACTCCTTCTAAGTTGCCCTCTTCCCTTCACAGTGACAAAGCTTCAGGTGAGCAAATCAAAGAGAACCCTCACACTGGTGGAAAATCGTCCAATTCAGCTGAACTGCTCAGTCAAGTCCCAGACCAGCCCAAACTCGCACTTCGCCGTGCTGTGGTATGTTCACAAACCCTCGGACGCGGACGGCAAGCTCATTCTCAAAACCACGCACAACTCAGCCTTCGAGTATGGAACCTATGCGGAGGAGGAAGGCCTGCGAGGCCGGCTGCAGTTCGAGAGGCATGTGTCAGGGGGCCTGTTCAGCCTCACTGTGCAGAGAGCTGAGGTCAGCGACAGTGGCAGCTACTACTGCCATGTGGAGGAGTGGCTGCTGAGTCCTAACTATGCCTGGTACAAGCTGGCCGAGGAGGTTTCAGGGCGCACAGAAGTCACCGTGAAGCAGCCAGGTAAGACTGGAAGGTGTGACCATCACTGTCCTGTGGG a score=15879.000000 s hg15.chr13_random 79898 1859 + 414659 TCTGGCAGGCTGCAGACCATGTGTGGACCTTGATCTGAGGGCTTAGAGGCTTCGGCCTGCCAGCCCTGTGGGGGCACCCACCCCATCTCTTCTCATTGAATGGGGCAGAGCAGGTGAGGGCATGATGGACAGATGGGCCTCATCCCCCTGCTTCCGTTGCCTGGGGTC-------------CTCGGTCAGCCTGTCTGCTCAGACCCCTGAAACTGGGGGTTGAGGAAGGACCCTCCTGGAT-CATGTGACTCTGTTCAGTCCAGGTGAGCAGGGTCCTTGGAGTGACATCTCCTAGAGCCCAGCCTATAGCCCTGAAAGTTGGGGAGAGGACCTGTTAGGAGAAGCATCCCCTGCCCTGG-GGTTGTAGAGGTGATCTAGGCTCCTCAGACCTTGTGGGGCCTCAGATGCTTACATCTCCAGCTCCTCCT--GGCATGGGCATCTGGCTGCAGCCCAGCTCTGTGGCCCCATCTCCCAGGGAACCTTTGGTGTAATCTGCCTCCCGCT--GAAACCCAGCCTCATTCAGCCCCACCGAGGCTTTCAGAGTTCAGGTCTCTCATTCAGGGTTTGAGACCCCACCGGGCTCAGAGAGACCTGCAGCCTGCAGCGGTCCCAGATCACACAGCCCCAGGGATGGGACCAGGAGCCAGCCCACATCCCACCTGCAGCAGTTCCTGTGCCTTTAAAGCCTCCCCTCCCCCCGCCCCACCCCCAGGCCACTGGGGGAGGGAAGG-AGGAGCTGGGTCACAGCAGGGAAT-----CTTAGCTTGGTTTTGGTGTGCTGCTGGACGACCAGACCGGGCGTCGGGTGAGCCCAGAAGTGAGAGCAGTTGGCTGCGCCCCAG-TGCTGTGTGAC-CCAGAGGCGCCACACACCCTCTCTGAGCTGGTGGACATCATAGGTGGGGAAGCTCAGGTCAGGGCACTCCCAtgagtgtctggaggcctgagttccattctcagctctgccatatgcttgctgcgctctagaggagttcctcttcctctccgagcctcggtttatgtacccgtgcagtgggagtgagttgcactTCGGGGTGAAGGGG-GCAAGACTTGTGTGGGCGCATCCTGCAGAGGGATCCCACAGAAGGGGAGAGCCCTGGGTTCTTTATCTGACTGGGT---CTGGGCTGGGGGGGCCTCTGTTTCTTGGCTGACGAGTTTATGTGAGTTTGAGTGAGGTATGCGGGTGGGTGAAGGAGGGCTGGGGGGAGTCACCTGACTTGTGCGAAGAAGCTCTTGAGAGAGCCGTGGCTTCTTGGAATTAAGAGGAAAGAGTGAAGCATGAACA-------------AACAGGC--CCTGGAGGATCTG--------------GCAGCCCTGAGTGGGGGTGGGGGGTCAGCTCTGGAGTAGAGCCAGAGCTGTG-ATGGGGTTGGGGGACCCTGTGTCCTTG----------GGCCATGCTTGCCTCGCTCCTGGGTTCTGTTTGTGGCTGTGGATTGGGGTAGGGCAGGGCcggttgtgcg---aggggtcattgcccaactccagggggcacctgccacctctcagctatatatatagggatatatatagttct------ttcgacaggtttccagcaggt-----------------------------tgtggttattaaa------------tcttactgaaggg-------gtgttttttctgattctca--ACTCTGTGCCGCAAGGGTGGAAACTGTGAGAGACAGATTCCAACTCCACTTCTGGGT--AGTAAGCATCCAGTCCAGGGGTGTAGACGGTCTTGGGGAAGCTGCCAGAGATCTGTACATTCTCATATCCAGGGATAGCGACTTCAGGCTGGGGGCTGGCAGGGTAAGGGGTGGGTGGGTCCCAGGCTCACCCACAGGTCTGCAGACTTCCTGGGGCCAGCtgacctcggtaaatcc-cttttgtctaagcttcagtttcctgc----------------------------------------------------------------------------------------ctgtg s mm3.chr10 75360884 1804 + 130738012 TCTGACAGGCAATAGACTATGAG--------GATCTTGAGGCCTAGAAGCTTGGGATAGCCCCCTTTGTTAGAA-ACTGACCCTATCTC-----ATTCAATG------AGAAGTTTAGAGCACTTAGAA------------ATGCCCCCACTTCCCCTGCTAAGGGACACACACACACACACACAGACTGCCAGACTACCCTTATCTAGAAAGTTGAGGAATTAGGGAAGACTTTTTAGGTCGCGTGAGACTTCCTTCAGTCCAGTTAACCGAAATACTTGGAGTAGCCCCTCCCAGC------TCTGTGGCCCAGATAGTCT---AGAGGGCCAG--------------CCTCGATCTGACAATCACTCAGGGGAAC-AGACTCCTTGGATCTTGTAGGACCTCTGAAGCTTTCAGCCATAACCTCTACTAGGGCA-AGGCATGTGGCTGCACTCTGGCTCCGTA----TGACCCCTATTGAGCCTA------AATCATCCCTCCTCTTTGATATACAGCTTCTTTAAGCTCCGCTTAGACTGTCCTGGCTCGGGTTTCTT-CTCGGGGACTG-----------------------CCTGCAGCT--CTGAGTTCTCCGAT---GCTGTTCCAGGT----TACCA-------------ATGCTACCTG-AGTCGTTTCTGTACCTTTAAAGCCTCCGC----------CCACCCCAAGCCAGCTAGGGGAGGGAAGGGAGGAGCTGGGTCACTGCTGGGGATGGGGACTTAGCCTTCCGCAAGTGTGGAGCTGA------------------GAGGGAACGCAGCAGCACGTGT--CTGGCTGTGCCCCAGCTGCTGAATGACACCAAAAGCCCTCCTCATCGTCTCTGAGCTGCTGGACATCGTAGGTGGGGGCAAATAGACTTGGGGGCACCTAAGAATGTGTGGAGACCTGGTTCTGTTCCTCAGTTCTGTCCCATGC------CATTCCAGAGGCTCTGGTGATCCTCCCAGAGTCTCTGTGTAGCCACCTGCGCAACAGGAGTGCACCACACTCCAGGATAACGGGGCGGCAGGCTCCTGTGCCCTGGTCCCCCTG--GGTTCACACAGGTAGGCAGAGCCCTA--TTTCGTACCAGACAGGAGGCACTGTGC--------CCTCCATC-CATGCCTGCC---CCTCTCTGGGCTTGGG------GTGGGGGTGGGGCAGAGACCTTTGTGGTGAGTCA--TTACCC---------AGCTCCTGGAGGCTCTGTCACCTCCAGGTCTT-------------TGAGCCTAGACACTTTATCTCTTCTATCAGGCTCCCTGCAAACAGTGCTTTTCAACAAAAAGCA-CTTTCACTTGGAATGAAGAGTAA-------AAAGGGTCTATAGATGTGTGTAAGGTTATAGG----TGTGTATTTGTAAGCATTATGGGTATGTGTGTAA-------GGAGTCTAGGTGTGTGTAAGGACT--------------CTAGGTGTGTGTGTAAGAGTtat--------------aggtatgtgtaag-----ggttatatgtataaggatatatataggtgtatgtgggtgtaAGGGGTATTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGGGGTATATGTGTGTTTGTGAGGGGATTGTAGGTATGTTTCCTGATCCTCTGTAGTCTGTACCAGATCAGCAAATA-------AGGCAGATTCCAACTTCAGGCCTGGGTGAAGTAAGTGTCCTGTC--AGGATACAGACAGGTGTGAGAG----GCCAAAGAGATCTGTGTTCTCATACCCAGGTGTTCTTAC--CAGCATATGGACTGG----------GGTGGGATG--CCCTGACCCACGTGT-GCTCTGCCGACCTCCCTGGCACAACTCATCTTGGACAGTTTGCTTTTGTCTAAACTTCAGtttctttttttttttctttgtttctttcttccttcttttcttctctctctctctctctctctctctctcgctcgctcgctcgctcgctcgctttctcTTTt a score=5011.000000 s hg15.chr13_random 81757 217 + 414659 aatggggTT------------GGGGCTGTGCT----------CTGGTTTCACCCTTGTGGCTCTGGGGTTG--TGGTGAC--AAAGCCATCAAGCTGGGTTGAAGGATTAACCAGGAAACCTCAGACTGGCTGCCGTGTCTACCTCTTCCTCCTACT-CCTCTCTCTGCTACATCCTGGGAAGCTGCTCTGCTCAGCCTAGATGAGGCT-------------CAGTTGTGTGTGTGTGCACGTGC--TTGCACGTGTGT s mm3.chr10 75362807 258 + 130738012 CTTAAGTTTCATTTCTCACTGGTGGCTGTGTTTTCATTGTGCCCAGTTTGACTCCCATGGCCCTGGGACTTCCTAGCAGCCCACAGCTCTGTGGATCTGTTGAAGGATTAGCAGAAACACTttggtctggctgttg-gtctggctgtCTTGTATACCACCCTTCTCTACAGCATCTTGGGAACCTACTTTGCTCAGCCTAGATTCAGCTTGGGGTGTATGTGCAATtgtgtgtgtgtgtgtgtgcatgtgcacatgtgt a score=40034.000000 s hg15.chr13_random 83360 1698 + 414659 CCTTGGCAGATGAGGGCCACAGGGGAATGGGCAGCACTGTCCAAAGTCCCCTGGGCTGGGTCCGCAGCTGTTCCTGGCTCAGACTTCTTGGTGGGCTGGTCAGAAACATGCAGT-AACTTGGGGCAGTTACCAGGTGGCCAAGTCTGCACTGCTGGGCTCTGTGAGCTTGGGCCAGCTCAGGCCCTCTCTGGGCCCTGCCTTTCTGGGCTGTTCA-GGTGGTTCCTTGGGCCTGGGGTGCTAATGTTTCTGGATGGGCAGCAGAACCAGTCTGCACTCAG-GGCCCCAGGCCATGTTCCTGGAACACACCTTTAGCATTGACAGCAGCGTGTGGTGAGGCCCCTTAG-TCTGGGTTCTGGTCTAGTGCCAGGGGC-ACCACTACTCCACCGCCTCCAGAGCCATCTCTGGGACA------CTGGCTGTGAGTTCAGATGTTCTGAACAGGGACAGGGAGAGCCAGAGGGACCCAGCCTGGGGCTCTCTGGAGGGGCTCGTGGGCAGACAGTGCCCTTTGGAGGGAACTGAGTCTGAAAGG--AAGGAAACCCTTTCCCCGGCTCATAGCACCTGCC---------ATCCAGGGCCCTGCCAGGGCTGCGTGAACTTTAGTCATGCGATGACAGGCCGAGTCACCGTGCCAAGTCACTGTGCGCCTCCTTGCTGCTGTGACGTCAGC-TTCCCCATCCTCCCAGCCAGGCTGGATCTCTGTGAGAGGCCTGCCTGTCCTGCACCCTGTGCGGATGCCTCCCACTGTCCACCAGGGCTGCTGGGCACCCCCTGGCTGGTCTCTTG----------GACTAGGTAAGCTCATGGGTCCTCCGGCCGCTCCTGCTCTTTCCCTGCCTCTGCTCCTCCTCGGAGGTGGCCACCCCCAGATCCCAGTCCCAATTTGGAG---GCCCCCTGAGGAGTGCTGCAGGGGGCCGCAGGCGTGGCTCTGA--GCCACTCTGGAGAGTGGGGGTGCCCAGCCAGTTCTGTGGCTGGGACTTTCCCAGGCAGACAAGTCTGTCTCTTCCTCCCCAGCAGGTGCAGCCCAGAACTGTCTTCTGAGGAAGAGGTG-CTCTCCTGGGCCCCCACTGTCCCCAGG-CCTCAGGTAAGCCCATCAGGGTCACAAGGAAGG--GGGTCTGGGTTTGAGGCCAACCATGGCAGCTGACCTACTTTCTAGCCTCAGTTTCCCCTAGTGTGTGCAGCTCTCACACTGTTTGGGTGAGAACCAGGCCTCTGGGCTTGGACATTCTTTCAGTGAGTTTT-----------GAGGGTGGAGGGATGGGAAATGGAAGCCCAGGACCTCAGCAGGGTGTCTTCCTCCGAGCCGTGGACATCTGCCTGTGGGAGGCTGGGCCCACCCTCCCTTGCTGACCTGCTCTGGGAGGAAGGGA-------CAGGGCCCAGCACTGCCTACTCCCCTCCCTGTTCTTCCCAGCAGTCTGAGCCTGGCTGGGTGCCCCCTGCTCCTCCAGGTGCCTACTTGGGCCTTTGGGTAGAGAGATTAACAGACGGGGGAGGCTGGG-----------TCATGGTTGGACCACCCCAGGATCCTGA----CTGGGGGC----TCAGCTCATGACCCTGAGCCTGGGAGAGATGAGGCCATGCCCTCCAGGGCACTCAGCATGACCCGGCCCAGTGGACGGGACTGGATAGCTTCCTTGGTGCAGGGGGCTGTCATGCTAGGACAGGGTCACTGACCAGGCCAGGCCCCTGCCCCATGACTTGTGGTGGAAATGTCCt s mm3.chr10 75363814 1473 + 130738012 CCTTGGTCAGTGAGGACCAGGAGGGAACTGG------------ATGCCCCTTGAGGCAGACCCACAGCTG------------------------------------CATCCATTTAATTTGGGGCAGGAACCATGTGGC-AGGATGGCCCTGCTGGATCATATGACTTTGGGTCAGGCCTGGCCTTCTCTGGGCCTTGTCTTTCTAGGCTGCTCCCTGTCACTGTCTGAGTCTGTGG-GCTAATGTTCCTTGAATGGTGGTTGAACCGGTCTGGAAGCTGAGGCCCCAGGCCCTGTTCCAGGAACACACGGCTGTCATTGAC------------------CTCTTAGATCTAAGCTATGGTCTAGTGCCTGGGGCTACCCCTACTTTATTGCCTCAGGAACATTTTTGAGGACATCATGTCTGTCTCTAAATTCA---------------------------CAGAGGGACTTAGCA-GGGGCTGTCTGGAAGGGTTCACCGGTGGCCTCTGCCCCTTAGAGGGAACCAAATCTGGAAAGTGGGGGAGCCCCTTTCCCAGGCTCTTAGTACCTCCCTCCTCCCCCGCCCAGAGCCCTCCTGGGGCTGCATGAACTTTAGTCACCTGGTCACAAGCC----------------TGACGCTGCGCCTCCTTGCGGCTGTGACGTCAGCGTTGACCATCCTCCCAGCCTATCTGAACCTCTTACAGAGGACTCCCTACCTCACACCCCACTCAGAAGCCTTCAGATGCCCTTCTGGGATGCTGGGCACCCCTTAGCTGACCTCTTGCCCCCCCTGGGATTAGGTAAGCACGTGGGTCCTA----------TACCCCTTTCCTACCTCTGCCCTGA---GGAGCTGCTCAACCCCAGATCCTGATCCCAAGTTGGGGTGGGGGCACTGAGCCAGTCTGTAAGGG-TGACAGGTATGGCTCTGGCTGCTTCTCGGGGA------------CAACCAGCTCTGTGGCCAGGACTTTCTT-GGTGGACCTCTATTCCTCCTCCTCCTCATT---------CCAGAACCATCCTCTGAGGAAGAGGGGTCTTTCCTGGGTCCCCACTGCCTGCAGGGCCTCTGGGAAACCCACCAGAGCTACAGAAAGGGAGGGGTCTGGACTTGAGGAC--------CAGT--------------GCCTCGGTTTCCCTCC-------CAACACCGACA-----TGGGTG-TAGCCAGGCTTCTGGCCCTGCACATTCTTTTAGTGAATCTTTGAGAGAACTTGGGGGTGGAGGGGTGGGAAATCGAAGCCCAGGCTTCCAGCAGGGTGTCTTCCGTTTGGATTGAAACATCTGCTCAAAGGAGGCTGGACCAGCCCTC---------CCCGTCCCGGGAGGAAGGGACAGGGGTCAGGGGTCAGGGCTGCCCACTTCCC-----AGGCTTTTTAGAAGGAGGAACCCTGCCTGGTGCCTTTGG-------------------GGGCTATTGGGTGGATACA-GAATGGAAAGGTAAAATTGTGCACCGTGGGTATCACGGATGGTACACCTCAGCGTGCTGAGACCCTGGGACCACTTTAAGTTTACACCTCCAAACCTAAAAGAAATGAAG-----------------CTCAAGATGCCCC--------------AACTGG-----------------------------GCCAGAGCAG------TGACCACACCCATTTCCTACC---------------------TCCT a score=5324.000000 s hg15.chr13_random 85369 360 + 414659 ATGT-GATGGGAATGTTCTGTGTCCATAATA---GATGCTGCATATTG--CTGGCCCAGCTCCTGAGG-CTCTTTGGACCTCCAGGAATCGGTGTCTCTATCAGGAACCCTTAACCCTGACCCGGACTCCCGGCTGGGACCCAGGGTGTTGGAGTGGCAGGAGCGCTGTCAGGCTTGGTGAAGGGTGTGAGCTGTCCAACGGGGCAAGGAGGAGGCAGGGCCT--GTTCTGTAGTTGGACAGACAGAGCCCTCTAGCTGCTTTCTGGAAGACTGAA--GGGCAGGTGATGTTGGAGGGAGGGAGTGCAGGCAGGGGCTGTGAGGGAGTTCAGATCAGAAACAGGTGGCGCCTGGATTCAGGCTGTGGTGGT s mm3.chr10 75365287 327 + 130738012 GCATAGATGGGAGTGTTCTGTATCAAAGATGAATGATGCCACACACGGGACTGCCCTGGCCACTCAGACCCCCTTGAAACCCTCAGTGTGACTTTCTC-ACCAGAAGTCCCAGACCCTGACCTAGGTCCTCCCCAGGGACCTGGGTACCTG---------------TATCAGGTCTAAAGAAGGGTATGAACTGTCC-CTTGGACAATAAGGA--CAGGGCCTGGGTGCCACAA-TGGATAGGAGGAGCCCAGCAGCTTCCTCCTGGGACACCAAACTGACCAGA-------GGAAGGAAGGAGTG-----AGTCTCTGT------CTTCAGGTCAGAGTCA-----TGCCTAGATTGAGACAG-GGCGGT a score=29558.000000 s hg15.chr13_random 86452 1481 + 414659 gcctgaggccccacagcaggtgagtggcaagtccagcatcagagcagggaaggctggcGGTGCCCCTTGAGCCCCCTT-------TGCCATGCT--TACCACATGCACATCCTGGGCTTCTGCAGGAATGCCCTGTCCCCTACCTGCCCTGCTCCGTGCAAAACCCTCTTTGAGCTGTGCCTGGGAGAAATGCTGAGAGAATTCATGGAAACAAATGTGTTACTGACAGCCTCTTTGCCTCCAGAGTTCAACTGGAGACAGAGAAACCAGCTAGAGGCAGAGGGAG----GTAACCCGGAGTCCCCCAGAAAGGTCTGGGCTGTGCGTGCTTCAGGTAACCTCCCTTGACCTT---------CAGGAGAACGAGAAGGCTGCCTGATCAGAGAGTCTCTGAAGAAGATTCTGTGGCTACAGGCTTCAGCAGAGTGTG-AGGGAGACCCCAGTTATTTCCTCAGCTGTTTCCACCAAATCCTCCTGTCTTTCGTGGCCAACACCCCAGGCAAGGCTTGGGGCCCCCGTCTGCTGCTGGACGGTAAGTCCTGGCCCCGTGGCAGTGAATCTGTGGGGCACTCT---GATTGTGGGCACTATGGAAGCTAAACCCCATGCTCCAGGTGGGGTGGAGGGTCTTCAGAGGACTCCTGGACAGTGCCAGGCTCTAGGCTGGGGTGGGGGACACAGGAGAAACCAGGCCAGGCCCATCCCTGCTGGAGCTTCTCCCTAAG-CAGTGGAGGCTCAGCCACT---GTGAGGAGGTAGGCCAGGCCCTGCAGAAAGAGGGGTGTGGAAATCTGG--GGGCTCCCAGGAAGGGCCACTGCTGGAGATGGGGTTCTTACCAGGATGGGCTCTGAAGACAAGCAGGGAGGATTTGGGAGGGTAGAGATGAGGCCCagagcttctggcagagggcatggcctgcacaaaggtctgggggccggacagcctgtacgtattctgggaagcaggaaggagacACAGGCCTTGTGTTTCTGAGGCCCGACTTTAGACTGTGCCCTGTTGGGG--AGGGGCCAGG---GAATGTCTGAGGCTGGGCCTGACCCTGCTCCTTACCCCGTGGGAGCAGCAGAGCCATGAAGAAGAAGTTAGTGGTGCTGGGCCTGCTGGCCGTGGTCCTGGTGCTGGTCATTGTCAATCTCTGTCTCTGGCTGCCCTCAGCCTCCAAGGAACCTGACAACCATGTGTACACCAGGGCTGCCGTGGCTGCAGATGCCAAGCAGTGCTCGGAGATTGGGAGGTGAGCGGGGC----AGGGCATGGGACATGGGCCCTGAAaactgggcaagtggacctgagcaatac----gttcacccctctgag-------------------actcagtttccccacatgtaaGCTTCGCTTGGACTCCCTCAGTAGCCTTTG------GGAAGGGGACGGTGACTCCGAGAGCAGGGTGTGGGTCTCTAGAGCCAAACAGGCCCCTTTTCTCAGTTCTAAGAGTCTCTGTCTCTTTGGATAAACTCCACTGTTTTGTTGTTTGGTTGCTA s mm3.chr10 75366174 1302 + 130738012 GCACAAAGTCCCACCACAGGTGCATACCAA--CCAGTCTCAG-----GAAGGGCCTG----GACCCTTGAACCCTTTTATACGGTTCACATGCTGCTATTACTACCAAATCCTGGGTTTACGCATGAATGCCCAGTTCTGTGACC-CCCTTCCCCG-----------------GCAGCTCTTGGGAGAAGTCATGC----ATACGTGGAAGC--------CGCTGGCAGCTTCTGAGGCTCAGGAGTTCAATGGGAGACAG-GAAGTCAGTGAGAGCCAGAGGAAGCTCCGCACATCAGGCTCTCCAGAAAAGTTCTGGGCC-----TGCCTCACACA----CGTTTGACTTTGCGATTTTTCAGGAGTGCCAGGAGGTAGCCTGCTCTAGCAGTTC--AGGGAAGATC-----------GGTCTCTGCAGAGTGTGGAGAGAGTTCCTGCCCATCCATACAGCTGTTTTT--CAAA----------------AGCCACCTCCCCAAGAAAGGTTTGGGGGCTCC------TACTGGAAGGTAAGTCTTGACCCAT--GCAGCTAGTCACTGGGTGTCTCCTTGGAAGAAGAGCGTGATAGATGTCCAACCCCAAGCTA------------------TTCCAGGAGTCCAAAGATAGAGCCAGGCTCTCTGCTAGAGTCAGGCACTCAGAAGGAAA-GTGTGAAGCCTATCACCCCCGGAG--------TAGGACAGTGGTGGCTTGGCTTCTTCTGTAAGCAGGTACCCAGGGC---------------ATGTGGAG-TCTGACCGGTCTCCTTGGGAGGGTC--TGCTAGGAATGAAGTCCACACGGGGATAAGCCCTGAAGATAAATGGGGA---TTTGTAATAGTGAAGGTAGGATCCAGAGCTTTTGGTAGAAGGAATGGCCTGGCCAAAGGTCTGGGGGCTAGACAG-----------------GAGCTGAGAGGAGGA-------CTGTGTCCCTGAGGCTTGACTTTAGACTGTGCCCAGTTGGGGGCAGGGGATGGGCTGGAGTTCTCGAGGCTGGGTCTTACCCTACTCTTTCTCACT---GGGCAGCAGAGCCATGAAGAATCGGTTTCTGGTGCTGGGCCTGGTGGCTGTGGTTCTGGTATTTGTCATCATCGGCCTCTGTATCTGGTTGCCCTACACCTCTGGGAAGCCCGAC---CACGTGTACTCCAGGGCGGCGGTGGCCACCGACGCCAAGCGCTGCTCAGAGATTGGACGGTACGTGGGTCTGCTAGGGCAAGGCAC------CCTGGAA----GGCCAGTGAGCTCGGGCATAACTCAGGTTCCCATCTGTAAAGTGGATGTAAATCGTGTCCAGTGAGCTGCCCGTC-------CTTTCCCTGTAGTCTCTTGCTAGCCTCTGTCTAGGGAAAAGGGATGGTGAC-CTGAGAGT-----------------------------CCCTCTTTTCAGCG-----------TGTCTCTCTGAAAAA-----------------------TGCTG a score=336.000000 s hg15.chr13_random 87954 36 + 414659 ctatctatctatctatctatctatctatctatctat s mm3.chr10 75367476 36 + 130738012 CTGTCTGAATTTCTTTTTTTTTTTCAAGTCTTTTTt a score=19048.000000 s hg15.chr13_random 90673 714 + 414659 AACTCGAATGGACTTCTCTTCCATCCTCCTTTGGGCAGG-TAGCAGCAGGGTATGTATGCGGTGCCAGGGTGGAAGCCTGCAGGTTCTCGTGCCTTTATGTGCCACATGGCAGGGACACACTGCGGGATGGTGGCTCTGCGGTGGATGCAGCCATTGCAGCCCTGTTGTGTGTGGGGCTCATGAATGCCCACAGCATGAGCATCGGGGGTGGCCTCTTCCTCACCATCTACAACAGCACCTCTCATGAATGCCTCGGAAGAGGAGAGGGAGAGGGGCAGGGGTTGTGGGTTGGGCCGAGGCAC-AGCTGGGTGGCCCCCAGGCTCACGTGGCATAAAGGGTTTGGG-TGGGTGGGCCTGCCTACCTGCTT-CTCCTTCTAGGAAAAGCTGAGGTCATCAATGCCCGCGAGGTGGCCCCCAGGCTGGCCTTTGCCAGCATGTTCAACAGCTTGGAGCAGTCCCAGAAGGGTAAGCCATGCTGCAGACTTGGGGCATGGGTGCAGAGCTGGCTGAGCCACCGGGAAGGGGCCTTGCCCACAGGAGCCTGCTCCCGTCAG-GGTTCAGGGGCAGTTCTAGCACCCCCCATCCCTTCCTGGCCCCATAGCACCCTCCCACAATGAGTGGTCAGGACCATCATCACCACGGTAAAGGGCCGGG--AGCTTCTGTTATTTCTGCTAAGGCCTCC---GGGGCCATTCTGTGCAGCACATGGAAAGAATAA s mm3.chr10 75368722 642 + 130738012 GTGTAG----GGTCTCGCTTCTGTCTTTTTTTGGGCAGGGTGGC--CAGGGTGTGGG-GCAGGGTCGTCCTGAGAGTCCTCAGGTTCTTGCCTTCCTTTGGGCTGC-TTGTAGGGATATCCTACAGGAAGGTGGTTCCGTGGTGGATGCAGCCATCGCAAGCCTGCTGTGTATGGGGCTCATGAATGCCCACAGTATGGGCATCGGGGGCGGCCTGTTCTTCACCATCTACAACAGCACCACAGGTGTGTGTGCATG--GTCGGGTGGGTGAGTGGCTCAGGCTATCCCTCTCCCATCAGAATGAGTTGGGTGTCTCCTGGGCTCCCTTGATAGGAGAGGTTGGGGATATCCTGGCCTGCCAACATGTTTCCTTTTTATAGGAAAAGTTGAGGTTATCAATGCCCGTGAGGTAGCTCCCAGGTTGGCCAATACCACCATGTTCAACAACTCCAAGGACTCTGAAGAAGGTAAGCCGT------CACATGAAGCA--------------------------------------GCATTCGGGAACGTGTACCTGTCCGAGGCCTGGGGACAGCTCTGGTA-------------------CCCAGGACACCCTTCCATAACAGATGGTTAA-------ATCGCCATCGTGAAAGGAGGGGTCAG-TTCTTTTATTTCTTCTCAGCCCTGCATTGAGGCACTTGTGTGT-GCACATGGAGAAAATAa a score=27034.000000 s hg15.chr13_random 96423 1439 + 414659 TCCCCAGGAGGGCTGTCAGTGGCAGTGCCTGGGGAGATCCGAGGCTATGAGCTGGCACACCAGCGGCATGGGCGGCTGCCCTGGGCTCGCCTCTTCCAGCCCAGCATCCAGCTGGCCCGCCAGGGCTTCCCCGTGGGCAAGGGCTTGGCGGCAGTCCTGGAAAACAAGCGGACCGTCATCGAGCAGCAGCCTGTCTTGTGGCATGTCTGTGGGTGCGGCCCCCTGACACAGGCAGGGCAGGCACAGCCCAAGGACCTTGCAGGCCGTAGCAGCAGTGGAGCGGCCCTCTGCCTTCAGGACCCTGCGCTGATAATGGGATGAGGAGATACAGACCCTTCCCACCACGTGTGGGGACACATTCTGAGCGTGGGGACACATTCTGAGCGTGAGGTCCCCAGTGGCCACTGTGGCTGGCCATGTGTCCTGAGTGGCAAGGGACACTAGAATGTTCCCGGAAGGGACACTAGGAGGATGAGCGCTGAGTGACAGGGCCACCCACCTGT-GACAGGCGCTGCCCCTGCTTTGTGCTGGTCTCCTGTGTGGGCAGGTGTGGGGGGT--------GGTCTAGCTAAGTCCACCCCACCTGCTGCCTCACATGAGCCCCCTCTGCCCCAGTGAGGTGTTCTGCCGGGATAGAAAGGTGCTTCGGGAGGGGGAGAGACTGACCCTGCCGCGGGTGGCTGACACCTATGAGACGCTGGCCATTGAGGGTGCCCAGGCCTTCTACAATGGCAGCCTCATGGCCCAGATTGTGAAGGACATCCAGGCGGCCGTGAGTGGGTAACCTCAAGGGCCTGGGTAAGGAACTCTGCAGTGGAAGCCCTGAGCTGTAGCCCAGAGCCATGGAGGTCCTCCTGTCTTGCCTGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGAGCCCAGAGCCATGGGGTCCTCCTGTCTTGCCTGAGCCTGCAGGAAGTTCCTGGTGGAGGAGGGTCAGTGACTAGCCATGTGGGTCCACAGCTCCT-GCTTATATCAAAACCAAGAGAGGCCACACAGTCCAGGAGAGCAAGTCCCTGTTGGGGTAAATGCAGGTGTAGGCAAGAGCCAGGGCTagggaagcactagaatacagcctgaagatccaggaggacttcttggaggaggtg-gcggctgggctgcagataactttgttaggcagagagaggaagggattcctagcagaggaacagc-tgggctaaggcccagtagagggG-GCTTTGATTCACCAAGGGGGTTACAAGGGATGAGGGTCGCCTTGAGAGAGGCATGGGGAAGGGGATTTGTGGGGCAGGGGCCTGGAGCTTGGCTGTGGCTTTCTTCAGGTAATTTTTGTCACTGTTTCATGGAGGAGGG------------TGATT s mm3.chr10 75371599 1090 + 130738012 TTCCTAGGTGGCCTTTCAGTGGCTGTCCCTGGTGAAATCCGTGGTTATGAGCTGGCACACCAACGACACGGCCGGCTCCCCTGGGCTCGCCTCTTCCAACCCAGCATCCAGCTGGCTCGCCACGGCTTCCCTGTGGGCAAGGGTTTGGCAATAGCCCTGGACAAAAAACGGGACGTCATTGAGAAGACCCCTGCCTTGTGGTAGGT----------GGCCTTATGTC-CATGTA------GCCCATCCTGGAAA------GGGCTG--------GTGGTGCTGCACTCTGCTTTTGAGAGCCTG------------------------------CCACTTACTGCATCTGGAAACACAGTCAGAGC-------------CTGATTTAGAGG-CCCCAGTGAACAATGAGG------------CCCGAGCAAGATGGGACACTGG-----------------------------GAACCCCAAGCAAGAGGAGAACCCACCCATGGACAGATTCCACCCGTGTTTCTCTTCTGCACCCTGAGGACAAAAGGGTGAGGGGTGGGTATGAGGTGTAATTGGCTTC-CCACACCTGCTGCCTTACACAAGTCCTCTCTGCCCCagcgaggtgttctgccgccaagggaaggtgcttcaagaaggagagacggtgactatgccgaagctggctgacaCATTGCAGATACTGGCCCAGGAGGGCGCCAAGGCCTTCTACAATGGGAGCCTCACAGCCCAGATTGTGAAAGACATCCAGGAGGCTG---GTGAGT--------GGACTGTAGTGAAGGACTCCACAGAAGGAGCCCTGAGT----------GGCTCTGAAATGCTCCCTGCCTAGTTTG--------------------------------------------------------------------------------------------------------GCTGACC---------------------------TCTGGGTCCTCAGGGAATGCTTGGTGGGGAAGGGTCAGCATGGATTCCCTTGGATTCGTAGCTCCTGGCTCACACC-----------AGGCTGAGCAGCACAGG-----AAATCCCTTCGAGTGTGAATAGAGGTATGGGCAGCCCTTGGGGCTGAGGAAGAACTAG-----AGGCTTCAGATCTGGAAGGATGACCTGCAAGAAATGAGCCGCAAGG--GCA-ATGGC--CGTCAGGCAGAGAAAG------------------AGGACAGCTTGGGCTAAG---CAGAAGAGGGGAGCTTTGACTCACTGGCAGGGTGACAAGGCCCAAGGGCT---------------------------------------------------------TGGTCCTAATCACAGCATTCTTGCC-CTGTTTCGAAAAGTAGGAGAATCAGCACATTGACt a score=455.000000 s hg15.chr13_random 97862 178 + 414659 AGCATGTCGACCTTTACTACTGAGGCTGGAAATTGGCGTGCCAATACCCTGTCTGTCTGGAGCTGACTCCAGGAGAATTAAGAGCCTCCCTCCCTCCCTCTATCCATTCATCGTGAGGAGAAGAGGCCAAGCAGCAGGGACACCGGCAGGAATTCTCCAGTTAGAAAAGGCCCTCTGa s mm3.chr10 75372880 120 + 130738012 AGCATATTGACTTTAACT------GCTGTAAAT------------------CCTACTTAGATT--------AGAGAATTAGGAGACTTCTCCCATCC----ACCCAGTCATCAATGGGGG---------AGCAGGAGGGGGGTTGGTAAG-------------GGAAAGATGGAGGCA a score=12887.000000 s hg15.chr13_random 99019 850 + 414659 GAAAACACTCTCTGGCCACAGATGAGAGAAGGCAGACAGGAAG-------CCACTAAGCCAAGCAGGCAGAGGGCAGGTGGCCCCAGACCAGCTGTCGGGTGGTGAGCAGTGTCAGGGAGACAGGAGTGCCGGAGCTGGTGAGGTTCCCAAGGAGGTGAGGTTG-----CCTGTGGCCTCCTCCCAGGGCACAGTCCCACCCCTC-CAGTAGTGCACTC-TGTCCTCCTTTGTAGG----------------------------TACAGGCTTTTCCTCACCA-----------------CCATGGTGCAGCCATGCCTGCCCCCAACACCAC-TGGTGCAGCTCCATCCTCCAC--GCAGTGGTGCAGCCCCATCCCAGTGCCCATTCGAGCTGCTGTCCCGTCGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACTGTGCTGAGCTGATCGAGCACCCGCTGAACATCAGCCTGGGAGACGCGGTGCTGTACATGCCCAGTGCGCCGCTCAGCGGGCCCGTGCTGGCCCTCATCCTCAACATCCTCAAAGGTGAGTGGTCGCACCACAGCCGTGTGGTAGGACCCATGACACTGCCTCTCTCTCCCCACGCCCCACCCCTGCTGCATCTCTGCTCGCCCTCCATGCCACGTCTTTCCATCACTGAGCTCCCGAGGCGTGTC---CCTGCGTCACAGCTCACCATGTCCTGAAGGAGGCAGTGCAGAGCGACAGGGCT--------------------GAAGCGGGCAATGCTCAAGGGTTGGAGGAGGAACAGGAGTCATCAGGAAGGAGAGAGGTGCAGGAGCTCAGGGCTGCAGGGCCTGGTCCAGAGGGTACC-----CTGGTCCAGTGGGTGACCCTGC-----CACTTGGTCACCGAATGGCCAGAGCTGATGCGTGACGTGAGGTCCAGG s mm3.chr10 75373013 806 + 130738012 GGAAAGACCCTTGTGCCGTAGAAAGGAAAGGTTGACCAGGAAGGAGGCTCTTCTTGAGCCTGGCA-------------------------------TAGGTGGTAAGCACCATTAGTGCCTAGGGAGTCCCGGTGATGGT--------CAGGGCTATCAGTTTGATAACCCTGTGGGCCCTTCTGATGGTATAGACCGTCTCCTCACTATGGTACAAACATATCCTCTTCAGTGGTGACCAAACTCCTTAAACAGCCCTGACCCTACAGCATTTCATTGGCCATACTTCTCGGTTTCACCCCATACCGTGCCCAATGGTAAACCCAGTCCCACGTGATACAGCCCTGCCCCCAACCAACCATGACACAACACCATCACACAGCCACT--GAGCTGCTGTCCCACGGCAGGTGGCATTATGACGGTTGAGGACCTCAACAACTACCGTGCTGAGCTGATTGAGCATCCGATGAGCATCGGCCTCGGTGATGCGACCCTGTACGTGCCCAGTGCCCCACTCAGCGGGCCCGTGCTGATTCTCATCTTGAACATCCTCAAAGGTGAGATGTCTCTCTCTAGCCCTGCTG-AGGGGCAGGGACA------------------------------------------------------------------------GAGACCCAGTGGAATGTCCAGCCTGCTTCATGGCTTGTAGCCTCCT---GGAGGCAGCGTTGAGTGCCAGGGCTCCTCACAAGGGGTGAGAAGGATAGGGGGTGATGCTTAGTAGCGAGAGGAGGAAAAATGTTCA---------GGAGGAGTCAGGGAGTTCAAGGCAGGA-AGTCTTATCTAGAGTGTGCTTCTGGCTGGTC---TACGTGATCTTCCAGAAGCCCGTAGACCCCAAGACTCTCAAGTTG--GCATGCC-------CTAGt a score=11267.000000 s hg15.chr13_random 99869 318 + 414659 CTCGGGAGCCCTCACCTTACTTCACTCTCACCACAGCCTTCTGAAGCAGCTGCTGCTATTGGTTATTAAACGCTCCTT------------GAGGTGGGCAAAGTGGCTCAGGCAGGTGTTAACCCTCTGAGCCCCTCAGAGCCTCTGGGGCTCAGCAACATGCACCTGGCTCTGATCAACCAGGGTACAACTTCTCCTGGGAGAGTGTGGAGACCCCCGAGCAGAAGGGCCTGACGTACCACCGCATCGTAGAGGCTTTCTGGTTTGCCTACGCCAAGAGGACCCTGCTTGG-GACCCCAAGTTTGTGAATGTGACTGAGGGTAAGGGGCA s mm3.chr10 75374015 307 + 130738012 ATGGCATACCCTAGTCTTA----------ACCATACCTTTCTTGCATGGCCATTGCTGTAGGTTGTTACCTATTTCCTTTCCTATGGTAGAGGGTGGGGAACATGGCTAAGAGATGTGTTAACCCCTTGAGCCCC----AGTTACT-------ACCAGTATGTACTTGGAT---ACCATTCAGGATACAACTTCTCTCCGAAGAGCGTAGCGACCCCTGAACAGAAGGCACTGACGTATCACCGTATCGTGGAGGCCTTTCGGTTTGCCTATGCCAAGAGGACCATGCTCGGTGACCCAAAGTTTGTCGATGTGTCTCAGGTAAGGGGGTA a score=5760.000000 s hg15.chr13_random 102859 579 + 414659 GGGTCCATCCTCTCTG---------TCTCCtccttgacctcctcatctcctcctcgccactgccttggggaccttggccaggctcatggcatccagcagccactcaatgtcaatacctccatgttcatctctcagcccgcccttgcccgtgaacccatgcttatttatttattttttttatact-tgcacccatgctg-----ttcag---gtc-tgatgaagtgtccaaaatcaagc----ttctgaccatccccaaacctgccccttctgcagggtttacctcgctagt------cagcaccatccttGATTCTTC------------TCTTTCtcccacccagg------ccatcatctcttgcctggttgatacccacagcctcccctttgggatttatccttatccccgtcatagctgccagagggaccctgtgaaaacactccccagcctgctcattcctctgccctaagcctgcatggcacagagcaaaagccagtttttatgggacctaggaggtcctgtgggatgggccccagcctgcatcttcatcctcttctccccaccccactccattcactctctgcctatcgctcaccagcctataccacctgcctcagggc s mm3.chr10 75376591 492 + 130738012 GGTCCCTTTCTTTCTGGCTGTGCCCCCTTTTCCTCTACCTCCCCATCCTCTCCC---------------------------ACCCATAGCTCTCAGCAGCCGTCCTATGCCCATACC---ATGTTTGCATCTTTGTC-----TTGCCTGTGAACTT-CACACAGGAACCTGTGTTCATGAGCCCACGCACCCAAGCTGAGTTTTTTAGTGTGTCGTGGCTGTGTGTCCCAAAGCAAGCAAGTCCCTAGCTGCCCCTCCATCTGCTCCTTCTTTAGTGTTTATTTTCCCAGGTAACGACAACTCCAGGCCAAAGACCTCAAGGCCACTATATTTTTCTCCCACCCACAGTGACATCTTCATCTGTCATGTGGTGGTTGTCCACAGTCTTCTCT--GGGAC----------CCCC----------CCAGATGGAACCTATGAAAATCTTTCTCATCCTGCTTACTCCTCTACCCCAAGCCTGTGTGGCTTGTAGCAAAAA--------------------------------GCCGAAGTCAAGCCTCTTCCTTCATCCT-------------------GTTCATTCTCCA--------TTATCAG-----------------AGGGt a score=64473.000000 s hg15.chr13_random 103438 2722 + 414659 ctttgcactgaccatttaggccgcattccaggctcttttcacacgttgcctcctctgagaagccctccctgaccactctgcccatacctcatgcctcttgattccccttacctggcttgtggtttc-agcactttccctgtgtgtgtttgtttttcttggcatga------gggcaggacctaaaactgtctgttccctgttgattccccagtgccaggcatgcagtgcaaactctagaaatattttttgcatgaaggaatGAGTGATTGAATGCAGCAAGGGTCTGGAGGCT-GAGGACCAGGCAGACAGACATTCAGAGTTGCTGAAACGCAACAGAGACAGGGAGTCAGACTGGTCATGCAAGGTCCTGGGCCTGCCCTTGGGTCCTGGGGAGCCACGGAAGGTTGTGGGTGCCAGAGGGTTTTGGTCAGAGTCACAGTCAGGGGCCTTCTGAGACC-----------------TGTGCCCCCTCCCCACC--CTCCCTACCCCACCTCCTCAGGCCAGCTCTGGGGTCTCGGCAGGTGGTCCGCAACATGACCTCTGAGTTCTTCGCTGCCCAGCTCTGGGCCCAGATCTCTGACAACACCACTCACACGATCTCCTACTACAAGCCCAAGTTCTACACGCCGGATGACAGGGGCACTGCTCACCTGTCTGTCATCACAGAGGACGGCAGTGCTGTGTCCGCCACCAGCACCATCAACCTCTAGTAGGGGCTGCTGGGCCGCCTGG----GTGGGAAACTGCCAGAGGTGGGTGGCCCAGGGACCACCCACTTATCCAGTCAGGTGGCTCCATCACCTCTTTTCCTGGTGGGAAACTGAGGCCCAATCTTGGTAGCTTATCCTGGGCCTCTCAGTGAGTATGTTTCAGCCTCAGTGGGTGGATAGGGACCAGGCTGGGCCAGGCAAGGTCG---GGCGCTGTCTGACCCTGCTGGGCGGTAGCTTTGGCTCCAAGGTCTGCTCCCCGGTCAGCGGGATCCTGTTCAATAATGA-ATGGACGACTTCAGCTCTCCCAGCATCACCAATGAGTTTGGGGTACCCCCCTCACCTGCCAATTTCATCCAGCCAGGTATGGGGTGGAGGTCCGGGGGTGGGGGAC-TGGGGTGGAGAGGGGCGGGTGTCCTGGGGCAGGCAGCTGACGGGCATCCCTGTCTTCTCCCATCAGCCGCAGGGAAGCAGCCGCTCTCGTCCATGTTCCCAACGATCATGGTGGGCCAGGACGGCCAGGTCCGGATGGTGGTGGGAGCTGCTGGGGGCACGCAGATCACCACAGCCACTGCACTGGTATGCGTCAC---CCCTTTTCTCCCTGGCCCTG-CCCACTCCGCAC-AGCCCCCAAGCCATGCTGATCACACTCCCATGCC------CCAGGCCATCATCTACAACCTCTGGTTCGGCTATGACATGAAGCGGGCCGTGGAGGAGCACCGGCTGCACAACCAGCTTCTGCCCAACATCACGACAGTGGAGAGAAACATTGACCAGGTGGGCCAGGGGTTGGAGAAACTGAGTCATGGTGTGTGGCCCCAGGGCATCCTGGGCTGGAGGCCTGGATCATCACAGAGTGAACAATGGTTGGTGTCCTCTCTCTAGTGCCTGGGCCATCTGGAGCCCCTGTGCCATGAGGGCCAAACCCCCTGCTCCAATGAGACCCAGCAGGCCCCAACCTGCTCTTCCTGATGACCTGGCCTGAAATGGCACCACCTGGGCTGAGGCCTGTGACCACACAGGCGTGGTTCAGGTGGCATCTGGAGCCCTGCTCAGCCTTCCCCTCTCCC-CCCAC-------------CCCCAGGCAGTGACTGCAGCCCTGGAGACCCGGCACCATCACACCCAGATCGCGTCCACCTTCATCGCTGTGGTGCAAGCCATCGTCCGCACGGCTGGTGGCTGGGCAGCTGCCTCAGACTCCAGGAAAGGTGGGGAGCCTGCCGGCTACTGAGTGCTCCGGGCAGACAAGGCTGACAAGCAATCCAGGGACAAGATACTCACGAGGACGAGGAAGAGGACTTTGGGGGACGGGCTTCCCCTGTGAGCAGCAGA-GCAGCATAATAAAT-GAGGCCACTGTGCCAGGCTCCAGGTGGCCTCCCTGGCCTG-TCTCCCCACTCTCTGGGCCTCAGTGTATTGTGTGTGAAATGGAGCCATCTGGCTGGGGAGGAACAGAGAGGTGGGATTCGGAGATCT-TCACAATG-CGGGCACTGGAACTAGCCTCAGCATCTTCAGCATGGGGAGAGCCGGGCACATGGCTGGGGGCCAGGGGAA-GGTTCACACCAAACCCTGCCCCTTCCCACCCTGATCCCTCGGACTTTGGGGCCAGGCCCTCCCTTACTGGGGCTGGGCAGTGACACTACCTAGGATCAGCCACCAGGGGGTGTCACGACCCTGGCGCTTTCTTAGGCAGAGGGTGGCCAGCTGATGCTGGGAACCTGGGCGCCTTCTCAGAC--CCGTAGGCCTCCAGCTCACCCTGCCGATGACACTGGCGGTGAAGCTGAGGTCCGAGGAATGGGGACTGGGCAACAGGCTGGAGGAAAACATCTCGGTCAGAGCCACGCCCCTCGGGGGTTCCCAAGAGCAAGCCCAGAGTGAAACCCAAGCTTGTGATCCTCTCCAGAGGGAGGCCTGGTTCTCAGGGAACAGCAAACGGGAAG-------ATGTCCCC---------AGATCCCAGGGATCAGGGCTTGGACCAGCTGGGGACGCAGCCCAGAGGGAGTGGGTCCAGAAGGAAACAGCTAGACACAGCAGCCTTC s mm3.chr10 75377266 2367 + 130738012 TT--------ACCCCTCAGGTTTCATTCAGGGCTCT------------------------------------CCACTAGA---ATGCTTCCTGCCTCTCTATTCCTGTCGTCTGGCCTCCCATTTCCAATACTCTCCCTGCCTAC---TAGTGTTCTCTCCATGTTACACTGTTCAAGACTCGAATCT------TCCCTGCTGATTCTTCAGCTCTGACCA-------CAAGTTCCATAAACAATCAC------ACAGATCATGTAA--GAACATGGCAAGGGTCTAGTGGCTTGAGG--------GACAGACAGTCACAG--GCTGGAGGTTAA-----AGAGGGTGTCGGACGGGATTTAGAAGGTACTGTCCCTA-------GTCCTGGGGAG---------GTCCTGGTTT----AGCATAGAGGTAAGATCCGCGG-CTGGGGCTTCCTAAGACCAGCTGGGACAGCCCTGTTGCATCCCCTTCCCGCCTCCTCCCT-CCTAACCTCCTCAGGCCAGCTCTGGGGTCTCGGCAGGTGATCCGCAACATGAGCTCTGAGTTCTACGCCACCCAGCTCCGAGCCCGCATCACTGATGAAACCACCCACCCAGCCGCCTACTATGAGCCTGAATTCTACCTTCAGGATGATGGAGGCACCGCTCACCTGTCTGCGGTTTCAGAGGATGGCAGTGCTGTGGCTGCCACTAGTACCATCAACCTCTAGTAGGGGCTGTGCAGCTGCTGGGCAGAGCAGGGACCTG---GGGGTGGGTG----------------------------------------------------GGTGGG------------------------------TGGGGCTCCTAGTAAGTGC-TCTTGGCCT---GGGCTGGGTGGGGACCAGGTGGGGAATGGCTGGGTTGTATATCATTATCTGAGCTGGCCTATCTTCAGCTTTGGCTCCAAGGTCCTGTCTCGGGTCAGTGGCATCCTGTTTAATGATGAGATGGATGACTTCAGCTCGCCCAACTTCATCAACCAGTTCAGGGTAGCCCCCTCACCAGCCAACTTCATCAAGCCAGGTGCAGGGTGGGAATCCTGGGATGCAGGGCATGAGTTGGGAGGGGGCTGGTACCCT-AGGCAGGCAGCAGACCAGC-CCCCTGTCTCCTCCTATGGATCATAGGTAAGCAGCCTCTTTCATCCATGTGTCCCTCAATCATCCTGGATAAGGACGGCCAGGTTCGCATGGTGGTCGGAGCCTCAGGGGGTACCCAGATCACCACATCTGTTGCACTGGTATGTGCCTTTTGCCTGCCCTTTCCTGCTCCTGTCTCTCTCTGCCCTTGCTCCTGGGCTATACTGA-CATATTGGTATCCTTTCCCGCCAGGCCATCATCAACAGCCTGTGGTTCGGATACGATGTGAAGAGAGCTGTGGAGGAGCCCCGGCTGCACAACCAGCTTTTACCTAATACCACAACGGTAGAGAAAGACATTGATCAGGTAGGCTGGGAGCTGAGGAGACAGAATCATGGTGTGGGATGAGAGAGCATCCTAGA--------------------------------GGCTGGCATCTT-----------------------------CTGAGTTACGA----CAAATCTGTGGCCCTGCTGAGACGTGCCCTGTCctttctctctctctct-----------------------------------------------------------------------------ctctctctctctctctctctctcacacacacacacacacacacCCCAGGTGGTGACTGCAGGCCTGAAGATTCGGCACCACCATACAGAAGTCACGCCCACCTTCATCGCTGTAGTTCAGGCTGTCGTTCGAGCATCAGGTGGTTGGGCAGCTGCCTCAGACTCCAGAAAAGGCGGGGAACCTGCTGGCTACTGAGTGCCCGGAAGAGGCAAGATTGACCCGCAGCCAAGGGACGAGAATGGGAACAGGAGCAAGAGTGGGACGTTGGAGAACATGCCGCCTCTGGGTGGGACAGAGGGAGCGCAATAAATGGAGGCCAC--CGCCAAGCTGCGGGAAGCCTTTGCGGGCTGAACTTTCCATATCATGGACTTTAGTGTCTTGTGTATGAAATGGAGTCATCTCACTTGGAA--AATGACAAGGCAGGATCCTAAGACTTACCGTGATGTTAAGTCATGAAGCTAACACCAAC--CTTTAA-GTGGGGGGAATCCCAC-CGTGCCTGAGAGTTAGGGGGATGGGGTAAACAGAAC----------------------------------------------ACCTAAATTGTCCTAAGCAGTGACACTTGC-AATATCAGCCACTAGAGGGCGCCCCGACCTTGCCATTAACTGGAACAAAGCAATGACA-CTGTAGCTGTGGGTGGAGAATGCTTCTAGGACAGATGTGGGCTCTCA--TTGGCCCGC-----ACTTAGGGGGTAAAACTGAA-----------GGAGAGTAGACTAGAGACAAAAACAAGGCAATTTGGCTAAGGCCATACTTGAGGTCACTTTCCAAGCACAAACCCAGAGTGAAAGCCAAGCTTG--------TCTTGCAAGAGGCCCAGTTCTCA------AACAAACAGACAGTCCCAGCAGGTCCGCCAGCTATAGAAAACCCACAGATCC--------ACAAG--GGGAACACAGCTCACAATGGATGAGCCCAGAAGAGCACCATTAGATACATCCCTCCTt a score=4811.000000 s hg15.chr13_random 106160 370 + 414659 ACCATT---GGCAGCCCCTCCAGGCCTCCCTTGGGGCCT---GCTCCCTCCTCTGTGCACAGTTCCAACACCTGGAGCAGGGTTCTGGGAAGGGCTGGTGGAGGTGGGCTGGTGGGAGGCGGTGATCACAGCCCAGCACCTGGATATCACC---------------------AGGGGCACTGGGGCCAGGGGCCAGGTGAGGCCAGGTCGGGGCTATCCTTCAGGAGCCCCAAAAACCTGGTGATTCCAAAGGGCCCATAGACAAACAGGGTTTTATGCCTGTGGAGTCAAGTCCCACTGGGTCTGAGCTCTGGAGGGCTGTGTCTCTGGGGCTCTGCAAGGGTGAGGTGGAGGTAGGCTCAA--CTGGTGTACAAGTCACTCTTCAATCCttatttta s mm3.chr10 75380039 367 + 130738012 CTCTTTAAGGGCAGCCCCTCATG--CTGTGTCAAGGTCTATAGAACTCACAGCTGTG---------ACCACGAGGTAAAGAGACACTTGGAGACAATGTAGAAGTGAGCCACCGG-----GGTAGTCACAGCCTAGGAGCTAAATATTGCCCCTTAAAGTGAGCACAAGTTGGGGGTCCCTGAGGGAAGGGACCCAGT--GGCTGGAGGAGGG-----TCCCAGGAGGCTAGAAGTCCTGGTGTTTCCAACCTGCCCATGGGAAAGCAGGGTTTT---CCTGT--AGGTGTGCTCCAT---GTCTGAGCTCTAAAGCTCTCTATCTCTGGGGCTCCTTGGGGAACACA-GAAGCTGGGCTGAAGGGGGGGGTGCCAGCCATTCCTCAATCCATATTTGA a score=2163.000000 s hg15.chr13_random 106701 264 + 414659 AGAGGAAAAGCCGTGGCCCCATTTGCAGGGGAGAAGACTAAAGC-TGGAGGGGCAGGCCTTGCTCTGGGTTGCACAGCAGCAAGAGAAGTGGGAGCTGGCCATGAGACTTCC-TGGACCC-NCACGCTGGTGGGGTACACCCTGGTTCTCCAGGTCCCATGGGGCTCAGCCCAGGACTCCTCGGGGGNGTGAGGGACTTAAATCCTCTCCTTCATTCTCATCACCCCTTCCCCCATCATTTCCTGAGGAAGGACATTCAGGGACCCt s mm3.chr10 75380406 236 + 130738012 AGGGGAGAAGGCAGGATTCCCT----AGGCCAATATATTAAGATATGGTATATCAG----TGTTTCATGCCCCACTGGA----------------CTGGCCG-GAGATTTCCATGGACCCAGGGTGCTTGAAGTGTA---CCGCGCTCTCCCAGACCCACTGCGTATAGCCCAGAGCTTCTTTGGAGACTTGGGGACTTGAGTGACCATCCCCTTTCTAGT---GCCTTTCCATGTTACTTCCTGGATAAGGGCCTTTGGAGCCACC a score=11486.000000 s hg15.chr13_random 107929 1017 + 414659 GGGACCTTCCTGGCTGTGCCTCGGGTCAGGACCAGAATGACACCCATTCGTTTCCCTGGGCCTTTGCTCGGATGGTCCCTGCACCCTGGCCTCTGCCTGATGAGGATG-----GTGGGGAGAGGAGGGGGGACGTCCCCCCACACTGCTGTCTCCACTGTTCCTGCTGCCCAGGCCTCTGGGCTTCCAGGACTGCAGCGGGTCGATGGGTGGGCTGGCCTGAGCCGAGGAATGCACTTCAGCTCCTGGTTGAGCAATGTCACTGAGGCTTGGGAGTCGGGTGGGGGCA--------GGAGAAGGCGTCCACAGG-----CCCCCATACCGTGAGAGGCAGCCGTGGGAACAGCCTACCTCTAAACAATCACTGCAGCCCAGGCTGACCAGGGGCTCTGGCCA-GACATAGGGGCCTGGCAGGCTGTGTGGCCTGTAAGGACACAGTCTGTCTCTGTGCCTCAGTTTCTCT--------------------GCTGCCCAGATGGAGGGGCCCGGACTCCAGGTGTAGACATCTGGAGCAGGCAG--TGTTCAGCTGGGGAGGAAGCGGGGAGGACTGTGGGGGCCATGTGGGAAGGATTCCACCCCACATCACCTGCACCCCTGCTGAGCCGGGTCAACGGAGCCCCTCAGTGGGTCCTCACTCCCCTGGCTGCCTCCCATTTAGGCACCCTGAGGCC-TGGGGAGAACAGAGCCAGGCCAGTGTCCCCAGAGAGGCTGTGCTGCCAGCACAGTAGTAGC---GGATT----TGGATTCAGGGAAGCAGACCTGCAGCCAGGGTGGGAAAGAGCTGCAG-GTGGGGTGGGGCCCCCACATGGCACAGCCCCCCTCCCTGGAGGTCC-ATGCTGCATTTCCAGGACAGCAAGTCCCAGGGATGGATG------GTGCCGGGTACCAAGG-GCTAGAGGCATGGTCTGTCTGCATTTCCCACATAAGTGTCTCATAGTCACCAGCATTTGATGCTGTCAAGTCCCCCTGTCCTCTGTGCAGACTGGGAAGCCCTTGTTAACCTTGGGGGTTTGGGGGACCCAG-GCCAGGCTGCA-------------GAAG s mm3.chr10 75380642 945 + 130738012 AGA-----CCTGGCCTTCCC---AGCCAAGTCCAGTATGATAGCAA------GCCTTGAGAATCCG-TAGAACTGCCTCTGAACTCTGGTCTGCGCCTGACCAGGATGTCCCAGCCAGGGACCAGGAGGGGAAGATAACCTACCCTTGTGTCTGC-TTGTTCCCCCCATACTG--CTTTGGCCTTAGGGGACAGT----GGCCCGTGAGTGGACTGGCCTACATTCAAGAATGTGCTTTGGTTCCTGGTTGAGCAATGACAT---GACATTGTAGT--GTTGGGGACAACTGGGATGGGGAAGACTCCCACAGACACTCCCCTCTTCCTCT---AGGAAGATGTGGGAACAGGCTTACAGGAAACAGCCTCCCTTGTCCAGGCTTAGCAGGGACTCTGGGTGTGACA------CTTAACAGGATGGGTGGCCAGTGCGGGCAT--TCCCTCTCTGGGCCTCttttttttttttttttttttttttttGGCATTGCCAAGCCGG-GGGGTACGA-----AGATG---------GGGGCGGGGGGCATGCTCAG-TGGAAAGAGAGTGAGGAATGATGGGAAGGCCTGAAACCAAGAGCTCTTCTGC------CCTGCACATGTATTAATTCTGATCACGAGAGCACATTGGTGGGTCCTCACTGCTCCAGCTGCCTCCCACTGGAACATCCTGAGATCATGGAAAGATAGGACCCAAGCCAG-GCTCCCAGAGGAGGAGGCTCACCAGCACAGAAATAGCCCTGAGTTCTTCTGGACTCA-GCAAGTGGGCCTCT---------------GAGCTGCAGAAAAAGGGAGGGCACTTGAGCAGGGCAGCCTCGTCCTTTAGAGGTCTAAGGTTGAGTTTATGGGTCACTATGTCCCAGCACTGTGTGTCAGCAGCACTGGGTGTCAGGGCACTGGACATCTGGCCTGCCTGCCCACTCC------------------------------------------CTTCCCACCCCATGCTCAGAT-------------------------GTTTGGATGAGGCTGTGCCAGGCTGTAATAAAACGGTCCCGACg a score=23278.000000 s hg15.chr13_random 108955 1109 + 414659 TTGAACCCG---GGTCCTGAGTGACACCACCTTGGGTCCTCCTCCTTCTGCCTCTGTTCAGCTCCACCTTGATGCTGAC-----TAGGCTGGGCCATGCGGAGAGGGTTAGGGGATAGAGATGGGAGCTGGGGAGCAGGGCTCCACTCTGGGAGGGGGGCAGCCTTGCCAGATCCAGGGCAGAGTTAAGCGGCCCCAACTCTGCTTTCCCAGAGCAGCTGAGAACCTGGGGAATGGTGTG-GAGGTT-CCGGGGAGCCCTGCCCC----TACCTGGCAACAGCAGTGCAGCAGGCACCAAGTTCTCCTGCACATTGCGACAGTGTGACCATGGGCT----CTGGCAGGCAGTAGGTGGGGCCTTTGGACCTACCAGCAGTGAGGGAGTTAACA-CAGCAGCTGA--CTTCTCTAGGCAAAGAAAACTCCCCTCAGACGCTTTGCTGCCTGGCCTCCTGCCAGGAACAAG---CAGGAGCTGAAAACTAGAAGTTGAGGCATGAGTTTGGCCACTCCGTAGTGTGCACTTGGTGAGG------GCAGCAG-CTCACCACAG-CTGCCAGCCATCTGTCCATTCACCCATCTGTCCATCTGGCAGCCCGCTGTTCAGACCTGT---CTGTCTGTCCGCCCAACTGTAAGCCCATCTCTGTCCCATtgtctatctgaccatctttctcttactgtccactttttctagctatctggcctgtctgtcgatccatcttcgtgtctgtcttcagcccccacctgt-ttgtccatctgtccaattacctgtgagtctatctatgcatcttcttgtctattca-tctgcccaaccatctgtc--cctccgtctgccCACCGGCCT-----------------CCCCTCTCCTTCTGGGCCACAGAGCCATGGCCCAGGACTGCGGAGCCATGGTTGACCTGGTCCTgctggggctggggctggggctggggctggcgctggCTGTGATTGTGCTGGCTGTGTTCCTCTCTCGACACCAGGCCCCATGTGGCCCCCAGGCCTTTGTCCCCGCTGCTGTTGCTGCTGACTCCAAGGTCTGCTCAAATGTTGTACGGTGAGTGAGACGTGGGAGGAAGCTGGGTGGCCCTTGGCAGCCAGCCCCT----CCTGGAGAAGGCgtgtgtgt-gtgagcatgtg s mm3.chr10 75381825 1020 + 130738012 TTAAAACAGCACGGTCCTGAGTG--GCTACCTTGG----TCTACCTTCAGCCCCATCTCTGTACCAGCTGGGTGATTGCATTGAGAGGCT-GCCTGGGTGGAACCAGTTGGGAG-------TGGAAGCTGGGGAATGGAGTTTCACCCTG------------------------CAGG---------AGACACCCTGACCCT---------GAGCTGTTGGGAGGCAGGAAAACAGTGAGAGAGGTTCCCTGAGTTCCATGTCCCAGTTCCCCTGG--------GTGCATCAAGCATCACATTTCCAATGGCACTGGGACTGAGGAGTCTTTGGGTGGTGTTGG--GGCAGCAGGGCAGGCCATGGGATCAACTGGCGATGGAAGAGTTAACAGCGGCAGCTGGCTCTTCTCAAGAAAAAAAAAACTCCCTGTAGA--------TGCCTGGCTTGCCTCCAGGGTTGAGCCTCGGGAGCTGAAAACTGCAAGTTCAGACCTG----TGGCTAGTTC------TGCCTCTGGAGGAGAGTGTAGCAGCAGCCTGGCCACAGCCTGCCGTCTGTCTATCCATAAACCCA---GGctggctggcttcctgtttctc--ctctgtaacctgcctggccacctatctgtaaggc--------------tgtccgtc-------------------atcctttctgtccagttgtctggcctgtgtggc------------tgtctgtctTGA---CCCATCGATCTTTCCCCTCTGTCCAATAGCCTGAGA-TCACCCTGTGTAGCTTCTTTTCCCTTCAGTTTGTCAGTCAGTTTGTCTGTCTCTGTCTGTCCACTGCCCTGTGTGTCCAGTTGCCTCCCTCTCTGTCCCTGGGCCACTGAGCCATGGCTTGGGGTCACAGGGCCACGGTCTGCCTGGTCCTGCTGGGTGTAGGTCTAGG------------TCTGGTTATCGTTGTGTTGGCTGCGGTCCTTTCTCCTCGTCAAGCCTCTTGTGGTCCCGGTGCCTTCACGCGTGCTGCGGTAGCGGCTGACTCCAAGATCTGCTCGGATATTGGACGGTGAGTAAAAAGTGGGTGTGAGCTCAGTGGCCCTTGGCAGCTAGCGGGTTGTGCCTGGAGACTGTGTAACTGTGGTGGGGGTGTG a score=3691.000000 s hg15.chr13_random 110493 601 + 414659 gattgtgtgtgggta-tgtgtatgtgtgg-gggtgtgtgtgcgcgtgtgtgtgtgtg-----tgCACGTGCACTGGCCCAGGAAGCAGGAGCTGTGTGTG--TGGGCTTCAGCACCTGCAGGGCTTGAGCGCAAGGAGACAGCCTCAGGGCCCTTGCACAGAACAGGTGGCAGGGTGTGCCCGTGGGGCAGATGGGGACTTGGGG-------ACAATGGTGGTGTGTGAGTCCATACCTGGCTCCAGGATTCAGGAGGCCCATTTGCATATC---CCAGGTGGGAACCTGTCTGGCCCCGCCTGACCCTGCTGGCCGGTGCAGGCCCCTTCAGTGAGGCCAATTCTCCAAGGCTGGGGTCTTCTCCCAGGGTCAAGGGTGAAGGGGTTTGGAGGCTCCCTGCGTGGGTACTGGCCTGCTGGGGTACACACAATGCTGCCATAGCCAGTCTGCCCCAACACCCAGCCCGGGGCCACATCTCAGGTCTCTCAGTCCTGGGGAGCCCGGTGCCCCACCCCTCACATCCTCTCTCCCTGAGTCAGGGCCTGGGTCTCGTGAGCTGAGTGACTGATACTTGGTGTCCTGGATGAGGG---CGTGGTGGAGAGGGGC---------CACAGTGGGTGT s mm3.chr10 75382806 510 + 130738012 GGTTGTGCCTGGAGACTGTGTAACTGTGGTGGGGGTGTGAAGAGGGACACGCGAGTGCCGGCTGTGCTTGCGGTGG-------GGTAAAGGCCATGTGTGGTTTGGCTTC-----CTACA------------------ACAGTCCCAGGGCCCTTGCACAGAAT-GGTGT--ATGTGTGTCCATAGGGAAGATGGGGACTCTGGACAGCATTGCAAAGATGGTGTG--AGTCTATTATTGAAGATCGGCTATACAGTGCTGGTTGGAAAGGCAGACTGGATGAGA-CCTGT--GACTTTG--------TGCCTGCTGGTTCTGACC----------------------AAGACTGGA--CCTTTTTCAGAA-----------------------------ACCTGGGCAACGGGCTTCAGGGTTCCATACATTG------------GTCTGCCCTGCCACAGAGAGAGGG---AGGTCCCAGGGC---CAGTATAAGAAAGCACGTTAC---AGCTGTCAGGACCTCCCTCTCTGTGGCAGGGTCTGGCCTTGGTGAGTGGAGTGACTGATG--TGGAGGCTGGGAAGGAGGGagagagacagacagagacagacacagacacagagagaaa a score=6819.000000 s hg15.chr13_random 111094 1049 + 414659 TTCCTGACCCTCTTCCAGGAAGG----TGCTGC------TGCTGCTGCAGG--------GAGGACACATACAGGATGCCCCTTCCTGCCCCCTGCCTCCCATTGGGCCCACAAAAGCCAGGGCAAGCCTCCCCTCCCTGCCAGCCACCT-GGTCTGCTTCCCAGAAATTCTGTCTTGCAGGCTGTTGGGAGGATCCCAGTACTTTGTAAACTAAAGCAAG------------GGAGGAGTGGCCGTTCT-----------------------------------------------------------------------------------------------CTCTCTTTGttcattcattcacct----------------------------------tttcattcattccttc---------------------------------------------ttccctccattcccccatctgtccatccttcc--------------------------------------------------------------------------------------------------CTGCCCTGATT---------------------------------GCTCACACCACCCCCCAGCCCCTCCTGACCTGGTCCTTTGGTTTC-------TCTTTAGGGCTTTCTGTCT-CCTCCCACAGGG------CTGAGAATGGCAGCTCAGGGACAAGTGGGGGCTGGGGACTGCTTAGTCTCCCCAGTGGCTCTCAGGGGATTTGAGGGTTTGACGCCAGCTGCCACCCCGGGCTGTGCCCCTCCTCTGCTCAGGAGCACATACAGGGATGCGACACCCACTTAAAC--TCGAAGTTGCAAAGATGCAAATGAGACTGGGGT-----------CTCAGGCACCAGAG---ACCACCCATGGGCACGTGGCTTTTGGGAGT--GGGGACCTGCTGCCACAGATCTCTGAAGAG----TCTGGACCTGCTGGGTCTCACCGAGTGACTGTCTGGGGGTCTCCATAGCATGCCTTGCTGTGTGCGTGATGGTCACTGGTTGGGTAGGGGTCTCTACTCTAAAGCTCCCTCTGCCGGCATCCCCTCGAACTCTCCCTTGGTGAAGAGAGGATGTGGTTTGCCC--CAGTGTTTTATCAAACAACTCT---CTCCACTTCCAGTTTTAAGAAGCTGAGAGTGGAAGAGAGCCTGGGGCTGGCCCCAGCTGC-TGCTGTGAAACAGGGGTCACTGGATGCTGGGACCCTGGCCGGGCTGGCTGGAGGCCTCAGGAAGAGGCCTGCTACATCGTCATCCTGGCCAAGA---------------------TTCCTCCCTGCAGAGGACCCTGGCCA----CACTGCCACGGGGTCTGCTGGGGCCACCAGAAGCCCATGCTCCTG s mm3.chr10 75383514 1326 + 130738012 CAGGAAACCCAGCCCATGGGAAGCCTATGCTACCCACCATGCTGCCACAGGATTACCCTGAGG-------CAAGAAGTCACTCCTGGTCCCCTGCCTCCCACTGGGGCC-CTGAAACCTGGACAAGCCTCTCCTTTTTTCTGGTCATCTGGGTCTCCTTCCCAGAATATCTGCCTGGTAGCCCACTGTCAGGGTTCAAGTGCTTTGTAAACCCAAGGCTGGGTCCTGCAGCAGGCAGAGTGGTGGTCCTGGCCCAAAATACCATGCTGTTATGCTTTTTTTTGACTGTTATTGAATGTACCTTCTGTCTGTCTGtccttccttcttccttccttacatcctttcttccttctgtccatccttccatctgtccttTGTCTGTTTGTCCTTCAAACCATCTGtccttccttccttccttccttccttctgtccatccttctttctgtctgtctgttcatctgtttttccttccatccttccttctgtctatccttccttccttctgtccatccttccttccttctgtctgtccttccttctgtctgtctttccttccttctgtccttccttctgtTTGTCCTGCCTTCCTTCCCGCCTCCCTTATTCCATCTGTCTACCCATTCTCTTCCACCTCCCTCGCTCACAGTAGCCCGCAA-CCCTGCTAACCTGGTCCTCTGAGTTCCCAGACTTCCTGGAGGATTCACATCTACATTTAACTTGGAACTCCATGGGAATAGCAGCCC--GGATCAGTAGGGAC---AGTCCTTTCTACGTCACATGGCGCTCCCAAGGGACTCAAGAG-TTAAGACCAACAGTTGCT-----CTGTCTCCAT----------------------GAGATGCAGCATCTATTTAATCCTTCTAGAATACAAAATTGTAACTGAGG-TGGGGTATGTGTGCACGCTCAGGCCCCACAGAAAACCAGCCA--GAAGAGCAGCCTCTGTGAACAAAGGGGCGTGCTTCTAC-TATCTGTGAGAAGGCTCTCTGAACAGG------------GAGCATTGGTCTGCGAGGC-----------CCAGGCTGTG-----GTTGGT---------GCTAAGAGCCTGCACTCTAAA------------------CTCTCAAGCT-TCCCCTGGTGGAAAGCGGATGTGGGTTCCCCCACAGTGTTTTGTTAAACTCTTCTTGCTTCCTGTTCTTGTTTTAAGAAGTCAAGGGTGGGAGGGAACCTA----TGGACCCAGCTGCTTACCGTAAGAGAGTGCTTG---------GTGACCATAGCCAGACTAG-----GCCTTCAGGAAGGTG-CTGTTGTGT-GTC-TCCTGGCCAAGAGCTTTTCATTCGACTTAGGCTGTCTGCCCGGGGGAAGAACCTGGCCAGTGTCACTG---TGGGAAGTCTTGGTGCTACTGGTATTCCCCCCTACTG a score=36032.000000 s hg15.chr13_random 117560 468 + 414659 CACCTTGGTGAGAATCAGGAATTGAGGCTAACCACATCTGAAATTGAGATGGGCCTTGAGTCATATAAAT--------------AGTTTGGAAAAGATGCATTTTACTACGCTGTTGAAAGAAACCATTTATTTCTCACTCCAGCAGGATAAATGGTTATCAGTATCCACTTAACTGCTCATTGACTC--TTACTGTAGAT---GAGCAGGTGGCCAGCAGCCCCTGCCCTCCCACAGTTGTAGGCCCAAGGTAACCAGCAATTGACTGGATATAATGGAAGAGTGGTGCATTCGGAGGTATCTGTATTAATGGGACCAACATTATATGGATGAGAGCTATTAGGGTGAGAAAAAGCCTGGGAGCACAATGAAATATTTAAACAA--------AACATTGTTGAAATCTCCATTGTACTTTAGTAGTTGAAGTCATTCTTGTGGTCATCACTGCCTTTCCCAAACATAAC-AAGCTACTTAATATCACATGGACCC s mm3.chr10 54759602 428 - 130738012 CATTTTAGTAAGGATCAGACATGCTGA-TGA------TAGAAACGGAGACAGGCCTGGAG-CATACCCAC--------------AGAACAGCAAGAAAGTGTCTTGTGATGCCAGTTG---------------------ACTGGCAGGGAAAACCCCTCCTGTTTTTCACATACTTGTTCATTGGCTCTTTTACAGAAGACGGCGACCAGGAAGACAGCTG--------------CAATGGGGGGCCCAAGGTAGCTTGAAATTGCTTCTGTATAATGGACCAGTTGTCCACCTTGAGATACTTCTACTATGGGAACCCACAAGATGCTGGTAACAATTAGCACAGAGACAAACAGCCTGAAA----AAAAAATAATTCAGACAGTAAACACCAGCACCACAGGCATATCTGTGG------AGTTCTTGAGTTTATCCTCACACTGTTCATTTGTTTT-CAAAACAAAGCTACGTTTCTTGACCTGATATGAGCCC s rn2.chr20 13352350 461 + 54947872 CCCCTTAGTAAGGATCAGACATTACGA-TGACCACAGTAGAAACTGAGACGGGCCTGGAG-TGTACGCACTAGCGTGTACACGTGGAAATGCAAGGGAGTATCGTGTGAGACCAGTGAGAGGGACCA-CGATTTCTTACACTGGCGGGAGAGACCTC-CCGGTTTTTCACGTACTTGTTCATTGACTCTTTTACAGAAGATGGCGACCAGGAAGACGGCTG--------------CAATGGGGGGCCCAAGGTAGCTGGAAATTGCTTCTGTATAGTGGATCAGCTGTCCACCTTGAGATACTTCTACGATGGGGACCCACAAGATGCTGGTAACAATTAGCACGGAGACAAACAGCCTG-------AAGAGATAATTCAGACAGTAAGCGACAATACCGTAGGCATATCTGTTG------AGTTCTTGACTATATCCACATGCCGTTCACTTGTTC----AAACAAAACTACGTTTCTTGACCTGACATGAACCC a score=2765.000000 s hg15.chr13_random 118028 248 + 414659 GTGCCATGAG-AAATGATGATCAGTTTGTAA---AACGCCAATAAAACAATTGCCTATATAAGCCACAA-TGTTTCATCCATATATTTCAATTTCCATGTGTAAGTATAGTTCAAATTTCAGAAATTTATT----ATTATCTAATAGAATATGCATGGTATATCAATGAGCAATTATCATACTGTTTCTATTCA-CAATTATTTGTATGATGAAAAAAGCAGACTCCCATTCTTGGATTTTTCTCAGTTTGCACACAT s mm3.chr10 54760030 243 - 130738012 ATGCTATGGGTTCATGCTAATTACCTATTAATTTAATGCCAACAATAC--TTATCTACACCCGCCATAAGGGCTTCATCTA---AGATTAATGGTTCCTCATAAAGACAG-TCAAATGTCAGCTGTTGCTTAATAATTCCTTAATACGATGCATATATTGCAGAAATG-----CCGTGTTAGTTTTCTTAATCAGTAGTTATTTGTATAAT----AAAACAGAATCCAATTTTTATCTTTTTCTTGGCTAGCAAAAAT a score=12883.000000 s hg15.chr13_random 121724 159 + 414659 GTCCTCGTTAGCGAAGCCGTGGGCGGCGACCTCGTTAGCGATGCCGTGGGCGGCGTCCTCGTTAGCGACGCCGTGGGCGGCGTCCCAGTTAGCGACGCCGTGGACGGCGTCCTCGTTAGCGACGCCCTGGACGGCGTCATCGTTAGCGACGCCCTGGAC s mm3.chr6 78523773 159 - 149950539 GTCCGCGGTAAGGGAACCGTGTGCAGGGTCCGTGGTAAGAAAACCGTGTGCAATGTCTATGGAAAGGGAACCGTGTGCAGGGTTCATGGTAAGGGGACCGTATGCAGTGTCCGTGGTAAGGGGACCATGTGCAGTGTCCGTGGTAAGAAAACCGTGTGC s rn2.chr4 83348258 158 - 183307734 GTCTGAGGTAAGGGGACCAAGTGCAGGGTCTATGGTGAGGGAA-CGTGTGCAGGGTCTGAGGTAAGGGAATCATGTGCAGGGTCTGTGGTAAAGGAACTGTGTGCAGGGTCCATGGCGAGAGAACCATGTGCAGGGTCCGTGGTGAGGGAACCATGTGC a score=1149.000000 s hg15.chr13_random 121883 104 + 414659 GGCGTCCTCGTTAGTGACGCCCTGGACGGTGACCTCTTTAGGGATACCATGGACGGTGTCCTCGTTAGCGATGCCCTGGGCGGCGTCCTCGTTAGCGATGCCCT s mm3.chr6 78523932 104 - 149950539 AATGTCTATGGAAAGGGAACCGTGTGCAGGGTTCGTGGTAAGGGGACCGTATGCAGTGTCCGTGGTAAGGGGACCATGTGCAGTGTCCGTGGTAAGAAAACCGT a score=13790.000000 s hg15.chr13_random 121987 200 + 414659 GGGCAGCGTCCTAGTTAGCGATGCCCTGGGCGGCGTCCTAGTTAGTGATGCCCTGGGCGGCGTCCTCGTTAGTGATGCCATGGACGGGGTCCTCGTCAGCGATGAGC--TGGACTGCGTCCTCGTCAGCGAT-GCCCTGGATGGTGTCCTCGTCAGCGATGCCGTGGACGACGTCCCCGTCAGGGATGCCCTGGGCGGCGTCC s mm3.chr6 78524036 201 - 149950539 GTGCAATGTCTATGGAAAGGGAACCGTGTGCAGAGTCCGTGGTAAGGGGATCATGTGCAGTGTCCGTGGTAAGAAAACCGTGTGCAATGTCTATGGAAAGG--GAACCGTGTGCAGAGTCCGTGGTAAGGGGGATCATGTGCAGTGTCCGTGGTAAGAAAACCGTGTGCAATGTCTATGGAAAGGGAACCGTGTGCAGAGTCC s rn2.chr4 83348197 199 - 183307734 GTGCAGGGTCTGTGGTAAGGGGACCAAGTGCAGGGTCTATGGTGAGGGAACCGTGTGCAGGGTCTGAGGTAAGGGGACCAAGTGCAGGGTCTATGGTGAGG--GAAC-GTGTGCAGGGTCTGAGGTAAGGGA-ATCATGTGCAGGGTCTGTGGTAAAGGAACTGTGTGCAGGGTCCATGGCGAGAGAACCATGTGCAGGGTCC a score=16682.000000 s hg15.chr13_random 122187 226 + 414659 CCGTCAGCGATGCCCTTGA---CGGCGTCCCGATCAGCGATGCCC---TTGACGGCGTCCCCGTCAGCGAGGCCCTG---GACGGCGACCCAGTCAGCGAGGCCCTGGACGG---CGTCCCCGTCGGCGAGGCCC---TGGACGGAGTCCCAGTTGGCGATGCCCTGGGCGGTGTCCTCGTTATCGATACCGTGGACTCCATCTTCATTAGCGATGCCCTGGACGGCGTCGTCGTTGGCGA s mm3.chr9 79091232 220 - 124467299 CCG---ATGATGACCTGGAAGGTGGTGCCCTGGCTAGAGATGCCCGGGCTGGAGATGCCCGGGCTGGGGAAGCCTGAGGAGGAGGTGCCCTTGCTGGAGAGGCCTGAGGAGG---TGTCCTTGTTGGAGAGGCCT---GAGGAGGTGTCCTTGCTGGAGAGGCCTGAGGAGGTGCCCTTGCTGGAGAT------------GTCCTTGCTGGGGAAGCCTGGGGAGGTGTCCTTGCTGGAGA s rn2.chr8 81199087 196 - 127756414 CTG---ACGATGACCTGGAAGGTGGTGCCCGGGCTGGAGATGCCCGGACTGGAGATGCCCGTGCT---------------GGAGATGCCCGTGCTGGAGAAGCCTGAGGAGGAGATGCCCTTGCTGGGGAAGCCTGAGGAGGAGGTGTCCTTGCTGGGGAAGCCTGAGGAGATGCCCGTGCTGGA---------------------------GAAGCCTGAGGAGATGGCCTTGCTGGAGA a score=2576.000000 s hg15.chr13_random 123731 27 + 414659 GTTATCA-ATGCCATGGACTCCATCTTC s mm3.chr5 113243332 27 - 149719773 GTTAGGA-ATGCTGTGGCTGGGATGCCC s rn2.chr14 75033516 28 + 107821284 GTTAGGAGATGCTATGGCTGGGATGCCC a score=6327.000000 s hg15.chr13_random 123758 52 + 414659 GTTAGCG-ACGCCCTGGACGGCGTCCTCGTTAGGGATGCCGTGGATGGCCTCC s mm3.chr5 113243332 52 - 149719773 GTTAGGA-ATGCTGTGGCTGGGATGCCCTTAGGGGATTCTGTGGCTGGGATGC s rn2.chr14 75033516 53 + 107821284 GTTAGGAGATGCTATGGCTGGGATGCCCTTAGGGGACTCCATGGCTGGGATGC a score=2628.000000 s hg15.chr13_random 123810 164 + 414659 TCGTTAGCGATGCCCTGGGCGGCGTCCTCATTAGTGATGCCCTGGGCGGCGTCCTTGTTAGCAAAGCCCTGGGTGGCATCCTCGTTAGTGATGCCATGGACATGGTCCTCGTCAGCGATGCCCTGGACGGCGTCCTCATCAGCGATGCCCTGGACGGCGTCGTC s mm3.chr5 113243384 164 - 149719773 CCTTAGGGGATGCTGTGGCTGGGATGATCTTAGGGGATGCTATGGCTGGGATGATCTTAGGGGATGCCATGGGTGGGATGATCTTAGGGGATGCTGTGGCTGGGATGATCTTAGGGGATGCCATGGGTGGGATGATCTTAGGGGATGCTGTGGCTGGGATGATC a score=5349.000000 s hg15.chr13_random 123974 44 + 414659 ---AGCGATGCCCTGGACGGAGTCCTCATCAGCGATGCCCTGGACGG s mm3.chr5 113243548 47 - 149719773 TTAGGGGATGCTGTGGCTGGGATGATCTTAGGGGATGCTATGGCTGG s rn2.chr14 75033517 47 + 107821284 TTAGGAGATGCTATGGCTGGGATGCCCTTAGGGGACTCCATGGCTGG a score=1651.000000 s hg15.chr13_random 126007 21 + 414659 AGTG-ACGCCCTGGACGGCGTC s mm3.chr5 113243335 21 - 149719773 AGGA-ATGCTGTGGCTGGGATG s rn2.chr14 75033519 22 + 107821284 AGGAGATGCTATGGCTGGGATG a score=6510.000000 s hg15.chr13_random 126028 55 + 414659 GTCGTTAGCG-ACGCCCTGGATGGCGACCTCGTTAGGGATGCCGTGGATGGCCTCC s mm3.chr5 113243329 55 - 149719773 GCTGTTAGGA-ATGCTGTGGCTGGGATGCCCTTAGGGGATTCTGTGGCTGGGATGC s rn2.chr14 75033513 56 + 107821284 GCTGTTAGGAGATGCTATGGCTGGGATGCCCTTAGGGGACTCCATGGCTGGGATGC a score=2077.000000 s hg15.chr13_random 126083 164 + 414659 TCATTAGCGATGCCCTGGGCAGCGTCCTTGTTCGCGAAGCCCTGGGTGGCATCCTCTTTAGTGATGCCATGGACGGGGTCCTCATCAGCAATGAGCTGGACTGCATCCTCGTCAGCGATGCCCTGGACGGCGACACCATCAGCGATGCCATGGACGTCGTCCCC s mm3.chr5 113243384 164 - 149719773 CCTTAGGGGATGCTGTGGCTGGGATGATCTTAGGGGATGCTATGGCTGGGATGATCTTAGGGGATGCCATGGGTGGGATGATCTTAGGGGATGCTGTGGCTGGGATGATCTTAGGGGATGCCATGGGTGGGATGATCTTAGGGGATGCTGTGGCTGGGATGATC a score=4451.000000 s hg15.chr13_random 126247 38 + 414659 TTCAGCGATGCCCTGGGTGGCGTCCCCGTCAGCGATGC s mm3.chr5 113243548 38 - 149719773 TTAGGGGATGCTGTGGCTGGGATGATCTTAGGGGATGC s rn2.chr14 75033517 38 + 107821284 TTAGGAGATGCTATGGCTGGGATGCCCTTAGGGGACTC a score=41382.000000 s hg15.chr13_random 148562 200 + 414659 CCTGTCATCTAAAGCCAGACCCTGGCCTCAGCACAAGCTCCAGTGCAGACCCCAGCACCCACTCTGCCTGGTCCTGCTCTTCCAGGGCCCTTCCCTGGTGGCCGTGTGGTCAGGCTGCACCCAGTCCTTTTGGCCTCCACTGTGGACAGCTATGAGAGACGCAACAAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGG s mm3.chr7 97164762 200 + 134401573 cctgcagccccgggccagaccccagcctccgcgccagccccagcGCAGACGCCGGCGCCTTCGCAGCCCGGGCCCGCCCTCCCGGGGCCTTTCCCGGGCGGCCGCGTGGTCAGGCTACACCCCGTCATTTTGGCCTCGATCGTGGACAGCTACGAACGCCGCAACGAGGGAGCTGCCCGAGTTATTGGAACCCTGTTGGG s rn2.chr1 118987028 200 - 276301343 cctgcagctccgggccagacctcaacctccacgccagccccTGCGCAGACGCCGGCGCCCTCGCAGCCCGGGCCGGCCCTCCCGGGGCCTTTTCCTGGCGGCCGCGTGGTCAGGCTACATCCAGTCATTTTGGCCTCGATCGTGGACAGCTATGAACGCCGCAACGAGGGAGCTGCCCGAGTTATCGGAACCCTGCTGGG a score=15143.000000 s hg15.chr13_random 148762 65 + 414659 AACTGTCAACAAACACTCTGTGGAGGTCACCAATTGCTTTTCAGTGTCATACAATGAGTC---AGATG s mm3.chr7 97167900 68 + 134401573 AACTGTTGACAAGCACTCGGTAGAAGTCACCAACTGCTTTTCGGTGCCACACAATGAGTCAGAAGATG s rn2.chr1 118992161 68 - 276301343 AACTGTTGACAAGCACTCGGTAGAAGTCACCAACTGCTTTTCAGTGCCACACAATGAGTCAGAAGATG a score=19735.000000 s hg15.chr13_random 148827 81 + 414659 AAGTGGTTGTTGACATGGAATTTGCTAAGAACATGTATGAACTGCATAAAAAAGTTTCTCCAAATGAGCTCATCTTGGGGT s mm3.chr7 97168187 81 + 134401573 AGGTGGCTGTTGACATGGAATTTGCTAAGAATATGTATGAATTACATAAAAAAGTCTCCCCAAATGAGCTCATCCTAGGCT s rn2.chr1 118992445 81 - 276301343 AGGTGGCTGTTGACATGGAATTTGCCAAGAATATGTATGAATTGCATAAGAAAGTCTCCCCAAATGAGCTCATCCTAGGCT a score=32831.000000 s hg15.chr13_random 148908 139 + 414659 GGTACGCTGCCGGCCATGACATCACAGAGCACTCTGTGCTGATCCATGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCCATATGAGCATCAAAGCCTATGTCAG s mm3.chr7 97168561 139 + 134401573 GGTATGCCACAGGCCATGACATCACAGAACACTCAGTGCTGATCCATGAGTACTACAGCAGGGAGGCCCCGAACCCCATTCACCTCACGGTGGACACAGGTCTCCAGCATGGGCGCATGAGCATCAAGGCCTATGTCAG s rn2.chr1 118992842 139 - 276301343 GGTATGCCACAGGGCACGACATCACAGAGCACTCGGTGCTGATCCATGAGTACTACAGCAGGGAGGCCCCGAACCCCATTCACCTCACAGTGGACACGGGTCTTCAGAATGGGCGCATGAGCATCAAGGCCTATGTCAG a score=20213.000000 s hg15.chr13_random 149047 84 + 414659 CACTTTAATGGGTGTCCCTGGGAGGACCGTGGGAG---TGTTCACACCTTTGACAGTGAAATATGCATACTATGACACTGAATGCAT s mm3.chr7 97170343 87 + 134401573 CACTTTAATGGGTGTCCCTGGGAGGACCATGGGAGTGATGTTCACACCTCTCACAGTGAAGTACGCGTATTATGACACTGAACGCAT s rn2.chr1 118994291 87 - 276301343 CACTTTAATGGGCGTCCCTGGGAGGACCATGGGAGTGATGTTCACCCCTCTCACAGTGAAGTATGCGTATTATGACACTGAGCGCAT a score=24860.000000 s hg15.chr13_random 149131 104 + 414659 CAGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGGTTGGACTCTCAAGTGACCTGCAGCAAGTAGGAGGGGCATCAGCTCACATCCAGGATG s mm3.chr7 97170792 104 + 134401573 CACAGTTGACCTCATCATGAAGACGTGTTTTAGCCCCAACCGGGTGATTGGACTCTCAAGTGACTTACAACAAGTGGGAGGGGCCTCAGCTCGCATCCAGGATG s rn2.chr1 118994826 104 - 276301343 CACAGTTGACCTCATCATGAAGACATGTTTTAGCCCCAACCGGGTGATTGGACTCTCAAGTGACTTACAGCAAGTGGGAGGGGCCTCAGCCCGGATCCAGGATG a score=17925.000000 s hg15.chr13_random 149235 404 + 414659 CCCTGAGCATAGTGTTGCAATATGCAGAGGATATACTATCTGCAAAGGTGTCAGCTGACAATACAATCAGGAAGGTGGGCCACTTCCTGATGAGCCTGGTTAACCAAGTACCGAAAATAGTTCCCGATGACTTTGAGACCATGCTCCACAGCAACATCAATGACCTGTTGATGGTGGCCTACCTGGCCAACCTCACACAGTCACAGATTGCCCTCAATGAAAAACGTGTAAACCTGTGAAGCCACCCCAAGCAGTACGCTTGCTGGTCTAAGTCTTAACCCCAGGACTCAGAAGTGAAGGAAAAATGGGTTTTTTGTGGTCTTGAGTCACACTGAGACAGTCAACTGTGTGTGACTC-TAATAAACGTAGCCTACCTTTTGTAAATTAAAGAAAAAAAAAAGAAG s mm3.chr11 27136535 361 + 122862689 CTCTAAGCACTGTATTGCAGTATGCTGAGGATGTGCTGTCTGGGAAAGTGTCTGCTGCCAACAC---------GGTAGGCCACTTCTTGATAAGCCTTGTCAACCAAGTACCAAAGATAGTTATTGATGACTTTGAGATCATGCTCAACAGCCACATCAATGACCTGCTGCTGGTGACCTACCTGGTCTATCTCATCCAGTCACAGATTTCTATCAACAAGAAACTTGTAAACCAATGAATCAGACCCAAGAGGCACTTGTGCTGGTTGAGGTT-----------------------------------TTCTTTATGGCCTTGACTCACAGTGACTCAGTCAGATGCTTGGGACTCAAAATAAACATAGCTTATCTTTTGTgaagaagaagaagaagaagaaag a score=2796.000000 s hg15.chr13_random 161366 32 + 414659 CCCACACATTTTCTATCTTTCATTTCCGTTTT s mm3.chr6 90422930 32 + 149950539 CCCACATATTTTCTTTTCTTCATTTCCTCTTT s rn2.chr4 63428023 31 - 183307734 ACTATACAGTCCCTCT-CTTCATAGCTCTTCT a score=797.000000 s hg15.chr13_random 174283 44 + 414659 GAAAAAG----AACCAGGTGTGACTATTTTAAT-----------GCAACCTCTTGGTTG s mm3.chr6 91740634 44 - 149950539 gaaaaGG----GAGAAAGTATAATCCTGTTAAT-----------CCATCCTCCCCAAAA s rn2.chr4 83891286 56 + 183307734 gaaaaagccataaGGAAATAT---CCTGTTAATGATTTACGCACCTGTCCTCCCCCAAA a score=95735.000000 s hg15.chr13_random 174327 1132 + 414659 AAATAAAATGATTAAAAGTAGTGTTTATCTTGTTGATAACTGAGAGGCAAATATTAAAAATTTTGCTCTGAGATGAAGAGAGTTCACATGATAAGTCTCTGGGATGTGAACTAAACTGGGAAAGCACCAGGACCATTTCTAAGACATACAGTT-----AA---TTTGGGTTTGgataaacagaataatgttccccactccctaaaaaagatatttacatccaagttcttagatactggaaatacattacaatttatggcaaagagaatat--aaggttgcaaatgggatcaaaattgccgatatgctgatgaaaaataagaagactattatgaattatcatggtgggcccagtagaatcataagcatcAAAAACCATGGAAGAGTGAAGAATAAACCATATCAAAGTGATAGATCATGAGAAAGACTCAATTGGATATATTTTTAATTGTTTG-----CTTTAGTGAGTCT-TTCCACTTTAGCATATATTTTATTCAATTCAACTGTGCAAATGTGATTCATTTTATATGC---CTGTCACTGAATTGGGTGCTAAAAATAAAATGAGAGAACAAAAAATAACAAAAATTGATTTCTAAAGATGGAGGGCAAAGGGCATTAGGAATATAGATAGTGTGCACCCTATACAGGCATGATTGTAAATGTATTCattatatatagaaagtaataattatatatatataaaattatttGGCTTAGAAAAGAGTGCAGGGGGTACATTATCAATAATTTAGCGTCAAGGTTA-ATCAAGAAT-AAGTGAGTAAAATAAAAAT-----AATAAT----------GATGGTAATAATTTCA----AACACTGAAGAAAGAACATTGA---TGATATGAAGTC-ATTTTTT--TTCAGATCTACAAAATATGTTTCTTCTATGCCATTAGGATGAACACAGTTTTCACTTATGTTATCTTTTAAAAATGCCTTTAGTCGTCAAGCTAGCATTAGAATCTCAGCCAACATCTTCCATCTTCTCTTCCACATTTTTACATTCTTTCAGGATCACAGGCCTAAGACCCATGATCTGGTCACCTGTCATTTGACCTTTGTCCACCTAGTAATGCTCTTCACTGCAATGGAGTTTTTGTCTCCAGACATGTTTGAGCCACTGAATTTTCAGAATAACTTTAGATGTAAAGC s mm3.chr6 91847905 1076 - 149950539 AAAAAAGAAAAAAGAAAATAGTGGT----TTCTTGATAACTCAGA-------ATTAGGTCCTTAATCTTGAATTC----AAGTTCACAAAAGATGTAAATTGGATGGAAACTAAATT-GGAAGCCATATAGGCCCATTTAAAACCATGTTGCTTATACAATTAATAGGGTCTAGA-GAGTACACTAATAATCTTC---CCCT-------GTATCTATGTCTTTCACTCTAGATTCTGAAAATGTA--ATATTTCATGGGAAAAGAAACAT--AAAA----AAGATGAATTAAGATAGATATTTTGCTGAGTAAAACT---CATGTTACCATGAATTGTAACTGTGATTTCATAAGAATTGTGAGT----CAAAATATGGATAATTGCAAAATACAGCATAGTAAAATCACACATCATGATGTATTCTCA------------TCTGATTGTTTGGATATCTTTTATGATTTTACTCCAGGTCACCATAGTTTTTGTTCATT-----TTTGCAAATGGGATTGATATTCTATGCTCTTTACTACTGTTTTATTTGTTACATATAAAATGAGAAAATTTAAAGAAATAAAATTGAATTTCTAAGGTATGAGACTCAGGTGAAATGCAGGGA----AAATGTTTTCTGTGTAGAT-----ATTCTAAATTTATTTAATGTCTGT----AATATTCTCTATATATAGGAGATACT--------------------TGGAGGGTATAT----AACAATGTAGGCTAAAGATTATATGAAACATTAAATGAGAAAAATATAATTTACGCAAGAATTTTTTAGGGAAATAG-AATGATTATATAGTAATACTGTGAGGTGAATCATAAGTTTGATAAATAATCTATTATTT--TTCAGATATATGAAATAGACTTCCATTATGCTATTAAGATAAATACACTTTACATTTATGTCTTCAATCAAGAATGTTCTTTATTTCCAATCTGGACTTGGAGTTCTAGCCAATATGTTTCTACTGTTTTTTTATATTTTCATAATCCT---AGGTCACAGACCTAAGCCCATGGACCTGATCTTATGTCAATTTTCCTTTGTTCACATACTGATGTTCCTCACTGCAGGGGATATTTGGCTTTCAGACTTATTTGAGTCACTGAACATTGAGAATGACTTCATATGTAAGGC s rn2.chr4 83891338 1084 + 183307734 CAAAAAGATAAATGAAAATTGTATT----TTCTTCATACCTGGAA-------ATTAGTTCCTTAACCGTAAATTG----GAGTTCACAAATGGTTTAAGTTGGATGGGAACTAAACT-GGAAACCATCTAGGCCAATTTATAACCATACTGCTTATAAAA---ATTTGGTTTGAA-AGGTACACTAATGGTCTTC---CACT-------ATATCTATGTCTTTAATCCTAGATTCTGAGGATGTA--AGATTTCATGAAAAAAGAAACATGAAAAA----AAGATGAATTGACATAGACCCTTTGCTGATTAAAACTGC-CATATTATTATGAATCATGACTTGGACTCCATTAGAATTGTGAGT----AAAAATAAGGATAATTGCAAAATAGAGCACAGTAAAATTATGCACTATGATGCATTCTCA------------TCTGATT---TGGATATCTTTTATGATTTTCCCCCAGCTCACCACACTTTATATTCATT-----GGTGCAAATATGATTGATATTTTATGCTCATTTCTACTGCTTTAGTTGTTAAGTATAAA-TAAGCCAATTTAATTCAATACAATTGGATTTCTAAGGTATGAGACTCAGGTGTAATACAGGAACACAAACTGTGTCTTTGGTATATGACTGACTATGAATGGATTCATTATCCAT----AATATTCATTCTATATAGGAGATACT--------------------CAGAGGGTACAT----AGAAATGTTGGCTATATACAGCATGAAACATCAAAAGAAAAAGAGATAGGATATTCAATAATTAGTAGAGAAAATAG-AATGATTACATAGCCATACTGTGAAGCTAATCATAAGTTTAATATATAATCTATTATTTCTTTCAGGTACATGAAATAGACTCCTATTATGTGTTTGCTATGAATACACCTTCCATTTATGTCTTCATTCAAGAATGTCCTTTATTTCCAAACTAGACTTGGAGTCCTAGCCAATATTCTTCTACTGACTTTCTATATCTTCACAATTCC---AGGTCACAGACCTAAGCCCATGGACCTGATCTCATGACAATTAACTTTCATTCACATCATGATGTTCCTCACTGCAGGGGAGATTTGGCTTACAGAATTATCTGAGTCACTGAACATTGAGAATGACTTCATATGTAAGGC a score=2765.000000 s hg15.chr13_random 175763 21 + 414659 -TAAAGCTTTCTTCTATTTGCA s mm3.chr6 59712173 21 - 149950539 -CAAATCCCTTGCCCACTTGCA s rn2.chr4 119928865 22 + 183307734 GTAAATTCCTTGTCTACTTGTA a score=655.000000 s hg15.chr13_random 176762 15 + 414659 CAGCTTCCTTATATT s mm3.chr6 30746058 14 - 149950539 cAGCTTG-TTATATT a score=16602.000000 s hg15.chr13_random 176777 309 + 414659 TTTAACCTTTT-GCTATAGAATTATAACTAAATGAGTTCATTGATTTGTGTGT--------GTAAAAGTGCTTAGTACAATGCCTAGACTTATCATTTATCAATAAATATCATTCTTAAAACTGACCATAAA-AATATTAGAAAAGTAGAATATCTAGACAATATTTTAGAAAAAGGGAGCTTAAAGAA-TTTGGAAAATGTCATTCATCTG-----TCCAAATGTCTGCCAAGCTAAGGCTCTCACTACAGGGAGAGGTATAGTTTAGATGTTAGAGTGTAAACCCAATTTTT--------------------------TAATGTGGTCATAGTTATTAATTC-------------------------TTTATGC s mm3.chr6 30746072 292 - 149950539 TTGAATCTTTCCTTTTCGCAGTGGTAGTGACAATAATTCACTCACATGTGCAG---------ACATACTTTCTTGTTTAGTGCTTATTTTTAGCATTTATCAATAAATGTGATTTTAGTGAC----TAAAAATAGTGTTAGAAAAGT---------------CTTTCTGGATAAAAAGAACTAAA--AGCTTTGGGAAAT----TTCTTCTG-----TGTAAATGAAAG---AACTAAGGGTCTTATTATAGACTG----ATTGTTATC-------AGTGTAAACCTGA-------------------------------TTGTGTGTTCATATTTGTTTGTGGGCACATGTGTGCATGTGTGTAGGGGTTAATGG s rn2.chr4 31723430 347 - 183307734 TTTAATCTCTC-TTTCCATGGTGGTGGTGACAAGAGTTCACTCACATGTGCAGTGACAAGTGACATCCTGATTTATCTAGTGCTTATTCTTAGCATTTATCAGTAAATGGGGTTTCAGTGACAGACTACAAATAGTGTTAGAATAGT---------------CCTTCTGGATAAAAAGAACTAAAAGAGCTTCAGAAAAT----TCCTCCTGACATTAGTCATTGACAG---AACTAAGGGTCTTAATGCAGACTG----ATTATTTACA--CTAAAGTATAAGCCTGATTTTTTTTCTGCATATGTGTGTGTGGTATGTTTGTATGTTCACAATTGTTTCTGAGCACAtgtgtgcatacatgtagaggttgatgg a score=5637.000000 s hg15.chr13_random 177086 34 + 414659 --CTTGCAATTTGTTGTAATTCAGTAAAAGCCTTTT s mm3.chr6 30746364 36 - 149950539 GACCTGAAGCCTGTTGTAATTCAGAGAACGGCTTTT s rn2.chr4 31724027 36 - 183307734 TGCCTGAAGCCCGTTGTAGTTTAGAGAAAGGCTTTT a score=151269.000000 s hg15.chr13_random 177120 1179 + 414659 TTCATCCTGAAATTTAAAAAAATTATCTAGTGGTTTCTTTTTTGCTTTCATGGATTCACTGTCTTCAAATAAACTTTTGAACTTTGGGGAATTTATGCCATATGAGGTTTGAGGTTTTGACTCAACTTTTTTCCCATTTAGATATACAGTTATGGCAACCTCTCATTGTATAAATGTACGGGTTATTATTTAATTTCAGAAACAATCACAATATGTTATCCTATTGGATACTAGTTACAAGTTTTCTTTGTTTTATTTAGATTTCTGAAACTGATGAAAAAG---AAGACCTGCTGCATGAAAACTGCTTGATGCAAGATGAAATTGCCTGGCTCAGGCTGGAAAAAGACACAATAAGAAACCAAAACCT------GGAAAATAAATACTTAAAAGAATTTGAAATTGTGAAAAGAAAGCGTGAAGACCTTCAAAAGGCTCTAAAACGGAATGGGGAAACATTAGCAAAAACGATAGCCTGTTACAGTGGACAGCTTGCTGCTCTGACAGATGAAAACACAACGCTGCATTCCAAACTGGAGAAGCAAAGAGAGAGTAGGCAAAGACTGGAAACAGAAATGCAATCATGTGGTTGTAGACTGAATGCTGCTCTATGTGATCATGATCAAAGTCACTCATCAGAAAAAGATCAAGAGCTTGCTTTCCAGGGCACAGTAGATAAATGGTGTCATTTACAGGAAAATTTGAATTTTTGTAT-TCT--------------------GATTCTTTCTCTGCAACTTTCCAAAGCTGAGAGTAAGTCCAGAGTCCTCGAAACTGAGCTCCATTACACAAGAGAGGCTCTGAAAGAAAAGGCTTTGGTTTTTGAACACGTGCAAAGTGAGCTAAAGCAAAAACAGAGTTGAATGAAGGACACTGAAAAAATGTACAAAAGTGGATACAGTACAATGGAAAAATGCATAGAAAAGC------------AGGAAAGATTTTGTCAACTAAA----CAAAATATGTTGCTTCAACAGCAACTGGATGATGCTCGCAACAAAGCTGACAATCAAGAAAAAGCAATACTTAATATTCAAGCCAGATGTGATGCTAGAGTAGAAAGCCTTCAAGCTGAGTGCAGAAAGCACCGTCTTTTACTAGAAGAAGACAGTAAAAGGATGGTCAATGGATTGAATCATTTGAAAGAAAAAGAACCCCAATATGAAAAAGAGAAAGCAGAAAGAGAAGTAAGTAT s mm3.chr6 30746400 1200 - 149950539 CTAGTGCTAAGTTTCTTACGAAGTA--------TTTCTCTCTTAATTTCATAAAGTCATTGTCCTCTATTACATTTATGAACTTTTAGGAATTATACTACTATAAGCTCAGAAATT---AGTTTATTTTTCTAGTGGTTATATGT---GTCTCAGTG--CTGAGTTCGAAGAACT--ACATGCTGTTCTTGAATTCTAT-----ATGAGATTTTGACATTTCATATACTGCTGGCT--AAATGTCTCTTTCCTTTCTTAGGTTTCTGTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCTGTGTTACGACTGGAAATGGACACAATAAAAAGCCATAACCAGGAGAAGGAAAAGAGGTATCTTGAGGATATTAAGATTGCAAATGAGAAGAATGACAACCTTCAAAGGATGGTCAAGCTGAATGAAGAAACATTTACAAAAACCATATTCCAGTATACTGGACAGCTTAATAGTCTTAAAGCTGAGAACACAATGCTGAGTTCTAAGCTGGACAACGAAAAACAAAATAAGGAGAGACTGGAAACAGACGTTGAGTCGTTCCGATCTAGGCTGGCTTCTGCTCTGCATGATCACGCTGAAATTCAGACAGCAAAAAGAGACCTAGAAATTGCTTTCCAGAGAGCGAGAGATGAGTGGTTTCGTGTGAAAGACAAGATGAATTTCGATATGTCTAACCTCCGAGATAACAATGAGGTTCTCTCCCAACAGCTTTCTAAAACTGAAAGGAAGTTGAATAGCCTAGAAATTGAGTTTCATCACACGAAAGATGAGCTTCGAGAGAAGACGCTGGCGTTAAAGCATGCGCAGAGAGACCTGAGCCAGACCCAGTGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAACAAGGCAAAGTGAGCAAGTTCATGGGGAAGCAGGAGTCCATAGAGGAGAGGCTGGCCCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGACGCTGCCAACAAGGCCGAGAGCAAAGACAAGACCATAGTCAACATCCAAGACCAGTTCCAGGATGTGCTAACCAGGTTCCAAGCTGAGAGTCAGCGGCACAGCCTGAGGCTAGAAGACAGAAACCAGGAGTTAGTCAGTGAGTGCAGCCATCTAAGAGAAAGACTGTGTCAGTACGAGAACGAGAAAGCCGAAAGAGAGGTGAGTAT s rn2.chr4 31724181 1202 - 183307734 cCAGTGCTAAGTTTCTTAAATAGTA--------TTTCTCTCTCAATTTCATAAAGTCATTGTCTTCGATTATGTGTGTGAACTTTTAGGAATTATATTTTTATAAGCTCAGAAATT---AGTTTATTTTTCTAGTTGTTATATAT---GTTTCAACA--CTTAGGTTGAAGAACTTTGCACACTGTCCTTAGATTCTGT-----GCGAGACTGTGACATTTCATAGACTGCTAGTT--AAGTGTCTCTTTGCTTACGTAGGCTTCTCTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCCATGTTAAAACTGGAAATGGACACAATAAAAAACCATAACCTGGAGAAGGAAAGGAAGTATCTTGAGGATATTAAGATTGCAAATGAGAAAAATGATAACCTTCAAAGGATGATAAAGCTGAATGAAGAAACGTTTACAAAAACAATATTCCAGTACAGTGGACAGCTTAACAATCTTAAAACTGAGAACGCGATGCTGAGTTCCAGGCTGGACAACGAGAAACAAAGCAAGGAGCGACTGGAGACTGACGTCGAGTCATTCCGGTCTAGACTGGCTTCTGCACTGCATGAGCACGCTGAAATCCAGACAGCAAAAAGAGACCTAGAAACTGCTTTCCAGAGAGCAAAAGATGAGTGGTTTCGTTTGAAGGACAAGATGAATTTTGATATGTCTAACCTCAGGGATAACAACGAGGTCCTCTCCCAACAGCTTTCTAAAACTGAAAGAAAGTTGAATAGCCTCGAAACCGAGTTTCATCACACACAGGGTGAGCTCAGAGAGAAGACGCTCGCTTTGAAGTGTGTGCAGAGAGACCTCAGCCAGACGCAGAGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAGCAAGGGAAGGTGAATAAATACATGGGAAAGCAGGAGTCCATAGAGGAGAGGCTGGCTCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGATGCCGCCAACAAGGCCGAGAGCAAAGACAGGACGATAGTGAGCATCCAAGACCAGTTCCAGGAGATGCTCAACAGAGTCCAAGCCGAGAGTCAGAAGCACAGCCTAAGGCTGGAAGACAGAAATCAGGAGTTAATCATCGAGTGCAGCCATCTGAAAGAAAGAATGTGTCAGTACGAGAATGAGAAAGCAGAAAGAGAAGTAAGTGT a score=9982.000000 s hg15.chr13_random 178299 92 + 414659 CAAGAAAAATAAGTATTTTTCAAACTTCCTGAAGCAAAATTTAAAGTAATATTTGGTTACAGCTGAATATTGGATCTAGTTGA----ATATAAAAA s mm3.chr6 30747834 91 - 149950539 cAAGAAAGATAAACATTTTAAAAACATCCCAAAGGGAAATTCAAAATATGGTTT-GTTAATACTAAGCATTAAGTCTAGCTAA----AAAAAAAAA s rn2.chr4 31725630 88 - 183307734 cAAGAAAGATAAATATTTTAAAACATGCCAAAAGGGAAATTC-------TGTTT-GTTAATACTAAGTGTTAATTCTAGCTAAATATAAAAAATAA a score=47792.000000 s hg15.chr13_random 179575 463 + 414659 TGTGTGGTGATATTTTTTAAAGTATATGCTTTAGAGTTAAATATTATTAATGGTTTAATAATAAGGTGATTTGTAAAATCAGTAACAAAAATAACATCAGGTAGCTGTGAGACAGCTTCAATGAAAACGAGATGATGTCTTAAACAAACAATCAGCAACAAAAGCTTTGCTGGATGCTTCATCGCGTCACTGCATCTATTTAGAAAATGAGATGCAGGATTCAAGGAAGAAATTAGACCAGATGAGAAGTCAAGTATGTATGAAACTTTGCATGCCAACAACTGTTCATCTGTAGCTAGCTAACTAATATAAAGTGTTTTGGGGTACTAATTTTAGTGGATGGCTTTCTTTTGtatttttattataattaattttattaaaattttataGTGGATGGCTTTCTT---TTGTATTTT--CCttattattaattttattaaaattttattataaCGCACCTATATCT----------------TAA s mm3.chr6 30748441 433 - 149950539 TGTGCAGTGATATTCCTCAGAGCGTGTG--GAAGAAAGAAATAGTATGAGTAGAT--GTTGTAATATGTTTTATAAAATTAGTAACAAATGTCTTACCAGGTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAGGTATGTATG-AATTTGGTATGCCAGC-----------------------------------TGCTCGGGA----TGGTGTCAGCAGACAGCCTTCCTCTGGATTTTCATGTAATCCACCATTAC-----CTTTATGATGAACTTATTTCTTAAATTCCACTTTGATTTTACCATTTTTTTCCTTTGATTTTA--AAGAATGCATTTGCTTCTTGTGAGGGAACAGGCTTAA s rn2.chr4 31726255 434 - 183307734 TATGCAGTGATACTCCTCAGACTGTGTG--GAGGAAATAAATGGTGTTAATATAT--GCTGTGATGTGTTTTATAAAATTAGTAACAAATGTCTCATCAGGTAGCTGTGAGGCAACTTCAGCAAGAACTGGCAGATACCCTAAAAAAGCAGTCCATGTCAGAGGCTTCGCTAGAGGTTTCCTCCCGTTACCGCAGCAGTCTAGAAGAAGAGGCCAGAGACTTAAAGAAGAACTTAAGTCAGCTCAGAAGTCAGGTGCGTATG-AGTTTGGTATGCCCGC-----------------------------------TGCTCAGGA----TGACTAAAGCAGGCCACCTCCCTTTAGGTTTTCATGTAATCTGCCATTAC-----CTTTACAATGAACTTATTTCTTAAACTCCACTCTTATTCTACCTTTTTTTTTCTTTGACTTAAACACAAATGCATTTACTTCTTGTGAAGGAACAGGC-CAA a score=22724.000000 s hg15.chr13_random 180038 299 + 414659 -TCTCTTTTATTCTGCCATTTTTTTATGCATATTTTTTCTTAA-ATATTTAACCTTAGGAAAGTTGAGAATTATGCATCATTTCTCACAGAAGTTGAGAGAGTTTTTTTTCCTGTTAAACAGTCTATTTTTAATGATTTCTCTGTTGGCATGGTGAGGCAAGCCAGATTAATTCAGAGGACAATGTCTAATGGAATGTTTCAG-AAAATTATCTTATTTTTAGTTTCTACTTTTCTGAATGTATAAAGAACCTGTGTGTACTTATTTCATAGATTTCAGGTTAACT-----TGTTCAGAAAGGCCAT s mm3.chr6 30749022 244 - 149950539 ---cATCTTTTTCTTATAATTTC--------GTCTTTCTTTAATATATTTATCCTTGTGCAAATTGAGAGCTATATATCGTTCCTCAGAGATTTT---------------------------TCTATTCCAATTGA---------------GATAAAGTAGGTTA----AACTC---AGATTCTGTTT-ATGGAAAGTTCCAG-AAAATCTGCCTACTTTTTACCCCCACTTTTATGAGTGGGTACAGTATCTTTG-AAACTTATTTAATGAACTTCAAGATAACTTGAACGATACAGAACGGCCAT s rn2.chr4 31726830 246 - 183307734 cATTTTTTTTTTCTTAAAATTTCT------TGTCTTTCTTTAAGATATTTATCCTTATGCAAATTGAGAACCATATGTAATTCCTCAGAGAGATT---------------------------TCTATTCCAATTGA---------------GATAAAGTGGGTTA----AACTCAG-AGATGCTGCTT-GTGGAATGTTCCGGAAAAATCTGCCTGCTCTTTACCCCCACTTTCGGGGGTGGATACAGTATCTTTG-AAACTTATTTAATGAATTTCAACATAGCT-----GGTACAGAAAGGCCA- a score=2271.000000 s hg15.chr13_random 180342 26 + 414659 TGAATAAATTTTTATTTTGATGAAAA s mm3.chr7 84844557 26 + 134401573 TGCATAGAATTGTAGTTTTCTCCTAT s rn2.chr1 144680087 26 + 276301343 TGCATAGAATTTTAGCTTTCCCCTAA a score=69332.000000 s hg15.chr13_random 180374 465 + 414659 CTCTCTATTGGGCTCAGAGAGCACATTTTGTCTCTATATGAATATGGACAGTTAGCATTTGCCAACATGTA----TCTATTTTCTCTTATTTATAGAAAAAGCTAAAC-------TAAAAAAGGGGTTATAGAAGGTCAGCAAAGGATGAGTTTGAGATGTTCGGGTTGGTTAAGTGGGCATTTAGACAACAAGGTTTCTCCTTTGACATGTTTAAT-------------GGACATCTTTGCAGTTTAAGATGACGCTTTTA----AATTACTTCTCTCCTAATGATGACTTGAGTCCTGCTATTCAATGGGAGAGTCAATAAGATCCTGTAGGATCTTATTTGGAACTGACTTTGT------CGATTTT-------AATTTTGTTCCTG-CTTGTTTTTAAATTTTCTTGTTGT------------------------TTCTCTAGAAAGGAAAGATGACGCTTAGTTTTAAATATTTAAAAATGTGCAAGTTGCTTTGCTATAATAAAACTAAATGCATACATACAAAA s mm3.chr2 30333454 489 + 181423755 CTGTATATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATACAGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCTTGTTTAATaaaaagaaaaaaaaaaagaaaaaaaGGGGGGGTATAGACGGTGAGC-AAGGGTGGGTTTGAGGTGTCTGGG--G--TAGGTGGGCATCT-GACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGTGGTTTAACAGACATCCTTGCAATTTAAGGTGACACTTAAA----ATAAAATTCTCTCCTGATGATGACTTGAGCCCTGACACTCAATGGGAGAATCAGC-AGAACCTGTATGGTTTTATTTGGAGTTGACATTCT--GTTGTAATTTT-------AAtttttttcttt--ttctttttctttttttttttttt--------------ttttttGGTTTTCACTGGAAGGAAAAA--GATGCTCA-TTTTAAATGTT--GAAGTGTACAAGTTGCTTTGTTACAATAAAA-TCAGTGTGTACACAAAGGA s rn2.chr3 9076125 513 + 165924081 CTGTATATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATACAGACAGTTAGCATTTACCAACATGGATCTGTCTACTTTCTCTTGTTTAATAAAAAGGAAAAAAAAAG---AAAAAGGGGGGGGATAGACAGTGAGC-AAGGGTGGGATCGAGGTGTCGGGG--GGGTATGTGGGCATCT-GACAACATGGCTTCTCCTTTGGCATGTTTCATTGTGACGTTTAACAGACATCCTTGCCGTTTAAGGTGACACTTAAATAAAATAAAA--CTCTCCTGATGAAGACTTGAGCCC-GCCACTCA-CGGGAGAACCAGC-AGACGCTGTAGGGGTTTATTTGGAGTTGGCATTCTCTGTTGTAACTTTCATCTTTAGtttttttctttccttttttttctcttttttttttttctctttttttactctttttCGGTTTTCACTGGAAGGAAAAA--GATGCTCA-TTTTAAATGTT--GCCGTGTACAAGTTGCTTTGTTACAATAAAA-TCAATGTGTACACAAAGGA a score=18596.000000 s hg15.chr13_random 180895 279 + 414659 TGAGGTAATCCTT-------------------------------TATCTTTCC------ACATTTTACCAGTTTGCAAGTTTGAGTATTTAACTGATAAAATGTAATTCAAAAGCAAGAAGAATGTTGTGTTTTAGTTCTAGAGcaggggtctgtgaacttttctgtaaagggccagatagta---ttacttaagactttgtgagccataatatcattgttgcaataactca---agccctgcagttatagcacaaaagtagccacgaacaatatgcagattgaagggatgtggcagtgtcccactaaaa-ttaattacaaaa s mm3.chr7 108886272 255 + 134401573 TGAGGCAGTACTT----------------------------------TTTTTC------TCAGTTACCAATTTGGTCAATTTGAGTAT----CTGAGAAAGTATGGTTTCAAAAC---CAGAATACCATGTTTCAGTCATAAGACA--GACCAGCGAC---------------Tcagataataatagcattttagatttggtggg-gataagatccctcttgcaataattcagctaatgccacagcaattgcatagaagttcccct---cagcacgcagacaataggatgatggctgtgtactaataagattttaGCACGAAg s rn2.chr1 169841859 279 + 276301343 TGAGGCAGTACTTGGACCATGCAAATTTTCAACATTATAGGATTTCCTTTTTCCCTCCCTCATTTACCAATTGCGTCAATTTTAGTGT----CTGAGAAAGTATGGTTTCAAAAC---CAGAATGGCAT-TTTCAGTCATAAGACA--GATCAGTGAC---------------TCAGACAATA---GTATTTTAGATTTGGTGGG-GATAAAACCCCTCTTGCAACAATTCAGTTAACTCCACAGTGATAGCACA-AAGTTCCCCT---CGGAATGCAGACAACGGGATGGT-----------CATAAGATTTTAGCATGAAg a score=1110.000000 s hg15.chr13_random 181174 116 + 414659 aacaggtaatgggATG-ATTTAT-CCTAGATTCTGAC---CTTTTTTAAATAAA-AAAGATTGTGATAGTCTAAAATa-----ttttatatatattttgttgattcattcatctactgatggacatt s mm3.chr7 108886712 103 + 134401573 catacatacatacatacatacatacatacatacatacatacatacatacataca-AAAT--------------AAAGAAGTCTCTTTAAAAATAATTTGAGCATGAAAACAT---------GATAGG s rn2.chr1 169842326 99 + 276301343 cacacatatgtacatacatatatacatacatacatacatacatacatacatacatacat--------------acata-----catacaAAATAATTTGAGCATGAAAGCAT---------GACAGG a score=59137.000000 s hg15.chr13_random 181290 584 + 414659 taggtcatttccaaatGTAATTTTTTTTAATTCTTTGTTTTAGTTTCAAGAAATACAGGATCAACTTACAGCTACTATAAGATGTACTAAGGAGATGGAAGGTGACGCACAAAAGTAAAATTTGAAGCAGCACACAAAATAACTTGAGTATTTATAAAGCAAGAGAGCACTGTAGTATGAAAATTGTATCAGTTATGATAATAAGTATGTCTTTGTGAAGCCAAAAAA--GTTTCATCTGTAAGCTATATTGACATACATCATTTTTCTTCATTATTC---------CTAA-ATTTTGCATA-------------------TTATCAACAAAACACAGGTAGAAAAATGACACAGTAGCCCAGTCATCTACTTTTGCGATTGCTAAGAATTTGTGTAATTATACCTTCAGAAGTT-----TGTTTAGAATTTACATG---TTTTAAAAACAATTATATGTGAGAGTAATTATTTTAAAATGCACATTTTAGGCTTGAAGTAGAAAATGCCATGATGAGAAAAACGATTAAAAAACAGGATGACCAAATTGAGCGGCTTGAGAAAATCCTGCAGCGTTCAAGTTTGGTAAGCTGATCTCTTAAT---TTCTGTCATACTGAAAAGGA s mm3.chr6 30752081 596 - 149950539 TAGCTCATTAGTAAAGG----TTTGTTTTATTCTTTATTCCAGTTGCAGGAGGCGCGGGATCAACACAGAGAGGCTGTACACCATGCTGAGAAGATGGAAGACCACCTACAAAAGTACAGTTT-ACACAGTG-------TGACTCCAGTGTTTAGGAAGCAAATAAGCAATATATTGTGGCTACTGTGCCAGTTATGGTAGCA-----GTACCTCTGAAGCCAGGACACCGCTTCACCTCTAAGTTTCA--GAAGTGCATACCTTTAAAACAGGATGCAGTTAGGGGTTCGACCTTTGCATGCAGATGTGGGCTCAATTCCTAACCCACAAAACATAGCTAGAGAAAT--AATAGTTATCAAATCATCTACATTTCAGACTTTTAAGAATTTAAGAATTTA----TTAAGTAACTGTTGATTTTCA--AATTTTGTGatattttaaaaattacttta--taaatataattattttaaaatata-attttaGGCTTGAACTTGAAAAATCCAAGTTCGAAATTACAATTAAAAAGCAATCAGAGGAAATTGATCAACTTCAGGAAAACCTGTCAAGGGTGAATTTGGTAAGTGGTCCTCTTCCTGGAGTCTTCCCTGCTGAGAGGGA s rn2.chr4 31730102 578 - 183307734 AAGCGTCTCGGTAAAGG----CTTGTTTTATTCTTTATTCCAGCTGCAAGAGGCGCAGGACCAACACAGAGAGGCTGTTCAGCGCGCTGAGAAGATGCAGGACCACCTACAAAAGTACAGTTT-AAGCAGTG---------ACTCCAGTGTTCATAAA-CAAATGAGCAGTGTATTGTG---------TCAGCTGTGGAAGCA-----GGGCCTCTGAAGCCAGGGCACTGTTCCACCTCTAGGTTTCT-TGAAGTGCACACTTTTAAAACAGGATGTAGTTAGGGGTTAG-CCTGTGTGTGAAGGTGTGGGCTCCATTCCTAACCCACAGAGCATAGCTAGAGAAAT--TATAGTCACCAAGTCATCTGCTTCTCAGACTTTTAAGAATTTA------------TTAAGTGGCTGTTGACTTTCAGAAATTATGTGatatttttaaaattgcttta--taaatttaattcttttaaaataca-attttaGGCTTGAACTTGAAAATTCCAAGTTCAAAATTACAATAAAAACGCAATCAGAGGAAATTGAACAACTTCAGGAAAACCTGTCAAATGGGAATTTGGTAAGTGGTCCTCGTCCTGGATTCTTTCATGCTGAGAGGGA a score=3244.000000 s hg15.chr13_random 181874 17 + 414659 -ATTTTATTTTTCCAGTA s mm3.chr3 124795892 18 - 160674399 AGTTTTACTTCTTTAATA s rn2.chr2 127836449 18 - 246339213 AGTTTTACTTCTCTAATA a score=3571.000000 s hg15.chr13_random 182286 17 + 414659 ATAATGTCTCTTGTTTG s mm3.chr7 108903415 17 + 134401573 ACAATATCATTTGTTTG s rn2.chr1 169860455 17 + 276301343 ACAATATCATTTGTTTG a score=42050.000000 s hg15.chr13_random 182303 381 + 414659 ACTGAAACATTATAAGTAATATTTGATTTATTTCAGATGCT------------GCCAGGTGT---TCAAGAGCTAGATGAAGGTATGTTGCCAAAATTTATGAATTAAATTCAAAT-----CACTGATTTCTGAAATAAACTGTAAGTAGTGAACGGTATTCCTCTCAATTGCTTGGTTAATACATGCTACATTAAATATTTTTTCTTACACACATCTAGTGAAAGATGTGAAAACATAATCATTCATAGTGAAGGGTATACTTATGCTTTGTTACTTCATCATGTTCCATAGCTTTAAAAAAATCACAAGAAGTCTGTGTATCTCTTTTTTTCTGGCCCTACACTTTTCT----TCTGCCACCCCTATAGAACTGTCAGCCTGCACACTGAAACTGTTCTCAGA s mm3.chr3 124808460 380 - 160674399 actcatatattataaataatatCTGACTGATTTCAGATGCTTTAGGAATGGGAACAAAGTATAACCAGAGAATTAAGACAAGGGA-GGTGTCAAATCTTATTTATTGAATTTGGGTTAATGAATTGATTACTGAAATAAATTATAAACATCTAATGGTATTGCTTTCA---------TTGGTAGTTTCTATGTT-TCTATTTGTTCTTACA-AAACCAAGTGGAAGGTAGGAAAAGACAAGCATCCTTAGTGAAGAGTGTACTTATAC---ACCATTTACTCCTGTCCTACCACTT----AGAATTTTTGAGACCCTCTGTACC-----TTTTCTGGCTTACCACTTTCTTCAC-TCCGAAATCCTTATGAAACTATCAGCCTGCATGCTGAAGCTCTCCTTAAA s rn2.chr2 127851576 374 - 246339213 ATTCATATATTATAAATAATATCTAACTGATTTCAGGTGCTTCAGGAGTGGGAACGAAGTATAACCAGAGAATTAAGGCAAGGTA-GGTGTCACATTTTATTTGTTGAGTTTGGGTTGAT-AACTGATTCCTGAAATAAAGTATGAACCTCTAATTGTTTCACCTTCA---------TTGGTAGTTTCTAGGTT-ACTATTTGTTCTTATG-AAACCAAGTTGAAGGCGGGAAGACTCAAGCATCCTTAGTGAAGTGTGTATTTACAC---ACCATTTATTCCTGCC------CTT----AGAACTTCTGAAATCCTTTCTACC-----TTATCTGGCTCACTGCTTTCTTCACTTCTGCAATCCTTATGAAACTATCAGCCTGCACACTGAAGCTATCCTCAAA a score=5021.000000 s hg15.chr13_random 182684 134 + 414659 AAACAAAGGCATCATCAACTTCTCAAGGTTAAGGTAGTGATTTAAGGCTAACAGACCCCACACTCATGTGATAATAATTAGTTAAGCAATTACAGGTCACAAGCAGTCACCTGACCAGTGACATTTTAAATCTC s mm3.chr7 108903742 82 + 134401573 AACTG----------------------------------------------------CAACAGTCATCTACTGATACTTAGTCAAGCAGTCACACTTCCTAAGCTGTCACTTGACAGGTATCATTTTAAATTCC s rn2.chr1 169860760 73 + 276301343 AACTG----------------------------------------------------CAACAATCGTCTACTGA--------CAGCTAGTCATACTTCCAAAGCCGTCACTTGACAAGTATCATTTTAAA-TCT a score=6927.000000 s hg15.chr13_random 182818 119 + 414659 TAGTCATTGACTTTGTCATTGGTTTCCTTTTGCACCTGGGA-AAAGTTGA--AAATTCCTTAGCATGGAATCAAAACTCTCACATCAGTGTGGTTCTTGTCAGGTTATTCAGCCTTATCTTT s mm3.chr3 124809405 116 - 160674399 CTAGGATTTATTCCCTTATGTG-----TTTTGCTCAGGGGAAAAAGCTTAAGAGTTTCCTTATCCTGAGCTGAAAATACCCAAACTACCTTTATTCCAGACA-GTAACTGAGACTTACCTCT s rn2.chr2 127852422 111 - 246339213 CTAGGATTTATTTCCTTATGTG-----CTTAGCTCAGGG---AAAGCTCA--TGTCTCCTGAACACGAACTGAAAATTTCCAAACCGCCTCTATTCCAGACC-TTAACTCAGACGTACCTCT a score=13123.000000 s hg15.chr13_random 183487 74 + 414659 GTTAACTGTGAAATCATTTAGATAAAGAATATAATT----CTTTTTCATTCTAACT---TCTGAATTTAAATCTGAATCCT s mm3.chr7 108904841 81 + 134401573 GTTAACTGCGAAGTCCCTAAAATAAAGATTGTAAATCTTACTTTTTCTTTCTAGCTGCAGCTGAACTTGAGTCTTGGTCCT s rn2.chr1 169861444 81 + 276301343 GTTAACTGTGAAGTCCCTGAAGTAAAGATCGTAATTCTTACTTTTTCTTTCTAGCTGCAGCTGAACTTGAGTCTTGGTCCT a score=29668.000000 s hg15.chr13_random 183869 428 + 414659 TGCATTAAATATG--ACACTTGTTTTGTTTCTTTTGGCTATAAGGAGAAAATGTCATTTTGTATACGAGTGAGCACAGAGGAGAGAGAATGCGGGAAAGAACAGAATGGGCCAATAATTTTTTACTAAATACTCCAGTTCTCAGCTTTTT---------AAATCAACAGAC-AAAATGAATCACCTAAACCTAAAATCTTTGTGAATAGT------ATAAATTGTCTTTTAAATTAAATGCATATATTTTTATGTTTTACTTTTTCAAGACAAAAGCGGGATA-TTAGTACAATATAAGA---------TTTATAGAGGAGCAAATTTCTTGAGATAGGAAACCCTTAAAAGCAGTATTTAAAGTGCTTAAATACTGTCACATATGTTTAATA------------------------------ATCATA--------ATACTTAATTGTGAGAACTAGGA--GCTCATGTTACTACTAAAACCAAATAAAAATTCA- s mm3.chr5 23522865 427 + 149719773 TGCATGAAATATATAGTACTAACATTGTT--CTTTAGATATAAGGAGAAAA--------TGTATGTGAAGAAGGGCTGAGGAACCTAAATGTGGGAGAGACATGGGCAGTCACAC-----------GAATA---TAGTCA-------------------AGAACAACAGAATGAAGTAAAC----------TAACCTCTCAGTATATAATTATAAAATAAACTGT-TTTAAGAGTAAATATCTACATTTTA------TGCCTTTCCAATACACTGCCAGGATAATTTGCATAAATCAAGAACACAGATTTTT----AGGAACTAATTTATCGGAGT----AACACTTAGAAACAGTATTAAAAGTACTAAAATACTGCCACATATGCATAATAAGAACAAATACTTGATTTAAATATTGGCATATTATATATAATAGATAATTAGTCTTAAGAACTGAGAC-AACCATATTAGTGATAAAACAAAATAAAAACTCA- s rn2.chr4 179451332 436 - 183307734 TGTATTAAAAATA--GTACTTGCTTTGTT--TTTTAGATGTAAGGAGAAAA--------TGCTTGTGAGGAAGAGATGAGCAATCTAAATGTAGGCTAGACATGGACAGTCATACAA---ATGAATGAATA---CAGCCACTGACTGTTCTGTGGTCAAGGAAGAACAGAG-GAAGTAAAC-------GGACAACCTCTGAGTGAACAGTCATGGGATAAATTGT-TCTAAGAGTAAATATCTACATTTTAA-----TGCCTTTTCAATACAATGACAGGATACATTGCATAAATCAATTA--------TTC----AGGAAACAA----------------ACAGTTAAAAATAGTATTTAAAGTACTAAA-TACTGCTACATAAACATAATAGCAGCAAACGCTTGATTTAAATATTGTCATATTATATATAACAGATAATTAGTTTTAAGAACTGAGACAAACTGTATTACTGCTAAAACAAAATAAAAATTTAA a score=40346.000000 s hg15.chr13_random 184297 281 + 414659 ATACATATTTG-----------------------------------------------------------------------------------------------TTAACTCAATT----TAAGGATGTTTACCTTAATACTGACAAACTATGGATGGTAACACTGACCACACTGAGAACAGGCAAGTAATCCTCCTTCTGCTCCTTGGCCAAAACTGCCACAAACTACACACATATCCTG-AAGTTAAGAAAACAGAACA-TATTTTAAATGG-AGACTAAGCTAAAAACCTACAAATTTTACTTTAAAAATACCTTCTTAACTAATATAGCTCTATAGCTAAATATTGGATCACTTCTGTGTAGATGAGATAAAGCAGAA s mm3.chr5 23523739 327 + 149719773 ATGCATATACA------------------------------------------------AAGGCACACATGCACATAAG-TAAATAAATTCTTTATTAAAAATACTTTAACTCATTTAATCTAAGCACATTTACCTTAATACTGACACAGTATGGATGGTAACATTGACCACACTGTGAACAGGCAAGTAATCTTCCTTCTGCTCCTTGGCCGAAACTGCCACAAACTACACACATATCCTGAAAATTAATAACATGTAAAGCTATTTTAAATTGCAGATAGTGCTAAGATCACACAGAT-----TTTAAAAATATATTCTTAATTAGCATAGTATTATAGTCTA--ACTGGATGATATCTAGGCAGATGGTATAGATTAAAA s rn2.chr4 179451976 358 - 183307734 acacacacacacacacttgcgcgcgcgcacacacgtacagggacacacagggacactcaaagacacacatgcacaTAAACTGAATAAATT----ATTAAAAATACTTTG------------TTAACTCATTTACCTTAATACTGACACAATATGGATGGTAACACTGACCACACTGTGAACAGGCAAGTAATCTTCCTTCTTCTCCTTGGCCGAAACTGCCACAAACTACACACATATCCTGAAAATTAATAACATGTAAAGCTATTTTAAATTGCAGATAATGCTAAGATTACACAGAA-----TTTAAAAATATATTCTTAATTAACATAGTAATACAGCCTA--ATGGGATGATATCTAAGCAGATGG--GAGATGAAAA a score=3321.000000 s hg15.chr13_random 236356 198 + 414659 ttcattcagcaggcatgtgttgcacgcccggcactgtgttagggctggggagaccatagacaccaaaagcagccgccatccttggcttagggctccttatgatcca----------------gcagTGA-------------GCACTTTCCCCTGAGCCTGGTGTGGAGGAGAATTGGCTACACTGCAGGAGGAAGCCACCCCAGGCTC-ATTTGGGTCCTTTAAATA s mm3.chr5 2485075 213 - 149719773 TTCCTTCAACAGGTGTGCACTGCCCAATGGGCTTGATGCAGAGGCCAAGAAGGCAGAGGGTACCTAACACAGA-GCCTGTCTTGGCCCAGAG-GACTTATGCCTCACTCTTTCTCCATGTATGTGCTGAAAAGCTCCCCAAAGCCCCTTTCCCTGGGCATG-------------TTAGCTCCATGGCTGGAAGAAGCCACCCTAGGTCCAATTTGGGACCTTGGAATA a score=28023.000000 s hg15.chr13_random 236682 245 + 414659 GTGCATAAGTGGATAATCCAAGC-GAAGTTTCCCTCCTTCCGTTCTCTTTGCAGGTCTATGTATTCCTGTGCTTACCTTGTGCGTGCGTGATGCATGGATGTT-GCTGCTAGGGGACATTCATATGGACCTAAGTGTCAAGAACACTGGGAGCCAATAGATCCATTTGGACCCATTTT---GGGGACTAAATGCAGGTTTCATACCTCAA-GCCTCTACAAGAAGATAAGAAA-CCCC------CACAAAGAA-ACACT s mm3.chr5 2489568 242 - 149719773 GCACATAGGTTGAAACTCAGAGCTCAGGCCCCCTTCCCTGGATCCTCTCAGCAGGCCTGTG-GTTCTCGTGGCCACCTTGTGCAAACA-------------CTGGCAGCTGGGGAACACACACAGGAATGTAAGTACCAAGAATGGTGGGAGCTGTCAGATCCACTAGGGCCCATTCTAA-GGGGTCTAAATGCACAGGGCACATTCAAAGGCCTCTAGAAGAAGATCTGAGA-CCCCATAAAACACCAAGAG-ACTCT s rn2.chr12 6850927 258 + 46874691 GAGCATAGGTTGAAGCTCAGAGCTGAGGCCCTCTTCCCTGTATCCTCTCAGCCCGCCTGCG-GCTCTTGTAGCTGCCTTGTGCAGACACAGTCTGCAGATGCCGGCAGCTGGGTAACATTCGCAGGGGTCAAAGTGCCAAGAATGGCGGGAGTTGTCAGATCCACTAGGGCCCATTTGAATGGGGTCTAAATGCGCAGGGCACATTCAAAGGCCTCTAGAAGAAGATCCAAGACCCCCATAAAACACCAAGAACACCCT a score=20614.000000 s hg15.chr13_random 236973 315 + 414659 ---GCTTATTCTGAGGTGCAGGTGGTTATGGAGATGGGAGAGAAGCTGAACTGGGATGAATCTGGGGAAAACTCTGCAATGTAGAGAAGTTCACCAGCTGCGTAAATGTTTGTAAAAGTTTCCTCGTTTGAATTGAGTTAGAGGTACATTGTCTATCACTGGCAGTAGTAGTTGTCTAAAGTTGCCTAAGGTTCTGAAAATTGGGGCTGTTTCTGCCTTCCC--CAATAATCCAGGACCTCAGGGAGAACACAGCTACCTAGAGCATCGTGGGGAGGAAAACCCAGTGCTGGCTTCTGCAATTGGAGGATGAATAGAAAC s mm3.chr5 2490067 249 - 149719773 ---GCTTATGCTGGAATAGAGCTTGTT-GAAAGAAAGGAGA-AAACTGAACT--GAAGAAATTTGGGCC--TATTTCAGAATAAAGGAACTCACC-----------------------------CTTGTAATATGAGCAGGGGACCTATCATCTACTCATGGCAGGTGCATCACTCTA-----------------TAAAACCGGGTCTGTTTCTGCCTTCCTCACAATAACCCAGGACCA--------GTGTGGCTGCAGAGAA-ATGGGTGGAAAGTGAAGCCAGCGCCCACC-------ATGGAAGAAGAGTGGAGAC s rn2.chr12 6851222 256 + 46874691 CCTGCTTATTCTGGGATAGAGCTTGT--GAGAGAAAGGAGA-AAACTGAACT--GAAGAACTAGGGGCC-ATACTTCAGAATAAAGGAATCCACC-----------------------------CTTATGGTCTAAGCAGGGGACATAGCATCTGCCCCCAGCAGGTGTGTCCCTCTA-----------------TAAAATTGGGTCTGTTTCCGTCTTCCTCACAATAACCCAGGACCATGAGGGTGGCGTGGTTGCAGAG---ATGG--GGAAAGCGAAGCCAGCTCCCACC-------ATGGGAGAAGAGTGGGGAC a score=32992.000000 s hg15.chr13_random 237656 365 + 414659 CAGGACGGTGCCTCCCAGTGCCCCCATACCCACGAGGATGCAAGAGTTTGCAGAGCAGCTTCTCAGAGAGGCGCACGGACCCTGGAAGTACTAGCTCAGTTTCCAGCATAGGGTCTGCTGGGAAAGGAC-GATAACAACCT----------AGAAAAGAAGTTAGGGTCTCCTTCCAGCTGCTAGGTC--CATGGTCACCGCAAAATACAAAATGCTAGACTCTGATGTTATTT---GGAAGGAAGCGAGAAAAACACAAATGTCTAATTCTTTGTGCTGTCCTTTTTTTTCTCTTTGAGCACCTCTAAAAGCCTTCCGCCACATCAGAACCAACT----TTTTCGTTAAGTTAATGCCTGTACTAAGCGAGGGGTC--TGGGTTGG s mm3.chr5 2491115 331 - 149719773 cagCACTGGGCCTCCCACAGCCT-----------GCAATACAAAAGCTTGCAGCACACCCTCCCAAAGAG-----------------GTACCAGCTGAATCTCTCACA----GTCTTCTGAGAAGTGACAGGTTGCAACCTCTCTTCCCC-CAACAGAAAGTGACCTTTTCACTTGAGCTATT-GGACAT----GATAGAGCAAAATGGAAGACACAAGA--CTGATAGCATTTACAGAAAGCAGGAAAGGGGGACAGAGAGA---------ATATTCCATACTTCCTTTTCTC--TGAGTACCTTCAAAA-CCTTCAGCCACATCAAAAGCAATG----TTCTCATTGAGCTAATACCAGTGTTATCAGAGGGACCTGTGGGTTGG s rn2.chr12 6852742 341 + 46874691 CAGGACTGGGCCTCCCCTAGCCT-----------GAGATACAAAGGCTCGCAGCACATCCTCCCAAAGAG-----------------GTACAGGCTGAATGTCTGACA----GTCTTCTGAGAAGGGACAGATCGCAACCTTCCCTCCCCACGGCACAAAGTGACCTCTTCACTTCAGCTATCAGGACACCACAGTCAGAGCAAAATAGAAGACACCAGA--CTGATAGTATTTACAAGAAGCAGGAAAGGGGGACAGAGAGA---------ATGTTCCATACTCTCTCTTCTC--TGAGTACCTTCTAAA-CCTTCAGGCACATCAAAAACAATGCTCTTTCTCATTGAGCTAACACCTGTGTTGTCAGAGAAGCCtgtgggacaa a score=18759.000000 s hg15.chr13_random 238021 249 + 414659 GGGCTGCGCCAGATACCTGAGATCTATGGGTGTACCCTCAAGAAGCCCAAAGTCCAACGGGACAGATAAAATGGGAACATCATTATTA--CAATCCTGGGCAGAAAGTCATAAATAGAGTTATAAATGCTATATTGGTTAGAGGAAAGAAA-GATTATAG----Ataggatttcctgataaaatacaagacacccagctgaatttgaatttcagataaacaatgcataa-gttttagtataagtatgtcacaaacat s mm3.chr5 2492188 213 - 149719773 AGGCTACACAGGATAC-----------AGGTATGACCTCAAGAAGCCCAGAATCTAATAGGACAGATATAATAAGA----CATAATCAGGCAATAGCGGCCAGGATGTGATAGTCAAATGGCTAAA------ATAGTTCATAGGAAAGAG--GCTTGTAG--------------------AGAAACAGAACACCC-GTGGTATTTGAACTTCAGATGATTGTGGCATAATGGTCTAGTGTATAGATGTCACACATAT s rn2.chr12 6853781 215 + 46874691 -GGCTACACAGGATAC-----------AGGTGTGACCTCAAGAAGCCCAGAATCCAATAGGACAGACATAATAAGA----TATAATCAGGCAATAA-AGCCAGAATATGA----------------------ATAGTTCATAGGGAAGAGATGTTTGCAGGGAGGGAGGGGGTGCCG--GAGAAATAGAACATCA-ATGCTATTTGAACTCCAGATGACTGTCGCATAATCGTCTGGTGCATGGACGTCACGCATAC a score=46205.000000 s hg15.chr13_random 238270 451 + 414659 tgcttatactgaaaaaaattatacattgcgtagcact--gtttatctgaaattcaaattcagctgtgtgtcctgggtttttatgtggtaaggccgtccaccctaTTTATAGAAGGCTTCATGCTGTAAATAATATTTCATCCACCTTTTAAAGATAGGCAAGGCATGAGCAGATGGAGAGTCATGGGTGCCACGCACTTAGGGTGCTTCTCTGACCTGCTGCAGAGTC--------TCCCAGCTCACCAAGAAAACTCTGCAGGTTTATA--AGGGGTCAAGAAATTGTATTTTTCCTGCCTGTCTCTATGGCCTGTGCCAAGCTGGGAGGGCCGGTCAGTGCAGCAGGCGGGATGGGCCAGGTTATGCTAAGGGGCAACCA---------CGGTCAGCGGCTCAtcgtcctcactccaggccccaggttgatgagggtggggggacaggacggggaggccactatctagga s mm3.chr5 2492747 451 - 149719773 TATTTATACC-CAAAAAATTATAGATTGT-TCATACTCTGTTTATATGAGACTCAAATTAAACCAGATGTCCCGGGGTTTCACAGGCTAAGCCTGTTTACGTTATTTAT-GGAGGATTCGTGGTACAAATAATATTTCATCTA---GAAATAGCTAAATAAGGCACAGGCA---GGGGAGCTA-TGCTTCCAAGAATCCAGGATACTCCCTTGACCGGCCTCAGACACCTCTCTCTCTCCAGTATAAGGAAAACCTTCTGCAGATCCACA--GTGGCACAAGAAAATGTCTTCCTCCCCCTTAGTCCCACAACCTACAGGAGG--GGTGAGGCCCTGCAGTGCAGCT------CTGTGAATGATTA-GCTAACACCCACCTAAACAGTGCCCGGCCAGCAGGTCTTTATCTTAACTCTAAGATTCAGGCTGACTGGGCACAAGGAACAGGAAGAGGCAGGTGTTATCTAGAG s rn2.chr12 6854314 439 + 46874691 CATTTATACC--AAAAAATTATAGATTGT-TCATACT--GTTTATAGGAGGCTCAAATTAAACCAGATGTCCCAGGGTTTCGTGGGCTAAGCTTGTTTACGCTATTTAT-GGAGGATTTGAGGCACAAATAATATTTCCTCTA---GAAATAGCTAGAAAAGGCAGAGGCA---GGGGAGATA-GGCTTCCAAGAATCTGGGATACTCCCCTGACCTGCCTCAGACAC----TTTACACCAGCACAAGGAAAACCTTCTGCAGATCTACAAGATGGCATGAGAAAATGTCTTCCTCCCCCTTAGTCCCACAGCCTACAGGAGG--GGTGAGGCCGGCTGGTGCAGCC------ATATGAAGATTTA-GCTAACACCCACCTAAACAGTGCCCAGCCAGGAGGCCCTTATCTTGGCTCCAAGATTCAGGCTGATGG-------GGAACAGAAAGACACGGGTGTTCTCTAAGG a score=24538.000000 s hg15.chr13_random 238721 303 + 414659 ----------cattgccagttaccatggcaaagggaaagaatgttgcaaagcaaagcacaggcttttcaaatgctcactcaaaagcagcacagtcatttccactcaaaaaatgcc-------tgcgttcaagaagacaagaaaatgcaatcctatcacatgcctagggggagaaaaacacgcagatctttgtagacagccctaaagatcaccacaGTCAGCTCTGAGTTTCAGTTGTACCAACAGCCTGGCTTCTAACTGCCAAGGATTCCCCAGTGCCAGGA-GCTCCCCAGTGCCTGGGGCTCCTCAATGCCAGGAGCC------------------------------ s mm3.chr5 2493396 314 - 149719773 tCCTCCAGAGAGTTGCCAGTTACCATGGCAAAGGAAAAGGATATGGATAGGCAAGGCACTGGTGGTTAACGTG--CACACACAGAGGGAACAGTCACCTTCCTTCCTCACAGGCCGCCTGGCTATGACCAACTAAACAATAAGATTGTGAACCACTGCAGGCCTGGGATCATGGGAGCACACA-----------------CT---------CTAACACATCTCTCATGTTTGGTTGTACCAACAATCCAGCTTTAGACTGTCAGGGATTCCCCAGGGCCAGGGACCTCCCCAATGCTAGGGGCTCCTCAATGCCAGGAA---------GTTAGGGACCCTCAATGGTAGCC s rn2.chr12 6854951 311 + 46874691 tCCTCCGAAGAGTTGCCGGTTACCATGGCAAAGCGGAAGGATGCAGATAAGCAAGGCACAGGTTTCTCAAGTT------CACAGACGGAACAGATACTTTCCTACCTCACAGGCC--------ATGTTCAACTAGACGATAAAACTGAGACCCACTGCCGGCGAGGCCTCATGGAAACACACT-----------------CTGAAG-TCACCCAAGGCGTCGCTCAGGTTCAGTTA----AACAA--CGACTTTAGACTGT-GGGGATCCCCCAGGTCCAGAG-CCTCCCCAATGCTAGGGGCCCCTCAATGCCAGGGAGTCTCCAATGTTAGGGACCCTCAGTAGCAGAC a score=67880.000000 s hg15.chr13_random 239547 661 + 414659 ACCCCTAGTAAGGAGTGGCCTGCA-CCTCAGGGGTTGCCAGTGCCAGGTGATGGGCAACAGGGTGCTCTGGGAAGGAAGGAAAAAAGGAGCTGCCACAGGGTTTTCTCCAATGGCCCAGGGGAAACCCACAGATTCGCCTTTGTG-TCTGGAGCCGTTGACCCCAGAACTCACAATGCTCAGTGTTCAGGTCTGCAGGGGCCAAGGTGGTGATGGTCCCCTCGAGC-----CAGAGCACCAGGGAGCAGCCCCAAGGCTGGCCCAGAGGGTCTCCATTTGGCACCAAAA----AGCAGCTG-CATTTAAAAATCAACAGGCAAAGGAAATGAAAAACACCCGCCCAGGGCCACCTAGGGGCACCCAGACC-CTTGCAGGTTTACGAGGCC-TTTCTGGAAAAGGCATGACTAATGTTGTTATTG-------CCTGGCTGCGCGCCAGCAG-TGCTGTCACCGCCTTG-CTGAGCCGCAGTCAGGTGTGGGCCAGAGACAAAGGGGCC-TCTGTGTGCTGCGGGGACAGGGACGCCGCGG------GGGCCGGACAATGGTGTCG-GGGAGCCTGGAGAGGTAGCCAGGGCAGGAGGAGGCTGGGGGCCGG---TGGATGAAAGGGAGAACCTGGAG---------CTGCCAAGGCTCACTCGCACCT-GAAAAGAGGAGGCGCAGAACCATCTGCTGCGGAGCCA s mm3.chr5 2494356 627 - 149719773 ACCGGTAGCAAAGAATAGCCTGAATCCTAAAGACCTCCCAGAGCCCA----CGGTTGACACAGGCCTCT----AGGACAGAACACAAAAGCTGCC-CAGGGACTCC-------GACTGGTGAGAGCCC------TTGGCTTCCTG-GGGGGACCCCTCTGACCCACAGCTCCCA---C-CGGTG---GAGGCT-----------GGCATT--TAGTCCTGTTGGGCTAGTATAGACTACTTGG-------CCCAGGACTGACCCGGAGGGTCCC----TGGAACCAAAA----GGCAGCTGTTGTTTAAAAATCAACACGGAGAGGAAATGAAAAACACCCGCCCA-GGCCTCCCAGGG-CCAAGAGACTGATGGCTGCTGGATGAGGCGGTTTCTGGAAGAGGCATGACTAATGGCCCTACTGAAAGTGCCCTGGCCAAGTGCCAGCAGCTCCCGTCAACGCCTTGTCTCTGCAGCAGTCAGGTGTGGCTGGGAGACAAAGGGGCCGTCTGTGTGCTGGCGGGTCTTGGACCCAGTGGCTTTTTGAGTCAGGCAATGGTGTCACAGGAGCCCCTGGAGG-----------------GGCTGGGGGCGGGGTTTGGATAGAAAGAGG-GCCTGGAGGGGTACTGCCTGCCAAGGTTCGCTCACACCTCGCCACCAGGAGAGGCAAAGCCATCTGCCATCTAGCCA s rn2.chr12 6855537 612 + 46874691 ACCAGTAGCAAAGAATGACCTGGATCCTAAAGACCTCTCAGTGCCCA--------------------------GGGACAACACACAAGAGCTGCC-CAGAGACTCT-------GTCTGGTGTTGGCAT------TTGTCTTCCTGTGGGGGAACCCTCTGGCCAACAGCTCACA---CACGGTG---ACGTCTT----------GGCATT--TAGTCCTGCTGAGCTAGTACAGACTCCCTGG-------CCCAGGACTGACCCAGAGGGTCCC----TGGAACCACAAAGCAGGCAGCTGTTGTTTAAAAATCAACATGGAGAGGAAATGAAAAACACCCGCCTA-GGCTTCCCGGGGGCCACGAGACCGATTGTCGCTGGATGGGGCAGTTTCTGAAAGAGGCATGACTAATGGCCCTGCTGAATGAGGTCTGGCCAAGTGCCAGCAG-TGCTGTCATCACCTCCTCTCTTCAGCAGTCAGGTGTGGGTGGGAGACAAAGGGGCCGTCTGTGTGCTGTCGGGACCGGGACACAGTGGCTTTATGAGTCAGGCAATGGTGTCCCAGGAGCCCTCGGAGG-----------------GGCTGGGAGTGG----TGGACAGAAAGAAG-GCCTGGAGGGGTACCTCCTGCCAAGGTTCACTCACACCTTGCCATCAGGAGAGGCAGTGCCATCTGTGACCTAGCCA a score=38573.000000 s hg15.chr13_random 240794 601 + 414659 CCAGAGTAGGGCTGGGACCAGGTGAGCTGAGTCTCACCAGCTCTGGCAAAAAAACAAAACAAAAAAAGGaaaggagcaccagagaactcagtgatcaccataactgatattttaatgcaaatcaaaattaatgc-aaaatatccctgatgaataaaatatcaaaattgtaaataagacaggaccCAGCCCCATACTTGGGCTCCCTGAGGGTGAATCCTCCCTCACCTCACCCCAGATGGGCCCTGCCCTCAAGGGCAGCTCACTCCTAAGCAGTCCATGGGTGCCCACT---ATGCACAGCCTCCATATCATCTTCGTTCCAACAG----------ATAGGGATCCC-GTGACCCTGCCACCCATGCCAGTTGGATTACAGGAAGCCCTGATGCAGGTTCACGTATGTCCCCCACCCCAGCGTGGCCCACACTGAACAAAACTGTAAAGGTCTTTGGTGTCCCTGTTTCCCTTCTCAGTGCTAATGTTTGCCTCC-ATCCCTG-----GCAACAGTTTTGCTCATAACTGACTCTCAGCGAA----------GGTTTCAGGTAGTGGTTC-----------------------------------------------ACTGGCACTCAGG--------------------------------------------------CCTGGCTGTAGGTGAGAATCTAAACATGTAGcaggct-gggtcccactg s mm3.chr5 2495413 523 - 149719773 CTAGACTAGTCCAGGATCCCGGTGAGCCAGCTCTCCCC---------------ACAAAACTTAAA---------------AGAAAACCCAATAAT---GAGAAAGAACGTTTTTATGCAAGTCAAAAGTAATGCAAAAAAACCCACAATCAGAGAAGACTAGAAA--------AAGAAAGGGCCCAGCCTTGTATTTACACAATCGGAGAGTACGCCCTCCCTCACCTCATTTCCAGTGGG----------GAAGGTA-------CCATAGCTCTAGATTCATCTCCACTGCCATTCACCATCACCAAAACATTGTCACTGCCACGGGGGATGGGGAGAGACAGTCCCTGTGTCCCT----CCCCAGACACTTGAGTTATAGCAAGATCTGTCCC-----CATGTACCTTGTCCACCCCACCAAGGTCCCCTCTGGGTGACAC-----------------------CTCTCTTTCTCTGTGCTACTGTCTGCCGGG-ACCTCTGTACATGAAGAAA-------CATAGTTGACCTTCAACAGA-------------TTCAAGTAACTATTTTT---------------------------------------------ACAGACTCTCGGC--------------------------------------------------CCTGGC-GTGCACAAGAACCTGACCAGGTATCAGTCTAGAGTCCCTTTG s rn2.chr12 6856565 620 + 46874691 CTACACTCTTCCAGGATCCCGGTGAGCCTGCTCTCCCT---------------GCAAAACTTAAA---------------CGAAAACCCAATGAT---GAAAAAGAACGTTTTTATGCAAGTCAAAACTAATGC-AAAAAACCCACAACCAGAAAAGACTAGGAA--------AGAACGGAGCCTGGCCTCATATTAACACAGTCAGAGAATATGTCCTTCCTCACCTCTTTTCCAGAGGG----------GAAGGTA-------CCATAACTCTCGACTCATCTCCACTGCCATACACGGTCACCAAAACATCTTCACTGCCATGG----------ACGGCAATCCCAGTGTCCCT-----CTCAGACACTTGAGTTATAGCAAGATCTGCCCC-----CATGTACCTTGTCCACCCCAACAAGGTGCGCTTTGGGTGAAAC-----------------------CTGTCTTTCTCTGTGCTACTGTCTGCCGGGTATCTCTGTATATGAAGAAA-------CGTGGTTGTCTTTCAACAGATACTTTCAATAGTTACAAGTAACTAttttttttttccggagctggggaccgaacccagggccttgcgctttctaggcaagcgctctgccagagctaaatccccaaccccACAAGTAACTATTTTAACTTGCTCACCACCCTGGCTGTGCACAAGAATCTGACTAGGTATCAGTAT-GTGTCCCTTTG a score=13746.000000 s hg15.chr13_random 243096 187 + 414659 gcccagcacgaggatcttccaataaatgcatttttcttgggtcacccaactgtcctggccaagactttctcagaacatgttgcagcccgaggctcctccggtctaatctttccttcctgctctccct------tctcaggtgtcagagctgcctctcagtctgaagtctctcccaacctgatcctgctctccc s mm3.chr14 111296269 163 + 115844145 GCTTAACAGGAGGATCTGCCAATg--------------agatctcctcagcagtctagtcaaaatatttcctaaacaaatt------------tcttgggtcctcgtacttgattcctcttctccctgtccagtcacaggagccag-gctgcaggtcagtctggagcctctcccttcc---ctttgcccttta s rn2.chr15 94943639 173 + 99209255 GCCTCACAGGAGGCTCTCCCAACG--------------GGGCCTCCCCAACAGGCTAGTCAAAATATTTCCAAAACAAACTTCTCTGCGA---TCTTGGGTCCTGGTACTTGAGTGCTCTTCTCCCTGTCCAGGCACAGGAGCCAGAGCTGCAGTTCGCTCTGAAGGCTGCCGCCTCC---CTTTACCCCTTA a score=33571.000000 s hg15.chr13_random 243283 390 + 414659 ttttaatcattcacaggcatttgctctagtaaatctcttgtttttctcatgtcacttggcattgactgctcagagaacT--------CACAgtgggtaccaggagtggtgtgaggaaagt-ggtgataagat-gatattggagactggctcacttgctgcccagctggcaag---------------tcagactccttctgggatggaaagtggggac---tggataatcccagactcagagtgacagcccaagtgctgaagatttcaTAGTCTGCAACCTGTGAAAATGTCTAGG---CCAAGGG---GGACAACCT-TGCCAGT----------------GCTGGACATTGGCATGTACAAGGGAATAATGCCTGCAAGG-ACAGGGGAGTTGACTAATGGTTACTAATTTGTTCTGACACCCTACAGACAGGTGATGAG s mm3.chr14 111296432 410 + 115844145 ttaccatcactc-tgactgactactct-gtca--ctcctg-------------actttgggtcttctt---agaggatctgaaccaacacaGTGGTTT-AAAGAGTTTTCTGAGAAAAAATGGTCCTAACATGGAGTTTAGAACCTGGCTCATTCACTACCTGACTAACAAGGACCCCTCCCCAACCCCAGATCCTTCTCAGGGTGGCGCCTGAGTTT----GGGTAATTGTTGGCTGAG-GCAATGGCCAGAGCACTGCGGAGCTCATGGGTGGTGACC-----AAATGTTCCGGGAACCAGGAATGTGAATACCCTGTGCTTGTATAATGATTCCAAATAATCAGGCATTGACAAGC-TAAGAGAACAATGCCCACCCCTCACTGTGGAGTTGGCCAGTGAATGCTAATTTGTACTGACACACTGCAGAGGGATGCTGAG s rn2.chr15 94944136 412 + 99209255 TTAGCATCACC----GCTAACTACTCTTGTCA--CTCTGG-------------ATTTTGAATCTTCTTCTTAGAGGATCTGAACCAACACAGTGGTTG-AAAGAGTCTTCTGAGGAAAGA-GGTACTACGAAGGAGTTTGGAGCCTGGCTCATTCACTACCTGA-TAACAAGGACTCCTCCCCCACCCCAGATCCTTCTCAGGATGGAGCCTGAGTACATACGGGTACTTGCTGGCTGTG-GCAGTGCCCAGAGCACTGCCGAGTTCATGGGTGGTGACC-----AAATGTTCCAGGAACCAGTGATGTGGATACCCTGTGCTTGTATAATGATTTCAAATAATCAGGCATTTACAAGC-TAAGAGGACAATGCCCGCCCCG-ACTAAGGAGCTGTCTTGTGAATGCTAATTTGCACTGACACACTGCAGAGGGATGCTGAG a score=7159.000000 s hg15.chr13_random 249405 57 + 414659 CTCTTTGTTTCTTTCTACCTTTC-CTCCATATTCCTTTTTGAATTAATTTCTCTCCAT s mm3.chr5 2496947 58 - 149719773 ctctctctctctctctctctctctctctctctctctctctctctctctctctctctct s rn2.chr12 6858286 58 + 46874691 ctctctctctctctctctctctctctctctctctctctctctctctctgtgtctctct a score=1305.000000 s hg15.chr13_random 249462 97 + 414659 CGTTTCTCGTTTGTGTCTCA--CCTCTTTTCTCTCTTTTCCTGAGGTTCATTCCTCCTTAAAAA---------GACACAGGACTTCAGCTCAAGTGCCTGCC-ACAATG s mm3.chr5 2497005 103 - 149719773 GACTTCTTAGTCCCATCTCAGTCCACATTGCTTTTTTTTT------TTTAATCTACCTGAAAACCCTGTACCTGGTACAGGGTTTCAGATGAGGTGCTGGCCCACGATG a score=21467.000000 s hg15.chr13_random 249559 191 + 414659 TTTGTAAAATCCTGTTCCCCAAAGTGACA---CTAATGGTCTGTGGAACTTCTCTGGCCCTAATTACTTGGCAGTAGACATCTCAGTGGGCTGCTTCTCCCTGCAATCAGTTCCTTAGGTAATTACCACGAGCCAGAG---CTGAAGCCGTGTGCTGAGGAAAGGGTGGCGTTGGGTTAGGCTGAAATGCCTACTCC s mm3.chr5 2497108 188 - 149719773 TTTGTAAACTCCCACTTCCAAAAGCAACAACACTAATGGTGCA----GCCTCTTAAGCCCTGATTGCTTAGCAGTTGAAATCTCTATAGGCTGCTTCTCCC-ACA-CCAGTTCAAGGGATAACAACCACAGGAGAGAGTGGCTGGAGCCATGTTCTCACAAAAGAGTGCTGTTGTCTTAGGATGGCATGCCTAC--- s rn2.chr12 6858968 181 + 46874691 TTTGTAAAAACTCACTTCCCGGAGCAACA---CTAATGGTCCATGGAACCTCTCAAGCCCTCATTACTTAGCAGTAGAAACCTATA-------CTTCTCTC-ACAATCAGTTCATGGGATAAAAACCACAGAAGCAAGTGACCGAAGCCATGTTCCCAC--AGGAGTGCCGTTGCCTCAGGACGGCATGCCTGC--- a score=2719.000000 s hg15.chr13_random 249750 318 + 414659 TGACTTTAACGTGTGCACAGAAAGACAAGC---------------CAAT-GCTAGCAAGTAAAATATGGAGCAGGAAGGACAGACTGACCCACCACATTACAAAAATCCAAATCACTGCTAATAGAAAAGAAGTCTCTTCTGCAAAGTTAATAATATTATTTCTTTAGACAAATCGCCAAGTCTTGGG---TGGTTTCAAATCAACTTGCTTAGTGTGAGGTCTTCACATCTTGACTCTAGAATTCTGTCATGAAATGGGAAAACATCAAAGGACACCAAGG----GCCAATGGGTAAGGTTTGCCTGTCCGGTTCATGCTGCCAAAGAGCTAAACTTTCA s mm3.chr5 2497296 200 - 149719773 TGGTTCTAGAACTCTTCCATGAAGAGAGAC---------------CAAGAGCTCACAGACAAGGCATGG----------------------------------------------CTTTGAGTGG-----------TTCTCACAGAGTTAAGC-----TTTCCTTGCGACAGGCATTCAAACCTCAGGGCATGGTCATAGCTA-ACATCTGTAGTACCAATACTCAGCA-----------------------GAAGTAGA--ggcagaggcgggggatgggg----gcag--gggcaggggc-----------------------aggggca--------- s rn2.chr12 6859347 220 + 46874691 TGGTTCTAGAACCCTTCCAGGAAGAGAGACAATATCAGAAGAGACCAGGAGCTCACAGACAAGGCATGG----------------------------------------------CTTTGAACAG-----------TTCTCACAGAGTCAAGA-----TTTTCTTAAGACAAGTATCCAAACCTTGGTGCATGgtggtagctc-acatctgtaatatcaatactcaaca-----------------------gaggtaga-aggcaggagCGAggggcggggcagggcca--gggtggggct-----------------------gggggct--------- a score=17657.000000 s hg15.chr13_random 250068 263 + 414659 ACATA-AAATACATTCAAAATTAAAACAAGCCACAATGCCCCGTTTGTAGAGGCCTCCGTCAGTCTG------------------------------------------------------AATATGTGGTGAGGAAGGCTCTG----------GAAGGGAAGAAAAACAGTTCTCATTGTGGTTCTGTCTCCTACATTGGACTACTTTGAACTA---CAATCTTGCAACACCCAATTACTGGCACT----GGACTATCATCCTATGT-TTTCTGAGCTATGGTTGTTATTGAAATGATCTCTGACCTGTTTTTCATAGTTTCCAGGAGTTGAAAG s mm3.chr5 2497561 246 - 149719773 aCATGTACATGTGTACTCA--------------------------TGTACGAATCTACACTAATCTA-----------------------------------------------CACT-----------AAGAGGAAGACCCTGGGTAGTGCAAGGAAGCGAGAAAAACCACCCTCCTCCTGCCT-TGTCTCACAAACAGGGCTACTTGAAACTA---TGATATTACAAAACCCTATCACAGGTGGGCTGAGGTTTGTTATCCTAAATCTCTCTGGGATGTGGTTGTTACCAGAGTGGTCTGTGTCCTATCTGTCACTGTCTA--GGACCTGGAAT s rn2.chr12 6859640 296 + 46874691 ATATACAAGTGTGTCCCCA--------------------------TGTAGGCATCTACATTTATCTATCAGAAATTTACATTAGCAATAATGCCCAGTTTGGAGAGGCTTTTATCACTGTGAAAATGTGAAGAGGAAGGCTCTGGGCCATGGAAGGAGGGGAGGAAAATCACCCTCCTCCTGCCT-TGTCTCACAAACTGGGCTACTTGAAACTACTATGATGTTACAAAACCCGGCCGCAGGTGGTCTGAGGTTTGTTATCCTAAATCTCTCTGGGCTGTGGTTGTTACCAGGGTGGTCTGTGTCCTATCTGTCACCATCTG------------- a score=165153.000000 s hg15.chr13_random 250650 1400 + 414659 AGCAATTCCATTTTCAAAAGCTTTTAATTTAC-CCTCCTTTACAAGTTCACACTTAGTGCATCAATCAAGGA----CATTTTtgctctgttcctagcacctaggacagacagtgcccagcacagaggaggacccccatacctacggattcaatgttggtcgaatggaata---gaatGGAGCATGTTATGAGGTGATTTGTTTTCAGGCCATGATTTT-CTGACTAAATGTTCCAATACTCATTCCAGCAACAAattcattaattcaacaaatattcatggagagccaatttcatgccagcctgggcctctggggccacaatggtgagccaggcaggcaaccagccttgttaaagacactgagagagaaccatggtctccacccttgagctgcttataatagggtgagggaacagaacagatcggaagcaattagaaaacaattaagtgttaaattatacgcctctgactagcccaggggagtctgggagggagaaaaagctcatgtagtcattgctgttttcatggaagaggtgatctttggctgagccttgaaggattccctggatttgggatgcagagcagagtgggtagagtagaatgttcctacagggaagcagcTACCCGGAACCACTCAAGGAAAACTGAAGTCTTA-----AAGGCCCAGTTACACCCTGGACCTGAATTGCCCCCAAAGAAAGAACTTGAAATCCTCTGGTGACTTAAAGGAGTTTGAATTG-GACTTGGAG---ATATTTAGTTTCTT-CAC-AAGTCTAACTTTCCTTCCTCTAACATGCTAGAACATGAAC--TTGCAATGATTTCCTTCAGGCCATTGTCTTGGGAGAGAGGTTG---------------TCAGTCCA--GAGG---GACtgcatcggaatctcctggggaccttttctccttggctccaaccacc---agagtctctgattcagtagatat--gataggat-atccaggaatct--gtatatttttaaagctcccca---------agtgattttattaatcatcttggtttgggagctactctcttagaTTTATTTCAAAGACATTCCCTCTCCGAAATCAGAAT-AAAAGGTATAGGCATATAGTAACTAAAAAAGTAGGTACGACTTATGTCCATAAATCCCTCTAACAGACAATCTGGAGAATTTATAGGGGAAATAAATCAACCTGACACACTCTACTTCCTTGACCTTCTAAATGAGTCAAAATGATCAAAATTTGGCCAAA---ATGAATTAAAATTTACCATTATGGAATGGGCACAGCCTGATGAAAGAAAATGAAGGGAGAGATTTTCTCTTTATTTAAAATATTAAAAAGCTGAAGCTGTTAGTG------AGTTGGAGTTAACTAATGTACTCCCTTTCCTTATTAAGCTCAAT--------TTGTGTCTCTAATTC----AAGGCAAAAAAATGTCCATTTGTATATAAGATGT s mm3.chr5 2497807 1384 - 149719773 ACCAACTCCACTCTCAAAATTTTTTGATTTTT-CCTTCTTTGGAAATTTACATGTATTATGTCAATAATGAACCttcttcattgctatgctcccaatttcccaga---atagggcct-gcccaaaggaggcgctcaGGCTCTGACTATTAAGTGTTGGTCATATGGAACAATTGAAGGGAGC--------TGGTCATTTG-TTTCTGGATGTGATTTT-CTGATCAAACGCTCCAACGCTTGCTCTGTCAACAAattcattaattcaactaatattcgtggagagccgatttcatgccaggctgggcctctggggccacaatggtgagccaggcaggcaACTAGCCTTATTAAAGACACTGTGAGGAAGCCATGGTCTCCACCCTTGAGCTGTTTATAATAGGGTGAGGGAACAGAACAGATCGGAAGCAATTAGAAAACAATTAAGTGTTAAATTATACGCCTCTGACTAGCCCAGGGGATTCTCAAGAGGAGAAGCAGCTAAT---GTCACCGAAGTTTTCATGGAGGAAATG----TTGGTTGTG------AGGATGCCCTGGATTGGATGAGTAGAGCAAAGTGGG-AGAATAGAACGTTCCTGGAGGGGAGCAGCTGCCCAGAACCACTCAAGGAAAACCAAAACTATA-----GATG-CTGGTCACACTCCGGGTCAGGAAGGCTCAGGAGGAAAGTATGAGAGATACCCTACTGACGTCGAAGAGCTCGAGTTACGCCCTGGAGATTATATTTAATTGCTTCCACAAAGACGAAGCTTCTCTCTTCCAA--------AACATGAACCTTTGTGACTATTTCCTTTAAATCATGGTCTTAGGAGGGAAGCTGTGGGGTTCTTCCAATTTTGTCCACAGTGGCGAGAAGACCTCAGGGTCACCTGGGACCATTTTC----CTGCCTGTGCTGCTGTAGTAGTATTGGGTTCAGTAGCTGTGGGATGGAGTGGTCCAGGCACTATTGTGTGCATCTAGAGCTCGCCAGTGATGCTGGGTGATGTTGTCCATTC----TGCTTTAAAGCTACTCTC-------CATCATA-------TTCCTCTGTGTAG--AGAAGGAAGAGACGAAGGT------------AGAATGTAGGTCTG--TCATCTCAACAAAT-----------GCAACCTGGAAAATTCATAGCAGAAAGAAATCAGTCTAACAAGCTGTGTTCCTGTGACCTCCTTAATGCATT-ATACAGTCAAGATCGGACTTAGGACAAGAATTAGGATCCGCCTTCACAACATAAGCAAGGCGTGGTGGATGAAACGGAGAGGAGGGGTTTGC-CGGTCTTTCACACAGCAGAGAGATGAAGCTGGCAGTGACCTG-AGCTAAATTTGACAAACGTGCTCTTTTTCCATCCTTCACTGAGTGGGTCACACTGTGTCTCCAATTCTAGAAAGGAAA--AAGTGTCTAATACCATGTAAAATGT s rn2.chr12 6859936 1327 + 46874691 -CCAACTCCACTCTCACAAACTTTTGATTTTTTCCTTCTTTGGAAACTTACATTTATAATGTCAATAAAGAA---GCTTCATTGTCATGGTCCCAATTTCCCAGA---GTCGTGCCC-ACCCAAAGGAGGTTCTCAGGCTCTGACTCTTAAGTGT-GCTCAGATGGGACAACTGAAGGGAGC--------TGGTCATTTG-TTTCTGGATGTGATTTTTCTGATCAAATGCCCCAGTGTTTGCTCTGTCAACAAattcattaattcaactaatattcgtggagagccgatttcatgccaggctgggcctctagggccacaatggtgagccaggcaggcaACTAGCCTTATTAAAGACACTGTGAGGGAGCCGTGGTCTCCACCCTTGAGCTGCTTATAATAGGGTGAGGGAACAGAACAGATCGGAAGCAATTAGAAAACAATTAAGTGTTAAATTATACGCCTTTGACTAGCCCAAGGGATTCTCAGGAGGAACAGCAGCTAAT---GTCACTGAAGTTTTCATGGAAGAAATG----TTGGTTGGG------AGGATGGTCTGGATTGGAGGGGCAGAGAAAAGAGGA-GG----GAAC------AGAGGGGAGCAACTGCCCAG--------------AACCAAAACTGTCAATGTGATG-CTGGTCCCATGCTGAATC-------------AGGAAAGTATGAGAGATACCCCACTGACATCAGAAAGCTGGAGTTA-GCCCTGGAGATTATATCTAATCGCTTCCACAAAGATGAAGCTTCTCTCATCTAA--------AACATGAACCTTTGGGACTGTTTCCTTTAAATCGTGGTCTTGGGAAAGAAGCTATGGGGTTCTTCCAATTCTATCCACTGTGG---GAAGGCCCTGGTGTCTCC-----------TC----CAGCCCCTGCTGCT---GGAGGCTTGGATTCAGTGGCTGTGGGATGGAGTGGTCCAGGTACTG--GCATACCTCCAGCGCTCACCACTGATGCTGGGTGATGCTGTCCATCCCACTTGCCTTAAAGCTATTTTC-------CACCACA-------TCCTGAGGTGTAG--AGAATGAAAAGACAGAGGT------------AAAATGTAGATCTG--TGATCTCAAGGA---------------AGCCTGGAGAATTCGTAGCAGAAAGAGATCGGTCTACCAAGCTGTGTTCATACAACCTCCTTAGCACCTT-ATATAGTCAAGATCAGACTGA----ACGAATTAGGACCTGCTGTCACAACATAAGCATGGCGTGATGAATGGAAAGGAGAGGAGGGGTTTGC-CTGCCTTTCACACAGTAGAGAGATGAAGCTGGTAGTGACTTGAAGCTAAATTTGACAAGCATGCTCTTTTCTCATCCTGTGCTGAATGGGTCACTTTGTGTCTCCAATTTCAGAAAGAAAAATAAATGTCTAAAGCTA-GTAAAATGT a score=14180.000000 s hg15.chr13_random 252394 145 + 414659 ATATTTATTTCTTTAGTTACGTGAACTGCTTAGAGAATAATGCTCCGTCCGTCAGGATTAAGAGGGTTGAGAGGACGATTATGGATCTGTGTGTGCCATGTTCTATCTCTCAGTCCTCTCCAGACTTTAATAGGCAGTGCTTCTT s mm3.chr5 2499191 138 - 149719773 ATTGTATGCTCTTTGGGCACACGCATTGCTTGAGGAAGAATGCCATCCCAATCACCAGGAAGAGG---GAGAGAGAAGCTGT-GATGGGCATGTGCCAGGCTGTGTCCCTCAGTTCTCCCTG---CTTAGCAGGGGATGTTCATT s rn2.chr12 6861263 138 + 46874691 TCTGTACGCTCTTTGGTCACATGCACTGCTTGAGGGAGAAGGCCATCCCAGTCACCAGAAAGAGG---TAGAGAGAAGCTGA-GACACGTGCGTGCCAGGCTGTGTCCCTTGGTTCTCCCTG---CTTAGCAGGGAGCATTCCTT a score=141606.000000 s hg15.chr13_random 253185 1665 + 414659 TAAACAGAAGATGCATTACAAGCACATTCACCAAAAAGCTCGGTCATAAATACTCCACATCATTATTGCTATGATGTCACTGCACTTTCAGCATCCAATTTGATGAGAGCTGTAGGATTCAAGATTTACTTCCGTGAAAACTGATAAGTGTAAAACGTAAGGCCAAAGCACCAGGGCCAATTATATCTACAGTCTTGTTACATTTGTCATAATCCTACAGCAAAAGAAACACCAAACTAATCATTAACTTGACAAGCTATTCACTCCAGACC-TGCCTTCCTATTACATGTGCCTTAGAAGATTTGGAGCATTCTTTTCTGTTAGAATTCTTTGTGGTATCAAATAAATACTCCTTTTT---TCTTCAAAGCTGACTATTTTGGATTATTCTGATGAGTTGGGAGAGACATCAAAGGTCCTTTCTGTAGGTGAGTCAGTTGGttcattcacttactga-----------gtacgtat-----tatgcag-gcatgtcatgccaggcac--catggatgtgactgggagtacaacagtggcaaaaccagacacagcccctggtcacatgaaggcccagtctagtcaggg----agacgcaa--gaagtctgagtaatgacaccaacaaataaataatCCCAAGCGGGGCTGAGATTTAGCATGGAAGAAGTGGCTCTTCAAGAGCAGGTGGCCAGACACCCAGCCTAGGCTGAGGGTCAGGGCAGCTGTGACCAAAAGAGGGAGATGCCTGAGACAGGAAGGAGGAGTGAGGCAGGGATGGCACAGGGAGCGGCAGGTGCCAGAAGCTGGTGGGTGGGGACATAGTACTTGGACATGCTATgcaaaggggacaagggcacctgagcacgaggagccaggataggtacagacagggg-cccgatgtggtggagccttgggagcacccttaggaatgca-gtctttatcttaaaggagactgggac----ccataggttttaacaaggtgagacgcaatcagatttacat-atagaaaagtgtttgggt----------gagtagattgaatagaggaggaccaaatatgaagctggcttaggcatgcaaggctggggtctgaggccaggaaacagagtgtaggaacagctggaaataaggggtggaagtga-------------------------------------------------------------gaattacagag---------gaggtgaaagaaacaggcacttgagagaggagagatttctgaggagaggatttctgagggggcgggtgcgtcaatgaggactccaacacgtccgacttgcataacttagtgagtgccgtgccattcaccaggagtgggccaggctggaggggtggttgtggtgaaatatctgagtggtgaggctgagcagacctttggagat-atgcagaggagagatgtgggctggagacatgaacttggaattcatcaccatctagatggtcgtcaatgtcctgggcatgaatga-tgagccaagggagagaACAGAATGAATCTCGGGTTCCTGGAAAATGACTCTGGAATGTGGGGCTGATATGAGTCATGGAACTTCACATCAAGCTCCTGCATTTCAGGTCCAAACCCATTCACTG--CTGTGCAACCCGTCTATGACCGTAACAGCTAAAAATAAAAAGGCTTTGCTCTACACATGAGAAACCTTAGGAAAAAGGCTTCAGTAGGACAGACCATCAAATAACACAGGATTCTGGTGTTTAGAAAGTCATTTATCACAg s mm3.chr5 2499339 1530 - 149719773 TAAAGGAGAGATG-GTCACAGAAGCAGGCTCCAAAAAGCTCAATCTTGAAGAATCTGCCTCAGTACTGCCATGATGTCATTGTCACTTCAGAACACGTTTTGATGGCAGCTGTAGGAGTCCAGATTTA-GTCGGAGAAAACTAGCGGGTGTTTAGGGTGAGACAGGAACGCTATAACTGATTATACTTAGAGTCCTGTTCCATCAGTCATGATCCTGCAGGAAAAGACACAGAGAGCTGTGTGCCAATCTGACCAGCCATTCATCCTGGACCACGTCTCCCTTCCCTGCGTGCCTTGGAAGATTTGGGATGCTC-------TCAAGATGCTCCGTGGTGTC----AAACACTCTCTTTTTGGTCCCCAGAGCTTCCTATTTTAAATCATTCTGTTTAACTGGTGGAGACCTTGAAGGTTCTTTCTATAGGGGAGCCAAGTGATTcacacgcacacacacacacacacacacacacac---------CCGAGCATGTACTGCACTGCACA-CATGACTGTGGTGGTGCATTATAT----GCA---------ACAGTCTCTGATCACGCAAAGGTCCAGACTAGTTTGTGAGACAGACACAAAGGGGACTGGGATGATGACATCATCAAGTATTCAATCATAAGCCAGGCTGAGCATCAGCGCACAAGGA-------------AGAAGGTGACCAGATGCCAGGCCTCAAATGAGAACCAGAGACCACGTGACCAA----------------------------------------------CACAGGGACATGCAGATACCTGACCCTG---------------------CAATGTGCTGGACAAAGGGGACAGAGCAACCACAGCCGAAGACACCCGGAGAGGTGGAAATGGGGGTCCCGACATGAT--AGCTTTGGAAGCCCATCTCAGGATCCAGGTCTGTATC-CAAAGGCATCTGAGATTTAGTCAAAAGCTGTAAGGATGGACAACGGGTTTGCATACAGATGACAGAGAAGAGCTGGAAATCCAAATACAGAGGATTTGGAGAGCAGGGAGAGCCATGAGGAAGCTGTCTTA-GCATGAGAGGGTGGAACATGAGACTGGGATGT-GGGTGGAGGAGCTTTGGGAGCTAGAGGATGGATGCAAAGATGACATCACAAAGATG------------------------------------------ACATCACAAAGATTACATCAGAAGTAAAAAAAATGGATGCTGGGGGTGAAGGAGGTT------AAAGGCAGCT--------GTAGGTGTGGCATTAAG--CTGTTACTTTTTTTTTTGGCTTGAGTTGATGAAGTGAGGACCTTTCATCAGAAGCAGACCAGGGGACAGGAGCAG-GGCAGTGAGATACTCAAGTGGTGATGGTAAGCAGGCTTTGGGTGGC-ACGCAGAGGGGAG-CACGGACAA-------------GGAATCCATTGTCAT----GGGGTTACCCATAT--------GGACCAACCAAGCCTAAGGAGCAAACAAATCAAGCCTTGGGCT-------------TCTGAAATGTGGGATTTACAGAAGTCACAGCGCTCTA-GTCAAGCTCCCA-GTGATATATCCAACCCTATGTATTGTTCCATGTAAGCCATCTGC-ACTGTACCCACTCAGGTTGGGAC--TATTGTCCTACAGATGGGGCACGTGAGGGCACAAGC------------------------------GGCTCCAACGTTCTGAAAGCCATTTATCACAG s rn2.chr12 6862440 1526 + 46874691 TAAAGGAGGGGTT-GTCACATGCACAGGCTCCA----------TCCTGAAGAACCCGTCTCAGTACTGCCATGACGGCATTGCCATTTCAGAAT--GTTTCCATGGCAACCATAGGAGTCCAGATTCA-GTCAGTGAAAACCGGCGGGTGTTTGAGGTGAGACAGGAACGGCACAGCTG-TTATCCTTACAGTCCCGTTACATCAGTCATGATCCCACAGGAAAAGACACAGAGAGCTGTGTACCGATCTGACCAGCCATTCATCCTGAACCATGTCTCCCTTCCCTGTGTACCTTGCAAGATTTGGGGCATCC-------TCAAAATGCTTTATGGTATC----AAACACTCCCTTTTTGGTCCCCAGAGCTTCCTGTTTTAAATCATCCTGGTAAACTGATGGGAACCTTGAAGGTTCTTTCTATAGGGGAGCCAGGTGATTcatacacacacacacacacacacacacacacacacacacacacaGAGCATGTACTGCACTGCATGCCATGACTATGGCTGTGCATTCCAT----GCA---------GTGGTCTCTGATCACATGAAGGTCCAGACTAGTGCATG----AGACACAAAGGGGACTGGAATGATGACATCATTGAGGATGCAACCACAAGCCAGGCTGAGCATCAGCGCACAAGGA-------------AGCAGGTGGCCAGACACTTGGCCTCAACTGAGA---------------ACCAC----------------------------------------------CACAGGGACATGCAGTCACCTGGCCCTG---------------------CAATGTGCTGGACAAAGGACACAGAGCAACCACGGTAGAAGACATCCTGAGAGGTGGAAATGGGGGTCCCGACATGAT--AGCTTTGGAAGCCCATC------TCCAGGTCTGTATC-CAAAGGCACCTGAGACATATTCAAAAGCTGTAAGGATGGACAACACGTTTTCACCCAGATGACAGAGAAGAGCTGGAGGTCCAAATGCAGA------GGAAGGCAGGGAGAGCCGTGAGGAAGCTGTCTTA-GCATGAGAGGGTAGAACATGAGATTGGGATGT-GGGTGGAGGAGATTTAGGAACAAGAGGATGAATGCAAAGATGACGTCACAGAGATGATGTCACAATAGTGCCATCACAAAGATGACATCACAAAGGCAACATCACAAAGATGACCTCAGAAGTGAAAACAACGGATGCCGGAGGTAGGGGAGGTT------AATAGCAACT--------GTAGGTGTGGTGTTAGG--CTGCTA---GATTTTTTGACTTGAGTCGATGAAG------CCTTTCATCAGAAGCAGACCAGGGGACAGGAGCAG-GACAGTGagatactcaagtggtgatgttgagcaggcctttggggacaatgtggaggagaa-tggggactaggggtacaaatgtggagttcattgtcatCATCGGGGTTACCCACAT--------GGACCAA-GAAGCCCAAGGAGAAAACAACACAAGCCTTGGGCT-------------TCTGGAATGTGGGG-TTACAGGAGTCACAGAGCTCCA-GTCAAGCTCCTG-ATGACATATCCAACCCCTTTTATTGTTCTACGTAAGCCATTTGC-ACTGTGACAGCTCAAGTCAGGAC--CATTGTCCTAGAGATGGGACGTGTG-------------------------------------------------TGTTCTGGACGCCATTTATGACAG a score=51818.000000 s hg15.chr13_random 255171 488 + 414659 GTCGTTTATCACAAAGTTTGAGTCAAGTCTGCCTGCATGTGCCTAACTACGCA-CACTCCTCCGTGGACCAATTGGCATG---GTCAGGCTGAGACAGCCCC-TGGGGGACAGGCTTAGTTCCTAATGAGATTGAGACGGAATGGGTCCCAGAAGTTTTC-TTTTCATGGTTCACTTGTACAGAATCAAAGATGCTCACTCAGGTCTCTCTGCTCATATATCTTGCTCACTAA-TTTGATTAACCCCTATCAGCCAAGCCCAGGATATATGGGATCCTGGGACAAAGATCTTTGTTTTTTTTGTTGTTGCCCACTGAGAACATGTTGATCAAGGTGCAGTGTAATTATCAGTCCATGAACTCATCAGCCCACTTTTTGTTGTAGTAAACAAATGCAAATTCGGATTCTTGAGCGC-------ATTTCTTTCTTCCT--CTCTGTTTT--------CAGATACGG--------GCCCTAATAATCAAATCACT--------------AATCTGCGTATTTTTATGTTGCCTTAAC s mm3.chr5 2500869 502 - 149719773 ----------------GTTCAATCTAATACGTTTTCATGTGTCTGGGCGTTCA-CCCCCCTTTCCTGAACATCTGAGAGAGAGGCCATGCTGACCCGGTATGGAGGGAGGCAAGCTTGGTTTCTGATG----TAAGATGAAAT-GGCCCCAGAGACTTTA-TTTTTATGGCTCTCTTGCACA-AATCAAAGACATTTGCTCAAACCTCTCTGCTCATTTATCTTATT---TAATTTTTTCTGACCCCTTCCAGGCAAGTCCAGGATGTATTTGATCTTGGAGCAGAGATCTGGATTTCCATTTACGCAGCGCCCTAAGAACCTGTTGATAGAGGAGATAG-TAATTATCAGTCCATTAACTTACCAGCGGATGTTTTGTTATAGCCGATAAGTGCAAATCCAGGTCCTCCAACACTC--GGAATTTATTTCTTCCTCCCCCTGTCTTCCAAAAGGCAGAACCAAAATGTAACGTTTTTATCATTAAATCATC-TCCTATAT-TTCATGTCTGCATATTTCTAGGTAGCATTCAC s rn2.chr12 6863966 502 + 46874691 ----------------GTTCAGTCAAATGTGCTTTCATGTGTCCAGGCACTCATCCCTCCTTTCTTGAACCTCTGAGGCA----CCATGCTGGCCCTGTGTAGTGGGGGGCGAGCATGGTCTCTGATG----TATGATGAAAT-GGCCCCAGAGACTTTATTTTTTAAGGCTCTCTCACACA-AATCAAAGGCATTTGCTCAAACCTCCCTGCTCACTTACCTTATT---TAA-TTTTTCTAACCCTTTTCAGGCAAGACCAGGATGTATTTGATCTTGGAGCAGAGACCTGGAGTTTCATTTAC-CAGCCCCCTGAGAACCTGTTGATAGAGGAGATAGTTAATTATCAGTCCGTTCACTTACCAGCCGATGTTTGGTGATTGCCAGCAAATGTAAATCCAGGTCC-CCAGTGCTCTTAGAACTTCTTTCTTCCTCCCTCTGTCTTGGAAGAAGCAGGTGGAGAATGTAATGTTTTTATAATTAAGTCTTCTTTCTATATCCTCATGTCTGTATATCTCTAGGTAGCATTAAA a score=13440.000000 s hg15.chr13_random 255715 124 + 414659 TCTATAGCGTGTTGCACCAGACTGGGGGATGACAAGATGTGAAGAAAA-GGCCATT-TCTGCCGTATGTCAGAGGCATTCTGGCATATAACCCCATG----CACAGAAAGTGGTAGGACCTAAGATATTC s mm3.chr3 65527921 127 - 160674399 TTTGTGGCGTTTTGCGCTACAAAAGGAGGTGAACAGGTGTGGAGAAAA-GGCTATC-TCTGCACTGTTGAAAAGACATTACAATTCA-ATCTCCATGTCTTCCTAGAGAACGAAAAGGCCAAAAAGACTC s rn2.chr2 62941896 128 - 246339213 TTTGTGGCGTTTTGTGCTACAAAGGAAGGTGAGCAGGTGTGGAGAAAACGGCTATCCTCTGCACTGTC-ATAAGATACTACAATTCA-ATCTCCATTTCTTCTTAGAGAACGAAAAGGCCAAAAAGACTC a score=59824.000000 s hg15.chr13_random 261685 371 + 414659 CCTCATCCATCCTCCGGAATTCCTCGGCTCTCCAACTCAGAAGGTGTCTGTTACATCGTGAAATAATATTTTTCACTAAATTAATCTTGACCTTAAGTCCAAGGTTGAAATTGCAACATTAGCACATATATGGCTTGGCAGCCCTGGCCGAATTCTCATATTAAATTCTCCATCCTGAGCCATTCTTTGATTATCTGCACCCAAGCTGATGATATTCAAGCAAATGAAACTGTATATTAAAGCTACAAACATTTTACGTGGCCCTTGGCGGCTGTATGCTTGAAGATTGGTGGGACTTTCTTGAAAGCCTGCCAATTTAGA---------------CACATGACTTGTAATTGTGAATTCTTCAATTGCAGGTGCTCACACAGCTC s mm3.chr5 2503310 355 - 149719773 CCACAGTCATCCTCCTG-ATTCCTCCACAGTCTGACTCAAAAGGCATCTATCACACTGCGGAATAATATTTCCCACTAAATCAATCTTGACCTTAAGTCCAAGGTTGAAATTGCCACATTAGCACATATATGGCTTGCCAGCCCTGGCGGGATCCTCACATTAAATTC-CTACCTCAAGACATTCTTTGATTATCTTCG---AGTCTGCTCATATTCAAGCAGCTGAAG-TGTATATTAAAGCTACAGACATCTTGTGTGGCCCCTGGCAGC--CACACTTCCAAGATGGAGAGACTGAAGTGAAAGT------GCTTAGA---------------CCGATGATTCGCATTTG-GAATTCTTCCTCTGTAGATGCTGGC-CAGCTC s rn2.chr12 6869199 370 + 46874691 CCACAGTCATCCTCCCG-AATCCCCCACAATCTGACTCAGAAGGCATCTATCACACTGCAGAATAATATTTCCCGCTAAATCAGTCTTGACCTTAAGTCCAAGGTTGAAATTGCCACATTAGCACATATATGGCTTGGCAGCCCTGGCTGGATCCTCACATTAAATTC-CTACCTCCAGCCATTCTTTGATTGTCTGCG---AGTCTGCTCCTATTCGAGCAGCTGAAG-TGTATATTAAAGTTATAGACATCTTGTGTGGCCCCTGGCAGC--CACACTTCCAAGACTCAGAGACTGGAATGAAAGT------GTTTAGACCCTTACACCTCAGGCCCAAGATTCGCATGCG-GAATTCTTCCTCTGTGGGTGATGGG-CAGCTC a score=241.000000 s hg15.chr13_random 262615 11 + 414659 GCAACTTGCTG s mm3.chr5 2503752 11 - 149719773 gCAAGCTTCCA a score=28719.000000 s hg15.chr13_random 262626 329 + 414659 ACTTGGCTTGTTGTGGAATGAGGATGGAAAACTCCAGCAGCAATGAGGAGGCCCACTCACCAACAAGCCAGGCTCCTGCCCGTCACCAACAAGCCAGGCTCCTGCCCGCAGGGTCAGGAAGCTGTGTCCTGTGTCTGGGGCCAGCCTCCTTC-AGCTGGGAGTTGGGGGAGGT--GAAGGGAATGAAACTCCCATCTGGGCTTTGTTCAGCCTCAGTCAAATGACT-AGAAAGAGACGCAGGGCGAGGCTAGAAAGATGCTGTCTGTAAAACTTCCAGAGCCTTTGGGAGAAGGTGAAGATGGGTGCTTTTAAATAGAAAGGCCAGGAAGCAG s mm3.chr5 2503763 288 - 149719773 GCTTGGATTCTTGGGAACCCGGGATGGAAAATTCTAG-AATAAAGACAAGGTTTAATCA---------------------CACTACGAACAC------CTGCCGTCTACAGTATAAGGAAGTTTGGTCCTGTGTCTGAGTCCACTGTCCTCACGG--GGGTGCTGGAGAATGTGAGAAGGGTACAGCCCTCCTCCCTGGGCTTTG-TTGGCTTCAAACAGACACCTCCCACACATGCCTGGGACAGGTCAAGAGGAA--CTACCCACGGAACCT-----ACCCAGTGTGGAAGGTGG-GGTGGAT-CTTTTAAAAAGA-----CAGGAAGTAG s rn2.chr12 6870452 284 + 46874691 GCTTGGATTCTCGGGAAACAAGGATGGAAAATTCTAG-AATAAAGTCAAGGTCCAATCA---------------------CAGTACAAACAC------CTGCTGCCTGCAGCACAAGGAAGTTTGGTCCTGTGTCTGAGTCCACCGTCCTCA-GG--ATGTGTTGGAGAATGTAGGAAGGGTACAGCCCTCCTCTCCCGGGTGTG-CCAGCTT----CAGACACCTCCCACACACACCTGGGACAGGTCAAGAGGAA--CTACCCACAGAACTT-----ACCCTGTATGGAAGGTGGAGGTGGAT-CCTTTAAAAAGA-----CAGGAAGTAG a score=28247.000000 s hg15.chr13_random 264032 692 + 414659 ACTGGCTAAACTATCATTTGGGAATTACTTATTATTTCAATTATCCATGAGATTTCTGTCCACTTGGAGCAGGCAGTtgcatcagtcagaataggccaattgctggaatctata-------------------------acccccacacctcagaagcttaaattaag----ccactgaaagtttatttctcactcatgcaaagttcaatatgaatattttaggtcatgcagttttccttggag--ggatgactcaagggccctcccatcatgtgacATTTCCATGTTCGACAcccaagatgtcaaagcatcaaaaaatgaaaaacatgattaataCCTTTTCTCCAGCTAATCAAGCTAGTTAATGCAGTTCAGTAGATGACAGTCCCATCTAGTGGCAAAAGGCACGTTTG-GAGATGATAACTTGCCTTTGGTCACTTGTGTCAATCCCCTCTCCCACCCCCAGGCTCCATcaccccaacacacagtccatcagcaagtccaactggcttcatctccaaaccatcccacacctacttcatggactctgctacccccagaccaagctcctgccatgtgttgcctgaactattgcaaaatccttctagctgaatgtcctcctcccacccatccttccatgatctgttctccacagagcagccaaagagaGTGTTCGGCTATTATTTTATTTTGTTTGTGTGCCGTTTAAAGGGTTCTGTTTCC s mm3.chr5 2507279 463 - 149719773 ACTGGATACACTGTCATTTAGGTCTCAAGTATTGTATCAACTAACTAAAAGGCTTCTCTCTGCTGAGAGCCAGCCATTGTCACTGTCACAACAGGCCAGTTACTGGGG---------------------------------------------AAAAAAAAAAAAAAAACCTCCAATGAAGGC-TGAATCTCACT----CAAAGGGCCACATGAATGTTCTACATTGCTCCGTCCTCAGTCAAGG-GGGTGACTCAAAGGTCCTCCCATCATGCGACATTTCTG-ACTCAGTACCCATGATGTAAAAGCATCCCAAAAT-AAAAACACGATGAATTCACTCTCTCTGCCT-GCCAAGGCAGCCACGGCAGTTCAGCAAATGATAGTC-TGCCTAACAGGGAAAAACAAAAATGTGAGAAG-------------------------------------------CCAGG-----------------ACGG------------------TGGCTTC----CTAGACATCCTCGCTGCCATTTTA--------------CTCGGCTC-----CCTTCC---------------------------------TGTACTTATCTCCCCCTTCCCCAAATACCCCCTCTCTAACTCCC------------------------------------------------------------------------ s rn2.chr12 6873939 493 + 46874691 ACTGGACGCACTGTCATTTAGGCCTCAAGTATTGTATCAATTAACCAAAAGGCTTCTCTCTGCTTAGAGCCAGCCGTTGTCACTGTCAGAATGGGCTACTCACTGGGGCCAAAATGAAAAAGAGaaaacaaaacaaagcaaaacaaaacaaaacaaaacaaaacaaaacCCTCCAACGAAGGCTTGGTTCTCACT----CAAAGGGCAGCATGAATGCTCTGTGTTGCTCCGTCCTCAACCAAGGAGAGTGACTCAAAGGTCCTCCCATCATGCGACATTTCTG-ACTCAATACCCATGATGTAAAAGCATCTATAAAT-AAAAACACGATTAATT--CTCTCTCTGGTT-GCCAAG--------------CCAGCAAATGACGGTCTTACCTAATAAAGGAAAAAAAACCTGTAAGAAG-------------------------------------------CCAGG-----------------ACTG------------------TGGCTGT----CCAGACATCCTTACTGTTTTCTTA--------------CTCAGCCC---CTCCTTCT---------------------------------GCTGTTTATCCCCTGCCTTCCCAAA---CCCCTATCAAATCAC------------------------------------------------------------------------- a score=9554.000000 s hg15.chr13_random 265081 201 + 414659 CTAAGAATTTTCAAGCATACACAAAatatacccagatacccaactgtaatacttatcaactcatggccagtctcgtttcagctacacccctcctcactgttccattttctgtgtactg-----ttttgcagcaactccttgacagcaAAGgagctctataaaccacaaatcagagcaagttacttcctagctt---------aaaaa--cttttaaa s mm3.chr5 2507742 162 - 149719773 CTAGAAAT---------------AACTGTAGCCAGATATT-----------CCCCTTTACCCTTGTCCTGCCTCCTGT--------------------------GTTTACCTGTATTTATTATGTTTGCAGCAAGTCCTTGACAATAGAG--GTCCTGTAAAACACAAATCA-ATCAAATCTCTCCCTTTCTTAAAAAAAAAAAAAAACCTACCACA s rn2.chr12 6874432 136 + 46874691 -------------------------CTGCACCCAGATATTC----------CCCCTTTACCCTTGTCCTGCCTCC----------------------------------CATGTATTGATTATTTCTGCAGCAAGTCCTTGACAATAGAG--ATCCTATAAAACACAAATCA-TTCACGTCTCTCCCTTCCTT---------AAAAAACCTGCCACA a score=23501.000000 s hg15.chr13_random 265286 349 + 414659 ctg-------------cagggcatttacaatgaaacctttcggctcattctggcacccagagccccgcctt-------------acttgg--cctgctaatctcttt----aatgg--tatttcctcactctgccccagccacagccac-cctctattccttgggctcactcagttgta---tccctaccccagtgcctttgcacttgctgcactgctgcctaaactactttactactctac-at-ttatgtggctggccctgcctgggcattcacggctcaactctcatctgctctgaaaggcctccccagcgagtctgtctctggaaacacccccagccccaCTCCTCTAGCCAG---CCACTTTCCACCTTAACACTCTGAAACTAGTT s mm3.chr5 2508221 327 - 149719773 CTGCCACAGAGTCCACCAGGGCATTGCC-ATAAACCCTGCC-CCTCCCACTAGTACTCAGAGCGCCCACCCCACACACACACACACTCGGTCCCTGCTAACCTTTCT-GTGAGTGGAGCAGTTTTTCATTCTTTCCCTGACACAACCACACCTCTGCTCCTTGGCCTTACTGGGTGATTGATTCTctacctcaggacctttgcacctgctgtGTTACTA-----------------ACCTATTATGTTATGTGACTG-TTCTGATGTGGCAGTCACAACTCAGCTC-------------------------------CTGTGTCA---------CCCTACCTCAT----CGAGCCATGAGCCATGTTCTACTTTACCTCTGAGAGCCTGGCT s rn2.chr12 6874682 320 + 46874691 CTGCCACAGAGTCTCCCAAGACATCGCCCATGAGCCCTGCC-CCTCCTGTTAGCACTCGCAG-GCCCTCTG-------------ACTGGGTCCCTGCTAAGCTCTCTTGGGAATGGGTAATTTTTTTATTCTTTCCCTGACCCGGCCACCCTTCTGCTCCTTGGGTTCACTGAGTGATT----CCCTACCCCAGGACCTTGGCACCTGCTGTGTGGCTACCCAGCAT-CTTTACCCACCTAC-AGGTTATGTGACTGGTTCTGATGTAGCAGTCACAACTCCACTC-------------------------------CTGTGTCT---------CCCTACCCCAT--------CCAT---CCACTTCCTAGCTTACCTCTGACAGCCTGGCT a score=10523.000000 s hg15.chr13_random 265840 479 + 414659 GTGCATGGCATATGATAAGCACTTAATATTTATTGAGTAAAAACAAACAAGAATACAATTTTAAAGTGTTAGCTTTAGGGCAGTTTTTGAAAATAAATTTTCCTGGTGCATTTATAACAGCATTTGTTAGaaaaaaatatatttata----caaatttattttttGAGAGAAAAAATACCACTTGTAGTGCAAAGGCATGTTCTTCCGTGAAA---------GATCATACATGACTCAGGCTCTGATTCTGCCAAGAGGAAAA-----GGAAGTCAGGACAACGTGACTATTTTTAGTCCTTAGAAGTAGCCATGCCTCCAGCTAAGATGTGAATGGAGGAATCTGTGGCTTA---------------------TAAAGT------TGATTTGGATGATGAGACCATACTCTG---------------------------------------AAGACAAACTCTTAATACCGTGCCATGACAGAAAAACAT--------TAAGGAGACAAGATTCAT----GAATTCTGAAATGAGAAGTGGAAGTTTAAAAatatatatatatatatatatatt s mm3.chr5 2508919 483 - 149719773 GTGCGGGGGACACGG-----------------------ACAGACA-GAAAGAATGAAGGCTTAAAGTATTACCTTTAGT---GTTTTTAAAAATCCACTTCCTTGCTGCATTTTCAGTAGTGCTTGCTAG-GAAAAATATAATCTAATTTATGATTTTATCTTTGGGGAGAA----------------------------TTTAGCCTTGTGA----------ATCTTTAGTGGCACA-GCTCTGAGTCCAGAAGCAAGGAGGAGGGTGGCTGTCAGTGGCA---GGCTATTTTTAG----CGGTGGC--TCAGGGCTCCAACTGAGGTGTAAACCCTGGGACTTGTAGCTCAAGTTTGTGAGCAGGAGCAGGCTAGAGCTTGGTGTGGCTCCGCTGAGAAGCCTATGTCCTGGGCCGTGCATAGCCCTGGGTCAACTCCGCCCCCACCCTCAGCACAAGAAGTGGGCATCATTGCATGCCAGAAAAACACATCTATGAAAGAAAGACAAGAAACCTAAAAGCGTTCAGAGATCAGATGTGAAAG---AAAAAC-------------TCTAGGTT s rn2.chr12 6875635 376 + 46874691 -----GGGGGGAAAG-----------------------AGAGACAAGGGAGGGGGGAGAAAAAACTTATTACCTTTAGG---GTTTTTAAAA-TCCATTTCCTTGCTGCATCTCCAGTA--------------------------------TGATTATATGTTTGGGGAAAA----------------------------TTCAGCCTTGTGACGGTAGCGACATCTGAAGTGACATAAGCTCTGAGCCCACTAACAAGGAGG-----------------------------------------------------CTCCAACTCAGGTGTAAACCCTGGGACTTGTAGCTCATCTGTGTGAGCAGAAGCAGACTGGAGCTCGGTGTAGCTCAGCTGAGAAGCCTAGG-CCTGGGC-ATGCATAGCCCTGGGTCAACTCCGCCCCC----------------GTGGGCATCGTGGCACGACGGAAA-------------------GACAGGAAGCCCAAT-GAATTCAGAAATAAGACGTGAAAG---AAAAAC-------------TTTAGGTC a score=3429.000000 s hg15.chr13_random 266597 568 + 414659 TACCAAAAGGTAAAATTTGAGATCGTTAAAGAAGAGCCTCCTTTTAAGGCCTTTGAGTATGTGGGGAGCCCACTTGGTGGGANNGNANNNGNAGGNGANNNGGANNGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGAGTATTTGGGGATCCTATTTGATGGAAGGCAAATTGTAAGTGAAATTACATTGTGCTTCCAATTTGCCACTACCAAATTTTAAAAC-AATATCCACCTGTGCCCTCATCCTCTCCCACCCACATGGGCTCTCCC-TCACCCACTGTGCTTCTTCAACCCTTCCCTGTGTTTAGAACTGGACTCTCTCTTCTTTCTGCCTGTAGGAATATTTTTCTAGACCTGATCTTTAGTATTTCTGAATGTGAGTGCATATGGCTTTACACAAAGAATATGTAGTAGAAAAGCTTCGTGTTGATTACATTTGTATTAATCAGGTGCTTTGAAACCCACTAGAAGGGTATCCTCTTATAGTGCT s mm3.chr5 2509402 235 - 149719773 TGTAGAAA-------------------AAAGAAAAGCC-CCGAGAAGGGCCCTTGAATATTCGCTGAGCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACTATAAGTGAAAACACCTGGTA---CTTATTATTCTGGATCATGTTCTAAGACAAAGGACCACCGGTGCACCCA-------------ACCTAGGCCCCACC-CCACCCTC---GACCCTTCACCCCTTCCCTGTCTTCAGAAATGAGAT-TCTTTTC-CGCTGCCTGGAGGAAGATTTTTCTGGGACTGCCCTTCCGTA------------------------------------------------------------------------------------------------------------------------GCT s rn2.chr12 6876011 234 + 46874691 TGTG-----------------------AAAGGAAAGCC-GGGAGAAAGGCCCTTGAGCGTTCGCTGAGCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGCTGTAAGCGAAAGTACCTGGTATTTCTCGTCATTCTGGCTCGTGTTCTAAGACAAAGGACAACCTGTACGTCCG-------------AACTAGGCCCCACCTCCACCCAC---GATCCTTCGCCCCTTCC-GGTCCTCAGGACTGAGAT-TCTCTTC-CGCTGTCTGGAGGAAGATTTTTCTGGGACTGCCCTTCGGTA------------------------------------------------------------------------------------------------------------------------TCT a score=134366.000000 s hg15.chr13_random 267167 1698 + 414659 TCACATTGATGCCATGGTGTGAGTCCCTGGATCTGGCTGATTTGAAGCAGGA-------GGTACCTATGCAGGACTGGGTGCTCCCCAGC-------------------------CTTTCATGCACCCTCCAGCTTTCCAGACA------GCTTGGCGGGATGACAGTGTGCCCTCAACCTTCTCCCA-CACATCCAACGCTTCCAAGGAGAACAAGGGCATCATTGATTTCAGGCGCTGGTAGGAATGTGCAGGGGCGGGCAGGCTTCCAGC----ACTCAA--GCTTCCCTTGAAGATAGAAAATGCAAGGCTACCAGGAGCACTGAGAGGCCCCAGGCTGGGCCCAGCCAGGAATCCACCGGGAAATGC-TCTTGCCTGGCTTCCGGAGCCTCAGGGCTGGAGCGGACACAGGGCTCCTGTCTTG--------GTGCCTTCAGTGGCTGGGCTGGCCTGGGAGTCTGGG--GCAGAAGTTTATTTAAAGAACCTACTCTGAGTTCTGCGGGTGGCGCAGATCCAAAAATTTCATATATATTCAATGTCAGactaagcatttttctgtgtggcagcaaaaatcttttacataattagctcatttaagcctcacacatgtttatgaggtaggatcactatcattttacactcagttgaggaaactgagtcaaagagaagaatgaaaccgacctgaaatcacacagccagtaacaaggggggctgggaatgaacgcagagccctcccaccccaaggtccaagttcatggccgctaGCAAGCATAC-AGCcagcatagaaggagatgaagagcacagaccttgtaccttgct-tcctggctcagat------cccagctctgccacttttcagctgcgtgactttagcaggctgctaaacctttctgtgcatcagttttt-----------ttgagagtaaaatgagataataataggagctagcacatgaggctgtatgtggattaaatcaattaatataagtgagtgctgaaaacagcccctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtgtgtCTGCTGTCATACATCCTAAATACGACTTCTCATTCCTGCACAATCTTGTTTTGTTAGCTCC-TTCTCCACCTGTCAGTGAAGAACATCTAACACCTG-AAACCCTTGCCAATTATTTTGGAA--AGAGACTTTCTGGAGGAGGTCAGCCAATGCCACTTTCCAGCTGTTGTATCTTCTTTCCATCCAGCTGGACATTGCTAGATGATAT------------CTGCTGCTTGCAAAGGTGCTGGGAGGCCTTGCTTCCAGGGCTTGGTGGGCACCATG---TTACCCAGAGGAGACGGTGCCCAGCCAGCCTCTGCCAGATGGGTGACTGGGCACCACCCCTGCTGCTGATGCCACTGGCACTCCCCAGGCAGAGGCAGCTCTGTTCTCTGAAGCCCTCATTGTGCCAGAGCCATATGGGGCCACCGCCGGCCACCTGCCTGCAGGGCCTGACATAGCACTTGAGGGAATTGGCTTTTGGTTTTTCCCACAGAATCCATGAACTCATGGGAGGCTGCGCTGTGAGTCA-----GAAATGAGAATTA------ACCCTCCTCTCC-ATTGCCGGAAGCCCTGTTATTATCCCCCAGCCCCATCTTC---CTCATTCCCCGACTTCGCCTCCTCCCCACCTC-CTTCAGTCAGAAGTCCTCAACCCGACTCCCTGTGAAGGCCCG-TGGGATGGCCTTGGGAGACCTGCACTC-TAACACTGGACATGTG s mm3.chr5 2509639 1518 - 149719773 CCTCATCGTTATTTTGCTGAGCATCCCTGG--TCAGCTGATATAAAGCAAGAAGTGAGTGGTACCCAGGCTGCCGCGCATCCTCTCCCAC-----------------ACAGGCCTGCTTCCTGCTCTCCACTATTTTCCAGAGACCTGGTGTTTGGCTG---GACAGGATGGCTCCAGCCTTCCCCTGCCAGGCCCACGGCCTCTGCTGATATCAAGAGC----TTATGGTGAGACCCTGGCAGGACTGCGCAGGCCC-AACAGGCTGCCAGCCACAACCCCACCCCTCACCCTCAGCAAAGAGAACA-GCAGCAGCCTGCCTCACCAGAAGGGTTTGGGCTGAG-CTGGCAAGGCAGCGACAAGCAAAAAAGTCTCACGGGTTTTCCATGGCGCCA----CAAACTGGATACAGGGCTCCTGTCTAAAGCCGGATGAGGCTTCATCCATTGAGCTG--CTG---GTCCGTGCAGC---AGTTTATTTAAAGAAGCCAC--------------------------------------ATAGAGTCCAGGTCCGGGTGAGTGGATTTTGGCTTGCCAGC-AAAACCGGAGACAATATCAGCTCATGTAAACCCTCTGTGTCCTGGTAAGATAGAGTGGATCTC-TTTCACACTCAACTAAAGAAAC-----------------CGAAGCTCGTGTGAGATCGCACCGATAACAGAAAGAGATTCTGGGGATGAACCCTGAGCGCTCCCACGCTG----------CCTCGGCCATTTCCGAGCACAG-------------------------ACACAGATCTT----CCTGCTGTCctgcctgggatcatagccccagttctgcctccttgttgttgtgtaactctgtagggtggctaaatacgtctgtgcatcatttcct-----------atgagaataaa----------cataatacctagggtgtgaagttgtctgtggattaaatcagtCTGCATTCATGAAGGTT-------------GGGGAATGT-------------------------------------------------------CACCATATGCCCTTAATCTTGCTTCTCTTTTCTGCATAACTAAGTTTTGCCAGCTCTGGTCTCTAC-------------ACGTCTAACCCTTATAAGCCAATTCAGGCTATTTTAGCACTAAAGAATTTCCACAGCAGAGAG--------------------GCTG--TCTGCTTTCT-CCCAGTTGGACATGGTTAGGCGATGCCCACATTCAAAGCCACTCCCCGCAGAGGGGTCGGAATGACT---------------GTGGGAGCCGTGACAGTCTCCAGGTGACACGGTACCCT-CTAGCCTCTGCCAGATGGGTGG-TGGGAGACACCCCCGCTACTGATACCCCCAGGGTGACCAACACAGAGTT-GCCCCATCCTCCAAG-CGTCCACTGTGCCACGGTGATGTGGTGTCT-AGCAGGCAGCCTGCACATAGCACCTTCCAGCATACTGAACGGAGCCAGCAATTGGGTTTCCTTG-AGCAGTCATGAATTCATGAGATGCTGGGATGGAGGACAGATTTGAAGTAGAGGTTAATGGAGACCCCTATCCCC-AATTCTCAAATCTCTGTTGCTATCCATCATCTACCTCCTCACACCTATACCCGGAGACTCTATACTCCTCGCCTCTCTCTAGTCAGAGGGTCT-AACCTGAC-----AGAAAGGCTTCATGGGGCAGCCAT--GAAGCCCGCACTCTTGTGATATGATATGTA s rn2.chr12 6876427 1561 + 46874691 CCTCGTCATTATTTTGCTGAGCATCCCTGG--CCAGCTGATATAAACCAAGAAGTCAGTGGTACCCAGACTGCAGAGCATGCTCTCCCACCCAGGCCTCTACCTCTCACAGGCCTGCTTCCTGCTCTCCACTGTTTTCCAGAGGCCTGGTGCTTTGCTG---GACAGGATGACCTCAGCCTTCCCCTGCCAGACCCACTGTCTCTGCTGGTATCAAGAAC----TTACAGTGAGACCCTGTCAGGACTGCGCAGGCGC-AGTAGGCTGCCAGCCACAACTCCACCCCTCACCCTCAGCAAAGAGAACA-GGGGCAGCCTGCCTTGCTAGAAAGGTTTGGGCTGAG-CTGTCAAGGCAGCACCAACCAAAAACGTCTCACAGGTTTTCCATGGCGCCA----CAAGCTGGATACAGGGCTCCTGCCTAAAGCCGGATGAGGCTTCATTCATTGAACTA--CTG---GTCCACACAGCGGAAGTTTATTTAAAGAAACGAC--------------------------------------ATAAAGTCCGGGTCCGGGTGAGTGGTTT---------------AAACCCGAGACAGTATCAGCTCATGTAAACCTGCTGTGTCCTGGTAAGATAGAGTGGATCTT-TTTCACACTCAAGTAAGGAAAC-----------------TGAAAGCCACGTGAGATCGCACAGATAACAGGAAGAGACTCTGCGGATGAACCCTGAGCGCTCCGATGCTG----------CCTCGGCCATTTCCAAGCATAGAAGCTATCTCAGTACCCGATAGagaacacagagctt----cctgctattctgcctgggatcatag-cccagttctgccaccttgttgctgtgtgattctggcggtttgctaaacatttctgtgcgtcatttcctttgtgtataagatgagagtaaa----------cagaatacctcgggtgtgaagttgtctgtggattaaatcagtctgcatacatgAGTGTTG------------GGGGAATGT-------------------------------------------------------CACCATAAGCCCTTTATC-TGCTTCTCTTTTCTGCATAACCAAGCTTTGCCAGCTCTGGCCTCTAC-------------GTGTCTAACCTTTATAAACCAATTCGGATTATTTTAGCGCTGGGGAATTTCCACAGAAGAGAGGC-----CCGAGTTCTAGCTGCTG--TCTGCTTTCTCCCCACCTGGAAAAGGTTA-GCGGTGTTCATGTTCAAAACCACCCCCTGCAGAAGGCTCGGAATGCCT---------------GTGTGAACCGTGAAGGTCTCCAGATGACATGGTAGCCT--TCGCCTCTGCCAGACCGGTGA-TGAGCAACCCCCCTACTACTGATGCCACCA--GTGACCTGCGAAGAGTT-GTCCCATCCTCTAAA---------GTGCCACGGTGATGTGGTGCCA-AGTAGGCAGTCTGCACACAGCACTTTCCAGCATACTGAAAGGAACCAGCAATTGGGTTTTCTTG-AGCGGTCATGAATTCAGGAGATGCTGGGCTGGAGGGCAGATCTGAAGTAGAAGTTAATGGGGACCCCCTCCCCCAAATTCTCAAAGCTCCATTGCTAGCCATCATCTACCTCCCGAC-CCTGTACCCGAAGACTCTATCCTCCTCTCCTCTCTCTAGTCAGAGGGTTT-AACCCAAC-----ACAAAGGCCAT-TGGGGCAGCCAT--GAGGCCCACACTC-TGTGTTAAGATACATA a score=60428.000000 s hg15.chr13_random 268865 1585 + 414659 CAAATCCTGGGAAGATGCTTACAGTTATCAGCATCCTCTCAAAAGAGGTTCATCACCTGAAAAAGTCAAGGACACTGGCTTCTATAGGATGAGCCAAC-CAGTTAGGTTGCATCCTCCGGGAAAGGCTCCCAGATAGAGTTATGTGTGCAGAGGGGC-TATAGCTGAGTAACTCCTGTGGAGGGGCCAGGGGAGAAGTAAGCCAGCCCCACAGAGAGCTCTGGAG--CACAGACCACCCAGGAGAGGAATCCCGTGGTGGGCAGAAATGCCAGGCCTTTGGGCCACTGCCTTGCTCTTATGTGGGCCTGGGCCAGC---------------------CCAAGGAGGGCACAGTCCTTTTTGAAAGCTGAAGCTT----AGTCTGACGAGCTGTGAGTGGACAGCTGTCAGT--------AGCCACGCTCCTTGTAGCTGGGCCTGGAATCCTTCCTAGAAGGGGAGTGCGGTGCCTGCTGCATGGCCCTGGGCAGCTGCTGTGCACAGCTGCTGGCGGACCCTCACCAAGGTCCATCAGACCTGCCAAGGCAAACCTGAATCCTATATGTGACTCCATCTAAGCCAAGCTGGGACTCTTCCACTCT---TAACTTGG-----------------------------------------------AAAATGTGCATT---CCCAGCTGCTAGGTCCTGAACTTGACCTGGGGAAGAGAACGACACGGCCATGCTTGGGCAGGAGAAGCTAGGTGTAGGCAAGGGAATCTTTACCTTATGAATGGGTTGTATACATGTTGCTTGTTGTTTAGAGAGTGGAATACATTTTGTCCTGGAAATCCTACTATAAATGGGGGGATGCGTACCTGGGCCTTCTTGCAAAAGCCTGTTAAATTCCTAATGATGTTGAAATGGTGGGAAGGGTCATCCAGGGAGGACCTCCACGCCCGCCCATCTCCTCTGGGTTGCCCGGGCAATCCTGCAGGAGCCGAGGCTGGACGCAGCTGACCCCAACAGACAGGAGAAACAAGCCAGCACCACCGGAGAGAACCAGGCTGAAAG-GGTGACCCAGGGCTTCCGTGGCCTAGAATGAGAGAGACATCGCATGGCGCAAGGTTCCAAGTAGGGTTCGCGGCGGGGAGGGCCCCTGCCGCAAAGGGACTCAGTGTTGTGCGAGGGAGGTGAAGTCGCTTCTTGATCAGCCGTATTTCTTGCCTACACT--TGACACCGTCACCAGCCCAGGCGCCTTTCCGGTCACCCTCACGGAAAGGCTCATCC------ACGCTGGAAGGAGGGAA--------CCTCCTCGTTAACCTCTAGCATGCCGGTGCCTGCCA---CCCCAGGGCGCGGGAGCCCGCAGGAGCAG-GCGTGTGGACGTCCTGAGAGCTGCCACTAGATGGCGCGTCTGCCCTGCCTACTCAGGAGCCCCGCTCAGGGCACCGGGTGCGGGAGCCCGGCTAATTGCCCTCTAATGAGAAGGCTGCTCCCAAAGTGCCCTCCTCGCAGGGAAAGCCCCAGGCTCCTATCAAAGGGAAT-GGCTTATTTATCCTCTAACGTGAAGAAACTTCCACACAGCATCAATTAAACACATTAAATGTGACCAGAGTGAGAAAACATCTAAAGGATAGAATATTGAATTGTTGCCACTGACAAATATCAAACCACCCATTCTG--GTCTC---GGTGG s mm3.chr5 2511157 1102 - 149719773 -------TGGAAAGACACCCCCACCCATTACCACACCTTGATAGCTGGTCC-CCAGCTG--------------GCTAGCTGGTTCCCGCT--GCTAACTATGTCACATTGAGATCTCCTGGGGAGACTCTAAGATGGCA----------GGAGAGGCACGTGGCTGAGTAACTTCCCTGGAGGA--CAGAGGAGAAGCTAGCCACCCAATCCAGGATCTCAGAAGCACACACACCACCCATCAAAGGTCCCTG-TGATGAGCAGACATCCTGAGCCCTGAGGCCTCT-CCCTCCTCTGAGGATAGCCGAGTCCTATCTGGCTACTTATACTGGATAACTACTATGGGTACTTCCTAGATTGAACCCTGAGACTTCCTCAGACTGAGGAACC--------ACATCT--------------AGCTCAATGTCTTGTTACTGGGCATCGTGTACTTCCCGAAATGGGAATCCTGTGCCCAAAGCAAGG-CCTGGGCAGCCACCACCCACCTCCGCAG--------------------ATCAG-------------------------------------------------------TCCTCCCACTCC---CTGCTCAG-----------------------------------------------AAAAGGTGCCCTTATCCATGTTAGCGGGTCCTCTACTTGATAGGGAAAAGATCATGACAGGAGCCTGC----AGAGCAGAAGTGGACTGTAGGCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCAAGGGGATCGAGGCCAGAAGAGGCAACGCAGGGACTATGAGATCATGA-------GGACACCACATGGC----------------AGTTTG-------------------------------------------------------TAACCTACCAATTACCTGAGTTTCTTGCCTAAATG--TGCCTCATTCA------CATAGACCCTAAAAACCATCCTCACAGAACGATTAGTCGGGCTGGACACAGAGAACAGAGAT-GCCCCAGCTCCCTAATTAACCTTTT-TGCTCCAGTACTGGACATGCCCTCAGGTCATTAGAG-CGGCAAGAGAGCCGCATGTGGGTATTCTGGGAGTGGCCACTAGATGGCGCATCCGCCCTGCCAACCCCGGA------------GCACTGTGTGATGGAGCC-------TTACCCTTTAATGAGCAAGCTGCTCCCTAAGGACC-TCAAGGCAGGGAAAGCCGCAGCCTCCCACCAAATGTTTCAGGTTTGCTTATCCTCAAGCGTGAGAACATTTCCCCA--GCACC---------------ACCTGGCAAA-GTAAGAGCCAGCC---------GGATACAGAGGGACTTTGGCACACAGAT---AAACCACCCACCCTGCTGCCCTCCCGGCTA s rn2.chr12 6878121 1105 + 46874691 -------TGGAAAGACACACACCCCCAATATCACAGC---------------------------------------AGCTGGTACAAGCT--GCCAAC--------ACTGATATCTCCGCGGGAGATCCCAAGATGGCA----------GGAGGGGCATGTGGCTGAGTAGCTTCCCTGGAG------------AAGCTAGCCACCCAATCCAGGAACTCAGAAGCACACACACCACCCATCAAAGGCCCCCGGTGGTGAGCAGACATGCTGAGCCCCGAGACCCCT-CCCTCCTCTAAGGATAGCTGGGTACTATCTGGATAGATATACTGCGTTACTAAAATGGCTACTCCTTAGATTCAACACTGAGGCTTGCTCAGTCTGAGGAACC--------TCATCTGGAGGCTGGCATCCAGTTCAGTGTCTTCTCACTGGGCACCATGCACTTCCCAAAATGGGAATTCTGGTCCTACAGTGAGG-CTGGGGCGGCCACCACCCACCTCCGCGA--------------------ATCAT-------------------------------------------------------TGCTCCCACTCCGGCCTGCCCGGGAGAGCTAAATCCTACAGAGGTCCAGTCTTAACCAAGCTGGGACTCTAACAGGCACCCTTAGCCCTGTTAGCGGGTCTTCTACTTGATAGGGAAAAGATAATGACAGGGTCCTGC----AGAGCAGAACTGGACTGTAGGCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCAAAGGGATCGAGACCGGAAGAGGCAACGAAAGGACTAAGATATCTTGA-------GGACACCGCGTGGC----------------AGTTTG-------------------------------------------------------TTACCTCCCAATTACCTGAGTTTCTTGCCTAAATGGATGCCTCATTCA------CACAGATCCTAACAACCATCCTCACAGAACGATTAGTCAGATTGGACACAGAGAGCAGGGATAGTCCCCACTCTCTAATTAACCTTTC-TGCTCGAGTGTTGGACATGCCCTCGGGTCATTAGAG-CGGCAGGAGAGACGCAGGTGGATATTCTGGGAGTGGCCACTAGGTGGCGCATCCGCCCTGCCAACCCCGGA------------GCACCTTATGATGGAGCC-------TTACCCTTGAATGGGTATGCTGCTCCTTAAGGACC--CAAGGCAGGGAAAGCC------TCGCACCAAGTGTTTCAGGTTTGCTTATCCTCCAGCATGAGAACACTTCCTCACAGCACC---------------ATCTGGCAAAAGTAAGAACCAGAC---------GAATACAGAGGGA-------------------AACCACCCACCCTGTCGTCCT---GGGTA a score=20498.000000 s hg15.chr13_random 271227 261 + 414659 ACGGTTCTCAAATTTTCTGAGATCAGATGGAGT-----------------------------------------------------------------------------------------CTGCCCCTCCACCTGGCAGGCTGAAGGCTGGGGCTTGCAGAGATGTGGTGTCTGTTACCCCAGACACTGCAGG-TGACCTTGCCTCTTACTAACTTTTCTTATCAGTACCATTTGGACCCTCACACTCATGAGGATGTGGGTGATAATGTGGA--------GGTTAAATAATATGGTCACTGATGATATTTTCTATACTGTCTGTTTGCAGGGCAGAGTCTTACAGATCTGGACCAC s mm3.chr5 2512274 323 - 149719773 ATGGGTCTCAAGTTTACGTAGATCAGAGATGCT-------GGAGGTTTAAGCAGGAGTGGTGTGAAGGGCTAGGGCGATGCTCGGCGGTAGTGAGTATCCCGCCTGGTCCTGGGTGTG----CTGCCCCCAGAACCGACAA---GAAGAAAGGAGATGCCATCGCTATG----CCGCTACTCAGCACATGGCCAGCCAAACTCCTCCGGTGGTGGCTTCGTTTCTCAGTCTCACATGGAGGCTCACACTTGTCAAAATGTGAGTT---ATGTGAACAG-----AATAAAAAGGGAGAGAGACAGCTCTTCTTTTC-------TTGGTCCATAAAGCAGATTCTGAAAGGTTTG---CAC s rn2.chr12 6879241 339 + 46874691 ATGGGTCTCAAGTTTACGAAAATCAGAGAGGCTAAGGGTTGGAGGTTTAAGCAGGCACAGTGTGAAGGGCTAGGGTGATGTTCGGTGGTAGTGGGTATCCTGCCTGGTCCTGGGTGTGACCCCCCCCCCCAGCTCCGACAA---GAAATAAAGAGATGCCAGTGTTATG----ACGCTACTTGGCGCGTGGCAGGCCAATCTCCTCCCGTGGTAGCTTCAATTCTCAGTTTCATATGGAGCCTCACACTTGTCAAGATGTGAGTT---ACGTGAAAAAGCTTTAAAAAAAAAAAAAAGAGCCTGGTCTTCTTTTC-------TTGGTCCATAAGGCAGATTCTGAAAGGTTTG---CAC a score=83695.000000 s hg15.chr13_random 271488 873 + 414659 AGCAGACCTGAATCAAATAAGAATATGCCCAGATATGGGGTATTCGGGAGCAGATTATGAAACAAGGAAACTGAAGTCCTAAGCAGATCCACAGTTCCAAATTCTGAACCGCTTGAGGCCACATCAGATACAGGATGCTATTATGCTATTAGGGCTGTGGC-TTAGTACATTATACAGATGGTGGGGAAAGGCCTGCAGGAGAAAGGCCTACCATTCCTGGATTCC-AAAAATAGTGGTCTCCTAAGCAATCGATCTGCTTTTATGTTTAATATTCATCTGTCTCCCTTTCCCAGTTAACTCCTAGAGCCAAACTCACGGCCCACAGGAAGGAACCATATCAACCTGCACGGTGTGCTTTTAATTTTCCTCACCTTGTTCCAGCC-TCTATTTTATGTTGCCACTCTTTTCTTTCCTTTCTTTTTTGCTCAGGCTTTTAGTACATATTTAACTTTTATTTTATGTCTCCTCCTCTTCAAACCACCTTAAGTCCTTTT--------------------TGGAATAGAGCAGAACACA-----AATAAAATAGGTGTCAGATACATTCTCTCTGTGACCTTGCATTGGGTCAAAGGACTCATGAATGTGTGTTACCTGTAATCTTTTGTGGAAAAGAGGATTTTAAAATTCTCTGCCAGCCTTCCCAAGTGGTGACATTTTCCTATACTACTTCTTTACTATTTCCTTTAATTTTGATTAACCTTTGACTCAGACACCTCTG-ACTAGTA---TCTTCTAGACTTTTCT-CTTTTGCATGTAATACACAAAGCCTTCTTTTTTTA--TTTTCTAATTTCAGAAAGTGTATATTAATTT--ATTAGAGAACTTAGGTGGCTGATTGAAAAAAAAAGGAGGGAGGTACAGATTTAAACTTTTTTCCATCAAGAG s mm3.chr5 2512780 755 - 149719773 aGTAAA-------AATAGAACCATGTGCCT-TATACAGGGTGTTCGGGAACAGACT-----------GAGCTG------------GGCCCACGGTTGTATC-TCAGAGCTACGGGAGGCCGCAGCAGATGCAGG--------ATGCTATTAGGATTGTGGCTTTCCTACGTTACACAGATGGTGGAG-GGGGCCTGCAGGAGAGAGGCCTGT--TTCCTGGCCTCCAAAAAATACTGCTCTCCTGAGCAACCGATCTCCCTTTATATCACTTGCTCATCCGTTTCCCTTGTTCCGATAGCTCCCAGGG-----CTGGTGGCCCACTGGAAGGACATGTCTGAGTCCACAC-GTGGATCTTCCATTACCGGTACCCCCTCCCGGCT-CCTGCT-----GTGAAACACAGGCCCTTCCT-----------------TTTTACTGTACTTTCAACTTCTGTTGTGCGTCCCTTTA---ATAAGCTACCTCAAGTCCTTTC--------------------CAGAACAGAACAGAACATACACAAAGCAAAAGAGGCTCTGGAGACCTTTTCTCTGTGTCCTTAGGTT----------------------------------ACCTCCCCAGGAAAAAA--ATTTCTAAATTTTCTGCCAGACTTCCCAAGCGGTGACATTTT-CTATAACGCCTCT-----------CCTAA----GAGTTGCCGCTCATTTGGGCGGCTCCG-AGTGGTGAGGTCTTCTACACAGTTTGAATTTTGCGTGTGATACACAGAGCCCTCATTTCCTGA-TTTTCAAAAGGCAGGATGTGTCTTCTAATTTCCCTCGGAGGATTTAGGTAGCTGGCTG-----GGGAGAAGAGATTCACACGTTTAAA-TTTGGTGCATCGGGAG s rn2.chr12 6879756 760 + 46874691 aACAAA-------AAGAGAACAGTGTGCCT-TATATGGAGCGTTCGGGAACAGACT-----------GAGCTG------------GGCCCACAGTTGTATA-TCAGAGCTACAGGAGGCCACAGCAGATGCAGG--------ATGCTATCAGGACTGTGGCTTTCCTACGCTACACAGATGGTGGAG-GAGGTCTGCAGGAGAAAGGCCTGT--TTCCTGGCCTCC-AAAAATACTGCTCTCCGGAGCAATTGATCTCCTTTTATGTGACTTGCTCATCCGTTTCCCTT---------GCTCCTAGGG-----CTGGCAGCCCACTGGAAGGAAGTGTCTAAGCTCACAC-GTGGATCTACCATTACCAGTACCTCCTCCTGGCTCCCTGCT-----ATGTCACACAGG-CCTTCCT-----------------TTGTGGTGTACATTCAACTTCCGCTGT--GTCCCCTTA---ATAAGCTACCTCAAGTCCTTCCcagaacagaacggaacagaacagaacagaacagaacgtacacagagcagaacagaCTGTGGAGACCTTTTCCCTGTGTCCTTAGGTT----------------------------------ACCTCCCCAGG--AAAA--ATTTCAAAG--TTCAGCCAGACTCCCCCAGCGGTGACATTTT-CTATAATGCCTCT-----------CCTAA----GAGTTACTGCTCCCTTGGACGGCTCCATAGTGATAAGGTCTTCTACACATTTTG-ATTTCGAGTGTGATACCCAGAGCCCTCCTTTTCTGATTTTTCAAGAGGCAGGATGTATCTTCTGATTTCCCTCCAAGGACTTAGGTAGCTGGCTG-----GGGAGAAGAGATTCACACATTTAAA-TTTGGTGCATGGGGAG a score=36129.000000 s hg15.chr13_random 272937 269 + 414659 TCAATTCCTGAAACTCAAAGATT-GCCCCCAAAATCCAGacatggtaggtgctcagtgctatctattga--------atgaattaatGAAGCCAAACCAAGAGGCTGGGGAAGAATTAATGAATTCATTGGGTCTGTTCATGGCAGTTCTGAGG------CCCCAGATGGGACTGATGTATTTTCAAAGACATCAGTCTTTGAAAATTTGCTAAACTGTTGCTGTGGTATTCTCAAGGAGAGAGGGGCTGAGCAGACA-TGGCTGGTCTCTGAAGAAG-GGCAGTT s mm3.chr5 2514570 276 - 149719773 TCAACTCCTGAATTCCAAAGATTCGGCCTCAAAATCCAGACATGGCCTTTTGCCAGTACTGTTTGTTGAATGACTACATGAGTTAGTTGAGCCAACACAAA-TGCT-GGGAAGGATGAATAGAGCCATTGAGTCAGCCAGTGTCTGTTCCAAAGCTATGTCCCCAAGCAGAAGTGACCAACTATCAAAGAGA--------CGAGGATTTGTAGAATGGAAGCTGGAGTCTTCCCAGGGAACAAAGGATTGGGTAAGTACTGGCTGATCTCTGGGGAAATGGCAGGT s rn2.chr12 6881713 277 + 46874691 tcaACTCCTGAATCTCAAAGAGTCAGCCTCAAAATCAAGACATAGCCTTTTATCAGTACCGTCTGTTGAATGACTACATGAGTTAGTTGAGCCAACGTAAAATGCT-GGGAAGAATAAATGGAGCCATTGAGTCAGCCGATGGCTGTCCCATAGCCATGTCCCCAAGCAGAAGTGACCAACTATCAAAAAGA--------TGAGGATTTATAGAATGGAAGCTGTGGTCTTCTCGGGGAACAAGGGATTGGACAAGTACTGGCTGACCTCTGGAAAAATGGCAGGT a score=26759.000000 s hg15.chr13_random 273206 404 + 414659 TTGAAGCAGAAAGCATCAGTGGACCAGGAAAACTTCTTTGCAGAAGCCCCTGGAAATGCCATTATTCTATAAAATGAGCCCTTCCCTT--TCCTCTTCCACCCACCTCCCCTCCTTCAAGTAGAAATAACTTGCCTCATTCATTCCAGCAAGGAAACCCAAGACCTCGATCCTACAGCCTCTCCTTCCCTATGCTGCCTTCTGAATGTGTGTCCTGAGAGTTTGGTGTTTTTCCCCCTGAAAGATTTTATGTCATTGGCCAGGCCTAAAAAGCTTGAAAGAACAAAGAATATAATTCGTCTGTGGGTTTGGCCTGTCTGA-ACAACAGATTTCTCTAATCCAGGACAAAAGCTGGACTTGCCAAGGACACACA--TTTGTAATTAAAATCTGCATTTATATTTGAAAAT s mm3.chr5 2515002 340 - 149719773 TTGAAGGACGAAGACTCAGAAAAT---AAAGACTGTTATAGGGACACACCTGAAAATGCCCTGCTTTTAT--GATAAGCACGCCCTCTCAACTCCACTCGCCAGGCCCCAC----------AGGAGTAATCAACTTTAGCCAG----------------------------------------CCTTCCTATGCCTCTTTCTGAATATCTGTCCC-----CTTAGC---TATCTCC----AAGCTTTTTTATTACCATTGTAGCCTAAAAGCCTTCAAAGAACAAAGTGACTCATAGACCTGGGAGCCTAGGTGGCAAAAGCCAGGGAGCTCCCTTCATTCCACACCAAACCCAGACTTCCCAGCCACATACA--GTTTTACTTTAAATGCACACTTATCCTTAAGAAC s rn2.chr12 6882118 339 + 46874691 TTGAAGGACGAAGGCTCAGAGGGT---AAAGAC-ATCATAGGGACACACCTGAAAATGCCCCGATTTTAG--GATAAACGCGCCCTCT--GCTCCGTCCACCAGGCCCCAC----------AGGAGCAATCAACTTTAGCCA-----------------------------------------CCTTCTTAAGCCTC-TTCTGAATATCTGTCCC-----CTTAGCATTTACTTCC----AAGCATTTGTATTACCATTGAAGCCTGAAAGTCTTCCAAGAGCAAAGTGACTCATAGACGAGGGAGCTCCGGTGGCAAGA-CCGGGGAGCTCCCTTCATTCCACACGGAACCCAGACTTCCCGGCCACGTACATTTTTTTACTTTACACACGCACTTATCCTTAAGAAC a score=40667.000000 s hg15.chr13_random 273621 539 + 414659 GTATTTTTTTTCAAGTCGGC-GGACGCATCTCTTTCTCCCTGGCTCCCAGC---------TCTCGTGCCTTCGCGTTGACTTCTTTTTCAGGATCTTGGCGCACCTAAGCCTTGTGGGGCCTGGCTTTCTAAGGAGCAGCAGAGAATGCTTGGGTGAGGAGGCCTCT-----CAGCAGGCTGGAAGCGTTTCCTTTCCTATCCAGCCTCCCTCCCTGCCAGGGAATCGTCAAGCCTGAGGGAAGTGC--TCCCCCTCCTATGTTTACGAAGCACTAAATTTACGAAGTCATTAATTCCCTTCATAAAGACGGAGCCTAATGGAGTTTTCTATTAGTCATTGAGATCGCGGTTATAACCCTGAAAGATCAAGAAAGCAATCAGGAGTCTAAA----TTGAAGT----------GGGAGTCGGGGGGACAGCAAAGACGTTTCTCCTCTTTAGCTGTCAGACTTTCCTGTTTTAAAGGGAAATATTGTGAATATCTTAATCACTACCTCACAC-ATTTGTTTATTATTAT--TTTTCCTTTTCAGAACATTCAGAAATGTTGTGTAGACGCACAG s mm3.chr5 2515469 473 - 149719773 gATTTTGTTTTGTTTTCTGTTGACAGTGTCTCCCTCTCCCTGGCTCCTGGCTTTGCTGTTTCCTGTCACTTCTATTTGGTTTC-TTCTTGGGATATTTGGGCACC-AAGCATCCTGGGACCCAGCTTTTAGAGAAACAGCCC------------------------------AAGCA--------------------------AGCCTGCTTCC-----------------AGCCAGGAGGATACGCCTTTTCTCTGCCATGTTTACCAAGCACTAAATTTACAAAGTCATTAATTCTCTTCAGAAGGC-----TCTAACGGAGCTTCCTATTAGTTGGTGAAATGGTGGCTGCAACCCCA-GAGATCAAGAAAGCAATAAGGACTGCAAA----TGGCTGC----GAACCAGGGAGTGGGGGTGGGGAGCCCCTCCTCGCTCCTCTCTAGTTGTCAGGTTG--CAGTGTAAAACAGGTAT-TTGTTA-------AATCGCCGCCTTATGT-GTGTGTTTATGGAGATTATTTTGCTTTCCAGAACATTTAACAATTGTTCACAGACACATAG s rn2.chr12 6882739 512 + 46874691 CATTTTGTTTGTTTTTCTGT-GACAGTGTCTTCTTTTCC-TGGCCCCTGGCTTTGCTGTTTCCTGTCTTTCCTATTTGGTTTCCTTCTCGGGACATTTGGGCACC-AAGTATCCTGGGACCCAGCTTTTAGAAAAACTGCCCC-AGTGACCAGCCGA--CGGCCAGTATCTAAAGCAGGCTG-----GTCAACAGATCCAGCCAGCCTGCTTCC-----------------AACCTGG-GGAAATGC--TTTCTCTGCC--GTTTACCAAGCACTAAATTTACAAAGTCATTAATTCTCTTCAGAAAG---------------GCTG--TATTAGTCGGGGAGATGATGGTTGCAGGCCTG-GAGATGAAGAAAGCAGTAAGGACTCCAGAACAGCGGCTGCTGCGGAAGTGGGGAGTGGGGGCGGGGAGCCCCTCCTCGCTCCTCTCTGGCTGACAGGCTG--CAGTGTAACACAGACCT-TTGTGA-------AGGCGATGCCTTACACCTTATGTTTTTGGAGATTATTTTCCTTTCCAGAACATTTTACAATTGTTCACAGACACACAG a score=27730.000000 s hg15.chr13_random 274480 477 + 414659 AGGGAGAGCCAGGGTCAGGGTCACGGCCCCCACAAGGCCAGGCACACAGCCCTGGGGTGCTCTGGACAGGAAAACTAGAAATAGAGGACCCTGTTTTC-CCAGTGCCCAAATTACT----------CAGGCCTCCAGGGAGTCCCTTACCCCATTCGAGGCCATAGAGCTGCAGGGAGCCATCCTGCCCTGAGCC--TGCTCGTCTCTTTGCAAGCCCAGGCCAC--CCACTTTGGGCTTTGGGCGGAGAAGACAGGTGTATTTCTA--GTCAAGAGAAGTTTCCCTGCACAGAGTCCAAGGAACGGCCTCCTCTG---GGGCCTTACA--GGCCCTCCACAGCTCAACAGTGAGCCCAGCAAAGACGCCT---CTTGACTTCGGTGT-----AGCCTCATCTT-----------CCAGAGAATTCCCTGAGATGC--CACGTGGCTGTAAGAAACGCTGCTGCAGTCCAAGGAGACAGCAAGGGAAGCTGTGTTGGAGGGAAAGC-AGCAGTTTTCAAAA s mm3.chr5 2516036 429 - 149719773 AAGGAAAGCCAGGCCCAGGGTCACAACCCCCAGA--GCCAGACCTACAGCCCT-----------------AAAGCAGGATTTAAAAGCCCTTGTTTTTCCAAGGACTCAAATTACTACTTGGAATCCAGACTT----------CCTTAACCCTTTCAGGCCTAC--------------TCTAACTGCTCTAAGCCCTTGTTGGTTCTCCTCTC---TCGGCTCACCGTCCCCTCAGAC--------------ATGTGTGTCTCCCTAGTGTCTGGAGACAGCGTGCTGCTCAGGA-CTGAGACATGGCTCCCCAAGACAGAGCCCAGGAGTGACCCTACGCTGCCCACCA-------CAGCAGTGTGACCTTGACTCAAACAAAATGCTCATCAACTTCACAGT----------------------TCTGAGAGCCC-CAAAGGACTCTCAGAAATGCTGCTGTGA-CCTGTGAGAAACTCAAGAAAGCTGTGTTTGGGAGGAAGCGCGTAGTTACCAAAA s rn2.chr12 6883353 446 + 46874691 AGGGGAAGCCAGGCCCAGGGTCACAGCCTTCAGA--GCTAGGCCCATGGCCCT-----------------AAAGCTTGACTTCAAAGTCCTTGTTTTT-CAAGGACTCAAATTACTCCTTGGAATCTAGACTTCCATGGAGACCCTTAACCCTTTCTGGCCC--------------------ACTGCTCTGAGCACTTGCTGGTTATCCTATATGGTCAGCTTACAGCCCCCTCAAG-------------------------TCCTGGGGTCTGGAGACAGTGTGTTGCCTAGGG-CTGAAACGTGGCTCCTCAAGACAGAGACCAGGAGTGGCCCTAGTCTGTCCTCCA--------GGCAGTGTGACCTTGACTTAAACAAGATGTCCATCAACGTCACTGTAGACTAGTCTTCTAGAACATACTCTGAGAGCCCTCAAAGGACTCTCAGAGATGCTCCTGTGG-CCTGTGAGAAATTCAAGAAAGCTGTGTTTGAGAGGAAAAGACTAGTTGGCCAAC a score=117442.000000 s hg15.chr13_random 275792 895 + 414659 ctcaccttctctgagct---ggtttccctatctgtaaagtagaaacaatcataatgataatggagacaatgttcctgcagcgtgaatgagataacaaaagctcatgtcagacgcgtagGTGGTGCTGAAACATGT--------------------CTGCTGCTTCTCCCCTCC----------------TCCAGCGTTTCACACTGTGCACCCACACTGGGAACTTAGGGGAGTTCCTGGACCCTCAGGGGAATGATATCACAGAACCATTCTAATTGCCTAAGTCTCACAAGCAATCTGATATGCCTAGTATTTGTTC--CTGAGTCTGAGAGGAGATCGTTA--------------------------TTGTTCATCTTTTAAAGCAACAGGTCGCCCAGTCTGTTGACGATACCTCCCATCAAGACATATGCTCCACCAAGCTAGGAGCGGATGATGCCAGAGCCGCCTTGCTTCTTGGA-TTTTCTTCTGAGCCCCACCGTGCTGGGGAGACTCTGAGCATGGTAAATATTTAAGCACACGTCTTGTGTAACTGTCACAGATCCGGATGCACCGGGAGCCATCGAGCCACAAGCTGGCACCTGTCTAAGTGTCCCAGCTTCGAGAGACGGTGTTTGTGCCAACATTGGGAGTCTGTTGGCGACCAGTGGCTGATAGGTAGCAGAATTCTGTGGTCTGTTAATTGTCTTGGAAGCAAATCCTTGAATTGGGAGAAAGAGAAAGCAACTGTAATTAAAGCTTCCCTTGGGCAGAATTTCCCTGTGCAGGCAGTTGGCAcattttttgtgtgcccgttaagctccaggcactgggctaggaactttacgttcactgaagcttttaatcctggtaacagccaaagaagagactgttattgtcaccaagaaacaaaggctcagagaggttaaatggtctgctcagagttctacagctactcggt s mm3.chr5 2517680 878 - 149719773 CTCACCTTCTCAGAGACATAGATGTCCTTATCTAACA---------AATAATAATGGTGATGGAAATATTTTCATGGCAACCTTAATAAGATAACAAGAGCTTGTAGGTAGTGACTATATGGAACTGAACTGGGTGACCCCTCCCATACCCCACCCTCCCACCTACCCTCCCC-----------TCAACCCCAAGAGTTCATGTTGTG----------GTGAATGTGGGTATGCACCCAAACTCATGGGGAAACCGTATGCAGGTACTGTTCAAACTTCTCAGGTTTGGCCAGGGATCTGACACTTCTGAT-----TCCATCCAAGTCTGAACGAAGATCATTACTGTTATGTT----------------TTTTTTTTTTTTTAAAGCAACGGGCTGGCTAGTCTGTCAAGGATATGTCCCATCAAGACATATGTTCCTGCAGGCTAGTTGCAGAGGATGCCAGAGCCTCCCTGCTTCTCAGG-TTTTCTTCCCTGCCCTGCCACACCAGGGTGGCTCTGAGCAAGGTAAATATTTAATCAAGCATCTTGCATAACTATCACCGATTCAACTGTTCTGGGAGCCGTGGAGCAACAAGCTGGCACCTGCTTAAGTGGTCCGGCTCCTGGAGGCACTGTTGTTGCCAGCATGGGGAGTCTGTTGGCCACCAGTGGCTGATAGGTAGCAGAACTCTCTGGTCTGTTAATTGTCTTGGAAGCAAACCCGGGAGTAGAGAGAAAGAGAAAGGGCCTGTAATTAAAGCTTCCCTTGGGCAGAATTTTCTAGCAAGGGCAGTTGGCAA-----------------CAAGCTCTCTGAGCTGGGCCTGGGGCTTTACAGATTCTGG---------------CGACAGCCAGAGAAGAGGCTATTGTTGTCGCTCAgaaagggagtctcagagcagttaagtgattcactcc-aattccacagccacttggt s rn2.chr12 6884843 892 + 46874691 CCCACCTTCTCAGAGACATGGGCGCCCTTATCTATGA---------AAGCATAATGGTGACAGGAATACTTTTATGACAACTTTAATAGGAGAACAAAAGCTTGTAGGTAGTGACTATGTGGAACTGAGGGGTGTTACCCCTcccacccccaaacccccaccccacaccccccactccccacaccccaccccTGGAGTTCATCTTGTG----------GTAGATGTGGGTCTGTACCCAAACTCATGGGGAAACGGTAGGCAGGAACTGTTCAAACTTCTCAGGTTTGGCTAGGGATCTGACACTTCTGAT-----TCC--TGAAGTCTTAGCAAAGATCATAACTGTTATGTTGTTGGTTTTTGGTTTTTTTTTTTTTTTTTAAAGCAACGACCTGGCTTGTCTGTCAAG-ATACATCCCATCAAGACATAGGCTCCTGCAGGCTAGGAGCAGAGGATGCCAAA-CCGCCCTGCTTCTCGGGGTTTCCTTCCCTGCCCTGCCACACTAGGGCGGCTCTGAGCAAGGTAAATATTTAAGCGAGTGTCTTGCGTAACTATCACCGATCCAACCGTACTGGGAGCGGTGAAGCAGCAGGCTGGCACCTGCATAAGTGGTCCAGCTTCTAGAGGCACTGTTTCTGCCAGCATGGGGAGTCTGTTGGCCACCCGTGGCTGATAGGTAACAGAGCTCTCTGGTCTGTTAATTATCTTGGAAGCAAACCCTGGAATGGAGAGAAAGAGAAAGGGCCTGTAATTAAAGCTTCCCTTGGGCAGAATTTCCCAGCAAGGGCAGTT--------------------------------------GGCTTGGAACTTCACATCCTCTGGCTCCTCTAACCCAGACGACAGCCAGAGAAGAGGCTA---TTGTCACTCTGAGAGGGTGACTGGGAACAGTAAAGCGATTCGCTCC-AATTCTAT-GTTACTTGGT a score=21825.000000 s hg15.chr13_random 276691 265 + 414659 ---gaactagggaa-tgaagccagagttgGGAAATGTAGCTA----TGAAAAAAGAGAGTTGATATCACCATTTTAAAACCCTGATGCCCTGCCAGCAACATCGCCCAG-----AGATTGAGATCCTTGAGACCAGGGAGGAGGCTTGTGTTTGTAGGGAATGCCTTTGGGTGCCACCACTAGG-----TCAGACGCTAAACCACATCCTG-ATGCCTCATAGATGCCCATTGGGGAAATAGATTCTGTCACGTCTCAAGGTATGTATTTATTAAAACCCATGG s mm3.chr5 2518678 259 - 149719773 TCGGAACCAAGGGA-TGCAATCAGAGGCGGGAAATGCATCTGCCGTCGGACAAAGGCAAGCGGGACCACTCTCAGGTAACCCCGGAGCCCTGACAGCAGCCTTGCTCAGTACTGAGCTCAGGAC-------ACAAGGCTACAGGCATGAGCCGCTGGAGCAGGC-------TGGCACTGCAGAGATGCTTCATATGCTCGGCCTCATTCTG-GTGCTTTG--------CAGT-GGGAGTTTCTTCCTGTCTCATTTCAAGCTGTGTATTTATTAAGACCCAAGG s rn2.chr12 6885736 267 + 46874691 TCAGAACTGAGGGAGTGCAGTTGGAGTCAGGAAATGCATCTGCCTTCTGACAAAGGCAAGCCAGGCCACTCCCATGTGACCCTGGAGCCCTGTCACGGGCTTTGCTTAGATACCAGCTAGAGAC-------ACAAGGCTATGGGCATGAGCTGCTGGCGAATCC-------TGGCACCGCAAAGATATTCCACATGTTTGGCCACATCCCGAGTGTTACA--GATGCCCAGT-GGGAAGTACTTCCTGTCTTCTTTCAAATCGTGTATTTATTCAGACCCAAGG a score=5465.000000 s hg15.chr13_random 276956 63 + 414659 GAATGGAAAGACAGCAGAGAAAAAGAAAGTAGAACAACACAGGATGAAGGGGCTGTGCTGCCT s mm3.chr5 2519083 62 - 149719773 aGGAGCAAGAACCAAGAGGCAGACGAAAACAGAGCAGTGTAGGGTG-AGGGGCTCTGCTGCCT s rn2.chr12 6886149 62 + 46874691 AACATCGAGAACCCAGAGGCAGATACAGACAGAGCAGTGTAGGGTG-ATGGGGTCTACTGCGT a score=18131.000000 s hg15.chr13_random 277559 186 + 414659 GTTTAAAATAATCACAGAAGTCCCTTTCTGAGAGAGTTCAAAAACAAATGTTATGGAAATTCTGCCAGAAA-GATGTATAAGAGCTGGACTTGGGGAAGGTTTTAAGAAAGAAGGAC---------------TGGAGTGGGACCCTCACGGGTGAG----TAGGGTATAGATAGTTGGGGTGGGGCTGAGGAAAGAAGCTT---------------------------------------------------------------------------------CTGGG s mm3.chr5 2521919 201 - 149719773 GTTCAAAGCAATTACAGAAATCACTATTCAAGCAAGCTTAAGCATAAACGTTAGGGAAA-CGTAACAAAAAGGATGTATGAGAGTTGTTCTTGGAGAGGGATGTGAGGAGAAGGGGCCCGGAAGGATACAGGTGGGGTGGGA--CTCACAGGAGAACTCCTGTGGCATAG--AGGCTGGGTAGGTCTGGGATGAGAAGTGC---------------------------------------------------------------------------------CAGGG s rn2.chr12 6888039 281 + 46874691 GTTTAAAGCAGTCACAGAAATCACTAGTCAAGCAAGCTTAGACAGAAATGATAGGGAAATCGTACCAAAAA-GATGTATAAGAGTTGCCCTTGGAAACGGAGGTGAGGAGGAGGGACCCGGAAGGATGTGGGTGGGAT-GGA--CTCACAGGAGAACTTTCATGGTGCAG--AGGCTGGGTAGGTCTGGGATAAGAAGTGCCAGGGACagctttgcgcagtggcagtatcgtagccaatgaggttatccgaggcgcgattattgctaattgaaaaGAAGGGACAGGG a score=4155.000000 s hg15.chr13_random 279404 23 + 414659 CCTGCCTGGGTTTCCGGGTCCCT s mm3.chr5 2524174 23 - 149719773 cCTGGCTGGATTTTTGAGTCCCT s rn2.chr12 6890337 22 + 46874691 CCTGACTGG-TTTCTGGGTCCCT a score=17268.000000 s hg15.chr13_random 279427 128 + 414659 GCCTCCAGTTGCTTC-TGATTCCTGATGATCAAAAGACCCCACT----------GATT--TTTTTCACCTCTTTGAGTCAAACTGCCCTCTCTGCTGGATCCTTAGCAGTCACTGATGCCCGCAGTTAAAAATTCAACCTt s mm3.chr5 2525009 129 - 149719773 GTCTCCTCATGCCTCACAATTCCTGACAACCAATAGTTTCCCCTTCCCCTCCT-GAGTAATTCCTCACCCC-----------CTCCCCTCTCTGCTGGGTCCTCTGAAGTCACAGATGTCTGCAGTTAAAAATTAAACCAT s rn2.chr12 6891167 121 + 46874691 ---------TGCCTTACAATTCCTGACAGCCCATAGTTTCCCCTTCCCCTCCTTGAGTAATTTCTCACCCC-----------CTCCCCTCTTTGCTGGGTCCTCTGAAGTCACAGATGTCTGCAGTTAAAAATTAAACCAT a score=60571.000000 s hg15.chr13_random 279811 860 + 414659 TTAAAAAATCAGCCTTTCTATAGAGTTAACATTGTGCCAGGTAGGCACAACAATGAGAAATGACAAGAGGAAATGATGAGCTAAAATGCCTATTTTCTCTCACGAAGCGATGTAATACAGAAGCCTTACGTTTTCTGGTTATCTGGCCAAAAGAAATCCTGTCATTGCCCTTGGTTATCAAATAGACCTCATGTTCTTGTCAGTCAGAGAATTGTGGAAATTTGCAGCTTAAAA-ATGTAAGGTGTGGGTGAAATCAGATTAGGTTTGACTTCATTGTTCAACAGAGGTTCACAGATGGGTC-----------CCCTAATGACTAGGGTTTTGGTGTCCTTGGCCAAGGTTAAGTGACGAGTTAGGTCATCGGTCATTGCCATCCC-------TAGTGGTTAAAGCTTGGCCAGGAGCAATCCCACTTATTAAGAAAAATGCCTTGCCGAGGGGTAGAACGTTAATTT-AATTTAGGGATAGTACAATTGTATCTGCACATTCTGCATTTCACTGTTGATACAGCCT---GAGCCTGCCTGGCTGGTTGCAATTGTTTTAAATCCTCTGGCACCATTGA-TCCCTAATTGACCCCAGATTCCTGAGCGCCAGGAGCAGCCCTGACTTGTTTATTGCTGGCCCT--------------------------GGGCCACCGTGCGGGTGTCCGCTGAGTTCCGC-TGAGCTCAGCCACAAAGGCTGCTCTCTGACTGTGAGTCAGCCTAGCCCACGGCCAGCCAAGCCCATGGCCAGCAGGAGGACCTCCTCCAGCTTTCAAAAACAACAGGGCCTCCCTGTAGCTAAAATGCTTATTTTCTCTTATGAAGCGGTGTAATGCAGAAGCCTTAGTTTTCTGGTTATCTGGCCAGTAGAAATCTGGTCACCCCCTT s mm3.chr5 2525138 646 - 149719773 -----------------TCATCAAGTGAACATTGTGTCAGGCAGACACAACAATGGGAGCTGATGAGACAAG-------------------------------------------------------------------TGTCTAG-------------------------------------AGAACGAACATTCTTGTCAGTCAAAGTCTTAAGGAAGCCTGCCGCGTAAAACTGGTAAGGTACGGGCAAAATCAGACTGGGTTGGATTCAGTTGTTCATCAGAAGTTCTTTGGTACATT-----------CCCCA--------------------CTGGGTCAAG------------GGTAGGTCATCAGCCATTGGCATGCCGTCTCTACAGCGGCTCGACCTCCG------------CCTTTTGTTGACCACATGG--TTGTT-ATGGATAGAACACTGACCTCAGGGAGGGGCTGGTGTGATCTTCTCTTTGC--TTATGCTTTCATTGTGGGAAGCAGCAGAGGAGCCTGACCTACTGG-AGCAACTG-TTTAAATCCCTCAGCACCACCAACTCCTCAGCTGAGCCCTGATTCCTAAGTGCCAGGA-----CCTGGTTTGCTCAGCACTGGCCTCTACAGCTAGCTGT-------------GGTCCTCTGTGC--ACAGCCACTGAATTCTGCATTAGCTCAGCCACTAAGG--------------------------------AGCCTGCTGA------------------------CTCCAGCCTTC---AACAACAGGACAACCTTGAAGCTCGAGTGTGTCTTTTCTC-CACGAAGCTGTTTCGTACAG--TCTTTAATTTTCTGGTTACCCAGCCAATAGAAATCCAGCCACACCTTT s rn2.chr12 6891288 646 + 46874691 -----------------TCATCAAGTGAGCATTGTGTCAGGCAGACACAACAATGGGAGCTGATGAGACAAG-------------------------------------------------------------------TATCTAG-------------------------------------AGCCCTAACATTCTTGTCAGTCAG----TAGAGGAAGCCTGCTGCTTAAAACAGGTGAGGTAGAGGCAAAATCAGATTAGGTTAGAGTCAATCGTTCATCAGAAGTTCTTTGGTTCATTCCCACCGCCCCCCCCA--------------------CCGGGTCAAG------------GGTAGGTCATCAGCCATTGGCTTGCCGTCTCTATAGTGGCTTGACCTCAG------------CCTTTTGTTGACCACAAGGTTTTGTT-ATGGGTAG------------AGGGAGGGGCCAGTGTAGTCTTCTGTTTGC--TGTGTTTTCCACTGTGGGAACTAGCC---AAGCCTGACCTACTGG-AACAACGG-TTTAACTCCTTGGGCACCACCAACTCCCTAGCTGAGCCCAGATTCCTAAGTGCCAGGA-----CCTGGTTTGCTCAGAACTGGTTTCTACAGCTAACGATGGGCCTCGATGACGGTCCTCGATGC--ACAGTCACTGAATTCTGCGTTAGCTCAGCCACCAAAG--------------------------------AGCCTGCTGA------------------------CTCCAGCCTTC---AACAATCGGCCAACCTTGAAGCTAAAGTGTGTCTTTTCTC-CATGAAGTTGTTTCACAC---------AATTTTCTGGTTGCCTGGCCAGTAGAAATCCAGCCACACCTTT a score=126817.000000 s hg15.chr13_random 280884 1041 + 414659 CATCTTTATGTAGAGAGAAAAGTGAG-TTAGTGCTTTGAGAAATCAGCTGTGCACACAAAGAGCAAACCAGGACCCTCTCTGGTCCCAGCTGGTTCTGTTAGAGTGAGCTGGGGTTCTGCGAAACCACATTTGGTATGGGAATGCAAGCTGCAATTTGGTCAAAGGTACATT---GACAGCCTGAAGGAGACTGCATTT-AAGCCCTACACTAAAACAATGGGGAGCCT-GAGTCCAAT-ATTTACTGGGTG-TTCCAATAAAGATCTAGAGCACAAAGGCTCTC-TGGGGACCTCCATCACAAATAGCGCAGCACACATTCATCTGGCCACATTGGCACTTGTTAGCTCTCAGGCAGATTCAGATGGGGGGTTGGGGGGCGTGTTCCCTCCAAGAATC----------CTGCTGGCCT-ACCTTGAAAATCAAAACT-----GCATGGTCAGATGCAGACAGGAGGAATGTTGCTAAG---CTTCGGAAAC-CACTTAAATACTTTGAACAGAATGGCTCCTCAATTGAGGACAAAAGTATACTTTTCTCTTAAACTGCAAACCTGGAATGTGCCTTCT---GATGATTATAGGCAGAGTCCACACTCAAGTGATGGGAACCAGGCCCATGCTCTGCATATGGTGTCCAGGCTGCAGGGCAGCTGTGCCTTAATGAGATCCAGAAGCCTGCT--GGCTCCCCAGCAGGCCCTCGGGAGCGAGGGCGTCCAGCACGGGTCCCAAGGGCTCCCCACCCT-TCTTGGAGGCTTGGCA---------CCCCGCCTGC--------------------CTGACCCCAGGGTTCTGCACATATGCACCGGAGGCAGCCTGGTCCCCCATACACGGATGCTTTAGTTGGATGACCGGAAAGGGGTGTGGTATGGGGGTCAGAGCATCTGAACAGACAGAGCTTTTCCCAGGGCCTCCTCCTTGGCTCAAACCATGACCTGCCTGCATCCAGATCTCCTCTCGCTCTCATTATCACACCAACTGCCTCTGCAAAATGCAGATACACTTTGCTGTTTTTGCACTTGGTAGAAATGACATCTTTTTTTTGAAACATAATAAAGCCCAGTGATAA s mm3.chr5 2530212 978 - 149719773 CATCTTGATGTACAGAG---AGTGGGGTACATACATTGAGAAATGACCCCTGTATCCAAGAAGTAGCCCCCA--TTTCTCCAGCCCAGACTAGCTCCAT--AAGTAGGCT-GGGTTTGGGAAAGCCATGCTTGTTGTGGGACTGCAAGCAGAAGTGTGGTCCAAGAAGCCTTCTCCACAGCCTGGAGAAG---GCATTTAAAGCCTAACACTAAAACAGCAGGAGGCCTCGAGGCCAGCAATTTATTGGGTGTTTCCAGGAAAGACACAGAGTCCCAGGACTCCC-TGGGGACCTTCACCACAAATACTCCAGCACACATTCATCTGGCTGCGTTTGCACTTTTCAGCTCTCAGGCAGATCCTGGCTGGGGGGAGGGGCGCACATGCCCTCCCGCATCCTGCAAGCCTGCTGCCTGCCT-GCCTCTGAAATCAAAGCTACAGAGCACAGCCAGATGCAGACAGAAGGAGGAGCGCTGAGAGACCTCAGAACTGTGTTCCTCAGCTCTGAACTGAGC-GCACCGCAGCTGCAGGCAAAAGTATGCTTTTCTCTTAAACCACGGGCCAGGAATGTGCCCTCTGACGATGATTGCGGGTCAAATCAACAGTCAAGTGATAGAAACCAGACCCGTGC---------CGAGGCCAGGC------GCAGCGG-----TAATGAGATCCAGAGTCCTTGCAGGGCTCTCTGGCAGGCCCCAGGGGAAGTGG--AGCAGGCAGTGTTCTGAAGGGCTCCCCGCCCCAGTCTGGAGGTTTAGCA-------------GCCCCC------------CACTTCATCTGACCCTAGGGCTCCGTAGCTATGCACCAGTGTCAGGCTGATCCTC---AGACGGGAACCTTGCTTGTGTGAAAGATAGGGA------------------------TAGATCGACGAAGCTTTTCCCAGGGCCTCTTTCCCAGGCCAAAGCACAACCTACCTCCTT----------------TCTCACCATCCCACGGTCCGCATCCACAGAACGCAGATCGGCTTTATTCCCTCTGCGCTTGGTAA-----------------------ATGCTGAAGCCCCCTAACAG s rn2.chr12 6892753 987 + 46874691 CACCTTGATGTACAGAG---AGTGGG-CACATACACTGAGCAATGACCCCTGTATCCAAGAAGTAGTCCCCA--TCCCTCCAGCCTAAACTAGCTCCA----AGTAGGCT-GGGTTTGGGAAAGCCATGTTTGCTGTGGGACTGCAAGCAGA-GTGTGGTCCAAGAAGCCTTCTCCACAGCCTGGAGAAG---GCATTTAAAGCCCAACACTAAAACAGCAGGAGGCCTCGAGGCCAGCAATTTATTGGGTGCTTCCAGTAAAGACACAGAGTCCTAGGACTCCCAGGGGGGCCTCCACCACAAATACCCCAGCACACATTCATCTGGCTGCGTTTGCACTTTTCAGCTCTCAGGCAGATCCTGACTGGGGGGAGGGGCGCACATGCCCGCCCGCATCCTGC-------CTGCTCGCCTCGCCTTTGAAATCAAAGCTACAGAGCCCAGCCAGATGCAGACAGAAGGAGGAGCGCTGAGAG-CCTCGGAACTGTACTCCGCAGCTCTGAACAGAGC-GCGCTGCAGCTGCAGGCAAAAGTATGCTTTTCTCTTAAACCACGGGCCAGGAATGTGCCCTCTGGTGATGATTGCGGGTCAAATCAACAGTCAAGTGATAGAAACCAGACCCGTG----------CGAGACCAGGC------GCAGCTG-----TAATGAGATCCAGAGTCCTTGCAGGGCTCTCTGGCAGGCCTCAGGGGAAGCAG--AGCAGGCACTCTTCTGAAGGGCTCCCTGCCTCAGCCTGGAGGTTTAGCATTCCCTTCCCTCCGCCCCCCCACCTCCCACACACATCATCTGACCCTAGGGCTCCATAACTATGCACCAGAGTCAGCCTGATCCTC---ATACTTGAGCCTTGCTTGTGTGAAGGATAAGGG------------------------TAGATCGTCGAAGCTTTTCCCAGGGCCTCTTTCCCAGCCGAAACCACAGGCTACCTCCTT----------------TCCCACCCTCCCACGCTCCACATCCACAG--TGGGGATCGGCTTTATT--CTCTGTGCTTGGTAA-----------------------ATGCTGGCG-CCCCTAACAG a score=22752.000000 s hg15.chr13_random 282267 407 + 414659 CATAACATCAGATGGGTGTAAATAAGGGGGGTTGATTTCTGCTCTCTGCAGCAGATTTACCTGGTCATTCAATCCATCCGTTGTAACACAAGCCCACACCTTTTTTGAGCCTGAATTTTTTGGGTCCTACTTAGGAAGTTATTATATTTGCTAAGGCCCTGAAGTGTGCATGGAAACATGCAAAGCATGCACAGCCACTCTCCACCTGCTGCCAGGGCCGTGTTGGTGAGATGAAGCTCTGATGAGATGCCACTGCTAAGGAGATTTCAGCATTATGGAGCTCAGATTTTAAATGCCAGCAGATCATTGTCACTAACCGGTAGTCCCCAAAGCATAGAGCAGCAGTGAAAGAGGG-TACATGTGGCCCAGGTGATGATATTA-GCCTATTGTGGAGGTGACGGCTAGAA s mm3.chr5 2531190 259 - 149719773 CATAACGTCGGATGG------------------------------------------------------------------------------------------------------TTTGGGTTTCTGTTTAGGAATGCACAATATTTACTAAGAAATTG---------------AATATAGAGCA-----------------------------ACCCCCTTGGTGAGAAGGAATTCCGATGAGGCACAGTTGCTAACAGCAGTTTGGCCATAAGGAGTGCAGATTTTAGAGGCCAGTGGGCTATTCGCACTAGGCAGCTGTCTTTAAAGTGGAGGGCAGCAGTTAAGGGGGGGTGCATGATACCCAGGTGGTGGCGTTC---CCCCTGT-GAGGTGAATGGGAGAA s rn2.chr12 6893740 241 + 46874691 CATAACGTCAGATGG------------------------------------------------------------------------------------------------------TTTTGGCTTCTGTTTATGAATGCACAATATTTACTAAGAGCTTA---------------CATATAGAGCA-----------------------------ACCCCGTTGGTGAGGAGGAATTCTGAGGAGGCACAGTTACTAACAGCAGTTGAGCCATAAGGAGTGCAGATTTTAGGGGTCAGCG---------------------GCCTTTAAAGTGGAGGGCAGCAGTTAAGGGGGGATCCATGATACCCAAGTGGTGCCATTCGGTCCCATGT-GAGGTGAATGGGAGAA a score=20436.000000 s hg15.chr13_random 282710 108 + 414659 GCATGGGCCTGGTTCCCATGCTCTGGAATGTGGATTCTGCCTATAATCAT---CAGAGGGCACATTCCAGGTTCTTGGTTGACAAGAAAAGTATATTTTTGTCTGCAATTG s mm3.chr5 147188942 110 + 149719773 GCACGGGTCTGGTTTCTAT-CACTTGACTGTTGATTTGACCCGCAATCATCGTCAGAGGGCACATTCCTGGCCCGTGGTTTAAGAGAAAAGCATACTTTTGCCTGCAGCTG s rn2.chr12 39981330 109 - 46874691 -CACGGGTCTGGTTTCTAT-CACTTGACTGTTGATTTGACCCGCAATCATCACCAGAGGGCACATTCCTGGCCCGTGGTTTAAGAGAAAAGCATACTTTTGCCTGCAGCTG a score=23762.000000 s hg15.chr13_random 282972 314 + 414659 ACCAGACCCAGCTGCTCCCTGAATGCACAACTGTATTTTCCAGCCC----------------TGTGTCCCCCA-----GCACCATTATCACAGCCATTGGTCCCAGGG-ATGGAGCGTTCTTGG-GTGG-AGGGGACCTGCTCATCACATCCTTGCTTTGGCGTCACTGTCAAATGGGAACACTCTCAGCACAGGACTTGCTTCATGGAGGCCCTGACACAACTAGGGCATCAAGGAGCTGCAATTCCTGAATAAGAAA-------------GAAATGCGCCTTCCCACAACTTCAGCACAATCAAGGGAGACATCAGCTACAGAGGAGGAC---AAGAAGATACTGATTTTCC s mm3.chr5 2532209 337 - 149719773 aCTAAGCCTACCTGTACACTAAAGACACAGATATATTTTGAAGCCTGTCTACACACACCTGTCCCTCGCCCCATGCATGCACCATAGAAAAAGCCACTGATCCTGAGGGACTAAGGTGTCTTGACTTGGTTGGAGACTCTTCTGTCATTCCCCTTGCTCATCGTCATCCTCAATGGTGTGACCTCTGCACACAGGG---------AGGCAACCTTATCATGATCAAGAAGTTGAAGAATTGCAATTCATGAGCATGAAAAAAATAAAA----ATAAAAAGCCACCCCAGAGTTGCAGCCCA---AAAGGACACATC-GCCACGGAGGGAGAAGGGAGGAAGGTCCTGACTCCTC s rn2.chr12 6895269 323 + 46874691 aCTAAGCCTACCTGTACATTAAAACCCC---------------CTCCCCAACACACACA---CACATGCCCCAAGTATTCACCATAGAAAGGACCACGGATCCCGAGG--------TGTCTTGA-GTGGTTGGGGACCTTTCTGTCATTTCCCTTGCTCAGTGTCATCCTCGGTGTTGTGACCTCTGTACACAGGGCTTACTTCTAGGCAACCTTGTCATGACCAAGAAGTCAAAGAATTGCAATTCATAAGCATGGAAAAAGAAAGAGGCAAAAAAAGGCTTCCTCACAGTTGCAGCCCA---AAAGGATACATC-CTCATGGAGGGAGAAGGGAGGAAAGTCCTGGCTCCTC a score=11257.000000 s hg15.chr13_random 283449 107 + 414659 GGCATCTCACAAACA--------GGTCAG-CAGCCCCAATCTTGTCCTCACAAATAGAATTCCTGTGTACTCCTCTCTGCCTTCTGGCTTCACCCACAGGGAGTGCATTCCAGAAT s mm3.chr5 2532748 104 - 149719773 GATACCTCAGAGACA--------CGTCAGACATCACCGTTGT--TCCTCCCAGAGACAA-CCCTGTGTGCTGTTCCCTGCACCCTGGATTTACATAAAAAAA-TACACTATAGAGT s rn2.chr12 6895726 112 + 46874691 GATACCTCGAAGACAACCTTGGACCTCAGACATCGCCATTGC--TCCTCACGGAGAGAA-TCCTGTGTGCTGTTCCCTGCCCCCTGGATTTACATACACAGA-TACATTATAGAGT a score=56489.000000 s hg15.chr13_random 283556 656 + 414659 AGACTAGAATGGTCCAGAAGTTTCTGAGAATTCTAGAATGCCTGT----ACCCTCCTACTGGGAAACCCAGCTTTCTGCAGCAGGACTCTTGCAGATTTCAGAA-TCCCCCACCTACAGGTTCTTCCCCTACATGAACTGCACCGGGGTTCAGAAATGGGGTGTACTTTCCCCACACTGGGTGTCTCTGTTACCTCACTGCCCAAATTCTCCTGCTGCTTAGAATTTTCTCTC-CTGTACCTCCTTTTCCTCCAATTTTCAATCACAGTCCACAGTGGATGTGTAAGAGGCACACCAGGGAGTCTTGTAAGCAACTGGTGAC-----AAAGTCAGGCTTCCCTGGCCTCCCACGGCAGATATATGCTCCTCCTCTGGGCCCTTGGCATTCGATGTAAAAGCTTGATA-CAGCTTTTACTACATGACATTGCAACTGTTGGAAGCCCCTTCTCTAGAAAGTACTaactatcatttattgagcacttcctatgtgaaagtgttcaacgtgcattatttacaatcctgtgagataggtgttccttgtcccttgcaacaggtaaagaagagactgaggctcaaaaaatttaagttaacatcaagatgccacagcctagtagagaaatcaagctttggctgggcaggcct---ggcaccaaagccaggattgcctc s mm3.chr5 2532852 578 - 149719773 AGATCAAAATAGTCTGGAACTTCCTGAGCATTCAGGAGTGCCTATATAGATCTTCCTATTAGGCTGCCCAGCTATCTCCTCAGAGACACTTCCAGGCTTCGGAAACCTCCCA---------TCTCTTTCTCTGTGAACCAGACTAGAGTTTGCAAGCCAGGTTT--TATACCTAT---GGCTGGCTCTGTT-----------TGGGTTCACCTGATAATCACTAGAGTCTCACTCTGTCATGTGTCTTCCTTCAGTGTTCATTCGTGGCCCACAGCAGATGGA--GGAGGCATGCCA----------TCCCTACCTGGACACTGTCATAAGTC---CTCTCCTGGCTCGCTG-----------------TCCTTCAGAACATCACCATTGGCTATAAAAGCACAGTGAGAGCTTTTAACA-ATTGTGTCACTACTCTTGAGATGCCCACCCAGAGAAAA---TAACTAGCATCGACTGAGCACTTCCTATGCGAAAGAATT-----TATATTCTTTTCAATCCCAAAAGACAGGAATTTATTTT-CCCTGTCATGGGCAAGGAAA-----------CAACGTATGTA---------------TCCTCAGCCAATCACAGGAATCAAGGCTCGGATGGCCAAGCCTGAAGACATCTGTCCTAGGGTTGCCCC s rn2.chr12 6895951 575 + 46874691 aaaTGAAAATAGTCCAGAACTTCCTGAGGACTCAGGGGTGGCTACATAGATCTTCCTATTAGGCTGTCCAGCTGTCTCCTCCAAGACACTTC-AGGCTTCGGAA-CCTCCCG---------TCTCTTTCTCCCCGAATTGGATTAGAGTTCACAAACTAGACTT--TGTATCTAC---GGCTGGCTCTGCT-----------CAGGGTCACCTGATAGTCGGTAGATTCTCGCTCTGCCATGCCTTTTCCTTCAGTGTTCATTCACGACCCACAGCAGATGGG--ATAGGCACACCA----------TCCCTACCTGGGAACTTTCACAAGTC---CTCTCCTGGCTAACCG-----------------TCCTCTGGGACCTCAGCATTGGCTATAAAAGCACAGTG-GAGCTTTGAACA-GTTACATCACTGCTGTCGAAATGCTCGCCCAGAGACAA---TAACTAGCATCGATCAAACCCTTCCTATGCGAAAGGATT-----TATACTCTTTTCCATCCCATAAGACAGGCGCTTATTTTTCCCTGTAATAGGCAAGGAAA-----------CAATGTATGTA---------------TCCTCAGTCAACCACAGGG-TCAAGGCTGGGCTGGCCAAGCCTGAAGGTATCTGTCCTAGGTTTGCTTC a score=11212.000000 s hg15.chr13_random 284938 67 + 414659 TCTTCCTGC-ATGAAACTCCCTCAGCACTTGGGTTCTGTAGTGCTCACTCAACACTTAATAAATACTG s mm3.chr9 37070668 67 + 124467299 TCTTCCTTT-CTGGAATTCCCTCAACACACGGAATCTGTGGCACTCATTCAGTAATTAATTAATTTTG s rn2.chr8 37494068 68 + 127756414 TCTTCCTTTTCTGGAATTCCCTCAACACGCGGAATCTGTGGCTCTCATTTAGTAATTAATTAATTTTG a score=15580.000000 s hg15.chr13_random 289841 122 + 414659 GACCTCCCAGGAAGAACATGACCTCAGCTCAGATGCCATGGCAGATGCTGAAGACAGAGCAGCTGGAGGCTGTTGGCCAACTGCATTCTTCAACGCTGAGCAG-CAAGTTCTTTCTTGAAAGG s mm3.chr8 91624395 120 + 128923138 GACTGCCTGTGCAGACCATGGCATTGGCT-GGAGACTGAGGTGAACTCTGAGGACC-AATAGCCAGAGGCTGTTGGGTAACTGCTTCCCCTGAAGCTAAACAG-CAAGTTCTGTTTTGAAAGG s rn2.chr19 23202674 121 + 58130210 GACTGCCTGTGCAAAACAAGGTCTTGGCT-GGAGgctgaggtgaactctgaggacc-aatagccagagactgctgagtaactgctttccctgaagctaaatgggcactctcccttttgaaagg a score=155.000000 s hg15.chr13_random 289963 10 + 414659 AGACCCAAAT s mm3.chr16 49591672 10 + 98986639 GACACCGAGT s rn2.chr11 35193487 10 + 88445885 GACGCACAGT a score=7238.000000 s hg15.chr13_random 299131 58 + 414659 TTTCTTGTGAGTGTGTGTGTGTGTGT---------------TGGGGTGGAACTACTAACAGCAGCTCCATTTC- s mm3.chrX 76849278 60 - 149996094 TTTCCTGTGTGTGTGTGTGTTTGTGTGT-------------TGGGGTGGGGGTTGTTACAGTGGCTCCATTTC- s rn2.chrX 77325253 74 + 133900917 TTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGGGAGTTTTTACCATGGCCCCATTTTC a score=4201.000000 s hg15.chr13_random 299440 99 + 414659 GTATGTGCTTCCCAGGTTTGCATCATGTCTAAGCTGCTGGTACCTAGGCAGAAGAA--------------------------------------------------------------GTTG-------GAGGCTCTCTGCCTGCTACTCATAAGAAATGCGTCTGTG s mm3.chr5 2618429 82 - 149719773 GCATGGTTTTTCCAGGTTTGCCTCAGGACAAAGCTGTTGGTCCCTTGGCAGGAGAAAGC-----------------------------------------------------------CTTA----------GCTTCTTGACAGCTG-----------------TGTG s rn2.chr12 6943214 150 + 46874691 GCATT-TTTTTTCAGGTTTGCCTCAGGACAAAGCTGATGATCCCTTGGCAGGAGAAAGCAGAGGtttctttttttttttctttttctttttttcggagctggggaccgaacctagggccttgcaaagcagaggttTCTTGACAGCTG-----------------TACT a score=10563.000000 s hg15.chr13_random 299688 89 + 414659 GGGAAACCAAGT----TTTGATAGTTCTGGTCCAGGTTTCTTAGAATCATGTATTTTAAACTCGTTCTGTTTTTCCAAATCTGCATTCTGCTG s mm3.chr5 2618511 76 - 149719773 GGGAAAGCAACTGGTCTGTGATGACTCAGGACTGGGTTTCTTGGTTTC-----------------TCGGCCCTCCCAGATCTGCATCCTGCTG s rn2.chr12 6943364 76 + 46874691 GAGAAAGCAACTGGTCTATGATGACTCAGGACTGGGTTTCTGGGTTTC-----------------TCTGTCCTCTCAAATCTGCATCCTGCTG a score=69661.000000 s hg15.chr13_random 300807 813 + 414659 AACAGAGAGCTCTGAAGCTTCCCA-CAGTTCAGCTCTGAATTGAGAGGGAGCTGGAGAGAGTGAGCTCAAACTTCGTAGCTGGGTTCAGCCCCAACTGCACAGGCAG-GGAGGGGGCACAAGGTCCCCTGTCCACCGATGCTCCTCAGTTTTATTGATGGGTGTCAGGGGAGAGGCCAGAGGGGAGATCCTTCC-AGAGCTGAATAAGTGCTAGCCACCTGCCC-ACCCAT-------------AC----AGCTACCTTTGCAGAGACTGCAGGCATTGCTGCAGGCTGACCTGTCCATCactgtagctgttttgtttcctgctctatccgcctgtacccagaatactatctgggccagagcagggtctctgtacatgtatgcgggttgaataatggaatCCTTGCCAATTTACAGGGCCAAGGGAGCCCTGT----GTGAAATCATAATGGCTCAAGAAAATGGTGGCCTAAATAAGCCATTTGTTCCCTCTCTGAGCTACAACTTTGTTGTGTGTAATTTAGTATAAAAATGTTTGGGTCAGAAAGCCACAAAGTGTAGTT-CTTGTAG-AAAACATACTTGGAGTGTGTGAAGCTGAGCCTTTCTGGTGCAGAGG--CTGAGGGGGAGGCTTGCTCTGTGCCCAGAAGGCTACATCACCAGCATCTGTCCACACTCAAGATGGGGGAAAATAGAATATCCCAAAGTGATTAAATA----CTCAAAGTTCCAAAAACGTGACAGCATGTCAATGTTCAGTAATCACCATAAAGCTACAGCAGCTGCCCTTAGTAATTACTCTTTTTTTCTCTATCTTAATAAA-TATAAAACACAAAGCCACTGG s mm3.chr5 2619109 704 - 149719773 AACCAGGAGCCTTGCCACTTCCCCCTGATCTGTTTCTGAAATGAGAGGACAATGGTGAAAGTGAATTTGAACTTCCT-GTTAAAGCCGGTTCCAACTGCACTGGCAGGGGCGAGGGCAT--GGCCCACTGTGCACCGATGCCAGTCAGATACAGTGCGGGGTACAGAGGAGCAGGAGAGAGGGGAGCTCCTACC-AGGGCTGAGCAAGCACTA--TCCCTGCCCTGCCCAG-------------ACTAGGGGTTTCC---------ACTGCTACCGTTCCTGGAGGACAGCCT---------------TGCTTAGCATCCCA--CCATCAG------------------------------------------------------------------------------TTCACAGAGCCAAGAGAGCCCTGCATGAGAGAGACAGCGGTGGCTTGAGGAACTGGTGACTTAAGGAAGCCACTTGTTCCCTCTCGGGCTTGCAAGCTGATTAAGTGTGATGTAGCATGAAAAGGGTTGGGTCTGAGCACTCCACACTGTTGCTGCATAGAGAAAAACATGCTTATGGTGTGCCAAACCTGGTCTCTCTGATTTGGGAGACCAAAGGGGAAGCCTTGCTCTGTGCCCAGTCAAAGAAATC-CTAGCATC--TCCACAGTCAAGAT------CACCATAGCATCCCAAGGTGGCTGCGTA-----TCCAAATCCC--AAGTGTAACAGTACAG-AGTCGTGAGAAATTACCAGGAAGCCATGGATGCTGCCCTGAGTAATGACTCCCCAATTTTT---CTTAATAAATTGGAAAACACAAAGCCACTGG s rn2.chr12 6944211 763 + 46874691 AACCAGGAGCCTTGCCGCTTCCCC-TGATGCGTTTCTGAACTGAGAGAAGAATGGTGGAAGTGAATT-GAACTTCCT-GTTACGGCCGGTTCCAACCGCACCGGCAGAGGAGAGGGCA---------CTGAGCACCAATGCCAATCAGGTACTGTCCGGGGTACAAAGCAATGGATTAGAGGGGAGCTCCTACCCAGGGCTG-------------TCCCTGCCCTTCACAGCTGTCCTCATGAGACTGGGGGTT-CC---------TCTGCCACCGTTCCTGGAGGGCAGCCT---------------TGCCTAGTGTCTCG--CCATCAG---GGCCTCTGGACACCACCTGGTGCCAAGCTAGGTGTCTGCAGGTGTGTGCAGCTT--ACTCTG----CCCCGTCAACTCACAGAACCAAGAGAGCAACGCAGGAGAGAGACAGCGGCGACTTGAGGAACTGGTGGCTTAGGGAAGCCACTTGTTCCCTCTAGGGCTTGCAAGCTGATT----GTGAGGTAGCACAAAGACGGTTGGGTCTGACCGCTCCACACTGTTGTTGCACACAGAAAAACATGCTTACGGTGTGCCAAGCCTGGTCTCTCTGATTTGGGAGGCCCAAGGGGAAGCCTTGCTCTGTGCCCAACCAGAGAAATC-CTAGCATC--TTCACGGTCAAGAT------CACCACAGCATCCCAAGGTGGCTGGCTCAGTGTTCCAAATCCC--AAGTGCGGTAGTATGT-AGTCATGAGCAATTACCAGGAAGCCATGGCTGCTGCT----GTAATGATTCCCGATTTTCC---CCTACTAAACTGGAAAGCACAAGGCCACTGG a score=49380.000000 s hg15.chr13_random 307438 546 + 414659 AACAAAAAAGAAAACCCAAAGCATTTAAGGTTGTTTTCCCTAAAACACTGCACTAATAAATAATAACATTTTTGAAATGTTATTTGAGTAGGAATATGTTCATACACAGCACAGGATTTCAGAAAATGTCAC---CATTATCCCAAAAAAGACAATAAAATGTGACTCACATCCATGGTTTTCTTGAATTGTAAGCTCTTTTGTTTATGGATAGCATCCATTATGAGCTCTGTCTGTAAAGAGATCATAAACACTCTTAATAAAAACACAAATCATTATTAATAAAAACAG-AAATCATTATCAATACCAGCTTATCTTGAGGGTTAAGTGTTCAAAatgattacccacatt------tcacaatcttcagagaaaagag---------------------------------accaaaca-----------atttgcctaagctc----------ttattc---ctagctaataacggggcccatctttgaacttgtgcaggcaaacaccaaagcctgaactctC-AGACAC-AGTGGAGACTCACTGATCACCTTAGAGCAGTCTCTTCAGTAAAATCTGGAATCAAGGAACTTTGGTTTCAAAAAGGAATTT s mm3.chr18 12829727 564 - 91041441 AACAGGAAGGAGAGCCAAG------------TGTTTCCCTT--AACATCACACCAATA---GCTGACAAAGTAGGAACTTCCCTTGAGCAGGGACACACTCATGCA-----CAGAATCTCAGTTGATGTCAC---TACTATGACAGCAGGAGC----AGGCGTGACTCACATCCATGGCTTTCTTGAACTGTGCGTTCCTTTGCTTGTGGGCAGCATCCATTATTGTTTCTGTCTGTA--------------------AAAGAGAACACAGGGCACTGTCAATAAAAACCGTAAGTTACT-TTAAGCGCAGCTTGTCTTGAGGGCTACGCCTTCGCTGTGGGttttcctgtttagtcctcacagcacccagaagccaagtgtgctgtttatcattcccaccttacaaatgaggacagaacagtacagagGCTCACAGCCTAATGACTGTGACTCGGCCATGTTCCCCTGCTAATGACTCTACTTGTCATTTAACCTGGGCATTCACGCGGCCGGCCCTGAACACTCAAGACATGACCAGGAACTCACTGGTCACCATGGAGGGCTTTCCTCTGT-GACTCTAGAACCAAAGAACTTTGGTTTCAGGAAGGTATTT s rn2.chr18 11743835 530 + 82509072 AACAGGAGGGAGAGCCAAG------------TGTTTTCCTT--AATGCTGTCCCGATA---GATGACATAGTCGAAACGCCACTTGAGTAGGGACATACTCATGCATACCACAGACTCTCAGATAATGTGACAATTACAATGACAGCAGCGGC----AGGCGTAACTTACGTCCATGGCTTTCTTGAACTGCGAGTTCCTCTGTTTGTGGGCAGCATCCATGATGGTTTCTGTCTGTA--------------------AATGAGAACACA-GGCACTGTCGATAAAAACCGTAACTTACTGCTAACAGCAG-------------------CTTCAATGTGGGTTTTTCAGCTTAGTCCTCACAGCACTCGGAAGCCAGATGTGCCATTTATTAACCCCACCTCCCAAGT----ACAGAACAGAGCTAAA---CTCTGCCTGAGAAC----------CCATAG---CCAGCCAATGA--CGGCTAGTCATTTAACCTGGGCACTCACACGGCAGGCCCTGAATACTCAAGACCTGACCAGGAACTTGCTGGTCACCACGG-GTGCTTTCCTCTGT-GAACCTAGAATCAAAGAACTTTGATTTCAAGAGGGAATTT a score=10939.000000 s hg15.chr13_random 315898 158 + 414659 CTTTGGCTTCAAAATGAATTCACTGGGAAGATAGCCATTAGTGCAAAGTATGCTTTTCTCTCAGGAAAATCACCCTACAGATCATCA---------TCA--------TTTT---------------------AAGTTTTTCCTTTCCAGTGACCCCTTCTAGGAGTTTTCATTCTTCAAACAA---ATCATCAATTTGC s mm3.chr5 2465535 188 - 149719773 CTCCTGCTTCAAAATGAAATCCTGGGGAAGACAGCCACCAATGCAAATGCCAGTCCCCACCCAGGAAAATCACCC-ATGCATTGTCAAGCAACATAGAA--------TTCTGGTCACTGGGTCTTGGCATAGGAGTAtt--ctttttgtttttcctttttcttttcttttgtttttttAACAAATCATCATTAATTTGA s rn2.chr12 6846140 175 + 46874691 AGCCAGCCTCAAAATGAAATCCCGGGGAAGACACCCACGCATGCAAATGGAAGTCCCCACCCAGG-AAATCACCG-ACACATTGTCAAACGACTTTCAATTCTCCCTTTCTGGAGACTGGTTCTTGCCACGGAAGT-------------------TTTTTGTCTTGTTTTGTTTTTTTAACAA---ATCGTTAATTTGA a score=1254.000000 s hg15.chr13_random 316056 35 + 414659 TGGGAACATAATCATAACAAAAGCTAAAAGTTTCT s mm3.chr5 2465723 29 - 149719773 TGGAAACATAAG------AAATGCTAAGAGGTTCT a score=5650.000000 s hg15.chr13_random 316674 66 + 414659 CACCTGACCTACTTAGGTATCTGTGTGACTAGTTTGGAAACTGCTCAGTATCAGGAGATAGGTAAG s mm3.chr5 2465756 64 - 149719773 CATCTTGTCTTCTGAGACGTC--TGTGACCAGCTCAGATACTGCCAGGCATCAGGAGAAGGCTGAG s rn2.chr12 6846732 49 + 46874691 CACCTTGTCTTCTGAGACATCTGTGTGACCAGCTCAGATGCCGCCAGGG----------------- a score=25611.000000 s hg15.chr13_random 316776 275 + 414659 CAACATCTTCATCCATCCAGGTGGTCCTTTCCCTAGTCATTCAACTGCATGAGAACTTTTTTTGGTAATGTCTGTGTTACTTTGTAGACAACTAAAAATCCGGCCTGATAACCATATGTCCCAGGCAACCCATGCCTCTAATGAAAATACAATGTTTCTCAGAAGGGGAAATTAGAATTAAATATAAACTATAAACCTTCAGCTTTTTCTTCCTTCTCCCATGTTTGGTCTAAACTAAGTTCATTTAGAGTCATTGAGGCCAAGAAAGGTATTTG s mm3.chr5 2466383 251 - 149719773 CGGCGCCTCCATCT-TCCAGGTAATCGCCTCTGCAGCGCTTTCATGGCATGAGAACACTGCTTTATACCGTCCATGTTACTTTAAAGACAACTAGAAATCTGACCTGGTAGCTCTATCTCCCAGGCAACCCACCCTGC--AGGGAAAAAAATCACATCTCAGAAGAGCAGATTCAGGCCAATTACAAAACCAAGGC----------TTCTTTTGTTGTTCGTGTGTGTTC-----------TACTTATAACCAGTGAAGCCGACATAGGTGTGTG s rn2.chr12 6847902 233 + 46874691 TGGCACC-------------GTGATC---TCTGCAGCGTGTGCATTGCATGAGAACACTGCTTTAGACTGTCCCTGTTACTTTAAAGACAGCTAAAAATCTGACCTGGCAACTGTATCTCCCAGGCAACCCATCCATC--AGGAAAAAA---CGAGTCTCAGAAGAACAAATTCGAACCAAATACAAAACCAAGTC----------TTCTTTCGTTGCTCTTGTGTGTTC-----------CGTTCATAACCTTTAAGGCCGACATAGCTGTCTG a score=5807.000000 s hg15.chr13_random 319416 93 + 414659 AAAGT-GGTCTGAGGCAGCCCTAACTCAGAACTTTAGGAA---------GACAGCTCTACACAATTCTCCCTTTTCCAGATCTAGGTATCCTGCTTGTTTTTT s mm3.chr5 2619829 75 - 149719773 AAAGTCAGCCTGAAACATTCCAGG--CAGAACTTTAAGGT---------GACAGCCCTACACAGATCT-----------------GTGTCCTGCTTAGTTCTT s rn2.chr12 6944994 83 + 46874691 AAAGTCAGTCTGAAACACCTCAAA--CAGAACTTAAATATCTCTACACAGTCTGCCTGGCACGGATCT-----------------GTGTCCTGCTTAGATCT- a score=72207.000000 s hg15.chr13_random 319674 727 + 414659 GTTTCTTCAGGAGAAAAAAAGAAAAAAGTAATATAGAGGAAAAATAATAAGATGATTTTTTCTACGCACCTCCCAAAATCACTTTCTTTTTAGACTGCAGATGACTGGTAACT----TCAATTGCACTGCAGAT--GTTAGAAAAGCCCAGTATCTGAGTAAATGTGTATATCATGTTCCCTTTCTA----GTCTTCTCACCTTCCACCCCTTG---CCTGGCCACATTAATTAATAGTTAAAATGCTGATCATAGACACTTCGGTGAGGGTTTTAGCAAAACCTTCAAGTTGCAGCCCTGGCTCTAAAAATGGGACTGGTAATCACCACAAAAGTGAAAGACTAAGAGGAGGAAAACCCCAAATTTACACAGAAATACA------CACAACCCTATACATTCAAATAAAAAGAAGAAAATAAAGATAAGGTAAAAGTGTTTGTGCATGCGCACACACAGACACAATTGTTTAAGCCTGACTTCCAAACAACCATCAAAGAAAATCTCCCCTTCTGTTCTTCCCTGAGTGAAGGGCTTTCCTTACCATTCTGGACCACGCTGATGAGGGTGACGATGGCCAACAGGACAACATTGCCTACAGTTTCTTGATCCATGTTTGCTTCAGGCTCCCCAGAGAGGACTGCTCTGCCTCCAGCTGCACAACCTGCCCTGTACAGGAAGGGGAAGTGAGAGCTTGCACT----CTTTCATCATTACAATTTCTGAAGATCCCCGGCACAATTACACA s mm3.chr5 2620675 651 - 149719773 GTTTCTTC---AAAAGAACTTATTTAAGTACAGAAGTAAAAAGATGATAAAG-ACTTTCTCCTTTATAGCTCGCAAGACTACCCCTTGCCTGA--CACAGACGACAGACGACC----TGGGTCCTGCTGCAAATTGGCTCATTCAGGCGGGTGTCCAAGGGAGCACAGAC-CCCCACACTCTCTCCAGGCTGGC-CCTCCTCTTCCACCCTTCATGCCCTTGCTCCACCA------------------------AGACACTTGGGCCAAGTTTCTCACCAGCCCTTCAGGTTGCTCTCCATCCTCTGCAAACAC-ACCTGACATCATCCTTCAAGTGAGA---------GAAGGAAACCCCAAACTCACACAGAACAGGA------CCCACCCCTGCACACTCACGTACACAGCAATAAATACAGACG-------------TGTGCATA-GTGCACACAG----AATGGTGTGTGCCTGGCTTCCAG------------------CACCCCTGCT----CTCCCTGAG-GAAGGG---CCCTTACCATTCTGGACCACGCTGATGAGGGTGACAAGGGCCAGGAGCACAACGTTGCCCACAGCCTCTTGATCCATGCTTGCTTCAGGCCCGCCAGAGACAACCAGGCTGGTGCTAGCACCTCAGCCT-TCCTGCGCAGAAAGGGGAAGTGCCAGGCTGTGCTCTGCCTTTTACCAT--CAGTTTCCAAAGGTCCCCAGCACAGCCACTCA s rn2.chr12 6945890 657 + 46874691 GTTTCTTC------GGAACTTATTTAAGTACTGAAGTAAAATGATGATAAGG-ACTTTCTACTTTACAGCTCTTAGGTCCTCCTGTCCCCCAA--CACAGATGACAAATGACCTCGGTCGGTCGCGCTGCAGACTGGTGCATTCAGACCAGCGTCCAAGGGAACGCACAC-CCATGCGTTCTCTCCA----GGC-CCTGGCCTTCCACCCTTCACACCCACACTCCACCA------------------------AGACACTTGGGCCGAGTTTCTCACCAGCCCTTCAGGCTGCTCTCCTTCCTCTGCAAACACAACCTGACATCACCTTTCAAGGGAGA---------GAAGGAAATCCCGAACTCACACAGAACGGGACACCCCCCCCCCCCGGCACACTCAAGGACAGAGCAGTAAACACGAATG-------------CGTGTATGCACGAGCACAG----AGCAGTGTGTGCCTGACTTCCAG------------------C-TCCCTGCT----CTCCCTGAG-GAAGGGCTTCCCTTACCGTTCTGGACCACGCTGATGAGGGTGACGATGGCCAGGAGCACAACATTGCCCACAGCCTCTTGATCCATGCTTGC-TCAGGCTCCCCAGAGACAACTAGTCTGGCCCCAGCACCTCGGCCT-CACTGCACAGAAAGGGGAAGTACCAGGCTGCGCTCTGGCTTTTACCAT--CGGTTTCCAAAGGTCCCCAGCACAGTCACTCA a score=923.000000 s hg15.chr13_random 320401 35 + 414659 GTG--CCttcttcttcctttttttttttttttttttt s mm3.chr5 2621326 37 - 149719773 GTGctcctgctcctccccttgtccccctcttcttcct a score=3963.000000 s hg15.chr13_random 320463 221 + 414659 CTGTGGTTCAGTGTGTCCCACCAGGAGAAGCAGGGCTTGGCAGAGGAGCACGCAAAGCCAGCACACTCTCCTACATTTCCTTGTCATGGGAAACTTCCCTGAGAGTCTCCAGAATGAATCCTGGACCCAAGACCATGACCAGCACGAGCCCAGCACAGGCACCAGAGAATCTGGAAGCTGCCATCATCTCTGACTTCAGCAAAGAGAAAGAA--GGGAAAGTa s mm3.chr5 2621740 191 - 149719773 CTGTGGTTTTGAGTTACCTTCCAGGAGTCACAGAGT----CAGAGGGAGAGGGAAGTGCAGCGTATTCTTTGATGTTGC-TTACTATGGGCAGCCTCGCTAGGAGCATA-AGCATGAAATCTGGACCC-------TGCACAGCACGAG------------------GAGCCCGGA-GCCACTACCACTTCTTACACTGGCaaaaataaagaaaagggaaaatg a score=8798.000000 s hg15.chr13_random 321063 82 + 414659 AGAAAAG-TAATAAAGGGAATTCATAAATTAAACCAAAGAATTCAAACCAAACCAAAGAATTCAGGTAAAAGGCAGAAATGGA s mm3.chr5 2622620 81 - 149719773 AAAAAAGTCAATAAAATAAATGTTAAACTTCAGCTAAAG-ATTAAAACTAAACCAAAGAATACA-TCAAAAGTCAGAAACAGG s rn2.chr12 6946866 80 + 46874691 AGAAAAGGTCATGAAATAAATTTTAAAGATCAACTAGAG-GTTAAAACTAAATCAAAAAATGCA-GCAAGAGTCA-AAACAGg a score=7775.000000 s hg15.chr13_random 321145 108 + 414659 GTTA-----------------------------------------CAGAT-GATCCCTAAGGGAAATTCCCAAAGGGAACTGACTTTTCTGAGGCAATCGCAGAAACACCT--------TTCCTGGAAATTCTTTTCAACTGAATAAGAGTAGAGTGG s mm3.chr5 2622887 129 - 149719773 aTTAGAGAAAAAAAAAA-------AGAGTCATAA-CAGCATTAACCAGAT-AACCCCCAAG-AGACTACCCAGAGAGGACT-------------------CTCAAACACCTCAGCTGGCTTCCCTGAATTTATCTCCAGCCTGATGAGAAGAGAGTAG s rn2.chr12 6947144 138 + 46874691 AATAGAGAAGTAAAAAAGAGAGAGAGAGCCAGAAACAGCATTA-CCAGATTAACCCCCAAGGAGAATGCCCAGAGAGGACT-------------------CTCAAACACCTCAGCTGGCTTCCCTGAATTTATCTCCAGCTCAATGAGAAAAGCATAG a score=49951.000000 s hg15.chr13_random 321298 1185 + 414659 AGGTGGC-------TGCCTGGTATTCTGCAGCTCAGA--TCAGTGTGAATGGCAATCCCTCTGAGGTTACATGGAAAATGCAAAATACCTGCAATCTTTGTCCCA-GACTTAGCTATTTGGCATTGGTTAAGAGGTGCTTTTATCAAAACTTCACTTTGAAAGGGAACATGG-----ACCACTGTAACTAGTGGCAGCAGGGAGGGCTGCATC-TCGGCACGGAAGAGGTCAG--TGTAGGGGAAGATATTGCTCCCTCATAGGTACAGTGCCAGAGGCCCGCTTCAATGCCCTCGGTTCAGCTGAGAGAGAAAGGCTGATGAAGGCAGCGTGCAGAGTTGTGTGCGGGGAAGCCAGCAGCCAGGGCTGTCGGGCTGGTCATGACACACTTGGGTACTCCCTGAGTACCTAGGGCACTTTGTAGAGTATAGACTTtatattagccaaggctctccag-------agaaactgaaccaatatataaataagtctcctcatatatatatattgcagatttataatagaaattggttcacatgctcatggacaccatgaagtttcatggtttgccatctgcaagctggagactcagaaaagctgctggtggagaccagtctgcattcaaaggcctgagcatcaaggagggcaatggtgcaagacccagtctgaatccaaaagctggagaacaaggggctccagtgtccaagggcaggagaagatggagggcaatggtgcaagacccagtctgaatccaaaagctggagaacaaggggctccagtgtccaagggcaggagaagatggatggcccagctcaagaagaagaggg-----aatttgcccttctgcccgctttttgttctattcaggccctcagtggattgatgacacccaccatattggtgagggtgggaattctttacttagtccgctgattccagtgctgatctctttcagaaacaccctccctaacacacccagaaaaaaacattttaccagctacctgggcattttttagctcaatcaa----tttgacataaaattaactaccacaGAGTTATTACAAGATTGGTTA-GGGCTCAGCACTTGCAAGATTTGTATATTCACCTTAGTGAGATCCAATTCATACCTGCAGTTTGGTAAGTTTCAGGGGATGTTTAGGTTTTGGTAGCCAAGGAGTTTGAACCCCATAAAGCGTTAGCTCTTCTAACACTTACAT s mm3.chr5 2623676 861 - 149719773 AAGCGAC-------GTCTTGCCACTCAACAGGACAGCTTTCTGTGTAAATAGCAAGCCTTCAGAATCTGTGCAGAGAT------------ACAACTTTTGTCCCCTGTCCCAGATAT----------TCAAGAAGTGCTCTCA--------------TGAAAAAGGACACAGCACAGGCCACTGTCATTGTCGGCAGCAGGGA--GCCACATCGTCGGGGTGGGACAGGCCTGGGTGGAGAAGAGACCATTG---GCCCACATCTACAGTGGCAGAAGCCAGCTTGAGTGTCCTCAGTTAATC------------------------------CTGAGGTGTGTTCG--------------CAGAGGTGCTGTGCAGG---------GCTTGGATGC---------------------------------------ACATGAGCCAGCGGTATACGGCTCGGtaagaaa-------------------------------------------agattaaatgtgggaatca------atttgcacagaggtcaaagaaccccacgatctgccatatgccaaccgaagacccaggaaagctggtggtgtgctgcagtcacagcccagtggcctga-cgttggggacaccaatggtccaaggccaagactgagtcccaaagccagagaaccagctgttc--atctccagggacagacgt----------------------------cctggcactg---------------------cttgtgtacagttcctgaagaggccag------------------cagagggcgtcagattc--------------------------cctggacctcaatagattg--gatctcaactaaattagtgaaggcagtacttcttcacctaatcccatgattcag----tgggctct-----------cctcactgactcacctagaaacaatgtttctatcaactctcctg-ta-cagtaagc-cagggagggcgcttatacataaattagcaatcacaGAGTGACAACACACTTGGTTATGGGCTCAACACCAGCAAGATTTGTGTGTGTGTC------AG----GATTAAGACC----------------CCAGAGGG----CAAACCTGAGCAGCCATAAAG----------ATAAAGTGTTAGC--------------CAC s rn2.chr12 6947744 828 + 46874691 AAGCGATACATGGTGTCTTGCCACTCAACAGGACAGCGTTCTGTGTAAGCAGCAAGCCTTCAGGAGCTGCGCAGAGTT--CAAACTGCCCGCTACTTTCGTCCCC-GTCCCAAATAT----------TCAAGAGTTGTTCCCG--------------TGAACAGGGACACGG-----GCCAATGTCATTGTCA---------------------------TTGGGCA--------TGGAGAGGAGGCCATTG---TCCTAGACCCACAGTGGCAGAGGTCAGCTGGAGTGTCCTCAGTTAACC------------------------------CTGAGGTGTGTTCA--------------CAGAGGTGA-GTTCAGA---------ACTTGGATGC---------------------------------------ACGCGAGCCAGCGGTGTACAGCTCAGtaagaga-------------------------------------------agattaaatgtgagaatca------atgtgcacagaggcccaagaaccccat-atctgccatatgccaacc--------aggaaagctggtagtgttctgcagtcacagcccagaggcccga-cattgcggataccaatggtccacggccaagactgagtcccaaagccagagaaccagttgctcc-atctccagggatagaaga----------------------------tgcggctc-----------------------------------------agagattag-------------------aggggacg---gattcattctt----tcgctgtgtgtcct-tcttggacctcaatagactg--gatctcaactaaatcagtgaaggcagatcttcttcacctaatcccatgattcag----tgggctcttctagaaacatcctcacagactcacccagaaacaatgttt-tgtcaactctccgggtatccctacgc-cagggag----ctcgaacctaaacaaatgatcacaGAGTTACAACACACTTGGTTATGGGCTCAATGCCAGCAAGATTTGTGTGTGCGT-----------------AAGACC----------------CCAGAGGG----CAAACCTGAGAGCCCGTAGAG----------ATAAAGTGTTAGC--------------CAC a score=3229.000000 s hg15.chr13_random 322483 201 + 414659 CTTAGTGACAATGCATCAGAAATGAAGGCCAGTCCTCTTACAAAGTATTCCAgttgcaagcaatagaaacttagctcaaactag--tttaagcaaaaaggagaatttattcactcaAAGAGTCTAAAAATCTGA-CAGCTGAAG-TTGAAAAGAACAGAGATGTGGTTAGGCCTTGGAGCTAGAGAGctttctctctctctctct s mm3.chr5 2624678 144 - 149719773 cACAG--------------------------------------------------------AATAGAAAC--GGCTCAAACTAGCTTGTATGAAAAGAGAAGTTTTTTTGGTTCCCAAGA--CTGAAGAACTGAGCAACTGAGCGTTATAAAGAACAGAAATGGGGTTGAACCTTGTAGTTGGG-AGTTCTTGCTTACTCGTTCT s rn2.chr12 6948714 104 + 46874691 ---------------------------------------------------------------caggaac----------------taTGTGGAAAGGGAAGAATTT--AGGCTCAAAGA--CTGAAGAACTGA----TTTAGA-----AAAGAACGGAAATGGGGTTGGACCTTG--GCCGGG-------TTCTCGCTCGTTCT a score=4061.000000 s hg15.chr13_random 326889 35 + 414659 ctacagagaggcaagcataaaaatagggctgcctg s mm3.chr5 147182997 35 + 149719773 CCATAGCGACACAGACACAATAATAAGGACGGCAG s rn2.chr12 39973513 35 - 46874691 CCATGGAGACACAGACACAACTATAAGGACTGCGG a score=27663.000000 s hg15.chr13_random 327215 393 + 414659 tagggccaccagtgggagacaatgacaagtaacctcgtgagaatgggggtgattgtgt--cagagGTTCTGCCACTATGTGCTTATTGGGTACAGCTCT-----------CAGTCCCATTATTACGTGGG---CATCACAGCACCAGCCAGGGCGAGGGGACAAGTGACCAGCCAGTC---CTCCCGACCCAGGAAGGGGTTGGCTAATCCCTTTAGCATCCT-TCCCTTTTTTTTTTTTTTTCTCACTATGGAGGTT-TCATGTAGACTTGTGATGTGATTAGCGCAGGAGGAAAGGGTGAAGCAAGATCCCCTTAACTTCTAGAATTTT--------------CTCCCACGATTCCTAGAACTATCAAGAAAATAAGCAAAAATTGTGTTGAATGT--GAAGAGAGAAGAGCAGTGTCAGTACAAAGG s mm3.chr5 147183032 376 + 149719773 CAGG------AGTGGAGG-----GAGAGCGACCCGTGTGAGAA-----GCAAGTGAGCAACAGCGGCTCTGTCATGA-GTGATGTTTGAATCCAGCTGTTTGAATCCAGATGTTAGCCTCTATGCACGGGAGACAGCACAT-GCCAGCCAGGGT--TGGGATGGGTGACAAATCACACTGTCTTCTGCCTCTGGAA---AATGGATG-------TAACAGCTTAGCCCTTTTGCTAGTTTTTGCT--CTGTGAAGATTCTAATGTTAGCTTGCGATATGATTCACATAGAAGGGGAGGGTGAGACAGAATTCCTTTCATT-------TTTC--------------CCTCCATGGTTCCTGGAACCTTCAAGAAAACAAACCAAGATAGC-TTGGATTTAAAAGGAGAGGACAATAGTGCCTGTTCAAAGG s rn2.chr12 39973548 335 - 46874691 CAGG------AGTTGAGG-----------------------AA-----GCAAGTGAGC----------------------GATGTTTGAATCCAGCTGC---------------AGCCTCTGTGCATGGGAGGCAACACAG-GCCAGCCAGGGT--GGGGACGGGTGACCGATCAGACTGTCCTCTGCCCCTGGAA---GTTGGATG-------TAACAGCTTAGCCCTTTTGCTAGTTTTTGCT--CTGTGTAGATTCTAATGTTAACTTGCAATATGATTCATGTAGGAGGGCAGAGTGAGACAGAATTCCTTTCATT-------CTCCCTCCCCCTCCCCCACTCCCATGGTTCCTGGAGCTATCAAGAAAACAAACCAACATAGT-TTGAATCT-AAAGGAAAGGAGAGTCACGTACGCCTGAAGG a score=70010.000000 s hg15.chr13_random 327608 705 + 414659 CTGACCGAGCATCCATGCTGACCACA-ACTGTGTTTATGCCAGCTTTATGACAGTGATAGGAACTGCATGTG---AATGATGTTTAA-GACTCTTGAATAAAAGCACGTAGAGAATATTTCCTAGGGTGAAAAACAGAAAGGTCCCCTGTGCTCCCATTCTGTAACTCCTATTATGAATAAAATGGTGTGTTTCACATTTAATAAACAGTTGCTGGG-TTGGATGGATTTCCT--TTTTGTATCCAGTGGACTGAAGGTCAAAAGGTATATTTTTGTGTTTTTTTTTCTGCTCTAATTTACACCCGCTATTTACAGACCTGCCAT-TTCCAAGCTT-AGAATACTTCCCATAATGCAGGAAAGAGGCCAGATGAAGTGGCTAGAGGTCTCCTGCCTCCTGGACATTCAGAAGAGGCAAACTGCCCCTAACAGAAGGACTTGAGTCCCTGAAACAGTGGCCTTTAACCAACCCATGCCACTATCTCCCCTTTTGTCCATACAAGGTCACTTGCTGGACAGCCTGGCTtagggttgtcagatcagacacgggatacccagttaatc-tgaatttcaggtacaag-atagtttatttagtataaaaatgtccccaatattgcacaggcagatgttcgtgcttatctgaaattcaagtttaactgggcaccctgtatttttatttcctaagatgacaaccACTGCCCTGGTTGGGGGTAAG s mm3.chr5 147183933 633 + 149719773 CTGAACAGGCTTCTGAGCAGACAACAGACTGC-TTTCCATCAGCTTCTTCAGAGTGACAGGAACTACCCATGGCCAGTGCTTTTTAAGGGATCTTGGA-AAAAACACGT--AGACTTCCTTCAAAGGTG-GAAGCAGAAAGGCCGCCTGGGCT-CCATTTTGTAAATCCTATTGTGAATGAGATCTTATGTTTCACAGTAAAACAATGGTCTGGAGC-TTGGATGCACATCTTC-TTTTGGACTCAGTGGACTAAAAGGCAAAGGTTA-GTTTCTGTG-----------ACTCTAATGATCA-TTACTGTTTACGGACTCACCATGTTTTATAGTT-AGACTACTTTCCACAATGAAGGAAAGAGGCCAACTTGGGTTTCCAGAGATCTTGTCCCTCTTGGTGGTT---AGGAGGCAAAGCACACCGGATAATAGGACCTGAGTCTCAACAGCAGTGGCCCTTGGTGAGCACACGCTAGTGTCTGCACCTT--------------------------AATCTAGCTGAGTGATG---------------------CTGTCATTTGTGAATTT--ATTGCAAT-AAAGTGATTGTATTTAAAATGTGTCCCTAGCATTTTACAGATAGATATTCACA--TATTTGAAATTCAAATGTTTCTG-------TATATTTTTATTTATTAAAGTGGCCATCCTAGTTCTGGTTGGGAGGAGT s rn2.chr12 39974399 638 - 46874691 CTAAACAGGCCCCTGTGCAGACAACAGACTGCTTTTCCATCAGCTTCTCCAGAGTGACAGGAACTACCTACAGCTCATGACTTTTATGGGATCTTGGA-AAGAACACAT--AGACTCCCTTCAAACATG-TAAGAAGAGAGGTCTCCTGGGCT-CCATTTTGTAAGTCCTACTGTGAATGAAATCTTATGCTGCACAGTAAAACAACTGTCTGCAGCATTGGATGCACATCTTTATTTTGGACTTGGTGGACTAAAAGGCAAAGGTTG-GATTCTGCA-----------GCTCTAACGATCA-TTACTATTTATGGATTCACCGTGCTTTGAACTTAAGAGTACTTTCCACAAAGCAGGAAAGAGGCCAAATGAGGTTTCCAGAGGTCTCTTCCCTCCTGCTGGTT---AAGAGGCAAACCACACTGGGTAATAGGACATGAGTCTCAACAGCAGTGGCCCTTGGTGAGCGCAAGCTCATGTCTGTGCCTT--------------------------AATCTGGCCGCGTGGTG---------------------CTGCTATCTGTGAATTT--ATTGCAATAAAAGTGACTGTGATTAAAAAGTGCCCATAGTATTACATGGATAGATATTCAAA--TATTTGAGATTCAAATCTCGCTG-------TATATTTTTATCTATTGAAGTGGCCATTCTAGTTCTGCTTGGGAGGAGT a score=2163.000000 s hg15.chr13_random 328313 125 + 414659 GGATGANGCATTCCCAGCAGCAGGAGCCGCTTACACCACACATTTGCTGCCTCCCAGGCTTG-CCCGTGTCTGGTCTCCTGCTCTTCTCTAGCAAGTGGGACTTACTGACACATAACAAGAGAGGG s mm3.chr5 147184566 116 + 149719773 GA--GAAGCATTTCCAGCATCAGCCGCTGCTTAAATCAC-------TGGTCTTCCATCTTTGTCCCTTGTCTGCTTTTATAATTCTCCTATGTGACTGGGAC-TGCCAGCATATAGAAAGAGGATA a score=13821.000000 s hg15.chr13_random 328438 149 + 414659 TTGTCACTGGTATGAGCAGCCCTCTCTCCTTGCCTAATTTTTTAGTGTCTCAATGAGACTCCTATGTCCATG-TTAGGACATTCTCTCCTTCCCCTGCCTTATAGTAGAAAccatccatccagccatcatcacctatccactcatccact s mm3.chr5 147184682 143 + 149719773 TTGTCACTGACATGAGCCATCTTCTGGATTTATCTACTTCATCAGAATCTTGGTTAGACTCCATCAACACTATTTAGAACATCCTGTCCTTTCTGTGTTTTGTAGTAGAAATTGT-TATCCATCTAT------CTGTCCACTTATTTATT s rn2.chr12 39975038 135 - 46874691 TTGCCACTGACACGAGCCATCTTCTGGATTTACCTTCTTCATTAGCATCTTGATTAGAGTCTACCAACTCTGTTTAGAGCA---GGTGCTTTCT-TGCTTTGTAGTAAAAACTGT-TATTCTTTTAT------CTGTCCAC----TTACT a score=70717.000000 s hg15.chr13_random 329445 632 + 414659 TGCCTGAACCCAC----TCCTGGCAA-GTCTGACAAAGTCCCCAGGTGTTCCTTTCCGAGG-----ATCAG-GTCTTCCCT--------------CCAACCCAGCAGACACTCTGAGGTTAAAGGAAAACTAATTCCTCTTCC----ATTTTTCCATCTGGCCTGCTTC------------TTGATTCTTGCCCTCCTCACACTGGCTACTGAAAACGAAGCCACTTCATTTCATGGATGTAGTTCATTTCCT-GCTGGTTGCTTTGGATCTTGGATGCCTTTCTCCATGAAAGCAACCCTAAGCAGGGTGGCTTTATCCCCCAGAAGTCCAGCCCCCATCTTGTGGCTCC---------AGG---TGTCTTCAAG-------GGTGGGCTGGAGGGAGGTGCTGGCCCCTGGGCAGTTCCCATGGCAGCCTGTGAGCAGGCTCCAGC---AGCAG----GGCAGAGCTCAG-GGACCCCAGCGAAGGATGCTCTGTGAGTGGCTGGTTCCCATGGCAACTGAGGAGCAACCTCCACAACAGCTAGGAACCCAGTCACTCCAGCTAGAAGCTGTTGGGAAGCTCAGCGTCTGGAAGCCTGGAGTCACCTGTGGCTGCAGCCTGGAGCTGAACATCTTTCAAGCTGGGATATTTCCATTACCAGCATGCCCTGAATAGCTCTATTTCCGTTTCCTCAaaaca s mm3.chr5 2533839 651 - 149719773 TGTCTGAACACACACTTCTCTGGGAA-GTTT--CAGGGTTCACA----TCCCCCTCTGGGGATGGAATCAGAGTCTTTGTTCAGAGCTGCCACCACCACCCCAGAAGCCCTTTGGAGGATAAAG---AATGGACCCCCCCCCCCGCCGTTTTCTTCTGCTGCTTGTTTTTGGGGGGAGGAGGGGGACCTCACTCTTCTCCGGTTAGCTG--GGATGTG------------TTC----CAGTAGCCCATGTCCTAGTTGTCCACTTTGAA-CTTGAATGTACTACTCCACAGAAGCTG-CTGAAACTGGGTAACTTTGTGCTCTAGAAGCCCAGCCCCCACTGTGTGACACCCCCCCCGCCAGGCTCTCTCTGCCGGGTGGGCTGGTGGGCTAGAGGGAGATGCTAACATTTCAGTGGTTCCCATGGCAGCATCTGAGAAGATGCTAGCCATGGCAGCTGAGGCAGAGTTCAGGAGACCCCAGAGAAGAACACTCTGTGAGCGGCTGGTTCCCATGGCAACTGCAGAGTG--CCCCTGAGCAGCCAGGAACCT-GTAACCAAGGCTAGG--------------TCAGCCT-TGAAAATCTAGAAT-GTCTGTGGCTGCAACCTGCAGCAGAACACCTTTCCAG-GGTGGTATTTTTAGTACTGGCATGTCCTAAATAGCTGAGCTTCCAGTCCGTGAAAGCA s rn2.chr12 6896941 629 + 46874691 TTTCTGAACATTCACTTCCTTGAGAACGTTT--CAGGATGCCC-----CCCCCCCCCACGGATGGAATCAGAGTCTTTGTTCA------------CAACCCCAGAAGCCCTTTGGAGAAGAAAG---AGTGGATCTGCCGTCC----ATTTTTTTCTACTGCTTGTTTT-GGGGGGGGGAAGGGATTCTCACTCCTCTCCAGTTAACTG--GGATGTG------------TGC-TGCCTGTAGCCCATGTCCTAGTTGGTCACTTTGAA-CTTGAGTGTACTACTCCACGGAAGCAG-CTGAAATGGGGCAACTTCGTGCTCTAGAAGCCCAGCCTCTACTGTGTGGCGCCCC-------AGGCTCTCTCTGCTGGGTGGGCTGGTGGGCTAGAGGGAGATGCCAACATTTCTGTGGTTCCCATGGCAGCATCGGAGAAGATGCTAGC-ACGGCAGCTGGGGCAGAGTTCAGAGGGCCAGAGAGAAGAACACTTTGTGAGTGGCTGGTTCCCATGGCAACTGCAGCGTG--CCTCTGAACAGCCAGGAACCT-GTAACCAAGGCTAGG--------------TCAGCCT-TGAAAATCTAGAAT-GTCTGTGGCTGCAACCTGCAGCAGAACACCTTTCCAG-GGTGGTATTTTTAGTACTGGCGTGGCCTAAATAGCTGAGCTTCCATTTCCTGAAAGCA a score=230877.000000 s hg15.chr13_random 351140 1613 + 414659 CATACTCTCACAAGAACAAAATGAAACCAAAAAGGAGAACACATTCAGTGATTTTAATGTGTAAGAAAGATTACATGCTTCATGGGCAGAACCAAAGG-------TTAAACCTTGCATTTTGTTCATGGTTATTACACAAGTAATTACACAAGTCCAGTGTATAAACACTACCTGAACACATTGTAAGTTCTTCtaataataata---aatattatatGAAAAAAGTTAACAAGCATTAATTCAATAATTCTCAAACAGATATTCATCGAAATGAGGTAGGTCTAATGTGTCATTTGCTAAAGCATTTAATGCTGAGGAGGAAAAAAACTCATCGAAAATATCAGTCTTCATCGGACTCTCCAAGTTTAATGTTCTAACGCAGGCATTATTTGTCAGAGAGTCTGGCTGAACTTCACATGGATTTTTCTTGGTGGGGCTACAATAATTATGGTCCTGTCTCAGATGTGTGTTCTGGGAAACATCATTGAATTCACTTGGTACTGGTGGTGGGATATGACTATCTCCCATTCCCAAATACCTAAAGTCACCTTCCCCATTTTCTGACAGCTCTGTTGAAACAGGTGTAGGAGACAATAATTCCGCTAAAATTTCTTCATGAGTTTGACTACTGTACAGGGAAACACCAGGAACAGTGGTGCATGCAGACTCACTG---GCAATATCAATTGGATATGGTAGCTCATTTAACAAGTCCTCTATTGATTCACAATCATTTGGAGACCCATCCTGGGG------------------------------------------CACCTGTTCTAGATTTTCACTTCGAACTGTTCTGCTTTGCGGGGAAGACATAAGAGCAGCTAATTTCTTCTTTTCTGCCTTTAGCTTTTTACGAAGTTTTAGACGAAGTTTATGAATCTGACCTTCCACCAAGTCTTCATGGTTTGCTGAAGAAATACCATTCCCAT------AAGAACTGTGGTTGAGTTGAGCTCCACATGAGGTGCTTCCAGACTTTTCCAAAACTTCTGAAGCAGCATG------AGCATGTGGGTGGGCAGCTGTGCCATTAGACGATGGAGGGCCTGCTGGTGGCTTACTGATGGGAGGAGGCTTACTTGCACTCTTACGAGCTTTCTTGGATACGTGGCTGGCCTTCTGGTTTATACCTTTAGTTTTAAAGCCACCAAAATTATTTACCCCTTTAACTGAAGGTTGTAAATCAGTTATAGTGTTTCTATTATGAGCTGAAACACAGAGTGGCATAAAAGAAGCACCCCTGCTTATTAAGCCTTTAACCCAACTTCCCACAAATGGCTTCTTCTGATTTTCTTTCAGAGACTGATTCTGTAATGACTTAGATGTTGTGGTTTGAGAATCTGCTGTAGTTTCTTTTTTCTTCAAATTAGATACCTGAGATGTGAC------ACGTTCTGGTTTTAATTGTTCAGTTTTTGGTGTAAGGAATTGTTTTAACTGAGCGTCCTTCTCAATTTCTACTGACTTCACTCCCTGTATAAGACCAGTAGCATCAGTATTATTCACAGATTTAGTATTTACAGTATCTTCTGTATTCAGCTGTACTGACTGCATGTTTGTATTTACAACTTGGGATGGAAAACTTATGTCCACAAATTGGTCTTGAATAAGCTTTTCATTACATGGAGCTGATACTGAAGAAG s mm3.chr5 2671374 1613 - 149719773 CATTCTTCCACAATCACAAAATGAAACCAACA---AAAACTGGGCGGAGGTCTTTAATTTGCAGT--AGATCTCATGTCTCACAGGCAGA------------CTCCAGTAGCTCACAGCTTCCC-ATGGCTAGAACACAAGGCTATGCAT---TTCAG----CCAATACTACC----CAAGAGGCACAGCCTCCTAGCAGCAGTGGTCAGTATTTAACTAAAA-----CACTAGCACGCACTCAGCAATTCTCAAACAGAGAGTCATCAAAATGAGGTATGTCTAATGTGTCGTTTGTTAAAGAATTCAGTGCTGAGGTGGAAAAAAAATCATCAAAGATATCAGTCTTCATGGGACTCCCCAAGTTCAAGGTTCTTATACAGGCACTGTCCATGACTGAATGCAGATCAACTTCCCGCTGGCCTTTCT---CAGGGCTGCAGTAATCATGGTCCTGTTTCAGACATGTGTTCTGGGAGACAACACTGAATTCACTAGGTGCTTGTGCTGGGGTGCTGT---CCCCCATTTCCAAGTACCTCAACTCAAGCTCCCCACTTTCTGAGGGCTC---TGACATGGCTGTAGGCGACAGCAACTCTGCTAAAATCTCCTCATGACTCTGGCTGTTATTTGAGGTGGCATCAGGAGCAGAGGTGCACCCAGATTTGCTGTCTGCAAGGTCAATTTGATGCTGTAGCTCTTTTAACAGATCTTCTATGGACTCACAGTCATTTGGAGATCCACAATGGGATACAGGCTCTGACTGGTCACTTGCAGGTGTTCCACAATGGGACGCAGGCTCTGAGTGGTCACTTAGAGATGGTTCACGGTGCGGGGAAGAAATGAGGGCAGCTAGTTTCTTCTTTTTTGCCTTTAATTTTTTAAGAAGTTTGAGCCGAAGCTTATGAACCTGATCTTCAGCCGCATCTCCACGGCTTGCTGGAGAGATGGCGCTTTCATTGCCAGGAGATCTGTGCCTGAGGGGAGCTGGACGTGA---GCCTTCCTGCTCCCTCAACAGAGCTGAGGTGGCGTTCTCAGCAGCCTGGGTCAGAGCAGCTGTCCAGCTCAATGGTGGAGAGC------------TGTTCCTTGGAGACAGTTCCTCCATGTGCTT---AGCTTTCCTGGACATTCTTTTAGACCTGCGGCTTATACTTTTCGTTTTAAAGCCATCAAAATTACTGGCTCCTTTAACAGAAGGTTGCAGGTCACTTACTG---CTCTACTCTGAGACAAAACACAGGTTGGCATAAAAGCACCACCCCTGCTCAATAGCCCCTTCACCCAACTTCCCACGAAGGCTCTCTTCTGATCTTCTTTCCGAGGCTGATTCTGTGCTGACCTGGCTGCTACTGTTTTAGAAGACGCTGTGGTTTCTCGTTTTCTCAAATTAGATGCCTGAGATTTACC---AGGTTGCTCAGGATCTAACTTCTCAGTTTTCAGTGGCAGCAACTGTGT---CTGAGAGTCCTTCTCAGTTGCCAGGGACTTCAATTCCTGAACAAGAACAGGAACAGGGGCATCAGTCACAGGGTTAGGAACCACAGTGTCCCCTGCCTGGGACAGTACTGCCTGCAGGTCTGTGCTCACAGCTTGGGATGGGAAACTTGAATCCACACATGGGGC---AACTAGCTTTCCTTCACACAGGCTGGACACTAAGGAAG s rn2.chr12 6996080 1580 + 46874691 CATTCTTCCACAATCACAAGATGAAACCGACA---GAAACTTGTCTGAGGACTTTAATTTGCAG---AGATCTCATGTCTCACAGGCAGAACCAGAGGAAGACCCCAGTAGTTCACAGTTTCCCCATGGCTGGAGCACAAGGCTGTGCAC---TTCAG----CCAGCACTACC----CACA--GCTCAGCCTCCTAGCAGCAGCGGTCAGGACTAAACGACGA-----CACTAGCATGCACTCAGCAATTCTCAAACAGAGAGTCATCGAAATGAGGTATGTCCAATGTGTCATTTGTTAACGAATTCAATGCTGAAGTAGGAAAAAAATCATCAAAAATGTCAGTCTTCATGGGACTCCCCAAGTTCAAGGCTCTTACACAGGCACTGTCGATGACTGAATGCAGATCAACCTCACACTGGCTTTTCT---CAGGGCTGCAGTAATTATGCTCCTGGTTCAGACATGTGTTCTGGGAAACAGCACTGAATTCGCTAGGTGCTGGTGTTGGGGTGCTGTTGTCCCCCATTTCCAAGTACCTCAACTCAGGCTCTCCACTTTCTGAGGGCTC---TGACAGGGCTGTAGGCGACAACAGCTCTGCTAAAATCTCCTCATGACTCTGGCTGTTGCATGAGGTGCCGTCGGGAGCAGAGGTGCACCCAGACTTGTTGTCTGCAAGGTCAATCTGGTACTGTAGCTCTCTGAGCAGATCTTCTACTGCGTCACAGTCATTCGGAGACCCACAGTGGGA------------------------------------------CGCAGGCTCTGAATGGTCGCTTACAGACGGTTCACGGCGTGGGGAAGACATGAGGGCCGCTAGTTTCTTCTTTTTTGCCTTTAGCTTTTTAAGAAGTCTGAGCCGAAGCTTATGAACCTGATCTTCAGCTGCCTCTGCACGGCCTGCTGGAGACATGGCGCTTTCATCACTGGGAGGTCTGTGGCTGAGGGGAGCTGAACGTGA---GCCTTCCTGCTCCTTCAACTGGGCTGAGGAGGCATTCCCAGCGGCCTGCGGCAGAGCAGCCGTGCTACCCGACAGTGGAGGGC------------TGCTACCTGGAGATGCCTCCTCCACATGCTT---AGCTTTCCTGGACATCCTTTTAGACCTGCGGTTTATACTTTTCGTTTTAAAGCCATCAAAATTATTGGCTCCTTTCACGGAGGGCTGCAGGTCAGTTACTG---CTCTACTCTGAGCTGAAACACAGGGTGGCATAAACGCACCGCCCCTGCTCAGCAGCCCTTTCACCCAACTTCCCACGAAGGCCTTCTTCTGCTCATCCTTCCGAGGCTGATTCTGTGCTGACCTGGCTGCTACCGGTTTAGAAGACGCTGCATTTTCTCTTTTTCTCAAATTAGATGCCTGAGTTTTACCTGGTGGTTGTCCAGGGTTTAACCTGTCAGTTTTCAGTGGCAGCAACTGTGT---CTGAGAGTC---CTCAGTTGCCATGGACTTCAATTCCTGAACAAGAACAGGAACAGGGGCATCAGTCACAGGTTTAGGAACCACTGTGTCCCCTGCCTGAGACGGTACTGCCTGCAGACCTGTGCTCACAGCTTGGGATGGGAACCTGGAATCCACACAAGGGGC---AACTAGCATTCCTTCACACAGGTTCAACACCAAG---- a score=38017.000000 s hg15.chr13_random 353225 420 + 414659 GGCAGTTCAAACAAGAATGCCGATGAAGCTGCCCAGGATGGCCAAGGC-CACCTTGGTGTGTTTGAGGGGAATTAGAGTTTAGAAAAAAAAAAAAGGCACCTGACACTCTGAACTAATGTGGTTAC-------CTGGAATTTTGGGGTTTTGAAGCTTTGCAT-TTAATTTGTAGCTTATGGCCTGAAGGAAAAGACAGGTGAAATGCATATCCTGGGATGAGTCACCTGGA---------GGAGAGGGCTGGG-AAGGGGCTGAGCTGCACATGCTCA--------------------------------------------------GATCTTCTCCCAGGCTTATCGACCCAGTGAGTCAAGTCTTCTTCCAACGGGATAGAGTGTGAGAGAGAGCAGGGAACAGAAGCCAGAGTCTCTGTTAAATTTCTCGGTACATTTCTGTTAGAGAATGGAAGTTTCTCTATCGTAGGAGACCTTGAGAGCC s mm3.chr5 147073693 424 + 149719773 GGCAGTTCACGCAGGAATGCCA------------GGAGTCCTCAATGGCCCCCTGAGTG-GTTTGTGGGGGATTAGACTTCAGCACAATC------TCACCTATCGCTCTGAAATGATGTGCTTACTCAGGTACTGACA-TTTGAAGGTTTGAAGCTTTGTATGCCATTTTGCATCTTGCCACCTGCAGGAAAAGGTTGGTGAAAGGGACAGCTAGGAACAAGTCAGCTTGA---------CCATGGGGCTGGG-AGGGGGCAGAGCTGCACATCTGCA----TTtgtgt-----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTCACAGTTCCAGATTGGGTAAGTCAAGTTACCTTCC------TTAGATTG-----GGGAGTGGGAAAAAA-GGCTGGAGCCTCCACT----------GTTCACTTCTGCTGGAAGATGAGGGTTCCTCTGCTCT----GAACTTGGGAGCC s rn2.chr12 39902457 418 - 46874691 GGCAGCTCAGACAGGAATGCCA------------GGGGTCATCAACGG-TCCCTGTGTG-GTTTGTGGGGGATCGGAGTGCAGCACAGTA------GCGTCCATCACTCTGAAATGATGTGGTTGC-------CTGA---------------AAGCTTTGCATGCCGTTTTGCATCTTGCCACCTGCAGGAAAAGCCTGGTGAGATGGACAGTTAGGAATAAGTCAGCCTGAGTCAGCTTGCCTTGGGGCTGGGAAGGGGGCGGGGCTGCACACCTGCAGGGgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtCTCCCACAGTTCCAGATTGGGTAAGTCAAGTTATCTTCC------ATAGGCTG-----GTGAGTGGGGAAAAG----CAGAGCCTCCACT----------GGCCACTTCTGCTGGGAGATGAATGTTTCTCTGCTCT----TACCTCAGGAGCC a score=11922.000000 s hg15.chr13_random 354805 124 + 414659 GGTCAAGAGAAAAGATCCTCCAC--------------AAGAGGGTCCTATGTGGCTGCAAAAACTGCTCTGAGCTAAATCCACTCAAAATCACTGCAGGATGTCACTACTAGAAAATAGGGCAGGGATAGGGATCCCC------------------------------------------------------------------------------- s mm3.chr5 147076743 186 + 149719773 GAGCAAAGGGAAGGCTCTGCCAC--------------AGGAGGGTCCTGTGTGGCTGCAAAAGCTGCTTTGACCTAAAACCACTCAGGAGGAGTCCAGAAAG-----------------GGCAGGGACAGAGACGCCTGCCGGCTGCTGGTGGGAACAAGAGCACCAGGTGTAACGTCTCCCCCCCCCCCCCCCCCCATCTAACTGAGGTGCCATTT s rn2.chr12 39905801 211 - 46874691 AGGCGAAGGGAGGGCTCTTCCACCGGAGGGTCCTGTGCGGAGGGTCCTGTGCGGCTGCAAAAGCTGCTTTGAGCTAAAATCACTCCAAATTCATCCAGAGAGGAGCCATGGGCAAA---GGCAGGGGCAGAGACACCAACCGGCAGCTGCTGGGAACCAAAGCATGAGGTATAACATCT---CTTTTCTCCTCCCCAATCTAACCCAAATGTCATTT a score=2410.000000 s hg15.chr13_random 354929 167 + 414659 -----------------------------------------------------------------------------TTCCCATGCTGCCAGAAAATGCCTGA-------TAGCTTACCTCCCCCGGCCCTTGAGGCT-CCCTTGGAATAGGCACATGCAATCCCATCTCCACCCAATAGAGCTTGTCCTAGAGCTCAGTTTTTTCCCATAGTTTTCCCACCCACTTGCACCAGAAAATCTAATAAAG----TCAT s mm3.chr5 147076929 256 + 149719773 TGGGCCCTTCTGTGTGTCAAAAACTTAAGTATGTCTGGTTCAAACACCTGATTTCATGGCTTCGAGTTTCTAAAGCTTTCCCAAGTTGCCTGCACATACCGGAAGTTCGGAAGTTTGACTCTCCTGGCCCTTCAGTCTCCCCTTGGAATAAGCATATATGGTCTCATTTTCACACAACCGCATTTGTCCCAAATCTTAGTCTTTTGGGTAGTTTTTATCACCCAAACGAACCAGAAGCCCGAAGAACGAGCTTAGC a score=1797.000000 s hg15.chr13_random 355096 110 + 414659 GTGATTAATACAATTCATTT--TATCACGCTTCTGAAGATTTAAGAGAGAGCGGTCACATTGGATTCCACAGTACCGACCTTCTGACGATTCTTCATTTCACCTTTATCTAt s mm3.chr5 147077185 70 + 149719773 GCAACCAGTACCACTCCCTC-------------TGAAGGCTTGAGAA--------CCCAGTGGG------------------CTGAGAATCCCAGGTTCCACTT---GCTTT s rn2.chr12 39906013 81 - 46874691 GCATCCAGTACAGCTCCCCCACACCCCCGTCCCTCAAGACTTGAG----------CCTAGCAGG------------------CTGATAATCCCAGATTCCACGT---GCTTT a score=23337.000000 s hg15.chr13_random 355515 235 + 414659 CCTTTCACCTTTATT------ATCTTTGCCTTTAACTCTAGTGCTTCCTCCCTGAATCAGTTAAGGATTGCATTTGGCTGCATTAACAGAAACCTGACTGCAGAAGCTTAACCAAATAGGGTAGtt-tttaaagagagattgcttacatcacgcaaattgcacaaattttaag-tgcatagttcaatgagttttgacaaatgtagaataacatagctatataaaaccattccatcaaaaaaat s mm3.chr5 147077255 189 + 149719773 CAGTTCACCGCTCTC------ATCTT--------------------------CTAATTAGCCAGGGCTTACGGTCAGCCACTTTCACAGAAACCCGACTCCCCAAGCTTAGGCAAACAGGGCATTTATTTTTAGAGATGTTGTT----------------TGCGCATTTTAAA-TGCACAGTTCAGAGAATTTTGGCAAAT-----ATAATCTGGCTATTTAAAACCATCCCAGGTACAAAAT s rn2.chr12 39906094 212 - 46874691 CCGTTCTCCGCTCTTTTTTTAATCTT--------------------------TTAATTAGTCAGGGCTCACGGTCAGCCACTTTCACAGAAACCCGACCTTCCAAGCTTAAGCAAATAGGGCATttatttttagagatgttgttcgcctgttgtaaattctgcacattttaaaatgcacagtccagtgagttgtgacaaat-----ataATGTGGCTTTTTAAAACTGTCCCAGGTACAggac a score=8050.000000 s hg15.chr13_random 357830 65 + 414659 CTACACAACCCCCCAACCACAATGCTACCCCCACTCCTGTGGACCTTCTTTAAGAGAGACTCACT s mm3.chr4 47616972 65 - 152921959 CTGCTCACTCCTCTAACCCCAGTGCTCTGCAGGCCCCTGGGTGTCTTTTCTGTAAGAGACTCACT s rn2.chr5 53075213 64 - 191625135 CTGCCCACTTCTCTCACCCCAGTGCTCTGCAGACTTCT-GATGTGTTTTCTGTAAGAGACTCACT a score=72309.000000 s hg15.chr13_random 360521 426 + 414659 AGCCTGACCACATTAACAGAGTATATATTGCATGAAAGTGGTT-TAGTTCCTGTTTTCCTTTTGAATAAACTGGCTAAAAATATTACTGTTTGTGGTGTTAAATGGATTTCATAACTAACACAGGATGTGGCTAAATTCATATTACTGTGATAATTTTAATTGAATTTTCTGACTCCTACATGT----TTGTCAACTTTTAACACTGTATTAAACATAAGGTTCCAATGTTATTAATATGAAATGCTCACATTCCCTTACAACCGTGATTATATTTTGTT-ATCATTCCTGAATGTTGTATTAAGTCTATTTAAAAGATATCTCAAGAGACCCTTATATGTTTACTGCATTAGAAGAAAAACAGATGTTCTCACACATCCTGAGAGATAATACAATTTACATTGCGTATGAAGCTTGTTGAGAACCACTTAA s mm3.chr5 2632944 427 - 149719773 AGCTAGACCACATAAATAGAATACATATAATATTCAAGCATTTCTTGTTCCTATTTTCTTTCTGAATAAGCTCGCTAAAGATGTTACCATTTGTGGTGTT-AATACATTTCATAACTAATTCAGGATGTGGCTAAATTCATAGCACTGTAATAA-TTTATTTGAACTTCCTGGATCCTACATACTTAATTGTCAACTTTTAACACTGCATTAAACATGAGGTTTCCATGCTTTCAATATGGAACATCCACATTGTTTTACGCCTGTAATTGTATTTTGTTGATTATTCCTAGATGTTGTGT--CGTCTATTTAAAGTGTATCTCCTGAGACCCTTATGTGTTTACTGCTTTAGAAAAAAAGAAGATGCTCTCACATATCTTGAGAGGTAATATGGCTT-TATTGTACCGGAAGCTTGTTAAAAACTGCTGAG s rn2.chr12 6958179 419 + 46874691 AGCT-GACCACATGAATAGAATACATTCAGCATTCAAGCATTTCTTGTTCCCAGTTTCTTCCTGAATAAGCT----GAAGATGTCACCATTTGTGGTGCT-AATGGATTTCATAACTAATTCAGGATGTGGCTAAATTCATAGCACTGAAATAA-TTTATTTGAACTTCCTGGTTCCTCCATGCTTAATTGTCAACTTCTGACACTGCATTAAACATGAGGTCTCCATGCTTTTACTCTGCAAAATTCACATTGTTTTACGCCTGTAATTATATTTTGTTGGTTATTCCTCGATGGTGTGC--GGTCTATTTAAAGTGTGTCTCCTGAGGGCCTCATATGTTTACTGCATTAG---AAAAGAAGATGTTCTCGCATATCTGGAGAGATAATACGGTTT-TATTGTACCTGAAGCTTGTTAAGAACCACTGAG a score=1861.000000 s hg15.chr13_random 360947 112 + 414659 A--GATCTTTCTAGGTAGCCAG------AGGGTTTAAGTAATCCATAGCATCCGACAGCGTATCATATTAGAAAATTAGAAAAAAATGCCAATCACATTTTCCAAATGCAAAAGCACATT s mm3.chr5 2633371 117 - 149719773 ACGGATA---CTAGGTAACAGGGAGGGTGGGGTGTGTCTGAACTACAGAACCCCGCAGTGCTTGACACTGTAGAACTGAAATGAAATGCCAGTCACAATCCCAAAATGCAACCATATACA a score=2302.000000 s hg15.chr13_random 361059 16 + 414659 TAAAAATTATCCTCTA s mm3.chr5 2633488 16 - 149719773 CTAAAAGTATTTTCAA s rn2.chr12 6959435 16 + 46874691 CCAAAAGTATTTTCAA a score=4295.000000 s hg15.chr13_random 361523 66 + 414659 CATCGTCTCACTTCTCTAGAAGAAGCCAACAACCTATGACAT-------------AGCAAAAGATGACCCTGGAC---------------------------AATC s mm3.chr5 2633950 98 - 149719773 cTTTGT----CTGATCCAGAACAAGTGAATAATCT--GTCATTCAAAATGAGCTGTGCAAAAGACAGCCCCAAGCTTCTTT--TTCTCGTGTGTGATTTTAAAATC s rn2.chr12 6959885 98 + 46874691 --------ctctgATCCAGAACAAGTGAATGAGCTATGTCATTCAAGATGAACTGTACAAAAGACAGCCCTGAGCTTCCTTTGTGTGTGTGTGTGAGTTTTAAATT a score=1905.000000 s hg15.chr13_random 361589 19 + 414659 AAAATAGATT-AAACAGAGA s mm3.chr5 2634271 20 - 149719773 AAAATCTATTCAAATATAGG s rn2.chr12 6960210 20 + 46874691 AAAATCTATTTCAAGATAGA a score=14747.000000 s hg15.chr13_random 361608 134 + 414659 ATAGTCACTAAACAGTA-TTGACTCTTGGAAATGCCCTAACCAACCTGGTTATTTTATGAAGGATTGTAACAAGCTTAGTTCTCTGAAATCTATACCTAGAGCAGATAATAAGCAAGAAAGTAAGGAGAAATGAG s mm3.chr5 2634291 116 - 149719773 --ACTCACTAAACAGTATTTGACTCTTGGGAGT-CCACAAAGAGCCTCATTATTGTGTAAAGGGCTGGAGCAAACTGGAGT--------TCCATACC-------GATGATGAGCAAGAAAGT-AGGAGAAATAAG s rn2.chr12 6961051 124 + 46874691 --acaCGCTTAACAGCATTTGACTCCTGGAAGTGCCCTAGAGAGCCTCAGCACTGGGTAAAGGCCTGTAGCAAACAGAAGT--------TCCATACCTGCAGCCGATGATAAGCTGGAAAGT-GGGAGAAATAAG a score=36156.000000 s hg15.chr13_random 361742 466 + 414659 GAGAAAGATAC------AGAaata------------------tttgt-------------------------------------------------------------tgaatgcagctaaatgcaagcagccttacacatattatttaatc-tttatgacatccctttgaagcggtatgattatcccggtcct-cagatgaggttactgagacagagagaggtcaCGCCCTGTGAGTGCACCATGTGCATGCAATGAAGCTGAAATCCTAGCCTAGAGAGTCATCATTACATGACCaacaattactaacttttatggaatgttttctaggtataccagatac--agcactttatgtctattataactcttaattcttacaaaggactttaaatcaacctccattattgtcaccatgccatagatgagtgaattgaggcttggaaagtgtaggtccctttcccttcattgcacaactagctgacaactgagacaggactcagac-ccggtcagtgtgatgcctgagttcgtgggatttcaccacagcctgcactgc s mm3.chr5 2634642 484 - 149719773 AAGAACTGTACCTGAAAAGAAAGAGCGAGGGAACTGCATGGGTTCGTTAAAAGTTTAAGCAAAATAAAATTAAAAGGCTTAAAGCCTAAGCACATGGGAACAT-----GAAATTCAGCTGAGTGCAGTCAATCTTACACAGttttctttaccattaacaacaaccctgtgtgaggctgttattggccctgctttacaaaggaggatgctgagac-------------------------cacaCAAGGCATGCAGTGAAGCTGGCAT-----CCTAGAGTGACATCACTGCAGTGACGGCCATCGCTAACATCCA------------TGCACTTACTGTACACGGAGCACTTTATATCCATTTTAACCCTTGAGTCATACAAAGGTCTTCAAGCCAAGCTCCACTTACATCACCACACCATAGACAAGTACACTGGGGCTTGGGAAGCAGAGGTACCACTCT-------------GTAACTAACTACACAGAGAGAACCTGGACTCCATTCATTACAGACCGTGAATTTAT------------TAGCCTGCACTGC s rn2.chr12 6961403 475 + 46874691 GAGATATGGACCTTAAGACGAATAGTGAGGGGCCAGCATGGGTTCTTGAAAAGCTTACGTGAAACAAA--------GCAGAAAGCTTTAGCCACTGGGAACGTACACGGAAATCCAACCGAGTGTAGTTGATCttacatattttgcttcgctgttgacaacagccctgtgtgaggccatggttgaccctactttataaaggaggatgccgagaa-------------------------cacacaaagCATGTGGTAAAGCCAACAT-----CCTAGAGTGACGTCACTGCGGTGGCAGCCATCGCTAACATACACGGAATGTTTTCTGCGCCTGCCATACACGGAGCACCTTACATCCATTTTAACCCTTGATTTTTACATAGGTCTTCAAGCCAAGCTCCACTGATGGCACCACACCACAGACAAGTACCACAAGGCTCGGAAACCTTAGGTACCTTTCT-------------ATAACTAACTAGGGAGAGAGAACTTGGACTCC------------------GTTTCT------------AAGCCTGCACTGC a score=59109.000000 s hg15.chr13_random 365293 783 + 414659 AAACTCAGC--ATT-----------------------------------------------GCAGTGACATTCTTATCAGGCCATTAAGTGCTGATATTTTACTATTACTAT--ATATACATATTTCC--ATCACTTTGAATGCTGGATTCGGTAGCTAGGAAAGGA----CAGCCTTAGAGGTCA-AAGGCCACTTGCCTGAAAATAAGGTCCTGAAAGAAAAAAAACCAGAAGCCCAAGGGGATGATCATGTGTTATGAAAGGAAACTCTATGGAGGGCTTTTCAAAATGCCTCGG-CATCTGAACATATCCTCATGGGAAAGACCGCCCCAA-CACGAATGTGGCCTCCACAGGGTTTCAAGAGGAGTCATGGAAAAGGCAGCTGGGGCCATTTCCTGGGGAATGGGTGACTTCCCACCCCATAAGTGATGTCCCTGCCTCCCCATCCCA-CTGTGGGCCTCAGAGGTTCAAACTACCTGTTGCATCTGCATGGTGTGGACATAGAGGCAGCCACACTGAGGAGCAAGCAAGAAAGGGCATGCGGATAACCTTGACTCCCAGGGCCCCAGAAGGCACTCACCACCTTCACTCTGGCCACTGCAATGTGGCAGAACTATACTCCCAAAGCCAT--ATTGTTTATTAGAATaataagaaaactatcatacattaagcgcagtaaatgtgccaggcacgggaccaagtgctttgta--cccaatgtctcatctaacatggacaaaa-cccaataagacaggtattatattattgcccttttta------cagaggaagtgaagcttggagagcccc----aggaacttggccatagtca---tgtgacaagttaaagcccgg s mm3.chr5 2636898 727 - 149719773 AAAATTAGCTGATT-----------------------------------------------GCAGCAACA-TCTTAGCAGGCTCTCGAGGACAGATGTTCTTGTCCGACTATGAATATATTTATTTTCTTTTCACTTTGAAAGCTGGGTTTGATGGCCAGCAAGGGA----TCACTCTGGGTTTTAGAAGGGCACTTGCTTAAATGTAAACCCTTGA---AAAAGACCCTAAGATCCCAAGG-GATGGGGGTGGATTATGGGAAGACATTGCATGGCAGATCTTTCAGAAGCTTCTAG--------------------------------------CCAGACAGCAGCCTCCACAGGGCATC---AGTATTCATGGAAC------------CTCTGTGCAGTACCACAGCTAGCATCCTAAGCCACA-------TCCCATACACTCCAGCCTACCTGTGGA--TCATGGGTTTGTACCACCTCCCCACACAGAGTGGAACTGACAGAGAGTCACCCAAGCTCAAGACCAAGCAAG-AATGACAAGGAGATATTCTCAGCTCCCAACGTCCCTGAAGATG-CCACCATCT----TCTGACCA-TGCAATGTGACTGAACTGTGTTCTCAGAGTCCTAGAGTGTCCTTTAGAATaataataaaagtaacatcaaccaagcatggtaaatgtgccaggtacagtacctagtatttt-taaatccagtgtcacacgtggtatgtttgaaatctcggtaagatgggttctat-tacttaccctcttcctacacatgaagaaagggaaggtcacacagCCACTTTTGGGAAC--AGTCACAATCAGCTTTTAA------AAAGCATGG s rn2.chr12 6963273 761 + 46874691 AAAGTCAGTTGATTTGCCTGTGGCAGGAGAAGTAGACAGAAGTCATCCCGAACTCAGGCCTGCAGTAACG-TCTTAGCAGGCTCTTGAGGACAGATGCTCTTATCTGACTATGAATATATTTCTTTTCTTTTCACTTTGAAAGCTGAGTTTCATGGCCATCGAGGGACCAATCACCCTGGGTTTCAGAAGGGCACTTGCTTAAATGGAAACCCTTGA---AAAAGACCCTAAGATCCCAAGG--------------CACGTGAGGACATCGGACAGAGGATTTTTCAGAAGGTTCTAGACATCTGAACACATTGTAATTTGGAGGACCCTTCCTAACCAGACAGTGCCTTCTGCGGGGCTTC---AGTATGAATGGAAC------------CTCTGTGCAGGACCATACTTAGTGTCCTAGACCACA-------TCCCACACACTCCAGCCTACCTGTGGA--TCTTGGGTTTGTACCGCCTTCCCACACTGAGT-GAACTGAC----AGTTACCTAAGCTCAGGAACATGCAAG-AATGGCAAGGAGA---TCTTGGCTCCCAACGTCCCTGAAGATGCCCACTATCT----TCTGGCCA-TGCAATATGACTGAATTGTGTTCTCAGGGTCCTGGAGCATCCTTTAGAATAATAATAAAGGTAACATCTACCAAGCACGGTGAATGTGCCAGG------ACCTAGTACTTTATAGCCAGAGTGTCACA--------GTTCAGAGTCTCAGTAGGGTGGGTGCTCT-TACTTACCCTCTTCT---------------------TCATACAGTCACTTTAGGGAAC--AGTCACAGTCAAC-TTTAC------AAAGCATGG a score=25631.000000 s hg15.chr13_random 366082 434 + 414659 aagccaggctgccaggctccaaagccAGGGAAACCCAATTGTTTCTGAATGACC--AGGGGA-CTCAAGCAACCGGTCCAAGGTCACATATTGACCTGGAGAAGGAGCAAGGCAGTGAACCCCAGAGAGAGGACAAGCCTCCTATGTGTTGTGGTG---CCTCAGGACCTATCAGGAAATGATCTGGCCAGAGAGATGACCCCTTCCAAGCCAAGGGATAGATTCTCAGAACCTTGACACAGCTCTAAGCGG-------------GGAGTACAGTGGGTAATATGATAAGTGCCAGGAACGGAGTTGCCCGCAAAGGAAAATGAACACTGTGGCAAGCCCTAAGTTTCCCAACAGGAACCAGAGGCTGTAAGCTAAGTAAAGTCATT-CAACAAGTGCCCAGGGTGTGACGGCGTAAGCTTAGGAGAGACTGGTAGCCTTCT---CAGAGGCTACAG s mm3.chr5 2637777 399 - 149719773 AAAACATGGTGTTCAACACCAGA--------------------TCTGACAGACTTGAGTGGG-TTTAAACAACTGATCCAATGCCACGAG-GAACCTGGAGAAAGAGCAATG----------GGGAGAGCCAAGCACCCTCCCCCATACAATGGTTACACACCAGAGC-AATCACAAAGGAGTCTGGCAAGTGTTATCCCCGCCCCCA-G-CAAAGGATGACCCCTTTTGACTGTGACAGGAGTCCAACTGGAGATGAAAGCACAGAACTTCAGTGAGTGGCAAACAAACTGCCATAAACAGGGTTCTCCAATAAGTCAAGTG-------------------AGTCTCACAACAGGAAGCAAACGCTATACGCTGCAGGGAGACATTGCACCAAAAACCCAGAGCCTGGTGAC--AAGTTTGGAGGCAGTAAGTAGCCATCTT--TAAAAAAGACAA s rn2.chr12 6964025 374 + 46874691 AAAGCATGGCCCTCAACACCTCA--------------------CCTGTCAGACCTGAGTGGGGCTTAAGCGACTGATCCAATGCTACGC---AACCTGGAGAAAGAGCAATGTGG-------GGAGGAGCCCAGGAGCC--------------------CACCAGAGCCAATCACAAAGGAATCTGCCCGGTGTTATCCCCTCCCCCCCG-CAACGGAAGACCCCTTTTGACTGTGACAGGAGTCCCACTGGAAGTGAAAGCCCAGAACTTCAATGCGTGGCCAACAAGTGGCCATGAATGGGGTTCCCCAATAAGTCAAGTG-------------------AGTCTCTTAACAGGAAGCGAACAGTA-----------AAGATATCGCACCAAAAACCCAGGGCCTGGTGGC--AAGTTTGGAGGCAAGAAGCAGCCATCTTTGTAAAAAAGACAA a score=2481.000000 s hg15.chr13_random 366516 272 + 414659 ATGCCCCAGCAGAACGCCCACCAATGTTTCCCACATCTAGGATCTTCTCCCCTTTGAAGCATCCAAGACAGCCATCAGCAGGCTGAAGACTATGCGCTAGGTCCTGGCTCAAGAACTccccaccccccaccccccacctcccacctcccaccTCCACCAAGCTCTCTTGCCAG-CGGCCACCTCTCCTGGGCAGGAGCCAGAGGAATGCAGGGAGAACAGGAAAGAATGAATGATGCCCCCCAAAATGGAGCATCTGCCCTGGGCAATGACGG s mm3.chr5 2638482 235 - 149719773 aGACAATAAC----CACTTGTCAACGTTTCCCAGTCCAATG--CTTCTCCCACTCAAAGCAT------------TGTGAAAGCTGAACACCA-ATACTAGGTCC---CACGAGTCCTCCTAACACTGG----------TGGGAACTGAGAAGTCTGGCAGGAACTCCAGTCAGATGGTCACCTCTTTATGG--AGAGCCAGAGGCAGCCAGGGAGACCAGCAAAGAAAGGAGGAAGCCTAGAAACGTGAACTACTTGCTCTGGACAA----GG a score=41913.000000 s hg15.chr13_random 366788 606 + 414659 GATCCCTCTGGTTCTCACTCAAGTGGATGATGCCCCACATCGACCCGTCAGGTCTCCCTCTCCTGATCCTTCACCCTCAGACTGGGAAACCCTCTCAGTGAGGACAGAGATA-CAGCTTTTTCCTGCCCAACTGCCTTTCTCAGGAAAGAGTAGAAAGGATCACCCAGCTT--CCAATGGAACAGA----GAGATGCTGTCAGCTTTTTGTGAATCTCTGAGCACTCAGCTCAGGCCTTTTTTTTTTTTTTTTTTGAAAGTTAGCA--------CATCCATCACATCCCCTAATGCCTATTCGGCATCTGTTCTCTAAAGAGCCAGGGCTAGGAGTTACCTCC----AGGGGTAA--------------------CTC--------CTGTTATTTAATGCAAGGCAGAGAGT--TCATTTAG-TGTATGCTAGGAGTCTGACACCATAATTCAGATTTATGGAATAAAATTCTAGAAGAAATTTGGTTCAGAAACAGGTAGA-GTTTGATATAGATCCTGGGGCCACTCTAGCTGCCCAATACTGCTTCTGGGAGCCTCGGTTCTTAAAAACCACCGAACATGGCCCTGGGCCCAGGTCAAATTTGTAGGAGGCATGGTAGAAGATGCACACACATGCGC-------------------------------------------GTGTGCGCGCACACACA s mm3.chr5 2638717 614 - 149719773 AAACCCT---GCTCT---------------------ATCTGTGCTC------TCTTACGTCTCTGCCTCCTCGACCTTGCACTAGAGAAGCCCCACTATGAGGAGACCGAGAGCTGCCCTCCTCTGACCGCGCATCCTTTTCAAGAGAGAGCAGAAAGCGTTGTCCGGCTTTCCCCATTAAACAGACGGAGAGATGTTCTAAGCTGGCCAGGA--TTCTGAACGCCCTGCCAACG---------GTCTTTTCCCAGCAGGTTAGCA-----GCGTATCTGTCACCGCACCTCA----------GCCTGTGTGCTCTGCAAAGACAAGGAGGGGAGCTACCAACACCGAGGGGGTAGGGGGGGGGGGCGGGGGTTGCTCAGTGAGATCTGTCACTTCCTTCAAGACAGAGAGGAATCGGTCAGCTGTTTACTAGGAGTTTGACCCCAGAATTC------------------------AGGAACCTGGCTCAGAAAGAGATAAAAGTTGGAAACTGGT-TTGCTAGCGTTTTGGCTGCCAAAATCTGACGCTGGGAGTGGCTGCTCTT-AGAGCCATTGTATGTGGCCTTGGAACTGGATTG----TGTAAGAGACATAGTAGAATATGTATACACATAAGCACACACAGTTCCCACATGTGGAACAGACACACTCGTAACATCTATATACACACATGCATC s rn2.chr12 6964525 568 + 46874691 AAACACT---GCTCT---------------------ACATCCGCTT------TCTTGCG---------------------------GAAGCCCCACTATGAGGAGACTGAAGGCTGCCCTCCCCCGACCGTGTGCCATTTTCAAAAGGGAGCAGAAAACATTGGCCAGCTTTTCCCACTAAACAGA----GAGGTGTCCAAAGCTGGCTGGGA--TTCTGAACGTCCTGCCAAAG---------GGCTTTGGCCCGCAAGTTAGCATGTCCGTCACCCTGTCACCCCATCTCAAGGTTACTCAGCCTGTGTGCTCTGCAGAGA------AGGGGGCTAACACCAC--AGGGGGCA--------------------TTCAGTGAGATCTGTCACTTTCTTCAAGACAGAGAGGAATCGGTTGGCTGCTTACTAGAAGTCTGACCCCAGAATTC------------------------AGAAACCTGGCTCAGAAGTAGATTGA-GTTGGAAACGGAT-CTGTTAGCATTCCGGCTGCCAAAAGCTGCCTCGGGGAGAGTGTGCCCTC-AGAGCCATTGTGTGAGGCCTTGGAACTGGACAG----TGTAGGAGGCACGGTAGAATATGTATATGCATAAGCACACACAGTTTCCACATGTcacacacacacacacac-acatctatacacacacacacatc a score=7469.000000 s hg15.chr13_random 367394 75 + 414659 CACACATACCAGCACTGATGGCTTATG--TTCCCAATGTGCCCCAAGGTGCCAAAGGATTTCCCAAATTCAGAA-GTT s mm3.chr5 2639331 72 - 149719773 CACTCATAGCATCCCTGATGGCATATGCATAACCAAGGCCCCTCAGTGT-----AAGACGCCCTCAGTTCAGAA-CTT s rn2.chr12 6965315 73 + 46874691 CACTCATCACAGCACCGATGGCTCATGCATCCTCAAGGCTCCTCAGTGT-----AAGGTTTCCTTGGTTCAGAAGTTT a score=53743.000000 s hg15.chr13_random 367622 683 + 414659 GGAGATGAGAGGAGGTGTGA----GGGGGCAAAGGTGG-----------GGTGCAGGAATCAGGCCATGCAGAGCTGCCCC-TCCCTGGAGTCCGG-GCCCTTTCAACCCCATCTTTGCCAGAGCTGTGACCCCTTCACCTCCAAATGCCCAGATAATAGGAAGCAATTTCTGTCCTTTTTCTGAGTACCTCTTGCTTCACCAGCCCTCCCCAGACCAAACACACCCCAGACAAGGATGGGGG------CAGGTACAGTTTCCAACTGTGACATCGGGGCAGTGCAATGTCAGAG------GGCCAGAAGTTACAACATTATCTCACTTACTCATTTCCTTGTACCGTGCAGGGAGGAAGTCCCATAGACTCAAGTCTGTCGAAGGACAGTGTG-------GACACTTCCTCTTTCCTGACCTTTGTGTCACTCCACTTGATCTACC--TCCTACCCACGACCCTCTCTTCAAAGTCCCCGGGGCCTGATGTCCTGGCCCCTTCCC-CTCCTTGGGAAATTAATCCTTCCCTCCTCCACCACCAGTTCACCCAGCCCCCAGC------CCC----TTCTCGTATCTTGGAAAATCCAGCATCTCAGGCTTTGCTCGAACTCACACAGAGTCT---CTTTTGCCCAACCTTTGCTAAGTCAGGATTGGAGAAAATGGAAGGCAAAAAGGAAGATTAGTGAG-CTCATGCACACCAGCATGGCCAGAGAGAAGTTGGC s mm3.chr5 2639806 622 - 149719773 gggggttgggtggggtgggatggtggtggtgagggtgg-----------GGTTGAAAGGAGGGGC--TACAGAACTACTCCATACCCAGAACCCTCCGCTCCCACAGCCTGACCTGTGCGGGAGCTCTACCACCTGCCTGTTC-TGCATGCAGATGAGAGCA--CCATTGCCTGCCCGTTTCTGACTGTGCTGTCTCTCCCCAGCCTTCCCCACCCC---TGCTCCCCACGGGGGGGTGGGGGGTGGGGTAAACACCCTTATCTCCC----TGCAGAGCCAGGGCCGTCGCCGCG--------------GTTG-----TGGCCTCAC--------TTCCGTGTACCATGCGG-GAGGAAGCCCTGTTG--TTGGGTCTGT---AGGACAGTGAGCTGTGTTGACACTTCCTCTTTCTCAATGCCTGTG-----CCACTCGCTCAGCTTCTCCTA-CCACAGTCCCCTCCCTCAAGTTCCTGGGGCCTAGGATCCTAGTCCCTTCCC-----------------------CCTCCACCACCGATAAT--ACCCCATCTCCAGA---TGTCCCGTCCTTCCTGCATCTTGGGAA-TCC----TCTCGGGCTCGGCTCAGAGGCACACGTAGCCTCTCCTGTTGCCAGACATCTGC-----------CGGAGAAACAGAGTG----AGAGGAAGTTCTGGGGGGCTGACATA----GCCACAGCTGGAGGGAAACCGGC s rn2.chr12 6965917 649 + 46874691 ggtggt------ggttgtggtggtggtggtgatggtggtgtagtggtgAGGTTGAAGGGAGGGGC--TACATAACTACTCTGCACCTGGAACCCTT-GTTCCCACACCCTGATCTGTGCCAGAGCTGCACCACCTGCCTGTTC-TGTGTCCACGTGAGAGCA--CCATTGCCTGCCCATTCCTGAGGGCACTGTCTACCCCCAGCCTTCCCC-TCCC---TGCTACCCA-----GGGTGGAGG------TAAGTAAACTTATCTACC----TGTGCAGTCAGGGTTGTCACAGTGTATCAGGACCAGGAGTTGCAACATTGCCTCAC--------TTCCGTGTACCATGCAG--AGGAAGCCCTGTTG--TCAGGTCTGT---AGGACAGTGTGTTATGTTGACACTTCCTCTTTCTCAATGCCAATG-----TCACTTGATCAGCCTGTCCTA-CCACAGTCTCCTCCCTCAAGTCCCTGGGGCTTACGATCCTAGTCCCTTCCCTCTCTTTAGGAAACAAACC---CCCTCCACCACCATTAAT--GCCCCATCTCCAGAAGATGTCCC----TTCCTGCATCTTGGGAAATCC----TCTCAGGCTCTGCTCAAAGGCACACGTAGCCTC--CTGCTATCAGACATCTGC-----------TGGAGAAACAGAATG----AGAGGAAGTTCTGTGGG-CTGATGTA----ACCACAGCTGGAGGGAAACTGGT a score=156924.000000 s hg15.chr13_random 372871 2240 + 414659 tgtttgtctattcctttagactgtaagatcct---agaaagtgggggccgtgccttgctcatgactgtgtttctaacaccaaacacaatgttcagtagagagcagctgctg-agtacgtttctgctaaatgaCAGT--TGAT--GGAGGACATTTAGGGTTGCTTGGAGGTCAAGTCAAGGAGGCATT-TAACATTCTAGTAAAACA---AGGAAGTAA--CAGGCTCCTGAACATGCCCACAATGAACCAGATGCAAACCTTTTCCCTTGGCAGGATTCTTTGCCCATAAAGTGGAGCACGAAAGCAGGACCCAGAATGGGAGGAGCTTCCAGAGGACCGGAACACTTGCCTTTGAGCGGGTCTACACTGCCAAGTGAGTCCTAAACCTGATGTTGCTAA--TAA--GTGGGGGCATGGGCAGGGGGGCCTCCTTCTAGGAGTGATGACCACCCTTAATACCACATGTCTGTCTGAGCCAAGCTTCTGAGCGCCAGGGAGGTGAGGAAGGTTGGACTTCACCAGAGAGGCTTTGTGGACACCCTTTATCATCTTAGTGAGTGCTAGTGTCAAAACAAAGGGAGTGGGGATATGGGGCACATTGGTGGAGGGAGGTGTGATCTCTGCAGCTTCAGAAAGATCTGAAAGAGTCATTTGGTTAGAGAAGTTGACCTATTTCCTGTGGGGTTAGACCAGGGTTGCTACTGTGAACACCAGCCATGACTCACCAGTCACCTTCAGAA-GCCACAGGCAGGACATGCTGACGACAGCCTTCAACTCACCCACC---CCTTGCTCCCCTGCGGGTGGAAGTCTGGAGGTGACACCACTGCATTTTCTAACACGGGGGCTC-CTTGAGCAACTAGAACAAGAACAGAAAGAATGGGGACATTAGCAGGTGCTTTCCCCCTCTCTCATTCTTTTCTTTGAATAAAAAGGTTGTTTGAAAACACCTGAGCGGCTCCTAAAGATGGGT-----GCAATCTATTCGGGATGCAAATCCGAATGAATGTTATTCAAATGCTCCTCTCTTCTTTATGCAGAGTGTATTTCAAGGCTCAGCCAGTGGCAGGCATGCTGGGGACTATGGACTACGGACTAGGGGCCTGTCACAGAGGAAGGCCTCATGC-----TAGAGAGCTAAGGGAGGAGCTGGCCTTCAGTTCC-ATCCCAGGAGCAACTTTGATGTTCCCAGAGATCCTTCCAA-AGGGGGAGTCATGGTCACCCAAGAAAAATGTATTCAGAATGCCAAGAATGGTGCAAACTCAGGACAAAGATTCACACTGCAGGGTTGGAGTCCCTG------GG-----CTTGC-----TGCTGGCACCATG---GGAGGGAGGGTCCCCTTCAGGGGTACCGTTGGTTTCCTGTGAATTAAACTGGCTTCAAGGGATCTCGACTGAACAGGCCTATATCACACTCACTGATATACTCTCTCTTCAGTCCTTCTCCT----CATCTAGGTATTTTTAATTGTTTCAGTGAGGTG-TAGGCATGAGGGG-ATTGGAGGGGGCATCTCCTCCATTGCAGTTTTTCA---TTGGCTGCTTTGCTCCCTCAGCTCCGAAATCGCTGGGCCAC---TCTCGAACGCATTAGTACGGTAGTCACAGGTTGATTGCCTGGCCCCTTGCCCTCTGTGGGCATTTTCCCTCTCAGACTGCCCCTGAGTACTCACAGTGCTGCTACAGTGGGCCACCTAGATCTCCCTCTTTCTCCATGCTCCCACGTGCTCTGGGCTCCACTCCCTTCTCCCAAGCACTTCTGTCCAGGGCTATTCCAGCAGTCTGACCTCAAGGAAATCCTTTGCTAAACTGATTATAGAGAGGTTTCTATTTTAACATTTAGGCCTTCCATGTATTAATTCTCAGAATCAATTTAAGATGTTTAAAGGTGTGATTTAAGA--CATTTTAAAACCATTTGGAGGAGAGTACAGA------------AATTATGTCACTTGCTGTCAGCCTCTTTGCACCA----TCTGCAGAGAAAGATACTAGAGTCCCG---CCTTGGACACATCCACATGCAAGAGGTGCAAAGAAGGTGTCTTTGATGAGG--CAAGGTCAAAACTCCTCCCCAGACGAAATCCAAAGAAAGCATTCCTACTATG--CTATATCAGTTTGGAAAGAAAAA----CTTCTGC-CAGGTGACTGCATTCTCACTGGTCACATTGTGTTCCTATGGACTCCTC--AGCTCAACCAATTTGGAGAAGTTATGGTGCAATTTCACC----------------------ATATCTGGCTAGAAGTTAAGTTTCCAATTTGCTGGCAATGAAGAAGAAATGGAGCAGGCCAGGCTG s mm3.chr5 147104452 1954 + 149719773 TGGTTGTCAATATCTTTCAACTGTGAGTTTCTTAAGGCAAATTGGTGACACTCCCG-----------------CGCCACCAAATGCA----TCAGTGAGGGG-----GCCT-GAAACATTCTTGGTGAGTGACGTTTCTGGTAGGGAGGATGTGGAAGAC----TGGACAGCAAATCCAGGAAGCATTACAATGTTTTAGCAAAACAGTTAAAGAATGA-tctctctctctctctctctctctctctctctctctctatctctctctct---ctGTGTTTTTTGCCCACTATGTGGAGCATGAAAGCAATGCGCATAATGGGAGAAGCTTCCAGAGGACCGGGACTCTTGCCTTTGAGCGGGTCTACACTGCCAAGTGAGTTTAAACTCCGGTGCTGCTAAAATAATGGTGGGGACATGGGCATGG------------CGGAATGA-GACTATCCCCCATGCAATA--TCTGCCTCTGCCAACCTGCAGAGTGTTCAGGAGGCAGG-------------------------CTGCTGGATGCCCTTCCTCATCTTGGTGCTCCCTAGTCTTAGAG-GAAGGAAGTGTG---ATGGGGGA--------AGGGGAGGTGTGGTCTCTATGATCCAGTAACGCCCTGGCAG---CCTTTAGTGCCTGCA-CTGACCAGTTTCCTGTGGGTGTTGA-----AGCCCTTCAACTCAAGCCAGATGT---TCACACAGCAGCTCAAGAAAGT------------------------GTCTTCCACACACCACCCTGGGCTTGTCC-------AGTGGTGGTCTGGA--TGACGTCACTGAGTTTCATAACAGGGGGGCCC-CTTGAGCAATCAAACCGAGGACAGAAAGGCGGAGGCTCTGAGCAAGTCC---CCTGCCCTCTTGCCTTGACTTTTGAATAGAAGAGCTGTTGGGAGACACATGAGTGGCTCTGGAAA-GAGGTTTGTGGAGTTCTACTTGGCTTGCAAACCTGAAGTGACATGAATCAAACATGATTGTCCTTT---------AAGTCATCTTGGGGTCAGCTA--GGCATACCTGCCGTTA-------------------------GTCAGAAGGACAGGCTCCCCGCTTTGATAGAGGGCTACCTTGAGAGTGGG-TGTCAGTTCCAACCTCAGGAGTGAATTTGATTCTTCCTAAGGTACTTTCAAGGGGGGAAATCATGGCCA-CCGACA----------------------ATTGGACCAAACTCAGA---GAGTTTCTCTAGGAAACTCAGAAAGCCCTT------GAGGCCCCTTCCAGATGTGTGAGCAGCCAG-------TGGGGCTCCCACTCA--GCTACCCTTTGCTCCCTGTGGACTGAAGGGATT--GAGGGATGAGGATGAGACAGA----------------------GCTCTCAGGCGAGCATGACTTCT----CATAGAG---------ACTCTCTCTGTGAGGTGTAGGGCATGTGTAC-ATCCCAGGTAGGGTCTTCTCCATTGAGGTTCCCCAGCTGGGGCTCCTTTTGTCCTTAAGCTTATAAATTGATGCACGCCTCATCTGGAACAC-------------TCACAA---------------------CCATCCTAGGAA----CCTCTTCAGATCATCCCTGGATGTTCAC------------------------------------TTTCCA---TCCCAC------------CTGCCCACTCTTCCTTAGCAGATACTCCTA--------CCAG---------CTTAAGGGCATCCTTTGCTGCAGGGTCCACAGGGAGATTTCTTTGTTACCATCTAGAGCTTGGCTTCCCTAATTGTCAATGTCAATCTAAGGCATTCAAAGAC----TTTAAGAGGCATTATAAATCCATCCgaagaagaagaagaagaagagggagaTGACTATGTAGGTTGTCACCAATGTATTTGCATCATCCTTCTGTGGAGATA-ACACAAAAG----GGTCCCTGGGAAATGT-CATGAGCGGGAGATAT---GAAGATATCTCTGATCAGGGTTGGGGACAAAATTGCT--------------CAAAGAAAA-----CCACCACAGACTCCAGCAGCGGGGGGTGAGTAGTGTCCCTCTGTGCAGATGATTACTTTCTCAC-AGTGACCCTGAGATTTTATGGACTCCAC--CCCTCCACC------------CGCCTGTGTGTTGTCCCCACTCCCCACCCCCTGCCCACATGCACATTCTTAGAAGCTGAGTTTCCACCATACTGGCAATGGGCAGTGAATGAAGCAACCCTGGGTG s rn2.chr12 39935788 1899 - 46874691 TGGTTGCCAATATCTTTCAACTGTGAGTTTCTTAAGGCAAGGTGGTGCCGCCCCC--------------------CCCCCCCACGTA----TTAGTGAGGGG-----GCAGAGATATATTCTTGGTGAGTGACATTTCTGGTTGGGAGGATGTGGAAGCCGGTTTGGACAGCAAATCCAGGAAGTATTATAATGTTTTAGGACAACA---AAGAACTGActctctctctctctctctctctctctctctctctctctctctctctctct---cAGCATTCTTCGCCCACAAGGTGGAGCTTGAAAGCAAGGCGCAAAGCGGGAGAAGCTTCCAGAGGACGGGGACTCTTGCCTTCGAGCGGGTCTACACTGCCAAGTGAGTTCAATCTCCGATGCTTCTAAA-TAATGGTGGGGACATGGGCACGA------------AGGAATGA-GACTATGCCCCATGGCACA--TCTGCCTCTGTCAACCTTCAGAGTGTCCAGGAAACAGG-------------------------CTTGGGGATGCCCTTCCTCATCTTGGCGAGCCTCAGTCTTAGAG-GAAGGAAGTGGG---ATGGGGGA---------GGGGAGGTGTGGTCTCTATGATCCAACAACACCCTGGCAG---CCCTTAGTTCCAGCA-CTGACCAGTTTCCTGTGGGTGTGGA-----AGCCCTTCAGTTCAAGCCAGCTGT---TCACACAGCAGCTCAAGAA-GT------------------------GTCTTCCACACATTGCACTGGCCTTGCCC-------AGGGGCAGATTGGA--TGACGTCACTAAGTTT-GTAAGGGGGGGGCGGGCTTGAGTAATCAAAATGGGGACAGTAAGGCGGAGGCTATGAACAAGTCC---CCTGCCCTCTTGTCTTGACTTTGGAATAGAAAAGCTGTTGGGAGACACACGAGTGGCCCTGGAAAAGAGGTTTGTGGAGTTCTACTTGGCTTGCAAACCTGAAAAGACATTTCTCAAACCTGATTCTCCTTT---------AAGTAATCTTGGGGTCAGTTA--GGCTCGTCTGCCAGTA-------------------------GTCAGAAGGGCAGGCTCCCCGCTTTGATAGAGGGCTAACTTGAGAGCAGG-TATCAGTCCCAACCCCAGGAGTGAATTTGATTCTTCCCAAGATACTTCCAA--GGGAAAGTCATGGCCACCCAACA----------------------ATTGGATTGAACTCAGG---GAGTTTCTCTAGGAACATCAGGACGCTCTGTAAGAAGAGGTCCCTTCCGGATGTGCGAGCAGCTTGGTGGGGTGGGGGGTCCCACTCA--GTTA--------TCTTTGTGGACTGAACTGACT--GCAGGA---------------------------------------------ATGAGCACACCTTCTCTCGCATAGAG--ACCATTCACTCTCTCTGTGAGGTG-------TGTATTCAATCCCAGGTAGGGTCTTCTCCATCGACATTCCCCAGCCTGGGCTCCTTTTGTCCCTAAGCATCTAGGTTGATGCACACCTTGTCTGGAGCAC-------------TCACAG---------------------TCACCTTAGGAG----CCTCTACAGG--ACTCCTGGATGCTCAG------------------------------------TCTCCA---TCCCGA------------CCACCCGCTCTTCCTTAG---------------------CAG---------CTTAAGGGCAACTTTTGCTGCAGCGTCCACAGGGAGA-TTCTTTGTTACCATCCAGACCTTGGCTTCGTTAATTGTCAGTGTCAATTTAAGGCATGAAAGGAC----TTTAAAAGGCATTATAGACCCATTTGAAGAAGAACAGGGA------------GACTATGTAGGTTGTCACCAATGTCACTGCACCATCCTTCCGTGGAGATA-ACACAAAAGGCTCGGTCCCTCGGAAATGT-CATGAGCGGGAGATGT---GAAGATATCTCTGATCAGGGGTGAGGACAAAATGGCT--------------CAAAGAAAA-----CCACCACAGTCTCCAGCAGT-GGGGGTGAGCAGTGTCCCTCTGTGCAGATAATTGCTTTCTCAT-AGCGACACTGGGGTTTTATGGATTCCACAGTCCTCCACT------GAGAAGCCACAGTGGACCGGCCCC---------------------CACACATTCTTAGAAGCTGAGTTTCGACCATGCTGGC-ATGCACAGGGAGTGGGGCAGCTTGGACAA a score=23394.000000 s hg15.chr13_random 375111 247 + 414659 TGTAGTT--------TCTGCCACGTGCCCCCGGGAG--TGAACAGCTCTGTTTGT-----------AAGAAGCCATGGTGCTTAGACCTGGGCTTGCTAGTTGCCAGCCTCCAAATTGCAGAAGTGCCCTTTGGTTGGTGGCTATGCTGTGTCACTTGGGAAGGTCGTTTGGAAGTTCCACAGTCGTTGTGGGGTGCCAGAGATTAAAAAGCGTAAGAGGAGAGTGGAAAGTGATTGTTGCTGCTTGGGCATCCCCACCGTGTGGGTG s mm3.chr5 147106788 224 + 149719773 TGTCGCTATCTCACGTCTGTCACTTGCCCCCAGGAGAGAAAAAAACTTTGTTTCT-----------ACAAACCCAGGGTTCCT-------------CTGGCTGCTGGCCTCCAAATTGCAGAAGTATC-TAAGGCTGGTGGTTGAGCTGCATGGCCTGTGGGAGTGGTTTAGAAATTCTATGATGGTGTGGGGGTTCCAAGGGTAagaagatgtgctaggttagcgctgagtgattgttg-tgtttcggg------------------ s rn2.chr12 39937830 234 - 46874691 CATAGCCATTTCATGTCTGTCCCTTGCCCCCAGGAGA-CAAAGAGCTTTGTTTCTGAGTCTGGGGTATTTACACGTGGCTCCT-------------CTGACTGCTGGCCTCCAAGTTGCAGAAGTATCCTAAGGCTGGTG-TTGAGTTGCATGGCCAGAGGGAGTGGTTTAGAAATTCTATGATGGTGTGGGGGTTCCAAAGATAGGAATATGTGTTGGGTGAGTGCTGAGTGATTGTTG-TGTTTGGGG------------------ a score=43539.000000 s hg15.chr13_random 375358 427 + 414659 CTGCAGCCCAGCTCTCAAAACCCATGGGTCTGTA-CACTCAACCTCCATGAGAGG-GAAGGAGAAGGATGAGGGAGGGGAGAGATAGCCATGGAAAGGTAGGAACTAAGCAGGCAGGGTGGAAAGTTTTCTGTAAGACAAAAACTGTCTGGACACTGCTGCGGTTCTGTTACAAAGACCACTTCCTCCCTGGGCCAGCAA-CATATCTGTGTGCCTGTCTGGGTTGTAAAAAGGGTCAAAGATCAATGCAGCAGGCAGCTACATGCTGGCAAAAGCCAGAGGCAGCTGGTCTGTTTGCCTGTGCCAGGAAACCACTGGGAATGGGGTTGTGTGTTATTCTAGGAGAAAGTCGTCCCAGCAGCAGCTTCTCCAGGGGCATCCAAGAGCACTGAAAAGGGTtgcaagatgacccatga-ggctgcaggaagaa s mm3.chr5 147107116 379 + 149719773 ttgtagcccagttttcaAAATCCACGAGTCTTCATCACTCAGCCT---TGTGAGGTGAAGGAGAATAAGCAGATAGGGAAGTCGTG--TGTGGAGAGGT---------TGGCGAAGGGAAGAGAGTTTTCGATCAGATAGGGATTGCTCAGACACTGCTGTGGTTCTGTTG--AGGACCGCTTCCTCCTTCAGTCGACAAGCACTTGGCCACGCCCATGGAGGCTGCGCAAGAGGCTGGAGATCTGTGTAGCCGG-------ATACTGGC---------------------TGTCTGCCTATGCCTGGAGAACACCAGGAAGGCGGT--GATGATATTCTAACAGAAAGCCACAGCAACAGTCTTTCCTCCAGGGCCCTCTAGAAGAGTCAAGAAGAGGTGGAGGA------ACAACAACAACAAAAAGGA s rn2.chr12 39938380 406 - 46874691 TTGCAGCCCAGTTTTCAAAATCCATGAGTCTTTACCACTCAGCCC---TGAGAGGTGATGGAGACTAGGCAGACAGGGAAGTCGTG--TGTG-AGAGGTAGGAAGTAATGACTCGGGGAAGAGAGCTTTCTATCAGATAGCGACTGCTCAGACACTGCTGTGGTTCCATTACTGGGACTGCTTCCTCCTTCTGTCAACTAGCACTTGGTCATGCCCACGTAGGCTGCATAAGGGGCTGGAGATCTGCATAGCAGG-------ATACTGGCAAA--CCAGGGGTACTCTGGTTATCTGCCTATGCCTGGAGCACACCAGGAAGGTGAT--GATGATATTCTAACAGAAAGGCACACCAACAGTCTTTTCT-CAGGCCCCTCTAAAAGCATCCAGAAGAGGTGGAGAA------ACAA-ACAAACAAAAAGAA a score=1861.000000 s hg15.chr13_random 375785 28 + 414659 aagaacatgcatttaatcttgctatctg s mm3.chr5 147107722 28 + 149719773 AAAAGCATGCATTTAATCCTACTATTTA a score=32662.000000 s hg15.chr13_random 375813 430 + 414659 aaaagtaagacatgaagctttcctcatttttaatatacacatggacagtagtatgtgtatatagtttatat-gcaaatatacttgttataaggttgcatgctcaaaatttttggttcatggggtgtgggatcataaatgtttagggaccaTGGCTATCAAGGAAAAACAGCATGAAGGATAAATGA----TACTGGCGGATTAAAAAGACAGATGCATGTATTTTT-AGCATAAAACACAACTGCTGACTGATACAGATAGCTCAACATTCTGGGGCAGCTGCTGAACAGATACACTAGCC------AGTGTGGCTCATCGGCTCAGACTTGGCCTTAATTAATGGGCTGTCCCTCCACCCATCTCCCATGAGGGCAGAGCTGAGCCAGGGTTTGAGAGCTAAAAGGAATTGGACCTGGACTCAGTTCACGTGTATATTTTA- s mm3.chr5 147107750 346 + 149719773 AAACTTAAGATGTGAAGTTGTACCTGTTCT-----TACAGAATGACAGT----ACTGTACACAACTTACCCCACAAACATATCTGTCATAAGCTGTAAAACCCAGA--TTTTG-----------GTAGGATCATGAATATTTTGAAATCTTGGCTA----------------TGAAAGTCAAGTGATATCTACTGATGAACATAAAAGCCCAAGGTGTGTTATTTTTAGCATGAGCTATGACCTTCACGGGATATAGCTAGCTTGAGAGGCCGGG-------CTTAACAGATGCCCTAGCCAACATCAGTGCAGTTCAGCAGGTCAGAC--ACCCTTGACTAACAGCCTGTCTGACCACCTGTCTTGCTCTAG------GCTG-----------------------------GACCTTGACTC--------------TTTCA- s rn2.chr12 39939258 397 - 46874691 aaaCTTCAGACTTGAAGTTGTACCTGTTGT-----TATAGAATGACAGT----TCTGCACACGACTTATTC-ACGGACATATCTGTCATAAGCTGTAAAACCCAGA--TTTTG-----------GTAGGATCCTGAATATTTTGAAATCTTGGCTACGAAGGAAAAATAACATGAAGGTCAAGTGATATCTAGTGACAAGCACAAAAACCCCAGACATGTTATCTT-AGCATGAGCTATGACTGTCAAGGGATAGAGCTAGCTTGAGGATCTGGGGCCATGGATTAACAGACACCTCAAACGACATGAGTGTAATTCAGCAGGTCAGGC--GCCCTTGACTAACAGCCTGTCTGACTACCTGTCGTGCTCGAG------GCTGTGTTGGAACATTTGAGATAAAATGAGCTGGACCTTGACTC--------------TGTCGA a score=32079.000000 s hg15.chr13_random 376552 428 + 414659 ATGTATAAAACACAGTTTAATGT-CCTATTCCCAGCCAATGAGCATGGCTAGAGCAGCCTTGGTCAAAGTTTGGTTTTTGGAGAAAAATCCTTGTTAGCTGACCT---AAGATTCCTCTTTGTGAGTGTAAGTAAGCACAGGTTGCAGAGAGGAGAAGGGTCTCTGGAGAGGTGTAATTTTCTAAA---------TGGATTACAAGTTCATGGACTTTTAACAGGTGTTACAGGGGATAACAAGTTCTTTAT----AGAC---AGACTTTTGAGGACGTTTAAGGGTATTCTGATTCTTGGTTTTCTAAGAGGGGAATGTATTATTTAACTACAGA----CACCCCTACCGCCCACTTTTTGCAGAGTGTATCAAAACATGTTTTTGGAA-TACCACCCTCATGTCGCTTCTCCCTGCATCTCTTATCTCTTGGTGTCCATTCTAGACTCACT s mm3.chr5 147108096 404 + 149719773 GTGCAGAGAATGTAGTTCAGTGCCTCTGGTCTTGGCACATAAGCTCAGCTAGTGA-GCCTGTGTCAAAGTTTGG--------------------TTAGTTGACGG---CAGGCTCTTCCTTGTGAGTATGGATAAGTGTAGGTGT--GAGCTGAGACAGGTGTTCAGAGATGTGTAATTCCCTGAAGTGTGTTCCGAGATTCCAAGTTCATGGGTCATTAACCAATGTTACAGCAGGAAGGAAGTGCTTCCT-GTGGTACCCGAGACGCTCCAACATGCTAAAGACCGT--------CTACCTCACCACGAGGGG-GTGTCATAATTAACCACAGTGGCTCCCCCTTCCTCCTCACTTTT-------TTTGTCAGTACACAGTCTGAGAAACGTCACGCTAATGTCACAATAC------TCCAGCCCCTCTTGGTGTCCACTGGGAGCTCACT s rn2.chr12 39939655 409 - 46874691 GTGCACAGACCATAGTTCAGTGC-TCTGGTCTTGGAGAATAAGCACGGCTAGTGC-ATCTGCGTCGAAGTTTGGCTTTGGTAGGAAAA----TGTTGGTTGACTGTCACAGGTTCGTCCTTTTGAGTACGGATCAGCGTAGCAGT--GAGCTGAGGCAGGTGTCTGGAGATGTGTAGTT----AAAGTGCACTCTGTGATTCCAAGTTCATGATTCATTCACATACATTACGGCAGAGAGCAAGTGCTTCCTTGTGGTACCCAAGAGACTCCAACAGGCTAGAGACGAT--------CTACCTCACCAAGACCGG-GTGCCATAATTAACCACAGGGCCTCTTCCTTTCTGCTCACTCTT-------TTTGTCAGAACACA----------TGTCACCCCAATGTTGCAATGC------TCCAGCATCTCTTGGCGTCTGCTGTAGGCTCATG a score=38227.000000 s hg15.chr13_random 377301 396 + 414659 TTTCAAGTGGCATAGACTTGTAA------------AATTATTTAAAGGTGATAGGTCTACAATGATCCTGTCAATTAGTATTGACACTATTATTAATAAACTGTTATTAATTATATTTACTTACTTTAAATTAATCCAAACTAATTAACGGAACACTAAAGAGTTTCTATGTT---TTATTCCCAGAGGT----GGAGAAAAATGAAAGGGAATATAGCAACGAATTCTTTTCTCCATAAAAACATGAATAGTGCAGCACATCAAGTTGAACATACCACAGCAAATTGTTGCAAGATCTGCTGAGTAGCTCCTATTTAGACCTCAAGGAATGAGACTCAAAATGGGTTCATCAGTTCTGTTTTGCAGAAAA-----AATAGCGCAA--AATTTCTCAAAAGAAAATCCAGAATAATAATAAT s mm3.chr5 147108500 391 + 149719773 TTTCAAGCAGGGTG---TAGTAATGAAAAGGGTATAGTAATTT--------TAAGTCTGCAAGGAGCCTATTGGCTGGTGTCGATAGTATG-----TCAACGGTG--TCCTGGTATTTCGTTACCTTAACTTAATCCAAACAAACTAACAGAATTTTAAATTGTTCCTCTATT---ATATTTACAAAGGTTGGGGGGGGGGGAGGAAAGAGAAGGTAGCCTCGG-----TCTCTCTAC-AAAACAGGCAGATCCTGGCACTTCAGCTTGAATACAGCGTGGCGATTTACCGCAAGACCAGCTGAGCAGATCCTGGTTAGGCCTCGAAG--CGAGAGTCGAGATGGGTTTGCCAGTTTTGTTTTGAAGAAGAATAGGAAAGATACAA--ATCTATTCAAACGGAAAAGAAATGTAATAGTAAT s rn2.chr12 39940064 382 - 46874691 TTTTAAGCAGTGTA---TCGTAA------GGGTGTAGCAATTT---------AAGTCTGCAAGGACCCTACTGGCTGGTGTCGATAGTATG----ATTAGCTTTTATTCATGGTATCTC-----CTTATCTTAATCCAAACAAACCAACAGAATTTTAAAGGGTTTCTCTATTGATATATTTCCAAAGGT---GGGGAAAATAGGAAAGAAAAGGTAGCCCAGGG----TCTCTCCAC-AAAACAGTCGGATCTTGGGGGTTCAGCTTGAAT---TCTTGGAGATTTATCATAAGACCAGCTGAGCAGATCCTGTTTAAACCCCAAAG--CGAGAGTCAGGATGGGTTTGCCAGCTTTGTTTTGAAAAAGAAAATGAAAGATACAAATATCTCTTCAAAAGGAAAATAAACACAATAGTAAT a score=76147.000000 s hg15.chr13_random 378698 1148 + 414659 TGTAGGGGCCTCCTGCCCTTTGGAGCTCCTACCGTGTCCATTAGATCAGTGGAAATTCTG-GGATTCAGAGCACTTTGC-----AAGGTCAGCAGGGGTCTGCTCTTTCTGTCCTGTTCCTG-GTTTTTGGTTGTGCCTGGATTCCAGGGTAGGTTTCTCATCTGTTACCTTCATAGACTTCTCCAGAAAAGGATCTTTTGACCATCAGAGGACCACGAAGATTCCATTGGTGAGGCGCAGATAACCTGATCTCTCTGGGTTCTCTGCA-----GGGCACAGATGAAGGGCTGGCCATTCCCAAGTTCTCAGTGGTACCACTGAGGCATGAGACCCTAATGGTTTGCATGAGCAGTTTGAAAATTGCATCTTTGTTTTTACCTATATAATCACATGAAACCC---------gtggttctcaaacgtcagcaggcatcagcatcacatggagggcttgttaaaac--agatttctgggccccaacacagagttttaaattctgaaggcctgaggtgggcgtgaacatttgcatttctaacatgttctc-gatgctgctgccgccgctggtcccgagagcatgcctggagaacTGCCACCTTCGaccatggactgtgagaattcacatggacctcagaattataatcagtctctcagttttacagataaggaaactaaatcca----gagagattgtttt-------gccaatggtgaacagctggttaaagtc-aggatggagactttaatcctagtcaagtgacctttcctCTGTATTTATTTCCCTCCCTTTTTATGCCTCTCAAGTCTAGTTACACTGTTT---------------TTCATGGATGGGCATATTTAT-------TGTCCTGATCT------------GGACTGCAGACTTCTCAGGAGGACACCTATGATTTAATTTagtatagttgaagagttaacagacatggctttggagac-agactgattatggtgtgaatcccggcttt--------gccactccctagctggatg----------------------accctgagcaagttatt----cagcttctccaagcctgagttccttattggaaacatgagagcaattgtgataggcagaataatggccccctcaccaatcatgcccacatcctaatcctaggaacctgtgaatatgttatgttacatggcaaggggaaattcaggcagctagccagttggccttaaaataaa----------------gag----------attatcctggat s mm3.chr5 147109497 1077 + 149719773 TGTAAGGACCTCCTGCCCTTTGGAAGT----CTGTGTCCGTTAGACCTATGGAACTTGTGTGGATCCAGACTGCCAGACCCCATAAGGCCAGCAGGGTTCTGCTTTG--TGTACTG---AAGTATTTTTAGCA----CTGCTTTCTGGGGGG--------ATC------------------------------AACATTTAAC----------------ATATGCCAAT----ATGCA-ATATA---CGAACTATATGGGGTTACTGTACCCATCCTCA-----AAAGAGCTGAC----------TTCTTATTGG---CTCTGAGACATGAGACCCTAGCA------AGAAGCAGCCTGAACATTGCATTTTGGCTTTTAAATGTATAGCTCC---AAACCCTGTTTACcaatggctctaggattgcatcatgta-ctgaaccacctggaatgcttgctgaggcctaggttgctgtggtcc-ttgcccagtttctaacaccacacat-tgaggt-agcacaggcatttgagcatccagtaagccctcagatgccgtgggtgttgctgggatggggcccacct---gggaacctctgCTTTACACCACTGACTT---AGCCTCAGAGAGG---CACAGTTGCTGCCACACCCTTCGTTTAGTGAGTGAGGAAACTGAACCCACCCAGAGAAATAGCTTT--------------GTTAAAGTCTTGCCAAGGACAAAGACGGAG---------CCAATCAGCCGTTCTTCACACAGT-CTCATGTTGCTCCCCAAACACTTCTCATAG-GTTTGTTCTGTTGCTTTTGCGTATTTACATATTTGTGAATTTGCATATCTACATATTTACATATTTGTTTCATTCAGTGGAAGGACT--AGGCTGCACCCAAGGACACTTACTGTTTA------CACAGTGAAAGATCTC----TCAGGGGTTTGGAGACTAGACTGGC--AGGTGTGAATTCTGGCCTTCCTCAGTCCCCATCCC-TAACCGGGGGTGGGGGGTGGGGGAATAGGGAGAACCCTAGAGAGTTATT----CAGCTGCTGTAGGCCTTGGTGTCTCATCCG-AATAGGATTGTAATTACAGTAGGCAGAATAACAGCCCC-----------TACCTAA--CCTCTTCCTAGGAGACTGTAATTTCATTATGT----------GGAAAAATTCAG-----------ATTAGCTTTGAAAAAAA--------TCTCATTTGAGTCAGTtctctctctctctctct s rn2.chr12 39941175 1078 - 46874691 TGTAAGGACCTCCTGCCCTTCGGAATT----CTGTCCTCAGTAGGCCTGTGGAACTTGTGTGGATCCAGACCACCCTACCCCATGAAGCCAGCAGGGCTCTGCTCTG--TGCACTG---ATG-GTCTTTAGCG----CTGCATTCTGGGGG---------ATC------------------------------AATGTTTAAC----------------ATATGCCAAT----ATGCG-ATATA----GTACTGTATGGGGGTACTGTACCCATACGCACGAGAGAAGAGCAGAC----------TTCTTATTGG---CTCTGAGGCCTGAGACCCTAGCA------AGGAGCAGCTTGAACACTGCATTTTGGCTTTTACATGTGTAGCTT----GAACTCTGTTTGCCAATGGCTCCTGGCTTGCGTCACACA-cagagccacccgaaaggcttgctgaggcccaggttgccaagtttc-ttgcccggtttctaacgccatgcatctgcggt-ggcacgggcatctctg-atccggtaagtcctcagatgccgcgggtgctgctgggatggggcccacac---gagaaccTGTGCCTTACACCACTGGCTT---ATCCTCCGAGGGG---CACAGCTGCTGCCACGCCCTTTGTTTTGTGAGAGAGGAAACTGAACCCA----AGGAGATAGCTGTTAGCACAGAAGCTGGTTAGAGTCCCGCCAAGGAC------GGAG---------CCGATCAGCTCTTCTTCACACAGT-CTGACGTTGCTCCCCAAATACTTCCCATTGCTTTTGTTCTGTTGCTTTTACGTATTTACATATTTATGAATTTGCATATCTACATATTTGCATATTGATTTCATGCAGTGGAAGGACTGTAAGCTGTACCCAAGGACACTTACTGTTTA------CATAGGGAAAGAGCTTGT--TCCTGGGTTTGGAGACAAGATGGGC--AGGTGTGAATTCTGGCCTTCCTTAGTCCCCACCCTGTAAGCGGGGA----------------------GACCCTAGAGAGTTAGTTAGTCAGCTGCTGGAGGTCTTGGTGTCTCCTCCG-AATAGGATTGTAATTGCAGTACGCAGAATAACGGCCCC-----------TACCTAA--CCTCTTCCTAGAAGCCTGTCATCCCATTATAT----------GAAAAAATTCAG-----------GTTGGCTTTAAAAAAAAAAATCTCTTCTCATTTGACTCAGTCTTtttttttttttttt a score=73.000000 s hg15.chr13_random 379846 10 + 414659 -------gatctgggta s mm3.chr5 147110574 17 + 149719773 cactctcactctgtgtg a score=1167.000000 s hg15.chr13_random 379856 62 + 414659 ggacctgatgtaaccacaagggtctttttaatgtggaagaaggag-gcataagagtagatgtc s mm3.chr5 147110591 60 + 149719773 tgtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtgtgtgtgtgtgtgtatgtgagtgtgtATc s rn2.chr12 39942423 52 - 46874691 tgtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtgtgtgtgtgtgtgtgtgtgAG-------- a score=17661.000000 s hg15.chr13_random 379918 227 + 414659 aga------gtcattcaa--aataag---aaagatttgatg---------------ggccatccctgactttcaggttggaaggaggttctgagtcaaggaatacaggtgacctctagaagctggagaaggcaaggaaatg--gtttctcccctagaagttccagaaggattgcagccctgctaatatcttgactttatagccctttgagatttattttggatttc--tgacatcctgaaccatagtaaaagggtgt s mm3.chr5 147110813 248 + 149719773 ACAAATAAAATCTTTTAAACAagaaggagaaaggtttgacgttagaaaggctcattggccatcctgggctttgagatcagaacaggg-cagcagccaaggaatactggg-atccc--ggagtctggagaatcaagggaatacccctttacccacttgagcttcagagaggatgcggacctggccacacctgtatgg--tagctcagggagattcatttcagactct---ggcttctggaatggtaactcaatgcatt s rn2.chr12 39942637 232 - 46874691 acaaaggacatcttttaaacaagcag---agaggtttcatgtcagaaaggctcattggctatcctgggctttgagatcagaagcggg-catgagccaaggaatactggggatccc--aaagtctggggagtcaaggcaata-------gcccccttgagcttcagagaggatgcagacctgtccacacccggaagt--tagctcagggtgattcacttcggactctcctggcttctggaatggtgaC---------- a score=22570.000000 s hg15.chr13_random 380422 379 + 414659 ----ttgttttaagccactcagtttgtggccacttgttacag-cagcaagaggaaactcatacagttatcatgtgaactcacaggaa-tatggtgag---ttaaaaagagaggaagggt----gcaaaacATCCACGGTAGAGTG--AGAACTCTCCAGGGAGTGAGGACTGTGCACAGCATACAGTGATCACCCTCTTAGTAAGCTAAGTTTCTGAGCACCAGCTTTTTTGAGTTGACTTTGTTGTCTTTAACA-TTTGAAGATCACCCTTCTTTGCTCAGCCTGGCTTGCAGACCTGGGCTGATTTGT-GGATCTGATAGAAAAGTTTCCTTAGTTGGGCTCTTCT-CCCCGACCACCCCCATGCCAGTGTGGCCACATCCTCTGTCTGCATTGC s mm3.chr5 147111061 333 + 149719773 tgtcctgtcttaaaccactgagttggtggctacatgttaccg-tagctaaagcaaacCCAG--AGTCATCTAGTTCAGTGGCAGGAA-TGTGGGATCTCTCCTGTAAGGGATGTCAGACAGCAGCATGGTGTCTGGGATACAGTGGCAGTATCCGCTGGGGAGCAGGGAC-----------------GACCTTCTCC---------------------CATCTTCTTTTGTGAATGAACCTTGGTTTCTTTAACACTTTGGGGATCCATGTTTTCCACCCGCCCTGCC------------GCTG-TCTAC-CGAC-------ACACTTTCCCTTAGTTGGGCATCTTC-ATCCTGCCGCTCCCATTCAGACGCGACCACACCTCGTGTCTGCATTGC s rn2.chr12 39942869 329 - 46874691 ---------------CACTGAGCTAGTGGTTGCTTGTTAACAACAGCTAATGCAAACCCAG--AGTCATCTAGCTCAGTTTCAGGAAATGGAGGACC---CCTGtaagggatgtcaaacaccagcacagtgcctggtatacagtGGCAGCTTCCCCTGGGGGATGGGGTCTGT----------CAGAAACCTTCTCC---------------------CATCTGCTTTTGTGAGTGAACCTAGGTTACTTTAACGCTTTGGGGATCCATACTTTCGACCTGCCCTGCCCTGC-------TGCTT-TCTATGGGAC-------ACACATTCCCTTAGTTGGGCTTCTTTAATCCTGCCGCTCCCACTCAGA--CAGCCGCACCTTGTGTCAGCATTGC a score=137342.000000 s hg15.chr13_random 380801 1394 + 414659 TCACTCTTCAATTCCAAGAAGCGCAGGGGCACCGCCAGGAACAGGAACCCTGCCAGAGGAATACATCAAGAAACCAAGTCTCCCTTACGCATCACCGTAGGAACAGAGTTAATGGATTATGAACATGTGTTTGCTTTATACCATTGTTTGTTTCCCAGGTGGCAGCTGGCTGCCCCATCTTATTGGGTAGATGTAAGTGGAATTACGAATGGGATTTATGTTTCATGCACGATGGTGATTATTAACTTCAACTTTCAGGTAATTTTCAGACCACATTGCACTAACTTGGTCTCTGATTGTTTTT-CTCCTTGTTTGTTTATTCTGCAGCCAGAACTGTGTAGATGCGTACCCCACTTTCCTCGCTGTGCTCTGGTCTGCGGGGCTACTTTGCAGCCAAGGTAAC-TCAGACT----TCCCTTTGTTCATTCTCCTTCTATAAAGTGCATCTCAAGGAGGTTCAAAGGGCAGGCTTTTTGTTGAAAGGACTTTGCCTGACCTCTGGCTCCCATCTGTGAAGCCCTGGAGAGGTGAGAGCCCTCGGGAGGCCGTGTTTCAGGCATGCTCTGCACCCGTGCAGAG--CGCGTGTGATAATGCATTGCTAATGCTTGCTCCCTGGTGGCTGGCTGAGAGCTGCTGTGCTGACAAGGGTGGTTTAAGGCTAAATGTGACTCAGAATCCTTAAGCAGTGTTAGTTCAGATACAAGGGCATTATAAATGAGAGTGCCTGAGGGATCTATTTTGGGACCGCTGTCACTTGGCTCTTCTGCTAATAAGCTTCCAGTGTGGTGGCCCTCCTTCAGGCATG---------TTTCCACTGAGCCACGGGCTGGATGCCACATCCCCGGCCTTCCCACAGTTATC-AGCAGCCCACAGGCTTGACTTGAGCAAGTTGGAAAGACAAATCAACTTCCAGAGTTGATTTAACATTGAGTGGAAATCAG----TCATACTTTTGGTCCCCTTTCGGGGC----CACG-------CCTGGC----ACTG-----TGCCTGGTGGCAGATCGGCATGAACTGGCCAGCTTCTGTGGCCCTGGAGGGCACAGGCAGAAAGGCCACACTCAGTCCCATGATGAACTGTTTAAGACTTATTGTTGTCTCCCCGctctgtaaagtagatagagtggat-tttatgtcccttattacctttcaggatactttgactcagggagataaa--gtaacttgggtacagctactcagctggtgaagaacacaggcagaatgagtgcctgggtcttttgacttaaaattctggatttttcACAAAGATCCTCTTACTTTattcatttacataataaatatatattgaagagctactctgtgccaagccctgtgcctagatatacagtgataaataaagagtagcttctagaggtcacctggcggtgaggcacaggccagctggcaag s mm3.chr5 147111394 1127 + 149719773 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCAGGTAATTTTCAAGCTACATTGTAGTCACATGCTTTCTGATTTTTTTTTTTCCTGCCTTGTTTGCCCCACAGCCAGAACTGCGTAGATGCGTACCCCACTTTCCTTGTGGTACTCTGGACTGCAGGACTACTTTGCAGCCAAGGTAACCTGAGACTCCCCTCCCTTTGTGAGTTCTCTTTGTATAATGTGCAGCTCTCCGGGGTTCAGAGGGCAGGTATTTTGTTGAATAGCCTTGACCGGACCCACAGCTCTTATCCAGGATGCCCTGGAGAGATGAGAGCCCTGGGGAGGTTGAGTTCCGGGCATGCTCGGTGAGGGCGCAGCG--TG-GTGTGGTAATGCATTGCTAATGCTTGCTCCCTGGTGGCTGGTTGAGAGC-GCTGCTCTGACAAGGGTGGTTTAAGGCTAAATGTGACTCAGAATCCGTAAGCAGGGTTAGCTCAGATACAAGGGCATTGTAAATGAGAGCGCCCGAGGGATCTATTTTGGGACTGCTGCTGC-TGGCTTTTCTGTTAATAAGCT-CCAGCGTGGTGGCTCTTCTCCGGGCATG---------CATCTACCGAG-CGCCGGCTGGGTTCCA--------GCCGAACATGGGTAAGCATACTGCCCACAGCCTTGACTTCAACGAATCTGAAGAACAGGTTGATTCCGAGTGATCCTCTGCAATGAA-CGGAAACCGGAATAATATGCTTTGAGCTCTGTTTGGAGACTGAGCACC-GAAAGCCCTGGCTAAGACTGGCGTTTACCTGGTAGTGGCTCAGTGTGATTGAAACAGCTTCAGTGGCCCAGCAGGGTCCATACAGAGAGGCCAGAAGCGATCCCTTGACAAACATG----GGGTTATTATAAT-TTTCCACACGGC------TCTAGAGTGGATAATGAATTTCCCTGGGACCGGCAAGGACAATTTACCTTAGGGGAAAAAA--TTAG-TTGTTCAGGGTTATTCAGTTGATGAGTGCCCTGGGCAGATCCAGAGTCTGGGTCTTTCAGTTCTAAATCCTGTAGTTTTTCTAAGCATTCTTTTACTGTACTAACTTAGATTGTAAATACGCTTTG--CATTTACTGTATGCCAA-CTCTGT-CCTGATTGTATGAGGATTAATA-------------ATATACCAACGGACCATTACA---AAGTAGGT-GGGTGg s rn2.chr12 39943450 1090 - 46874691 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCAGGTAGTTTTCAAGCCACATTGTAGTCACGTGTTTTCTGATTTTTTTT---CCTGCCCTGTTTGCCCCACAGCCAGAACTGCGTAGATGCGTACCCCACTTTCCTTGTGGTACTCTGGACTGCAGGACTACTTTGCAGCCAAGGTAAC-GGAGACT----TCCCTTTGTGAGTTCTCTTGGTATAATGTGCAGCTCTCCGGGGTTCAAAGGGCAGGCATTTTGTTGAATAGCCTTGCC--GATCTACAGCTCTTATCCAGGATGCCTTGGAGAGATGAGAGCCCTGGGGAGGTTGGGTTCCGGGCATGCTCAGTGAGGGCGCAGCCCCTG-GTGTGGTAATGCATTGCTAATGCTTGCTCCCTGGTGGCTGGTTGAGAGC-GCTGCTCTGACAAGGGTGGTTTAAGGCTAAATGTGACTCAGAATCCGCAAGCAGTGTTAGCTCAGATACAAGGGCATTGTGAATGAGAGAGCCTGAGGGATCTATTTCGGGACTGCCGCTGC-TGGCTTTTCTGTTAATAAGCTCCCAGCATGGTGGCCCTTCTCCTGGCATGCGTTGTCATCATCTACGGAG-CGCGGGCTGGGTTCCA--------ACCGAACCTGGGTAATC---------------------------AATCTGAAGAACAGAGTGATTCCCAGAGATCCTCTGCAATTAACCAGAAACCAGAATCATATGTTTTTGGCTGACTTTGGAGACTGAGCACCAGAAAGCCCTGGCTAAGACTGGTGTTTGCCTGGTAGTGGCTTGGTGTGATTGGAGCAGCTTT-GTGA-CCAGCAGTATCCGTACAGAGAGTCCAGAAGCAATCTCGTGATAAACACT----GGATTATTATAAT-TTTCTACACTGTAATATATGTCTAGTGGGTAATGAATTTCTCTGGGACCCTTAAGAACAATTTATCTTAGGGAAAAAAAAGGTAG-TTTTTCAGGGTTATTCGGTTGATGAGTGCCCTGGGCGAGACCAGAGCCTGGGTC-----------------------TTTCTAAGCATTCTTTTACTGTAGTAATTTATATTGTAAATACACTTTGAACATTTACTGTATGCCAA-CTCTGT-CCTGAATGTATGAGGATTAATA-------------ATATACAAACAGGCTATTAAA---AAGCCCTCAGGATGA a score=2465.000000 s hg15.chr13_random 382200 193 + 414659 cCACAGAAGTCAGTGAATGAAGACAATGACAAGGGTGGGAAGCGCCATATGGGAAGAGAACCAAGTTCAGTGATAGAGAGCAGA----------------------GGTGAGGC-----------GGCAGCAGAAACCACTTAAGGGACACCACGTGGCACTCCTTCTGTGCTGAGAAGGCTGTCAGTAAGCTCACCATTTATTTCCTATTTTCTCTCCTGAGTTA s mm3.chr5 147112861 212 + 149719773 CCACA----CCCTCAAAAAAACCCTGTCTCA------GAAAAATTTATTCCCTAAAAGAACCCC-TTTAAAGATTAAAAGAAGATAATTAGGTAGATGCTTCCACGAGTGAGACTCAGTCCTATGGGCAGCAGAGACCACTGAAGAGACACCGCACAGC-CTCCCTTGGCACCT-GAAGGCTCTCAGT-AGCTCATCATCCATTTTCCGTGTTCTACCCTGAGTGA a score=34151.000000 s hg15.chr13_random 382393 363 + 414659 AATAGGAAACATGTCTCGCATTACTTGAAAAATCAAGTCAAACTATGCTCTTACTAGGAGTTATGGTTCTTTTTATGTCTTAGATGATGCTTGATCTAGATGAA-----TGCGGACTTGCTGTAGCTAGATAAATACAATGGGAGTTTGAAGGTGTTTCGTAGCCCTGGAAATAGGTATTTCCTGTCAAAACAAGCTTTGTCATTGCCAGCAGACAAAAGCATCAGTAA-CCTTGGTTGATAATCGTCATTTCTTA--GGAATAAAGTAGACTGTAGAATTTTTTTTagcagaaaggaaacccaaagataattctagtgcaaatccctcactttatagagcagaagctcaagtcccagaggaacaagtggc s mm3.chr5 147113073 350 + 149719773 GATTATAAAAATGGATGG----GCTTGAAAAATCAAGTCAAAGAACCCGCATTCGAGGAGTTATGAGTCTTGTTGGGTCTGAA-------TAAAACGAGATAAATCTGCTGCCGCCT--CTCCAGCTACGTGAATACAAAGGACGTCTGAGTGTGTTTCAGAGCCCTGGAAATTTACAT---CTGTCAAAGCAAACATCCGTGTTGCCAGGGCTCAAACACGTCAGTCAACTATAGTTGATCGCTGCCATTTTTTAAATGAATACAGTAGATTATACAAATTGTTTGGGT-GAAGGGAGCCCCAGAGACTATTCTACTTCAAAACTCTCACTCTGAAGACC---ATCCCAAGATCT-GATGGACAAAGGGC s rn2.chr12 39945053 343 - 46874691 gagtataaaaccaaatct----gtttgaaaaaTGAAGTCAAAGAACATGACTGTGAGGAGTCATAAGTCTTGTTAGGTCTGAA-------TGAAACGAGAGAAATCTGCTGCTGCCT--CTCCAGCTATGTGAATACAGAGGGCCTCTGAGAACGTTTTGGAGCCTGGGAAAT--ACAA---CCGTTGAAACAAACGTCCATGTTGCTGGGGCTCAAACGTCCCAGTCA-CTATAGTTCATCACCGCCATGTTTTA--TGAATACAGTAGATGATACCAACTGTTGGGAT-AAAGGGAGCCCCAGAGACGATTCTGCTCCAAAGTTCTCACTCTGAAGACT---ATCCCAAGATCCCGGTGGACAAAG--- a score=25164.000000 s hg15.chr13_random 382773 251 + 414659 TTTTAGGGGCTGGATTTGTACCCTCCTGGTG---CCAGCAGCCCACTTCCC----------TG-----CAGGAGGCACTCACC-TTCCTTGCACAGGGGTATGAGTGTGGCCATTTTCCACCCATAATCTCTGTTAGCTCATGTTCAATTGGGTTCCCATTGAAAGAAAAATGGACCAGTAAG--TTGGAGCAGAATCATTCAGATGGTATAACATAAGGAAAAACTTTGCCCAAGGCAAATCG----------------TGATTGTGACAGCTTTGTGATTTTTAGA s mm3.chr5 147113764 259 + 149719773 TTTTAGAGACTGGGTTTGCTCCTGCTTTGTGAGTCACACCGCCCTAATC------------TGAGGCTTAGGAGGACTCTGCTATTCCCTGCAGAAGGCAGGGGATACGAACCCTTTCCATACCTGTTGCCTGTTAGCTTAT-----GTTAAATTCCCACTTAAAGAGAAATGGGCCAACAAGACTCAGAACAGAACTGTCCAGAT------------GGGAAAACATTATGCAAAGCAAATCACTAATTGTGACATAATTAATTGTGACAATCTTGTGCTTTTAGGA s rn2.chr12 39945622 271 - 46874691 CTTTAAAGCCTTCTTTTGCACGTGCTATGTAAACCCAGCAGCTCGAATCCCCCTTAGATTCTGAGGCCTAGAAGACCTCTGCTATTCCCTGCAGAAGGCAGGGGAGATGAGCCCTTTCCATATCTGTTGCCTATTAGCTTATGTCCAGTTGAATTCCAACTTAATGGGAAATGGGTCAACAAGACT-----CAGAACTGTTCAGCT------------GGGAAAACTTTATGCAAAACAAATCACTAATTGTGGCACAATTAATTGTGACAATCTTGTGCCTTTAGGA a score=644.000000 s hg15.chr13_random 384172 33 + 414659 AATGCAGAGGGAATCTCCTTCCCAAAAAGCTAG s mm3.chr5 141071698 33 + 149719773 AGCGCAGAGGAAGTCTCCTTAACTGATGCAGGA a score=2797.000000 s hg15.chr13_random 384205 78 + 414659 AATGCAGAGGGAATCTCCTTCCCAAAAGGCTAGAACGCAGAGGGAATCTCCTTCCCAAAAGGCTAGAACGCAGAGGGA s mm3.chr5 141071698 78 + 149719773 AGCGCAGAGGAAGTCTCCTTAACTGATGCAGGAAGCGCAGAGGAAGTCTCCTTACCTGATGCAGGAAGCGCAGAGGAA a score=22272.000000 s hg15.chr13_random 384283 314 + 414659 ATCTCCTTCCCAAAAGGCTAGAATGCAGAGGGAATGTCCTTCTCTTCTAAATGGTAGCTGTTAGTTCAAGAAAGGTTAAACATTGTGCTGTG------GGGAGGCTCaggggtgaagggtgtacttttaagagaaccagtttcagagctgggtttggggtttaag-----------ccctaccctctgcccccttttacgagctgacagccttatgcaagcctggttgaccacctgaacccacgtttccacatctggaaatagaaatGTGGGTACTAGTTATGTTGAAAGGACTCAGGTTAGATGATAGATATGCAAATACCTTGGAAACc s mm3.chr5 147116521 268 + 149719773 ATTTATTTACCCAGAGATTGGAATGCAAAGAGAAC-TCCTTCCCT-------------------------AGAGGCCGGAAAGTGTGCTTTGTGTACCAGAAACCCCAGGGACACAGAGTATCATCTCAAGAAAACCAGACTCAAAATTGGGGCTTTGGTTGAAGGCGTGAACATTCCCTGCGTTCCTTCCC--------AGCTGAT-GCCCCATGCAACTCCCCCAGGCTGCCAGAGTTCAACTTCCCATATCCAGAGATAAA---------------CACGTTGAAGGATGCCC-------------TACTGCTGGTACCTAAGCCAGC s rn2.chr12 39949065 263 - 46874691 ATTTA----CCCAGAGATTGGAATGCAAAGAAACC-TTCTTCCTT-------------------------ACAAGCTGGAAAGTGTGCTCTGTGTACCAGAAACTCCAGGGGCACAGAGTATCATCTTGAGAAAACCAGACTCAAAACTGGGGCTGTGGTTCAGGGTGGGAACTCTCCCTGCACTCCCTCCC--------AGCTGAC-GCCC-ACGCAAGCCCCTCTGGCTGCCCGAGTCCAACTTCCCGTGTCTACAGATAGA---------------CACGTTAAAGGGTTCCC-------------ATCAGATGACACCTAAGCAAAT a score=52522.000000 s hg15.chr13_random 384917 412 + 414659 GTCT-----------------------------TCTGCTAGATTTTGTGACCA-ATGTTGATTGCCTAA------------TTGGGCTAACAGCATGTTTTGGTGGCTACGAAACTGACACAGGTGTTTTCATTTCTCCAC-TTAGTTCCTGCTGCGTTTGCTGGACTGATGTACTTGTTTGTGAGGCAAAAGTACTTTGTCGGTTACCTAGGAGAGAGAACGCAGAGGTAGGTAACTGGGACTACTAAAGAACT--------------GTGGAGCGATTCCTGATTTTTGAGCAGGAAGAG---TGACAATTCAAAACAGTATTTGACTA-GATTCACGGCTCCGTAGCATCCCCTTGGGTGGGAGGGGGAAGGCTGACTAGGACCTCTGATTCTTCTCTCCCTGAGCTTTGAAGGCTCTGAAAATACAGCTGGGGGGACTTGCCCAGTTTTCTTATTAAGCAATTCCTCCG s mm3.chr5 147117294 434 + 149719773 GTTTGCTAGCCTCCACTTACAGAACCCAAGGTCTCTGCTGGATTTTGTGGTGAGACACTAATGGCTTAACCACTGGTACTGTTGTGTGAACAAC-TGCTTGGGAGACCGCGAGACTGACGTGTGTGTTTTCGTTTCTCCACTTTAGTCCCTGCCGCCTTCGCCGGACTGATGTACCTGTTTGTGAGGCAAAAATACTTTGTCGGCTATCTGGGAGAGAGAACTCAGAGGTAGGTCCCAGGG--TGCTATAGAACC---------------TGATGTGACCTCTGCTTTCCCAGTAGGAGGGTGTGGAGCAACCC---------TCTGACTGCCACTGAAGGTTCGTCGGGACCTCCTTGGATGAAA---GGAGGACAGACTAAGATTCCCA-------CGTCCCAGAAATTTAAGGAGTCTGAGAATACAGCTGGAGAG--TTGCCTGGTTTTCCTGTTAAATTTTTCCTTCG s rn2.chr12 39949812 433 - 46874691 GCGTGCTAGCCTCCACTTTCAGAGCCCAAGGTCTCTGCTGGATTTTGCGGTCAAACGCTAATTGCTTAACCACTGTTACTGTTGTGTGAACAAC-TGTCTGGGAGACCGTGAACCTGACGTGTGCGTTTTCATTTCTCCACTTTAGTCCCCGCCGCCTTCGCTGGGCTGATGTATCTGTTCGTGAGGCAAAAGTACTTTGTCGGCTATCTGGGAGAGAGAACTCAGAGGTAGGTCTCAGGG--TGCTATAGAACTTGACATGACGTGACGTGACGTGACGTTTGCCTTCCCAGTAGGAGGGT---------------------CCTGACTGCCACTGAGGGCTCAATGGGCTCTCCTTGGAT-------GGAGGACAGGGTAGAGGCCCCA-------CCTCCCTGAAGTTTAAGGATTCTGAACAGACAGCGGGAGAG--CTGCCTCGTTTTCCCATGAAAGTTTTCCTTTg a score=25825.000000 s hg15.chr13_random 385329 256 + 414659 CATGGTGCTGGCTTTCAAAGGGTGCTTCAGTGCTGTTTGCTGCACGTGCCTTGCAGCCCCACACCCTGCACTCCCGCCCTGCAGAGTCTGGCGCTGGAATGACATTTTAGGT----CTGGGTTCCCAGGCCTCCTGAGAGTGAAATGTTTCATTGTTTGTCTAGAGAAATGAGAACTAAAGCTTGCACCTTGTGATAAGTTGTCCTGAGGAACATATCTTTCAGGGCCCAGAAGAAAGAATGTTGGGAAAATAAGATGCA s mm3.chr5 147117728 234 + 149719773 CACAGC-CTTGATTCCTAGGGGTGTTTTAGCACACCGGGCTGTACACTGCTTGCACCTGCACGCCCAGCTGTTCTCCGTGGTGGAGTCTGGGGCGGCAATAACTTTTTAGGTAGGTCTGACTTCCCAGGCCGCTTGTGAATTAAGCATCTCA----TCGTCAAGAGAAATGAGAGCTAATGTTTGCATCTTACCATGGGTTCTTTTGGA--------CCTCCAG-------------GAGTGCTGAGGATACGAGATGTA s rn2.chr12 39950366 222 - 46874691 CGCAGC-CTTGATTCCTGGCGCGGTTATAGCACGCTGGGCTGTACGCTGCTTGCAACCGCACACC-AGCTGTTCTCCGTGGTGGAGTCTGGGGCAACGATAACCTTTTTGGT----CTGACTTCCCAGGCCTCTTGTGAATTAAGCATCTCA----CTGTCGAGAGAC-------CTAACGTTTGCCTCTTACCATGGGTTCTCTTGAA--------CCTTAAG-------------GAGTGCTGAGAATACAAGATGTA a score=7454.000000 s hg15.chr13_random 386179 35 + 414659 GCTGACCCCAGCCTTCCACACCATTTTCCTTCCTT s mm3.chr5 147118013 35 + 149719773 GCTGCACCCAGCCTTCCTCAGCACTTGCCTTCCTT s rn2.chr12 39950640 35 - 46874691 GCTGCACCCAGCCTTCCTCAGCACTTGCTTTCCTT a score=8619.000000 s hg15.chr13_random 402707 78 + 414659 agccaggcacaactatc--tcatgctcatttaaagagaaggaaagtgagtcttttgagagagcaagtaattcactacaga s mm3.chr5 147129425 77 + 149719773 AGCCAGGCACTGTTATGACCCAGGTTCAGTAACAGAGGAGCAAAGTG-GCCCTTAGAGAAGGAAGGTAC--TGACCCGGG s rn2.chr12 39963472 78 - 46874691 AGCCAGACACTGTTATGA-CCAGGCTCATTCACAGAGGagcaaagtg-acccttagaggaggaagatactttgccccggg a score=376.000000 s hg15.chr13_random 402785 40 + 414659 tcatatagataggaactgatagGTAAGGGATCAGGGTATG s mm3.chr5 147129502 40 + 149719773 TCACAGTGCAGGGAACCGCCAGCTACTGTACAGGACTCTG a score=17698.000000 s hg15.chr13_random 402825 270 + 414659 GACCTCAAGGGTGGGGAGGCTTGAAAACCCTGAAATTAACCTCACAATGGTATGTATGTGGACATCCATTCTGTGCATGTTGTTTTGGCTGGGTGGTTGTGGTAA---------GATTCCTATGACTTTCACCAGATTCTTGAGCGCTTTCAACACCACTGTCTAAACA---GGCTCCGTCAGAAT-CCAGATGCCTTGCCTGACAGCTGCCTGTCATAAGTC-ATCCTTATAA-TGGGGCCCAAGAAAGGATGTTT----------------------------CATTTCCTCTTCTGCA--------GACAGACATATT s mm3.chr5 147129542 226 + 149719773 ---------------------------------------------------GTGTATGTGAATCTCTAACCCATTCAAGCTGCTTCAGTTGG--GGCAGTGGCAGCTCATGATTGGCTTCTTCACCCTTCATCAGATTCTTAAGGACTGGGAGA------GTCTAAGCC---GATATCCTCAGAATGCTGGATGCTTTGTGTGACAGCTGCCTATCATAAGTCAACCCTTCTAACTGGGGCCCAAAGCAAGA---------------------------------CACATCAGCTTTGGCCTAATTTATGGAAGATGTGTC s rn2.chr12 39963677 261 - 46874691 ---------------------------------------------------gtgtgtgtgtgtgtgtAACCGGTCCATGCTGCTTCAGCCGG--CGTGGCGTTGGCTCATGATTGACTTCTTCAGCTTCCACCAGACTCTTAAGGACTGGGAGA------GTCTAAGCCTGTGGCATCCTCAGAATGCCAGACACTTTGTGTGACAGTTCCCTGTCATAATTC-ACCCTCCTAACTGGGGCCCAGAGCAGGATGACTTCTTCTGCTGCAAACAGACACATTGGCCCAGATCCGCTTTGGCCTAATTTATGGAAGATGGGTC a score=2278.000000 s hg15.chr13_random 403115 29 + 414659 AAAA---------------------------------CACAGCAATATTGTCCTAATTTATG s mm3.chr5 147129728 29 + 149719773 AAGA---------------------------------CACATCAGCTTTGGCCTAATTTATG s rn2.chr12 39963865 62 - 46874691 AGGATGACTTCTTCTGCTGCAAACAGACACATTGGCCCAGATCCGCTTTGGCCTAATTTATG a score=10103.000000 s hg15.chr13_random 403144 346 + 414659 GAAAACATGTCAGGTTAGAAAAATC---------ATAATAAATCAA-----------------------TTGATCCTTTGTATTTGTCATTTATTTTTCTGAATTTTTCAATTTAGAACAGGGCCCAAAGAGAAAAGGATGGCTCCACCCTGTGAAAAATAAAAGTAAAGGTCTTTTTCTTATTAGTTTGTTTAAGAAAAACAACTTTAAGGCATTTTCCTGATAACTCTCTTATAAGCCTTCAAGACTTGCAGGTAATTTCTAACTCTAGGGTCCTTTGCTATTTGAAAAAATAACCTACTCCCATATGGTCAGCACCAAAGGAAAAATGATCATGTTTCTTTTGTCTCTGGCATGGTTTTGACAGAAAAGATAATT s mm3.chr5 147130500 351 + 149719773 CTACTAATAACAGGttaaaaaaatctttaaaaatataaaaaataaaaataacatttgtaaaaaaaaGAATTGATCATTTATATTTTTCATTCTTTTTTCCCA--TTTCCAGTTCATAACTGAGCTCCAAGAGAGCAGGATGGCTCCCTGCTCTGATAGAGAAAAACAT-GTTCTCTTTCTCTTTC-----------AAACGAGGCTTTAAGGAATTTCCCAGATAACTTTCTTACAAGCCTCCGGGACTTGGCAGTAATTTCCAACTCTATGGTTCTTTCCTAACTGAAAAGGCAATGCAGCTCCATCCGACCTGTGCCAGAACAGAAG-GATCG------------CTTTGGCATGGTGTTGGCAGGAAGGGCAACT a score=7133.000000 s hg15.chr13_random 403678 251 + 414659 AAAATATATAGTTTTTCTTATCCCTTTTCTACTCAAGTGATACACATTTATCTTAAAAATTGCCTGAAATTTCTATAGGAAAGG---GTATCTAAATTT-------TGCAATATGTTGAAACATATTTCACCTGCCCATGCCCAGAAATCCACCACTTTGG-----TGTCTGGCCCATACTTTAACAATTAGGCTAAAACAAACAAATGCCTGCATGCACTTTGAGACCTGTCTGCCCCTTATATTAAGAGTTCCTGTGAGTACTG s mm3.chr5 147181188 245 + 149719773 AAAGCGTATGGTTTCTCTTATCTTCAGTCTATTTG---------CATATATCTTAAGCGTTGCCAGAGATTTCTATAGAAAAGGTATATATGTATGCTTCCTCTACTGCAACAAGTTGCAACATATTGCGCCCACACATACCCAGGAATTCAC----TTGAAGTTCTGCCCGGCACATACTTTGGAAATTAGGTTAGAACAAGC----GGCTGGTTGTGCTTTA----TTCACGGCCTTTTCGGGACAGAGTGCCTTTGAGCACTG a score=39781.000000 s hg15.chr13_random 403929 454 + 414659 AGGCTTTGCTCAATATAACGTGAGGATTTGGTTACATCATGCAGAAATTGATGAAATTCCCACTATAATGCTT--------GGGTATGGAGAGTCGAGAAGTTTTTTTGGGTAACTATATCAGAACTCAGG-GAGAAATTGGTGTGGAAATTGATTTTTCCAAAGCCTCAACATTTCAAACGCAA-AACCTCTTTCATCTGGTTTCTTCTG-GGGAAATAACAGTTGGGAGCTAATGAACGGGAAGAGATATCAGGAAACATAAGCTCCACGTTGGCCCTCATT---------TCACTTCCAGCACCAGTCCTGGTGAATGCT-----TAATCATGAAGCGGAGCATCTCGGAAAAGCCTCCTCTTAGGGTTAGGGGTTGCCAGTGTGCTATGGGGTCC---CTTC---------CTGGAGGTTGTCATGGTCATATACTAATTTATTCCCATCTTCTTGCCTCATCCCTGA-ATCCTTAGAACCCATGTGT s mm3.chr5 147181433 425 + 149719773 AGGCTGTGCTC------ATGTGACGGTGTGGTT--GTTACATGGAGGCTTGGGAACTGCCCACCCCGAAGTTC--------GGGTGTCCAGAGCTGAGACGCTTCTCTGGTT------------TCGCAGG-GAGAAATTCCTGCGGAAGCTGTTTTCCCAAAAGCCTCGACATTTCAAATGCAT--TCCTATTTTATCTGGTTACTTCTCTGGGAAGCCACACTCCGG-GCTAACGAATGGGAAGAGATGGAGAGATAT-----CACCAGGTTGGTTTTCGTT---------TCTGTTC-----------CTTGCAGAAGGAACAGAGCGTCTCACAACTGAGCGTCTAAGCAAAGTCTTCTCTGTGGCAAGCAAGTTCCCAGCATGCCCTGCGGGCCAGTCTTCAGCGCCTGCCTGG-------CACAGCCCCA---TGATTCTTTTGCATACTTTTGTGCCTTCTTCAACATCCTTGGAACACCCGTGT s rn2.chr12 39972029 426 - 46874691 AGGCTGTGCTC------ATGTGATGGTGTGGAT--GGTATGTGGAGACTTAGGAACTGCCCACCCCAAAGCTCCGGCAGGCAGGCGTACAGAGCTGAGAAGCCTTTCTGGTT------------ACACAGCCGAGAAATTCCTGTGGAAGCTGTTTTCCCCAAAGCCTCGACATTTCAAATGCAAAACCCTATTTTATCTGGTTACTTCTC-AGGAACCCACTCTCCCT-GCTAATGAATGGGGAGAGATGGCGAGGTCT-----CTCCACGTTGTTCTCCGTTCACTCAGGCTCTGTTC-----------CTTGTAGAAGTT-----TCGTCTCAAAACTCAGCATCGAA----AGCCTTCTCTAAGGCCGGCAAGTTCCCAGCATGCCCTGCGGGCCAGCCTTC---------CTGG-------CACAGTCCCA---TGATCCATCTGCATACTTTTGTGGAGTCTCCAACGTCCTTGGAACACCCATGT a score=22287.000000 s hg15.chr13_random 407830 265 + 414659 -------------------TTCATTAAATACAGCCAGTTAGCGATTCATAAACTCATTCATTCATTTATTCATTGGTTTGCCAATATTTGGGGGCACGTATGACGGTCCTCGCATTATCTTAGGTTCCCACAGGGAATTACAGAACATTTTAAACTGTATAACATGGAAGTGCTGGGCACGATGCTAGTATATGAAGATACCAACCTAATTCACATGGCTGTGTGAAGAGGGATGGATGTC-----ATAAAAGA-TCTTCAAGTAATT--TTTCCAGAAGCCAGATGTGTAt s mm3.chr5 2599423 218 - 149719773 -------------------TTCATTGACTATAGCCAGCAAGTGACCTGTGAATCCATTTTGTCATGTTTGT-TTGGT----------------------------GGCCTGGCATTATCTTCAACTC----------TTAGAGCACATTGTAAGCTGCATGATGCAGTAATATTGGGCATGATCCTAGTGAATTAAGATCCCAACCTAATCCAAA----TATGGGA-CGGGGAAGGTACTCAGTCAATAAAAGACTCTTGAAGACGTTAGCGTCCATA-----------TAT s rn2.chr12 6921727 239 + 46874691 TCCAGACTACAGAATATATTTCATTAACTATAGCCAGCAAGTGACTTGTGAATCCATGCACTCATTTGTTTATTGGT----------------------------GGCCTGGCATTGTCTTCAACTC----------TTAGAGCACATTGTAA-CTGCATGAGGCAACAATGTTGGGTATGATGCTGGTGAATTAAGATGCCAACCGAATCCAAA----CATGAGATCAGGGAGGGAACTCAGTCAACAAAAGACTCTTGAAGACGTTAGTGTCCATAA----------TAT a score=92578.000000 s hg15.chr13_random 408388 942 + 414659 AGGATGTGTATTTTTAA-TATTATCATTTAGTTTGAGGAAAACAAACTAGTCGTTTGTGGGTATAGAGATAAATCCCCCAAAAGCCATTAACAAAACCCCTCAACTATCAGCTTAAAACATGTCTCTGCATTTTATTTTAAGAAAACACAAACCTGGTCACAAAACATCTTCAGAGAACAGGATAAGTGAAGAAACAAACAAAATGCATGGGAATAGCAAATTTGGGGCCACGGTCATGTTCAAGGGGCGGAGCTGACATGACATCATTTTGTTCCCGGAAAAGCAAGGTTAACTCAAGCTGTGAAGCCCAGATGGCCAATAGATTTACAGC-----CATC-TAAAGAAGAGCAGAATGCTCTCAAGAGCTGAATTATGATGACTTGTAGGTATTGATTAGATGAGAACACCAACCCCATATTCAGCAGAGAGTTAGGGAATGAGAAGTAGAGGGGAGATGGTGGTGGAGATCGTCTTTATGTAGTTTTCAAAGTCACTTCCGAAAAAGAAGATGAGGTAATAGTTGAATATGCCAGCAACGGACATGAGGAACAGGAAGAGTATGATGCGTTTCCCAAATATGTAGCCAGGGGTGCTGGAAGAGAAGGAAAAAGAAAACTGTAGATGCAGTGCGAATGACACCAATT-TCACACACACA--AAAATGTTACCCCTTTTAGATATATGGGGTTTAAATTATAGCTCCCTGGACTCAACAATGCTCCATTTTCCCATTTACTTCATTTGAAGGGTAGAAGTGTCTCAGCTATTACTAGTCATTGAACTTATTTCAAACCCAAGTGAAGAGAGCCTAGACCTCAAAACCCATTACCACGAGGGCTCTGCTGTACCCGCCCCTCTGTGCTCTCATGATTTCCTTAACTCCAGAGCTCCTTGATGGCCTGAAGATGGCAGGTTCTGTTGACCATTGGGCATCCTCACTGAGCATTA s mm3.chr5 2599641 743 - 149719773 GGAAATTGTGATTTTAATTATCATCATGTAGGTTGAAGAA---ACACTAATAGCT------AATACAGAAATATCACCCCAAT----------------CTGAGCCATGGGCTTAAATTTTGTCTATACCCTTTATTTTAGGAAAACACGTGTCTGATTACAAGACATCTTCAGAAAGCAGGATAAGCCAGGAGAAGTATAGGCTGGATGTAGACAATAAATCCTGGGCCACCGCCGCATTCGAGGGGTGGAGCTAGCACAAGACATTTTTCTTCCCGGAAAAGCAAAGTTAACGGATGCCACAGAGCCCCGAGGGCAGCAAGATTGACAGCATCTACAGCTTGAAGAGGAGCAGAAGCCTTCGCGGCGTTGCGTTATGATG---CGTCTCTATTGATCTGGTGAGCGTCCTTCTCT-GTCTCCAGC----AATCAGGGGATGAGAAGCAGCGGGGAGATCGTCGTGCTTACCGTTCTGATGTAGTTCTCAAAGTCGCTTCCGAAGAAGAAGATGAGGTAATGGTTGAGTATCCCGGCGAAGGACATGAGGAACAGGAACAGGATGATCCGCTTGCCGAAGATGTAGCCAGGGGTGCTGCGAGAGAAGG---GAGGGGGCCGTAGATGCATCACAAACGACACCCAGT-TCACCCA------GTGACGCCGCCACTTCCAGACACGGGGC-GTTAAATTATT-CCGCGTTTACTC------GCTCTATTTACCCACTTACTTCATAGCAAGGATGGGCACGA-------------------------------------------------------------------------------CCCTCCTGTA----------------------------------------------------------------------ATTAAGCACTGCGCAT---------GCTTCA s rn2.chr12 6921966 747 + 46874691 GGATATTGTGATTTTAATTATCATCATGTAAGTTGAAGAA---ACACTAGTAGCT------AATACAGAAAAACCACCCCAAA----------------CAGAGCCATAGGCCAAAATTTTGTCTATGCCCTTCATTTTAGGAAAACACATATCTGATCACAAGACACCTTCAGAGAGCAGGATAAGCCCGGAGAAGTACAAGATGGATCTAGACAGTAAATCCTGGACCACTGCCCCATCCGAGGGGTGGAGCTAGCGCAAGATTATTTTCTTCCCGGAAAAGCAAAGTTAACGGATGCGGCGGAGCCCCGAGGGCCGCTAGATTTACAGCATCTACAGC-TGAGGAGGAGCAGAAGCCTTCGCGGGGGTAGGTTAGGATG---CGTCTCTATTGATCTGGCGATCGTCCTACTCCGGTATCCAGC----CATCAGGGGATGAGAAGCAGCGGGGAGATCGTCGTGGTTATAGTTCTAATGTAGTTCTCGAAGTCGCTTCCGAAGAAGAAGATGAGGTAATGGTTGAGGATGCCGGCAAGGGACATGAGGAACAAGAATAGGATGATCCGCTTGCCGAATATGTAGCCAGGGGTGCTGCGAGGGAAGG---GAGGAGGCGGTAGGTGCAGCACAAACCACGCCCCGTGTCACCCAAAAGACACGGGGTGGCCGCTTCCAGACACAGGGCAGTTAAATTATA-CCGCATTTACTC------GTGA----CACCCACTTACCTCACAGCCAGGGTGGGCGAGC-------------------------------------------------------------------------------CTCTGCTGTA----------------------------------------------------------------------ATTAAGCACTGCACAT---------GTTTCA a score=19288.000000 s hg15.chr13_random 409333 255 + 414659 CCATTAAGACCCTCTCTGCA-GCTGCCCATAACGACAGACACGTGTGTAATGCAGGACTGTGTTAGAA-GTGAAGTTTAAATGAGCTGATAAAACCGGTGGAATCTGAAAGGTGCTTCGGCATCTGAGGGCTCATTCTA-TTCTCCTGAGGCTGACT-GGAATAATTCATATCTACATTCATGAGACCTGGGCACCCAGCAATGGGAGACAGGCCCTTGCATTTTTGAGTGGAGGGAGAGACTTGGTTTTTGTTGTTAt s mm3.chr5 2600484 209 - 149719773 CCTTTAAGGCTCTCACTGGAGGCTG-----------------GGGTGTAATG-AACATTGTGCTCAGG-AGATGGTTTAAATACAC---------CGGTG--------AAGGTGCTTCCGCCCTCGAGGGTTCAACCTTTCCCTCCTGAGGTTGCCTGGGAAGAAGTCAGGTTGGCCCTAATGAGAGACAAGTACCCAGCGATGGAA-----------ACACATCCCAGAGGAGTGAAAGA---AGTTTTAATCTCCCT s rn2.chr12 6922917 205 + 46874691 CCTATAAGGCTCGCACTAGAGGCTG-----------------GGGTGTAGTG-AGCATTGTGCTAGGGGAGATGGTTTAAATATGC----------AGTG--------AAGGTACTTCAGCCCCTGAGGGTTCAACCTT-CCCTCCCGAGGCTGCCTGGGAAGAAGTGAGGTTTGCCCTAATGAGAGACAAGCACCCAGTGGTAGAA-----------ACACATCCCAGAGGAGTGAAAGA---AACTTTAATCTC--- a score=12461.000000 s hg15.chr13_random 409903 401 + 414659 TTTTAATACACTCT----------------------------ATCCTTCTCTCCAAGGCAC--------------------------TAAATCCTAAA--------------CTGCATCC--------------------CCCAGTGAGATGTGACCTCCTAATGGCATGCAGAGGCCACCCTGTTTCTGCCCTCCCTCTGCAGAGCCCTCCTCTGACTGCCTCCATGGCTGGCCCATCTGAGAGGTGATAACAGGTTGGGAAAGTCCAAATGACTCAG----------GAGGATTGTTAGTAAAGATCCTGGGAAGGCATCTTTAGGCAATCAGGACCGCACAACAAGAT--GAGCCAGCTCAGCCCAACAGCTAACTTCGTACTGCCAAGTGCCGTTTCCTGCCATAATCA-------GAGAG---------CAGCAT-TTGGCATCCACAGGTTTAATATTAGAAATTTTATCAATTTGAAAGGCACCCCATATGCTGATAATATAACTCATAAt s mm3.chr5 2600693 494 - 149719773 TTCTCAtcccctcccctccccttccgtcccctctcctcctctccccttcccttccctcctctcccctcctttctctcccctcccctTTCCATCCTAAATATTTTACACAGAGCATCATCATTTGGAGATAGGAGGAGATTCCTCATGAGAAGTGACTGTCTAATGGCGTGCCAAGGCTACCC-ATGTCCTCTGTCCCTCTGCAAGACCCTTGGCTG-CTGGGCCTG-----GGCCCATCTGAGTGGCGCTGACATGTCTGGAATAGCCAG-TGAAACGGTTTGTCAAGATAAGATT-TCAGTAATGAACCAGCAATGGCA---TGGGGCAATCAGCCCTG-ATTTGGAGCTTAGAGCAAAACCAGCGGGACAGGTGAGCTCCAGCTGACACAGGCTGTTTCAAACTGTCA-CA-------GAGGGCACCAAAGCCAGCGTCCTGCAGTCCCACATTGCCTTACCAGAAATTTTAACTAGTTGAAAGGAACCCCAGAGGCTCTCAAC---TCTCATAGC s rn2.chr12 6923122 342 + 46874691 ------------------------------------------CCCCTCCCTTGCCCTCCTC-------------CCCTCCTCACTTTTCCATCCTAAACATTTTAGGCA---CAGCATCCGTTGGAGACAGGAGGAGATTCTTCATGAGAAG------------------------------------------------ACATGA-----------------------------------------GCTGACACGTCTGAAACGGCCAT-------------------TAAGATT-TCAGTAATGAACCAGCAATGGCA---CGAGGCCATCAGCACTG-ATTTGGAGCTTAGAGTCAGGTGTTAGGGACAGGTGAGCTCCCGCTGCCATGGACTGTTTCAAACTATCC-CAGAGCGTGGAGGGTGCCAAACTCAGCGT-CTGCAGTCCGGAAGTGTCTTACCAGAAATTGTACCTAGCTGAAAGGAACCCCAGAGGCTCTCAAC---TCTCGTAAC a score=20687.000000 s hg15.chr13_random 410614 227 + 414659 AACTCATAATTTTTCTACAGCAGGAGTCTGAAAGTCACTCAGCCATTATGTATCAAGCTCCTtgatactcaaagtatggtccgtggaccagcagcatcagcccccacactggaaacttgtcagaaatgggaaatctcaggtccctctggaacctaatgaatcagaat-ctgcattttaacaagctcccTGTGGGACCCACTCACATCAGAA------AAGCAC------TGCTAGCTGAC s mm3.chr5 2601187 206 - 149719773 ---------------------AAGCA---AGTATTTGCTCAGCTGTTGGGTACCAACCTCCTCGCTACTC----TGTCATCCGCAGACTAAGAGCATCAGCGTG--TGGTGGGAGCCTAGCAGAAGCCCAATCCCCC-AGTCCTTCTCAAAGC--AGGATGAAGCCCGCTGCATT-CAACAAGCTCCCTGTGTGACACACGGACAATGGAAGCCGAGAAGCCCCACTCTTGCTAGCTGGC s rn2.chr12 6923464 210 + 46874691 ---------------------AAGTGTTTGGAGGTTGCTCTGCTGTTGGGTACCAACTTTCTCTCTACTC----TGTCATCCACAGACTAGGAGTGTCAGCATC--TGATGGGAGCCTGGCAGAAGCCCAATCCCCCAAGTCCTTCTCAAAGC--AGGATGCAGCCT-CTGCATTCCAGCAAGCTCCCTGCGTGACACACAGACAATGGAAGCCCAGAAGCCCAACTCTTGCTAGCTGGC a score=15588.000000 s hg15.chr13_random 411435 103 + 414659 TTCAGATAAATTAAATTGTGAAAA-GTCAAATATCGTGGTGGCTCAGATTTATCACACGAATGAGGCCACCATATGCTCATTACAGAAACAAGAAAAAGTGATT s mm3.chrX 23393184 104 + 149996094 TTTCAATACATTAAACCACCAAAGTACCTAAGTCAGTGGTAGCTTGAATCTATGATGTGAATGAGTTCTCCATATGCTTTATACAAAAATAAGAACAGGAAATT s rn2.chr5 52942351 104 - 191625135 TTTCAATACACTAAACCACTAAAGTACCTAATTCAGTGGTGGTTTGAATCTATGATGTGAATGAGTTCTCCATATGCTCTATACAAAAATAAGAACAGGAAATT