##maf version=1 scoring=multiz a score=71999.000000 s hg15.chr15_random 0 483 + 366089 GAATTCCTCGTTCACACAGTTTCTTAAGCTTCCTGGGATGCGACCTGTGATGGCTCGGCGGAGCTCGGTGGCAGCTGTCTCCCTCATCTCCAGTGACACCTGCTGGCTGTAGCAGGCAGTGAGAGGAGTGCAGATGAGATTGGGGGCATCTTTCAACGGACCCTGAGCAAAGCTAAAGGGCTGCGACTCGTTCACGTCGACGACTGCCCTTCGTATCCTGCCTTCCTTGAGGGCCTGTGCTAAGGCTCTCTCGTCCACCAGGCCACCACGGGCTGCGTTCACAAGGAATGCTCCCTGCCTCATCTGCTTTATGGTAAAGTCATTGATGAGGTGGTGCTTAAGTTCGTTGAGACTGCAGTGCAAGG-AGATGCAGTCGCTCTGATACAGCCAATCCTGCAGGGTGTAGACCCTCTGCATGCCCAGGGACTGCTCGATCCCATCCTGCAAGTAGG-GGTAATAAAACATGACGCTGAATCCAAAGGC s mm3.chr3 72584317 461 - 160674399 GAGTTCTTTGTTTACACAGTGTGGTAAGCTTTCTGGGATGCGACCTGCTATTGCTCCATGGATCTCAGTAGAAGCTGCCTCCCTTATTCCTAGAGAGGCTTGTTCACTCTACCTGGCCACGTGTGGCATGCAGATGAGATTTGGTGCATCTTTCAATTGACCCCAAGTGAAGCTAGAGGGCTCAGATTAATGAACATTAAGAGCTGCCCTGGGTATCCTTGACTCTT--------TGTACTAAGGCTTTCTCATCCACCAGGC--------ACCTCATTCA-GAGGAATACTTCTTGCCTTATCTGCTTGATAGTGAAGTCGTTGATGTGGTAATGC------TCCTTCAGACTTCGGTGCAAAGCAGATGTAGCCTCTATGATATAGCAAGTCTGGCTA-ATGTAGACCTTCCACACACCCAGGGACTACTCTACTCTATCCTGCAAGTAGGGAATCATAACATATGGTGCTGTATTCAAAGAC s rn2.chr2 73277541 458 - 246339213 GAGTTCTTTGTTAACACAGTTCGGTAAGCTTTCTGGGATGCGACCTGTAACGGCTCCAGGAATCTCAGTGGCAGCTGCCTCCCTTATCCCTAGAGAGGCTCCATCACTGTACCAAGCTATGTGTCACATGCAGATGAGATTTGGTGCGTCTTTCA-TTGACCCCGAGTGAAGCTAAAGGGCTCAGATTCACGAACATTGAGAGCTGCCCCAGGTATTCTTCACTCT----------GAGCTAAGGCCTTCTCATCCGCCATGC--------ACCTCGTTCA-GAGGAATATTTCTTGCCGTATCTGTTT-ATAGTGAAGTCATTGATGTGGTAATGC------TCCTTCAGACTTCAGTGCGAAGCAGATGCAGTCTCTATGATACAGCAGGTCCTGTGAGATGTAGACCTTCCACACACCCAGGGATCACCCCACTCCATCCTGCAAGTCGGAGGTCATAAAATATGGCACTGAATCCAAAGGC a score=7572.000000 s hg15.chr15_random 483 44 + 366089 TGTGGCTGGAACTGCAAAAGCCTGCTGCGTGCGACCCTAGCCGA s mm3.chr7 121887283 44 + 134401573 CTTGGCTCGAACAGCAACTGCCTGCCCTGTGCGACCTGTGCAGA s rn2.chr1 185505440 44 + 276301343 CTTGGCTCGAACAGCAACTGCCTGCCCAGTGCGACCTGTGCAGA a score=42112.000000 s hg15.chr15_random 527 199 + 366089 TGAGGCCCAGCGTCTTCCCACGAATGCGGGCCACTCCCGAGGCCACCTCGCAGATCTGCTCCATGCTCTGAACCCGCTTGCCTTCCCACAGTGCCTGGTACAGCCATGTGTTCCTCCGGTACATGTTGAGAATGTGGCAGTTGGTGGAATTGGCTGTCTCTTCCACGGCTGCGGACGGGATGTTTCACACAGCAATTCC s mm3.chr7 121890709 199 + 134401573 TGAGGCCCAGTGTTTCCCCTCGGATCCGAGCAGCTCCTGAGGCGACCTCACGGATCTGTTCCACACTCTGTACTCGAGTGCCTTCTCGGAGGGCCTGGTAGAGCCATGTGTTCCGCCGATACAGATTGAGAATGTGGCAGACTGTCGAATCTGCTGTCTCCTCCACTGCAGCAGATGGGATGTTGCACACAGCGATCCC s rn2.chr1 185510127 199 + 276301343 TGAGGCCCAGTGTTTCCCCTCGGATCCGAGCAGCTCCTGAGGCGACCTCACGGATCTGTTCCACGCTTTGTACCCGCGTGCCTTCTCGTAGGGCCTGGTACAGCCATGTGTTCCGCCGATACAGATTGAGGATATGGCAGACTGTCGAATCTGCTGTCTCCTCCACTGCAGCAGATGGGATGTTGCACACGGCGATTCC a score=26208.000000 s hg15.chr15_random 726 140 + 366089 GAGCTCGCTGGCAGCCTTGATGTCCACGTTGTCATAGCCACTGCCCACCCCCACGATCACTCTCAAGGACTTGAAATTTGCCAGAACCTCCCTGGTGAG-GTGATTGTGTGGTGCATCATGGGGCCCACGGCTCTGTTTAG--------------------------------------------------------------------------------------------- s mm3.chr7 121894349 232 + 134401573 GAGCTCGCCAGCAGCCTTGATGTCCACGTTGTCGTAGCCACTACCGATTCGCACGATCACTCTCAGGGCCTTGAACTTCTCCAGGTCTTCCCTGGTGAGGGTGATGGTGTGGTACATCATGGCACCCACAGCCTCATTCAACACCTGT--CAGGGACACGAGTCACAGGTCAGAGCCCCCGGGGTACCATGGAGATTTTGTTGGCAGAATTAATTATAGGATGGAGCCATGGCT s rn2.chr1 185513971 227 + 276301343 GAGTTCGCCAGCAGCCTTGATGTCCACATTGTCGTAGCCACTACCGATTCGAACAATCACTCTCAGGGCCTTGAACTTCTCCAGGTCTTCCCGGGTGAGAGTGATGGTGTGGTACATCATGGCGCCCACAGCCTCATTCAATACCTGTGCCATGGACATGAGTCACAGGTCAGAGTCTCTGGGTACCCA--GAGATTTTGTTAGCAG----AATTATAGGATGG-GACATGGCT a score=32574.000000 s hg15.chr15_random 866 149 + 366089 ----------------AACTTTCTCGTGGATTTCCTGCGTGGAC--TGCATCATAGAAGGCCACGGTGG------CCTTCAGGATGGGCATGTCCACAGTGCAGTCACGGCCGACCAGGAACGCTGCCAGTGAGCGGGGGCTTAGGGGGTCTTTCGTGATCTGGCGGCGAATT s mm3.chr7 121894713 173 + 134401573 AAGGTGAGGTGCAACCCACCTTCTCATGGATTTCCTGAGTGGACTGTGCATCACAGAAGGCCACAGTGGCCAGGTCCTTCAGGATGGGCATCTCCACAGTGCAGTCTCTGCCATCCAGCAGTGCCACCAGGGGGCGGGGGTGCAGGGGGCCGTTCATGATCTGGGGGCGGATA s rn2.chr1 185514198 173 + 276301343 AAGGTGGGCTGTAACCCACCTTCTCATGGATTTCCTGAGTGGACTGTGCATCACAGAAGGCCACAGTGGCCAGGTCCTTCAGGATGGGCATTTCCACAGTGCAGTCTCTGCCATCCAGCAGTGCCACTAGGGGGCGGGGGTGCAGGGGGCCGTTCATGATCTGGGGGCGGATA a score=38980.000000 s hg15.chr15_random 1015 160 + 366089 CCTTCACAAATTCTGTCCAATCGCTGTCTCTTGACTTAGCGCTTATCCAC-AGGGCCATTCTTTACGGAACTTTGCAACTCTCAGA-TCAAAAGGTAAAGCAGTCCTCTAAGAACTTAGGGGAACTCGCAGGAGTCTGTGTGCATGATGCCACTATGAACCC s mm3.chr7 121920979 162 + 134401573 CCTTCACAAATCCTGTCCAATCGCTGCCGCTTGACTTTGTGCTTATCCACAAGGGCCATTCTTTATCGAACTTTGCAACTCTCTGATTCAAAAGGCAAAGCAGTCCGCTAAGAACTTAGGGGAATTCGCAGGAGTCTGCGTGCATTGCGCCACTATGAACCC s rn2.chr1 185540844 162 + 276301343 CCTTCACAAATCCTGTCCAAACGCTGCCGCTTGACTTTGTGCTTATCCACAAGGGCCATTCTTTATCGAACTTTGCAACTCTCTGATTCAAAAGGCAAAGCAGTCCGCTAAGAACTTAGGGGAACTCGCAGGAGTCTGCGTGCATTGCGCCACTATGAACCC a score=14487.000000 s hg15.chr15_random 1175 89 + 366089 AATATAAATTTGTTCACAAACTCTATAGTTCACACGATGGGCTGTCCGTCTCTTTAAGGGAATATAGCTTCATTGGTTCAAAACCATTT s mm3.chr3 72585019 87 - 160674399 AAAATAACTGTGTCAACAAG--CTACAGCTCTGGTGGTGGGCTGCCTTTCTTCTTAGGGGGGTGTGGCTTTATCGGTTCACAACCCTTT s rn2.chr2 73278241 87 - 246339213 AAAATAAGTGTGTCAACAAA--CTACAGCTCTGGTGATGGGCTGCCTGTCTTCTTAGAGGGGTGTGGCTTCATCCGTTCAGAACCCTTT a score=2636.000000 s hg15.chr15_random 1264 15 + 366089 AAGGTGATGAAACCC s mm3.chr7 121977383 15 + 134401573 ACAGTGATGAAGCCC s rn2.chr1 185596489 15 + 276301343 ACGGCAACGAAGCCC a score=5644.000000 s hg15.chr15_random 3515 53 + 366089 TTCCTCAAC--ATTTATCTGAATGATAGTATAATTTATTTCTAATTGCTTATTAT s mm3.chr11 100849264 55 + 122862689 TTTTTCAATCTATTTATTTAACTGAGTGTGTAATTAATATAAGATTGCTTATTAT s rn2.chr10 84532793 49 + 106208427 GTTTTCAAT------GTTTAATGGAGTGTACAGTTCACATAAGATTGCTTATTAT a score=884.000000 s hg15.chr15_random 4738 33 + 366089 TTGTGTT-GAAGGAAACACTTCTGTGATTTGAAG s mm3.chr1 20603973 31 + 195869683 TTCTGTC-AATTGATACACTTGGGTAAAC--AGC s rn2.chr9 23015376 32 + 118059026 TTCTGTAGAATTGAGCCACTTAGGAAAAC--AGC a score=153641.000000 s hg15.chr15_random 4777 898 + 366089 TTTTTTTACCTCTGAACT------TTTTACTGGCCTCCTGCTCCCCAAAGGGACCTTGCTTCTGATGGCTTAGCACAACAAAAAGTCTGTATTGTTGGTCTCAGACACCACTTTCCCGTCCACTATCCTGCGGGGGCTGTTCTTTTGGATAGCTTGCAGGTATTTACTGCTGTCCAGAGCATCCAGGAGATTGAAATCCTCCCCGTCTTCTAGCAGGCGGCAGTAAGTGGCAATCTCAGCCTCCAGCTCGACCTTGATGTTCCACAGGTCCTCGTGCTCTTGGGCGTGG---TACCTCTCTTCCCGGTTTTGGGATAGCTCTGACTCCAGGTGCAGCAGGATCCTGTTGAGCTGCTCCATCTGCG--------------TCTACCTCCCTTAGGCTGTTCTCCAAGCTGACTTTCAGATATCTCATTGAGTCCAGTTCGATATCCAAGGACTGGACTGTACATCTCAACCCCCTGAGCATCCTCTCAGCAGCTCCGATCTCAGCGGACTGCATGGTGACTACTCTGGTGCTCTCCTCAGTCTGCTGGGACCAGTACTTGTCCAGCTCCTCTCAGCTGTTCTCAGCCATCTCGTCATATTGGGCCCAGATGCCTGTCATGATCTTGCCAAGGTCCTGAGACTTGGGGACATCTACCTCCATGGTCAACCAAGAGCTGGAAATCAGGTATTATAGACCTTTAACTTCCTCCTCATGATTC---TTCATGAAGAGCAGCTCTTCCTTGAGGGCCTCCATCTCTGTCTCCAGCAGAGGCTGACTGACACTGGTGTTAT------------------CAGTAATGTCGCACTCCACAAACTGGCACATGGCCAGGTCTGTCTCACACTT-----TAAAGTCATCAGCAGCAAAATGATCATTGTCAGTCTGCAGGATGATGCAGGCACTGTCTGCAGCAGTGGCAAAGATTT s mm3.chr13 114208149 918 + 116242670 TTTTTTTTCCAGTGAGCTCTCAACTTTTATTGATCCCTCAGTCCCCAGGGGTTCCCTCTTTCTC-TGCCCCAGTACCTCAGAACTCTGGTGTCATTAGTCTTGGACACTACTTTGCCATCTATGATCTTACGGGTAGTTGTCTTCTGCACAGTTTGCATGGAGTTGCTAGAGTCCAGGGCATTGTTGAGACTGAAATC---TCCATCCTCCAGCAAGTGACAGTAGGTGGCAATCTCTGCCTCAAGCTTCACCTTGACCTTCAACAGGACTTCATATTTCTGGGTCTGACGCTGCCCCTCTGACCGAGTTTGTGCCAGCTCTGACTCCAGATGCAGAAGGACCCCATTGAGCTGCTCTATCTATGCCTTGTATCGGGCTTCCACATCCCCGAGGCTGTTCTCCAAATTGATGTTCTAGTTTTTCATGGAGTCCAGGTCAATTTCCAAGGTCTGGAGGGTGCATCTCAGCTCCATGAGCATGGTCTCAGCATCCCTGATTTCGGCAGACTTGGTGGTGACAACTGTAGTACTTTCTTCAATCTGTTGAGACTAGAACTTG-------------------------CCAGCGGCTCATACTGGGCGCGGATGTCCGCTATGATCTTGCTGAGGTCCTGAGATTTGGGGGCATCTGCTTCCACAGTCAACCCAGAACTGGCAATCTGGGCTTCCAGACCTTGGACTTCCTCCTCATGATTCTTTTTCATGAACAGAAGTTCCTTCTTGAGCGCCTCAATTTCTGTCTCCAACTGCCGTCTTGTGATATTGGTGTCACCTACCACCATAAGGACTCCATGGATGTCGCTCTCCACAGACTGGCGCATGGCCAGTTCTTTCTTGTACTTGACTCTAAAGTCATCAGCGGCAAGGCGGGCTTTGTCGATCTGTAGGACAATGCGAGCATTGTCCACAGAATTCACAAAAATCT s rn2.chr2 169251171 946 - 246339213 TTTTTTTTCCAGTGAATTCTCAACTTTTATTGGTCCCTCAGTCCCAGGGGGTTCCCTTCTTCTG-AGCCTTAGTGCCTCAGAACTCTGGTATCATTGGTCTCGGACACCACTTTGCCATCCACGACCTTACGGGTAGTTGTCCTCTGGACAGTTTGCATGGAGTTGCTGGAGTCCAGGGCGTCGTTGAGACTGAAATCATCCCCATCCTCCAGCAAGCGGCGGTAGGCGGCAATCTCCGCCTCAAGCTTGACCTTGATGTTCAACAGGGCTTCATATTCCTGGGTCTGGCGCTGTCCTTCTGCCCGAGTTTGTGCCAGCTCTGATTCCAGATGCAGAAGGACCCCATTGAGTTGCTCCATCTGCGCCCTGTATCTGGCCTCCACTTCCCCGAGGTTGTTCTCCAAGTTGATGTTCTGGTTTTTCATCGAGTCCAGGTCAATCTCCAAGGTCTGGAGGGTGCGTCTCAGCTCCAAGAGTGTGGTCTCAGCGTCCCTGATTTCGGCAGACTTGGTGGTGACTATCGTGGTACTCTCCTCAATCTGCTGAGACCAGTACTTGTCCAGTTCCTTACGGCTCTTCTGAGCCAGCTGTTCATACTAGGCGCGGATGTCCGCCATGATCTTGCTGAGGTCCTGAGATTTGGGAGCATCCACTTCCACAGTCAACCCAGAACTGGCAATCTGAGCTTCCAGGCCTTGGACTTCCTCCTCATGATTCTTCTTCATGAACAGCAGCTCCTCCTTGAGCGCTTTGATTTCTGTCTCCAGCTGCAACCTTGTGATGTTGGTGTCATCCACCACCTTGCGGAGTCCATGAATGTCACTCTCCACAGACTGGCCCATGGCCAATTCTGTCTCATACTTGACTCTAAAGTCATCAGCGGCAAGACGGGCATTGTCGATCTGCAGGTCGGTGCGGGCATTGTCCACAGAATTCGCAAAGATCT a score=1458.000000 s hg15.chr15_random 5675 10 + 366089 ttttattagt s mm3.chr11 100192127 10 + 122862689 TCTGATGAGT s rn2.chr10 83885645 10 + 106208427 TCTGATGAAT a score=9056.000000 s hg15.chr15_random 32022 87 + 366089 CTGGGATTGTAGTCTTATAGCACTGTGACCATA-----------GGGCAGGGAGAGGCCATGGGA----------CTACATCTCCCAGGAAGCCCAGCAAGG------------CGCACA s mm3.chr15 2252425 96 - 104111694 CTGAGAGTGCA--TTTGCATCACTGTGACCAAAATGCCTGACAGAAGCAAGTAAAGGTGAAAAGA----------CTCCAGATCTCAGAAGTCCCAGCAAAG------------AGCACA s rn2.chr7 10411655 118 - 139049774 ctgttagtgca--tttatatcactgtgaccaaaatgcctgacagaaacatgtaagggtggaaagacttgtttaagctccagatttcagaagtcccaacaaagaaagcccaaaaaagcaca a score=1330.000000 s hg15.chr15_random 79412 20 + 366089 GGATTCCCTAGGTTAGACCC s mm3.chr10 126992673 20 + 130738012 GGATTCTCCATGTTGGACCC a score=42321.000000 s hg15.chr15_random 79432 764 + 366089 AAACTGAGGATCCTGAAGCTCCTGCTGGGGGATTTGGGGCTGGGGGCACCCTGGGGAGCTGCTGCCAAGGCCATCCACCGTCCATACAGGCCGCCTCCCTTCCCGGCCTGTGATGGAAAGGAGAAGGGGTATGTGAACAGCTGTGGAAGTCAGACTCTCGGGAACTGAATC-----AGGCCCCAGCCCATGCCCCCCAGCCCAGTCCAGCCAACGTGCCCGC-TGTCTTCCCACCCAGCCAGCC-GAGCCCTCAGGATTGTTAGATGGAACCAGGCTCCATCACCACCCAGGCATGGAGGGAAGATGCCCTGGTCCTTAGCAAGCAAGGCCTGGTTTCCAAAGTGCTCTCCGAAGAGGCCTCATGTTTGTGACATCTTAGAAGGTACCTTTCTGCTGTTCTTGCACCCAGCATGTTGGCAAGTCAAGTTCCCCCACTGAGTTCTCCACACATAAGGAGGGAGTCAACACCATTGCTAAGTCGGATCAGCTCAAGGGTCTCCAGTATCAGTTTTATCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGAAAAATCAAGGAACGATCTGTATGGTCACTGACATGGATGAAACCCTTGTGCATAGCTCCATTAAGCCAATCAGCAATGCTGACTGCCTAGTGACTGTAAAGATTGAGGGGACCAT---------------------GAGGCCTTATAT-GGATGAGTTCCTGAGATGACTGGAGGAACTGTTTAAATGTGTTTTCTTCATTGCTCTCTTCATTCCAGACTGAACAAGTATGCAGATCC s mm3.chr10 130621382 765 + 130738012 AAACTGAGGAGCCCGGAGCTGCCACCGGGGGATC-GGGGCTGGGGGCACC-GGGGAAGCCGCCGCCTGGCCCGCCCGCCCTCTGTGCAGGCCGCCTCCCTTCCCGGCCCGGGGAGGAAACGCGAGGGGG-ATGTGAACAGCTGCGGGAGTCGGAGTCTCGGGAGCCGGAGCCCGACGGGCCcccgcccaggccccccagcccagccc---------gcccgcgcgtcttcccgcccagccagcccgGGCCCGCGGGATTGTTAGATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTAGTCTCCAA-GTCCTCGCCTAAGAAGCCCCGTGGCCGCAGCATCTTC-AAGGCCCTCTTGTGCTGTTTCCACACACAGCATGTTGTCCAGTCCAGCTCTTCCACTGAGCTC---ACACACAAGGAGGAGGCCAACACCATCGCCAAGTCCGATCTGCTCCAGTGTCTCCAGTACCAGTTTTATCAGATCCCTGGGACCTGCCTGCTCCCCGAGGTGACAGAGCAAGATCAAGGCAGGATCTGCGTGGTCATTGACCTGGATGAGACCCTTGTGCACAGTTCCTTTAAGCCGATCAACAATGCTGACTTCATAGTGCCTGTAGAGATTGAGGGGACCACGCACCAGGTGTATGTGCTCAAGAGGCCTTACGTCGGATGAGTTCCTGAGACGGATGGGGGAGCTCTTCGAATGTGTTCTCTTCACTG-----------CCAGCTTGGCCAAGTATGCTGACCC a score=37894.000000 s hg15.chr15_random 81519 1073 + 366089 TGTGATGGGTGTGCTGGACCAGTGTGAGGTGTTCTGGGGTTGCCTAGCCCATGAGTCACGTTTGTTCCACCAGGGCTGCTATGTCAATGACCTCAGCCATCTGGGGAGGGACCTGAGGAAAACTCTCATCCTGGACAACTCGCCTGCTTCTTACGTCTTCCACACAGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATAACATTCCAGACA-GCAGCTGCTGCACCTGATATCAGTCTTTGAGGACATGAGTGGAGCAGAGGGCATCTATACTAGCCTTGGGCAGCAGTGGGCCCTTAGCCTTTCCTGCTTCCCAGCAATGGCCATCACAGTAGGGGATTTTCCCACACTGTGCCTTTATGATCAGCCTGAAAGAATGAAGCCTGGAACACCTACCCACATGGGCCTGGAAACAGTGAGAA-GTGATTGAAAAGAGCTTTAGGACAGCTTAGATTCCCAGTGGGTGAATGCCAGACCAAGGATACCCAGAGCTACCTGCCATCAAGTTTTTGGGTTCCCAAGATGTGGGTGTGAGAGAAAGAAAGAGAGCATGTGTGTTTTGTGATGAACTGTGGGCCC-AATATATAGTGTTTCAGTA-GGGGAGAAGCTGAAGGACAGAGACTCTTCCCAAGTTAGCTTTGTCTCCTCTCCTGTCACCCTATGAGACCCTGAGTTCCATAGGGATGAAGACTGTTGAAGGCTCCATTG-CAAACC-TGGTCTTTCTTCAGTGCTGCAAGGCCTATGCCAAGGAGAAAGGAAAAGT---ATGC--CTTTGGGTGTTCCAGACACATATCTTTCTGAA---ATATTTCTCCAGCCAGTTGTTGCAGACAAAAGACGATATTTCTGGGAAGATGGGGACTTATGTCCAGACCAGTACCCAAACCATCAGGTCTTGTGGCCTAAAGGCTATGCTTACTTAAGTCCAGCCA-AGTGCCTGGGATGGATCCTT-TCTGCATCT--CCTCAAG-------------ACTCACCACTTAGGCATAGCCTCAAACCTGTGGGGAAGGAAGTTGTCTCCCCACCCTGCAAGAGGACAAATAACTGATTTCTCTTCTTTCGACTCTGTTTTAAAATTCTCTT s mm3.chr10 130622147 1025 + 130738012 TGTGACTGATCTCCTGGACCGGTGCGGGGTGTTCCGGGCCCGCCTGTTCCGAGAGGCTTGTGTGTTCCACCAGGGCTGCTATGTCAAGGACCTCAGCCGCCTGGGAAGGGACCTGAGGAAAACTGTCATCCTGGACAACTCCCCTGCATCTTACATCTTCCACCCAGAAAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATGGCAGATACAGAGTTGCTGAACCTGATTCCAGTCTTCGAGGAGCTAAGTGGAACTGATGATGTCTACACCAGCCTTGGGCAGCTGCGGGCCCCTTAGCCTTCCTGC-TCCAAGAAACGGCCATCCCAACAGGGGACTCTGCTACACTGTGCCTTTGTGGTCAGCCT-----------------------CACTGACA-GGGTCTGCAAGTAGCCAGGGCGTGTGGGACAAAAG--------CAGGTCACACGCAGAGCAGG---AAATCAGACCAAG---ACCCAGAGCTCTCTG-CACCCCGTGCTC-AGTTCCCAG---GTGGTTGTGTGGGTGTGTGTGCGTGCATGTGC-CCGTCCGGTAAACTATGGTCCTGGGTGCCCAGTTGTGCAGTAGGGGGAGAAGCTGAAAGATAAGGACTCAACCCAAGTCA--TTTGTCTTCTTTCCTGCTATGCTGTGAGCTACTGAGCTTTACAGCCATGAAAACTATTGTAGGCTCCCTCGCCAAACCATGGCTTTCCCTCAGCAT--CAAGACCTGTGCCAAGGAGAAGGGAGAGGCCGGAGGCTGCTTTGGATG-CCCAGACACACATCTTTCAGAAAACACAGAAACCTAGCCAGCAGCTGCAGAC----------ATGTTTGGGAATATGAGAGCATGTTCGCAGAC-----------CCACCAGGTTCTGTGTCCTATGGGCTA----CACCTGGCTCCAGCAAGAATGCCTGCCATGGGCACTTCTCTGTACCCGGGCTCCAGTGCCAGGCCAGCCTCTCACTCCCAAGCCATAGTCCTACTCCCATGGGAAAGGAGGTCTTCTCTCTGCCCTGGAGGAGGACATATAGCTGATTTCTGTTCTTTTAACTC----TTAAAAATCTCTT a score=6703.000000 s hg15.chr15_random 84357 206 + 366089 TTATCATCTTAAACTAGACTATTA-AAATACAAGAGGTTTTACATAAGTCTCATGATAACCACTGGGGGAAAAAAAAACATAGTAA----AGAA----AAAGAGAAAGTAATTAAAGCATACACAAACAACAAAAATTACACATTGGATACAGTGGCTCCTGCTTATAATTCCAACACTTTTGGAGGCCAAGGTGGAAGAATCATAAGCTCCTTg s mm3.chr2 164794133 165 - 181423755 TTATTAGTTTAAAATAGACTGGTATGCCTTCAAGATG-TTTATATAAGCCTCATGATAACCATTGGGAAAAAAAAATCTACCTTAGATGTAGGAC---AAAAAAAAAGTGAACACAGC-TATACAAACACTAAATA----ACAAAGGA-----------------AAAACCCCA---------------AAGAAGAAAGGACAATG--------- s rn2.chr17 6591740 146 - 93540836 TTATTAGTTGAAAACAGAGTGCTCTGCCTTCTGCATGTTTTATATAAGCCTCATGAGAACCATAAGG--AAAGAAACCTACAGTAGATGCAGAACTGACAAACAAAAGTGAACACAGC-------ACCGCCAAACA-----------------------------------CCA---------------AAGACGAAAGGAC-ATG--------- a score=7949.000000 s hg15.chr15_random 85227 125 + 366089 agtggataaatgaaactt----ttaaacctcgtaatatgctgcttacaagagactcaa----ttatgaattaagagcataggctaaaagtgaaaggatagaaaatgatattccatgcaaataatagccaaagg- s mm3.chr2 164794408 132 - 181423755 aacaaatgaatgaatatt-aacccaaatccaattgtatgctgcctacaaaagacttacattactttcagggtcaaacaaacactgggaatgaaagtcaagaaaaagatatcccacagaaataataaccaaaag- s rn2.chr17 6591985 108 - 93540836 AAC----GAATGTACATTAAACCAAAATCCAACTGTTTAC----------------------CTTTTAGGGTCAAACAGACACTGGGAATGAAAGGCTGGAAGAAGATATCCCACAGAGAGAGCAACCAAAAGG a score=2365.000000 s hg15.chr15_random 90215 219 + 366089 ATTGTCCAGAGGCGACTGACAGCACCAATACACTTAATG-AATCAACCAGGAAAAATGGGCCTCTCAGGTGAGGAGGAGGCACAATGGTCACAAAACCCAATCCGT---------TCTCAGCTTTGCATGGTGCTCGCATCTCAAGAAGTGGTGTTAGCCATGTGAACCGTGTTCACTGGACAAGGCCAGAGGAAAGAATATTTAGTACAACACAACTATGGGGCTGCA s mm3.chr11 47405591 190 - 122862689 ATTTTACAAAGGAATTTAATAACACTAATATGCTTAAGGGAACCAACCAAGAAAAATGGGCTTCTAGGGTGACTTGTAAGCATC-TGATTAAACTATTAAGCTCATGCAGAGCAGCCTCAACTTTGTGTGATGTCC--CTTTCCAGAAGTGGGGA----------------GTCCA----ACAAGTCAA----CAAACACATTTACGACAAAA------------TGAA a score=85282.000000 s hg15.chr15_random 90435 1217 + 366089 ATCA--AACTGGTAGT-------GAGAGCATGCAT--GAGGCTTCAGTGGCCGA-GACACTGGTGGCTACCCTTCGG-TGTCACTTAAACCTTTGAGGTGAAGGACATCTTTTTTCCCAACTGGCTCAGAGAAACCA-ATCAACATTAAAATTGAGATTTGTTTTTCTTTTCAAAATTTCTA-----AGACACA--GAGGACTCTAACACTCCAAAAGACATTCAGATATTCTTGCAGCTGAGGACTTGACTGCTCTGTAGAGGGATGGCAGAGCAGCAGCCACCAGCTTTAAGAGCTTTAAGCTCCTCCTCTTATAGGGAAAGGCCACCCCCACACAACCCCCATAACTTCATAGGCTCTGGCTGTTAGGTGCACCTGGGGGACTGTCTTCCTCCCATCTCATTAGCTCTCCAAGACAGTTCAGCTCAATCTAAAACCTACCCTAAGATGGCGGTATGTAGACTCTCCTCCATTCTCCCAGCGCAGTGTGACTTCTGGAGAGTGCTCCCCCATCGTCTTACCTCAAATGATGTGAAAAGAGCTGGTTCCCGGGTAGTTAGATGTTCAGTGACCT--AACAGGCCCAGCATGCGCAGGGCCTGGCCCCACAGCCTGGCACCTCTCTCCT----ACCTGGCCTTCACTTCG-GCCTTTTCTCTTCTGTCACCAATGTCAGGTGATGGTCACCAGTGCCACACTCTCATGAGCTTGGTAAGTAGCAGGGGTGTAAACCCCAACAGATTTCCTGTGACTCTACCCTCTTACCTCCCACTCAAGTGACATTATAAGCATAATTTTATATTTGATCTAATTTATGCATA---ACCTTTTTATAACATTTCTGACAACAGCCCACACAA-CCACATGAGTCTGGGTTACAGAACACACGGGCGAGGCTCGGGTAGCAGGTTTC----ACTTACTTTATTCCAATGTGAAATGAAGAT-TGATGATTTAAAAACAAGACAAAGTTGTTTATCAGCTGTGGGGTGGCTACACTTGCTATCTCATGCTCACTTCCTTTGAAACAAGGTATCTGGACAGACCATATTCATAAGTAAGACTTCGCAAAACCTCAGACAGAAGTTCCAGTCAGACACAGCTCCCTCAGGCTCACAGGGTGGCAACCGCCTCCATGTTAGGCTCTGACAGCAGGCAAGGAAAGGAG-CACAGGCA-GCAGGGGACAGGGAG--GGT--CCGGGACTGTAGGGATCCCCAAATGCCCCAGAGCTATTCTCTGTAGAAGGGCACA s mm3.chr11 47405880 1000 - 122862689 aTCACCAAATTATAAA-------GGGAACATACACAGTAGGCTTAAATGGTCAAAATCATTGGTAAGTACTTAACGGATGTTACTTAG--TATCAAGATCAGAAACATCTTTCTCCC--ACTGGCTTAGGAAAAAAGGATCA-----CAAATTAGGGCTGGTATTTTTCAT--AAAGTCATA-----AAATGTAACTAGGACTTTTGAATCCCTGAGCAT-----------CATGAAGCCAGAAA---GCTTGTTC-----AAGCATGTCTGAG---------------------GCTT-----------GCTGACTGGTTAGGACCACT--------ACTGTGACAAGTCTA------CTGGTTGGC-----CACC----------TCTTCTCTCCACTCCACTAGCCCTACA-------TAAGCTGGCT-TTACAC---TCTTAAAAAACCAG--------CACTCCTCTTTTCTACTTGCCAAA---------------------CCCTATCTACCAGGTACAAGGGAAGGGAATAAGGCACAAGCCTAGCCAGTGAGATGTTCAAAAGACTACAAAAGAATCAGAA--------GCTTGCCATCA---------ATCCCTCTTCCGGAAACACATCTTTCACTACA-TTTTTTTTTCTT----------------------------------------------------------------GTGTAGGGCCCAGCCTAACAACTGAAGTCGCACC------CCTTCCACTTCAGTGAC---TTGAACATAACGTTGAGTTTGACATAATATATACACAATTACCTCCCAGCAGTACTTCTGA--GC--CTCACTCAAGCAATAGGAACAAGTTCCACAGAGCACACAGGAAAGGCTGGGGCAGCAGGTTTCAAAAACTCACTTTATTCCAATGTGAAATGAAGACGTGATGGTTTAAAAACAAGAAAACGTTCTTGAT-AGCTGTGGGGGTGC----CTTGCTGGCCCATGCCCATTCCCTTTGAAACAAGGTCCCTGGACAGATACTATCCATCAGC-AGCTCCAGAAAAGCCCCAAGCAGAGGCTCT-GCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCCTTCAGG---------GACAGCAGACAAAGAGAAGCGACACAGGCAGGGAGGGGAGAGAGAG--GGCAGCCAAGGCAGTAGGAGCCCC--AACACCCCAGAGC--TTCTTTGTATAAGTGCTTA s rn2.chr10 47943975 971 - 106208427 ATGATCAAATTATAAATTATAAAGGGAACATAC----CAGGGTTAAATGGTCAG--TCATTGGTAGGTACTTAATGGATGTTACTTAG--TACCAAGATCAGAAATATCTTTCTCCT--ACTGGCTTAAGAAAAAAG-ACAG-----TAAATTAGGGCTGGTATTTTTCAT--AAAGTCAGACTATCAAATGTT-CTAGGACTTTGGGATCCCCAGTCAT------------ATGAAGCCAGAAA---GCATGTTC-----AAGCATGCATGAG---------------------GCC------------GTTGACTAG---GAGCAACC--------ATTGTGACAAGTCTA------CTAGCTGCC-----CACC----------TCTTCCCTCCATTTCACTAGCCCTACA-------TAAACTGGCTCTTATAC---TCTCAAAG--CCAGTGCT----CCCTCCTCTTTTGTACTTGCTAAA---------------------CCCCATCTACCAGCCACAAGGGAAGGGAATAAGGCACAAGCCTAAATAG----ATGTTCAGAAGACTACAAAA---------------------------------------CCCTCTTCC----ACACATCCTTCACTGCAGCCTTTTTCTCCT----------------------------------------------------------------ATGTAGGGCCCAGCTGGATAGCTGGGGCCATACC------CCTTCCACTTCAGTGGC---TTGAACAT---GTTGAGTTTGACCCAATGTATGTGTAATTACCTCCCAGTAGTACTTCTTACAGC--TTCACTCAAGCAATAGGAACACGTTTCACAGAGCACACAGGGGAAGCTGGGGCAGCAGGTTTCAAAAACTCACTTTATTCCAATGTGAAATGAAGATGTGATGGTTTAAAAACAAGAAAACGTTCTTAGT-AGCTGTGGGGATGC----CTTGCTGGCC---GCCCATTCCCTTTGAAACAAGGTCCCTGGACAGATACTATCCATCAGC-AGCTCCAGAAAAGCCCCAAGTAGAGGATCT-GCCTAAAACAGCTCTCTTAGGCTCAAAGGGTGGCCATCTCCTTCAGG---------GACAGCAGACAAAGAAAAACGACACAGGCAGGGAGGGGAGAGAGAGAGGGCAGCCAAGGCAGTAGGAGCCCC--AACACCCAAGAGC--TTCTTTGTGTAAGTGCTTA a score=38668.000000 s hg15.chr15_random 91762 267 + 366089 AAAGCCTCC-TACTTTTTACTTAAAACCTGGACTTTAAGCCAGGTTGGGCCTGGGAATAGTGGCAGCAAAAGCAGCAGCCAAA--------------------------------TGTATACACTTC-----------------------------------------------AGATGTCTACACTCATGGGCACAGGCATATTCCACACTTGCTGGAACACGAGATGCCTGAGAGGCACCTGTTTCC-CAGCTACTAACTGATGTC-CACACACCCCA-TTCACGTGTCTTCATTTAGGTTTCTGCATCGTATATTTGCTCAGCCAGTGCAAACACATCTTCTAGGGG s mm3.chr11 47407285 333 - 122862689 AAAGCCCCCATCTTTTTTGGCTGAAACCTGGACTTTAAGCCAGGCTGGACCCAGGGGTAGTGGCAACAAAAGCAGCAGCCATAATGTCAAACATATAAATGACCTGAGAAATTG-CATCTGCACGTCATCCACTCAGAACTGACTGGGCTATGTACATCAGGAAGGACGGAGCAAGACATCCACAGGCATGGACACACACA-----CACATCTGCTT--------GATGCTGGGGAGGCACTTGCCCCCTCAGCTG-GAGCTGATGCC-TACACACTTTA-CTTTCGTGTCTTCAATTAGGCCTCTGCATTGAATATTCATTGAACCAGTGCAAAACCATCTTTTAGGGG s rn2.chr10 47945341 315 - 106208427 AAAGCCCCCATCTTTTTTGGC-------------TTAAACCAGGCTGGACCCAAGGGTAGTAGCAACAAAAGCAGCAGCCATAATGTCAAACATAGAAATGACCTGAGAAATTGTTATCTGCACGTCATCCACTCAGAACTGACTGGGCTATATACATCAGGAAGGACGGAGCAAGACATCCACAGGCATGG------ACA-----TACATCGGCTT--------GAGGCTGGGGAGGCACTTGCCCC--CAGCTG-GAGCTGATGCCTTACACACTTCATTTTTCTTGTCTTCAATTAGGCCTCTGCATTGAATATTCATTGAACCAGTGCAAAACCATCTTTTAGGGG a score=80868.000000 s hg15.chr15_random 92040 731 + 366089 TGCAGCACCTGCCCCAC-TTGTTCTGGGAGGGAGTCAAGAGGAATCTGGTCAGCTCCTAATCCCCCAGGACAAAGGTGATGC---------------------CCTCTTTTCAGGACTTACATCCAGCAGCGTCATCTCGGGATGGG-TTTTTCAAACACAAGCAGCATGAGGTAGCAAGCATGGTGTGACAGGCTCAGGGCCATGGGCAGCCGGCTTCTGGAGAAGCAGCACAGGG-CAGGCACATCTGTGGGTGGCACCATGACAAGCCAAGACAGCCTCAGCCCGTAATCCCAACAGCTCCAGCCCAG-ATGGC-ATTCAAATTTTCCCGGATAGTATTGGGGTGCCCGATGCCCATCACTCGCCCTCTCATTAGCACGGCCT--TGTTGGTTACTCAGGGACTAAGGAGAGAGAGTGGGGGATGTAGATCCAGGGTGGGCACTGCCTCACAGCCAGAGTCCACCTGACTGCAGGCCAGCAAGCAAGCCCAAGCAGCTCAGCTCTAGTCACCTCTGGCTGCACTTTTTATGTGTAATTTACACAAAGGCAGCAAAAGGAGGTCAACATTAGC---TGTTGTGAC-ATGAAAGTCTATGCCCCATTAAGACC-TTAAAATGCTATTGTCTTAAGCTATCTTTATTCTAATAAAATTTATACAAATAAACACATACAAGGTGAACTACTATAAAGGAAATATTAGGATTTTTTAAACCCATAAACAGACATGTAAACAGTCACTGTTTGATTGCAGAGAAAGT s mm3.chr11 47410058 667 - 122862689 TGCAGCACCAGCCCGATGTTGTTCTGGGGGAGAAGGAAGA--AACCAAGTCAGTTCC---TCCCC-TGTACAAAGTCCATCC-ACGGTCTGGTCACCCACATTCTCCTCGCCAACACTCACATCCAACAATGCCATCTCAGGGTGATCCTCCCCAAACACAAGCAGCATGAGGTAGCGGGCACGGTACAGGAGGCTCAGGGCTGTGGACAGCTGGCTGCTGGCGAAGCAGTACAGGGCCAGGTGCATCTGTGGGTGGGGTCACGGTGGGTCAGGGTAGCCTCAGGCACCTACACCTACAAGCCAACCCCAGCCTGGCTACTCACATATTCCTGAATGGTGTTGGGGTGCTCAATGCCCATCACCCGCTCACTCATCAGCACGGCCTTCTGTTGATTGCTGAGGGCCTGGAAAGAGATGG-------TATCCATCTCAGGTGAGCACTGCTCCCCAAC-------------------------TGAGCAGCCCCA-----CCCAGCACGGGCTA-----GCCTGCAGTTTCTATCC----TTTGCACACAGGCAGAAGGATAA---------TGGC---TGCTTTGACTGAGGAGGTCTTCGCCACA--GAGACCATCCGAAACTTATCATTCTACATCTTCTT--CCCTAACAAAGCCTATGCAAAAACCAACAT-------------CTGAAAATGCATTA-----ATTTTTAAAAAGCTTTCCTAG-------GACAGCCTCTGGTTGAG---AGAGCAGGG s rn2.chr10 47947930 679 - 106208427 TGCAGCACCAGCCCGATGTTGTTCTGGGGGATAAGGAAGA--AACTACGTCAGTTCC---TCCCCCTACACAAAGTCCATCCCACGGCCTGTTCACCTAGA--CTCCTCTCCAATACTCACATCCAACAATGCCATCTCAGGATGGTCCTCCCCAAACACAAGCAGCATGAGGTAGCGGGCACGGTACAGGAGGCTCAGGGCTGTGGACAGCTGGCTGCTGGCAAAGCAGTAGAGGGCCAGGTGCATCTGTGGGTGGGGTCATGGTGGGTCAGGGTAGCCTCGGGCACCCACACCTACACGCCAACCCCAGCATGGCTACTCACATATTCCTGGATGGTGTTGGGGTGCTCAATGCCCACCACCCGCTCACTCATCAGCACAGCCTTCTGCTGATTACTGAGGGCCTGGAAAGGGATAG-------TATCCATCTCAGGTGAGCACTGCTTCCCAAC-------------------------TGAGCAGCCCCA------CCAGCATGGGCTA-----GCCTGCAACTTCTATCC----TTTGCACACAGGCAGCAAGATAA---------TAGCAGGGGCTGTGACTCTGGAGGTCTTGGCCACACTGAGACCACCTGAAACTTACTGTTCTACA---TCTT--CCCTAAAGTCGTCTATGCAAAAACAAACAGATCTGAAACTTAACTGAAAATGCATTC-----ACTTCTAAAACACCTCCCT---------GACAGCCTCTGATTGAG---AGCCCAGGG a score=43720.000000 s hg15.chr15_random 92952 568 + 366089 ACT---AGAGCACAGGAGGTTCCTGAGCTCTTCCCAGAAAATGGTCATCAAACGATGGAGCAGGGGGAAGCCCAGACAGAACAAGTGAGTCCCTAGGGTCTCCTTAACCTCCCTCAGCTCCTCCACATGGGTTCCTGAGGGAAAGTGAGCAGTCTCCTAACCCCTTTGTTAGGGTTCCAGTCCTGCAGGTCTGGACTCTCT-CATTTTATGCTACCATAGGG-GATGACAATGCAACCCCAGGCTCCTTTTT--TGCCATCCCTCAATGCCAGGCCAGGCCCAGAGCCGTTTGCTGACACAGCCCAGGGGATGCTCAAGGCCCACCTCGGCACAGTCACCTGTAGTGTACT-GAGATGAGCAAGGAGGTGCAAGTAGACACAAATCCCCATGGGCTTGGCCTCA---GCTATGTTCCACAGGCTCAGGGCCTCGCAGAAGAGCTCACAGCCCTCCTTCAGGAAGCCTGCAGATCACACCCTCAGGGAGCAGTGCTCAGA--TGAGCAGGCAGGC---CCCACATCCCCCACCCCATGACGCTCTGTTCCACTTTGCAGGCTTCTGCATTGGCCAGTCCCCACTG s mm3.chr11 47410901 448 - 122862689 CCTTGCAGAGCACAGGCAGCTACTGAGTTCTCCCAAGGACA--GCAAC--AAGAGCTGA-------TGAGCTC--ACGGAACAAGAA----CTTTGGACCTCC-------------------CTACATGGAAACCCA----------------------------------------------------------TTCTCCCTGTTTTA-------ACAGGG-GGTGATGGTGGGGTCCCCAGACCTTTCTTTCATGCAGTCCCAACTAATACGTGACAGCCAGAAGTGC-------CACAGCCTA--------------CACACCTCAGCATAATCACCCATGATGTAGTGGAGGCGGGCCAGAAGACGCAGACAGGCACAGATCTCCACGTGCATGGCTCCGTAGACATTGTTGAACAGGTTCAGAGCCTCGTTGATGAGCTCACAGCCCTCTTTCAGGAAGCCTACGAGGCA----GCCGGGGTGGCAAGGTCAGGACTGGGCAAG-AGACACTCCCGCTTCCCCCAGCCCACAGTGCCACG---CACCCTGCTG-----TACTTTGGCCTGTCCACTCTG s rn2.chr10 47948865 465 - 106208427 CCTTACAGAGCACAGGTAGCTACTGAGCTCTTCCAAGGACA--GCAAGTGAATGGTTGA--------GAGCTC--ATGGAACAAGAA----CTTTGGAGCTCTTGG---------GATGCCACTACGTGGAAACCCAAGGGAGAGC------------------------------------------------ATTCTCC-TGTTTTA-------ACAAGGCAGTGATGGTGGGGCCCCCAGACCTTTC----ATGCAGCTCCAACTAATACATGAGCGCCAGAAGCGC-------CACAGCCAA--------------CGCACCTCAGCATAATCCCCCATGATGTAGTGGAGGCGGGCCAGAAGCCGCAAACAGGCACAGATCTCCACATGCATGGCTCCATAGACATTGTTGAACAGGTTCAGAGCCTCGTTGATGAGCTCACAGCCTTCCTTCAGGAAGCCTAAGAGGCA----GCCAGGGTGGCAAGGTCAGGGCTGGGCAAG-AGACACTCCCATTTCCCCCAGCCCACAGTGCCACG---CACCCTGCTG-----TACTTTGGCCTGTCCACTCTG a score=28374.000000 s hg15.chr15_random 93520 332 + 366089 CTTTCTGGTGAGATGTCCGAGTTGAAGTGAGTGTTGAATGCCACACAGCTGATGGAGCTCACTGCCTTGCACATGTTGTAAAACACCTCCTGGTTACAAGGGTCAGCTGTGGAGAC------ACAGCTTGATGGGAGGTAGGCCCACTCCACCATCAGTAGTGCTGGGTTGCCCTGATCTGCACCTTCCAGAT-ACTTGCT---GAGATATCTGCATGCTTCTCTAAGGGACT-GGGT---CACGAGACACCCCTGGCAAGGACCAGCTGGCAGAA-CAGGCTGGACACTCTCCTTCAGCCTCCCCAGCAGCCCTACCTGTGCTGTCATCTGTGCTGATGATCTCCG s mm3.chr11 47413508 313 - 122862689 CCTGGGGAGAAGATGTCAGGATTGAAGCGAATATCAAAGGCCGTGCTGCTGATGGAGCCAACAGCCTTGCAGGCATTTCGGATCACCTCTCGGCTTCGAGGGTCTACTGTGGAGACAGGCGGGCAA--GGATGGTAGGTAG---------------AGCTGTGC------ACCGTGA-----GCCTCTCACCCAACCCACTCTAGGGATATCTGCCTGCCTCTCTCAGAGATC-ATGACACCACCACCCCCACCCCCCATGGCTAAGCTGCCAGGACCAGCTTGGGCTCTCCAAACAAGCA-----AGGAACCCCACCTGTGCCATCATCTGAGGCGATGGTCTCTG s rn2.chr10 47951415 270 - 106208427 CCTGGAGAGAAGATGTCAGGATTGAAGCGAATATCAAAGGCTGTGCTGCTGACAGAGCCAACAGCCTTGCAGGCGTTTTGGATCACCTCTCGGCTTCGAGGGTCTACTGTGGGGAT------GTGA--GGATAGGAGGTAG---------------AGTTGTGC-----TGCTATGA-----GCCTCTTGCCC-ACCCGCTCTAGGGATGTCTGCCTGC--CCCTCAGAGATCTGTGA-----------------------GCTAAACTGCCACAA--------------CCAAACAAGCA----CAGCAGCCCCACCTGTGCCATCGTCTGAGGCGATGGTCTCTG a score=233481.000000 s hg15.chr15_random 94300 1696 + 366089 GGCTATAGGCACTTT-AATGTGGCTCTTTCTTGAAGCAGCTGCTCAGGCCGGTTCTCGAAGAGAAGTTCCCTCATTATCCACAGGTTCTTGTTCCAGCCCCGTGTCTGCAGAGGGACTAGGGAGGGAGAAAATCTCTCAGCCTGTGCCCCACAACCTGCTCTGAGATAT-CTCTTTTGTTACTTCCTCACGGACAGCATCAAACTTCCAAATGAACAGACCAGCATGGAGCCTCCAGAAAAGTGCACA-GAATTCTGTCTAGTACCCAGATGGAAGGGGGTTCCCAGTGAGGGCAGGGCCAGGCTGCATGCACCTCTTCAGGAATGTTCTCCTCATTGTCCAACTTCAAGGTGT--GCATCCTCTGTGTGTATGCAGTCCATGGCAGGCTCTGCCTGGGGAACCGTCCAGCTGAACACCTGCAATGTGGTGGTGACCCTCTTGAATGAGTGGTTGTGGGCCCCATGGCAGTCATCAGAGAGGGA--GATGCTTAGCCCACCAAGCCGAGAGCCCTGCCACAGC-----CTTCTGTGAGGCCTCCATCTGCTCTGGGTTCT--TGCCCTGAAAGGCTGTCCTGAAGTCAAACAGAAGAAGGTGGGCCTCTCTTCCAGGGCTGCTCTTTATCCCACTGACAGCTCCCTAG----AGGGCGACTAAGACAGCGGGGACA--GATTCCTCAGGCAGAAGGACTGGAGTTTAGGCTGACGGGTTCATTCCATACCCCCACATGAGATGACACAAGGCAGGGGCTGTGGGACAAAGGCATTGCCTTTCCTTCTG--------------------------------------GGATGAG-------------GAATGGCATAGGAGACAGGGTATGGTGGGGCTGGGGTTG-AGCGATGGGCT---------------------TCACTGAGTAAGTGTCCTGGTTATCTGTCCACAGACCCAGAACAAGTGG-CATCCCAGGAGCCTGGGAGGGGCTGGCAGAGACTTACTGGTTCCAGCAAAAG-CCCATGTGGATGCAGCAATGCTG-CCTGCTGGTCCTTGGCTGTAATTACAAACAGGTACTTGAGGTCCCCATGCATCTTGCAGCTCTCAGAGAGTGTGTTCCAGCTGCTCATGGTAGGCACTTTTAGTCACTGAACGTGCTTCAGGAATGGCCAAGCTTGATTAAGCCAGGCGTCTTGCTGTGAGACCCTCCACCCAACTGAGGACCCTCTTCCTTGTTCCCCCTGGCAGTTTCACCTTCCAGTTCTGGTTCT---------AGAGACACGATGGCCCCTCTTGGGCCCCTGGGAGAATGTGCTCAGGTGACACACTGTCGACAGGGCCCATTTCCAAGCCATTCTTCCATTTCCCACTGTTTGAGGGG-CTGAGGC-CGGTGATCAGCACAGGGCCACCCAGGGCCAGCTGTCTGCACCTAAACATCATGCTGGTCTGGATGTCTCAGGGCCAGAACTCTCCAGGTGAGATGGCCTGGTCCTCAGCAC--CTGGCCTCCGTGCTCCTTTTTCCTCTGTTCAA-TCCTGGCCCCAATGCCTCCCGCAACTCTCAGGTCACCATTGGAGAAGATGCTCAGGAAGAACAAGAAGCTGCAGTCAACCCTGCTGAAGGTGGCATATGGGTCCAGGCTCTTGAGCTGGTCTTCGACATGGTACATGTGGATGCAGGCTTTGAGCAGTGTGAGTAGCTCTTTCCGGAAGGAGGG-GAAAACGGTGTTTCCAGGGTCCTACACCCTAGAACGACCCATCTAGCACAGAAAACAGTTTGCAACGTGCTATCATG s mm3.chr11 47416629 1661 - 122862689 GGCTGTAGTCACCTTGAATATGGCTCGTTCTCGGAGCAACCGCTCAGGCAGGTTCTTGCGGGGCAGCTCCCTTGTTGTCTGCAGCTCTTCATTCCAGTCCCGGGTCTGTGGAGGGACCAGGGAGGCAGAGGCAGGCTCAGCCTATGTCTGCTGACCTGCTCTGGGTTATCCCCTTCTTCCACTTCCCTGTGGATAGGCCC-------CTAGAGAACAG------AGGGAGCCTACTGGGAGGTGCATATGA-----GCCTGG----------------------CAGGAAGGGCGGGTCTGGGT----AGCACCTGTCCAGGAATGTGCTCCTCGTAGCCCAGCCTCGAGGTGTAGGCGTCCTCCGCACGCACACAGTCCATGGCATGCTCTGCCTGGGGGGCTGTCCAGCTGTATACCTGGAACGGGGTGGCGATCCTCTCGAATGGGTGGCGCTGGACCCTGTGGCAGGCAGGGGAATGGAAAGGTGGAACACCCCTCCAAGCTTAGAGCCTAGTTGTGAGTGTCTCTTCTCTGAGGCCCTCA-CTGTTCTGGCATCTCCTACCCATGGATGCCAACCAGAAGTCAAATAG-AGCAAATGGGCACCTCTCCCAAGGCTGTT----------------GCCCCCTTGGACTAGGGACTCTCAGGCA-CTGGGACACCATTTCTTCAGGCAGAGGTGCTGCTGTG---------GGGTCCAGCC----------TGTGACTGGAGGCAGGGCAGGGCATG-GTGGCAGAGGCGCTACCTTTTCTTCTGCAGCACAGCAAAGTTCTTTTTGAAGGTTGGGCTGATCTGGTTGAGCAGCTCTACTAGGGAATGGCTGAGGAAGCGGGGGCTGGCAGGCTTGGGGTTGAAGTGGTAGGCCGTGGACCTGTAAGGAGAGGG-TCACAAAGCAGGTGCCGTAAGTATTTGTCATTAGACTCAGAACACGGGGACACGCCATG-GCACGTGGAAGACTAGGAAAGACTTACTGATTCAGGTAGAAGCCCCTCGTCGATGCAGTGATGCTGACTTGCCGGTCCTCAGCAGTGATCACAAACAGGTACATGAGGTCCCCATGCATCTTGCGGTTCCCAGGAGGTGGGTTCCAGCCACTCATGGTAAGTACTTTCAGACACTGCAGGGGCTGCACAAATGGCCAAACATGAGGAGACAGGAC------TTTTGGGATCCTCCCACCA----GGGTCTTACTTCCTTGATGCTTCTAA-AGTCTTACCTTCCAGTCACGGTTCTGGGGCTGCAGGGGACAGAGAGGCCGCTCCCGGCTCCCCGGCAGGATATACTCAGGTGGGGTGCAGTCGATGGGGTCCATCTCCAAGCCTTTCTTCCGCTTCCCACTGTCTGAGGAACCCAAGGCTTGGTGGTCAGCCAGGAACCAACTA--------TTTCTGTTACTTAATGTATCTCTGGCT----TGTCTTAACTTCAGCAAACCCCCA-------------GCCCCCAGCCCTTCAGGCCT---------TTGTCCCTCTGCACAAGTCCAAGTGCCAATTTTTCCCGCACCTCCTAAGTCACCATCAGTGAAGACACTCAGGAAGGACAAGGAGTTACAGTCAACTCCATTGAAGGCATCAGATGGGTCCAAGCTCTTGAGGAGGTCTCTGACATGACGCACATGGATTCGGGCCTCACGCACCGTGTAAGGCTCTGCCAG--AGGAAGG-AAAAGCATTACT---ATAGCCCTG----TTGGAATAACCTGGCTTGCAATGAGA----TTTTC--AGTGTTTTCATG s rn2.chr10 47955095 1636 - 106208427 GGCTGCAGTCACCTTGAAAATGGCTCTTTCTCGAAGCAATCGCTCAGGCAGGTTCTTGCGGGGCAGCTCCCTTGTTGTCTGCAGCTCTTCATTCCAGTCCCGGGTCTGTGGAGGGACCAGGGAGGCAGAGGCAGGCTCAGCCTGTGTCTCCTGACCTGCTCTGGGCTATCCCCTTCTTCCACTTCCCTGTGGATAGGCCC--------TAGAGATCAG------AGGGAGCCTATTGGGAGGTGCATA-GA-----GCCTGG----------------------CAG-AAGGGCGGGTCTGGGT----AGCACCTGTCCAGGAATGTGCTCCTCGTAGCCCAGCCTTGAGGTGTAGGCGTCCTCAGCACGCACACAGTCCATGGCATGCTCCGCCTGGGGGGCTGTCCAGCTGTATACCTGGAACGGGGTGGCGATCCTCTCGAACGGGTGGCGCTGGACCCTGTGGCAGGCAGGGGAATGGGAAGGTGGGACACCCCTCCAAGTTTAGTGCCCAGGTGTGACCTCCTCTTCTCTGAGGCCCTCA-CTGTTCTGGCATCTCCTACCCATAGATGCCAACCAAA------------------GGGCATCTCTCCCAGGGCTGTT----------------GCCCCCTTGAACCAGGTATTCTCAGGCA-CAGGGACACCATTTCTTCAGGCAGAGATGCTGGTGTG---------GGGTCCAGCC----------TGTGACTGGAGGCAGGGCAGGGCACG-GTGGCAAAGGTGCTACCTTTTCTTCTGCAGCACAGCAAAGTTCTTTTTGAAGGTTGGGCTGATCTGGTTGAGCAGCTCTACTAGAGAATGGCTAAGGAAGCGGGGGCTGGCAGGCTTGGGGTTGAAGTGGTAGGCTGTGGACCTGCAAGGAGAGGGGTCACTAAGCAGGTGCCCTAAGTATCTATCATTAGACTCAGAACACGGGGACACGCCAGG-GCACGTGGAGGACGAGCAGAGACTTACTGATTCAAGTAGAAGCCCCGTGTGGACGCAGTGACGCTCACTTGCCGGTCCTCAGCAGTGATCACAAACAGGTACATGAGGTCCCCATGCATCTTGCGGTTCCCAGGAGGGGGGTTCCAGCCACTCATGGTGAGCACTTTCAGACACTGCAGGGGCTGCACAAATGGCCAAACATGAGGAGACAGGAC------TTTTGGGATCTTCCCACCA----GGGT----CTTCCTTGATGCTTCTAA-AGTCTTACCTTCCAGTCACGGTTCTGGGGCTGCAGGGGACACAGAGGCCGCTCCCGGCTCCCTGGCAGGATATACTCAGGTGGTGTGCAGTCGATGGGATCCATCTCCAAGCCTTTCTTCCGCTTCCCACTGTCTGAGGAACCCAAGGC-TGGTGGTCAGCCAGGAACCAACCA--------TTTCTGTTACTTAATGTGTCCCTGGCT----TGCCTTGACTTCAGCAAGCTCCCA---------------CCCCAACCC--CCAGCCT---------TTGTCCCTCTGCACAAGTCCAAGTGCCAATTTTCCCCGCACCTCCTAAGTCACCATCAGTGAAGACACTCAGGAAGGACAAGGAGTTACAGTCAACTCCATTGAAGGCATCAGATGGGTCCAAGCTCTTGAGGAGGTCTCGGACATGGCGCACGTGGATTCGGGCCTCCCGAACTGTGTAAGGCTCTGTCAG--AGGAGGGTGAAAGCATTATT---ATAACCCTA----TTAGAATAACCTGACTTGCAACAAGA----TTTGCAGAGTGCTTTCATG a score=9778.000000 s hg15.chr15_random 107082 105 + 366089 TTTTTTCTTTTTTCAGCTAAACTAATTTATTCTTCTGTATAATTTCACCTTGTTAATAAACCCCAGGCCAAAAAGTGGGAATAAA--GTATTTGTCTGCATCCTGTT s mm3.chr4 44735187 94 + 152921959 TTTCTTTTCTTTTCAGCTAAAATGAATCCTGTCTTTATTTTACTTCACCCTG-------------GACCAAACAATGAGTCTAAAAGGGTTTTGTATTCATCTCTTT s rn2.chr5 68492725 94 + 191625135 TTTCTTTTCATTAGAGCCAAAATGAACCCAGTCTTTATTTTACTTCACCCTG-------------GACCAAAGAATGAGACTAAACGGGTTTCGTATTCACCGCTCC a score=33648.000000 s hg15.chr15_random 107993 519 + 366089 TTAAACTGAGAACGGAGTGGTTTGCTATGATGT-TTTTAAATTCTCACAGACAAGCATTATTCTTTGCTGCCTTTTAGTAAAGGTTAGTTTTAACCAAATTAAAGAAGATTGAATGGATTTTCTTGCTCATAATGGTTGAGTGCAATA-----TCTCATACCTTCTATTAGTTTTCAGTATA-----------------ACTGAAATAACA---------------GAGTGTCAATACTCCATGGAGGGGTGCTCCGCTTGCTAA--GGCTCCCTCCTCTG----------------------GGCTAGGCCTTCT------------------------------ACACCATGGCTGTCCTGC-----------------TCTGGCTGGAGCTGGAATTTGGAT-------------------------TGACCTCTGTGTGTCT--TCCTAGCACACAACAG---------------------------GTGTC-----CAATTAGCAT-----------GGGCAGAATCAAGCTCCTCCCTCTCACCATTT-----ATTTCTCCATTTGTCCCTTGTTGGGAATGGAGAGTCCTGCCACTGAGTTCAGCCCAGGGTTGAAGTTCAAATCTCAGCTGATACTTGGTGGATGTTGACTTTTTTGAGAAGAACTTGGGAGAATAAAACATTATAAAGGCGCTg s mm3.chr4 44735755 635 + 152921959 TTAAAGTGGGAAAGATCTTATTTCTTTCAGTGTCTTTCAGATTCTTACAGGCAAGGGCCACTTTGTGCTGCCTGCCTGCACAGGTTGATTTTAACCCGTGCAACAATGAGAGACTGGA-TTCCTTGACCACAACAGTCAAGATCTGCACAGGCTTTCTAACCTCCTACTAGCTTTTGGGAAC-TTTTAAAGGGCGCTCCAAGGACCCAACATTAAAAAGAAGTGGTGAGTTTCACTACTCCACGT-GGGCCTCTGCTGTTGCTGAGTGACCTGGCTCCCTGAGAAGGAAGTGTGCTCAGGGACGGCCACGCCCCCTCGTGTTGCCCCATCCCTCGCGTTGCCTAGGAAACCACAGC-GTCCTGCTGCAGTTGCTG---GCTTCAGGGTGAATCTGAACTTCAGATGCGGG-AGCCTCCAGGCTTGGGTAAGGACCTCAAAATTGCTGGGCTTGGGGGACAGCGGGCTGATTGAGCAGATAGGAAGATGGGCGTGTCGCAAACAGTAGGCAT----------AGGCCAGAATCAAACTGCTCCTTCCC----TTTGCAACACTCCCCTATTTCTCCC-----------GGAGGAT--------------------GTGACTAGGGTTCCAGTCCCATCTGACATCTGAGGCAGATTGACGGTCCCTAGAAGAGCTCTAGTGGA---------------GCGCAG s rn2.chr5 68493279 600 + 191625135 TTGAACTGGGAAAGGTCTGATCTTTTT----------------------------------------------ACCTGCACAGATTGGTTTTAACCTGAGCAACAAAGGGAGACTGGA-TTCCTTGAC---AACAGTCAAGAGCTGCACAGACTCTCTGATCTCCTACTAGCTTTTGGGAACGTTTTTAAGGGCACTCCAAGGACCCAACATTAAAAAGAAGTGGTGAGTTTCACTACTCCAAGT-GGGCCACCGCTATTGCAGCCTGACTCCACTCCCTGAGAAGGAAGTGTGGGCAGGGAAAGCCCCGCCCC-TCGCGTTGCCCCGCCCCTCGCGTTGCCTAGGAGACCGAGGC-TTCTTGACGCAGTTACTGCTAGCTTCTGGGTGAATCTTTGCTTCAGGTGCGGGGAGCCTCCAGGCTTGGGTCAGGTCCTCCAAATCGCTGGGCTTGGGGGACAGCGGGCTGATTGAGCAGACAGGAAGGTGGGCGTGTCGCAAACAGTCGGCATCTAATTAGCGAGGCCAGAATCAAACTTTTCCTTCCC----TTTGCAGCACTCCCCGATTTCTCCT-----------GGAGGAT--------------------GTGGCTGGGGTTCCAGTCCTACCTAACGTCTTAGGCGGATTGACCATCCCCAGAAGAGCTCAAGTCGA---------------GCACAG a score=35378.000000 s hg15.chr15_random 108807 533 + 366089 TCTTTTATTATTCTTCACCCCTATAGTCTCTCCAGAACTTGTGCACTATGTAGCAGAAAGAATCAAACTCCCCAAGAGTTTGGTTCTTGCTCATGATTTGGTTTTCTGCTGCTTGGCTGCCCCGTCATGTCCCCATTTTGTATAAAATAAGAACCCCCCAGTGAAGTGGAGTTTCTCCCCAGCAGAGGGTCTCACCAAGGCCCCAAGACTGGCACTTTAGG-TGGAGGCTT--------GCCTTTCAACCTCTGAATAATAATTGATACTAAAATTGAGAAGT-TTTCCAGACACCAGCTTCCTGAAAGGAGCATCCAGTCAGAAGACAAGATGAGGTCAGTAGCGAAGGTGACTCAGG--CTGAGTGGGGAAGTCCACCAGCGTATCTGAAGACTGAGCTAGGGGAGGGTTTCC--CTAATGTTCACTCCTTCTGCCCTCCATATATTCCTCTACTTT--TCCCAAACTTCCCTCTGACATCCTCCAAACTTTCTATCTTCCCAGGGCTTTCTTGCCAGGGAG----TCTA------------ATGAAGTAAAAGCTTT--------AAAAT s mm3.chr4 44736390 500 + 152921959 ACAATAATCCTGCCCTTTCCAGAAAGTGCCTGTGGGATTTACACCCTGGGCGCTGGCGAAGAcccactctct----------gtctctcccc-------------ctcctgctcccccgccccccccccACCTAATTTTGTTTGAAAT------------------CTAAGTTTCCCCTTAA-ACAAGGTGTCCTGTGGGATCTAGTGCTGT--CTTTAGGCTGGAGGTCCTAGCAAGAGGGTCCCAGCCTCTGAGTAAAAACTAAGACCAAGTCCCAAGTGTATTTCCAGA-ACG----------AAGAGGAATTGGGCCAGCAGTCAAGATGTCGCCAGTGGGAAAGGTGTCCCAAGTACAGAATGGCAAAGTCTACCAGCAGATCTT----CCAGGCCCAGGT-AGGTGTCCTGCTGGCCTTTGCTCCCTTT-CCCTC---------CCCTGGTCTCCCCACAAACTTTC--CTGGTCCTTTCTAATTTTTCTTTGTTCTGAGAGTTTCCCTGTCTAAGATCCATTTTATTTTTTTTttttattgagaataga-ttttttcatacagtaa s rn2.chr5 68493879 490 + 191625135 ACAATAATCCTGCCCTTTCCAGAAAGTGTCTGTGGGATTTACGCCCTGTGCGCTAGAGAAAACCCACTGT------------GTCTCCTCAC-------------CTTCC-CCCACCCGCTCCACGCACACCTTATATTGTTTGAAAT------------------CTAAGTTTCTCCTTAA-ACAAGGTGTCCTGTGGGATCTAGTGCTGT--CTTTAGGCTGGAGGTCCTAGCAAGAGGGTCCCAGCCTCTGGGTGGAAACTAAGACCAAGTTCCAAGTGTGTTTCCAGA-ACC----------AAGGGGAATTGGGTCAACAGCCAAGATGTCGCCAGTGGGAAAGATGTCACAAGTACAGAATGGCAAAGTCTACCAGCAGATCTT----CCACGCCCAGGTAAGGCGCCCTGCTGGCCTCTGTTCCCTTT-CTCTC-------------AGTTT--CCACAGACTTTC--CTGGTCCCTTCTAATTCTT-TTTGTTCTGCGAGTTTCCCCGTGTAAGAGCTGTTTTA--CTTATCTTTTATTGAGAATAGACTTTTTTCATACAATAA a score=1039.000000 s hg15.chr15_random 109450 38 + 366089 ATTATCTTATTTGATTCCtaatta-----------aaatacaa----------------------aaaaat s mm3.chr4 44736994 59 + 152921959 AAT-TGCTATTGGGTGTATTATAG-----------AAGAACATTGGGGCATTTGGTCTCAAAATTAAAAAC s rn2.chr5 68494371 69 + 191625135 AAC-TGCTATTGGGTATATTATAGTGCACACATAGAAGAACAT-GGGACGTTTGGTTTCaaaattaaaaaa a score=7498.000000 s hg15.chr15_random 109775 61 + 366089 ttaattttttttttaaattataggta-aatttaaattaCTCAGAAATAGTCAGAATTAACCG s mm3.chr4 44737053 59 + 152921959 TTAA---TTTTGGTTAAAAATATTTTTAATCGAAATTATTCAGAATTAGTCTGAATTAACCA s rn2.chr5 68494440 58 + 191625135 ttaa---ttttggtaaaaaaaatatt-aatCAAAGTTTTTCAGAATTAGTCTGAATTAACCA a score=5995.000000 s hg15.chr15_random 109849 43 + 366089 -ATCTTTTTCCCATGCAT--AAGCCTTTCTAATCTTTCTATTCAAA s mm3.chr4 44737309 45 + 152921959 -ATTCTTTTGGAGAGCATAAAAGCAGTTCTTATTTTTCTGCTTAAA s rn2.chr5 68494509 46 + 191625135 CGTCTTTTTGTAGAGCATAAAAGCAATTCTTATTTTTCTGTTTAAA a score=7494.000000 s hg15.chr15_random 110415 70 + 366089 tttcattaatatgtttaatggtatatcatctcataagcacttctccatgtgataaaaaattctttgtaca s mm3.chr4 44738544 68 + 152921959 TTTAATTGCTATGTTTAATGATACACTATTGGGTAATGG--TTTCCTTGCCATAAGACATTTGTGGTCAT s rn2.chr5 68495703 68 + 191625135 TTTAACTAATAGGTTTAATGATACATTATTGGTTAACAG--TTTCCTTGTCATAAAAAATGTGTGGTAAt a score=69088.000000 s hg15.chr15_random 110485 710 + 366089 tcccatttttaatacatatatgtagctccaaagaaaaagcat-----------------------------atcttgtttactcttctaatcctgtagt-atttgaaaactttgtttttc---------caattctttgagataataaaCTGGTTAGGGTTAGTATTTTGGTCCCCATTTAAATTTTCTAAGAGTTGCCTTTCTATAAGTGGCTAAGTGACTGTTACAAGGAGAAGAGCCCTCCTGAAGGGGTGTGCCATGGGGTTGAGGCCTCCCTGCAAAGTGCCTTCCTTGTGGCAGATCCCCATGTGTCTTTCTAAAAT-----------CAGCACAGTCAGACTGAGCGTGATTGGAATTCTGCAGCTGTGACCCCTCTCG-----AATCTTCCTTCAATTCAGATGCAACTAATCTCCTCCTTGGTGGACACCAGGAAGTAGGCTGTAGAGCATTCTGTGACCCTGAAGAATGACACGATGTTCTTGATGAAGAGGGTGGATATTCCTGAAGGAGAAATAATGTTTTCTCAACAGCAGAAGCAGATATCAAGTTTATTCAATGACTGGGTCATGGAAAATCCTGTTCTCTACAGGTTGATGCTACATTCCAGGCAAACCCACACCCTCGGTGTATGCCAGAGGCTTCAGAAACACAAAGGAGCTCATATGAGATGAGTGCCAGGTAGCTATGAAGCCTCAAGAACTTCCACTGCAACAGAAGAT-----AATA-ACTTACTCTGAAGAATTGTTTGCATCTCCCT s mm3.chr4 44738612 726 + 152921959 TTCTGTCTCTAGTAAGCAACTACCCTTCCATCAAAGGATTTTTACTTAGCCCATCTCCTATTACTGAATGGTTCTGGGttattttgctctgtttttgttgttttg----ttttgttttTCATTTATTATCAGTTTCTTATGATTACAAAAATAATTGTATTCACTAAATGATCTTCATTCAAAATTTTCTACATATACCTTTCTTGAAAC-ACCCTGTGCCTGTT--------AAGAGATCTTCTGCACTGGGTGGGCATGGAGTCTGAG------TACAGGGAGCCTTCTGGATGCCAGGTGCCTCCATGTCCTCCTACAACGTCCTCCGACATGTCACAGTCGTCAAGAA-AGGCTTGGGCACCTGAAACTTTCACATTACCTGCGTCTCATCTTTCCCGTACTCAGGTGCAGCTGGTTCAGTCTCTGGCAGCTACCAGGAAGCAGGCTGCAGAGCGTTCTGAGACTCAAAAGAATGTCAAGACACCCATGATGAAGAAGGTGCCATTACCTGAGGGGGAAACTATGACCCCTCGCCAGAGGAAGTGGGTGCGTAGCCTCCCCAACGACTGGGTCACGGAAAACCCAGTTCTTTATAGGTAAGCCTTGC-TACCAAG-----CCACATTGCAGGTCCCC-----AGTCTTCAAAGACTCAGA-----------AAGATGTATGCCCAGGAGGAACAGAGCCTCAAGTACCTTCTCCAAAACAGGGAGCTT---GTCACATCTGCTTGGAAAGATGTTTCTCTCCTCCCT s rn2.chr5 68495963 718 + 191625135 TTCTGTCTTTAGTAAGCACCTACCATTCCATCGAAGGAATTTTACTCAGCCAGTCTCCTTTTACTGAATGgttctggtttattttgctttgttttcact-ttttg----ttttgttttTCATTTATCATCCGTTTCTTATGGTTACAAAAATAATTGTGTACACCAAATGATCTTCATTCAGAGTTCTTTACGCACACCTTCCTTGAAAC-GCCCCATGCCTGTT--------AAGAGATCTTCTGCAGTGGGTGGGCATGGAGTCGGAG------TACAAGGTGCCTTCCGAATGCCAGGTGCCTTCATGTCCTCCTACGTC--------ACATGTCACAGCCATCATGAA-GAGCTCGGGCACCGGAAAAGTTCACAATCCCTGTGCTCCATCTTTCTTGCACTCAGGTGCAGCTGGTTCAGTCCCTGGCAGCCACCAGGAAGCGGGCTGCAGAGCATTCTGAGACTCCAAAGAACGTCAAGACACCCATGATGAAGAAGGTGCCGCTACCTGAGGGGGAGACTATGACCCCTCGGCAGAGGAAGTGGGTGCATAGCCTCCCCAACGACGGGGTCACGGAAAACCCAGTTCTCTATAGGTAAGTCTCGC-CACTGGG-----CCCCATTGCAGGGGTCC------GTCTCCAGAGACTCAGG-----------AAGATGTGTGCCCAATAGGAACAGAGTCTCGAGAACCTTCTCCAAAAACGGGAGCTTTTGGTTA-ACCTGCTTGGAAAGACGTTTCTCTCTTCTCT a score=26051.000000 s hg15.chr15_random 111424 300 + 366089 CATTCCAAACAAAACCTATTATCATTCATCGTCAGTTCATTTAGTCCTGTTTTACTCATACTTGTTTTACTCTATCTT--GTAAGCA--CATATGC----------TTCTCTGCT--AGAATTAGAGAAA--TAAATTAGTCCACTGATAGTGTTTCAAAGTTATATAAGTCATTCTATCAGAAGCCTGTTTATAGGAGTACTTGGCACAGTTATTTC-TGTGGGTCTCTGAGACATTCTTATTTTGTTGAAGACAAAGCCCTGTGGCCTGGAACTGATTTGCAAGCACTTTTAGAAAAATAGCCGAGTACAACCAAAA s mm3.chr15 60372909 294 + 104111694 CATTGGAGAGAAATTCTTTAGCCACTCA---TCAGTCAACCT-GTCCTCCATGATTAATTCTTATTCTCCTTAATCTTTGATGAGCAGTCATGTACCTACAGTATCTTTTCAACTACAGAGGTGTGGGAATCTCAACTCTTACATTGCTA-TGGCCCATGATAATTTATGAAGCACCATCAGAGGCTT--------------CTGGCATGATCTTTTTCTGTGGGTATCTGGGATAGTTCTATTTTGTTGCTGATAAAGCCCCCTGCCCTA------ATTTGCTGGTGATAGTTAGGAGGTGTCAGAGTATAAACACAA s rn2.chr7 88966175 294 + 139049774 ccttgcagagaaatcttacagccactca---tcagtcaatct-gtcctacatgattaattcttgttctacttaatctttgatgagaagtCGTAGACCTACAGAACATTTTCAACTATAGAGTTATGGAAATCTCAACTCTTACATGGCTA-TGGACCATGATTATTTAAGAAGCACCATCAGAGGCTT--------------CTGGCATGGTCATTTT-TGTGGGTATCTGAG---GTTCTACTTTGTTGCTGATAAAGTCCCCTGCCCTATATCTAATTTGCTGGTAACTGTTGGGAGGTGTCAGAGTT--AGCACTG a score=2101.000000 s hg15.chr15_random 114629 34 + 366089 ATTGAGATAAAATAAATGTGCAAACATCTAAATA s mm3.chr6 92879786 34 - 149950539 ACTGAGATAAAATAAATGGATAAACATTAGAATA a score=1497.000000 s hg15.chr15_random 114770 31 + 366089 TAAATAAAAGAGTAAATTTGGTAATAGATGA s mm3.chr6 58280043 17 + 149950539 taaataaaag--------------taaatga s rn2.chr4 99771256 16 - 183307734 TACATAAAA---------------TAAGTGA a score=183.000000 s hg15.chr15_random 114801 16 + 366089 ATAACTTATTTTATAT s mm3.chr6 92707472 12 - 149950539 aCAAGTTTTTTT---- s rn2.chr4 99369894 12 - 183307734 ATTCTTTTTTTT---- a score=3004.000000 s hg15.chr15_random 114817 70 + 366089 CAGTATAATGTGTATTTAAGAGGTTTTTGTCACTAAATTATTAAATATTGAGTGC---AAATCCTATATACTG s mm3.chr6 67026908 70 + 149950539 CAAATTGTTGTATAAATAAGAGGAAAATTACACT---TTTTTAAAAATCTGGTGCCATAATTTTTGCATACTT s rn2.chr4 92977851 69 + 183307734 TAAATTGTTTTA-AAACAAGACAAAAACTACCCC---TTTTTAAAAATCTGGTGGCATATTTTCTGCATGTTT a score=53629.000000 s hg15.chr15_random 114887 391 + 366089 TTTGAACAAT---ACTATTATTTTCTCAGCAAAGATCAGCACTGAAAGACTGATTCCTGCATAGCCACTGACCAC-AGCTTCTGGAACAACAAAAGCATTGAATCATTAATCCTGAATGTGGCCAATGAGCAAGAGATGAGGAAATCTACCCAGTTCATGACCACAAAGCAACTCACCAGCAGCTGGATGGCCTGGGTAGCTTATTTCTCTGGAGAGACTCTTAGACAGTGACTCCTGATACAGAGATGCTGAGACTGCATTTTGTGCCTGGAGGAGAGAATTACCACGTGTG-ATTTGAGAGCATCAGTGTTCCTCCAGAAGAGACATTTCTAAATGCTGCTAGTGTGAAAAATGAGCTTATGTTCACGTAGCCCCTGGGGGAAGAAAAACAGTA s mm3.chr6 92729891 393 - 149950539 TTTGAGCAAGTTAATTATTCTGTTATCAGAACTGATTTGTACCAATGGAGTAATTGTAGGATAGGCATTCATCACAAACTTCTGAACAGTCAGGATGACTGGGTCATACATCCATAACAGGACTGAGGTGGATGAGATGATGAAGTCCACCCAGTACATGACCACAAAGAAAACCACCAGCAGCAAGATGGTCTGGGTGGCCTTTTTCTCAGGGGATGCTCTCAG---GTGTCTGATGCTATGAAGATGCTTGCACTGCCTCTGATGCCTGAACAAGATTATCACCATGTATGTACTTGTAATCAGCATGACTCCTACAAGAAACACATCTCTAGAGGTTGTTACTGTTAAAATCAATCCCCTGATAATATAGTTCATTGGGAAGAGAGAACAGTA s rn2.chr4 99414669 393 - 183307734 TTTGAGCACATTAATTATTATGTTATCAGAACTGATTTGTACCAAAGGAGTAATTGTGGGAAAGGCATTCACCACCAATTTCTGAACAGACAGGATGACTGGGTCATATACCCATAGCAGGATTGAGGTGGATGAAATGATGAGGTCCACCCAGTACATGACCACAAAAAAAGCCACCAGCAGCAAGATGGTCAGGGTGGCCTTTTTCTCAGGGGATGCTCTCAG---GTGCCTGATGCTATGAAGATGCTTGCATTGCCTTTGATGTCTGAACAAGATAATCACCATGTATGCACTTGTGGTCAGCATGACTCCTACAAGAAACACATCTCTTAAAGTTGACACTGTTACAATCAATCCCCTGATGATGCTGTTCATGGGAAAGTGTGAGCAGTA a score=84192.000000 s hg15.chr15_random 119972 1249 + 366089 GTCTTCACTGAGCATGTGCTC-ATACAGTTTTGTAGccaactcttcatt----ttacaacaggaagactgagacctcccaaaaaggcaaagactggtccagatcccagaaattgggcagagcacagagtattagggagggatccagcttcctaggcctt---gcATGCACCCCACCCATCAGGTTTGCTTTGGAAATGAGA-GCCCATGA-GTCCTGGAAAACCCTGTGCTCTACTTTC-TACCTGGGCTTTCTACTCTTCAATGTTGTCACATAGGCGTGCAGGCA-TGCACACAC-AAACACATCACACACAC---ACAGGCTTCTAAAGTGGAGATCTAAAGTGGAGATTCTAAAGTGAGGTTAGGGAAGAGGAAACCAAAGAAGTGACAAAAGGGGAAGAAACAGTAGATGCAGCTTTGCCATGAGGCAGAGGCATCCACTCCCCCAGCTACATGACCAGGAGCTG--------ACAGCATGCGATG--------AAGGATCCTCCAGGTTCCCTGGGTTCTTCCAAGCCTGGGGACTTTCCCAGCTGTTTCAAGAGGACAGGACTGGGGTTGTGACTCCCACTTCTGTGGGCACCTGGAACTAAAATGAGCTATGCCCTCCACCCACCACCCCGTGTGATATAAAGACAGGCTACGGGAAAGAAAGCCTTTGTTTTCTCCCTCATAAATAGGGGTACTGAGAAGGAATAAT-----------ACCAAGG-ATTCTAGATACTCATAG-GTGTCTGCCGCCCTTGGC---TTTTCATTGGTAAATCACTGTGCTTTGAGACTCTGGGAAGAGGCTTTTCAGTTTCTAGAGGTCCTTCAGAGAAGAGAGAGG----CCTAGAGACTTGGGCGGATGAGGACTTGGAATAAAGCACAATGTGACAAT------GCACTGGGCTCTGGAGTGTGGGGCCCAGAAAAAAATACTAGTTTTTTGGGCTGTCCTTGAGGTCCTCATTCGGAAGTGGAAG-AAAATAATGTC----GCCGAATGCTGTTAAAATGTTTAATGAGTGCACAGCACACCCAACGAGG---CTGAGGAAAATAGGAATCAAGGGAGGCTTCCGAGGTCACTTTTATGGCCCTTGGAGCCTTCAGATACTGCTCCTTTTCCCAG--GGGTCCCTGAAGAGCCACTGCCTTGAGAATTCCCCAGTGCAGGTACCTGTTTTGT-----GATGCTTCTGCCT-GGGACTTCAGTGCTAGCGGAGGCCTCTAGGTGGCGGCAGACCCCGTGTTTCTTGTGCCCGCTGGACTTTACTGGAGTAGC-TGGAGCCGGGGGAG--AGACAG s mm3.chr2 28778640 1120 + 181423755 GTCCACGCAGAGCGTGCACTTAACGCTGTTCCGCGTCCAACCTGTCCAACCGGGTACAATCGAGCAACTGAGGTCT-GGAAAGAGGC--------------ATGCCAGG---TGGGCGGGGACCAGCGGAGAAGGGAAGGCTTCCGGCCCGTGGGGTCA---GGGCTCAACCTTCGCGTAGGGTTTGCTTGGGGAATGAA--TCTCCTGAGGTCCTGGGGAACACTG---GCTAACCCCCTCCTTGTGGAACCTACCCAA----------ACACGAGCGCACACCCCCTACTCACTCTCGATAGAT-CTACAGACTTCCTAGGTTTCCGAGGAAGGGTGGGACAGTGGAGGTGGTGTGGTGAGGT---GGAAGAAG-----------------------GAAGAGGCAGAAG--GCAGCCCTGTCTTGGGGCTGAGGCGTCCAGTCTCCTAGCAACATT---TGGGGGTGCCCATAGTACGAGAGGCGCTGATGGACCGAGAGATGTT-AAGATTCCTGGGGT--TTGCTTGTCTGGGGCCATCCTCAGACTGGCCTGGAGGGCAGGGCGGAGGTCCT---------------------------------------------------------------TAGTGTGGAGG-AGGCTGCTG---AGGAGACATTAGTTTCCTCCTTTGCACTTTAGGATGCTTGGCCCTTGTGACTCGTCCCCGCCCCCGGGG-GTTTCAGGGGCTTGTGGAATGTCTTTTGGCTTTGGTTCTCCTACAATGACCCATAA----------AAATTCTAGGAAAATGCCTTCC---CCCTGGTGGACTTGCTAAGCAG-----------CCTTAGGGTTTGAGTGACTTAAAGGCCAGAGTAACTAG-AGGGAGGCAAA-CTCTAGACCATTCCTCCAGGATCCAAGGACAAGACCACC---CTAG----TTAGAATG----TGTGATTCTTATTTG-AAATGGGGTCAGGGTCATTGCCTAGACTGAAAG-----AGGAGGCCCCCTGAGTGAGCCAGAGTCCCA--GAGCCATCAGAAGGAAAGAGGGGTGAAATGAGGCTCCTGAGGTCTTTGTGGTAACCCCTGAAACATACAGGTCTTGTTCCTTTGCCCAGCTGGGGCCTGGGAGACCTGCTACCTTGACAACCCGCAAACAAAAGGTAGTGTTTTGTTTTCAGGGTTTCTTGCCTGGGGGCTGTAGTGCTGGTACTGACCACTGGGGGGCAGCAGTATCCTTTT-----------------AGTCAATGGAGCAAC-TG----CGGGGGAGGGGGACAG s rn2.chr3 7567003 1105 + 165924081 ATCCACGCAGAGCGTGCACTTAACACTGTTCC------AACCAGTCTTA----GTACAATCGAGAAACTGAGGTCT-GGAAAGAAAC--------------ACGCCAGG---TGGGCGGAGACGAGCGGAGAGGGAAAGGCTTCCGGCCCCTGGGGTCATCAGGGCTCTAACCTCGCGGAGAG----------GAATGAGAGTCTCCTGAGGTCCTGGGTAACACTG---GCTAACCCC-TCCTCGTGGAGCCCACCCGG----------GCACGAGCCCACACCCC-TACTCACTCTCGGTAGATTCTACAGACTTTCTAGGTTTCCGAGGA-GGGTGGGACAGTGGAGGTGGTGTGGTGAGGT---GGAAGAAG---------------------------AGGCAGGAG--GCAGCTCTGTCTTGGGGCTGAGGCGTCCAGTCTCCTAGCAACATT----GGGGGTGCCTATTGTACGGCAGGCGCTG-TGGACAGAGAGATGCT-AAGATTCCCAGGGT--CTGCTTGTCAGGGACCATCCTCAGACTAGCCTGGAGGGCAGGGCGGAGGTCTT---------------------------------------------------------------TAGTGTGAAGG-AGGCTGCGG---AGGAGACCTCAGTTTCCTCCTTTGCACGTTAGGATGCTTAGCCTTTGGGAC-CGCCCCCTCCCCGGGGGCGTTCCAGGGGCTTGTGGAATGTCTTTTGGCTTTGGT---CCTTCAATGACCCATAA----------GAATTCTAGGAAAATGCCTTCC---CCCTGGTGGACTTGGTGAGCAGAGAGCGAGTGGCCTTAGGGTTTGAGTGACTTAAAGGCCAGGGTAACTC--AGGGAGACAAAACTCTAGACCATTCCTCCAGGGTCCAGGGACAAGACCACCACCCTCG----TTAGAATG----TGTGGTTCTTATTTGGAAATGGGGTCCGAGTCATTTCCTAGACTGAAAG-----AGGAGGCCTCCTGAGTGAGCCAGAGCCCCA--GAGGCATCAGAAGGAAAGAGGGGAGAAATGAGGCTTCTGAGGTCTTTGTGGTAACCCCTGAAACCTACAGGTCCTGTTCCTTTGCCCAGCTGGGGCCTGGGAGACTTGCTACCTTGACAACACGCAAACAAAAGGTTGTGTTTTGTTTTCAGGGTTCCTTGCCTGGGGGCTGTAGTGTCGGTACTGGCCACTGGGGGGCAGCAGTGTCCTTGT-----------------ACTCAATGGAGCAACTTG----AGGGGGAG-----CAG a score=8974.000000 s hg15.chr15_random 125083 47 + 366089 CCTTAA---CTAGTCCCAAAGGCAGCTTGGTTAAGTGTAAAGTCCCTTTT s mm3.chr12 74845148 47 + 114462600 CCTCAA---CAGGTCCCAAAGGCAGCCTGGGTAAGAGCAGAGTCTCTTTT s rn2.chr6 98999251 50 + 146362310 CCCCAATAGCGGGTCCCAAAGGCAGCCTGGGTAGGGGCAGAGTCTCTTTT a score=233459.000000 s hg15.chr15_random 128649 1694 + 366089 TTTCTGTGCTAGATGGGTCGTTCTAGGGTGTAGGACCCTGGTAACACCGTTTTC-CCCTCCTTCCGGAAAGAGCTACTCACACTGCTCAAAGCCTGCATCCACATGTACCATGTCAAAGACCAGCTCAAGAGCCTGGACCCATATGCCACCTTCAGCAGGGTTGACTGCAGCTCCTTGTTCTTCCTGAGCATCTTCTCCAATGGTGACCTGAGAGTTGCGGGAGGCATTGGGGCCAGGA-TTGAACAGAGGAAAAAGGAGCATGGAGGCCAG--GTGCTGAGGACCAGGCCATCTTACCTGGAGAGTTCTGGCCCTGAGACATCCAGACCAACATGACGTTTAGGTGCAGACAGCTGGCCCTGGGTGGCCCTGTGCTGATCACCG-GCCTC-GGCCCCTCAAACAGTGGGAAATGGAAGAATGGCTTGGAAATGGGTCCTGTCGACTGTGTGTCATCTGAGCACATTCTCCCAGGGGCCCAAGAAGGGCCATCGTGT---------CTCCAGAACCAGAACTGGAAGGTAAACTGTCAGGGGGGACAAGGAAGAGGGTCCTCAGTTGGGTGGAGGGTCTCACAGCAAGACGCCTGGCTTAATCAAGCTTGGCCATTCCTGAAGCACGTTCAGTGACTAAAAGTGCCTACCATGAGCAGCTGGAACCCACTCCCTGAGAGCTGCAAGATCCATGGGGACCTCATGTACCTGTTTGTAATTACAGCCAAGGACCAGCAGG-CAGCATTACCGCATCCACATGGGGCTTTTGCTGGACACAGTAAGTCTCTGCCAGCCCCTCCCAGGCTCCTGGGATG-CCACTTGTTCTGGATCTGTGGACAGATAACCAGGATACTTGCTCAGTGTCCATCCACTCCTTGT-GGTCTGAAGCCTATCGC-TCAACCCTAGCCCCACCAG-ACCTGCTTCCTAAGGCATTCCTCA-------------------------------------------------TGC--CAGAAGGAAAGGCAATGACTTTGTCCCACAGCCCCTGCCTTGTGTCATGTCATGTGGGGGTATGGAATGAATCGGCAGCCGAAACTCCTGTCCTTCTGCCTGA--GAATTCTATCTTCTCTGTCTGAGTTACCCT----CTAGGGAGCTGTCAGTGGGAGAGAGAGCAGCTGTGGAAGAGAGTCCCACCTGCTTCTGTTTGACTTCAGGGCAGCCTCTCAGGGCA--AGAACCCAGAGCAGGTGGAGGCCTCAAAGAAG-----CCTGTGGCAGGGCTCTGGGCTTGATGGGCTGAG-CATCTCCCTA-TCTGCTGCCTGCAATGGGGCCCAGAACCATCCATTCAAGAGGGTCACCACCATATTGCAGGTGTGCAGCTGGACGGTTCCCAAGGCAGAGGCTGCCATGGACTGCAAGCACACAGAGGATG--TACACCTTGAGGGTGGACTATGAGGAGAATATTTTTGAAGAGGTGCATGCAGCCTGGCCCTGCCTTCACTGGGAACCCCCTTCCTTCTGGGTACTAGACAGAATTC-TGTACACTTTCCTGGAGGCTCCATTCTGGTCTGTTCATTT-GGAAGTTTCAGGCTGTCTGTGAGGAAGT-AACAAAAGAGATGTCTCAAAGCAGGTTGTGGGGCACAGGCTGAGAGATTTTCTCCCTCCCTAGTCCCTCTGCAGGCACGGGGCTGGAAGAAGGACCTGTGGATAATGAGGGAACTGCTCTTCGAGAACCGGCCTGAGCAGCTGCTTCAAGAAAGAGCCACATTAAAGGTGCCTATAGCC s mm3.chr11 75444416 1644 + 122862689 TCTCATTGCAAGCCAGGTTATTCCA----ACAGGGCTATAGTAA---TGCTTTT-CCTTCCT--CTGGCAGAGCCTTACACGGTGCGTGAGGCCCGAATCCATGTGCGTCATGTCAGAGACCTCCTCAAGAGCTTGGACCCATCTGATGCCTTCAATGGAGTTGACTGTAACTCCTTGTCCTTCCTGAGTGTCTTCACTGATGGTGACTTAGGAGGTGCGGGAAAAATTGGCACTTGGACTTGTGCAGAGGGACAA---------AGGCCTGAAGGGCTGGGG-------------GCTGGGGGTTTGCTGAAGTTAAGA----CAAGCCAGAGATACATTAAGTAACAGAAA--------TAGTTGGTTCCTGGCTGACCACCAAGCCTTGGGTTCCTCAGACAGTGGGAAGCGGAAGAAAGGCTTGGAGATGGACCCCATCGACTGCACCCCACCTGAGTATATCCTGCCGGGGAGCCGGGAGCGGCCTCTCTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAAGACTTTAGAAGCATCAAGGAAGTAAGACC----CTGGTGGGAGGATCCC------AAAAGTCCTGTCTCCTCATGTTTGGCCATTTGTGCAGCCCCTGCAGTGTCTGAAAGTACTTACCATGAGTGGCTGGAACCCACCTCCTGGGAACCGCAAGATGCATGGGGACCTCATGTACCTGTTTGTGATCACTGCTGAGGACCGGCAAGTCAGCATCACTGCATCGACGAGGGGCTTCTACCTGAATCAGTAAGTCTTTCCTAGTCTTCCACGTGC-CATGGCGTGTCCCCGTGTTCTGAGTCTAATGACAAATACTTACGGCACCTGCTTTGTGA---CCCTCTCCTTACAGGTCCACGGCCTACCACTTCAACCCCAAGCCTGCCAGCCCCCGCTTCCTCAGCCATTCCCTAGTAGAGCTGCTCAACCAGATCAGCCCAACCTTCAAAAAGAACTTTGCTGTGCTGCAGAAGAAAAGGTAGCGCCTCTGCCAC-CATGCCCTGCCCTGCCTCCAGTCACA---------GGCTGGACCCCACAGCAGCA---------CCTCTGCCTGAAGAAATGGTGTC-CCAGTGCCTGAGAGTCCCTAGTCCAAGGGGGC----------------AACAGCCTTGGGAGAGGTGCCCATTTGC-TCTATTTGACTTCTGGTTGGCATCCATGGGTAGGAGATGCCAGAACA-GTGAGGGCCTCAGAGAAGAGACACTCACAACTAGGCTCTAAGCTTGGAGGGGTGTTCCACCTTTCCATTCCCCTGCCTGCCACAGGGTCCAGCGCCACCCATTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGCTGGACAGCCCCCCAGGCAGAGCATGCCATGGACTGTGTGCGTGCGGAGGACGCCTACACCTCGAGGCTGGGCTACGAGGAGCACATTCCTGGACAGGTGC---TACCCAGACCCG----------------CCCTTCCTGCCAGG------------CTCATATGCACCTCCCAGTAGGCTCCC------TCTGTTCTCTAGGG--------GCCTATCCACAGGGAAGTGGAAGAAGGGGATAACCCAGAGCAGGTCAGCAGACATAGGCTGAGCCTGCCTCTGCCTCCCTGGTCCCTCCACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGGTTGCTCCGAGAACGAGCCATATTCAAGGTGACTACAGCC s rn2.chr10 58251715 1617 + 106208427 TCTTGTTGCAAGTCAGGTTATTCTA----ATAGGGTTATAATAA---TGCTTTCACCCTCCT--CTGACAGAGCCTTACACAGTTCGGGAGGCCCGAATCCACGTGCGCCATGTCCGAGACCTCCTCAAGAGCTTGGACCCATCTGATGCCTTCAATGGAGTTGACTGTAACTCCTTGTCCTTCCTGAGTGTCTTCACTGATGGTGACTTAGGAGGTGCGGGGAAAATTGGCACTTGGACTTGTGCAGAGGGACAA---------AGGCTGG--GGGTTGGGG---------------TGGGAGCTTGCTGAAGTCAAGG----CAAGCCAGGGACACATTAAGTAACAGAAA--------TGGTTGGTTCCTGGCTGACCACCA-GCCTTGGGTTCCTCAGACAGTGGGAAGCGGAAGAAAGGCTTGGAGATGGATCCCATCGACTGCACACCACCTGAGTATATCCTGCCAGGGAGCCGGGAGCGGCCTCTGTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAAGACTTTAGAAGCATCAAGGAAG----ACC----CTGGTGGGAAGATCCC------AAAAGTCCTGTCTCCTCATGTTTGGCCATTTGTGCAGCCCCTGCAGTGTCTGAAAGTGCTCACCATGAGTGGCTGGAACCCCCCTCCTGGGAACCGCAAGATGCATGGGGACCTCATGTACCTGTTTGTGATCACTGCTGAGGACCGGCAAGTGAGCGTCACTGCGTCCACACGGGGCTTCTACTTGAATCAGTAAGTCTCTGCTCGTCCTCCACGTGC-CCTGGCGTGTCCCCGTGTTCTGAGTCTAATGATAGATACTTAGGGCACCTGCTTAGTGAC--CCCTCTCCTTGCAGGTCCACAGCCTACCACTTCAACCCCAAGCCTGCCAGCCCCCGCTTCCTTAGCCATTCTCTAGTAGAGCTGCTCAACCAGATCAGCCCAACCTTCAAAAAGAACTTTGCTGTGCTGCAGAAGAAAAGGTAGCACCTTTGCCAC-CGTGCCCTGCCCTGCCTCCAGTCACA---------GGCTGGACCCCACACCAGCA---------TCTCTGCCTGAAGAAATGGTGTC-CCTGTGCCTGAGAATACCTGGTTCAAGGGGGC----------------AACAGCCCTGGGAGAGATGCCC------------------TTTGGTTGGCATCTATGGGTAGGAGATGCCAGAACA-GTGAGGGCCTCAGAGAAGAGGAGGTCACACCTGGGCACTAAACTTGGAGGGGTGTCCCACCTTCCCATTCCCCTGCCTGCCACAGGGTCCAGCGCCACCCGTTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGCTGGACAGCCCCCCAGGCGGAGCATGCCATGGACTGTGTGCGTGCTGAGGACGCCTACACCTCAAGGCTGGGCTACGAGGAGCACATTCCTGGACAGGTGC---TACCCAGACCCG----------------CCCTT-CTGCCAGG------------CTC-TATGCACCTCCCAATAGGCTCCC------TCTGATCTCTA-GG--------GCCTATCCACAGGGAAGTGGAAGAAGGGGATAGCCCAGAGCAGGTCAGGAGACACAGGCTGAGCCTGCCTCTGCCTCCCTGGTCCCTCCACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGATTGCTTCGAGAAAGAGCCATTTTCAAGGTGACTGCAGCC a score=28964.000000 s hg15.chr15_random 130792 332 + 366089 CGGAGATCATCAGCACAGATGACAGCACAGGCGGGGCTGCTGGGGAGGCTGAGGGAGAGTGTCCAGCCTGTTCTGCCAGCTGACTCTTGCCAGGGGTGCCTCTTG---ATAC-AGTCCCTTAGAGAAGCATGCAGACATCTCAGGAAGGACCTGGAAGGTGCAGATCAGGGCAACCCAGCACTACTGACGGTGGAGTGGGCCTACCTCCCATCAAGCTGTGTCTCCACAGCTGACCCTTGAAGCCAGGAGGTGATTTACAACATGTGCAAGGCAGTGAGCTCCATCAGCTCTGTGGCCTTCAACATTCACTTCAACTCAGACATCTCACCAGAAAG s mm3.chr11 75448868 313 + 122862689 CAGAGACCATCGCCTCAGATGATGGCACAGGTGGGGTTCCT-TGCTTGTTTGGAGAGC---CCAAGCTGGTCCTGGCAGCTTAGCCATGGGGGGTGGGGGTGGTGGTGTCAT-GATCTCTGAGAGAGGCAGGCAGATATCCCTAGAGTGGGTTGGGTGA-GAGGCTCACGGT-GCACAGCTCTACCTACCAT-------CCTTGCCCGCC---------TGTCTCCACAGTAGACCCTCGAAGCCGAGAGGTGATCCGAAATGCCTGCAAGGCTGTTGGCTCCATCAGCAGCACGGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCCCCAGG s rn2.chr10 58256742 270 + 106208427 CAGAGACCATCGCCTCAGACGATGGCACAGGTGGGGCTGCTGTGCTTGTTTGG-----------------TTGTGGCAGTTTAGC-----------------------TCACAGATCTCTGAGGG--GCAGGCAGACATCCCTAGAGCGGGT-GGGCAA-GAGGCTCATAGCAGCACAACTCTACCTCCTAT-------CCTCAC---------------ATCCCCACAGTAGACCCTCGAAGCCGAGAGGTGATCCAAAACGCCTGCAAGGCTGTTGGCTCTGTCAGCAGCACAGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCTCCAGG a score=44510.000000 s hg15.chr15_random 131124 566 + 366089 CAGTGGGGACTGGCCAATGCAGAAGCCTGCAAAGTGGAACAGAGCGTCATGGGGTGGGGGATGTGGG---GCCTGCCTGCTCA--TCTGAGCACTGCTCCCTGAGGGTGTGATCTGCAGGCTTCCTGAAGGAGGGCTGTGAGCTCATCAGGGAGGCCCTGAGCCTGTGGAAC-ATGGCT--GAGGCCAAGCCCATGGGGATTTGTGTCTACTTGCACCTCCTTGCTCATCT-CAGTACACTACAGGTGACTGTGCCGAGGTGGGCCTTGAGCATCTCCTGGGCTGTGTTAGCAAAGGGCTCTGGGCCTGGCCTGGCATTGA--GGGATGGCAA---ATAAGGGGCCTGGGGTTGCATTGTCACC-CCCTATGGTAGCATAAAATG-AGAGAGTCCGACCTGCAGGACTGGAACCCTATCAAGGGGGTTAGGAGGCTGCTCACTTTCCCTCAGGGACCCATGTGGAGGAGCTGAGGGAGGTTAAGGAGACCCTAGGGACTCACTTGTTCTGTCTGGGCTT-CCCTCTGCTCCATCGTTTGATGACCATTTTCTGGGAAGAGCTCAGGAACCTCCTGTGCTCTGG---- s mm3.chr11 75451340 448 + 122862689 CAGAGTGGACAGGCCAAAGTA-----CAGCAGGGTG---CGTGGCACTGTGGGCTGGGGGAAGCGGGAGTGTCT-CTTGCCCAGTCCTGACCTTGCCACCCCGG----CTGCCTCGTAGGCTTCCTGAAAGAGGGCTGTGAGCTCATCAACGAGGCTCTGAACCTGTTCAACAATGTCTACGGAGCCATGCACGTGGAGATCTGTGCCTGTCTGCGTCTTCTGGCCCGCCTCCACTACATCATGGGTGATTATGCTGAGGTGTG--------------TAGGCTGTG--------GCACTTCTGGC--TGTCACGTATTAGTTGGGACTGCATGAAAGAAAGGTCTGGGGACCCCACCATCACC-CCCTGT-------TAAAACAGGGAGAA---------------------------------------------------------TGGGTTTCCATGTAG-------------------GGAGGTCCAAAG----TTCTTGTTCCG--TGAGCTCATCAGCTCTT------GTTGCTG------TCCTTGGGAGAACTCAGTAGCTGCCTGTGCTCTGCAAGG s rn2.chr10 58259097 465 + 106208427 CAGAGTGGACAGGCCAAAGTA-----CAGCAGGGTG---CGTGGCACTGTGGGCTGGGGGAAATGGGAGTGTCT-CTTGCCCAGCCCTGACCTTGCCACCCTGG----CTGCCTCTTAGGCTTCCTGAAGGAAGGCTGTGAGCTCATCAACGAGGCTCTGAACCTGTTCAACAATGTCTATGGAGCCATGCATGTGGAGATCTGTGCCTGTTTGCGGCTTCTGGCCCGCCTCCACTACATCATGGGGGATTATGCTGAGGTGCG--------------TTGGCTGTG--------GCGCTTCTGGC--GCTCATGTATTAGTTGGAGCTGCAT----GAAAGGTCTGGGGGCCCCACCATCACTGCCTTGT-------TAAAACA-GGAGAAT-----------------------------------------------GCTCTCCCTTGGGTTTCCACGTAGTGGCAT---------CCCAAGAGCTCCAAAG----TTCTTGTTCCA--TGAGCTC-TCAACCATT----CACTTGCTG------TCCTTGGAAGAGCTCAGTAGCTACCTGTGCTCTGTAAGG a score=81744.000000 s hg15.chr15_random 131869 745 + 366089 CTCACTTTCTCTGCAATCAAACAGTGACTGTCTTTGTGTCTGTTTATGGGTTTAAAAAATCCTAATATTTCATTTATAG--TAGTTTCAGCTTGCATGTGTTTATTTGTATAAATTTTATTAGAATAAAGAGAGCTTAAGACAACAGCATTTTAA-GGTCTTAATGAGGCATAGACTTTCAT-GTCACAACA---GCTATTGTTGACCTCTGTTTGCTACCTTTATGTAATGTATACACATAAAGTACAGCCAGAGGTGACTAGAGCTGAGCTGCTTGGGCTTGCTTGCTGGCCTACAGTCAGGTGGACTCTGGCTGTGAGGCGGTGCCCACCCTGGATCTACATCCCCCACCCTCTCTCCTTAGTCCCTGAGTAACCAAC--AAGGCCGTGCTAATGAGCAGGCAAGTGATGGGCATAGGGTACCCCAATACTATCTGGGAAGATTTGAAT-GCCAT-CTGGGCTGGAGCTGTTGGGATTAGGGTCTGTGGCTGCCTTGGCTTGTCATGGTGCCACCCACAGATGTGCCT-GCCCTGTGCTGCTTCTCCAGCAACCGGCTGCCCATGGCCCTGAGCCTGTCACACCATTCTTGCTACCTCATACTGCTTGTGTTT-GAAAAACCCATCCAGAGATGGCATTGCTGGATGTGAGTGCTGAAAAGGGG---------------------GAAGCACCTTTGTCCTGGGGGATTAGGAGCTGACCAGATTCCTCCTGACTCCCTCCCAGAACAA-GTGGGGCAGGTGCTGCAATTAATGATG s mm3.chr11 75451964 677 + 122862689 ------CCCTGCTCTCTCAACCAGAGGCTGTCCTAGGA-------AAGCTTTTTAAAAAT-----TAATGCATTTTCAG----------------ATGTTGGTTTTTGCATAGGCTTTGTTAGG--GAAGAAGATGTAGAATGATAAGTTTCGGATGGTCTC--TGTGGCGAAGACCTCCTCAGTCAAAGCA---GCCATTAT---------CCTTCTGCCTGTGTGCAAAGGAT----AGAAACTGCAG-----GCTAGCCCGTGCTGGG-----TGGGGCTGCT-------------------------CAGTTGGGGAGCAGTGCTCACCTGAGATGGA-------TACCATCTCTTTCCAGGCCCTCAGCAATCAACAGAAGGCCGTGCTGATGAGTGAGCGGGTGATGGGCATTGAGCACCCCAACACCATTCAGGAATATGTGAGTAGCCAGGCTGGGGTTGGCTTGTAGGTGTAGGTGCCTGAGGCTACCCTGACCCACCGTGACCCCACCCACAGATGCACCTGGCCCTGTACTGCTTCGCCAGCAGCCAGCTGTCCACAGCCCTGAGCCTCCTGTACCGTGCCCGCTACCTCATGCTGCTTGTGTTTGGGGAGGATCACCCTGAGATGGCATTGTTGGATGTGAGTGTTGGCGAGGAGAATGTGGGTGACCAGACCGT-GGATGGACTTTGTACA-GGGG---AGGAACTGACTTGGTTTCTTCC--TTCTCCCCCAGAACAACATCGGGCTGGTGCTGCATGGAGTAATG s rn2.chr10 58259818 689 + 106208427 ------CCCTGGGCTCTCAATCAGAGGCTGTC--AGGG-------AGGTGTTTTAGAAGT-----GAATGCATTTTCAGTTAAGTTTCAGAT---CTGTTTGTTTTTGCATAGACGACTTTAGG--GAAGA---TGTAGAACAGTAAGTTTCAGGTGGTCTCAGTGTGGCCAAGACCTCCAGAGTCACAGCCCCTGCTATTAT---------CTTGCTGCCTGTGTGCAAAGGAT----AGAAGTTGCAG-----GCTAGCCCATGCTGG------TGGGGCTGCT-------------------------CAGTTGGGAAGCAGTGCTCACCTGAGATGGA-------TACTATCCCTTTCCAGGCCCTCAGTAATCAGCAGAAGGCTGTGCTGATGAGTGAGCGGGTGGTGGGCATTGAGCACCCCAACACCATCCAGGAATATGTGAGTAGCCATGCTGGGGTTGGCGTGTAGGTGTGGGTGCCCGAGGCTACCCTGACCCACCATGACCCCACCCACAGATGCACCTGGCCCTCTACTGCTTTGCCAGCAGCCAGCTGTCCACAGCCCTGAGCCTCCTGTACCGTGCCCGCTACCTCATGCTGCTTGTGTTTGGGGAGGACCATCCTGAGATGGCATTGTTGGATGTGAGTATTGGAGAGGAG--TCTAGGTGAACAGGCCGTGGGATGGACTTTGTGTAGGGGG---AGGAACTGACGTAGTTTCTTCC--TTATCCCCCAGAACAACATCGGGCTGGTGCTGCATGGCGTAATG a score=38984.000000 s hg15.chr15_random 132615 277 + 366089 CCCCCAGAAGATGTGTTTACAGTGGCTAAGCAAATACACTATGCAGAAACCTAAATGAAGACACGTGAA-TGGGGTGTATG-GACATCAGTTAGCAACTG-GGAAACAGGTGCCTCTCAGGCCTCTCGTGCTCCAGCAAGTGTGGAATATGCCTGTGCCCATGAGTGTAGACATCT--------------------------------------GGAGTGTAT----------------------------------------ACATT-TGGCTGCTGCTTTTGCTGCCACTATCCCCAGGTCCAAACTGGCTTAAAGTCCAGGTTTTAAGTAAAAAAATGGGAGGCTTT------------------------------------------------------------TTGCCATAc s mm3.chr11 75455071 402 + 122862689 CCCCTAAAAGATGGTTTTGCACTGGTTCAATGAATATTCAATGCAGAGGCCTAATTGAAGACACGAAAG-TAAAGTGTGTA-GGCATCAGCTC-CAGCTGAGGGGGCAAGTGCCTCCCCAGC--------ATCAAGCAGATGTG-----TGTGTGTGTCCATGCCTGTGGATGTCTTGCTCCGTCCTTCCTGATGTACATAGCCCAGTCAGTTCTGAGTGGATGACGTGCAGATG-CAATTTCTCAGGTCATTTATATGTTTGACATTATGGCTGCTGCTTTTGTTGCCACTACCCCTGGGTCCAGCCTGGCTTAAAGTCCAGGTTTCAGCCAAAAAAGATGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTAC s rn2.chr10 58262771 381 + 106208427 CCCCTAAAAGATGGTTTTGCACTGGTTCAATGAATATTCAATGCAGAGGCCTAATTGAAGACAAGAAAAATGAAGTGTGTAAGGCATCAGCTC-CAGCTG--GGGGCAAGTGCCTCCCCAGC--------CTCAAGCCGATGTA-----TGT------CCATGCCTGTGGATGTCTTGCTCCGTCCTTCCTGATGTATATAGCCCAGTCAGTTCTGAGTGGATGACGTGCAGATAACAATTTCTCAGGTCATTTCTATGTTTGACATTATGGCTGCTGCTTTTGTTGCTACTACCCTTGGGTCCAGCCTGGTTTAA-------------GCCAAAAAAGATGGGGGCTTTCATGTGTCTTGGGAGGGGGAGCCAGATGTCT---GGTAGGGTGCAAGGTGAGACCTACAGTGGCTTTAC a score=67750.000000 s hg15.chr15_random 132989 480 + 366089 TGCGTGT-------GCCTTTCTACAGAGAATACTTCTGGG----------------GCATTTGGGGATCC-----------------------------------------------CTACAGTCCCGGACC----------CTCCCTGTCCCCTG----------------------------CTGCCTGTGCTTCTTCCC---------------TTGCCTGCTG------------------------TCAGAGCCTAA----------CATGG--------------AGGAGGAGGTTGCTGCCCT--GTGAGCCTG-------------------------------------AGGGAGCTGTGTCTGACTGGGGCT----------------------------------TCTGTCTGGG------------------------------------------------------------GTTTTGCGAA------------------------GAGCTACTTATGAATATGGTCTGTCCAGATACCTTGTTTCAAAGGAAGTGAGCATGAGGTAGCAAGTGTAGCCACCCCACAGCTGATAAACAACTTTGTCTTGTTTTTAAATCATCA-GTCTTCATTTCACATTGGAATAAAGTAA----TTGAAACATGCTACCCCAGCCTCGCCCGTGTGTTCTGTAAGCCAGACTCATTTCG-TTGTGTGGGCTGTTGTCAGAAATGTTAT---AAAAAAATTATGCATAAATAAGATCAAATGTAAAAGTATGCTTATAATGTCACTTGAGTG s mm3.chr11 75455473 795 + 122862689 TGTGATTGGGCCTGGCCTACCTGTAG------CCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCATGTGCCTGGCCTTGGCCAAGCAGGAGAGGAGGTCCTGCTACAGGCTTTGACTTGCCTCCCTGCTCCCTGTACCCCAGGTGAGCATAACCTTGGGGGCCAACAGTCTGAATGTATCTTTCTCCCCATTTAAACCTGAGCTGCCTAATGCACAGTTGGGTAAGGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGGAGTGATTTGTCACCTC--TGGAGCCTGGCTCCTCCTTGGTCTTTGCCATATAAGCACTTATACAAAGAAGCTCTGGGGTGTTGGGGCTCCTACTGCCTTGGCTGCC--CTCTCTCTCCCCTCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGTTTCAAAGGGAATGGGCATGGGCCAGCAAG----GCACCCCCACAGCT-ATCAAGAACGTTTTCTTGTTTTTAAACCATCACGTCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCCTTTCCTGTGTGCTCTGTGGAACTTGTTCCTATTGCTTGAGTGAG--GC--TCAGAAGTACTGCTGGGAGGTAATTGTGTATATATTATGTCAAACTCAACGTTATGTTC---AAGTCACTGAAGTG s rn2.chr10 58263152 786 + 106208427 TGTGATTGGGCCTGGCCTACCTGTAG------CCTTAGGGTGAAGGGAAGGGGCCAGCGTTGGTGGACCCCACACATCCATGTGCCTGGCTTTGGCCAAGCAGGAGAGGTGGTCCTACCACAGGCTTTGACTTGC-------CTCCCTGTACCCCGGGTGAGCATAACCTTGGGGGCCAACAGTCTGAATGTATCTTTCTCCCCATTTTAACCTGAGCTGCCTAATGCATAGTTGGGTAAGGGGT-GGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCCATGCCTAGGAGTGA-TTGTCACCTCGGTGGAGCCTGACTCCTTCTTGGTTTTTGCCATATAAGCACTTACACAAAGAAGCTCTTGGGTGTTGGGGCTCCTACTGCCTTGGCTGCCCTCTCTCTCTCCCCTCCCTGCCTGTGTCGTTTTTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCCTTTGAGCCTAAGAGAGCTGTTTTAGGCAGATCCTCTACTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGTTTCAAAGGGAATGGGC---GGCCAGCAAG----GCATCCCCACAGCT-ACTAAGAACGTTTTCTTGTTTTTAAACCATCACATCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCTTCCCCTGTGTGCTCTGTGAAACGTGTTCCTATTGCTTGAGTGAA--GCTGTAAGAAGTACTACTGGGAGGTAATTACACATACATTGGGTCAAACTCAAC---ATGTTC---AAGCCACTGAAGTG a score=12506.000000 s hg15.chr15_random 134027 188 + 366089 TTAGAGAGTCCTC--TATGTCT-----TAGAAATTTTGAAAAGAAAAACAAATCTCAATTTTAATGTTGAT-TGGTTTCTCTGAGCCAGTTGGGAAAAAAGATGTCCTTCACCTCAAAGGTTTAAGTGACA-CCGAAGGGTAGCCACCAGTGT-CTCGGCCACTGAAGCCTC--ATGCATGCTCTC-------ACTACCAGTT--TGAT s mm3.chr11 75456623 186 + 122862689 TTCAAAAGTCCTAGTTACATTT-----TATGACTTT--ATGAAAAATACCAGCCCTAATTT-----GTGATCCTTTTTTCCTAAGCCAGT--GGGAGAAAGATGTTTCTGATCTTGATA--CTAAGTAACATCCGTTAAGTACTTACCAATGATTTTGACCATTTAAGCCTACTGTGTATGTTCCC-------TTTATAATTTGGTGAt s rn2.chr10 58264262 190 + 106208427 TCCCAAAGTCCTAG-AACATTTGATAGTCTGACTTT--ATGAAAAATACCAGCCCTAATTT-----ACTGT-CTTTTTTCTTAAGCCAGT--AGGAGAAAGATATTTCTGATCTTGGTA--CTAAGTAACATCCATTAAGTACCTACCAATGA--CTGACCATTTAACCCTG----GTATGTTCCCTTTATAATTTATAATTTGATCAT a score=2335.000000 s hg15.chr15_random 134216 219 + 366089 TGCAGCCCCATAGTTGTGTTGTACTAAATATTCTTTCCTCTGGCCTTGTCCAGTGAACACGGTTCACATGGCTAACACCACTTCTTGAGATGCGAGCACCATGCAAAGCTGAGAATG----GATTGGGTTTTGTGACGATT-------GTGCCTCCTCCTCACCTGAGAGGCCCATTTTTCCTGGTTGATT-CATTAAGTGTATTGGTGCTGTCAGTCGCCTCTGGACAAT s mm3.chr11 75456908 190 + 122862689 TTCA------------TTTTGTCGTAAATGTGTTTG----TTGACTTGT----TGGACTC----------------CCCACTTCTGGAAAGG--GACATCACACAAAGTTGAGGCTGCTCTGCATGAGCTT---AATAGTTTAATCAGATGCTTACAAGTCACCCTAGAAGCCCATTTTTCTTGGTTGGTTCCCTTAAGCATATTAGTGTTATTAAATTCCTTTGTAAAAT a score=79239.000000 s hg15.chr15_random 142079 1820 + 366089 tttttAAAGAGAATTTTAAAACAGAGTCAAATGAACAAAAATCAGTTATTTGTCCTCTTGCAGGGCGGGGAGAC--CTTCCTTCCCCACGGGTTTGAGGCTATGGCTAAGTGGTGAG------------CCTTGGTG---AGACGCAGA-AAGGATCCATCCCAGGCACT-TGGCTAGAGGTAAGTAAAAATAGCCTTTGGGCCAGAAGACCTGATAGTTTGGGTACTCGTCTGGACATAAGTCCCCATCTTCCCAGAAATGTCGTCTTTTGTCTGCAACAACTGGCTGGAGAAATAT---TTCAGAAAGATGTGTGCCTGGAACACCCAAAG--GCAT---ACCTTTCCTTTCTCCTTGGCATAGGCCTTGCAGCACTGAAGAAAGACCA-GGTTTG-CAACGGAGCCTTCAATACTCTTCATCCCTATGGATCTCAGGGGCTCATAGGGTGACAGGAGAGGAGACAAGCTAGCTTGGGAAGAGTCTTTGTCCTTCAGCTTCTCCTC-TACTGAAACACTATATACTTGGGGCCACAGTTCATAACAAAACACACATGCTGTCTTTCTTTCTCTCACACCCCCATCTCGGGAACCCAACAACTTGATGGCAGGTAGCTCTGGGTATCCTTGGTCTGGCATTCACCCACTGGGCATCTAAGCTGTCCTAAAGCTCTTTTCAATCAC-TTCTCACTGTTTCCAGGCCCATGTGGGTAGGTGTTCCAGCCTTCACTCTTTCAGGCTGTTCATAAAGGCACAGTGTGGGAAAATCCCCTACTGTGATGGCCATTGCTGGGAAGCAGGGAAGGTTAAGGGCCCACTGCTGCCCAAGGCTAGTGTAGACACCCTCTGCTCCTCCACTCATCTCCTCAAATAATGATATCAGGTGCAGCAGCTGC-TGTCTGGAATGTTATCAAACCAGGACTGCACAGGCACTGCATTCTCTGTGTGGAAGATGTAAGAAGCAGGCGAGTTGTCCAGGATGA--GTTTTCCTCAGGTCCCTCCCCAGATGGCTGACGTCCTTGACATAGCAGCCCTGGTGAAACAAACATGACTCATGGGACAGGCAGCCCCAGACCATCCCATACCCGTCCAGCTCACCCGTCACAGGATCTGCCTACTTGTTCAGGCTGGGAAGAAGAGAGCAATGACGAAAACACATTTAAACATTTCCTCCATTCATGTCAGGAACTCATCC-ATATAAGGCCTCATGAGCACATGGATCTGGTGCATGGTCCCCTCAAGCTCTACAGGCACTAGGCAGTCAGCATTGCTGATTGGCTTAAAGGAGCTATGCACAAGGGTTTCATCCAGGTCAGTGACCATACAGATCCTTCCTTGATTTTTCTCTGTCACCTCTGGGAGCAGGCAGGTTCCTGGGATCTGATAAAACTGATATTGGAGACGCTGGAGCTGATCCGACATAGCAATGGTGTTGACTCCCTCCTTATGTGTGGATTGCTCAGCGGGGGAACTTGACTGTCCAACATGCTGGGTGCAAGAACAGCAGAAAGGGGACTTTTAAGATGTGGCAAACATGAGGCCTCTTCGGAGAGGACTTTGGAAACCAGGCCTTGTTTGGTAAGGACCAGGGCATCTTCCCTCCATGCCTGGGTGATGATGGAGCCTTGTTCCATCTAACAATCCT-----------------------------------GAGGGCTGGGCTGGGGGGCATGGGCTGGGGCCT-----GATTCAGTTCCCGAGATTCTGACCTCCACAGCTGTTCACATACCCCTTCTCCTTTCCATACTGGCCGGGAAGGGAGGTGGCTTGTAGGGAGGGTGGTTGGCCTTGGCAGCGGCTCCCCAGTGTGCCCCCATCCCCGATTCCCCCAGCGAGAGCTTCAAGATCCTCAGTTT s mm3.chr10 114834 1796 - 130738012 TTTAGAAAGAGATTTTTAA----GAGTTAAAAGAACAGAAATCAGCTATATGTCCTCCTCCAGGGCAGAGAGAAGACCTCCTTTCCCATGGGAGTAGGACTATGGCTTGGGAGTGAGAGGCTGGCCTGGCACTGGAGCCCGGGTACAGAGAAGTGCCCATGGCAGGCATTCTTGCTGGAGCCAGGTG----TAGCCCATAGGACACAGAACCTGGTGG-----------GTCTGCGAACATGCTCTCATATTCCCAAACATGTC----------TGCAGCTGCTGGCTAGGTTTCTGTGTTTTCTGAAAGATGTGTGTCTGGG-CATCCAAAGCAGCCTCCGGCCTCTCCCTTCTCCTTGGCACAGGTCTTG--ATGCTGAGGGAAAGCCATGGTTTGGCGAGGGAGCCTACAATAGTTTTCATGGCTGTAAAGCTCAGTAGCTCACAGCATAGCAGGAAAGAAGACAAA-TGACTTGGGTTGAGTCCTTATCTTTCAGCTTCTCCCCCTACTGCACAACTGGGCACCCAGGACCATAGTTTACCGGACGG-GCACATGCA--CGCACACACACCCACACAACCACCT-GGGAACTGAGCA--CGGGGTGCAGAGAGCTCTGGGT---CTTGGTCTGATTT---CCTGCTCTGCGTGTGACCTG--------CTTTTGTCCCACACGCCCTGGCTACTTGCAGACCC-TGTCAGTG-----------------------AGGCTGACCACAAAGGCACAGTGTAGCAGAGTCCCCTGTTGGGATGGCCGTTTCTTGGA-GCAGGAAGGCTAAGGGGCCCGCAGCTGCCCAAGGCTGGTGTAGACATCATCAGTTCC---ACTTAGCTCCTCGAAGACTGGAATCAGGTTCAGCAACTCTGTATCTGCCATGTCATCAAACCAGGACTGCACAGGCACTGCATTTTCTGGGTGGAAGATGTAAGATGCAGGGGAGTTGTCCAGGATGACAGTTTTCCTCAGGTCCCTTCCCAGGCGGCTGAGGTCCTTGACATAGCAGCCCTGGTGGAACACACAAGCCTCTCGGAACAGGCGGGCCCGGAACACCCCGCACCGGTCCAGGAGATCAGTCACAGGGTCAGCATACTTGGCCAAGCTGG-----------CAGTGAAGAGAACACATTCGAAGAGCTCCCCCATCCGTCTCAGGAACTCATCCGACGTAAGGCCTCTTGAGCACATACACCTGGTGCGTGGTCCCCTCAATCTCTACAGGCACTATGAAGTCAGCATTGTTGATCGGCTTAAAGGAACTGTGCACAAGGGTCTCATCCAGGTCAATGACCACGCAGATCCTGCCTTGATCTTGCTCTGTCACCTCGGGGAGCAGGCAGGTCCCAGGGATCTGATAAAACTGGTACTGGAGACACTGGAGCAGATCGGACTTGGCGATGGTGTTGGCCTCCTCCTTGTGTGTGA---GCTCAGTGGAAGAGCTGGACTGGACAACATGCTGTGTGTGGAAACAGCA-CAAGAGGGCCTTGAAGATGCTGCGGCCACGGGGCTTCTTAGGCGAGGAC-TTGGAGACTAGGCCTTGCTTGGTGAGCACCAGGGCGTCTTCCCTCCGCGCCTGGGTGATGATGGAGCCGTGTTCCATCTAACAATCCCGCGGGCCcgggctggctgggcgggaagacgcgcgggcgggctgggctggggggcctgggcgggGGCCCGTCGGGCTCCGGCTCCCGAGACTCCGACTCCCGCAGCTGTTCACATCCCCCTCGCGTTTCCTCCCCGGGCCGGGAAGGGAGGCGGCCTGCACAGAGGGCGGGCGGGCCAGGCGGCGGCTTCCCCG-GTGCCCCCAGCCCCGA-TCCCCCGGTGGCAGCTCCGGGCTCCTCAGTTT a score=1665.000000 s hg15.chr15_random 143899 30 + 366089 GGGTCTAACATAGAGAATCC--ACCAGAAACA s mm3.chr10 3745319 32 - 130738012 GGGTCCAACATGGAGAATCCGGAGCGAAAACA a score=587.000000 s hg15.chr15_random 154011 62 + 366089 ttgttttttgttgcttttattgttgttgTTGTTATTGTCCTT--TTCTTCTTCTCTCTTGAGGA s mm3.chr17 74011512 64 + 93529596 ttctttcttccttccttccttcctttctttctttctttctttctttcttccttcctttctttac a score=19068.000000 s hg15.chr15_random 154073 273 + 366089 AGTTTTTGATATAATATATATTTTGTCTACCATGACAGTATTTGATTTTGCATTTAATTTTTTTTATTCTTT--------CATGTAT------------GGCTTATGCgtgttccagatcat-----aatgt-------ggtcatttgtaggaagcagagagttgaatctt--gtttcatgaatttatttagtgaaagtatgtttttgattgacataatttatatatataaaaaatcattactaaaagggaatgatttccta---tgactttctatttaattttgtttcttttttgt-tttaggtcctgta s mm3.chr17 74011576 287 + 93529596 agtttttgacttgacatctcctttatttgatataaaattagcta-------atgtagctacctctgctctcttcacttaccatgcatatggactt----cccctttac---tttcagagtgtgtg--aagctggcaca-agacccttgtaaatgatacatagtgagctctttggtttt---tattcatgtggccactttatgtctt---ttgacttaatccatttacttaacaagtaactattgataggcaagaactttatagtgtaacttt-tagttgctttctatTCTTTTGTGTATATGCGACATATG s rn2.chr6 137954505 285 - 146362310 agtttatgacttggcgtctcctttatttgatacaaa----------------tgtagctacctctgttctcttcacttagcatggaattgcccttagcacgcctttgc---tttcagagtatgtgtaaagctgacacacgggaccctgtaaatgatacatagttggatctttggattt---tcttcatgtagtcactttatgtttt---ttgatttaatccatttacttagcaagtaactattgataggtaaggattttatattgcaacttt-tagttgctttctgttcttttgtgtatATGTGACATATG a score=21516.000000 s hg15.chr15_random 155028 234 + 366089 AAGTACTATA-----------------GGTATTTTCTTTGTTGTTACTA--TAGATATTACCAAAAATAACTACTA----TAGCA---TAT---------AAAACCCTGCCTCTTTATGGCTGCCTATGTGTTTTATTGATGTCGCGAATTACATCATTTTGTATTGTGAATCTATTGGCACAGTTATATAGTCATTTTTAA-------GTCTTTGTTATCTCAACTACATAGCAGAATTAAAAGTATTCTGTGCATCTTCATTATAATAACAAAA s mm3.chr17 74012258 263 + 93529596 CAACCTTTTACCTATTGTTTGTTTTACGGGCCTTGCTTTGTAGTTTCCACCCAAAGATTACATAAAACATCTGATATTTTTAGCAATGTATTTTAAGCTGAGAACAACAACTTTTTGTTGTTG----------TTACTGATGTCACAATTTACATCATTCTGTATTGTGTATCTATTAACAAGTTAACATATCTACAGCTAA---TAATATATTTTGCGGTCCATTTGCACACAATAGTTAAAAGTGGCCGGGCCATCACCATTATGGTATTAGAA s rn2.chr6 137955186 263 - 146362310 TAACCTTTTACCTCTTGTTTGGTTTATGGGCTTTCCTTTGTAGTTACCACCTGAGGCTTACAGAAAACATCAGATATTATTAGCGATCTATTTTAAGTTGAAAACAATAATGTTT--TTGTTG----------TTACTGATGTCACAACTTACATCATTCTGTATTGTGTGTTTATCAACAAATCAATGTATCTACAGCTAATATTAATATATTTCACATTCTATTTTCACA-AATAGTTAAAAGTGGCTAGGCCATTATCATTATGGTATTAGAA a score=8574.000000 s hg15.chr15_random 174507 67 + 366089 CAC-TAGGTTGGGTTTCTTTGTCCTTTGAAATATTTTCTCTCCCTTCACCAATCTGAGAACATTTTTT s mm3.chrX 79169396 67 + 149996094 CAT-AAGGTACATTTTCTTTTTTCTTTGGCATAGTTTATAGAACTTTATCAACACTGAAACATTTTTT s rn2.chr6 67380363 68 + 146362310 CATCAAGGTACAGTTCCTTTTTTCTTTGGTATAATTTCTAGAACTTTATCAACACTGAAACATATTTT a score=30099.000000 s hg15.chr15_random 178292 280 + 366089 ACTCTCCTCCAAGGAGG-AAAAGGCCAGGAGGTCCTGTTAGAGGATGCACTCTGAGAG--------CCCGGGCTCCCTAAGGTATGAGAGTTCTAACCAGCAGGTGTAGACTTTTCAGGAGTGAGGAATGAGGCAGGCATTCCAAA--CCTGGAGCTTCATCACCTTTTGTTTCATCTC---AAGACAATTCTGAGGGGCTGTTTTGGAGCGTGTCTGGAAGGTGAACGTTGAAGAAGAGTGTGGGCTTTGATGTGACTCAGATGAGATCTTTCATGGGGAGGCAGGAATTCAA s mm3.chrX 79169928 289 + 149996094 ACTCTCCTCAAAGGAGGGAGGAGGTTGCAATGTTACTTACGAGGG---ACCCAGGAAGACGGTCCCCCAGACCTCTTCAGGAAGAGCGAAATCTTACCAGGAGTTATTTTCTTCTTAGAAATATAGTACGAGGAAGT--TTCCAAGATCTTGGAGCTCCAGCAGTCATTTTTCAGTCTAGTGAAGACCATTCGGAGGGGTTGCACTGGAACGTGGCTAGCCAGTGGATGATGGAACTCAGTGTAAGGCTGAGTGAAATTCAGGAGAGCTGTGTTGTGTGGAGGCTGCTGTTCAA s rn2.chr6 67380909 285 + 146362310 ATTCTCTTCAGAGAAGG----AGCCTGGAATGCTACTTACGAGGG---ACCCAGAAAGACAGACCTCCAGAGTGCTTCAGGGAGAGTGAAATCTTAAGAGGAGATATTTTCTTCTCAGTAATCTGGAATGAGGAAGT--TTCCAAGATCTTGGAGCTCCAGTAGTCGTTTCTCAATCTAGTGAAGACCATTCGGAGGGGCTGCACTGGAACGTGGCTGCTCAGTGAATGATGAGACTCGGCATGAGGCTGGGTGAAATTCAGGCGAGCTCTGTTGTGTGGAGGCTGTTGTTCAA a score=8439.000000 s hg15.chr15_random 178572 99 + 366089 TGCCCAGAATCTGGGCTGGTGTCTTTGAGGTCA-GTAGGTTGCCTCTTTGTATCCAAGTCCATTGTTACTAAA-------T----------TGGAGGCTGGAGATTCTAAATGGCTT s mm3.chr12 113414525 104 + 114462600 TGCTGGAAGCCTGAGCTAGAGTCTTTCTGGTCATTTGGGATGACTGCTTTGGTCAAAGACTACTGGTACTGTAAGACATCT----------GAAAGCCTTCAAACTCCA---GGGTt s rn2.chr6 140665365 114 + 146362310 TGTTGGGAGCCTGAGATAGAATATTCCTGGTCATTTGGGATGACTGTTTTGGTCAAAGACTACTGGTAGTGTAAGACATCTCTACAGTCTAGAGAGCCTTCAAATTGTA---GGGTt a score=11512.000000 s hg15.chr15_random 178671 116 + 366089 CCAGACCATCTCTC----TGATTCTCTTTGGGAGATTGGGTCTGAAAAAGACAATGTCAGTATTTTTGGGAAA-TTCTA-GAAAGTCTGCTTGGAAACCTGGGAAGACCTCTTGCCTAGTGC s mm3.chr12 113415498 117 + 114462600 TCAAACCATGCCTTCCAATGTTTCCCTCAGAGATTTTGAAT-----GAGGTCAGTTTCTGTTTCTTTGAAGCATTTCTGCCAACACCGTATGGGGAACCTAGAAATGTGTCTTGTTTAGTGC s rn2.chr6 140666362 116 + 146362310 TCAAACTATGCCTTCTAATGTTTCCCTCAGGGATTTTGAAT-----AAGCTCAGTTTCTGTTTCTTTGGGTCA-TTCTGTGAACAGCTTGTGGGGAAGCTAGAAATGTGTCTTATCTAGTGC a score=14951.000000 s hg15.chr15_random 233239 342 + 366089 AGCCCAAGTTCTGGGAGCCCTTTGACCTCGGAGAGCCTGAGCAGTCCAATGGGGGCTTCCCCTGCACCACAGTCCCCAAGATTGCAG----------------------------------------------------------------------------------CTTCATCCCCTTTCCGATCTTCCGACAAGTCCATCTGGACTCCTAGCAGGAGCATGC-----------------------------------------------------------------------------------------------------------CGCCCCTAGACCAGCCAAGCTGCAAGGTGCTGTATGACTTCCAGCCTGAGAACCATGGGGAGCTGGGCTTCCATGAGGGTGACGTCTTCACGCTGATCAACCAGATCAACGAGAACTGGTACCAGGGCATGCTGGACAGCCAGTTGGGCTTCTTCCTGCTCAGCTACATGGACGTGCTCATGCCTCTGCC-CAGTGACT s mm3.chr17 39185596 532 - 93529596 AGCCCCGGCCCCGGGAGCCCTTTGAGCTTGGAGAGCTGGAGCAGCCCAATGGGGGATTCCCCTGTGCCCCAGCACCTAAGATCACAGGTAGCAAACCCCCCTGGAAGGTGCCAGGGATGGAGCGAGGCCTGTTCACCCCACTCACACCTGCCCTCCTCTCTATTAACAGCCTCCTCATCATTTAGATCGTCAGACAAGCCCATCAGGATGCCCAGCAAGAGCATGCGTGAGTGTCTGGGGTGGAAGTTGGGTGAGAGGGACTACTATAACCCCCACTCCCACCCTGGCCACTAGCCTGTCTGCAGTGCACTGACAATGCTCCCCTGTTCCCAGCACCCCTGGACCAGCCAAGCTGCAAGGCGCTTTATGATTTTGAGCCAGAGAATGATGGCGAGCTGGGCTTCCGTGAGGGGGACCTCATCACGCTTACCAACCAGATCGACGAGAACTGGTATGAGGGGATGCTGCACGGCCAATCAGGCTTCTTCCCACTCAGCTACGTGCAGGTGCTGGTGCCTCTGCCTCAGTGACT a score=5490.000000 s hg15.chr15_random 233581 74 + 366089 CACTGGTGCCCCCGCCCCGCCCCTCCATCCACACTGGGTGGCACCCCCGC--CAGGTCT---CCTGCCTTCCATGGGCT s mm3.chr2 6904594 74 - 181423755 TACTG--GCCCCCACTCACCCTCCAGGTCCTGCCAACTTGTCACTCATGCTACAGATCTGTCCCTGCCCT---TGGGCT s rn2.chr3 27911485 70 - 165924081 TAGTG--GCCCCCACTCGCCCTCCAGAGCCTGCCAACTTGTCACTCATGCGACAGATCTGTCCTTGCCT-------GCT a score=4856.000000 s hg15.chr15_random 233880 336 + 366089 AACACTAAGGTGCTCTCAGAAACACTAATGTTCCTCCAGGGCAGCCCCCACCTCCGTCCTGACCCCATGGGGGCCC---AGCCC----------ACAGCCTACCCTCGAGTTCCACGGCCTTAACAGGCTTGGATCGAGTGTCCCTGTGGGGTGGCTCAGAGACAGGACCCTGGTTTTAAATCCCTCCACAAGCCTGCTCCTGGCGATGAACCC-TAGCCCCACTCCAGGGCCACAGTACCCCAGCCTCACACATGCACTCCTTCTCCCCAAGGCCAGGGCAGAGGGCCTCACTGTTTCCCTGGCCTGCT-GTCAGCTTTGCACCAGGAGACAGAGGCAGCTGGGATCTGC s mm3.chr17 39186169 292 - 93529596 AATGCCAAGGTGCTCT-AGAAACACTAATGTTCCTCCAGGGGGGACTCCTCCCCACTCCCTCAGCCCTGGGGCCCCCCTATCCTAAGACTCGGAAAGGCCCACCCTGAGGTTCTATTGCCT--------------------TCCTGGTGGTAT----------CAGCTTCCAGCTGTTTCAACCCTTC-CCAGCCCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCAG-------GCTCTCTAGAGGCAGGCAGGTCCTTGGAATCCCCAGCCTGCAAGCAGAGG--------------CTGGCCAGCTCCCCAGCTCAGCAC------ACAGAGACACCTGGCACCTGC a score=116739.000000 s hg15.chr15_random 236220 1084 + 366089 ATTTTCTGCAACT-AATAAGTTATTTAGAATAACATGCTATTTTTAAAGCAACACATGTGGAAGGCTTGGTGAAGCAATGAGAGACAGACTTGAGTTACAGCTCGCTTTCTTTTTCCAT------ATTCAGGTTCTTTAAATAGCTCTCTCCCAGCCCCCAAAGCTTCCTCTTTTGTGACCTTTCCCTGTGGGGCTGCGGGAAAGC--AATTCTCCAGAGCAAGGAAAAATGATGCTAAGAGCCAC---------------AGGCCGGGCTGGAAAGGCCAGTGCAAGCCGGAGGGTCCCCAGGGATGGAAGAAAGCTGCGTCTCT-CTGCCGGCTGGGctcctctgccgcatcctcctccgcccctccctcctccttccaccctcctccctcccatctaccttctGGTGCCCAAGGAACCAGTGGGTGGGGGGCGCTGGGAAGGGGCGCAGGTCCCGCAGCAGCCGCTGCCTCCGCAGGTACAGCTTAATGGCCTGCAGCAGCCCCAGGGCCAGGCAGAACACGAACGCCAGGTAAAAGGGCCGCGCCCAGCGCGTCTCCAGCCAGGAGAATTCCATGGCTCTGCGCAGCGCCGAACGCCGGCGGTT------TCCTGGGGCGCGGGAGAGGGTGG--------------------GCTTTCTCCCGCCCGGAGCTGGCGTAGGGTCGCCCACCCCACCGCCTCTCTGGGCCCTCGCGAAGCTTCTGACTCGCGGGAAGAAGGAAAGGCAGTGGGAGGGGCAGCTCAGGCCTGGGGAGAGGAGGCAGGCGCGCGTGCGGGATTTCTAGCCG--GTTACCAAAGCGCG----CACGCTTCG-TTCGGC----CCAACTGCTTTTGCGCTCCTGGAGCGTCCTCTTTTAAGTCCAACAGTTTTCAGTCACGG--GATCTGAATTTATATTGTAAAATAATGCTAAAGCTGAGGTCATTGTTTTTCTTCCTTATCAC----------------------AAATTAT---AAATGGCTATGCAAGA-GATTTTCTTTTCCATTCTGGCATTCTACCAAAATTCCCAGGTGGTAGAGGTAGG----GGGAGGTGTACCATCATTATTCCTTTATCCTGTGGCCTGCCTAGTGGTGTTCCGGTAAATGGTTTACAACTGATTCCCACCCTGATTCCCAGCGTG s mm3.chr4 113133097 1038 + 152921959 ATTTTCTACAACT--AAGTATGAGTTAGAGCAACACACTGAGTGTTAAACAATACACGCAGAAGACATACCAAGGCGACTGGAGACTGAGCTG----ACACCTAGTGCTCTTTTACAAT------ATTCACGTTTCCCAAATAACCTCCCT-------------------GTCTAGTAACCCTTCCGCGGGGGAATGCGAGAGTTCCTAGTATTGCAGAGGA------------GCTGAGAGCCACCCTACCCTCCCCCATCCCCCAGGCTGGAAGTCCTAGAATAGCTC--AAAACTGCATGGGAGGGATGGAAGCAGAGGCTAGGCTATTGGCT----TCCTCGGCAGCATCCTGCTGCGCCCCTCCCT----------------------CCATCTACCTTCTGGTGTCCCAGGAGCCAGTGGGCGGGAGGCCCCGGGAAGGGGCTCAGGTCGCGCAGCAGTCGCTGTCTCCGCAGGTAGAGCTTCATGGCCTGCATCAGCACCAGCGCCAGGCAGAACACCAAAGCCAGGTGCAAGGGCCGCGCCCAACGAGTCTCCAGCCAGGAGGCCTCCATCACTCTGAGC----TCGCTTTTCGGCGGGCAG----TGGGTGGGTGGAGGATATGGTAG-TGGTGGTGGGAAGCTCTTAGCTTTCTCCAGCCCGGAGCTGGCGT-GAACCACCCAGCCC-CCTCCCCAGTGAGCCCTGGTGTAACT-------------GAGGTGG---------GGGAGGGGCAGCTCCTGCCTGGGAAGAAGATGCTGGT---CCTTCGGGATTTCCAGTCTGCGCTATCCATTCGCTGGTGCACGCTTGGATTCAGGCAGACAGACTTCG------TTCGCGGAGTGTCTTATTTTAAGTTTGACAGTTTCCAATCGCGGAAGATCTGAATTTAGACTTTGAAATAATGCTCAGGCTGATGTAATTATTTCTCTTCCTTGTCAC----------------------GAACGAAAATAAACTGCTATGCGAAATGACCTGCTTTCCCACTCTGGAAATCTATGAGCAGCCACAGGAACTAG--GTGGGAGCCGAGGAGGGCATGGCCACCATACATGTGCAGTGTGGCCTGCCAAACTGTGCAT--GTGAAT-GTTTTCCCTTGTTCTTCATCCCGATTTCTAGAGTG s rn2.chr5 151207676 1027 + 191625135 ATTTTCTACAGTTTAAAGGATGAATTAGAACAA---ACTGAGTTTTAAACAATGCACGTAAAAGACATAACAAGGTGACTGGAGACTGAATAG----GC--CTAGAGTTCTTTTACGATGATGATATTCAGGCTTCCCAAATAcccccccc----cccccg------cccgcccAGCAACCCTTTC-CTAGGGGATGCGAGAGTCCCTAGTACTGCAGAGGA------------GCTGAGAGCCACCCCACCCTCCCCCA-ATCCCGGGCTGGGAGTCCTA-----------------------------CGGAAGCAGCGGCTGTGCTACGGGCT----TCCTTTGCAGCATCCTGCGGCGCCCCTCCCT----------------------CCATCTACCTTCTGGTGTCCCAGGAGCCAGTGGGCGGTAGGACCCGGGAAGGGGCGTAGGTCGCGCAGCAGCCTCTGTCTTCTCAGGTAGAGCTTCACGGCCTGCATCAGCACCAGCGCCAGGCAGAACACCAAAGCCAGGTGTAAGGGCCGCGCCCAGCGATTCTCCAGCCAGGAGGCCTCCATCACTCTGAGC----TCGTTATCCTGCGGGCAGTGGATGGGTGGGTGAAGGATATGGTGGTTGGTGGTGGGAAGCCGATAGCTTTCTCTAGCCTGGAGCTGATAT-GAATCGCCCAACCC-CCTCCCCA------------GTAGCT-------------GAGGGGG---------AGGAGGGGCAGCTCCTGCCTGGGAAGAAGATGATGAT---CCTTCGGGATTTCCAATCCGCGCTATCCATT--------CACGCTTGAATTCAGG----CAGACTTCTTGTACCTTCCCGGGGTGTCTTATTTTAAGTCTGACAGTTTCCAATCTCGGAAGATCTGAATTTAGACTTTGAAATAATGCTCAGGCTGAGGTAATTATTTCTTTTGCTTGTCATGGgaaaaaaagaaagaaagaaagaaagaaaa-aaaCCGCTGTGCGAAATGACCTGCTTTCCCATTCTGGAAATCTATGAGCAGCCACAGGAACTAGGTGTGGGAGCCGAGGAGGGTATGGCAATTATCAATGTGCAGTATGGCCTGCCAAACTGTGC------GAAT-TTTTGCCCTTGTTCCTCATCCCGATTTCTAGTGTG a score=205257.000000 s hg15.chr15_random 239070 1413 + 366089 ------------------------------------------------------------------------------------CCGAATGTGTCCTTTGCTGGCTCTCCCCGAGCAGGTCAGTCCGGGACGGCCAG------------CTTCCCCAGGCTCGGGGAACGCCCGGGCCTCCCGCCCTCCCTGGGAAGCCGATCACATGTCGGGGGAGTCCGGGCTGCCAGGCGGTGCCCCACCCAGCTGATGCAACCCGCCGGAACCCGAGCTCCCGAGGCGGGGCTAAGCCTCCCACCCCCATTGGTGCACCCGCTTGCCACTTAGGGCTGGCACCGCCTTTCCCTCCGGATCCGTGACAACGGGTGGTGACGTAACGGACGTGACGCAATGGTGACGGGA-GGGGCGGGTGTGGCCCGAGGAGGCCCAGGAGCCATTAGTAAATGCGCCA-CTGAGACGCCGGGCCCGCCCAAGGGCTGACCTACCGCCTGCTCCTTCCGGTCGCGCTCAGGGTCCGACCCCGGGGCCCAGGCCTTGATCCCGCTGCCCTGCGACCCTGGTCAAGTTTCCCCTGCCCGAGCTTACGAAGGCCCGGAGCGCTTGGCAACTTCCCGGAACACGTCTCCGGGCCCGGAAGGCCCCGCTGCCCCACCC-GGGCCCGCG--ACCTTTCCCATAGCTTACCGAAAGAGTGGAGGTTCTGGATAGCGGACATACGATACGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGCGGCGGCGGCGGTGGCGGGAGAAGGCGGGCAGGGGGGAACGGAACGTCGGGAAGCGAGGGGGCTCAAGGGGGAGGCTGCTGAATCCTCGGCGGCGGCTCAGTGACTGGGGCAGAGGGGCGGTGCCTGTGTTTAGTTATATAGCCGCGCCTCTGACGCCAGCGCGCTGCCCTCACGTCCTGACCCCACCCACAGCGTCGTGC-CCCAAGCGCCCAGGCGGCGCCGCTTCCAATTGGTT-TGGAGGCGGGGACATGGGATGGCGCTTGCGCAGGAAGTCTGCGGCAGG--AGGGCGTCCTCTTGACTCTAGGAGAGCTGGGA-GGGGGAGGGAAAGCTTGATCTGTCTCGGAGCCTGCGCAGTGCGAGTGGACGGTGTCTGGGT-GCCGAGAATACCGGCCCAGGTTTCGAGCGCGCCTACGCACTGTGTCCTTTGGTACGTTCCACCTTCTTGACCCTGTTGCATCCCTGTCTT---CTCGAAAAGGGGAGTTTCATATGGTAA------ATGAACACTCCTTAGAGAGGATTTAGATGATGAGCCTCCCAAACACGAGAAATCCCCGTTGTGTCAAACCCACCTACCTACCCACCCTACTACCCACGGAGTCACAGCGGGATTTAGGGCGGCACTTTGATTAATCAACATACAATAATATAATCAAAACGGTAACCGCATAATTTAGATTGCCATTTAGATT----TATTCTAAAGTGGGTTAATCCGATCTAAAATTTTC-ATTTAGATTAGATTAATCCATCTAAGGAAAAA s mm3.chr11 21699859 1270 - 122862689 ------------------------------------------------------------------------------------CCGGAGGTGTCCTTTGTTGTCCCTCCGGGAACTGGCCAGTACTAGA--GCTAG------------CTTTCT---GCTCTAGG-------------CCAGCCCTCCCGCCAAGGCTGATCACGTGCTGGAGA-GACCTAGTGGGCAGGCAGCGCCCCACCCGGCTGATGCAACCTACCGGAAGCCAGGCTCCCGAGGCGGG-----------------------------------------------------GCCTTCCCTCCCAGCTCCGAGACAAC-GACGGTGACGTAGAGGACATGACGCAGGGGTGGCGGGAGGGGGCGGGTGTGGCTCGCCGAGAGGCAGGAGCCATTAGTAAATGCGCCACCCGAGACGCCGGGCCCGCCCAAGGGCTCACCTCCCACCCGTTTCTTCCGGGCACCCTCAGAGGTCGACCCT-GGGCGCAGATCTCGGTTCCACGGGC--ATCACC--------ACCCCTCCAGCCCGAGCTAAGATGGGCTCGCCGCGCTCGGCGGCTCTCCGAG------CTCCGACCCCG-------CCAC--CCCCCCCCCAGGCCCGCGCGACCTTCCCCA-GGCTCACCGAAAGAGTGGAGGTTCTGGATAGCGGACATACGATACGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGCGGC---------TGCGGGAGAAGGCGGGC-GGGGGGGACGGAGCGTCGGGAAGCGAGGGGGCTCGAGGGGGAGGCAGCTGAGTCCTCGGCGGCGGCTCAGTGACTGGGGCGGAGGGGCGGCGCCTGTATTCACTTATATAGCCGCCCCTGTGACGCCAGCGCGCTGCCCTCACGTCTCGGCCCCACCCATGGAGTCAAGCTCCCGGACGCCCGAGCGCTGCGGCTTCCTATTGGTC-GGGGGGCGGAGTCAAGGCTTGACGCGTGCGCACTGGGTTTG-GCCTGGAAAGGATGTTCTGTTGACTCAGGGAGGGGCGAGAGGGGGGAGGGAAAGCTTGGTCCGCCTGCGCGCTTGCGCAGTGGGCATGGTAGTTGTCTGAGCGGCCGCGAAAACTGGCGGAGGTTTCGAGCGCGCCTGCG--------CCTACCGCACGTTCTACCATCTTGACCCTGTTGGGGTCCTGGCACTAGCTCTGAGATGGG----TCTTAGGGTGAGGATCGATTTG----CTTTAAAGGGTAATTACGTGCGGGTCCTCCAAAATTCGACTGATCC------------AGCCACCCATCAACCTACCCTTCTCTGCACGTATTCACA----GATATAG---------CCATTTAATCAGCATAAAATAACGTGATCAAAATTTGGACCTTATA---TAGGGTATCATTTGGATTAGCATGTTTTAAAATTGGT------AACCAAAAATTATT-AT-----TTAGATTAATTCTTCTAAGGAAGGA s rn2.chr10 21362600 1364 - 106208427 TTTTGTTACGGGTCGTTGTGGGCCATTTGTTGATTCCCCTTTCCTGATTTTTTTTTTTGTCTGTGCAGATATCGTCACTAAAATCCGGAGGTGCTCTTTGTTGTCCCTCCGGGAACAGGCCAGTACTAGA--GCTAGACAGAGCACGGGCTTTCT---GCTCTAGG-------------CCCGCCCTCCCTCCACAGCTGATCACGTGCCGGAGA---CCTAGTGGGCAGGCAGCGCCCCACCCGGCTGATGCAACCGACCGGAAGCCGAACTCTCAAGGCGGG-----------------------------------------------------GCCTTCCCACCCTGCTCCGTGACAAC-GACGGTGACGTAGAGGACGTGACGCAGGGGTGGCGGGAGGGGGCGGGTGTGGCTCTCCCAGAGACAGGAGCCATTAGTAAATGCGCCACCCGAGACGCCGGGCCCGCCCAAGGGCTCACCTCCCACCCGTTTCTTCCGGGCACTCTTGGAGGTCGACCCT-GGGCACAGGTCTCGGTCCCACGGGC--ACCACC--------GCTCCTCCAGCCCAAGCTAACAAAGGCTCGCAGCGCTCAGCGGCTCCCCTAG------CTCCGCCCCCG-------CCAC--CCCCACTC-GGGCCCGCG--ACCTTCCCCA-GGCTTACCGAAAGAGTGGAGGTTCTGGATAGCGGACATACGATACGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGCGGC---------TGCGGGAGAAGGCGGGC-GGGGGGGACGGAGCGTCGGGAAGCGAGGGGGCTCGAGGGGGAGGCAGCTGAGTCCTCGGCGGCGGCTCAGTGACTGGGGCGGAGGGGCGGCGCCTGTATTCACTTATATAGCCGCCCCTGTGACGCCAGCGCGCTGCCCTCACGTCTCGGCCCCACCCATGGCGTCAAGCTCCCCGGCGTCCGTACACTGAGGCTTCCTATTGGTCGGGGGGGCGGAGTCAAGGATCGACGCGTGCGCACTGGGTTTG-GCCTGGAAAGGGCGTTCTGTTGATTCAGGGAGGGGTGAGA-GGGGGAGGGAAAGCTTGGTCCGCCTGCGCGCTTGCGCAGTGTGGATGGTAGTTGTCCCGGCGGCCGCG-AAACTGGCGGAGGTTTCGAGCGCGCCTGCG--------CCTATCGCACGTTCTACCATCTTGACCCAATCGGGGTGCTGGTACTAGCTGTAAGATGGG----TC-TAGGGTGAGGCTCGATTTACTTTCTTTAAGGGGTAATTAAGTGCCGGTCTTCCCAAATTCGACAGATCC------------AGCCACCCATCAACCCACCCTTCTCTGCACTCATTCACA----GATTTAG---------CTATTTAATCAGCATAAAATAAGGTGATCAAAATCGGAACCTTATA---TAGTGTATCATTTGGATTAGCATGTTTTAAAATTGGT------AACCAAAAGTTGTTAAT-----TTAGATTAATTCTTCTAAGGAAGGA a score=36470.000000 s hg15.chr15_random 240616 288 + 366089 AAGCAGGAGCAGAACACTATCCCAAGAAAGACCCTACGGAGGA--CCTCTGGAG-----------GCGCAGGGTGCAGCAGGAAGTTACACCCCGGCTTCCCCAGCTCAGGCACTTTTCTGTCTTGCCCCATCGCCTGCAC-GGAGAGCCTCTCAGATGAGGAACCGCACCTGTTAGGGGAGCGGGGACAGACAGGGGTCAGGGGCTCGGTGGACCTGCATCCCC-AGAAGCTCAAGC-CACT-CCGTGTCACCTGCCCACCACCCC-------------------------------CAGAAGGGGCCAGCAGGAATAGGCCT-------------------------------CCCCATCCCCAC s mm3.chr11 101213467 354 + 122862689 AAGCAGGAACAG-ACACCATCCC---AAAATCCCTATGGAGGAACTCTCTGGAGCACGGGAGCACGCGT---GTTCAGCAGGAAGTC-CAGGCCGGCCCCCGGGGCTCAGGTACTTTTCTGTCTCCTCCCACAGTCTGCTCTTGAGAGCTTTCCAGGTGAGAAACAGCGCCTGT--GGGACATGAGGAC--ACCGAGGTCAGGTGCTTGACAGGCCTGCCTCCCCCAGAAGTTCAGGGGTGCTATTGTGACATCTGTCTACGACCCCAGAAAAAAA-TGGCCTTTTTCCTCATTTGCTTAGAAGTAGCTGGAGGAGCATGGCCTAGCCAAGCAAGGGGCAAATATAATGGAGGACCCCCACCCCAAC s rn2.chr10 84899294 337 + 106208427 AAGCGGGAGCAG-ACACCATCCC---AAAATCCCTACGGAGGAACTCTCTGGAGC----------GCGT---GTGCAGCAGGAAGTC-CAGGCTGGCTCCCGGGGCTTAGGTACT-----GTCTCGTCCCACAGTCTGCTCTGGAGAGCTTTCCAGGTGAGAAACAGCTCCTGT--GGGGCATGTGGAC--ACAGAGGTCAGGGGCTTGACTGGCCTGTATCCCCTGGAAGTTCAGGG-TGCTATTGTGACCTCTGCCTATGACCCCAGAAAAAAACTGGCCTTTTTCCTTATTTGCTTAGAAGTAGCTGGAGGTGCACAGACTCACCAAGCAAGGGACTAATGTAAAGGAGGGACCTC--CCCACC a score=77408.000000 s hg15.chr15_random 240918 716 + 366089 GAAGGCAGGCCAGGGCACA------------------------------------CCGTGCTT------------GGG---GAAGCTCAGCAGCAAAGGATCCCCCC-----------AAAAAAGGAGCGCAGGTTT--------CAGCGGGGAGATGG---------------------------------------------------GAGGGCCTCCAACAGAAGGAGGTTCTAGAGAGGAGGAAAAGCCTGCAAAG---------AGGGGGCCGTACTGGG----GCCAGGCCGCCTAGGCCAGCATGTGGTCTGCAGTGGGGTACGGGGGCCTGAGGCCGTCGCTGTAGGTGTCGATGGGGTAGTCTCCATCCATGTCCATGTGCATCTCCAGCGGGTCAAGGGGCACATCGCTGGAGTACATGGGGCGGTAGGTGGCATCCATGTCTGGGGACAAAAAGTGGGGCTCGGTCCTAGGGTCTGCAAGCTACC--CTGCAGGGGAGCAGTCTGCACAGCCTTCAGCTGCCTCCTCTACCCATGCCCACCCCTGGTGGGCCTGAC-CCCTCCCCAGACCCC--ACACCAGGGCATCTAGACTGGGGTACATGTGGATGCCACACAGCAGTTGCCACTGGTCCTCTGGCCCCGGAGACATAATATTGTCCCCTCACACACACCCACACAGCCGCCCAGGATCTCCAGGGTCCTGAAGAGCCCGGCACACACTTACCATCTCCATAGGGCTCATTGATGGGAATCATGCTCTGGGCCTGAAAAAGGAGAGAGAAACATGGAGGGGAGGTTTGAAAATGCAGGCTCCGAGCTGGATCTCAGCTGGTGGGCAGGGAG s mm3.chr11 101214197 753 + 122862689 AAAGGCAGGCCAAAGCACAACAGATCAAAAAGCACAGGATTGCCACACTCCTTCCCCGTCCCCCAAAATGAGCCAGGGTTTATAGCCCAGGATGGAGAGGTCCCCACCAGACCAGAAAGAAAAGGAAGTGGCAGTGTAACCATAGCAACAGGCTGAGGGCAAGGCTGGgagggagagagagagagagagagagagagagagagagagagggcgagcaagcaagagagagaga---gagagagagagagagagagggagagggagTGGGGAAGGGGCCTTACTGAG----GTGGAGCTGGCTAGGCCAGCATGTGGTCTGCAGTGGGGTAGGGAGGCCTCAGGCCGTCACTGTAGGTGTCCATGGGGTAGTCTCCATCCAGGTCCATGTGCATGTCCAGAGGGTCCAGAGGCACATCGCTGGAGTACATGGGGCGGTAGGTGGCATCCATGTCTGGGGACGAGAAAGGAAGGCTTATTTGGAGATCTGCAGACCACACATGGTAGAAGAGCAG---------------------------------GCCCACGGCTAG-GGACCGAATTCCCTCCCTACACCCCC-ACAGCAGGG-ATCTAGACTGGAACACAC-TGGCTACCAGG----AGTTTCCACT---------------------------------------CTCGCCCACACAGCT-----------CCAGGCTCTGGGTTAGGGCTCCACACACTCACCGTCTGCATAGGGTTCGTTGATCGGGATCATACTCTGGGCCTGAGGAAGGACAAAAAGACATAGG----AAGTGTGGGAAAGGATCCTCTGGCCTGCTTTTCCACTAAGGAACATAGAG s rn2.chr10 84900011 655 + 106208427 AAAAGCAGGCCAAAAGGTAACAGACCAAAAAGCACAGGACTGCCACACTCCTTCCCCGCCCCC--AAATGAGCCAGGGTTTATAGCCCAGGACCGAGAGGTCCCCACCAGGCCAGAGAAAAAAGGAAGTGCCACTGTAACCACAGCTACAGGCAGAGGGCAAGGCCGG---------------------------------------------------CAAGACAGA-----------------------------------------AAGGGGCCTTACTGAGTGAGGTGGAGCCAGCTAGGCCAGCATGTGGTCTGCAGCGGGGTAGGGAGGTCTCAGGCCGTCGCTGTAGGTGTCCATGGGGTAGTCGCCATCCATGTCCATGTGCATATCCAGGGGGTCCAGAGGCACATCGCTGGAGTACATGGGGCGGTAGGTTGCATCCATGTCTGAGGATGAAAAAGGAAGGCTTATCCAGAGGTCTGCAGGCCACAT-CGGTAG------------------------------------------CCCAAGGCT----TACCTAACTCCCTCCGCGCACCCCCCACAGTGGGG-ATCTAGACCGGAACACAC-TGGCTACCCTG----AGTTTCCACT---------------------------------------CTCACCCACACAGCC-----------CCAGGCTCTGGGGTAGGGCTGCACACACTCACCATCTGCATAGGGTTCGTTGATCGGGATCATGCTCTGGGCCTGAGGAAGGACGAAAAGACATAGG---GAAACGTGGGAAAGTATCCTCTGGGCTGCTTTTCCACCAAGGAACAGAGAG a score=61068.000000 s hg15.chr15_random 242313 1167 + 366089 TGGAAAGCCCAGG----GAGAACTTTGGCTACAGTGACGAG-GGAAGTGGGGAGTGTGGCGAGAGGCAGGCGAGGGCCAGATGTT--CCCGTCTCTTCCCTGTACCAGCCAGTCGTCTGGCCCATGCCAGCCTCCCTCCTGAAATTGTCCAAAGAAGACGTGATCCGGGCGGGGCCCTCAGGATGCCCTTCAGGAAGCTTCTC-TTACCCAGGGCCTGGGGCCTTTGGTGCTCAGGAATGGGATGTGATGCTGGGCTTCAACAGGGAC-TT---AGGCCTCTCCATGTCTGTCATAAACACTTCCTAGTCCTCAGGTCACGCCCAG-GCTGCAGTCTTCCC--AGGGCTGTGCTCTCCCAGCACCCTCAGGAG--GGCAGACCTCAGGC--GGAGAAGCCTGCCGGTGCCTACTG----CCCAGAATGGGCTTCAAATCCACCTCTGCTGGGTTTCTGGGGGCAGGGACCGGTTCACAAGCCCCTCCAGGTTCCCCCGTCTG--------------GCCTTCCCTCCCCACAGGGCTGGCCCAGAGAGCGCCTCTCTGAAGACTGCCTCCTCCATCCT-GGCTG----CAGTGCTCCCAGAGCCGGGCCTC-------CTCAGGGCCAGGGTGTGCCCCAGGCAGGTCCCC-------AGGGGCTCTCAAGGGGTACTGCAGGGGGCTCTCCCCTAGGCAGAGAGGAGAATTTGGCCCCACAGCTAGCT-GCCAGCTGAGCCTTGGTCTCCTCTGTAGGGCCTGGAAGAACAGAAAGC--CTTCCAGGGACCACCATGTGGGACCCTAGACCCTAGAAGACTTCACCCCAG---GAGGCTCTGCCCATCCCAAGCATCCGTGGGTGACTGGGTCTCCACCTCTTGGCAAGCGCTGACTCACTCCCTACCTCTGAGAG--TCCATGACCCAGGGCTCCAGAGAGACTATCCTCCTGCCCACCTAACCAGGTGGCGAAATCTCTGGGGTCAGGTGGGGCCTTATCACCCTCCTTGGTCAAGGAGCCAGGTACCTGCACAGGCATGCAGACCTGTGTAGACCAGATGCCTGTGGGGTGGGTTGTGGACCCCAGCCCCATTCACCCATCCCTGCCCTGCTGAGAGAGTTTGTTCATCGGCTTTACAGACCTGTCTCTGTGGGCACCAGGGGCAGC-----------CCTGTCTCTCTCTCCCTGAC---CCTCCTGCTCCATCCCTGGGCAGCAGCGCTGTACTCCTGC s mm3.chr11 18648676 1021 - 122862689 TGGGAAGCTCAGTGCCAG-----CTTAGGCGGAG-ACGGAG-GGAAGTGGGCAGAGGGGTAAAGGGCAGCAGAGAGAGGGATGCTAGCCCGGCTCATCC-----CCTGGCTGCTGTTGTCCTGGGGACAACATTTCTCTGCAGGTCGTCTCCGGCATGTGCAATT----GGTGACACTCAGGAGACCCCTCTAGAAGCCCCTTGCTACTCTGAGCCT-GGTCCTTTGGTGCTCAGGGCATGAGGGTGACCTTGCACGTAAGGATAGTC-TTACAAGGGTTCT--GTGACTGCCTCATGCATCACCAGGACCTACAGTCATGAGCAAAGATGTAGCTCTCTG---GGGCTGTTCTCTCT-GGGGTCCTCAGGAAGGCGTGGTCCTTGG----AGAGGAGCAAGATG-----CACTG----TCCAGTGTGGAGTCTGTGTCTGCTT----------TCTGGAGAC-----------TATCAGTACCTGCTGGCTGTCTTTCCTAGACAGGAAGCGAGGGCCTT-GCTCCCTAGAGGCCA--CACAAAGAGCACC-ATCTGAGCAC-GTCTGCTCAGGCCCAGGCCTAGGCCAGTTCTCCCAGAGCCAACCTGTACTGTGTCTTGGGGAGA-GATGTGTCTGGT---GGTCCCCTGACTCTTGGGGAGATCGGAGAGGAATGCA---GGCCCTTTTCTGCCCACA-----------------ACAGCCAGTG-ACCCCCAGAGCCTTACTTCTTTC---------------------------TGTGGGGTCTCTGCCA---------------CCTA----ACAGCAGCCCAGTACAGGGATCTACTTTTT-------TCCATGAG---------------------------GTTGACCCATTTTCT-CCTTTGAGAGATTCCATTGGCCAGAATTTCAAAGGATTTATGCGCTTGCCCA---------GGGGTAAAATCTCCATGAGAGAGAAGAGTTC-----CCTTTCT--------------GGCACC-ACAGAGACCTGAAGATCTGTGTAGA-TGGCTGACTACACGGTGGCTCCTGGGCGCTGGCCCCAGCCGCCC--TCCTTACCTGCTGA-----CTTGTTT----------CCAAGCAACCTTTGGAGGTTGCTGAGGCAGCCTATTTCTG--ACTGTCTCCATCTCCCTGAC-TGCTGTCTGCACC----TTTGGCA-CAGCCCTGCAAATCTGC s rn2.chr10 18233140 1036 - 106208427 TAGAAAGCCCAGC-CCAGCAAATCTTGACTGAAG-AAGGGGAGGAAGTGGGCAGAGAGGTAAAGGGCTGCACAGAGAAGGATGCTAGCCTGGCTCATC----------GGTGCTGCTGTTCCTCTGGCACCATTGCTCTGCAGACTGTCTACGGCACATGCAACT----GGCGACACTCAGGAGGCCCCTCTAGAAGCCCCTTGCTACTCTGAGCCT-GGTCCTTCGGTGCTCCGGGGACAGGGGTGACCTTAGACTTAAGTATAGTCTTTACAAGGGCTGT--GTGACTGCCTCATACATCTCCAGGCCCTCCATTCACGTGCAGAGATGTGGCTCTTTGGCAGGGCTGTTCTCTCTGGGGGCCCTCAGGAA--CACCGGCCTTGGGGAAGGAAGAGCAAGCTG-----CACAGTTCATCCACTATGGA-TTTGTGTCTGCTT-TGCTGGCCCTCTGGAGAC-----------TAGCGGTCCCTGCAGGCT-CCTTCCCTA--------------GCCTT-GCTCCCTAGAGGCCA-GCATGGAGAGCACC-ATCTGAGCAT-GTCTCCTCAGGCCCAGGCCAGTGTCATTTCTCCCAGAGCTGGCCTGCACTGTGTCTTGGGGATA-GATATGTCTAAT---GGTCCCCTAAATCTTGGGGAGATCAGAGAGGAATGCT---GGCCCTTTTCTGCCCAGA-----------------ACATCCAATGAACCCTCTGAGCTTTACCTCCTTCCATCGGGCCTAGAAGAACAGGCAGCCTTTTGGGGTCTCTACCA---------------CCAA----ATATCAGCCCACTACAAGGGTCTACTT------------------------------------------------------TTTTCT-CTTTTCAGAGATTCCATAGTCCAGAGCTTCAAAGAGTTTATGCCCTTACCCA---------GGGAT-AAATCTCTGTGTGGGAGAAAAGCTC-ACTTCCTTTCT--------------GGCACC-ACAGAGGCCTGAAGATCTGTGTAGA-TGGGTGGCTACAGCATGGCT-CTGGGTGCTGG-CCCAGTCGCCC--TCCTTACCTGCTGA-----CTTGTTT----------CCAAGCAACCGTTGGTGGGCGCTTAAGCAGCCTATTTCTGTCTCTATCTCCATCTCCCTGACTTGCCTTCTGCACC-----CAGGCA-CCTCCCTGC-AACCTGC a score=107226.000000 s hg15.chr15_random 243691 923 + 366089 GTTCGAGTCCCGATGCTGCACTTGCCGttcgccttcgggcctcagttttcccatttctaaaatgaggacttgaataaaatcacatgcaaggcttccattcttacactcAGTGCTGGAATTAGGACAACCTCTTCATTCCGTGGGGTTGATTCTAAGATTTCAGCCTCGCTTCAGTCCTGCGGTGGGGAGATTGTGGGTA--GTCTTGGTCCAAATCGACTGCGAGGGAAACTTTGGCTTTAAAACGA-GGGGTGATTACCTGCTCTAAGGTCGACACCACGCTTGCTTGATAGTTGACCGTGCCTTAGTTTTCCCGTCAGTCAAGTGGGAAGAGCAGCCCATTTCCTGCCGCTC------------CCCGGGCCCTGTCCCGCCTGGACG------------------------------------------CCTCCCTCCAGGAGCCTGCGCCCCGGCC--CCGGGGTCAGGG-TTGGGATGCGGGCTCTGCAGGCGCCCCGGCGAACAGCTCTACCTGGAGGCTGTCCCTGCCCCGCTTAGTCCAAGGGCCTTGGTGTGGGGGCCTCCGCTGTCAAGGCGGGGGAACCGGTTCTCTCGGTTTCTCTCCCCTTCCCCAGCGGCTTCAACGCAGACGTGAGCCC--GAgccgggcccgccc-------------ccgcccccTGCTCTCCGGCTCTCACGCCGCCCCCCGAGAG-------AGGCTGCCCACCTGCCCTGTGA----CCCCTACAGTGTCCCC------------AAGAGAGTGGCCCCTGGAGAATGCACTCTGAGACAGTGACTGTCCGTGCGGAGTCCCAAAGCAGGGGCCCCTCAAGCTCTCCGGAGTGGTCACAA-----------GCCCCGCTCCCG----CCCCGGCTGGGTGTGTCAG-----------------GGATGGGGGAGAGCTTA--------------------------ACTAAATCTGCCGGCGCCCCTCCACCAAAGCCATGAGTCGGTGGTCTTCTCCCGAAGTGCATGGCCCCTCCAAGCTCCCACACTGACCACATCTCCTCCTGCC s mm3.chr11 104204651 983 + 122862689 gttcgagtcccgctcctgcccacgcccactgcattcgggcttcagtttttccttctctgaaatggggacgtggataaaatcatcttcaaagttcccatgcttaagat------------------------tccattctgtgTCGTTGATTGTGAGATATGTGTCTCCCTGTCATCCCTTGGT-GAGAACTTGAGGGTGATATAGGAATCCAACTTTACTCTGGGGGAAACCTTGGCTTAAAGATTT-GCGGTGA-------CTGCAAGATAGATAGCACATTTGCCTGAAGGTTAGGGGAACCTCATCTTCCCGGTTGGCGAATTGGGAATTAAGGCCCCTTTCCCGTCGCTCTTCTGC------CCCCCGTCTCGCCACACCCTGACGCCTCCAGCCTGCAGGGAATCCGTGGAAAGCTCTTAAGTACCCCCTCCCTTTAGGAGTTTGCCCTCTAGGTGGGCGAGATTAACG-ACGGGGCGCAGGCTCTAGGGCAGCCCC--CAAGTTGTTCTACCTTAGAAGTGTCCCTGTCTTATTTAATCCGGTGATTTTGACGTAGGGGCTTGGACAGCTAAGGTTGGAGAACCGGTTCTCTGGGTTTCTCTTCCCTTTCCCAGTGGCTTCGTCGCACACGTGAACCGTGAAGTCTGGCCCGCCCATTAGGGCCAGCACCGCCCCCTGCACGCCAGCTCTTCGGCAGCCTCTTAAGAGGCTTCCTGGTCTCTTCACCTGCCTAGGGGTCCTTCCCTACAAGGAGTGCCTGTCCGGGGGGGGGGGGGTAGCTTCTAGGGAATGCA--TTGCAACAGTGTC-------------------ACCAGGGTCCTCTAAATCTCTTTGGAGTGATCATTATAACGCGACCCCCCCCCCCCCCA----CCAATGCTAGTTTTGTCTGGTGCCTGgtgtgtgtgtgtgtgtgtgcgcgcgtg--------------------------AACAATCCCAACTGTGTGTCTTCAACAAAGTGA--AGCAGGTGGCCTACTCCGGAAGTAC-TGGTCACTCCAAAACCTTACAATGACCACTCCGTTTATTGCC s rn2.chr10 87965326 987 + 106208427 GTTCGAGTCCCGCTCCTG---ACGCCCACTGCATTC-ggcttcagttttttcttctctgaaatggggacgtggataaaatcatctccgtaactcccattcttaagat------------------------tccatTCCGTGTCGTTGATTGTGAGATATG-------CTG---TCCCTTGGT-GAGAACTTAAGGGTG--ATAGGAATCCAACTTTACTCTGGGGGAAACCTTGGCTTAAAGACTTGGCGGTGA-------CTGTAAGATAGACAGCACATTGGCCGGAAGGTTGGCAGAGCCTCGTTTTCCAGGTTGGCGAATTGGGAATTAAGGCCCCTTTCCCGCCTCTACTCTGCCCCCCTCCCCCGGCTCGCCCCACCCTGACGCCTCCTGCCTGAAGGGAATCCGTGGAAAGCTCTTAAGTGTCCCCTCCCCTTAGGAGGTTGCCCTCCGGGAGGGCGAGATTAGCGTGGGGGGCACAGGCTCTAGAGCAGCCCC--CAAGTTGTTCTACTTTAGAAGTGTCCCTGCCTTATTTAGTCCGGTGATTTTGACGTAGGGGCTTGGACAGCTAAGGCTGGAGAACCGGTTCTCTGGGTTTCTCTTCCCTTTCCCAGTGGCTTTGTCGCACACGTGAACCATGAAGTCTGGTCCGCCCATTAGGGCCAGCACCG-CCCCTGCATGCCAGCTCCCAGGCAG---CTTAAGAGGCTTCCTGGTTTTCTCACCTGCCTGGGGATCCCTCCCTACAAGGACTTCCTGTC-------GGGGTAGTAGCTCCTAGGGGATGCA--TTGTGACAGTGTT-------------------ACCAGTGTCCTCTAAATCTCTTTGGAGTGATCATTATAACG------CCCCCCCCCCCAATGCCCAATGCCAGGTTAGTCTGGTGCCTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACACAAAATCCCAACTGTGTGCCTTCAACAAAGTGA--AGACGGTGGCCTACTCCGAAAGTTC-T-GTCACTCCAAAACCCTACAATGACCGCTCCGTTTACTACC a score=180986.000000 s hg15.chr15_random 247648 1408 + 366089 GGAGTGAGCGCAGGCTCAGATCAGGGCGA---GGCAGCTTGTCCAGAGAGGCAGATAATTCCCAAACAGAAGACCCCCAAGGCGGAGGGCCCTGGGGCTGGACTCCTGGCCCCCAGGAGGTTGTTCTGAGCTTACCCTGTGGACGGATTGGAGGGTGGACCTCTTTCCCCGCAAGGGTCAAGAGGGAATGGGGGATGGTGGGAAGGCAATCTGGCCAGGAGAAGCTGCGCGGGAGACTCCCGCCATCCCCAGTCCCACCATCTCAGCCCCGCGGCCTCTTCCTCCCTGGAGACAGCCAGGATCCCGGGAGTGGCCCAGGATCCC-GGGAAATGCAGGGGAGGGGGTGGCATCTTTCCTCTTCAGGCGCGGGCCTGGCCCAGAGGCGACAGGAAGCCAGGACGCCGGGGATTGTCTCTCGCAACCGCAGCCCAGCCCCAGTCCGGGAGGAAGTTCTGCCGGGCGCTCTCCGCCGGTGCCTCACTGGTTATAGTGCTATACAGGAAACCTGGCAGCGCCGGAGCCGCGCGGTCGAGGAGGGAGCGCGGGACGCCGAGCCCACGCGCGCCTGCCGGGACAAGTGGAGACGAGGCCGGCGAGCGGACGCCCCGAGGTGCCCGGGCAGGCAGTGGGCCG--CCgagcgggagttgaggtgggaggtggggtgggggtggggaaaggggcagggttggggagggaagggtgcggc--agtggcggGTCCGCACCCGGGAGCTCCGCGCGCCTGCTCCCCTTGTCTCCGTGCTGGGGCGGGAGCTGCTCGGGC-------------------CGCATCCCACGGGGAGGAGAAGGTAGGCGAAGGGCTGCCCTCCCTCTGGAGGCGGGAGGGGAGCAGGCCCAGG-CCCCTAGCGCCGACCCAGGCGTTGACGCCGCTGTAGCTTGCGTCGCCTGG--GCAGTGGACGCAGGGGACCTCCTGGCGACGGGTGCGCTCTCGCGCTCCAGGGATCCTCTCGGCCCCCACCAATCCCTCCCCTTCTCTGTGTTC-CCGCAGGTTGGCGAAGGAGCTGTGGC-CGGGTCCCC-TTCTTATCCAGCCCGAGACACTGCGCTCCG------GTGGGCGTCCCTGCGCTGGGAATCCCTCTCGGAGTTTTTCCAGGCCCGGCCGGGTTGCTCCGGGAAAGGCCCT--GTTGGGGGAGGTGGGCCCGGAGCTGGCAG-GTCTACAATCCGGTTG-GAAGGGCTCGCAGTGGGTGATTCAGGGTGCCAATGACCTCCCCGCGAACGGGAACGCCCGCACTAGACAACCAGCCCCAGACCGGCATTCCCAGAGCCGCAGGCGGGAGGGACGC-AGGGACTCCGGGACAGCAAATCC--CCGGGGGAGAAGGGAAGGGGGAAGGCGGGACAGGGGAGGCCCACCCTCCTTGGGCTCCGCTAGC-GACCAGCCAGCGCCCCTTCAGACGCAGCC s mm3.chr11 18655245 1316 - 122862689 GAAGTGTTCACAGGCACACCTCAGAGTGCTAAGGCTGCTT-TCCCAAGAGGCAGGTAGTTTCCAAAATG--------------GGAGGATCCCGCAACTGCACTTC-GGCCGCCTGCAG---------------------------AGTGGCCGGT-GACT--TCCTCCGACAAGG-----------ATGAGGGTCAGTGGGAGTCTAATCTGGTC---AGAAGCT--GAGAGAAACTGCCTCCCCCGCAGATCT--CCATCCAGGCCCTGCCACCGCCTCCTCCCCGGAGACAG--------TCAGGTGTGGCCCAGGATCCT-GGGGAAG--AGGGGGGAGGGTGGCGTCTCTGCTCCTAGAGCGCTGGCCCGGCCCAGAGGGGACAGGAAGCCAGGACACCGGGGATTGTCTCTTGCAAGCACAGCCCAGTCCCGGCTTGGGAGGAAGTTCTGCCGAGCGCTCTCCGCC-----------GGTTATATTGTTGAACAGGAAACAGGGCATCGCCGGAGCAGGGCTGTGGAGCAGGCAGCTCCGGACGCGGACCCCACGCGCGTCTGCCGGGACAAGTGGAAGCTAGGCCAGCGGGCGAAAGTTCTAAGGTGCCCGGGC------CGGGCTGGACTGAGGGGGGAATGGCGTTGGGG--AGGATGGCGCTGAGTATTGGG--------AGGGCGGGAAAGGTGCCCCCAGGTGGC-CGTCCCCACCCTAGAGCCCCGCGCACCGCCTGCCCTTCTCGCTGCACTGGGGCTAGAGCAGTGCGAACCTGGAGGAGGGCCCGGAGGCCCAAACCCCGGGGAGGAG-CTTTAGGTGTAGGGCTGCCTTCTGTCTGGGGGCGAGAGGTGAACCAGCCGAAGTCCCCCAGTGCTGACTTAGATATTGGTGACGCTATAGCTAGGGACGACCGGGAGCAGAAGATACAGGAGACCTACTGGCTAAGGGCGC----------------CTTCCTCACCGCTCTCGC--ATCCCTCCCCTTCTCTTCGCTCACCCCAGATAATGGAAGGATCTGAGGCACAGGTCCTC-TTGTCACACAACCGGAGACACAGCACTCCCCTGTCTGTGAGCGTCCCTGCAAAGGGACTCT-------AGTTTTTCCAGGCCCGGACAGGCTGCTCCCAGAGAGAGCCTCAGAGGGCGGAGGTGCTCCCGGAATGGGTAGTGCTCTTAATCTTGCTGTGAAGGGCTCACAGTTCGTGATTCAGGGAGCAAAAGGCCCCGCTCGGAATGTGCATGCCAGGACAAGACAGCCAACTCC-GCCGGGCATTCCCAGAGCATCGCGCCCGCGGAACGCCAGGTCCTCTAGGACAACAAACCCCTCTGAGCGTTGAGGGGGTGGGGG----GGAGCAGGGCCTACTGACTCT---TGGGCTCTGCTCGCCTATCCATCAGCACCCCTTCC-ACTCAGCC s rn2.chr10 18240285 1294 - 106208427 GAAATGTTCACAGGCACACCTCAAAGTGT----GCTGCTT-TCCCAAGAGGCAGGTAGTTTCCAAAATG--------------GGAGGATCCTGCAACTACACTCA-GGCTGCCTGCAG--------------------------TACTGGACTGT-GACTCTTCCTCCTACAAGG-----------ATGAGGGTCAGTGGGAGTGTAATCTGGCC---AGAAGCT--GAGAGAAACTGCCTCCCCCGCAGATCT--CCATCCAGGCCCTGCCACCGCCTCCTCCCCGGAG------------CCAGGTGTGGCCCAGGATCCCCGGGGAAG--AGGGGGAAGGGTGGCGTCTCTGCTCCTAGAGCGCTGGCCCGGCCCAGAGGGGACAGGAAGCCAGGACACCGGGGATTGTCTCTCGCAAGCACAGCCCAGCCCCGGCTTGGGAGGAAGTTCTGCCGAGCGCTCTCCGCC-----------GGTTATATTGTAGAACAGGAAACAGGGCATCGCCGGAGCAGGGCTGTGGAGCAGGCAGCGCCGGACGCGGACCCCACGCGCGTCTACCGGGACAAGTGGAAGCTAGGCCAGCGGGCGAAAGTTATAAGGTGCCCGGGC------CGGGCTGGACTGAGGGAGGAATGGCTTTGGGG--AGGATGGCGCTGAGTAGTGGG--------AGGGCGGGGAAGGTGCCCCCAGGTGGC-TGTCCCTACCCTAGAGCCCCGCGCACCGCCTGCCCTTCTTGCTTCTCTGGGGCTAGAGCACTGCGAGCTTGGAGGAGGTCCCGGACGCCCAAACCCCGGGGAGGAG-CTTTAGGCGTAAGGCTGCCCTCTGTCTGGGGGCGAGAGGTGAACCAGCCGAAGTCCCCCAGTGCTAACTTAGGTATTAGTGACGTTGTGACTAGGGACGGCCAGGAGCAAAAGATACAGGAAACCTACTGGCTAAGGGTGTGTTCTTGC-TTCCAAGATTCCTCCCCGCTCATGC--ATCCTTCCCCTTCTCCTCGCTCTCTGCGGATAATGGAAGGATGTGAGGCACAGGTCCCCACTGTCACATAACCCAAGACATTGCGCTCCA--GTCTGTGAGCGTCCCTGCAAGGGGACGCT-------AATTTTTCCAGGCCC---------------AGAGAGGGCCTCAGAGGGCGGAGGTGCTTCAGGAATGGGTAGTGCTCTTAATCTGGCTGCAAAGGGCTCGCAGTTCGTGATTCAGGAAGCAAAGGGCCTCCCTCGTAATGTGCATGCCAGGACAAGACAATCAGCCCC-ACTGGGCATTCCCAGAGCATCGTGGAGGCGGAACGC-AGGGCCTCGAGGACAA-AAATCCCTCCGAGCGTTGAGGGAA----------GAAGCAGAACCTACTGACTCT-----------GTTCGC-TATCAATCAGCACCCCTTCC-ACGCAACC a score=2463.000000 s hg15.chr15_random 249332 109 + 366089 CCCCCACCCATGTCCCCCGGATCTTCCAGCCCTTGCCTGACCCTTTCCTTCCCC---ATCACTTCATCGGTTCCAGGAGCTAAGAGTCGACCTTTCCCCTCATCTTCCTCTC s mm3.chr8 6384514 95 - 128923138 CCCCCACCCACTGACCCCAGACTTGCCAGCCACTGCCT--CCCTCTTCCTCCTCCAAATCGTATAATCAG---------------ACATACTTTTCCCTTTATCAGCCTCCC a score=8167.000000 s hg15.chr15_random 258666 91 + 366089 AGGAATTGGGTGGGGAAGGGAAAGAAAGACAG-----AGGAGAGAGAGACAG------TCACACACAGGCAGTGGAGCTCCCCTGCACCCACCAGGGAGCTT s mm3.chr3 107157232 91 - 160674399 AGGGGTTGGGGAGCAAAGGAAAAGAGGGGAAG-----GAGACAAAGAGGCAG------GGACAGACAGACAGGTTAGCTCCTGAGCACACATCGCCGAGGTT s rn2.chr2 108614930 102 - 246339213 AGGGGGAGTGGAGCGAGGGAGAGGAGGAGGAGATGAAGagacagacagacagacagacagacagacagacagaTTAGCTACGGAGTACACACCACCAAGGAT a score=11876.000000 s hg15.chr15_random 260110 72 + 366089 CCTCGAAGCTTGGCAAAATTGAAATTGATGATGGGGAAGCTAGAAATACTTCAGTCTACATTTCGAATCCCA s mm3.chr7 51048977 72 + 134401573 CCTCAACGCCTTTCAAAATTGGAACTGATCATTGGAAAGCTTGAAATATCTCAGTCTCCCTTTCAAATCCCA s rn2.chr1 109195380 72 + 276301343 CCTCAAAGTCTTCCAAAATTGGAAGTGAACATGGAAAAGCTTGAAATACTTCCGGCCCCCTTTCAAATATCA a score=157685.000000 s hg15.chr15_random 261038 1614 + 366089 CTCAGGTTCTGGACACTTTGTTAGAACTGAGAAC-ACACAGATCCAGAACTTCCTAGCAGTT--AGTGTAAGTAGGAAATATCACTGTTC--ATATAATTCAAAGGGTTTTTAAGACCCAAAGAAGCATAGATATCTAACTCTGAGATCTCACAGTTCTCTGATGGTTCTAATAAGGAGGACATGGTATGAACAAATTATGCC--TTACTGTTCGCTGAGGTTAT----ATCAATGCCCGAACATTTCATCCA---GCAAAGCAGTCACAACTAAAAA------CAGGTACATGATG--GTTGCAGACAGCTTCTCAGTAGCCCAGAGAGTGAG-AGCTCACCAGGGCAGAAGGTCCCTGAACCAGAGGCTGGCAGTGCACATGTGCTTTGGTCAGAGG-------AGAAGGACAACCATGCCCCACGGGGCTGAGGA------------CCCAGTGGCTGGAACAAAGACATGATCCCAATTTTTTTGATACCTACTTTCTCACTTTGCCTGTGGGCCTCCACGGAGCTCCTGTGCAGCTGGCTGGACCATGGCCTATATACAATGGCTGAGTCTACACACAATCAGA-----GCCTGAAACTCTGTGGACTGTGTCTGCTTTATTCTCAGTAGGATTAATGACCCTCATTGAATTCCCATCGCCTCAAAGCTTGGCAAAATTGAAATTGATTATGGGGAAGCTAGAAATACTTCAGTCTACATTTCAAATCCCAACATAACCTGAGTAAGGGAATTGCATGCTTTTCTCATCGAAAGCTCAAATAACTTAGTAATGGTTCAAAATTGTCTCCTACTGGC------TTCTCAATTTAGCACACTAAATGGTCTTAGAGATCATTGCTCATCTTTGGACTAAGGCAGGCACAGT---------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------ACATGTTCA--------TTCTTTTGGCCTGAGCTATTACAGTAGCCTCCTAATAACTTATCTTCATCATCCTCTTTTCACTCATTCTATACTGGGCACCATGTCTGATCATTTTTTTTTCT-GATATTTGGATCAGTTCTATTAAACTGATAA-----------CCC-----------TGTGATGTCTTTT-TTTCCCTTCAATAGATCTTTAAATTCCAATCCTCACCCTAATCTACTCTTTCC-CAATATAGCACCGTTATTCACACTGCTCCCAAAATCTATTCCATCCTCTGACTTCTCACAATTTTTTTTGTCCTAAGACTCCA-TGATAATAGAGAAAAGAATTTTG--GTCTTCACAGAATGTATTGACTTAATGATATTCCAAATTTCTCTTGGGTGTCAAATATATTCCTCACCAAATATGACTGAAAGAAAACTCTATTCACCATGAATTTAAGGATCTCAAAATTATAATATCTTCTCCACTCTCATAATTCCACAGCCCCTGCTGTTACTATAATGACCTATATTGCAAAAGAGTGAATTCAATTAGAGTCCAAGAGGAAAACTGCTGGTATTTTTTTCATCTTTTGCCATCCCATACTTTATAAAGTGCAGTTAGACCCCCTGTTTGCCTCCCAGCATA---------CCAAAGTTATGTAGATTATTTTAAATAA-AATCTACTGAAAGCATGCATTTTTAAGTACCCCTTTTGTGTCCCCTAAATTACAGAGGATAAAACCAGCCATAGAGGCAAATTCCTTTAGACCTTCTCCTAGAAACAAACACTATCCATCACATAA s mm3.chr7 51048366 1746 + 134401573 CCCAGGTCCCACACATTCTG---GAGCTAAACACAATTTAAATTCAGATTTTTCTAGCAGTTTGGTTTTTTAAAAAAAGGGTCATCTTTGGGACACAGTTCCAAAGCTTCATATGTCGCATATATGTACATCTG-CTAA--CTGCGATATGATAGTCTTCTTACAGTTCCAATGAAGAAGATACAGTCTGAAGAAACTATTTTAGACATAGCTGACTTAGGTTATTTTCATCTTCTTCTAATCACTTGGTCAAATGGAAAATGAAGAAAACCACAATG--TCCACAGGTGAATAATGCAAATAT-AATAGCACACCCATATCCAACAGTCTCTTCAAATCATCAGGAGCCAGAGCCCCAAGACTGGAGGCCTACAGTGTGTGGG-----TGGGCAGATGCCTGTCCAGGAGGAC-----------------CTGAAGATCTACATTGATCCTCAGAGGCTTCACTGAAGACTTG--TCCAGTGTCTTAGTGCCTTGCTTCCTGCTTTCACCCAGAG--TTCTGTGAATCTTA-GAGCAACATGCTGGGCCA-----------------CGCAGTCTACAGACATTCAGAGATCTGCCAGAAATTCTGCAAATGATTTTCACTTTATTGTCAAAAGCATTAACACCTCTCTTTGAATTCTCATCTCCTCAACGCCTTTCAAAATTGGAACTGATCATTGGAAAGCTTGAAATATCTCAGTCTCCCTTTCAAATCCCAATACAATCTGAGCAGTAGAATCAGGTATTTGTCTCCTTGAACGTTCAAACAAATTAGTGATGGTTCATGATTGTCTCTGGATCGC------TTCT-GACTTAATGTGTGGAATTTTCTTTGAGATCATTGCTCTTCTTTAGACTAGGGGAGTCACAGCCAGTAAATTCTATGGAATTTTCTTCATATTATCTATTAAAAAAAAAGAGCACTGGGAAATCTGTTAGGACAGTTTGGAGGAGCAGTGTGAGTAATGACATTCCACTATGGGAAAGTGTAGATTAGAGTGAACATAATCCTATAAGTGATATTGAGGAAAACTGAGACATTATAACGTGTTAATAGAGTGGTTTCCTAAGTTGAAGCTGTTGCACTGACCTCTCTAGAATTTATTTTAATC--CCTTTTTTCTCTTGTTCTGAATTATGCAGCA--------------TTTTTCTTAATATTTGGCCAAGTTCCATTCTTTTCACAA-----------CCCCACTAAAACATTATACTATATTCCATTTTCCTCCAATGTA-ACTTAAATCACTATCATTACCCTAATCTACACATTCCAAAACAGAGTGTAATTAATGATACTCTTCTCAAAATCTA-------CCCTGGTATCTTA-GAGTTCTGATATCACACTTCTTTGGAGATAGTAGAAAAAGAAGATTTTTTATTGACACAGAATTTATTGACTCTATAATATCACAGGTTTCTTTTGA--ATCAAATATACTCCACTCAAAGTCTGGC--AGAGAGCACAGCATTGGTAAGAAATTTAATAATTATCAAA-TGTAATATCTTCCCCATTGTCATAGTGCCAAAGT---TCTTGTTACCATAGCAACATACACTGCAGAAAGATGGAATTATTTAGAAGC------AAAAATTATT------TTTTTCATCTTTTGTTATTCTGCACTTTACAGGTCATAGGTAG-TACCATCTTTGCCTTAAAGTACACATCAATTTCAAAAGTTATACAG---ATTTCAAATGACAAGCTACTGGAAACAGGCATCCTCCAAATACCATTGTTTGTGCT-------------AACAAACCTAGGTATAGATACAGATTCTCTTGGA-TTAGTTCTAGAGACAAGCATT---CATTACAAAA s rn2.chr1 109194772 1747 + 276301343 CCCGGGTACCAGACATGCTG---ATATCAAACACTATTTAAATCCAGATTATTCTAGTAGTT--ATGATTAAAGGAAAAGGTCATCTTTG--ACACAGTTCCAAAGCTTCATATGTCTCATAGATGTGTACTTG-CTAA--CTGAGATCTAATAGTCCTCTAACAGTTCCAATGAAGAAGGTACGGTCTGAAGAAACTATTTTAGACACTGCTGACTAGGATTATCTTCACCTTTTTCTCATCATTAGGTTCACTGGAAAATTAATAAAAACCCCAGGAGTCCACAAGTTATTAATGCAGATGC-GATAGCGTACCTGTATCCAACAGTGTCTGCAACTTGTCTAGAATCACAGCCCCAAGACAGAAGACCTGCAGTGCATGGA-----TAGGCAAATGCCTGTTCAGGAGGAT-----------------TTGAAGATCTACATTTATCCTCAAAGGCTTCACTGAAGACTTG--TCCAGTGCCTTAGTGTCTTGCTTTCTGCTTTCACACAGGG--TTCCATGAATCTCA-GTGCAGCATGCTGGAACA-----------------CTCAGTCCACAGACATTCAGAGATCAGCCAGAAATTTTGCAAATGATTTT-ACTTTATTGTCAAAAGCACTAACACCTCTCTTTGAATTCTCATCTCCTCAAAGTCTTCCAAAATTGGAAGTGAACATGGAAAAGCTTGAAATACTTCCGGCCCCCTTTCAAATATCAATACAGTCTGAGGAGTAGAATTAGGCATTTGTCTCATGGAAAATTCAAACAACTTAGTGATGGTTCAGAACTGTATCTTGACAATAAATTAGTCT-GAATAAATTAGTGGAATGCTCTTTGAGATTGTTACTCTTCTGT-GACTAAGGGTGTCACAGTCAGTAAATTCTGTGGAATTTTCTTCCTACTAT---TTCAAAGAAGAAAAATGTGGGAAAT-TGTTAAGACAGTTTGGGGGAGCAATGTGAGTAACGGCATTCTGCTTTGGAGAAGTATTGATTAGAGTGAACATAATCCTTTAAGTAATATGGAAGGATACTAACACATTACAGTGTGTTAATGGGGTGGTTTCCTTGGTTGAAACTGTTGCACTGACCTACCTAGAATTTATTTTCATC--CTTTTTTTCC---ATTCTCTAGTATGCAGCA--------------TTTTCCT-AATATTTGACCAAGTTCCATTATTTTCACAAAGAATAGCTTGTCCCACTAAAACATTATACTATCTTCCATTTTCCTCCAATGTA-ATTTAAATCACTATCATTACCAACATCTTCACATTCCAAAACAGAGTGTTATTACTGACACTGCTCTCAAAATCTA-------CCCTGATATCTTA-GATTTCCAATATTGTGCTTCTTTG-AGATAGTAGGAAAAGAAGATTTT--ATTGACGCAGAATTTATTGATTCTATAATATCACAGATTTCTTTGGA--ATCAAATATACTTCACAATAAGTTTGGC--AGAGAGCACAGCATTGGTAAGGAATTTAATAATTATCAAA-TGTAATATCTTCACCACTGTCATAATGCCAAAGTCCTTCTTGTTACCATAGCAACATATACTTCAGA--GATGGATTTATTTAGAGGC------AAACACTGTTA----TTTTTTCACCTTTTGTTATTCTGCACTTTATAGGTCATA--------CTGTCTTTGCCTTGAAGCATACATCAACTTCAAAAGTTAAGTAG---ATTGAATATGACAAGCTACTGGAAACAGGCATTCTTCAATTTCCATTGTTTGTGCT-------------AACAAACCTAGGCATAGATACAAATTCTCTTGAA-TTAGTTCTAGAGACAAACATTGTTCATTACAAAA a score=17972.000000 s hg15.chr15_random 264838 227 + 366089 TTCTGGAGTAGTCCATCTGGAGGCCACGTCAGGACTAGCCTCACAGGTAGAGTACAGGCATTCTGACTTTGGGAGCATTAAAAAGAGCATCAAACCAAATTATCTGATTCAGCCCTATATAATAGCCTAC---ATAAGCCCCAAAGATCTCTATTTTAAATTAGAAATAAAGTTAATGTTTCACTTGAACATTCTGCAGGAAAGTGGTATGAGATCAAGGTATTATTAAC s mm3.chr7 51050180 209 + 134401573 TTATAGATTGACCTAGCCACAGGATACATTAGAACTAACCATATAGGTGTCATAGG-------TTACTTTAGGAG---TAATAAAAGCACTGGTCAATGT------AATAGTTTCTATGCAATGGTTTATGAAATACTTCTAAAAGG----TGTTTCAGACCAGAAG-AAAATCAATGCTCCACTTATACTTTTCTTGGAAGAGTAGCAGCAGATCACAGAATTGACAGC s rn2.chr1 109196587 209 + 276301343 TTGTAGGTTGTCCTAACCTCAGGATACAGTAAGACTAATCATATAGGTGTCTTAGG-------TGACGTTAGGAG---TAATAACAGCATTGGTCTATGT------AATCGTTTCTATACAATAATTCATGAAATACTTCCAAAAAG----TGCTTTGGAGCAGAAG-AAAATCAAGGCTTCACAGGTATATTGCCCAAAAGTGTAGCAGCAGATCACAGAATTGGCAGC a score=129193.000000 s hg15.chr15_random 265380 1042 + 366089 CTATTAGCAACTTAGCATGAAGCACTCTGTCACCTGATAAGAACTGAGAAAGTGTAGCACAGGACAGATCAGGTTTGTCTTGATGGAAGAAAGG--AAAGAGGAAATTACTGATGGTAATCTTGAGCCGAGCACAGAGAAAGGCAAGAAGGGATGGCTCTGGTTTCAAAGAATCCATGTCTGATTCCT-----C--CCAAGCCCATTCTTTGTTATCTATTGTAATGTCAATACTCATATTAGGTAGGGAGTTCCCTTT--AATGACCTCTAAGGATTCTTTCAG-CTGGAAGAGTTGTATCCATTCATCTGCTAATCTTCTTCATCAAAGGACAGTTGGAAAGGATGCGGCATTACTCCTTACAAGAAGGTGGAAGTCTAATTTTTAAACTATGAGCT-TTTACCTTAATGTGAG-CCATTTCTTTTTAAGCTAGGCATTTACATGTACTCCAATATAATTCCTTAGTAGAATACATTTATTTTTGGTGCAAAACAAAATTATTTAGTCCAGAGACACCCTTCA-CTGGCAAAGAAAGACATTCATTGTGCAGTGCAGTAATTCAGAGAAATATTACTTCCAAGTCTTTTTAAAGTTAAAGAAGAATGTTTTAGGGCCCATTTGAAAAGTGCTATTCA-----TATGAACTTGAAGGTCATTACTCACAGATAATATTCAGGAGAACTCCTGTCTAGGCTGAGAGCAGCCACTTCTGTGCTGTTTCAAG------------------------------------------TTTTCAG-AAA---------------------CCATGGTACTGTTACTCCTCTATAAGGTAGAAAAA---CCATATCTAACATATTTGATTT--ATTCCAAAAACTCAGCAAAATCGATTTCTTTTTCACTCTTTGGAAGA----------------AAGTACAGAATGAGGAAAATCACTTCTTAAA-AAATTCATCAAAATAACTATGTTAAGCCCTTATGATTTCCAGGCCCTGAGCCCGGTTCTGGAGTCATAGAGTTTAGAAGAAAAAGATGGAAATATGCAATCCAGTGGGACTTCCTTTATCAAATGAACGCAAGGGCCTGA----TTTCTTTGGT----AGATAATGCGTTCAACTAAACGGATCTCTTTGAGATG s mm3.chr7 51050389 1123 + 134401573 CTATTGGAAA-TTAGCATGAAGTACATTTCCAGCTAATAAAA-CTAAGAAAAATTTTCATGGGACAGGTGAAACTTGTGGTCACTGGGCAAAAAGGAAAG----AACTACATGTGACTATGGG-GGCTAGGGATAGAGAAAGCTGCAGAAGAGGGACTCTGATTTTAAGGAAACACTGTCTTCACTCTATATTCTACTAAGCCCATTATTTCCCATTTATTATAAAATATGCATTTGCATTAAGTATGA---TCATTTTTTAATGATTGTTAAAGGCTTTTCTAGCCTAG--GAGTTGTACCTTTTGCTCTGCCAGTCATCTGCCCTGATGGACAGGCAGAGAGAACTATGAACCAGACTTTAGAGAAAAG--AAAGATAAATCTTTCAAATATGAGCCATTTACCCTACTGTGAGCCCATTTCATTCTGGGTTAAACATTTGAATGCATTTCATTACAATTCCATAAGGCAACACAGT--TTTTCAGGGCAAAATAAAATTCTTCATTGCAAAGAGTCTCTTCAGCTGGCAGAGAAAGGCATGCATTGTTCAGTGCTTTAATT-AAAGAGATATTATTTCCAAGTCTTTTTAAAGCTGAAGAAAAGTGATTTGGGGCCAGTTTCAAA---GTTATTCATTTATTACAAGCCAGAAGTTCATTATTTGTGGGAAATGTTCTGGAAAATTTCTGACTAAGATGAGAAGGGCCACTTCTCTACCGTTCCAAGTGTCAAACAAAAAAAAAAAAAAGGTCTTTATCATTAAAGCTTTTGTCTG-AAAGATTAAAATTCTCACTGCTGGCTGTGAAGGCATTACTTTCCTAAAATGTGGAAAAAAAACCAGGAC--ACACATTCAATTTTATCTCCATGCACTTAGTAATGTCTATTTTCTCATTATGTTTTGGGAAATTGG----GGGGGGCAGGGGTCAGAATGAGGAAAAGAACTTGTTAAATATGCCCATCAATATATAGAAGATGAGTTGGCATGTTTTTCAGGCCCTAAACAAAATTCTAAAGTTATAGAA-ATAAAAAAAAATGGTACAGATGTGCAATTTAATAGGGCTTA----ATTAAATGAA-ACAGAAACCTGACATTTTTCCTCAACAGATAGATAATGTGTTAAGCTAAGTCGATCTGCTATAAATG s rn2.chr1 109196796 1100 + 276301343 CTATTGACAA-TTAGCATGAAGTACATTTTCACCTAATAAAAACTAAGAAAACTTTACATGGGACAGGTGAAAATTGC---TATTAGACAAATA--AAAG----AACTACATGTGACTGTGGGAGGCTAGGGGCAGAGAAAGCTGTAGAAGCAGGACCCTGGTTTTAAGGAAATTATGTCTTCTCTCT-----CTACTAAGCCCACTATTTTCCATTCattataaaatataaattcatattaattaGGA---TCATTTT--AATGATTGTTAAAGATTTTTCTATGCTGG--GAGTTGTATCATTTGCTCTGCCAATCATCTGCCCGG--TGACATGCAGAGAGAACTCTACACCAGACTTTAGAGAAAAGTGAAAGATAAAT-TTCCAAATATGAGCCCTTTACCCTACTGTGAGCCCATTTCATTATAGGTTAAGCATTTGCACGCATTTCATTATAATTCCGTAAGGCGACACAGT--TTTTCAGAGCAAAATAAAATTCTTCATTGCAAAGAGTCTCTTCAGCTGGCAGAGAAAGGCGTGCATTTCTCAGTGCTTTAATT-AAAGAGATATTATTTCCAAGTGTTTTTAAAGCTGAAGAAAAGTGATTTGGGGCCAGTTTCAAA---GTTATTCATTTATTACAAGCCAGAAATTCATTATTTGTGGGAAATGTTCTGGAAAATTTCTGACTAAGATGAGAAGGGCCACTTCTCTACTGTTCCGAGTGTCAAAC-------AAAAAAAGGTCTTTATCATTAAAGCTTTTGTCTGCAAAGATTAAAATTCTCACTGCTGGCTGTGAAGGCATTACTCTTCTAGAATGTGCAAAAA----CAGGTC--ACACATGCAATTTTATCTCAATGCACTTAGTAATGTCTATTTCCTCTTTATGCTTTGGGAGATTAGTGGCGGGGGGGGGGATGCAGAGTGAGGAAAATAGCTTGTTAAATGTAGCCATCAAAATACAGAAGATGAGTCCTTGTGGTTTTCAGGTCCTAAACGGAGTTCTAGAGTTATAGTA-ATAAAAAAAA---GTGCAGATGTGCAATTTAATAGGGCTTA----ATCAAATGAACCCGGAAACCTGATGTTTTCCCCCAAC----AGATAATGTGTTAAACTAAGTAGATCTGCTGTAAATG a score=25449.000000 s hg15.chr15_random 266422 509 + 366089 AGGATATTAGCTGCGCTGCACTGTCTGTACAATTGTGTCTGTACCTGGAGGAGTTTCCACAGCAGCAGAGCCTGAGATTCTATGCATTTTAGATTTAGAAACCTCATTATACCAGTTCCTACAAGAATAGGTCTCTGAAAGGACGAATCTCACAAATCAAGCTCATAAAAAATGCATAAACAATGCTTACATCATTTATAATGAGAAGATGttcattcccagcaatagggcagagcagataattgagtatctccctagtgcagaacattcagaagtactggatactgtagcaaac--agtttcaaatggggagctgaaattccaac---------aaagtcccaagaccacattttaagacg--aatctgcaaaccagaactgtaaagcacatgagTGGACCTCACTGACA---TCTTTGTTTTATAGTAGGAGGTGGTGCTCTGGGCTGCATCAGGTAGAAATTAGACCTAGATCCACAGTAAGCCTGTCCTATATGCTGACACTGCCCCTCCCTCCCAGTAAG s mm3.chr7 51051512 364 + 134401573 AAGATTGTAGTGATATGAAACTGTTTG------------------------------------AGCA------------------------------------------------------------------------------------------------------------------AATGTTTGTATCATTCATA---AGAACATGCTTAATTCTAGCATGAGAAATGACCAGGTCACCTAACGCTTCTTTAGAAGAGAACCTTCATaaatgccagatgctataccaaacatattttcaaatacatagtaaagcttccaactaagtaagaaaattcctagggTCAACATTTGGTGGA--GAAGTGTAAACTGGAAACACAGA--ACATGAGTG---CTTTCTGATAGCTTCTTCACATTACAGCCAGAGAAAGGGCTTTGGATTTG-TCACACAGAAATTAGACATTGGTCCATATAAAAGATGCTTTGTATTTGTGTGACGCCTTCTTTGCACAGTAAG s rn2.chr1 109198835 360 + 276301343 GAAATTGTCGTGATGGGAAACTG----------------------------------------AGCA------------------------------------------------------------------------------------------------------------------AATGTTTGCATTACTCATA---AGGAGATTTTTAATTCCAGCATGAGCATTGACCAGGTCACCTAACACTTCTTTAGAGGAGAACCTTCATAAATGTCAGATGCTATACCAAGCATATTTTCAGATAAGTAGTAAAACTTCCAACTATGTAAGAAAGTTTCTAAGATCACCATTTTGGGGGTGGGAATATAAACTGGAAACATGGA--TTGTGAGTG---CTCTCTGATAGCTTCTTCACCTTACATCCAGAGAAAGGGCTTTGGATTTG--CACCCTAAAATTAGACATTGGTCCATA-AAAACATGTTTTGTAGTTGTGTGACACCTTCCTTGCACAGTAAG a score=4853.000000 s hg15.chr15_random 269274 79 + 366089 cgggggctccgctccGCACTGCCGGGCGCCGCCTCGCCATGGAcgcgcgcgggggcggcgggcggccaggggagagccc----------------------------------- s mm3.chr10 79533493 114 + 130738012 cggccgcTCCGCTCCGCACTGCCCGGCGCCGCCTCGCCATGGATgcgcgcgggggcggcgggcggccgggcgATAGTCCGGGCACGACCCCTGCGCCGGGgccgccgccaccgc a score=95749.000000 s hg15.chr15_random 269353 497 + 366089 cgccgccg-ccgcgcccccccAACAGCAGCCGC--CCCGGG------CCGAG----------GCGTTGCCCCCGGAGGCGGCGGAGGAGGGCGGCCCGCGGGGCCAGCGCCGCAGCCGCGACAGCTAGTGCGGCCGCCCCGGCATCCCGGGCACGGCGAGCACGGCCAAGGGCAGCCGGAACGGCCGAGTGCGGGCGCGGCTAGCCGCAGTGCAgccccgcggggcccgagggcccggcgcgggggcccAAGGTGTAGTTCTTGTgccccggggcggcctcggggccgcgccggggccggggccggggccggcggaggaggccggcagcgaggtggc-ggcccggcggcggagccgcgccgcagccgggccAGCTTCATGCAGCGCCACTTCGGCGCGCTCCTGCAGCTGGGCGTCAACAAGTTCTCGCTGCGGATGTTCGGCAGCCAGAAGGCCGTGGAGCGCGAGCAGGAGCGCGTCCAGTCAGCGGGGTCCTGGATCATCCACCCGTACAGCGA s mm3.chr10 79533607 469 + 130738012 cgccgccgccCGCGCCCCCTCAGCCTCAGCCACCACCCGCGCCACCCCCGAACCCCACGACCCCCTCGCACCCGGAGTCGGCGGACGAGCCCGGCCCGCGCGCCCGGCTCTGCAGCCGCGACAGCG------------CCTGCACCCCTG---------GCGCGGCCAAGGGCGGCGCGAATGG-CGAGTGCGGGCGCGGGGAGCCGCAGTGCAGC---------CCCGAGGGCCCCGCGCGCGGCCCCAAGGTTTCGTTCTCATGCCGCGGGGCGGCCTCCGGGCC-CTC----------------GGCGGCCGAGGAGGCGGGCAGCGAGGAGGCGGGCCCGGCGGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCAGCGCCAATTCGGGGCGCTTCTGCAGCCCGGCGTCAACAAGTTCTCCCTGCGGATGTTCGGCAGCCAGAAGGCCGTGGAGCGCGAGCAGGAACGCGTGAAGTCGGCGGGGGCCTGGATCATCCACCCCTACAGCGA s rn2.chr7 2487567 469 + 139049774 CGCCGCCGCCCGCGCCCCCTCAGCCTCAGCCACCACCCGCGCCACCCCCGAACCCCACGACCCCCTCGCACCCGGAGTCGGCGGACGAGCCCGGCCCGCGCTCCCGGCTCTGCAGCCGCGACAGCT------------CCTGCACTCCTG---------GCGCGGCCAAGGGCGGCGCGAATGG-CGAGTGCGGGCGCGGGGAGCCGCAGTGCAGC---------CCCGAGGGCCCCGCGCGCGGCCCCAAGGTTTCGTTCTCATGTcgcggggcggcctcggggcc-cgc----------------ggcggccgAGGAGGCGGGCAGCGAGGAGGCGGGCCCGGCGGGTGAGCCGCGCGGCAGCCAGGCCAGCTTCCTGCAGCGCCAATTCGGGGCGCTCCTGCAGCCGGGCGTCAACAAGTTCTCCCTGCGGATGTTTGGCAGCCAGAAGGCCGTGGAGCGCGAGCAGGAACGCGTGAAGTCGGCGGGGGCCTGGATCATCCACCCCTACAGCGA a score=104477.000000 s hg15.chr15_random 269850 429 + 366089 CTTCAGGTTCTACTGGGACTTCACCATGCTGCTGTTCATGGTGGGAAACCTCATCATCATCCCAGTGGGCATCACCTTCTTCAAGGACGAGACCACTGCCCTGTGGATCGTGTTCAACGTGGTCTCGGACACCTTCTTCCTCATGGACCTGGTGTTGAACTTCCGCACCGGCATTGTGATCGAGGACAACACGGAGATCATCCTGGACCAAGAGAAGATCAAG---AAGTACGTGCGCACGTGGTTCATGGTGGACTTCGTGTCCTCCATCCCCGTGGACTACATCTTCCTCATCGTGGAGAAGGGCATCGACTCCGAGGTCTACAAGACGGCGTGCGCCCTGCGGATCGTGCGCTTCACCAAGATCCTCAGCCTCCTGCGGCTGCTGCGCCTCTCGCGCCTGATCCGCTACATCCACCAGTGGGAGGAGAT s mm3.chr10 79541244 432 + 130738012 CTCCAGGTTCTACTGGGACTTCACCATGCTGTTGTTCATGGTGGGAAATCTCATTATCATTCCCGTGGGCATCACTTTCTTCAAGGACGAGACCACCGCGCCCTGGATCGTCTTCAACGTGGTCTCGGACACTTTCTTCCTCATGGACTTGGTGTTGAACTTCCGCACCGGCATTGTTATTGAGGACAACACGGAGATCATCCTGGACCCCGAGAAGATAAAGAAGAAGTACTTGCGTACGTGGTTCGTGGTGGACTTCGTGTCATCCATCCCGGTGGACTACATCTTCCTCATAGTGGAGAAGGGAATCGACTCCGAGGTCTACAAGACAGCGCGTGCTCTGCGCATCGTGCGCTTCACCAAGATCCTCAGTCTGCTGCGGCTGCTGCGGCTATCACGGCTCATCCGATATATCCACCAGTGGGAAGAGGT s rn2.chr7 2495147 432 + 139049774 CCCCAGGTTCTACTGGGACTTCACCATGCTGTTGTTCATGGTGGGAAATCTCATCATCATCCCTGTGGGCATCACTTTCTTCAAGGACGAGACCACGGCGCCCTGGATCGTCTTCAACGTGGTCTCGGACACTTTCTTCCTCATGGACTTGGTGCTGAACTTTCGCACCGGCATTGTTATTGAGGACAACACGGAGATCATCCTGGACCCCGAAAAGATAAAGAAAAAGTACCTGCGTACGTGGTTCGTGGTAGACTTCGTGTCATCCATCCCGGTGGACTACATCTTCCTCATCGTGGAGAAGGGAATCGACTCCGAGGTCTACAAGACGGCCCGTGCACTACGCATCGTGCGTTTCACCAAGATCCTCAGTCTGCTGCGGTTGCTGCGGCTATCCCGGCTCATCCGATATATCCACCAATGGGAGGAGGT a score=1093.000000 s hg15.chr15_random 270279 10 + 366089 CTTCCACATG s mm3.chr13 114408094 10 + 116242670 AAGCTGCATG s rn2.chr2 45877503 10 + 246339213 AAGCTGCATG a score=32846.000000 s hg15.chr15_random 270289 133 + 366089 ACCTATGACCTGGCCAGCGCGGTGATGCGGTTCTGCAACCTCATCAGTATGATGCTGCTGCTCTGCCACTGGGATGGCTGCCTGCAGTTCCTGGTGGCCATGCTGCAGGACTTCCCGTGCAACTGCTGGGTGT s mm3.chr10 79543021 133 + 130738012 ACCTACGACCTGGCAAGTGCAGTGATGCGCATCTGTAACCTGATCAGCATGATGCTACTGCTCTGCCACTGGGACGGTTGCCTGCAGTTCCTGGTGCCCATGCTGCAAGACTTCCCCAGCGACTGCTGGGTGT s rn2.chr7 2496973 133 + 139049774 ACCTACGACCTGGCAAGCGCGGTGATGCGCATCTGTAACCTGATCAGCATGATGCTGCTGCTCTGCCACTGGGACGGCTGCCTGCAGTTCCTGGTGCCCATGCTGCAAGACTTCCCCAGCGACTGCTGGGTGT a score=51271.000000 s hg15.chr15_random 270422 231 + 366089 CCAT--CAATGGCA--TGGTGAACCACTGGTGGAGCGAACTGTATTCCTTCGCACTCTTCAAGGCCATGAGCCACATGCTGTGCATTGGGTATGGCCGGCAGGCGCCCGAGAGCATGACGGACATCTGGCTGACCATGCTCAGCATGATTGTGAGTGCCACCTGCTACGCCATGTTCATCGGCCACGCCACTGCCCTCATCCAGTCGCTGGACTCCTCGCGGCGCCAGTACCAGA s mm3.chr10 79545736 233 + 130738012 CCAT--CTGTTGCAATTGCAGAACCACTCGTGGAGCGAGCTCTACTCGTTCGCGCTCTTCAAGGCCATGAGCCACATGCTGTGCATCGGCTACGGGCGGCAGGCGCCCGAGAGCATGACAGACATCTGGCTGACCATGCTCAGCATGATCGTAGGCGCCACCTGCTATGCCATGTTCATTGGGCACGCCACTGCGCTCATCCAGTCCCTGGATTCGTCACGGCGCCAATACCAGG s rn2.chr7 2499322 235 + 139049774 CCGTGTCTGTTGACCTTGCAGAACCACTCGTGGAGCGAACTCTATTCGTTCGCGCTCTTCAAGGCCATGAGCCACATGCTCTGTATTGGCTACGGGCGGCAGGCTCCCGAGAGCATGACGGACATCTGGCTCACCATGCTCAGCATGATCGTGGGCGCCACCTGCTACGCTATGTTCATTGGGCACGCCACGGCGCTTATCCAGTCCCTGGACTCGTCACGGCGCCAGTACCAGG a score=33054.000000 s hg15.chr15_random 270653 147 + 366089 AGTACAAGCAGGTGGAGCAGTACATGTCCTTCCACAAGCTGCCGGCCGACTTCCGCCAGAAGATCCACGACTACTACGAGCACCGTTACCAGGGCAAGATGTTCGACGAGGACAGCATCCTGGGCGAGCTCAACGGGCCCCTGCGGG s mm3.chr9 59032521 147 + 124467299 AGTATAAACAGGTGGAGCAGTACATGTCCTTCCACAAGCTCCCGCCTGACACCCGACAGCGCATCCATGACTACTATGAACACCGCTACCAAGGCAAGATGTTTGATGAGGAAAGCATCCTGGGTGAGCTGAGTGAGCCACTTCGAG s rn2.chr8 60250089 147 + 127756414 AGTACAAGCAGGTGGAGCAGTACATGTCCTTCCACAAGCTCCCGCCTGACACCAGGCAGCGCATCCACGACTACTACGAACACCGCTACCAGGGCAAGATGTTTGACGAGGAAAGCATCCTGGGTGAGCTGAGTGAGCCGCTTCGAG a score=90936.000000 s hg15.chr15_random 270800 387 + 366089 AGGAGATTGTCAACTTCAACTGCCGGAAGCTGGTGACCTCCATGCCGCTGTTCGCCAATGCTGACCCCAACTTCGTCACGGCCATGCTGACCAAGCTCAAGTTCGAGGTCTTCCAGCCGGGTGACTACCTCATCCGCGAAGGCACCATCGG---GAAGATGTACTTCATCCAGCACGGCGTGGTCAGCGTGCTCGCTAAGGGCAACAAGGAGATGAAGCTGTTCGATGGCTCCTACTTCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATCTGCCTGCTCACCCGGGGCCACCGCATGGCGAGTGTGCGGGCCAACACCTATTGCCGCCTCCTTTCGCTGAGCGTGGACAACTTCAACGAGGTGCTGGAGGAGTACCCCATGATGCGGCGCGCCTTCGAGACGGTGGCCATCG s mm3.chr10 79550531 541 + 130738012 AGGAGATTGTGAACTTCAACTGCCGGAAGCTGGTGGCTTCCATGCCGCTGTTTGCCAATGCAGACCCCAACTTCGTCACAGCCATGCTGACAAAGCTCAAATTTGAGGTCTTCCAGCCTGGAGATTACATCATCCGAGAGGGGACCATCGGGAAGAAGATGTACTTCATCCAGCATGGGGTGGTGAGCGTGCTCACCAAGGGCAACAAGGAGATGAAGCTGTCGGATGGCTCCTATTTCGGGGGTGAGCACCCTGTGGCAAGGCTGAGATCTGGATGGGATGGGACC-TGGGGAG----GTCCCAGGAGGGTTTGACCCAGCAGCAGGCCAGCTCTGAGCATGTGCTGGGCAGGCAGTGGCATAGTTTGGCTGCTGAGGCACCACCCTTGTTTTCACAGAGATCTGCTTGCTCACGAGGGGCCGGCGTACGGCCAGCGTGCGAGCTGACACCTACTGTCGCCTCTACTCACTGAGTGTGGACAATTTCAACGAGGTGCTGGAGGAATACCCCATGATGCGGCGTGCCTTTGAGACTGTGGCTATTG s rn2.chr7 2503970 530 + 139049774 AGGAGATTGTGAACTTCAACTGCCGGAAGCTGGTGGCTTCCATGCCGTTGTTTGCCAACGCAGACCCCAACTTCGTCACCGCCATGCTGACAAAGCTCAAATTTGAGGTCTTCCAGCCTGGAGACTACATCATCCGAGAGGGGACCATCGGGAAGAAGATGTACTTCATCCAGCACGGGGTGGTGAGCGTGCTCACCAAGGGCAACAAGGAGATGAAGCTGTCAGATGGCTCCTATTTTGGGGGTGAGCCCCCTACGGCAAGGCTGAGATCTGGATGGGGTGGGACTGTGGACAGCTCAGACCCGGGGAGGTTTGACCCAGCGTCGGGTGAGCTTTGAGCGTGGGCTGGGCAGGC----------------TGCTGAGGCACCATCCTTGTTTTTACAGAGATCTGCCTGCTCACGAGGGGCCGGCGCACAGCCAGTGTGCGGGCTGACACCTACTGTCGCCTCTACTCACTGAGCGTGGACAACTTCAACGAGGTGCTGGAGGAGTACCCCATGATGCGGCGTGCCTTTGAGACCGTGGCCATTG a score=258732.000000 s hg15.chr15_random 271187 1365 + 366089 ACCGCCTGGACCGCATCGGCAAGAAGAATTCCATCCTCCTGCACAAGGTGCAGCATGACCTTAACTCGGGCGTATTCAACAACCAGTAGAACGCCATCATCCAGGAGATCGTCAAGTACGACGGCGAGATGGTGCAGCAGGCCGAGCTGGGTCGGCGCCTGGGCCTCTTCCCGCCGCCGCCGCCGCCGCAGGTCACCTCGGCCATCGCCACGCTGCAGCAGGCCGTGGTCATGAGCTTCTGCCCGCAGGTGGCGCGGCCGCTCGTGGGGCCGCTGGCGCTCGGCTCGCCGCGCCTCGTGcgccgcccgcccccggggcccgcacctgccgccgcctcacccgggcccccgccccccgccagcccccTGGGCGCGCCCGCCAGCCCCCGGGCACCGCGGACCTCGCCCTACGGCAGCTTGCCCGCCGCCC------CCCTTGCTGGGACCGCCCTGCCCTCGCGCCGCCTGAGCCGCGCGTTGCGCCCACTGTCCGCCTCGCAGCCCTCGCTGCCCCACGGAACGCCCGT------CCCAGCGGCCTCCACACGCCCGGCCAGCAGCTCCACACCGCGCCTGGGACCCACGCCCGCTGCCCGGGCCGCCGCGCCCAGCCCGGATCGCAGGGACTCCGCCTCACCCGGCGCCGCCAGCGGCCTGGACCCCCAGGACTCCGCGCGCTCGCGCCTCTCGTCCAACTTGTGACCCTCGCCAACCGCCCTGCGGGCCCAGGAGGGCCGGAGGCGGGGCCGTCATCCAGACCAAAGCCATGCCATTGCGCTGCCCCGGCCGCCAGCCCGCCCAGAAGCCACAGACAAGACATAGGTAGCCGTAGTTGGACTGACGGGCAGGGCCGGCGGGGCAGCCCCCTCCGCGTCCCCGGCCGTCCCCCCTCATCGCCCTGCGCCCACTCCCATCGCCCCTGCCCCCGGCGGCGGCCTCGCGTGCGAGG--GGGCTCCcttcacctcagtgcctcagttcc--cctaggtgtaaaacagggaCGGGGCGGCCCAGTGGCTGAGAGGAGCCGGCTGTGGAGCCCCGCCCGCCCCCCGCCCTCTAGGTGGCCCGCCGTCCGATGAGGATCGTTTTTTAAGTGCAATACTTGGCCCACCGGCTTCCCGCTGCCCCCATCGCGCTCATGCAATAACCGACCCGGCCCCGGTCCACGCGCGTCCCGCGGTGACCTTGGGGAGCAGCACCCCAGCTCCCTCCAGCACTGGCACCGAGGGGCGGGCCT---GGTTGCGCCGGGCGCGGGGGCGAGG----------GCCACCGTGATGAATGTACTGACCAGCTGAGGCAGCAGTGCCCCCACCGTGGCCCCTACGCCCAATTAACCCCCACACCCCCATTCCGCGCAATGAACGACAGCATCGGC s mm3.chr10 79551705 1266 + 130738012 ACCCCCTG---CCCACAGGCAAGAAGAACTCCATCTTGCTGCACAAGGTTCAGCATGATCTCAGCTCAGGTGTGTTCAACAACCAGGAGAATGCCATCATCCAGGAGATTGTCAAATATGACCGTGAGATGGTGCAGCAGGCAGAGCTTGGCCAGCGTGTGGGGCTCTTCCCACCACCGCCACCACCGCAGGTCACATCGGCCATTGCCACCCTACAGCAGGCTGTGGCCATGAGCTTCTGCCCGCAGGTGGCCCGCCCGCTCGTGGGGCCCCTGGCGCTAGGCTCCCCACGCCTAGTGCGCCGCGCGCCCCCAGGGCCTCTGCCTCCTGCAGCCTCGCCAGGG---CCACCCGCAGCAAGCCCCCCGGCTGCACCCTCGAGCCCTCGGGCACCGCGGACCTCACCCTACGGTG---TGCCTGGCTCTCCGGCAACGCGTGTGGGGCCCGCATTGCCCGCACGTCGCCTGAGCCGCGCCTCGCGCCCACTGTCCGCCTCGCAGCCCTCGCTGCCCCATGGCGTGCCCGCGCCCAGCCCCGCGGCCTCTGCGCGCCCGGCCAGCAGCTCCACGCCGCGCCTGGGACCCGCACCCACCGCCCGGACCGCCGCGCCCAGTCCGGACCGCAGGGACTCAGCCTCGCCGGGCGCTGCCAGTGGCCTCGACCCACTGGACTCTGCGCGCTCGCGCCTCTCTTCCAACTTGTGACCCTTGAgcgccgccccgcgggcc------------gggcggggccgTCATCCACACCAAAGCCATGCC-TCGCGCCG-CCCGCCCGT--GCCCGTGCAGAAGCCATAGA-GGGACGTAGGTAGCT----TAGGA-----------GGCGGGCGG-------CCCTGCG----CCCGGCTGTCCCCC--CATCGCCCTGCGCCCACCCCCATCGCCCCTG-CCCCAGCGGCGGCCGCACGGGAGAGGGAGGGGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGG------ACAGGGACAGGGCGGCCC--TGGCC--GAGGACCTGGCTGT---GCCCCGCATGTGC-----------GGTGGCC-----TCCGAGGAAGAATATGGATCAAGTGCAATACTCGGCCCGCCGGCTTCCCGCTGCCCCTGGCAAGCTCACGCAATAACCAGCCC-GCCCCTGCCCACGCG---TCCGTGGTGAC--------------------CTCCCT------CGGGCACCCAGGGGCGGGCTTCACGGCCAAGCC-GGCGTGGGGGTGAGGCTGGGTCCCCGCCGTCGCCATGAATGTACTGACGAGCCGAGGCAGCA-----------GTGGCCCCCACGCCCCATTAA--CCCACAACCCCATTCCGCGCAATAAACGACAGCATTGGC s rn2.chr7 2505221 1265 + 139049774 ACCTCCTG---CCCATAGGCAAGAAGAACTCCATCTTGCTACACAAGGTTCAGCATGATCTCAGCTCGGGTGTGTTCAACAACCAGGAGAACGCCATCATCCAGGAGATTGTCAAATATGACCGTGAGATGGTGCAGCAGGCAGAGCTGGGCCAGCGTGTGGGGCTCTTCCCACCACCGCCACCACCGCAGGTCACGTCGGCCATCGCCACGCTGCAGCAGGCCGTGGCCATGAGCTTCTGCCCGCAGGTGGCCCGCCCGCTCGTGGGGCCCCTGGCGCTAGGGTCCCCACGCCTCGTGCGCCGCGCGCCCCCAGGGCCTCTGCCTCCTGCAGCCTCACCAGGG---CCACCCGCAGCGAGCCCCCCGGCTGCACCCTCGAGCCCTCGGGCACCGCGGACCTCACCCTACGGTG---TGCCTGGCTCTCCGGCAACGCGTGTGGGGCCCGCATTGCCCGCACGCCGCCTGAGCCGCGCCTCGCGCCCACTGTCCGCCTCGCAGCCCTCGCTGCCCCACGGCGCGCCCGCACCCAGCCCCGCGGCCTCTGCGCGCCCGGCCAGCAGCTCCACCCCGCGTCTGGGACCCGCACCCACCACCCGGACCGCGGCACCCAGTCCGGACCGCAGGGACTCAGCCTCGCCGGGCGCTGCCAGTGGCCTCGACCCACTGGACTCTGCGCGCTCGCGCCTCTCTTCCAACTTGTGACCCTTgcgcgccgccccgcgggcc------------gggcggggccgTCATCCACACCAAAGCCATGCC-TCGCGCCG-CCCGCCCGT--GCCCGTGCAGAAGCCATAGA-GGGACGTAGGTAGCT----TAGGA-----------GGCGGGCGG-------CCCTGCG----CCCGGCTGTCCCCC--CATTGCCCTGCGCCCACCCC-ATCGCCCCTG-CCCCAGCGGCGGCCGCACGGGAGAGGGAGGGGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGG------ACGGGGACGGGGCGGCCC--TGGCC--GAGGACCTGGCTGT---GCCCCGCATGTGC-----------GGTGGCC-----TCCGAGGAAGAATATGGATCAAGTGCAATACTCGGCCCGCCGGCTTCCCGCTGCCCCCGGCAAGCTCACGCAATAACCAGCTC-GCCCCTGCCCACGCG---TCCGTGGTGAC--------------------CTCCCT------CGGGCACCCAGGGGCGGGCTTCACGGCCAAGCC-GGCGTGGGGGTGAGGCTGGGTCCCCGCCGTCGCCATGAATGTACTGACGAGCCGAGGCAGCA-----------GTGGCCCCCACGCCCCATTAA--CCCACAACCCCATTCCGCGCAATAAACGACAGCATTGGC a score=19782.000000 s hg15.chr15_random 285344 289 + 366089 TTACACATATTAAAAACACT--TTTGCCCAGTCTGTTGCTTTTTG-CATTAAAAATGCCCTTTGACAACTTTAAATCTGATTTTGACACTGTGCTGCTTAGAGCACTTCACTGACTTTTGAAGCAAATTCTAAAAGTTTTCACCTGGCCGGGTGCCCTGCGTGAGCGGCCTCACTGGCTCTCACTTACACTCCCGCTGTCCCCACTTCTCGCCCGGTTCCTTCCAGCCTCCTCTGCTTCTTCGCATCCCTGCCTCTTCCACCTCTGGGC---CTCCTGCTGGAGATTCTCTTCTC s mm3.chr7 83275901 239 - 134401573 TTATATGTGTTATAAATACTTATTTCCATAGTCTGTGGCTTTTTA----------------------------GGTATGGTTATGTCACTACACTGCTTAGAAAATTTCACTAGACATCTAGGCAAATCATAAACTTTGTAACTTGCCTTGGCAGCCTGTATGAGCTGCCTTCC------------------------GCCGTCCTTCTCA--TGGT--CCTTTGGTTTTCCCTGTTTCTTCACATCCCTGAGGCTTGCATCCTGGGACCCATTATTGGTGGAGAGTCTCTTCTC s rn2.chr1 167026554 249 - 276301343 TTATATGTATTATAAA-ACGTCTTTTCCTACAGTGTTGCTTTTTGTCATTTGTAATGCAC----------TTGGGTATA---ATGCCACTGCACTATTTAGAAAGATTCATTAGCCATCTGCATAAATCATAAACATTATAATCTGCTTTGGCAGCCTACATGAGCTGCCTTTC------------------------TCCCTCCTTCTCA--GGGT--CTTGTGGTTTTCCCTGTTTTTCTACATCCCTTAGG-TTACATCCTGGGAC---TTATAGGTGGAGAGTAACTTCTC a score=23033.000000 s hg15.chr15_random 285637 212 + 366089 TGCATTCCTGTGAGAGACTGATGGGCATTGAGGGGTGAGCAGTAGCAGTTGTAAAA---TTGATCAAAGATGGTCATATACC-----CAT-TGTGGGGTTTATCACATTTCTTGTATTGTTCTTCACTGAGTT-TCCAACAGCCATTTTATTGATTAATGCTAAAATGGAAACATATATCTATGGTTCAAAAT--TTAAAATATTTAAGAATCTGTAGTAAAAA s mm3.chr7 83277001 216 - 134401573 tgTATTCCTGAGACAGACTGATGGACACCAAGGAATAAGTAGTATCAGTTACAATAGACCTGAGCAGCAATGGGTGTGAAGTTGAAGCATCTTAGGGGTTGACTATGT---TTATATTTTTCTTCATTGTGCTCTCCAATAAATACTTTATTCATT-----TTAATTAGAAACATATAAGCATGGGGAAAAAAATTCAAAAGCAAAATGAGCCAGCAGTCAAAA s rn2.chr1 167030127 212 - 276301343 tgTATTCCTGAGATAGGTTGATGGACATTGTGGAATAAGCAATGTCAGTTACAATAGCCCTGAGCAGCAATGG-TGTGTATATGAAGCAT-TTAGGGGTTTATCATGA---AAATATTCTTCTCCATTGTGCTGTCCAATAAATACTTTATTTATT-----TTAATTAGAAACATATGTGCATGGGAAAAGAA--TCAAAAGAAACAAGAGCCAGTAATCAAAA a score=29454.000000 s hg15.chr15_random 286369 458 + 366089 TCAGGTATTTGATGGATGCTGCCAATTGATTGTTTGATGGCAGTTGTTCTCCATGGGCCCAGGCCGTTCTTCTCAATATGACTCATCTTGGAGAAGGGACAGTCAGTAGCCCCATT-GGCTGAGCTAGTACTGCCGAGGGGTGGGATGGGA--GTGTGGCGGGAT-GCGGGATAGGGAAAGCCTATCTACGGCTTTCACGTGGGTGTGTTCTTGAGTGCCCTCCAACAA-ACCTGCTCTTTCTTCGCCCTGGGGACACTCCTTCACCTTCCCCAGACTTAGACTCTTAAGCCCTTCCAGCTTCTCCACTTTCCCGCTGTGTGCCTCTGGCCCTCTTCCATCAGGGAAAGCAGCTGGGGCCGGAACATACAAGTGAACACGGAACCTGCCCTTTTAAG----AGCACGTGTATCCTGGCC--------CAAGGTCTCAGGTGGCAGAGATCAACTTTTTATTGGCTCTCGAGCTCC s mm3.chr7 83293365 419 - 134401573 TCACATATGTG-TGGTTGCTGTCAGATGATTAATGGATAGCAGTCTTTCTAAGTAATCCCAGGCTATTATTCAT-GTCTGACTTTACTTGAAG-AGGGATAGTGAACAATTCAATTCCGCTGAGACAGTA---------GGAGAGAAGGTAAGGTGTAGTGTGATAGCAGTATCAGGGAAGATAGTCTAATGCTTTGACTTGGGT-TGTCTCTATAAATCTTCCAATGATATCTACTATTTCTTGGTCTAAAG---ACTCCTCAAGCTCTTCC-----TAGATTTCTGAG-------------------ATGTTGCTGTGAACCTGTGACTTCCTATCATT-GTAGAAGCAGCT--GTCTGAAACACGAAGCACAACAAGGATCTT--CCTTCAGAGGAGCAGCATTTGCTGCCTGGAG-TACCACGTGAGATGCCATGTAACTGAA--CAATTTGTTG--------CAAGCTTC s rn2.chr1 167041181 413 - 276301343 TCACATGTATA-TGGTTGCCGTCAGATGGTTAGTGGATAGCGGTCTTTCTATGTAGGTCCAGGCTATTATTC---GTCTTATTTCTCTTGAAG-AAGGATAGTAAACAACTCCATT-----GACCCTTTA---------GCAGGAAAGGTAAGGTTTAGTGTGACAGCAGCATCAGGGAAAACAGTGTAATGCTTTCACTTAGAC-TGTCTCGAAAAGTCTTCAAAGGATACATACTACTTATTGGTCTAAGG---ACTCCTCAAGCACTTCC-----CAGCTTTCTGTG-------------------TGGCTGCCATACACCTGTAGCCTTCTATCATT-GTGGAACCAGTC--GTCTAACACACGAAACAAAACAAGAATCCT--CCTCTGGAGGAGCAGCCCTTGCCGCCTGGAGATACCAGGTAAGATGCCATCTAACAGAA--GAACTTGTCA--------CTAACTTC a score=244035.000000 s hg15.chr15_random 287419 2143 + 366089 GGAAAATCATCTT-----------------TAAACAGAAAT------------CAAT----------TTATACT--------------------TTTTCTGAGTAAATTTCTATCCTCATCTTTGAATTTCCCTTACATAATAATGTAGCTGA-----CATAAGATTAAAATGAA---TCAAAACCACTA-----------------AAGT-----------------AGTTTTACATACTTTC-------------------------------------AAA-AAGAGGATGTAG---------------------------AGCTTTAATATCAT-----CATTT--TTTGGAAGAACCTAGG----------GTCCTTAGCTCAGCATTTATTATCTGTTAGGAACCTGATGAAACC---CACTGAGACCTTTCAAATTGGTTCTTCCCCATGTTTTTCTGAGGCTATCTAAATGGGCAAGGAGATAATACAGATAGAAGGAAGTTGCTGTATTGGGAAGGAAACAGGAATTGGAGGCCAGGAAAGGAGCTTAGCTACAGCAGAGACAAGAGGATGATCAAATTCGGTGTTTTTCTATGACCAAG-TTAAGAATTGCATTGATGATCTGCAACACTTTTTTTTTCTTTTTCTGTTTTAACACA-ACAATGTGGACGGAGAATCTTTTCTGTCATGATTATAATCGTTAATATAATTGCTGTGACTATTCAACCTTCAGAAAGCTGGTTT-CCATCCAGCCCTGGCTCTGGGGCTCACAGGCTCTGTTGCCACATAAGGAAGCAGCACTGGGCAAGTTCCTG-GACCACTTGCACCAGCACCATAGGGAGCATGAATCCACT-GGTGATTTGTGGTTGTTCATTTATTTCGTATAATGAGAACAAACTCCCTGCCACATTTAAATAAAAGCCTAATTACATCTCCATTGCTACAGATGCTATTACTACCTTTCTGACTGGCTATAAAAGTTAATGAGTTTTTTATTGCTTTGCAGAGTTTCAAAATAAAATGCAAAGTTTAGAGATAGATGCTATATAAGGTGAGGTCCACTCTGCTTTGCTCTTTTT---GAGGGAACCTAGAACCTTAA-----------TTTAATGCTTTTCATTTTAGAATATGGCCTGCTTTGCATTATTTCCCAT-TTTTTTGGACATAAGTATGGCACAGGGATTAAATATAACTAAGCACCATTGAAGAAAATTGCATCAAATCAGCTGAAGATAAGTGAAGAATGTTTTTATGAGCTACACGTTTTTGAAAGAGATACACAAGGCTGACAACCTAAT-AAAAGTTTAATAATGTGTGCTCACCCATTTGCTAT--GCTTTCAAGGTCCTCTGCAACACTGATGTGCTTGGGAACTTCCAGGATGGATTTCCAACTGTTAGTCACCAACTAGCAGAGGTTAGTTGTATTGTGCTGCCAGTCTCATATATGTAAACCTGAATTTGTTTTTATTCCTTCCTGCATTGCTTGATTTTTAAAAATTCAGTTACTCTAGGAAAAGAAAAGCCAAAATAA-----GCCAGAAATTTATATTTTTTCTTCATATTTCAAGAATCATTCTAAAAGCAAGTGATAAAGTTAACTAATTTCTCTCTGCATTTAGTACAGTTACTTTATCTTCCCAAAGAGGAAACCAAGGCCTGGAATCAATGCCATGTAGGCACGTGCAGGTCTGTGTGCTACACTGTGGTGGCACCGCACAGGGCACCTGGAAG-----CATGGATTTGAGCCTGGTCTGCACAGAAGCCTGCTTTTCAAGAGT------TAAAC-----GAGGCAAAATAACTTGGCACAATGCATTTCACATGCAGTGCTTACTGAATGCCATGAAAAAGCTGGCACTATGCCAGGGATGGAAGTTCAGGGGCAAAGACATTGTCCCA-TCTTCCAGGGACTCTCCCTCCACAGCTGGGGCTTAGGAATCATAATGCAACCAGCAAGTCAACTTCCAGGATTAAGGTTAGAAGAGACACCT---------------AAG--------TTGAGGAACCACCTGGAGGTCTTCCT-GGAG---------GCTAAGGAGTTGGCTAAGGTTGTAGGCTGAGCTAGTAGTGG-TGGGCAGGTGAGTATGGAGGAGCCGAGGCTGCAGGCTGGT-GAGCCCCGTTAGCAGAGGCTGCAGGGCCAGCACTGCTGACTAT--GGATCTGGTGCCAGACCTTGTCTGCGTGGCAGCTGGACCAATGGGCAGGGAGCAGG-TGGGGCATGCGTTCTTCGGGCTTCAATCATGTGCCTCAGggaatggggagacatggaggatttcaagtggaggaatagtgt-attagatttccttttcata-acagtcaccctaactgcCATTTGTACAAGTGTTGA s mm3.chr7 83294207 2243 - 134401573 gagaaattatcttacact--ctccattctataaaaaaatatagggcagctctgcaacctgctgaatattgtactgaaaagtaaaaattagatggttgtgtgACTAAACTTCTGTGCT-----------------------ATTATAAAGCTGAAAAGTCACTATGTCAAAGTGTAAGTCCAGAACCACTATTTGTTCATGCATGTGTATGTGTGTGTGTGAGTGTTTTCATTTTGTTTCCTTCCCTCCCCACCCCCCACCCCCGTTTTGAGTTTTCTATATAGGGAATGAGATAGGCTAAGATTAGGATCACAAATGCTAATCTAGCCTTTCTATTTT-----CATCTCCTTTGGGAAAATTTAAGTCATGCCAAGGAGCCTGGCTCAGCATTCCTTGTCTGT------------GAGACTTCACAGGGAGACCTTCCCGG-----TCTTTTCCATGCTCTGCTGAACATGCCTAATTAGTCAGGA-GATGATGGAGACAAGAGGAAATTGCTGTGTTGGGAGAGAAACAAGAATTAGAGTCCTAGAAAGCAGCTTAGTCAGAGCAGAGACAAGAGGATAATCAAATTTGATGTTTTCCTAT--CAAAAATGAATAATTTAACTGATGAATTATGATA--------TATCTTTCCAGTTTTTATAGATGCAATGGGAACAGA--CTATTTC------TGAATATTATTATTAATAGAATGACTGTTGCTATCCAAACTTTCATAAGATATTTTTGTACCAAGACCTTGCT-----------------TATTGTAGCATGTAGACAAAGTGTTGGACATATTTTCGTGTCTACCATCTCTAATGTCACATGGATGATGAATTCAGTGGGTGATTTGTTGCTGTTCATTTGTTTCCCATAATGAGCATAAACTCCCTGCCACATTTAAATAAAAGGCCAATTATAT--------CTACAAATGCTAT---TACCTTTTTGTCTGGCTATGAAAGTTAATGAGTTTCCCACTGCTTTGCAAAGTTTAGAAATAAAAGCC----TTCAAACAT--ATGCCATATAATGCAGAGTCCACTCTGCCTTTTTTCTTTTTAAAAGAGGACCCAGCATCTCAATCACTTTGCCCTTTACAGCTTTTCATTTTAGAATATGGCTCACTTTGCATTATTTTGCTTGCTTTTTGGACATAAGTATAACAAAAGAATTAAATATAAGTAA----CATTGAAGAAGATTGTATCAAACCAGCTGAAAAGAAGCAAAGACCATTTTTATGGGCAACATGTTTTTGCAGGAGATACACAAGGCTGGCAGCCTAATAAAAAATTTAATAGCATGAACTCACTCATTTACAACAGGCTTTCAAGGTCTCTAGCAACAAAGA---ACTTGGGAGGTCTT-GGAT-AATCCTCCCTTGCTAATCACCAACTAA-------TCTCTGCATTG---TGTCTGTTCCATATAT-TGAATATAAATCTGCTTCTA-TCTCCTATGCATCACTTGATTTTGAATAATTCAGT-----TAGGGAAAGGAGTGCCAAAATAACCATCTCTAGAAATTTCAATGGTT--TTAATATTTCAAGAGTCATTCCAAAATCAAAT----AAGTTAGT--A-TTTTTCTTGCAGTGAATCCA------TCATTTTACATAGAAGGAAACAGTAGCCTAGAGCGAATGCCACATGACCTTGTACA-GCCTGTGTATT--ACAATGGTAGCTTTCTTGAGCACACTTGGGAGGAAAAGATGGATTCGACCCTCTTAGACATGGAATAA------TCAAAAGCACATTGTGACCCCTGAGAGGTAAACATTCTTAGCACAATGTATTTTACATTCTGTGGTTACTGAATTTCATGGAAATATTTAGACAAAGACAATG--AGAAAGACAAAGATAAAGGCATTAGCTAGCTCTCCTGGGTTATTTCCTTTCAAAACTAGATAGTGTAAATCACAGTACAACCAACAAAACAACTTCCAGAACTAAGATGATTAGAGGAACTCAATGTTACTAGA-GCAAG-ACATTTCTTATGAAACTA--TTGAAAACCTCAT-GGAAACCCTCACTGCTGAAGAG-------AAACTTGAACCTAAGCTGGAAGTGACCAGCTAGCAAAGCCTGAAGCAGTGGAGGCATTAGGCAGCTACAGAAATATTTGCCAAGA--ACAGGGGAAGGGCTTACAGTCTACGTGTCCTGTTG---TATTGTGTCAGGTTGGCAACTCGATGAATGGGCAAGGACCAGGCTCCTTCATGC-TTCTATGGGTTTCAAGCATTTGTTTCAGGAAATGAGGAAAGCTGGGAGAGTTTAAATAGATGAATAGTGTCATTTGAATGACTTAAAAAT-ATAATCATTCTGAATGCAAATGGTAGAAGGGATGA s rn2.chr1 167042067 2214 - 276301343 gaaaaactacctcacacaaactctactttataataaaatatagaacagctctgcaatctgctgaatattgta-tggaaagtaaaagtcagatggtcgtgtggctaAACGTTTGCACT-----------------------ATTATAAAGCTGAAAAGTCATTGTGTCAAAGTGTAAGGCAAGAGCTACTATTTGTTCATGCATGTTTATGTGAGAGTGTGTG------ACTTTTGTTTCTTTCCCCCC-----------------TTTCAGTTTTCCATATAAA-AATGGAATAGGC-AAGGTTAGAATCACAAATACTAAACCAGCCTTTCTATTTTAACATCATTTCCTTTGGGAAAATTCAAGTCATGTCAAAGAGCCTGGTTCAGCATTCCTTGCCTGTATAGAATGTG-TGAGATTTCACAGGGAGACCTTCCCAG-----TCTTTTCTATGCTCTGTTGAACCTGCCTAATTAGGTAGGAAGATTACAGAGATGAGAGGAAATCACCATGTTGGGAGAGAAACAAGAATTAGAGTCCTAGAAAGCAGCTTAGTCAGAGCAGAGACAAGAGGATAATCAAATTTGATGTTTTCTCAT--CAAAA-TGAATAATTTAGCTGATGAATTATGATA--------TATCTTTCCAGTTTT-ATAGACACAATGGGGACAGAGACTATTTC------TGAATATTATTATTAATAGAATGACTGTTGCTATCCAAACTTT--------------GCACCAAGCCCTTGCT-----------------TACTCTAGCATGTAGACAAAGTGTTGGGCATATTCTCATGTCTACCATCTCTAATGTCACGAGGATGATGAATTCAGAGGGTGATTTGTTGCTGTTCATTTGTTTCCCATAATGAGCACAAACTCCCTGCCACATTTAAATAAAAGGCCAATTACAT--------CTACAAATGCTAT---TACCTTTTTGTCTGGCTATGAAAGTTAACGAGTTTCCTATTGCTTTGCAAAGTTTAGAAATAAAAGGC----TTCAAACAT----GCCATATAATGCAGAGTCCACTTTGCCTTGCTTGTTTTTAAAAGAGGACCTAACATCTCAATCACTTTGTCCTTTGCAGCTTTTCATTTTAGAATATGACTTGCTTTGCATTATTTTGTTTGCTTTTTGGACATAAGTATAACAAAAGAATTTAATATAAGTAA----CATTGAGGAAGATTGTATCAAACCAGCTGAAAAGAGACAAAGACCATTTTTATGGGCTACATATTTTTGCAGGAGATACACAAGGCTGACAGGCTAATAAAAAATTTAATAGCATGAACTCACCCATTTACCACAGGCTTTCAAGGTCCCTTACAACAAAGA---ACTTGGGCGGTATT-GGAT-AATCCCCCCTTGCTAATCACCAACTAA-------TCTCTGCATTG---AGTCTGTTCCATATAT-TGAATATAAATCTGATCCTG-CCTCCCATGTGTCACTTGATTCTTAATAATTTATTTATCCTAGAGAAAGGAGTGCCAAAATACTTATCTCCAGAAATTTCAATGGTT--TTACTATTCCAAGGGTCGTTCCAAAGGCAAATGAGCAAGTTAGT--ATTTTTTCTTGCAGTGAACTTG------CCATCTTACCTGAAAGAACACTGTAGCCTAGAACCAATGCCACATGACCTTGTACA-GCCTGTGCAGTA-ACCATGGGAACTTTCTTGAGCATGCCTGGGAGGATAAGATGAATTTGAGTCTCTTAGACATAGAAGAA------TCAAAGGCATATTGTGAACCCTGAGAGGTAAACACCCTTAGCACAATATATTTTATGTTCAATGGTTATTGAATATC----------TTGGACAAAGACAATA--GGAAAGACAAAGATGAAGTCATTGGCTAACTCTCCTGGGGGATTGTCTTTCAAAGCTAGATATTATAAATCACAGTACAACTAACAAATCACCTTCCAGAAC--------ATAGAGGAACTC--TGTTACTACAGGCAAGAACATTTCTTATGGAACTG--TTGAAATCCTCATGGGAAACCCTGAGTGCTGAAGGG-------AGACTTGAACGTAAGCTGGAAGTGACCAGGTAGAAAAGCATGCAGAAGTGGAGGCTTCAGGAGGCTAGAGCAACATTTGCTGAGA--ACAGGGGAAGGGCTTACAGTTTC--TGTCCTGTTG--AGATTGTGTCAGGCTGACAATGAGATGAATGGGCAGGGAGCAGGCTCCTTCATGC-TTCTTTGGGTTTTAAACATTTGCTTCAGGAAATGAGGAAAGCTGGAAGAGTTTAAGTAGATGGATAGTGTCATTCGAATGACTCAAAAATAATAAACATTCTGAATGCAAATGGTAGAAGGGTTGA a score=39035.000000 s hg15.chr15_random 289796 424 + 366089 TGGGTCAGAGTGTGTTTCCTTGGTCATCTCCATGTTTACC-TCCCCACCACCACCTGT--GCTTAGACTCAACTGTGCAGAACTGGTAGAAAGATGAACTTATCCTCAGTGAGAAATCCCGGAGCTCACACCT--TAAAGCTG------CACTCTTGCCAAC-------CCCACACCTACCACCAGAACCTGGAGACCTTCCTTCAAGTGCAACAGTGATTTATTA-------CTCGAATGTTTACTGAAGATGCACACAGACAGGTTCTAAACGATGCTCCTGCTT---CGAGGCTATTCTTCCCAATAA--AAATGCAGGGTTTTCTCTTGACCTTCCTGAGTGATTGGATCAAAAGACATTTTAT-----ATCATTGCCAGAAAATCTGGATTCAAAAACTGTTGAGTGTGTGGGTTGGGGTCAGTGCCTTTC------CTTTCTTTTTTAAAAATTAtttt s mm3.chr7 83296996 426 - 134401573 TAGACCTGAGAATGCTTCCTTGCTTACTTC-------ATAGTCCCTATAGCTGCCTAGCCCCTTAGACTC-ACTATTCAGAACTGATAAATAGGCAAGCTTGCCTTTTATGAGGAGTCCTGGACCCTACACCTTGTACAGCTGGTTAAACAAACTTTTCAACAGGGAAGCTCAAATCTTCCAATTCTGCCTCAATAGTATCTTTA----GTAAAACTCCTTTATTAGCTCCTGTTTAAATA---ATTGACG----AGACAGACAGGT-----------CTCCTGCTTTTACAAGGTCATTTCTTCCCCCAAATAAGTCCATGCTTCTTCTTTTTGTTCTCTGTGCAACTGGA-------ACATTTTATTTTCTAACATTGCAAACCAATCTTGTTTC-AAAATTGTTGAGTATAGGAGTTGAGGTCAATGCCTCTT-TCTTCTTTTCCTCTTTCACTTTTTTCTT s rn2.chr1 167044923 432 - 276301343 CAGATCTGAGAATTCTTTCTTGCTCACGTCCATACCCATAATCCCTATATCTGTCTATCCCCTTAGACTC-GCTATTCAGAACTGATAAAAAGGCAAACTTGCCTTTTAGGAGGAGTCCCGGAGCCCACACCTTGTACAGCAGGTTAAACAAATATCTCAACAGGGAAGTTCAAATCTTCCAATACTGCCTGGATAGTCTCTTTA----GTAAAATTCATTTACTAGCACC--TTTAAAAA---AATGGCGATACAAACAGATAGGT-----------CTCATGTTTTTACAAGGTCATTTCTTTCCCTAA--AAGT--ATACTTTTCCCTTTTGTTCTCTGTGTAACTGGA-------ACATTTTATTTTCCATCATCGCAAACGAATTGTGTTTC-AAAACTGTTGGGTATATGAGTTGAAGTCAACATCtcttctctttctttctttctttctttctttctt a score=11734.000000 s hg15.chr15_random 290344 1316 + 366089 tcttaaaatgaaattttgtacctattaaatgcaaacatgctatccccaactcc------ttatcccctggcaaccaccattctattttctgtctccatgagactgagcactccagacacctcatgtaagtggaat--cacacagtgtctgttcttttgtgcctggcttatttcactcagcataa-tgtcctcgaggttcatccatgttctggcgtatagaagatgtc-cttcctttccgaggttgggtaatgtttcattatacacatggaccacattttgcttatccattcatccacacaaggacacctgggtgacttc-actttttggctattgtgaataacgccactatg-aacatggA--GTCCCCTGTATTTCTAATCATAGGTATTGGTCTTCGGTTTGGGGACTCATGAAATTCCACTCCTACTTCTCTGTTCTTCTACTGCTCCTCCACATCTTTGTTCTTACCATGAGTGGTATTTTGTTTCTAATAAATGAAAAAGTATGATAGATATGATACTTCATTTAATGAAATGATCAACACAAacctcgggcaaatcacttaatttcttcacaatgtggccttctcatctgtaaaacagtgatgtcattctttacctctttggcttatgaggaagataaaatgagaccatgtctgtaaagagcttagcacttagactgtcacgtagcatctgcccagcaagtTGAGGT-------TGGTACTTGGTTCCCCACAGTGGGGAGCAGGGATTGAGGCAGAACTCATTCATATGGGCATAGG-GAACAGATAGAGCCACAAGCTCAGAGCCAGAGGGACTGTGAGGGCAGGTGCACCCTTAAAG----ATCTTTAGGAGAAAAGATTTCCAGCCTTTGTCACTGGGCACTGGAGTTCCCTGATAAATTCAATTGGCAACCAGTAGGGTTTTCAGGG-TAGTAGTGCAAGACAGAACCCCCCAAGCCTGGTAAACAAGGGCTCACAATTCTTCAGCTCCTCTGGCCCTGTTACCCTTCCTGGGATG-------GTTTGAGTAACACAGCCCCAGAAGGGGAATCCACCCtgtgatgggctgaattgcatccccctcactttcatgttaaatc-ctaatccctaata-----------------------------cctcagagcatgatctcat-----------------------------------------ctggaggcag-------------gatttcaagtgaggtcattaggatggaccctaacccaatgactggtgtccttataaaaag-----ggaaattaataaggtcattagggtgggccttaatccaatatgacctggtgtccttataaaaaggggaaatttggacacagagatg------------------tacatacatacagggaagatgatctgaagagacagagg-----------gagaaggcagct s mm3.chr7 83300953 1353 - 134401573 ttttaagttgaaactctatactagtgaaatgataacgctctctattttgcttccctatctcagcccctagctactattatttcacttt--gtcttgatgaatttaattactttaggtacctcccataagtgaaaaaatatacagtacttgtcctgatgtggaaatcttatttcacagagcacaaatgttttcaatgtgcaggcagatttcaacctttgtcagatgtttcttcatctgtaagattgatcattatcccctcgtatatatag-ccacatttcgctcatccatttattcctcaatagatccttgaatggttcccacctctggagttttgtgaataatgttactGTACAACCAAGATCATCTTTTGCATTCTCCA-----------GGCCCTTAACCTGAAGATTTAAGA----------------------CCTTGTATT-----TTAATGTATCTGTTTTTGTCACAATCAGCATTATACTTATAATAAAGGAAAGAGAATACTAGATGTGATGCTTAA----------------ACACAAATACTTGGCAAACCATTTTATTTCTTTTCAACTTAGACTTTTCATCTACAATGTGAAAACATCACT------------GGATTATGAACATGAAAAAATTTCCTTATG---GGGAAGAGCTTAGAACCCAAATTCTCATATACTACCTACCCAGATAGCAGAGGTATCCCTTTATTGCTTGTAGTTACAAGGTGGGGAGAA-------ATGCAGAACTCACTCATCTTGACTAAGGAGGATATTTAAAGACTTGTTTTCACAGTAAGAGATACTT--AGAACAACTGCACACTTGAAGGTTCATTCCTA-------AGATTGTTGGCCTTAGCTCCTGAGTAGTAGCGACTCCTAATGAATTTCATTCACTGCTAGTACAATGTCCAGGGATACTATTCTG--------CTCACAAAAGCTACAAAAATGGAATACACAATTGGATTG-TACTTTGACTCTGGT--TCTTCATAGTCTGTGTTCATATTTCATTCATAC---TCCTAACTTTGAATCTGAGGTACTGTGTGCTGAATCATGTCTTTTT-ATTCATATATTATATCTCTCATCCTCAGTAGAAGTTAAAATGTGATAAGTAAGGTGATCCCTAATAGTATAGTTTCATGCTTTAATTAGCATACAGAGTATTAGGTTTCAGTAAGGCATTTTTAGACAAATTTGTTtttgttgattctctataagaacaagaaaatggaattaagtttgatgacta-tcaacagatgaaaagataatgaaaacctgaaacataggcagaatgggattttattca----gctctaaagaacat-tgaaatcgtgaaacttg--catggaaatgaatagatttgaaaatcatTgcatctttacaaaagaaaaggtt----gaaccaggagtacactatgaagagaagaaagct a score=11356.000000 s hg15.chr15_random 292078 765 + 366089 gct-----------------cagccatctacaagccaaggagagaggccaggaacagatctttccctcacagccctcagaagaaccaaccctgccaccaccttgattttggacttcctgcttccagaactgtgagaccatacatttctgttggtcaagcca-----------------cactcactat---acagtattttgttatgac-------agccccag--gaaactaatgcaCACCT-------------------------CTACAACCCT----------------TTCAGGGACAATGGAAGAT----------------GCTGGTGAGAGCCCCTCCAAGC----------------------------CAGTGGAACCCAAGGAAG------CAGAGTGAC-------TGACAAAA-------------------CAAACTTCTGGCCTTCAAG------------------------------------------------------------GACAATTATAAAGTC-------------------------------------TGTATAAGCTTCTAAAG------TGTGGCTACA----------TTGCATATTAGTAAATATCCTTTTTTTGGCCAAAGTATT---------------------------------------------------TTATTTTACTATTATACTA-------------TATGTAATTTGCAAATCGTT-------------------------TCACAAGAAATTTTTAAAGCAAAGTTATAAAAATGTATATAAAAAA-GTACAGAGTTGACAGGAAAATTACTTTTTT--TAATAGTTCAAATAAAATCTTTTTGTTTTTCTTATGCTGGCTGAAAATTGTATAATCTATTCTTCCATAGATAGTTGCAATATTACATTTTAATGAGCAGTCTCATAGTTAATTCA----TTTATTAAAAACAGGTTCACCCTTTGGATGATGAGAATCAATTGCTCGATTTTAAAGAGAACGATAATAAAATTTGTCATATACGACATGAAGTCAT-AAATAGCTCTTCAAAATTCAGATGTGTTC-AGCCTTGTTTCTCTATTAAATTCTT s mm3.chr7 83302306 1130 - 134401573 gatgagtgccagagaggatacagccatc-acaagatac----acaggtctggaacatgtcctcccctcaccactgcagaaaaaaacaaccttgttggca--ttgattatggagtttcaggccccaggactcggggttagtatatttctagtgattatgcaaactgtggggttttgctgtgctcaccctgggaagttaTTTTGTTGTGATGACACAAAGCCCCAGTTGAAAAAAACCTACAAATTGGCAGAACATAGCAAAGGAGAGTCCAACAAACTTAGTCTTCTGGGTAAAATTCAGGAATATGGACACATAGCACAGTTTTTGTCAGCTAGGGGATGTTCATGTAACTGTATATACCACATGCGCTTGGCATATCACAGGGGATACCAATAAGAATATTCCATAATAATCAGACAATGACAAAATTGCTTAAACACACATACCCCCACATCTGTCCCTGTAGTTGTATAACACTACTTGGCACATCACAGTGTATAACTGTAAGTATATTCCATAATAATCAGGCAATGACAAAACTGCTTAAACACACATATCCCCACATCTGTCTCTGTAGTTGTATAACCCTACTTAGCATCTCTGTACCTACAGAGTTCTGGTTGGCGTCTGAGCAACTATTCTTCTTTTA-TGAAAGTATTATTAAGCTAATTGTATAGTAGGTAAACATTTTCATAAGAAGTTTAGTAATTTTGTGGTACTGGTGTATTCAGCCGGGGCCTTTTATATGCTGTGCAAATACTCCGAAACTCAGCTGCATACTCAGCCCTCATAAGACATTTTAAAAGCAAACTTATAAAAAGATTTTAATAAAATGTCCAGCACTGACAGCAAAGTTATTTTTTTCTTTACAGCAGAAATAAAAACATGTTATTTTTCACATAATAGCTAGAATTTTTATAATATATTATTCCATTGATAGCTGCAATATTACACTTTAACGAGTAGACTCACAGTTAATTCAATCATTTGTTAAGAACAGATTCACCATTTCAGCTATGAGAATCAATTGCTCAACTTGAAGGAGAATGCTAATAAAATTTGTCATATATAACATGAAGTCATAAAAAAGTTCCTCATAATGT-GATGCTTTCTAGCCTCGTCTCTTTATTAAATTTCT a score=19027.000000 s hg15.chr15_random 292918 111 + 366089 CCAGAAGTTGTGGC-TGTGAGGCATTTTATGGCAGCAGCTGGTCTGATGACAGTGGCTGCTCCCTGGCTATGCTTTTCAACCCCCATAATCACAGAGAGG-------------CATTTTGCTTAA s mm3.chr5 84867761 122 - 149719773 CCTGAAGCTGTGGCTTGTGAGGTATTTAATG---ACAGCTGGTTTGATGCGAGCAACTCCTCCCTGGCTGTGATTTCCTCTCCCAGTAATCACCGACAGATACGGCTTGCCACCACTCTGTTTAA s rn2.chr14 43066616 122 + 107821284 CCTGAAGCTGTGGCTTGTGAGGTATTTAATG---ACAGCTGGTTTGATTCGAGCAACTCCTCCCTGGCTGTGGTTTCCTCTCCCAGTAATCACTGAAAGATAGGGCTTACCGCCACTCTGCTTAA a score=21173.000000 s hg15.chr15_random 293029 101 + 366089 ATCTTCAGGTTTTTGCTGTAGCATTGTCATAAAATATTCTCTAGCTTTGTCCACATGCAGCCCATGGAGGTCTGAGACATTTGGTGACAACAGGGAGGCGT s mm3.chr5 84871179 101 - 149719773 ACCTTCTGTTTTCTGCTGTAGAACTGCTGTCAAATGTTCTATAGCTTCATCCACATGCAGCCCATGGAGGTCTAAGACGTTCTGCGGTAGCAGAGAGGCGT s rn2.chr14 43071066 101 + 107821284 ACCTTCCGTTTTCTGCTGTAGAACTGCTGTCAAGTGTTCTATAGCTTCATCCACATGCAGCCCGTGGAGGTCTAAGACGTTCTGTGGTAGCAGGGAGGCAT a score=20508.000000 s hg15.chr15_random 293572 135 + 366089 CCTTTTCTCTTTAGCCTTCCATTCAGCAG---AAGTGACATTTGCATTTTCATGAA-AAACTCCTGTGCTATAACTTTTTGTAAACGATTCCTTTCAAGAACACAGTTTTAAAATTGCACTGTATGTTCTAAGAAATAA s mm3.chr5 84875860 136 - 149719773 CTTTTTCTCTTTTGATTTCTGTGCAGTAT---AAGTGTTATTCTCATTTTGGTGAACACACTCTTGAGCTACAACTGTTTTCACAGGGTCTCCTTCAAGCACACAGTTTAGAAACTGTACAGTGTTTTCCAGTGAGTAG s rn2.chr14 43080046 139 + 107821284 CTTCTTCTCTTTTGACTTCTGAGCAGAATGAGAAGTGTTACTCTCATTTTGGTGGGCACACTCTTGAGCTATAACTGTCTTCACAGGGTCTCCTTCAAGGACACAGTTTAGAAACTGCACGGTGTTTTCCAGTGAATAG a score=22777.000000 s hg15.chr15_random 293707 119 + 366089 CTGTGGTCCTTGAAAGTGTACACCTCCAAATTTTGGTTAATGGCGAGGAGTAACTTGGAGAGCTGCTGCTTCTTCAGTCTGATGACACATTCTATTACAAAGATAAGTGACTTCCTTCT s mm3.chr5 84878259 119 - 149719773 CTGTGATCTTTGAAAATGTCCACCAGGAAATTTTGATTAATGGCTGGAAATATTTTAAAGAGCTGCTTTTCCTTTAGTTTTGTGGCACAGTCTTTTTCAAACATAAGTGTCTCCCTTTT s rn2.chr14 43082560 119 + 107821284 TTGTGATCTTTGAAAATGTCCGCCAGGAAATTTTGATTAATAGCTGGAAATATTTTAAAGAGCTGCTTCTCCTTTAGTTTTGTGGCACAGTCTTTTTCAAACATAAGTGTCTCCCTTTT a score=980.000000 s hg15.chr15_random 293826 60 + 366089 TAAGTCGTGATTTTTC----------CTGTAAGGCAATTTCTTCTGTTAGCTATTTCTGTGAGTGACACt s mm3.chr7 83303659 68 - 134401573 CAAAT-GTGTTTTTTTTTCTCTCTCTCTCTAAGGTAATTTGTTTTGATA-TTGCTTCTGCTCCTGATGCT a score=8497.000000 s hg15.chr15_random 294186 714 + 366089 GTGAGTGACACTTTTAAAAACTTGACTATTCCGATGATCCAATTAGACAGAGTAACACTTCGGGTGCTGCTAAAGTCTGCAGTAATTTCTTGTTCTCTG-------AGATGAATTTTGTTCAGTATGATCAAGTCCAACATGCCCAACCAGGGGAGGGCCTCCCGT-----AAGCTTGCCATAGGACACAGCTTGTTTTTGTTACTTCTAAACACATGTGCAGGACAAGAGATTGGCAAAGGACGGGtatattagtaaatatatttata---------------------------------------ttattttttCTAGAAATCATTTCGCCTTTTAGAATTGTGACAAAATCATTCTTATTAAATGTAAGTCAACAAATAAAGCTGGATAAATAAAATTGTA--AAGTGTGACTCCACTCACCATG-----GTGGAGCTCCAGGACACCTATGCGATCCCTCCACTTAAGAGA--------ATTCGGCTGCTGCTTTAAAA-------------------------------------------------------------AATAAAA---ACTGTTTTTAAAACTCAAT----------------------CAATCAGCATTGCATTATTTAACTGAGAGAGTAAAAATCTCACTGTTTCGAGGTTTTTCCCCTCAGAAAC-AATCATTCA-CAT-TAAGTTTCATCACTAATGGTATAATTTGCCTAATCTG------ATATTAATCTAAAAACTTAGAGGAAAACAAAATCAGCAACGTGTTAACTGGTGAA--AGTTCTCTCTCAAAATCAAAATTCAATAGAATTATTTCATGTAACATGGT------------------------------------TTATTTTGTTATAGAAAGTAAAGGTG s mm3.chr7 83303727 861 - 134401573 TT---TCACACTC---GATACCTGGC------------------------AATGGTATTCCAGGTACTGGTAAATTCTTCAGTAGTCTCATTCTCTCTGTCATGTCAGTTAATTTGGGTTTAGCATCGTCAAAACCATCAAGCTCAAC--------AGCTTCCCTTTACTTAAACTCTTTATAGGATGATTCTTGTTTTCATAACTTCTCAGCACAAATGCAGGATGGGAGACCGTAAAAAGATTGCTGTACTTGTAAAAACATACACACACTGCCACCACCACCACCAGCTCCAACTCCCCACCACCTTTGCTTTGCTAGAAATTATTTCTTCTCATCTAATTGTGGGGAAATCATTCTTCACAGATCTAAGT----AAACACGGTCAGATAAATGAAACTGTATGCAATATGGCCGCCAGCAGTATGGTACTGTGTGGCTAC-GGCCCTGCCTGCAATCTCTCCCCCTTACAGATATATATGCTTTTTCTGCTGCTCTAAAACAAATCTGCAGGCATTGTGTGTGCCATCAAAGTATATTACACATATACATTAAAACATTATAATGAAACTCATTGTAGTTAAAATGTGATAATTAAGACACATTTGGAAGTGTAATCAGCGTTACACTCTTTAATTGAAAAATAACATAACTTAATGTAT-----TTACTTCTTCCAAAATCAAATCATTAATCATGTGAGTTCTATCATTAGTGACCTAATTCAACTAATTGGGCCAACGTAATAGCCTGGAA----AGAGGAAGGCAGATTCAGTGCTTTCTTAGCTGGGGAGTTACTTCTCCCTTAAAACCAGATGTCAGCAGAACTCACTTATACCACGTGGTTGTAAAACATTAGGGAAACCGGGAGCACAGAAAGGATTATTTACAAAAAGAAGTTTAAAGTA a score=131.000000 s hg15.chr15_random 294900 33 + 366089 ACAAAAGTAAAGGTGACAAAATGAGCACAAAGG s mm3.chr7 83304732 33 - 134401573 cCgaagaagaagaaggaagaggaagagaaagag a score=20232.000000 s hg15.chr15_random 294933 110 + 366089 -GAGTTCTTCATAAAAAGAA---ACCTGCCAAGA---ATTCTTGCAATTTCTCATAAGTCACTTTTGTCAGGTTCAAATCTACATGAACTAGACTATCCTCAACTGTTAGAGACCCT s mm3.chr5 84883861 116 - 149719773 -GGGGTCTTCATATGAGGAAGGTACCAACCATTACAGATTCTCTCCATTTCTCATGAATCACTTTAGCCAGATTCAGATCTATATGAACCACACAGTCCTCGACTGTTAGAGACCCT s rn2.chr14 43088445 117 + 107821284 AGGGGCCTTCATCCAAGGAAGTTACCAACCATTACAGATTCTCTCCACTTCTCATGAATCACTTTAGCCAGATTCAGGTCTATGTGAACCACACAATCCTCAACTGTTAGAGACCCT a score=303.000000 s hg15.chr15_random 295043 25 + 366089 AAAATCCATTCCAACATGGCCAAAT s mm3.chr7 83304867 23 - 134401573 --AGTCAGCACAAACAGGAATAGAT a score=35126.000000 s hg15.chr15_random 296283 207 + 366089 AATTCATTGATCTGGAAAGCCAGTTCAGCAGGTGTTGGCACCTCCAGACAGTGGATGGTAAGAGATTTGATCATCCCTGGCATGGCAGTCAACATATCAGCCTAATAATTGTCACTGACTCTGGCTGACAAAGTACCGCATGATATTAGAATTTTCTCCATTTCCTGTTCATCGTCATTCATAAATTCTTCTGTGTTTATCTAAAAT s mm3.chr5 84884612 204 - 149719773 AGCTCATTAAGTTGGAAAGCCAGCTCAGGGGGTAACGCCAGCTCCAGACAGTCTATGGTCAGAGATGTGGCTGTCACTGGCGTGGGAGTCAATACCTCAGCTTTACCCTCTTCACTAACTCCTGCTGACCAACCACTTCCTGGCATTAGATTTTTCTCCATTTCCTGTTTATCTTCATTGATAAATTCTTCCATGTTTGC---AAAT s rn2.chr14 43089218 204 + 107821284 AGCTCGTTAAGCTGGAAGGCCAGCTCAGGGGGTAAGGTCAGCTCCAGACAGTCTATGGTCAGAGACTTGGCTGCCACTGGTGCAGGAGTTGATACCTCAGGTTTACTCTCTTCACTAACTCCTGCTGACCACCCAGTTCCTGGCATTAGACTTTTCTCCATTTCCTGTTTATCTTCATTAATAAATTCTTCCATGTTTGC---AAAT a score=295.000000 s hg15.chr15_random 296490 10 + 366089 TTCACATAAT s mm3.chr7 83305074 10 - 134401573 TAAACATACT a score=7900.000000 s hg15.chr15_random 296903 36 + 366089 TTCACATAATCCTTTGGAAATCTTTCATTTTTTTCt-------------- s mm3.chr5 84884816 50 - 149719773 TTCACATAATCCTTAGGAAGATTTTCATTTTTCTTTACTTCCAAAGAGCC s rn2.chr14 43089422 50 + 107821284 TTCACATAATCCTTAGGAAGATTTTCATTTTTCTTTACTTCCAAAGAGCC a score=32935.000000 s hg15.chr15_random 297061 299 + 366089 AACACAATTAATTTCCTCATTTAATTCAAGATGTGAAGAGCTCAACACAGAGTTCAAAATATCACACAGATTCAAAGAAGAATGTATACTGTGTCCAATGTCTGCAGCTACTGGGTTCTTCTCCATTCCATTCATGTCTTTAGGGGTTGTAGCGTTTAGA-TACCTAGAAAAGACTACTTGATGCTATGTAAGCCTAAAAGTTCTGCCTAACTATTAGGGAGCAGTTCGTTAGTATTCTTTGGGTCTACAACAGCATCAGGAAATACACTTGCTATTAATTCAGTTTTTTTTGTTGTTGt s mm3.chr5 84884866 273 - 149719773 AGTAAGATAAACATCTTCATTTAATTCAGGATTTGAAGTGCTTGTTGCAGAGTTTATAATATCAGATAAATTTAGAAATGAATGCATATTGTCTCTAGTCTCTGTCATTACTAGATTTTTTTCTATCTCACTAACATCTTTAGGGATATAAGATCGTGGAGTAAGTGAAAGAGGCTGCTTAAAGGTGTACGCGCCTGGCAGTTCAGCCTGACGGTCAGGCAGTGTCTCATTATTACTCTTGACCTTTACAGCAGCATTGGGGAATACTC---------------------------TAGT s rn2.chr14 43089472 258 + 107821284 AGTAAGATAAACATCTTCATTTAATTCGGGATTTGAAGTACTCGTTGCCGAGTTAATAATATCAGATAAATTTAGAAAAGAATGAATATTGTCTCTAGTCTCTGTCA---CTAGACTTTTTTCTATTTCACTAACATCCTTAGGGACATAAGACCGTGGAGTAAGTGAAAGGGGCTGCTTAAAGGTGTACGCACCTGACAA------------GTCAGGCGCCATCCCATTACTACTCTTTACATTTACAGTGGCATTAGGGAATATTC---------------------------TGGC a score=13899.000000 s hg15.chr15_random 297661 86 + 366089 TATTAATTCAGTTTTTTCAGAAGTTACAGCTTTTATTTCTGCTTGTTCTGAGCTTTCCCTTTCTGCATCTTTGGTAGGCTCTGCAC s mm3.chr5 84885139 86 - 149719773 TATTAATTCAGGGTTTTCAGGATTCATAGCTCTTCTCCCTTCCTGCTCTGAGGTCCCCTTTCCTGGGTTACCAGCAGACCGTGCAC s rn2.chr14 43089730 86 + 107821284 TACTGATTCAGGGTTTTCAGGGTTTATAGCTCTTATCCCTTCCTGCTCGGAGTTCCCCTTTTCTGGGTCACCGTCAGACTGTGCAC a score=28136.000000 s hg15.chr15_random 297761 194 + 366089 CATTCAAAACTGAATGTGAAGTTAAGGGATGTAAAGTGAATACAGGA--AAAATTTCCTAAATTTTTATTATTCAAATTTGCATTTTGTGTAGAAATACATATAATACTTATAAACTCACTTGAG-------TCACAAAG-------------------TATTAACATCTCGTTAAGGC-AAAATGAATCTATTTGGTCCTCGGGAAGAAAGTTCAATTTCTT s mm3.chr5 84903581 217 - 149719773 CATTCAAAACTGAATGTGAAGTTGGTGGGTTTGAACCTGGTAAAGAAGCAGAACTCTTGAGAGTTTCGCTGTTTGAGCTCGTGCTCTGTACAGAAAGA---AGAGAAGTCATG---CCACTTGAATCTGAGTTCATAAAGGTGGAAGGGTCGTTAAAACTATTAGCATCTTGCAGAGGTGAGAATGGGTATACTTGGTCATCAGGAGGAGAGTTTAATTTCTC s rn2.chr14 43106108 217 + 107821284 CATTCAAAACTGAGTGTGAAGTCAGTGGGTTTGAGCCTAGTAAAGCAGCAGAACTCTTGACAATTTCACTGTTTGAGCCCGTGTTTTGTACAGAAGGA---AGAGAAGTCATA---CCACTTGAATCTGAATTCACAAAGGTGGAAGGGTCATTAAAACTATTAGCATCTTGCAGAGGGGAGAATGGGTATACTTGGTCATCAGGAGGAGAGTTCAATTTCTC a score=8320.000000 s hg15.chr15_random 298274 559 + 366089 AGGA--AGTTCAATTTCTTAAAAGCATTCTCGGTTAAGGAATCCAAATCTTCGATTCGCTACATGTCCAAAAGTGAATCCATGTTTGAAGCTTCACTCCCTTCTTAAGAAAGCCACTTTTCCATGATCTCACTTCCTGATGCACTCTCCTGACTCTCAGAA-CCAATTCATCTGCCCGAGAAGATTCTTATTTCAGATAATCTTAATAGACAATCTACTGCATTT-CAACTGAGaggattgctgtgcggactaaacgagataatccctaaaagcctgctgtgtaagaagactggcacttagtaagcacccaaCTACGTTCCCTTTGAAGTCACATTCGGAGCGCATCCAGTACACAACATCCAGTCCAGGTAGAAAACGTCTCTGAGACACTGGGGAAAAGCTCTTTCTGATCTATTTTTGTCTCTTCcatactttttctttcagaaggaagatactgtcaatatgacatttca---ccactaaaaaatgtccattatatatctccttaaaatggaaatatcctgctataaaatgacacccccataatcaaagcg-aagaaaattaa s mm3.chr7 83305838 468 - 134401573 GAGATGAGTTCAATTTATTAAATGCATTCTGTATCAA---------------------------ATCCAGAAATGAGTTAATTGTGAAGTCCTCACATTCTTCCCAAGAAAGATAGTTTTCTAT---------------TACACTTTCTTGATTGTCAGAAGCTGATTCAGCTCCATGGTGTGATTCTT-CTTCAGGTAACCTTAAAAGAGGTTCTGCTGCATTTACAACATTTTGAGCTGTTGTTAGGGTTAAATGAAAAGGACCTTATATAC---------------AATGGCACTCAGT-----------TTTGTT-CCTTTGCAATGCTATTCAGAAAGCATCAAATATACCAC--------------GGACATG---CAGAGGCTTTGCTGTAGAATTCTTCCTGGTCCATTTCTGTCCCTTTCATCCTT----TTGGAGAATGAATACTATGGCAG-ATAACATGTAACTTCCTCTTTAAGATGTTC-CCACATACCTTCCTCAAATAGCATTCTTCT------AAAGACCAGCCCCATGATGAAAAAATAAGAAAATGAA a score=12715.000000 s hg15.chr15_random 306737 508 + 366089 GTCAAGCAAGTGACACCTGTGACCACCTCCAGCAGCAGAGTCCCACTAAACAGTGGAGAACAGAAAGCATAACAATGCCTGCCTCCAGGAGCAGTAATCCCAAGACGTCAACCCACCACATGATTTTCAGG---------------CACGACTCATGCAGGCACTGGATGGAACAACGCTTTATGCACATAGAGAAGACACAGAGCAAGAGCAGCTTCAGTTTCGACTGT-TGATCCCTCATGGCCAGTGGGTCTCACCCCACAGCCAGCACAGGGAGATGTTCCACACAC------TCATGCTATAGACAAAGGCCCCTGTTCCC--------------------AGCAGTGGGGTCGTTCAGGTGCCATATGATGCACATGCTTTAGTAGAACGAAGAAGTACGCCTCCAGTCCAGAACAGAGAAAGAG-GTTCCCCATAAAGGGTAATGGACAGCGCAGGCT--GTGAAAGCTCTTTATCTCTTTGTAAGAAAATGTTCCTAACCCAAGGCACACTCCTATGCAACTGTACAGAGGTCAAAAGACTACGT s mm3.chr9 65921261 541 - 124467299 GTCAGACGGATGACTTCTGTT-CCGCCTCCCG-GGAGGAGTCTCATTGTGTGGAAGATGGTAAATGGTACAACAAAGCCTGCTGCCAGGAGCAGCAGGCTCAGGGTATCAACCCACTCCGCGGCTGGCAGGTGTCGCCAAGAAACACACAAGTCACCCAA-CACCAGATGGAATCACGCTTTAGTCACATAGATGAGAGG--GAATAAGAGCAACTTCAACAGTGGGTGTCTGCCCCCCTATAACCAG-AGGTCTCAGTCTGCCACCAACACGGGATGATGACCTTCACATGGCCTTCTGTGCCATAGGTAAAGGCCCTCGCTCTCTCTCCACCTGGAAGAGATCTAGCAGGGAGGCTGGCCAGGAGCCATATGACGCACAAGCTTAAGCAGAACAAAGGAGCGCTCTTGGAGCCTGGAATGGGGAAAAGGTGGTTGCAGCAAAGTGATGTGCCCCACAAAAGCTTAGTGTAA---CCTTTTCTCTTGGGAGAAAAGGGGTTTAGTCCCAAGCCACTTTCCTAAG--GCTGTGCAAGAGTCAAAAG-CTACAT a score=2387.000000 s hg15.chr15_random 307245 21 + 366089 TTGTGTGACTGCTTCTCTCAA s mm3.chr1 78357818 21 + 195869683 ACATGTGACTTTGGTCCTCAA s rn2.chr9 41349950 21 - 118059026 ACACATGACTTCCGTCCTCAA a score=50728.000000 s hg15.chr15_random 309221 445 + 366089 AGAGCAAGCCCAGGAGACTTGGGATTAAGGAATAGGAGTGTAAGAGTTAAAACGTCATAAATGTGAAAGTCA-GGTACAGCTCCGGAAACTAGCA---GAAGGGAAGCACAGGGAAAAATATTTCCTCATCTCAGATAAAAGGGAGACAAGAGAGACTGTCAAATTGGTGCAACCAGAAAAATATGCTCACACAACTCATAAAAAGTTTTAAAGGCAAAAGAAGTAAAAATCAGACCATAACTAAGAAAAATTGAGAGGGAGTGGAAAGAGAGAAGAGGCAAGGAATAATAGAAAGTATCTAAATCAAGAAATGAGGGATAGAAGATCCTCCAGAGGAACAGAAGAAGAAACAGAAACAAGAGCTGGCTTTGAGCAGGCATCCCAGATGTTGGTTTGACATGGGGCAGACTTTTGTTTTCATTTCTTTG------------TTTAGTTTTTGTGTGCAAAT s mm3.chr7 83316100 434 - 134401573 AGAGCAAACACGGAAGACTCCAGCTTAAGGCACAGGAGAGAGATTGTTCAAACATGGTAAATATAAAAGCTGTGTTTTAGCTTCAGCAATTAGAAATTGAAGGAAAGGGTAGAGACATGAATTTCTTTCTCTCATATAA----GAGAAATGAGAGCCTGTCCAATTGATGCA-------ACAGGGGTTCACAGAACCTGTATATGTGTTATAAATC---AGAAGTTAAACTCAAA--GAAATTTTGAAAAATTGTGAGATATTGGAAGAAGAAAAGTG---AGATGTAATAGAACCTGTCTAAATCAAGAAATAAGAGACAGAAAGG--TCTAGAAGGAAATGAGAATCACCCGG---AAAGGGTGTTTCCCCACAAG--TCTCACAAGCCCAGAGGACAAGCTGCTGA-TTTTGGTTTCATTTCTTTGTTTGTGCTATGCTTTAATTTTTGTGTCTAAAT s rn2.chr1 167081117 438 - 276301343 ATAGCAAACATGGGAGACTCCAGTTTAAGGCACAGGAGAGATACTGTTCAAACATGGTAAATATAAAAGCTGTGTTTTAGCTTCAGCAATTAGAAATAGAAGGGTAGGGTAAAGATACAGCTTTCTTTCTCTCATGTAA----GAGAAATGAGAGTATGTCCAATTGATGCAGTCAGAAACACGGGTTCACAGAACCCATAAAAATGTTATAAATC---AGAAGCTAAACTCAAA---AAATTTTGAAAAATTGTGAGAGATTAGAAGAAGGAACGTG---AGGTGTAATAGAACCTGTCTAAATCAAGAAACAAGAAACAGC------TCCAAAGGGAGATGAGAATCACCTGG---TAAGGTTGTCTTCCTGTAGGAATCCCACAAGCCCAGAGGACAAGCTGCTCA-TCTTGGTTTCATTTCTTTCTTTGTGATATGCTTTAATTTTTGCATCTAAAT a score=14577.000000 s hg15.chr15_random 313483 863 + 366089 GGATTGCTAACAACTTTGGCAGTGGAAAGGGGA------TGTTGC-------AGGCTGAGTCTGTCCATCTTCCTAGTGA------------TGTCCTGTCACATCCTCCATATGGGCAACAAAAACTGTTTTCAGGGACATATCAGAGGAGCTGTTTCCAATTTTGTGAAAATTACCTTTGAGATTCCAATCTGAGCTGGGAAATCATTTGACAAACATCAGTGGGGATGGATGTGCCAGCACTTCAATGACAAAATCAGATGGATCCCTGGGGCCAAAATATAAGCAGCAACCAGGACTGGCCCTGGGCCCCCTGTTGTCCTGTGTGGATGCTGGGTTGCCATAATCAACAACATAGTGGCCACACTTTAGAAAACTACTGGAATGAAATGATGAAGGGAATGAATGGGCTGGGAGGCAGTGTAGACCTTCACTATGGAAATTCAGGCAGATCTTCCAATTATAGGCAGGCTTGGTGCCTGTTCTCATGCAGAGCACGCTGCAAGCAGAGACTCCGAATACAGTCATTGAAACAGCTCTGGAGACACAAGCATAAAGCAGAAAAAAA--CTGATTTGAGTGTCATGTGCAGACAGAGGTGAGGTTTAGGCCACAAGAGAGAATAAGCTCTCCGAGAGAAAGAGAG-GCAGAACCTTGCAAAGTATACCTGTGACCTTGTAGAATAGTACTAGGGCAAACCTCCCAGGTTGCTGAACACTGAACCGTTAGTGAGGAAATAAATGTTTTTCAAGAATCACAGTGGAAGTGAGGCTGAAGGCCCACA-TTTCATTAGACAGAAGAGCACACTCCTCCCGTGCCCCTATGAAATGTAATGTCTGATGAAGCCCAGCAAGAATTTTACTGACCCTTTGGGGCTTTGCAATTTGGC s mm3.chr7 83320042 727 - 134401573 GGGTTGCCAATAACTATGACAATAGGGAAGGGACCTGCATGTTGACCTCACAAGGTTACAGCTCTTTGTCTTTCTACAGGCTTGTACTTATGTATCCTGTCACATCCCCCATGTGGGTAA----------TTTCCAGAACATGCCACAAAATTTGTTTCTAATTTGTAGAAAAGTGCCATAGAGGTGCAACTCTGATCTCCGAGG-----------ATATTAGTAGTGAC---------------------------CCAGGTAGA-------------AATTT----------CTGGAGTGGCCACAG-CCCCCTTTTGTATTG----GACACTGGACTGCCATAGTGAACACTATCC---CTCCATTTTGGAGAAGTGCTGGAACATAACAACGATAG-----AATGAGCTGTGTGGCTGGGTAGGCTTACCCAGTGAATATGGAAACAGA----------ATCGAAA-------TGGCTGATTCCATAGGGAATATACTGCAA----AGATTCCCAACACAGTAATTGAAATGGCTTAGAAAAGATTAGCACAAAGCAGAAAAAAAGTTTGATTTGAGGGTCATATGCA--CAGACAAGAGGTTTAAGCTATAAGATG--ATAAACTTTCAGCAAGAGAGAAAATATGGAACCTTGTAACATATACCTGTGACTTTGTATAAAATCAGAATGGCTAACTTCTCAGATTGCTAGACTCAGAGCTATGAGTGAAAAA----------------------------------GCCAAAGGTTAATGTTTTTGTTA-----CAGAGAACATTCCTC---TGCCCCTCT---CTCTAAAGGGTGATA---------GACAACTTTTCTGAGCCTTT--GGTCATGTATCTTGGC a score=136842.000000 s hg15.chr15_random 314346 1618 + 366089 TGAAACAGGTTGTGAAGTCAGCAGCCATTTTCTTCAGCCTTCACAACCTGAAAATCTTTCACTCAATCCAGAAAGGATAGGAATGAGAGGGTGAGGATTTGTGAG------CGAGCTTCTCAATCATAGC-------AAGTTAACCAGATTCGAAATGGAGGAACGTGAGTCTCTCACGCACCAGTCTTAGGTACAGATTTTGCATCTGGCTTTTCAACAACTG-TGCAGAACTTCAGAGGTCCCTTCTCTCTTCTGTAAGCCACGGGTCTTCCAGCACCAGCTGACCAAGAGCCACTGAATTTTTATATTTCTGATATCTCATTTTTGATAAATTTTTTGCCTTTGGAGGGTTATTTATGTGTTTATTATTTCTACGGTGACAAAAGTG--ATGAAGGATCTT---ATGGGATTTTAAAAGAATGCCCTTTGGAGGCTATTTTGATTACCAAAAAGATTGAACAGGAGAATGGGCTGTTTAAGAAAAGCCCAAAAGTTCTCATGGTAACTAGAGCTGTTATTGACAGAAGGG-----GATTGGAGATGGAGGTATCTCTGCCCAAATTAACCCATTAACATATCAAATCCTTTAAAAGAAAAAAAAAGTCCTACATGATTCAATATTTGAGAATATT----TTCTCATACAGATGGTATAGGAGGGTTCGGGTAAAATAAACAGAACAACAGCGAAGCCCCAGGAACCCGGACCTCATGGCGAAATTCACACCCTTTTTGAGTTTTTGTCCATTCTGCAGCTCTGAGGGCCCCCCCACCTCCACGCGCCTCTGTCAGGTTAGAAAGCAGAAGGGTCTTCCAAGGCCAGGGCTTGGCTGGACTTCAGCTGTGCGGGGATGCGGAGCTGCAGGAGAGGGGCGCCCTCTGGTGGCCGCTACGGGCTGTGCTGAGGCCGAGTGGAT-GGGAAATGGGCAAAGGGGCCTAGAAAACCC--------TTCCTGCAGACTCGCGGAAGGAGGAAAGTAGGGAGGCATGATGAGAGCGCTCATGAGAGATGAGTGGTAACCACAGCTG----TGGCCAAGCCGCTTTTTT---------------ACAA-GACTGAGATTCCCCCAGGGCCTCGGGTCACCCTGGCTTTCCTCAAGACACCCCCGACCCAGCCCTACTCCCTGAGGTCC------TGAAGGGACCTCTGGGGTCCTGGTTGGTACGGATTCTGCTTGATTCGTGTCGG----------GGTTGATG-----------------------------------------------CTTGTCCCA--------TGTG----------GTGGTTAAGGATTTGGGACGTGAATCCCTGGGGAAGTTGGTGTTTG--GGACAGATTG--GAAGAGGTGAAGAAGGAAGGAGAGGAACTGTTACACTCAGAAAGGGAGGCAGACAGAGTAGTAAAAAGAACCGGGCGCTCCCAGGCTGAG----CTGAG-ACCTGGCCTCTGTGTGTGGCGCTGGC-------TATGCTCCCA--------GCGAGGATGGAGA-GCCTGCCCTTGGCACTCTCTGGACACTTCCAAGGGGGGACGCGTCCATCCATC-------CCGCGTGTCTGTGTTACGGTCCACATGGTGGG-GCATACCTGGACA------------CCTCTACACGATCTGGCAC---ATATGTCATCA-----AACTCCTTAGGATGGATTCTGAGCCT-CCTCCAGGTA-GCTCCTGGGGAGACGGGAGTCCCTGCCTCAGCAGCGCCAGGCGGCACAGGTGCGGGAAGATCTGGACACACTGGG s mm3.chr7 83320769 1666 - 134401573 TGGTTTATCTTAAGAATCCAGCAGCAAATTTCCTCAGCCTTTGCCAACTCTGACCCTTTGACTTATTGTGAGAAGGACGTTA-------GGTGAGGACCAATGAGTTTATACTAAATTTTCTAGATTAGCCCATGAGAAGTTAACCTAATTAGGCCTGATGGAAGAAGGGAC-ATAAAATACCACGTTTAGTCATAGAATTCACAGTCTTTCTCTTAAAAACTAGTTTCTGACTGCATGTGCTCTTTC-------CATTTGTCACTGAACTTTCAATACCAATTAACCAAATTCTAATTTATTTTTGTAACCCTA--GCCACATTTTCCATAAGTTTTAGGTCTGATGAAGGTTATTGATACATTCAATTTTCTTGGGAAAGTAAAAA----ATAAAAGAGTTTGGAGCAGGATTTTTAAAGAATGCTATTTGGAAGATATTTTGGTTATCAAACACATCAACAAGGAGAACTTATGACTGAACAAAGAAACCATAGCTC-CATGCTGACTAGAGGTCCTGCTGGATCCAAGAAAGGAGACTATAGATGAAGAGGGTTCTATTCAAGTTAGTCCACAAGCACATACAATCCTTTATGAGAGGAAACCATGCATATA-----ACAGATCTGAGTTTATTTT--TTTTCCAGCAGAAGGTAAAAAA---TTCAAGTAGAAA----ACATCAACTGAGAGAATGAAGGAACC-----------ATTAAATTCA-GTCCTGGTGCGATGTTTCACCGTTAT----------GAGTTTCTCTATCTATTCA---CTTTGCTA-GCTAGAGAATATGGGTGGACCCTAAGAACAAAA---GGCTG--CTCCAG--------------GGAGCTGTGATGGGAAGGTGACTTCTGGTAGCGGGCACAGTTGCTCTTGATGTTGAGAGAACAGAGAAATTGACAAAGGAACTTAGAAACTTC---TTATCTTTTTCTGAACT----------GGAAGAAAAGAAGTCATGTTATGAGCCC--------------AGGGAAACATAGCTGCCTTTGGC--AGCTTCTTCTTTGCTTAAACATTTGCCACAATGACTGAGCTTCCTGAGGGCCC-------ACCT--GTTTTCATTTTGAGTCCACCTCTTCTGCCATCTT--CTGATGTTCTGAGTATGAAGGGCTCCTAGAGGACTTGGTTAATGCTATTTCTCTGTGATTATTGTTGATCGTATATATGACTGATGATAACAGCAGGAAAGAAGTTTCCTGAAACTACTGACCTTGGGCTGTCATTGGCTCAGCCAGCTTTATGCTCATCAAGAATTGTTGAAGGCTTGGAACATCAATCTTTGAGAC------TGCTTGGAGGACAGTTTGGAGAGGAAGTGGGAAAAGAATGATGGGGACTTTTGCCTTCCCCAAATCATGAAGA-ACAGAAGTAAAAA--------CACTTGCTGATTGTGTCC-TTGGGAACTTGGTGCCTTTATGTGAACCTAGCCTGAATTTACACCTGCAGAGAGC--AGGAGAATGGAGATGTTTTTCCTTGACTGTCTCTAGACATTTATCCTTGGGGACTTATCCACTTGTCTGCATTTCTGCATTTTAATGTTACAGTCCACATAGTAGGTATTTACCCAAGGATCTCTCTCTCTCTCTCTCTATTACTTGGTACTGGTTAGGTTCTCATTTTTTATTATATAGAGTAAATTATAAGATTATTTCCAAATATTTTCCTGGGGCAATGAGAGTTGCTG-CTAAATAGCA--GGGCAACACAG---TAGATAGACCTAGATGCACCTGG s rn2.chr1 167084169 1666 - 276301343 TGGTTTAGCTTAAGAACCCAGCAGCAACTTTCCTCAGTCTTTGCAAACTCTATCCTTTTGACTGATGGTGGGAAGGACCTTA-------GGTGAACACCAATGAGTGTGACCTAAATTTTCTGTATTAGCCTAGGACAAGTTAACCCAATTAGACATGGTAGAAGAAGGGAC-ATAAAATACCACTCTTAGTCATAGAATTCACAGTCTTTCTCTTAAAAACTA-TTTAAGACTGCCTGTGTTCTTTCTCACTACCATTTG-CACTGAACTTTCAATACCAATTAACCAAATTCTAATTGATTTTTGTAACC-TG--ACTCCATTTTCCTCAAGTTTTATGTCTGCTGAAGGTTATTGATGCATTTAGTTTTCTTGGGAAAGCTAAAATAAAAGAAAAAAGTTCAGGACAGGATTTGTAAAGAAGGCCATGTGGAAGACGTTTTGGTTATCAAATACATCAAAAAGGAGA-----TTATTGAACAAAGAACTCATCGCTT-CATGGTGACTAGAGGTCCTTCTGGATCCAAGA-----GACTACAGATGAATAAAAGTC----CAAGTTAGTCCATAAGCACATATAATCCTTTATGAGAGAAAACAATGCATACA-----ATAGAACTGAGATTATTTTCTTTTTCCAGCAGAAGGTAAAA-----TTCAAGTAGAAT---TGCATCAACTGAGAGGATGAAGGCACC-----------ATGAAATTCA-GTCCTGGTGAGATGTTTCACTGTTTT----------AAGTTTCTCTATCTACTCA---CTTTGCTA-GCTAGAGAATATGGGTGGGTCCTAAGAACAAAA---GGCTG--CTCCAG--------------GGAGGTGTGATGGAAAGGGGACTTCTGGTGGCAGGCACAGATGCTCTTGATGTTGAGAGAATAGAGAAAGTGACAAAGGAACTTAGAAACTCCTTATTATCTTTTTCTGAACT----------GGAAGAAAGGAAGGCATATTACAAGCCC--------------CGGGAAACAAAGCTGTCTTTGAC--AGCCCCTTCAGTGTTTAAATATTTGCCACAATGACTGAGCTTCCCGAGGGCCCACCAGTTACCT--GCTTTCGTTTGGAGCCCACCT-GTCTTCCATGCT--CTCATGTTCTTGGAATGGAGGACTCCTGGAGGACCTGGTTAATGCCATTTCTCTGTGATTATTTTTAGTCATATAAATGACTGATGATACCAGCAGGGAAGAAGTTTCCTGAAACTATGGACCTTGGGATGTCTTTGGCTCAACCAGCTTTATGCTCATCCAGAGTGGGTAAAGGCTTGGAACATAAATCTTTGAGACAGTT--TGTTTGGAGGACAGTTTGGAGAGGAAGTGGAAAAAGAATGATAGGAACTTTTGTATTCCCCAAATCGTGAAGA-ACAGAAGTAAAAA--------TACTTGCTGCTTGGGTCCTTTTAGAACTTGGTGTCTTTATGTGAAACTAGCCTGTATTTATAGCTTCAAAGAGCAGAGGAGAATGGAGAGTTTTTTCCTTGACATTCTCTATGCATATATCCTTAGGGACTTACCCCTTTGTCTGCATTTCTGCATTTGAATGTTACAGTCCACATAGTGGGTGTTTACCTAAGGA--------TCTCTTTCTACATTACTTGGTACTGAGTAGGTTTTCA-TGTTTAGTGTGTAGGATACATTATAAGATTATTTCCAAATATTTTCCTGGGGCAATGGGAGTTACTG-CTGAATATCA--GAGAAGCACAG-----AATAGACCTAGGTGCACCTGG a score=39883.000000 s hg15.chr15_random 316694 523 + 366089 CTAAGGGAACCCATATAGC-TCAGGCTGTCACCTCCATCTCCCAGTGTACCAGGAGGAGTGGCTCCCCTGGTCCTCTGCCCACAGCTG-CCCCGCAGCACCAGCCACTTCCAGCACACTGCCAGCAGACCCTGGGAGAACTGGCATAC---GAAAGAAGTGCTAACTCCAGAGGTAGCACTAGGACCCACAGGTGCAAATTGCAAAAGAAAAAGTT------CAGTTGCACTCTGACCCTTGGAATTTTCCAAACCCGGACAAGGAGGTCTCTGCAGCTGATAAGCCCCATCTCAGGAGTGGGCATTGCTTAGAGCCCGCACAGCTCTATGGCCTGAGCCTAGTGTTCATGGCATTATCAACAACCAAGGCTGGCGGCAGGCATGAATGTGGGGGTGGTGACTATACAAGGCTTAAGAAAGAGAAACGTTCTGTATTCTCACCAGTACTGTAAATGG-TATCCTTGTTTCCCACAGAGCCTTTGAATCTGGGCAATAGGATCTCTTGTTAAGAATGGGGCTGGGCTGGGTGTGGc s mm3.chr7 83322439 475 - 134401573 CTAAGAGAAACTAGACAACTTTAGACTGAGACCAGCTTCTTTTAATACACTAAGTCTAGTGACTCCCTGGGCTCCATGGACA--GTTGTTTTTGCAGCACCAGACTCTGCATCCATTCTGAGAATCAACCCAGGAAATAGTATTCTGCTTGTACAAAGTTTCCTTTTCCATAGGTG----TAAGCCCCATTGTTAGAACGT----ATGAAGAACTCTTAATATATGTGAACTTTGGCCCTTGGAACATCCCACATTTAGTTAAGGAAGTTACTGGACCTGAAAAGTACAGTCTCTGGAAGGACTGTCAGTCAGAGTCCATATA-CTTCATGATCTGCACCTACTATTTACAGCATTATTAGCAATGAAACTTGG-GGCGTG-ACTGATTTTGAAGTGAGGTGTACACATGG-------GAAAGAAAGATCCTGT-TTTCTGCTCATCCTATCAAAGT-TTTTTTTATGTT----------------------------GTTTTCTTTTTA--AATAGGAAAG--------ATGGT s rn2.chr1 167086496 477 - 276301343 CTAAGAGAAACCAAGCAACTTTAGTCTGAGACCAGCTTCTTTCAATACACTAAGTCTAGGGACTCCCTGTGGTCCACGGACACAGTTGTCTTTGCAGAACAAGACTCTGCATCCATTCTGAGAATTAACCTAGGGAATAGTATTCTGCTTGTACAAAATCTCCCTTTCCTTAGGTA----TGAGGCCCATGGGTAGAAAGT----ATGAAGAACTCTTCACATAAGTGACCTTTGGTCCTTGGAACATCCCAAATTTGGTTAAAGAAGTCACTGGACCTGATGAGTA-GGGCTCTGGAAGGGCTGTCACTCAAAGTCCTTGTA-CTTCATGACCTGTGCCTAATATTTACAGCATCATTAGCAATGAAACTTGG-GGCATGAATTAATTTTGAAGTGGGAAGTACACAAGG-------GAAAGAAACACCGTG--TATCCACTGATGCTATAAAAATGTTTTTTGATGTT----------------------------GTTTTCTTTTTA--AATGAGAAAG--------AAGGT a score=131227.000000 s hg15.chr15_random 317528 1447 + 366089 ctctggacttggagcaaacagctatgtttaactccttatcattcaccatctgtgggcatttagcaaggcattttgcaacact--tttgctttcttgtaaaataaa---------------gt-----tcaaatagcttaatttacaatgttattgtacaattcagctaagcttatccttgtaaaAGTCTCGAGTAAAAAGTATAAAA----ACTGTGTGTCATTTATCAATCGGCATTATTGGGATGTGAATAGCACACTGCATGTGGGCTCAGAGAA---TATGGGCTAACTATGGGCCTTTCCAAGAGAAGTGGGAATCACTCACGACCTTTCCCTCCTTCTGCAAAGGCAAATTTACAAGTCTTCTTTTAAGCATGTCATATTGATATATGCATA----------------------AAAT-----------------------TTTGGtttt-ttaattgaacttattattgagataactgttgatttatatgcagttgcaaacaataatac---agggaaatcctaggtacatttaactcaccttcccccagcaataaccattttag----tatatcaca---------ccagaatattgacatggatacaattcactgattttgttcagatttctccagtgttacttatacttatctgtgtgtctgtgtatgtatttaggcgcgtttagttctagataaatttaccacccat----gttaagttcatgtatg--caccaccaaagttaagatTCTTAAGAGTACTGATcaatagatacctacattaaaaga-gaagatggccccaaataaatagcctaacattacacctcaaggagct---aaaaaatgaacaaagcaagcccaaagttacaagaaggaagggaataacaaatatcagaacagaaataaatcaaaatagaataaaaaaccatagaagaaatcaataaaactaaga--gttag-----tttaaaaacaaacaaacaaaatcgacagaccctgaggtaaacgtaaaaaaaaaaaaaagagaaaagcctcaaataaataaaaccagaaataaaaggaaggacattacaacagatgcctcagaaataaaaaggatcataaaggactattgtgaacaatattatgccaacaaattggataacctaagggaaacagacaaactccaagaaaaatttaacctaccaaaattgaatcaggaagaaata----aaaagcctacacagaccaataacaaataa-aaagatcagagtagtaattaaaaatttcataacaagtacgacaacaacaaaaagcccagaatcaaatggttttgcaactaaattccttcaa--acattcaatgacaaattaataccaacatttcctaaattcttccaaaaaatagacctagagg--gaatacttcctaacacattctatgagtgcaggatcaccctgatacctaagccagacagatactgtaag---aaaagaaaactacaggccaatatcgctgaaaatattgatgaaaaaaacacaataaaatattagcaaaccaaattcaacaacacatcacaa s mm3.chr7 83323092 1407 - 134401573 -cCTAGATGAGGTTCATCTTG--GCTTTTGA---CCTATTGTACAAAATCTGAGAA---GCAGTGGACTAATTTGCCACACTACCTTACTTTCTTGTAAAATAGTTAAATATGTTGCACAATGCAAGTTAAATAACTCA--TCACAATGTTATTGCATAGCTCCATTAAGATTTTGCATATTAAAGTCCTGAGTTGAACATATAAAG---------GTCTTATTTACCACCCAGCAGT---GAAGTGAGATATGTGTACTACATAGTAAATTATGGATATTTTTTGATTAATTATAGGCCCTTCAAAG--AAGTAGGA-----TTACCATTTTACCCTGCCTCTGCAAAG------TTGCAAGTCTTTCCTTAAGAATGGCAGATAGACAAACAAATAGGTAAATATACAGATAATAGGAAGATGATTAGAAGTTACTGTGATTTTTTTCTGTTTT-TAAATTTAAATTGTTGTTTAGGATTACgtagttttatctacaattgtaagcaataatat---aggacagtctcaag----------------tttcttagtgctaaatatgttgaaatctttagcacaatgacttagctagaaggcagacattgatataacacatcagtcctattcagacttccctagtgtgccataat-gtatttgtgtttcagt---tggat--------atttagttcaat-aaattttacaacatgtgtaagttaatattatgcatgtttaccactacagttaaggatacttagaataC-AATAAATAAATACCCAATTTTGAAAA-AAGAAACACTCCAAATATGTAGCTTAATATTATATCCCAAGAGGCTATGAAAAGAGGAACAATCCAATAT--AAATTAGATGAAGGAAGGACATAAAAA--------------ATAAATCAAATAGAAAGCAAAAGTCATTGAAAGAATCAGCAAAATTTGATACATTGTTG---TTTTTAAATAGGCAGAATTATTTAATAATTTCTTATATTAAC-TAAATAGTGAGGTAACATAAAATCAT------------------AATAAAATTTCagaaattacaacagccatttcagaaatacaaagaaacataaaggagtattt-gaacagctatatgccaataaa----atagcttacaggagacaaataaattcc-aggaaaatattttctactaagattgagtgaggaaaaaaaatccagagaacctacgttgaccaataatagagaatgaagat--------taattaaaaatttctctaca-----------aaagaaaaaccctggaccagttgtccttatacctaaattcaatcaatgccccccaa--aagaagtaacattaatatttcctaaattcttcccaaa---aggccacagggtagaatacttccaaatttagtttacaagtgcagcattcctttaaggcccaaa--ataaagaaatcacaaGTTGAATAGAAG-----AGGTTGCCTTCTAGCACAGTCTTGATGAAGA--------------ATCAACAGATTGGTTTCAATAGCACATCGAAA s rn2.chr1 167087168 1374 - 276301343 -CCTAGTTACGGTTCAGCCTG--GCTTTTGA---CCTATTGTTCAAAATCTGAGCA---GCAGTATAGTAATTTGCCACACCAGTTTACTTCCTTGTAAAATAGATAAATAACTTG----AT-------------------TCACAATGTTATTGCAAAGTTCCATTAAGATTTTGCTTATGAAAGTCCTGAGTTGTACATATAAAGGCTGACCATGTCTCATTTACCACCCAGCAGTAGAGAAGTGGGATACGTATACTACATACCAAATTATAGAGGTTTCTTGATTAATTATAGACTCTTCCAAGATAATTAGGA-----TCACCACCTTATCATGCCTCTGCAAAG------TTGCAAGTCCTTCCTTAAGAATGGCAGATAGACAGACAGACAA--------ACAGATAATAG--AAATGATTAGACGTTA-----------TTCTGttttgtaaatttaaattgttgtttaggataatgtagttttatctataattgtaagcaataatacagaagaacagtcttaag----------------tttctcagtgataaatgctttgaacactctagcacagtgtcttagctgaaaggctaacattgatataatatatcaattctattcagacatccctggtgtatcttata-atatttgtgtgtcagt---tgtat--------atttagttcaataaaaatttacaacttgtttaagttAATATGATGCATGTTTAGTAGTAAAGTTAAGAACACTTAGAGTAC-AATCAATAAATACACAATTTTGAAAAGAAGAAACACTCCAAATAAGTAGCTTAATATTATAT----------TAT-AAAAGAGGAACAATGTAATCTC-AAATTAAATGGAGGAAGGACATAAAAAA---------AGACATAAATCTACTAGAAA--AAAAATTATTGAAAGAATCAGCAAAATTTGAT--ATTGGTGACTTTTCTAAATAAGCAAAGTTATCTAGTATTTGGTTATTTTAAC-----TAGTAAGGTAACTCAAAATTAT------------------AATAAAATTTCAGAAAAAacaacagacatctcagaaatacaaagaaggataaatgaatatttcaaacaactatatgccaataaa----atagctgacaggagacagataaattcc-aggaaaatacagtctactaagattgagtgaggaaaaaaaa-ccagaaaacctacactgacaaacagtaaagagtgaagat--------taatttaaaatctctccaca-----------aaagaaaaaccctgaaccagatggcctgatgcctaaattctatcaatgccctccaa--atgaagtaacattattatttcttaaattcttcccaaa---agaccacaggatagaatccttccaaatttaatttagaagtgcagcattccactgatgcctaaa--ataaagacaccacaag-ggaatagaag-----aggctgtcatgtagcacagccttgatgaaga--------------atcaacagattggtttcaatagtacattgaaa a score=54237.000000 s hg15.chr15_random 322162 578 + 366089 GCGTATTAGCCATGTGGCTCCACCTCCAGAGGAGGATATCTGATCAGCCTCCAGGGCTTCA-----------------------------------------------------TCCCCTAAGTCCCTGGCAGG--TGTTGCAGCTGTTCCTTTCCTCAGGCTGCAGGTGAACAAGTGGGTGGCCACGCTTTGTTAAGTGGCATGGCCATCG-AGAGTCATCCGGCTCTGTTGAGGCATCATTG-----------TCCTTTCTGCTGGAAAAGTTGAGTCTTCCTGAACCTTGAAGACAAACCACAAGC-TCATCGGTTGTTGTTTGT-------ATGCATGTGTGACAGAAGAAAAAAAATTTCTCTTGAGAGAGGTGTTCAGTGCTCCCCTCATCCTCTTGCCCAGAAGGTGCCCCTGTTAGCACAGAACGCCCAGTATCTGTGAGTGGAGCAGGGGCAGGTgctatgcgcctggggacaggccacttcatctttatgtgcctcgatctcccc----------------acccacaatgagATCTG-------GATCACACTTC---TGAGTGACTGCTACCAGGTAGCCACTGGCCCATGTTTCAGTGGAAAGGAGAACAGGAGCCCAAAGATGACAAAAGACACAGCCCCACTG-TCCAGAAGCTCACAGCTAGGA s mm3.chr7 83332795 640 - 134401573 GCATATTGGCTTTGTGGTTCCAACTCCAGAGAAGAGAGTCTGCTCTGCATCTAACACTCCACACATAAAAGTGTTTGGCATTAACTATCCCACTCCAACCAACACTTGAGTTTCTCTTCTTAGTACACCACAGTTCTGCTCCCACTGTTTGCTGTTCCAGATTCAAGTTGAACATCCTCATGGTCTGTCTTTGTTAGGGGCTATCGTCATTTCAGTGTCACTTGTCTTTATTGAGACACCTTTGTTTTGTTTTGTTTTTTTCTGGTGCAAAAGATT-TTCTTTCTGAATCACTAAGAGAAATCATAAGGAGCACTTACTATTGTTGGTGGTG---CTGGAGAGGTGGGGCAGAAGGGAAGACTTATTTTTAGGGACATTTTAGGTAA-CCCCTTATTTTCT-----GGGAGGCCCTCCAGTTAGT-TAAGACGTCCACCATTTGTGATTGGAATGGGGAGGAGCATTATGGGA---TAGAGAGG----------TGGTCAGAACTCAGTCTCCCT----------------ATCTGTAATATGATTGGATCAGTAGAACAGACTTTTGTTGAGTGGGTCCTACATGGCAGCCATGAGCCTCTGTTGTGATGAAAAGGAGGGTAGGAGACCAACAATGAGGAAACACATGGACCCATTGTTCAGAGACCTCACAGTCAGAA s rn2.chr1 167094294 636 - 276301343 GCCTACTGACTTTTTGGCTCCAACTCCAGAGAAA------TGCTCTGCATCTAACACCACATTCATAAAAGTATTTGGCATTAAATACCTCACTTCAGTCAACACTTGAGTTTCTCTCACTAGTACACCACAGTTCTGCTTTTATTGTTTCATGTTCCAGCTTCAAGTCGAACATTCTGATGGTCTGTCTCTGTTAGGGGTTATCATCATTTCAGTGTCACTTGTCTTTGTTGAGGCACCTTTG----GTTTTTTTTTTTCCTGCTGGAACAGTTT-GTTTTTCTGAATCCCAAAGAGAAATTATAAGTAGCATGTATTATTGCTGGTGGTGGTTCTGGAG------------AGGGAAGACTTAGTTTTAAGGACATTTTAGGTAA-ACCCTCCTGTTCT-----GGGAGG-CCTCCAGTTAGT-TAGGACTTTCACCATCTGTGATTGAAATTGGGAAGAACATTATGGGATAGTAGACAGG----------TGGACAGGACTCAGTCTACCTATCTATAATTCTACCAATCTATAATATGATTGGATCAGGAGAGCAGACTTCTGTTGAGTAGATTCTACAAGGTAGCCATGAGCCTCTGTTATGATGGGAAGGAGGTTAG--GACCAACAGTGAGGGAACACATAGACCCATTG-TCAGAAAGCTCACAGTCAGAA a score=1391.000000 s hg15.chr15_random 322740 55 + 366089 AATGAGATGCCCTTTCCTTAGTTCCTAATCAAAATTCCCATTTCAGGCCAATAAC s mm3.chr7 83333435 47 - 134401573 AATAGGGTGTCCTTT--TTTGTTTATAATAAAAATC------TTAGGCAGATAGC a score=5994.000000 s hg15.chr15_random 322920 56 + 366089 TTAACCTTATGTCACAGATGTTAGCAAACTCAGTCCAAGAAAAAAAAGGCAATTAg s mm3.chr7 83333983 55 - 134401573 TAAGTCTTATGT-AAAGCTGTGAGCCAAATAACTTCAGAAAGGAACAACTGAGTGG s rn2.chr1 167094932 55 - 276301343 TAAGTCTTATGT-AAATCTGTAAGCCAAATAAATTCAGAAATGAACAACTGGGTGG a score=185708.000000 s hg15.chr15_random 323520 1696 + 366089 TTTTTAAAAAGGCAATTAATACTGTTTTTACACATTATTTTGAAAGGCATTTTGATGATGCAAATAACCCACGTTACATACAGAATAATTATGAAATATAGGTAAAAGGAAAATGAAAATTACAAAATTACGGATACCTGGAAATATGTGCTTCTGACTGTGGGTCTGTCTCTCCATCTTCACTTGCTCAAAAGTAAAAATAATGACATCTTTGCTGCTCTGCAACCTGCTTAGTACTTAAATGAATTTTCCATATTTATATAAATGATGAAATCCCAGCACTGCTGTTTTAATGAATGCAGGATGATTCAGTTCAGATGTACCATGAtttgattatcctaaagaa-attacaataaccatct------------------------ttacatctat------atatctgtacacatccttatttatttagaaggaattcttagaaactgaattgctgaataaaggCACGTTTTATACATACTGCAAAATGGCTAAGTTTTTTG-GGTAATCTACTTCATGGATAATAAACTGCAATATGGTATACTAAACCTGACTTCTTCCCAGCATGTCACAGAT---CCGCCTCCACAAGTTACCATTCTGACTTCAAATGACTTGCTTGAACAAACTCACGTGCCTGATGTTGACTCACCT---ATGTTATTGCACCAT---------GAAAGATGTGG-AGCGCATCATGTTTTCACACGAATTAGCATGGAAAGCTGGTAACTT----TATAGTTTTACCACCTCAAGCTTTTAATACCTTTCTTGCTGCAATGTATTGCCAA-------CCAATGTGAACCATAATAG--CACCGAGAGAAAACAGGATGCAGGAGGGAAGGAAGAAAAGTAATATTCCTTAAAATGTGCAGCACCATGTTCTCTAAATTTTGAAATACTGAACAAAAAGCATTAACAGGTTTGTAAACCTTTAACACAAATTGAGTTCTATTTCCTCTGCTGGCCCCTGGGAAGGGTATGTGGCCCAGTGGTGGGGACCTGAGACTTGGCTGGAAAGTCAGGGCTCTGGGTCTTTTTCCACACTTTAAAGCTCAGTGAGCAAATTTG---AGATCAATTAAGTTCCCCATCTGGAACCGGATGAAAAAGCTTGCCAGATCCACCTCACGTGATACCACAATTTCCTATGAAGATTACTATTAAATTAAGGAACTATGATGAAGACCAACTGGCGTAACTGCTTGGGTTTAGTTATCTTCCAGAAATGATTCATGCTATACGTATTTAATTAGTTTT--TTTCAGTTATTTGAAAGGCTCCTTTCAGGAGGATGTTGGGACACAATTACATGTGACATTTGGCTGAGAGCAGTGACTCCTAGGTCGTGACCTGTCCACCTGCGTGTGCCCGTAGCAGCATTGAGCAGGTCTTCCCAG-AAAAGCCAAGACAGTGGGA--AAATGATCACCTGGTATAGCTAAGTGTGAGTACAGGCTACAACATTGTTGAGCTACACATAGCCACAGACACCAAATGC--------ATTAGGTCGTTCTA-AAACCATAAAGGATTCCA----ATGTTTCATAGCTACATTTGTGGACTA----------GAAATGATGGAGCTACCTAAATTCCACAGATATTCTGATTAGAGTCTCCTACTAGATGTA---ATTTTTTCCTCAAGCTATCAATAGCAAAATTAACAAGTGAGCAAGCTCCTCTCCATCTCCCTG--TGGAACAGCCAACAATTAGGAGAAAGAAAAGTCTTATAGCTGGTGAGAGAC-TAGGATGTGAAGGCTG s mm3.chr7 83334039 1614 - 134401573 TTT--------------------------------------------CATTCTACTTTTGTAAATA---------------------------GGGTAAGAAGAAGAGAAAAATGAAAATCACATTACT-----------AAAATTTGTCCTTCTGAC------ACTCTACCTCCACCTGTGTTTTCTCAAAGGT-GGAGTGATAACATTCAATCTGCTTAGCAATCTTCTCTGAACTTTAATGAATTTTTCAT----------ATAACTAAGTCTCTATGCTGTCATTTTGCTGGGTGAAGAGTGATTTAATTCA-ATGCAGTCTGGTTTAATTATCCTAAAACT-CCTATAAAAAGCTTCTGCATATGTTTCTGAACTTTACTTATTATATTTATTATCTCATATCTATGTATGCCTTTATTGAGTTAGAACTAATTTCTAGACATTACTGTTCTGAATAA---TATACTTTATGCAGATTGCCAAATCAATAAGTTGTCTATGGTGATTTGTATTCCAGATAATGCTCATCACTAGGTCACACTGGAACT-ATCTCTTCACAGCATGTCATAGGTGTACTATCCCTGTGAATTACTA--CCCATTTCAAAGGACTCCCTTACACAAACGCACATGTGTGATATAGAATGCCCTGCCATAACAATGGATCATGCAATACAAGAAGAATGGGG-AAAG----ATGTTTCCATCTCAG-TAGCACGGGAAAGTGATGGCACTTAATGTCATTGAATGATATCAGGCTTTCAATCTCTCCAT---CATAATGAAGAAAGAACATGTCATCCCTGGGAACTATAATTA--CACACAGAGAAAACAAGATGTAGGACGGGAAGGATGAACAGAGGATTCA---------AAAAACTCACATCCTTTAAATTACTTAA-ATTTAGCAAAAACATTTAGCTGGTAT-------TTTCACACACAATAAAGTCTCTTTCCCTTTCTGGTCCCTGGGTA------CTGGCTCAATGGT-AGGACTTCTGGTAGAGATGGAACAGCAGGATTCCGGGGCTTGCTCAGTGCCTTAAAACTCTTTGAACAAATTTGAACAAATCAATTAGGTTTCCCATCTGGAACCGGATACAAAAGCTTGCCAGGTCCACCTCACACAATGTTACAATTCCCAGTGAAGGTTGTTATTAAATTAAGAGGTTGTGATTAAGACCAACTGGCGTGACTGTCTGGGCTTGGTTCCCCTCCAGAAATGATTAATGCTAAACTTGTTTAATTAGTTTTTCTTACAGTGATTTTAAAGGCTACTTTCATGAGGATGTTGGACCATGATT-------ACACTTGGCTTCGAGTATTGATGCCTGGACTGTGACCCACTCACTTTTGTAGGTCCAAAGCAGCACCCTTCAGAACTACCCAG-AAAAATCAATATTATGAAATGAAATGATCACCCAGTACAGTCATGAATGAA---AAGATAGGATATTTTC--ATTATACAGGG----AAGGAGCATGGGTTAGGGGAGACTGAGCTGTTTTTAAAATGACAAATAATTC------TCTGTTTGTAGCTACCTCTGTGGCATATGCAGCTATGTAAGCAATGGAGCTATGTAAAATATGTAGGCAATTTGAATATAGTCACATGCTTGGAATGTTTTTTTTTTCCTAAACCTGCTAATATCAGAAGTGACAA--GAGTA---------CCTTCTCTTTGCATGAAACAA----TGATTAGGAAAACCAGGAGTCTCAGGACTAGTGAAGGACTTAGGATGTGAAGATAG s rn2.chr1 167094988 1589 - 276301343 TTT--------------------------------------------CATTCTACTTTTATGAATA---------------------------GGGTAAAGAGAAGAGAAAAATGAAAATCACATTTCT-----------GAAATTTGTCCTTCTGAC------CCTCTACCTCCACCTGTGTGTTCTCAAAGGT-GGAATGATGACATTCAATCTGCTTGGCAATCTGTTCTGAACTTTAATGAATTTTTCAT----------ATAACTAAGTCTCTATGCTATAATTTTTCTGGGTGCACAGTGGTTTAATTCGCATGCAGTGTGGTTTAATTATACTAAAAAAACCTATGAAAAGCATTGGCATATGTTTCTGAACTACACTTATTATATTTATTATCTCATATCTATGTATGCCTTTATTGAGTTAGAAGAAATGTCTAGAGATTATTTTGCTGAATAA---TATATTTTATGCAAATTGTCAAGTCGATAAGTTGTCTGTGGTGATTTGTATTCCAGATAATGCTCATCACTAGGTCACACTGGAATT-ATCTCTTCACAGCATGTCATATATATACTATTCCTGTGA-TTACTA--CTGACTTCAAAGGATTCCCTTGAACAAACCCACATGTGTGATATAGACTGCCCC-CCCCAACAATGGACCATCCAATACAAGAAGGATGAGACAAAG----ATGTTTCCATCTGCG-TAGCATGGGAATGTGATGACACTTACTGTCATTGAACAATATCAGGCTTTTAATCTGTCCCT---CATAATGTAGAAAGAA-------TCCCTGGGAACTGTAATGAAACACACAGAGAAAACAAGATGAAGGAAAGGAAGAATGAACAGAGGATTCAGTAAG----AAAGCATCATGTCCTTTAAATTACTTAA-ATTTAGGAAAAACACTTAGCTTGTAT-------TTTCACACAGAATGAAGTCTCTTTCCCTCTCTGGTTACTGGGTG------CTGGTTCAGTGGT-AGGACTT-TGTTAGAGGTGGAACAGCAGGATTCTGGGTCTTGCTCAGTGCCTTAAAAGTCTTTGAACAAATTTGAACAAATCAATTAAGATTCCCATCTGGAACCGGATAAAAGAGCTTGCCAGGTCCACCTCACACAATGTTACAATTCCCAGTGAAGATTGTTATTAAATTAAGGGGTTGTGATTAAGACCAACTGGCGTGACTGTCTGGGCTTGGTTCCCCTCCAGAAATGATTAATGCTAAACTTGTTTAATTAGTTTTTCTTTCAGTGATTTGAAAGGCTACTTTCATGAGGATGTTGGAACATGATT-------ACACTTGGCTGTGAGTA-----------------------------CTGTAGGTCCAAACCATCACCCTTCAGAACTACCCTGAAAAAATCAAGATTATAAAA--AAAAGATCACTCAGTACAGTCAAGAATGAA---AAGACAGGATATATTC--ATTATACATGA----AGGGAGCATGTGTTAGGAGAAACTGGGCTGTTTTT-ATATCACGAATAATTCTGTTGGTTTGTTTGTAACTACCTTTGTGACCTATGCAGCTATATAAGCAATGGTGTTAAGTAAAATCTGTAGGCATTTTGAATAGAATCACATGCTTGGAATG----GTTTTTCCTAAACCTGATAATATCAAAATTGACAA--AAGTA---------CCATCTCTTTCAATGAAACAATCAGTGATTAGGAGAAACAGGAGTCTCAGGACTAGTGAAGGATTTAGGATACGAAGATGG a score=29420.000000 s hg15.chr15_random 325219 347 + 366089 GAGCTGGGATTGGTGCTGCAAAGGAGATAGCACGG-----ACAGGAG----------------------------------------------------TGGCTAGTGCTGACCTTGTCC--------CAGGCA------CTGCAGCCAAAAGAAG------TTTGCTTGTGACCAAACTTCTCAGTCATT------AGGATtca------------------tctccattgtacagataatgaaa-taaagactcaga----------gatgaatcactttcagatgcatccacagtcagtcaatagATGTTTGAAGTAGT--TTTCTGTGTTTCTCTTGTGCCAAATACTAAACTGTTTCTTCTAGAGAAGAGAGATCTTAAAATCATGAAGTCCAACAATGGCCAAGGTGTAGCTAGGCAGAGCTGGGGCTGTTCAAATATGAACATCATTAGGAATG s mm3.chr7 83336012 445 - 134401573 GACCTGGGATCAGTACTA-AAAACAAAAATCATGGGCAGAGCAGGAGATGGGGCACTTAGATTTTTTAATACCTGACTACATTTTCAGGTGTTATGTTGTTGTTATTGTTTTTGTTGTTCTCCTTTTGTAGGCAAAGAAACCAGAGCTTAAAGAAGATCTGAGTCACTGGC-----AGGTTTTCAGTTTTTGAAAGAGGGTCTTACTAGCTTTGAACTTGTCATCCTCCTTGCTAGAATACAGGACTTATAGATATATGCCACTTGGCTCATGAGTCTTTCGTAGGTGTTTACACA--CAGTCTACAGGTGTTCAAAGTAGGGCTTTCTGTGCTCTTCTTTTGCCAAATACAATATT-CCTCTATGAAAATCTCTGAGCCTTAAAAGAATGA--TTCACTAAT---CAAGAAATAGATGAACAGTACCATGGT--TTCAAATAAAAGCACTAACATTCTTG s rn2.chr1 167096579 413 - 276301343 GAGCTGGGATCAGTGCTA-AAATCAGAAATCCTGGGCAGAGCAGGAGATGGGGCACTAAGACTTtttaattcctgactacattttt-------------ctgttgttgttgttgttgttttcattttataggcaaagaa-ccagggcttaaagaagagctgagtcacttgT-----AGGTTTTCAGCTTTTGAAAGAGGGTCTTA------------------TCCTCCTTGCCAGAATATTGGAATTATAGACATAGGCCGTTTGGCCTATGAGTCTTTCGTAGGTGTTTACACA--CGATCTACAGGTGTTCAAAGTAGTGCTTTCTGTGCTCTTCTTTTGCCAAATAAAAAATT-CCTCTACTAGAATCTGTACGTCTTAAAAGCTTGA--TTCACTAAT---AAAGAATTAGATTGACAATACCAGAGT--TTCAAATAAAAGCGCCGAGATTCATG a score=1143.000000 s hg15.chr15_random 325566 117 + 366089 ATGACA-GGAATAATCATTATTATTATaacaataataaacatttgctgagtaccaactatgggccagacacgagtttgggcactttagatTCTGTTTTCCTTAAGATGGGGGA---------GGCTg s mm3.chr7 83336457 115 - 134401573 AGGCCATAGAATAG-------CATCATAGCAACAATGTGTATTTGGAGTGCACTGACT----GCCAGGTGCTAATCTGAACACTTTCTATATT-TTTTAAACAAAATGGAGCACGCACAGCTGCCTG a score=34482.000000 s hg15.chr15_random 325977 476 + 366089 GATGGGGGAGGCCATATTGCAATAATAAAATATCATCAATATTTTCTGGGACCTAAACCGACAAAGTCCCAGAAGATTTTATGGTACTATGTGTCAGTTTTGGACTGGCCAGGCTGTGCTGTATGTCATTTTGCACTACCtggcagataaagagaaatatcaaatcacacgctgtctcctgaagctccagccagaagtgaacaaacagataccacaagcca-aagcacaatcccaaggccaggcctgatttgaaggggagcaggctgtgcct---aagga---tcagaaatattaggtgccagcagcaacgacccccataCATGTGTTCTGTCATTTacctccccaaaagacttttacagaagagaaaatgcggcatggagagcttcagggacctg-tgtaaatgccacacagctaagtagagacaagcttggccttgactccaggcagctggactccacagtctgtgctctgtttgTAAATTt s mm3.chr7 83336572 402 - 134401573 AGCAGTGTAGAAGCTTTTGCAATGACTTGAGGT--TCA----TTTCT----CATTCACCCTATAAGTC-----------------------TTTTGATTTT--------------------TGTGTTACCTTTTACTGCCTGGCAGCTGTGAAGAGATATAAAATCACACATTA------AATGGCTCACCTACAAACACTGGGCCAGATGCAATAGGACATAAACACAGTCACCAAGCTGTAGCTGGTTT-CAGGGGAGCA-GCAATTCCTTTCAGGCA-AATCAGAAATAACAGGTCATTACAGGAACACTTTCCACATATGTCTCATGCCCTTTACCTCCATCAAA----CTTAGAGTACCAGAAAGAAGGCTCAATGAGATTAAAGGACCTATTGTAAATTTTA-----GTCAGTAGGATACAGCTTGACCTATACCCCAGGAATATGCACTT-----------CTTTCATTGTTTATTT s rn2.chr1 167096994 404 - 276301343 AGCAGAGTATCAGGTTTTGCAAAGGCTTGAGGT--TCA----TTTCT----CATTCACCCTTTAAGTC-----------------------TTTCAAATTT--------------------TGTGTTACCTTTTACTGCCTGGCAGGTGTGGAGAGATATAAAATCACACATTA------AATGGCTCATCTACAAACTCTGGGCCAGATGCAATAGGACATAAACACAGTCACCAAGCTATAGCTGGTTT-CAGGGGAGCA-GCTATTCCTTTCAGGCACACTCAGACATAGCAGGTCATCACAGGAACACTTTCCACACATACTCCATGCCTTTTACCACCTTCAAA--CTCTTACAGTACCAGAAAGAGGGTTCAGGGAGATGAAAGGACCTATTGTATGTTTTA-----GTCAGTAGAGTACAGCTTGACCTAT-TCCCAGGAATATGCACTT-----------CTTTCAGCATTTATTT a score=2647.000000 s hg15.chr15_random 326758 26 + 366089 ATAAttttttttttaattgacggaca s mm3.chr7 83336974 18 - 134401573 --------ATTTTTAATTAACAAATA s rn2.chr1 167097398 18 - 276301343 --------ATTTTGAATTAACAAATA a score=11567.000000 s hg15.chr15_random 337950 73 + 366089 TTTTTTCTTCCCATGAGAAAATATACTTACTATAAACTTAGGAGGAAGTCAAGCCACCTCACTTCCTTTCTGT s mm3.chr1 134813557 73 + 195869683 TTTTTCCCTCTCAGAAGCAAAAATACCTTTTCTAAATACAGAGGTAGCTCAAGCCACCACAGTTCCTTGCTGT s rn2.chr13 45882233 73 + 105800825 TTTTCTCCACTCAGAAGCAAAAATATCTTTTCTAAATACAGAGGTAGCTCGAGGCACCACAGTTCCTTTCTGT a score=28666.000000 s hg15.chr15_random 360981 286 + 366089 gggacacaattcaaccaacaacTGTGGTAATAGACATGTAAAATAGGGTGAATGCATGATACTGACAAGGTGTGCACACAGCAACAAGGATAT-CTTAAAAACACTTATCTGAGGGAAAAAGGAAGA-----------------AGCAAAATTGCATTTACGTAATTTAAAATGT--ATGCATACAAAACAGGTCTAC---------------ACATTTTATGATGTCATCTACAAGGAAAGAATGCATGCCAACTATTACATTAAATTAAATTAAAATGAAACCTGTGCT-CAGGGGTAGAATGAAGCAGGAGATGGGGAC s mm3.chr7 51139260 268 + 134401573 GGTATGCAATTCAACTAATAATTTAGGTAACAGACATATAAAATAGGGTAGATACCTGTTACTGGCAAGATGTATATA---CACCTAGGATATGTTTTAAAGCACATACACAAGCATTAAATTAAAAAGTAGGCTGAAATATATAGTAAAATTACATTTATGTAAGTGCAGCTATAAATGCA-AAGAAGTAGATATGT---------------ACATTTT------------------AATGAATCCCTGC-------TTCATTAAAT----------TGGGACCTGGACTTCAGGGATAGAATGGAATTGGGAATGTGCAC s rn2.chr1 109293574 283 + 276301343 GGTACACAATTCACCTAGTGATTTAGGTAACAGACATATAAAATAGGGTAAATACATGCTACAGATGAGATGTATATA---CACCTAGAATATGTTTTAAAGCACATATACAAGGAATAAATTTAAAAGTAGAGTGCAATATATAGTAAAATTAGATTTATAGAAGTGTAGCTATAAATGCA-AAGGAGCAGATATATTTTACTCTGATATATGCATTCT------------------AATGAATCCCTGC-------TTCATTAAAT----------TGGGACCAGGACTAGGGGTATAGAATGGAATTGGGAATGTTTAC a score=15787.000000 s hg15.chr15_random 361714 198 + 366089 ACAAAACATAAAATGAAAGAGAGGCTGTTCTCAAGTTAATAAGGAGCCTTGATCTGAGTGGTATGCTTGATGTCCTGTGCACCTGAGGTCCAAAAAAGAATTGATAATAAAATAAACACATAGAaataattgtcaacacttatttagcacttaccatgtgtcaggtactgtgctagctcttacagacatacaaagtag s mm3.chr7 51139528 174 + 134401573 AAGGTGTGTGAAAAGAAAGAAGG---GTGTTCTGGTTAGTGAGAGACTTGGATCTGA--TGTATAAGGGATGCCCTTTGCATCTG--------CATACAAATGATAAT----CAAAAGCAGAAGTATGGTAGCAAATAA--ATTTAGCACT-----TGTATCAGGTACTGAGCCAGCTTAGATGGACATGTGAAGTAG s rn2.chr1 109293857 168 + 276301343 AAGGTATGTGAAAAGATA------------CCTTGTTAATGAAAGGCTTGGATCTGA--TGTATAATGCATGCTCTTTGTATCTG--------CATACAAATGATAAT-AATCAAAAGTAAAAGTATGTTGGCAAAAAA--ATTAAGCACT-----TGTGTCAGGTTCTGGCACAGCTTAGATGGACATGTGGAGTAG a score=26332.000000 s hg15.chr15_random 361912 276 + 366089 gtgctagaaatacctccagtttacaaatgaggaaactgaggctcaaaatggg--aaggcaagtcatcctaggcaaggccacacagctggtggagccaggaattgaatttaaaaatctggctccagagccctgttctcagccaT-------GCATGAGAAAGTTGTCAC-GTATGCTATATGTCTGTATGTTTATATAcagtcctgcat-tatttaatgatgag---------gagacattctgata-------aatgcaacgttaggcaattttgtcattgtgtgaa-tgtcatagagtgtact s mm3.chr7 51140277 298 + 134401573 gtattagtaacg-ttccacttta-aaatacagaaacttaggctaaagttgtg--aacataggttagcttaag-tggagcacacagctgtgggag-caaagattgaactggatcacctaattctagacccctcatcgcagccattccactgATCTGAGAAAAACATCTCTGAGGGgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtTAGCAACATTCAAATACACAAACAAAGCCATTCTTAGCAACTTTGCTTTTATTTAAATTGTCACATAATGTGCT s rn2.chr1 109294626 297 + 276301343 GTAGTAGTAACA-TTccacttta-aaataaggaaacttaggctaaagttatgctaacatacgttagcataggatggagcagacagctgtgggag-taagagttgaactggatcatctggttcaaaacccctgatctccgccaatatattgaactgAGAAAACTGTCTCTGTGGGgtgtctgtgtgtgtgtgtgtgtgtgtgtgtg----tgtgtgtgtgtgtgtgtATCTTAGCAACATCCAGCTACCCAAACAAAGCCATCCTTAGCAACTTTGCCTTTATTAAATCTGTCACATAACATGCT a score=185536.000000 s hg15.chr15_random 362496 1852 + 366089 TGTCTATCTATCTTATCAATGTCTAACTAACACAGTAAAAGTATTCTTAACAACTTTATTTCTTGTTTGAGCTCTTAAATGGCATTTTGAAATGTTGTAATATCAATCAATATAAACTTATAGAAATATTAATCATTGAGATTAAACCAAACCAAATCTCTAGGCCAAATCCCTATCAATCTCTTTAAGAAGAATATCGGATGGTAGTTTGTTCTGC---------ATTTGTGATTATCTTAAAATAGTATGTAATGTAATATAGGAGAGAAAAATCATGAGTATTGAGTTTTCCTTTTGTTTGGAAAATGGCTAAATTGTATCTTATTGAAACTTGATACTATAGATTGATTCCCTTTTCAAATTCCCTTGGATATGGATTTTGTTTGATCTTGATTCCACATTCTCAATACTGAAAGTTTTCTTTGATGCCAGACATCTGGGGGTCACTTAACAAATGAAACAGCAGGGACTCATTTAAGTACCCAAATCTACCTTAGGTCCTAGAGATTGCAGCTGCCCCAGATCTGTACAAATCTGAAGTCACAGAATAAGGACTACAAGATTATCAACAAAAGAATTAAAGTAGGTATGGATTTTACTCACTGCCATTTGACTTCCTTAGAGAGAGATGGCTTGTAGAAGATGTGGCATTT-TCTATCTCTCCCCAGAGACACAGTGGGGACTCTGTTTAGTCCTCGAAGGGCACTGTTTATAATATGAAAATGTGCTTCTGGGAAGATTTCCTATGGCTACCACTTTCTCAGATGACCTGGTGCCATATTAATAAAATGTTAAAC---CCACAAACTCCTGATGAGTCAATAAATAATGTAGGCTGAAATCACTAAATATTATGCCTCTGGGGGCTGTTCCATCGAAATGTACTGATTCAACACTTTTCTTCCGAGAAAGTTCTGCCTCATTCAGCATTCCTGCTGTGGAG---TTTGCCAATCTGAATACCAAGGCCCTGGAAGGCT------GCTGTCA-CCTTTCTCAGCACACAAATGATGGGGATGTAAGGCTGGTGCTCA-TGGAATTGCAATTGCCTCTTGTCTTTAAAGGC-AGTTAATTTCTACCCAGTTTCTGAGACTGTGGAAGGAAAGCAGACAAGG-TCTCTGCTTGACTAGTAGATTTTGCTCTTCCCCACCCTCACCATAAAGTTCAAAGGCACAAACTGAAAAGATTTTGA--AAGCTGGCTCAAAGCCTTTTTCTTCTGTTAACAAAAAGT-TAGAGTATTTTGCTTGGGAGGATCAGTTTCATAATTGTATCAGGGCTCCTATTCTAGAATTTCTAGAGCCAATTCTTCAGTAATGGGCATCTCAAGCAAGCACATGCAAGTTGTATGTTTATTAACAATTTTTTTTAAACTGGCAACGCTTCTCATGTTCCCTTACAGAGGGAGGAAGACATATCTGGAGAGACTG-TGGAAAGAGCAGAAGAAAACATA-AACTGATTACACCCACAGAACAATTGCTGATGGAACATGAAGGATGCTTTAGGGAAAGCACCCTGATGTTTCACATTCAAATTGCCTCATCATGTGTTTTTAAGGTGCTGCCTGTCTCCAGGCACAGAGGTGCCTGGAACTAAAACCTCAGTGTTTGTCCTCTCTGTATTATCCTTGGCTCCAGAGCAAGGAGAGAGTTCCAGGACAGGTGTGTACAGTGTTTGCAGGT------------GAATCTGCATGTTGGTCTGTGCACTCGTTTCTCCTTTCCACCCCAGCAGTCAGTGGTGATTTATAAGCATCCTTCTGCATGCCCTTGTGATGTGAGGGAAAGAGCAGAAACATTTGGTTTAGAAAATAAATGGAGTCTAAGTAAGACCTTGAGC-------CTTTAGT-----------GGGTtagttgtcagcttttggacagat------------- s mm3.chr7 51140488 1701 + 134401573 tgtgtgtgtgtgtTAGCAACATTCAAATACACAAACAAAGCCATTCTTAGCAACTTTGCTT-TTATTTAAATTGTCACATAATGTGCTAGAATACTGACCATGAATCCAACATGAAT-CATAGAAATATTGAAAATTGGAATTAAAGC------AGTTTCTAATGGAAATTTCTAAAATATTGTTCAAGAATAATAACTGAGAGTGGGTAATTTTTTGGTTTTCGTGTTTGTCACTCTCTTAAAATTTCATG-----------------AAGAAAGTGTAAATATC-----------------------TAGCTAAGTTATATCTTAGTGGTAACCCCTCCTAGAGACTAACTCTCATTCCACATCCCATTGGAGGTAGATCATTT-------TGATTCTATATGCTC-ATATAGAAATATCTATTGGATACT-----TC------TCACTTAATAATTA---CAGAAGGAATCCACTTAGGGGATGCAATCTAACTTG-----TAGAGAGTACAGCTTTCCC---CTTACATGGACTTGCAACTGTGGA------ACCTCCAGATCTTCACAGGAAA----AAAGTAGGTATGGACTGTCTTTACTCAC--------------GGGAGCACAGGCTTGTAGAAGGCACAGCATTTGCC---TCATCCCCAGATACATA-----GACA--GCTTAGTCGTCAAAGTACACTGTAGATAATATGAGGAT-TGCTTCAGGGAGATTTCTCAGTGGGTACAAGCTTCTCCAGTGACCCAGTGCTGTATTAATAAAATGTTAAACTCTCCCCAAATTGTCCAC-AGTCAATAAATAATGCAGGCTGAAATCACTAAATATTGTGCCTGTGGGGGCTGTTTCATTGAAACTCACTGATTCAACAC---TATTCCAAGGAAGTTCTGCCACGTTCAGCATTCTTTCTGAGGAGGAATTCGCCAGCCTGAATACCAAGGTCCTTAAAGGCCCTTTCGGCTGTCACCCTTTCTCAGCTCACAAATGATGGGGACACAAGGCTGGTTCTCAGGGGAATTGCAATTGTGACCTGTCTTCAAATGCTGGCTCCTTTCCACTCTGCTTCCCAG-TTGCAGGAGGAAATTAGATAAGC-TTTTTTCCCTGAAGATCACTCTTACCCTTATTTACCT-CACCATGAAGATCAAAGGCA-GAACTGAGAAATCTTTGAACAAGCTGAGCC-AATCCGGTTTCTTCTGCTGAGAGGGTCTGCAGAGTA-TTAGTTTGGAAGATGCAATTTCAAATTTGAATC-TGGCTCTCATTCTGGAATTCCTA---CAAGTGCTTCAGGGAT-TGCATCTCATACAAACACATGAAAATTGCCCA-TCAAGAAGAATTTTTTCTTAACT-------CTTCTCATATTCCCTTTCAGAAAGAGGAAGGCACATTGGAAGAAATCATTAGCAAAAGCAAGATAGAACACACAGCCAACAGCACCCTTGGAGCACCTGCTCACTGAACAAGAAGGATG-TTTTAGGCGAGCA-----------------------GCCGGGCCAT-----------------CCTGTT------------GGCACCT----TTGAAA--------------CTCTCTGCCT----CTTGG-----GAGCAAGGAAAGGGTTCCAGGTCA-GTTCGTGTACTGCAGACAGATTTGAGCCTCTAAAAATTTGTATCTTAGTCTGTATGCTAACTTC-----TCTGCTCCAGCAGTCAACAGATATCCATCAGCATTCTACAGCATGCACTTGGGGGATAGGCTAAAGACTCAGAGCATTGGGTTTTACAGACAAAT-AAGTCTATGTTAGATTCTGAACATGCCTGCTTGAGTTCAGAATTTTACAATACTTTGCCTGCTTTTG--CTGTTGTTGCTTtttctc s rn2.chr1 109294836 1612 + 276301343 tgtgtgtgtATCTTAGCAACATCCAGCTACCCAAACAAAGCCATCCTTAGCAACTTTGCCT-TTATTAAATCTGTCACATAACATGCTGGAATACTGACACATAATCCAACATAAATTCACAGAAATATTAAAAATTGGAAATAAAGC------AGGTTCTAATTGAAATTTTCAGAAAACTATTCAAGGAA----------------------------------GTTTGTCACTCTCTTAAAATTGCATG-----------------AAAAAACG--AAATATC-----------------------TAGCTAAGTTATATCTTAGTGGTCGCCTATTCTATAGACT----CTCATTCTAAATGCCATTGGAAGTGGATCATTTCT--TTTTGATTCTATATACTC-ATACAGAAATATCTATTGGATGCT-----TC------TCACTTAATAATTG---CAGAAGGAACCCACTT-GGGGACCCAATCTAACTTG-----TAAAGAGTAAAGCTTTCCC---CCTACATGGACTTGCAATTGAGGA------ACCTCCAGATCTTCACAGAAAG----AAAGTAGGTGTGTATTGTCTTTACTCTC--------------GGGAACACAGACTTGTAGAAGGCACAGTATTT-CC---CCATCCCCAGATACATA-----GATTTTGCTTAGTCGTCAAAGTACACTGTTGGTAATATGAGGAT-TGCTTCAGGGAGCTTTCTCAGTGCGTACAAGTTTCTCCAATGACCCAGTACTGTATTAATAAAATGTTAAACTCTCCCCAAATCGTCCAC-AGTCAATAAATAATGCAGGCCGAAATCACTAAATATTATGCCTTTGGGGGCTGTTTCATTGAAACTCACTGATTCAACAC---TATTCCAAGGAAGTTCTGCCACATTCAGCATTCTTTCTGAGGAT---TTCGCCAGCCTGAATACCAAGGTCCTTAAAGGCCCTTTCCGCTGTCACCCTTTCTCAGCTCACAAATGATGGGGACAAGAAGCTGGTTCTCA-GGGAATTGCAATTGTGACCTGTCTTTAAATGCTGGCTCATTTCCACTCTGCTTCCAAG-TTTTAGGAGGAAATTAGATAAGCTTTTTTTCCCTGAAGATCACTTTCGCCCTTATTCACCTCCACCATG-------AAGGCT-GAACTAGAGAATCTTTGAACAAGCTGAGCC-AAGCCAGCTTCTTCTGCTGACAGGGTCTGCAGGGTG-TTAGTTTGGAAGATGCAATTTCAAATTTGAATC-TGGTTTCCATTCTGGAATTCCTA---CCAGTGCTTCAGGAAT-TGGATCTCATACAAACACATGAAAATTACCCA-TCAAGAAGAACTT---------------------CCCTGTTCCCTTTCAGAAAGAGGAAGAAACATCAGAAGAGATCATTAACAAAAGCAAGATAGAGAACACAGCT--------------------------TTGAACAAGAAGGGTGTTTTTAGAGAAGCA-----------------------GCCTGGCCATGGA-----GAGGGGC--CTCTTT------------GGCATCT----TTGCAA--------------TTCTCTGCAT----CTTGG-----G----AGGAAAGGGTTCCAGGTCA-GTTCCTGCACTCCAAGCAGGTTTGAGCCTCTAAAGATTTGTATTTTGGTCTGTATGCTAACTTC-----TCAGCTCCAGAAGTCAACAGAG----GTCAGCATTCTACAGCATGTACTTGGGGGATGGGCTAAGGACTCAGAGCATTGGGTTTTACAAACAAAT-AAGTCTATGTTAGATT---------CCTGCTTTAGTTCAGAATCTTAGAATTCTTCGCCTGTTTTTG--CTGTTGTTGCTTTGTTTC a score=33444.000000 s hg15.chr15_random 364379 382 + 366089 ---------------------------------------------------------------------------------------------------------------------------------------------------ctatgaaacggggCCA-----------------TGATCTTGTAAAAGGATGAAAATGACA---TGAGTAATTGCAAATAATTATAAACA----TCAGGGAAAATTCAATCTACATCTACTACGCCTTCCATTCCTTTTCAACTATGTTATACATTTCTTTTAACTTTAGCTATTCATGGTGCAAGGGATCTTCCAGATCTCTAGAAAGCTAATTCAAAGACTGACATTAG---AAAACTTTACAGAAAAAAAAAGATTAAAGAGTTGCAGGCATG---GGTGCAAAGAGCAACATAGCTGCTAAAGGAAGCTTGAAATCTTTGTCTAGTCCTGGGGACCCAGCTGGAG-TTGTCAGGAATCAGCAGAGCAGGTGTTCA-GCTGAGGTTTGGAAGAATTCTTAGCCCATTGAAAT s mm3.chr7 51142335 504 + 134401573 ttcctctctctctctctctctctctctctctctctctctctctctctctccctctctctctctctct---------------------ttctctttctttctttctttctttctttctttctttctttctttctttcattcACCTGTCTGTGAAATGAGACCAGAGTACCTGCTACACATGGATGTTATTAAAGGAAGAAAACAAAAGACTGGGTAATTATACATAATCATAAATA----TCAGGG-ACATGTTATCAACATCAGTGACACTTTCTATTCCTTT---ATTATACTAGGCATTCC--ATAATTTTAATTATTCACTTTATTAGGGG----CAAAGTCTCAGAGAAGCCAATTCAAAGACTCACGGTGGATAAGAGTGTTATAG--AAAATGGTGTTTAAAAGGTTCAGGAATACATGACTTAAGTAGTAACCAAGATATGCAAGGAAAAGTAGAAGCTTTGCCTAGTACTGGGAACTC--CTCGAGATTGTCAGGAATGAGCAAAGCCAGTGTGCAGGCTGTG---TGGAGG---------------GGAAT s rn2.chr1 109296918 521 + 276301343 tTtctctctctctctctctctctctctctctctctctctctctctctATCAATCTATCTTATCTTGTGCAGGAACCTGAGGCTAGCTGTACTCCTTTCCTTTTACTTCCTTCCTTTCTTCC---CTTTTTTTTTTTAATTCACCTGCCTGTGAAATGAGTCCAGAGTACCTGCTACACAAGGACATTATTAGAAGATGAAAATAAAAGACCGGGTAATTATAAATAATTGTGAATACGTGTCAGAG-ACATTTTATCTACATCAATAATACCTTCTATTCCTTT---ATGGAATTAGACATTCC--ATAATTTTGGTTGTTTG-TCTACAGGGGA----CAAGGCCTCAGAGAAGCCAATTCA--GACTCAGCGCACTTAGGAGTGTTATAG--AAAACGGTGTTGAAAAGGTTCAGAAATGCATGATGTAAGTAGAAATCTAGATAAGGAGGTAAAAGTAGAAGCTTTGTCTAGTACTGAGAACTC--CTTGAGATTGTCAGGAGTGAGCAAAGCCAAGGTGCACACTGTG-----GAGG---------------GGAAG a score=25645.000000 s hg15.chr15_random 365464 297 + 366089 AAAGTTCTGTTCAGGTCAGGACTAGAACAAATATTAATATATATTTACAAATGTTTGCAATGTACAAAAGGCTCTGTTAGTGATCTGCTGTAAAGAAAAAGAAAGGCTGCATCAGCCTTTGAAGTTTTGTTTGCCTTTGAAGCTGGAGGAAGTCATAT-TGCCTGAGTGCTGCTCTTCACATTAAGAAGGTAGGGCCA--------CTTGAG-GGACACCATCTGACAGGCTGCAATC-TAGGAGAGACCTACAGGGTTCCAAAGGCTCAGTGTGCTAATTTCTGAAACAGGATAGAACCTCCCATCA s mm3.chr7 51142839 250 + 134401573 AAAATTCCCTTCAAAT----------------------------------ATATTTGTAAAGTGTGTGAGACTCTATTAGTAATCTTCTAAAAAGAAAGGGAAA---------------TTAAGTTTCTTTGTTCCTTGAGGCTCGAGGAAGCCCTATCAGCCTACCTGTTGTTCTCCAC----AGGAGGTAGACCTGGTTACAGCCTTTGGTGGTAACCACCAGAAAGGCTACAAGCTCTTGGAAAA-----GTGCTTCCAAGAGCTCAGGGTGCTTATTTGCAAAATCAGAAACAGGTTCCCATTG s rn2.chr1 109297439 248 + 276301343 AAAATATCCTTCAGAT----------------------------------ACATTTGTAAAGTGTGTGAGACTGTATTAGTAATCTTCTAAAAAGAAAGGGAAA---------------TTAAGTTTCTTTGTTCCTTGAGGGTAGAGGAAGTCCCATCTGCCCACCTGCTGTTCTCCAC----AGGAGGTAGAACCAGTTACAGTCATTTG-GCTTACCACCTGACAAATTACAAAC-CAGGGAAAA-----GTGATTCCAAGAGCTCAGGGTACTTATTTGCAAACTCAGGAACCAGCTCCAGTTG a score=2588.000000 s hg15.chr15_random 365761 37 + 366089 CCTCAGAGCGATGGGACGGCAGGCAGGCCTTGGCGAG s mm3.chr7 51143337 35 + 134401573 CCCTAGAGAGCTAGAATCATTAGTAGACTT--GAAAA s rn2.chr1 109297925 35 + 276301343 ACCTAGAGAGCTGTAATCATTAGCAAGCTT--GAGAA a score=379.000000 s hg15.chr15_random 365798 24 + 366089 CCTCACTTCATCTCCACCCTCTTC s mm3.chr7 51143372 23 + 134401573 TCTCA-TCTACCTCCAACTGCCAC a score=2825.000000 s hg15.chr15_random 365822 18 + 366089 ATGAAGCCCCTGACTTTT s mm3.chr7 51143395 18 + 134401573 AAGAGGTCCTCTTCTTTT s rn2.chr1 109298898 18 + 276301343 AAGAGGTCCTCTTCTTTT