##maf version=1 scoring=multiz a score=14856.000000 s hg15.chr19_random 150269 230 + 301858 TTGAATCTCAGAT---AAAAACAACAAAAATACATCAAAAGTCTTTAATGTA--AGCCAAGCATTCAGTCATCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGT-TGGTTATAGTGAAGGATGCAAGGTGTC-----AATTCTAGTTGGAACAATTTCCAGGAAGCCATGTTCTGCTCTTGACCA--AACAGCCACTGGGCCTCA-TGCAAGGTAGAAATAGCCTGCATACGTCATC s mm3.chrX 31731088 231 - 149996094 TTGATGCTCAGGTTTAGAAAGGAAC-AGAGTACATAAAAGGA-TTTAGTATGTTAATCAAG--TTCAAACATTTAGAACAAGAAGGTTTGG-TCCAAGACATAACTCAGTTGTGGTCATAGAAAATGTT-----GTGTCTGAAGGACTAAAGTCTGAA-AATTTTCAGCAAGCTATGATCCTC-CTAGACCACAATAAATCAGTGCATCCATCTTGCAGCAAGAGACAG-GTTCACAGAGCAAC s rn2.chr1 215612843 221 - 276301343 TTGACATTCAGATTTAAAAAGCAAC-AAAATGCATCAAAAGT-TTTAGTATG--AATCAA----------ATTTAGACTAAGAGGGTTTGG-TCCAAGATGAAACTCAGATGTGGTCATGGTAAATGTT-----GTGTCTGGAGAACTAAAGTCTGAA-AATTTTCAGGAAGCTATGGTCTTC-CTAGGCCACTGGAAATCAGTagatcccacttgaagccagagacag-gaacatgccccatt a score=254.000000 s hg15.chr19_random 150499 31 + 301858 CTC----------CCATGA-TGTGGTCAGCATGTAAACT-----------------GCA s mm3.chrX 31731433 58 - 149996094 aCCTTGTGGCTGAGCATGAGTGTGATCTGTTGGTGAATCTGGCTTCCCGTGGTTT-GCA s rn2.chr1 215613176 59 - 276301343 ACTTTGGTGTTGACTGTGAATGAGGTCTGTTGGTAAGCTTTGCTTCCTGTGGTCAAGTA a score=11558.000000 s hg15.chr19_random 150530 131 + 301858 TGAGCCCCTCACAACATCCTGTGTGCTGCTGAACTGAGCTGGGGCGCAGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAATCGAGG s mm3.chrX 118313482 112 + 149996094 TGAGCCTCTCAGAACATCCGG--------TAGACTTTGTTCTGGCTCTGCTCCTTGCCAGCCA-----------TGCTGCTCTGGTTCCTCAGCCTCGTGTGTTCTGGTGAGTTCTGCTGAGGATGAAAAG s rn2.chr1 215613242 123 - 276301343 TGAGCCTCTCAAGACATCCTG--------TAAACTTTCTTCTTGCTCTGCTTCTTTCCAGCCAAAGCAAAACCATGATGTTCGAGTTCCTAAGCCTACTGTGTTCTGGTGAGTTCTGTTGAGAATGAAAAG a score=7476.000000 s hg15.chr19_random 150661 403 + 301858 GAGGGAGCGGT--GGGGTGGAGATCTGGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATAGGCCTGGAGTGGAGATATGGGCCTGGGGTGGAGATATGGG-CCTGGAGTGGAGATATGGGCCTGGAACTGTAGATATGGGCCTGAAGTAGAGATATGGGCCTGGAGTAGAGATATGGGCCTGGAACTGTAGATATGGGCCTGGAGTGG------AGATATTGGCTTGGAGTGCAGATATGGACCTGGAATTGAGAT-----ACGGGCCTGGAGGT------GGAGATATGGGCCTAGAGTGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTGGAACTGTAGATATGGGCCTGGAGTAGAGATATGGGCCTGGAGTGGAGATGTTGGCTTGGAGTGC s mm3.chr9 98020510 418 - 124467299 GAGGGAGAGGTCTGTGATGAAGAAGGAGGTCTGTGGTGAGGATGAAGGTCTGTGAGAGAGATGGAGGTCTGTTGGGGAGATGGAGGTCTGTGGTGAAGATGGAGGTCTTTGAAGAGAATGTGGGATCTGTGGTGGGAATGAAGGTCTGTGG-TGAGAATGAAGGTCTGTGGTGGGAATGAAGGTCTGTGGTAAGAATGAAGGTCTGTGCCCCCAAA-AAAGGTCTGTGGTGGGAAAAAAAATCTGTGGTAGGAATGGAGGTCTGTGGTGAGAATCAAGGTCTGTggtgggaatgaaggtctgtggtgggatgggggtctgtggtggggatggaggtctgt-ggtggggatggaggtctgtgg-tgaggatggaggtctgtggt-gagatggaggtctgtggtggggatggaggtctgtggtga a score=3720.000000 s hg15.chr19_random 151064 31 + 301858 AGATATGGGCCTGGAATGGAGACACGGGCCT s mm3.chr9 98020928 31 - 124467299 ggatggaggtctgtgatagggatggaggtCT s rn2.chr8 102521541 31 - 127756414 GAATGCAGGTCTGTGTTGGCGATAGAGGTCT a score=1163.000000 s hg15.chr19_random 151095 47 + 301858 GGAGGTGGAGATACAGGCCTGGAGGTGGAGATATGGGCCTGGAGTGT s mm3.chr9 98020889 39 - 124467299 -------gagatggaggtctgt-ggtggggatggaggtctgtggtga a score=6757.000000 s hg15.chr19_random 151142 61 + 301858 AGATATGGGCCTGGAGTAGAGATATAGGACAGAGGTGGAGATATAGGCCTGGAGTGGAGAT s mm3.chr9 98020928 61 - 124467299 ggatggaggtctgtgatagggatggaggtCTATGTTGGGAATGGCAGTCTGTGGAGGGAAT s rn2.chr8 102521541 61 - 127756414 GAATGCAGGTCTGTGTTGGCGATAGAGGTCTGTGGTGAGCATGGAGGTCTGTGGTGGGGAT a score=2993.000000 s hg15.chr19_random 151203 93 + 301858 ATGGGCCTGGAGTAGAGATATAGGACGGAAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAGGTGATGTACAG--------------------------------------------------ATGGA-------------TCATCCAT s mm3.chr15 67573423 89 - 104111694 GTGAGACAGGTGTGCAGATGTCAGGCAGGAGTGGAGATGCCAGGCAGGTGTGCAGCTGCCAGGCAGG------TGTGGAG------------------------------------------------GTGTGGA-------------TACTCCAT s rn2.chr7 69567482 150 + 139049774 gccaggcaggtgtgcaggtgccaggcaggtgtgcaggtgccaggcatgtgtgcaggtaccaggcagg------tgtgcagttactaggcaggtgtcatgccaggcaggtgtacaggtgccaggcaggtgtgtagaagacaggcagCCGTGCCCTAT a score=16077.000000 s hg15.chr19_random 151296 126 + 301858 CATGA-TCTTTCT-TTCCAGGGTTCTTCTTGCTGGAGGGGCCCTGGCCACATGTGGGTGAGTCCTTCCCCCAAACCTTAGGTTGTCATCTCCCCACATAAGATGATGTTCCTGAAACGGGAG-GCAGGC s mm3.chrX 31731799 129 - 149996094 CATGAGGTTTTGTCTTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACGTGGGTGAGTCCGTCCCTAAAACATGGAGTTACGGTCCATTTCCATAGACGGGTTTTATTCAGACAGGAGAGCAGGC s rn2.chr1 215613554 128 - 276301343 CATGAGTTTTTCT-TTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACATGGGTGAGTCCATCCTTAAAACATTGAGTTACCATCTATCCCAATAGATGGGTTTTGTTCTAACAGAAGAGTAGGC a score=5631.000000 s hg15.chr19_random 152053 53 + 301858 CTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGTAGTGCC s mm3.chr7 131051149 53 - 134401573 CCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087891 50 - 276301343 TTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=168100.000000 s hg15.chr19_random 152106 2681 + 301858 TCCTTCTCCCCCAGGTGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCGGCACTGTGGTGTCTGAAGGACAACATGTGACTCTTCAGTGTCGCTCTCGTCTTGGGTTTAACGAATTCAGTCTGTCCAAAGAAGACGGGATGCCTGTCCCTGAGCTCTACAACAGAATATTCCGGAACAGCTTTCTCATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGTTGCAGTTCACACCCACACTCCCCCACTGGGTGGTCGGCACCCAGCAACCCTGTGGTGATCATGGTCACAGGTCAGAGGCTTTCTGTCTGGGCT----TCTCACTGTCCCACCTC-CTGAATCCCAGAGCTTCTGGTGGGGgtgtccatcagggtccaatcatccaggcccagactgtatttggggtaaagggggattcagtacagagaaatagttgctgtggtgggaagaataattgtccccagtgatg---gctacatggtaatccatgaaccctgtgactatttatgtcatagggcaggggactgaaggg----gaagatggagctc-----------aggttgttgatgggttgaccttgcgatggggagacagcctggactgtcctgctgtgctcagagtaatcacaagggtcctcatga-gaggaggaggaagaggaaagtggggttag----agcaacgtcgtg-ggagggagactccatcagccacagcgggctttgaagatgggggaaggccatgagccacaaaggcagtt-ggcctctaagggctggagaagtcaagggaactgattcttccctgagtctccagaggaaacacagccctgtagatgccttgat---tttagcccagagagaactgggtccgatttctgttctccagaagtggaaggggtcattgtattctctct-tgccccatgtttgtgacaattttctccagcagcaacaggaaaccaacacaggaacccaggtgaagcacaagttaagaaaccaaacaaggagaaggttggctacactgattttagcatgggtggg--atactgatgctaccaccaggctcgatccacatagggaggggttgatgctcctggaaccagcaccaggggccaccctatggaagctggggccatggagaaggCACAGACATGACAGGAGAGGCTCCCAATCCCCATCAGGAACAGGGACACTGATGCC----TGCCTTACTGATGAGTTCGTACCTCCTGCCAGCCTTTCCAATCTGTCCAAAAG------AGATTGATTCAGGCTGCTAAGAGCCTGGACATGCAGCCTGTCGTGGTTCCTCTTCCACCCCCACATAAACACCAGGAAAGAGATTAGTGGGAAACAGATACAACAGCATAAGAGGTGACACT-------GAGCACAGTGGGAAGGGAATCAGG-GCTACTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGGAGGGACCTGCA-ACAGGGGT----TATGGGCACAAAAGAACACGGAGACACAGAGAGGAAGGAGAGAGATAGACACCATGGAGGGGAAGCCTCACTTATTTCAGGTCCCATGAATGGGATGAGAAAGGGAGACGCCTTCTGAACTCACAACCTCTCTTCTTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCGGGAGAGACGGTCATCCTGCAATGTTGGTCAGATGTCAGGTTTGAGCGCTTCCTTCTG------CACAGAGAGGGGATCACTGAGGACCCCTTGCGCCTCATTGGACAGCTCCACGATGCGGGTTCCCAGGTCAACTATTCCATGGGTCCCATGACACCTGCCCTTGCAGGGACCTACAGATGCTTTGGTTCTGTCACTCACTTACCCTATGAGTTGTCGGCTCCCAGTGACCCTCTGGACATCGTGGTCGTAGGTGAGAGAATACAGACCTGCCTCTCACCCTTGCTGGGAGATGGAGTGAATGATCTA-GGACTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGGTTCCTATGGAGAGAAAGTGACTTGGTGAGGTCTGTACCAACAAAGGCAGAGAAACAGGAGACACAAGTACAGACCTCATGTCATAACATAGAAGCCAGACACAGGGGCCATACAAGGTGTTAGAAAAAGAGATAAAGA-------GGTAAAGAAGACACAGAGAGACAGATATATCCCAGAGAGA--GGTGTCCTTCTATGCTGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCCATTCTG-TTTTACCTCTACAAAGTGTTCTCTCCCAGGAGAACCCAAAGAGACACAT---------------------CTATCTGGCCTG------AGTTGGGCCGTGT-GGCCCCAGGCTGGTGGCACCTACAGATGCTGTGTTTATT--CTTAAACCT---CTGCCTTCCGTGCAGTGGAGCTGTCG-TCGTCGCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGTTGTGAGTTCCTGGAGTCCCCATACTGGATTCTGAGGCTCATATTCAAATAGCA-CCACATGTTATAGGATTACTGAGAACAA-----------AAGCCCACAGAGAGACACGGA----------GTGAAATCAGGGAAATCAAAAAGCAAAGACATGAACACACAC----------ACAGAATGAGCCAGAAGAAGGGAATTG-AGAGACTCACAGACA--------CATAAAGAGATAGAAAAAGAGGGCAGAGAAGTGGAGCGTATGATGGAAGGAAGCAGAGAAAAGCCCTAAAA-TCAGAGCCCTG s mm3.chrX 118320440 2609 + 149996094 TCCTCTTCTTGCAGGAAGCCATGATAAACCATTCCTATCTGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAGCTGTACAAAGAAGAAGGGTCTCCAAACCATCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACAACAGAACATGCAGGAACCTACAGATGCTTC------CATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGAG--TCCATATTTGGACTATCATTTCATGCCCCCGATTCTCCCAACCCTAGAAATTCCAGAAAGAGCTTTAGTCAGGTTC--ATCATT---------------------ATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT-ATAATACCCATGTATATGTACTTTCTTGTACTAAAGGATTCTTGGG----TTTAAA--ATAACTCAACGAAAAATTGGGCTTTGAAGATGGATATTTGAACCCAGAGAAGGTATCAAAAAATTGACATCAGGGTGAGAGACTA-----AATTAGTCTG----GGTCTGTAGAATTACAACTGTCAGTATGAAAAAAATAATTAATAAAACAGT--AGTTAGCATTAAAAA-GCGTTG-GCGGAGACACTCTATTACTAACACT-GGCAGTGA---TAAACAGACTccaagtgccaaggaatgaatgaggcctctagaagat-gaaaggaaaagataatgaaaaatttctagtgatttgagcagtgacatgtccctgaagaaacattc-----tttatgacattt-agcttgcttcaaaattcggatctccagaa----------tacttttactccttttaagaacagtatt-gtgattattttttctgcaagtgattggaaattaataGAAGGATCTATATCAATGGGTATCTTAAAACCTAGAGAAG-----AGATGTCCAGAA-------AGCA---GTAGGCCAGAATGATGAC-TCACCAAAGT---------TTTGGAGAGGACAATGCTCAT-GAACAAGAATGACAAG-TGCTTGATATAAATTTGTATAATAGCGATTAT----------CAGAAGACTTTCTCTGT------------TAACCACACTCACTACTAAATACCTTA----------------TTTTTCCAAGCATTACAGT-TGATCAAAAGTAGCACAAAGTGACTCATAA----AAGAGCCTGG-TATTAAGCTTGTCATGTTTCCTGCTCTCCCCAAACCTGGAAAGGGGCAATGGGATCTATGTTAGAATGTT---------TCAGAAGCCACATTCTCACAAG---TCAATGGGAAAATATTGTGCTGCTGACAGAGCCAAAGAATTGAGAAGGGGATATAGAGAC--ATGGAGGAGTCTGTGTACAAAGTTGACATAAGCACAGAAAGGCACACAGGGTCAATGACAGGGAAAACAGGGTAAGA-------AAGGGAGGACTATAGATTTTCCAAAACATG----------GAGAATGTGACCAAGTCCATGCAATT----TCCTTATTTCTAGGAATCTACATGAAGCCTTTCCTCTTGATTCTACAAAGTCCCCTGGTGGATACAGGAGGGAATGTGACCCTGGAATGTCACTCAGAGAATATGTTCGATACATACATTTTGATTTCACACAGAATGGGAATAATCAAGAACTCTGTCCAAGTTTCTGCAGAACATCATGAAAGTGGGTCACATGTCAGCTACTCAATAGGTCCCATGACACCTGACCTTGTTGGGACTTACACATGCTATGGTGCTAACAGTTACTACCCCTATGAATGGTCAGACTCCAGTGACCCCATTGACATCAAGATCACAGGTAAGAGAGTGCACACCTGTTCTTTACCCTCTTCGTGATGCATAACAGACATCGTGTAGTGTGGAAGCCTTGGGGCATCAGGTGGAAGATAACTGTGGGAAATTTA--GAGAAAAGAAGACATGGTGGGCATTTTACTGGCATAGACAATATAAACAGAGATACAAGGCCAGACAATTGGTTATTCTGTAAGACACCAATGCAGGGAAGTACAAAGGTGTCACAAGTAGAGATAAATATTCAGGGGTCAGGGGCCACTGGGTGAGCTTCATTT-AACCAGAGAGAATGAAGTACTTCTAC-----TTCCATTCAGACACTTGG-GAAGTTCAGAA--TTTTGTTTGGCTTCTACCTCTGTAAGAAA---TCTGCTGG---------AAGAACCATATATCATACCTCAGGTTAATTGCTTAGTTGGAGTGGTTTTTAATGAGTCTTTAA-GTCTTTGCACAGGTGGAACCTGG-----CTTTGACAACT--GTTTGACAATTCTTCCTTTTATTGTGATTGACCCACTATTTACCCCAGAAAATCATAGCCTTGGGTGATTTAATAGAGCTCCAATCACTGTCTATTGT------CTACA-CATCCAAAC----TTTTTCAGTTCCTTTCCTAAAATTATTCAGACATTCTAGGATGGCCAAAATGAA--TCTAAGAAATTGTGCCCAGGAATATATACATAATTGCAACATGGgagaggagagagagagagagagagacaaagacagagacagaaagagagacagagagagacagaaagagagaaatagagagagagaaagatggagagagagagaaagagagagagagagagagCTGAAAAATAGAAAGCATGGCATGTGTAGAAAGAGAAAACCTATAAAA-TCAAAAGCCTG s rn2.chr1 215634466 2525 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGATGCTTT------CATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGAG--TCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATAGTTTTAGTCAGTTTT--GTCATT---------------------ATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT-GTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATTCCTGAG----TTTAAA--ATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgatgggagactatcctaaattatcctg----ggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagt--tgttagcagaaaaaaagcattatagggagacactctactgctaacaat-ggcattga-----aaaagtctccaagtgcccaggaataaatgaggtctctagaagat-gaaaggcaaaaagaataaataatttctagtgatttgagaagtaacatatccctgtagaa-catttatttatgtatgccattttggcttgtttcagaattctgatctccagaa----------cacttatactctttttaagaactatatttgtgata--tttttctgcaagtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAAAAACTGGAGA----------TGTCTGGAA-------AGCA---ATAGG--------------TCACCAAAGT---------TTTGGAGGGGGCAATGCTCAT-GAATATGAATCAGGAA-CACCTTACATAAATTTGTATAATAGAGATAAC----------CAGAAGAGTTTGGCTGT------------TAATGACCCTCATGAC-AAATCCCTTA----------------TTATTCCAAGGAATATACT-TGTTCAAAAGTGGCACAAAGCAACTCA----------AAGCTGG-TATGAAGCTTGTCATGTTTCCTGCTCTCCCCAAACTTGGAAAGGGACAATAAGATCTATGGTAGAATGGT---------TCGGATGACACAGTATCACAAGAAATCAGTGGAAAAATATTGTGC-GCTGATAGAACAAAAGGATTCGGGAGTGTATATAGAAAT--ATGGACAAATCTGTGTACAAAGTTGGCATAAGCACATAAAAGTACACAGAGGCACTGGCAGGGAAAACAGACTAAGA-------AAAGGAGGACTGTAGATTTTTCAGAACA------------GATAATGTAATCAGGTCCCTGTAATC----TCTTTATTTCTAGGAATCTACATGAAGCCTTTCCTCATAGCTCCACAAACTCCCCTGGCAAATTCAGGAGAGAATGTGACCCTGGAGTGTCATTCAGAGATTATGTTTGATACCTACATTTTGACTTCACACAGAATGGAAATACTAAAAGAAACTTTGCAGCATTTTCAAGAATCTCATTTTAGTGGGTCTTATGCCAGTTTCACAATTGGTCCCATGACACCTGATCACAGTGGAACATACACGTGCTATGGTGCTTACAATCATAGCTTATATGAGTGGTCAGACTCTAGTGACCCCGTTGACATCAAGATCACAGGTAAGAGTGTATATACCTGCTCATTACCCTATTTGCAATACATAGCAGGTATTTTGTTGTTTGGAAACCCTGGGAGGTCAGGAGAACAATGGATTTGGGGAACTCA--GAGAAAGGCAGCATTGGTTAGTATTTTACTGATGTAGACAATGAAAATAAATGTACAAGGAAAGACCATTGTTTGAACAGTAAATCACAGACACAGGGAGATGCAAAGGAGTAATAAG-ACAGATGAAAA--------AAAGGGACGACTTGGCAAGTTTGATTTGAATCAGAGAGAATGAAGTTACTCTAC-----TACCATTCAAACTCTTAG-ACAGTTTATAA--TTTTGTTTGGATTCTACATCTATTGGAAG---GCTACCAGGATCATCAAAAGAATCATGTATCTGGCCTGAATTTAAGTGCCTAGGTACACTGCTTTTTAATGGGTCCTTAATGCCTTTGCAAAGCTGGGACCTGATGATTTTTTTTCTGTTTAGTTTGACAG---TTTCTTTTCCTGTGGTTGACCTAATGTTCATCCCAGAAATCCATAACCCTCAGTG----AATAAAGCACCAATTGCTGTTTGTTCA------CTACA-TCTCCAAACTG--TTTTTCAGTTCATATTCAAAAGTTATTTAGACATTCTAGGTTGGCTAAAGAGAAACTTTGATAGAGTTTTTACAGGTGTATATGCACAATTGAAGTGTG-----TCAGAGATagacaaagatagagaaagacagagat------aaagacagagagagac----------------agagaaaAAAAGACG--------------------------------TGACAGATAGAAAGCATGGCATGTGTGGGAAGAGAAAGCCTACAAAAGTCAAAAGCCCC a score=7194.000000 s hg15.chr19_random 154787 1143 + 301858 AG-GGAGGGGCACAAAGACAGGGAAAGATAAAGATGTGGGGATGGATTGCAGAGACTCCAAAAGGGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGAGAGAGACagatgatagatggatagatagatatagatagatgaaagataaaaggtagatgatagataatagagagacaggtgatagacaaatagatgatgaatgactgatagatgatatagatagacaagtagaaagacagacagatgatatataaatagatatagagagatagaaagataaacacatgatgatagatggatagatgcatacatacatacattgattgatagatgatagataacagagagataggtcatagatacacagatgatgatagatgatagatacatacatagataaatgatagatcgatcaatagatagtagatagaAATATGCAGAAAGTTATGAGCAAGACAGAAAGTGAGAGACTCAGAATTAAAGAAAGAGGAAGATCAAGTCAACCAGTCCAAGGAGGGTCAGAGAGAATAAAATGGTACAAAAAAAGAAAACATAGCTAG-GGATGGAGAAGTGAGGTCAGAGACCTagagagacagagaaggtggaaggaggaaatagacatgaagagagatgggggtggagggtgagagagagaaagagagCATTAAGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGAGAGCTGTGACAACGAAGAACCTCCCTGAGGAAACCACC-TCTTCTCCTTCCAGGTCTATATGGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAATGTGACCTTGTCCTGC------AGCTCCCGGAGCTTGTTTGACATTTACCATCTATCCAGGGAGGCAGAGGCCGGTGAACTTAGGCTCACTGCGGTGCTGAGGGTCAATGGAACATTCCAGGCCAACTTCCCTCTGGGCCCTGTGACCCACGGAGGGAACTACAGATGCTTCGGCTCTTTCCGTGCCCTGCCCCACGCGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGAAAACACCATGCCTGTCCCATGTCTTGTG---------ATCCTAGAGCCATAGCTGAGGAGCTTCCTGCTGATGATGGAGAGAA s mm3.chrX 118283605 872 + 149996094 AGTGGAAGAACTCAAAG-----TGGAGATGAAGAAATAATGATAGATGTTAGATATTTCAAAACAGAGCTGGGGAATCC-AGTGCTAGA-----ACACAG---TGGAGAagttcatacacta-----------------------------------------------------agaggaacaagggagaga-----agatcat-catggctcttgttc-------------------------------------------------------------aaggttagcacgc-------------------CCCTCCCACATTCATAGAATATTCTGTGGTCTA-AAAAGAGAGAT---TAATAAATAGACATGTAAAAA-AGATAAGACGTA-ACAGTAAATTAAATGA-ATTTCAAAAAACAAGTAGTGGA---------GTAAAATGTTAGAATAAAAAAGTGATGTAAGGGACACAGTAT--------------------------------------GATAACTTATAAGGACATGGTACAGAGA--GAAGAGAGAGATAGAGGATGGGTAAATGAAGAAAGAAAT----------------------GGGAAGATATAGAT---------GACAAAAATGTAAGCAGAGAGAGTGATAGTGAG--------------------GAGTGAAT--------------------GAGCACGGGTAAGGAACTAGCCTTCTATCTAAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCTGCTTCAGTGACTATCAGA------TTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGTACTGT-TCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAA a score=457.000000 s hg15.chr19_random 155939 16 + 301858 GATGCCGAGACAGAAC s mm3.chr10 51458823 15 + 130738012 GCTACAGAGA-AGAAC a score=29002.000000 s hg15.chr19_random 161206 334 + 301858 ttgtcctAAAGAGACGTTGTATGTGGTTACCTGTCAATCAAGAAATGTGAGACAAT-TCATATAGAGGAACTGCTATGATTAGCTTCTT-ATTGGTGTCTTGTCTTCCTCCAGGTAACTCCAGATACCTGCACGCTCTGATTGGGACCTCAGTGGTCATCATCCCCT---------------------TTGCTATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGTGCCAACAAAAAGAGTAAGTCTCACGAAGCAGAAGCCAGAGAGCTCAGGGCCATGTGGGGAA-----------GCAGGATGGGAGCACTCAGGTGTGTG----TTCCTTACAGGCAGGATGGTCCCTGACCCAAGGCAGGAGCCACA s mm3.chrX 31750951 324 - 149996094 TTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAA--------CAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAA-AGGAAA---TTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653502 356 - 276301343 -TATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAA--------CAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACG-AGAACA----TTAGTACAAGACAAGGAACATT a score=83424.000000 s hg15.chr19_random 161540 1024 + 301858 GAGGCAGGACTTTCTAGAGAGAGCACCAGACTCCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCT-GATTCTGAA--------CCATATCCTCACATCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCAT-----------------------------------------------------------------------------GACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGA--------GCTCAGAGAGATAGA----ATG---------------------------------------------TCTGAG----------------------TCTGCTGT-TGGCAACTGAGGGACCTCAGGCACCTATGGCCTC-CCCCTGCATGTTGGTATCTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCT-GTT-TTGACGACTTCCGTCTTCTACAGATGCTGTTGTAA---TGGACCAAGAGCCTGCAGGGAACAGA-ACAGTGAACAGGGAGGTAGGTGCTCCTCAGC---CCAGCCTCATGGCTAGTCT--TATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCCCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACGCACAGTTGAATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCGTGTAACACGGAACTTCC-AAATGCTGAGCGCAGATCCAAAGTTGTCTTCTGTCCACCAGCACCACAGTCAGGCCTTGATGGGATCTTCTAGGGAGACAATAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCGTGAGTCTGCATCTTAGGG--CATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCACTTGACCCCTGCCCACCTCTCCAACCTAACTGGCT-TACTTCCTAG-TCTACTTGAGGCTGCGATCACACTGAGGAACTCACAATTCCAAACATATAAGAGGCTCCCTCT s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGG-AAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGT-GGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGGAGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGG-------ATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTC-TGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGT-ACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTG----CATGCTGTTTGTCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcag-gaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga---gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatgagccatggattttaCCACATGTACCTTAGCACATTAG-------ATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTC-TACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGT-ACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTG----TAC----TCTGTCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=3372.000000 s hg15.chr19_random 164682 115 + 301858 GAGGGAGGGAGTG---CGGGGATGGAGATCGGGGCCCAGAGTTGGAGATATAGGCCTGGAAGTGGAGTTATGGGCCTAGAGATGGAGTGATGGGCCTAGAAGTGGAGATCTGGGCCTG s mm3.chr5 52257359 118 + 149719773 GAGGGAGGGATGGACCTGCACCTGGAGCAGTGGGCCTGCACCTGGAGCAGTGGGCCTGTACCTAGAGTGATGGGCCTGCACCTGGGGCGATGGGCCTGCACCTGGGGTGATGGGCCTG a score=10897.000000 s hg15.chr19_random 164896 94 + 301858 --GATGGAGATATGGGCCTGCAGTAGA---GATAGGGGCCTGGAGTGGAGATATGGGCCTGGAGTG-----GAGATATGGGCCTGAAGTGGAGATATGGGCCTG s mm3.chr19 5151374 94 - 61093376 --GATGAAGATGTGGTCATGCCTTAGA---GATGGGGTCATGCCATGGAGATGTGGTCATGCCATG-----GAAATGTGGTCATGTCTTGGAGATGGGGTCATG s rn2.chr1 7693435 104 - 276301343 GATGTGGAGATGGGGGCATGCCTCAGAGATGATGGGGTCGTACCATGGAGATGTGGTCATGCCTTGGAGATGAGATGAGGTCATGCCACGGGGATGTGGTCATG a score=6625.000000 s hg15.chr19_random 165166 166 + 301858 GAAGGAG------------------------------------------ATATGGGC--------CTGGGTGTGGAGATATGGGACTGGAGAGGTG-----ATATGGGCCTGGAGTGGAGATATGGGCTTAGGGTGGAGTTCTGGGCCTGGGGCGGAGATATGGGACTGGATTGGAGATAGGGGCCTAGGGTGGAGATCTGAGCCTGGATTGGCG------------------------------------------------ATATGG s mm3.chr15 67573337 166 - 104111694 GAAGCAG------------------------------------------ACAGGTGT--------GCAGATGTGCAGATGTGAGGCAGGTGTGCAG-----ATGTGAGGCAGGTGTGCAGATGTGAAGCAGGTGTGCAGATGTGAGACAGGTGTGCAGATGTCAGGCAGGAGTGGAGATGCCAGGCAGGTGTGCAGCTGCCAGGCAGGTGTGGAG------------------------------------------------GTGTGG s rn2.chr7 69567341 269 + 139049774 GAGGCAGTTGTGGAGATGCAAGGCAGTTGTGCACATGCCAGGCACATATACAGGTGTCATGCCTGGCAGGTGTGCAGGTGCCAGGCATGTGTGCAGGTGTCATGCcaggcatgtgtgcaggtgccaggcaggtgtgcaggtgccaggcaggtgtgcaggtgccaggcaggtgtgcaggtgccaggcatgtgtgcaggtaccaggcaggtgtgcagttactaggcaggtgtcatgccaggcaggtgtacaggtgccaggcaggtgtgtag a score=6561.000000 s hg15.chr19_random 166253 66 + 301858 CGAGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCAGTTCCACATCCTCCTCTCTAAGGCGGCGCC s mm3.chr7 131051137 65 - 134401573 CAAGGAGAG-ATACCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087879 62 - 276301343 CAAGGAGAG-ATGTTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=66745.000000 s hg15.chr19_random 166319 919 + 301858 TCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCCTTGTGGTGCCTCTAGGAC---ATGTCATTCTTCGGTGTCACTCTTATCTTGGGTTTAACAACTTCAGTCTGTACAAGGAAGGTGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCCGCACA-ACAGGGACATACAGATGTCGGGGTTCACACACACACTCCCCCAGTGGGTGGTCAGCACCCAGCAACCCCCTGGTGATCGTGGTCATAGGTCAGAGGGCTCCTGTCTTGGATTCTCCTTGT------CCCACCTCCTGAATCCCAGAG-CTTCTGGTGGGCATGTCCTTGAGGGTCCCATCACGCAGGCCCTGACTGTATTTGTGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattct----------aatccctgg-------------------------agtctgtgactatgtatgtt----ataggggaagggactgaaggggaagatggagctcatg--gggagacag-cctggactgtcccactgggctcagtgtaatcacaagggtgcacat----gaaaggaggaggaagaggggagtggggattaga---gcagtccagtggaagtcttca---ccagctttgaaggtggaggaagg---ccaagagcc-atgaatgcaggtggcctatagaggctggaaaagtcaaggaactg---attctccagagtctccagagggaacaaagccctgcagatgcctt------------gattttagcccaggaaaaatagggtcc--aatttctgtctccag--tactggaaggtgtcagtgtggtctctcctgcttccatgcttctgataattttgtacagcagcaacaggaaaccaacacTGGAACCCAGGTCAA-GGACAAGTTAA s mm3.chrX 31742777 924 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGAG---TCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGA---GCTTTAGTCAGTTTCATCA---------------------TTATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT-GTAATACCCATGTATATGTACTTTCTTTTATGAAAGGATTCTTGAGTTGAAAATAACTCAAGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAA-----AAAATTGACATCAGGGTGAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG-GCAGAGACACTCTATTCTTAACACTGGCAGTGATaaaaagactccaagtgccaaggaacgaatgaggcctctagaagat-gaaaggcaaagataatgaaaaatttctagtgatttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggcat-----------gcttcaaaatttggatctccagaatgct------------tttgctccatttaagaacagtatttgtgattattttttctgcaagtgattggaaattaataGAAGGATCTGTATCAATGGGCATCTTAA s rn2.chr1 215634466 919 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGAG---TCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATA---GTTTTAGTCAGTTTTGTCA---------------------TTATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT-GTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATTCCTGAGTTTAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAA-----AAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattatagggagacactctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagat-gaaaggcaaaaagaataaataatttctagtgatttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggctt-----------gtttcagaattctgatctccagaacact------------tatactctttttaagaactatatttgtgata--tttttctgcaagtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAA a score=840.000000 s hg15.chr19_random 167412 14 + 301858 TAATTAATTAAAGA s mm3.chr7 131052348 12 - 134401573 TACCTGACTCAA-- s rn2.chr1 214089101 12 - 276301343 TACCTAACTCAA-- a score=10680.000000 s hg15.chr19_random 167426 390 + 301858 AACCAAAGAAGGAGAAGGTTGGCTACCCTGAGATCAGCAAGGGTGGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTTGATACTCCTCCAACCAGCACCAGGAGCCAGCCTATGGAAGCTGGCACCATGGAGAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTATTCATCAGTTCATATCTTCTGCCAAGGATTGCAATTCATCCAAAAGAGATTGAACCAGGCTG-ATAAGAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTTCACCCCCACATAAACAGCAGGAAAGACATTAGTGTGAAA---------TAGATACAACACCCCAAGAGATGAGGCTAAGC s mm3.chrX 118321366 321 + 149996094 AACCTAGAGAAGAGA--------TGTCCAGAAAGCAGTAGG-CCAGAATGATGAC----TCACCAAAGT---------TTTGGAGAGGACAATGCTCAT-GAACAAGAATGACAAG-TGCTTGATATAAATTTGTATAATAGCG-----------ATTATCAGA-------------------------AGACTTTCT-----CTGTTAACCACACTCACTACTAAATACCTTATTTTTCCAAGCATTACAGTTGATCAAAAGTAGCACAAAGTGACTCATAAAAGAGCCTGG-TATTAAGCTTGTCATGTTTCCTGCTCTCCCCAAACCTGGAAAGGGGCAATGGGATCTATGTTAGAATGTTTCAGAAGCCACATTCTCACAAGT------------- s rn2.chr1 215635385 299 - 276301343 AAACTGGAGA-------------TGTCTGGAAAGCAATAGG------------------TCACCAAAGT---------TTTGGAGGGGGCAATGCTCAT-GAATATGAATCAGGAA-CACCTTACATAAATTTGTATAATAGAG-----------ATAACCAGA-------------------------AGAGTTTGG-----CTGTTAATGACCCTCATGAC-AAATCCCTTATTATTCCAAGGAATATACTTGTTCAAAAGTGGCACAAAGCAACTCA------AAGCTGG-TATGAAGCTTGTCATGTTTCCTGCTCTCCCCAAACTTGGAAAGGGACAATAAGATCTATGGTAGAATGGTTCGGATGACACAGTATCACAAG----------AAAT a score=17666.000000 s hg15.chr19_random 167816 2436 + 301858 CCAGTGGGAAGGGAATCAGAGGCTACTAGAGACAGAGGGACAGAGAAGAGGGAGGGAGACAGATGGAAGGACCTGCACCAGGAGTT---AAGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACAGACACCAGCAAGGGGAAGCCTCACTCATTCTAGGTGCCATGGATGGGATGATAAAGAGAGACACCTTCTAAACTCACAACCTCTCT-TCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCGCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCAGGTTTGAGCACTTCCTTCTG----CACAGAGAAGGGAAGTTTAAGGACACTTTGCACCTCATTGGAGAGCACCAT-------GATGGG--GTCTCCAAAGCCAACTTCTCCATCGGTCCCATGATGCAAGACCTTGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTCATCACAGGTGAGAGTGTCCGGAC---ATTCTCATTGTCATTGGGCTGCAGAGTGAAT-------GATCCACGACTTGGAACCCCCAGGTAGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGCTGAGGTTTGTACCAACAGAGACAGAGAAACAGG-AGACACAAGTACAGACCA--GGTGTCATAACGGAGGACAGACACAGGG---------GCCATACAGGGAGTTAGAAAAGACAGAAAGAGTTAAAAGAGACAGACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCACAGACCTGGCACAGGTTAGAAGTTTCATTTCTG-----TTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACAC-CCATATTTCTGACCTGAGTT--------GGGCCCTGTGGCCTC---------AGGCCTTG--------TGGCACCTACAGGCC--ATGTTTATTCTGACACCTCTGCCTTCCATGTAATGGAG--AGTAACCGTCCCAGGATATCATGGCCC------------CAGAACACCAACCCCTGTATGCTGTGTGAACTTGTGGTCTCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAAAGGATCACTGAGAGGCACAGAGAAAAATCAGGAACACCAAAAAGCAAAGACATAAACACACGGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGGAGTGGTGAGAATGATG----------------GCAGGGAGCAGAGAAAAGCACTAAAATTAGAGTCCTGAGAGAGAGGCACAAGGACATAGAAACATGGAGATGTG-GGGATGAATTGCAGAGATTCCAAAGAGAGCTAGAGAGACCGAGAGGCAGAGCAATACAGATgatagatggatagatatagatagatgataaataggtagatgatagataataggttaaagatacatagatGATGATTGATTGATTCATTAATAGATAATACATAGAGATGATGATGATGAAGACAGATAATACGTACAGATAGAGAGGCAGACAGAAATCATAGAGAGAGAGATGATACATACATATAAATAACAGATgattgatggatagatagacaactgatagatacatagatgatatatagatatagatgacaggtagagaatttgtagataggcaccgaatagataaatagatagatcgacagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAACGTGAGAAACTTA---GAATTTAAAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAG---AGAATAAAACAAT----------CCAAAAACGGAAAACATATCTAGAGGTGGGGAAGCGAGGTCAGAGACCTagagagacagagaaggtggaagaaggaa-atagacatgaagagagatggggtggagggtgagagagagag-agagagagCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGAAGGGAGCTGTGACAAGGAAGATCCTCCCTGAGGAAAATGCC--TCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCTGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTA---TGACATGTACCATCTATCCAGGGAGGGGGAGGCCCA-----------TGAATGTAGGTTCTCTGCAGGGCCCAAGGTCAACGGAACATTCCAGGCCGACTTTCCTCTGGGCCCTGCCACCCACGGAGGAACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCATACGAGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAACCCCATATCTGTCTCATGTCCTATG---------ATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGATGATGGAGATAAG----CATGGACAGATGCAGAGAGAA s mm3.chrX 118282267 2236 + 149996094 CCAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATAAGTGGGGAAT--GAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAATAGG-------CTAAGGGTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATA-GAGGACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGGGAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAAATAC-AGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTA--GAGAAAGGTAGCCATCTTGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTGGAGACATAAAGAGTAGAGATAAAGAGAAAGGGGT----GAGTCAGCAAACTTGACATAAATCAAAGAA---TGTGAAATCATTCTACTAATATTCGGGGGTTAGG-ACAGTTCAAA-------TTTTTGGGGACTTCTACTTCTGCAAGACATTTCT------GAGAAGAGATAGATATACTGTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTG------------------CCGACGGTTAAAATCCA--------------TGAAAAAATTATTCAAACACACTATGAT------GGCAAAGTAAAAAGAAAAAAAGAAAAAACCCACAGAGTCTTCCAGTA---------------------------ATAACCAGAAA-ATAATAAAGCAGAAAAATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGA-----TAGATTCAGAG-----ATGGAAAGGGCTGAGAAAATTATAATATGGC-ATGTGTGGGATGAA-----AAAACTACAAAAAGTG--AGAAAG-CTGAGTGGAAGAACT---CAAAGTGGAGATGAAGAAATAATGATAGATGTTAGATATTT------------------CAAA---ACAGAGCTGGGGA-------ATCCAGTGCTAGA----ACACAG------------TGGAGA-----agttcatacactaagaggaaca--------------agggagagaagat-----catc---atggctcttg-ttcaaggttag-cacgcCCCTCCCACATTCATAGA----------ATAT-----------------TCTGTGGTC--------------TAAAAAGAGAGAT-------TAATAAATAGACATGTAAAAAAGAT-------AAGACGTAAC---AGTAAATTAAATGAATTTCAAAAAA------CAAGT-----------AGTGGAGTAAAATGTTAGAATAAAAAAGTGATGTAAGGGACACAGTATGATAACTTATAAGGACATGGTACAGAGAGA----------AGAGAGAGATAGAGGATGGGTAAATGAAGAAAGAAATGGGAAGATATAG-----ATGACAAAAATGTAAGCAGAGAGAGTGATAGT----------GAGGAGTGAATG---AGCACGGGTAA--GGAACT---------AGCCTTCTATCT-----AAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCT---GCTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGG------TACAGAGCCA-----CAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGT-ACTGTTCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAAAGTATAGTAGAGAGCTACAGGGAAGA a score=9261.000000 s hg15.chr19_random 173412 78 + 301858 GTTCTAGGAAACCCTTCAAATAGTT-GGCCTTCACCCACTGAACCAAGCTCTAAAACCGGTGAGTACAGAACCCTCTTA s mm3.chr7 3617009 79 + 134401573 GTTCTTAGAAGCCGATCAGCCCCTCAGGCCATCACCAAACATATCAGACCCAAAGACAGGTAAGTACAGAGAATTCTTA s rn2.chr1 215364121 79 - 276301343 GTTCTTAGAAGCAGCTCAGCCCCTCGGGCTATCACCAAACATATCACACCCCAAGACAGGTAGGTAAACAGAATTCTTA a score=724.000000 s hg15.chr19_random 177585 39 + 301858 aaaagcaggagaaagctgggtctcctgccatctgggtgc s mm3.chrX 118328484 35 + 149996094 AATAGAAGTAGTAGGCTCTCCATCTTGTCCTTTAA---- s rn2.chr1 215653470 34 - 276301343 agtaagagtagtaggttctccATCAAGTCCATTA----- a score=31022.000000 s hg15.chr19_random 177624 331 + 301858 ttgtcctAAAGAGATGTTTTATGTGGTTACCTGTCAATCAAGAAATGCGAGACAAT-TCATAAAGAGGAACTGCTAAGATTAGCTTCTT-ATTGGTGTCTCATCTTCTTCCAGGTAACCCCCGACACCTGCACATTCTGATTGGGACCTCAGTGGTCATCATCCTCT------------------------TCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAA-----------GCAGGATGGGAGCACTCAGGTGTGTGTTCCTCACAAACAGGATGGTCCCTGGCCCAAGGCAGCAGCCACA s mm3.chrX 31750951 324 - 149996094 TTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAA--------CAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653502 356 - 276301343 -TATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAA--------CAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=85125.000000 s hg15.chr19_random 177955 1023 + 301858 GAGGCAGGACTTTCTAGAGAGGGCACCAGACTCCCTGCCCCTGCCTTCAACTCACAGACCGTTGCCT-GATTCTGAA--------CTGTATCCTCATGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCAT-----------------------------------------------------------------------------GACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGA--------GCTCAGAGAGATAGA----ATG---------------------------------------------TCTGAG----------------------TCTGCTGT-TGGCAACTGAGGGACCTCAGCCACCTATGGTCT---CCCCCTGTATGTTGGTAT-CTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCT-GTT-TTGTTGACTTCCGTCTCCTACAGATGCTGCGGTAA---TGGACCAAGAGTCTGCAGGGAACAGA-ACAGCGAATAGCGAGGTAGGTACTCCTCGGCCCG--GGCTCGTGGCTA--CTGTTATTCCCAAAGAGTCCTGGAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACACACAGTTGAATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATATCATCGTGTACACGGAACTTCC-AAATGCTGAGTCCAGATCCAAAGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGAGGGCGTCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATGAGTCTGCATCTTAGGG--CATCGCTCTTCCTCACACCACAAATCTGAATGTGCCTCTCACTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAAAAAACACACTCCTTTGCTTAGCCCACAGTTCTCCATTTCACTTGACCCCTGCCCACCTCTCCAACCTAACTGGCT-TACTTCCTAG-TCTACTTGAGGCTGCAATCACACTGAGGAACTCACAATTCCAAACATACAAGAGGCTCCCTCT s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGG-AAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGT-GGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGG----------AGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTCTGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcag-gaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga---gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatg----------agccatggattttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTCTACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=4507.000000 s hg15.chr19_random 181280 285 + 301858 GTGGAGTTATGGGCCTGGAGTGGAGATCTGGGCCTGGAGTGGATATATGGGCCTGGAGATGGAGTGATGGGCCTA-GAAGTGGAGATCTGGGTCTGGAGTGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTGGAGTGGAGATCTGGGCCTGGAGTGGAGATAGGAACCTGGAGGGGAGATATGAGCCTGGAGTGAAGATATTGGCCTGGGATGGAGATATGGGCCTGGAGTGGAGACATGGGCCTGGAGGTGGAGATATGGGCCTGGAGGTGGAGACATGGGC s mm3.chr2 169689282 280 - 181423755 GTGGACACAGGAATACGCAGTGGACACAGGAATACGCAGTGGAGACAGGAATATGCAG-TGGAG--ACAGGAATACGCAGTGGACACAGGAATACGCAGTGGACACAGGAATACGCAG-TGGAGACTGGAATATGCAGTGGAGACAGGAACACGCAGTGGAGACAGGAATATGCAGTGGAGACAGGAATACGCAGTGGAGACAGGAATACGCAGTGGACACAGGAATACGCAGTGGAGACAGGAATACGCA-GTGGAGACAGGAACACGCA-GTGGAGACAGGAAC a score=5929.000000 s hg15.chr19_random 182667 68 + 301858 GAAAT-------GGGAGAATCTTCTGACACGTGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGTGGCGCC s mm3.chr7 131051127 75 - 134401573 GAAATACATACAAGGAGAGATACCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087869 72 - 276301343 GAAATATATACAAGGAGAGATGTTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=68539.000000 s hg15.chr19_random 182735 961 + 301858 TCCTTCTCCCCCAGGTGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCCCTGTGGTGTCTGAAGGAGAACATGTGGCTCTTCAGTGTCGCTCTCGTCTTGGGTTTAACGAATTCAGTCTGTCCAAAGAAGACGGGATGCCTGTCCCTGAGCTCTACAACAGAGTATTCCGAAACACCGTTTTCATAGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGTCGGGGTTCACACCCACACTTCCTCACTGGGTGGTCAGCACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTCTGGGAT-TCTCCTTGTCCCACCTCCT----GAGTCCCAGAGCTTCTGGTGGGAGTGTCCACCAGCGTCCCATCATCCAGACCCTAACTGTATTTGGGGTAAAAGGGGATTGAATACAGGGAAATGGGTGCtgtggtggaaagaataattgtccccaatgatgactgcattct----------aatccctgcagtctgtgactatttatgttataggggaa----ggcactgaagg-ggaagatggagctcag-------gttgttgagttgaccttgagatggggagacagcctggactgtcctgctgggctcagtgtaatcacaagggtgcacatga-gaggagaaggaagaggggagtggcgattaga------gcagtgcaatggaagtctcca---tcagctttgaaggtgg-aggaaggccatgag---ccatgaatgcaggtggcctatagaggctggaaaagtcaaggaactg---attctcctgggtctccagagggaacgcagccctgcagatgcctt------------gattttagc---cctcaaaaaacagggtccgatttctgtctccagaaacggaaggggtcagtgtgctctctcctgctgccatgcttctgata--attttctacagcaccaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAGATAAGAAAGGACACAAGGAt s mm3.chrX 31742777 919 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGA--GTCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGAGCTTTAGTCA--GTTTCATCATT---------------------ATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT-GTAATACCCATGTATATGTACTTTCTTTTATGAAAGGATTCTTG-AGTTGAAAATAACTCA------AGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAAAAAATTGACATCAGGGTGAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG-GCAGAGACACTCTATTCTTAACACTGGCAGTGATaaaaagactccaagtgccaaggaacgaatgaggcctctagaagat-gaaaggcaaagataatgaaaaatttctagtgatttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggcatgcttcaaa------------atttggatctccagaa----------tgcttttgctccatttaagaacagtatttgtgattattttttctgca--agtgattggaaattaataGAAGGATCTGTATCAATG--------------------GGCAT s rn2.chr1 215634466 914 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGA--GTCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATAGTTTTAGTCA--GTTTTGTCATT---------------------ATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT-GTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATTCCTG-AGTTTAAAATAACTCA------AGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattatagggagacactctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagat-gaaaggcaaaaagaataaataatttctagtgatttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggcttgtttcaga------------attctgatctccagaa----------cacttatactctttttaagaactatatttgtgata--tttttctgca--agtgattgaaaattaataGAAA-ATCTATTTCAATG--------------------GGAAT a score=8764.000000 s hg15.chr19_random 183849 408 + 301858 TTAATTAATTAATTAAAGAAACCAAACAAAGAGAAGGTTGGCTACACCGAGATCAGCAAGGGTGGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTTGATACTCCTCAAACCAGCACCAGAAGCCAGCCTATGGAAGCTGGCACCATGGAGAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATACCTTCTGCCAAGGATTCCAATTCGTCCAAAAGAGATTGAACCAGTCTG-CTAAGAGCCTGGACGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACATAGAAGCAGGAAA------------GACATTAGTTCGAAATAGATACAACAGCCCAAGAGATGAGGCTGAGC s mm3.chrX 118321361 326 + 149996094 CTTA-------------------AAACCTAGAGAAG---AGATGTCCAGAAAGCAGTAGG-CCAGAATGATGAC----TCACCAAAGT---------TTTGGAGAGGACAATGCTCAT-GAACAAGAATGACAAG-TGCTTGATATAAATTTGTATAATAGCG-----------ATTATCAGA-------------------------AGACTTTCT-----CTGTTAACCACACTCACTACTAAATACCTTATTTTTCCAAGCATTACAGTTGATCAAAAGTAGCACAAAGTGACTCATAAAAGAGCCTGG-TATTAAGCTTGTCATGTTTCCTGCTCTCCCCAAACCTGGAAAGGGGCAATGGGATCTATGTTAGAATGTTTCAGA--AGCCACATTCTCACAAGT------------- s rn2.chr1 215635380 304 - 276301343 ATTA-------------------AAAACTGGAGA--------TGTCTGGAAAGCAATAGG------------------TCACCAAAGT---------TTTGGAGGGGGCAATGCTCAT-GAATATGAATCAGGAA-CACCTTACATAAATTTGTATAATAGAG-----------ATAACCAGA-------------------------AGAGTTTGG-----CTGTTAATGACCCTCATGAC-AAATCCCTTATTATTCCAAGGAATATACTTGTTCAAAAGTGGCACAAAGCAACTCA------AAGCTGG-TATGAAGCTTGTCATGTTTCCTGCTCTCCCCAAACTTGGAAAGGGACAATAAGATCTATGGTAGAATGGTTCGGA--TGACACAGTATCACAAGA----------AAT a score=17593.000000 s hg15.chr19_random 184257 2356 + 301858 CCAGCGGCAAGGGAATCAGGAGCTACTAGAGACAGAGGGACAGAGAAGAGGGAGGGAGACAGATGGAAGGACCTGTACCAGGAGTT---ATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGATAAGACACCAGCGAGGGGAAGCCTCACTCATTCTAGGTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAAGTCACAACCTCTCT-TCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAGCACTTCCTTCTG----CACAGAGAGGGGAAGTTTAATGACACTTTGCGCCTCACTGGAGAGCTCCAT-------GATGGG--GTCTCCAAGGCCAACTTCTCCATCGGTCGCATGACGCAAGACCTTGCAGGGACCTACAGATGCTACGGTTCTGTTCCTCATTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTGATTACAGGTGAGAGTGTCTGGACATTATTCTCATTGTCACTGGGACACAGAGTGAAT-------GATCCAC-GACTTGGAGGCCCAGGTGGTTATAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTAATTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGG-AGACACAAGTACAGACCA--GGTGTCATAACAGAGGACAGACACAGGG---------GCCATACAGGGAGTTAGAAAAGACAGAAAGAGTTAAAGGAGACACAGACA-GACATGTGCCAGAGAGAGGTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTG-----TTTTACTTCCACAAAGTGTTCTCTACCAGAAGAACCCAAGGACAC-CCATATTTCTGGCCTGAGTT--------GGGCCCTGTGGCCTC---------AGGCCTT--------CTGGCACCTACAGATGCCGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAG--AGTAATCGTCCCAGGATATCATGGCCC------------CAGAACATCAACCCCTGTATACTGTGTGAACTTGCGGTCCCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAGAGGATCACTGAGAGACACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGGGAGAAAAGAGGGCAGAGAAGTGGAGAGAACAATG----------------GAAGGGAACAGAGAAAAGCACTAAAATTAGAGTCCTGAGGGAGAGGCACAAGGACATAGAAAGATGGAGATGTG-GGGATGAATTGCAGAGATTCCAAAGAGAACTAGAGAGACCGAGAGGCAGAGCAagacagatgatagatggatagatatagatagatgataaataggtagatgatagataataggttatagatacatagatGATGATCGATTCATTCATTGATTAATCGATGATACATAGAGATGATGAAGATGAagatagatagataatacatagagatagagaggcagacaaagagaaatcatagagagagagagatgatacatagatatagataatagatgatttttggatagacaattgatagataaatagattatatatagatatagatgacaggtagagaatttgtagataggcaccagatagataaatagatatatcgatagataatagatagaAATATGCAGAAAGTTATGA----ACAGGACACAAAGTGAGAAACTCAGAATTTAAAAAAAGTAACATCAAGTCAACTAGTCCAAGGAGAGTCAGAG---AGAATAAAACAATCCAAAAAGGGAAA----------ACATATCTAGAGGTgagaaagtgaggtcagagacctagagagacagagaaggtggaaagaggaa-atagacataaagagagatgg-tgtggagggtg-agacagagagagagagCATTAGGCCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGGGAGGGGAGTTGTGACAAGGAAGAACCTCCCTGAGGAAACTGCC-TCTTCTCCTTCCAGGTCTATGTGGGAAACCTTCTCTCTCAGCCCAGCCGCGCCCCATGGTTAAGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTA---TGACATCTACCATCTATCAAGGGACGGGGAGGCTCATGAACTTAGGTTCCCTGCAGTGCCCAAGGTCAATGGAACCTTCCAGGCCAACTTTCCTCTGGGCCCTGCCACCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAGACCTTAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAA s mm3.chrX 118282267 2131 + 149996094 CCAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATAAGTGGGGAAT--GAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAATAG-GCTAAGG-------GTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATAGAG-GACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGGGAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAAATAC-AGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTAGAGAAAGGTAGCCATCT--TGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTGGAGACATAAAGAGTAGAGATAAAGAGAAAGGGGTGAGTCAG---CAAACTTGACATAAATCAAAGAA---TGTGAAATCATTCTACTAATATTCGGGGGTTAGG-ACAGTTCAAA-------TTTTTGGGGACTTCTACTTCTGCAAGACATT-TCTG--AGAAGAG---ATAGATATACTGTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTGCCGAC-----------------GGTTAAAATCC---------------ATGAAAAAATTATTCAAACACACTATGAT------GGCAAAGTAAAAAGAAAAAAAGAAAAAACCCACAGAGTCTTCCAG-------------------TAATAACCA---------GAAAATAATAAAGCAGAAAAATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGA-----TAGATTCAGAG-----ATGGAAAGGGCTGAGAAAATTATAATATGGC-ATGTGTGGGATGAA-----AAAACTACAAAAAG---TGAGAAAGCTGAGTGGAAGAACT---CAAAGTGGAGATGAAGAAATAATGATAGATGTTAGATA---------------------TTTCAAAACAGAGCTGGGGA-------ATCCAGTGCTAGA--------ACACAG------------TGGAGA-----agttcataca------------------ctaagaggaacaagggagaga---agatcat-catggctcttgttcaagg--------ttagcacgcCCCTCCCACATTCATAGAATAT---------------------------TCTGTGGTC--------------TAAAAAGAGAGAT-------TAATAAATAGACATGTA-AAAAAGATAAGACGTAACAGTAAATTAAATGA----------ATTTCAAAAAA-------CAAGT-----------AGTGGAGTAAAATGTTAGAATAAAAAAGTGATGTAAGGGACACAGTATGATAACTTATAAGGACATGGTACAGAGAGA----------AGAGAGAGATAGAGGATGGGTAAATGAAGAAAGAAATGGGAAGATATAGATGACAAAAATGTAAGCAGAGAGAGTGATAGT--------------GAGGAGTGAATG---AGCACGGGT-----------------AAGGAACTAGCCTTCTATCTAAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCT---GCTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGT-ACTGTTCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAA a score=3807.000000 s hg15.chr19_random 192948 138 + 301858 AAAGGTCTCTGATCTTACCCCCACCCTCCAGCCCCTGTTCTCCAGAACTATACTGTGGAGAGTTCCATCAGGATTGTTGTGGCTGGTCTGGTCTTCCTGGCTCTTTTGGCAATGCTGGC---TAAGACCTGGTGGAGACAT s mm3.chr14 11665861 130 - 115844145 AAAAGGCCCATCTCTCCCCTCTCCCCTCCAGAACC--------AGGATCACACAATGGAGAATCTCATCAGGATGGCGATGGCTGTCATGGTCCTCATAGTCCTTT---CGATTCTAGCCATTGAGGCCTGGGGAAGCCAT a score=27161.000000 s hg15.chr19_random 199342 491 + 301858 ---------TTGTGTCATAAGACA------AATTCTAGATAACACGACCAGACCTTCAATTGACATAT---TGTGTTTTTGCTAATAAGGTGGAATTCTATGATGCGAAATAACTATATAGTCTTTTCTACTGGGATTTAAATCATTTTATCTGTTTCTGGCTTAACAGGAA-AAATACAACCATGGAAAATTATGATGATTTATTTAATACGATTGC-TCTATAGTGTTAATAAAACCTATTAGGTATTTTGCATATTACATATCAAGGAGAGTTTGAATCTCAGGTAGAAACAAAAA-AAAATACATCAAAAGTTCCTCATGTG--AGTGCAGAATTCAATCGTCCCGTGCAGGGGTAAGTGAGTCTGAGATGTGTTTTGAGCCTGGCCGTTGCGCATGATGTGAAGTGACAAGTCTAGTCTG-CAGTTTTCAGAAACCCTCATTCCTCCCTTGACTGATTCACCACTTGAACCTCATATGACGTAGAAGAAGCCTACCTATGTCCCCTTCAC s mm3.chrX 31730852 467 - 149996094 ---------TTAGGTCATAAAACACAATTGAATTAGAGTTAAAACG----------CACTTGCCTTATCTCTCTGACTTTTAAACAGAAGTGCAATTTTATTACTCTAAATAACTAATCAATCAGCTAT------AATTACATAATTGTGACT-----TGA---AACTGGAAGGAGCACAGC-----ATAATAATTTTGATTGACACATTAGTTTTGCTTTTATAACATGAATGATATTCATTGAACACATCACGCATAACACCAC-AGGAACCATTGATGCTCAGGTTTAGAAAGGAACAGAGTACATAAAAGGAT-TTAGTATGTTAATCAAG--TTCAAACATTTAGAACAAGAAGGTTTG-GTCCAAGACATAACTCAGTTGTGGTCATAGAAAATGTTGTGTCTGAAGGACTAAAGTCTGAAAATTTTCAGCAAGCTATGATCCTCCTAGACCACAATAAATCAGTGCATCCATCTTGCAGCAAGAGACAGGTTCACA-----GAGCAAC s rn2.chr1 215612594 470 - 276301343 GTTTGAATGTTAGGTTATAAAACA--ATTGAATTAAAGCTAAAATC----------CACTTGTTTTGTTTCTTTGACTTTTAAACAGAAGTGAAATTTTATTATTCTAAATAAGTACATAATTAACCACTTAGGAAATTACATGATTGTACCT-----TGA---AACTGGAATAAGTGTAGC-----ATAATCATTTTGACTGACATATTAGGATTGCTTTTATAACATGAATAATATTCATTGAACACATTACACATAAAACCAC-AGGAGCCATTGACATTCAGATTTAAAAAGCAACAAAATGCATCAAAAGTT-TTAGTATG--AATCAA----------ATTTAGACTAAGAGGGTTTG-GTCCAAGATGAAACTCAGATGTGGTCATGGTAAATGTTGTGTCTGGAGAACTAAAGTCTGAAAATTTTCAGGAAGCTATGGTCTTCCTAGGCCACTGGAAATCAGTagatcccacttgaagccagagacaggaacatg-----ccccatt a score=33766.000000 s hg15.chr19_random 199833 532 + 301858 ATGTTGTGGTCAAT-----GTGTCAACTGC--ACGATCCGGGCCCCTCA-------CCACATCCTCTGCACCGGTCAGTCGAGCCGAGTCACTGCGTCCTGGCAGCAGAAGCTGCACCATGT---CCA-----------TGTCACCCACGGTCATCATCCTGGCATGTCTTGGTGAGTCCTG----GAAGGGAA-----GGAGCACCAGGGTTACACTATGGGCCT-GCAGATTGGGTGTCTCCCCAGCAGAGAGCCATGTTCTGAAGCAAGTGAGTGGTGAGGATGAGTTAAT---------------TTTCAGTCCAGCGT------GGCGCCCAGTGGCTCAGGAGGAAAG---GGTAGGTTGCTGCCGAGAT----GAATAGTTCCTCATGA-TCTTTCT-TTGCAGGGTTCTTCTTGGACCAGAGTGTGTGGGCACACGTGGGTGAGTCCTTCCCCAAATGATGG-GTTGCCATCTTCACCCCAATACAAGTGAATTTTCCGGAAATGGGAGGGAGGCAGCACAGAGGGTGGGCTGATGGGCTGACCA-TGGGAAGGCCTGG-GGGGAGTCTCTCATGAACTAGTAAGAGGAGATCCT s mm3.chrX 31731433 570 - 149996094 aCCTTGTGGCTGAGCATGAGTGTGATCTGTTGGTGAATCTGGCTTCCCGTGGTTT-GCAGCTCCTCTGAGCCTCTCAGGACATCCGGTAGACTTTGTTCTGGC-------TCTGCTCCTTGCCAGCCA-----------TGCTGCTCTGGTTCCTCAGCCTCATGTGTTCTGGTGAGTTCTGCTGAGGATGAAAAGTGTGAAATAACAGGGTAGAATTATCATCTTGGGAGGTGAGAATTGTCCAAAGCAGAAATCCTGGCTTCCATGGAGGGTGTTGGTGC--ATAAGTTCATATAAACAACGTGGGCTCTGATTCCAGTGTTTAGAGGATGGACAGAAACTTCAGGTGTCAGAGGGTCAAGCTACTGTGAAAGG----AGATCTTACATCATGAGGTTTTGTCTTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACGTGGGTGAGTCCGTCCCTAAAACATGGAGTTACGGTC--CATTTCCATAGACGGGTTTTATTCAGACAGGAGA-GCAGGCAGTAT-GATTTTGGGGGGACAGG--GACTGGTGTGTGGGATTGGTGCTGAGTATTT--TGAACTGCCAAGGAAAGACCCT s rn2.chr1 215613176 579 - 276301343 ACTTTGGTGTTGACTGTGAATGAGGTCTGTTGGTAAGCTTTGCTTCCTGTGGTCAAGTATGTACTCTGAGCCTCTCAAGACATCCTGTAAACTTTCTTCTTGC-------TCTGCTTCTTTCCAGCCAAAGCAAAACCATGATGTTCGAGTTCCTAAGCCTACTGTGTTCTGGTGAGTTCTGTTGAGAATGAAAAGTGTGAAATAACAGTGTAGAAATATCATCTTGGGAGGTTGAAATTGTCCCACACAGAAATACTGAGTTCCATAGAAAATATTAGTAC--ATAAGTTCATATTAACAATGTGGGCTCTGGTTCTAATGTTTAGAGGCCAAAAAGAAACTTGAGGTGTCAGA--GTTTGGCTAT--TGGAAGGTGGTAGATCTTTCATCATGAGTTTTTCT-TTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACATGGGTGAGTCCATCCTTAAAACATTGAGTTACCATC--TATCCCAATAGATGGGTTTTGTTCTAACAGAAGA-GTAGGCAATGT-GTATTTTGAGGGGTGGG--GGCCAGTGTGTGTAATTGGTGGTGAGTCTTT--TGAACAAC--AGTTATGTCTCT a score=5526.000000 s hg15.chr19_random 200994 70 + 301858 GAAAT--------GGGGAGAATCTTCTGAGCACAG--GGAGGGAGGGGCAGCTCAACATACTCCTCTCTGAGGC---GGCATC s mm3.chr7 131051127 78 - 134401573 GAAATACATACAAGGAGAGA---TACCGAGCACAACGAGAAGGAGGTGCCGCT--GCCTCCTTATGTCTAAGACCAGGCCACC s rn2.chr1 214087869 75 - 276301343 GAAATATATACAAGGAGAGA---TGTTGAGCACAA---ATAGGAGTTGCTGCT--GCCTCCTTATTTCTAAGACCATGCCAAT a score=46742.000000 s hg15.chr19_random 201064 456 + 301858 TCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTCTGCTCTGCCTGGCCCAGCGCTGTGGTGCCTCAAGGAGGACACGTGACTCTTCGGTGTCACTGTCGTCGTGGGTTTAACATCTTCACGCTGTACAAGAAAGATGGGGTCCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGTTTCCTCATTAGCCCTGTGACCCCAGCACACGCAGGGACCTACAGATGTCGAGGTTTTCACCCGCACTCCCCCACTGAGTGGTCGGCACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTCTGGGCT-TCTCCTTGTCCCACCTCCT----GAGTCCCAGAGCTTCTGGTGGGGGTGTCCACCAGAGTCCGATCATCCAGGCCCCAACTATATTTGGGGTAAAGggggattgaatacaggggaatgggtgctgtgttggaaagaat s mm3.chrX 31742777 430 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGA--GTCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGAGCTTTAGTC--AGTTTCATCATT---------------------ATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT s rn2.chr1 215634466 418 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGA--GTCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATAGTTTTAGTC--AGTTTTGTCATT---------------------ATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT a score=7187.000000 s hg15.chr19_random 201521 51 + 301858 actgtcccc-atcgatggccacattgtaatccttggagcctgtgactatgtt s mm3.chr7 131051656 52 - 134401573 GTGTTCCCCTAATGAAATTCATATTCTCATCCTTAGATCCTATGAATATTTT s rn2.chr1 214088410 52 - 276301343 gtgttcccctaatgaagtccatattctcatccctagagcctatgaatatttt a score=5621.000000 s hg15.chr19_random 201980 100 + 301858 gaacccaggtgaaggacaagttaaaaaaccaaacaagaaggttggctaccctgagatcagcaagggtgcact-----gctgatgccaccaccaggct-ggaaccac----- s mm3.chr7 131191667 103 - 134401573 GATCACAGGTGAAGAACTC--AACAGACTCAGTCAGGAACCTAGCCTCTGCTCAGGCTCTCAAGGGGGAGCTGGAAAGCTGATG-----GCCAGGAT-AGATACAGGAATC s rn2.chr1 57326004 104 + 276301343 GATCACAGGTGAGGATCTA--TAGAGACTCAATCAGGTACCTAACCTCTGCTCAGGCTCTCAAGGGGGATCCTAATAGCTGAGG-----GCTGGGATGAGGAACAGAGATC a score=51581.000000 s hg15.chr19_random 202080 545 + 301858 atagggagggaTCGACAGGA---------AGAGTTGGGGGTGGA------------GGGTgaga-gagagagagagagagagagCACTAGGCCATAGAGCAGGGCAGTGAGTTCTCAGCTCAGGTGGGAGGGGAGC----TGTGACAAGGAAGA------------ACCTCCCTGAGGAAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCGCTTACAGCCCGGCCGGGCCCCACGGTTCGC---GCAGGAGAGAACGTGACCTTGTCCTGCAGCTCCCAGAGCTCCTTTGACATCTACCATCTATCCAGGGAGGGGGAAGCCCATGAACTTAGGCTCCCTGCAGTGCCCAGCATCAATGGAACATTCCAGGCCGACTTCCCTCTGGGTCCTGCCACCCACGGAGAGACCTACAGATGCTTCGGCTCTTTCCATGGATCTCCCTACGAGTGGTCAGACCCGAGTGACCCACTGCCTGTTTCTGTCACAGGTGAGGAAAGCCAATGTCTGTCCCATGTCCTAT---------GGTCCTAGAGC-----CTTAGCTGAGGAGCTTCCTGCTGATGATGGAGAGAAGCATGGACA s mm3.chrX 118325175 567 + 149996094 ATAGAGAGGGAACATGGAGTTGGGTGAGGAGAAGTAAAGTTGGGTAAGAAGGTTGCGTGTGAGAGGAGCGGGAGAGAAGAAGAGCTCTATAAAATATATC---TTATGAAATTATCAAAGCAATCAACAAAAAAGT---------------------------CAGACTTTCTAAGGGACTATGTCTTCT---CTTCCAGGTATATACAAGAAACCTTCTCTGTCAGCCCTGATGGGCCCTGTGCTGATGATGTCAGGAGAGACCATGACCCTGTCTTGCATCTCTGACCATCAGTTTGACACGTTCCATATGTCCAGGGAAGGGGTGCCTCGGGGACAGGGGATGCCTGCAGTGCAGAGCCACAGTGGTAAATTCGAGGCAAAATTCCTTCTTAGTCCAATGATCCAAAAAGGGAACTATAGATGCTATGGCTCTTTCAGGAACGCTTCCCATGTGTGGTCCTCCCCAAGTGACCCCTTGTACCTTCCTGCCAAAGGTAAGACTGTCTCATATATATCTCATGTCCGGTAATTAATGAGATCCTGAGGCTAGGCCATTCCTGAGAACCATCCTACTGATGGCGAGGAAATACTTAAata s rn2.chr1 215647912 552 - 276301343 ATTGAGAAAGAACATAAAGT---------AGAGGTAAGG-----------------GTGTAAGAGGAACTGGGGGAGAAAAGAATGCCATAAAATATACC---TTATGAATTTATCAAAGCA-----TAAAAAAGTACTCTATGTTAAAAAAGAAAAAAGATACAGGCCTTCTCAGTGTCTCTGCAT------CTTTCAGGTGAATACAAGAAACCTTCTCTGTCGTCTGTGATGAGCCCTGTACTGGTG---TCAGAACAGAACATGACCCTGTCCTGCATCTCTAACCATCAGTTTGAAATGTTCCATCTGTCCAGAGAAGGGGTGCCTCAAGGAAAAGGGATACCTGCAATGCAGAGCCACAGTGGTAAATTTGAAGCCAAATTCCTTCTTAGTCCTGTGATCCAAAAAGGGAACTATAGATGCTATGGCTCTTTCAAAAACTCTTCCCATGTGTGGTCATCTCCAAGTGACCCCTTGTACCTTCCTGCCAAAGGTAAGAAAGCCTCATAAATAATTCATGTCCTAAAACTAATGAAATGCTAAGGCTAGGGCGTTCCTGAGAACCATCCTACTGATGGCG-GAAGGTac----aca a score=520.000000 s hg15.chr19_random 202625 15 + 301858 GATGTGGAGAGAAGA s mm3.chrX 118284488 15 + 149996094 GAGCTACAGGGAAGA a score=23190.000000 s hg15.chr19_random 209222 417 + 301858 ttgtatcatcagcacattctattgttattatgaaaactataacggagaaagcaggagaaagctgggtcTCCCGCCTCGTGGGTGCTTGTCCTAAAGAGGTGTTTTATGTGGTTGCCTGGCAACCAAGAAATGAGAGACAAT-CCACAAAGAGGAACTGCTATGGTTAGCTTCTT-ATTGGATTCTCATCTTCCTCCAGGTATCGCCAGACACCTGCATGCTGTGATTAGGTACTCAGTGGCCATCATCCTCT---------------------TCACCATCCTTCCCTTCTTTCTCCTTCATCGCTGGTGCTCCAAAAAAAAAAGTAAGCCTCACGAAGCAGAGGCCAGAGAACTCAGGGCCCTGTGCGGAA-----------GCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACTGGCAGGAAAGTCTCTGGCCCAAGGCA--GGAGCCA s mm3.chrX 31750882 393 - 149996094 ttatattattaatattctatatt-ttattat-aataCTAT-------AGATTAGGAGTATG-------TCCTCCATCATGTCCTTTTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAACAAGCAGGTAG--------GTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653476 382 - 276301343 ----------------------------------------------------agtagtagg-------ttctccATCAAGTCCATT-ATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAACAAGCAGGTGG--------GTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=82193.000000 s hg15.chr19_random 209639 1018 + 301858 GAGGCAGAGCTTTCTAGAGAGAGCACCAGACAACCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGA---------TTGTGAACTGTATCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAA------------------------------------------------GATTCCATGACAGGCAGAAAGTGGGAGATAGAATCAATGGGATGGGAACTGAC---------------------------------------AGCTATTCATGGAATGGGGTCTTGCACTCAGAGAGATGGAATGT---------------------------------------------CTGAG----------------------TCTGGCTGTTGGCAGCTGAGGGACCTCAGGCACCTATGGCCT---CCCCCTGTGTGTTGGTAT-CTGTTCATGAAATGAGGACCCAGAAGTGCCCTCCCAGCT-GTT-TCGATTGCTTCCGTCTCCTACAGATGCTGCTGTAA---TGAACCAAGAGCCTGCGGGACACAGA-ACAGTGAACAGGGAGGTAGGTCCTCCT-AGCCCAGCCTCATGGATACAGTCT--TATTCCCTAATAGTCCTGAAAAATGTGAACACCCTCCCTCACTCAGGATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCATTTTCACACAGAGAAAAATCACTGGCCCTTCTCAGAGGAGCAAGAGACCCTCAACAGATACCAGCGTGTGTATAGAACTTCCAA------ATGCTGAGCCCAGAGCGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGATGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAACCCAGCTTGCCAGCTCTAATGTACCAGCAGCTGGAATCTGAAGGCGTGAGTCTCCATCTTAGAGCATCACTCTTCCTCACACCACAAATCTGGTGCCTGTCTCTTGCTTACCAAT-----GTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCTATTTCACTTGACCCCTGCCCACCTCTCCAACCTAACTGGCT-TACTTCCTAG-TCTACTTGAGGCTGCAATCACACTGAGGAACTCACAATTCCAAACATACAAGAGGCTCTCTCT s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGGAAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGTGGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGG----------AGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTCTGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAA-TGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGG-GTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAAGACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcaggaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga--gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatg----------agccatggattttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTCTACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAA-TATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGG-ATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAAGACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=14230.000000 s hg15.chr19_random 212829 829 + 301858 GGTGAGTCCTGGAAGGGAATCGAG----GGAGGGAGTGCGGGGATGGAGATCTGGACCTGGAGGTAAAGATATGGGCCTAGAGGTGGAGTTATGGGCCTGGAGG---TGGAGTTATGGGCCTGAAGTGGAGATCTGGG-CCTGGAGTGGAGATCTGGG---CCTGGAGTGGAGATAGGGGCCTGGGGTGGAGATATGTGCCTGGAG----TGGAGATCTGGGCCTGGAGTGGAGATATGGGCCTGGGGTGGAGATATGTGCCTGGGGTGGAGATATGGG--CCTGGAGGGGAGATATGGGCCTGGAGGGGAGATGTGGGCCTAGAGGTGGAGTGATGGGCCTAGAAGTGGAGCGATGGGCCTGGAGTGGAGATATGGGCCTGGAGG---TGGAGTTATGGGCCTGCAGTAGAGATATGGGCCTGAAGTGGAGATATGGGCCTGGAGTGGAGATATGGG-CCTAGAGGTGGAGTTATGGGCCCGGAGGTGGAGTTAAGGGCATGAAGTGGAGATCTGGG---CCTGGAGTGGAGATATGATCCTGGAGTGGAGATATGGGCCTGGGGTGGAGATACGGG---CCTGGAGCAGAC-ATACAAGCCTGGAAAGGAGATATGGGCCTGGAGAGGAGATAGAAGCCTGGAGTGGAAATATGGGCCTGGagtggagatatgagcctggagtggatatatgagcctggagttgagataggagcctggagtggagatatgggcctggagtggacttatcagcctggagaggagatATGGGTCTGGAGTGGAGATACGGACCTGGA------GTGGAGATCTGGGCCTGTTGTGTAGATCTAGGCCTGGAGGTAGAGATCTGGGCCTGGAGG s mm3.chr3 30094512 803 - 160674399 GGTCAGCACTGAGAAAAGATCTAGACAAGAGGAGAACCTGAAGATGGGGGT----ACCTGGAGG-AGATGGGTGGACCTGAAGGAGATG--GGGGACCTGGAGGAGATGGAG-----GACCTGGAG--GAGATGGGGGATCTGGAG--GAGATGGGGGAAACTTGGAGGAGATGTGGGGACCTGGAGGAGATGAGGGGACCTGGAGGAAATGGGGA----GACCTGGAGGAGATGAGGGGACCTGGAGGAGATGAGGGGACCTGGAG--GAAATGGGGGAACCTGGAGGATATGGGGGGACTTGGAGGATATGAGGGGACCTAGAGGAG--ATGGTGG------------------GGACCTGGAGGAGATGAGGGGACCTGGAGGAAATGGGG----GGACCTGGAGGAAATGGGGGGACCTGGAGGAGATGGGGGGACCTGGA--GGAAATGGGGGACCTAGAGGAGATGGTGGGGACCTGGA---GGAGATGAGGGGACCTGGAGGAAATGGGGGGGACCTGGAGGAGATGGGGGAACCTGGAGGAGATGGGGGGACCTGGA--GGAGATGGGGGAAACCTGGAGGAGATGGGGGAAACCTGGAGGAAATGTGGGGACCTGGAGGAAATGAGGGGACCTGGAGGAGATGTGGGGACCTGgaagagatgagggaacctggaggagatgaggggacctggaggaaatggggagacctggaggagatgagaggacctggaggagatggggggacctggaggagatggggggacctggaggagatgagaggacctggaggagatggggggacctggaggagatggggggatctgga---ggagatgggg----ggacctggagg a score=17733.000000 s hg15.chr19_random 213801 134 + 301858 GATGGTCCATCATGA-TCTTTCT-TTCTAGGGTTGTTCTTGGTCCAGAGGGCCGGTCCACACATGGGTGAGTCCTTCCCCAAACCTTAGGG-TGTCATCTCCCCACATAAGAGGATTTTCCTGAAATGGGAGGGAAG s mm3.chrX 31731789 137 - 149996094 GATCTTACATCATGAGGTTTTGTCTTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACGTGGGTGAGTCCGTCCCTAAAACATGGAGTTACGGTCCATTTCCATAGACGGGTTTTATTCAGACAGGAGAGCAG s rn2.chr1 215613544 136 - 276301343 GATCTTTCATCATGAGTTTTTCT-TTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACATGGGTGAGTCCATCCTTAAAACATTGAGTTACCATCTATCCCAATAGATGGGTTTTGTTCTAACAGAAGAGTAG a score=6861.000000 s hg15.chr19_random 214525 70 + 301858 GAAAT--------GGGGAGAATCTTCTGGGCACTGGGAGTGAGGGGCGGCTCCACATCCTCCTCTCTAAGGCAGTGCC s mm3.chr7 131051127 75 - 134401573 GAAATACATACAAGGAGAGA---TACCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087869 72 - 276301343 GAAATATATACAAGGAGAGA---TGTTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=68631.000000 s hg15.chr19_random 214595 980 + 301858 TCCTTCTCCCCCAGGTGGTCAGGACAAGCCCTTCCTGTCTGCCTGGCCCAGCGCTGTGGTGCCTCGCGGAGGACACGTGACTCTTCGGTGTCACTATCGTCATAGGTTTAACAATTTCATGCTATACAAAGAAGACAGAATCCACGTTCCCATCTTCCATGGCAGAATATTCCAGGAGGGCTTCAACATGAGCCCTGTGACCACAGCACATGCAGGGAACTACACATGTCGGGGTTCACACCCACACTCCCCCACTGGGTGGTCGGCACCCAGCAACCCCATGGTGATCATGGTCACAGGTCAGAGGCTTTCCGTCTGGGCT----TCTCACTGTCCCACCTC-CTGAATCCCAGAGCTTCTGGTGGGGCTGTCCGTCAGGGTC-CCATCACCCAGGCCCTGGCTGTATTTGGGGTCAAGGGAGATTGAATACAGGGCAAATGGGTGCtgtggtgggaagaataactgtccccaatgatggctacattgtaatccctggagcctgtgactatttatgtt----atagggcaggggactgaaggg----gaaggtggagctc-----------aggttgttgatgagttgaccttgagatggggagacagcctggactgtcccactgggctcagtgtaatcacaagggtccgcgtg--agaggtgg--aggaagaggggagtggggattagagcagtgtagtgggagggagacgctatcagccactgcgggctttgaaagtgg-aggaagaccactagt--cacagaatgcaggtggcctctaagggctgga--gaagtcaggagaactgattcgctgattctccagagggaacgcagccctgtagacgccttgat---ttcagcacagggagaactggatccaatttctg-tctccagaagtggaaggggtcagtgtgttctctcctgctgccatgtttgtggta--attttctgcagcagcaacaggaaaccaacacaGGAACCCAGGTCAAGGACAAGTTAGGAACCCAGGTCAAGGA s mm3.chrX 118320440 941 + 149996094 TCCTCTTCTTGCAGGAAGCCATGATAAACCATTCCTATCTGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAGCTGTACAAAGAAGAAGGGTCTCCAAACCATCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACAACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGAGTCCAT--ATTTGGACTATCATTTCATGCCCCCGATTCTCCCAACCCTAGAAATTCCAGAAAGAGCTTTAGTCAGGTTCATCATTA------------------------TAGAGGAATGTTCAACAAAGAA-AATTGAATATTATGCTGGGCATAAT-ATAATACCCATGTATA-------TGTACTTTCTTGTACTAAAGGATTCTTGGGTTTAAAATAACTCAACGAAAAATTGGGCTTTGAAGATGGATATTTGAACCCAGAGAAGGTATCAAAAAATTGACATCAGGGTGAGAGACTA-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTCAGTATGAAAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG----GCGGAGACACT-----CTATTACTAACACTGGCAGTGATAAACAGACTccaagtgccaaggaatgaatgaggcctctagaagatgaaaggaaaagataatgaaaaatttctagtgatttgagcagtgacatgtccctgaagaaacattc-----tttatgacattt-agcttgcttcaaaattcggatctccagaa----------tacttttactccttttaagaacagtatt-gtgattattttttctgca--agtgattggaaattaataGAAGGATCTATATCAATGGGTATCTTAAAACCTAGAGAAGAGA s rn2.chr1 215634466 929 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGAGTCCAT--ATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATAGTTTTAGTCAGTTTTGTCATTA------------------------TAGAGAACTATTCAACAA------------TACTGTACTGGGCACAAT-GTAGTACCCATGGACA-------TGCACTTTCTTGTACTTAAGGATTCCTGAGTTTAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattat---agggagacact-----ctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagatgaaaggcaaaaagaataaataatttctagtgatttgagaagtaacatatccctgtagaa-catttatttatgtatgccattttggcttgtttcagaattctgatctccagaa----------cacttatactctttttaagaactatatttgtgata--tttttctgca--agtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAAAAACTGGAGA----- a score=26132.000000 s hg15.chr19_random 215803 356 + 301858 AGATCAGCAAGGGCAGGATGCTGATGTTACCACCAGGCTCCATCCACATAGGAAGGGGTTGAT-GCTCCTGGAACCAGCACCAGGGGCCACCCTATGGAAGCTGGGGCCATGGAGAAGGCACAGACATGGCAGGAGAGGCTCCCAATCCC-CATCAGGAACAGGGT---GTGTGGTCACTGATGTCTGTCTTACTGATGAGTTGATACCACCTGCCAGAGACTCCAATTTGTTCA---AAAGAGATTGATTCAGGC---TGCTAAGAG---CCTGGACATGCAGCCTGTC--CTCTTCCACCCCCATATAAACAGCAGGAAAGAGATTAGTGGGAAACAGATACAACAGCC-----CAAGAGATGAGGCTGTCTTCA s mm3.chr7 131052389 347 - 134401573 AGACCAGTATGGCCAGGGTACTGATGCTGTCATTGTGTT-----------GAGAGGAGGTGATGGTTCACTGATCTAGAATCA-TGGCTGCCCTGTTTGAGCTGGGATCACAGACAAGCTCCAGACAGACCAGTAGACA----CAGTCCAGGATCAGGAAGGAGACA--GAAAAGCTCCTGTCAGCTGCCTTACTTCTAA---GACATAGCCTGATAGGGACTCTACTTTTTTTTCCAAAAGAACATGA--CAGGGCATGACTAAAGGGCAGACAGAAGCCCAGCATTTCATATTTTCTACCCTCATCCATCATAGAAAATGGAAGTCTGTGGTAAATGAACAACACAGTTACTTGTGTGGGATAA-------CTCT s rn2.chr1 214089141 342 - 276301343 AGAACAGTATGGCCATGATATTGATGATGTCATTAGGTT-----------GAGAGGAGGTGATGGTTCATGGATCCAGAATCA-TAGCTACTTTGTTTGGGCTAGGATCACAGACAACCTCCAGACAAACCAGTTGAAA----CAGTCCAGGATCAGGAGGGAGACATAGGAAAGCTTCTGTCTGCTGCCTTACTGCTAA---GACATAGCCTTCTAGGGATTCCATTTTTTTCT---AAAGGGCATGA--AATGG---ATCCAAAGGGCACCCTGAAGCCCAGCATTTTATATTTTCTACCCTCATCTATCATAGAAAATGGAAGTCTGTGATAA-TGAAAGCTACAGTTACTTGTGAGGGACAA-------CTCC a score=18157.000000 s hg15.chr19_random 216159 2501 + 301858 CAGTGGCAAGGGAGTCAGGGGCTACTGGAGACAGAGGGACAGAGAAGAGGGAGGAAGACAGATGGAGGCACCTGCACCAGGGGAT---ATGGGCACAG-AAAAGACACGGAGATGCAGAGAGGGAGGAGAGAGACAGACACGGGGAGGGGAACCCTCACTCATTCCAGGTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCACAA-CTTCTCTTTCTAGGAAACCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGGAGAGAGAGTCATCCTGCAATGTTGGTCAGATATCATGTTTGAGCACTTCTTTCTG----CACAAAGAGTGGA-------------TCTCTAAGGACCCC----TCACGCCTCGTTGGACAGATCCATGATGGGGTCTCCAAGGCCAATTTCTCCATCGGTTCCATGATGCGTGCCCTTGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACACCCCCTATCAGTTGTCAGCTCCCAGTGATCCCCTGGACATCGTGGTCACAGGTGAGAGTGTCTAGACATTGTTCTCATTGTCACTGGGACACAGAGTGAAT-------GATCCAGGACTTGGAACCCCCAGGTGGTCATGAGGAAGATAAGTGTGGGATTCTTATGGAAAGAGAGTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGG-AGACATAAGTACAGAACA--GGTGTCATAACAGGGGACAGACACAG-GGGCCATACAGGGAGGTAGAAAAGAGAGAAAGAGGTAAAGGAGACACTCAGACAGACAGACATGTCCCAGAGAGAGGTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTG-----TTTTACCTCCACAAAGTGTTTCTACCAGAAGAACCCAAGGACAC-CCATATTTCTGACCTGAGTT--------GGGCCCTGTGGCCTC---------AGGCCTTG--------TGCCACCTACAGATGCCGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAG--AGTAATCATCCCAGGATATCATGGCCC------------CAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTCCCCAGACTGGATTCTGAGGCTCATATTCCAAATAATCCCACATATGATAGGATCGCTGAGAGACACAGAGAAAAATCAGGGACACCAAAAAGCAAAGACATAAACACACACAAAATGAGCCAGAAGAAGGAGATTAAGAGATTCACAGACACATAAAAAGAAAGAAAAGAGGGCAGAGTGGAGAGAATGATGGAAAGG-----------AGGAGAGAAAAGCCCCAAAATCAGAACCCTGAGGGAGGGACACAAAGACAGAGAAAGATAAAGATGTGG---GGATGGATTGCAGAGATTCCAAATAGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGACGGagagagagagatgatagatggatagata------gacgtagatagatgataaataggtagatgatagataatggattggttatagatacatagatgatgactgatagatgatacatagagatgatgatgatgacgat-gatgatgatagacacatagat---atatacatagatgatacataaatagagacagagaggcagacagagaggtaatagagagagagatagatgatacatatatagataatagatgattgatggatagatagacagatagacaattgatagagagatagataagtgatacataaatatagatgatagataatttgtagatagacacaaaatagataaatagatagatcgatagataatagatagaAATGTGCAGAAAGTTATGAACAAGACAGAAAGTGAGAGACTCAAAATTAAAGAAAAAGGAAGATCAAGTCAACCAATCCAAGGA---GGGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACATACCTCAGGGTGGGGAAGTGAGGTCATAGACCTagagagacagaaaaggtagaaggaggaaacagatatgaagagagatggggtggagagtgagagagagagagagagCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGGAAACTGCC-TCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCAAGGTTCAGGCAGGAGAGAGCGTGACCTTGTCCTGTAGCTCCCGGAGCTCCTA---TGACATGTACCATCTATCCAGGGAGGGGGGAGCCCATGAACGTAGGCTCCCTGCAGTGCGCAAGGTCAACAGAACATTCCAGGCAGATTTCCCTCTGGGCCCTGCCACCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTCACTCTCCCTACGAGTGGTCAGACCCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGAAAAGCCCATATCTCTCTCATGTCCTATG---------ATCCTAAATCCTTAGCTAAGGAGCTTCCTGCTGATGATGGAGA-AAAGCATGG-ACAGATGCAGAGAGAAGA s mm3.chrX 118282268 2235 + 149996094 CAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATAAGTGGGGAAT--GAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAA------TAGGCTAAGGGTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATAGAGGACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGG---------GAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAAATAC-AGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTAGAGAAAGGTAGCCATCT--TGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTGGAGACATAAAGAGTAGAGATAAAGAGAAAGGGGTGAGTCAGCAAACTTGACATAAATCAAAGAA---TGTGAAATCATTCTACTAATATTCGGGGGTTAGG-ACAGTTCAAA-------TTTTTGGGGACTTCTACTTCTGCAAGACATTTCTG--AGAAGAG---ATAGATATACTGTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTG------------------CCGACGGTTAAAATCCA--------------TGAAAAAATTATTCAAACACACTATGAT------GGCAAAGTAAAAAGAAAAAAAGAAAAAACCCACAGAGTCTTCCAG-------------------TAATAACCAGAAAATAATAAAGCAGAAA------AATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGATAGATTCAGA---------GATGGA---AAGGGCTGAGAAAATTATA-ATATGGCATGTGTGGGATGAAAAAACTACAAAAAG---TGAGAAAGCTGAGTGGAAGAACTCAAAGTGGAGATGAAGAAATA---ATGATAGATGT-TAGATATTTCAAAACAGAGCTGGGGAATCCAGTGCTAGA----ACACAGTGGAGAagtt-------catacactaagaggaacaaggga------gagaagatcatcatggctcttgttcaaggttagcacgcCCCTCCCACATTCATAGAATATTC-----------------------------TGTGGTCTAAAAAGAGA-------------------------------GATTAATAAATAGACATGTAAAAAA--------------GATAAG----ACGTAACAGTAAAT--TAAATGAATTT--------CAAAAAACAAGTAGTGGAGTAAAATGTTAGA------ATAAAAAAGTG-----------------------ATGTAAGGGACACAGTATGA--------------------TAACTTAT--AAGGACATGGTACAGAGAGAA------------GAGAGAGATAG--------AGGATGGGTAAATGA------------AGAAAGA---AATGGGAAGATATAGATGACAAAAATGTAAGCAGA-------GAGAGTGATAGTGAG----------------------------GAGTGAAT--------------------GAGCACGGGTAAGGAACTAGCCTTCTATCTAAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCTG---CTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGT-ACTGTTCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAAAGTATAGTAGAGAGCTACAGGGAAGA a score=3404.000000 s hg15.chr19_random 218767 81 + 301858 AGGCAGATGGAGAAAGCGGTCAGGACAGACCCAGAGAAGGGGAGACTGGGCTTAGTTTGGGGAGATCAGAGGTTCCCTCAG s mm3.chrX 118284867 81 + 149996094 AGGCAGACATAGAAATGGGTCAGGACAGACTCTTGGTGGATAAGTTTGGGGTCAATCTGTGCAGGTCAGAGATACTCTCAG a score=27749.000000 s hg15.chr19_random 221595 490 + 301858 AGA-GGATCCCAAGACTCCCAGGGTCCAACATTAGATAACAGA----GTGTTGGCCATGAACCAACCTCAAAGA--TTTCCATTGAGTAGAGGACAAGCACCCTCATT-------TCCTCACATCTCTCCTGTC-----CCATGTTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACAGAACCAAGCTCCAAATCTGGTGAGTAAAGGACCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTGGAAGCC---TTGGATGCAAGCGTTGGCTCAA--ACCTCCCAGCTCTGTGAATGAGGGCCTGTCTTCCACCATCTCTGAACTCCAGACACTCCAACAGTGAAAGGGATCT--------AGGGCCACCAAAGGGCTCAGCGAAGTCTCTTAACCTTTAATGTCCTGCAGGTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAGGAAAAATGCAGTGTTTTTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCT s mm3.chrX 118326800 488 + 149996094 AGG-GCATCTTATAACTTTAAATGCTCAGGACTAAGTAGTGAGGTAGGTACTGGTCATGGTCCAATCTCAAAGGACATTCCATC-AGAGGATGACAGACAGTGCCACTGACCAGCTGTTGTTCCCTTTCCTGTCTGTCTCCTT-CTCTACTAAATTCA-CAGGAAACTGTCCTGCATACACAGAAGCAGATACCAAAACAAGTGAGTAAATGACTCCACTTCTCT---CTTGTAAAAACATGGT--TACCAAAACCTCTTTGGGTTCATGTTTTGGCTCCATTGCCTCAATGCTCTGTAGTCTTAGCCTGGTCATCTCCATTCTCTGAATCTTAAACTCTGAAACATCGAAGGTTGTTTAGGAGCAGAGGAGCAGTGTGGACCCTCTAGGGACGACTTGTCTCTCAC--TCCTGAACCTAAGATCTCCTTTAA-TTGAAAAAAAGA--GTAAATTTTACTCTCTTCCCCAAAACAATGGATG---------------ACTCCT-----GAAGAGAAGGTGAT s rn2.chr1 215648991 446 - 276301343 ATACACATCCTATAACTTTAAGTGCTCAGCACTGAGTAGTGAAATAGGCATTGTTTACTGTCCATACCCAAAGAACGTTTCATA-AGAGGATGACAGACAGCATTACTGATCAACTCTTGTTTCACCTTCTGTC-----CCAT-TTCTAATAAATTTATCAGGAAATTGCCCTTCATGCACAGAAGTAGATTCCAAAAACAGGAAGTAAATGATTTCTCTTCTCT---CATGTAGAAACATGG---GGCCAAAACCTCTTTGGGTTCATGTTTTGGCTCATCTACCTCCAGGCTCTGTAGTCTTAACCTCATCATCTCCATTTTCTGATTCTTAAACTCTGAAATATCAAAGGTTGTTT--------ATGAACAGTATGGAACTTCTAGGGACTACTCATGTCTCAC--TTCTCCTCCTAAAATC-------------------------------TACTGTTTTTCCTAAAACAATGGAT-----------------CTCCT-----GAAGAGGAAGTGAT a score=3911.000000 s hg15.chr19_random 222085 39 + 301858 GGGGACTTGAGAGAGGGAAGGGA---AGGGAACATCTCATGA s mm3.chrX 118327288 42 + 149996094 GTGGCCTTTAAAAGGGAAGCAGACAGAAGGAATATTTTATAA s rn2.chr1 215652744 42 - 276301343 AGGACCTTATAAAAAGAAATAGACAGAAAGAATGTTTTATAA a score=30217.000000 s hg15.chr19_random 225946 335 + 301858 ttgtcctAAAGAGACGCTGTATGTGGTTACCTGTGAATCAAGAAATGCAAGACAAT-TCATAAAGAGGAACTGCTATGATTAGCTTCTT-ATTGGTGTCTCCTCTTCTTCCAGGTAACCTCAGACACCTGCACATTCTGATTGGGACCTCAGTGGTCAAAATCCCTT---------------------TCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAA-----------GCAGGATGGGAGCACACGGGTGTGTGTTCCTCACCAGCAGGATGGTCCCTGGCCCAAGACAGGAGCCACA s mm3.chrX 31750951 324 - 149996094 TTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTT-CCCAAACAGAATAAGTCTCAGAAA--------CAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653502 356 - 276301343 -TATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTT-TCCAAAAAGAGTAAGTCTCAGAAA--------CAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=86553.000000 s hg15.chr19_random 226281 1021 + 301858 GAGGCAGGACTTTCTAGAGAGAGCACCAGATTCCCTTCCCCTGCCTTCAGCTCACAGACCATTGCCT-GATTCTGAA--------CTGTATCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAG-----------------------GT-------------------------TCCATGACAGGCAGAAAGTGGGAGATAGAA-----------------------------------------------------------------TCAATGGAATGGGACCT-------CAGAGC-----------------------------------TATTCATGGGATGGGTCCTTGAACTCAGAGAGATAGAATGTCTGAGTCTGCTGT-TGGCAACTGAGGGACCTCAGGCACCTATGGCCT---CCCCCTGTTTGTTGGTAT-CTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCT--CTTTTGTTGACTTCCGTCTTCTACAGATGCTGCTGTAA---TGGACCAAGAGCCTGCAGGGAACAGA---AGTGAACAGCGAGGTAGGTGCTCCTCGGC---CCAGCCTCGTGGCTAGTGT--TATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGATTCTGATGAACAAGACCATCAGGAGGTGTCATACGCATAATTGGAACACTGTGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCATGTACATAGAACTTCC-AAATGCTGAGCCCAGATCCAAAGTTGTCTTCTGTCCACGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACTGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGG--CATCGCTCTTCCTCACACCACAAATCTGAATGTGCCTCTCACTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAAAAAACACACTCCTTTGCTTAGCCCACAGTTCTCCATTTCACTTGACCCCTGCCCACCTCTCCAACCTAACTGGCT-TACTTCCTAG-TCTACTTGAGGCTGCAATCACACTGAGGAACTCACAATTCCACACATACAAGAGGCTCCGTCT s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGGAAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGTGGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG--------------TCTGCTCTGTGGCAGGTGAGG----------AGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTC-TGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcaggaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga--gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggca-catttctgagtctgttttgtggtaggtaatg----------agccatggattttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTC-TACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=638.000000 s hg15.chr19_random 229526 20 + 301858 GTGGAGATATAGGCCTGGAG s mm3.chr2 169689320 20 - 181423755 GTGGAGACAGGAATATGCAG a score=6545.000000 s hg15.chr19_random 229546 487 + 301858 GTGGAGTTATGGGCCTGGAGTGGAGATCTGGGCCTGGAGTGGATATATGGGCCTGGAGATGGAGTGATGGGCCTA-GAAGTGGAGATCTGGGTCTGGAGTGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTGGAGTGGAGATCTGGGCCTGGAGTGGAGATAGGAACCCGGAGGGGAGATAGGAGCCTGGAGTGAAGATATTGGCCTGGGATGGAGATATGGGCCTGGAGTGGAGACATGGGCCTGGAGGTGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTAGAGGTGGATATCTGGGCCTGGAGTGGACATAtgggcctaggatggagatatgggcttggggtggagatatgggcctggattggagatatgggtctagggtggaaatattggcctggagtggagatatgggcctggagtggagatatgggcttggggtggggataggggcctggggtg----cggatatgggcc-tggaggctgg s mm3.chr2 169688940 467 - 181423755 GTGGAGACAGGAATACGCAGTGGACACAGGAATACGCAGTGGACACAGGAATATGCAG-TGGAG--ACAGGAATATGCAGTGGAGACAGGAATACGCAGTGGACACAGGAATACGCAG-TGGACACAGGAATACGCAGTGGAGACTGGAATATGCAGTGGAGACAGGAACACGCAGTGGAGACAGGAATACGCAGTAGAGACAAGAATACGCAGTGGACACAGGAATACGCAGTGGACACAGGAATACGCAG---------------TGGAGACAGGAATAC-------GCAGTGGACACAGGAATACGCAGTGGACACAGGAATATGCAGTGGAGACAGGAATACGCAGTGGACACAGGAATACGCAGTGGACACAGGAATACGCAGTGGACACAGGAATACGCAGTGGAGACAGGAATATGCAGTGGAGACAGGAATACGCAGTGGACACAGGAATACGCAGTGGACACAGGAATACGCAGTGGAGACTGG a score=5756.000000 s hg15.chr19_random 230920 65 + 301858 GGGGAGAATCTTCTGAGCACTGGCAGGGAGGGGCGGCTCCACATCCTCCTTTCTAAGGTGGCGCC s mm3.chr7 131051140 62 - 134401573 GGAGAGA---TACCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087882 59 - 276301343 GGAGAGA---TGTTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=71303.000000 s hg15.chr19_random 230985 962 + 301858 TCCTTCTCCCCCAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCGCTGTGGTGCCTCGAGGAGGACATGTGACTCTTCTGTGTCGCTCTCGTCTTGGGTTTACCATCTTCAGTCTGTACAAAGAAGATGGGGTGCCTGTCCCTGAGCTCTACAACAAAATATTCTGGAAGAGCATCCTCATGGGCCCTGTGACCCCTGCACACGCAGGGACCTACAGATGTCGGGGTTCACACCCACGCTCCCCCATTGAGTGGTCAGCACCCAGCAACCCCCTGGTGATCGTGGTCACAGGTCAGAGGACTCATGTCTGGGCT----TCTCCTTCTCCCACTTC-CTGAATCCCAGAGCATCTGGTGGGGGTGTCCACCAGGGTCCAATCATCCAGGCCCTGACTGTATTTGGTGTCAATGGGGATTGAATACAGGGGAATGGGTGCTGTGGTGGAAAGAGTAACTGTCGGCAGCatggctatattgtaat-ccttggagcctgtgactatttatgttatagga--catggg---------actgaaggggaagatggagttc------------------------aggttgttgatgagttgaccttgagatggggagacga-cctggactctcccactgggctcagtgtaatcacaagggtccacatga-gaggaggaggaagaggagagtggggattagagcagc-gtagtg-ggagggagagtccaccagccactgcgggctttgaaagtggaggaaggccagaagccacggaatgcaggtggcctttaggggctgga----gaagtcaatggaactgattctcccgagtctccagagggaatgcagccctgcagatgccttgattg--tagcccaggaagaacagggtctgatttctg-tcaacagaa-----gtgtTCTCTCCCGCCGCCGTGTTTGTGATA--ATTTTCTGCAGCAACAACAGGAAA-CAACACAGGAATCCAGGTCAAGGACAAGTTAAAAAACCAAACAAGAG s mm3.chrX 31742777 938 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGAG--TCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGAGCTTTAGTCA--GTTTCATCAT---------------------TATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGG------------------------CATAATGTAATACCCATGTATATGTACTTTCTTTTATGAAAGGATTCTTGAGTTGAAAATAACTCAAGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAAAAAATTGACATCAGGGT-GAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG-GCAGAGACACTCTATT-CTTAACACTGGCAGTGA---Taaaaagactccaagtgccaaggaacgaatgaggcctctagaagatgaaaggcaaagataatgaaa---aatttctagtgatttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggcatgcttcaaaatttggatctccagaatgcttttgctccatttaagaacagtatttgtgattattttttctgca--agtgattggaaattaataGAAGGATCTGTATCAATGGGCATCTTAAAACCTAGAAAAGAG s rn2.chr1 215634466 928 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGAG--TCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATAGTTTTAGTCA--GTTTTGTCAT---------------------TATAGAGAACTATTCAACAA-----------TACTGTACTGGG------------------------CACAATGTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATTCCTGAGTTTAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgat-gggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattatagggagacactctact-gctaacaatggcattga-----aaaagtctccaagtgcccaggaataaatgaggtctctagaagatgaaaggcaaaaagaataaat---aatttctagtgatttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggcttgtttcagaattctgatctccagaacacttatactctttttaagaactatatttgtgata--tttttctgca--agtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAAAAACTGGAG----- a score=2872.000000 s hg15.chr19_random 231947 74 + 301858 GGTTGGCTACCCTAAGGTCAGCAAGGGTGCACT-----GCTGATGCCACCACCAGGCTG-GAGCCGCATAGGGAGGGATC s mm3.chr7 3657602 66 + 134401573 CCTAGCCTCTGCTCAGGCTCTCATGGAGGATCTAGGGAGCTGATG-----GCCAGGATG-GATAC--------AGGAATC s rn2.chr1 57308738 67 + 276301343 CCTAGCCACTGTTCAGGCTCTCATGGGGGAGCTTAGTAGCTGAGG-----GCTGGGATGAGGGAC--------AGGGATC a score=1223.000000 s hg15.chr19_random 232021 97 + 301858 CACAGGGAGAGTCGGGGGTGGAGGGTGAGAGAGAGAGAGAGCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGGGAG---------CTGTG s mm3.chr10 51458279 94 + 130738012 CATAGAGAGAGAAGAGAGGGGAGGATGGGAGA---------CATGAAGAAAGAGATAGGAAGATGGAGATCACAA---AAATGTAAGCAGAGGGAATAATACTGAG a score=50446.000000 s hg15.chr19_random 232118 424 + 301858 ACAAGGAAGA------------------------------ACCTCCCTGAGGAAACTGCCTCTTCTTCCAGGTCTATTTGGGAAACCTTCACTCTCAGCCCAGCCGGGCCCCACGGTTCGC---ACAGGAGAGAACGTGACCTTGTCCTGCAGCTCCAGGAGCTCATTTGACATGTACCATCTATCCAGGGAGGGGAGGGCCCATGAACCTAGGCTCCCTGCAGTGCCCAGCGTCAATGGAACATTCCAGGCTGACTTTCCTCTGGGCCCTGCCACCCACGGAGGGACCTACACATGCTTCGGCTCTCTCCATGACTCACCCTATGAGTGGTCAGACCCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAGCCCATGCCTGTCCCATGTCC---------TGTGATCCTAGAGC-----CTTAGCTGAGGAGCTTCCTGCTGATGATGGAGAGAAGCATGGACA s mm3.chrX 118325298 444 + 149996094 ACAAAAAAGT---------------------------CAGACTTTCTAAGGGACTATGTCTTCTCTTCCAGGTATATACAAGAAACCTTCTCTGTCAGCCCTGATGGGCCCTGTGCTGATGATGTCAGGAGAGACCATGACCCTGTCTTGCATCTCTGACCATCAGTTTGACACGTTCCATATGTCCAGGGAAGGGGTGCCTCGGGGACAGGGGATGCCTGCAGTGCAGAGCCACAGTGGTAAATTCGAGGCAAAATTCCTTCTTAGTCCAATGATCCAAAAAGGGAACTATAGATGCTATGGCTCTTTCAGGAACGCTTCCCATGTGTGGTCCTCCCCAAGTGACCCCTTGTACCTTCCTGCCAAAGGTAAGACTGTCTCATATATATCTCATGTCCGGTAATTAATGAGATCCTGAGGCTAGGCCATTCCTGAGAACCATCCTACTGATGGCGAGGAAATACTTAAata s rn2.chr1 215648005 459 - 276301343 -TAAAAAAGTACTCTATGTTAAAAAAGAAAAAAGATACAGGCCTTCTCAGTGTCTCTGCAT---CTTTCAGGTGAATACAAGAAACCTTCTCTGTCGTCTGTGATGAGCCCTGTACTGGTG---TCAGAACAGAACATGACCCTGTCCTGCATCTCTAACCATCAGTTTGAAATGTTCCATCTGTCCAGAGAAGGGGTGCCTCAAGGAAAAGGGATACCTGCAATGCAGAGCCACAGTGGTAAATTTGAAGCCAAATTCCTTCTTAGTCCTGTGATCCAAAAAGGGAACTATAGATGCTATGGCTCTTTCAAAAACTCTTCCCATGTGTGGTCATCTCCAAGTGACCCCTTGTACCTTCCTGCCAAAGGTAAGAAAGCCTCATAAATAATTCATGTCCTAAAACTAATGAAATGCTAAGGCTAGGGCGTTCCTGAGAACCATCCTACTGATGGCG-GAAGGTac----aca a score=648.000000 s hg15.chr19_random 232542 13 + 301858 GATGCAGAGAGAA s mm3.chr10 51458823 13 + 130738012 GCTACAGAGAAGA a score=3590.000000 s hg15.chr19_random 236486 62 + 301858 ACGACTGTGG-AGAGACGGAGAGCACTCTGGGTACACAGGAAACTAA-GGAGGAACAAGGAGCG s mm3.chr19 7823016 62 - 61093376 ATGGATGTGA-GGAGACAAAGGGATGTGAGGAGACACAGGGATGTGA-GGAGACACAGGGAGTG s rn2.chr1 10387028 62 - 276301343 AGGGGTGTGATGGACACACAGGGGTGTGATG-GACACAGGGACGGGATGGAGACAC-GAGTGTG a score=289.000000 s hg15.chr19_random 237258 33 + 301858 atgttctctgattattttgagaactataactga s mm3.chrX 118328455 29 + 149996094 ATATTCTGTGTTAAT----AGTATAATAATATA a score=899.000000 s hg15.chr19_random 237291 39 + 301858 gaaagcaggagaaagctgggtatcctgccatcggggaac s mm3.chrX 118328484 32 + 149996094 AATAGAAGTAGTAGGCTCTCCATCTTGTC-------CTT s rn2.chr1 215653470 32 - 276301343 agtaagagtagtaggttctccATCAAGTC-------CAT a score=30811.000000 s hg15.chr19_random 237330 334 + 301858 ttgtcctAAACAGATGTTGTATGTGCTTAGCTGGCAACCAAGAAATGAGAGACAATCCATAAAGA--GGAACTGCTATAATTAGCTTCTTATTGGATTCCCACCTTCCCCCAGGTATCCGCAGACACCTGCACATTCTGATTGGGACCTCAGTGGCTATCATCCTCT---------------------TCATCATCCTCTTCTTCTTTCTCCTTCATTGCTGCTGCTCCAACAAAAAGAGTAAGTCTCACGAAGCAG-AGGTCAGAG--AGCTCAGGACCATGTGGGGAAGCAGGATGGGAGCACACTGGTGTGTGTTCCTGACTGGCAGGATGGTCCCTGGACCAAGGCAGGAGCCACA s mm3.chrX 31750951 324 - 149996094 TTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAACAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653502 356 - 276301343 -TATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAACAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=86792.000000 s hg15.chr19_random 237664 1021 + 301858 GAGGCAGGGCTTTCTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCT-GATTCTGAA--------CTGTATCCTCACGTCCCCTGCAGCCACTGACATCCAGGAGAAG-----------------------GT-------------------------TCCATGACAGGCAGAAAGGG---------------------GAGACAGAATCACTGGGATGGGAACTCAGAGCTATTCATGG-------GATGGGTCCTTGA--------GCTCAGAGAGATAGA----ATGTC---------------TGGGTCTGGCTGATGA---------------CAGCTGAGGGAC-------------------CTCAGGCACCTACGGCCTCCCGCTGTGTGTTGGTGTCTGCTCAT-------------------GAAATGAGGACCCAAAAGTGCCCTTCCAGCT-GTT-TTGATGACTTCTATCTCCTACAGATGCTGCTGTAA---TGGACCAAGAGCCTGCCGGGGACAGA-ACAGTGAACAGGGAGGTAGGTTCTCCTCAGCCCAGCCTCATGGATTGAGTCTCA--TTCCCTAATAGTCTTGAAGAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGATCAAGACCCTCAGGAGGTGACATATGCACAGTTGGATCACTGCGTTTTCACACAGACAAAAATCACTTCCCCTTCTCAGAGGCCCAAGACACCTCCAACAGATACCACCATGTACATGGAACTTCC-AAATGCTAAGCCAAGATC----ATTGTCTCCTGCCCATAAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCTAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGG--ATCGCTCTTCCTCACACCACAAATCTGAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAGACACACTCCTTTGCTTAGCCCACAATTCTCTATTTCACTTGACCCCTGCCCACCTCTCCAACTGAACTGGCT-TACTTCCTAG-TCTACTTGAGGCTGCAATCACACTGAGGAACTCACAATTCCAGACATACAAGAGGCTCCCTCT s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGGAAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGTGGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGG-----AGCTATGGGTT--TTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTCTGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcaggaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga--gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatg-----agccatggatt--ttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTCTACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=1496.000000 s hg15.chr19_random 240878 88 + 301858 GAAGGGAATAGAGGGAGGGAGCGCGGGGAT-----GGAGATCTGGGCCCAGAGGTGGAGATATAGG-CCTGGAGGTGGAGTTATGGGCCTGGAG s mm3.chr3 30094554 90 - 160674399 GATGGGGGTACCTGGAGGAGATGGGTGGACCTGAAGGAGATGGGGGACCTG--GAGGAGATGGAGGACCTGGAGGAGATG--GGGGATCTGGAG a score=14306.000000 s hg15.chr19_random 240966 844 + 301858 TGGAGATCTGGG--CCTGGAGGGGATATATGGGCCTAGAGATGGAGTGATGGGCCTAGAAGTGGAGATCTGGG-TCTGGAGTGGAGATATGGGCCTGCAGTGGAGATATGGGCCTGGAGTGGA-GAGAGGAACCTGGAGAAGAGATAGGAACCTGGATGGGAGGTAGGAGCCTAGGGTGGAGATATGGGACTGGAGTGGAGATATGGGACTGGAGTAGAGATATGGGCCTGGAGTGGAGTTATGGGCCTGGAGTGAAGTTATGGGCCTGGAGGTGGAGATATGGG----CCTGGAGTGGAGATAT----GGGCCTGGAGGTGCAGATATGGACCTGGAGTGGAGATATGGCCCTGGAGTGGAGATGTGGGTCTggagtggagatatgggcctggaggtggagataaggg--cctggagtggagatatgggcctggagtggagatatgagcctggagatggagatatgggcctggagtggagatatgggcctggaggtggagatatgggcctggagtggagatatggg--cctggagtggagatatgggcgtggggtggagatatggg---CCTTGAGTGGAGATATGGGA---CTGAAGTGGAGATATgggtgtggggtggagatatggga--ctggagtgcagatatgggcatggggtggagatatgggactggagtggagatatgggcgtggggtggagatatgggactggagtggagatatgggcgtggggtggagatatggg--cctggagtggagatatgggactggagtggagatatgggcgtggggtggagATATGTG--CCTGGAGTGGAGATATGGACGTGGGGTGGAGATATGGG--CCTGGAATGGA-GATATGGGCCTGGAGT s mm3.chr3 30094550 785 - 160674399 TGAAGATGGGGGTACCTGGAGGAGATGGGTGGACCTGAAG--GAGATGGGGGACCTGGA---GGAGATGGAGGACCTGGAG----GAGATGGG----------------GGATCTGGAGGAGATGGGGGAAACTTGGAGGAGATGTGGGGACCTGGAGGAGATGAGGGGACCTGGAG---------------GAAATGGGGA----GACCTGGAGGAGATGAGGGGACCTGGAGGAGATGAGGGGACCTGGAGGAAATGGGGGAACCTGGAG-----GATATGGGGGGACTTGGAG----GATATGAGGGGACCTAGAGGAGATGGTGGGGACCTGGAGGAGATGAGGGGACCTGGAGGAAATGGGGGGACCTGGAGGAAATGGGGGGACCTGGA---GGAGATGGGGGGACCTGGAG----GAAATGGG----------------GGACCTAGAGGAGATGGTGGGGACCTGGAGGAGATGAGGGGACCTGGAGGAAATGGGGGGGACCTGGA--GGAGATGGGGGAACCTGGA--GGAGATGGGGGGACCTGGAGGAGATGGGGGAAACCTGGA--GGAGATGGGGGAAACCTGGA--GGAAATGTGGGGACCTGGAGGAAATGAGGGGACCTGGAGG--AGATGTGGGGACCTGgaagagatgagggaacctggaggagatgaggggacctggaggaaatggggagacctggaggagatgagaggacctggaggagatggggggacctggaggagatggggggacctgga--ggagatgagaggacctggaggagatggggggacctgga--ggagatggggggatctggaggagatggggggacctggaggagatgagaggggCTTGCAGT a score=11909.000000 s hg15.chr19_random 241810 83 + 301858 GGAGATATGGGCGTGGGGTGGAGATATGGGACTGGAGTGGAGATATGGGCCTGTTGTGGAGATATGGGCTTGGAGTGGAGATA s mm3.chr19 7824440 83 - 61093376 GGAGACACAAGGATGTGATGGAGACACAAGGATGTGATGGAGACACAGGGATGTGATGGAGACACAGGGACGTGATGGAGACA s rn2.chr1 10387164 83 - 276301343 GGACACACAGGGATGTGGTGGAGACACAGGGATGTGGTGGAGACACAGGGTTGTGATGAACACAGAGGGATGTGGTGGAGACA a score=11143.000000 s hg15.chr19_random 241918 126 + 301858 TGGAGGTGGAGA--TCTGGGCCCGGGGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGGGAGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGACTGGAGTTATGGACCTAGGGTGGAGA s mm3.chr19 7824375 127 - 61093376 TGT-GATGGAGACACACAAGGATGTGATGGAGACACAAGGATGTGATGGAGACACAAGGATGTGATGGAGACACAAGGATGTGATGGAGACACAAGGATGTGATGGAGACACAGGGATGTGATGGAGA s rn2.chr1 10387105 121 - 276301343 TGT-GATGGA----CACAGGGATGTGATGGATACACAGGGGTGTGATGGA--CACAGGGGTGTGATGGACACACAGGGATGTGGTGGAGACACAGGGATGTGGTGGAGACACAGGGTTGTGATGAACA a score=2117.000000 s hg15.chr19_random 242044 31 + 301858 TCTGAGCCTGGATTGGAGATG-TGGGCCCAGA s mm3.chr4 39564134 31 + 152921959 CATGGACCAAGAGAAGAGCCA-TGGACCAAGA s rn2.chr5 63067784 32 + 191625135 caaagaccaagagaagagccaatggaacaaaa a score=1600.000000 s hg15.chr19_random 242075 69 + 301858 TTGGCTATATGGGCCTAGGGTGGGAATATCAGCCTGGAGTGGAGATATGTGCCTGGAGTGGAGATATGG s mm3.chr9 36627938 67 - 124467299 GGGGATATGTGGG--TATGTTGGGGATATGGGGGTGTGTTGGGGATATGGGAGTATGTTGGGGATATAG a score=2218.000000 s hg15.chr19_random 242144 33 + 301858 GCTTGGGGT-AGGGATATGGGAA-TGGAGGCTGGG s mm3.chr9 36628005 32 - 124467299 GGGTGTGCTGAGGGGTATGGAGG-TG--TGCTGGG s rn2.chr8 37657333 33 - 127756414 GGGTCTGTTGGGGGATGTGGGGAATG--TGCTGGG a score=363.000000 s hg15.chr19_random 242177 11 + 301858 TCTCTGCACAG s mm3.chr2 3379333 11 + 181423755 TGTATGCATGG a score=6538.000000 s hg15.chr19_random 243028 65 + 301858 GGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGCGGCGCC s mm3.chr7 131051140 62 - 134401573 GGAGAGA---TACCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087882 59 - 276301343 GGAGAGA---TGTTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=66854.000000 s hg15.chr19_random 243093 945 + 301858 TCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTTTCTACCTGGCCCAGCCTTGTGGTGCCTCCAGAAC---ATGTGACTCTTCGGTGTCACTCTAATCTTGGGTTTAACAACTTCAGTCTGTACAAGGATGATGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAAAAGCCTTTTCATGGGCCCTGTGACCCCGTCACACACAGGGACCTATAGATGCCGGGGTTCACACACACACTCCCCCAGTGGGGGGTCGGCACCCAGCAACCCCCTGGTGATCGTGGTCACAGGTCAGAGGGCTCCTGTCTGGGAT-TCTCCTTGTCCCACCTCCT----GAATCCCAGAG-CTTCTGGTAGGCATGTCCTTGAGGGTCCCTTCACGCAGGCCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattctaatccctggagtctgtgactatttatgtt----ataggggaagggactgaaggg----gaagatggagctc-----------aggttgttgatgagttgaccttgagatggggagaaggcctggactgtccccctgggctcagtgtaatgacaagtgtccaca----ggaaaggaggaggaagaggggagtggggattagagcagcgt---aatgggagtctcca---tcagctttgaaggtggaggaagg---ccaggagcc-atgaatgcaggtggcctatagaggctgga----aaagtcaaggaactgattctcctgagtctccagagggaacgaaaccctacaggtgcctt------------gattttagcccaggaaaaacagggcccaacttctg-cctccagaaatggaaggggtcagtgtgctctctcctgctgccatgctgctgata--attttctacagcagcaacaggaaaccaacacCGGAACCCAGCTCGAGGAAAAGTTAA s mm3.chrX 31742777 923 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGATGC------TTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGA--GTCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGA---GCTTTAGTCAGTTTCATCAT---------------------TATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT-GTAATACCCATGTATATGTACTTTCTTTTATGAAAGGATT-------CTTGAGTTGAAAATAACTCAAGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAAAAAATTGACATCAGGGTGAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG-GCAGAGACACTCTATTCTTAACACTGGCAGTGATaaaaagactccaagtgccaaggaacgaatgaggcctctagaagatgaaaggcaaagataatgaaaaatttctagtga--tttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggcat----------gcttcaaaatttggatctccagaa----------tgcttttgctccatttaagaacagtatttgtgattattttttctgca--agtgattggaaattaataGAAGGATCTGTATCAATGGGCATCTTA s rn2.chr1 215634466 918 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGATGC------TTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGA--GTCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATA---GTTTTAGTCAGTTTTGTCAT---------------------TATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT-GTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATT-------CCTGAGTTTAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattatagggagacactctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagatgaaaggcaaaaagaataaataatttctagtga--tttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggctt----------gtttcagaattctgatctccagaa----------cacttatactctttttaagaactatatttgtgata--tttttctgca--agtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTA a score=501.000000 s hg15.chr19_random 244207 14 + 301858 TTAATTAATTAAAG s mm3.chr7 131052347 13 - 134401573 ATACCTGACT-CAA s rn2.chr1 214089100 13 - 276301343 ATACCTAACT-CAA a score=9339.000000 s hg15.chr19_random 244221 377 + 301858 AAACCAAACAAGGAGAAGGTTGGCTACACCAAGATCAGCAAGTGAGGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGCGGTTGATACTCCTCCAACCAGCACCAGGAGCCAGGCTATGGAAGCTGGCACAGGCATG-GCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATTCGACCAAAAGAGATTGAACCAGGCTGCTAA-----GAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACATATACAGCAGGAAAGACAT-----------TAGTTCAAAATAGATACAACAGCCGAAGAGATGAGGCTGAGC s mm3.chrX 118321365 322 + 149996094 AAACCTAGAGAAGAGA----TGTCCA----GAAAGCAGTAGGCCA-GAATGATGAC----TCACCAAAGT---------TTTGGAGAGGACAATGCTCAT-GAACAAGAATGACAAGT-----------GCTTGATATAAATTTGTATAATAGCGATTATCAG-------------AAGACTTTCT-----CTGTTAACCACACTCACTACTAAATACCTTATTTTTCCAAGCATTACAGTT-GATCAAAAG---TAGCACAAAGTGACTCATAAAAGAGCCTGG-TATTAAGCTTGTCATGTTTCCTGCTCTCCCCAAACCTGGAAAGGGGCAATGGGATCTATGTTAGAATGTTTCAGA--AGCCACATTCTCACAAGT------------- s rn2.chr1 215635384 300 - 276301343 AAAACTGGAGA---------TGTCTG----GAAAGCAATAGG------------------TCACCAAAGT---------TTTGGAGGGGGCAATGCTCAT-GAATATGAATCAGGAAC-----------ACCTTACATAAATTTGTATAATAGAGATAACCAG-------------AAGAGTTTGG-----CTGTTAATGACCCTCATGAC-AAATCCCTTATTATTCCAAGGAATATACTT-GTTCAAAAG---TGGCACAAAGCAACTCA------AAGCTGG-TATGAAGCTTGTCATGTTTCCTGCTCTCCCCAAACTTGGAAAGGGACAATAAGATCTATGGTAGAATGGTTCGGA--TGACACAGTATCACAAGA----------AAT a score=16579.000000 s hg15.chr19_random 244598 2450 + 301858 CCAGCGGCAAGGGAATCAGAGGTTACTAGAGACAGAGGGACAGAGAAGAGGGAGGGAGACAGATGGAAGGACCTGCACCAGGAGTT---ATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACAGACACCAGGGAGGGGAAGCCTCACTCAATCCAGGTGCCATGGATGGGATGATAAAGAGAGACACCTTCTAAATTCACAAACTCTCT-TCCTAGGATTCCGCAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAGCACTTCCTTCTG----CACAGAGAGGGGACGTTTAACCACACTTTGCGCCTCATTGGAGAGCACATT------GATGGG--GTCTCCAAGGGCAACTTCTCCATCGGTCGCATGACACAAGACCTGGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATCAGTTGTCAGCGCCCAGTGACCCTCTGGACATCGTGATCACAGGTGAGAGTGTCCAGACATTCTTCTCATTGTCATTGGGATGCAGAGTGAAT-------GATCCA-GGACTTGGAGGCCCAGGTGGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGG-AGACACAAGTACAGACCAGGTGTCATA------ACAGAGGACACACACAGGGGCCTTTCCGAGAGTTAGAAAAGACAGAAGGAGTTAAAGGAGACAGACAGACAGACATGTCCCAGA--GAGAGGTGTCCCTCCATGCTGACTTTGCTCAGAGACCTGGCACATGTTAGAAGTTTCATTTCTG-----TTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACAC-CCATATTTCTGACCTGAGTT--------GGGCCCTATGGCCTC---------AGGCCTT--------CTGGCACCTACAGATGCCATGTTTATTCTGACACCTCTGCCTTCCAGGTAATGGAG--AGTAATCGTCCCAGGATATCATGGCCC------------CAGAACACCAACCCCTGTATGCTGTGTGAACTTGTAGTCTCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAAAGGATCACTGAGAGGCACAGAGAAAAATCAGGAACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGGAGTGGTGAGAATGATG----------------GAAGGGAGCAGAGAAAAGCACTAAAATTAGAGTCATGAGGGAGAGGCACAAGGACATAGAAAGATGAAGATGTG-GGGATGAATTGCAGAGATTCCAAAGAGAACTAGAGAGACCGAGAGGCAGAGCAagacagatgatagatggatagatatagatagatgataaataggtagatgatagataataggttatagatacatagatGATGATTGATTGATTCATTAATAGATGAGACATAGAGATGATGatgatgaagacagatagataatacatagagatagagaggcagacatagagaaatcatagagagagagagatgatacacagatatagataatagatgat-------tgatggatagatagaaaatt----gatagataaatagatgatatatagatatagatgacaggtagagaatttgtagataggcacggaatagataaatagatagatcgatagataatagatagaaatatgcagaaagttatgaacaggacacaaagtgagaaactcagaattaaaaaaagtaacatcaagtgaaccaatccaaggagagtcagagagaataaaacaatccaaaaagagaaaacaTATCTAGAGGTGGGGAAGTGAGGTCAGAGACCTagagagacagagaaggtgg---aaggaggaaatagacgtgaagagagatggggtggagggtgagagagagag-agagagagCATTAGGTCACAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGAAGGGAGCTGTGACAAGGAAGATCCTCCCTGAGGAAAATGCC--TCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCTGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTA---TGACATGTACCATCTATCCAGGGAAGGGGAGGCCCATGAACGTAGGCTCCCTGCAGGGCCCAAGGTCAACAGAACATTCCAGGCCGACTTTCCTCTGGACCCTGCCACCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCATACGAGTGGTCAAAGTCAAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAGCCCATGGCTGTCCCATGTCCTATG---------ATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGAGGATGGAGAGAAG----CATGGACAGATGCAGAGAGAA s mm3.chrX 118282267 2236 + 149996094 CCAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATAAGTGGGGAAT--GAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAATAGG-------CTAAGGGTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATAGAGGACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGGGAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAA-ATACAGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTA--GAGAAAGGTAGCCATCTTGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTG---GAGACATAAAGAGTAGAGATAAAGAGAAAGGGGTGAGTCAG-CAAACTTGACATAAATCAAAGAATGTGAAATCATTCTACTAATATTCGGGGGTTAGG-ACAGTTCAAA-------TTTTTGGGGACTTCTACTTCTGCAAGACATTTCT------GAGAAGAGATAGATATACTGTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTG------------------CCGACGGTTAAAATCCA--------------TGAAAAAATTATTCAAACACACTATGAT------GGCAAAGTAAAAAGAAAAAAAGAAAAAACCCACAGAGTCTTCCAGTA---------------------------ATAACCAGAAA-ATAATAAAGCAGAAAAATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGA-----TAGATTCAGAG-----ATGGAAAGGGCTGAGAAAATTATAATATGGC-ATGTGTGGGATGAA-----AAAACTACAAAAAG---TGAGAAAGCTGAGTGGAAGAACT---CAAAGTGGAGATGAAGAAATAATGATAGATGTTAGATA---------------------TTTCAAAACAGAGCTGGGGA-------ATCCAGTGCTAGA----ACACAG------------TGGAGA-----agttcataca------------------ctaagaggaacaagggagaga---agatcat-catggctcttgttcaaggttagcacgcCCCTCCCACATTCATAGAATATTCTGTGGTCTAAAAAGAGA-GATTAATAAATA-----GACATGTAAAAAA------GATAAG-ACGTAACAGTAAATTAAATGAAT----------------------TTCAAAAAACAAGTAGTGGAGTAAAATGTTAGAAT----------AAAAAAGTGATGTAAGG----------------------GACACAGTATGATAACTTATAAGGACA---------------TGGTACAGAGAGA----------AGAGAGAGATAGAGGATGGGTAAATGAAGAAAGAAATGGGAAGATA-------TAGATGACAAAAATGTAAGCAGAGAGAGTGATAGT----------GAGGAGTGAATG---AGCACGGGTAA--GGAACT---------AGCCTTCTATCT-----AAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCT---GCTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGT-ACTGTTCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAAAGTATAGTAGAGAGCTACAGGGAAGA a score=2542.000000 s hg15.chr19_random 253237 25 + 301858 TGACATAAGAGAATTCTACTTCGCT s mm3.chr10 51432994 25 + 130738012 TGATATAAGAGAAGCCTTTTACTCT s rn2.chr1 215563926 25 - 276301343 TGAAGTAAGACAAGCCACTGGCTCT a score=888.000000 s hg15.chr19_random 253262 11 + 301858 TTTTTTATCTT s mm3.chr10 51433019 11 + 130738012 TTTTTTACCTT a score=30500.000000 s hg15.chr19_random 254275 357 + 301858 taggtcTCCCACCATTTGGGTGCTT--GTCCTAAAGAGACGTTGTATGTGGTTACCTGTCAATCAAGAAATGCGAGACAAT-TCATAAAGAGGAACTGCTATGATTAGCTTCTT-ATTGGTGTCTCCTCTTCTTCCAGGTAACCCCAGACACCTACACGTTCTGATTGGGACCTCAGTGGTCAAACTCCCTT---------------------TCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAA-----------GCAGGATGGTAGCACGCGGGTGTGTGTTCCTCACAGGCAGGATGGTCCCTGGCCCAAGGCAGGAGCCACA s mm3.chrX 31750930 345 - 149996094 TATGTCCTCCATCAT----GTCCTTTTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAA--------CAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653481 377 - 276301343 taggttctccATCAA----GTCCATT-ATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAA--------CAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=84725.000000 s hg15.chr19_random 254632 1023 + 301858 GAGGCAGGACTTTCTAGAGAGAGCACCAGATTCCCTTCCCCTGCCTTCAGCTCACAGACCATTGCCT-GATTCTGAA--------CTGTACCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCAT-----------------------------------------------------------------------------GACAGGCAGAAAGTGGGAGATAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGA--------GCTCAGAGAGATAGA----ATG---------------------------------------------TCTGAG----------------------TCTGCTGT-TGGCAACTGAGGGACCTCAGGCACCTATGGCCT---CCCCCTGTTTGTTGGTAT-CTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCT-GTT-TTGTTGACTTCCATCTTCTACAGATGCATCTGTAA---TGGACCAAGGGCCTGCGGGGAACAGA-ACAGTGAACAGGGAGGTAGGTGCTCCTCGGC---CCAGCCTCGTGGCTAGTCT--TATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGATTCTGATGAACAGGACCATCAGGAGGTGTCATACGCATAATTGGATCACTGTGTTTTCACACAGAGAAAAATCACTCCCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCATGTACATAGAACTTCC-AAATGCTGAGTCCAGATCCAAAGCTGTCTTCTGTCCACGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGG--ATCGCTCTTCCtcaaaccacgaatctgaacatgcctctctcttgcttacaaatgtctaaggtccccactgcctgctggagagaaaacacactcctttgcttagcccacaattctccatttcacttgacccctgcccacctctccaacctaactggct-tacttcctag-tctacttgaggctgcaatcacactgaggaactcacaattccaaacatacaagaggctccctct s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGG-AAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGT-GGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGG----------AGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTC-TGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcag-gaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga---gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatg----------agccatggattttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTC-TACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=7045.000000 s hg15.chr19_random 257854 35 + 301858 GAGGAAGGGAGTGTGGGGTTGGAGATCTGGGCCCA s mm3.chrX 113950417 35 - 149996094 GGGAAGGGGAGTGAGGGCTTGGAAATCAGGACCCA s rn2.chrX 12812125 35 - 133900917 GGGAAAGGGAGTAAGGGGTTGGAAATCAGGACCCG a score=3421.000000 s hg15.chr19_random 258076 21 + 301858 AGGAACCTGGAGGGGAGATAG s mm3.chr4 39563774 21 + 152921959 AAGGACCAAGAGAGGAGCCAA s rn2.chr5 63063725 21 + 191625135 gagaaccaggagaggagctaa a score=7741.000000 s hg15.chr19_random 258097 328 + 301858 GAACCTGGAGGGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTGGAGTGGAGTCATGGGCCTGGAGGTGGAGTTACGGGCCTGCAGTAGAGATATGGGCCTGAAGTGGAGACATGGGCCTGGAGTGGAGATATGGGCCAGGAGTGGAGATATGGGCCTAGAGGTCGATATC-TGGGCCTGGAGTGGAGATATGGGCCAGGAGTGGAGATATGGGCCTAGAG----GTCGATATCTGGGCCTGGAGAGGAGATATGTGCCTAGGATGGAGATACGGGCCTGGGTGTGGAGATATGGGACTGGAGAGGATATATGGGCCTGGAGTGGAGATAT s mm3.chr4 39563795 323 + 152921959 GGACCAAGAGAGGAATCATGGACCAAGAGA-GGAGCCAAGAACCAAGAGAAGAGCCAAGGACCAAAAGA-GGAGCCAAGGACCAAGAGAGGAATCATGGACCAAGAGAGGAATCATGGACCAAGAGAGGAATCATGGACCAAGAGAGGAATCATGGACCAAGAGA--GGAATCATGGACCAAGAGAGGAATCATGGACCAAGAGAGGAATCATGGACCAAGAGAGGAGCCAA-----GAACCAAGAGAAGAGCCAAGGACCAAAAGAGGAGCCAAGGACCAAGA-GAGGAATCATGGACCAAGAGAGGAATCATGGACCAAGAGAGGAATCAT a score=5217.000000 s hg15.chr19_random 258425 47 + 301858 GGGACTGGAGAGGAGATATGGACCTGGAGTGGAGATA-AGGGCCTGGA s mm3.chr4 39564118 47 + 152921959 GGACCAAGAGAGGAGCCATGGACCAAGAGAAGAGCCA-TGGACCAAGA s rn2.chr5 63067768 48 + 191625135 GAACCAagaaaggagtcaaagaccaagagaagagccaatggaacaaaa a score=6703.000000 s hg15.chr19_random 259481 66 + 301858 CGAGGAGAATCTTCAGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGCGGTGCC s mm3.chr7 131051137 65 - 134401573 CAAGGAGAGATACC-GAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087879 62 - 276301343 CAAGGAGAGATGTT-GAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=70799.000000 s hg15.chr19_random 259547 944 + 301858 TCCTTCTCCCCACGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCAAGCCCTGTGGTGCCTCCAGGAT---ATGTGATTCTTCAGTGTCATTCTTATCTTGGGTTTAACAACTTCAGTCTGTAAAAGGAAGATGGGGTGCCTGTCCCTGAGCTCTACAACATAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCAGCACACGCAGGGACCTATACATGTCGGGGTTCACAACCACACTACCCCAGTGGGTGGTCGGCACCCAGCAACCCCCTGGAGATCACGGTCACAGGTCAGAGGGCTCCTGTCTGGGAT-TCTCCTTGTCCCACCTCCT----GAATCCCAGAG-CTCCTGGTGGGCGTGTCCTTGCGGGTCCCATCATGCAAGTCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattctaatccctggagtctgtgactatttatgatataggggaagggactgaagga-------------gaagatggagctc-----------aggttgttgatgagttgaccttgagatggggagacaacctggactgtcctgatgggctcagtgtagtcacaggggtccaca----ggaaaggaggaggaagaggggagtggggattacagcagcat---aatgggagtctcca---tcagctttgaaggtg---gaggaagtccaggagcc-atgaatgcaggtggcctatagaggctgga----aaagtcaaggaactgattctcctgagtctccagagggaacgaagccctgcaggtacctt------------gattt-tacccacgacaaacagggtccgatttctgtctccagaattggaaggggttagtgtgctctctcctgctgccatgcttctgata--attttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAA-GGACAAGTTAA s mm3.chrX 31742777 924 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGA--GTCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGA---GCTTTAGTCAGTTTCATCAT---------------------TATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT-GTAATACCCATGTATATGTACTTTCTTTTATGAAAGG---------ATTCTTGAGTT---GAAAATAACTCAAGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAAAAAATTGACATCAGGGTGAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG-GCAGAGACACTCTATTCTTAACACTGGCAGTGATaaaaagactccaagtgccaaggaacgaatgaggcctctagaagatgaaaggcaaagataatgaaaaatttctagtga--tttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggcatgcttcaaa---------atttggatctccagaat--------gct--tttgctccatttaagaacagtatttgtgattattttttctgca--agtgattggaaattaataGAAGGATCTGTATCAATGGGCATCTTAA s rn2.chr1 215634466 919 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGA--GTCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATA---GTTTTAGTCAGTTTTGTCAT---------------------TATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT-GTAGTACCCATGGACATGCACTTTCTTGTACTTAAGG---------ATTCCTGAGTT---TAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattatagggagacactctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagatgaaaggcaaaaagaataaataatttctagtga--tttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggcttgtttcaga---------attctgatctccagaac--------act--tatactctttttaagaactatatttgtgata--tttttctgca--agtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAA a score=8282.000000 s hg15.chr19_random 260660 395 + 301858 TTAATTAATTAATTAAAGAAACCAAACAAGGAGAAGGTTGGCTACACTGAGATCAGCAAGGCTCGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGCGGTTGATACTCCTCCAACCAGCACCAGGAGCCAGGCTATGGAAGCTGGCACTGGCATGGCAAGAGTGTCTCCCAGTCCCTACCAGGAACAGGGTGTGTGGCCACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATTCGTCCAAAAGAGATTGAACCAGGCTGCTAA-----GAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACACAGACAGCAGGAAAGACAT-----------TAGTTCGAAATAGATACAACAGCCCAAGAGATGAGGCTGAGC s mm3.chrX 118321369 318 + 149996094 ---------------------------CTAGAGAAG---AGATGTCCAGAAAGCAGTAGG-CCAGAATGATGAC----TCACCAAAGT---------TTTGGAGAGGACAATGCTCAT-GAACAAGAATGACAAGT-----------------GCTTGATAT---AAATTTGTATAATAGCGATTATCAGA---AGACTTTCT-----CTGTTAACCACACTCACTACTAAATACCTTATTTTTCCAAGCATTACAGTT-GATCAAAAG---TAGCACAAAGTGACTCATAAAAGAGCCTGG-TATTAAGCTTGTCATGTTTCCTGCTCTCCCCAAACCTGGAAAGGGGCAATGGGATCTATGTTAGAATGTTTCAGA--AGCCACATTCTCACAAGT------------- s rn2.chr1 215635388 296 - 276301343 ---------------------------CTGGAGA--------TGTCTGGAAAGCAATAGG------------------TCACCAAAGT---------TTTGGAGGGGGCAATGCTCAT-GAATATGAATCAGGAAC-----------------ACCTTACAT---AAATTTGTATAATAGAGATAACCAGA---AGAGTTTGG-----CTGTTAATGACCCTCATGAC-AAATCCCTTATTATTCCAAGGAATATACTT-GTTCAAAAG---TGGCACAAAGCAACTCA------AAGCTGG-TATGAAGCTTGTCATGTTTCCTGCTCTCCCCAAACTTGGAAAGGGACAATAAGATCTATGGTAGAATGGTTCGGA--TGACACAGTATCACAAGA----------AAT a score=17688.000000 s hg15.chr19_random 261055 2448 + 301858 CCAGCGGCAAGGGAATCAGAGGCTACTAGAGACAGAGGGACAGAGAAGAGTGAG-GGAGACAGATGGAAGGACCTGCACCAGGAGTT---ATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGATAAGACACCAGGAAGGGGAAGCCTGACTCAATCCAGGTGCCATGGATGGGATGATAAAGAGAGACACCTTCTAAACTCACAACCTCTCT-TCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCGCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAACACTTCCTTCTG------CACAGAGAGGGGATGTTTAACGACACTTTGCGCCTCATTGGAGAACACCAT-------GATGGG--GTCTCCAAGGCCAACTTCTCCATCAGTCGCATGAAGCAAGACCTGGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTGATCATAGGTGAGAGTGTCCAGACTTTCTTCTCATTGTCATTGGGATGCAGAGTGAAT-------GATCCA-GGACTTGGAGGCCCAGGTGGCTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTGCCAACAGAGACAGAGAAACAGG-AGACACAAGTAGAGACCA--GGTGTCATAACAGAGAACAGACACAGGGGCCATACCGGGAGTTTGAAAAG-ACAGAAAGAGTTAAAGGAAACACACAGACAGACATGTCCCAGA--GAGAGGTGTCCCTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTG-----TTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACAC-CCATATTTCTGACCTGAGTT--------GGGCCCTGTGGCCTC---------AGGCCTTG--------TGGCACCTACAGATGCCATGTTTATTCTGACACCTCTGCCTTCCATGTAATGGAG--AGTAATCGTCCCAGGATATCATGGCCC------------CACAACACCAACCCCTGTATGCTGTGTGAACTTGTAGTCTCCAGACTGGATTCTGAGGCTCATATTCCAAATAAGCCCACTTATGAGAGGATCAGTGAGAGGCACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGAA-AAGAGGGCAGAGAAGTGAGAATG-------------------ATGGAAGGGAGCAGAGAAAAGCACTAAAATTAGACTCCTGAGGGAGAGGCACAAGGACATTGAAAGATGGAGATGTG-GGGATGAATTGCAGAGATTCCAAAGAGAACTAGAGAGACCGAGAGGCAGAGCAagacagatgatagatggatagatatagatagatgataaataggtagatgatagataataggttatagatacatagatGATGATTGATTGATTCATTAATAGATGAGACATAGAGATGATGATGATGAAGACAGATAGATAGATAATACATAGAGATACAGAGGCAGACATAGAGAA-ATCATAGagagagagagatgatacatagatatagataatagatgattgatggatagatagacaatt----gatggataaatagatgatatatagatatagatgacaggtagagaatttgtagataggcaccgaatagataaatagatagat--cgatagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTCAGAATTAAAAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGAGAAAACATATCTAGAGG-TGGGGAAGTGAGGTCAGAGACCTAAAGAGACAGAGAAGGTGGAAGGAGGAAATAGACATGAAGAGCGATGGGGTagagggtgagagagagagagagagagCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGAAGGGAGCTGTGACAAGGAAGATCCTCCCTGAGGAAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCTGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTA---TGACATGTACCATCTATCCAGGGAAGGGGAGGCCCATGAACGTAGGCTCCCTGCAGGGACCAAGGT-CAACGGAACATTCCAGGCCAACTTTCCTCTGGGCCCTGCCACCCATGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCATACGAGTGGTCAAAGTCAAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAGCCCATGGCTGTCCCATGTCCTATG---------ATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGATGATGGAGAGAAG----CATGGACAGATGCAGAGAGAA s mm3.chrX 118282267 2236 + 149996094 CCAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATA---AGTGGGGAATGAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAATAG-GCTAAG-------GGTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATA---GAGGACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGGGAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAAATAC-AGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTA--GAGAAAGGTAGCCATCTTGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTGGAGACATAAAGAGTAGAGATAAAGAGAAAGGGGTGAGTCAG-CAAACTTGACATAAATCAAAGAATGTGAAATCATTCTACTAATATTCGGGGGTTAGG-ACAGTTCAAA-------TTTTTGGGGACTTCTACTTCTGCAAGACATTTCT------GAGAAGAGATAGATATACTGTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTG------------------CCGACGGTTAAAATCCA--------------TGAAAAAATTATTCAAACACACTATGAT------GGCAAAGTAAAAAGAAAAAAAGAAAAAACCCACAGAGT-------------------------CTTCCAGTAATAACCAGAAAATAATAAAGCAGAAAAATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGA-----TAGATTCAGA-----GATGGAAAGGGCTGAGAAAATTATAATATGGC-ATGTGTGGGATGAA-----AAAACTACAAAAAG---TGAGAAAGCTGAGTGGAAGAACT---CAAAGTGGAGATGAAGAAATAATGATAGATGTTAGATA---------------------TTTCAAAACAGAGCTGGGGA-------ATCCAGTGCTAGA----ACACAGTGGAGAagttcat-------------------acactaagaggaacaaggg-------agagaagatcatc-----------atggctcttgttcaaggttagcacgcCCCTCCCACATTCATAGAATATTCTGTGGTCTAAAAAGAGA-GATTAATAAATA-----GACATGTAAAAAA------GATAAG-ACGTAACAGTAAATTAAATGAATTTCAAAAAACAAGTAGTGGA-----GTAAAATGTTAGAATAAAAAAGTGATGTAAGGGACACAGTATGATAACTTATAAGGACATGGTA-----------------CAGAGAGAA--------------GAGAGAGA-------TAGAGGATGGGTAAATGAAG----------AAAGAAATGG------------GAAGATATAGATGACAAAAATGTAAGCAGAGAGAGTGATAGTGAG------------------------------GAGTGAATG---AGCACGGGTAA--GGAACT------------AGCCTTCTATCTAAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCT---GCTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTG-AGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGT-ACTGTTCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAAAGTATAGTAGAGAGCTACAGGGAAGA a score=29959.000000 s hg15.chr19_random 270758 334 + 301858 TTGTCCTAAAGAGACGTTGTATGTGGTTACCTGCCAATCAAGAAATGCGAGACAAT-TCATAAAGAGGAACTGCTATGATTAGCTTCTT-ATTGGTGTCTCCTCTTCTTCCAGGTAACCCCAGACACCTACATGTTCTGATTGGGACCTCAGTGGTCAAAATCCCTT---------------------TCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCGACAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAA-----------GCAGGATGGGAGCACGCGGATGTGTGTTCCTCACCAGCAGGATGGTCCCTGGCCCAAGACAGGAGCCACA s mm3.chrX 31750951 324 - 149996094 TTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAA--------CAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653502 356 - 276301343 -TATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAA--------CAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=85097.000000 s hg15.chr19_random 271092 1023 + 301858 GAGGCAGGACTTTCTAGAGAGAGCACCAGATTCCCTTCCCCTGCCTTCAGCTCACAGACCATTGCCT-GATTCTGAA--------CTGTATCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCAT-----------------------------------------------------------------------------GACAGGCAGAAAGTGGGAGATAGAATCAATGGGATGGGACCTCAGAGCTATTCATGGGATGGGTCCTTGAACT------------CAGAGAGATAGAATG---------------------------------------------TCTGAG----------------------TCTGCTGT-TGGCAACTGAGGGACCTCAGGCACCTATGGCCT---CCCCCTGTTTGTTGGTAT-CTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCT--CTTTTGTTGACTTCCGTCTTCTACAGATGCTGCTGTAA---TGGACCAAGAGCCTGCAGGGAACAGA-ACAGTGAACAGCGAGGTAGGTGCTCCTCGGC---CCAGCCTCGTGGCTAGTCT--TATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGATTCTGATGAACAAGACCATCAGGAGGTGTCATACGCATAATTGGATCACTGTGTTTTCACACAGAGAAAAATCACTCGCCCTTCTGAGAGGCCCAAGACACCCCCAACAGATACCAGCATGTACATAGAACTTCC-AAATGCTGAGCCCAGATCCAAAGTTGTCTTCTGTCCACGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGG--CATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCACTTGACCCCTGCCCACCTCTCCAACCTAACTAGCT-TACTTCCTAG-TCTACCTGAGGCTGCAATCACACTGAGGAACTCACAATTCCAAACATACAAGAGGCTCCCTCT s mm3.chrX 31751275 1167 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGG-AAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGT-GGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGG----------AGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTC-TGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCT s rn2.chr1 215654218 1165 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcag-gaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga---gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatg----------agccatggattttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTC-TACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCT a score=3372.000000 s hg15.chr19_random 274210 115 + 301858 GAGGGAGGGAGTG---CGGGGATGGAGATCGGGGCCCAGAGTTGGAGATATAGGCCTGGAAGTGGAGTTATGGGCCTAGAGATGGAGTGATGGGCCTAGAAGTGGAGATCTGGGCCTG s mm3.chr5 52257359 118 + 149719773 GAGGGAGGGATGGACCTGCACCTGGAGCAGTGGGCCTGCACCTGGAGCAGTGGGCCTGTACCTAGAGTGATGGGCCTGCACCTGGGGCGATGGGCCTGCACCTGGGGTGATGGGCCTG a score=8173.000000 s hg15.chr19_random 274616 166 + 301858 GAAGGAG------------------------------------------ATATGGGC--------CTGGGTGTGGAGATATGGGACTGGAGAGGTG-----ATATGGGCCTGGAGTGGAGATATGGGCTTAGGGTGGAGATCTGGGCCTGGGGCAGAGATATGGGACTGGATTGGAGATATGGGCCTAGGGTGGAAATATCAGCCTGGAGTGGAG------------------------------------------------ATATGG s mm3.chr15 67573337 166 - 104111694 GAAGCAG------------------------------------------ACAGGTGT--------GCAGATGTGCAGATGTGAGGCAGGTGTGCAG-----ATGTGAGGCAGGTGTGCAGATGTGAAGCAGGTGTGCAGATGTGAGACAGGTGTGCAGATGTCAGGCAGGAGTGGAGATGCCAGGCAGGTGTGCAGCTGCCAGGCAGGTGTGGAG------------------------------------------------GTGTGG s rn2.chr7 69567341 269 + 139049774 GAGGCAGTTGTGGAGATGCAAGGCAGTTGTGCACATGCCAGGCACATATACAGGTGTCATGCCTGGCAGGTGTGCAGGTGCCAGGCATGTGTGCAGGTGTCATGCcaggcatgtgtgcaggtgccaggcaggtgtgcaggtgccaggcaggtgtgcaggtgccaggcaggtgtgcaggtgccaggcatgtgtgcaggtaccaggcaggtgtgcagttactaggcaggtgtcatgccaggcaggtgtacaggtgccaggcaggtgtgtag a score=6561.000000 s hg15.chr19_random 275665 66 + 301858 CGAGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCAGTTCCACATCCTCCTCTCTAAGGCGGCGCC s mm3.chr7 131051137 65 - 134401573 CAAGGAGAG-ATACCGAGCACAACGAGAAGGAGGTGCCGCTGCCTCCTTATGTCTAAGACCAGGCC s rn2.chr1 214087879 62 - 276301343 CAAGGAGAG-ATGTTGAGCACAA---ATAGGAGTTGCTGCTGCCTCCTTATTTCTAAGACCATGCC a score=66614.000000 s hg15.chr19_random 275731 919 + 301858 TCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCCTTGTGGTGCCTCTAGGAC---ATGTCATTCTTCGGTGTCACTCTTATCTTGGGTTTAACAACTTCAGTCTGTACAAGGAAGGTGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCCGCACA-ACAGGGACATACAGATGTCGGGGTTCACACACACACTCCCCCAGTGGGTGGTCAGCACCCAGCAACCCCCTGGTGATCGTGGTCATAGGTCAGAGGGCTCCTGTCTTGGATTCTCCTTGT------CCCACCTCCTGAATCCCAGAG-CTTCTGGTGGGCATGTCCTTGAGGGTCCCATCACGCAGGCCCTGACTGTATTTGTGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattct----------aatccctgg-------------------------agtctgtgactatgtatgtt----ataggggaagggactgaaggggaagatggagctcatg--gggagacag-cctggactgtcccactgggctcagtgtaatcacaagggtgcacat----gaaaggaggaggaagaggggagtggggattaga---gcagtccagtggaagtcttca---ccagctttgaaggtggaggaagg---ccaagagcc-atgaatgcaggtggcctatagaggctggaaaagtcaaggaactg---attctccagagtctccagaggaaacgaagccctgcagatgcctt------------gattttagcccaggaaaaatagggtcc--aatttctgtctccag--tactggaaggtgtcagtgtggtctctcctgcttccatgcttctgataattttgtacagcagcaacaggaaaccaacacTGGAACCCAGGTCAA-GGACAAGTTAA s mm3.chrX 31742777 924 - 149996094 TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGAG---TCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGA---GCTTTAGTCAGTTTCATCA---------------------TTATAGAGGAATGTTCAACAAAGAAAATTGAATATTATGCTGGGCATAAT-GTAATACCCATGTATATGTACTTTCTTTTATGAAAGGATTCTTGAGTTGAAAATAACTCAAGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAA-----AAAATTGACATCAGGGTGAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG-GCAGAGACACTCTATTCTTAACACTGGCAGTGATaaaaagactccaagtgccaaggaacgaatgaggcctctagaagat-gaaaggcaaagataatgaaaaatttctagtgatttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggcat-----------gcttcaaaatttggatctccagaatgct------------tttgctccatttaagaacagtatttgtgattattttttctgcaagtgattggaaattaataGAAGGATCTGTATCAATGGGCATCTTAA s rn2.chr1 215634466 919 - 276301343 TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGAG---TCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATA---GTTTTAGTCAGTTTTGTCA---------------------TTATAGAGAACTATTCAACAA-----------TACTGTACTGGGCACAAT-GTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATTCCTGAGTTTAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAA-----AAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattatagggagacactctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagat-gaaaggcaaaaagaataaataatttctagtgatttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggctt-----------gtttcagaattctgatctccagaacact------------tatactctttttaagaactatatttgtgata--tttttctgcaagtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAA a score=347.000000 s hg15.chr19_random 276650 16 + 301858 GAAACAACCCAAGGAA s mm3.chrX 118321366 11 + 149996094 -----AACCTAGAGAA s rn2.chr1 215635385 10 - 276301343 -----AAACTGGAGA- a score=1609.000000 s hg15.chr19_random 276824 25 + 301858 TAATTAATTAAAGAAACCAAACAAG s mm3.chr7 131052348 23 - 134401573 TACCTGACTCA--AAGTCAAACAGG s rn2.chr1 214089101 22 - 276301343 TACCTAACTCA--AAGACAAGCAG- a score=10533.000000 s hg15.chr19_random 276849 379 + 301858 GAGAAGGTTGGCTACCCTGAGATCAGCAAGGGTGGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTTGATACTCCTCCAACCAGCACCAGGAGCCAGCCTATGGAAGCTGGCACCATGGAGAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTATTCATCAGTTCATACC---TTCTGCCAAGGATTGCAATTCATCCAAAAGAGATTGAACAAGGCTGATAA-----GAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTTCACCCCCACATAAA------CAGCAGGAAAGACGTTAGTGTGAAATAGAT---ACAACACCCCAAGAGATGAGGCTAAGC s mm3.chrX 118321377 310 + 149996094 GAGA--------TGTCCAGAAAGCAGTAGG-CCAGAATGATGAC----TCACCAAAGT---------TTTGGAGAGGACAATGCTCAT-GAACAAGAATGACAAG-TGCTTGATATAAATTTGTATAATAGCGATTAT-CAG-------AAGACTTTCTC------------------------------------TGTTAACCACACTCACTACTAAATACCTTATTTTTCCAAGCATTACAGTTGATCAAAA----GTAGCACAAAGTGACTCATAAAAGAGCCTGG-TATTAAGCTTGTCATGTTTCCTGCTCTCCCCAAACCTGGAAAGGGGCAATGGGATCTATGTTAGAATGTTTCAGAAGCCACATTCTCACAAGT------------- s rn2.chr1 215635395 289 - 276301343 ------------TGTCTGGAAAGCAATAGG------------------TCACCAAAGT---------TTTGGAGGGGGCAATGCTCAT-GAATATGAATCAGGAA-CACCTTACATAAATTTGTATAATAGAGATAAC-CAG-------AAGAGTTTGGC------------------------------------TGTTAATGACCCTCATGAC-AAATCCCTTATTATTCCAAGGAATATACTTGTTCAAAA----GTGGCACAAAGCAACTCA------AAGCTGG-TATGAAGCTTGTCATGTTTCCTGCTCTCCCCAAACTTGGAAAGGGACAATAAGATCTATGGTAGAATGGTTCGGATGACACAGTATCACAAG----------AAAT a score=19096.000000 s hg15.chr19_random 277228 2440 + 301858 CCAGTGGGAAGGGAATCAGAGGCTACTAGAGACAGAGGGACAGAGAAGAGGGAGGGAGACAGATGGAAGGACCTGCACCAGGAGTT---ATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACAGACACCAGCAAGGGGAAGCCTCACTCATTCTAGGTGCCATGGATGGGATGATAAAGAGAGACACCTTCTAAACTCACAACCTCTCT-TCTTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCAGGTTTGAGCACTTCCTTCTG----CACAGAGAGGGGAAGTATAAGGACACTTTGCACCTCATTGGAGAGCACCAT-------GATGGG--GTCTCCAAGGCCAACTTCTCCATCGGTCCCATGATGCAAGACCTTGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTCATCACAGGTGAGAGTGTCCGGAC---ATTCTCATTGTCATTGGGCTGCAGAGTGAAT-------GATCCACGACTTGGAACCCCCAGGTAGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGCTGAGGTTTGTACCAACAGAGACAGAGAAACAGG-AGACACAAGTACAGACCA--GGTGTCATAACGGAGGACAGACACAGGG---------GCCATACAGGGAGTTAGAAAAGACAGAAAGAGTTAAAGGAGACAGACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCACAGACCTGGCACAGGATAGAAGTTTCA--TTTCTG-----TTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACAC-CCATATTTCTGACCTGAGTT--------GGGCCCTGTGGCCTC---------AGGCCTTG--------TGGCACCTACAGGCC--ATGTTTATTCTGACACCTCTGCCTTCCATGTAATGGAG--AGTAACCGTCCCAGGATATCATGGCCC------------CAGAACACCAACCCCTGTATGCTGTGTGAACTTGTGGTCTCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAAAGGATCACTGAGAGGCACAGAGAGAAATCAGGAACACCAAAAAGCAAAGACATAAACACACAGAGAATGGGCCAGAGGAAGGAGATTGAGAGACTCACTGACACATAAAGAGAGAGAAAAGAGGGCAGAGGAGTGGTGAGAATGATG----------------GAAGGGAGCAGAGAAAAGCACTAAAATTAGAGTCCTGAGGGAGAGGCACAAGGACATAGAAAGATGGAGATGTG-GGGATGAACTGCAGAGATTCCAAAGAGAACTAGAGAGACCGAGAGGCAGAGCAagacagatgatagatggatagatatagatagatgataaataggtagatgatagataataggttaaagatacatagatgatgattgattgattcattaatagataatacatagagatgatgatgatgaagacagatagataatacgtacagatagagaggcagacagaaatcatagagagagagatgatacatacataTAAATAACAGATgattgatggatagatagacaactgatagatacatagatgatatatagatatagatgacaggtagagaatttgtagataggcaccgaatagataaatagatagatcgacagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAACGTGAGAAACTTA---GAATTTAAAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAG---AGAATAAAAGAATCCAAAAAGGGAAA----------ACATATCTAGAGGTGGGGAAGCGAGGTCAGAGACCTagagagacagagaaggtgg---aaggaggaaatagacatgaagagagatggggtggagggtgagagagagag-agagagagCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGAAGGGAGCTGTGACAAGGAAGATCCTCCCTGAGGAAAATGCC--TCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTTTGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTA---TGACATGTACCATCTATCCAGGGAGGGGGAGGCCCATGAACGTAGGTTCTCTGCAGGGCCCAAGGTCAACGGAACATTCCAGGCCGACTTTCCTCTGGGCCCTGCCACCCACGGAGGAACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCCTATGAGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAACCCCATATCTGTCTCATGTCCTATG---------ATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGATGATGGAGAGAAG----CATGGACAGATGCAGAGAGAA s mm3.chrX 118282267 2236 + 149996094 CCAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATAAGTGGGGAAT--GAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAATAGG-------CTAAGGGTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATA-GAGGACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGGGAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAAATAC-AGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTA--GAGAAAGGTAGCCATCTTGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTGGAGACATAAAGAGTAGAGATAAAGAGAAAGGGGT----GAGTCAGCAAACTTGACATAAATCAAAGAATG---------TGAAATCATTCTACTAATATTCGGGGGTTAGGACAG----TTCAAATTTTTGGGGACTTCTACTTCTGCAAGACATTTCT------GAGAAGAGATAGATATACTGTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTG------------------CCGACGGTTAAAATCCA--------------TGAAAAAATTATTCAAACACACTATGAT------GGCAAAGTAAAAAGAAAAAAAGAAAAAACCCACAGAGTCTTCCAGTA---------------------------ATAACCAGAAA-ATAATAAAGCAGAAAAATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGA-----TAGATTCAGAG-----ATGGAAAGGGCTGAGAAAATTATAATATGGC-ATGTGTGGGATGAA-----AAAACTACAAAAAG---TGAGAAAGCTGAGTGGAAGAACT---CAAAGTGGAGATGAAGAAATAATGATAGATGTTAGATATTT------------------CAAA---ACAGAGCTGGGGA-------ATCCAGTGCTAGA----ACACAG------------TGGAGA---------agttcatacactaagaggaaca--------------agggagagaagat-----catc---atggctcttg-ttcaaggttag-cacgcCCCTCCCACATTCATAGA----------ATAT-----------------TCTGTGGTC--------------TAAAAAGAGAGAT-------TAATAAATAGACATGTAAAAAAGAT-------AAGACGTAAC---AGTAAATTAAATGAATTTCAAAAAA------CAAGT-----------AGTGGAGTAAAATGTTAGAATAAAAAAGTGATGTAAGGGACACAGTATGATAACTTATAAGGACATGGTACAGAGAGA----------AGAGAGAGATAGAGGATGGGTAAATGAAGAAAGAAATGGGAAGATA-------TAGATGACAAAAATGTAAGCAGAGAGAGTGATAGT----------GAGGAGTGAATG---AGCACGGGTAA--GGAACT---------AGCCTTCTATCT-----AAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCT---GCTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGT-ACTGTTCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAAAGTATAGTAGAGAGCTACAGGGAAGA a score=30469.000000 s hg15.chr19_random 286938 334 + 301858 TTGTCCTAAAGAGACGTTGTATGTGGTTACCTGCCAATCAAGAAATGCGAGACAAT-TCATAAAGAGGAACTGCTATGATTAGCTTCTT-ATTGGTGTCTCCTCTTCTTCCAGGTAACCCCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGTCAAAATCCCTT---------------------TCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAA-----------GCAGGATGGGAGCACTCAGGTGTGTGTTCCTCACCAGCAGGATGGTCCCTGGCCCAAGACAGGAGCCACA s mm3.chrX 31750951 324 - 149996094 TTATTGTAAAGAAATAGTATAT-TAATTATCCATCAATTAATAAATATTATGCAATGTAACAAAATGGGGATAGTCAGATTTACCTCTTAATTGGTTTCACATTTTTCTCCAGATAACTGCAAGAACCTGCGCATTCTAACTGGGCTCTTAATGACCATGGTCCTTG------------------------------TCATCATCATCATCTTTTATTCTTGTTACTTTCCCAAACAGAATAAGTCTCAGAAA--------CAAGCAGGTAGGTGTCATCTATGTAAAATGAT-----AAGTAATGGAGGAATCATGGTGTGTATTTTTCCCTTAAAAAAGGAAATTTGGCACAAGATAAGGAAAACT s rn2.chr1 215653502 356 - 276301343 -TATCCTAAAGaaatattatat-taattatccaaaaattaataaatattatGCAATGTAAGAAAATGGTGATCTTAACATTTACTTCTTAATTGGGTTCACATTTTTCTCCAGATAACCTCAAGAACCTGCACATTCAAATTGGGCTCTTAGTGACCATGGTCCTTGtcatcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatTTATTATTATTACTTTTCCAAAAAGAGTAAGTCTCAGAAA--------CAAGCAGGTGGGTGTCATCTGTGTATTATGATTAAAAAAATAGTGGAGGAATACTGGTGTATA-TTTTCCCTTACACGAGAACA-TTAGTACAAGACAAGGAACATT a score=84523.000000 s hg15.chr19_random 287272 1031 + 301858 GAGGCAGGACTTTCTAGAGAGAGCACCAGATTCCCTTCCCCTGCCTTCAGCTCACAGACCGTTGCCT-GATTCTGAA--------CTGTACCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCAT-----------------------------------------------------------------------------GACAGGCAGAAAGTGGGAGATAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAACT------------CAGAGAGATAGAATG---------------------------------------------TCTGAG----------------------TCTGCTGT-TGGCAACTGAGGGACCTCAGGCACCTATGGCCT---CCCCCTGTTTGTTGGTAT-CTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCT--CTTTTGTTGACTTCCGTCTTCTACAGATGCTGCTGTAA---TGGACCAAGAGCCTGCAGGGAACAGA-ACAGTGAACAGCGAGGTAGGTGCTCCTCGGC---CCAGCCTCGTGGCTAGTCT--TATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGATTCTGATGAACAAGACCATCAGGAGGTGTCATACGCATAATTGGATCACTGTGTTTTCACACAGAGAAAAATCACTCGCCCTTCTGAGAGGCCCAAGACACCCCCAACAGATACCAGCATGTACATAGAACTTCC-AAATGCTGAGCCCAGATCCAAAGTTGTCTTCTGTCCACGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGG--CATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCACTTGACCCCTGCCCACCTCTCCAACCTAACTGGCT-TACTTCCTAG-TCTACCTGAGGCTGCAATCACACTGAGGAACTCACAATTCCAAACATACAAGAGG------CTGCCTCTTAACACAG s mm3.chrX 31751275 1181 - 149996094 AAGACTGAGCTTTCTAGAGAAAGCAACAGAGCTCTTGTACTTTTTTTCAGCTCTCAGAACACAGGCGAAAATCTCAATGTGTCTTCTGCCTCTTTACATCCAAAGCATAGCTTGTTATATAGG-AAAGGTCTtgtgtgtatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGT-GGGTGGGTGGGTGAAATGGGAGGTGGAGGGAGAGAGATAGACTGTGGTAAAGAGAGAATTGTGAGTCTGGATCAAGAGAGGGATGGGGCTCTGAACTGAGAGAG-------------TCTGCTCTGTGGCAGGTGAGG----------AGCTATGGGTTTTACTGCACGT-CTCAAGTACACTGGATTTGATTTGACATTGCTGGACTATTTCACTACTT-GTTATTAATTTCTCCTGTCCCCTAAAAATGCAGCAGCCAGCATGGAACAAGAGTCTGAAGTTAAAAAACACAATAAACAGACAGGTAGGTCATCCTGAGCATGTCATCTTC-TGCCTAGTCTAATCTCCCCTCATACTCTGCAATAATACATGCATACA---TCATTTAACATCTACAGCTTTCTAGGACTTTGAAGGACAAGAAGGACAGGAGGTGACATACACAGAACTTGAGCAGAGAATCTTCAACCAAAACTTGATGCCTCCCATTTCCCGAATTTCT---GAGTTTTCTGCAGATACCATTGTGTACATGGAAATTATGAAATGATAAACTGAGATCAAAGAATGTCTGCACCCACTGAGTTCTCAAAGAAAGATCTAAGGAAGTCTTTTGTGGAAAACAGAGCCTTTTCATCAACAAAGGCTGTTTGATGCAGTGAAATAACAGCTGGAATATGAAGGCAGAAGTCTTTAAATTTGGGGTTATCCTTAATTGTTCTAATACTGTTCTTAATGTAGTTTACTAATACATAAAAA-GACTATGGTCCTCACTGACAGCATTACAGAAATCACATTCTATTTATTAGTCCATGGTTCTCCACGT-ATTCCCTAGTTTCAGACCTCTACAATGTAACCAACTATATTTT-TAGATCGACTTGAAGCTGCATGCTGTTTG----TCTTACAATTCCATACCAAC-AAAGGTTCATTCTGCTTATTAGCATAG s rn2.chr1 215654218 1179 - 276301343 AAGACAGGGCTTTCTAGAGAGAGCAACAGAGATCCTGGACTTTTTCTCAGCTCTTAGaacacagactaaaatctcagtgcatcttccgcaacttcatattcaaagcatgaagtgttatatcag-gaaattcgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagaaagaaagagaggcaaagacagagatagacagagaaagagacagagagacagagagagagagagacacagagacaga---gatgattggatgaaaagggaaatggagggagagaga----atgtagtaaagaaagaattgtgaggatggagcatgtgtaggatggagctctgaacaaagagaggcacatttctgagtctgttttgtggtaggtaatg----------agccatggattttaCCACATGTACCTTAGCACATTAGATTTGAAATGAGAATGCTGGAGTACTTCACTATTTCTTTTTTAATTTCTCCTGTCTCCTAAATATACAGGCAGCATTTTAGAACAAGAGTCTGAAGTTAAAGCA-ACAATAAACAGACAGGTAGGTCTTCCTGAGCATGCTATCTTC-TACCCAGTCTAATATCCCCTCATACTCTGCAATAATATATGCATACAACATCATATGATATTTACCTCTTTCTAGGATCCTGAAAGACAAGAAGAGCATAAGGTGACATACATAGAATTTGAGCAGAGGATCTTCAACAAAAACTTAATGCCTCCTATTTCCCAGAGTCCCAAGGAGTTTTCTATAGATACTGTTGTGTACACAGAAGTTATGATATGATAAACTGAGATCAAAGAATATCTTCGCCCTGTGAGTTCTCAAAGAAAGATCCAAGGAAGTCTTTTTCAGAAAACAAAGCCCATTCATCAACAAAGACTGTTTGATGCAGTGAAATAAGAGCTGGAATATGAAGGCAGAGGTCTTTAACTTTGGGATTATCCTTCATTATTCCAATACAGTTCTTAATGTAGCACGCCTTTGCATAAAAA-GACTATGGTCTTCACTGACTACTGGACAGTGA-AAAAGTCTACTGATTAGTCCATGGTTCTCTACTT-TTTTCATTGTTGCAGACCTCTACAATCTAACCAGCTATGTTTTCTAGAGCTCCTTGAAGCTGTAC----TCTG----TCTTACAATTACATACCAACAAAAGGCTCGTTCTTTTTATTACTATAT a score=2231.000000 s hg15.chr19_random 289404 89 + 301858 cacAGTATATAATTTTTATTTGTCAATCTTAAAAATAAAGCATAAAAAGTTTACAACAACAAGATAAAAAATAAGAAGTGTTTTtatag s mm3.chr7 3660351 82 + 134401573 CATACTAAATATTCTTTCTGAGTTAAGCATAGTAAAAAAGCATAAAATGTT-------AAAAATTAAACATCAAGAAATATATTCAAAG a score=18163.000000 s hg15.chr19_random 291072 134 + 301858 GATCGTCTATCATGA-TCTTTCT-TTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACTCATGGGTGAGTCCTTCCCCAAACCTTAGGG-TGTCATCTCCCCACATAAGAGGATTTTTCTGAAACAGGAGGGAAG s mm3.chrX 31731789 137 - 149996094 GATCTTACATCATGAGGTTTTGTCTTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACGTGGGTGAGTCCGTCCCTAAAACATGGAGTTACGGTCCATTTCCATAGACGGGTTTTATTCAGACAGGAGAGCAG s rn2.chr1 215613544 136 - 276301343 GATCTTTCATCATGAGTTTTTCT-TTCCAGGTTTCTTCCTAGTCCAGAGGATGTCAGCACACATGGGTGAGTCCATCCTTAAAACATTGAGTTACCATCTATCCCAATAGATGGGTTTTGTTCTAACAGAAGAGTAG a score=72208.000000 s hg15.chr19_random 291778 1063 + 301858 AGGAGCCTTAGAAAGTGGAAATGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGTGGCTCCACATCCTCCTCTCTAAGGCAGTGCCTCCTTCTCCCCCAGGTGGTCAGGACAAACCCTTCCTGTCTGCCCGGCCCAGCACTGTGGTGCCTCGAGGAGGACACGTGGCTCTTCAGTGTCACTATCGTCGTGGGTTTAACAATTTCATGCTGTACAAAGAAGACAGAAGCCACGTTCCCATCTTCCACGGCAGAATATTCCAGGAGAGCTTCATCATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGTCGGGGTTCACGCCCACACTCCCTCACTGGGTGGTCGACACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGCTTTCTGTCTGGGCT----TCTCACTGTCCCACCTC-CTGAATCCCAGAGCTTCTGGTGGGGGTGTCCATCAGGGTCCCATCACCCAGGCCCCAACTGTATTTGGGGTCAAGGGGGATTGAATACAGGGGAAATGGGCGCtgtggtgggaagaatcactgtcgccaatgatggctacattgtaa-accctggagcctgtgactatttatgttatagggc-----------aggggactgaaggggaaggtggagctc------------------------aggttgttgatgagttgaccttgagatggggagacagcctggactgtcctgctgggctcagtgtaatcacaagggtccgcgtg--agaggtgg--aggaagaggggagtggggattagagcagtgtagtgggagggagacgctatcagccactgtgggctttgaaggtggaggaaggccacta---gtcacagaatgcaggtggcctctaagggctggagaagtcaagagaac---tgattcgctgagtctccagagggaacgcagccctgcagatgcctt------------gatttcagcacagggagaactggatccaatttctg-tccccagaagtggaaggggtcagtgtgttctctcctgctgccatgtttgtgata--attttctgcagcagcaacaggaaaccgacacaGGAACCCAGGTCAAGGACAAGCTAGGAAACCAAACAAG s mm3.chrX 31742705 1008 - 149996094 AGGACCCCAAAGAAATAAAAATTGTAGATTTAACT---CTCAAGAATAAAAGGGATCATTAAAATTTTACTCTGT-----------TCCTTTTCTTGCAGGAAGTCATGATAAACCATTCCTATATGCCTGGCCAAGTTATGTTGTTCCTCTGGGACAGAATGTGACTCTTACATGTGACTCTCATAGAGGATCTAACATATTCAAACTGTACAAAGAAGAAGGGTCTCCAATCCCTCAGTTACATGAGACTACATTTCAGAAGAGCCAGGTCTTTGGTCCTGTGACCACAGAACATGCAGGAACCTACAGAT------GCTTCCATCCTCAATATGCTAATGTATTGTCAGCACATAGTGAGCCTCTGAAAATCATAATTTCAGGTCAGAG--TCCATATTTGGACTATCATTTCATGCCCCCTATTCTCCCAACCCTAGAAATTCCAGAAAGAGCTTTAGTCA--GTTTCATCATT---------------------ATAGAGGAATGTTCAACAAA-GAAAATTGAATATTATGCTGGG-------------------------CATAATGTAATACCCATGTATATGTACTTTCTTTTATGAAAGGATTCTTGAGTTGAAAATAACTCAAGGAAAAATTGGGCTTTGAAGATGGATATTTGAAACGAGAGAAGGTATCAAAAAATTGACATCAGGGTGAGAGACTC-----AATTAGTCT----GGGTCTGTAGAATTACAACTGTTAGTATGACAAAAATAATTAATAAAACAGTAGTTAGCATTAAAAA-GCGTTG----GCAGAGACACT-----CTATTCTTAACACTGGCAGTGATaaaaagactccaagtgccaaggaacgaatgaggcctctagaagat-gaaaggcaaagataatgaaaaatttctagtgatttgagcagagacacgtccctgcggaaacctt-------tatgacattt-ggca----------tgcttcaaaatttggatctccagaa----------tgcttttgctccatttaagaacagtatttgtgattattttttctgca--agtgattggaaattaataGAAGGATCTGTATCAATGGGCATCTTAAAACCTAGAAAAG s rn2.chr1 215634395 998 - 276301343 AGTACCTCAAAGAATTAAAAATTGTAGATTTAACT---GTCAGTAATAAAACA-ATCATTAAAATTTTACTCTGT-----------TACTCTTCTTACAGGAAGTTATGATAAGCCTTTTCTCTGTGCCTCGCCAAGTTATATTGTTCCTCAGGGACAGAATGTGACTCTTATTTGTGACTCTCATAGTAAACCTAACATATTCAAGGTGTACAAAGAAGATGGGTTTCCTATCCTTCAGTTACATGAGAAAACATTCACGAAGAGCCTTGACATTGGTCCTGTAACCCCAGAATATGCAGGCACCTACAGAT------GCTTTCATCATCAATACCCTAATGAAATTTCAGCGCATAGTGAACCTCTGAAGATCATAATTTCAGGTCAGAG--TCCATATCTGCAGTATCATTTTATTCCCCCATATCTACGAGCCCTAGAA-TTTCAGAAATAGTTTTAGTCA--GTTTTGTCATT---------------------ATAGAGAACTATTCAACAA------------TACTGTACTGGG-------------------------CACAATGTAGTACCCATGGACATGCACTTTCTTGTACTTAAGGATTCCTGAGTTTAAAATAACTCAAGGAAATATTGGGCTTTGAAAATGGATGTTTGATATCAGAGAAGGTATCAAAAAGCTGACATCAGgatgggagactatcctaaattatcct----gggtctgtagaattacaagtgttagtat---aaaaataattaataaaacagttgttagcagaaaaaaagcattat---agggagacact-----ctactgctaacaatggcattga--aaaagtctccaagtgcccaggaataaatgaggtctctagaagat-gaaaggcaaaaagaataaataatttctagtgatttgagaagtaacatatccctgtagaacatttatttatgtatgccattttggct----------tgtttcagaattctgatctccagaa----------cacttatactctttttaagaactatatttgtgata--tttttctgca--agtgattgaaaattaataGAAA-ATCTATTTCAATGGGAATATTAAAAACTGGA---- a score=27343.000000 s hg15.chr19_random 293020 383 + 301858 CCAAACAAGGAGAAGGTTGGCTACCGTGGGATCAGCAAGGGTGGGATGCTGATGCCACCACCAGGCTCCATCCACATAGGAAGGGGTTGAT-GCTCCTGGAACCAGCACCAGGGACCACCCTATGGAAGCTGGGGCCATGGAGAAGGCACAGACATGGCAGGAGAGGCTCCCAATCCC-CATCAGGAACAGGGTGTGTGGACACTGATGT---CTGCCTTACTGATGAGTTGATACCTCTGCCAGAGACTCCAATTTGTTCA---AAAGAGATTGATTCAG----GCTGCTGAGAGCCTGGACATGCAGCCTGTCCTCTTCCACCCCCACATAGACAGCAGGAAA--GAGACTAGTGGGAA---AGAGATACAACAGCCCAAGAGATGAGGCTCTCTTCA s mm3.chr7 131052362 378 - 134401573 TCAAACAGGAAGAGAATT-GATGCTAAAAGACCAGTATGGCCAGGGTACTGATGCTGTCATTGTGTT-----------GAGAGGAGGTGATGGTTCACTGATCTAGAATCATGG-CTGCCCTGTTTGAGCTGGGATCACAGACAAGCTCCAGACAGACCAGTAGACA----CAGTCCAGGATCAGGAAGGAGACA--GAAAAGCTCCTGTCAGCTGCCTTACTTCTAAGAC-ATAGC-CTGATAGGGACTCTACTTTTTTTTCCAAAAGAACATGACAGGGCATGACTAAAGGGCAGACAGAAGCCCAGCATTTCATATTTTCTACCCTCATCCATCATAGAAAATGGAAGTCTGTGGTAAATGAACAACACAGTTACTTGTGTGGGATAACTCTAGTT- s rn2.chr1 214089115 372 - 276301343 ACAAGCAG-AAGAGAATT-GTTGCTAAAAGAACAGTATGGCCATGATATTGATGATGTCATTAGGTT-----------GAGAGGAGGTGATGGTTCATGGATCCAGAATCATAG-CTACTTTGTTTGGGCTAGGATCACAGACAACCTCCAGACAAACCAGTTGAAA----CAGTCCAGGATCAGGAGGGAGACATAGGAAAGCTTCTGTCTGCTGCCTTACTGCTAAGAC-ATAGC-CTTCTAGGGATTCCATTTTTTTCT---AAAGGGCATGAAATGG---ATCCAAAGGGCACCCTGAAGCCCAGCATTTTATATTTTCTACCCTCATCTATCATAGAAAATGGAAGTCTGTGATAA-TGAAAGCTACAGTTACTTGTGAGGGACAACTCCAGTT- a score=19274.000000 s hg15.chr19_random 293403 2499 + 301858 CAGTGGGAAGGGAGTCAGGGGCTACTGGAGACAGAGGGACAGAGAAGAGGGAGGAAGACAAATGGAGGGACCTGCACCAGGGGAT---ATGGGCACAG-AAAAGACACGGAGACACAGAGAGGGAGGAGAGAGACAGACCTCTGGGAGGGGAACCCTCACTCATTCCAGGTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCACAA-CTTCTCTTTCTAGGAAACCACAGAAAACCTTCCCTCCTGGCCCACCCAGGGCCCCTGCTGAAATCAGGAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAGCACTTCTTTCTG----CACAGAGAGGGGA-------------TCTCTGAGGACCCC----TCACGCCTCGTTGGACAGATCCATGATGGGGTCTCCAAGGCCAACTTCTCCATCGGTCCCTTGATGCCTGTCCTTGCAGGAACCTACAGATGTTATGGTTCTGTTCCTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCCCTGGACATCGTGATCACAGGTGAGAGTGTCCAGACATTCTTCTCATTGTCATTGGGACACAGAGTGAAT-------GATCCAGGACTTGGAACCCCCAGGTGGTCATGAGGAAGATAAGCGTGAGATTCTTATGGAGAGAGACTGACTCGGTGAGGTCTGTACCAACAGAGACAGGGAAACAGG-AGACATAAGTACAGACCA--GGTGTCATAACAGAGGACAGACACAG-GGGCCATACGGGGAAGTAGAAAAGAGAGAAAGAGGTAAAGGAGACACTCAGACAGACAGACATGTGCCAGAGAGAAGTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTG-----TTTTGTCTCCACAAAGTGCTTCTACGAGGAGAACCCAAGGACACCCATATTTCTGACCTGAGTT--------GGGCCCTGTGGCCTC---------AGGCCTTG--------TGGCATCTACAGATGCCATGTTTATTCTGACACCTCTGCCTTCCATGCAGTGGAGCCAT-AATTATCCCAGGATATCATGGCCCCAGA-----ACACCAACCCCTAAATACTGTGTGTACTTGGTGTCCCCAGACTAGATTCTGAGGCTCATATTCCAAATAATCCTACATATAATAGGATCACTGAGAGACACAGAGATAAATCAGGGACTTCAAAAAGCAAAGGCATAAACACACAGAGAATGAGCCAGAGGAAGGGGATTGAGAGACTCACAGACACACAAAAAGAAAGAAAAGAGGGCAGAGGAGTGGAGAGAATGCTGGAAGGG-----------AGGAGAGAAAAGCCCCAAAATCAGAACCCTGAGGGAGGGGCACAAAGACAGAGAAAGATAAAGATGTGG---GGATGGATTGCAGAGATTCCAAATAGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGAGAGAGACagatgatagatggatagatagatatagataga--tgataaataggtagatgatagataatggataggttatagatacatagatgatgattgatagatgatacatagagatgatgatgatga-tgatgatgaagatagatagatagaagacacatatataaatatatagatacatagatgatacatagaGACTGACAGGCagacagagaggtaatagagagagagagagatgatacatagatacagataatacatagatgattgatggatagacagatagacaattgatagataaatgatacatagatatagatgacagataatttgtagatagacacaaaatagatagatagataatagatagaAATATGCAGAAAGTTATGAACAAGACAGAAAGTGAGAGACTCAGAATTATAGAAAAAGGAAGATCAAGTCAACCAATCCAAGGA---GAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAGCATACCCAGGGGTGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGAGAAGGCGGAAGGAGGAAATAGACATGAAGAGAGTTGGGGTGGAGGGTGAGAGAGAGAGAGAGCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTATGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGGAAACTGCC-TCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAACGTGACCTTGTCCTGTAGCTCCTGGAGCTCCTA---TGACATCTACCATCTGTCCAGGGAAGGGGAGGCCCATGAACGTAGGCTCCGTGCAGTGCCCAAGGTCAACAGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGCCACCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGCCCTGCCCTGCGTGTGGTCAAACTCAAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAACCCGTGTCTGTCCCATGTCTTATG---------ATCCTAGAGCCATAGCTGAGGAGCTTCCTGCCGATGATGGGGAGAAG----CATGGACAGATGCAGAGAGAA s mm3.chrX 118282268 2235 + 149996094 CAGTGGGAAAATACTGTGCTGCCACTAGAGACAGATAAGTGGGGAAT--GAACAAAGAAAGATGGAAGAGTGTGTGTGCAGTGTTTCCGTGGGTACCGTCAAGGGCACTGGGGAACTGACAGAAAGAATAGG-------CTAAGGGTGGAGATACCATAGCTATTCAGGATAC--------AGATAGTGCAGTCAG-----TTTTACATGCACAGTCTTTCCATCCTAATAATCTATAGGAAACTTTTCATCTTGACCCTACAAAAACCCATGGT-AAATTAAGAGAGAATGTGTCCCTGGAACATTG---AAAGATTATGTTTGATGCCTTCATTTTGATTCCCTAAAGAAAGGAAATAGAGGACTATTTTCAGATTGCTCCAGAATCACATCTTTTGGGGTGG---------GAGGTGTTTGATGCCAACTTCTCAATAGGTCCTGTGACCACTGACTGTGCTGAGAC-TGCCCACGTGATGATTCTGATCATCAAACCCGAAAGGAGCTGTCAAATAC-AGTGACGCCATTGACATCAAAATCA-AGGTAATAGAGTGTACACCTGATTATCATTCTCTTTCTGACACAGAACAGATATAGACAGATATATAGACTAGAAGTTCTGAGAGGTCATGAGGAAGATGAAGGTGGTTATCTTA--GAGAAAGGTAGCCATCTTGAGTATATTGCATACATAAACAATGAAAAATGTAAATACAAAAACAGACTATTGGTCACATAGTCCATTGTAGATACAGTGAGATGACTGGAGACATAAAGAGTAGAGATAAAGAGAAAGGGGTGAGTCAGCAAACTTGACATAAATCAAAGAA---TGTGAAATCATTCTACTAATATTCGGGGGTTAGG-ACAGTTCAAA-------TTTTTGGGGACTTCTACTTCTGCAAGACATTTCTGAGAAGAGA---TAGATATACT-GTTTGCCTGACCTGAGTTTCAATGCTGAGTGGGGTTGATTCTTGGTGAAGAGGACTTGGTAGAAGATGGTGCCCATAGATTTTCTGTCTAGTTTGAGAGTTCTTCCTTTCTTGTAAATGACCCATTACTCAACACAGAATACTATGACCCTGAATAATTGCACACAGCAGCAATAACTGTCTGCTCTATACATCTGCCGAC----------GGTTAAAATCC---------------ATGAAAAAATTATTCAAACACACTATGATGGCAAAGTAA----AAAGAAAAAAAGAAAAAACCCACAGAGTCT-------------------------TCCAGTAATAACCAGAAAATAATAAA-----GCAGAAAAATGGAAATATTTATGCATATGTTACTCAGTCAAGGGGAACTAAGAGATAGATTCAGA-----GATGGA-------AAGGGCTGAGAAAATTATA-ATATGGCATGTGTGGGATGAAAAAACTACAAAAAG---TGAGAAAGCTGAGTGGAAGAACTCAAAGTGGAGATGAAGAAATA---ATGATAGATGT-TAGATATTTCAAAACAGAGCTGGGGAATCCAGTGCTAGAACACAGTGGAGAagtt-------catacactaagaggaacaaggga------gagaagatcatcatggctcttgttcaaggt-------tagcacgcCCCTCC---------CACATTCATAGAATATTC-------------------------TGTGGTCTAAAAAGAGAGA---------------------------------TTAATAAATAGACATGTAAAAAA----------GATAAGACGTAACAGTAAATTAAATG-AATTT---------CAAAAAACAAGTAGTGGAGTAAAATGTTAGAATA---AAAAAGTGATG--------------TAAGGGACACAGTATGATA--------------------ACTTAT--AAGGACATGGTACAGAGAGAA------------GAGAGAGATAG--------AGGATGGGTAAATGAAGAAAGAAAT----------------------GGGAAGATATAGATGACAAAAATGTAAGCAGAGAGAGTGATAGTGAG--------------------------GAGTGAAT--------------------GAGCACGGGTAAGGAACTAGCCTTCTATCTAAATTTCAATCCTCATTTTCCAAGTTTATACAAGAAACATCCTCTGTCAGACCTGATGGGCCCTGTAGTGATGTCAGGATAGAACATGGTCTTGCCCTG---CTTCAGTGACTATCAGATTGATATGTTCCATCTGTCCAGGAAAGATGAGACTCAGCTACAAGAACTGATTGAGGTACAGAGCCACAAAGGTACATTTGAGGCCAATTTCCTTCTTGGTCCTGTAATCCAGGCTGAGACCTATAGATACCATGGCTCTTTCTGTACTGT-TCTTGTGTATGGTCATCCCAGGGTGGCCACTTATACTATCCTGCCACAGCTAAGAAACTCTTATGTATACCTCGTTTCTTGTGACTAACAAAATTTTAAAGCTATGTGTGAGAAA--TCCTTCAAGTGATGGAGAGAAAGTATAGTAGAGAGCTACAGGGAAGA a score=14851.000000 s hg15.chr19_random 295934 152 + 301858 TGCAGGATGGCAGACAGGGCA-CCTCCAA-ACCCTCTTGCATGGCCTGCATGGAGGCCCATGGTCAGG---GCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGACAGACCCAGAGAAGGGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGT s mm3.chrX 31747814 147 - 149996094 TACAAAATGATAGACAGGGAA-TTGCCAATAAATCCTTATCTTGTCAGCC---AGACACA---TTTGG---TATCTGTGTATCCAGACAGATATAGGAAGGAGTCAGGCCAGTCTTATGAGGAATAAGGTTGGGATCAGCTTGGGTAGATCTGAGAT s rn2.chr1 215648735 151 - 276301343 TACAAAATCATAGACAGGAAACTTGCCAATGAATCCTTATCTTGTTCACC---AGACACA---TTGAGTTTTTTCTGTGTATCCAGGCAGATGTAGGAAGGAGTTAGGACAGACATTTGAGGGATTAGATTGGGATCTGCTTGGACAGATCTGAGAT a score=3114.000000 s hg15.chr19_random 296094 192 + 301858 CCCCTCAACCTTACCCATTTCCCAGAAGCCCATCCTGGCCTCTCACCCACACAGAGAGATGTCATCACCAGCAACCCCTACACTCTTTTCTTTTCATTTTCAAAAATATTTATTGAGGTTAAATGTAACTATATAATTTACCAACTTTACCATTTTTAAAAGTAAAATCTAGTGGTCATAAATACCT-TTATA s mm3.chrX 118326702 111 + 149996094 CAC-----------------------------TTCTGCTCTCTG-CTCACATAGAG-------------------CTCTCCACAGTATTTCTATTATCTC----AGTACAATTTGAAATCCAAGG----------AGTCACCTCCTTT-----------AAGCAAA--CCA-----CATAGG-GCATCTTATA s rn2.chr1 215648893 112 - 276301343 CAC-----------------------------TTCTGATCTCTC-CTCACATAGAT-------------------CTCTTCACAGTATTCCTATTGTCTC----AGCACAATTTGAAATCTAAGG----------AGCCACCTCCTTT-----------TAGCAAA--CCA-----CATATACACATCCTATA a score=25618.000000 s hg15.chr19_random 298785 494 + 301858 ACCTTCAAGTCTCAAGACAGTGGGCATCGCACACAAAAATTATGGAGAAAAGGATCCCAAGACTCCCAGGGTCCAACATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGA--TTTCCATTGAGTAGAGGACAAGCACCCTCATT-------TCCTCACATCTCTCCTGTC-----CCGTGTTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACAGAACCAAGCTCCAAATCTGGTGAGTAAAGGACCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTggaagcc---ttggatgcaagtgttggctcaa--acctcccagctctgtgaatgagggcctgtcttccaccatctctgaactccagacactccaacagtgaaagggatCTAGGGCCACCAAAGGGCTCAGCGAAGTCTCT---------TTACCTTTAATTTCCTGCAGGTGAGACCTCCTACAAGCTAGAAGAATAATTGCCAATCTGACATCCTTCTCAGGAAAAATG s mm3.chrX 118326813 451 + 149996094 ACTTTAAATGCTCAGGACTAAG---------------------------------------------------------TAGTGAGGTAGGTACTGGTCATGGTCCAATCTCAAAGGACATTCCATC-AGAGGATGACAGACAGTGCCACTGACCAGCTGTTGTTCCCTTTCCTGTCTGTCTCCTT-CTCTACTAAATTCA-CAGGAAACTGTCCTGCATACACAGAAGCAGATACCAAAACAAGTGAGTAAATGACTCCACTTCTCT---CTTGTAAAAACATGGT--TACCAAAACCTCTTTGGGTTCATGTTTTGGCTCCATTGCCTCAATGCTCTGTAGTCTTAGCCTGGTCATCTCCATTCTCTGAATCTTAAACTCTGAAACATCGAAGGTTGTTTAGGAGCA--GAGGAGCAGTGTGGACCCTCTAGGGACGACTTGTCTCTCA-CTCCTGAACCTAAGATCTCCTTTAATTGAAAAAAAGA---GTAAATTTTACTCTCTTCCCCAAAACAATG s rn2.chr1 215649005 410 - 276301343 ACTTTAAGTGCTCAGCACTGAG---------------------------------------------------------TAGTGAAATAGGCATTGTTTACTGTCCATACCCAAAGAACGTTTCATA-AGAGGATGACAGACAGCATTACTGATCAACTCTTGTTTCACCTTCTGTC-----CCAT-TTCTAATAAATTTATCAGGAAATTGCCCTTCATGCACAGAAGTAGATTCCAAAAACAGGAAGTAAATGATTTCTCTTCTCT---CATGTAGAAACATGG---GGCCAAAACCTCTTTGGGTTCATGTTTTGGCTCATCTACCTCCAGGCTCTGTAGTCTTAACCTCATCATCTCCATTTTCTGATTCTTAAACTCTGAAATATCAAAGGTTGTTT----------ATGAACAGTATGGAACTTCTAGGGACTACTCATGTCTCA-CTTCTCCTCCTAAAATC-------------------------------TACTGTTTTTCCTAAAACAATG