##maf version=1 scoring=multiz a score=94548.000000 s hg15.chr4_random 2315 1125 + 1219494 GAATTTCCTATCATTGTGAATT--------------------------GTTTACTCTT-------TATCCCTTCCTGAAAACTGGAATCAGTGAGATAATTTG-TTTTTTTCTGTTTATCCCTCTCTGTTGCTGCAACATGATATTTCCTAAGGATAACAG-AGGGGGCATTTGGTAAGAGAACAAAAAGAAGGGAAGGGAGAGTTTTTAGGAATAATATCAAATGGAAGACAAGCTAAGAGGTGGTCTGTCTTAGCAATGTGAAAGATCTTACCACCTCATAGGCACTCCAT-CCATGGAATGAGACCGCTCCATCAGCCCTATCCAATGAGGAATCAGATAGAAATGACTACTTGCTTTGGAAGCCTGGAACAAATAAAGTGTGGGGCCTAAACTAAAATAATCTAGCAGCCATGGAAAATGCTTAAATCCAAAGGGAGGGTTTTTTTGTTCCCCTCTGCTGTATAGAGTAATATATAAACTTAAACTGTTATTTCTATGAGAGATGGAAGAACTCTTATCTGTGAGTAG--CCAGTGAGGATGACTAATTGCACCCATGCCCCTGAGGGATCTATATGAGTTGCAAGACATGACTCTGACCAGGACTGTGTTGTACATTCTTGTGGGCACTATTTGTGTGATTGATCAGCT-AATGTAAGATTGCTTAATTATGTCCTATTTCTCCCCAAACTCTAACACTCGGAAGGATGTAGTTGTGGGGTAACAGAAAAGGAAAATTCCTGTAC---AATAAGCACCAACATGCATATATAACACTGCT-AAAAATCAGACGTTGTGTCAGCAAGTTTCTTCTAGTTAATTACCAATCATTCACCCACCTCCACGTTCTGTCTGCCCTACACACTGTAATCGTAATCTGGTTTGCTTTTCAAAGAAATGTCTCACCAGACTAATTGAAGCTAGTTACACCAATGCAATCTTAAGAAACATGCTTAGGGAAGCTTTTACACCATGCCAAACAAGTGACTACTACATG--ACTGCCGAAAGTCATAAGCTTACATTCTCAGATCTGATCAAATCTGTCTTTAAACCA-TTACAATCGTAAGCACATTAAA-----------ATTTTGACAAATTATTCTAGATGCTT-TAAAGAAGTCAAATAGTGGGCATACTGCAGAGTTGACATTACACACATGACATATTTGAAA s mm3.chrUn_random 421759 970 - 117911829 GAATTTCGTGTTACTTTGGTTTTGGTTTT-----------------TGGTTTGATTTT-----CTTCTCCCTACTCCAAAACTGGTATTGGTGCGAGGATTTGATTTTTTTCCCTTTGTCTTTCTCTGCTGCTCCAGCATA--A----GTAGGGGAAACAG-GCAGTGTGTTTGGTAAG----------AAAAGACCATGCTAGTTTTTCAGAATGACGTCCA---------------------------CCTGAGTGGTGTGAAAGCTCTAACCAAC-TCTAAGCCCTCCCTCCCCTCACAGGATA-------GTTAGCCCTCTCCCATG-GATATCAGACAGAAACAAC------------AGGCCTG-----------AGCCAGTGTCTAAGGTAAAGGAACTTAGCAAACATGAAGAAGATTTTATCCCAGAGGGAACA-TACTTCCTCCTA--CCAGTGTGAAGTAAGATTTTTAGACAAACACCCTTGTCTTGATGATGAACGGACTGATGCTTGACGGTGAGTGGAATCTATGAGGCCAAATTACTTCAGCCATG-CCCTCAGGGCTCCTTGTGGG--------------------------AGTTTTGTGTGTTC-TGTGAGCAATG--TGTATGCTCAAGCAGTTAGCTATGAGACTATTTAATAATG--CAGTCTCTTCTCACCCACT--------------TCCACTGGTGGAGTGTCCACCAAGGAAATCCCATTTACTATAATGAGTACCAACACAC---TTTATCACTATCATCAGATCAGACTTTGTGTCAGCAGGCTTTACCTAGTTAATTACCAATCATTTTTCCAAGTCCACACCCTGTCTGCCCCACACACTCTAACTGT-GCCTCATTTGCTTTTCAAAGGAATGTCTCGCCAGACCATCTGAAACTGGTT------ATTCAGTCTGCAGAAACATGCTCAGGGAAGCTTC--------GCTCA--------------------CCTGCTGAACATCAC-----------CACATATCTGATCAAATC--TCTTT-AACCATTTATAACACTAAGCACATTTAACATGTTCTTACATTTCAATAAATTATTCTATGTGTTTAAAAATAAGCCAAA----GAAGACACTGTGG----------ACACACATGACACGCTGAGAA s rn2.chr14 88388721 1019 - 107821284 GAACTTCG-GATACTTTGGTTTCGGTTTTGCTCTGGCGTCATGTTTTGGTTTGGTTTTGTTGTTTTCTTCTTCTCCCTAAACAAAGACTGGTGCAAGGATTTGATTTGTTTTCCTTTGTCTTTCTCCACGGCTCCAACACTGTA----CCAGGGGTGATAGTGCAGTGTGTTTGGTAAG----------GAAAGAACGTGCCTGCTTTTCAGAATAACATCCA---------------------------CCCAAGTGGTGTGAAAGCTCTGGCCAACGTCCAAGCCC------CCGTCACAGGACA-------GTCAGTCCTCGCCCGTG-TATATCAGAAGCAAATAAC------------AGACCTG-----------ATGGGGTGTCTAGGATAAAGGAACTTAGCAAACATGGAGAAGATTTTAACCT-GAGGGAACACTACTTCCTTCTC--CCACTGTGAAGTGAGGTTTACAGACAAGC-CCCTTGTCTTGATGAGGAATGGGCAGATGCTGGTTTGTGAGTGGAAT-TATGAGACCAAGTAACCTCAGCCGTG-CCCTCAGGACTCCTGGTGGG--------------------------AGTGTTGTGTGTTC-TGCGAGCACTG--TGTACACTCCACCAGTT-GCTGTGGGACTATCTAACAATG--GAGTCTCTTCTCACCCACT--------------TCCAGCTGTGGAGGGTCCACCAAGGAAACCCCATAGACTGTAATAAGTACCAGCACAC---TTTATCACTAC--TCAGATCAGACTTGGTGTCAGCAAGCTTTACCTAGTTAATTACCAATCATTTGCCCAAGTCCACACCCTGTCTGCCCCACACACTGTAACTGT-GCCTCATTTGCTTTTCAAAGGAATGTCTCGCCAGACCACCTGAAACTGGTT------ATTCAGTCTGCAGAAACATGCTCAGGGAAGCTTC---ACTATGCTCAACAAGCAGCTGCCACAGGAGCCTGCTGAACATCACCAACTTTCACTCACATACCT-ATCAAATC--TCTTTAAACCATTTATAACGTTAAGCACATTTAATACGTTTTTACATTTCAATAAATGACTCTATGTGTTT-TAACTAAGCCAAA----GAAGGCACTGTGT----------ATACAAATGACATGCTGAGAA a score=27018.000000 s hg15.chr4_random 3757 302 + 1219494 ATGCAATTCTCTTCCCCTTCCCCCAAGTTTCTCTTTCTT---CATCCTTATTTTTGTTAATGGTTCTACCACATTCCACATTACCAAAGCTCATAACCATCGTGACCCTTTATGCTTCCCTCTTCTCCTGCCCATCATATTCAATCAGGTGCCAATCCTCTCCTTGTCTGCTTCAACACCCTGGTGACATTGCAAAGAACATTAAGTAAGAGCATTTACTTGGAAAACAAACTTGACAAACTCTCTAGCATGTCATAAAAATTAAATAAAGATTGACTATAATTATTATTTATTGCACTGTAAGT s mm3.chrUn_random 422729 283 - 117911829 ATGAAATGGT-------CTCCCTCATACTCCTCTTTTCTGTAATTCATTATTTGTGTTAACTATTCTAGCACAGTTCATGACCCCAAGATGTACAGCCATCAGGAGCCTTTATCCTGCCCTCTTTCCC-CATGATCACATACAGCCAGATGTGAATTTTA----TGTCTACATCAACTCTCTGACAAAACTGTAAGGAATC-TCGGTATTAG---TTATTTGTAGACT--ACTTGCCACCCTCTCTAACACACATTAGGAATGCAATAGC-ATTGACC---ATTATAATTCATTACATCACAAAT s rn2.chr14 88389740 269 - 107821284 GTGAAATGGTCT---CCCTCCCTCATACTCCTTTTTGCTGTAATGTCTTACTTGTGTTAACTATTCCACCACACCTTATGACCCCAAGGTTTGCAGCCATCAGGAGCC-TTATCCTGCCCTCTTCCCCTCATGATCACGTACA-TCAGATGTGAATGCTA----TGTCTAC-----------------ACTGTAAGGAATA-TGGGCACTAG---TTATTTGTACACT--ACTTGCCAACCTCTCTAACACACATTAGGAATGTAATAAC-ACTGACC---ATTATAATTCATTATGTCACAAAT a score=186606.000000 s hg15.chr4_random 12216 1761 + 1219494 taaaaaaaaaattaatGTCTACAATCCTtgtgaacaccatgaaggattatg-cctttttttcccttctcactattgtttcttcagcacctagcacaatgtctggcatatagaaagtttttaataaatatttgttgattgtacgaatGGATGCAGAAGTATTGAGTAAGCTTGAGGCCCAACTAAGTATGCTTTCTTTTATTCTGTTATTTCATAGCAAGTATATTGTAATTTTTTTCTTAATGGTCTTGAACCATCTTGAACAGTCAAAGAGAAGTCCACCTAGAGATCCAAACCATTCATCCCTATGTCTACAAAATAATGGAGTAAATGT----TGGAGTTATAGGGCTTTTTAATTTTTTCCTGTTATATGTGAATACTATTTATGATTTAATGTTCTAAGTCAAAAATTTTGATCATTTTAATCATATGCCTTTGATATCATATGTTTTGGTGGTCTTTTTAGAATTTATACAATCTAGATATTTAGCATTTCCAAGTAGAAAAATTAGAAAATATAGTTCACCTCTTTATTCATGAGCAAATAACTAGTTGCCAAGAAAA----AACTTCTTTTTGGAAAATAAAATAATCATCCACTTAACACATTCATTTTTCTCCTAATTTCTAGCCTATTGCTCTGCCAAAATAATTGACCTTTTACCACGATGGAGTGGATGCATTTA--------AAAAAATGCAAGTACATTGAAATATGTACCAACAGCTTATTAGCTTGTCATTTTCTGTCTTGGAAAATAAACACTGGACACTCTCAGGGAATGAGTCACAAAACAGAGCA-GTTTTGATGGAGGGCA-GGAGAGAGGTAGGTCTGCAGCTAGAGATGCTGTTGAAACTGGCTGGCATATAAAACAAACATAACATACTTACTGGTAATGACCGAGTTGATCCTAGAAGACAAAACAGTAGAATCGTACTCCTCATGTTTCAGATTGCTACCTACAACAACAAAAAAGTGTTACTCTTCCATGTATTTTTTT-TCCTTTTAAGAGAAAATGATACTTTAAAAACAAAAGTTCTACTTGAAACATGGTCAATTAATGTTACCTTTGGGTCCACGAGGCAAAATGTACAATACTCAAGGTCCAGTTGGTTTCTCAAGTTTACTCTGGTGAAAAATTTTACCCTTCAATGATGTATGTGTTTGTAGAAGAAATTTAAACTCAGTTCCAGGAGATTGG-AAACTGAGAGACCAATCAGGATTTAGCTGTCTGTTAAATCATTTGTTTTTTTTTCATTTCCCAACACTTCATTAGGTGGGTTATTAGCTGCAGACATTATGTTACCCAATGTCTACCATTTGAATAGAAGGTGTTTCAAGGAGACAGGCCTTATGTAATTAAAAAAAGATGCAGACAATAAAATAATTTAAATGCTTCTTCACCTCCTTCTTCTTCCCAAATGATTTCTCAGATGTACGTGTTTTATCATGTAAGTATGAATACATAAATCAAACATCAAAATATAGGGCTCTGTACAAGGTTTA-Aaaaatgaagtctactatgtagattgctctggaactta--tgtttacttaacaaataatggacaactttatgtgttagtacatacaggttta-ttttatttatttaatgggtacacatcattatat-cacattttgatgaacatttaatccatttccagtttattttgtaattacaaaggtatcacaagcaccattcttataaaacctttttttcacacatatgggagtattttcgtaggtgttattcttagaagtaatgtatcagaggat s mm3.chr5_random 664581 1623 + 1172935 TAAACAATGATTTGCTCTGTGTAGCCACTGTGACTTATGTCAGGGATCATGTCCCCTTGTTTTGTCCTCATCACTGTGTTTTTAGCAATCAGGGC-ATGTCTGTTGTCTAGAGAGTTTTCAATGAGTTACTGTTGATTGTACAGGTGAGTATG-----------------------------------GTTTCTTGTCCTTC-----GTTCACAGTTAATCGATTGCA---TCTTTCCTGAATATTTTAGG-CACTGTG-----TCAAAGGGAAGTTCATGTACAGAT-AAAATATTCCATCTCTATGTCTATATAATAACTTAGGACAACTAAAGTATAGATGGAAGGAACACCAATCTCCTTCCCCCAT-TTTAAATAT--TTTGTAATGATATGTGTAAAATAAAAAA-GTTTGTCATTTT-ATAATGTGTATCAAACAC------TTGTAG-------CTAAGAGTTTATCTTATTTGTATGCTTTGT-TTATCAAGTAGAAAAATCAGAAC-CATGATTTACTCTTTTAGTCATGAGCAAATAAACAGTCCCCAAGAAAGTCGTACTTTTGTTTTGGAACATAAAATAGT-----------------CACTCTGTCCCTCAGGGCTGCTATATTGCTTTGCTAAAACAATTGAAATTCTTCCATGTTAATGTGGATGCATTTTTTTTTTTAGAAAAATCCAGA-ATGTTGAAATTCGCACTAACATCTTATTAGTTTACCTTATTT-GTTTTGAAAATTAAAT-TAGGAAACTT---AAAAAAAAAACAG--AACAGAGTA-GTTTTCTTGAAAGGCACGAAGAAATAAATGGCTGTAAGGAGACATG--GCTTAGGCTGGTCAGTACATAAAGTAAAGATATCACACTTACTGGTAATGACTGGGCTGATCCTAGAAGACAAAGCAGTAGAATCATGGTCTTCATGTTTCGATTTGCTACCTATAAGAACAAAATTATGTTACTCTTTCAC---TTTTTTTTAACCTATGAAAGAAGATGACA-TTTAAAAATGATCATTCTACTTGCAATACGGTGAAGTAATGTTACCTTTCTG-CTACCAGGCAAAATG----ATATTCGAAATCCAGATGACTTCTCCACTTTACTC-GGTGCAAAA-TTTATCTTTTGCTGATT--TGTGTTTGTAGAAGGAATTTAAGCTCAGCTACAGGAGACAGACAACCTGAGAGACCAATCAGGACTAAACTGTCTGTGAAATCATTTG-----GTTTCATTTCCCAACACTTCATTAGGAGGGTTATTAGCTGCAGACATTGTATTACCCAATGTCTACGATCTGACTAGAGGGTATTTTAGGGAGACATGCC-TATATAATTTTAAAAAAGTGCAGACAGAAAAAAAAGACAATTG--TCTTTACTTTCAACTCTTTTGCAAAA----TTTTGAATTTACTGGTTTTATCATATAAGAATGAGCA---------------AAAATATAGGGCTCTCTGTATACTTTATAAAAATAAAGGTTATTATAT-GATTTCTCCAAACCTTACTTGTTTCCTTGA-AAACAATG---AGATTTATGTGTCAGTAGACATAGATTAATTTTTAGATATTTAATGATTAAACTGAGTTACACTTTCTTTTTGATGTATAGATAATCTGTT---ACTCTATTTTTACATTATAAATATGTTATAACAAATATCC-----------TTTCTTCATATGTA--GCAGTATTTCTATAGGTGTCACTTCTAGGAATATTA----AAAAGAT s rn2.chr14 19449626 1590 + 107821284 TAAACAGTGATTTGATACATGTAGCCACTG--AACTCTGTCAGGGATCATGTTCCCTAGTCGTGCCCTCATTCCGGTGTTTTTAGCAATCGGGGC-ACGTCTGTTGTCTAGAGAGTTTCCAGTGACTCGCTGTTGCTTGCACAGGTGAGTCTGAAGG-------------------------------GCCACCTGAGACT------GACCACAGTAGATCTATTGCC---TCATTCCTATCTGCCTTAAA-CATTGTGA----CCAAAGGGAACTCCATGCAGAGAT-GGGACACTCCATCTCT--GTCTGTATAGTAGCTTAGGACAACTAAAGTGTGGGTGGAA----CACCAACCCTCTTCCCCA---CTTAAA--------------ATATGTGTTAAATAAAAA--GTTCACCATTTT-ATAATGTGCATCTCACAC------TCCTAG-------CTAAGAGTTTATCTGATTTAGATGCTTTGT-TTATCAAGTAGAGAAATCAAAACGTATGGTTTACTTTTTTAGTCATGATCAAATAACTAGTCCCCAAGAAAATCATAATTTTGTTTTGGAACATAAAATAGTTACA-------------CACACTGCTGCTCAGGTCTGCTCTGTTGCTTTGGTAAGACAATTAAAATTCT-CCATGACAATGTGGCTGCATTTTTT------AAAAAATGCAAA-ATATTGAAATTCATAGTAACATCTTATTAGTTTACCATATTT---TTTGAAAATTAGAT-TAGGAAGCTT---AAAAATGGGTCAC--AGCAGAGCGTGGTTTCCTGAAAGGCACGAAGAGATAAATGGCTGTAAAGAGACATG--GCTTGGGCTGGTCAGTACATACAGCAAACACAGCACACTTACTGGCAATGACTGAGCTGATCCTAGAAGACAGAGCAGGAGAACCACGGTCTTCATGTTTCGATTTGCTACCTAGAAGAACAAAATTATGTTATCCTTTCAC---TTTTTCT-AGCCTAAGAAAGAAGATGACA-TTTAAAAATGACCATTCTACTTGCAATATGGTGAAGTAATCTTACCTTTCTG-CTACCAGGCAAAATG----ACACTTGAAATCCAGATGACTTCTCCACTTTACTCTGGTGCAAAA-TTTATCTTTTGCTGATT--TGTGTTTGTAGAAGGAATTTAAGCTCAGCTACAGGAGACAGACAACCTGAGAGACCAATCAGGACTAAACTGTCTGTGAAATCATTTG-----GTTTCATTTCCCAACACTTCATTAGCTGGGTTATTAGCAGCAGACATTGTATTACCCAATGTCTATGATCTGACTAGAGGGTATTTTAGGGAGACATGTC-TATATAATTTT-AAAAAGTGCAGAC--AAAAAAAAGACAATTG--TCTTTACTTTCAACTCTTTTGCAAAATA-TTTTTGAATTTACTGGTTTTATCATATAAGA--GAGCA---------------AAAATATAGGGCTCTATGTATTTATTATAAAAATAATGGTTAGTATATGGATTTCTTTAAACCTAACTTGTTT-TTTGA-AAACAATG---AGCTT----TGTCAGTGTACATAGATTAATTTTTACAAATTTAATGGTTAAATTGTGTTACAC-TTCTTTTTGATGTATAGATAATTTGTT---ATTCTATTTTTGAAT------TATGTTGTAACAAATATCCTCATAAGAGATTTTTTGCATATG----------TTGCTGGAGGTGTTGC-TCTAGGAATAGTA----AAAAGAT a score=2238.000000 s hg15.chr4_random 13977 375 + 1219494 atgtacatttaagtaatGTATCAGAGGATATGTACATTTAAGTAATGTATCAGAGGGTATGTACATTTAAGTAATGTATCAGAGGGTATGTACATTTAAGTAATGTATCAGA-GGATATGTACATTTATGGCCAAATGGTGAATGGCTTGCTT----TATATTAAACAGGGAAAATGATACTATAACCTAAGCAAAACACAGGGAATCAACTGAGATTTCTTTTACAAGAAGAACAGTTAAGTGCTACTTAACATTTTACCATGAAGCTGTGGGCTTC----ACCTGGAATTTTTGAGATATGCCCCAAAGGGAGGTGGAGGTCTGTTAATCAATTTCTGAGACCATTTCAATGATGAGCCTGTGTCGCACCAGGATTTGGGAT s mm3.chr5_random 666204 338 + 1172935 TCAAACATCTA--TAATTTA--AATGAATATGAAAAATTGAGAATTCTTGAATAATTTGTTTGATTTTTAATAATGAA--AAATgggaaggggctgcaatcagggtgttaaatgaataaataaatTAATGGAAAAAT-ATGAAGAGTTCACATGGGGGGGAGAAATAATGAAAAGAGATGATGTGATATAAGCTGAAGACA-GGAAGCTACTGAGGTTTCTTTCAAAAGATGTTCAGGTCA-------------------CATCTATCCATAGGCTTCCAGAACCTGGGCTTC----------------AGACCAGGCAAAGTCTCTTCAGTAATATCTGAGATGAAATCAATGATGATTCTGTCT---GCCAGAATTTCATAC a score=23829.000000 s hg15.chr4_random 14352 312 + 1219494 TTGACCTTTAAAAAAGAAAAACAAAAAAAA----------------------CCTATAGAGTGTCTATGAATGGAAAATTAACTGAGATGATACATTTTTTTTTCAAAGCTTCTCTCTAACTG--TTCAATTAATCTAT--ATAATCAATGTTTGTTACTCTGATACTCTGTTAGGAATGG--GGAACATTATGTAGGAGGAGAAATACAAGATCAACA--------AGTATGTGCAAATATAGGAGTATT--CAGGTGTAAGAAAGAGTGTGGTGAATTTTGTTGGGGGCAAAAGGACAGGAAAAGCTTAAAAGAGGAGATCATCCTTGAGTTTGGATTTGAAGAA---------TAA s mm3.chr5_random 666542 305 + 1172935 --------------TGAAGACCAGATGACATTCAGTGTTGTCTTTTCTTT--GGTGAGGAATGTCTGTTGATGGAAAATTAGAGATGATGAGGCATTTGCCT----AAGTTTTTCCTTAAACAAACTCTACTCATCTGCTCATGACTGATGACTGTCA----GATAATCTGGTAGGAATGGGGGAAACACTGTATGGGAGGC------TAACACTAATAACATGTGTACTAAGGTTAACAATAGGAGTGTGCACAGGTGTGAGGAAAAGCT-------CTCAATtggggg--------cagggaagactttatggaggaggtcacttttaggatgagttttgaagga---------AAA s rn2.chr14 19451961 319 + 107821284 --------------TGCAGGCCCTGTGACATGCAGTGTTGTCTTTTCTCTATGATGTGGAATGTCTCTTGATACAAAATGAGAGATGATGAGGCATTTGCCT----GAGTTTCTCTTTAAACAA-CCCTACTCATCTGCTAAT-ACTGATGACTGTCA----GATAATCTGCTACGAATGGATGAAACACTGTATAACTAACACTA-ATAACACTAATAGCATGTGTAGTAAGTTTAACAATAGGAGTGTGTACAGGTATGAAAAAAAGCT-------CTTGATtggggg--------cagggaaggctttacagaggaggtcacttttaggatgagttttgaaggacggagagaaAAA a score=13011.000000 s hg15.chr4_random 15076 119 + 1219494 AGAGATTGGGCTTTAGGTGGATTTGGAGAATAAGTATAATCCACAAGACAGACTAG-CATGTTAAAGTGGCTGATAGTGAGAGGAGCAATGAGACAT-AGTGCTGAAGGATGTGGAAGGAA s mm3.chr5_random 667210 119 + 1172935 AGACATAGTACATTAGGTGGATTTGGAGAATAAATATGAGGAGAAAAACACAATAGACATGGTAAA--AGTTAATACTGAAAGGATTAATGGAATATAAATGTTGCAGGACATGAAGGGAA s rn2.chr14 19452655 113 + 107821284 AGACAGA---CATTAAGTAGGTTTGGAGAATACACATGATGAGCAAGGCACAGTAGGCATGGTAAA---GTTAAGACTGA--GGATTAATGGAATGTAAATGTGGCGGGACACGAAAGGAA a score=135741.000000 s hg15.chr4_random 15630 1017 + 1219494 TTTTTTTTTGGGTGGAGGTAGAGTTGAATTTTATGTCACTGTTGT-TCTTGGCTTAGGTGAGGAGACCTGTGTTATAGTGTTAGTCTAGAATGTGGTTCTATTCAATAGTTTATTTGAATTGAATAATTCCTCGTGACTGGGCATCAGGTGATTTAGGGACCTCACAGTGAGTCAATTGCTTGTTGCAGACATGACTCCAACCCTCAGCGGGAATCGGACATGCCCTAGCCAGGAAACTGAGCAGTCAGTGGGATTAGATCAAAATAAACAAGCAAAATTAAAAACACTGAGTAATTTCTTAGGCAAGAAATTTTAAGTCTGAAAGCAGACAACTTGCAATAATGTGATTACGGAGTTGGGAGTCAAGAAATACATATTATAAAAGGAAAAGAATTCTTAAATCATTCCAAGACAAGGAGACATCAGCAAAAACAGTGAGATAATTTATGTTTCCAAAATGACATAGAACATCAGAATTCATTAAAGTGTTTTATGAACTATAGGACACATCTCTTA---------GCCCTTTAGTTCCAGGCATTCCTT--------AAT-CTTTCTTATTAGCTTTAGTTGTA--------------------------AGTTTCTTTGGGTTATGGACCCTTTTGAGAAGCTGATTGAATGCACATGTCATCTCCTCAGAAAAATGCATATATGCTTATGAATGTAATGATTATGAAATAACTTCAGGGATTTCATGGATCTCCTGAGAGCCCAACTATAAAGAAACAGGTTAAAAATCTCTGGGTTAGAGGAGTCTTAGTGGAATTCCTTAGTGATTTGTGTCATCCCTGTGCTTTCTAGGATTTCTCAAGGCAAGAAACATACCCTCTCTCCAACTCCATCACACTCAATGGATATAGGAAGATCTAGGATTACCCAGACCTGAGGCACTCTTTATGAATCTCAGTCTAAGAGCATCTTTTTGACAATGAAAGGATAAAACAGACTGGAAATTTTCTATATTTCCTTACACCACTTGGTAACTCACAACATTAAAAGGATTCTGCGCACAAGATTATCATTAATTAT s mm3.chr5 62094049 973 - 149719773 TTTTTGTTTGTGCAGAGGAAGAATTAAATTTCATGTCATTGCTATCTCTAGGATTAGGTGGGGAGACCTGTGTTCTACTTGCAGTCTAGAGTATGGCTCCAGTGAATAGCACACTC-AGTTGAATCACTGCCTCTGTCTGGGGCTCAGGTGATTCAGGGACCTCACAGTGAGCACATTACATATTTCAGACATACCTCCAGCCCCAAGCTGAAGTGAGACATGTCTTAGCTAGGAAACTGAGTAGCCAGTGGGATTAGACTGAAACAAGTGGGCAACATTATGAAGGCTGAGTAATTTCTTAGACTAGAAAATTTAAGTCTGAAAGGAGGTAACTTTCAACAATGTAATTATGGATTTGGGTATCAAGAAGTACATACCATGAAAGGGGAA-AATTTCTAAATTGTTCAAAATCAAGGT-ACATCAGCA---------AGATAATTT-TGTTTCTGAAATTACTTTGGGTAGCAGGATTTATTAAAGGGTTTTATGGACTACAAGTGACATCTTTTA---------GTCTTGAAGGTCTAGGCACTTTGT--------GATGCTTTTTAATTGGTTTTAGTTTTATA------------------------GCTTTTTTTGGATTATGGACTCTTT---TAAGCC-CTTCAACCTATGTACCATCTTCTCAGAAAAATACATCTATAACAATGAACATAATGCATACCAGACAGTGACACAGGTTTGATAGACTTCC---ATACATAACGATGAAGATATAAATT--AAGCCTCTGATTTAAAGGAAACTTGACGGAAATCTCT-GAGATTTGTGCTGTCCTTGAACTTAATAGGAGTTTTCAA-TCAAGAAATGAATTCTCTCCCCAATTTCACCATACTCAGTGCATATAGGAGAAGCTGGAATTATCTC------AGATGCTGCTGAGGAAGCTCAGTCCAAGAGGAGCTCTTCAGCAATGAAAGGGTGAGGCAGATTGAAAATC----CTATCTCCTT--------------CTGTCAATGTCACAAGGGTGCTGGGTGCATGATTCCTGTTGATTAT s rn2.chr14 19453372 984 + 107821284 TTTCTATTTGTGCAGAGGAAGAATTAAATTTCATGTCATTGCTGTCTCTAGGATCGGGTGGGGAGATCCGTGTTCCCTTTGCAGTCTAGAGTGTGGCCCCAGTGAGTAGCATGCTC-AGT-GAGTCACTGCCT--GTCTGGGGCTCAGCTGATTCAGGGACCTCACAGAGAGTACATCACTTATTTCAGACATACCTCCAGCCCCAAGCTAAAATGAGACATGCCCTAGTTAGGAAACTGAGTAGCCAGTGGGATTAGACTGAAACAAGTAGGCAACATTATGAGGGCTGAGTAATTTCTTAGACCAGAAAATTTAAGTCTGAAA----GTAACTTTCAACAATGTAATTATGGAGTTGGGCATCAAGAAGAACATACCATGAAAGGGGAA-AATGTCTAAATTGTGCAAAATCAAGAC-ACATCAGCA---------AGATAATTT-TGTTTCTGAAATTACCTTGGGTATCAGGACTCATTAAAGGAGTTTATGAACTACAAGTGACATCTTTTAGCCTTGAAGGTCTTGAAGGTCTAGGCATTTTGTTGAAGGTCTATGCCTTTTAATTGGTTTTAGTttcatcttcttcttcttcttctttttttttttttttttTTGCTTACGGACTCTTT---GAAACCTCTGCAACCTATGTACCATTTTCTTAGAAAAATATATCAATAACAGTGAACATAACACATACCAGACAGTGATGCGGGTTTGATAGACTTAC---GTACATAATGATGAAGACATAAGTT--AAGTCTCTGATTTAAATG------------------------TTCATGCAATCTCTGAACTTAATAGGAGTTTTCAA-TCAAGAAATGTATTCTCTGCCCAGTTCCACCATACTCAGTGC--ATAGGAAAAGCTGG-ATTATCCT------AGATGCTGTGTAGGAAGCTCAGTCCGAGAGGGGCTGTTCATCAAGAAAAGGATGAGGCAGTCTGGAAATC--CTCTCTCTCCTT--------------CTGTCAATGTCACAAGGATGCTGGGTGCAGGATTCCTATTGATTAT a score=4362.000000 s hg15.chr4_random 16648 40 + 1219494 GTAATAGCTTGATTGAACAAATTAAGTACCTTGATAATTG s mm3.chr6 61866165 31 - 149950539 ---------TGATTAAATAAGTTAAGTACATTAAGAAATG s rn2.chr4 65817585 32 - 183307734 --------GTGATTGAATAAGTTAACTATGTTAAGAAGTG a score=32904.000000 s hg15.chr4_random 16688 433 + 1219494 TAAACGACATTCAGCATTTCTTG--------ATGCATGGCAATCCCTGATACCTACTAAACAGAAGCCTCCACTGTACTGGACAAGGTATTGTACA------AGGTGCTCGGGTACAAAAGTGAGTAAGAGGAAGCCCTTATTTATGTTCTTGTGGAAAATGCAGCAAGTCTCATATCACTATATAATGTGGTAGAGGCAAAATGGATGTATGCACAAGAG--------GCTAGAAAAGATGCATTTTGATCTTCTTTTTCTgcattcgttcatgttatttcctctgcctggagtcctctttttcatccttgactgtcaatgttttactcacccttaaagatccttctttatgctaccaccttcatgaagcctttctttttgttcctctcatttggagttagacttttctttctctgagATGCTTTTGGAATTCATGACTTTGTTATTTATTTTA s mm3.chr5_random 670831 384 + 1172935 GGAATTGTACCCAGCCTTTCTTACATACTACAAGTATAA-------TGGCACCTGTTAACCAGAAA----------------GAAG---TTGTATACGTCATAGGTGGT-ACGTACCAACATGATAAGGACAAAACCCATCCTTATATTCTTGCAGAAAACCTGGCAAGTATCCAAGAATCA-TAAACGG----------------------TCAGCAGAGA-------GCTGGA----GTGCAGAGTCATCTTATATTGCTGCATTTGCTTATGATGCATCTGCAGCTTGGAGTC-TCCTCCTCA--------TGCCTTTCTCTTATCAAATATCAAATGTTCTTCTTGATTCTAGCACCTTCGTCAAAACATTCT-ATTGCTCTCCTGATTTGGGGTCAGTCTATTCTTTTTCTGAGGCAGTACTGGAACTTATGACTTTCTTCATAAATTTA s rn2.chr14 19455303 387 + 107821284 GAAATTGTACCCAGCCCTTCTTA--------ATGTACAG-------TGGCATCTGTTAAGCAGAAG----------------CAAG---TTGAACATGGCGTAGGTGGT-ATGTACCAACATGATAAGGGCAAAACTCATCCTTATATTCCTGCAGGAAAACCAACAAGTATCCAAGAACCAAGAAATGGG-----------------TCTCTCACAAGAGATCAACGCGCTGGA----ATGTACACTCACCTCGTAAGGCTGCACTTGTCTCTGATATGTCTGCTGCGTGCAGTCCTCCAGCTCA--------TGCCTTTTTCTT--CAAAAATCAAATGTTGTTCTTGATTCTAGCACCTTCATAAAAGCATTTT--TTGCTCTCCTTATTTGGGGTCAGTTTATTTTTTTTCTGAGGCATTACTGGGATTTATGACTTTCTTCACAAATTTA a score=21192.000000 s hg15.chr4_random 19069 1119 + 1219494 tgaagaagtgactgaggagaaaaacttggagagggtggtttttatcta------------atgcatagaaagtccttttttttttcttttagaacagctaaatgatcaaagtgtggaaggttgctgagagatcaaatacaataacaaaactgaaatgtgttcactgaaattagcaacaataggtctg--gtaaatttaggaattggagtc--gagggtgaaagctggattagagtatgttgagtagtaaatggaaggtgaa-----gaataaagaattgagcaatatctgtaggcaactcaggctttgaagacttcagctgtgaattggtgtggtgagatatagtattaaataaaggggaatgtggtggttctttcttttctttatttctcttcctttccattcttcttcctttctccccctcttctcttcttcccttccttcttctttttcaaaaataa-gacacttaaataa---------ttatgggaaacctccccaaaagaagaagtggctgaagatataaaacagggaaatatttacaggaaaaa--aggctatggagagaggatgtttttggatttagagcacaaatggaga--ttgacctttgactaggtcattgtaacaggaataaaga-agaagat--ggaacagatgcaggtagatttgtagatagggtgacagtgaatcaaaggaatcaatttggcaacttcgttt-attctgtgaaatattaggcagtt-catttgctaagagttggaggagaagggaAAGAGACCAAGATTTTAGATTGAAGAATAGATAATATAATCCTTTGGTGTGTGAGTGAACATGCTAATACAAGACTACTGGTCTGGGGCAAGCATTTCTAGTAATTCCAATTGTTCTGCTGTGTGGTTGTCTCCAGTAACCCTCAGCATCTTTGTTACAGTGATGCAGTTCAGATGGTTGTGTTTCTAGTGGGATGTCT----------GTACCCTAGTCACA---GTGTTATGACAA----------ATG-------TACAACTGGCTAAAGATCC-TCATTTGGGATTGtccctcctcagatctcttctccttccctgcttcttccagccaatttcctcacctgccttaattgagacagcatcaagaaaataaaagctatta-taagagaactgtttta---tcttttcaacctacctgct s mm3.chr5 62099002 1081 - 149719773 tggaggagggattggagagagaaa---agggaggggagaaatgatgtagatatcataaACATACATGAAA------------------TTAAAAAGATCAAAT-ATCAGAGCATGGAGAACTCCTCAGATGTCGGGCATGATAAC-----TCAATTGTGGCCACCTAG--TAGCAG-AATAGGAAAGCAGTACACTATGAAACTAGAGTCATGAAGATGAAGACAGAATCAGAGAATGCCGAGATGTGAATGGAAGGCACATCAGTGGACACAGGAA-GAACCACGTCAGCAGAATCATCAG---------ACTTCACTTAGAAATCTGTGTGCTGTGGTTGAATGCTGTCTAAAGGGG------------------CTGCATGGAGTCTCCTTCTTTGTATTTCATTTCCTTTCTTTGCACTTTCTGTTCCTCTATTCTTCCTTC-----AAAACATAAAGATGCTAGAATACATACATCATTTATAATAATAATCCCAAAGGGGATTAGTAACAGAAGATA-GAAATAGCAAGGTATCTACAAGGACAACAATACTGGGAAGGAAGGGTTGTTTTGGACATAGAGCTCAAATGGAGACATTGGGTTTTGACTGTGTCATCACAAGAGGAATAAAGGCAAAATATCAGGCACAGATGCAG-CAGCCTTGTAAAT-----------------------------------CTTCATTTTGCTTTTTAAACTATTAGACAATTTCATTTGGTAGGAGTTGGGATACAAGAGAAAGA--CCAATATTTAAGCCTGAAAAATACATTATGTGGTCCTT--ATGAGTAAGTGGCAATGCTAACATGAGATTAGTGGTCTGGG-CAAGCACTTTTAGTAATTCCAGTTGACTTTATGCATAGCCATCTCCAGTAATTCTCAG-AGGTTGGCCATGAAGATATTGCTTAGACAGCTGTGGTTCTAGGGGCAAGACTTCACTATTTCAGACCCTGAGCAAATGGTTGTTAAGACAATCATTGATTTATGGTACCACTGCAACTAGCTAAGGACCCATGTTTTGGGCTTGTTTCTCTTTATATATCTTCTTTCT-----ATTCCTTTAGTTCATGTCCTAACATCCTTTAATTGAG-CAATATTGAGAGAAAAAAAGCTATCAGTCAGAGGGCTTTCTTGTTTTCTTTTCTTCCT-CTCACT a score=237.000000 s hg15.chr4_random 20188 13 + 1219494 cctggactcaatt s mm3.chr5_random 674003 13 + 1172935 CTTCCTCTCACTt a score=2919.000000 s hg15.chr4_random 20201 186 + 1219494 tcttgttacaatgaaataaatatctttactcttactaaagaacaactcctc---------------tactattgttcccattcctttttactttcttaaaggcttcactttttctgctatctttccatttccttgtcttggaccatttccatcagcatatcaacatgatccacattaagaaatgaaa-caaaaccctcttga s mm3.chr5_random 674167 173 + 1172935 TCTTTTGTCTTTTAAATAAACCTTTTTTACTTTAATGGACAAGATGTCCTTAAATTGCAATGTTCACACCTTTGCTTCCATTCTTTCCTGCTTTCAGAAAGATGTCA-----------------------------TTTAGATGATTTTCTTCGGGATACCAATGTGCTTCATATTTTGAGACAAAACCAAAACCCCATTGA a score=11609.000000 s hg15.chr4_random 22159 801 + 1219494 tctcctcaagtgcatcagggcctttgctcttgcttttccctctgtctgaaatctttggctccgagatgtttgtctggctggttccttttcaacctgtaggacttgacttaaatgtcttcttttcagagagccctttcccagcatgctttagtgcccaaggaagtgctctctgtcactttccatcacatcatgctgcttatttccttcaaaatactaatcaccacctctaataaccttgcttatatattatttacttgcatattgtgcacccttcctggctagaatgcaagtttcatgaaaataagggcatagtcttttccactactgtcttggtgcctggcacataatggttgaaaattcttgaaaaatatttatcgaatgaatgaatgaggcatttggtgtggtggaaacagcactgtaattagaattagacctgtttacacttcacttccgactttgttatttactgactggaaagt---cacaggcaaattaaggaacgttgctaac-ctttaagtttttcatctataa-attggcattttcatcttcaccttatagagttgacagtttgtatgtctatgaacacttagcaccatgcttggctcctagtggatacttaataTTAATTTTCTGTTTAAGAACTGAGACCCAAAGCTAAGCTGACAGTAGAGTAGTGTCTGTG-GGAAGGACATGTTCACTAGGTCACTTTGTTGGTGGCTTTAAGCAACAAAAGGTTACTTCTTCACAAAAGATGAAGGGCTTTTCTCCATCCTTCCTTTATAGCTTCTTGGTTCTCCAGTTCTT s mm3.chr5_random 674383 652 + 1172935 TTCCTTTAAGCACAATAGAGCTGTTGACCTGG-TTTTACCTCTGTCTGAAATCCTTGGCTTCTAG---TTTGTTTGGCTTATTTCATTTCATTCCTTACAACC-------AATAGTCTCT-----GACAGGCCTTTCCAAA-ACATTCCAGTGCCCATGTAC-TGATCTCTGTCACCTTCCAACATGCCACCAAGCTCATTTCCTT----------GTGATCACTTCTAACAAAAA-GTGTTTGCATTGCTTA-TTGAATACCTGGCAGCTGTCTTGATGAGTAAGCACATTTTATGAAAGTA-GGACTTTGTTTCCTCTACTGCTGTCCTCG-GCCTGGCA--TAATGGTCAGG------TGATGAATACT-GTAAACTGAGTGCTTGAGG----TGGAATGCTT--------------ATCAGTATTAGAAACATTTGCATTTGAATCACTGCTTTGCTATTTAGTAA----AAAATATATTTAGGAAAGTTCAGTTATATTGCTACCATTTTAAGTTTTTCAAATAGAAGATAGGCATTTTCCTTCTCGCCTTA--AAGTTGA-GGTGCATATGGCTGGAGAAACCTAGAGTGATCCTTGCCTCCTAATGG-TGCTCAGTGTTAATTTTGTCATTGAGGTTTAAGATCCAACGTTATGCTGA-----GAGTCATTTTTTTGTGGATGAATATGCCCA-----------------------------------------------------------------------------------GAGCCTGTTGGGTTCCCAGGTCCT a score=19016.000000 s hg15.chr4_random 22960 211 + 1219494 GATTACAGTTGCGTTTTCTTAGCACGTGTGGGTTAAGAACAGTTAGCACCACCAGTCAGTTGT---------TCCTG------GGAATCCTGTATTTCTGGAGCTCAACAATTCACTAGAGAATGTACACAGTTCAGATGGGGCTGGGAGCAGCTTATATAACCTGACTTGAGATCCCCACCCTCTCTCTATCATTCATGCTACTAGCTGGAAATTATAATGTTTC s mm3.chr5_random 675035 217 + 1172935 GATTGTGAACCTGATTTCTAAAC--GTGTTGTTTTAAAAACTTCAGTATCACCCATCCATTTTATAACAGCCTCATATATTACAGATTCTTGTGTTTTGGGGGC---AGGAACCACTAGTCAATATGTAAAGTTTAGATGCAGCTAGAATCCCTTTCTATAACCTAATTCCAAGTCTTTG--TTCTTTTGATCTTTTATGCTATTAACAATAACTTACC--TTTTT s rn2.chr14 19460546 214 + 107821284 gAGTGTGAACCTGATTTCTAAACATGTGTTGGCTTAAAAATGTCAGCATCATCAGTCAACTTTATATCAGCCCCATATATTACAGATTCTTGTATTTTGGCAGC---AGAATCTACTAGTCAATATGTACAGTTTAGATGCAACTAGGATCCCTTTGTA-----TAATTCCGAATTATTT--TTCTCTTGATCTTTTAAGCTATCAGCAATAACTTACA--TTTCT a score=468.000000 s hg15.chr4_random 23171 35 + 1219494 TGACATAATATGTA-CAGCTATTTTGCCCTTTGTTT s mm3.chr5_random 675252 33 + 1172935 TAAAAAAAtttttattaggtatttt---cttcattt a score=7728.000000 s hg15.chr4_random 23206 102 + 1219494 TCTCATATCGCAATATTCAGATAGCCCATCAATTCTATCTTTGCATAATCAAAAGCAGTTAAATAAAGAAGCAGTTCTTTCCCTAAATGGAATGTTACTCCT s mm3.chr5_random 676072 90 + 1172935 -----------ACTACCCAAAGGTCATCTTATCTC-ATCTGTGCATGCTCAAAAGTGGTATAATAAATGAGCAGTGTTTTCTTTCAAAGACTTTCTGTTCCT s rn2.chr14 19460813 86 + 107821284 -----------ACTACCCAGAGGTCATCTCATCTC----TGTACATGCTCAAATGTGGTTTCATAAGAGAGCAGTGATTTCTTCCAAAGGATTTCTATTCT- a score=52942.000000 s hg15.chr4_random 23415 754 + 1219494 cttctacatgtataATTCAATGGAGAAATAAAATCGAACTAGCAATGATGAGTACTATTGCTAATATATGCTCATCACTGATATAAAGTGGAGAAGATAGGTAAAACATTCAAGTGTTCTTTAAGTA-CTATTTTGGAAGTTATCTGACAAAGTTGTTGTATTTGTCCACAGAAATTATGTAAGGATGCTACTTACTGTTCCTTGTTTTCCATAGTCCCTGGCCAAGGTAAAGTACTATTTACTCTCAGGTAGTTCCTAGGGTTGACAGGTTTGCCTTGGAAGATTAAGGATATGTGACCTGCTGCTTATAGCCTAAAAGAGTGAGCTTCACTTCTAAGGTAGTTGATCATCAGAAATTGTGTGCATAATGTATTATTATTTTGTTTAAGTCTTTTGCTGACGACAATGTTGTTCTGTTTTTAGCATGTCTGTATTATTCTGTATTCTCTGTATGTGCTATTATATATTAGTAATACAG--TTAGTAAAAAAATGAGATTGCAG----TAATCCTGAGTCACAGCAATTTAAGAAGATGTGATGCAGTGTGATGTTTGCTGTTGCTTTTAAACTCCACATGTTTAGATTTTTAAAGATTGTGCCTTTTAAGGAGACTCGGTGCTTCTCAAACAAAATAAACAAATAAAATAATAAAGCAA-GCAAGCCAGG----AAAC-------------------AAACCC-------AAGTAAACCAAACACCAGTCAAGAACAGTGTCTGCACTTCAGCGAGGCCACCACCAGAGGGTGCCTCTGTCAAGGCCACGC- s mm3.chr5_random 676179 634 + 1172935 CTTGTACAAGTAGAATTCAGTGGAGAAATGAAATTAACCAATTAGCAGTGAACACTGTT------------------CTAGTATAAGGTAGAGAATGTATGTGAAACGTTCAAGTGTTGCTTAAGGGCTACTTCTGAAAGTTAGCTCATGAA---GTAGCATTTATTCAGAGCAGCTATGTATGG-CTTTTCTTGTTGTTCCTTCCTTTCTGTAGTCCATGCTTAAGGT------------------------TTC-------TG--------------------------TCTGGGAGA-GCTATCTAAGCCCCCAGAAAG---GCATGGTTTCTTCAGAAGTCACATTTCAATAA--------ATAATGTTTCTGCATTTTGCTTAAGGCTATTGCTGGTGACCGTAATTTTCTTTTT----------TGCCATTTTTGATATT-TGACTGAAAGCTCCTGTTCATTAATAAGACAGAATGTTTTAAAAAATG-TATTAAACCTCTTAATTTT---------CAACTT---GAACTGTGCTGTGGTGTGGC--------------TTGAACTCCACAGTTGTAGATTTTT-AAGACTGTGGCTGAAAAAATTACCCA-------TTAaac-cagtcaactaacaaaccaatcaatcaacactaaccagc----caactaagca-------------aAAACCTACTGTCAAGCAAATGAAA-ACCAACCAGACAT-ATG-CTGCAATTGAGGATGGGGAACACTAGAGGGCGCCGATGATACAGTCATGC- s rn2.chr14 19460925 686 + 107821284 CTTGTACAAGTAGAATTCATTGGAGAAATGAGATTAACCAATCAGCAGTAAACGCTGTT------------------CCAGTGTAAAGTAGAGGATATATGTAAAATGTTCAAGTGTTGCTTAAGGG-TAACTCTGGAAGTTAGCCCTTGAA---GTAGCATTCGTTCAGAGCAGCTCTGTATGG-CATTTCTTGTTGTCCCTTCC--TCTTTAGTTCATGCTTAAGGT------------------------TTC-------AGACTGTCTGTCATCAGGTGGTCTGGGATCTGAGAGA-GCTACATAAGCTCCCAGAAAT---GCATGTTTTCTTCAAAAGTCACTCTTCAATAA--------ATAATGCCTCTCTATTTTGCTTAAGGCTATTGTTTGTCACTGTGATTTTCTGTTT----------TACCATTTTTTATATTGTTTCTAAACACTCCTGTTCATTAATATGATAGAATGCTTCTAAAAATG-TATTAAAGCTCTTAATTTT---------CAACTT---AAACTGTGCTGTCGTGTGGCTTTTACAGTACCCTTTGAACTCCAGGGTTCTAGACTTTT-AAGGCTATGTCTGAAAAAATTATCCA-------TTAaac-cagtcaaccaacaaaccaaccaatcaacactaaccagtcaaacaactaagcaaAAGTAATTTACTAAAACC--CTGTGGAGCAAAGGAAA-ACCAGCCAAACAT-GTG---GCAATTCAGGAGGAGGAACACTAGAGGGCACCTATGATATAGCCATGTT a score=80500.000000 s hg15.chr4_random 40728 1306 + 1219494 TGCCTTCCAGGATGCCTCCAGGAGCAAAAG-CA-GATTTGGTCAACCTGGCAAAAGAGAAGTTTTTTTTTCGGAGACTAAGAGCACTTAGAgggatctagcactggctctgctgctcaccatgtcaccttgggcaagttactgtaagcatcagttgcctcatctattaga-------aaaaaataatacaactagaccaaatgTGTAGGAGGAATATTTTCATATCTAAAAATTCAGTGATTTTTAATACACTAATAAAATATCCAGGCCAGGAAGAAAAACTGAACTTCTGTTACAAGACCG--ATGTGGCAGGCATGGC------AATAGTGGGAAGCTTC--------ATGAAAAGGTAGTAAGAATGACGGCAGCTTACCTCAAGCCCTGAGAA--------AAAGCAAATGTGCACAGAGCTAAGGTACAGATTATATATTCATGTCCTGGC----AAAAGAGAAAGAAAGGTACAGAAAAGAAATGGGAGCCAGGAACCACCACAAGACATCCCATCTGCTTGGGTTCATCCCAGCCCCCTTCCCTCCACACCATCCCACCCCTCCTGGGCTGGCATTTTTCCACTC------TACATGTCCTACCATGCACATAATGTTTCAGGGAATCAAACTCCTCTAAAATACACAAAGCCTAAAAG-ATAGACATGTT--------TGCATTGGTGGCAACCTGGATATAAATGGACACAAAATCTTAAACACAT---TCCTGCCTCATCAAATATGTATTTGTTTTCACAAAAGCAGCTCAAACCTGCTTTGGGACTCCCTCCCACAAAACTGGCTCCGGATCAGGGAACACTACCAAACCAACAGCAGTCAAATCAGGTAAGAG-TCCTACAATATGGAACATGTACAAACCGGTAAAGAAAATACGGAACATGTACAAACCGGTAAAGAAAACACGTTAAGACTGGTAGGTT----TAAAATCAAAATTTACATGAAGACTGTACAAGACTGAACAAGAGAGAGGCTTTTCGTTTGGGAGTGGGGAAAAGAAC-CGATATAATTTTCTGAAAAATTTGAATAGGAAAAGTAAAGTACTCTAATTCTTTTTCCTTTTATCTGAATAATAATTTGGTTTAGCAGTGAAATCTAGTCAACTTTGAAAAGGAATACCTACGTCTGTTTACAAAGCTTGGTCATCTATGGACTTGAGGTACTGTGGCATTATCATATGCAGTATTTGCCAGCAATAGCAGGGAATCAGAGATGATCTATAAAAAATAACTGCAGATTTCCTCCTGGCTTTGTAAAGTTTCATTGTTGCTGATGTGTTGATGTGTTGCTGTTCAATCTGTTTCTTCAAAGCGTATTTAAATACTTTTGA s mm3.chr5_random 508519 1068 - 1172935 TGCCCTGTGGGATGCATCCAGCAATAAGTATCACTATGAGATCAGACTGGGGGGTAGGGTTTATTGTATTCAGGAACTGGGATCACTGCAGTGGTCCTAGTGCTGACTCTGACACGCACCAGGTGACCTTGCACAGGTC--------------TTCTCTCACCTATAAAACATTT--TAAAAGCCACACAGCTAGACCATCTGGACTGCGAGGTTATTGTCA---TCGTGAGTTCAACAAATTATAATACA--AAGTACTTACTCTGGCCAGGAA-AGATGCTGAATTCCCATTATATGATTGGCATGTCACATGCAAGGCAAAAAAAAAAGTGGGGAGCCTT---------AAAAAATGCAGTAGGACCCGTGG-AGTTTAATTCAAATAATATAAAGGGGAAGCAAAGCAAATGTGCATAGAACTAAGACTCCAAGTGTA-TCCCAAGGCCTGGCAAAGAAAGGAAAGGAACAGCTGCTGTAGACGAATGGGAGCCAGGGACCACTGGAG-----CCTA---------ACTCGCCCTGGCTTACCTTTCTACTCTTCA------CCCTCTTGACTTGGCAATTCCCCAGTCTCTGATTCTGTCTCCTGCTAAGCATAAAATATTTGAAGACTTAAAACTACTGCAAAAGACATGGAGTTTAAATTCATAGTGTTGTTGGGGAG--TGAACTGTTACCTTCC-AGGTGTAAATGGGTA-AAAACCTCAAACACATCCCTCCCACTTTATCAAA----TATTTATATTCACAGAAGCAGCTTAACCCTGCTTCGGGAGTTCCTGCAACAAAACCGACTCCAGGTCAGGTGACCCCACTACCTCAACAGCAACCAAATCAGGTAAGCG-CCCAGCAATG----------AC--------------------------------------AAAGAAAGCATATTGAGACTGGCAATTTAAAAAAAAATCAAGATTTGCAC--AGTCT---CGTGTCTGAA-------GAGGC-TTTCTTGAGGGAGAGAAATAAGAAAGCCAATGTACTTGTTTTTAATATTTAAATGAAGAAAACCAAGCAACCTCATTCTTTTTCCTTGTATGTGAAT-------------------------TAGTTA--TATGAGCAAGAAT--------------------------------TTGGCTT--------------------------------------------------------------------AACTAAATA--------TTCAAAGCTTTGCAAAGT-----------GGATG-------GTGTCACC-----------------------TATTTACAAAACTATAA s rn2.chr14 88371811 1059 - 107821284 TGCCCTCT-GGATGCATCCAACAACAAGCA-CACTCTGAGGTGGGACTGGAGCACA-GCCTTAGTGTATGCAGGAACTGGACTCGCTGCAGTGGTCCTAGT------TCTGACACTCACCAGAGGACCTTGCACAGGTC--------------TTCTCTCACCTACAAAACATTTAAAAAAAAACACACAGATATAACATGGGGATTGAAAGGTCACTTTCA---CCATGAGTTCACCAAATTTTAATACA--ATGGAATTATTCTGGCCAGGAA-AGACACTGAATTCCCATTACATGATTGGCATGTCGCATACAAGCC------AAAAGTGAGAAGCCTTACAAAAAAAAAAAAATGCTACAGGACTCGTGGAAGTTTAATTCAAATAATGTAAA-GAAAAACAGAGCAAATGTGCATGGAACTAAGACTCCAAGTCTA-ACACAAGGCCTGGC----AAAGGAGAGGAACAGTTGCTGTAGGTG--TCGGGGCCAGAGACCACTGGAA-----CC-----------ACTTGTCCTGCCTTACCTCTCTCCTCTTCA------CCCCCTTGACTTGGTAGTTTCCTCGTCTCTGACTCTGTCTCCAGCTAAGCATAAAATATGTGAGGACTT--AACTGCTCCAAAAGACCTGGAGTCTAAATTCACAGTGGTTTTGGGGGGGATGACCTGTTACCTACC-AGATATAAATGGATA-AAAACCTCAAGCACATTCCTCCTGCTTTATAAAA----TACTTATATTTGCAGAGGCAGCTGAGCCCTGCTTTGGGAGCTCCTGCAACAAAACCGACTCCAGGTCAGGTGACACCGCTAACTCAACAGCAACCAAATCAGGTAAGTGCCCCAACAATG----------ACA--------------------AAGATTTACAAACCAGAAAAGAATGCATATTAAGAC-GGCAATTT-TTTAAAAATCAAGATTTGCAC--AGCGT---CAAGTCTGAA-------------------GAGGGGGAGAAGTAAGAAGG-GAATG-----ATCTTTTGTGTTTAAACGAGGAAAGCAAATCGGCTGCATGCTTTCTCCTCCTGTGTGAGT-------------------------CAGTTA--CACGAGCAGGGCT--------------------------------TTGGCTT-----------------------------------------------------------------AACAACTAAATG--------CACAGAGCTTTGAAAAGT-----------GAATG-------GTGCCCAC-----------------------TGTTTACAAAACTGTGA a score=113176.000000 s hg15.chr4_random 42034 1282 + 1219494 AAACTGCATTATCTTTTGGCTACTGCCCTCCCTCCCACTTCAACTCTTCCTCTGCTGTGAAGGGCCATGGCTTACCTACTTCTACATTTTGTGAAGTAATATAATCAGATAACACTAGAGTCTAAAGTCTTCTCCTCAGTCA---------ACAGAACACTCAAGTCAAGACCCATTCTCCCCGCTTAAggaatctgaatcttatacaatttgggaaccttctttaagaaaaagaatacaaaat-tcgatatgtaaaattaagtactgaaataaatat-ttataatgtgataagaaataaca----gtaaatcacaaattttcttaagctgataagtaccgtaagcTTGAGacattgctagggcacctcccagggccacaaagggagca----------atgc--------------tagtgagaggccccgaggcttcatctttatttaccttcatggtaa-acccacctctgACAGGACTGTCAATTA------CATGAGGATATCCACCACTGACAGAGTAAGGGAAGCAGACAACCTCTTGTCTCATACATCACTTTCAATCCCCTGCAGGTCTTTCCTTCTTTAAGTCTGATACCATTAACACAGATGCTCACACTGGGGCCAGATCTGCATCTGGTAAGTGATTGTTTATATTATTTTAATACCCATTGTGAAATAAATATAATGCCTAATATTACAGTGGGGGGAGCAT-----GTATATGGGTGCGTATATCCACAAATGAAAACACACATATACTTATTCAC-ATAGATAAGTTGAAAGAGAGG--AGAGAAGAGTCCAAGAGAGTTGGACATCATTAAACGTTT-----------TTCTTAGCAAGAGAGTCTCTAAACAAATTAATCTAATTCTTTCCTTCTCCAGTTTCTCTAACCTCTTCTCC----TCCTCTCTCCATTCCTCCACCATACCTTCTTTAATG-CCCCTACAGCATCCACACATCCACATAAACACTATCACTGCTATTATCACCCACAATGACAGGAGCAAACTGGAAGAGACAAAGA-TCTTCAGTGTCTTCTTATAGAATATCTGTATAGATCTTCAGCCCTCTCATAGAATATCTGTGTAATCTGTTTGA-GAAGAACAATAAGTTTCTTTCCTGAGTTAAAGTGGATTTTTTTAGTGGTCAAATTTAAATA------TAGCTCATGTTCCAGACAA--------AATATGTAGTCTGAACCTCATAATTTTCAC--GCATAACCTA--GAGGAGTTAATTTCTTAATTGTAAAAAAGCTATCAGAAAATTTTCAGGAAGAATTGCTCTTGTAGCCAAAAGGGGAAAG----------------CAAAGATA--AAAATAAATCACTTAA--------------------------------------------------------GTAATTCTCAAAC s mm3.chr5_random 509587 1237 - 1172935 ----------------AGGGCACTGCC----------------------------------------TGCCTTGTCTTTGTCTAGACTCT-----GAAATATTAGTCAATGGTATTAAAAGTTCAAGCTGTCTCTGTAATTATTGGGCATCATAGATCATTCAAGTCAAATCA---TTTAAGTCCTCAAGCAATCTGTGGCTTACACTA-TTACAGACATTCCTTAGGGGAAAGAATCTACAAA-TGGATGTGCACAGTTAAGCACTAAAACAAAAATATTATAAC----TAAAT-----------ATAAATCAC-------------CTGATAAGACCCACAAACTTGGCATACTGCTAAG---CCACCCAGAACAACACAGGAAACAAGGAGGCCTCATGCAGACAATTCGAGGGTAGTGACAGAGCTTGAACCTTCG----CATTGACTT-GATGGGAATACATGCCTTTGGAAGCATAAAT-ATTATAAATTTCTGAGA----CTACAATTGGCACTGCCAAAGAGACAGATAATGGCTTCTCTAACAC-CCAGTTTCAATGCCCTGCAGGTTTTTCCTTCCATAAGTCTCATACCATTAACACAGCTGCTCACTCTGGGGTCAGACCTGCCGTTGGTAAGTACTCTTTTATACTACCTCACTCCCTTTTGTTTAATAAATCAGGCACCTGATGCTGAACATGGAGGAGAGTCAAGAACATAGAGAAATGTCTATCCAC-----AGAGCACATGCACACCTATTCACTGAACGTGAGCTGCAATAGGAGCAAGGAGAAAGTC--AGAGAGTCAGATAGCACTCAATAATTCTTTGAAAGTTTTCCTAATAAA-----CCTTTATATAATTGACCTCATTCTCGCCTT---TAAGCCTGATAACCTCTTCTCTAAAATCCTGCCCC-ATTTCTGCATCAGATCTTCCTTAATGTTCCCTACTATATCCACA-AGCCACATAAACACTGTAACCACTATTCCTACCCTCTAGGAT-------GACAAGAATGGGCAAGAGTTTCTC----TCTGCTCATAGAACATCTGTAAAGATCCT---------------------------TCTGTTTGAGGAAGAAAAAT--GTTTCCCTCCTGAT----------TCTAACCAGTGTGCAGATTTAAAAATACTATTAATGCATGTATTAGACTA---GCATTAATGCATGGACTATATCTTGCAACTTTGTCTGGAAATACCTATGAAATATTTCATTTCCTAATAGAAAAAAA---ATCAGAAAATGTCCAAGAACC---ATTATTGTAGCCAGAAAGGGGTAAATGACCTAAATGATCTCAGAGATGCCAAAGGAAAACATTTAATTCCTGGGGTATGGGGAAAAAGATGAC-------------------------ACTTGAAGCCCATAAAC s rn2.chr14 88373370 1261 - 107821284 ----------------GGGACACTGCT----------------------------------------GGCCTTGCCTTTGTCTAGATGCT-----GAAATATCAGTCAATGGTATTAGAAGTTCAAGCTGCCTCTTCAGTTATTAGACACTGTAGATCATTCAAATCAAATCA---TCTACGTCCTTAAAGAATCTGTAACTTATACTA-TTACAAATATTCTTTAGGGAAAAGAATTTAAAAATTGGATGTGCACAATGAAGTACTAAAACAAAAATATTGTAAC----TAAATAATTACCATAAATAAATCAC-------------CCGATAAAACCCACAAACTTGGCATTCTGCTAGG---CCATCCAGAACAACACAGAAAAGGAGGAGGCCTCATGCAGACAATTTGAGGGTAGTGAGAGAGCTTGAACCTTTGCCTTCATTGATTTCGATGGGAATACATACCTTTGGAAGCAGTATT-ATTA------CCTGAGA----CTACCACTGATGTTGCCATAGAAACAGATAA-----TCTCTAACAC-CCAGTTTCAATGCCCTGCAGGTTTTTCCTTCCATAAGTCTAATACCATTAACACAGCTGCTCACTCTGGGGTCAGACCTGCCATTGGTAAGTACTCTTTTATATCACCTCACTCCC--TTATTTAATAAATAGGGCACGTGACACTGAGCACGGAGAAGAGTCAAGAACATAGAGAAATGTCTATCCAC-----AGTGCACATGCACACCTATTCCCTGGACATGGGCAGGAATAGGAGCAAGAGGAAAGTCAAAGAAAGTCAGAT-GCACCCTATAATTCCTTGAAAG--CTCCTAATAAA----TCCCTTAT-TGATTGACCTCATTCTCACCTT---GAATCCTGAC-ACCTCTTCTCTAAGATCCTGCCCCAATTTCTGCACCAGACCTTCCTTGATGTTCCCTACTAAATCTGCA-AGCCACATAAACACTATGATCACTATTGCCA-CCTCTAGGAT-------GACCTGAAAGGACAAGAG-TTCTC----TCCGCTCATAGAGCATCTGTAAAGATCCT---------------------------TCTGCATGGGGAAGAAAAAT--GTTTCCCTCCTGAT----------TCTGCTCAGTGTTCAAGTTTAAATATTCTATTAATCCATGCTCTGGGCTAGGTGTTTTACT-------CTATATCTTGCAAATTTGCCTGGAAATACCTATGAAAAAATTCATTTCCCAAT-GGAAAAAA---TTCAGAAAATTTCCAAGAACCATTATTATTGTAGCCAGAAAGGGGTAAATTACCTAAATGATCTCAGAGATGCCAAAGAAAAATATTTCACTCCTGGAGGAGggggaaagatgggacttggaacaaaagccttaaagccagagtttgaagcccagaaac a score=1956.000000 s hg15.chr4_random 43320 31 + 1219494 TAGGTTAAATGCCAAAGAAAAACTTAACAGG s mm3.chr5_random 510947 31 - 1172935 ATAATTCAATGGCTAACAACACTTGGATAGG s rn2.chr14 88374761 31 - 107821284 ATGACTGGGTGGTTGACAACACTTGGAGAGG a score=8570.000000 s hg15.chr4_random 43351 88 + 1219494 GGAAAA------------GTTAGCAATAGCCCTTGTAGTCGTACAAGCAGACTAAATAAGTCTTTAAATTTCATCTTTGTGTCTAAGTA--TACATGCAATA s mm3.chr5_random 511258 90 - 1172935 GGAAAAATGAATATAGAGGTTAGAAATGGACCTTGTGCT------AAAAACTTAAATGAATATGTTAATTTCATGTCTG----TAATTA--TACACATAATA s rn2.chr14 88375043 92 - 107821284 GGAAAAGTCAATGTAGAGGTTAGAAATGGACCTTGTGGT------AAAATATTAAATGACTATCTTAATATCTTCTCTA----TAATTAATTACACACACTA a score=45485.000000 s hg15.chr4_random 43439 362 + 1219494 GAACACTATGTATTTACATAGCAACTCCTTCCTTTAAATATA-TTTTACGTTTAGTAAAAACATTTTAGTTTCCTAAATGTCCAAACTGAAAAAAAATACAATGAAAGTCTTCTTCCTTGCCCTACAGTTAAATCCTGCTGCAGGAATGACACCTGGTACCCAGACCCACCCATTGACCCTGGGAGGGTTGAATGTACAACAGCAACTGCACCCACATGTAAGTTGAACAGCTGGACCTTAGTTTTAACATTAGAGAGCATTTTCTCTCAGGTGAAAGCCTACAG----TAGAAATTTTTTAAAGCTTCTTGAAAATTTTGCCCAGATTATTAACTGACGAATGTTCTGCTGAACATAGACCAGTAT s mm3.chr5_random 511348 350 - 1172935 AAATATTATGAACTTACGTAGAAAATTCTTCCTTTGAATGCATTTTTACCTTTAATAAGTATGCTTTAGGGTCCTAGATACTCAAACTG-AAAGAAACATAATGGAAATCTTCTCTGATGCCCCACAGTTCAACCCTGCTGCTGG---GCCCCACGGCGCACATACTCTCCCGTTCACCCTGGGACCACTGAATGGACAGCAACAGCTGCAACCGCAGGTAAACTGA--GGCAAGGCT----TCCTGCACTCTGAGAGCATCTTCTCTCAGATGAAGCCACAGGGAGAAAGGAACCCATTTCAAAGTCATTGAATG-------CAGATGATTTGTGTGTGTTTGTTCTACTTATCACAAAACGGCAT s rn2.chr14 88375336 347 - 107821284 AAATATTATGA-TTTATGGAGGAAATTCTTCCTTTGGATGCATTTTTATCTTTAA-AAATATGCTTTAGGGCCCTAGATGCTCAAACTG-AAAGAAACATAATGAAAATCTTCTTTGATGCCCCACAGTTCAACCCTGCCACCAT---GCCACATGGCACACAGACACTCCCTTTCACCCTGGGACCACTGAATGGACAACAGCAGCTGCAACCCCAGGTAAACTGA--GGCAAGGCT----TCCTGAACTCTGAGGGCATCTTCTCTCAGCTGAAGCCACATGGATGAAGGAACCCATTTCAAAGTCCTTGAATG-------CAGATGATTTGTAGGTGTTTGTTCTACTAAACAC-AAATGGCTT a score=27045.000000 s hg15.chr4_random 44988 364 + 1219494 tgaatagttttcatgttttaaaatattcactcacaatgttgtttttaatgactgcttagtag-------tccatg---gtatactaaatta--------c----ttattatgaaaatttgggggtttttccaaagtctttgcttctataaacaatgctacagtgagcatccttgtgactaagtcta-tgatattccaatgactatttcctttggaccaactcttaggaacacaatttctggagccaaagACACACAAAGTATCTTG----ATAATAAAATTTTTGATAATAAAAGTGAACCTCTGTAAAAGAT----TTAAGATGCAAATAAAAAGAGACTCTCCATAACAGGTGATCATACTATAATCTACATACTGATTGCCCAGCTTCAGTC s mm3.chr5_random 511697 372 - 1172935 TGAAATGTTTCCACGCCTTAAAACCGTCACTTACAATGTGATTTTTAGTTAGTGCAGAGCGCACTACACACCATGTGCATACACTTGACTGGAGAAAATCAGGGTTGGTTTGGGTTTTGGGGTTTTTTTTCTAAATTTTTCCCTCTA-AACTCATGTTATAGTGA-CATCCTTATAACTAAATCTATTGCTATA-TGAGAATTGTTTCATTTGAACACATTCTTGGG------CTTTTATAAGACACaaat----------ttttt----ataataagaatattaagaataaattttGCCCTCTGAAAGAGACCAGAGAAAGAGGCAAATGAAATGTGAGCCTCTGTAATCTGTGACACTGGTGTAATTCACGTACAGATTGGCCAGTTTCAGTC s rn2.chr14 88375682 341 - 107821284 TAAAACGTTTCCCTGCCTTAAAATAGTCACTTCCAATGTTACTTTTAGTTACTGCGGAGTTTGCT----GCCATGCACATACTCTTGGTTGGGGAAAA-CTGGGTTGG----------------TTTTTTCAATTTTTTGCCATGTA-ACCTCATGTTACAACGA-CATCTGTATAACTAAATCTACTGTTAAATTGAGGATAGTTCCTTCTGAACTCGTTCTT-GG------CTTTTGCGAAACAAAGAC----------TTTTTTTAAAAAATAAGAATCCTAAGAATAAATTTTACCCTCT-------------AAAAGAGGTGAAT-AAACATGAGCCGCTTTAATCCGTGATGCTGGTATAATTCACATGCGGATTGCCCAGCTTCAGTC a score=22289.000000 s hg15.chr4_random 46127 389 + 1219494 TCAAAAATATACCAACCACTTTCCCATTGCCACGTGAAGGCTAGTTGGGTTTTTTGTTCTTGTT-TTGTTGTCCTTTTTTGTCAGTAGAGAAGGACCTGATTGTGAGTAAGGCTTTTTAATAAATGTACGTAATTTTTCCTTGTTGGCATTCCATAGTTCCATAATTCCTGCACCAACTGTCTTGGGAAACAATA--GTTAACAGTCTAT-----TTCATAAGACTTTCAAATCTTCTGGTTTGGTAATTATGAAATTAAGAGTCCCATTTTGATTA---CTTTCCTGACACTTTGAATTTTCTATAGAAATAAGAATAAATTTTTAAAACCTTAGCTTTCTTTGACAAACTTCTGGCCGGTTCTCAAAGTAGCAGAGTATGGGAGAATGCCAACACCTC s mm3.chr5_random 512107 338 - 1172935 TTCAAATCGTACCTCTCCCTTCCCCACT-CACCCTGAGGGTTTGTTGTTCCCACTGCTTTAGCTGCTGTCATATTTTGCTGTCGGTCAACAAGAAGCTGGCC--------AGCTT-TATAGGGAAACATGT-GCTTGTCATTGTTGGCCTGACAGA-------CACTGCGGTGCCAACCAAATGGGAAAATAGCAAGGTCAAGAG----------CCGGTCAAAC--TCAAAGCTGTCAGGGTGCTGTATACCAAGTTAAATG-TCAATTTTGATGATTTTTTTTCTGACACTATGGATTTTCTATATAAACAAAAATAAAATTTTAT-------------------------------GTTATTCAAAGTAAGAGAATACCACAGCATGACAACTCCTC s rn2.chr14 88377647 330 - 107821284 TCCAAATTGCACCTA-CCCTTCCCCACC-CACCCTAAGAGTTTGTCGTTCCTGCTGCTTTAGCTGCTGTCATATTTTGCTGTCGGT---CAAGAAACTGGCC--------GGCTTCTACAGGAAGATGTCT-GCTTGTCACTGTTGGCCTGACAGG-------CACTGCTGTG-CAGCTGTGTGGG--AATAGTGAGGTGGAGAGCCCGTCAGACCCCGTCAGAC--TCACATCTGTCGGGGTGGCACCTATTGACCTAAAAG-CCAACTTGGATGG---TTTTTCTGACACTATGGATTTTCTATATAAGCAAAAGTAAAATGTTAA-------------------------------TTTTTTCGGAGTAGTAGAAAAC---------ACAACTCCTC a score=26219.000000 s hg15.chr4_random 47386 188 + 1219494 TTTT-GAAAGAGTTTTT----CTCTCATTTTTTCAGGTGTTACCAATTTTTGTCACACAACTTGGAGCCCAGGTAAAAATTATGCTTAATATTGTCTTGATTTTAAATCACCTTGCTGTGAAAGGTGATTTTCTTTCCTCAATTCACTAGATAGTTGTGAGGTTTCCAATGTACTTTGTACTGTATGGACACT s mm3.chr5_random 512764 187 - 1172935 TTTT-AACAGTGCTTTTTGTCCCTTTATTTTTTCAGATGTTACCCATTATTGTGGCACAACTTGGAGCTCAGGTAAGACTATTGTTAAACA---GCCTGATTGTTAATCACCCAGGTGTAGAATGTG--TCTCTTATCTCAATTCACCAATCAGGCACCAGGATTGTAACTCACTTTGCACTGTGTAAGCACT s rn2.chr14 88378093 187 - 107821284 TTTTTAACAGTGATTTTTGTTCATTTATTTTT-CAGATGTTGCCCATTATTGTGGCACAACTTGGAGCTCAGGTAAGACTATTGTTAAACA---GACTGATTGTTAATCACCCATGTGCAGAACATC--TCTCTTGTCTCAATTCACCAATCGGGCACCAGGATTCTGACTCACTTTGCACTGTGTACACACT a score=169563.000000 s hg15.chr4_random 47623 2024 + 1219494 CACTTAATG--------------ATAGA-AAAATATATACTTTTTGGATGGAGATTAA-CTCATTACTCAAAAAATGAATGTCAGCAGTCTCACATCATATGCTGACTTGAGTTTTGTAATATAGATCATAAGGCAGTTTAACATATTATTGGAAAGGCAAA--------ATCTGTATAATCTTTGAAAGTATTTTAAGTTTTAAGTGATATTATACATATATTACTACAAATACATTAAAATGTGTCTAACAAATTGTGTTTGTCATTTTGCTTTTAGGGCACTATCCTAAGCTCAGAGGAATTGGTAAAAAAAATAAAAATACTAT--TTCAAATTATTTTCACTTCTATCACAATGTTTTCTGTCCTCATATAGTCTCTTTTGACCATAAATCCTAAATATG-GTATGT--ACTACAATGAACTGAACATTTTTATAGTTCCTTACATTAGATTATCCTTTCTTTGTTTGGGGATTTCATTATACTTCTCCAGCTACTTTTCTATTAATTTGACTTAGCTTTTG-TTTCCGTTTATTGCTATCAGATTCAGTTCTATCCAGA-AAGGCAGTGCACATTTTTTAACTTCAT----AAGGATTTCAGTCT-------AGGATTATAAACTATTGAAATGTATGCAAATGTAGAATAACATAAATATTGACTTTTTACAGGAAAGATTAAATTCCTTGACTTGGATATTTAATTTTTATGGAAAAATATATCTTTTTCCAGCGTCAGATAGTGATAAATGAACTCTTTCCTACACACATAAATAATTGGAGGGCTGTACCTAAATATAGTTCATATCACCATTGCTAAACACTTCTATGCATTCCTCCATAGGTCCTTTTCTAGAGAAAAGGACTTGAATTAACATGATATCTAAACATGACAACAGTAC---AGAATTGAGGCAATATTTGGGAACACAGTTATTCAACAGCTTTTCTATTATGGAAAATGTAGATATTTT-----CTATATTGTCCATAAATAATCATCAAGGAATGGGGCTAGTGTCTGTTTTGCCAACATTGATGCATGAACATCCATATccagctactgaag--gttcttctatataaccagcactttagcagatcctttacatatgttgctttcaaccttccccaaagcacaaagcagatatttttgacccagctttacagataaagaaactgaggttaa--aagtttaagtaatttaggcctcaaaggcaacaatgagaagaaaagagtggatcc-agatccaATGCCATTTTTTAACCTACTACA-----CTAGTGGTTTTTCAAACATTTTTAACACAACTCACAATAGCAACTACATTTTTCATGCAGCTTAGcacacacacacacacacacacacacaTTCACGAAACAGCATTCACCTTTACTATATAGAATGCACTACTAGTCTACTGCCTGTTTTATTGTTTAATGATGACTGACACTCACCTTTTTTACTTCAAAACTGTGGATATCACAACCCTCAGTTTGAAAACGTCTGTACTCTGCTCCTATCT-GTCATCCAGCGTAAGTCTAATTCTGGTTTCAATATCTCTTAAATGTAACAcagtgtttcccaaacttcattccttgccc----agcaaatcaggatggcatcaaaagctggttaaaaaggcagattg---------------------------------------------ctaggtcctgctccagacctgctcgatcagaatctctCTAAAAATGAAAAACTCCAATAGACAGGAATT---CTTTATGTATCTTCAAGGAACATACA-ATAGCTGAATTGCCAGGA----TAAATGTTTCTAACTA---AGTATTCCAATGCCTTTGAAAAATACATCAAAAAAA-CTTGAAGGGATGAAAGCCATCAG----------GATTAATCTACTTGAATCAATTTTTCCATTAATTTTTATGCTCTTATTTTTTGAAAAAATGTTATGAGCAAAAGAAAGATTACA---------------------------TGTTAGG--TTT-------------------------------------AATAA-------------------TATG--------------TAATTTATTTCTGAGGGAAATGGAGCATAGCAAAGAGTCCCAGTATTGAATCAGACTAGGCTGGACCAAGGGTGTATTTCCCCTGAGGAATGCCAGGTCTTTGCTGT--CTTCTCTGACTTTACTCT------CTCCATCTTTCC- s mm3.chrUn_random 178371 2043 - 117911829 CACttaattttat----------atatataatatGTCTAATTTTCAAATAAAGGTAAGTCACATTATTC-AATAATAAACATGAGCAATCCTATATCACATGCTGACACAAATTTTGTGATATACAT-ACCAGACCATTTAATATATTGTTGAAAATAAAAAGAAAATCTTTCTTTAGAATACTTAAAAGTATTTACATATTTTAGT--TATTTTAAATACATTGCATTGAATATATTAAAATTTATCTAATTGCTTCTTGTTATTGTTTTGCTTTTAGGGTGCTCTCCTAAGCTCAGAGGAACTGGTAAAATCCTTTAAGTCACTACTGTTTAAGTTCTTCTCTCTCT--TCCCAGTGTCGTCTGCCCTTCCA---GCTCTTTTGACCACAACCCC---ATCTAACTATGTTCCCTACAATGAGCTGTGTATTTTCAGAGCTCCTCAAGTCTGACTACTCCTTC-TCACCTAACAA-TTTGTCATCTGTCTCCTACTACTTTT-CATTAAGTTAACTTTGTGATAACTTTCTATATGTTGCTGTCACACTCTGTGTTAACCTGAAAATCCATTGAACACTTTTAAACTTTATTTTGAGTGACTTGAACTTTTTACTGAACATTACATACAATT-CTCCAGATGTTGAAGCAGAGTACTGTAAATATTGACT--CTGCAGGAAGGGTTAACACTGTTGTCCTTTCCATTGTAT-------------GAGATTCTTTCCTATATTTTAGTAGGGTTGAGTGAGTTCTTTTCTATAAACACTAATAATTGAAGGATAGAAATTAA----AGTTCTTATTCCCATCACTCATACTTTCTATGCAGTAATGAACAGG-CCATGTTTAGAAACATCTGTTTGGATTACTCTTCTATCTAAACATAACAACGGAAG----GAATTGAGGCAGGTTCACAGAACACAGTTTTTAAAGGCTTTTCATACTATGAAAAGGGCATGTATTATATTTGCTATACTACCC-TTAATAATACTCCAGTCGT-GGATGAGCATCTCCCTTGCCAGCACTGACAGATGAACATTCCTATCTTCCTGTTGTTGGAGTATTGTCACATAACAAGCTCTTTATCAGATCTCTCA---------CCTTTAGGTCTCACTA---TACAAAATACAGACCCATGATGGAGCTGTACAGAT----AAACTGAGGCTCAGCAAGCCTAAATGAGCT--GTCTCAAAGGCAACC--------AAAAATGTAGATCC-AGATCCACAGCCATGGGTT------CTATAGTTCTATAGTAGTTCTCAAACGTTTTTTAGTTCAATCCATGGTCATAA-TGAACTTTTCATACAGCCCA------------CCATACTCACCTGATTTTACAAAATAATGCTTA---TTCTTATATGGCATGTGTTG--GGATAACTTCCAGCCTTCT-------------CTGACAGCCATAATTTC-------------TGTATGCCTTGATTCTCAGCTTGCAGTGTTCTGTGCTGTAGTCTGCCCTCCTTATCTAGCAGAGATCTAGGTCTGCCTTCAGGATT---GACGTCTAAGATAAGGCTTCCCTAGCTAGGGGCTCCATTCTCAGACCACCTCAGGATGACTCAGAGAATTAGCT-TAAATTCATATTA---------------------------------------------GCAGGCCTGGC-CCAGAC---CTCAAGCAGAG----CCTAACCATGAAAACCTCTGAGAAAGAGATGCT---TCTTCAGTAATCTCAGAAAATGCACAGGCAGCTCAAGTACCAAGAGAACTAACTCCTCCTGACCC---AATAGAGGGATGCCTTTGAAAAGGAGGCCGAAGGGACCTTAAAGGAACTCAAGCCACAAAGGCAATGTCTGTTTGACCAACTTGTATTAA-TTTTCCATTAACTTGTAGTCTTTTTTTTTTTAA---TTTTTTGTGGGCAAAAGAAAGGCTTTCTTTTAGGTGAAGGACAGAGACAGAGCTTGTCAATACTTTGTGGATTTTCTACATAGCACTGTATCCAGACATGCCTGATACCTTCAGACTATGCTTTTGTTATGACTGTCTTGTGTTCTAATTCCCTTTTTAAGGAAAAGGAGCCCGGTAACAGATGTCAACACTGACAAGGGC--------ATGTTAGATG--------------AATGCCAGGTCTT---TGTGATTTCTCTGACTTTAGCCCTCCCTTCCTCCCCCGCCAC s rn2.chr14 88379343 1996 - 107821284 GACttaattttatttatttatttatatacataatgtataattttcaaataaaGGTAAGTCACCTTATGC-AATAACAAACATGAGTAGTCCTATATCACATGCTGACACAAATTCTGTGATATACAT-ACCAGACCATTTAATATATTGTTGAAAGTAAAAA-----TCTTTCTTTAGAGTACTTGAAAGTCTTTGAAGTTTTTAGT--TATTTTACATGCATTCCACTGAATCCACTGAAGTTTCTCTAATTGATTCTGTTTATTGTCTTGCTTTTAGGGCGCTCTCCTAAGCTCAGAGGAACTGGTAAAGTCTTTTAAGTCACTACTGTCTAAGTCCTTCTCCCTTC--TCCCAGCGTCGTCTGTCCTTCCA---GTTCTTTTGACCACAACCCC---ATTTC-CTACGTTCCCTACATTGAGCTGTGCATTTTCAGAGCTCCTCGAGTCTGATTACTCCTTC-TCACCTAAAAACTTTGTCATCTTTCTCCTATGACTTT--CATTAATTTAACCTTCCTTTGACTTTCTAGATATTGCTGTCAGACTCTGTT----------AAGCCACTGCACAAATTTAAACTTTATTCTGATTGACTTAAACATTTTACTGAAGATTACATACTATT-CTCTAGATGTCAAAGCATAGGAATATGAATATTGACT----GCAGGAAGAATTAAGGGCGTTGTACTTTCCATTTGAT-------------GAGATTCTGTCCTACGTTTTGGTAGGGGTGAATGAATTCTTTTCTATAAGCAGTAACAAGTGCAGGATGGAAAGTAA----AGTT----------------------------------------------------------------TGAATTACTGTGCTATCTAAAC-TAACAAGAGAAGTGGGGAACTGAGGCAGGTTCACAGAGCACAGTTTGTCAGTGCTTTTCATATTATG-----------TATTCTACTGGCTACGATACCC-TCAGTAATACTCCAGTCAT-GGATCAGCATCTCCTCAGCCAACACTGACAGGTGAACGTTCCTATCTTCCTGTTGAAGGGGCATTTTCACAGAACAAGCTCTTTAACAGATCTCTCA---------CCTTCAGGCCTCACTA---TACAAAGTACAGACCCATGATGGAGCCAtacagat----aaactgaggctcggcaggcttaaatgacgt--gtctcaaaggcacCT--------GAAAAGGTGGATCCCAGATCCACAGTCACGTGTT------CTGAAA----GTAGTAGTTTTCAAACATTTTTTAGTTCAATCCACAGTAATAA-TGAAATTTTCATACAGCCCA------------ACATACACACCTGATTTCACAAAACAGTACTTA---TTCTTATGTAGAATGTGTTG--GGATAACATCCAGTCTCCT-------------CTGCTAGTCCTAATTTT-------------TGTATGCCGTGACCCTCAGCTTGAAGTGCTCTGTGCCGTAGTCTGCTCTCCTCATGAAGCAGAGATCTAGCTCTGCCTTCAGGATC---TAAGTCTAAGACAATGCTTCCCCATCCGGGGTCTCCACCCACAGAGCACCTCAGGATGGCTTTGAGAACTAGCT-TAAATTCATATTACCAGCACCTCGGGATGGCTTTGAGAACTAGTTTAAACTTGTATTTCCAGGCCCAGC-CCAGAC---AGCAAGCAGAG----CCTAACCATACAAACCTCTGAAAAAGAGGTGTTTTGTTTCCAGTAATCTCAGAAAATGCACAGGCAGCTCAAGTACCAAGAGAACGAACTGCTCCTGAACCAAAAACACAGTGATGCCTTTAAAAAGGATGCCGAAGGGACCTTGAAAGGACTTAAGACACACAAGCAACGTCTGGTTGATAAACTTGCATTAATTTTTCCAATAACTTTTACTCTTCCTTTTTTGAA----CTTTTGTGGGCAAAAGAAAGGTTGTC---------AAGGACAGAGAGCGAGCTTGTGGAT--TTTGTGGATTTTCTCCATAGCACTATCTCCA---------GATAATTTCAGACTACCCTTGTGTTATGACTGCCTTGTATTCTGATTCCTTTTTTAA-GAAAAGGAACCCAGGAACAAATCCCAACACTGACACCAGC--------ATCAGAGTTGG-----CCCTG-GCAAGGGCAAGTTTCTGGTGTGATTTCTCTTACTTTAGCCC------CTCCCCCTGCCAC a score=380.000000 s hg15.chr4_random 49647 17 + 1219494 --------ATTCCTACCCAAACTTG s mm3.chrUn_random 180414 24 - 117911829 GGCCCACCACTCCTAGCCAA-CCTG a score=79537.000000 s hg15.chr4_random 49664 522 + 1219494 CTCCCCTTAAAAGAGAAAAGA----------------AAATGTGTTGCTTTTAACTTTGTTTTCTGTTTGCTTCCCTCATTCCAGCCA---------CAAATCTTCACGAGCCTCATCATCCATTCCTTGTTCCCGGGAGGCATCCTGCCCACCAGTCAGGCAGGGGCTAATCCAGATGTCCAGGATGGAAGCCTTCCAGCAGGAGGAGCAGGTGTAAATCCTGCCACCCAGGGAACCCCAGCAGGCCGCCTCCCAACTCCCAGTGGCACA---GATGACGACTTTGCAGTGACCACCCCTGCAGGCATCCAAAGGAGCACACATGCCATCGAGGAAGCCACCACAGAATCAGCAAATGGTAAATTCTCCTAGCTTGGAACATGCTTCTTGGCTATAAAAGTCATCTGCAGAATGGAAAAGAGGAGTTCTTTGTCTTGCCTTGACAAATGCAGATCTTAGTAAGATTAGGAAGCCCCTTTACTCACTCACAGTTAACTCCAGCAACATGAGGGAATATTTTTACTCAGCCACCAACCCCCAGGTATTAAC s mm3.chrUn_random 180438 538 - 117911829 CTGTCCTCCAAAGAAAAGAGATGGGTTAACCTTGTTGAAGTGCGTTCTTTTTCACTTTGTTTTCTGTTTCCTTCC--CATTCTAGCCGTTAGCCTCCCAAATCTTCACAGGCCTCCTTATCCACCCCTTGTTCCCTGGAGCCATTCCTCCCTCTGGTCAGGCAGGCACTAAACCAGATGTGCAGAATGGAGTCCTTCCTACAAGACAGGCAGGAGCGAAAGCTGTCAACCAGGGAACCACTCCGGGCCATGTCACAACTCCTGGTGTCACAGATGATGATGACTATGAGATGAGCACCCCTGCAGGCCTGCGAAGGGCCACACACACCACGGAGGGAACCACCATAGATCCACCAAATAGTAAGTTGTCCTAGGGTAGAACATGTATGTCACC-ATGAAGGTC----ATTGAAGAATAGCAAAGAGTTCTTTGTCTTGTGCTGACAAATGCAGACTTCAATGAAAGCAAGGAACC---TTCTTTATTCACAGGCA--TCAAGGCACATAAAAGAATGGTTTTACTAATCTACCAATTCCATGGTATTAAC s rn2.chr14 88382103 525 - 107821284 ctGTCCTCCAAAGAGAAGAGATTGGTTAACCTTGTTAAAGTGAGTTATTTTTC-CTTTGTTTTCTGTTTCCTTCC--CATTCTAGCCACTAGCCTCCCAAATCTTCACGGGCCTCCTTATCCACCCCTTGTTCCCTGGAGCCATTCAGCCATCCGGTCAGACAGGGGCTAAACCAGATGTGCAGAATGGAGCCCTTCCTACAAGACAGGCAGGAGCGAGCCCTGCCAACCAGGCAACCACTCCTGGCCA---CACAACTCCTGCTGTCACAGATGATGATGACTACGAAATGAGCACCCCTGCAGGCCTGCAAAGGGCCACACACACCACTGAGGGGACCACCATGGACCCACCAAATAGTAAGTTGTGCTAGAGTGGATCATGTTTGTCTC---TGAAGGTG----GCAGAG-------AAGGAGGTCTTTACCTTGTGCTGACAAATGCAGACTTCGGTGAAGGCAAGTAGCT---TTCTTTATTCACAGGCA--TCAAGACATATAAAGGAATGGTTTTACTGGGCTACCAATCTCATGGTATTAAC a score=107450.000000 s hg15.chr4_random 50650 1525 + 1219494 TGAAAGATTTTTAATTGTTGGCATAACACATGTTCCATTTTGGGTCAGAACTGAAAATACTTGAAAGCAGAATGTGTTCCTTGCCCCAATACACACACACGCACATAGAAGCCTATA-GGAGACACACTTCAGTTCATCATGACCCTGTCTCCACTCACT--GATGGAGCCTCAGAACCTTCCTACTGTAATACTGCAAGCAGCCACTAGTGATTACCTACTGTAATAGCAGGCACTAGTAATAG-------CTAGCAGAGCAGATAAA---CCCATCTGCCGTTCTTAGATGGAACCTAAGAAATGTGACAAAAATAAGCTTTTCTTGCACCCACAAGCAAAGTTAATTGCTTAACATGTGAAAATGTCTAGAACCAAATATCCTTAGAGATAACTAAAGAATGATATGGATGCTCCTAATCCTGCAAAAGAAACTTGGATCTCAAGTAAAAGATATTTATGTTAAATATACTTTTTACCTACATTTAAAAGGTGTTTTATTTTCTTCCAGGAATTCAGTAAGCTGTTTCAAATTTTTTCAACTAAGCTGCCTCGAATTTGGT-GATACATGTGAATCTTTATCATTGATTATATTATGGAATAGATTGAGACACATTGGATAGTCTTAGAAGAAATTAATTC-TTAATT-TACCTGAAA-ATATTCTTGAAATTTCAGAAAATATGTTCTATGTAGAGAATCCCAACTTTTAAAAACAATAATTCAATGGATAAATCTGTCTTTGAAATATAACATTATGC-----------TGCCTGGATGATATGCATATTAAAACATATTTGGAAAACTGACTCTTTTTCTTCTTTGGAGATGGAAGAAAGTTGGCCCTTA-CAGAAACTACATTTCCTCAGGGCACTAACATGATACTCCAGGTCTAGAACTTTCTTTGGAAGTAGGAAGCACAGCAGTC-AAGAAAGGGACATCCAGCAATGTGAAGACAAATTCTGGTCTCTTCACAGTTACCTCATCATTTGCTTTCTTATAAGAGTCACAAACTTAATTTTTAATAAGCAGAGTACTTTTGAACATCTAAAACATACAGTACAAAGAA----TTACAAATCATAATTCTGCCTATCCTCAAGTGTTTATATTCAGAACTCATGATAATGGCATTTAATGTTTAATTTTGGTATGCTTGAGTGTGAAAAATGGCATTGAAAAAAGTAATCATAATCACTAAAACAAACCAAGGTGATACTCTTGCTCCATTCACCTAAAAGGTAGAAACTAATCTGATTTAAACTTATAA--CAGACC-----------ATTGCAGTTCATCTATAGTGAGGGGGATTAATATAAACTGCAGTAGAGCCCC----CCAAAAAGAAAGGTATGGATAGGGTTAATAACATTTCTCACTATATACGGCTCAACTCCATCAGTACGCAACAAATGGAAATATGCACCATGAAATATATTCCATGTTTAGTGTATCAGGTGGTTACAGATTTGCTAGTGGTT-AATGATTTATTAGCCACCTTGTTTCAGATATGCAGAAGCTGAATAACTTACTTATAAACTGTCAAT-ATTCATGACCAAA s mm3.chrUn_random 180978 1257 - 117911829 TAGAATACATTCAGTTACTGATGCAATATCca---ca-----------------acaca-----acaca---------------acacacacacacacacacacacacacacacacacgtatgcacacaTGAA-----CATGGGCT-GT---AACTAACTTGGAATGAGCCTCAGA--CTTTCTTGCATAATATTGCAAGAAGCCACTAGT---------------------ACACTGGGAATAGTCTGGCATTAGCACAGTAGATAAACTGCTCAACTGCAGTCCC-----------------------------------------------------------------TTGCCGTGTG------------------------------TAAGCACAGAACGTTTTC--------------------------------------------------------------------ACCTGCATCTAAA--GCCACTCTTTTTCTTCTAGGAACTCAGTAAGCTGTTTCAGATCTCCTCAGCTAAACCGCATCACAGTTGGAGGTTCCATGTGAGCCATCCCCATTCATCACATGATGGAAAAGACAGAGAC-CAGTGGAAGGTCTTGGGAGGTATAAAGTCTTTAAATTTACCTGAAATTTTTTCTTGAAATTTCAAGAGAGATATTGAATGAAGAGAATTCCAAGTTCAAA--AAAATCATTAAAGAAATCAATTTGTCTTTGAAATACTTTAGTATGCCACTTCAGACAGACCTGGAAAATGTGTGTATTAAAATATATTTTGAAAACTGACA-TTTTTCTTCTTTGGGCCTGAAAGAAATTTGGGTATCATCATAAGCTGCATGACCTCAGCACACCTTCATG--ACTTTAAGCCTAGAACTTCCTTCACAAGTGGTGAGATTTTCTGCCAAAGGAGAGGAC---------CATGAAGATAAACTCCAGGCCACTCACAACTACCTCACAA--CACACTCCCAGAGGAAACAC-TATTTAATTTCTAAAAAGCAAGTTACTTATAATAGTTTGTGACAAACGACAGAAACAAACTGCTGCAGAGCATGAGT-------------AGC-TGCAGAGTCAAAGCT-AGAATTGTGCCGTTTGATGTTTAA-TGTGGTGTAGGTGAGGGGAAGAAACAGCATTGTAAAA-------GCAATCACTCAGTCAGACCATTGTCATACTCTTGCGTTATCCACCTGAAAGGCAGAATTTAATCTGG-CTAGATTTTTAATCCAGATTAAATTAAATCCACGGCAGTTCACCTGGGTTGA--------------------AATAGAGCCCCACTCCCCCACAGCACACCATGGATCAGGCTAACAGCATTTTTCAGGATGTGTTTCT-GGTTCCATCAGTATACAACAGACCTAAATATGCATTGTGCAATGCATTCCATCCCAAGTCCTTC-------------------AGTGATTAAAAGATTTACCATTCA--GTATTTCATATGTACAGAATCTCACAAACATGCATAAGGATTGGCACATTTTTGTGATCAAA s rn2.chr14 88382630 1180 - 107821284 TAGAATACATTCAGTTACTGATGTAacacaca---cattc--------------acacac----acacaca------------cacacacacacacacacacacacacaAACTTACATGTATGCGCACATGAA-----TGTGGGCCAGT---AAACAACTTGGAATGAGCCTCAGA--GTTTCTTGCATAATAATGCAAGAAGCCACTGGT-----------------------------AATAGTCTGGCGTTAGCACAGTAGATAAACCACCCATCTGTATTCCCG----------------------------------------------------------------TCACTGTGTG------------------------------TAAGCACAGAATGCTTTC----------------------------------------------------------------TTTTACCTGCACCTAAA--GCCATTTTGTTTCTTCTAGGAACTAAGTAAGTTGTTTCAGATCTCCTCAAGCAAACCACATCACAGTTGGA-GTTCCACATGAGTCGTCCTCACTCATCACATGGCAGGAAAGGCTGAGACGCAGTGGAAGGTCTTGGGAGGTATAAAGTC-TTAAGT--------------------ATATTTCAGGAGATATATTGAATGAACAGAATTCCAAGTTCAAAAGAAAATCATTAAATAAATCCCTTTGTTTTTGAAATACTTTAGTATGCCACTTCAGGCATACCTGGAAAATATGTGTATTAAAATATATTTTGAAAACTGACT-TTTTTCTTCTTTGGGCCTGAAAGAAACCTGGGTGACTTCAGAA--------ACCTC--CGCACCTTCATG--ACTTTATGTCCAGAATTCCCTTCAGAAATGGGGAAGTGTTCTGCCAAAGGAGAGGACAGTTAGCAATGTGAGGAAAAACTCCAGGTCATTCACAACTACCTCATAA--CACACTCCCAGAAGAAACAC-TATTTAACTTTTAATAAGCAAGTTATTTATAATAGGTT-TGACAAACAACAGAAACAAACTGGGGTAGGCCATGAGT-------------AGC-TCTGGAGCAAAAGCT-AGAACTGTAGT------------------------------------------------AAG-------GCAGTCACTCAGTCAGACCAATGTGACACTCTTGACTTATCCACCT-AAAGGCAGAATTCAATCTGG-CAAGATTTATAATTGAGATG-----------ATGGCAGTTCACCTAGGTTGA--------------------AATAGAGCCTCACTTCCTTATTGCACACCACAGATCAGGCTGGTAGCATTTTTCAGGATGCGTATCT-GGTCCCATCAGTATTCAACGGACCTAAATATGCATCGTGAAATACATTCCAACCCAAGTACTTC-------------------AATGATC-AAAGATTTACCACTCA--GTATTTCATATCTACAGAATCTCACAAACATGCATAGGGATTGGCATG-TTTTGTGGTCAAG a score=91280.000000 s hg15.chr4_random 57070 1011 + 1219494 tttaatgaacaaaatttagtgagaatagtaactttattcttaaaatatctttcatgtctgatttaatcaaaaatattaagatttttgtgtctgcttctccattcactgtatctgtcacaatattacatatgttgtgctgaaaatttatac--tgtaac-tcgagagaataagaatgaaacaggaaaataaaaccttgatattat----aaaagtagtttaccttgatgac-catcaaaaggatctcagagactttcaaggatcttcaaatcaaactttgaaaaAAACTTTGAACAGTATTACACCCATTTATTTTTATCCTCTTTCTAGTTACATATACTGAAAACCACATGATTTCATGTGTGTatgtaactcacacatactctcattgcttgttatactactacaggaatatacccccacaaacacggtaattctcat--aaaaccagtttcattcaattctcaacaa------aaaaattatagtaaatgtataattctatgtgctttaatatcaaacatactcctgacagaagagatcttcctgttacatgaggcatcaatgaaagatgaaaactctgcttccaattttactgtctgacaactggtagaatttcccacagactacttt-----ctggcttccaacctt---acagactttttctcttccattcaccacataaccac--------attacttctgctaccaaacatcacaaga------cacattgtgataccagctctggcctttcacttgg--tgtccctatacctgtacttggtgcattggaactttaggggatgggtgaaataggagtatttctggaagctatttctaaaataaaacaaccagaaacaactatttaca--------agccacataaatataccccactaaacccaaactaaaagtgttctcaatttaacctttcataggtggatcacaaaaacacctgtaactacatcaatgccatttgacacaacatgaagtatgataaaaggaaagtcagagtagaaagagaagtcataacttgttgtggttaaaatatc s mm3.chrUn_random 182237 906 - 117911829 TTCAATAAAAGAGGGGCAGCGAAAAGAATGACTTTAGTCTTGCAA-ACTCCTCATGTTTGATATACCAAAAGATGCAATGACTCCTTCATCTGCTTCTGCATAGG----------------------------ATGTTGGGAATTTTTACAGTGTAATATCTAGAGGGGTAGAATTTAAAAGTAAAATAGCATTTGACTATTAATAT-AAAATGGATTGACTTTGC-----CACCCCAAGAATCTTAGAGACTTTCCAG-------CCATCAAATGTTGAGAACGACTTTGAGGATGGC-----------ACCTTACTCCTT--TCAGGTTACATACATTGAT---------CTTCCA--------------GCACAGGGATCCCCAGTGT--------TTATTAGAATta----------ctaacacaggaattctgacaaaaaatcaatttcgttcaatgcatacccagaaattaaaaattgtcataa--gcctgattataaatgctgc-atatgaaatacactcctgagtagaacgacttcccaggtaaacaaggcatcagtggaaactgaagcctgtgttaccagtttgaccatctgatgactggtagcatttttcttagaccagtcttaagactggcttcaagggttcagacattctttttctcttccattaagga-----------------agg------------aagaaccataaaatgcagtcacacgctgatgccacgtttgacctgccacttagaaggtctc---act---atttgctgcatgatgaccctgagtgac------aattacagcattcctagaagccatttct-acatggtaaaaccagaaataactgtccata--------aaccatgtaaacatgctctactaagcctaaactaaacgtatcaccaa-ttaattttccttaggtatgtctaaaatatacctatggccacattaatgctgtctggcacaaattatagtaagac-aaagaaaagccagagtggac--aaaagttataaccagctgtggttaacatatc s rn2.chr14 88383812 940 - 107821284 TTCAAAAGGAGGGGGGCAGCAA--------ACTTTAGTCTTGAAA-ACTCCTCGTTTTTGATACACTAAAAGATACTATGATTCCTTCCTCTGCCTCTGCATTAG----------------------------ATGTTGGAGATTTTCACAGTGTAAGATTCATAGGGGTAGAACTaaaaggtaaaataacatttgaatattattataaaaatagatttactttgccaatacatccaaaggatcttagagaccttccag-------tgatcaaatg-tgagaacaactttgaggaTGAC-ACTTCTGTTTACCTTAATCCTC--TCAGGTTACATATATTGAC---------CTTCCA--------------Gcacaggaatccccaatgtctgtttcactgttacaagtgtatgac----ctgacacagtaattctgac-caaaatcaagttcaatcaatccacacccagaaattaaaacttgtaataa--acctaattataaatgctgc-atatcaaatacaatcctgaatggaatgacttccctggtcaacaaggtatcagtgaaaactgaa--------------tctcactacctgataattggtagcatttttcttagactagtcttaagactggcttcaagtgttcggacattcttttcctcttccatcaaggacataaatgccttctgtcagc------------aagcaccataaaatgcagtcacatagtgatgtcaactttgacctgtcacttggaaggtctcca-actttgacctgtcacttggaaggtctcagtg---------tttgctgcattcctagaagccatttct-acatggaacaaccacaaataactacccataaaatatgtaaacatgtaaacatactctgctaagcctaaactaaatgtatcaccaatttaattttccttaggtatatctaaaatacacctgtggccgtatcagtgccatctggtacaaatcagagtaagac-aaaggaaaccctgagtggac--agaagttataactagctgtggttgaaatatc a score=37140.000000 s hg15.chr4_random 58081 473 + 1219494 ttactttttcaaaagctacaaaacacaggatcctgtgaaccca-tgctagtatcatcttaggatcttggaagag-accagtataagtgaagggccctgaagtttcaacttaaacttcactagcttcataataaatacatctctgCCTCCCCACCTTTACCCAATTTTAAACATTCTACTTGCCCTTCTTTCCTCTGCATTTTGGGTTTTTCAATAATCCTATTTATGTCTTTATTAGAAGATACCAAGTTTGTAATAATACCTGCCTTGTTCTGGGTGACAAATTCTGCTTA----TACCATAAAGTATGTACCTCATGTAGT-ATATACTGAGGGCATTTTACAAGGGAAGTACAATATATTTCTGGAAAATTACATTCTAATTTACT-------CTCTTTTGGCCAGAAAAACT--TTGA--------CAAGGTAATAGATACCAAAGTCTAGAGAagtgctatccaaaagaaatataatgtgagccacatatgt s mm3.chr5_random 519251 389 - 1172935 ttacttttgcaaaagctacaaaatatagggtcttgtgatttcattactagcaccagcctaaggccttggaaggg-ttc--tattagagaagaaccccagagcttaatct-------------------------------------------------------------------------------------tgcattTT--ATTTTGTAATCATCCTA-TTATGACCTCATTTGATGGCAAGAAAGTCACCACAGTGCATCTCTTTTTCT----GACAAATCCTACTTAAGAGTACCAAAGAG----------AAACAGTTATATGCCTAGAGTGCTCTGTGTGAGAAATACAAAGTATCTTTAGGACATTAAAGCCTAATTTATTTCTAACCCCAATTTAGCCATCAAAGCTAATAGATGTAAAAATAAGGTAAGGTATGT-AAATTCTAGAGAAGTTTTATT--AATATTATATATTGCTAGCTTCATGCAT s rn2.chr14 88385468 394 - 107821284 ttacttgtgcaaaagttacaaaatatagggtcttgtggtttcattactggcatcagcctaaagccttggaaggggttc--cattagtgaagagtcctcgaggttaatct-------------------------------------------------------------------------------------tGCATCTT--ATTTTGCAATCATCCTA-TTAGGGCCTCATTTGATGGCGACAACGTCACCACAGTGCATCTCCTTTTCCAATCGACAAGTCCGACTTAAGAGTATCAAAGAG----------AAACAGT-ATATTCACACAGAGCCTAGGGTGACAACTATAAAGCATCTTTAGGACATTGAATCGTAATTTACTTCTAACCCCAATTTAGCCATCAAAGCTAATAGATATTAAAGCAAGGTAATATATGTAAAAGTCTAGAGAGGTTTTATT--AATAATatataacaccagcttcatgcat a score=429.000000 s hg15.chr4_random 58554 12 + 1219494 gtctgtaaattt s mm3.chr5_random 519640 12 - 1172935 TATTATAAATTT a score=40793.000000 s hg15.chr4_random 62768 419 + 1219494 agtgatacatgccattatacatttatcaaaatc-------cataaaatacacaatgcaaagagtgaatgctaatgtaaactatagaatttagttaataatgtattt-----tattggatcatatatttaacgtatcttaatgtacaattgtagcaccaattgtaacaaatgtgccacattgacgcaagatgttaataatagaattaactgta-ggggaaaggaagaggaggtgtaagtgggaactc-ctggacttcctcttcaatttttctgtaaacataaaactacttttaaaaatctattaa--ttttcctaaaaTATACACACACAAAAAAACC-CCACTGGTTAGTATTTTAAAAT-ATTAGCCCACAGTGTTTGCAAATTGGTGTGGTTTGCTTAAAATGACCTCCCCCTAGTGGTGCTGAGACAGAAAAAC s mm3.chrUn_random 418824 355 - 117911829 aGTAAAACATTC---TTTACATCAATCTGAAAC---AATATatataatacacaacacaaggtgtgaaccttaatataaaatatgcaacccagacaatagtg-atttattaatattagatcat----------------------------------ctaacgcatcaaatgaaccacaataatacaa------------gaaattaactacgttggaaacagaaaaagaaaggtaactgaaaaatctctacactttcccttccatttttc--------------------tAAACATCTTCTAA--TTTTTTCAAA----ACACATACCAAAAACTCACAAATGGTTAGTATTTTAAAATAATCACCTCACA---TTTGCAAATTGCTATGATTTGCTAGAAATCTCCTCCCCCTAGTGGTTCTGAGGCAGTAAAAC s rn2.chr14 88386298 367 - 107821284 AGTAAAACACTC---TTTACACCAACCTGAAATTTAATTGcataatatatacaacacacggtgtgaaccctaatgtaaaatacatgacccagacaagagtg-atttgctaatattagatcat----------------------------------caatcgcatcaaatgaaccacaataatgcaagaggctggtgatgagattaactgtgtggggaagagaaaaagaatggtaactggaaaatccctacactttctcctccatttctc--------------------tAAATGCCTT-TAATTTTTTTTTAAA----GCACATACAAAAAACTCACAAATGGTTAGCATTTTAAAGTAATCTCCTCACA---TTTGCGAGTTCCTATGATTT-CTAGAAAT---CTCCCCCTAGTGGTTCTGAGGCAATAAAAC a score=24836.000000 s hg15.chr4_random 65479 259 + 1219494 TATCTATTACCAACC-AATAGGTGTAGAGTGCACAAGAGAATTACTGGTCCTAATACCTGATGA-TTTCCTGAAACAAAGAATGTGGAGACTCAGTCCCTATTGTTCCCATTTGGGGTTTAGTCGCTAATTCTGATGAAGTAGGAACAACTCCACATGGTGCCTCACACTACCCTATATCAAAT---AAGTGATTATTTTA-AAATACAGTACATCTGGGATTCTCAAAAATTAA-CATTAACAGTCCTCTCCT-TCCTGAAGAAAA s mm3.chrUn_random 420247 236 - 117911829 TGCCTATTATTGATAGAGTGGGTATAGGATGCTCACTGAGGTTGCTGGTCCCAATATCTGATTG-CTCTCTGAA---------------ATTCAGCTCCTATTG-CTCCATCTGGGACTTG---GCTGATTCTGATAAA----GAACGCCCGCACATGGTGCTTGATTCCACCCTATAACAGATAAGAAGTGATTCTTTCATAAAGACAG-------AGACTAATCAGAAATTAAGTATTAACAGTCCCCTCCTATCCTGAATAAAA s rn2.chr14 88387262 233 - 107821284 TGCCTACTGTTGATAGAGTGGGTACGGGGTGCTCATGGAGATTGCTGGTCCCAATATTGGATTGGCTGTCTGAA---------------ACTCAGCTCCTGTTG-CCCCATCTGGGATTTGATGGCTAATCCTGACGAA----GAACCTCCCCACAAGGGACGTAGTTCCACCCGGTAACAGACGAGAAGTGATCACTTCATAAGGATAA-------AGACTAACCTCAAATTACGCAT-------CCCTTCCTATCCTGAAGAAAA a score=9464.000000 s hg15.chr4_random 65738 98 + 1219494 CAT---------------TAACAAGAACTCTGAACTCTATACAGAAGGCATATGAGTGTGTT------------------TGTGTATATGCATAGTGGACTCCAGAATATTACTCTAGTCATCTTTTTGCT-- s mm3.chrUn_random 420626 125 - 117911829 CATACAACCAACAAAATGTAATAAAAAAT---AATTGCATGTGAAAACCATGTAAATGCAGTGTGCACTGTATGTGCTCATATGTGCGTGCACACTAAATTCCAAAATAT---TCTAGCCATTCTTCTAAT-- s rn2.chr14 88387637 127 - 107821284 caCACAACCCATAAAAATGAATTAAAAAT---AATTGCATGTGAAAACCTTATAAGTGCAGTGTGCATTGTGTGTGCTCCTATGTGCATGCACATTAAATTCCAGAATAT---TCTAGTCATTCTTCTCACTT a score=9574.000000 s hg15.chr4_random 65836 75 + 1219494 TACTTTGAATATGTAAAAATATTTTCATTTAAAAAGTAAAACAAATTATTATACCAGTGT-----AAAATATGCACTATT s mm3.chrUn_random 421078 75 - 117911829 CACTCTGCATATGAGTGAAAGTTTTCATTTAAAAACTAAAA-----TATTACAGCACTGCTACAAAGAGTATGCACTATT s rn2.chr14 88388062 75 - 107821284 CACTCTGCATATGTGTGGAAGCTTCCATTGGAGTACTAAAC-----TACTACAGTACTGCTACAAAGAGTATGCACTATT a score=98635.000000 s hg15.chr4_random 75147 1198 + 1219494 TCTGAAAAAAAAAGAAATTTTGAATCAAAAAAAAATTTGTCTCTGTTGATCCAACTATATAAAAAATTAAGTTGGAATTTCCTATCATTGTGAATT--------------------------GTTTACTCTT-------TATCCCTTCCTGAAAACTGGAATCAGTGAGATAATTT--TTTTTTTCTGTTTATCCCTCTCTGTTGCTGCAACATGATATTTCCTAAGGATAACAG-AGGGGGCATTTGGTAAGAGAACAAAAAGAAGGGAAGGGAGAGTTTTTAGGAATAATATCAAATGGAAGACAAGCTAAGAGGTGGTCTGTCTTAGCAATGTGAAAGATCTTACCACCTCATAGGCACTCCAT-CCATGGAATGAGACCGCTCCATCAGCCCTATCCAATGAGGAATCAGATAGAAATGACTACTTGCTTTGGAAGCCTGGGACAAATAAAGTGTGGGGCCTAAACTAAAATAATCTAGCAGCCATGGAAAATGCTTAAATCCAAAGGGAAGGTTTTTTTGTTCCCCTCTGCTGTATAGAGTAATATATAAACTTAAACTGTTATTTCTATGAGAGATGGAAGAACTCTTATCTGTGAGTAG--CCAGTGAGGATGACTAATTGCACCCATGCCCCTGAGGGATCTATATGAGTTGCAAGATATGACTCTGACCAGGACTGTGTTGTACATTCTTGTGGGCACTATTTGTGTGATTGATCAGCT-AATGTAAGATTGCTTAATTATGTCCTATTTCTCCCCAAACTCTAACACTCGGAAGGATGTAGTTGTGGGGTAACAGAAAAGGAAAATTCCTGTAC---AATAAGCACCAACATGCATATATAACACTGCT-AAAAATCAGACGTTGTGTCAGCAAGTTTCTTCTAGTTAATTACCAATCATTCACCCACCTCCACGTTCTGTCTGCCCTACACACTGTAATCGTAATCTGGTTTGCTTTTCAAAGAAATGTCTCACCAGACTAATTGAAGCTAGTTACACCAATGCAATCTTAAGAAACATGCTTAGGGAAGCTTTTACACCATGCCAAACAAGTGACTACTACATG--ACTGCCGAAAGTCATAAGCTTACATTCTCAGATCTGATCAAATCTGTCTTTAAACCA-TTACAATCGTAAGCACATTAAA-----------ATTTTGACAAATTATTCTAGATGCTT-TAAAGAAGTCAAATAGTGGGCATACTGCAGAGTTGACATTACACACATGACATATTTGAAA s mm3.chrUn_random 421694 1035 - 117911829 TTTAAAAAAAAATGGTATGAGAAATCA---------TTACCTGTGTGGACAAATCCAAATAAGAAGTAAAGTTGGAATTTCGTGTTACTTTGGTTTTGGTTTT-----------------TGGTTTGATTTT-----CTTCTCCCTACTCCAAAACTGGTATTGGTGCGAGGATTTGATTTTTTTCCCTTTGTCTTTCTCTGCTGCTCCAGCATA--A----GTAGGGGAAACAG-GCAGTGTGTTTGGTAAG----------AAAAGACCATGCTAGTTTTTCAGAATGACGTCCA---------------------------CCTGAGTGGTGTGAAAGCTCTAACCAAC-TCTAAGCCCTCCCTCCCCTCACAGGATA-------GTTAGCCCTCTCCCATG-GATATCAGACAGAAACAAC------------AGGCCTGAG-----------CCAGTGTCTAAGGTAAAGGAACTTAGCAAACATGAAGAAGATTTTATCCCAGAGGGAACA-TACTTCCTCCTA--CCAGTGTGAAGTAAGATTTTTAGACAAACACCCTTGTCTTGATGATGAACGGACTGATGCTTGACGGTGAGTGGAATCTATGAGGCCAAATTACTTCAGCCATG-CCCTCAGGGCTCCTTGTGGG--------------------------AGTTTTGTGTGTTC-TGTGAGCAATG--TGTATGCTCAAGCAGTTAGCTATGAGACTATTTAATAATG--CAGTCTCTTCTCACCCACT--------------TCCACTGGTGGAGTGTCCACCAAGGAAATCCCATTTACTATAATGAGTACCAACACAC---TTTATCACTATCATCAGATCAGACTTTGTGTCAGCAGGCTTTACCTAGTTAATTACCAATCATTTTTCCAAGTCCACACCCTGTCTGCCCCACACACTCTAACTGT-GCCTCATTTGCTTTTCAAAGGAATGTCTCGCCAGACCATCTGAAACTGGTT------ATTCAGTCTGCAGAAACATGCTCAGGGAAGCTTC--------GCTCA--------------------CCTGCTGAACATCAC-----------CACATATCTGATCAAATC--TCTTT-AACCATTTATAACACTAAGCACATTTAACATGTTCTTACATTTCAATAAATTATTCTATGTGTTTAAAAATAAGCCAAA----GAAGACACTGTGG----------ACACACATGACACGCTGAGAA s rn2.chr14 88388665 1075 - 107821284 --------AAAATGTTATTAGAGATCA---------TTCCCCCTGTGGACATATTCAA-CACGAAGTAAAGTCGGAACTTCG-GATACTTTGGTTTCGGTTTTGCTCTGGCGTCATGTTTTGGTTTGGTTTTGTTGTTTTCTTCTTCTCCCTAAACAAAGACTGGTGCAAGGATTTGATTTGTTTTCCTTTGTCTTTCTCCACGGCTCCAACACTGTA----CCAGGGGTGATAGTGCAGTGTGTTTGGTAAG----------GAAAGAACGTGCCTGCTTTTCAGAATAACATCCA---------------------------CCCAAGTGGTGTGAAAGCTCTGGCCAACGTCCAAGCCC------CCGTCACAGGACA-------GTCAGTCCTCGCCCGTG-TATATCAGAAGCAAATAAC------------AGACCTGAT-----------GGGGTGTCTAGGATAAAGGAACTTAGCAAACATGGAGAAGATTTTAACCT-GAGGGAACACTACTTCCTTCTC--CCACTGTGAAGTGAGGTTTACAGACAAGC-CCCTTGTCTTGATGAGGAATGGGCAGATGCTGGTTTGTGAGTGGAAT-TATGAGACCAAGTAACCTCAGCCGTG-CCCTCAGGACTCCTGGTGGG--------------------------AGTGTTGTGTGTTC-TGCGAGCACTG--TGTACACTCCACCAGTT-GCTGTGGGACTATCTAACAATG--GAGTCTCTTCTCACCCACT--------------TCCAGCTGTGGAGGGTCCACCAAGGAAACCCCATAGACTGTAATAAGTACCAGCACAC---TTTATCACTAC--TCAGATCAGACTTGGTGTCAGCAAGCTTTACCTAGTTAATTACCAATCATTTGCCCAAGTCCACACCCTGTCTGCCCCACACACTGTAACTGT-GCCTCATTTGCTTTTCAAAGGAATGTCTCGCCAGACCACCTGAAACTGGTT------ATTCAGTCTGCAGAAACATGCTCAGGGAAGCTTC---ACTATGCTCAACAAGCAGCTGCCACAGGAGCCTGCTGAACATCACCAACTTTCACTCACATACCT-ATCAAATC--TCTTTAAACCATTTATAACGTTAAGCACATTTAATACGTTTTTACATTTCAATAAATGACTCTATGTGTTT-TAACTAAGCCAAA----GAAGGCACTGTGT----------ATACAAATGACATGCTGAGAA a score=27018.000000 s hg15.chr4_random 76662 302 + 1219494 ATGCAATTCTCTTCCCCTTCCCCCAAGTTTCTCTTTCTT---CATCCTTATTTTTGTTAATGGTTCTACCACATTCCACATTACCAAAGCTCATAACCATCGTGACCCTTTATGCTTCCCTCTTCTCCTGCCCATCATATTCAATCAGGTGCCAATCCTCTCCTTGTCTGCTTCAACACCCTGGTGACATTGCAAAGAACATTAAGTAAGAGCATTTACTTGGAAAACAAACTTGACAAACTCTCTAGCATGTCATAAAAATTAAATAAAGATTGACTATAATTATTATTTATTGCACTGTAAGT s mm3.chrUn_random 422729 283 - 117911829 ATGAAATGGT-------CTCCCTCATACTCCTCTTTTCTGTAATTCATTATTTGTGTTAACTATTCTAGCACAGTTCATGACCCCAAGATGTACAGCCATCAGGAGCCTTTATCCTGCCCTCTTTCCC-CATGATCACATACAGCCAGATGTGAATTTTA----TGTCTACATCAACTCTCTGACAAAACTGTAAGGAATC-TCGGTATTAG---TTATTTGTAGACT--ACTTGCCACCCTCTCTAACACACATTAGGAATGCAATAGC-ATTGACC---ATTATAATTCATTACATCACAAAT s rn2.chr14 88389740 269 - 107821284 GTGAAATGGTCT---CCCTCCCTCATACTCCTTTTTGCTGTAATGTCTTACTTGTGTTAACTATTCCACCACACCTTATGACCCCAAGGTTTGCAGCCATCAGGAGCC-TTATCCTGCCCTCTTCCCCTCATGATCACGTACA-TCAGATGTGAATGCTA----TGTCTAC-----------------ACTGTAAGGAATA-TGGGCACTAG---TTATTTGTACACT--ACTTGCCAACCTCTCTAACACACATTAGGAATGTAATAAC-ACTGACC---ATTATAATTCATTATGTCACAAAT a score=172316.000000 s hg15.chr4_random 77551 1736 + 1219494 ATcccacaatgattcttataccaatggaataaaagtt-atagtaggaagagccaagtgtaaggaagcccctggaactgtacaccttcttccttactcccaacaagatagcaagtcttgtagggagaattgcagagattagcattatgatagaaaacttggaagatacagaaaaggtgtcctaccacctccccatttaactcacctgtctggc--tggtggaaaagctaaatgggtcatgaggaattacagtggattgttgcaatcttaatcaggtgatgatgccagttgcaaatgtatttccagacgtgataactttattggagcaaatcagcatagcccatggcacctagtatatagctagtgatctggt-agctgtttctttctgttctaatcagtaagaaacatcagaagtaatttgcttttaaaaaacaggaacaatgtaaatttatactctcttgccctaggactatgtcaactctcctgcaatctagccta--acagtcctgagggtactggatcttctttatattccatagaacatcatgcccatccagtacattgaagacacaatgcaacaggattggattaacatgaggtagcaagccagagggtagaagataaacac-caaaac---------attaacggtgctaacaacatttctaggggtctagtagcctgaggcatattgggatagctaaagttgtttccaagttgttgcatcttgtaccaccttacaaaaaga-----aagaagcacaattcttgttggacttctttgtgttttgaaggtaaagtataccacaTATTGTATAACTCAGAAGGC----TGGACATTTTGAGTAG---ACAGAACATGAAAGGG-GTCCAT-----------CCTtgttacttgggcattatgacccagaagactcaaatgtgttggaagtatctgcagctgtatgagacttgtggcaagccccgataggagaataatagcacagaaccttaggggtttctttgtgaaaaagtagtttttgccttgctactggattccactagacacaatatgcctgactatgggatgc-caaatgat--tgttatttgagttgcccatcttgaactgtgtgatatatg-atcaactgaaccataaaatggaacataacagcattttattttaaatggaaacatatatgatatcaggctccagcaggtctggagggctcagttagattgcaccagtaagtggtttagacttccatatacttcctct---------------------------------------------------------------------------------------------------------------------------------------------------------tgA------TGAGTATG-----------------------------------------TTCCTG--------------------------GCTCATGGATTTCTGTATGGTATTCTGGCATCAGCAGAAAGTAGACA-ATCAATGTACTACAACCccactcaatgagcagaactttaaatggaatttctggttatctattttgtgtagaaggagacgatggcttgtgatacagatctacactgactcagggttagtaccagatgggtcacctggtcagggacttggaaagaataaaattgaaagattggtgataaggagggtctagaagacaggttatctggacagtcttctcagaatgggacacagtatgaagatttttttttttctcatgtaaatgcctggtagaagaaaaccaaagtagaggaaattctcaataatcaatatggcttcttctgagagtgacatttagcctctttccctggccaccttggtgtttgcccaatggtccagtatttgaagtgacaatagtggcagggatagatgttattcaacgactcaacaacatgttgtctcccctgcaaagttgatctggct s mm3.chr5_random 569799 1816 + 1172935 ATTCTTCCATACTTCCTACACCA--GCCATGAAACCTGATTGTATGAACTATCAGCTGGAAGGAAACTTCTGGAACTTCATCCCTTCATC---ATTCCCAATAAAGTGTTCTGTCTTGTAGAGGATGCTAAAGAGATTAG---------------------AGTTGCTGACAGGGTGTCCTATCATCTCTACTTTTAGTCAACCTACTTGACAATTATGAAGGAGCACTATGTGTCATGGGGTTTTAAAGTGGACTATTGCGAACTCATTCAATTAATGATACTAGTTGCATATTACTTTCCAGG-----------------------------------GTGGAACTTGATATATAGTTATTGATCTGGTAAACATTTTCTTTCCATTACATTCACT-TGAAATGTCAGAATCAATTTGCTTTTAAAAAGCAAGGACA-TACTAGTTCGTGAT---TTAATCTAGGACTAGATAAACTGCCTTACAGTCTGTTATAATACAATTCTGAGAGTCCTTGG--TTATTTATATCTTATAAGGCATTGTGACTACCCAGGACATTGAA---CCAGTGCCACAGCGTTCTATTAATATGAAGTAGCAAGCTTCA-GGTAGAACTTAACTCCGCATAACCCTGTAGAAGTTCATGG-GACAATTGCATTTCTAAAGATCTTGTGTTCTGAGGCATGTTGGGATAGCTGAGGGTATCAGCAAGCTGTTGTTTCTTATGCTACCT----ATAGGG-----AAAAAGTCCAGTAGTGCTT-GAC-----TCTGTGCTGAAGACAGCAAA-ACCACATATAGGATGTCTCAGAAGGC----TAAACATTTGGAGTAGGATATGACAAACAAAGGGGTCTCTATAAAGTAAATTCTATTATCATATGGATATTAGGTCACAGAAAACTTCAATATGTTAGAAGCATCTAGAGCAATACGGGATACATGGCCAGCACTGGCAGGAAGATGTCATCATGTAACCTTAGGTGCTTCCTTGTGAAA-GGTAAAT-----CCTAGTACTG-------CCAGAGACAAAGTGCTTTTCTGTGGGTGGTGAAAGTGACTGTGTCATCTGAGT------CCCTCAACTATGTTGTGTATGTACCCATTGAACTGTAAAGCAGGATACAACAAC-----AGTGAAAATGAG-A---ATATGG----------CAGCAGGTCTAGAGGACAC----AAATTGCAGAAGCAACAGACTCAGGTTTCCACATTCTTGCTCCCCGCACtttttttatttttatttttttaaGTTTGAGAGCTTTCCATCCACTTATAGGTCTGTCATCATAAGGAGTGCCAT---------Gccatatgtccaggttcgctttaggcagtgctagtttacccctgctgtctcatgtaatcatcagtga------tcactgtgaaatgtatcccACCTCAGAGGAATCAGATGTGTGGCTGCTCTGCCTGTGAGCAGCTTATGTAGAGGACAGTGTGTTCATGGATTTCTGTGTCGTGTTTTGGTGTCTGCTGGAAGTTGTCA-GGAACTGTAGT------------------CA----TTTAAATGATGTGTCTGATCGTCTATTTTGTGTGGCAAGGGA-GATGATCTGAGAGTCAGGATTATATTTATCCAGGA--AATTCCAGATTTGTCTCCTGGACAGGAATTTGAAAAGAATAAAATCAAAAGATTAGTGGTGAGGTGAGTCTAGAAGAAAGGTTGGT-AGGTAAACTTGTCAGGGTGGGATATAGTTTGAAG--TCATCTTTTTCTCACATAAATGCCTAGTAGGAAAAAAACACGATAAAGAAA---CTCAATAGTTAATATGGCCG-TCCTTCAAGTGATATTTGGCCTCTTTCCATGG---GTATCTTGTTTGTACCAAG--TCAGTGTTGGAAATGACCAC-GTGGAAGTGATAAAGGACATTCAAGGACCCAACAACATAT--TTTTCTCACAAAAATTGATTTAGAT s rn2.chr14 19387518 1732 + 107821284 ATTCTTCCATTCTTCCTCCACCA--GCCATGAACCCTAATGGTATGAACTATTGACTGGAACGAAGCTTCTGGA------------------------------------------------------------------------------------------------TAGGG-GTCCCATCACCTCTGCTTTTAACTAACCTGCTTGAGAATTGTGCAAGAGCACAATGTGTCATGGGGCTTTAAAGTAGACTATTGTGAACCCATTCAACTAGTGATATTAGTTCCATATTCCTTTTCTGG-----------------------------------GTGGAACTTGATATGTAATTATTGATCTAGTAAACACTTTCTTTCCATTCCATTCACT-TGAAATGTTAGAATCAATTTGCTTTTAAAAAGCAAGAGCAATACTAGTTTGTGAT---TTACTGTATGACTAGATAAACTGA-----AGTCTATTATAATACAGACCTGAGAGTCCTTGG--TTACTTATATCTGATAAGGCATTGTGACTACCCAGGTCATTGAA---CCAGTGTCACAGCATTCAATTAACATAAAGTAGCAAGCTTCA-GGTGGAACTTAACCCCACATAACCCTGTAGAAGTTTATGG-GACAATAACATTTCTAATGATCTTGTCTTCTGAGGCATGTTGGAATAGCTGAGGATGTCAGCAAGCTGCTATTTCTTATGCTACCT----ACAGGAAGCATAAAAAGTCCAGTAGCACTTGGAC-----TGTGTGTTGAAGGCAGCATA-ACCACATATTGTGTGTCTCAGAAGGCTAAATAAACATTTGGAGTAGGATATGGCAAAGTAAAGGGTGTCTATAAAGTAAGCTCTATTATCATATGGATATTAGGACACAGAAAGCATCAGTATGTTAGTAGCATCTGCAGCATTATGTGATCTATGGCCAGCGCTGGCACGAAGATAACAGCATGT-ACGTGAGGTGCTTCCTTGTGAAA--ATAATT-----CCTGGTA-TG-------CCAGAGACGAAGTGCTTTTCTGCAGGTGGT-AAAGTGATTGTGTCATTTGGGT------TCCTTGACCATGTGGTGTATGTATCCATTGAAC------------TATAATAAC-----AGCCAAAGTGAGAA---ATATGG----------CAGCAGGTCGAGAGGACAC----AAATTACAGAAGCAAGAGACTTAGGTTTCCACATTCTTGCTCCCTCCCC---------------TTTTTTAACCTTGAGAGCTTTCTATCCGTTTATAGATCTGTCATCACAAGGGGTGCCATGTCAGAGTAGCCATA-GTCTGGGCTCACTGTAGGCAGTACTAGTTTACACCTGCTGTCTCATGAAAGCATCAGCGACTCCCTTCACTGTGAAATGTATCCTATTTCAGGGCCATCAATTGTGTGGCTACTCTGTCTGTGAGCAGCTTATGCGGAGGCCAGTGTGTTGATGGATTTTTGTATGATG-TTTGGTGTCCGCTAGAAGCAGTCAGGGAGCTGTACT------------------CA----TTTAAATGATGTGTCTGGTTGTCTGTTTTGTGTGGCAAGGGA-GACAGTCT--GAGTCGGGATTATTTTTATCCTGGA--AATTCCAGATTTGTCTCCTGGTCAGGATTTTGAAAAGAATAAAATTGAAAGATTAGAGGTGAGGTGAGTCTAGAAGAAAGGTTGGT--GGTAGACCTGTCAGGATGGGATACAGTGTGAAG--ACATCTTTTTATCACATAAATGCCTCGTAGAGAGAAAACACAATGAAGAAA---CTTGATAATTAACATGGCTG-TTCTTCAAGTGACAGTTGGCCTCTTTTCATGG-TATTGTGTTGTTTGTACCTTG--TTAGTGTTGGAAATGACTAT-GTGGAAGTGATAAAGGACAGTCAAGCTCTCAACAACAGAT--TTTTCTCTCCCAAATTGATTTAGAT a score=106657.000000 s hg15.chr4_random 79603 1140 + 1219494 attaccattattaagtgtccagatgatcagtaagagagactaactttgagcccctgctgtggcaagattcactggggaaaccagcATGTGT-GTCTCACAAAAGCATGCTCTGAATTGCAAAGAAGGACCAGCAGGGCAATGGTTGGAGTGTTAATGGAAAAACACAAATTCATCAGATAATGGGAACAATTCCATTCTTCCACTGTTGC-TGCTGCTGTTTTGC-TGAATACTCTTTACCAAAAGGATCAGTTGGAAAAGAAGAAAACTG--CTATGATTCAGCAGTTTCATCTGTGAgctttatctcatttcattctcataacaactctctatgctaggtcgtagccccattatagaaatgaaaacacagg--cacagagagattaagtttcacatcgaaagtcacatggataataagatgtgataccaaagtttgaacccagatctgtttATATGTATTGTACCATACTGCTTTTCAGGAAACTGTCTGCGATGCTAAGATAGATCTCAGTGGGTATCTGCTGGCTACTATGGAGGTCATTCTCCTACCCTCGCACCTTTGCCAGGGACACTAGGGGAGGCAAACTGAAATTTTTCTTCTGTATCTCTCTTTCAGCTGCAGTTGATGGAGTGAGGATGAGCAGAACCCTGCTTAAAGAGAGGGAGGCAATAGGTGGTGGCTACATGCTCCTGGTAAGCCTCCTGAA-GTCCCCAGGTTGGGAGGCATCTCAGGGCTCTTTTTTGTGGGTTGCATCTACGGAATCTCCATCAATGGATGTAGAGAAGTTTGAGTTTCATGGAGTCGAAGACCTGGGTTGGGCCACTTAGGAGAAGGTGAAGAGAAGGGGGTAGGAGGCTACTTTGTAGGAGTGACCAGATCTGGGCTGGGAGCCCTTTAATTTAGGTGTATAGCTCTGCTCG--ATACAACCTAGCCCTGGTGACAAGCAAGGGTCATTTTCTGCATCCCCCTTTCCCACATTATATTTCACAGGAATGAGCTAATTTTCACATGACACCCACATGGCTCTTTTTCTGTTTCTTCCTCTTGGAGAGTGAGGGCTCTCGCTCTTGAAACCGTTTCTAGAAACTGTTCTGAGAAAACTTGTCTGATTCCTCCTAGACTCTCCGATGACCCTCAGGCTGGG s mm3.chr5_random 571615 1029 + 1172935 ATTACCACTATTAAGTACCCAGCATACTAATAGCAGAAGCCAACTTTGAACCCATGATCTG---ATGTTTA----------CAGTACATGTGGTCTCCCAA----GTGCTATGAATTACAAGGAAGGAGCAG-GGGACTATGTGTTCAGTGTGGATGGAAAAGCAAAATGGCATCAGATAACGAGAACAATTCTATCCTCCAGATGCTACATTCTGCTGTTGTGC-TGACTTCTTTCTATCATATGGGTCAGTTGGGGAAGACGAAAA-GGATGTGTGACTCAGCAATTT-ATCTGTGTGT-TTAGCTCG----ATCCCAACATTAAGCCTGGGGTGG----AGCAGCACTGTTACAGGAAT-----CAAGAG-----------ATTATATTTCATATCCAGTGTTTTACAAATTTTAAGATATGATGTCAAGAATAGAATCCAAATGCAATTACATGTCTTTT--CCTGCTTCTTTTAGAGGCATTGTCTGCAGTGGTAAG-----TCTCAGCAAGTGTCTGCTAGTCCCCATGGAA-TCATTCTCCAT-CCTTGTACCTTTACCAGT--CACT-GAGAAGGTAAACTTAATTTTTATCT---TATGCATCTTCCCCCCCCAGTATATGAAGCTTGGGAGGACAGAGCCCTGCCTGAAGAGGAAGTGGCAGGAAATTGTTGCAACATGCTCCC--TACCATTCCTGAAGTGTTCTAGGTTGGGAAACATCTCA-GGCTCTTTTTT--------CTTTGATCATATTCTGATCAGGGGATAGGGTAGAATTTAATTTTATAG-AGTTCAAAACCTGGGTTAGAAAACTTAGTAAAA-GTGGAAAGAGAGGAGCAGGAGGCTCATTTTCAATGGTATCTAAAACTGGGCTCACAATCTCTTATTTTAGGCAGACTGCTCTGATGTGCACACAGCTAGTCCCTGGTAGTAAGCATGTGTGGTTTCCTACATCCCAC-TTCCTGTGTTG-----------------CTGCTATACAAATGAC--------------TCTTGAGTTTCTTACTCTTGGAGG--------CCTCATTCTGCAAACCTTT-------ATGTTACTAAGAAAACATGTCTGGTCCTTCATTGCTCCTCTAATGTCACTTAGGTTGGA s rn2.chr14 19389250 1002 + 107821284 ATTACCACTATTGAGTACCCGGCATACTAATAGCAGAGGTCAACTT--------CGATCAG---ATGTTTA----------CAA-ATGAGAGGTCTCCCAA----GTGCTATGAGTTACAAGGAAGGAGCAG-AG----CTGTGTCCAGTGTGGATGGAAAAGCAAAACTCCATCAGATAACGGGAACAGTTCTAGCCTCTAGATGCTGC-CACCGCCATTGTGCTTGACTTCCTGCTATCAAATGGGTCGGTTGGAAAAGCTGAGAA-GG--GTGTGACTCAGCA-----ATCCATGTGC-TTAGCTCG----CTCCCCACATTAAGCCTGGGGTGTAGGCAGCTGCACCGATACATGAGT-----CAAGAGCAGACATAGAAATTATATTTCACACCTGATGTATCATGAATTTTAAGGGATGATGTCAAAAATAGAATTCAGATGTAATTACATGCTTTT-----TGCTTCTTTTAGAGCCATTGTCTGCAATGGTAAG-----TCTCAGTGAGTGTCTGCTAGTCACCATGGAAGTCACTCTCCATCCCTTCTTTCTTTACCAGT--CACT-GAGAAGGAAGACT-----------------------TTCCTGCCCTAGTGTATGAGGCTTGGGAGGACAGAGCGC-GCCTGGAGAGGGAGCGGCAGT-ATTTGTTGCAGCATGCTCCC--TACCATTCCTGAA-CGTTCTGGGCTGGGAAGCATCTCA-GACTCTTTTTT--------CTTCCATCATAATCTGATCAGCGGATCGGGCAGAGTTCAATTTTTTTGCAGTCTAAAACCTGGGCTGGGAAACTTAGGAGAA-GTGGAAAGACAGGAGCAGGGGGCTCATTTTCAATGTTGTCCAAAACTGGGTTCCCAATCTCTTATTTTAGGCAGAGTGCTCTGATGTGTACACAGCTCGTCCCTGGTAGTAAGCATTCATGGTTTCCTACATCCCACTTTCCCATGTTA------------------TGATTTAGACATGAC--------------TCTTGTGTTTTTTCCTCTTGGAGG--------CCTCATTGTGCAAACCTTT-------ATGCTACTAAGGAAACAGGTCTGGTCCTTTGTTGTTTGTCTAATGTCACTTAGGTTGGA a score=60501.000000 s hg15.chr4_random 80743 432 + 1219494 TTAGGCA---------CTTCTTCTCTGTGGCTCCAGGGGCACCCTGTGCTTGGCCTTTTCATAGCACTTTTCACATGTGCTGTGGGGTTGAGTGTATC-----TATTTCACAGTATTGTTGTGGGATAATATATGTAAAGTAATTGAGCTTGGTCTAGG------GTTTTGTTATGGTGATTGTCTACTTGTCAGTCATGTCCATTGTAAGCTTTGAAGGAAGGGactgtatctttgataccttgcactgcacccaggac----atgaatattcagtaaaattctgatgaaagaatgaatGAATTGAATACAATGAATTAAAGAGAAGCAAAGGTAGAGGATGAGTATGCTTTTCTTGAACCATTTAAATCTATATAAATAATAAGCATACAATTCCTGATAATTTCAGTGAGAAAAATTCTTTATTTAAAATAGGCTAG-----ATTTTTTATACTAGAT s mm3.chr5_random 572848 416 + 1172935 TCAGAAG---------CATCTTCTCCGTGGTACCAGG----------ACCCGATCTTGTCATAGAACTTTGGTAATGTATAGTAGGCTTGAGTGCACTTTTA-TCTTTTGCAGTA---GTGTGAGATAATGTATGTACAGTAACTGAGCTTGCTTTAGACCATCTGTTTTGTTAC--TACTGTGATACCTATTAGTTGTGTCCATTTTAATTTTTGAAGGACGAGACCATAAACCTTATACCTTGCATAGTGCTTAGGACTTATGTAAATCTTCAGAGAACTTTGGAT-AAAATA----------------AATAAGTTAATGAGTGGCAAA--CAAGGGATGAGTATGCTTTTCTTT-ACTATTTAAATACATATAAATAATAAGCATACAATTCCTGACATTTTCAGTGAGAAAAATTCTTTATTTAAAACAGGCCAATTGCCCTTTCTTTTCCTAGat s rn2.chr14 19390443 421 + 107821284 TCAGAAGCATCTTCTCCATCTTCTCCATGGAACCAGG----------GCTTGGTCTTTGCATGGAAC-TTGGTAATGTGCAGTAGGCCTGAGTATATTTTTATTTTTTTGCAGTA---TTGTGAGATAATGTATGTACAGTAACTGAACTTGCCTTAGA----CTGTTTTGTTAT--TACTGTTCTACCTATCAG-TGTGTACATTCTACTTTTCGAAGGATGGGACCATAAACCTGATACCTTGCACAGTGCTTAGGACTTATGTAGATCTTCAGAGAACTTTGGATAAAAATA----------------AATCAATTAATGAATAGCAAA--CAAAGGATGAGTATGCTTTTCTTT-ACTATTTAAATACATATAAATAATAAGCATACAATTCCTGACATTTTCAGTGAGAAAAATTCTTTATTTAAAACAGGCCAATTGCCTTTTCTTTTCCTAGAT a score=6745.000000 s hg15.chr4_random 81175 110 + 1219494 TAAATAAAATACTCTATAAATGAGAATTTTAAATTAAATTATACCAAACCCAGTAATACCAGTCAGGAGTTTTCCACCAATCCCCATTTAATAAAGTTTAAATGAATTAG s mm3.chr5_random 573264 107 + 1172935 taaataaaatattctataaataagaattttaaatCCAAT-ATATGAAACC-AGTAATAGCAGTCAGG-GTTTTCCACCAATCACCATTTAATAAGGTTTAAATGAAATAC a score=197312.000000 s hg15.chr4_random 81285 1145 + 1219494 CTTAGAATTATGAGGATATTTGCCTTTGCTTAGAGAAAAAAGCAGTGCCATGTTTCCTGAATATAATAGTGTCATGCTGGTAAGAGAAATTCTATAATGCTTAAGACAGCTAAGAAAAAGTGATGATCAAATGCTGAGACCCTTAGAACCTTGCTCTGATGTTATTAATAGTGTTTCTAAATCACAGAGACAATTGACACATTTTATTTCAACAAGATATTGAAAGCAAGAAGGGGACCTACACTATTTCTAGCCACTTGCATTTATTAATATATGCTTAGCGCTTTTAATGCCTTTGCTGCAGAAGGGTAATAAGTGTTTTAGCAAAAAGGTACACTGTGGGGACAAAGCTGGGAAGCTTGTGCATACAGAAAGTAGCTAATATCTTAGAGCTGTCAGGGCTCTTGGAAATGCCATGCGTCATGCATCATCTCGGGCTCCTGGGCTTTGTTTCCTGGCATGGATGTTTGCAGAGAGTTTGGGGCCATCGTGGTATCCATGGTTGCTTCTTCCTGGAAATCCACGGATGTGGTCATGTCAGCATCGTAGGTCCTATAAACATCAGCTAATTCAGGGGTCATCAGTGGGTCAGCAGCTGCTGGGGTGACGCTGGGGAGTCCCTTCATCTTCCCTGAAGGGCTCCTTGGCAGGCCGGGAATGTCATCCTTAGGGAGAGCAAGGAGCCCTGCGTGGGGAGCAGGTTCTAGCTCTGTAAGGAAAGCTGGGTTTTCTAGATTGTCTGGGTTGGCCTCCGGCATAGGGGAGCCTTGTGCACCTCCTTCTTCGTTCTCAGGGCCTTTGGTGGCAGCCACTGGGGAGTCAAATTCCAGAGTGAAGTCACCGCCCATAGCTGGGTTGTGGGGCATTCCCTCAAAGCCGGGCCTCATGCCTCCAAATCCTGGAAACATGGCTCCATAGGCCATTGGGTCTTCTCTCCCGCCCTGGAAAAAAAAACATTCGTCAAAGATGCCATCATCACATGCTATTAACTATACCATGCAGCTATACCTGGTCACATTCACCAAGGATCTCTAAA---AAACTGGTGGAGAATAGGAAGTTGGCTGATTGATAGCTTTGTGTAAGCTCATTTCTCACTAAACTGGCTTTGAAACATAATGAAGAGGATTCTGCACTTATCTGGGTGG s mm3.chr5_random 573371 1107 + 1172935 TTTGGAATTCTGAAACTAAGTGCTTTTGTGTAGAGAAAGAAGCAGTGTCACATTTCCTGGGCATAATAATGTCATG-TAGTAAGAGAAATTTTATAATGCCTAAGACAGCTACATGCTA--TACCACCAAGTGCT--GACACTTAGA--CTTGCTCTGATATCATTGATAGTATTTCTAAGTCACGGAGACAGTTGATACATTTTATTTTGATAAG--AATGGAAGCAAGAA-GGGACCTACACTATTTCTAGCCACTTGTATTTATTAATATATGCTTAGTGCTCTTAACACCTTCACTGCGGAAGGATAGTAAGTGTTTTAGCAACAAGGTAC--TATGGGGACAAAGCTGGAAAGCTTGTGCATACACAAAGTAGCTGCTATGTCAAGGTTATCAGGGCTCTTGGAAACGCCATGCGTTGTG---CACCTGGGGCTGGTGCACTTTGTTTCCAGGTAGCAGTGGCTGCTGAGTGTCTGGGGACATGGTGATATCCATGGTTGCTTCTCCAT---CACCCAGGGGTGTGGTAACATCAGCACCATAGGTTTCATAAACTTCTGCTAATTCAGGGGTGATCAGTGGGTCTGCAGCTGCAGGGGTGACTCCAAGGAGTC------TTTGCCCTGCAGGACCCCTTGCCATACTGGGGATGTGGTCATTGGGGAAAGCAAGAAGTCCTGCATGGGCCCCAGGTGCCATTTGTGAAAGGAGAGCGGGGTTTTCCCGTTTGCCTGGGTTGGCCTCTTGCAGTGGAGAGCCTTCTGGACCTTCTCCT---TTTTCAGGGCCTTTGGTAACAGATACTGGGGAATCTACTTCCACAGTAAAGTCTCCTCCCTTGGGTGAATTCTGATTCAGTCTCCTAAGGGTTTGCCTGAAGCCTCCAAATCTTGGGAACAGAGTTCCATAGGCCATGGGACTTCCTCTTTCTCCCTGG-AAAACAAACGTCCATCAGTGACACAATTACTGTGTGTTATTCATT---CCATACAATTGTACATGATTATATTCATTGAGAAGCTATAAATACTAAC------ACAACAGCGAGTTGGCTGACT----GCTTTGTCGAAACACACTTCTTATAGAACTGGCTTTGAAGTATAGGGGAGAGGATTCTCCACTTATCTGGGCAG s rn2.chr14 19391325 1085 + 107821284 TTTGGAATTCTGAAACTAAGTGCTTTTGCGTAGAGAAAGAAGCGGTGTCACATTTCCTGGGCATAATAATGTCATG-TAGTAAGAGGAATTTTATGATGCCTAAGACAGCTACATGCTA--GATCACCAAGTGCT--GACACTCAGA--CTTGCTCTGACATCATCGATAGTATTTCTAAGTCACGGAGACAGTTGATATGTTTTATTTCGATAAG--AATGGAAGCAAGAA-GGGACCTACACTATTTCTAGGCACTTGTATTTATTAATACATGCTTAGTGCTCTTAATACCTTCGCTGTGGAAGGGTAGCAAGTGTTTTAGCAATAAGGTACGCTATGGGGACAAAGCTGAAAAGCTTGTGCATACATGAAGTAGCTGCTATGTCAAGGTTGTCAGGGCTCTTGGAAACGCCATGCATTGTG---CACCTGGGGCTGGTGCACTTTGTTTCCAGGCATCGGTGGCTGCTGAGTGTCTGGGGACATGGTGATATCCATGGTTGCTTCTCCAT---CCCCCAAGGGTGTGGTAACATCAGCACCATAGGTTTCATAAACTTCTGCTAATTCAGGGGTGATCAGTGGGTCTGCAGCTGCAGGGGTGACTCCGAGGAGTC------TTTGCCCTGCAGGACCCCTTGCCATGTTGGGGATGTGGTCATTGGGGAAAGCAAGAAGTCCTGCATGGGCCCCGGGGGCCATCTGTGAAAGGAGAGCCGGGTTTTCGCCCTTGTCTGGGCTGGCCTCTTGCAGTGGAGAGCCTTCTGGACCCTCTCCT---TTCTCAGGGCCTTTAGTTACAGACACTGGAGAATCTACTTCCACAGTAAAGTCTCCTCCCTTGGGTGAATTCTGATTCAGTCCCCTAAGGGTTTGCCTGAAGCCTCCATATCCTGGGAACAGAGTTCCGTAGGCCATGGGACTTCCTCTTTCTCCCTGG-AAAACAAACAT------GTGGCATAATTACTGTGTGCTATTCACT---CCATACAATCGTACATGATTACATTCTCTGAGAAGCTATGAATGTTAAC------ACCACAGTGAGTTAGCTGGCT----GCTCTG-----------------TAGAACCAGCTTTGAAAT-TAGGGGCAAGAATTCTTCTCTTATCTGGGTAG a score=347.000000 s hg15.chr4_random 82510 9 + 1219494 AAGAAAACA--- s mm3.chr5_random 574890 12 + 1172935 AAGAAAACAGTA a score=14381.000000 s hg15.chr4_random 82519 122 + 1219494 AGCAGTTGAAATGAGTACTACCATCACAAAACAAATAAGAACTGAAATTCATAACTGCATTTGTTGAGCGAGAA---TCTTGTCA--------ATGGCATTTTTCAGTGTCCCCCAAATGAAGTTCCATGTAC s mm3.chr5_random 574902 116 + 1172935 AGCAGTTGAAAAGGGCTCTATCATCATGAAACAAA----ACACAAGCTTCGTTA-TGCCTTGGTTGAGGAGGAATG-TCTGGGGA-------CATG----TTTTCAGTATCCCTCAAATATAGCTCTATGTAT s rn2.chr14 19392464 128 + 107821284 AGCAGTTGAAAAGGGCTCCACCATCATGAAACAAA----ATATGAGATCCATTA-TGCCCCGGTTGAGGAGGAATGTTCTGGGGGATCTTGCCATGACATTTTTTACTATCCCTTAAATATAGCTCTATGTAT a score=15719.000000 s hg15.chr4_random 82818 169 + 1219494 TTCCCTGGAGTAACTAAAATATTTTC-TTCTTGTGGACAAATAGAATACCAGCACTGACCATGTTTCTTTTTCTACCTTTGCTGCCA-GAAATATGGGGTCCAAAATCTTAGGCTGTTTGTAGCAATTGAGCAGG-CCTGTGTGA--CTTGCATA-TCTGTATTCTGATTTTCTT s mm3.chr7 70207942 170 + 134401573 TTCTTCTGAGCAACTGCTCTGTTTTT-ATCTTATGGGCACAGTGAATGCTACAACTGATTGTGTTTCTTTTTTTGCTCTGGTTGCTAGGAAACCCAGGG--CAAAACTGCAGACCTCCACTAGCGACTGCTTAGGACCTTTGCAACCCTTTTACAGTCTGCTTTC--ATTTTCTT s rn2.chr1 128804565 166 + 276301343 TTCTTCTGAGCAACTGCTCTGGTCTTAATCTTATGGGCACGGTAAATGCTACAAATGATTGTGTTTCCTTTTTTGGTCTGGTTGCTAGGAAACCCAGGG--CAAAACTGCAGCCCTCCACCGGCAGCTGCTTAGAACCTCTGCAAACCTTTAACA--CTGCTTTC--A---TCGT a score=27825.000000 s hg15.chr4_random 84127 200 + 1219494 GAGGGGTTAAATGGTCCCAGAAAGAACAAGAACTCTGTATGAACCACGTGTATCCTTTTGGTTTGAAGTGTTTATAGTTCA-----ATGACGGCCTTTCAAGGGGAGTTTTCTCCTCTGTTCATCTACAAGCAATGGGGCAAAACT-CTATGCTCAAGAATAGTCATCACCCAGAAATGAAAGATTACATAGGAAACATGATGAAA s mm3.chr5_random 575500 198 + 1172935 GGGGAGCTAAATAGTCCTAAAAGGCAAGAGATATCTGTATGAACCACACATCT-TTTTCACTTTGAAGGATTTGTGGTTCACTCTACTGACTCCTCTT---GGAAGGGTGACTCTTCTGTTCATATACGAGGAGTGGAACAAAAATCCTGGGCTCAAAAATAGCCACCACTCAGGAACAAATGAT----TAGAAAATGTGATGAAA s rn2.chr14 19394219 201 + 107821284 GGAAAGCTAAATAATCCTAAAAGGTATGAGATGTCTGTATGAACCACACATCT-TTTTTACTTTGAAGGACTTGCTGTTCACCATGCTGACCCCTCTTTGAGGAGAGGTGACCTTGCTCTTCACATCCCAGGAGTGGAACAAAAATCCTGGGCTCAAAAATGGCCACCACTCAGGAACAAATGAT----TAGAAAATGTGATGAAA a score=117975.000000 s hg15.chr4_random 84327 877 + 1219494 TCTTTGGATATTGCTTCAGAATTAAGCT-TAGTTTTTGGAGTGGAAAAATCTGAGTCCCATGCTCATTTGGCTACATTCATGGCAGACGTCTCTTGCAGCCAGTCATAAGTGACTGTTCTTCCCTGGCCACTATTTTAAGAAGAGTTAGAAGACATTACTCACTGCCACTTCTTCTGAACTCATGATGCCAAGTCTGGCAGGGGCATTCTGTTCAAAAAGAAATATTGCGTCAAATTACGAAC---CAGCTACC---------TTCTTATCTACTCAAGACAAAGTTAAAAGTTATTTAGTTTTCACTTAAACCTTAATATTAATGCTGTGTACAGAGGCAAAGTGGAGAGGTGAGTCATTATGGAATAAATGTAGTCAACTCGGATAATTCAGATCTAAAATTTGTTTTTTCTTTAATACCCTtgtgtgcgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtCTGGCCAAGATTATCCAAATAGG-AAGTTTGCCTCCTTAATATTTCAGT-ACTAATGTAGGTGTTCAGAGAATGTTTATTTGGAATCTCTTGTGTGAGACCTAGATTTTTGAATT-TTAGCTCTTAAGATAAAATTTAATTAAAAACAATACTTTTTATAGAATATGGACTTACCAATTGATTTGCTCCAAAAGGCACGTACAACATTCCTGGATAAAGCTAAATAAAATACAATCATTATCACAAAATGCATTTTCCAATGGAAAAACTTTTAAGTAAATTGCAAACAGAGATGTGGTATTAAAAA----AAACTTACTGGAGATTGTTTATTTTGTGGCATTGGTCCGTGAGAAATCAAACGGGCTATTTGGAAAATCTTTAAATGGTAGAAAACAGAATAAGTAATTCTCACAGGCACATCCCCAT-----AAC s mm3.chr5 61985015 833 - 149719773 TCTTTTGATACTGCTTCAGAATTGAGCTGTCAGTTTTAGAATAGAGGAATTGAAGTCTAATAATCCTTTAGGTTCTTTTACAGTCATTGCCTCCGGTAGACAG-------CAGCTGTTC-TCCCTGGCCATTGTTTTAAGAAGTGTTAGAAGGTGGTACTCACAGGCATTTCTTCTGAACTCATGAAGCCAATTCTGGCAGGAGCATTCTGTTC-AAAAGAAACAGTGCGTCACTGTATGAACTC-AAGCCATC-----------------TACTCAAGACAATATCAAAAGCCACTCAGTATCCTCTTAGGACTCAA---TAGCTCTGTGTCCAGAG-CAGAGTACAGAGTTGACT-ATTATTGAGTAAATAGAGCCAATTTAA------CAGATTTAAAATTAACCTTTTCTTTAA------------------------------TGTGATTGTGTTTGTGTCTGTTTGGAATTATGCAAATAGGAAAGTGTGCCACTTTACTATGTAAATCATGACTGTAGGTATTTGTGGATTATATATTTGGAATATCTTGTGTTAGGTATGGATTCTACAGTTTTTAGCCCTCAAGATGCTATTGATTTTTAACTGCTGCTTTTGACAGAATGTGGACTTACCAATTGGTTTGCTCCATAAGACATGTAAAACATTCCTGGGTAAAACTGAGCAGAACAAAATAGTTATAAAAAAGTGAATCTCCCCAAGATCAACCTTTTAAGT-AGTTTCAAACACAGATGTGGAAGTAGAAAGCAGACACTTACAGCGGATGCTTTGTTGTGTGCCATTGGTCCCCGAGATATTGAACGGGCGATCTGGAACACCTTTAAGAGGTGGAAAGCAGAAAAGGCAGTCAAAACAGGCAAACCTCCACTGACAGAC s rn2.chr14 19394553 855 + 107821284 TCCTTTGAAACTGCTTTGGAATTGAGCTGTCAGTTTTGAAGTAGAGCAATTGAGGTCTACTAATCCTT-AGGTTCCTC-ATGGCCATTGCCTCCTGCAGACAAGAGT-CTTAGCTGTTC-TCCCTGGA-ATTGTTTTAAGAAGGGTCAGCAGGTAGTACTCACAGGCATTTCTTCTGAACTCATGAAGCCGATTCTGGCAGGAGCATTCTGTTC-AAAAGAAACAGTGCGTCACTATATGACCTCTCAGCCATCGGTGCCTTTTTTTTATCTACTCAAGACAACATCAAAAGTCACTTTGTGTTCCCTTAAGACTCAA---CAGTGCTGTGTCCAGAGGCAGAGTACAGAGCTGACTGATTATTGAGTAAATAGGGCCAATTTAA------CTGATTTAAAATCAACCTTTTCTTTAC------------------------------TGCAATCATGTGTGTGTGTGTCTAAAATTATGCAAATAGAAAAGTGTGCCACTTTACTATTTAAATCGCAACTGTAGGTATTTAGGAAATATATATTTGGAGTGTCTTGTGTTACATATGGATTCTATAATTCTTAGCCCTCAAGATGATAATGATTTCTGACTGCTGTTTTT-ACAGAATATGGACTTACCAATTGGTTTGCTCCATAAGACATGTAAAACATTCCTGGGTAAAACTGAGCAGAACAAAATAGTTAT-AAAAGGTGAAGCTCCCCAAGATGAACCTTTTAAGTAAGTTTTAGGCACAGATGTGGAAGTGGAAAGCAGGCACTTACAGTGGGTACTTTGTTGTGTGCCATTGGTCCCCGAGACAGCGAATGGGCGATCTGGAACACCTTTAAGGGGTGGGAAGCAGAAGACGCAGTCAACACTGGCAAACCTCTGCTGAGGGAC a score=50549.000000 s hg15.chr4_random 85207 981 + 1219494 AATTTTTGAGGTATATGAAACACATT-TTCAGATGGATTAGTATAGAAAATAAGTATTTAATATTTAAGAGAACAAAGGAACCCATTATACTTCATATTCATGGATAAATGGGACAATGAAAAAATTCACTCTTATTTTTTGAAATATAGAGACAGTTTTTGCAAGACAGTGTCTCATTGAGATCTGTACTTACTGTTGAACCTTGTGGATCAGCAAAATCCAATCCTGGGAGCTATATTACAGATAAATATTAAAATTATCAGTCAAAAAAGGAACAAAATAGATAAATGCAAATAAAAGATAGACAAAGTGAACaaataaaaataaaaataaaaaATAGAAGTGTCTCACTGAGATCTGTACTTACTGATGGACCTTGTGGATCAGGAAAATCCATTCCTGGGAGCTATATTGtagataaatattaaaattatcagtaaaaaatgaacaaagtagttaaatacaaataaaaataaaaaagtgaacaaataaaaattaaaaaataaaATACAGAAAGTGTCTCATTGAGATCTGTACTTACTGATGGACCTTGTGGATCAGCAAAATCTACTCCTGGGAGCTATATCACAGATAAATATTAAAATTATCAGTCAAAAAATAAACAAAATAGACAAAGTGACATTAAAAATAAAAAAATAGACAAAGTGAACTGATCACATCCTTATCTTGTTTACAATTACAATAAAACAATTAAAATGAGTTTCATTATTTTACTTTCTTTTAGTGTTTTGGGAGGTATGACCCAAGAGTTTGCAATGGTCTTTTACTAACATTACTCAAATGTACCTGCAGGGAGATGAGGCACATCTATCATGGCTTTGCTATCTCTtgcagattagaaagtaatgaattttggaactggaacatacctggttggtttgaaccctggctctgccacttaatttttgtgtactcctgggcaaattttgtaacttctcaaaatctgtcttcctttcttta s mm3.chr5_random 577024 576 + 1172935 ACTTTTAAGAGTTCCAGGAACACATTTTTTTGATTGATTAGTGTGAAAACTTAGCACTTAATATTTAGAA----AAAGAAACTCA--------------------------------------------------------GAAATAC-----------------------------------TCTATAC------------------------------------------------CTATAGGTAAATA---------------AGAAAAGAAGAAAATTCATTCAAAATCTTTGAAATATAGACA-----------------------------------------CACACATATATATATTTTC-------------------------TCCA-------------------------------------------------------------------------------------------------------------------GGATAGAACCTTATTGAAATCTGTACTTACGGTTGGAAATTGTGGATCAGCAAAATCCATTATTGGTACCTGTGTCATGAGGAAATATTAAAACTGTCACTCAAAACAGACA---------------------------------------------AACTGAGTACACC----TCTAGTTTGTGATTATAATAGAGCAGTTTAAG-ATGTCTCTCTGTCTTAT--TCTCTAAGTCTT------GGGATAACCTATTCTTTTAAAGTTGTCTTATATTGACATGGCTCCAGTGAA-TGACAGGGAGATGAG-AATGTCTATCTTGGGTTTGTTCTACATTATAGAGggaatggtaatgaggtttggaattggcacatacttgagtggtttcaatttttactcggccac-------tagtgtaatccttggaaaactttgtagcctctcaaagcttaggtttatttattta s rn2.chr14 19395406 562 + 107821284 ACGTT-AAGAGCTCCAGAAGCACATTGTTTTGATTGATTAGTGTGAAAACTTAGTACTTAATATTTATAA----AAAGAAACTCA--------------------------------------------------------GAAATAC-----------------------------------TCTACAC------------------------------------------------CTATAGGTAAATG---------------AGAAAAGGAGAAAATTCATTCAAACTCTTTGAAATACAGGCA-----------------------------------------TACA----------TTTTC-------------------------TCCA-------------------------------------------------------------------------------------------------------------------AGAAAGAACCTTATTGAAATCTGTACTTACTGTTGGGAATTGTGGATCGGCAAAATCCATTATTGGTACCTGTGCCATGAGGAAATATTAAAACTGTCACTCAAAACACACA---------------------------------------------AACTGAGTATACC----TCTTGTTTGTGATTATAATAGAGCAGTTTAAG-ATGTCCCTCTGCCCTAT---CTCTAAGTCTC------GGGATAATCTATGCTTCGACAGCTGTCTTGTAGTGACATGGCTCAAGTGAACTGACAGGGAGATGGGGAATGTCTGTCCTGGGTTTGCTCTACATTGTAGAGTCAGTGATAGTgaggtttggagttggcacatacttgagtggtttcaattttggctctaccat-------tagtgtaatccttggagaattttgtagcctctcAAAgtttaggtttattta---- a score=213909.000000 s hg15.chr4_random 86188 1884 + 1219494 aaaaggctgataatatatatttttataggattgtaggcagggtgatatgggggaatgataaatgc---ccacaacatactg---gttacttggtacCTTCATTTTTTTTTTAATCCATTACACTTTTCTCTACATTATTACAAGATACTTTTTGCATAGTGGTCACCTCTTTGTCAGAGAGATAATAATGCAAAATCCTACTTGTTATGCTGAGGGATCAATCACTTTT-TTCAGTTTTTCCAATACCAAAAAAGACCAGTGATAGGAAACCTGGACTTCTCTGGGGTTTTATTCTATTTCCTATGGGAGTTTTCATCTTTCGCAACTAAGAAACCCAGTTTTATAGGCACAGTATCTTTTAGAATCCATGCCCTGTCTCTGATGGCAAAAGATA-GGAATGGATATTTACGTTTTACTCAAAAAATAAATCTCAGATGTGGAAGACTGATTAAGAATATATTTATATCACGTATTATGCCTGAAGGCTACGATTATTTAAAAGTGCCCTGCAAATTCG-TTTTCTTCTATTAGGTTAGCTGGTGATTCTGATCTGACTTCAAGAGA------------------AAGGAAGTACCTCAGGCTTTGGTGGCTTATCTGATGGTGCCACCTGCTGCTGAACCAGAG---GCAGTTCTCCTTCCTGCAAGGGCAGATGTCCCAGGTGAATTGGAGGCTGAAGTGCTTCTTTCAGTGCTGTGGCCTGGTTGGTGGTTGCAGCAGCAGACTGGAGAAAAGGTTTCAGTCCTGGCTGTTGAGGCTTCAAGGATGGCTGTGATGGGAGAGGTGGGGGATGCACAGGCAAAGAATATTCATACTGCAGAGAAATTTGAAAAGAGTGTTAGGAAGGGATGGCTCATTAAACAACGGTGCCTAGAATTTCTAAACAAAGGGGCTTGGGGCGCTTTCTATCTGGAAGGGAGGCTAGGAGACTTGTCTTGAAGTTGAGTTTACATAGCAAGCACCAGTTAGTGTT----AATGTTGTTTGGGGAGGTCTTGTGTGTGCCTCCC---CTACCTCCTTTGGGACCACCATTGCTCGTAAAGGTGAAGCTACA-----TGAACCTCCTGGTAGGATGAGTCATGTccttctctaagttcccatagctgtctgtatgtatctgtatctttattttaccactttctcactggatgataattatttgtta----------------taaatctt------------tgtcccccagt----------caacggagag-------------------------------------------------------------------------------------------agaatgatatgt-------------------------------------tttgt------------------------------------------ttttctttatagcccg----tgtaca---taacatagctcctaacaagtgcctggcccatggtgggtgcctaatatatttttcgagttaatgaaAGGATAAAGGGTAATTAATTAAAATGCCAATCAAATTCTTGCATCATGGAGTCCACTTTGGAAACAATTAAGTTAAG-AAACAGTCACCATTAACATAATTTAT-TGTTCTACTGAATGTGACCTCGTGGTAATGCTCCTGCTGTGGAAGACCGCCTGGAACTAAAATTCCCTGTTAAATCTTGGTTCTGAGTCCATATATTAAACGAAAAAATTCCCCGTTAAAATCACCATGTTTTGTTACTTCTTGTAGAAATTACTTTTGGTGAATGGCTCCCTATTGTTTGTAGATTGATTGTAAACTCCTCAGACCAGCAAGGAAGTCTCGCAACAATTTGGGGCTCTGCTTTGCCTCTCCAGCCATCACCCCTCTCTGAGCTCACGCAGTATTCATTACTCACATGTCACAATTCAGCACTTTGAAATATGTTGTCTTGTCCTATCTGAATCAGATAAGATGAAATTTCACAATCCTTGGAGCCATTCTTAAATGTCTTCGCTTTTA-----------CTACCAAACCACAATTTGGTTTATGTATTTATTAGGCACCTAATCAATAATGGTTAACAGATTGATATATTTATTGACTTCTGTAGGGTTCATGATGt s mm3.chr5_random 577762 1889 + 1172935 AAAGGGTTCCTAATGT-TTTCTTTATAGG-GTGTAGTCAGGATGATATGAAGGAATATTAAATGCATGCTACATAGTATTGAGAGTTACATAGCACCTTCCCTTTTCT----GTCCATTGTTCTCTTCCTTACAATATTACAAGGTAA-TTTTGCATAGCTG------------------------------------TATTTTATCTGCAGAGGACACAATCACTGTACTATACTTTTTCCAACACTGAAAACCCCCA--GCTGATGAGCCTGGACTTCTCTGAGG---TGTCCTATTCCTAAGGAATGGTCTCATT--------------AAGCCAAGGTTAGAGATGCAG-ATCTTTTGCAACCTG----ACATCTCTGATGGCAAAAGATT-GAAATAGATATTTATGT----CTCATGAAA---------------GAATATTAATAAAGTGTTCATTTTTTTAGCATGTTAGGTCTGAGAGATGTGATTATTTAAGTATGCCCTACCAGTTGGTTTTTGTTTCATTGTGTTAGTGGGTGATCCTGATCTGATTTTAAAGAAGTAACTTAGGTGGGCTCCAAAGAATTACCTCAGGTGTTGGTGGGTTTTCGGATGGTGCCACCTGCGGCTCATCTGGTGCTATCAGCTCTCCTTCCTGCAAGGGCAGCTGTCCAGGGTGCATTGGAGGCTGAGGCCCTGGCTTCTGGGGTGTGACCTGGACACCGGTTGCAGCAGTGGGCTGGAGGAAGGGTTTCAGTCCTGGCTGGTGAGGCTGCAAGGATGGCTGTGATGGGAGAGGTGGGGGATGCACAGGCAAAGAATATTCATACTGTAGAGAAATTTGAAAAGAATGTCAGAAAGAGATGGTTCATTGAACCACAGTGCCTAGAATTTCTACAGCAAAGTACTTGGAG-GCTTGCTGTTTGGAAGGGAG----------TAGTCTTAAAGCAGAGTTTACACAG-GAGGAGAGGTGACACTTCAGAGAAAGTATTTGAGAAAGTTTTAAACATACTTACCTCTCCACCTTTGTTGGGACCATTGTTTCATGGGGTGCGGAAATCTCCACACCTGCACTCTTTGTTGGTGTGACTCATTCCCTCTGGGTAATTACCA---CTATCTGTATATATC-------TTATCTCATCACTTTCTTactggcttatatgaatttgtcaatgggagaggaagtgcttggtcttgcttggactagatatcccagggttg--------ccaaggggggcttcctcttttctgagaaggggagggagtaattgtggaagggatttgtaagggtgggacagggaacagagtagggagggg-cacagcaattgggatgtaatgtggatagaaaaataaaTTACGAGCAAAAAAAAAAAAGAATTGT--------------------CTGACAGA------------------TTTTATACCTTGGTATTTCACAAATTACTATTGCTACTAATAAACACCTGATATATGAAGGGTACTTACAATATTTTGTGATTTATTAAAAGGA-----------TAGTTAAAATACTTAT----ATGTTTCATCAT-AAATCTATTTTGGAAGCAATCAAGTGAAGTGAATAA-------TAACACAATTCATATGGTC-----ATTGTGGCCTTGTAG--ATAATGCTGTTATGCAAGTCCATGTAGAATTAAGAGTAA-TATTAA--------------------------------------------------ACTATTGTGGGTTTTGTTTTTTACCAATTACTT---GTGATTGGCTGCATATTATCTATATGTTAACTGCATACTCCTGGAATGGGTATGGAAGTCTCATATTAACTT--GGCTCTGCCTTTTATCTTCAGCCATTGCTCATGTGTCAGCTTCTATGCCATCCATTACTTCTACTTCACTATT-AGCACCTTGAAATA--------TGTCCCATCAG----------TTGGAAATCCCATGAGCCTTTGAGCCATTCTAACATGTCCTTATTTTCGTGCCCCCCTCCCCCCCAGACCACAGTTTGGATAATATGCTTATTAGGAATCTAATTAATAATAGTTGACAGATTAATA----TATTGGTTCCTGTTTGGCTCATTGTGT s rn2.chr14 19396100 1896 + 107821284 aaagg--ttcatACGT-TCTATTTACAGG-CTGTAGGCAGGATGCTATGAGGGAACAGTGAATGC-TGCCGCACCGTGTTTAGAGTTACACAGCACCTTACTTTTTCT----GTCCATTGCTCTTTTCCTTACACTATTGCAAGGTAA-TTTTGCATAGCTG------------------------------------CATTTTATCTGCAGAGGACACAATCACTGTA-TATGCTACTACCAGCCCTGAAAACCCCCA--GGTAGCGAACCTGGACTGCTCTGAGC---TGTCCTATTCCCAAGGAATGGTCTCAGT--------------AAGCCAAGTTTAGAGATGCAG-ATCTTTTGGAATCTG----CCATCTCTGATCACAAAAGATTAGATATGAATATTTATGT----CTCATAAAA---------------GAATATTAATAAAGTGTTCATTTTTT-AGCATGTTAGGCCTAAGAGATGTGATTATTTAAATACGTCCTGCCAGTTGTTTTTTCTTTCATTGCGTTAGTGGGTGATTCTGAACTGACTTTAAAGATGTACCTCACATGGGCTTCAAAGAATTACCTCGGGTGTTGGTGGGTTCTCTGATGGCGCCACCTGTGGCTCATCTGGTGCTATCAGCTCTCCTTCCTGCAAGGGCAGCTGTCCAGGGTGCATTGGAGGATGAGGCCCTGGCTTCTGGGGTGTGACCTGGACACCGGTTGCAGCAGTGGGCTGGAGGAAGGGTTTCAGTCCTGGCTGGTGAGGCTGCAAGGATGGCTGTGATGGGAGAGGTGGGGGATGCACAGGCAAAGAATATTCATACTGTAGAGAAATTTGAAAAGAATGTCAGAAAGAGACGGTTCATTGAACCATGGTGCCTAGAATTTTCACAGCCAAGTACTTGGAG-GCTTGCTGTTTGGAAAGGAG----------TAGTCTTGAAGCAGAGTTTACACAG-GAGCAGAGGCCATACTTCAGAGGAAGTACTTAGGAGAGTTTTAAACATACTTACCCTTCTACCTTTGTTGGGACCATTGTTTCTTGGGG------------------TGCACTCTCTCGTGGAGTGACTCATCCCCTTTGGGTAACCCCCA---TTACCTGTATGTATC------TTTATTTCACCACGTTCTTGCTGGATTATAGGAATTTGtcaatcagagaggaggtacttagtcttgctgggactatatgtcccagggtggggtggtatccaagggggg-ttccccttttctgagaagggg-----gtaatggtgggagggatttttaagggcgttactgggaacagaggatgtaggggacatggtgattaggatgtaatgtgggtaagaaaataaaTTACAAGCCAAAATAAAAGAT-ATTGTCAAAAAACGTCCTAAGTCAACTGACAGAGAACAATCTCTCTTTTATCTTCATACCTTGATACCTCACAGATTAATATTGCTACTAATAAGCACTTGTTGTATGATGGATATTCACTATATTTTGTGATTTAATAAAAATA-----------TAGCTAAAATGTTTA-----ATGTTTCATCAT-AAATATGCTTTGGAAGCAATCAAGTGAAAGGAATAACTACTCCTAACATAATTCATATGGTC-----AGTTTGGCCTTGTAG--ATAATACTGTTATACA-----ATGTAGAATTAAGACTAACTGTTAA--------------------------------------------------ACTGTTGTGGGTTGT-TTTTAAATAAATTACTT---GTGATTGGCTGCATACTATCTGTAGGTTAATTGTATACTCCTGGAACTGGTATAGAAGCCTCATATTAACTT--GGCTCTGTTTTTCATGTTCAGCCATTGCCCATGTGTCAGCTCCTATAGCGTCCATTACTTCTACCTCA--------CACCTTGAAATA--------TGTCCCATCAG---------AGTGGAAATTTCATGAGCTTTTGAGCCATTCTAACATGTCCTTATTTTCA-----------CCTCCAAACCACAGTTTAGATAATATGCTTAGTAGGAAACTACTTAATAATAGTTGACAGATTAATATATTTATTGTTTCCTGTTGGGCTCATGGTGT a score=71162.000000 s hg15.chr4_random 88392 527 + 1219494 TTTTAACCAGGATTATTGTCATCATT----------------------------------------------------TGAAATCAGCCTTTGAGGAATTATTTAGGAAATCTTGATTCAAATGAAAATTGTCCAGGATGTAGCCTGCTTTGATTTTCGAG---G---ATTGT--TTACTGATATCTTTAATATAGGTCTCATATTTTGGAGGCTGTATCTTCCtattttaaataaatatgcaaatagttttaaatttaaaaatatttCTTAAGCGCTAAAAGCAGTTATAGGCTTCGATTTATTTGGCACGAGAATAATTTTTTGTTAATGCTAGGACTTGGCTGTTTCTAATATATCATAACTTAAAGAAGGCAAGTAAGAAGAGGTTTTAAAGCCTGAGGTTTCAAACATATTGA--TGCTATTCACTCACCTGTTGAGTTTCATGTTCTCTTGGCCTCATCCATGGAAGAGAGGAATGTGGTGGGAGGAGACCGTGCATCCACAAAGAATTAAATGATTTTCCAAAGCCGTATCTAGAATACTAAAGACATGGATAAAAAAAGACATGCTTATATTTAAATGTTA s mm3.chr5_random 579651 493 + 1172935 TTTCAATCAGGATGATTATTGTCATT----------------------------------------------------TGAAATTAGTCTTTAGGTAA----TTAGGAAATTTTGATTAAAATGAAAGTTATCCAGACTAGAGTCTGTTTTTATTTTTGAG---GTTTATTGTTATTCCTGATATCTTTATTGTAGGTCTCTTCTTTCAGAGG----------CTATTTGaaataaat-tacaaa-----tttaaaataaaaatattCCCTAAG---TAACAGGAGTTATAGGACTTGATTTATTTGGTATTAGGGGAGTTTTTGGTCAAT--TACTAATTTGTGTTTGCTGCTAT--------TGTAATAACAAAAGTAGGAAAAAGTCTTAAACCTTGAG--TTTGAACACATGGA--TGCAATTAGCTTACCTGCTGGGTTTCATGTTCCCTTGGTCCTATCCATGGGAAAGAGTTATGCGGTGGGAGAAGTCCGTGCAACCATAAACTATTAAGTGCTTTTCCAAAGCCAAGTCTAGAATACT---GACAGAGACAAAGAAAG-CATACATACATTTCAGGATTG s rn2.chr14 19397996 551 + 107821284 TTTCAGTCTAGATGATTATTGTCATTTGAAATTACTCTTTTTTTTTCTTTTCTACCACTGAACTAAATCCCCAACCCCTGAAATTACTCTTTAGGTAATTATTTAGGAAACTTTTTTTAAAATGAAAGTAATCCAGTGTCTAGTCTGTTTTGATTTTTGAGGTTGTTCATTGTGATTCCTGATATTTTTATT----GTCTCTTATTTCAGAGG----------CTTTTTGAAATGAATGTGCAAA-----TTCAAAATAAAAATATTCCCTATA---TAACAGGAGTTATAGGAGTTGATTTGTTTGGTATTAGGGGAAATTTTGGCCAAT--TATTAATTTGTACTTGCTGGTAT--------TTTAAGAACAAAAGTAGGAAAAGATCTTGAACCTTGAG--TTTGAACACATGGAATTGTGATTAGCTTACCTGTTGGGTTTCATGTTCCCTTGGTCCTATCCATGGGAAAGAATTATGCGGTGGGAGGAGTCCATGCAACCATAAACTATTAAGTGCTTTTCCAAAGCCAAGTCTAGAATACT---GGCAGAGAGAAAGAAAG-CATACATATGTTTCAGGATCA a score=6491.000000 s hg15.chr4_random 89264 73 + 1219494 TAAAAAATCAACACATAGCATAAATATAGCAAAAGCAAAAGTGATGTTGGTTAATTTAAAATGGATAGGTATg s mm3.chr5_random 580144 56 + 1172935 TGAGATAGCAAC-----------------CAAAAGCAAAAGTAATTCAGGTTTGTGTGGAATGGGTAAGCCAA s rn2.chr14 19398547 56 + 107821284 TAAGACAGCAGC-----------------CAAAAGCAAACATCATGCTGGTTTATGTAGAATGGGTAAGCCAG a score=14374.000000 s hg15.chr4_random 89647 180 + 1219494 ----------TAAGTAAATCAAATGGGTAGGTGAACTCTTCCTTTCAATGAACTTAAATTTCGTTTTGAGCTAGTCTGCAATATTTGCATAAATTGTTTGAGATTTAGCTTTTTAAGCACTTGTGTTTTGTGCCACATAATAAAATTAATAATGCAGGAAAAGATTCTTTTCT---TAACTCAA--TAAAATTCA s mm3.chr5_random 580200 177 + 1172935 TTCTCTCTTCCAACAAAATTA---------------TCTCTCTTCCAACAAAATTAAATTATGTTCTGGGCATGTC-ACAATATACCATAAACTTGTTGGTGATTTATCATTCTAGAAATTTCTGTTTGGGACAACTTAACAAAATTATTAGTGTAATAAGTAATTTTATTTTACTTAAAGTAA--CAATGTATA s rn2.chr14 19398603 158 + 107821284 -----------------------------------TTCTCTTTTCCAACGCAATTAAATTATGTTCTGGGGGTGCC-ACAATATACTATGAAGTTGTTTGTGATTTAGCACTCTAGGAATTTCTGTTTGGAGCCATTTAACAAAATTATTAGTGTAGTAAAGGATTTTGTTTT-TGTAAGGAAACTCAATGCATA a score=5849.000000 s hg15.chr4_random 89827 36 + 1219494 ATATTGTTTTTGTTTTTCCCTGTCAC---------------------TGTATCTTAT s mm3.chr5_random 580486 57 + 1172935 ATATTATTTCTACTTTCATTTGCCAGCACATATTAATATTACTAAAATGTGTCTTTt s rn2.chr14 19398868 57 + 107821284 acaTTGTTTCTACTTTCACCTGCCACCACATTTTAATATTACCAAAATGTGTCTTTt a score=614.000000 s hg15.chr4_random 89865 15 + 1219494 TGTTTTAGGC--TCTCA s mm3.chr5_random 580813 17 + 1172935 TGTTTAAGGCTTTCTTA a score=68488.000000 s hg15.chr4_random 89880 529 + 1219494 TTTACTTCTTGGTTCTTCCAATCTTTA-GTATATTGTCTATTCATAAATAAATTTGATGAATTATAATGCTGCTGCTAATATTAACACTACC-------ACCACCATGAATACTTGCAA-------TAAGAAA---------------TATGATTACCTGAGAAAGTGTGTTTAATCTCTGCAGACTTCCCAACTGTCTCATTGTCTATCAAGAAAAAAAA-GTGGGTTACTGTTTATCGCATATGCTG------TGTTTGACACAACTGATTTCTCATGATATTTGACATTATCAACACAAAGTTTGGTGTGAATCAATTT-AATAAAATGAAAGTAGACACAAATCATCACTGAAAGGTGGAAATATTAAATTTGGTTCTGCCATTGTTATTATTATTGCTATTAAAATAATGCAGTTGCTTTTATCATTAATTAAAGGAGAAAAAGTATTATTTAAGTGGAGGTTACATTGAAACATGGGAAAATAGCTCATTCCATTGAAATATAAGTGTAATTGTGAGGACTTTGCTTCATTGACTCTTT------CTCCCCATTTAATTTACTTTGC s mm3.chr5_random 580830 551 + 1172935 ATCACTCATTTCTTCTCTCAGTGTTTAGGTAT-TTACCTATTAATAAGTAAATTCTAGAAACTATAGTACTGTTGCTGTCATAACTACAAACTATCAATGTTGTAATAAATATTTTAAAAAGTGTTTATGAAGATCTCATTCATCTCGTATAGTTACCTGAGAAAGTGCGTTGAGTCCCTGCAAGCTTCCCAACTGTCTCATTGTCTAT----AAGAAAAA-GTAGGTTAATGCTC-TAACATATGTTAGATGTCCGTTTGACACAACTGAGTTCTCATGACATTTAA---TAGCAATACAAGTCTTGGGGTAAGGCAACTTGAATAGAGCTAAAGTAGACACAAATTGTTACGGAAAGAAAGAAATGTAAAATGTAGCTTTGCCAT--GT-------TCAGTCTGAAAACAGTACACTTGCTTTTGTCACTGATTAAATGGGAAAA--TACTAGTTAATCTGGGGTCACACTGAGACATAGGAAAACAGTCTATTCAAATACAATACACGGACAGTTGTAAGACTATTGCTTTATCAGCCCGTTCTTTT-TCCTTCACTTAAATTTCTTTtt s rn2.chr14 19399060 543 + 107821284 atcactcagatcttcTCTCAGTGTTTCTGTAT-TTACCCATTAATAAGTAAATGCTAGAAATTACTGTACTGTTGCTCTCATAACTCCAACCTATGaatattataataaatatttaaaacatt--ttatGAAGATCTCATTCATCTCCTATAGTTACCTGAGAAAGTGCGTTGAGCCCCTGCAAGCTTCCCAACTGTCTCATTGTCTAT----AAAAAAAAAGTGGGTTAATGTTC-TAACATATGTTAGATGTATGTTTGACACAACTGAGTTCTATGGACATTTAA---TAACAATACAAATCTTGGGGCAAGTCAACTTGAATAGAGCTAAAGTAGACACAAATTATTGCTGAAAGAAAGTAATGTAAAATGTATTTTTGCTACTAAT-------GTGGTCTGAAAACAGTAGGCTTGCTTTTGCCATTGATTAGATGGGAA------------AATCTGGTATCACATTGAGACATAGGAAAATAGCTCATTCAAATCCAGTAGGCAGACAGTTGTGAGAATGTTGCTTTATCAGCCCCTTCTTTTCCCCCTCACTTAAATTATTTTTT a score=29428.000000 s hg15.chr4_random 90602 333 + 1219494 GGGAAGAGATTTAGAATGCT--TTGGATTGAGTTTAAGCTAAAAAGTGAGAAAAAAA--CCCTCAGCGAAATTAGCTTCCATGTGAAATAAGCGTCTAGCTCAAATAGGTATTGACTGCCCCCAGCTTACCATGACACATGGAAATTTCACAAGACCTTGTGAAAAATTTATAATCTTATAAATATCTTTCTATATATAACTGTCAATATTTTTCATTGACATGACCAAAATTTCTGTTTTGCTGGAGTTTTCTAAA-CAGAATATATATTA--CATGAGAACTGCAATAAGACAAATACACTGTACAACTTATGCAGGAAGTATCATAGTACAATGTTA s mm3.chr5 61990747 293 - 149719773 -gAAA-------AGAATGTTGCTTGTATTGAATTTGAGCTAAAAGCTGAGAGAAAAACCACCTAAATGAAATTAGCCTCTATGTGAAATAACTATCTGGCCCACACATGTACTGATTGCACTCAGAT--------------GAAATCTTGCCTGACCTTGTGAAAAACTGTGAAATTTAT--CTGTGTTTCCAT---TAGC--------TTCTTCATTAT-AAAATC----TTCCTATTTCACCATGGTTTTCAAAAACAAAAAATGCATTATTTATGGGATCTGCAGTTAAAAAAA-------AGCAACCTGTACAGGAGCAATTATAAAGTCATGTTA s rn2.chr14 19399863 271 + 107821284 GGAAA-------AGATTGTTGCTTGTATTGAATTTGAGCTAAAAGCTGAGAGAGAAAACCCCTAAATGAAGTT-------------------TGTCTGGCCCACATATGTACTGATTGTACTCAGAT--------------GAAATCTTGCCTGACC-TATGAGAAACTGTGATATTTAT--CTGTGTTTCCAT---TAGC--------TTCTTCATTATAAAAATC----TTCCTATTT-ACTGTGGTTTTCTAAA--TAAAAATGCATTATTTATAGGATCTTCAGTAAAACAAA-------TGCAGCCTGTACAGGAGCAA-TATAAAATAATATTA a score=1795.000000 s hg15.chr4_random 90935 101 + 1219494 ATGTTATTTACCAGAC----TTATAAAAAATTAAATTTTGTACAGGTACAAAATTTTTCATGAGAACTTTATCATGTAAGATAGTATAAGGAGCAGGATTAAAAA s mm3.chr5 61991040 100 - 149719773 CTGATACTGATAGCACTTTGTTTTAGAAAGCTAAAGTGTGTCCAAGTGT-GTTTATGTCATGAG-ACTTTATCATCTAAGA---TATAAGCAACAGAACTAAGTG a score=106534.000000 s hg15.chr4_random 91036 928 + 1219494 TAAACTATTTGTGAGTATG-GAGCAATGTATTTTAATTAAGGTAGTAATTT---TATTAATGTGCATATTATATATAAGG-------------CATTAAATACTAATATTGCTTTGGTTTGCATAGAAACAATGTTCTAAAACTTAAAACACCTGAGAGTTTAAAACTGCAGTAGAATTATAAGACAAAGCTCTAGTAAATGTCAT-AACTTTTCTAGCACTCCTCAGGATAACAGCCACAAACTTCTGG-CTAGGAAAACTGAGAAGCACACGATTATATTTCTCCTGTACCACAAATATACCAATGTAAAGTT------------------------AATATGTTAAAAA-----------------------TTCTGACAATACATACCTCAAGGCTCAAACTAGCCATACCCGGTGTT---------------CCAGATTGCTGAGGAAAGAACTGAATGAAAATAAGAATAATTTTGAGTCTTATTGGTACAAAACTTCCTTCAATGCCCATTGGGCGTAGGATATTGCTCCAGTACATACGGGCTACCTGAGAGGCCACC----ATTTTGGTTTATTATGCAAATGACTTGAGTGCTTGGGCAGAATGAAGAAGAGCATAAGTTATTTGGGAGAATCAACATAGTATTTGATAATTTTGCTCCCACCTGCATCATCTATCCTTTGTCTG--CATCTTAATGCTTCATTGCTTTAAAAGCAAAATATGATTTAAAGTTA--CACACAAGGAGAAATAGAATAAAGCAACAAAATAGAAAACTACTAGTACTTTATTTTCTTTAAAAATTACCACAGAAAAAAGTAAAGGGGACAAACCCAAGCTGAATTTTCATGTGCTTTCGACAAATCTATATGATTTTGGTTTACAAGACATGGC---ATGGGATCATGACATTCAG--AAAAATCATATGAAAAATCTAACTGGATTCCCATTCAAAGGGCTTCAGCAAATTCC-----CTATCATTTTTAGTGAAAGATTATTTTATGTGTAAACCT s mm3.chr5 61991140 928 - 149719773 TAAGCTGTTTCCAAGCACA-GAATAATGGGTTTCAACACAGAAAatataatat-aatatatatatata-tatatatattattattattattattattaATTGTTACAGTTGCTTTGATTCACATATG---AATGTCCTAAAACTTAAAATATCTCTGAATTTAAAAATGAAGTAGAATCATGAGATAAAGTTGTAGTGAACGTCATCAACAATTTTAGATTTCTTCCGAATGATAGTCAAAGATTTCTGGAATAGGGAAACTGAGAAACAAAGCATCATGCTTATCTACAATCAGGGACATGCTAGTATAGAAAT------------------------cacacacacacacacacacacacacacacGC-----CTCTGATGATACATACCTCAAGGCTCAAACTAGCCATGCCAGGAGGTGCCATGCCTTGAGCCCCAGGTTGTTGAGGAAATGCCTAAATAGAAATATGAATGATCTTGAGTTCT-TTATTGAGAAACTTCTCTAAGTGTACGTTTGGAGTAGGAGGTCACGGCAGAATGAAATGTCAAGTGGAGAGGCTGCC----ATATTGGCTTATTACTCAGATGACTAGGATTTTCAGATAGAATGAAGAA---TTAAAGTTATCTGGAGGAAT---TATTATACTTAGTAATTTTTCTCTCA----CATCAGAATTTTTGTGTATGTTTATCTTAGCTTTATGTTGCTTTAAAAGGAAA--------------CA--TTCACAGTGAGAATTAAAGGAAGGGAAGAAAACACAAGATT--------TTTATAGTC-ATAAATACGATCACATGTAAAAGCAAAGGAG-----------TTGAATTTCCTTGTGCTTTTTATAAATGGGTGTGCTTTTGG-TTATGGGATATGGT---ATGAGGTTATT-CATTGAG--AAAAATCATATACAGAACCTATCTTGCTTCCCATTCAGAAGGTTTTAACAAGTCTTATGTGCTATTATTT------AATGATTATTTTAAGTTTAAGCTT s rn2.chr14 19400196 955 + 107821284 TAGGCTGTTTCCAACCACATGAATAATGGGTTTCAACACAGACAATAGTTTATTAATGCATATATAT--------------------------TATTAATTGTAACACTTAATTTGATTAACAGATG---AATGACCTAAAACTTAAAATAACTCTGTGTTCGAAAATGAAGTAGAATTATAAGATAAAGTTGTAGTGAATGTCATTAACATATTTAGAATTCCTCAGAATGATAGCCAAATATTTCTGGAATAGGAAGACTGAGAAACAAAACATCATACTTATCTACAATCAGGAACATGCTAGTATAGAAATAGAAATcacacacacacacacacacacacacacacacacacacacacacacacacGGAGGCTCTGATGATACATACCTCAAGGCTCAAACTAGCCATGCCAGGAGGTGCCATGCCTTGAGCCCCAGGTTGTTGAGGAAATGCCTAAATAGAAATATGAATGATCTTGAGTTCT-TAGTTGAGAAACTTCTCTAAATAT--GTTTGTAGTAGGAGATCTCTGCAGAATGAAATATCCAGTGGAGAGGCTGTCTGTCATATAGGTTTATTACTCAGATGGCTTGACTTTTCAGATAGAAAGAAGAA---CTAACATTATCTGGAGGAAT---TATTATACTTAGTGATTTTGCTCTCA----CATTGGCTTTCCTGTGTATGTTTATCTTAACAGTATGGTGCTTTAAATGGCAA--------------CAGATTCACAATGAGAAGCTAAGTAAGGGAGGAAAACACAAGATG--------TTTATAGTC-ATAAATATGATCACATGTAGAAATAAAGGAGACAAGTATGAGCTGAATTTCCTTGGGCCTTTTATAAGTGAGTGTGCTTTTGG-TTATGGGATATTAATAAATGAGGTTATT-CATTGAGGAAAAAATCATATCCAGAACCTATCTTGCCTCCCATTCAAAAGGTTTTAGCAAGTCCTGTGTGCTGTTATTTT-----AAGGATTGTTTTATGTTTAAGCTT a score=14140.000000 s hg15.chr4_random 91964 146 + 1219494 ACTATA---------CTTTGGGATCATATCAAAGGTTTTTTTCCCTTAAATAAAAAGCATTCTAGCACAAAATACTATTATACTTAATGTGTTCACTTAAAAGTTGTTCAAAAATATACCTATCTATACAATTAGCTTTTTAAAA-TGTAAGATAt s mm3.chr5_random 583116 131 + 1172935 ATTATATATTTAAATTGTTCAGATCAGA-TAGTGGGGATCTTTCTTTAAATGAAAAGTATTCT------------------------TGTACTTAGTAGGATGCTGTTGTGAAGCATAAACATATTTACAAATATCTTTTCAAAATTATAAAATAC s rn2.chr14 19401389 131 + 107821284 atcatatatttaaaCTGTTGAGATCATA-CAATGGCTATTTTTCCTTAAATAAAAAATATTCT------------------------TGTACTAAGTAAAATGCTATTGTGAAGCATAAACATATTTACAAATAGCTTTTCAAAAATATAAAATAC a score=29048.000000 s hg15.chr4_random 92650 279 + 1219494 AGTAAATTGGATTTTGAGAG-TCTCTGGTTCTTTGGATATTCTCACTTTCTAAGACCAAGGGGTTGTAATGCCGTCTTTCCTTCAGTTATACCACAAGGATTTAGGGAATGTTTA----------------CCAAATAT--ATCAGTATTAT--TTTTCCTTTATGAGTAAGAAGTTAAAGAATTACACCCCCTAC--TTTTTCCACCCACCACCTTTTTCATGTAAGTAAAATCCCACCTTCTGGGTCATAGTGAGAATTTCTTTAAATAATTCAGTTTTGGACAAGAATAGAGGGAAAGg s mm3.chr5_random 583507 277 + 1172935 AGAAAATTGGATTTTGAGAATTCTCTGATTTCATGGATATCCTCATTTTTGTTGTGTTA-GTATTGTAAT-----TTTTCTTTCATTTATACTGAAAGTACCT---GTCTGTCTGCCTCTCCATCCATCCCTCAAGTATGGAACAGTGGGGCCATTATCCTTCAGGAGTAAGAGGCTAAGGTATTACACCCTGTACTTTTTTTTTAACCCTTAATTTTTTTATGCAAGTAC---TCCATTTTCTTAATTACAGTGCAAAATTTTCTAAACAATTCA-TTGTGGGTATGTG------------ s rn2.chr14 19401776 275 + 107821284 AGAAAATTGGATTGTGAGAATTCTCTGATTTCATGGATATGCTTATTTATGTAGTGTTA-GTAT-GTAACG----TTTTCTTTCATTTATACTACAAGTACCT---GTCTGTCCA----TCCATCCATCCCTCAAGTATGGAGCACTGGGACCGTTATCCTTCAGGAGTAAGAGGCTGAGGAATTCTACCCTGTACTTTTTTTTTAACTCTTAATTTTTT-ATGCAAATACAACTCCACTTTCTGAATTATGGTGCAAATTTTTCTAAACACTTCA-TTATGGATATGTG------------ a score=77126.000000 s hg15.chr4_random 93223 538 + 1219494 TAGAGGGAAAGGCATTACAAATGTGTAGCAAATACTCTGGGTAG-GAAAGAGGTTAGCTGTGTAGACAGGAAGAGTGATTGTGCATGTATGTGTGTATG-----------TGGTGGTTAGC------TTGTTGAGAATTTGGGGGAATCGTGAGAGCAGGACCTTCTTCCCCACTATTTGCCAGTGCATAAATAACACATCCTGGA----TTGAGCCACAGAACAAAGTGTACTTTGCTTTCCATCTGCTCTAAGTCATGACTTAAAGAA------TATTTACACGAATGTATACAGATAGGGGATACATTTCCCATGCAGAATTAATAGGAGAAGAACATCTGATTTGACAGGCAATGAGTTGGCAATAATAAGCAATTGTTCTGTTCCTCAGAGTGGACCCAATTGATTCAGGTGTGGATCATTATAGGTTCAAAGAATGCCAATGTGTTAGACTGATAGTGAATGACTGAGGCTCATCCCAACGTCAG-TATCATATAAAGGTAAGCTAGGGTGGCACCCTCAATTTTTCTTTCATTT-AAAATTCATCTTGCGTGATGGAACAG s mm3.chr5_random 583784 562 + 1172935 TTAAAGGAAATGCACTAAAAATGTGCAGTAAACACTTCTGGTAGAGAAAAAGATGAGTTGTGTAGACAAGGGGACTGATTGTGTGTGCCTATGTGCATGTGTGCATGACAGTGTGTGTAACAGGAGGATGTTCAGATGTTCGGGGTATTATGAGAGCACAGCCTCCTTGACCTTTGTTGGTAAGTGCCCTAGTTCCACATTTTGGAGTACTCTAACTACAGGGCAAG--GTAGTCTGATTTCTATCTGCTCCAAGTCACCAGTTAAAGAGGAACATTTTTTACATGGATGTGAATAGACAGAGGATACATTCCCTATGGAAAATTAAAAGCAGA--AACACCTGATCTGACAGGCAGTCACTTAGGA--AACACGTGATTTCCCCATTGTTCAGTGTGACTCTAAATTACTAATGTGTGGATCACTGTATATTCAGAGAATGCCAATGTTTTAGATTGATGATTGATGGCTGAAGCGGACCCCAGTCTCAGTTATCATCCAAAGGCAAGTTAGAGAGCCAGCCTCCATTTTTCTTTCATTTAAAAATTCTTGTTGGGTAGTAGAACAG s rn2.chr14 19402051 550 + 107821284 TTGAAGGAAATGCACTAAAAATGTGCTGCAGACACCTCTGGTAGAGAAAAAGAAGAGTTGTGTAGCCTAGCAGAGTGACCATGTG--CTTGTGTGCATG----CATGCCAGGGTGTGTAACAGGAGGATGTTCAGATTTCCAGGGTATTATGAGAGCACAGCCTCCTTGACCTTTGT----AAGTGCCCAAATTCCACATTTTGGAGAGCTCTCACTATAGGGCAAG--GTAGTCTGCTTTCTATCTGCTCCAAACTACCAGTTAAAGAGGAATATTATTTACACGGATGTGAATAAACAGAGGATGGATTCTCTATGGGGAATTAAAAGCAGA--AACACCGGATCTGACTGGTAGTCTCTTAGGA--AAC--GTGATTTTCCCATTGCTCAGGGTGACTGTAAATTACTAACGTGTGGCTCACTGTATATTGAAAGAGTGCCAATGGTTTAGATTGGTGATTGATAACTGAAGTGGATCACAGTCTCAGTTATCATCCAAAGGCAAGTTAGGGAGCCAACCTCCATTTTTCTTTCATTTAAAAATTCCTGTTGGGTGGTAGAACAG a score=32358.000000 s hg15.chr4_random 94235 285 + 1219494 AGGTAAATTTGCTAGTTAATTACTAGCTTTAAATGGAATTATCTAGCTGAGTTTTGTAACCATAGAAATTTAGAGATAGTTCTTTTTGAAATGAAGAAA-ATGTATTTTTTTC-----AAAGAAATTTCCTCTTTCCATTTCAACTTTATAATGATAGCAATAAGTTGATAATAAAATTTCGCCATGCATTGTGGAGACTA------TCTAAGCTTTTAACT-TTGAATGAGTGGAATAAGATCTAGAAATTGTCTTGGGACTATTTTAAATAACTTTTT--AGTAGAAATA-TCATACTT s mm3.chr5_random 584344 272 + 1172935 AGCTAAATGTGCCAGCTAAATACTAGCTTTAACTGGAACTACAG--------TCTATAGCCAT---------GTGATAATG-TTGCTAATATAAAGAGACATATACTCCCCCTGCCCAAGAGATATTTTTCCTTTTCATTTCGATTTCATAGTGCTAGCAAGGACTTGATAATAAAA----------CATGATGAAAACTAGGATGCTGTAGTCTTCTACCTGTTAAAAGAGTGTCATAAGACATAAAATTTGCCTTTGAAATATTCCAAATTGTTGTTTAGAGTAGAAAAA-TTATATTT s rn2.chr14 19402599 280 + 107821284 AGCTAAATGAGTAAGCTAATTACTAGCTTTAACTGGAACTACATGTTTTAGTTTTATAACCAC---------GTGATCATG-TTGCTAAAATAAAGAGACAGATACTTTTCCC-CCTAAGAGATATTTTCCCTTTTCATTTCAATTTTACAGTGCTAGCAAGGAATTGATGATAAAA----------CATAGTGAGAATTAGGATGCTGTAGTCTTTTAGCTGTTCAAATAGTGACACGAGACATAAAGTTTGCCTTTGAAATATTCTAAAATATGGTTTGGAGTTGAAAAAATTATATTT a score=296265.000000 s hg15.chr4_random 94831 2416 + 1219494 ACTTACCGCTTTTGGATTGCAAGACTGACATCTGAGCAACTATGGCTTTTGACTCAATAGGACTAAACCACTGGATTAAATCAAGTGAGTCTATGCGTGGACTCTCAG---TCCATATCCCTTCAGTGTTGTTTGGAGTTCGACAATCAATAACCT------TTTCTGGGACACACTCTAAAGACTGACTTACCGGCACTGCAAAACTCATTTCCAGGAGGCATAGGATCAGTATCAGGTCCTTCATTTTGAAAAGTGGAATCTAAAACATAATTAAGTTGGAGAATTAAATCAGATGAATTTTTATTCAGAATGGTTAAAAGACAATTTTTGAAAATGAGCCTGAGTCTCTGCTCTTACAAAAACCACCGGGATAAAGG--TTAGAAGAACAAAAA----------CAAAAACTAAATGTTACTAAACAACCGATTTGTATGTAGTAGTTTCTGAAATAAATTAACAAGCAATTAAAA--AATATCTAAGCACGT-TTTAAATGGATCTACAGCCTAAATAAGTATGTAGGAACAACCTCCATCGATATTCTTTG--TGATATATTTCATTTCATAAAGTGAATTATGAGTTTAAAAATCCTTCCCACTAAGTAAAATATTGGTCTATAAGGTATTATTCACAGAAGTTTATACTTTGCTTACCCTTTGGGACACATTTTGAAATGCATGTGAAATGTAATGCAACTAAGTCATTTTATAACAAACCTTTATTTGCAGGAATAGAGGGTACATCATTGCATGTTTAGGTAAT-CTACGTAACCATGACAAAATTT-TTCTTTTCAAATGAGAGTAAATTGGCTATCTTAATTTTCTTTGATGTTAGTGGAAAATATGTCTCAAATTTAGCTTTCCTCTTCCTAAAATGAATTATCTTTTAAAATTTATTCTATAAATTCAAAAAGCTCTTTATTCTTACATGAATAGAGATCTGAATAGCCTAGAAATTTACTCATCTTCTAATATTAAAAAGAATTAGGCACTATAATCAAAAACATTAAAAAAAAC----ACAATCTATAAATAAAAGTCTTTTTTTTTTTCTTAGTTGAATGGGTGTTAGGCATGTCATCTCTGGGACATGCTAATGGATTACAACAAGCAATAATTCAGCTACTGGTGACAAATGAAGATAAATCCTCTTTATAAAAGCTGTCAGGAGATAGGAAAAAAAGAATTTACAGGAAACACATGGAAATCATAAAATCCCATTTTACCTTAGATGCTGACATGCACTGTGCTCTCAGGGCCTGATGATGCCAACCAAGATAGTTCTAAGAAAAGAAGATTAAAATTTTTTT-CAGGACTGTGCGTGGGACTTGCTCTGTACTTCTCATTCAGGGAAGATTAGAAACCTTTATTTAAAGTGCCAATCCACCAATCAAAGTGAAGCAAAATGGCGAGGGGTGGCGGGGGGGAGTTGGGGCGGGAATCTCTGCTCCTGCAATTAGTCCACACCCTTTTATTGCGTGCAGGGACATTGGCCCAGTAGGGTCTCATTATTTTTAATTGTACTGCAGCCCCTGTACTTATTCAGAGAACTTGATAGCAGGGAAGGCAGTAAAGGAATAATGGACATAGGCTCTGAAGACAATTATTTTGGTGAGCTGGGGAAAATATATGTAAAATAGGTGCAAAACAAA-----ACCTGTTTTGTGCAGGT-TTTATCTGCAGATAAAGCTAGTGACCCAATGCTAGCATTCTTCAGGTTTTCACCCTCCTGTTTGTTGTAGTAAAAGAGA----CTACT--------GTCCTTCCCC-CCAGCACACACAGAGTTTAAAAGAAAACACTAAAATGT---TAG--------ATGGAAAATTAATGTG---------------------TGTG---------ATTTCTTCCTTGAATTTCCTAGATATTTTCATATCTGGAGATAATTGATTAGAGATAGCC-AAGCTTTT---------GTAAGAAACTACAGTTGGACCCTTTGCAAGAATCAGGTTTACTTCAGGTAAACGTTTGGTGCATTTTAAAAAAAATCTGTGGGGACGGGGACGTAAATCAGAACATTCTCTATGAACCAAATCAAT----GGG--CACAAGTGTCAGTTCACTCTTCAGATAGACACATTCCCAGGCATTAGTATCAAGCCAGGTTAATAAGACATATTTCGATCACTTAAAAGGTTAACGTCAACACAGATTGGTTTTTCTCCGTGAACAGATAATATC---TTGGATGTGGATTGAATATTAGCTGCTTTTGTTACTTCTCTGCCCATCCTTGTCTTTCCAAAGTTGTGATTTCAGATATGGTAGGGATAAGCATTTAAGATTAG-TTCTGAAGAAGGGATGAGTCAGTACACTCTTTAGGGAAGTAGGGATCTTGTCAATTACAGGGAACATTGAGGAAGCTGGTATTTTGAGAGAAAGCTGTATCCATACCCAAATGTAGGCCTAACAGCTTCAAATAATGTTATCTTAGAAG-------CTGCTCCT-------------------G--AAAACCTCTGTGTTCCAC s mm3.chr5_random 584616 2241 + 1172935 ACTTATCCCCTTTCGATGATAAGGCTGACATGTG-GCCACTGTGACCATTGACTCACTGGG----AGCTAC------AAACTGAGTGAGTGCATGCCTGAAGTGTCAGGACAGAGTGTCCCT---GGGTTTGCTGTAGTCAGATG--CAGGAGCCCGAGA--TCCCGGGTA--------AGGGATGGACTTACCGGCACGGCGAGGCTCATTTTCACTAGGGACAGGAACAGGATCAGGCCCTTCATTTTGAAAAGTGGAATCTAAAACACAGTTGGGTTGTAAAATCACCTCAGGCAAAATTGCATTCATAGTGGTCAAAGTATATTTC-------TAAGAGCGTGTGGCTGTTCTTCCAAAGACAATCAGGTTAAAAAACTCAAAAATGCAAAAGTGCTAAAATGCAAAAGCAAAAAGCTGCTAAAC--------------CAGTGGCTATCAGAATGGAATGACGAGCAGCCAAACTATGGATCTGAGTACTTATTTTTATGAAGCTGCAATTTGAATGAATGTTTAAGAACAACCTCCAGGAATATTCCTTGAACACTATGCTTTGCTTCATAAAATG---------------CATCCTTC-------------------------AGTCACCATTTACAGAATTGTATTCTTTGTTTAAACTC------AGAATTTGAAATAC------------------------------------AACCT-------------------------------ATGATTGGGTCATAATGCAGAACCATGTCAAAACT--CAGCCTTCAAGCTAAAG----TTGAGTATATTTATCTGCTTGGA---TAGTGA---------------------TTTTCCTTCCTAAAAATGAATAATC--TTGAGATGCATTTTGTCAGTTC------------ACTCTCGAATGGAAGCAGATCTGATCAGC----AGGTGTGCTTATCCTCT-TTACTTTTATAAATTAG-CACTATCACTAATAATCACAAACATAGTTTTAAAAAGTCATACAAATAAG-----TTTATTTTCTTAGGTTAATGG----TA---ATATATTTTCTGGAATATTCTAATGG-TTGAAATAAGCTGTTATTCAGCATCTTGTGATAAATGAAGATAAATCTTTTTTGTAAAGGTTATCTGGAGACAGG-AAAAGAGAATTTATAGCAAACACATGGAAATGATAAAATCACATTTTACCTTAGATGCTGACATTCACTGTGCTCCCA-GGCCTGATGATGCCAATCAAAACAGTTCTAAGAAAAGAAGATT--AATTTTTTTTCTGGACTGTTCCTGGGGCTCTCTCTGTATCTCTCATTCTGGAAAGATCAGAAACCTTTATTTAAAGCGCCAATCCACCAATCAAAGTGAGGCAAA------------TGCAGGAAAAA----------AA--TTGTGCTCCTGCAATTAGTCCACACCCTTGTATTGCATGTGAGGACATTGGGCCTGCAGGCTCTCATTATTTTAAATTGTAACCCAGCCCCTGTATTTATTCTGAGAGC-TGATTGCAGGGAACACAGTAAGGGGATAATGGACATGGGCTTTGAAGACAATCATTTTGGTGAGCTTCGGGAAATATATGTAAA--CGGTAGAAAACAAGCCATTATCTGTTTTGTGAAAATGTTTATCTGCAGATAAAGCTAGTGACCCAATGCCAGCACTCCCAAGATTCTGACCCTCATGTTTATTGTAGTAAAAGAAATCTTCTACCACCACCACACCCCACCCCACCAACACACATATACCCTCGAGGGAAACACCAAATTATCTCTAGGGTTTGTTATGGAATATGAAAATGTAGACCAGATGTTGAAGATTTTGTACTCTTTTTTTTTTCCTTTCTGAGTTTCCTAGGTATTTTC--ATCTAAGGATAGTTGTCTGGAGTTAACC-AA----TTAAAAAAAAAAAAAGAAATTTAAGTTG--------GCAAGAATGA----------TGGAAAATCTTTGATGCATGTT-------CTTTGTGGGGAGA-GAAAATAATTTAGAATATTCTACTGGAACCAAACAAATCTAAGGT--CACAACTCTACCTGTCCTCTTTAGACACTCA-GTTACCAGGCATCAGTGTCAAGCCAGATTAATAAGGTCTCTCTGGGTCACTTAAAAAGTATACTTCAACATGGCTGGGCTTTGCTCCATGAGCAGATAAGAGCGGTGTGGATATAGACAGAGTACC------------------TCTGCCC-TCTACGTCTATCCTAGGGTATGATTTTGTACAT-----GGATATCCATTTACGACCAGTTTCTGAAGAAGGGATGACTCAGTAGACTCTTCTGGAAAGTAGAGATTGCACCAATTATAGGGAACATTGAGGAAGCTGGTATTTTGGGAGAAAGACACCTTCATACCCAACTGCAGACCTAATAGCTTCAAATAATGTTATTTAAGAAGCTTaatcctgctccccgaagacataggttgcgaag--aaaaccccagtgctccac s rn2.chr14 19402879 2202 + 107821284 ACATATTGCCTTTAGATGGTAAGGCTGACA-GTG-GCCACTGTGACCTTTGATTCACTGGG----AGCTAC------AAACGGAG--AGTCCACGCCTGATGTGTCAG---ACAGTGTCCCT---GGGTTTGCTTGGGTCAGATG--CAGGAGCCCGAGAGATCCCTGG--------------GTGGACTTACCGGCACGGCGAGGCTCATTTTCACTAGGGACAGGAACAGGAGCAGGCCCTTCATTTTGAAAAGTGGAATCTAAAACACAGTTGAGTTGGAAAATTACTTCAGGCAAAATTGCATTAATCATGGCCAAAGTACATTTC-------TAAGAGTGAGTGTCTGTTCTTCCAAAG----TCAGGTTAAAAACCTCAGAAATGCAGACA----------------CTAAATGCTGCTCAAC--------------CAGTGCCTCCCAGGATGGAGTGCCGAGCAGCCAGCCT-CGTGTCTGAGTACTCACTTTGATGAAGCTGCGATCTGAACGAATGTTTAGGAACAACCTCCAGGAATATTCCTTAAACGCTATGCTTCACTTCATAAAATG---------------TGTCCTGC-------------------------AACCACCATTCACAGAATTGTTTTCTTGGTTTAAACTCT--GATAGAATTTGAAATAT------------------------------------AACCT-------------------------------ATGATTGGGTCATAATGCAGAACCATGTCAAATCTTACAGACTTCAAGTTAAAG----TTGAGTACATTTATCTGCTTGGA---TAGTGG---------------------TTTTCCTTCCTAAAAATGAATACTC--TTGAGATGCATTTTCTAAGTTC------------ATTCTCACATGAAGGCAGATCTGATCAGC----AGGAGTGCTTATCCTCT-GTACTTCTGTAAATTAGGCACCGTCACTAACAGTCACAAA-ATAATTCTAAAAAGTTGAACACGTAAG-----TTTATTTTCTTAGCTGAATG-----TA---CTGTATTTTCTGGAATACTCTAATGG-TTGAAATAAGCTGTTATTTAGCATCTT----------------------CTTTGTAAAGGTTATCTGGAGATAGG-AAAAGAGAGTTTACAGCAAACACATGGAAATGATAAAATCACATTTTACCTTAGATGCTGACATTCACTGTGCTCCCA-GGCCTGATGATGCCAATCAAAACAGTTCTAAGAAAAGAAGATT--AATTTTTTT-CTGGACTGTTCCTGGGGCTCTCTCTGTATCTCTCATTCTGGAAAGATCAGAAACCTTTATTTAAAGCGCCAATCCACCAATCAAAGTGAAGCAAA------------TGCAGGAAAAA----------AAAACTGTGCTCCTGCAATTAGCCCACACCCTTGTATTGCATGTGAGGACAGTGGGCCTGCAGGCTCTCATTATTTCAAATTGTAACCCAGCCCCTGTATTTATTCAGAGAGC-TGATTGCGGGGAAGACAGTACGGGGATAATCGACATGGGTTTTGAAGACAATCATCTGGGTGAGCGTTGGGAAATATATGTAAA--AGGTAGAAAACAAGCCATTATCTGTTTTGTGCAAATGCTTATCTACAGATAAAGCTAGTGACCCAATGCCAGCACTCTCAGGATTTTGACCCTCATGTTTATTGTAGTAAAAGAAATCTTccacc-ccaccccaccctaccccaccAACACGCATATACCCCAAAGTGAAACACCAAATTACCTCTAGGGCTTGAAAGGGAATATGAAAATGGAGATCAGATGATGAAGATTTTGTG-GCCCTTTTCTTTCCTTTCTGAATTTCCTAGGTATTTTC--ATCTAAGGATAATTGTCTAGAGATAACCGAA----TT----AAAAAGTAAGAAATTTAAGTTGGCTTCTCTGCAAGAATGA----------CAGAAAATCTTTGGTGCCTGTT-------CTTTGTGGGGAGAGGAAAATAATTTAGAATATTCTATTGGAACCAAACAAATCTAAGATCACACAACTCTACCTGTACCATTTAGACACTTG-GTTACCAGGCATCAGTATCAAGCCACATTAATAAGGTATCTTTGGGCCATTTAAAAAATACACACCAGTGTGGCGGGGCTTTGCTCCATGAGGAGATGAGAAT-GTATGGATACAGATAGAGTACCG-----------------GCTGCCC-TCTGTGTCTGTCCCAGGGTATGATTTTGTACAT-----GGATAGCCATTTACGACCAGTTTCTGAAGAAGGGATGACTCAGTAGACTCTTCTGGAAAGTAGAGATTGCACCAATTATAGGGAACATTGAGGAAGCTGGTATTTTGGGAGAAAGACATCTTCATACCCAACTGAAGACTTAATAGCTTCAAATAATGTTATTTAAGAAGCTTaatactgctccgtgaagacataggttgttaagcagaaatctcagtgcttggc a score=14779.000000 s hg15.chr4_random 97247 157 + 1219494 TGATACCAGAATTATCTTTAGGATGCAAAGAAATGAAGAATGTGAATGTGTTTTGCAAACAGCAAAATGTTATTGAAATGAAAAGTATTATTTTTCATGCTGTCTCTGGTGCTTGATGCagtcccttaatctcttttgagccccagttccttcttct s mm3.chr9 49433822 122 - 124467299 TGATAATATAACTTCCTTTAGATTATAAGTAGATG----AGGTCAATGTGTTTTGTAAACTGTAAAATCTTGCTGAAAT-AAAATTATTATTCTCT------------------------------GACTCTCTTCTTGTCACCACTTCCTCTTTCT s rn2.chr8 50894131 124 - 127756414 TGATAATGTAATTTCCTTTAGATTATAAGTGAATG----ATGCCAATGTGTTTTGTAAGCTGCAAAACCTTGCTGAAAT-AGAATTATCATTCTCT----------------------------TTGAGTCTCTTCTTATCATCGCTGCCTCTCTCT a score=631.000000 s hg15.chr4_random 103411 31 + 1219494 ATGTAACATATGAATGGATCTCTTATCATGT s mm3.chr5_random 602679 25 + 1172935 atttaacattt------atttattattattt a score=5037.000000 s hg15.chr4_random 103442 201 + 1219494 TTGATGTAAATTTTTTGATAGACATTAAAATAAAAATTAAGTTAAAATACCTTCCTTGGAAGCCTTCCTAGTTCACAGTAACTTCTCAGGTAG--TATACTTCATAAATACTCATTGGAGTCAGGCTGATGTCATTTTTTGCCCCTGCTTCCTTTCTTT-CACGGTGGATTCCAAAGGCACCTACCTGGAAACTCTGACACTGA s mm3.chr5_random 602867 196 + 1172935 ACATTATAA-TTTTTTGACAAACAATTAAATTAGT-TTAAGTGAAAACACCTCCATGAAAAGGCTTTGTATTTCACACTAATTTCTTACATAGAAGATGCTTTAAACATATC------AGTTAGATTGATCTCATTATCTGCCTTCTTTGCCTTTCTTGACATGGTAGATTTAAAAGGAACATATTAAAAACTCCAAACAGTGA a score=76448.000000 s hg15.chr4_random 103643 897 + 1219494 ACAAATTTGGCATTGGTCCTTTACAAACAGAGGAGTTTGCAGCAGAAATATATGCCATTGATACAGTAGCTCTTGGCAGCTTGTC-AGTAAAACACCCACTTGCTTTGTGTATTAAAATGATGATTCATTTGTTTCTGTCCCGGATTATTACCTGCTGTTTGTACCTGTAGTAAGCCCATGCAGAAGGACTTTTGGAAGAA--GAGAGTTGAC-CACAAGCCAACACAGAATGACTTCAGCTTTTCACACGTGGACCCTTCATGATTACATCAGAGTCAGTTTTATAGTAGAAGTGGTATTTGG-GTTTGCTCGGCCCAGAAGTTTTTGGTG-TAAATAACTGAAAAGCAAGTCACGCACATGTCCTGTGCTAGTCACTTAACTGCTGAGTTTGTTAAAGA-----GCATTTACTAAAGGCTATGAAGAGACCGTTGTATTAAGTTTAATGGAGGTAAAGAGAGCAATTCAGGCTTATTAAAAAAAAAAGTTATAGTCTAGTTGGAGAAACAATACATGACATTGACACATGAGCTGACATGAGACTTACTATA--AAAAAATGCGTAAAAGAAGATAGGGTATGAAGTgcttaattgctaagagcgtcggttttgggga---tcagactgcttagttgagatacagtgtcatgattgtctagttgtgtgtcctggacaa-gttattt-taccatgtgttacctcagtttcctcatctgtaaaagggtgtt---aatcaaggagcctacataggaataaatgaaataatacactaaagtgcttagaacagttcctgatacattagaagcacacaattaatgcaaatgattattGATTCAGTATAAATATTGGAAGGGTGTCAAATAATGAGGTTACTAGAACGAAATAGGCTTAATTATAGAAGTATTCTTGTAGAAG s mm3.chr5_random 603063 774 + 1172935 ACAAGTTTGGCATCATTCCTTTATAAATAAGGAGGTTTATAGAAGAATTATGTATAATAGGTA-------------CAACTTGTAAAGTAAAATGTCTCCTTGCTTGGTGTGTTATATTG-TAACTCAT-------------AAAGTATTATGCACTC-TTGCTGCTATAGCAAGGCCATATAGATGTACTTTTGGGAAAAATGAACATTGACTCATGGACCAATGTGGAATGGCTTCTGCTTTTCCCCTATTGACTATGCCTGCTGA---CAGAAT--------CACTAGAAATGGTATTTGGCTTTTTCTTTGTCCAGAAGAGTCTGTTA-TAAGAAACTGGAGA--TGTTAACCAACATAA-CTGTTGTGGTGAGAAAGCTGCTGAGTTTGCTAAAGGTCTACACATTCATGATGTGT-------AGACCA-CATATTAGGTTTAATGAAGGGGA--TGGACACTTCCTCTCC--------CAAATGTTACAGTCAAATTGAAGACACAGCATGTGACATTGAAACATGAACTGATATGGGATATTTTGGG--AAAAACTATGTAAATGAAG-GAGGGCATGAATTGCTGAG-----AAGGTTGTGGGCCCTAGGATCTATCTGTTGACTTTGATGGGAG--AGGTTCACTGGTCTCTAGCTGTGTGTCTAAGACAAGGTTTTTT-TTCCCCATACTA-------TTTCTTACCTGTAA------------AACTGAAAGATCCAAATAGGAGTGA---ACACAATGTGCT------CTTAGAGAAGGGTCTGACATAGTGAAAACTCACCAGTAATGCAAATGGGTATGCATTCAGC--------------------------------------------ATGGGCTTAATCACAGAAGCATTCTTGCAGAAG s rn2.chr14 19414641 776 + 107821284 aCAAATTTGACATTACTCCTTTATAAATAAGGGGGTTTATGAAAGAATTATGTATATTAGACA-------------CAATTTATTAAAGAAAATGTCTAGTTGCCTGGTGTGTTATATTG-TAACTCCT-------------AAGTTATTATGTACTC---GATGCTATAGCAAGGCCAAATACATGTACTTTTGGGAAAAATGAACATTGACTCATATACCAATGTGGAA----------TTTTCACTTGTTGACTGTGCCTACTGA---CAGAATCAGCTTTACAGTAGAAATGACATTTGGCTTTTTCTCTGTTCAGAAGGTTCTGTTATTAAAAAACTGGAGA--AATTAACCAATATAG-CTGCGCTGGTCACATAGCTGCTGAGTTTGCTAAAGGTTTACACATTCATGATATGT-------AGACCACCATATTAGGCTTAATGAAGGGAA--TGGGCACTTCTTCCCC--------CAATTGTTAGAGTTAAATTGA--ACAGGGTATGTGACATTGAAGCATGAGCTGACATGAGATATTTTGAGAAAAAAACTATGTAAATGAAG-CAGGACATGGATTGCTGGG-----AAGA-TGTGGGCTCTGGGATCC-TCTGTTGGCTCTGTTGGGAG--AGGTTCAGTAGTTT----CTGTGTGTCTGAGACAAGGCTCTTTATTTTCTATACTA-------TTTCTTACTTGTAAAAGAATGAATGTAACTGAAGGATCCAAATAGGAGTG-----CACAGTGTGCT------TTTAGAGAAGGGCCTGACATA-TGTAAACATACACTTAATGTAAATGCATACTCATTCAGC--------------------------------------------ATAGGCTTAATCACAGAAATATTCTTGCAGAAG a score=41455.000000 s hg15.chr4_random 104544 370 + 1219494 TTCAAATACAGGATTGCCGGGGATGAAAAGTATATACTGATAT-------------------GTATAAGGTAAAAAACCCTTCCATACTGAAGGAATGATCCATGAAAAGAAATGAACTGGATCCATGATGGTGACAGATAAGCAAATTGGCCGAGTTTAAGTGCTACTAGGAATTTAGTGAAAAATGTATATAATTGGTAGGACATGATATGATCACAATGCCAAGCATGCTAAAACCTTAGTTTTTCCTTTTGGAAGATGGATATGGTAATAACTGACTAGGAGAACATGAAGCAAAGAAGAGTATCCTTACC---------TTTTTTTTGCATGTAAGCTACATGTAGACAAATAATAGTACCATG------------------------------------------AAAA---------TTAAAAGTTTTATTCTAACTTTTGG s mm3.chr5_random 606632 421 + 1172935 TTTAAATGTTGGCTTGCCAGTGATGGA---TATAGACTGACAGACTGACTTCTGATACTGCCTGACAGACAGGCAGACTTCTCCAT--TGAGAGAAGAATCTGTG--ACTGAATGAGCTAATTGCATAATGCTGAGAGTAAAGCAAATCAACTAAGGCTAACTA-----------TTGGTGAAAAA---ATATAGCCAGGAAGATAGAATATGATTATAATGCCAAATATAAT-AAGCTTTTGTTTTTCTTTTTGGACAATGGAT---GTACTAACAGTCTAGGATAACATGAGGCAAATTAGAGTATCTCGACCTCCAACTCTTTTTTTATTCATTTAAGCTAATTGTAGTCAAAGGACAATACAATG---ATTGAAATCTTTAAATAGCCTTATATAAAGCCTTATAATAAAAACAAAAAATTCAAAGCTTTCATTCCAGCTTTTAG s rn2.chr14 19416558 389 + 107821284 TTTAAATGTTGGGTTGCCAGTGATGGA---TATAGACTGACAG-----------------------------GCAGACTTCTCCAT--TGAGAGAGGAATCCGTG--ACTGAATGAGCTGAATGCATAATGCTGACAGTAAAGCAAATCAG-TGAGCTTAACTA-----------TTGGTGAAAGA----TATCGCTAGGAGGGTAGAGTGTGACTGTAATGCCAGATACAAT-ATGCTTTTGTTTTTCTTTTTGGAAGATGGAT---GTACTAACAGTCTAGGATAACGTGAGGCAAATAGAATTATCTCTACGTCTGACTC-CTTTTTATTCATCTAAGCTACTTGTAGTCAAAGGGCAATACTATGAAAATCGAAATCTTTAAATAGGC-TATGTAAACCTTTATA--AAAAACAACAAATTCAAAGCCTTTATTCTAGCTTTTAG a score=1095.000000 s hg15.chr4_random 104914 64 + 1219494 ATTTTTTTGGTTCCATAATGTAAAAATCTGATATTTGGatatatatatgtatacacacacacat s mm3.chr5_random 607053 60 + 1172935 AGTTTTTAG---TCATAA-GTATAAAATTTATATTGATATTCATATTCAAATATAAACGAACAT a score=19370.000000 s hg15.chr4_random 109860 256 + 1219494 AAAATAAATTTCACCTATTTTTAGACAAACATGGACTGTAGTCGTGACTAGGGAATCTGTATTGTGATTCTCAGATGCTTCATTTCACAGAGTGTTTGAAATGTTTAGTTAAATATCATC-------T--TTTGTTTTTCTTAAAGAATTTCCTGACCATGAGAGTCCTGGGAATGAAGAGCTTAGAGGATTTTACTGAATTTTAGATGA-GTAAGGTAATGTTTGGTTGATGTTATAAAAATGTAAGACTCTAAAATCAGCTGAA s mm3.chrUn_random 53664964 238 + 117911829 AAAATA---TTGAGCTATTTTTTGATAGACATGGCTTACAGTATTGACAAAAGCATCAATGTCCAACTT-TCAGGCACTGTACCACAGTGTATATATGAAAAGTA-GTTTAGACACCATCAGAACTCTGCTCCCCTTTTCTTCCAA--TTTCTTGAACATCAAA-TCCCAGG-----TGGACTTAAGAG---TTTCTGAATTGTACAAGGTACATGATAATGCTCGGTGGATATTGTAAAAATGT------------CCAGATGAC s rn2.chr14 19417210 235 + 107821284 aaaATA---TTGAACT------TGATAGACATGGGTTACAATATTGATCATAGAGTCAATATTATGACT-TCAGACACTGTACCTCAGGGTATGTATGGAGTGTTTGTCTAGACACCATCAGGACTTT--CTCCCTTTTCTTTCAG--TTTTTTGAACATCAAAATACAAGG-----TGGACTTAGAGGGCATTTCTGAATTGTACACGATATTTGACAATGCTTGGTGGATGTTGTAAAAATGC------------CCACGTGAC a score=189946.000000 s hg15.chr4_random 110431 2129 + 1219494 caaataaatgaataaataaataagtaaatTGACCTGCCAGTGTCAGAACTTCTTTTCTCAAAAGACAACCAGGA--GATTTCTCATTAAGGTAAGGTAAAGACCTTGTTGTTTTCCTTCTGTTGTCTCAGCATTTCTGGCTGGAAGACAGAAGTGCAAAGAGGTACAAAACTCTTCAGGTACAAGCAAAATAATAGAGGAAGCACAGAT--GATGAAGCACATGCATCTGCTCTTTAAACCAGCAGGATGTATTTATCTCTGACTCATTCATTGCGCTGTGCTT-CCCAGGATATAATAAAATGTAGCATAGAATAAGGGGGCAAAGGGAATAGAAGGGGCTATCTATTAGGTTCTACTTttactgtatgcctgacactttccctatgttattatatttatttctcacaagaaccccagaaagaagatgttattatgatccccattgtttaggcagtgaaacaagctcttaagatcaaagagcttttacaacttgctccaggccacgcagatgagctgcagaatcaaatttccagtccagtctaggttcaaagtttatggctctcccactaCTCCAGTATGTAGGGCTGAAATAGCACTGCACAGCGTTATCCAGGAGACTGCCGGCTTCCCCCCAGCCTCCCCTGAAGGCTTGTAGGAACAGCTGTGTGGGAGAACGCTCACAGCTGTACTATAGGTCTGCTCTTCCCAAAGCATGACCTGAGCAACACTGCTAGCCTCTTGAGATGCTCCTTGATAAAAACGTTCTGTGATCAAATATGAACACTGCATTCTATGTCTCCAAGCCCATTACTGGTTCTGAAAAACCTCATAGTAAAGAAACTTT-AAAACTTTCCTCCAAACTTAGTTTTCTTCTAACACTTTTAAC-CTGTGGAAATGGTGTTCTGTGGAGCATACCTTAGGAAATGCTATTTAGGATGAGTCTGTTACAACTtgggatgtgagctccctgagggcggcggtgttatttaccttcagtatctacagtgcctgtcacagaatagggttcaatgtttgttacataaataaCTTTGCGAGTAAACAAACTAATTACATTGCTCAATCC--ACCTACTCCAGACAGATCTACCTGAGGTGAAGGAA----CAGCCCATACCTGTG-------------------------------CTTACTCAAGGCCTAAGGTGGAAGATC-----CTTCATCCTTCAATACATATTGTGTT------TAAGATTATGGAAACCA------TCTCTACTTACCTTGTAAGGCATATGGGACAC-----------------------------TTGATTGATCCTTACATTGTGCTCGGAAGAGGGAATGGAAACGAGAAAGcca---tttgttaaatgtctactaaatggtaggcaatgggaaggcaccttttctgtggtattttatttaaccttcatcacagacttaaaagtaagtctagttgtccca-tctttagagatgataacatacgctcagagaagctaaggaactagcc-aagatacgtattcgaccagcatgtcagaatttgaatccaggtcagtctgacttcaaaatccatgtatgctctgcctta-tcacatcctgcccctAGGTAGGAAACTGGATTTGA-ATGGATTATATCAATACA-CATTTTTTATTTTGAGATTTTGACATGCCTTAAATATATTGTGAATATTAATTTGTAATAATTGTTAGAAGGAAGCCCAGAGGCATGACTGAATTACTTTCATTTTGACTATGGGCTCTCTACTTTGATTTTTTTTTTTTTTTAAACAAAACAAGATGAATTTGTTTCTACCATTCTAAAGCCTGGAGTTGTAAGTTATGTGGAAGTGCTCTGCAGTGTGTATGTTGTGTTATGATGCTGCTTTT-TCAGATACAATCTCCTTGTTCTTTTCTTAGTTGAACTTCATTACTTGTACCAATCCTTTAAAACAACAAAACTTACTGATTTGGTTTAGAAGGGCTGGTCAGAAATGGCAGTCTCTGATTAAAGACCTAAGCCAACTTGGAGAAAATTATACTGTATTCAATCTACATTTTTGCTTGATAGGCAATGTCTGAAGGTG--TGCATGGGGTAATTACCCACAGAAAAGATAGGCTGGAAAAACACAAAAATGAGTTTCTCCAAACCAGAGAAATGAATCATTAGCAAAAAGCAAACCAGATGAGTTAGCATACCTCACATTTTA s mm3.chrUn_random 53665202 1787 + 117911829 CAAAT-GATGGGTGGAGAAA------------------------AGAAC------TCTCAGAAGATGG-CAGGAAGAATTACTTATC-----------TAGACCCTGTTGCTTGCCTTCTGTCATCTCAGCATTTAAGGCTGAAGCACAGAATTGCAGAGA-CCACAAAAC--------TGCAAACAAAATAACAGAGGAAATACAGACCGAGAGAAGCACATTTGCTTGCTTTGTAGGCAAGCAGGATGTATTTATCTCTGAC----TGGTTGTGCTGTACTTATCCAGGATGTAATAAAATCCAGCCTAGAACAGGG------------TGGGGGAGAATGTCTAGTAAACTCTCACTTCAGACTATACCTTGCACCTTCcttc----------tttattcctctcaagaattct---aagaggctggtattatgagctttattg-------agtaa---------tgaggataaaagagcttt-ttgatctgct-caagcgaggcagataaactgcagaatcaaatctctaatccagtttgggctcagtgcccatggctgtcccactaacc---------------------caTTG------------AGGAAGAACACCTGCTTGCTGTAAGCTTCCCCCAAGGGATTTCAGAAA-GGCTGCATGGGAGACTTTCTGTCATTACACTGTAAATCTGTTCTGACAAA---------------------------TCCCAAAGTGATTCTTTGAGAACAGGTTC-ATG-TCAACTATTTGTACTATATTTTATGCCTCCTAGAACACTACTGTTTCT-AAAAACTTCAAAGGAATGAAATTTTGAAAACTTTCCCCTAAACTTAGTTTTCTTAAAACACTTGAAAAGCCGAGGACCTGG-GTTCTGTAGAACAGACATTATGAAATTATATATAAGGTAAGTCTAGCACAGCCTGAGAAGTGAATGCCTGTGAGTCAGAGAGGTCGTTTATTTTCA-TATTATcagtgcctgtcatgtaatagggattaatatttgttaaataagtga-----aAAATAAGCAAGCACGTGACATTCCC---TCCTAAGCTATTCCAGTCATGTCTATGTGAGAAGAAAGGG----TGGCATAGAGGTGTGAGGAGGAGGAAGGCTGTCTGCTGTTTAGCACCTCATCTAAG----AATGTTCACGTCCTCTCTCTTCATTATCAGATCCAGTCTATGTA--TATATAAAAGCATATAAATTAATCAAGTATCTTAATATATAATCAAGCATATTGtatattaattaaaattttatattaaG--TATCAATTGATTAATTTTTACATTTCGCA-AGAAGTTTGAGTGGAAACA---AAGTAATCCTTTATTACATGCCTGC------------AATGGAAAGTCA----------AGTA----ATTTTACTTTCATACCA----------------TTGATGTCTCAGTCTTTGGAGACAGTCACACAAactaagag--gttaagagtcacgctaaagatatacatctggtaagcatgtcagaattttaattcagactagtttggtttcaaaattcatatatactcttccctactCATATGT--CCCCTAATCAAGAGGCAGTATTTGGTTTAAGTTCTACTAATACAGCTTTGCATACTTTGAGACTTTTATCTGCCTTGAACATGTTGTGA--------------------------------------------------TACCTTC---------------------------------------------------------------------------------------------------------------------------------TATGA----ATGTTTATTAAAGATAGTCTCTGTGTCCATTTCTTA----------GTTCAGTGTAGTGAGCTTCAGAGGCACGAACACTCA---------TTTTGAAGTGCTGCCCAGAGCTGGCAGTCTCTGATTAAAGACCTAGATCATGTTGGAGAAAATCATATTTT-CCCACTATGCATTTTTGTTTGATAGGCAATGTCTGAAGGTGTCTGCGGGAGGTAATTATCCTGGGAAAATATAGGTCAGAAATACCCAGAAATGTGTTTCTTTAACTTGG-----TGACTCATTAGCAGAAAACAAACCACAGGAGTCAGCATACTTAGGGTTTTA s rn2.chr14 19417445 1773 + 107821284 CAGAT-GATGTGAGGAGATA------------------------AGAAC------TCTCAGAAGGTGGGCAGGCAGGATTTCTTATC-----------TAGACCCTGTTGCTTGCCTTCTGTCATTTCAGCATTTAAGGCTGAAGCACAGAAGTGCAGAGA-GCACAAAAC--------AGCAAACAAAATAACAGAGGAAATATAGACAGAGAGAAGCACATTCACTTGCTTTGTAGGCAAGCAGGATGTATTTATCTCTGAC----TGGTTGTGCTGTACTTACCCAGGATGTAATAAAATCCAGCCTAGAATGGGG------------TGGGGGAGAATGTCTAGTAAGCTCTACCCTCAGactataccacgcaccttccttc--atgttatatttattcctctcaagaatcat---aagaggctggtattagga-ctctactg-------agtaa---------tgaggatagaagagctttgtcggtgtgct-caagcgaggcacataagccgcagaatcaaatctccagaacagtttgggctcagtgaccatggctgtcccactgacccaGCATG------------GGCACTG------------AGGAAGAACACCTCCTTGCCGTTAGCTTCTCCCACGGGATTTCAGAAA-GGCTACATGGGAGAGTTTCTGCTATTACACTGTAGATCTG-TCTGACAAA----------------------------CCCAAAGTGATCCTTAGAGAACAGGTTT-ATG-TCAAATATTAGTACTATATTTTATGCCTCTAAGAACACTACTGTTTCT-AAAAACCTCATAGGAATGAAATTTTGAAAACTTTGCCCCAGACT---TTTTCTTAAAACACTTAAAAAGCTGCAGAGCTGG-GTTCTGTAGAATAGAC---ATGAAATTATATA-----GAAGTCTAGCACAGCCTGAGACGGGAATGCTTGTGAATCAGAGGAGTCGTGTACTTCCA-TATTATCAGTGCCTGTCACATAATAGGGGTTATTAATGGTCAAATAAGTGA-----AAAATAAACAGGCATGTGACATTTCC---TCCTAAGCCGTTCCGGACATGACTATGTGAGCTGAAAGGGTGGCTGGCATTGAGGTGTGAGGAGGAGGAAGG----CTGCCACCCAGCACTTCATCTAAG----CATGTTCATGTTGCCTCTCTTCGTTATCAGATGCATTCTGTGTATGTATATAAAACCATAT-GGTTAATCAAGTATCTTAATATATAGTCAAGCATATTGTACattaattaaatttttataataaGTATATCAGTTGATTAATTCTTACATTCCACT-AGAAATTGGAATGGAAACAAGGAAGTAATGCTTTATTAGATGCCTGCTAAAT-------AACAGAAAGTCA----------AGTA----ATTTTACTTTCATCCCA----------------CTGGTGTCTTAGTCTTTAGAGACAGTCACACAAactaagag--gggaagggccatgctaaagatatgcatctggtaagcatgtcagaattttaatccagactagtttggctttaaaattcatTTATACTCTTCTCTGATCATATGT--TCCCTAAGC-AGAGACAGAATTTGGTTTAGGTTCTACTAATATAGCATTGCA---GTGGAGACCTTTGTCTGCTGTGAACATGT-------------------------------------------------------GATTTTC---------------------------------------------------------------------------------------------------------------------------------TGTGA----GCGTTT-TTGAGGATAGTCTGT------------------------GTCCCGGGTACTGAGCCTCTGAGACACAAACACTCA---------TTCTGAAGAGCTGCTCAGAACTGGCAGTCTCTGATTAAAGACCTAGGTCATGTTGGAGAAAATCATATTTT-CCCACTATGCATTTTTGTCTGATAGGCAATGTCTGAAGGTGTCTGTGGGGGGTAATTATCCTGGGAAAATACAGGTCAGAAATACCCAGAAATGGGTTTCTTTAATTCCG-----TGACTCATTAGCAGAGTGCAAACCATAAGAGTCAGCATAC------TTTAA a score=17741.000000 s hg15.chr4_random 112569 194 + 1219494 TGAATCAATTAAGAGACCAATTAGAACTAGAGAAGCATTTTAAAGAGCATGATCAAAAAATATTCTTGAGATAAAAATATGTTAAAGAATT---TATGTAAATTTGTCAAGTAGTATCATTTGTCCAGATAATTCCTATAGATATATAACTGCTAATGATGATTGTAAATGAATATAAAAC--Taat----aataattaatat s mm3.chrUn_random 53669414 167 + 117911829 TGAGTCAGCTAGGAAGCCAATTAGTTTTAGAGAAACATTTT-----------------AATACTA-TGAGATAAAATTGTGCTAAGGAATTAGAACTGTAAATTGGCTAAGTA---------GTTCATATAATTACTACAGATTTCCa----taaataacaatttcaa--aaatataaaat---aatttcaaaaatttaatat s rn2.chr14 19419233 162 + 107821284 TGAGTCAGCTAGGAATCCAATTAGTTTTAGA--AACATTTT-----------------AATATTA-TGAGATAAAATTGTGCTAAGGAATTAGAAATGTAAATTGGTTAAGTA---------GTCCATATAACTCCTACAGATTCTC--------ATAACAATTTCAAG-aaatataaaataaaaatttcaaaaatttaa--- a score=9763.000000 s hg15.chr4_random 112763 66 + 1219494 taatgagctgttacaatgtgctgagcatacaataatcacttgacatgcattatctcattt------aaAACT s mm3.chrUn_random 53669964 72 + 117911829 TAATAAGCTCTTACAATGTGATAGACATATTTTATCAATGTGACATACATTATCTTATCTTTAATAACAAAt s rn2.chr14 19419702 72 + 107821284 TAATAGACTCTTACAATGTGATAGGCATATTTTACCAATGTGACATAGattattttatttttaatatcaaat a score=9384.000000 s hg15.chr4_random 112829 62 + 1219494 -----TGGAAGTTCTGTCAAACAATGAAAATATTCTTCTGAATGTTAATTAtgaccaaagctgggga s mm3.chrUn_random 53670227 65 + 117911829 TAATAACAAATTTCTATTGAAC--TGTGCCTGCCCTTCTGAATGGTAACTATGGCCAAAGCTGGGAA s rn2.chr14 19419763 65 + 107821284 taatatcaaatttttattGAAC--TGTGTCTGCCCTTCTGAATGGTAACTATGACCAAAGGTAGGAA a score=40684.000000 s hg15.chr4_random 112891 393 + 1219494 gcagttgctccagttagcagggcaagtatcttccttgttgatcccacacctggctggctt-acttatatatgttacctgccttgcctgggtaggcattttggtttTTTTTACACCTGACCTAAATCTTAAGTGCTTTTATTT-TACTACAACATGCAGGATAAATGTGACTAAATTGTCTTCCAACTCA-----------CAGAGCAGTATGTTGTTTAGACCATGTAACAACAAAATATGCTTCTTAATTAATTAAAGCAAAAT------AGATGCATTTTCAGGCCTCATGAAGATGGAATGTGATCCAAGACATTGTGATTGCTCTGGTATCTGCCAGCAGCTTCAAAGACTTAACGGGCACTGTAGCTTTCTTTAGTGACAGCTACCCTTACGGAGACACAGCTATTC------ s mm3.chrUn_random 53670292 384 + 117911829 TCAATTGCTAGTTTTAAGAAGGCAAATATTCTTCATATTTA-TCTATACCTGCCTGTTTTCACTTTTATATGTTATCTACCCTGTCTGGGTAGATATTTTGGCCTTTCACACA--TGTTC------ATTTGTGCATTTTTTTGTTGT----TGTTCAGAGTAGCTGTGATTAGATTGTTTTTTTCCTTA--------------TGC-TTAAATTAATACAAAC-CATAAGCACAAACTAAGATTTGTTGTTAGTGAAAGCAAAATTGGAAAAAATTCATTCTTAGGCCCCATGGAAGCAGGGTGCCCACCAAGACCTCGAAGTTTCTGTGTTGTATGCCTATGGCTTC-AAGACTTGGCAGGTACTGT-GTACCCTAGAATGGC-TCTACCCTTGGGAAGATA--GTTATTACCAAAt s rn2.chr14 19419995 406 + 107821284 TCCATTGCTAGTTTTTAGAGGGCAAATATTCTGCATATTTA-CCTATGCCTGTCTGGTTTCACTAGTATATGTTATCTACCCTGTCTGGGTGGATATTTTGGCCTTTCTTATG--TGTTCTAAATCATTAGTGCATTTTTTT-TTGT----TGTTCAGAGTAGCTGTGGTTAGATTGTCTTCTCCTGTAATATAGCATTCCATGGC-TTACATTACTGCAAAC-TGTAAGGATGAACTAAGATTTATTGTTAATGAGAGCAAGATTGGAATGAATGCACTCTCAGGCCTCATAGAGGCAGGGTGCCTGCCAAAACCTCGAAGTTGCTGTGTTGTATTCCTACAGCTTC-AAGACTTGGCAGGTATGGT-GTACCCTATAATGGCAGCTACCCTTAGGAAGACACAGTTACTACCAAAt a score=55626.000000 s hg15.chr4_random 113284 741 + 1219494 TCTG--TCCCTGCTTTAAG--------TGAGCCAGCTGTTACTAACTACCTCTTCCTCAG--TCTGATT-GTTCTATTT-----AGGAAGCCCATATTTGGCAAAGCTTTTGAGTCAGGGCATCTCATGGACTGTTGGCCAGGAAAAGAATCCATCTCTAGTCCAATCAGCTATGG-CAGGAGGGCAGGATGAAATGGCAT-AGGCATGATTAAAAAACCTTCTAAAAGGGAAGTGGGCCTGGAAGGCATTTTCCAACTCCCAGAAAGAGGTTTCCACTGTTAG-------ACACCTGTCCAGAATAAACTTCCTGACACAATGGTTATATTGAAAAACAAAGTTAAAATTAGATGACTATTTTATTAATTTATAATGAGCAGAGT--TCTTTCTCT---------AGTCAGATTATTCATAATCACTTTAGTATCTCCCCATAGAAAGATCAACATCAACATCAAAATCATAATCATATAATTTTGTG-TGGACACAGGT--GTTAGATGGCaaaaaaaaaaaaaaaaacaaaaaaCAACCCCAAACCTAACACATGGCTCATGACCGGGACATACAGGGACATATGTAGCTCATGATAGGGCTGGACGTGCCACTGGCCCTGGAATATGTGGAGTTCCTTGGCTACAACCTC-----CTGC------ATCTTTCTCACATTTGAGATGGCTTTACAAATGGTT--TGGTTCACTGAAAATGGCTCCTTTAGT-----GGGTGATGTTTGG---------CTAGA--------------CACTACT-----------AGTGTTGGTCTTTTTATTT-TTCCAAGAATGATGTAt s mm3.chrUn_random 53671192 713 + 117911829 ------TTTCTTCCTGAAATTCCAATTTGAATTTTCTGAGGTGGAATATGTCTGATTCAGCATTTAACTAGTCACATTTCAAAAAAGAAGCTAGTCTTGAGCATAGCTTTTGAGTTAGAGTAGTCCACAGAGTCCTGGCTAGAAAATG----TATCTGTAGTCCAACCTATTATGACCAAGGAGTCTGAGTAAGATAGTATAAGACATGAGTCGGACACCTTCTACCAGGAAAAAGGGGCAGACAGGCTTTTTAAAGATTCCAGGTAAGGGTTATGACTGTTAG--------------------------TTCTTGGCACAACTG-TATCTTAAGA---AGAACTTGAATCA---TACTG-TTTGTTAATCCGTAACGTTCAGACG--TCTCTTCCT---------ACTCAT-CTAAACATGGTCACTCCTGTGCCCCCCTGTAGATAGACCTCCATCAAATGCCACGCCATAACCACATGGCTCTGTG-TGAACATAGACTGCTTAGGTTGTAAAGG------------------------------TCAGCATGTAGCTTATG----------ACAGAGTCATGCGCAGCTCATGATATGGATGGACTTGCCATCAGGCTTAGAAGACACAGGACCCTTTAACTTCAAACTTCTATGTTGAAAGGAGACAGTTACCAGAGCCCGGACATC-TCAGAAATAATTCCCATTTTGCTCA------CCCATTTTGTTAGCAGGGTCAAGCTGAGTTCGTATTCCCAGA--------------TCCTACCCTGCCCCTCCAAATGTTTTC----TTGTCTATTAAGCCAGTAAAGAAT s rn2.chr14 19420935 769 + 107821284 caCCAATTTCTTCCTGAAATTCCAATTTGAATTTTCTGAGAGGGAATATGGCTGACTCAGCATTTAACTAGTCACATTTCATAGAAGAAGGCAGTCTGGGGCAGAGCTTTGGAATTAGAGCAGCCCATAGACTACTGGCTAGAAAGTG----TATCTCTAGTCCAACCCATTCTGATCAGGGAGACTCAGAAAGACAGTAGAAGACATGATTAGGACACCTTCTACCAGGAAAAAGGGACTGGGGGGCCTCTAAAAGATTCCAGATTTGGGTTATGATTGTTAGCCATCCGTGATTTGTCTCTAATAAGCTTCTTGACACAACTG-TATCTTAAAA---AGGATTTGAATCA---GACTATTTTGTCAATTTGCAATGTTCAGACAATTCTCTTCCTAGTCCAAGCACTCAT-CTACTCATAGTCACTCCTGTG-TCCTCTGTAGGAAGACCTACATTAAATGTCAACCTGTAATCACATAGTCCTGTGTTGAACCCGGACTGGTTAGATTGCAAAGG------------------------------TCAGCATGCAGCTTATG----------GCAAGGTCATGCAGAGCTCATGATGGGAATGGACTTGTCACTAGGCTTGGGGTACGTAGGATTCTTTAACATCAAACTT-----TTGTAAGGAGACAGTCACCAGAGCCCAGACATC-TCAAAAATATTTTTTATTTTACTCT------CCCATTTTGTTAGCTGGGTCAAGCTGAGTTCATCTTCCCAGGTTTGGGGACCCACCTCCTACTCTGCCCCTCCAAATGTCCTCTTAATTGTCT-TTAAGCCAGTAAAGGAT a score=70133.000000 s hg15.chr4_random 114343 981 + 1219494 TAAGAA-----TGGTGTATTAatcagggttttccagagaaaccgataaaggtatagttatatatagaaaga---------------cattgaatatatatagaaaggaattggct---cacttggt--------------ga-----------------tg-gaggctgacagattccaagatgtgcagtttgca-------------------atctggagacccaggaa-----tgcc----catggtgtagtcc--------taatctccaagctagcaggcttgagacccaggggagct--gatgtctcagttcaagtctaaaggcaggaaaaaatctaatgtccggctagaaaatcggcaggaggagttctcctttcttctcagatgatcagcttttttgttctagttaggccttcaattgattggatgatgcccactcacattggagagggcaatttgctttactcaatcaactgatctgaatgttaattttatcc-----agaaacaccctcacagacacatccagaatcatatctg-ac---------------cctggtgtccagtcaagtcgacat--gcaaaattaaccatcacaGATGGTGTTTAATGTTTTAATTTATAGCTAAATAAATGCtaatttttttcaaaataaaaa------tatctttttttactataaaagtaatatatGGCCTTCCTTGGTACTTCCAGTCACAAGCATTTGCCCAGCCCAGCCCAGCTGAGTCTCTGGTTGTTTATAGTGCCATTGTGGTTG-TGGGACCCGAGGTATAGTGCATGTGCAAATTTTTGTCCCCCAGGACTGTGACACAACCACAGCCAAGGCCAGTGTTCTAGGGCCTACCTGGGATGGCAGGACCAATATGGAACTCTTAAAGTGTATGAAGCAGAATCCAGAATCTGCATTTGAAGAAAAGGTCTATTAAGATTTTCTCACCCACTTCAAAAAAAAAAAAAAGGTTTTTCTCACCCACATCCAGTCTTGTGGGGTGgtggttctcaaagtgcggtctgtgaactcacggaggtccctgagattcttttgtggggcctgaggtcaaaattgcttttata s mm3.chrUn_random 53671905 954 + 117911829 GTAGAACCTGCTGTTATCTGAACTAAGGTGCCC--------------AAGTTGTAAAAATATATAACCAAA-GCCTGCCCAGCCCTTATTAACTACAT-------GCAGCTGATCTGATACTTTGTCCCTT-ATCAACTTGAGCTCTGGACCAAATGTCTG-GAGACTGA---ATTAAAGGCTTTGTGTTTCACACCAAGTGTGTAGTGGGATGAGTTAAGAGCCTTCAAACCAGCTGCTGGGACAAGGCACAGTCTTCAACAGATACTCCCCTGCTTAACC--CTTAATATCCAAGTATGTTTGGATGACCCTGCCGCACACCCAAGCC------ACATCtcat-----------------acaagaggaatt-----------tcagatggctaac-tttttgttcaaattagggcttctgttgattggggaaaacccatgcaaggagggtagggtgtttgactttactcagtaagctgacttaactgttaattttatcctatatgggaacacttttaaagacacacctagaataatacctt-accaaatgtttgagcagccttgtacctatttaagt---tat--ccaaagttaaccattgcaGATGACATTTAACTTTTT--TCCCTAGCTAAAGGtttaaaattttttaaaaaaattaaaaaataaGTGTATTCTTTTGCAATGTTAATAATATCTA---TGTCTTGATAGTTCTTAGCTCAGG---------AGCTTAGTTCAGCAAAGGCTGTGGTTATC-TCCTTGCCATTGTGCTTGTTGGAACCTGAGAGATA-TGCACTGG--------TAACCTATAGGACTGCATTGTGAC--------CAGAAAGCACTTGAGGGTTGACTTGTAGTAACCAAACCAATATAAAACTCTAGGAATAGT------------TAGAACATGCCCAGAAAGTAGAG--CCACTGACG---------------------------------TTTTCTTACCCACAGCTTGTACTGTGGGGGagccgttcttctagagtggcttgtgaataaatgaggatccttgatcttcctttg-gggtgtggaactcaaaataatttttata s rn2.chr14 19421704 932 + 107821284 GTAGAAGCTGCTGTTCTCTGAACTATGGTACCT--------------AAGTTGTAAAGACATATAACCCACTGCCTGGCAAGCCCTCATTAACTGCAT-------GCAACTGATCTCATCCTTTGTCCCCTAACCAAC--GAGCTCTGGGCCAAATGTCTGTGGGACCGA---ATTAAAGGCTTTGTATTCTGGACCAAGTGACTAGTGGAATGAGTTAAGGGCCTTGAAACCAGGTGCCAGGACAAGGTGCAGTCTCCAACAGATACTCCCTTGCTTATCC--TTTAATCTCAAAATATGCTTGGATGACCCGGCAGCTcacccaag------------ctcat-----------------aaaagagaaagt-----------tcagatggctggcttttttgttcaaattagggcttctgttgattgggtaaaacccatgcaagaagggtagggtgtttggctttcctcagtaagctgtcttaactgttaattttatcctatctgggaacacttttaaagacacacccagaataataccttaaccaaatgtttgagcagcttggtacccatttaggt---tatagccaaagttaaccatTGTAGATGACATTTAACTTTTT-ATTTCTAGCTAAAGATTTAACa---tttaaaaaaattaaaaattaaGTGTATTCCTTTGAGCTG------------------------TAATCC-------------------AGCTTGGTTCAGCAAAGGCTGTGATTATTATACTTACCGTTGTGCTTG-TGGAGCCTGAGAGGTC-TTCATGGG--------TGTCCTCGAGGACTGCATTGTGACCATAGGAACAGAAAGCATTTGAGGGTTCACTTGTAGTAACCAAACCAATATGAAACCCTACGAATGGTTAG---------TAGAACCTGCTGGGAAAGTAGAG-TCCATGGACA---------------------------------TTTTCTTACCCACAACCTGGACTTTGGGGGAACCAttcttctagtgtggtttgtgaacaaatgagggtccttgatcctcttttg-gggtatggaactcaaaattatttttata a score=12516.000000 s hg15.chr4_random 123218 253 + 1219494 ----------------------actaagaagttatttgcgctttttat-tcttattctttcatgattgcatagcgg---ttttccagaggctacatgatgtgtgacacaagagaatgagtgcagaagcagatatgagaatctacctatcttctatgtagtcagacagtaaagagggttacaaatatgtaaaaacagtgccacaattcttaccaaatttttgtttttttgtaattttgcttttgttttgaaaatatgtaatttttcatgtagtttatgtt s mm3.chrUn_random 53672859 187 + 117911829 ----------------------acttagatgtcaacttccaatattgc-tctaattctctgatggttccatagtggaa-ttttctagaggACAAACATTGCACAAAATAACAGAATGCCTGCAGACGTAAATGTGAGGGTT------------------TAAGAC-----------TCATAAAAACATACAACTAGTATC---------------------------------TCTGTTGTTG------ACATTTTTGATTTGTGAAATAATTGGTTTT s rn2.chr14 19422636 218 + 107821284 atattttaatataataataatattttagatgtcattttcccgtattacttctcattctctgatggttacatagtggaatttttccagaggACGAACACTGCACAAAATAACACAATGCCCTTAGACACCGATGCAAGGGTTTA--------------AGTAAGAC-----------TCATAAACACATACAAATAGTCTC---------------------------------TCTGTTGTTGTT---AATAATTTTGTTTTATGAAATAATTGAtttt a score=2666.000000 s hg15.chr4_random 124512 89 + 1219494 aagcccttggggtccttgatcatttttaag-agcgtaaaagcatcctgagacaagaacatttgagaaccTATGTAATAGAATTTTGTTTT s mm3.chrUn_random 53673118 90 + 117911829 AATTCTATGGAGCCCTTGACAATTTTTCAGTTTTATAAAGGGGACTTTTGACCAACATATTTGTGAACTTATGTAATTGtcttttctttt a score=7088.000000 s hg15.chr4_random 124892 174 + 1219494 AAAGATGAAATAATACATTAGATGTCATTTAAAATATAGCACATGCTGATTCTGTGGTAATGCGTATGTGGTAAAATAGACTAGAATACATTATTTTAGATGTTTAAGATTATTTTCAACTGTATGCAATTTAGTCCTTGAAA--ATAATTTCTCCC-ATTTCAAAGAAGGATAAAA s mm3.chrUn_random 41419367 172 + 117911829 aaaaataaaa----aCATTAGGCATAATTTGAAATATAATATAGTCTGATGTGTTGGTAATGTTTATATGGTAAAATAAATTAGAATAAGCTCCTTTAGACATTTAGGAATGTTTTCAATTTTAGATAATCT-GCCCATGAATCTATAATTTCTCCTGATTTTAAAGTAGAATAAAA a score=157407.000000 s hg15.chr4_random 125075 1505 + 1219494 ACCTCAGGATGAGCTTA---------------------TCTCTATTTTCTCAGAACTCTTTCAAATGATTTCCTTGTAGAGAAAATTTTTGCAGAGAAGAGGATTGAAAATTAGACATGAGGTCAGAACAAAATGATAATGCAAATCTGAAGATACAATTCTGGGAACCTCCGTTCTGGGATTTCTCATGTTGAAACTCATATAATTGCATTCATTCCTATTAGGTTGTTGCCATGTAATTGATAGTTACATTGGAAT-GCACAAATTTAATTAATAAATTCTttcagtcatttataaacacatactggat----ttttgttagtcagtctgctcagatgctgagattacaaaggt-----gaatagtcatggcctctttcctcaaggaacttacagtttgtgagagaatcagacatataaagaacaaGTTAAGGTTTGGCCTGACAAGTGTTATAGTAGA--GATGTGTCAAGAACTATACTACTATATAAAGTTTAAAAGTCAGtttatttactcaaccagaactcattaagttctaactttgtgcagagtatagtggtagggggtataagatcatggcaaataattttgcctcctagaagtttacactctagtcgagaagacaattatgcacacacataaacaCA-----------ACCCAAATCCACAGTGGTAGTTCAAGGCTAAGTGCTAATTATTTATAGTAAATAGAGCCAT-------------------AGGAT--TTTACAGAAGAGATCTTTAGAGGCAGGAACAGTTGCAAAGCCTAATTGCAAATGACCTTGAATGAACCTTGAAGAGGAGATAGAACTACAGGTCAGAGAGGAGGGAGACAGTGTCCGAGGGTGGGGGGCAGTAAAATAATATACACTTTTTGTTCTCTtcagacctgaagccactttttaaatacca------agtatttccttttctgaagttaaattcatggcaagacccatttgcccatataattta--------aacaatacattacattgaataaaaatatgttcttattataacttaaaggagaaagaaaagtgtaatagaatgtacattttaatatataacgcttgaacatgactacagaagtagccaaaatgaaatagtcagatgtttgcacctaCTTGTAATGACCAAGGCAGAACTTAGCAGAAGCTAAATTAAAAGCCATGCTGAATACAAAGTAGAAGAAAATGAAAGAGCAGAGGTACAGAGGATACTTG----------AACCA--AAACTATTGCTAGGATAAGTAATGACAGTCTAGACCTGTCTGTATATGATATGAGAAGGAGATAAATAACCTTAACTGCAGAGGGGATAACATGTCAAGACAAATTACAGATTGTTGAAGTGAGAAAATGAGGAAGTATAATATTCTTGCAAATGACCTGGACCTTATTTATGAGTGTGTGTTAAAATAATTCTGTGTGTTGCATAGGATGAAGACAAGACAGAATATTTCAAAAAACAAATCCTATCTTGAAACCACATGAGGAGGTATAC-ATTCTGTCTTGAGTATCTCAAAATACCACTTAG-CTTAGCTGTTGAAAAAAGAAATAGg s mm3.chrUn_random 41419770 1427 + 117911829 ATCTCAGAGTGGAATCAATCTTCTGTTTTGAAAAGTCCCCTCTTTTCTTTCAGACCTCTTTAAGAGAACCCCAGTGTGGA-AGCCTTTCGGCATAGAAGAGGATGGAATGGCAGACATGAGGTCAGAATGCAAGGATGATGGGAATCTGATGATAAAGTTCTGGGAACTTTTATCCTAAGGTTTACCAT-TTGCAGTACATTTAATTGCATTCATTATTATTAAGCTGAT-TAATAACGATCATAGTTACACGAGACTCTCCCTCATGAATTTAATGCATTTATTTAGTAATTTAT-AACACCCTCTGGATGACCTGTTGACAGGCCATCTGAGCAGATGCTGTCGTTATAAAGAT-----GAGTAAGCATGGTC-----TTACTTGGGGCTACCAGAGTATGAGAAAATTAGGCATGGAA--AATATCTT---GTTTGGTTTATCAGGTGTTGCAGTAGATAGATGTGCCAACAACTAGACCCCCATATAAAGCTTAAAGGTTA----ATTTATTCAACCAGAATCTATTGAGAATGAACTATATGTAAAATGTAGCG----------TAAGATCATGGCAAATAATTTTG-CTTCTAGAGACATACAGCATAGTTGATGATGTAATTATGCATATACACGTTCACA------------CCCTAGTTCAAA---GCAGTGTGAAATTAGGTGTTAATTA-CTATGGCAAGTAGAGCCATGTTTTTTAGAGGCCCTTTCAGGGTCCTTCAGAGAGGAGAGTTTCATAGACAGGACTAAAT--AAAACCTATTTGTAAG-------GCATGGA----GAAGCTAAGACTGA----------AGAAGGATCGAAAAAA-------------------AGTGAAAAAAAA-------TTTGGTCCTTTTTGACCCAAAGTCACTCTTTTCATAACATTTCAAAACATTTTCTCCCCTAAAACTAAATCC-TGGTATAACCCA-----CCACGTAATGCATATATTACAAAACTAAATTGT-----------------ATTTAGTGCAGTTTAGAAGAGAATGAAAGGTTTCATAAAATGCATATTTCAATCCGTAATGCTTGAACA-------GCAGGTGGTCAAGGTT--ATAGCCAGACATTTGCAC-----TGAACAAAGTTAGACAGAATCAAGAAG----CAAATTATACACTGGGC---------------------TGAAAGATCAGAGGTGCAGCAGAGACTAGGAAAAAGCCCAACCAACAGACTGCTACTACAGTAAATAAGGGCAGGCTGGAGCAGGCTCGGAATAAT----GAAAGAT-GAAATGACCTGACCTGTA---AGGATACCATGTCTAGACAGATTATAGATTGCAGGAGGGCGAAAATGAGGAAGTAAGGACATCTTACAAAGAACTGGGTCTTATTTTGTGAACATGTGTTTAAATAATTCCCTGTGTTCTGAGGGATGGAGGTGAGAC--GGTATTCCAGAAAGCTCCTTTTAGCTTGAAACCACATGTTGAAGAGTACTATTCTGACTCTGATACCTGAGAGAACGACGGAAACTTTATTTTTTTGAAAGTTAGCAGG s rn2.chr14 19423581 1436 + 107821284 ATCTCAGATTGGAATCAATTTTGTGTTTTTTAAATGCCCCTCTTTTATTTCAGACCTCTTTAAAAGAACTCTACTGTGGA-AGCCTTTCTGCATAGAAGAGGATGGAATGCCAGACGGGAGGTCAGAATACAAAGAGGGTGGGAATCTGATGATAAAATTTTGGGAGCTTTTATCCTAAGGTTTCTTAT-TTGCAGTGAATTTAATT-CATTCATTACCATTAAGTTGAT-TGATAACAATCATAGTTAAACGAGACTCTCCCTCATGAATTCAATGCATTTATTTAGTCATTTAT-AAAACCCTCTGGATGACCTGTTGACAAGCCATTTGATGAGATGCTGCCATTATAAAGATGAGTAGAGTAAGCCTGGTC-CCATCCATCTGGAGCTACCAGTGTATGAGAAGATTAGGCATGGAA--AATATCT--------------TCA---GTTGCAGTAGACCAACGTGCCAAGAACTAGACCACCATATAAAGCTTAAAGGCTA----ATTTACTCAACCAGAATGTATTGAGAATGGGCCTTATGTAAAGTGTAGCA----------TAAGATCACAGCAA-------TG-CTTCTAGAGACACACAGCACAGTTGGTGATGTAATTATGCACATATCCGCTCATATGTAATCAGTGGCTGTAGTTCAGA---GCAGTGTAAAATTATGTGTTGATTA-CTGTAGCAAGTAGAGCAATGTTTCTTAGAGGCCCTTTCAGGGTCCTTCAGAGAGGAGACTTCCATAGACAGACCTAAAT--AAAACCCATCTGTAAA-------GCATGCA----GAAGTTGAGACTGA----------AAAGGGGTAGGAAAAA-------------------AGTAAAAAAAAA-------TTT----CTTTTTGACCCAAAGTCACTCTTTTCACATCATTCCATAACATGTTCTATCCTGAAACTAAATTC-TGGTATAACACA-----CCATGTAATGCATATGTTAGAAAACTACATTATATCACATAAAGATACA-ATTCCATACACTTTAGAAGAGAATGAAAGGTTTTATAGAATGCATATTTCAATCTATAATGCTTGAACA-------GCAGGTGGCCAAAGTT--ATAG-CAGACATTTGCAC-----TGAACCAAGTTAGACAGAGTCGAGAAG----CAAATTACATGCTGTGT---------------------TGAAAGATCAGAGGTGCAGCAGAGACTAGGGAAAAGCCCGACCACCAAACTGCTACTGCGGTAAATAACGGC-GGCTGGAGCAGTCTGTGAATAAT----GAAAGATGGAAATGGTCTTACCTGTA---GGGATACCATGTCTAGACAAATTATAGATTGTTGGAGGGTGAAAATGAGGAAGCAAGAA-GTCTTGCAAAGAACTTGCTCTTATTTTGTGAACATATGTTTAAATAATTCCCTGTGTTCTGAGGGATGGAGGGGAGACAGGGTATTCCAGAAAGCATCTTTTACCTTGAAATCACATGTTGAAGTGCACTATTCTGATTCTGATACCTGAGAGAACCACAGAGACTGTA--TTTTTGAAAGTCAGCAGG a score=15639.000000 s hg15.chr4_random 126888 193 + 1219494 AAAGAAATAGCAGTACAGGGGACAACAGAGAAGTTTCGTGGCAGATCTCTGGGAGTGGAAG-ATTGAAAAGATAGGAAA----AGACTGAAGAA-CAAGAGGCAATTTCAA--GATTTCTTATCAT--------TATGCCACAAAATTAAAATAATAGA--CATTAATAAAATGCGATGAGATCATTACATTTCACGTCTATCAATTACAA s mm3.chrUn_random 41421217 185 + 117911829 AAAGAA-----AGTTCAGT-----AAAGAGAAATTTCATGTTAGA--TGTGCAAATTATAGCTTCAAAAAGGTAGAAAATGTGAGATAAAAAAACCAATGGACAATTACAAATAACTTCAAATTATAAATTTCACACATCACAAATTTAAGCCAATAGGTTTATTAATAATAT--GATGAGGGTTCTGCATTT------------TTACGG s rn2.chr14 19425037 180 + 107821284 AAAGA---------TCAGG-----AAAGAGAAATTTTGTGTTAGA--TGTGCAAATGATAGGATCAAAAGGGTAGAAAATGTGAGATCAAAAAA-CAATAGGCAATTACAAATAACTTTGAATAATAAATTTCACATGTCACAAATTTAAGCCAGTGGGATTATTAGTAATAT--GACGAGGACACTTCATTT------------TTATGG a score=7028.000000 s hg15.chr4_random 127309 55 + 1219494 CTATCAATTACTATTAATGGTGTCTCAATTTTTTACTGAGAAGTATTtgcatcag s mm3.chrUn_random 41421402 54 + 117911829 ATATCAAGGAACACTAACAGTGTCTC-TAGTTTTGCTAAGAAATGTCTGCCTGAG s rn2.chr14 19425217 55 + 107821284 GTATCAAAGAACACTAACATTGTCTCTTAATTTTTCTAAGAAATGTTTGCCTGAG a score=99030.000000 s hg15.chr4_random 128360 985 + 1219494 TAGAAATGAAATGTCTGCTAGAATT-TTGTTTTCTGAAATTTTGTAGTTTGC-AATGATGTGAATATTTAAATCATGTCTAAGTTAGGAAAGAACCAAGAATGTACCTAACTTTTCTGAGGACAACTGACCACATTTGTA--------CTCAAGTTCTTGGGTCTTTTTTCTCCTTTAATGTCAGGTCTCTTACTGTATACTGACTGTAGTGTATTATGGAAATTTGAAGTTTAAATGTT-CAGTATCTTCCAAAGGATATTGTATCCTTTCATAGATAGATGTTATTTTCCTGATTTTCATGGAGAAAGAAGTTATTTTCATAGCCCAGCATAAATACATACCAATCATCCTTTCTTGCAAGAG--TTGGTGCTTTTTCTTGAGTCCCAGGCCCAAGAAATTTTCTGAGACTTGGTAATTTCCTGGAAAAAAGTATA---------GGGTGATTTcaaggacagaga---ttacatcttatatcttttgtatttccagctatagtgtctagcacataataggcacacagtgagtgtcttttgaatgaaagaatGAGGGACAAATACATGTGTAAAGAGAATGGTGACTGCGCTGTGATTTTTCTTGGTTTC-----TTTTCACTGTC-----TTTTTCTGCTGATGTTGTCTGGCCAGCAGAGGGCATTCAAGGTCCACCTTACAATTAGGGACC---------------TTAGGGAAAGGAGACAGTTTCTAGCTACAGAAATTCAACTGTCAGAAAAGGAAACAGATGAATTTGAAATTGTCAAGACGGCTTAATTTAAGTCTTCCAGTATAAGGTTAATTT-TATAGTGCTAACTAATCTTGACACCATGTGAATAATACATTAGAGGAAAGTGTCTATTTTTATTTGATTTTGAAATGTGGAAATACCAGAAAGTTTAAAGGAGAAAATAAAAATTGCCCAGAACTAACTTTTGCTCACATTTGGCTGTATATCTATTTTTATTTTTAGATACATCATATACagaatgtaagctcctcaaggaatgggatt s mm3.chrUn_random 41421482 918 + 117911829 TAGGACTAGAGAGTTTGCTGAGATTCTTGTCTAGGGAAATCTTGAAGTTTTCTAATGATATGA--ACCTAAGCCATTTCTAAGATAAAAA-----TACACATTTACCTGATTTCTCTGGAGACAGTTGATCACATTTATCTGCGACTTCTCAAGTT-TTGGATCAGTTTTCTCCTTTAGTGTCAGGTCT-TTACTGAATATAGACTCTAGTAGTTTATGGAAACTGGAAGTTGAATTATTGCAGTGCTTTT--CACAGTGTTG----------TGGAAAGGTG----CTTCCTGTTGCTTATGGATGCATAAGCTATCTT------------------CATACCATGTGCCCTTTCATGGCAGAGACTTACTCCTTTTTCTTTCAGTATAGTGCTAAGAAATTTATT------------TTTCATGAAGAAAACTATA---------GGGT-ATGTCAAGAAAAATGA---TTTCATCTTATTTCTTTTGCAT------------GGTCTATCATATAACATGTATATGATAGACGTCTTTGGATT----GGTCGAGGGACAGACTAAGGTTTAGATTTGGTGGCTGCTGTGCTG-GTTCGTTCTTGGCCTTTCACTCTTTCACTGGCCAGGTTTTGTTGGCAGATATT-TCTGGCCAGCAGGGGGCGTCCAAGGTCCATCTTTCGATCAAGGAACGACCAAAAAAAAAAATCTGGCAGAGGCAAC-------TGCTAGAGAAATAC-ACTTTCAGGAAAGGGGAAA-------TTGAACTTGGCAAGAGGGCTTGCTTTAAACCTTTAAATAAAGTATTGATTTCTGTAATGCTAA----TTTTTATACCATGTGAGTAGTATATTAAAG-----TCCTGGCTTTTACTTCTTTGTGACATAAAGAACTTCAGGAATGTTTAAAGAAGAAAATACAGATTACTCAGAACCAACTTAAACTTGGATATA--T------CTAATTTTATTTTTAGATACATAATATGTGGAATGTAAGCTTCTCAGAGaattaaatt s rn2.chr14 19425545 923 + 107821284 TAGGACTAGAGAATCTGCCAGGATTTCTGTCCAGGGAAGTCTTGTTGTCTTCTGATGACATGA--ACCTTAGCCATGTCTAAGATAAAAA-----TACAAATTCACCT----------GGGACAGCTGATCACATTTATCTGTGACTTCTCAAGTT-TTGGATTAGTTTTCTCCATTAGTGTTAGGTCT-TTTCCGTATGCAGACTATAGTAGTTTATGGAAAC------TTGAACTATTGCAGTACTTTGGAGAAAGTGCTG-----------GGAAAAGTG----CTTCCTGTTGTTCATGCATGCATAAGCTATTCTCACCATCCAGCATGGATACATACCAAGGGCCCTTTCGTGGCAGAG--TTACTCCTTTTCCTTGCAGTATAGTGTTAAGAAATTTATT------------TTTAACGAAGAAAAATATCAAGAAAAATGGGT-ATATCAAGAAAAATGATCTTTTTATAGTATTTC-TTTGCAT------------GGTCTATCAGA-AACAAGTATATAATAAACATCTTTTGATT----GGTTGATGGACAGACT--TGTACAGATTGGGTGGCTTCTGTGCTG-GATGTTTCCTGGC--------CTTTCATTGGCTGGGTTTTGTTTGCAGATATT-TTTGGCCAGCAGGGGGCGTCCAAGGTCCATATTTGGATCAAAGAACAAC--AACAACCAAACCGGGCCAAGGCAAC-------TGCTAGAGAAATACAACTCTCAGGAAGGGGGACA-------TTGAACTCGGCAAGA-GGCTTGCTTTGTGTCTTTAAATACAGTATTGATTTCTATGGTGCTAA-----GTTTATACCGTGGGAGTAGGATATTAGAGGAAAATTCTGGGTTTTG----TTTGTGACATAAAGAACTTCAGAAATGTTTAAAGAGGAAAATAAAGATTACCCAGAACCAACTTAAACTCAAATTCA--TATATCGCTAATTTTATTTTTAAATGCATAATATATGGAATGTAAGCTTCTCAGAGAATTAAAGT a score=27291.000000 s hg15.chr4_random 130141 303 + 1219494 ACTTACAGTGCAATAAATAATAATTATAGTCAATCTTTATTTAATTTTTATGACATGCTAGAGAGTTTGTCAAGTTTGTTTTCCAAGTAAATGCTCTTACTTAATGTTCTTTGCAATGTCACCAGGGTGTTGAAGCAGACAAGGAGAGGATTGGCACCTGATTGAATATGATGGGCAGGAGAAGAGGGAAGCATAAAGGGTCACGATGGTTATGAGCTTTGGTAATGTGGAATGTGGTAGAACCATTAACAAAAATAAGGATG---AAGAAAGAGAAACTTGGGGGAAGGGGAAGAGAATTGCATt s mm3.chrUn_random 117488817 284 + 117911829 ATTTGTGATGTAATGAATTATA---ATGGTCAAT-GCTATTGCATTCCTAATGTGTGTTAGAGAGGGTGGCAAG--TAGTCTACAAATAA---CTAATAC-CGAGATTCCTTACAGTTTTGTCAGAGAGTTGATGTAGAC----ATAAAATTCACATCTGGCTGTATGTGATCATG-GGGAAAGAGGGCAGGATAAAGGCTCCTGATGGCTGTACATCTTGGGGTCATGAACTGTGCTAGAATAGTTAACACAAATAATGAATTACAGAAAAGAGGAGTATGAGGGAG-------ACCATTTCATT s rn2.chr14 19431275 270 + 107821284 ATTTGTGACATAATGAATTATA---ATGGTCAGT-GTTATTACATTCCTAATGTGTGTTAGAGAGGTTGGCAAG--TAGTGTACAAATAA---CTAGTGC-CCATATTCCTTACAGT-----------------GTAGAC----ATAGCATTCACATCTGA-TGTACGTGATCATGAGGGGAAGAGGGCAGGATAA-GGCTCCTGATGGCTGCAAACCTTGGGGTCATAAGGTGTGGTGGAATAGTTAACACAAGTAAGACATTACAGCAAAAAGGAGTATGAGGGAGGG---AGACCATTTCACT a score=111927.000000 s hg15.chr4_random 182889 1526 + 1219494 CCCCTCATCCCCATGCTGGGGCCTTGGCAGCCCTCAGGC-GTcctgaggagcccaggggggatctaacccttccaggggtgcaggagggcttcctggaggagatggctgggctgttcttggcggctaaagaagagcaggccaagacggtcagggtgggacaggcattctgtgctgaggcacccttgtg---------------ggagggcactgggggggcacgg----------------ggacagagcagagcctggtctcctggagtggcacc-tgtggggcaggaggcatgaggaggggCACAGGCTCCCAGCCACCCCTGGG-GGCTCCTGGCTGGGCTGCACTCCTGCCCAAACAGCGAGGGAGATCCCTGGAAGGTCCCTCCTGGCGAGGCCCAACTGGCCTGGGCTCAGGCAGCTCCCCTGAGGCCGAATGCCCCATGGCCAGCCCCCCCGACACACTGGGGGAGTGCATG-GGGCAGGGGCAGAATGGCACCTGAGGC--------ATGCAGTTGTGGTCCCTCTGCCCCCCGAGGCCTGGCGCTTAGGGCTGGCTGGTGGGGGGCAGGGGACGTGGGGGCGGTGGAATTCCCCTCCTGGGCACTGGCGGGCCTTGCCGCT----------GGTGCTGTAAGTTTCCCAAA--GACACCTG------CACTTCACCTT---------CTCCCT--------TCCCTCCCAGCTACGAAGGCAGGGGCGGAC----CTCCAAGACCGCGGCAGGCGGGGGTCC-------TGTGACCTGGAACCAGGAAGGGTGCCTCCTCGGTCATGAAAAGGAGGAATGTGCCTCCTCGCAGGA--TTTGTATTTTATT---TCCTGCAATTGAAACAATATCTGGTGTGAGGCATCTAATTACCGCTCTTTCCTAGAAATTGAGCGATAACACATCCTGTCGATACAAAGCTTTTGTTAGAGTCAAACACAGTTTCCCAGGGCAATTCCAATGAACACTGCACTCAAAAGTACTTTGGTTTTTAAATAGTTTCTCTAAGTATAATACC-GAGCCTGATGCAATCTACTTCATCTTTTGTTCTGGCTCTATTTCGAAAGTACCTTTGTACTCCTGTGTTCCTGCATAACAATAGCTGATAGTTCCTGCTCACTTGAAGAAGATCCCACCCAATtagaatttttagaagtgggagagcctttagagaaatcagagccaacccactcatttgtcagcaagataaactgagtcc-tggggtgaGTCCCTCAGCGCGTCAGAAGGTTATAGA-GCACCAGACTAAGGTAAGAGCCAGGAGGTCAGGGGCTGGGCAGAGGGAAGTAAGGAAAGGGATGCGGGAGGCTGGTAGCTGGCAGAGGAACAGGTGATGGTCGGCGTTCCAATTCCACTGTGCCTTGATGCCATCAGCaccccaaccctgaccctaatcctcaccctacctaaccccatcagcacccaaccctactccaaccctaacccaaccccatcaacatcccaaccctagccctgaccccaactccaaccACCTTCCAACCAGAGAAAAGGCAAATACATCCCTGAAGGACGTCACACTTTGCAGAGAGCGCTCTCACGTCCTTTGTCGt----- s mm3.chr5 33541857 1287 + 149719773 CCCCTGTCCCCCACAGCAGGGCCTTGCCAACTCCTAGGG-ATCCTGAGGAGCAAGGAGGTAGCCGGATCCACCAGGAAGTAGAGAAGGAATTTCTAGT----------------------------GGGAGGAAGTAGGCTATGGTAATGTTGGTGGGAAGGGTGGTGGGCTCAGAGGTGTTGATGTG---------------TGAGGGCA---GAGCAATCCAGTTAGGCATCTATTAGGGTACAGAGCAAGACCATGAAGGCTGA---GGCAGCATGTGCATCA--AGGCCTGCTGCAGGGGA---GTGCTGAGCGTCTCATGGATGTCCGCTTGAAGGGACGGAT-------------GTCAGGG-------TGCAAAG-CCCTCTGGGAGAAGT----CTGCACTGAACTCA---------------GCACAATA-TCTGTGGCCAGACCTCT------------------CCTA-AGGCCAGGATGGGATGACATCCAGGACTCCTAAGAACACAG-TGGGGTCTTTCTGTCCCCAG-----------------------GGTGGGGCTCTGGAAATGTTG------------TCCCCTTCTGAACACAAACTGTCCTTTCACCCACACAAG---ACTGCCACAACTATCCAAGACTGAAGTCTAGAGGTTCACTCTCCATCAATGGGCGGCTCCCTGGTACTGCTCACTTCCCA----GGAGGGAAGGGCTGACTAAACTCCATGGCTAC-----ACAGACTTCCTTGTGAGTATGGGCTGG--CCTGACAGGGAGCCTCCTGGGTAACAGGAATGAGGCA--------CTGGTGGGAGGCATGCATTTTTTT-CCTTCAGTAATTGAAACAATATCTAGAATGAGGCATCTAATTA-CATTCCTTCCTAGAAATTGAACTATAACATGTCCTGTCGATACAAACGCTTTGTTCAAGTCAAACACTG-CTCCCAGGGCA----TGGTG------------AGAGGGGCTTTGGTTTTTAAATAGTTTCTCTAAGTATAATCCCAGCACCTGACAT-ATCTGTTTAAGCCTTTGT------TCCCTCCCGGAGGTATCTTTGTGCGCCTGTGTTCCTGCATAACAATACCTTATAATTCAAGCTCATCTCAAGA-----CTTGCTGGTTAGCGCTTCCCAAGCCCAGAGGGACTTAGGAGACCTTAGAACCAGTCTACTCATTTGTCAACTGAATAAACAGAGTTTCCGGAGACAGC--------------AAAGGCCACAGTCTCTCCAG--TCAGGTAAGATCT-GGGGTTCTAGGCTTGGGTGGAAGAGAACACTGGTGGAGACAAGGGAAGC----------------------------------------ATCCATTG------------ATCAG---------CCTAGGTCCAAGCCTGGTGGCACCTTCTGCCATCAGCACCCAGCACT----------------GACCCCACT--C------ACTCTAAGCTTCACCCCAGCTCCAGCCCCCTTCTAAGCAGA--------------AGCCCTGGGG---------CTCTACAG---GTGCTCTC--------TGTC-GCCTCT s rn2.chr14 29874908 1274 - 107821284 ACCTTGCTTCCCCC-------------CACCCCCCACGGCATCCTGAGGAGCAAGGAGGTAGCCAGATGCACCGGCAGGTACAGAAGGGATTTCTAGT--------CTAAG---------------AGTGGGAAGTAGGTGGTGGAAATG---GTGGGAAGGGTGGTGGGCTCAGAGGTGTGGAGGTGGGAGTCAAAGGGGAATGAGAGCA---GAGCAATACAGTTAGG-----------ACACAGGGCAAGACCATGAAGGCTG----GGCATCGTGTACATCA--AGGCCTGCTGCAGGGGA---GTGCTGGGCACCTCATGGATGGCCATCTGAAGGGATGG-----------------CAGGG-------TGCAAAG-CCCTCTGAGAGAAGT----CTGCATTGAACTCA---------------GCACAACG-TCTGTGGCCAGACCTCT------------------CCTGCAGGCCAGGGTGGGATGACACCGAGGTCTCCTACGAACACAG-TGTGGTCCTTCTGT--------------------------------GGGACTCTGGAACTGTCG------------CTCCTTTCTGAACACCAACTGTCCTTGCACCCATACTATTATACTGCCAGGACTATCCAACACTGAAGCCTAGAGGTTCACTCAACATCAGTAGGTGAGTCCCTGGTACTGCTCACTTCCCG----GGAGGGCAGGGCTGACCAAACTCCATGACTGC-----ACAGACTTCCTTGTGAGTATGGGCTGG--CCTGACAGAGAGCCT---GGGTAACAAGAATAAGGCA--------CTGGTGGGAGGTATGCATTTTTTTTCCTTCTGTAATTGAAACAATATCTAGAATGAGGCATCTAATTA-CATTCTTTCCTAGAAATTGAACTATAACATGTCCTGTCGATACAAACTCTTTGTTCAAGTCAAACACTG-CTCCCAGGGCA----TGGTGG---------TGAGAGGGGCTTTGGTTTTTAAATAGTTTCTCTAAGTATAATCCCAGCACCTGACAT-ATCTGTTTAAGCCTTTGT------TCCCTCCCCGAGGTATCTTTGTGCGCCTGTGTTCCTGCATAACAATACCTTATAATTCAAGCTCATCTAAAGA-----CTTGCCAGTTAGCAATTCCCAAGCCCAGAGGGCCTTAGGAGACCTTACAACCAGCCTACTCATTTGTCAGCTGAATAAACAGAGTTT-TGGATACAGC--------------AAAGGTCACAGACCCTCCAG--TCAGGTAAGATCT-GGGGTTCTAGGCTTGGGTGGAAGAGAACGGTGGTGGAGACAAAAGAAGT----------------------------------------GTCCATTG------------ATCAG---------CCTGGGTCTAAACCTGGTGGCACCTTCTGCCATCAGCACTCAACACT----------------GACCCCCCCCAC------ACTCTAGGCTTCACCCCAGCTCTAGCCCCTTTCTAAGCAGG--------------AGCTCTGGGG---------CTCTGCAG---GCACTCGG--------TGTCAACCTTT a score=77181.000000 s hg15.chr4_random 185137 1443 + 1219494 ACCTTT---TAGGCTCT---AGGAgtccattttgttcactgatgtatccctaggtttcagacagtgcccaacacagagtg-agcacttcataaac--atttgttggatgaat--ggaGAGTGAGCATGTCCATCAGTGGCGGCTGGGCCTGCATACTCGCCTATCAGCACGTGTCTGCGGAGCCTCCTTCTGTCTCCagcaaattcaattagtggcttaaagcaatagaaatttattctcacagcaatggaagccggaattctgaggtcaaggtgttggcagcactgtgctccccatgaggg-----------ctccag---------gagttctttggctgtg-accccatctct----ccagtctcccc----ctccatctgcacatggcctccctccctgggtgtctc-----ctcttctaataaggacaccagtcatagtggattaggatgggctccaatccaataagatcacattcacatgtgctaggggttaggacgtggatatatctttttggggggacacaattcattccataacCATGGCTTTCTTTCTTTTTTTTAATTGTGTGCTATCAGAAAACCATTAGTATATTTCCCATGAAAATCCAGATCTCTGTCCCTCTTCCTGCATGAGAACTTGCAGGGTGGACTTGAGAGGTAGCTGTCTCCTTCTGATAGGGTATGTGCCACGGAC----------------------------------------CACCCTCCCAGCCCTCCTGTGACCTGGGTGCTGCAGCCCTGAAGTTGCAGGCCCTTGATCTGCCcagtggtttgcaactgggggtgattttgccccccaggggatatctggcaatatctgaagacatatttggttgttgcaactgagaagtgctcctggtgtctagtggatggaggcccgggatgctgccaaacttcctacaacacacagggcagcccccacgacaaagacgagtgcagcccaaaatgtcacaagacacaggtggagaaactctgTTCTACGGTGATAGgatattgatctgggaatatggctgccatgtaaagactacatttcccagcttccccgacattaggggtgggcatgtgaccaagttctggccaatggggcatcagcgtaagggaggaacacaacttccaggtgaagtcgccctgtgatggaagggccatgGGCCCCCATCCCACTGTTGTGATGCCATGGATGTGGTGCCGGGGCCCAAGCTGCCCACTAGGGATGGCAGGGAAAAGGCAAAAGGGGCCTGAAACTGGGGCTGCCCACTGGGGATGGCAGGGAAAAGGCAGAAGGGGCCAGG---AAGTCCTGCccaggcttccatgt--gggacagaaaggatcttttatcttgctcaagctgctgtgctttggggttttcttgttacAGCAACATCACCTGTACCTTGACTTACTCACAGTT----ATCTCAGTCCAGTCCCGTTGCCT-CCTATGACAAATTTCTGGTTTAAATCAGAGC------------------CTTTCTG-----------GGATGGGAAAACTCGAGAAGAA s mm3.chr5 33543144 1138 + 149719773 ACATTTCTGCAAGCTTTGTGGGGAATGCTCTGTGCATGCTA-----TGCGTGGGTCCT---CCATGACTGTCACGCAGTGCAGCACTCCTGTTCCTAGCTGGTTGGGTTCATCAAGGGAACAGCAGCATCCACCAGAGATATCTGGGT---GGTGCTCACCT----GCACTAG-----------------------------------------------AGC-ACAGAGACT--TGGGcacagtcctgggagcaggaagtctggagtcaaggtgta-gcagggtcacactctcctataggtgctcggcaccccttcagcctttcccagatttcagtggctgggcattcctttgctggggtcagtcattccaca-ccccttccctatatggtcttcccccc----tgccccttcttcttgactagtaagggcactagtcaaatggaatgagggtcaccagc-atccaacctgacctccttta------------------acttgatcacatct------gcgaagaccctactttccaaaac--------acattc------------------------aAGGATGTAAGGATATCTC-------------GGTCtctgtctgtcaatctgt--------------------------------ctgtctgtctct-------------------------------------------------------------ctTCCTCCCAG---------------------------CTGAAGTGGCAA------GATTTGCTCAGAG----GAAGCTA--------TCTTCTTCTTATGGGACAC--------------ACCCATGTCT--------------------------------TAGT-----------CAAGGTGCTATTTAATACCTTATAGGCCAGAGAG---CCCATGTGCCAAGGGCA--------CTACCATG----------------------CTTTGTCTTAAAATGACAGAatattcatcttggaatacagctgccatgcaaagatcatatttcccagttttccttccagtaggtgtggccacatgaccaagttctgaccaattagatgctagcatcaaggcaatgggcaacttcttggtaaagctgctctgtggatgggggactgtggcttcctgtctcacttTGGGAA---CATGGACACAAGGCCATCTTCAGAACT--------GGGGtg----------ggtccctgaggcctccacatgaggctactgtc----------------------tcagggtccttgtgccagccctgtgcagactttagtgcacaggagaaacagaagcttctactttgttgaag-------AGTTTAGGG--CTCTTGTTCAAGTAA-ATCGGCTACA-----ACTAATGCTCAATTCTAAACAGAAGCCCAGCACCATTTCTGTCCCAGAACAGATCTCCAGTAGAAGTTGGAACAAAAATGGGCTGTGTTTTCTTCCCGAGGTTTTTT--GGAAGAGAAAACCTGAGAAAAA s rn2.chr14 29876182 1191 - 107821284 ACATTTCTGCAGGCTCTGTGGGGAGTGCTCTGTGCATGCTG-----TGTCTGGGTCCT---CCATGACTGTTGTGCTGTGCGGCACTCCTGGT----ACTGGTTGGGTTCATCAAGGGAACAGCTGCAGTCACCAGAAGTGGCTGGGT---GGTGCTCACCT----GCACGTG-----------------------------------------------AGC-ACAGAGact--ttcatacagtcctgggagcaggaagtctgaagtcaaggtgtaggcagggtcacacacccctacaggtgctaagaaccccttcagcctctatcagctttcagtggttggacattgctttgctggggtcaatcattccacacccccttttctatatggtcgccctcct---gtgcccc-----cttacctagtaaggacacta--------gaacgagggtcatcctt-attcaacgtgacttccttta------------------gtttgatcacatcc------gcaaagaccctacctcccaaaac--------tcattc------------------------aaggatatgaggatctctc-------------tctctctctctctctctctct--------------------------------ctctctctctctctctctctctgtctccctctccttccttccttccctctcttccttccttcctctatcctccctccctcCCAG---------------------------CTGAAGTGGCAA------GATTTGCTCAGAG----GAAGCTG--------CCCTCTTCTCATGGAACAC--------------ACCCATGTTT--------------------------------TAGT-----------CAAGGAGCCATTTAATACCCCATAGGCCAGACAGC--CCCACGTGCCAAGGGCA--------CTAACATG----------------------CTTTGCCTCAAAGTGACAGAatattcatcttggaatatagcttccataaaaagatcatatttcctagttttccttttagtaggtgtggccacatgaccaagttctgaccaataaggtgttagtgtcaaggcaatgggcaacttc-tggtaaagctgctctgtggatggaggactgtgccttcctgttttacttTGGGAA---CATG--CACAAGGCCACTATCAGAGCT--------GGGGTG----------GGTCCCCGAGGCCTCCGAATGAGGTTGCTGTT------GTGCAGGG--------TCAGGGTCCTTGTGCCAGCCCTGTGCAGACTTTGGTGTACAGGAGAAACAGGGGCTTCTATCTTGTTGAAG-------AGTTCGGGG--CTCTTGTTCAAGTAA-ATCAGCTACA-----TCTAACGCTTAGTGCTAAACAGAAGCCCAGTCACA-TTCTG-CCCAGGACAGATCTCCAGTAAAAGTTGGAACACAAATGGGCTATGCTTTCTTCCTGGGGTTTTTTTGGGAAGGGAAAACCTGAGAAGAG a score=70722.000000 s hg15.chr4_random 186580 1087 + 1219494 AACATAGCAGATCTTGCTGAGTGTGGGCCCA------AGGTGTCCAGGTT---------------------CCAACACAAACATTCCAGGGCTGTGGGCAGTGGCGAGGACGGCTCAGCCCGCATCCCTGCCTTCCACAAATACTTGGGAATCAGGATCGATGCAGGAAGCTGGAGGAAGCTCCCAGGGTCATGGCAAATGTGAGCATTCTTAGTTTATTTTCCCAAACATGTTAAGGACTCTTCTTCATTTTCCTATTAAAGAAAACCTCAAAGCAAACAAAACAAAACAAATCTCTGAACTC----------CCTCCAGCTCTGAAGCACTTGTCTGC------------TCTGGTCAGATTCACAAATCGTGGGCATAAATTACTTTTGTTGAATTAACCATTCCTACCCAGAACATTCTCTGGATTCTACCTGGAAGCAGCTGCAATACAAGGTATCAAACCTGAGGATGGCAAGGGTGGCCTTAGGGAGCACGTCACGCCTCACACATGGGCACCCGCCAC--------CTGTGGGCCTGCCCACACTTTCCACGCGGGCACGCCCACACTTTCCACGCGGGCACGAGAGCAGGTGGTGTGTGGCGTCTGTGGTTTCCGTAACCTTTGGCCACAGCTGGGGACAGGAG-CTGCACCACTCTGTGG-CCCTTTGGAGCTGTGCACATATTCAGGGCTCAGCAAATGAGAGGCAGCAATGCAGGGTGGAGAGTGGCTCAGGTGAGCGCTGGGCACAGGTGCTTGCTGGGTCTCA-GTGTCTTCACTGAAGGAAAACTGCCTGCCTCGTGGAGAGAGGGGTTCCTTCATGC-----ATTCACCA-TGCCGGGTGCTGGGGCGAAGGGTTGATTAGCACTGGGGTGCGCATCCCAAACAGGCTACGTGGTAAACAGCAGC-CCCCACAGCAGGAAAGTGTGGTTGACTGGGGTCCCCGTGGAGGTGACCACCTTAGGGAAAGAAGCCCCGGTGTCCATCCAGGGGCCCCTATGTGGTCTTTGTTGGGGTGGGTGGCTACCGCAGAGGTGGTcactgtgggtagagactggatggggcaaggcctgagcccgagcc-ccaatctaccagccactccttggggacctggggagccgcatctgctcccacggcctcc s mm3.chr5 33544574 1006 + 149719773 AAAAAAGACAATTTTGCTGAACTGGTGTTCAGGGCCAGGGTCCCCTGGGTGGTCTCTGTGAGATGGACAGGGCAGCA-AGGCATTCCC---CTGTGG---ATGGCCAGGCCAGGTGGGGTGGTGGCTGGAAGTTCCAC--ACATGGGTAAAT---------------AAGCCAGAGGCAGCTTCCAAGGTC-GGGTGAACATGAGTCTTCTCAGCTTGTTTTTCTGAACATGTTAAGAACTCT--GGCATTTTCCACTTTTAAAAACCCACAGC-CAAACCAAACAAGA-GCTTCTCTGCACTCATAGGAGAGCACAAGAGCTCTGCAGCTCTTGTCTGCCACAGACACAGACACAGTTAGTCTCCTAAAACGTGGCATGAAATCACTTCAGCCTAATGAA-CGTGCCTGATGGGGTCA-------GGTTTCCCAGAGGGGCAGCAGAGATGTAAGGCATCTGAGTTCGGCACGATGAGGGTGGGCT----GAGAATTAGAGAGTCCACACTGTTGTACACACAACACTCAACACTCTTG---TGTCCA--------------------GCTCATGTTCCAAGCAGATGCAAGAATAG-------GCGACTTCCTTGTCTTCAGTCACCTGTGA-TACCACTGGGATTGGGAATCTATTCCACACCACAGTCTCTCTAGACCTCTGCACATACTTGGTG-GCAGCAAA--------------------TGGGAAGAGACGTGGGTGAG-GTTGGACTT-GGTGCTCTCTGG-------GTGTCTTGGCTGTGAATAAACCCTCACTCTCG----GTGCGGGATTCCTACAGTCCCTTGCTTCATTAGTGACCATT--------AAAGGCCAATGTAGCAATGGGGCATCCAGCTCAAAGGGAGCCCA-GGAAAGCAGCAGC-CCCAACAATGAGAGAA-GTGGTGAA--------------------GCCATTCTGGAGAGAGAGGCCCTTGTCACCAAGTGAGGGTCCCACAGT-GCTTTTGTGGAAATGGAAAAGTACCATGGAGGTTTCTAC------CAGTGCTTATTTGGGGGTTAGC---AGCCTGAGCCCCCTGCCAGCTGAATGCTCCTCTGTAACCAGGCAGG--ACATTTGCCTTCAAATACCTt s rn2.chr14 29877607 934 - 107821284 ----aagCCAATTTTGCTGAGCTGGTGTTCAG-----GAGTCCCCTGGGTGGTCTCTGTGAGACGGCCAGGCCAGTG-AGGTGCTCCC---CTGTGA---ATGGCTGGG-CAGGTGGGGCAGTGGCTGGAAGCTCCAC--ACACCAGTAAAT---------------AAGGCAGAGGCAGCTTCCAAGGTCAGGGCAAACATGAGTCTTCTCAGCTTG-TTTTCTGAACATGTTAAGAACTCT--GGCATTTTCCACTTTAAAAAACCCACAGC-CAAACCAAACAAGA-GCCTCTCTGCATTCAGAGGAGAGTACAAGGGCTCTGTGACTCTTGTCTGC------CACAGACATAGTTAGTCTCATAAACCGTGGCGTGAAATCACTTCAGCCTAATGAA-CATGCCTGCTGGGGCCA-------GGCTTCCCCGAGGGGCAGCCGAGATGCAAGGTGTCCGAGTTCAGCATGATGAGAGTGGGCT----GAGAATGACAGATCCCACCCTGTGGTACATACAAT-------------------------------------------GCTCATGTGCCAAACAGATTCA-----AG-------GTAACTTCCTTGTCTTCTGTTACCCATGA-CACCGTTGGG-TCAGGAA------------------CTCTCCAGAACTCTGCACATACTTGGTG-GCAGCAAA--------------------TGGGGAAAGGCGTGGGTGAG-GTTGGGCTC-GCTGCTCTCTGGGTCTTGAGTATCTTGGCTGTGAATAAACCCTCACTCTTG----GTGCAAGATTCCTACATTCCATTCCTTCATTAGTGCCCAGT----------AGGGCAATGTAACAATGGGGCATCCAGCTCAAAGGGAGCCCA-GGAAAACAGAAGCTCTCAACAATGAGAGAA-GCAGCAAA--------------------GCCATTCTGAAGAGAGAAGCCCTTGGCACCAAGTGAGGGTCCCAGAGT-GTTTTCATGGAAATGGGAAGGCACCATGGACGTTTCTAC------TAGTGTTCATTTGGGG--------------------CCAGCAGGCTGAGTGCTTCT-TGTAACCAGGCAGT--ACACTTGCCTTCAAATACCTt a score=3993.000000 s hg15.chr4_random 187667 62 + 1219494 gctttctcatctgcaaagtggggaaacc-atggcacccaaccctcaggggcgatatcaaggtg s mm3.chr5 33545972 57 + 149719773 TCCTTA-TATCTGCAAAGTGGAGACATGAACAGCATCTAACTCTTGGG-----TAACAAGAAG s rn2.chr14 29878926 42 - 107821284 -------caTGTGCAAAGTGGGGTCATA---------TAACTCTTGGG-----TAACAAGAAG a score=54956.000000 s hg15.chr4_random 187735 713 + 1219494 ----agcaaAAGGCTTTCAAACTCTGTTGAACACTCTGAGAAGTACTCGGAGGTCTCCAGGGGAC-AGCCACCCAGGTTAGGGAGG-----TCTAGGGGTGAGCCTCCATGGGTCAGTAGAGGATGCACTGGCCACAGGTCCTGGACTCTG-------------GCAGCCCGGCTGAGGCGGGGAGGGGCGGCCCATAGAGCA-GTGGGGAAATGGCCCAGGAAGCCTTCCCTGTGCTGTGAAGGCCAGGGCAGAAGCCCCCTCCACAAGAAGCCCTTCCTACTGCCCCAAGCCAGCACAGGCAC------CCTCAGCTCCTGTGGCCAGGCACTGCCCAAGGCTGATTTATCTGTGACCCCAAGCGTGGCATGGAACCTCACACAGCGGAGCACCACAACCGTCTGCTGTGTTGAAaataatcagagctgtcctaagac------ggaagcacgctgctcagaaagcagtgagctccccatcgcctggggtgtgcaagcagaggctgggaacggcctgaggcacatcacaaggcagactcaaatgtcagctgggagCAGATCCA--ACAGtgatgatgataatgatgatgaagatgatgaGG---GGGAAGAGGAAG----AGGAGGGTCAACTGCGATTTGCCGAGAGCTTGCTACGCGCCAGGGATCCTAAGGTCTTAGTTCTCTTTATTAGAATTGTTTCT------ATTTGCCAAAGTAACTCAAGCACTTGGAACAAATTAAACAATACAGGGATAGA s mm3.chr5 33546409 642 + 149719773 TGAGAACTAGAGATTTCTCTACCCTGTCAGTTGT-----------CTGTGTAGTCTCAAGGAGACAAACCTGACAGGT--GGGAGGAAGAATCAAGGGGCCTCACACCAT-----------GGTTGCACC--CTGTAGAGCCAAGCCTCTG-------------GCATCCTGGCT---GTGGTGAGGGACAGCATACAGAATGTATGGGATGACTGCC----AAGATCTTATTCAGCTAAGGAGGCCAGAACTGAAGCCTCCTCTATAGAAAACCTCTC---TAGTCCCAGGCCAGCTGAGATAC----CTCTTGGGCTCCTGTGGCC-----------CAAGTTGA----TCTGTGACCTTA---------------------------AGACCAAGAACTGTGCTCAGTGCTGA-CATCAGTAGGGCTATCCTGAGACTCCGGAGTGGGCACCGTTCCCAG--AGTGTTGAGCGCTCTATCACCT---GCATACAGGTGAAGGCCAAGGA--GCCCCAGAAACACTGCCAAGGAGACCCA----TCATCCAGGACCAGATGCAGGACAACAGTGATGATGGTAGTGCTGGCAATGATGTAGGGCTAACAGCAGTTGTGGTAGTGATGGTGACCATGCTTTA---AGAGCTTCCAAAGTGTAAGGAATTGCAA-ATATTGGATCTTTCTATTA-----ATTTTT-AAATAGTTTACCAAAG----TCAAGCTCTT-AAACAGGCTAGATGATACAAAGAAAGA s rn2.chr14 29878973 655 - 107821284 TGAGAACTAGAGGTTCCCCTAGCCCATCAGGTAT-----------CTGTGCGATCCCAAGGAGACAAACCTGACAGGT--GGGAGGAGGGATCAAGGGGCCTCACCTCAC-----------GAATGCACC--CTGTAGAGTCAAGGTTGTGATGGCAAGCCAAGGCAGCCTGGTT---GTGATGAGGGACAACTTACAGAATGTATGGGAGGGATGTC----AAGATCTTGTTCAGCTAAGAAGGTCAAAACTGAGGCCCTATCTATAGAAAGTCTGTC---TAGTCTCAAGTCAGCTGAGATACATAACTCTTGGGGTCCTGTGGTCA----------TATGTTGA--CATCTGTGACTTTA---------------------------AGCCCAAGAACTGTGCTCAGTGTTGAACATCAGCAGGGCTATCCGGAGACTCCCTAGTGGGCACAGTTCCCAG--AGTGTTGAGCTTTCTATCACCT---GCATACAGGTAGAGGCCAAG-----------AATCACTTCGAAGGGGACCCA----TCATCCAGGGCCAGATGCAGGACAatagtgatgatggtagtgctggcaatgatgtgg---taacagcggtagtcatagtgatggtgactgtggtTTATTAAGAGCTTCCCAAGTGTCAGGAATTGTAA-ATATTGGTTCTTCCTATTA-----ATTTTTTAAAAAGTTTACCAAAG----GCAAGCCTTT-AAACAGGCTAGACGATACAAAGAAAGA a score=2761.000000 s hg15.chr4_random 189659 77 + 1219494 agtccacttagtacgtccttcggcaggaggaagtctggacaaagggtaggtcccgggtgggttcttggaggctcaag s mm3.chr5 33547680 76 + 149719773 AGCATatttagtttgtgcctcaacagcaggaagcctggcccaagggtggctccagggcca-ttcatggtggctccaa a score=153303.000000 s hg15.chr4_random 189736 1418 + 1219494 aacaatggcacaggggacacaccctctttccttccatggttttcatcctcatcctcagctcctcctggtcacatgacagctgctgctgctccgggcatcacatcctcacaTGTGCCCAAGCAAGCAGGAAGGCAGGCAGTGGGCCTCCCGGCACCTTTCACCCTTGTCCTCAGGGAGGTATCATTGGCTGGAACGGGGTCAAGTGGCCTCCTTCCTGCAACCACCCAGCAACGGGCAGGCCCCAGGCTGAGA---GCTCTGCAGACGTCATTCTGAGGAGTGTGCACAGCGGCCACCAAGGCTGGGAAAGGTCACAGAGG-AAAACCCAGCCAGCTCGAACCCAGAGTCCAGGCAGCAGGCCTGCTGC-CAGCCTACCCCGCTAGGCCCAGGCCCAGGATGGTGGAGCAGGAGGTG------AGGTCTTCTGGGCCGCCCTGCCTTCGTCACCTCTACATCTCCAGGGCTGCACGCAGAGGATGCTTCCTGGTGTCTGCGGACTGCATGACAACTGAACCAGTGAAGGGCTG---TGGGTTGAGGTTGGGCACTGGAGGGCCCTGAA-TGTCAGGCTCAGGCAGCTAGCG-GGCA--GGGCACAGC------------CCCTAGCAGGAGAAGCCAGG-TGGAGACTGGAGCAGGTGCAGCGGGCAGGCAGAGGTGGGGCTCGGTGGCAACCGAGAGGGTCGGGGGAGGCGGGGATCTGAGCTTGGATCCCAGCAGGGCCAGGGCTGAGGTACACAGCTGGTGCTCAATAAGACATGCTGACCCACTGCTTTAATCTATTACACTCATTGCAAATCAAAGCCAGTCCCCGAAGCAGTTCTTTCTCCAGAGGGACTTCCGCCAGCTCTGTAAGAACTCGACTGTGCCAAACCCATCAATGCTGATCAATATGCAACAG-CTCAG-------------------AGAGCCAGCCCAGGCCACGGCTCCCTGCCACATCCTGACAAGACAAATCAGCTTCTGGAATTCTTCAGGGAGGGGCAGGGAGAGAAGCAAGCCTCATTTTTCCCT-GACTCGTCTTTAAAAATGAAATTTCAAATAAACATAGGGAAAGAAAGCTCAGCTCAGCTCCAGGGAGAAAACATGTCCTCTTGGTCTTGAGACAAGAAGATAGGGCTGGCTTCCCTTGGTTCCCGCACCCACCAGGGCTGAGTGGAGAGGGGTCTCTCCCCGAGTCCAGCCTCTTCCCTTTCCCCTGCGGACACCAACCGAGGGCAGAGATGGGCAGGC---AGGCGCCACCCCCACCCCCAGGAGCTCACAGCCAAGTTGGGGGAGGGGGTCACtcagggctggcatgggcctcggaatgctctggtccaatgctcccattttacagacaggggaaactgaggccctggaagccagaaggctcccccactgccagacaataagtaagggaatgagcaggagcctaaagccacatctgatgaccc s mm3.chr5 33547756 1343 + 149719773 aatagaagcaatgggg-catatactcttt-cttcagtgacttgtatccttgtcctcatctcctcttggtcacgggacagctgctatggctctcagcatcacagcctcatacacacataaccaaacaggaAGTGTAGTGGTGGGCCTTCATCTACATTTT-CACTTGTCATCAAGGAGCACTCACTGACTGGCTTGGACCCCA-CAGCTTTCTACCTGCAGC--TCCTGCAGCAAGCAGGCCATGAGCTGTGA---GTT----AACAGACCTTGTAGGCAGCCTGAAAAGCAGCCACTGAAAGAAAGGTAGTTTCCTGAGGTCATGTCC--------TAATCCCAGGGTCCAGGCTCCACACCAG-----CAGTTT------CTAA----AGGCAAAGCCTGGAAAAGCAGGCTATGGGAATAAGAACCTTTGATCTGGT---CCTCTGTTTCCT--------GCAGGGATGCATACAGACAATGCCAGGTCGTGTCTGCAGAC---------------CCAATGAGGGACTTAACAGGGTGGGGACTCAAAACT-GAGGCCCTCAAA-CACAAGGCCCAGTCAACTGGAGCAACAGTGGGAACATCTGGGACTTTCAACGCTCATATGGGCTTCCGGGATACAGGCTG--GCAGA-ATGGCAGGCTGGAGCCATTGAGGCT-GCACACAGCTAAGGATACAGTGACAGACAG------GAGCTAGACCCCCAGCCGGG-CAGTGCCAAGGCACACAGTGGGTACCCGGCAAGAGACGCTGACCCTCTGTTT---TCTATTACACCCCATGCCAATCCCAGCCAGTCC---------------CTGAAGAGGG--CTTCGCCAGCTCTGTTGGAACGCTGTGTTGCCAAATC-------GATGATCAATATGCAATGGATTCAGTCTGCAGGCTGGGGCGCCAAGAGCCAGCCCGGCTGCCGGATCCTTGCCACGTTCTGACAAGACAGATCAGTCTTTGGAATTCTTCAGGGAGGGGCAGAGAGGGAAACAAGCCTTGGTTTTCCCTTGGCTCATCTTTAAAAATGAGATCGCACATAAACATAGGGAAA-AATCCTCAGCTCCATTTCAAATAAAAAGGGCATCCTCTTAGACTTGAGACAAGAA-ATCCAGCTCTATTTCCCTGACCCTGTCACCAGCTAGAGCTAAGTAAAATGGAAGAGCTCTGTGAGCCTGGC--TCTCCTCAGCAGCTCCAGGCACCAGCCAAAGGCAAAGCTGGGCAGGCCAGATGCGACACTCC------------CTCA----------GGGAGAGGGagaatggaagagccagcacggatattagag-acagtggtgcaatgtgttcatttcacagacaggaaa-actgaggcctgagaatgaggagggtcactcaGCTGCCAAGAAGCAAGGAAGGACATGATCAGGAGCTTAAATTCACACTTGATGGCTC s rn2.chr14 29880046 1315 - 107821284 aatagaagcattgagaacatatactcttt-cttctgtgactt-catccttgtcctcatctcctcttgctcacagaacagctgccatagctcttggcatcacatcttcacatatgcatgaccaaacaggaaggacagcagtgagccttcctttacatttttCCCTCGTCATCAAGGAGTGCTCACTGACTGGCTCGGACCCCA-CAGCCC-CTACCTGCAGC--TCCTGCAGCAAGCAGGCCTTGGACTGAGAAGAGTT----AATAGACCCTGTGGGCAGCCTGAAAAGCAGCCAATGAAAGAAAGGTGGTTTCCTGAGG-CATGTTC--------TAAACACAGGGTCCAGGCCCCACACAGGGTGGGAGGACT------CTAA----AGGTCAAGAATGGAGGAACAGGATACGGGCACAAGAATCTTTGGTCTGAT---CCTCTGTGTACTC-------GCAGGACTGCATATAGACAATGCCAGGTCATGTCTGCAGCT---------------CCAGTGAGGGACTAAACAGTGCGGGGACTCGGGGCT-GAGGCCCCCAAAACACCAGGCTCAGTCAACTGGAGCAGCAGTGGGAACATCTGAGACCTTCAATGCGGATATAGGCTTCTGGGGTACAGGCTG--GCAGA-ATGGCAGGCTGGAAGCACTGAGGCT-GCAAGCAGCTAAGGATGCAGTGGCAGACAG------GAGCTCGACCCCCAGCCAAG-CAGTGCCAAGGCACACAGCGGGTACCTGCTAAGAGACGCTGACCCTCGGTTT---TCTATTACACCCCGTGCCAATCCCAGCCAGTCCTGGGAGCACTTCTCCCTCAAGAGGG--CTTCGCCAGCTCTGTTGGACCGCTATGTTGCCAAATC-------GATGATCAATATGCAATGGATTCAGTCTGCAGGCTGGGGCGCCAAGAGCCAGCTGGGCTGCAGGATCCTTGCCACATTCTGACAAGACAGATCAGTCTTTGGAATTCTTCAGGGAGGGGCGGAGAGGGAAGCAAGCCTCGGTTTTCCCA-GGCTCATCTTTAAAAATGAGTTCGCACATAAACATAGGGAAA-AATCCTCAGCTCCACCCCAAAGA-----GACATTCTTTTAGACTTGAGACAAGAA-ACCCAGCCCTGTTTCCCTAACTCTGTCACCAGCTGGAGCTAAGTGAAATGG---------------------------------------GGGACCAGCCAAAGGCAAAGATGGGCAGGCCAGACTCGACAGTCC------------CTCA----------GGGAGAGGGagaattacagagccagcacagatattagag-acagtggtgcaatgtgttcatttcacagacaggaaa--ctgaggcctgagaatgaggagggtcactcagctgccaagaagcaaagAAGGACACGAT--------TAAATTCACACATGATGGCTC a score=4867.000000 s hg15.chr4_random 191802 99 + 1219494 ATATGTGTGTACACATCCATATATGCGAAGCCATGTGTGCACATGCAT-----------------------------------------------------GACTGGTG---------------TCATGCATAGGGACAGATGTGTGCA---GCACAGGCAT--------------ACACACGT s mm3.chr3 78605801 94 - 160674399 ATATGTGTGTACACACACATTTATGCACAGTCATATGTACAAATGTAT----------------------------------------------------------------------------GCATATGcacacacacacacacacacacacacacacac--------------acacacaT s rn2.chr2 79385024 184 - 246339213 GTGTTTGTGTACAGACACATTTCTGCACATTCGCATGTACAAATGTACATGTGcacacacaaacaaacacacacagatacacacatacaaacacaaacatacactgatacacacacacaacacaacacacacacacacacacacacacacacacacacacacacacacacaGGTGTACACACAC a score=2299.000000 s hg15.chr4_random 191902 23 + 1219494 TGTGCA---ATGTGCATGGATTCGTG s mm3.chr2 3698100 26 - 181423755 cTTGTATCTGTGTATATGTATGCATG s rn2.chr3 24061223 26 - 165924081 tgtgtatctgcatatgtgtatgcaTG a score=262884.000000 s hg15.chr4_random 192038 3504 + 1219494 TGTGCAAAAAGCACGTGTGTATGATAGTGCAtatgtatatatgc--acctgcatgtgaagagta----------cacgggcatgtgtatgcacacgcaggcatgtgtgcatgtg------------tgggaacatgtatgtgtgcatacatgtgtgtatattct-------gtagg--catggatgcactgtaaatccacatggtatatgtagacagtgtgtgtgtggatgtgt-gcatgcatgtgtgtgtgaaggcatgcaagtg-------------------tgcatgaataggttgcatgcttgcatgcatgtgtggatatgtgtatgtatgggtgttcatgcttgcatgaacacacgtgtattcatgatatgtatattcatgtgtgtgcatggatctatgtgtgcacaaggatgtgtgtggatacatatatgtgtgtggacactgtacatctgcgt--atgtgcatgcatGCCTGCATGTGCAGGGAGGGGGCTCAAGGAGCCAAACTCCCCTCCACCCGAGCTGAGGCTGCTCACGAAGCCTAGAGCGCGGCAT------------CCCAGGCAGGCACCCAGCTCTC----------TCCGGCACAGCAGCCAGGGCCCAATGTCCCATGGC-------TGTATGGCCCT-GCTGGACCAACCCTGTCCTCCTAGGCCCCA-----CGCATCATGGGTGAGATACAGGCAGGTTCGCCTCTGCAGCTCCAGGACGTGCCACTTCTAGGTTCTCAGTTCTAGGAAACACCTGTAGGTTTCCCCTCTGAAATATGCCCACTTCTGCCATGTACTCCCCTGCACACGTACACACAGACAGCCCCCACAACCCCCGCCAGTGCAGCCTGACTCCCCCAGC-ACCCTCCTTCCTCGCCCCTCCTGGTCGTGCCAGCTCGCGTCGTGCCTCGTCAGGACAGGAAG-TCTTGCTGGGTACGTGCTGTTCTGCTTGTTACGGA-CAATCCGGAGCAGTTCCTCAAGCCTAATT-TCAAGGTCTGGGGGAAGAGTCCTCTCCAGCTTCCTTGCAAACAGCTGCGGTCCCGGGCCCTCCCACCACAGGCAGGCCTGCGTGCAATGCAACCCCTATGCATGGCCCAGGGCTTCGCTCCTCCTAATGACTCCAGGCCCCAGCTTTTTGCCCTTGGCTCCATCCAGGCCCTGGAGTGGACCCTTCTGACCCCTCCCTGGTCATGCCAGGAGGTGTTGCCAGCAGCATGTCAGCCTGTTGGCTGCCATCCCCAAGGGCCTGGGCCGCTCACTGGCCAGGCACTCCAGATGCCCTCAGCCTGGCCTGTGAGTGGCCCCTGCCTTCAGCCCTCCTGGGCAGTGGGAGGCTCATCTGGCTCAGGGCCCCAGGTGCTCCGTGTCCTTTTCCCTCCAAATTCCCGTGCCTGGGCTGCCATCTCTTGGGAACATAGG---------AGCCAGGATCCTAGATAGATCCCCATGCCCCTGCGCATCCCCCAAAGCACTTCTCAAAAAGAGAGC--CCTTCAGGATGGGGGTGGGAGGCACGCTGATGCCG--AGGGAGAGAGACC--TTCTCCAAAGCCTGCATCTGGCCCCTGCC--ACTGCTCTTTCCT-AGTCCTCCT--GTCTCCCCACGCCCCCAGTACAAAGCC---------------CACTCCCACTGGAA-------------GAAGGACAgcctaca--------gaggcctccccct----------tcctcataac----acctcctcactctctaag------------cacagtttggtc-----acctcctccagg-------aagg---------------cttcctt--gacaaccccgctcccaggctggg------------------ggaggag---cccCAGGGCACTGATGGTTGTCAGCGCATTCACCTCAGTGGGTGGCCCCATCCACCCACAGATGGTGAGCACCTCAACTGAGGCCAGGCCCCCCTCACTCTCTGCCATCGCAGAGGGCTCAATAGAGACAAGGGCTCCAGCGGGCCGACCATGAAGGAAGCAGGTGTGTGTGGGCTTCCCTGAAAAATGCACCTCCAGGTGCCCTGGACAGGTGGCACCTTTTAGGCAACCAGAACCAGGAGGGCCT-TTAGTAAG-GATGGTGACCCTCCACCATCCCCAGGTCACACACCTCCCACAGGACAGC-CATGGCCTGTTGCCTCCCCGAAGGGCATATGTGCCCTAGACTAGCACAGGACTGGCACAGAAGGCTTTGGCTCCA-ACGTGCGC----CCCTGCTTGGCAGGCCCATCATCTGAAATATTTGCT------TTCTGCCGGGCCCTGGCTCGGCCTCCACACCCCCAATGCAGGCCCTGCTGGTGACAAACATGGTGAAGAACGAAGCCGTAGCTCCTGGCAGTGTCTCTGCGGAGACAGACATGCTCCCCAGTAGGGCTGAGCAGCAGAGAACACGACAGGCTCTGAGGCTAAAGCTGGCGCCCTTCAGGAGCTCAGAGAGAAGCTGCC-CCAGGCCACGGGCATGGATAGGCATCCCGGGGGTAGGGCAGTCACTCCAGCCGCTCTTCA---------TGATGACCTCCCGGGCACTCAGAAGCGCCCCTTCCCCGCCGGTTCTAGCCACAGGATGGACAGACCTTCCCTCCCTCTC---TCCTGCGGGCCCATGCAGGGAGA--GGCCAGCCAGCTGGGGTTCGTTTCTGGACGTTTGGGAGAAGGGTCGTCCCTTCGGTCCTAGCAGAGAAACGTCAGGCCTGAGAACTCCAGCTCTCCTCCTGGATCACCTCGTCCCTGGAAGTCCCTCTCCCACAGACCCCAGGCTGCCTGGAGGCAGAAGCCAGC-------ACCCAACATGGGCCACAGAGTGGCAGTGCACGTGGCAGTGCACATCTGCAGAATGGAGGTGCGCGGACGGGGGCGAGGGTGCAC--GGGGGCTACCTCAACG---------GCCGCTCTCCCCTGAGCCCACCCTTGCAAAA-------------AGCTCCATCATCCAGGCAGCTCCGTTCTGGGTGTTTGTCAGAGGTGGTGACTTTGAACA-CCTCTCCATCCTTTAAAAGCAGGGCCTGAGAGCCTAAGGATTAAACTTCAATCACTGCTAACATGGGTGCAGAGCTTGGGAGCTTGCCCAGGGCTTCCACAGACACCGCCGTTAGTTATGATTCATGCTCCAGCAGCGCTGGGAAGTGGGCC---GAGGGAACTGAGGCCGGGGTGGGTGCGGAGGTGGCTCTGACGGGGAGCGCCGATCCAGGATCTGGTCCGGACCCTGAGCTCGGCAGGACCTGTGCGCACGCAGGTAGCGT------CGCGTCCTCCCCCAGGCTGCGAGAGG-TTGCTCTGCCATCAGGCCATGGACCCCGAGCCGCCCGTGCTGCGCGCGCGCGTGTGCGCGCCCCCGCCTGCGCCCATGCCTGC-GCCGGGGGAAGCGAAGGAGGCTCCAGTCTTAAAAAGAGCA-GCTTCTGGAACTTTTTTCCCATGCCGGCCGCCGCTCGGCCCCGTCCCGTAAGCTGCAGGCGGCCCTGGAGGGGGCGCCCTCTCCGAgcgcgcgccccgcgccgccgccccggactcctccccggcgccgcgcgggcAGGTTTGACCAGGCGGCCGCGGGCTCCGGTTCCCGGCCAGCTCCCC--------------AGGGCCTTCGGCCCGCCCCGCCGCGC-----ACAGCCCGCCCCGCTGCGCAACTCGACCCAAGTTGGAAGCCGATCGCAGGTGGC-GTAAACGCGCCCAGCG s mm3.chr5 33549129 3124 + 149719773 TGCACAAACAACATATGTGTGTGGACATTTATGCTTATATGTGCATATATGCTTGCCTTGTGTGTGACTATGTGCAAACTCATGTGGGTGTACATGCACATATGTGTATACATGCATGCCTTTGACTGGAATCTTCCAGGTGCAGATACACATACGCATGTGTT----TGGGTATATACACAGCTACACTGGAAA--------GTATCTGAAG---GGATGAATGTACATACGTGGCATGCACATGCAAGT---GGTGTGTAAGTGGTATATAATCATACATATATGTATGAACAGG-TGCACA--TGTATACAC------ACATGTGAATGTAAGTGCAT------CTTCATGAACATCCGTGTGTTCAGGCAATGGGTCTGTGTGTGCACACTTGAA------TAAGCATATCCATGTGCATGAGCCCATGAGGGAGTGAGG------------TGCAT--GTGTTCACGCATACCTGTGAGTACACCAGGGTGATTCAAGGAGCCCAGCTCCCGTCAGCCCATGTCACGGCTGCTT-TGCAGCAT-GCGCACTGCTCCCAGGATTCA--CACAGACATGCAACCAGATCCTGTGGTAGAGGCCTGGCAGGGAATTGAGAGCCTAGGACCCAACATCCAGGCACTATGCAACCCTGGCTGGACCAACCCCGCACTTCTAGGCACCAGTATACCCACCA------------------------CTCTGAATACCCAGGCTGCTTCACTTC--------------------ACAT-----GGATTTCCTTCTGAAATATACCAGGACCTTCCCAGAATGCCCTCACATA-GTAGGTACAAACA---------------CCCAGTGTGGCCTG---CCACCAACTACTCTT----------------------------------------------GAACACACAG-TCTGTAGGGGCACACATTGTTT--CCTGCCACAGAACAACCAGAAGCAGACTGTTGGGGCTAATTGGCTATCTCTGGGCAAAGAGGCTAGTTCAGCCTCTTCGTAAGTTCCTGCCACCCCAGGGGGTCTCACCA--------GCTGCCCTCAA----------ATGAGCAG-----------ACTCTTT------------AACTCTCACTTCTGGCTGCTGACTCCA-----------GAGTGGCTTCCTCTCA----------GTTATGCCGGGAGGTATGGTCAGCATCCCTACAGCATG-TAGCCATCATCCCCAAGAGCCTAGGTCACTCAGTAGCGAGCC-CTGCAGATGCCCT---------------------------TGCAGGCTTCCCTTGCA---------------------GGGCTCCCAGGGC---------------------ATCCCTTTGCCTAGGCAGGCATCACTTGGAAACGTGAGGCTGTGTGCAGTCAGGGCTTGGGCTAGAC-------TACCTGT-TGTCCCCTCA---GCTTCTC-ATATGACAGC--ATCTCTGACTCAGG--CAGGTCCACAATGCTGCCTGCAAGGGGAGAAGCCATCTCTCCAACA---GTACCCGACCAGTGCCCACTTGCCCTTCCCCTCATCGTCCTCAGGCTCCC-ACATCCTCAGAACTAAACCAGCCTCTTCGGGGGGCACTCTCACCAAAGAAGCATCCCATCTGAAGGAGTACCCACATTCCTAAAGAGCACTCTGTCT-TAGGGACCATCCACACACTGGGGACTACCTCAGTCCCTAGGGAGCATGGTCCACAAAGCTTTTTCCTAATAACTCCTCCATAT---CCAAAGGTGATACATGCTGTCACCTCCTC-------CTTTGCTTCTAGGCTGGGTTGGGGGTAGGGATGGGGGGTGGGGAAGTTCCAGGGCTTTGATGGCA--------------CTCAGTGTGGGG----GTGAATATCCAGACAC-AAACACC----ATAAGGCCAGACCTC-----CTCTTC-------------------------------CTCCAATATACTGATGTTGGAGTCA-------TCTGGGGGCTTCTATACAAAC--CAACTGAAGTTGTTTTGATCA-GTGGCCCTTGTTGGGGCCTCTGGGTAAGAAGGACTTGTTAAAAAACCTTGGCGGTTCTTCCTCAT----AGTTCACA---TTCTCAGGTGACAGCACATGGCACTTTGCAAGCCCTGAGTTAGAAAGTGCCC-----------AGGACAGGCATCAAGAAGTGTGTCCTGC-ACGGGCACAGTACTCAA---GACAGGCCCATGGTCTGAAATGTTTGTC------GTCTGCCTAATCCTAGTTGGACACCCCTGCCCTGAGGGTAGGTCCTGTGGGT-----------------------------------------------------------------CCTCTAGGGCT-----GCAGTGCCCACAA-------GGAGGTTG----CACTATCCTCAAGGACTGCAGGGAGAAGCAGCCACCAGAGCAGGGACAAGTCCAGATGCCAC-------AGGTCATGGCTCCAA--GGTCCTCA---------GAATGACTTTCTGAT------GAGGCCTTCT----------------GCCAGTGGATTGCCAA--CTCCCCTCCCTTTCCGGTCTATCTGACCTGTGTAATGAGG--TCCTGGCCAGC------------CTTGGTG---GAGAGAATGGT-ACTCCTTTAGTTCTAGCAGGGAAACGCTAGGTCTGGAAAGTCCAATTTATTCTCTTGGCCACATCCTCCCTG---------------CAGACCTGGGGCTGCCTGGAGGCAGAGACCAGTGCCTCA-ACTCAACTCAGGCC-------------ACACGTGACA--GAACCTCTGTGAAACTGA------------------------CAC--GAGATCT-CCCCAACATTTGATTTGCTCGCCCTCTCTTAAACCTACTCCCACAAAA----------TCACGCTGCAT----GGGGCAGGTCAGTTTTGA--GTTTGTCAAAAGCGCAGGTCTGGAGCGTCCCCTCCAGCTGTGAAAAGCGGGATCACACAGCATTAAGATTCAACTTCAACAATTGCCAACATGGGTATAGAGCTTGGGAGCTTGATCTGGGCCTCGACTGACACCG----TGGTTATGATTCACGATCCCGCAGCGCTGAGAGGTACTCAGAGGAGGGAACTGAGGC-----TGACTGAGGAGGTGGCTCTGCAGGGGAGCA------------------GGGACCCTAAGCTCCAAAGGAATGATGCG--CACCAGCAGTGT------------CTCTGCCATGCTGCTACAAGCGCACTCTCCAATCAGGCCGCGGACCCCGAGCCAGCC---CCTTACGAGCCGGTGTGCGCGCCCGCGCGCGCTCCGTCGCCTGTAACCGAGTGAGGT---GGAGACTACGATCTTAGAAAGAGCAGGCTTCTAGAACTCACCGCTCAGGCCAGCCCGCGCTCAGCCGGGCCCCGCAGGCTGCAGTTGGCCCTGGAGGGGGCGCCCTCGCCGAGTGCGCGCCCTGCGCCGCCGCCTAGGGCTCCTCCCCGGCGC--CGCCGGCAGGTTCGCCCAGGCGGCCGCGGGCTCCGGCTcccggcccgctccccccgggcccgcggctcgggcctgcggggcgccccgccccgccccgctgcgccctccccgctgcgcTACTGGACTCAAGTTGGAAGCCGAGCCCGGGCGACAGCACTTGCGCCAAGCG s rn2.chr14 29881391 3015 - 107821284 TGCGCACACAACACATGTGCATAGACATGCATGCTTA-ATGTGAATATATGCTTGTATCGTGTG----------CATATTCATGTGGGAGGACATGCACATA-GTGTATACATGCATGCCTTTGACTGG-----------TGcagatacacatatgcatgtgctcatctgggtaagtacacaggtacactgtaga--------gtatatgaag---gtgtgtgtgtacatacatggcacacacatgcaagt---ggtatgtaagtggtatgta------------tgtataaaaagg-tgcgcgcgtgtgtacac------acatgtgaatgcaagtgcat------ctttgtggacattcatggctttgggcaatgggtatacgtgtgcacacttgaA------TAAGCACACTCATGTGCATGAGCCCACGGGGGAGTGAGG------------TGCATATGTGTTCACGCATACCTGTGAGTGCACCAGGGTAATTCAAGGAGGCCAGCTCCTATCAGCCC------CGGCAG-----GAACCAT-GTACATTGCACTCAGGGTGCATGCAGAGACGTGCAGCCAGATCCCACGGCAGAGGCCTGACATGGAATTGAGAGCCTAGGACTA-------------TGTGTAGCCCTGGCTGGACCAACCCCACACTTCTAGGCATCA-----CTCATCA------------------GTATGTCTCCAAATACCCAGGATGCTTCACTTC--------------------ACAT-----GGCTTTCCTTCTGAAATGCACTAGGACCTCCCCAGCATGGCCCCACACA-GTAGGTACAAACAG-----ACA----TACCCAGTGTGGCCTG---CCACCAACTACTCTT----------------------------------------------GAGCACACAACTCTTTGGGGGCACACGTTGCTT-GCCTGCCACAGAGCAACCAGAAGCAGACTGTTGGAGTGAACTGGCTATCTCTG--------------TCCAGCCTCTTTATAAGTTCCTGCCATCCCGGCAGGTCTCAACA--------CCTATCCTCAA----------ATGAGCAG-----------ACTCCTC------------AACTCACTCTTCTGACTGCTGATCC--------------AGTGGCTTCCTCTCA----------GTTATGCCAGGAGGTGTGGCCAACATTCCTACATCATG-TAGCCTCCATCCCCAGG-GCCTAGGTCACTCACTGGCAAGTC-CTA-AGACACCCT---------------------------TGCAGGCTTTCCTTGCA-------------------CAGGGTTTCCAGGGC---------------------AG---------------------------------------------------------------------------------ATGCCTTCT---GCTTCTC-ATATGACAACTCCTCTCTGACCCAGG--CAATTCCACAGTGCTGCCTGCAAGGGGAGAAGCCATTTCTCCAACACTTGGGTCTGACCAGCGCCCACTTATCCTTCCCC-CATTTTCCTCAGGCTCCCCACATCTCCAAAACTAAGCCAGCCAATTCAGGGAGCCTTCTCACCTAGAAAGCCTCCCATCTGAAGGAGCACCCACATTCTCAAGGAGCACTCAGTCCCTAGGGAGCGTCCACACACTAGGGACTACCTCAGTCCCTAGGGAGCGTGGCCCACAAGCCCTTTTCCTAACAACCCCTCCATGTACTCCCAAGGTGATACATGCTGTCACCTCCTCTCAGCAGCTTTGCTTC-AAGCTGGGGT-----------TGGGAGGTGGGG---CTTCAGGGCGTTGATGGGG--------------CTCAGTGTGGGG-----TAAATAGTCAGACAG-GAACAC-------AAGGCCAGGCCTC-----TTCTCA-------------------------------CTCCAGTGTACTGATGATGGAGTCA-------TATGGGGCCTTCTACACAAAC--CAGCTGAAGTTGTTCTGACC-------------------CTCAGGGTAAGAAGGACCT-TTCAAAACCTAGGGTGATTCTTCCTGGT----TGGTCACG---TTCTTAGGTGACAGCACCTGACACTTTGCTACCCCTGAGTTAGAAAGTGCCC----------CAGGATGGGCGTCAGGAACTGTGTCCTGCTCCGGGCACAGAACTCAG---AACAGACCCATGATCTGAAATGTTTGACTGGAATGTCTGTCTGATCCTAGTTGGACACCCCTGCCCTGAGGGTAGGCCCCGTGGGT-----------------------------------------------------------------ACTCTAGGGCT-----GCAGTACTCACAA-------GGAGGTTG----TACTATCCTCAGGGATTGCAGGGAGAAGCAGCCACCAGAGCAGGGACAAGTCCAGGCACCAC-------AGGTCATGGGTCCAA--GGTCCTCATGGGTCCAGAGGTGACTTTCTGGGCA-TCAGAGACCCTCT----------------GCCAATGGGTTGGCAG--CTCCCCTCCCTTACCTGTCTAGCTGGACTGTGTAGAGAGAGTTATTGGGCATT------------CTTGATG---GAGAGAATGCT-ACTCCTCCAGTCCTAGCAGGGAAATGTTAGGTCTGGGAAATTTAGTTTATTCTATTGGCCATGTCCTCCCTG---------------TATACCTGAGGCTGCCTGAAGGGAGAGACCAGTGCCTGGCATTCAACTCAGGCC-------------GCAGGAGACA--GAACTTTTGTGAAACTGA------------------------CACATGAGGTCT-CCCCAACATTTG-----CTCGCTCTCTCTTAAACCCACTCCCACAAAAAAAAAAAAAACTGCCCTGCATTGATGGGGCATGCCAGTTTTGA--GTTTGTCAAAAGCGCGGGTCTGGAGCGTCCCCTCCAGCTGTGAAAAGCGGGATCAAACAGCATTAAGATTAAACTTCAGCAATTGCCAACATGGGTATAGAGCTTGG-AGCTTGATCTGGGCCTCCACTGACACCG----TGGTTATGATTCACGATCCCGCAGCGCTGGGAGGTACGCAGAGGAGGGAACTGAGGC-----TGACTGAGGAGGTGGCTCTGCAGGGGAGCA------------------GGGACCCTAAGCTCCACAGGGATGATGTG--CGCTGGCAGTGTTGCGTTCGCGTTCTTTGCCAAGCTGCTACTGTCTCACCCTCCAATCAGGCCGCGGACCCCGAGCCAGCC---CCTTGTAAGCCGGTGTGCGCGCCCGCGCGCGCTCCGTCGCCAGTAACCGAGTGAGGT---GGAGACTACGGTCTTAGAAAGAGCAGGCTTCTAGAACTCACCGCTCAGGCTAGCCCGCGCTCAGCCCGGCCCCGCAGACTGCAGTCGGCCCTGGAGGGGGCGCCCTCGTTGAGTGCGCGCCCTGCGCCGCCGCCTAGGGCTCCTCCCCGGCGC--CGCCGGCAGGTTCGCCCAggcggccgcgggctccggctgccggcccgctccccccgggcccgcggctcgggcctgcggggcgccccgccccgc-----TGCGCCCTCCCCGCTGCGCTACTGGACTCAAGTTAGAAGCCGAGCCCGGGCGGCGGCACTTGCGCCAAGCG a score=66417.000000 s hg15.chr4_random 195947 897 + 1219494 TGTCTGAAGG-ACGGGCTGCAAGA-TGGCTCTAGGAATAGTGAAGGCTTTGGGATGTCACA----TGTAACCAGGGTGGCCCTCGCCTCTCTCTTAGCCACACCCACAATGTCC-----------AAATTGGCCTTACCCAGCac--atagcaatcatgtcacctcctcctctccctgcccttggcaggcatcactagtcgattgtgg--------------cattattcccatggaccccagtgtgcaactggaaacctattgaacactgcCAGACTGAAACCCGCTCCCATCACAGCTGACTGTGAAATTAATTTTAACCTGATATTCCAGCTATGGAAAGTTAGAGACAAACGTGAAGGTTTTCCCTGGCTGTTTTTACCTCCCGAAGCTGACTCTGGCCC-CAGACCTCACCAAGCCCAGCTGTCCTTGGGAAAGAGGCTGATC-TGATACTGCTTATCTATACCAACTCCCGCAAAAAAAAAAAATAATCAGAATGCAAGAACTGAGggagagg-cagaggggaggaaaagagcaaagagagagagggaaggagacagaggagaggagagttgaagagagaagagTGAGGAGCCCCACGGATGCCTTTGGACACCCCCGAT-CTGACACTCAGGAAAACCCAGCAGCAACTCTCATCAGGTGGTGGAG---AGATCAGCTCTGTTGTGCTGGGAACATGAATTAGACCCTGCAGCGCCCCCTTCAGG---CTTGCCTTCCCAGGGCAAGCCCTCTACAGTTCATCAAGAGAAGTCTTTCTTTATGTGGGTCTTTTTGAGAAAAATAAAAACTG---AAAATGCTGTCTGCATCTTGCCTTTGGACATGTGACCTGAAGAAATGCTTTA-----TTTATATGTCTAGATGTATACCTGTGCCCACACACCTGCTCCACAGCACACACATGTGTGCATACCACAG s mm3.chr5 116145892 777 - 149719773 tgtgtgAAGGTACTGGCTGCCGGGGAGGATCTAAGAAGAGTGGAAGCTTTAGGGTGCCATAGTTCTGTA-------------------TCCTCCCAGCTATACCCACAGTGCCC-----------ACATTAGCCCTGTCTGGCAC---GGACACTTATGCTCATGCCTTC-CCCTCTGTCCCTGGCAGACAT-ACTAGTTGGTTGTAGTTGTTGATCCTGAACACAGCCCCTGTATTTCTCAGTGTAGGATTGGAAACTAATCGAACATCTCC--------ATCCCCTCTCTCCACAACAGCCTAAGGAATTAATCTTCACTTGATTTTACCTTTATG--CCGTCAGGGATCAA-------ATTTTATCCAGGTCTCTT----------------CTCTGCTTT-C-------------TCCAGCTGGCC-AGGAGCAAAGGCAGATTGTGAGATCAGTTG----TGGCCATTTTC----------AGTGTCACCCAGATGAATGGCT----GAGGAGG-CAGAGTGGGGGCTGAAGGCAGCGAGAAGGGGCACAGAA-----------------------------------------CCACTG-TGC----------TCCCACTGCCCACACTCAGGAGGGCCCAGCTGCAGCTCACGTCAGCTGCTAGAGACAAAATTAGTTTGGGTCCTTTGGAGAAATGGATCAGATCTC----CCCCACTCTCAAGGCCTTATTTTTGGCACCACAATCACTCTGCAGCTGGCC-AGAAGGGTCTTCTTATATGT-----CTCTCAAGAAACAGAGAAACTT---AAAAGGCT-TCTTTATCTTGC--TTAGATGTGTGACTCAAGAAAGCTCTTTACTGACTTTCTAAGCCCAGACTTACACATGCACTCGCCAGCCTGC-CTATGGTACACACAAGTGCACAGTCCCCAG s rn2.chr14 77914109 790 + 107821284 ggcccgaaggAACTGGCCACTGGA-AGGAACTAAGAAGAGTGGAAGTTTTAAGATGCCATAGTTCTGC--------------------CCCTCCCAGCCATACCCACAATGCCCCGCTAATGCCCACATTAGCCCCACCTGGCACAAAGAGCATTTCAGTCGCTGCTTTC-CCCGCTGTCCCTGGCAGACAT-------------TACTAGTTGACCCTGAACACAGTCCCTGTATTTCTCAGTGTAGGATTGGAAACCAATTGAACATCCCC--------ATCCTCTCTCACCACAACAGTTTAAGGAATTAATCTCCACCAGATTTTACCTTTGTG--TAGTCAGGGACCAA-------ATTTTATCCGGGTCTGTT----------------CTCTGCTTTGC-------------TCCAGCTATCC-AGGACCAAAGGCAGATTGTGGGATCACTTGCTTGTAGCCATCTTC----------ACTGTCACCCAGATGAATGGCCCCTCGAGGAGGACAGAGTGGGGGCTGAAGACAGAGAGGAGGGGCACAGGA-----------------------------------------CCACTG-TGCCC----ACGCTCCCACTGCCCACACTCGGGAGGGCCCAGCTGCAGCTCACGTCAGCTGGTAGAGGCAGAATTAGTTTGGGTCCTTTGGAGAAATGGATCATAACTC----CCTCACTCTCAAGGTCCTATTTTTGCCACCACAAACACTCTGCAGCTGGCC-AGAAGGGTCTTCC-GTGTGT-----CTATCAGGAAATGGAGAATCTTGAAAAAACGCT-TCTTTATATTGC--TTAGATGTGTGACTCAAG---GGTCTTTACTGACTTTCTAAGCCCATGCTTACACACACACTCACCAGCTTGC-CTGTGG--CACACAAGTGCATAGACCACAG a score=46439.000000 s hg15.chr4_random 197910 697 + 1219494 CCAGGGAGAGGTGTCAGGGTGGTGAGTGGAGGTGCAGGGATGGAGGTCGTTCCCAACAGCCAGGGCCAGGCACGCAAATAT--GGGGCCCTTGTGTGGTGTGCAGGGGGTCTCAGGAGGAGCAGCACTGAGCTCTGGGGCCCCAACCCCCAGAGGAATCAGCAACTCAGGTGGGGTAAGGGAGGGGCCGCAGGGCCCCAGACACCCAGAAGGAACCTGTGCAGGAGGACAGGGCGAGCATCCAGGTGA---GGGCATTC--------------GAGACGCC-AGCACACAGAGGTGCCAGGCGTGGTGGCCAGGCTTGGTGGCCCAGGGTTGCTGTGGGCCTTGATAAACGTCTGGCCAGAGGGTACCAGGGAAGGTGAGGGCAGACGGGGC-----TCAGACAAACCCCTTCTCTTTCAAGAAGACCTGCTGTGAAGAAA--AGAATGGCAGAGCCTAGGGGGCCACAGG---GGGATGGCTTGTCCAGGGGTCCCGCACTCCCTGGGTACAGCCTCCTGGGTGAAATCCCTAAGAGGGAGCCTGGGCTCCAGACctctgtgcctcagtttcctcacctgggggg-tgcagtaagagcttcgtgtggggcTGCAGTTGGCATCT---------------------------------------TTAGGGCCTAGGAAGGGTTGATG----GGGAGATGAAGG-TGGACAAATAGGAATGGCAGTTATGGGAAGGGAGG-GTGCAGGAGCTAGGGCG---------AGGGATAGGCA----------------------GGGCA s mm3.chr5 116147116 748 - 149719773 CCCAGGAGAGGTGTCAGGAAGCTGAATAGAAGTGCA-AAATGAGGAGTGTTCCCAGAGACCAGAGAC--GCAAGATAACAGTAGGATGCCTTGTGTGGTGTGCATAAGATCTTGGGGAAAGCAGCCCTGGCTGCTGG---TCTGGAATCAGGTGGTAACAG-AAATCAAACAGGGCTTGGGTGGAGTCTCAGGAATGAGG--ATTCAGAAAGGA---------GAAGAAATGGTGGGAGCCGATAAGA---AGGTGATCCGTGTCCATCAAAAGAGAGGCTGAACACAGGGAGAGGTGAGTGG-AGTGGCC---CCTGACTAGGGGAAATTATTT--TCTCCTGACAGA------GCCAGGAGGACAGAGGAGAGACGGCAGCCGACAAAGAATATGTCACACAGTAATATCAAGGATCGGGAAGGAAAGCTCTGAAAAAATCAGAAGGATGCAGACTGGGGAAGCAGGAGCAAGAACTAGGTTAGCAAGGGGGCTCAGCACACCTGGT-----------------AAACCCTAGTGAGGGGCCCTGGGTCTGGACATCTGTGGC----TGCCGTGATCTAGGAAACCACA-CGGAAGCTT-GTCTGTGTCATCATTGGGCtttttttttttttttttttttttttttttttttttttttttAAACAGGACTGAGACCAGGTGTATGTGTAAGGGGACACAGGTTGGAGAGTTAGGAATGATGGTCACAGACAGGAAGTCATGAAGCagagtgggggagggggggcagagacacacagagagacagagcaacagaaacagagag s rn2.chr14 77915382 697 + 107821284 CCTAGGAGAAGTGTCAGGAAGCTGGATAGAGGTGCA-AGATCAGGGGTGTTCCCAGAGACCAGAGCA--GCAAGATAACAGTAGGGCCTTTTGTGTGGTGTGCATAGAGTCTTGGGCAGAGCAGCACTGGCTGCTGG---TCTGGAATCAGATGGTAACAG-AAATCAAAGAGGGTTTGGGTGGAGTCTCAGGAATGAGG--ATTCAGAAAGGA---------AAAGAGATGGTGGGGGACCAGAAGAAGGAGGTTACCCATGCCCATCCTAAGAGAGGCTGAGCAAGTGGAGAAATGAGTTG-AGTGGCC---CCTGACTA-GGGAGATTATTTCCTCCCCTGACAGA------GCCTGGAGGACAGAGGAGAAATGGCATCCAGCAAAGATTGTGTCACACAGTAACATCAAGGTCCAGGAAGGAAAGCTCTG-AAAAATCAGAAGGACATGGACTGGGGAAGCAGAAGCAAGGACTAGGTTAGCAGTGGGGCTCATCTCATCTGG------------------------TGGTGAGGTGCCCTGGGCCCAGACTTCTGTGGC----TGCTCTGGTCTAGGAAAACACAGCAGGTGCTT-CTCTGTGTCATCATTGGGCTTTT---------------------------------------ACAGACTTGGGGCCAGGTTTACATGAAAGGGGACACAGATTGGAGAGTCAGGAATGATGGTCACAGACAGGAAGTTGTGAGGCAGAGAGAGag---------agagacagacagacagacagacagacacagacggagag a score=63556.000000 s hg15.chr4_random 198607 1096 + 1219494 TGCC-----------CTTTGAGGGTGGGTGGGAGACAGG-------------------CCCAGGCTgttccatccaatggcctctgtcctcaggaaacatgagcaggaaggtcaagacctgcatgtgcagacaggagaggagagaagtgttctttttcctgggagaggggaggaaggtttgCCACACAGAACtgtgtgcatacatgtgtgtgtgcatctatgcgtgtgtgcgtg----cacgtatg-------tgtgtgtgcctgggtgtgcatgtgcatgtatgcatgtgtgtgtgtgtgGTCCTAGGTATAAAGTGAAGCCAGCTAGCAGGGCAGGGCAGGGCTGCGTGCATGGAGAGAAAGGGACGGGGAGGGAACAAGGGAGAGAGGAGCACAGAGCTCCAGGTGGGCGGCTGAGGATGTAGGGAAGGAAGCCATTATAGCATCATGATGAGGTGGGAGGAGGGACCCCACACCTGCACTTCCTGGGCCTGGAGTCTTGGGGTGCTCCATTAGAGACACAG-----CCTCCTCCACAGAAGCTGGCAAGGCAGTCAGAGATCACAGCAACAGGCTTTCCCAGGTCAGGTGGGCTGGAGCAGCTCAGAGGATGAGGGTTCTGGGGGCTTCACCACCCTGAGAGGGCAGCGTGATTGCTGAGCAGGGACACTAGGGGCAGCACCAGGTGCCAGCCTCATGCCAGGTCTACGCCCAAGCCGCCATCTCCCTCTATGGGCCCTGGGGCCATCTCAGAGCAGCTGCAGGAAGTAAAGCTGGCCTGGTCTGGCCGGAACGGTGCTGCCTAACTTAGGAAAGCTCGGACTGAAGTCAGGAGCCAGCCAGGTCCAGCTGTTATGGGCGAGTTACCCCATCTCCAAG-CCCAGGTCCCCTGGCTGGAAAAGGGAAAATTGATCCACTCCTGGACGCGTCCATCAc-aggcactgcgccaggcgcgaggacacagctgtggacaaaagatccccaacc----tcgaagttcatcttgatgggagggttattaTCATTACTTTAAATGCCTTTAATTTGAGATTCACTTCCTCTTTGACTCTGAGCCATCTGGAGAAGACTTTGAGATGGAGAGATAAGGATGGCCATCCCATTC----TGCACAGGTT--GCAGTG-----------TGGA------ s mm3.chr5 116147864 900 - 149719773 ttacagagagaaagaATATCATGGTGGAATGGAGCCAGG--------------------TGAGGTTCTACTTTCCTGTAATTTCTCTTTCCTGGGGA-ACTAGCA-AAAGGTCAAGGTCTTTGGGGGCTGA---GATACAGAGAAAGT----------------GAGGGGAGAGA----------AAAGAGTGAGGTGC-----------------TCTCTGTAGATGGGCAGAATATCCTGTCAg-------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtTTTCATAGGTGTTAACTGAAGCCAATTA----------GCAGGGATGTGCACATGGAGAGAAAGAAA-------------GGAGATAGAGAGACTGAGATCT---GGTGCTTGG-------------------------TGTCACAT--------------------AGCCACAACCCTGAAGTACCCA----TGGTACAGTTAAGTTCCCC------AGCACAATGGTCCTTAGTCTAC-GGTGGTGACCAGGTTG------------------------------------GGGCTGCAGTGGCTAGGATGA----GGTAGTGAGTATCTGCCCCCACCAGGAAG---ATGCTGTTCCTGGATAAGGTGCCAAGGGGTAGTAGCAGA-----GTCT--TGCC---TCTTC-CCTGTACTGCTATCTCTGTCTCTTG--CCATGTGCTAACCCTGAGCAGCTCCATGAGGCTCAGGTGGTCTGGTCCAGTTAAAACG-TGGTACCCAGGATGATAAAAGCTGACCTGAGGTCTGCAACAAGCCAGG----GCAACTTCAGG-----------ACCACCAAGTCTCCTGTCTGCTGGCTAGGAATGGGAAACAT-ATCTATCC---GCCATTTCCTTCCC-AGGCAAGGTACCAGGTGCAGGGACCTGGTGGT-CATGTAAGATCCTGACTG----CAGAAGGTCATC-TAACAGGAGGGCTCTTATGCCCA----------TTTTCATTTCAGTATCCTTACCTGTC--ATTCAGAGCCATTC-----AGACTT--AAATGTAGATCTGGTGACTGCTGCTCCCTGCATGGTGTCCAGATTCAACAATGCCATCAACTTCTGGAGACTTT s rn2.chr14 77916243 931 + 107821284 tgacaGGGAGACAGAATATCATGGTGGGGTGGAGCTGGGGAGGGAGGGGCTGTATAGGCTGAGGTTCCATCTTCCTGCAGTTTCTCTATCCTGGGAA-ACAAGGA-AAAGGTCAAGGCCTTCAGGG-CTAA---GATACAGAGAAACT----------------GAGGGGAGAAA----------AAAGAGTGAGGTGC-----------------TCTCTATGGGTGGGCAGAGTATCCTGCCAGAGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCATAGGTATTAAGTGGAACCAATTA----------GCAGTAATGTGCACAAGGAGAGAAAGAAA-----------------ACAGAGAGACCCAGATCT---GGTGCTTGG-------------------------TGTCCCAT--------------------AGCCACAACCCTGCAGTACCAA----TGGGGCAGTTAGGTTCCCA------GGCACAATGGTCCTTGGAATACAGGTGGTGGCCAGGTTG------------------------------------GGGCTGCAGTGGCTCAGATGA----GGTAGTGAGCACCTGTCCTCACTAGGAAG---ATGCTATACCTGGAAAAGGTGCCAAGGGGCAGTAGCAGATGGTAGTCT--TGCC---TCTTC-CCTGTACtgctgtctccctctctag--ccatgtgctaacagtgagtagctccacaaggctaagctggtctggtccagctaaaaca---gtgcttagaatcataaaacctgacctgaggtctggaaccagccagt----gcaacttcagg-----------accagcaagttccctgtctgctgGGTAGGAATAGGAAAGAT-ATCTATCC---AACATTTTCTTCCCCAGGCAAGGTACCAGGTGCAGGGACCCGGCGGT-GATGAAAGATCCTGACTGACTGCAGAAGG-------------AGGGCTCTTGTGCCCA----------CTTTCATTTCAGGCTCCTTACCTGTC--ATTCAGAAGCATTC-----AGACTT--AAGTTCAGATCTGGGGACTGCCACTCCCTGCACGGTGACCAGATTCAACAGTGCCATCAACTTCTGGAGACTTT a score=18908.000000 s hg15.chr4_random 199705 439 + 1219494 GCTATGGCTGTAGAAGGCAGCAAGCCAGG----TGCCGGCCTCCAGGGATG-------------------------------AGGGCATGATGGGGGTGGCAGCCATGGGGATTGGGGAGTAGGT------------------------------------CTGGGCCCTGAGGAGTGGG----------GTG----CAGGGCCTGGAAGCAGCGATGGAGA--ACCAGGCGAGCCCGGCCAGTCCCCAGGGGG-TACGGTGTGAGGGTGGGCAGGCCTGGCTGGGGTTGGGGAAGGGGGGAATGGAG---------------GCGGAAAGGGCTGGGACAG--------------------------------------------------TTCTGAGCAGG-----ACTGGTGGGCTCACCGGGG-TCTGAGGTGGAGCAGTTGTGGGC------TCAAGTTAGAAGAACACGTGAAGCAG-------GGTTGAGGGGACCCAGGAAGGTAGACTTGGGGGGCTGGGACCCTGGAGGCCtgcattaatttcctggggctgccttcacagatgatcacaaactggggccttca----aacagcagagatgtctt s mm3.chr5 116148779 479 - 149719773 GCTGAGGGTGCAATGTGTCCAAGGCCAGGCATTTGCCAGGAGCCTGGGAG--------------------------------AAGCGATGTTACTGGTGGT-GCCATGGAGGGCCTGGGCCAGGTGGCTGGAGCTGGGTGAAAGGACAAACTTCTGTAATGCTTAGACCTGAGAACTGAGAGTAGAGCATGTGTAGCCAGGGCATAGA--CAGTTACTGAAAAGACCAGGAAA--TTTGTAAGCTCTCGGGGGATGAGGCTGTGAGGGTGGA------TGGTTGGG---AAGGCAG--TAGTATGGAGCAGTCTGTGTCCCCAGGGGGAGGCACCGGCCCTG------------------------------------GAGAGACAGCAGCCCTGTGGGCAGACTGGCACTGAGGGGTTCTTCTGGGCCCTACCCTGAAACATCTGTAAGT------GCAAGAGGTAGGA-----TGAAGCCAACAGGATTGTTAAGAGAA---------GTAG---TGGGAGG-------------TGCCTGTGTTCA---CCAGGAGCTGGGTC-----AGTGTTACAGGCCATTGTATCGA----GTTATTCCAGACT---- s rn2.chr14 77917306 546 + 107821284 GCTGAGGGTGCAATACGCCCAAGGCCAGGCTTTTACCAGGAGCCTGGGAATGACTACCAGGATTCCTGTGCACCTTCTACACAGGCAATGTTACTGGCGGT-GCCATGGAGGGCGTGGATCAGGTGGCTGGAGTTGGATGGAAGGGCAAGCCTCTGTACTGCTCAGGCCTAAGAACTGAGAGGAGAGAATGTGTAGCCACGGCATAGA--CAGTGACTGGAAAGACTGAGCAA--TTTGGAAGCTCTCGGGGAA-GAGGCTATGAGGGTGGG------AGATTGGA---AGGGAAAAACAGTATGGAGCGGTCTCTGCCCCCGAGGGGAGGCACAGGACCTGAGGCAACAATGGGCATGAGAGCCTGATCAGGTCCAAGAGAGACAGCAGCCCTGCGGGCAGGCTGGGACTGAAGAGTTCTTCTGGGCCCTACCCTGAAACATCTGTAAGTCTGGGGTCAAGGGGTAGGA-----TGAA-----------TGCTAAGAGCA----------TAG---TGGAAGG-------------AGCCTGCATTCG---CAGGGAGCTGGGTC-----AGTGTTACAGGCCACTGTATCTACAGTGTTACTACAGACT---- a score=41137.000000 s hg15.chr4_random 200144 613 + 1219494 ttcatgtgttctggaggccagaagtctgagatccaggtgtggt--cagagcctcactcccaaggtgttagagactccagggaggctacctcctgcc-tctccagctcctagtgggtccaggcgtttcttggcttttgggtgcattgctccagcctctgcctccatctccgcgtggcctcctcccc------atgtctctg-agtctctgtcttttcttcttataaagacaccagttgttgggtttagggtgcaccctcatccagtataaactcatcttacctgat-tacatctgcagagaccagacctccacagaagaccacagtttgaggctccagatggacgtgaattgggaggggacattattcaccccTCTACGGGGATGGAGGAAAACGG----------------TGACAGGACAGGAAGGA-GGAAGCTAGGATGGCCCCTTAGAGGAGCTGCTGGGCCAGGTGGCCACTTTCACCCCCTTTCCCCTGCCCCCCATGCCCTTGGCTCTCCGTGGGGTTCATCTCCCAGGTGGCCCCCAGCACCTCCTCAAGGCTCTTTCCTTTTGCAGCGCCTCAGAGCATGTCCAGCACACTGTGCACAGCCTGGAAGGCCTGG----GCCAATGA----AAAAT-------CAGCAG s mm3.chr5 116149347 513 - 149719773 tTCATAGG-----------AGTAGTCTGGAATCCAGGCAGGGCAGGGCAGGCTGCTAAC-------TCAGAGCCTCCAGAGAGACCTCTTTTTTCT------AGCCTCCAGC---TCCCAGCATCTTC---------------TTCTTAcagcctctgcttccatctccacatggtcatctctct-gctgcctgtgtctg-ctaccctgccccttcctct----gggacaacagtcattggagtttgggtg-accctgacctagtgta---ttgtcgtgtatactctacctctgcagagatgccactctcagataaggtcacaA---------------GGGTGT--------AGGAGCTGCCATTCAGCTCACCACGGAGACGGAAGTGAATGGAAGCGGCCTAGCAGGCTGGGAGGACAGGACAGATAGATGCCAGGCTGCTCCTCCAGAA-----------------------------CCCCTTCCCGCTGAGCCCCA--------GCACACTGCCAG---CATCTCCTTGGGG------------TCCTCGTTGCTCCTCAC-----CAGTG-CTGGGAGCATGGCCAGCCCCATG---GCATCCTGGAGAGCCCAGCGGTGCCATGGATCTGACAAT-------CAGCAG s rn2.chr14 77917898 522 + 107821284 TTTATAG--------------TGGTCTGGAATCCGGGCAGGGC--GCAAGCCTGCTTCC-------TCAGAGCCTCCAGGGAGACTCCTTTCTCCTGCCTTCAGCTCCTAGC---TCCCAGCATGCTC---------------CTCTTAcagtctctgcttctatcaccacgtggccatctctctctctgtctgtgtctgtctaccctgccctttcctcc----cggacaccgattactggagtttggatg-actctgatctagtata---tcattgtggacactctacctctgcagagatgctgctctc-gataaggtcacaA---------------GGGGGT--------AGGAGCTGCCATTCAGCTCACAACGGGGACAGACGTGAACTGATGTGGCCTAGCAGGCTAGGAGGACAAAACAGATAGAAGCCAGGCTGCTCCTCCATAA-----------------------------CCCTTTCCCGCTGAGCCCCA--------GCACACTGCCAG---CATCACCTCAGGG------------CCCTCGTTGCTCCTCAC-----CAGCT-CTGGGAGCATGGCCAGGTATGTG---GCAGCCTGGAGAGCCCAGCCCTGTCACAGATCTGACAATAAAGCCCCAACAG a score=12169.000000 s hg15.chr4_random 201586 191 + 1219494 CCGCCTCCATCCCCATTCCCTGTGGCCACCCACCTTACCCCAGCCCAGCTCTCCATCCACC---CCCTCAGGAAGCTGAA-CCACGTCTGA----------TCTGCCTGGAGAA---AGCCCGGC--------CTTCCTAACGTGGTTCTTGGCGCCCGCAGGGTGTGGACGTCCCACACCCACCCTTGCCCCGCTCCGTACCACCCACCACATGC s mm3.chr5 116150011 201 - 149719773 CCATTTCCACTCTCATCCCATGTCGC--CCCTCTTGGGCACTGCATTGT------TTCACCTGACCCTTGGGAAGCCAAGCCCACATTTGATTATGTATCTCTAGTTTAGAGGACACCTCCCAGCTCCC----CTCCCTGCTACAGCTCTGGGTGCCTG--GACTGTGGCTGAGCCACCTTCATTCCCAGTTTAACCTGAACAGGCCACTATAGT- s rn2.chr14 77918592 198 + 107821284 ---TTTCCATCCTCATCCCACGTGGC--CCCTCTTGGGCACTGCATTGC------TTCACCTGGACCTTGGGAAACAAAGCCCACATTTGACTACATGTCTTTCTATTAGAGAA---CTCCCACCTTCTCAAACCTTCTGCTGCAGCTCTGGGTGCCTG--GACTGTGACTGAATCATCTCCATTCCTAATTT-ACCTGAAGAGGCCACTGTAGt- a score=109430.000000 s hg15.chr4_random 201782 1915 + 1219494 CACCTGAGGCCT--------CTCC--CGGGCTCTTCTCTCCCTTTCCACCTGCTCGACCCTGGCTCATTCCCCGAGCTCCTGACACT-----GCCTCCAGGAAGCCCTTCCTGGGCCGAGGCACGGCCTCCTCGCCACCCTCCCCAGACAGCAGGCCCATTGTCCAGGGCTGTGTCCGCCCTGCCCCAGGGCGCGGCCTTCAGGGACTGCCCCCGAGGCCTCTTTCATCTTCAAGTCTCCAGGACCACAAGGGAAGTCTTGATGAGGCAAAAC--TGAAGAAgagttaaaagcttgtgtctgcacagaaa-gctgcactcagctttatagcagctttattagtgattgtcaaaacttggaagcaaccacgatgtccttcagcatgtgagtggataaacaaactgtgctacatcccgataatcgaacattattcatgcgctttcaagccatgaagacacacgaggagccctaaacgtatgttgctaagtgaaaagagcaagtctgaagaggccacactgcaggattccaactaggggacattctggaaaaggcagcactgtggagacttcggtagcactatggtaaaaagatcagcggttgccagaggggagggggagggaggggtgagtcagcagagccccacgggggacagtgatgtttagggcagtgtcactgctctgcacggtatt-ataatagtggatgcatgctactatatatgtgtccagacccagagaatatccaacaccaaaatcaaccctaatgtgaactgtgggcttcggttaatgacgccacatcagtatcggct---------------------------catcagctggtacctcctcagtaccagatgctcgaca-----tgagggaaac-----gggggcacataggaaccctctctatgattttctcattttttttcctttttctgtaaacctaaaccttcttaagacataaagttcatcattaattaaaaCATGCAAAAGCTGGTTGGTAAAGACACGAGGTTTTTGCTGCTCTTGAGCATCAATCGGTTTGCGTGTAGCCAGGCAGAAAGTGGCCTGGGGTGAAGCTGGC-----------------------------------CTGGTCC------CCTGCCTCTGGGTCC-AGCCCCCAATTTCCCGCGAGTTTGTGGGGAGGCTGCTTCC-AGTGCGTATG-----TGCTCCAGGTGGGAGGAGGCCAGCTGGGCCTCCAGGCATCTCAGCTTGCT-------TGGTCAAGGCTGCAGGAGGCTCCTTCCCTCCCTGGGGC---TCTCT--------CCTGAGGGCAGGCAGCTCT-------------CTCCCACTCTGCAGGGATGGTGCAAAAAAG---------GCTTGGGCCCTA---CTTGTGGAGCCCCGCCTACCC--TCCTCT--TTCTCTCTCTGCTTGGATGTTCAGAAACCCACTTTCCAGG-AGGGACCTGGCACACAGCACTGCAGCGATGGAAACAGGCCAGGGAGTGGTTGTGAGATGGAAGAGCTGAACCTTTGCCCCCAGCACTGATTGGCTGGCAGCCTTGGCTGCAGCCAGGCCTGGCACAGTGAAAATGCAGAAGGCTGTCCAGGCAGCACCAGCAGGTGGCCA-----------------------------------CTCAGCTCTGTGCCCAGCACGTCGCCAGCCCTCTTTGTGGCCCTGGGCTGCCAG----CCTGGGTCTGCGTGGCCTCTGCTTCTCCCGGGGAAGGGAGCGGCTG-CCTGAACAGCAGCATTGCATTTCTCGGCACTGCAGATGACACCAACCTGCAGGAGGCCccatctgtgctcagggctcccaaaattctctct--------gggctggacttctctccgag-----------cttcacactcaaagctcaagaagcctcctcgcctttctccCAAGTCCACCCCCTCCTGCAGGAGTCCGGTCATTAGCCTGGGGTTGGGGGGCAGTCTCCATCTCTGTCTTTTCCCTTTCCCTTCCATCCCACCCTCCATAGAGTCCTATTCATAGAGCACAGGGATCATGGCTGGCCCTGGCTGCCCCTCCTCAGCCCTGAGCATGAC s mm3.chr5 116150217 1694 - 149719773 CACACTATGCCCATAGCCAGCATCTCCAGGGTCTTCTCTCTCTGCCCTCCCTGTC--CTCTCTCCAGTTCTACTAGCTCCCTACACTTGGAAGCCTCTTTGAGCCCCATGCAGAGCTCAAGCT--GCCTCTTTTTAGTGCTTCTCA-CCAGCGGGCACA----------CTGCTTCCATCTTGCCCC-TAGCGTGACC-TCAGGG--------------------------CAGGACTCCTGAA---------GAGCCT--GTGAGGCGAAACTGTGAAGCAG--------------------ACAGAAC-TCTGCACACAGGTATTT-CCAGCCT-----GTAACCTCCAAAACTCAG-AGTGACTCTGGCATCCTTTATTAGAGAAGCAGGTAAGCAGAGGGGGC-----ACTGAGATGCAAAGATAA-------------GAA----GAGAATGCATCACCAGTCTTACATAGACGCCGATGA-----------------GAAAAGaccaca-------------------gaacattctggaaacggcaa-gctatggggaca--------------gtaaaaaggtgagtggatg---------------gacaaatgaacaggcagca------cacagagga--------tttagggcaatgacatggttccagatgacactggggaaggtagtctcatgtcacttcatc--tgtccgaacc-acagtgagctcaacataagaacagaccctcatggaaaa-----------------gacaccacagactttCTAGGT---------------------------CA-CAGCTCACATACCCTAGAGACCCAGCGT-CAACAGTCTTTCAGAGGGTCTTCTTGGGGACACACGA----------CATGCT------ATCTGCTTCTTTCTTTCTATAAACAAAAACC---------CACAAGCTTAA---------AAGAAATGCAGAGGCCAGCAGTTGAAGGCAGGAGGCTTCTGCTGCT-TTGAGCAT-AATCCATTTGAGGATAACCAAGCTGAAGGTGG-CTGAGGTGACATTGTTAGAATAGGCCAGTGGACCCAAATGTATCATCTCCACTGGTTCAGCCTTCTGACCAGTGGGTCAGAAATCCAGGTGTCCTCTGAG--TGTGGGAAGGCTATGTCCTAGTATGGATGGCATACACTTCTGGAG-----------ACTGG----CCAAGAAACTTGATCTGCA-CCTCTATAGACAC--TTGCGGGAGCCCCAGCC-ATCCCCATGGTCCTTCTACTTACTGGATCTGGGGTGAGGGAACTGTGCACAGTGCTCTTCTTCCATCCTCT--GTATTGGGCAGCAAAGATATCCTAAGGTTGCTCCCAAGCCCCTTTCTGGTCCTATCTGTGC--CCCACCAGTTCTTTCTCTGCTTGAACTTTCTGAAATTCACTTCTCAGACAGGCAGATGGCACACTGGAGTGCCTTGGTGGAGAGGAGCCAGGCATGGGTGGTGA-ATG----------ACATTCACCCTGAACCCAGACTGACTGGAA------ATTCCATGCCAGCCTGTCTGGGTGGACACACTCCAGGACACCTAAGTAG-------AGGGGTCCA-------------------------------------------------------------GGACACCTGGGTGG---AGGGCATCTAAAACACCTGGGTGAAGATGACTCTAGGCTATCTT-----------CAGTTACCCTGAACACTAGC--------CCTCAATTCTGTAAACCTTTTTGGGGTTTGGAGTACATGGCCTGGGTTCCAGGACC-CTATTTTTCCTCTCTAGGAGAGAACTGGCCACCCCTGAGACAGTATTGACCAGGTAGCACACAGGACTTCATGATCCTTGTCACCTTCCTGCAAATTCTGCACGTCCCT---------CAGCTGTTTACCTAAGAGTGCATGGTA---------TATGGCT----CCTTTCCCCTCCCTCCTTCC------AGAGTTCTGTCATTAGAGCACAGAGAGAGGTGCCTGCGAT-GCGGTCCATCTGCAGCACCCAGCACAAC s rn2.chr14 77918932 1751 + 107821284 cacacTATGCCCATATCCAGCAAC--CAGGGTCTTCTCTCTCTGCCCTCCCTCTC--CTCTTTCCACTCCTACTAGCTCCCGACACTTGGAAGCTTC--------CCATGCAGAGCTCAAGCC--ACCT-TTTTTAGCACTTCTCA-TCAGCAGACACA----------TTGTATCCATCTTGCCCC-TAGTGTGACC-TCAGGG--------------------------TAAGACTCA---------------------GTGAGG--------TGAAGCTG--------------------ACAGAATGTGTCCACTCAA-CCTCT-GCAGCCT-----GTAACCTCCAAAACTCAG-AGTGACTCTGACGCCCTTTATTAGAGGAGCAGGCAAGCCGAGGGGCC-----CCCCAGATGCAGAGATAA-------------GAATGA-GAGAATGCATCGCCAGTCTTACGTAGAAGTCGATGG-----------------GAAAAGaccaca-------------------gaacattctggaaaaagcag-gctatagagacc--------------atacaaaggtgagtggatg------------------aattggtcaggcagca------tgcagagga--------tttgggacaatgacatggttctgtatgacactgggaaaggtagcctcatgccacttcatc--tgtccaaacccacagtgagctcaacctaagaacagaccctcatggaaaa-----------------cacatcacggactttctaggtaattgcataccaatgtggctcaccactca-cagctcacgtaccCTAGAGACCCAGCGGATAACAGTCTTTCAGAGGACCTTCTTGGGGATACAA-------------ATGCT------ATCTGCTTCTTTCTTTCTATAAACACAAACC---------CACAAGAGTAA---------AAGAAATGCAGAGGCTAGCTGTTGAAGGCAGGAGGCTTCTGCTGCT-TTGAGCAT-AATCCGTTTGGGGAC--CCAGGCTGAAAGCTG-CTGAGGTGGCATTGTCAGAATGGGCTGGTGTCCCCAACCGCATTGTCTCCACTGGCCCAGCCTTCCTGTCTGTGGGTCAGAAATCCAGGTGTCCTCTGAG--TATGGGAAGGCTGTGCCCTAGTGTGGATGGCATACACTCTTGGAG-----------GCTGG----CCAAGCAACTTGATCTGCATCCTCTGTAGACAC--TTGCAGGAGCCTTAGCCTGTCCCTATGGT---TCTACCTAATGTGCCTGGGCTGAGGGAACTGTGTGCAGTGCTGTGTTTCCATCCTCT--ATATTGGGCAGCAAAGAGCCCCTAAGGTTGCCCCTGACCCCCTTTCTGATTCTATCTGCTCTCCCCACCAGGTCTCTCTCCACTTAGACTTCCTGAAATTCACTTCCCAAACAGGCAGCTGGCACACTGGAGTGCCTCAGTGGAGAGGAGCAAGGCATGGATGATGA-ATGCCACAGCTGGACATTCACCCTGAATCCAGACTGACTGGAA------ATTCCATGCCAGCCTGTCTGGGTGGACACGCTTCAGGACACCTGAGCAG-------AGGGATCCAAGCCACCTAGGTGGAGGGGATCCAATTCACCTGGGTTGAG--GTGAGATGGAGATGCCCCGGGACACCTGTGTGG---GGGGCGTCTAGGACATCTGGGTAAAGATGGCTCTAGGTTATCTT-----------CAGTTACCCTGAACACTAAC--------CCTCAATTCTGCAAGCCTCTTTGGGGTCTGGGGTACTTGGCCTGGGTTCCAGGACCTCTATTCTTCCTCT--AGGAGGGAACCGGACACCCCTAAGAC--TGTTGAGAAGGTGGACCACAGGACCCCATGATCCTTGTCACCTTCCTGCCAGCTCTGCACTTCCCT---------CCACTGTTTGCCTAAGGCTGAGCGGAA---------TATGGCT----CTTTCTCCCTCCCTCCTCCC------AGACTCCTGTCATTAGAGCACAGACAGAAGTGCCTGCG------GACCATCTGCAGCACCCAGCACAAC a score=137752.000000 s hg15.chr4_random 204065 2403 + 1219494 GCAAAAGTGAATGCCATAGCCACTTGCAGCGACCTGGGTTACTGCTGGGGGAGTGGTCCTCACATGCCTGCTCAGGCTGATGAGACAGGACCCCACACTCATCGAGTGGGACCCGCAAGTGTCGCTGCCTCCCTGGCTTTGCTGATGAGACCACAGAGTTGCCGGGGTGCTCATATCCAAGACAGA-AGCAGGGCTGGCCCCGCCCCCGGCTCCCCCACCAAACCTCTGGAAATTGCACCAAGGCCCAGGTGGGTGAATCCCAGTGAACCGAGAATCAGGCCCAAGCAGCTTGGCATCAACCCCAAA--TCCcgcctactcagggcctcagtttccccatctgcaaagtggTGCTGTCCTCGCCCCAGCCGATCATGCT----CCAAATTCGCAGCTGCTGGAGAACTCTCTAGAGGAGAAGGAACA-GCTGAGACACAGCTAAAGCAATACTGGCGTTCACCACAGAAAGAGCAGGTTCCATCCACGGAACTTTCTGGAATCCACATG--AGTGAGGCCTGCCTGA--GAAGCACGTGCAGGATTGGGGTCTCACCCCTGTGACAGTGCAGGACCCAAGTTGGGCCTATGCGGAGGTTCCCAG----------CGCCTTGGACTTGGTGCTGAGCTCTGAGCCGGAGCCCGAACCACATTTCCTCTTTGAAGGTTTGCTAGAAATCTCAAAGGTCAGCTGTTCTCATGTTTCCAGAATTTATTGATTTTGTCTGGGCTGGAAAGGCAACAAAAAGGCTTTTATTGCTGTTT-CTGTGGCTGCACTGGGGAGCGGGGAGAGGATGCACTGCCCCCTGCACCTGTCCCAGGGGCCCGTCGGCCAACATTCAGGCCCCGAGGGGCCCCCATCGCCTGTCCCAGACTCACCC------CACCTCACCCGACCGGCCTGTCCTATTGCGTGTCCTCACATGCCTGTGCCAGCTGATGAGACAAGCCCCCACACGCATGGAGCAGCACCTGTGTCACTGCCTCCCTGGCTTTGCTGATGAGGTGATGGAGTCACTGGGAAGGGCGCATCCAAGCCAGAAGGAAGGCTGGCCCCGCCCCCAG-CTCCCCCACCAAGCCCCTCCCCACCCCAAGGCTCCGGGGAGTCCAGCTCAGCCTCCTGGAATGAGAGGAGACTCAGGGGCACTCCGAGTGCCTCTGAGAAGGGGACAGCCTGTGACAAGGGTGGG----AGAGGCAGAGACGAGAAAAGGAAGGCGAGGGCATGGGCAGGCCGGGCGCAGGGAGCTCTGAGGGAAGCTGGTGCACTGCTGGCCACCGCCTGAACTAtcattcattccctcactcattcattcttcactcacgcatCGCTCCAACCTCCTGGACTGAATTCCCCCTTGTGTGCCCAGCCCCGGCTGATGCTGTCCACCCCGGGAACCGTCAGCCCAGGGCAGCTGTCCGGGAGCCCCTGATCCATCACGGGATCAAGTGCTCCAGGTCCGTGCCTTAGGAAGCCAGGGCCCATCCTTCATGCAGCG-GGCAGG-CTGCACCCGCAGTGTATTCTAGGCTTAGGATCCTATTCTAGGCGGGTGTAAGGAGGCATTGCCTTGGGCCAGCTGGGTG-----GGGTCCCTCTTCAC---CCCCGCCCCGGGGCTGTGCTTGCTCGGGTT---GTTCCGATTCTCACCGCCC--------------AGGGCTGGGAGGCGCTGCAGACTGTGCGTGGGCGTCTTACAGGCTAGTGAAGCAGCAGTGTTCACATCCTACCTGGACAGGTCCCCTCGACCCCCAAG---CCTTG--CTCC---------TCTCCTATAAAATGGGGGTGCT-TCAGTCCCCACCCTCG-CCGAGCGCTGCTCTGGG----------GCCGCTGAGAGGCTGATCCCCTTGAGCTGCCA-TATATTAGACATGCACCACCAGCTGCTGCCATCATGCCGGGTACGTGGCCCTCCCCACGGAGGACAGAGGACCCTCACTGTGGCTGCCGTGGGGACCTGTGCGGAGGAAGCTGGAGGCTGAGGGGCTCACCCCAGGGCTGCTTTTCCCAGGGGGTCCCAGCTTGGTCCCAGCTCCCTGCATGGGTGGCCTTTGTCTCAGCTGCCACCTGTGActgaggctcctcccacccaattcctttctcctttaggagtgtcaaacctgcatcatggtcTTGTCACAGCCAAGCCAGCCCTGA-----GCTCCATCCCCTGAAAGGGCAG------CCCCTCCGCAAGCCCCTTCCTCCCTcccagccctggcacagggcctggcatgtagcaggtgctcagtaaacactcatAGGTGGAGACAGCAGGACAGACGGGAGC--TCTGAGTC-TCCTCCCCTGCAGTCTTGGTGATGAGCCCCTGCaatgaaggggggctgcactgggaagtagtgagcatcccatcatcagaggcatgcaagaggaccaggatacccatttgagggagactttgtagGCACAAGGGTGAAACATGAATCAGCAC s mm3.chr5 116151911 1880 - 149719773 GCA-----------------------CAACATCCTAGGAGACGACTGAGAATG----------ACGTCAGCTCCTGTGCAAGGGTCAGAACC------------ATTAGGGTTCACAAA---------------------GATGTTCATTCCA-------GCTGGGGTGC------CTGAGACAGACATCAGTG---------------------------------------------------------------------------------TCAGTCCCAAGTAGCTGGGCATCAGACCCAAGTCTCCCTCCTTCTCTGGA-ATTGGCTTTTCCATTTCTGAGGTAGGGTTTGCCTATCCCTGACCG-CGATGCT----GCCTTCTGTAAGCGGCTACAGACCTTTCTAGAGCAGCTCAAAAAAGCTAGGACAGCAACAAGGCAGT------------CACAGAGACAGCA-TCTCAGTCTACAG----------------------AACAAGGCTAGCTCCATGGAGGGACTCACAGGACCTGGGTCTCATCCCTGAGTGATTGCAGATCCCAAGGCTGGC-----TGCAGCTCCTCCAGGTCCTCCTCCTCCTAGGACC---------------------ATCCCCCACAGCA--CCCTTTGCCAGACTTTGCTAGAAATCTCAAAGGTCAGCTGTTCTTGAATTTCCAGAGCCTATTGATTTTGTCTGGGCTGGCAAAGCATCAGCAATGCTCTTACTGTTCACTTCTGGGGCTGCAAT-GGGAGCCAAGAGGAGACACAGT---CTCTGTTCCCATCTATGGGGTCTGTAAGCCAACCTTAGGGCC----AGGGCAGCCCTGGGGCTTGCCACACACATCTGTGCAGCCCCTGACTCCACC----TCTCCAGTT---TGTCT-------CCAGTACC--------------------------------CAGTGATAGTG---CTGTCTCCCTCGCTTTGC-------------------------AGGGCCC-----------GAGCATGGTGGCACCTGCTCTGGGCCTGCTTCACCTAGCCTCTTTCCACTCTTAGGACCC--AGAGTACAACTCAGCTTCCTGCAATAAGAGATGGTTTGTGGTAACCC---------------AGGGGCTGCCCAGCTATAGAGCTGGGCTATGGAGGTAGAACTGGAGAAGAGA---TCAA---------AGGCTGTACTCCAGCAGACCCGA--------AATGCACCATGGG----------------------TTCACTTACTTATT---------CCCACACA-----------------------------------TGCCAAGCAC--ACTGA-------------GGATGTAGCAGG--CAGAGCAGCC-------------------------------AGTTCTCCACA-----GCCTTGGG---------------------GAAGAG-GTCAAGCCTGTACTTCCAGGG---CCCAGGCTAGGGATCATGGTCTCAGCTTTTGTCATGAAACTTTCTCTTGGGCCATCTAGGTGATTCTGGGTGGGTTCTCACCTACCCCTATCCAGGGCCATGCATGC-AGCACTGACCTCTTGATTTTCACAGTCCTGCTGACTTAGGCTGAGGCTTGGTGGCCTAGGagaacat--gggagagtcaggcaggtcaggagagttctagt-ttcactgccag-ttggatgaatctcttagtccatgaaaggtccttggcttccgaaccacatccttctgtaaaatgtggaggatGTTTGCCTCTCACCACAACCTAGAGCTGATCTGGGTGACTTCCAAGCC-CCAAGGTTCTGCTCACTTTGACCTGTCATTGTACTG-------ACCATCATCTGA-GTCACTCTG--GGGCAGATGGGC--TCCTGTGGGGGTT--AGGACACACATCATGACATCCCTAG----CTCTG--------------------GAGAGCCATCCTCAGGCTCCATTTGCC------------CTCCATTCCAGAT----------GTGGT------------------------CTGAGATCCCTCCTTCCCCATCCTGCCCTTCTTGATGGAGGTCACACTTATGTCTTAGATTTGTCACAAGTACTCAAAATCATGGAGTTGCTTGACCACTACAGCAGGCAGAAGTGTCTGTTCTCCAAGAGGCAGCC-----ACTGTCACCTGCATGGGCCCTAGCAT-------------AGCAAACCCGCCC---------TAGCTGGGCAAATGGAAACAGTTTCAGTCAACCTCATCTTCAGTCTTTGAAGCAAg-ccctgaaaaggagtgggcacgtgcagggaagtgctgagctttc--tcaccagggccattcaagagagcctgggtgcccatt--aatgagagCCCCTCAGGAAGAAGATGGGTCAGGGACCAGCAC s rn2.chr14 77920683 1902 + 107821284 TCA-----------------------CGGCATCATAGGAGACGACTAGGAATG----------ACATCAGTTCCTGTGCAGGGGCCAGCACC------------ATTAGGGTCTGTGAG---------------------GATGTTCATTCCA-------GTTGGGGAGC------CTTAGACAGATATCAGAG---------------------------------------------CAAGACCCAGA-AGGTAAG----GGTGACT---GAGTCAGGCCCAAGTAGCTGGAC-TCAGACCCCAGTCTCCCTCCTTCTTTGGG-ATTGGCTTTTCTGTTTCTGCAGTAGGGTCTGCCTATCCCCAACTG-TGATACTTACTGCCTTCTCTG-GTGGCTACAGACCTCTCTAGAACAGCTCCATAG-GCTAGGACAGCAGCAAGGCAGT------------CATAGAGACAGCA-TCTCAGTCCCGAG------------TCTGCATGCTCACAAGGCTGGCTCCATGGAGTGGCTCACAGGACCTGGGTCTCAGCTCCAAGTGAATGCAGACCCCAAGGCTGGC-----TGGAGGTCCTGAG----------CACCCATGATC---------------------ATCCCCCACAGCA--CCCTTTGCCAGGGTTTGCTAGAAATCTCAAAGGTCAGCTGTTCTTGTATTTCCAGAGCCTATTGATTTTGTCTGGGTTGGCAAAGCATCAGCAATGCTTTTACTGTTCACT-CGGGGTCTGCAGT-GGAAGCCAAGAGGAGACACAAT---TTCTGTCCCCATCCATGGGGTCTATAAGTCAACCTTAGGGTC----AGTGCCACCATGGGGCTTGCCACATACATCTG-----CCCCAGACTCCGCC--CCTCTCCAGTT---TGCCT-------CCTGTCCC--------------------------------CAACAACAGTG---CTGTCTCCCTCGTTCTGC-------------------------AGGGCCT-----------GAGGGTGGTGGCACCTGCCCTGAGACTGCTCCATTTAGCCTCTTTCCACTTCCAGGGCCC--AGAGCATAACTCAGCTCCCTGCAATAAGAGATGGTTTGTGGTGACCC---------------AGGGACTGCCCAGCTATAG-----------GGAGGTAGAACTGGAGAAGAGAAGATCAA---------AGGCTGTACTCCAACAG-CCCGA--------AATGCACCACGGG----------------------TTCACCTGCTTATT---------CCCACACT-----------------------------------TGCCAAGCAC--ACTGA-------------GGGCAAAGCAAG--CTGGGCAGCC-------------------------------AGTTCTCCACA-----GCCTTGGGA---TCATGTCCATGTC---GGAGGAAAGTCAAGCCTGTACTTCCAGGG---CCCAGGTTAGG-ATCATGGTCTCAGCTTGTGTCATGAGACATCGCCTTGGGCCATCTGGGTGATTCTGGGTGAGTCTTCACCTACCCCTGTCCAGGGCCACTTTT-----CACT---CTTTTGACTGTCACAGTCCTGCTGACTCAGGCTAAGGCTTGGTAGCGTAGGAGAACAT--GGGAGAGTCAGGTGGGTCAGGAGAGTTCTAGA-TTCACTGCCCGACTGGATGAATCTCTTAGTCCATGAAAGGTCCTTGGCATCCAAACCACATCCTTCTGTAAAATGTGGAAGTTGTTAGCCTCTCCCCACGACCTTGAGCTGATATGGGTGGCTTCCAAGCC-CTGAGATTCTGCTCACTTTGAGCTGTCATTGTACTG-------ACCACCATCTGA-GTCACCCTG--GGGCAGATGGGC--TCCTGTGGAGGC---AGGTGACACACTATGACATCCCTGG----CTGTG--------------------GGTCTTCATCCTTGAGCTTCATTTGCC------------CTGAATTCCAGAT----------GTGGT------------------------GGGAGACCCCTCCTCCCCCATCCTGCCCTCCTTGATGGAGGTCACACCTGCATCTTTGACTTGTCACCACTACTCCAAAGCAGGAAGCTGCTTGATTGCTACAGCAGGCAGGAGGGTCTATTCTCCAAGAGGTAGTC------TTGCCACCAGCACGGGGCCTAGCAT-------------AGCAAGCCCGCCC---------TAG---GGCAAATGGAAACAGTTCCAGTCGTCCTCATCTTCAGTCTTTGAAGCAAG-CCCTGCaaaggagtggggatgtgcggggaagtattaagcatcccctcaccagggccattcaagagagcctgagcgtccatt--ATTGAGAGCCCAGAAGGAAGAAGATGGGACAGAGACCAGCAC a score=119144.000000 s hg15.chr4_random 206468 1179 + 1219494 AAAGTATGGCT----------TCTGAAAACTTCTTTCTTGCCTCAAAACAACAATAAAG----CCCTATGCTGGGCGCTCCAAGCTCCATGGGAACGCTGCAGGTT---GAGCAAGT--GATTTGGAAACATCGC-AGTCAACAAAGCTGC---CGTCTCCCGGTGCGCCCCTTCTCGC--TGGGTTCTAAATGAAAGCTGTTCATTAGGGCGACAGGTTTACCATCTTGCAATGAGAATTGCTGGGAGGTTTTTCCCCCTGAGGAGGAGAAATCATG--TTTGAGTAGCGAGCACAGTTGCAGGGGACAATGTTTTCGTGGCTGTGGCTGTGGGAAGAGCTTTATTTGGGGA-TTTTTCCTCTCCGTGTCAGCAGCACAGGAGAAAATGACTCCAGTGAGCTTCGCTGCTGCAGTTTTATGGCACCGCCAGGACGCTGGGTCTGAAATTGTGCCCATTGCTCAGAGCTCAGTATC----------------TGTTCCTGGGAACTGGGAGGCAGCGGTC--GCATCAG---------TGT-----------GGTCTGGAGGTTCCCAGGTTGGGGGCAGCACAGGCCTCT----GGCCCCGGCTTCAGCAGATCCAGCCCTAGCACAGAGCACAGCAGAG-CCTGGGCTCAGGGGAAAAGTCAGGGTTGGGAGCTAGGGAGGGGCCCACCTGGG-------GAAGGCTTGCTCACTCACTCGCTCAAGCAGGGGCGGGGCTGGAA-GAGGGCCCTCAGGGCAGTCCTGAGCCGAGGACACCACTGCCACCAGGGAGCCAGG------CCAGA--GGCCAGAGGGAGAACTTTCT----CCATACAAGC-------CAGGTTTGAAGG----------------------------------TGGCGCAGAGGCAGGCTGGGGCTCAGCAGCCGAGAG-CTCCATGCTCCAGGGGCACAGAC---CCCTGCCCTCGAGGCTGTGAAG-CCCAGGGTGTGGCAAGGGAGTGCCGTGCAGGGCAG-GACACCTGGAGGCAACTATCAGTGCAGGCCCAAG-AGACACCAGCCTG-CAGCTGCTCAGGGGCCAGTGGGGCTTCAGGGAGGAGGTGGGCAAAGCAGTCTTACCTCCCCTGCAGGGCCGCCTCCCACCTGAACGACCGCCTGGCGGCAGTGTCTGACGTCCCTGTGCAGAATCATCTCTGTCCCCACCGGAGGCCCCTGGGGCCGAGTGGCT-TCACTGCAATTTTG------GGAGCGTGTGGGACCT--------GCCCTGGGACCCCCTCTTCGTGGGGCTGCCAAGCTGGGGTATCATACTGCAG s mm3.chr5 116154036 1187 - 149719773 aaaataaatcttt--------tttaaaaaatCTCTTCTTAGCACAAAACTGCAACAAAAAA--GCCTGTGTCTGGCATCTC-AGTCCCAT----------CAGATCTGAGAGCTAGTGAGAGTT---AACTTTGCAAATCAACAAAGCACCACCCGCCTCCTGGTGCGCACCTTCTCACATGGAGTTCAAAATGAAAGCTGTTCATTAGAGCGACAGGTTTACTGGTGTGCAGTAGGGACTGTGTGGGGCTGTTTCCCCTTGAGGAGGAGAAATCATAGATCTGAGGAGCAGGAACGCTTGCAGGGGACGACATTTTAGTGGCAACAGTGATGGGACAAGTTTTATTCGGGGA-TTTTTCCTCCCTGTGTCAGAAGCACAGGAG-AAACAGCTCCACTGAGCGCGGCTGCTGTGCTTTAATGGCCCCATCAGGACACAGCATTTGAAATTACTCCCATTGCTTAGAGCTCAGAATTGTTGCAGGGAGCCAGGTGACTCTGGGAGCTGGGTGTTTGCAGCCTAGCTTGAGGGCTGTGCCTATGACCAATCTAGGACCAAGAGGGTCCTAGATTGCAGACAGAGG--GTCTCTGACAGGCCATGTGGTCAGGAGACAT-------GTCCAGAGCCAAGCAGAGCCCCCAAACTAATGGAGAA--------TAGAAACTAGAA----------------------GCCAGTT-----------------GAGAAAAATCAGGGCTGGGT-TTGGAGCCTCAGT---GGCCTGGACAAAGGACAACACTG---CCTAGAAGCCACAAGCCACCCAGAATGGACTGAGGAAGAACCTTCCAGGCCCTCTGAAGTCGTTAAGCAGATCTGATTGTTACATATCTCCATTCAAAA--------------TGGCTCTAATGCTTTATCTCTCCCAATGACAGAATG-ATCAGGGTTGCAGAGCG-CAGATGTGCTCTGGCCTAAACAGTACTGAGTTCCAGGCAGCAGGAAGAGAGTCCCCTGGAGGGCAGTGACACC-AGAGGCCACCAGAAACATGGACCCAGGCAGAAACAAACCTA-CAGCTTCCTACAAGTCA---GGGCTCCAGAATGGAG---------------------TCTCAGCGGGACTGTCTACTCCT----CACCCTCTGGACCGCAGGACCTGATTTCCTGGTGCAGAGCTGCCTTTCTTCCCACCTTGGGTCCCAGGTGGGAAGAGTCTCTCCCTGCTTCTTAGCCTACCAGCCCTCATGAGACCA--------GACCT--GGCCCCCTTTCCTTGAA--TGCTGGGCAGTAATATCAAGCTATAG s rn2.chr14 77922830 1227 + 107821284 agaataaatctttattttttttttttaaaatCTCTTCTTAGCTCAAAACTGCAGCAAAAAAAAGCCTGTGTCTGGCACCTC-AGTCCCAT----------CAGATCTGAGAGCTGGTGAGATTT---AACTTTGCAAATCAACAAACCACCACTTGCCTCCTGGTGCACACCTTCTCACACAGAGTTCAAAATGAAAGCTGTTCATTAGAGCGACAGGTTTACTGTTGTGCAGTGGGGACTGTGAGGGACTGTTTCCCCCTGAGGAGGAGAAATCATGGTTCTGAGGAGCAAGAACTCTTGCAGGGGACGGCATTTTAGTGGCAACAGCTATGGGACAAGTTTAATGCGGGGATTTTTTCCTCCTGGCGTCAGAAGCACAGGAG-AAACAGCTCCGATGAGCGTTGCTGCTGTGCTTTAATGGCCCCACCAGGACACAGCATTTGAAATTACTCCCATTGCTTAGAGCTCAGGATTGCTGCCGGGAGCCAGGTGTCTCTGGGAGCTGAGTATTTGCAGCCTAGCTTGGGGGCTGTGCATGT-----------GGCCAAGAGGGTCCTAGACTGTGGTCAGTGGGAGTCTCTGACAGGCTGTGCAGTCAGGAGATCT-------GCCCAGAGCCAAGCAGAG-CCCCAGTCTAACAGAGAA--------TGGAAACAAGCACAGGGTCCATCCTTGAAGAAATGCCAGCT-----------------GAGTAAGAACAGGGCTTGGTGTGGGGGCCTCAGT---GGCCTGGACAGAGGCCAGCATTG---CCTAGAAGCCACG-------CAGCATGGGCTGAGGAGGAACCTTCTAGGCCCATGGAAGTCGTTGAGCAGATCTGGTTGTTACATATCTCCACTCGGAAACAGACCTACAGATCAGCTCGACTGCTTTATCTCTCCTGATGATGGAATGAATCAGGGTTGCAGAGGGACGGACATGCTCTGGCCTGTACAGTACTGGG-TCCAGGCAGCAGGAAGAGAGTCCCCTGGAGGGCAGTGATACC-AGAGACCACAAGAAATATGGACCCAGGCAGAAACAAACCTACCAGCTTCCTGCAAGTCA---GGGCTCCAGAACGGAG---------------------TCACAGCAGGACTGTATACTGCT----CACTCTCTGAACCTCAGGACCTGATTTTCCAGTGCAGAGCCACCTTCCTTCCCACCGTGTGCCTCAGGTGGGAAAGGTCTCTCTCTGCTTCTTAGCCTACTAGTTCTGGTGGGATCACTAGAGTTGACCT---CCCTCCTTTCCTTGAA--TGCTGGGCTGTAATATGAAGCTACAG a score=17731.000000 s hg15.chr4_random 207915 292 + 1219494 GGGG-----AGGAGTTT--CATGGGGGGGAGGAGTTTGGTGGG-------------------------------------------------CGGAGGAGTGTCATGTGAGGGGAGGGGTTTCATGTGGGGGGAGGAGTTTCATATGAGGGGA--GGAGTTTCGTGTGAGGGGAGGAGTTTGGTGTGAGGGGAGGAGTTTCGTGCGGGAGG-AGGAGTTTGGTGT-GGGGAGGAGTTTCGTGTGGGAGGAA---GACGT--GGGGAGGAGTTTTGTGTGGGAGGAGGAG--TTTCGTGTGGTG----------GGGAGGAGTTTCATGTGAGGGGAGGAGTTTCATGTGGCGGAAGAGTTTCATGTGGG s mm3.chr5 85444668 307 - 149719773 GGGG-----AGGACTGTTACATGGGGGGAGGACTGTTACATGG-------------------------------------------------GGGAGGACTGTTACAT--GGGGAGGACTGTTACATGGGG--AGGATTGTTACATGGGGAGGACTGTTTGTTACATGGGGGGAGGACTGTTACATGGGGGGAGGACTGTTACATGGGGGGAAGGACTGTTACATGGGGGAGGACTTACATGGGGGAGGACTGTTACAT--GGGGAGGGTTGTTACATGGGGTGAAGAC--TTACATGGGGGGACTGTTACATGGGGGGACTGTTACATGGGGGGAGGACTGTTACATGGGGGAGGACTGTTACATGGG s rn2.chr14 43725349 335 + 107821284 GGAggggttagggatttagctcagcagtagagcacttgcctagcaagtgcaaggccctgggctcggtccccagctccgaaaaaaaaaaaaaagaaaaaaAAACTGGGT--GGGGAGGACTGTTACATGGGGGTAGGACTGTTACATGGGG-----TGACTGTTACAT--GGGGAGGACTGTTACAT--GGGGAGGACTGTTACATGGGG---AGGACTGTTACAT-----------------GGGGAGGACTGTTACATGGGGGGAGGACTGTTACATGGGGGGAGAACTATTACATGGGGGGACTGTTACATGGGGGGACTGTTACATGGGG---GGACTGTTACATGGGGGCCAGCTATTGCACAGG a score=2420.000000 s hg15.chr4_random 208207 58 + 1219494 AGGA---------GGAG-----TTTCGTGTGTGGGGAGGAGTTTCATGTGAGGA------------GGGAGTTTCGTGTGAGGG s mm3.chr5 85444975 84 - 149719773 GGGACTGTTACATGGGGAGGGTTGTTACATGGGGTGAAGACTTACATGGGGGGACTGTTACATGGGGGGACTGTTACATGGGGG s rn2.chr14 43725618 50 + 107821284 GGGACTGTTACATGGGG----------------------------------GGACTGTTACATGGGGGGACTGTTACATGGGGG a score=3359.000000 s hg15.chr4_random 208265 103 + 1219494 GAGGAGTTTCATGTGAGGG---------------GAGGAGTTTCTTGCGGGCGGAGGTGTTTCGTGGGGGGAGGAGTTTCATATGGGGGAGGAGTTTCATGAGGGGGAGGAGTTTCGT s mm3.chr5 85445059 118 - 149719773 GAGGACTGTTACATGGGGGAGGATTTACATGGGGGAGGACTGTTACATGGGGGGGACTGTTACATGGGGAGAGGACTGTTACATGGGGGAGGACTTACATGGGGGAGGACTGTTACAT a score=1691.000000 s hg15.chr4_random 208368 11 + 1219494 GTGGGTCCTGT s mm3.chr5 85445177 11 - 149719773 GGGGGGACTGT s rn2.chr14 43725458 11 + 107821284 GGGAGGACTGT a score=126088.000000 s hg15.chr4_random 208381 1686 + 1219494 TGCTGCCTGCTGAGGGCATAGACATGTGTCCCTCCATTTCTGTTCTCTCCCTTGGCCCGGCTCAGGCCAC------GTCCAGAGAAGCCACAGAAACTCCAGTAACTGTATGTCAGCTGAGACCCCAACCCAGAGCCGTGGGCGGCTCAGGGCTCTGGGAGGCAGATTTGTGGGGCAGCTGCCTGCCTCCCTGCAAGGTCCATCCCCGGCGAAGTCACAGCCCTGTTGGGAGGGGCTCCCACTGCGTCATGAACGCTGGTCCCCGGCTCACCT-----CATGTCGGGGGCACCTGGGGATGGAATTCCAATCCCAGCCCCAGCCTAGATCAGCCCTGTGGCAGGTGCGGGCCGCCCTCTGCTCCCAGCCTCGGCCTCCCACATCCTGGGGGATGACCAGGCGCCTCACCGAGCTTTGGGAGACAGGGTCCTGGTAAAGGGTGCGCAGGGTCTCCAAGCTGCACGACATAGCAGGTGCTAAGCAACTCAGCTGTTGGCAGGGTTTgttaagagaggtg-caggaatgtgctgaggtcacacaggg--gggacaggac---agagccaggatctgaacccCCC------------TCAGGGATAGGCCATTCTAGACTCCTGGCATTGCATGTCACAGGCTGGGTGGGGACCTGGCAGGAGTCCAGGGCCAGCCCTTAGGGCAGGTGGAGCCA--------CAGGGCCTCTCC-TTCTCCAGGAGCAGA------------GGTGCCCCA--TCCTCCTGCCGGCTGGGGGCTGGGCCGAGGCCTCTGGCGAGCCGATGGGAGATA--AGAGCTCTGGCTGGAGCTGTGCAGACAGGCTGGTAGTTTTCCGTCAT--CCCCGCAAATGACAAACCTTGCAGGAGGCCAGGTTGGGCTG-GAGGGTCCCTCCTCCTCACCTCTGAGCAATGTGACCAGGCTTACCTTTCCAGAACC-TCTGGGCTGGGCTTGGGAGCCAGTCTCTCCCACCCTCTGCAGGCCCCGGTGGCTATGCAGCCACCCCATG---------GCTTACTGAG--CCTGAGAATAAATTTTAACTGGGGTGCTGCACTTTACAGTTTACAAAGCACGCCCACACCCACCTCCAGG---AATCTCCTGCCACCCACTGCCCCTGTGAAGTCCACATCAATATCCACATCTACAGAT-----GGAGAAGTTAAATAATGCCAagagg-acagaggggactctgtgcttgctgctcaatttttctatggatctaaaactgct-taaaaaata--gtctattCAACaaaatgtcacgtaaatggagccagggagcacgttgactttgaggcgggcttc-------tctggctttgcggctcacccaggcctttgcaagaagttgcagcttgccctcttcactgctgagtagtattccattgtctggaggcacctgcagtttgtttatccatttaccagt-tgt-----ttagggttgtttccagttt-tttgctattatgaataaagctatcatgaacattAAAA-----ACAAAACAAATACTGG------CCAAGGGTTGCACAGGTGACAGGCTGCAAAGCCCA---------GCTCAGCAGGGAACCAGCAAAAGCCATGTGGCTGCCTCCAGAGTCAACAT--GGCCT----------GGACCTGCCCTCCGGGGAGCCAGCGC-CCGAGCTGGCCTGGCTGCTGCACAGCCATGTGACGGCCACATAA-CGGCCACCTCCTCCCAAGGCTCCCTCAGTGCAGGCCCACAGGAGGCATGGCCTTGGGAGGAGCTAGGACATGGATCACAGCCTT s mm3.chr5 116155976 1529 - 149719773 TACTGCCCAGAGTGAGGACAAGCAGGCG-CCCTCTTTCTCGGTTCT---------CCAGACTCAGGACACTCTCTTGTCTAGAAGTGCTGCAGAGGTCCCAGTTACTGCGGATCGGCTGAGACCTTAATGCAGAATTCTGTATTCCTCAGGGCCATG---TGCAGATTGACAAGAGAG--------------GCAGAATTGTCCCACTCAGGAG---CAACTATGTCAG-----------CCTGACCCATGTG-GCTGAGTCCAGGTGCCCTTTTGTCCATGGGGCTGAGTCCTGGGGACCCAATTCTCATTTCAGT---------------CTCCATGG-----------------ATGC----------------------------------------------------TAAGGAAAGGAGTATGTTAGAGCAGTGCCTACTTTGCCCCATAGCCACTCAAGACAGT-----------------GATGCTAGAAGGACTTGTTCAAATGGGAGTGTGGAATCTGCTGAGGTTGCAGAGTGGTGGAGCAAGACTAGATACCCCAACTCTCAATCATCTGTCCCCTTCCCACCAGGGACA------TGTATTATTCTAG------GTTTCATGA-------TGGGGTTTAG---------------AGATTGTAGAGTCGCTGGAACCATGGCACATCATGGTCCCTTCATTCTCTGGAGGCAGAAAGGAAGTTCATGGCATTGCAGTTCTCCCAGCC--CTGAGTGCTCTCC-----TCTCTAGCACACTGATGGCAGATAACAGAGCCCCTG-------------GACCGGCTAGTAGTTTTCCATCATTACACAGCAGATGACAGACCTCTGAGGAGACCAGGTCAGGTTGCGAGGATC---CGTCCTCAGTTCTAAGCAATGAGACTGAG-GCACTTTTCCAGAATCTTCTGCATTGGA--TACTGGCCAGATTCTCCCACCATCCATAAGACCAGTGGGCAGGCCAGCCAGCCGCTGTCTCTGAGAGTTTATTGAGACTCTGATAAGGAGCCTTGGCCAAGGCACCACACTTGATAGCTGATAAGACTTTCCCACA-----CTCTGAA---GAC------ACGCCCACTCTCCCTGCTAGATCTCCA-GAGTACCCTCATTTACAGATGGAGAGGAGACATTCAGTAATGCTGAggggcatatggttg---ctgtaccttctgctcg--tttgctgtgaaccccaaacggctgtaaagactaagatctCCTAAGCAAAATGCCATTT-GACAAAGTCAGAGATCACACAGCCCTCAGGCCGGGCTCT-------CCAGCC--TGCACCT---------CTCAGCACTGAACCATAGCT-GCCCTCCCCCC------------CCCCCCAATTCggatgcaccagt-gtttg---atccatttatcaatctgtgagtgttggggctctttccaggttattttctattattaataaggttcttataaacattAAAAAAAACACAAAAAGCACAACAGAAAGCCCCGAGGGTCACACATGTGGGGAGCCACAAGGCACATTGCACAGGGCTGAGCAGGTA-----TAAAAACCAAATGGTT--CTCCAGGGCCTCCAC--AGCTTCCCTCACTTAGGAACTGCC--TCTGGGAGACAGCATCCCAGCCTGGCCCTGCTACCACA------------GAACACTCGCTTTGCTA-CTTCTCCCAAGG---ACATAGGATAGGAACAGGAAGGGAGTGGCTTCTGAAGGAGCCAGGAGATGGATCTCAGTCTT s rn2.chr14 77924838 1512 + 107821284 TACTGCCCAGAGTGAGGACAGGCAGGC--CTCTCTTTCTCAGTCCT---------CTAGACTCAGGACACTCTCTTGTCTAGAAAGGCTGCAGAGG--CCAGTTACTGTGCGTGAGCTGAGACCTTAACACAGAATCCTGTATTCCTCGGGGTCATG---TGCAAATTGGCAGGAGAG--------------GCAGGGTCGTCCCACTCAGGAG---CAACTATGTCAG-----------CCTGCCCCATGTG-GCTGAGTCCAGGTGCCCTTTTGCCCACAGAGCTGGGTCCTGGGGACAGAATTCTCATTTAAAC---------------CTCCATGG-----------------CTGTTACCAG-------------------------GGAACAG--------------TAAGGGAATGAGTATATCAGAGGAGT-CCTGCTCCGCCCCATAACTACTCAAGACAGT-----------------GCTGCT-GAAGGCCTTGTTCAGATGGGA--TTGGAATCACCTGAGGTTTCAGAGTGTTGGAGCAGGACTAGATGCCCCCAGTCTCAATCTTCTGTTCCCTTTAC-CTAGGGACAGG---TTGTGTAGTTTTAG------GTTTCACGG-------GGACCCTTAG---------------AGATTATAGAGCAGCTGGGACCATGGCACAACATGGTCGCTTCATTCTCTGGAGGCAGAAAGGAAGCTCATGGCACTGCAGCTCTCCTAGCC--CTGAGCACTCTCC-----TCCCTAGCATACTGATGGCAGATAACAGAGCCCCTG-------------GACCGGCTAGTAGTTTTCCATCATTACACAGCAGTTGACAGACCTCTGAGGAGACCAGGTCATGTTGAGAGGATC---CCTCCTTAGTTCTAAGCAGTT---CTAAG-GCATTTTTCCAGAACCTTCTGAGCAGAA--TGCTGGCCAGTTTCCCCCATCATCCATAAGACCGGTGGGCAGACCAACTAGCCACTGTCTCTGAGAGCTTACTGAGACTCTGATAAGAAGCTTTGGCCAAGGCTCCACACTTCATAGCTGATAAAACTTTCCCACA-----CTCCGAAGAGGAC------ACGCCCACTCTCCCTGTTAGATCTCCA-CAGCACCCTCATTTATAGAT-----GGAGACATTCAgtgatgccgaggggcatatggcgg---ctgtgctttccgcttg--gttgctgtgaaccccacactgctgtaaagactaacatctCCTAAGC-AAATGCCGTGT-AACAGAGCCAGAGATCGCACAGCCCTCGGGCTAGCCTCTTGTTTTCTCTGCTTGTGTGCAT---------CTCGGcactgaaccatagct---------------------------cctcatctggaggcgctagt-gtttg---atccacttatcaatccgtggatgttggggctctttccaggtt-ttttctattattaataagactcttataaacatCAAAAGA---GCAAAAGGCATAGCAGAAAGCCCCGATGGTCACACCTGTGGGGAGCCACGAAGTGCATTCCACATGGCTGAGGGGGCA-----CAAAAGCCAAATGGTT--CTCCAGGGCATCCACAGAGTTTCCCTCACTTAGGAACTGCC--TCTGGGAGATAGTAT-----------CCTGCTACCACA------------GAACACACAA-TTGCTA-CTTCTCCCAAGG---GCATAGAATAGGAACGTGGAGGGAGTGGCCTCTGAAGGAACCAGGGGACGGGTCTCTGTCTC a score=406397.000000 s hg15.chr4_random 214271 5406 + 1219494 GCTCTGAAACAGACAGCCCTGAGCGGGCCCAGGTGACATCCATCAACTTCCTACAGCCCTCCTGCCCTCTCCCGGCACAT----GAGC---AATCGTCTGTTTATTCCCAATTTGCAAATTACGCCCCTGCATTCA----GCAAACCCCACCTTGGCAGGGAGCCCCAGCCGTGGC--ACTGGCGACCGCCGGGCTCCGTGGGTTACTGAACGGTATCGAGAG-GAGAGAATCCCTCTATTG--TTTGCCTCCTATTTGA-----ATAGTGGCGGAAA------------CAACAGCAATCAATTTTGAATAACAGTTTCATTTGGACTAATTAGAAGCGGACTGATTTTGCTTGAAATTCAGTTTGCAATGGCAGCACACTCTAGGAAACGGGTAACTG----ATTTTTCACCACAAACATGTTGGCATTGTGTGTCCTGGGTGGGGTGATCTTTAAAAGCAGCCTCATTGTTCTGAATTGTTTCTAAGATGACATAATAAACACAGAGCCAGGCCTTATTCCCATTGTGAAGGGGCACAGCT--CTGCTGTTT-----------TT--ATGGAGCTG-CTGAAGTTTAAGTGCACGGGTTATGTCAAAAATAATGAAGCAATGCCGGTGGAGTGTGAGCATTGAGCCCCGTCTGATCCCATTGGCTCAACGTGTAATCTAGGCATTGTTTGCAATGGAAAAGGCAGAGCGACAGCTCAAAGTTAGGTGGCGTGGACGCTGGATGTGGAAGATAGAAGACAAAttggagaagtcacgtgcacactctgagccggttttctcatctgtagaatgaagctaatatcgtggacggtgacggctcgccgagggatcccctgtggtggggtgagtatggagcacattccagcgtctggctctcagacagcatctctctatggcagcccctttctggagctcagttttctcatctgtaaaatgggtgcatcgatcctgcctggcagaattatgaaaagcacatgcacagagcacctggcccaaagactggcacatggtgggcacacatcgaacactaactGCTGGGTTCACTGTCATGTCTGCTCTTTGTCATTATTATGCTTGAAGCCACCCCTCTCTGGGCCTCTCTGCAGAGTGGGAAGGGGGCTATTGAATGAGACGGCCCCTCGGGTATCTCTTTCCCCAGCACTCGCTAAGGAGTCTAACAGTTGAGTT--AGGCTTCTAAAGGCGGTATGGAAATGCCTGTTTTCATCGATGCTGCAGTCGGTTAAGAGCTGATTAACCGGGGAAAAAGCCCGCCCCCCACAAGAGCAGAGCAGAC-ACTGCAGCAGCCGGGCC-GCACGTGAAGTGGAAAATCGTCCCCCGCAGCACCAGCCCCCAGC-TCCCAGCACGCCGGCCTCTT--GCTGTAAGAAGTTTCTCACCGACAGCCTGGGGGGCCCGTGTCCTGGCACAGTGAGGACGGCAGGAGTGGCTGTTGGATTTGGAGTCCAGAGATGATCCTTTTAGGACTTCCACATGGGAGAGGACAGGTGGCTCCACACCGCGGGGGAGGCCTGCTCTGCCCAG--CTGCCGCCTGGCTGGATTACTCACTGTCCCTGTGCCCCGCTGGGCTCCATGCACTGAG--CGGGGCAGTGTCTAGTCCAGCCTCT-GGGACCTGGGGCTGGGGAGGGCAGGGTTGGAGGCTCCACGGGCGCTCTGGAGACGGGGCCTGGTCTGAGTCGTGAAGGC-CATGTGTGAAGCTGTCACGTGACACAGGGCGGGAAGGGCACTCCTGGGGGACAAAGCATTAATTCACAAAGGC-------GTGGGGCACGGCCAAGCCAGAGCAGGAAGTGGGATGAACGGAGGTGAGGACAGAGGAGTTGGCAGCGA--TTGTGACCTGCCCGGGAGCCCTAGG---AGGGTGGGATTGTGCTGGGCCAGTGTAGGCCGC---------------ACAGCCACAGGCCAG--------------TCTGGGA----------CACCGGGCTG-GGAGCCACTGCCC----CATGGCTGTCCTCCCCCACAGCCTCCCCAGTGCAGA--GCCAGGGCCTGGTGGGGAGTGTTGCTGGAATGAATAATAAATGGCCCAGTCTGGTGCAG-CTGGAGATGGAGGCCAGGACGGGGATTGGACAATTCCCCCACCCCAATAGGGAATCTGGCATGAATGTCCCGCTGGGGTTCTCTGCAGTCCCCAAAGCCCTCCTCTGGAGGCAGAGTTTCCAGAATTGTGGAGATCTTGTGGGACTGGTGGTCTTCTAGGTGGGTCTAGCTGCCAACTCCTAGTCTATAGACCTTCCTGTCAACCATGCATCAGGTGGTGGAGGGAGTTCGTATCCTGTTCCCCTTTT--------------------CTCCATGGCTGCCAGGCAGCTCTGGGCATGTTTTGTGCTCGGACATAAG----GGCAGAATGTCTTTAACTGAGCTTTCTGGGCCAGCGCCCCACCTCTACCTTGCATGGTTTGACTCCTTATCAGGACCATCACAACACCATTGTACCCAAGGCTTTTACTAGGAGCAGCCACAAACCCTCTTGGCAGGAAGGAAGGGCATTTTCGGTCCCCAGGGCTTTCTTTTGGCCCGGAGTTTGCAGTTGACTCTGCTTCCCAGGCAGATTTCAGAGGGGTGGCACTGAGCCCTGCTGGAGTAGAGGCCCTGGCCTTGGCAGGAGACACCGCAGCCTATTTACACTGGTGGTCAGGCAGGGCATGCCCCAGGGAGCCTGTCAGATCCCCAGTCTCCCCATCCTCCTCCACTGCCTGCTGCAATCCATGCTCTCCACGGTCCTGCTGGGTCACGGGGGTGCGGACCCCCGGGAGTGGGGCCAGAGGTCCCCTGGCCAC-------------TCAAGGGAAACCCGGTGGGAGGACAACGGGGACCTCAAGATGGAAAAGCTTCCCCTGGGCCTTGGAGTCTTAGGCATCTCCC---TCCTCTGCTCCTCAGCTCTAGGGACTCT-CCTATCTTTGTC--AGCCCCCATCTCACATCCATGTCATGACCCTCAGATCCCCCCTGGCACGTAGCGGAGGCTGCCCATG--CCTGCCCAGGGACGGTGGAGGCACCTGCAT--AAAGGGGTACCTGTGGCACTCCGCACAGGGCCCTCCGCACAGGGCTGCTCCTCCCCCACCCCTTGCACGTGGGGGCCACCACGGGCTGACGGGAGTGGGGACATG-------GAGGGGCCGTGGCTGTCCAACCAGCCTCGAGATGGGCCTGCAGGCGCCGTGTG--TTTTGATCCGACACGGCACGGAAT-ATTTGAGCCCTGCCGATGGATGTGATAGAAAAATACAGCCGGCTGCCAGCACAGCCGGGAAGGGCGGCTTCCTCGCCAGCAAGTGCCACGGCAACGTGTTTCCCCCACCCTCCAGCCCCCACCCCCGGAGTCGGGGGCAGGATCCAAAGCCTGGAGCTGCTTCTATAAAGTACTAACATTGCTGCCTGCACCAAGGAATATTTCCTTTTGAATTCCATACTGAGCTGCAATGGAATATTTGGATTCTTTCTTTTCCCTCCTTTCCTACCAACAGCCATAGGATTAAAATACAGGAGTTAATGAAAACATATGCATGTCTATGTATATCTGGTAGGAGCTGCATCTGTGACAGGCTTGGGCCAGGTACACAGGAAC-CCTGAGCAGGACGGCGTTCGAGCCAGCACCCTCCACACAGGGCAAGCCCTCCTCCGTC-GGTAGTGGCTGCTTTATTTTATTTTGCCTGAAATCTCCC----------AAGAGCCCAACGGGGAGCTCTGCCCAGGAAACCGGTCGTGGAAAACGCTGCTCTG-TGGCTTGCTTGGGACGGGGT---GAGATCAGAGCCCAGGCTCTCTGCAGAGGGACCTTTCTGAGTCCACAGTTTGCTCTGCCCCCTCACC------CCTAGGGGTCCCTGGCCACACAGTCACCTCTAGGCCTCAGTTTCCACAACCACATATGGGGGTTGACATCAGGCCACTCTGGATCCATGAAGTCGGCATGAAGAAGTGAGGCAGGCCC---AGGCCTCGTC----CGTGGAGAGGAGAGCCACTCAG------------GAAGTCAGGGG-CCGT-GGTGGACAGGTCGGCAGAGGGGAGGGCCCTGCTCTGGGCGTTGAGAAGTCCCCTTGGCGGGTGGTTCCTGGGCTGGGTTTGGAGGCACTCGGGGCTCATCTTaccctcggggtgggtgtcagtgcccc-cttcatggatgaagacaccaggactcagagcaaggtgacacgtgtccctgcagcaggcagggtgagaagccaggtttcTGTCTCTGTTTATCCAGCTGAAAAGAAAGTCTCTCCAGGCGGCAACCAAGATCGAGTG-GTGAACATCTGCC-----GGCTGCAGTCCCGGCCATAGCCCTGGAGGGTGTGACTGGCAGGGTC-----AGGACGGGAAGAGGAGGAAGGTTTGCTGACATTCTTCCCCGAGCgtgtaccaggctgcgtgccctgctgtatcctcgaagttaatctcccaggatccctgggtgtggggggg--ctgtggttatccccttgcagggaggaggatctgcagttcagaggtgacatgctcagtcggccacactgctgagcaggtgacagggcaggctccagccctgggAGGTTGCATTTCCTCTGCAGACCTCACAGCCCCCAGGGGGTCAGATCAAAACCTGACACTCTGTCCAAGCACCCTCCCACCA-----------GCTTCTCCCCTGCAGCCTGGCACACGGCCCCTCTGTCCAGCCTCCTGTCTGCATTGTCTCCCCCTCCCCATG---CTGGCACCCCATTTCCTAAAACACACTTGCACCTCCTACCTCCAAACCCTTGCTCATCATGCTGTGCCTCCACGTGGGGTCTGCCCTCAGCTGTGGGAAGTTGCCCA-TTCCTGAAGACCTCCCAGGAGGCAGTAGGAAATGGTGGAGATAC-TCAAGAAATACTTGTTATCTGGTTGAAtttggggccaggaaacctgggccctgt-tgggtcttatcaccagctgtgtgacctcaggcaggttaatccacctctctgagtcccaTGAAATGTACGAGT---------TATCCCAT---GAAATGCTGGTGCTCTCAAGGGAAGGGTGCCCTGGGCGGGACTTGGGGTCTTGAGTGCTGGCAGGTGAGGGGTTGGGGGTCTGCCCTCCCGTCTTGCAGTTGTGAGTTTTGGACCCC-TCCTGCCGGCTTGGTAAGATGCAGATTCTGG-AGCAGAAAT--------CCTGAGCTCTGGAGTCTTTTTCATGTGTGTACAGTGATTCTCTCGCAGCCCAAGGCCTGCCCTCAGAGTGTCCCTGGGTGCGATGTCAGCCATGGAGTCTCTGAGGTGGGGTCT-CCTGTGgtcccaggctcaggggatagattgcccaacagattggcagg-------cctggcagggcccaagagggctcccaggaccccctccacttcccaggtggggcaccgaggcccagagagcagggatttgtctgagccagtaca-------------acagctccaggacaag---------ctgggccaacagttcaggac------------tccctgcccaggcctgGT--CGGGGGAGGT--------CAGGGA---------TGTCCTCATCGGCCTTGACTGGCC s mm3.chr5 116159183 4658 - 149719773 GCCCTGAGGTAGACGCCTCTGAATATGCTCAAGCAAGAT-----GAGTGACAGCCACTCTTCTACTCTCTCTGGGCATAGCCTGGAGCCCACATGGACTGGTTCTTTCCAGTT-----------CCCCTCTGCCAAGAGGGCAAGCCCACCCTTGGCTG-----TCCAGTTGGGGCTGTCTAGC-----CAGGGCTC------GTATTTAGCGAGACCAAAAATAAGATGATGGCTCTATTGTCTTTGCCTCCTATTGAATCCTTATGGAGGCAAAAA---------------CAACAATCAATTTTAAATAACGGCTTCATTTGAACCAATTCAAAGAGGGCTGATTTTGCTTCCAATTCGATTTGCGATGGCAGCACCCAGTAGGAAACCGGTAACTGAATTATTTTTCACCACAAACATTTTGGCATTTTATCTCCTGGGTGGGGTGATCTTAA-AAGCTGCCTCATTGTTCAGAGTCGTTTCTAAGACGACGTGCCAAACACAAAG-CAGGCTGTATTCATATTGCCATGGGTGCCAACCTGCCACAGCTCCCACAGAAGGACTAAGGGGGTCTGACTGTGGGTTAAGT-CACGGATAATGA---GGATAATGAAGCAACTGGAGTGGCATGTAGATCTTGGGCACTGACTGGGCCTGTTGACCTAACCTTTAATCTAAGTGTTATTCGAAAGGGGAAGAG--------ATGGCCAGA-CTAATCAGCATAGGTTCTGTCCACCAAACACA----TCAGTTTGAAGCCGTCCAGTG----CTCCAAATCTGTTTGCTCAGCTCAGAACTGAACTTGACA--GTGG-TGGTCA------------GGATAATGTGTTGGGGGCAGAGTGGTGGGGCATGGCCTGCATCTGGCTTCCA-------------------------TCCTTGGAGCTCAGTCTTCATGTCTGATAAATGGA-----CATTCCTGATCGG-------GTGTAAGAGGCAGACACAGAG--------------------GCAGGGTGGGCATGC--CACACAGTAGGTCCC----------TGATGCTTGTTCTTTGTCACTGTTGCCCTTTAGGTCTTCCTTAT-----GCTCATGGTGAAACGGGAAGGG---TCTGCAGCAGGAAGCCTGAGTGGGCATCTCTCTCCTCA-TGCTCAGCATGCAGGCTAGCCCCTGTGCTGCAGGCC--------CAGT---GAGATG-CTCCTTCGTTGAGAGTTGCAGTCAG-CAGGAGCTGATCAAACTGGGGAGAAACCCGCCCAC--CAATATCTGAACAGCCGGAGGTAGCAGCCGGGCCTGCACTTGAAGCGGAAA---AATCCTTGCAGCATCAGAGTGGAGCAGGGCAGAGCCTGGGTCTCTT--GATGTTGCAAGCTTCTCA----------------CCTTTGCTGTGAC-----------------------------------------------------------------------------------------CATCTCAGTGG--------TCAGCACAGACCTGATGCCTAA---------------------------GCTGG------------GAGGCAGGGGCAGTGCCTAGCTCATCCTCA-AGGGCCT-------------------------------------CTCTGGAGGTGAAATCTG---TGAGCCAGGCAGACACAGGTGCTAGGGTGGC-TGTGACTTAGG-----------------------CTGAGCACTAGTAAGCAGAGGC-------AGGGGGCTGAGTGCAAACAGAG--GTAACAGCGATG------GGCAGGGACATGAGAGGTGGCCTTGAGCTCAGGACAGATCTG-GCACGCTTCT---GAGGTAGGTTTGTCCTGGGCCATGGGAGCCAGCTGGGAAGAGTCTGGAAGAGCCTTGTGCCAGCATCCTAATTCAGTTGTGGGAGTGTGGAAGCCACATAGCTATGTGGCCACAGTTTCAA-TATGGCTG---TGACCCTCAATATCCTTGATTCTGATATTTAGGGCC----------TGTGGCTG-----------------------CTGATGGGGACTGGGCCTGGAGACTGGGATGGTG-----------------------CAGTGACCTGAGCA---------CTTGGGAGCTCTCTGAGGTATCTGAAAACCCTTCCTGGGGTCAGATTCTTCCTAGTTGAAGAGGTC-------------------------------------------CTGGTCTCTAGCTTTTTCTGTCAACCCCACATCAAGAACTATGTG-----CATATCCTGtttctctttttttcttttctttttttttctCTCTTTGACTACCAGGCGGCTTTGGGCCTGGTTTGTGTTCAGACCTGAGGGCAGGCAGGATGCCTTTCACCCGGCTCACT-ACCCAGCATCC--TCTCTGGCCTGAATGGACTGATTCCTTATCTTGCCCATAATGATCCCTTTGT-CCCAGGGCTTTTACTGTGAGCAGCCACAAATCCTCTTGGCAGGAAAGAAATACATTTTTGCTCCCCAGGGCTTGCTTTTGGCCCCGAGTCTGGAGCTGACCAAGCTTCCCAGGCTGGCTTCAGAGGACT-GTGATGCACCCTGCC------------------------GGAGGCACCCTGGCCTTTTTGCCCT------------------------------CTGT------------------------------------------------------GCTGCCTTGGTG------GGAGGTGCAGGAGGTGGAGAGGGAG-----ATGTGCCCTTATTACACTGGGTGGGAAGTAAGAGAAGGCCTACTGGGAG--CCACAGGGCCTTC-------TCACACCATCTTTTGGCTGTGGAGAC--AGGTCCCCACCACTTCCTCTGTTCCTCAGTTCCAAGGACTCTACCTACCATCAGTGAAATCCTCACCCCACACCCATAGACTGCCCCTAAGATACACCCAG-------GAGTAGGTTGCAGGTG-CCCTAACTAAGGGGAATGCATGGGCTGGCGCTGGAATAGGCAAC-TTAGTGTTGACCACAG--------------TGCCATCTCCTCTACTCTCTCCTTACATAGGGGCTATCACAGGTTCATGAAGCTGAGGGTATAACTGGATGAAAAGCCGCAACCTCCCAACCAGACTCAAGATGGGCCTGCAGGCACTGTATAAAGTTTGAACCAACACTGGGCTGAATGACTTGAGCCCAGCCTGTAGATTTGATATAAAAATACAGAC-GCTGCCAGTGC-TTCAGGGAGGGAGGCCTTCTTGCCATCAGGTGCCACAACAGTGTG--CCTCCCATCCTCC-GCCCCCACCCC----------GGGGGGCTTCAGAGATCCGAGCTGCTTCTGTTAAGTATTAGCAAT---------CCCGAG-------TTCTTTTGGATTCTTTCCTGAGCTGTAAGGGGATATCCGGATTATCTTGCCCCACTCT------ACCAATTGCATCCGGGTTAA---------------GTATACTCACATGTGTCCGTGTGT-----------GCTG---------CAGGCTGGGGC-----AAGCAGGGGCAGCTGAGCT-CACTATACTCAGGACAGCACCTTGCTTTCAGGGCCTGCTTTCCTCTACCTTGCCGGGGTAACTTCAGGTCATCCTGCCCAAATTCGT------------CAGCATC-TATGGCAAG----GCCCAG------AGTCATG-----------TCTGGTGTCCTTCATGGAGTTGGATTGAGGGCTCAGAATGTGGGCTCTTTACATCTGGGTTTTCCAGCATTTGCAGTT---TCTGTCCCTCTCTCCAGCTGCCTCAGGGACCTGGGC--CATAGTCACCTCTAGGCCTCAGTTTCCCCAACTAGAGACAGAGTCTGACA-------ACACTGGCTTTGTAAAAAAGACCTG--GAAATAGAGGTGGCCTTTAATGCCAGGAC----CATAGAGACCAGGTCTATCACAGGACTACCACAGGAA--TAGAAG-CTGTTGGCCCACAGCTC-------ATGAGGCCCCTCCTCCATACA------------CTAGGGGTGCAG---------TGTGTGTGGGAACA----GAGCTCATAGCACCCCAGGG--AGATGGGAGCACCCCACCTCATCCTCAAATGATGTGAGTCACAGAGTGAGGCAGCAT--GTTCCCAGGGCAGGC-------------------CTG--TATGTTTAACCAACT---------GCCTCTCCAAGCATTGATCCTGA--GAGCATATAAACAGCTGCCCCACTGTGTGGAGCACAAACCAGAGCCT---AGAGCATCATTTCTGGGATTAGGAAAGGAAAGGAAACCTGTTAGGGTTTGTTGACA----GCCCC-------------GGTGGAGATCCAGCTACATTCACAGAGCTAATC-CCCAAGAGGCCTGGCTCTGGGCTGA--CTGCCCTTTCTGCCCCCCAGGGC-----CCTTGGAGCTCACAAGCGATCAGCTC--TAGGCCACCCTTGTCTGT--ATAACAGGACA-GCTCTGG--CTGCCAGGCCAACACATTTCTGCAGAACTCAAAGTCTCCCAGGGAC----TCAAAACTCCACCCCCTTAT------CCCCCTAACCAGGGTGAGA---TCTCTTCCTCTTCAGTCTGGTAGCCAGACTTTCTTTGCAGTCTCCTGT-TACTCTCTCTTTCCCTACCCACAACTCCAGGATGCAGTCTCCTAAAACACAACTGTCC---TTTTCTGCA---CCTGGTCCAT--------------GCCTGGATCCCTCCCTCCTCTGTGAGAA----TCCA-TTCCCCACAACC-------------TAAGGGTTGGTGAAGACCTATCTAGAAATTCTTATTTTATGACTGAATTTTGAGCCAGTGAAGCCGAACCCTGTCTGTGTCTTATGGACAGATGTTTGATTCCAGACAGGTTTATTCACCTCTTTGAGCTTTAAGAAATGTGCCTGTAGCAAACA-CATAGAATCCAAAAATGCTGCTCTGCTTAAGGCAAAGGT--------TGGATTTGGGGTTACAG-TTACAGAAGGATGAGAA---------CTGCCTCCCTATTT--CATTGGTTA--TCTGGGCTCTATTCTG--GGTGCTCTGAGATGCAGATTCCAACAGTGGCAATTCTGAGGCCCTGGGCCCAGAAGACCTTTCTATAAGCACATAGGA---------------GAATCCCACCATC----TTTTCCCTAGTAGGA--TCAACTGTGCCATTCCCTATGT---ATCACCCCCAGGCCCTTGACCGTGCCTTTGGAC-------CATATTGGCAAAGTTCCCTCATAATAGGACCAGAGACAGCT--GAGATCTCCC--------------------------------------GGATCCAGCTTAGCCAGCATATTCTG-TCCTCTCACCACTCCAGACTCAGTTTCCCCATCTGGGCCTA-AGCCAAACATAAAGTAAGCCTTTCACCACCTGA----AGTGATGGTGGAGTCTGACACTGCAGGGACACTGTGA-GATCCACAGTGG--TTGAAGAGCG s rn2.chr14 77928363 4671 + 107821284 GCCCTGAGGTAGACAC--------ATGCTCAAGCACGAT-----GAGTGACAGCCACTCTTCTGCTCTCTCCAGGCACGGCCTAAAGCCCACATGGAGTGGCCCTTTCCAGTT-----------CCCCTCTGCCCA-AGGGCAAACCCACCCTTGGCTG-----TCCAGCTGCGGCTGCCTGGC-----CAGGACTC------TTATTTAGCGATCCCAAAAGTCAGATAATCGCTCTGCTGTCTTTGCCTCCTGTTGGATCCTCATGGAGGCaaaaaaaaaaaaaaaaaaaaCAACAAGCAATTTTAAGTAACGGCTTCATTTGAACCAATCCAAAGAGGGCTGACTTTGCCTCCAATTCGATTTGCAACGGCAGCACCCAGTAGGAAACCGGTAACTGAATTATTTTTCACCACAAACATTTTGGCATTTTATCTCCTGGGTGGGGTGATCTTAAGAAGCTGCCTCCTTGTTCGGAGTCGTTTCTAAGACGACGTGCCAAACATAAAG-CAGGCTGTGTTCACATTGCCATGGGGGCCAACCTGCGGCAGCTCCCACAGAGG--CT--GAGGGTCAGACTGTGGATTACGT-CACGGATGATGG------------AGCAATTGGAGTGGTGTGTCGGTCTTGGGCACCGGCTGGGCCTGTTGGCCTAACCTTTAATCTAAGTGCTGTTTGAAACGGGAGGAG---GGGGAAAGGTCAGA-CTAGGCAGCATAGGCTCTGTCCACCAAACACA---GTCAGTTTGAAGCCATCCAGTG----CT-----TCTGTTTGCTTAGCTCAAAACTGAACTTGA---------TGGTCA------------GGATAATGCATTGGGGATGGAGTGTTGGGGAGTGGCCAGCATCTGGCTTCCA-------------------------TTCTTAGAGCTCAGTTTTCATATCTGTTAAATGGG-----CGTTCCTGGTGGG-------GTGTAAAAG----ACACAGAG--------------------GCATGATGGGCGTGA--CACACAGTGGGTGCC----------TTATGCTTGTTCTTTGTCATGGTTGCCCTTTAGGCCCTCCTTAT-----GCCAGAGGTGAAACGGGGAGGG---TCTGCAGCAGGAAGCCTGAGGGGGCACCCCTGTCCTCA-CGCTCAGCACACAGGCTAGCCCCTGTGCTGCAGGCC--------CAGT---GAGATG-TTCCTTCCGTGAGAGCTGCAGTCAG-TAGGAGCTGATCAAACTGGGGAGAAACCCGCCCAC--CAATATCTGAACAGCCGGAGGCAGCAGCCGGGCCTGCACTTGAAGCAGAAA---GTCCCCTGCAGCGTCAGAGCAGAGTAGGTCAATGCCTGGGTCTCTCTCGATGCTGCA-GTTTCTCA---------------ACCTTTGCTGTGAC-----------------------------------------------------------------------------------------CACCTCAGCAG--------TCAGCACAGACCTGATTCCTGC-------------------TGT-----ACTGG------------GAG--ATGGGAAGTAGCTAGCTCATCCTCAGAGAGCCT-------------------------------------TTCTGGAGGTGAAATCTG---TGAGCCAGGCAGACACAGGTTCGAGAATGGG-TGTGACTTAAG-----------------------CTGAGCACCAGTTACCAGAGGCCGGGGCGGGGGGTGGGAGTACAGTCAGAG--GTAACAGGAATG------GGCAGGGATGTGAGAGGTGGCCACCAGCTCAGGACAGGCCTG--CACTCTTCTTCTGTGGTAGGTTTGTTCTGGGCCATGGGAGCCAGCTGGGAAGAGTCTGGAAGTGCCTTATGCCAGCAGCCCCATTCAGTTGTGGGAGTGTGAAGGCCACACAGCCACATGGCCACAGTTTCAAATATAGCTG---TGACCCTCAGTGTCCCCGGTTCTGATGTTTAGGGCC----------TGTGACTG-----------------------CTGATGGGGACTGGGCTTGGAGACTGGGCCAGTG-----------------------CAGTGAACTGAGCT---------CTTGGGAGCACTCTGAGGTATTTGAAAACCCTTCCTGGGAACAGATTCTTCCCAGTTGAAGGGGTCATGTG----CTGTGGACT-----------------------TCCTGGTCTCTAGCTTTTTCTGTCAACTTCACATCAATAACTGTGTG------ATATCCTCTTTCTTTCTT--------------------CTCTGTGGCTGCCAGGCAGCTTTGGGCCTGGTTTGTGTTCAGACCCCAGGGCAGGCAGGATGCCTTTCACCCGGCTCAGT-ACCCAGCATTC--TCTCCGCCCTGAGTGGACTGATTCCTTATCTTGACCATAATGATCCCATTGT-CCCAGGGCTTTTACTGTGAGCAGCCACAAATCCTCTTGGCAGGAAAGAGATACATTTTTGGTCCCCAGGGCTCGCTTTTGGCCCAGAGTCTGGAGCTGACCCGGCTTCCCAGGCTGACTTCAGAGGACT-GCGCTGCACCCTGCT------------------------GGAAGCAAA-TGGCCCTTTCGCCC-------------------------------CTGT------------------------------------------------------GCCGACTTGGTG------GGAGGTGCAGGAGGCGGGGAGGGGG---CGATGTGCCCTTATTACACTGGGTAGGAAGTAAGAGAAGGCCTAGTGGGAG--CCACAGGGCCTTC-------CCAGACCATCCTTTGGCTGTGGAGAC--ACGCCCACACCATTTCTTCTGTTCCTCAGTTCCAAGGACCTTACCTACCACCCATAAAATCCTCACCCCACACCCACAGACTGCCCCTAAGATACACCCAG-------GAGAAGGTAGCAGGTGTCCCTAGCTAAAGGGAATGCATGAGCTGACACTGGAACAGATACT-GTAGTGTTGACCACAGGGCCCTGAG---GGTGCTGTCCCCTCTACTCTCTCCTTATATATGGGATTTCACAGGTGCATGAAGCTGGGGGTTTAACTGGATGAAAAGCTGCATCCGCCCAACCAGACTCAAGA----CCTGCAGGCGCCGTGTG--TTTTGAACCAACACTGGGCTGGACTATCTGAGCCCAGCCCATAGATTTGATATAAAAATACAGCT-GCTGCCAGCAC-TTTGGGAAGGGCGGCCTTGCTGCCATCGGGTGCCACAGCAATGTG--CCTCCCATCCTCC-GCCCCCACCCT----------GGGGGGCTTCAGAGATCTGAGCTGCTTCTGTGGAGTATTAGCAAT---------CCCGAG-------TTCTTTTGGAATCTTTCCTGAGCTGTAAGGGGATATCCGGATTATCTTTTCCCACTCC------ACCAATTGCATCCGGGTTAA---------------GTATACTCACGTGTGTCCGTGTGT-----------GCTG---------CAGGTTGGGGC-----ACGCAGAAGCACCTGAGCA-CACTATGCTCAGGACTGCACTTTGCGTTCAGGGCCTGTTTTCCTGCACCTTGCCGGGGTGACTTCAGGTCATCCTGCCGGAACTCTTCTGGAGGCTGTACAGCATCTTACTGCGGG----GCCCAG------AGTCACA-----------TCTGAGGTCATGCATGGGGCTGGATAGAGGGCTCAGGATTCGAGCTCTCTCTATCTGGGCTTTCTAGCATTTGTAGTT---TCTGCCCCCCTCTCTAACTGCCTCAGGAACCTGGGT--CATAGTCACCTCTAGGCCTCACTTTTCTCAGCCATTGACAGACTCTGGCA-------ACTTTGGCTTTGTAAAGGAGACCTA--GGAATAGAGGAGGCCTTGAATGCCAGGATGGTAGATAGAGACCAGGTCTACCACA------------GAA--TAGAAATCTGT-------CAGCCC-------ATGAGGCCCCTCCTCCATACA------------CTAGGGGTGCA--------------TGTGGGAACA----GAGCTCACAGCACCCAAGGG--AGATGTGAGCACCCCACCTCATCCTCCAAAGATGTGAGACATAGGGTAAAGCAGCAC--GACCCTGAGACAGGT-------------------CTG--TCTGCTTAGCCAGCT---------ACCTCTCCAGCCACCCGTCCTGA--GAGC--ATAGATAGCTGCCCCATTATGTGGGGCACAAACCAGAGCCT---AGAGCATCATTTCTGGGATT-----AGGGAAGGAAACCGAGTAGAGTTTGTGGACA----GCCCCAA--------TGAGATGGAGATTCAGCTATATTCACAGAGCGAATC-CCCAGGAGGCCTGACTCTGGGCTGAAGCTGCCTTTGCTGCCCAGCAGGGC-----CCTTGGAGCT--CAAGTGATCAGCTC--TAGGCTGCCGTGCTCTGT--GTAACAGGACA-GCTCTAG--CTGCCAGACCAACACTTTTCTGCAAAACTTATAGCTTCCCAGGGAC----TCGGAGCTTCACCCTCTTGT------CCCCCCAACCATGGCAAGAAGGTCTTTTCCCCTTCACCCTGGTTCCCAGACTTTCTTTGCAGTCTCCTAT-TCATCTCTCTTCCCCT-CGCACAACTCCAGGATTCAGTCTCCTAAAACACAATTGTCCCTTTTTTCTGCA---GCTGGTCTAT--------------GTCTGGATACCTCCCTCCTCTGTGGGAA----TCTATTTCCCCACAACC-------------TAAGGGTTGGTGAGTACTTATCTAGAAATTCTTACTTTATGACTgaactttgagccagtgaacccaaaccctgtctgggtcttatggctggctgtttgatcccaggcaggtgtattcatctctctgagcttcaTGAAATCTGTCTGTAGCAAAAGTCACAGAATCTAAAAATGCTACTCTGCCTAAGGCAAAGGTGTCTTGGGTTAGTTTGGGGTTACTGATTACAGAGGAATGAGGA---------CTGTCTCCCTATCT--CATTGGTTA--TCTGGACTCTATTCTG--GGTTCTCTGAGATGCAGATTCCGACAGTGGCACTTCTGTGGCCCTTAGCCCAGAATACCTTTCTGTAGGTACATAGGA---------------GAACTCCACAATC----TTTCCCCTAGTGGGA--GCAACTGTGCCAGTTCCTATGT---ATCA-CCCTGGGCCCTTGACTGTGCCTTTGGAC-------CATATTGGCAAAGTTCCCTCTTAATAGGACCAGAGACAGCT--GAGGTCTCCC--------------------------------------TGATCTGCCTTAGCCAGCCTGTTCTGTTCCTCTTGCTGCTCCGGGCTCAGTTTCCCCATCTGGGCTTA-AGCCCAACACAAAGTAAGCATGTCACCACATGAACTGAGTGATGGTGGAGCCTGATGCTGCTGGGACACTGTGATGATACACAGTGG--GTGAAGAGct a score=271275.000000 s hg15.chr4_random 219677 2614 + 1219494 ATGTTCTCCACCCCTCCCCTGCCCCCACTGCTGTCTGTATCTCCCCACCTGTGTCTGA-----------------GACTAGCACACAGCAGGTGTG-AGCATTAGCAC--------ATGTGCCAGCTGTGGACACGGCTGGGAGAGCTCTTCCCAGCTGGGGTATCCTGAAGACCCATCATCTGGGGTGGAAGCCAGGCAGCTGCG-GCGAGGGGGTT-----------------CTCCAAGGGCCAACTCTGGCAAGTCAGGTCC------------CCCTGCTCTGGAACCTGACTTCGCGGACGGGGGCTTGCAGAAGAACACAGGACCCAGGGCTGACCCCTCCCCAGGCAGACCCTGGCCCCCCATGCCAAAGAGAGAGGTGGGTATCCAGGATGGATCTGGGCTGGGCTCAGCAGGCAGGGTCTGGCAGGGGAGGGTACACATAGGGAAGCCCAGGGGGGCCTCCCAGGGATGGGAAGGGGGACGGGAATGGGGAATGGATGGTCACAAGCAGGAGGCCTGACACAGCCCCCACACGCCTACCGAGCTGT------CTGTG-CGTGTGTGTTGGGGGGACCCCTGCCCAGCTCCTGCCAGGCGCAGGTCCCGCTTTTGCCCCTCCCCTCCAGCCATCCTGGCAACTTCCAGGCCCTGTGACACGGCTGAGTCTGAGTGGTCCCTACACCATGAAGGCCCAGCACCAGGAAGCCCACCTTGGTATTCTGTCCCCCACTTTCCACTGCCCTTCCTCAAGCAGCAGTGTGAACAGTGTGGACACCTGCTGGG-CCTGACGGTGGAGCAAGGGGGAAAGGCAG----GGCTGCACTGGGAAGA--CCCTGGGGGCACCACAGGAAACAGGCCGGCCCCAGGCCCCTCTCCAGACATTGCTGGTTTGTTCCACTCCACTGCTCTGGGGCCTCAATGACTTTCAGTTTGTTTCGGAAATAAGAAAGTGCCTG----TTGTTCAACCTGGCTCTGGCCAGGCCTCTGGCCTAAGAGTGATGGTGTGGGGGCTTGCCGGCCTCACGCCCACCCTC-----------------------------TCTCCACCCAAGAGCCACGCCCA---CAAAATGTTCAGAGCCAGGAGGACTAGCT------CAAAGCTACTCTCAGTCTTGGACTGGAAGAGCCCCACCTCTTTCCACCGGAGGCCCTGAATATCAGAGTGGGGAAGGGCAGGGGGCAGGGATGGGAATGCAGGGAAGA------CAGTCCCCCAGAATCTAAACTTGGGGTCAACTTGGGGGTTCTAGGCTCCTTTCACCTCTTCGCTACTCTCAGCACAGGAATTTTGAGTACATATTTTCCATGTACATAAAGGGTTAGCTTGAGAAAAAGCAAGACCCCTCCTTCTCATGCAAG-AAGGAAGTTGTAACCCGGAGGCCCAGGGTGCCCTCCGTCCAGCATTGTGGGGTGGGGGAGATGGGGGAGGGTGTCAGGCAGGGTGAGGGTCTGGAAGATACCCCCAGCCCCCAAGCTCAAGGACTGACTGCGGCACCCAACA-TTAGATTACAAAGGTTTATTT---AGAAAATAGTTTGGTTGT-TTTGGCTG---TTGTTTTTGGCAAACATTTAAATACTTTCAGTAATCAAAGATTGTCGGTGCTTTCTCCTTGCCCCCTGGCAGCCACCCCCCGACTAGGTCCTGGAGAAGTCAGCCCTTGGTCAGACGG-GGATGGGGAG-TGGTAGTGTCTTTGGGGGGCTCCTTGCTTGCCCATTTAGGGGGCTACCTCTGCCACTGCTCTCTAAAACCCTGA----CCTCACAGCCACACCTCGGCAGGGCTCCC---AGAGCTGGATCCAGGCAGGGAGCCCCAGAAGCAGCCCCTTGCTGAGGGGGGAAGGCAAAGGGGTCTCCCCCTCTCTCCTCCCCACTCCCTGGAGCCCGGCTATCTCTCTGCCAAGCTCCTGCCCTGCCGCACCCTCCCCTGCGCCCTGGAGGCCAATCCATCCCCGGGTCTCTGGGAAAGCTCCCCCGTCCGGGCCGCCCCTTCTGCCCAGCCCCGAGCGCGGAGCTGTCCAGGAT---------------TCCCAGACGGGTGCGAGTCACTGCCTGAAGCCCCTTCTCCTCCGTCGGAAGAGGATGTGCTTAAAGGATCGCCGGAAATCCTGGTTGAAGACCGTGTAGATGACCGGGTTGAGCGAGCTGTTGCAGTAGCCGATCCAGAAGAAGAACTTGAAGAGCGGGCCGGGCACCTGGCAGGCCTCGCGGCAGATGCCGTACAGGCTGTAGCTGAAGAAGAAGGGGAACCAGCAGAGCACGAACACGCCCATGACCACAGCCAGCACAAAGGTGAAGCTTTTCCCCCGCGCCTGGGCCACCTTGCGGCGGCACACGCTGCTGCGCGCCCGGCGCCGGCGCGACAGGAAGAACTCGACGGAGCGCGAGCTGGCGCGCGACAGGCGGCCACCGGGCCCCGGGGACCTGGAGGCGGTCAGCGCCCCCGACTCAGccgcccccggccccgccccctgcccgtccgcaccgcccgcgcccccctccgcgcccgctcgccgccgcccgccccGCCGCAACGCGCCCCGGCGCCGCCGCCTCTCGGCCGCTGCGCTGCTCTCGTCCGGATTCAAGTCGGCGGGCGGGGGCGCGCAGTGCCCGTTCTCGCCTGCGCCTGCCGCCGCGCCCAGCCCGCTCTCTGCAATCCGGGAATGCCCAACTGGGCCGACGAGGGCGCGT s mm3.chr5 116163841 2281 - 149719773 ctctctctctctctttccctctctccctctctctctctctctctctctctctctctct-----------------ctctctctctctcctcttgtggtgtgtgtgtgt--------gtgt-----gtatgtgtatgtatg-------tattgtggggtagggtgt--------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTTGTG-----------TCCCAAAAGACAGCTTTGGCAGTTCAGGCTAGAAAGGAGAAAGGACTGCTCTGGTGTCTGACTCAG-GGACAGGGGCTTGGGGAGAG----------CAGGACTAAT--------------------------------------GGGGTTGGGGACCCAAGAGAGACACAAGCT---------AGGCAATCACTG-------------------------------------------------------------------------------------CAGGTATCCTGGCAAGATCCCTACA-ACCCACCCAACTGCAGTGAGCTGGGTCAGAGGTGTTGAGGCCACT---------CTCCCAC----CGCAGGTCCTACTCATAACTTTCCTCCCAACCTACCCTGGGGCCTTCCGGGAGTGACCACAGCG--------------------GGCTACTAGAGTTCAG-----TGGGTCCTGACTTGG-------------AGATAGGACGGTCCT--------CAGAAGTGT------------TTTATGCCGGG--------GCTGA-------GAAAAGGTAGAGTGGGCAGCACTGGGGAGAAGTCCTGGGGG-----TGGGGGTCTGGACCTTCCCCTGCTCGTCAACAG-------------GTTC----TCTTTGCTCT-GGGCCACAGTGACCTTGGCTTCGTTTCAGAAGCAA-----TACCTGGGGACTGTCCAG-ATCAGCCTGGCCA----CCTAGCAACTAAGCAAAGCCAC---------CTGGCCACAAGTCCACCCCATCTGTGGGGT--AGACTTCTTGGG-----TCTCATCCCA----CCTTGCCCACTTCAAAAGGC----AACCGGAAGAGCACGTTGTATGCCAGAACTACACTAGG-CTCTGAGTGCAGATGTCT---------------GGGGCCCTG-------GAG---------------------GGACGGAATGTGGGGAGGAGACACCCCTCCTCGCCGAATCTAAGTCTGGAATCGGCTT-GAGGCCCTCCATTCCTTT-GCCTCATAACCACTTGAAG-AAAAGAAGTCCGAGTATATACTTTACATATACCCAAATCCTTTACCCGCTTTAA-----CCCCTTTCTTCCTCATGAAAGAAAGGCAGTTAGAATTC-AGCTTTCAGAGCACTCT-------ATACCTTAGTGTGTGCCTGTTGGGGGTATGGGGAGCTCAGGG-GAAGATCTGGAGAGTTCTCTGA-CACCCTGGCTTAAGAACTGACCAATGCACCTGACACTTAGATTACAAAGGTTTATTTAAAAAAAAATGGTTTGGTTGT-TTTGGCTGTCATTGTATTTGGCAAAC--------AATCTCAGTAACCAGAGATTGCCTGTGCTATCTCTCCTCCCCCAGACAGATGCCTTTT--TCAGGTCATAG-GAAGTCAGCCCTTGCTCACAGGGAAGACCGAGAA--GGGGG------TGGTGTGCTCCTTTCTTGGT------GTGGTTTAGTTGT----CTGAGCTCTAAAGCCCTAA----GTTCACAGCCACACTCCACAGAAGCCTTCTCAGGAACTGGATCCA--CAA-----CCTAGCTACAGCCCCTCGCTGAGATGGGAAGGCAAAGG----TCTCCCTTTCTCCTCCCCACTCCCCAAGGCCCAGTTGTCTCTC-GCCCAGCTCCTG-TCTGCCACATCCCACACTGTGCCCTGAAGTCCA------CCCTGGGACTCTGGAGAGACCACACTG------TTGGTCTCTCTGTCTA--CCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCAGGTCCAGGAGGCCAGAGGGTCATTGCCTGAAGCCCCTTCTCCTCCTTCGAAAGAGGATATGCTTGAAAGAGCGCCTGAAGTCCTGATTGAAGACAGTGTAGATGACCGGGTTGAGCGAACTGTTGCAGTAGCCGATCCAGAAGAAAAACTTAAAGAGCGGTTCTGGCAACTGGCAGGCCTCACGGCAGATGCCATACAGGCTGTAGCTGAAGAAGAAGGGGAACCAGCACAGTACGAACACGCCCATGACCACCGCCAACACGAAGGTGAAGCGCTTCTCGCGTGCCTGGGCCACCTTGCGGCGGCACACACTGCTGCGCGCCCGGCGCCGACGCGACAGGAAGAACTCGACGGAGCGCGAGCTGGCCCGCGACAGGCGCCCTCCGGGGCCTGGGGACCGAGACGCCGTCCGAGCACCCTGCTCGGCTG---CCAGTCCCGGTCCCGGTCCGTCCGCACTGCCCGTGTCCCCCTCAGCACCCTCTCGCCGCCGTCCTCCTCTGCGCAGCGCGCCCCGGCGCCTCCGCCTCTCGGCC---GCACTGCTCTCATCCGGCTCCACTTCAGTGCGCGGGGGCGCGCAATGCCCGTTCT------CCCCCGCTGCCTTGCCCAGCCCATTCTCTGTGGTCGGGGACGCGCCGTCGGGGCCGGCGGGGCCGCGT s rn2.chr14 77933165 2316 + 107821284 ctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctgtctctcCAATCCTCCCCTCTCTCTTCCCCCCCTTGTG-TGTGTGTGtctctctctcggtct-----ctctgtctctctctg-------tctctcCCACCCCtgtgt--------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAACACGAACTTTCCCAAAAGACAGCTTTGGCAGTTCAGGCTAGAAAGG------GACTGCTCTGGCATCTGACTCAG-GAACAGGGGGTTGGGGAGGA----------CAGGACTGAT--------------------------------------GGGGCTGGGGACACAGGAGAGACACAGGCT---------AGGTAGTCACCGG--------------------------------------------------------------------------TAGTCAC-CGCAGGCATCCGGGTAAGATCCCTACA-ACCCACCCAACTGTAGTGAGCTGGGTCACAGGTGCTGAGGCAACT---------CTCCCAC----TCCAGGTCCTATTAATAACCTTCCTCCCAACATACCCTGGGGGCTGCCAGGAGGGGCTACAAGG--------------------GGCTACTAGCACTCAT-----GGGGTCCTGGCTTAG-------------ACATAAGAAGGCCCT--------CAAAAGTGT------------TTTATGCAGGGAACTGAGGGCTGA-------GAAAAGGTGG----GGCGGCACTGGGGAGCAGTCCTTGGGG-------GGTGTCTGGGCCCTCCTCTACTCTTCAACAG-------------GTTC----TCTTTGCTCT-GGGCCACAGTGACCTTGGCTTCACCTCAGAAGCAA-----TACCTGGGAACTGTCCAG-CTCACTCTGACCA----CCTAGCAACGAAGCAAAGAGAT---------CTGGCCACAAGTCTACTCCATCTATGGGGGGAAGATTTCTTGGGACAGGTCTCACCCCA----CCTGGCCAA-TTCAAGAGGC----AACCAGAAGAGCGTGCTGAATGCCAGAGCTACACAGAG-CTCCGAGTGCAGATGCCT---------------GGGGC--TG-------GAGT------------------GGGGTTGGACTGTGGGGACAA-------CCCCCCCCCCAATCTAAATTTGGAATCGGCTT-GAGGTCCTCCATTCTTTT-GCTTCACAGCCACCTGAAG-AAAAGAATTTGGAGTATATACTTTGCATATACCCAAACCCTTTAACCGTTTAAAGGAGACCCCTCTCTTCCTCATGAAAAAAAGGCAGTTAGAACTCCAGTTTTCAGAGCACTCT-------ATACTCTAGTGTGTGCCTGT-------GCAGGGCTCTCAGGG-GAAGATCTGGAGAGTTCTCTCA-CACCCTGGCTTAAGGACTGACCAATGCACCTAACACTTAGATTACAAAGGTTTATTTTAAAAAAAA-AGTTTGGTTTTGTTTGGCTGTCATTGTATTTGGCAAAC--------ACTCTCAGTAACCAGAGATTGCCTGTGCTATCTCTCCTCCCCCAGACAGATACCTTTT--TCAGGTCATAG-GAAGTCAGCCCTTGCTCACAGGGAAGACCGAGAGTTGGGGG------GGGGGGTCTCCTTTCT------------GGTGCAGTTGT----CTGAGCTCTAAAACCCTAACTAAGTTCACAGCCACACTCCACAGAAGCCTTCTTAGGAACTGGATC--------------TAGCCACAGCCCCTCGCTGAGATGGGAAGGCAAAGGG---TCTCCCTTTCTCCTCCCCACTCCCAGAGGCCCAGTTGTCTCTC-TCCCAGTTCCTG-CTGGCCACATTCCACACTGTACCCTGAAGTCCG------CCCTGGAACTCTGGAGAAGCCACACTG-----GTTGGTCCCCCTATCTA--CCCGAGTTCGGAGCTGTCCAGGAGGTCAGTGGGGCCAAGTCCAGGCAGCCAGAGGGTCACTGCCTGAAGCCCCTTCTCCTCCTACGGAAGAGGATGTGCTTGAAAGAGCGCCTGAAGTCCTGATTGAAGACAGTATAGATGACCGGGTTGAGCGAACTGTTGCAGTAGCCGATCCAGAAGAAAAACTTAAAGAGCGGTTCTGGCAGCTGGCAGGCCTCACGGCAGATGCCATACAGGCTGTAGCTGAAGAAGAAGGGGAACCAGCACAGTACGAACACGCCCATGACCACCGCCAACACGAAGGTGAAGCGTTTCTCGCGCGCCTGGGCCACCTTGCGGCGGCACACACTGCTGCGCGCCCGGCGCCGACGCGACAGGAAGAACTCGACGGAGCGCGAGCTGGCCCGCGACAGGCGCCCTCCGGGGCCTGGAGACCGAGACGCCGTCCGAGCACCCTGTTCGGCCG---CCAACCCAGGTCCCGGTCCGTCCGCACTGCCCGTGTCCCCCTCGGCACCCTCTCGCCGCCGTCCTCCTCTGCGCAGCGCTCCCCGGCGCCTCCGCCTCTCTGCC---GCGCTGCTCTCATCCGGCTCCACTTCAGTGCGCGGGGGCGCGCAATGCCCATTCT------CCCCCGCCGCCTTGCCCAACCCATTCTCTGTGGTCGGGGACGCGCCGTCGGGGCCGGCGGGGCCGCGT a score=75816.000000 s hg15.chr4_random 279728 921 + 1219494 ttgcaggactgttgtaaaggattagagaaaataaatatttgcaaagtgttcaacacagggttcaggaactgatagatgctAGTGGTACCCTTCTCATCCCCATCCTCATCCAGTTCTGTGGTTCTGGTTAAT-TCTTACAGGTTTTGATGTGAAGGACCATGCTCAGAAGCAGGAGACCGCTAACAGCCTGCCAGCCCCTCCTCAGATGCCCCTGCCGGAGATCCCTCAGCCCTGGCTGGTGAGTCAAGGT---CCCACCATCTCAGTGGTCATCG----CTGGAGGCCTGGGGGTACTTACGGGCTCCAGGGGCCTGTGATGGAAGCCCGGTGTGGAAGAATGGAGCCCTTATTTGTCTCGAGGCACTCC-TTTGAGTATATTTCTAGGGCTGAGAAGCTGTGAGTGATAGCTAGTTGGTAGACTCTAGGTGTAGCCTCCCCTTAGGAAGCTAGCATTTCTTTGCACTGCCTCACACCACCATAAATTACCTATAGCAGGAGCTACAGGGCCACAGACATCTTTTCTTACGTCAGATTAAGAAAAACAAAAATTAGGGGATTTAGCAGACAAAA--GTATCTGTAGACCTTGTGGACTTGACTCTCTTCTGAGTTAATTCTGAAGTTGAATACCTTATTGTGAAACTTTAATAGTCATTGTTAGACTTCTTCTGGGGTTAACTATCCATATTGT-TTCCAAGAGAGAAAAATATGTACATATTTCGGGAATGTATACTTTAGT----TTTATGCATTCAAATTCAAATTTGTTGTTTTTTTT-------TTTTTAATCTGGCGATTCCCTCATTTGCAAACTTTTATGTACCATTCAGCTTTTTCTATATTTGGCTGTTTTCTAACTTGTTTACTCGAGGAATTCAGAGTGTCATTCAAAGTTAGGGCAAA---ATCAGTAGCAATTCTCTTTCTGTGTTTGCTTT s mm3.chr5 34209931 789 + 149719773 TTGCGGGATTGCTGTAAAGGATCAGAGAGGATAAATATTTGCGCCATTCTC--CAGAGGGCTCAGGAAA-------GGCCACTCCTGGTCTCCTCCTC---------ACCCAGATCTGTGGTTTTGCTTAATTCCCTACAGGCTTTGAAGTGAAGGACCATGCTCAGAAGGCAGAGGCC---AACAACCTGCCGGCACCACCCCAGATGCCTCTGCCGGAGATCCCTCAGCCATGGCTGGTGAGTTGGCATCCACCCACTACC-----CCTCACTGCTAACCGGAGGTCT-GGGCTACTCACGTTCCTGTCAGACCTGTGATGGAAGGCAGGGGTGAAAG------GCTTCTCTCTG-CCTGACGTGCTCC-CTGGAGTGTGCTCCTAGGGTCCCGAAGCTGCTGAAAACAG---------------------------------AAGGAGCTCAAGTTTCTCTGTAGAGTC-------------------------CTGGAAATGCAGGTTCTTGGAAATCT-------------GTTAGGACAGGTGA-----CGGGGAGTCCGCGGTCAGAGTCTTGTCCAAGGAGTCTGAGGACTCTACTTGCTT-------------------------------GTG-ACCTCTGATATTCATTGCTG----TGTTCAAGGGTGGATTTTT----TTCTCTCTCAAGAGAGAAAGA-ATGTGCACATTACAGAAATGTACGTTTCAGTTGAGTTGATGTATTTCAAGTGGGCTCAGGGGTCTCTTTTTGCTGTCTTTTTCAACTGGAGATGC-CCCGAATGCCA--TTGCTAACCCCCTTCAGCTCTTCCTGTATCTTCATAGCGTGCAGCTTGCTCTACC-AGGAGAACTGGCTTTCACTCAGA-TGAGGGTAAAACCATCCCTCG-GCTACTCTTTCCTCATTTGCTTT s rn2.chr14 30561700 772 - 107821284 TTGCAGGACTGCTGTGAAGGATCAGAGGAGATAAATATTTGCGCCATTCTC--CAGAGGGTGCAGGAAC-------CGCTACTCCTGGCCTCCTCCTCCTCCTCCTCACCCAGATCTGTGGTTTTGCTTAAT-CCTTACAGGCTTTGAAGTGAAGGACCATGCACAGAAGGCAGAGACC---AACAACCTCCCGGCACCACCCCAGATGCCTCTGCCAGAGATCCCTCAGCCATGGCTGGTGAGTTGACACGCACCCGCCACCGGCACCGGCACCGACA-CTGGGGGCCT-GGGCTGCTCTTGTGCCTGTCAGGCCTGTGATAAAAGTCGGTGGGGAGAG------GCCTCTCTCTG-CCCGAGGTGCTCCTCAGGAACGTGTTCCTCGGGTCCTGAAGCTGCTAATAACAG---------------------------------AAGGAGCTCGTGCTTCTCTCTAGAATC-------------------------CTGGAAGCACAGGTTCTTGGAAATCT-------------GTTTAGACAGGTGA-----AGGGGAGTTGGCA--CAGAATCTTATCCAAGGAGCCTGAGGACTCCACCCACTT----------TCTG----------------TGTG-ACCTCTGACACCCACTGCTG----TGTTCCGGGGTGAATTTTT----TTTT-TCTCAAGAGAAAAA---CCGTGCACATTACAGAAACATACAATTCAGTTGAATCGATGTATTTCAAATAGGTTCAGCGGTCTCCTTTTGCTCTATTTTCAAACTGGAGATGCACTCGCATGCCA--TTGCTGTCTCTCTTCAGCTCTTCCTGTATCTTTCTATTCCGCATCTTGCTCAATC-AGGAGAACTGGCTTTCACTGAGA-CGAGCGTAAA--------------------------------CTC a score=62988.000000 s hg15.chr4_random 283709 1167 + 1219494 ACCTtcacagtaaccttgttatctctgtttcacagatgacattacgaggctctttgagattatgtgacaacgttggctcttttaccagttg------cagagctggggctaaagcccaCGATTTAAAACAAGAAAATCATTCATTTTCCTGTGGCGTAAGATGTGACCCTTTGGTGGATGTGAGCCATCTTGTTTGCCTTTTTCATCGTCTTTGAGGAATCTCAGAGTTTTGGCT-CATGTATAATCCCAGTGGCATCTTTGTTTTCAATTCGCTTTATGG----------------CTGGATTCCACTCTATCCTGTTTCCGCCCCTGGTGGGCTGCCTCGCCTTCCATCTGGATGCCTGCCTGCTGATGGAAAAGGGAGGGGAGATGACATGGCCCCACAGGGCTTTCATTCTTTGTCATGCATAAGTAAAAGGAGAGAAACTTTAAGAAAATATGTGAGACAATCTTCCCAGTGTTTACTCAAGCGCTGTGTGGAATGCAGACTTAACAGTGATCACAATGGAATGGGGTGTAATTTGGATAAAGACTTGCATTTTGCCAAGAAGAGTATGTACTTAGAATTCTTAGTGTTAGGATTGAAACCATTTTCGCAGCT-------------------------------TA---------------AACTATAAA---ATTTTATTATCCTCAGTTTCCT---TCAGCGGCA-AGGATTCCTTCCTGCAGATGAGCAGCAAGC-----GGCACAGGAAGTTTAGATGATGGCATGAATGCCGTAGGGTGCTGCTGAAATACATCAGTTAGAAAAGGGTTTCGCCAATATGTGATAGAAATGGAACTGGAGCCCTGATTTTCTTATTTCAAATTATATATTTTTTGGCTGTTACTC--CTAACAGATTTTAATCCCTCT---TACCAGAAAAACAGAATCTGGAGGTGTCACTGTGGATATAAAATTAAAGTCAGAAAGGGATTCCAAATCCTAGGTGTATGTATTTCTCAGCTAAGATCAGCTCTCGTCATTTATTGGTGTTTCCC-TGGAAAGGACTAAGCAACAGATGGGGCAGGG--GTAGGGAAGAAGGTGGGGAGCAGCAGACAGAGGGCGGAGTGCCAGCCAcgaggcgaggcgagcgaggcaggcgaggcaagCGGCAGTGGAAGGCATGAAGGTGCTGGGTCTGCCTTGGGCGCGGGGAGGAGAGTCTTCCTAAGAAATGATGCGTCTGCTTGTGCTGTGTGATATGG s mm3.chr5 34214967 1028 + 149719773 ATCCCCGTGGCACCCTTATTTTGTCTG----ACAGATGGGATTAGAGAACGCGTTGTTATGATGTGTTAGAGTTAGGCC--TTGGCAGTCA--GAGTCAGGCCTGGAGCTACTGATTCTGTGTGTGGACA-------CATAGATTCTCT-----------GTGTGACCTT-------------ACCATCCCCTACCTCTC-----TTGTCTTTCCAGCGTCTCAGCATGCCATCTCCATGTGG---TCTGGTGGCATCTTTCCTTTGCATTCAACCTGTGGAATTTTAGGCATGCACCTGGATCCCATGCC-TTCAGTCTCCTCTGCT---------------TTTCTACTCGGATG-CTACCTCCTAAT---------------------------------GGCTCTGCTTCTGCACTGT-CATAGGTTAAGGCTGAGAAAGCATAAGAAAATGCGTGCTGGGTCTTGCTGGGTAGTCAC----------TGTTGCATGCAGATCAGAGAGTG-----GGCGGACT--GGTGAACTCTGTCTAAGGACTGTC----TGTCAAGA-----------CTAGAATTCTTGGTGTTAGGATGCAatctatctatctatctatctatctatctatctatctatctatctatctatctactgatctaccaatctatcaatctattgatctatctTCAGTTTTATAGCCCATGGGAG-AAAATTCC----------TGGACTCTAATCCCCTTGGCCGGGGAAACTCAGACTTTGACATGTTTCTC----TGTGCTGCCAA---GCATCC-----------CTGCTGCTGGTGTGGGGCAGATCT--CCCCAGAACTCTGATTTTCTTATTTCAGATTGGATAATTGTTGTCTGTTATTCTATAAATACATTGATTTTTTTTTTTGAGCCAGGAAAGC--AATATGGATGCATCCCTGGATGTGTAGAATTGGAGTCAGAACGTG----------------------GTTTCTCAGCTATAGTCAGTTTGGGGGCTTCTCCAGTGTTTCTTATGCAAAGACTTCTGTGATGTGTGAGGTCATGTCATAGACAGGGGGATGGTGGG---------GGAGGGAGAGCTCCAGCTCTGAGAAGTGTT------------------------------TGGGTGTAATGGTGTTGTGTAAGATGGGGGTGGGGAGGTATGCCTCTCCTTAGGAAGCAGGAGGTCTGGATGTG----GTGATATGG s rn2.chr14 30566880 965 - 107821284 GTTCCCGGGACAGCCCTATTTCGTCTG----ACAGATGGGATTAGAGAATGCTTTGTGATGACGTATTAAAGGTGGGCA--ATGACAGTCATGGAGTCAGACTTGGAGCTACTGCTCC--TCTGTAGACA-------CA----------------------GGTGACCCC-------------GTGCTCCCCTTCATCTC-----TCGTCTTTCCGGAATCTCAGCATGACATCTCCATGTGG-------------TCTTTCGCTTGCATTCGCCCTGTGGAGTTTTAGGCATGCACCTGGATTGCACTCC-TGCAGTCTCCTCTGCT---------------TTTCCACTCGGGTG-CTGCCTCCTAAT---------------------------------GGCTCTGCCTCCTCAGTGT-GGAAGGTCAAGGCTGAGAGAGCCTAAGAAAATGCATGCTGGGTCTTGCTGGGTAGTCACT---------TGTTGCACGCAGATCAGAGAGTG-----GGTGGAAC--GGCGAACTCTGTCTCAAGACTGAC----TGCCAACA-----------CTGGATTTCTTGGTGTTAGGATGGAAAC-atctatctatctatctatctatctatctatctatctatctatctatct------------atccatctatctatctatctatctTCAGTTTTATAGCCCATGGGAGAAAAATCCC----------CAAGTTCTAATCCCCTTGGCCAGGGAATCTCAGACATTGACAGGTG-------------------------------------------TGCTGGTATGGGGTAGATAT--CACAAGAA--CCGATTTTCTTATTTCAGATTGTATAATTATTGTCTGCTACTC--TAAATAGATGGATTTTTCTGC---AGCCAGGAAAGC--AATGTGGATGCAACCCTGGATGTGTAGAATTGGAGCCAGAAAGTG----------------------GTTTCTCAGCTCCTGTCAGATTGGGGGCTTC-CTAGTGTCTCTTATGCAAAGACCTCTGTGATGTATGAGGTCGTGCCATAGGCCGGGCCACAGTGAG---------GGCGGCAGAGCTCCAGCTGTGGGGAGAG--------------------------------TGGGTGTAATGGTGTTGGGTAAGATAGGGGTGCAGAGGTATGCGCCTCCTTAGGAAGCTAGGGGTCTGGATGTGGTCTGTGATATGA a score=78906.000000 s hg15.chr4_random 287919 1231 + 1219494 TCCAGGACATGAATAGTTTGTTTGACCATGCTAAAAGGAATTTGGAATACCCTGCGTTTCAGGAATAAA-----AGATACTCAGTGAATCAAGCAGCTGTTTTCCAAAAGCAGCCAGCAGAGATTTTAACTTGGATGTGGACTCCTGTACAGACCTTGCCTGGTGCTGGGCCCCATGTATCAGGTTCT--GTTGCGTCTG------Taggaagatatgaaggacctggagatggtccag------cctaacggcacactaagatgaca----------------------gtttgggaagccagccttctga------------------------------------taggagtgcaaaggaattgaagttatttagcc-------tcgggaacaaggactgggggcgggagggaggtaactctctgtaagtccctgaaggaatattgtgcagaTGGTCTGGAGTGAGTTCTCTTCTTCATCTGGTGAGAGGAAGGAGTGGGTTGAATCTGCAGTGGGTGATTAGTCATTCACAAAGGACTTCTTGGCTTCAGAGATGAGTTACATAGAAAGCGATGGAGTCGTACTTTCT----GGAGAGTTTACATTAAAA-AAACGCAACAGCCCCATACTTTCAATAGAACCTTGTTCTACTTGGAACTGTAACTGAGTAGATTTCAATTTGGGGCCTCTGCTCTGTTCCATTCCTTGTGAACATACCTCTTCCCAGGTTGTTTACAGAATCTAGGTAGTGGGAAATTGTTGCATGCTATTCATAGGAAAAAGGGGAGAGAGAAAGAATATGAATATTAAAAAggtctttagcaggcagacgtggtgtttgaaaactccagc-tggcagttactagtgtctga-ttttgagcaga----tttagattctgagcttcaacttctgtatctgtaaaatataaggtaatagaatacatgccct--gaaggattcctgcatggattgattgacgttcatgtggcaagtgcagaagtgtctagcacagtgctgggcagattgcagatgct-gggcgaatgctggctttCCTGCCACTCAGCCACCTCTTTTGGCAGAAGGACCAGTGAGAGACA-CACCAGCA-AGTCCTGTAGATGGTCTTAGGAGGGAGATGCTGGGGTGGATTAGAGCCGTCAGGAACATTTAAGAAAAGAGGGGACTTGAGCACAGTCCTGAAGGCCAGGTGGGACGTAGGTTGTCCCGAGGCGCGGAGTGAGCCCCCAGCTCGTCCATATTCTAAGGCTATGGCTTCACAACCAGAGAGAGTTTCGGTCTCTGAGTTTGTTAAAAAATTGTGATGg s mm3.chr5 34217364 1091 + 149719773 TCCAAGGCGTGAGCAGTCAGTTTTCCGGCACTCAGAGGAAGGGGGAAT-CCCTGCTTTCTCA---TATACCTTCAAGCACTCAGTGAATCAAATGGC--TCCCCCTGAAGCAGCCTCC---GATTCCAGGCTGGATGTTTA-----------GTGTCACCCGGTGCCAAGCACAGCATATCAGGTCTCTTCTTAGGACAG-----------------GAGAG-CCTTG-GCTGAGCCAGCATGGGCCCTGGGGCAGCTTTAGAGGACATCCCCTCCAGTGAGTGCTGGCTGCCTACAAAGCTGGTCCTTTATCATGTAGGAGGATGGCGACCACCAGGGGACTAGGTACATGCATAGGAGGGAATGGAAGCTGGTTTCTG-------CAGGGAAC-AGGCCT--GGGCAGTTGGGTAATAGCATTCCGCTAG---CTGAA------------------CTGGGATTCAAGCCTC-TCCCCAGCT-GCAGGAGGAGGAAGCAGAGTGGGTGTGCAAT-GGCCCTTAGTCACTCACAAAGGACTTCTTGGACTCAGAGTT-------AGGGAAAATGACGGAGTCACA--TTCT----GGAGGATTTGCAGAAGGATAAACACAAAG--GCCATGATGTCAGTGGAGCAGTGTTC-----------------GGGCAGGATGGAGCTTGTCACTTCTACCCTGTCAC---------------------TTCCTGGTTATTTACAGAATCTAGATAGTGTGAATT-------CGCTATGCACAGA----GGGGGAGAGATCA-----------TTAAAGAAGGTCTTTAATAGA-TGCCGGGATGTCTGGAAACCCAACCATGGCAGGAACAA--GTCTGA-TTTTGAGCAGCGTGCTTTAGATTCTGGGCCTTGCTCTCTGCGCCTGTATGGTATGAGGC-----------TATCCATGCTAGCCTTCCCGCAGGG---------CTCCCATG---------------------ATACATTGCCAGGCAAGGAGCAGGGGCCCTGGTGCAT--CAGACCTCATTCCCTTCATCCTTTTCTAGTGGCAG-AGGACCAGCAAGGACAATCACCGGCAGGGTCCCACAGATG---TCAG--AGAAGAGGCTGGCATGGACT--AGTTGTCAGGAAAGTTCA--GTAAGAGGAGACCTGAGCTGCATCTTGCAGGCT-GGTAGGATCTGGTTTGGTCTGAGGCTAAG---GCACTGCTACC----------TCTAATG--GTTGCTGCACA------------------GCCTGTGTTTG-TAGGGAATTCTGATGG s rn2.chr14 30569173 1082 - 107821284 TTCAAGGTGTGAGCAGTCAGTTTCCCA-TGCTCCGAGGAAGGCAAGAT-TCCTGCTTTCCCG---TGCGTCTTTAAGCACT--GAGAATCAAGTGGC--TCCCCC--AAGCAGCCTTG---GATTCTAGGCTGAATGTTTA-----------GCTTCGCCCAGTGCCAAGCACAGCATGTCAGATCTC--CTTAGGACAGTCCTCTGAAGAGGACA-GAAAGACCTCG-GTTGAGCCAGCACTGACCCTGGGACACCTCTGGAGTACATCCCCTCCAGCGAGTGCTGGCTGCCTGCAAAGGTGGCCCCTTAACACGTAGGTTGATGGCGGCC--CTAGGAACAAGG--CAGTGATAGGAGGGG-TGGAAGCTGTTTTTTTTTTTTTTCTGGGGAC--GGCCT--GGGCGGTTAGGTAATAGCA------------CTGAC------------------CTAGGAATCAAGCCTC-TCTCTGGCT-GCAGGAGGAAGAAGCAGGGTGGGTGTGCAGT-GGCCATTAGTCAC----AGAGGACGTTTTGGACTCAG-------------GGAAAATGATGGAGTCGAA--TTCTTGGGGGGGGGGTTGCATAAGAATAAAAACAAAG--CCCATGATGTCAGTGGAGCAGTGTTT-----------------GGGCGGCCTGGAGCTTGTCACTTCTACCCTAACAC---------------------TTCCTGGTTATTTACAGAACATAGATAGCGTGAATT-------AGCTATGCTCAGAGAAGGGGGGTGGGGACA-----------TTTAAAAAGGTCTTTAGTAGA-GGCCAGGATGTCTGAAAACCCAACCATGGCAGGAACAA--GGCTGATTTTTGAGCAGGGTGCTTTAGATTCTGGACCTTGCTCTCTGCTTCTGTATAGTGTGAGGC-----------TACCCC--ATAGCCTCCCTGCAGGG---------CTCCCATG---------------------GTGCATTGCCAGGCAGAGA----------TGGTGCCT--CAGACCTCATTCCCTTTGTCCTTTTCTAGTGGCAGAAGGACCAGCAAGGGCAATGACCAGCAGGGTTCCACAGATG---TCAG--AGAAGAGGCTGGCATGAGTT--AGTTGTCAGGAAAGTCTA-GGGAAAAGGGGGTCTGAGCTGCATCTTGCAGGCT-CGTAGCATCTGGTTTGGGCTGAGGCTAAG---GGACTCCTACC----------TCTAACG--GGTGTTGCACA------------------CTTTGAGTTTG-TAGGGAATTCTGATGG a score=70068.000000 s hg15.chr4_random 289738 1009 + 1219494 GAGTG---TGTGGGGATGAAGGGGAGTGC--AGACACTGTCTC----------AGACCCCTGGGGCAGCATCTGAACAGGCCCAGTCCTGCGTGGGGGAAGGGGCATTCTGTGTCGTGGATGCTCCAGTGAGACTGCTGCACACACCGAACCTGGAGATTTGGTGTGAACTGG--ACGGCATGTGGCCAGGGCTGGGGCAAGAATGTGC------------GCAGGAAAGTAAGA--------GAGACAC--ATCAGGGCTGG------CCTTCCAAGCCTCTTCGTAGGATGAGGTTCTCTTTTGCCGAAGACTTTACA-----AAGGAAAGAGGAAAAGACTGGCCACACCTGTTAATTGGAAATCCAGAATTTCCTTCTAATGGTCATGCTAATTTCTGTGTCACTTTTCCTTTCTTCCTCAGCCTCCTGACAGTGGGCCTCCACCATTGCCAACATCCTCCCTCCCAGAAGGTTATTATGAGGAAGCTGTGCCGCTGAGCCCCGGAAAAGCTCCGGAATACATCACATCAAGTGAGTGGCCAGCCCTGCC--CAGCCATGCTGCCTTTGTGATTGGCAGGACTGTTGCAGAGCCTGTCCCCT---TTCTGGGTAGGAAGGGCAACAGGGTATTATAAAACACTGTGGGCCAAGTACTTTTTGAACCCAAAGAGATTG-TCAGTACAGGAAAGGTTTTGAGAAGGACACCGAGTGCCTCACACACAAGCCTCTCTTCCGATTGCT--------GTCTT--------CCTTGTGACTCAGAGGTAGTGAAAGCTTATTGCTGTGGCAACAGGTATCAGCAGTGCGGAAGAGAAATGGCTCTTTGTGGTATATTTTTTGGGTGCGTGCTACAGCCCCCACTTCCTTAGTCTTTGATGCTCTTGGGCTGCACCCATTCTGCCACGATTAAAGCAGTTTCCACCAGGTTGGCTGTTGGGCCAGAA--ATAATTGGGTACAGCACAAACAGGCGTCTCTGTCATAGACTTTTGGTTTTTTCTTT---TTTGGGGGTACAGGTTCTATTAGATGATTTTTGCCTAAGTTCTGGTTCTCCTGGCCCCAGT s mm3.chr5 34218962 884 + 149719773 GGGGTCACTATGAGGATGAAGAGGAACACATAGACCCTGTCTCTGCTGGAGATGGGGCTCAGGAGG-AGATGCAAGTCAGCCCAGATGGACTGGGGGGGAGAGGTTTCTAATG-------------------------GCTCAGA-----------------GTGTGAGCCAA--ATAGT---------------AGGTGAGA---TGC--------CCATGTGTGAAGGTGCGACTCCCTAACAGGTACCAGTAGGAGCTGAGTGATCTATGACCAGCC-------AGGGTGAG----------GCTGAGGGATGGACATGAGCAGAGAACGTGGTCCAGGT--------CCTGGTGACTTTGAGTC-----------TCTAGCAGCCACTCTAA--TCTAGCACGGTTTTCCTTTCGCCTTCAGCCTCCTGACAGCGGGCCTCCGCCTTTACCAACGTCCTCTCTCCCAGAGGGTTACTATGAGGAAGCCGTGCCGCTGAGCCCTGGGAAAGCTCCAGAGTACATCACCTCAAGTGAGTGGCAG---CTGCCCACA-TCAGGGTGGTTCCTTCATTCTCAGGAATGGTGGTGAGCCAAGGCACT-GGTGTGGAGGAGGCAGGGCTAAACATCACCACAGA--AATGTAGGAGCAATGTGTCTGGGATCTAAGGAAGGCATTTAATACAGGAGGGGTCTGGGGAAAGGCTGAGA------CCCCCAGAGTCCTTTCTTCCAGCTTCTGTTGAGTCGGGTTCAGAGGTACCTGGAGCCACAGAGCCAGGTGTGGGTAAATGATGTGAT------TCTCTGAGGT-CGGGAGAGAAACTGTTC--TGTAGTTCATT-----GGTGCACGCTCTACCCTGTCCCCTCCTGGCCTCTA--------------------------------CAGAGCACAGTCCTGCAGGTTGAGGTTTCTGCAGAAATGCCTGTTGGGTGCA-------------------------------GGCTTCTCTTCT---GTGAAGAGGGCAGGCTTCACTGAACAGTTTCTGCTGAAGTCATGATCCACCAGCTCCCGGT s rn2.chr14 30570409 873 - 107821284 GGGGACACTATGAGGATGAAGAGGGACACCCAGGCCATGTCTCTGCTGGAGA-GGGGCTCAGAGGGTAGGTTCGAGTCAGCCCAGATGGATTTGGGGGGC-AGACTTCTGATG-------------------------GCTCACA-----------------GTGTACACCAATACTAGTC--------------AGGTAAGA---TGCTCCCCTCCCCCCACACGAAGGTGGGACTCCCTA-CAGGTACCAGTGGGAGCTGAGTGGTCTCTGACCAGCC-------AGGGTGAG----------GCTGGGGGATGGACATGAGCAGGAAAAGTGGTGCAGGT--------CCTGGTGACCTTGAATC-----------TCCAGTAGCCACTCTAA--TCCAGCACCGTTTTCCTTGTGCCTTCAGCCTCCTGACAGTGGGCCTCCGCCGTTACCGACATCCTCTCTCCCAGAGGGTTACTATGAGGAAGCTGTGCCCCTGAGTCCTGGAAAAGCTCCAGAGTACATCACCTCAAGTGAGTGGCAG---CTGCC--CA-TCAGGGTGGTCCCTTCATTCCTGGGAACGGTGGTGAGCCAAGGCACTGGGTGTGGTGGACGCAGGACTGAACATCACCACAGA--AATGTAGGAGCAATGTATCTGGGACCTAAGGAAGCCAATGAATACAGGAGGGGCCTGGGGAAAGGCTAAGA------CCTTCAGAGTCCTTCCTTCCAGCTTCT--------GGTCTCAGAGGTGCCCGGAGCCACAGAGCCAAG---------ATGGGGTGGT------TCCCTGAAGT-CGGGAGAGAAAAGGTTC--TGTAATACACT-----CATGTATGCTCCTCCCTGTTCTCTCTTGGTCTCTA--------------------------------CGGGGCACAGCCCTGTATGTTGAGGTTTCTGTCAGAATGCCTGTTGGGTGCA-------------------------------GGCTTCTCTTTTGTGGTGAAGAGGGCAGGCTTTACC-----ATTTCTGCTGAAGTCATGATCCTCTGGCTCCCGAT a score=3181.000000 s hg15.chr4_random 299613 518 + 1219494 AGTGCTTTCGCTCATCGCGTTTCTCCTTCTCAGACTTTTTCCTTTGGTTGGCAATAGCTTGTCTCAAGGCCTGG-------------CTCTAAAG---TGACATCTTCTGTGCTGTCTTCCCTGTGCCCCTGCAT----------------ATGCTGCCCCCTCGTGCCCGGCTCCA-TGACAGCTTGCATTTTGCCCTAGATTGTAAAGATCTTGCCCCCCCACCCCTGTGCCGTCCAGCAGAGCTTTGGCAGCAGGGGGAGTGTTTTTCCTCTGGGCCCCGGTATCCAGTTGACATGTGGGACTTGA-------ATGAAAATTGAAATGTAAGTAACCCCCTGTGGCTGCCCTGTGAAGCAGGGGGTGCTGGGTGAGTGTAGGTGCT--GATGGGTGTGTG-GGGTGTGTTGGAGGGGGATGTGGAGCCAGTGAGAACGACCCACCTGTGGGCGGAGGGTGATGTGAAGCAGGGGCAGAAGCGGGGCAGAGACCTGTGACCCAGACCAGGGTGTTCTGTTCGCCTCTCACCTTTGAG---TCAGCCCCTCA---TTGCATCCCTC s mm3.chr5 34220382 478 + 149719773 AGTGCATTGGCTTATAGCACTT----TTCTTAGACCTGTGGCG--GGCTGCCAGCATCTTCTCCAGGGGCCAGGTGACAATCTCCTTCTCCCAGGGTCTGGCATTTCTGGCTCTTAGGTCCCTGTTTGACAGCATGAGCCTCTCTGATGGTATGCTCCCCCCATCTGCCC--CTCCAGTCAGAGCCTGCCTTCTGTCTTTG----------CCTTGCTG---------TATGGTATCCA-CACAGCCATAG------------------GCTTTGGGGCCCTGGAACC--------ATGTGTGACTTAATTCCTTCATGAAAATGAAGGTTGAAAAGTTCCTTTGAGGCTGCCATGTAAAG-AGGGGGTGTTAGGCAGATGCAGACACTGGGATAGCCACGTGCTGGTGTGTAGGAGGGGAGAG----------GAGAAAGA-----------GAGGCTGCTGATCTGAAG--ATGGCAGGAGCCTGGCC--------TGACTGA---CAAGTTATTCTACTGCAACCTCCTGTCTGCATCCTCAGCACTTCAGACTGGCAGCTCTC a score=7098.000000 s hg15.chr4_random 300131 66 + 1219494 GTGGCCTCTG--------------AGCTGCTCCTGTCTCTTACCTCGTCCCTTCTTCAGCCCATTCCTA---GTGCCATTGCC s mm3.chr5 34220860 82 + 149719773 ACACTCTCAGGTTACCACTGCCTCAAGTGCT-CTGTCTGTTACTTCTCTTCCCAGCCACCCCAGGCCTGAATGTGCCATTGTC s rn2.chr14 30571595 82 - 107821284 ACACTCTCAGGTGACCACTCCCTCAGGTGCT-GTGTCTGTTACCTCTGCTCCCAGCCGCCCCAGTCCCGAATGTGCCACTGTC a score=237653.000000 s hg15.chr4_random 301034 2949 + 1219494 gcacttgccctgtgccaggta------ctttgttaggtgccgg----ggagatcaccgc---caacgagatggtctccttttcttcagggggcttacagcctgcagtgggggccagtgttgaggtgtgc-tgcgatccgctctgtgttgggccgtgtggaggctcagaggaagggcatttgacctagtg---tattagtctgctcatgccgcagtgacaaatgccacc--actggggggcttccacagcagaagctc---gtcagtccgggagtccagg--ttagactgccagc----------acggttgg---gttctggcgaggcctcttcctggcttttagatggctaagtcctcactgtg--------tcctcacatggtggggacagagctctctctctc---tctctctcttcttaaaagaccaccagacctatgggattaggaccccacccttaggac-----------------ctcatttaactttagtaacctcctaaaagtcctatctctacatatagtcatatggttagagcttcaacacttgaatttccgggagggacacag------ttcagtccatagcacccagctttggtgattcagggagggtttgctggaggtgtcaggaagttaaaccccaaaagatgagagcatttaccaggcaa--aggcaggagggcgagtggatggacaggaagctt-gttagagggcgtggcacatgcagaga-ccctgaggtggcagaggggtgatgtgtttgggaaactgtcagtcacagcagtatac-----atgccagtgtgtcacagagtgagGTGGGCACCATTAGAAGGACAGGTGTACATTTCTGTCAAAGTTCCAAGGATGCCCCAGAAGGGAGAGGTGGCCCTTGGTTGCATATTGAGTGTCAGAGATGTTGTGCACGTGGGGATGCCAGCAGGGAGAAGCAGATTGCAGCCT----TGGGAGGT-CTTTGACATAAAGGTGCGGACGTGGGAGGGCAAGGGAC-CTCCATGGGCAAGAGTTCTGTATGGCGGAACACTCTGCAGAATGAGGATGGCGCTCGTCCTGCAAGAATGTGGCGAGGAGTCAGTGTCGGGTCAGCGTGGGGTCCCGTCCATATGAAACAGTCTAGAAACAGTTTTTATAAACACA--------GAATTTGTAGGCACTTCACCT------TGTCATTGAGTTTCCACTGCCCAAGTCTTAGCATTGTTtttttatttttgtttttgtttttgtttttTCCCTTAAG---GAGCAGAGGTCCCTTTCTCATTCAGTTACTTGGTGATTAAAAATAAGAGGACGTGCTCTTGAGCCCACGGGTAAACTTCAAGGTAAAGAAGTCCTTTTTACCAGTGTATGTTTATTTTTTACAGATTATGATTCCGATGCGATGAGCAGCTCTTATGAGTCGTATGATGAAGAGGAGGAGGATGGGAAGGGGAAGAAAACCCGGCACCAGTGGCCCTCCGAGGAGGCCTCCATGGACCTGGTCAAGGACGCCAAAATCTGCGCCTTCCTGCTGCGGAAGAAGCGGTTCGGCCAGTGGACCAAGTTGCTCTGCGTCATCAAAGACACCAAACTGCTGGTAAGACATTTGGAATCGCT-TGCATTTTTTGTAAGATTGCTGCACTCAGAAGCCATGGCGTTTATATCCAGTCACCATTAACATCAGCTGTGCAGGAAGGGCAGCACTCAGGTGTCAGCCAGGTGCCC----------TGAGCTAGCCGCAGTACCATGCCAGGGGCCCCCACATGCCATCAGGGAGCACTCGCCCGTGTTGTGTGTTCAAGGTTGCCGGTTTCCCAGCTCCAAAAGCAGCCAGCGAACAAAATCATTCCCATTCCCGGGCAGGGCCTGTGGTTTGCGTCTGTGGAAATGCACAAGATTTTAACTTGCCAGGAGTTGCAAGATGGATTTTCTCATTTGTAGTGAGTCAGTGGATTCCTCAAAGCCAGCTCATAGAAGTGGGACGG-------GGAGCAGCC--------------AGGAAAGGAAATTCTTCTGGAAAGCTTGGGGCCAATTCCCa-----------------tttttttttttttttttaaatttGAGAGGCAGAGCAGGAAGACA-AGTAAGGAACAGAGAAGCAGGGAAGGCGAGAACCTGGAC-CTTGCTGTGGG-ATTATTCCAGTGGAGACCCCAGCAGGAAGGCTGCATTCCGGGAGGACGGTGTGGCGtcccttcctcctccccactccctccccaccttccttcttttcctcctgccttttttTTAGAAACCATGGTTGGTTATTAGAATTATGAACTTTAAAGTATG-TTTTTGCCTTTTGTTCTTCCTTCAGATTAACCTTGGGGGAATCATTGCTCAAAATTATATCATTAATTAGAAAACAAGAATTTATGTTTCT--------------GTAGAG-------CACT-------------------CTAGTGGAGCA-GATAATCCtttttttat-----------------------cttttttttttttttttttttGTAAATCCAGGTTTCATCTTTGAATTGTGGGAATCTTTTTTTGTTTTACTAAGTTCCTAGGATATTATATATTTTTTAATGTTTTTGTTCAGTTTTTTAAAACAGAGTACATATTTTTTCCACAAATGTGGCCTGAATTTCTCCCAGATTTAGAATGTGCCAAAAATGATGCCATGGGGAATATTAAAAAATGAAAAAAAGAAGATTAATGTGGTCCTTATTTCCAGTCTGATATAATGGCTACAAGATGTGGATATATTATATG-AATGTTTTAGAAATACATAATCAACTTTCATTTAAAAGAGAAGCTTCCAAATCCAGTGAGGGAAGCTTCGCGGTTGTGTGTAGGGATTAGCAGTTTGGGGTTCTGAGTCCCTGGtccctctcccct--gccctcctctccctcaccccctaacttcttaacttcttc-------ccccctcccctGCTTTGTCTTCCATTTGGGCCCCTGCCAGCtttcccccttcaaaaccaggatgataatacctactactaagagtagttgtgaataagaagaaattagtggaaaagcaggtgaaagcactGTTT--GGTCAAATGCAGAATCAAAGTTATTGACTTTTATT s mm3.chr5 34220968 2722 + 149719773 GCACTGGCCATGTTCCTGCAATAGGAGCTTTGCTAGGTGCTGGCTGGGAGAGCTACCACATACAACAGGATG------CTCTCTTCCCAGGGTTCCCAGCTTGGCGTAA-----AGAGCTGACCTGTGCACACAGTGAGGAGTCTGTTGGAGTGTGTACA-GTGTGTCACAAGGGCCTATGACACAGTGTGCTGTTGGCCTGCTCAGGCTGCTGCCTCAAATCACTCTCAGCTCAGAGGCTGGAAT-GCTGAAATTCTTGGGCCATGCTAGAG--------TTATCGTACCAGTGCTTTATCTTACAGATGGCCTGTCTTAGAGGTGTGCCTTC------------TGGACATGTCCTCACCCCC---TCCCTTCTTCCCCC------------CTCTTTCCTCTTGTCCCTTTCTCT-----------CACCACTCCCATTGGATTAGGACTCTAC-CTTATGGT------CGTATTGGTAACAGATTTCATCTGAATCGTAATCCAAAAGCTCCATC---AGATGCAGTCATGT-----TAGCCTAAAGACCTCACTCAGCATGAGAGTCTCAGGGAATCTTGAGCCCATGGTAC-------TGGC-----------------CAGAGGGAGCCATAG-CTTAATGCT----AGACATGAACACACATTATCCCAGGAGAGAGGAGGGAGATGGGG--------CAGCTC-G-----------GGTGTGTACAGAGAGCCCAGAGGAAGAGGGAGCAGGCTATGTGTGGAGAAA--------------GTGTAA-----GAACTGGGGTGTCCTTGAGTGAGATTTGTTCTGTTAGAGAGATGGG---ACCAGTCCTGCCCAGATCCAAGG-CAAGCCAGTGGGAAGAGGTGGCCTCTGG-TGGATCCCAAGTGTACTGAAGGGTCTGTGGGTGGTAGTGTCAACAAGAAGA-------------CTGGGGTGGGGGTGGATTTAAT--CAAGGC-CAGATAAAGAGGAGCAGAGGACTCTTCACGGACATGGTTCCCGAGTGAC--CACCCAAGGCAGGGCACAGTTAATGCT------------------------GCCATTGGGGTGACATC-----ATCCTGTTGATGTGAACGAATCTAGAGA-----TTTAAAAAAAAATGAATCTCAATGTTTTAGTCGTTGCATTTGAAGCATTTTGATGTGTTCTCAGTGCCTGA----------------------------CTTGTGCAAGTTTTATCCCCAGTGCCAGGGCGGAAG-CCCTTTCTCACTGAAGCCTACGGTGGCTGGAAATAAGGCCAGGTG-------------AGGTGAGCTGGAGGGTCGG------CCTCTCACCTCTACCCTTTTCTCCTCCACAGATTATGACTCTGATGCCATGAGCAGTTCCTATGAGTCATATGATGAAGAGGAAGAGGACGGGAAGGGGAAGAAAACTCGGCATCAGTGGCCGTCAGAGGAGGCCTCTATGGACCTGGTGAAAGACGCCAAGATCTGTGCCTTCCTGCTGCGCAAGAAACGCTTTGGCCAGTGGACCAAGCTGCTCTGCGTCATCAAAGACACCAAGCTGCTGGTGAGGAGCCCAGTGGGGCTGTGCCGCCATTGGCAGTCCGAAGTAC---AGGACCACAACTGGTACATGCAGACGCTACCA------------CAGGGGAGG-------CAAGCGACGgc-------cc------------agcccagctcag--cccagccc-G----CTGGCACCTCTTCAGGGAGGGCTCA------------------------TGGTTCCCCCACACCCAAGTC------------------CTTCCACCCC---GCGGGGCCTGTGGCTTGTGTCAGTGGAAATGAGCAGTGTTGAGACTTGCCAGAAACTGCAAGATAGACTTTCTCATTTGTAGCGAGTCAGTAAATTCCTCCCAGCCAGGTCACAGCAG-AGGCCGGAGCCTGTGGAGGCGCCTAGGGGAGGGCAGAGGGAAAGGACATTCTTTTGGAAAGTCAAAAGC---TTTCCAAAAAGAAGGGTGGGTTTttttgttttgttttgttttgttttgGAGGCAAAACAGGAAGGTGGAGTA---CATCCAGAAGCAGGGCGTAGAAGATTCAGGACTCTGGCTACAGGTGCTGTCCCCTTGGGGGTTCCAAGGAGAGG-----AGCCTTGGAG------GCGGCATTCCTGC-----CCCCAGTCC--CCCCAGCTCCCAAGGCCACTTCCGG---------TAAAAACCAAGGCTGGTCACT-GGGTCAGGAGTTTTACTGTCTGCTTTTTGCCTTTTG----TCTTTCAAATTAACCTC-AGGAAGCAATTGCTCAAAAGTGAGTCCTTAA----AGGAG-AAAATCTGGGTTTCTCCTTTCCCCACGTGATGGAGCAGATAACACTGTAAGAGAGACCATGGCCCCCAGTGAATTATGGGAGTCTTGCTCGCATTGGCTCTTAGATCACTGGATGTGcttcttcttcttcttcttcttctctcttccttcttcttcttcttcttct-----tcttctctcttcttcttcttcttct-----------tctttttt----tttttgttcAGCCTTTTTAAACGAAGTGCATATTTTTTCCACATGTGTGGCCTGAATTTCTTCCAAATATAGAATATGCCAAAAATGATGCCATTGGGGATTTTAAAGCATGAAA-----AATATTAACATAGCCCTTCTTTATAATCTGATGCAATCGCTGCAAGATGGTGATATGCTATATGCAGTGATTTAAA---ATGTACTCCACACTCATGAGAAAGAGCCG-TTTTATTTCCAGTGCAGACAGCGGGAGGGCTG-ATGCAGAG-TCAGCAGTTTGGGGCCCAG-GTTCCTGGCCCCACACCCGTTGGTCCTCTTCCTCCT----CTCTTGCTTTT----CTCTGCAGTGAGAGCCCTCTCCCTGCTCTATGAT--GGTGAGAGCTTTCATAGCTTTC-------------------ATAGAGCCTACCTTTA-----AATTGTT-----GAAGGAATAAATGGAAAATGA-GGGAAAACATCATGTAAGACAAAATGCAAGGTGAAACTTG--GCCTTTTATT s rn2.chr14 30571741 2594 - 107821284 GCATTAGCCATGTTCCTGCAA------CTTTGTTAGGTGCTGG----GAGAGCTATCATATGCAACAGGATG------TGCCCTTCCCTGGGCTCCCAGCTTGGCGTGA-----AGAGCTGACCTGTGTGCATAGCGAGGAGTCTGTTAGGCTGTGTGCA-GCACATCAGAAGG-CCTTTGACACAGTGTGCTGCTAGCCGGTTCAGGCTGCTGCCACA---CCTACTCAGCCCTGAGGCTGGAAT-GCCGAAGTTCTTGGGAAATGCTGGAGGTTGGGACTTATCTTGCCAGCCATTTAGCTTACTGGTGGCCTGCCTTAGAGGTGTGCCCTC------------TGGCCATGTCTTCGCCCCCCTCTCCCTTCTTCAC-----------------GTTCCTCTT---CCTCCCTCT-----------TACCACACCCAGTGGATTAGGACTCTGCACTTATGGTGGTGACCATATTGGTAACAGA---AATCTGAATCGTAACCCAAAGGGGCCATCTCCAGATGCAGTCGTGT-----TAGCCTGAAGACCTCA----GGACATGAGTACCAGGGAATCTTGAGCCCATGGTAC-------AGGC-----------------CAGAGGGAGTCATAAACTTAATGCT----AGACATGAGCATACATTACCCCAGCAGACAGGAAGGAGATGGGG-------GCAGCTCCG-----------GGTACGTGTAGAGAGCCCAGGGGAAGAGAGAGCAGGCTATTTGTGGAGAAC--------------GTGTAACTCGAGAGCTGACGTGTCCTTGAGTGTGATTCCTTCTGTTAGAGAGGAGGG---ACAAATGCTGCCCAGATCCGAGG-TGAGACAGTGGGAAGAG-TGACCTCTGA-TGTATTCCAAGTGTTCTAAAGGGTTTGTGAAGGGTAGTGTCAGCAGGAAGA-------------CT----TAGGGGTT-ATTTAAC--CAAGGC-CAGAGAAAGAGGAGCAGAGGACTCTGCACGGATAAGGTTCAC----------ACCCAAGGCAGAGCCAAGCTAATGCT------------------------GCCATCGGGGTGACATC-----ATCCTGTTGATGTGAAAGAGTCTAGAGG-----TTTAAAAAAAAA---ATCTCAATGTTTCAGTCGTTGCATTCGAAGCATTTGGATGAGTTCTCAGTGCCTGA----------------------------CTGGTGGAGGTTTCATCCTCAGGGCCAGGGCAGAAG-CCCTTTCCCACTGAGGCCCATGGTGGCTGGAAATGAGGCCAGGCG-------------AGGTGGGCTGGAAGGTCAG------CCTCTCACCTCCGCCCTTTTCTCCTTGACAGATTATGACTCTGAGGCCATGAGCAGTTCCTATGAGTCATATGATGAAGAGGAAGAGGATGGGAAGGGGAAGAAAACGCGGCATCAGTGGCCATCAGAGGAGGCCTCTATGGACCTGGTGAAAGATGCCAAGATCTGCGCCTTCCTGTTGCGTAAGAAACGCTTCGGCCAGTGGACCAAGCTGCTCTGCGTCATCAAAGACACCAAGCTGCTGGTGAGGAGCCCGGCGGGGCCGAG-CACCATTGGCGGTCTGATGTAC---AGGACC---------GCATGCAGATGCTACCA------------CAGGGGAGG-------CAAGCGACGACAGGATCTCCTCGAGAGTCAGGGGCCCTGCCCAG--CCCAGCCAGG----CTGGCACCTCTTCAGGGAGGGCTCA------------------------TGGTTCCCCCACACCCAAGTC------------------CTTCCACCCT---GTTGAGCCTGTGGCTTGTGTCAGTGGAAATGAGCAGTGTTGAGACTTGCCAGAAACTGCAAGATAGACTTTCTCATTTGTAGTGAGTCAGTAAATTCCTCCGAGCCAGGTCACAGCAG-AGGCCGGAGCCTGTGGAGGCGCCTAGGGGAGGGCAGGGAGAAAGGGCATTCTTTTGGAAAGTCAAAAGC---TTTCCAAGAGAGAAGGT---------------------TTTTTTTTTTGAGGCAGAACAGGA------AGTA---CATACAGAAGCAGGGTGTAAAAGATTCTGAACTCTGGCCACAGGTGCTGTCCCCTTGGGGGCTCCAGGGAGAAG-----AGCCTGGGAG------GCTGCATTCCTGC-----CCCCA-------CCCAG----CAAGCTTGCTTCCTG---------TAGAAACCAAAGCTGGTCACT-GGGTCTAGAGCTTTACTGTTTGTCTTTTGCCTTTTG----TCTTTCAAATTAACCTC-AGGAAACAATTGCTCAAAAGTGAGTCATTAA----AACAGAAAAATCTGAGTTTCT-CTTTCCCCATGTGGTAGAG-------CACTGTAAGAGAGGCCATGTCACCCAGTGAATTATGGGTGTCTTACTTGTGTAGGCTCTTAGGTCATCGTATGTGCttttttttttcttttttcttttct-ttcct-------------------------------------------------------------tttttt----ttttttCTCAGCCTTTTTAAACGAAGTGCATATTTTTTCCACATGTGTGGCCTGAATTTCTTCCAAATATAGAATATGCCAAAAATGATGCCATCGGGGATTTTAAAGCATGAAA-----AATATTAGCATAGCCCTTATTTATAATCTGATGCAATAGCTGCAAGATGGTGATGTGCTATGTACTGTGATTCAAA---ATGCACGCCACTCTC-TGAGAAGGAGCCG-TTTTGTTT---------------------CTG-ATGCAGAC-TCAGCAGTTTGGGGCCCAG-GTTCCTGGTCCCACACCCGTTGGTCCTCTTCCCCCT----CCCTGCTTTTT----TTCTACACTGGGATCACTCTCCCTGCTCTATGAT--GGTA---------ATAGCTTCC-------------------ATAGAGACTAGCCT-------AATTGTT-----GTAGGAATAAATAGAAAGCGAGGGGAAAACACTATGCAAGACAAAGTGCAAGGCGAAATTTA--GCCTTTTGTT a score=6314.000000 s hg15.chr4_random 306185 77 + 1219494 ATTATTCCATTTTCTCTCATTAGGGCTGTGGAGTTGCAACAAATCTAATAGtatattt----tatatattattcacataaa------------------- s mm3.chr5 34224598 80 + 149719773 ATTACCTAGTCTGCCCACAGTAGCTCTATGCAGTTGCAACAGATCTAGTAACCCTTTCATG-TATGTTATATTCACATGAA------------------- s rn2.chr14 30575155 95 - 107821284 ATTACCCTGTCTGCCCACAGTAGGCCTATGCAGTTGTAACAGA-----TAATTCCTTCACGTTATGCCACATTCCCATGAACATACATGTAATTTTGTGA a score=61270.000000 s hg15.chr4_random 306898 450 + 1219494 GCCTTGCCCGCACTCAGGTTTTCATGATGCTAGAGCTTCCTCAGTGTTTCTGTTCGAACTCCCTTATAATATCAGTTGATTTGTTGTGTTGAATGCAGTGCTATAAAAGTTCCAAGGACCAGCAGCCTCAGATGGAACTGCCACTCCAAGGCTGTAACATTACGTACATCCCGAAAGACAGCAAAAAGAAGAAGCACGAGCTGAAGATTACTCAGCAGGGCACGGACCCGCTTGTTCTCGCCGTCCAGAGCAAGGAACAGGCCGAGCAGTGGCTGAAGGTAGGTTGTCTGCTGTGTTTCACAGCCATTTCAGTTCCACATGCCTTTCTGAGATCC----attttaattttaattttaattttaattttGTTCAAGCATAGGCAAGATGGATTCACCCA---AAGAGTTTT----GTCTTTAATA-----GCTAAATATT---------CTGATGACATGGA-----GGTT--------AATCAGAAAC s mm3.chr5 34224852 442 + 149719773 GCCTGGCTAGCACTAGAGGTTTGGTTATGCT-GGGTTTCATCATTGTTTCTGGTCGCACTTCCTCAAGGCATTAATTGGTCTGTTGTGTTCCCCGCAGTGCTATAAAAGTTCCAAGGACCAGCAGCCTCAGATGGAGCTGCCGCTGCAGGGCTGCAGTATCACATACATCCCGAGAGACAGCAAGAAGAAGAAACACGAGCTGAAAATCACCCAGCAAGGCACAGACCCTCTGGTTCTAGCTGTTCAGAGCAAGGAACAGGCTGAGCAGTGGTTGAAGGTAGGACATCTG--------------------------ACATGAC--TCTGAGACAC----ACTTCCAGACTCATTTAATTGATAAGTTGTCTAAAAC-----CCAGACAGATCAATGAATCTAGGAGTTTTATCTTTTTTTAATAATTGAGTTACATGTTAATTTTGCCCTGCCCCCATACACACATGCAT--------ACACAGACAt s rn2.chr14 30575426 444 - 107821284 GCCTGGCTGGCAGGAGGGGTTCGGTTATGCT-GGGTTTCGTCACTGGTTCTGGTCACGTGTCCTCAAGGCATTAATGGGTCTGTCCTGTTCCACGCAGTGCTACAAAAGTTCCAAGGACCAGCAGCCTCAGATGGAGCTGCCCCTGCAGGGCTGCAGCATCACGTACATCCCGAGAGACAGCAAGAAGAAGAAACACGAGCTGAAAATCACCCAGCAAGGCACAGACCCTCTGGTCCTCGCCGTCCAGAGCAAGGAGCAGGCCGAGCAGTGGCTGAAGGTAGGCCATCTG--------------------------ATAGGGC--TGTGAGACACCTTTACTTCCAGATTCACTACATTGCTAAGTTGCCTAAAAC-----CCAGATAGATTAGTCGA---GGGAGTTGT---CTTTTTTAACA----TGTTACATGTTAATTTCACCCCTCCcacatacacacacgcatacacatacacacatacat a score=41119.000000 s hg15.chr4_random 307972 862 + 1219494 cttttttcttctttagtctggtttatt--tttcttgttcctttccagcccattatttctgtctttggctgcttctaatctgctattaaatgtgttcctgttc-actgggttcttaattttggtgatggtagttgtcttagtctacttggattgctctgatgaaatatgataaactgagtggcttatttataacaaatgtatttctcacggttctggagtctgagaagtccaagatcaagggaccgttctattcagtgtctggtgagggcctgcttcctggttcacagatggcatcttccatctgtgtcctcatgtggcggaagggacaaggcaggtctctggggcctcttttataagggtaccaatcccattcatgggggctctgccctcatgacctagtcacctcccagaggttctgcgtcataacaccatcctcttgagggttaggatttcaggatatgaatttgggggaacacattccgtccatggcagtagtgttcagtcctagagtctctaatctttttggtttgtttTTGTTTTAGAGTTCATTTTGGCTTGTATCTAGAATTTCTAGTTGTTTCTTCTTCAGGCTGGAAATACTATTTGTACATTGTTAAATTTCTT-------------TTAGAAACGTTTACT-TGACGTTTA-TCTT--CATAAATGTCATCAGCATGGTGG-TTTGACAGTGG-TTTTGGTGGAGTTTGAACCTGGTTCTGTTGTCTGTTGTGCTGTACTTGTTCATGTCATTTTTGTCATCCTTGTGCCAGGTTATCTCAAGTTCACGCTAGGCATTATATTAGGGGAAAAATT--ATTGAAATCTTtttttataacagctttattgagg----gataattcacat-acc--------------------------------ataaattca s mm3.chr5 34225715 724 + 149719773 CCTTCTTCCCCTTTGGTCTGGCTTCTTTCTTTCTCGGTCCCCTCCAGTTCCCCGTGTC-GTCCT----CGTTTCTGATTTGTTT-------GGTCCCTCTGCTGCTGTGTTC-TAATTTTGGCTTTGGGATCCAtcttattctgcccaggctgctcc-ccaagatgccccaggtggggtggcct-tgaaaagcagcagtttatttctgagctctggaggctggaaattgcaag-tcagggtgcctggggatttggtctctgatgaga----------------------------tgtcctcactgtcctcctgtgtaaagaggg---tggtggccacctgcagtctcttttatgcaggcactgatagcagacagtagggctctaccct-gtgacctcatcacagctcaagtgttggacctcctactgtgactgtgttggagctgaggGGCCCA--------------------------------------TAGTTTTAAGCCCTAGAATTTCTAG----------ATGTTTCTTTTTTA------------------ATCTGGAA-------TTGTCTCTTTTACAGGTTTAAATTTCTCATAAAATACTGGTCTAGCTTTTACCTCTGAACAGGACAGGTATGGTGACTCTGACCCTGA-TTTTGACCTGAACAGGAAGAGCATGGTGGCTCTGACCCTGAGTTTTGCTGGAGCTTGGAACTTACTCTCTTGTCTATTGTG-----TTTGTTCG----------------------------------ACACCCATGCTGGTCATGGTATTTGGAAAGAAAATACATTGAAATA-ATTCTTACAGCAACAATATTGGGT-----ATAGCTCACATAACC--------------------------------ACAAATACA s rn2.chr14 30576268 658 - 107821284 ------------------------------------------------------------------------------TTGTTC-------GGTCCCTCTGCTGCTGGGTTG-TGATTTTGGCTTTGGGATCtatcttattctgttcaggctgctcc-------tgtccaa----gggtagcct-tgggtagcagctgtttatttctgagctctggagtctggag--tgcaag-tcagggtgcctggggatttggtccctggtaaga----------------------------tgtcctcactgtcct-ctgtgtacagaagg---aggtggccacctgcagtctcttttatgcaggcactgacaccagccttgagggctctaccct-gtgacctca------------tGCTGGGCCTCCTACAGTTGCTGTATTGGAGCTTAGGGGCCCA--------------------------------------TCGTTTTAAGCCCTAGAATTTCTAG----------CTGTTTCTTTTTAA------------------ATCTGAAA-------ATGTCTC--TTACAGTTTTAAATTTCTCTTAAAATACTGGTCTGGCTTTTACCTCTGAACAGGATGGACATAGTGGCTCTGACCCTGATTTTTTTCCTGAACAGGAAGAGCATTGTGACTCTGCTCCTGGCTTTTGGTAGAGCTGGGAACTTACTTTCTTGTCTATTGTA-----TTTGTTTG----------------------------------ATGCCCATGCTGGTCACGGTATTTGGAAAGAAAATACATTGAAGTA-ATTCTTACAGCAACA----TGGGTATAGAATAGCAAATACAatcgcttctcagccttttggctaagatcaagtgtagcaAATACA a score=8944.000000 s hg15.chr4_random 309814 125 + 1219494 AAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTCAAGACAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACCTTGAGGCCGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCT s mm3.chr4 148509068 125 + 152921959 AAGGCACTCTACAGTCTATATAAGACACTCCATAGTCTATATAAGGCACTCTACAGTCTATATAAGACACTCCATAGTCTATATAAGGCACTCTACAGTCTATGTGAGACACTCCATTGTCTATA s rn2.chr5 186287466 125 + 191625135 AACACACTCCACAGTCTATGCGAGGCCCTCCATAGTCTCTATGAGATGCTCTGTAGTCTATGTGAGGCATTCTATAGTCTATATAAGGGACTCTGTAGTCTGTATAAGGCACTCTACAATCTATG a score=17305.000000 s hg15.chr4_random 309939 260 + 1219494 TAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACTTTAAGACAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACTGTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTCAAGACAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACTGTAAGGCAG s mm3.chr4 148509046 239 + 152921959 TGAGACACTTCATTGTCTATACAAGGCACTCTACAGTCTATATAAGACACTCCATAGTCT---------------------ATATAAGGCACTCTACAGTCTATATAAGACACTCCATAGTCTATATAAGGCACTCTACAGTCTATGTGAGACACTCCATTGTCTATACAAGGCACTCTACAGTCTATATAAGACACTCCATAGTCTATACAAGGCACTCTACAGTCTATGTGAGACACTCCATTGTCTATACAAGGCAC s rn2.chr5 186287444 239 + 191625135 TGAGGCCCTCCATAGTCTGTATAACACACTCCACAGTCTATGCGAGGCCCTCCATAGTCT---------------------CTATGAGATGCTCTGTAGTCTATGTGAGGCATTCTATAGTCTATATAAGGGACTCTGTAGTCTGTATAAGGCACTCTACAATCTATGTGAGACACTCCATAGTCTCTCTGAGATGCTCTGTGGTCTATGTGAGGCATTCCGTAGTCTATATAAGGGACTCTGTAGTCTGTATAAGGCAC a score=22726.000000 s hg15.chr4_random 310199 354 + 1219494 CCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTCAAGACAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACCTTGAGGCCGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCCGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCT---TAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCACAGTCCATTCAAGA s mm3.chr4 148509285 354 + 152921959 TCTACAGTCTATGTGAGACACTCCATAGTCTATACAAGGCACTCTACAGTCTATGTGAGACACTCCATTTTCTATACAAGGCACTCTACAGTCTACATAAGACACTTCATAGTCTATATAAGGCACTCTACAGTCTATGTGAGACACTCCATTGTCTATATAAGACACTCTACAGTCTATGTGAGACACTCCATAGTCTATATAAGGCACTCTACAATCTATGTGAGACACTTCATAGTCTATACAAGGCACTCTACAGTCTATGTGAGACACTTC---ATAGTCTATATAAGGCACTCTACAGTCTATGTGAGACACTCCATAGTCTATATAAGACACTCTACAGTCTATGTGAGA s rn2.chr5 186287431 311 + 191625135 TCTGTAGTCTGTGTGAGGCCCTCCATAGTCTGTATAACACACTCCACAGTCTATGCGAGGCCCTCCAT---------------------AGTCTCTATGAGATGCTCTGTAGTCTATGTGAGGCATTCTATAGTCTATATAAGGGACTCTGTAGTCTGTATAAGGCACTCTACAATCTATGTGAGACACTCCATAGTCTCTCTGAGATGCTCTGTGGTCTATGTGAGGCATTCCGTAGTCTATATAAGGGACTCTG------------------------TAGTCTGTATAAGGCACTCTACAATCTATGTGAGACACTCCATACTGTATATGAGG-ACTTTACAGTCAATGTGAGA a score=20449.000000 s hg15.chr4_random 310553 379 + 1219494 GCCACCCAGGTAACTGTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTCAAGACAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACCTTGAGGCCGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCACAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTT--TAAGGCAGCCCGCAGTCCATTCAAGAGCCACCCAGGTAACCTTAAGGCAGCCCGCAGTCCATTCAAGA s mm3.chr4 148509297 342 + 152921959 ---------------GTGAGACACTCCATAGTCTAT---------------------ACAAGGCACTCTACAGTCTATGTGAGACACTCCATTTTCTATACAAGGCACTCTACAGTCTACATAAGACACTTCATAGTCTATATAAGGCACTCTACAGTCTATGTGAGACACTCCATTGTCTATATAAGACACTCTACAGTCTATGTGAGACACTCCATAGTCTATATAAGGCACTCTACAATCTATGTGAGACACTTCATAGTCTATACAAGGCACTCTACAGTCTATGTGAGACACTTC---ATAGTCTATATAAGGCACTCTACAGTCTATGTGAGACACTCCATAGTCTATATAAGACACTCTACAGTCTATGTGAGA s rn2.chr5 186287443 299 + 191625135 ---------------GTGAGGCCCTCCATAGTCTGT---------------------ATAACACACTCCACAGTCTATGCGAGGCCCTCCAT---------------------AGTCTCTATGAGATGCTCTGTAGTCTATGTGAGGCATTCTATAGTCTATATAAGGGACTCTGTAGTCTGTATAAGGCACTCTACAATCTATGTGAGACACTCCATAGTCTCTCTGAGATGCTCTGTGGTCTATGTGAGGCATTCCGTAGTCTATATAAGGGACTCTG------------------------TAGTCTGTATAAGGCACTCTACAATCTATGTGAGACACTCCATACTGTATATGAGG-ACTTTACAGTCAATGTGAGA a score=67158.000000 s hg15.chr4_random 362602 373 + 1219494 GGTGTGTTTGGTCGTTTTTCCTCTTTCCAGGCAGGGGGGTGTCCCCTCCGCGTTTTTCCCCTTGTGTTGGTCGGACTCCATCTTTTGCAGGGTGCGGTTGGATTCTCCAGTGTGTCTTTCCGGAGCGTTTCTT---------------TTTCCCTTTGGTGGCTCGGCGCCAGACTAAACCCCCGTGAATGCTGACTCCAGTTT-AAAATCTGTACAACTTCACTTCACCTCAGCCAAAGTTC-TTGCCCCGCGTGTGTTGATTCGCTTCCAGCCAATCAGCGTGCTTCCAAATCAAAAGCTGATGGAGTCACCCACg-gagggagggcgagagtggagggtgggagagagaaagagacgga-gaaggaggaaggc-------gggggtgggtgcgcga s mm3.chr3 49853604 395 + 160674399 GGTAGGGGTGGCCGCTGGTCCTCCTGGCTGGGAGCAGCGTGTCACCTCGGCCTGGCTCCCCGCGTG-GACTCCGTCCCCATCTATTGCAGGGTGCTGGCGGAGTCTGCAGTCTGTGTTTCCCGGGCGATTCTTGA---TTTTCCCCCCTTTCCTTTTCTCTGCTCCGCTGCAGACTAAACACCGGTGATTGCTGACTCCAGTCTGAAAATCTCTACAACTTCACTTCAACTCAGACAAAGCTCTTTGCCTGGCGTGTGTTGAATCGCTTCCAGCCAATCAGCGAGCTTCCAAATCCGAAGCTGCTGGAGTCACCGGAGCGAGGGAGGGCGCGCGTGGAGGGTGGGAGCGGGAGGGTGGCGGGCGCGGGTTGGGGACCCGCTAGGGGCGCGGGAGCGCGG s rn2.chr2 134037657 398 + 246339213 AGTCCGGGTGGCTGCCGGTCCTCCTGGCTGGGAGCAGCGTGTCACCTCGGCCTGCCTCCCTGCGTG-GACTCCGTCCCCATCTATTGCAGGGTGCCGGAGGAGTCTGCAGTGTGTCTTTCCCGGGCGATTCTTGATTTTTTTTCCCCCTTTCCTTTTCTCTGCTCCGCTGCAGACTAAACACCCGTGATTGCTGACTCCAGTCTGAAAATCTCTACAACTTCACTTCAACTCAGACAAAGCTCTTTGCCTGGCGTGTGTTGAATCGCTTCCAGCCAATCAGCGAGCTTCCAAATCCGAAGCTGCTGGAGTCACCGGAGCGAGGGAGGGCGCGCGTGGAGGGTGGGAGCGGGAGGGTGGCGGGCGCGGGCTGGGGACCCGCTAGGGGCGCGGGAGCGCGG a score=324587.000000 s hg15.chr4_random 362978 2199 + 1219494 agagaaggg---gagatggg---ctggtgggggctggggga-------ggagA-TGGGAGCCAGTCCTTCCCTGTTCCTTCCTTCTTCCTCCCCACTCCCCCTCCGCCTTTCAATCTACTGCATTCACTTTCTGTGAGCGTGCCATGACAAAGGGGAGACAAATTACA----------------------------------------------------GAAGAAAAA--CTTTAAATCAACTTCTGGTCGCCTTTATTTATAT--GGCACGTTAAATTCTTCTTGTTTTCTTAATTGCCC-TTTCTTCTGCCACAGACATGTAATCATCTTGCTTTTCA--TAG---TCCTTAAGTGCTAGTTTAACTTAAAATACCTCTAAGTGCGTTTTGTTGGTGGAGGAATTTAATACAATTTGAAAACTTGCTTCTAATTATGCTTCTCAGACCACCTCCTTCCCCACTCCCTCTGTAAATACTTGGGCCTTTCTCCTTCCAGGAGCA--CAAGCAGATTTTCTTGGGGCTCTGTTTTTAAAGAACGGAGCAAGTAAAGAGGTTTCATTTTCTGTTTTCTTTCATCTTTA--TTCTTTGAAGATAAAAAAAGGG-CTATCTTGCACTCTTCATTTCTCTTAATTAGCAAGACTTAAGGGAACACCTCAGAATTTGGAACTAATTAACAATATAGTTCTACCTTGTATGATTTCTTTCCTTGAGTTTGGGCAAAA-TTGTTTGTAATATTTCTTT---------------------GTCCTGTACTTCAAAAAAATCCTATTTATCTTGGGTAAAA--------------GACACTGCAAGCTTTAGCATGCCAATTTCTACCAAAAG-GCACTATCTATACATGGCTAGTCTTTGCAGTGAATACAGGGGGGACATGGACTCAATAGTTTACAAGTCAAATTTTTATAATATATGCATTATTTATGAAAACACTT--CAGATATGTATTTTAAAAACCCCAAAGGTTGTTTACACTGACAAATCAAATGCCTGAGCTGAAAATTGCATTTTGTATGCATCAAAATGCTAGGAAATATCATGGGAGGCTTGTGCTCTATCCAGGTCACAGAAACTGATACGGTATTCTTATTTGAAAATATGATTATTTATGATGTTCTTTCTGCTCTGCAATTCCTTTTAAGTTTATCATCGTGGCTCCATTTTTGCTGCTTTTTTT--CATACCTTTTTCCTTATTCCTCAGCTGTCTTCATCCGCTTGCATATTTGCTGTTTCACAGAATGTCATTGTCAC-TT-TTTTCCATTTATTTTTTCTCACTGTCTATTTTGCCCCCCAGAAACATA----TAAAAAAAGTAATTTTCTGA-TTTTTCCACTTTGCTTACTCTCAGCAGAGCTCAGCTAAAGTCACTAAGAAGGCTCTTTCCAAAAAAGAAAGCAGAG--GAGTCTCAGCGTGAATTCTCCTTCTTTTTAGGCATTCAAAAGCATTTTATAAGCCATTGTCTT-TTTTTC----CCCCTCCTGAAATCAGTGCTGTGTGGCAAATTGTGCAGAATAGAAATGCCTATAATGAATGTATTTAGTACTGGGTCACGCTGATGAACATTCTGCCCCCATGAATAATACTGTTTTACAAGTTTGTAGCCCTTTCAAATTGCTGATCCCCAAACCCTATAGGCAAACTAGGAAAACTACCACAAGCAAGGGGGACTTTAGAAACCCATAGCCATCTGGCCTAGATCTCTAACAATCTGAGCCAATAATTATATCAATTCAGGCTTTAGCGAACCCCTTTGCAAACACCAAAAGAGCAAAGAAAGGAATTAGTGACTATTCAAAGTTGGGGTGAGAATTCAAAGGTAACCTAATTCCATTAGTTCTAGGAAAATTTTCTTTCAGAATTTGATAAGTCTACCCCCCAAAAAACTTCAAGAGCAATCGATTTGATTACCTTGATAC---GGATTTTTTTTATGCTTAAAAAGTAAAAA----------TAATAAAAAGCTCTTTTATTTCTGACAGTGGGCTTGAACAGAAATAATCATTGTGAAAAAGAGCTTCACTGTAACTTACTGAAATATTAA--ATAACTTGTAAAATAATATAT---CCTCCAAAATGATATGTTTCTATGAGTAAGTATTTAAAGAACTTGGCATTCTTTCACCAACAGTGGCTTTTTTCACTTGCAATATCATCCTTA--------------CCACATATTATTTCCTTTTCAGCTTCCCAATCTCTTCCTGAGAAGTCACATGTATCTACTCAAAAGTGATGTGCTTTCGATTTATCCTTGTTATGCACTGATCTGTTCTTTATGTTTTTTTCCCCAAAAGTACAGAATT s mm3.chr3 49854107 2159 + 160674399 GGTGGCGGGCGCGGGTTGGGGCCCCGCTAGGGGCGCGGGAGCGCGGCCGGGGG-TGGGGTTCAGCCCTCCC-----------------------GCCCCTCCTCCATCTC-----------CATCCACTTTCTCCAAGCGTGCCGCGACAAAGGGGAGACAAATTACAGCAGGAGAGCGGTGTGGGGGTGGGGAGACCGGGAGGGAA-GGAAAAAGAAAGGAAGAAAAAAACTTTAAATCAACTTCTGGTCGCCTGTATTTATATATGGCACATTAAATAGTTCTTGTTTTCTTAATTGATCTTTTCTTCTGCTACAAACATGTAATCATCTTGCTTTTTT--CAGGGTTCCTTAACTGCTGGTTTCACTTAAAATACCTCCAAGTGAATTTTGTCGGTGGAGGAATTTAATAAAATGGGGAAACTTGCTTCTAATTATGCAC------------ACACCCCCTCCCCCTCGGCG-------GGTCTTTTCTCCTCCAAGGAGCA-GCAAGCCGATTTTCTTGGAGCTCTG-TTTTAAAGAACAGCCCAAGTGGAGAGGTTTCATTTTCTGCTTTCTTTCATCTTTA--CTCTTTGAAGATAAGAAAGGGGCCTATCTTGCACTCCCGATTTCTCTTAATTAGCAAGATTTAAAGGAACACCTCAGAGTTTGGAACTAATTAGCAAAAAAATTCTACCTTATTTCAGCCCTTTCTTT-AGCTTGAGCAAAA-TTGTTCCatatatatatatatatatatatatatatatataGCCTTGCACTTAAAAAAAT-CCTATTTATTTTGGGCAAAATTGATAGCTTGGGTAAAATTGGTAGCCTTCGCCTAGCGAATTCTTCCAATAGAGTACTATCTACCCATAGTGAGTTTTCACAATGAGTTCTGAGGAGACATGGACTCAATAGTTTACAAGTCAAATTTTTATAATACATACATTATTTATGAAAACAGTTTCCAGATATGTATTTTAAAAA-CCCAAAGGTTGTTTACACTGAGAAATAAAATGCCTGAGCTGAAAATTGCATTTTGTGTGCATCAGAGTGCT-GGAAATATCTCAGGAGGTTGGTGCTGTATCCAGGTCAC-GGGGTTGATATGGTATTCTTATTGGGAAATATGATTATTTATGATGCTCCTTCTGCTCTGCGGCTCCTTTTAAGTTTATCACTCTGGCTCCATTCTTGCTCACCCTCCCCACCCCCCCTTTGCATTATCCCTCAGCTGTCTTCAGCTACTTGCAAATTCTGTGCTTCACAGAATCTCCATGTAAC-TTATTTGACATTTA-TTTTTCTC-----CTATTTTGCCCCCCAGAAACACATTTTTTTAAAAAGTAATTTTCTGA-TTTTTCCACTTTGCTTACTCTCAGCAGAACTCAGCTATAGTCACAGAGAAGGTACTCCCCCAAGAAGAAACCAGAGAAGAGCCCCAATACAAACTCTCCTTCATTCTAAGCATTCAAAAACATTTTATGAGCCATTGTCTCACCCCCATTCCCACCCCCAGAAACCAGTGCTGTGTGTCAAATTGTGCAGACTAGG-ATGTCTGCTATGAATGTGTTTAGTGCTATGTCACTCTGATGAACACTCTGCCCCC-CCAATAACACCATTTTACAAGTTTGCAACCCTTTCAAATTGCTGATCCCCAAACCCTATAGACAAACTCAGAAAACTACCATAAGCAACTGGGACTTTAGAAACTCACAGCCATCTGGCCTATGTCGCTAACAATCTGAGCCAATAATTATGTCAGTTCGGGCTTTAGAGAGCCTCTCTGTAAAAGCCAAAGGAACAAAAAAAGGAGTTAGTGACTATTCAAAATTAGGGAGAGAATTCCAAAGACATCTAAGTCTATCAGTTTGAGG--ACTTTCATCTGTGAATGTGATAAGCATACTGCCACAACGCATGC-------CTTGGCTTGGTCATCTTCATTTATGGGATGCGTCTTACATTTGC----TTAGAGCACCATGCTTTAGCAAATCTTTCTCTTCCTCCAGGCAGTGTGCTTGCCCATAAAT----ATTATGAAAATGA-CT------TCATCTTCCAAGGTATTCACCATAAATTGACAGGTGAGATGTGGCCATTCAGAATG---TGTTTCTGTGCTTATGACTCTAGCAATCTTGGAATCATCTCGCGGATgcttgcaat-----ct-----ctttacacttagag------------------------------cagagg-ctaatgtcttcctgagtggtt-tacatagc----------------------------tacttggtct----------------------------------ggGATAGAATC s rn2.chr2 134038009 2105 + 246339213 GGTGGCGGGCGCGGGCTGGGGACCCGCTAGGGGCGCGGGAGCGCGGCTGGGGGGTGGGGTTCAGTCCTCCC----------------------CGCCCCTCCTCCATCTC-----------CATCCACTTTCTCCAAGCGTGCCGCGACAAAGGGGAGACAAATTACAGCAGGAGAGGGGAATGGGGGTGGGGAGACTGGGAGGGAAAGGAAAAAGAAAGGAAGAAAAAA-CTTTAAATCAACTTCTGGTCGCCTGTATTTATAT--GGCACATTAAATAGTTCTTGTTTTCTTAATTGCCCTTTTCTTCTGCCACAAACATGTAATCATCTTGCTTTTTTTTCAGGGTTCCTTAACTGCTGGTTTCACTTAAAATACCTCCAAGTGAATTTTGTCGGTGGAGGAATTTAATAAAATGGGGAAACTTGCTTCTAATTATGCAC-------------CTTCCCCTCCCCCTCGGCG-------GGTCTTTTCTCCTCCAAGGAGCACACAAGCCGATTTTCTTGGAGCTCTG-TTTTAAAGAACAGCCCAAGTGGAGAGGTTTCATTTTCTTCTTTCTTTCATCTTTTTTCTCTTTGAAGATAAGAAAGGGGCCTATCTCGCACTCCTGATTTCTCTTAATTAGCAAGATTTAAAGGAACACCTCAGAGTTTGGAACTAATTAGCAAAGGAATACTACCTTATTTCAGCCCTTTCTTT-AGTTTGAGCAAAAATCTTTCCTGATATTT-------------------------GTCTTGCACTTAAAAAAAAATCTATTTATCTTGGGCAAAATTGATAGCTTGGGTAAAATTGATAGCATTCGCCTAGCGAATTCTTCCAATGGAGCACTATCTATCCAGAGTGAGTTTTCACAATGAGTGCTGAGGGGACATGGGCTCAATGGTTTACAAGTCAAATTTTTATAATACATACATTATTTATGAAAACAGTTTCCAGATATGTATTTTAAAAA-CCCAAATGTTGTTTACACTGAGAAATAAAATGCCTGAGCTGAAAATTGCATTTCGTGTGCATCAGAGTGCT-TGAAATATCTCAGGAGTATGGTGCTGTATCCAGGTCAC-GGGGTTGATATGGTATTCTCATTGGGAAATACACTTATTTATGATGTTCTTTCTGCTCTGCGCCTCCTTTTAAGTTTATCACTCTGGCTCCATTCTTGCTTACCCTCCC--CCCACCTTTTGCATTATTCCTCAGCTGTCTTCAGCTACTTGCAAATTCCCTGCTTCACAAAATCTCCCTGTAACTTTATTTTCCATTTA--TTTTCTC-----CTATTTTG-CCCCCAGAAACACA-TTTTAAAAAAAGTAATTTTCTGATTTTTTCCGCTTTGCTTACTCTCAGCAGAACTCAGCCACAGTCACCGGGAAGATTCTTCCCCAAGAAGAAATCAGAGAAGAGTCCCAGTACAAACTCTCCTTCATTTTAAGCATTCAAAAGCATTTTATGAGCCATTGTCTT-CCCCCA----CACACCCCAAAACCAGTGCTGTGTGTCAAATTGTGCAGAATAGGAATGTCTGTAATGAATGTGGTTAGTGCTAGGTCACGCTGATGAACACTGTGCCCCA-TGAATAATGCCATTTTACAAGTTTGCCACCCTTTCAAACTGCTGATCCCCAAACCCTATAGACAAACTCGGAAAACTGTCACAAGCAACTGGGACTTAAGAAAGTCACAGCCATCTGGCCTATGTCCCTAACAATCTGAGCCAATAATTATATCAGTTCAGGCTTTAGAGAAC----------------------------------------------------TAGGGGGAGAATTCCAAAGTCATCTAAACCTAAGAGTTTGAGG--ACTTAGCTCTGTGAATGTGGTGAGCATACTGCTAGAACTCATGC-------CTTGGCTTGCTCACCTTCATTTACAGGATCTGTCTTCTGTTTGT----TTAGAG-----TGCTTTATCGAGTCTTTAT------------------------CACAAAT----GTTATGAAAATGA-CTTCAGTGTCATACCCCAAGGTGTTTATCATAAATTGACAGGTGAGATGTAGCCATTCGGAATG---TGTTTCTGTGATTATGACTCTAACAATCATGGAACCATCTCATGGAGTATGGC---------------TTTTACACTTACAGCACTATGGAAACCAAATATAATTTCATTTTCAGAGG-CTAATGTCTTCCTGAGTGGTT-TACATATC------------ATGTA---TCCATTTTTCCCCCGCCTATGGTACT-------------------------AGGGGTAGAATC a score=36191.000000 s hg15.chr4_random 365177 469 + 1219494 AAAAATAAATCTTT---TCTTT----------------------------GTAATATTGTATCACTAGTTCTAACAATTTAAATTTTCCTCATTTGGTATCCCTGAAAAGATAACATAAAACTA-----------TCTCCCAAACTATTTACTATCCATGAAAGGGTTTATATCAGGGGAGAAAAACT------------GATAAACTTCTATTAGCTGTTATC-TAATGATGACCTGGTTGAACTTCATCCTTCTGGAATTTGATGAAGTCATGAAAAAGGGGTAGACCCTCTAAAACAACTTC--AGATAACCAGTAAGGGAGAGTTGATTGAATGTTTCTTAAAGTCCACCCTCTTTTGATATGGCAGTCTTTGTTGCCAAAGAAAGGAAGTGGGTCC---TCTTGAAGACTGTGCCCTCTTGAGTGATGTTAAGCACAGCAGCAAAGTGCTTCTAAGCTTCTAGAGGCAAATCGCAGA-TACATCCATCCTGTTGTGCATA-TTTTATCTATGAAGCTCCTTTTACC s mm3.chr3 49856390 472 + 160674399 AATAATATATCTCT---TTTAT----------------------------------ATGTTTCATTAATTCTAACA------------ATTATTTCTTACAACTACAAAGAAAGTacaaaaacacaaacaaacaagcaaacaaacaaaTTCCTATCTCTCAGA----CCACACCTGAGAGAGATGAGGGtttttttttttattattattttttaaCCTGGTCTCTTGACCTTGGCCTGATACAACTT-ATTTCTTTAGACTTTCACAAATGTGGGAACAAGTACATGGCCTTCTCCAAGAACTTCTTAGGCAGCCAGTAGAAGAAAGCAAATAGCATATTCCTAAAAGTCCATCACC--TTGATGTGGCAG-CTTTTTTGATTAGGAAGAGGAGTGTTTTCATTGCTTGACTACTGTGCCCATGTAAGTGAGGTCAGATATGTGAACAAAGTGGTCCTGTGCCTCTGGATTTGAA--GTTGACTGGGTCTAGTCTGTTGGGCATACTTTTTTCCATGATtcccctcccctc s rn2.chr2 134040242 494 + 246339213 atctatctatctatctatctatctatctatctatctgtctgtctatctatgt-atAATGTTTCACTAATTCTAACAGTTCAAAATTTCATTATTTCTTACAACTAC----AAAGTACAAAAACA---------AAACAAACAAACAAGTCCAAATCTCACAGA----CTACACCTGAGGGGGAAGATG------------AGTAAGCTTTGTTTACCCAGTCCCTTGACCATGACCGGATACAACTT-ATTTCTTTAAGCTTTCACAAATGTGTTAACAAGCAGATGACCTTCTCAAAGAACTTCTTAGGCAACCAATGGAAGAAAGCAAACAGCATGTTCCTAAACATCCATCACC--TAGATATGGCAG-CTCCTTTGACTAGGAAGAGGAGCGTTCTCATTGCTTGAACACTGTGACCATGTAAGTGAGTTCAGATATGAGAACAAAATGGCCCTGTGCCTTTGGATTTGAA--GTTGACTGTGTCTGGTCTGTCGGGTATA-TTTTCTCCATCACACCCCTCCTCTC a score=98711.000000 s hg15.chr4_random 365649 1170 + 1219494 -------------------------------TCAGTTTAATTGGGCAGAAAACTG-----------------CTAAACCTAGATAAAAGATATCAAC-----CGGCATTTACAATACATCCTTTCACCTCTAATAACACTTTCACCATGCCATTTACTTTTATTACTTTTGT-TCTAAGGAAAATTAAGCTTTATAATTCTAAATTTTGAATGATTTTGTTCCTATTCAAGAGGAAGGAAAACATAGAACTCAATTGTAAGGCTCAAATTTATCTGCATTACATGAAGCAAAGTGTCTCTTTTGGTACTGGAATACAAGATGAAAGTCACTAAAATTCCTTACACGCAGATATGTATTTTGTTTTTTGATTTTTTGCTATTAATTTATATTTTATTAGAGCATATGAGA--TTAAAAGG-----------TAGGTTAATAAATATTCACTTTTATCTCACTATAT---------------GTCAAAATAATGGCGTGAGACTTACA----ATCTTCTGATTGATTGGTATAGT-TCACAATCTTTCCTCACAGCATTTGTTGTGAAACATAGAAGAAAATCATGGTCCTGCTTGGCACCATATGGCTGTAACAAGCTTAAATAATTACTCTGC-----ATCCTGGGAAATTAG----GGACAAAG----------GCTTTTCCAGACAAAGGTTAGTAAAGTTAAGGAATTCCAAGACTATAGACCTGCTTAAGATAAAGAGCTTGCTTGGCTTTTTGTATGAGCCCAACAA--------CTGTGggtaccaccagttggcagttatgtaatcctggacaaattatttaacttctctgcaaatgtataatcct--ccatgaggtgggagtaataatttactctaaaaaattcttttaagaatttcgatgactggggctttccacaaaggctggccc--agtaaacacacaacaaaggtta---------------------gttTCCT-----TTTCTTAACCTGTGTGTGTCTGTTTTCCTCCTAACATTCATTGAAGAAGAACAAAATG-----TGGATTATAGCCGCAGAACTTGGTACTTCTC-AGACTTTTGGTTTAGATGCATACATAATTTTATGTTGAAAAGATAAAGCTCTCTTCATCTTGACTTATAAAGGTCACCTGTGAAACATAATTGACAAAAATAATAGTATTGAACTGTGATGGTCTTGAAAACTTGCTGCTTTCCTGAATAAAA--TTCCAATACCTACCAACTATACTCAACTATACCTCCAGGCCCTAAACCATAGAAACATATCTACAAATACAATTAGAAG s mm3.chr3 49857024 1195 + 160674399 tctctccctctctctctctctctctcATTTATCCATCTACAGGCATAGGAAAATGGGTTCGTGTATGATGACATGTCTGTAGGTAAATGATGTGGTGGGTCGGTGTGTTCAC-ATGCATGTGTAAACATGACTTCACATGTACA-TGTGCCATTTATTTTGATTCCTTTTTT---AAAGAAAAAGTGGTATTTCTCTGTCTGAATCATTAATATTTTCCACCCTCCTAACAAGTGAGGTAAG----AGCCTCAGCTAGACAGCCCAAACATCTC-ATATTAAAGGA---AAAATGTCTCTTTTGTGGTCAATATGTAAAGTTAAGAATGC----AATTCTAAAATGCACATATGCATTTGG---TAAACATCATAGATATTAACCTACATCCCATAACAACATACAAAAATGTAAAACCAGGTAGAAGTCTAGAGTA-------TGCACTTGTAACTCACTATATCGCATCTTCTCTACCACCAAAATA--------AAGCACATAGTTCATCCTCTTCTAGAATGAGATAACATTTCAATCTCCCCTGA---TATTCAT-------------AGGAA---ATGGCTCTCCTTGACACCATATGGGCAAAATAAGCCACAATAATTGCTCTACAATCTATTCTGGTAAATTAGAAAATGAAAAAAAAAAACAAAAGCTTTATCTGACAAAGATTAGTGAAGTTAAGGAAACTCAGTACACCAGAGCTGATTAAAAGAAGGAGGCTAGTAG---------ATGAGTCCAGCCAATGAGTGATTACAGGTGCTACCAAGTGAAAGGTGTAGAATTCTGAGATATTTACCTAACTTCAACGGACTCACACAATCCTGTCCAGGTAGTTGTTCTAATAACTCCCTATACAACATTCTTGCAAGTATCTTAATCATTAGTAAATG-AGCAAAGGCTGGGTCAGAGGAGACATGTGACAAATGTAT---------------------------------GCTTTTGGCGTTTCTGCATCTGTTTTCTGCTTAACATTTGTTGGAG------GAAAGGGAACCTGTGCTATATCTCCACCCCTTTGTTCTTTTT-AGGT----------------------AGTTTAAGCTGGGAAGCTGGAGCTCTTTCCAATTGGCTTTAAGAAGGCAAATTATGAAGCACAATAGACAAAACTAGCCATATGGAACTATGAAGATCTTGAAAAGCAGTGTTTTCACTGAGGGACATGTCCTAAGATTTATTAAGCATAC-CAAGTAGCTCTCTAGATCCTATACCATACAAATATACATAATACTACAATTAAGAG s rn2.chr2 134040712 1217 + 246339213 TTTCTCCATCACACCCCTCCTCTCTTGTTTATCCATCAATATGCATAGAGAAATGGATTTGTATGTGATTACATGTCTGTAGGTTCATGTGGTGGTGTGT--GGGTATTCAC-ATGCATGTGTATACACGTGTTTACATGCACA-TGTGCCATCTATTGTGATTCCTTTTTTCTTAAATGAAAAGTCATCTTTCTACACCTGAATCATTAATATTTTCCGCCCTCCTAACAAGTGAGGGAAGT-TAAGACTCATCTCTACAGCCCAAGTGTCTC-ATATTGAATGA---AAAATGTCT--GTTATTGCCGATAGGTAAAGTTAAGACTGC----AGTTCCAAAATACAGACATGAATTTTG---TAAACATCATAGTCATTAACCTATATTCCATAACAGCATATGGCAATTTAAAAGCAGTCAGAATTTTAGAGTAATAAGTATTCACTTGCAGCTCACCATATCACATCCTGTCTACCACCAAAACATAAG---AAAGCACATATTTCATCCTCTTCTACAATGAGTTAACATTTCAATCTCCCTTGA---TATTTGTT------------AGGAA---GTAGCTCTCCTTGACACCATATGGACAGGATAAGCCACAATAATTACTCTACAATGTATCCTGGGAAATTAGAAAAGGACAAAAA---------GCTATATCAGCCAAAGATTAGCGAAGTTAAGGAGACTCAGTACTCCAGAGCTGACTAAAAGAAAGAGATTGGTAG---------ATGAGCCCAGGCAATGA----TTACAGGTGCCACCAACTGAAAGTTGTAGAAATCGAAGAAATGTACCCAACTTCAATGGATTCACATAATCCTTCCCAGGTAGTTGTGCTAGTTACTCCCTACAAAACACTCTTGCAAGTATCTTAATCATTGGCAAATG-CACAAAGGCCAAGGCAGAGGAGACACATGACAAAGGTATTGTCTTAGACTTTCTGTATATGTTTTGTGCTTAACGTTTAACCTTTCTGTGTCTGTTTTCTGCTTAACATTTGTTGAAG------GAAATG-----TGTATTATATCTATCACCCTTTGTTCTTTTTTAGGT----------------------AATTTAAGCTGGGATGCTGAAGGTCTCTTCAGTTGGCTTTAAGAAGGCAAATTATGAAGCATAATAGACAAAACTAGCCATATGGAAATATGAAGATCTTGAAAAGCTGTGTTTTCACTGAAGGAAATGTCTTAAGATTTACTAAGCATAT-CAAGTAGATGTCTAGATCCTACATCATAAA---------AATACTACAATTAAGAG a score=93748.000000 s hg15.chr4_random 366835 894 + 1219494 TTTTCTTTTATATTTG-ATAGTATACACATCTACTATTTGCCTGTTCTCAAGGCTTTTGCACTAAACAGT-TGT---TTCTTTAAATTTCATGTGAAACTGTAGCAGGAAGACAAAAGGATATGATTTGATGTATCGTGGTAGTGACAAGGAAATATAAAATTTGTCAAATAAGA-TTTTTATTTAAAA-ACCAACCTTAGGCCTTTTGTCAATCACATTACATCTCTCTATGTTGTTCTTCCT--TTATTCCATTTACTAATAGATTTAAGAATATAATAATGAAAAGTCACCAAACAATATGAACTCTTTATGAGACAAAATTTATCAACATAAGATCAAAGGTTGGGAAATGAAAATAGATCCCAAACTATCTTTAGATGTGTGTAACAGAAATAGACTTTAGTTGAATTCTGATCAAAACTGAATGTGCTAAGCACCCACAGGAGGCCCACGCACCTGGAAGCATAGCTGTGCTAGGGCTGTGAGGCAGCACAAACCAGGGGCCAAGAAGAGTTGGAGTCCGTGAAATACAGTGACAGGTGCTAGGTCAATTTTGTCTTAGTGGGCAATCAGTATTTAGGATGTTCTGCCAAAGGTAATATGCCAAGTTCCAGCAGGTGACTTAGGGTCTGGCAAAAGGCAATCTATTGAGTCCAGATGAAAGGCATGTAGGTGAGCTGCTATTCCAAACAATACGACTTCCTTCAGGACTTCCAAACAAGGCAGGTTATGAAATTCAGGATTAAAACAGGAAGAACAAAACAGGCAC--CTAGAAGTTCAGTGTTTTGTAAATGGGCACATACGAAAAGCCTCCTCACAATTGGAGACCAGATTGC--------AAAGTTAAACTAGATGGCAGCAaaattgacttttaaattgacttttaGGATTATTCAT--CTGAAT s mm3.chr3 49858476 827 + 160674399 TGCTCAATAATGTTTG-ATCAGATATACATCTGCTATGTGCCTGTTCTC----CCTTTGACCTAAAATGTATGTAAATCATCATAATTTTATATGATGTTTTATCAAG------------------------------------AACAAGAAAAGataaaatttatcaattataactttttatttaaaa-----------tGCCTTTTCCCAACCATGTAGCATCTCTCTATGTTGCTCTGCCT--GGACTCCCTATACTAATCCAGTCAATAACATAATAGT--AAAGACTG-----AATACTCTCTTCCCATTGGCACACAATCATCAACCTAAG-TTAAGAGACAGCAAATGAGACTCTATCCAGAA-----TTTCTACTTGTGGAGTCAGAAGAAACTTTGG-TAACTTCTGATAAAAACAACATGGGCTAAGGA-TCACAGGATAGCCACACACCTGGAGACATGGCTGT-------TTAGGAGGCAACAGGAGCCAAGAGGCAGAAAGAGTTGGAATCTGCTGACTGCTATGACAGGTGGTAGGTTAATTGTGTCTGCATGGGCAGTCAGTATTTGGGATGTCCTGCCAAGAGGACTATGCCATGTTCCAGCAGGTGACTTAAAGTTTGGCAAAAGAAGATTATCTGTGTCCAAATGAGGGACATCTAGGTGAGTTGCTATTC---ATTTTATGA----CTCCAGGTTTTTCAAAACAGGCAGGTTCTGAAATTGGACATAGAAACAAGGAGACTAACACAGGCACAACCAGAAACCCGGAAAATGGAAAGTGAGC----CCTAGCATCCTTGTCAAAATCTGCAACTGGGTCTATATAGGTCGCAAGTCAACAAGAT-TCAGCAAGGTTGACATTAGGATTAGATCTTAAATCTGTTCTTGTTTTGTt s rn2.chr2 134041938 814 + 246339213 TGCATAATAATCTTTATATCAGATATATATCTGGCATGTG-------------------ACCTAAAAGGT--GTAAATAATCTTAATTTTATATAATGTTTCATTGAG------------------------------------GTCAAGGAAAGATAAAATTTGTCaattataa-tttttatttaaaaatGTAGTATCATGCCTTTTCCCAACTATGTGACATCTTTCTTTGTTGCTCTCTCTCTGGACTCCCTGTAGTAATCCAGGCAATAATGTAATAGT--AAAGACAGTAAACAGAACTTTCTTCCCATTGACACACAGCCATCAAACTAAG-TTAAGAAATGGCAATTGAGATTCTCTCCAGAA-----TTTTAACTTGTCGAGTCAGAAGAAACTTTGG-TAAATTCTGATCAAAAGAAAATTGGCTAATGG-CCACAG-ACAGCCACACGCCTGGAGACATGGCTTT-------TTAGGAGGCAGCAGAAGCCAAGAGCCAGAAAGAGCTGGAATCTACTGACTGGAGTGACAGGTGGTAGGTTAATCGTGTCTGCATGGACAGTCAGGATCTGAGATACCCTGCCAAGAGGGCTATGCCAAGTTCCAGCAGGTGACTTAAAGTTTGGCAGAAGATGATCTTCTGTGTCCAAATGAGGTACATCTAGGTGAGTTGCTATTC---ATTTTATGA----CTCAAGGTCTTCCAAAACAGGTAGGTTCTGAAATTCGAGATTGAAATGAGGGGACTAACACAGGCACACCCAGAAATCTGGAGAATGGAAATTGAGC----CCTAGAATCCTAATCAAAATCTGCAACTGGGTCGA-------------TCAACAAGAT-TCAGCAAGGTTGACATTAGGATTAGCCCTTAAATCTGTTCCTGGGTTGTt a score=20832.000000 s hg15.chr4_random 367729 267 + 1219494 TCCTTAAATTCTTTCCTTTCAGTACAGTACCTTGAG--GCAAAAAACTAAGCCTACAAAGCGTCTTCCTATAGTTGCAGCTGAGAAGATTTGTGGAAATGGGTGGTGGGGAGACTAAACCCTTAGGTGACTTGAGTCTCAATTTTTAGTTTAAGCGTtgccattcaatgtatgggc---tttaaagcagcagcatgggcattagctgtaagcttgttagaaatgtagagtctcagacggtaccccagacctacttaaacaaattctacattt s mm3.chr3 49859447 235 + 160674399 TTCCTAAAACCAGTCCTTCAAAAGCATCACCTAAAGCAATAATAATCTCAGCAGACATAA----TTGCTACAGTTGCAACTGAAAAGTCTTG-------------------------------GAGTGAAGTGAGTCTCCATTCTTTAAGCAAGACTGGTAAGTGAGTG-ATGAGAGTCTACAGGGCAACAGCCAGGGTGGCACATGGAGCCTTGTGAAAAATGCAGAATCGCAGACAGCA-ACTAATCCCGCTTAAACACACTGTGCATCT s rn2.chr2 134042896 228 + 246339213 TTCCTAAATCCACTCCCTCAAGAGCATTATCTAAAG---TATTAATTTCAGCAGACATAA----TTGCCATAGTTGTAGCCATGAAGACTTG-------------------------------GAGTGAAATGAATCTCCATTCTTAAAGCAAAACTGGTCAGTCAGAG-ATGGCAG--TATGGAGCAACAGCCAGGGTTTCATATGGAGCCTTGTGGAAAACACAGAATTTCAGGCAGCA-ACTAATCTTACTTAAACACAT--TGCATCT a score=16616.000000 s hg15.chr4_random 372782 332 + 1219494 TCTTTCTATGGTGGTGGTGGTTGTAAAGAATCAAATTTTATGTAAACTTGGTCAATAATATAAT---TGTCTCATTATACTATATTGTTTTGGCTGTTTGGCAGGATTTTTCTTCCCAAAACA-TGTATTTTTT-TTA----TTTTCCAAGGGTCCTCAAAACATACTTTCTTTCAGAAAGTTACTATCTCCAGTTTGGTGCCCCTGTGTTACTAATGC-----------AGATAAGCAGCTTAGAGGAATAGA-TCTTTTAGTTAAGTA---TTTTTTTA---AAATATGGCTTAT---TTTCCCTAGACTCCTTTGGTTTATGTGAGAATTTGTATTGTTAAGATAAAATTGTATTCTAt s mm3.chrUn_random 98119751 355 - 117911829 TTTTTCTATCCTCCTTGGCATTATACATAACTGATTCTTTTAAAACATTGCTCAATTATAAAATGTATGTCTTATTCTGAAAACTTACTTTTGTTTCTTAGATAAGTATTTCTTCCCAAGAGGTTGTATTTCTT-CTACAAATCTTACAA--GTCTCCCACACATTCTTTCTTGTATGAAGTGTTTGTTTATAAGTCAGTG-CCCTGTTTTACTGATGCTTGATGAGTTTAAATGAAGGGTTTGAAGGAACAGGGTCTTTTAGTGCCATAGAGTTCACTTAACTAGGTGTCACTTTCT--TTTTAGTAGAATTATTTGTTATATGTGAGAACATTTATTTTAATGATTATAATA-ATTCCAG s rn2.chr2 112258787 266 - 246339213 CTTT-CTATCCT-------------------------------------------------AAGGCCTATCCCATTCTGCTGTCTTTCTTTGGTTTCTTAGATGAGTATTTCTTCCCAAGAGGTTGTATTTTTTTCTACATGTCTTGCGA--GTCTCCCACACATTCTTTCTTGTATGAAATTTTTGTTTATGAGTCAGTG-ACCTGCTTTACTTATGCTTGAAGTGTTCAAATGAAGGGCTTAGAGGAATGGGCTCTTTTAGTCTAATAGAATTCACTTAACTAAAAATCACTTTTTGTTTTTAGTAGAATTA-------------------------------------GTA-AT----- a score=22215.000000 s hg15.chr4_random 373638 231 + 1219494 TCTACATCCCCCTAAACTGGTAGGCTTCTTTAGAAAATGTTCTAGCCAATGTTGGCAAACTAGGGATTAATGTTTTATACCATCCAGAATCTACATATTGATAATTGATATCTTTAGAATGAAGAAATGTATCTTTACCATCACGGGTATTTGTTTATTCTCCACATATGTCAGAGGAAATGTGCAAGTATTCACCTGCACATCTACAAATAGATATAAGCCTATAAAAGT s mm3.chrUn_random 98120106 213 - 117911829 CCAA--------TAAATTGTTA----TCTATTTGAAATTTTCTAGTTAATTTAAGTAAAACGGAATTGGATATTTTATTCAGCTCAGAGTGTACAAAGAGTAGATTGGCAAATTTAAAGTGAA-AGATGAATCTTGACCCTCACAGCTAACTGTTTAT-----GCAAATGTCAAGGGTAATATGCAAGTACTCTCACGCTTGCATACAAATAGACATAAGCCTATAAGAGT s rn2.chr2 112259053 202 - 246339213 --------------AGTTGCTA----TATATTTGAAATTTTCTAGCTAATTTAGGTAGAACAGAATTTGGTGTTTCATTCAGCTCAGAGCATATGAAGACATGTTTGGCAAATTTAAAGCAAA-AGATGAATCTTGACCCTCACA----ACTGTTTAT-----GCAAATGTTAAAGGCAATATGCAAATATTCTCATGCTTGCATGCAAATGGACACT-GCCTTTGTGAAT a score=43005.000000 s hg15.chr4_random 374547 600 + 1219494 gagagagtgagagagaga---gagaaagagGAGCAGCCAACAGTGTTTTAACTTCAAGTCCGGGTTGAATGTCACGTCACTTTTtgggtatttcagacactag---agctgaaaaattacattttagtctaaggtagtttgagttgagtttgtgtcatttgcagtggaaaggctcctgcctaTTTCCAGCATATTA-GGTTTGAGTTTTTCTTAGAAACATTTTTAGATAAGAATAAAAGGTAATGATACTGAGCCATTATTCTAAAAGTTCTGTGAAAGTCCAGAATAAATATCTTTATTCATTTACTGATTTTTTTTTTAAATTTAGGGGGTCTACTTCGCACCGGGTATTGTTCCAGGAACTGCAAA--TACAGTTATGATCTAGGAAAAATTCTAAAACCTCTGGTGTGGAGTGGTACACAT----GAAACATAAATAA--TTTCAGTAGCAAATAAATGCCATAAA-GAAAAAAAAAAGGACTATTTGCTCTTAGGGACAGTAGTTGGGGAAA----GCAGAACTTT------------------------CCTT----------GAATGATGAGGCAGCCTAACACACAATGATCAGGATTCCAAAGAAAGGATTGAACTTGTCTTGCTCAAAAAACTTAAAAAAGGg s mm3.chrUn_random 98120441 528 - 117911829 GAGACAGTGGGGAACAGGGGCGAGGAAGAGGGAGAACCAACAAT-TTTTAACTTCAGATGTTAGTTT-ATGGAGCATTACCCCTTGGCTTTCTCAGGTACAAAGATAACTAACAATGAACATTTTAGTCTGAGATAGTTTGAATTGTATCCATATCATTTGTAAAGAA------------------------ATTGTGACCTGCGTC---------------------ACGAAATATGAGAGCATGATACTAAGAGATTATTCTAACAATCTTTTGTAAGTTCAGGTT---TCTCACCACCTATTTA----------TATTAAATTCA--GGGTTTGTCT--------------TTACAAAGGTAATGAA--AATATCTGTAAAATACAAAGCAATCCTAATTCTCTAGATTGGAGTGGTACATATTAAAGAAATGCATATAA------AAATACTCAAAAGTGTTACAAAGGAAAAGGAGAAGTCTTGTCTAATAGAAGGGATGAAGAATTTGGAAAAAATAAAAAGTTTTGATTAGAG----------------CCAC----------ATGTAATAAAGCAGCTTAATCTACAGTGACCTGAATTCTAAAGAAACAAACGAGCGTGTCCTGCTCAG---------------- s rn2.chr2 112259377 554 - 246339213 GAAACCATGGGGAGCAGGGATGAGGAAGAGAGAGAACCAACAAT-TTTGAACTTCAGATGCTAGCTT-ATGGAGCATTGCCCCTTGGTTTTCTCAGGTACAAAGACAACTAACAATGCACCTTTTAGTGTGAGGTAGTTTGAAATGTATCCATATCATTTGTAAAGAAAG----------------------ATTGTGGCCTAGGTC---------------------AAGAAATATGAGAGCATGATACTAAAACATTATTCTAACA----TTTG-AAGTTCACGTT---TAGCACCATTTATTTA----------TATTAAATTCA--GAGTTTGCTT--------------TTGCAAAGGTGGTAAAATAAAATCCAT-AAGTACAAAGTAATCCTAATTCTCTACACTGGAGTGGTACATATTGAAGAAATATGTATAAAATTTTAAACACATGAAAGTGTTACAAAAGGAAAAGAGAAGTGTTATCCAATAGGAAGGATGAAGAGTTTGGAAA----AATAAGCTTTGATCAGAGCTTTTTATTAAGGACCCCACTCCTTAATCTACGTGATGAAGCAGCTTACTCTACAGTGACCTTAATTCCAAAGAGATGAATGAGGGCATCTTGCTCAG---------------- a score=13956.000000 s hg15.chr4_random 375443 188 + 1219494 ACTTTAAAAAggctggaacactgagaagagg--taaatgagggggagtgcagaaagcaa-tatcagagaatacgattttgttggttattctaatgatttttatatttattctaattgcaaaggaaaat-----gattgagaatttttccttaaggcaatgttacgatttttttctttataatttctaccagctgtt s mm3.chrUn_random 98120969 161 - 117911829 ATGTGTCAGAGGCC---------AGAAGAAGCATAAATAAGGCACAGTG--GTTGACAATTGTCAGAAGATAGAGACTT---GGTGTTCCTAATAA---------------TACTTACAAAGAGAAATAGTGAAATTGGTCATTTTT-AGTGGTACAGTGTTTC--TTTTCTTCTCTGTA---ACTGCTAGCTATT s rn2.chr2 112259931 170 - 246339213 ATGTGCCAAATGTC---------AGAAGAAGCATAAATAAGGGACAGTG--GTTGACAATTGTCAGAAGATAGAGACTT----GTTTTCCAAATAA--------TATGTTCTACTTTCAAAAGAAAATAGTGAAATTGGTCATTTTT-AGTGGTGCAGTGTTTC--TTTTCTTCTCTGTAACGACTGCTAGATATT a score=192992.000000 s hg15.chr4_random 375697 2113 + 1219494 ataaaaaataaagacattatcttg---agctaagttagcaatgaatatgaaagtaagtgaatggactagttatgtaatttgg---aaatggtacaataaaattgaccaatagttgagggtgctggaagagaggatggtcaacagtgaGAGAAAAATCAACTGTGAAAGTGATGT-----GGGAAGACTGGTGGAGACGCTTGTATTCCTTGTCTGCCCTTATATTCTTAGGATTAGAGATTCCTTCAGATTATAAAAGGAAATAGCCATAGTGATTTCAAGTTTTGCTTTTCATTCATTAAGATCTGAGTTCAGTTCCTGACTACCATTTC------------TTAGATGTATGACTCttcattaaataa---------tcacatattgctctctgttgtcaagctaggcacagaggagacaaacgtgaagt--------------agacagctatattctctgtctcctctgctggagagtagaat--ggcaagcagaaaaacctgtgtagataaaataattcgagattgtagataagtgctatacagggaataaataaggaataagggaaactgactctagatgacacgataaccacaaaagagctctctgatgaagtgacagctagaattaaagcccaatgtttggaggaaacaaatcaagcagaggctgaagggaatgttcatgggataggagagcatacaaaaaa-ggcttgtggcttgagtttcttcatctgttaaaggagaat-gataacaatctttacacaaatatttgagagtt----aatagaaagtatatgcaggagtaagtacagtTATGGAAGTATCTTCAAAATGAAATAAAGGGTATTAAAACTTTCCTAATTAGTAGAATTATTAAAACAGGAAGTTAG----TCATTGGTGTTGTGAGCGCTTGTTTAATTTTAGGACAGTGCTCCTAGCTATGAAGCCCAAGTCTCCCATATACAACTTTTGTAATTTCAGAAAAACTCCTTATTAAGGTCATAGAATCTCAGGTTTCTTTTCTGAAAAATAAGATTAGTCCTGTGg---gtcagcctcccagtcagggaagacaagggtggagataatctggaggagcaaacgaaaataatcagtacaAGGtcattatttcagctttacagatgaggaaactgtggtgaactttcatgtaattactagctgctagaattggagttcaggcccaggcaggcagtctgaatcccaaatctatggtcAGTTTTCAGGTATATAACTGCCTCTT-ATTGCCCACGTACTTTAACACTATCTTTTATTAAGTTCTCCTTGAAGGGAAATTTAAAGCTGAAAGCTATGTAAGTGATCTTATATATCTTCTTAGGAAACAA-CTTTCTCCATGCTTTAT-GTcagtagttttcaaacagagggtaatttttgccgccctcctcaccaacggacatttggcaatgagtgggggcatttttacttgtcataacttgggggtggggagagagtagcgttgctagcaccttatgtagaggccaggggtgctgctaaaaatcttgcaatactcaagacagtcccct------cacaacaaataattatccagctcaatatgtcactagtgctgagactgggaaacTGTGGGTTAAGACAATAAGGTAAATATTCTACTAATGGTGGAGAAGGTGGTGTACAAAACAAAAACAAC-GAGAACCTACAAGCTGGCTGAAGGGGACAAGAT-AAAATGACTGAGGAACATACAGAAAGAAATTTCCTAAACCACAATGGATAAGAGTTTTTACTTTCTCTAGAGG-TGTAATCTATAAGAATGGCATGA--GGGATGGCCTCTGTGAATAATCGCTTTTTGATGTAACTCATTCTTGAAGATATGATATTGCTTTTCAGAAGTTGTAATATGGAAGGAGGAAATACCTTTTACAACCTAGATATTTTGCA-AACTCACTGTTCTTATGAATAATTTTTCAAGCATTTGATGACAAGTAGAT-GGAAGATCAATGAGCCCTCTCTTCCAGGGATGAGGTCTAGAAAGTCAGAAGGTCTATATTAAATCTTACTGATATACATGCGTCAGAATAAGAGGTTGACATTTT--AATACTTGAAAATCTTGTTTCCACCCTGCAGTGGCTGTTTGTCAAATTTTAGCCCTTGAGTATTTCAAATTTCTTCTAT---------- s mm3.chr3 110785146 1942 - 160674399 ATAAAAACTTAAAATGTCTTGTTGTAAAAAAAAGGTAGAAATGATTA--AAAATAAGTTATTGGATCATATATGTAGTCAGGAAAAAACAGTAAAATAAAATGGACTAACAGTTGAGAGCAGTGGGAAAGAGGATAGTGA-----CAAAACAGAATAATCAAAGGCAGAGGTTGACACAGGGAAA--TGGAGGTAAAGC-TAGAGGCCTCAGGTGCCCTAATGTGCTCAAAGAAAAAAATTTTTTTACATTTCACAATGAATGA-CTATTACAGTTTACATATTTTTCCTTAATTCATGACTATCTGAGTGGACATTTCAAGTACCGTTTC------------TTTGACTTGTGATTCCCTATTCATTGATTCAATTCCTCACGCATCACTTTTTGTTCTCA--TCCGGCAAAAGCAAGACAACAG--------------------AGAGAGACA-ATCACCAAGGT---------GAGCATAGAGTTAGGCCAGCTAAACA-------TAGCT--------------------ACGTGTGAAATACCGCTAAGACTC----CCTTGGGGAAAGAGATGCTAGGTAGCATGTTACCCAGTTAAGTACTCTCTCACTGGGCAATTCCTATGATGAGATTCCAACACTGGGATGGAACTAACCAGGCAGAGACTGAC-AGAATGGTCA----ATGGGACAACACACAAAACCAGCCTCATAGCATGTCTTTCTTCATCTGTTCAATGGGCTTTGGTGCTAATCTTAGGACAAAGGCATAGCAGTTCAATAACAGAAA-TATTTGA-GGGACATATACAGCTTCAAAGG------CACACATATGTGGAAGGCCGTGGAACTTCCCTAATTAG----AATGTTTAAATTGGGAGTAAGAATTGCATTCCTTTTATGAGTACTCTTTTGATTCCA-GACATTGTTCCTCCCTAGGCAGCCCA--TCTCCCACATGCAAGTTTTATGACCTT----AAATTGCTCATTAAGGCTATAGAATCTCAGGTTCCTCTCCTTAAGAGTGGGATGGGTCCTGGGGTCAACCAGCCTCCCAGT-----------AGGGCAGAGACAATATGGAGGAGCTGAAGGAGATAAGCAGCACACGATCATTATCTCAGCTTCGCAGAGAAAGAAGC--AGATGCAATTCCCTGTAATTACTAACTATTGGAGTCAGTGTTTAGACC----AAGGCAGTCTGAAGCCAGCATCCATTGTTAGTGTCTTGTTCTATAGTTACCTTTTTATTGTCTGTATGTTGTAATGCCCACTTCAATTTA--------------------------------CTGGGTAGGTGA--TTGTCCATCTACACAGGAGACAG--CTTTTCTGTGCTTTATCATCAAT-GCTCTCAACTGTAGTGTGA-TTTT--------------CAAC------TTGGCGACGTGCAAGAG----TGCAACCATCAAAACT----------------------CTGC------------tagagacaagggatacagctaaacctcccatgatactc-aggtgatgctctcaaaaccaccacaaagagctatgcagctcaatctgtcattagtgctaaggctgagaaacTGTGAGTTAAA------TGGCAA--AATTTGCTAACAA-GGAAGAGGCAGCATACAGAGTCAAAACAACAAAGTACATAC-------CTGAAAGGG-CCAGATAAAAAAAACTCAAGACTATATTGAAAG-TATTTACTAAAGTACAATATAAAAGAGTTTCCACTTCCCTTGAAGGCTAGAGTCTACAAGACTGGCATAGACAAAACAGCCTCAAT-AATTACTGCTTTTCATTGAAACTCGTTCTTGGA-ATACCATATTAGTTTTCAGGAA-TGTGATACAG--AAAAAAAATGCAACTT--AATCTATATATTTTTCA-AACCCACAGTTCATAAGTATAATTGTT---ACAGTGGGTGACAGGGAGGTGGGGGGATCTATTAGCTCTCTGTC---AGGATGATGGCTCATCATTTTGAAGGCCTCCATTAAATCCTACTGATAAGCATGCCTTTGATTATGTACTTGAAAGGCCCAAGTATTATGAAATCTTGTTTCTGT-ATGCAGTGGCACTTTGTCAGAGTTTGGTAGTTGAGCAGTTGCAAG---TTCTGCGTCCCTTCAT s rn2.chr2 112269817 1927 - 246339213 AAAAAAATTTAAAATGTCTTTTT----AAGAAAG--AGCAATGATCA--AAAATGAGTCATGGGATCATATATGTAGTTAGGCTAAAACAGTAAAATAGA-TGGACTAACAGCTGTAAGTAGT---ACAAAAGGCTGCCA-----GAAAACAAAACAACCC--GACAGCGACTGACA--GGGAAG--TGAAAGCAAAGC-TATAGCCCT-AAGTGCCCTGATGTGCTCAGAGAAAAAA-TTCTTTTACATTTCAAAATGAAATA-CTATTATGGTTTACATATTTTTCCTTAAATCATGAATATCTGAGTGGACTTTTCAAGTACCATTTCGTGTATCATTTCTTTGACTTGTGATTCCCTATTCATCGATTCGATTCCTCACGCATCACTTTTTGTTGTCA--CATGACAAAACAGAGTCAGCAGTGAAGGAGACTGACTACAGTGGAGAGAGG-ATTGCCAAGCT---------GGGCATAGAGTTAGCCCAGCTAAACA-------TAGCT--------------------GCAGGTGAAATACAGCCAAG------------GAGGA--------CTAGG--GGATGGTAACCAGTAAAGTACTCTC--ACTGGGTAATTCCTATGATGAGATTCCAACATTGCGATAGAGCTAACCAGGCAGAGGTGGAC-AGAATGTTCA----ATGGGACAACA----------GCCTCATGGCATGGCTTTCTTCATCTGTTCAATGAGCGT-GGTGCTAATCTCAGGACAGAGGCATAGGAATCCAAAAACAGAAA-TATTTAC-GGATCATACGCAACTTCAAAGG------CACACATATGTGGAAGACCATGGAGCTTCCCTAATTAG----AATGTTTAAATTGGGAGTTAAAATTGCATTCCTTTTATGAGTACTAGTTTAATTCCA-GACATTGTTCCTCCCTAGGCAACCCA--TCTCCCACATGCAAGTTTTATGATCTT----AAATTGCTCATTACGGCTGTAGAATCTCAGGTTCCTCTCCTTAAAACTGGGATGGGTCCTGGGGTCAACCAGCCTCTCAGT-----------AGGGCAGAGACAATATGGAGGAGTTGAAGGAGATAATCAGCACAAGATCATTATCTCAGCTTCTCCGGGGGAGAAAC--AGATGCAATTCCCTGTAATTACTAACTATTGGAGTCAGTGTTTAGACC----AAAGCAGTCTGAAGCCAGCATCCATTGTTGGTTTCTTGTTCTATAGCTACCTTTTAGTTGTCTGTGTGCTTTAATGCCAACTTCGATTTA--------------------------------CTGGGTAGGTGA--TTATCCAGCTACACAGGAAATAGAATTTTTCTGTGCTTTATCATCAGT-GCTCTCAACTCTAATGAGATTTTT--------------CAAC------TTGGTGATGTATAAGAG----TGGAACCATCAAAACC----------------------TTGC------------tagagaccagggatgcaactaaacctcccacaatattc-aggtgctgatctgaaatccacaacaaagagctatgcagctcagtctgtcattagt-CTAAG-----GAAAC--TGAGTTAAG------AGGCAA--AGTCTACTAACAA-GGAAGAGGGAGCATACAGTCTAAAAACAACAAAGTACATAC-------CTAAAAGAC-CCAGAT-AAAAAGACCCAAGAATATATAGAAAG-TATTTACTAAAGTACAATATAAAAGAGTTTCCATTTCCCTTGAAAGCTATAGACTGCGAGACTGACATAGAGGGAATGGCCTCAATAAATTACTGCTTTTCATTGTAACTCACCCTTGGA-ATACAATATTAGTTTTCATGAA-TGCGATATGGGAAAAAGAAATGTGATTT--AACCTATAAAATTTTCACAACCCACACTTCTTAAGCATAATTTTT---GCAGTGGATGGCAAGGAGGT-AGAAGATCTATTAGGTCTTCATC---AGGATGATGGCTTGTCATTTGGAAGGCCTGTATTAAACCCTACTGATGAGCACACCTTTGATTATGTACTTGAAAGGTCC-AGTATTATAAAGTCTTGTTTCTGTCATGCAGGGGCACTTTTTCAGTGTTTGGTAATTGAACAGTTGCAAGTTCTTCTGTGTCCCTGCAT a score=1182.000000 s hg15.chr4_random 378251 12 + 1219494 GTCAGTTA------ATGG s mm3.chr3 110787396 18 - 160674399 TTTTGTTAGAAGCTGTGA s rn2.chr2 112271759 18 - 246339213 TTTTGTTAGAAGCTATGG a score=21195.000000 s hg15.chr4_random 378263 518 + 1219494 AACAACTAATGTATTCCAGA---TGTATCTCAATAAAAGACCACATACTCAAAGTAGATGTCCAT-ATATGGATGAATCCAAGTTAATGCT-ATTGAGTATGTTATTTCAAGAATGGCTAACCAGGATCTTCTGGAATTCAACAACAT-------ATTTAGT-----AGCAATCAGAATAAAGAACTGTTACCAACACATTGAACCAAACAGAATATCATTAAGTCATATTTATTTTG----AGTTTGATATAAAG----------------------------------GATCAAAAGTAATGTGGTTTTAACTAGCTTAAAATCTAGAGTCCTTGAAAGGAATGATACTACGGGTAAAGATGAACAATAGCAAACTCTAAAATAGGCTCTTCCTTCG-TAAACTATTCTATGTATGATAGGAAGGGGTCTCCTTCTTCCTTTGAGTAGAGGACATGGATTTGCCTAAGTAATAATGTCCCAGTGGGATGCTTTGAGGAAAAGACTGGGATTTCCTTACTATTATCCCACTATTCCTAATAGGTGAGATAGGTTATGC---TTTGATTGGGAAGAA---- s mm3.chr3 110787847 450 - 160674399 aTCAAC-----CATTTCAGAAATTTTATACTAGTG--------------------AGGTGACTGTGAAATGGGT-------AGTAAGAGCTGGCTGACTTTACTA----------AACTGAGCA--------------CTAACAACATCCACAGCATTTAGATTTAAACTAATCCAAAGGGAATATATTTGTGAACACATGGACTAAGACAAAATACAGTTAAATCATTCTATCTTTGATACAAGTATATCTCTAG----------------------------------TACCAAAA-TTATAGGCTCTTAAATGATTTCA---CAAGTGACTATGACAGTCATGCCACAGAAGGTAAACCTGGTC-------AGCGT-GTTATAGGTTTCTCCTTTA-TAGA-TGCTCTCTGTATCCAACATAAGGA---CTCTGCTCCTTTGAACATGGGATTTGGATTTGCCTAAGCAACCATG-ACCAGTGAGATGGCTTCTAGGAAAGGGTAGAGCTCATTTAC---------------------AAGTGGGATCTCTTACAC--GTTGGAGTGAGTAGAAAATA s rn2.chr2 112272199 491 - 246339213 aTCACT-----CATTTCATAGATTGTGTAACAGTG--------------------CGATGACAGTGAGA--GAT-------AGCAGGAGCTGGTTGACTCCACTA---------CAACTGAGCA--------------ATAGCAGCACCCATGCCATTTAGGTCTAAAATCATCCAAGGACCATATATCTTTGAACACATGAACTAAAAGAAAATATCCTCAAGTCATTCTGACTTTGACACAAGtatatatatatatatatatatatatatatatatatatatatatatTACCAAAAATTATACGCTCTTAAGTGATTTGAAGGTAAGTGTCTATGAAAGTCATGCCACAGTAGGTAAAAATTGGC-------AGCTTTAATATGGGTTTCCCCTTAAATAGA-TGCTTTCTACATACAATGTAAGAA---CTCTGCTACTTTGAACATGGGATATGGATTTGCTTCAGGAATGGCG-ACTAATGAGATGGCTTCTGGAAAAGGGTAGAGCTCATTTAC---------------------AAGTGTCATGAATTACAGTGGTTGGAGTGGATAGAAAATA a score=317150.000000 s hg15.chr4_random 378781 2753 + 1219494 GAAAGCTGTG-------------------------------------------------ACAGA-----------------GCTGTCTCCCGGGAGTGAAGCCAAAAAATACATGGGTTTGGGAGG-----GTTGTGGGCTCATTTGTTCTTGAACTGGGGAGCTGTCTCATACTGGATGAGATTCCTAATAGTTGGATTGGGAGAATT-GGACATGAAGTGATTCAAGTGCCAGTGGTCAGCACTTTCTTACTCTTTCCATGTTTAAAGAAGGGCATGGAAATCTTGTGAACATCTCACACCAGATTTAGGTGCCTAGGATCCTAACACACCTTAGACCCTTTATAGGGCATTGGCTTTTTGGTCTTAGTTTTGCCACTTACGATAGAAGAATAAGGTCTTATCTGAAACTCAAAGACAGGCAATGTGTCTCACCACAGAATCAATAAGAGGTCAGCCGAAAAGG----CAGGCAATTGAATTCTGAGAGGGAAGAGTGAGTCAGACAATGCAGGAAGAGTTGTGTGCAGCTGGTTAGCAGAAGAAGGGCTTAGAATCAAAACTAGGCTACTGGAGACAGTACAAGAAAGCT----ATTTTA-TTTTACTGGATATTCAGTGCCTTGACTCATATCTAGGATTAGTGTAAAGGGTTCTTCTGACAATAACACTGTAATGAAAGTAGCACAACTATAATGAAAATTATTTTTTGTTTGTTTTTCTCTGAAATAGAGGGAAAATAGGAATGATCAGTCATTCTGTGATGAATACAGAACATGAGAAAATCACTTCCCATCTGCTAGCTAAATAGACAAATAACCATAAATCTTTTAAATGATGAAAACAAGAAAATACAGTAAATATATCAAGAAAACTCTTTCGACATCTCCTACCAAAAACCAAAGAGGAAATTTTTGTTTAATTTTTAATGGACTGATTTTT--GGTAGTGAAATTAATGCTTA--TAACATTTTTCAAGAAAGAAAAAATATTGATAAACACAGAATTTTAAAT--TTGTTCTAATTGTACTACTCTTTAGAAAATGGGCTTTAGGGTGGGCAAAAAAATTCCTTAGCTCATGGTTGTGcagattgactatcacttatccaaaaagcttgagaccagaagtgtttcagatttgggatttcggggaaattttggaatatttgcattatacctgttgagcattcctattctgaaaatctgaaatctgaaatgctgcaatgaggatttcctttgagcatcatgtcagctctcagaaagtttcaaatttgggagcattttggatttgggtttcagattttcagatttgagatgctcaaactgTACTGATATTTGCAAACTATATTTTTATCTATT-----TTAAAGTACATTAAAAGTTTTACATGATTCATTTTTTCCCGCTTTTTTAAGAGTCAGCTTTATTGATGTTTGGTTTACATTTTTTTTTACCATTTTAAGTGCAAGGTTTTATTAGTTTTAACAAA--TATATATTGTTGTGTTTAGTTAACATTTTAATACTGGTTTGTAGAGTCTT-TGAGGAA---AAAATTGCTAATAAAAGATAAGATCCTCAATTCCCAACTTTTAAAAGTTGACACTGAGGATTGCTTGAAAATACTGAAGAGAATTTCCAAGTTGAACCTTTT-AGAGATTAA--ATATGCATATTTAGTTCTCTCATTAACCTAATGTAAAAAAAAAA-------------------------------ACACACATATATATACATACTAATAT---------TAAAAATATATTAGCACCCAAGCATAACACTTAGAAAATGATCACTATTTAT-TATACATTTTGACTTTAAAATTAAACCTTTGATAATTCCTGTGTAAATTATTACTTATTTTTATGTCAATAATTTGATGCATTAATTGTGTACATGTTCCTTGCTCTTAAAAA--GTGTATCTTATATTAACTAAATGTTGGTTAACTATTTCTCTAATATACTTCAAGTTGCCATACTAAATATTCAGTGCATGCATGTATAACTTAAAATATAAATGACTGTCATAGCTTAACAGTTTTAAGAAAAAGACACACAT-TCTTTATTAAGATTCATAAATGAT-AAAATTGATAAATTTTTCAAATGTTTTAGGTTGGTTGCAGAAAAAAATAATAATGATAATGATATGATGTCAGAATAATGCTATATATTATGGCAAACTAATAACCTCCAGGGTGTTCAACTTCCATGAAATTCATTTCATATCTCATCTATTATTGAGGATCTGTGAAAAATAGTTTACTATTTCCCTCCTGAGTTATTTGGCAATGCAGGCTAGGCTCATGAAAGCAAAGAGATTAGATATTGTCATTTTCAAAGGGTAAAATCTGTGAAAGCTCTTTTCTAATTCTAGAAATGTCTGTGTGATAAAAATCCCTTTATGCAAATAACGTGAGAGGAAC--AAAACTCTGTCA-TTTTTCTC---AGCTTTCAAAATACGTATATTATGTTCCTTTAAACTAGCACACTTATCAGAGGGGCTCTTTCTACAAATGCAGAATGGGAGATATATGCTCACATAGATGATATTTACTTCTTAAAAGTATTTACCCTTGGCGTTGCATAAAACTCTCCAGAGAAATGTTTTAATCTTTTCA-CACCTGGGAAGACCATTGCAATTT-TAAGTCCATG----TTGTATCCAGAGTTGTAGATGGTGATGATGAGTTTCACATGAAACAAAGAAATTGCTTGCAGTTTATCAGAAAATGTGTGCTCTTAGAAACTTACTTTCATATTTTCATTGATTTCCCATTGCCTATGAGTAAGACTTATTGATAGCTCAAGGCCTTCTGTGAAACGATGAAACAGTGTGCAAAACATTACTGAATGTGCATATGTGCATGAGAA s mm3.chr3 110788541 2441 - 160674399 gAATACTGCAAGAacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaGTGCATTGCTCACCCTTGGAAGTAAAGTCAAGCAACACGTGCCTTGGAGAGGCTTTTGTTGCTTTCTTGTCTTTTCTTGAGTTGGTGGCAAATCTTGCGTCG-------TTCCTAACAGTTGGGTTGGATGCACT--GATGTTTACTAGTTAAATATATATTGCTCGGAGCTCTCTGATTCTTT--AGCTTTAGAGAGAAATATGGATACTTTGTGATCATTTTAAATCACATATAGATATCTAGGACTCT-ATACTCCTTAGAACCATGACAGGGCACTGCCTCTTTGATCTCACTTTTGCCACTGGTAATGTGAGAATAAGATTTTCTCTCAGCCTCAAAGGCAAACAGAGCATCTAGCAGCAAGATCAATAAGAGGTCAGTAGAGAAGGTGACTGACTGATTAAATTTTGA-CGGGGAGAGTGGGTCAGATTGTACAAGAAGAGCCATGTGT--------------AGAGGGGCTTTTACTCAGAGCCACACTATGAACAATGGAACAAGAGGGCTATGCATTTGATTTTTTGTGGCTACTCGGTGGTTTGGCTCCTA---GTGAGTTGTGTGAAGAG---CTCTCACAATGGCAGAGTAATGGAAGCAGCATAGATATAATGGAAGTTATTTTTCTTTTAGTTCCCTCTAAAATAGAGGGAAAATAGGAGTGAGCCACCACTCTGTGATGAATATAGAGTATCAGAAAAGCATTGCCCATCTGCTAGCTAAATAGACAAATACGCATAAATCTTTCAAATGACAGAAGCAAGAAAATGTAGAATATGTA-CAAAACTATTCTTTTAAAGTTTCCTACAAGAAACCTAAGAGGAAATGCTTATTTAATTTTTAATGTGTTGACTTTTGGGGTAGGAAATTTAATGCTAAGTTAACATTTTTTAAGAGGAAAACATTATTGACAAATGGATAATTTAAATGATTTTTTCTAATTGTAGTGCTCCTTGGGGTAAATGCTTCACGGTTGGCAGA-----------------GGTTGCCTTGGTT--------------------------------------------------------------------------------------------AATTCTGGTTCCCATAGT--------------------------------------------------------------------------------------------------------------------------------------------------------CAGT-----ATAAAGTGCCTCACAGATTGTA-------------TTTACGCT---------GTCAGGATGATTGTAATGTAATTGACAGAATCTTTGGCCTCCTTACGTGCATGTTTTTACC--------CAAATCTGCATACACTTATATTCAGTTTGCATTT---TACTGGTTTTTAGAAGGTT-GGAGGTGGTTAATACTGCTAATATAAAAT----------------GACTCCTCATAGTCATCTCGCAAAACTGCCTGGAAATAATTTAGAGAAATT-TGAGTTGAATTCCTTGAGAGAATGG----ATATATATTTAGATCTCTCATTGACCTAGGGTGAAGAAA----------------------------------ACACACACATACACACATGCAGAGGCACACAGACCTTACAACACAGTATCACTCACACATAA-ATTTAGATATTG---ACTATTTAAATTTGAGGTTGGGATATAAAGTCAAGCTTTTGAAACTGTATGTATATACTATTGATT-TTTCCATA-----------------CAACTGAATACATGTTGCCCTCTGTCAAAAATTTTTTATCAAGCTTTATCTAAGTATTGGCTAACCATGTTCTTCATTTACATCAAGCTGCTATGAGGAAAATGCAA----TGCATGTAAAACTTAAAGAGTAAGTGCTTTTCCTACTTTAATAGTTTTAAGAAAAGAACACACTTTTTTTTATTAAGGTCTGCAAATGATAAAAATTGATACATTTTTC-AATATTTTAGGTTGGTTGCACATGAAAATAATAAGGATAATGATACAATGTCAGAATAATGTTATATATTATGGCAAACTAATAACCTCCAGGGTGCTCAACTTCCATGAAATTCATTTCATATCTCATCCATTATGGAGGACCTGTGAAAAATAGTTTACTCTTCCCCTTGTGAGCTATTTGGTGATGCAGGCGAGCCTCATGAAATCAGAGAGATTAGATACTGTCATTTTGAAAGGATAAAATCTTTGAAAGTCCCTTCCTAACTCTC-AAATGTCTGGGTAATAAAAATTTCTTTATGCAAATAATGTAGGAGGAAC-AAAAACCCAGTCA-TTTTTCCCCATAGCTTTCAAAACACATATATTCTTTTCCTTTAACATG--CTACTTAGCCCAGGGGCTTTTTCTGCAGATGCACAAT----------CACTCA-------AAGACTAACTACTCAAAAGC-----TCCTGTGTG-----------------AAGAAGGGCGTTAACTCTTTCATTACAAGGGAACACAGGAG-AATTT-CTATCCTCTGCTGCCTGTTCCTTGAGCTCTGGTGCAT-ATGGCTACATTCTTAC-CAACACAG-ACTTGTTTCCTACTCATCACAAAGGATGGGCTTTGGGAA----GTATTCTGATTTTCATTGATTTTCCGATGCTTACAAATGGTGTGCTTTCATGGTTCAGGACCTCCTTTAAAA-ATCATAAAAGTACCCACAGAAACTCTGGGTGTGCATATGTACCTGTGAA s rn2.chr2 112272942 2470 - 246339213 gAATACTGCAAGAacacacacacacacacacacacacacacacacacacaggcacacacacaca----------GTGTATGGCTCACCCTTGGAAGTAAAGTCAAGCAGTACATGCCATGGAGAAGCTT--ATTGCCTTCTTATCTGTTCTTGAATTGGTGAGCAATCTTGTATTG-------TTCCTAATAGTTGAATTAGATGCATTTGGATGTTTACTAATTAAAGTGATATTGCTCAGAGATCTCTTATTCTTT--AGCTTTAGAGAGAAATAAGGGTATTTTGTGATCATTTTAAATCACATATAGATATCTAGGAGTCT-ATCCTCCTTAGAACCATGACAGGGCACTGCCTCTTTGATCTCAGTTTTGCCACTGGTAATGTGAGAATAAGATTTTCTCTCAACCTCAAAGGCAAACAGAGCATCTAGCAGCAAGATCAATAAGAGGTCAGTAGAAAAGGTGACTGGCTGATTAAATTCTGA-AGGGGAGAGTGGGTCGGATTGTATGAGAAGAGCCGTGTGT--------------AGAGGGGCTTTTACTCAGAGGCACACTAGGAACAATGGAACGAGAGGGCCATGCATTTGA-TTTCTGTGGCTACTCGGTGCTTCGGCTCCTA---GTGAGTTGTGTGAAGGG---CTCTGCCAGTGGCATGATGATGGAAGCAGAATAGACATAATGGAAGTTATTTTTCTTTTAGTTCCCTCTAAAATACAGGGAAGATAGGAATGAGCCATCACTCTGTGATGAATATAGAATGTCAGAAAACCATTTCCCATCTGCTAGCTAAATAGACAAATAAGCATAAATTTTTCAAATGTCAGGAGCAAGAAAATGTAGTACATGTA-TAAAACTATTCCTTTAACGTTTCCTACAGGAAACCTAAGAGGAAATGTCTATTTAATTTTTAATGTGTTGACTTTTGGGGTAGGAAATTTAATGCTAAGTTAACATTTTTTAAGAGGAAAGCATTATTGACAAATGGATAATTTTAATG--TTTTTCTAATTGTAATGCCCCTTGGGGGAAATGTTTCATGGTTGGCAGA-----------------GGTTTCCTTGGTT--------------------------------------------------------------------------------------------CATTCTGGTTCCCAGAGT-----------------------------------------------------------------------------------------------------------------------------------------------ATTGCTACGTACTTTTTGATAAAGTGCTTTGCAGATTGTA-------------TTTACATT---------ATCAGGATGATTGGAATTTAATTCACAAAATATTTAGCCTCCTTAAGTGCATATTTTTACT--------CAGATCTACATACAATTACATTCAATTTGCATTT---TACTGGGTTTTAGACTCTTGGGAGGTGGTCAATACTGCTAATAGAAGAT----------------GACTCCTCATAGTCATCTCTCAAAACTGCTTGGAAATAATTTAGGGAAATT-TGAGTTGACTCTCTTGAGAGAATGATTATATATACATTTAGATCTCTCATTGTCCTAAGGTAAAGAAAATacacacacacacacacacacacacacacacacacacacacacacacacatgcagagacacacagacaTTAAAACATAGTCTCATTTTCACATAA-ATTCAGATAAAG---GCTATTTGTATTTGAGGTTGGACTATAAAGTCAAGCTTTTGAAACTGCATGTACATACTATTGAAT-TTTTCATA-----------------CAACTGAATATCTATTGCCCTCTATCAAAAA-TTTTTATCATGTTTTATCCAAGTATTGGCT----ATTTTCTTCATTTACATCAAACTGCTATGATGAAAATTCAG----TGCCTGTAAAACTTAAAGAGTAAGTGCTTTTCCTAGTTTAATAGTTTTAAGAAAAGAACACA----TTTTTATTAAGGTCTGCAAATGAT-AAAATTGATACGTATTTC-AATATTTTAGGTTGGTTGCACATGAAAATAATAAGGATGATGATACGATGTCAGAATAATATTATATATTATGGCAAACTAATAACCTCCAGGGTGCTCAACTTCCATGAAATTCATTTCATATCTCATCCATTATGGAGGACCTGTGAAAAATAGTTTACTCTTCCCCTTGTGAGCTATTTGGCGATGCAGGCAAACCTCCTGAAATCAGAGAGATTAGATACTGTCATTTTGAAAGGATAAAATCTTTGAAAGACCCTTCCTAACTTTCAAAATGTCTGGGCAATAAAAATTTCTTTATGCAAATAATGTAGGAGGAACAAAAAACCCAGTCATTTTTTCCCCATAGCTTTCAAAACACATATATTCTTTTCCTTTAACATG--CCACTTAGCCCAGGGGCTTTTCCTGCAGATGCACAAT----------CACTCA-------AAGACTAACTACTCAAAAGC-----TCCTTTGTG-----------------AAGAAGGGAGTTAACTCTTCCA-TACAAGGGAACACAGGAG-AATTTCCCGTCCTCTGCTGCCTGTTTCTAGAGCTCTGGTGGATAATGACTGCATCTTTAC-TAACACAG-ACTGGTTTCTTATTCATCATAAAAGATATGCTTTGGGAA----GCATTCTGATTTTCATTGATTTCCCGGTGCTTACAAA---TGTGCTTTCACGGCTCAGAACCTTCTTTAAAG-GTTATAAAAGCACCCAGAGAACCTCTGGGTGTG--TGCGCTCCTGTGAG a score=74971.000000 s hg15.chr4_random 381797 1478 + 1219494 AAAAGTCTGTGATACTCCTAAAAAGAATTAAACCTTTTTGCTCCCATAGGCTCTTTTTCCAACCATGGCACTAATCGACACGGGTGTTTTGTGTTACTCTTTTGTGCACAGCTCATTATCTTGGATATAGTGAATGTTCTATGAAGCCTTGTTTATTT------------TTTGTCTTCAAAAATACCTAATTCAGAGCAATGCACAGGATGTCACAGGTATTGATTCAAATCAAATTAGGCTCTCAATTTATTCCAAACTA-----TCTACTCTCCATGAATTCCATGATGATATAAGGTGAGGAGAAAAGAAGCAAAATAATGACCATCTAATCTTAGCAACTTTTGTTTTTCAAGCTTTCTCAATTT-TTTCTGTCTTCATCTA-GCAATTTTTTTTCTTTCCTCTGCTCCTTTTTTCCTTGGGCAATGGTACTGGGGTATAGGCTTTGCTAAATTTCATTACTTTTTCCTATCCTTTGCTATCCTGTATGGAACAACACAATAACTTATTTCAT-GGAACTTAATGGCCA-------CTTTTTTTTCATTGCTTGAATTCAAAATGTAACTATAAGATTGAACATGTTGTAATTTGGTTTCATACATTTTCTTTCAGAATTTTGCCAGATGTAAAAATGCCtatatgtatatatgtatttatatacatatatgtgt---atttatacatgagtatatatgtatataggtatttatatacatatatgtgtgtatttacacatatgagtatatatgtat-atatgtatttatat----------------------------------------------------------------acatatatg-tgtatttatgcatatgagcatat-atatatataATGTGTGTGTATACACACACACACAAAGAAAGAGAGAGAGGTTCTGACCCATTTGTGGCTTTCCTTGTCA----CTTTCATGGCCA--CAAAGGAACAAAAAAACTCTTCCTTTCAA---------CTAT---------GTATTTTAAATGTATTATCTCTATATTATTAGGCTTTTCTTTTTCTCCAGATTTCAAGGCTATTCTGCAAAAGGTACAGACTCCTAAGTCGACAGTTG--TTCACCTATCCCCACCAACGCAAGTCTCTCAGAACCAGCTCCTTCTCA----AGTCCTCAGGGAGGACTTCCTCCTTCTC---------------------------------------------CACACCTTCT--------------------------------------------------------------------TCCACACCCCTCATCTCGTTTCTGACAGCTCAAAGTTACTTTCTCTACCATCCTCTTCATTGTAGCCTGCTCCCTCTC--TCTCATAGGAAAGTAGCCTCAGACAT-TTCATAGAATGATAAACTTCCTTGGCATAACTAATA----------CTTG------CCTCTCCCTTAAAATTGGTGATTTTTTTACAGATCACTTGAGTCTAGTACCCTAATTCTCTGTGTCTCAGGAA-TATTTTCATTAAAAGGTAGTGTTGGTATTCTCCTACATTGCACTGACACTTTTACATCATTAGTCTTCCACTTGAGACAGATCATTTCTTCTTTGatatttactttatttgattatattataaattattatGT----------------------------------TTTCTCTTTTCATTGTT--TCTCCCT------------------------------ACAAGTATTCCAATACTCC s mm3.chr3 110792510 1458 - 160674399 AAATGTTTGTG--GTCTCTAAGGGGAATTAAACCCTTTC-CTTTCACTATTATATTTTCCAGCTAAGTCCCAA-TCAACACTGGCTACATGAGTGA-----------ATATGGTGTTTTCCTCAATGTACTGCAT-CTTTCTGAAGCCTG--------------------TTTGCAT-----------------------ATGGTCA-GCTTTCACAGA----AATTCAAATACAACTGGGCTTCCAGTTTAGGTTAAAATACCATCTCTTCTTTGCACACAGTCCATG--------AAGTGAGTAG----------GGATAAGTACCTTGTACACTGAGC----TGTCTTTAGCAAACTTTTTCAGTCT-TTGTTGTCTGTCTTTATTCAATTGCTTTTCCCT-----------------------------------------------GTTAGCTCCCTTTATTCTTCCT--GCCTATTCTACCCTGCATGGAACAATACAGCAACTTACTTCATTCAAATTTAATGACAATCTCTTTTTTTTTTGTCATTCCTTGAATTCATGTGCCAAGGACAG---------------AATTTGATTTTGTGGATTTTCTTTTAAAATCTC----------------CATACATGTAAAAATGTAATAAGAAAACCACAGAGGTCCCATTCACACACTAATGACTTTCT-------CA-TCACATTTACAGAC-TGAGGATTGACACCCAGGGCCATCCTTTAGC-------------------------------------------------------------------------------CCCTCTCTGCTATCTTTGTGCTTCTGGGATTTT-CTCTCTAGAGTTT-------TAAAGGCTCCTGTGAAGAA-----------TCTCTATACTCCTAAGTCAGTCACTGTCCTCCCCTTTCTAGGTCAGTCACTGT----------CTTCATTTTTCAAGGTCAGTCGCTATGTCCCCTTTCTAGGTCAGTCATATCTTCCCT---TTTCTAGGTCAGTCAGTGTCCTCTCCTTTCTAGGTCAGT---CAAAATCCTCCTTTTTCTAGGGCGGTCATTGGCCTCCCTTTTCAGTAATGACTC------TACAGAACAAGCTGTTTCTCATCCCATCACTCTGTGTGAGCTGGCTCCTacacacacacacacacagacacacccatacacacacacacatacacacacacacacactcatacacacaca------------------cacacaggcacacacacatgcacgcgccatatacatcacacacacCTCTTATCTACTTTCTAACCTCTTGAGGTTGTTTTTGCTACTA--CTCTGCATTTTATTTTAGTCTTACTCAATCTCATAGAGAAATTGCTTCAAACATTTTCCTAGAATTGACCATGAACTTTAAATAATTCATAATTTTTCTTCCTTGCTCCCTCCCCTCCTTCTCTACTA-------TTTTTCAGATCTCTTGAGCTTGGGTATTTGATTCTTCATGTCTCTGGTA-TATTTGTATTGGTATATATTCTTTGTATTCTTT-----------------TTTTCATTATTAATGTCCTGACTCTCTTACGCT--CCCATTTTTGA---TTGGCTCATTTGATTATATTATAAATCACTATGTTCTTGTTTTCTCCAAATCTCcccactttctttcctttcccccttcactgttactctcccttcctccctccttccttcttcctcattctctccatttcttcctccacccc s rn2.chr2 112276157 1545 - 246339213 AGATGTTAAT----TCCCTAAGAGGAATTAAATTCTTCC-CTCACATTATTCTATTATTCATCTATGTCCCAAATCAACAGTGGCTAAGTGAGTGA-----------ACATGGCGTCTTCCTCAATGTGTGGCTT-CTAGCTGAGGCCTGATTTGTATTGGGTCCTTGACCTTGCAT-----------------------ATGGTCA-GCTTTTACAGA----AAGTTAA-TCTAACTGGGCTTCCAGTTTAGATTAAAACA-----TCCTCTCTGCACACAGTTCACA--------AAGTGAGCAA----------GGATAAGTACCTTGTACTCTGAGC----TGTCTTTATCAAGCTTTCTCACTCCCTTTTTGTCTGCCTTTATTCAATTGCCTTTTCTTTTTTCTGTCTTTCTGTTTTACCACATTG------------------TGGTAGTTCTTTTTACTTTTCCT--GCCTTTTCTATCCTCCATGGAGTGATACAGCAACTT----TATCACAATCTAATGACAGAAT----TTTTTTTGTCATTCCTGTAATTCAAGAGTCAAGGACAG---------------AATTTGGTTTTATGAATTTTCTTTAAAAATCCC----------------CATACATGTAAAAATGTAGTAAGAAAATCATAGAGTTCCTGTTCACCCAATTGTGACTTTCT-------TGGTCACATTCACAGAT-TGAAGATTGACACTAAGGGCCATcctttcactatgtgtgcctctctctctctctctctctctctctctctctctctctctctctctctccctccctccctccccccccctctctctctgctctcattgtgcttctggaatttttctctccagagttt-------tgaagactactgtgaggaa-----------tttccatactcctaagacagtcattgtcctcctctttctaggtcagtCACTGT----------CTTTCCTTTTCAAGGTCAGTCACCAT------------------------CCACTCT---TTTAAAGGTCAGTCACTGTC-TCCCCTATCTAGGACAGT---AGTCATCATCCCCTTTTTAGGTGAGTCATTGGCTTCCCTTTTTAGTAATAACT--------ACAGAACAAGCTCTTTCTTATCCCATCACTCTGTGTGGGCTAGCTCCTacatacacacacacacacacagac----acacagacacacacacacacacacactcactcagaaacatacaaaaatgcaagcatatatgcacacacacacacacacatgcacgcacca---------catacacCTCTTATCTACTTTCTAATCACTTGAGGTTGTTTTTGCTACTA--CTATGCATTTTATTTTAGTCTTACCCAATCTCATAGAGAAATTGCTTCAAACATCTTTATAGAATGAACCATGAACTTTATATAATTTGTAATTTTTCTTTCTTGTTCCCTCCCCTCCTTTATTA------------TTTCAGAGCTCTTGAGCTTAGGATCTTAATCCTCCATGTCTCTGCTAATATTTTTATTGGTATATCATCTTTGAATTATTC-----------------TTT-CATTACTAATTTCCTGACTCTGTTAAGCC--CCCTTTTTCGA---TCATCTCATTTGattatattataaatcaatatattattattctctctatatctccctggtttctttcctttctcccctcactgtt--tctttctccctccctcacttcttcttccttcttctcccCATTTCttcatcaatccc a score=29012.000000 s hg15.chr4_random 383275 322 + 1219494 CCATGATTCATGAAATCTTATGTACACCGTACCTTTGATTCTTTTCTAACCAAACTTCTTCCATCAC--CGTACTTGATTTTGTCTACATGGAGGTCCTCAAGACAATAACTGGAAACTTCCTTGACTTTCATTAATTTCTAGCCCACTTTAATAACCCAGTCCTTTCCAACACTAAGCTTC------------------TATAGTCAGAACACCTACCATAAACTATTATTAAGATCGTGACCATTTTACTAAG---TCATC-ACATTTGTTAACTGGGAATATGAATACTTGCTCTGCTC--------------------AAATTT---TAGTATT-TGTGGAAGGGTCAAAACA-------------------------CATAATATATGTA s mm3.chr3 110794147 378 - 160674399 CCATCCTTTTTGGAATCTTTGGTACACAGAC---------CTTTTCTAATCAAACTCTTTCCATTACCACATGTATGCCCATTTCTGGAGTCAAGACCACCAGAAAATAACT-CAAATTTCTCTGCTATCCACTAG-----AATCTCTATTAATAATCCAGTCTCATCTTACTTTATGATTCCTAGAATCATAAACCTATCATAACTATATCATCTATCATAAACTATGAAGAAGGATCTGGCCACTTCTCTAAAGACTGATTGACATTTATTATGTGAGGGTATAAATTCTCCCTCTACCT-TATATGTTTGTGTGTGCCTAAATTTGTATAGTTTTATGTA-ATACATATATACAAATGTATATATGTCTGATGTAATCACATATTACATGTG s rn2.chr2 112277884 343 - 246339213 CCATCCTTCTTGAACTCTTTGATACACAGAA---------CTTTTCTAATCAGGCTCCTCCCAATCCCCCATGTATATCCATTTCTGGTTTCAAGTCCACCAGAAAATAACT-CATATTTCTCGGCTATCCACTAG-----AAC----ATTAATAATCTAGTCTCTTCTTACTTTATGATTCCTAGAATCATAAACCTATCATAACTATACCACCTATCATAAACTATGAAGAAGGATTTGGCCAGTTCTCTGAAGACTGATTGACATTTATTAAGTGAGGTTATAAATTCCCCCTCTACCTGTATATGTTTGTGTGTGCATAAGTTTGTATAGTTTtatatacatacatatataca------------------------------tacat--- a score=24599.000000 s hg15.chr4_random 383597 357 + 1219494 AAAATGTCTTAGG-------------------------------------------------CATCATCAAATCTTCATGAATCTAAAGTAATGTGATTTTGAAAACTTCAAAATCTGTTAGTCCAGTGTTCATCATTATGGAAGTATAAGATTTTAGGTATTCCACGGAGGGACTTTGATTTTTATTTCAATGGTTGTGAAATTTACTTTTTGAATTTACAAACTATACATTTCTTTAATGTAAAAATTAAAGATCTAATATGAAAATAATGGTGTTCCAGTATTGAAATGACACTGTCTGAGAAAATTTGGCAAACTCAGAGAATTCTGAAGCTCAAAATTCCAAACCACAAAATCACTTTGACAGTCTTTCTTTTACCTGAGAAAGGAGACACAACCTTTCAC s mm3.chr3 110795277 322 - 160674399 AATATGTTTTAAGTGCTTAGAGGATGTTCAAACTTCACACTACGTAAGGAAATAATTTTGGACACTGTAAAATCTTTGTGAGTGTACTGTAATATGTCTTTGAAAGCT---AACTTTCTTTGTACG--ATTGCTGATTAATGAAAAACATGGTATGAA----CCCATGAAACAGTTTTGATTTTTATTTCAGTAGTTGTGAAATGTGTTTGGTGAATT---CCTCAAGATATTCCTCTTATTT-AAAATAAGAGGTCTAATTTAAAAGTTAAGTTTCCCCAGTAGGGAAAAGA------TTGAGAAAAT---------TCAGAATATTCTGAATAATGAA--------------------------------------------------------AATCTTTGAC s rn2.chr2 112278569 289 - 246339213 AATATATTTTAAGGGCTTAGAGGATGTTCAAATTTCACACTATGTGGGAAAGTA-CTTTGCACACTGTAAAATCTTCATGAGTATAATGTAGTGTGTCTTTGAAA----------------------------------------AGTATGATATAAA----CCCATGGAAGAGTTTTGATTTTTATTTCGGCAGTTGTGAAATGTGCTTGTTGAGTTTAACTTCAAGATATTCCTCTCATTT-AAAATAAGAGGTCTAATTTAAAAGTTAGATTTCCCTAGTAGGGAAAAGA------TTGAGAAAAT---------TCAGAGAATTCTGAAAAATAAA--------------------------------------------------------AATCTTTGAC a score=67970.000000 s hg15.chr4_random 383970 735 + 1219494 ATCACAAAAATCATACCTAATTTTCTCTTGGCTGGTTATAAAATCCAAATTTAACGTGGTTAGAAGTGGGAAAAAATGCAGTTAGAGGAATAAAGGATGTGGTTGTTTTCTTCAACTATAGAAATATTCTTCCTCATGTTTTCAGAAATATGGTACAAATACATTTATTATTTTattcatttatttaacaaaatatattcaccattccttgtgggatgggcatgtactagttgctagagataaaattatatgaataaccattaattattatagcctttttgaaacttcgaatctaatgagaaagaaaaaatcaattaatcacaaaacatatgaaaacccacaattttgacaaaagctaaataggagaac-ctatgataggataatttgacttgcttagggagat-ccgagaagatttccttgagaaagcattctccaactaaggtgtaaaagga-----taatcattgactagatatagagaggagaaaaatgtaccaagcagagctagtaagtgcaaagaccctgtggcaaga-----gatcttaga---taatacacaggattgaatgacatttagtgttcttacaaaagagagacggaagggaagcaaaa---taagagaagaactaggagttaaccaaggtatggatcatgAAAGGTCTTATAAAATTCCACGCAGAGGGAAATTGATATAATCAT--TATCttattttttattttaaaa----ttatg--tattatttttgagtatgtata---------------tatat s mm3.chr3 110795713 689 - 160674399 ATCATAAGAGCCATATCTAATGTTCACTTTTCTGGTTATAAGATCTAAGTTAAGTATTGTTAGAAG-GGAGAAAACCATAGTGAGGAGATGAAGG----------------------ATAAGAAAACGCTACTTTATGCTTAGA-AAACATCAGGTAAGTGGAATTAGTCATTCATTCATTCATTTAATAAGATATATCTAGTATCCAGTGAGGGTTGGCTATGTGATAATTGTGAGAAAGAAAATACTATGAATGATAATTATTGATTATCTCCTTCTCAAGTCTTAGAAT---ATGAATAAGAAA---------GTTCA------ATATTAAAATTCACTGTTTTGCTAAGATCTACATAACAGAATACTACAGTGAAATAATTGGCCCTGGTTAGGAGAATACTGAAAAAA--CAATGGACAAAGCAGTATTT--CCATGGTATATAAAGACTAAGTAATGATTTGCTAGATAT-AAGAGGAGATAGA----------AGAG---------ACACACCACTGATCACACAAT----GATCATACACAGCAGTACACAGGACTTA--------------TTTTGACAAAGTGGGGAGGAGGGGAAGCCAGAATCTGATGGGAGAAGAAGGGGATAGCTGAGGCATAAATTACACAGAGGATGATAAAATCCTATG-TGAGGG-ATCTGATTTCATTATACTATTTTAAATTTTCATTTAAAACTTTTTATGT-TTTTATCACTGAGTGTGCATAGTACTGGCATTGTTTTATGT s rn2.chr2 112278906 687 - 246339213 ATCTTAAGAGCCATATCTAATCTTCACTTTTCTAGTTATAAGATCTAAGTTAAGTATTGTTAGAAG-GGAGAAAACCATAGTAAGGGGATTATGG----------------------ACAAGAAAATGCTACTTTATGTTTTGA-AAATATCAGATAAATAGAATTAGGTATTCATTCATTTATTTAACAAAATGTATCCAGTATCCAGTGTAGACTGGATATGTGATAACTGTGAGAAATTAAATAATATGCATGATCATTATTGATTATAT-CTTCTTGAGTCTTAGAAT---ATGAAGAAGAAA---------AGTCA------GTATTAAAATTCAATATTGTGACAAGATGTACGTGATAGAATACTACCATGAAATAATTGGCCCTGGTTAAGAGAATAACGAAAA-----ATGGGACAAAGCAATATGT--CCATGACATATAAAGACTAAGTGATTATTCACTAGACATAAAGAGGAGATAAA----------AGAG---------ACACAGACCTGATCACATAATAAAGGGCCATGCAATGCAGTACACAGGACTTA--------------TTTTGCCAAGGAGGTGCTGAGAGAAAACCAGAAGCTGATGGGAGAAGAATGGATTAGCCAATGTATTAATTATACAATAGATGATAAAATCCTACACTGAGGG-ATCTTACTTAATTATACCATTTTAAATTTTCACTTAAAA-----TGTGTATACTATCACTGAGTATGTATAATATTGGTATTGTTTTATAT a score=2562.000000 s hg15.chr4_random 384738 40 + 1219494 ----------CTTATTTTCCTCTACTACAatttatattagtgatgtaact s mm3.chr3 110796512 40 - 160674399 GGGAAAGAAGCTTACTTTCTTCTGTCAAATTTAATGATAT---------- s rn2.chr2 112279594 40 - 246339213 GGGAAAGTGACTTAGCTTCTTCTGTCAAAGTTAATGATAT---------- a score=9937.000000 s hg15.chr4_random 385078 115 + 1219494 aaatcttctc-cttttaaaacttttaagtgaaaatactaagtcagtttgaagaaaaaat---aatttagtaaataatgatataggtgatgctcagatatgcaaaaacccatataggtgt s mm3.chr3 110796552 116 - 160674399 AAATTTTCCCTTTTTTATAATTTTAAAGTGAAATTT-TGAATTCACATAAATAAAGACTTTCATTTTTACTAAGGATAATAAAAGTGGTACGAAGATATACTAAAAACTA--CTGGTGC s rn2.chr2 112279634 112 - 246339213 AAATTTTCC--TTTTTATGATTTCAAAGTGAAATTG-TGAGCCCACATAAA----GATTTTCTTTTTGACTAAAAATAATAGAAGTAGTACTCAGACGTACTAAAAATTATACTGGTGC a score=32815.000000 s hg15.chr4_random 385193 523 + 1219494 tacaagaatgactaaagtgtgtgaagcactgCTTTAGTCTAATACATGAATTTTTTGAATGAAAGAATTGAGACTTTTCAGA------GATTGCTTATTATTGTTTGGTATTATAATACATCAAATTTGTTGAAGGAAAATGAAATGA---------TAACAGTAAAGCTGACATCATTTTTAAATATTT-TGTGATATTTGTAAATAGAAATTCTGTATTTTCAGGAACCAATTTTGTCTT---ATATGAGGTATCAGACCAAATACTGGTCCATTTATGTTGTTACAGACACTCTG---TGACATAACACGTATATTCCTATGGAAAGTTTTGAATGGGTTCTAGACTGAGAGTCCTGGCTATGGCAAAACTAAAGCATAAATCAGACCATT-AAGTATGCTACTTCTAGGAGCTGAAAGTGCTCACAGAA-TCTAGACTTTTTACAGCA-ATACTGGTTTGGCATAAAATCTTTCAGGCTCATTAAAGATAATCCAGGTAAAGGAAATTAAAATATTGAGAAAATTCTTCTCAAAAT-----------------------TTAACCCT s mm3.chr3 110797312 510 - 160674399 TAAATAAATAACTGAGGTCCATGTAATAAATCTT-----TCATGTATAAATGTTCTAATTCAAGGAATTGAGATTCTTCAGACATAGAAATAAAATTTAACTTTCT----TTATAAATTATAAGATTTGGT---AGAAATTGAAATAGTAATAATAGTAACAGTAATGTTGACATGCATTTAAAATGTCTGTAGGCCATCGCTAAGCAGAACTTCTGTGTTGTCAGAAGATAATGCTGGGATGCAGCATG-GATACACAAGAAGACAGTAGCCCTGTTGTGTTATCTTGAGAACAATTTTATGGTATGATATATA----GATCTCAAAGTATTTTGATGAATTCTAATTGGAAAGTGCT-----------------------CATTTAATTGTT--AATATGCAACTGTCTAATGATGAAAGTGTTCACTGACTTCTATAC--ATGGCAGCA-TTCTGGGCTTTGCACAG----TGTGTGAGTAACTAAACAAAGTTCAGG------------GAAGTTTTAGAAAATTCATCTAGAAATGCATTATCTCCTCTATGTATTGCTGGACTCT s rn2.chr2 112280418 487 - 246339213 ---TAAAATAACTAAAGTCTATGTAATATTTCTT-----TAATGTATGAAAGTTTTAATTCAAGAAATTGAGATT-TTCAGACATAG-GATTAATTTTTACATTCT----TTATAA---ATAATATTTGAT---AGAAAATGAAATAACAATAATAGTAAGAATAATGTTGCCATCTGTTTAAAATATCTGTAGGCCGTCTCTAAATGGAACTTCTGTGTTATCAGAAGATAATTGTGCGTTGCAACGTGAGATACAGGGAAAGGCAGTGGCCCTGTTGTGTTCTCTGGAGAACAATT---TGGCATGATGGATACATTAATCTCAAAGTATTTGTGTGAAATCTAAATGGAAAGTGTT-----------------------AGTTTTATTGTTTAAGTGTGCAAC----------------TGTTCATTGACTTCTAGAC--TTCGAAGCATTTCTGGGCTTCCAACAA----TGTCAGAG----TAAACAATGTTCAGG------------AAGGTTTTGGAAAATTCCTCTAGAAATGCACTATCTCCTCTATGTATTGCTGGACTCT a score=100331.000000 s hg15.chr4_random 385721 1119 + 1219494 TTGT---ATTCTCTAAAAGT------------------GTATTTTTAAAAACTAGAATTTAGATTATTCATGCTTT----------TGGtatcacttgctg--agcggctgactaggtgccaggaaatgtgctaaattctacaaacttattatc-----------tcaccta------------------------atgcaacaaactgtaatgttaagatcttattagcc--ctatgtaaaaaataaaatc--attgagaattagtaaatatcagtaatttggccaacggtgcaagaccagtatgtgccaatgctagaaatgggaactaaacccaagaaaatcta---------attccaaaatgtctgctgttAATCACCGTAAGATTTCTCTCCTCTCTTTGTCTCTCTCTCTAGcacacacactcacatttccatacactcatatgcacacacaca------------------------catatataaacatgtataaatatattcacCTAGGCATTTATAAAATACAAATATCTGGAAATGACATAA--------------------------ACTAATTTCTTGTAAATTCATGACCTTGGATGATTAAATGGAAACCTTAAAGATGGAGCTTGATTGATCATGAATGTGCTTCAGCTATCCTTTGCCAT-TCACTCCCTTGTATTCCATTTACTCTGGGATCTACTTCCCACCTATTAATTATACAGTATCAAATGTTGTATTTCTACCTGAACAAAACATGAACATGGGCACCAGCAGCCTGCACATTACTTGTTAGTATATAAATCAATAAGAGTTTTTAAATTCCTAG-TGCCTTCAGGTTGTATGTCAGATTCAGGAA-GGTCAGTTGCCAGAAAGCCACATTGCTTGGAACAATTTCTGAATTACTGGCACTAGATATTGCCATATTGATTTATTGATTAAAACAACAATAATCTACAGGCTTAAGTGGCAAATGAAGCAAGTGAGTGATT------ATTTGTGGTATTCATTGTGTCTGTATATTTTTGAAATGTAAAATTATTACCATTCACTTAACTTATTTTTATAAAAATCATCTTGTAGGGTACTTCTCTGAAAAATCCTAAGGTTTAAAGTGATGCTTTTTCACTGAATCAATTTTTTTTAatgaggattctttaatcaaa-ttagctacaatatcattatcacatctttaaaattccttaaaataaata--tttcctaattgtttatct-tttattaagaat s mm3.chr3 110798509 1064 - 160674399 tCGCTGGACTCTTTCAATATTACTCTTGTTA-------ACGATTTTAAAAGTA----TTGAGATTATTCATGTTATCTTACTGGGGTGATATCACTTGCTATTAATAGCT-ATGAAGTATCAA-----GTGCTTATTTCTCCAAAATCATTGTATCATAGATTTATCACCTA--ATAGCACTCAATGACCTAGTAAATCCAACATACTG---GGTTAGGATTCAATTTTCCT-CTGTTTTAGAGAAAAAAAAAATTTGGGAATCAATAAA-ATCATTAATTCAGCCG--TGTCTAAGCCTCATAAGTATCACGTGGGAAAATGAGAATCAACTCCATTAAAATATA---------ATACAGTCTTGT--GTTGT----------------------CTATCTCTGCTTAACACCACCACTACCacaaatacactctcacacacacatatacacacatgtacagtatcacacagacatatttatgcatacataaatatatataaacatattcaCCAAGGCATTTTTTCAGTATAAATAACTAGAACAATTACAC--------------------------AATTATATCTTATGAAATAGTGACATTGGATGACACAATTAAAGCC-AAAAGATGAAGTTTAATTAATAACAATTTTGCTTCATCTGGCCTAACCCATGTCACTCTGCTGCATTTC--TTACTCTAGAATATATTTCCCAC--ATTAAGTACATGCTACCAAACATT-TATGACTTCCTGACCAAAACCCAAACA-AGCCAGTAGCAGCCTGGAAACCTCTTGTTAGACTATAAGTCAATAAAAGATTATAAATCCCTAGGAACTCTGAGGTTGCATGCCAGGTTCAGAAAGGGCCACTTGCCAGAAAGCCACACTGCTTGGAACAATTTCTGAATTACTGGCACTAGATATTGCTGTATTGATTTATTGACAAAAACAATAGCAATC--AAAGCTTAAGTAGCAACCAAAATAAGCCAGTGATTTGGGAAGGGGGTGTTGCTATTTGTATAGGTAAGTTCTTAAAAAATA----TATCATCATTCA-----------------------------------------------------------------------------------------------------ATTCTTTAATCAAACTTGGTAGCAATACTACTATCACACGTTAGCAAATCTTAATAATATAAAACATTCTCAATTGTTTATTTATTTATTTAAACT s rn2.chr2 112280893 1052 - 246339213 TTGCTGGACTCTTTCAATATTACTCCGGATACTCTCGGAAAATTTGAAAAGCTAG-TTTGAAATTATTGTTGCTATCTTACTGA--TGGCATCACTTACTAATAATAGCTGATCAGGTATCAA-----GTGCTTATTTCTGCAAAGTCATTGTCTCATAGATTTATCATCTACTACAGCATTCTGTGACTCAGTAAACCCAACATATTA---AATTAGACTTCTGTTTTCTTTCTGTTTTAAAGAAAATGTT--TTTGAGAATCAGTGAA-ATCACTAATTGTGCCA--TATCTAAG-------------------GAAAATGGGAATCAACTCCAGTAAAATTTATCATCTCCAATacagacacac------------------------------------------acacacacacacacacacacacacactcaaacacacacacacacacacacaTAGTTTCACACAGTCATATTTATGTATACGTCCATAGGTATAAATGCATTCACCAAGGCATTTTCTCAGTATAAATAATGAGAAATATTGAAATAATTTGAAATATTGAAATAATGAGAAATTATATCTTATGGAACAGTTACATTGGATGACTCAATGAAAGTC-AAGAGAAGGAGCTTAATTGACAACAAATTAGCTTCATCTGTCCT-------------CTGTTATATCTC--TTACTCTAGGATATATTTTCCAC--ATTAAGTACACGATACCAAACATT-TGTGACTTCCTGACCAAAACCCTAACA-AGTCAGTAGCGGCTTGGAAACTTCTT-TTAGACTATGAGTCAATAAAATATTATAAATGCCTAG-AACTTTGAGGTTGCATGCCAGGTTCAGAAAAGGCCACTTGTCAGAAAGCCACACTGCTTGGAACAATTTCTGAATTACTGGCATTAGATATTGCCATATTGATTTATTGACTAAAACAATAACAATC--AAAGCTTAAGTAGCAACCGAAATAAGCCAGTGATTTGGGAAGGGGGTGTTACTAATTGTATAGGTAGGTT-TTAAAAAATA----TATTATCATTTA-----------------------------------------------------------------------------------------------------ATTGTTTAGTCAAACCTGGTCACA---CCACTATCACACCTTAGCAAATCTTTATAATATAAA-TATTCTCAATTGTATATCTATTTATTTAGACT a score=104794.000000 s hg15.chr4_random 386840 990 + 1219494 -----------------------------------ttcttt------------gcttaaaatgtcaatgaaa----agaagagccataatttaagattaactgaaatgtcttttaatgtagagtttaccgtgtactctctggaatctttctggaattttttgttgaaga----tct-gttttgatttttt-ttaacagaattttctttcccacattttgggttttgctgattgcatcccagcagtgtctttagcatgattttctt-ccctgt-attccctgtaatttggtaattagatccagaaggttgattagatttgttctaggtgttttgggcaagtgtactttttaagtg------tgtattttcatcaagag-gcaaataacgtctctggttgtctttttgtgatattatcagtactg-atgattatagccgatatcttttatttcattacagattgaaaaatgatgacattcaatttttaacattccttttctttcgtt-gagcagaataattctaa--aaggaggaatgttcccacatcaactctttggttaactggaagtacaagttatttagacaaggcagggtaattcttaattcctttcttttatttaccagatatttggtttcttagcatctttaaaagttgactagtaaaatt----tttgtttttattatcattatgaattcatgcaaacacgtttcatgtattttaatacattgtagttattatccttcata----atgctcaaatgatttcatctttggccagtgtgagt-------ttattcaagcttgatcctgggtccttaaaacatttttcttataggttttgctgacatttttgctttttgttatgacaaaatgatacagattcatcttacacatttcctgtctcagactttgaagcaactatttccccaaggaaccctagatcctttcaatggaaaatgatattgagagacaacagttagggcac-------------------------------------taaaagaactcatttctcttgagttggtctttgattctagaccttttcagtggcaagAAATAGGAAATATAAGTATAAATCAGTGTGT s mm3.chr3 110799685 1058 - 160674399 tCTCTTTCTTGCCATCTACTTTTGCCTCCAAATTCCTCTTTTAAGCTTTGAAAGCTTAGACTGTGATTGAAAGAACATAAGGGTCACATGTTGCGATTCATTAAAATGTCTTCAAATGTAGAGTTTCATGCATCAACTCCAAAA--TTGCTGGAAGCTTCtgttgaagaaagatctagatttttttttttatctgtagaa-----ttccccacattctgggttttgctgattgcatcccagcagggtctttagcactattttctt-ctctctgattccctgcagatttggaagtagctgcagaatgctggtcagatGC-------CTGTTTCTGGCTTGTCTCCTGGTTATATGATGACTTGG-TTTCCATCAGGAGGTTGCATA---TGTCTGGGTGCCTCCCCCTGATACTGTCAGTCATGAAAGACAACTACCTAGGCCATTCCTTCCAGTGTATATCCAAAAATAGTCACCATTCGTGTCCAGGATTCATCTTATTTTATTGGATTAGGATAACTGTGCTTAAAAAGGAACTTCTTTATATTGGT--TCTGGTTAACTACAAGTAGACATTG-TTACAAAAAGAAGGATAACTCTAGA-TCCTTCCTCTGTTTTG--AGCTATTTAATTCCCTGGCACCCATGAAAAGTTGCT-GTAGATTTCATGTTTGCTTACATCAGCCTCAGGAATTCACAGATTTGTGCTTC------TTTGGCACATTTTGATACGTCTCCTATATGTGtgatgctcaaatggttccacgtttggccaatgagaatgtttttttttttcaagtctgattctgagtc---aagacctttttttttaaggctttgttgacagtttttctttctgttatgacaatttgatctaggatcctctgacacatttcctttctcagat-cagtagcaacagctccactagtgaccatgggattcccttgatgg-aaatgatagtgagagaccacCGTTATGACTGTAAAGAATCACATTTCAATAACCAACAAAAATGAAGTAAAAGAATCACATTTCTAATGAATTACTCATTGGTTATA------CTCTGTGTTAAGAGATAG-------ATGCATTAGTG----TGT s rn2.chr2 112282065 1004 - 246339213 TCTCTCTCTTGC-ACCAACTTTTGCCTTCATATTCCTCTTTTAAGCTTTTATAGCTTGAACCGTGATTGAAAGAACATAAGGGTCACATTTTGTGATTCATTGAAATGTCTTGAAATGTAGGGTTTCATGCATCAACTCTAAAA--TTGCTAGAAGTTtttgttgaaga----tctagatttttttctcc-tttgtagaa-----ctccctacat-ctgagttttgctgattgcctcccagcagggtctttagcactatcttctttctctttgatttcctgcagatctggaagtagctgcagaatactggtcagattc-------acgtttTTGGCTTGTCTCCTGGTTAAGTGATGACTTGGGTTTCCATCAGGAG-TCCTGTA---TGTCTGGGTGCCTTCCTGTGTGACTGTCAGTCATGAAAGACAACTACCTCTGCTTTTCCTTTCGGTGTATA----AAAATAGTGACCATTTATGGCCAGGATTCATTTTATTATATGGGATTAGGATAGTTGTGAT-AACCGTGTACCTCTTTATATTGGT---CTGGTTAAGTACAAGTAGATATTG-TTACAAAAAGAAGCATAATTCTCGA-TCCTTCCTCTGTTTTG--AGCTATTTAATTCCCTCACACCCATGACAAGTTGCT-ATAGATGTCGCGTTTGCTTACACCAGCCTCAGGAATTTATAGACTTGTGCTTC------TTTGGCACATTTTGTTACTTCTCCCACATG----ATGATCACATGGTTCCATGTTTGGCCAAGGAGAAC-----TTTTTTTCAGGTCTGATTGTGAGTC---AAGACCCTATTTTCTTAGGCTTTGCTAACAGcttttctttctgatatgacgatttgatgtaggctcctctgagacatctcctttctcagac-cagtaccgaaagcttctctagtgagcactggattccctcagtca-aaatgatattcagagaccacaGTTATGATTG-------------------------------------GAAAGAATCACCTTTCTAATGAATTACCCATTGATTATA------CTCAGTGTTGAGAAATAG-------AAGCATTAGTGAGTATGT a score=2281.000000 s hg15.chr4_random 388169 35 + 1219494 GGATCTATTTTCCAAAAATGTTGTTCCATGttatt s mm3.chr3 110800743 28 - 160674399 GTAACTCCTTT-------TGTTGCTGCATTGTATC s rn2.chr2 112283069 28 - 246339213 GTAATTCCTTT-------GGTTGCTGCAttgtttc a score=14697.000000 s hg15.chr4_random 388204 161 + 1219494 tttatttcatgttattttatatatatatttt-----------aacatttatttttgttttGTAATTAAATAGCATATTTACATTATTCCAAAGTTCAACCTGTAAGTAGCATGTATGCAAAGAAATTCAGTTTATATCCTTCTCACCTCTACCCCATTTTCTTCCATCTCCt s mm3.chr3 110800902 164 - 160674399 TTCATTTT---TTGTTTCATGCATGTTTCTTCTCTTGGTCGAGACCTATGCCTTTTTTTCTCAATTATACAGAATATTTTGAAGATTATAAAACTCAGTGTACAACTAGCATATGTACAAAGATATCCAGCATTCAT--TTCTTACC---ACTTCACTTCCTACACTTTATT s rn2.chr2 112283258 160 - 246339213 TTCACATT---TTGTTTCATGC----TTCTTTTCTTAGTCATGGCGTATGCTATTGTTTTACAATTATACAGAACATTTTGATGATTACAAAATTCACTGTACAACTAGCATATGTTCAAAGATACCCAGCAATTAT--TTTCCCTC---ACTCTGTTTTCTACACTTTATT a score=139154.000000 s hg15.chr4_random 388626 1427 + 1219494 TTTCGTCTCCCTTCTCTATTGATAAACTTAAAAA-TTTTGTGAA-TAT-------ACTTCTGATATTTCTTAATATAAACAACTAC-GCTCACATACATTCTGAAATTTAACACTTCTTAGATAATTTGCAATTTATTCCATATAATTTTCTCCATCTTGACAGGCACTAGAT-GAATGGCTACTCATTCCAGGGGCATAATCTTATACAGGAGACATTTTTAAACATAGTTTATACAAAGCTTACTATTGATGAGTATGTCCATTGTTTCATTTGAAAT--------------TTTTATAACTATAA------ATAGCATAA------TCCATATAATTTATTCTGTATTATTACCATTCAATGACTTGATTTTTATCACAACTAGTTTAAGGTAGGTAGTCATTTCATTACACAAAGAAA-------GACTATTTGTCAGAAAATAAAGTGCTATGAAGAT--TTTA-ATTGATTGGACAACTGATTGATTAATCTAGCGAAACAACCATAATGCATACCGGTGAAAAAACTTAGAACAGGAGGAAAGCAACACCTTTTCACATTTAATTTTGCGTGGAAGTCAAATCTCAAATCAGCAGCAGAGCCTGTAATAGATGAGAGCAACCTCTCAGCATGGTATCTAGCAGAAGTCTCCCCTAACTAGACTCT----TCTAATTCTCTGATACCATGCCTCTGCTTCCATAGTGCTCATCTATTTTT----------TCTGTGTTTACCACTTGCCCCTTGCCTTTTTATGTCAATTGTTATCTATAATATACCATTTAAG---AGAAAAATTAAAGTTTAATAATTTCAGTACTTGAGCTATAG------AGTGAGG--TATCAATTTCACATTACTCAAGTAACTTGGCACACATTTAAAATACTAAAGAGTCTTCCAGGCACTCCCCCATAGTGATGGGAAAAGAGAAATCTTAACTCTTTAAAACTCTACTTTCTGCCATCCCTGTTCACCTGGTCTCGCC-TAGATATCTCGTCTACCTTGGAAGATAGCCAAATCTATTTCCTTCAGAGAACCTC------AGCTTAAATGCATGTTTGATAGGGCCATATAACTTCCCAATTTGCC---------------TCAGAGAATCCTCTT----TTATTTAAAGTGTAACATT------TGTATTGTGGCTCATTTATCACCATTTTTCTTCACGATTGTTTCTGAATTGATAGTTCATTTTTC---AGTTTGAGTGAAGTTGACCTTTAAATAGAAATCAAAGATGTAATTTTTATACTGTTAAAATAGTTGAATGGAAACACAAATGATCATATTAATATAGGCATCTGTGAG----TCCAGACTTCT------CCTTGGTCAAGAAGCAACTCATTATTTCTAGAGAATCACTAAAGGCAGGATTTGTTTAC-AATTAGTCTTTTTTTTTTTAATGCAGTGATAGTTAATAGCTATAATATAATGTTGATATTTTGTTGTATTTCTCCTCCCAATATGCTATTATTTATGTATAATCTTTACATTTATGT s mm3.chr3 110801066 1458 - 160674399 -------------TGTTACAGATTAATTTGAAAAGTTTTGTGGCTTATCCACAATATATCCAATATTTTGTTTTAGAAACAAGTGCAGTTGACTCCCATGCTGGAAGCCAACATGTGTCAGCTAATTTCCACCATATTATGTATGATTTTTCTTAAGCAGGTGATCACTGCTTAGTATGGCTGCAGACTCCATTTGTATAATCATATGTAGGCTTAATTTTCAGATAACCCCAATAA------TACCTTAAATGAATATGAGT-TGGTTCCACTATAAATTTGTTTTTA-----TTTTGTGACCCTAAATTCTAATGGCATAAATAATTTGCACATAAAGTTGTTTGGATTGTGTCCTTTTAATGTCATGAT---------------TTGGAGGCATTTAGTCATGCCATTTAATCAAGGAAGAAAAAGGACTGTTGGACACACAATGGGGTGATTTGAAAATAATTTATGATGATTGGCTAATTGATCG----ATCTAGCCAAATAACTATAAAATATGCTGGTGAAAGAAAGTAAGACA--AAAACAGTAACATTTCTACATAATTGCCATGATTACGAGG--AAATCTGACATTTGTGATAAAG-ATGTA--TACTCAGACCA--CTGTCAGTCTGGGATCCCTCTGCAGTCTTGTCT-CCTAGCCTTTAGTCTTTGAT--TCTGATACCCATTCTTTGCCTTCACTGTACCCATCACTTTCTGTTCTTTTTCTTTAAGACTACTTTTTACCCCTTTGCTTGCCATT----TTTCCATCCCTAATATACAATTTAAGAAAAAGAAATTGAATGTTTTAAAATTTCAGTACTTGAGCTATATACGAACAGTAAGGCACATCAATTTCACATTACTCACTCAGCTTGGCACATACCAAAGGCACTAAATAGTCTTCCAGGCACTCCTCCACAGTGATGGGAAGAAAATCTCTTTAGCTCTTC-AAACTCTACTTGCTGTCTTTCTGACTTATGTGGAACAATTGTGGATACCCCATCTACCTTATATATTGCCCCATCCCATTG-CATCAGAGATCTACTGATAGAACCCAAAGACATACTGGGCATAGCT--ACTGATTCCCACTTTGCTCAGTCTTCATGGATTTCAGTTTATCACATCTAAATTATATAGACTGTAATTTTAAGCAATGAGGTAGAGCACTTCTTTCTCCTTTTGTGTTTGCAATGGTCTCTGAACCAACAGTTCATCGCTTC--ACAGAGAATGACGATGACTTCTCAGCAGGAATCAAGGGTGTGATTTTGATGCTCTTGGAATGATTGCATGGAAATAAAGACAACT------TTATAGGCATCTGGAAGCTTTTGCATACTTCTCTGCTCCCTGAATCAACAAAACACTT-TTATTTCTAGATAATCACCAGTGTC-AGATATGTCTCCCAATTAATCTTGCTTTTCAT------GGAATACTTAAGAGATATTGTTGTAGACTGATGATTTGCTGTTTTCTTGTCTTC---ATGCTATCATTTATGTTG----TTTATATGTGTGT s rn2.chr2 112283418 1440 - 246339213 -------------TTCTACAGATTAATTTAAAACGTTTTGTGGCTTAT-------ATATCCACTATTATATTTTAGAGACAAGTGCAGTTGACCCATATGCTGGTAGAAAACATGTGTCAGTCAATCTACAACATACTATGTATGATTTTTCTTAAGCAGGCGATCATTGCTTAGGATGGCTGCTGATTCTGCTTGAATAATCAAATGTAGACTTGATTTTCAGATAACCCTAATA-------TACCTTAA-CGAATGTGACT-TGCTTCCACTGTAAATTTGTTTTTACAAATTTTGGTGACCCTAAATTTTTATGGAGTGAATAATTTGTGCATAAAATAGTTTAGATTATGTCCAAGTAATGTTGTGAT---------------TTGAAGGTATTTAGTCATGCCATTTAATCAAGGAAGAAAATGGACTGTTGGATAGGAAATGGGGTGATTTGAAAATAATGTATAGTGATTGGCCAACTGATTG----ATCTAGCCAAATAACTATAAAATATGCTGATGAAGGAAATTAAGACA--AGGAGAATGACATTTCTCCACAACTGACATGACTGTGGAG--AAATCTTGTATCAGTGACAAAG-ATGTA--CACTCAGACCA--CTGTGAGCTTAGGGTCCCTCTGCAACCTTCTCT-CCTAGCCTTTAGTCTTTGAT--TCTGAAATCCATTCTTTGCCTTCACTGT-------ACTTTTTGGTCTTTT--TTTAAGACTACCTTTTACCCTTTTGCTTGCTATT----TTTCCATCCCTAATATACCATTTAAG-AAAAGAAAATGAATGTTTAAACATTTCAGTACTTGAGCTGTATACAGACAGTAAGGCACATCAATTTCGCATTACTCATGTAGCTTGGCACACACCAAAGGCACTAAATAGTCTTCCAGGCACTCCTCCACAGTGACGGGAAGAGCCTCTCCTCAGCTCCTC-AAACTCTACTTGCTGTCCTTCTGACTTATGTGGAACAATCGTAGATATTCCATCCACCTTACATATTAGCCAATCCCATTTCCCTCCGAGATCTACTGAGGGAAACCAAGGACACACTGGGGAGAGCC--ACTGCTTCCCACTTCGCCCCGTCTTCATGACTTTCAGGTTACCATGTCTAAATTACTTAGACTGTAATTCTAAGTAACGAGCTGGAGTACTTCCTTCAGCCTGTCTGTTTGCAATGA--TCTGAACCAGCAGTTCATTTTTTTTAATGGAGAATGAAGATAACTTCTTAGCAGGAATCAAGGATGTGATTGTTATGCTCTTAGAGTGATTGCATGGACATAAAGGCAACT------TCATACGAATCCATAAGCTTTTGTATACCTCTATGCTCCCTGAAT---CAAGACACTT-TTATTTCTAGATAATCACCAATGTC-GGATATGTTTCCAAATTAGTCTTGTTTTTAAT------GGGATAGTTAAGGTATACTGTTGAATATTGAGCATTTGTTGTCTTTTTCTCTGC---ATGCTATCATT--TGTAG----GTTATTTGTTTAT a score=13265.000000 s hg15.chr4_random 390069 312 + 1219494 AAGGAATGTAAGGCAGAAAGGGATTGACAGGGATGCTTT-TTGCACCCTGTCCCTAACTCTCTCTGACAC-ACAATGTCCACTCTCCTTTACTGTCCTCCAGAAGGTGCAAATGTTTCTTCTCCTTTAATTTTTCTCACCACCACCTCTTTCCTTTATGTGCTTCTTCTACTGCTATACTCCCATCTAGAAAGAGATGTAAAT-ACAACTTTTCTACCAACCCAGAAACTAGTTTACTTGTTTCAATATTTTATGCATAAGACAG--------------------------------ACATCATT-------TTCATAGCCAAATTTCTTGTTTTTGGAAAGATTCTAGTGAAg s mm3.chr3 110803411 340 - 160674399 AGGGATTGTAAGGTAGGAAAAGACAGACAGGAATTATCTATCGTATACTGTCCCTATCCCCTTCCATTTCATGTAGATTCATGATGCCTTCCTGAAGTTCCAAATATATTTACATCCTTTCCTCTTCTGCCATTCTCACTGTGA-CGATGACTTTCACATGCCTCTTTCATC------------TCTGGGATCAAACAGAAATAACAACTTTGCTATGGAATTAGACAGTA-TTTAGTTATTCCAATGTTATATGCACACtaggggggttggggggagggcatgggggacttttgggatagcattggaaatgtaaatgaggaaaatacctaatTTTAAAAGTATGATCCTTCAT s rn2.chr2 112285334 248 - 246339213 AGGGATTATAAGATAGGAAAAAACAGATGGGAATTATCTATCCCACACTGCCTCTCTTACCTTCTGTTTT-TGTAGATTCATGGTTCCTTCCTGACCTTCAACA-ACATTTATGCCCTTTCCTCTTCTGCCTCACTCATTGTG-------------------CCTTTCCATC------------TCTGGAAACAAATAGAAATAACAACTTTGCTATGGAATTAGACACCA-TGTACTTATTTCAATATTATATGCACAATATGG------------------------------------------------------------------------AAAACATAGTCTTTCAT a score=17020.000000 s hg15.chr4_random 390691 208 + 1219494 gaTTCTAGT-------------------GAAATAAGtctcagctttga------------ctgtagattataatcacctgg-ggaacttttccagctcctcaggaagcaaaacagaccaatgaagtcagactctctggggg-tgagacccaggcatcagcgttttctaaagctcctcaggtgattccaatatgaaaccaaagGGAAGATCATGACAAAAAAAATGCAGCATTTCTCTAAGG s mm3.chr3 110803751 207 - 160674399 GGTCCAATTTTCTTAACTTTA-------GAAAAATG-ctgagttttga------------ctggaggtgataatatcatgatgggacttttcaaaatgcccagcgtgcagcccagacccaggatgtcaggttctctggcaggcgaagtcccaatgtcagtgttgtgttaagttctt-----------aacatgaaaccaaggtacagAACCTTTAGAGAACAAT---GCATTCCTCAGAAG s rn2.chr2 112285582 220 - 246339213 GATCCAATTTTCTGAACTTTAGAAAGATGAAAGATG-CTAAGTTTTGAAGTGAATAATATCATGAGGTGGTAATATCATGATGGGACCTTTCACAATGTCTAACATGCA-CCCAGACCCAGGAAGGCAGGTTCCCTGGCAG-----GTCCAGATGTCAGTATCATGTTAAGTTCTG-----------AACATGAAACCAAGGCACAGAATCTCTAGAGAACAAT---GCATTCCTTGGAGG a score=559.000000 s hg15.chr4_random 390899 19 + 1219494 ATCATACATCCGCTGTTCA s mm3.chr3 110803958 19 - 160674399 CTCACACATGTGCTTTTTT a score=137928.000000 s hg15.chr4_random 390918 1318 + 1219494 GTGTCACTGCTGAT---TAAGGGAGAGCCACTG-------------TTCATTTGAGAGGCAATCATGACCCGGAGTACAAAAAGTTTTGTG----AATCAATGCCATCAGTTCAATAAAACAAACATTCATCACAAACCTCATTAACCAAACTAGCATTTATAATTAC-AAATAGTTAAGGTAAAATAATACTTTGAAGAATAAAATAGAACTCTGTATTGACTCTATATTGTGATTAACAAAAAAACCCGTTAAGTGCTAATATTTAAACTACTGATTCAAATTGCAGAATGAAAATCACTAGGAATGATATTCACCCTACCCAAGGAATTTGACTAGTGTGGCATTCATAACAGTTATCTTCCAGATCCATTTAGACTCTGATATTTCATTTTATAGAATTTTTACTTTTATTCACACACAAACTTCTTTAATGGAAATTGCCCATATGTCATACAATACATGATTGACTTATTTTACATTTGCTTAACAGCCTTATTCTTTATTCCATGATTTACAGAGACTTTC-TAAGGGCAAAACAGTCAAACAATATCTTAATAACATGATGGTTTTAAAAGGGGACTCAAGGCAAAATGTGAATATGACACTTTAACATTGATTA----------------GCAGATAGTCCGTCTAAAGACTGAATTCAGCACATCAATTTTGTTAGCAATATACACAGATTTTTTTTCCTTACTA-------------GGTAATGGTAAAATTTTA--------CTTTTTATCAGAAA-AGTA-----ATTTTTCT--------------------------------------------------------------------------------AACACATGAAGAATAAGTTAATATGTGTTTACATTTGTATGTGTGAT---AGAGTTTGAAAATTCAGGTTACTTCTAACTCTTATCATGAAAATATTAAAATTTGTATAT--TCTTTAATTTGTAAGAGGTGATACCAGCTGTTTCATTATGCATTGTATTTGCTCAGGGATTTAATTCATGTGCCTGGGAGCATATGCTTTTTAGAAAACATTTTAATAAACATTTGGATGTTGTCATACTTATAACTCTGGAGAGAAAGTACACtttattattttaattatatt--aGCATGTGGCTGTATGGCATTACAT---TTCCTGAAAAGTTAAATTGACATATTAAATAAATAATGAAAGTATATATGAATTCACACATATCTATATATATTAAAACTGATGCATATTAGAATCCTTAGAGAAAATATAGCAAATATCTTTGCTATAATGTTATGCCCGATTCTATTTGTTATAGCATAATAGTAAGCCAAGTACTGAGCTTGACTTGGTCCAAATATCTTGGTTCATTAATGCAGATTTGCTTTGTTTTAGGTACAATTTTAAAAATAATATCTGAGACAACATTGCTAACATGATACACAAAGATAA s mm3.chr3 110804128 1206 - 160674399 GTGCAATTCTTAATCCCTAAGAGCAAACtttttttttttttt----tttttttttGCAGTCAGTATGACTCTGAGCAGAAAAAGGTTTTGG----AATCAAAGCTATCATCTCTGCAAATCATTGATTCCTGACAAAACCCATTAGCCAACCTACCGTTCACAATTGCAAAATTGCTAAGGTAAAATAATCACTTAAAGATTACACTATAACTCTGTGTTGACTTGAATTTGTGATGAAGGCAAAGGAGAGGTCAGGGCTAATATGCAAATGACCTGCTCAAACCACAGAATAAAAGTCATTAAGGACGATATTCAGCTTACCCAAGAAA---------TGTGACATTCACAACGGTTATCTTGGAAAACCATTTGCACTCCAACTTTCTCTTTTATAGTA-TTTTGCTTTTACCCACATACCATCTTTCTTAATGGAAATTGCTCAC-----ATACAATACACGGTTGACATGTTTTATATTTGCTCAGTAG-------CTTCATTCCGTGATTTAAGAGGACTTCCATAAGGGC-AAACAGTCAAACAATATCTTAATAACAGGATGATATTAAACAATG-CTAAAGGCAAAGTGTGACTGTGACATTTTAACATTGATTAGTAACATGAATGCAATGCTGATATTTCATCTAAAAATTACATTCAGTAAACCAATTCTCTT--------------CCTTTTTTGACATGT---------------GCAAATGGTAAGGTTTTA-CCGTTTGCTTTCCATAAGAAACAGTG-----TTttgtttgtttggttggttggttgattggttggtaggttggttggttggttgattggttggttggtttggttTTGGTTTTGGTTTTTAACAGAAAAGAGATAATGAAATACTGGCTTATATTTGTATGTTAAGA---AAAAA---AAAATTC-TTCGTCATTTAATCATCATCGAGAAAGTATCAAAATTTATATATTGTTTTTGCTTGTTAAGAAATGATAGCAGCTGTTTCATTATGCATTCTAACTGCTCTGGG-TTTAACTCATGTCCCTGAGAGCATATGCTCTTT---AAACATTTTAGAAAACATTTGGATATTGTCATCCTTATGTCTCTGGAGACAAAGTGTGCTCTATTATGATAATCATACTTCAACATGTGACTGTAT--CATTTCAT-TCTCTCTGAAAAGTTGtatttatata-tatatatat-atatatatatatatatatatatatatatatatatatata---------------------------------------------------------------------------------------------------------------------tCCAAATG---------ACAAAGGCATGTTTGC----------------------------------------------------------AAACTATAA s rn2.chr2 112285814 1157 - 246339213 GGGCAATTCTGAATCCCTAAGAGCAAGCTTGTTTTTCGTTTTGTGTTTTTTTTTTCCAGTCAGCATGACTCTGAACAGAAAAAGTTTTTTGTTTGAATCAATGCTATCATCTCTGCAAATCATTGATTCCTGACAAAACCCATTAGCCAACCTACCGTTTATAATTGCAAAATTGCTACGGTAAAATAATCACTTGAAGAATATACTATAACTCTGTGTTGACTTGAAAATGTGGTAAAGGCAAAAGAGAGGTCAATACGAATATGTAAATGACCTGCTCAAGCCACAGGAAAAAAAGCATTAAGAATGATATTCAGCTTACCCAAGGAA---------TGTGACATTCATAATGGTTATCTTGCAAAACCATTCAGACGCCAACATTCTCTTTTATAGTA-TTTTACTTTTATCCACATACCAGCTTTCTTAATGGAAATTGCTCACATGCAATACAATACACGGTTGACTTATTTTATATTTGCTCAGTAG-------CTTTATCCCATGATTTAAGGGGACTTCTGTAAGGGC-AAATAGTCAAAGAATATCTTAATAACAGGGTGATATTAAACAATG-CTGAAGGCAAAGCGTGACTGTGACATTTTAACATTGATTAGTGACATGAATGTAATGCAGATATCTCATCTAAAAATTATATTCAGTAAGTCAATTCCCTC--------------CCTTTTTTGACATGCCAAAATTTTCCCGAAATAAATGGTAAGGCTTTATCTATTTGCTTTTCATAAGAAAAAGTGGGGTTTTTTGTTT---------------------------------------------------------GTTTAGTTTTTGCTTTTGTTTTGAACAGAAAGGAGGTATGGAAATATTTGCTTATGTTTGTATGCTAAGAGTTAAAAT---TAAATTCAGGTGACATTTAATTATCATCGGGAAAGTATCACAATTTATATATTGTTTTTGCTTGTTAAGAAATGATAGCAGCTGTTTCATTATGCGTTGTAACTGCTCTGGG-TTTAACTCATGTCCCTGCGAGCATATGCTCTTTAG-AGACATTTTAAGAAACATTTGGATATTGTCATCCTTATGTCTCTGGAGAGAAAGCATGCTTTATTATTGTAATTATATTTCAACATGTGACTGTAT--CATTTCATCTTTCTCTGAGAAGTTTTATTGGTATA-CAGCT----------------------------------TATATGTATC---------------------------------------------------------------------------------------------------------------------ACCAAATA---------ACAAAGGCGTGTTTAC----------------------------------------------------------CGACTCTGA a score=149009.000000 s hg15.chr4_random 392236 1503 + 1219494 AACACAATCTGTTGCTGTTGGAGATCTATTTGTATTAATAATATATATGCTTGCATTCTATTATT--TTCAACAACATTCCATGCTATAGACTTCT-GCAATAACTGAGATGGAATTTAAGCAGTTGGCATGTGTTTCAGTTTCTGTGAAGTTCACATTTTTCATAATGCATTAAGAAGAAGAACTATTACTAAAAGCTCATTTATGTTATGGACATAGGCAAGTATGACAAGCAAGGCCTAGTTAACAAC-ATGATTGTGCAAAGCCATGAGGAGAGAGAGCCTATAAACAAAACCTGTTGCAGGAGCACAGTAAATTCTAGGGGACTTACCCAAAAGCATTAAAAGAAAATCCAATGTGGTGAGTAGAACACTGGAGGATCTGACAGCACACTACAGACCATCATTCATTGAGCACTTGGCAGCGTAAGATGAGATTGCTGGTAGTGCAATCTCACAGTAGGTGGTGCAAACAGCGAGGATTCCAGAGGA-GATTCCAAAAATAG----AGGCAGCATCATGGAATTTCACCAGCTGATATAAAGACAACAGTCATAAC-AGTTTGGAGGAGGATTGAGTAACTTGGAGTTGGAATGGTGAGAGAATAAAACTAGCAAAACCAAACAGTGTCTAAACGTCAATTATTGAAGTGGGACAGTAGGCAAGGATGACGCATCAGGT-ATAAAGAAGTCTAATTAGAGCCACGCAACAGGCCTAGTGTCAGTGTCAACATAAGCATCAATAATTGCTGAGCACCAACATTCATACCTCCTTCCTGACTCAGGC-AAGATTGGTTTTGGATATACTG---GGGCAGAGCTCAGAACTCTGGGGATGGAAAGGGAAGGGTTCAAATGGTCTGAGACAGGAAAAAAGAGAAATACAAAGGCTGTGAACCAGACAGCATTCCATGTGAGTAGCAGAATTC-AAGAAACAACTAACAACATAAATTGTATTTGTGTGGATGC-AACTTTTAGAAAAATCTGCAGTCACACTTCTGCATGGTACAGAGAAGTCAGAATTGGGGTTTTACATTCTTACCGTGCAAGTCTTTGTGAATATTGTAAATAACCAGAGATGTTCATACTAAACTT-TTGCGTAATAGAAAAATGAC--TGAGTGTT---CTATTCTGTTAAGAA-ATCTAGGTGTGCACAATTTCTTCAATGGCATGTTATCACTTACATCAAGACAAATACATAAGGA-----ACT-----CAGATACC--C-------ACTTTTATTTTGTCTAAGAAGCCAGGGGGCAATGCATTTTCTATAGATTCAAATATACATTACCTATCCTTCACACAAGAATTAT----AACTATAACCATTAAAATATTTAAAAATGAAGATATTT-TTTCTCCATCTACATGTTGGTGAGCTTGAATTATATCACATCCCAAACATTAATTTTATTTT------CTCCTGGGTTTTATTTGAGAAAATTTGCATTTTGGGAAGAAGCAAAGAATGGTTTATAAAATTAGGTAATTTAAAACAAACCATATAATCTTAACCAAAATTTCTTT-TTTCCTAA s mm3.chr3 110805334 1427 - 160674399 ATCACACTGTTCTGAATTAGAAG-----------TTAATAACATATCTGTCCATATTCTGTTCTTGTTTTTAAAAGGTCTCACACTATAAATTTTT-GTGATGTTTGAAATGTAATTTACATAGCTGGCACATGTTT-GATTTCTCTGAATCTCTCATTTTCAGTTATATACTAGGCAATTGAAATACTTGTAAAG----GTTCATGCCCCAAACCTAGGCAAGTATGACACAT-GGATTTGGTCAATGGCTCTGACAGTGCAAGTCCATGAGGGAAGAGACTATCTAAAT---------------------GCAAATGCTAAGAAACCCATCTAAGTAAATGGGGAGAAACTCTAATGTAGAGAGTAGAAGACCAGGCTGGCTGGCAGCACACTCCAAATTGCCCTTCCACCAGCACTTAGCAGCCCA----GAGATCACAGGGA----CTTCCCTGTGGAGAAGGTACAAAGGATGAGGTTGCTAGGAAGGAGGTCCAAACTTAGTCCTAGTCGCCATCATTGACTTCCTGCTGTGCATACATAGGCAATAGTCAAAACCAGTTTGGTGTAAGACCCCAGGACTTAGAATT---------AGAAAATCAAAT------ATTTGAATTGTATGGGAAGTTTATCTATAAGAATGAACCTGTAGGCAAGGATGATATACCAGGTAAGGAACAAGTCCAGGTACAGCTACAAAA-AGGCT---------------------CATCAATTATTTCTGGGCTCTATTGTTCAGCTCTCCTCTCTGACTCAGTCTGAGATCGGTTTCAGATGTACTG---GAGCAGAGCTTAGAACTCCGGGGGAGG-AAGGGCAAGACTCAGCTGCACAGGGA-GGAAAAGGAGAGAAATACTAAAGTTATGAACGAGACAGCA-CACATATTGGTGCCTATACTCAAAGAAGCA---AATAACACTCATTTTACTCTCACAGATGCAAACTTTGACAAGAATTCCTATCAGCTGCTCTGCAGAGC-CAGAGCGG--------GTGCTTTCAGCTTCATAC------ATTCTTTGTGACTCTTGAGAATAACCAGAAATGTTCATTCTAGACCTTTAGAATAACAGAAACAATTT--CACACGTC-TGCTAACCTGTCAAGAACGTCTA--TGTACACA-ATTTTTGGATAAAGTATTATCTGTTAGATCAAAACAAAAAGATAATTACAACCCCTCCCCCCAGGTACTTACTTTATAGCCTTTGCTTTTGTCTCTGTAGCTGTGGAGTAATGCAAACTCTGTAGATTCAGCTTTTCATAAAGTGCCTTTCACACCTGAACTGTGACAAACTATGAACATTTGAATATCT-AAAATGAAGATTTTA-CCCCTTTCTCTATATGCTGGCAAGTTTGAGTTATATCAGACTCCTGACATTTATGTGATTTT------TTTC----TTTTATTTGAGGAAATTTGCAACCTGAAGGACACTGTACAATGGGGTATAAAAATGAG--AGTTTTAAAAAGTTATATAATTCT--TTAAAATGTTTTT-ATTCCTGA s rn2.chr2 112287329 1413 - 246339213 ATCACACTGTTATGCATTACAAG-----------ATAATGACATACCTGTCCCTATTCTGTTCTT-CTTTTAAAAAGTCTCACATAATGAATTTTTTGTGATGTTTGAAATGTAATTTACATAGCCGGCATATGTTTTGATTTCTATGAATCTCTCACTTTCGGTTGTACACTAGGCGATTGAAATATTTGTAAAAA---GTTCATGCTCCAAACGTAGGCAAGTATGACACAT-GGATTTGGTCAATGGCCATGACAGGGCAAGTCCATGAAGGAAGAGACTATCTAAAT---------------------GCAAATCCTAAGAAGCTCGTCTAGGTAAATGAGGAGAAACTCTGATGTAGGAAGTAGAAGACCAGGCTGGCTGGCAGCACACTCCAAATTGCCATTCCAGCAGAGCTCGGCAGCCCA----GAGATCACAGGAA-----GTCCCTGTGGAAAAGGTACAAAGGATGAGGTTCCTAGGAAA------CAATCCCAGACCTGCTCACCATCATTGACTTTCTGCTGTGGATAGAAAAGCAATAGTCAAAACGAGTTTGGAGTAAGACCCCATGACTTAGAGTT---------AGAAAATCAAGT------ATTTGAACGGTATGGGAAGTTTCTCTATAAG--TGGACTAGTAGACGCGGATGACATACCAGGTAAGGAACAAGTCCAGTTAAAGCTATGCGA-AAGCT------------CAGAATGAGCATCAAGTATTTCTGAGCTCTAGTGTTTATCTCGCCTCCCTGACTCAGGCTGGGGTTGGTTTCAAATGTACTTCTCGAGCAGAGCTTAGAACTCCAGGGGAGG-AAGGGCAGGGTTCAGCTGCATGGGGA-GGGAAAGGAGAGAACTACTAACGTTATGAACTAGACAGCG-TACATATCGCTACCTGGACTC-AAGGAGCA---AATATCACTCATTTTAATCTCACAAACGC-AACTTTTACAAGAATCTGTATCAACTGCTCTGCAGAGC-CGGGGGGG-------AGGGCTTTCGGCTTCATGG------AGTTGTTGTGAGTCTTGGGAATCA-CAGAGATGTCCATTCTAGACCC---------CGGAAACAGTTTGACACACTTCATGCTAACCTTTCAAGATCGTCTA--TGTGCAGAGATTTTTGGATAAAGTATTATCTGTGAGATCAAAACAAAAAGATAATTACAAACCCT-----CAGTTACT--CTGTATAACCTTTGCTTTGGTCTCTGTAGCTTTGGAGTAATGCATATTCTGCAGATTCAGATTTTCATAACATACCTCTCACACCTGAACTGCAACAAACTATGAACATGTGAATATCT-AAAACGAAGATTTTATCCCCTTTCTCTATATGCTGGCAAGTTTGAGTTAGATCAAAC-------------GTGATTTTTTTTTCTTTC----TTTTATTTGAGAAAATTTATATTCTGAGGGACATTGTAGAGTGGGGTATAAAAATGAG--ATTTTTAACAAATTATATAATCTT--TTTAAATGTTTTTAATTCCCga a score=172591.000000 s hg15.chr4_random 393739 1759 + 1219494 TGCTATATTAAAAATGTATATGTAGTAATGAAA---TTTTAGGTTTTGATG----------------------TATGGCAT-TCAAAGGAAA-----------AGCAAGATAATCAGTATCAATAAGATTGT-TTCCTGTTTCTATGAAATATA------------------------GAGCTAAATATATAC-AAAATTTTCAATAGTGCTATCATAAATACATATTTTTTAATTGTAGTCATTGAAGTAAAAGTTTACCTATTTTTCACTATCT------AATTTTTTTGTAAAAGTACA-AATTAATCTTCATAGCT-------------TTCACTATATATATAGCACTGCTTTCACAGCTTTTAGCAGCCTAATCATTCTTCTGTTGTTCCAA----AGAGGCTTTATTTCATTTGAGCAGACTGTTTTAAATGCTTCTTTTTAAAAATTAAGTTATATCTTTAAGAGAAGGTGCAGTTTTTGTATCACTTATTTGACATCAAGGAAGGAGGTTTTCTTTTAACCTCCTTGTAGCCTACATGTCAATAAATAATAGGCTTCTGCTATTTAACCTAT--------AAAAAAATCATTTA-TTATCACCTCACTCTTGTCCAACATAAACTTGTTAAAAACTGCAGTTTGTAAATATTTATCATGAAACAAAATGGTGAAAGGGACAGTACACTTTTAATTTTCAGGTAGCAG-GCTGATATTTATGCAATTTAACATAATCGGACTGCTGAGGCTTTAAAAATATAGGCTTTCTTGAATTTGTCATGTTTTGTGAATCTTTCTCTCCTTGCATAACAAAACACTCTGTTTACTCTCTATGGAAAATTACTCAAAACTCTTTTTCTCAGGCAGCTGTAGTTTTGGCCAAAGCTTCCACGAGATGC-AAAATTGGACCTAGTATCAATGAG----------GACAGTAGAAAGAACTATTGTTGTTAACTGATCATAGCTCCTTAAGTGAAAATGTTAGGAGACCAAACACAGGCCTTTGAAATATGAGGGAGGCAGTCTTTAAAGATGTGGCGTGTTACTTATAAAATGAAATAAAATTCCACATTTTAGAAACTCAGTTACTTCAAGGTGTTGATTTTAGGTCCTTAATCTTTTTTTTTTTTTGCTCCTTCTC-TCTTCATTCCAAAGGCTTTCCTCTGTGTGATCTCTTTCCCCCAAGAAAACTTTCCAC---TGAGTTGAAAGCTTGGGAACTCTTAAGTTTAGATGAATGATAAT-GAGCATTGTCAAAGAGGCAGTAAAATTGAGTCCTTGGTTCTGGCTGTTGAGCTGAGAGCTGCAGGAGTTAATTGTGTGAATGGTAATGAGACCAGGGAGGCAGCAGATGCTCGCGTGCCTTTACAATCCAAATC-------CCACCAACAAATTCCTCCCACAGAAACTTTGAGGGACATCTTGGC--AC-----CCTGGAGATGGAGATAGACCCAGCCATAGCCACATGCCACCTGCTAGACCTATTG-------TTAAAAGAAAAAAAAGCACATTACAATAACAAAGTTGTTTGCTGTCTTTTGCAATGACTTTATGGCACCGG-------------------TTTT----ACCATACTAGAGGAATGGAACATCTGATTCTTTATGAAGAACTATCTGCACCCTAAACAGTTAATGACTTAACATGTAAAGACTGATGTTCACTATATCATACAT--------------ACTCTTCTG-ATAAGCCATGCCTGCCATTTT-CTCTTATAACT-CCCCCCGAGGCTGTCTATTCTACAGCAGATTTGCAAAACTATATAGTTTTTGATGACCTTCAGAAAAGGGGCCATTTTTGCTCCTACAGAAAAA----------AAAAAAAGGGCTT---------AGAGTTGTTATAAATACATATCTTTAAATAAAAACCACTTTGGAA s mm3.chr3 110806889 1774 - 160674399 TGCCATAGAAATAAAAAGTATGAAATAAACAAAATGTTTTTATTTCTACTGTCAGTCAGCATGTGTGTATGCTCTTTGCATATTGAATGTAGTGTGCAGGCTCTGTGTGTTCATGAGAATAGTGGAAGTTGTGTGTTTGTGTCTTTGAAATGTCAACAAAAAGCAGGAAGATAGGGCAAAGCTCAATGAATAT-AAAAATTCCAGTAATAGCATTGCAAATG-ATTTTTCCTAATTGTGGTCACTGATGGAAACTTTCACCTACTGCAAATGAGCTTGCAAATATTCTCTCTTGAACCTGAG-TTTTTATATTCACACATATGGCAAGTTCAGCTCACTCTTGGGACAATGTTGCTT--GAAGCCTTCAATAACCTAATCTTTCTTTTGTATTTGTGAAGGAAGAA---TTACTCCATCTGAGTATATTATTTTATCTACTTCTTCCTCAAAGTTAAGTTTTATGTTTAAGAGAAGGTTCAACTTTCAAGTCACTTAGTTTATATCAACCAAGGAGGTGTCATTGAACCCTCTTTGAAG-----------ATAAACAACAGATTT---ATATTTAAATTGACAGCTA--AGGGATATCATATATTTATTGTTTCA--CTTGTCCAACATTAGCTTGTTACTAAATGAAGTTTATGAATATTTATCA-GACGCAATGCAGTTAAAGAGACAACATG-ACTTAATTTCCAAATAGCATCTCTGATGTGTTTGCAGTTTAATATGGACGAA--GCCTGAGTACTCAGAAAGCAGCCTTGTTTTGGTCTGTCCTGTATTGT---TCTTTGCCTTC-TGCATAACTTCCTGTTCTGCTTA------ACTGGGAATTACTTGGTATTCTTTTT-GCATCCAGTTGTGCTCTTGGTTAACATTTATAG--GTTATCAAAATCTGGCCTGGAGTCAA-GGG----------TGCAGCAAATGTGGTTATTA---------------------TTACGTGAATATGTTAGAAA--CAAATATGATACTTTGAAGCACATGTGA-----TTTGGAATCATGTGGTGTGTT---------AGAAAATAAAATTCTCCAGTCGGGATCCTGGGTCAAGCCA---------------------------------TCTTTACTCCTCTGA-TTTTTATTTCCAGATATTTCTGGATTGTGGTCCCTTTCTT---GGGGAAACTCCCTC---CGACTTGAAGGCCTGAGAACTCTTACTTCCAGATGAATGGCAATGGAGCCTTGTCAAGCAGGCAGCACAATGGGAGCCTTG---GTGGCTGCCCAGCC-AGAGCTGCAGGAGTTAATTGTGTGAATGGTAATGAGG-CAGGGAGGCAGCAGATGCTCTCGTGCCTTTACAATCCAAATC-------TCACCAACACATTCCTTCAACAGAAA-TTTAAGGGACATCTTGCCCACCCCCTTCCCATAGACAAGGATAGACACACCCTTAGCCACATGCCAACTGCTAGACCTATTGGTTTTTTTTTAA--------AGTCCCATCACAATAGCAGAGTTGTTTGTTGTTTTCTGCAATGACTTGGTGGGCTTGAGattttttttttatttttatttttttGACTGTAGGAGAGGAATGGAATTTTGCATCCTTTATAAGGATACACTTGCACCC---ACAGT----------AGGGACAGGGAGTTTTGTTCACTGTAATGTGCCTGTGCTAAAATGAATACTAATCAGTGCATATAATGATAAACATTTTGCTCTTGACACTGTTATTTGGGTTTATTTATGTTACA-TAGACTGATGGAACCATAAGGGTTTGATTACCATTTTGAGGAAG---TATTTTTGTCCTTACAGCAAAATTACAATAGCAAATTGGGGATTTACATCC---AAAATGGTGATACACAGCAGTTATTAAGT--CCACAATTTA---- s rn2.chr2 112288881 1780 - 246339213 TGCCAGAGAAATAAAAC-TATGAAATAAACCAAGTGTTTTTATTTCTAATGTCAGCCAACATGCGTGTATGCTTTCTGTATATCAAATGTAGTTTGTGCCTTGTGTGAATCCAAGAGCATAGATAAAATCGCATATTTGTGTCCTTGAGTTGTCAATGAAAAGCAGGAAGATAGTGC-AAGCTCCATGAGTATAAAAAATTCCATTAATAGCATTGCAAATA-TTTTTTCCTAATTGTGGTCACTGGTGTGAAATTT----TACTGCAATCAAGCCTGCAAACTTTCTCTTTTAAACCTACGATTATTTTGTTCTCACATATGGAAAGTTCAGCTCACTCTTGGGATGATGTTGCTT--CAAGCCTTCAACAACCTAATCTTTCTTTTGTTCTTGTGAAGGGAGAAGTCTTATTTCATCTGAGTGCTTTATTTTACTTACTTCTTCCTCAAAATTAAGTTTTATCTTTAAGAGAAGGTTCAGCTTTCAGATCACTAAGTTTATACCAATCAGGGAGGTTTCATAGAACCCTCTTTAAAG-----------ATAAATGGCAGATTT---CTATTTAAATTGGGGACTAGGGGGGATGTCATATATTTATTGTTTCA--ATTGCCCAGCATTAGCTTGTTACTAAATAGAGTTTATGAATATTTATCA-GAGACACTGTAGTTAAAGAGACAACATG-GCTTAATTTCCAGATAGCATCTGTGGTATGTTTGCAATTTAACATGGCTTAA--ACCTGAGTACTAAGAAAATAGCCTTCTCTT-GTCTGTTCTGTGTTGT---TCTTTCCCTTC-TGCACAGCTACATGCTCTGCTTA------ACTGAACATTACTTGGTGTTCTTTTT-GCATACAGTTGTACTCTTTGTTAGCGTTTATAGATGTTAT-AAAATCTGACCTGGAGTCAA-GAGTAACTATTATTACAGCAAATGTAACTATTA---------------------TTAAGTGACTATGTTAGAAA--TAAATACAACCCTTTGAAGTAAATGTGA-----TTTGGAATGGTGTGGCCTGTT---------AGAAAATATAGTTCTTGAGTCAGGATTCTGTGTTAAGCCA---------------------------------TCTTTACTCCTCTGATTTTTTATTTCCAGTTCCTTCTGGACTGGGGTCCTTTTCTT---GGAGAACCACCCTCCCACCACTCGAGGGCCTGAGAACTCTTACTTCCAGATGAATGACAAGGGAGCCTTGTCAAGGAGGCAGTACAAT-GGATCCTTGGCTGTGGCTGCCCAGCC-AGAGCTGCAGGAGTTAATTGTGTGAATGGTAATGAGG-CAGGGAGGCAGCAGATGCTCTCATGCCTTTACAACCCAACTCTCACCAATCACCAACAAATTCCTCCAACAGAAG-TCTAGGGGACATCTTCCCCGCC-----CCCAGAGATGAAGACAGACACACCCTTAACCACATGCCAACTGCTAGACCCATTG-------TTTAA----AAATAGTCCTATAACAATAGCTGAGTTGGTTCTTGTTTTCTGCAATGACTTGATGGCACTAGGATTTT-------------TTTTTGTGACTATTCTAGAGAAATGGAACTTCATACCCTTTATGAGGAAACGCTTGCACCC---ACAGT----------AGGTACAGGGAGTTTTGTTCACTATAATGTACATCCAGTACAACGAATACCATTCAGTATATATACTGATAAACACTTTGCTATTGAAACTGTCAACTGAGTTTATTTATGTTACA-CAGGCTTATGGGACCATAAAGGTTTGATTACCATCCTGAGGAAG---TATTTTTGTCCTTACAGAAAAATTACAATAGCAAATTTAGGATTTACATCCAAAAAAATGGTGATACACCCCAGATATTTAGT--CTATCATTTA---- a score=118661.000000 s hg15.chr4_random 395498 1346 + 1219494 AAATGCTCTGAATGACCCATTTTTATTGAGTTTGAGTTGTTGCCCACTATCCTTTAGTAGTAATAATTTG---CTACGTATCTAAGATGAGGA------AGGCCAGAA----------TGCCT--TGTTTAACA---AAATGAATGATCAG------AATGAAGGCAAGAAAAATTAAAAGTGGTTCTCACACACTGGCCCTGGAGGTGTGTGTGGCGGTGTTTTCCATATGGCAATTTAGGACTCTCCATGAGGATAGTTAAATGGTGTAAAATTGTAAGAAAGTCTACTATTGATTAGTTACTTTCACTTTTGAGGGTGTATATACCTGATTTTTAGAAACCTTGGTATATATTCCTTGTATGAAATAATAGGCCTAGTTCCAGTATTAGAAAACAGGGTTCATTTAAATGGCAACTGCAGATAGGGCAGATTTGTGCTGTTTACGCC----ACCCCAGGAAAGAGGCTCCCTG-------TCTCTGTCTAGGTTAAACAAAAGCTGCTTACGTCCCGTCCTCACTTTTTGTTCAGCTAGTT-GACCCTCATTATTATAAAAGCAATTAGTTAGGCTGGAATTTCTGAATTCATTATAGAAAACCTTTGACGACCTTGTGTTAATAGTACAGATTTTAGATTGAAATATTTATTTGCTTTGCAAGTTTATAT----CATTATCAATTCAGGTTTTGGCTGCATAAGTGCTGTGATGCTGGATTATTCTGTTTGTAAAGACCCAAGATTCTATAGTAAATAGAAAACTGTGTT---------------------CTTTTCATAACAATAAAATATGTGCTTCTGACTTACTGAGAAGTCAGAAATGGAAGCATGTGGGAGCAAT-ATGTAAATGCCAAGAAAGCTGTTTATACTGGGATATGTTCCTGCATAATAATCATAATCCAATCCTAGCAGAAACCTTTTGAATTTAAAACGTTGTCGAGTTACAGCAAAACAGAAAGAACCACAGCA---AGTGTTGCAGTTGCTGATTATTTGTGAGAAAGCTAAAATATGTTTACTTTT-------------GATCTTTTTTTT-----------------------TAAATCGGGAATTTCTGTATAAGTTTATCATTC----------------TCCAGTAAGA-TCATTTTAAA--------TAT--TTTATTGTGATTTAGTGAACTGCTCTAGAAAAAAGGGG---------------------------------------GGACATTTTGAGATTCATTTT---------------------------------------------------------------------------------------------TATTTGGAAAGTTAAATCCAATACTTTTGGCTGAGCAAGGTAAAGCACATTTGCTTGCCTTAAATTATATTGCCTTCTTTACCAAACATGTTAGAGTCTTTCATTTAGCCTCACAGCCAGAAGCGGACTTTCCAGAAAAGTGTGTCAAAATAAATAATACATTGAATACTCAAAGTAA----AACTGGGTATCCAGGTACACTTTTTATGTCTTCCTCCCAAATTTAGGATCCAATCCATTATTCA s mm3.chr3 110808663 1398 - 160674399 TAGTCAACTGAAGGTCTTTATCCCATCCATCTGGG----------ACTACACTCAGGTACTGGGGACCTATATCCAAGTGTCCAGAGCATGGATTTTTGAGGGGAAAATATGTCCTGGTATCT--TGCCGGGCATTTGCATGGGTAAAGAGAGGCTTGCTGCAAGCAAG-CAGTTTCAGAGAAGC-----TAAAATAAGCATTGAGCTGGG------GGTGTGGTCTGCATG--CATTTAGT--------------------------------GTAGCAGATAAACTA-----GCTGAGGCACCTTGACCTCAGAG----------TCAGA-----AAAGATTTGGGTAAATTTCCC------------ATAGGGCT--------TCTCATCAAGGAGATTACATT----------------GCAGTCCAGCCT-AAAATGTCCTCAGCCCGAATCCCAGATGGAGGACCCTCTGTGCTCTAGCTTTGTCCTG----------------TTACATTATGTTTTCA-TTTTTGTTCAGGTATTTCGACTCTCCTAGCTATAAAATCAATTAGTTTGGTTGCAATTTCTGAGCTTATTGTGGAATTCCTCTTATCAGCATGCATTCGTAATACAGGCTTTGGA-TGAAACA------GGTTTTCTAAGCTTATATTCACTATTACCCATTCAGATGTTGGCTGTTTACATACGGTGGCACAGGATTACTTTGTTTATAAAGAGCTAAGAGTCTATGGTAAATAA-AAACTGTTTTTTTTCCT--------------TTTTTCAAAACCATACAACATGTGCTTCTGACTGACTAAGAAGTCAGATATGGAAGCATGTGTGAACAATAATGTAAAT-CCAAGCCGACTGTTTGCTCTGGGACCTGTTTCTGCATAGTAATCACAACCCAATCCTAGCAGAGACATTCTGAATTTACAACACTGT---GGTACAGCAAAACAGAAAGAATGGTGGGA---AGTGGAG-----GCTGACTG-----GGAAGTGCTCAAATACATTCACTGTTTCTGAAACTCAATGACGATTTT-------------ATAAATGCAAAGCTACATAGAAAGTTTTTTTTTAATTACATTAATGTGCTTTGTGAATGGCTCTGAGGAAAA-TCATTTTGAGATTGGTCTTAC--TTTATTTTTAACTAAGAGAATACATTAAAAAAGAAATGGCAGCTATTTGTTTAAGAA-AATTAGTATTGAGAGTTATGAGAATTTTGAATCTTATTTTATGATTTCATTAAATACACATTAGGAACCCAGAAATTCTAGGTCCAAAATCAATACGTTTCTTCCAATTTTAAGAAGGCTTTTTTTGTAATTATGTTTTGGGTGCTGACTCCAAAGTTTCTGTCTGAGTATCAAAGAGCACATTTGCTTGCCTTAAATTAAACCACATCCTTCCCTACAAATGTTACCTTC-TTCGTTT---------------AGTAGAGTTTCTAGCAAAGCCTGTCAATATATGATATACCTTTAG-----AAAGGAA---------AATGTTCATGAGTTCTGTTCATGTCTTCCTTCTGAGTTTGGGTTGTCATGCTCTATTAA s rn2.chr2 112291381 1424 - 246339213 tagtcaactgaaagtctttattccatccatcttgg----------actacactcaggtactggggacctatatccaggtgtccagagcACGAATGTTTGAAGGCAAAGCCTGTCCTGGTGTCTCTTACCTGGCAGTTGCAGGAGTGAAGGG-GGCTTCCTGCAAGTGAG-CAGTTTAAGAGA--------CAAAATGAGCATTGAGCTGGG------GGTGTTGTCTGCGTG--CATTCAGT--------------------------------CTGGCAGATAAACTA-----GCTGAGACATCTTGACCTCAGGT----------TCAGA-----AAAGATTTGGGTAAATTTCCC------------ATGGGGCT--------TCTCATCAAGGAGATTACATT----------------CCAGTCCAGCCTAAAAATGTCCTCAGCCAGAATCCAAAATGGAGGAACCTCTGCACT---GTTTTGTCCAG----------------TCACA--GTGTTTTCA-TTTTTGTTCAGGTATTTCAACTCTCCTAGATATAAAATCGATATGTTTGTTTGCAATTTCTGAGTTTATTGTGGAATTCCTTCTATTGTCATGCATTAATGATACAGGCTTTAGA-TGAAATA-----CTGGCTTATAAGCGTATATTCACTATTATCCATTCAGATGCTGGCTGTGTAGGCACTGTGGCGCAGGATTACTTTGTTTATAAAGAACTAAGAGTCTATGGTAAATAG-AAACTGTTCTCTTTCTTCCTTTTCCTTTTTCTTTTTCAAAACCATACAATATGTGCTTCTGACTGACTGAGAAGTCAGATATGGAAGCATGTGGGAACAAT-ATGTAAAT-CCAAGCAGGCTGTTTGCGCTGGGATCTGTTTCTGCATAATAATCATAACCCAATCCTAGCAGAGATGTTCTGAATTTAAAACATTGT---GGTACAACAAAACAGAAAGAACAACGGAAAATAGTGTAG-----GCTGACTG-----TGAAGTGCTTAGATACGTTCACTGTTTCTGAAAATCAGAGCTGTTTTTTTTTATTTTTCTAATAAACTTGAAGCTACATAAAAAG-ATCTTTTTAATTATATCAATGTGGTTTGTGAACAG--CTGAGGAAAACTCATTTTCAGATTGGTCTTACTTTTTTTTTTTAACTGAAGGAATACATCGAAACAGAAATGTCAGCCATTTGTTTAAGAACAACTAGTATCGAGAGTTATGAGAACTTTGAATATTATTTTATGATGTCATTAAATACACTTTAGAAACCCAGAGTTTCTAGGT------TCAATATGTTCCTTCCAATTTTAAGAAGGC-TTCCTTGTAATTATGTCTTGGGTGCTGACACCGAAGCTTCTGTCTGAGCATCAGAGAGCACATTTGCTTGCCATAAATTAAACCACAGTCTTCCCTACAAATGTTACTGTC-TTCATTT---------------AATAGAGTTTCCAGGAAAGCCTGTCCATATACGACGT-CCTTTAG-----ACAGGAATGTGCTTGGGATGTTCGTGAGTTCTGTTCATGTCTTCCTCCTGAGTTTGGGATGGCATGCCTTATTCA a score=43097.000000 s hg15.chr4_random 396859 491 + 1219494 AGAGTGACTTGTCACTGCAAAGAC--ATGATGGTACAATGACAAAACATCAAAGAGCTGTTGAGTGGG-AAGTAGGTTTCTTTGATCTCAGGTCAGTATCTCCT------GCACTGCATTATGCTCCTCCCTTGTGTCAGTCTCCTGATTGGCTTTAACTCAACGTTTGGAGTGTTTCTGATTGCAACATAAGTAAGAATCTGAATGTCTACTCTCGTTTTTCCAACTTCTC----ACTTTTTGTTCATACCTTTTAATCTAAAGATGATTCAATTGTATTTCCTTTAGTATGAGCCTAGTCACAGGGAAGCAGTACATGGTATGTGAAGATATCATACCTAAGGTATGTGGGGTGTATTTAGAGCCAGTAAAAAGACCCAGTCTTACCTCCTCAGTTTTCTCCCACCTCT---GCCTAAAAATCACTTCAATTAAGCCTGTAGCAC------TGATTATTTTGAAGGGTA----TCATCCAAAGAAAA------AAGCAGATTT-----------TTTTCTTGCAGAGGTTGA s mm3.chr3 110810831 464 - 160674399 AGA---ACTTATCACTGTAAAGACCAGTGATGGAATGTTGAGGCAACATCAAAGAGCTGAGAGGTGGG-AAGTGGTTCTTTTTGATCTCTTGT-------TCCTATCAGGGCACTGGACTTTGCTACGCC--TGTGTCAAT------------------TCTGC-TTTGGAATGCTTCTAATTACAACATCAACAAGTACCC---------------TTTTCTTAGTCTCCAGGGAACTTTTCTCTTTTATCTAGTCAGTTAAAGACAACTCAGAAGTAATTCCTTCTAGGTAACTCTAGTGTCAGGGAGATGT----TTGTGTATGAAGTCATCTCACCCAAGGCAACTGAG--ATACTTAGAGCTGATTAAAACTATGAATGCTGTCT------TTAACTCTTCCTTGT---GCCAAGGAATTGCT----TCAATCCTGGAGCATCAGCACCCACCATGCTCAAAGGAA----CTGTCCTGAGCACACTGTGTCAATGAATTTCTGGTTGGTAGTTTTGTTGTATGTCTTTC s rn2.chr2 112292817 474 - 246339213 AGA---ACTTACCAGTGGAAAGACCAGCGATGGAATGTTGAGGCAAAATCAAAGAGCTGGGAGGTGGGGAAGTAGCTCTCTTTGATCTCTTGT-------TCCTAGAAGGGGCCTGGACTTTGCTACCCC--TGTGTCAATCCTCGG----------ACTCTGC-TTTGGAATGCTTCTAATTACAGCATAAACAAGTACCC---------------TTTTCTTAGTCTCCCAGAGACTTTTCTCTTATATCTGGTCAGTTAAAAACAATTCAGAGGTAATTCTTTCTAGGTGACTCTGGTGGCAGAGAGATGT----TTGCTTATGAAGTCACCATACCCAAGGCAACTGGG--ATACTTAGCACTGGTTAAAACCATGAATGCTGTCT------TTGACTCTTCATTGTCAAGCCAAGGAATTGCTTCAATCAATCCTGCAGCAT----------CATGTTCAGAGGCACTGTCTGTCCTAAGCATGCTGTGTCAATGCATTTCTGGTTGCTGGTTTTGTTGTACGTGTTTC a score=1203.000000 s hg15.chr4_random 397888 17 + 1219494 aagaagattaggtgatg s mm3.chr3 110811944 17 - 160674399 aaaaAAATTACCTCATG s rn2.chr2 112293308 17 - 246339213 AGAAAATTTACCGTGTA a score=216701.000000 s hg15.chr4_random 397905 2219 + 1219494 ctgtcttttttgtaactctatattcag-ctaagtggagatatattttctagaactgtagcagctgtcttggaatcatgaatgaaccc----------------------aagaa------aacagaacaagccagcacattgaatatcaaatagcagaaagatgggagacacctggtttgtgatggcattattgagctgctcaat-attcagtgttgaaaatgtcctatc-----actgtgtatctcctgttttgaaataataaacttcctttttttgacaa-ttttagccaagttctATTA----TTATATCCCACATGTTTCTAACAATCATAAATATTTCATTAT-TAAAATTATAGTAAGAATTAAAGGAAAT-----------------------------------------------------ATATGTGTAG------------CTCACTTGGCACTCAATATGGTTCAATAACTATTATCTTTATTTTTATTATGGTCCAAGACCTTTACATTCAAATGCTAGGTGAGATGTAACTATTATAGATGGT-ATTTTTT---ATATC------AGTAACACAGTCC----ACGTGTAAACTGTAAATTTGCC----------------------------CTCTT-------------AA-------------CTAAATGGGAGCCTACTTTGAAGCTTAAATTCTTTTGGATAGAGAATATGAGCTATAATTGATTAGTTTATTACAATTAAAATAACTTACCCAAATTAAAAATAAA---TACTAGACGATAATAAAAGAGGCACTATATTGTTACAAATGGTGGGCTGCTATGAGTCTCGTAGGAAATAGGCATTATTTTCAGTGAAGGTCTAACAACTCTCCTCAGTCTCATTCCCTTTGAAATATTTTCTATTTA-----ATTCACATACATTCA-----GATACTT----------ATTATGT---------------------------------------------------------------------AAAACCTATATGTGAACTGTTTATTCTCTTTG-------------------------TAAGTGTAA----------------------------------------------GTGAGTAAAGAAATGGTAAGCACATGCATTTTCAGAGATCAACTTTATAGCTAAGTATCTACTAGATGTTCTTAATCTCTATCATTTATTTCCTTTATTTTATGAAATTTTAGTTATTTTTTGATGAAAGTTGCTTTTGGAGAGAATACTTTGAACTTTTTTCTTTTTCTTGTAAAATTAAGCATCCCTCAATTT-TATAACACTGCTGTTAACTGTATACACTACAAATATCCTTGATTGCTCCTTGTTAAAAGTGTTTCAATTGATGGATGATAAACCTAAAGTGAATAACTTC-TTACAAATTCTAAGTAAATAAGAAATTGGACCATGAAGTTGC----------ATGGTATTTACTAATAA---TTTTTA-TGCATATTTGATGCCGATACT---TATCACTTATCCAAGCTTAACATACTATATTaaaacctttcaaaaagtttcaaaaaagtttcaaaaactttcaaaaagtttTAATCTTACCTAATATATCCTAAAATA--TCATTGACTTGGTTTTTGTTATTTAAGTGGATGCTCATATTTCTGAATGATAACAGTTCTCCTTTACATTATAAAAACTTTTTTCTTGAGAGTAGATGCCAGTCTATGAACAGTGTGATACTCCTAGTTGGAACAACAAAAAATGGTTGGATAAATTAGCTATTTATTAAGA-GCATCCAGAAGTATCATACATGAAGTGTATTT-TAACATGAACACAAAGA---GTCAGACATTGGCAATAAACTTTCTGTCACACTTTGATTTGTATTCTTAATTCTGAGCTGGAAGTATTTAAGGATAAAATAAACTGTATTCTCAAGATTTGCTTTGCCGCATGATAAAAGAATGATAA---ACGAAGGAATGTTGCCA-TGAAGAAAA-------CATAAAGCAAACTTGTGATTTATATGTACTTCACAAATATGAAACACTCAAC-----------------------------------------------------------------------------------------CAGAGATTCCTAAACATATACATATG-----------CACAAG--------------TAT----------------------ACAAATAAATA----TTATGACATTGGAGATATTTTCACCTTCGGAAATAGCTCTTCCAAAAGTATTATTAGATCTCTTTTT-CTAAAA-----AGCGTTTTCCTTGCTGATGGAAACTGTACTGCCT-AATGGATAAACTGGGT--GATAGCTGCTATAAAACCTTAGATCCAGAGGGAAGCTTAATTTCCCTTCTCTTTCTGTGAATTTAACTAAACAGAGAAG-TTTTCTTATATCACTTCTACTT-ATATTCTTGAATTAATGAGGTCTTAGCTCTGGCCCTTTTTCTGGTAATCTTCTCCATGTGCCAATTATCTCTAAACTCCCTGGAGGAGAAAAATCTCACAGCACATAAGATTTAAGTACCATCATGTCAGAAGTTTCACCACTTCACTCAGTAGATTACTCTTCTTAGCAATGtctcaaaatttaatgagcataggaatcaccagaggacctta s mm3.chr3 110812174 2540 - 160674399 CTCTCTGTTTTGTTACTCTATATTTAATTTGAGTGAAGTTCTGTT----------------------CTG-----ATGTATGTGATG----------------------AAGAAACATTCAATAAGACAACCCAGCATCAT-TACATT-ACCAGTAGAAAGACTGGTGACCCTCAGCTCATGATGGGATCACTGAG--GCCTGGTTATGTAACATTGGAAGCATTTTAGCTTTTGTTTTTATATCATGTGGTATGAAATGAAAATGTCAC---TTTTAACAGCTTTTGGCCACATACTATTATTATTTATATC--AACCTATTTTAATGATGATAAACATTTCATTATGTATTACTATAGAGAGaaataaattatatgaatattataatatatgttatatatgtgtgtatatttgtgtgtgtgtgtgtgtgtgtgtgtgt------------TCCACTTGA-ATGTAAAGGTTTTCCATAATTGTGA--CTTATTTTTATTATATTCTGAGAA--TTAAATTTCATTACTAGATAAGATCCTGCTATTTTAGGTGATTATTTTTTC--ATATTTTGCTAAGCAAACCATTTTCATAACTTTTGAAATATGCAGTTGTTACAATGGTTTACTTCATTTGAACAGTTATTTTT-------------AAGATGATTTATGTCTTAACTGACTATCTGCTT--AAGCTTAAAGTACTCTGGATAGACAACACCTGGTATAATTGGCCAATTTACCGTAATTAAATTAATTTATGCAAATATGAAAGAAAATGTACTTGGTGACAATAAGAGAGGTCTAATGCACACATCAATGGTAGCCCATCCTGTGCCT-ATGAGAAACAGTCATTA-TTTCAATAAAGCTTTAGATCATCTCCTCAGCTTTGTTCCCTTTGAAATATTAGATACATATAAATGTACAAACACTTGCACAAATGACATTTAGCAGTGGG-ACTGTGTTCTGTCATTAGGTGATTGTGTATTTACACAGTGTAAGATCACTGTAATTTTACTAGGTTATAGTCCTAGGACACTACTACAATAAATGTCCACCTCCGTTGAATAGAGCAACCCCAGTCGAGTTTATGAGTATAGTCCTAGTACATCTGATGCTTGTTCATACACAGCATTGCTCTCCCTTGTGAGTAGCAAAGAGCTAAGCATCTGGATTTCCAGAAAACAGCCTCATAGCTAGGGATCTACTCCATTTACAGTCCATTAATCATTTGTTTCCTTGACTTTATGAAATCTTAATTATTCTTA-ATAGAACCTGTTTTTAAAAAGA----TACCAAC-TTTATCTTTCTAATGAAAAATTAAGT-TTCTATAATTT-GATAATCCTGCTTTTAGC----TATACTGCAAAT-TTCTAGATTAAACTTCCTTTAAAGAAACCCAAGTAGTTGTTGATAACCAGGAAGTAAGTAATTTT-GTACAAATATTAAGAAAATAAGCCACTGGATCCTGGTGTTGCCAACAATATAATTATATTCAGTAATCGTGATTTCTATTACATTATTCATATTAATATTCAATAATACATAT-TAAGCTCAAC--ATTATATTAAATATCTC---------------------------CCTTCCAGATAGTTTATTCTAATTTAAAGCACCATGAAAAAAATAATTGCCT-GAATTTCCCTACTAACGAGAATGTAT----------------ACAGTTCTCCTTTGTAATCTTTGAACTTTTATCTTGAGAATAGTCAGTAATCTATGAGGAGTGGAATGACCAAAGTTGGAATGCT--CAAATGCTTAGCCAAATAAAACATTTATTAAGGTGCATCCAGAAGGAGTATTTTTAAAGTAGATTT-AAAGATAAGCAAAGACA-----------------GTACACTTTCTC-CTTCCTTTCACATACTCACTTAGTCCTGAGCAAGAAGTGGTTAACTATAAATGAAAGTA---ACTGAAAATTTAATTTCACACCCAATGAAGGAATGTCAAAGGATGAAGATATGTTGCCAATGAATAAAAGCAACAGCATAAGG-AACTTTATAATGTACATGTGCCTGTCAAATGCAATACA--TAGCAgtatgtgtataactgtatgtgtatatgatgtatgtatatatggtgtatgtgtacattatgcatatgtatgtgatgtatacgtatatgatgtatatgtatatgtatatgcatatgatgtgtatgtatatagaatatgtacttaggatatgtatatgtatgtgCCTATATACACATATACATACAGGTAACAATACTGGAAATGTTCT-GCTTTCAGAAATTACTGTCAGAAAAG---AACTAGATCCTTTTTTTCTGAAAA----AATGTTTTCC-TGTAAGTAAAAACTATATGCCCTAAATGGATAAACAGAATAAGATATCTAGAATAAGATATTGAATCTAAAGGGAAGCTTAATTTCCCTCTTCAGTATG------AAACTAATCAGAGAAATTTTTCTTATATCAATTCT-CTTAATGCTCTTGAATTAATAATGTCGAAGCTCAGGCCCTTCTTACAGCAATCATCTCCATGTGCTGATTTTCTCTACACTCTCTAGAGGAG--TGTCCTCCCAGA-CAT-AGAATTAATTACCATCCTGTTAGAATGCCTATCA-TGCCGACAGTAGATGACTCTGTAGAAGCATATCTCTGACGTCAATGTACATGGCACCCAACCAAAGCTCCTA s rn2.chr2 112293538 2548 - 246339213 CTTTCTGCTTTGTTACTCTATATTTAATCTATGTGAAGTTCTGTTTCTTGTAGCTATA-CAGCTATCCTG-----ATGTATATGATGTTCTGATGTCCAGATGATGATTAAGAAACATTTAATAGGATAACCCAGCATCTT-CATAGC-ATCAGCAGCAAGATGGCTGACGCTCAGCTCATGACGGGATCACTGAT--GTCTGGT-ATGCAGCACTGGAAGTGTGCTAGCTTTTGCTTTCGTATCATGTGATATGAAAGGAAAGC-TCAC---TCTTAACAGGTTTTGTCCACATTCTATTACTATTTATATCTTAACCTGTGTTAGTGATGATAAGCATTTCAGTGCATATTACTATAGAGAGAAATAAATTACAT-AATAGTATAAGGCATGTtataaatat-tatatatatatgtgtgtgtatatgtgtatatatatacatatatataATCCATTTGA-ATGCAAAGGTTTTCCATAATTATGA--CTTAATTTTATTACATTCTAAGAA--TTACATTTCATTGCTAGATATGATACTGCTATTTTAGGTGATCATTTTTTTTTACATTTTGCTAAACAAACCATTTTCTTAACTTTTAAAATATGCAGTTGTTAAAATGGTTTACTTCATTTGAAAAGCtattttttatttattattttaaGATGCTTTATGGCTTCACTGAGAATCTGCTT--GAGCTTAAAGTACTCTGGATAGACAACATCTGGCATAATTGGCCAATTTATCATAATTAAATTAATTTATCCAAATATGAAAGAAAATGTACTTGGTGACAGTGAGAGAGGTGTAATGCACACATCAATGGTAGCCCGTTATGTGCCTTACCAGAGACAGCCATTA-TTTCATTAAAGCTTCAGCTCCTCTTCTCAGGTTTGTTCCCTTTGAAATATTACATACATATAAATATACAAACACATGCACAAATGACATTTGATAGTGGGTGCTATGTTCTGTCGTTAGGTGATTGTATATTTACACAAAGAAAGATTGCTGTAATTTCACTAGGCTACCGTCTTAGAACACCACCGCGATAAATGTCCACCTCTGTGGATTAGAGCAGCCCCACTTGAGATGATGGGTATAGTCCAGATACATCTGATGCTTGCTCATACACAACATTGCTCTCCTTTGTGAGTAGCAAAGGGGTGAGCATCTGTATTTCCGGAAATCAGCTTCAAAGCTAGGGACACTCTCCATTTACAGCCCATGAATCATTTGTTTCCTTGACTTGATGAAATCTTAATTATTTTCC-ATAGAAGCTGTTTTTGAAAGGA----TATCAAC-TTCATCTTTCTCATGAAAAATTAAGT-TCCTATAATTTTGATAATACTGTTTTTAAC----TATACTGTAAAT-TTCTCGATTAAATTTCCCTTAAAGAATCCCAAGTAGTTGTTGAAAATTTTG---TAAGTAATTTTTGTACAAATATTAAGAAAATTAGCAACAGGATTCTGGTGTTGCCAACAATATAATTATATTTCATAATAGTG-TTTCTATTACATTATTCATGTCAATATTCAATAATACATAT-TAAGCTCA-----TTATATTAAATATTTC---------------------------TGTTCCAGATGCTTCATTCTAATTTAAAGCACCATGAAAAAA-TAATTGCCTCGATTTTCACCCCTTAAGAGGATGTGC----------------ATAGTTATCCTCTGTAATCTTTGAACTTTTATCTTGAGAATGGTCAGTGGTCTATAAGGAGTGGAATGCCCAAAGTTGGAATGCT--CAAATGCTTAGCCAAATAAAACATTTAGTAAGGTGCATCCAAAAGGTGTATTTATAAGGTTGATTTTAAAGATAAGCACAGACAATACCCAAGAACAGAGAGTACACTTTCTG-CATGCCC-CACTCATTTACTTAGTCCTGAGCAAGACGTGGCTAAGTACAAAAGAAAGCA---ACA-----------CTCTCACTCAGTGAAGGAATGGCGAAGGATGAAGATATGTTGTGAGTGAATAAAAACAACAGCATAAGG-AACTTTATAATGTTCATGTGCCTATCAGATACGAGGCA--TAGA---------------gtatatgtatatg----------------tgcatgtgtacgtt---tgtgtgtatatgatgtgta---------tgtgtatgtgtatgtgtatgcatatg-----------tacaggatatgtatatagg-tatgcatatgtatat----------acatatgcatatAGGTCATGACACTGGAAATGTTTT-GCTTTCGGAAATTTCTGTCAAAAAAG---AGCAAGATCCCTTTTT-CTGAAAAGAAAAATGCTTTCC-TG-AAGTAAACACTATATGCCCTAAATGGATAAACAGGAT--GATGTCTAGAATAAGATACTGAATCCAAAGGGAAGCTTCATTTCCTTCCCCACTATG------AAATTAATCAGAGAAAATTTTCTTATATCAATTCTACTTAATGCTCTTGAATTAATAATGTCTAAGCTCAGGCCCTTCTTACAGTAATCATCTCCATGTGCCGATTTTCTCTACACTCCCTGGAAGAG--TGTTTTCCCAGC-CAT-AGAATTAATTACCATCCTGTTAGGACACCTCTCACTGCTGACAATAGATGACCCTGTATAAACATATCTCTGACATCAATGTACATGGAAACCACCCAAAGATCTTA a score=14962.000000 s hg15.chr4_random 450551 140 + 1219494 cagcctggcctcctgactaccaCCCTTCCAATAATGGGCCCACCTATTGGGTTGCACATTCTAACTCCTTGGTTACATAAACTGGGAGGGCTTATAGGGAACATCCCAATCCTGGAAAGAAAAATCTTAGTATGACAGAT s mm3.chr5 64930815 118 + 149719773 CAGCCTGGCCT--------GCACCC-------ACTGAGACATCTTACTGG------CCCTCTAGCTCCATAATTGTATAAACTGGAAGAACCTGAGGGGGATAT-CTGGGCCCAGAAAGAGAACAATTAGTTTGACAAAT s rn2.chr14 64835100 118 - 107821284 CAGCCTGGCCT--------GCACCC-------ACTGAGCCATCTTGCTAG------CCCTCTAACTCCATAACTACATAAACCAGGAGAATTGGAGCGGAATAT-CTGGGCCCAGAAAGAAAATGCTTAGTTTGACAAAT a score=44761.000000 s hg15.chr4_random 451008 519 + 1219494 TCTTTAACT-TCCTTTCAAGTCACCTGCACGTTCCTTCCAGAGTGTGGCGACCATCGGCCGGCTCTCCTCTCTCTGTCTTTGCTGCT----CCTTCGCATCCCCACCCC--------GGCCTCCATCTTTTTCTGCCGT--CCTTCTCTGCCTTTCCTGCAAGGTTGGCCTCCATGGTGAAGGTGCTGTATCAGATTCCCTTTGTCCCCGGAGGAGGCTCAAGCCTTGCGGATGACCCAGAGTAGAACAGCTAGGAAACCAACACGCCTCCCTCTTGATACTCTTGACACC----AGTCAGAAGAAACTGCTGTGTGTTTTAGGCTCGCCTAGTC-ACTTTCCTCCATTTTAACAGACTTCCCCCCAggaagaaaggggagggggccgaggggaggaaggaaaggagtggggaaggggggaagAAAACCCCCATCCTGCCACAACACAGAGCCTCGGATTTCGCTCTGCTTCGATGCTAAGGTCTCTGATTCTCCCTGGTTCTTTCTGAAGCTTGGGGGTGGGGTAGGGAGAACACGTG s mm3.chr5 64930933 447 + 149719773 CCCTTGATC--------AAATGACCTCTAAGT---TTCTTGAAGGT------------------------------TCTTTGCTCCTTTATCTTTCTTGTCCCCACCTATGAGTGGGGACAGGAACCTCGTACTGCTTTCACTTTCTC---CAATCCAATGGGATGAAGCTCCAGCTGCAAAGAAATCCGTGTCAGTCCTTTGGTCCTCAGAGGAGACTCAAGCCCTTC------------------CCTTCA-------AACTCACCTAAGTTTCA------TTGGTTTCTCGAGGTCAAA--------CTGTAGCTGCTAGGCT----TAGCATACCTGACTCCATCTTGCCAGACTTCCTCCCAGGAAGGGTTGGGAGGAGGACT-GGGGAGGAAGGAAAGGAGGGGGCCTGGGGCAAAGAAAACCCCCATCCTACCACAACACAGGGTTTCGGATTGT-CTCTGCTTTGATGCTGCCTTCTTTGATTCTCCCTGGTTGTTTTCAAG---TTGGGGTGGGGTAAGGAGAGCTTGTG s rn2.chr14 64835218 456 - 107821284 ACTTTGATCTTCTTGTCAAATGGCCT----------TCCTGAAGTT------------------------------TCTTTGCTCCTTTACTTTTCTTGTCCCCACATATTGGTGGGGACAAGTACCT------GCTTTCACTTTCTCTGCCCTTCCAATGGGATGAAGCCCCAGCTGGAGCGAAAGCAAGCATATTCCTTTGGTCTTCAGAGGAGACTCAAGCTCTTTAG------------CAAACATCCAGG-GACAAACTCATCCAAGTTTCG------TTGATGTCTCTGAGTCAAA--------CTGTGGCTGCTAGGCT----TAGAA-ACCTGACTCCATCTTGCCACACTTCCTCCCAGGAAGGGTTGGGAGGAGGGTT-GTGGAGGAAGGAAAGGAGGAGGCCTGGGGCAAAGAAAACCCCCATCCTGCCACAACACAGAGTTTTGGATTGT-CTCTGCTTTGATGCTACTGTCTTTGATTCTCCCTGGTTGTTTTCAAG---TTGGGGTGTTGTAAGGAGAGCTTGTG a score=32854.000000 s hg15.chr4_random 454750 315 + 1219494 TCTCAAGTGATTGCTGTGACACCATGACCATGTGTTATGATTATATAATTGAATTGGAATAGTCTAGT----CATCAATAGAATGTCATGTTCACCATGATAGCACTGAAAAGAAAAATTGCCCCAGGCCTGGTCTGGGACAGACCCTTTTTTGGATGTGATGTAATTCACAACTTCCTTCTGGGGAGAAACTCAGTGCTCCTGATAAAATGCCCAAGCTGTTTTCTGATGGACTTTGATGGGATTAAGGCTTGTTCTGGGAAACAAGTCACACCTACCCTGCTCCCTGACCCCCTGCAGACTTTCAGACAACAGCCCA s mm3.chr5 64935267 288 + 149719773 TCTTGAGTGAT---TATGACATCATG-TTATGA-------TTACATAATGAAATACCAATAGCTGAATAACTCATTAATCAAGTGTGATAGTTACTGCAATAGCATTGAAAAGAAAAATTGTCCCAGTATGAGACTAGGAGATCCCCTGTTTTGTGAGGAATGTAATTGATGACTTTCTTCTGGGAAGGAAACCCTTGCTCCCAATGAAATGCCT-GACTATTTTCTGACAGAGAGCAATGGCATGAAGCCTTGTTCTGGGAAGCCCATTGTACCAG-------------------GCAGATTGCCAGACCATAGTCCA s rn2.chr14 64840019 272 - 107821284 TCTTGAGTGAG---TGTGACACCATG-TTATGAGCTATGATTACATAATGAAA-AGCAATAGCTGAATAACCCATTAATCAAGTGTGATAGTTACTGCAATAGCATTGAAAAGATAACTTGTCTCTG---------------------GTTTAGTGAGAAAGGAAATTGGTAACTTTCCTTTGGGAAAGTAACCATTGCTCCCAGTGGAATGCCT-GGCTATTTTCTGACAGAGAGCAATGGCCTGAAGCCTT-TTCTGGGAAGCCCATTGGACCAG-------------------GTGGACTGCCAGACCATAGTCTA a score=4837.000000 s hg15.chr4_random 455065 32 + 1219494 GTTGACCT--TTAACCatatat---atatatatatat s mm3.chr7 105258768 37 + 134401573 TTGGATCTCCTTAACCAGATGTTCAATTTACATGTAT s rn2.chr1 166059642 37 + 276301343 TTGGATCTCCTTAACCAGATGTTCAATTTACATGTAT a score=22071.000000 s hg15.chr4_random 455471 225 + 1219494 GACTGTCTGGCCATTCTCTTTTCCTATAAAATGCCCTATC-AAGTGTGAATCTTGGAAATAGACTCCTAGAGGCCATTTCACTTGAAGAAAGGCTGCAATACAGTTACAACACGTGGTCATAACTAAAGAGAGGGAAGGAGAGAATTCTGATGGGTTGATGGAGTTGGTGGGACTCAgtgaccctgagaaa--gctttatagtatttctgagtctcagttttgtcatc s mm3.chr5 64935555 196 + 149719773 CGCTGCCTGGCC-TTCCCTTCTCCTACAATATGCTCTTGCAAAGTGTAAATCTTTGAACTGGATTCCCAGAGGCTCCCCTCCCTGCAGAATGACTGCAACACAGTGA-------TGGTC---ACCAGAAAGGAGGGAG-AGCTCGTTCTGATGGGTTGGTGGAGTGAGTGAG--TCAGGGACCCTGAGAAAGTGTTGTGTGATAT------------------TCATa s rn2.chr14 64840291 195 - 107821284 CATTGCCTGACC-TTTTGTTCTCCCACAGTTCACTCTTGCAAAGTGAAGCTCTTTGAAACGGATTCCCACAGGCCCTGTCCAATTCAGAATGACTGTAATACAGCGA-------TGGTC---ACCAAAAAGGAGGGAGAAGCTCAATCTGATGGGCTGGCAGAGTGAGTGAG--CCAGGGAGCTTGAGAAA--GCTTCATGATAT------------------TCATG a score=18115.000000 s hg15.chr4_random 455699 270 + 1219494 gaaatggagacaa---------------------------------------------------------------------------taatacc-tcaggaggtggctgtgagag-tgaatatggaatggaaagggcgtggta-tctgcccagcatgtattagtgcaccctacatgcacatgatgatgattatGATGGTGATGACTATGGAC--------------CCCTGATCTCtgaaagaattaagaatatgccatccaaaacatgcc-attctggcatattgact-tttaagttaaaggtata-tggaaaacagtgggtgca--aggtcactccgacctctg-tgctgtttcttaaaagcagg s mm3.chr5 64935950 325 + 149719773 gagagagagaggaagaggaagaagaagaagaggaggaggaggaggaggaggaggaggaAAAACAGACCAATAACAGGAACCCAAACCCCAAAACC-TCAGGAAGAGGCAGTATGAATTAAATGTTGGGTGAGAACAGCTTGGTGCTGTGCCCAGTTCCCATCAGTGTACCAT------------------------CGATGGTCACTATGACA--------------ACCTGGACTCTg---gagtcaaatgcatgcctcccaagatctgctactctcggtaggttgactgcttaagcaaaaggtttcttggaaaacagccgaggcatgaggacagcttgtccccagataccttttc-taaaagcaag s rn2.chr14 64840661 287 - 107821284 ---aaaaagataaaATTAAAAAATAAAAATAATAGGAG------------------------------------------------CCTAAAACCATCAGGAAGAGGCAGTGAGAATTAAATGCTGGATGAGAA-GGCTGGATGCTCTGCCCAGAGCCTGTCACTGTACCAC------------------------CAATGGTGACTATGACAGCAAGATGAAGGCCACCTGGACTCTG---GAttcaaatgcatgcctcccaaaagctgcc-ctctcagtaggttgactgtttaagcagaaggtttcttggaaaacagcagaggcaggaggatggctcatccctagatgctgtttc-taaaagcagg a score=8063.000000 s hg15.chr4_random 456277 126 + 1219494 agatgaaattcgagtgtgaaagacacaacatccttatctttgaggttgagaagtagagaccaggag-------------tattc---------tgcacagaccttgttcaaataactcttatcttttaagcctctctacataatttag s mm3.chr5 64936275 127 + 149719773 aggtaaagttcccacatggaaaatgCAAAGACCCAGTCTAGCCG--TGAGAAGTTAGGTCTGGGGA----GCGCTGACAGACTT---------TAAGTGGGCTTTGTTT-TGTCGCTGTTATTTT-----TCTTCCCACAGAAGCTAG s rn2.chr14 64840948 138 - 107821284 aggtaaagctcctgcatggaagatgCAAAGTCCCAATCTAGCAG--CGAGAAGTCAGGACTGGGGAGTGGGCACTGACAGACTTCGCTAAGACTGAGTGGGTTTTGTTT---TTGTTGCTATTTC-----CCTGCTCACAGAATCTGG a score=5376.000000 s hg15.chr4_random 456403 276 + 1219494 ttgcttcttcacaacttactactcttggt-----ccaatccagtatatattaataagtaactgactctagctgcttctttgggcgtcttcatttccttagcagggctcccgtgccatgtaaaacttatatgaaataaagttgtatgcttttctcctgttaatcgatcttacatcaatttagcctttgtgcccagctgagaccctaagagcatggaagtggatggagttttgctgtccttacaTCTCCT---CAAGTAGAGTCCTGGAGTTCCAGGGTA-----------TTACCg s mm3.chr5 64936402 284 + 149719773 CCGTTTCTTTACAGCTCACTACTTCTGTTGTTTCTTAACCCAGCTCA-GTGGATACATGACTAACCCCAACTGCTAAC---GCCAACGtcatgtgctgatggggactctaggaccacat--aactcacaataaacgcatttgtatgctttgctcttgtaaacctctcctaggctagcttagctccagggctcagctgagaccctaaggggatagaATAGGAGGCA----TGCCAACC-TGCGTTTCCTTGCCCAGAAGAGTCTGAAAGTCCTAGGTTGGCAGTTGATTTCCATCA a score=51886.000000 s hg15.chr4_random 457801 1041 + 1219494 ---GCCTGGGAAAGGGGTCAA-----GCAGGTGCCTAGTGCCTGAGGGCGAGCAGGGGCTGCCTGAAGCGAGAAAGTCAGAGGGCTTGCCTTTGCGGCAACACTGCCAGTTCCCACAGGGTCGAAGCTCCTCCTGAGTAGTGGGCAGGGAAGAAGCCAGCCTGGGCCTGGGCTCCTTGGGGAGACAGGACTAACGCTGGAGCCTGGGCCACTGCAGGCCTGTGATCTGGAAC-CCAGCAAAGCCTCATCAC--CCTGCAGCTGTGGGAGCAGGCAGAGCCCTCCTGTGGTTTTAACTCTGTGGCTGTCACTCAGGGACCATTTATCGGCTGTTCTTTTTCACAACATTTCTGTTAGCTTGAGGCTTGGGCCGAG---AGAAAAGAGGCTGCTGAAAACCGTCTGCGTCTG--TTTTCTTCATGCTATTGG---------TAGGAGAAACA--CACTTGTCACATACTGAGTCATTTTTCTGCTTCAACCTCAATCTACTTTCTCTGAAAAAGTGAATCCATGTGGAAGAACTTATgggagagggatgagggagagagggaggagcagagggaagggagagggaggagggagaTGGCAGCCTGTCCAGTGTTTCTAGCCTGCATCATATTGTGGAAACTTGACAAGTCTAATTCTCTGCCATGGCGAGGGTGAAGGGAAGAGGCGGAGGCAGAAGAGAAAGAGCAGAGCCTTAGGCAGGTGGTAGGTACAGcgctgccagcctgcaggat-cctttgtgagagtcagaaaatggt-----gcctgctctgcctgcacaccgccctatgcca--------gcccacagagttttggcaagcccagcacagcta-gatttcagtctccactgtcccctctgc-------cttgttcagtg-aacggcctgtgcaactgtgatcagcagccctgACTGGAGGAAGACTCATTCCAAATGCTGTGGCAGATG-AAGGCTCA--CAAGGAACTGAAATAAGAAGTGGTAAAACTGCCCTCGGTTATGGCTACAGTATTCGATGAGTGTAAAGGTACAGTCCATTTCCAGAAAGCCTGACTATGAGGCCATCACTCTTACT s mm3.chr5 64936897 870 + 149719773 GGATCCAGGGAAGGGCATCTGTAGCTTCAGGTGCTCACT-CTTAGGGATAAGGATGGGGTTCCCTCCCCCAG-----CTCCAGGCTTGATGTGGAGATGGCATCCACATTTTTTTTGCTTTCAAAGTCCTTCCTG--------------------------------TGGACT----ATGGAGGGATAGCTAA-GTCATAGAGCAGGCCCCAGCAGGGATATGTTCTTAGAGGCCTACCAAGTCTGCCCGCCACCTGCTGCAG-TGGAGAAGGCAGAACCCACTTGTGGCTTTGACTGTGCAGCTGTGGCTCAGGTA-TAGTTCTGGGCTGTCCTT----------------TGAGCTCGTGGTTGGGGCTGAAGGGGGGAGGGGGGCTGCTACACTCCACTTGAGCCCGTCTCTTCTCTTTGCCTTGAGTGAGGAGTGTGTGAGACACT--CA-----CACTTGCAGAGC-------------------------------------AGAGTGAGTGTGTG-AGAGGC---TATGAG------------------GGGAGGA------------------GATGCAGCAGGTGGC-----------TGTTCCTCAGCTCTG-----------------------------TCCCTACTGT------GGTGAACGGAATAAGAAAACAACAACAACCAAAAACA-----TCAGGCCCATAGCA-----AGCTTcgctggcttatggggcaccttcatgagaattagaaaatgtcaaggtacctactctgggtac----cttgcttggccagtgaaggtgcccagag---cttggcaggctcagtacaagcatggcttcagtctgcactgtcttttctgcctcttgtcttattcagtg-agcagcccacacagtggtgactggcagtcctgAT--------GACTGATCTCAAACACTAAGGAAGAAAAAAGGCATAAGTGAAGAACTAAGTCGAGG----GGGTGTCTCCTCTTGGTTATGGCTGCAGTGCCCGATGG--ATAAAGGTAAAG-AGAACTCTAGAAAGTGTTGCTGTTAGACGACTACttttatt s rn2.chr14 64841088 787 - 107821284 GGATTCAGGGAAGGACATCTATAGCTTCAGGTGCTCAGC-CCTAGAGGTAAGGATGGG-TCCCCTCCCCCAG-----CTGCAGGCTTGATGTGGAAACGGCACCCACATTTGCAT-GCTTTCAAAGTCCCTCCTG--------------------------------TGGACT------GGAGAGATGGCTGA-GTTACAGACCAGGCCACAGCAGA----------------CCTGCCAAGCCTGCCCACCTCCTGCTGCAG-GGGAGAAGACAGAACCCACTTGTGGGCTTGACTCTGCAGCTGTGGCTCAGGTA-TAGTTCCGGGCAGTCCTT----------------TGAGCTGGAGACTGGGCTTGAA-GAGGAAGGGAGGCTGCAACACTCTGCTTGAGCCTGTCTCTTCCTTTTGCC--------------CATGAGTCACTCACA-----CACTTACAGAGC-------------------------------------AGGGCGAGTGCATT-GGAGGAAGGCATGA-------------------GGGAGGA------------------GATGCAGGAGGTGGC-----------CATTTCTCAGCTGTG-----------------------------TCCCCACCGT------GGTGAAAGGAATAAGGGAG-----------AAAAGCA-----TCAGGCCTGTGGTG-----AGCTTTgctggcctgtagggcacctttgtgagcattggtaaatgac-----acccaccctgggtac--------cttcgccagggaaggtgcc-------------caggctcagcacaggcacggtctcagtctgtacggtcttttctgtctagagtcttgttcagtgaagcagcctgcacagcggtgactggtagtcctgGT--------GACTGGTCTCAATGCTTAAG--------AAGGGACAGGTGAAGACCTTAGTCGAGGA---GGATATATCGGCTTGGTTATGGCTACAGTTCACATTGG--ATAAAGGTAAAG-AAAACTCCAGAA----------------GACTACTTCTCTT a score=7261.000000 s hg15.chr4_random 472776 35 + 1219494 CTGTAAATTTTTCCTCCACTTTCTAATTTTTCTTA s mm3.chr15 7587985 35 - 104111694 CTGCCTATTTTTCTTCCACTTTCTAACCTTTCTCA s rn2.chr7 15939820 35 - 139049774 CTGCCTATTTCTCTTCCACTTTCTAACTCTTCTCA a score=13503.000000 s hg15.chr4_random 475303 154 + 1219494 ATTTCTTATCTTGTTCAGAACCCAGGTAGGGAAGAGAAATGCTATTTATTGGGCAGTTACCTCAAAGGACTCAATGGTGCTATGATTAGGGTCTATATGT----------Gcacacacaca--cacacaca---cataca---cCTTCTTTACCCCA--CTGTAGCTTCATTCC s mm3.chr5 64939731 161 + 149719773 ATTTCTTAATCTCTGCAGAATATGGGTGAAGAACAAAAATGCAGCTTAGTGGGAGAGTGGCTCCGAGACCTCTGTGTTGGAATCGTTGGGTTTTATGCAC----------GCATACAGACAGCTACATTCA---CACCCAGAGCCCTATCCACTGTACCCTGTAGCCTGCTTCC s rn2.chr14 42910336 173 + 107821284 ATTTCTTATTCTGTTCAGGGTATGGGTGAGGAACTAAAATTCACCTTAGTGGGACTGTGGCTCTGAGGCCTCCATGTCGGAATCCTTCGGATTTATGCACACATGCAAGTGCACATAGACA-TTACATTCAGCTCAGTGAGAGCCCTGTCCACCATACCCTTTAACATGCTTCC a score=30636.000000 s hg15.chr4_random 475821 384 + 1219494 CTTTCTTAGTTAGGTTAAGGGCTTGTGTTTCCCAGGAGAAAACGGGTCTGATTTCAAAGGACTCTTTAGGCTGCCTCCTGGGTCTCAGAGTTTCATGAGTTTATTTCCCTAAAGGGTCCTAA--GCCATA-TGGGGTGCACACC-TGGTGGGAGCTGGGACACACGGGAATGAAGAGCTGCTACCCTGCCCTCAGGCTGCTTCCCTCCCAAGGGAAACACTATGCCAAGACAGGGAAGCTAGG----------AAGTGCCCTGATGGTGCCAGGGCCCAGGCTGAGGAGAACTAGGTCCTGAGGGTCTTAGCGACAGGCCAGGAAT-----------------GAAAACG-----------------------------TGACGAGTGCCCCTCCCATTTCTTTACATGAGGCCTCCATCTCCTAGCGTCTGTTTTTTTTTCCT s mm3.chr5 64940107 412 + 149719773 CTTACTTTCTTAAACCAAGGA--TGTGTATTCC--GGGAAGATGGGCTTGATTTTATATGGTTCCTCAGGCCGCCTTCTAGGTGGCAGGGTTTCCTGG--TTCATTCACAAGAGGCTCCCCAGGGCCATCTTTGGGTTGGCACTGTGCTGTGTGCTAAGGCA-AC-AGAAGGTGGAGACACATTCGGGTCCTCATGCTAC-CAGCTCCTGAGAGAG---------------AGGGAAGGTCGGAGCTTGAGAAAGGTTCCCTGATGGTTCGAGGGCCAAGGAAGAACATGGCCAG-------GATTCTCAGCGAACAGCTAGGaaaacaaaacagaacaaaacaaaaacaaacaaacaaaaagccaaaccaaaacaCACCAATAAGTGGCCTTTC-ATTTTTCTAAATGAGTTTCTCCTTTCCTGGTAAAttttctttttttct s rn2.chr14 42910717 371 + 107821284 CTTACTTTCTTAAACCAAGGG--TGTGCATCCCAGGAGAAAATGGCCTTGACTTCATATGGTTCCTCAGGCTTCCTTCTAGGTGTCAGGGTTTCCTGG--TTCGTTCACAAGAGGCTTCCCAGGGCCATCTTGGTGTTGGCACTGT------TGCTAAGGCA-AC-AGAATGTGGAAACACATTCAGGCCCTCATGTTA--CAGCTCCTGAGAGGA---------------AGGGAAGCTCAGAGCTTAAGAGAGGCTCCCTGGTGGTATGAGGGCCAAGGAAGAAAAAGACCAG-------GATTCTCAGTGAACAGCTAGGAAAGCAAGATGA--------AAAAACAAAC---CCAAAACCCAAAC-------CACTAATATATGGCCCTTC---CATTCTAAATGAGTTTCTCCTTTCCTGGTG---------------- a score=12655.000000 s hg15.chr4_random 476205 242 + 1219494 GGCAACCTTCAGTGTCTGTTGTGTTGTGAGCACAGCTTGAGGGCAGTCATCCACCTCTTCACATATTTTCCATCCGTCAGCTGTGAGAGGCAGAGTGTCAGGTTGTT---CAGGTTGGTGCAGCCCATCTCCCTCCCACCTATGGCGAGCCTGCTCCCCCGCTCACTCCCTTTGCTTTGCTTTG--TTTTCCCTCCCTCCTGAGGAGCTGTGG-CGAGATGAGTAGGAATTTAGTTGAATGGAAGGAt s mm3.chr5 64940900 184 + 149719773 GGCAATGCTCTGTGCCTGTTA----GT-----CAGTTTGCCAGAGACCACCCA--TCTCCATATG---TCCAT-------ATCCAAGTAGCAGATTGTCAGGTTCTCGGCCATCTTAACAGAGCTCA-----------------GTGAGCAAGCTCACCCAA---CCTCCTTCAGAGTACTTTGACATTTCTCCACCTTCCGCGGTGTTACAGCCAAGGTGAGTC----------------------- s rn2.chr14 42911449 198 + 107821284 GGCAATGTTCTGTGCATGTTG----GT-----CAGTTTGACAGAGACCGCCCAGCTCTTCAAATACTTTCTAT-------CTCCAAGTGGCAGACTGTGAGGTTCTTGGCCATCTTAA---AGCTCA-----------------GCGGGCAAGCTCACCCCGT--CCTCCCTCAGGGTGCTTTGATACTTTTCTTCCTTCCATGGTGCTGTAGCCAAGGTGAGTAGGAATTGA------------GAC a score=35974.000000 s hg15.chr4_random 476734 408 + 1219494 GAATGGAAGGAATTTTATTACTCTCTTGCAGTTTGGCAAGATGAGCTCAAGAGGGAAGCCACAACAAAGAAGGAGGCTGCT-GCCATCATTAGGTGTCTGCCACGCCTATGAGTC------AGTGGAGCCTGCACTTCCGTGGGACGCCTGTAGCAAGCTGAGGGGCAGTTCATGTTTTCCATTCACAAAGGAGTCTATGACCATTTTACCGTATCTGCGTAAGAGTCTCCATGACACAACAGTAC--------CCACGTCACCTCAGGTTGGTAAATCAATCTGGG---GCCCAAAGTAAACTTTGGTCTAATTGCCGTGGAAAGGATCTAGACTCGTTCTTTGACCAATGGACCCCTATCTAGGGAAGTAAAAAGCATGATGTTAGATGACCTGAATGTAAAAGCTTAAgtgatcttgggcaaa s mm3.chr5 64941084 400 + 149719773 AAATGGAAGGAACCTTATTCCTCTTTGACAGTTTGACAGGATAAGCCTGAGAGGGAAGCCACATCAAAAAGGGTGCCTGCTGGCCACCATTAGGTGACTTCTGCACAAATGAGTCAGTCCAAGTCAAGGCTTCCTTTCCACAGG----------------GGGGGGGGGGGTAGGTTTTCCATTCACACAGGTACCCACAGCCATTTTGCTGAGCACATGTAAGATG---AACCACGTTGTGGCGTTCGGTATTCAACATGACTTTGTATTGACAAATCGATTCTGG---GCCCAAAGAAAACTT--ACCTAGTTGTCACTCAAAAGATGTAGACCCATTTGGTGACCAGAGTACAGA-ATCCAGGCAAATAAACGTCAT-AGATTAAAACACCTGAAACTTAAAATCGTGGTGATATTTAACATG s rn2.chr14 42911647 362 + 107821284 AAATGGAAGGAAC--TATTTCTCTCTGACAGTTTGAC-----CAGCCAGAGAGGGAAGCCACATCAAGAAGAGCACCTGCT-GCCACCATTAGGTGACTTCTGTGCAAATGAGTCAGTCCAAGTCAAGGCTTCCTTTCCACAGG----------------GG-----------AGTTTTCCATTCACACAGGTACT------------------TACATGTAAGATGCT-CACAACCTGGTACCAC------TGTAAGGTTACGTTGTGTTGACAAATCAACTCTGGCACCACCACAAAAAATAC--ATCTCGTTGTCACTCAAAAGATGTGGACCCATTTGGTAACCAGAGTACAGA-ATCCAGGCAAATGAAAGCCAT-AGATCAAGACTCCGGAAACTTAAAACCTTGGTGCTATTTAACACA a score=5941.000000 s hg15.chr4_random 477309 28 + 1219494 TTAAACATTAGTTTTCTGTCCTGCAAAA s mm3.chr5 64941686 28 + 149719773 TTAAACATCGGTTCTCTGTTCTGTAAAA s rn2.chr14 42912236 28 + 107821284 ttagacatcagttctctttcctgtaaaa a score=1096.000000 s hg15.chr4_random 477337 84 + 1219494 ----------TAATAGT----------TTtctattgaatgggataatacaagtatccatctcataacataatcaggaagtttaaacaaggaaatgcgtgtaaga s mm3.chr5 64941714 101 + 149719773 AAAATAAAATAAAAAGTAAAATCACAATTTTTATCAGGTGGGATGATGAAAGAAGTGCCCTCATAAGGCTGT---GAGGTTTCAGGGAGGTAACCCTTGTAAGA a score=6676.000000 s hg15.chr4_random 477801 48 + 1219494 TGAAGGGAAGGCTCTGAGGTCAAGTTGTTGGAGA--AAGGGTGAAAAGAg s mm3.chr5 64944999 50 + 149719773 TGAGGGGACGGGGCCAAGGCCAGGTTGCTGGAGACTAACAACAATGAGAG s rn2.chr14 64850889 48 - 107821284 TGAGGGGAAGGTGCCAAGGTCAGGTCGCTGGAGACTAACAATA--GAGAG a score=49886.000000 s hg15.chr4_random 478157 640 + 1219494 GGAGCAAAAAGAAAGAGAAGACAGAGTAAGTGGGAAAAGAGAAAAGGTCTGC-ACAGCCCTCACCCTCTGCCTGATTCTCCCTCTTTTTCTTACCTCCCTGAAACTGGGAAGGAAACACTGCCTGGCTGGATTGGGGCTGTTTTAGGAAGGTGAACACAGCAAAATTCTGTGCCCTGCAAAGTCTTAGCCCTCATCTATTTCAGGAGAGAACCTTCTGGTGGGAAGGGGATGGGGACCAAGTGCACAGAAGGATGAGGAGTCCTCAGCGGGCTGGCAGCAAGCCTAGAGGTCAGGGGTAGGCTGTGGAGGGGGCTGCTTTGAGCCCTTCAGGGTGCTGACGGAGGACAAGCCGGC--TGCCCTTGGAAAGA------ATGGAACACCTCGCCTCCTTGCATTGATTCAGGCTGATTTTCTCTGTTGGACTCTTACAATCCTGGCTCTGGGAGTGGGTTGCCATGGTTCTGCTGGTTTTAACAGAG-GGCTAAGTGGCTTCCCTCAGGCTATGCAGCATTTAGCTGCTCGCTTTGGATTTTAGCTTCTCCTCCTTGGAGACCCTGCTCTGCATGGGGGAAAAATCTTGTGTGGACAGTCATGTTCTGGAAGCAATTGGGGAAGTGGGTGCATTTGATTTGAAATAGTTCAT s mm3.chr5 64945049 538 + 149719773 AGAACTGAAGGAAG-----------------AGGAAACTAGAAGCAGCCTGCCAGAGCCCTCACTCTC-------TCTTCAGTCTTCTTT---------------TGGG---------------GGCCTGGTTTAGGCTA-CAGAGGAAGG---ACAC---------TTGATCCCTGAAGAATC--AGCCCTCATCTGCCTTGAGAGGACAGGCCCCTGATGATCAGGGATGGAACTCCTACTCTAACAGGACTGAG----TCCCAGCGGGGTGGCAGAAAGCCTGAGG----------------GAGTGTGGCTGCTTTTAGCACCTTGGGGTGC------AGGAGAAGGCTGTCATAGCCTCTCAGAGAGAAAAAAAAGAGCACCTCTCCTTCCTGGT-TGATTTAGGCTCATTTTCAGAATTGGTCTCTT-TAGTAG-AGCCCTGGGACTGGGTTGCCATGGTTACGCTACTTTTAACAGTGAGGGTAAGTGGCCTCCCTTAGGCCATGGAGCTCTTAGCTACTGATTTCAAATTTTAATTTCTCCTCCATGGAGA--TTGCCCTGTAGAGGGGGAAAAGA-CACATGGATAGGTGAGTCCTGGGAGGAA-----------GGCGAATTTAATTTGAAAGGGTTTAT s rn2.chr14 64850937 500 - 107821284 AAAACTGAAG----------------------------------CTGCCTGCTATAGCCCTCACTCtc-----------ctgtcttcttt--------------ctggg---------------gacctggtttaggctg-ttgaggaaga----------------ttgatcccttaagatgc--agccctcatctgccttgagaggacaggccccagaagaTCCCGGATGAAACGCCTTCTCTACCAGGACTGAG----TCCCAGAGGGCTGGCATAAG--CTGAGG----------------GAGCACAACTGCTTTTAGCACCTCAGGGTGC------AGGAGAACTCTGTCACACCCTCACAGAGA------AAAGAGCACCTCTCTCCCCTGGG--GATTTAGGCTCATTTTCAGAGCTGGTCTCTT-TAGTAGGAGCCCTGGGACTGGGTTACCATGGTTATACTGGTTTTAACAGTGAGGGTAAGTGGCTTCCCTTAGGCCTGGAAGCTTTTAGCTACTGATTTCAAATTTTAATTTCTCCTCCATGGAGA--CTGACCTGCAGAGGGGCAAAAG---ACATGGATGGGTGTGTCCTGGGAGGAA-----------GGTGCATTTAATTTGAAA----TTAG a score=16086.000000 s hg15.chr4_random 479154 182 + 1219494 tagcttagcctgagttctagctt--tgtcatgtaccacttaaatgaccttaagcaaattacttaaccccttagagaaatgggggcc----ctcatagcatgcacttcatatgacaactgtgagaattaaTGGTGTGACGTGTGACCCATGGGGAGCAC-CCAGGGAGGGTGGGTTTACCAGTTCCTttc s mm3.chr5 64945749 164 + 149719773 CAGCTTAGCCTGAATCTTGGCTT--TATCATGTATGACTTGTGTGACCTCAAGTAGATAGT----CTCCTCACAGAAATGGGGACC----CTCACAGT--GAGCTCCAGAAGA-------------TACTGAACTGGAATGGCCCCCCCAGGGAGAACTCCAGGTAGCCTAGGCTAATTAGATTCTTTC s rn2.chr14 64851613 165 - 107821284 cagCTTAGTCTGAATCTTGGCTTTATATCACGTATGATTCGTGTGACCTCAAGTAGAGAGT----CTCCTCACAGAAATGGAGACCTTCACTCACAGC--GAGGTCCAGAGGG-------------TACGGAGCTGGAATGGCACCAC---AGAGAACTTCAGGCAGCCTAGGCTTACTACATTCTC-- a score=29511.000000 s hg15.chr4_random 484199 448 + 1219494 taattcttacacATTCCTGCCTTCTTGGATTAATTATTCTGTTTTGGCCCAGGTGTCCATCAGGGTTCTCCTGTCCCCTGTGACTTAGATTGGATTGGAAC---ATTCTTCCA----TTTCATATTCTGTGCAAAGTCCATGGCCT--CCCTGATTTCTGTGAATTCAGGTGAGCTCCTATCATCATGG--AAATCTTTGGCTTGGAGCTCCTGCTTCTGTGAAATTATTTCAGTTTCTGGCCCATCCTGCATGTGTCTTCCCCGATCTGTGCTCTGTCAGCCCAGCTGTGGAAACCAGTGTCTTTCCTTCATTT-CTACCAAGACTTTCACTTGCA-TAAAGCC---CTTATGTTTGTAACAGATTTTGCCAAAAGTCAAAAGATGGAGGGATTTACCATGCAGATAATGCACATTTTTTAAAACAAATTAGATTTATTTCTGTTTTTCTTTTCTTTCTTTCt s mm3.chr5 64946032 397 + 149719773 TGGTTTCCACAGTTTCCTGCCTGCTTTGGCTGGCTAC--------------GGTGGCTACTTCAGTTGTCCTGCCCCCTCTGACCCAGACCGACATGAACGCGCCCCCCCACCCCCATTCTGTATCCTGTCCAAAGGCCAGAGCCTCACCCAGGTTTCCGTGAG-------------CTGCCATCACGGTAGGATCTTTGTCATGGCTCTCCGGCCTCTGTGGGACTGT-CTGCCTCGTGGCTTCTCCAGCACATGTC-TCCCTGGTGTGTGCAGTG-CAGTCCCTCTATGGAAACTAGTTTCTTCTCCTGATTT-TCACAGCGGTTT---CCTGTATTACGGGCTTATTTACATTTTAGACAGAGCTCACCACAAGTTAGAAGATGGAGG--TTTA-CAGTGCAAAAAAGCAAAAAT-----AACAATCCAGTAGAAA------------------------- s rn2.chr14 64851884 370 - 107821284 --------ACAGGTTCCTGCCTGCTT---------------------------TGACTATTTCAGTTGTCCTGCCCCCTCTGACCCAGACCAGAGTGAATG---GCTCCTACC----TTCTGTATCCTGTCCAAAGGCCAGAGCCTCGCCCAAGTTTTCCTGGG-------------CTGCCATTATGGTGAGGTCTGTGTCAGAGAGCTCCGACCTCTGT-GGACTATGCTGCCCCACCGCTTCTCCAGCACGTGGT-CCTCTGGCGTGTGCCGTG-CTGTCCCTCCATGCAGACTGGTTTCTTCTCCTGGTTTCCCACAATGGTTT---CATGTG-TACAGGCTTGTTTACATTTTAAACAGAGCTCGCCACAAGTTAGAAGATGGGGG--TTTACCAGGGAGAAAAGGCAAAATT-----AAAAATCCAGAAAGAT------------------------- a score=36773.000000 s hg15.chr4_random 484954 482 + 1219494 TTATCTCTGTTTTTCAAAAACTCCATAGTGATTTCTGCCATTGTGTTAGTTGAGATTTAGGCTAAGATGTTGAAACAATAATATCCCCCTCCC-------ATTCCCAGCAACGTACAGTGGTtttatctctctctctcagccca-gagcttaacagtccaagtgaggggaaggtctactgcccacagtcactcaaaccactgttccttctatctggtgtgtcatcatcccctaggagtggttatgtcctcatctgcatggtcaaagctgagtcaaatcacatccacaaac----agcccatcagaaggggagaaaaggagggaatggaggccaaggatttcctttctaaggaagaggatgtagacatcacttccattctcattccattgttgcaacatagtcacatgatcacactggctgcaatgcagtctgggaagtggagtctttcacagagccatggtgtgccccgctggaaagcttttactgtgcaggaa s mm3.chr5 64946429 405 + 149719773 TTACCTTTATTTTCTGAGATGTCTGTAG-AAGTTCTGCCATGGTGTCATCGAAGAGTCCCGCTAAGCTGCTGACCTAAC----CCTCAGCCCCAACGCAGACTCCCAACAG-ATGCCATGTCTCTG--TCTCTCTTTCAGACCA---------------------GTGGCGGTTCTCT--CCCATAGCCAATCAAA-CATGGTCTTTCCTCTCTGCTTTGCCATCT---------GGTGGCCATGGCTTTGT---CATGGTCACAC-----------TACAAACACAAGG----AGCCCATCAGA-------GAGAGGAGGCAGGGGAGGGCCAG--CTTTCCTCCTCTGGAGGCAGATG--------GCTTCCCTTGCTACTCTGCCCATGCA-------------ATCATCCCGACTGAGACGGAACCTGGCAAGTGGAGTCTCTAACAAGACAGCAATGTGTTCAAGTTGGATGCTGTTAGTATGTAAGAA s rn2.chr14 64852254 417 - 107821284 TTATCTTTATTTTCTGAGATACCCACAG-AGGTTCTGCCATTGTGTCGTTGCAGAG--------------TGAAATAACAGTACCCCAGGCCCAGCACGCACTCCCAACAG-ACACCATGACTCTG--TGTCTGGTTCAACCCAGGAGTGAGCTGGCCCGACTATGTGGCAGGTGTAT--CCCATAGCCAGTCAAA-CATGGTCTCTCCACTCTGCTTTGTTATCC---------GGTGGCCATGA---TGT---CATGGTCAAAG-----------CACAAACACAAGGAGCCAGCCCATCAGA-------GAAAGGAGGCAGAGGAGATCCAG--CTTTCCTCCTCTGGAGGCAGATG--------GCTTCCATTGCTACTCTGTTCCTGCA-------------CTcacactggctgaaatggaacctggcgagtggagtctttaacaggacagccatgtgtccaggttggatgctgttcctaggtaagaa a score=86153.000000 s hg15.chr4_random 485487 875 + 1219494 TGGATTCCGGGGTTTGCTTAATCTTG----TACTTTCTCTTCATTTTCTCTTTCCACTCTAATTTTATCTCAGCTCTCTCCCTCTGCTTCTTGCCCCCGATTCATACTTATTTCCAAAACAGAATGG---------TTCTCTCAAATCTC----------------AGGG--TCTCACTTTCCATCCCAAATGACCTAGAAAGCTATTGTCCTAAACAAAGATAT------------------TTCACACTCAAATTGGGAGTCTGGCACCAGCTGTTAAGATATTTTTCGT-----------------------------ATCTGGCTACATGGTG-AAAATAAAGCAAGACACTAT-TTTAAGACACTTTTCC-CAAAAACAATGAGTTAAAATTCACAGAAATCAATTGGTCTGTCATGTAAACATCCCAAATCTTAAGTGATTTAACAAGCTCTTAAGAAGCACAGGCTGTTTATTGCTTAAAATGAAATAATTTCACACTACAGCAGAGTGTACAATCTAGACTTCCTAGAAAAAGTTTCAGAGGGGGCAGCTGATACTTTTTTTGCCAGAAAAGTAGAAAAATCTTCAT----GAGTTCTACA----------CTCT------------------------------------------TTTCCCCCACCTTG-----------CTAGAGGACACCTGCCCTTTGTTCAGTCAAGCcacacaaccatttaaa-----gtttatgctaggatcggtgtaagtcacgtctgattacattttattgggcaaagcaagttgtgtggacaagctctac-gtcaatggagtaggaatgtctaattctccca-cgtgggg----------cct-gcaagtaacagggcAAAGGATGTGAATGCACAATCTTCTTAGGGGGACACAGTGAACACTGGGGCACAGTAATCAATCTACCAATTGTAAAAGGAGGGACCAGGAATAGAGATTGAATCCAGTGCACAGAGATCTTTGAATGATAAGCATTATAACTGGAA-TGTATTT s mm3.chr5 64947459 965 + 149719773 TGGAGGCCAGCTTTTGCTTGATCTTTAATCTGGTTTCACTTTA-------TCTCCACTCTAT---------ACCTCGCCACCCCACCCCCACCCTACCG--CCATCATTATTTCTA-AGCAAAATAGTTCAGCCG-TTTTCACAATCCCC-ATTCGCCCATGCACTGGGGGGTCTCACTTTCTATCTCCAAGGGCCTATAAAGCTATTGCCCT-aacaaacaaacaaacaaacaaacaaaACCTTCATCCTCGAATTGGAAGTCTGGTGTCAGCTGTTGAGATTTCTTTCTT-------------------------TTTTGTCTGGCTATGTGATTTAAAATAAGGCACAGCATCAT-CTTAAGATACGTTCCCAGCAAAACACTGAGTGGAGAATCAAAGAAATCCATTGATCTGTAATGTAAACACCCCAGCTCGCAAGCAGTCCAGCAAATGTGCAAGCCGCACAGGATGCTCACTGCTGAAAATG----------ACACTACAGCAGAGCGTAAAATCTGCATTTCCAAGAAAAATGTTTTCAAAGGGTAGCTGTTACTCTCAGGACTTGAATAGCAGAAAGATCTCCGTGGTAGCATTCTCCGTGGGAGCATTCTCAGTGGGAGTATTCTCAGTGGGAGTGTTCTCGGTGGGAGAGTTCTTGGTGGCACCTTGGTGGCAGGTGTCCAGGGGGCACCTGCTCTCAGCTCAG---AACTGCAGGAGCATTTAGATATTTATCTCTGCCAAGATAGATGGATGCC-TGCCTGATTACATGTTATTGGACCAAACAAGTTATGTGGACCGGCCCCAAAATCAGCAGAGCAGAAATCAATAATACTCCCTTCTTGGGGTGGGGAGATGCCATGCAAGTCACAGG---CAGGATGTGCGGGTGTGATCTTATCATGGGGAGAGAGTAAAGGTTTCGGGACAGTGGTCTATTTATT------------AGAGGCTGGTGACAGAGGTTGAATGGAGGCCACACAGATCTCTGAATGCCAGGCTATGCAATTGGGACTTTATTT s rn2.chr14 64853051 849 - 107821284 CAGAGGCCAGCTTTTGCTTGATCTTT---CTAGTTTCCCTTTA-------TCCCCACTCTAT-------------CGCCCCCCC------------------CATCATTATTTCTA--GCAGAATAGTTCAGCTACTTTTCACAGTCCCCCATTCACCCATACACTGGAG--TATCACTTTCCAACTCCGAGGACGTATAAAACTATTGTCCT-AACAAAGAAAC------------------TTCGTCCTTGAATGGGAAGTCTAGTGTCAGCAGTTGAGACttttttcttgttttttttttttttttttttttttttttGTCTTGCTCTGTGATA-AAAACAAGGCACACAGTCATGTTTAAGATACTTTCCCACCAAAACACTGAGTGGGGATTCAAAGAAATCCATTGATCTGTAACGTAAACACCCCAACTCACAAGCAATCCAGCAAATGTTCAAGCGGCCCAGGCTGCTCTCTGCTGAAAATGAACGGATTTCACACTACAGCAGAGTGTAAAATCTGGATTTCCAAGAAAAGTCTTCTAACAGGGCAGCTGTTACTCTCAGGACTGGAATAGCAGAAAGATCTCCGTGGGAGAGTTCTCCGTG--------CTCA-------------------------------------------------------------------CCAGAGGCCACCTGCTTTCAGCTCAg---aactgcacaagcatttaga-----gtttctgccaagacacatgggtgcc-tgcctgtttacatgttattgt-ccaaacaagttatgtggaccaGCCCGATAATCAGC--AGCAGGAATC---AATACCCTCCTCTTGGAG-GTGGGGATGCCA-GCAAGTCATGGG---CAGGATGTACGTGTACCATCTTATCATCGGGAGAAAGCAAAGGTTTC--------------------------------AGAGGCCAATAACAGAGGCTGAATGGAGGGCACACAGATCTCTGAATGCCGGGTTGTGCAACTGGGACTTTATT- a score=3012.000000 s hg15.chr4_random 537577 65 + 1219494 ACACCCCTCAATAAA-ACCAAATAACAGCTCATCAACTCCTTACATTAAAAAAAAAA---------CTGACATCT s mm3.chr16 7474067 75 - 98986639 ATATCTCACAATAAAAACCATATGACATCCCATCCAGTCCTCATATCAAAAGGACGGAGCACAGTTCTGGCTTGT s rn2.chr11 58126618 64 + 88445885 TTAGCTCACAACAAG--CCAAATAAGA---------GCCATCATATTAAAGGGATGGAGCACTGTTAGGGTTTAT a score=52531.000000 s hg15.chr4_random 537642 595 + 1219494 TATAAATA------GCAAATATTGGATGACAATAAGGCACAGGAAAAAGCTCATAAGCCCAGATCAGCAGTCATCattcaattgttccttagctactgactgtgcacctgttctgtacc-agcaccgcatcctagatgcagggacaccacacg---aaataagatgacaaagcacctgcccctgtggagctgagccactagcagaggagacagtcactaaacgaatatctctatcctgtgatttctgggaatgacaatcacaaaaaaggatagaaagggatggaggaaagCTAATTTAGACAACTCAGGAACAGAATGGGGAGGTGGTTGCATCCCT-----CAAAATTCAGagtagc--tggagtgcaagccttg-tattagctgagcctgaatcctggccctgccgttgtccacggtgtcctcaggcaaatggctcaactcctctgaccaccggct---tcaagtgcagaacaggggaccagagtcccatctctcagggttgttgctgtggactgaatTGTGTTC-------CCCCCAATTC---------ACTCA------------------------------ttaggagctaattaacattcaaggaggtcataagggtggaatcctaatctgataggattggtggttttataaaa s mm3.chr16 7474499 623 - 98986639 CATAAATAAAATGCATAAATCATGGATGATAACGGAGTAT--GACAG---TCATAATGCCAACTCAG-ATTTATTGTTTAGCCATTTGTTGCCTACTTTCTGTA-ACCTTGTCTGTTCC-AGAGCTC--TCCTAGACACAGAGATATGACAGAGATAAACAAGATGAC-AGTCATCTGTCCTTAAGGAGCCGAGACTCTCGGTGCTTAGACAGGC---AAACACATCGTCCAGACGTGT--------AGCAGGATGAACACATGGA-----------GGCTGGAGGAAGGGGTATTTACATAATGCAGGGTCAAGAGGTTCCAGCCATTCAAATCCTGAAGACAAGGTTCTTTGTAGAAGTTGATGGACAGCTTTGCCCTTCGCCCAGCGTGACGCGGGACCCAGCCGCTGTCCGTGGTGCCCT-TGGCAAACGTC-CAGCTCCTCTGACCTTCAGCTCCCTTAAGCACAGAATCTGGGATCAAAACCCCATCCCTCAGAGTTGTtgctctgtactg-accgtgtctgcccaccccccaaactcatgctggtgccctaaactctaatatgactttgttggtagaactttctggggctaattacgtttaactgtgttcaccagaggg---tcctcatctgataggactggaggtattagaaaa s rn2.chr11 58126956 581 + 88445885 CGTAAAGAAGATGCACAAATCACAGATGAGAACAGAGTATAAGACAG---CCATA-CGTCAACTCAG-ACTTATTATTTAGCCATTTGTTACCTGCTCTCTGTA-ACCCGGTCTGCCCCCAGAGCTG--TCCCAGACACAGAGATATGACAGAGGTAAACACGATGAC-AGTCATCAGCCCTAAAGGAGC----------------TAGACAGGC---AAACACGTCCTCCAGACACAT--------AGCAGGATGAGCACCTCGA-----------GGCTGCAGGAAGGGGTATTTACATAATGCAGGGGCAAAAGGCTCCTGTCAGTCAAATCCTGAAGACAAGGTTCTTTGTAGAAGTTGATTGATAGCCTTGCTCTCTACCCAACATGAAGCTGGACCCAGCCACTGTCCGTGGTGCCCT-AGGCAAATGTC-CAGCTCCT-TGaccctcagct-ccttaggcacagaatccgggatcaaagccccatcccttagagtcattgctctgtaatg-accatgtcc--------------------------ccccaaactctaatgagactgtgttggtggaactttttggaactaattaaggttaacagtgttcacaagaggg---ttctcatctgataggactggtggtatttaaaaa a score=2891.000000 s hg15.chr4_random 538819 26 + 1219494 CATCTCATGTATTGAGATCATTCCCt s mm3.chr16 7476342 22 - 98986639 CAGCTCCTGTATTAAGA----TGTCT s rn2.chr11 58021810 22 + 88445885 TAGCTCCTGTATTAAGA----TGTTT a score=11708.000000 s hg15.chr4_random 539213 118 + 1219494 AAGCCTCTATTTTCCTCTGAGACAGGCTTAACCCGAATAGGCCTATCTTCACAGGCCTTGAATAGTAATACTGTTATGTGTTATATTAACATGTATTTTACTGAAAGTCTCTGGTTTT s mm3.chr16 7476478 115 - 98986639 aAGTCTTAATTTCCCTACGAGGAAGCTCTACCCCACACAAGCCCAGCCCCAGCTGGCTTGAATAGCAGCAT--CCATGCACC-TGTCAGAGCGCACGTTACCCAAGGCCTCAGAGTTT s rn2.chr11 58021836 103 + 88445885 AAGCCTTAATTTCCCTTTGAGGAAGCTCTACCTCACACAAGCCCAGCCCCAGCAGGCTTGAATAGCAACAC--CCATGTACC-CATTAGAGTGCATGTTACTCAAG------------ a score=70505.000000 s hg15.chr4_random 539338 902 + 1219494 CTGAACATAGGCAGGCATTGCTGAAACTTGCAGATGACATTCCAAGATGCATTCTATCTTAAGCAG---AGAGGGTGGTGAGGAAAAATTGTAGATACCTTCCCCTCAATGGAGAGGTCCCCATGGTGTGGCCGACCTTGGTATAAGCCTTTTTGCTCCGTTAATTCATGAGGGCTGAGTCTGATTCATACTCACGGGGAAGACTAACAAGGGAAGCCTTGGCAACCATTAGGAATAACACTCATGACCCAGAAAGTGGTTCTGTCTTTATGGGGCATCATCTGTCTTGTTTACTAAGTGACCTTCTGGCTCATTTTTCTTCCAGCCAGGGTTGGAATTCAATAATTCTAGTTCCTTCCCAAATTTTAGAGCAGAGAAATACATTCCTCCGGTTTCTACTTTTCAAAAGTGAATGACATCTGTGGAGCTCAACTCCTAAATAGTGTGACTTTGTCTGTTTATGTGGTTCTCTTGCTGACTGCCTGGTTGTGACAG------TGCCTGAA-CTCAGGCCTCTGTGTTTCTGAATCTTA-GAAGCGGTGGTTGGCATGTCAAACTTGAAGTCATTGTCCTTTAGTTATCTGAGTG-TTATAATTGAACAGCACATTTATTAACAAGACTTTAGTAAATCCATCAGCTTTCTAGGAAGCTTTGATTCATTGACCTATCTCTAATGTAAGCAAAGGCTGCCAGAGAGTCACTAACAAGGATTCCATCTTTCCTCAGAACCTTCGATTCGCTTGGGTCGAAGTTCATACCTGTTTCATGAAAAATGCAAAACCAATTAATCACAGCTGTTCATAGTATGCCTATTCTAAGAGACCT-CTGCTGTTCCTACCCCAGGGACAGCCAGAATAATTAAAAGTCACAGAAATCAAACAAATGGGCCTCTGGATAAATTATAGAAG s mm3.chr16 7476966 783 - 98986639 CTGGGAGCAGGAAGCCAGTGTTGAGAC-TACAGTCAACATTCCAAGATATAATCCATCCTAAGAAACTCAGAAGGTGACAAGGACA----CTGTACAACAT-TCCTCCACAGAGAGGACTGTA---CTCAGCCAGGCCTGGTGCCAGCTTTC------------------AGCCCTGGG-------CATAGTCAC--------------CAGGAAATCTTGGCAGCCA----TAGTAACTCTCAGGCCTCCTGAGGTCACTGCGTCATCCCATGGCAGGACCTGTTTCACTT-CTGTGTGA---TCTGCCTTGTTTTGCTTCCAGTTGTTGGGCAGATTCAGT-----------CATCCAAAGTTTTAGACATGATGAAAGCA---------CTTCTACTTTACGAGGGGGAGCTAC--CCTTGGAGACGAAACCCTCAGTCACTCAACTTCATTCTTGT---AGGTCCCCTAGTT----------TTGTGGCTGCCACTGTATTAGAACCCCAGGCCTGTAC-CTTCGGGATATCTCGATGCTGCAGTTGCCAGG--ACAGCTAAAGCCATGTTCCTTTAGTCACCGGAGTGCTTGTGAGTG------------------AGGTGGTGGGTAAACTCCTTTGCATCCCCAGCAGTTCCCACTCATTCACCTACCTCGAATGT--TTCTTTTCGGCCAGAGAGTTGCTTACGATAACGCCATCTTTCCGCACAACCCTCGACCCGCTTGGGTTGAATGTTATACCTGC-------AATGTGCAAAGGCAGTGGGTCAGAGCT-------GTGTGCCTGTCCTGAGTGTCCCGCCGATGT--CCACCC--AGGCCTGCCATAGGAATAGAAAGTCCCAGATGTCAAACCATCGGGCTTTTGACTAAGCAATAGGAG s rn2.chr11 58022291 741 + 88445885 CTTG-AGCAGGGAGTCAGTGTTGAGAC-TACAGGCAACATTCCAAGATGCAATCTGTCCTAGGAAAGGCAGAGGGTAGCAAGGACA----GTGTACACC----CCTCCACAGAGAGGACCATA---CTCAGCCAGACCTGGTGTTAGCCTTC---------------------TCTGGG-------GACACTAAC--------------AAGGAAATCTTGGCGACCA----GAGGAATTCTCAAGCCTCCTGAGGTCACTGTGTCATCCC-----------TGTTTTGGTT-CTGTGTGA---GCTGCCTTGTTTTCGTTCCAGATGTTGGGAGGATTCAAT-----------CATCCAAAGTTTTAGACA-----AAAGCA---------TTTCTACTTTTCCAGGGGGAACTAC--CTTTGGAGATGAAACCCTCAGTAACTCAACTTTATCCTTGT---TGGTCCCTTGGTT----------TTGTGGCTG------TATTTGAGTCCCAGTCCTGTAC-TATCTGGATATCACAACACCGCAGTTGCCAGGT-ACAACTAAAGCCATGGTCCTTTGGTCACCAGAGTACTTGTCAGCA------------------AGGCGGTAGGTAACCCCCTTCGTGTCCCCAGAAGTTCCCACTCATTCACCTACCTCGAATGTAAGCAAACGCAGCCAGAGAGTTGCTGACAATAACGCCATCTTTCCGCACAACCCTCGATCCGCTTGGGTTGAATTTTATACCTGC-------AATGTGCAAAGGCCATTGGTCAGAACT-------GTGTGCCTATCCTGAAAGTCCT--------------------GCCTGCCACAGGAATGGATAGTCCTAGCTGTCAAACCACCAGGCTTCCGACTAAGCTATAGGAG a score=13937.000000 s hg15.chr4_random 545914 138 + 1219494 tccctctgtgtctcttcttttcttcttataaggataccagtcatatggtgtgaagggcc-caccttactccactatgtcgccaagttaatttgttacatctgcaaccacccaatttccaaat---gtcacattctgaggttc s mm3.chr16 91478092 139 + 98986639 tctctccctttcttgtcttgtctcctgatggggacactcaccatacagcattaaaagtttcccctgagctccagatgccctccttttaactacttataactgtg---ttcctgttttcaaatcaagtcacattctgagctac s rn2.chr11 30281464 137 - 88445885 tttctttctttctt-tcttgtctcctgctggggacacttatcatatgccatgaacggat-cccctgagctcggtatgccctccttttaactacttatgtctgca---tccctgtgttcaaataaagccacattctgagctac a score=48087.000000 s hg15.chr4_random 547030 368 + 1219494 aacgtgaatttgaggggacaccattcaacccacagcaGAGCCCCAC---------CATCACCTC-----TCTG---CACAGGGCACCTGCCTGTCTTTCCTT----------------GCCAGCACC---------------------AAGACAGAGCCAAGAGTGATTTCTTGAAATGAAACTGCATCCTCTCATCCCAATAAGGCATGGCCTCCCTAGTGGGAGATGAGCAAATGAAAGCCTCCCTCAGGATGGTCATCCACACGTCCATGGGACACTCACCCCAATTTTTTTTCCTGGTTTATAAAGGTGCTTCAGGA-CCTCTTGGCTCCTGGCCAATACGTTA--GTGCTTCCTGAAGGGGAAAGAGCCCTCCAAACCATTCATTGGGCCATCCCAGACCAAGGTTTCTGACCCAAACAT s mm3.chr16 91478231 404 + 98986639 agtaggaacacggagatacattattcagtccacaacaAAGCTCTACTGTATTTCCCACCACCTC--CCGCCTGCCCCGCTGAACTTCTTCCCGGCAGGCCTTACCCTGTGCAGGCTG-CCCCCCACCCCCAGCTTTCCTCTCTGGGGTGAGGCAGGCCCAGGAGTGGTTTCCTGAAGTTTAATGCCATCCCCTTACTCCAGGAAGGCCT-------------GGAGATTAGAGAACTCAAGTCGTCCTCGGGACGGGTGTCCACACGCCCA-GGGACACCCA-CTCAGCATATTTTACTAGTTCTT--AGGCTCTTCCAGATTCCCTGGGCTCATGTCCAACCCCTTAGTGTGCTGCCTGAAGGGAATGGAGCCGTCC-AGCCTTGCACCAGGCCATCACAGACCAAGATACCTGGCCCAGACAG s rn2.chr11 30281601 408 - 88445885 gctaggaatacggagacatattattcagtccacgacaAAGCTTCACTATGTTTCTCATCACCTCATTCCCCTGCCCCTCTGAACTCCTTCCTGGCAGGCCTTACCCTATGCAGGCAATCCCCCCACCCCCAGCTTTCCTCTGTGGGGTAGGGCAGGCCCAGGAGTGGTTTCCTGAAGTTTAATGGCATCCCCTTACTCCAGGAAGGCCT-------------GGAGATTAGAGAACTCAAGTGTTCCTCAGGACGGGTAGCCACACGCCCA-GGGACACCCA-CTCAGCATACTTTCCTGCTTTAT--AGGTTCTTCCAGATTCCCTGGGCTCATGTCCAATCCCTCAGTGTGCTGCCTGAAGGGAATAGAGCCCTCTGAGCCTTACACTGGGCCATCACAGCCCGAGGTGCCTGGCCTACACAG a score=105301.000000 s hg15.chr4_random 548200 837 + 1219494 GAAAGCTGACAT-TGG--CTCCTGTGCCCCACCTCTG-GGCCTGGTTTGGTGACCTCTGCACCAGAGCTTCTAGGGAGGCCCTAC---CCCACATGTTGTTAACTCAACAACCCTTCCCCA-GGGGAACCAACGTCCTCCTGTCCCCAAACCCA------AGGAGGGGTGGTGGGTTCCTGGGCCTCTTGTAACCCGACTGAATATTTTCCAGGTTACCTAACCAAACTCCTGTAAAACCACACCACCTATGCCTGTGATGGGGACTATCTGAATCTACAGTGCCCTCGGCATTCTACAATAAGTGTCCAATCGGCATTTTATGGACAAGATTACCCAATGTGTAGTTCCCAGAAGCCTGCCTGCCAGAGGGAAGACAGCTTAACTTGTGTGGCACCCACCACCTTCCAGGTATTGCCTTTTATAGACACGTTAAGATGATACAGT------TTCAACA------------GACACTCTTTCTCTCTCTCT------------GGGTGTAAA----TATATTTGTGA-TTATATAGTTTAATCCAAGCAAAACTGATCCATGAAAAATCCCAACTTATACAGATCACCAG-ATTTGTAGGTGAGCTATTATTTGCTTCTCAAAGGATTTGTTACCCAACAAAACTAAATAGAATTCCTACCTATTGTAGAGCCCCCTTTGTACAC-TTCAATATGAATTTATTTGTAGGTTTACTCCTTACTTCAGTATAGCAAAGTACAACCAGGATAGATTCCAACCTCCAGGCCCATATCTCCCATAAATACTCCTGTAGAAAGAGAAGGTGGGTTCTTTAATGGAAA-CCACAAGTATCTCTTTGAGGCAGACATCTGAACTCATGACCAACTTCTTAGAAAATGTACTCAAAGg s mm3.chr16 91478635 853 + 98986639 GAAAGCCAGCATCTGA--CCCCACAGCCCC----CTGTGGCCTCCTTTGGTCAC--CGGCCCCAGGTCTTCTGCAGAAGCTATATATGCCCACACCTTTTTAACTCAGCAGCCCCTGCCTCAGGGCCACTAGCATCTCCTTGCTCTGAAATCTGTGCAGGAATGGGGAAGGGGGCTTCCTGGGGCTCCTGTAACCCAGCTGAATATTTTCCAGGTTACTTAACCAAACTCCTGCAAAACCACACTGCCTATGCCTGTGACGGGGACTATCTGAATCTACAGTGCCCTCGGCATTCAACAATAAGTGTCCAGTCGGCATTTTATGGGCAAGATTACCAAATGTGTAGTTCCCAGGAGCCCATCTCCCAGAGGGAAGACAACCTGACCTGTGTGGCATCCACCACTTTGCAGGTATTGCGTTTTGTGGGTGTTCTAAGATCATGAAATAGGTTTTCCCCCCTCTCTTTTCTCTACCTCTGTCCATCTCTTTCT-CCCCTTCTTCCCTGCATTTATGTGTGTGTGTGTGATTTTTACAGTTTATTCAAAGCAAATA---TCCATG-AAAACACCAATTATTATACATCATTCATTTTTGCAGGTGAGCTACTACTTGCTTCTCAAAATGAGTCTTTGTCATAGAGTACAAATGGAATCCCTGTGAGATAAAGTGTTCCCTCTGCACACATTCAATATGAAGTTGGTCACAGGTGCTCTCTTTACTGCAGTGAAGCAAAAC--AGCTATGCTGGACTTCAACCTACAGGCCCATATCACTGATAAATGCCCCCATGGGGAAGG----------------TGGAAA-CCCCACATGTCTTTCTGATACCAGGATTGGCA---GTCACGAGCTTCCTAAAGAAAGG-CCCAAGAG s rn2.chr11 30282009 813 - 88445885 GAAAGCCAGCATCTGGACCTCCGCAGCCCC----CTGTGGCCTC-------------------AGATCTTCCATAGCCGATAAATACACCCATGCTTTCTTAACCCAGCAGCCCCTGCCTC-GGGACACTAGTGTCTCCTTGCTCCGAAATCTCCATAGTAACGGGGAAGGGGGCTTCCTGGAGCTCCTGTAACCCAGCTAAATATTTTCCAGGTTACTTAACCAAACTCCTGCAAAACCACACCGCCTATGCCTGTGACGGGGACTATTTGAATCTGCAGTGTCCTCGGCATTCAACAATAAGTGTGCAGTCGGCATTTTATGGGCAAGATTTCCAAAGGTGTAGCCCCCAGGAGCCCATCTCCCAGAGGGAAGACAACTTGACCTGTGTGGCATCCACCGCTTTGCAGGTACTGAGTTTCGTGGATGTTCTAAGCTCATGAAATTGG---TCCCCCC------------ATCTCTGTCCCTCTCTTTCTCCCCCTTCTTCCCTACATTCA----TATATATGTGATTTTTACAGTTCATTCAGAGCAAAAC---CCCATG-GGAACTCCAATTATTATACATCACTAGTTTTTACAGGTGAGCTGCTCCTTGCTTCTCAAACTTTGACGCTGTCATGGAGAACACATGGAATCCCTATGCCGTAAAGCATTCCCTCAGCACATGTTCAGTGAGAAATTCA----GGGCACGCTCTTTACTGTAGTGAAGCAAAACAAAGCCATGTTGGACTTTGACCTCCAGG-CCACAACACTGATCAATGCCCCAGTGGGAAAGG----------------TGGAGACCCCCAAGTGTCTTTCTGATACCAGAATTGG-------ATCGAACTTCCTAAAGACTGT-CCCAAGAG a score=16557.000000 s hg15.chr4_random 550834 96 + 1219494 ATTCCTTCTGGGGGAAGCTGATGGTGCCTTCAATTTTTGTTTCTGCTTCAGATGAATTAAAAAACAAAACCGTGTGTGAAGACAAGGAGCTGAAAC s mm3.chr16 91486512 95 + 98986639 ATCCCTCCTCAACGAGGCTAAT-CTGTCACCGGTTTCTGCTTCCTCTCCAGATGAGTTGAAAAACAAGACAGTGTGTGAAAACCAGGAGTTGAAGC s rn2.chr11 30400918 95 - 88445885 ATTCCCTCTCAGCGAGGCTAAT-CTGTCGCTGCTTTCCGCTTCTCCTCCAGATGAGTTGAAAAACAAAACAGTGTGTGAAGACCAGGAACTGAAGC a score=39834.000000 s hg15.chr4_random 552550 311 + 1219494 CTCCAGCAACTTCACCGGGCCTCCCTGGGAAGTCTCCCTTGCTGCTGATGGGCACGAAGGCACC----AGGGCCTCCTGTACATGGAAAACTCACAATCTA-GGAATGTCCTGTGGTTGTTGATCCTGGGACATCCCCAGAAGAATTTAGTTAAGCCCTCCAAGAAAGGAAACAAGGTTTTCTTGCTGCTGAAGATGTCTCACTTGTTCTTTTTTAAAAAAGCAGTGCAATTGAATTTGC--AGTTTGTTTTTGCTTTCTTTCCATTTCCTGTTGCTACATCTCCAAGATCTCAGCTGCGCTGAGGAACAAACAAAAA s mm3.chr16 91504735 301 + 98986639 CTCCAGCACCTCCGCTGCACCTCTCCCGAAAGCCACCCCCA-TCTTGGTGG-CACAAAGGCGCCCGCCAGGGTCTCCTGGATTTGGGGGGTTCACAATTTATGGCTTGTTCTCTGCTTGTTGGCCCTGGGATATTTCCAGAAGAGTGTAGTTAAGCAATTGGAG-ATGGAAGTGGGGTTTGCTTGTAGCTG-GGGTGACTTACAGGGTCTCT------------GTGCCGCGGATGTCGCCGCGTTTGTGTTGGCTTCACTTGCTCTTCCTGATGCCGCTTCTCCCCGATACCATTTGGG-TGAGGCAAAAAGAAAAA s rn2.chr11 30418460 298 - 88445885 CTCCAGCATTTCCGCTGCACCTCTCCAGAAAGCTGCCCTCA-TCTTGATGGGCACAAAAGTGCC----AGGGTCTCCTGGATTTGGGGGGTTCACAATTTATGGCTTGTTCTCTGTTTGTTGGTCCTGG-ATGTTTCCAGAAGAATTTAGTTAAGCACTCAGAG-AAGGAAGCAGGGTTTTCTTGTAGCTG-GGGTGACTTACAGGGTCTCT------------GCACTGCGGATCTCACCTCGTTTGTGTTGGCTTCACTTCCTCTTCCTATTGCCACTTCTCTCAGATACCATCTGGGTTGAGGCAAAAATATAAA a score=80011.000000 s hg15.chr4_random 558956 771 + 1219494 GAATACCCTGCAGTGAGAATTCCCCTGTGGTTCTCAGGCTTCTGTAATTCCAGCAAATACACCCTTCCTTCATGTTCACTAAAATGCAGATATTGTGAGATAATGCTCATTTCTCACAGCTTGCTTGAA---TAATAATAATGATCATTATAGTAATTTACAACTTAATAGTCAACACTGCCTTTTTAACCCAGTCTGTGAGACTGAATC--GAAAAAGTGACATTCTTTGAAG-----CTCTCAATTAATACACCAGACTGCATAAAC----TCTAATAACTTACCTTTCCA-TGGAAAGAGAATATGTGGGTATTCTCTTTGAAGACAAATGGTAGAGAGTAGACTCTCATCAAAGACCCTCTGGCAGTAATGAGTTGCATTCGGGAAGGTTCCAGAAGGTTCTGTGGAAGGCTGCAGTTTGAGATTGGTTCTCAGGTGTCTGTCTAACTACTTTCTAAGGATGAAGACTCCTGG-TTCGTGTTTTAGCT------------ACACCCACAGGA----------------------------------------------------------------------------------------------------GCAACAGAGTA--------AGACATTCCTC------------------CACACCATAACAGACCCCGGCAGTGCAGAGC----CATGTGGGTCTTCT------CTGTCCTGCTGTCCACAGTCTGGTTTTATCTTAGACCCAGCCTGGTGCAATTCATGTTGTGTATTGG-----------CACTCCAC-TTAAGTTTCCTGTTT----------GTAAAAAGCCCCTTTCATTCGGTGATTCCTAGGGCTTTAGGGGAACTTTCTGG-AAACCAGGAAGAAAGAAATAAAGGTTGTTTTGCTGAGGATGGG-TTACATGGGGCGCGGGACCCAAATGAGTGG s mm3.chr16 7526989 852 - 98986639 GACTGTCCTGC----GGATTGCCCCTGTGTGCCTCTGCCCTCCATAATGATAGCAAGTTCGCCCTTGCTGACAGTTCGCTGAAGTTCACACAGGGTCAGGTAGGGCTCCTTTCTCACCGCCTGCTTGAATAGTAATAATGATGATAATTATGCTAATGCACAACTTGCCTTCGAACACTGTAATTTCATCCCAGTCTGTGAGGCTGAATCACAAACACTTAACATTCTTTAAAGTAAAACTCTCAATTAGTATATCAGTCTGCCTAAGCCCTGCCTAATAATTTACCTTCTCACTGAAAAGAAGGTGCGTGGG------CCGTGAAGGTAAGTGGTACAGACTAGGCTTTCAT--------------CAGTAATAAGTCACATTCCAGAAAGTTCCACAGAGTTCCAGGGAAGGCTGTAGGATCAC-TAGCTCATCA---------CTGGATGTCTTCTAAAGATACAGGCTT-----CTTCATGTTTATCT------------GCTCACATAGGaaaaaaaaaaa-------taaataaataaataaaaataaaaaataaaaaaaaataaaaaaataaaaaaaaaaaa---------------------------aaaaaGGAGTAGTGGCCTGAGGCACTTCTTGTGGTCAGGCCTGTCT----GGCAGTAAATGACCTCAGCCAGG-AGGGCTGTGTGTGTGTGTCTCCTTCCACACACTCATCTTGTCCAAGGTCTTATTCTATCTGAGAATCAGTATGGAGCAATTCTTGATGTATCGTGGGCTCTTCATATTACACCACGTTACATTTCCTATTGTAGAAACAAAACAAAAACCTCCTT---------------TGAAGCTATA-AGGAACATTCTGGAAAATCAGGAAGAAGGATGTCCAAGTTGTTTTGCTAGGAACAGG-TGTCGCTAGATGGAAGGCTCAAGTGAGCAG s rn2.chr11 58182708 882 + 88445885 GGCTGTTCTGT----GGAATGCCCCTGTGGTCCTCGGCCCTCGGTAACTATAGCAAGTTCACCCTTGCCGACAGTCTGCTGAAGTTCACGCGGGGTCGCCTAGTGCTCCTTTCTCCCCGCCTGCTTGAACGGTAATAATGATGATAATTATATTAATGTACAACCCGCCCTCGAACCCTGCTATTTCATGCCAGTCTGTGAGGCTGAATC----ACACTTACCATTCCTTAAAG-----CTCTCAATTAGTACATCAGTCTGCCTAAACCCTACCTAATAATTTACCTTCTCGCTGCGAAGAAGGTGCGTGGG------CCAAGAAGGTAAATGGTGCAGACTAGGCTTTCAT--------------CAGTAATAGGTCACATTCCAGAAAGTTCCACAGGGCTCCAGAGAAGGCCGTTGGATCAG-TAGATCAGCA---------CTGAACATCTTCTAAAGATACAGGTTTCggggctggggatttagctcagtggtagagcgcttgcctaggaagcccaaggccctgggttcggtccccagctccga---------aaaaaagaaccaaaaaaaaaAAAAAAAAGATACAGGTTTCATCATGTTTCTCTCCTCACACAGGAGTAGTGGCCTGAGGCATTTCTTGTGGTCAGGTCTGTCTGTCAGGCAGCAAATGACCTCAGCCAGG-AGGGC----TACGTGTGTCTGCTTCCAAACACTCATCTTGTCCAAGGTCTTATTCTATCTGAGAATCAGTCTGGAGAAATTCTTGCTGTATCCTGGGTTCTCCACATTACACCACATCACATTTCCTAGTGTAGAAGCAAAATAAAAACCTTCC------------------GAGCTATA-AGGAACTTTCTGG-AAACCAGGAAGAAGGATGTCCAAGTTGCTGTGCTAGGAACAGGTTGTCACTAGACAGAAGGCTCAAGTTAGCAG a score=55887.000000 s hg15.chr4_random 559783 531 + 1219494 TTTGGAGAAGCCGGGAGAGGAGGGGGCAGAGTTTCTTTCCCAGCCAGCCAGGGTGTC--CAGGCACTTTTGGTCCTAGGACATCTCTCTGTGCATTCCCAAGTAATTGCAAGGCTTCTTCTTGTCATCGCCTGAGACTTGGA--TTCCCCAAGCGTCCTTCTTTTCCTGGAGCCT-CTGAGTCCTCCATTCCTGAGG----------CCTTTCTTCAGCCCTCCCAATAGCCCTGCCATGATTTCATTGCAGGGCTGTGACCGTCTATGACAAGCCGGCATCTTTCTTTCAAGACACACCTCTGGACCTGCAGCGCCAGCTCTTCATGAAGCTCAGCGGCACACACTCTCCGTTCAGGGCCCGGTAGGCCTCCCATCCTCAGCTGCCTTCTCTCCTGCTCGCCACTGCCCTGGCCTGTCCCCTTCTCACTGCAGACCTGGGAACCCACTCACCcaggggttggcaaagtaaggctacaggccagtctcctgcttttgtaaatcaagtgtcattgggacacagcacactcattaacttctgagttgt s mm3.chr16 4699035 480 + 98986639 TTTTGAGAAGCCAAGG-GGGAGGCAGTAGACTTTTTTCCTCTCCCAGCTATGTGGCCTATAGGACATTTTCTTGCTAAAATA----TCTGCACCATTCTAAGGAATTTTCA-----TTTCTTGTC----------TCTTGGATTTTTCCCAAACTCTCTTGCTTTTTGGGATCCTGCTGTGCCCTC--TTGCTTAGAttttttttttttttttttttGCCCACTC-------------CCATCTCATGTCAGGGCTGTGACGCTCTACGACAAGCCAGCATCTTTCTTTAAGGAGACACCCCTGGACCTGCAGCATGAACTCTTTATGAAGCTGAGCCACACGTACTCTCCTTTCCAGAGCTGGTATGTCTC-------------TCTCCCCTCTTTCT----GCCGTCCTG----GTCTC-------CTGCAGACTTGTGGATTCACTCATCTAGAGG-CAGCAAACTAAAGCTAT-Agcctgtcacctattgctgtaaa-aaggttttattggaacacagcccacccattcacctctgtgttgt s rn2.chr10 98097835 452 - 106208427 TTCTGAGAAGTCAAGGCAGGAGGCAGGAGGCTTTCTTCCT-TCCCAGCAGTGTGGCC--TAGGATGCTTTGGTGCT-AAATA----TCTACACCATTCTAAGGAAT----------TTTCTTGTC----------TTTTGGA-TTTCCCCAAACTCTCTTGCTGTTTGGGATCCTGCTGTGTCCTC--TTGCTTAGA-----------TTTTTCTCTGTCCACCC-------------CCATCTCATGTCAGGGCTGTGACTCTCTACGACAAGCCAGCATCTTTCTTTAAGGAGACACCCCTGGACCTGCAGCATGAACTCTTCATGAAGCTGAGCCGCACATACTCTCCTTTCCAGAGCTGGTACGTCTC-------------CCTTCTCTGT-----------GTCCT-----GTCTC-------CTGCAGACCGGCAGATTCTCTCATCTAGAGA-CAGCAAACTAAAGCTAT-GGCCTGCCACCTACAGCCGTCCA-AAGGTTTCATTGGAAAACATCCCACCCATTCACCTTTGTGTTGT a score=24118.000000 s hg15.chr4_random 560314 570 + 1219494 ctacagccgcctttgagctgcaatagcagaatcgtgttttgcaacagagaacctgtggcccgcaaagcctgaagtattta-ctctctggccctttaagaaa-tgtttgtggacccctgCGCTGTCTTACTCTCCTGCCAATGGGTTCCCAGGCCTGTGGCAGGACCTGTGGACCTGTGTGTCCCCTGGGGTGTCTCATGGGGCTAAGGAGGGGACCTTTGTGCAGGTCCACGCACCCTGAGGTGTGCCCCTGTG---TAAGCT-------GGGGTGGTGTGGGAGGGCGTCCCTGCACCCTCATCTTGAGTCCAGGGGATGATAAgacagtaagtcccgtggagaaaaggaatgagtcagtcttgtttgctgttgtaaacttatcacccagcaACAATATTAGAGAAAGCAAGCCCAGGCCTCGGATGGCAGGGGTGACCTGGTGCTGCTGATGTGGCCGGGCACCCCAACCTTTGGGAGCCTGCAGGCCTTGCCACGGCAGGAGATGCCCGTCCTGGGTCCTGGGCCTGCTCTGTGGCCTCTCACAAGCTTTTTTCCTGCTCTTTCAGCTCAGAACCTGAG s mm3.chr16 4699644 378 + 98986639 CAGTGGTTGCTCTCAAATTGCAGCAGTGGAACTGCATATCACAGCAGTTGA----TGGCC--CAAAACCGGAAGGATCGTACTCTCTGG-CCTTTAAGGAACAGCCTGCTGAGCCCTGGGCTATCTTGTCCTGCTGTCAGTGGGTTCTTG----TTGGGCAAG------GGACCTGAGTGTCCCCT-GGGCATCTCACTGGGC-AGAGAAGGTACCT--------GCCCATG---TCTACTGTGTGCTCCTAGGAACCGAGCATGGCTG-GGGGAGGTGGCCGAGTATATCCTTAC------------------TGGGATGCTGAGCAGGCAGG----GTGGAGA-----------------------GCC--TATGGACGTGGCACTGAGTAGT------------------------------------GGAGTG----GCTGTTACTCATGTCA-----------------------TCTCCAGTGCTAGCAAC--CAGGAG---------------------------CTGTG------------------------------AAGTCAG----TGGG s rn2.chr10 98098411 373 - 106208427 CAGTGGTTGCTCCCAAG-TGCGGCAGCGGAACTGCGTTTCACAGCAGTCAa----tggcccacaaagcctgaagtatctt-tactctggccctttaagaaactgcctgctga-cccTGTGCTATCTTGTCCTGCTGCCAGTGGGTTCTTG----TTGGGCAAG------GGACCTGAGTGTCCCTT-GGGCCTCTCACT-GGC-AGAGAAGGTACCT--------GCCCATG---TCTGTTGTGTGCTCCTAGGACCTGAGCATGACTACTGGGAGGCGGGTCAGGATATCCTTGC------------------TGGGGTGCTAAGCAGGTGGA----GTGGGGA-----------------------GCC---GTGGAGGTGGCACTGAGTGGT------------------------------------GGAGTA----GGTGTTACCCATGTAA---------------------------CAGTGCCAGCAGC--CGGGAT---------------------------CTGTG------------------------------AGGTCAA----TGGG a score=48206.000000 s hg15.chr4_random 560885 642 + 1219494 ---ACCCAGCCACGGAGCGGTCGGCCTTCATGAAGAGGGATGCTGGGAGCGGGCTGGTGATGCGTCTCCACGAGCGGCCAGCCCTGCTGGTCAGCAGCACAGGCTGGACAGGTCTGCACGACCCCTGCAACACTTGGGGTTGGTGTGACAGGCACCTGGCCAACCTGTGTTGTCCTCACACCTGCCAGTCCTTCATGCCCCCACCCTGCCACGGTCTCAATGAGAAGGGGAGGTCGTGAGAGCTGTAAGAGGGGTGTCTAGAAACAGGACCCTGACATTCAATTCTCTTCTCATAGAGGACGAAGACTTCTCCATCCTGCTGGCAGCTTTAGAAAGTAGGTGTGTGGCTGCGGTGAGGAGCTCTGGGCTTGTCGGGGGCCACTGAGCTGTGAGCTGCTTGCCTGGCCT------GCAGCATGTT------CCTGTCCCTGGCCACTGGGTGGGGCAGCCTGGGGACAGTGGGGATGGTGGAGGTGG---GCCGC-CTTGAATCCCCAGTTGGGTCATTGAGTGACCAGGCCCTCAGGCTGAAATGCCCCCTCCAGGAGAGTATTTCACAGAGGCTGGTGGCCTCCCCACCAGAGCAGTGCTCTTTCTCCACCTGAACAGGTGACTCTGGCTATTGTTTATTTAAAAGTTTTTTTCTGAATg s mm3.chr16 4700128 518 + 98986639 CACATCCTGACACAGAGAGGTCGGCCTTCACTGAGAGGGATTGTCAGAGCGGGGTTGTGAGGCGTCTGCATGGGCGGCCAGCACTGCTCGTGAGCAGCACAAGCTGGACAGGTCTGC----TTCCCCTGGCACCTGGG--------------------------CTGTGTG----------------------------CCCAGCTTGCTTTGGGATCCA-GGGATGGGTATCTGAGAAGGGTGGGAAGTTGGGAGGC---AACTATGACTC-------CTTTTCTCTCCCTGTAGAGGACGAGGACTTCTCCATCCTGCTTCGAGCATTAGAAAGTAGGTGTGTGGCTGC-ATCAGCAGCTCAGAACTTGTTAGGGGCTA-----CTTCTAGGTCCCTACCTGGCCTTTTGTGGAACCCTGTCATGTGGTCTGCCCCGGTGTCATGGGTAGGCCTGTTT-GAGATGTTGGGGAGGGCATGGAAAGCTTACTGCTCTTATGT---------GGTCACTGAGTGGCTAGACCCTCAGTCTGATGTATC--------------------TTGAGACTAGCAGCC------CCTGGGAAGCAGCCCTTC-------------------------ACTTCTTACC----TGTTTTCCCCTGG--- s rn2.chr10 98098878 489 - 106208427 CAGACCCTGACACGGAGAGGTCGGCCTTCACTGAGAGGGACAGTCAGAGCAGGGTTGTGAGGCGTCTGCATGGGCGGCCAGCACTGCTCGTGAGCAGCACTAGCTGGACAGGTCTGC----CTCCCCCAGCACCTGGG--------------------------CTGTGTG----------------------------CCCAGCTTGCTTTGGGGTCCA-GGGATGGGTATCTG-TTAGGGTGGGAGGTTGGGAGGC---ATCTTTGACTC---CTCTCTTTTCTCTCCCTGTAGAGGACGAGGACTTCTCTATCCTGCTGCGAGCATTAGAAAGTAGGTGTGTAGCTGC-ATGAGCAGCTCGGAACTTGTTAGG------------------------------CCTTTGT-AAAGCCTGTCACGTGGTCTGCCT--GTGTCTTGGGGAGGCCTGCTT-GAGATGGTGGGGA-GGCATGGA------ACTGCTCTTGCAT---------GGTCGCTGAG-GGCTAGGCCATCAGTGGGATGGATC--------------------TGGAGACCAGGAGCC------CCTGGGGCGCAGCCTCCC-------------------------ACTTCTTACCAGCTTATTTTCTCTTGG--- a score=7486.000000 s hg15.chr4_random 561812 85 + 1219494 TTCTACCAGAAATTCCGTGTAGAATTGTTTCTTTTTTTAAACACAGAGTTTGAACAACTGACTCTTGACGGACACAACCTTCCTT s mm3.chr16 4700646 63 + 98986639 TTC---------------------TTGTGTC-TATTTTAAAAATAGAGTTTGAGCAACAAGCACTCACTGGAGACAGCCTCCCTT s rn2.chr10 98099367 59 - 106208427 TTG---------------------TTGTT-----TTTTAAAAATAGAGTTTGAGCAACAAGCACTCAGTGGAGACAGCCTTCCTT a score=2893.000000 s hg15.chr4_random 561897 153 + 1219494 CTCTCGTCTGTGTGATAACAGGTACCGCCTGGGCCCCTGGGTGTCTGTGTGGTTGGGGGATGGTGGATGGGGAGG----GGCACGCAGCCTTTACCCTgtgcttcccacgatcttgtctccttaatcctcactgcagctctctgccatagggac----------tta s mm3.chr16 4700709 162 + 98986639 CCCTCGTCTGTGTGATAACAGGTACTAACAAGAACACCATG-----GCATGGTTGTAGAAGGGCGGAGGGTGAAGAATGGGCACAGGGCCTTTACAGGACATCTCTGTAGACACTGTCTTGTTGGTCATCACCAGAGTTCTCCAGGGTAGTTCTCTCTTCCTCTTTa a score=25998.000000 s hg15.chr4_random 562485 891 + 1219494 ATGTCATTGGTGCCTTAACCAAGCGTCTTTTAATTTTTTAAACGGAAGAGCCCCTGTCCCACAGTTACTGCTGCTGAGCCCTTTCAAGGTGACTCAGTGAGGAGGGAGAAAAGCGGAAGCGGTGTGGGAAGAGGCGGGGTCTGGGCCAGCTGCTGCTCCTGCTCT--CCTCCCTCCTCTGGCCTCTAGGCTCCCAGGAGTGGTTTGGAACCTGCGCCATGTGCTCTGGAGGCTGTGGCAGGGCAGGGGCGTCTTGGAACCTGCGCCATGTGCTCTGGGGGCTGTGCCAGGGAAGGGGGAGTCCTCGTGTCCCCTGCGCACAACACAGACAGAAGGCTGGATCCACCCAGTGGGCGGTCGGGTGCCAGGCC----------------------AGTGCTTACTCCGCCATGTTTGCAGCCCGAGGCCAGCTGGCTGCAGGTGCAGGACTATGCCTCAGGGGTCAGGGTGCACAC-ACCCCTGCATGTCTCGGGG-CTCCTGGGTAGCTTCTGGAAGGGCCCAGATGGGGCCTGACTGGAGCTGCCGAGGGGTGGAGCTTCTGGGAAAAGGATCCCTCCTAGGGG-------GGAGTGTCTTGAGCCTGGGGCCATGTGGCAGGGACAGAGACGGGTCCATGGCAGTGTCTCCTCTTCTCTGTGAAGGCAAAGGGCCTCTGAGGGAGTATTACAGCCGCCTCATCCACCAGTAGCATTTCCAGCACATCCAGGTCTGCACCCCCTGGCTGGAGGGCCGAGGACTACCC-CCGCTTCTAGGTGAGAGGCCAGCGGGAGGCTCAGGGAGGAGGCAGGGCCTTAAGCAGGGGGAACAGGGGTGGGCAGGATGTACTTTTTCTGAAAAGGTGGCTCTGGAGGCCACTTGGGCACGGGACCTGGGCTCTGGCTGAACTCCCGGGAGGAGGCT s mm3.chr16 4701182 539 + 98986639 GTAT--------------------GTCTTCTGTT---------------------------CATTCAC-------------------------------------------------------------------AGGGTTAGG--CAGCTAC--ATCCTCCTGTTCCCTTC---------CAGCTGAGTTCCCA---------TGGGACC--------------------CTGTGGGGAGTCAGG-----------------------------------CATGCTAAGGATGGG-------CTGTGTCACTGGTGC---------------GGGTGGA-------------------GATGCTGTGTC------------------------------------------------CCTGTGCCAGCTGGCT---GGGGTATGCTTA------------------GCATCC-AGCCATGGG-ATGTCAGGGTCT-------------------------GAGGTGGCC--ACTGGTG-------GGGGTGG---TCCTGGGAAAGGG-----TCATCGAGTATCAGCTGGAGCAGCAGGATCT----GCCCACCGGCAGAGGTGGACA-GTGGCCAGGGCAGTGACTTTGCTTCTCTGTGAAGGGAAGGGACCGCTCAGAGAGCACTACCGCCACCTCATCAGCCAGAAGCACCTTCAGCACGTCCGGTTCTGCACCCCATGGCTGGA-AGCCGAGGACTACCCACTGCTTCTAGGTGAGAG------GGCGGGCTGCAGGCGAAGGCAGA-----AGCCACGGTGCTCCACGgtgcacacagtgcac----------acagtgcacacagtgcacacagGGACATGTTACCAGTCTGTCTGCTGCAAt-------------- s rn2.chr10 98099706 547 - 106208427 GTGT--------------------GTCTTCTGTT---------------------------CAGTCAT--------------------------------------------------------------------GGGTTAGG--CAGCTA---ATCCTCCTCT--CCTCC---------CAGCCGGGTTCCCA---------TGGGACC--------------------CTGTGGGGAA----------------------------------------CATGCTAAGGACAGT-------CTGTGTTACTGCTGT---------------GGGTGGA-------------------GATGCTGTGTCTATCTTGCTGGTGTCCTAGCATTATCCTTACCCCTTTGTGATCTGTAGCCTGTGCCAGCTGGCT---GGGGTGGGCTTA------------------GTATCCTAGCCATGGA-ATGTCAGGG-CT-------------------------GATGCGGCC--ACTAGTG-------GGTGTGG---TCCTGGGAAAGGG-----TTGTTGGGC--CAGCTGGAGCAGCAAGACCT----GCCCACTGGCAGAGACAGACA-GTGGCCATGGCAGTGTCTTTTCTACTCTGTGAAGGGAAAGGGCCGCTCAGAGAGCACTACCGCCACCTCATCAGCCAGAAGCACCTTCAGCATGTCCAGTTCTGCACCCCATGGCTGGA-AGCCGAGGACTACCCACTGCTTCTAGGTAAGTG------GGCAGGCT--CGGCGAAGACAG-------GCCACACTATCCCATA--------AGAGCAG----------ACAG-----------------GGAACATGCTACCAGCTGttttgctgtaat-------------- a score=53019.000000 s hg15.chr4_random 564553 482 + 1219494 AATTGTGGTTACGTAGAAA--------------AAGTGTCAACTTACA----------------TTTTCAG-------------------------ATGTCCCAGCC-------AGACCATGTGGCTGCTTGGCCAGCTTAAGCCACTTGTGCTTGGGGC---TGCGGGGGGCCTTATCTGATTTTCACTCCCCTCGGGGGA------TGCTGCCTCACTGTG-----CTGGGAGGATTTGTGTTCCCAGGGCAGAGACCAGCTCTCTGACCGCACCCCTCTTGCCTAGCAGGGTCGGTGGACCTGGGCGTCTGTCTAGACACGTCCTCCAGTGGCCTGGACCTGCCCATGAAGGTGGTGGACATGTTCAGGAGCTGTTTGCCTGTGTGTGCGTTGTGAACTTCAAGTGGTAGGAGCAGAACCCGAATCTTTCT--GGGGATAGCTTCACAGATCCACCGCTGAGGGGGAAACAGTGCAGAGCCAGCTGC-CCACAGTGAGGCCCTG-CCCCTTGGTCAGTCCAGCACACAC--TGGAGGCCATGAGGAGGAGCCCTGTG-GTTA s mm3.chr16 4702450 506 + 98986639 AATTATGGCTAAGTATGAACAATAAATCAATACAAGTAAAAACGAACAAAACCAAAGCAACTATTAGGCAG-----------------AGTCAACCATGTTTTAGCCTCTGGTTAGGCTGCCTGGCTTCTTGGTCAGTTTATGCCATTTGTGTTTGGGGACAGTCTCAGGGACAGCTTCTGATTTCCACTCATTGTTGGAGATGGGGGTGGGGTGTCACTGCATAGGCCTGGGAGAGCGTGT---------------CCTAGTGTTTTGACTGT----------CTTTGCAGGGTCAGCGGATCTGGGTGTCTGTCTACACATGTCCTCCAGTGGTCTGGACCTGCCCATGAAGGTGGTGGACATGTTTGGGTGCCACTTGCCTGTGTGTGC--CGTGAACTTCAAGTGGTAGGTGCAGATACCAAGCCTTACTTGGGGCATATTCT---AGAGCAGCAGTT------GGCCCTGT---GGTTCTGCTGCACTCCAGTGAAGGTCAGTCAGCTTGGTGCGACCACTCCATGTCATGCCAGCCAC--TGAGGTGCAAAATG-GTTt s rn2.chr10 98100962 509 - 106208427 AATTATGGCTATGTAGAAACAATAAATCAATACAAGTAAAAATGAACAAAACCAAACTAACCATTAGGCAGTGTGAGAAGGATTCAGTGGTCAACCATGTTTTTGCCTCTGGTTAAGCTGCCTGGCTTCTTGGTCAGCTTGTGCCATTTGTGTTTGGGGA-AATCTCAGGGACACCTTCTGACTTCCATTCATTGTCTGGGA------------GTCCCTGCGTGGGCCT-GGAGAATGTAT---------------CCTAGTGCTTTGACTGT----------CTTTGCAGGGTCAGCGGATCTGGGTGTCTGTCTACACATGTCCTCCAGTGGTCTGGACCTGCCCATGAAGGTGGTGGACATGTTTGGGTGCTACTTGCCTGTGTGTGC--TGTGAACTTCAAGTGGTAGGAGCAGATTCGGAGCCTTACTT-GGGTGTAGTCT---AGATCAGCTGTT----GGGGGCCTGT---GGTTCTGCTGAGCCCCAGTGACGGTCA--CAGCCTGGCTCGTCCACTCCATGCCATGCCAGTCAT--TCAGGTGCAAAATGTTTTT a score=49319.000000 s hg15.chr4_random 565161 940 + 1219494 TATGAAA---AAAGAA----AGCACCT---TAAATAC-TAGAACTCCACTCGGGGCTTTTGCTCCTAGAGTAGAAT--TGGC------GGGAATTGCCTGCAG----------------GCTTACAT-------------------------------------------------------------------------------------------GGT------------------TTTCTTTGTTTTTCTCTCCCACCATGTCCCTTTTGGCCAAGCTCACATGGTGGGTTTGAATGAGTTAAATGAGTGTCATGCTGTGGCCTCACTGCACCCAGCATAGATGGGTGTTTGGAAGGGTGGCGTTAGAGGAGATTCTAGAAGCAGTAGCCCCAGCACAAGTTGAGCCCTTGGCCCCTGCTCAGGAGCCGGCTCCTGGATGG-GATTCAGGGATTCAAGCCCCTCGTGTGAGCTGAGCTCAGGGAACGTCTTGATCAAATCT---GGTGCCCTAGAAAAGTCATCTTTTATGTGCTGAACCAGTCCCCAGGGGGTTG---CCTTACTTGTTCCACAGCCATGGAATTAAGAAAAACATACAAAAATAATTCTTCAGTCCTTGAAGAGCATCCAGCACAGAAGGTACAAACCCTCCTTAAGGCTCCCTCCT-CAAATCGGTTTGGCCATTTTGATGTGCACTCTCCCAGGCCTTTATACCCTTCAGATGCCAAATCTAAGAACCAGCTCCCAGAAACCACACCCCCTGTTCCAATCCCCAGCCTGGCTTGAGCGTGGGGTGCGAGGGGAGCCCAGGTGGGCACCCCAGGGGTCTGGTGTCTTCTCCAGGCAGCTCTCAGGCTCCCTTGGTTCTCTCTGCAGTTTACATGAGCTGGTGAAACATCAAGAAAACGGCTTGGTCTTTGAGGACTCAGAGGAACTGGCAGCTCAGCTGCAGGTAG-----CCACATCTGCCACTAAGCCAGGGTGCGCAGGGTTCTGGAGACTGGCACCGAGCCACGCTCCCTGATCCCTGCTTCCCA--------CAGTCGGGGTGGGACCATGTGGGGTCTGGCGGAAAAGCTAGGGAGGGAGCA s mm3.chr16 4703189 911 + 98986639 TATGGGACATAAGGAACTTGAGCATCTGTGGATGCAC-AGGGGCTCCAGGAAGGAGGCCTGCAC--AGAGTGGGAC--GGGCACGGCTGGGGTTTGCTCATGGCTAGCATGCTACTCAGGCTTACCCTGGGAGGGGGAGGTGGGACGGGCACAGCTGGGGTTTGCTCATGGCTAGCATGCTACTCAGGCTTACCCTgggagggggagagggagggggaggTGGCCAGATGCGCTTGCAGGTGCCTTACTTTACCTCCCTGCTCTG-------TAGCCGAGCTCTTAGGACTGCATTGGATTA-TCACACCAGTGCAGTTCTGGGACTCCACT-TCCCCGGCCAGGGCGGATGT----------------------GAGCACAGAGGCTGCAG-------------------CTTGGCAGCTA----GGAAGCAGCCTCTGGATGG--------------GAAAGCCTTGAGTGAGCCAAGTTCAGGGACTGTCAGGATCAAATCTCCCAGTGACTCTGAAAAGCT-ACCTTAATGTGTGGAGCCACGTTCAGACATGCTGGGACCCTAGCTCTCAGGT-----TGGAGTGGAGAAAAA-ACACAGAAACCATCTC-----------------------------------AGGCCACCT------TCCCTTCTCCAAATCAGCCTGG-TGGTTTGACATGTGCCCTTGTAGGCTTTTCTGTCC----------------AAATACTTGCGCTCAGAACAGAGGCCTATTTCACC----------------------TGAGGGGTAGAAATGGCTCCGCTCGGTTCCC-----------TTTCTTCTCCAGCTGGCTCTCAA-CTCCCTT-GCTCTCTCTGCAGTCTGCACGAGCTAGTAAGACATGGAGAGAATGGTCTGGTCTTCAAGGATGCTGAGGAGCTGGCAGCTCAGCTGCAGGTACTGGGTCTACTCCGTCCG------TGTGGGGCTGGGTGGTTTGAAGCCTGGCATT--GCCA-GCTGCACGATCCCTGCTTCCCACACAGGGACAGCTGTGGTAGAAC--TCTGGGGTGTAG----------AGGAAGGGAGCA s rn2.chr10 98101716 764 - 106208427 CAGGGGACATAAGGGACTCGAGCATCTGTGGATATACAAGGGGCTCCAGGATTGA-GTCTGCAC--AGAGAGGGACAGGGGCATGGCTGGAGCTTGCTCAGAG------------------TCACGCTGTGAGAGGGGAGT-----------------------------------------------------------------------------GGTGGCCAGAGGTGCCTGCAGTTGCCTTGATTTACGTC----------------TGGCCGAGCTGTCATGACTGGGTTGGATTA-TCACACCAGTGCAGATCTGGGACTCCACT-CTCCTGGCCAAGGCAGACGT----------------------GAGCATAGAGGCTGCAG-------------------CTTGGAAGCTG----GGAAG--GCCTCTGGATGGGAAGCTCAGGATGTGAAATCCTCGTGTGAGCCAGGTTCAGGGTTTGCCAGAATCGAATCTCCCAGTGACTCTGGAAAGCTAACCTTACCGTGTGGAGCCAAATACAGACTTGCTGGAGCCC-ACCTCTTAGGC-----TGCAGTGGAGAAAAA-ACACAGAA-------------------------------------------AGGCCACCT------TCCCTTCT-CAAACCAGCCTGG-CATTTTGACATGTGCCCTGGTAGGCTTTTCTGTCC----------------AAATACTTCAGCTCAGAACAGAGGCCACCTTCGCC----------------------TGAGGGGTAGTGGTGGCCCTGCCCGGTTCCT-----------TTTCTTCTCCTGCTGGCTCTCAA--GCCCTT-GTTCTCTCTGCAGTCTGCATGAGCTCGTGAGACATGGAGAGAATGGCCTGGTCTTCAAGGACGCTGAGGAACTGGCCACTCAGCTACAGGTAGTGGGCCCACTC------------------------------------------------------CATGATCCCTGCTTCTCACACAGGG-CGGCTGTGGTGGAGC--TCTGGGGTGTA-----------AAGAAGGGAGCA a score=53667.000000 s hg15.chr4_random 566431 1361 + 1219494 tagactgggtccccta------gtctctgtcagaacc--atggtactctgtt----ggggtgtgaaagt-agccacagatcatctgtagattaaggggtgtggctttgttccaataaatctttatttacaaacacaggctgtgggctggatttggcctgcaggctgtagtttgtga-tccttgATTCAGACAGTTTAGCAAGGCTGAAAAGAACACCGACACCCCCTT---GTTACCCACAGATGGGTGGGACTTGGCCAGAGGCCAAGAGGAGGGTGCTCGCAGGGGAGCATACAGCATGAAGAGGCCGGGAGGTGCCCCAGGACACCAAGTGTGGGAAAGTGGGACATGCGGGGAAGTTTCCAGAAAGCGTGATGTCAAGTTGGAGGCGGAGCGCTGCTGGGGCGTGAAGAGTCTTGAGTCCAAGTGAGGGAGTTAAGAACTTGGTAGGGGCTGTTGGTGGGTCGGGCACCTGGGGTCAGCCAGGTGGTGACCTGGGATGCGGTGGGGACAGGCAATGAGGTAAGCTCTGCTCTTTAGTATTATGCAGATGCTTTTCTCAAACTTTCCTGATCCTGCAGGCAAGCTAAACCTGTTCCGGAAGAACCTGCGGGAGTTGCAGCAGCTCCGATGGGATGAGAGCTGGGTGCAGACTGTGCTCCCT----TTGGTTATGGACACATAACTCCCGGGCCAG------AGGCTAAAACCCCAGGGCCCCTG---CTGTCCTTCCCGCAGCTTCTTCTTGGAGTCTCAGGGCAAACCCTTTCAAGCAGCGCCTCCCAGTGGCCAGAAGCTGAAATGACGGCAGT-GGTGCCGCCTGGTGAGTGAATTGCTTCTGTGACCCGGGAAGCTGTGGTTGGCTCTGATTTCTTTTTTGGAGGCTTGGAAACACTTCCTCTCTTCTTCTGTTCTTCACGCCCCATGCCCCTGCTAGCGTACTACTGTTCTGTGACTTCCCTGTGACCTCTG----CAGTACTCCTCAT-CCTGCG-TTTGGTCTCCAGGTGTCGCCTTTCTGCCGTGTTCCTAATATTTTGATTCCTGTCTTGAAAAAAGCACCTGCTGCACAGTAAGCCCAGGGATGTGGCAGCTGCAGCGGGCTTGGCTTTGTGAGGAACCGGGTGTGTCCACGTTGGGGGAACA-TCATACTTGATACA--CACGTTTTTATTTGCACAAAGAAAATGCTATTTTTGGAGCCAGAATTTTCATGTCTGATTTATGGTGATTTTCTTAAGAACCAGAACTGCTGGCAGAAAGGGGGCACCCACA-CGCTTAGATAGCCGATGTCTTATTAGAGGGCAGTTTGTGGTTCCTGATTTGGAAATTAACATTCTCCAAACATTCCAGTCCAATGAAAGT------TTTATCCGCTTTCCCATGTAAAAATT---------- s mm3.chr16 4704285 997 + 98986639 ---TCT--GTCCTTAA------GTCTGGGTAAGAACT--GCAGTAGCATCTG-GCATGGATGGGAACACTAGCTGTGCA-CATGCGCACAT---------AATctgagttccaataaaactttatttacaaaggcag---gtggGCAGGACCCAACCCG------------------TCCCTGAT--AGACACACTA--AAGGCT-----------------TCCATCTTAACTGCATCTGCAGGGGTGTG-------TTGAGGATGGGAGGGGA--------AACTGAGAGAATAGCAGGTGGAGGCTAGCCATT-CTCTAGGGCA---------GGGCTGTGGG---TGAGTAGATGAATCCATCAAG-----TGTCGAGTGAGCGGAGGGGCACCACTGG---------------------ACACGAGCAAG--GAGGCCGGGG------------------------CCTGGTG---------------------------------CAGG----GAGCTGAGTTCCAGTTTTCCTGTTTCCCTAGATGCTTTTCTCAAAGTTCCCAGACCCTGCTGGAAAGCTAAGCCAGTTCCGGAAGAAACTGCAGGAGTCGGGGCAGCAACGCTGGGATGAGAGCTGGCAGCACACTGTGCTCCCTCTGCTCGCTCACTCACAGATGACCCCC-------------AGG------CCCCATCCACCCTGTGGCCACCCTTCCTGC------------------CGGGG------CTTTTG---AGTGCCCCCTAGTGGTCATAAGCCTGAG-GACAGCAGTGGGCGACAGCTA--------------------------------------GGATCTGGCTACTGATCTGGCAGCT-----------------CTCTTCTGTTCT---------------------GAGCAC-----TTCTGTTACTT-CCAGTGTCC-CTG----CCAACTTCTCAGTCCCTGGGTTTTTGTTTCTGGA---------CTTGTCACATCCCTTGCGTTCTGGTT-------------------CTGCT-----GTGAGCTCTGGGATAGCCTGTGTTCACTGGGTTTGGCTGAGCAAGG--CTGAAC-TGT-----CTGACAGGACAGTCATACTTAATAAATGTATATATTTATTTGTACAATGGAAGTGTT-TGCTCTGAGCCTG--------TGTCCA---------------CTCGAGA---TGAGCTGCT----GAGGACAGGCACCAGCA-CTC------AGCCTGTG-CTTACT-----GTACACTTGTGCTGTTATTT-------------------AACATTCCTGCTCAACAGAAGCCTTTCCGCTTTCCGCTTTCCCATGACAGTCATttttcttttc s rn2.chr10 98102491 1005 - 106208427 ---TCT--GTCCTTAGAGAACTGATTGTGTTAGAACTATGTAGTACCATTTTCATACGGATGGGAATAC-AGCTGTGGA-CATGCGCAGAT---------AGTctgagttctaatagaactttatttacaaagccag---gtgggcagaacccagcctgaaggctgcagtttgctggtccctgAT--AGATGCATTA--AAGATT-----------------TCCATC---ACTACCTCTGTACAGTTGTG-------TTGAGGATGGGAGGGGG--------AGGGAAGGGGACGGCAGGTAGAGGATGGCCACT-CTCCAGGGCA---------GGGCTGT--------AGAAGATGGACCCATCCAG-----TGTCCAGTGAGGGGAGGG-CACTGCTGG---------------------ACATGAGCAGG--AAGAGCCTGG------------------------CCTGGTG---------------------------------CAG------AGCTAAGT-CCAGTCTGCCTTTTCCTCTAGATGCTTTTCTCAAAGTTTCCCGACCCTGCTGGGAAGCTGAGCCAGTTCCGGAAGAGACTCCAGGAGTCAGAGCAGCTACGATGGGATGAGAGCTGGCAGCAGACTGTGCTGCCGTTG-TTGGTCACTCACAAATGACCTCCAGGCCCAGAGGGTAGG------CCCCATCCATCCTGTGCCCACCCTTCCTGC------------------CAGGG------CTCTTG---AGTGCCCCCTAGTGGTCAGAAGCCTGAG-GACGGCAGT-GGTTACACCCA--------------------------------------GGAAAAG---AATCATCCAGCATCTGAGAAG-----------CTCTTCCGAACT---------------------GAGGAC-----TTTTGTTACTT-CCGGTGACC-CTGCCAACCAACTTCTTCAT-CCTGGGTTTTTGTTTCTGGA---------CTCTTCACATTCCTTGTATTCTGGTTC---TGCTGG---------CTGCT-----GTGAGCTCTGGGATATCCTGTGTTCACCCGGCTTAGCTGAGCAAGG--CTGAG----------CTGACAGGACAGTCATAGTTAATAAATTTACATATTTATTTGTACAGTGGAA-TGCT-TGCTCTGAGCCTG--------TGTCCA---------------CCCCAG----TGAGCTGCC----GAGGGCAGGCACCAGCGTCAC------AGCCTGTG-CTTCCT-----GTGCATTGTGGTTGTT------------------------------------AACAGGA--------GCTGTCCGCTTTCCCACCACAGCCATCTCAGTTTTC a score=24897.000000 s hg15.chr4_random 567803 294 + 1219494 AGTGACTTGATCCTCACAATCCCGTTGAAGTCGTGTGTGAGTCCTACAGTATTAGGTTCAGCATTGCCATCTCCAAGTGCTCTTTGTAGGGAAACAGTTTCTGGTCATGACAAGCTTCCACTTCCCATCTGATCCTGGCCTGGCCTGGAAACAGAGCACATGTGTTTGAGGATGGCGGTGTTTGGGGACAGGACATGAGCGTATTGTGTGGGGCTGCTAGGACAGGCGTGGTGTGGTGGGGGAGTGTCCAAGTCAGTCTACTTGTTTCACAGTTTCCCAGTCCCACCCAGGTAC s mm3.chr16 4705453 245 + 98986639 AGTCATCTCATTTTTCAAATCACCTTCAAACACCATGGCGACTGGTCAGCACCAGCTTCAGGATTACGATGGCTGAATGCTCTTCGTAAGGGAACAGTTTGCCAGTGTGAGGGGGCACCTCTTCCCAGTAGATTCCAGCACGGTCTAGATA-AGAGTACAGAGATCTCAGGA--------------------------------------GGGCAGTTGACACAGGTGTGCTGT---------GTGTTCAAGCTGATTTGCTTG-GCCACAGGTTTCCAGGCCCGGGTAGATGC s rn2.chr10 98103480 240 - 106208427 AGCCATCTCAGTTTTCAGATCACCTTCAAACACCATGGCGACCGGTCAGCGTGAGCTTCAGGATTACGATGGCCGAATGCTCTTCATAAGGGAACAGTTTGCCAGTGTGAGGGGCCACCTCTTCCCAGTGTATCCCAGCGCGGTCTAGATA-AGAGGACAGAGATCTCAGGA--------------------------------------GGGCAGCTGACACAGGTGTGC--------------ATTCCAGCTCACTTGCTTG-GCCACAGGCTTCCAGGCTCAGGTAGACGC a score=79865.000000 s hg15.chr4_random 571320 1116 + 1219494 GGGGACTCAACTAGCTCAGTGGTGAACAGCTGGCACGTCTGTGGGTTGTGGACGGTAAAGGCCACGTAGACCTCAGGAGCCCGCTGGTGCTCCCGGCAGGCAGCCAGCCTCCGCAGGACCCCGACTAGCGACACGATGGCTTCTGGGCAATACAGCACGTCTA-CGGTGAAATCTTCAGGTTACTGAAAGGG------ACAAGT------------GGAAAGTTCCAGGTCATGCTGACCACAGCAGCAGGGCGAGGCCAGAGAGGCAGCGGTCATATGAGACTATTAGATGCCATTTAAACATTTGGGCCATTAGATGGAAAGGCAATTACTACGGTGAAAAAGGAGAACCCTTAGAGAAAGCTGCAAAAGAC--------CGAAGCAAA----AGAAAAAA-----ATGT---CCAGACTCACT--GGTGTTCCTTAAAAAACCAGCT------CTGGTTTTCGGCCTATCTAGAGGGCTTTG-AATGACACAAAGCCTGAATCTGCCATGAACTT-------------------------CGTGTTTCAGGTA---------TCCGCTGATTTG----------TCTGCTGGCTTGCAGGGGTGGGCCTGTGTCCCTGGCCACCGCT----------------GGACCTGTGGTTTTCAGGGCTGGGACCCAGGACCACA-GGCAGAG-CTCTGT--------TCCACCAGAGAGGGGACTGAGTGTGC----TGGCAGGG---------------------------------GC-------------------------------------------GAGGGGTTTTCGGTGGCCCAGCCAAACACCACCTTCTCTCAAGTGCCCTGTC---CTCATCCCAGA-------AGTGGTTGTTTTCCTCCGGTGGTCTCTGAAGGACACAG--------------GGCATGGCTCTGGGACAGAGCCA-TGTGGTGACAACTGGAACGGGAGTATGCCTGTCTCCAGCAAGAG-GGCTGTGGCTTGA------AGGTCACCTTAAGAGGCACCCCTG--------TCCTTTGATGTC-AGCCTGGAGGCCCAGAGTAACT-----CTTCTGGA---AGCCCCATCATGTCCATGCCT-GACAGCATCCATTGTTCCCTTTTCCC--AGAG-CCAAGAGCT---GGGTA-GAGCTGCAAGGACACCGCCTGCACAGGATG-----------------------------------CCCGGGGCT-----------------------------GGGCATTACCTGCTGCAATGACAACATCTGGCTG-GACGGCAGAGAGCTGACAGACCGTCGCGACGTCCCAGTCCAGCTGGGCCACTGTCACCCTGGGGCCGTCTAAGTTGGCAGTGATGTCTGCCTCTAATGAGAGGCCAT s mm3.chr16 4707468 1254 + 98986639 GGGAACTGACCCAGCTCTTCGATGAACAGCTTGCCTGTGTCCTGGCTGCGGATAGTATAGGCTACATAGACATCAGGAGCGCTC---TTCCTCTGGCAGTCCTCGAGCATCTTCAGGACCCTGACCAGTGACAGTGTCATCTCCCAGCAGTACAGTACATCTAGGAAGGAAAGGCT---GTTACTGAAAGGGCCTCCCACCAGG------------TGTGAGGGGGTGGCTGGTCTCACTCTGGGGGCAGGGCTTG------GGAGCTG---------------------CAGTATTAAGATGTGTGTGTTGTTCCTTAGGAAG----TGTCCCAGGTGAAAGGCAGGCCCCAGGAGGAAAGGCCTCTAAAGAC--------TGGAACCTC-----------------CTGTGGCCCTTGCTCACTTAGAAGCTTCATGATGAAGCAGATCCTAGCCTGGCTTTGGGCT--TTTAGAGGGTACTG-AGTGTGGGGTGTGCTG--TTTGCAGTGATCTCTGTTGTGATAGGGGAGGAAGACTCTAGTGGCCCAGGCAAA-------TCCTTTCTTTCAAAGACTCCATTCTGTTTCCTAAGAGGCTGGGGC-----TCTCTTGCCATCTCTAAAGGACACAGGACAGGGACTTAGGACCCAAATGGTTGGCAGCCAAGGCCACATGGCACAG-TGATGG--------CACATCTGCATAGAGCCAGCATGGGCAGTGTGGTTGGG------------------------------CCTGCCACCTCATTTAAACATGACCCAGGATGGTACTAACAACAGGTGGAGAAGTTGGATGCGGCCCTG-AGAGGACCACAGGCT---ACATGGCCAGTC-TACCCCACCTAAAGATCCTGGGTGGCTGTTTGTCACCAGCAG----TGGAGG--GCAGTCCTTGTGGTGGGTGGAACTGCTCTAGTGT----TCA-TATAGGAGCA---GGGAGGGAACTCAG-TGGCCTC-----AGGG-GGCTGTGGCAAGGTACTCCAGGCCA-CCTAGTGTGCTGCCCTGACACCTGTCCTGCTCATCTCAAGCCCTCTGG----GGACAGCTGGCTGTTCATGGACAGAGCCCCAGCAG---------T-GAGAGCAGCTA--------TCTCCAC--AGGGACCTGAAGCTCTGGAGTATGGGCTGTCACGTCACTGAAAGCCCAGGGTGTCTCTTTGGAGTCCTGCTGGTCCCTGCCTGCTCCACCCACAGCTTCTTCCTGCTGGAATGAGGGTTGCTGCTGGGGCATTACCTGCTGCAATGACAACATCTGCCTG-GAAGGCAGAGAGCTGAGAGGCTGTCACCTCGTCCCAGTCCAGCTGAGCCACTGTCACCTTCGAGCTGCCTGCGTCAATGGGGGTGTGCGGCTCTAAGGAGAAGCCGT s rn2.chr10 98104717 1345 - 106208427 GGGGACTGACCCAGCTCTGTGATGAACAGCTTGCCCGTGTCCTGGCTGCGGATCGTATAGGCCACATAGACGTCAGGAGCCTTC---TTCCTCTGGCAGTCAGTGAGCATCCTCAGGACCCTGACCAGTGACAGTGTCACTTCCCCGCAGTACAGTACATCTA-CAATGGAAGGCT---GTTACTGAAAGGGCACCCTGTCAGGATCTGCAGCCATAGTAGGGTGTGGGCTGGCCTTACCCTGAGATGAGCGCTTG------GGGGCAGTGGT------GGGTGGGTGGCTGGTGTTAGGA--TGTGTGCTGTTCTCTAGGAAG---ATGCCCCAGGTGAAGGGGAGGCCCCGGGAGGAAAGGCATCGAAAGACCTCTAAAGTAGAGCCTCCTGCAGCAAAATCGGTTCTGTGCCCCTTGCTCACTTAGAAGCTTCATAATGAAGCGGATCCTAGCCTGGCTTGGGGTT--TTTCGAGGGTACTGAAGTGTGGGGTGTGCTG--TTTTCCATGACCTCTGTTGTGCTAGGGGAGGAAGAC---AGTGGCCCAGGCAAACAAACACTGCTTTCTTTCAAAGTCTCCACTCTG-TAACTAAGAGACTGGGGC-----TCTTTTGCTGTCTCTGAAGGACACAGGACATGGACTTAGGACCCAAATGGTAGACAGCCAAGGCCACATGGCACAGATGATAGGAATCCTTGACATCTGCAAGGAGCCCGCATGGACAGTGTGGAGGGGCCCCTCAGCTCATGCTCTCTGAACTGGTCCCCTGCCGCCTCATCTAAACATTACCCGGGATGGTGCTAAGAACAGGTGGAGAAGTTGGATGTGGCCCTG-GGAGGACCACAGGCT---GCATGGCCAGTCTTACCCTCCTCAAAGACCCTGGGTGGCTGTTTGTTACCAGCAA----TGGAGGACACAGTCTTAGTTGTGGGTGGGCCTGCTCTAGCAT----TCATTATAGGAGCA---GGGAGGGAAATGCG-TGGTCTC-----AGGGTGGCCCTGGCAAGGTGCTCCAGGCCAGGCTAGTGTGCTGGCCTGGCA-----CCTGATCATCTT-AGTCTTCTGG----GAACAGC------TTCATGGAGAGAGCCACAGCAG---------TGGGGAGTAGCTG--------TCTCCATAGAGGGACCTAATGCTCTGGATTATGGACTGTGGACTCATTGGTAACCCATGGTGTTTCTTTGGGGCCCTGCCAGGCCCTGCCTGCAGCACCCACAGCCTCTTCCTGCTGGAATGAGTGTTGCTGCCAGGGCATTACCTGCTGCAATGACAGTGTCTGTCTGTTAAGGCCCAGATCTGAGAGGATGTCACCTCGTCCCAGTCCACATGGGCCACTGTTACCTTCCGGCTGCCTGAGTCACTGGGAGTGTGCAGCTCTAAGGAGAAGCCGT a score=15125.000000 s hg15.chr4_random 572436 261 + 1219494 TGAGAAGGACATTCCCTCGGAGCTGCTCGAGGACCCGGCTGTGACAGTCGCTGAAGATGTACGCCCGGGGGCGGCACATCTTGCAGATGGCCAGGCCTGTGAGGCCGGCGCCACTGCCAAGCTTTAGGACAGTCCTGGTGGGAGGAAAGGGGACCGTGTCTGTGACTGCACCAGGGTAAGCCTGCCTCGGTGCCCTGCCCTGCGCCCCGAGGTCACCTGTGAGTGAAGGCTGCTGGGTTCTC---GGCCCATTCTGCAAGGTAG s mm3.chr16 4708722 263 + 98986639 TGAGGAGAACGTTTCCACGGAGCTGCTCAAGCACTTGGGCATGACAGTCGCTGAAGATGTATGCTCTGGGGCAGCATGCCTTGCAAATTGCCAGGCCTGTAAGGCCAGCTCCACTGCCTAGCTCCAGGATAGTCCTGAGTGAGAGATGGGGACCTGTGTTCACAACTGCGCCAGCACCAATC-ACCTTAGTGCCCTGCTCTATGCCCCAGGGTCACCTGTCAGTGAAGGCTGCTGGGTTCTCAATGGCCCATTCTGCCAGGTAG a score=32982.000000 s hg15.chr4_random 572697 369 + 1219494 AGGGCAGCGTCCCATGTGACCAGGCCTGTGGTGCCGTGGGAGATGATGGCTGTGCTCTTGGAGAGTGTGACCGAGCCTCCCGAGGGCTGCACCAAGAGAGGGCGAGAGAGTCAGTCCAGCAATCAG---AAGACAAGTGGCATAGAAGACAAGTAGCCATCCACCACatggctgaataaaccatgacaggacc----aatc-------gctaatcagcaatgagaaacagctaactgttgacatgccatcagcttgcacaggcctcaagggtgtcatgcggcatgaaagacactcatctcag--gccatacag---gattccattcattgaacattcctgagacaacagaattctggcgatg--gagcactg-gtcagtggtggccagggg s mm3.chr16 4708985 357 + 98986639 AGAGCAGCGTCCCATGTAACCAAGCCTGTGGTGCCATGGGACACGATGGCAGTGCTCTCAGAGAGTGTAACTGAGTTTCCTGAAGGCTGC----AGACAAGAAG-GAGAATGAACAAAACCATCAGAGTATGTCTGGTGGGACCTAAACCA--TAGCAAGTG---------CTGAGCAGAATGTGATATGGGGTAGAAGGCTGTAGAAGGCactcaacaatggaaagtaacgacctccccaca-cccggcaatgtggg--gacctcaagga---tgtgataagtgcaaggagccaatctcaggttccgtgctgtgtgatccccttcatctaaca-cctttaga---------cccagtcaca--gagaagagtgtgtgtggtggacagggg s rn2.chr10 98106248 342 - 106208427 AGAGCAGCGTCCCATGTAACCAAGCCTGTGGTGCCATGGGACACGATGGCTGTGCTCTCAGAGAGTGTGACTGAGTCTCCTGAAGGCTGC----AGACAAGACG-GAGAATGAACGGAACCATCAGCGTATGACAGGTGGGACCTAAATCA--TAGCAAGTG----TGTGGCTGAGCAGAATGAGGTCAGGGT----ATGCCGGGGAatgcactcaacag------------------------cccggcagagtgggc-gatctcaaggacactgtgctgagtgaaaggaaccaatctcgg--tctgtgctgtgtgatccccgtcatctaaca-cctttagatga------cccagtcacacaggggagagtgtgtgtggtggacaaggg a score=28983.000000 s hg15.chr4_random 574006 254 + 1219494 TCTCATACCAGCAAATAGCTCCAGTGGCCCTGGGTGGACTCCTTGGCCATCAAAGTCTCCGCCAGCACCTCGTACAGCTCGTCCAAAGGCTCTGTGTGGACAGCCTCGTGCTGGGGGCAGGC-----TGAGTGAGAGC----------------------------------TTGTTTGCTTTCGTTCTAATCTGTAAAAATGGCCAGATGATTTTCGCCAGGTTTGGAGGGGAGATTTGG-GATGGAATGGTGTAATACCGGCCAGCTGCCATATAAAATATTCACTTCATTg s mm3.chr16 4709364 251 + 98986639 TTTCATACCAGCAAATAGCTCCGGTGGCACTGGGTGGACTCTTGGGTCATCAGAACCTCTGCCAACGCCTCATACAGTGCATCCAAAGGCTCCGTGGGTACAGCCTCATGCTGGGAACAGACAGCCTTAATTCAGAGA----TCACACTGACTCTTGTAAACAACCATTCCGTCCCTTGCT-TCTGTCTGCTTTGTGAATAGGATTGGGTAGCTTTCACAGCATTCGTAGTG-----CTGGTGATGGAA---GTCAAGACCGTG------------------------------ s rn2.chr10 98106608 253 - 106208427 ACTCATACCAGCAAATAGCTCCGGTGGCACTGGGTGGACTCTCTGGCCATCAGAACTTCTGCCAGCGCCTCATACAGTGCATCCAAAGGCTCCATGGGTACGGCCTCATGCTGGGAACAGACAGCCTTAACTGAGAGGCTGGTCGCACTGACCCTTGGAAACAACCACTCTGTCCCTCACT--CTGTCTGCTCTGTGAACAGGACTGGGCAGCTTTTATGGCAttcatggtg-----ctga-gatggaa---gccaaggccatg------------------------------ a score=45379.000000 s hg15.chr4_random 575211 702 + 1219494 ATCCATCCTGTATcagtcaggaaagagctcattccagcaggatcaatgcagagaattcaccagaggaactagttccaaaggtgtggcaagagctaaaccttccaacaggggcctgtggggcaacccagagatggacaagagcaggaaactccaaaccctttggcgggcaggacagagggtgtgggtgcgggttccagtgctgtttgctgggccag-----cctggtaggaatgagaatccatatgctaggagctggggctccagagaagcagctgctgcggaaaccccaggaggcagagtgagggagagacgctggcctccccttcttcccgccctGCACTGTCTCCCATGGGTCACACGCAGTTG-CAGCCAGTTGCCTGGGGAGACCCCTGCCATGCTGGGGTTTGCAAAGCAGGCCCAGAGACTGGGAAGGACGGGGGCTCCAGCATGCAGGTGGCTATGCTGTCCCA--CTA-----------CTCTGCGGACACTGCCCATAACTGACCTTTTTCATGAGTTCTGAGAGAAAGCACCGGGCATACTTGACTGACGGCGGGTGCTTCACACACACAGGATGCTTCACAGTCT--ATGGCAAAGGACAGAACGTTGGTTGCTGGGGAGAGCCCATCTGAAGTCTCCTATGAGCTTCAAGCCAACACAGCAGAGGGCAAACTCCAGGCTACCCGATCCCTCAGCAAAGATGTAGATGGACA s mm3.chr16 4710121 558 + 98986639 AGGTGCCTTGCAGAGGTTGGG--GGGATTCTGGCTAGCA-GCCTAGTTGGGAGAAT--AACA-AGATACTAGCTGGGAAGGGACTGTAAGAAC--AAACTTCCAACAGG-------GGCGCA--------------------------------------TGACTGGTAGGATGGGGGAGGAGGAGGCATCCTTCA------TTCACTGG--CAGGGATGTCTGGTTGAAAGGAGAACCT---------------TAGTTTAGGAGGAGAAGCTGCTGCTGAGAGCCCTG---------------------GCTG--CTCTCCTCTGTACTCTCCGACCATGTTCAC--------------------CAGCCCCCTGC--AAGGAAGCTCTGAC----TCAGAGCTTACACAACAACCACA------GGGCAGGGAGGGGCTGCTGGCACCTGGGGAACT---CTGTACCCCACTATGTGGCCTGTCCCCAGCAGCCACTGCCCATCACTGACCTTTTTGATGAGCTTTGAGAGAAAGCAGCGGGCATACTTCACAGAAGGTCCGTGCTGCACACACACAGGGTGCTTCACAGTCTAGACGACAAAGGACAA---GGTGGTTGCT----------TGCTCTCTGTGTCCTAGAAGCTTC------ACATGATTGG-TGGGGATT-----------GACGTTCCAGCAAAGATATGCATGGACA s rn2.chr10 98107304 558 - 106208427 AGGTGTCTTGCAGAGGCTGGG--AGGATTCTGGTCAGCA-GCCCAGTCGGGAGAAT--AACA-AGGAACTAGTTGGGAAGGGACTGTGGGAAC---AGCTTCCAACA---------GGTGCA--------------------------------------TGGCTAATAGCATCGGGGAGGAGGAGGCAGCCCTCA------TTCTGTGG--CAG--------GGTAGAAGGGAGAACCT---------------GAGTGTAGGAGGAGAAGCTGCTGCTGAGGACCCTG---------------------GCTG--CTCTCCTCTGCCCTTTCCAACCATGTTCTCTA---GTCACATACCACCAGCAGCCCCTAGA--AAGGAAGCCCTGGC----CCTGAGCTTCCAGAACAACCAAA------GGGCAGGGAGGTGGGGCTG-----------------CTGTTCCC--CTACATGGCCCAGCCCCGGCAGCCACTGCCCATCACTGACCTTTTTGATGAGCTTCGAGAGAAAGCAGCGGGAATACTTCAGAGAGGGCCCATGCTGGACACACACAGGGTGCTTCACAGTCTAGACAACAGAAGACAA---GGTGGTTGCTGCAGAGA-CCTGCCCTCAGTGTCCTAGAAGCTTC------ACATGATTGGAGGGGGATT-----------GGTGTTCCAGCAAAGATATGCAGGGAGA a score=8538.000000 s hg15.chr4_random 628166 62 + 1219494 ATATTCAACAAAATTAGTTTT----ACTGACTATAAACAACAAGGGCAATTCAGAG----GAAACGTGCA------ s mm3.chr5 116835682 75 - 149719773 ATATTTAAC-AGTTTAGACTTATGAACTTGCTACAACAAGCAAGGGCAAGTCAGAGCTTTAAAACCTACGAAGAAA s rn2.chr14 78615148 75 + 107821284 ATATATAAC-AATTTAGACTTATTAACTTGCTACAACCAGCAAGGGCAAGTCAGAGCTTTAAAACCTACAAAGAAA a score=40909.000000 s hg15.chr4_random 628228 247 + 1219494 GTGCCTTTCACTCAGCAGCTTTAGACCTTGAGATGCTACCAGGGCA-GCCACTCACCGCAGCCCCTGCTGGGGTGTGAATGTGCACGACGCACTTCACGTCCGGGCGTGCAGCATAAATTGCAGAGTGTAAGGTGAAGCCGGCCTGATTCACTCCCAGATTAGTGCTTCCACGATCTACTATATCTCCTTGTAGATTGATCTTAACCTGAAAATAAAAAAATAAAAATGTAAAATACCAAGAGGACTT s mm3.chr5 116835910 246 - 149719773 aAGCAAATAAGCAAACATAATGGGACCTACAGA-GCTCCCGGCATGGCATACTCACCGCTGCCCCCGCTGGGGTGTGGATGTGCACAATACACTTGGCATCTGGTCGCGCAGCATACACTGCCGAGTGCAGAGTGAAGCCCGCCTGATTCACCCCTAGGTTAGTACTTCCACGGTCTACTATATCTCCTTGTAGATTGACCTTAACCTGCAAATAAAGACGCAAACCTTTAAAT-ACCAAGAAGACCT s rn2.chr14 78615368 241 + 107821284 aaacaaaTAAATGAGCAAAGCCAGACCTAGGAA-GCTCCCAGGGTG-CACACTCACCGCAGCCCCTGCTGGTGTGTGAATGTGCACAATGCACTTGGCATCTGGTCGTGCAGCATAAATGGCCGAGTGCAAGGTGAAGCCGGCCTGGTTGACTCCCAGGTTAGTACTTCCGCGGTCTACTATGTCTCCTTGTAGATTGACCTTAACCTGCAGATAAAGAAGCAAACCTTTAAAC-----AGCAGACTT a score=2239.000000 s hg15.chr4_random 628705 57 + 1219494 CCAAGAGGACTTCAAATTACCCTAACTAGAAACTATTCAAACTCAAGATTACAATAT s mm3.chr5 116836156 43 - 149719773 CCAGG------------TACCCTTACTAGAAAAC-CTGAAAGCAAAGAATA-AGTGT s rn2.chr14 78615609 41 + 107821284 CAAGG------------TACCCTTACTAGAAAACACTGAAAGC-AAGAGT---GTGT a score=57884.000000 s hg15.chr4_random 628762 608 + 1219494 TTGTAACTTCTCTCAAAGGTTTTTCTCTAACTGAACACACCA-CATAAAACATAGGCTCTTTCTTGTTTC-TTGGGTTTTACATATTTAGCTG-ATCTGAAGATGTTGAATGACCTAACATGACCTGCACATACAAGCTGCCAAAGAGAAGGACATTCTTACCAAACTGGATGCAGTCACTTCACTGTAAAGAAGCCCAAAAGGGACAATGAGGAAGTGTTCCTGCTCGGAGTTCACTCTGGTCTGTGGGGAAAATGACTGAATTAGCTCAAAGATCC---------------AAGTGAAATTATTTGCATCTCTTTCAGGCTACAAATTCACGGGTTTGTTCAGAACACTGAGTGAGCTATGCAGGGAAGCGTCCATG-CACAATGCCTGTCACGAAGCCAAGGGGTACTGGAAGCTTTCCATTATTCTACTGTAC-------TAATTTATCACATATATGAAGTGCTTCTTGCTCACGT--------TCATGATA-----ACTGACTTTATAGAGGGAAAAAACAGTTCCACACTAGCCTTCTGACAGGTCAATAAATTACTGCTGGGTTACTCTGTCACACTTTCTGGTGGCTACTAGTGTCAAAGGCAAAAAGGTGTCACTCCTCAGGGATATAATAATGAAA s mm3.chr5 116836199 522 - 149719773 CTATAACTTCTTTTAAAGGTTCCTCCTAAACTAACCATACTTGTATA-----------------TGTTCAGTAGGGCTCTGC------AACTAGATGTGAGGACACTTAAAGATCTAATAGAAT------AAACTTGACGCCAAAGAAAAGGGTACTCTCACCAAGCTGGATGCAGTCACTTCACTGTAGAGAAGTCCAAAAGGTACGATGAGGAAGTGTTCCTGCTCAGAGTTCACTCTGGTCTAC-GGGAAAATGCCTGAGTCAGCACAGAAGTGATTTTTTTTTTTACAGAGGTAAAACTACCTGTGTCACTTACAGGACACAAAGTCACAGG--------------TGAATGA-CTAGGTAGGAA-----CTAAAGCATACAGTCTATCACAAAGCTAGGGCGATCTGAACACT-----------TACTGTACAGAAATTTAACTTACCATATACATA---------CTGGTCACAA---------------------GCCAA------------ACAACCCAGTTCAATACTCAACCACTGCCGGGCC--------ATTGTGAGGTTATTCT-------------GAGGCCGCCGGTCT-AATGGCAAAACGATGCCAAACCTCAGAAGTAGGATAATGAAA s rn2.chr14 78615772 537 + 107821284 cTATAACTTCTCTTAAAGCTTCCTCCTACACTAACCACACTC-TGTA-----------------TGTTCAGTTAGGCTCTGC------AGCTC-CCGTGAGGGCACTCACAGACCTAACAGGATTGCTATAAACATGATGCCAAAGAGAAGGGTGTCCTCACCAGGCTGGACGCAGTCACTTCACTGTAGAGAAGTCCGAAAGGCACGATGAGGAAGTGCTCCTGCTCAGAGTTCACTCTGGTCTAC-GGGAAAACGCCTGAGTCAGCACAGAAGCCA-------TTTTACAGAGGTAAAGTCACCCGTGTCCCTTACAGGGCACAAACTCACAGG--------------TGAATGA-CAAGGCA-GAA-----CTAAA-CATACAGCCCACCACAAAGCTAGGATGATCCAAACACT-----------GACTGCAGAGCAATTTAACTTACCA-GTGCATG---------CTGCTCACAAAACCGACTTTATAGCAAACAGACCAA------------ACAACCCAGTTCAATATTCAACCTCTGATGGGTC--------ACTAGAGGGTTATTCT-------------GAGGCCGCCGGTCT-AATGGCAAAATGGTGCCAAACCTCAGAAATGGAAGAATGAAA a score=791.000000 s hg15.chr4_random 629687 59 + 1219494 AAAACTTACTTTTAAAAAGTCAAACAGAATGTCCTTTTTTTTTTTCCTTGCTGCAGTAG s mm3.chr5 116836721 43 - 149719773 CAAACATCttttt----------------tttttttttttttttttttGGTTTTTCAAG s rn2.chr14 78616309 35 + 107821284 CAAATGTC------------------------TTCTCTTTTTTTTTTAAGTTTCTCAAg a score=9124.000000 s hg15.chr4_random 630468 183 + 1219494 ATCCATTTCTTAAGTCTCTACAACACCACATCCTCATTGCCTTC--ATTGGTTTGCCTCTTCCACAGTATG----------------------------------------------------------------------------------------------------------------------------------TTTTTCTCCCACAGTAATTAATTCAATGCAGATTTGGTTTACactatgcatcaagcatatgct-agacactaggaatacagcagtaaaaaagaagagacctgccct---caaaaatat s mm3.chr5 116837024 214 - 149719773 ATACAGTTCTGAAAGTCC--CGATACCAAAATATCATAACCTTCTGGTTTCTCTGCATCATTCACAGTGTATGTATG--------------------------------------------------------------------------------------------------TAtctctctctctctctctctctctctctttctctctctcCAACTCATTCAGCACAGAAAGG-----AACAATATACCCAGCGTATATCAAAACAGCAGGAATATGGCAGTAAAAAAGAAGAGATCTTCCCCAGTTAAAAAAAT s rn2.chr14 78616627 299 + 107821284 ATGTAGTCTTGAAAGTCC--CAATACGAAGATAGCATCACCCTTTGGTTTCTCTGCATCTTCCACtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtatgtgtgtgtgtgcatgcgcacgtgtgtgtctgtCTATCTGTCTGTCGGTCTGTCTCTGTCTTACCCCCCACAATTCATTCAGCGCAGAAAGG-----CACAATATACCCAG-GAATTCCAAAACAGCAGGGATACAGCAGTTAAAAAGAAGAGATCTTCCCC------------ a score=3686.000000 s hg15.chr4_random 634966 32 + 1219494 ATTAATAATGTTTCCTTCTTTTACTTATTTTA s mm3.chr5 116837658 32 - 149719773 ATTGATTTTTTTCCATTTTTATTCTTTTTTTC s rn2.chr14 78617336 32 + 107821284 ATTGATTTTTTTTCCATTCTGTTCTTTTTCtc a score=153788.000000 s hg15.chr4_random 634998 1954 + 1219494 AGATTTATTTCCAACTGTAAGCTTAACTAACAGATCTATTAATACATACTTTAATTTTAGAGGCTTAAAACATTCAATTCTCTGAATCTAAAGCAAAAAGGAGAAAGTGCAAAATTACAAACATCAAGTAAAAATAGAGAAGGATATTTTGAAGTCAGTTTCCTCTGCAGTTGTCCCTCCCCGTCAGACCAGCCCTGCTCTCCCTGTGTCTCTTCCCACACATGTACTGCCCCTTCTCTGTGTATGAAGAATGAGACTCTCCTGTTGCAGACCAATGC-AGTACCCAA------TTCAGTAC-------------------------CTCCAGAGGAGACCACTATCACGTCCCTGAAGCACAGGGCACTGGTCACAAAGGTGGGTCCAGACCATCACCTCAGAGGCTTAGCATTCTCTGGAATCCAGAATGGAGTTGA-ACAAGCACCTGCCAGGTTCTGCAGGTGCAAAGCCTTGACAGCATTCCACTGACATCAGAATGGGCAGGCCAAGCCATCAGCTAAGTGCCACCGAGAGAGGAAGCCCAGTCCACTGTGCTAACTGGGCCACCCCGTCTTGTCC---CCCTCCCCCCAGCCCCCACAAACACTTCTCCAAATCCAATGCAATCTTAAAGATCTATTTCAGAC---AATCATCTCCAATCTTCTAACACCTGTTAGCAATTTTAAATCCCTTTAGCAGAAAATCCCTATGACCCCCTTTCAAAGAAAGGGCAGAATGACCTGCTGTCACTTTTTGTTGACACTG----------TATTTGCTTTTC-TGTTAAGCGTCTATAC---CATACCTAGATAGTA-----------AAT-----AAGAAATGGATGCCATAA-------TAGTAAAAC--AAAATAAACCAAAA----------------------------CCTTTCTTCCTTAAAGATTCTCTAGTTCTAGTTTATAAGACATAG--GAAACATTTTAGGTAACTTGCATTTCTTTTTACTCGGTATTAAGCCCCAAGGAGATAATTTACAGA---------AAACACTT--------TTTTAATTTTGCCAATTCTTAAACAATTAAAGGAGGAGAAAACAAGCAATTTAACCAATTCAAACTTATTTAATCAGCATTCAAAATAGGACTAG--GCAAACAGCACTTT-AAAACCTGCGAAGAAGGTGAAGCTGTTATCACAGTTAGGGTTACGT-----TTCCAATCACAGCTGTAACATTTTCACCGCACTGATCTTCAGGCAACCACTTAGCACT-AATCTCCACCACAGCATTCTGTCAAGTATAATTAGATGACAGAGGCCAGCAATTTCCCTGCAGGCACCAGGAAGGGAGCTGGCATTTGTGCTAGGCTAACTGGAC---CCACCAATCAAATGTCAAAAGGTCCCAGCGAGCTCTTGTTCACAATTTCACTGAGGTAATTTCAGTTCAGCCGGGGGT-ttcatt------cagtttttcacctaagtttactgcatgcctactctttgccacgggtcctggggccacagcagggaccacaacagacgctctccctgtggaatttatattcctgtgggcagagagggacagcaacagctaaacatacaga---atgaatgggg----gtaactgctacagggga----------------ataaagcagCGATGACATTCTACACAGAGTGACCGTGCCGCACACAGGAGCATGACATGGTAAGGCTTACATTTTGAAAAGTTCATTTAAGCGGAAACAAGAACAGATGGATAGAAGGCAACTCAGTCTCTCTGGCAGAGACCAATATCAAGTCCCAGAGGCACAACACACTAATCACAAGGTGAGCTCCAGACCGTCACCTCAAGAGGCTTAGCATTCCTCTGAGTCCAGAATGGAGCTTAACGAAGCACCGCTGGTTATGAGTCCATGTGCAG-AAAAACCCATGTGTGTGTGAGTATGGAGGAAACATTTCAGCAACGTGAACAGCGCACACACTGCTTGCCTCAAGAGAGATGGAAGTATTGGTGGAATTAC----TTTTTCTTTAGAC---------ATCTGCATAAGGTACACTTGATACAAAAAGCAGGCACTGTATTAACAATTTAAAATATCC s mm3.chr5 116837768 1812 - 149719773 aTATACAATTCTAATTGTAAGCGTAAC--------ATGTT--TACATGTTTTAACAGAAAACACTTAAAATATCCAA----CTTAGTCTAAAGCAAAAGGTATTACACACAGAATT-CAGACATTAAATGAA-----AGAAGG--ATTTCAGAGCAGATTTCTTCAGTGGTGGTCTCT----GTCAG---TGCCCTTGTCTACCA------------------------CCCCTCCTCTGTA-ATGAGGTTGGACAGCCTCAGACCCTCAGCCACTCCTAAAACCCAAGCCCACCCCAGCACTCAGGAGGAAGGGGTGGGCTGCCTGCTACAGAGATGGATACTAT---ATCCCCCACATCCAATGCACTGG--------------CCAGACTATCACCTCAG-GGCTTAGCATTCCATGGAATCTAGACTGGAGCTGAGCCAATCCCCTGTGACGTTGTACAGGTGCTGAGACTTAACA---------------CGGGACAGAAAGGCCTGTGCACCAGCTAAGAATCACCAGGAGAGGATCCTCAGGCCAACATCCCAGCTGGGCCA-CCTGGCTTGTCCTTTCCCTTCTCCGAG-----------GCTTCTCTAAATCTGATGCCACTTTAAAGATCTAAGTCCATG---TATCCTCTCCAAGCCTCTAACACCTGTCAGCACTATAAAAT-CCCTGAGCAGAAAATCCC--TGACCCTCTTCCCGAGTAAGGACAAAAGGACTCTCAG-CACTTGTTTTTG-CACTGATTCTGTTAATATTT-CTTTCC-TGTTAAGTATCTACATAATAATATCTGGATGGTGTGATGGTATCTAAT----------ATAGATGTCATAAATCTTAACAACAAAACC-AAAATACTCTAAAAATACTTTAAAAAGCCAAAAGGGAAGGATGGATTCTTCTTCAAAGACTCCCTGATTTCAGTTCATAAAAT------AAGATCTTTTTGGTAACTTGAA--TTTTTAAACTCTGTATTAATAACCAAGCAAATCACTTATAGGCAGAACAGTAAACATTTAACTGGCATTTTAATTCTGTCAATGCCAAACAAATCACA--GGGAGAGGTTTATAAGCTT----AAGTCAAAGTTACTAAAATAGTATTCACAACAGGGTGAGTTATACACAGCATCTTAAAAACACACAAATCAGCT---ACAGTTAGCACCG--GGCGCCACAT-----TTCCTATCACAGCT-TACCATCTGCCTAG---------------AATCAGTCAGCATCAAATCTCCATCTGAGCTTTCTGTCCAGTCCAGTTAGCTGG-AAAGGCCAGCACACAGTCAG-------------------TGGAAAATGACCAAAACTAACTGGACCTACTACTGTTCAGCTACCAAAGGTTTCTACTGAGTTCTTTTTCACAATTCTCCTAAAGTAATTTCGGTTCAGCCAGGGCTGGTCACCATTGAATAGTTCAGGGCATAA-CTAACACAGCGCC-AGACACTGCTCCTGGTCCCAGGCCCACAAGAGGGAGTACCAAGCA-GCTCTGCTTATAGAGCTGGTACTCCTGTG--------------ACAACTATGCCATCGACTGA---ACAGATGGGT----GCCACTGCTACCTGGAA----------------ACACA----AGACTGCATTCTA-ACAG---------------CAATGGAGT-------------------------------------------------GAGCAGACAGAGAGGAGGCAACCTGGCAACT---GCAGTA----------------AGGATTACGCCACACTGCTAAC-AGGAAAGCACTAGACCACAACTTC---AGATTTCACATTCCTCTGGGCCCAGGAGGGAGCTGAACTAAGCACTCC---TTACAAGTTCACACGTGG-AAACCTCCACACGAGT----ATATGAAGAAAAGGCTTAAGCAGTCTAAGCACTGATAACATTTGCTACCC--AAAAAAATAGCAGTACTGGCATGATTATGAA-TTTTTCTTTAGACCTCTGTAACACCTACAGAAGGTATACTCATTGCAATAAGCAGCTATTATGATGATAATTTTAAAAATTC s rn2.chr14 78617444 1747 + 107821284 ATATACAATTCTAATTGTAAGCTTAAC--------ATATT------TGTTTTAATAGAAAACACGTAAAATATCCAAT--TCTTAGTCTAAAGCAAAAGGTATTACACCCAG--------------------------------------AGAGCAGATGTATCCAGCGGTGGTCCCT----GTCA-----GCCCTTGCCTTCCA-------------------------CCCTCCTCTGTA-GTGAGGACTGACA--CTCAAACCCTCAGCCGCTCCTCAAACCCAAGTGCACCCCAGCGCTCAGGAGGAAGGGGTGGGCTGACTGCTTCA----------------------CCACAGCCCACGCACTGG--------------CCAGCCCATCGCCTCAG-AGCTTAGCATTCCCTGGAGTCT--TCCGGAGCTGAGACAACCACCTGTGAC---GTACAGGCGCTATGAGTTACCA---------------TGGGACAGAAAGGCCTGAGCACCAGCTAAGAAGCACCAAGAAGGGATCCTCAGCTCAGTACCCC-GCTGGG-CA-CCTGGCTTGTCCTCTCCCTTCTCCGAG-----------GCTTCTCTAAATCTGATACAACTTTAAAGACCTAAGTCGATGATCTCGCCTCTCCAAGCCTCTAACACCTGTCAGCACTATAAAATCCCCTTAGCAGAAAATCCC--TGACCCTCTTCCAGAGAAAGGACACAGTGACTCTTAG-CACTTGTTTTTG-CACCGATACTGTTAATATCT-CTTTCCTTGTTAAGTATCCACACAATAATATCCAAATGATATGATAGTATCTAATGATAAAGGAAATAGATGTCATAAATCTTAGCAACAAAATCAAAAATGCTCTAGAA----TTTAAAAAGCCAAAAGGAGAGGATGCTTTCTTCTTCAAAGACTCCCTGATCTTAGTTCATAAAATAAAATAAAAATCTTTTTGGCAACTTGAA-TTTTTTTAACTCTGTATTAATAACCACACAGATCACTTACAGGCAGAACAGTAAACGTTTAACTTGCATTTTAATTCTGTCAATGCCAAACAAATTACA-GGGGAGAGGCCTATAAATTT----AAGTCGAAGTCACTAAAATAGCATTCACAA-AGGGTGAGTTATACACAGCGTCTT--AAACACACACATAAGCT---ACTGTTAGAGCCA--GGGACCACATCACCATTCCCAT-ACAGCTATAACATCTGCCTAG---------------AATCAATTAGCATTGAATCTCCATCTGAGCGTGCTGTCCAGTCCAGTTAGCTGG-AAAGGCCAGCAGATGGTCAG-------------------TGACAAATGAACTAAGCTAACTAGAC---CTGCTGCTCACCTATTAAAGGTTTCTACTCAGTTCTTTTTTACAATTTTCCTAAAGTAACTTCAGTTCAGCCAGGGCTGGTCACC------------------------TACACAGTGCC-AGACACTGCTCCTGGTTCCAGGCCCACAAGAGGGAGCACAAAGCA------------------GATACTCCTGTG--------------ACAACTGTTCCATAAGATGGTGCACAGACGGGTATCAGTCACTGCGGCAGGAAACAGCAGGGTTAACTCTACAC-----AGACTGCATTTTA-ACAG---------------TAATGCAGT-------------------------------------------------GAGCAGACAGAAAGGAGGCAACCTG---------GCAGTG----------------AGGATTTCACCATACAGCTAACGACGAAAGCATTAGACTGCAACTTC---AGGTTTCACATTCCTCTGAG-CCAGAGGGGAGCT-AACTAAGAGCTCC---TTATAAGCTCACACATGGAAAACCTCCACACATGT----ATACGAAGAAGAGGCTTACACAGTCTGAGCAGCTGCGATATTCGCTACCTCAAGACAAATAGCAGTATTAGCATGATTATGAGTTTTTTCCTTAGACCTCTCTAATACCTACAGAAGGTATACTTGTTATAATAAGCAGGTATTATAATGATAATTTTAAAAATTC a score=8065.000000 s hg15.chr4_random 636969 64 + 1219494 GAAAAAAACAGAAGACTGGAACAAGTTTCAAAACCAAAGGAAGGAAGCAGTTCAAAGGAA------------------GAAG s mm3.chr5 116840071 62 - 149719773 GGAACCAACAAGAAATTAAAACAAGCTTTAAAGTCAAAGGAAAG--GAAATTCAGAGAAA------------------AAGG s rn2.chr14 78619777 79 + 107821284 GGAACCAACAAGAAATTGAAACAAGCTTTAAAGCCAAATGAAA---GAAGTTCAAAGAAAAACTGTCTCCAGAAGAAGAAAG a score=3845.000000 s hg15.chr4_random 637734 54 + 1219494 GAAGCTGGGAGGGA------------------GAGTACAGGATTGGCAGAGTATTGCTGAAATGAGGGACTA s mm3.chr5 116840115 54 - 149719773 GAAATTCAGAGAAA------------------AAGGAAAGAGAAAGCAAGTTGTCAGTGCCTTAAGAGCCTA s rn2.chr14 78619820 72 + 107821284 GAAGTTCAAAGAAAAACTGTCTCCAGAAGAAGAAAGAAAGAGAAAGCAAGCTGTCAGCGCCTTAAGAGCCTA a score=2510.000000 s hg15.chr4_random 637791 115 + 1219494 AATACAAGATGGACAAAATAGGGAGTGAAGAATAGGCTAATGGATTGGGATGAAGAAGTGACTGTCCACAAGGGAAGGACTCATGTTGTCCACTGACACAACCACAGTTAGAACA s mm3.chr5 116840328 105 - 149719773 aaaacaaaaaaaaaaaaacaaaaaacaaaaaaaaga--aaaagaaaaagaaaaagaaa-----GTCCACC---GCAGGGCTCACGCTGTTCCCTCACACAACCTGAGCTGGAACA a score=10817.000000 s hg15.chr4_random 638032 79 + 1219494 AGAAAGAAAACATCATCATTCTTAGGTTTTTAAGCATAAAAATAATTTTAGAAACTGCATATAATCTGG-TAAACACTTA s mm3.chr5 116840440 80 - 149719773 AGGTAGAAAATGTTGTTATTCTTAGATCTGTAAGTCATAAATGAATTTAAGGAATGGCTTATAATTTGGAAAAACACTCA s rn2.chr14 78620583 78 + 107821284 AGG-AGAAAGCATTGTTATTCTTAGATTCCTAAGTCAGAAATGAACTTTAGGAATGGCTTAAAATTTGG-TAAACACTCG a score=45003.000000 s hg15.chr4_random 638338 187 + 1219494 AATACTCACTGTGATATGATTGTAGATAAGCTGAGACCACCCAAAGAGATCTGCTAGTCTATAAAACGCTGCCAATTTACACCGTAATAACTTCTCTCCTTTGTCATACGCAATAGAATCAGATCCTCTAAGATCGTTCACAGGAGTCACCATACCAAGACCTGAAATAAAGAAAAACAAAACTCAg s mm3.chr5 116840616 187 - 149719773 AGTACTCACTGTGATATGATTGTAGATAAGCTGGGACCAGCCAAAGAGATCTGCCAGTCTGTAAAATGCTGCCAGTTTACACCGCAGTAACTTCTCCCCTTTGTCATATGCGATAGAATCCGACCCTCTAAGGTCATTCACAGGAGTGACCATACCAAGACCTAAAATAAAGAAAAACACAGGTCAA s rn2.chr14 78620860 187 + 107821284 AGTACTCACTGTGATGTGATTGTAGATAAGCTGAGACCAGCCAAAGAGGTCTGCTAGTCTGTAAAATGCTGCCAGCTTACATCGCAGTAACTTCTCCCCCTTGTCATATGCAATAGAATCAGATCCTCTAAGGTCATTCACAGGAGTAACCATACCAAGACCTAAAACAAAGAAAAACAAAACTCAA a score=18547.000000 s hg15.chr4_random 638658 226 + 1219494 TTACCAAAAAGCCTCA--AATATTAACATTT-----CTTATCAAA-----------------------TGTAAATCAAATACTAATGGTTCTGAGATATTTATCTTCCACATTAGACAATAAAGTCTTGAAAACTTCAAAGACAATTTCATAATGACTGTTTTCCAATACTTACACAATTAAGttagaaatcaataacaaaaagatagccaaatttgtggcgtgcagtaaagca-agcttaaaaggaaatttacagc s mm3.chr5 116840805 221 - 149719773 TTTTTTATACATTTTATTGGTACTAAAATTT---TATTTGTTGAC-----------------------TATAAATCAATTACC-ACAGTCC-----TATTTTTTGTCCATATTAAACCATAAAATTTCAGAAATTTCAATGACAGAAAGACAATGTTCTCTCTGGCATGAATATATAGC----TCAAGAATAGATAACAAAACTGTAGTGTAATTTGTGAGATGCAGTAAAAAATAGATTAGAAGCATATGTACAGC s rn2.chr14 78621049 231 + 107821284 TTTTTTATACTTTTTATTGGTATTTTATTTTTTGTATTTGTCAACTGTGTTTATATTTGTATTTTTTGTATTTGTCAATTACC-ACAGTCC-----TATTTATTGTCCATATTAGACCACAAAATTTCAGAAATTTCAATGACAGAAAGACAATAAT----------------TATAGT----TCAAAAATAGGTAACAAAAATGTAGTGAAATTTGTGAGATGCAGTAAAGAACGGGTTAAAAGAAAATGTTCAAC a score=89445.000000 s hg15.chr4_random 640841 604 + 1219494 CTCAACTCTGTTATGTTATACAGT-------TAAATGCCCACTTATTTCACATGAGCAATCTTCAGGAAATTTTACCT-GAAAACTACAGAACATATATTAAAAATCAGGAACTACTCACTCATGTTTAAGGCAGCCATCCCTCCTTGCGGAGCTGCTGGGTAGACATTTGGTACATTCGTGGTCATAAAATCTGCAATCTGCTGTAATGCCAATAGGCCTGTGGGGTTCTTCCCCTTCTTAAATTGCTCCTGTATCATTGATTCCAATTCTTCACAGAAAGCCTAATAAAAAATATTAAAACACTGAGATACCATTTATT----------TTCTGTTCCTTGGGCAGGGGGTCAGAAGTAGCTATCACATAGACCAATTTTTGTTTTCatccagtgctggaaaggcaaacggatattctcacacattactgctgagaatataaactggtacattcttttctagaaagtaatttaatacaataaaagcttaaaactctgaacaggaattctactcttaggaatctattttaaggaaacattcaaggaa-gtgctcaaagactgattcatttgtatgttcattccagtattattgataaaagggaaaaacatcctacgtttcaa s mm3.chr5 116841637 600 - 149719773 CTCAATTCTG-TATACTGTCCAGTGCATATGCACATACTCACGCGGCTCACATGAGAACCCTTCAG--AGCCTTATCTGGAAGGTTACAGACCACAGAC--AAAGCCAAGAACTACTCACTCATGTTCAGGGCGGCCATTCCTCCTTGAGGAGCTGCCGGGTAGACATTTGGTACACTCGCAGTCATGAAATCTGCAATCTGCTGCAATGCCAGCAGGCCTGTGGGGTTCTTGCCCTTCTTAAACTGTTCCTGTATCATAGACTCCAGCTCTTCACAGAAGGCCT-ACAACACATATTAAGATG-TCACACACTATCTACTGGGAGTGCTATTATTTTATTAGAGCAAGTGT------GGAACCAACAGATAAA----TATCTGTTTTCATCTAGTGCTGGAGCAGCAAACAGTGGCCTGGCCTTCTCACTTCTGAGAATATGAACTGATATATTCCTTTTTAT-AAGTAATTTAACAAAATAAAAGCTTAAAACTTAGAACAGG-ATTCCACTAATGGAAATCTATTTTAAGGAAATAT--AAGGAATGCATTTAAGGACTTATTCATAAGGTAATTAATCTCAGCATCACAGATTT--TTAAAAAGGAGGCCACATTTCAG s rn2.chr14 78621834 594 + 107821284 TTTGATTCTG-TATATCGTCCAGTGCATCT-CACACACTCATGTGGCTCACGTAAGAAAGCTTAGG--AACTTCACCTGGAAAGTTACAGACCACAGAC--AAAGCCAAGAACTACTCACTCATGTTCAGGGCGGCCATTCCTCCTTGTGGAGCTGCCGGGTAGACATTGGGCACACTCGCCGTCATGAAATCCGCAATCTGCTGTAATGCCAACAGGCCTGTAGGGTTCTTCCCCTTCTTAAACTGCTCCTGTATCATAGACTCCAGCTCTTCACAGAAGGCCT-ACGAGGCAAATCAAAATG-TCACATGCTTTC-ACTGGGAGTGTTATTATTTTATTACAGTGAGTGT------GGAACTATCAGATAAA--------TGTTTTCATCCCGTGCTAGAGCAGCAAACAGTGGTCGGAACATTTCACTTCTGAGAATATGAACTGATATATTCCTTTTTAT-AGGTAATTTAACAAAACAGAAGCTTAAAATGTAGAACAGG-ATCCATCTAATGGAAATCCATTTTAAGGAAATAT--AAGGAATGCATTTAAAGAC--ATTCATAAGATAATTAATCTCAGTATCACAGATTTAAAAAAAAAAGAGTCCACATTTCAG a score=6967.000000 s hg15.chr4_random 641445 184 + 1219494 tcaacagaggactgatcaaataCACTGGGAATTCTACGCATGCATTCAACATGAAAAGCTAAAAAAACTTAAATGGCATAAAATTGCTCTTGATATATGTTTGAGTGACAATGTTATCAAGCAGTATAACCAGTCCTTATTACAGCAAatacatacctaaacatagaaaaagattaaaagtaaa s mm3.chr5 116842237 172 - 149719773 AAATTAAAAAGCTGATTCAACATGCTGGCAATTCCACAGATGCATTTAACAGGAAAAGCTTAAAA---TCAAATGGCATAAAACTGTTCTTGATATGTTTTTGAGTAAAA--------AGGCAATGTAGTCAGtttttataagaaaaaattaaaatataaac-tataaaaagattataaGTATA a score=4552.000000 s hg15.chr4_random 642081 94 + 1219494 CCATCCTTTATCAAATAATACTAAATCAGGCAAAAAAAAGTGCAATTGGATTGATGGTGATTTTAATAGAAAATCACTATTATAACAATACAGA s mm3.chr5 116842765 91 - 149719773 CCATCTTTTATTAAATAATCCTAAATTAGGCAAAAACA--TTCAG-TAGATTGATAATAATTTTAACATGAAGTTATTATTTTAATAAGACAGA a score=1345.000000 s hg15.chr4_random 642175 63 + 1219494 TAATTTATATTCC--CAACCTGCACTAAAATAATTTTTTCACATACCCTGCAAAGAAATAAATAT s mm3.chr5 116843036 58 - 149719773 TATTTTATCTTCCCTCAAACTGCTATAA------CTGATCACACAGCTTA-AAAGAAATAAATCT a score=5418.000000 s hg15.chr4_random 642563 435 + 1219494 TCTTGTCAAACAATTATAAATGATATCCGGTATGAAAATTTAAGTTCACTGGAT------------------------GTTAATCCACATCAAATTTACTTCTAGTTTGTCACTGCTTGAGCTGAAAACATATTGCAGGAGATTGCCAAGGGACAGTCTAAGAGTACCTATCACTTGGGGGAAGCACACAACAGACAGATGTATTGCTGTTAATTAAGGGTAGAATAGAATGTCTGTCAAGAGCCCTCTGAGGACCCCCTATTTACCAAACCATGGCAAATAATGTTGCAGATCATATTTTGTAGTCA-TCCGTGAGGAAGGGAAAAGCTGAGAGGTACTCTGACTGCAAGCAAGAAATAAACAAAGGAAAAAAACAAAACATGGTGATTATTTAGCCATCTTTGTCATCAAAGCACAATGCAATGAGAGAGAAAGGGAGATATGTGCAAATAAAGATA-g s mm3.chr5 116843094 388 - 149719773 TTTTTCCAAATAATTATAAATGATACCTCAGATGAAAACATGAATTCAGTGGATGATCCATCTAACTGTAAGTATTCAGTGATTCCACATTAAACTTAAATGTAGTTT-TCATGGCTTAACATGAAAACATACTGAAAGACTATGTCAAAGAGCTCTCT-AGAACACCTATCTCTC---AGACGTGTGAGACAG-CAAATGTATGACTGCTAGTCA---------------TTTGGCTAAGAGCCTTCTGCAAAGCCAAGGTCCACCTCTTCATGAAAAGT-------CAGTGTCCATCGCTCTGTCAGTCAGTGAAGGAGGGAAAA--CGAGGA----------TGAAAGCAGTAACTCGGCAAAG---CACAGCTAAGGAT-------------CTGTCCTTGTCATCAATGCGTAATGC-ATGGG----------------GTACATATAAAAACACT a score=5691.000000 s hg15.chr4_random 643382 800 + 1219494 GAGAGAGAGTAAGAGATACAGATGGCATCTCCTGAACATCACAGACAGTGCTGGTCAC---------------------------------AGG---------GAAAGCAAA-----------------AGCTAAA------------------------TTAAACAAGCTCCTTGCCTTCAGGAGCCCTCAGTCTGAAAATTCAAAGGATCTATTTCAATGGTTTTCAAATCCACATACAGATCTAGGGAAAGCTCAATTCGACACACActactaagtaccaggcgctgttttagacactaaggatatacatactgataaataatatggtccttgccatccagaaacttaaagcttggtaaggaagacaCAAAAAGAAGAAAACCACAGTACAGGAGCCCTATGCATAAAGAGCATTTCAGACGACCTGTAAGTGCAGAAAGGACACGTGGCACAGAGCTGAGCTTAGTCCTGAGTGAGGGCCTGGAGCCACCAATCTGGAT-CTTAACGTTTGGCTCCAGCCAGCTGTCACTAGCCTAAGGACCTTGTGTGTGctactttgatcataactcttgctggttcaacatccataccctcagtttgggaccctcatacctctcagctttcggacctcctctcctccaaagaccctgtcatccaacccatctcaggctcccacgtccatggtca-gcactacacctgctcattcctagtaaccatgtctctcttcaatcccaaagccaagtatgtgccctgcaaccaccccctcctagcatccagctcacactttcttccatccattcatcaccctaacaccttc--tcaccttggctcacctcccctgt--tctgaactccctcact-ggcttagatccattgtaatgatta s mm3.chr5 116843483 696 - 149719773 CACAAAGACTCA---ATA-AGCTGCCCTCCACTGAACATCACAG--GGTACTGGTCACCACGGCTGCAAGCTCAAACCCAGCTTGGGCTAAAGGAACTACTTTAAaaacaaacaaacaaacaaacaaacaGCTGAACACAGTAACATGCTTATGTCTTAGTTTAAAAGGCTTCCTGTCCTCATGAATCCTCAATCTGAAAAGGCAAATAATCTGTTCCCATGCTTTCCAAATATACAAACATATCTATG----------------------------------------GTTTAGGACA-----------------------------------------------------------------AAGATGCAGCAAGGA-AAGAGCAGGTTATGAGGGTTTCCCACACTATCAGCATTTCAGGTAGCATTT---------GTGGATGGTTGGCACGGAGCTG-GCTTAGTGATGAGTGAGGGCCTTGAGATACCTACATGGTTACCTGGGTTTTACCTCCAGCCAGCAGTAACT-GCCCAAGG--CTCCTACGGACTGCTGTGGTAACAAACCCTGACGGTTCAGCATCTACACTCCAACCTT--------------TCTGAGCT---AGACCT-TTCTCCT---------GTGCTCTCCATTC---CTCTGCCTCTCACTTCTGCAGTCACGCTCTAGACC-------------------------------AACACAAAGCCACAAGTGGACTCTCAGA------CCTTCTAGTATCCACAGCACCCTTTGCTCTGCTCCACTGTGGTTCTAATACTCCCCACCGCTCCTCCTCACCTTCTCGGCAGCCCAGTGTCCTTCATTAAGCTTAGATCCA--GTAATCATTA a score=118.000000 s hg15.chr4_random 645620 13 + 1219494 TCTACTaaaggcc s mm3.chr5 116844239 12 - 149719773 TCTGCTAA-TGTT a score=21713.000000 s hg15.chr4_random 645633 361 + 1219494 ttgtatgtctagtttactgctaaatgcccagttc-----------cttaaacagcacataagagacaatcaacatcttttgttTTTTTTAAGAAAATCAATAAACTTCTGCCAAATGACACTCCCCTGGTATGAAGGGGCACAGTAAGAACAAATCAGAAGAAGAAGGGACA--------------------AAAAAGGATGATGCACACACAAAGGCAGCAGCAGCAACATGAGAAAACTACGCAGATACAACGACC-TGATTAAAGGTGCAATCTGGAAAACACTCAGTTGGCCATGACTGTGGCTCAAAATGCTGACTCT------------------------------------------AACTAAAGGTATCAATCA---------------------------------------------------------ATTAGCAGGTACTGTTAAGGCTGACCATAC---------------------ACCCAGGAGACTGAGCTAGGGt s mm3.chr5 116844251 458 - 149719773 TCACAAGTCTTGTTTACTGGTAAGTCCCCAGTTCAAATCTGTATGTCCTCATAGCATATGAGACAGTATCA------------TTTTTTA--AAAGTCAAT-GACACCTTCCAAA-AATAC----------TAACAGAACAAAGCAAAACCAGATCAGAAG--GAAGGAAGG--------------------GGAAA--CTGCAGCACAA--CAGGGTAACATAACCAACAGGAACAAGCTGCCAGGACAAGGCTACTGTAATTACA--TGTCATCCAGAAGACACTCGCCAGGT-ACGACTGTGGCCCTCAGTGCTGACTGTAACAGTCAGGTGCAATTTATTAGCTTAGCTGTGACCAAGAACAAGTGAAGGCCACAATGAGTGTCCATTATTCCAAATATTTAGGGTTGGAACAAGAATTATTTCAGATTTTGGAGTATTTGCACAGGCTTTATCAGTTGATCATACAAACGTCTCAAATGTTGTCAAATCCAAATGTCTTAACCAACAT s rn2.chr14 78624597 425 + 107821284 TCACAAGTCTTGCTTACTGCTCAGACCCCAGTTCAAATCCACATGTCCTCACAACATACAAGGCAATATCA------------TTTTTTA--AAAGTCAGT-GACACCTTCCAAA-AA------------------GGACAAAGCAAAACCAGATTAggag--gaaggaaggaagggagggagggagggagggGAAAGACTGCAGCACAA-------TAACATAATTAACAGGAA-AAGCTGTGAG--CAGGGCTACTTTGATTACC--TGTCATCTAGAGGACACTCGGCAGTT----------------------------------------CTATTTATTAGCTTAGCTATGATCAAGAACAAGTGAAGGCCACAGTAAGTGTCCCTTATTCAAAATATTTGGGGTTAGAGTGAATATTATTTCAGATTTTGCAGTATTTGCACAGGCTTTATCAGTTGAGCATACAAACATATCAAATGTTCTCAAATCCAAATGTTTTAACCAATAT a score=114220.000000 s hg15.chr4_random 646593 878 + 1219494 TAAG----------------CTAGGTAT------------TTTTTTAATTGTAATTTAAAA-----------------ATTGCCCCAATATATAAGGA-------------------------CCCTCTAG---AAAAGTCACAAGAGTAAAAAGGAGAAATTAACACTTCCTATCCTTTACGACACTGAAGATTTTTCATTTA-TGATGTCTGATAACATGAACTGAACTGAATTCTTTCAACAACCATATACGTATACTCAAGGCACTGATTTCCTGTGATAAGATCAATGAACTATGCCACTCATACAACAGGGCATAAGACCTGAAGTATTAGAA----AAGGA--AAGATGAC---ATCTGGTCAGAGAAAAGACTTCTCTTCTCACAGGGCTTTGCAGAATCATGGACACCCTCTTCTTTTGCTCCATCATGTTGAAGTCCTGGCGAAGGTCTGGTGCCATGTTCCTCTCCCTCAAGTACTCTGGGTTGTTCTCATCTACTCGGTCGAAGTACCTCTCCTTGTGAGGGGCTGTGGTCGGGGGTGGTGAGGTCACCACCGCAGCACGAGAATCACCATTCATTGTACAATCTTTCTAGGTTCCTACAGAATCAAAATAAAAGAAAT-TATTGTTTTCAAATCAATGTCTAACAGTGTTTCATGATGAGCACATGAGCTTGGTAAACACAATCTTCAACAGGAGGATGTAATGACCAACTGACAGTGGAAACCATGACCTGTGAGGCTTCTTTGTGGCCTCAGAGGCACATGGCTGATCAACCACCTCCCACCCTCCCACTAACCAATGCTGTGTTTTGTCCTAGCCATTGTTCCAAAGAGGAGAACAAGACAACAATCTAACAAAGCAAT----TAAGTCCTCTGACAAATCCAAAAAGAACTAAATATTAAACTTTTGACCACGTGATTCTTTACAGACATGATTTGTTCCACACAGACA s mm3.chr5 116844711 885 - 149719773 TAATGCTTAAAATATTTGTCTTGGATTTCTGAAATAGGGATGTTTGACCTGTATTTTGAAGAAAACTGTGGATTTTACATTGTTAAAATGTACAATTA-CA-----AAGAGTTTATAAAAA--CACTTTGGACCAACAGTGAAGACAGTTCAAAGTAGAAATTAATA---TCTACCCTTTATAATTATAAAA-----TCTTCTAGTTATGTCTGCTAACACAAACCAAACAGAA-TTTTTCAACAA--GTTTCTATAAACATGAA-CACTGATGTGCTGAGTGATGAGAACTGA---CTGTCTTTCAAACAACAGGCCGAAG-------AGCGCAGGAATCACAAGGA---AGCTGGCCAAACTTGTTCTGAACAAAGTTTTC----CTTACAGGACTCTGTAGAATCATAGACACCCTCTTCTTCTGCTCCATCATATTGAAGTCCTGACGAAGGTCTGGTGCCATGTTCCTCTCCCGCAAATATTCTGGGTTGTTCTCATCGACTCTGTCAAAATACCTCTCCTTGTGAGGGGCTGTGGTTGGAGGTGGTGAGGTCACCACTGCGGCCCGAGTGTCACCATTCATTGCACAATTTTCCTAGGGTCCTACAGAATGAAAATAAAAGACAT-TTTTGTGTTCAAATCAATGCCCATTCGGATTTCATTATGAGAACATCAGCCTGAGAAGTGCATGCTTCTATGTGGTGATATGCT--------------------------------GGCTCCTTCATGG-TTCAGGAGCACATGACTGGTCAATCG--TTCCCTCCCGCCACTAATCAATGCTGTATTTTGTTCTAGCCATTGTTTATTAGAGCAT------AGAACAACCTAACAATGCTATTATGTATGTCCTCTGACAAATGCAAAAGGGGTAAGAAATTTAAA-CTTGACTCTATGATAATTAACACTTAT-ATTTATCCTACATTGACA s rn2.chr14 78625024 881 + 107821284 TAAGGATTAAAATATTTGTCTTGGATTTTTGAAATA----TGTTTGACCTGTATGTTGAAGAAAACAGCAGATCTTACATTGTTGCAATGTACAGTTAACATTTACAAGTGTTTATAAAAAAACACTCTGGACAAACAGTAAAGACAGTTCAAAGTAGAAATAAATA---TCTATCCTTTATAACTCTAAAG-----TCTTCTA-TTATGCCTGCTAGCATGAAGCAAACAGAA-TCTTTTAGCT---GTTTCTATAAACATGAAGCAGTGGTGGGCTGTGTAATGAGAGCTGAG-TATGCCATTCAAACAGCAGGCCTAAGG------AGCACGGGAG-CACGAGGACGAAGCCTGCCAAATTTGTTCTAAACCAACTCTTC-----TTACGGGACTCTGCAGAATCATAGACACCCTCTTCTTCTGCTCCATCATATTGAAGTCCTGACGAAGGTCTGGTGCCATGTTCCTCTCCCGCAAATATTCTGGATTGTTCTCATCGACTCTGTCAAAGTACCTCTCCTTGTGAGGGGCTGTGGTTGGAGGTGGTGAGGTCACCACTGCGGCCCGCGTGTCACCATTCATTGCACAATGTTTCTAGGATCCTACAGAATGAAAATAAAAGACATGTTTTGTGTTCAAATCAATGCTCATTAGGATTTCATTATGAGGACATCAACCACAGAAATATGT-CTTCTATGTGGAGATATGCC--------------------------------AGCTCCTTTATGG-CTCAGAAGCACATGACTGGTCAATCA---CCCCTCCCTCCACTAATCAATGCTGTATTTTGTTCTAGTCATTGTTTATTAGAACAG---AGAAGAACAATCTAACAAAGCTATTATGTATGTCCTCTGACAAATCCAAAAGGAGTAAGAAATTTAAA-TTTGAC-ATATGATA-------------ATTTATCCTACATTGACA a score=25061.000000 s hg15.chr4_random 651554 188 + 1219494 tttatgtttttatttaatGTTTCCAAATAT-AAAAAGTCAAGACACTTACAC--------------------CAACTATCTCAAATGA---CATA-AAAGCAATTCAGTGTGTTTA-ACAATCATATTTCCCCTTCAGTTCTGCTGCTTTATACAATGGTATGATCGACAGGTAAATTGGATGGCATGTGCCTGGTTAGAAAATGTCATCTGTT s mm3.chr10 95066291 203 + 130738012 TTTCCATTTTTATTTGATGTTTCCAAACGTAAAAAAGTCAAGATTCTTACAATTCTTACAACAGTTCGAATGCAACCATCTCAGATGAGACCATGCAAAGCAACTC---TTGTACACATACCCTTTTCTCTCCTTCACCTTTGCTGCTTCATAC---GGTGTGACTGACAA-----CTGGATGGCTTGTCCTTGGTGGGAAAATGCCATTTCTT s rn2.chr7 23713800 204 + 139049774 TGTTTGTTTTTATTTGATGTTTCCAAATGTAAAAAAGTCAAGATCCTTACAATTCTTAAAACAGTTCGAATGCAGCCATCTCA--TGAGACCATGCAAAGCGATTC---GTGCACACATAACCATTTCTTCCCTTCACCTTCCCTGTTTCATA-----GTGTGACTGACAAAAGAACTGGATGGTTCGTTCTTAGTGGGAAGATGCCATTTCTT a score=50228.000000 s hg15.chr4_random 652059 391 + 1219494 TTTACAAAAAAAACAGCATGCAGCATAGTTTCTATTTTGTCT-ACAGTCAATTCACAAACTACTTACTTTG--TTTTTT-----GTTTAGGAGGCACATGGAACTGAAAATTTTAGCTGCCCAATTTTATTCAACTACCCCACAAAAAAACACAAATGACAATCCTAACACTCTTCAATCTTTGGAGGGTTGAAATAGTAGACATTATTTGTTATCTTCAGTAGATTCAACTATTTAGCCTGAAAATGTTAACTTTTTCTCTTAACAGAGATAAATCTCCTTAGGGCCTTTCCTCTAATTTTGCTAGACTAGGTTCCAGAAGCCTAGTGAAGAACCCCTCCTGTGACATTTAAAGTGTGAAAACTGTAAAGTACTCTGTTGCATTATACAAATTCTTGC s mm3.chrX 132850050 371 + 149996094 TTTGTTACAAAAACAACACTCAAGGTAGTTTCTACTTTGTCTGAAAGTCAATTTAT-AATAACTTTCTTTTCCTTTTTT-----ATTTAGGAATAATATAGA--GGAAA--TGTAGGGACTTGATTTTATTCCATTTCCCCA-AACTAGATACAAATGAC---------GCACTGCGAATGTTGGAGACTTGAGACAATCCACATCCTCTGTTGTGTTTAGTAGCTTCAGCCATTTATCCTA-GAATGTTTGCTTGT-TTTTAAAGAGAGTTAAATCTCATTAGGACTTTCCCTGTAATTTTGATATGTCAGGTTCCAGAACAATAGTGAAGAATCCATTGCATGA-ATTTAAAAAGTGAAAACT-----ATATTCTCTTGCATTGAACAGCTCTTTGC s rn2.chrX 41961120 375 + 133900917 TTTGTTACAAAAACAACACTCATGGTAGTTTCTACTTTGTCTGAAAGTCAATTTAT-AATAACTTTCTTTTCCTTTTTTCTTTTATTTAGGAGTAATATAGA--TGAAA--TGTAGGGGCCTGATTTTATTCCATTCCCCAA-AACTAGATACAAATGACA--------GCATTGC-AATGTTGGAGACTTGAGA--ATTCATATCTTCTGTTGTGTTTAGTAGCTTCAGCTATTTATTCTG-GAATGTTTGCTTGTGTTTTAAAGAGAGCTAAATCTCACTAGGGCTTTCCCTGTAATTTTGACATGTCAGGTTCCAGAACAATATTGAAGAATCCATTGCACAG-AATTAAAAAGTGCAAACT-----ATATTCTCTTACATTGCACAGCTTTTCTC a score=10210.000000 s hg15.chr4_random 652450 57 + 1219494 TAGCTGGACAGACTAAGGACAGTTGGTTTGCTAAATGGCATTGAAGAAAATCCTGAC s mm3.chr10 95066803 53 + 130738012 TATTTGCATAGACTAAAGACAGT---TT-GCTAAATGGCACTGAAAGAAATCCTGAC s rn2.chr7 23714321 54 + 139049774 TATTTGCATAGACTAAAGACAGT---TTTGCTACACGGCATTGAAGAAAATCCTGAC a score=143.000000 s hg15.chr4_random 652516 10 + 1219494 CTCTCTGTTG s mm3.chr2 66638643 10 + 181423755 CTATTTTTCA a score=12235.000000 s hg15.chr4_random 652526 99 + 1219494 CATTATACAAATTCTT-GCTA------------GCTGGACAGACTAAGGACAGTTGGTTTGCTAAATGGCATTGAAGAAAATCCTGACTGAA-CAGCACTATTTAGTCCAAAT s mm3.chr11 81404338 101 + 122862689 CATTCTGTAAATTATTTGTTA------------GGTAAATAGACCAAAGACAGTTGGTTTGCTAAACAGCACTGAAGAAAATATTGACTCAGGTGACGCAACTTAGCCCAGAT s rn2.chr10 64399216 104 + 106208427 TATTCTGTAAATTATTAACAAATAATCTAACAAGGTAAATGGACCAAAGACAGTTGGTTTGCTAAACAGCACTGAAGAAAATACTGGCCCAAGTGACATGACTT--------- a score=6934.000000 s hg15.chr4_random 653552 495 + 1219494 aaggcagacctaatccaaaatgacttatgtccttataaaacggaaaatgcggacaaagagacacgcacagggaga--actaagtgtagatgaaggcagaggtggacgcagtgcttcctcaagccaagaaacgccaaggactgccgactacc---gagctagga------tggggcccattctccctcacagcctcgggaggaaccagccctgcccacaccctgatcttagacttctagcctccagaactgtgagatgacacattactgttgtttaagcccctggtctgtggcactttgttacagcagctctaggaaactcataGAGAGGGGCTGTCAGGAAAGCTTCACTGAGATGATTTCAGAGGTAAAACGTGACTGCCAGGTGGCTTGGGGAAGGCAGCAGTCACCTGGTGAATAAACATCTACTGAGCTTTAGGGAGTAGCACAGAAAACACAGCAGAGTGAGC--GCAGTCAACCGTC-GTCTGATTTCACATGCAGTACCTGG s mm3.chr5 116848983 424 - 149719773 aaggtggccctaattcaacatgactagtgtc--tatacagcggaaact-tatacacagacacac-cacatgtagaccgccatgggaagataaaggcaaaagtcagggtgatgct-----------aaggacactagcaacttccagcaatccaagagcagaggaagatctggggtgaatattccctcacagcctgagaacccatcaaccc--catgcaccctgatccc------ccagcccccagagctgtgaggtggttcactgccgtggaccaggcccctggt-tacagtactttgttata-cacccc---ATAAGTTGTAGAGAGGGATCAACAGCAGAGGCTCACTGAGG----------------AAGTGTTTGCCA-------------------------CCTGGTGAG------------GGGCTCTAAAGAAAAG---AGATAGCACAGTA-AGGGAGCAAGCTGTCAAGCATCCAGCAGGTGCTCAATGCATTTTGTTG a score=6719.000000 s hg15.chr4_random 654047 368 + 1219494 CACCCAGCAGGTGTTCCACATATTTTTAATGACCTAATTTAACTATTCTCTCTATTCTAAACCTTTCAGCCCCCACTCATTCTCAATATCCAACTCGAATGCTTCCCGCTCTATGAAGGTTCCCCACGCCCCAAGCCTGGCACCTGGACTCCTGTGTGTCAACATACACCATTCCCACCTCTCCCATGGCCACTTTCAAACAGGACCAAATCATATGCGGATAAattatctgggtacatacttgctccatcactggtctgtgggcctgtgaaatacagggacaatacatttctaactcatgtttgtacaagggccctgggggagtgtgtcatacatagcaggggctcaAATGAGACTGTTTATTCCCG s mm3.chr5 116849515 315 - 149719773 cATAT-GAATATCCTCCACAAGATGTTCATGAATTAGATGGATTCTTCTCTCCCTCCTAAACATTCCAGGCCTCAATCAACCCCAAGAGTCATTTCAAATGTTCTGTGT------------------------AGCCTGGCTCAAGGTCTCCTGTAT---AAAGCATGTTATTCTTACTTCCCTTGTAGCAACCTTCCAACAAGGCCAGAGCCT---------------CTGTAAAAATACTTGCTGCTTAACAGGCC-------CAGGGAAGAACAGAGGAAATACATTTCTAGCTAATTTTT-TAAATGAACACTTGGAAAGCATTTCTTATACACCAAGGCCTCAATTAAGACT--TTGTTCTTG a score=8543.000000 s hg15.chr4_random 654444 775 + 1219494 AACTTCCCTGGGACAAAGGGCTCCAAGAGG-----TCTGCATCCAAAATGAAACTGCATCGTCAGGAAATACGCAGTGAAACAGAAGGTGGAGAGTTCGCTGGAAAGAGTAACAAGATTGTAAACAGACTTGGGGGCTCCGACACTGAAGACTAAATCCAGGCAGAGGGCTGGGAACAGTGCAGCC--GTCAGCACACACCC-------TGGCCAGCAC----CAAGAGACATGGACGCCCTGGCCAGAAATTCATTAC----AAACACTTGGAAACCTGCAA-----TACTGGAAG-GCTGCAGCACCAGCCAATGCAAAGGAAATCCCTGTAATCTACTGGCAGGAGGGAGCCCAACATCTGGCGCTATCTCCCAAACACAACCGTAGTTAAGCTCTAACCCCCCACTGCTTACAGTACTAGCCTAATGACACAGTTCTCCACCACCCTAAAAGAGA---------------------------------------------------------------------------ACACCCACCTTATGTTGAAGGTTCTTCTTCACAGCTTTAGGCTGACGGAGTGTGCCCTGTTTGGGACCTCAGAGCTCAGTTAAAAGCCTTTAATTACTCTGATCGGATCATTTCTATTCCTGTGTCTCCGGATGTCCTCTTGCAGAAGCAG-CTGCTCAAAAGGCCCCTTTCAAATAATCACAGCTA--CAGTTATCACTGCTCACTA-----TGTGTGTTTTAACTCATTTTTTCTGCAGATAAGGCACAAcacagttaagcagccagtaatggggttgctggagtctgaactcgggctgcctgactccagagctcctcctcctccctctaatccacattctctctgACAA s mm3.chr5 116850396 770 - 149719773 AACTTTTCTTGGA-AAAGGGATCTATGAGGACTTCTCTGCATTCAAATTACAGCTGCATCTT-----AAAACATAATCAACTGGAAGGTGGGGCCTTTGCTGGAATGGATGTCAAGATTTTAAACAATCTTGGAGGAACCAGGACTGAC-ACTA--CCCAAGCAAAGGGCTAAAATC-GTGCAACGTGGTGAGAACCCACCTAGAACCTTAGATGGCACAGCTCAGGAGACCTAGAC-----------AAATTAATGACTCTGAGAAACACAAAAACATGGAGAGGTTTGCTCAAAGAGATGCTGC--CAATCAATA-AACGGGAATCCCTATTCTCTACTGAAGTAAGCAAGCACAAATT-----GCT-TCCCCCAAACAAAAT----GATAAGCTACAATATCTCAAGATTTGTATTCCT-TTCTAGCAATGCAATTCTCCATTACACagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaAGCAGGCAGACTCACTC---ACTGGAGGTTCTTA---AAATCCTCAGGCTG---------------CTAAGAACCT--GAGTTCAAT--AAAGCTGTTTATTAATCTGATTGGATCATTTCTA--------------GGTATTCTCTTACTGATGAAAACTGCTCAAAAGAGCCTTCTAAATTAA-CACTGCTGACCACGCACCACACCCTGATAAATTTTACATGAATGAACTCGTCCTTCCCT--------GTACAA-----------------------GGTTG-----GTCTAAACTCAGGGGGTCTGGCTCCAGAATTCCT--TCCTCCCAACAATGCACACT---GCTCACGG a score=5507.000000 s hg15.chr4_random 655219 48 + 1219494 TCAGGATGTCTCAAAACAGCTCCAATTAGAAA--------CAAAAGCAAAAAGTAA s mm3.chr5 116851166 53 - 149719773 ---TCCTATTTCAAGAAAGCTCAAGTGAGAAAACAGACTCCCAAAATACAAATTAG s rn2.chr14 78629672 53 + 107821284 ---TCCTATTTCAAGAAAGCTGAAGTGAGAAAAATGACTCCAAAAATACAAATTAA a score=11065.000000 s hg15.chr4_random 655267 106 + 1219494 AACTGAACCACAGCAATTTGTCCCA------GCCTACTCAAGTGGGTCCTCTTGCTTCCTCCCTTTTATGATGAATGGTTAGTTAACGGCTTCCCAGCCTAAATCATCCACA s mm3.chr5 116851219 98 - 149719773 AAATAAA----AGCAATACATTCCAGGAACGGATTACTTGTGTAGG-CCCTATGATCCC------TTATGATAAATG---AATTAACAGCTTCCCAGCTTAAATTTTCTACA s rn2.chr14 78629864 96 + 107821284 aaataaa----AGCAATACATTCCAGGAACTGATTACCTGTGCC---CCTCTTGCTCCC------TTATGATAGATG---AATTAATGGATTCCCGGCTTAAATTTTCTACa a score=249.000000 s hg15.chr4_random 655380 25 + 1219494 AAGTCTTTTATACAAT------------TACATAGCT s mm3.chr5 116851511 37 - 149719773 AAATGCTTTATTTGATGGCCAAAGTAAATGCATAACC a score=32648.000000 s hg15.chr4_random 655405 508 + 1219494 GGTGTTGTTTTTC--------------------------TTTTAACTACAGCATTAATTAATCCTATGGTATGTTATGagagatattccagttacttgcttaaggtttagtaggcag-taagtggagaagcaagaatctgaaattaagactatggtttggagaccgcactcttaattgctTCTCATTAAAC----TGTGTTCTTGTTGCTGACAACAGGACTCTC------------------------CAGTCCAAGGGTCAGTACTGAGCCAAAAATCAGAGGTTGGTTCCACTCATACTCCTATAAAACTTCAACACGTATGGAGTTACCTCACCTGTAAAGTAAAAACAGCTCCCC-------ATCCCAAACTCCAGACCTAATTTTTCCCAAACCCAGTTGAGGA-AAATGCAGCTAGAAAATGCAAGGGAT-CCAGAAAAGTGACCACGAATTGTCTAAAGACCCTATAAAGACCACTGCAGAGAACA--ATGTTCTCACAC---------------ACACTCGTTAATTCCAACCACCCTGCAAGATTCCTCCATGTGCAGATCAAGACTGACTCAGTGTTT s mm3.chr5 116851548 456 - 149719773 TACattttattttttatatataattatattGCTCTGTTGCTTTAATTACAGCATCAACCAATTCTGCAATGTGTTACT---GAGATGACAGCTACT-GCTTGCCATTGAAAATGTAGTTAAGTAAAAAACCAAACCCGTGACAATCAGGGTCGGTATGGAAGTAAGCACTCCTCA---CCCCTCGCCCGCCATCCTGCCTTCTGGTAGCTGACA--CAGACTCTC--------------------------GGCCACAGGCCAGAATGATGCTAAAAGCCTG------------TATATATGTCAG------------AGACACAG----ACCTCACCCTTCAA------------CCCC-------ACCCC----------CCAAATTTTCCTTAAGCCTAGCAAAGAATAAAAGGAG-----AAACACAAGAGAT-CCCAAAGAGTGACC------TGCGCACAAATTCTGCAGGTCCAGCATCAGAAAACC-----------------------------ACCACAGTTAAGTCCAGCACCCCTGTAAGGTGTCTCTATTTACAGATGGAAAAACACCCTGAGGTT s rn2.chr14 78629983 525 + 107821284 tatatattatttt----atataattatattGCTCTGTTGCTTTAACTATAGCATCAACCAATTCTGCAGTGTGTTACT---GAGACTCCAGCTACTCGCTTACAATTGAAAATGTAGTTAAGAAAAAAAA-------GTGACAATCAGACGAGGTGTGGAAGCCAGCACTCTTCA---CCCCTCACCAGCC----TGCCCTCTGGTAGCTGACA--CAGACTCTTACTcaggtcacaggtcacaggtcacaggtcacaggtcaGAATAAAACTAAAAGCCTG------------CACATAGGGTAGGAGTAAGACAA-AGGCATAG----TCCTCACCCTTAAA------------CTCCCACCACCACCCC-AACTCCAAACCAAATTTTCCTTAAGCCCAGCAAAGAATAAAAGGAG-----AAACACAAGGGATTCCCAAAGAGTGACC------TGTGCTCAAATTCTACAGGTCCAGCACCGGGCAACTGCATGTTATGAACCCTGCATTGCCGCAGTACCACAGTTAAATCCAGCATCCCTGTAAGGTGTCTCTTTTTACAGATAGACAAACACCCTGAGGTT a score=17290.000000 s hg15.chr4_random 656207 233 + 1219494 CTGGCTCA----GAGTTTTAAGCTTCAGAGGTCTCACAATAAATAAATGGCCGGCTCAAAACCTAAATCCAAGACTACTCACTCTCAATGCCAAGCTCATCTACTGTAT----TGCAGCACAGAAAATCAAAATGTAAACACGGGAAGAGCTAGCAGGCATACTggggctcttctgtgtagttcagcaccatctccccaccatttagcacagaacaggcctcaataaata----------------------ttt-----------ggt----------------------aaatg s mm3.chr5 116852184 258 - 149719773 CTGCCACACACTAACTTTTG----TCAGAGGACTCAA---TAACAAATCACTGAACTCAGA-ACTGACTCAAGAGCACTAATTCCAAATGCCATGCTCATCTACTGTAC----TGAGGCCCAGGCAGCCAGATT-CAAATTCAGGAAGCACAAGCACACACTTCA-GGCT-TTCTGTCTGGTTCGGCAACATCTCTCCACTTCCTGGGACATGACAG-ACTAAGAAAATAA-----CTGTTCGGGTTTtttgttt-----------ggttgt---ttgtttgtttgGG---GGGTG s rn2.chr14 78630681 286 + 107821284 CTGCCACACACTAACTTTTG----TCAGAGGGCTCAA---GAACAAATGGCTGAACTCAGACCCTGACTCAAGACCACCAATTCCAAACGCCATGCTTATCTACTGTACTGAATGAAGCCCAGA-GGTCAGAGT-CAAATCCCGGAACTCCAACCACACAGTGCAGGGCT-TGCCGTCTGGGTCAGCATCATCTCTCCATTTCTTGGTACATGACAGCCCTGAGAAAACAAATATCCTTTTTCCCTtttttgtttttcccaaagagggttgtgtggtgtgtgtctgtgtctgtgtg a score=10420.000000 s hg15.chr4_random 656440 88 + 1219494 aatgaatGATAAAAGAACAC-AAAATCATTCTGTATTACTAATTTTAACAAAATTTGTTTTCATCCCAAAAAAAAAAAACGATTTAAAA s mm3.chr5 116852594 87 - 149719773 AATGAGGCTTAAGGAGGTACAAAAATTATTTCACATCACTACTTTGTACCAAATTTTCTTTaa--aaaaaaaaaaaaaacaacaaaaaa s rn2.chr14 78631153 86 + 107821284 AGTGAGGGCTAAAAAGGTAC-AAAATTATTTCACATCACTAATTTTTACCaaatttactttaa--aaaaaaaaaaaaagccaggaggag a score=8170.000000 s hg15.chr4_random 656842 72 + 1219494 TAACATCCAGAATCTTCAGATGGCCCATGAACAAATATCAATCAGCATACTCTTAAACAAGTTCTTCCAAGA s mm3.chr5 116853012 71 - 149719773 TGATATCCATTATCTTCACATGG-CCAGGCGCACATATCCATCCAAATGTTCTAAAACAGAAGGTTTTAAGA s rn2.chr14 78631547 70 + 107821284 TGATATTCACTATCTTCACATGG-CCATGAGCATATGTCAAT-CAAACATTCCAAAACAAAAGTTTTTAAAG a score=7741.000000 s hg15.chr4_random 657079 84 + 1219494 ATGTGGG-AAAAAG------CAGAATTTGAC-TTATCTTCTGGCAATGTCAGCTACTTTCTCTATTTTTGCTCCCTCATTA---------------TACTGTTACTG s mm3.chr5 116853914 97 - 149719773 aTTAGAG-GAAAAG--AAGTCGAAATTTAACATTATACTGCAACAGTGCCAACTGCCTTTCCTATTTTTGCTTCTTCACTGGA-------TTCAACTACTATAACTG s rn2.chr14 78632347 107 + 107821284 ATTAGAGAGAAAAGTAAAAGCCCAATTCAACTTTACACTGCAACAATGCCAACTGCCTCTCCTGTTTTTGCTTCTTCCCTAGATTTACTGTTTAACTATGGTCATTA a score=69132.000000 s hg15.chr4_random 657188 929 + 1219494 ------------------------------------ttttttaaCT------ATAGTTTTGTT------GAAGTGAT-GAAATCTTTCAAAAT---CTTTTTATTGAAACAAAATT----------------------TTT-----------------------------------------------------------------------------------TTTCTGAATTTCACTCTGTGAGGGTGGTTTGCTAAGTAAGGTTTGAGTTGGATT------TTATTTTTCTGGAGCAGGGGGAAGGTAGGGAAGTTTGGCAGGATTGTAGATAAGGGAGATTAAAATACTGACCACAAAAAACAAACAGGCAGTTTTGACAGAATTTAATAATCAACAACTAAAAGTTCCTAGTTGTGAAGCAGTTGTTTTATCTGAAAGACAAATGATAAAAGAAAGCTTTGAAAATTATAGCAAGGGCTC-ATAAACTGAGAACACCACAATGGGTAAGTGAA--CTGAGAAAA-ACGTATTTATTCTGTACACGCAAAGGCTGAGACATGA-GATACTTCATTAACTCTGAAACTTCTGAG----GATGGTGCCAGGTTTTCCTTTTTAGAGCTAGGCAGGAAGCATTT------------------------------------------------------AAAAATCACAAAAATAAGCCTAAGAAGACTTGCCAAAGGTATGTTCATTGAAAATTAATTGTGTCAGCTGATGGAG----ACTTGAAAGTCTTTATGCTATCAAGTAATTATGAGTACACAAAATTTTAGATGGTCTAGTCTTCACAAAAACAaggaaatactgtcaggcaggaaaaaaaaaacaagagaa----------aatagtg-tatgtatggcatcttttgtggggagaaggaagagaataagaaaaacattcacatttccttctatttgcataaagaaatgcaggaagaatatacaa----cttacaatggtgatttacttgtaaggaggaacagggagctgggtggat--ggggacagagatgaccaggagaTCCTTTATTTGTTCATAGATATACACACACACatttttaaagattaatttataaaagggaaatttacaaa-ataataaaatttgaaaaataaaaCAAG s mm3.chr5 116854602 952 - 149719773 aaaGGCCCACCCTACCACATT-----------AGGCTTTCTCAACTACTGTAATAGTTTTGCT------GACATTATAAAAATCCTTCAAAATGTACTGTTTCCTGAAACAAAATTTGCCCTGCCTCATTCCTTCCCCTTT-GGTGCTGAGAATCAAACACCACAGGTCTTCAAGGGTAATCAGCCAATACGCCTCTGCTGAACTGCACCCCACTCCCAAACACTTTCTGAAGGACATTCCACAAGGGAAGGTTGCTAAGTAAAAATTTGGTCTGTCCTTTTAATTATTTTTCTGAGGGGAGGGCTAAGTGGAGAAGTCTGGCAAGAATACAAGTAAAGAAG-----------CACTCC--------------CCGCTTCCCCCAGAATCAAAGGT------CTGAATGTTCCACACTGTGAAGTAATTAGTTG---CGAAGAATAA--GACAAAAGAAAGCTCTG-AAGTAAAAGCTAGGACTTGAAGGACTGAGAAGAGCCCAA-----GACTGAATGCTGGGAGAATGGCTCAGTGTTCTGCACACGCAAAGGCTG---CGAGT-GCTGCTGTGTTAGCCCTGAAGC--CTGAGAACAGACAGAGACAGGG-TTCCTCTTTTGATCTAGGCAAGAAGCATTT-------------------------------------------------------AAAATCACAAACATAAGCTTAAGTGAAACTGTCAAAAGTATGCTCTTTGAAAAGTCACCACATAGGCTATTAGAGGTTTGTTT--AAGTCTTTATGCTACCAAGTAACTATAAATGTACA-----------GGT---GTCTTCAC-AAAATAAGGATGTATTGTTAAAT-GAAAAAAGAAAGATACAGAA----------ATCAA---TATAGATGGTATA---TGTGAGGGG-----------TAAGTAAAA-------ACTCATTTATATTTGCATAAATAA--------AAAATCCGCAAGAAACTGAAAATGAC-------------AGAAGTGTAAGGAGCTGAGCAGAC-AGGGGGCAACTGTG--------------TAAGTGt-------------tatatatacaatttaaagttaatttataaaagt--aatttaaaaataaaataCCACTTAGACAATAAAATAAT s rn2.chr14 78632707 1008 + 107821284 aaaagcCCACCGTCTCACACTTTTCAACTACCAGGCTTTTTCAACCACTGCAATAGTTTTACTTTTGTTGAAATTATAAAAATTTTTCAAAATTTACTGTTTCCTGAAATGAAATTTGCCCTGCCTTTTCCCCTTCCCTTTCGGTGCTGGGACTCACACACCACAGGTCTTCAAGGGTGGTAACCCAATACTCTGCTTCGGGGCTGCACCCCAGACCCGAACTCTTTCTGAAGGGCA-TACATGAGGGAAGGTGGCCAAGTAGTAATTTGGTCTGCCCTTTTAATTATTTTTCTGAGGG--------------GAAGTCTGGCAAGATTATAGGCAAGGAA------------CACCAC--------------CACCACCACCCCCAATCAATGGT------CTGAATGTCCCTAGCCGTGAAGTAATTAGTTG---TGAAGTA-AA--GACAAAGGAAAGCTCTG-AAGTAAAAGCTAGGACTTGAAAGACAGAGAGCAGCACGA-----AACTGAATGTTGAGAGGATGCATTGCTATTCTGCACACG--GAGGCTG---CGTGTGGCTGCTGTGTTGGCTCTGAAGC--CTGAG----GGCAGAGCCAGGG--TCCTCTTCTGATCTAAGCaggaagcatttaaaaattgcctgggttcggtccccagctccgaaaaaaagaaccaaaaaaaaaaaaaaaattgcaaacagaagcttaagaaaaacTGTCAAAAGTATGCTCTTTG-AAAGCCACCACATAGGCTACTAGAG----GCTT--AAGTCTTTATGCTACCAAGTAACTATAAATGTACA-----------GGT---GTCTTCAC-AAAATAAGGATGCACTGTTAA-----------AAAGATACAGAACATGGTCTGTATTCATGTTATACACGGTGTA---TGTGAGGGG-----------TAAGTAAAA-------ACTCATCTATATTTGCATAAATAAAT---GAGAAAACCCACAAGAACTTGAAAATGGC-------------AGAGGTATAAGGAGCTGAGCAGATAAGGGGACAGTtata--------------tatgtatt-atatatatatatatatatatatCttaaaattaacttataaaaat--aatctaaaaataaaataCCACTTAGACA---------- a score=1305.000000 s hg15.chr4_random 658197 21 + 1219494 AACCATTA-AGAACGTGAATAA s mm3.chr5 116855554 22 - 149719773 AATCATTAGAGCAAGTGTATAA s rn2.chr14 78633715 13 + 107821284 ---------AGTGGGTGTACAA a score=25469.000000 s hg15.chr4_random 660426 246 + 1219494 ggccaggtggccatatatccagaaaggcactccaggcagagagaaagctagagccaaaactccaggtaagaactggcttttgtttgggaatgggagaggggaataaggctgTCTGTTTATCATCTCCTTTCTTTAAGCATTGAGACAGTTCAGTTACATTTTGGTTAATAAGCAAAGATAAAAAGAGGCTAAGAAAAGAGCATCCTGTTTAATTTTAAATAGAAAACTAATGTCAG-GGGTAGGATT s mm3.chr5 116855749 221 - 149719773 GGCCAGGTGGCT-TGTGTTCAGAACAGC-CTCTAGGCAGACAGACA-----AACAAAAGACCCA--TGAGAA-TAAC--TTGTTCCAGAGTATGAGAATGTATTA---------GTCAAGTACATTATGACTTTTT-GATTAATACATTTCTCTTATGTTGTGGTAAAAGAGCAAATAAACTAAGA----AAGAGTTAAGCATCTTGTTTCACTCTATATAGAAAATTAATGCCAGAGGGTAGGATT s rn2.chr14 78636447 223 + 107821284 CGCCAGGTGGCC-TGTGTTCGGAACAGC-CTCTAGGCAGACAGACA-----AGCAATAGACCCA--TGAGAACTAAC--TTGTTCCAGAGCATGAGAATGTACTA---------GTCAAATACTTTATCACTTTTGAGATTAATACATTTCCTCCACATTGTGGTAAAAGAGCAAATAAACTAAGA----AAGAGTTAAGCATCTTGTCTCATTCTCCATAGAAAAGAAATGTCAGAGAGTAGGACT a score=20960.000000 s hg15.chr4_random 662290 149 + 1219494 gttaactcttaGTATTACTGTCAGAAATAAactatctcccctagtataataaaactcccaagaggacaagaaactggtctgtctca-ttcactactgtattcacagagctgtcacgtaatagtctctcaattaatacatatggaagaaca s mm3.chr5 116858881 148 - 149719773 GTTAACTATTAGTAACAA-GTCAAAAATGCactatctccctcactagaatgcaagtccccacgcggcaagaaacttgtgtgtctGACCCCTCCGCCTTACTCATAAGACAATCA-ATAATAAGGCCTTAATAAGCACACATTAAAGAACA s rn2.chr14 78639908 148 + 107821284 GTTAACTATTAGTAACAA-GTCAAAAATGCActatttccctcactagactctaattccccacagggcaagaaacttgtgtgtctgaccccactgccttactcacaggacgatca-atagcaaggccttaataagtacacattaaaGGGCA a score=75020.000000 s hg15.chr4_random 662442 735 + 1219494 --ACATTTCCAGATCTAACATTTTGGACTAACAACGCTAATCTAAGTTTT----GTTTCTAGAGGCATATGACTAAGAAAAACCTTTGCTTTGCTTCATTCAATCACAA-CTGACGTCCGACTGAAGAGACCCTTGGAGTACAGCA------ACAAACTAAAACACTCCAAATTTCACTCACAAGTTCGCCACTCACAAGGAAATTCCAGACTGCAAATGGAC-AATCTGCATATCAAATTGGGTTTTGTATCTCTGAATTAAGAAGGTCTTATGTTTCCAA-AATCACGTCAATTCCCAAAGTTGA----TAAAGCAAACGTAGCTAGTATGTCTGCCTCTAGATGACTCGATTTGGAGACTAAAGCTCACACAAACAACTCCCAGAGGTAGGACAATAAGAAAAGAAGAAAAGGAGATTTCTAGACCTCAGGGAAGTTATAACTAAGTGAGCATGGTACCTGCTCACTTTATGAAACCCCATAAAGACTGCAGGAAGACTCAGCTAAGTCAGGAAGCACAGGTTGACCAGACACATCAGTATAGAAAACTCTACGTAAGATTTTATA-AGGAA------------------------------------------------------------------GGAAAAAAC---------------CAACACTCTATAATCTAATTAAACACGTAAGGAGGGATTA---ACAGTACTAACCTGAGA---------ATGTTTCTCCTGAAAAAA----AAAAAAAATGGAGCAATAT-------------CAGGGGAACCATTTAATAATTATAAAACAGTAAGATGGAAAAGTATGTCATTATAAAGTGATCTTA----TGAATAACGCA s mm3.chr5 116859032 781 - 149719773 GCACACTGCCTGGTCTAGCATTCTGGACTGACAATGTCCAGCACACTCTG----GATTCTAGGAGCAGCTGACTGAGGAAAGTCACTGTTTCAATTCTTTCAATCACAACCTGACACATCATTCAAAAGGCACTAGGGACAGATCATCATACACTAACAAACAGGTTCCAAATTTC-------AGTTTACCATCTAAACAGGAATTTCAGACCACAAGTAGACAAATCTGTGTGTGAAACTAGGCTTTGTATATCTTTG-TAACTGGGTTTTATGTTTCAAAGAGTTACGTCAATCCCCAAAGCCAGTATGTACAACAAAAGCAGC---TTTATCTGTCTCTAGCTGACTAGATTTGGAGACAAGAG----CATGTATAACTCCCAGAGGGAG--------GGAAATAAGAAAAGGACACTTCTAGACTTAACAGGTACCACAACTAAGTACACAGGGTAC---------TACAGTGAACCCACAAA-ACTGCA-GAAGAACCAGCTAAGTCAGAAAGCTAGGGCTGACTACACACATTAGCATAGCGAAGTCTAAAC-AGATTTGACAGAGGGGATC-----------------------------------------CCAAAGTGAGAATATCTGTGCTGGTAAATACAAAAGACTAGGGATAGAATTCAGTATAACCT-ACCAAATATGTCCCCAAGAACCACATACAATACAAGCACAAGATATACCTACATATTCCTACTATATATAATGTGCAATTAATAG-TTAATATATTTGATTCTATATATAGGGATGGTTTGATAATTATAGAACAG---GATG--AAAATATTACATAAT-AAGTGATCTTAAATCCAAATGAGGTG s rn2.chr14 78640271 730 + 107821284 GTACACTTCCTGGTCTAGCATTCTGGACTGACAATGTCAATCATACTCTGTGTGGGTTCCAGGAGCGTCTGACTGGGGAAAGTTACTGTTCCAATTCTTTCAATCACAAACTGACACATAATTCAAA-GGCACTGGGGGCAGAGAGTCATACACTAACAAACAGGTTCCAAATATC-------AGTTTACCATCTAAACAGGAATTCCAGACCGCAAGTGGACAAATCTGTGTATGAAACTGGGCTTTGTGTATCTTTG-TAACTGGGTGTTATGTTTCAAAGAGTTACGTCAATCCCCAAAGCCAATATGTACAACAAAAGCAGC---TTTATCTGTCTCTAGCTGACTAGATCTGGAGACAAGAG----CATGTATAACTCCCAGAGGGAG--------GGAAGGAAGAAAAGGACACTTCTAGACCTAAGAGGTACCACAACTAAGTACACAGGGCAC---------TACAGTGAACTCACAAA-ACCGCA-GAAGCCACAGCTAAGCCAGAAAGCTGGGTCTGACTACACACATTAGCATAAAGAAGTCTAAAC-AGATTTGACA-AGGGGATCATTCTGCAGTCTTTTATACACATTAGGGGAACAGCACTAGTCTAAAGTGAGAGTGTTTGTGGTGGGGGATAC------------------------------------------------------------------------AGATATA---------------TATATATA----GCAATTAATAG-----TATATTTGATTTTATATATAGGGATAGTTTGATAATTATAGAACAG---GATG--AAAATATTATATAAT-AAGTGATCTTAAACTCAAATGAGAca a score=10769.000000 s hg15.chr4_random 663278 99 + 1219494 AAAATGGGTGAGGATTAAATAAAAAGTTTCATTTCCTTTTGGCTTACATACTCCGAAAAGGAAGCAGA---GGCTATCACTAAAATTTCTCTGTTTTGGTAG s mm3.chr5 116861229 95 - 149719773 AAAGCAGGTTGGAGTTCAGTATAA-GCCAC-GCTCTCTCTG-ATCACACATGCTGAGAAGGAAGCAGG---GACTATAACCCAAGTTCTCCTG-CTTGGTAG s rn2.chr14 78642816 100 + 107821284 AAAGCAGGTTGGGGTTAAGTGTAAAGCCAC-TTTCTTTCTGGATCACACATGCTGAGAAGGAAGGAAGCAGGAGTATAACTCGAGTTTTCCTG-CTTGGTAG a score=48.000000 s hg15.chr4_random 663377 21 + 1219494 ATGGGAAATGTCTGCTTTGGt s mm3.chr5 116861324 21 - 149719773 ACTGGCAGGATTAGCCCTCAT a score=3249.000000 s hg15.chr4_random 663487 113 + 1219494 TGAATTTTTTTATATGCTTATTTACATTTAAAATTTCCCATGGCCTATGAT--------------TTCCTTTGTAC----ACATATCTGTTGAGATCTTGATGTATTTATTTCTACACATCTGAAAAAAAT s mm3.chr5 116861455 131 - 149719773 cAAATGTTTATATATCTCTATACTTTTTAAAAAGTTACAAGGCCCTAAGTTCAATCTTCCATTTATTTTTTTCTACTTTTTTCTATCTCTTGAGATCTTGATGTATTTATTCCtataaatttaaaaataat a score=13917.000000 s hg15.chr4_random 663646 79 + 1219494 TATCTTCTATAATTTTATTTTTCAA-TAAGAAAATATTTTAACATTTTGCATATTTAGGTTGACAAAC----CTTTTCCTTTGT s mm3.chr5 116863196 84 - 149719773 TATCACCTATAATTTCACTTTTCCATTAAGTAAATAGTATACTATATTGCATATTCACATTGGCAAACTACTCTTTTCCTTTGT s rn2.chr14 78643805 84 + 107821284 TATTGCCTATAGTTTCACTTTTCCATTAAGTAAATACTTTACCATTTTGCTCATTCACATTGACAAACTATTCTTTTCCTTTGT a score=5616.000000 s hg15.chr4_random 663725 32 + 1219494 GATTTCTTCTGGTTTTAAAAAGAAA-GTTATCA s mm3.chr5 116863505 33 - 149719773 GATATCTTCTACTTTTAAAAAAAAAAGTTACTA s rn2.chr14 78644105 32 + 107821284 AATATCTTCTACTTTTAAAAAGAAA-GTTAcaa a score=38353.000000 s hg15.chr4_random 663773 343 + 1219494 -------CATCTAATAAAATGTTCCAAGAAAATGTTAAGGCGTTATCTCTGATAAACATTTTATTTTGCTTTTTCTCCACAGTGCCTCTATAATTTTAAACATTTCTTTTTAATCCACCTGGGATTTATTTTGATGAATGGTATGTTTTCCAGCTATCACATCATCAACAATCCCTTCTCCCCACAGACATAGAGGCG-----------------CAGGGCCCAATGATGCAGGTTTTGACTTTGTA---CCAGCAACGC-CCTACGATCACTTC----------------------CATAGGCTTATTGTCTtctgtacttcagtttccacatttgtaataaaatacactcggtgatatgttcccaggttgttggggcaattagaaataata s mm3.chr5 116863891 359 - 149719773 -------CATTAAATAAAATGCTCTGCCAAAGTTTTAAGCCATTATTTCTGATACACATTTTTATCTGCCTTTTCTCTAT--TGCCTC--CAATTTTAAACCTTCCCCTTTAATCCAC---AGACTTATTTTGATGAA---TATGTACAGCAGTTATATAATTGTCAAAGCTCCCTCCTTCCCACAGAAGT-GACTCGGTTTCTTCTCGCCCCTCCAGCAGTCCGCGAAGCA---CATGACCTTGCACTTCCAGCAGTGTGCCCTTAACTACTTC---TCTACAACAGTCCAACCTTGGAAAGCTTATCATCGTTTGAGCC--AGTTTCTTCACTTGCAAC-AAACAGAGCC-------TGTTCTAAGACTCCTGGGGCTATTAGAAATAGCA s rn2.chr14 78644462 365 + 107821284 AGGCACACATTAAATAAAATGTTCTGCCAAAATTTTATGGCATTATTTCTGATACACATTTT-ATCTGCCTTTTC-CTAT--TGCCTC--CAATTTTAAACCTTCCCCTTTAAGCCAC---AGACTTATTTTGATGAA---TATGTACACCAGTTATATAAATGCCAA-GCTCCCTCCTTCCCACAGAGGT-GAATCGGTTTCTTCTCTCCCCTCCAGCGTCCCATGAAGCA---CATGACCTTGCACTCCCAGCAGTGTGCCCTTAACTGCTTCAGGTCTGCAACAGTCCAACCCTGAAAAGCTTATCATGTTTTGTGCCT-CGTGTCTTCATTTGCAGT-AAACACAGTC-------CATCCT--GACTGCTTCGGCTATTGGAAATAGCA a score=18766.000000 s hg15.chr4_random 664310 117 + 1219494 GGTGTGGTTTTGGA---AATGACTGAGTGAAGCAACTAAAGATAAGCCAACCATCTGTTTAACTGAACAAATGTGAGTGAACTTTAATGCACCCTATCCTGTTTATATTTCCAAAATCTG s mm3.chr5 116866821 117 - 149719773 GGTGTGGCTTTGAAAACAACAA-TGGGTAAGTCAACTGGAGATAAGCCATTTATCTG--TAAAGGAACACATTTGAGTGAACTCTAATTCACCCTAGCTTGTTTATATTTCAAAAATCTG s rn2.chr14 78646040 113 + 107821284 GGTGTGGTTTTAAA---AACAA-TGGACGAGTCAACTAGAGATAAGCCA-TTATCTG--TAAATGAACAAATTTCCATGAACTCTAATGCTCCCTGGCTTGTTTATATTTCCAAAGTCTG a score=5820.000000 s hg15.chr4_random 664427 28 + 1219494 TCTGGTATCACTAGTGCAGAAAAGAATC s mm3.chr5 116867099 28 - 149719773 TCTGTCATCACTGATACAGAAAAGAATT s rn2.chr14 78646149 28 + 107821284 TCTGTCATCACGGGTACAGAAAAGAATT a score=10386.000000 s hg15.chr4_random 664455 122 + 1219494 TGGTTTGGGTGTTTATCAAAATTCCACCAGCCTTGCAATGCTGATTAATAAATGTGCTCAATTCCTATCTATGGTTTATAGtctaaggccagagaacccaggttctgatcccagttcactaa s mm3.chr5 116867386 120 - 149719773 cAATTTAAATCCTTTTAAAAATTCCATTACCACACCAATTGGGATTTTAAAATGTGTTGGATCC--GTCTAGTGTTTAggccctggagtcagaccgcctgagttcggatcccagttcactga s rn2.chr14 78646600 119 + 107821284 AAATTAAAATTTTTTTAAAAGTTCT-TTACCATACCAATTGGGATTTTCAAACGTGTTGGACACATGTCTGATGTTTAGGTCCTGCAG--GAACCACCTGTGTTGGGATCCCAGCTCACCCA a score=8707.000000 s hg15.chr4_random 664577 73 + 1219494 accgc-------gtaaccttaggcacatttcttcatctctgtctatttcagtttcttcatctgtaaaatgagaa--tcatta s mm3.chr5 116867843 72 - 149719773 cctactagttatataaccttaggcccatctctgcaggcctgc--------atttcttcatctgcaaaataagca--gtgtta s rn2.chr14 78647055 74 + 107821284 ctcactggttatataaccttaggcccatctctgccggcctgc--------gcttcttcatctgcaaaatgagCACAGTGTCA a score=17777.000000 s hg15.chr4_random 667476 193 + 1219494 CAGAATATTAGTTTTAGACTTCGTTAAATAT----------GCATAGCAAAATTTCAAGGGTAATCACTAAAAGAATATTAAGAGTATGTCATTTCCAAACCAAAAGATG---GAAGAATATAAAGAAAAA-CAAACAACTCCCAGTTGTTTAAAAAGGCAAGCATGGGGAGAAAAGACAAACAGAATACAAAACCTAAGATGATAA s mm3.chr3 94531940 189 - 160674399 CAAGATATTAATTTTTGTCCTCATTAAATAT----------GCATCATAGAATTTTAATAGTAACAACTAAAATAATAGAGATGAAATATT-TTGCTAGTGAAAAAAATT-ACTGAGAAAATACACAAAACTCCGACAATCCTC-----CTTAAGAAGCCTATACTGAACAGAAAA-AGATGGGGACTAGAAAGATTAAAATAACAA s rn2.chr2 96010537 197 - 246339213 CAAGACAGTAATTTTGGTCttaattaaatataattaaatatGCATCATAGAATTTTAATAGGAACAACTAGAATAATAGAAATAAA------TTGCTAGTGAAAAAAATTTACCAAGAAAATACATAAAACTCCAACAATCCTC---TCCCTAAAAGGTCAATAATGAACAGAAAA-AGAGGGAGAGTAGAAAGATTCAAATAACAA a score=25732.000000 s hg15.chr4_random 674578 209 + 1219494 AGTTATCAAAAACAGTGTTACACATTAGTTATAACAACTGTTTAAAAAGGTACTTCTAGAAAAATTAA-----GCTCAAAAGGCAAACTGTATTAAATGTGCTTCCCCTCATTCCTTTAAACT----CAAGGTTCCTCAATGTAGAAAGGCCAGAATAAGCATTAACAATTAAACAACTCTATTAAAGTTTAATATTATGCTATGTTAAGATTCCTAt s mm3.chr5 116869701 189 - 149719773 AGTTATCAATA----CATTCCAGGTTACTCATATCAACTGGTTTAAACTGTACTTCTGAAAAAATAAA-----GATCAA---ACAAACTGAACTAGA----------CCGTTTCCTTTTACTTTCCACATGATTCCTAATTGTGG-AAGGTCAGACCAAACATTAACTATTAAACAGTTCTGTTAAAGTTTAAAATCATGTTAA------ATTCCTAT s rn2.chr14 78649508 192 + 107821284 TGTTATCAATA----CATTCCAGGCTACTCATATCAACTGGTTTAAACAATAGTTCTGAAAAAAAAAAAAAAAGATCAA---GCAAACTGAACTAAA----------CCCATT--TTTTACTTCCCACATGATTCCTAACTGCAG-AAGGTCAGAACAAACATTAACTATTAAACAGTTCTGTTAAAGTTTAAAATCATGCTAC------ATTCCTAT a score=15088.000000 s hg15.chr4_random 677038 137 + 1219494 ACTGTTGAAACTGGTTGAGAAAAGG-------GGTTTATACTATTCTCTC-----TACATATGTGTATATGTTAAGAG----GTAAACATGGAAG---GAAAGAAAGGAAGGGCAGTCAATCTAACTCTAAGTTTCAAGCAAT-AAGTAAATATTTT------ s mm3.chr5 116870586 156 - 149719773 ATTGTTGAAACTGAATGCATAAATAATGACTTGTTTAATGCTTATCTCTCAAACGTGAATGTGTGTATATG-GAAGAGTTTATTCAACACGGGAGAGAGGAAGGAAAAAAGAGAAATCAATACAAAC---AGCCTCATGCAGT-AA--AAATACCTGGGCACT s rn2.chr14 78650238 158 + 107821284 ACTGTTGAAACTGAATGCATAAATAGTGACTTGTTTAATGCTACTCTCTCAGATGTGAATGTGTGTATATG-GAAGAGTTTATTCAATATGGGAGAGAGAAGGAAAAAGAGAGAAATCAATACAAAC-TAAGCCTCATGCAGTAAA--AAATACTTGGG-ACT a score=169.000000 s hg15.chr4_random 677175 10 + 1219494 ----GTTATCTTTC s mm3.chr5 116871134 10 - 149719773 ----aGTATTGTCT s rn2.chr14 78650789 14 + 107821284 TGTACGTACCTTTT a score=52432.000000 s hg15.chr4_random 677185 406 + 1219494 ----------------AAAGCATTTCAGTATTTACTTTTCTTATTCAATTCAAAGACTATAAGAACTAAAAACTAAAAATCATGTAAATAAACAGTTTTTATGGCAAAATCAGTAACACAAAACTGAACACCAAACAAAACCTTCTCAGTATATCAGATAACATCAAAAGAATTAAGGGGAAAAATGACCAGCTTGTACGAAGTATATTTTAGAAGGAAAACTATCTCACAATTCGGGGACTGGCTAGAGTTTAGACTCACATCACTCAGCGACTCTCCGAAACTTTAAAACCTAAAGACACCACAAGTAGAAAACTAACAAATCATACCAGCTGTCCATACCATTGTAAACCACATCGAAACTCTGAAAAGCAGTTTTGACTGCCCAAATCATCCACTTCCTGAAAAGACAACTTTACTAT s mm3.chr1 33908867 347 - 195869683 ----------------gAAGTACTTCAGTATTTGACTTTCTGATTCAAT---ATGATTACAAGA----------AAGAACCA-----------GGTTTTTGTGGT-CAATCAATA--ACAAAACTGAACACCA-----------------GTATCAGATAACATCGAGAGGG--AAGTGAAAAGGTGAGTAGCTTATATAAAACAGACCTTAGAAAGGAAATCATCC--CAGCCAGGAGACTGAGTAAAAGTCCGATTCATTTCATGCACTGACTCT--GACTTTCTGTGTCTT--AGACACCACAA-CAGTAAAGCAGCAAATCATACCAG-----GGCACCACTGCAAACCACATCAAAACCCCAAACAGCAGTTTTGAATGTCAAAAACATTCACTTCCTT-AAAAACAACTTTCTTAT s rn2.chr13 41944256 364 - 105800825 gctcAGTGTTTCTTTTGAAGCATTTCAGTATTTGACTTTCTGATTCAAT---ATGATTACAAGA----------AAGAACCA-----------GGTTTTTGTGGT-CAATCAATA--ACAGAACTGAACACCA-----------------GCATCAGATAACATCCAGAGGG--AAGTGAAAAGGTGAGTGGCTTATCTAAAACAGATTTTAGAAAGGAAATTATCC--CAGCCAGGAGACTGAGTAAAAGTCAGATTCATTTCATTTACTGACTCT--GACTTTCTGTATCCT--AGATACCACAA-TAGTAAAGTAGCAAATCATACCAG-----TGTACTGCTGCAAACCACATCAAAACCCCAAAAAGCAGTTTTGAATGTCAAAAACATTCACTTCCTTAAAAAACAACTTTCTTAT a score=2845.000000 s hg15.chr4_random 677617 27 + 1219494 AAGGAGTATATTAAAATTTTA-ACGTAg s mm3.chr5 116871576 28 - 149719773 aCGAAGCATAGCAAAGTTTTAGAATTAA s rn2.chr14 78651279 28 + 107821284 AAGAAGTACTTCAAATTTTTAGAATTAA a score=194073.000000 s hg15.chr4_random 677932 1979 + 1219494 GGTAT--------CATCGCGGGCCTTTGTCCATTCAAGGCTCCAAAGTTTACAAAC----TCACTTTCATACAATTCACAccctctgcctgaaatgccctcctctctctggtgcctgttgaactcctactcatccACTCCAAGCTTG-----------TTTTCACTAGGCGCCTCTACTCATAGACACAGTCGACCTATCAGCATTCTATTTCCTATCCCCATTAAGATCTCAGTCAATTTTT--CACACAAAAAATCTTTCTTTAA---CTTACCAGTAATGCAT-------ACAGCTATCAGCTATGTCTTTGGTCTTTGGAGATATGACAATTGCTTTTTGTCTTTCTAAACAT-AAATTATGCTCAAACCAACAACAGTTTCAGGCGAACCAAAATACGTT-TTTCAAGGTGGGTATGCATAAAGTGAATGCAAATTACCTCCCAACTATCTTGAGCC---------ATTACAAGAGCAAAGATAAAAGTCATCCTAACAGGGAAAGGCCCTCTGACATCTCCCAAAAAACGAAAATAAAAGATTAAGAAAAAAGAAAAGAGAGGGAGGGCAAAGGTGACCAACAGCCCCATCGCTGATAAAGTTCCACGATTATCTC---TCGAGCGTCCGTCGGCAGATATGGC--TTTTCTCTTTTGGCAGAAGCCGTC-GTTTTTAAATACGAGAGCCGA-----------CAGATGCGTCCGTACACAAACCTTGCAGCCACCAGCGCTGCGGACCGCGGAACCGGTCTCACAAGCAGGATGCTGACCAGCGTCCAGCCAGGGTCGTCCTCCTCCGCCCCCACCCCTGCAGCCCACAAGCCGGC-CAGGAACGAGC-GGCC-------CGGGAAAAGCCTAGTCC--CCGGGGTCCTATCCCGATGAAAGAT-CTGCGGCGCCCTCGCTCCCCGGCTCGGC--CCAGGCCGAAGGCCCCGCGGGGACCCCTCCAAGAcgccctcggcgccgcagcggcctccccgccccc--------------gaggctgcccgggccgccgcaggccccgcg--------gcccccgcccgccgcaaccgcggcccagttccccgcgcccccgccgccgcctca-gcccgaaccgggcccccgccgcccc----cgcTAGCTAGCCTCACCTCAGAAGCGAATCGTGGGCAGCGCGCGGGATTCCGGGGTCCCAGTGCGGCCACCGCCCGTCGGCTCCGGCTC-----CGGCTCCGCCCCC-----GTC------CCCTGGCCCGCAGCAGCGGCCCGCCAGGCCTCTCCGCCCCTCA------GCCCCTCCGCTCGCCCCCACCGCCCGACCTGGGTGCGGCCTGCGGCGCTGCAGCCCAACAACGCGCCGTCCCATAGGCCAAGCCGCGC-AGCACTGCCGAGCAACGTACCCTGCGATTGGCGGGACCCATG--AGGGGCGGGTCCCCTGCGGGCAGGGCGATTGGACTCGCCAGGCCCGCCTCGGGGCGACCCCGCCGGGGCCTGCGGAGGCCCAGGGTCCCGCGCGGAGTACACCCCGGCCGGCAGCTTCGGGCGCCAGGTCATGGCTTCACGGTGGCCAGGTAGACTGCGGCGAGCCCCTGCCGG------GTCCGCTGGACACGGTTTCATTGTGATTGACCTCCGCCGGAGGGGCTGTCGGAGCCCAGGGACCCT-GCCCTCCCGCCG-------CCGCCCAGCGCACTCCCCCAGCAGACGGGCCCTGCCCCGCGTAGCCCCGCCTTGTGCA-----GTCCCCAGGCCGAGTTTTGGGG-------------CCCGGGTGGGGTCAAGGCAGCAGGGCCTGTG-G-GCCCCGATAAGGCTCCACAGAGGACAACTGCCTGGCCCCCGGGCCCGGCCTGCGGGTGCTGAGGAGACCAGCGAGCACCAGCCACCTCCGCACGACCAGGGAGTGAGCCT--GCGGGGCTTTGGCAGGACCAG-CCTCAGACCAGCACCTTCCCGCAC----------------------ACTGTCCCTCCTGCTGGCGCATCTGACACCCAAAAAAACAAGCAGCGAGACAAATGGGCACGGCTGCTTGTCCTCTTGACACCCATAGAAAGCTTAGGTCCAGAGCTGGG--C-AGTGGCAGAAGAGT--------------------------GTGGAATCCAGACCTC s mm3.chr5 116871604 1828 - 149719773 AATGTGATCCCTACGTCACTGGCTTT----AATTAAAGACTGCGATTTTTAGAATC----CCACCCGCATAAAACT--CACCTCCGACCTGCAACCTCC-TTCCTCTCTGGAGCCTGTTGAG--TCCACCCA-CGACTCCCAGCTTG-----------CTTGCAAAGG--------------AGACATAGCGGATCCCTTAGCAATCTAGTTCCTATCCCGACTGAGATTTCAACCCACTTTTGACAAACACACAATCTCTCTGAAATTCTTGAGCAGTTATGCAT-----AGACAGATTTTAGCTTTGTTCTTGGTCTTTGGGAGTTTAACAA-------------CGTTAGGCCTAAAATCATGGTCAAAACAACAGCAGTTTCAGGTGAACCAAAATATTTATTTTTAAGATGGGTGTGCATAAAACAAACACAACTCATCTACCAAATACCTTGAACCAGGAACTGAATTATAAAAACGAAG----------TGTTTTTAGGAAGAGGTCT----------------GAACG-------------------ATAAAACAGAGAGGAAAGGCA------------AGCCCCATCTCC-AGGAAGTTCCACGACCACCTCATTACTACCATCCGTGGACAGAGCTGGCTTTTTTCTCTTGGGGCAGAAGGTGTCAGTTTTTAAA----AGAGCCGACAAGCGGAACCCAGATGCACCTTTCCACAATCTCTGCAGTGACCAGCATTTGGAGCCAC-----------CATTAGCACAATGCTGAC----------CCGGGAG-----------------GACCCCGAGGCCCACCAGGAAGCTCAGAGCCGAGCAAGCCGCTTCCACAGAGAACCCCGCGTCCGTCCGGG---CCATCCTGGGAAGCGACGATGCAGTGTCCTCGCCCCCGCACTCGGAGGCAAGCACCTAGACCC--CGGGCACCCC---------------GCGCCGCAGCGACCTAGCCGCGCCCTCCTCAGCGCACCAGAGGCGCCCCAG--------AGGCCCCG----------Ggccctgcccagccctgcc-ctgcccG---CCCAGCACCGCCGCCCCTGCCCTACGCCCGCTGGGGGCCCCGGAGACCTCGCCGCGCTCCCGGGCCTCACCTCCGCGGAGAATCGGGGAGAGAGCAC-GGCTTCCCGGGTCCGAGTGCGGCCGCCGCC--TCGCCTGCGGCTCGCGCTGGGctccgccccctggctgccgcgcaccccccgccgcctgcagcagccctc--gtcctctcccgccctcaaccctcacccctctactcgcccccgccg-ccAAGCTGGGTGCGGCCTGCGGCGCTGCGGCCCAACAATGCACAGCCCCATTGGTCTGAACGCCCTACCGCCGTCCAGCACTACTCTCTGTTATTGGTCAATCTTAAGCAAGGGGCAGGCCC----GGAGAAGGGC--------------------------------------GGGGCCCTGGGAGGCGGAGAGAA-------GGGTAGACTCCGGCCTCCGGCTGAAGGC----------GGTGTCACAGTGG-------GATTAGGGGTCGCTTTGGCTGC------GTCCG--GGACGGCGG-------------------GCTGGTGCACCTGCT----CACAGGAACGCTAGTTCTCCCACTGAGACGGTCAGACCCACAAACTGACT--GCGAACGGACACGGTC-----TAGGTGCGCTTCAGGCGAGAAGATCAGTAGGC--AGTTTGGGAGACTGGGCTGTCAATCAGGGTGGAGTCAGGACTGAGATGTCTGTGTGTGCTCTGATAAAGCTCCACAGA------------------CAGGAAGGGCCCGCCGGATGACAGTGGATTAACAAACACC-GAGGCCTCTTCAGAGGCAGGGAATGAGGCTAGGTGAGGCCTTGGCAGAACCAGTCCACCTGGCAGCGACCTGGTAAACTAACCTAAGGA-TCAAGTCCCTACTGTCTCTCCTGT-----CAACTGAATCCTAAAAGACCCA--AAGGAAACAAAGGGGTCCCGCTCCTGGTTCCCTTCA-AACCATTAAAGGTTGAAGCCTCGAGCCTGGCTCAAGTGACAGAAGTGT-----------------------------GTATCCAAGCCTC s rn2.chr14 78651307 1883 + 107821284 AATGCGATTTCTACATTACTGGCTTT----AATTAAAGACTGCAATGTTTAGAATCATAAACACCCTCATAAATCT--CACTCCCGACCTGAAATGTCCTTTCCTCTCTGGAGCCTGTTGAA--TCTACTCA-TGACTCCCAGCTTGTTTGCTTGCGTTTTGCAAAGG--------------AGACACACCGGTTCCGTTAGCCATCTAGTTCCTATCTCGATTAAGATTTCAACCCATTTGTGACAAACACAAAATCTCTCTGAAATTACTGAGCCGTAATGCATACAGCATACAGCTTTTAGCTCTGTTCTTGGTCTTT-GGAGTTTAACAA-------------TGTTAGGCCTAAAATCATGGTCAAAACAACAGCAGTTTCAGGTGAGCCAAAATATTTA-TTTCAAGATGGGTGTTCATAAAACAAACGCGACTCATCTACCAAATACCTTGAACCAGGAACTGAATTACAAAAACGAAG----------TG-TTTTAGGGAGAGGTCT----------------GAACG------------------AAAAAAACAGAGAGGAAAGGCA------------AACCCCATCTCC-AGGAAGTTCCACGACCACCTCATTACTACCATCCGTGAACAGAACTGGC-TTTTTCTCTTGGGGAAGACGTTGTCAGTGTTTAAA----TGAGCCGACAAACGGAACCCAGATGCACCTTTCCACAATCTCTGCAGTGACCAGCGCATGGGGCCAG-----------CACTAGCACAATGCTGAC----------CCAGGAG-----------------AACCCCGAGGCCCACGGGCCAGCTCAGAACCGAGC-GGCCACTTCCACAGAGAACCCGGCGTCCGTCCGGG---CCATCCTGGGAAGCGACGATGCAGTGTCCTCGCCCCCGCACTCCGAGGCAAGCACCTAGACCC--CGGGCACCCC---------------GCGCCGCAGCGACCTCGCCGCGCCCTCCTCAGTGCAGTGGAAGCGCCCCAG--------AGGCCCCGCgccctgcccagccctgcccagccctgcc-ctgcccg---cccagcACCGCCGCCCCGGTCCTACGCCCGCTGCGGG-CCCGGAGACCTCGCCGCGCTCCCGGGCCTCACCTCCGCGGAGAATCGGGAAAAGCGCAC-AGCTTCCCGGGTCCGAGTGCGGCCGCCGCC--TCGCCTGCGGCTCGCGCTGGGCTCCGCCCCCTGGCTGCCGCGCA-CCCCCGCCGCCTGCAGCAGCCCTC--GTCCTCTCCCGCCCTCAACCCTCACCCCTCTACTCGCCCCCGCCG-CCAAGCTGGGTGCGGCCTGCAGCGCTGCGGCCCAACAATACGCAACCCCATTGGTCTGAACGCCCTACTGCCGTCCACCATTACTCCCTATTATTGGTCAATCTCCAGCAAGGGGCAGGCCC----GGAGAAAGGC---------------------------------------GGGTCCTCGGAGGTGGAGAGAA--------GGTAGACTCTGGCCTCAGGCTGAAGGC----------CGCGTCACTGTGA-------GAGTAGCGGTTGCTTTGACCACTGTAAGGTACA--GGACCCGGG-------------------GCTGGTGCGCCTGCT----CACAGGAACGCTGGTTCTCCCACCGAGACTGTCAACCCCTCAAACTGACT--GCAAACGGACCTGGTC-----TAGGTGCGCTGCTGGCGAGAATATCATTAGAC--AGTTT-GGAGACTGAGCTGTCAATCAGGGTGGAGTCGGGACTGCGACGTCTGTGTG-GCTCTGATAAAGCTCCACAGA------------------CAGGAATGGCCCGCCGGATGAGAGTGGATTAACAAACACT-GATGTCTCTTCACAGTCAGGGAATGAGGCTAGGTGAGGCCTTGGCAGAACCAGTCCACCTGGCAGCGGCTTGGTAAACTAACGTAAGGAGCCAAATCAGTACTGTCTCCCCCGT-----CATCTGAATCCTAAAAGAGCCA--AAGGAAACAAAGGGATCCAGCTCCTTGTTTCCTTCA-AGCCATTAAAGGTTGCAGCCTCAAGCCTGG--CAAGTGACAGAAGTGTGGTAACCAAAAAAAAAAAAAAAAAGTGTGGTAACCAAGCCTC a score=253.000000 s hg15.chr4_random 679911 26 + 1219494 CCTGCTCAGCAGGAGCCTCTGTGACA s mm3.chr5 116873595 23 - 149719773 TCCTCACAGCAAGAG---CTCTGAGT a score=14640.000000 s hg15.chr4_random 679937 103 + 1219494 TTGCCCCAACAAGGGTCAGGGATACTGTCTGGATGGAAGCCAGCGACCCCTGTTCTA--ACCATTTCTGTTGGACGTTGGCTTTTCCAAGACGATTTTTCTGACA s mm3.chr5 116873618 103 - 149719773 TTGACCCCATAAGGGTCAGAGAGGTTG--TGGATTCCAGTCAGTACCCTCTGTCCTAGGAACATTTGCCCTACATGTTGACTGTTCTCAGATGACTTTTCTGACA s rn2.chr14 78653213 102 + 107821284 TTGACGCCATA-GGGTCAGCGAAATTG--TGGATTCCAGTCAGTACCCTTTGTCTTAGGAACATTCGCCCTACACGTTGACTGTTCTCAGATGACTTTTCTGACA a score=10392.000000 s hg15.chr4_random 684189 75 + 1219494 catggacaaaactgttgctagcagcattgtgtgtagttaccccaaactagaaacaaaccaactgtccatctacag s mm3.chr5 116880157 74 - 149719773 catgggtaagatggctgctggcagcactatctgtaattgtccccaaatggaaac-tatcagacatccatgtacag s rn2.chr14 78658921 73 + 107821284 CGTGGG-AAGATGGCTGCtaacagcactatctgtaattgtccccacatggaaac-tctcaggcatccctctacag a score=60871.000000 s hg15.chr4_random 684478 1200 + 1219494 tgaaatgaatctgtgaactacgatacagccaaacaatggaagt-ttttagcaatgaacatgcacaaactatactacgcacagcaacatgaataaa-tctcacagacataataacgagccaaagaagccagctgccagaatttgcatctgtatgattcaaggg-gataaagcacagaaacaggaaaatactgcaatgcctgcataattgggtgctgaagactttttagaaaaacaagaacacaagactcacataagccagggcagagaggccggaagtg-----------acactgtgaggggagg------------gcacttgggtgct-ggcaaaactatttcctgatggtggttgcagatcgttcacttcctaacagtgtgttaggttgtgcatttatgttttattcacttttctgtatgttgttttattctgcaGGAAATGAATGAAAAAGGGATTCTGCCTCAGCTCTGAGCCCCTCAGAGTGGGGCCAGGGAAGAAGCAGACGGCAACGCCAGGGCAGCTGTCTGGCAGCCTGGAAGGCCTGCGAAGCTTCCTAGGGGTCCGAAGGAGGGTAGACAGGT-AGGGGTCTGCTCTGTACCCATCAAATCTCCCTCCAGTGAGAATGGTTGGAAGATGGCTTAAAAGGGTTCACCACTCACACACACTTCTGAGGTGGTGGGGGTTGTCTGTCAAGCATCTTCACAGGGTCACTGCCCCTCTTCCCCAAGGACAGGCAACCTCCTGGCACTGCCCCCTCAGCA-GGCAGTCT-----AGGTGGAGGGAACAGGGCGTGCAGGCAGAGATAAGGCAGGGGGTGTGTGCGAGGTGCCCAGCGAGGGGCTTGATGCTG------------CTGGGTCACAGAAACAGAGGTTGTGGCCCTTCCCCCATTCCCCTCGTCTAGAGACAAGCACGGCCCTCCCATGTTCCTGGTGTGACCCTGGTGT--CCTAGGCCATCCCTCCAGCGCCTGGATCACCCTCAAaagcctcttccctgctgagcttcaatctgcctttctatgaaatggccccaataagccctgcctgcctcagggAACTAAGCCGCAGGTCCCAGGTCCCCCTCTCCCCCAATGCCCACCCTCGCCCATCCTGAGGTGCAGGAAGCACCTCCCTGGGGCTGCGCTGAGCCCCAACCAGCAGGGGAGCTCCGCACAACGTGGCCCAGAAGGATCAGTGGGAAC--CGAGGTTTCTTCTGGT--TCTAAAAACAT s mm3.chr5 116880231 905 - 149719773 tgagctggatctgtcagcagcgatgcagtcacacaatggaactgtttcaacaacggacttgaacaaagttagctatgtgtggcaatacgaacaaa-tctg---------atactgagccaacggagtgggatgccaaagattgcatctgcatgattctgttgctacaaaacacaaaaacaggaaaGTGCTGGGATGGGTGAAGA---------------TT----------ACAAGACCATGAGATTCACCAAAGCCAGGGCTGAGGAG--GGGAGGGTTGGGAGGGGAGGACTGGGAGGGGAGGCTGTGATAAGAAGCGTCTGTGGGTTAGGTACTGCTCCTCCTCCATCGTAGACAC------------CCTTTGCAGCTTGCCACACTGCACATTTA-----TATTTACATTTCTGTG---TGTTTTATTTCACAGGAAATGAAGAAGAAAAGGAGT-TGCCTGAGCTCAGAGTAGCTCAG-GACATGGGAGGGAAACAGCTCTTG-----GGCAGTCCAGCTGTCAAGAGGCT--GGGTGCC------------------TGTGTAGAAGGGTAGATGAGTCAGAGGTCTGCCCTG--CCTCTCCAGTCTCTCT---------------------------------------------------------------------------------------------GCCGCTACCC--CTTCTCTAAGAAAAGGAGGTTTCCT--TAAGGACTCCATAGCCAGGTAGTCTTAACCAGATGGAGGAAACAGAAGATGCAGGTAGATGCTTG---CAGGATGTATCCAAGGGGTGCAGTGAGGTTCAGATCTGTGTTGTTCTCCTTTCTTGTTCCCAGACAC-GTGGATTTGGTTCCAGCCCTA-------------------------GATCTACTCTGT--------AGGCCCTGGCATTGTCTAGAAATTCTCCCCAGGGCTTGTATC-------AAAGCCTCTTCTCTATTATGTA-------------------------------------TGCCTGTACT-GGGGATGAAGCTGTA---------------TCT-----------------------------------GG------------GGGGTCCAGTTG----------ATAAGGGGAACACCCAGAAACATGACCCAG-------AGTGGGAGCAACTGGCACTTGTATAAA--TCTAACTACT- s rn2.chr14 78658994 913 + 107821284 --aactggctctgtgagcagtgatacagtcatacagtggaattgtttcaacaatgagcttgaacaaagttagctatgtgtggcaatatgaaaaaaatctc---------ataatgagccaaagaggtgagatgccagagattgcatctgtatgattctgttgctacaaaacaggaaaacaggaaaaTGCTGGAATGGGTGAAGAACTGGGTGGTGAAGATT----------ACAAGAACACGAGAGTCACCAAAGCCAGGGCTGCGGAG--GGGAGGG---------------------------CTGTGACAGGGAATGTCTGTGGGTTCGATATGGCTCCTCGGCAACCGTAGACAC------------CCTTTGCAATTCGGCCCCCTGCACATTTA-----TATTCACATTTCTCTG---CATTTTATTTCACAGGAAATGGAGAAGGAAAGGAGT-TGCCTGAGCT--------CTCAG-GCAGTGCAAGGA------------------------CAGCTGCCAGGAAGCC--AAATGCC------------------TGTGTAG------AGATGAGTCAGAGGTCTGCCCTG--CCTCTCCAGTCTCCCTCCAGGGAGA--GACAGGAAAGTGGTTTGAAGGGGATCACCACCTGCACATACTTTTGTGGT--TCAGTGTTGT------GGCACTGGCA-AAGGCCACTGCCC--CTTCTCCAAGAAAAGGAGGTTTCCT--TAAGGACTCCATAGCC--GAAGTCTTAACCAGGTGGAGGGAACAGAAGGTGCAGGTGGATGCTTG---CAGGATG-GTTCAAGGGGTTCAGTGAGGTTCATATCTGTG----------------------------------TTGGTTCAGGTCCTA-------------------------GATCTACTCTGT--------GGGCCCTTGCATTGTCTAGTCA-TCCCCCCAGGACTTGTATC-------AAAGCCTCTTCTCTATTAGGTT-------------------------------------GACCTGTATT-GGGAATGAAGCTGTG---------------TCT----------------------------GGGGGGAGG------------GGGGTCTGGTTG----------ATAAGGTGCACACCCAGAAACACGACCCAG-------AGTGGGAGCAACTGGCCCTTGTCTAAGTCTCTAACTACC- a score=45008.000000 s hg15.chr4_random 685967 575 + 1219494 --------------TCTTTTCACAATACAAATCTTTATTAA------------CTGAAGGCAC---GGGGCTCACCACAATCCTTCGGATGGAACCACAGGAAGAGAAGAAGCATGTTTCACCCTGGGC-------TGGGGGTGCTTCCCAAAGCCACTGGGGCCCTTTTCCCAAGCCCCAGAACTGAGCCCACC--TGAACTCATCTTGAAGGtaggtatgtcagtgagtcctcccaaagcctcagtttccctatctataaaatgaggaagcaggactgcccctagggcaag---gcctAGGCCTCCTGCCAGCC----------------CACCCTCACAGACCCAGAGGGCAACGCAGGGTGAGGCGGGGCAGTTTCACTCCCCAGTGCTGTGGCCCCCTTGGTTGAGTGAAAGCACCTCCAGAGCCCTAACCCTAGCCCTGGGAGCCAGGCAAG-------AGACCCCCACAACGACCATCAGAGGTCGTGAGGGGtggcagggagcctggcagggagccaggcagggGCCAGGGTCTaggctcagagcagtgaaggatagatagggtcacatgccagttagtggcagaggtgggacttgaacccaggcctctgtgagacttggttctctcacct s mm3.chr5 116881217 518 - 149719773 CAATAAATGAAAACCCTTTTACCAACAAAAATCTAGAAAAAAAGGAAAACAATCTCAGAGAAC--AAAGGCTCTCCACA--CTTTCAGAT-------CAGGAAACATAAAACTGTGTTCCTCCCTGGGCCTTGACCTAAGGATGCCTCCC-ATGCTACC----TCCTTTCCTCAGACTCCA-AACTGAAGCCTTTTATGAACACATTATAATGGCAgacaagtcagggaacccgctctgggcttcagtttctcttgctgt------agaaagaagggct----------tAAGTTTACCTGGAGCTTCTGTTGCCC----------------CAAACACTGAGGTCCAGAAGGCA-------------------AATTTGCTCCCCCAGAGCTATGG-CTCTTGGGGTGGGTGAGGGTACCT---GGG----------AGCTAAGGGAGATAAGCAGAGCTGACCAGATACCC-CAATGACTA-----------GAGAAGTGTCAGGAAG------------CCAGGAAGGAGTC------TCTATTcagagcagtg-agcagtgatgggttcacaagacagtaagtagcaaagctgagactcaaactcaggctt--------ctcaggtctctcaCGT s rn2.chr14 78659989 532 + 107821284 CAATATATGAAAATCCTTTTACCAATAAAAAAATCTAAAAAGAGGGAAACAATCTCAAAGAGCAAAAAGGTTCTCCACA--CTTCCAGAC-------CAGGAAACATAGAACCATGTTCCTCCCTGGGCCTTGACTCCAGGATGCTTC----------------TCTTTGCTCAGATTCCA-AACAGAAGCCATCTATGACCACATCATAAAAGCAGAAAAGTCAGGGAACCCTCTCGGGGCTTCAGTTTCTCTCTCAGT-CCCTCAGAAGTAAGG-------------CAGG---ACCTCAAGCTCCTGTTGCCCACCCCAAACCCTGCCTCACACACTGGGATCCAAAAGGCA-------------------AATTTGCTCCCCCACAGCTATGG-CTCTTGGGGTGGCTGAGGGCACCT---GAG----------AGCTATGGGAGGTTAGCAGAGCTGACCAGATACCCACAATGATTA-----------GTGGAGTGTCAGGGAG------------CCAGACTGGAGCCATAGTTTCAACTCGGAGCAGCGAAGCAGTGATGGATtcacatgaccgtaagtagcaaagctgagactcaaactcaggctt--------ctccagtctctcaCTT a score=31543.000000 s hg15.chr4_random 686542 540 + 1219494 gtaaaatgggtctactagcagctgcttctccaagcaaatgatgtcaagcacccagctcggcacctca-----cagatgtggtcagtaaatggtaatcccaACCCTACCCTTATATGTGGACTAGAACACTTATGGCAAGTCTCGGGAGGTCATGGGAACTCCTCATGGCTCCTTCTTCATGCTGGAGGACCACGGCCTG-----CCCCATCCCACCCCAACACACTCTTGAAACTGAGGCCCTCGGCCTAGAGCAGCTCACACAGACGTGGACAGCTGTGCTAGCAGGTGCAGAGTCTGGGAGG------CGAGGCTGGACCAGGGCCCCAGCTGGGCTTCGGGTAACCACAGGCC--TCAACTGTCCAGTTGGCCAGAGGGACCTATCACCTGGCTCTGGGCCCCAGGATGCTTTAGCCACTTGAGC------CGGCTCCAGGTGACCGTGTAAG-TGACATAAAGCAAAGGTGTCCTGGACTGCACCACTCACTAGC-TCAGCACCCCAGGCACCAGGCTGGAAACCACATCTCGCACCCAATTCTCCATTTAAAAATTTTACA s mm3.chr5 116881735 426 - 149719773 -AAAAATGGGTCTA----------CTTCT----------------------CCAGCTCAGCAACACAAATGCCCGAAGTGTTCAATACATAGTAACCACCACAC------------------------------------------------TGTGAATTCCTC----------TTTCATGCTGTAGGACCAAGGGCAGGACTCTCCCATCACCCCTGTACACAATCTTACAAATAAGGCCCTGGAC------CAGCT--CAAAGAGGTAGACAGCTGTGGCAGCTGGTCCGGAATATAAGAGATAAGAACAAGGCTGTATGAAACCCCTAAGTAGGCCTTGAACACCCAC-------------GTTTAGTCTGCCTGAAGGATCCATCACATGGCTCTGACCCAAAGAATCCTTAAATCTTCTACCCCTGGGCTTGAAACACATTAGCCAATGAGCTGCTCTCCACAGCAGGTGTTCTG--CAGGACTGTGCACACTCAGCAGACTCCTAGGCACGGGAT----------------CATCCACTTCT----------GTTTTACA s rn2.chr14 78660715 413 + 107821284 -aaaaaTGGGTCTA----------TTTCT----------------------CCAGCTCAGTAACATAAATGCCTGAAGTGTTCACTACACAGTAACCACCACAC------------------------------------------------TAGGAGTTCCTC----------TCTCATGGTGTAGGACCAAGGACTGGACTCTTCCATCACCCCTGTGCACAATCTTGCAAATAAGGCCCTCGACTTGAGTCGGTT--CACAGAGATGGACAGCTGTACCAGCTGGTCC--------AGAGGTAAGA-CAAGGCTGTGTGAAACCCCTAGGTGGGCCTTGAAC-CTCACAGTTTAGTCAACTGTTTAGTCAGCCTGAAGGATCCA-------GCTCTGACCCAAAGAATCCTTAA-TCTTCTAGCC------TTGAAACACATCAGCCTCTGAGCTGGTCTCCAAAGCAGGAGATCTG--CAGCACCGTGCACACTC-GCAGACTCCTAGGCACGGGA-----------------------CTTCT----------ATTTTGTA a score=38640.000000 s hg15.chr4_random 687397 446 + 1219494 TTTTACAGGAAGAGAAACTATGGCCACAGTGGGGAGTGGCATGACTCCCTAAGCAAGTTCAGGTCAGACAGGGCAAAGAATTCTGACTGCAGGGAGGAGGAA-TGGCTGGTTTTCCAGAGATAGATCAGAACAACAGAAGCTCCCTGTGCTCCAGCCTCGGCTGTGGTGCACTGACCTCTCACCCCAGGCAGGCTGAAGAGGAAACCCCTGCAGAGGTGGCCTTGGACACCTGGTTCCTGGAAGCAGCTGGCTGCCGTCATCTGCAGGGCCTGCAGTTCCACCGCACCCTATGGCCCCCTGGGGTCACAGCCTCCCACATCCGCTAACCAGCCTCATCACTTGTTTCC------------------------GC-CAGCAAACCACAGGTCCCCAGAACACACCCAGGGGAAGGGGGCTGCAGGACCTTCTCCCCCAG--------TCAGTCACTGTCAGTGGGCCCAAGTGCTGACCTC s mm3.chr5 116882161 409 - 149719773 TTTTACAGAAATGGACACTGTGGCCAT---------TTCCATGACCCCAGTCCCTGGTTTAGTCTAGGAAGGGAGGAAAA--------------------AA-TGATTGCCCCTCAAGGGATTGTTCAAAATACCAAAAGTTTCATATACCCTAAACTTGTCCCTGGCATCCTGATTCTTCTCCC-TGGTAGGCTGAT-AAGAAACATCTGCAGAGA------TGAAC-TCTGGTTCCTGGAAGCAGATGGCCACTGGAATC--CAATGTCTGTCATT-CACTACACCCCATGATGCCTGGGGGACAGAGCCTCCCACATTGACAAATTTGA---------TGCTTCCAAAATACAGGAATTG----GTGGAACATCGCAAACCAAAGCTCCCCTTACTA---------------GACAGCAGTCCCTGGCTACTGAGCACAA-CTCCAATTTTTGCTCTAGGTTCTATGTAAACACCTC s rn2.chr14 78661128 414 + 107821284 TTTTACAGAAATGGACACTG--GCCAT---------TTCCATGGACCCAGTCCCTGGTTGAGTTTAGAAAGGGAGGAAAA--------------------AAATGATTGGCCCCCGAGGGATTGTTCAAAACAGCAAAAGTTCCATATGCCCTAAACCTGACCATGGCATCCTGATCCCTCTCCCACAGTAGGCTGAA-AGGAAACATCTGCAGAGA------TGGACATCTGGTTCCTGGAAACAGATGCCCAGTGGAATC--CAATGTCTGTCATT-CACTGCACCCTGTGATGCCAGGGGGACATAGCCTCCCACATTCACAAATTTGA---------AGCTTCCAAAATACAGGAGTTGTGGAGGGGGGC-TCCCAAACAAAAGCCCCTCTTACTA---------------GACAGCAGTCCCTGGCTACTGAGCACAAGCCCCAGTCCTTGCTCTAGGTTCTATGTAAACGCCTC a score=126447.000000 s hg15.chr4_random 687843 1537 + 1219494 AGT-----TTAGG---------------TTTCCCTGACATAAGGTGCTAAGAAAAATCACAAGGATTCTAGGGTCCCTGCCAGCCCCTACCTCC--CTGAGTCTGTTT---CATTAAAAATCCAGCCTGGAAGG-TGTGCCAGGGAGAGTGACCTGCTGGAACTCCATGGCAGAAAGTAAGGGGATGGATTGGGGCTGGGCCTGAGCCAGGTATTGCCTGGAAGACTT--GGGCATCTGGGTACCACCGTCCCTACGCACCCTTGGCCTGCTTAGGGTCCACTGTTCCCATCCCATCGTAGCTGTTACTTCCTCCAAAAAATCTTCCGGGAGCCCCCAGTCCCTGCACACCCAGCTG--CCCTGGACACTGTGCCGTAAGCACCTCATACCCAGCT-----GTCCCCAGACTGGGCTGTGAACTCAGCCAGGCCAGAGGCCCCTGTCTGGAATGGGACCAGGCATGCAGGAGGTACCCAATAACTGCTCGCTAATGCAGGGAATGAAGCAGCTGTAGCTGCAGGGCCTTCTAGCTCTGTAGCCCGCTCAGTGTATGCAAGTTCTGGAACGGGGACAGCCACTCAGGAGGTACCCAGTAACCAGGCACTAATGCAGGGAATGAAGCAGCTGTAGCTGCAGGGCCTTCTAGCTCTGCAGCAGCACTGCCCTGGCCTGACCTGAGGcagcagaactggtgagtggggt-------gtgggctcccagcccagactg-----cccaagtttgggtcctgatctgttactc-gctgtgcaccctggggaagtcactcaGTGACCTGCACCCTGGAAGACAAGACAACCAACTGTTGGGGTT--CCCGGGTACTGCTGCGGTCACCACTTAGACATCAGCATGGGCACCCAGTA-AGCTGGTAATCCCCTCCTTCCCAATCAAGCCCCAGCCACC-AAGGCAAAGCTCACTGCTGCTTTATTG-GAGGCAACAGCCCCTACTGGAG----CCTGTGTCTTAGCGTTCCTGGGGGTCCCAGGGCCAGCCCCGGCCCCCACCCAGCTGCCCTGGCCCTGCCTGGCTCCCAGCCCACTTAGGGGTGAGTGTGATGGGGGGACCAGTGTTCCTGTCCTTGGAGCCCAGGCACAGCTTGG-------TCCTGGGTTTCTGGGAT-TGGGACAGGGCAAGTTAGTGTGGGGCAACAGAGTCCCTTCGTCCTCTGGAGCCTGGCGCCTGGTTCAGCCCTAGAACCCAACCTGCTGGATGAGACTGGCTGGGTCCTACGAGATGTC-CATCACAGAGGCCCTA-GGCAAGCACAGCCTTGCTCCTGCTCACCCTCCCATGTGGGCCCATGTCCGTCTGTGTGGCCTGGGGTCAGGGCCCCTGTGACTGCCTTGGCCTGGCAGCCACATGGACTG-CCATCACCTAGGCCCAGTGTAGCCGTAGGGGTGCCGCAGCAGCAGGCTCTGGTGGCTGGGCAGCACGTGGGTGTGGTAGTGCTCCACCATGCTGCCCACACTCACAAACAGGACCTCGCCCTCCAGGTAGAACTTAGAGTCCTGTGGGGGAAGAGAAGGGGGAGCGTCAGCAGggccaggccactctgcggctctaggc----------------------ctcag s mm3.chr5 116882778 1340 - 149719773 aAT-----TTAAAAAGAAA-----CTTTATTTTCTAACATAAAGTGCAATG--AAATCA-GATAGTGCCAAGGTCTCTGGCTGCCCTGACCTCCAAATGAATTTATTTTCACAGAAAAAGTCCAGTCTAGACGGCTGTGCCAGGG-GTGTGGCCT---------------------------GGACCAATTGGG------------------ATCACC-AAACTACTTGGGGGTACGTGGATGCCACTGTCCCCACCCATCCTTGGCCTG---------------TCCCACTTCACTCTGGCCAGGTCAT-CTGTAAGAAGTCTTACTGGAACCTCC---CC--GACCTCCCACCCCTTCCCTGCCC------CCACACACACTGGATTCCAAGCTCCCAGATCCCCCA-------TGTGGCTTC--CCAGACCACAGCACCT-----------------------CCAGCAGCACCTGATA----CTCACTGAC-----------------------------------CTGCTCTAGAGTAAGCTTGAC-----CAAG--CTGGACTAGGG---GCTGCTCA-----CAGCCAGCAACCA-GCCCCAGTACCAGG----------------------------CCAGTTACATAGTCGCTC-----------------------AATAATTGCTAATTGGGGCTTTCAAATTGAGGCTCCAGCCAAGATTGACAGATCCAGG--TGGATCCTGATCCATTATTTAGCTATCTCTTCCAGTGAGGTCACTCAGCAGCCTGTGCCCTG-AACACTAAA-GACCACACATTAGGGCTGCTCTCAGTA-------GCTCTCTACCTGGACATTGGT---GGTGCTCAGTAGAGCCTGCTACCCACTCTGTGCCAATCAAACCCTGGTCATT-GAGACAAAGGTCATCTCTGATTTATTGAGAGGCAATGGTCCCTCCTAGAGCATTCCTATGTCTTAGCATTCCTATGGGTCCTAGGACAAGGCTT----------CAAGTAACCCAGCCTTGCTTGG-TCCCAGCCCACTACAGAGTAGGTATGCTATAGCGACCTGATCATGTGCCCTCGAAGCCCAGGCAGCACTTAGTCACCAGACCTGGGTTCTTGAGAGATGGGTCATGGAATGGCTGGATGGGCCAAGTCATCCAGCCACTCCTTTAGTAGTTGTGGCCTGCTCCAGC--TGGAACCCAGCCTGCTCACTGCGGCT--------------AGGTGTCATGTCGATGAGGTCTGATGTCAAGCCCA------TTCCTGTTCATCTTCCCATGCA-GCTGGTCTCCATCTTTGTGGC---AGAGCTGTGGCTCCGGGGCTGCTTCCACCCAACAGCTGTGTGGAATGGATGTCACCTGGGCCCAGCGTAGCCGTATGGGTGCCGCAGCAACAGGCTCTGATGGCTGGGCAGCACATGGGTGTGGTAGTGCTCCACCATGCTGCCCACACTGGCAAACAGAACCTCACCTTCCAGGTAGAACTTAGAATCCTGC--AGGAAGAAAGGAAGCAGGTCCAGCAGGGACTGAGTAACCCACTGCCTAGATC--------CCCTCACCTCTTCCCCCAG s rn2.chr14 78661763 1291 + 107821284 aataCAAATTAAAAAAAAAACCAACCTTCTTCTCCAACATAAAGTGCAATG-------------GTGCCAAGGTCTCTGCCGGCCCTGACATCCAGATGCGTTTATTTTCACAGAAAAAGCCCAGTCTAAACAGCTGTGCCAGGG-GTGTGGCCT---------------------------GGACCAACTGGG------------------ATTACCCAAACTACTTGGGGGTATGTGGATGCCACTAGCCCCACCTTTCCTTGGCCTG---------------TCCCACTTCACTCTCGTCAGCACTT-CAGGAAGAAGTGTAACTGGAACCTTC---CCCTGACCCCCGACCCA----------------CCAACCCCACTGGATTCTAAGCTCCTGGATCCC-----------------------AGAATACAGCACCT-----------------------CCAGCGGCAGC--AT-----CTCATAGAG------------------------------------TGCTCTAGACTAAGCTTGGC-----CAGG--CTGGACTAGGG---GCTGCTTA-----CAGCCGGCAACCA-GCTCCAGCACCAGG----------------------------CCAGTCACATAGGTGGTT-----------------------AATAACTGCTAACTGGGCCTTTCAAGGTCAGGCTCCAGGCAAGACTGAGAGATCCAGG--TGGATCC--------------------------AGTTAGCTCCCTCAGCAGCCTGTGCCCTGGAAGACTAAA-GACCACCCATTAGGGCTGCCTCTGGTA-------GCTCTCTACCTGGACACTGGT---GGTGCTCAGTAGAGCCTGCTGCCTGCTCTGTGCCAATCAAGCCCTGGTCATTTGAGACAAAGGTCATCTCTGATTTATAGAGAGGCAATGGCCCCTCCTTGAGCATTCCTATGTCTTAGCATTCCTATGGGTCCCGGGACAAGGCTTAGGTACCATTCAACTAACCCAGCCTTGCTTGG-TCCCAGCCCACTCCAGAGTGGGCATGTAATAGAGACTAGCTCTTGTGCCATCAAAACCCAGGCAGCACTTAG-CACCAGACCTGGGTTCTTGAGAGGTGGGCCGTGGAGGGGCTGGATGGGTCAAGTCATCCA-CCAGTCCTTTAGT---TGTGGCCTGCTCCAGC-CTGGAACCCAGCCTGCTCACTGAGGCT--------------AGGTGTC--------------TGACATCAAGGCCA------CTCCTGTTCATCTTCCCATGCAAGCCGGTCTCCATCTATGTGGC---AGGGCTGTGGCCCTGTGGATGCTTCCACCCAACAGCTGTGTGAAATG-ATGTCACCTGGGCCCAGCGTAGCCGTACGGGTGCCGCAGCAACAGGCTCTGGTGGCTAGGCAGCACGTGGGTGTGGTAGTGCTCCACCATGCTGCCCACACTTGCAAACAGAACCTCACCTTCCAGGTAGAACTTAGAATCCTGC--AGGAAGAGAGGAAGCGGGTTCAGCAGGGACTGAGTGGCCCACTGTCTCAAGCCTATGTCTCCCTCACCTCTTCCCTCGG a score=17635.000000 s hg15.chr4_random 689380 190 + 1219494 tctccccgtctgtaaaacaaggCAG-CAGCATCAACAGCGGC----ATCACCAGGCTGGCCCCTGGCTGTCGGTGGTGCCCCCAAGGTGGCCTCCGCA--TCAGGCCTGTGCTCTCCATGTTCCCACCTCACTTCCCCTCCGTCCTCCATGTCCAGGAGCC--TGCACCCAGA---GCACTTCAGACAAGGTCAGGAAATGA s mm3.chr5 116884316 197 - 149719773 TCCCCCAGCTTTTTAAAGGGAAAGGTCAGCAGTAACGATGGCACTGATAGTCAGGCTTGCTGCTAGCTGCCCATGTTCCCTCCCTGTCTGTCCACACACATCAGGCCTGTGTCCTTGAGGTTTTCAGTTAGTACCCTCTC--TCCTTAGCCTCAAGGGTCCAATGTG---AGAACTGCTCTCAGGGCAGGGTCTGTGAATAA s rn2.chr14 78663072 198 + 107821284 TCCCTCGGCTTCTCAAAGGGGAAGGTCAGCAGTGACAATGGCACTGATAGTCAGGCTCGCTCCCAGCTGCCCATGTTCCCTCCCTGTCTGTCCACACACGTCAGGACTGGGTTCTTGAGGTCTCCTGTCAGTAGC--CTC--TCATTAGCCTCAAGGGCCCAGTGTGAGAAGAACTGCTCTCAGGGCAAGATCTGGGAATAA a score=216331.000000 s hg15.chr4_random 689720 2238 + 1219494 CCCAGGGTCTATGGCTGACCGCCCATCCCCACTAGGGTCAGTGGAGGACAAAGGTAGGCCACgagaggagggaggctgagc------aggaggggtggggggtgagcgatggtggaggggaaggggagggC-GGTATCCTGGAGGTGCCAGTCTCAGTCTACCCGCTGCCTATGCCTCATCAGGGAGATTCTGCCCTGCCCCTTGCCAGGCCATGCGGCCAGGGTCCCCGTCCCA--CTCAGAGC-----CC----TCTCACCTTCTCAAAAATGCGATAGTTCCTCACTTTGTTAGAGGTTTCGTCCCACACAACCAGGACCTAC-AGGACGGAAGCGGGAGGCTGACGGCTCCCTGAGAAACAGCGGGACCAGCCTCGGGAGACCATGGGCTGGGGATAGGGGGGCAGAACCATCA-AGGCTGGGTCCTGTGGCCCT-----------CGGGGGGCGGGGAGG---GACTCCAG-----ACCACCTGCACAAGGACAGC----------GG-GGGCGACACTGGCAGCCCTCAGAGAGCCTC--TGATGAGCAACAGCTCATAACCACCAATAACCACTCCGACACACCCGGGAGAGC-------ATGGCTCAGTGAGGTCACAACTTCACGCTCGGAGGGACACGGGCAGACCTGGCGTTCCCCTGCCCCATGTGGCC----TCCGCCACCCCAGAGCATGAGCCCTACCCCA---CCCGAGTCCTGGCCCCCACTGGGAGGTGGCCATCATGGCCCCCAATTTGCAGA-----TGGAGATCTATTAGGGAATAGATTG--------------GGGGGTGCTGCTGGGAAGAGAATTCAGCTGAGACACCAAGTAAGAGTCCACAAGGGGAGTGGTTTAGGAACTGTGGAGTCCTGGGCCCACCCACAGCCTGGGTGTGTGGAGAGCCAGAGGGGCCCTGGGGCATCTTCCCCTGGCG-CCTACCTTCCCCGACTTGGTAGAGGAGTTCCGGATGCAGTAGAGTCCATCCTGGGGCTCTCCCCGGGGGCTTGTAGCCTTGAACAACCTAAAATAAGACAGTCATATTAGCGGGTGAGTCCTCCTCGGGCAGCTTTCACACGG---ACCTTCCCGCCCCGCTCCCAAGCCTGGCTTTCTGTCCTCTCGCTGTTGTAGGTCTCAGGAGCTGAGCACGTCGGGCTGCCGTGAGGCTGACAGAAGCAGCCCAGCAGAGCCCTGGCCAGCCAGGGTGCCAGCTGGGCATGGGACAGAGCAGGG--AGGTCCACTCCTCTGG---TTTCTGCTGCACGCAGGGCC--------ATGAACTTGTGCCAGCAACTCCCCAACACGGAAGCTAGTGAGAGGGACACAGAAGCAGGAAGCCGGGCATGGCGGAGGACCCAGCACACACAGGGCTTTGTGCTGACCTTTCCACTTCGCAGGACTCCGTGGTGTTGACGAAGACCGAGTTGGGCAGTGGCACCTGCAAGAGGCTGACGGTGTCAGTGCCAACGTCGGAGTGATCC--ACCCGCACCACCACTCCCC-GGACGGTGGCCACCCGGTGCCGGGATCCGGGGCTTTACATGGTGCTGTGTCCCCCT-AGGCTCCCGGGTTCTCGGGGGGTCCTTGCTCAGGACGGTCTGTGAGGGGCCGCCCTGGCCTATGGCTTTCCCACCACCTGTCCACCTACTGGCCACTGGGACCCAGGCTTGCCGCTCAGCCTTGCCTTCTCATAGTCCTCGTCCGAGTCGTCCCCGCCAGTGTCAGCCTGTGAGGGTTGCCGGGGCTTTTCAAAGGAGAAGCTCCTGAAACTCTGCCCATCGGGGGGTGATCGCCTGGAGGGGCAGGGAGAGGAAGGCAGGACCATT-TCACTGTCAGACACGGGGCGGCCACCCTCTGCTCCCCTCCCCACTCCACCC-TCTGTGTGAGGACGGCAAGCTGCCTGCTATGGCCCCTGTGACCCTAAAAAGCTCAGGACAACAGAGATCCGGGTAGGGCTCGTGCCGACTGCCCTGGGACAGCA--GGAATCG-------CCCGACA-CCGGAGTCAGGGGTCAGGGCTGCCATGGATGCTGGCAAG--GGAGTCCAGGGTTCCCAAGCTCA-GTGTCATCACACCGTCAACAAGTGCTCTGGATGCT-CGTGGGGAGGGGAG------------GTCC----GGTCATGGCCAAATCACAGCCCACTCAGAGCCACAGGGGAGTGGACGTGAACTGGA------TGAACAATGCAGTGTGACCCCAAAGGACGCCCATGGCGTCCCTGCACGCCTCCCTGTGTGGCTAGC---CGGTCCTGCTCAGCAAAGCCTCAAAGGCTCTAGGGAGGATTAACGG--GCCACGCCAGC-ATGGGAGGCCAGCCTGTGG s mm3.chr5 116884515 2076 - 149719773 CCAAGGG--------CGGCTACCCAGTACTTCTAGAGTAAGCTAATGATAAAGCAAGGTTAGGAGAGGAAGAAGGCTGAGACCATGGAGAAGAGACGGAGGGCAA----------AGGACAAGGGGAGGGCTAATGTTAAGGAGGGACCAGTC-CAGTTT-CCCACTG-----------TCAGGGGGACTCG--CTTAGCTCTGGCTAAGCCTTGAAGCCAGTATCCCTACCCCACCCTCAGAGC-----CCAGTTTCCCACCTTTTCAAAGATGCGATAATTCCTCACTTTGTTAGAAGATTCATCCCACACGACCAAAACCTACAAGGAGGGAAATATGGGGCAGGGGCCTTAAAG-GAGGCAGTAGGACTGGTC-------AGCAAAGCCTGAG----GGGGATAGCAACAATTATGGGCCAAATGCTATAGCTCT-----------CAGGGATAATGGAAGCTACGTTCTAGCTACAGTCGCCTGTACAGAGATAGCCCCTCACCCTGAAGGTCATCCCT--CTGCCCTTAGAAAGCCTC--TGATGCAAAGTAG-TGGGAACCAT---------CTCTCACATGAGTGAGGTAGGTGAGGTACTGGGTTAATGGATGCTCACCCTCTTGCT-----------------AC------TTCCACTGCTCCACACGACCCCCCTCC-CTCTCCCTCTGCACAAACCCCATTCTAATTCACACTGCATGGCTCCAGT-GGAAGGCAGCCATATTTTCTCCCAACTTACAGAAATCTTTGAGTTCCG-----------------------------GGCAAGGGTCCTAAAGCAAGAGTTCAGTTAAGGTGCCAAGTTAGAGGACAGAAG-----------------------------------------GCTTTGGTGG---------CACAGCTATCCCTTAGCA---------GCTGTCCTACCTTCCCTGACTTGGTAGAGGAGTTCCGAATGCAATACAGCCCATCCTGAGGCTCTCCACGGGGGTCCGTAGCTTTGAACAACCTAAAATAAAATGGCCATGTTGGTGGGCGAA-CCTCCCCAGACAGGCTTCATAAGATGTACCTGCCAGCCCCACTCCACCACTGGGTTCTCTGGCCACTCTTGGTTTTCGGTT---GTAATAGAG-----------GCTATAAAGCGGGAGGAGG-GGCTTA-----------------------------TGAGAATAAAAAAAACCCGATTCAGACCCACTGCTATCAT--TTCCTGCTGTGCTAAGGCCC---------------------AGGTCTTACCCAACACCAAAGTGAAAAAGGGAGACA-------AGGGGCCTCAC--TGTCACAG---CAAGTACAAGAAGCACA-------AACCTTTCCACCTCGCAGGACTCTGTCGTGTTGACAAACACCGAGTTAGGCAGCGGCACCTGAAAGAGGCCAACAGTGTCACTGTCAAGGTATGAGTGACCCCTGCTCACATCACTGCTGTCCTAGCTGGCTGCCACCT-GCATCAGGATCCAGGGCTTTGCCTGGTGTCCCGCCCCACTCAAGCCC---AGTTAT--GGAGCCCTTTGTGGAGGAGGGCCAGTGAGGG---CCCCCGGCCTACAGCTCTCCCG-TGTCTGCCCATTTGCCAACTG-TGGAACCAGGGCCCTCCACTCAGTCTTACCTTCTCATAGTCTTCATCTGAGTCCTCCTCGCCAGTGTCAGCCTGTGAGGGCTGGCGGGCCTTTTCAAAGGAGAAGCCCCTGAAACTCTGTCCATCAGGGGGGGATCGCCTGGAGTGATA--AAGAGGAAGACAAGAATATTAGCATTCTTGGACATAGATAGGTCGCCGCTCCCTTCCCTCCA-----------TCAGAACCCTGGTGCCA----GATTTCTCAGGCCCCTGTGGCTGT-AATTGCTCAGGACAGCAAAGCTCCG----AGACCCTTGCTCACTGCCCAAAGGAGACAGAAGAGTTATCTTAGTCCTGACAGCCTAACTACAAAATCAGGACTGTCATTAATACTGGTAAGCAGGGGTGCTGGTCACCTGAACTCAGGTATTGTCATATAGTGGACAAATGCACTGAGCACTGCCTGGGCCCAAGATCTACTGTTGATTGTCTGTGAGACTATGGCAAAGCCACAGCTCTCTTAAAGCTACAAGGTGGTGGAC--AAACTGGGGGAGGCTGAACAATGCAATCTGACTACAAAGGACACCTATG--GTAAGAGTCCAGCTTACTGCACAAGTAGCAGGCAGTCCTCTTAAGCCCAGTCTCCAAGCCCTTAGGGAGAATTAAAAGAAGTCACGCATGCTCTGAGATACAAACCTATAG s rn2.chr14 78663388 2095 + 107821284 CCAAGGG--------TGGTTACCCAGTACTTCTAGAGGAAG-TAATGACAAAACAAGGTTAGAAGATGATGGAGTATGAGGCCATGGAGAAGAGACGGAGGGCAA----------AGGACA-GGGGAGGGCTGATGGTATGGAGGGACCAGTC-TAGTTT-CCCACTGCCGAATCCT-GTCAGGGGCACTCG--TTTGACTCTTGCTAAGCCTTGAAGCCAGGGTCCCTACCCCATCCTCAGAGCAGGGCCCAGTTTCTCACCTTCTCAAAGATGCGATAATTCCTCACTTTGTTTGAAGATTCATCCCACACGACCAAGACCTAGGAGGAGGGAAATATGGGGTGGGAGGCTTAGAG-GAGGCTG-AGGACTGGCC-------ACCAAAGCCTGGA----GTGGGGAGTAGCAATTATGGGCTAGACGCTGCAGCTTGGGGGCTGGGGGTGGGGGTAACGTAGACTACATTCCAGCTACAAACACCTGTACAGAGATAGCCCCTCACCCTGA-GGCCATCCCT--CTGCCCTTAGAGAGCCCCCCTGACGCTAAGCAG-TGGGA-CCAT---------CTCTCACACGAGTGAGGTGTG---------GTGTTAATGGATATGCAACCTCT------------------------------------GCCCTACACGGTC----TCC-CTATGCCTCTGCACAAACCCCACCCTAATTCGCACTCTATGGCTCCAGTTGGAAGGCAGCCACATTCACACCCAATTTACAGAAGTCATTGAGTTCTG----AGAACAGAGAGAAAATGTGCCACTGGGCAAGGACCCCTAAGAAAGAATTCAGTTAAGGTGCCAAGTAAGAGGACAGAGG-----------------------------------------GCTCTAGTGG---------CACAGTGGTACTTAGGCA---------GCCGTCCTACCTTCCCTGACTTGGTAGAGGAGTTCCGAATACAATACAGCCCATCCTGAGGCTCTCCGAGAGGGTTTGTGGCTTTGAACAACCTAAAACAAAACGGCCATGTCAATGGGCGAA-CCTCCCCAGACAGCTTTCATAAGGGGTACCCACTAGACCCACTCCACTACTGGGCTCTCTTCCCACTCTTGGTTGTCAGTT---GTAACAGAG-----------GGTATAACCCTAGAGG-----GCTTG-----------------------------TAAGAATAAAAAGG--CCAATCCAGACCCACTGCTATCATATTTCCTGCCGTGCTAAGGCCCCACACAGCACCAAA--GCACTAACACTTGCCTGACAC--AAGTGAGCAAGGGAGACA-------AGGGACCTCACGCTGTCATAG---CAAGTACAAGAAGCACTTTGCACTAACCTTTCCACCTCGCAGGACTCTGTGGTGTTGACAAACACTGAGTTAGGCAGCGGCACCTGTAAGAGGCCAACAGTGTCACTGTCGAAGTATGAGTGACCCCTGCACACATCTCTGCTCCCCTAGCTGGCTGCCACCT-GCCTCAGGATACAAGGCTTTGCATGGTGTCCCGTCCCGCT--------------------------TTGTGCAGGAGAGCTAGCGAGGG---CCCCCAGTCTATAGCTCTCCCA-TGTCTGCCCACTTGCTGACTG-TGGGACCTGGATCCTCCACTCAGTCTTGCCTTCTCATAGTCTTCATCTGAGTCCTCCTCGCCAGTGTCAGCCTGTGAGGGCTGACGGGCCTTTTCAAAGGAGAAGCCCCTGAAACTCTGTCCATCCGGAGGGGATCGCCTGAAACAATA--AAGAGGAAGGCAAGAATATTAGCACTCTCAGACACAGAC--GTCACCCCTTCCTCCCCTCCACACATGACCCTTTGGAATCTTGGTGCCA----GCTTTCTCTGGCCCCTGTGGCCAT-CACTGCTCAGGACAGCGAAACTCGG----AGAACCCTGCTCACTGCCCAAAGGAGGTAAGGGAGTTATTTTAGTCCTGACAGCCCAACTGTAAAATCAGGGCTGCCATTAATACTGGTAAGCAGGGGCACTGGCCACCTGAACTCAGGTATTATCCTATAGTGGACA-------------CTGCCTGGGCCCAAGATCTACTGTTGAT-ATCTGTGAGACTGTGACAAAGTCACAGCTCTCTTAAAGCTACAAGGAGGTGGAC--AGATTGGGGGACGCTGAACAATGTAATCTGACCACAAAGGACACCTACG--GTAAGAGCCCAGCCCTCTGCACAGGTAGCAGGTAGTCCTCTTGAGCCTAGTCTCCAAGTCTTTAAGGGGAATTAAAGGAAGCCACACGTGCTCTGAGACACAAATGTGTAT a score=241422.000000 s hg15.chr4_random 692765 2484 + 1219494 CTAAGAGTGCCAGGGGAGCGAGGTGGGCAGAGTGCCCGTCAGAGGCCAGGCC--AGGGTCCCTGTAGCTGGAGG-CAGGGCTTGCAGCCGCCACACAA-----ACTCACTGGAGGTGCGGGAGCTGCGGCTTCTCTGGCCTGGGCAGGACTGCGGGCCGCGCCATGGCCTCAGGCACTGGCAGCTTCAGCGCAGGAGGCCGGGGAGCCACGGGGGGCACAAAGAGTCCGGGCATGGCTGCCTCCCTTGGGGGGTCCTCTTCAGCTATCTTCAGGAACTTGGGCTTGTTGGCTGGCACAGGTGGGGGCTCAGATGTGGGTGGTCCTCGGGGGGACAGGTGGAAGGACTTGAGTTTGTCACAGTTTCTGGAGGTGGCAGTGGCCATGATGGCAGCACTGGAAGTGGAGCAGGCCCCGTGGCCAGGGGTCCAGGGCTCCGGGCTGGGGCTGGCACTCTCCCGGAAGCAAGGGGGTTTCCGGAGGCCGGGTGCGGTGGGCATGGTGCTCAGAGGGGGATCGCTCATCCTTCGGGGGGTAGCAGGTACCCTGGGGCAAGGCTCAGCCCGCCTCGGGCACAGTGGGTCCCTCTTGGAGTCCTCAGCAGCCAGGCCAACATCTGGGAGGCCGTGCTTAGGGGGCGGGGGTGGCAGTAGGGGACCGGGGCCCTTGGAGGTAAAGGAGTGGGCCCGGGGCATGTCAGAGAAGGCTGGCTTCCTGGGCGTGGGCACTGGGGGTGGTGGGTAAGCCGGTGGGTGCATCAGGGCATCTGCAGAGCAAAG---AGACCCGGGTTGGACCCTGACAGAGACTGGGCCAACACTATCCT----------------------------CTGCT----------------------GGCAGTGGTCAGC--CAGGCCAACCAGGAGTGCAACCCATGGTAGGCCCACCCCACAGCCTGCCCACCCAGCAGCCCAGCACCCAGCACTCCCATCCTGCCTTCCCCAGGGTCCCAGACCACCCACCACCCCCAGCCTTCCCCATTCATCCTCCCTATGGCAGCCTGTGGACGCTTCCTGAAGCCTAGAGGACACCTGAGGAGCCCATCAGGTTCCCAGAGGTGGAAGGAAGAGAAAGGAAGAGAAGTCAAGAAGGATCTCAGGGCTCGGCTGGAGCGAGAGGGAGGACGGAATTCCCAAGGACAGGGGAGGG------------GAGCAGCTGGGAGGAAGGTGAAGGCCCGTGTTTGCTCAGAACATATCCAGAAAGCTGGGAGATGCCAGGGGATGCGGGGTCAGGGAATGTGTGCAGAGTTCAAAAATCCAGGCTGGACATGACTCGGAGCGGGCAGCCTGCAGATGACCCAGGCTGTCACCCAGGGAATTCGGGAGAGGAGTGAGGTCTGAGTCCCGGG-TATCCCTCATGGGGCCAGCACAGGAGCTGAGGAGAAAGAGGACCCTGGGAGCACCGGGGCGCCTGGAGGACGGGCTGGCAAGGAACAGGGCAGGCGCCAGGCTGGTGTGGCTCAGGACTGAGCGCTGGAACTGGGAATGGGGAGGCCACAGGCGTCCTGGACGAGAAATGTCTCGGGGAGAGGATGAAGGGG---GTACAGAG----GGAGGGTGAGTGGAGCAGTAGCATGCAGGAGCACTGGTGGCTCCCCAGGCCCATCTCTAGCCTCACTGGG-----CTGCAGCTCAGGGCTGGGCAGACGGAGTCTGAGTTCACCAAGGCTTGGCCAGCCAGGCTAAGACGGAAGGCAGTAGTGTGTGGGCGAAGGGACAGGCATGGTGAACACTGTGAGACAAGAGCTCTGCATGGAAGGAAACTGAGGCAAGCGGCCCGCAGACCCTGGTGGGCTGAAGGACTGTTGGCACTGGGACCCCAGAGGGAAGGAGGGAGGGAGCGGCAGGAGAAGAGGGGCTGGACCCGGGAGCCTGAAGGTGGGAGGGGATGGGAGGCAGAGAGGATACGGGGTCAGGGGCTGGGGTCAGCAGAGGCCAAGTCAGTGAGAACAGGAGGCTGGAAAACAAGGAGGCAGGGCGGACGCAGGGAAAATGGAAGGATCAAGGATCAGCCCCAGACATGAGGAAATTGACAAGATGAGGGGGCTGGAGAGACAATagggagggaggaagggaggg---agggGACA-----GAGGAGGACAGAGACACGTCCTCCCCACCCAGCTCGTGCTTCC---GTCATCCACGTGTGACCACCTGTATCAGCCTGTCTCTTTGACTAGGCCATGTGCTGCAGGAGGTA-GGTGGACACtgggatgggatggggtggggtgggaCAACGACCTGGCCTGCAGCAGTG-TCCACACA-AGCTGGCAGCCATGGGGACATGGACCTGCCCTGAGCCTGCGCGCTCCTCAGCGTCCTTCCTTCCCCATGCTTAACCCCCAGGGCCACCCCGGCTCCACCTGCCACTTATCGCCATGTGCCTGTCCCTCCTCCTGGGAGGTGGGAGGAGGAAATGAGCAGAGGTGGCAGCAGCTACACCTCTTCTGCTCCAATCCTCATAATACTTGGGACACAGC-AGGGAAGCGGAAGCCACCCAGAGCGGTACCTGGGCC s mm3.chr5 116886661 2152 - 149719773 CTCAGAGTGTAAGGGACAT----TGGACAGAGAGC-------AGACTGGGTTGAAGGAACCTATTGACTGGCAGGCAG-------AGGCACCACCCAAGCCAGACTCACTGGAGGTGAGGAAGAGGTGTGTTCTCTGGTCTAGGCAGCACTGCAGGCCGAACAGTAGCCTCAGGCATGGGCATCTTCTGCACAGGAGGCCTGGGGGCCACAGGGGGCACA---GGTGCAAACTTGGCTGCCTCCCTCGGGGAAGGTTCTTCAGCTATCTTCAGGAACTTGGGCTTATTAGCAGGCACGGGTGGGGGCTCAGATGTGGGTGGCCCTCGGGAAGACAGGTGGAATGACTTGAGTTTGTCACAGTTCCTAGAGGTGGCAACGGCCATGGTGGTAGAGCTGGAGACAGAGCTAGTCCCATGGCCAGGGGTCCAGGGTTCTAGGCCGGGATTCACACTGTCCCGGAAGCAAGGATGTTTCCGGAGGTTGGGCACGGTGGGTACATTGCTCATTGGGGGGTCACTCATCCTCCGAGGGGTGGCAGGCACCCTGAGGCCAGGCTCTACTCGCCTCAGGCCCAATGCGTC---CTTAGCATCCTCAGGGGCAGAGCCAGTGTCTGGAAGGCCTCGCTTAGGAGGTGGGGGTGGCAGTAAGGGACTTGGACTTTTAGAGGTGAACGAGTGGGCACGGGGCAAGTCAGAGAAGGCTGGCTTCCGAGGTACAGGCACAGGGGGTGGTGGGTAGGCTGGTGGATAGGTCAGGGCATCTGCAAGACAAAAAATAAAAGCAAGTTGGCATCACATAGGGGCTGAACCACCACCAT-------------CAGGCAGCAA--------CAGGT----------------------TTCGGCTGCCAGCAGCAGCTCATTCAGTAT-GCATCC---GTCATGTCTCACCCTTGCCCTACCTAAT-----GCCCAATATCTAGC-CCACCACCCAGCTACCCCTGGG--CCTGAGCCACCAATGTTCTCAGGCCCTTCCCATCCATACCCCAGAAGACAGTCCAGATAAGGTTTCTACTGCCTAGATGTTACATGAAGCAGTTTCAAGCCCCCCACAGGTAT----------AAGTAAGCAGAGTTAGTA---TTCCCGGGTCTTCATTTGAGCAAGAGGAAGGGT-GAATTCTGCACAACAGAGGTGAACAGGATGGGCCAGAACCACTGGGCTAAGGATGGAAGCCTGTGCTT---------ATAACAAGCAAAA--------GGCACGGGGTG-----------------------------ACATCCAGTCCAAATGTCACATAGGGCATCAGGACAGTAGGT---CTGGGA---CAAGTGGGAATGGCATGAAAGGAATGAGACCTGAGGCCTGGG-TGTCCCTCA-------GCCACAGG----GAGGATGGGGATGTCCTTCAAGA----GGGAAACACAGCAGACAGAAGAGCAAGAA---------GAGCCAGAATGCCATTAACCCGGA----------GA---AGGAATGAGG------------------------------CCAGTGAGGGGCTGGGAG-----GTCTAGAGGGTAGGAGGAAGAGTGGCGGAG-ATTGTTCAA------TGAAGGCT--GCAGG--------TACCCTCAATGTGCCTACCTACAG-TCAAG--------CACAGAGACGTCACTTTCCCACTCCTTG------GAGCT------------------------------GGGTAGTCAAGTTGAGGAC--TGAGGAAAGAAGTAT---GAATAGGAAATAAAAGACAACAG---------TCTGGT-CGCTGAAGGAGCATCAGCAGAGTTGGCCC--------GAAGGCAGCCAACAA----------------GGACATCAACACCTACAGCTAGCC---------AGACAGAAAGAAGGTGGAA------GGTTGGGTCAGTGGAGGAC--------------------------------------------------GGAAAATAGAAA--TGGGCGATTATCCCAAGACATAATGACA--GACAAGACAA---AGCTGGAGTGTTCTGAGTGGAGGAAGCAGAGAAAGTACAGGGTATAAGGAGGTGAAGGACAGAGACATGGCCTTCTTCACCAGCCCTGGCCTTCCCTGTTACGCGAATATA-GTGTCTGTAC--GCTCATCTGCTCTG-GAGACTGTGTGCCTCAGGGGGTGCAGTGAACACTGAGCCA--------------GAGATGACAGCCTGGCCTAGAGCTATGATCCACAGAGAACTTGTTGCCATGGGCA-GTGGGCCTACCTCAGATCAACCCACCTCCCAGTGTCCCTTCGTTTTCTG--TCGGCCTCCAGGACCACCCCCTCTCTCCTGACCCTCCATCCATACAAGGTTAACTC-------AGGAGGTGGCAGGAGCAAATAAGTAAAGCCAAC----------------CAGCCCTGAGTCTCTGAATACTTGGATCACAGCAAAGGAAACTGAGTCCACCCAGAGCAAGACCCACAAC s rn2.chr14 78665552 2142 + 107821284 CTCAGAATGTAGGGGGTAC----TGGATAGAGAAC-------AGACTGGGTTGAGGGAACCTATTGGCTGGCAG-CAA-------AGGCACGACCCAAGCCAGACTCACTGGAGGTGGGGAAGAGGTGTCTTCTCTGGTCTAGGCAGCACTGCAGGCCGAACGGTAACCTCAGGCATGGACATCTTCTGCACCGGAGGCCTGGGGGCCACAGGGGGCACA---GGTGCAGACTTGGCTGCTTCCCTTGGAGAAGCTTCTTCAACTATCTTCAGGAACTTGGGTTTATTGGCAGGCACAGGTGGGGGCTCAGATGCAGGTGGCCCTCGGGAAGACAGGTGAAATGACTTGAGTTTGTCACAGTTCCTAGAGGTGGTAATGGCCATGGTGGTAGAGCTGGAGACAGAGCTAGTCCCGTGGCCAGGGGTCCAGGGTTCTGGGCCAGGATTCGCACTGTCTCGGAAGCAAGGATGTTTCCGGAGGTTGGGCACAGTGGGTACGTTGCTCACTGGGGGGTCACTCATCCTCCGAGGGGTAGCAGGCACCCTGAGGCTAGGCTCTACTCGCCTCAGGCCCAGGGGGTCCTTCTTAGCATCCTCAGGGGCAGGGCCAGTGTCCATAAGGCCTCGCTTAGGAGGTGGGGGTGGCAGTAAGGGGCTTGGGCTTTTGGAGGTGAAAGAGTGGGCACGGGGCAAGTCAGAGAAGGTTGGCTTCCGAGGTACAGGTACAGGGGGTGGTGGGTAGGCTGGTGGATAGGTCAGGGCATCTGCAGAACAAAAAATAAAAGCAAGTTGGCACCACATAGAGGCTGGACCACCACTATCCTATACTAGCAACAGACAACAAGAACCAACCAGGTATGCACTTCTCATGGCCACACCTTCAGCTGCCGGCCGCAGCTCATTCAATAG-GCATCC---TCCATGCCTCCCCCTTGCCCTACCTAAC-----GCCCAATGACTAGC-CTGCCACCCAGCTTTCCCTGGG--CCCAAGCCACCGCTGCTCCCTGCCACTTCCCAT-----CCCCTGACAACAGTCCATGTAAGGTTTCTACAGCCTAGATGTCACATGAAGAGCTCTTAAGCCTCCCACGAGTAG----------AAGTAAGCAGAGTTGGGA---TTCCCAGGCCTTCACTTGAGCAAGGGGAAGGGT-GAATTCTG---AACAGAGGTGAGCAGCATGGGCCAGAACCCCTGGGGTGAAGATGAAAGCCTGTGTTT---------ATAACGAGCAAAA---------GCATGGTATG-----------------------------ACAT------CAGATGTCATAGGGAGCTCCAGGACAGTAGGT---CCGGGA---CAAGTGGGAATGACGTGAAAGAAATGAGACCTGAGGCCTGGGTTGTCCCTCA-------GTCACAGG----AAGGGTGGGGATAACCCTCAAGA----GGTAAATGCAGAG-----------AAGGA---------GGGTCAGAGGGC-----ATCTGG----------------AAGAATGAGG------------------------------CCAGTGAGGAGTGGGGGAGGTCTGTCTAGAGGGTAGGGGGAAGAGTGGTGTAG-AGCGTTCAA------TGAAGGCT--GCAGG--------TACCCTGAATGTGCCTACCTACAGCTCAAG--------GACAGAGAC--TGCTTTCTCCCTCTCGG------AAGCT------------------------------GGGTAATCAAGTTGAGGAC--TAAGGCAAGAAGTGTG-AGAGTAGGAAATTAAAGCCAGTGG---------TCTGGT-CGCTGAAGGAGCATCAGCAGAGCTGGCCC--------GAAAGCAGTGAACAA----------------GGACACCAACACCTACAGCTAGTC---------AGACGGAAGGA----GGAA-----------GGTCAGTGGAAGAC--------------------------------------------------GGCAAGTAGAAG--ATGGCAATCGTCCCAAGACATAATGACA--GACAAGACAA---AGCTGGAGTGTTCTGAGCAGAGGAAGCCGAGAAAGTATGAGGTATAAGGAGGTGAAGGACAGAGACATGACCTTCCTCCCCAGCCCTGGCCGCCCCTGTCACTCGCAGAGATGTGTCTGTAT--GCTCATCTGT---------CTGTGTGCCTCAGGGGGTGTAGTGAACACTGAGTCA--------------GAGATGACAGCCTGGCCTACAGCTATGATCCACAGAGAACTTGTTGCCATGGGCA-ATGGGCCTGCCTCAGACTAACCCACCTCTCAGTGCCCCTTCGTTTTCAG--TCAGCTTCCAGGACCA-CCCCTCTCTCCTGAACCTCCATCCACACAAGGTTAACTT-------GGGAGATGGCTG----------GTAAAGCCAAC----------------CAGCCCCGAACCTCTGATTACTTGGATCACAGC-AAGGAAACTGAGTCCACACAGAGCAAGACCCACAAC a score=86112.000000 s hg15.chr4_random 695249 721 + 1219494 AGCATCCCCAGCCTGGGAGGGGCTCTGCTCCCGGTCCCAGCCCCTGCTTCCTACACACCCAGAGCTCCCCGGGCCCACCCGCCCCACCTACCCTCAAGCCTTCCGGGCTCCGGGGAGTCAGGCTCCAGGTAGGAGTCATCCTCATCGTCGTGCTCATAGTCTGCATGGGGAGAGGGGGGTGGTGAGAGCCAAACCGGCCC-AGGCCCAGTCTCCGAGCA----ATGCTCCAT----------------------------GCATGGGGCTGAGTCCAGGAGGCA-AGGGGCAAGCACCTGCTGGGAGGACTGTGAGTCCAGAC-CCTGCCGCTGAAGGCCAGAGCCCAGGGATTGCTACTGCGCACTGCCAAAGGGCCAGAGCAAGGAGCACAGCCGAACACACCTCCCTCTCCTCCACAGCGGCCAAGAGGAGGCCA-GGTGGGGAG--AGGCGAACGGGCAGTGGATGCGGAGAAAGACCTCACCTTCATTGTCCGTGGGGTACGGGGAAAGGCTGATATCCACAGGCCGCTCAACTGCGCCGTAGAAGCTGTCTGTGTCCGAGCTGGAGTCGCTGCAATGCAGGGTGCGTTGGGGCGGACGGTGAGCACCAGGCCTGGGAGGTCCCTTGATGCTcacacaaaggtaca----------cacaggcacacgcggat----acatggacagatacacagatg--cacacacggatacactgacaaacacatgcacacaTGGTTAAGC--------TGacagacacacacatgcacacacgga s mm3.chr5 116888947 761 - 149719773 AGACCCACCAGCCTAGGAGAGGCTCTATTCTTGGTCCCAGTCTCTGGTCTCTACTGACCAACGAGACCCCAGGCCCAGCTACCCTACCTACCTTCAAGCTTCATGGGCCCCGGGGAATCAGGCTCCAGGTACGAGTCGTCCTCATCTTCATGTTCGTAATCTACATGCAGTGAATGGAA-GATGAGACACAACATAGCCCGGGGCCCA--CTGCGTGCAGAACACGTGGCACAGCCCACTGCATTTTGTTCCACTCGTGAGAATAGGGC---GCCCAGGAGGCA-GGGGTTGAGGATGGGGAGGTCGGATCTGAAACCTGAATTCACACTGCCCGAGGTCAGAGGCAGAGAA--GCTGCATCACTCTGCCAGA-GGCTAGAGCAGGGAACAAAGCCAAATGTGCATTTCTCTCCTCCTGAGCAGCCCAAGCAGGGTCACTGTGAGCAGTCCTGAGTACATACAGCAGGTGAAGAGA-TGGTCTTACCTTCATTGTCCATGGGATATGAAGACAGGCTGATATCTATAGGTCGCTCAACTGCACCATAGAAGCTGTCCGTGTCTGAGCTAGAGTCGCTGGAACCCAAAGCAA---GGAGCAAGCAATGAGTACTAGACTCGGTGTTTCCCTTGTGA---GCATGCAGGAACACTCCCAACACCACAGCCACACACAGATATGAACATATACAGACACAAGGATAATCCCTCACTTGTGTATGGACAAAAGGATACAAAGGTCATACAGA-----GAGAGATGTCTGGACATGTATACACATGGA s rn2.chr14 78667829 705 + 107821284 AGACCCACCAGCTTAGGAGAGGCTCTATTCTCGGTCCCTGTCTCTGGACTCTACTCACCAAGGAGACCCCAGGCCCGGCTACACTACCTACCTTCAAGTTTCATGGGTCCCGGGGAATCAGGCTCCAAGTACGAGTCTTCTTCATCCTCATGTTCGTAATCTACGTGCAGTGAGTGTAA-GATGAGACACAACACAGGCC-AGGCCCA--CTGCATGCAGAACAGGCGGCAT----------------------------------GGC---ACCCAGGAGGCAGGGGGTTGAGGATGAGGAGGTAGGATCT--AACCTGAACTCCCACTGCTAGGGGTCAGAGGCAGAGAA--GCTGCATCACTCTGCCAGA-GGACAGGGCAGGGGGCAAAGCCAAATGCGCTTTTCTCTCCCTCTGGGCAGCCCACGCGGGTTCACTGTCAGCAGTCATGGGGACATATGGCAGGTGCAGAGA---GTCTTACCTTCGTTGTCTGTGGGATATGAAGACAGGCTGATATCTATAGGTCGCTCAACTGCACCATAGAAGCTGTCCGTGTCTGAGCTAGAGTCGCTGCAACCCAGAGCAA---GGAACAAGCAGTGAGTACTAGACTAGGTGTCCTCCTTGT-------------GAACACTCCCAACACCACAGTCACACACAGATACGAACATATACAGACACAAGGATAATCCCTCACATGTGTATAG------GGACACAAAGATCATATAGCTCTCTATATGACATTTGGGCAT-------CATGTA a score=123984.000000 s hg15.chr4_random 696657 1806 + 1219494 aacacgcagacatgcacacacaaacacagagcaacacgtggacatt-gcacacacacacacagagcaacacgcggacatgcacacacacagagcaacacgcggacatgcacacacacg-----gagcaacacgcggacatgcacacacaGTTACAAGGACAGACAGAAGAACTGGAGGCTGTGGTGCCTCCACTAGGTGCC-CCTTCTGG--CCCACAAGGAT---GGCCGCCCTGACTGTGCCCACGTCTCCACCTGCTCCTGCCTCAAGAGGG--CTTGGGCGACTCTGGGCTGGGCCCGAGGCTGAACAGCTTGGACCAGGGGACGGGAGC-CCGGAGTCAGGCAGGGACCTGCAGGGCAG--CCTTGGCTGTGCCCAGCCCTCCCTGGGCCTCC-TGTCCCCACCTGTGAAAGGACAGGAAGGTTTGTTCCCTCCACATCGTCTCGGGCCAGGAAGTCCCAATCCAGAGAGTATCTGCTGCACGTCGGGCCAGCTCACGGGGGAGGCTGCCAAGGCTCAGACTGCCCAGTGGCGCCCCGCCAGGAGAATCATTCTGGTCTCACTCTGAGTGAGCCAGGGTGGGCG-TAGGGGGCTGGGAACCCAAAGTGCCCAGCTGCTGCCATGCCAGGCCTCCCTGGTGGCAGGC--GTATAAACACACATGATCCCCTAACAGGAACT-ACCCATGGCGGCAACA--CAGAAACAGATGTGACAGATGGGGCTGG-AGGTAGACAGGAGC----AGAGA-GATGCATGCACACCTGTGCATGCTCtgtgtgtgtgtgcatgtctgtgtgttgctctgtgtttgtgtgtgcatgtctgcgtgttgctgtgtgtgtgtgcatgtccacgtgttgctgtgtgtgtgtgcatgtccacgtgttgctctgtgtgtgtgtgcatgtCCACGTGTTGCTCtgtgtgtgtgcatgtccgcgtgttgcttgtgtttgtgtgtgcgtgtccgcgtgtcgctcgtctgtgtgtgaacatctgtgcttgtcctgtatctgtgtttatctgtAGACAGGAGCAGAGAGACGCAGCCCAGCTGGCACCTCCAG-GAAACCTTTAAGGACGGAATTCTATGCCAAGCCC---GGGGCTGGGAGGCGGACACCCGGGTCAGGCCCAGGCGCCCCAGGGAC--CCTCACTGCCCGGTATGCCCTGGGCCCGGGCTC----------ACCTGGTGTCCAAGGGCAGGTCTTTCTTTTCGTGGAAGTGGCCAATCTCCCTGCGCAGCAAGGCCATCCAGCTCTGCAGGTCA-GCGGGGCTGTGGTGGGCACGGTGCCA-CCAGGGTGG-GCCCCACCGCACCCCTCCACCTTCACTGCCCTGCCTGCTCTGCTGTGACTCCCAAGGT-CAGAGGAGGCGACCCGGCT-GGATACAA---------CATGGCTGTGTGGCT-------CCCCTCAGCCCACAGGGGCACCTCCCAGGACAGCATGTTCCTTGTGTGGGCGCTGGCACCAGGCT---------------CTGGGCATGGGGATGGAGCTGGGGCAGCACCCACCCAGCTGCCTGTGTCCCAGCCACACCTTCTCTTTGCCCGGGGC---TGAGAGGCCAGCGCCCCAGGACCAGCG-AGCCCCCAAGGCAGGTCCAGCCTGGTGCCTGCAGGCCCACACCCCCAGTCACCTTGCACTCGTCCTCGGACCCCCAGTCACCTTGCGCTCCTCCTCGGAGGAGGCCGAGAAGAACCACGTGCGGTGCTTCTTGCTGATATGGATGATCTTGAAGGGGAAAACGTTGTTGGACGTGGTCTCCTCAGCCGCCCGCATCACCCTGGGGGCACAGCGCCAGGGGTCACGGCCTGGTTCACAGCTATAGGGATGGCCTT-----CCCAC s mm3.chr5 116889567 1440 - 149719773 AGCATGCAG--GAACACTCCCAACACCACAGCCACACACAGATATGAACATATACAGACACAAGGATAATCCCTCACTTGTGTATGGACAAAAGGATACAAAGGT-----CATACAGA-----GAGAGATGTCTGGACATGTATAC------ACATGGACAAACATAGGGGCTAGAGGTT-TGGGACGATCTATGGGTGCCACCTACTTGCCCCCACTGTGGTTTCAGCCACCCTGACTGG-----------------TCGGTGTTTCAGAACTGGTTCCTCATGTCTATGTCTT-----------------GTTTAACCCTAAGGCCAGGAGCTCTGGATTCAGTCCAGGACCC-CGGAGCAGGTCCTTGAGGGTGCCCAGCCCTCTCTGGCTCTCAGTTTCACTGACTCCAATAGGATTG--ACTTATGTTCTCT--------------------------------AGAGAGCCACTGCTGTTTGCCAGGCCACCTCATGGGTAAGGATGCTGAG------------------------ACCAGGAACACTACACTTCCCCCA--------GAGACAAAGTGGACACCAGAGAGCCAGGAATCC--AACACTGAGCTGTAA--ATGCTGGGTCTGCATAGTAGGGGAATGGAATAGGCACATACGAGCCCCACACAGGAGTT-ACAGATAAGTACCGCAGGCTAAGACAG-------AGTCAGAGCTGGAAGACAGACAAGGACAGAGAGAGATGCTGCATGCACACTTGTACATG-----------------------------------------------------------------------------------------ACTACATAAGCG-------------------------GCGTGTGCATCCACACA--------------------------CGTGAAGCTTGC-------------------------------------------------------------------------------------------------------CTGGTACCTCCAGAAAAACCTTTATGGAAGTGATTATAAGTCTAGTCCCCAGGGACTAGAAG--GGAGCCCTAATT---GCCAAGAAGCCCTCGGGACAACCAC-CCACCCAccacatc-----cctccacatccctccacaGACCTGGTGTCTAGAGGTAGTTCCTTCTTCTCATGGAAGTGGCCAATTTCCCTGCGTAGCAAGGCCATCCAGCTCTGTGGGTCAGGAACAACCGTAGTTAGTATGTTGTTGCCCAGAATGGAGTTCCACTCCACCCTCTTCCCATCACTGTCTAGC--TCTATACAGTAGCCAGCAAGGTCCAGCATAGATCGTGTGTTTCGGACATGAAACCACCCTCATGGGGCTGCGGCTGCCCCCACCCCCCAGCCCATTTCAGGCCATATCCTGTTGGCGTATTCTCATGT---GCACAGGCAC---------------------CTGG--CTGCCCATAGACCTCCACCAAGTCTTTCTC----TTCAGGATCCTAGCCGC---------CTGTCTAGAGCTCATGGGAGGTCAGAGCCTCGTAATCAGTGTGGCACTTCAGGCAAGTGCTGCCTGGCTCCTGGGG---------CCCTGCTACCTG------------------CCCATCACCTTGCGCTCATCCTCAGAGGACGCTGAGAAGAACCATGTTCGGTGCTTCTTGCTGATGTGAATGATCTTGAATGGGAAGACATTGTTGGACGTGGTCTCCTCAGCTGCTCGCATCACTCTGAGGGCACATTGCCAGAAGTCACCAGCTTGTCCA---CTCAAGAAATGGGCTTATCAACCCCC s rn2.chr14 78668410 1406 + 107821284 -----------GAACACTCCCAACACCACAGTCACACACAGATACGAACATATACAGACACAAGGATAATCCCTCACATGTGTATAG------GGACACAAAGAT-----CATATAGCTCTCTATATGACATTTGGGCAT-------------CATGTATGAACATAGGGACTGGAAGCT-TGGGACCATCTATGGGTGCCACCTCCTTG-CCCTATTGTGGTTTTAGCCACTCTGACTGA----------------CTTGGTGCATCAGAACTG--TCCAAATGGCTACTTCTT-----------------GTCCAACCCGACAGCCAGGAGCTCTGGATTCAGTCCAGGACCC-CAGGGCAGGTCCTTGAGAGTGCCCAGCCCTCCCTGGATCTCAGTTTCACCGACTAGGATAGGATTG--ACTTATGTTCCCT--------------------------------AGAGAGCC-CTGCTGTTTGCTGGGCCATCTCATGGGTGAGGACGCTGAG------------------------ACCAGGAATACTACACTCGCCCCA--------AGGATGAAGTAGACACCAGGGAGTTAGGAATCCAAAACTCTGAGCTGTAA--ATGCTGGGCCTCCATAGTAGGGGAA-GGAAAAGACACAT-------------AGGAGTTAACACATAAGTACAACAGATTGAGACAG-------AGACAGAGCTGGAAGACAGACAAGAAC----AGAGGTGTCGCATGCACACTCACACATG-----------------------------------------------------------------------------------------ACTATGTAAGCA-------------------------GCGTGTGCTTCCACACA----------------------------TGACGCTTGC-------------------------------------------------------------------------------------------------------CTGGCACCACCAGAAAAACCTTTATGGAAGTGATTATAAGTCTAGTCCCCAGGGACTAGAAG--GGAGCCCTAAGA---GCCAAGAAGCCCTGGGGAC--TCCC-CCACCTACCACATC-----CCCTGGCAT----------ACCTGGTATCCAGAGGTAGTTCCTTCTTCTCATGGAAGTGGCCAATTTCCCTGCGTAGCATGGCCATCCAGCTCTGCGGGTCAGGAAGAGCCATAGTAAGTATGATGTTGCCCAGAATGGGGTCCCACACTATCCTCTTCC---CACTGTCTAGC--AAGGAGAGGAACCTAGCTGGGTATAGCATAGATCACGTGGCTCAGACATGAAATCACCCTCCCGGGGCTGCGGCTG------TCCCTCAGTCCGCTCCAGGTTACATCCTGCTGGCATATTCTCATGGTGAGTACAGGCACCAGGCTGTGGGTCTAATCCAACTGG--CTGCCCATATACCTCGACCAAGACTTTCTC----TTCAGGATCCTAGCCTC---------CTGTCTAGAATTCATGGGAGGTCAGAGCCTGATGATCAGTGTAGCACTTCAGGCAAGTCCTGCCCGGCTCCTGGGG---------CCCTGCTACCTG------------------CTAATCACCTTGCGCTCGTCCTCAGAGGAGGCTGAGAAGAACCACGTGCGGTGTTTCTTGCTGATGTGAATGATCTTGAACGGGAAGACATTGTTGGATGTGGTCTCCTCAGCTGCCCGCATCACTCTGAGGGCACATTGCCAGAAGTCACCAGCTTGTCCA---CTCAAGAAATGGGCTCATCAACCCCt a score=18623.000000 s hg15.chr4_random 698463 184 + 1219494 AGCACCCCCCTGTGAACACGTCTCGGCAC-CAGCACCACGCCCCAACGGAAGAGGGCAGATC-GGGTGGGCCCTGGCTGCTGATGCTCCCAGTAGTGAGCTTCATGCCCAGGCAGGCGTAAGGGGGCATGGAGGGGCATGGA---AGAGGGGTGCTGGGT------GGGCTTCGTGGGAGCAGCAGTGCACAGGA s mm3.chr5 116891478 183 - 149719773 aAAGCCCACCCCTGAACTGATTCTAGCACTCAGCATCATGACCTGCGGAATATGGGCAGATCTGAACAGTCTCTGGATGCTTACGATCTCAG-AG-------AATACCTAG--ATGCTTCAGGGAG-TTAGCAGAGTATGAGCTCAGGAAGGTGCTGGGTGTCTGAGGACTTCCCAAGAG-AACAGAGTGCAGGA s rn2.chr14 78670261 184 + 107821284 aAAGCCCACCCCTGAATTGATTCCAGCACTCAGCATCATGCCCTGGGGAACACGGGCAGATCTGGGCAGTCTCTGCCTGCTTAGGCTCTCAGTAG-------AATACCTAG--ATGCTTCACGGAG-ATAGCAGAGTATGAGCTCAGGAAGGCACTGCATCTGTGAGGGCTTCCCATGAG-AGCAGAGTGCAGGG a score=1361.000000 s hg15.chr4_random 699468 41 + 1219494 AGGGCAGCTCATGGCCCATCACTGGATAGAGCCCAGCCCAG s mm3.chr5 116893108 41 - 149719773 AAGGAAGTTCATGGATTCTGGCTATCTGGATCCCAGCCCAT a score=103812.000000 s hg15.chr4_random 699509 971 + 1219494 GACATGCGTGAAGCTGGAAACTGATCCCG-GCCTGGGAGGACCCTGGAGCAGGGAATCCTAGGGCCCAGCCTCTGTTTGGGACAGGGCCTGGGCTGGCTGGGGTCTGGGCTGCCTGGAAAGAGGTCATGGTGGGTGAAGGGGCAAGGTGGGGAGGGAGGAGAGATGCAGAAGTCACTGGGTGGTGGCCGAGTGGAGACTCTGGAGAGCAGGCTGTCCAGGCCTCTGGGACTTGTGCACAAAGCCACAGGAAGACCCTGG---------CACCCCCAAGGTCCTGCGCC------TGAGGGCAGGACACGCGGAGAGGGCGAGGCACTGTGGAGGCTGGGCGGGGAGGACAGGGGATGG-----GCACGAAGGCTGCTTCGGGAAAGCACTTTCCTTGGGCGGGAATAAGGGGCAGGCCCAGCTGGGGCTCTGCTGGGAGGGACCCG-CTGGCTGTGGGGGCCCGAGGTCAGCAGGCAGGTCGGGCACTTACCGGTTATAGCCACTCAGGGAGAAGGCGCCCTGCGGGGAGGCAGAGGTGCTACTCTTGAAGTAGTAGACGCAGCGTTTGTGGATGATGACAAAGCGCAGGGGCCCTGTGGGAGGTGGCAAGGGCAGGAAGGTGAGCCTGGAGGGGCAGCTGCCAA-GACCCACTGTGAGGACC-CTCCA------CAGGACAACTTGGGGCCAGGCCTCCTGCCTCTAAGCCTTACCAAATGGAAGAGCAGGGAGCAAGGCTGGCATGCTGCCCCCTCCCCAGGAGCCCACTCTGGGGCCAAATACGGAAAAAATTGTAGGCACACTGGCTAGCCCCAGAGTGCCACCCGAGGGCAGGCCTGGCTGCCCACAA--------AGAAGAGGTAGATTTGGGGGGCTGTGTGGAGCCAGCATGAGGCAAGGCAGAGCCAGGACCAGAGGCCCAGGGAGGCCACAGCTGACTTGCTGGGTGCTGCAGGGCTGTTGGAGGCTCCCACTACCCCAGAGCTAAAAGAGGGGGACTA s mm3.chr5 116893149 885 - 149719773 ------AATGTAACAGGGAACTGAACTGGAGCCTGGGAAAACCCTAGAGCCAGAAATTCCATGA-AGAGCCTGAGTTTAGGAT--GGCCTGGGATGGATGGAGTCTGGGCTCCCTGGGAAGGG-GTGTGGTGAGTGAGG------AGCAGGATCAGAGGCTGAACACAACATTTACAGAGTGGTCATTGAATGGGAACTCAGCAAAGTAAGCCACTCAGGCCCTTGGTACCTG------AACCCCCAAGAAGCTGCTAGTAAAGACCTCACCCCACACATACTGTCCCACCCCCTG---------CCCTCAGCAAAGGC---------------CAGGGTAGGTAGGATAACAGCCAGCAAACAGATGAAGGCCATCTCAGACAGTC--------------------AGGGATTGGTTCTG-TGGTGCAGGGTGAGAGGGAGGGCA-------TGGGAGGTT---GGTGAGCAGACAGGATGGACACTCACCTGTTGTAGCCACTCAGTGAGAAGGCACCCTGTGGGGAGGCAGATGTGCTGCTCTTGAAGTAGTAGATGCAGCGCTTGTGGATGATCACAAAGCGGAGGGGCCCTGGGGACAAT-TCAGTGGCAG--AGGTGAGCC-ACAGAGCCACCAGTTAA--CTCTACTCTGAGGAGGTCTCCAGAGGTCCTGGGCAACTTGGAAGCAA-------ACCTCTGAGACTG--CAGAAGGTAGAGCAGGGAGCTGAGCTGGTATGCTGCCCCTTCCTT--GGACTTTCTTTGGGGTCAAATATAAACAAGTTCACTGGCACATGGGCAAGTTTTGGGGCACCATCCCAGGAAAGGCCTGGCCAC--AAAATCTGGCCCAAAAGGGGTAGATTAAGG----CCTCAAGGGACAG--TAAGAAAGGGTGGAGCCTGGACCAGAGGCCTAAGGAGGCCATGGCAGCCTTGCTTGGAGCAATAGGGCTATTGAGG----------------------AGGTGAGGACCTG s rn2.chr14 78670982 862 + 107821284 ------AATGTAGCAGGGAACTGAACTGGAGCCTGGGAAGACCCTAGAGCCAGAAAATACATGA-AGAACCTGAGTTTAGCAT--AGTCTGGGATGGATGGACTCAGGGCTCCCTGGAAAAGGAGGGTGGTGAGTGAAC------AGCAGGACCAGAGGCTGAACAAAGAATTTACAAGGTGATAATTCAATGGGAACTCCACAAAGTAAGCTACCCAGGCCCCTGGTACCTG------AACCCCCAAGAAGTTCCTAGTAAAGGCCTCACCCCACACATACTGTCCCACCC--TG---------CCCTCAGCAAAAGC---------------CAGGGTAGGTAGAATAATAGCCAGCAAACAGATGAAGGCCATCTCAGACAGCT--------------------AGGGATCGGCTCTG-TGGTGTAGGGCGAGAGGGAAGGCAATTGGCAGGGGAGGGT---GGTGA-CAGGCAG-ATAGACACTCACCTGTTGTAGCCGCTCAGTGAGAAGGCGCCCTGCGGGGAGGCAGATGTGCTGCTCTTGAAGTAGTAGATGCAGCGCTGGTGGATGATCACAAAGCGGAGGGGCCCTGGGGACAGT-TCAGCGGCAG--AGGTGAGCC-ACAGAGCCACCAGTGAGGGCTCTACTCTGGGGCCCTCTCCAGAGGCCCTGGGCAACATGGGACCAG-------ACCTCTGAGACTG--CAGAAGGTAGAGC-------TGAGCAGGTGTGCTGCCCTTTCCTT--GAGCTTTCTTTGGGGTCA----------------CTGGCACACTGGCAAGTTTTGGGGCACCACCCCAGGAAAGGCCTAGCCACCCAAAG--------AAAATGGGTAGATTAAGG----CCTCAAGAGACAG--TAAGAAAGGGTGGAGCCTGGACCAGAGGGCTAAGGAGGCCATGGCAGCCTTGCTTGGAGCAATAAGACTACTGGGG----------------------AGGTGAGGACCTG a score=160916.000000 s hg15.chr4_random 701457 2117 + 1219494 GGGAGA-CTCAGGAGCCCGGAGAGTTTGCCAGTGAGAGCCACTGGTGTGGGGCCACCCCTAGGTGGAAAGTTACACTGAAACCACCCTAGCTCCACTGCCC----CAGCCCTGTCCCAGGCTGGGGGACAAGCCAGTTACAGCTCCTCCAAGGA----GGCTGTCTGTGCAAAGAGGAGAACAGCTCAACCAGTGCCCGTACAGGAACCAATCAGTCCAGCCTGGACATCTCAACCAGGCGGCCCAGGACCAGGGAGTCCCTGGCAGAGGGCACTGCTACTGCAAAGGCATGGAGCACCT---GCTGCTCAGGC--CCTG---ATGCTCTT--------GGCCTTCAGTATCTCAGCATTTGGGTATCTCTCAAGCCTGAGGGCTGCTTCTTCCTCCCAGCCAGCTGTCCTGGGGGCCAGAGCCTGGGTCTTGTGCAGCTCCAGAGGTCCAGCACCCAGCCAGGACTTGACACATAGGTTCACTGTGGGCGAAGTGACCAACTAACTCACTGAACATTCACGGATTCAGTGAGGGCAGCACC-AGAGGCCAGACCTACCTGGCCAC-CTGTGGTCCCCAGGTCCTGGCTGCAGGCTGCAGCTCCC----CT-------------------------------TGCCAGCTGGCCA-GCACTGTGCACCACCCCGGACCCTGCTACA--GTCCTGGGGGCTAGGGAAGTCAACCTCTGCTTCTCCAGGGGTGCCAGCCACCAGAGAGGGAATGGGAAAATCCAGAGGGCACACCATGTGAGGAAGCAGAGGCTTGGAGAGGATGCTTACTTACATGGCTAGCCCTGCCCCCATGCCCTCCTACTGTGCACCCTACCACCCCAGGGACTCACATTTCAGCAGCTGAAGCTGGGTACCGCCCTTCTTGTGCAGGTAGCCAGCCTTGGCCACGCC-CCAGGCATGGTTAGCAGGTTCTGGGCACCAATGGCCTTCATAGGGACAGGCCAATGCATCTCTTCAGCCGCCATGAAGCTGCAATAAAGGACAAAGGCACGTGGCTCAGCTACGGTCAGG----CAGGAGATGTCTGAGCCAGGGCGCTCAGGGGGACACTGCCAAGATCCAGGACACAGCTTGGAGGGTAGGGCCATGACAGGCAAGGAAACCCCTTTTCTGAGGGCCTTGG-GCTTCCAGGTGGGACCCCAGGGAGAGACAGAGCCACGGGCTCCACTCAGTCAGCCCCTGGTCCACTCAGCCACAAACCCAACCCCAGGATCCTGAGCGCTACGTGCAGCCCTTTCTCTCCACTGGTTCATTCTGCACACAGCCACTGAGCGCAAGGCCCCACGGGGGCT-GGGTAGAGATGAACGAACTCAGAAAACTGCCAGCCCAGGTAAGTGAGACCTCAGGCCATAACTACTT-CAAGTCCCAGTGCCAGGTGAACCTATAAGGGGCCTA---------GACAGGAAG----------------AAGGCAAGTGAGCAGCCAAGAGCACCCAGCTCAAACGACCTGGGCTCCCATCCTGGTGTGACTTTCTGGGAGATCCCAAGCCTCAGATGCTGGAGGACAGAGTGGACACCCAGCCCAGCACA--CAGCACACTGTTGTCAGCAGT---GGTCGTGACCACCATTTGGTGGGTTGGCTGCTATCCACCCCACCAGCCCAGGATATCACTCCCCTTCCCTCTGAGCCCAAGCGAGGACCACACAGTCAGTGGAGGACCAGTGACTGCCTTGGGGCTAACCCAGGCCCACAGGACCCAACATCATGCCCTGCCCCCTACTCCAGCCCCCCTTACTCAT----GCTCCAG------CTGCTCTCCTTGAGATACACCATGCTGTTTAATGCTTCCTCCTCT---------GCCTGAAATGACCTCCACCCCTTCCCATGCAGAGAACTTCTACTCA--TCCATCAAGACC------CAGGTTAAGAGCCCCTCTTCTGCTAGGCACCCTCATTGCCC-----ACTTAAATCCAGCATCTTCCTC---------ATCTCTTGTCCCAGTGAACAGTACCCCCCGACCCTGCACTGTTTGGTCTGTGCCTGCCCTCACTCCATCCTGGGTAGGGTCACTCCTGTGGCCCCAGTGGAGTTGGATGGGAGCAGGCCTGTGGCCAGTGTCCTGTTAAGCCCTTAGTGGAGCAGCTAAGGTCAGACCCAGATGCCCAGTGGGGCTGGGACTGGTTCCACTACAGCTCCAAC--CCCAAAAAACATACATAAAGAAAACT s mm3.chr5 116894047 1827 - 149719773 AGCAGAGCTTAGGCACCC--AGAGCCGGCTGGTGAGAGCCATCGAGGTGGAGCTGTTCTCAGG---------------------CTCTAGGGCTCCTGCCCAGAACAGCCCC-TCCTAACCCTGGGGAAAGGTTATTTATGGTTCTTCCTTGGAGCACATACATCTATACATTGC------------------TATGCACACAGGGTCCAA-CAGTCCAGCTAGAGCATCCCAGGCAGGCAACACGGGGGCAGGGCATCCCTGGCAGAGGGCATCCCAGGGGCAAAAGGATGGAGTGTCCATGGCTGATCAGAG--CCGGGCAAGGCTCTAGCGCTCTATGCCTTCGGCATCCTGACACTCA-------------------------------------GCTGGCT----------------CCTGG--------------------------------------CCTGCCACATGGGACCATTCTGTGCCACATGACTCACCACCTCACCCACAAGTCACATGCAAGGCAAAAACAGCACTGAGGGACCAGATCTATCAGGCCACCCTGAGGACCTCCAGCCTTGGCTGCAGACTGAAGCACTCATGACT-------------------------------CCTCAGTTTGCCT-GC----TATACTATGTTGGATCCTGTGACAAGGTCCAGGG---TAAGGAACTCA---TCAGGTTTCCTAGGTGTGCCAGCTGCTAGAAAAGGAAAAGAAATCTCAGGAGACCC-------------ACTAGAGCCCTGGAGAAG-----------CAGAG------------CCGTGTCCTCCCTTTGAAACTCCCATGA-TCCAGTGACTCACATTTGAGCAGCTGCAGTTGGGTGCCACCCTTCTTATGCAGGTAACCAGCCTTCGCCACACCACCAGGCATGGTCAGCAAATTCTGGGCACCAATGGCCTTCATGGGGACAGGCCACTGCATCTCCTCAGCCGCCATGAAGCTGCAATTGAAGCAAAAGAGACAGGACTCAGCCGGGA---GGACAGCGGGGAACAGTTTGGCAGGGGGTCCTGAGAGGGCATGGCTAAGATCTAGAAGGCAACGTGGAGGGTCAGGTCAGTGGAGGAGGA-------CTCTTCATAAGTCCCCAG-GCTTCTGAGTGGGGCTCTGGGG-GTGACCATGCCACA---------TAGTCAGTCCCCAATCCTCTTGGCGACACACCTGACTCCAGAATTCTGAGC-------ACAGTCCTTTTACCACCGTGAAT--------------TCAGCGAGTTCATGGCCCCAGGAAGGCTGGGGCAGTAATGACTGAACTCAGGAAGCC-CTAGCCTGGGCATATCAGGCCTTATGCCATAGCTACCC-AAGGTTCCAATGCCTGGGCAGCTCACAAAGTGCTTG------------------------------TCCTAGAGCAGG-----------GGGCA----------------------------CTGGGGTCACCCCCTTGAAAATGGCTGTTCAAGAGCACTGAGGCAGGCAATGAGAACCTTTTCCATCAGATCTGATCTTCTATGGAGAGAAAGTCAGGTCCTGA---------------------GATGTCCACCCTTC---CTCAGTA---------ACTTCTGTCTATCCCCACTTTGAAGCCCTGAAGTCAG----------GTAATAG---AAGAGCAAGCCAAGA-------------------------GCCCCCCACTTC--CCAGATTTAATAATTTGGGCTCCAA--TAGTTTGGCTTTCTGGGGGAACTCCAGCC---TCAGTTGTTAGAGCTATAAATTGGGAGCACAGGGTGGACTCTGAACA--CACACACATACACCTTGTCATCAGTGCCATGAGGACCATTTGGCAGGTT-----------TTCTAGTATCCACATTATCAGCCCAGAGTATCAAGACTCAGAGGGTCCTTCCTGTAAGGAACCCCAAGTGCCAGTCACAATTGCCCCCTAACTTGGCATTATTCTGTTGGTACACCCACTCACCCCATC-------AGGTCCCTCTTTGGACCC-TGAGGCACTGCATGAGGGGAA------GGTCAGGGATCTGCTCTCAACAAGGTGGGATGGCTCCAGCCATATCCAGAAGGGCAG-GCTGCTGAGATTTCTATTACTATAGTGCCAACTCCCCCAAAAACACAC--AGAGAAAACC s rn2.chr14 78671857 1851 + 107821284 AACAGAGCTTAGGCACCC--AGAGCTGGCTGATGAGAGCCACAG----GGACCTGTTCTCAAG---------------------CTCCTCTGTTCCTGCCCA--ACAGCTCC-TCCTAACCCTGGGGAAGGCTATTTTATGGTTCTTTCTTGGA----AGCTGTCTATACATTGA------------------TATGCACACAGGGTCCAA-TAGTCCAGCTAGAGCA-------------ACGCAGGGGCAGGGAGTCCCTGGCAGAGGGCATTGCGAGGGCAAAAGCATGGAGTGCCCATGGCTGAGCAGAGAGCTAGGCAAGGCTCTT--------TGCTGCCAGCATCCTGACACTCA---------------------------------CTCAGCTGACT----------------CCTGG--------------------------------------CCTGGCACACGGCATCATTCTGTGCCACGTGACTCGCCAGCTCACCCACAACTCACATGCAAGGCAAGAACA-CACTGAGGGACCAGACCTATCAGGCCACACTGAGGTCCTCCAGCCTTGGCTGCAGACTGAGGCACTCATGACTTAGCTGGTCAGTACGTACACCAAATGTTCATCCTCACTTTGCCTAGC----TGTACTAAGCTGGATCCTGTGACAGGGCCCAGGG---TAAGGAAATCA---TCAGGTTTACCAGGTGTGCCAGCTGCCAGAGAAGGAAAAGAAATCTCAGGAGGCCCC------------ATTAGAGCAGTGAAGAAG-----------CAGAA------------CCAGGTCCCCCCTTTGAAACTCCCAGGA-TCCGGTGACTCACATTTGAGCAGTTGCAGCTGGGTGCCACCCTTCTTGTGCAAGTAACCAGCCTTGGCCACACCACCAGGCATAGTCAGCAAATTCTGGGCACCAATGGCCTTCATGGGGACAGGCCAATGCATTTCCTCAGCCTCCATGAAGCTGCAATAGAAGCAAGAGAGACAGGACGCAGCTGGGGT--GGACATCAGGGAACAGGTTGGCAGGGGATCCTGGGAGAACAGAGCCAAGATCCAGAACGCAATGTAGAAGGTCAGGTCAGTGGAGGAAGG-------CTCTTCTTGAGCCATCAACTCTTCTGAGTGAGACTCTGGAG--TGACGGTGCTACA---------AAGTCAGTTCCCAATCCTCTTGGCCACACACTTGACTCCAGAATGCTGAAC-------ACAATCCTGTCTTCACCGTGAGT--------------TCACTGAGCTCATGGCCCCAGAAAGATTGGGGCAGTAATGACTGAACTCAGAAAACC-CTCATCTGGGTACATCAGGTCTTATGCCATAGCTACCCCAAGGTTCCAATGTTACAGGAGCTCACAAGGTGCTTGCTTGTCTTAGGCGGGAAGTCAGGGGTGGCTTCCTGGAGCAGG-----------GAATA----------------------------CTGGGAATCACCCCTTGAAAATGGCTGTTCAGAAGGACTGAGGCAGGCTTTGGGCACCTTCTCCACTAGGTCTGACCTTCCGTGGAGAGAAAGTAAGGTCTTGA---------------------GATGTCTACCCTTC---CTCAGTA---------ACTTCTGTCC-------TTTTAAAGTCTTGAAGTCAG----------ATAATAGGAGAAGAGCAAGCCAAGA-------------------------GCCCCC-ACTTC--CTCAGTTTAATGATTTGGGCTCCTACCTAGTTTGGCTTTCTAGAGGAACTCCAGCC---TCGGTTCTTAGAGCTATAAATTGGGAGCACAGGGTGGACTC--------CACACAC-----CCTTGTCATCAGTGCCGTGAGGGCCATTTGGCAGGTT-----------TGCTAGTATTCACTTTATCAGCCCAGTGTATCAGAACCCAGAGGCTCCTTCCTGTGAGGAACCCCAACTAGCAGTCACAATTGTCCCCTAAACTGGCATTATTCTGTTGGTACCCCCACTTACTCCATC-------AGGTCCTTTTTTGGACCCCTGAGGAACTGCATGAGAATAA------GGTCAGTAGCCTGCTCTCAACAAGGTGGGACGGCTAGGGAGTGATCCAGAAGGGCAG-GCTACTGGGATTCCTATTACTACAGTGTCAAT--CCCCAATTACATAC--ACAGAAAACC a score=160148.000000 s hg15.chr4_random 704118 1715 + 1219494 GCACCCTCCAACAAAAGTGCAAGAGGAAGTCTTCAAGGCATCAGGCTGTCTTCTGCCGGCCTCGGCCTGGGTCAC----------------------------------CCGGCTGG--ACCCCA-------------CCAGCTC-------------CTTCTGCACCCAAAGACAGCCCCTCTGGGCAGGGAGGGG-----------------------------------------------TCAGGGGCG----------GGTCCCAGCCGCA---------------------GGACCCCCAACCACAG--------GCCAAGGTTTGGAACAAAGGCGCCGCCACACCCCGCCGCCCGCCCA------ACCGCGCCCGGCCCGAAGGAGCCCCGCAGTGGGGATGGAGGAGGGAGCCCCGTGCCCAGTCCGCCCGCGGGGAGCTGCCCGCAGATCGACAAGCCCCGTGCCGGCCTG----AGTCCCCCATCCGCCCGCC--GGGACGGTCCACGCCCGCCTTTGTTC--------CCCCAAGAAGCGCGTGGG-------CGACCAGCAGCGCCCGG------------GGCTCGCGGCCCTGGTCCAAGGGCTCGGG-----------GTGCGGG-GTCCAGAGCCGGAAGCTCGCGGCCCGGGTCCCGGGGTCCGGGGGCCGGGGCTCGGTACTCACGGCGTCCACGCGGCGGGCATGGCCGGCTTCCCCGGGGCGATCCACGCCCGCCTCCCCTGCGAGCACCGGCAcggccccgggccgcgtcccccggccgccgccgcctcgtcccgggcgcccgcctcccgccggccccagctccgcggccgcggcccggagcccgccAT-GCCCGCCGG--CCCTGGCCTG-GCAGCCGCCGGCTCCTCCCCTCTCGGCGGG--------GGACTGGGCGGGCAGGTGAGGATcccggcgcgcccctcccggccccgcccccTGCCGCGTCACCGTGCGCGGGAGGCACGTGAGCCCCCTGCGGGCCTCAGTTTCCCCA--CGCTGCAAGGAGGTTGGTGGGCGCTTGGGACAGGAGGCCC----ACATCTGTTGGTGCAGCCTGGAATCAAGAAGCCTTCGATGCAAACGAGGCCTCCCGCTCCACTCCCCCAACACCTGCCAGTCCACACAGCTTGGTTGGAAATCCACGGCCGGCGCGGGAGCCTCGGC-TCTGAGGCCCCGCCCAGGTCCCATCCCGCCGGGCCCTTGCAACCAGCTC---CCTCGGGAAAGTGGCCTCTGCAAAACGGCACCTGCATGGAGGGCGGCAACGGGGCAAGGGATCGGGCACGTGCCCCGCCC--TCACCTTCTCCACTTTCCTGCGGGACTCCATGGGCCTCC---AGCCCCGGATT--CTCCAAGGAGCCAGGGGTCTGGTCCTTGGCACCTCCCACCTGCTTGCCCAAACGCAGGCACCTCACCCAGGAGAGTCCCCTGGGGTGGCCAAAGGCCGGCAGAGGCCCTTGCTGGCCTCCCAGGCATCCTGCCTCCTCCATCTTCCACCTGCAAACAAGCTGCCACCAAGATGGGC---------CAGA-----------------TGCAGGTGTGGCTCTAACAG-----CCTGGGCCTGAC-CCTACCTAGCTGTCCATCCTGGGCAC-CCACCCTGGT-TTCAAGGCCCCACCTCAGGCCCGCTATCTGGACTTCTTCCCACTGCACCCAGCCTTCGAGGCTCTGTCCCATCTCTGTGCCTCT---------GTTCTCAG-TGCCCTTG---TCTGG--------------CCTGCCTCA-------AGGATCCCACCTCCTTCCAGCCGCCCTGC----CAGGC---CCCTCTCCATTGCCTCTTGGCAACCCCCTCCACTTCCTCTCCTCAGGCTTCC-----TCTGCCTCCAGCCCCCTCCACCCAGCACAGAATCAACACGCACACCATTCCCATCACTGCTCAGTGCTAAACCTCTAGGGCCTCCTCATGC s mm3.chr5 116895941 1805 - 149719773 gCATCCGAAAATGAAAG-GAAAAAGGATG-------GAAATCAATTAAGCTCTTGTCAA---CGGCCAGGCTCACCTCACACCGCCAAATATGTGTTAGAGAATCAAGTTCCGTTGGCTACCCcatacacacacacatcacacacacacacacacacacacacacacacacacacacacacacTgagagagagagagagagagagagagagagagagagagagagagagagagCGCATTAACACTCAAATGCACTTGGTCCATGGTCCAGGCCATT--------GGTCAGGACCATTGGTCCTCGAACCACAGAACCACAGGCGGAGGTTTGGAACAATGGCGCGACCACACCCCCGCGCAGGGCCAAGGGG-AACGCG---GGTCC----GAGCACAGCAGTGGAGTGCGAGGAGGGTGCCCACTCCCATGCCCAT-------GCCGTGCAAGCAGATGGACAGACAGCGCGCCAGGCTCTCGAAGCCCCCTGGCCAGCCAACTCTGGCTGGCCCATGCTCTCCTTTGTTCTGAGTAGACGCCGGATAGCGCCTGGGGCTCCAGGGACTTTCGGTCCCGGGTCGTGGTGCAGAGGGTGGGGGCCCAGGTCTGAGGAGTGGAAGTCTGAACTGAGTGTGGATGCTCAGAACCAG-GGCTGGGGCCCCAGATCCCGAGCCCCAGG----CAGGATCAGTACTCACGGTGTCCACGCGGCGGGCACAGCCGGCTTCCGGGGGGCGGCCAGCGCCCGCCTTCCCTGTGAGCAGCGACAGGGTCCCGAGGTGGGCCCACCG---GCCGCAGCCTCGTCCCTGGAGCCTGTCTCTCGCCAGCCCCAGCTCCGCGGCCGCGACCCTGAGCCCGCCATAGCTCGTAGAGCCCCAGGCCGGAGCTGCCCCTGGCTCCTCCCCTCGCGGGCGGTAGTGTAAGGGCTAGG-GGCCAGGTAAGAAAGCGGACCCGCCCCTCC------------------------------------TTACG-----------------TCAGTTTCTCCACCCACTGCACTGAGGGTGGTGGGCTGCAATAAGTGGAAACTTGGAAACTTGTGTCTGTATAATCCAGAATTAAG-AGCCATCCAGACAAACAAGG-----------AAGCCACCAATGC------------------GAATGAGGAAGTCACGCTC------ATATTCCCAACATCTGAGGATC--CCGAAGTCCCCGCCTGCTGATCTC---CACCCAGTTTGCACCTTGGATATG-AGCGT-----CTATGGCACC----------------------CTACTTCCTACGCTAGTACCCCATCATGTCACCTTGCCAATGTCC-------ACTCCATGGGTCTCCCTCGGGACGGAATT-CCTCCAAGGAGTGAG----CCAGCCCTTGGCAGCTCTTACCTACTTGGGCTTCTTTGAATACCTGTCCCAGAAGAGTGTTCCTGGAT-GCCTAAGGCTGGTAAAGCCC--TGTTGACTTCCTAGGCATCCTTCCTTCTCCATCTCCCATCATCACACAGGCTGCC-CCAAGATGGACTATCTGTGGCAGAAGGCAGCACACTTGCCCTTCAGAGGCAACTCTGGT-ATATTCCTCAGGCTTCACTCCCA-CCAACTGTCTATTCTAGACTCTTCTCCCTGGTGTCCAAGTCTCTATATTAGGCAAGCTCTCCAGGCCCCTTCCTACTATATGCAGCCTTGACGTTCCTA---CAGCTTTCTCACTCCAAGAGTCCGGCTGCCTG-GGGCATTGGTTTCTGGAGGAACA-------TCTTACCCAGAACACTAAGCTGCCTCCTTCTTCCAGCCACCCTGCATTACAGAT-CCCCGTCTCTACTGCTTCTGAGCAGGCCACACCTCTCCCT--------GCCTCCCCCAATTTCCCTTCCTCACCTTCCAGCCA---------------ACACACCATTCCCATCACATCATTATTCTAAATGCCATGGACACAATCCTGC s rn2.chr14 78673774 1766 + 107821284 gcgtcAGAAAACGAAAG-GAAAAAGGATG-------AAAATCAATCAAACTCTTGTCAA---CGGCAAGGCCCAC-----GCCACCAAATATGT--TAGAGAATTAAGTTCCGTTGGCTACCCCA-acacacacaca-cacacacacacacacacacacacacacacacacacacacacacacacacaAGGGGGGAG---------------------GTGAGATGGGGGGAATCCACTAACACTCAAATGCACTTGGTCCATAGTCCCGGCCAGCAGGAGCAAGGTCAGGGCCATTGGTCCTTGAACCGCAG--------GCAGAGGTATGGAACAATAGCGCGACCACACCCCCACGCAGGGCCAAGGGGGAACGCG---GGTCC----GACCACAGCAGTGGGGTACGAGGAGGGTGCCCACTCCCACACCCAT-CGGGGGAGGGTGCTAGCAAATGGACAGACAGAGTGCCAGGCTC--GGGGGCCCCCGGCCAGTCAACTGTGGCTGGCCCATGCTCCCCTTTGTTCTGGGTAGACGCCGGATAGCGCCTGGGGCTCCATGGACTTACAGTCCCCAGTCGTAGTGCAAAGGCTGGGGGCCCAGGTCTGAGGAGTGAGAGTCTGAA----GCGTGGGTGCTCAAACCCAG-AGCTGGGGCCCCAGATCTCGAGCCCCAGG--------ATCAGTACTCACGGTGTCCACGCGGCGGGCACAGCGGGCTTCCGGGGGGCGGCCAGTGCCCGTCTACCCTGTGAACAGCGACATTGTCCAGAGCCGGGCCCACCA---GACGCAGCCTCATCCCTGGAGCCCGTCTCCCGCCAGCCCCAGCTCCGGGGCCGCGACCCAGAGCCCGCCATAGCTCGTAGAGCCCCAGGCCGGAGCGGCCACTGGCTCCTCCCCTCGCGGGCGGAGGAGTAAGGGCTAGG-GGCCAGGTGAGGAAGCGGACCCGCCCCTCC------------------------------------ACACG-----------------TCAGCTTCTCCACCCACTGCACTGAGGGTGGTGGGCTACAAGAAGTGGAAACTTAGAAACTTATGCCTATACAGTCCAGAATTAAG-AGCCATCTAGACAAACAAGG-----------AAGCCACCAAGGC------------------GAATGAGGAAGTCCCGTTC------ATATTCCCAACACCTGAGGATC--CCAAAGTCCCCGCTTGTGGATCGA---CACCCAGTTTGTGCCTTGGATATG-AGCAGAGGAAATAGGGTAC-----------------------------------------------CATGTTACCTTGCCAATGTCC-------ACTCCATGGGTCTCCCTTGGGACAGAATTCCCCCCAAGGAGCAGGGGGTCCAGCCCTTGGCAGCTCTCACCTACTTGGGCTCTTTTGGGTGTCAGTCCCAGAAGAGTGTTCCTGGCT-GCCTAAGGTTGGTAAAGACC--TGTTGATCTCCTAGGCATCCTTCCTCCTCCATCTCCCAT-ACAATACAGGCTGCC-CCAAGATGGACTGCCTGAGACAGAAGGCAGCACCCTTGCCCTTCTGAGG-AGCTCTGGTAATGTTCCTCAGGCTTCATTCCCACCCAGCTGTCCAATCTACGTTCTTCTCCCTGGAGTCCAAGCCTCTAGATTAGGCAAGCTCTGCTGGCCCCTTCCCACTAGGTGCAGCCTTGAGGTCCCTG---CAGCTTTCTCTCTCCAAGAGGCTGGCTGGCTGCCTGCATTGGTTCCTGGAGGAGCACCTGCCTTCTTACCCAGAACACTAAGCTGCCTCCTCCTTCCAACCACCCTGCACTACAGGTCCCCCCTCTCTACTGCCTCTGAGCAGGCCACGCCTCTCCCA--------GCTTCCAACAATGTCCTTCCCTTGCCTTCCTGCCA---------------ACACACCATTCCCATCACATCTTTAGTCTAAATACCACAGACACAGTCCTGC a score=28150.000000 s hg15.chr4_random 705833 303 + 1219494 CAACCTGGCCCTTCCTGATTCAGCC--ACTCCTGCCCTCTACCTTC----TGTGCTCTTACGCCAGCCAGACC----------------CTAT-----GGCTCCAGTTACCTGAATCGAGCAAGCACCCACTTGCAGGCCTCAGCCCCTGCTGTTGCCACAGCCTAAAGTTGAAACTGAACTAACCCAGCCATCAAGAGTTGGCTCAAAAGaacatggatccttcacaaacttccagaaaatagaagaggagggaactcattctatgagagcagcattatcccaataccaaaa-ccagacaaagacatcacaat----aaaactacaaaccaata s mm3.chr5 116897866 284 - 149719773 CACTCTAGCACTTCCTAATCCAGCCCTACCTCTACTTTCGACCTTTTAGATGTGCT-TTGCTCTG------------------------CTGTGCACAGACTCTGCTCACCCAAGCCCA-CAAGAATTCA--------CCTTAGTCCAGGTTGTTTCCACTGCCTGCTGCTGCAAGTAAAGTAATTTAGCCATTAAATATTAGATTCCAAGAGCACTAGTCATATACAAACTCGC-------------AGAGCAAATCCA----atgaggccagcatcacctcaatacccaaacccagatgaagctgtcacagacacgaaagctacagaccaata s rn2.chr14 78675677 309 + 107821284 CACTCTGGCACCTCCTAATTCAGTCCTACCCCTACTTTCAACCTTTGGTATGTGCT-TTGCTCTGTCCCCACCTTCTGGGTCTCTGTCTCTGCGCACAGACCCTACTAACCTAAGCCCA-TAAGAATTCA--------CCTTAGTCCAGGTTGTTCCCACTGCCTGCTGTTGCAACTCAAGTAATTTAGCCATTAAATATTAGATTCTAAGaacactaaccatatacaaattcacccaaaa-aacataaaaccaaagcc-----atgaggccagtatcaccccaataccaaaacccaggtaaagctatcacaag----------acagaacatta a score=8557.000000 s hg15.chr4_random 706136 110 + 1219494 tcccttatgggtatagacataaacatcctcaacaaaatactggccaactgaatcctgcaacatataaaagggattctacaccaagaccatgtgggatttatcccaggaat s mm3.chr5 116898332 72 - 149719773 CCccttctgggcac-agcataaacattctccacaagatgctagcaaactgaatctaacagcacataaaa-------------------------------------aaat s rn2.chr14 78676213 73 + 107821284 ccacttctggatataagcataaacattctccacaagatgccatcaaactgaacacaacgccacataaga-------------------------------------aaat a score=21672.000000 s hg15.chr4_random 706369 220 + 1219494 taagaagagtcaacaaaccaggaatagaagggaag--ttcctcaatctgataaagggt-tctatgaaaaacccacagctaacatacctagtggtaaaagactgaaagttt----ttcccccaagaacaggaacaaggaaaggatgtctgctc---tacttctattcagcatagtactggagattctcaccagagtaatta---ggcaataaaaagaaataaaaggtatccaga s mm3.chr5 116898476 207 - 149719773 aaggaagaa---------aAACAGCagaagggaac--tctctaaacctaacaaaggccatctaagaaaagcctacagctattacagccggaagtaaaaggccgaacattttcagtttcctgaaaggcaggaacaaggcaaggat------cccattgcttcttttcaacattgtat-ggaaagtgtggccaaggaaagta---tataataaaaagaaattgaatgtca----- s rn2.chr14 78676644 217 + 107821284 aaaaagaaa---------aagaaacagaagggaacatgttctaaacctaacaaagggtgtctaagaaaagcctacag-tattacagctggaggtgagaggctgaccattttcagtttcctgaaaggcaggaaccacgcaaggatgtctgatccattgctgcttttcaacattgtac-tgaaagtgtggtcaaggcaactgcattatgataaaaagaaaCTGAATGTCg----- a score=9578.000000 s hg15.chr4_random 706589 84 + 1219494 atggaaagaaagaacaattattcactgattagattattttacatacagaaaatcccaaggaatccacttaaaaattattagaat s mm3.chr5 116898871 80 - 149719773 acaaacaaaaacaaaacctaagcaatgattacatggctttatgtagcaaaaattccaaggaag----ttataaattatcaggac s rn2.chr14 78677045 79 + 107821284 acaaacagaaacaaaCCCTAAGCAATGACTAGATGGCTT-ATGCAGCATAAACTCCAAGGAAG----TTAGAAATTATCAGGAC a score=143196.000000 s hg15.chr4_random 706960 2239 + 1219494 gaataaatgag--cagcaaggtggcaggatataagatcaacatacaaaaatcaattctatttctatatactagcaacaatccaaaaatgaaaggaagaGttagttcaagcgttcccttttccaggcagtctcccataacc--tctctggagtcctgtgtccctcccttggggctag---catagccttctctgcccctaacactgaccacactagttggtcattgtctCCCATCCTCAC---CAGCTCAGACCCAGCCCAGGGGGGACACCCAGGTAGCCCCAAAAGAAGGATGGAATGTT-CACCCTGTGGGTGACAGGGACTGCAAGTTGCCTGGAAGGCACAGGAAGCTGAAACAGAGCCCCTACCCTGGGGCATCACACCCCACTGTGCCCCCGCCACCCAAAAGCTATAAGACCTGGCCTGTGTGTCAAAGTGGGAGGAGCCACTGTGAGGACAGATGGAACCCACCACCTCCTCCTGGCTCCACACCTGGACAAGGCTCAGCAGGAAGAGTTACAGGGACAGGTTACAGTCCTACATGGGTCCAGCTCAGTGGCCAGATAGGGGCAGGCCTGTGAGGGGCTCGTTCCTGCCTGGCTGCTGTCCCGCTGTGGGCAGGATGAAGGCTCTTAGGTGATCATCAGCTGACCC--TGGGCAGGGGGACAGGTCATGACAAGGG-CAGGTCATGTGGCACCCTCACCTCCCCTGGGAAT-TCCTCGCTTCAGGGACAGACGCTGACACCCACAGCCCCTCTCCAGAGGAGGGGCCATTCAAGGGGAAACCCACCCCTGCCACCTTACTATCCTCTGCCCCACCTGGCCCTGCCCTGTGCCAGGGGGTGATACCTGGCCAGGAGCCCAGT-GCCAGGCCAGGCTGAGAGCAGAAAGGGGAAAGGTCGGCTGAGGCTGAGGGTGATGATGGGCCATGGAGGCCGTGGTGACCATGCT--------GCTCTTGGGGAAGTTCAGCCCAGCTCACAGAATCTGGCCCCACTTGTGCTCGGGAAAACCAGGGGGCATCCCCAAGGAGCACCC----------------------ACACTCCTAGCTGGCCAGGCCTCCCTGG-CTGTGCTTCTCAGTGCCCA-------GCCCCTCTTCCAGGGACCTGATGGTTAAATTCCATTCATTCATTCCAGGGGACTCCACAGGCCTACCTGCCAGCTC-----TCTGGGTGCTTCAGTCCCTTCCTCTGTAGAGGCAGACACCCTGGGGGGACCTGTCACCATGCTGCTGCGGTGTCGGCTGAGTTAACATGGGCAGGAGCTGTGAGGGAGAGTGCTGAAGATCTGGGTTCACATCCTTCCTGGGGCCCCTCCTTCCCCT----GAGCCCCCACCTCCTCCAGTGTAAAGTGGGTATGGAGGAGTCCACTCTCAGAGTCCCCTGACACCTCTGCAGCTGCTCTC-----------------TGGGGCAGGGCTCTGGAGACACATGGGCCAG--------CGTTGGGCGG-----------------------------------------CCAAAGC-----------------TGGTGGTGGCTGCTGGGCTCCATGAGCCCTTCCAGAAAGTATGTGATCTTTGCATGTGTGCACACGTGGAGATTTGCATTTGAGCCTGTACACTtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgCACATGCACATTAGGGAAGACGGGGCACCTGGGATACACTCTCCAGG-------TCTCTGTTTCTGTGCTCATCTCCCTACCTTC-----TCTCAAAGTTGCAATTGGTTCAGGTGACCCCAAGGCCTGAGGCTGCT-GCGGTGGGGGGCAGAGCAGTCAGGTGAAAAGTGCTCAGTCCCACAGAGACACCCCATCGGGTTCCATTTAATGCAGGCTCTGTGGCTCCCACC-ACCCTGGGGCCCCATGAGCCCTGTGGCGTGTGTGGTCATGGCCTGTGCAGGCCCTCATGTGCGCTGTGTCTCTGCACACCCAGTTAATGTCACAGGTGGTGCACTCACACAGGACGTGCACATGAGCTGCACA-----------GCTCGCATGCACACAGGCGTGAGCCCCTGCATAGGAGCAGGGTGGGGGCTCTGG----------------GAGGCTGGGCTCCTGCAGG-ATCATCCTGGCTGTGGTAAGGGAGCCAGCACCTCATGTGACCACAGGGTCAAGGACTTACTGTTAGTGGTGATCAGGTTGGCCCCATTTGTG-GGAGCCACAGGGCAAGTTGGGGCTGGGGATCCAGCCCAAAGG----------GAGAAGATACCA-GGTCACCCTGTG-CACTTTATTCACACGCTCATATATGCGCATCCTGTCACACTCATGCATGTACAGTTAACACTCACACC--ATCcaca-ctaacacatatatacacactcattctc s mm3.chr5 116898951 1972 - 149719773 taataagtgggttttgcaaggtagaagg------------------------------------atGTGCTAGCAACAAGTC-------TGGGAACAAATGAGGTTCAGCATTCCCTCTTCTGAGTA----CCCATGAATAGTAGCTG--GTCCTATGTCCCCAGCCTGGGGCTAGTGACCCAGCCTTCCTTCCACCTGACACTGGCCATAGTAGGTTATCACTATCCCCCAAACTTACTTAGCCTGCAGGCCCTGCCCAGAGTGGGAAGCCAGAGTGCCCAGAGTAAA--CTAGACAGTTGCTTCTGGTGGGTAGTTGGT-CTGAGGATTGT--GGA------AGGGAGCTGAAACAGAG-CCCTGCTCTGAT---------------------------------------------------GTCT------------GGAGCTGCTGCAAGGAAAGATGTG----CCTACCTCCCCCTGGCTGCATGTTTGGGTGGGGTTGGGT-GCAAGAGTTA-----AGCGGTTTCAGCCCCATCTTGTTTCAACTCAGTGGCCAGCAGGAGACA----------------------GCCTAGCTACCACCTTCCTGTGGGCAGAATGAAAGCTTGTGGGCGGCCATTGAACACCTTGCTGGAGAGGATGTCATG--------AGAGCCAAGTGATAC-TCTACTTCATCTCTCCTAGGAACGTTCGCACTT------CAGA-ACCGGAA-TCACAACCCCTCTCCAGATAA--------------------------------------------------------GCCCTGCCTGACACCAGGTGAC----CCTGCTCAGGAACCCAAT-ACCAATCTAAGCTAGGAGCAGAAAGAGGATGTGCCACCTGGG-----GGGTG------------GGAGGCGGTTACTACCATGCT--------TTTCCTGGAGAGTTTTAGCTCAGCCTACAGAGTCCAGCGCCACCTGTGCCTGGGAAAGCTGGAGAGAA--ACTAAAGAACTCCTGGCTCGCCTGTGAACAGAATGAAGACTCTTAGCCGCCCA---CTAACCAGACTAGCCACCTCAGTACCCACAGCACCACCCCGGACCCAGGGACCTAATAGCACAATTCAACTC--AACTGTCAGGGAA--------------CTGACAGTTCATGGAGCAGGGATGCCCAGTTCCCTTCTCTGTAGGAACAGCAACCTTGGTG----------------------------GGCTGAGCCACCGTGGATGAGAGTTTTGAGGGATAGTA-TGGAGACATAAGTTCAAACCCCACTT-GGCCCTCATCTTCCAATTAGGAAGTCCCTATC--------AGCAGAGGAGGCATGGAAGAGCCC--------AGTCCCCTGATAACCTAGCAACAAATCCCCTCCCTCTGTAGGAGGCTGGGGTAGCAGGGTCAGGACTCATTTGCTAGGCTCATTCTGTTTTGTGGATCCTTTTGCTTGTAGCTGCAGGCCTCTCCCCGGCCCCACACCAGACC--------TTTGCAAGTCAGTGGTTGTGGCTAAAGCCCATGAGACCACGTAGAAGGTGTGAGATAATTGTTTGCATGTGTGTATGTGGACATGCATTTGAGCCTGTAAGTTTA------------------TGTCTGTGCTTGCATGCACACCAGGA-AGGCTGGACACCTGCCACACATCCTCCAAGTCAAGTCTCTCTGCTTCTCTATACATCTTCCTCCCTCCCCTTCTCTCATAACTGGTCTTGATTCAGGTAACACTGTTTCCAGAGGCTGCTAGAGGATATGGACTGGGCCACTCAATAAAAACCACTCTGTGCCACAAAGTCAGCCAGAAC---------------AAGTTCTGTGGCTTGTGCCTGCCCTGGGACCCTGTGAGTCTGCAGAGGTGAGTGGTCATCACCTGCAAGGGTCCATACATTCTTGGTGGCTCTGCACACCTGGTTAACATCACAGGTGTtacattcacac--aacatacatgta---tgcacattgatacatgtgcatatatacatgcatatatGAGCCTATCCATG-------------------------------------AGCCCCCGACACCTGTGGATATGTCCCTGCCTATGTGAAGCAC-------------------------------ACTTATTCCT----GTGATCAAGCCGGACTGCTCTTTGTGAAGCTGCAGGGTAAGGCGGGGGTGGGGGTTCTAGCCCAAGG----------AAAAGGAAAGCA-GGTACCACTGGGGCACTT-----GTGCATACATATGTTCTCAT----GTACACACATATACACATAAT-----CTCA-ACTTAACCCTCATCTTACACATATACATGCACATATACTC s rn2.chr14 78677124 1923 + 107821284 TAATAAGTGGATTTTGCATGGTGAAAGG------------------------------------CTGTACTAGCAACAAGTC--------GGGAACAAGTGAGTTTCAGTGTTCCTTCTCCTGAGTAGTTGCCCATTACTGGTAGCT---------------------------AGTGACACAGC-TTCTCTCTACCTGACCCCAGCCATAGTAGGTCATCATTATCCCTCAAGCTTA----GGTTTTGGGCCCAGCACAGAGTGGGAATCCCCGGTGCCCCAAGTTAA--ATAGACTCTTGTTCCCGGTGGGTGTTTGGG-CTGAGGATTGC--TGA------AGGGAGCTGACACAG---CCCTGCTCTGAT-------------------------------------------------CTGTCT------------GGAGCTGCTACAAGGAAAGATGAG----CCAACCTCCTCCTGGCTCAATGCATGGGTGGGGTTGAGT-GCAAGAGTAA-----AGCAGTTTCAGCCCCATCTTTTTTCAATTCAGTGGCCAGCAGGAGAAG----------------------GCCCAGCTACCACCCTGCTTCGGGCAGAATGAAAGCTCGTAGGTGGCCAGTGAGCAACCT--TGGAGAGGGTGTCAGG--------AGAG-AGAGCGATAC-TCGGCCTCATCTCTCCCAGG--CGTTCTCACTTCAGAGACAGA-ACTGGGA-TCACAACCC--CTCCAGATGA--------------------------------------------------------GCCCTGCCTGACACCAGCTGAC----CCTGCTCAGGAACCCAATCGCCAAT-----CCAGGAGCAGAAAGAGGATGTGGCACCCGAG----------------------------GGTGACTACCGTGCTGTGCTAGAGTTCCTGGAGAGTTTCAGCCCAGCTTACAGACTCCAGCGTCGTCTGTGCCTGGGAAAACTGAAGAGAA--ACTAAAGAACTCCTGGCTTGCCTGTGGACAAA--GAAGACTCTTAGCCACTCG---CTGACGAG-CTAGCCACCTCAGTCCCCACAGCACCACCCCAGCTCCAGGGACCTAAGAGCACAATTCAACTCCTAAATACTGGGGAG--------------CTGACGGTTCGTGGGTTGGGGATGCTCAGTCCCCTTCTCTGTAGGAACAGCAGCCTGGGTG----------------------------GGTTGAGTCACTGTGGAGGAGAGTTTTGAGGGAGAGTG-TGGAGAC---AGTGAAAAGCCCACCT-TGCCCTCATCTTCAACT----GAGTCCTTAGC--------AACAGAGGAGATATGGAAGAGTCC--------AGGCCTCTGA-AGCATAGCAACAAATCCC--TCCTCAGGAGGAGGCTGGGGCAACAGGGTCAGGACTCATTTGCCAGGTTCACTGTGCTTCGTGAATCCTTTTACTCGTAGCTGCAGGCCTCTCCCCGGCCCCACACCAGGGCTGTGGATATGTGCAAATGAGTGGTTGTGGCTAGAGCCCATGAGACCACGTAGAAGCTGTGCAATCCTTGTTCGTGTGTGCATGTATGGACATGCATTTGAGCCTGTACGTTTA----------------------TGTGCTTGCATACACACCAGGG-AGACTGGATCCCTGCCACACATTCCCCAAGTCACGTATCACTGCTTCTGTGTACATCTTCCTCCCAGCCCT--TCTCATAATTGATCTT-ATTCAGGGGACCCTGTTTCCAGAGGATGCTAGAGGATACCGACTGAACCACCCAATAAAAGCCACTCTGTGCCACAATGGCAGCCCGAACAATTTCA---GAGGTAAGCTCTATGGCTTGTACCTGCCTCGGGGCTCTATGAACCTACAGGGGTGAGTAGTCATCACCTACAA-------------------GGCTCTGCACACCTGGTTAACATCACAGGTGTTACACTCACAT--GATGTACGTGTA---TGCACATTGACACATGTGCATACATACATGCATATACGAGCCAATACATGAACTCAGGGTATAGCCTATGAAGCTCTGGGCTCTGACAGCCCCTGACACCTGCAGATATGTTCCCACCTGCGTGAAGGAC-------------------------------ACTTATTCTT----TTTttttttcttttttctttttttcggagct-------------------ggggaccgaacccagggccttatgcttgctaggcaagcgctctaccactgag-------------------ctaaatcccca-----------------acccATGAT-----CTCATACTTAACCCTCATATGACACATACACATGCACATATACTC a score=4184.000000 s hg15.chr4_random 709199 68 + 1219494 ccgcatgcccactcgctctcatgttctcataca------------------------cactcatgcactcatgtctactcatacgtgcacac s mm3.chr5 116901273 73 - 149719773 TCTCATAGGAACTGAACCACACATCCAGACACAAT-------------------AATCACACATGCACACATACTTATTCATGTGTTCAGAC s rn2.chr14 78679425 92 + 107821284 TCTCTTAGGAACTGAACCACACATGCATCCACAATCACACATACCTACAGACACAATCACACATGCCTACATACTGTGTCATGTGTCCAGGC a score=820.000000 s hg15.chr4_random 709267 16 + 1219494 tcacacccatatgtat s mm3.chr5 116901542 16 - 149719773 taatacatatatgtat a score=190162.000000 s hg15.chr4_random 709283 2317 + 1219494 actgatataca----------------------cat------------------------tcatcacactcactcatgcatatgcaagcactcattcacaca-------------------------cacacaGCCTCCAACGACCAA------------CA-AGACCTGTCAAG-------TGCGGTCTTCTGTGTCTCC---------GTGTCCTGAAGCCTGAGCACAGAATCATCACCACCACTCCCAGCCCtgccagggcccagtgccaagctgtacctcacagctcactaaatcgaccagggtc--cacctgagctcaa----tactttacttctattttacagacttgggtatagaggctgggagaggatcaggccttgtgccgagcgcacTGGGCACTCCCTGTGGGCCAAGCTCTGTGCTTCTCAGTGATCGCCC-----CATCATC-CAACACCTTGAGCTTCAAACCAGAGTCCTCCCCAAGTCACTGACGaagaaact--tggccaaagtcacacagccagtaaatggtggCTCACGCACCACCCCCGGCCCAGCA--CAGCCACGGCCCAGCTTGGCGCACAGTGGGT-GGCCGGTGGTGGGCGTGGGATGTGCAGATGGGGCGGCTTCC-ACCTTGGAGCCC---TGGCTGCCCTGCCTCCCCACAGCTGTCTG-CTCTTCCTTTTCGGTTTCCCTTGTTTCCTTCCTGTTCCCAGAATCTTTCTCTGTTAACATAATCAAAACCAAAATTCTCCCGTAAAGGCCCAGTAACCAGCTATGCCAGAGAAGCACTGCTGGCCAGGGG---CAG------GGTGGCCCAGCCTG--GGCTCTGCGAGCACAGCCCCAGCCCGGCAG-TCCCTGAGGTCCCTGCGGGTCCTCCAC---ATTGCAGGTTTCAGAGCATGGCACTCCCCAGGTGGGCAGCAGGGACCTTGTACAGCTCTCTCCGT----------------------------TACCCCCCCACA---ACAGAAACACACACTCACATACACA---------A-----------------------------------CGTGTGTACTTAGGACCCAAACACCAAGG-CCACCCTGCAGGCTGTATCATGAGAAG------TTCCCGGACCTGGGCCCCA-CCCCAGCAGGCTGGCCCC---CGCCTCCCTGTCGGCCGCATGTGATGGG-----------GGGGTGGGGGGGGT--TCTAAGTATCACATTCCCTCTCTGGCCTCCCCCTGTGCCTGCCAGCTC----GGGGGCCTCTCAAGGCAGACAGAGGCCACTCTCCTCAGAGCCTGTTGCCTTTTGCAGGCTCAGGGCCACCTCC-TGTGGGCTCCCACGGCCAGCCCCGAGGAAGGC----TGTGG--CTCCCACGTGGGGCCCCCTTAC-------TGGTTCTTCAGGTGCTAGACCAGTGCCGCCTCCCGAGCCCCAGTCCTGGGGCCGCCCCACTGACCTGATGGTGCTGACCCAACACATGGCCCTCCGTCCTCGTGACCTGCTCGGGGCCGGTGTCCTGGGGCCCAGGGAGGCCATGCGGCTCAGGGGCCACCAGCCCAG---GCAGCCTACATCTCCCAGACATGTGAGGCCTGACGCGCCTGGCTGCCC----CACAGCTGTGCCCACAGCTCACTCCTGC-TGCTTCTG-AGGC--------CTGTGGCCGCCGGTGCTTCCTCCCCACCCGGGACTTCCTGTTCCCTGCTCCCTGGGCAGCACCAAGTAGCCGGCACTTCCTGCCTTCTACCCTGTGAGGTCCTGAAAGCTGCCTGGGGCCCAGGGCTGCCCC-TCATCCACCATCCGGGTTTTAACTCCTACCTTCCACTGCTCCTGCCCTCCCATCCTGTGGTCAGAGGCCAGGGCTCTCTGGCTCCAGCGCAAGGTCAGCTGCATCCCTGGGAGGAAGCTCCCTGCTG--CCTCC---------CCGCAGGGCCACCTCTGAATACTCGGCTTCTCCCTAGCAAACCATGAAACAACCTGCACCCT-GGGTGTCAGGCCCAGCACAGAGCAGCATTTACAACACACACAGGGATGGTGTCACCTTACCAGCATGCTCTTCCTGCCAGGGCAGCTGCTGCCACCCTGCTCTGCCATCTGAGGCCACACAGAGGGCTGTTATGTCTTGCACCC-GGTTCTATGAATTTCAAGGTGGCCATCTCTGTGCCCTTTGACACCAAGGGACTGAGGGACTAG------GCCTGGGCT----CTGGCATTCCTCGATTCCTACTCTATCCCCAGCCTTTTCACGTCCCCGCAACCACACCAGCTCTGCTAACATCTGGTTTGCTAGAAAGTA--CATTATGGCTGAGTGGC--------AAAGCACGCTCCCG-TACTCACCGGCCCCTGCCCCAAGGCCCGCTCAGAATTCGGCCCCTCCCAGGGCTGCTCTGCCCCCACCAAGCCCAGTGCC-----CTGCCCAGGCCCAGAGCCCG-GAAGCAGGGAATGGGGATTCTAGCCACTGGCTGCTGAGCGCC-CTCCCTCTCCTCC-CAGAACTTGCCCAGGGAGGACAGGACCCCTGGGCAG-----AGGCAGCTGGAGAA---AGGG s mm3.chr5 116901558 2256 - 149719773 atatacatatatatacacacataATTAAAATGACAT-TTTTTAAAAAGCATAAACGCATGTGTTCACACTCACACATACTTACACAAGTGCTTGATGACACA----------------TTCATACCATACATATATGCAAATCACCTAGATATTCACACTCATATACACACAAAGACACACTTACAGTCTCCTAAGACCCTTCATGGATGGTCCCTAGAAGCTAG-----------------------CCTGGCCCTGCC----------------TACTCCTTGACTGCTCATCAGCCTTGACAGGGTG----CGTGAACTCAGGCTTTGCTTTGc----actttacaggctaggacactgaggctcagaatggctcaggactt---------gcACTGGCCACTCCCCATAGGCCAGACTTGATGCTCTTCAGGGACCAACCCA---CATCATCACAACACCCTGACATGCCAACCAGGGCCATCCCCATGTCACCAGTGAAGATATCCAGGGTCAAAGA-----AGCCAACAA-------CTCATCCAAAGCTGCATGCCCAGTATTCATCCA----GCAAGTCAGAGCACTCTACCCCTCCCCAC-------------------------GCAGCCCAC-ACCTC---GCCCCTGAGGCTGCCCCAGCTCACAAGATCTCACAAGCTCTTCCCTCTTAGTTTCTCTTTCTTCCTTCCTCTTCTCAGAATCGTTCTCTGTTAG-AAAATCAAAACCAAAATTCT---AGAAAGGCCCAATGACAAGTCATACCAGATAA-CATGGGGGGCTGGGGGTGACAGCCACAGGGTCTGCAGCCCTGTCACTTTCACAAGGACAGACCCCTACCGTCAGGTTTCTGAGG--CCTTGGGATTATCCACTTTATGTGAGAACCTTGAGCACAGCACTCTCA-TACAAGCAGCCAGGACTTCTCA-AATCCTCTCAAGTGcacatg--------------------cacacacacacacacacacacacacacacacacacacacacacacaAGCA-----------------------------------TGTGTAGACACAGAACCT-AACCCCAAGA-CCACCC--CAGACAGGGTTTACAGTAG---------------CTGGCCTTCTACTCTGGCAAGCTGTCTTC---CGCCTCCCCA-CAGCTGC---TGTTGGGTGACAT-----GAAGTCTTAAGAGT--TTTAATGGCCA-GTTTCCTCTCTGGGCTCCATTTGGACCATTCAGATAGATATAGGGGCT----AAGTTGATAGAGGCCAATCTCCTCGGAGTTTATTGCTTCT------CACAGGACTGAGTCCCAATCAGTCCCTAC-CCCTACCCTGGTAAGGGC----TATGATCTTCCCTTTCCTCTCCCCCACCCCCGCCCCAAGTCCTGCAGTGGCTAGGCCAGAGTCATCTCCAGAACCCC-----------TGTTCAACTTACCTCATGGCACTGACCCAACACATGGTACAACTTCCT-GTGACCTGCTGGGGACAGGTGTCCTTAAATCCGGAAAGGCTATTCAGCTCAGGGGCTATGAGGAGGGACTGCAACCTGCATCCCCCAGACATGAGATCCTCAAGGCCCCTGGCTGTTCCCAGCACTGCCGAGCCTGCAGAGCAGTGCAGTAGGCTTCACGGGGTGGGGGAAGCTGGGGCCAACAGGGTTTCCTCCCTGTTTGGGACTTCCTGTT--------ACTGGGCAGTCCCAAGGAGAAGGCGTTTTCTAACTTCCCCACAGCAAGGTCCTAAAAGCCACTTGGGGCTCAGCGCAGTACT-CCAGCAGCCTGCTGGGTTTTGGCCACTGAGGT--------------------TACTCAGTTCTGGGGCCA--GCTGTGTGGCTACA------------------------GAGATAGCTTCCTGTAGAACTTCCTGGCCAGAGTCTCAAGGCCAACTCA----------------GCTATCAACCCATGAAGCCCCTCACAGTTTAGGGTGTCTGGCCTGAGGAAGA-CGGTGCTGATGTCTCCCATTGGGAGCTCGTTCCCTCAACAATAGGCTCTTCCCTACAACGTATATACT-----------------------------CAGA-----GCTGTGCCTTGCACTT-GTACCTGTGACTTTTAAGAT-GGTATTTCTGTGCCCTTTGACTCCAAGAAACTGAGTGACTAGGAAGGAGCTTGGGCCCAGACAGACATCAGTCTCTTCCTA-------CAAGGACACTTTGAGTCACCTC-TCCACCTCAGCTCATCTAACATCTGGCTTTCTGGAAAGCAGCCTTTATGTCCACATAGCCTCAAGGACAAGCACACTGCTGTTGTTCTAGGGTACCGGCCCAGTGGCTCACTTA--AATAAGCCCCTCCTGAGCAT-TTCTGCTCCCA-CAAGCCCAGCGTCTTCACCTGCTCTATCCCGGAAACCACTAAGTGGTGAAGCAGGAGTTCTGACCCCAGCCACTGAGTACC-CTGCTCCTCCTTGTCTGAGC---CCCA-----------ATCCCAGGATAGGAA--GAGGTGATGGAAAGGGGGGGG s rn2.chr14 78679709 2288 + 107821284 atatacataaa-ataaataagtaaaAGAAATGACATATTTTTAAAAGCCATAAATTCATGTGCTCACACTCACACATTCTTACATACCTGCTTGCTCACACACGCGTGCTAATATACATTCGTACCATACATATATGCAAATCGCCTAGATATTCACAC-CATATACACACAAAGACACACTTACAGTCTGCTAAGACCCTTCATGGGTGGTCCCTAGAAGCTGG-----------------------CCTGGCCCAGCC----------------CACTCCCCAACTGCTCATCAACATTGACAGGGTGGGAGCATGAACTCAG----TGCTTTGT----ACTTTACAGGCCAGGACAATAAGGCACGGAA-------GGGCTT---------GCACTAGGCACTCCCCATAGGTCAGACTCTATGCTCTTCAGGAGCCGACCCAGATCACCATCACAACACCCTGATATGCCA-------------------------------------GGGTCCAAGG-----AGCCAACAA-------TTCATCCAAAGCCACACGT--GGTAAACATCCA----GTAAGTCAGAGCGGTCTAGCT-TCCCTAC-------------------------CCAGCCCACTGCCTC---ACCC--GGGGCTGCCCCAGCTTACGCTGCCTCATAA-TTCTTCCCTCTTAGTTTCTCTTTCTTCCTTCCTCTTCCCAGAATC-TTCTCTGTTAG-AGAATCAAAACTAAAATTCT---AGAAAGGCCCAGTGACCAGTCATACCAGATAA-CCCGGGGGTAGGGGGAGGAGAG------GGTCCCCATTGCTGTCAGCTTCACAAGGACAGCCCCCTCTGGTCAGTTTTCTGAGG--CCTTGGGATTACCCACTTAATGTCAGGGCCTTGAGCACAGCATTCTCC-TACAGGCAGCCAGGACTTCTCA-AGTCCTCTTGAGCCCATATGTGTGTGCACGCATGCCTGcacacacacacacacacacacacacacacacacacacacacacgcacacgcacacgcacacgcgtgcgcgcgcacacacacgcacaATGTGTAGACACAGAACCT-AATACCAAGAACCACCC--CAGACAGGGCTTACAGTAGGAAGGGTTCAGAGGCCTGGCCTTCT-CTCTGGTGAGCTGTCTTCTTCCTCCTCCCCA-CAGCTGC---TGTTGGGAGGTATATAATGGAGTCTTAAGAGTGTTTTAATGGCCA-GTTTCCTCTCTGGGCTCTATTTGGTCCATTCAGATT----TAGGGGCT----AAGTAGACAGAGGCCAATCTCCTTGGAGTTTATTGCTTCT------CACAGGACTGACTCC-AATC----------CCCTATCCTGGTAAGAGCGATCTATGATCCTTCCTCCCCCTGCCCCCACCC-------AAGTCCTATAGTGGCTAGGCCAGTACCACCTCCAGAAGCCCAAATCCAAAGCTGTTCAACTTACCTCATGGCACTGACCCAACACATGGCACAACTTCCT-GTGACCTGCTGAGGACAGGTGTCCTTGAGTCCAGAAAGGCTATTCAGTCCGGGGGCTATGGGGAGGGACTGCAACCTACATCCCCCAAGCATGAGATCCTCAAGGCCCC-AGCTGCTCCCAGCACTGCCTAGCCTGCAGAGCAGCTCAGTAGGCTTCAC-GGGTAGGGGAAGCTGGGGCCAAGAGGGTTTCCTCCTTGTTTGGGACTTCCTGTT--------AGTGGGCAGTCCCAAGGAGAAGGCGTTTTCTGACTTCCCCACAGCACGGTTCTAAAAGCCACCTGGGGCCCAGGGCAATACTCCCATCAGCCTGCTGGGTTTTGGCCTCTGAGTT--------------------TACTCAGTTCTGGGGCCA--GCTGTGTGCCTACA------------------------GAGATAGCTTCCTCTAGAACCTCCTGGCCCAAGTCTCAAGGCCAACTCA---------------CACTATCAGACCATGAAGCCCCTCACAGACTAGGGTGTCTGGCCCAAGGAAGA-CAGTGCTGATATCTCCCATTGGGAGCTCATTCCCTCCCCATCAGACTCTTCCCTACAAGGCACATACT-----------------------------CAAA-----GCTCTGCCTTGCACCTAGTACCTGTGACTTTCAAGATGGGTATTTCTGTGCCCTTTGACACCAAGAAACTGAGAGGCTAGGAAGGAGCTTGGGCC----CAGACATCAATCTCTTCCTA-------CAAGGACTCTCTGAGTTACTTC-TCTGCCTCAG-----CTAACACCTGGCTTTCTGGAAAGCATTCTTGCTATCCACGCGGCCTCAGTGGACAGCACACTGCTGTTGTCCCAGGGTTCCTGCCCAGTGGCTCACTTAG-AGTAAGCCCCTCCCAGATAT-TTCTGCTCCCA-CAAGCCCAGCTTCTTTATCTGCTTTATCCTGGAAACCACCAGGTAGAGAAGCAGGAGTTTCAACTCCAGCCACTGAGTACCTCTGCTTCTCCCTG-CTGAGC---CCCA-----------ATCCCAGGGTAGGAAATGGGGGGATAGAAAATGGATGG a score=159649.000000 s hg15.chr4_random 711600 1968 + 1219494 GCTTTCTGGGGCCTGGGGCCACCCTCACAGCAGGATTTGAGGGTGACAGAGGCCACAGAGCACAGG---CCACAAAGCTGCAGGGGTCTCATCTTGCCCGCCAGG------------CTTCCTAGGGCACGGCCCCCCGAAATCA-------GCCT----------CCCAACAAACCCTGGACCCCAGCCCCGTAACCGGCTGTGCAGGTCCCAAGCTGTCC-----CATA-GCCTAGGTGTCGGGTCACTCAAAAAAGGCAGCTCCCAGGCTAAGGAGCTCC-GTCTCCCCAGCTGTGTCTGCAGCCCCAGCCCTGCTGCCAAGGTCCCCCTCGGGGCC----------CGTTTGGGCTGCAGACACCCCACTGTCTCCTAGAGGGTGAGGAGCTTGGGCTTTTAGGTCTGGGGCCTCCTTAGCATGGGCACAGACACCCTGGCGTCCCCAGCCTGTGCCAGCCTCAGTCCCCTCAGGTGGCCAAGGGCAGACCACACCTTCAGCAGAAGGCTGGCCACAGCAGGCAGACAGACAGAGGGCAGCGAGGAGGGCACGGACA-GAGTGG---------GGCCTCTTCCCATTCTCTTTC-CTCCTTGCAGGAGGGTTGAGATCAAACAGCAGGTGAGGAACCCCTGGGCCACTGCCCAGCCTGGACGATGAGGCAGGCAGTTCTGACAGTTGGGGCTGCAGGGTCCAGAGGA------GGGACCAGGCCCTGTGGGTTCTGGA------------CTGGGGAACGCCTCCCAGAGGAGGGGCCCAGCTTTGATAGAGGAGGAAGTTTGCTGGAA-GGAGCTGGGGTGAGGGAGCCACGGGAGGAAGGGGCTTGGGGTGAGCA-CACCCCAGGGTTGGGAGGAATCCACAGGCAATGAGGTGGCCAACGCACAGCTTCAGGGATGACAACCCATGAAGATAAGAACCCA----------------GAGGCAGCCGGCGCTCTCAGGAACACGCCACCCCTTACTGGGCAGGCAAATGCAAGAGCGGACAAGGCCTGAGCTGGAAGCAGGAGCCAGGCTCGC-CCCTGCCCTTGCTCCGCCAAAAGCCCCACACTCATAGACTCGGCAGAGGCAGAAGCAAGCAGAAGACCCACCTGACCCTGGCCCAGGCCCATTCCCCCCACAGCCCTGGTCCAATGCTGTGATGCTACAGGGGGAGTCCAGCCCAGAGGAGAGGAGCAGGCCAGGTGAGGGGACCCTGGGGGTGGGGGACAAATCCACACCAGCCCCT-TCCCCAACCCTATCTTCCCAGAGGGAAGCTGGAGCTGGGAGTCCTGGGCTGCTGGGTGACCTCTGCAGACCCCTCCTCTCTGGGCCTTAGCTTCTCCAATTGCTCTCTCAATTCCTCTTCATCCCTGCGGCATATGACACTGCCGTTCATATTCCTAAACACAG--GCCATTCTCCCCTCCTCAGCCATGGCCACTCCTTGACATTTACCCTGTGCCGGTAACCATGGAGATGACCCCACGCCTGCATCCAAGCAGGGGGTGTGTGCAGCGGGGCATGGCCGGGGCCGCCTCAATGGGCAGCCCTGGTGTCCCTCTCCATCCTTCCCAAGTTGCAGCTG-CTCCCCTGC---------------CCCTGAGCTGGTGCCTCAAACTGCCAGGCTTGGGGACTTCC-----CACCATGCCAGACACAGGGCACTTACCAGGATGAGTGGGAGCCAGCCAGCAGGGC-AGGCAGAGGGCCAAGGGTCAGCCTGAAAAAGAAGAGGGAGGGAGCTTTCACTG------GGTTCTGGGAGCCTTCAGCCCGCTCAGGAGTAAGGCAAACACCCAGCACAGTGGGTGGTGTCTGCAGCCACCACGGAGCTGACCCTGCCCTGGCACCTCCTGCCTCACGGCACCTGCCTCATCTCAAGGCTCACAGCCCAAGAGGACAGTCCTGTTGCCATCTGCATCT--CTGGGGTTCA------------GAGAGGA-----AGCTAGGGATCAGTGGCATGGG------------GACTGGCACCCAGGGACCCTGTACCCAGCCTGGTACCTGCTTGCCACCTTCAGGAGAGGCTCAGGTGCTGAACATGCCAA---------GGAGGGTCTGCAGA s mm3.chr5 116903814 1812 - 149719773 GTCCTCTGAGATTGAGGGCCAACCTCATGACAGGACT-----------GAGTTCAAAGACTACAGGGTTACCAAGAGTTGTAGAGTCTCTACTTTGCCCAAGAGGTTTTTATGAGAGCACCCTTCTCCCTAGCTCCAGGGATTCACCTCTCTGCCTGTGGTTCTCACTCCAATGGCCCTGAAGATCAACCCCATGACTGGTTGTGCAAGTGCCTAACCATTTACAGGCACAGGCCTGTGTGTC-AACCACTCAAAAAGGGCAGCTTGCTGATGAAGGAGCTCCTGCCTTCCCAAT---GTCTGCAGCCTCAGCTCTGTAGCCAAGATCTCC----AGGCCATCAAGGTGGCCACTGGGCTAAAGACTGCTGGTTCTCTCCTAGAGAGTAGACAGCGTCATCTCTGCTGTCT-GGGCCTCCTTAGGGTGGGCACAGATACCCAGCCTCTCTAAGCC---ACTAGGCTCTGCCC---------GCTGAGGCAAGTCCCTGCCTGCTGCAGAAAGCTGG-----------------------------GGGCAAGGTGTGAATACAGATGT----------GCCTCTCCTCACTGTCCTTCTTTCCTTTTAGCAGAGCTGAGCTAAGGGGGCAGGTGAGGAGC------------------CCTGAAGCATGCAGCACTGAGTACAAACCAATGGA---ACGGTTTCCAGAGGACACGGGGTATCCAGGAGCTGTGGGCTCCGGAGGACGTGTGAGGCTCAGGGAGATGCCCTGGAGGAGAGCCCTAGGTCTGA-------------TTTCTAGAACAGAAACGGGCTGAAGGAGTCACACTAGGGA-GGGCTCAGGGTGAAGAGCATGGGGGAGCTCAGAGGACTCCTCAAGCAATGAGA-AGCCAGGGT----CTCCGGAGACTAGGGACAGAGATGATTGAATCCCAGCAGGAGAT-------GAGCCACCCAGCTCTCTAAAG-ATATGTTACCCGTTAC----CAGACAAATGGAAGGCTAGATACAACCTACGGCAGAGGCATGCACCAAACCTATGCCCAATTCTTGTT-----------CCCACACTCCT-----------------AAGTGAGC------CACACCC-ACCCTGA-------CCACCCTAACCAGGTCTCCAACCCTAGGCTCTGAC-CTGTA----------AGTCTATAAGAGAGTCAGAGCCCCAACAAAGGATTCTC---TGCAAGAAGCAGACCAGTATTGGACCCT-CCCCTAATCCCAGCCT------------------CTAGGAGTCCTGAAGTAT---GTAACCTCCACA---------------GGCCTCAATTTCTCCAAGTGCCTTCTCG---TCTAGTCA-------AGTA-ATAACACTACCAGTCATGTTCTTGAAAACAGAAGACATTCAAGACCCCTCCATGAGGGTCACTCCACCACCTTCACCTTGTGCT-GCAAT-------GTGAAGTAACACCAGAATCCAAGCAGGAGG-----GCATATA-ATGTGGCTGGGG---------TGAGC-----------------CTATCCTTACCAGCATTGGGCTGCCTTGACTTC-------------TACCCTGGACTGGTGCCTTAAGTTCTCAAACTTAAGAACCCTCACCCCTATCAGACCAGACTCAAGGAACTTATGAGAGAAGGTAAGAGATAGCCAGCAAAGCTAAGCAG-GGGCTCAGGGTTAATCAGAATTA-AAACGACAAAGAACTTTCTTTCACTCA-GGTCCTGGCATGCCTCAGCCTGTTCAGGAGTGAGACGAGCACCTAACAT---------TATCCAAAGGGCACCAAGTGCTGGCACTGCCCTGGCACCTCAAGCCTGA-------------------------------GAAGAGGCTGGCCCTGCTGACATCAGTGGCGTACTGAGATTTGGAAGATGGCACAGATATGACCCACAGCCAGGTATCAGTGGTATTGGATTGAAACCCACGTCTAGCACCCAGGACC-CTGTACCCACTCTGGTATCTGCTGACCACCTGTCTGCACAGCTCAGGCATTGAGTGTGCCAAGGGTAAGGAGAAGAATATTCCAG s rn2.chr14 78682202 1734 + 107821284 --TTTCTGAGACCAAGGGCCAACTTCATGGCAGGACT-----------GAGTTCAAAGACTACGGGGTTCCTAAGAGTTGTGGAGTCTTTACTTTGCCCAAGAGG-------------------CACCCCAACTCCATGGATTCACTTCTCTGTCTGTGGCTCTGACTCCAGTGGCCCTGAATACCAACCCTATGACTGGTTTTGCAAGTACCTAACCCTTCACAGGCACAGGCCTGTATGTC-AGCCGCTCAAAAAGGGCAGCTTGCTGAAGAAGGAGCTCCTGCCTTCCCAAC---ATCTGCAGCCTCAGCTGTGCAGCCAAGATCTCC----AGGCCACAAAGGCGGCCAGTGGGCTAAAGAGCCCTGGCTATCACCTGGAGAGTGGAAGGCCTCAGCTTTGCTGTCT-GGGCCTCCTTAGGGTGGGCACAGATCCCCAGTCTCCCTAAGCC---ACTAGGTTCTACCT----------CTGAGGCAAGTCCCTCCCTGCTGCAGAAAGCTGG-----------------------------GGGCAAGGCGTGAATA-GGATGTGGAAATGCAGGCCTCTTCTCACTCTCTTTC-TCCTTACCAGCAGGGCTGAGCTAAAGGAGCAGGTGAGGGGC------------------CCTGAAGCATGCAGCAATGAGTACAAACCAGTGGG---GCAGTTTCCAGAGGGCACAGGGCATTTGGGAGCTGTGGGCTCCAGAGGACATGTGAGGCCCAGGGAGGCTTCCTGGAAGAGAACCCTAGGTCTGA-------------TTTCTAGAACAGAAGTGGGCTGAAGGAATCACACTAGGAA-GGGCTCAGGGTGAACAGCATGGGGGAGTACAGAG---------------GGGG-AGCCAGGCT----CTGGGGAGATTAGGGGCAGAGAATATTGAACCCCAATAGGAGACGAACCAGGAGCCAGCCAGCTCTCTAAAG--TATGTTACCCCTTGC----CAAACAAACGGAAGGCTAGATACAGCCTAAGGCAGAGGCATGCACCACACCCATGCCCAGTTTTTGTT-----------CCCACACTCCTCAATGCAATAGAGGTCAAAGTGAGC------CACACCC-ACCCTGA-------ACACCCCAACCAGGTCTCCAACCCCAGGCCCTCAC-CTGTA----------AGTCTGTAGGGGAGACAGAGCCCCAACAAAGGATT---------------CAGACCATTGTTGGACCTTCCCCCTAATCCCAGCCT------------------CTAGGAGTCCTGAGCCAT---GTGACCTCCTCA---------------GGCCTCAGTTTCTCCAAGCGC---------------------------------------------------------------------CAAGACCCCTCCGTGAGGGTCACTCCACCACCTTCACCTTGTACT-CTAAC-------GTGAGGTAACAGCAGAATCCCAGCAGGAGG-----ACGGATGTATGTGGCTGGGG---------TGAGC-----------------CTATCCTTACCAGCACTGGGCTGCCTTGACTTCCACTCTATCCTCATACTCTGGACTGGTGCCTTAGGTTTCCAAAGTTGAGAACCCCCACCCAAATCAGGTCAGACTCAAGGCACTTACCAGGGAAGGTAAGAGATAGCCAGTAAAGCTAAGCAG-GGGCCCAGGGTTAACTAG------------CACAGAACTTTCTTTCAGTCAGGGTCCTGGCATGCCTCGGCCTGTTCAGGAGTGAGATAAGCACCTAACAC---------TACCTAAAGGGTACACAGTGCTGGCCCTGCCCTGATACCTCAAGCCTGA-------------------------------GAAGAGGCTAGCCCTGCTGACATCAGCACCCTACTGAGATTTGGAGGATGGCAC-GATATGACCCACAGCCAGGGATCAGTGGTATCGCATTAGAACCCACTTCAAGCACACAGAACCTCTGTACCCACCCTGGTATCTGCTGACCAGCTGTCTATACAGCTCAGGCACTAAGTGTGCCAA-------GAGAAGAATATTCCAG a score=1620.000000 s hg15.chr4_random 713568 40 + 1219494 GCTCAGGGAGGGCACTGAGTCCAGGGGAGAGAGGGAGGGC s mm3.chr5 116905626 40 - 149719773 GCTTGGGATGGCTGCTAAGCCCTGGGAAGGGTGGGAGAAC a score=9849.000000 s hg15.chr4_random 714042 424 + 1219494 GGGTGGGCACAGAGCCTGGGGGAAGGCGGGC--ACCCCCAG-GGAAAATCTCAAGCTCTCAAAATAAGATGTTTTGCATGAGCCCCTCCCATGGGGCCTGGGTCCGCTCCACAGCCATCCCTGGGACCCTCCCA---GGCTCTCCCCAGCCAGAAGCCCCTTCCC---TCTATGCCCCATTCTGATTGCTGTCCCATGATGCAGGACTGGGAGGATTCCCGGGAACTCGG-ACTGGGCACTACCCAACTGGGATAGAGGGAGAGGGAACCCTAGAAAGAAGGACCCTGCCTGGGGCCACATGTtgtagtgggctgaaaggtggcccccaaaagctttgtccacatcctaatccccagaacctgtgaacacgaccttatttggaaaaagggtcttcgatgtaactaagttaagcagcacatcctggattgaccaa s mm3.chr5 116905631 381 - 149719773 GGATGGCTGCTAAGCCCTGGGAAGGGTGGGAGAACCACCAATGGACAACCTCAACCTCTCAAAATAAGATGTTTTATATCAGCCACTCCTATGGGACTTATGTCCATTTCTCTGCCAGTC-TAAGGCCCACCCATCCGACCCTCCCTGATCTGGAGCCCTCTCCCCTTTCTGAGCCCCATGCTG----CCACTGCACAATGAGGTCCTTCGAGGATTCCCAGGAAGTCTGTCCTGGGC-----------------GATGGAGTGGGTGGTCTGGAGAGCAAGGTGTTCCTCTGAGTCATATGGTACCGTGGTCTAAATGACAGC--------------------------TCCCTGTAACCTGTAACCATAACCTAGGTTGGAAGA-GGGTCTTACATGCAATT----TAAGGTTCCCATATTGGATTGGCCAA a score=121271.000000 s hg15.chr4_random 714652 2043 + 1219494 -------------cacagccctgtagacccctcagctttggacttctggcctccagaatcatgagag--taaatttctgttgttttcaggcccctcgtgtgtggaactttcttagggcagccccaggaaatgaatccaCACGGGGACTCACCTGAGTCCT--------TCCCCAGGATGAACTGCAGGCTCCACTTAGTCTGATCCCGAGTGTGGGCGTGCCTGTCAGGGAGAGACAGGCTCCACAAGGCTGTGACCAACCTGGGCGGGCACTGCTGAGCTTGCCTCCGCAGTGCCCACAGCCTCCCGAAGGCTGGGCTCTCCACCTCCCACC-CTCCTGCACACAGGGTCCACCAGCCTCACCTGCCATGCCTGACCCACACCCGCCAGGCTTGCTG-ACCCCACCTCCTGGCC---TCGCGTTCACCCCTTTGGCCTGCCCTTCCTTGTCTCAGGCCACATTCACCACGGCGCAGCAGCGAGGTTGGTTCCCTGTCCACGTGGATGGGGTGCGGCGCCTGCTTTCCCTTCCTGCCCTGGGCCCCCGACACTGGACCTGTCATGCACTTGCCCCATCCTGGTACCTGCAGTCACCTCCACATGGAAACCAAACGCTCCCTCATCCTTTGAGGATGGAACCATCTAGAACCTTGCCCTCTTCTCTGAAATCTCCAAGTCAATGGCACAGTTCTGCCACCAGCATTACCCCAT-----GTGTCCCTGGCACTCCCCACGGGTCCAAGTCCCACTGAATCTCCAAGGCCCAGATGGGCACCAGGCCCATGGCAGGACCCAAGAGAAGGACA--GACAGACAAACAGATGAGTTCACTGTCATGTCCATACATGAGGCCAGACCCCAGCGAGGTTGTAACCAGTACATCCTTCAGAGCTCAGAGTGAAAAAATTGTGACTTAGCGCTAATTGGAC---TCTCAATGAGAGAGGTTTTCAAAGAACTGGAGTGCAGCACGGCCGCAGCTGAGGCCCTTCCACACCCCTGGACCTCTGCCCAGTGAGACAAGCCGCCGGCCAGCCCTGGGCACGCACGTGAGGCTGCTCGCTGCAAAACAGAGAAAGGCTGGTGCACTGGAGACAGCAGTGTTCCCAGAAGACGCAGTGTGTTCGGGGCTCAGAGGCCCCAGGGGCTTCACAGAGCGGTGCAGGGTGGAGGCAGAGACGGTCAGGCCACTGCTGTGTGCAACGGACAAAGGGAATTAAGAAAAATGCAGACAAGGGCCCTGTAGGCACAGCTGCCTGCATGGCACCTGGGCTTCAGAGAGCAAGGCCAAGCTGTTGGTGGATGCTTGGCCCTCAAGCTCTGTCCTCAGAGGGAAGCTGCAATGTTCTCACATCTCCGGATGCCCCACTGGGC-CTTCCTCTCTCAGGCCTGGT---GTCTCTGTCCCCAGGAAAGGTTCTTGAGATGGGC-----------------------------ATGGGAGTCGGGACTTCCCGGG--------GGCCTCCACACCTGGAAGAGGGTTGCCCTAGGCGGAGCTCTGGCCTGGCCAGGCAGGGGCCGTACACTGGCTGGAGGGAGGAGGCCAGGGCGGGCTT----------------CCAGGCCGAgggtggtgagggtgaggtggggctggagacggtgaggtggggctggagacagtgaagtgaggcaaggcgaggtgggTCTGGGGGAAGCCACGGCTGGC--------ACTGCTGCTCGCCTGGAGCCACTCTCCAGTCTCAAACCACAAG-CAGCAGAGGCGGCTCAGGATTCACACTTCAGTTCTTCACAAACACTGACGAGTTTCTACCTTTTAATCACTTGAG--AAAAAA---TTCTCCAGAGTCCTGATGTGTGGGGTGGGCCGGGTCCACCACCCCAAGTTCCTGGC-TCCCACCCAAGGCTGGGGCCCACCTCCTCCCCAC-CCTGCCTCGCCTCTCCTGGCCTGAAGGGTTTCACT----------GTCCCTCACCGCAGCCAGCCTGGGCACCC--------TATGCCCCAGCCCC-------------GCAGGGTCCCGAGAGGGGCGGCAGTCCTGCCCCACCCAGTGGCTCCCACCAGAGAG-GGCCGCTCTATGCATGTGACCTTGGCAggcagaatagagccgtggtcagcgtgcaggctttggtgggaacaagcct s mm3.chr5 116906533 1650 - 149719773 agcaagAAATGCATGCAGCCCTGCTTCTACCTTGGCTTGGGACCTGTGAGTGC-TGAACTGTGAGGGGTAAAGCTTCTGCTGTTTTCAGCT----AAGATACAGGACTCCGTTAATGTTGTCCCAGGAGGTGGTCCTGAATGGAGCCTCACCCAAGTTCTTGATGGGATCCCTCAGCTG-CCTTCCATTTCAATCGGACCTATTCCCTGACACA-----CCCTATCAAGGAGAGGCTAGCTCTGTAATGCTG------TCCCAAAGGAGTGACCCTAAGCTGGTTTCCCTGGATGTCACATCTCTGTGGAAG------------TCTCTCACAGCTCCCATGTA-TGGG---------------TGCCATACCTGTTTCAAATCCACCAAAACTGTTGGTGTCTATCTCACCCCC-AATCCCGTT--CTTCTTTGGC-----------TCCATCAAGCTGTTTAAACAACAGAGCAAAGGCTACACCAGCTCTTTGGCTGAGGGCATGTGGTGAGACCACTG------CTTCCTGTCCCAGTGCCTGGCCAT------------------------TCCCAACACCTACATT----------TTGAAACTGAAAG---CCACTTCCTTTGAGGCTAGAACTACCTAGAACCTTGCCCT-TTCTCAGGAAT---CACATCAGCAGCTCAGCCCT--CCCCACCACT--GTCAC-------------------------------------CACTAAGTCCCC----------------------------CGGGGCCCAAGACATGGATGATGAAGAACTAGAGGGTAGGCTTG-------GGCCATACACAGACTGCATCTCTAGTATGGCTACACCCAGGACATCCCT--GAGTCCAGAATG-------TGTGACTCAGAACTAAACTGATGAGTGTCA-----AGAGTCTTTCATAGACTTGATGTCCATGTTGGCTGTAGCCAAGACTCACTGATGCTCTAGGATATTGTCTGGGTGATACCAGCT-----GCAAGACTGAGCCAGGGTGCTAAGCTGCT-ACCACAAAGC------------------------CAGCA---------------------------------------CCAAGGGAGCTCATGA--------------------------------------------------------------------------------------------------TGTCTTCCAG----------TCCTGGAAGCAAGCTCATGC--------------------------------------------------TGTCTTCCCATCCTGGGATGTCTGACCAGGTCCCTCCTTTCCCAGGTCCCGTATCATTATTGTTCCTAGTAACTGTGCCTGAGCTGGGTGGCGGCATGTCTCTTGTGCTGAGGGCAAGCTGGCCATGAGGAGCTCCAGGGCTCCAGGAGA-CCCCACACTTGGTGCAGTGTC----------------TGCACTAGGCAGGAGGGGGCAGCACACTGACTTCAAGGAGGACGTCTGGGGAAGGGTTCTGTGATGAAGACAACCAGTCCCAATATGGTGAGGGGTGGGTGGGGCTGGGGAAAATGAGAC---------------------AGGC-------------------------------------------ATGGCTGCT-GC---CGGCTGCTCTCCTGCCCCAAACCACAAGCCAGCAGAGGCGGTTCAGGATTCACACTTCAGTTCATCAAAAACACTGACAAATTTCCACCTTTTAATTACTTGAG--AAAAAAAATCTTTCTAGAGTGCTGACGTAT----TAGACCAGGTCCAC--CCCCAAGTTCCTGGCAACTCACCCACAACTGCAGCCTGCACCCTTCATGGTCCTGCCCAG-----CTTGATTCAGAGGGGTCCACTACTCCCCTCCCCCACTCAGTGCAGGCAACGTGGGCATTCCAACGATCCAGGTCTTAGTACT--AAACACTTGGCGCTGCCCCCTAAGA---CTGGCA------CTCCATTCCGAGTTCCTCATCTAATGA-CATCTCTCCACCCGAGTGACCTCT--GAACAGATTGGTTCAGTGGTTAGACAGCAGA-TTCATTGGGTTCAGCCCT s rn2.chr14 78684312 1653 + 107821284 aggaagaagaggaggaaaccttgcctctatcttgccttgggacctgtgagtgcctgaactgtgagggggtaagcttctgctgttttcagctctctaggatacaggactccattagtgttggcccaggaaTTGGTCCTGAATGGAGCCTCATCCAAGTTCTTGATGGGATCT-------------------------GACCTACTCCCTG-TATG-----CTCTATCAAGGAAAGGGTAGCTCTGTGAAGCTG----CATCTCAAAGGGATGACCCTAAGCTGGCTTCCCTGGAAGTCATATCCCTGTGGAAG------------CCTCTCACAGCTCTCATACAAGGGG---------------CGTCATACCTGGTTCAAATCCACCAAAACTGTTG-TGCCCGTCTCCCCTCCGAAATCTGTT--CTTCTTTGGC-----------TCAATCAAGCTGTTTCAACAGCACAGCAAAGGCTAAACCAGCTCTTTGGCTGAGGGGATGTGGCAAGACCACTG------TTTCCTGCTCCAAGGCCTGGCCAT------------------------TCCCAACACCTACAGT----------TTGAAACTTAAAG---CCACTTCCTTTGAGGCTAGAACTACCTAGAACCTTGCCCT-TTCACTGGAAT---CACATCAGCAGCTCAATCCT--CCCCACCAAT--GTCACCAAATGTGACACCAGCACTCTTTACTGACCTGCATCTCACTAAATCCCC----------------------------AGGGGCCTAAGAGATGGATGAGGAGGAGCCAGAAGCTGGGCTTG-------GGTCACATACAAGCAGCATCTCTAGTGTGGCTAGAACCAGGATATCCCT--GAGTCCAGAATG-------TGTGTCTCAAAACTAAACTGC----ACTCA-----AGGGTCTCTCATAGAATTGACGTCCATGTTGGCTATAGTCAAGGCTCACTGATG----------TTGACCGGGTGATACCAGC------ACAAGACTGAGCCAGGGTGCTAGGTGTCT-ACCACAAAGC-----------------------ACAGCA---------------------------------------CCAAGGAAACTCGTGA--------------------------------------------------------------------------------------------------TGTCT-----------------------------TTATG-------------------------------------------------------------TCCTGGGATGTCTGACCAGGG-CTTCCTTTCCCAGGCCCCGTAT-GTCACTGTTCCTCATAAGCGTGCCTGAGCTGGGTGGTGGAGTGTCTCTTGTGCTGA-------CTGGGAGTGATGAGCTCCAGGGTTCCAGGAGACCCCCACACTTGGTGCAGAGTC----------------TGCGCTAGCCAGGAGGGGGCAGCACACTAACTTCAAGGAGGATGACTGGGGAAGTGTTACGTGTTGAAGATAACTAGTCCCAGTACGGTGAGGGGTGGGTGGGGCTGGGGAGAAGGAAAC---------------------AGGCAA---------AATCTCCGGGAAATGCACGCTGGCCTGGCATGATGGCTGCT-GC---GGGCTGCTCCCCTACCCCAAACCACAAGCCAGCAGAGGCGGCTCAGGATTCACACTTCAGTTCATCACAAACACTGACAAATTTCCACCTTTTAATTGCTTGAGAAAAAAAAAATCTTTCAAGGGTGCTGACGTAT----TAGACCAGGTCCAC--CCCCGAGTTCCTGGCACCTCACCCACAACTGCAGCCTGCATCTTTCAAGCTCCTGCCGGG-----CTTGACTCAGAGGAGTCCACT-----CCCCCACCACCCAGTGCAGTGAGCCTGGGCATTC---TGATCCAGGCCTT-GTACTAAAAACACTTGGAGCTGCCCCCTGAGACTGCTGCCA------CTCCATTCTGAGTTCCCCACCTAATGAGCATCTCTCCGCTCAAGCGACCTCTGGGAACAGATTGGGTCAGCGGCTAGACAACAGA-TCCGCTGTGTTCAGCCCT a score=14937.000000 s hg15.chr4_random 716703 312 + 1219494 cccctcctcctggcctgtggcccactctgagcctcagtttcctcacttgagcagtgg------------------gggtGGGGCAGCT----GGCTGCTGGGCTTGCTCTAG------------------------------T--GTCAA---GGGAAGGGAGGAACCGCCCAGCTCAGCGTCCGGCCGTGCTTT-----TCCTTCCTGCCTGCGGGCCTGGCCTCCAGAACAGGCGTCTCCCCGCGGCCCTT-----GGCACAGACAGA-GCCACATTCCCAGTGCCACACCCCTTCCCT-CTCTGCACCTTGGCAGCAGCAG-------TGCCCTCCACCTGGAACGC------------------------CACCCTCTCCACCTCCTCTGCCCCGCCCTTGCCCCTTG s mm3.chr5 116908188 354 - 149719773 CCTCATCCCCAGACTTGTAACTCATTCTCAGCCTCAGTTTCTTCATCTGAGGAATAGATCCCACAGCTCCCCGCTGTGTGGGCCATCTAGTGAGGTGACCGGCTTACTCCAGGATACTCAGCTTCCACTGGCAAAGCCTTTTTTAGTCACACTGAGAATTGAGGA------------AGTGTCAGAGAATGCTTTGGAAATTCTCTT---------GCTTGACATCAGGAA---ACGCTTTCACGTTACACTTCCATAGGTCTGGCAAGATGCTCCAT---CAGTCCCACAACCTTTGGCTGAACTGCATCCCCACAGTGTCGGAATTTGATGCAAACACACCAGAATGC----------------------GAAATTAACTCCACCTTCCCTGCT---------TTCCAAG s rn2.chr14 78686088 358 + 107821284 ccCCATCCCCAGGCTCTTAACGCACTCTCAGC-TCAGTTTCTTCA-CTGAGGACTAGATCCCACAGCTCCC----GCGTGGGCCACCTACTGAGGTGACCAGCTCACTCCAGGATACTGGGCTTCCACTGGCACAACCTTCCT--GCCACGCTGAACATCAAGCA------------AGCGTCAGAGAATGTTTTGGAAATTCTCTT---------GCTTGACACC-------------TTCCCATTGCACTCCCAAGGGTCTGGTAAGATGCTCCAT---CATCCCTCTAGCCTGTGCCTGACCTGCATTCCCAGAGTGTCGGAATTTGATCCAAACACACTAGAATACATTCTAGCTCCACACAGCGGAGGGAATACGTTTTACCCTCCCTGCT---------TCCCAAG a score=242.000000 s hg15.chr4_random 717015 61 + 1219494 GCCCCTCATCTAGACCACACTCCC--CTGGGCTGGACCCCAATCCGCAGGCCCTGGGCCTTCT s mm3.chr5 116908542 58 - 149719773 GCCC--CATGTGCACCACTGTCCCTTCTGGGTTG---TTTGTTTGTTTGGTTTTGGTTTTTTT a score=25861.000000 s hg15.chr4_random 717079 306 + 1219494 ACACAGGCTCAGTCCACGGCAGGGC----CCCCACTCCTCAGAGAGGCAGCCCCCACCCGGCACCCCCCGACGCTGTGGCATTTTCAGCATGTCTGTTGGCTATCTGCCCCTCCCCTGACACCAGTTCTGTGGGG-AGAGATCTCTGCATGTCCGTCCCC--CATGTCCTTG---GTGCCTGAACAGTGCCCAGTGTGACACTGGCACCAGGTGCCTCCTGCAGCATGAACAGACCTCGTCCACACCCCAGCTGGCTGGAACCCCTACTCTCCGTGGGGCCTAGCTCATGG-GCTCATGTGCTGAATTACACCA---------TCT s mm3.chr5 116908750 280 - 149719773 CCACTGTC----CCTTCTGAAGGACACTTTCCAGCCCCTCACAGAGTCTGGCTCC-CTGTGTATTCCTC------------TCTTCAGTA---CCGTTAGCTA---GATTCT-CCCCAGCATCAGCTCTTGGGTACAGGGACCTCTGTAAGTACATCCCCTGTATGTCCTGGTATGTGCCT--TCAGTGTCCAGTATGACATAGGCAACAGATTCTTCTT---------ATAGGCTTTGTT-ATATCCCAA-TAGCTGGTGCCCCGATACCCCATGGCACTCAGTTCATGGTGCTCTCTTGCCAAATGAAACCA---------TCT s rn2.chr14 78686447 287 + 107821284 CCACTGTC----CCTTCTGGAGGACCCTTCCCAGTCCCTCACAGAATCTGGCTCC-CTTTGTGTTCCCC------------CCTTCAATG---CTGTTACCTA---TACTCTGCCCCAGCATCAGCGCTTGGGCACAGGGACCTCTCTAAGTCCATCCCCTGTGTGTCCTGGTATGTGCCT--ATGGTGTCCAGTATGATGTAGGCGACGGATTCTTCTT---------ATAGTCTCTGTC----TCCCAA-TAGCTGGCACCCCAATACCCCATGGCACTCAGCTAATGGTACTTTCTTGCCAAACGAGACCAGACTCGCCATCT a score=84630.000000 s hg15.chr4_random 717385 1923 + 1219494 GGCCAGCCCCAGGCACCCCACTTCTTCCATCTCGG---------GGGACCCCTGGCTGCAGGAGGGGGGCACTCCAGGGGCTCTGCACCC---ACCAAGCGCAGCCTGGGCCT--CCAGGGTGACCTCCCGGCCCCAGCATCCTCATCGAT-AGGCAAGGGCAGCAGCAGTCACTGAGCAGATCAGCTGTGGCCGGGACACCCCACGCCCACACCAGCCTGGCTGCTGACCCTCCGGG--CCCAGGGGGTGTGCTTAGGTAGGAAATCTGCCGGGCACCTTCCTCATCTAGAGGAAGCAGAAGCAGAGGGCTCCCGCCAACCAGACCCTCCTGGGATGCGTGGGACGCCTGGGCCACGGGCACAGTGGGTGTGAAGGTTGGGGGTGCTTCCCTGCCCACAGTCACCTCTTGTGATAGGAGGGCTAGGCTGCTGGACCAAGGGAGGGGCAGGGAGCC--------------CCCAAGGAAATGTCCACTG---TGTTCTGAGTGCGCCAGCTCTGTGCCCGCTCCAT-CGCCAACTGCTCGTTTTGTTCTCCCGATTAGGACCTCGAGGCTGAGTGAGCTGCAACGCTTGGCTACCCA------GCCAGCGTGGCTAGTGTCACCCAG------------------AGCCTGGGGCCACCTGGCCCACCCCTACAACACAACCTG--------------------AGGGTGCCCTGAAAGCCTTATGGCCCTGGCAGGGCCCCTACCAGGCATTTCCTGCTGAGCCTGGCTCTGGG-----GTGGGTAAGAAGGAGAGGAGAAACCCCAGGCCCACTCTCAGA-AGGAAGCCCACCAACCTTAAGGACAGTGGGGGTGGGCCCTGGCCTCTGTGGAGGGGGCAGGGCTCTGGGTAGGAGGCCAGGGGACACAGGGTGGGCCACGCCATGTGGGGTACAGGGAGGAAGCTACCGCAGGGCCCAGCTCAGCAGGACAGGAAGGCCTGGGGAAGCAGGGGCTCCAGCCCACCCTTGAGGAGTTAGGAGCTGCTTCTGTTTTAAACTGATCCCAAGAGCCCCTGGGGAGGCTGGTTGGGAAGCTCTCCCAGGCCACAGCCCCCTTTTGGGTCCCGCTCAATGCTGCTGGTTCCCTTGAAGAAAGAGTGGTCTGGTGCTCACCCTAGAGAAAACTCGGGCAAAGAAGCAGAGCTCCAGTCCTCAGTTTCCCCAGGAGTAACTGGGGCAGTCCCGGAGCTGCT-GGACCCAGGACTTAGTGCTGAGGCTGCACAGAGGGCGGGGTCCACGCATCCGCAGAGACTCGGATGAGGAACAGGAGCAGGCGGTGCCGGGACAGAAGGAGACCCCCAGAGAGTTGCAGTGGAACCCACCAGGCAGCTGAGGAAACCGAGAGCAGGAAACCGAGGCCAGGGAATGGTGGAAGGTAGCCCACCTATTCAGTGGGCTCGGCTGGAGTCATGGTGAGGCTGGTCAGCCGGACCCTGTCTCTCTTGCACAGTGTCACTCCACTCGGCCTGAAGTCTCATGGTATCGGGCACAGGGGAGGCACTCAGGCACAGCACCTACAGGCAAACGCCACACCCTGCA-CCCGGGATCCAAGCTACTGTCACCCTCTGTCTGGG-CTCCC-------AATCTGTTAGGGAGGCAGCCACCTCTGACTCACATCCTTGTGACATCTGTTCCACCCAGACACGTTGACACATCCGCCAGCGTCCTGGGAGCAATCTTCCACATGAGTTAGCCAAG-CATGGGATT--ACATAGAGTCAGACAGAG----CATAGCTTGTGCAAAGGCCCTGGGGTTGCAGGTAAGAGAAGG--CACCCACCTTCTGACATGAGAGACAGAGGTGGGTCTTAGTTAGAACTGCCAGT-CCAGGCCACATGCCCAGGTGAGGCAG----ACAGCATCTCAGACCTTCCCTGGGATGAGCTCCTGGGCACCATTCACGcctgggctccagtcccagccttggtcccttaagctggagactaggggcaagtcacttcactccctgagcctTGC s mm3.chr5 116909256 1377 - 149719773 GGCTAGACACATGTATCCACCTTCTTCA-CCTAGGTGGGGAAA-GGGGGTTCTTTTTACATGAAAGATGTCCTT--GAAGCTATGCACTCTGGAGCAGGCA----CTGAGCCATCCCAGGGTGAGCTTCTCCTCACAGTATCTGTGTTGATAAAGCAAGAGCAGCA--AGATGGTGGGCAGCAT-------------ACACTCACCCTTTGCTCCCAAGCTTCTCCTGATCCTCTGAAGTCCATAGGAATAGAGTCAGGGGCAAAATCTACTAATAACT-----------------------GTGGAATGCTGCT--------GTCTCCTCCGAGGTCAGAGTCGAGCCCTGGTTGAATAAAGAAC-ACAACCGAGGGCAGGG-------CCTTCCC---------------------AAGTTTAGCCTGCTCTACCTCTCCAACATCCAGCAGCT--------------CCCA--------CCCACTAGCCCCTCCTGGGGACACCTACATCATAGGCACATGATGCAGCCACCAT-------------GGAGTCAGGAACCCAGAGATGATCCTGCCTACA-GCTGGACCAGGGA------GGGAGCT----------------------------GGACAGTAGCTCACAGTCACCCGTGCCAACGTTA----ATATTCTGTCCTTTCCATGGAGTCACTGAGGT---------AGCCTCACAGTCC---CAGGG-TCCTAGAAGGCATTTCCTATTAAGCTTGGTCTAGAGTAGCCTTGGGGCCCATCCCTGGGAAGACAGTTGTACTCCCCCAAAGGCAGAAAGTCCACCCTCCACGAGGACAGCAATGCTGGGTCCCAGTTTCTATAGACAAGGCAGGGTTCCAGGTAGGAGGCCAGGGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGCTCATACC--AGAAAACTCTGGCAAAGAAGCAGAAGCCCAGGTCTCTGTTTGCTCCTCAAAAACTGGGAAGTTCAAGGAGCCATTAGGAATCAGG------------------ACAGAGGGATGGGCACCTGCTTCACCACAGTCTGCAGAGAAGCAG-----------------------CTGAAGGCCCC-----------------ATCTCTCA---------------------CAGCCAGCAGTAGTCTGG------------------CACCCACGTACTAGG---------------GGCAAAGGGGGACAGTCAGAGCTTTACTCT-------------------------------------------------------------------------CAATGGGCACATCCCACAACCTGAAGCCCAGGATCGAGGCTGGCATCATCCTGAATGTGGGGCTGCCTATTAATAATCTGT---GGAAGTGGCCACCTCTGACTCACATCCTTGTGACATCCATTCCA-CCAGACATAGTGACACATCAACCAGCAT-TGGGAAGCAATGTTTCATGTGAGCTAGCCAGACCAGAGAGTT--ACAGACAGCGCCTTGGAT--------ACTTTCGTGGAGGCCTTGGAGTCA-GGACAGGAGATGGTGCACACACCTTTAGACGTGCCAGACAGGAGTG--------------CTACGGGG-ACAG------TACTCAGCTGAAGCAG----ACAAGGGCTAag----cacgtggg-------cctgggtaccaagaaggcctatgctctagtcctaactttgtcccctcatact--------gtgGCAGGCCACATCTCTTTCTGAGAATGGT s rn2.chr14 78686958 1413 + 107821284 CTCTAGACACATGCACCCACCTTCTTCTTCCTAGCAGAGGAAAAGGGGGTTCTGTTTACATGGAGAATGTCCTT--GAAGCTGTGCACTCTGGAGCAGGCA----CTGAGCCTTCCTGGATTGAGCTTCTCCTCACAGTACCTGTGCTGATAAAGCAAGAGTAGCA--AGTTGCTGGGCAGCTT-------------ACACCCACACCTTGCCCCTGAGCCGCTCCTGATCCTCTGAAATCCTTAGGAATATAGTCAGGGGCAAAATCTACTAATAACT-----------------------GTGGAACGCTG-----------TCTCCTCTGAGGTCAGTGCTGAGCCCTG----------------CTGTCAAGGGCAGGG-------CCTTCCC---------------------AGGTCCAGCCTGCTCTACCTCTCCAACATCCAGCAGCTGAGAAGACAGAGCTCCCA--------TCCACTAACCCCTCCTGGAGACACCTACATCAGAGGCACATGATGGGGCCATGACATG----------GGGGTCAGGAATCCAGAGAGGATCCTGCCTCCA-GCTGGACCAGGGAAACCGAGGGATCTTCCCTTGTGCCA---AGGCTACTAACTTGGA----AGCTCACAGTCACCTGTGCCAAAGTTA----ACATTCTG--------------------AGGG---------AGCCTCACAGCCC---CAGGG-TCCTAGGAGGCATTTTTCGTTAAGCTTGGCTCAGACCAGCCTTGGGACCCATCCCTGGGAAGACACCTGGA-TCCCTCAAAGACAGAAAGTCTGCCCTCCATGAGGACAGCAGTGCTGGGTCCCAGTCTCTGTAGACAAGGCAGGGCTCCGGGAAGGAGGCTAGGGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGCTCATACC--AGAAAATTCTAGCAAAGAAACAGAACCCCAGGCCTCAG----CTCCTCAAAAACTGCAAAGTCCAAGGGGCCATTGGGGCTCAGG------------------ACAGAGGGATGGGCACCTGCTTTGCCACAGTCTGCAATGAAGCAGATGAGGAG-----TACTGAAGAGCTGAAGGCCCC-----------------ATCTCTCA---------------------TACTCAGCCATACTCTGG------------------TGACCAAGTAAGAGG---------------GGCAAAAGGAGACAGTCAGAGCGTCGCTCT-------------------------------------------------------------------------CTATGGGCAAAGCCCACAACCTGAACCCCAGGATCCAAGCTGGCATCATTGTCTATCTGGGACTGCCTATTAATAATCTGT---GGAAGTGGCCACCTCTGACTCACACCCTTGTGACATCCATTCCA-CCAGACACTGTGACACATCAACCAGCAT-TGGGAAGCAATGTTTCATGTGAGTTAGCCAAGCCAGCGGATTACACAGACAGCTCTTCAGATGGACGACAGTTTATGCAAAGACCTTGGAGTCA-GGACAGGAGAAGGTACACACACCTTTAGATATGCCAGACAGAAGTG--------------CTACGGGGAACAG------TACTCTGCTAAAGCAGCTGTCTGTGGTCTAAG----CGTCTGGG-------CCGAGGCACCAAGCAGGCCCATGCTCCAGTCCCAACGTTGTCCCCTTGCACT--------AAGGCAGGCTACTCCTCTTCCTGAGAATGGT a score=99.000000 s hg15.chr4_random 719308 23 + 1219494 TCCGTCCTCCCCCTCCACGCTTA s mm3.chr5 116910633 20 - 149719773 CTTTCCCCTCCCCCCTAC---CA a score=50904.000000 s hg15.chr4_random 719344 471 + 1219494 TCTGAGGACCAAACCAGACAGCTCCCAAGCACTCTGCCATAGGCACTTGGCCCAGCACTGGGTCCCTAGGCCCTGGAAGTGGACAGCACCCTGCTTATCCCGGATCCCAGCACCAGGGC---GAGATAACAAGGGAACAGAGTGGAGATGC----CGAGGCCCTGGGGCTCCTGCTGGGGTGG---------CATGCAGTAGGGGCGCCAGTCAGAGAAACCCAGCCCCACTGCTCCCACCCAGAGCCAACGGCAGAGGTCAGGAGCCACCACGATGGGCACCCTGTGTAGGCAGCTGTGTAAGCCCTACAGGGTGGGCCTTGGGACCGTATAGCAG-------TAAGTGGC------CTGAG--------------------------AGCCCTGCGCC---------------GCCT-----------GTCCCTTTCACTCATCACCGTGGTACTTTTCGTACCGTGGCGGTCTTGGCGGCCTCCCTTGGACCGCACAAAACCATGCAGCTCCTGCACACACCTCGGGCTCAGCCCAGGCACTTTACGGC s mm3.chr5 116910808 490 - 149719773 TCTAAGGACTAAATCAAATGACTCACAGA----CTGTCACAGGCACTGGGCCTAGTCTT-GGTGCCAGAGTCCTTGGGGT-GAGGGCACCCTGCTGAGCTTGGATCCCAGCACAAGGGCACAGAGACACCGAGGGAACACATTGGGCATATTATATGTGGTCATGAAGTTCATGTTGGCAGGGGAGGGCGGAGATTAAGTGAGGCAGGCAATCTG-----------------------TGCCAGAGCCATGGGCAGAGG--AGGGGTCAGC---CTTGGCACACTGAGTAAGCACCTG---AAGTGTCCTAGGGCTGGCCCAGAGCCACTGTACCAGACCTTCCACAGCAGCTGTCTGCTGGGGTCTGCCAGGGTC------AGACACCAGCCCTGATCCCTGCGGTTGTTGGTGGCCTTGGCTGTTCCAGCCTCTATGACTCAACACTTGGGGATTTTTTGCATCACGATGG----------CTTCCTTGAGCCACCCAAAATCAAGC--TTCCTGAATCT-------GCTCAGCCTGGACACTACCCAGC s rn2.chr14 78688373 522 + 107821284 TCCAAGGACCAAACCAAATGACTCACAAAGACTATGTCACGGGCACTGGGTCTAGTATT-GGTGCCAGGGTCCTTGGGGT-GAGGGCACCCTGCTGAGTTTGGATCCCAGCACAAGGGCTCTGAGACACTGAGGGAACACACTGGGCATATTGTATGTGGCCATGAAGTTCATGGTGGTGGGGGAGGGCAGAGATAGAGTGAGGAAGGCAATCAGAG--TTCCACCCCCATTGCTCCACGCCAGAGCCATGGGCAGAGGTCAGGGGTCAGC---CTTGGCACACTGAGTAAGCACCTG---AAGTGTCCTAGAGCTGGCCCAGAGTCACTGTACCAGACCTTCTACTGTGGCCATCTACTGGGGTCTCCCAGGGTACTCTAGAGATGCCAGCCCTGATCCCTGCCGTTGTCAGT-ACCTTGGCTACTCTATCCTCTATGACTCAACACTTGGGGATTTTTCACATCACGTTGG----------CTTCCTAGAGCCACACAAAATCAAGC--TTCCTGGATCT-------GCTCAGCCTGGGCACTTTCCAGC a score=7986.000000 s hg15.chr4_random 721038 52 + 1219494 TTCGTTTTTACTCTCTGGGTTTATTATTCTATTCCCTTGCCTTCTGCTTCTT s mm3.chr5 116911742 49 - 149719773 TTAATTTTTATTCTCTGGGT---TTATTTTATCCCTTAATCTTTTGGATTTT s rn2.chr14 78689224 49 + 107821284 TCAATTTTTATTCTCTGGGT---TTATTTTATCCCGTAGTCTTTTGGATTTC a score=127009.000000 s hg15.chr4_random 721093 1771 + 1219494 ATTTTTTATTC---CTTAGTAAATTTTAGGTTGGCCTCAGGAGGTTTCCTGTCTAGGCTGGGTCTTGTCCTTGCGCTGGCTTCCTCCTGGGGCCACTCACAGGCCAGCACAGGTGGGCTCAAGGCGACAGGCCAGCCCCTCTGCTGGGGCTGCAGCAGGCATCGGGGTG-GGAGAGCAGCCACAGCCACTCCCAGGCCGGGGTCTCTGGCCGGACAGGGGAAGGGAGATGCAGGCAGGCCCAGGAGCAAGA---GGGAGGCA-ACAGGAAGAGGTGCTGACAGAGAGGCAAAAAGAAGGAAGAAGGAGTGGGCCAGACCCCGGGTTGGGGAACCGAGAGCTGTGTGTTCCTCCTCAGCCTGGGAACCCCAGAGCCTCGGGGCCCGGGCAGGGGACAGGATGACTCATGCCC----GCTGGCTCCTGTCCTCACCC-TCAGCGTGG-CCCAGAGGGGGCCTGGGTGACCTGAACGTTCCCAGGC-CCCTCACAACGCTCCACTGTTCAGAGAGGCCCAGTGAGGACAAGGGTCTGGCGGTG----------------------GGCCCGGCCTGCCGGGAAAGGAGCCCAGCCCCCAGCCTCTGCCGCAGCCTCTCTGCACCCCTGCAGTCTGGGCCCCGGTCCTCCGCGGTCAAGACAGGCAGGGGTGGAGTCTGGATCAGGGTCTCCTC---CTCTCCGCCCCCAACCATGCAACTGTCCAGCCCCCTTCCCAAGGCCAGGCCGCCCACAGCCCAGCTCCTTCCTCCCTCGGAGCCAGCCTGTCACAGCCTTTCTGCTGCAGCCTCAGCA-GAGGTGGCTCTCAAAGACAGCTCCGCTCAGCCTCAGGGCTCAAGG---CCACCCA-TGCCCTACCTCGCCGGACACCTCTCAGGCTGTTCCACGAGTTCCTCCAGCCGTTCCCCACCTGCAAACTCCCGCCTGGCCTTCTGCCCCCGGCCAGGTCACCCCAAG----------------ACACCCCCAATGCCCT------------------------------------------------------------TACTGCTCCCTGGGGATGGCGCTCCAGGCCAGGTCCTTCCTCAGAGGGGTGAATGGCTCTAGTTAGGGTCCCCAACCACCACAGCCCCAGACCCGTGGGAG--CCGAGGCCTGAGCTCTCCTGCCTGCCCAGCCTCCCTGCACCCACCCCTGGCACGGGAGCCCGAGACAGCCTCCCCAGAGCCCCCAGGTGAAGTGCCACCTGGCCCGTCATCAGCCCGGGGGGGGGGCGGTCACAGGACAAGCACCTCCACGTACTGCTCGGGTGGCAGTAAGACTCTGGAGTCAGCAGGGCCTGTAAGCAAGCCCGCCGGTGTCTGCCCC-------TAGGGCCTCCTCCTGGCTGGGAAGCAGCCACGGGGCAGGCTCGGGCAGCTCAGGCAGGGGCAGGCTGCATCAGACAGGGAGGTGGCACAGCCCGGTGGACACTCTGGGGACACAGCCTCAGGAGTGACTTGGGGATGCCCTTTCCCTCCCCAGGGAGGCAGCTCTGGACCATGCCACTGTCTGC--CAGAAAAG------CCAGCCAA---------GGAGGAGGGAGACTGAGCCGGGGACAGTCAGTCCCACCAGGGCCAATGCCACCCCAATCTCAGCAGTCTGCTGCTCCCTCCCCTTTCATCCCCTGTAGCCCCTGTGCAGGGGTCACC-------GACCCCATCCTGGTCACGTCACCTCCTCCACTCCCACCCAGCCTTCTGCAGCCTCGACGAACCCACTTCTGTCTGTGGCAGCCCCCACCCTTTCCCCAGACCCCGCCCGAGCTCCTCATGGTCTTCTT--GTGGCCACTGCTTGGAGGGCGTATGTTCGGCAGTGGTCTCCAGACCC-------CAGAGTAAGCTT s mm3.chr5 116911970 1529 - 149719773 ATCTCTGCAGCATACTTCATGAAATTT-------------TAGGTCTCCT-TTTAGGCAACACTTTGCCCTTTCATTGAGTTCCTCTTGGGGTGAGCCACGGGCCATCAAAGGTAGCACT--GGTGGCAGTCTGGGCCTTCTGCTGGGGCCTCAGTAGGCAAGAGGCTGTGGAGAGCTGGTGTAGCCAGGTCCA------GATCTCAGGTTGGACAGTAAGGGAGAGAAAAAGACGAACCAGGGGGAAAGAACTAGGGGACACACAGGAAGATCCGTGG--AGAGGGACCAAAAGCAGGAAGAAGGTTCAGGCCAGACCCAGGCTTGCGGAATTGAGAACTGGTTGTTCCTCCTCAGCCAGGAA--CCCAGGGCCTCAAAGGCCTGGTGGTGGACACCATGACTCATGGCCTACAGCTGGCTCCTGTCCCCATCCTTCAGCATGGTTCCACAGAGTGCTCAGCTGACCTGAGCATCCCCAGGCACCCTCACACTACCCCATTGTTTGGAG----------------------------------------------------GCCCAGGCCTGGCC----------------------------------TTCTTT------CAAAAGTCTGG--TCTAGACGTTGACAGCCAGAAGAGACCAGGCAGGGGGAAGGG--AGAATCTTCT----CTCTACCCACCCAATGGCTCAA----------CCCTTTCCAAGGCCAGGCCTCCTGTACCTCGCCTCCTGTTTT-----CAGACAGCCTGTC--------------TCAGCCACAGCACGAGGCAGCTTTTAAAGGTGACTTTA--AAAGCTCAGGGTTCAAGGTCTTCATCCAGTACCATGACATCCTGGGCCCCTCTCACACTGTTCCCTGACAACCCTGAGCCACT-AGCACCCACAAACTTCCTCCTGGCCTT-----CCC-GTCAGGT-ACCTCAGGATCAGGCTGTGGGACAATATCCTTAAGGCCCTCAGGCAGCAGGGGCAGGGAGGCTTCTGAAGATGGCAGGTCTCTGGTGGCTGTATATGTTCCATTGTTCCCTGAGTCTGGTTCTCTAAGTCCAGCTCTCCTTCAGAGG----------------------CCTTGACCACCACAGCCTCAGATCTATGTTAACCCCAAATCTGGTGCTTTCCTATATGGACAGACTCCCTGCTCCCATGCCTAGTGTGGCAGCATCTG---GCCT---------------------TGTCACCTA-ACCCTT-------------GGAGACTCCCACAGGTAACGTGGCT-----------TCTGGTG----------------GTCAGCAGAACC--------------CAGGTCTATGCTTCTACGAGTCAGCCTCTCTCTCTGGCTA----------------------CAGACGGCCCA--CAGAGGC-------------------TGTAGCACAGCTCTGTCA--GCCCTGCAGACACAGCCTCAGG------TTAACAAGGCTGGCTCCTCCCTCTGGAA--------------ATACAGCTGTCAGCAGCAGCAAAGAGAAACCCAGCAGAGAGACATGGGCTGTATGGAGAGGGGGCTGGGCCCAGCCGGAACCACTAGACCCAGT----------TCTTTCCAGCGT--TGTTCCCTATCTGT----------GGGTCCTTTTGTAGAGCTTTACCCCGCTTTACCCCTCCCTAGTTGCTTG---------ACCCCAACC-------------CCTCCATTGGCCTCCATACGCCTGT---------CTTTTTATACCTA-------------CTCCTCACCAACTTCTTCAGGGGATACCGC-TGCAGGGTGGAGGTTCTGAGATGGTCCTTAGACCT-------CAAAGAGAGCTT s rn2.chr14 78689861 1486 + 107821284 CCCTCTGCAGCACACTTAGTAAACTTT-------------TAGGTCTCCT-TTTAGGCAACACCTTGTCCTCTCATTGGGTTCCTCTTGGGGTCAACTACAGGCCATCAGAGGT-----------GATGGTCTGGGCCTTCT-------TCTCAGTAGGCAAGAGGTTGTAGATAGCTGTCCT-GTCAGGTCTA--------TCTCAGGCTGGACAGTGAGGAAGAGAAAAAGACAGACCAGAGGGAAGGAACTAGGGGACACACAGGAAGAACTGTGG--AGAGGGACCAAAAGCAGGAAGGAGGTGCAGGCCAGACCCTGGCTTGCGGAACTGAGAACTGGTTGTTCCTCCTCAGCTGGGAA--GCCAGGGCCTCTAAGGCCTGGTGGTAGACACCGTGACTCACGGCCTACTGCTGTCTCCTATCCTCACCCTTTAGCATGGTCCCACAGGGTGCCCAGCTGACCAAAACATTCCCAGGCCCCCTCACACTACCCCATTGTTTGGAG--GCCGAGTGAGGACAAGGGTCTGGCCATGGGCCCTTGTGGACGGGAAAGAAGCCCAGGCCTGGCC----------------------------------TTCTTT------CAGAAGTTTGG--TCTAGTCTTTGACAGCCAGAAGAGGCCAG---------------------TTCCCCAACTCTACCCCTCCAACAGC--------------------CCAAGGCCAGGCCTCCT---CCTTGCCACCTGCTTT-----GAGACAGCCTGCC--------------TCAGCCCCAGCACAGGGCAGCTTTTTAAAGTGACTGGACTCAGCCTCAGGGTTCAAGGTCTTCATCCAGT---ATTTCATCCTGGGCCCCTCTCCTACTGTTCCCTGACCACGTTGTGCCATT-AGTACCCACAAACTTACCGCTGGCCTT-----CCAGGTCAGGT-GTCCCATGATCGGGCTGCGGGACAATACCCTTAAGGCCCTCAGGCAGCAGGGGCAGGGAAGCTTCTGAAGATGGCAGGCCTCTAGCGGCAGTATATGTCCCATTGTTCCCTGAGTCTGGTTCTCCAAGTCCAGCCCTCCTTCAGAGG----------------------CCTTGACCACCACAGCCTCAGATCTATGTTAACCCCAAATCCCATGCTTTCCTGTGTG--CAGACTCTCTGTTCTCATGCCTAGTGTGGCAGTGCCTG---GCCT---------------------TATTACCTACCCCCTC-------------AGAGACTCCCACAGGTAATGTGGCT-----------TCTGGTG----------------GTCAGCAGAGCC-----------------------------------CAGCCTCTCTTTCTGGCTA----------------------CAGACCGTCCA--CAGGGGC-------------------TGTAGCACAGCTCTGTCA--GTGTTGCTGACACAGCCTCAGG------ATAAGGAGGCTGGCTCCTCCCTCGGGAG--------------ATACAGCTGTCATCAGCAGCAAAGAGAACCCCAGC------------GCTGTATGGAGA-GGGGCTGGGCCAGGCCGGAACCACTAGACCCAGT----------TCTTACCAGCTT--TGCTCCCTATCTGT----------GGGTCCCTCTGTAGAGCTTCAC---------CCCCTCCCTAGTTGCTTGACATCCT-CACTCCAACC-------------CCTCCATGGGTC------------------------TTTTGTACCTA-------------CTCCTCGCCGA-TTTTTCAGGGGATACTGC-TGCAGGGTGG-GGTACTGAAATGGTCTCCAGACCCCAAAGTGCAAAGTGAGCTT a score=115334.000000 s hg15.chr4_random 722909 1627 + 1219494 GCCCCACCTCTC---------TAGCCCCTCTCCCTTTTCAAA---ACCAGGGTGTCTTT-------------CACACAGCCTGAGCC---------CTCAGCCTGGCCCCTCCTCC-TGCTCCCCCTCAAGGAGGCCCCCCCGGGGGGA-----------TCCGTGAGGCGCCCCTGGCATCTTTGGTGCTGCCTTTTCCCAGCTTCGTACTGGAAGGGCCAGGACCCTGCCTGCCGCAAGGGTGGCTCTGGGTAGGTCTTCGAGGGGGCCTGGGTCCCAAGTGGGTC-CCCCCTGCTTCTCAGGACACCAGCCCTGGAATAGCTGTCCCCTTGATGCCAGCCGGCAGGAACCCTGGCATGGGGCAAGGCCCGCT-----AGATCCTCTGCAGAGGTGGGGGTTGGGG---GTCCTTTCTCAATCTTCTTCCTTCCCCAGCAACTTCCTGCCCCAGAGGCAGGCACAGCCACC-CCGACCACAAAACATCACCCTCCTGGTCACA-TCCTCAAGAAAATGGGAAGGTTGATCTCAGAGAGCCCCTGCCCCAAGTAGCAAACCTTCCTGAAGCCAGCACCCAGGACCCCAGGATGGCTCAGGGCTCAGAGGTGGCCACTGCCCCTCCCTC-----------------------------CACTTTACACACCCAGGGCCCCATCCCACCTCATTAGGCAGCTGCAGCCCAGG----GTCTGAAGCTGAGCGAAGTCCAGTCGCGGTGAGGGTCCCGAGGGGAAGGCATTTCAGA-GATTCCACCCCCAGGGTCCCGCCTGGGAGCAGCTCCTCCGGT----------------------GGGGAGGAAGGAGCCACCTGTGG-----------------------------GGACAGGCAGCCA-------------GCAGGGGTACAGCAGGAACGAAG----TCCTGAGGCA-------------------GGGCGGGTACGGGT---GGCGGGTGG-------------AGGCTGAGGCTGCACCCCTGAGCGCCATTAGTCCTAATCAGCCCGGAGGCCTCGATGACCTGACGCCGGCTTTGGAGTTTCCCAGGCCCCGTGCTGCGTGCAGCTCCTGGGGGGCCACTCCCACACACCCC-GCCCCAGCAGCTGGATGGGCACACCCTCACCCTCACGCATCCC-------------ATGAGGCTGCACTTCCTGTCCCTGCCCTG-CCCAGAGAAGGCGGAGGATGCCCAGGTCACACGGCCTGGCCTGGTGGAGCCACCTGAGCC-ACCCAGCACC-------------TGTGTTCCTAGAGGTCTCAGCCTGGGAACGCCTGAGGCCACAAGAGGTGATGGCAACGGGAAGTCACTTCCCCCAGCTCGGGGGATGCACCCCCGTCATCTTCCCCTCTGCCCTGGTCAAACTCACTCTGCTGACCACTGATCTGCCTGCCAGG-CCAGGCCCCAGCACTATCTGCCCAGCCATCAGCGGACCGCCTCGGGCAGCGCCAGCCAC-TCACCCCACTGGAAAGGGGCTTCCCTTTCTGGCCTCGAGTAGGAGGAGAGGAAGCAGCTGGGGTCAGGGAGGGGCGTTTCCGAGAGAGGAGATGAGTGCCGAGTTTCCTGGCCTGCCTCCTCTGGCTCTGAGCCTGGTCTCCATGCAGGGCTGTGTACCCCCACCTGCCACTCAGGGCTCCCAGGCCAGCTTTTCTGGATCTTTCCCCATTGCCCTCCTAAT-GGTGAGAAATCCGGCCTTTTGCTTGGACTTGCCTCAGGTGCCAGCTCTTTGGGACCCAAAGCCCTGGTGGCACAGGTAGGCCAGGCTAACTCCAATCTCAAG s mm3.chr5 116914124 1539 - 149719773 tCACTGCCTGACATATGTGCACATGAAATCCCCcatataaaa---acatacacacatgtaatcatacaaacacacacacatacacat---------cacag---aacacaACCTCTGTGATCAC-----AGGACACACATTAGCCAGAACCATTCCTTTCTCCGTGCCTCTGACCAGCAAGCTTT--TCCTGCCCCAACTCCACATTGT---------------ACCTTGTGTACCGT--------CCTTGGATA---TCTTGAGTAGGCTGAGGCCT---GTGAATCTCTTCCTGTCTCTCCAGCCCCCAGCCCCAAGACAGCTGCTCCCTTGATGCCCAGTGGGAAGAACCCTGAT-TGTGGAAGGGGCGTCTGATGCAGAACC----CAGAGGTGGGGGTAGGGGAATGTCCTTTCTCAACCCTCTTCCTTCCTAAGCAACTTCCTGTCTCCGGAGTAGGCACAGCCACCATGAACCACAGAACTTCACCCTCCTGGTCACATTTTTTGAGAAAATAGGAAGGTTGATATCAGAG----------------ATCAAACTTTCCTGAAAC---------TGAGCTGGGGA---------ACTCAGTGTTGACCTCTGTTCCTACTTTAAGTGTAGTGGACCCAACAGCAGACTCCATAGCTGGCAGAACCAGGGCCAGGCCCCACCTTCCTGAGCAACTATAGCCTTGA----TTCTGAAAGGGA-CGGGTCTCAGTTCTAGAGA-AGTCTGGAAAGCAGGTGATTCTAGAGGGCCCCTGCCCTATGGTTCCATCCTGGGGCAGAAGTCCCAGCCCTGGCATGTGCTAGGCTCAAAAGCTGGGATGGGGTTCCCTGGAGCAGCACAAAATTCACCTCCTGGTAGAATCGGACAGGCAAGCAATAGGAAGTTTGGGCAGGAATTCACAGGGAAGGGAGGCCAGCCCGAGGCACAGCTCAAAGACCAGAGACAAGTGGGTGCAGGTCAGAGATAGTGGCAACTCCAGCTTCAGGCTGAGGTCT--ACTCTTAGTGCCATTAGCGCTGGTCAGTGGGCAACGCTAGAGAGCCTGACTCCAGCTACAGAGGTCCTCAGGCCC--TCATAGATCCAGTTTCCACTGAGTTG-CACTCTATATCCCAGTGCTAGCAGT-GGCTGGGTTTCCCCTCACCATCACATACCTTCTAAGTGTATGTGATGAGGCTAGACCTTCCATGTCTGCCCTTTTACAGAGAGGGTATAAAGTGTCCAGCTCACACAAC-AGGTCTATAGGAAGCATCTGCACCAACCCAGGCACAGGAGGCCATTTGTGTGTCCCTAGAGGCTTC----------------TGACAACAGAACATAATGGCA----------------------TCAGGGGACTTGCTCCCTTCCTTG----CTCTACCGTGGTCAGACCCATGCAGCTGGCCACTGATCTGCCTGCCAGGACCACGCCTCCACACCCTTTGCCTAGTCATCAGGGGG--G-AAAGGTCAGTGTCAACCATTTCACTCTTCCAGAAAGGGGCTCCCCTTCCTGGATTCAAACAGGAGAAGCAGCAGCATTCAGGGCCAGTGCTA--------------------------------TTTCTGCCGTGCCTCACCCTGCTCAGTACCT---------------------------------CCCTCTGTGTCCCTAGGGCA------------------------CACTCCTTAC-TCTGTCAACTCAGGACTCT------------------------------------------------------------GCCA--------CCA-------- s rn2.chr14 78691926 1425 + 107821284 tcactgcctgacATATGTGCACATGAATTCCCCCTTACAAAACATATATACATGTATGTAAacacacacacacacacacacacacacaTCATAAAACACAAC--AACACAACCTTGGTGTCCAC-----AGCACCCACACTGGCCAACA-----------------------ATCAGA-------------GCTCTCACTCCACATGGT---------------ACCTTGTAAACCAT--------TCTTGGACA---TCTTAAGTAGACTGAAAGCT---GTGGATTTCTTCCTGTCTCTCTGGACCCGAGCCCCAAAACGGCTGCTCCCTTGATGCTCAGTGGGAAGAACCCTGAT-TGTAGAAGGGGTGTCTGAGACAGAGCC----CAGAGGTGGGGCAGGGGGAATGTCCTTTCTCAACCCTCTTCCTTCCTAAGCAACTTCCTGTCTCCGGAGTGGGCACAGCCACCATCAACCACAGCACTTCACCCTCCTGGTCACA-TTTTTGAGAAAATGGGAAGGTTGATATCAGAG----------------ATCGAACTTTCCTGAAACTG--AGCAATGAGCTGAGGA---------ACTCAATGTTGACCTCTGTTATTACTTTATGACCAGTGGACCCAATAGCAGATGCCATAGCTGGCAAAACCAGGGCCAGGCCCCACCTTCCTGAGCAACCACAGCCTTGCGCCTGTCTGAAAGGGA-CAGAACTCAGTTCTAGAGA-AGTCCAGAAGGCAGGTT-TTCTAGGGGGCTCCTGCCCTATGGTTCCGTCCTGGAGCAGTA------------------------------------------GCTCCCTGGAG-------------------------------------GAGCAATAGGAAGTTTGGGCAGGAATTCACAGGGAAGGGAGGCCAGCCCAAGGCACAACACAAAGATCTGAGACAAGTGGGTGCAGGTCAGAGAGGGTGGCAACTTCAGCTCCAGGCTGAGGCCT-AACTCTTAGTGCCATTAGCTCTGGTCAGTGGGGGACTCTAGGGAGCCTGACTCCAACTCTGGAGGTCCTCAG------TCATAGATCCAGTTTTCACTGAATTACCACTATATATCCCAGTGCTAGCAGTAGGCTGGCTTCCCCCTCACCATCCCATACCGC-------------ATGAGGCTAGACCTTTTATGTCTGCCCCT----AAAGAGGGTGAAAAGTGTCCAGCTCACACAGCAAGGTCTATAGAAGCCATCTGCATCAACCCAGCCCCAGGAGGCTATCTCTGTGTACCTAGAGGCTTC----------------TGACAACAGAACATAATGGCA----------------------TTAGGGGATTTGACCCCTTCCTTG----CTCTGCCATGGTCAGA-CAACGCAGCTGACCACTGATCTGCCTGCTAGGACCAGACCTCCAAACCATTTGCCTAGTCGTCAGGGGG--GAAAAGGTCAATATCAACCACTTAACTCTTCCA-AAAGGGGCTCCCCTTCCTGGATTCAAACAAGAGGAGAAGCAGCACTCAGGGTCAGAGCGG--------------------------------TTTCTGCTGTGCTTCCCCCTGCTCAGTGCCT---------------------------------CGCACCATGTCCCTAGGGCA------------------------CACTCCTCACATCTGCCAACTCAGGACT--------------------------------------------------------------------------CCA-------- a score=95566.000000 s hg15.chr4_random 724536 1162 + 1219494 CCAACACACG---TTTAGGAAGAGCAGCTACAGAGAAAGAAAGCACTTTCG---TTCAGGGAGAGG--ACAGGGGACACCGACTCCGCTCGGCGGCTCTTCCTCACCAGG----------CTTTGGTCCTCCCTATCTACCGC-TGCCAGGGCCACCGAGACCAGGCCCAGAAGCAGCTGGGTCCCTGCTGCCGGGTGGCAGGCAGCGGTGGCTGTCACAGCGCAGCCCGCAGGGGGAAGGGAGGAGGCTGTGATGGAAACCTGAAGAGTTTCGTGGGAGACCAAAGCACAACAGTCTGATATTATCTGATTGGAAACTCCACCAACTGGGCGGCAGC-TGCCAGGCTGACTGG-CACATTAGGCTCTGATGCTCAGTAGAGTTAAACACAGGTGGGGGGAGTGACAAGCCACCTTCAAAGAGCTTGGCACAGCCCGCCCGTTGCCCGCGCCACTTCCCTGCCCAGGAGTGGGAGGCTGGGAGAGCCGGCACTCCCCTCACCCTTCCTCTGGGACAGGCCCACGTGGGCACCACCAGGGCATGGGCTCTCAGACGCGACCCTGACCTTCCTGAGTTCCCAAGCAGG------------------------------------------AGGGGCAGGCGGACAGGTCACCATGGAT-------GGGTCAACATGCATGGTGGCCATAGACCAGGCTGGGGGCTCAGGAAGGCACCCAGCTCAGGGTGGAGTTGGGGGTGGCCAGGGAGGGTACCCTGAGCACCAAGCAGGACAGACACTTATGTCTTCAGCTGAAATTGCTTCTAAGGGAGAGAGTGGCAAGGTGGGCCAGGCAGGTGAGCTGCTACCCATGGGCACCTGCCAGCGGTCC-TGCCCTCTGACCTGT-GGCCTGTCTGCTCTTGCAGTGCATGCCTAGCCCAGGGCCCAGTACACA-GGCACCCAGTGTTGCATGAGTGGGGCCCGGGGCTGGGCAGCAGCCTTCTG-AAGGAGGTCCACCACTGCCCCAGAGGCAGAAACCAGGGTGG-GTGGTAA------------------------AGGCGCAC------CACTGCCCCAGACTCCCAAGGC--TGACAAAAAGCCAAGGACCG-CCCAGCATTCCAGGCTCCCAGAATGACCCCTGATCCCTTCCCACCTTGTCCAGGGGCAGCCAGCAGCAAGGGC----CCACCCCTATGCCTAGCTCAGGACAGTGGACAGGGCTG-----------CAGGGCATGGGGACCCAGGACCCTCAAATGCCACAGAAGA s mm3.chr5 116915753 1030 - 149719773 tCAACATTCGTCTTTCAACAGGAGCAGTCACAGAGA---AAAGCACTATTTCATTTTAGGGCAGGGCCACATGTGGCAACTA--------------TTTTTCCTACCAGAAAA-AATTCCCTGTCTTCCTACCTGTC--CTGCTTGCTGAAGCCAATAAGACCAGGTTCAGGAGAGGCTGGGTCCCTGCTGTTGAGCGGCAG------------------------------------ATGGGAGGGGCTGTGACAGAAACCTAGAGAGTTTCATGAGAGGCCCCAGCACAACAACCCACTATTGTCTGAATGGAAACTGC-CAGCCCAGGCAGCACCATTCCAGGATGATGGGTTGTGTTTGTCTCCGGTGCTCAGTGGA-------------GAGGAAAGTGGCAAACCAACTTCAA--AGCCTGGCAGAGTCCTC----------CACTAC--CTCTGCCAGCGA-TG--------------------CCCAACCCACCCAGCCT-----ACAGG--------------------------------------------AACCTCCCTA----CTCAAGGGGG-----------------------------------------------TGGACAGATAGGTCGCCGTGTAT--------GCTGAGCTATGAAGAGGCCCACAGCCCAGG----------AGTAGGG---------CAGGGTGCA------GGCAGCCAAGAAGGGACCCCTGGTCACTAAGCAGGATCA----TTATGTCTTTAACAAAAATTCTTTCTCA--GAGAGTGTTGTGGGATGGGCCAGACA-CTGAGTTAC--------AGCATCTGCCAGCAATCCTTGTCCTCCAGCCTGTGGGCCTGACCACTCCTATGGTCCAGGCTTGGCTTTGGGCCTGGTACACACAGCATACAGCTTGCGTGGAATGGGTACTGGTCCAGATAACCAGCTTACTGAAGTTGAGTCTGCCAATGTCATAGATGCAGGGAGTAATATGGAGTGGAAATCCTCAGTTCCCCGTCCAGCTCCCAAGTGAACTGTGAGTGCTGGTCTAGGCTTTCAAAGTGATGAAGTAAAGCTAAAACCCACCCCAGCATTCTAGGCCCCCATACC-AGCCCTGGCCTCTTCCCATCTTGGTTATAAGTAGGCAGCTGTGAGTGCTTGGCCATCTTCTTACCTGTCTTAGCAAGGTGGGTAGGGTCATGGGGGGAGCCCAGGG-ATGGAGACAGGTGCTCTTCTAAAACCACAGAACA s rn2.chr14 78693688 1036 + 107821284 tCAAAGTCCGTCTTTCAACAGGAGCAGTTGCAGAGA---AAAGCACTTTTGCACTTCAGGGCAGGGCCACATGTGGTGACTA--------------TTTTTCCTACCAGAAAATAATTTCCTA-------GCCTGTC--CCACTTGCTGAAGTCAATGAGACCAGGCTCAGGAGAGGCTGGGTCCCTGCTGCTGGGTGGCAG------------------------------------ATGGGAGGGGCTGTGACAGCAACCTAGAGAGCTTCGTGAGAGGCCCCAGCTCGACAACCCACCATTGTCTGAATGGAAACTGC-CAACCCAGGCAGCACAGCTCCAGGATGATGGGCCGGGTCTGTCTCCGG--CTCAGTGGA-------------GAGGAAAGTGGCAAACCAACTTCAA--AGCCTATCA-----------------------------TGCCAGTAAGTG--------------------CCCAACCCACCCAGCCT-----GCAGG--------------------------------------------GACTTCCCTA----CTCAGGGAGGCCCTGGAGTTCTCTCTGCAAGGCTCCATGAGTTCCTGACCAGGGTGGTGAACAGGTAGGTCGCCGTGCATCGCCGCGTACTGAGCTATGAAGAGGTCTACAGCTCAGG----------AGTAGGG---------CAGGGTACA------GGCAGCCAAGGAAGGTCCCCTGATCACTAAGCAGGATTA----TTGTGTCTGTAACAAAAATTCCTTCTCA--GAGAGTGTCACGGCACGGGCCAGACA-CTGAGTTAC--------AGCATGGGATAGAAATCCTTGTCTTTGAGCCTGTGGGTCTGACCACTCTTATGGTCCAGACTTGGCTTTGGGCCTGGTACACACAGCATACAGCATGTGAGGAACAGGTACTG----------------------AATGGAGTCTGCCAATGTCATAGATGCAGGG---AAGGTGGAGTGGAAATCCTCAGCTCCCCATCCAGCTTCCAAGTGAACTGTGAGTGCTGTCCTAGG-TTTCAAAGCTATGAAGTAAAGCTAAAACCCACCCCAGCATTCCAGGCCCCCAGACC-AGCCCTGGCCTCTTCCCATCCTGATTAGGAGTAGGCAATTGTAAGTGCTTGGCCATCTCCTTACCTGCCTTAGCAAGGTAGGTAGGGTCATAGGGGAAGCTCAGGGTATGGGGCCGGTTGTTTTTCTAATACCCCAGAACA a score=95627.000000 s hg15.chr4_random 725707 989 + 1219494 -----------GATTACAACACCCCTGGATCGAGGCTGAAGGAACTCCCCCAAACGGAGCTGCCCATTCACACAGTGTCAAGGGCAGGGAGGCCCTAGCTCGGGCCTGGGGA--------------------------------TCTGGCC------------------------------------------------TCCCATGAGTTAGACCTACTTTCACCCCATTTCAC---AAGGAGGACGCTGAAGCCCTCAG-ACGAAGCCTGCTCTGAGCCCAGAACTCAGCTCCCCTCTGGTGCCTGAGAGAAGCTCTGTGCCGCTTCCC--TCGGCCCCTGCCTC---------------GCGGCCTCAGCC-------CCGTGTGCCATGGCACGCACACTGCCTTCTTGAGGCTGTTGCCTG-------CCAGCCTGGCTGACCCTGGGGTGGGGAGCTGGCCTCCCTCTGCAGGCTTGAGCAGACAGGCACCCTACGCCCCACCCAGCTGCCTGGAGCAGG-----------------------------CTCAGCAGGAGCGCAGTAAACATCTGATTCACAAGGAAGCAGAGGGCACTTCTTGGAATC--AGCTCAGCTACAGGG-ATGGGGGTATGGATACCACGAGGGCGCTCTGCCAACCCCTCAGGGCTCCTCTGATCTCCCCAGGCAACTGCTCCAGGTGGCCGAGCCCACATTCTTCCCAGAGGCCAGCTGACAAAGATGGACCAGATGTGACCGGAATC----------------CATGAAGAAAGGGCCAGTCACCTCAGGGCGTTGGGGCCAGCAGTTC-CAGCACGATCTGTGATCGGGGGCCGGGAAACCAAGCAGGGCCTGACCACTC----TCATGGCCTTGGAAGTTACAGAGCCTGGGGAGAAGAGAGAAGGTTGGGGGAG-GGCACCTTTCTCCCCTCCTGGGAGCCTG------CACCACCTCGAACTCCTGTCTGACCCAGGTCTCCACCCGCCCCGAACCTGGGCACGTGCTTCTCTCGCGTCACCCTTGAAGG--ATGAGTGTAGTCAGGGGCCCGGCACGGAACCCAAATCCAGCAGCGTGGTCCAgagccagggacttctgtcatcccgttttgcagatcaggaaactgagggtcaggaagtgcaattc s mm3.chr5 116916958 1067 - 149719773 acCACAGAACAGAGTATAATACTCTGAGGTCCAGGTCATAGAAA--CCCCCAAATTAGACATG---TCTGTTCAGGGACAAAAGC-AGGAATCACCAGCTCAGGCCTGAGGAGACTGCCTTGAGAGGCTTCTCAGGTGAGTGC-TCTCATCTGCTAGTGCTTGAAGTCTGAGGGAGTTGTCATTTAA-TGTCATTGAAATCCCATTAGCTAATTTTGATCTGATCCCATTTCAC---AGGGAAGGTGCTGAAGCCCAAAA-CCTCAAGTTGGACAAGGCCCAGATTGTGACTTTGTCTTGGTTCTTGTGACAAGCTCTGTGCC-TTTCCTGGTCAGCCTCTGCTCTCAGAAC-CGAGGAAAGCAACTTGAGCTGGCTTAACCCTGGGCCATGGGA-GAGCACAGCTCT-----GGCCATATCATGCATATTACCAGCCTGGCAGATCCCAGGCCAAGAAACACACCT---TCTGCAGGCTCAGGCAGGCAGATACACTGCACCCTACTCAGCGGCCTAAAGCAAGGGTGCTTGGCTGTAGGCCATGCCACCATTCCCAGTGGGTGTGTAGTAAGCG--TGATTCAAAGGGAAGTAGACAGCAATTCTCGGAATTAGAGTTTGGCTGTAGGGCATGAGAGTCT--ATGCTACCAGGGTGC-CTGTTTGCCCGTAAGGCCTA--CTGACTTCCCTGGATCACTGAGTAAAGTGATCAAGCCAATGCTATTCCTGGAAGCCAGCTAGCAAAAACCACTCAGGTATTTCTGGGACCTCT-ATGGCCAGCTCACATGGACCAAGG---AGTTGTCTCTAAATCCTGGACGCAGTGATTC-CTTCAT--------------------GGAGCAACAGAGAGTCCAATCACTTGGTGCTAGAAGCTCAGAAGTCA----GCTGGGGAAGAAGACAAACAGCAGAGGGAACGGCA------------TCTGGGTACCTGTGATGCCCCCATCCCAAAGTCCAG------CCAGCTTTC-----------------------TGTTTCATCCCTACTGTCCCCGGAGTTCATGGGTGGGGGTGGGGCACCGATACAAAGCCCAAGTCCAGCCATGTGGCCC---------TACATCTA-CACTTTGCTTTACAGAACAGAAAAGTGAGAGTCAAGAAGTATAATTT s rn2.chr14 78694713 1064 + 107821284 ACCCCAGAACAGATTATAATACTCTGAGGCCCAGGTCGTAGAGA--ACCCCAAATGAGACATGCAGTCTGTTCAGGGACAAGAGC-GGGAACCCCCAGCTCAGGTCTGAGGATGCTGCCTTGAGAGGCATCTCAAGTGAGTGCCTCTCACCTGTAGGTGCTTGAAGTCTGAGGGAGTTGTCTTTTAAATGTCATTTAAATCCCATTAGCTAATCCTGATCTGATCCCATTTCTCTCGGGGGAAGGTGCTGAAGCCCAAAAACCTCAAGTTGGACAAGGC------TATGGCTTTGTCTTGCTTCT-------------GTGCC-TTTCCTGGTCAGCCTCTGTTCTCAGAACTCCAGGAAACCAGCCTGAGCTGGCTTTGCCCTAGGCCATGAGA-GAGCTCAGCCCT-----GGTCATGGCATGCACATTACCAGTCTGGCAGATCCCAGGCCAAGAACCACACCTCCTTCTGCAGGCTCAAGCAGGTAGACACCCTGCACCCTACTCAGCGATCTAACGCAAAGGCGTTTGGCTATAAGCCATTCTACCATGCCCAGCGGGTATTCAATAAACA--TGATTCAAAGGGAGGCAGACAGCAATTCTCGGAATCAGAGTTTGGCTGTAGGGCATGGGAGTGT--ATGCTACAAGGGTGC-CTGACTGCCTGTGAGGCTTC--CTGACTTCCATGGGCTACTGCCCAAAGTGACCAAGCCAATGCTATTCCTGGAAGTCAGCTAGCAAAACTCACTCAGGTATATCTGGAATCTCTAATGGCCAGCTCACACAGACCAAGG---AGTTGTCCCTAAATCCTGGGGGCAGTGATTTACTTCAT--------------------GGAGCAACAGAGAGTCCAATCATTTGGTGCTAGAACCTCAGAAGTCA--GCGCCGGGGCAGAAGAATAAAAGCAGAGGGAACAGCA------------TCTGGGTACCCATGATG-CCCCATCCTGAAACCCAG------CCGGCTTTC-----------------------TGTTTTATTCCTACTGTCCCTGCAGTTCATGGGTGGGGGTGGGGTGCTGACACTAAGCCCAAGTACAGCCATGTGGCCC---------TACACCTG-CACTTTGCTTTACAGAACAGAAAAGTGAGAGTCAAGAAGAATAATTT a score=21367.000000 s hg15.chr4_random 726696 333 + 1219494 ----------gcctacaaggCTCAGGTCTCCTGGCCCGTGGCTGAGGGCCAGTCCCTTGCTCTTGGCACCATCCTGTCTACCCTCCCGTGCACAGGCCAAGGGGTGGTGAGGAGGGTCCAGTGCCCCAGGGAAGGGGGCCAGCCAGTGAGCCTGAAATGCTCCCTACCACCCCCTCTGGGACTTAGGCAGCCCACACGTGGGACT-GTCTCCAGCCCCTCGGTGTCCAGACAGGGCCACCAGAAGAATGCAGAGGCCTTCTGGGGAGGAGCCGCCTATCCTGGAGGAAGGATTCCAGGGTCTGCACGGCCCCTTCTCCTTGCCTCCCAGGCCCCTCCATACCCT s mm3.chr5 116918216 271 - 149719773 aGTGTAATTTGC-TGGGAGCCTCAGGAC-CCTGAATCATGGCAGGAGGAAGCAGCCTTTCTCT------------------------------GGGCTGTGGGGCAGTGAGGTGGGT------------GGA------------AGTGGGCATGGAAAATTCCC-ACAGCTCC----------TATTCACTGCACACACGAGACCGATTTCCAGCCCATGAATGCCCAAATAGCACTACTGGAGGACTGCAGAGGCACACTGGG--GTACTCGACTCTCC---GAGGAGGACTCTGAGGTACAAAGAGTCCCCTTTCC-CACTCTCCAGACTCCCCCATGCTTT s rn2.chr14 78696136 267 + 107821284 aGTACAATGTGCCTGGGAGACCCAGGAC-CCTGAATCAAGGCAGGAGGCTGCAGCATTTCCCT------------------------------GGGCTGAGGGGCTGTGAGGGAGGT------------GGA------------AGTGGGCATGAAAAATGCCC-ACAACCCC----------TGTGCACC-CACACACGGGACC-ATCTCTAGCCCTTGAGTCCCCAAA---CATGGGGGGAGTACTCCAGAGGCACACTGGG--GTACTTTACTCTCC---GAGGAGGACTCTGAGGTGTGAAGAGGCCCCTCTCT-GACTCTTCAGACTCCTCCATGTTTT a score=12176.000000 s hg15.chr4_random 727030 305 + 1219494 ACCACACCTGGCATGCAAAGGCCACTCCCGTCAAACTGGTCTCCCACCCTCCCTACCGCCCGCCTTTGGCTTAGTCTGTCTGTACCTGC---ATGGCTGCCCGCCCGGCTCAGA---TCCCTCCTCCTGACGGCCCACCCTGTATTCATTGGCCCGAGGGGTGGGAGCCGCTCCACTGCGTCTGGGGTAGGACAGCTCTCACCTT------GTGGCAAATTCCCCGTCTTTTCCCCGCCAGCCTGCCCTTCTCCTCACCCACCCAGGCTGCACAGTGATGGCCAAGCCACCCGGTTATTAAAGAACTATATAC-TCTg s mm3.chr5 116918580 195 - 149719773 ------------cTGAAAAGGGCATTTTGATCAA--TGATTTGCCATTCTCCCTG--GTCTGTCTGT----------------CCCTACCTAACAGTTTCATGCCCAGCCCAGAGAATCCCTTTCCC----------------------------------------------------------------ACAAATCTTGCCTTTCCTAGGTTCTAGGTTCCCCATCTCCTCTGC-TCAGGCTGCCCACTTCCTCTGCCCAGCAG--------------------------TGCTATAAAAGAGCCGTATATGTCTG s rn2.chr14 78696426 201 + 107821284 ----------------------CATTTCGATCAA--TGATCTGCCATCCTCCCTG--GTCTGTCTGTTCATCTGTCTGTCCGTCCCTTCCTAACAGTTTCATGCCCAGCTCCAAGAGTCCCTTTCCT----------------------------------------------------------------ATAAATCTTGCCTTTCCCAGGCTCTAGGTTCCCCACCTCCTCTGC-CCAGGCTGCCCACTTCCTCTGCCAAGCAG--------------------------GTTTATAAAAGAACCAGACCTGTCTG a score=78685.000000 s hg15.chr4_random 727403 770 + 1219494 -GGACAGAGAGTGAGGAGGGCA--GAGCCTGCCACA-----------------------CATAGTCACTGACCTGGGGTGTCCCCACAAGGGAGCTTTTGAGGACAGAACGCAGGAAGACCCAGGGGCTGCCCAACACTGGCCACTCCTGATGGACTCAGGCCTT--------AGTCCAATGTGGGCAGGAACCTGGGAGCCTTGGCCTTTACCCAGGCCTCTCCAGGCCAGTCCCTGCCCCCACCCAAAACAGGACATACAG------CGGCCCTGAGGACCAGGGAGAGCACCCTCAGCGACCCACTGTCA-CTGAATACCAAGCACATGTCACCACCACCACCATCCCCCCTACGGACActcatagccacccaccaggtacaaagtgcttcacagccctcaggtcatggatgagaaaacggaggggtggcagggggaagcctcctggccatgatcacacagctggaaactggtggcatctgagttcacacccaagatcctgg-ctgagtttgcgcccttcctccctgcccctcAGGAACCAAGGCTGGCCATCTCGTCTCTCTGGGCCCCTGGACTTCCCGTCTGTGGGCCTGCTTGTGTGCGTGCATCCCTGGGGGG------------TGGGGAGCTCCAGCTGACTCAGCACCCTGCTTCCTCTGTCCAT---GTGGGCAGAAAGGGCCAAGGCAGGCCCAGAGCCTGTCCTCCCTCTGTCTGCCTCTTC-AGGCCAGCCTCCTTGGTGGGCTCCCCCATGATCCTGGAGGCCTGGGGACTCCCTGAAAGGCCAGGTCCCCTGTCAGCACCCCTCTCACCAG s mm3.chr5 116918775 707 - 149719773 TGCCCAGGGAATCTGGAAGGCCATGAACCAGCCAGATGATGGCACCGTA--GGGTCTGCCAGAATCTCTGACCCTTG--GTCCCCACAATGGAGC-TTTGAGGATGGAACTC----------------------ACACTGGTCAGTCTTTGTGAACACAGGTGTTTGCCCACAGGGCCAATGCAGGCAGGAACCTGGAAGCCTGCCTTATGCCCCAGGCCTCTCCAGGCCTGGCCTTGCCCACCTCAACCACAAGACAAAATGGCCTGTTGTCCCT---GTCTGAGCAGCACACACAGGGAAACACCCCAGCATCGGAGTCTCATCTAC---TCACCACTAGCA-------GACTGTGGGCACTCATAACCACCC-CTGGGTAGAAAGTGTTTGCCACTCCTCATGTTACAGATG---TAATGGAGGTTCAGCGGGAGGGAA-CGCCTGATGCACAGCATGTAGTTGAA-----------------TTTGAACCCAAGCCTCCAGCCTGTGTTTGTGCCCTTCC-ATCTGCCCTTCTATGACTAAAGCAGGGCGTTTTGACTCTCTGGACCTTTTGAATT----TCTGTAGGCCTACATATGCACATGCATCCATATGTGGACAAAAGGATACTGGGG-------GCTGACTCAGCACCCCACTTCCTCTGTCCAT---GTGAAAAGGAAGGGCAAAGGCAGTCCTGGAGTCTACCCTCTTCCCTTCTGTCTCTCCCAGCCCAGC---------------------------------------CTCCCCCCAAAGGCTAGTCTCCCTT-----TCCTCTCCTACCAG s rn2.chr14 78696627 739 + 107821284 TGCCCAGGGAATCTGGAAGGACATGAACCAGGCAGATGATGGCAGGGCAAGAGGTCTGTCAGAGTCTCTGACCCTTG--GTCCCCACCCTGGAGC-TTTGAGGACAGAACCC----------------------ACACTGGTCAGTCTTTGTGGACTCAGGTGTTTACCCACAGGACCAATACAAACAGGGACCTGGAAGCCTGCTCTGTGCCCCAGGCCTCTCCAGGCCTGGCCTTGCCC------ATCACAAGTCAAAATGGTCTGTTGTCCCT---GTCTGACCAGGACACACA-------CCCCCGTCACCTGAGTATCAGCTGC---TTACCCCTAGCA-------GACTGTGGTCActcataaccaccc-tcaggtagaaagtgtttgccaaccctcatgttacagagg---taatggaggctcggcaagaggaaa-tgcctGATGAATATCATGTAGATGGA-----------------TTTGAACCCAAGCCCCCAGCCTGGGTTTATGTCCTTCC-ATCTGTCCTTCTATGATTAAAGCAGGTCATTTTGACTCACCGGGCTTCCTGGATT----TCTGTAGGCCAACATATGCTCATGCACCCATATGGGGACAAAAGGATACTAGGG-------ACTGACTCAGCACCCCACTTCCTCTGAGAAGGAAGTGAAAAGGAAGGGCCAAGGCAGTCCTGGAGTCTACCTTCCTTCCTTCTGTCTCTCCTAGCCCAGCCTCCTGAGCGGGCTTCCATATAACCCTGTAG----GGGGCTCCCCACAAAGGCCAGTCTCCCTTTCAACTCCTCTCTTGCCAG a score=12769.000000 s hg15.chr4_random 728173 515 + 1219494 ATGGCCCTGGCTGGCAGTTCCTAGACACGGCTGCCTATCTGTCTTCCTTCTGCCTGCCCCCTCCAGGGTGTGCCTAACGCAGGGCACAGAGCCAGGCAAAGGGAGCCTGGCGGGTGGCAGGGAGAGGGGATAGACAGA------ATCCTCACTCCCTTGCAGCCCTCGTCCCAGGCCTCCTGTCCTGCCAGGAGTGGAGTGCCTGGAGTGGGGCCCTGAGGTTGGGCTCCAAGAGGGCCCTTCGACGGTGTCTACGTAGAGGAGACAGTGGACAGAGTGGGAAGAACCAGGAGGGGGTGGAGCCCAGCCCCTCCTCTGGTCCCACAGGGCCTGAGCCAGTGAGGGCAGGAGCTTGTCCAGGCTCATGGAGTTGGTGCAGGGCTGACCTGAACCCAGAGGCTTGCTTCGGCAAGGAGGAGGCTGTGGGCCCTGCCTTCAGGCGGTTGTGGAAACAATTCTACA-------------CATTGCATCACCGGCCCA-----TGTCACCTGCAAGGCCACACACATGTCATCCAGGCAGGCTG s mm3.chr5 116919482 289 - 149719773 AAG------------------------------------------------------------------------------GGGCAT--------------------------------GGGAAAGGAGGTGGACAGACCTGAGGTTGACATCTCCTTGGAGCCC---TCTCATGCC----------CCAGGAGTGGAGAGCTAAATCTGGGGCCCA-AGGCTGGGCTT--------CCCT--------------------------------------------ACCAGGAAA----AGAACGCTG---------TGGTCTAGAGGGACCGAAGCCAGTGAGTACAACA-----------CGCACCTAGATCA--CAGGGTTGACCTGAGTCTGTATTCTTGCTCC-----------------CAGCCCAGCGCCTA----GCTCCTGAACCCATTCTGTG---------------TTTCACCATTGATCCAGCAGGTGATATT--CAGAGCC----------CCTTCAGGTGGGATG s rn2.chr14 78697574 308 + 107821284 AGA------------------------------------------------------------------------------GGGCAT--------------------------------GGAAAAGGAGGTGGACAGACCTGTGGTTCACATCTCCTTGGAGCCA---TCCCAGGCC----------CCAGGAGTGGAGAGCTTAATCTGGGGCCCT-AAGCTGGGCTT--------CCTT--------------------------------------------GCCAGGGAA----AGAACACAG---------TGGTCCAAAGAGACTGAAGCCGGTGAGCACAGCA-----------CTCACCTAGGTCACCCAGAGTTGACCTGAGTCCATTTTCTCACTCC-----------------CAGCCCAGCACCTA----ACTCCTTGACCTGTGCTGTGAAACAATTCTGTGCATCTCACCGATGATCCAGTAGGTGATATTTCCAGAGCC----------CCCTCAGGTGGGgtt a score=46959.000000 s hg15.chr4_random 728688 665 + 1219494 --TCCACCCCAGCAGCCCACACGGAGTA--CCC----GCCCCTGGCCACAGCCAATTCGAA-GGACTTAAGTGTGGCCATTAG-------ACC-----AGGaggcacagctgtccccagtgtcaacagatg--------------------------------------------agcaaactgaggcacagagaggggataggaggtgc------tcacggAAAGGAGCACCAGCAGAAGGCTCCCCACAGCAGGGCTC--AGGCCCTCAATACCCCCAGGGAGCCGAGGCCCAGAGCAGCGGGAAAGTGCTGGGCTGCAGGGAGGCCAGCGTACAGGTGGAAGGGGCTGTCCCCGCC-----------CCCTAACTCCTCCAGTCCCTCTGCCACCCCTGAGATTCCCTGTTGCCCATGAGAGTCTCAGACGCCCGGCTATCA----GTCACTCACACTTCAGTGTGAATCAGCGCCAGTGGGCGGCTTT--TCTTGCCCTCCGTGAAGCGCGGCCGCTGCAG--AGGGAAGTTTGGATTCCGGGAAGGGCGGAGAGCGAGTGC-CCGCCGCAGCCTTTG--AGTCTTGTGGGGAGGGTCGCGTAA-AGGGGCCCCGCCGCGGG----------GCCAGAGGGGCGCGAGGGGTGCGAAACAGACGCGTCGCACCGCCTCCCACCCCTGAGCCCCCGGCAAGGGACACCCGGCCCCCGCCCCGAAGCCGCGCTCCCTCGGGCACTGCCCGCCGTGCCCAGGCCCCGTGC s mm3.chr5 116919771 628 - 149719773 TAGCATCCTTAATAG-TCACATGTAGTAA-TCCCGAAGTCCCACGCTGTGCCCAGCGGGGGGTGGCTTCTCTAGAGCTCTTAT-GGAGTAACCTGAC-AAAAGGCACAGA-ACTACCAGTGTCAAAGAATG--------------------------------------------GACAAACAGAAAGGCAGAAAGATAACAGGAGCTGCGCAGGGTCATGGGAGGTGGCAGAGGGAGTTGGCTC----CAGCAGGACTC--AATCTGTTAAC----------AGCCAAGGCCCAGAGCCACAGAAGGGTG------------------------GAGGTGGAAACCCGCATGTCCGCT-----------CTCTGAACACT------CTTGTATCTTCTCAGAGACTCACTCCTCCTCAAG---TCTCCAAACTCCCTACACCCACTCAGTCATTCACGCGTCAGTGTGAATCAGCACTAACAGGTGGCTTTTCTCTTAAACTTCATG------AGCCTCTGAAGGAAGAAACCTTTGGA----GGGAA----TGTAAGCAAATTTATCTCCCGAGTCTTTGGAAACCCCGCTAGATGTGCCCTGTAACCTAGGCCTAGCAACGTGTGCCGGAGGAGCCGGAGGGACCGGAGGGACACAGAACACTCGCCAAAC--CAGCCCTATCTCCTAGACT---------GAACGCCCA------GCCCTGAGCCCAGACTGCC---GCCGCCGTCCGCCCTGAGAACACCACTCCC s rn2.chr14 78697996 685 + 107821284 tagaaTCCTTAACAG-TCACATGTAGTAAGTCCCGAGGTCCCACACTGTGCCCAGCAGGGG-TGGCTTCTCAGGGGCTCTTATTGGAGTCACCTGCCTAGGAGGCACAGA-ACTAGCAGTGTCAAGGAACGAGgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaACAGGAGCTGCGTAGGGTCATGGGAGGTGGCAGAGGGAGTTGGCTC----CAAGGGGGCTCTCAAACTGTTAAC----------AGCCAAGGCACAGAGCCACAGAAGGGTG------------------------GAGGTGGAAACCCTCATGTCCGCTAACCTACAACGCTCTGAACAGT------CTTCTATCTTTTCAGAGACTCACTCCTCCTCAAAA-ATCTCCAAACTCCCCACACCCA----GTCATTCACTCGTCAGTGTGAATCAGCACTAACAGGTGGCTTTTCTCTTAAACTTCATGG-----AGCCTTTGTGGGAAGAAAAGTTTGGA----GGGAA----TGAAAGCAAATTCACCTCCTAAGTCTTTGGAAGCCCCGCTAGATGAGCCCTGTAACCTGGGTCTAGCAACGGGTGCCAGGGGAGCCGGAGGGACTGGAGGGACCCAGGACACACGCGAAACAGCAGCCCTCTCTCTTAGACT---------GAACGCCCA------GCCCTGAGCCCAGACT------GCCGCGGTCCGCCCTAAGAACCCGACTCCC a score=12375.000000 s hg15.chr4_random 729353 109 + 1219494 GTCCTTTGGCAAGGACACGGAGGCCCCGGGGCCCGGGGGAGGC----------------TGCTGCGCA--CCCGAGACC---CCCGACACCCGC------CCATACCTGCCGGGACCCTGAGACTCCCCCGAGACC s mm3.chr5 116920399 127 - 149719773 ACCTCACAGC-GGGACAC--AGGTTCAAGGGACCCAGGCAGGTCTCTGAGACACCACTGTGCCGCGCATGTCCACGACCCGTCCCGAAACCCATGCAGTGCCTTACCCGCCGGTTCCCAG------CCCAGGGACC s rn2.chr14 78698806 127 + 107821284 ACCTCACAGC-GGGACAC--AGGTTCCAGGGACCCAGGCAGGTCTCTGAGACACGACTGTGCCGCGCATGTCCACGACCGGTCCCAAAACCCATGCAGTGCCTTACCCGCCGGTTCCCAG------CCCACCGACT a score=67914.000000 s hg15.chr4_random 731404 754 + 1219494 CACCCCTCACACCGGCGCTGGGGCTGTGACTCTACCCACCTACAGCCTAGCTCTCGGGGCTGAACTTAGACCCCAGTGAGGGAGTAGATGGGTGCTGGCTGGCTGGGGTGCTCACTCTCTGGGGTGCCTGCTCACATCCCCACCTGTAAGTGTCCTGGGCCTGGCTCCCCAGGTCTCAACTCTGCTCATCCCAGCATTGGGTAGCCTGCAACTCTTCTGCCCACCCCCCACTCTGGGCTATTTCACATTTTCCTAGCAGGGAGGAAGAGATAGGAACTACAGCCATTGTGGAAGTGGCTGGGCTCAG---------------CCCCATCCGACGTTCAGTGCTGC----CACTGTTAGCACCGCATGGGGCTGCGTCACTCCTGTAAGAGGCCACATGCGGAGGGAGCTCCAGGCTGGGCCAGACTGGTCTAAGGCTCCTGACAAAACACTCATGACCTTGGGGCTGTACATCTTGATGTCCCTGATGTCCAGTTCAGCTAAATAAATGCCTGGCCCCACACCAGACCCCGGGGACCC-AAGATGATACAAGG-AAGTCCCTACCCTTGTGGCTCACGAGAGGAGCAAATGGACAAATGAGCAGATGCCATTGGGTCACAGCAAGTGTCCTGTTCCCAGGGGACCAGCTGGGGAAAGGGGCAGAGACCGGGAGGGGAGTGGAGCAAAGCCAAACGTCGGTGCGGCCCCGCCAGGGCCTGACTACAGGGCAGGGTGTACAGGGCTGGCCT-CAGATGCCAAGCTCAGAGTTGACGGA s mm3.chr5 116921437 629 - 149719773 CATTCCTGTCTCTGCCCCCAGGGC---AACACCACCTGTCCACAGTTTAGCTCTCA----------TGGATCCCAGAGGCTGAGGAGACAGGTGCTGACTGGTGGAGATGCCATCCCTCTGGGGTACCCAT-CATGTTCCCACTT---------------CTGGCTGCCCAGGTATCACCTCTGTGTACC-------TAAGTTGTCTATGAT-CCTCTGCCTGCCC--------AGGCTGCTCCATCTTCTCCT-----GTGGAGAGTGCCAGGTGC-ACAGCACT-----AGGCTGTTTGGCCCAGAATCCTATACTTTCAGCCCCTCCTCTGTCCACTGTTGATTGGCCCCATCAGCACCTCACACAGCTGCCTTACTCCTA---------------GGACTTGGCTCAGGGGTGCAAAAGGCT-----------------------------------AGAC-------------ATCCCTTGCATCAAGTTCAGTTAATCAAATGCATGGCCTCATTGAGGGCCCTGGGGACCC-----TGATTCAAGGCAAATTCTGATCCTTATGGCTAATGGG------AAATGGACA------CAGATGCTATCATGTCACTTTGCATCTCTTGTCCCCAA------AGCTGAGGGGAGGGACAGAGACCAGGAGGGAAGTAGAGCAAAGCCAGACATTGGTGCCA-CCTGCAGGAACCTAACTGAAG----GTATACGCAGGGTTGGCTTCCACATGTCACATTCAGAGAAGATGGA s rn2.chr14 78700411 601 + 107821284 TATTCCTGTCTCTGGCCCTAGGGT---AACACCACTTGCCCACAGTTTAGCTTTCA----------TGGATCCCAGTGGCTAAGAAGACAGGTGCTGACTGGCTGAGATGCCCATCCTCTAGGGTACCCAC-CATGCCCCCATCT---------------CTG-CTGCCCAGGTGTCACCTCTGTGTACC-------TAAGTTGTCTATGAC-CCTCTGCCTGCCC--------AGGCTACTCCATCTTCTCCT-----GTGGAGAGTGCCAGGTGC-AGAGCACT-----ATGCTGTTTGGCCCAGAATCCTACACTTTCACCCCCTCCTCTG-------------------------------------TGCCTTACTGCTG---------------GGACTTGGCTCAGGGTTGGACAGAGCT-----------------------------------AGGC---ACATC----TACCCCTGGTGTCAAGTTCAGTTAATCACACGCATGACCCCATCAAGGGCCCTGGGGACCCTGAAATGATTCAAGGCAAATCCTGATCCTTATGGCTAGCAGG------AAATGGACA------CAGATACTATTGAGTCACTTTGCATCTCTTGTCCCCAA------AGCTGA-GGGAGGGACAGAGACCGGGAGGGAAGTAGAGCAAAGCCAGACATTGGTGCCA-CCTGCAGGAACCTGACTGAAG----GCATAGGCAGGGCTGGCTTCCTCATACCACGTTCAGAGAAGATGGA a score=1096.000000 s hg15.chr4_random 733167 33 + 1219494 ctgtgccacctgcctgctccctgagttctctct s mm3.chr5 116923510 33 - 149719773 CTGGGCCATCTCCCTAGCCCTCCTCTTCTTTCT a score=17054.000000 s hg15.chr4_random 733219 239 + 1219494 tggccacactggcctcctgtctcctccagcaccgcagacacattcccacctcagggcctttgcacttgccattcctg-----cccctagatcacccttggcgggtgtgcctggacc----cctcgcttcccttggtctgggc---tctgcttccagggcacctGAGTTACAAAATAGACTCCCAGTGCATGATTGGTGAATGAACAGACAAAGGCCTCAAGGGGCAGCCCCAAGGAAGGGGCTAGGTAGGt s mm3.chr5 116923756 213 - 149719773 TGTCCACTCT--CCTTCTGTTCCTTCCTCTTCTACTG----------ACCTTTGAACCCCAACATCTGACACATCCAAACTCCCTTTAGAACGCCATC--------TTACTAGAGCAAGACCTGGCTTAcctca----gggctcatccacttcctgga----------acaaagtagatgcttagtaaatggctggtgaaggaaAATAAAAAGCCAACAGGTAGAGTTCTCCGGGAAAGG----GACTGCC s rn2.chr14 78702167 214 + 107821284 TGTCCACCCT--CCTTATATTCCTCCCTCTTCCCCTG----------TCCTTTGAACCCCAACATCTG-CACACCCAGGCCCCCTTTAGAATGCCATC--------TTACTAGAGCAAGACCTTGCTTGCCCCG----GGGCTCATCCACTTCCTGGA----------ACAAAATAGATGCTTAATAAATGGCCAGTGAAGGGAAATACAAAACCAGCAGGTAGAGTTCTCAGGGAAGGGA--AGACTGCC a score=139436.000000 s hg15.chr4_random 733748 1936 + 1219494 ATCCTAGCCAGGTTTTGGAGCTGCCACCTGGGTCCCGTGTCCAGAGGACCTTGGAAGCATGGACCCTGCCCTCCCACCTGTCCCTGTCCCCAGGAGTGGCCCCACAGTGATACAGTGTACCACCTCACCAGGCCGCCTCGCTAGGAGAGGCA-ATTCCTGAGTAGGGCCAAGGCCACAGGCTTCCCACCTGCTTCCCTGGGGATAGGAGGGGACAGGTTCCCACCCTACCTCCCCCAATCCCCACTCCCTGGGGGAGGCTGTGTGGAGTCATCCTGCCACACAG---TCCAGTCCCCTGGCCACAC-AGCCCA----------GCACTGGAGGGAGGGGCAGAGGGGGTGTGGGGGAGGATTGTGGCTCATGGGAAGAGGAGTTTGAGGAGGCAGGCTGGGCCTCACAC-----GCAG------GCATCAGTCTGGCTCTGAGGACAGGGCTGGGGGCTGGCATCTCTCCCAGGAGGCTGGGCTGGTGGCAGGCACTCTGGCAGGGAGGGCAGGCTGGACAGGAGTGGCCCCTCCCAGGCTCTGGGCCATCTCTGCATCCCAGGCCAGGCC---TGGCTGCCTCACGC----CTTGCCCTGGGTGGGATGGGGAATATTTTCTCCTTTACC-----------GAATGAAGGGGAAAGGAGCAGCCTGGGGCTGGAGGGGGAGCAGTGGAGGTTGGGTGGGATGGTAGGA-CGTGTGTGCTGGTTGAGGGGTGGAAGCATGGAGGCCCGCT-CAGGTCTCAGCCAGACCCCACGCCAGAGTGCCCTGCACACTGGCCTCCCCTCTGCCTCCACTGCCCTCCAGCGT-CATCCCGGGAAAGCCAGCTCAGTAGCATTACCCCAGGGGACCTCCCCAGACCCCCACAGTCATGCCCAGATGTGCACCTACATCCCACCACACTGCCCAGAACTAGCCTTCCTCACCACCCCATCCCACCCCCTAGGCTGGGGCGCCTTGAGGTCAGGGCTCTTCCAGTGGCTCTGGTCCCCAGGATGGTCCAACACGGGGCCCTGCTCAGAAAACATCCTCAGTGGGTGGCCCCAGCCTGTGGGCTTCTGGCCAGCTGCCCTCAGTGAGCCTGTGGAGGGTGGGGCCCACAGCCAGCTTGCCCACTGCCCCTCGTGCCTGGGACAGGCCTGGCTTCCTGG-CCAGCCTGAGAGCTGGTAAAGGCTGACGAAGTCGGCGAAGGCTCTTTGGGGACAGTAGGACTGAGCTGGGCTCCCACAACCTGGGAGGACTCTCCTGGCAGGGGCACAGCGCTAGAGGGCAGAGTGAGGGAAATAGAGCCAGAGTTCACGCCAGGTCAAGGGCCAGC----------CAGCGCCCCCAGGCCAC-------------------------CAGCACTCCCCAGGAGGGCCTGCCC-TGCCTGCCTGGCTGCCACACCTCTAGCCCAGGTCAGCTGCTGGCTCTGTCCTCTGA--GGTTTGCTTGAGTCAATTTTCTACATAAAACGAGAGTGTCAGGCAGGTCCCATTAGGAAGCTCTATTTTGTA--ATACCAGGCCTGTGGGTGG-AGGACCCAGGACCCACGCACGCACTGGCTTTTCTATTTTTACATCCAGAGTCGCCTGCTCTCA-CCCCCAGAGCCCAATTTGGAACTTGAAAGCAGCACATTCTATTCTGGGGC-CACTTCCGGCCCCTGTGCCGTG--GGAGGTGGGTGTTTGTACACAACAGCGTGCCCCACCCGCCTCCCTCCAAAACACC-CCCTCTCCTGTCACCCCCCACCCCCACCACCACCCCCTGCCAGCCACGTGACCTTCAGGAACACACTGAGATCTGGAAGGGGAAGCCCATGTGGGGCTTGGGAAGGGGAAGCTGTGGCCTTCAACAGTGGTGAGGTTCCCACGTCACCCCAAGGGGTCCCCACCTATCACCCCAGCCCAGGGTCAGGAGAGGCAGCCAGCCCTTCCCCAGCCAGCGCTGGACACTGAGACATGAGGGTGCAAGGTGACCTGCGTGACAGC---AAAGCCCCTC s mm3.chr5 116923969 1614 - 149719773 TTCCCAATCAGGC-------------------TCCTCTGTCCGA--------TGAAACATTGA-----ACTGCCTTCCTTTTTCTCTTCCCAAGAATGGCCTCATGGTG--------------------AGGCTGCTTCCCCGTGGCAGGCCTGTTTCTGGGTAAGACCAAAGCTGAAGGCTACTGACCACTCCTATGGGGGACA-------GCAGG---------AAAATCCATAGACCAAAGCATTGAGGGTGGGTAGGGAAGGGATGGG-------TAAGGCCTGGAAACCTTGTGGATGATTTAGCTCA-------------CCACAAAGAGATGTGGATGGG-TGGGGGGCAGG------------TGGGAGAAAAGTT---------------GGCCTCAAACATCTGGCAG-----------------GCTGTGAGAACAAGGCTGGGT-------CCTCTGCTGGGAGAACGGCCTAACGTCTTG------------------------------------CCTTCTTGGGTTCTAGGTCTTCCTC-TATCCAGGGACAGGTTCTGTGGCTCCCTCACACTGGACTTGTTCAAG--GGGAGACAGAAATTTTTCTCCTTTGCTGGTGTGAGTCAGAATCAAGGCAGAGGGAGAAGC--------AGAGGGTAGGGAGTGGAGAGAAGCTGAAGGGACTTCT-TAGGCCAGGCTGTAGAAGGG-GTCCGCACAGGTCCGCAATACAGGTCTGGGCCATACTCCAAGCCATGGCTCT-----TACAGGCTTGCTTTCTTCTACTGTGCCAGTTCTACATGCACTCTGGGAGAGTCAGCTGAGCATCTCTG-CCCAGGAGGCCTTTCCAGGCTCCTGT-GCCATG---------------------CATCACCCAGTTTGTCACTTGCAGCTTTCGACACAC------------------------CCTGCAGTGTAGGACTCTACAA---------------------------------GTCCTGCTC-----------------CACTGGCCCAGCCTGTGAGTATCTGGCCAG----------------------------------------GCTTCTCCACTACCTTTCACGCCC-AACCAGGCCAGGCCTCCTGGGCCAGCCAGAGATCGGGTGTGAGCTGATGATGTTGGAGGAGGCTTCCTGAGGACAGCAGGACCAAGCTGGACC----AGACCTGGA-GAGCTTTCTTGGAGAAGATGCTGTACTGGAGGACAGAGAGAGG---ATGGAGCCAGAGCGGCAGTTAGGTGGAAGAGCCCC----------CCTCCCCCCCAGGAATC-------------------------------TTCCATGGA---CTTGCACATGACTGCCTGGCTTTGGTG-CTAAAGCCCAGCTTGGCT-CTGGCTTTGCCACCTGAACAGTTTATTTGGATCAGTTTTCGATCTAGAAC---ACTGTCAAACAAACCTTAGTAGAAAATTCTATTTAAAAA-ACACAAGCCCCGTGGGTGGCAAGACCCTGG--CCTCACACGTACTGATATTTCTATTTTTACACCCAAA----CATGCTTTCAGCCCCCAGAGCCCGATTTGGAACTTGAAAGCAGCCTGTTCTATTCTGGGACCCACTTCCGGCCTTGGTGGTATGATGGAGGC-GGTGTTTGTACAC-ACAGGCTGCTCTGCCCTCTGCCCTCCCCACCTCC-CCACCTCCCGTCTCTTC------------CTGCCCTCTTTCATCCACATAACCACCAGGACAAGAATGGAGTCTGCGAGGAGAAGACCAC---AGGTTCGGGCA-GGGAAGCTGTGGACTTCAACAGTAATGTGGTCCCC-CATTATCTC-TGAAGGTTCCACCAATCACCCAAGCCT-GTGTCAGGAGGGGTGGCCAGCCTTTCTCCAGTCAACACTGGACACTGAGACATG-GGGTGAAAAGTGGCCCATGTGACAATAAAAAAGTTCTCC s rn2.chr14 78702381 1629 + 107821284 TTCCCAATCAGGT-------------------GCCTCTGTTGGA---------GGAACACTGA-----CCCACCTTCTTGTTTCTATCCCCAAGAATGGCTTCATGGTT--------------------AGGCTGCTTCTCCTTGGCAGGCCCGTTTCTAGGTGGG-------CTGAAGGTGACTGGCCACTCATATGGGGGACATCAGGAGGCAGG---------GAACCCCACAGACCAAAGCAGTCAGGGTGAGTGGGAGAGGGGTGGT-------TAAAG---GGGAACCTTGTAGATGATT-AGCTCAGGCTGGACTCAAACTACAAAGAGGTGTGTGTCGG----------GG------------TGGAGGGAGAGTT---------------GGCCTCAGACATCTGGCAGATGTAATCATCTAGCAGGCTTCGAGAACAAGGCTGGGT-------CCTCTCCTGGGAGACTGGCTTAATGGCTTG------------------------------------CCTTCTTGGGTTCTAGGTCTTCCCT-TAG--AGGAGCAGACTCTGTGGCTCTCTCACACTGGACTTGCTCAAG--GGGAGGCAAAAAGTTTTCTCCTTTGCTGGTATTAGTCAGAATCTAGGCAGAGGG--------------------TAGGGAGTGGAGAGTGGCTGAAGGGACTTCAACATGCCAGGCTATCGATGGG-GTATGCACAGGGCCCTGATTCAGGTCCAGGCCATACTCCAAGCCGTGGTTCT-----TAC------------------TGTCGCAGTCCCACATGCACGTTGGGAGAGCCAGCAGAGCACCCCTG-CCCAGGAGACCTTTCCAGGCTCCTGT-GTCATG---------------------CACCACCCAGTT-GTCCCTTTCAGCTTTCGCCACAC------------------------CCTGCAGGGTAGGACTCTACA----------------------------------GTCCTGCTT-----------------GGCTGGCCCAGCCTCTGAACATCTGGCCAA----------------------------------------GCTTCTCTG-TACCTCTCATGCCC-AGCCAGGCCAGGCTTCCTGG-CCAGGCAGAGAGCAGGTGTGAGATGGGGA-GTTGGAGG---TTTTCCGAGGATGGCAGGACCAAGTTGGACC----AGACCTGGAAGAGCTTTCTTGGAGAAGATGCTACATTGGAGGACAGAGGGAGG---ATGGAGCAAGAGCTACAGCCAGGCAGAAGGGCCCCACCTCCGACACCTCCCTCCCCGCTGTCCTCACTCCCCACCCACCCCACCCCCCAGCCCTTCCACAGA---CATGCATGTGGCTACCTAACTTTGGTG-ATAAAGCCCAGCTTGGCA-CTGGCATTCCCAACAGAAAAGTTTATTTGGATCAGTTTTCGATATAGAAC---ACTATCAAAACAACCTTAGTAGAAACTTCTATTTAAAAACAGCCAAGCACAGTGGGTGGCAGACCCCTGG--CCTCACATATACCAATACTTCTATTTTTACACCCAAA----CATGCTTTCAACCCCCGGAGCCCGATTTGGAACCTGAAAGCAGCCTGTTCTATTCTGGGACTCACTTCCGGCCTTGGTGGTGTGGTGGAGGT-GGTGTTTGTACAC-ACAGGCTGCTCTGCCCTCTGCCCTCCCCATTTCCTCCGCCTCCTGTCCCTTC------------CTGCCCTCTTTCAGCTACATAACCTCCAGGACAATAATGGGGTCTG---GAAGGAGACCAC---AGGCTTGGGTA-GGGAAGCTATAGCCTTCAACGGC-ATGTGGTTCCC-CATGATCTCTTGTAAGGCCCACCAATCACCCAAGCCT-GTGTGAGGAGGGGAGGCCAGCCTTTCTCCAGTCAACACCGGACACTGAGATGTG-GGGTGAAAAGTG---CATGTGACAATAAAAAAGTCCGCC a score=48258.000000 s hg15.chr4_random 735684 858 + 1219494 ACGACCAG-AGCAGGAAGGAACAAGAGAACAGATGAGCCTGGGAGGCCTCCTGGGAGAGGGGACCCCAGGAGACACTTGAGGGCTGCTCCC--------ACCTCGACT--CCCCAGGCCTCTCCCATGGCCGTGGCAGGACTGGGCTGCCTTGGCAGGAGTGAATGAGGGACTCGCCCCACTGGGACCCAGAACTCCCCGTCCCACCTGGCCTCAAGTGGGTTCTGAAGGGGTCTCACCAGGCCTTCAGC--CGCCTGCCCAGCCGAGGACCCAGAGGACCACTCCCTCCCCCTTCCACTTCTCCATCCTTGGGAGTGGACCTTGGCCTTAATTCCACACTTGTGGGTCCCCTAAACCATGCTGG-CAGCCCTAAAGGCCCCTGCTACGGCCCTGAG-----AACACCCCTCCCCAAAGTGCCACCCTCTCCCCGATGACATGGGCTCTTATGTGCGAACCCCCAACACTGTGATGCCCTACAGTGCCACCTCT-------CCACTCAGGGGCACCCCTGATGTGCCCAGCCCAGGGTCAGGAGTGGCCAGCTGCCCTCAGTGAGCCTGTGGAGGGTGGGGTTCTATCGGCGGTGATACTGGGGCCCACCAAGTAGCTCAGAATGGCTCTGGCCCAGTAGCCCTGTCTCTGAGCCCCCAGCCTGCACTGCCCCTCCTCCCGGCCTCTGACAGGGGGTGAAGCTGGAAAGAT-------------GAGCTGCCCCACC------CAGCCCAGAGCTGGCGGGAACAGCAGAAGACTCAGGACCCCAAGGGTGGGGACTTTCCCATCACA---------------------CTGAAGAGGCGGCAGGGGAGTGGGGGGGTAGGTGCTGAC-----GCAGAGCTGAACAAGGTCTGGCCTGTGATGG-TGTGAGGCCCAGTCAGGGATGTGCA s mm3.chr5 116925583 711 - 149719773 CAAACCATAGGTGGGAAGAAAAAGGGAAATAGGTAAGCCCCG----------------------CCCAGGAG--ACTTGAGGACTGGC-----------CCCTAGACGGGCCCCAGGCCCT-------GCCATGGTAGA-----TCTGCC-TAGGAGAAGTGAGTGTGGGGCCC-ACCCACAAAGTTCCAGAGACACATGCCCCTCCAGGCCTGGCACTGGGTCCAGATGGGCACCACCCAATTTTCAGCATAGCCT--------------------GACCATTACCTCTCCCTTCTA---------TCT------TAGACCTTGGTCCTCATTCC-CACCCACGAGAACCCCAAACCATGCTGGCCAGACCCAA-------------GACTCCCAG---------------------ATGCTAC----------AAAACCTTGGGACTTAGTGCTGACCCCTCAACACCTTGAT-CCCTACTGTGCCCATTCCTTGAAAGCTACACTGGAGCCCTCC---TATGCCCCAGACAGGCCCCAGA---------------------------------------------------------------CACATAGGAGGCCAGACAGGCTTT-ACCCAGAAA----ATCCCTGTTGGTCTCACACACACACACCCAACCTCCCTCCACAGA-----GGTAGGACTGGAAAAGTAACAGCTGTGAC-AAGTAGCCAGACTCATGCTCTACCCAGAAATGTT----CCTGCAAAGGACCCCCTGCCCCA--GGCTGGGGCTTTCCTGTCACAAAAGAAAGCTTTCACACAAGCCTGGAAGGCCAGCAGGAGAGTGAGAAGG-----GCTCACTAAAGGTGAGGCTGAACCTGCCCTATCCTGTGGTAG-TAAGTACCCAGGTGAGAGGCAGGCA s rn2.chr14 78704128 722 + 107821284 AAAACTGT-GGCGGGAGGAGAAGGGGAAATAA-TAATCCTGG----------------------CCCAGGAG--ACTTGAGGACTGGCTTCTATCCTTGCCCTACACCTGCCCCAGGCCCT-------GTCAAGGTAGA----GTCTGCC-AAGTAGAAATGAATGTGGGGCTC-CCCCACAAAGTTCCAGAACCACCTGCCCCTCCAGACCTGGCACTGGGTCTAGATGGGCACCACCCAGTTTTCAGC-----CT--------------------GAC---TACTTCTCCCTTCTACTCTTCTGTTCT------TAGACCTGGGTCTCTATTCC-CACCCACGAGAACCTCAAACCATGCTGGCCAGACCCAA-------------GACTCCCAGTTGCTACCTAACCCACCCCAGATGCTAC----------ATAACCTTGGGGCACGGTGTTGACCCCTCAAAACCTTGAT-CCCTACTGTGCTCATTCCTTGAAGGCTACCCTGGAGCCCTCC---TATGCCACAGATGGGCCCCAAA---------------------------------------------------------------CACGGAGGAGGTCAGATAGGCTTT-GCCCAGAAA----GTCTCTGTTGGCCC--TGCACCTCCTCCTTACCTCCATCCTCAGA-----GGTAGGACTGGAAAAGTCACAACTGTGACAAAGTAGCCAGACT-GTGCTCTACCCAGACGTTTT----CCTGCCAAGGAACACCTGCCCCA--GGCTGTGGCTTTCCCATCACAAAG--------------------CGAAGACCAGCAGGGGAGCAAGAAGG-----GCTCAAGGAAGGAGAGGCTGAATCTGTCCTGTCCTGTGGTGGTTAAGTACCTAGGTGAGAGGCAGGCA a score=26229.000000 s hg15.chr4_random 745743 177 + 1219494 AGAGACCTTCCATGACTTAAC-CAGTGACATCATACAGGGAATTACTTGTACCCACATAGGTGGTCCCCAGGTCTTGAATACATGATGCCTGGAAGCACAATGTACCTTTTGTAGGCCTCATTTGGATAGGGCTTCTATATCTGAT------TCGGTTAGTAACTGGAAAGGACAGGGTGCTAT s mm3.chr9 79765809 184 - 124467299 AGAGACATTGTTGGGTGTGACACAGTGACATCATATAAGAAATTATCCATCCCTATATAAGTAGTCTCCAGGCCATGAGTTCTTGATGCCTGGAAGCACAAGATTCTTTTGGCAAGCATGAGTCAGACAGGGTTTGTATATTTGATATTAACTAGATTAATAGTAGAATATATCAGAGTGTTGT s rn2.chr8 81867916 182 - 127756414 AGAGACATTATTGGATGTAATACAGTGACATCATATAAATAATTACCCATACCTGTATAAGTAGTCTCCAGGCCATGAGTACTTGATGCCTGGGAGCACAAGATACCGTTGGCAAGCATGACTCAGACAGGCTTTGTATATTAGATATCAACTAGATTAATAGTAGAATATAAC--AGTATtat a score=14851.000000 s hg15.chr4_random 754293 84 + 1219494 ATCACCCAACACCGGAGTTGAGTGGTAACACCTTGGCTATCAGCAGACGCCTCAGATGGCACCTGA-ACCCTCACTGGCAGCTGA s mm3.chrX 66012213 85 - 149996094 ATCAGCTAACACCTTAGTTGTCAGCTAACACCTTAGTTATCAGCTAACACCTTAGATATCAGTTAACACCTTAGTTGACAGCTAA s rn2.chrX 115134357 85 - 133900917 ATCAGCTAACACCTTAGTTGTCAGCTAACACCTTAGTTATCAGCTAACACCTTAGATATCAGTTAACACCTTAGTTGACAGCTAA a score=74134.000000 s hg15.chr4_random 757454 634 + 1219494 TGCCATAAAGAATAAGGATCATTATACTTCAC-GTATGGATGGCAAAAGAGGGCC-AAAAATAGATATGGAGATAATCCAGATAATCATTAAGTATATTTAAGAATAGTGTCAACTTTGACCATTGTAATTGGTATAAA-------------AATATGACAGATTTCTGGATATTTATATCCAGATTATACAATATATACAGATTATATTTTATAGATACTAATGTTTGCCAACATTTCTAATATA-GAGTTTGAAATG---TTTCATCAAAA-CATTTAATACATGTAAAATATATACAAAGTTAAATACAGTAAAATCAAAATAATGTGGAAACTAGAATCTACTTGACAT-ATCTCCCTAGCAAGATAGTGTTTTTTTCCAACTGTACTATATTATATGAAAGTCCTGTTGCTATGCATATTCTGTACATGC----CATGGCTACGTCTACAAATATGAAACAGCTAGAATAAACGGAAAAATCTAAACACCAGAGATGTTTTTACGTGGTTGTATATGAAATTATCATGTTGACAAAACAGCCAGATAATAAAGTTTTCAAACTCAAGA---TTTTTGTCTTATATGTGTAACCTCT-GTTCTATTTGTTACAAATTATAAGTCTATGTTACTTAAGTGTGTGAATGAATAAAGGAAAC s mm3.chr1 55842896 598 + 195869683 TGCTATGCCCTATGAGCA--ATTCTACTACATTGTATAAATGACAGAAAAGGGCCCACAAAT-----------------AGATAATCTTTAAGGACATTTAAGGATAGTTTC-ACTTTGGCCACAGTAACC-ATATACAATAAGTGGTTATTAATGTGACAGTTTTATGGATTTTT---------TTATA------ACACAAATATTGTTCT----ATATCAATGTTTGTAAAAATGTGTAATGTAAGAGTTTGAAATGT--TTTTATTAAAACCACTTAATATAGGTAAAATACACACAAACACAAATGTAGTGAAACCAGAATAATGTGGAAACTACAATATGT---ACATCATC-CCCTTACAAGGTGGTGTTTGCTT-AAATTATAGCATACACAAAAAATGGTCTGCTGGTAAGTATTTTTTATATATGC----TATAGATTTGTCTA-AAATATGAACCTTCTGGAATAAAACTGAAAATGTAAACATCAAAGATGTTTGTAAGTGGT--TATGTGTGATGATCATGCTGGTTAGACAGCCAGATGCTGATCTGT--------AAGGG--CTGTTGCCTTACA-GAGACAATTCTTGTCTTGCTTGTTATGGCTTATAGCTCAGTAGTACTTAAATGTTGGAGTTAATAAAGGAAAC s rn2.chr9 54599828 597 + 118059026 TGCTATGCCCTATGAGCA--ACTCTACTTCAT-GTATAAATGACAGCAAAGGGCC-ACAAAT-----------------AGATAATCTTTCAGGACATTTAAGGATAGTTTC-ACTTTGGCCACAGTAACC-ATATACAGTAAGTGGTTAT-AATGTGACAGGTTTATGGATTTTT---------TTGTA------GCACAAATACTGCTTT----ACATCAATGTTTGTAAAAACTTGTAAGGTA-GAGTTTGAAATGTGTTTTTCTCAAAACCACTTAATATAGGTAAAATACACATGAACACAAATGTAGTGAAACCAGGATAATGTAGAAAGTAGAATATAC---ACATCATCTCCCTAACAAGATGGTGTCTGCTT-AAATTAGACCATAAGCAAAAAATGGTCTGCTAGTAAGTATTTTT-ATATATGCCAGCTACAGATTTGTCTA-AATTATGAACCTTTTGGAATAAACCTGAACATTTAAACATCAGAGCTGTTTGTAAGTG----TATGTGTGATGGCCATGCTGGGTAGCCAGCCAGATGATGATGTGT--------AAGAGAGTTGTTGTCTTA---GAGACAATTCT-GTCTTGTTTGTTATGGCTTATAGCTCTATAGTACTTAAGTGGTGGAGTTAATAAAGGAAAC a score=10494.000000 s hg15.chr4_random 758491 84 + 1219494 TGCCTGAGG-CCTGGT--CTGGGGCCGCGGGTCCACACCGCCTCCTCGTGGACACTCGCCGCGAGGGCCCGCGCCGCCCGCGGAGGC s mm3.chr5 116927587 87 - 149719773 TGCCTGAAGTTCTAGTCCCCAAGCCTTTGTGGCCACACTGCCCCCTTGTGGACACTTCCATGGCAGGACCCTCGTACCTGTGAAGGC s rn2.chr14 78709286 82 + 107821284 TGCCTGAAGTTCTGGTCCCCAAGCCTTTGTGGCCACACTGCCCCCTTGTGGACATTT-----GGAAGGCCCTCCTACCTGTGAAGGC a score=3759.000000 s hg15.chr4_random 762704 60 + 1219494 AACTCTCATGCCTGGCTCCTTCTCACCCTTTAGGTTGCAG-AGCTG--GACTGTTATCT--------TGTC s mm3.chr5 116928114 61 - 149719773 AACCCAAGTACCGAGCTCCTCTTCATTCTTTACATTGCAATAGATAGCGCCCCCTCCCCCC---------- s rn2.chr14 78709823 68 + 107821284 AACCCAAGTACCAGGCTCCTCCTCATTCTGTACATTGCAA-AGACA--GCCCCCTCCCCACACATACAAAC a score=2978.000000 s hg15.chr4_random 762764 33 + 1219494 TCTAATCACCCTCTTTAAAGTTAGGTT-CCTCCt s mm3.chr5 116928269 30 - 149719773 TCTAATCACC--CTTTAAGTTGGGATA--CTCCA s rn2.chr14 78709988 34 + 107821284 TCCAATCACCCTCTCTAAGGTGAAACATTCTCCA a score=5007.000000 s hg15.chr4_random 763104 40 + 1219494 TGTTGTTTTCT----TATACACA-TTTTCCCCTTCCTTTCCTTAC s mm3.chr5 116928299 45 - 149719773 CTCCCTTTCCTGGCCCCCACATATTTCCCCCCATCTTTTCCTTAT s rn2.chr14 78710022 44 + 107821284 TTCCTTTTCCTGGCCCCCACATA-TTCCCCCCATCCTTTTCTTAT a score=15189.000000 s hg15.chr4_random 763144 148 + 1219494 ACAAAATTTCCTTACGTTGCAATTATTCTTGTTTTGGAAAAGGATCTGTCTCCACTATTACAATGTCCACACATGAGTCCCCAGTGCCT-GGCCCAGTACCTAAATTTGCATTGAAGGCAAGAGCATGCTGGGCACTTCCCATGTGACC s mm3.chr5 116928670 128 - 149719773 ATAAAGTTTCCCTAC----------CTCTTGGACTGG----GCATCTGCCTCCACTGTTAGAATATTCATCTATGACTCTCTAGGACCCAGGCCCTGTA-------TTCAGCTGAAGGCACATGTATGCCAGGAACTTCCTGTGTTAAC s rn2.chr14 78710550 134 + 107821284 ACAAAGTTCCCCCAC----------CTCTTAGGCTGG----GCGTCTGTCTCCACTGTTAGAATACTCATCTGTAACTCTCT-GGGCCTAAGCCCTGTAGTTGAATTTCAGCTGAAGACACAAGGATGCTGGCCACTTCCTGTGTTACG a score=16175.000000 s hg15.chr4_random 763292 99 + 1219494 TTACTGAATATTTACAACACCCTCTAAGACAAGTGTTCTTGGaggtctggga-tccctcatccgcaattctgaaatct--aaaaagctcagaaacccaaaat s mm3.chr5 116928798 101 - 149719773 TTGCAGAATCTTAACCATGTCATAGATGGTCAGTGTCCTTAGaggtctggaa-tctctcatctacaattctaaagtccccaaaaagctcagaaacccaaagt s rn2.chr14 78710797 100 + 107821284 TTGCAGACTCTTAACCATGCCACAGAAGGT-AGTGTCCTTAGAGGTCTGGAAATCTCTCATCTACAGTTCTAAAGTCCC-AAAAAGCTCAGAAACCCAAAGC a score=16902.000000 s hg15.chr4_random 763705 211 + 1219494 gtttttcttaaaggtggtacaaaatctgacttcaacagctacaaggctttttctgatcttcattcatctcgcagtctgaatggtcaccctgtctttgcagaaattgtaa----------------------tctgtctggttttgtggtgctgtaccatgtcccagtgggagcactaagtcagattttagctgttcattttccattgctgcagaacaaactatcccaaatgtt s mm3.chr5 116928899 177 - 149719773 gtttttcttagagctggtacaaTGGCTGACTTGAA----------------TCTTGTCTTACTTAATTT----GACTGG-CATTCCCTCTGTATTTCCAGAA-----------------------------ACTGACTTGTTTTGTGGGGCTTAGAGATGCCCCAGTGGGAGTGCTACACTCTATGTCAATTGTT-CTGATACGATA-----AGAGAAAGGATTTCAAGTGTA s rn2.chr14 78710897 208 + 107821284 ATTTTTCTTAAAGCTGATACAATAGCTGACTCGAA----------------TCCTGTCTTACTTAATTT----GACTAGACATTCCCTCTGTAGTTCAGGAAGTAAAAAAAACAAAAAACCAAAAACCAAAACTGACATGTTTTGTGGGTCTTAGAGATGCCCCAGTGGGAGTGCTAAATTGTATGTCAATTGTTGATGTTCTGTTG-----AGACAAAGAATTTCAAGTGTG a score=6992.000000 s hg15.chr4_random 764365 78 + 1219494 aag---gaggggatcctctttgaaagctggctcccccagttatatgtacctatttgaaatccaaagatcctcatttctaaa s mm3.chr5 116930159 80 - 149719773 cTTCCAAGAGTAGACCTTTTTAGAGGATGGTTATCTCAATTATGTGCAACTACATAAAA-TCAAAGCTTTTGAACTCCAAA s rn2.chr14 78712328 73 + 107821284 ------AGAGTACTCCTTTTTAGAGGAAGGTTCTCTCAGTTATGTGCACCTCTGTAAA--TCAACGCTTTTGAACTTCAAA a score=15733.000000 s hg15.chr4_random 764783 253 + 1219494 cacacctgaccccaaggctgttgttggatgagagactgtggaTTGTCACATGCACCttttac----agttgaggcagaggctcaaggtaggtcactggaatgacgtgccccaggccacacat-----ta----------------gcctc-taacagctctgggtccagTT------TTGTTTTTTCCACTCAT----------------------------GCCCCAGACAATCAATAGGCATTGTTTGTAACCATAGCCATGGGGACTGTAGgcttgctgtgcagcagccactgcactggacaagcattcc----- s mm3.chr5 116930239 273 - 149719773 CACATGTGGCCCAGAAGC---ATTTGAATAAATGTCTTTG--TTGTTTGATTCATATTTTGC----ACTTCACAACCAGGCTCA----AAAGCACTTGAGTGGTCTAC--TAGGCTACACACAGGAATAGTAGTGAAGAGTTAAAGCCACATATCAGCTCTGGGCCAGGGTTCTTCTGTGTGATATCCACTCCCACACCCACTTCCCCTTCATCCCACAACTGCCTCAGTCAATCAAGATG-ACCCTGCATGACCATAGCAATGA----------------------------CTGTGCTGGACAATCATTTAATCA- s rn2.chr14 78712401 271 + 107821284 CACTTGTGACACAGGAGC---ATTTGAATAAGTTTCTTTG--TTGTttgatgtctattttgcggttagttcacaacgaggctca----aaagcacttgagtgacctaccctaggctacacacggcagta--agtgaacagttaaagccacatatccactcagggccagggt-cttcTGTGTGGTACCCCCCCCC-------CTTCTCTTTCATCCCACAACTGCCTTGGTCAGTCAAGATGCACCCTGCATGGCCACAGCAATGG----------------------------TTGTGCTGGACAATCGTCTAATAtg a score=51886.000000 s hg15.chr4_random 765036 562 + 1219494 -atgcacactccaccctctagtccccacaacagcccaaccaggtaggGTGGGCACTCGCTCTGCCCTTCCTTCTGCTGAGAGGAAGCCCAGGCTCTGATGA-GTAAGAAGGAGCCTTCCATAGCAAAGCCAGGCCTGTGTAGCCCAATGTCCGGGCCATAAGCACTTGGGTGGCTCTGGCTTTGCTTATAGGCTTGTCTGATTC-TACAAGCTTGTGTTTTCC--CAGGCTCAGCTCAGGCTTGGCTGTGGATCACATAAGGGAAGAAAGTCAAGAAGCTGCTCAGGGGCGGAGCCTGTGGGCAAGTGCACACACAGGGA--AGACCCCTGCCCTATCCTGAGTAGGGAACCTTGGAAAGACCCCATGTGTGCTTGGGCATCATTGTGGGGAAGACTGGGCTGTGGAAAAACACTAGCGTTTGTCTGGGAATTTTGGGGAAGGAAAGGGATGGAAAAGCGAAAGGGTGGGAAGGGGCTGGTTTCCTGCTG-CTTCTGCTATATAAGAACAGCATCTAGCAGGAAGGTTGTCCCG---------TGGGCCCATACTAGCCACCTTACAAAGCAGCGTCTg s mm3.chr5 116930792 507 - 149719773 -aTACGCAC-TCATTCTCTAGT-TCCACAACACCCCTACCAGGTAGGGAAGGAAGCAACTGTGACCCATCTTTT-CTGAGCAGAAGTTTTGGGCTGGAAGGGCTAAGAAGGAACTGAACATAAGTGAGCCAGGTCTGTGACTCCCAGTATCCATCCCATACATTCTTGGCGAGGTCTGGCTTTGCTTATA-----GTTTTATACTTGCAAGTGAGTGTGTTCCTGCAGGCTCAACCAGAGCTTGCCTGT-GAGCAGACAGGGTATTGAGAGTAGAAGACTGAGCAGAAAAGGAGAC-----ACACATCCTCACATAGGGAGGGGACCTCCATGAGATCTT-AGCAATGAGCCATTGAAAGATTC----------------TCACGGAGGAG-AGACTTCCCAGTGGAAAAAC---AGTGTTCATATGGAAACTGTGGGAA----------------------------GGAAAGGGTGGGCACCCTCTTGTCTTCTGCT-----AGAACAGCTTCTAGCGCTAAGGCCATCCTAACGCGAATTTAGGGGCATGCTGG---GGTTTGGTGGCTGGCTCTG s rn2.chr14 78713041 504 + 107821284 aataCACAC-CTATTCTCTAGT-GTGATAACACCCCTACCAGGTAGGGAAGGCAGCAGCTGCGATGCATCGCTT-CTGA-CTGGAGTTTTGGCTCTGAAGG-CTAAGAAGGAGCTGAACATAAGTGAGCCAGGTCCGTGACTCCTAGTATCCATCCTATAAATTCTTGGTGAGGTCTGGCTTTGCATATA-----GTTTGATACTTGCAAGGGAGTGTGTTCCTGCAGGTTCAACCAGAGCTTGGCTGT-GAGCAGACAGGATACTGAGA--AGGAGACTGAGCAGAGAAGAA--------ACACATCCTCACCTAGGGAGAGGACTTCCATGAGATCTT-AGCAAGGAGCCTTTGAAAGATCT----------------TCACGGAGGAG-AGACTTCCCAGAGGAAAAAT---AGGGTTTGTATGGAAGCTGTGGGAA----------------------------GGGAAGGGCCAGCGCCCTCCTGTCTTCTGCT--TGAAGAACAGTTTCTAGCGCTAAGGCCATCCTAACTCGAATTTAGGGGCATGCTGG---CGTTTGGTGGCTGGCTCTG a score=148250.000000 s hg15.chr4_random 765903 1577 + 1219494 GAAAGCGGCGTGCGGGGCAGGGGGTTGGAGCTCTTTCTGGGCTCAGTGTCCCCAGGTGACGGAACACATGCCACGTGCTTGGTGCGCTGCGAGCTCAGCTCCTGGAGCTTCTGTTGCTGCTGTGGCCGCAAGGCCTGGACCCTCGCGGGGAGATTCAGACCCACACTTAGC-TCCAGAGCTTGGGGGTTGTCG--TTAAGCCCTTCCTTTC--------CATCAGAGGCTGATGAATCCCCAAACTCCTG-----GGCTGAGTTCGACTCTCCGACAACTCCTCAGAGGCGGATGTTTGGGGCCACTGGAATAAGCC-----------------CAGCACC--------AGCTGGGGTGTGGACAG----------CCTCGGGGGCCAGGCCAACTCTCCCGGACGGGTGCGGACGGCAggggcggggccgggctgtaggcggtgggaggggtggggccgggcgagaaggggctgggcgggc-tgccgtcgggcggggctgcgcggggaagggcggggctgcgcggggggcggggctgcgtgggggagggcggggccgggcTGTTGTGGGTGGGCGGGGCGCACCGGGGAAAGTTCCGGGAAgggcggcagccggcggggcccgggcgcggAAGTTgccggcggccgcgcggcctcccgggcgggccTACAGCCAT---GTCCCGGGACCCGGGGTCGGGCGGCTGGGAGGAGGCCCCGCGCGCAGCTGCCGCGCTCTGCACCCTGTACCACGAGGCCGGACAGCGGCTGCGCCGCCTGCAGGACCAGCTCGCTGCCCGCGACGCCCTCATCGCTCGCCTCCGCGCCCGCCTGGCCGCGCTGGAGGGGGACGCCGCGCCGTCCCTAGTGGACGCGCTGCTGGAGCAGGTTGCGCGCTTCCGGGAGCAGCTGCGAAGGCAGGAGGGCGGCGCCGCCGAGGCCCAGATGCGCCAGGTACGAGGGCGGGTACCAGAGGAGCTGCGGGAGCGAGAGTGCGTGTGGCGGCCGCCGGGTCCTGGGTGGGTGAGCG-----------AGCGGGCCCCGGGTCCTGAGGGGTTGAGGGGGTACTGGGTCCTGGGGTTGAGTT----GGCCTCGGGTCCT-GAG------GGGTT-GGGGGAGCACCAGGTCCTGGGAGTTGAGGGGGTGCCGGGTCCTGGGGGTGAGGGGGCCCCGGCTCCTGAGGGGTTGGGGGAGCATCAGGTCCTGGGGGTTGAGG-------GGGTGCCGGGTCCTGGGGTTGAGGGAC---------ACTAGGTCCTGGGGGTAAGGGGCCGTCGGGTCCTGGGGGTGATAGGGCAAC---AGCTTC-----------TGGGGGGTG--------------AGGGGACCCTGGGTCCTAGGGGAGAGAGGGGGACCAGGTCCTGAGTGGGATAAGGGGACACCACGGGCTGAGGTGTGCTGGGTCCTG----------GGGGGTTTGAGGCGTCACCAGGTGC---TGGTGGAGGTGAG-----------------GGGGCTCTGGGTCCTGCGGGGTGAGGGTGCAAG---------------GTTCTGAAGGGGATAAGCGAATGCTGGATCCTGGGGGGTTGGGAGGGCACTGGGTCCTGGGGGATGGTGAGGAGGCACTGGGTTCTGAGG------AGGGGGGTTGGTGCAGTTCTTGGGTTCTGTGTGTGTGTGGTGTATGTTCAGGTGGGCTCTTAGGGGTATT------TTG-------AGGTTCGTGT s mm3.chr5 116931299 1554 - 149719773 GGCTCCATCATGT---ACTCTGGATGGGAACACCTTTCTGGGTCAGTGTCCCTCTATGAAGAAACGCATGTCAAGTCCCGGAAGAGGAAGGAGCCCAGCCAATGAAACCT------------------------------------------------GACCACACTCTACGTCCCATGTTTGAAGTCCTTTGATTTATTTGCTTTTCTTCAGCTGCTGTACCAGAGGATACCTAA-CCCCAAACCCTGGTCGCAGATGGGGTCTGACTCCAGGAAAATTCCTCAGACGCAGG-GAATAGAGC----------------------------AGACAGCACCTAGAATGGAGCTGGTGTGTCAAGAGAAAGTGAGATCATAGAGTAGGAGG--GAC---------CAGCTGTG---GGAGGGGACGGAGTCAGACTCCCGGCAGTGGGAGAGGCGGAGCCAGCTG---------TAGGCGGGG-CGGAGTCAGAC------------------TCCGGGCCATGGACGAGGCGGAGCCAGCTGTGGGCGGGGGCGGATTAGGCTCTGGGAGTGGGCGGGG-----CGGGAAACGTTCCGGGAAGGCTGGTTTTC-GCTCCCCCTGTGTGGAGAAGTTGGAGACGCCCA---AGTCCCCACGGAAGGCCTACAGCCATGTCGTCTGGGGACCCAAGGTCTGGTAGACAGGACGGGGCCCCGCGTGCGGCCGCAGCGCTCTGTGGCCTGTACCACGAGGCCGGCCAGCAACTACAGCGCCTGAAGGATCAGCTGGCCGCGCGTGACGCCCTCATCGCGAGCCTCCGCACCCGCCTCGCGGCTCTGGAAGGGCACACGGCGCCGTCACTCGTGGACGCACTTCTGGATCAGGTGGAGCGCTTCCGTGAGCAGCTGCGACGACAGGAGGAAGGCGCTTCGGAGACCCAGCTGCGGCAGGTGCG-GGGCGGGC-----GGGAGCTGC-----------TGCGCAAGGCGGCCTGGGGAACTTGTTGGAGCGAGTGACGTGGAGTCCAGAGATGCGCGAGGTCTTGAGGGTCGCGAGGATATGAAGCTCGAGGTGCGGGTCTGAAGAGCTCGAGGTCT-GAGCATAGTGGTTT-AGGGGTGCG-------CTGGGGTTTGAAAGGA-GCTGGGTTATGAGGGATACGAGATCCTGAGACTAG-----------------TGGGTCCTGAGGTTTCAGGGTCTGAAGGGCGTGGGGATCAGAGGCGCAGGTAATCCTGTTGGATTAGGGTCTGAAGGTAAGAGTCTGGGTAGTTCAGGG---TATTGAGCAGTTCGGGATTCATTCGTAGGCTCAGGGGATATGCCAGAGGTGAGCAGGAGTCTCTGGGGCTCGGGGTTCTGGTGAGCAACAGG------GTGGTA----GGGGTGTGACTGTTTGAGGAGTACCAAGTCCTGACGTCCTGCTGAGGTTATGAGCACTTCTGAGGGACTTGTAATAGAGGTTAATTTGGGACAGACCCCCTGGGTCTCTCGACTTTGAGGGGTACTGCTGTGGGAAACTTACTCATGAAGTTTTGTGGGGGACAGGGTTCTGCGGAATGTGAGGGATCCTGGAGTGCA-----------GGGATCTTGTGG-GGCATAATGTTCTGAGGTAGCCTCGAACACGTGGTTCTGTT----GGTAGTAAGCTTCTCCAATATGTACTCATAT----TATTAGTAATATTATTATATTAGTCCCAAAGGGGTGTGT s rn2.chr14 78713545 1562 + 107821284 GGGTCCACCATGT---ACTGTGA-----------------GCTCAGTGTCCCTGTATGAAGAAACACAAGTCAAGTCCCTGAAGAGGAAGGAGCCCCGCCAATGAAACCT------------------------------------------------GACCACACTTCATGTCCAATGTCTGAAGTCCTTGGATTTATTTGCTTTTCTTCAGCTGCTGTACCAGAGGATACCTAA-CCCCAAACCCTGGTCACAGATGGGATCTGACTCCAGGAAAATACCTCAGACGCAGG-GAATAGGGCCGTGGTGACAAGTCTAAGACTGTGGGGCAGACAGCACCTAGAAGGGAGCTGGCACGTCAAGAGAAAGTGAGATCATCGAGAGAGAGG--GGCGGT----GACAGCTGTG---GGCGGGGGCGGAGTCAGACTCCCAGCGGAGGGCGAGGCGGAGCCAGCTG---------TGTGCGGGGGCGGAGTCAGAC------------------TCTGGGCAGAGGGCGAGGCGGAGCCAGCTGTAGGTGGAAGCGGATTAGGCTCAGGGAGTGGGCGGGG-----CGGGAAAAGTTCCGGGAAGGCTGGTTATC-GCTCCCGCAGCCTAGAGAAGTTGGAGACGCCCA---AGTCCCCACGGAAGGCCCACAGCTATGTCGTCTGGGGACGCAAGGTCTGGTAGACAGGACGAGGCCCCGAGCGCGGCCTCAGCGCTCTGTGGCCTGTACCACGAGGCAGGCCAGCAACTACAGCTCCTGAAGGATCAGCTGGCTGCGCGTGACGCCCTTATCGCGAGCCTCCGCACCCGCCTCGCGGCTCTGGAAGGGCACACGGCACCATCACTTGTGGACGCACTTCTGGATCAGGTGGAGCGCTTCCGTGAGCAGCTGCGGCGACAGGAGGATGGTGCCTCGGAGTCCCAACTGCGGCAGGTGCG-GGGAGGGC-----AAGAGCTGT-----------TGCCCAAGGTGGCCTAGGGAGCTTGTTGGAGAGTGTGACACTGAGTCCAGAGGTGCGCGAGGTCTTGAGGGTCCCGAGGGTATGAGGCTCGAGGTGCGGGTCTGAAGAGCTCGAGGTCTGGAGCATGGTGGTTTAAGGGGTGCG-------CTGGGGTTTGAAAGGA-GCTGAGTTATAAGGGACACGAGATCCTGAGGCAAGTGGGTCCTAAGGAGCTCTGGGTCCTGAGGTTTCAGGGTCTGAAGGGCGTGGGGATCTGAGGCGCAGGGAATCCTGAGGGATTGGGGTCTGAAGGCGAGAGTCTGGGTAGTTCAGGA---TACTGAGCACTTCGAGATTCATTCGTAGGC-CGGAGAGTTAGGCAGAGTTGAGCAGGAGTCTCTGGGGCACAGGGTTCTGGTGAGCACCAGG------GTGGCA----GAAGTGTGAC-GTTTGAGGAGTACCAAGTCCTGACATTCTGTTGAGGTTATGAGCAGTTCTGAGGAACATGTGATGGAGGTTAATTTGGGACAGACCCCCTGGGTCTCTCGACTTTG-GGGGTGCTGCTGTGGGAAACTTGCTCATGAAATTCCATGGGGG-CAGAGGTCTGAGGAATGTGAGGGATCCGAGAGTGCA-----------GGGATC-TGTGG-GGCATAATGTTCTGAGGTAGCCTTGAACACATGGTTCTGTT----GGTAGTGAGCTTCTCCAATATGTGCTC---------------------------TGGGTCCCAAAGGGGTGTGT a score=22486.000000 s hg15.chr4_random 768399 273 + 1219494 CGCAAATCCTGACTTTCTTCTCTTTGTCCTTGTCTATGATGTTTATGTCTGTTTTTTGATGATAAACTATAACACCACAACAGCAGTATAAGTAACAGTTTTTTTGTGCAATAGTATTTGCAAGCATCTGA-----------AACATTCGGGTGAGCTCTGGCATCTATTATTCCATTTGATTCATGGCTATTATCCTAGTTTGCCCA---GGAAAGAAACTAAGCCTGCAAAGGCAGTAGTCTGCGAAAGATAGTTTTTGTCTCCAGGGTTGGCCCCACAGCCTGA s mm3.chr5 116933623 265 - 149719773 TGTGAATTCTTATTTGGCTCTCCTTGTCATT--------TGGTATCATTTGGTTCCTG-TGAGATATCATAAGCACACAAAACTGAAATGAGTAATAATACTTTACTGGAGCAATTATTTCTAA-ACCTGACAACCTTGTCCGGCATTTGGAGGGATGCTGGCA--TTTTATTCCATTTGGTCCATAGC---TGTCTTGATTTTCCCA---GGAAAG----AAAATAAGAGAGGAGATTACCTGATAAAAGATAATGCTTGTTTTCAAGATAACCACTGCAGCTAGA s rn2.chr14 78715956 254 + 107821284 TGTAAATTCTTACTTGGTTCTCCTTGTCATT--------TGTTATTACTTGGTTC------------CACAAGCACACAAAACTGAAATGCGTGATAACACTTTCCTGTAGCAGTCGCCTCT---ATCTGACTACCTTGCCCCACATTTGGAGGAATGCTGGCA--TGTTATTCCATTTGGTCCATGGC---TATCTTGGTTTTCCCCCATGGACAG----TAAGCCTGACAGGGGAGCAGCTGGTAAAAGATAATA-TTGTTTCCAAGATTACCACTGCAACTAGA a score=51149.000000 s hg15.chr4_random 768699 614 + 1219494 TTTTAAAAAAGAAaaaaaattataaaacaa-tttt--------------------gaatatctgaaaaataaagaataaaatagccgctgtagtcccacagtgcagggatgactagtgttaatctcttggcatgccttcttcctgtttttcctctgtgtataaggtgtgtgtacacttggcatggttgttttcatgctgtg-tatacagttgtacttaatattaggttgtcag-------tatctacatcatttaaaatacttTCAGCAG-CCAGTGTCTCCCCTACTCCACTCTCTCCCTCTTTCTGGAAGGTACATCCTGACTCACTAGAGCAGAAGGGAAGTTTAGAGGTCACCTGGTCTGCACCAACAGGTTTTAGAGTTGTGGATGCCAGGAGCCACAGATGAGTACAGACCAAGGACCCGGAAGGACACTCCGAAGTCATCTCCAGAATGTTGGT-GGGA-----CAGGATGCAGGGA--CCTCACAACCAGAGCAG---TATACTTGCAGTC-GGTGGCCATTGGTGTTCCGCTCACATGTGTTCCCTGGTGTCCTGTGTATCTGGCCACTCACCAAGCAGCTTATTGCAGCTTCCTGGTAGCCTCAGATAGAATTAGTTCTGTGTTCCCAGTATTA---------------CTGGC--------CCTGGTC s mm3.chr5 116934549 568 - 149719773 TTCTAGAGGGGGAAAAAAG----AAAGCAT-TTTTTTTTCTGATGGTAAACTTCAGAATATCTGAAAAATAAAGGAAGGAATAAA----ATAATCTCACA----------------TG-----CTTTTTACATGCCTCT-ACCTGCGTTTCCTTTGCAAAGACA-----CAGATCCTTGGCATTGCTGGGTTCACACTTCT------------------------GTTGTCATGGTTTTCTATCTGTATCATTTAAAGTACCAAGAGCAA-TAGGAGTCTCCCC-ACTCCAAG-TCTCCCTCTTTCTGGAAGGAGGGTTGTAAAATATCAGAACAGAAGGGAAA-GCAGAGGCCGCCTGGTCTGTGCCACTAA--TTTAGTGTTGT-AACATCAGGTGCCATAG-TGAGTACAGAGTGTGGTTCTGAAGGCAC-CTCACAATTTGTCACCAGACTATCAGTGGGGGGTAGTTATGGTAAAGGAGATCCCCATAACCAGAACAGAACTTCATCTGCAGTCTGCTAGCCATTGGTGTTCAGTGCAGATGTATC-------------TGTACCCGGCAACT-----GGGACTTATTTATAGCTCTCTAGAGGCTCCAGACAGAAGCAG-TCTATGGCCC-----------------------CTGGCATACAGATTTTGTTC s rn2.chr14 78716461 597 + 107821284 TTCTAGAGGGGGGAAAAAA----AGAACGTATTTTTTTCCTGATGGTAAACTTTAGAATACGTGAAAAACGAA--------------------TCCCACA----------------TG-----CTTTGTGTGTGGTTCTTACCTGCGTTTCCTTTGCGGAGATA-------GATACGTGGTCCTGTTGGGTTCACGTTTTTCTGTACAATTTTACTTTATATCGTGTTGTCATTGTTTTCTATCTGTATCATTTAAAGCACCAAGAGCAAACGGAAGTCTCCCC-ACTCCAAG-TCTC--TCTTTCTGGAAGGAGGGTTGCAAAACATCAGAGCAGAGAGAAAA-GTAGAGGCTACTTGGTCTGGGCCACTAA--CTTAGTGTTGT-GACATCAGGAGCCACAG-TGAGTACAGAGCGTCAACCTGAAGGCAC-TTCAGAATTTGTCACCAGAATATCAGT-GGGAACAGTTAGGGTAAGGGAACTCTCCATACTCACAACAGAACTACACGTGCAGTCTGGTAGCCACTGGTGCTCAGTGCAGATGGATC-------------TACACCCAGCAACT-----GGCACTTGTTTATAGCTCTCTAGAGGCTCCAGACAGAACCAG-TCGATGGTCCCAGTATTAACGGTTCTACGTCCACTGGCATACAGATTTTGTTC a score=1919.000000 s hg15.chr4_random 769665 50 + 1219494 ATTTTTAATTATTTAAGGAACATTTTAATGATTTAGTTTTGTTTGTTTGt s mm3.chr5 116938669 49 - 149719773 ATTTTTAATTCTTCA-GGAGCATTTTAATGATTTAGTAGCTCATGAAAGT a score=2073.000000 s hg15.chr4_random 770047 158 + 1219494 TGGCCTTATCTGGTATTTTATGCAATTACATATTTATTGCTCATCCCAACGTTCAATCTGAGGTCGGTCATGGAACCTGTGGAAGAATGGAGAGGTTTCTCACCTC---------CTGCAGG-CCCTGGGTTCACTGAGGTGGCAGTGCAGAGTTAAAGACACAGCAG s mm3.chr5 116938718 155 - 149719773 TAGTGTC---------TTTTTGC--TTACGCATTGGTCAGTTTTGTGAGGGGTGTAATGTATTTCAGTCACTGA--TTGGAGAAGAACAGAAAGGTTTATCACCTCAGCCACTGCCCACAGGACCCTTTGTTTACTGAAATAACAAGGCAGGTTTAAAACAACAGCAG a score=35237.000000 s hg15.chr4_random 770205 288 + 1219494 GAAGCAAGCCGTT-GCTAGGTTGCTCTCATCTATG---AGAGCC-----CGTTAGGAGCAGGAACCCTGGACCAGTAGGGACTGAGGGCTCCCAGAGAGAGTGCTG-AGGCTCAGAATGTGGAGGAGCTGACCAGTGCGTCTGTGATCAAGCTGCGGTCAGTGTGTGATGGGGCAAGATCAGGCCAGAGAATTGTGGTCCTCAGTGCAGCC-ACA----GCTGGACTTGAGACCTTACCTCATCTGTAACACAAGGCCTGAGTGGATAACTTTACAAAGCCCCTCCAGTTAATACTTTCTGGA s mm3.chr5 116938972 281 - 149719773 AAATCAAATGGTTGGTTAGCTTGCTTTCATTGATGGCCATAGCTGCCATCTCTAGAAACAGGGACCCTAGACCAGAAAAGACTGGTGGTTCTCACAG----------AGACTGGGTATGTGGAGTAATTGAGAAGTT-ATTTTTGA-CATACAGTAGCCAGTACAT-------CAGAATGAGGCCATAAACTT---GTCTTCCTGGTATCCTGGAGTGGGTGGGAGTTGAGACTCTACCTCATCTGCAACTTGAGGCCTGGATGGATGATTTTGCAAACTTCTTCCAGATAAGGTTTTCTGGG s rn2.chr14 78719608 288 + 107821284 AAAGCAAATGGTTGGTTAGCTTGCTTTCTCTGATGGCCATATCCACCATCTCTAGAAACAGGGACCCTAGACCAGAAGAGACTGATGGCTCCCACAGAGAATACTGCAGACTAGGTATGTGGAGGAATTGAGAGGTTCATCTTTGA-CAGACACTAGCCAGTATGT-------CCAGATGAGGCCATAAATGT---GTCCTCATGGTGTCCTGGA----GTGGCACTTGGGACCCTACCTCACGTGCAACTTGAGGCCTGGATGAATGATTTTGCAAACTTCTTCCAGATAAGATTTTCTggg a score=16258.000000 s hg15.chr4_random 770493 122 + 1219494 ATAATGGCACCAATTCATTGTGCAACCTGGTCCTGCCCAACCCCATCCTGTCACCATTCTCGGGACCAGCTTCATAGGCTTTGCCTGGTCCTGGCGTATCAGCCCCCTTTCCCTTCCGGCTT s mm3.chr5 116939253 116 - 149719773 TTAATGGTGCC-ATTCACCATGTTGCCTGTGGCTATTCAACTGCATCCTGTTATC---CTGGAGACTGGCCTCATAGGTCCTGCCTAATTCTGGC--ATCTGCAGTCCTTTCCTTCCAATTT s rn2.chr14 78720008 116 + 107821284 TTAATGGTGCT-ATTCACCATGTGGCCTGTGGCTATACAACTGTATCCCGTTACC---CTGGAGACCGGCCTCCTAGGTCCTGCCTAGTCCTGGC--ATCCGCAGTCCTTTGCTTGCAATTT a score=21484.000000 s hg15.chr4_random 772565 131 + 1219494 TCCGTGACTTTTCTGAAACTGTTTCTTCACTTGTGGGATGGACTAGTTGAGCCTGCTTCACCTCCTTCATGTAATGTACTGTTTATTTTGGAGGATTCTTTGAAAACGGAAAAGTACAAATTTAAGGCCAG s mm3.chr5 116939923 125 - 149719773 TCCCTGGCTTTTGTGAATCTGTTTCTTCATTTGCAGAGTGGATTGGTTGAGGCTCTTTCATCTC------ATCATATACTGTTTATGCTTGAGGATTCTTTGAAAATAGGAAAGCGCAAATTTAAGACCAG s rn2.chr14 78720729 113 + 107821284 ------------GTGAGTCTGTGTCTTCATTTGCAGAGTGGATTGGTTGAGGCTATCTCATCTC------ATCATGTTCTGTTTATGCTTGAGGAGTCTTTGAAAATAGGAAAGCACAAATTTAAGGCCAG a score=2638.000000 s hg15.chr4_random 773016 487 + 1219494 TAAA-----TTCTTTAAGAAGTAATTGGGGTT---GGGtgtgttaatttcctagagctgctgtaacaaagtaacacaaactggggggcttcaagcaacagaaatttaatctttcacagttctagaggccagaagccagaaaccaaggcatcggctctctctcaaggttctagggaaggacccttcctcgcctcttc-agcttcctgtgggggccaccaatccttggtgttccttggcctttatccacaagacaagacgtcactcctatctttgttgtcacgtggtcgtcttctctctgtgtgtctgtccagacttctgtctgcttacaaggacaccagtcccgtcctaatccattttgtccccaccttaactaattacatctgcaaagaccctatctctaagtaaggtttcattcccagataccggggaatgggaggtttggttgtggaca--tctttttggggttacccaccacaGTGGAGTTTCTACCTATCCCAT s mm3.chr5 116940842 305 - 149719773 cATGCAGTTTTTTTTAAATAGTAATTAGGATTTCAGGCtatattagtcttcta----------aacaaagtaccacaca-tggggaacttgaagcaacaaagatttaattgttcatcatcctagaggttagaagcaccagatcaaggtgtcagctgtccctt-----------------------ttcacctcttccagcttttggtagtggcttcaggtccttagtgttc--------------------------------------tcagtcttcacatagctttctcttctaagcacatctctctaaaattc---cttcttggatggccatcagt------------------------------------------------------------------------------------------------ggttagattggggGTAGttcttttt----------------------tttttttttttttttt a score=9913.000000 s hg15.chr4_random 774667 137 + 1219494 AGGCTGAAAAACTCCAGAGTTAATAGTTCAAATGCCCAACTTCTGAGTGAGTAATTGTTAGTTCAAACGCCCAACTTCTGAGTGAGTATGTTTGTGTCTGGTGATGGGGCATCCACGCCAGGTCTTCTTTTGC--------------TTTC s mm3.chr5 116941334 116 - 149719773 AAGATGAAAAACTCCAACGTTAAC-----------------------------TCTATTATCTCTAAAGCCTGCCTTCAGAGTGTGTAT-----TATATAATGATATGTTATCCTTGCCAGAATTTCTTATGCTTGTA-TCACATTTTTTC s rn2.chr14 78722470 114 + 107821284 AAGATGAAAAACTCC---GTTAAC-----------------------------TATATTACCTCTAAAGTCTGCCGTCAAAGTGAGTAT-----TACCTAATGATCTGTTATCCTTGCCAGAGTTTCTTATGTTTTTAATCACATTTTTTt a score=6402.000000 s hg15.chr4_random 774804 45 + 1219494 TGAACATTTGCTCTTGACACTGCTTC--------------T--TTTAATTCAGTAAACTGT s mm3.chr5 116941579 61 - 149719773 tGAACTTTTGCTTTTGACATTGCTTCAGCCCTTCAATCTGTGCTTTAATTTTCATAACTAT s rn2.chr14 78722705 58 + 107821284 tGAACCTTTGCTTTTGACACTGCTTCAGTTAT-CAATCTGT--TTTAATCTTCACAACTGT a score=142950.000000 s hg15.chr4_random 774849 1196 + 1219494 GCTTTT-----AAATCTTCCACTT------AGGAAATTGAGAGGCTGACTGAGCGACTAGAAGAAAAAGAGAGGGAGATGCAGCAGCTGCTGAGCCAGCCCCAACACGAGCGAGAGAAGGAAGTCGTCCTGCTACGGAGGAGCATGGCAGAAGGGGAGCGCGCCCGGGCCGCCAGTGACGTCCTGTGCCGCTCCTTGGCCAACGAGACCCATCAGCTGCGGAGGACGCTGACCGCCACCGCCCACATGTGTCAGCATCTGGCCAAGTGTCTGGATGAACGACAGCATGCACAAAGGAATGTGGGGGAGAGAAGTCCTGACCAGGTAGGCCACAGTGTAAGCAGAGTGTGGGGAAGACCTCTGTGTGCTGGGAGCATCGCCTAC------AGGCCCCTGA----TCACAGAGGTGGGGGGGC----------GCCCCAGAACCCACTTCTGTTCTCAGTAACGAGAGTCAGCTGACGGGGCAAAGCTCACTCATCCAAGGGTTTCTTTTAAAATGATGGAACATGCAAAATGTAATAGGAAAGCAGGCAGCCACCTCACTGCCCAGCACCAGGCCTGTGGCCGACCCCGC-TCCCAGGTGGGAGATGGCACTTGGCTTTCATCTGCCTCAGCTGAGGATGAGGAGGAGGAGCTGAGCCTGGCAGAGCTGCCTGGAGGAAGTGTAGTCACATCCTCCATCCGAGGAA-----ACTGAAGCAGAGCCAGGTGGTACTGCTGGGGATGGGGAGTGCCTCCA-GTTCCACACCC-CAAACTCCTGGAAGGACCGTG-------------AGTGCCCGCCTTCTTCAGGCTCAGTGTGTCTGAGTGCATGCAGGCACAGCTGGAACCGCCATCTCCAAAGCTGGCTTTAGGCATGTCCTTGCCAGCAGCACGGCCTCCCGCAAGCTTGGAGACCTGGCTCAGGGCCAC------AGCCTCCTCATCA------------------------------TCAAAGC-------------------------------------------------AAGGGCCGGGGG-CAGC-GGCACCAAGTGACAGTGAGGGCCAAAGAAGGGTTCGCTGGACCTCCAGGATAGGCTGGATCTGGGCTGTAGCTCTCTGTGGGGTCTAGTGGGAGAGAGAAGGACCGTGGGAGTTTCAGCATCAGG-----------------------------------AGAAACCAGGGGGCTCCTAGGCA-GAAAAGTAGGGGAGCAGTGGCCCAAGGCATC--TGTGTGCCAGGCACCTTCCA------------TCTTGCTGGTGCTT-GTGGTGGTCTGTGTGTGGCAGGCAGGGGAATGGAGGCACTCCGTGCACATCTCACCT s mm3.chr5 116941765 1242 - 149719773 ACTTTG-----AAA--TTCTTTTTTTTTATAGGAAGTTGAAAGACTTACGGAGCGTCTAGAGGAAAAAGAGAGGGAGATGCAACAGCTGATGAGCCAGCCTCAGCATGAGCAAGAGAAGGAGGTAGTCTTGCTTCGGCGAAGTGTGGCAGAGAAGGAGAAAGCCAGGGCCGCCAGTGATGTTCTGTGCCGCTCCTTGGCTGATGAGACCCACCAACTGCGCAGGACATTGGCAGCCACTGCCCACATGTGCCAACATCTGGCCAAATGTCTGGATGAACGACAGTGTGCACAGGGAGACGCTGGGGAGAAAAGCCCTGCTGAGGTAGGCC---GTGTAACTTGA-TCAAGTGAAGACTCTGCTGTGACAAGAGTCATTGTTGT----------TCCTGAGTAGTTGCTGAGGTCTGCGGGT----------CCCACAGAACCTAC-TCTTTGCTCAGGGAGGAGAAT--------------AAGTTTGCTTAGCAGGAGAGATC--------TGGTGGAACATGTGACCTGT-----------AGCCTGCCTCCCCCACTCCTAGTATT--GCCTGTAGCTGATCCTGCATGATGGGCAGGAGAAGGCACTTGGGTTTTCTCTGCC----CTGAGGAGAGGAAGGAAGAGCTTGGAATAG-GGGGATGCCCCCAGGAGGTGTTGTC------------------------ACTGAGGCAGATGTAGGTGACACTGCAGAGGAGGTCAGATGCCTCCACATGCCACATATGCAGACTCCAGATCTAACCCTGCTAGAG------------------------------ATACATCTGGGTG---GTAAGAGCTGATCTGGCCACAAGTCTCATGAAGAGC--CAGAACTTCTGCTGCCAGCAACATGGCCTGCCGTAAGCTAGA----CTGCCATAGAGCCACCCTCGAGGCTTCTTCATTATCACCCGATA--ACAGAACATCTTCACGCCTCAAAACTATGAACCCTATGTAGTCACTGTGGGAGGTGGACAGCAGATGGCGACAGAAGGGCCAGAGGCCATCTGGGGACAGGTTGCCGTAGGGACCCAGGAGGAGCCCTCTGTGGCTCCAGGCCAGGATAG-TTTGGGTGGTGGATCTGTGTGAGTT----TGGTGAAGAGGAGTATGAGTAAGGCTTCAGCATTGAGCATCCATAAGGTAGTTATGGTGAGAGATGCATCTCACAAACCAGAGGGCTCCTGGTCAGGAAGAGCACATGACTGGTGGGATCAGGACTCAGGATAGGCCAGGCACTGGGCATGGTACCTTATTTCCTGCAGAAAGGTGGTGCTGATCTGTGTGGAGCTGACAGGGAAAC--AGGCACATATGGCACATCTCGCCT s rn2.chr14 78722888 1293 + 107821284 ACTGTGCTTTTACA--TTCTTTTT------AGGAAGTTGAAAGACTTACTGAGTGTCTAGAAGAAAAAGAGAGGGAGATGCAGCAGCTGATGAGCCAGCCTCAGCATGAGCAAGAGAAGGAGGTGGTCTTGCTTCGGAGAAGTGTGGTAGAGAAGGAAAAAGCCAGGGCGGCCAGTGACATTCTGTGCCGCTCCTTGACTGATGAGACCCACCAACTGCGCAGGACATTGGCTGCCACTGCCCACATGTGCCAACATCTGGCCAAATGTCTGGATGAGCGACAACGTGTGCAGGGAGACGCTGGGGAGAAAAGCCCTGCTGAGGTAGGCC---ATATAACTAGA-TCAAGTGAAGACTCTTGTGTGACAAGAGCCTTTGTTGTTCTCTAGGACTCCTGAGCAATCACCGAGGTCTGGAGGTGGGGGGGGGGGCTACAGAATCTAC-TCTTTTCTCAGGG-GGAGAAT--------------AAGCTTGCTTATCAAGAGAGATC--------TGGTACAACATGTAACCTGT-----------AGCCTGCCTCTACCACTCCTAATATT--GGTTGTAACTGATCCTGCATGACAGCCAGGAGAAGACACTTTGGTTTTCTCTGCA----CTGAGGAGAGGAAGGAAGAGCTGCGAATTGAGGGGCTGCCCCCAGGAAGTGTCGTCACAT-GTGTATTTGACAAAAAGAAACTGAGGCAGATCTAGGTGACACTGCTGAGGAGCACAGATGCCTCCACATGCCACATATGCAGATTCCAGACCTAACGTTGCTAGAGATTCATGAGTGCCAGCCTTTTGCAGGCTCCATACATCTCAGTG---GTAAGAGCTGATCTAGCCACAAGTCTCATGAAGGGC--CAGAACTTCTGTGGCCAGCAGTATGGCCTGGCGTAAGCTAGG----CTGCCATATAGCCACCATCAGGGCTTCTCCAGCATCACACAATAACACAGAACATCTTCATGCCTCAAAACTA--------------------TGTGAGGTGGACAGCAGATGGTGACAGAAGGGCCAGAAGCCAGA-AGGGACAGGTTGCAGTAAGGACCCAGGAAGAGCCCTCTGTGGCTCCAGGCCAGAATGG-TTCGGGTTATGGCTCTGTGTAAATT----TGGTGGAGAGGAGCATGATTAAGGCTTCAGCATTGGGCATCCATAAGGTAGTTATGGTGAGAGATGCATCTCATAAACCAGAGGGCTCCTGGTCAGGAGGAGCACATGACTGGTGGGACCAGGACTC--TACAGGCTAGGTACTGGCCATGGTACCGTATTTCCTGCTGGCACGTAGTGCCGATCTGTGCGGAGCTGACAGGGAAGC--AGGCACATATGGCACACCTTGCCT a score=170220.000000 s hg15.chr4_random 776045 1567 + 1219494 AGGCTGAGACCCCATCTCACTCGCACTG----CCGGGCACA-----GGGCCTCTCGCTCGGGTCCTTTCTAGGCAGTTCTCTGAGGCAGCACCAAGGTTCATGCAGAAACACACGCGCTGGGATGTTCTGTGGCAGACAGTACATCCCGCACCCATCAGCAGCTTCACCGAGGCGCCCACTGGGGAGAAGGTTGGTCTGAGAACTGCCCACCTCAGCTGGGTGGATTCCAGGCGGGGA--ACCTCAGAGAGGACACAGCTGCATTCAGAAACCAGAGGAAAAGTGCCGTCTGGGCGGAGGCAGGGTGTTCTGGTCTGATTTTGAGTCACTGTGTCATTTCCCTCTGGGGATTTGAAAGGAGCCACACACAGTGTTGAGCCTGAGGCGGGGGTG-GGGCCAGTGGCAGGGTAGGCCCTCATCACAGTCTCTAA-ATAAGTGTCACTTCTCAGCCCTGAACTCAGCTGAGTCACCCGGGGCTTCCCGGTGTAGGCTGTGTTAGGACGTGCACTTCCTTTGTCATTTGAGGGGAATTCTCAAAAATTATGTCACTGAGATA-CAG-----------------------------TCAGAATTGTAGGGTACAC-----ACGAGTTTCAGGAGACTTTTCATTCAGCTCTG-TAGTTGTTAGTGGGGGTTGGTTTGGGTTGTGGCTTCGGTGAC------------TCCTGACCCTGCGTGGGGCAGAGGTTAGATTCCTGTGTCCAGAATCACCTGGTTGAACCCGATTGTCTGCAGACAGGA---CAGTGTCATGGGCTCCAAAGGAGGTAAGCAGGGTGCATGGCCAGGCCCACCCTGGGCAGCTG--GGGGCCCCCT---CACTGGAGA-TCCTCTGGTTTACAATGGGATTCAGCTTCCTGCCTTCCCTGCTGTCTGTGATAATGGCAAATCTCTGGCAATGAGAAGACTTTATCATGTCTGGTGTGCCAATCCCTGCAGACATTATGGCTTTAGAATATTTACATTCCAAATATTTAA----------AAGACAAACAGCTCAAACTGGTAGGTGGGACGGGATAAGGACAGTGTGAAAGGTGGTGTGGCCTGAAGACCTCCCATCCGGGCTCTGGCCTGGGC-CAGGTGGGGTGGGCCTGGGCAGG----------GAGAAGGTGGTC---------CCTTGTCCCTGCTTTGCTTCTCTACCAAATGAATGATCACTACCCGCTGCACTGGGGGACGCAGTGATAATCTGTGGCCTCAGCCTCTGGGTCTAGCTTTCTCCCCTCTTGCTGTATGTGACA-----------GAGTGTCTTCTCTCTGTCCCTTCCTCATGCAGTCGGAACACACAGATGGGCACACCTCTGTCCAGAGTGTTATTGAGAAGTTGCAGGAAGAAAATCGACTGTTAAAACAGAAGGTGACTCACGTGAGTGTCTTTCACATTTCGTTTGAGAAGAACA-CATGGCTTACAAACTGTAAGTGAGGG-----TTCTTTCCTTGGCTGATGCCCAGAGTCGCCCCCCG-CCCTCTGGCCACTAGGACTTGATACACACAGTCCCTAGAGACTGGACTTTTTTGCTTAAAACGACGTACGGGACATGTCCTGTCCATCTCCATCCCCCTAAAATTAATCCACAAGTCAGTAAAGGAGATGCAAGAGTTAGCAGCAGG s mm3.chr5 116943384 1563 - 149719773 AGGCTGAGTCTGCATCTTATGTACACCTCTCCCCAGCCCCACCCCTGGGCCTCTAAATCATGTCCTTTCTAGGCAGTTCTCTAAGACAGGAGCAGTGTTCATGAAAATGTGTGTG--------TGTTCTGAGGAAAGGGATACA-----CAGGTATCAGCAGCTTGCCCAAAG-------TATAGAGAAACTCGATC-AACAACCATCCATCTCA--------GATTTCACAAAGAGATCACCTTAGAAGGAACACAGTTGTAAG---------------------TGTTTCTATATAGG--AGGTGCTCCTGTCCAAGTTTGTATCACTGTAACCTTCCCCT-TGAAGATCTCAAAGTAGCCTCAGA--------AGGCTACTGGGTGGGTGCTGGCTTATGGCGCAGAGGCATGTCAT-------------GTCAGTATCATTTCTCAGCCTTGGACTTGGCTGATTCATCTGGGGCTTCTCA--GCAGTCTGGGTTAGGACATGTACTTCC--TGTCATTCAAGGGGATTTCTTAAAACCAGTGTCTGTGCGTTACCAGTCCCTCTGTAGTGTTGAATGTCTGGGATTTCTGAGATATCGAGTATACTCCAGAAAAGTTT-ATGCTGCTTTCCCTTTGGGTCAGCCAACTGCTATTAGGGGTTAGTTTGGGGTGTGGCTTCTGGGATTGAATGCCCTGGTTCTGACCCTGTGTGAAGCACAAGTTAGGTTGCCTCATCCAGA-----------AAGTTCTCTTGTCTATAGGCAGGATTTCTGTCTTGGTGACTCTGCAGGAGGTAAGATGGATCTGTGGCCAGGCCTACACCAAGGACCTGAAAAAGCCTCCTGGATGCTGGGTATGTGTCTG--CTAGAGTAACACTATG-TTGCTGTCTTCCCTATTGCCTGTGATGATAAATAAGTTCTGGTGCTGTGAAGGTTTTACTACAGCTCATGTACTTATCCCTGTAGACTTGATGACAATTGAATGTTT--AGTCCAG--ATTTAA----------AATACAGACAGCTCATGTTGGTAGGTAAGAAGGAACAAGGACAGTATCAAGAGTGATAA-ACCTCGAGACCCTCCGCCAAGGCTGTGTCCTGGCCTCAGCTGGCAGTGGGTAGGGTAGGAGCTGGATCTGCAAAGTTTATTTGTTTGTTTTTTGATATCTGTTTTGCTTCTTCACTAAGTGAACAGTCATCACCTCCTACAGT-GCAGCTGCAGTGACGGTCTGTGACCTCAGCCTCTGGCTCCAGCTTCCTCTCTATTT-CTGTATGTTATACTCACACAGTGGCATGGCTTCCCTTTGTCTCTTCCTTATGTAGCTAGAGCAAACAAGCAGCGATGCTTCTGGCCAGAGTGTTATTAAGAAGTTACAGGAAGAAAATCGACTGTTAAAACAGAAGGTGACTCATGTGAGTATCT--AACATCTCATTGAAGAGGAACATTAACCCTGACAAATGGTAAATGGAGGCTTTTTTTTTTTTAAAGCTGGTGTCTAGAGGTGACTTCTGCCCCCCTGGCTGCTTTAACTTG--ATTCACAGTCTCCAGAGACCTGACCATTCTGTCACAGAGGATATAGTAAA---ATCAGGA-ACTCTCTGTCCTCCTAGAATTAATT----AGTCAATAAAAGAAGTACAAGAATTACCATCAGG s rn2.chr14 78724483 1507 + 107821284 AGGCTGAGTCTGCATCTTATGTAAGCCTCCCCCCAGCCCCACCCTGGGGCCTCTAGATCATGTCCTTTCTAGGCAGTTCTCTAAGGCTGCAGCAGTGTTCATGTGACTGTGTG-------------TCAGAAGTAAGGGATATA-----TAGCTACCAGCAGCGTCTCCAAAG-------TGTAG-GAAATTCCATC-AGCAGCCATCCATCTCA--------GAGTTCACA---AGATCACCCTAGAAGGAACACAGTTGTATA---------------------TGTTTCTGCACAGG--AGGTGCTCTTGTCCAAGTTTGTATCACTGTAACATTCCCCT-TGAAAATCTCAAAGTAGCCTCAGT--------AGGCTGGAAGGTGGGTGCTGGATCATGGCACACAGGCACATCAT----GTCTCTCAAGTCAGTATCATTTCTCAGCCCTGGACTTGGCTGAGTCATCTGGGGCTTCTCA--GCAGTCCGGGTTAGGACGTGTACTTCC--TGTCATTCAAGGGGATTTCTTAAAACTAATGTCAGTTATTTA-CAGTTCCTCTGTTCTGTTGAATGCCTGGGATTTCTGGGATATAAAGTATATTTGAGAAAAGTTT--TGATGCTTTCCAGTTGGGTCAGCCAACTGCTATCAGGAGTTAATTTGGAGTATAGCGTCCGTGACTGAATGCCCTGATTCTGAGCCTGTGTGAAGCACACGTTAGTTTGCCTCATCTGGA----------TAAGTTCTCTTGCCGATAGGCAGGATTTCTGTCTTGGTGGCTCAGCGGGAGGTAAGGTGGATCTGTGGCCAGGCC-ACACTAAGGACCTG-GAAAGCCTCCTGGATGCTGAGTA-GTCTCCGTTCCAGAGTGACACTATG-TTCCTGTCTTCCCTATCGTCTGTGATGATACATAAGCTGTGTCAC------------GTTACAGCTGGTGTACTTATTGCTCTAGACTTGATGGTAATCGAATGTTT--AGTTCAG--ATTTTAGTCCATATTTAAAATAGACAGCTTATGTTGGTAGGTAAGAAGGAACAAAGATAGTGTCAAGAGTGATAC-ACCTAGAGA-CCTCTGCCAAGGCTGTGTCCTGGCCTCAGTTGGGAATGGGTTGAGGAGGAGCTGGATTTGCACAGTTTGTTTG-------TTTGGCATCTGTTTTGCTTCTTCCCCAAGTGAGCAGTCACCATCTCCGACAGT-GTAGCTGCAGTGACGGTCTGTGACCTCTGCCTCTGGTCCCAACTTCCTCTCCACTT-CTGCATGTTATACTCACGCAGTGACATGGTTTCTCTTTGTCTCTCCCTTATGTAGCTAGAGCATACAAGCAGGGATACCTCTGGCCAGAGTGTTATTAAGAAGTTACAGGAAGAAAATCGACTGTTAAAACAGAAGGTGATTCATGTGAGTATCT--------------------AACATTAACCCTGACAAATGACAAATGAAGA------------------------CTAGAGGTGACTTCTG-TCCCCTGGCTGCTTTAACTGGATATACACAGCCTCCAGAGACCTGACCATTCTGCCACAGAGGACCTAGT-------TCCTGATTTTCTCTGTCCTCTTAGAATTAACT----GGTCAGTCAAGGAAGTACTAGAATTACCATCAGG a score=4672.000000 s hg15.chr4_random 777612 54 + 1219494 AGGTC------------------CATTTTCTAAGACAGCAAAGCTGCACCGAGTCCACCTCCGTT--------CATGCTG s mm3.chr5 116945439 75 - 149719773 GGGTTTCCCCCCTCA--GGGAAGCAGTTTTTAAGGCAGGAAAGTAACA--GAGTTTACCTCTGTT-AGATTATTATTATG s rn2.chr14 78727380 80 + 107821284 GTGTTCCCCCTCTCGCTGGGAAGCAGTTTTTAAGGCAGAAAAATTACACTGAGTTTATATCTGTTTAGATCATTAATATG a score=138695.000000 s hg15.chr4_random 777666 968 + 1219494 CTTGC--GTACGGGTGTCATCGTGCTGCCTCAGGATTCTCTAGCGGGCCTAGTGTCTGCTCTCTACAGAAC---AGGGAGGGGCAGCTTCCATTTAAGAGGAAACTCTCACTCAGCGAATCACTGCTAATA--CATAATTCACACTGGGTGCTGGCTTGAGCAGCTTTGTCAGCTGCCTTCACCGTGAGCTTTCCGGCTCCACCTCTTCAGGTTGAAGACCTCAATGCCAAGTGGCAGCGCTACAACGCCAGCAGGGACGAATACGTGAGGGGGCTCCATGCGCAGCTCAGGGGGCTGCAGATCCCCCACGAGCCCGAGCTGATGAGGAAGGAGATCTCCCGGCTCAACAGACAGTTGGAAGAGAAAATAAATGACTGTGCCGAAGTGAAGCAGGAGCTGGCGGCCTCCAGGACGGCCCGGGATGCTGCGTTGGAGCGGGTGCAGATGCTGGAACAGCAGGTGTCTGTCCCTCGGGCTCCGGACGGCACTGACCA-GATGTCTGCTGG-----------CCGGTGGTGGCCGAAATCATGGGACAGGCTGGGCTGAAGGCTTGGTGGCACTGAGTGGGCAGTGGTCACTGTGGGGGTGGGAGAAGCCTGGTGGGGCGCTTCCTCCTTCCTTGAGCAGAAATGTGTGTCTCGCCTCTCTTCAGATTCTCGCTTACAAGGATGACTTCATGTCAGAAAGGGCCGATCGGGAACGGGCTCAAAGTAGGATTCAAGAACTGGAGGAAAAGGTCGCCTCTTTGCTGCACCAGGTGTCCTGGAGACAGGT-AGAGTATGAGGGCGTTTTTCTTCCTGCTTAGGTTTAGTGTTTTTGTTTCTCTTCTCATGAGATTAGAGCCTTTCTGTGTCTGCCAAGGCCCTGATTTGCTGGTGATGAGGGTTGTGGCGAGCCCCTCCCTGCTGTGGGGAGAGCCACCTGGCCTGGTACCTGGGCGTGGTCATGGAAAGCCTCCCTGTTATACTG--TTTAGTTA s mm3.chr5 116945699 903 - 149719773 CATTC--ACATGGATGTCCCTATAATAGATCAGGTTCC-CTGGCAGGCTTAGAACTCTCTCTATACAAAAGAAAGGGAAAGGAAGGCAGGTTTTCCTTAGGAAAACCTTACCTGGTAAATTATTGCTGATAACCACAGATCT------GTGTTGGCTTGAGCAAAAGTCTC--------------------TTTTGGTTCTGTCTTTTCAGGTAGAAGACCTCAATGCTAAGTGGCAGCGTTATGATGCAAGTAGGGACGAATATGTGAAGGGGTTGCATGCCCAGCTAAAGAGGCGGCAGGTCCCTCTGGAGCCTGAGCTGATGAAGAAGGAGATTTCCCGACTTAACAGACAGTTGGAGGAGAAAATAAGTGACTGTGCGGAAGCAAACCAGGAGCTGACAGCCATGAGGATGTCCCGGGACACTGCGCTGGAGCGAGTGCAGATGCTAGAACAGCAGGTGT-----CCTCAGGCTCTGAGCAGCACGGACAGGGATGTTTGCCAGTTTACACACCACCGGCAG-------GGTCTTGGGACAGCCTCGGCTAAATGTCTGGTGGAACTGGGTGGGGTACAGTCACAG-AGTAGTGGGAGAAGGCAGGGAAGG-ATTTTCTCCTTCCTTGAATAGCCATGAATATTCCGTCTTTTCTCAGATTCTTGCTTACAAGGATGACTTCAAATCAGAAAGGGCAGATCGGGAACGAGCGCACAGTAGGATTCAAGAGCTGGAGGAAAAGATCATGTCCTTGATGTACCAAGTGTCCCAGAGACAGGTGAGAGTACAAGAGACTTTCTCCC----TTTAGA-----TGGGTTTTCTTCTTTTATTGTGAATTTTGAACAAAGATGT----------------ACTGGCTGACAATACTGTTGGTGATGTGCCATTCCCAGCT-------------------CTCGGCCTAGAGTGTGGCCATAGAGAACCTCTCTGTGGTACCGTATTTAACTG s rn2.chr14 78727609 899 + 107821284 TACTCTCATATGGATATTACTCTAATGTATCAGGGTTC-CTGGAAGGCTTAGAA--------------------AGGGAAGGAAGGCAG----TTCTTAGGAAAACCTTACTTGGTAAATTATTGCTGATAACCACAGATCC------ATGTTGGCTTGAGCAAAAGTCTC--------------------TTTTGGTTCTGTCTTTTCAGGTGGAAGACCTCAATGCCAAGTGGCAGCGTTATGATGCAAGTAGGGATGAATACGTGAAGGGGTTACATGCACAGCTGAAGAGGCGGCAGGTTCCTCTTGAGCCTGAGCTTATGAAGAAGGAGATTTCCCGGCTTAACAGACAGTTGGAGGAGAAAATAAGTGACTGTGCCGAAGCAAAACAGGAGCTGGCAGCCGTGAAGATGGCCCGGGACACTGCGCTGGAGCGAGTGCAGATGCTGGAGCAGCAGGTGT-----CCTCAGGCTCTGAGCAGCCCTGACCAGGATGTCTGCCTGTTT--ACACCACAGGCAGTGGCTGCAGTCTTGGGACAGCCTAGGCTAAATGTTTGGTGGAACTGGGTGGGATACAGTTATAG-AACATTGGGAGAAGGCAGGTAAGG-ATTTTCTCCTCCCTTGAATACAAATGAATATTCTGTCTTTTCTCAGATTCTTGCTTACAAGGATGACTTCAAATCAGAAAGGGCAGATCGGGAACGAGCTCATAGTAGGATTCAGGAGCTGGAGGAAAAGGTCATGTCCTTGATGTACCAAGTTTCCCAGAGACAGGTAAGAGTACAAGAGAATTTCTCCC----TTTAGA-----------TTTTTTTTTTATTGTGAATTTTGAACAAAGATGT----------------ATTGGCTGCCAATACTGTTGGTGACGTGCCATTCCCAGCTCTGGGCAGAGCAACTTCTCCTGGGCCTAGGGTGTGGCCGTAGAAAACCTGTCTGTGGTACTGTATTTAACTG a score=3235.000000 s hg15.chr4_random 778634 138 + 1219494 TGGAGGAGGCTGGCATGGCGGCCTGTCTTAGCAGAGG-TGGCTGTCCTCAGGGCCCGTCCGTCACTGTCATGCAGTCAGAGAGCATATCTCGGGCCTCAAAG------TGTGAGCTCCCTACGTGTCCTGACCTGTCTGTGAGAC s mm3.chr5 116946602 135 - 149719773 T---GGAGGTCAGCATGGTGGCCTGTGTTGGTAAAAGCTAGCTGTCGTCGGGGCCTTTCC-TGACTGCC-TGCTCACA-AGAGCATATCCCAGGCCTCAGTGCTTTACTGACAGTTCTGTCAGTGT-CTGGCCT---TGTGAGGT a score=43946.000000 s hg15.chr4_random 778772 585 + 1219494 GGGAACCCCGCTTACCTTGTCATGTAGATGTGAT---GGCCCTGGGTGTCCAGTAACATCCCCAGCTCAGCCTGGCACGTGGAGCTGGGCCTTGCAGGGCAGGGGCCCCTCACCCCACCCCTGGGCTCAGTGCTTTTCCTACCATGGGGTGCCTTGAGGGAGGCCTGGCATGAATGGGAACCGATGAAGTTCCTCAGTGTGTGACCCATG-GCCTCTTCCTTCTCCTC--------ACTGACTTGTGCTCTGCAAAAATCCAGGAGAAGTTTATGTAGCTCCTCATCAAGTACCTAACACACTTTTGGCCCTGGGAATAGCCT-GGGCCCCACTCAAAGAGCTTCCTCTCCTGGCACAGACTGAACAGTAGTGATGCCTCTTGAGAATCGATGCGTCCCGGGCTG--------GAGCTAGGACGTCAGCCGTGTTTC------AGGGTGTGAACAGGGACCCTGGGGCT--GTGAGGCCACCCCCCACTGCCCTG----TTCCGAGCAG-CCACTGGGCCTCAGTGGTTTCTGCTTCTCCTC---CGCATGAAGGGCACGGGAGAGTCATGGTGGA---CTATGGGACTAACCCTGGGACTAAGTCTGCAGCAGAGGGCTGGACA s mm3.chr5 116946737 548 - 149719773 AGAGACCCTAGTTACTATTTTGCAGAGGTAGGACACAGGCCCTGAACACTAAATGAGGTCCTC----TAGGATGGCCAGTGGGCCCG----TTG--------------------CCTCCTCTGTTTTTAGTGCT-------------------------GGTGTATGTGGTCAGTGGAAGTCTCTTGAGGCATGGAAAGCTGGACATACATGCCTTTCACCTCTCCTCCTACCGGGAGAGACTCCTGCTCCACAAATTCCTAGGAAAGATTTGTTATTTTAGCCACTTAGTATCC-ATACATCTTCTGTCCTGTGATAAACCC----------TCAGAGAACTTCCTGCCCTA--ACAGCTGGGATAATAGAGGTATCTC-TGAAAATCAGT------TAGGCTGAGCAGGCAGAATTGGTTTTGAAATAGTCTTTCCCAATTAAGATGGGAGAAGAA---CCAGAGATATGTGAAGGCCGGCCATACTCTTCTGTTTTCTTCTGACATTCTGCTGGACCTTATCAGCTTCTGCTTCCCTTCATCTGCACCAGGGGCACAGGGGCATCCTGGTAGATACCTTTGCTCATCAACCTTAAGCTTAGTTCATATCAG-GGGCTGGACA s rn2.chr14 78728508 538 + 107821284 AGAAACCCTAGTTACTATTTTGCAGAGGTAGGACACAGACTCTGAGTCCTA------GTCCTT----CAGGATAGCCAGTGGGCCTG----TTG--------------------CCTCCTCTGGTTTTAGTGCT-------------------------GGTGGATGTTGTCAGTGAAAGCCT-TTCAGGCATGGAAAGCTGGACACACATGCCTTCTACCTCTCCTCCTACCTGGATAGACTCCTGCTTTGCAAATTCCCAGGAAAAGTTTGTTATTTTAGCCACTTAGTATCC-ATACATCTTCTGTCCTGTGATAAACCCCAGACTGCCCTCAGAAAACTTACTGTCCTA--ACAGCTCAGATAATAACGGTACCTC-TGAAAATCAAT-------AGGCTGAGAAGGCAGCACTGGCTTTGAAATGGTCTTTCCCAATTAAGATGTGAGAAGAA---CCAGAGAT--GTGAAGGCTGCCTACACTGTTCTG---------AGCAG-CTGCTGGACCTCATCAGCCTCTGCTTCCCTTCATTTGCAACAAGGGCACAGGGGTGTCCTGGTAGATACCTTTGTTCATCAACCTTAAGCTTGATTCACATCAG-GGCCTGGACA a score=181667.000000 s hg15.chr4_random 779359 1912 + 1219494 TTTTTCTGGCCTTCATGAATTCAAGGAAGCATGTGATTTGGATTGAAGGAGCACTATTGGTACAATCGTGAGGATG-----GTCTCAGGCCGCCTCTTGAAGATTTTGGACCAGATGA--------ACTGGTTCCAGACTTGC------AGGCCC------AGATTC----TTACCCCCGGGGGTAAAGTTCCTGGTGGGGCCTGCAGACCTTGTACTAAGTGGCCTCTGGTTCCCTTTCAACAGTAGCCTGTGGCCCCTCGAGGGTTGCTCAGTCCCTAGATGGCACAGCCA-GGGACAGTGGTGCTGAAGGCATGGGTGATAAGCTGTAGTCCCACTGGGGAAAGTCCACATTCAGAC------------------------AGGAAGTGGAAGCACCAAGGCC---TGCTGGAATGAAGTTCCC--------AGGCA---AGCAGTGAGGGCCACAGGCTGCAGTGCTTCAGGACGGATGTTTGGAGAACATGTGCCAGATCATGCCAGGTGGTTGGTGGGGCCAAGCCAGGGACACCTCTTGCTGCTACTGAAGGACCCCCTGAGCCCCAGAG--TGCTCAGCACCCCCAGGCCCCACAGAGGAGGTGCAG-----AGTAGGGTTGGTACTCAGTT--TGCCCAGCTCCCCACCAGA-----GGCTCTGCCACCTCCACTCTGTGGTGGCCTGTGGGCCACGTCATCAGGGCCACCTTCTCAGTCAGGTCTCCTGGGGCCAATAGGTCCAACTGAACAGGACTTCCACCAAGGGGCTGGGGGGTGGACCACGCCAGGGCCTACTTCTTCATGAGCACATGACGGAGCGTGTGTGTGA--TCCTCAGTCATTCACTGAGC--------------------------------------------GCCCCCTTGTCTGGGCTCTGGGGCGCAGCAGGAAGC---AAAGTGAGGGGC--TGA-----------AGTTCCGCTC----------------AGGGATAGGTGAAGTG----CCTCTGGTTGCTGGAA---------------------------------------------------CCTGA---------------------------GACCTGGCTTTG-TGACCGTCAGCACAGCCCACGTATATACACCCTTGCCTTTTCTCCAGGATTCTCGAGAGCCAGACGCCGGCCGGATTCACGCTGGGAGCAAAACTGCCAAGTATTTGGCCGCCGACGCATTAGAGCTTATGGTGCCTGGTGGCTGGAGGCCTGGGACTGGGTCCCAGCAGCCAGAACCCCCTGCAGAGGGCGGGCATCCTGGCGCGGCCCAGAGAGGCCAGGGGGACCTTCAGTGCCCTCACTGCCTGCAGTGCTTCAGTGACGAGCAAGGGGAAGAGCTCCTCAGGCATGTGGCTGAGTGCTGCCAGTGACCGAGACTCACCCGTGCCCTTGCGGCCTCCTGGCCCGGTGCAGCTGCCCTCAGGGACAGGGTGGGTGCTCTCAG------------ATGCCATGGGTTGAGCTCTACTGAGAGCCAAGGCCCCTAGAATAGTTGCGGGGCACTCTGATCGTTCACTTTGGTCCCTTTGGCTATGGAACAGGCTGGGTCACAGGGAACTGCCAGTGAGGCTGGAGGCTGGAGGTGGAGATGGGGTCAGGAACATCTGGCAGAGGGAGGTCCCAGTCTGTG-----TCT--------------------CCATCAGGCTTAAGCCA-GAGCTATCTGGTGCTGGTGTGCCAGCCCCTCCCCCAGCCTGCCTA-----------------------GAAAGGGGTGGCTGCCTGAGGGAGTCACTTGTATGGTCCCCAGGGTGGGAGCCCCATCCTGTTCTATGGAATAAAGCGTCGCCTCTCTGCCTCGAACCAGTCAAATGGAGTATTGCGGCTGCACGTCACACTAGGGTGGCCACCCCCGCCATTGC-GAGCCACATGTCTGCACTGAGAA--ACTGCATTTCAGTAGCATTTGTCATCCAGCCGGAAGTTAAAGCACACTTACTT--TATTCACCTATTTTTATAATAAACGTTCTTGCTGCTGTGACTGCTCTGAGAATTTGTGTTGGAAGCTGGGGTGCAGGGACTGAACAGTATTTACAG----------------CAGCTGGCATGGGAAAACACTCCTGCTG--TTGCCTTCTGCCAG-GGCACCAAGA----CAAGGGGGTCA s mm3.chr5 116947663 2003 - 149719773 TTTTTCTGGCTTC------------------TGAGCTTTAGATTGCAAGGTCACTAATGGTACAGTC--AAATATG---ACCTCTCAGGCAGTCTTTTAATGATGT---GCCAGAGGAGTGATCTTACCTGTGCTAGGCCTGCCAAGCTAGGTCCTCTGAGGGATTCCTGATCAGCCCCAAAG-CTAGATTTCTGGTGGGGACCAGGGCCTTTGCA----------------------TTAATAGTAGTCTCTCAAGCACCCATCTTTGCTCGACCC--AAGGAGGACAACCATATGACAGTGGT----GAAGTGGGAGTGGTAAGACATTGTGCTGCTGAGAAAAATTTAAATTCAGAT------------------------GTGAAGTAATAGCACCAAGAGCAGGTGCTAGAGTAAGGCTCCCATACTCCTATGCATGTAGCAATGGGCACCACTGCCCAAAGTGCTTTGTGGCATTTGTTTAGTGTGCATGTGCCAGACTGTGCCAAG--------------------AGTGCACTCATGGCTGCCACTGTAG----------GTCTCAGAGGCTGTCTAGCA-CCTCGAATCGCATTGAGGTACAGTGGGACTTAGTTGGCCTGTTCCCTGGTTAATGCCCAGCTGCCCACACCACCCCTGGTTTTGTTTCTCTCACTCTGGTGTTA---GTGGG------TATCAGGATCACTTCCTTGACTGAATATCCTAAGGGTGAGGGCTCCACT----CAGGCCTCCCACTTG-----------------------------TGTTCTTTCATG---ATATGACCAAGTACCTATAGGACTTCTTCAG---TTCACTCAGCACTTTCATCTAGACAGCAAGCAGCATTAGGATTTGAGGAATGAGGTCTTCCAATTTAAGCCTTTAGAAACTCCAGAGAGC---CAAATAAAATACTTTGATTCTATAGGTTAGTTCCACACTCTTTGTAGAAACTCTTGTGGTATGCGGAATGAGAGCTGATGTTTGATGGAAGTGAGGCATTTTGATACAGAAAGAAGCAAGGCAATGGTATTTAAGGTCTATTCTGAGCTATGTCTGTAG--------------GGCCAGACTTTGTTGACCTCTAGCACAGCCCATGTAAACTAACCTTTGCCTTCTCTGCAGGACTCCCGGGAGCCAGGACCCTGTCGGATTCATACGGGGAACAAAACTGCCAAGTACTTAGAGATGGATGCACTGGAGCATGTGACCCCTGGCGGCTGGAGGCCTGAGTCTAGGTCCCAACAGATGGAACCTTCTGCAGAGGGTGGGCATGTGTGCACAGCCCAGAGAGGTCAGGGTGACCTTCAGTGCCCTCATTGCCTGCGGTGCTTCAGTGATGAGCAAGGCGAGGCATTCCTCAGGCACCTGTCTGAGTGCTGCCAATGAGCCAGACAT-----TGCCCGTGTGACC-CATGACCA-CCATAGCTGCTCTAAGGGACTGGGAGGG-GTCCTCAGACTCAGTTTTCAACTCAGTGTGTTGCATTCTCCTGGGATCTAGGGCCC---AAATGG--GCAGGGTCACTGGAAGGTCATCTTGTTTTCATTTGACCATGGTG-AGACTTGGTCAGAGGGAACTATTGACAGAGCAGGAGGA-------AGAGGTGGGGTCAGGGACATCAAG----TGGACATC---AGTTTTG-----TCTCACGTAGAGTTTGGAGTGAGCTGTCAATTCAAAGCTGCAAGCTATCAGTTGTGGGAATA--------TTCTGAAGCCTGCTTGCACCTAGAGTTATGCCACTTGCTGGAAGGGGAAGTTG-CTGTGGGAGCAGTGTGTCCTCTTTCCAGGGTGGTAGCTCCATCCTGTT-----GAGTAGTGAGATA---CACTCCCT--GACTGGTC-TGTGCTGCATTACAGTTACATGATACACTAG---AACCTTCCCAAACTCAGCAGAGCCACACAGCTGCATCCAGTACCATCACCCTGCAA-AACACTTGTATTT---CCAAAAGGGAAAGCACCTTTATTTCCTAATCATTTATTTTTATAATAAATGGCTTTACTACTGTG-TTGCTCTGAGAG-CTGGGCTGGAA---TGTGTGCAGGAAC-AATGGGAATTTTCTGGTTACTAAGGAGAGACCAGCTGGTAAGGAGAAACATTCCTTCTgtcttgcctcaattcacaggtgtcaagaagagcaaaggagtta s rn2.chr14 78729408 1966 + 107821284 -----CTGGTTTC------------------TGTGCTGTATCTCGCAAGGACACTAATGGTACGGTT--GACTATGCTGGTTCCTCAGGCAGTCTTTCAATGGCAT---GCCAGTGGAGTGATCTTACCTGTTCTAGGTCTGCCAAGCTAGGTCCTCTGAGGGATTCCTGATCAGCCCCAAAGGCTAGATTTCTGTTGGGGA------------------------------------TTAGTAGTAGCCTCTCAAACACTCATCTTTGTTCGATCC--AGGGAGGACAACCATGTGACAGTGGTTCT-GAGGTAGAAGTGGTAAGACATTGTTCCCCTGAGAAAAATTCAAATTCAGATAATAGCACCAAGTAGGTGCGGGAGGTGAGGTAACAGCACCAAGAGCAGGTGCTGGAGTAAGGCGCCCATACTTCTATACA--------------CAAATGCCCAAGGGG-TTTGTGGCATTTGTTTAGTGCACATGTACCAGACTGTGCCAAG--------------------AGTATACTCCTGGTTGCCATTGTAG----------GTCTCAGAGGCTGTCTAGCA-CCTCAAATCACATCGAGGTAGGGTGGCACTTAGTTTGCCTGTTCCTTGGTTAATGCCCAGCTGCCCACACCACCCC-AGCTTTGTTTCTCTCACTCTGGTGTTA---GTGGGGCATGGCATCAGGGTCACTTCCTTGACTGAATATTCTAAGGCTGAGGGTTCCAAT----CAGGCCTCCCACTTCATGGGTGGACAG-AAAGCTCACTCAGGCCTGTGCTTTCATG---ATACGACCAATTATCTGTAAGATTTCTTCAG---TTCACTCAGTACTTTTGTCTAGACACCAAGAAGCATTAGGATTTGAGGA--GAGGTCTTCTAATTTAAGCCTTTAGAAGCTCTAGAGAGTAGTCAAGTAAAATGCCTTGATTCCAGAGGTTAGTTCTACACTCCTTAAAGAAACT--TGTGATATGTGGACTGAGAACTGATGTGTGGTGGAAGTAAGGCATTTTGGTCTAGAAAGAAGCAAGACAGTAGAACTT--GCTCTATTGTGAGATATGTCTCTAGTTGTTAAAACCCAGGGGCAGGCTTTGTTAACCTCTAGCACAGCCCATGTAAACTAACCTTTGCCTG-TCTGCAGGACTCCCGGGAGCCAGGACCCTGTCGGATTCATACGGGGAGCAAAACTGCCAAGTACTTAGAGATGGATGCACTGGAGCATGTGGCGCCGGGCGGCTGGAGGCCTGAGTCTAGGTCCCAACAGATGGAACCTTCTGCAGAGGGTGGGCATGTCTGTACAACCCAGAGAGGTCAGGGTGATCTTCAGTGTCCTCATTGCCTGCGGTGTTTCAGTGATGAGCAAGGCGAGGCATTCCTCAGGCACCTTTCTGAGTGCTGCCAATGAGCCAGAGACA-CCATGCCTGTGTGACC-CATGACCA-----------------------------------------------GCAACTCAGTGTGTTGCATTCTCCTGAGATCTAGGGCCC---AAATAG--GCAGGGTCAC----------------------------------------TGGTCAGAGGGAACTATTGACAGAGCAGGAGGA-------AGAGATGGGGTCAGGGGCATCAAGC---TGGATGC------TTGTGGAACATCTCATGCGGAATCTGGACCGAGCTGTCAATTCAAAGCTGCAAGCTATCTGTTGTGGGAGTA--------TTCTGA--CTTGCTTGCACCTAAAGTTGTGCTACTTGCTGGAAGGGGAAGTTG-CTGTGGGAGCAGCGTGTCCTCTCTCCAGGGTGGTAGCTCCATCCTGTT-----GAGTAGGTAGGTGTCTTATTCCCT--GACTGGTC-TGTGA-GCACTACAGTTACATGGTACACTAG---AACCTTCCCAAACACAGCAGAGCCACACAGCTGTATCCAGTACCATCACCTTGCAAGAACACTTGTATTT---CC-AAAGGGAATGCACCTTTATTTCCTAATCATTTACTTTTATAATAAATGGATTTACTACTGTG-CTGCTCTGAGAG-TTGGGCTGGGA---TGTGTGCAGGAAC-AATGGGTGTTTTCTGGTCACTAAGGAGAGACCAGCTGGTAAGGAGAAATGTCCCTGCCATCTTGCCTCAATCCAGAAGTGTCAAGGAGAGCAAAGGAGTTA a score=259797.000000 s hg15.chr4_random 789036 2111 + 1219494 AGAACTGGGCATGTGCGGTGGGCGTCTGAGGGTCTCTAGGTCCCAGCATGATGCTTAGTGTGTCGGGGCACCCAGAGTTCCCCA--TCACCACTCAGGGCTGTGCAGTTCCCCTCAGCAACAGGCATGGTTCAGCACAGTGTTAAAGGCTGTCCATGG-GGAGAGCAGGGC-----AGGTACTGGGGGCCTGGGCAGGCAGCTTCCCCATAGGGCG-AGGCCCGGGCCTGGGCCTTTCCCCAGCCACCACCGCAGCCAGAAGAGGCAGCGGCTGGAGTCCCGGGGGCCTGCACTGGGG---------TTTCAAGGACACTACTGTTGCCGTGGTCATGGCCTGACCTGCTTCACTCTCTGCCCTATCATCCCACGAACAAAGGAACGTTCT-CTTCCTCACACCTGGAAAAAAAAACAAGTGAGGAAAGTTCGTCGTGCTGCACCTCCCCTGGTTGGTG---------ACCCTTTTCCAGCTTTCGTGCAATCTCCAGAGTTCTAGGACCTGCTGTCCCCACCTCATTCTCCTGCAAACCGGTGCCTGGGTGGGGGTGCCC---TGGGCCTTGTCTCCCCTGACCTGCC----TCGAAGCCTCCTCACCCTCCTCTGCCTTCCTGGTTCCACAGC-TC--GGGCCCCCATCCCATCTAC---------------TCACCCCTGCAGGGCCCTCACACAGGC-TCTGTCCATGAACAGCAGTCCCCAGTTCCAGACCTCTCACCTGGGTGGCCGGTGGACATCCCAGAC-------------TCACCATCCAGAA--------CTGGTCTCCAGTCCCACCTC---CAGGCACACAGC-GCAGGTCTTCACctctttctcctacctgcatcctgtccaccaggaaatcctgtggcctcatcgtccgaatacctcca---gaagc--tggctctccctaccctctccccaaccaggccctgccctattcaccttcaCTCAGAGTGAAGTCATACTCTGATAGGGCACACAGAGACAGGCTGAACATGAGGCTGGGAGAAGTGGGAGCTACTGAGTGTTCTAGGTAGTAAGAAGTAACCAGGATGCAGCTCCTTGGGAGCTTTCTGTCTCCTGCT-------------GCCTGC-TCTGCCTGGCACACAGAGGATGG-TGGGGGCACCAGGATGGGTGAGCCGTTGCCTGGAGAGACCTGGGACCTGC----------TCCGGGG-TGGT-GCCCTGGCTCCCCATGG-CGGACACATCACCTACACGCCCTCTCCCGCTATCCCCCCACTCCCCCAGCAGAAAG-AAGCAGCCGAGGTCTCCTGCTGTACTAATGTATTCCATCTTTCAAAAAGAAAGACATGATTTTAATATTACTTAACAATATGTTAAAAAAGTAGCCAGGCAGGCCTCCGTGTTAATACAGTCGTACACTCTATAACAGACTTGATGGTGTGAGTACTGGGTGGG---CTTGTTTTTAACTTTCTCGTTCTGCAAGGGATCTTACACAAGCTGGCTACAAGTCAGGGGGATCAAACACAAACAGCGCAACGTGTACACTCGGAGACAGTAGATTGTG---GAGAACAAAGGAGGCCTGCCCCGCCCAGCCCGCCTAGGGTGAGACGCAGGGGCACAGGAGAGCTGAGTGACGGCCGATACCCCGGTGAGGACACATGACAGGACAGGGCGCAATGCAGAGGCAACGGAGCCACGTGGATGATGCAAACTCCTATCTGGCCACGGCCCAGGCCTCCGAGGCCGCGGTGGTGGGAGGACTTGGCGGGAACTACTGTTCCAATCCGACAGCACAGAGCTACAATCGAAGGAGTCTCACGCACAGACTACACGCACACGAGCTAACGGCGTGGGCCGAGCATCAACTTCTCGGTCT-GGGGTTTCAGGCAGCA----CCAGCTCCGCACAGCCCTTGGCAAGCACCACGGCTCTGGGGCGCCAGCGAGGGGCGTGGCTCTTGGGGTGGTGCAGCCTGGCCTGCCTCTCGCGTGTCCCTCTCCAGGGAGTCCTCATTCAGTGGGCAGCAAAGGTGGCTTTTTTCAAGCTAAAATTGGACCAGTTGATAGACAGTCTTTGTCGGGTCTGTCTAGCAGAATCCAAGCAGAACCTGCAAAGACAAAAAGCCAAACAGTCACTGAAGGAAACAGCCCACAACCAAGCTGGTGCTTGCAAAGCCCATCACACTCCTGTTCTTGCCAGAAACTCACTGCGGGG s mm3.chr5 116958044 2020 - 149719773 AGAGCTGGG-------GGCTGAGTTCTCAGTGGCTCTGGGCCCCAATATGGTA-TTG--CTGTTGGGGCACCCAGGCTTTCCCT--TTGCCATTATAGTGTTAACAGTTCCTGCTGA---------TGCTACAGCTGGAGATTCTCGGTTCCTCTTGGCAGGTGGCTTGGCTCCAGAAGTA---GAGGCCCAGAAAGGCAGTGTG----TGGGAGGCAAGCCCAATGCTGGGCC--TCTCTAGCCATTTCTGCAACCAG--GAAATAACATCAGTA-TCCCTGGGAATAGAACTAGAATCTCTGCCCTTTCAAGAACACTGTTTATGCAA-GGTCACATCCCGGCCTGCTT--TTCTTTGTTCCACTGTCCCAGGAACACAGGGATGGGCTGCTTTGT--CACCTGGAAAAGAAAAGA----AGGCAACCT----GTTCTGTACCTCCTCTGGGTACTGATTCACACTTCCATTCTCTGG----TGAAAAGTCTTCAGAAGGCTAGGACCAACTGTCCCCTGC-----CTTCCACAA-----TGGCTCTACTAGCTTGTCATTGTCAGCCTTGGC-CTGATGATCTTCCAAC-TCAGAACTTAGTCATCTTCT---AGGTATTGGATGCCTCAGTGTT--GAAAATATGAGCCATGTAG---------------CTGAAATTACACGAACC---CACAGGTAACTGTGTA--------AGCTCTTTGTT----AGCTCCTAAAGGGGCAAAGATGGTACTAACCAAGCCA---CTACTCTTTCACTTTTCAATACCATTTACTTTGTTCCTAATTTAAACCCAATTAAGTATTCTACTACAGATCACAACCCCCCTGC---------------TCCCCCAGA------TGTGG---------ATAGGTACCTGCATACAAGGTTGTAAATAACCCTCTGCTCTGTGTTACAAAGCCTTAGTCTCTATTCCATGTCCTAGGG---------ACCTGGGTATAACCCACAAC------CTCATCATGCAACT---------------TCCTGGTAATTCTTGGCATGAACACATGAACCCTAATCATTTGTTTGGCTGTTGTGTCTTGCTCATT-------------ACCTGTACCAGCCTGGTGTTCAGAAGACAACTGAGGGAACCAGGA-------------ACCTG--GAGACCTAGGAACACC----------TTTGGGGTTGGTGGCCGTGGCTCCCTGGGAACAAATAT--CACCCATTTGATACCTCCCACCA-CACCCATCATCCCCAGCAGAAAGCAACCAGACTGGGTCTCCTGCTGTACTAATGTATTCCATCTTTCAAAAAGAAAGACATGATTTTAATATTACTTAACAATATGTTAAAAAAGTAGCCAGGCAGGCCTCCGTGTTAATACGGTTGTACGCTCTAGAACAGACTTGATGGTGTGAGTACTGGGTGGGTTTCTTGTTTTTAACGTTCTCATTCTGCAAGGGGTCTTACACAAGCTGGCTACAAGTCAGGGGG-TCAAACACAAACAGCGCAACGTGTACACTCAGAAACAGTAGATTGTGAAAGAGGACAAAGGAGGCCTG-CCCGCCCAGCCCGCCTTGGGTGGGACACA-GGGCACATGGGAGCTGAGGGATGACTGACACCCTGGCGGGGACAGATGACAGGACAGGTCGAGATGCAGAGGTGACAGAGCCACGTGGATGATGCAAACTCGTCTCTGGCCACGGCCCAGGCCTCTGAGGCCGTGGTGGT-GGAGGAATTGGCGGGAACTACTGTTCCATTCCGACAGCACAGAGCTACAATCAAAGAAGTCTCACTCACAGACTACACGCACACAAGCTAACAACGCAGGTCGAGCAGCAAGTTCTCGGTCTCGGGGTATCAGGCCACAGCATCCCGCCCTACACA-CCCTGGGTGGGTACTGAAGCTTAGGGGAGCCAGTGAGGGGCTTGGCTCTT-GAGTGGCGCAGCCCAG-CTGCCTCCCACACATCCCTCTCCAGGCAGTCCTCATTCAGTGGGCAGCAAAGGTGGCTTTCTTCAAGCTAAAGTTGGACCAGTTGATGGATAGTCTTTGTCGGTTCTGTCTTGCAGAGTCCAAGCAGAATCTGCCAAAACAAAAAGGCAAATTGTCAC---AGGACAGAGTCTTAACCCAGATTGGCAACCACCGAGCCAAC----CTATGATTCTTGCTAGCAATTCACTATGGAG s rn2.chr14 78740793 1949 + 107821284 AGAGCTGGG-------GGCTAGGTTCTGAGTGACTCTGGGCCCCAATATAGTACTTG--CTGTTGGGGCACCCAGGTTTTCCCCCCTCACTAGTATAGTGCCAACAGTTCCTGCTGG---------TGCTATAGCTGGAGATCCTGGGTTCCTCTTGGCAGGTGGCTTGGCTCCAGAAG------AGGCCCAGAAAGGCAGTGTC----TGGGAGGCAAGCTCAATATTGGGCC--TCTCTAGCCATTTCTGAAACCAG--GAAATAACACCTGTA-CCTCTGGGAATAGAACCAGAATCTCTGCCCTTTCAAGAGCACTGTTTATGCAA-GGTCACATCTCTGCATGACT--CTCTTTGCTCAACTGTCCCAGGAACACAGGGATGAGTTGCTTTCT--CACCTGGAAAAGCGAGCA------------------TTCTATACCTCCTTTGGGTACTG---------------------------------------------------------------------------------------------------------TCAGCCTGGGT-CTGATGATCTTCCCACCTCAGGTCTTATTCATCTTCTCCTAGGTGCTGGATGCCTCAATGTTCGAAAAATATGAGCCATGTAGTGTGCTGAGGTGAGACGAAAACTAGATGAACC---CAGAGGCAACTGTGTG--------ACCCTCCTGTT----ATCTCC-GAAGGGACAAAGATGGGTCTAACCAAGCCAGAATTACTCTTTCACTTTTCAATACC------CTTGTTCCTAATCTAAACCCAATTAAGCATTCCACTACAGATCACAACTCCCCTCC---------------TCCCCCAAA------TGTGG---------ATAGGTACCTGCATACAAGGC-GTAA-TAACCCTCTGCTATGTGTTACAAAGACTCAGTCTCTATTCTGTGTCCTAGTG---------ACCTGGGTATAACCCACAAC------CCCACTTTGCAACT---------------TCCTGGTACTTCTGGGCATGAGCACATGAAGCCTAATCGTCTGTTTGGCTGCTGTGTCTTGTTCACTTCTTTGTTCTAGTACCTGTACCAGCCTCGTGTTCAGAAGACCACTGAGGATACCAGGA-------------ACCCT--GAGACCTAGGAATATCAGAAAGTGACTTTGGAGTTGGTGGCCTTGGGTCACTGGGA-CGAATAC--CACCCATTTGATACCTCCCACCA-CACCCGTCATCCCCAGCAGAAAGCAACCAGACTGGGTCTCCTGCTGTACTAATGTATTCCATCTTTCAAAAAGAAAGACATGATTTTAATATTACTTAACAATATGTTAAAAAAGTAGCCAGGCAGGCCTCCGTGTTAATACGGTTGTACGCTCTAGAACAGACTTGATGGTGTGAGTACTGGGTGGGTTTCTTGTTTTTAACGTTCTCATTCTGCAAGGGGTCTTACACAAGCTGGCTACAAGTCAGGGGG-TCAAACACAAACAGCGCAACGTGTACACTCAGAAACAGTAGATTGTGAAAGAGGACAAAGGAGGCCTG-CCCGCCCAGCCCGCCTTGGGTGGGACACA-GGGCACATGGGAGCTGAGGGATGACTGACACCCTGGCGGGGACAGATGACAGGACAGGGCGAGATGCAGAGGCAACAGAGCCACGTGGATGATGCAAACTCGTCTCTGGCCACGGCCCAGGCCTCTGAAGCCGTGGTGGT-GGAGAAATTGGCGGGAACTACTGTTCCATTCCGACAGCACAGAGCTACAATCAAAGAAGTCTCACTCACAGACTACACGCACACAAGCTAACAACGCAGGTCGAGCAGCAAGTTCTCAATCTGGGGGTATCAGGCCACAGCATCCCGCCCTACACA-CCCTGGGTGGGTACTGAAGCTCAGGGGAGCCAGTGAGGGGCTTGGCTCTT-GAGTGGCGCAGCCCAG-CTGCCTCCCACATATCCCTCTCCAGGCAGTCCTCATTCAGTGGGCAGCAAAGGTGGCCTTCTTCAAGCTAAAGTTGGACCAGTTGATGGACAGTCTTTGTCGGTTCTGTCTAGCAGAGTCCAAGCAAAACCTGCCAAAACAAAAAGGCAAACTGTCAC---AGGGCAGAGTTTTTACCCAGACTGGCAACCGCCAAGTCA-----------ATTCTTGCTAGCAATTCACCAGGGAG a score=51196.000000 s hg15.chr4_random 806471 601 + 1219494 GGGAAGCCACTGCCATCAACTATTTTTCTAGCATGTGAGGGGGAG---CAGAAGTGATTGTGTGAGTGTTGGGAGTATGGGAGGGGTGTGTGTGGCTGGCCTGTCCTACTACAAGGCTCTTCAGAAGCCATGTTGTCTGGCTTGCTTGATGTAACTTCGTCCAAGACAACTAGAAGTGCCATGGAAAGAC----------AGAAAACCAAACATGTATGGCAAGCACACAGTCACCAC-GGTTTCAGACACAGCCTCCACATTTACCTTTTGAAATATTCCACTTCCCTCTCTGTCTCATCCATATCCACACTGTCTAGGTCAATATCTTTAGGTAGAAAGACATCATCTGTAAAACAAAAGAGAAGCAGCAAGTCAAATTACAGCAGCAGGCTATCTTATCAGAACGGAAGAAATCATTTGTCTTCGCTCAATTTAAACAACTTCAAAAATTGTAAACATTTTTTCTAAAATGAGATTTTAGAGGACAGATCTCTTTGGTGTGCTTATGAACACCCAGGTCTGACCTGGAAACTGCAGAACTCACATGTCCACTAAGCAAAGCAACTGTGGCTTC-AGGTCCCGTTAG-AAGACATGTTTGCCAGAACCTAGACTC s mm3.chr5 116969554 545 - 149719773 GGAGAACCACCACTCTCAACTGCTCTTTGAACACATGGACACTGATGAAAGAAGTTAGTGAAGATGAATTGTGTACACAAGAGTGG-GGGTATGGCTGGCATGAGGTGGGATAGGG----TGGGACTGTTTGCTATTTGGCTTGTT--ACTGACAATTATCCAGAGTGAC-CAAAATGTCACGGGACGGTCACAAGAACAGGCAAACTAGAAAAGCTTGGCAAACAGGAACCCACCAATGTCCTGACATGCAGGCCTTATA-TTACCTTTTGAAATACTCCACCTCCCGCTCAGTCTCATCCATATCCACACTGTCCAGGTCGATGTCTTTAGGCAGAAAAACATCATCTGTAAAATGAAGGGAAGGAGACACCTCACATTATCAGACT-GGCCATCTCACCAGAATAAATACAA-------------------------------AGAGTAAGACAAGATTCTGCAAAAGGCCAG------GAGGGCAGACTGCT--------CTTGTGACTACCTAGAGCTACTC-------------ACTCATGTGCCC---AA-CAAAGCCATTACTACTTCAAGGTCCCATCAATAAGACCTGCTGGAGAGAGCCCTAACTC s rn2.chr14 78752190 496 + 107821284 GGAGAATCACCACTTTCAACTGCTCTTTGAGCACATGGACACTGA---AAGAAGTGAGTGAAGATGAACTGTGTACACGAGGGCAG-GGATATGGGTGGCATGACGTGGGACAGGG----TGG--------------------------------ATCATATAGGGTGAC-AGAAATGTCACAGGAGGATCACGAGAATAGGCAAACCAGATAAGCTTGGCAGACAGGAA---------GTCCTGACAAGCAGGCCTCATG-TTACCTTTTGAAATACTCCACCTCCCGCTCGGTCTCATCCATATCCACATTGTCCAGGTCGATGTCTTTAGGCAGAAAAACATCATCTGTAAAGTGAAGGAAAGGAGATATCTCACATTACCAGAGT-GGCCATCTCACCAGAATAAA-------------------------------------GAGATAGACAAGACTCTGCAAAAGTTCAG------GAGAGCAGACTGCT----------TGTGACCACCTAGAGCTACTC-------------ACTCATGTGCTC---AAACAAAGCCATTACTACTTCAAGGTCCCAGCAACAAAACCTGCTGGAGAGAAGCTCAACTC a score=12364.000000 s hg15.chr4_random 807725 107 + 1219494 CAGGATAGCAGGGAAATCATTGATTGAGAATTACTCAATTTCCTAGACTCTCAGGCAAGTTTGAGAATTTCTACTTCTCTGTTCTGTTCTG--------------------GTCACTTATCTAATTC s mm3.chr5 116970145 116 - 149719773 CAGGACACCAGAG-GGCCACTAGTTGATGGACATTTTACTTCCCAGAATCTCAGTCCAGTCTGAGAATTTCAACTTTTCTTCCCTGTTGTGCCAGGTCTGA----------ATCACTTCCCTAAGTC s rn2.chr14 78752733 125 + 107821284 CAGG-CACCAACG-AGTCATTGGCTGAGGGACATTCTACATCCCAGAATCTCAGCCCAGTTTGATAATTTCAACTTTTCTTCTCTGTCATGCGGCATCTGACGGACACTGAGCCTCTTCCCCAAGCC a score=3337.000000 s hg15.chr4_random 816174 59 + 1219494 AAAGGAAGAGAAATTCCAGAAACAGACCCAAGTGCATATTGAAATTTACTGTAGGACAg s mm3.chr7 78929208 59 - 134401573 AAAGGAAGCAAAAGCCTAGAAAAGGATCCATGTGCATATAGACATTTGCTTTAGGACAG a score=118225.000000 s hg15.chr4_random 821519 733 + 1219494 CACACATGGA--AA-ACCAGGCATCGCTCAGAAATACCTTCCCGCTATTCTGTATTTACCAATTGAATTGTTGACTCTGTCTCCTTTCTTCTTCTTATTTTTCTTGTTCTTGCCCTTTGGCTGAGGGGACTCTGCCAGCACCAGCTTGCTGTTCTGCTGATGCTCACCGGGAGAGGTGGGCTCCATAGGGGTTGGGTTTGACTTTTCGTCCTTGATGTGGTTCAGCTGCTTTTTGTTATTGTTATTACTGTTGACTTTTCTCTCCTCTCTTTTCTGCTCTGTGATGGACATGAGGTCGACCACCTTAGCCTTTGACTCAGTCTGGGCCCGGGGCTTGGACTGCCCCTCTGTGGCCTTGGGGGGCTCTGTGGGCCTCCTCGCTGGCTCGCTGCTGGCCTTGCTGGTCTGCCTCAGCTTCTGCTTGCCATTTCCTTCTTTATGGTGCTGCATGATGTCGAAGAAAAAAGAGAGTGGCTCATGCTGCTTCCCATTCACCTCCTTGGGGAGGAGAAATTTGGA---GTCTCTGGTGTCGACGGGGTCTGCAGCATCCCCATCAGCCCCTAGCCCTGGCCTGGGCTCTGAGTGGTTCATATGCCTGGATGGGGAGTGAGAAGAGGTTTCTGGTTCTTCAGTTTGCTCTAGTGAGCCATTGTGGATGTTTCCAGAGTTAGGAACAGACTCTGTTGCTGCCTGGAAATTTCTAGTGAGCATGTCCAACTTGGGGCAGTCTTTACTT s mm3.chr5 116978896 614 - 149719773 CACACACAGACCAC-ACCAGCCAAGGCT-GGGAACAGTTCCCTTGTGATCTTTATTTACCAAGTGAACTGCTGGTTCTGTCTCCTTTCTTCTTTTTATTTTTCTTATTCTTGCCCTTGGGCTGAGGAGAACTGGCCAGAATCAGCCTGCCATTCTGCAGGAGCTGGCTGGGGGAGGGTGGCTCAGGAGTGACAGTGCTCAGCTTCTCCTCTTTGATGTGGCTCAGCTGCTTTTTGTTGTTGTTGTTGCTGTTGGTTTTCCTCTCCTCCCTCTTCTGCTCTGTGAGAAGAGCAAGGTCAACTACTTTAGGTTTCAACTCTGGCTGGGCCCGGGGTTTGAGCTGTACCTCTGTGGTTTTGGGAGGCTCTGTGGGCTTCCTGGCTGGCTCATTGCTGGTCTTGCTGGTTTGCTTTAACTTTTGCTTGCTATTTCCCTCCTTGTGATGATGCATCATGTCCAAGAGAAATGCAAGAGGCTCGTGCTGCTTCCCATTGACTTCCTTAGGTAGCAGAAGCTTGGAGGGGTCTCTGGGGTCCACAGGGTCTGTAGCATCCCCATTGGCTCCAGGCCCTGGCCTGCGCTCTGAGTGGTTCATGTGTCTGGAAGGGGAGTGAGAT--------------------------------------------------------------------------------------------------------------------------- s rn2.chr14 78761083 612 + 107821284 CACACACAGACCACCACCAGCCAAGGTT-GGGAACAGTTCCCTTGTGATCTTTATTTACCAATTGAACTGCTGGTTCTGTCTCCTTTCTTCTTTTTATTTTTCTTATTCTTGCCTTTGGGCTGAGGAGAACTGGCCAGAATCAGCCTGCCATTCTGCAGGTGCTGGCTGGGGGAGGGTGGCTCAGGAGTGACAGTGCTCAGCTTCTCCTCTTTGATGTGGCTCAGCTGCTTTTTGTTGTTGTTGTTGCTGTTGGTTTTCCTCTCCTCCCTCTTCTGCTCTGTGAGGAGAGCAAGGTCAACTACTTTAGGCTTCAACTCTGGCTGGGCCCGGGGTTTGAGCTGTACCTCTGTGGTTTTAGGAGGTTCTGTGGGCTTCCTGGCTGGCTCACTGCTGGCCTTGCTGGTTTGCTTTAACTTCTGCTTGCTATTTCCCTCTTTGTGATGATGCATCATGTCCAAGAGAAATGCAAGAGGCTCGTGCTGCTTCCCATTGACTTCCTTGGGTAGCAGAAGCTTGGA---GTCTCTGGGGTCCACAGGGTCTGTAGCATCCCCATTGGCTCCAGGGCCTGGCCTGGGCTCTGAGTGGTTCATGTGTCTGGAAGGGGAGTGAGAT--------------------------------------------------------------------------------------------------------------------------- a score=20243.000000 s hg15.chr4_random 822253 232 + 1219494 GCCTCTCCTTCTTCTTCTTTTTTACAGCTCTTAGCTTCTGAAGCTCCTGAAGCCGCTGAAATTCCTCCTTGAAACGAtcctcctcttcttcctcatcctcctcctcctccCGCCGCCTCTGCTCCTCCTGGAGGTGCAGGTGCTCCCGGGCCCTGGCCTCTGCTTCTAGGCGAGCTTTCTCCTCCAGCTGCCAATG--CAAAAAGAAGGCAATTTAAGACTACAGTGAGTGCTA---------- s mm3.chr5 116979611 149 - 149719773 TCCTCCTCTTCTTC--------------------------------------CCGCTG---------------------------------------------------------CTTTTGCTCCTCCTGATGATGCAGATGCTCCCGTGCCCTGGCCTCAGCTTCTAGGCGTGCCTTCTCTTCCAGCTGCCAATAACAAAAGAGAAGATGGCTTTAGACCATGGTAAGAACTCCAAAACTTGA s rn2.chr14 78761920 149 + 107821284 tcctcctcctcctc--------------------------------------ccgctg---------------------------------------------------------cttttgctcctcctGATGATGCAGATGCTCCCGTGCCCTGGCCTCAGCTTCTAGGCGTGCCTTCTCTTCCAGCTGCCAACAACAAAAGAGAAGATGGCTTTAGACGAGGGTAAGAACTCCAAAACGTGA a score=30565.000000 s hg15.chr4_random 822485 497 + 1219494 AAAATTAAG----------------TCATACAGAAA---AACTAAGATAAT------------TTCAAAAACGAA-------TCACATATGGAACA-TAAACTCTGA-AGAGGCTGTAATAAATCAAAAC-----TTAACACACACCCACCTCCAATTCTCTTACTCTGCAGGATTGTTAAACTTCATCTATTTACTAAAGTATATGCTTACTTATTTGTGTGTGTGTGTGTGGGGGGGGGGGTGGTAGTTAACAAAAAATTCCCGATAGCCTTTGACCTGGTACTAAACAC----AGTAACCAAGGACAAAGCAGCTGCAAAGCAC-----ACATCCAGGGAGTCAGCTACCCCCTCACAGGTGCGGCAGGGCATCATGCCGCCTGGCCGAGTGGATGATGTAACCAATACCACAGACTGCCCGGGCAGTACTGAGGCTGTACACGTGCCGCCAGAACTCTGAGCAAACCCACCTTTCCAGGCGAAGGCTAATGCATTCACTTGAACAGGGAATGTAAGAAATGTGTACCAGGCTGGTGCAGTGGCTCAC s mm3.chr5 116979884 410 - 149719773 cAAACTATGATGGCCTCCCCTCCCCACATATATAAATGTAATTAAAAAAATTACTCTAGAAACTTGAGATATCAA-------TCATATATTGAAAAATAAACTTTGATAGAGGCAGTAACAAAT--GTAC-----CTACAACATACGTACCTGTAATTATTTCACCCAAAAGAACTGTTAAATCTCATCTACCTACCA-AGCATATGCTTACTT---------------TACTGGGAACTAGGTGGC--------------------TAGCTTCTGACCAAGAAGTAGGTACCAGGAGTAGTCA--GAC-CAGCAGTTGTGCTGTGCGTGCAGCACCCATAGACCTGACCATCTCTCTATAGAAATAGCAAGGAATCAG-----CTTTCTGATTGCAT---------------------------------------------------------GAGCTCCTGACAGACTTTGCTGTCCAGGTGAGGGC-------------TGAACCAGAAATA-AGGACCTGCATA------------AGTAAGACAC s rn2.chr14 78762170 421 + 107821284 cAAATTATAATGGCCTCCCCTCCCTACACATATAAATGTAATTAAAAAAATTACTCTAAAAATTTCATATATTGAAAACTTTTCATATATTAAAAACTAAACTTTGAAAGAGGCCGTAACAACT--AAATAAAAACTTAAACATACCTACCTGCAATTATTCCACCCAAAACAACTGTCAGATCTCATCTACCTCCCACAGCGT--GTTTACTT---------------TACTGGGAACAAGGTGGT--------------------TAGCCTCTGACCAAGAAGTAGGTCCCAGGAGCAGTCA--GAT-CAGCAGTTGTGCTGTGTGTGCAGCACCCACAGAGCTGACCATCTCTCTGTATAGATGGCAAGGAATCAG-----CTCACTGATTGCAT---------------------------------------------------------GAGCTCCTGACAAACTTAGCTGTCTAGGTGAGGGC-------------TGAACCTGAAACA-AGGACCTGCATA------------AATAAGACAC a score=18760.000000 s hg15.chr4_random 823169 170 + 1219494 AAGCAATGTGTAGTAAAGAACTAGAAATTCCTTCTTCCCACCCTAGCAGATAA---------------------------ACAGAAGTGCCATATATTTTCACTAGTGTGACAGATGTGACAGAGCAAA------------TG-ACTCACTGTCCAACTTGATGGAAAATTAATTTTCATCCCAAGTAAAGACAGCATTTGAGTAGTGAT s mm3.chr5 116980294 197 - 149719773 AAACAAAATGTGTCCAAAAGTTTGAAAGTCC--CTTCCCACACTATCAGATAAAAGTC-----TCAATACACGTTGAACTACACAAGAGCAAAGGGCTTTCAGAAATAT--TCAGTTTCACATAGCAAAGTGGCCCCAATGTATTTCTGCTTTCCAACCTGATGGAAAG--AAGTTTCA--TCAAGTAAAGATTTCATTGTACGAATGAT s rn2.chr14 78762591 200 + 107821284 AAACAAAATGTGTCCAAAAATTTAAAAGTCC--CTTCCCACGCTAGCAGACAAAAGTCTCCATTCAATACATGTTGAACTACACAAGAGCAAAGATCTTTCAT-AATAT--TCAGTATCACATAGCAAAATGGCCCCAGTGTG-TTCCGCTTTCCAACTTGATGGAAAG--AAGTCTCA--CCAAGTGAAGATTTCATTTTAATAATGAT a score=103426.000000 s hg15.chr4_random 824927 1137 + 1219494 GACATTTGCTTTTTGTGACACACCATG--------------CCCTCTGGTAAGGAGGGAACTGCTC--ATGTCTTCCCATGAAG---ACTTATTT--TCCTCCCCTCTAA----TCAATGCCATGTGCTGGTCTTCATCTGGAACAGCA-GTGGGACAAGAGCAGCATGGGGGACATGCTCAGACCTGAGTCCAGAAGA--CTTCCCTGTGCCAAGTGCCCCGCCCCAGTCTCATATCAAAGA-CACTTCTGAACCCACAGGCCCCAAAAGCCCACCTGGGC---------------CTTTCTTCTATCATCTCTACAGTTGACGGCTCCTTTCTTCGAAAAGAAGGTTCTCCAGCAGATAAAGCTGGAGTGTCTGCTGCTGCCCT----------CATGATGGCCAGCACAAGA-------ACAAACCCATTCTACAAAAGGGGAAGTAATTTCCCGAAAACACAAAGTTAAGTTTTTTACCAGTCTCCAGTTCAGGCCACCAGAGACAGGCTGGCTCTCAGAACAAAGTTGTGGGCAAGTGAACACACGTCAGAGCCCCGACCTCCTGTGGCTCAGCCCTGCCTAGAGACTGGCGTGGCACGGCACCTTCAAATGCCCTCAGACCTGGCGCCTCCAGGTGCTGAGAACTGTCACTTGCCTTCCTTTGCTTATGCCTTGCTCGCTTCGCTGCACGCGTGCTGCTCACTGGTTTGGTTTCGGAGCTATTTATAAACTGCAACAAATCCTCCACCCTCCGATGGTCAACGACGCTTTCCCTTTCTGAGATCTGGTCCATTTTTTTAGGTTGCTCCTCTTTCCTCTTGGTCAGCCGTAAGCGAAGCTTTTCCCTCATTTCTGCATAATTTCTACTTGTTGGTGCAGCTGGAGGCTGAG----AAAAACAACAAAGTTATGCTTAAGttttaaaaattttgaatataataaatttCAGACCACACCTCCAAAAATAAACTGTTTT----------ATTACTCAAGTA------GTATATATTT-----------------------------------------------------------GTTGTGAAAAA-----TAAGGAAATACAACAACCAGCAGAA-AAAGAGAAAAACC----TATCAGCAAGTCACCCAAAAGTGGCATTTTGATACCTACTCTCAAATT--------TTACATATTCATGAAAAACCTGATAAAGCATGTATAGCTATGCACATAAGTGGATTTTTTAAACTGAAAAGGAAACAATTACAAATCCTGATTAATGTATt s mm3.chr5 116980539 1136 - 149719773 GATGTCTACTTTTCATGACGTGCTATGAAAAGCCCTGTCAAGTTTCTGGGGAG-TGGAAATTGCTCTCAGCAGTTTACACCAAGGA-AGCTGCCTAACCTTACACTTTATAATGTTGATGCTAAGAGCTGTCCTTCAAGTAGATGGGCCTGTGGGTCAGAACAAGAATGTGTGAAGT--------CTGTCTTAGGAAGAGGCTTGCAGGCACCATGGGCTAGAGCTCTATCTTCTATCAAAGGCCATCTCTCAGCTTCTAAACCTCAGAGTCCCATCTACTCTGCATCACAAAATCTCTTCCTTCTATC-----------------------TCTTTGGAAGAAAGGT--TCCTACA---AAAGTGTATGTAAGCGCTGCTGTCCCACTGGCCAGGCAGAGCAGGCTGCATGAAAGCCTATTACAAACTCAAT-----------------ACTTTGGGAGAAGACAAAGTGGTA--------CAGGTGCTAGTTCAGGCCTTCTGCGACAGACAGACTCCTAGAGCA----------CCAGGGCAGGCATGTCAAG-------------------CAGCCC----------------TAGCTTCGTATCT-------------------GTGCGCCCTGGTAGGGCGGGCTGTCACTTACCTTCCTCTGCTTGTGCCTTGCTCGTTTGGCTGCCCGACTACTACTAACTGGCTTGGCCTCAGAGCTGTTTATAAACTGTAACAAATCCTCCACTCTCCGATGGTCAACCACACCCTCCCGTTCTGAGATCTGCTCCATTTTCTTGGGTTGTTCTTCCTTCCTCTTAGTCAGGCGTAAACGAAGTTTTTCCCTCATTTCTGCATAATTTCTACTTGTTGGTGCAGCTGGAGGCTAAGGTAAAAATATAAATAAATTAGGCCTAAAGTTTAACAACTTTGAATATAACAAATTTCAGAATACATCTCTAAAAAT-ACCCGTTTTTCAAAGAAAAATTACTTAAATATTTA--GTATATGCTTAAAACTTAATATATGCCTTCAGATTGATTATAA----TAATATATGCTTACATATAACCATTGTGAAAGAAAAATTAAGAAAATAACTTGAGTGGCAGGATAAAAAGCAAAGCCTAATTATTACTATATAACCTAAAAGATGAGATTTATTAACTATCTTCCAATT-------GGTATACATTTGTG-AAAATCTAGCAAA------------ATATATACAAATGGGTTTTTAAAGCTGAAAAGCAA-----TACACATATTTATATGTATATT s rn2.chr14 78763053 979 + 107821284 GATGTCTACTTTTCATGACATGTTATG--------------GCCTCTGGGGAGGTAAAAATTGCTC--AGAAGTTTACACTAAGAACAACTGCCTAACCTTACCCTGTAAAATGCTGATGCTAGGAACTGTCCTTCAAGTAGATGGGCCCGTGGGTCAGAACAAGAACATG----------------------GGAAGGTGCTTGTAGGTACTATGGGC-------------------------CATCTCTTAGCTTCTAAACCTAAGAGTCT------------------------------------------------------------------------------------------------------------------------AGGAAGAGCAGGCTGCATGAAAGCCTATTACAAATTCAAT-----------------ACTCTCAGAGAAGACAAAGGGGTA--------CAGCTTCTAATTCAGGCCTTCTGAGACAGACAGATTCTCAGAGTA----------CCAGGGCAGGCATGTCAAG-------------------CAGCCC----------------TAGCCTGGTATCT-------------------ATGTCCCCTGGCAGGGAAGGCTGTCACTTACCTTCCTCTGCTTGTGTCTCGCTCGTTTGGCTGCCCGACTACTACTAACTGGCTTGGCCTCTGAGCTGTTTATAAACTGTAACAAATCCTCCACTCTCCGATGGTCAACAACACCCTCCCGTTCTGAGATCTGCTCCATTTTCTTGGGTTGTTCTTCCTTCCTCTTAGTCAGCCGTAAACGAAGCTTTTCCCTCATTTCTGCATAATTTCTACTTGTTGGTGCAGCTGGAGGCTAAAGTAAAAATATAAACAAATTAGGCTTCAAGTTTAACAACTTTGAATGTAACAAATTTCAGAACACTTCTCTAAAAATAACCTGTTTTTCAA--AAAAATTACTTAAATACTTAATATATATGCTTAAAAC--AATACATGCTTTCAGACTGATTATAATATGTAATATATACTTACA-ATAAACATTGTAAAAGGAAAATTAAGAAAATAACTTTAATGACAGGATAAAAAACAAAGTCTAATTATTACCATAGAACCTAAAAGATAAGATTTATAAGCTACCTTCCAATTCTCATTGGTTTCACATTTGTG----------------------------------AAATGGATATTTAAAGCTGAAAAGCAA-----TACACATATTTATGTGTCTATT a score=2634.000000 s hg15.chr4_random 826333 23 + 1219494 TCTACCTGTTATTTAACATGGTG s mm3.chr5 116981675 16 - 149719773 -------TTTATTTAGTACAGTG s rn2.chr14 78764032 16 + 107821284 -------TTTATTTAGTACAGTG a score=1017.000000 s hg15.chr4_random 826356 12 + 1219494 TGA--ATATCTTTT s mm3.chr5 116981781 12 - 149719773 TGA--TTATTTTTT s rn2.chr14 78764144 14 + 107821284 TCAAGTTACTTTTT a score=28070.000000 s hg15.chr4_random 826368 363 + 1219494 CATGTCAATAAATGTGTCTGTAGTATCTTTCCATC--CATTTGTGGGTTTCCTTTTTGGTGCCAAAA--------------AAAGCCC-------TGAATCCTACTGCCAAATTTCTTGCTAT--AAAAACATGTGAACATTTTAGGAAATGCAAACAGAGCTAAAGCAGA---AAAAGAACAACTATA-AGCCCCTGCTATTCCTGTCACCCATCCCTCTTA--AACAGTGGGTGATAATTGGTTGTAT-AAATTAAATCACAGCTCTGGAAAGATGGACAAGTATGTGTGTGTACCAACGCCCTCTGTATTCA---AACAAGAGAAACCCAACTGCACACAC------------ACAACGCTGCTGTCGCTGGCTACA----ATGTTCCACCATATGGATACACCATGGTTA s mm3.chr5 116981793 380 - 149719773 GATGTTGATAA----------ATCTTATTCTCTTCAGCAATCTTTACTTTCCTTTTCAGTGTTAAAAGGGGAACAAAAGGAAGAACACCTGGTTCTCATTCCTACTGCCACATTCCTTACTATTAAAAATCACACACATATTTAAGGAAATGGAGACAGAAC-AAAGCAAATGAAACAAAACACCCATA---TGCCTTCACTTC---TTATTTACCCCTCCTAGGGACCATGGACA------GGTTGCATTAAATACAGTTCCTGCTCTGGAGAGTTGTTGAAGCATGTA-GTGTAACAGTATCTTTTGTACTCATCCAACAAGAGGGGTCACACTATTCACACAAACTGCATTAGATAA----ACTATGGTGAGATTTAGGTAATAACCTACTTCATTGAC------TATTTA s rn2.chr14 78764273 354 + 107821284 GATGTTGATAA---TCTTTGTACTGTATTCTCTTCAGCAACCTTTATTTTCCTTTTCAGTGTTAAAAGGAAAACAAAAGGGAAAACAC--------------TACTGCCACATTCTTTACTGTTAAAAATCATGCAAGCAGTTTAGGAAATGGAGATAGAAC-ATAGCAAA-----CAAAACACCTACAATGCCCCTTCACTTC---TTATTTACCCTTCCTAGGGACCATAGACAACCCTGGGTTGCAT-AAATACAGTGTCTGATCTGCAGAGGTGTTCAAGCATGTA-GTGTCACAGTATCTTTTGCACTCATCCAACAAGAGG----------TTCACAC------------ACAA----ACTGGGGTGGGATTTAGGTTACAACCTACTTCATGGAC------TATTTA a score=2041.000000 s hg15.chr4_random 826732 20 + 1219494 CAACCTCCTAC---------------------CAATGGGTA s mm3.chr5 116982174 41 - 149719773 AAATCTCATAAACAAACACAAAGTTACAGTAGCAACAGGTA s rn2.chr14 78764728 38 + 107821284 aaaTCTCATAAACAGATACCAAGTTGCAG---CAATAGGCA a score=88056.000000 s hg15.chr4_random 826906 643 + 1219494 ATTCAACCTAGTACAGAATTTCTGCAAAGGAGCCCGTGTGTTGCACACTTCCCACATCATGATGCGCTGACCTCATGCACTCACCCCGCCGTGCCCAAAGAATTCGCAGTAGCAGCAGTCGCAGTACTTGCCCTCCTTCTGGTTGGTGGAGGTCGAGGTGCTGGAGCTGTGCTCAGAGCAGCTGTCCTCATCTGCACTCTCGTCCCCATCATCCTGCTGTGGGTCGTAGACACCATTCTCGCAGCGGTGCCCTTCGCAGTCAGGGTCACTGCAAAACCGCATACAAGCTCATCAGCAAGTGGCCGGCCCGGGAGGCAATGACTCACATTGTTGCACATGACCACCCACTGTCCTGCCCATTTCACAGACAAGAGGCAGCGCAGAGGGTGCATAGTCCCAGGGTTACTAGGGAGTCATACACAAGCAGCAAGGGGCTCACGTGGGAGACATGGCGTGTGCGCAT--GCATGCAGGCGGTCCCTCAAAGTGCTCACAGAGCGCCACTGAACAGGAACACGTAGTCTCTCCAATGACTCCTTCTGAGACTGCCCCTGCCACCACAGCTTCCATACTAAGGGGCTTCGAAAAGGGGTATAGCTTCAAACAGGCGAGTTCAAAGGTAACAGAATTTGTCTTAAAAAGAAA s mm3.chr5 116982925 600 - 149719773 aATATATCTAACACACAATTCTTGCCAAAGACTTACCAAGTCACACAACTGTCAGGTCATAATACCCTGGTATCATGCACTTACCCCGCCATGTCCAAAGAACTCACAGTAGCAGCAGTCACAGTACTTGCCCTCCTTCTGGTTGGTGGAAGTTGAGGTGCTGGAGCTGTGCTCGGAGCAGCTGTCCTCATCTGCACTCTCATCCCCATCATCCTGCTGCGGGTCATAGACCCCATTCTCGCAGCGGTGCCCTTCACAGTCAGGGTCACTGCAAAACCACATAC-AGCTCATTAGCAAGAAGCT-ACACTGAAGGCACTA------ATTATTCCTCATATCCACCCGCTGTTCTGCTCATTTTTCAGACCA-AGGCAGCAAAAAGAGCTCATGGCTCTGGAGT---CAGAGAATCGTGTGCCATCAGCCAAGAATACA-----GTGACTGGGCTCTGGCAGACATGTGTTCAGTAG-----TCATAGCATACCTACAGTGCCACTGGATGGACACA---GGACTCTTC--TGACTTCCT-TGAG------------ACCACTGGTTCCACAAT--GGAGATTACAAAGGACAT---GTTTCTAACAGGCAAGTTCAAAGGTAACAGAAATGATCTTTTATAAAAA s rn2.chr14 78765448 541 + 107821284 aATAT--CTAACACACAATTCTTGCCAA-----------GTCTCACAACCGTCAGGTCATAACACCCTGACAGCATGCACTTACCCCGCCATGTCCAAAGAACTCACAGTAGCAGCAGTCACAGTACTTGCCCTCCTTCTGGTTGGTGGAAGTTGAGGTGCTAGAGCTGTGCTCAGAGCAGCTGTCCTCATCTGCACTCTCATCCCCATCATCCTGCTGCGGGTCATACACACCATTCTCGCAGCGGTGCCCTTCACAGTCAGGGTCACTGCAAAACCGTGTAC-AGCTCATTAGCAAGCAGCC-ACCCTGGAGGCTCTA------ATCATTCCCCATAGCCACCCACT---------------------------------------------CATTGGAGT---CAGAGAATCGTGTGCCATCAGCCAAGAATACA-----GTGACTGGGCTCTGGCAGAC--GTGTTCGGTAG-----TCATGGCACACCTCCAGTGCCACTGGATGAACACA---GGACTCTTC--TGACTTTCT-TGAG------------ACCACTGGTTCCATAAT--GGGGGTTACGAAGGACGT---GTTTCTAACAGGCAAGTTCAAAGATAACAGTCATGATCTTTTATAAAAC a score=116434.000000 s hg15.chr4_random 827868 696 + 1219494 TGAGTGTTTGTTGTATTGTGTTTTTACTATATACACATTTCATTCATTTTCCTCTGATTCCACCCTAGGTATAACAAATACAACT------TATACAATGAGTAAA-AAACAATG-----CACACCCCCGATGCTGTCAGTGTTTAGGCGTAGTTGGCCCACCTATCCA------TGGCGGCCCACGGCCCCTGCTCTTCCCTCTGCAAAACTACAGGC------TGAGATGGGAGCCCCCC----TCTAC--CCATGGCCTCTGCTGGGGACATCCCTGCATTCCCTCGGCATTTCACTAGACTTTTCCACTGCATGGTCCCAGGGGAGTTTCTGTAGCTGTGTTAGTGAGGCATAACACCCATTTTCCAAAGTGCTCCCACGTCCCCAGTCAGGA----------CTTGGCTCACCTGCAGACACTTGGAGGGGCGCTAATGGAGCCATCTGTGGCCGGGGGTAGGGGTGC---------AGGACAGAAACTCTTGCGTGTGTCCACAAACCCAGGAGTTGTGGTTGCTGTTTTGGGGAATGATGGGGCTGCAAGATTTGCAAGGTGAGGTGTGGAGGCAGGTGAGAGCGCAGCAGGTGACAGCGCAGCAGGCGAGAGCGCTGGGAGGGGGGCCAAGCCCGTGGGGCTATTCCTCGGGGCGGCTGGGGCCGAGTGTCTGTGGTCCTCCTTGCTGATGCCATGAAACACGTCACCTGCATTTAGAGAGGCGAGAGTCACTGCCA s mm3.chr5 116983525 687 - 149719773 TCACTGTGTGTGGTAT--TAGTTTTAGTATGTACATCTTGGA--AAATTTCTGCAGATTCTACCCAATGTATAGCAGATACAATT------AAAAAAAAAAAAATACAAGCAAGGCACAGCACACCCTTAATGCCACCAGTG----GAGATAGTCAGCATCCCTGACCCTGGTCTTGGCAGTC--GGGCCATTGTTCTTTCCTCTGAAGAACTAGAGGCTGAGAGTGAGACTGGAGCCTCTCCAACTCCACGGCCTTGGCCTCTGTTGGTGAGGTCTCTTTCTTC---------TGCACTGGACTGGTTACCTGCCTGGACCCAGAGCACAGTCTGTAGCTATGTTAGTGCAGCATG------------------GCTCCCAACCCTCCACTCAGGGACCTGGGTTCTGTGGCTCACCTGCAGACACTGGGAGGGGCACTTATGGAGCCATCTGTTGTGGAGGGCGGGGGTGCCACAGGGGTAGGACAGAAGCTCTTGCGTGTATCCACGAACCCAGGGGCCGTGGTTGCAGTTTTGGGAAATGATGGGGCAGCAAGGTTTGGAAGGTGAGGTGTAGAGGCTGGAGAGAGCGCAGAAGGAGAC---------------AAGGCTGGGAGGGGGGCTAGGCCTGTGGGGCTGTTCCTTGGAGCAGCAGGTGCTGAATGTCTGTGATCCTCTTTGTTGAGGCCATGAAAAACATCACCTACATGTAGAGATACAAGAGAGACTGCCA s rn2.chr14 78765989 693 + 107821284 TCACTGTGTGTGGTAT--TAGTTTTAGTATATACATCTTGGA--AATTTCCTGCAGATTCTACCCAATGTATAGCAGATACAACtttaaaaaaaaaaaaaaaaaaaCAAGCAAGGCACACCACACCCTTAATGCCACCAGTG----GAGATAGTCAGCATCCCTGACCCTGGTCTTGGCAGCC--GGGCCATTGTTCTTTCCTCTGAAGAACTAGAGGCTGAGAGTGAGACTGGAGCCTCTCCAAGTCCACGGCCTTGGCCTCTGTTGGTGAGGTCTCTTTCTTC---------TGCACTGGACTTGTTACCTGCCTGGACCCAGAGCACAGTCTGTAGCTATGTTAGTGCAGCATG------------------TCTCCCAACCCTCCTCTCAGGAACCTGGACTCTGTGGCTCACCTGCAGACACTGGGAGGGGCACTTATGGAGCCATCTGTTGTGGAGGGTGGGGGTGCCACAGGGGTAGGACAGAAGCTCTTGCGTGTATCCACGAACCCAGGGGCTGTGGTTGCAGTTTTGGGGAATGATGGGGCAGCAAGGTTTGGAAGGTGAGGTGTGGAGGCTGGAGAGAGCGCAGAAGGAGAC---------------AAGGCTGGGAGTGGGGCTAGGCCTGTGGGGCTGTTCCTTGGAGCAGCAGGTGCTGAATGTCTGTGATCTTCCTTGTTGAGGCCATGAAAAACATCACCTACATGTAGAGATATAAGAGAAACTGCCA a score=15030.000000 s hg15.chr4_random 881542 263 + 1219494 ctaataacagagtatcaaactttgtagggcaaaagctgatagaactgtgcaaggagaaaccgatgaat---------caatgga-agtcttcaagggcacgcaatcagaaatgaacagatccagcaggcagagaatcagtcaaaacatagttgctgactgacagaactcaagagcaccatcaatcaattggacataa---tgagcatctgaagaccacttcactgaacaacggcagaacacatattcctctgaagctcacacggaacattcaccaa---- s mm3.chr5 116995778 232 - 149719773 ctaacaatgaaataatcaagtatgtgaagcaaaa----acagaagactgcaaagagaaataaaagaattttctaccatagttgg-agtctctaattc--ttgtattaaaaatggatgattcaagtaggcaaagg------------------------tgaggaaat----gaacacc----tgcaaatggatatagtcccttccttctacagattattcaac---------gcagaatattcagtcttctctagttcataggaaagagtcacctcttag s rn2.chr14 78779357 225 + 107821284 ctaacaatgaaatatacaagtatgtgaagcaaaag--aagagaagactgcaaaaggaaataaatgaattttctatcatagttgggagtctccaatccc-ttttattaaaaatggatgaatcaagcaggcaAGGA------------------------TGATGAAAC----AAACACC----AGCGAATGGGTACA----CTGCCTTCTACAGATTACCCAAC----------------AACCAGTCTTCTCTAGCTCATAGGGAATATTCACCGTTCAG a score=5623.000000 s hg15.chr4_random 881805 141 + 1219494 gacagaccaaattctgggccataaaacataccttaataaactcaaaaa-accagagattatacactgcatgcttttagatcacaatggaattaaagtagaaatcagtaacaaaaagatagttgggagatccccaaatatttg s mm3.chr5 116996132 115 - 149719773 caaacattcacttctgggccataa---acactcttataaattcaagagTAGCAAA------------CAGGCCTGGAAGGTGTAATTCA--GTGACTAGCACTCTATACTACAATGCTATTT----------CATTCATTTG s rn2.chr14 78779706 110 + 107821284 cAAGTATTCACTTCTGGACTATAA---ACAGTCTTATAAATTCAAGAGTAGCAAA------------CAGGTCTCGAAGGTGTA-------TAGACTAGCACTCTATACGGCAATGCTGTTT----------TACTAGATTG a score=11969.000000 s hg15.chr4_random 881946 177 + 1219494 gaaattaaaTTCTCTGGCACTTACAGTTTTTATTTTATGTAGTATTTCATTACTGTATTTTTCTCAGCAATACTTTGAACTTTCAAATAACTTATAC------TCCATATATAAATTCGGTATGTCACTGGTATGGAGACACTTGAAAACAGAAATTAGTCTTCAAGTCTTTTTAATTTCAAG s mm3.chr5 116996301 131 - 149719773 aTA-----------------------TTTTATTTTCCTTTTATATTTCACTGCAGTATTTTTCTTGTAGTTTCTTTAAACTTTTACATAGTCCATATCTATCCTTAACAAATAAA-----TATATCATTGGTACAG---------------------AATCTT--AATGTCCTTAAAGT-AAG s rn2.chr14 78779870 131 + 107821284 AAA-----------------------TCTTATTTTCCTTTGATATTTCACTGCAGTATTTTTCTTGTTGTCTCTTTAAACTTTTACATAACTCATATCTATC-TTAACAAATAAA-----TATATCATTGGTACAG---------------------AATCTT--AATTTCCttaaatttaaa a score=46226.000000 s hg15.chr4_random 882261 568 + 1219494 GAAAATAAATTTTTCATAGTACCCATGCTAAA-CTTTTTAGGTACTAAATATTTACCCACAAAGCCTAAAATATGAATTATAAGAATTACAACTACAATGACATAATGTGCCAAAAGGCAAAAACTGTGACCCCAGCACAGCAGAAACTCC--CCAAGGCCCCAACAATGCAAAAGTGATGGCAGACACAGTACACAAGGCCCC----------------CTCCACGTTCAGCACCCACCTTCTGCTCC----CTACATTCAGAACTTCTTGCCCAACAATCCTGCTGTTGATTATCTCTAAGAAACTTCCTCCAATGTCACTG-----AAATTTGTGCAATTCTGATATAGCTCA-------TTTGCTTCTTAAGCTGTCCACAACTCACTGGTGGACCAGGAGACCCCTTCAGGGCTGCTAACGCATTATGCATTTAGGCACAGATGTGGTCAACAGCATCCAACTAAGCCAAACTAAGTCAAATAACACAAACTAATCTTGTAAGACCTGGTAAGTGACAATTCAAGTTTGTTTACAGAAACGAACATTTTCATACCAGATGCAAATGAAGTATTTTGATAATTGTAT---CTTATGTTTCCA s mm3.chr5 116996432 539 - 149719773 GAAATTAAATCTTTTATAGTATTTACACTAAA-CATTTAATGCATGAAATATTTAGCCACAATGGCCAGAGTGTAAATTAAAACAAAAATAACAACCATGACATTAAATAGTACAA-GCAACAATTAAGACTTCACCACAGCAAAAA-TCTAAACAAAGCAGCAA-AAGACAAAGACATGGGCTGGCCCAA-----AAAACCTCAGTGTGAATGGTTA--------GCATAGCACCTACCCTTTGATTCTTGGTTATGCTGAAA--------CACCACACTT---------------CCTGAGAAA---GCTCCAGGGGAACTGAAGACAAACTTGTGCCATTCCAAAACAGCTCG------TCCTGTTTCTAGAGGGCCCTTCTACT---------------ATTACTCTGTGACGCTGTTAGCATATTGTGCATTTAAACAGTAAT---AGCCATTACAGTCACGTAAGTCTGCTTACCTCAAATGACATAAACCAATTCCTTAAGGTACCGTAAGATAAAATACAAGCTTGATTAAAGAAATCAGTATTTTCACACCAGATATACATGAAGTATTTTATCAACTGCACGTACTTCCCCTTCCA s rn2.chr14 78780001 544 + 107821284 gaaattaaatattt-ataGTATTCATACTAAAACATTTAATGCATGAAATGTTTAGCCACAATGTTCTGGGTGTAAATTAAAACAAAAATTAAAACCGTGACA----ATATTACAA-GTAACAACTATGACTTCACCAC---------TCCAAACAAAGCAGCAA-AAGATAGAGGCATCGGGTGGCCCAA-----AAA-CCTCAGTGTGAGGAATTGTCCTCTACACATGGCACCTACCCTTTGATTTTTGGCTATACTGAGA--------CACCACACTT-------TAACACTTCCCGAGAAA---CCTCCAAGGAAACTGGAGACAAGTTTATACCGTTCTAGAACAGCGTGAGCATGTCCTGTTTCTAGAGGATCCTTCTACT---------------AGTACTCTGTGGGGCTGT-AGCATACTGTGCATTTAAACAGTAA----ATCCGTAACATTCAAGTATATCTGCTTAACTCAAATGACACAAACCAATTCTATAAGGCCCCATAAGAGAAAACACAAGCTTGTTTAAAGACGTCAGTATATTTATACCAAATATACATGAAGTG-TTTATCAACCGC-TATACTTCCCCTTCCA a score=4671.000000 s hg15.chr4_random 882829 38 + 1219494 -------------------------CATAATAATGGCCACC-----ACATATTTTAAATGAATCAGTG s mm3.chr5 116997034 67 - 149719773 cTATTAACAGCATTTTATTTTAAACAAT-AAAAAGGTCTGCAATAGATGTATTTTAAATGGATCAGTG s rn2.chr14 78780596 68 + 107821284 TACTTAACACCATTTTATTTTCCACAATAAAAAAGGCCTTCAATAGATGTATTTAAAATAGATCAGTG a score=2402.000000 s hg15.chr4_random 882867 40 + 1219494 AATAGTC--------TTCAGTTTGCTGAAGTGGT----AGAAATAAC--------------GTTTA s mm3.chr5 116997317 66 - 149719773 AATATTTAAAAAAGGATCAGTGCATAGTTATGATACCAAGAAACAATGCTGTTGAAGTGCGGCTTA s rn2.chr14 78780887 66 + 107821284 AAAAAATAAAAATGGATCAGTGTATAGTTATAATATCAAAAAGCAATGCTATTGAAATGCAGCTTA a score=25016.000000 s hg15.chr4_random 882915 187 + 1219494 TTTCTAAGTTTCTATA---CCTCTACCGTATATGGCTTGA-CTCCATATTTGCTTTTCTATTCA--AATCTTT--------CTATATGATTAAAGTTTAACAGGTATCAAGAGAACAGATATTAGATACAAATGATGCTCCTAAAACATGTTTTTCTTCTTTTACCCATATAT---AGATCTCTAATTTCCTAAGAAAAGGCCA s mm3.chr5 116997391 196 - 149719773 TTTC-AAGTTTCTATCT--CCTTTACCATGTGTAGTTAGACCTCTGTATTTGCCTTCCTACACATGAATCTTTTGCATTT-ATCTATGGTCTAAGTTTAACAGG-ACAAATGGAATGGGTGTCAGATACAAA-AATGGTATTAAAA-AGAGTTGTCTTATTTTACCCTTTTATAGGAGACCGCTAACTTCCTTAAAAA-GGCCA s rn2.chr14 78781288 200 + 107821284 TTTC-GAGTTTCTAGAAGACCTTCACCATGTGTAGCTAGAGCTCTGTATTTGCCTTCCTACACATGAACCTTTTGCATTTTACCTATGGCCTATGTTTAACAGA-ACTAATGGAATGGGTATCAGATATAAA-AATGGTACTAAAA-AGGTTTTTCTTCTTTTACCCTTTTATATGAGACCTCTAACTTCCTTAAAAAAGGCCA a score=7154.000000 s hg15.chr4_random 883102 118 + 1219494 AAAGCCCGGG----------------------------------------------------------------------------------------------------------AAAATAATCAATTTTTAACCA------AAGGGGCCCCACAGT--CTTTAGTAATAATCAATTTTACTATCTTACT----TATTTTTCGGAACTAATTCTTGAATAGCTTC---CAGCAGCAAA s mm3.chr5 116997992 140 - 149719773 AAAGCCAAAGTAAGGAA---------------------------------------------------------------------------------------------------AAAAACAAAAACCAGTAAACAGCTAGTAAGCGTATTCCTAGTAGACTTGGGGAACATTAATTTGACTACTTTCTTGGGATATTTTAAAAAAATAATTCTTGAATAGTTTCAATAAGCAAAGAA s rn2.chr14 78781875 239 + 107821284 AAAGTCAAAGTAAAGAAAACAAATAGTAggggttgaggatttagctcaatggtagagcgcttgcctagcaagcgcaaggccctgggttcagtcctcagctccaaaaaaaaaaaaagaaagaaaaCAAACAGTAAACAGCTAATAAGGGTATTCCCAGTAGACTTGGGGAACATTAATTTGACTACTTTCTTGGGATACTTTTTAAAAATAATTCTTCAATAGTTTCAATAAGCAAAAAA a score=621.000000 s hg15.chr4_random 883220 13 + 1219494 AACATCTAACAGA s mm3.chr5 116998132 13 - 149719773 AATATACAATAGA a score=41679.000000 s hg15.chr4_random 883233 679 + 1219494 ATA---------TTATCTTTTCTTGGAACTAGGTAATAGAGCTCTCTTCAGGCTACAG--CAGGGAGTGGA---AACCTTCCTCACTTTACACCCAGAGAAAATCAGGCTACAAACCAGGCGGACCATGAAGATAGCCTGGTTCTGACTACATACCTGAAAAATGTTATTAAAAAGCATTCTATT-ATTAAGACATCATTAAAAGTTCAAACTGAGCAATATTCAATCTAACAAAATTTAAGCATGAATTTGGATGGTTGTGCCAAGTAATTACAATAGATGTGGCAAACTTATTACACTCTATTCTAAACCTGTGTCTGTTAATCTTCCACCTACGCCTCTCCCTAGCAAAGAGACAACAAACCTCACTTATGGGCTACA---TGTACCCCACTTCACAGTGACCCCTAGAGGGGAGAAAACACACATGTGTTTGGAAAAACTGTGGTCTGGAAAAAATCATTCCATGTCATGTCCTCCTCCCTTTCTGTTCCAGCTCAAAAGCAATGTTTTAAATAATAAATTAGGGTTTGAAATAAATTATATTTTTGACTGATTAGAGCTACCTTTGGACAAGAATAACTGGTACAAAGA-AAAAAAAGAAAACAATCAGAATTACGGTGAGTCATTCTGGTAAAGT----TAAGCTCAAAATAACTAGAGAGGCAAAGCTATCTAAGGTCCAAAGAAAGAAACCAGC s mm3.chr5 116999052 573 - 149719773 ATAGCCATTTCTTAATCTTTTCTCAGATCTAAG-ATTAAAGTTCTATCTAGAAAAAAT--TAGGGAGTTGACAGAAGTTTATACATT---ACCCTAGAGGAAAGAAGGGTTTAAGTTATAAAAC--ACAAGCAGAGCCTGGCTTTGACT-----------------------AAAACATTTTGCTAATAAAGACATTGTTACATATTCATATGGGGTGATACCAAGTCTAACAAAACCCAAGCACAGGTTTGGGTAGC--TTCTGAGTA---AAATCTAACTTG--AACCGTATT-----CATTTTTAAGCGTGG---TATTAATCTACTACCTGTGCCCCTCCCCAGTAAACACTCAGAGAACC-CATTTACTAGCCACCTATCATACCATACCATAGAGTAAACCC--------AGAAAAC-------------------------------CAAGCCCTTTCCATGTCATGGTCTC---CCTTTCTGTCCAACTTCAAAACCACTCTGTTAAACAAATGAATATAGCTAGGGAGTA-------TTAGGATTAGTTAGTGC----------------CAACTAGTA-----ATATAACAAAATCTCAA----CATTACGGTGAACCA-------GCAATACTGCAAGTGTAAAGCAGTTCAAGAGGCAAAGCAGACTGAGGTACAAGGAGTGAAT-TAGC s rn2.chr14 78782120 553 + 107821284 ATAGACATTCCTTAATCTTTTCTCAGAATTAGA-TAAAAAGCTCTATCTAGAAAAAAAAATAAGAAGTTGACAAAAGTTTATACACT---CACCCAGAGGAAAGAAAGGTGTAAGTCATAAAACCCACAAACACAGCCTGGCTATGACT-----------------------AAAACATTTTGTTAATAAAGACACTGTTACATATTCATACAGGTTGATACCAAGTCTAACAAAACCCAAGCATAGGTTTGGGGAGC--TTCTGAGTA---AAACTGAATGTG--AACCTTATT-----------TAAGTGTGG---TACTAATTTACCTCATGTGTCC-TCCCCAATTAACACATAGGGAACC-TGTTTACCA---------CATATCACATCATAGAGTAAACCC--------AGAAAAC-------------------------------CAGGCCCTTTTCATGTCATGGTCTC---------TGTCCCACTTGAGAACTGCTCTGTTAAACAAACAAACA--GTTAGGGAGAG-------TTGTGACTAATTAGTGC----------------CAACTTGTA-----A-ATAACAAGACCTCAGTCAGCACTATGGTGAGCCA-------ACGGT---GCAAGTGCAAGGCAGACCAAGAGGCAAAGCAGCCGAAGGCACCTGGAGTGAAG-TGGC a score=173460.000000 s hg15.chr4_random 883912 1566 + 1219494 CTAAGAATTTCACTGTAAAGTCTAAGATACTAAGTATACACATGAGGTT---------CTCTGGGAAGAAATGCATAAAAATCAACTTATTTCTACATCCTCACTCCACTTCCTGAATGGGCTCTTCACA--CTGGGTTTCTGGCAGCTTCTCCTTTCTGTACCCTCCC-CTCCCCAGTGCTCCATCACCTGCAGGGCGTTATAGTTTTCTGTGGCATCACACTTAGGGCTCTTCCTTTATTTAGGCTCGTGTATTTCTAAATGCTAAAGCAGCATAGACATTTTAGACCCTGTAGAGTCCAGCCAGTGTTAGAGGACTCATGTTGTATTCACATTATTTTACCTATCAAATTAAGAAGAAGAGCAAGCCCTGGAAGATCACAAGTAGATTACTGGTCTCCTGTGGAAATATTCCCTAGGTTTAACCTGTTAGAAA-TAGCACCTGAAAAATCCTTCTGTTCTATTTAATTCTGAATAAAAGAACTATGACCTTCACAGTTGTTTTTAATGATTGT-----TACA-ACTGTAAAGGTTCACAATTAC-AGTGCTTAAGAGATTATGGTGAAAGGAAACACTTGGAGACCTTCCTATCCAGAGCAGATGCTATCCTATGCAAGTTGCTA---ATTCACAGATTTCTTTGTTTGACTATGTACTCCTGTAGGATCTCAGTGAAGAGTGAGCTTTCAGACCCTTTTTGCCCTGACTTACCTTACTGTGTGTGAAGGGGGGCGTTGCATACAAGGTGGGGTGGATGAGAGGGCGTGGCAGGTGTGGAACAGTGTGCAAAGGCACATGTCCATGGATGTGAGGGTAAAGGTGCAGTGCAGGGTGTGTGGGCTTCTCTGGGCTCAAGAACTGATGGCCAGGAGGAAGGGCTCCGGCTGTCATTGCAGATGGTGTCAGTCCAGAAGCTTCCTGCTTACAAACATGACATTCACAAGTGTTTGGAGCTTGTTCAGCCTAAGAGGAAAGAAAAAAAACATACCTATTTA--GTGAAACAATAAATGGTATGAATTAAAGTCAGTCACATTCTGCCAAGTAGTTACAAAGCAAATACAAAGGTAAGTGGGCTTTTCCTGACACCCTGAGTTGACCAGGGCCTTCCATGCAAGGAAAACGAGGGACCCCAAGAGACTGAGACTGAAGAAGACGCACAGAGAAGAAAGGTGTACCTCATTCC---ACAGACAGACTC----AGGTAG-AGCCACTGGTTCTGAATCCTATGCCTATGCAGAAAATCTCTCTTCCCACATGTGAGCAGGGACAAGGGAACTAGTGAAGACGACAGAGTAGAGAGG-------------------------------------GGATGGCTGTGCTCCACTGGGCTCACACTGCTT-CTAAGTAGTCACACATGGATTCTCCAAAACAAAGCAGAGACGCGacttccggttacggtggagtgaagaggtcagtggctcctttccctcagggcaaatgtaaaactgaacacaattgtcaaaggcaaccattctgaggctctggaaatcagcccaaggaaaataccgcgacacatttattcatgcaaatcagctagaacttcaaggaagaacagcaag--tctgGCTTTCTTGTCTGGGACTCTTTCCATTTCCT s mm3.chr5 116999724 1481 - 149719773 CTCTAAATGTATCTTCAATGTCTAAAATGTTAAGTATATACATGGAGTT---------CTTTGAGGAGAAA--CTAAAAAACTGACCATTTCCTAGACTATCATTGCTTTTCCTAAGTGGGCTCTTGGCAGGCTGGATTT----TAAGGCCTCTCTTCTATCCCCTCCAGCTACACATTGCCATAG---CTTCAG----TCATAGCATTTCTTTGCAATGTAT-----ACTGCACTTTTCTTCAGGCTTGCATGTTT-----TGACAGGGC--CCTAG---TTTTCAAACTAAGGATGCCCAGAAAACATT-GAGGATTCATGCTATTTACAATACATTTTACCTATTATGGTAAGGCATAAGTCAGGCCATGT----------GTAGAAAAATGGACTTTTGTTA-AGTATT-CTTGAGTTCAACCTGTTAGCGGGTATCACCTG-AAAACTCTTTAATTCTA-------GTGAGTAAA-------------TCATGATTGTGTT---TGTTTGTTTACCTACACATTGTAAAGGTTCAACATTACAAGAGTTTGCGAGACTACAACCAAAGCACATAGTTGCAACCCATCCAATCAGGAGCAGATGCTG--CTATGCACATGAGTCAATATACCCACCCCTGTCTGCTAAAGTAACTGCTCTTGTCAGAGCTCAGTCATAAGGGAC-TTCCAGGCCCTTCCTGCCCTGGCTTACCTTACTGTGTGTGAAGGGGGGTGCTGGATACAAGGTGGGGTGGATGAGCGGTCGAGGCAGGTGTGGAACAGTATGCAAGGGTACATGTCCGTGGATGTGGGGGTACAGGTGAAGCGCAGGATGTGTTGGTTTCTCTGGGCTCAGGAACTGATGGCCAGGAGGCAGGGCTCCAGCAGTCATTGCTGATGCTGGTAGCCCAGAAGCTTCTTGTTTACAAACATGGCATTCACAAGTGTTCGGTGTTTGTTCTGCCTAAAAGGACAGAAAAAGAA-GTACTTGTATAATGTAGAACAAAGAATGGCATAAATTA-----AGCTGCAGTCAGTCAGATAA-TATAGAACGAACACAAAGATACAGA---------------CCTGAGATAACCAGAGACCTCACAGGAGAAGGTACAGATG----TCAGAG-CTGGTAATAAGGAAGGC-TGCAGAGGAGAGAGCTGAGCCTCACTTT---ATATGGGTATTTGCAGAGGCAGCAGCCACTGATCAGGGACC------------------------------CAAGTGAATAGGAATAAAGGACCCCATAAAGATAATAGAAGGATGAAGCTACAGGAAAAATGGCACCAAAAAAACCAGGACCACTGAGTGGC----GTCTGCTGGGGTCCTACTGTTCAATCAACAGCTGCA-ATGATACCTTCACTATGAAATGTAGACAGGA-TGCTGGCTG-GTCAGAAT-----GACCAGTGATACTTCTTTACCAAAGCAAATGTGAAAGTAAACACAGACGACAAA-ATAACACTTC--AGGCTCTAGAACTCAGCCAAAGCCAAATACTGTGAAGTCTTTAT---TTTAAGATAGCCAGAACTTCAAAGAAGAACAGGAAGAATCTGAACTTCCTGCCAAGG--CCTTTCCTTGTCCT s rn2.chr14 78782768 1470 + 107821284 CTCTAAATTTATCTTGAATGTCTAAAATGTTAAGTATATACATGGTTTTGGTTTTTGCTTTTAAGGAGAAA--CTCAAAAACTGACCACTTTCTAGGAT------GCTTTTCCTAAGTGGGCTCTTTGCAAGCTGGATTT---ATAAGGACCCTCTTTTCTCCCCTCTAGCTATAC--TGCCGTGG---CCGCAG---AGAATAGGATTTCTTTGCATTGTAT-----ACTGCACTTTTCTTCAGGCTTGCATATTT-----TGACAAAGC--CCTAG---TTTTCAAACTAAGGATGCCCAGAAAACACC-GAGGATTCCTGCTACTTGGCACATAATTTATCTGCCATGCTAAGGCAAGAGTCAGGATATGT----------GTAGAAATACAAACTTCTGTCA----------CGAGTTCAACCTGTTAGCAG-TGTCACCTG-AGAATCTTCCAGTTCTA-------CTGAGTAAG-------------GCATGATTGA---------TTGTTTACCTACACACTGTAAAGGTTCAACATTACAAGAATTTGCCAGACTACAGCCAAAGCACATGGCTGCAGCCCATCCAATCAGGAGCAGATACTG--CTCTGCACATGGGTCAGCATACCCACCCCTGTCTGCTAAAGTAACTGCTCTTGTCAGAATTCAGTCATGAGGAACCTTCCAGGCCCTTCCTGCCCTGGCTTACCTTACTGTGTGTGAAGGGGGGTGCTGGATACAAGGTGGGATGGATGAGCGGTCGTGGCAAGTGTGGAACAGTATGCAAGGGCACATGTCCGTGGATGTGGGGGTACAGGTGAAGCGCAGGATGTGTTGGTTTTTCTGGGCTCAGGAACTGATGGCCAGGAGGCAGGGCTCCAGCAGTCATTGCTGATGCTGGTAGCCCAGAAGCTTCTTGTTTACAAACGTGGCATTCACAAGTGTTTGGTGTTTGTTCTGCCTAAAAGGACAGAAAAAGAA-GTACTTGTAAAATGTAGAACAAAGAATGGCATAAATTA-----AGCTGCAGTCAGTCAGATAA-TACAGAACAAACACAAAGATACAGG---------------CTTGAGATGACCAGAGCCCTCACTGGAGAAGGTATGCATG-----CAGAG-CTGGTAATGAGGAAGGTATGCAGAGGGGAGAGCTAGGCCTCACTTTTCCATATGGGTATTTGCAGAGGCAGCAGACCCTGATTAGGGACT------------------------------CAAGTGAACAGCAATAAAAGGCCCCACAAAGATAATAGAAGGATGAAGCTATGGGGAAAACGGGACCAAGGAAAACAAGATCACTGAGTGGCTGGTGTCTGCTGGGGTC-----GTTCAATCAGCAGCTGCA-ATAAAACCTCCACCATGAAATGTATACAGGA-TGCTAGCTG-GTCAGAATGAAAAGACCAGTGATACCTC-TTAGCAAAACAAATGTGAAACTGAACACAGATGACAAAGGTAATGCTTC--AGGATCTAGAACTCAGCCAAAG--AAATACTAGAAAGTC--------TTTAAGATAGGCAGAACTTCAGAGAAGAACAGGAAGAATCTAGACTTCCTGCCAAGG--CCTTTCCTTGTCCT a score=39085.000000 s hg15.chr4_random 885599 436 + 1219494 CAGTAAAAGCAGTGAACTTAGAAGGGAATGAA--TAGGGAAGCCTGCAGCTCTGTTCCCTTGAGACTGAGGTCCCAACTGGGGTGAGTGGCA-AAGGAGACAGAAATCTAACAGAGAGAACCCTGGAAATGAGAGCGCCACGGAAGGGCTTCTTAAGCTGTCCACAACTCGCTGGCTGACCAGGAGAGCACAGTGCATGCACTGAGGACACCTCACGGGCTGGAGGAAGGGGCCAACACAGCTGA---CTTGAGAACTGGCTGAGTGCTGAGCGCATTCACCCCACAGCCAACAATGGAGCCCC--TGTGGATTCAAGGTGCATGGGCaacctc--------tgcccaaatcatcagc---tggccaatcagc-caggtgg-acaaag-ggcagacctctagaagccaaact---------aaaaaggagaaga---gaagaagtaagctgagacacccacagccacata s mm3.chr7 108438079 427 - 134401573 CAGTAAAAGATGCAAACTCAGAAGAGAATAGATGGAGAGAACCCCTC--CTCTGCTAGTGTGAATTTGCAGCCCCGGCTGGGGTAAGTGATGGAAGGATCCAGAAATCTAATG-----------------GAGGATGCCATGAAGGGGC-TAAAAAGCAATCTACATATCTGTGGCAG-CCTGGAGAATTTCTGATGTGCAC-ACGAAAGATTC----------GGCAGACAGCAGCAGAAATGAAATCTTCGAAACTTCTG-ATTGCAAAGTGCACCCTCCTT----TCTACATTCAAATCCCAATGTAGA---GAGGGGCACCATCATCACCCAGAATGTCTCCCCAGTCATCGGCAGATGGTCCATCAATGTAGATGGTACACAGAGGCAGTCCTCAGAAAGCCAGGCTGAAGTATTAAAAAAAAAAAAAA---GTAAAACTAAGCAGACACACTACCAACTACACA s rn2.chr1 196278673 419 - 276301343 CAGTAAAAGATGCAAACTCAG-------------GAGAGAACCCCTC-GCTCTGCTAGTGTGAAGTTGCAGCCCCAGCTGGGGTAAGTGATAGAAGGATCCAGAAATCTAATA-----------------GAGGATGCCATGAAGAGAC-TAAAAGGTTATCTACATATCTGTGGCAG-CCTGGAGAATCTCTGATGTGCAC-GAGGAAGGCTC----------GGGAGACAGCAGCAGAAATGAAATCTTCGAAACCTCCGGATTACAAAGTACACCCTCCTT----TCTACACTCGAATCCCAATGTAGA---GCGGGGCACCTCCATCACCCATAATGTCGTCCCAGTCATCGGCAGATGGCCCATCAATGTAGATGGTACACGGAGGCAGTCCTCAGAAAGCCAGGCTGAAGtattaaaaaaaaaaaaaaaaaGTAAAGCTAAGCAGACCGAGCACCATGCACGCA a score=164136.000000 s hg15.chr4_random 893521 1250 + 1219494 AAGAAAAACAAGATTCAAATGGAGATTGT--AAGTATGCCTTGACTCTCTTCAGTTCTAACCTTCAGAAATTATGGGAAACAAAATAATTTTGTATTCAGTAATGCTCATGTTTAGAGAAAATACACACAGAAAAAGAGATCCTTGGCAAAACAG--------CAAGC--AAAGTCCTACCTGCTGTGTTGGGTAGGATGGGGGTGGACTGTCTGCTTTGCTCTCCTCTGTCCTGGGGCTCCTGCTTCCCAGCACTCCATCTTCCTTCGGGGCCCCTGGGGGCTCCCCACTACTCTCGCCGTCCGCTTCTTCATCATCAGCTTCTGAGGAACTACTGCTGGTACTGCTTATCTGAGGAGACTTTAAAGACAATCTTTTGTAATTTGCACTTTTCAAAACAGAGTAATATAAAATATTAAAATGTC-AGACC----ATCATTTTATGTCATTTATTGTTGCT-----------ACGAAGAAGCCATGTCCATACCTCATCCTTCAGGGCCATGTTTTCCCCGCCACCATTCAATTCGCTGTGGATTCCATTCATGTTGGCCACCACCTCGGTATCATCATAATTACTCAATGGATAAATATCAGCAAATTTGGCTGACAATGGTGCAACATCTTCATCATCACTACAACTGACACAAGCAGAGATGGTCACTGTGAGGTCATTCAATTGTGAAAGACAATGAGTAA-ACCAGCCACTAAGCACAGATATTTCCTGGACAGATCACGGCTTTCATTTACAAAGAGTATTAGTTAAGTATCATTCCTACCAC-TAACATTTCTTAGTAACCTCAACATGAGAAAAATGCTTGGAAGATTAACATTTGTGCCATTTGGAAGAGTAAAAAACAAAAAACAAACAGAAAAACCTCCAAAAGTAGAAATATTAAGGAAACTACAAAAA-TTTAACCAGACTGATTA-----ACGTTTCCATTTGACCTGAAGAGCGCTGGTATAAAACTAGTCTCTCTGCTACTCCCAAGACAACACAATTTGTGATTAAAA--TTAAAGGGGTACCGATGGCAACCTTAGGTGTTTAGTGTTTGCTTTTTAAACCTTAGCTGTTTAGTGTTTGCTTTTTCAACTTAGGGCTGAAATTTTCAG-AAATAGTCAGTTGAACAAAACTTTAAAGGCACTTAT---GTAACAGAAGACTAATTTTTTTTGCTTTAAGGCCAGTCATGGCCTGGTCACTCATGATCGTAATTAAATATCAGCTTTAGCAAGACATCTAAGCAACAGGCAAATGAAAAATTTACTGAAATTAAt s mm3.chr5 117001355 1152 - 149719773 agaaaagaaaagaTTAAAATATGAGTTCTATAAGTATG-CTTGTTTCTCTACAGTACTAATCTTCAGAAACTGCTGAAATTAACATAATT----------------TACTTTTTATAGAAAACATACACCAAGGAAGAGATCTTTGGGAAAACAGAGAAACATGAAACAGAAGATCCTACCTGCTGAGCTGGGTAGGATGGAGGTGGAGTGTTCACATTACTCTCTTCTGTCTTGGGGTTACCATTTCCTATGGCCTCCTCTTGTTTGGGAGCTCCTGGGGGCTCCCCACTACTCTCACCATCAGCATCTTCATCATCAGCCTCTGAAGAACTACGGCTGGTGCTGCTTACCTGAGGGGACTTAAAATGCAGCATTCTGTAGCTT-TCATTTTCAAAAC--AGTAACATGAA----TGAAGTGTAAAGACCACCAACCACTTCCTA-CATTTACTGACACC-ACAACTCCTCATAAAAAAGCCACACTCATACCTCATCTTTCAGGGCCATGTTTTCCCCACCACCATTCAGTTCGCTGTGGATTCCATTCATGTTGGCTACCACATTGGTATCATCGTAGTTGGTCAACGGATAAATGTCAGCAAACTTAGCTGACAATGGTGCGACGTCTTCATCATCACTACAACTGAGGCAAGCAGAGACGGTCACCATGAGGCCCTTCGATTGGGGAGGACAGTGAGGAGCACCCCCCACCGAACAC-GACATCTCCTCTA-AGGTCATGGGTCT-GCTCACGAAGAGT----GTTCAGTGTCACTCACACTACTTAACACCTCTTAGTCACCTGAACACAAAAAAAA-GCCTGGATGAGTAACATCTGTGACATGGAGGATGGGAAAGAATG-------------------TCCCACAATAGAAATTCTGAGGAGACCACAAAAA-CTTA---AGACGAATTGGTATTATACTTTCATTTGGCCCGAAAAGTCCTGAAGTAAAA---------ATGCCATGCCCAAGaaaatataattt-ttattaaaatGTTAA---GATACAGGGAGCAACTTCAGGTCTTTAGTGTTTGATTTT----------------------------------ACAGACACCAAATTGTCAGAAAATATCCAGCAG-ACCAAACTCCAAGTG---TTAT---GTAACAACACATTAATTATGTTTGCT---------------------CCACTCAAGTCAGTTATTAACAATCAATGT--------CATCAATGTAAGGAGAAAATGACATGTTTGCTAAAAAAAAT s rn2.chr14 78787518 1104 + 107821284 -GAAAAAAAAAGATTAAAATACGAGTTTT------------CATTTTATTAAAACAGTAATCT---------GCT----TCAGTATA------------------------CTTATAGAAAATTTATACCAAGAAAGAGACCTTTGGGGAAA-----------GAAACAGAAGATCCTACCTGCTGAGCTGGGTAGGATGGAGGTGGAGTGTTCACTTTACTCTCCTCTGTCCTGGGGTTACCATTCCCTATGGCCTCCTCTTGTTTGGGAGCTCCTGGGGGCTCACCACTACTCTCAGCATCAGCTTCTTCATCATCAGCTTCTGAAGAACTACGGCTGGTGCTGCTTACCTGAGGGGACTTAAGAGGTGGCATTTTATAGCTT-CAGTTTTCAAAAC--AGTGATGTGAA----TAAAGGGTAGACACCACCAACCACTTC------TTTACTGACACCCACACCTCCTCGTAAAAAAGCCACACTCATACCTCATCTTTCAGGGCCATGTTTTCCCCACCACCATTCAGTTCGCTGTGGATTCCATTCATGTTGGCCACCACATTGGTATCATCATAGTTGGTCAACGGATAAATGTCAGCAAACTTAGCTGACAATGGTGCGACATCTTCATCATCACTACAACTGAGGCAAGCAGAGACGGTCACCATGAGGCCCTTCGATTGGGGAGGACAGTGAGGAGCACCCCCCACTGAGCAC-GACATCTCCTCTA-AGGTCATGGGTCT-GCTCACGAAGAGT----GTTCAGTGTCACTCACACTACTTAACACCTCTTAGTCACCTGAACACAAAGAAAA-GCCTGGATGAGTAACATCTGTGACATGGAGGATGGGAAAGAATG-------------------TCCCACA-TAGAAATTCTGAGAAAACCACAAAAAACTTA---AGACGAATCAGTATTACACTTTCATTTGGTCTGAAAAGTCCTAAAGTAAAA---------ATGCCATCCCCAAGaaaatataattt-ttattaaaatGTTAA---GGTACAGCGAGCAACTTCAGGTCTTCAGTGTTTTATTTT----------------------------------ACAGACATCAAATTGTCAGAAAATATCCAGCTG-ACCAAACTCCAAGTG---TTACTAAGTAACAACACAGTAATTATGCTTGTT---------------------CCACTCAAGTCAGTTAT-AACAATCCACTT--------CATCAATGTAAGGAGAAAATGACATGTTCACTAAAAAAT-- a score=20704.000000 s hg15.chr4_random 895076 261 + 1219494 TGAAATT--AATTTTAAACAGATTTCAAGGCTTTAGCCTACAGAGACCAC-TTAAGATGCAGCT--CTGGTGCATTAAAAGAGCTGGCACATTTAAGCTCAGTGCAATAAGATGCTCCAAGGTCCACAAAAACATGCACTGAGTCCATCTTCAGCCTGGGCACACAGCAACCTCCAGAAGGC-AAAACCCTAGG----AACTCGTCGTGATCTCACTTCCTAGAATGAGTGAAGAGTGTCCAGGACTACCAAA-TTCCGGTGTCTTTTCAAC s mm3.chr5 117002507 238 - 149719773 GAAAACCAAAACTTAAAGCAAAACTTCTGGATTTAGCCCGTAGAGACCACTTTAAAATGTGACTTCCTAATATATAAGA---ACTGACATGCCCAA-CCCAGTACTA------------------CCTAAAACTTGTACC-AATCTGTCT-CTATCCCAGTATACAATGATATCCGGAACATAAAAATCCTAGGTAAAAACCCTCTTAGGTTTGACTCCTAAGAA---------AAGGCCCAGTATTACTAAG-TCATTGTGCTCTTTTTGT s rn2.chr14 78788622 242 + 107821284 GAAAACCAAAACTTAAGCCGAAACTTCTGGATTTAGCCTATGGAGGCCACTTTAAAATGTGACCTCCTAATACATGAGA-GAACTGACATGTCCAA-CCCAGTATTA------------------GCTAAAACTTGCACC-AATCTCTCTTCTATCCCGGCATATGATGATCTCCAGAACATAAAAATCCTAGGTAAAAATTCCCTTAGGTCTGACTCCTAAGAA---------AAGGCCTAGCATTACCAAGCTCATTGTATTCTCCTTtt a score=61676.000000 s hg15.chr4_random 895337 799 + 1219494 ACATTACAAGTAACGTGCTAGAGTCTGGAGCTCACCAGAGGTAAGTACAAACAGCACCCACAAGGTGCAGAGTCCTAGGGCTTCCTGCAGGCCCACTGCACCTGGGACGCTGCCTGGGCCAATGCTCATACACACTCCT-GAGGATGACCATAGGCAcaat-tt-acagatgagaaaactgaggttctagtgaagtaactcagccat--ttgctccatgtgacagcaggaggcTTCACCAGCCCTAGCTCCGTAAAGATCCAACCCATAAGATCCAGGAAGTACTGTGTGGTACACTGACTACAATCACATTGTTCTTTTTAACCAACTTAGAAAA-GGCACCAAGAAAGAGACAATACAAATGAAAAGATAACACTGGAGATTTTCAAATCATA---GTTTAC-ATTTGGAAGACATTGATCACAAGCTGCTGAAGGCCCAGATGTCCCGAGAACCTAGGCTCCCCGTAACTGGTGATGGGCAGTTCCGGCCCAAGGAGAAAGGCTCCCACAGCCAATTTCTTCCACTACCACACGTGACACA--AGAGACCATAACTGACATCAGCAGCTGTGACA---AATGAACAGGGATGAAAT-TTTCCAT--------CTTAAATTTTCATTAGGC---TATATATGTTTAATTTT--TATGTTT----CAGTAAGAAGTTGGATAACAGCCAGCTGCAAAAATGTCAACACTCTTTCTTGTGCCCTGGAGAGTACACAGTGTCTCTAAGGCAATAAACAGCAGCCTGCAATCTTTGT---ATGAAGAG--AGTCAGTGAGTTTAAACCA-GTCCTTTCAGAATTATTTTGTCTGAGAACA s mm3.chr5 117002853 704 - 149719773 tCTTT-GACGCACTATACAAAAACCTTGAGCTCACCAACAGAAGA---AATAAGCACCCACCAGGAAGGGAGTGTG----------------------------------TGTGCTGGCCAGcac-----agcattcctgcagtgttatcactgccatagtgtttaccaatggggaaactgattctgaaatgaagtgaccaactcaTACCTGGCACACATGACAGCTGGAGGCCTCTCCACTCCAGA---------------------AAGACCCAGAGTGCACTGCAC--TGCACTGACTAAAATGATGCTG--CCATTTCATCTGTTTAGAAAACAGCACCATGAA--CGACAATGCACACT-AAGGGTCACAT---AGATTTTCAAGTCACAGAGGTTGACTACTTGGAAGACACTAACCACAAGTTGTTG-GGGCCTAGA-----------CATGAGCTGCCCA-GACCAACAGTGGGCAGTTCCA--CCCAGGCAGAAGGCTCCTATAGCCCAAG--TGCCACTACTG---ATAACACATCAGAGCTTACAACTGATATTGGCAGTTATGACAGTGAGTGAGACAGTGCGATACATTTGCATTTATCTAACTTCAATTTTCAATGGATTCATCTGTCTGGTAAACTTCCATATGCCT----CAGTTAGAAGCT--ACAATAGCTAGG-----AGA---CAAAACTCCTTAAAATGCCTAAGG--------------CCTGAGAGCAGAAGCAGCAG------AACTCTGCCGAATGAAGAGTCAACCATGGACTTCAACCCAAGGCCTTT-AGAATTATTTT-----AGATTT s rn2.chr14 78788971 711 + 107821284 tctt--gATGCACTATACCGAAACCTAGAGCTCACCAATAGAAGA---AAAAAGCACCCACCAGCAAGGGAGTGTG----------------------------------TGTCTTGGCCAACAC-----AGCATTCTT-CAGTGTTATCACTACCATAGTGTT-ACCAATGGGGAA-CTGATTTTGAAATGAAGTGACCAATTCATACCTGGCACACATGGCAGCTGAAGGCTTCTCTACCCCAGG---------------------AAGACCCAGA-----CTGCAC--TGCAATGACTAAAATGATGCTG--CCATTTCATCTGTTTAGAAAACAGCACCATGAA--CGACAATGCACACT-AAGGGTCACAT---GGCTTTTCAAGTCACAGAGGTTGATTTCTTGGAAGACACTTATCACAAGTTGTTG-GGGCCTAGAGTATTAAGGGACATGAGCTGCCCA-GACCAGTGGTGAGCAGTTCCA--CCCAGGCAGAAGACTCCTATAGCCCATG--CTCCACTACT----ATCACCCATCAGAGCCCTCAATTGATGTCAGCAGTTATGACAGTAAGTGGGATAGTCTGATACATTTGCATTTA-----CTTCAATTTTCAATGGATTCATCTGCCTGGTAAACTTCTATATGCCTGCCTCAGTCAGAAGCTGTATAACAGCTAGAGAAAAAAA---AAAAAATCCTCAAAATGCCTATAG--------------CCTGAGAGCACACGCAACAG------AACTTTGATCAGTGAAGAGTCAAGCATTGACCTAAACCCA-GGCCTTT-AGAATTATTTT----TGGATTT a score=182259.000000 s hg15.chr4_random 896373 1489 + 1219494 -------------------------------------------------------------------------------------------------------------------------------------------AACC--CTTTTGGAAATTAGCATGTGAAGCCTCCCCAAATGACAGGGTCACAACTCTGAAGAAATCTGGGAACAGCCAACTACAATGTGAATTGGTGACAGCTGCACAACAATGTACTTC-TAATCA--TGCGGGAACATGAAAAACAGAAACCTTCAACTGCTTGCTAAAGCGATCACCTGAGTTCTTAGCAAGACATGAAACAAGCATGAGTGCTGGGCTGACAGGGAGACAGGACAGACGGCGGACTGGTCACCCTTTAGG-AGAATGAGGAGATGTGAGGCCGGAATTA--GAGACACTTCTTCTCTGCATACCAACATGTTTTTTCTTTACTGGCCTTTATTAATTTACCATGTTTTTTTTTTCCCAGAT-----AAACAGTGTTAAAAGTTTGGGTTTACTGATTTCATGTTTTAAAAGCTGCATTAAAAACCTCAGGGTC--------CCTTGTC-----ATGAAAAGCACAATAATGATGTTCATACTTCTGTGGACATTACTGTATGT--ATTTCTCATTACTGGGGCGACTTAAATTTCGGAAACTTTATTACAAAGTCACAACTTACAAAGTTGGTGCCGAGCCACTGTCTGTGAGGATGAGCCTGGGGTGCTGCTGAATTGTGATGGGAGAGCTGGAGCCGGACCCCGAGCTTGCAGATGACACACTGGGCGGGCTCCTCTCAGCAAGATAGTCAGGAGCAGGATCCACTTGAAGTGGGAGCTGGTGAATGTGGATGTCATCAGTGACGGGGGGGTCCATGATACCACACGTGAGGATGTGTGAGAGACTGCAGTCATCGCAAGCACATCTGATCAGGAATTAAGGACAGTTACCAAGCCAACCAATGCACAAGACTAGACCATGCTCTCTAAGGGTCGGTTCTAGGCCTCCACTCAGCCCAGTGAAGGTCCAATGGGCCAGTCGTGCTGACACCACAACCCAGCCTTACCTTCTCCTGTAGTTGCAGTTGGGGCAGTCGGGCATGCTCAGCCGGGACGATAACATGTGCCTCATGGTGTCTGTGAAGTTGTTCTCGCCAGTAACTGCTTTCTTATTGGTTAACTAGAGGAAATTT----TAAAATGCTTTAATCTTGCAAGACCCTTCCCCGAGACATGGCTCATTATTTTTCAGTAATTCTGCTGACATGTATCATGTTCACGGGCACTGCTTCCTCAGCGGGACAGGACCAGGAATACAGGGGCAGCAGACCTGGAGTCGGCAGCAAGCTGG-----------GGGCTGAGCTGCAAAGGGCTCGGGTACCAGGAGACCCTAATCGCTTTTGTCTTCAGCAAACATGCTGCAGTGCGCCCTCACAGCACACAC-CTGATGCAGAAACCCGG------------------------CCTTTACCCTGTCTGCCATG--TGCTTGGTACTTGCAAGGTACTGAGAACAGAGCTGTAGGAATGAAAAGTGGCACGTGGAGGGCAAGGGGTCGGCCTCGGAGCTATTGAGGAAATGGCACCTCAACTTCTAACAGACAAGGTGAGCATCTGCATTTCAAA-GGAGAAGG s mm3.chr5 117004051 1453 - 149719773 aaaggaagagaaaaaaagaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagagaaaaaaagaaggtaaggaaaggacaggaaaggaagaaaaaaagTTATACA--CATGTGCAAATTAGTGTATGAAGCCTCTGCAAGCAACAGGGTCACAACT--------------GAGTTTTCAGCCCCTTTGCTAAT--ATGA------------AATGCACTTCTTTATAA--TGTGGGAGTACAGAAAACACAAACTTTCAATTGCTTGCTAAAGTGATCT---GAATTCTTAGCAAGACATGGAACGAGCATGA-CTCTGGGCTGACAATGA-AGAGGATGAACAGC-CACTGGCCACC--TCAGACAGACTGAGAAGATGAGA--CCAGAACTGCGGAGACA---TTTCCCTGCATACCA---------------ACTGGCAATTATAAATTTAC--TGAATTTTTTTTTTCAGGT-AATAAAACAGCATC---AGTTTGGGTTTACAAATTTCATGATTCAACAGGTGCTTAACACACTGAAAAgttttgttttgttttgttttTTAATAAAAAGCACTGCAATGGTGATTGTATTT----AGAC--TGATGTCTAG--ATTTCTCATCATTGGA------TAAATTTCTGAAAC--TATTATAAAGTCACAACTTACAAAGTTGGTGCAGAGCCATTGTCTGTGAGGATGAGTCTAGGATGTTGCTGAATTGTGATGGGAGAGCTGGAACCTGACCCTGAGCTTGCTGATGACACACTAGGTGGGCGCATCTCAGACAGATAGTCGGGAGCAGAATCCACTTGGAGTGGTAGCTGGTGAATGTGGATGTCATCAGTGACCGGGGTGTCCATGATACCACAAGTAAGGATGTGTGAGAGGCTGCAGTCATCACAAGCACATCTGATCAAGAATTAAGGACAGTTACCAAGAAAGCCAA---------------------CTCTGAAGGTTGGGTTCAAACCTCTGCTTGTATTAGTGCAGGGTGAA--GGCCAGTAGCACCCA---GGCAGCCCAG-CTCACCTTCGCCTGTAGTTGCAGTTGGGACAGTCAGGCATGCTCAACCGAGATGACAACATGTGCCTCCTGGTATCTGTGAAGTTGTTCTCTCCAGTAACCACTTTCTTATTAGTCAACTAGAGGAAATTTACCAAACAATGGCTTAAATTTACAAGACACTTTCTC----CAT--TTTAACTTTTAACAGTAAC--------CATTTA-CAAACCCAGAGGCCCACATTTTGTAGAAGGACAAAA-CAAAAACAAGGG---AGTAGCCCTGGAATCTGCA--------------------GGGCA---------GGGAACC-------------CACTTGGTGTTCTGGTCTTGGCCAGATA----------------CACACCTCGTGCATTTTTGCAGATAACCAGAAGGTAGGT---------------------------CTGCTCTGGATGCTCAGTACTTGCTAGACACT---------TCTCTACTGGAGAAGATTG---------------------GACCTGAGAGCTATCTAGGAAGTAACACCTAAACT--CAACTGACAA-ATAAGCAGTCGGATTCCAAAGGGAGAAGG s rn2.chr14 78790191 1441 + 107821284 -----------------gggggggggggtgaggaagaggaggaggaagaggaggaggaag----------------------aggaag----------aAGCAG------------CAGCAATAGCAGCAGCAGCGCTATACATCCATGTGCAAATTAGCGTATGAAGCCTGTGCAAGCAACAGGGTCAGAAAT--------------GAGTTTTCAGCCACTTTGCTAAT--ATGA------------AATGCACTTCTTTACAAAATGTGGGAATACAGAAAACACAAACT--CAATTGCTTGCTAAAGTGATCTTCTGAGTTCTTAGCAAGACATGGAACGAGCATGAACACTGGGCTGACAATGA-AGCGGATGAGCAGC-CACTGGCCACC--TCAGACAGAATGAGAAGATGAG---CCAGAGCTGCCAAGACA---CTTCCCTGCATACCA---------------ACTGGCAATTAGAAAGTCAC--TGG-TTTCTTTTCTCAGGTTAAGAAAGCAGCATC---AGTTTGGGTTTACGAATTTCATGTTTTAACAGGTGCTTAACACACTGAAAAGTCTTTTTTTTCTTTTTT-----ATAAAAAGTGCTGTAATGGTGATTGTATTTCTGTAGAC--TGATTCCTCATTATTTCTCATTATTGGA------TAAATTTTTGAAAC--TATTATAAAGTCACAACTTACAAAGTTGGTGCAGAGCCATTGTCTGTGAGGATGAGTCTGGGATGTTGCTGAATTGTGATGGGAGAGCTGGAACCTGACCCTGAGCTTGCTGATGACACACTAGGTGGGCGCATCTCAGACAGATAGTCGGGAGCAGAATCCACTTGGAGTGGTAGCTGGTGAATGTGGATGTCATCAGTGACGGGGGTGTCCATGATACCACAAGTGAGGATGTGTGAGAGGCTGCAGTCATCACAAGCACATCTGATCAAGAATTAAGGACAGTTACCAAGAAAGCCAA---------------------CTCTGAAGGTTGGGTTCAAACCTTTGCTTTTATTAGTGCAGGGTGAA--GGCCAGTAGCACCCA---GACAGCCCAG-CTCACCTTCGCCTGTAGTTGCAGTTGGGGCAGTCCGGCATGCTCAACCGAGATGACAACATGTGCCTCCTGGTATCTGTGAAGTTGTTCTCGCCAGTAACCACTTTCTTATTAGTTAACTAGAGGAAATTTATCAAACAATGGCTTAAATTTGCAAGATACTTCTCC----CAT--TTTAAC-TATAACAGTAAC--------CATTTA-CAAACCAAGAGGCCCACTTTTTGCAGATGGACAAAATTAAAAACAAG---------ACCCTGGAATCTGCAG---GCAGGGTTAGCCAAATGGGCAAAACATC--AGGAGTC-------------CTCTTGATGTTCTGGTCTCTACCAGACA----------------CATACCACGCACAATTCTGCAGACAACCAG-AGGTAGGTCTGCTGTAGACACCAAGTTTACTCAGCCTGCTCTGAGTGTTCAGTACTCGTCAGACACT---------TCTCCACTGGAGAAGACTG---------------------GACCTGAGAGCTGCATA-GAAGTAACACCCAAACT--CAACTGACAA-GTAGGCATCCAGATTTCAAAGGGGAAAGG a score=5548.000000 s hg15.chr4_random 897862 32 + 1219494 AACTCTGGACCCACTCTGGCAATGGGACAGGT s mm3.chr5 131486108 32 - 149719773 AATTCTGGACCCTCTGTAGTAGCAGGACAGGT s rn2.chr4 9079705 32 + 183307734 AATTCTTGACGCTCCTTGGTAGTAGGACAGGT a score=38968.000000 s hg15.chr4_random 898921 327 + 1219494 AATTAGTTTATCTTGAGATTAAAAACACCATCTTGAACAGTTTTTAACGCTGGCAAAACATGCCAATGTGGTCCTCCAATGCTGTTC--TAACAAAGCACAT---------CAACATGCAGAGAAGTCATTTGCTGTCAGGACAGATTTCTACTTCCTTTAATTGCCTCTCTTATTGACAAGCTTACCTGTTCTTCAATGAATCTTCTTTGTTTAAAAAGCTCCCAGTCTTCTGTTAACATGCGCTGCTTGGTTTTCATTGTCATCTAGTAAGGGGATGTAAAAA---ACAGAAAAAAAAGAAAAACTTTAATACCTGCGACAATTATACAAGACATTTTC s mm3.chr5 117005726 316 - 149719773 AATCAGTTTATCTGAAAGTTAAAATCACTATGTTTAATGACTTTT-ATACTGGCAGGAGATGCCAAT---GGTCTTCATTGGTATTCTGTAACAAAGAGAAT-------GCCTAGATACTAAGGTGACACTTGT--TCTGTACAG---------TCATTTACATGCCTCTCCTGT---CAATCTTACCTGTTCTTCAATTAATCTCCTTTGTTTAAAAATCTCCCAGTCTTCTGTTAACATGCGCTGTTTGGTTTTCATTGTCATCTAGAAAGGAGATATAAAAACACACATAGAAACAAACAAACCAAAAACCTTCGTAGTAACTACACAGAACACTCAT s rn2.chr14 78791844 278 + 107821284 AATCAGTTTCTGTGAAAGTTAAACTCACTATGTCTGATGACTTTC-ACACTGGCAGGAGATGCCAAT---GGTCTTCATTGGTGTCCTGTAACATTGAGCATTGAGCCCACCTTTATACTAAGATGATACTTGC--TCTGGACAG---------TCACTTACACGTCTCTCCTGT---CAATCTTACCTGCTCTTCAATTAATCTCCTTTGCTTAAAAATCTCCCAGTCTTCTGTCAACATGCGCTGTTTGGTTTTCATTGTCATCTAGAAAGGAGACATTAAAACATACATAGAg--------------------------------------------- a score=11577.000000 s hg15.chr4_random 899248 141 + 1219494 AAGAGGAGACTTTC------------TTAAAATGATATATATGAGAGAAACATCATCTGCAA-ACAGAATAAAG------ATACAATACTACAAATATGTTAACAGGTATTTCTTTATTTTACTCAA-AC---------TCATCACAAGTACTTTTCTCACATGAAAGAC s mm3.chr5 117006224 151 - 149719773 aAAAGAACACTCTCAAGGAAGATTCTTTTAAATGATA-AAATCAAAACAGGAG----TGCAATACAAAACAATGAACTATATACAAAAC----AATGAGCTATCA--CATTTCAGCCTTCGGCCTGACACT--------TTATCTTCAGTACTCTCCTCATGTGGAAAAC s rn2.chr14 78792260 159 + 107821284 CACAGAACATTCCCAAGGGAGATTCTTTTAAATGATA-AAATCAAAAAAGGAG----TGCAATACAAAACAATGAACTGTATACAAAAC----AATGTGCGACCA--CATTTCAGTCTCCTGCCTGACACTTAAGAATATTATCATAAGTCCTGTCCTCACAAGGAAAAC a score=40488.000000 s hg15.chr4_random 909007 527 + 1219494 CCTTCTTCCCAGTCCCTCA-CAGCACTGACAAGGAACACTGACAAGGAGCCACAGGTGGCATCCACATGGCACTCACCATGCCAGGGCAGACATGGAACCAGCACATGTCTTAGGCTAGAGCCCAG-GTTCCATTTTCCTACAGAGAGTCTCCGAAGTGCAAAAGAGAAACT---CAGTCATTCCTTCTTTACCCTTGCTCACACTAGTGTCATCTTTAAACCAGGGCCGCT----CTCAATTCCTTCCTGGCCCAACCCTGCTTTAGGAGAGCAGGCAGGCCAGGGGTGGGAAGCGGGGGGAGGGGGCGCCGTCTCAAAGCCCTGCTCTGT-----CTGACAGGCTTGGGCTGCCTGAGTGCCCTCCCTTCAGATCCACCTCCAGCAGGTG--CCCTCCCTCTTCTGTCTTCCA----CCTGGTGAGCCACCTGCCACCTGTGCATGTGTCTGCACTCCCTT--CTAGACTAGGACAGATGGACAATGAGCTCTCAACAGCAGAGTGCTCAGTAAACAGCTCCTGGACTTAAAAAACCTCCTACCTGg------ s mm3.chr5 117007939 523 - 149719773 CCCTCTTTCCAACAACTTAGCAGCAGACAAAGAGAATA-----AAGGA--CTCAACCAGTATCTAAATGGCA-TAATGATCCCGAGATTTATGTGGGACTAGCTTATATCTCAACCCCAAACATATGCTCCTATCTGTTTACAAGCTGTCT------TGCACAAACAACACTGGGCTGCCATTTCTCCTTTATTACTCTTCATATTAGT---ATCTTTAAAACAGAACCTTTGAAACCTAAAGCCGTTCTTGCTT-------CATCAGAAGCTCTAGAAAGGAAAAGGGGCTGGATCAGTGGCAGACATACCATCTCAACAACATGTCTGGTGCCCCCTGAGATAGGGTGGCCACTTG-GTATACCCATTTCAGGTCCATCTTCAGAAGATGTATCCCACTTGTCCTGCTATCCTCTGCCCTTATGAGCT-------ACCTGGATGTCTGTCTGTTCTCTACTGGACAGTTCTGGATGAAGAGAGAATGGGCACTGAATAATAACATGATTGATAAATGGCTGCTGGATCTGAAAGGCCTGGAAACTTTCTAAGG s rn2.chr14 78794978 503 + 107821284 TCCTCTTCCCAACAACTCAGCAGCAGGGAGGAAAAATA-----AAGGA--CTCAACCAGTATCTAAATGGCA-TAATGATCCTGGGGTTCACATGAGACCAGCTTGTATCTCAACCCCGAACACTT--------CTGTTTACAAACTGTCT------TGCACACACAACACTGGGCTGCCATTTCTCCTCTATTAGTCTTCATATCGGT---TTCTTTAAAACAGAACCTTTAAAACCTAAAGCTGTTCTTGCTTGG--CTTCATCAGAAGCTCTAGAAAAGAAAAAGGGCTGAATGAATA--------ACCATCTTAACAAAATGTCTGGTGTCCCCTGGTATACAGTGGCCATTTA-GTATACCCATTTCAGGTCCATCTCCAGAAGGTGTATCCCACTTATCCTGCTATCCGCTGCCCTTATGAGCT---------------GTCTGTCTGTCCTCTATGGGACAGTTCTGGATGAAGGGAGAATGGGCTCTGAATAACACCATGATT-ATAAATGGCTGCTGGATCTAAAAGCCCTGGTCACGTCCCAAGG a score=67090.000000 s hg15.chr4_random 909831 677 + 1219494 CCTCCTACCTGGGGTGCAGAGCC--TGG----TGACAGCCCGTGTGAGTGACAGCAGGTGTGCCCAGGCCAAGGAAAACTTGACCAACTGCTGCCACCACACC-------TCAGGCCCAGGAGGCCCAAGCCATCTGTGATGCCAACAGGTTTCCCATCCCTTCCGGAAAACCAGCAGCTAACACACAGGGGCTACCCACATGCGCCTCTGGGCCTCAGTCGGGAATTCCTGGCTTGCAGCTCAGGACAAAGCTAGTGACTTGGTGCTGCCTTCAACAGGGCCGTCTGAGGATGTGCGCGGGGTGCGGTGGTCCCGGGTGGCACTCACCTGCTCGTCGACATAGGCGTCGATCCTCTTCTGGCACTCCAGCCACTCCTCGGCGACTCTGCGCAGCTCCTCCTCGGAACGCTGGTACCTCTGCAGCAAGGTACTGTATGTGTCCTCACTGCAGGTGTCGTGTGTGGTGGTTCCTAGCCTAGGAGAGAGAAGGCCTTGTAACAAAGGAAAGAACCCAAAGGCTCTGAAGCAGAGATCAGAAATGT-GCTTCCTGCTGATACTATCCTGCTTTGTCATCTCGCCTCCCAACGTGGAAAACAGGGTGCCACTCTGCACCACAGCAGGGAGCTGTGAGGGATCAATAGATCCCCATGCAAGGCACCCAGGACAG----ACTTGTAAAAAGGAGATGCTCa s mm3.chr5 117008462 532 - 149719773 TCCTCT-ATCAGAACACAGAGACAGTGG----GTACAATCTTTTTGAG-GAC-------------------------------CTAATTGTTGCTGCCACACAATAATAGTCAGATT--AGAGG---------TCTGTGATGTTGTATAATTTTC---------------ACTAG-----GGCATAC------------CAAAAGCCCCTGA--------TGGGAGCTC------TGCAACTCAGACTGTAGCTAGCAACTTAGC----------ACATAGGCCCCAGA------ATGCAGGCTGTGCC--TCAAGGGCAGCATTTACCTGCTCATCCACATAGGCATCGATCCTCTTCTGACACTCCAGCCACTCCTCAGCAACTTTGCGCAACTCTTCCTCAGAACGCTGGTACCTCTGCAGCAAGGTGCTGTACATGTCTTCAGTGCAGGTGTCGTGTGTGGTGGTTCCTAGCCTAGGAGGGAGAAGGCC-TATCACAAAGG-AAGAGCTCAGAAGTTCCTGGCCAAACAAAAGAATCTTGGCTGCCTGTTGCTATTGTCTAACTTTATCACCTCCTGTCAC-------AAAACA-------------TACCACAGCAAG----TCTTAAAGATTA---------TGTACA---CACTCTGAACAGAACCACATATAAA------------- s rn2.chr14 78795481 534 + 107821284 TCCTCTTATGAAGATACATAGACAGTGGATGGGTATGACCTTATTGAG-GAC-------------------------------CTAATTGTTGCTACCACACAATAATAGTCAGATC--AGAGG---------TCTGTGCTATTGTCTAATTTTC---------------ACCAG-----AGCATAC------------CAAAAGCCTTTG---------CGGGGGCTC------TACAACTCAGACTACAGCTAGCAACTTAAC----------ACAGAGGCCCCAGA------GTACAGGCTATGCC--TCAAGGGCAGCATTTACCTGCTCATCCACATAGGCATCGATCCTCTTCTGACACTCCAGCCACTCCTCAGCAACTTTACGCAACTCTTCCTCAGAGCGCTGGTACCTCTGCAGCAAGGTGCTGTACATGTCTTCATTGCAGGTGTCATGTGTAGTGGTTCCTAGCCTAGGAGGGAGAAGGCC-TATCACAAAAG-AAGAGCCCAGAAGTTCCTGGCCAGACAGAAGAATCTTGGCTGCCTGTTGCTATTGTCTAACTTTATCACCTCCTGTCAC-------AAAACA-------------TACCACAGCAAG----TCTTAAAGATTA-----------TATA---CACTCTGAAAAGAACCACTTATAAA------------- a score=8898.000000 s hg15.chr4_random 910815 104 + 1219494 GGAGATGCTCAAAGA-AACAACAGCTTCTAA-GAAAAAAATGAGCACTGAACAACATGTCTCTAAAGACTATGACTTAACAATTCAGTTTACCAAATATGGAATTG s mm3.chr5 117008994 84 - 149719773 GGAGATGTTCAAATA-AATAACAGCACCTGCTGAAAGAAACTAGCAGGAATC-------CTAAAAATACTA--------------AGGTTACAACATATGGAGCTG s rn2.chr14 78796015 85 + 107821284 GGAGATGGTCAAATATATTAACAGCACCTGCTGAAAGAAATTAATGGGAATC-------CTGAAAATACTA--------------AGGCTACAACATATGGTGCTG a score=370.000000 s hg15.chr4_random 910919 125 + 1219494 CaaagaaaaaattaaaatagataaaaataaaaatgataaaaaaataaatatgggaatacaaaGTTATTTTACTCTTGAAAATACAACTGGCTCAGAGAAAACAAAACACTTAATGAGACATAAAA s mm3.chr5 117009078 64 - 149719773 T------------------------------------------------------ATACACATTT------CTTATTAATATAC-ACTGACCCAGAGAAAACAAAATGTTTAATGACAAATACAA a score=589.000000 s hg15.chr4_random 911945 15 + 1219494 GTATATATACACATA s mm3.chr5 117009154 15 - 149719773 GTACAATTATACACA a score=3112.000000 s hg15.chr4_random 911960 36 + 1219494 TATATTTTGAAATGGAAATATGCTCATG------------GTAACTAA s mm3.chr5 117009169 48 - 149719773 TATGTTTTGAAGTGGAAATATATTCATGCTTTAAAAAGGTATGACCAG s rn2.chr14 78796298 27 + 107821284 tgtgtTTTGAAGTGGAAATACATTCAG--------------------- a score=22596.000000 s hg15.chr4_random 911996 227 + 1219494 -----AGATATGACTACAGCATGTTTAAAAATACGTATAGTGGACATAGGGAAAAA--ATGTATAAGAAATACTAAATTATTTATAAAACCTAACTTTGTTTACGATTTTCTATATTTTCATAATTTTATTTGTAATGACAATCTAATGATTTTATAATA---------AACAAGCTATGTGGAAATTAGGATCTTTTCATGGGTGA-AATGGGCAGGAATGACTCCC----TCTTCTCCTCTGACCT s mm3.chr5 117009380 221 - 149719773 aTTG---TTATGACCAAAGCATGTCTAAAAATATGTTGTGCATAAATACCTAAAAA-TATGTGTAAGAAACACAAAGTTACTTACA----------CTGCCTGCCA----------CCTCATGATTCTATCTATA---ACAACCTAGTGATTTAATAATGAAAAAAAATAACAAAATCATTTTTAGTCAAAACAATTTCACAGGTAAGAATGAACAGAAATAGTTGCCAAAGTCTTTTCCTTTCACTT s rn2.chr14 78796495 221 + 107821284 attaaaaGTATGACCAAAGCATGTTTAAAAAT--GTTGGGCATAAACACAGGAAAAGTAGGTGTAAGAAACACAAAGTTGCTTACA------------GTTTACCA----------CTTCATGATTCTATCTGTA---ACAACCTAGTGATTTAATAATGAAACGaaataataaaataatttttaatcaaaaaaatttCACAGGTAATTCTGGACAGAAATAGTTGCCAAAGTCCTTTCCTTTCACTT a score=12399.000000 s hg15.chr4_random 912495 91 + 1219494 TGCAGCCCGTGAAGTAGTTTTTCTCCCACTTCTT--CTCTGCCAGCCTTGCTCTTCCGTGACTGGTTTCCATTCTTCACACAGAATCCAGCTT s mm3.chr5 117009740 93 - 149719773 TGCAGCCCTGAAAGAAGGTTTTCTGCTGATTCCTACTGCTGCCAGCCTTGTCCTTTATTGAACTGATTCTATTCTTCAATATAAATCCCAATT s rn2.chr14 78796854 93 + 107821284 TGCAGCCCTGAAAGAAAGTTTTCTGCTGATTCACACTGCTGCCAGCCCTGTCTTTTACTGAACTGATTCTATTCTTCAATATAAACCCCAATA a score=4050.000000 s hg15.chr4_random 912586 23 + 1219494 CTACCCAATTCCATCCTGCCCCT s mm3.chr5 117010180 23 - 149719773 CCATGAACTTCCATCCTGCCTTT s rn2.chr14 78797282 23 + 107821284 CCGTGAACTTCCATCCTGCCTTT a score=20496.000000 s hg15.chr4_random 913675 351 + 1219494 GTAATCAGTAGCAAAA-TTTTTATGAATTGTTAAATGCGTATCTGTACATTAGCAATGCAAATCTGAATTA-TCTTGAATTAGTCTCAGGCTGACAAGGGAGTCAGCTGCAGAGCACAAAGGCATGGCGTGTCCTGGCGTC-----GTCA-GTGCTGCTCAGGGAACGTGCTGGTTGGCCTCATTCTGTCCCTGTCTGTGTTTATCCTTCTCCCTCAACTGCCTGTGGGTCCCAAAAGTGAGAAGTGAGACTGCAGCTTGAGATCCAGCA-TCCACACTAGAGACGTGGCTC-ATGGTTGGAGTCTGACCATCATACCCAATGAGCAAACGGAAAATCCAGAACTAGGGCACAGAAAAAGA s mm3.chr5 117011754 300 - 149719773 GTAATTTATGGCAAAACTTTTTATGAGTTGCCAAATGTAGATCTGTACACTAAAAATTCAAGTATAAGCTATTCTTGGATT----------TGAAAAGTAAATCTGTGGTGAGACACAAAGGAACAGCATTTTCTGGACTC-----GACTAGAACTCTTTAGAAGGCATACTGCTT------------TCCCTCTTT---------CCTATACCTC-ATTTCCTAC---TCTTGAGAGTAATA----------------GGGAGTAAACACTCTAAACTAG-GATACTGTTACCTCTTTGGAATCTGACTGTAATTCCTAATGAGAA----TGATATTCTGAAAGTGGGAGCAGAAAAGAA s rn2.chr14 78798928 274 + 107821284 -------ATGGCAAAACTTTTTGTGAGTTGACAAATGTAGTTTTGTATACTGAAAGTTCAAGTATGAACTATTCTTGGGTT----------TAACAAGTAAGTCTACGGT----------GGAAGAGCATTTTCTGGACCAACGAGGACT-GGACTGCTTAGCAGGCATACTG----------------TCCCCTCT---------CCTGTACCTC--CTTCCTAC---TCCTGAGAGTAACA----------------GGGAGCGAACA--CTAAACTAG-GACACTATTA-CTCTTTGGAATCTGACTATCATTCCTACTGAGAA----GAATATTCTGAACATGGGAGC-----AGAA a score=8044.000000 s hg15.chr4_random 914491 41 + 1219494 CCTTTTCTTCTGCAAGGGTCAGAGTAAGGACTTTCCAATCT s mm3.chr5 117012216 41 - 149719773 CCTTTCCTGTCACAAGGGTCAGAGTCAGAAATTTCCATTGT s rn2.chr14 78799378 41 + 107821284 CCTTTCCTGCCACAAGGGTCAGAGTCAGAAATTCCCATTGT a score=23487.000000 s hg15.chr4_random 916527 405 + 1219494 CCACAGGGCAAACACATGCCCAGCCTAAATCTTCTCACTCTGAC--------CCCGAGCAAATACTCAGTGAGTGACTGCTGCAC-TCTGCACCCCTTTTTCTCAGTGAAAGCATAGA--ACCCAGCCAGCTTCCCAAGCGTGAAGAAGCCACATGGATGCGCTACACCAGGAGACAGAGCAACAGAGCCTCGGGTAGCAACGGAATGTGTGGGAAACACCAAGCTGTATCCGGAGGGCCTTGGGCACCCTCAGACCTGGGCCTCTTCCCTCCTCCATTTCCCCTACATGTCCAAGAGCCATAGCATGAACCACACCACAGCTGCCCGGCCAAGGATAGGTCTTGTCAAGGAAAAGTGCTATATTTACTGTAGCTTTTC----TGTATGAG--GAATTTGTGGTGTTAAATCTTA----GTAGCAT----- s mm3.chr5 117013242 377 - 149719773 CTGCAGGACAAACATATGCTCATACTTCACA--CTCCATTTAGCATAGTTCTCCCCAAAAGAGGCCCATTCAA-GAGTTCTGTACTTATGTGC----TTGTCTTGGTAACAGTAGAGACTCTCTCACCGGCTCTCC---TGTTGAGAAGTGACATAGGCAGTGTATACTAGGATA-----------AACCTA-----GAAAAGGCATTTCTAG----TGCCTAATT---CCAGGGGAGTCTAAGGTACTCTGAGACCCATG--TTCTTCCTCCTCCTCTACCTCCTACAACCTAAGAACCCTACCAGGATCCA---------TGACTGAACCAAGA-----CCTGTCAAGGTAAA--GCAATGTGTGCCAAAGCCTTTATTCATTTATCAG--GTA-TTATGGTGTTACGTTTTATATGGTATTATGGTTT s rn2.chr14 78800220 368 + 107821284 -CACAGGACAAACAAACGCCCATACTTCATA-ACTCCATTTGACATAGTTCACCCCAAAGGAGGCCCACTAGA-GAGTTCCCTATGTGTGTAC----TTGTCTTGGTAACAGTAGAGACTCTCTCATCAACTTTCC---TGCTGAGAAGTGACATAGGCACTCTATACTAGGACA-----------AACCTAGAT--GAAAAGGCATTCCTA-----TGC---------CCAGGGGAGTCTAAGGTACTCTGAGAGCCATG--TTCTTCTTCCTCTTGT--CTCCCTTTACC-----ACCATACTAGAATCCA---------TGACTAGACCAAGA-----CCTATCAAGGTAAA--GCAATGTTTGCCAGAGCCTTTTTTCATTTATGAGGTGTA-CTGTGGTACTATGTTTTATATGGTAGAATGtttt a score=1785.000000 s hg15.chr4_random 916934 16 + 1219494 ATATTGACTTATCATT s mm3.chr5 117013622 16 - 149719773 ATTTAAAATTTCAATT s rn2.chr14 78800726 16 + 107821284 ATTTAAAATTTCAATT a score=71367.000000 s hg15.chr4_random 916950 628 + 1219494 TAAA--AGTTTAATTGTATTGCTTCTCAGGTTTTGAGCTTTTGGCCCAAACTATCTTTTTCTTTAAGCCCTGTTATTTTTCCTGCAAGAACTTTCATACT-CAGTGGTACTCG--GGTACACGCACACCAGTCAGGAGAAAAGACTGTGCTGTCACACCACAAAGACACATACGGGTTAAGGCAAAATACCTGATCTGTGACACCAGTGCGGGCAAGTTGCTCTGAAGAAGTGGCTCCGAAAAGACCAGATTTTCAAACAGGTGTTTATTATGCAGTTCCCACGTCACTTGGAACTTTTTCAAGTGTTCATTTTCCTGGTTA--AGAAAAAGTAAAAGATAA--------ACAGAAG-ATGTAGTGAATTGCTAAAGACTAGAAAATTCCCAGAGGGATTCCCTCCCCCCTCCCCATTTCCCCCCACCACGCACACATCCCTCTTCACAGGCCCAGAGTGTTCAGCTTATG-AGAAGTGCTGCTCCCTGTATGTCTCAAGGCACACAGTGCATCAGAACTCTGACTACACGGACATGGATTTCAGCACATCTCCCCTCTAAAATGGCAAGTTTAGAAGGGCTGCAA----AGACA-GGGTGACAGGTGTGCACAGAGACAAAGCAGTAACTGCACGTTTGAGA------GTCATTT s mm3.chr5 117013852 605 - 149719773 TAAA--AGTTTAGTTGTATTGTATCTCAGGGTCTGAGCTTTCTGTTC--ACTGTCTTTTTTCCTATGCCCTGTTATTTTTCCTATAAGGACTTCCATGTGGTAGTGATCTATATAGCCACATGCACAT--------ACACAAGATT----------ACAGCAATAGAGAATCTAAGTCAAGACAAAATACCTGATCTGAGACACCAGTGCTGGCAAGTTGCTCTGGAGAAGTGGCTCTGAAAAGACCAGATTTTCAAATAGATGTTTGTTATGCAGTTCCCATGTCACCTGGAACTTTTTCAAATGTTCATTTTCCTAGTTTAAAAAAACAACAGCAACAAAAAAGAACAACAGAAGAATGTAGTGAGTGGATGAAAC--TGAAACTTTGCTGAATGATCCCCCCTCACC----AATGTACTGCCACCG------------TCTACACAGGCCTAGAACATCCTGCTTCTGATGAGTCACTGCTCCCTGCTGGGATCAAAACACAT--CAAACCAGATCACTAACATAAGCAATATGGGTTACTACCTCACTGCCTTCTAA----GTAACTCGTACCCACCCCCAACCCTAGACATGGGTGGCAGGTGCGTTCAGAGATTTAAAAATGACAGAA-----GAAAAAACAAAACACAT s rn2.chr14 78800953 553 + 107821284 taaaCAAGTTTGGTTGTATTATATCTTAGAGTTTGAACTGTCTGTCC--ACTGTCTTTTTCCTTATGCCCTGTTATTTCCCCTATAAGGACTTCCATGTG-TGATGATCTATA--GCCACGTGCACAT--------ACACAAGATT----------ACAGCAATAGAGAATCCAAGTCAAGACAAAATACCTGATCTGAGACACCAGTGCTGGCAAGTTGCTCTGGAGTAGTGGCTCTGAAAAGACCAGATTTTCAAACAGATGTTTGTTATGCAGTTCCCATGTCACCTGGAACTTTTTCAAATGTTCATTTTCCTAGTTT--AAAAACAATAACAACAAA----GATAACAGAAG-ATATAGTGAGTAGATGAAACTATGAAACTTTCCAGAAGCATCTTCCCACCCCT---AATGTCCTACCACCT------------TCTACACAGGCCTAGAACATCCTGCCTGTG------------------------TCAAAACCCAC--CAAACCAGATCACTAACATGAGCAA----------CACCTCACTGCCTTCTAA----GTAACCGCTATCCACCCCCAACCCTAGACATGAGTGGCAGGCAGGTTCAGAGATTTAAAAATGACAGAA-----GGAg------------- a score=11043.000000 s hg15.chr4_random 917578 248 + 1219494 CTCACAATTAT-------GCTTTTAAAATGTAATGAAAGCCCTTACAGTTCAAACAGTTTAGATACATCAAGTCCCTCGATGCTAAAG--------GATAAC------AATTTTCTTACCT------ATTTGGAGAA------ACCTTCCATTCTAATTAATACACACAATTTCTCCACTTGCAAGACCCTATCAGAGTTAAGGTTTTTTGTCTTCCTAATAAATGTAGGCAAACTTGTCAATTACTTTAGATA--ATACCACGAAAACCTAGAAGTGTCCCA s mm3.chr5 117014582 273 - 149719773 cACACAGATATATAAAACATTTTTAAAAAGAAA--AACGTA--TG-AGTCAGGACAAT----ACTCTTCTTGCCTGTCTTTGTGAAAGCTCATTCTGATAGCTGCAGATATATTCTCCACTGGGGACACTCAGACAACACAAGGGCTTTTATTCTGATAGCTGCAGATATATTCTCCACTGGGGACACTCAGACA-ACACAAGGGCTTTTATTTTCCTAAGACACATGAACAGGCTCCTCAGGTGCTATAGACAGCAGACTGCAAGCCCGCAGCAGTGCCACA s rn2.chr14 78801627 215 + 107821284 CACACAAATATATAAAACACTTTTAAAGAGAAA--AATGTATTTG-GGTCAGATCAAT----ACTTTTCTTGCCTCTCTTTGTGAAAGCTCATTCTGATAGCTGTACATACATTCTCCACTGGGGACACTCAGACAA---------------------------------------------GGA---------------AAGGGCTTTTATTCTCCTAGGAACCACAAGCAAGCTCACCA-GTGCTATAGACAGCAGACTGCAAGCCCGCAGCACTGCCATT a score=23969.000000 s hg15.chr4_random 922814 263 + 1219494 ccaaggccacgagagctgcagatccctgctg--tccctttcggtgctcggagtttccacttcaaccttactagtgtcgtcacttacagtcccagcattatgtgcagaccccatcctgggctaggttgtctcttg-tctcc----caggatcagaagaaatacccacagcaaatgctgactttcaagcccatgtatttctcaggattccggctttcaattggtttttcaccactacgacttactccctttcatgccatctcagccatacac s mm3.chr5 117015895 239 - 149719773 CCAGGGTCATGATAAAC--AATTC----CTGTTCTCCTTCCAGTGCTTGG---------------------ATTGCAGTCACTTATGGGCCCTGCACTTCAAGCAGACTCCATGCTGGACTAGACTGAGACTTTAATTCCGTATCAGGGCCAGAAGGAATCCTTGGGACCAATATTAATTTGAGCACACATG---TTCTCAGGGTTCTAATTTTCAACCAAGTTTTGAACACTAGGTCTTTTCCCCCTTTATGCCTTCTCAGCAA-AGAC s rn2.chr14 78802968 235 + 107821284 CAAGGGTCATGATAAACATAGCTC----CTG--CTCTGTCCAGTACTTGG---------------------GTGGCATTCACTTATGGGCCCTGCACTTACAGCTGACTCCACCCTGGAC--GACTGAGACTTC-ACTCCGTATCGGGACTAGAAGGAATCCTTGGGACCAATGTTGATTTGAGCAGACATG---TTCCCAGGGTGCCAATTTTCAACCACG-TTTGACCACTAGGTCTTTTTCCCTTTTATGCCTTCTCAGCTA-AGAC a score=1024.000000 s hg15.chr4_random 923385 33 + 1219494 tatttttttattatctagtaaattcagttgttt s mm3.chr5 117016342 29 - 149719773 TATTTTCTT-TTAT---ATAAATTTACTTGTTC a score=4474.000000 s hg15.chr4_random 923418 149 + 1219494 cccttggaggaaggaatagttaagggtatctagtctgcTGGACCCCTAGAAATCAATGTGGGTATTTCTATGTGTAAAGGAAGTGAAAAAAGACACTAATCAAACAGCTTCTGGGTGTATGCATTTTTTTCAAGCCACAAGAAATTATt s mm3.chr5 117016371 96 - 149719773 CCTT--GAAGAAGAAATACAAAAGAATATGTAACCTAT---GCCATGCATAATCAAAAGTAATATTCCTA---------------------------------------------TATCTGCATTTTGTGGAAGTTTTAACGG---GAT s rn2.chr14 78803243 96 + 107821284 CCTT--GAAGAACAAATACAACAGACTATGTAAACTAT---GCCACATATAATCAAAAGTAATATTCTTA---------------------------------------------TATCTACATTTTGTTCAAGTTTTAACTG---GGT a score=6373.000000 s hg15.chr4_random 923879 27 + 1219494 TCAAGCCACAAGAAATTATTTCTATGT s mm3.chr5 117016467 27 - 149719773 TCAAACCACAAGAAAATATTTCTATAT s rn2.chr14 78803339 27 + 107821284 TCAAACCACAAGAAAATATTTCTACAT a score=8236.000000 s hg15.chr4_random 923939 82 + 1219494 TCAAATTAATTTTTGTCAGCTTCATAAAACAGTATCCTACAGTAACTATCTGAGGAGGTGCAGACCTCGCCAGCATTTTCTG s mm3.chr5 117017558 71 - 149719773 tCAAGTAGAACTCTGCTAATTTTGTAAAATGGAGTC-----------ATGTGAGGATGGCTAGACATCAACAGCACTTTCTG s rn2.chr14 78804591 69 + 107821284 TCAGGTAAAACTCTGCTA--TTTCTAAGATGGAGTC-----------ATCTGAGGATGGCTAGACATCAAAAGCACTTTCTA a score=15972.000000 s hg15.chr4_random 924021 411 + 1219494 GAGAGCAGCAACAGCTGCTGTCTTCACTACCAGAGTCTCTCTGGGCACCAGGTTTAGGTGGGCTGGAGAGCATCCTT-CTTAACCTGAGCCAATGTTCTTGTAGAAGACAGAGGAGGGGCTCTGGATTTGAACCTCTGAAGGGCAGGCAGACTCTCAGGTAGAGACGGGGAG-----GCTGTGCTGCGAGAGATGCCAGAGGAAGGACGAGGTACCAGAAGGAAGCCTGGTGGCACTACCCAGTGGACTCAGACCTTGAAACAGGATAACT---GCCCCCCTGCCCCACCCCCACCCCTCACCCTACCCATTCACCTCGC--TACCTCTTCTCAGAATAGATACCTCCCCATGGCTTGGCGCAGTGAAGCTTGAGGAAGTC-------TGTGAACCCCCTGAAATGACTTACAATTACATGTATGTAAt s mm3.chr5 117017629 311 - 149719773 GAGTGT---------------------------------------------------------------GCATTTTT-AACAACCTAGGCTGGTACTCTCCAGAGAGATGGAGCAGCAGCTCTAAAACTAAGTCT----AGAATTGGTCAAGTCCCAAGTTGAGGTGGAGGAGG---GCTAAACTGTACAAGATTT-------ACAAAGAGGTG-TATAGGTCAACT-----GCAAGTACCAGGGCCCTCACACC------CAGCTTGCCTTA-GTCACTTCAGCCAA---------TTTTCACTAACCATATGTCTCAC-ATTCCTCTTATTGGAAGTAATAACCTGGCACGG--TGGCAGAATGAGA---AAGGAAAATTGGACAGTGTAGGGCTGTTGCAATTTCTTGCCA------------AAT s rn2.chr14 78805517 317 + 107821284 GAGTGT---------------------------------------------------------------GCATTTTTTAACAACCTAGACTGGTACTCTCCAGAGAGATGGAGCAGTGGCCCTCAAACCAAGTCT----AGAATTGGCCATGTCCCAAGTTGAAGTGGAGGAGGAGGGCTAAACTGTACAAGATTT-------ACAAAGAGGTG-CACAGGTGAACT-----GCAACTACCACAGCCCTCACATT------CAGATTGCCTTAAGTCACTTCGGCCAA---------TTTTCCCTAACCATGTATCTCACCACTCCTCTTACTGGAAGTAATTACTTGGCATGA--TGACAGACTGAAG---AAGGAAAACTGGACAGTGTAGGGTTGTTGCAATGTACTGTGA------------AAC a score=16004.000000 s hg15.chr4_random 924709 118 + 1219494 GCTG-TATGTAAATTTTTCTAAGAG--------GGTCCATCAACTTGAGAATCAGATAAAGACCAAGGCCAATGCTTACTGTATTTGTTTCAAAATGTAGGTTTACCACTAAGAAAGCACCCAAAAC s mm3.chr5 117017940 119 - 149719773 GATGTTATGTGAACTTTTCT-GGAGTTAACATTAGACCATAAACATCAGAGTCAGATAAATA-----AGCAATGGTTTCTGCATTGTTCCCAAAACATAGC--TACCACTAAGAAAGCAACAAAACC s rn2.chr14 78805834 119 + 107821284 AGTATTATGTGAACTTTTCT-GGAGTTAACATTAGACCATTAACATCAGCACCAGATAAAGA-----ACCAATGGTTTCTGCATTTTTCCCAAAACATAGG--TATCACTAAGAAAGCAACAAAACC a score=67999.000000 s hg15.chr4_random 925817 612 + 1219494 TCTCTTACCAGAGTGCCAAGGAAGGTGCTGATGGAGCGTGCGGCCTGGCAGAGGGCGCCGTACTCCTCAAGCAGGAGGGAGATGAACTGGTGCGCTTGCGGCGGGCCCTGCAGGCCAGATGGTGCCTTCACCTTGGCCGCAGCCGACAGCTGCCGGAGCAGGCGGACCTTCATCTCCAGCACATACTCTCGAGCTTGCTGTTCCAGACGCTGGTACAGCTGGTAGGGGTCCCTCTCGCAGAGCCTGCACAGAGA---AGAGGGTCACCAGGGCCTGCCCACCAGGGCCCATGGGTGCTCTGATGTCAGTGAGCATCTTTTCTGAAGCCCTTCCACAGGTGGCCACCTCTAGATGACCACACAGTCACCTtcctcataaccacctgtgagaagcaca--------atcaccccacctaatggat--------ggggaatccggggcacagagTGTCACTAGGGaacagcaagtgacatttattgagctttctctatacagcactgtccgtgcacgtgcactaattcagttcgctgtgtgtgggttcagtgcctgctttaca-gaggggacattttggcccacacaggttgggtgacttgcgtaaactcacacagctggaagagcacgctacca s mm3.chr5 117018770 536 - 149719773 tCTCTCACCAGAGTGCCAAGAAAGGTACTGATGGATCGTGCTGCCTGGCAAAGGGCAGCATACTCCTCCAGGAGTAGGGAGACAAAGTGGTGTGCCTGAGGTGGGCCCTGCAAGCCAGACGGTGCCTTGGCCTTGGCTGCAGCAGAGAGCTGCCGAAGCAGGCGGACCTTCATCTCCAGCACATATTCCCGGGCTTGTTGCTCCAACCGCTGGTAGAGCTGATAGGGGTCCCGCTCACAGAGCCTGTAGAGACACAGAAAGAATCACCA---CTTAGCCA-------TGATTTGTCCACACATGTCAGTTAACA-------GGCAGTTTTCCTGTCAGT-GTCAC-------TGACAATCCACT-GTCTTTCTTGTGACAACCTATGGG---------------ATTTGTGCACCTAGAGCATTTGATGCCAGGTAACTCAT---AGACACTGACATGA-----CCCCAAATG-------------CTTCCTAGGACTGCACTGTTTATGCA-----------------------ACCTGTACTCCATACCTACAGTCCATGAAAAAAGATCTTAGTCCATCT---CTGAGGAAGGTATTATAACTCACA-------AATAAGA-GTAAAAG s rn2.chr14 78806645 552 + 107821284 TCTCTCACCAGAGTGCCAAGAAAGGTACTGATGGATCGTGCAGCCTGACAGAGGGCACCATACTCTTCCAGGAGTAGGGAGACAAAGTGGTGTGCTTGTGGTGGGCCTTGCAAGCCGGATGGTGCCTTGGCCTTTGCTGCAGCAGACAGCTGCCGGAGCAGACGAACCTTCATTTCTAGCACATATTCCCGGGCTTGTTGCTCCAACCTCTGGTAGAGCTGATAGGGATCCCGCTCACAGAGCCTATAGAGACAAAGAAAGAGTCACTA---CTTAGCCA-------TAATCTTTCCACACATGTCAATTGACA-------AGCAGTTTTCATATCAGT-GCCAC-------TGACAGTACACT-GTCTTCCTTG-AACAACCTGTGGGAGTCACTGATTAAGAACTTGTGCACCTATAGCATTTGATGCTAGGTAACTCACAG-AGACAATGACATGA------CACAAATG-------------CTTCCTAGGACCGCACTGTTTATGCA-----------------------ACCTGTGCTCCATGCCTATAGTCCGTGAGAAAAGATTTCAGCCCATCT---CTGTGGAAGGTACCATAACTCACA-------ACCAGGAGGTAAAAG a score=33472.000000 s hg15.chr4_random 926430 417 + 1219494 ttctcagcagctggccccagacaacatgctcAGACACGAGGCTGGGGACAACTCTTTTAAAGGCTTATATGTTAACAAGTAAAAAGCACTGATCCCAGGAGAGGTGCCACCTGGCTGCAGATCTGCGGCAGCCTGCTCTTTCCTTCTTTCTAGAAGTTCA-GTGTACAATCCAAATGGGTTTGTATTAGGCTTATCAAAAGAGGAAACTTTAGACACAGTTTATCTTTTTTTTTAACAATTATCCCACCAAAAAAGCAATAAAGGTGTGTAAAATAAAATTTGTAGGCTGAAGAGTAGGAAAAAAAAAATACATGCAACATGACTAAGCCACAAATGCAATGAGCA----------------------------TTTTCATGAATTTC--AGG---CCAAACTTTGGGATAATCCATTATTTTTG---------ACACAAATGTGTATGATA-ATCCACAt s mm3.chr5 117019307 384 - 149719773 TGCCTGAGAATTGACCCTAG-----GTGCTAA-----------------------TCCAATGACTGA---ATTAGAAAGTGACAAGCCCCAATCCCAGCAGAGATGATACGTGGCTGAAGGGCTGGGGCCAAGTTTACCTTCCTTCTTTCTAGAAACTCAAGTGTATCATACAAATGAGCCTGTGTCATTTTCATAATTAGAAAAAGTGTTAGATACAGGTTACCCCATTTTTAAATTAT--------CAACAAAGTGATGAA-ATGCATAAAATACAA-TGAAATGCTTAAAAGCAGG-GGAAATATATCCCTGCAGC------CATCCATGATTGTAATTAATGTCCAAA----------------------TTTTGAGAAACTGT--AAGTTACCATCCTGAAAAAGAAAACTTTCTTCCTCAGCCTCCTGATGC-----TGCATTATAGGTTCATGC s rn2.chr14 78807327 399 + 107821284 TGCCTGAGAGCTGACCCCAG-----GTGCTAA-----------------------CCCAATGAGTGA---ATTAGAAAGTGACAAGTTCCAATCCCAGCAGAGGTGACACCTGGCTGGAGGGCTGGGGCCAAGTTCACCTTCCTTGTTTGTAGAAACTCATTTGCTTCATACAAATGAGGCTCGGTTATTTTCAAAATTAGAAAAAGTATTAGATACAGGTTATCCCATTTTTAAATTAT--------CAACAAAGCAATAAA-ATGCATAAACTACAA-TGAAATGCTTAAAGGCAGG-GGAAATGTACCCCTCAAAC------TATCCACAATGGTAATTAACATCCAAATTTACACGTGACTCTTTTATAGTTTTGAGAAACTATAAAAGTTACCATCCTGAGAAAGAAAACTTTCTTCCTC---------ATGC-----TGCATTATAGGTTCACAC a score=10681.000000 s hg15.chr4_random 927144 79 + 1219494 GATAATGCACATTTTAAAACGTATTCTACAGTACTGGCATTGCTATGGTTAAATTTAATTGTATTTTAA----------TCCAGGA-GCC s mm3.chr5 117019696 89 - 149719773 GATGATCCAGATTTTAAAACTTGCTCTATAGTAC-GGTATTGTTATGATTAAAGTTGCTACTTCTTTAAAGGGTACACTTCTGAGATGCC s rn2.chr14 78807731 89 + 107821284 GATGATCCCGTTTTTAAAACTTTCTCTATAGTAT-GGTAATACTATGATTAAAGTTGTCACTTCTTTAAAAGGTACATTTCTGAGATGCC a score=20551.000000 s hg15.chr4_random 927223 196 + 1219494 TCTAGATGGAAACCTAAAACCACTGATGTAATAATAAAAATTCGT-CCATAACCCAT---CACCAGGAGAAACCAGTTTGAGTTCA-TCACTCTAACAGAAATGAGTTGTAAAATGTATTAAACTACAGCTCCTGGATTTTACA-TAGTAAATCCTTTCACCTAC---ATACCATATTATGTC-AAAAGAAAAGAA---AGTTGTCACC s mm3.chr5 117020016 196 - 149719773 TCTAGATGGAAGCATAAAGCCACTGAAGCAATAACTAAAACATATACTGGAATGTGT---CACTATGAAAAAACAG-CTGAGCTAAGTGGCTGTTAC--AAACCAGGTGTAGAATATACTAAACTA-------TGAATTTTACATTAATAGATTCTTACATCTTTTGGTTACCACATTAAATCTTTAAGAAAAGAGGATAGTCGTTACC s rn2.chr14 78808045 196 + 107821284 TCTAGATGGAAGCATAACACCACTGAAGCAATAACC-AAACATGTACTGGGATGTGTCACCACTATGAAAAACCAG-CTGAGCTCAGTGGCTGTTAC--AAATCAGGTATAGAATGCATTAAGCTG-------TAAGTTTTACA-TGGCAGATTCTTCAGTCTTTTGGCCACTACATTAAATC-TTAAGAAAGGAGAATAGTTATTAGT a score=4627.000000 s hg15.chr4_random 927419 30 + 1219494 TGTTCTATTTTTAAATTGCCATATTACCTA s mm3.chr5 117020708 30 - 149719773 TGTTCCCTTTCTAAAGTTAAACATTACTAA s rn2.chr14 78808658 30 + 107821284 TGTTCCCTTTCTAAAGTTACACATCACTTA a score=18724.000000 s hg15.chr4_random 927449 165 + 1219494 GGCTATAAAAGACAAGTGCCAA-GTAAAATCT-------------------------------------TGCAATGGAACATGTGAAGCCTTATGGAAAATGTG------------------------------------GATTAAAAAAATAGTGTAGATGGATGGGATTCCTATTATGGTTAGTATATTTCAGACAGA--CATTAATTTTTTGAGCATGACAACT--GTCATTTCAACTAC s mm3.chr5 117020942 238 - 149719773 aGTTGTAAAAGATAAGAATCAAGGTAAAATTTGCAAAGTCGTATAGAAAGTATGTAGCTATATAAAATCTGCAAAATAGTATGTAAAGTCTTATATA-AATGTGCAAGGTAATAAATATGTAAAGCCAAGTCTACAATGTGCTTAGAGAAA----ATAAATGGGTAGGGTTGTTAACGTGGCTGCTACATTTCAAAAAGATGTATTAATTTTTATAACATTAAAATTTAGTGGATTCCCCCTC s rn2.chr14 78808688 227 + 107821284 AGTTGCAAAAGATAAGAATCAAGGTAAAATGTGCAAAGACATATAGAAAGTATGTGTCTATATACAATCTGCAAAATAGTATGTAAAGCCTTGTATACAATGTGCAAGGTAATAAATATATAAAGCCAAGTCTACAGTGTGCTTAGAGAAA----ATAAAT-------ATTGTTGACTTGGCTGTTACATTTCAAAAAGATGTATTAATTTTTGTAACATTAAAATTTAGTGAGTTTT----- a score=10489.000000 s hg15.chr4_random 927623 97 + 1219494 AAACTGTCCTCTGAAACAGAATGCATTTCATCTATTAAAATAAAGCCACAGAAGGTCAAATTTTGACAGAGACAACCAAACTTAGAAGCAGACTGGA s mm3.chr5 117021381 94 - 149719773 cAACAATTTT---AAGCAGAATGTGTTCTATACGTTTAAGGACAGTAACATAAAATTCAAATGAGCATGGGACAATTGAACTTACAAGAACACTAGA s rn2.chr14 78809080 90 + 107821284 cAACAATTTT---AAGCAGAATGTGT----TATGTTTAAGGACAGTGACATAAAATTCAAATGAGTAAGGAACAATTGAACTCAGAAGAACACTAGA a score=14502.000000 s hg15.chr4_random 927756 108 + 1219494 --------------------GATCtc--------tttttt----------------------------ttttttgtctatttctgtattttataaatttaaggaaataaccatgtgatacttttgcaaacagaTTTTTTTTTAAGTTATATAAAAAGAAGGCAG s mm3.chr5 117022746 150 - 149719773 GAAAAAGGAAGTCTCAAGGACACCTCCTTATAGTTTTTTTCAGTGCTGTAAAATTAGAAGCATTTTGATTCTTTGTTCATTTCCACATTTTATAAATTTAAGGAAGAAACTATGTGACATCTTTGAGAACAGA--TTTTTTTAATTTATAAT------------ s rn2.chr14 78811893 148 + 107821284 gagggagggaggCCCACAGACACCTC-TTACAGTTTTTTTCAGTGCTGTGAAATTAGAAGCATTTTGATTCTTTGTCCATTTCCACACTTTATAAATTTAAGGAAGAAACTATATGATACTTTAGAGAACAAA---TTTTTTAAtttatatt------------ a score=1996.000000 s hg15.chr4_random 928140 134 + 1219494 GAGAGAGACAGCAATATGCTGAAGAAGCTAGGAAGCTCATT---CGCTAACTCACACACACAT-TCAACAGATGCGGG------CACATCAACTACACACTGGCTGCTACTCTAAAGTACTGAAGTTGCAATGTTAATAAGCTG s mm3.chr5 117023069 119 - 149719773 CAAACATAC----TTATGTGAAA-AGACAATGCAAGTAGTTTA-CAATCAATCAATCACAAGTGTTGATAGGTGCTGA------------------GTGCTGACAG-TATTCTAAAGCATCACAGATGTAGCATTAAGGATCTG s rn2.chr14 78812210 131 + 107821284 TGAACA-----------GTGAAAGAGACAGTGCACGTAGTTCAGCACTTAATCATGCACAGGTGTTGAT-GGCGCTGCTCCACCCGGGTGACATCTGTGGTGACGG-TGTTCTAGAGCGTCCCAGATGTAGCATGAAGAATCTG a score=220.000000 s hg15.chr4_random 928282 28 + 1219494 TGGGTTTGACGTGAAGGTTATACATTTT s mm3.chr5 117023317 24 - 149719773 aGGATCTG----GGATGTCATGGGTTTC a score=3057.000000 s hg15.chr4_random 928310 23 + 1219494 TTCCTAATACTCACTAGGAAACC s mm3.chr5 117023341 22 - 149719773 -ATGTGTCACTAACTAGGAAATC s rn2.chr14 78812343 22 + 107821284 -ATGTGTCACTGACTGGGAAATC a score=10314.000000 s hg15.chr4_random 928633 178 + 1219494 ACTTCTAATAAAAGCACATACCACAGAGAGGGACCTCATGCAATACC-AGTGGCTCACAGGTCAAACCCTGAAAATACTTGGCTGAATTCAATGAGTTAACCTAATCTATGGCTAATCACTATCCCTGCCTCCAGGAAAGAATCTACTGCACAGCAAACATCAGTTTATAAAACTCCTg s mm3.chr5 117023363 139 - 149719773 AATTCTTAAAAAGGCACTT-CTATCTGGAACTGTCTTACATAACACTAAGTAGATAGGAGGTCAAATCAGGAACA--------------CAATGCTTT-------------GTAAATCAATGCCTCTGCTTCTTTGGCATAATCT-----ATGGCAAATGTGACTTCATAAG------- s rn2.chr14 78812365 140 + 107821284 TCTCCTTACAAAGGCACTTATTACCTGGAAGTATCTCAAATAACACTAAGTCGGTCTCAGGTCAAATCTGGAACA--------------CAATGCTTT-------------GCAAATCAACTTCCCTGCTTTTTTGTCATAATCA-----ATGGCAAATGTGACTTCCTAAG------- a score=11620.000000 s hg15.chr4_random 929418 127 + 1219494 GCCTCCCAAATGTGCTGCATTCAAAATGTGAGAAAGAAACCCAAA------------------TGAGAATCAACCCATGAAATGGCCATCTCAAATAAGTTGCTTTCATTTGAAACATTTCAAAAAACATAAAAATATGTTATGT s mm3.chr5 117023504 115 - 149719773 ---GCCAAAGTA---TGTAATCAAAATATGAGAAAAAAA------------------------TGAGAATCGATCCATGATATATGCAGCTCAGATTTTTTGCTTTTATTTGGAACACTTCTAAAATTGGGAAAAGATGGCACAC s rn2.chr14 78812507 134 + 107821284 ---GCCAAAATG---TATAATcaaaacataagaaaagaaaagaaaacaaaacaaaacaaaacaTGAGAACTGATCCATGAGATATCCAGCTCAGATTTTT-GCTTTTAGTTGAAACATTTC---AATCGGGGAA-GATGGCACAC a score=32818.000000 s hg15.chr4_random 929840 376 + 1219494 TCAAACTATAAGGAAGAATAAAAATTATGGCCACCTCAAATTCTGTGTGGTTACTGAGCATAAGGTATCTGCTGAAGAACGGCTGCGGCATCATGAGAAACAGCCACACGGCCAGGCACGCCT--------CAGCTGTCTTG-GCCTCATGAACCACAGGCACATACAcaagctacccaacctcac-agagcccccattttttcacttcataaatgggctaactcggcctttctccttgggttgataaaggcaagagtgcttgtaaaagtactctgcatcatccctggcacag-ggggactcaaaaa---ggaaggtattattat--CA------------GTCTTCACACAAACAAGTGACAGAAACATTTCTTGTGTAATTATACAGGCAATAGCGTTTCAT s mm3.chr5 117023619 345 - 149719773 TTAAGTTGTAAGGAAAAGCAGAAGTGATGCTCACCTCACTTTCTGT-CAGTCACTGGGCACAGGGAGCCCGCTGAAGGGCAGATGCTGGGT----AGAAA---------------GCACTCCCTGTGAGAACAGCTGCTATGCACCTCATGGA--GCAAGTGCCTTCACAAGCTGTTCAATCTCAGGAGTGC---------TTCA----GTGGACAGGAGCACTCTGCCTTTCTCCCTGAGTT-ACAAA------AGTGCTTATACAAATATCTAATACCAG--CTGGTATAGCAAGAACTCTAGCATCTTGGTTGTGCTAATAT--GACAAATGCCATATGTCTTAAGATA------TGACAGAAGCATTTC-------AGTTTACAAACAGGAGAACCCAGA s rn2.chr14 78812641 348 + 107821284 TTAGGT---GTGGGAAACCAGA-GTGACGCCTGCCTCACTTTCTGT-CAGCCACTGGGCACAGGGAGCCTGCTGAACAACAGATGCTGGGT----AGAAA---------------GCGCTCCCTGTGAGAACAGCTGCTGTGCACCTCATGGA--GCAGGTGCCTTCACAAGCTACTCAATCTCAG-AGTGC---------TTCA----GTGGACAGGAGCACTCTGCCTTTCTCCCTGAATT-ACAAATGCAAAAATGCTTATAAAAATATCCAACATCAG--CTGGCATAGTAAGAACTCTGGCATCTTGGTTGTGCTAATATATGATACATGCCGTATGTCTTAATATA------TGACAGAAACATTTC-------AGTTTAGAAACAGAAGAACCCAgc a score=55146.000000 s hg15.chr4_random 930216 755 + 1219494 -----------------------------------------------------------------------CAAAATCA--------GAAAAATTCAAGACGTTTGACCTAGGGGGCTCACTTTTGCCAGTTCATCTGCTGCAGTCTTGACAGGCACCAAAGGCTAAGCAAACCCAGCTGAGCACTG--TAAGGAAAGCCCATCCTGAAAGGAGTGGCTCCAAGTGCAGCAGGGAGGGCAGGGGTTTGCATGGGGCCACAACAGGAAAGGGCAGTATGTACCTATCCACGAGCTCCTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCTCTGTGAGACAACACAGGAAGGTTAGAAAGTCACCACAATCTGCTGCCCTTCCTCACCTAGCACACTGTCCTCAGAGGACCTCCCAGGCTCTTGCACCTTGCCCAGCTCCCAGGAGCCGGCAATCAGGCTGCTGTCAGTGCAGGGGGGTGATGGCATCCCCAGCACAGCTCCTAGGGTGCACTCTGCGTAAGATCTTAGCCACTGCACAGATGACAGGAGCATCTGTGGCTAATGTCCACAATTAGGGTACCCACATCCCCACTGCTGACCTGGCCTTCACCTCCAAGGTACTTAATGGGCAGCTTTGCCCCCACCCTTTGGCCCCCACTTGGCTACATGCATTCCTTCCTGAGCCAGAGCACAGAGCATTTTTAGATGTGCTCCTGg s mm3.chr5 117024065 588 - 149719773 caggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaagaaggagagggagggaggaaggaaACCTGCAATTTTTGACCCAGAAGTCTCCTGTTTGCCAGTT-ATCTGCTGAAGAAAAGAGCTGCACCAAGAACTCA----GTCCAGCTGAGTTTTACTCAGGGCAAGC----ACTGA-------GGCTCCACGGACAGGAGG-AGGGCAAGGATTAG-ATGGGGATGTAACATGAAGGGGCAACCTGTACCTATCCACGAGCTCCTTCACGCCCTCTTTGTCGGGAACCAGAGACTGGTCCTGATCTTCTGCCAGCGGGGTCCCTGCCTGGCGGTATATGCATCGGACCATGTAGCGTACTTCTGACCAATAGTTCTGCAGTTGTTGTGGTTCCCGTTCTGTCTCTGCTGAGATGTCTCTGT--GACAACATAGGAG-------------------------------------CCAGCAGA-----ATTAAGGGA-------------GGTAGTCTACCTAACTTC----------CCACCAGGTACTCCTCAACTC------------------------------------CATACTCTG---------------ACCCCAT--ATGACAAAGAGA--------------------------------------------------GCCCTT------------------------GCTTTCT----ATCCTTTGGTGCC-----------------TTGTTCCAGGCCAGGGGTACAGC---------------CTTTTGC s rn2.chr14 78813091 517 + 107821284 -------------------------------------------------------------------------aGAGGG-GGGTGGTGGAGAACCTACAACTTCTTACCCAGAAGCCTCCTGTTTGTCAGTT-ATCTGCTTAAGATCTGAGCTGCACCAAGAGCTCAA-AAGTCCAGCTGAGCTTTACTTAGGACAAGT----ACTGA-------GGCTCCATAGACAGTAGGGAGGGCAGGGATTAG-AGGGGGCTGTAACATGAAGGGGCAACCTGTACCTATCCACGAGCTCCTTTACTCCCTCTTTGTCGGGAACCAGAGACTGGTCCTGGTCTTCTGCCAGCGGGGTCCCTGCCTGGCGGTATATGCATCGGACCATGTAGCGTACTTCTGACCAATAGTTTTGCAGTTGCTGTGGTTCCCGGTCTGTCTCTGCTGAGATGTCTCTGT--GACAACATAGAAA-------------------------------------CCAGCAGA-----GTTAAGGGA-------------GGTAGTCTAACTAACTTC----------CCACCAGATACTCCTCAATGC------------------------------------CATACTCTG---------------ACCCCAC--ATGACAAAGACA--------------------------------------------------GGCCTT------------------------GCTTTGT-----CCCTTTGGTGGC-----------------TTGTTCCAGGCCAGGGGTATAGC---------------CTGTCAC a score=6144.000000 s hg15.chr4_random 931273 94 + 1219494 GATGAGCTCCAGGGCTCTCCCCTCAGCCACTGAGAAGCAGCCAGTCAGGCTC-TCCCCCAT---CGCTC-CTCTCATTCACTGAG-----GCTGCTCTT---AGATT s mm3.chr5 117024653 106 - 149719773 TATGAACTCCTAGCCTCTTCTTTCAACTCCTAATACCTTGCATCACAAGCTCATCTTCCATACCCATTT-TTTATGCTCATCTTAGACTGACTTTTCTTTTCAAATT s rn2.chr14 78813608 100 + 107821284 TATCAACTCCTAGCCTCTTCTTTCAACTCCTAATACCT--CATCACAAGCTCCTGTTCCATACCCATTTACTTATGCTCACTTTC-----CTTTTTCTTTTCAAATT a score=59942.000000 s hg15.chr4_random 931367 433 + 1219494 CTGA---TTATTTAA--------GGACTCCTTCTCTTGTTCTGAGGAT------GCTTCCTAGTG-CCAGTTCCTCAAGAGCAACAGTTTTTGTCTTACTCATATGGTTCTTTCT-CTC--AATAGC----GAAGCAACTGCCTTACTCTTGTTGC--------------TGTCTGTCACATTAGCCCAGTTTCTCCGTCCAGCTCCAATATGCAGGTCTGCATGTCATTGTGGACAGGTGTGAGCA--ACGTGGCAC-ACACGTCACATACCTGCGCTCACTGCAGGCCTCGCACGAGCA------------TGCGGTGTC---------TGAAGGCAGCGTCTGTGCACCCAGAGCGAGCCTCCCACCACTGCCGGCCTCTGGCTGGGAGCCACCAAGCGAGGAGTGAAGAAGAAAATCTTGGCTCTGTTTTAAAAAGAGAACAGAATAGACCAGTTATGTTAAAATGTTCACGGCATCAATTTTTTATTAACT s mm3.chr5 117024869 471 - 149719773 TTGACATTTATTTAAATTCTAAGAGTTCTCCAATTTTGCTCTTTAAATAGCCCGACTTACTAGTGTTTAGTCTCTTAAGGGCAATAA-TTTTATCTT-TTTGTATAGTTTTTTCCTCTCATAATAGA----AAAGTCA-TGTCCTACTCTTGGAAATATGTCAAACAGA-TATTTGTCAAAAGAACCCCATATCCCAGGCAAGC-ACAACATATCCTTACATATCCCGT--------GATCCTAGCATTAAGTGACACAACACAATACATACCTGCGTTCACTGCAGGCCTCACATGAACAGGCATCTGAGGGCGTGGTGCCTAGCCCTGATGAGGTCATGGTCTGTGTGCCTAGGGCCAGCCTCCCAGCACCACTGGTCTCAGGCTGGGAACCCCCAAGAGATGAGTGAAGGAGAAAATCTTGGCCCTGCTTTAAAAATAGAATACAACAGACCAATT--------ATGTTTATGGCATCAATTGTCTACTGACT s rn2.chr14 78813818 474 + 107821284 TTGACCTTTCTTTAAATTCTAACAGTTTTCCCATTTTGCTCTTTATATGGCCCAGCTTACTGGTGTTTAGTTCCTCAAGGGCAATAA-TTTTGTCTT-TTTGTATAGTTTTTTCC-CTCATAATAAATAGCAAAGTCA-TGTCATACACTTGGGGATATGTCAAACATATTATTTGTCAAAAGAAACCCATGTCCCAGACAAGC-ACAACATATTCTTACATACCCCAT--------GACTCTAGCA-TAAGCAGCACAACACAATACATACCTGCGTTCACTGCAGGCCTCACATGAACAGGCATCTGAGGGTGTGGTGCCTAGCCCTGATGAGGTCATGGTCTGTGTGCCTAGGGCCAGCCTCCCAGCACCACTGGTCTCTGGCTGGGAACCCCCAAGTGATGAGTGAAGGAGAAAATCTTGGCCCTGTTTTAAAAATAGAATACAACAGACTAGTT--------ATATTTATGACATCAATTGTCTATTGACT a score=70944.000000 s hg15.chr4_random 969781 417 + 1219494 GGGGGTCCCCCATATTTTTGGCCTTCNGTTTTTTAATCATCAGGTTTTGAGGAAANTAAGGGNGGTANTGGNTATTTTGAGGAGACTTAAAGACAATTCTTTGTTAATTTGCACTTTTCAAAACAGAGTAATATAAAATAGTAAAATGTC-AGACCATCA-------------TTTTATGTCATATATNGTTGNT-ANGAAGAAGCCATGTCCATACNTCATCCTTCAGGGCCATGTTTTCCCCGCCACCATTCAATTCGCTGTGGATTCCATTCATGTTGGCCACCACCTCGGTATCATCATAATTACTCAATGGATAAATATCAGCAAATTTGGCTGACAATGGTGCAACATCTTCATCATCATTACAACTGACACAAGCAGAGATGGTCATTGTGAGGTCATTCAATTGTGAAAGACAATGAGTACCGC s mm3.chr5 117001615 422 - 149719773 GGGGGCTCCCCACTACTCTCACCATCAGCATCTTCATCATCAGCCTCTGAAG-AACTACGGCTGGTGCTGCTTA-CCTGAGGGGACTTAAAATGCAGCATTCTGTAGCTT-TCATTTTCAAAAC--AGTAACATGAA----TGAAGTGTAAAGACCACCAACCACTTCCTACATTTACTGACACC-ACAACTCCTCATAAAAAAGCCACACTCATACCTCATCTTTCAGGGCCATGTTTTCCCCACCACCATTCAGTTCGCTGTGGATTCCATTCATGTTGGCTACCACATTGGTATCATCGTAGTTGGTCAACGGATAAATGTCAGCAAACTTAGCTGACAATGGTGCGACGTCTTCATCATCACTACAACTGAGGCAAGCAGAGACGGTCACCATGAGGCCCTTCGATTGGGGAGGACAGTGAGGAGCAC s rn2.chr14 78787734 418 + 107821284 GGGGGCTCACCACTACTCTCAGCATCAGCTTCTTCATCATCAGCTTCTGAAG-AACTACGGCTGGTGCTGCTTA-CCTGAGGGGACTTAAGAGGTGGCATTTTATAGCTT-CAGTTTTCAAAAC--AGTGATGTGAA----TAAAGGGTAGACACCACCAACCACTTC-----TTTACTGACACCCACACCTCCTCGTAAAAAAGCCACACTCATACCTCATCTTTCAGGGCCATGTTTTCCCCACCACCATTCAGTTCGCTGTGGATTCCATTCATGTTGGCCACCACATTGGTATCATCATAGTTGGTCAACGGATAAATGTCAGCAAACTTAGCTGACAATGGTGCGACATCTTCATCATCACTACAACTGAGGCAAGCAGAGACGGTCACCATGAGGCCCTTCGATTGGGGAGGACAGTGAGGAGCAC a score=3831.000000 s hg15.chr4_random 970213 55 + 1219494 ccatttacaaaacgctcatcacagcaaccttctatcaaaaagcaattttccattg s mm3.chr5 117060403 40 - 149719773 cccttttcaaaacactca-tacaacaaggtt--------------ttctcagtag s rn2.chr14 78850647 41 + 107821284 tccctttcaaaatactcaatacagcaaggtt--------------ttctcagtaa a score=32493.000000 s hg15.chr4_random 970562 496 + 1219494 gcaattttccactcattgttaaaatgtcacctttaccttgaggggacagattacgtgtttctttttctcaaaaatactggatttgctagatagctttctactgacagccacttattacagcaaaggtttgtaaatttagaccacttacctttatgtaaaagaaaaacattcaattcaccttcagaataggcaatgcttttacctttgccaaaagatagccagcaaacccctgtgtcttgccaagtactttcagttactcccc-----cgtcattacaaaatattgtgaagatgtact-actctataaaggtctcaggctgacccattagtgcttctggcttcaactggttgctgtaagcagttccctatgcatcatgtggtgaacccatttctcatgttactctttctgcaatcctgccctacccaagaatctctttctacctttgtttcttacctgacggactacatgaattttttttttttattacaaagtggctactct s mm3.chr5 117060443 330 - 149719773 gcaattttctactcattgctaaaatggcactttcatcttgagaaggcaaattaag----tattttgtgaaaaaatacggaacttactaggtagctttctactgacaaccactt-----agaaaaagtaagtaaatttag------taccttcatat------------------------tcaaaagaagaaatgCTTTTTTCTTGGTCACAA--------------------------------------------TCCCCATTCTCCTCCTTACAAAACACTGCAAAGACTGAGAAACTCTCTCCAAGTCTCC---------------------CAATCCAACCTGCTGCTATCAGCACCTCTCTG--TCTCAT-TGGAAAATAAGCTTTGCCAGTTTCTCCGTCTGAAA-------CTTCACAGAAA----------------------------------------------------------AAAACGGCTGCTCC s rn2.chr14 78850688 385 + 107821284 gcaattttctactcattgctaaaatggcactttcgtcttaagaaggcaggttaagattttattttttgaaaaactactgaacttgttcggtagctttctactgacaactgctt-----agaaaaagtaagcaaatttagatgaattatcttcatataaaaga--------taactcatcttcaaaacaataaatgctttttacttggtcacaagatgaccaacaaaccc--atatcttgccaaata--------taatccccatctcccttattacaaa-CAATTCGAGGACGGAGA---TCCCTCCAAGTCTCC----------------------ACCTCAACCTGCTGCTATCAGCATCTCTCTGGGTCTCAC-TGGAGAGTAAGCTTTGCCAGTTTCTCCTTCTGAAA-------CTTCACAGAAA----------------------------------------------------------AA--TGGCTGTTCC a score=13363.000000 s hg15.chr4_random 971368 143 + 1219494 atcattgtgtatatccagttt-tcccacaaaaccttgtttactaatgaaatcatttcagaatccacaagcttgcgtctcatc-aaaagagtactcaactggaatctatcaaaaaaaaacaggctaacaccta-taaaaatacccac s mm3.chr5 117060773 129 - 149719773 ATCACCATAAATATCCATTTTGGGCCATAAAATCCTGTTTATCTAAGAAACAAATTCAAAATCTATCTGTACACTCTAC----GACACACTAATCAATCAGAATCA-------------AGGCTGACTCTTATTGTAAACACCTAT s rn2.chr14 78851073 133 + 107821284 ATTACCACAAATATCCACTTTGGGCCATAAAATCCTGTTTATCTAAGAAACTACTTCAAAATCTATCTGCATATTCTATCTCTGACACACAAATCaatcagaatct-------------aggctggttcttattgtaaacacctat a score=38081.000000 s hg15.chr4_random 971850 350 + 1219494 cccacaccatc-------------------atttattctaaccatttactcttccaaatctcctggaattgattctatgaatactccaaaaatatttgctgacaaaataatat-atttcttttgttgccatattgtttcctatgtattatttctgccattctGCTCACTCCCCCACCCCCTATTGGAAAAATAGCACTTTTTCCAGTACAAAAAAGTTCGAAAATACTTTTCCCAAATAGTAGGTGGCTATTTTGTCTC-CAATATTAGATACTTGTGGCAGAGGTGCAGACTGGCTCCTCCACCTCCACAGCTGAATGCTGTCCTTTTGTGATGGAAGTCATTCATGGAAGCC--CAGA---------CAAGAGCCTTTTC s mm3.chr5 117060902 302 - 149719773 CTTTCATCATC--------------------------------atttgttttctc--atct---gccaaagtttctatgaatattccaaaagtgtttgctgacaaaataaggttacttctgttgctgccacatggct--ctttacgttatttctgccact-tgcccactctt---gcccctgctggaaaa-----------------------------------gcttttccc-aatgatagatggcCAATGTGCCCCACAGTTCTGGAAAGGTATGACAATGTTGCACACTGACTCTACTA-CTCCACAGCAGAGAGCTACACTTTTGTACTGGAGACCTTTCTTGAAATCCAGCAGAGATCCAGTTCAGCAGACCTTTC s rn2.chr14 78851206 337 + 107821284 ctttcatcatctcaaagcaatcttccaaaatttcctctcaatcatttgttttctc--atcttctgccaatatttctatgagtattccaaaaatgtttgctgacaaaataatgt-actgctgttgctgccacatggctt-ctatgcgttattcctgccact-tgcccactctt---gcccctgctggaaaa-----------------------------------gcttttccc-aatgacagatggcCACTGTGTCCCACAGTTCTGGAAAGGTATGACAATGTTGCACACTGATTCTACTA-CTCCACAGCAGAGAACTACACTTTTGTACTGGAGGCCTTTCTTGAAATCTAGCAGAGACCGGGTTCAGAAGACCTTCC a score=785.000000 s hg15.chr4_random 972200 32 + 1219494 CACTAGACCTTTCAAAAAGTTACATGCTCCTg s mm3.chr5 117061540 20 - 149719773 CAGCAGACCTTTCAAAA------------CTG a score=27031.000000 s hg15.chr4_random 972534 278 + 1219494 TTTTAAATGCCATATGCTACTAATTCTCCGTATTAAATGCCTGCCTATGAAAACTACAGCTGCTTCTGCATCTGAACCCTAAGCAATACAGA-AATAAAagtaagaaaactcaaaaaggagtttctctgagcttaatacaattttataaaat-------------actagattgtgtagtgcatg--------actttaaatacagctg-aaaatttataggtgatgtttctcttatgaatgctta-----aaatattttggtgaatgtgaaggctctatatactttcc-----ttccctaacatctcaag s mm3.chr5 117061560 262 - 149719773 TTGTAGACA---------ACCAGCTCTCTG---CCAATGCTCACC------AGGCAGAGCAGCTTCT--------ACCCCA--CCAAACAGACAAAAAAAGCTAGAAACCTTGAG------------CCATTTTAACAAAACTTTATAAAACCTGGAGTCTAGTGATTACactgagtaggacatg--------actttaga-atggctgcaaaagttatgggtggtatttaacttctgagtgcttatttttaaacattttgccaactgtaaatgctacattttccttccctaatctcccTAATCTCTCAAG s rn2.chr14 78851550 276 + 107821284 TTGTAGAAA---------ACCAGCTCTTGG---CCTATGCTCACC------AGGCAGAGT-GCTTCTACAACTGAACCCCA--CCACACACA-GATAAAAGCTAGAAACCTTGAG------------TCATtttaacaaaactttataaaacctagagtctagtgaatacactgagcaacacatgactttagaactttaga-actgctgcaaaagttataggtggtatttaactcctgggtgcttatttttaaacattttgtcaactgtaaatgctacgctttccttctctaatctccctaatctctcaag a score=23854.000000 s hg15.chr4_random 972868 168 + 1219494 atttcaaataatctttgagggttgattcccagttctgctgagatcatttttttaaacttcatacatggccaatgaagagcttgcacagaaagtggaagtgttggttctgccataaatgtccttgttgttccacaca----cactattagcattatctctgatccagagtttc s mm3.chr5 117062355 164 - 149719773 ATTTCAAATCATCCTTGAAAGTAGATTATCAGTTTTACTTAGATCATTTTCAT-AATTTCATATA--GCTAATAAGCATCATGTGAAGAAAGT----TAGTGGGCTCTGTCACAAATGAGCCAG-TGTTTCATGTGTTTTTACTAATAGCAGCATCTTCAACCCATGGCTTC s rn2.chr14 78852266 164 + 107821284 ATTTCAAATCATCCTTGAAAGTAGATTATCAGTTTTACTTAGATCATTTTCAT-AGTTTCACACA--GCTAATAAGCATCTTGTGAAGACAGT----GTGCAGGCTCTGCCACAAATGAGCCAG-TGTTTCATGTGTTTTTACTAACAGCAGCATCTTCAACCCATGGCTTC a score=7318.000000 s hg15.chr4_random 973190 58 + 1219494 TCTCTGTTTTTGTGAAGACCAGTTTAATTAAAATTAGC----AGAACTCAAGAATGTACTGA s mm3.chr5 117062920 57 - 149719773 TCTA-----TTCTGAGAATCATTTTAATTAAAAGCAGACAAGAGAATCTATGGACATACTGA s rn2.chr14 78852805 57 + 107821284 TCTA-----TCCTGAGAACCATTTTAACTAAAAGCAGACAAGAGAACCTATGGACATACTAA a score=2316.000000 s hg15.chr4_random 990159 152 + 1219494 agtaatggctgccaagactttaggagttggggagagtgtaact--------ataacatgagggagtttttgtgaacaattaaactgttctgtatcctgattgtggtagtagatatatgaatct-acagttgttaaaattcaaat-------------gcaaaat------gcacatttta s mm3.chr5 117069761 177 - 149719773 AACAGTGAGTGTCAAGAATA-AAGAGTgggggagagtacaattgtacagggataacaggagtatgtttctg--attaatgaaactgtcctgtaccttgactgacacagtaacctcaagagactcacatgcgttaaaatCAGAGTAATGAGGTTGGAGGCAGAACTGAGCAATAGGTAGTA a score=7061.000000 s hg15.chr4_random 990931 380 + 1219494 TAGTATCAATTTTGCTACATGTTAATTTCTAAAAATTAGCATATAACAGTaccatttaggaaaactatcaggcagtacccactaaagtcaaatcgaagtacacccagcaattctacccccagccatatgaccaactga----gtgctcatgtccaccaaaacacatgtacagaaaggaatagacacatcagttgactcatagcagccataaaacaatccaaatgtccattagaatgg--tgagatgaattgtggaatattaacacaacagtaagtttacatgccatgaaaaa--------aaaaatgatccactgctaggacaacaacacagatgcatctcaaatataatgttgagccaaagagccctagcacaaaa--attcttgttctatgaaa s mm3.chr5 117070311 351 - 149719773 c-------------CTATACATTAACTTTTAATAA---GCCTACAGCAGCatcacttagaaaaactgatcagttgaacc---tcaagtcacatatctacatactcagcaattctattcccagaaacatgcccaattcaaacagtgcccatgcacatcaaaaggcacaagcagaaatg----------taagctcattcacatcagccttaaagca-tctcaatgtccatccacattacatcagacagactgaggaatttt--cacagtgtaaagtgtacatcctatatagaacaacagcaaaaagcaatct-------------taccctggagtcatcacaaatgaaaagctgagccaaagcactgaggcacaaaacaaCCCTTTTTGTATAAAA a score=1783.000000 s hg15.chr4_random 991311 12 + 1219494 ttcaaagagagg s mm3.chr5 117070662 12 - 149719773 CTCACAAACAAG s rn2.chr14 78864705 12 + 107821284 CTCACAAACAAG a score=19915.000000 s hg15.chr4_random 992347 201 + 1219494 TTGA-TATATTTA---TTACATAGGTGTACACATAGAAAAAATACTGAATCACAGACATGCTCTCTGCAGGTACACCATTTCTAAAGCGTGTATGGTAACC-ATTTAAACTTTTAAAAGTTAAAATTGTTAATTTTAGTTAAGACACAGGAAGTTCTACATTTTTCTTCAACCTATTTCCTCAGGTCACTAGGCAAATATGAACTA s mm3.chr5 117070735 185 - 149719773 CTGG-AACACTCA---TGTCATGAA---GCACTCTAAAAACCTGC-----CACAACAGGGCTCTCTGTGATGGCACTTTTTCTAAAGCCTGGATTGTAGTTAATGTAAGCT-----AAGTTAAACTAG-TAATCCT--TTAAAGCACCTCAAGTTCTAGATTTTTTTTCAAGCTACTTCCTCAGATCACAAAGC-AATGTGAACTA s rn2.chr14 78864773 191 + 107821284 CTGGGAACACTCACAGTGTCATTAG---GCACTCTAAAAGCATGC-----CACAACAGGCCTCTCTGTAGTGGCACTTTT-CTAAAGCCTGGATGGTAGTTGATGTAAACTGGTCTAAGTTAAACTAG-AAATCCT----AAAGCACCTTAAGTTCTAGATTTTTATTCAAGCTACTTCCTCAGATCCTAAAGC-AATGTGAACTA a score=44519.000000 s hg15.chr4_random 993231 492 + 1219494 TTG----------AGAAGGGCCTCCCGGAAGTTTTCCTTTGGTCCTCCTATGTGGTTATGGGAAATGTACGTGACAGCCAAAAGGAGCTGGCAGCCCTGGCCCCTCCTCCCCCGCTTTGTTAAGTTTTCAGGGGTATTTAGTGGTTTGGTTACTCAGGTATGTATTTAGGGTTCGAACTTAAGGAATTTGAAAGGTGAT--TTTTTTCAGTTTTGTTTATGAAGACAGCTAGCACACATTGCACCTACCAATTATGGATTCCTGCCACTTTTATTCAACCGTTGGTCACAACATTTCAGAGGGTACACTATTTATAAGTGGGTATGCAATTGGCGCAGTCATTTCCAGTTATCCCATTGTCTGCTGAAAGAGAATAGATTTTTTTTGAAAAGTTGCGTTCTTATAATGTTATTTAAACTCTTAAATTATGTAGTTTT--AAAGATATT-GCAATTAAAAAATGAAAGAAGCGTTGGGAGTATTTTTGTGCTAAATCATGACACAAAt s mm3.chr5 32645648 419 + 149719773 TTG----------AAAAGTGCCCCCTAGAAGTTTC-----------------------TGGGTACCGCC--TGGCGCACCACGGGCGC-GGCTGTCTTG--CCCTCTGTGCCTGCTGCTGTAAGCTCTCGGGAGCCGCCGGGG-TCTCTTTCCTCAGGAGTGTCAGCTGAGGATAGTCGCAAGGGTT----GGGGTAACTATTTTTTCAGGTTTACTTACGCAGGCA------------------TGCTGTGGATGGACCGCTGTCTCTTTTATTC---------------TGTTTCAGAAG--ATAGTGCTGGTACGTGGG-ATGCAGTTGGCATAATCGGTTCTATAGATTGGATTGGCCACCGAATGATTATGGGTTTCTCTC---AAGTTGCGTTCTTGTAAGGTTGCTAAAAC----AAGTTATCTTCTTTTAAAAAGACATCCACAGTGAAGAAACCAAAGC--TTTAAGGGGTATTTGTGTGCCAAGTCATGAGGCAGAT s rn2.chr14 28953767 427 - 107821284 TTGGGGCTGACTGAAAAGTGCCCCCTAGAAGTTTC-----------------------TGGGTACCGC---TGGCGTGCCACGGGCGC-GGTTGTCTTG--CCCTCTGTGCCTGCTGCTGTAGGCTCTCGGGAGCCGCCGGGGGTCTCTTTCCTCTGGAGTGTCAGCTGAGTATAGTCTCAAGGGTT----GGGGTAACTATTTTTTCAGGTTTACTTACGCAGGCA------------------TGCCGACGATGGACTGCTGTCGCTTTTATTC---------------TGCTTCAGAAG--ATAGTGCTGGTACGTGGG-ATGCAGTTGGCATAATCGTTTCCATAGATTGGATTGGCCACCGAATGATTACGGGTTTTTCTC---AGGTTGAGATCTTGTAAGGTTGCTAAAAC----AAGTTATCTTCATTT--AAAGACATTCACACTGAAGAAACCAAAGC--TTTAACGAGTATTTGAGTGTCAAATCATGAGGCAGGA a score=4851.000000 s hg15.chr4_random 994722 50 + 1219494 -CTGCCTTTATTA------TTTTTGTCGCGTTATTCAAAATCAGATAACTGTATGCC s mm3.chr5 32646603 49 + 149719773 -TTACCTGAAATAACTTGCTTTTTGTAGC--TCTTCAAACTCAGA-----TTATGCA s rn2.chr14 28954722 55 - 107821284 TTTACCTGAAATAACTTGCTTTTTGTAAC--TCTTCAAGCACAGATGACCTTATGCA a score=6945.000000 s hg15.chr4_random 994905 41 + 1219494 TATTTTTGACAGGACTGTGATATTCTGTTAAACTAGTATGC s mm3.chr5 32646652 37 + 149719773 TAATTTTGACAGAATTGT----TTGTGTTGAACTATTATGC s rn2.chr14 28954777 37 - 107821284 TAGTTTTGGCAGGATTGT----TTGTGTTGAACTATTATGC a score=6303.000000 s hg15.chr4_random 995238 101 + 1219494 ATCAAGGTTTTTGACCATGACCCACTCTTATGACCCACTCCAAGAAATAAAATCCGTTAAGATCTACGAAACATACACATAAACACAAAAATTTCACAAAA s mm3.chr5 32646689 62 + 149719773 ATCAAGAGTTTGGGCCATCACCCA-----------------------------CCATTAAAAAC----AATCATACAC------AAAAAAGTTTCATAAAA s rn2.chr14 28954814 61 - 107821284 ATCAGGAATTTGGACCATAACTCA-----------------------------TCATTAAAAAC----AATCATACAC-------AAATAGTTCCATAAAA a score=8763.000000 s hg15.chr4_random 996888 82 + 1219494 TATTTTAATACTTTTCTGATCTTTTCTGTTCCATGTAATCTCATTAATAAAATCTGGGTTATAGTCCACAGAATTAGTTCAT s mm3.chr5 32646752 63 + 149719773 GATTCCCAGTCTTTTCTGGTCTTTGCTGTTCTACTTCATTTCCTTAATAAAAT-------------------ACTTGTTCAC s rn2.chr14 28954876 63 - 107821284 GATTTCCAGTATTTTTTGGTCTTTTCTGTTCTACTCCATTTCCTTAATAAAAT-------------------ACTTGCTCAC a score=9830.000000 s hg15.chr4_random 997267 69 + 1219494 GCCTCTCTATTGTGTACTATTGAGTTGTGTGCTGCACCTTG----ACAGTTGCTTTTACTGTATTTTAAGCTT s mm3.chr5 32646815 72 + 149719773 ACATTTCT-CTGTGCGTTATTGAATTTAGACATACATCATGTAAAAACATTGCTTTTATTGTATTTTAAAGTT s rn2.chr14 28954939 72 - 107821284 AGATTTCT-CTGTGCATTATTGAATTTAGACATACATCATGTAAAAACATTGCTTTTACTGTATTTTAAACTT a score=7410.000000 s hg15.chr4_random 997991 111 + 1219494 AAGCTGTCTTTAGTTTTTAA--GTTTCTTTGTAAGTATTTTAATAATTGTTCAT-TAAAGAAACTCTTTA-TGGTAACTGGGGT-AAAATATTCTTGACACAGATCACAGAAA---GTC s mm3.chr5 32646887 103 + 149719773 AAGGTGTGTTTAGTTTAAAC------ATCTTTTTGTGTTTTCCTCAT-----ATACAAAACAAGTCTTCA-TAGCAGTAGAACTAAAAATATCCTTGTAAC----CCCAGAGATCTTTt s rn2.chr14 28955011 110 - 107821284 AAGGTATCTTTAGTTTAAACGTGTGTGTGTGTGTGTGTTTTCATCAT-----ATACAAAACAAGTCTTCATTGGCAGTAGGGCTAAAAATGTTCTCGTAAC----CCCAGAAATCCTTt a score=29850.000000 s hg15.chr4_random 998102 355 + 1219494 TTAATGTA------------ATTCTGAAGCCTCTGAATTGTTTCCCCACAGA-TGGTGAGCTTTTTGGAGTACCTTGTATGGTGCAAAAT-GGCACCCAAAACAGTATCAACCAGAAACAGTGAGTGGTTTCTGGCCCTATGGTTCCCAGGGAGGCTTTCTGAGTCCTGGCAAGCAGCCTCTACACTCCGTA-GTCACCAGGCCAGGAGGTGGATAAGAGAGAAGGCCGAGTGGAAGGACTGTCTTGATTTTCAGGA-GTGGTCACAGTCCCACTGTCCTGTGTGCGGGACACAGCACTATGTGTTATACCCAGGACCACCTTCATCGAGGTGGCTGCTGAGCCAAAGAGGGTGTTTCTGCATGTGGGTAG s mm3.chr5 32647140 313 + 149719773 TCCACAGA------------ACTCTGAAAATCC-----AGTTTCCATACAAAATGGTAAGCTCTTTGGG-TGCCTTATATGGCACAGCACAGGTATGCATAACAATGTCA---GGTAAC----------TGTTGGACCTGTACTTCCCAGAGAG-------AAGTCTTG---AGCTTCCTCTACTCTCTCTAGGTCACCAAACCAGAAGGTGACTAAGAAAGGACA------GGAAGGACTGTCCTTATCCTTAGTAGGGAGTCC----CACATTGCTCTTAGTGCTGGGCACAGAACTGTAGGTTAT-------ACTATCTTATTTGAGGTGGCTCCTGAGCTAGTTAGTGGAAATGTGGGTATGGGTAA s rn2.chr14 28955271 317 - 107821284 TCCACAGAGGCCTTAATGCTACTCTAAAAACTC-----AGTTTCCATACAAAGTGGTAAGCTCTTTGGG----------TGGCACAACATAGGTATGCATAACAGTGTCA---GATAATGGTGTCTG--TGTTGGTCTTGTGTTTCTAAGAGAG-------AAGTATTGAGAAGCTTCCTTTACTCTCCATAGGTCACCAAACCAGAAGGTGACTAAGAGAGAAGAC--AGTGGAAGATCTGTCCT-----TTAGTA-GGAGTCCCAATCACAATGCTCTCAGTGCTGGGTACAGA-------------------ACTACCTTATTTGAGGTGGTTCCTGAGTCAGTTAGGGGATCTGTGGGTATGAGTGA a score=6064.000000 s hg15.chr4_random 1004684 33 + 1219494 GCTTCAACTTCTTCCTGCTGGATCTCCTGGTTT s mm3.chr18 33627900 33 + 91041441 GCCTCATCTGCTCCCTGTTGGACCTGCTGGTTT s rn2.chr18 24176283 33 - 82509072 GCCTCAAGTGCTCCCTGTAGGGCCTGCTGGTTT a score=386855.000000 s hg15.chr4_random 1005938 2564 + 1219494 AACTTCCTGAACACACACCAA-TGCAAAATACACTCAACGTGAGGCAGATAAGAACCCCGCACCTTGGC-AAAAAGGGGGGAAATTGATTCCAAAGAGCAAATGAATGTGTAAAAGATATTTGGTTCAAATTAATGGTTTTATTTCCATCTGTAACACTAGCAGAGGAGTCCAAAGCAGACTGATATCCATGGATATAGTTTAAATGTAACAAAG-AAAGAGTTGAACTATGTACATTGA--AAAAAGGAAAGACA---TTTCTTCATACCAACCTTTCCCTAGT-TCGCAGTTTCTGAATAGTAGAAACAAAACACATTTTTAAATCTTTCTATCAATTTAATTTAGGACGAAGTAACACAACTTTTATAATTAACCACTGAAGTTGTCTTTAAGGACAAAACTTAAATTTTAAAATGGGTGTTACCATATTTTATGAGTGGACTGACTCCAAGGTTGCCTTGCTCC----AAGTCTGGGCATCGTGACA-TTG------------CCGTGATGCCCAGAAGAAAGTTAATGGCAATGATGTCCAGTCAG-AGGGCAGACATGCTACACATCACAATGATGAGAGCTGCGGATTCTGCCCTCTTCAACTCCAAGTA-----GAAAA--TTATTATTTTCATTCAAACTAACTGGAAGTGAGCCAAACAGTTAAAAAGTCAGAATGAAGAATAAAACAATTTTCTTTTCACATAGAGGAGGGACACTCCTTCAGCCCCGTCTAAAGTGAATTCTGTGCTGAGTCCCTGCTCCTTCAGAAGGGTAAACTGAAGGTCAGTTATTGCTAACAAAGCCAGAAGTGGCCCCTTTCCCGCCCTGAAGATGTTTCACACGAAAAGGCCGTTTGTTTGGCGTGAGGCCCTCTGAGGAAGGACGACAGTGGAAGAGGAGGCATGCCGGCACTGTAAGG-----CCTCTC--TCGTTAGCCACCCCCCAGGCCCTGTGCTGTCAGGGGCAGCTTGGGCCAC-TTTGCTGCCCCTGAGAGAACCTGAGGCTCCCGCGTACCTGTGGAGCGAAGGAGAGGTTGTCATCTGGGCCC-CTG------------------TTTCACCAGTCAAAACCTATGGAGCAGTCAGAAGCCCGAAGCATCCAAGCCCAG-TGGCCAGGAA--------GCTTCTGAAATAAACGGCACTGGGTTGGGAAGGATGAG-AAAGCCAAGACAG-----------GTGGGCCAGGTTCTCCGAACATGGGGCAACAGTGACCTGGGCAAAAGCCTGGAACTGAGCGGCTGATAAGGCCACAATTACTGCCACCACCTCTCAGTAT-CTACACGGGGGCAGACGTTAGGCAGTGGG--------AACTGAGGACTGGAGGGCG-TGTGGCAAACACGGGATGGATTTTATCAGAAAAGAGAGGACACCCAAACACGTGCCTGCCCTATTTATCTTGCATGTCCTGTGCCAGGTGAAGGACGCTGGAGCATGGGTAAGGTTCCTGAGAACAACTGGTGGGCAGAAACGGGCTGGGATGGGCACTGCT-CCACAGGCAACATTAAGCCTCTGAGGGGGACACTAATAGTGCTACATCTTGTGGGCTGCTGAAAAGTAGGTAACGAATGGCCTTTATTGCACTTTTTCGTTCTTAGGAAACAGGGGAGTGCCCTGCAGAGTTTCTCTTGATTTGCAGAAATCACTGCAGATCAATGATAAGGTGCAGGCAGAATCACGGGTGACCTCTGACTCTCAAGGGAAG---------AAGTCCAGTGATTG--GTCT-TTCCAGGGCCTCAAGGGGCCACTCTTCAACCTGGGATCCTCGAGCTGGGTGAACCGGGTCTGGCTTGGTCAATGTGTGGCAGGCAGATTGGTCGACCGGCAGACACTTGGGACAAAAGGTGGTGTGCCCGGGAAAGCTGGGGCAAACTTTCCAAACAGGGAAAATTTCTTGGCAAATGTGCAGATTCTGCAACCAGACTGGAACCACGAT------TCCCAATGCGCCTGACTCCCTTTCTCCC-ACTCTAGAACTGGACCACCCCAGAGGAACAGAGA--------TGGCCTGGGAGGG-CCCTGGGTCCAGCGCCATAGCATCAAACTGGAGATAACAAAAGG----AAGGGGTTGG-AAACAAAAGAGCAGTTTACATATCAGATGTTGGTTTCGAAACAGTCTTTTTGATCTCAGGAAAATGGAGGCAGATACCA--CTGGAGA-ACCTGGCTGTCTGTCTGTCCATCCGTCTCTCCTGGGGGGCTCTGAATACTTCATATATAAATGGGGTGGTACCGTTTGTGGTTGATCTTTTTCCTACAAGTTGGGCAAGTATTAGCATTCTTCAGGGAATCACGGAGGCACTGGCTACAGAAGACATGGCCGCATTCTGTGGAAACGATGAGACGTCCATTCTGCACGATCTAGAAGGCATTAAAAAGAA--------------------------------------------GAGCCTCCGAGTTTGCCCTTGTCCCAGAGCAGCCATGGGGCCAGAGAATCCCACCCACCTATGCCTAAGATGACTAATTAAAGGAAAGCAAGGGCCAGGCTACAACAGGGAGGG-----------------GTCTGGAGAGCTAACTGTGTCTGCTGTGGTCTCTCTCAGCTGGAGAGCAGGAGGCAGGGGCCATGGCATCTCAACAGTGTGACAGCCCAAGAGGGTTATGAGGGACCCCAGTAAACA-CTAGCAGC s mm3.chr5 117090818 2530 - 149719773 AAATTCTCCAACCCACACACAGTACAAGTCACACTGAATGAACAGCA-----------CACACCTTAGCTAAAAGG------------TTCCAAAGAATAACTGAATAAATGAAAGATACTTAGTTCAAATT----GTTTTATTTCCATCTTTAATACT--------AGTCCAAAACAGACTGATACCCATGAGCATAGTTTAAATGTAACAAAGAAAAGAGTTAAACTATATACATTAAGTAAAAAGGAAAGAAAATCTTTTCT-ATACCAATCTTTCCCTATTAATGCAGTGTCTGATTAG----AA--GAACAC--------ATCTTTTTCTCAATTTAATTTAGGATAAAGTAATAGAACTTTTATGATCAACTTCATACACCGTCCTTGAGGAGAAAAC--AAATTTTTAAGTGGGTGTTACCACA-TTTACTGGTGAACTGGCTGCATGGTTGCCTTGTCTCTTTGAAGTCTGGCTTTCATTAGA-CTAACAAGACCAAGTCCATGAGGCCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAG--GAGAGCACACACATCACAATGATGAGAGCTAATGCTCTTACCCTCT--GAGTCCATGTAGAAAAAAAAAACCTATTACTCTCATTCAAACTAACTG-----AAGTCAAACAGCTAGAAAGTCAGAATGAAGAATAAAACTATTTTCTTTTCACATAGAGGAGGGCCACTCCTTCAGCTCCATTTAAAGTGAATTCTGTGCTGAGTCCCTGCTCCTTCAGAACATTACACTGAAAGTCAGTTATTGCTAGCAAAGCTC-CAGTGGTCCCTTTCCCACCTCAAAGATGTTTCACACAAAAAGGCTATTGGTTTGGCTTGAAGCCCTCTGAGGAAGTAGT---GTGGAGGTGGAGGCAGGCTGGCATT-CAAGG-----CCTATCCTCTACAAGCCGCCCTGT--GCCTGGTGTCCCCAGGGGCAATT--TTCCAC-----CTGTCTCCGTGAGCACCAGAGTCTCCCAC--ACATATACGGTGGAGCAGACATTGTTATGTGGTCCCACTG----GAAGAGGCACCATGCTTTGCTGACCAAAACCCACTGAGCAGTCAAAAGTCCAGAGGATCAAAGCTCAACTGGCTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTAT---TCAAGGGGTGTGGGAAAAGCTAGGGCAGTGG-AGGTTGAGTAGGGCAACACCTCTGACAAATGGGCAACGGTGACTTGGGCAAAAGCATGTAAGTGAACAGCTGATAAGGCCATTGCTACTGCTACCACCTCCTATTATACTATGCTTGAGCAGACATTAGGCAGTGGGAACTGAAAAACTGAGGGTTGGAGGGCACTGTAGACAACACAGGACCCATCTTAGCATTAAAGAGAGGACACTCAAACA----CTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAGCATGGGTAGGGTTCCTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCGACACTGGGCT------GAGGATACCAGCAGTGCTACAGCTTCCAGATTGCTGAAGAGCAGGTGAAGAACGGGTTTTATTGCACTTTCTCATTCTTAGGGAACAGG--ATCGTCCTGCAGAG--TCACTGGATTTGCAGAAAACACTGCACACCAATGATGAGTTTCAGGCGGAATCATAGGTCACCTCTG-CTCTCGTGGGAAGG-AAACTAAAAGTCCACCTTTTCGTGGCT-TTTC---------GTGGGCAGCTCATGCA-CTGGTATCCTTGGGCTATTTGGGCT--GTCTGGCCAGGTCACTGTCTGGCAGGCAGAACAGCTAACTGACAGGTGCCTTGG---GAAGGTTCTGCACACACAAGAGCTGGGGCAAACTTTCCCAACAGGG-AAACTACTTGGCCAACATGTAAGCTCCATAAAGAGGCTGGAGCCATGATGCTCAACCCCAATATGCCCGACTCCTTTTTTCCCTACTCTGGGCTCAGACCA-CCCAAAGGGGCAGTGATGCTGAGCTGATCTAGGAGGATCCCTGGACCGTGCTCCATAGCATCAAAC--GAGATAACAAAAGGATCTAAGGGGTTGGAAAACAAAAGACCAGTTTAC--ATCAGACATTGATTTTTGAA-AGTCTTTTTGAGCTCAGGAAACTGGAGGCAGATACCATGCAGAAAAGGCCAGCCTGGCTGTCTGTCCATTGGTCTATCCTGAGCAGTTGTGAACATTTCATATATAAATGGGGTGGTACCGCTTATGGTTGATCTTTTTCCTACAAGTTGGGCAAGTGTTAGCATTCTTAAGGGAATCACGGAGGCACTGGCTACAGAAGACGTGGCCACATTCTGTAGAAACAATGAGACGCCCATTCTGCACAATCTAGAAGACATT-AAAAGAA--------------------------------------------CAGCCTTAAAGTATCCCTTTTTCTA----------------CAAAGACCCGAACCCACCCATCACCAAAGAGACAAG-TGAAACAAAGAAGGGCCTGGGTTGTATCAGAAAAAGCA---GTACACTCAAGAGTTTTGAACGCTGTCTGTGT-------------------------GACAGGTGACA---GACAGGACTTCCCCA-GGTGCAGCAGTACAAAGTGGCTATGGGGAACCTCAGAAAAAAATCAGCAGC s rn2.chr14 78886966 2509 + 107821284 AAATTCTCCCGCCCATACCAGGCACAAATCACACTGAACGAACAGCA-----------CACACTTTAGC-AAAGAG------------TTCCAAAGAATAACTGAATAAATAAAAGATACTTGGTTCAAATT----GTTT-ATTTCCATCTTTAATACT--------AGTCCAAAACAGACTGATACCCATGAGCATAGTTTAAATGTAACAAAGAAAAGAGTTAAACTATATACATTAAGGAAAAAGGAAAGAAAACCTTTTTTTATACCAACCTTTTCCTATTAATGCAGTTTCTGATTAG----AACTAAACAT--------GTCTCTTTCTCAATTTAATTTAGGATGAAGTAATAGAACTTTTATGATCAACTTCATAAACTGTCTTTAAGGAGAAAAC--GAATTTTTAAGTGGGTGTCACCATA-TTTACCAGTGAACTGGCTGCATGGTTGCCTTGTCTCCTTGAAGTCTGGCTATCATTAGAACTAACAAGATCAAGTCCATGAGGCCCTCGGGGAACTCAATGGCTGTGACATCCAAGGGG-AGGG--CACATACCATACATCACAATGATGAAAGTTAATGCTCTTACCCTCT--GAGTCCATGTA-----AAAAAACTTATTACTCTCATTCAAACTAACTG-----AAGTCAAACAGTTAAAAAGTCAGAATGAAGAATAAAACTATTTTCTTTTCACAGAGAGGAGGGACACTCCTTCAGCTCCATTTAAAGTGAATTCTGTGCTGAGTCCCTGCTCCTTCAGAACAGTAAACTGAAAGTCAGTTATTGCTAGCAAAGCTC-CAGTGGTCTCTTTCCTACCTCAAAGATGTTCCACACAAAAAGGCTATTGGTTTGACTTGAAGCCCTCTGAGGAAGTAGT---GTGGAGGTGGAGGCAGGCTGGCATT-CAAAGCCTATCCTATCCTTTATGAGCTACCCTGT---CCTGGTGTCCCCAGTGGCAACT--GACCACCTTTGCTATCTCCGAGAGCACCA-------------------------GAGCAGAGATTGTTATGTGGTCCCACTGGGAAGAGGAGGCACCACGCTTTGCTGACCAAAACCTACTGAGCAGTC-AAAGTCCAGAGGATCAAAGCTCAACTGGCCAGAAG----AGCAGCTTTGGAAATATCTATCTAT---TCAAGGGGTGTGGG-AAAGCCAGGGCAGTGGTAGGTTGAGTAGGGCAAGACCTCTGACACATGGGCAACAGTGACTTAGGCAAAAGCATGTAAGTGAACAGCTGATAAGGCCATTGTTACTGCTACCACCTCCTGGTAT-CTATGCTTGGGCAGACATTAGGCAGTGGGAACTGAAAAACTGAGGGTTGGAGGGCATTGTAGACAACACAGGACACATCTTAGCAGAAAAGAAAAGACACTCAAATACTTGCTTGTCCTATTAGCTTTGAATGCTCTGTGCCAGGCAAAGAACTTTGGAGCATGGGTAGGGTTCCTGAGAACAGTTGGTGAATAGAGATGGGGTGGGATGGGCACTGCTCCCACAGGCAACACTGGGCT------GAGGATACTAGCAGTGCTACATCTTCCAGATTGCTGAAGAGCAAGTGAAGAACAGGCTTTATTGCACTTTCTCATTCTTAGGAAACAGG---TTGCCCTGCAGAG--TCTCTTGATTTGCAGAAAACACTGCACATCAATGATAAGTTTCAGGCATAATCACAGGTCACCTCTG-CTCTCATGGGAAGGAAAACT--AAGTCCACCAGCTA--GGCTGTTTC---------ACGGGCAGTTTATGTA-CTGGTATCCTTGGACTAGATGGACT--GTCTGGCCAGGTCACTGTTTGGCAGGCAGAATAGCTAACTGGCAGGTGCCTTGG---GAATGTTCTGCACCCACAAGAACTGGGGCAAACTTTCCCAACAGGG-AAACTTCTTGACCAACACATAAGCTCCACAAAGAGGCTAGAGCCATGATGCTCAACTGCAATATGCCTGACTCCTTTTTTCCA-ACTCTGGGTTCAGACCA-CCCAGAGGGGCAGAGATGCTGAGCTGATCTGGGAGGATCCCTGGATCGTGCTCCATAGCATCAAACTGGAGATAACAAAAGGATGTAAGGGGTTGGAAAACAAAAGACCAGTTTAC--ATCAGACATTGATTTTTGAA-AGTCTTTTTGAGCTCAGGAAACTGGAGGCAGATACCATGCAGAAAA-GCCAGCCCGGTTGTCTGTCCATTGGTCTATCCTGAGCAGTTGTGAACATTTCATATATAAATGGGATGGTACCGTTTATGGTTGATCTTTTTCCTACAAGTTGGGCAAGTGTTAGCATTCTTAAGGGAATCACGGAGGCACTGGCTACAGAAGACGTGGCCACATTCTGTAGAAACAATGAGACGCCCATTCTGCACAATCTAGAAGACATT-AAAAGAACAGCCTTTAATAAAGATTTAAAAAAACAAAAAAAAACAAAAAACCAGCCTTAAAGTATCCCCTTTTCTA----------------------------------------CAAGGAGACCAG-TAAAACAAAGGAG---CTGGGTTATACCAGAAAAGGCAGAGGCATATACAACAGTCT----CATTG----------------------------------------------GACAGGACTTCGCCA-AGTGCAGTAGTACAAAGTGATTATGAGGAACCTCAAAAAAAAGCCAGCAGC a score=29983.000000 s hg15.chr4_random 1008502 550 + 1219494 TTTCAGTTAGAGCCAGGATGGGGCACAAAAAAGGAGGACGCATTTGCACCCGGAAGCTCAGGGCATACAGGAGTATAGGGGCTGAAGGTGAAAGTTGTAGGGTCCAAGGAGAAACTGGCACATTCTCCCCTCACAGGCAGATCTGCAATAAGTGACGGCCCAGGCATGACTGTGAGTAGGGGTGTCCAATCCCACCGAGGGGGAAGATCCTGTCTCATCCAATT--CTTTCAGTGAAGTTTA--GAAACCAGAAGCCTGGAAGATACAGCTTGGTTTACTTACCTCTGAGTATCCGTCCATGCAGATGGGACAACTGACAGTACCTGAGGGCCTAAGAGCACAGTGCTTCACGTTAGTTTCTCAGTCAACG-CAAACATTTTATTATACCCTGTCACGTGAGTGGCCCCTATCCCCTACAAGAGTC----CCGTCC--CTGGCCTCCTGACTCTGCC---TTAGCGCGGGCATCCGAGAGACTTTCAGGAAAGCCAACTGCCCCAAGGGCATG--------------TGGGAGGGTGAAC----ATGAGAAGGTG----CACACAACCTG----AGTCACCCTGCC-----CTCC s mm3.chr5 117093348 461 - 149719773 TTCTAGATAGGGCTGGGTTGGAAAACATCG-----------ATTTGCAC---------------------------AAGGGTTAAAGATAAAATGTACAGGGCCCACCACCA-ACTGGCACA--ATCCACTT----------------------------------TGACA-------------------------------------CACACTTTCTCCAAGTACTTTTGAGTAAAGTAGGGCAAAACCAACA-----GGAGAAACAACTAGG-TTACTTACCTCAGAGTATCCATCCATACAGATAGGACAACTGACGGTACCTGAGGGCCTAAAATCACAGTGCTTTGCATCAGTTTTTAAGTAAACTCAAAATACTTGATTAAACCCTGTAAAGCAACC--------TCACATACGC-AGTC-ATATCTTCT--CAAGTCTCTCATTTTTGTTGAGTTAGGACAGGCACCCAAAAAACTTGAAGAGAAATTAACTGCTTGAAGGGCTGGGCTCCAAAAGCCATTGAAAAGGGGAATAAGCAAGAACAGGTC----TAGAAGATGTGGACAAGTAGGCTTGCCCACCTCTTT s rn2.chr14 78889577 451 + 107821284 TTCTAGTTAAAGCTGGAGTGGAAA-CATCA-----------ATTTGCAC---------------------------AAGGGCTAAAGATAAAATGTGC------CACCACCA--CCGACACA---TACACTTGCAAATTAGCCT--------------------CATGACA---------GGTATCAAATTCCACACAATG-------CACAAATCCTCCAAGTTCTTTTGAGTGAAGTAGG---------------------------------TTGCTTACCTCAGAGTATCCATCCATGCAGATCGGACAACTGACGGTGCCCGAGGGCCTAAAATCACAATGCTTTGCATCAGTTTCTAAGT------AAAGTACTCAATTATACCCTGTAAAGCAACT--------TCAAATACAC-AGTCTATATCTTCTACCAAATCTCTCATTTTTGCTGAGTTAGGACAGGCACCCAAAAAAC--AAAGGTAAAGTAACTGT----AGGTTTGGGCTCCAACGGCCATTGAAAAAGGGAAT----GAGAGAAGGTCTAAATAAAAGATGTGGTTAAGTAGGCTTGCCCACCTCTTT a score=81880.000000 s hg15.chr4_random 1009052 1123 + 1219494 CCCAGGCCCCTACCAGCCCCAGGATCCCTGTCTGGGGCCACTGGGA-CTG------TCTGCACACACTGT-GTCAGCGCTTGGCATCCTCTGGTTA--------------------------------CAGTGG-------------GAATAGCTGGACTCAGTTCTGGACCCAGTTCCAACTGTATCCAGAT----GCTGGGTAGAGGCTTGGGCAAGCCCTTCCAGGGCCAAGGGCTCACAGATTTGCTGAAA-----AGTATTCCCATGCCCTGGCCCCACATCCTAGCATGGCGGCAGCAGAGCTGGGGGCACGTTGGTACCTGAGGCCTGTAGCGCCCTCATCCCTGGCGTTTCTGGGAGTATGGGTAGTCACATATACGTCTCTGTCCCTGGACAACTCCTCATCGTCACTGCTCACCACACAGCTGTCAGCATGGTCCTGGGGCAGCCTCCTAGCATTCCTCCTTGGTCTTCTTCTTTCTAAGGTAAGAGGTCACATTTTCAGGTTGGAGGCTCTCTACTCTTACCATCCTCAC-----CACTCCCATCCTGACGCCTCTTAAGACCCTCTTCCTTCCCTGCCTGGGACCCCCAGAGACAAACTGCTGCCATGCTCAGCTATAACC-CAGAAGGTTCTGCCCAGCTCTGGAGGCC---ACTATCTTATCTTCCCAGGAGAAACCCCCCAACCCCTGCTGTGAGCTACCAGCCTTCTCCAAAATCTGGTAGGCCACAAGAAAGGACTATAGCTCAGTGCTCAATGATAGTGGTGAAGTTTCTTCAGCAGGCACAAGGGGGACTGGCTGTGCGGGTCTGACCACAGCATCTGCGAAGG----CATCTTCCTGCTTGGAGCGCTCCAAGCCCTTGG--GGATGGTCTGGCAAGACCTG----CAGCACCGCGGCTCTCACCTATGCCAGTTTCCTCTCCAAACCCAGTG-AAAAAGGAAACGAAACCA-CTCACCGTCAACAATCTTGTAAACAGAAG--------GAGAAAAACAAAAGAGAAAGAAGCAATCAGTTTGATA---TAAGTGATAAATGAAGGCATTTCTTTTTTCTG------ACGTGTGACACCCTCTGTGGAACCCTCTGGTGAGCAGCAGAGGCCCCACCCTCCTCCCACCCACAGAG---------GATCTG--TGCACCTCTCCCAGTCAGTCAAGCCCACTTCCCAAGTCACTCCACCTCCCAGCTGATGTGC s mm3.chr5 117093991 1030 - 149719773 cGCCCACCTCTTTTGCTTCCAGCATTCTTGCTAGTAGCACCTGTAAACACAACCTACTTATAACCACTCC-ATGAGCGAAAAGCACACCCTGGTCA------GTATGTATGGC-CCTG-TCTGTCTGTCAATTGGTCTATCCTGAGCAGACAGCTGAACCCAACCCTGTA-----TTCCAAATATGCCTACCTAGCTGCTTGGAAGATACTTG---------TTCTAGAG-CAAGAGCTTACATACCTGATAGCAAATGCAGAATCTATATACCCTGGCCTCCA--CCCAACACAACAGCAGCAGAGC----------TCTTTACCTGGGTCCAGTAGCTCCATCATCCTTGGTGCTTCGAGGAGTATGGGTAGTCACGTACACATCTTTGTCCCTAGACAGCTCCTCATCATCACTGCTCACCACACAGCTGTCAGCATGGTCTTGGCGCAACCTCCTCCCATTTCTCCTTGGCCTTCTCCTTTCTAAGG-AAAAAGCCACATTTTCAG---------------------CCATCTTCACCTAA-CCCACTTACCCTAGTACTTCTAAAAGCC----TTTCCCTCTGTTTGAGATCTTCAGGGACAAACTGCCACCATAGT-AGCTGTACCCTCAGAAGGTCCTGTCCAGGCACTGAGGCC---AATCACTTGC---CTTATAAGAA-------------------------------------------------------------------GGCTCAGCCCATGGT-ACAATGGCAGAGATT-TTCAGTAAAACCA---------------ACATGTCTGACCA-----------AAGGCATCCATCTTCCTGCCT----------AAGATCTTGGAAGGACAGTCTGACAAAGCCTACATACAATGCTGCGGCATTTATTCATAACAATTT--TCGCTAAACCCAGGGAAAAAAAGAAATGAAACCAGCTTACCTTCAACAATC-TGAAGAGGGTGG--AGAGGGGGAAAAAAAGAGAGATTGTGTTATAAACATCCTGACATTTTATCTGATAAA-----ACACAGCTTGATTCTAATATGTATGTTTGAC--CCTCTCCGAATTCTTTTGG-----------GCTCTCAGTCCTCCCTTTCCCCCAAGAAAGGGAAATGATATA----TACTTCTACAGACCACCTATGGCCA-TCTCCAGGTCAATGCATCC-TGAGTCAATATGC s rn2.chr14 78890015 971 + 107821284 TGCCCACCTCTTTTACTTCCAGCACTGTTGCTAGTGGCACCTGTAA-CAC------CTTATAGCCACCCCCATCTGTGA------CAACCTGGTAACTGTGGATACGTCTGGCTCCTGCTCTATCTACCAACTG-TCTATCCTGAGCAGACAGCTGAGCCCAACCCTGTA-----TTCCCAATGTGCTCACCT----GCTTGGAAGAT-TGTG---------CTCTGGAG-CAAGAGCTAACATACCTGTTTGCATATGCAGTA-------ACCCTGGCCTCTA--CCCAACACAGTAACA-CAGAGC----------ACTTTACCTAAGTCCAGTAGTTCCTTCATCCTTGGTGCTTCGAGGAGTATGGGTAGTCACGTATACATCTTTGTCCTTAGACAGTTCTTCATCATCACTGCTCACCACACAGCTGTCAGCATGGTCTTGGCGCAACCTCCTCCCATTTCTCCTTGGCCTTCTCCTTTCTAAGG-AAAAAGTCACATTTTCAG---------------------CCACCTTCACCTAATCCCATTTACTCTTATGCCTCTGAAGACC-----TTCTCTCCCCTTGAGCTCTCCAGAGAGAAACTGCTA-CATAGT-AGCTCTGCCCTC---AGGTCCTATCAAGGCATAGAGGCCCATCATCACTTGCCTTCTTAGAATAA-------------------------------------------------------------------AGCTCAGCCCCTGGT-AGCATGGCAGAGATT-GTCAGTAAAA-CA---------------GCAAGTCTGACCA-----------AAGG----CATCTTCCTGCCGA---------AAGGTCTTGGAAGGACAGCCTG--------------CAATGCTATGGCATTTATTCATAAC-------------AACCCAGAG-AAAAAAGAAATTAAACCAGCTTACCTTCAACAATC-TGAAGATGGAGGGCAGGGGAGGGAAAAAGAGAAGAGTGTGTTATAAACATTCTGACATTTTCTCTGATAAA-----ACACACCTTGCATCTAGTATATATGTATGGC---------------------------------TTCCCAGTGCTCCCTTACTCCCAGGGAAGGGAGATGATGTACGTGTACTTCTACAGACCACCTATAGACA-TCTCCAGGTCAGTGCATCTGTGAGTCAACATGC a score=625.000000 s hg15.chr4_random 1010175 15 + 1219494 TGTGTCTCTCCCTGC s mm3.chr5 117095021 15 - 149719773 TGAGTCTTATCCTAC a score=2006.000000 s hg15.chr4_random 1004684 33 + 1219494 GCTTCAACTTCTTCCTGCTGGATCTCCTGGTTT s mm3.chr18 33627900 33 + 91041441 GCCTCATCTGCTCCCTGTTGGACCTGCTGGTTT a score=113189.000000 s hg15.chr4_random 1005938 3114 + 1219494 AACTTCCTGAACACACAC-CAATGCAAAATACACTCAACGTGAGGCAGATAAGAACCCCGCACCTTGGCAAAAAGGGGGGAAATTGATTCCAAAGAGCAAATGAATGTGTAAAAGATATTTGGTTCAAATTAATGGTTTTATTTCCATCTGTAACACTAGCAGAGGAGTCCAAAGCAGACTGATATCCATGGATATAGTTTAAATGTAACAAAGAAA-GAGTTGAACTATGTACATTGA--AAAAAGGAAAGACA--TTTCTTCATACCAACCTTTCCCTAGTT-CGCAGTTTCTGAATAGTAGAAACAAAACACATTTTTAAATCTTTCTATCAATTTAATTTAGGACGAAGTAACACAACTTTTATAATTAACCACTGAAGTTGTCTTTAAGGACAAAACTTAAATTTTAAAATGGGTGTTACCATATTTTATGAGTGGACTGACTCCAAGGTTGCCTTGCTCC----AAGTCTGGGCATCGTGACATTG------------CCGTGATGCCCAGAAGAAAGTTAATGGCAATGATGTCCAGTCAGAGGGCAGACATGCTACACATCACAATGATGAGAGCTGCGGATTCTGCCCTCTTCAACTCCAAGTAGAAAA-------TTATTATTTTCATTCAAACTAACTGGAAGTGAGCCAAACAGTTAAAAAGTCAGAATGAAGAATAAAACAATTTTCTTTTCACATAGAGGAGGGACACTCCTTCAGCCCCGTCTAAAGTGAATTCTGTGCTGAGTCCCTGCTCCTTCAGAAGGGTAAACTGAAGGTCAGTTATTGCTAACAAAGCCAGAAGTGGCCCCTTTCCCGCCCTGAAGATGTTTCACACGAAAAGGCCGTTTGTTTGGCGTGAGGCCCTCTGAGGAAGGACGACAGTGGAAGAGGAGGCATGCCGGCACTGTAAGGCCTCTCTCGTTAGCCACCCCCCAGGCCCTGTGCTGTCAGGGGCAGCTTGGGCCACTTTGCTGCCCCTGAGAGAACCTGAGGCTCCCGCGTACCTGTGGAGCGAAGGAGAGGTTGTCATCTGGGCCCC---------------TGTTTCACCAGTCAAAACCTATGGAGCAGTCAGAAGCCCGAAGCATCCAAGCCCAG-TGGCCAGGA--------AGCTTCTGAAATAAACGGCACTGGGTTGGGAAGGATGAGAAA-GCCAAGACAG----------GTGGGCCAGGTTCTCCGAACATGGGGCAACAGTGACCTGGGCAAAAGCCTGGAACTGAGCGGCTGATAAGGCCACAATTACTGCCACCACCTCTCAGTAT-CTACACGGGGGCAGACGTTAGGCAGTGGGAACTGA--------GGACTGGAGGGCG-TGTGGCAAACACGGGATGGATTTTATCAGAAAAGAGAGGACACCCAAACACGTGCCTGCCCTATTTATCTTGCATGTCCTGTGCCAGGTGAAGGACGCTGGAGCATGGGTAAGGTTCCTGAGAACAACTGGTGGGCAGAAACGGGCTGGGATGGGCACTGCTCC-ACAGGCAACATTAAGCCTCTGAGGGGGACACTAATAGTGCTACATCTTGTGGGCTGCTGAAAAGTAGGTAACGAATGGCCTTTATTGCACTTTTTCGTTCTTAGGAAACAGGGGAGTGCCCTGCAGAGTTTCTCTTGATTTGCAGAAATCACTGCAGATCAATGATAAGGTGCAGGCAGAATCACGGGTGACCTCTGACTCTCAAGGGAAGAAGTCCAGTGATTGGTCTTTCCAGGGCCTCAAGGGGCCACTCTTCAACCTGGGATCCTCGAGCTGGGTGAACCGGGTCTGGCTTGGTCAATGTGTGGCAGGCAGATTGGTCGACCGGCAGACACTTGGGACAAAAGGTGGTGTGCCCGGGAAAGCTGGGGCAAACTTTCCAAACAGGGAAAATTTCTTGGCAAATGTGCAGATTCTGCAACCAGACTGGAACCACGAT------TCCCAATGCGCCTGACTCCCTTTCTCCC-ACTCTAGAACTGGACCACCC-------CAGAGGAACAGAGATGGCCTGGGAGGG-CCCTGGGTCCAGCGCCATAGCATCAAACTGGAGATAACAAAAGGA----AGGGGTTGGAAA-CAAAAGAGCAGTTTACATATCAGATGTTGGTTTCGAAACAGTCTTTTTGATCTCAGGAAAATGGAGGCAGATACCACTGGAGAA----CCTGGCTGTCTGTCTGTCCATCCGTCTCTCCTGGGGGGCTCTGAATACTTCATATATAAATGGGGTGGTACCGTTTGTGGTTGATCTTTTTCCTACAAGTTGGGCAAGTATTAGCATTCTTCAGGGAATCACGGAGGCACTGGCTACAGAAGACATGGCCGCATTCTGTGGAAACGATGAGACGTCCATTCTGCACGATCTAGAAGGCATTAAAAAGAAGAGCCTCCGAGTTTGCCCTTGTCCCAGAGCAGCCATGGGGCCAGAGAATCCCACCCACCTATGCCTAAGATGACTAATTAAAGGAAAGCAAGGGCCAGGCTACAACAGGG--------------AGGGGTCTGGAGAGCTAACTGTGTCTGCTGTGGTCTCTCTCAGCTGGAGAGCAGGAGGCAGGGGCCATGGCATCTCAACAGTGTGACAGCCCAAGAGGGTTATGAGGGACCCCAGTAAACACT-AGCAGCTTTCAGTTAGAGCCAGGATGGGGCACAAAAAAGGAGGACGCATTTGCACCCGGAAGCTCAGGGCATACAGGAGTATAGGGGCTGAAGGTGAAAGTTGTAGGGTCCAAGGAGAAACTGGCACATTCTCCCCTCACAGGCAGATCTGCAATAAGTGACGGCCCAGGCATGACTGTGAGTAGGGGTGTCCAATCCCACCGAGGGGGAAGATCCTGTCTCATCCAATTCTTTC-AGTGAAGTTTAG--AAACCAGAAGCCTGGAAGATACAGCTTGGTTTACTTACCTCTGAGTATCCGTCCATGCAGATGGGACAACTGACAGTACCTGAGGGCCTAAGAGCACAGTGCTTCACGTTAGTTTCTCAGTCAACGC-AAACATTTTATTATACCCTGTCACGTGAGTGGCCCCTATCCCCTACAAGAGTCCCGTCCCTGGCCTCCTGACTCTGCC---TTAGCGCGGGCATCCGAGAGACTTTCAGGAAAGCCAACTGCCCCAAGGGCATG--------------TGGGAGGGTGAACATG-------------AGAAGGTGCACACAACCTGAGTCACCCTGCCCTCC s mm3.chr5 117090818 2991 - 149719773 AAATTCTCCAACCCACACACAGTACAAGTCACACTGAATGAACAGCA-----------CACACCTTAGCTAAAAGG-----------TTCCAAAGAATAACTGAATAAATGAAAGATACTTAGTTCAAATT----GTTTTATTTCCATCTTTAATACTAG--------TCCAAAACAGACTGATACCCATGAGCATAGTTTAAATGTAACAAAGAAAAGAGTTAAACTATATACATTAAGTAAAAAGGAAAGAAAATCTTTTCTATACCAATCTTTCCCTATTAATGCAGTGTCTGATTAGAAGAA--------------CACATCTTTTTCTCAATTTAATTTAGGATAAAGTAATAGAACTTTTATGATCAACTTCATACACCGTCCTTGAGGAGAAAAC--AAATTTTTAAGTGGGTGTTACCACATTTACTG-GTGAACTGGCTGCATGGTTGCCTTGTCTCTTTGAAGTCTGGCTTTCATTAGACTAACAAGACCAAGTCCATGAGGCCCACAAAGAAATCAATGGCTGTGACATCCAAG-GGGGAGAGGAGAGCACACACATCACAATGATGAGAGCTAATGCTCTTACCCTCT--GAGTCCATGTAGAAAAAAAAAACCTATTACTCTCATTCAAACTAACTGAA-----GTCAAACAGCTAGAAAGTCAGAATGAAGAATAAAACTATTTTCTTTTCACATAGAGGAGGGCCACTCCTTCAGCTCCATTTAAAGTGAATTCTGTGCTGAGTCCCTGCTCCTTCAGAACATTACACTGAAAGTCAGTTATTGCTAGCAAAGCTC-CAGTGGTCCCTTTCCCACCTCAAAGATGTTTCACACAAAAAGGCTATTGGTTTGGCTTGAAGCCCTCTGAGGAAGTAGT---GTGGAGGTGGAGGCAGGCTGGCATT-CAAGGCCTATCCTCTACAAGCCGCCCTGTGCCTGGTGTCCCCAGGGGCAATTTT--CCAC----CTGTCTCCGTGAGCACCAGAGTCTCCCAC--ACATATACGGTGGAGCAGACATTGTTATGTGGTCCCACTGGAAGAGGCACCATGCTTTGCTGACCAAAACCCACTGAGCAGTCAAAAGTCCAGAGGATCAAAGCTCAACTGGCTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTAT---TCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCAACACCTCTGACAAATGGGCAACGGTGACTTGGGCAAAAGCATGTAAGTGAACAGCTGATAAGGCCATTGCTACTGCTACCACCTCCTATTATACTATGCTTGAGCAGACATTAGGCAGTGGGAACTGAAAAACTGAGGGTTGGAGGGCACTGTAGACAACACAGGACCCATCTTAGCATTAAAGAGAGGACACTCAAACAC----TTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAGCATGGGTAGGGTTCCTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCGACACTGGGCT------GAGGATACCAGCAGTGCTACAGCTTCCAGATTGCTGAAGAGCAGGTGAAGAACGGGTTTTATTGCACTTTCTCATTCTTAGGGAACAGG--ATCGTCCTGCAGAGT--CACTGGATTTGCAGAAAACACTGCACACCAATGATGAGTTTCAGGCGGAATCATAGGTCACCTCTG-CTCTCGTGGGAAGGAAACTAAAAGTCCACCTTTTCGTGGCTTTTCGTGGGCAGCTCATGCACTGGTATCCTTGGGCTATTTGGGCTG--TCTGGCCAGGTCACTGTCTGGCAGGCAGAACAGCTAACTGACAGGTGCCTTGGG---AAGGTTCTGCACACACAAGAGCTGGGGCAAACTTTCCCAACAGGGAAA-CTACTTGGCCAACATGTAAGCTCCATAAAGAGGCTGGAGCCATGATGCTCAACCCCAATATGCCCGACTCCTTTTTTCCCTACTCTGGGCTCAGACCACCCAAAGGGGCAGTGATGCTGAGCTGATCTAGGAGGATCCCTGGACCGTGCTCCATAGCATCAAAC--GAGATAACAAAAGGATCTAAGGGGTTGGAAAACAAAAGACCAGTTTACAT--CAGACATTGATTTTTGAA-AGTCTTTTTGAGCTCAGGAAACTGGAGGCAGATACCA-TGCAGAAAAGGCCAGCCTGGCTGTCTGTCCATTGGTCTATCCTGAGCAGTTGTGAACATTTCATATATAAATGGGGTGGTACCGCTTATGGTTGATCTTTTTCCTACAAGTTGGGCAAGTGTTAGCATTCTTAAGGGAATCACGGAGGCACTGGCTACAGAAGACGTGGCCACATTCTGTAGAAACAATGAGACGCCCATTCTGCACAATCTAGAAGACATT-AAAAGAACAGCCTTAAAGTAT-CCCTTTTTCTA---------------CAAAGACCCGAACCCACCCATCACCAAAGAGAC-AAGTGAAACAAAGAAGGGCCTGGGTTGTATCAGAAAAAGCAGTACACTCAAGAGTTTTGAACGCTGTCTGTGT-------------------------GACAGGTGACAGA---CAGGACTTCCCCA-GGTGCAGCAGTACAAAGTGGCTATGGGGAACCTCAGAAAAAAATCAGCAGCTTCTAGATAGGGCTGGGTTGGAAAACATCG-----------ATTTGCAC---------------------------AAGGGTTAAAGATAAAATGTACAGGGCCCAC-CACCAACTGGCACAATCCACTTTGACACACA----------------------------------------------------------------------CTTTCTC--CAAGTACTTTTGAGTAAAGTAGGGCAAAACCAACA-----GGAGAAACAACTAGG-TTACTTACCTCAGAGTATCCATCCATACAGATAGGACAACTGACGGTACCTGAGGGCCTAAAATCACAGTGCTTTGCATCAGTTTTTAAGTAAACTCAAAATACTTGATTAAACCCTGTAAAGCAA------CCTCACATACGCAGTCATATCTTCTCAAGTCTCTCATTTTTGTTGAGTTAGGACAGGCACCCAAAAAACTTGAAGAGAAATTAACTGCTTGAAGGGCTGGGCTCCAAAAGCCATTGAAAAGGGGAATAAGCAAGAACAGGTCTAGAAGATGTGGACAAGTAGGCTTGCCCACCTCTTT a score=21283.000000 s hg15.chr4_random 1009052 1138 + 1219494 CCCAGGCCCCTACCAGCCCCAGGATCCCTGTCTGGGGCCACTGGGA-------CTGTCTGCACACACTGTGTCAGCGCTTGGCATCCTCTGGTTA------------------------CAGTGGG-------------AATAGCTGGACTCAGTTCTGGACCCAGTTCCAACTG----TATCCAGATGCTGGGTAGAGGCTTGGGCAAGCCCTTCCAGGGCCAAGGGCTCACAGATTTGCTGAAAAGT-----ATTCCCATGCCCTGGCCCCACATCCTAGCATGGCGGCAGCAGAGCTGGGGGCACGTTGGTACCTGAGGCCTGTAGCGCCCTCATCCCTGGCGTTTCTGGGAGTATGGGTAGTCACATATACGTCTCTGTCCCTGGACAACTCCTCATCGTCACTGCTCACCACACAGCTGTCAGCATGGTCCTGGGGCAGCCTCCTAGCATTCCTCCTTGGTCTTCTTCTTTCTAAGGTAAGAGGTCACATTTTCAGGTTGGAGGCTCTCTACTCTTACCATCCTCACCACTCCC----ATCCTGACGCCTCTTAAGACCCTCTTCCTTCCCTGCCTGGGACCCCCAGAGACAAACTGCTGCCATGCTCAGCTATAACC-CAGAAGGTTCTGCCCAGCTCTGGAGGCCACTATCTTATCTTCCCAGGAGAAACCCCCCAACCCCTGCTGTGAGCTACCAGCCTTCTCCAAAATCTGGTAGGCCACAAGAAAGGACTATAGCTCAGTGCTCAATGATAGTGGTGAAGTTTCTTCAGCAGGCACAAGGGGGACTGGCTGTGCGGGTCTGACCACA-GCATCTGCGAAGGCATCTTCCTGCTTGGAGCGCTCCAAGCCCTTGG--GGATGGTCTGGCAAGACC----TGCAGCACCGCGGCTCTCACCTATGCCAGTTTCCTCTCCAAACCCAGTG-AAAAAGGAAACGAAACCA-CTCACCGTCAACAATCT------TGTAAACAGAAGGAGAAAAACAAAAGAGAAAGAAGCAATCAGTTTGATA---TAAGTGATAAATGAAGGCATTTCTTTTTTCTGACGTGTG----ACACCCTCTGTGGAACCCTCTGGTGAGCAGCAGAGGCCCCACCCTCCTCCCACCCACAGAGGATCTGTGCACCTCTCCCAGTCAGTCAAGCCCACTTCCCAAGTCACTCCACCTCCCAGCTGATGTGCTGTGTCTCTCCCTGC s mm3.chr5 117093991 1045 - 149719773 cGCCCACCTCTTTTGCTTCCAGCATTCTTGCTAGTAGCACCTGTAAACACAACCTACTTATAACCACTCCATGAGCGAAAAGCACACCCTGGTCAGTATGTATGGCCCTGTCTGTCTGTCAATTGGTCTATCCTGAGCAGACAGCTGAACCCAACCCTGTA-----TTCCAAATATGCCTACCTAGCTGCTTGGAAGATACTTG---------TTCTAGAG-CAAGAGCTTACATACCTGATAGCAAATGCAGAATCTATATACCCTGGCCTC-CA-CCCAACACAACAGCAGCAGAGC----------TCTTTACCTGGGTCCAGTAGCTCCATCATCCTTGGTGCTTCGAGGAGTATGGGTAGTCACGTACACATCTTTGTCCCTAGACAGCTCCTCATCATCACTGCTCACCACACAGCTGTCAGCATGGTCTTGGCGCAACCTCCTCCCATTTCTCCTTGGCCTTCTCCTTTCTAAGG-AAAAAGCCACATTTTCAG---------------------CCATCTTCACCTAACCCACTTACCCTAGTACTTC-TAAAAGCCTTTCCCT---CTGTTTGAGATCTTCAGGGACAAACTGCCACCATAGT-AGCTGTACCCTCAGAAGGTCCTGTCCAGGCACTGAGGCCAATCACTTGCCTT--------------------------------------------------------------ATAAGAAGGCTC---AGCCCATGGTACAATGGCAGAGA-------TTTTCAGTAAAACCAA---------------CATGTCTGACCAAAGGCATC--------CATCTTCCTGC----------CTAAGATCTTGGAAGGACAGTCTGACAAAGCCTACATACAATGCTGCGGCATTTATTCATAACAATTT--TCGCTAAACCCAGGGAAAAAAAGAAATGAAACCAGCTTACCTTCAACAATCTGAAGAGGGTGGAGAGGGGGAAAAAAA-GAGAGATTGTGTTATAAACATCCTGACATTTTATCTGATAAA-----ACACAGCTTGATTCTAATATGTATGTTTGACCCTCTCCGAATTCTTTTGG---GC-TCTCAGTCCTCCCTTTCCCCCAAGAAAGGGAAATGATATATACTTCTACAGACCACCTATGGCCA-TCTCCAGGTCAATGCATC-CTGAGTCAATATGCTGAGTCTTATCCTAC a score=8606.000000 s hg15.chr4_random 1014702 161 + 1219494 GGAAATTTAAGAAAAACAGCCTAAGTAACATTTTCAATAACCTTCCCCTTAAAGAATCTCGATTCCTTAAAGAGAGTTGC----CAGTCTCTTT---TCTACCA-CTGCATTGCTTCTAGCCAGAGCAGAGACTGGCATACTGAAAATGCTCATGAAAAGTGACCCAAg s mm3.chr18 33628720 156 + 91041441 GAAAATTTCATAGAAAGAGCAAGGGTCACA----CAGAGAGCATTCTAT--GAGCATCTAATTTCCTC-AGGAGAATTGCACTTCAGCCCTTTTGTCTTTGTGAGCTGCACCATGGCTAGCAAGAACAAGCACTGG-ATA---AAAAAGATC--AGGAAGGGAGCCAAG s rn2.chr18 24176965 140 - 82509072 GAAAATTTCATAGAAAGAATAGGGGT--CA----CAGAGTGCATTCTCT--GCTCACCAAGT--------------TTGCACTTCAGCCCTTTTGTCTTTGTGAGCTGCATCATGGCTAGCAAGAACAAGCATTGG-AT----AACAAGAGC--GAGAAGGGAGCCAAG a score=1391.000000 s hg15.chr4_random 1015208 43 + 1219494 AAAAAAAAAAAAGATTATTTGCTGTTAAAAAGCAACCAAGGAg s mm3.chr8 67837393 41 - 128923138 AAGAAGAAAAGGGTTGATCTATTTTCTAAGAATGACT--GGTA s rn2.chr16 28914331 38 + 84226546 AAGAAGTAAGTGGTCAATCCACTTCCTAAG---GACT--GTTA a score=2196.000000 s hg15.chr4_random 1015554 36 + 1219494 TGGTTTG----CTTTGTTCTAGTTCAATTTTTTCAACGAT s mm3.chr8 67837434 40 - 128923138 TGATATGAAATCTCTGCTAATGTTCAATATTAGAAACACT s rn2.chr16 28914369 37 + 84226546 TGATGTGAAATC---ACCTATGTTCAATATTAGAAATACT a score=2270.000000 s hg15.chr4_random 1015590 13 + 1219494 TTAAAAAGTTTAT s mm3.chr3 73517823 13 - 160674399 TTAACAAGTTAAC s rn2.chr2 74166499 12 - 246339213 -TAACAAGTTAAC a score=34701.000000 s hg15.chr4_random 1015603 177 + 1219494 AGGACTCAAGGAACCAAAACTGTATCTGATGGCCTCAAGGGT--TATGTTTGAAGG----CTTGCTGACTTGC--------------------AGAAAACTCAAGCTGACTGTTCAAGATGTTCAGGGCAAAAACTGCCTAGC----TTCCAT-GCGTGGGTCTTACCCATGACAAAATGTGTTGTGTGATTTAAAAATGGCAGACCA s mm3.chr10 15493882 205 - 130738012 AGGACTCAAGGAACCAAAATTGCCTCTGATGGCCTCAAGGGTCGTGTGTTTGAAGTGAGCCTTGCTGATCTACAGAATGATGAAGTTGCATTTAGAAAATTCAAGCTAATCACTGAGGACGTTCAGGGCAAAAACTGACTAACT---TTCCATAGTATGGATCTTACCCATGACAACATGTGCTCCATGATCAAGAAATGGCAGACCA s rn2.chr11 78844809 208 - 88445885 AGGACTCAAGGAACCAAAATTGCATCAGATGGCCTCAAGGGTCGTGTGTTCGAAGTGAGTCTTGCAGATCTACAGAACGATGAAGTTGCATTTAGAAAGTTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGTCTGACTAACTTCCATGGCATGGATCTTACCCGGGACAAAATGTGCTCCATGGTCAAAAAGTGGCAGACCA a score=22015.000000 s hg15.chr4_random 1016010 94 + 1219494 AGACCATGATTGAAGCTCATGTTGATGTCTAGACTACCAATGGTT-------------------------------------------------------AAAGAAAACCT-----CAGCACCAACAGGTCT--------------AAGATGATGGAAATCATGACCC s mm3.chr3 73520034 168 - 160674399 AGACCATGATCGAAGCTCACGTTGATGTCAAGACGACCGATGGGTATTTGCTCCGACTTTTCTGTGTTGGCTTCACTAAGAAACGCAACAACCAGATAAGAAAGACATCCTATGCGCAGCACCAGCAAGTCCGCCAGATCCGGAAGAAGATGATGGAAATCATGACCC s rn2.chr2 74168608 168 - 246339213 AGACCATGATTGAAGCTCATGTTGATGTGAAGACGACCGATGGGTATTTGCTCCGACTTTTCTGTGTTGGTTTCACTAAGAAACGTAACAACCAGATTAGAAAGACATCCTATGCGCAGCACCAGCAGGTCCGCCAGATCCGCAAGAAGATGATGGAGATCATGACCC a score=43332.000000 s hg15.chr4_random 1016402 230 + 1219494 GAGAGATGCAGACAAATAACTTGAAAGAAGTGGTGGAGAAAATTATTCCAGACAGCACTGGAGAAGACACAGA-AATGCCTGCAAATCTATTTATCCGCTCCACGATGTCTTCTCTGTGAGGAAAGTTAAAATGCTAAAAACACTCAGGTTTGCATTGGGAAAACGTAGGGAGCTTTGTGGTGAAGACAGCAGTTCTGGAAAAGCTACTGG-GATGAGCTAGGTACTAAAGT s mm3.chr14 37093534 229 - 115844145 GAGAGGTGCAGACCAATGACTTGAAGGAAGTAGTTAATAAACTGATTCCAGACAGCATTGGGAAAGACATAGAAAAGGCTTGCCAGTCCATTTATCCTCTCCATGACGTCTT---TGTTAGAAAAGTTAAAATGCTGAAGAAACCCAAGTCTGAATTGGGCAAGCTCATGGAGCTGCATGGGGAAGGCGGCAGCTCTGGCAAAGCAGCTGGAGACGAGACGGGTGCTAAGGT s rn2.chr11 78845179 229 - 88445885 GAGAAGTGCAGACAAATGACTTGAAGGAAGTAGTTAGTAAACTGATTTCAGACAGCATTGGGAAAGACATAGAGAAGGCTTGCCAGTCCATCTATCCTCTCCATGATGTTTT---TGTTAGGAAAGTCAAAATGCTGAAGAAACCCAAGTTTGAATTGGGAAAACTCATGGAGCTCCATGGTGAAGGCGGTAGTTCTGGCAAAACAACTGGTGATGAGACAGGTGCTAAGGT a score=946.000000 s hg15.chr4_random 1016638 16 + 1219494 TCCTATTTATGATGAA s mm3.chr2 131339100 16 - 181423755 AGCTGACAGAGATGAA s rn2.chr11 78845414 16 - 88445885 AGCTGATGGCTATGAA a score=77.000000 s hg15.chr4_random 1016654 40 + 1219494 AAAA---GTTTATATACGAAAGTTGCATA---------AAAAAAAGCTATGT s mm3.chr7 53273736 52 - 134401573 AGAATCCATTTAAAAGCCAGATTTTTATAGTGACAAATAAAAAGTCCTATTT a score=9889.000000 s hg15.chr4_random 1017207 150 + 1219494 AGCtataaaacaaagaagttttaaacaggcacttca----caaaagagaaaaataaacatgaaaaggtgtttgatcccatttgtaataaaaaagcacaaattaaaaccacaatgagacaccactggacaagcatcagaatggctaaaattaaaa s mm3.chr2 34945360 121 + 181423755 AATTACAAAAGAA--ACATCATAGACAACGCATTCAGCTTTAAAAGAAATAGACAAACAGAAACA-------------------AA--AAGAAGCATAA---GAGACTAAAAGGAGACA-------GCAAAGATCAGAAGGTGTTGAGCTAGAA s rn2.chr3 152783253 122 - 165924081 TGTTACAAAAGAA--AAGTCATGaactgagcattcagctttaaaa-aaatagaaaaacagaaaca-------------------aacaaaaaagctgaa---gagactaaaaggagaca-------gcaaagatcagaaggtgttgagctaaaa a score=77462.000000 s hg15.chr4_random 1072484 658 + 1219494 GGAAAACTGTCATTAGCTGAAAAAAATAAACCCAGCACCTAGGACAATAAATACATGCCATACACTCCCAAATAGATGACGAGTCTCCAATTTGTTTTCTGCCTCTTAGGAGCTTATAAAACTAAAGTTCACAATTAA------------------------------------------TGGGGAAGGGAGGAGACAGATGA--------------------------------TCTTCATTGCCTTAGTTATAAACTTGCTTTGGTCTATGGTGATCCTGTGTTAAACTGTG---AAATAGAATCTATCATCCTGGCTCTCTGAGGCCCTTGACTTCACCCTTTTAGTGCTTTTCTTACTTATTTTCAAACCTTCACCTCTCTC-ACATTGAAAACCCCAACTCTTAATACCCTCTCTAAAAAACTACCCCTT-CCCACCAACCACCACCACCACCGACCTCACTCTATCATCTAAATCTGTTTCAAGATATAAAAATCTTGGTAATTTAGATCTTAACACAAATTGCCTACTACCTTTTCAAAAAGCAAGTTAAGCCTGATTCTAATTGTGGGATGAAAAGTTTTTTCCCTAGGAAGAAATTTTAAATATCATCAAGCATGTTGAGAGGTGCTAGCGAGGGCATGGAGCAAGGAATCAAATTCCATAGGTGATTGTTTTCTCTCTCTTTGTATAAAAATGTCCTTGCCCCAATTAAAGCCTCCACCAAGTATAA s mm3.chr4 18924563 712 + 152921959 GGAAAAGCATTACTATGAAACAAAAATTAAAGTAAAACCTAAGACAGCAAGT--------TATATAGTCAAATAGATGAGGGATCTTGCACTTGCTCTCTGCTTTGAGGGGTTTAACAAGGTAGACACTAACAATGAGAAAGAGGAGAAAGCTAGTCAGAAGAGTGCAGAGCATGAGCATTCAGAAGATGAACAGAAAGGAGAGAGATTTCCCCCTATATAGACAGGGGGAAACATCTTCATATCCTTAATTGTGACCACTCTGTGGTCTAGCCTGACCCATGAATGAATAATGAGGAATCAAAGTTCATCACCTTA--TCACATGAATCCTCCATTTCTCCCTGCTAATATTTCTCTTACTTGTTTTCAGGCTCTCTTTCTGCCCTTTAGTGAAATCCCACCTTCTTGTCATGCCCTTGATCATCTTACCCCTTACCTACCAAACACCACT--------CCTTACTACAGTATCTAAGTCTGCAGCAGGAAATAAAAG-CTTGTCAATATATATCTCAACAGCAATTACCTACTG-CTTCTCTAAAACCAAGGCACGCCTAATTCTATTTATAAAATAAAAGGCTTTTCTTCTCTAAGGAAATTTTAAATGTCACCACACACCTGAGAAAATGCTGG-AAGGGC---TAGAATGGAATCAAACTCCACAGACAATTGTTTCCT-TCTATTTGTAAAAACGATTTATTTTCCTAGTCAAAGCCTTCAACAAGAACAA s rn2.chr5 40525824 695 + 191625135 GGAAAAGTGTTATTACGAAGCAAAACTTAAAGTAGAACCCAGGATAAGGAAT--------TATACAGCCAAATAGATTGG---CCTTGTGTTTGTTCTCTGTCTTTGGGTGCTTTACAAGGTAGAGGCGAACAGTAAAAAAGAGAAGAAAGCTAGACTGAAGAGTGCAGAACATGAGCATTCAGAAAATGAAGAGAAAGAAGAAATATTTCCCCCTGTCTA--------------TCTTCAGATCCTTAATTTTAACCACTCTGTGGTCTAGCCTAACCCACTAATGAATCATGAGTAGTCACAATTCATTGCCTTA--TCTCATGCATCCTTGGTTTCTCCCTGCTAATACTTTTCTTTCTTGTTTTCAGACCTTCTTTCTGCTCTTTAGTGAAATCCCACCTTCTTGTCATGCCCTCAGTCATCTCACCCCTGACCTACCAAACACCACT--------CCTTAGCCCAGTATCTAAGTCTGCAGCAGGAAATAAAAG-CTCGTCAATATGTATCTTAATACCAATTACCTACTG-CTTCTCCAAAACCTAGGTAAGCCTAATTCTATTTATAAAATAAAAGGCTTTTCTTCTCTAAGGGAATTTTAAATGTCACCACACACCTGAGAAAGTGCTGG-AAGGGC---TAGAATGGAATCAAACTCCACAGATAATTGTTTCCT-TCTATTTGTAAAAACGATTTATTGCCCTAGTCAGAGCCTCCAACAGGAACAA a score=109780.000000 s hg15.chr4_random 1082602 624 + 1219494 TCAGTCTTTGAG--TATAAAGACATCCATAGCAGGCTTT-ATCCAGCCAGCTTCTTTGGGATTCTTTATAGGGTTTCAGGTCTATAGCATATCCACTAAAATATTCCTACTTCAAAAGGCAATAAAGTAAGTGGTATTATCATTCTTCAAAAAGTTATAATGGTAGTGTAGGCATTCATAGTATGATTTAGTT----CATTTGCTACTGTTTCTATTCTATCACCATATTAAC----ACTTTCCTACACAATTCTATATTCAGCTGGGTTTCAGTTGAGCACAAAGTCATCCTTGTACTACCACCGATAGCTGGCACTAGCTCTTTGATA-CTGTTATCATTCTGCTGTAGAAAGTACCCGTGAACTGGAAA-AAGTCCACAATAGAATAGCTAGTCATTCAACACTATCAAATTT----------------------TAGGTGACTTTTTGAAAAGATAGTATCTCTTGTTGCAAGAAATGGTCCATCTGTGATTTCAAGTCTCTCGCTTGAGTGAATTGGATGGAAGTGGTGAATTTCAGCCAAAGTGGCCAAAGAAATCCTGTTCCTGTGATAATG-ACGCCATCAGCC-TCTGCACCTCTGTCTTCCCTTCTGCCACATGTTGCCTGTTCTCCGTGACTTTGGTAAGAGCTTCCTTG s mm3.chr13 110334242 652 + 116242670 TCGATCTCTGAGACTAAAAAGGCATCCACAGCAGGCTTTTATCCAGCCAGCTTCTTTGAGACTCTTCATGGGTTTTGAGGTCTACAAAGTATACACTAATATACCCATACTTCAAAAAGCAATAAGGCAAATAGTATAATCATTATCC-AAAAGTTACAATGGTAGTGTAGGCATACATAGTATAATTTAGTTACAAAGTGTGGTACTGTTTCTGCTACATAGCCATATTAACTGCTTCTTTCCTACATAATTATATATCCAGCCGG-TTTCGGCTGAACACAAAGCCGTCCTTGTACCACC---TAGAGTTGGCAACAGCTCTGAGAAGGCAGGTTTTGTTCTGCTGTGGAAATTATCGTTCAACTGAAAACAAGAGCGCGGTCCCATGTGCAGTCATTAGACGCTGTCGTATTTGTGAAGCGCCTCTTCCAACTTCTGGGTCACTTTTTGGAAAAATATTATTTGTTGTTGTAAAAAATGTTGCATCTGTGATTTAAAGTCTCTTACT----CTAATTTGATGGAAGTGATGAATCTCGGCCAACGTGGCGAAGGAAATAGTGTTACAGCGGTCTTGAATGCCGTCAGCTTTTTGGACCTCCATCTTCCCTTCTTCCACGTGTCGCCTACTCTCCTTTACTTTGGTAAGAGCTCCTGTG s rn2.chr2 41364907 652 + 246339213 TCGATCTATGAGACTAAAAAGGCATCCTCAGCAGGCTTC-ATCCAGCCAGCTTCTTTGAGACTCTTCATGGGCTTTGAGGTCTACAAAGTACACACTAATATACCCATACTTCAAAA-GCAATAAGGCAAATAGTATAATCATTATC--AAAAGTTACAATAGTAGTGTGGGCATACATAGTATAATTTAGTTACAAAGTGTGGTACTGTTTCTGCTACATAACCATATTAACTGCTTCTCTCCTACGTAATTATATATCCAGCCGGGTTTCAGTTGAACACAAAACCGTCCTGGTACCACCGCCTATAGTTGGCAATAGCTCTTAGAAAGCAGTTTCTGCTCTGCTGTAGAAATTATCCTTGAACTGAAAACAGATGTGCG-TCCCATGTGCAGCCATCAGACGCTGTCATATTTATGAAGAGCTTCTTCCAACTTCTGTGTCACTTTTTGGAAAAATATTATTTGTTGTTGTAAAAAATGCTGCATCTGTGATTTAAAGTCTCTTACT----CTAATTTGATGGAAGTGATGAATCTCGGCCAACGTGGCGAAGGAAATAGTGTTACAGCGGTCTTGAATGCCGTCGGCCTTTTGGACCTCCATCTTCCCTTCTTCCACGTGTCGTCTACTCTCCTTTACTTTGGTAAGAGCTCCTGCA a score=63324.000000 s hg15.chr4_random 1083226 333 + 1219494 TGTATGAGGATGATGTCCAGGATGTTGGTCTGGTGTCCCTGAGACAGCACTAACAGGTCCATGGCTGGGTCCAGGTCCTTCCTGGACTCATTGGCAAAGAGCTTACTGATGTTCTTGAAGGCATCTCTGGTGAAGTGGATGGC---------------------------CTAGTCTAGTTCCAAGGCCTGGCTGAGGCTGAAGAAAAACTGG-CCACCCTCTCCCCCTCTTTCTAAAAGCCTGTCACTGTAATATGCTTGCTTGTCAACTCATTGGCTGTGAGGATGAGCTG-AGTGGCCTGT-GTCCATCTTCTTGAGGAAGCATTTGAAGCCATCAGTCTTGCTCTCCCACCCCTAAAGG s mm3.chr13 110359197 357 + 116242670 TGAACATGGATGATGTCTGGGAAGTTGGCCAGGTGCCCCTGATACAGTGCTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGGGCTGCTCAGCGAAGAGTTCGCCGATGGCGTCGTAGGCGTCTCCAGTGAAGGCAATGGCCTGATTCAGACCCACGGAGAAGGCCTGCTGATCCAGCTCAAAGGCTTGGCTGAGACCCCGGAAGGACTGGCCCACCTTCTGATACTCCTTCTTGAAGCCAGTCACC------TGCTTGCGCGCAAACTCGTTGGCGGTGTGGTTGAGCTGCAACGCACTGTCGTCCATCTTCTTGGTGAAGCATTTGAAGCCATCTATCTTGCTCTCCACCTCCTGCAGG s rn2.chr2 41387185 357 + 246339213 TGAACATGGATGATGTCTGGGAAGTTGGCCAGGTGCCCCTGATACAGTGCTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGGGCTGCTCAGCGAAGAGTTCACCGATGGCATCATAGGCGTCTCCGGTGAAGGCAATGGCCTGATTCAGACCCACGGAGAAGGCCTGCTGATCCAGCTCAAAGGCTTGGCTGAGGCCCCGAAAGGACTGGCCCACCTTCTGATACTCCTTCTTGAAGCCAGTCACC------TGCTTGCGCGCAAACTCGTTGGCAGTGTGGTTGAGCTGCAACGCGCTGTCATCCATCTTCTTGGTGAAGCATTTGAAGCCATCGATCTTGCTTTCCACCTCCTGCAGG a score=7007.000000 s hg15.chr4_random 1085419 42 + 1219494 GCAATGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT s mm3.chr10 125423017 42 + 130738012 GCAGCAGCTGAAATGTCTGTTTAATGTGTTCAATCTAGCTGT s rn2.chr7 81328031 42 - 139049774 GCAGCAGCTGAAATGTCTGTTTAATGTGTTCAGTCTAGCTGT a score=2061.000000 s hg15.chr4_random 1085461 183 + 1219494 TGTTTTCTGCTAGATTCTATGGAGTCTCTTTTTATGAATGTGAAATGTAGCAGCCATCA--TATATCTGAATGAAGTTTAAGTGCTGATTTTAGATTTTTACTCTGTGACATTCTCCTCTGTGACTTTCAGTTGTGTGAGATGTCCTCCCATGTCATTCAAATTTCCCAGTTCTTCTTTTCTGTC s mm3.chr16 23003882 177 - 98986639 TGATTTCTACATGGATAGGTGGAATCT---TGTCTGCAGGCGCAGTTTAG-AGACTTCACGTATTTCCAGATGGAGTTTACCTTTGGTTCTTGG--CTCTACTCTGATTCATTC-CTGGTGTGATATGCACTTCCATTGGATTCCATCCCATTTCTCTCCA-TTCCTCAGATTGGTAGTTCTGTC a score=141883.000000 s hg15.chr4_random 1085644 1509 + 1219494 AGCCTGGAACTCTGTACTCTTATTCCTCAAGCTAGTAAAACTCACCGCTTTACTCTTAGACATCTAATTTTGCACAGACTGGGAAGTGTCATCAGGTGTGAAGTTACATTGATGCAAATTTAAATCATTGCAA-TTTTCTTTATTCAATGGTCAAATACTTC-ATCAGTGGTTGAATATTCTACTATTTCTGCCTGTTTTCTGTTTCTCATTACCATCAAATGTGTATTTAATTTTTTTTAGAGTTAATAGTTTTTTTCCCTGCATTTGAGTTAGACCTGAGCTACTACCACATTTTGTAATTCAAACTTTTTGTCTAACAATGTTTTA----------AAAAACTCTTTATTTGGAGGGAATTCTCAAATTTCTAAATACTCTACAAACAT-TAGGATCAGGGCTCACATTCCCAGTTTCCCTTGTAGCCAGATGTGCATATGGAACATGGCCTCAGCTAATGAAGCATACCCACATATTTGAAAGTAAGAAAAGTGT---------TAAGAGGAACTGTAGATATCATTTTAGTTGATGTAAGGATGGAAAATAAATAACCAACTTTCACTGGTGAACTTTGTCTTCAATCATTGTTTTCCCGTGGGTAAGTGGCTAATTTTCTGGCCTAGAGGTGAAATTGGTGTGTTGGTAAGAATTGATTTAATGATAACCTGCTTTTGTC-TTTTT-AAAAATTGTGAAT--CCACCATTGTTTCTGGTCCTGTTTTATACTTATGCAGTGTATAATCTCTCATGCAAAATTTAGTTCTTTGTTT---------CTCAGCTTAAACTGGATTTTGATGAGCAG--TTTTCACCTTCAAATGAAAGAAATGGCCTTGGTTGATGTTAGACAAAAGTAAC----AAGAAGGAATTAAAGAAATTTGTTTGTCATCTT-GTAACATTAAATAAATGAA---ACTGAAAATTCAACAATTCTGCTTCATAAAAAAGTAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCATTAAATGAAATTTCTGCCTCATGGAAGGTTTTTAGAACTATGTAATA----ATACCATACAGACCATTA-GGAGAGAAATGAATAAAGACTGAAAGAAGTAAGCACTGTGTGGTAACATAGATGACGCACAGTTGTGTGCGTGGAGCCCTAATACATTTGACCATGGAATTTATACAATAAATGTCAGTTTCCTGTGAACCTGATAATTTATATGACTTTCGCAGACCTTTCCTTAACCTAAACTGTTTAGGTTTCCTGTCGACAGACTGCATGTATTCTCACCTTTAACCTTTCCATAATCTTCCCTAATTACAGATGTCATTGATTCTTAATAGCAAAAGAACAGCAGTAGCTTATAAAGTTATAT---TATTT-GTTTTTTACTAATATGTGAAGTGATTTTGTCT-TTCATTTCACCTCTAGAGCTAATTATGTCTTCTAGGTTAACAAAAATTCCAGATCATACCATCATTAGTTTAAACTTTACAATGAAATC---ATTATTTCCATTTATTACTAGCCTGCATTATAGCAATGTTTAGCTAATGAATTC s mm3.chr16 23004059 1400 - 98986639 TACTCAA---TCTCTGCTCTAATTTCTTGAGCTTGTAAGATGTCCTGTCTCATCTGAAGACTTCTCGTGTCTCCCAGAATGG--AGTGTCATCTGGTGCAAAGTTGCATCCAAACA--CTGAAACCAGTTCCA-TAAGTTTCCTTCAA-----AGATATCTCCATCATGCCTCAGACACTCTGAC-ATTCTGCCTTCTAACAGTTGCT-GGTACTACGTAATGTGGTTTCTACTTTTTAATGAGGTCTTGGTTTTTGCCTTTGAAATCAA--TGAATTTGGACTACTCTGTCAATTTATGATTGAAACCCCATTTATAAAA----TTTAGGGGA-----AAAAAATCTCTATATTTGGAGACTT--CCAAATTCTGAATGTGTCTGAAATATCTAGGACAAAGGAATGCATTCTTAATTTTCCTCATAGCTAAGTATGCATGTGAAATGTAAGCTCTGCTCCTCAGATGTTCCTACAATTGTGGAAG-AATTAAGGTTA---------TCATAG-----ACAGATTCCATTTTAGCTGATGGAAGTGGGAGAGAT---TAACCAAGTTTTGCTGGTAATTTTTGTTCT---------TT--ACACTGAGTAGACAGTTAAGTTCATATTAGAAACG------------------------------ATTGCTATTCTAATTTTATCCTTTTTAAAAAACTGTGAACTACATTCATTTTTACTGGTC----TTCCTACCTATGCAATGTATTCGCTGTCATATATTACTTTGCTCCTCTTTTTAAAAAATATCTGCCTTAAGTTTGATTTTGGTGATCAGAATTCTCACTTTTCTATGAAGAA--------TGTTTG--GACAAAAAAAAATGACGGCAAAGAGAAAGGCATGGCAAAATATCTGCCATCTT-GTAGCAAGCTGTATATTCATGCTTTGAACATTTAAAAATTAT-CTTTTCCAAAAGTTAGGCAA-TTCTATTATTTCTCTGTAATCATAAGGCCACAGAGCTAGATGGTAAT-CTGCCTGTTGAAGGACTTCCAGAAGAATATACAACTTCATAACATAGAGGTCACTACTCAGACAATAGACAAAAGACTGAATGAGTTCTGTGCTGTAT-------------------------------------------------ACCGTGGCATTTATAAAGTAAGTGCTGGAGTCCTGGGAACTTGCTAATTAATATGGCTTTCATAGACATTTCATTAACCTAAATGGCTGAGGTGTCCTGTAGATAGACTGCGTGTGTTCTCATCTTTAACCTTTCTGTAATGTTCCATAATTGCAGATTTCACTGATTTTTAATAGTAGAAGAAGAACAATAGTTTATAAAGTTATTT---------GGTTTTCACTAACAGCTAAAGTGATTTTTTTT---TATTTCACCTCTTGAGCTAACTATGTATTCCAGGTTAACAAAAATCCGGAATCATGTTGCCATTGGCTTGAACTTTGTAGTGATTTTAAACTTCTTGTCATCTATGATTAG-TTATAGTGTGCTACTATGTAGCTAATGGAATC s rn2.chr11 74255326 1396 + 88445885 TACTCAG---TCTCTGCTCTAATCTTTTGAGCTTGTAAGTTGTCCTGTCTCTTCAGAAGACTTCTCGTGTCTCCTGGAATGG--TGTGTCGTCAGGTACAGAGTTGTATCTAGGCAAACTGAAACCAATTCCAAGAAGTTTCCTTCAA-----AGATGTGTCTGTCATGCCTCAGACACTCTGAC-TTTCTGCCTGCTAACTGTTGCT-GGTGTTATTAAATGTGGATTTTACTTTTTA-TGAGCTCCTTGTTTTTGCTTTTGAAATAAA--TGAGTGTGAATTACTATGACAGTTTATGATTGAAACTCTATTTGTAAAA----TTTAGGGGGCGGGGGAAATCTCTTTATGTCTGGAGACTTTTCCAAATTCTGAATCTGTCTGAAGTATCTAGGATAAAGGAATGCATTTTTAATTTTCCTCACAGGCAAATATGCCTATGAAACATCAGCTCAGCTACTCAG-TGAACCTACA-TTTTGAAAG-AATGAAGGTCACCACAGACATCATAG-----GCAGATACCATTTTAGGTCATGAAAGTGGGAGAGAT---AAACCAAGTGTTGCTGGTAATTTCTGTTTT---------TTTTATACTGAGTAGGCAGTTAAGTTTATAGTCTAAATG------------------------------ATTGCTATTCTAGTTTTATC-TTTAAAAAAAACTGTGAACTACATTCATTTTTACTGGTC----TTCCTACCTATACAATGTATGCTCTATCATGCATGATTTTGTTCCTCCTTG-----------------------GATTTTAGTGGTCAGGGTTCTCGCTTTTCTATGAAAAAAA-----ATGTTTG--GACAACAAAA--TGACAGCAAAGCAAAAGGTGAGGCAATATGCCTGCCATCTTTGTAGTAAGCTGCATCTTCATGTTTTGAACATTTAAAAATTAT-CTTTTTCAACAACGAGACGA-TTCTACTATTTTCCAATAATCATAGGGCTACAGGACTAGGTGGCACTTCTGTCTGTTGAAAGATTTCCAGGA---TACACTACCTCATAACACAGAGGTCACTACTCAGACAGTAGACAAAAGACGGAATGATCTGTGTTCTGTAT-------------------------------------------------ACTGTGGCATTAATAAAGTAAGCACTGGAGTCCTGGGAACTTGCTAATTAATATGGCTTTCATAGACATTTCATTACCCTAAATGGCTTTGGTGTCCTGTAGATAGACTGCATGTGTTCTCATCTTTAACCTTTCTGTGATGTTCCATAATTGCATATTTCATTGA-TTTTAATAGCAAAAG------AATAGCTTATAAAGTTATCTTTCAATTTGATTTTTCCCTAACACCTAAAGTAATTTTGTTTGTCTATTTCACCTCTTGAGGTAACTATGTATTCCAGGTTAACAAAAATCCTGAAACATATTGCCATTGGATTTAATTTTATCGTGACCTC---CTTCCTGTCATCTATGATTAG-CTATATTGTGCTACCCTGTAGCTAATGGGATC a score=22404.000000 s hg15.chr4_random 1088087 284 + 1219494 TGTGGCTTGATGACCAACTGGGTCCTGGTGTCCTCCTGGCACCTGATGTCCACCTGGGACTGCATGCTTACCCAGGGCCTGGTGTTCCCCTGGGGCCT-GGTGTGCCCCT-----------------GAGACCTGGGGTCCACCTGGGCCTAGTATCCACTTGGGGCCTCATATCCATCTG---------------------------------GAACATCATGTCCACTTGGGGCCTTTTAGTTACCCAGGGACTGGG---------TGTCCTTCTGGCGCTTGA----GTGTCCTCCTGGGGCCTGGGGTTCTCCTGGGGCCTGGGTGTACATCTCTGGCCTGATG s mm3.chr4 1569425 287 - 152921959 TGAGCCTGAATGTCCAAGTGCAGCCTGAATTTCTCCTGGGACCTGATATTTAATTAAGACTTGGTGTCTAC-CGAGGTCTAGTATCTACTTGTTATATAAGTATTCACCT-----------------GGGCCCGAGTGTCCACTGGGGCTTCATATCCACTTGGGGCCTCCTATATACCTG---------------------------------GAGTCTGATGCTCACCTAGACACT----GTCTATTGAGGCCTGGGCTTGGAGCCCGTTTGTCATATATTGGAATTGGTTTCTACCTGAAGTCTAGGTATTAACTTAGACCCTGAGGCAT------GGTCTGATG s rn2.chr5 3405025 322 - 191625135 TAAGCCTGAATGTCCAAGTGCAGCCTGAATTTCT-------ACCGATGTCCACTTGAGACTTGATGCCTACATGGGGTCGAGTACACGCTTGTTATATAAGCGTTCACCTCAGGCCTCATTCACCTCGGGCCTGAGTGTTCACTGGGGCTTCATATCTCCCTGGGGCCTACTGTACACCTGGGGTCTGCTGTCTCCCTGGCACTGTCTCCCTGTGGGTCTGATGCTCACCTAGACACT----GTCTATCAAGGACTGGGCTTGGAGCCTGCTTGTCAGATATTGGAATTGGTTTCTACCTGAAGTCTAGGTGTGACCTTAGACCCTGAAGCAT--------------- a score=344.000000 s hg15.chr4_random 1088371 11 + 1219494 TCCACCTTGGG s mm3.chr16 93021246 11 + 98986639 TCTCCTCTGAG a score=12847.000000 s hg15.chr4_random 1088987 142 + 1219494 ACTTAGAGACTGGTGTCAACCTGGA--ACCTGATGTCCACTTGGAGTCTGGTGTACACCTTGGGCCTGATGCCCACCTTGGCACAGGTGTACACTTTGGGCCTAGTGTGCACTGAAGCCTGGGTGTCAACCTGGGTCTTGATGC s mm3.chr9 120634747 136 + 124467299 ACATGGATGCTGCTGTGTAACTAGA--TGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCA------CCTGGATGCTACCATGCACCTGGATAC s rn2.chr8 124186107 132 + 127756414 ATTTGGAtgcggccatgcacctggatttgctgccatgcacctgga---tgctatgcacctggatgctgccatgcacctgga---tgccatgcacctggatgctgccatgca------cctggatgtggccatgtacctggatgc a score=3668.000000 s hg15.chr4_random 1089129 25 + 1219494 ACACCTTTAGTCAAGTGTTTAACTG s mm3.chr11 52538056 25 + 122862689 CCACCTGTGTGCAGGTGCCGACCTG s rn2.chr10 34838738 25 + 106208427 ACACCtgtgtgcaggtgcctacctg a score=19009.000000 s hg15.chr4_random 1089590 167 + 1219494 TCCACTTGAGGACTAGGTAGACACCTGGGGCTTTGTGTTCACCAGGGGACTGGTGTTCATCTTGCACCCAGTGTCCACCTGGAC-CCTGTGTATCAACCTGTGGCCTAGGTGGTCACTTGGAGCTTTATGTGCACCTGG-GGCCTGAGAGTTTCCTAGGATCTGATGAC s mm3.chr12 96148696 165 + 114462600 TCCACCTG-GGAGTCAGTATACACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGC--ACCTGATGGTCA-GTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGC s rn2.chr6 121204954 165 + 146362310 TCCACCTG-GGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTGTGC--ACCTGGGAGTCA-GTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGT a score=18452.000000 s hg15.chr4_random 1089757 350 + 1219494 CACTGGGGCCCAGGTAT----CCACCTGG--------GACATCAGGCTCCAAGTGTATATCCAGGCTCCATGTGGACACCAGGCCAGGAGAACGCCAGCCCTTATCTGAATATCAGGTCCTAGATGGATGCCCAGGCCCCATGTGTACATCAGTCCCCGGGTATACACTGGACTCCAGGTGGACACCAGCACTCAATTGGATACACACACTCAAGGTGGACACCAGGCCCCACGTGAATTC------------GTACACT-----CCAGGTGAACATCAGGTCCCAAGTGGATACCTGGACTCCAGGTGTATACCAGTCTCTAAATTAATACCAGGCCTCAGATGGTCCTTAGGAGCCATGTGGGCATTAGTCATCAGG s mm3.chr12 18313515 367 - 114462600 CACTTACACCCAGGTGTTGGACCACATAGATTCTAGCAACACTAGCCCTCAGG----TACCCAG---CCACACTGACCC----CCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACA-CTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGG s rn2.chr6 25157070 264 - 146362310 TGCTTACACCCAGGTGTTGGACCACA--GATTCTCACA-------------------TTCCCAG---CAACACTAACCC----------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACA-CTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGG a score=17366.000000 s hg15.chr4_random 1090514 296 + 1219494 ACATCAGGTCCTAGGTTGACAACCATGCT-----TCAAGTTGACACCTGGCCCCAAGTGAACATCTGGTCCCAGCTGGACACTAGTCTCCTGGTGAATACCTGGGCTCAAGGTTGACATCAGACCCTATGTGAACACTAGACCCCAGCTAAACACTTATGCCCTAAGTGGACATCAGGCCTCAGGTGGTTACCCAGTCCCA-----------------AGGTAAACATAGGA-CCCTGATGGGCACCAGTTATCAAGTG------GATTCCCAGG-----------CCCCAGGTGAATATCAAGTCCTAGGTGGATACCAGGCCCCAAGTGGATAC s mm3.chr12 18313553 336 - 114462600 ACACTAGCCCTCAGGTACCCAGCCACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGTATAC s rn2.chr6 25157106 235 - 146362310 ---------------TTCCCAGCAACACTAACCC------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACAC a score=1378.000000 s hg15.chr4_random 1090810 13 + 1219494 CAGGATCTGGTAG s mm3.chr4 151352400 13 + 152921959 GAAGCCCCAGTGG s rn2.chr5 188219965 13 + 191625135 GAAGCCCCAGTGA a score=21700.000000 s hg15.chr4_random 1090823 333 + 1219494 ACATCAGGTCCCAAGAGGACCCTAGAACCCAGGAGTACATTAGACTCAGCACTCAGATGAACATT-AGGCTTCAGGTGGACATCGTGCCTCAGGTGAACTCCAGGCCCCAGATGAACATCAGGCCCCAGGTGGATGCCCAGGATCCGGGTGCACATCTGGCCACAGTTGGACATTCAACCCCAGGTGACCATCAGGCCATGGGTGAATACACGGTTTCCAGGTAGACATCAGATCAAAGGGGAACATCAGTCCCCCAGTGGACATCAGGCCCAAGGTGGACACTCAACTAGAGGTTTACATCAGGCCACATGTTGACACCTAGTCCCAGGTGGA s mm3.chr12 18313577 327 - 114462600 ACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCACACT------GACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACAC-TGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTCCCAGGTGGA s rn2.chr6 25157115 241 - 146362310 ACACTAACCC------------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACAC-TGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGGA a score=6260.000000 s hg15.chr4_random 1091156 70 + 1219494 CATCAGGCCCCAGCTAGATACCTAGGCTTCCA-GTGAATTTCAGAACCCAGGTTGACATTCAGGCCCCCAG s mm3.chr12 18313832 67 - 114462600 CACTGACTCCCAGGTGCACACT--GACTCCCAGGTGCACACTGACTCCCAGGTGTATACT--GACTCCCAG s rn2.chr6 25157284 67 - 146362310 CCCTGACCCCCAGGTGCACACT--GACCACCAGGTGAACACTGATTTCCAGGTGCACACT--GACTCCCAG a score=21421.000000 s hg15.chr4_random 1091576 269 + 1219494 AACATCCAG-CCCCAGGTGGACATAACCGTTTCCA----TGGATAAACCATTCCCAGGTGGATAGCAGGCCTCAAGAGGATCGCAGTCACCAGGTACACATCAGGCCT---------------------------------CAGATAGACACCAAGTTCCCAGATGTACAGCAGGCCCCAACCAAACCCCAGACTC-----------------ATGTGGAC-------------------ATCAGGGCACAGGTAGACACCAAGCCTTAGGTAAATACCTAACTTCAGGTGGACATCAGACCCCAGGTGGACACCCAGTCCCCAGGTGGACAGTCAGGCCCCA s mm3.chr4 151352275 272 + 152921959 AATACCTAGACTTCAGGTAGA---AACCAATTCCAATATATGACAAACGGGCTCCAAGC-----CCAGGCCTCAATAG----ACAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGG-CCCCAAGTGGATATGAAGCCCCAGTGGACACTCGGGCCC-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACCAAGTCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACATTCAGGCTC-------ACACCCAGGCCCCA s rn2.chr5 188219807 316 + 191625135 CACACCTAGACTTCAGGTAGA---AACCAATTCCAATATCTGACAAGCAGGCTCCAAGC-----CCAGTCCTTGATAG----ACAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGG-CCCCAGGGAGATATGAAGCCCCAGTGAACACTCAGGCCCGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATCAAGTCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACATTCAGGCTT-------ACACTCAAAGCCCA a score=1225.000000 s hg15.chr4_random 1095095 12 + 1219494 tttttgtCATGA s mm3.chr13 29579456 12 + 116242670 ttattattatta s rn2.chr17 53208985 12 - 93540836 ttatttttttta a score=452.000000 s hg15.chr4_random 1095107 31 + 1219494 TCATTCATTTATCTCACAGTTCATTCTCATT s mm3.chr13 29579468 23 + 116242670 ttattgatttattt--------attattata a score=2277.000000 s hg15.chr4_random 1095142 97 + 1219494 GGGCCAGGGTCA---------TGATCATTCATTATCT-CTCAGTTCATCCTCAT--TACGTTGGGCAAACAGTCATGCTGCAGGGTATAGATTATGTTATTCTGTTACT s mm3.chr13 29579758 106 + 116242670 GTTTGAGGGACT-TACAGGGCTGATGTTTCTCTATTTGCACAGTTTACTCTCATCCTAGGTGGAGAAAAGAGCTAT-CAGTCATGAATCTGTAAGATTCTGCAGTTCT- s rn2.chr17 53209087 105 - 93540836 gctcgatg--ctagacAGTGTTGCTGTTTCTCTATTTTCACATTTTACTCACATATTAGGTGGAGAAAGGAGCGAT-CAGCAATGAACTTGCACATTTCTGCTGTCCT- a score=6509.000000 s hg15.chr4_random 1095239 418 + 1219494 TTCAGGTAGAATTGGGGTCTAGGTTATAATTGTTTCTAAGTTTAGATTCTGAATGAGAATCAGCAGAGGT--AGACCACCACT------GCTGGGGCCTGGGGATTGCTGGGAAAAAGGCAGGAAACAAATACAGACCTGACCATGGAGGGTTTGCGTTTCATGGCTCCCATCTGGGTACCCAAGGAACCTACATGTAGGTCGTGTGTGGAGAGCCTACATTGCCCACTCAAAGCAATTGAGGATGGAACAGTCTTG--GGGCTGGAGCTCATTATTTGGAATGATAACCACATCTGCACAGAGAGGACCTGATAAGATGTTGTCCTTCCATGTATATCTGGGAATCCTGTGTAGGGTCTCTCTGTAAGGACAGGGGCAGTGTCGGCTCCTTGGCCTCTAGTTAGCCTCACGAGTAGTCTAGTAAAGG s mm3.chr11 1050807 357 - 122862689 TTCGGACTGAAGTGGGATCCAGTTTCCAGCAGTCTTTA--------TTTAGAATCGGCATCAGTGTAGGTTTCAATCACTGCTCTGGCAGCTGGGGCCCAGGGAGAGCTG---------CAGGAAACAAGAACAGGC--------------TGTATTCTCCAGGGCTCCTGCCTGGGTACAGGTCGGTCCTCCCTGGGAATAGCAGGTGGAGG----ATAACAGCGACTCCAAG-------GGATGGGCTAGTCATGAAGAGATGGAGATCATTG---------------ATGTCCCCACAGGGAGGACCTCAGAGGTCACTGCCCTTCCACCTGTATCCTGGAATCTTTTATGAAACTGCTCCATGAGAACCAGG--------------CAGGAATTTCATTGGCTTCAGGAATAGTCCAGTATAAG a score=1114.000000 s hg15.chr4_random 1095657 193 + 1219494 CTTTGCCAACTTGTCACCATCTGTGGATATTCTGGCCAGCTCTTGTTTTCACCCTACT------GACTTCTTCAGACACTAGGCTTTTGCTTTAGACCATTCATGGTTTTTCTTCCTCTTCAAATCAGTAATCAATAAATCCTCTTCAAATCAATAAATTTCCACTCCTTTAGGAA-ACTCTGATCTTCTGGTCATGCCA s mm3.chr11 51850384 176 + 122862689 TCTCGCAGGCTCAGCAGTAGGTCGAAACAGCTTTCCCAGCTCTTCTTCAGGCCCTGCTGGTAAAGGCGCCTGCAAAGA----------GCCCTGGTCTTCTTGTGGATCTTCCTGCCCG-------GGTGGCCCAT--TTCCTGTTCAACT-----ACTTCCCACTCCAGCAGGAAGACCCTGATCTCAGAGTCAGTCCA a score=5462.000000 s hg15.chr4_random 1095891 249 + 1219494 TTTCTTTTTCCTTCTT-----CCTTGGGGTTTCTAGTAATTTTAGTTTGATGTCTCACTTTCTCCATTTTTTTATTTCTTAATTTTCTTCTGTGATTATTTTCACTGCAGCTGCAGGGCCTAATCCTGGGTTGGCAGAGAACTAGCACTTACTCTGCCGTAATTGGAATCCGAGAGAGATAGGAGGTGCCCTAGTATGAAAATGTGTCTGCTCCTCTCTGCTTCTGGTAGTCTC---TCTGTAGgagtactttacgt s mm3.chr11 1051663 229 - 122862689 cTTCTTGTCTCTTCTTAAGCACCCACATAATTCCAGTAATTTCACTCTGAAGAACCACCATGTCTATTCTG--ACTCCTGGATTTTCTT-----------TTTACTGGAGCCACAAGGTCTCATTTGAAGCTGGCAGAGAATCAGCACTTACACTGCCTGATGTGGAGTC------AGATAG---------CCGTGCTTAAGTGTGGTGACCTCTTTCTGTCTCTGGCAGCTTCAGTcctgaaggaattctatatgt a score=127046.000000 s hg15.chr4_random 1108605 1266 + 1219494 AAAGAAACT----GTGTAATCCCCATTTTTATCACTTTTTTGTGA--CCAAGTGATTTCACTCACCATTTTATTCATCAGTTCCCTATCTACATACTTAGAGCAAATGAGATA---ACATAGAATGCT------TTGCAAAGTAA-AAAGCATGATACAGAATATATAATCTCATCGTAACCAACAAGCTCTGAAGTTTAATCA----CATCCACACAT--CTGGCTTCTTTTCCCCTACCTTCTTATGGTTGTAGATTTCACCATTGTAACAGAGCCACATATATGGATATGTCTTCACTTAAATTGTCTGCATTCCAAACAGCGGGTCCACTACCACCAATGGGTGAAATCCAAAGCAGCAGCTGGTGTATCCATTAACATTCTCAAAACAGGATGCATCTGGACCCCTGTGTGCAATCTTCATAGCACACAGACACTAAACAGAAAGGCAGTCATTGCTGTCAAACAGGACCCAAATGCCACACACAGTGCAATGAAGCTATAAGCTCCCTATGGAGAGAAAAGTAGACAAATCAAAAATATTCAATATCCAATCCAAGTCCGCGTTAAATCTTGATTCCAGAAACGTGCATAAACCACTTCAAAGACTAAAATTTAAACCATCTTT-TCTATAGCGATTTCCCATTTGGTTGGCAGGCATACAGGAGTAAAGAATGATTTAATTTACTTACAAATATTCAGAAAAGATAGTGACCTCTACATTCAACCAGCTACAGCAGCTTAGCACCCAGCCAAAGGCTGCATCTCTCCCACCTTAAG--ATTTAGTGGTTGGCTAGAGTTAGCAGCATCCAGGCCACATCTAT---CTCTGCATTCTAAGTTTGCTTCCAAGATAAAGATACAAGTGCAGGCTGGCTCCAACCTAGCCAGAGATCCCAGCCCCACTCTCT--------GCATCCCAAAATCCCTCAAAGACTCAAGAGACTTTCCAGATTTCTACAGTCTCCTCACAGGTTCCCTTGACAGTTAAATGCCCTCTCTTTACCTCAACTAGCTGCAGGTAGAATATAATGGGCACAAGAGAAA-----------------------ATCACTGTAAGTGTA---ATATGAAGATACACAGCC--------------------CTTTTAAGCATTTCAT-TATATTACATCTAGCTT-ACTTCTAAGGGATTTAT------------TCAGATGTGACTGAAGAAAGTCTAAAGGGAAAAAAAGCAATTTAATTTGATAAATTAAATTATCAATTATAGCCAAATTATTTGGCTATAACAAATTAAACATTTTAAGCTGACAGAAGATGCAAACATTTTAAGTTGACAGAAGATATAAAATGTTCA-CTA s mm3.chr6 7430773 1180 + 149950539 -AAAAAAATTGAATTGGCATCTCCATGTTAATCACTTGAAAAAAAATCTAACTAATTTTAC------CTTTCTGTGTCAGTTTTCTG--TATAAGACCAGAGCAAAGGAGTCA-GAACATAGAAAAAG------ATACAAAGTAAAAAAGCGTGACACAAAATATGAA----CATCATAACC--ATAGGTCTGAAGGTGAGTTATAGCCAGCCAGCCATCCCCAGCTTCACTCTGCTTACCGCCTTGTGGTTGTAGATTTCACCATTGTAACAGAGCCACAAATAAGGGTATTTCCTCACTCTTATCGGCTGCATTCCAAACAGCGGGTCAACCACAGCCAAGCGGTGAAAGCCAAAGCAGCAGTTGGTGTATCCATTGACATTCTCAAAGCGAAATGCATCTGGCCCCCTGTGCGCGATCTTCATCGCACTCAGACACTGCACGGAAAGGCAGTCATCGCTGCCGAAGAGGGCCCAGATGCCACACATGCTACAGGCGGACTGCAGGCACTCTACAGAGAGAAGCACAGG------------GTCTCACATTGAGTATAAG-------CAACTCTGGATTCTTGAAACCTACACAACCCTCTCCAAATGTTGG-ACACAAACCAGCTTTATCTACTGCAATGTCCCATTAGGTGGGTAGGCACAAGGG------GAGTGATTTCATTTGCTTACAAATATTAAGAAATACAAATGACTTTTATATCCAACCA------TAAACCCTGCACCCAGCCAAAGCTCACATTTCTCCCACCTTAGGATTTTTGGTGG-GGGTTACGCCCAGCAACATCCAGGTCAC---------AGCTGCAACCCAGGAT-GCTCCAAAGAGCAATA-GCAGGAGT-AGCTGGCTCCAAGCTAG-GTGGGATACCAGCCCCAGCTACTCCAGGTGAGAACCTCAAAACACCCCAAAGGT-----AGATTCTCCATGTTCGTACAGCCTCTTCTTAAG---CCTCTATAATTAAATGCCATCTCTCTAT---------TTCCAGGTCAAATACAAAGGGAATAAACAGCAACTCGTGGGCACCATTTTGTAATATTAACCCATGTGTATACACAGAGAGACACACACAC--------TAGTATAATACATCCTTAGGCATGTCAC-TCTG------CTAGCTTAACCTCTAAGTGACTTCG------------CTAAATGTTATGGAAGAA----TAAGGAAACAA---------TAATCTGATA-------------------------------------------TCAGATACCCTAA--------------CAAGCATTTTGAGTTTACTGAGGATGTAAAATATTTG-TCA s rn2.chr4 31125688 1188 + 183307734 GAAAAAAATTGAATTGGAATCTCCATTTTAATCACTTTTTAAAAATCTTAACTCATTTTAC------CTTTCCTTGAGAGTGCTCTG--GACAAGACCAGAGCAAAGGAGGCAAGAATGTAGAAAAGGGAATACATTTAAAGTAACAAAG--------------TCAA----CAGTAAGACG--CTGGATCTGAAGTTTAATTA----AAGATAGTGGTCCCCGGCTTCACT-----TACCGCCTTGTGGTTGTAGATTTCACCGTTGTAACACAGCCACAGATAAGGATATTTCCTCACTCTTATTGGCTGCATTCCAAACAGGGGGTCAACCACCGCCAGCCGGTGGAAGCCAAAACAGCAGTTGGTGTATCCATTGACGTTCTCAAAACGGAATGCATCTGGGCCCCTGTGCGCAATCTTCATCGCACTCAGACACTGCACGGAAAGGCAGTCATCGCTGCCGAAGAGGGCCCAGATGCCACACATGCTACAGGAGGGCTGCAGGCAGTCTA-GGAGAGAAGCGCAGG------------GTCTCACACTCAGTATAAG-------TGACTCTTGGTTCCAGAAACTTACACAAGCCTCTCCAAAAGTCGGGACACGAACCATCTTTAATCACAGAAGTGTTCCATTAGGTTGATGGGCACATGGG------AAGTGACTTCGTTTGCTTACAAATATTAAGAAATACAAGTGACCTTTATATTCAACCACACACATAAGCCTTGCGACCAGC------TCACATTTCTCCCACCTGAGG--CTTTGGTGG-GGGTTGCACCCAGCAACACCCAGGTCACCTCTGTAACATCTGCAGCCCAGGATTGCTCCA--GAGCAATA-GCAGGAGT-GGCTGTC-CCAAACTAG-TAGGAATCCCAGCCCCAACCCCTCCAGCTGAGGACCTCAAACCCCCCTAAAGGTCTGGGAGATTCTCCATGTTAGTACAGCCCCTTCTTAAG---CCTCCACAACTAAATACTGTCTCTTTAT---------TTGCAGGTCAAATAGAAAGGGAATAAATAACAGCTGGTAGGCATCATTATGTAATATTAATATATGTacacacacacacacacacacacacacacacTCTAGAATAATGTATCCTTAGGGACGTCACGTCTG------CTAGCTTAAAGTCTAAGTGATTTGGAAGAATAAACATCTAAATGTTATGGGAGAA----TAA-------A---------AAATCTTGTA---------------------------------------------AGATTCCCTAA--------------CAAGCATTGTGAGTTGACTGAGGATGTTACATGTTTACTCA a score=28718.000000 s hg15.chr4_random 1109871 658 + 1219494 TCAA------AATGTCACA--ACTGATAAAAATGTTCTCAAATATTTCTGTCTCAAACTTGCATTGTTCATTAAGGAAGCAAAATAGGTGGGACATACACAGCAACAACATACCTCAAAAAACAACTTGGCTCATTCCTATAAGCCAGGCAGCAAATACATCATCCTTACATATGTTAATTACCTTCCAATTTCAAATTCTCAACTGTGAAATAAAGGGCCATTTTATTTGTCTGCTGCCAGTACAATATGACTGTTTTTATTAAAACATCTCTAACTTGAGAAATATTTGGTGTTTTTCTAAAAAACTGCAAA--------TTGCAGCAAATGGCCAGATAATTTGGAATAAACACCCTACAGAAAAAATATATATTCAAGTTGCATAAGTCACTTTGAGCAATCCTTTGTGGATATTTCATTTATATCTAAATGAACCACAGGTTTAGCTGGCTTTTCTGGAAAACCAGA--------AGCAAATAATGTATGATTATAATGAAAACCATCTCAAGCAATTTGGAAATGAAGTACCACATGTCCTATGCTGTCCCTTCCATAAACTTGACAAAACAGCCTATAACAAATTGTTTACTTTGAG-ATTTAGTAGGAAAATTCCATGAGA--TTTAAATGAGATGACTACTAATAAGCCATCTACATTTGATTCTATTCCAATTAA s mm3.chr6 7432063 511 + 149950539 TCAACATCC-AGTGTCCTT--AATGACAAAAACACTCTCAAATATT--TATCTCAAAGCCGCATTGGTTAGTTA-GAAACAACACTGGAGGGGGGGAAACTTAATTAA-------------------------AGCCCTGTAAGCCAGGAAGCAAGTA----ATTCCTACAAAT--------CCTTC--ATTTAAATATCTGAAGTTCAAA-TAG------------------------------------------TTCAATAAAGAGTCTTTGAACA----------TGCAATCCTGTTCAAAA--AGCAAA-------TCTGCAACAAATGGCCACATCCTCTGAAACCTACACCCT----------------CCCAT----CCCC--CCACGCTGAGCAAGCCTTGGGAAACATTCCGACTGGATCAAA-----------GCTTTGGTGCGCTTTGAGTAAAACCAGACCA-----AGCCACGGA-----------AAGTGGTATCAAGCAATGCAACCGGAAGAGGAAGTG-CAAGAGGCCCATA--GCCCTTCC----ATGCTGTCCAAATGGCCTGTGATAG---GCTCGGTCTGCGCATTCAGAAGGAGAATCC----AGAGATATAGGAGAAGTGGCCATTAATAAG----CAGTGTTTGATTCGATGCCTATGAA s rn2.chr4 31126986 528 + 183307734 TCAGTATCCCAATGTCCTTTTAATGACAAAAACAGTCTCAAATATT--TATCACAAAGCTGCCTTGGTTAATTA-GAAGCAACAATGGGGGAGGAGAAACTTAATCAA-------------------------ACCCCTCTAAGCCAGGGAGCAAGTA----AGTCCTACAAAT--------ATTTC--ATTTGAATAGCCGACGTTCAAAATCG------------------------------------------TTCGATAAAGAATCTCCCACTA-----------GCCATCATGTTCAAAA--TGCCAAGTGCCAATCTGCAACAAATGGCCACAGAATCTGGAACCAGCACCCA--AAAAACTACACAGACTCAA----CATCAACCAATCAGAGCAATCCTCTGAAAATATTCCAACCGCATCAAA-----------GCTTTGATGCACTCTGAATAAAACCAGACCAGCAAAAGCAACAAA-----------AAGTGGTACCGAGCAAAGCAACCTGAAGAGGAAATG-CAAGTGACCTGTA--GCCCCTTCCGTGACGCCGTCCAAACAGTCTATGGCAG---GCTTGGTCTGCACATTCAGTAGGAAAATGC----AGA--TTTAGGAGCA--------------------AATGTTTGGTTCAGTGTCAACGAG a score=75861.000000 s hg15.chr4_random 1110529 995 + 1219494 AAATGGGTTAGGAAAGTGCTTTGAATATCAAGTGTGTTCATCAGGGAATCATTTACCTAAGTCTTCCTAACACTGTTTAGTGAATATTAAGCCTGATGTAGTAAATACACGCTAACCACTAAATTGAAGGGGAAAGAGGGAGAACAAAGAGGCATGTAAAG--TACACTTACTTCTTCTAGTAGGAAAAAGCCAATTAAAACTATCACCTATTAGTTTTATTGGAATCAGTCTTACAGGAGGTCA---------AACTTCCT-ACTGTTGCTACCTATTCTCAATATTTTTCTTATTTCTTCCTAAACTTCTAGAGCTgtgctgtccaataaatatgtgagccacgtatgtaattttaaatgtactagtaagccccattaa------aagaaaagg---tgaaattaattttaaatata-cttaactcagtatgtcccaaatagtaatcatagtaataattttaacatgtaata-aatataaaaaaaatcaagcagatattctacactgttcttcc------------------------------------------------------cactccaacgacaaa--atccagt-------------------gt---------------atttaa------------cac----aacacatctcaattaggactagccaggattacaagtgctcaaca-gttacaggtgactagcacctactgaattggacactgcagTTTCAGTGCATTGAATTTCTATCCCACTTAGCGCTAATTAAAACTTCACCCTCTCACCTGACAATGATGCTAAGATCTCAGTAAGTAACCAACTACAGGCAGTTTCAAGCCCTACTTTACCTCTAATTACTCTTACAGCAATGCAATGAATCATGatttaaaattaaaaaaaaaaaaCTGCTGTTAAATTATTAGTCAAGTGCCCAGGGCAATGGACAGTAAAGAAATAATGTAGGCCATGGGCCGAGATGA--CAAAACGGTCCTTTTATT--TAAAGCTATAATAATCTGAAGCCAGCCCTGTAAAATAGACATCCATTG------------AAAAAG-----------GCATGCTAGTTCTTTTGCTTTTTTGTGTACTTGGCCTCCTGTGTCCCTAAACAGATCTCTTC s mm3.chr6 7433342 952 + 149950539 aaGTGGGCTAACAAAGCGCTCTGAAAATCAATTATGATCACC-GAGAACCATTTACCTAGGTCT---TAAGGCTCTTTAATGAAC----TGTCTGGTATGCAAAACATATGCCAGGCACTACATTGAAGTGTAAAGA--------------------AAAGTTTAAAATTCTTTCCTTCAGCAGGAGTAAGGAAATTCAAACT----CCT----------TTGTAATCGGACTCAGAGGCCCTCT-TGTACCATATTTTCCTCACTGTTG---TCTGT------AAATTTCCTCCTTTCCTGGTTAACTTCTGCAGCAGTACTGGCCA--------GTGAGCCATATGTGAAATTTT-AATATACTAATAAAGCTCATTAAGAAGACAAGAGAAAACATTAAAACTAATTTTAAACATACCTTAACATGACACACCCTAAATA-------------------CGACAACCAATACAATATAATCAAAATTAATT--ATA-TTTACACTACTTTTCCTAAATTATTAAAA-CCGGGCTGGAGGGATACTTTAGTGGTTAGAGGCTG-----CAATCAAACATCAAAACATCAAGC-------------------GTTCGGttttcataatcatcgaaatcgacacattacactcttaccacatctcagttcagactagccagcatttctaggggtcagtCTATGAAAGAGCACAGGCTCCCC----GCTGGACAGCGCCGCTTTCGTACACTGAA---CTGA------TAGTTCT-----AAACTCCACTGGATCACCT-----------TAAGACCTCAATAATCAAC---CCGTGGCCTTGTGCAAGTCTTACTTCA-----AATGAATATTATAGTACTGACATCAATC-------------AACGA--AGAGTTAGCTGTTAAAAC---------------------------------------CCGTAGGCCACAGGCAACGAAAAATCAAACTCGCCCGTGTATTTTAAAAGTTAT-CTTATCTGAAACTAGACCTGTGAAATAGCTATCCATAATTaagaaaaaaaaaaaaaaaaaaaaaaaaGCACGCCAATTCCTTTGCCTTTTCCCGTACTTGGTTGCCTGTCTCCTTAAACAGATTTTTCC s rn2.chr4 31128279 899 + 183307734 aAGTGGGTTAACAAAGCACTTTGAAAGTCAATTATGATCATCAGAGAACCTTTTACCTAGA----------------------------------------AAAGCACGTGCCAGGCACTAAATTAAAGTGAAAAAG--------------------AAAGTTTAAAATTCTTTCCTTCGGCAAGAATAAGGAAATTCAAACT----CCT----------TTGTAGTTGGAATCAGAGGCCCTCCCTGTACCGTATTTTCCTCACTGTTG---TCTGTCCCTTTAATTCTCCTCATTTCCTGGTTAACTTCTGCAGCAGTGCTGGCCA--------GTGAACCATATGTGTAATTTT-AATATACTAATAAAGCCCATTAAGGAGGCAAGAGAAAACATTAAACCTAATTTTAAACATATTTTAACACAACACATCCCAAGCA-------------------TAACAGTCAATACAATATAATCAAAATGAATC--ATAGTTTACACTGTTTTTCCTAAATTATTAAAAACCAGGCTGGAGGGATGGTTTAGTGATTAAAGGCTATCTATCAATCAAACATCAAAACATCAAGTAACAATCAAAACATCAAGTGTTCGGTTTTCATAATCATCAAT------------CACTCTTAATGCGTATCAATTCAGACTACCCAGCATTTCTAGGGGTCAGTACATAAAAGATCACCTGCTCCCCC---GCTGGACAGCGCC-------------------CTAA-----------CT-----AAAATTCACAGGGTCACCT-----------TAAGATCTCAATAATCAAC---CCGTGGTCTTGTGCAAGTCTTACTTCA-----AATTAGTATTACAGTACTGACATCAATC-------------AACGAGAAGAGTTAACTGTTAAAAC---------------------------------------TTGTAAGCCACAGGCCAAGAAAAATCAAACCTGTCCGT-------AAAAGTTAGACTAATCTGAAACTAGGCCTGTGAA-------TCCGTAATTATGGGAGAATAAAAAA-----------GCACGCTAATTCCTTCGACTTTTCCAGTACTTGGCCTCCTGTCTCCTTAAACAGATTTTTCG a score=63959.000000 s hg15.chr4_random 1111785 892 + 1219494 ttttaaaataaG---TGAAGTATTTACATGGATTATGTATACATTC--ATTTTGTAGAACTATA-GATCCCATGTAACTGGGAACTCTTT--------------ACTCTTCTAACACAACATTTATTTAGCCACAAATAAAAGAAGACCAGTGATGTAGCCTGT------ACACAAAAAAGTAAGAAAACACTGGTTAGGCTGGGG-CAGGGGTGGGGGGAAGAGATCTACAAAATTAAAATTTTATTGGGAAGCATCACTAATTAGAATCAGAACAATTACTGCTTTAAAGTAGTTAAGAACAGAGCACAAGGAACCCAGAGAAGAAGCagatatgattcagagcagagctcacagagcagatggtatctgagctgagacTGATAGAATAACATTAATAAGGACATTCACAGCCATTTATTA------TCACTTAACTGCAATGCATTTTGTATAAGTTATTTCTACTCTTCATATCAACCATGGAAAATAATACTTATTCTTTTCTTTTGA--AGTTAAGGAAGTGGTAAGTGGTCTAAGAAGATAAATTAACATACTAAC-----------ACCAAATAGCTCAAGTTCAG-----TGACTCAAGAGTGCCCGCG----TCACTCCAAGAGGTTGCTCAGCAGGCAGACGAGGTAG--AGAGCCCTTCCAAGAAGTGACAGTGAGATGTGAAAGGTCTCAGTGTGTCTCT-----GAGAACAACAGAAACCAGTAAGTAGACCAAGTGGGAAAAGCCATGAAAGAGGCAGGGATTTCCTCTTAAGATAGCAA-GAATAAACAGAGCAGGG--CTGAGGGAAGCCATGGAAAATGGGCAGAATACCATGCATTTAGTGAGAAAAAAA--CAACTTTTACTTTA--GAAAGGGGGAAAGAATGGTGGTGGTCTAGGTAAGCCTAGAAGCAGAGGAAAGGG-----CAGTGGAGGAAAAATATACA s mm3.chr6 7436812 840 + 149950539 TTATAAAACAAAAGCTGAACTATTAATCTAGGTGGTACGGATAATT--GTTTTGTGGAACTCTATAGTTTCCTGTAAGTAGGA-------------ATAAGCAAACTTTTTT-----------TATTTAGTCTGAAATAAAAGAAGCAGGGTGCCTTAGTCTATTAGAGAGGATTGAGGAACAAGAAAACACTGAGAAAATTGGGGATAGGGGTT---------GATGTAAATGGTTACTAATGTACAGGA-ATGGTCAGTAGTCATAACCAGAGTAATTGGAGCTTTAAGG-AGTTAAAGGCAA-------------CAGAAAACAACTGGGCATGGTTCAGAGTAGAGCTCAGAGAGCTGGTGACCTGTGAGCAGAGATTTGT---------------ATGATGCTCCCTGCCTTTTAGTGAGAGCCTCTTCTATCTGCTGTGCATCATTTTGATGTTACATC-------------------------CCACAATTATTCTTCTCTTTTTGTCAGTTATGAGAACAATGGATGATTGAAGCAGATAGATCAACACACCAAATTGCGTAGCTGGCCAGGTGGTCCACTTCTAGGATGCTGA--CAAGAG------------CGATCCCATGAAGCAGCTCACATGGCTAACCAAGTAGAAAGAGGCTTCGAAGAAACTGGCATGCACACCTGAAAGG-------GTGTCCCT-----GCCAACAGCTGGAGCTAGTCCATAGAACAGGTGAGGAAAGCTAACGAAGA------GATGCCCTTCTAATAGAAAAACCAACTGATAGAGCAGAGTTCAGAAGGGAGCTACAGGAAAGGGGTAGCATGCAAGAGG---AAAGAGGAAAAAATGCTACTTTTTCTCTAATGCAAGAGGGGAAAAGTAGT-GTGGTGTAGGTAAATCTGGAAGTAGGATCAAGAGACACACAGAGAGAGAAATCTATATA s rn2.chr4 31133598 827 + 183307734 TTATAAAACAAAAGCTGAAGTATTAACCTAGACGGTATAGATAGGTTAGTTTTGTGGGACACTA--GTTTCGTGTAAGTAGTAGCTCTGTATTCTTACAAGCAAACTTTTTT------------ATTTAGTCTAAAATAAAAGAAGCAGACTGCCTTAGTCTGTTAGAGGGGATTGAGGAAGAAGAAAGTGCTGAGAAAACTGGGG-TAGGGGTT---------GATGTAAAAGGTTACTACTGTACAGGGGATAATCACTA---ATGATCTGAGTAATCGGTGCTTTAAGG-AGTTAAAGGCA--------------------------------------GAGTAG-GCTCAGAGAGCTGGTGACCTGTGAGCAGAGATTTGC---------------ATGGTGCTCCCTGCCTTTTAGTGAGAACCTCCTCTATCTACTGTGTATCATTTTTACGTTACCTC-------------------------AAGCAATTATTCTTCTCTCTTGCTCAGCTACAGACACAGTGGAAGATTATAGAAGAAAGATT--CACACCGAATTGAGTAACTAGCCAAGTGTTTCAGTTCCTGTATGTTGA--CAAGAGAGCCCCCCACCCCACCCCCAAGAAGCAGCTCACAGGGCTGACCAAGTAGAAAGAGGCTTTGAAGAAAGTGGCATGGGAACCTGAAAGG-------GTGTCCCTACAGAGCCGGTCTATGGAGCCAGTGCATAGGCCAGACGGGAAAAGCTAATGAAGAGGAAGTGATGCCCCTTTAACAGAGAAGCCATCTAAAAGAGCAGAG--CAGAGGGGGGCT-----------GTAGCTTACAAGGCG---AATGGGCAAAAGA-GCTACTTTTT-TCTAACACAAGAGGGAAGAAGTGTT-GTGGTGTAAGTGAGTCTGCAGGAAGGAGCAAGAG--ACACAGGGAGAAAAATCTGTGTA a score=6576.000000 s hg15.chr4_random 1124551 129 + 1219494 GTGGGACCTGATGTCTACCTAAGACCGTGTGTTCACCCGGAGCCTGGGTGACCATCTGGGTTATGATGTTCAGCTGGGGCCCAGAGTTCAGCTAGGGACTGGGTCAACCTTCTGCTTGTTGCACAGCTG s mm3.chr4 1569411 110 - 152921959 GTGGGGCCTGG-----GTGTGAGCCTGAATGTCCAAGTGCAGCCTGAATTTCT-CCTGGGACCTGATATTTAATTAAGACTTGGTGTCTAC-------CGAGGTCTAGTATCTACTTGTTATA------ s rn2.chr5 3405011 104 - 191625135 GTGGGCTTTGA-----GTGTAAGCCTGAATGTCCAAGTGCAGCCTGAATTTCT--------ACCGATGTCCACTTGAGACTTGATGCCTAC------ATGGGGTCGAGTACACGCTTGTTATA------ a score=16810.000000 s hg15.chr4_random 1124680 367 + 1219494 GGGACTAGGTACCCACCTGGGCTCCGGTGTTCA-CTGGGGCCTGATGTCTGTCTGGGGCCTTGTATTTACCTAGGA-CCAATGCATCCACCTGA-GGTCTGAGTGCTCTAATGGAGCCTGGAGTTTTCCTGGGGCCTGGGGTCTGCCTTAGGCTTAAGTGTACATCTGTGGCCTCATGTCCACCTTGGGATGGATGTCCACCTGGGGATGGATATTCAGTAGGGGCCTGAGTGTCCACCTGGTTTTTGATGTCTACCTGGGGCCTGGTGTTCATCTGAGGTTTGATATCCACCTGGGGCCGGGACATTTGCCTGGAACCTGATGTACAGCTGGTGCCTGAAGTTCATCTATGCCTGGTGTCCCCCTGGGG s mm3.chr12 96148703 312 + 114462600 GGGAGTCAGTATACACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTG--TGCACCTGATGGTCAGTGTGC---------ACCTGGGAGTC------------------------------AGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGG---GGGTCAGT----GTGCACCTGATGGTCAGTGTGCACCTGGGGGTCA----------GTGTGAACCTGGGG s rn2.chr6 121204961 226 + 146362310 GGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTG--TGCACCTGGGAGTCAGTGTGC---------ACCTGGAAATC------------------------------AGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG------------------------------------------------------GCACCTGAGG---------------------------------------------- a score=21975.000000 s hg15.chr4_random 1125185 246 + 1219494 CCACTGGGGGCTTGATTTTTTACTTGGTTTTTGTGTTAATTTGGGATCTAGTGTCCACCTGGGGCCTAGGTATCCACCTAGGGACTATTGTCCAGCTGGAGACTAATGACTACCTATGGCCTGGTAATCACCTAAGGCTTTGTTTCACTTAGGTACTTGGTGCCAAACTGTTGCCTGCTGTTCAGCTGGGGTATGGTGTCCACCTGGGGTCTGGATGTCAGCCTGGGGCTTGTTGTATACCTGTAT s mm3.chr12 96148697 227 + 114462600 CCACCTGGGAGTCAGTATACACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGT-GTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGT-------GTACCTGGGGGTCAG-----------TGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGG s rn2.chr6 121204955 222 + 146362310 CCACCTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGG-GTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGT-------GCACCTGGGGGTCAG-----------GGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-- a score=24709.000000 s hg15.chr4_random 1125431 296 + 1219494 CTTACATATC---CAGATAGGAGTCTATTTTCTGCTTAGGTGCAGCAGTCCATCTGGTGCTTGAGTGTCAACCTAAGGCCTGATGTCTATGTTGGACCTTGGGTTCACCTGAGGCCTGATATCCACCTGGGGCCTCAATGTCCAAATGGGGCCTGATGCCCATCTGGGCGCTGGGTGTCCACCT-----------------GCAGCATGGATGTCCACTGGTACTTTATGTCCACCAGGGGCCTAATGTCCACCTA---------------------------------AAACCTGGTGTTCACCTGGGGTCTGATGTTCAGCTGAAGACCAGATGTCCACCTGGAGCC s mm3.chr4 1569358 280 - 152921959 CTGACATATTTGTCTGATAAGAGCCTCTGTTCTCCATAGTGAATGTTCCCAGAGTGGGGCCTGGGTGTGAGCCTGA------ATGTCCAAGTGCAGCCTGAATTTCTCCTGGGACCTGATATTTAATTAAGA-CTTGGTGTCTAC-CGAGGTCTAGTATCTACTTGTTATATAAGTATTCACCT-----------------G-GGCCCGAGTGTCCACTGGGGCTTCATATCCACTTGGGGCCTCCTATATACCTG---------------------------------GAGTCTGATGCTCACCTAGACACTG----TCTATTGAGGCCTGG------GCTTGGAGCC s rn2.chr5 3404958 324 - 191625135 CTGACACATCTGTCTGATAAGAACCTCCGCTCTCTACAACGGAGATTCCCAGAGTGGGCTTTGAGTGTAAGCCTGA------ATGTCCAAGTGCAGCCTGAATTTCT-------ACCGATGTCCACTTGAGA-CTTGATGCCTACATGGGGTCGAGTACACGCTTGTTATATAAGCGTTCACCTCAGGCCTCATTCACCTCG-GGCCTGAGTGTTCACTGGGGCTTCATATCTCCCTGGGGCCTACTGTACACCTGGGGTCTGCTGTCTCCCTGGCACTGTCTCCCTGTGGGTCTGATGCTCACCTAGACACTG----TCTATCAAGGACTGG------GCTTGGAGCC a score=23245.000000 s hg15.chr4_random 1126047 475 + 1219494 TGGCCCCTTGGTGTCC---AGT-------TAAGGCATCATGTGAACCTGGCGCCTGAGTGTCC-----------------------ACTTGGGGC---CAAATGA--CTACTGGGGGCCTGAATGTCAACCTAGAATCTGAGGTTTACTAGGGGCCTAGGTATCCACCTGGGGCCCAATGTCCACCTGAGCCTGGGTGTCAACCTGGGGCCTGATGTAAACCTCTAGTTCAGTGTCCACCTTGGGCTTGATGTCAACCTGGAGCCTGATGTCCACCTGAGTACTGATGTTCACCTTTGACCTGATGTCCACCTGTGGACTGTTTATCCACCCATGGCCTGATGTTCACCTGGGGCTGAATGTCCAACTGTGACCTGTTGTGCACCTGGAACCTAGGCATCCACCTGCAGCCTGATGTTCAGCTGGGCTGGGACCCGGAGTTCACCTGAGGCATGATGTCCACCTGAAGCTTGATGTTCACCTGGGGGCTGGGTGTCCACTTGAGGCCTAATAT s mm3.chr12 96148593 454 + 114462600 TGGCCTCATGATGACCCTAAGTTAACTATATGGGCCAAATGAGGGTTGGGTGCTGGATTGTTTTAGGC------------------ATCTGGAGCGAGCAAACAAAGCTGCT----TCCTCAACCTCCACCTGGGAGTCAGTATACACCTGGGAGTCA-GTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGG------GGGGTCAGTGTGCA-CCTGATGGTCAGT----------------GTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGT---------GGCTGGGTA----CCTGAGGGCTAGTGT s rn2.chr6 121204846 358 + 146362310 ------CATGATGACCCTAAGT-------GTGGGCCAGGTGAGTGTTGGGTGCTGGATTGTCTTAGGCCTCAATCATGGGCTGAGCACCTGGAGTGAGCAAGCAAAGCTGCT----TCCCCAACCTCCACCTGGGAGTCAGTGTGCACCTGGAAATCA-GTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------------GCA-CCTGA----------------------------------------------------GGGTTAGTGT---------TGCTGGGAA------------------- a score=1387.000000 s hg15.chr4_random 1126522 80 + 1219494 CCACCTGGACTAGGTACCCACCTGGGATCTGGTGTTCACTCAAGATTGGTGTTCAGC--TGTGGCCTAATGACCACCTGGGT s mm3.chr12 96149023 55 + 114462600 -------GGCTGGGTA----CCTGAGGGCTAGTGT---TGCTAGA---------ATCTATGTGGTCCAA----CACCTGGGT s rn2.chr6 121205195 38 + 146362310 -------TGCTGGGAA----------------------TGTGAGA---------ATC--TGTGGTCCAA----CACCTGGGT a score=6458.000000 s hg15.chr4_random 1126683 46 + 1219494 TACCTGGGGCCTGGTGTCTACCTGGTGCCTAGGTATCCACTTGAGG s mm3.chr4 1569647 46 - 152921959 TATATTGGAATTGGTTTCTACCTGAAGTCTAGGTATTAACTTAGAC s rn2.chr5 3405291 46 - 191625135 GATATTGGAATTGGTTTCTACCTGAAGTCTAGGTGTGACCTTAGAC a score=19929.000000 s hg15.chr4_random 1126729 400 + 1219494 CCTAATGTTCATCTGGAATCTGGTATCCACCTGGGGCCTTGTAATTACCTGGGGTCTGGGCATCCACCTAGGGCTTGAGTATCCTCCTGGGGCCTTGAGTTTTACTGGGGACTCGTGTCTGCCTTGGACCTGGGTGTACATCTGTGGCCTAATGTACACCTTGAGAGTGATGTCAACCTGGGGACAGATGTCCTCTTGGGGTCTGAGTGTACACCTGGTGTCTGATGTCTGCCTGAGGACTTGTGTTCATCTGAGACCTGATATTCACCTGGGGACTGGGCGTCCACGAGGGGCTGATGTCCAGCTGGACACTGGATATCCACCTGGGGCTTAAGGATCCACCCAGAAACTGATGTCAAACTGGGGCCTGATGCCTACCTGCGGACTAG--------GTATCCATGTG s mm3.chr12 96148689 374 + 114462600 CTCAACCTCCACCTGGGAGTCAGTATACACCTGGGAGTCAGTGTGCACCTGGGAG-TCAGTGTGCACCTGGGAGTC-AGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACC-TGGGAGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCAC------CTGATGGTCAG------------TGTGCACCTGGGGGTC-AGTGTGAACCTGGGGGTCAGTGT--GGCTGGG----------TACCTGAGGGCTAGTGTTGCTAGAATCTATGTG s rn2.chr6 121204947 271 + 146362310 CCCAACCTCCACCTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGG-TCAGTGTGCACCTGGGGGTC-AGGGTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACC-TGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCAC------CTGA-------------------------------------------------GGGTTAGTGT--TGCTGGG----------AA---------------TGTGAGAATC--TGTG a score=1099.000000 s hg15.chr4_random 1127129 165 + 1219494 AGGCTTGATGTTCATCCGCAGCCAGACGTCCATCTGATGCTTGATGTCCACCTTAGTCCTGGGTGTCTACTGGAGACCTCATGTTCAACTAGAG-----CTTAGGAACCTACTTGGGGCCTCGTGTAAACCTGGGGACTGGTATGCAGCTGGGTCCCAATGATCCCCTGG s mm3.chrUn_random 2584773 163 - 117911829 gagacccactcccacctggaggcccacttccacctggaggtccactcccaccTGGAGACCCAATCCTACCTGGAGGCC-CACTCCCACCTGGAGGCCCACT------CCCACCTGGAGACCTACTCCCACCTGGAGGCCTATTTCCACCTGGAGTTCCACGCCCTCCTAG a score=20822.000000 s hg15.chr4_random 1127789 290 + 1219494 CTTGGAGTCA------ACCAGTGGCTTTATGTACACCTGGATTCTAGTGTCCTCCTGGGGCCTTATGCTTACCAGGAGTCTGGTGTTCCCCTGGGGTCTAGTATCCACCTGG-AGTCTGGGTGTCCACCTGA-GCCTAATGTTGAGCTTAGACTGAGTGTCAGCCTGAGGCCTGATGTCTACTTAGGGCATAGGTATTCACCTGGGGCTTGTTGTTTACCTGGAGACTAATGTCAACCTTGAGCCTAGGTATCCACCTGGGGAAT-AGTGTCCAGTTGCAGCCAGATGTCCACCTATGG s mm3.chr12 96148701 296 + 114462600 CTGGGAGTCAGTATACACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGAGTC--AGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCA-GTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGG s rn2.chr6 121204959 226 + 146362310 CTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGAAATC--AGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG------------------------------------------------GCACCTGA-------------------- a score=33561.000000 s hg15.chr4_random 1132879 336 + 1219494 TTGTTGTTTTCATCTCATCCTGATTTCCAA-ATACAGGA-----------GAGAAGCTGAATTGGTGTTCACTAA--------CAAG-------CACAGGAGC-TTTGTTATATTTAC----AGTGTCATTCTTGGCAAAACCTGAAGGGTGTGTTCGTGGGGTGATGAGGTTCAG-TCACCTGTGATCTGTGCATCTGGCCAGCACTGTGGTGACATCCTTAGGAATCCATGGGGAGAGAGAAAGCATTCAGGAGTTAGTGGGTCACGTTTGAC-AAGGGCCAATAAAGAAATATGCAAAGACAAAAAACAAGAAGAACAT-TGTCATATTTTCTACCTTTTGTTTATATAAATTTATATCAATGATTTT s mm3.chr13 74225070 338 + 116242670 TTGTTATTTTCATTTTATTTCTAGTACAGATATATAGGAATAACAAGCAGGAAAAGCT--ATAGATTCTCGCAAATACAGTCTCAAGTGTCCCATACAGTAAC--TTTTTCTCCCCACTGGAAATGTCATTCTTGGCAAAACCAGAAGGGCAAATTTGCCCAGTGATGAGGTTTAGATCCCTTGCCAGCTGTGCTGCTCACCAGC--------------------------CAGAGTGAGAGAAAGCTTTCACAAGTTAGTGTGCCTCACTTGGATAAAGGTC---AAAGGATGTTACACGGAGGACCTGAATGGTGGGCATAAATAGCATGTTTTGCATTTGGTTTATACACATGTATTTTAGTTATCTT s rn2.chr2 242306313 340 - 246339213 TTGTTATTTTCACTTTATTTCTAGTACTGATATATAGGGATAACAAGGAGGAAGCGCT--ATTGATTCTCACAAATACAGTCTCAAGTGTCCCACACAGTAACGTCTTTTGTTCCCACTGGAAATGTCATTCTTGGCAAAACCAGAAGGGCAAGTTTGCCCAATGATGAGGTTTAGATCCCTTTCCAGCTGTGCTTCTCTCCAGC--------------------------CAGTGTGAGAGAAAGCTTTCACAAGTTAGTATGATTCACTTGGCTAAAGGTC---AAAGGATGGTATACAGAAGACCTGAATGGTGAGCATAAATGACATGATCTGCACTTCGCCTGTACACATTCGTTGTGCTTATCCT a score=17205.000000 s hg15.chr4_random 1137029 167 + 1219494 ATATTCCTTCCTTTGCATGGCATGCA-GGAATGGT--GAAAGCAAA-GAAAC----AGTCATCTCTTCTCTTCCCCCCACTTCTGGTCCCCCGAAATAGGAATGCCAGGTCAAACAGGTGGAGGAGGGAAATGGGGCACAGGTCAAGGTATGATGAATCTCTTAAAAAGAAATCC s mm3.chr10 71880998 155 - 130738012 ATGGCCCTTACTTTGCATGGTATCTC-GCAATGATTAAAAAGCAAATGGGACTCTTAGTCATCAAT------------AATTCCAGTTCTC------ACAAGTTCCAGGTTACCTGGGTGGGGTTGGGGAA-GAGGCACAAATCAGTGCATTATGAATCACTTCAGAGACATTTT s rn2.chr20 563410 154 - 54947872 ATGGCCCTTACTCTGAATGGTATCTTAGTAATGATTAAAAAGCAAA-GGGACTCTTAGTCATCAAT------------AATTCCAGTTCTC------ACAAGTTCCAGGTTACAAGGGTGGGGC-GGGAGA-GAGGCACAAATCAGTGCATTATGAATCACTTCAGAGACATTTT a score=217072.000000 s hg15.chr4_random 1137513 1488 + 1219494 CTTTCCCCAGAATGCTAGCCTGATAGGA--ACTCCACCCCATCCATTCCAACCTAGTAAGG--------ATAGTTTAGTTTGTCTTTTCTGGTCTCACTTCAT---TACATCTAGTGTTCTTTTTTTGTTTCTGTTATTAAATTTCAGAAGACAAA----CCTTAGCATTTTCTAAAAGAAATTATTTTTTACCTAAATACATTGGACTTTGGTCTTAATTTGAAGGAATAGGATAAGTAGACTTTAAGAGAGCGTTCCTACTCCTTCTCTTCC------------------AGTGGCTGCTCTGGGTCCTTGAAAGAGGGTGTGATGTGAACCATCTGGGTTGTGAAGTGGATTTTGTTGAGCCTATGTTTTTTAAGTCCATTAGTCCTGCCCAAGGCTGTGCGCCCTGGAATCCTTGGCTTCACG---TCTGGACCAC-CTTCAGCCAAGTGGTGATGGTGGAGAGGGTCCCCCCATCTTCCAGGACGTGTGAGAGTTTGTAGGTGGTGAGATGGAGGGGGCAGCTTTTAAATCTTCCAGTACCCACCCCCGCTGCTGGCGGTGCTCTCCCCATCGTCCTTGTCCAGGACTCCCATCAGGGTCTCAATCTCTTCTGTGATGCTCTGACTCACATGCTGGGAGGCCCTTTTCCCAATGTATTCCCTGATGTCAACATCGGCGTCCTATGTCCCCACTAGCAGCTTCACCATCTCCAAG-----GTACATGGCTGCCAAGTGCAGGACGGTGTAGC----------TCTGGCCTTGCTGTTCCCAGGCAGCAGAGGCTCGTTGGGGAAGTTGACCAGCATGGCCAGAAGCTCCAGCCTTCAGTGCTAGGTG--CTGGCACAGGCAGGTGAGGCT-GTGATGAAGCCCAGAGTGGCCAGCAGGCT-GGCTGGCACGGGGGCAACCCC-CTAAGCTGT-CCACTCCCCATCAGAGGCCGAGAGCAGCCAGCCGTGCTCCCT--GGTCCA-GCTCACCCAGCCC----CACAGCTCTCC---TCTGCGGACGGGAAAGCCAGCGCTGCGCCGCCAGAGTCA--CTCGCCTCTGCGGTGTCCT-CGGAGGAGGAGCTCCCAG-GCTGCTGCCTCCAGGACACAGGTTCCTCTTCAAGGGCAGGACACTGTGCCTTCCCAAGTCGCTCAAGTTCTGGCGGAAAGGCCTCGGGGTGGTAGCCCCCC---AGGAGCCGCCCCTGTCCgcctcctggcaaccgtggggcgggggctccaggtccttgctgg-TCTGAGGTCCCGCATCTGGGGTAGGGGCTGGTGGAGCC-----AGCGAGCTCTTCCTGCGTCCCCGCCGCTCAGGGCAGACCCTGCAGGGGCTGGGCTCCCCCTTGCCCAGCTCGGCCC------TGCCTGTGGA---GCAC---ATCGGGGACCGCTGTTTCAGGGAGGGGATGGTGAATGCTGC----------GCTCCGCATTCACGTGGACGCGGGACAGGTCCCAGGG--GCGCGGCCTCAGGCGGAGG------CCCCGC-CAGAACCTCTTCCTGAGATGCAGGTACTGGGCGCCATCGACGGGGTCCGTG----CAGTGGCCACAGCGTTCACC s mm3.chr10 71881153 1537 - 130738012 CTTGCCTCAGAATGCTATCCTGAAAGGATTATTACA---GATCCACCCCAAGCCCGAAAGTTAAAATGCATAATTTATTTGGTTTTTTCTGCTTCCACTTCTTATCCATACCCAGTATTATTCTACCTT------------------GAAGACAAATAAGCCTTAGCA-TTTCTAGCGCGAATTATTTT--ACCCAAATACATTGGACTTCGGTCTCAGTTTAAAGGAA---GATGAGTAGCCTCTAAGAGACCTTtcctcctcctcctcctcctcctcctccccttcctccAGTGTCGGTTTAGCATCCCTGAAGGAGGGAGTGGTGTGAATGATCTGGGTTCGGAATCGGATTTTGTTGAGTCGTGGCTTCATCCGTCCACTTGAGCTGCCCGAGGCTTTGCGACCT-GAATCTTTTGCTTTGCTTCCTCCAGTCCATCCCTCGGGGACGTGGTGGTGAAGTTCAG-----CTCCGTCTTCCACGACCGGGGAGAGTTTGTGAGTGATGTG-TGAGGGGAGCACCTTTGAAAGTCTCCAGCGCCCACCCCCGCGGGCGGCAGGGCTGTCTCCATCATCTTCATCCAGGGCTCCCACCAGGTTCTTTATCTCCTCTGCGATGCTCTCGCTCAGATACTGAGAGGCCTTTCTCCCGCTGTAGTCCCTGATGTCTACATCTGCGTCGTAGGCCCCCACTAGTAACTTCACCACCTCTACATGCCCATGCATCGCTGCCAAATGTAGGGCAGTGTAGCCTCCGCTCGACTTGGCATTGATGTTCACTGGCAGCTGGTGTTTGGTGGCAAAGTTGACCAACATGGCCAGGAGCTCTTGCCTGCCGTGCTTGGCGGCCCAGTGGAGACAAGTGAAGCCGGTGATGAAGTCTCGCTTCGAGAGCAGGCCGGGCTCACAAGTGAGCAGCCCTTCTAGGCTGTCCCACTTGCCCTCGGAAGCTGAGAGCATCCAGGCGT---------GATCCAGGGTAACCGAGGCCCCGACGCTGCTCTCCTCTTCTGCGGACGAAGAAGCTAACGATGCGGTATCGGAGTCGCCCCCTCCTCTGCTGCGACCT---------------CCAGCGTTACCGTCCCCAGGACCCACGCTCCTCTTTAGTTGCGGGGAGCTGCCCAACACCAGGTCCCGAAAGTTCTGACGGGCCGACCTGGGTGTGTTTGGCCCACTAGGGGAACTGCCCCCTTCAGCCTCC------CCCTGTGGAGGGAGTTTAAGGTTCTCGCTGGACCCGGGACCCGACGCCCAGGACACGGCCTCGACCTCCTGTGGTGGCGAGTCCTTACCTTGGGCC--CCACCTTGAGCAGGGGCTGGAGGCTCTTGGTCGCTCACTTCGCCACCCAGTCCGAGAGACAACTGTGGATTTGCCT---CCTGGAGCTGGCTGCCCTCGCAAGGCTCCGCTGCAAGGTCCGGGACTTGAGGCTCCTCAGTCACCTCGATACGCGGGGGCTCTCGGGGGAGCTTGGCCTCAAGCGGGGGGGAATCCCCCGTACAGAACCTTTTCTTGAGATGCACATACTTGGTACCATCCGCGGGATCGGTGCGCACGGTGGCCACGGCATTGACC s rn2.chr20 563564 1558 - 54947872 CTTGCCCCAGAATGCTATCCGGAAAGGATTATTGCA---GATCCACTCCAAGCCCAGAAGTTGAAATGCA--ATTTATCCTGTCTTTTCTGCCTCCACTTCTTATCCATACCCAGTATTACTCTACCTT------------------GAAGACAAATAAGCCTTAGTA-TTTCTAGCACCCATTGTTTTTTACCCGAATACATTGGACTTCGGTCTCAGTTTAAAGGAA---GATGAGTAGCCTCGAAGAGGCCTTtcctcctcttcctcttccccctcctcc---------AGTGTCGGTTCAGCATCCTTGAAGGAGGGAGTGGTGTGAATGATCTGGGTTCGGAATCGGATTTTGTTGAGTCGTGGTTTTATCCGTCCACTCGAGCTGCCCGAGGCTTTGCGACCT-GAATCTTTTGCTTTGCTTCCTCCAGTCCATCCCTCGGCGAGGTGGTGGTGATGGTCAG-----CTCCGTCTTCCACGACCGGGGAGAGTTTGTGAGTGATGTG-TGATGGGAGCACCTTTGAAAGTCTCCAGCGTCCACTCCCGCGGCCGGCAGCGCTGTCTCCATCGTCTTCGTCCAGGGCTCCCACCAGGTTCTTTATCTCCTCTGCAATGCTCTCACTCAGATACTGAGAGGCCTTTCTCCCGCTGTAGTCCCTGATGTCTACATCTGCGTCGTAGGCTCCCACTAGTAACTTCACCACCTCTACATGCCCATGCATCGCTGCCAAATGTAGGGCAGTGTAGCCTCCGCTCGACCTGGCATTGATGTTCACTGGCAGGTGGTGTTTGGTGGCAAAGTTGACCAACATGGCCAGGAGCTCCTGCCTGCCGTGCTTGGCCGCCCAGTGGAGACAAGTGAAGCCGGTGATGAAGTCTCGCTTCGAGAGCAGGCCGGGCTCACAAGTGAGCAGCCCTATTAGGCTGTCCCACTTGCCCTCGGAAGCTGAGAGCATCCAGGCGTGCTCAAGAGGATCCAGGGTAACCGAGCCTCCGCCGCTGCTCTCCTCTTCTGCGGATGAAGACGCTAACGAGGTGCTATCGGAGTCGGCCCCTCCTCTGCTGCGACCTCCTGAGGAGATGCTCCCAGCGCTACCGTCCCCAGGACCCGCGCTCCTCTTTAGTTGCGGGGAGCTGCCCATCACCAGGTCCCGAAAGTTCTGACGGGCCGACCTGGGCGTATTTGGCACACTAGGGGAACTGCCCCCTTCAGCCTCCTCACCGCCATGTGGAGGGAGTTTAAGGTTCTCACTGGATCCGGGGCCCGGCGCCCACGACACGGCCTCGACCTCCC---GTGGCGAGTCTTTACTCTGGGCC--CCACCTTGAGCAGCCGCCGGAGGCTTCTGGTGGCTCAGTCCGCCGCCCACTCCGAGAGACAACTGTGGATCTGCCTCCACCGGAGGCTGGCTGCCCTCGCATGGTTTCGCTGGAAGGTCCGGGACTTGAGGCTCCTCAGTCACCTCGATGCGCGGGAGTTGTTGGGGGAGCGCGGCCTCAAGCGGAGGGGACTCCCCCATACAGAACCTTTTCTTGAGATGCACATACTTGGTACCATCCGCGGGATCGGTGCGCACGGTGGCCACTGCGTTGACC a score=1682.000000 s hg15.chr4_random 1139081 39 + 1219494 AAAATATCTAGTTTAAATAATAATTTGATACGGTCAGGT s mm3.chrX 23287136 27 + 149996094 aaaatatctattt---------atttaata---tatGGT s rn2.chr5 52838194 26 - 191625135 aaaatagttattt---------atttagta---tatgg- a score=3476.000000 s hg15.chr4_random 1139120 57 + 1219494 GGGGATGAGTGCACACGTGTGTGTGCACACGTGTGTGTACACACACACGCAGGCTCT s mm3.chr2 159056231 57 + 181423755 GGTTGTGAGTGCACACATGTGTGTGCACATATGTGTGTGCACACATGTGCATACACT a score=522.000000 s hg15.chr4_random 1139178 11 + 1219494 AATGGGATATT s mm3.chrUn_random 3170127 11 - 117911829 AACAGAACATT a score=11009.000000 s hg15.chr4_random 1140472 118 + 1219494 AGAAAGTTTTAAGGCTATGATTATTAGACCATCATACACACAAAAAGTACTTAAAAAGTCTCAGGAATGCAGTCCCTCATTGGCCTGGTATGACAAA-GATAAAAAGAAGTTGGTCGTG s mm3.chr4 114581293 115 - 152921959 GGGAATATATCAAACTGAGATTATCAGGCCAC--TTCACACATAAATGACTTGAAGAACTCCTAGGATGCAGTCTTTCATTTGTCTGAAATAATAAAGGTTAAAA--AAGCTTATTTTG s rn2.chr5 129836921 114 - 191625135 GGCAGTATATCAAGCTGAGATTAGCAGGCCAC--TTCACAAAAACATGTCTTATAGAACTCCAAGGATGCAGTCTTTTGTACATATGAAATAATAAA-GTTCTAA--AAATTTACTTTG a score=7306.000000 s hg15.chr4_random 1140590 358 + 1219494 AAAATTTCT---------GAATGTGGTTTAGGACAAGGAGCCCCAGTAAGATTCAGAGACAACCTAGAAAATTGAAAGACAATTTTACTACCCAAATCACCCTTCTATAAAAAATAATAGAAGATGTCAAATATGAAAATAAAACTGTCCTCTGGGCCCTCAATTTTCTGTGTTATTG-GGAAGGCAGACAGCTACTCAGCAGTTATATcccataagaatggataacactaaaacaactgacaacatcaagtattggttagaaagtggaactgattctctcaaaca-ttttcattgtagtttaagatggcacaaccacttaggaa---aatgtctccctatttcatacaatgccaaatatatacttatttta s mm3.chr4 114581408 359 - 152921959 CAAATATCTATAAACATAGACTTTGGAATTTGAAAAGATATCCCATTAAAATTTAGAAACAACAGAGATGGTTAAGAAATCATTTTTCTACTAAAATAACTCTTACATAAATAGAAATA-AAAATGTTTACTAGAAAACCAAGA--GTACTGTGGA-CTTTAATGTTCTATGTCCTTGTAAAAGGCAAGGAATTATCCAGTACCTAGACTAACGATGTTTGGTTAGAGCAAAATACATTGTTAGTAACCAATGTTAGCTAGAAAAT----TTGAGTCTCTCAAATACTTTTTACTGT-GTTTAGGTTGGCACAACTATCTAAAAATTGTATCTTTTCCAATTTCATATA----CAGACAACAACCCATTTTA a score=26742.000000 s hg15.chr4_random 1145569 262 + 1219494 -------------GAAACTTTGTCACCCAACTTTCAAACAAAAGCATTTTTGAAGTTAGAAAATAGTAGAAGAT-----------AAGCTTTAACTGCCCACTCAAAAGTTTATCAGTCTTAAATACTAAT-ATTAATC-ATGGGAATGTCTTATTTCCATATATTCTGTAAGCATAAATATTGAATAAAATGAGCCATATGTATTCATTTGAATCATGAGTTTCCTTTGTCTTCAATTTGTTTGAAAATCAAGGAATTAATTTGTTT-GAAAAATGCATTATTATTAT s mm3.chr13 21312358 267 + 116242670 -------------GAAACTTTACCTCTTTCCTTTCAATTTGCAAC-TTTTTGAAATTAGGAAATTGTAAAGAGTAGCTACTTAGAAAAATTATACTGCTATCAGAAACTACTATCAATT---AATTGAAAT-ATTAGTTAATTGAAACTTCTCATTTCTTCAAATTGTATAAATCTAAATAATGAATAAAATTATCCACACTTTCTCAATTGAGTTCTGTTTTTTCTTTAGCTAAAG---ATTTAGAAATCAAAGAAATAGTTATGTT-CAGATATCACTTGTTATTAT s rn2.chr17 93181317 280 + 93540836 CTCAAGTCCAACTGAAACTTTACCTCTTTCCTTTCAATTAACAACATTTCTGAAATTAGGAAATTGTAAAGAGTAGCTAGCATAAAAAATTATACCACTGTCACAAATTACTATCCaat---aatttaaattattaattaattGAAACTTTTCATCTCTAAACATTGtataaatttaaataatgaataaaattatCCATACTTTCTCATTTGAGTCCTGGTTTTTCTTTGGCTAAAG---ATTTAGAA-TCAAAGAAAGAATTATTTTTCTGATATA--TTATTATCAT a score=11939.000000 s hg15.chr4_random 1161770 98 + 1219494 AGAATTCAATATGTTTTTAACGAAATTATGTGGGGGAGAAAGTCTTAAATTACAAATGAAATGCAATCAATAGAACTTCACA---ATCTATGCTAAATTTG s mm3.chr13 64320004 99 + 116242670 AAAATTTA--ACGCCTTTAACAGAAGCATGTGAGCAGGAGATTTTTAAAGTACACATCAAATACAGTCAATAAACCTTCTCAAGTATATGTTTTAAATGTG s rn2.chr17 5168987 99 + 93540836 AAAATGTA--ATTCGTTTAGCAGAAGTATGTTTGTGGCAGATTTTTAAGGTACACATCAAATACAGTCAATAGACATTCTCAGGTATACATTTTAAATGTC a score=29418.000000 s hg15.chr4_random 1167194 287 + 1219494 TGAGCAGTAGTTTTAATGCTACTGCAGTGGTGGGAGCACTGGGCGTTGTCGTCCTCACCTGAGGACAAGCAGCTTTGTTTTGGATCATGTATCTGTTATTGTGATGGAGCCATTT--ATTTTTCAGGGAATGACGCCAAATGATGTTTGTCCCTTTGCTTTACATTTTTATAGCTAGGTCTTTGAAGCTGAACTGGAGGAACTTCTTAGCCAATACTGTCTTCTTAAACCAAAAGTTGACAGTTGCAGAAAACACGTTTTTTAGTGTCACGGCAACCAAGCAACATATT s mm3.chr6 142522306 272 - 149950539 TGAGAAGTAGCTTTAATA-TCCCACTATTCAGGAAGGTCTG---GCTGTTGTCCTCTCCTGAGGACCAGCAGCTTGGGTCTGGGC------TCTGCCGTTGTGATGGATTCCTTTGCATTTGTCAGTAAGGGGTGGCCACTA--GGTTTTCCTTTTGCTGAATATTT-CA-AGGGAGGTCTTTGAGGATTAGCTGGAAGGGCCTCTCAGCCGATTCTG-CATCTCAAACCAAAAGTCAACAGTTGTTGATAACACATTTTT--GCTCCATGGTAACAAGGCAAACTGTT s rn2.chr4 152184193 254 - 183307734 TGAGAAGTAGCATTAATG-TCCCACTGTTCAGGAAGGTCTG---GATGTTGTCCACTCCTGGGGAC-----------------AT------TCTGCCATTGTGATGGACTCATTTGTATTTGTCAGTAAGGAGAGGCGGCTA--GGTTTTCCTTTTGCTGTATATTTTCA-AGGGAG---TTCAAGGATGAGCTAGAAGAGCCTCACAGTTGATGCTG-CATCCTGAATCAAAAGCCAACAGTTGCCCGCAAAACAGTTTT-AGCTTCATGGTAACTAGGCAAACTATT a score=91370.000000 s hg15.chr4_random 1168779 660 + 1219494 AAATATTTATGTATCACATACATAGTAT--------GTATAAAATATGAATTTCCATTCCTCTACAGGTTACTATTCTGGTACATTCCCGTTATATTCTGTTTATCAGACTGCAACTAAAACTTTCATGGGTTCAG-CTTTATGTTGAACAGAATTTGCAGAATTATGAGTTGAAGCAAACCCTAGGTTGATAATGCTATGATTCTCCT----------------------------AAATCACCAAAGTGCATGAAATGATTTTAAAGCTCCAGAAATACTGAAGCAACTTTGTGATAAAAATTATTAGTCGATGCACAAGGAGTCTATAATGTCTTGGTTTTGCTATTGCTTACTAAGGTGCAGCACCAGTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTACGTTGGTTGGTGTGTTTGCATTTGTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACATAAGGAGTCAGACCTTTGTTTAAAGCAGTGACAGAAGATGGATTTTTGGCTGTGCGTTCAGAAGCTAAAGGTAATAGTAAATTTACGTATAGATTTTCATTATTGTCTTGGTCGTGTGTTTTCTTTTAAATTATATCTGAAAATCTCTTAG------CAATCCAGAATTTTA-CAA s mm3.chr6 142523066 654 - 149950539 AAATGTGTATGTGTAAC-TACAGAGTGTAGACTCTGGGCTGCAATATGTACTTGAATTTCTTCATGTGTCACAGCTCTGATGCCTGACCCTTGTATCCTGTTTATCAGAACACAGTCTTTATCGTCATGGGTTTAGCCTTTATGGTGA--AAATTTTTCAGAATTGTGAGTTTAGACAAGGTAGATTTGAATAATGCCATActtttttttttctttctccttcttcttcttttttttAAATCACTAATGCACACGAGCTGATGCTAGAACAC---AGATACTGGGTCAG-----------------------CATCCATAAGGATAC--TAACTTTTTG--TTTGCTCTGCTTCCTTAAGCTACAGCAACGTTTTGAATTTGAATATCAGACCAATGTGGATGGTGAGATTATCCTCCACCTCTATGACAAAGGAGGCATCGAGAAAACCATCTGTATGCTGGACGGGGTGTTTGCATTCATCTTACTGGACACTGCCAATAAGAAAGTATTTCTGGGCAGAGACACCTATGGAGTCAGGCCCTTGTTTAAAGCCATGACAGAAGATGGGTTTCTGGCTGTGTGTTCAGAAGCTAAAGGTAAT------------AATGGAGTTTAACTA--TTTTTGGTT-TGTGTTTCTTCCTGGATCATA-GTGAGAATCCCAGAGAGGTGTCAATCAAAAACTTTA-AAA s rn2.chr4 152184797 627 - 183307734 AAATGTGCATGTATGAC-TGCATAGTGTAGACCATGGTGTACAATAGACACTTGGATTTCTGCACGTGTCACTGCTCTGATGCCTGACCATTGCATCCTGTTTATCAGAACTCAATCTTTATTGTCATGGGTTTAGTCTTTATGGTGA--AAAATTTTCAGAATTTTGAGTTGAAACAAGGTTGATTTTGATAATGCCGTAATTTTTTTTTT-------------------------AAATCAGCAAAGCACATGAACTGATTATAGAACAC---AAATGCTGAATCAG-----------------------GATACATAAGGATTC--TAACATTTTG--TTTGCTCTGCTTCCTTAAGCTACAACAACGTTTCGAATTTGAGTATCAGACCAATGTGGACGGTGAGATAATTCTCCATCTCTATGACAAAGGCGGCATCGAGAAAACCATCTGTATGTTGGATGGGGTGTTTGCATTTATCTTACTGGACACTGCCAATAAGAAAGTATTCCTGGGCAGAGATACCTATGGTGTCAGGCCTTTGTTTAAAGCCTTGACAGAAGATGGATTTCTGGCTGTGTGTTCAGAAGCCAAAGGTAAT------------TATGCAGTTTAACTG--GTTTTGGTT-TGCGTTTCTTCCTGGATC----GTTGATATCCTTTACAGATATCAATCAAAAACTTTACAGA a score=22046.000000 s hg15.chr4_random 1172740 190 + 1219494 TATGTCAGTTGCCAGGACTGCTG---GGCAAGCCTGGGAAAGAGAGTACCTGGGGAAAGCA-----GCCTCCTGCTCCCCCGTGCCTTCTTTGAG---------CCTGATGTTCATTTGATGTGGTACTATATAATCACATCCAGTTTACCCTTTGAAATTCCTTGATTGTTCTTTTCTATTTCCTTGACACTGTCCTTTTACAGAC s mm3.chr6 142524610 191 - 149950539 TACATCAGTTACCTAAAATCCCGTCAGGGAAACCTGGCAAAGGAAATAT------AAAGCAGGATGGACTCCTGCTTCTGCGGGCTATCTTTTGGACTTTTAGACCTGATGATGGCTTGATACGGACCTGGAATCCCACCAGCAGTTTACTCTCTGCAGT----------TTGTTTTCTGCATCCTTAACTCTGTCCTTTTCTAGAC s rn2.chr4 152186449 191 - 183307734 TGCGTCAGTTACCTAAGCTCCTGTCAGGGAAGCCTGGCAAAGGGACTAT------AAAGCAGGAAGGACCCCAGCTTCCATGGTCTATCTTTTGGACTTTTAGACCTAATGATTGCTTCATGTGGAATTGTAATCTCCCCCACAGTTCACTCTCTGCAGT----------TTGTTTTCTGCACCCTTAACTCTGTCCTTCTCTAGAC a score=45850.000000 s hg15.chr4_random 1172931 622 + 1219494 ACATAAT--------CTTATCTGGAATACTACAACAGTTTTCTT-TTCTCAGTGATTTTAGAATAACCTGTCAAAAACTCATCTGACTATAGTAGT-ACCTGCTTACAACCTTTTAAT----TACTCCCCATTCCCTACCAGGCTGTGTAGCTCACTTGAGCTCTGCTAGGTGGTGAGGGAATCTGGGTCCTTTTTCTGGTATTTGAATTCAGTGCTACATAGGTTACTGGCTGGGTTGACAATCTGAAATTGTAAATCATGAGTATT--CTATGTAGATAGACTGTCACGAT--TTACAATAAAACATTGACATGTCAA--AGATCATGGTGATGTGAGGTTGGGTACTGTCTGTGAGAATTAATTGAGGAAATTAAAATTATATGGTTTTATTTACATAGAGTGTATAACAACTAGTTAAGGGATAGATGTCTTCTTATCTGACTTTCAAGTATCTAAGAGTGGATTATTGTGCTTGTTAAAGTTCTGGGAACCATGGCTATTTTCTGAAAATACCTCAGTGATGACAAATGAATGACTACCAGCCTCTTGTAACATTAGGACTCCAGTTCATCCCTTTGCTTCATAGGTGTGTCTTTTCCTTTTGTATATATTTGCTTTAGTGTAGAAAATAGGTTTTC s mm3.chr6 142525326 535 - 149950539 aCA-GAT--------CCCAT-TGGAGTGCTGC-------TTCCT-TAACCAGG--CTTTAAAACCATCT------------------CATCGTGGTGATCTGCCTAAGACCTTTCAGTTGGCTGCATCACATCCTCTATGG-GGTGAACAG--CATTTGAGCTCTGCCAGCTAGTGAGCACACTGCATTCCTT----TGACCTTTGAATTCAATG-TACACA-------GATTGGGTTATAAGACT--CATAGTACATTATAACAAATATCTGTGTAGATAGCCTGTTTATCTATTTATTACACAACATTGGCTTTTGTG-CAGATCACGGTGGTGTCAGGGTAGCTACTGTCTTTAAGAACTGCCT----ACAGTTACATTCTATGGCTTT-CTCATACACATTCTATGACAGCCA-TGAAGGGGTGGGTA---------CTGGCTTCTGAGTACCAG-TAGTGTATCATTTTACGTGGTAAAGACTTGAGAACCATTGGTCTCTC---AAAATACCATG----------------------CCAGTTAACATGAAGTTAACATTCTGATTTCTCTTTTTTC-TCAGATTTATATT---TCCTCTTG------TTTATGTTCTGACAGAAAATAGGCCTTC s rn2.chr4 152186945 565 - 183307734 aCA-GATTAAATGATCCCAT-TGGAGTGCTAC-------ATCCTGTTATCAGT--CTTTACAAACATCT------------------CATCGTGGC-ATCTGCCTAAGACGTTTCAGTTGGCTGCATCTCGTCCTCTACAGAGGAGAGCAG--CATATGAGCTCTGCCAGCTACTGAGAACATTGGATTCCTT----TGGCCTTTCAATTCAATG-TACACA-------GACTGGGCTATGAGACT--CACGGTACATTATAATAAATACCTGTGTAGACAGGCTGTCTAACT--TTACCACACAACATTGGCTTTTGTGTCAGATCATGGTGGTGTCAGGGTAGCTACTGTCTATAAGAACTGCCT----AAAGTTACATTATATG----T-CTCATACACATTATATGACATCTA-TTAAGGGAGGGGTA---------GTGGCTTCTGAGTACCTGCTAGCTGATCAATTTGCTTGGTAAAGGCTTGAGAACCATTGGTCTCTCTT-AAAATGCCACGGTAATGACCG--GAATACTTGGCAAGTTATCACGAAGTTAACATTTTGATTTCTCTTCTTTC-TCACATTTATCTCCTCTCATCTTG------TTTGCTTTACGACAGAAAATAGACATTC a score=23999.000000 s hg15.chr4_random 1173592 224 + 1219494 ATTTTTCTATTGCTTTGGATTACCA-AAATTAATGTAATTTGGCACTATATCCCTGTGCCATTATTGTCTCTCTGGTAAGTAGATGGTAGGGTTTTGGGTGATTAAATTTTTTTCCCTATTTTGCTTATTTAATGGGCATATGTTTGTATTAAAAAGGGGAAAATAAATAGGAATGTAGAAGATGTTAACTAATCGTGAAAGTTATTGGGAAGGGTTACCTAATT s mm3.chr6 142526104 212 - 149950539 ATCTTCCTATTGCATCAAATGACTGCAAATCCATGCTGTTTTGTGTTCTGTCTCCATGTCATTCTTGCTTCTTCAGGAGAGA--TGCTAGGGTATGGGGTAATT--ATTTCCCCTCCCACCTTTTTTGTATAATGGATATGCGTTTGTACTTAAGGGGG-----AAAGTATGGGT-TAGAGTGTACTAGCTCACTGCACAGGCTGCAGAGAAG---CACCTAATT s rn2.chr4 152187758 211 - 183307734 ATTTTCCTATTGCATCAAATGACTGCAAACCTATGCGGTTTGGTATTCTGTCTCCGTGTCATTCTTGCTTCTTCGGGAGAGAGATGGTAGGGTGTGGGGCAATT--ATTTCCTCTCCCACTATTTTTGTATGGTGGACATTTATTGCTCCTTAAAGGGG-----CAGGTATGGAT-TAGAG---ATTGGCTCACTGTGAGGGCTGCAGAGAAG---CACCTCATT a score=34019.000000 s hg15.chr4_random 1174391 517 + 1219494 CCTGATtctgagccttggtttccctacctgtgaaatgggCACCCATGGCAGCTCAGAAGTGTCTGGGAGCATCCCCTGTGGGGGAA--------------GGTGTGGGGGGCTGCTGGGGCACAGTCATGGGGAACCCCAGTCCC-------CCTCTCCATGTGCTTCCCTCAATGCTCCCTGATGCCAGCAGTCCTGCCCCCGAACAGAAAGGGGCATTCCTGTGAGTTCCTTGTGTGGGGGACTGGTCA-CAGAGACTCCCCAAGTGCAGGGCAGGGTGGAGGGAGGCTGAGGGGTGGTTGAATGGACAGGAGAAGAGCTCTCTCCAGTCCCTTGGGTCTGGGTGGC---CTGGGG------AGCATCCATTTGGGCAGGCAGCTGGTGGGGCTGGTGGCTGAGCCACTGTGGCTCGGG---------GACCCCAGGCCAGGACAGAGTAGGGTGGGCAGGGAGAGCAGAGTGCGAG----CATATGGGGCAGGACAG-GTGTCTCCTGGACAGAAAGAGCCCTGGTCACTCATGGCTG-CAGCATAGCCATGGCGACAGG s mm3.chr17 69358010 462 - 93529596 CCTAGGTCTGAGCATTGGTCTCTGGAAC----AAATGGGCTTTCACAGCAACTCAGCAG-GACCAGGTGCAACCCCTATAGCAGAAAAGACAGTGACATCAGTGAGGGATAGTACTGGCCC-CAGTC------ACCTCTAGCCCCCAGAGTCCCTCTCTCTGTGACACCCTCACTGGTCCCTA-----AGAAGATATGCCCTCTGATGG-------------------------------------GGTAACCTGGGACTCTCCCAGTT-----------------------------GGTAAAGTATGTAGGAGAAGAGC-CTTTCCAGGAGTTGAAGGCTAGGGAGCAGTATGGGGTTTTCAAGTCTCTATCTGCTGGGGCG---TGGGGGGCAG--GGCT--GTCTCTCTGGTCAGGG---------GACAGACGTATGTGTCTATGGATGCTGAGCAGAGGGGTCAGCATTCAGGGTGACTCAGTGAACAGGACATCGAGTCT-CAGGCCAGAAATAGCTCTGGCTGAGAGCAGCCACCAGCATCACCGTGACGACAGG s rn2.chr10 93820305 456 - 106208427 CCTAGGTCTGAGCATTGGCCTCTGAAAT----AAATGGGCTTTCACAGCAGCTCAGCAG-GTCCAGGTGCAGCCCCTGGAGCAGGAAAGACAGTGACATCAGTGAAGAAGACGACTGGCTC-CAGCC------TGCTCTAGCGCCCAGAGT-CCTTTCCCTTTGACACCCTCAGTGG-CCCTA-----AGAAGGTATGCCCTCTGGTGG-------------------------------------GATTACCAGGGACTCTCCTCGTG-----------------------------AGTAAAGTGTGTAGGAGAAGGAC-CTTTCTAGGGG-TGAAGGCTAGGGAGCAGTCTGGGGTTTTCAAGTCTACA----------------GGGGAGCTG--GGGT--GTCTCTCTGGCTGGGGGAATGGCCAGACAGATTTATGTATCTCTGCATGCTGAACAGAGGGGTCAGCACTCAGGGTGACTCAGTGGACAGGACAGCGAGTCTCCAGGCCAGAAATAGCTCTGGCTGAGTGCAGCCACCAGCATCACCGTGACGACAGG a score=271418.000000 s hg15.chr4_random 1177145 5069 + 1219494 --------------------CCCATGGTAACAGCATCCAGGGTGAATT-TAAATGGCACCCCAAAGAATAAGAGTGG--GCCTGGGTGTCACTGTAGTGGCTGGTGGCTTGTGACAAGTAGTGTGGCTTCCGTGGTGATGAGAAGTGACAGTTCCCCCTGAATC-TGCACTGGAGA--GAAGGTCCTGGAAGCTTTCAGGCCCACC-----CTCCAGGGTCTGGGT-----------------CTGCATC-----------TCTGAGAGTGGCTGGGTG---------AGCAGAAGAATCCT-GACTG-CCTGGCAGTCGGGTTTGG----------------------------------AGC------TGGGGAGGGC-----------------------TGGGCCTGGTTAGCAATGAGCCTATCACAGT---GAACCAG---------AGCTCAAGATAAAGCGAGAGGCCT------------AGCCCA-----GACACCTCCTTCCCTGGTCCCAGCCCCTGTGCCTTGGCCTGTGCAGTGGAAGCCAGGCTCcctcctccaggaagtcttccctgcactt-cctaCTCACACACAGCCTCTCCCAGATTTCTCCCCATCCAGGCTGAGTAGGATTCCCAAGAAGGCTCCTCCCTGAGCCAACTGCCTGCAGTCAACATTATCACCTCCCCCAGTGAATGGCAGTAGTGTTTTTCATC--------------------TTCAGCAGTGGCCTCTGGAG-GGGTCCTAGCAGGTC-GGGGAG-AGAGGTCTGAGTTAGTCCCACGTGAAAGGCAGCCCATGCCTCTCCTCCCAGCAACCCCTAGCAGCAACTTCCACCTGGCTGACTCCACCCAGCTCACAGAGTTGCCCAGCTGGGTGTCCTTGTGGTTGATTGGGGGGAAGGGG--CTGTTAC----CT-CCCGGTCCCCTTCAGGCTGAGACAAGAGCCCTGTGGGTCTGGATCTTGCAGATGGGACCCCCACCCACATGCTCTCCAGGTGGA-TGCCCACCCTGGGCTGTTCTCAGGCCCCTCTCCCCACACTGGGCCCACACCCCGGAGGGAACTCCATGTACCCCTGCCGATATGCCCATCTGAGCCTCAGGGGTCCTGGGCACTGAGAGCTGGGCTGGGCTGAGCTCAGGTACACACTGTCATTGGGGACGGAGAGGGGATGCTGAAGTGGGTGCTTCTGCGTGGGGCCTGCCTGGAGGATCGCCACAGCAGGTGCACCCAGCAGCCAGACCAGCTTCTAGCAGAATAAGCGCACTGT----------------CA-CAGGGGTATGTGAGCTGAGGCTGGGGGCCTGGAGGTGCAGGGGG----------------------------------------------------AGGAGTTGGGGAGA----TGCAGAGGCCCCAAAGATGTCCCAAGTCCCTAAGACT-CTGGTGAGGGAATGGAGGAGCCAG--CACTGGTGGGGAAGTGGGCAGGGGGAACTGGATGGCCTGGCTCTGAGCTGGACACACGGTCTGCACCCACACTTGAGCTGTGCTGTGAAGGCCCAGTCCCCACCTGGGCATGTCCTGTCCTCTGAGGCACAGGGATTCCTCCCCCTCAGCTCTGACCCCTCATCTCCAACTGTTGGGATGACGAGTCCATAGGCAGAGCCAGCCTCACAGGGGACCCAAAGGCCAG--TTCA--------------GATGGACAGCAACTGGAGGTCCCACCG-----GGCACACACACACACTGTGCAGAAAGCTAACGCACTGTTTATTTGGGGGATTGGGGGGAAGCACCGTGCCG---CTGCTCACTGGTAGCCAGCCAGCTGCAGAATGGTGGGGTAGCAAGTACGATGGGCCATGCACTTCTGGCGGTCGATGAAGAGACTGTTGGTCATGGCAGTGACGTCCTTCTCCAGGCTCATGTGGATGTCCTTGAGGTTGCGCAGGGACTGCTCCGCTTGTAGAAGCTTCTCCCGCAGCGCTGTGATGGACTTGTACAGCTCCTCCACCTCACTCACCAGCTTGGGGGTGTTGGGGGGTGTGAGCTGGGGCTGGGGAGGGCAGAAGTATGCACCTACTGGGGTGGAGGGGACCCAAAACTCCCAATGGGAGCTGGCAGGAGGTCCTGGGAAGACGCCATGAAAGGATCCTACCAGGAAAGC---GGCTCTAGGGCAG-AGCATAAATTAC---------GAGGGTCCTCCCAGGGAGCGCGGGCCTGAGTGGGAATGAGTGACCCGCGTGCAATCTCGACCCTGACAGGACAGGACTGGCCTCAGCCGACCAGGCTCAG---------TTCTTT--CCATTCCTGATATTTGACGGAAGGAGGCACCCAGTTCCTTGAAGGAA----------------CTGAGGGGCAGGGAAGGAAGAAAGGTACTTAGGCTCAGAAGGGGCCACCAGGCATCCGTTAACAAGGGAAACAAAAGGACGGCCCATCTATGCCTGTAGCCCAGGCGTAGGTCATACT----TT--------------------------------------CCACCAGAGGTGGGGACAGCAC-------CCTCAGGGCAGCAGGGAATG------GCCCTCTCTGGCCTCTCTGGCCCCGTGGCCTCCAGGAGCTCA----CCTTGTCTGAAGGAGCTTCCTCCCGGGAAGATGAGGTAGCACAGGGTGGGGTGAGACCACGTGGGCACAGGTCCCTGGCACGGGGAGGCCCCCG--ACCCATGACCTGCCCAGTGTCATGTCTATA---TCTGTGTGTTTAAGGCGTGCTTGCATGTTGTGTGTGGCCGCAGAGTCTCCCTCCCCTCTCAGCACCTGTGGGGGATGTGTGTGTGGAGATTGGAGTGTTTATTGGAGAGGGTCGCAGCGAGGAGGTGGATGGGGGCACCTGGGACTGCCTCAGAGGCCCAGGCAGTACCTGAACTGGGCTGCATCGCGGCACAGCTGCATGTTGGGCCGGTGTGAGAGCAGCTACAGCCGGGTCTGGGCTATGTGCAGAGGTTCCTCCTTGTCCTTGATGGCCTCCTTCAGTGCCACCAAGTTGTGTTCCTGATCTGTGATTTCCCGCAGCATCTGCAGACAGGACAGTGCCCCTTGGGCCTG----TGCCCCCAT-GCCCGGGCATATGGAATGTAGAGACCAGTCTGGTCCTACCCAGCTCCTGGGGCTG-----------T-GTCCAGAGGGT---GGTCCTGACCAGTGGCCCTGGGGA---GGCGTGGGTGAGGGG-----AACAATGTGCACGGGGCCCCCAGCGGGCTCTGGAGAGTCA-GGCAGCCTGTTGTCTCT-TAGCTCTGGTCCAAGAACCCCCATCCTTGGTGGTCACCAGGACCCAAATCCTGCTCAAGGACTGGGGACTCAGAGGTG-GTA----AAGGCCATGCTGAGG-----------------------CCCTAGAGT-CAGAGCCCTGCCTGCCAGGCCAGGACTCTTGGGGACCTCCCAGGCAGTCAATGCTCCCCAGACCAGCTCCTGCCTCCATCC--------------TCCCCACAGCTCCTCCTTTTCAGTCATGGGGGTTGCAACA----CACTGCGATCA------TACCCAG-----------TGTCA--CCTGGTTTT-------------ACATAGGTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAGGTGATGAGAGGGGGCAGAGTGGTG------------GGCAGGCGCCGG------------------------AGCTGTCTTCGGGGTTCAGGGTG-----------------------------------------------------------------------CCCCACCTTGTGCAGGTGGTGCTGCAGCTTGTGCCGCGCGTCCTCCAGTTCCTCACAGCGGCGCCCGAAGGCCAGGTTCACGGCGTCACACTGGAGTCCCAGGTCCTCGGAGGTGTCGCGAAGGATGCAGTCCACCAGCACCCACAGGTTGGCCGAGTCCAGGCGCTCGCGCTGGGCGTGGCACAGATTGTCCTGTGTGAACTTGGTCCGGGTCTCTGGGGTGGAGGCGCTGCGGGGCTGGGGACAGCCAGGAGAGGGTCAGGGAGGCTATGCCAGTGGCTGGGGGCCCTGCCGCGCCCCCATTCCCTGTCTGCACCCCATGCTCCTGGAGGAACTGCATGGACTCCAATGCACCCCGTGCAGACCCACGAAGCCCAGTCCCCCAAGCTCCCTGCCTCCGAGTGCCCCCCGCCCACAACTCCCCTGAGTCCACCCACACCCTACCCACCCCGGGCACTTAGTCCCCTCCTGCCCCCGCGACCCCGTTCCCAGCACCGCTGCCCCCGAGGCCCCCTCTGCAGCACCTCTGTCCCCCGCAGCCCCCCTTCCCTAGTACCCAGCGCCCGCGTCCGGTTCTCGCACCCAGGAGTTTGCCATGCTCAAGTGGGCGGTGGTCGTGCTCCCTCTGCTGGCCTTCGGTGGAAATGCAATCCTGCCGGCGCCTGGGGCTGACCGCATCCCACCCTGTCCTGTCTACGGGCAACCAGGCTGTGCACGCGCTGGGCACTTGAGGA--GGTCTTGCACGCTTTCTCATGCCAGGGGCAGACAGTTGCCCAAGTGCCCTCGGGGGCGAGGGCCTCTGGGCCAGG--CTGGGGGAAGCAGCGCCGCTGGGGCCCCCAGGCAGAGGGAGGCG-----AGACCACAGCCAGGGCAAGCACGGGGGCAGAGCT--GGGGCCCCCCTCTCTTGGAAGGTGGTGGAGTGCCGGATGAGCCTGCACCTCGGTGCTCTGGCTGTGGTGGCGCCCGCAAGTCTCGTCGAGGTTGTAGGCCTCCACCTTGTCCAACCAGTCCATCTCGCAGATCTCCGTGTGCTCTCGGTTCAGTCT------------GGGGCGAGGTGGGG--CAGGGCCTTGGTGTGTGGCCAGGGAGGGCCCCACTGGGGACCCTCCATGCTGCAGGCTAGGCCTTCATGCCCGCTTCAGGAGGG----AGTTCTGGGCCGGCTGTCCTT--GTGCTCAGCAGTGACGAAGAGCTGCCGCCCATGCTGGGAGGCTGCAGATCAGTTGTGGCCCTGGGCTTTGGCCACTCAAACTCAGGCTGGGCCAGAACCTCCCCCACCCAGCCCTGTGCTCCCACTGTGACCTGGGACAGCCCCTGCTGG-CTCTGAGCTTCAGGGTTCTGTCGTTCAA--TGCCTTGCC--CCA----GGACCAGCCGTGGGTGGGGTCAGGAGTCAT----------CCCTTGGGCAGCCCTC------------GACCCACTGGATCTGGCTCACTGCTTGCACGATGGCTCTCTTCAGCAGCTCCTGAATGTTCCGGATGGGCTCAGCTTCCTGAGGGAGGAGACGCCCTGAGCACCAGATCCGGTCCTTGGTGAGGATCCCA---------------GGAGGCCCAGCTGCTGA----AGGCCTTTGTCAACACCTTAGCAACCAGAAATAGTTGAATGCCGGGCCTGAGCTCTGATTGTGCAAGTTCTGCTCTCTCACTG--------GG---TTTATCCTGGGCTTTTGGGCATTCT-------CCTTGGTGCATTGTAAGTGGGTTGTTTTCCTC s mm3.chr17 69360918 4318 - 93529596 --------------------CCTATGGCAGCAGTACCCGGGGCACATTTTTAACGGCACCCCAAAGAGCAGGCACAGCTTTCTGGCTGTCGCTGTGGTGACCAACAAC-AGTAACAAGTGGCATGGTTTCCGTGGTGAC-----------ATGTCCTCTGAATAGTGTAATGAAGG--GAGGACCC--GATGTCTC---ACCCACCCCTGACTGCAGGGGCTGAAGAGAAAGGATAAAGGCTACGGCAACGAAGGCCCGGGACTGGGGTTGTCTGGCAGGTAGGTGCTGGTGGCAGGGTCCTAGGCTGACCTTTCTGTCTGAACTGGGCCACTCTTTCAGGGACCACACATCTTCTCAGGAAGC------TGATAAGAGCCCACTGCATACACATCCTCCCA-AGGGAACCAAGGACAATGTGTCCAGGGAATTGAAGAGCCTGATCCAGGTAAACTCCAGAGTAGATGAGAAACCA-----CCCCATCAGCCCAATATGGTTACATTCTCCCCTGGT-CCAGAACTAGCACCGTGGTGTCTGCTGTGAAATCCAGGCTGCCACCTCCAGGAAGCCCTGTCTGTCCTCAATTGTCCCCACACAG-CTGTCCCACATCCCTC----TCCAGGCTT----TGATTTCCAGGAA-----CACTCTGA------TGTCTGTAA--AACCC----ACCTCTCCAGATG----------------TTGACCTGCAAGGAGCATGGGGACA-CGTGGCAATTTCCCCTGGAGCAGATATCACCAGACA-GGGGAGCAGGGGCCAGAATGGGGTC---------------------------------------------------------------------------------TGGTGTCTATCTATGTGT-----GGGTAGCTTGTGGTGGTGGCGGCATATAACTCCCCT-CCCTTCCCCCAACAGTCCAGGACAAGAAACAAGTCCCCCTACCCCT---------GAGTCACAGTCACAGGGTTT-------AA-CGCCCCTCCTGG-------------------------------------------------CTCCA----------------------------TCCTGGGAGCCCTGGACAGTGAGCA-------GTGCTGAG-----------------TTTGGGGGGGGGGAGTAGTT------GGGTGTGATTGGGGTGGGGTTCTGCCTGGATAAT------------TTCTCTGAGTGG-------GGCTGACTGCAGGA-GAGC-CATTGT----------------CATCAAAGGGAGGTGAGCCAAGCCTCAGGCCTGGGAGATAAAAGGGA------------------------------------------------------------GAGAGAACAATGCACTATGCCCAACAGACACACAAGTCCCTCGAACTGCTGGTGAC--ATAGGAGAAACCAG--GCTTGGTGG-----------------------------GGCTCTAAGTGGG-------------------------GCTGTG--GGGGAGTACCTGGCCTCACCTGGACAGACCATTTCCCCTGAAGTGTGG------------------------------------------AAGATGATAGGCTCTTGGACAAAGCCTGGCT--------------GTGTCAG--TTCTGAAATACCTGTCC-AACCGAAAGCCTCTT-------CACCC-----TGCCCCACGCCACTCTAGGCGGAAAACTAAAGAGCTCTTTATTTGAATGA-AGCAGTGAGGCCAGGTGCCAGCCCCAGTCACTGGTAGCCAGCCAGCTGGAGGACACTGGGGTAGCGGTTGCGGTGGGTCATACACTTCTGGCGGTCGATAAAGAGGCTGTTGGTCTTGACTGCGATGTCCTTCTCCAGACTCATGCGTGAATCCTCCAGGTTCCGCAGTGCCTGCTCCGCATCCTGAAGCTTCTCCTTTAACGCTCTGAGGGACATGTTCAACTCCTCCACCTCGCTCAGCAACCT------------------------------------GCAAGGAAAGGAAC--AGTAAGCTGGGGGAGAGACAAA----------GGAAAGGGCAGT------------GACGCTAC-AGAGGATCCCAACAGGCTTACACAGACTCCACCAAAGTGGCAAATGTTGC--------AAAAATTCCT----------GGGAACTTGCATGGGTTAAAAAGGCCCTCGT----TTCTAGTCC-----AAAGAGGGCCTCCCTCAGCTGCGCTGAAGCAGGGAAAGGGAGTCTTGAAACACTGCCACCTTGTGGCGAAAATAAGCAATGGCATCCTGAAAA-------------------CTGATTTATA------GAACAAAATTA--------CGGTAGAGG----------------AAGAAGGAAGAAGACAGA------CGCTTATGCTTAGA----AGGG------CATACTGGAATT---------------------------------------------------------------------------------------------GCCCTGCCAGGCTTCCCT-GCCCTGTGGCCTCATGAATCTTAGGTTTCCAGACTCTAGG---CTTCTTCCAGGAAGGCAAAGCATCCCAGAGTGT--------------TGCACAGGATCCT------GTGCTGTTTCTGACACTCAAAACCCCTCCAGAGCCCTCCCCACAAGCACTATGT---------CTGCTCATATGTAGGA---------------------------CTGATCCTGCAGGAGGGGCTCATG-GTAGCCTCAAGTACTGAGT-AAGACTAAAGGGCCTCAAGGATGACCCCAGCCTTCCAGGGCTGCTCAAACAG--CAAGCAGTACCTGAACTGGGCATTGTCCCGGCACAACTCCACATTGGGCCGGTGTGACCGCTGGTAAAGGCGAGTCTGGGCCACACGCAGAGGGGCCTCCTTGTCCTTGATGGCCTGCTTCAAGGCTGCAATCTGGTGTTCCTGGTCTGTGATCTCCGTCAGGGTCTGTA---AGGGCAGTA---TGTGAACCTGAGGCTGCCTCAAATTCTGGAGCAAACAG------GGCACCTGCCTATCCTAACCCAGCATGTGGGATGGGCTAAACCAGTT-GCCCTTAGTCTCCCAGCCTTGACAAGACACTCTGAGTCCTCCGCCTGTGTCCAGGG-----GCAGCCCTGTACAAGGCTCTCAGCGGG-TCTCATGAGTCGGGGCAGTCTGTTTGCTCTCTAATGCTGGCTACAAAAGTCAGGTCTTAGAGGCTAGATAGGCCACAA---------------CGGGAATTTAGAAGCA-GGACCCCAAAACCACTCTCTGCTCCCATACTATCTTCTTCCCAA-CCCCATAGCACACAGCTCCTGCTGGTCAGCA---------GTGGAGGTGCCAGAAGATCA---CTCCCCAAAACTGCTTTTACATCAAATCAGAGAATCTACAGAAGTGTATGGATGTCTGCTTCAGGGTGAGCTGGTCACAGAAGGACTCTTGAAGCCAAGTGGTGACTTAA-GCAAAGTGGATAGCAACCCTGGTCCCTGTGGATAAGGGAACCCAAGTCC----------------------------------------------------------------------------------------------------TAGGCAAGGGATGGGCGTGGCTTGAGTGGGG------------TCCGAGCACGAGAAGGAGACATGCACAGATGTGAGTAGGTGTATCCTAAGCATGGGATGGGCTCGCTGGTAGGCGTGTCCT-GATGTGCTCAAACAAGTGGGCGTGTCCAAAGGCGGGCGAGCCCTGCGCTCCCACCTTTCGAAGGTGGTACTGCAGCTTCTGGAGTGAGTCGTCCAGCTCTTGGCAGCGGCTTGAGAAAGCCGAGTTCACTGCATCGCACTGTAGCCGCAGGTCCTCGGCCGTATCCCGCAAGATGCAGTCAATTAACTTCCGCAGGTTAACCGAGGCTAGCCGCTCGCGCTCGGCTCGAAGCAGGTTGTCGTGATTGAACTTGGCCCACGTCTCGGGCGTGGAAGCACT----------------------GAGGGT---GGAAGTT-------------GCGGCCTGGTCAGG-------------------------------------------------------------GTGTAGTCACACAGAGAC---TCCCGCACTGTCAGCGATCCCCAGTGTACCCCG--------------GATTCCTCCCTCACACCG-ATATACCGAG------GTTCTCCCATGCCTCTA----------------------------GAGATC-----------------------------------------------------------------------------CTTTGC------------------------TTGCCCTCTACTGGTCACGAGCAGAAACGCTTTCCAG--GCCACCCACAGGGCACTA------GCCCTGTGTGAATTGTGG-----------------GTGCCAGGCACTTGAGTAAGGGGCTTTCCAGTTAGTCCACCCCAACAGCAGACAG-------AGGTTCCCCAGGAGAG-------CTGGGCCAGGTTCTCGTGGGGGCAGGAGTCCT----TCCTCAGATTTTGGAAGTAGAGC--GGAGAGTGGCAGGGACAAACG-GGTTACAGAGCCTAGAATCCTACCTCTCCTCGAACTTGCTGGAATG-CGGATAGAACTGCACCTGGGTGCTCTCATTGGTGTAGCGGGAGCAGGTATCGTCAATGTTGTAGACTTCCACTTTGTCCGACCAGTTCATCTCACACGACTCCTTATGCTCCCTGTTCAGCCTGGAGGGCATGAGGGGGGGGGGCGGGGTTTAGGG-CTCACTGTGT-GCCAGGGAG-----CCCTGGGAA-----------GCAG----GCCC--CATTTCAGCT-----------CCAGTTTGTGCTCAGACAGCCTTCCATGGCCAGCAGT--------------GCCC--------AGGTTCCAGAGCAAAAGTGGAGATGG---TTGTAT----------TCGCTGAG-CAGAGCCTGCAT------------TCCACTAGCTAAGATTTGGAA----GCCTTCTGACCTCTCAGCCACAGTGTCAGGTCCCT--ACCTGTCCTGCCT-CCACCTCAGACCAGCC----TTGGGGACAGAGTCCAG----------CCCTCGGGT--CCCTCAGGGGCTGCTGTGACCCACCGTATCTGGTCCACGGCTTGTCCTATCGTCCTCTTCAGGAGTTCCTGGATGTTCCTGATCAGCTCGGTTTCCTG-GAAATGAGA-----------------CCGGTCCTCTCTGAGCAACCCTGCTC-----------AGAGACTCGGGGACTCAGCAGGAGCCAAGGTATGGACCTCACCAGC--------ATTGACTTTTTGCCTTAATCTCTGTCC------CCCCTCCACCCCCAGAAAAAGGTTCAGCCTTGTGTGCGACGTT------CACTCCGGG-TAGTGTTAGCATGTTGCAAGTGAG-TGTCTCCTCT s rn2.chr10 93823059 4426 - 106208427 GAACTATTCTGATGTTGGGCCCTATGGTGTCAGTACCCAGGGCACGTTCTAAACTGCACCCCAAAGAGCAAGAGCAGCTTTCTGGCTGTCGCTGTGGTGACCAACAAC-TGTGACAAATGGCATGGTTTCCGTGGTGAC-----------GTGTCCTCTGAATAGTGCAATGGGGGCTGAGGG-----GATGCATC---TCCCACCCCTGGCTGCAGGGGCTGAAGGGAAAGGACAAAGGCTATCGTAGC-AAGGCCCAG-ACGGTGGTTGTCTGGGCGGGAGGTGCTGGTGG-----TCATAGGCTGAACTTTCTGTCTGAACTGGGCCTCTCTCTCAGGGACCGTGCACCTCCTCTGGAAGCCCTCCCTGATAAAACCCCATTGCACACACATCCTCCCAGAGGGAACCAAGGTCAATGTTTTCGGGGAATTAAGGAGCCAGGTCCTGGTGAACTCCAGAGTAGGTGAGAAACTAGTTGGCCCCATCAGCCCAATATGGCTGCATTCTCCCCTGGT-CCGGGACTAGTGCAGTGTTCTCTGCCGTGAAATCCAGGCTACCACACCCAGCGAGCCCTGCCTGTCCTCAACTGCCCCCATGCAG-CTGTCCCATGTCCCTC----TCCAGGCTT----TGATTTCCAGGAA-----CACTCTGA------TGTCTGCAA--AACCT-----CCTCTCCAGATG----------------TTGATCCACCGGGAGCATGCGGACAATGTAGCAATTTCCCCCGGAGCAGGTATCATCGGATGTGGAGAGCAGGGGCCAGAATGGAGTC---------------------------------------------------------------------------------AGGTGTCTGTCTATGTGT-----GGGTAGCTTGTGGTGGTGGCG---TGTAACTCCTCTTCCCTCCCCCCTACACTCCAGGATAAGAAATCAGTACCCCTACTCCT---------GACCCCCAGTCATGGGGTTT-------AAACTGACCTCCGGG-------------------------------------------------CTCCA----------------------------CCCTAGGAGCACTGGGCAGTGAGAG-------GTGCCGAG-----------------ATGGGGG--------------------------------------------CTGGATAAT------------TTCTCTGAGTGG-------AGCTGACTGCAGGA-GGGC-CATTGTGTGGAGCAAATAGACTAATCAAAGGGATATGAGCTGAGCCTCAGGCCTAGgagatgagagagacagagacagagacagagacagagagagagagagagagagagagagagagagagagagagagagagaACAGTGCACTATCCCTAAGAGATACACAAGTCCTTTGAACTGCTGGTGAC-GATAGGAGAAACCAGCAGTTTGGTGG-----------------------------GTCTCTAAGAGGG-------------------------GCTGTG--GGGGAGTATCTGGCCTCACCTAGGCTGACGATGTCCCCTGAAGTATGG------------------------------------------AGGATGGTAGACTCGTGGACAAAGTCTGGCT--------------GTGTAAGAGTTCTGAAATACCTGTCCGAACGGACAGCCACCT---GCCCCACCCCCACCTGCACCACGCCACTCTAGGTGGAAAACTAAAGCGCTCTTTATTTGAACGA-GACAGTGAGGCCGGGTGCCAGCCCCAGTCACTGGTAGCCAGCCAGCTGGAGGACCGAGGGGTAGCGGTTGCGGTGGGTCATACACTTCTGGCGGTCGATGAAAAGGCTGTTGGTCTTGACTGCGATGTCCTTCTCTAGACTCATGCGTGAGTCCTCCAGGTTCCGCAGTGCCTGCTCTGCATCCTGAAGCTTCTCCTTTAGCACTTTGAGGGACATGTTCAGCTCCTCCACCTCGCTCATCAACCT------------------------------------GCAGGGGGAAGGACTTGGTAAGCTAGGGGAGAGACCAA----------GGAAAGGGCAGT------------GACGCTAC-AGAGGACCCTAGCAGGCTTGCACAGACTCCACCAAAGTGGCTAGTGTTGCAACAAAAAAAAAAATCCT----------GGGAACTGGCAGGGATCAAAAAGACCCTCGT----TTCCAACCC-----AAAGGGGGCCTCCCTCAGCTGCTCTGGAGCAGGGAAAGGGAGTCTTGAAACACTGCCACCTTGTGGTGAAAATAAGCAATGGCATCCTGAATAGGAGCTAACCCTTGAAGCTTTGATTTCTA------GAACAAAATTA--------CAGTCGAGG----------------AAGGAGGAAGAAGACAGG------CGCTTATTCTTAGA----AGGGTCTGGATATATTGAAACTGGATAGATCAGAAAAGTAAAAGGCATACTACATCATGCCTGTAGGAGGTACATAGAGCACAGGATTACATCAGAGTTACAGGAGTGGGTGGTAGTCCAGCCTGGCCTCCCT-GCCCTGTGGTCTCTGGAATC-TAGGTTTCTAGGCTTTTGG---CTCCTTCCAGGAAGGCAAATCATTCCAGAGTGT----------------CACAGGACCCT------GTGTTGTTCCTGATACTCAAAACCCCTCCAGAGTCTTTCCCACAAGCCCTGTGT---------CTGCTTGTATGTAGGA---------------------------CTGACCCGGTGGGAGGGGTTCATT-GTGGCCTCAAATGCT-----------------CCTAGGGGATGACTCCAGCCACTCGGGGCTGCTCAAACAG--CAAGCAGTACCTGAACTGGGCATTGTCCCGGCACAACTCCACATTGGGCCGGTGTGACCTCTGGTAAAGTCGAGTTTGGGCCACACGCAGAGGGGCCTCCTTGTCCTTGATGGCCTGCTTCAAGGCTGCAATCTGGTGTTCCTGGTCCGTGATCTCACTCAGGATCTGTA---AGGGCAGTG---TGTGAGCCTGAGGCTGACTCAAG-CCTGGAGCAAACAG------GAAAACTGCCTATCCTAACCCAGCATGTGGGAAGGGCTAAACGGGTTGGTCCCTCATCTCCTAGCTTTGACTAGAGACACCAAGTCCTTGGTCTGTGACCAGGGTGGTTACAACCCTGTAGAATGCTCTCAGGGGG-TCTCATGAGTCAGGGCAGTCTGTTTGCTCTCTAATGCT--------------------------------------------------------GGGAGCTTAGAAGCAGGGGCCCCATAGCCACACTATGC-CCCACAGTATCTTCCTCCCAACCCCCACAGCACACAGCTCCTACAGTCCTGC---------------TGTGCCAGCAGACCA---CTCCCAGAAAC-------------------------------------------------TCTGGGTGAACTGGTCACAAAAGGACCCTTGAAGCCAGGTCGCTACTGAGTATAGAGTGGTTATCAACCCTGGTCCCTGTGATTAAGGGAA--CGAGTCT----------------------------------------------------------------------------------------------------TAGATGAGGGATGGGCATGGCTAGAGTGGGGGATGGTGGGTGTTCCAGGGGCGGGGAGGAGTTGAGCACAGATATGAGTAGGTACCCCCTAAGCATGGGACGGGCTCGCTGGTAGGCGTGTCCTAGGTGTGCCCAAACAGGTGGGCGTGTCCAAAGGCGGGCGAGCCCTGTAGTCCCACCTTTAGCAGGTGGTACTGCAGCTTTTGGCGTGCGTCGTTCAGCTCTTCGCAGCGGTTTGAGAAAGCCAGGTTTACTGCGTCGCACTGCAACCGCAGGTCCTCGGCAGTATCCCTCAGGATGCAGTCAATTAACTTCCGCAGGTTAACCGAGGCTAGCCGTTCGCGCTCGGCTCGAAGCAGGACGTCCTGAGTGAACTTACCCCACGTCTCAGGCGTGGAGGCACT----------------------GAGGGT---GAAGGTT-------------GAGGCCTGGTCA-G-------------------------------------------------------------GTGTAGCCACGCGGAGAC---TCTGACAATGTCGGCGATCCCCAATGTGCTCCG--------------TATCCCG-CCTCCCACAG-ACATCCCGAG------GTTCTCCCAGGCCTCTA----------------------------GTGGT------------------------------------------------------------------------------GGTTGC------------------------GTGCCCTCTGCTGGCCGCGAGCAGAAACGCTTTCCAG--GGCACCCGCAGGTCACCA------GCCTTGGGTGAAATGTGG-----------------GTGCCATGCACTTGATTAAGAGGCTTTCCTGTTAGTCCACCCCACAATCAGAGAG-------AGCTTCTCCGGGAGAG-------CTGGGACAGGTCCTCGTGTG----GCATTTCT----TCCTCAGATTTTGGAAGTAGAGCCAAGAGAGTGGAAGGGGCAAACA-GAGTACAGTGCCTAGAAGCCTACCTCTCCTCGAACTTGCTGGAATG-CGGATAAAACTGCACCTGGGTGCTCTCATTGGTGTAGCGGGCGCAGGTATCGTCAATGTTGTAGACTTCTACTTTGTCTGACCAGTTTATCTCACAGTTCTCCTTATGTTCCCGGTTCAGCCT-----------AGGGAAGAGAGGAGATTCAGGG-----CTATGT-GTCAGGGAG-----AACTGGAAA-----------GCAGGCAAGCCC--CATATCAGCCTCAGGGGGGCGCCAGTTTGCGCTCAGACAGCCTTCCAGGGCCAGCGGG--------------GCCC--------AGGTTCCAGAACAAAAGTGGGAACAG---TTGTATATGC-----CCAGCCGAG-CAATGCCTGCAT------------TCCTCTGGCTAAGATCC-AAA----GCCTTCTGACCTCTCAGTCACAGCGTCAGGTACCCTAACCTGTCTTGCCTCCCACCTCAGACCAGCC----TTGAGGACAGAGTTCAGGTATGTCCACCCCTCAGGT--CCCTCAGGGGCTGCTGTGACCCACCGTATCTGGCCCACAGCTTGTCCCATCGTCCTCTTCAGGAGTTCCTGGATGTTCCTGATGAGTTCAGTTTCCTG-GAGATGAGA-----------------CAGGTCCCCTCTAAGTAATCCTCCCCTCCGCCTGCGGAGGGACTTAGGGACTCACCAGGAGTCCAGGTGTGGGCCTCACCACC--------ATTGAC-TTTTGCCTTAATTT-------------CCCCGCAACCCCAGAAAAAGG---AG---TATGTGCGAGGTT------CATTCTGGGAAAGTTTTAGCATGT-----------CGTTTCCTCT a score=31574.000000 s hg15.chr4_random 1182214 793 + 1219494 CAGGGCCTTCTATGGGCTGCTGGGAAGGTCCCTCAG-CGGCAGTTCCCACGCCCCAGGCCTCAAGAGTCATCACTGCTGCTCACTCAGTGCACCCAGGAACGT--TGGCCTGCC----CCTGGCCTCTGGACAGCCCCCGAGG-ACCCAAACTCTGGGGGC-CCAGATGCCCGCCCAGGCTGCCCCTCAGGGCTCTGTGTTGGGAAAGACCATCCTCACACCAAGAACAGGAGGAATACCCTGTGTTTCTTCTTACTGCCTGGCCAGTTTAATTTTCTGTGTG-TAGGAACAAGCCTTTTTTCCCTGTGATTAGGGTCTTTGCCGGGACCACCAGCTACCTCCTTGTGTGCCAGGGCCCGA-GTCCTGCACCCCTCTGTCCCTGGGTTTGCCTCTTCCTGCACTGTCAGTGTCTCCATCACTTCACAGGCACCCTTGTTGCAGGCAGAGGGTTTGCGGGAGCTGCAGCAGTTCTTGAGGCACTGAGAGGGTGCAGGGGGATAGGCCTGCAGAAggggaagggagggaggagggaaggcatgaagggggggagggaTTCAAGGGTTCTT----GCCTGAATTTGGGGGTATGGCAGGAGACCAGCTGCCTCCACCCCACATCTTTCACAAATGTCTACAGGCCTGTAGTGGTTCTCATGGAGGCCCCAGGCTCTGAGAGCTCAGGGAATTCTCCAGAGCCAGCATCAGTGCCAGGACTGAGTTACTCT-CTCACCCTATGGGGTTGCCCCATAGACAAGCTGGGCTGGATTGGGAAGTTACAGGT----GACAAGGAGAAGGGGACCTG------------------------TGGGT s mm3.chr17 69365236 589 - 93529596 AAAGGGTATCTTTTTGCTGTTGGGTCA---CCTAAGACAGCTGTCC----------AGACTCTGGGATCATCCCCAAAACTCCCACAGTTTCCTGAGGAGCATACCAGCCTTAT----ATCGAGCTCTATACTGCCTCTGAGGAACTCAAGCCCACGGGACATCAGATGCCCTCT--GTCTGC---CCA------------------------CTTCCCACCAAGAATAGGTAGGAAACTCTAAGTTTCCTTTAAC--CCCAAC-------ATTTTCTGGGTGCCAGGA----------TTATCTTGTGCTCAAACCC---ACCTGGGCCATGATCT-------------CCAGTGTCCAGTGTCCTCGGTCCCTCT-------------CCCATCTCTGCAC-------------------CCACTGGCC------------------------------------------------------------GAAGTGGGCAAGGCCT-------------AGGGGTAGGA---------------------------CAGGAGTTCTCTGGGGCCCCAGCCTGGCGGTTTA-------------TTCCCCAGCTC--CATCATTCATCCTTGCCCATGGGCCT---GAGGCTACCACAGGAGGCGCCAGCTCTGA--------GGAATTCCCAGTTGTGTG-----GCACCCAGGCTGAGTGGCCCC-ATAATCACACAAGACT-CCCCAAAG-CAAGCTGCGCTGGGGTTTGAGGGAAA-GGTACCCGATGAAGGGAGGGGGACGTGGCAGGGTTTGTTTTCGGTTCAGTTTGGGT s rn2.chr10 93827597 582 - 106208427 aaaGAGTGTCTTTTGGCTGTTGGATCG---CCTAAGACAGCTGTCT----------AGACTCTGGGGTCATCCTCAACACTCCCACAGTATACTGAGGAGTCT--CGGCCTTAGTTAGATCAGGTCCTAGAGCCTCTCTGAGGAACTCAAGCCCATAAGACGTCAGATGCCCTCT--GTCTGCTGCCCA------------------------CTTCCCACCAAGAATAGGTAGGAAACTCTAAGTTTCCTTTTAC--CCCAAC-------ATTTTCTGGGGGCTAGGAA---------TTCTTTCATGTGCAAGCCC---ACATGGGTCATGATCT-------------CCAGTGTCTGGTGTCCTCGGTCCCCCT-------------TCCCTCTCTGCAC-------------------CCACTGCCA------------------------------------------------------------GCAGTGGGCAAGGCCT-------------GGAGGTAGGG---------------------------CAGGAGTTCCCTGAGACCTCAGCCGGGTGACTTA-------------TTCCCCAGTCC--CATCATTCATCTTTGCCCA-----------------CCACAGGAGGCTCCTGCTCTGA--------GGAATTCTGAGTTGTGAG-----TCACT-AGGCTGAGTGACCCCCATAACCATTCAAGGCT-CCCCAAAG-CAAGCTGTACTGGGGTTAGAGGGAAAAGGTATCTAATGAAGGGAGGAGGAGGTAGTAGGttttggttttggttgagttttggt a score=7353.000000 s hg15.chr4_random 1183007 148 + 1219494 -----------GCAGATCTTCGTGTCCC--CGGCTCTG----TATAGGATGAATGGGAGCAGTGGCTCCCAGCCTATCCCACCCTA---CCTGTCCACACCCGCAGTGCTGGCCCAGACCTGGGTTTCCACCTCG-------------------GGAGCAACTGTCCCAAT-CAGGGAGGGTCTCTGG s mm3.chr17 69365913 180 - 93529596 -gTGTATACTAGGAGAACATTGAAGCTC--AGGCTCTGGGGTTCTGGGGCTCTGGGGAGAGAGAGCAGATGCCATGGGCATCCACAAGCCC--TCCATACATGCAACACTGGCT--GGCCCGGCTTTCTACCCTGAACACCAATAGCACTGCAAGGGGCATGCATGGTGGTACGGGG-GAGCCTTTGG s rn2.chr10 93828296 171 - 106208427 agtgtatactaggag---------gctctggggctgaggggctctggggctctggggctcaaggacagatgccatgg-cctccata---cc--tccatacctgcagcactggct--ggcccggctttctaccctgaagtacactagagaagcaAGGGGCATGCATGCTGGTacagggagagcctttgg a score=129770.000000 s hg15.chr4_random 1183155 1024 + 1219494 GGAGCC---------------------------CAGGGTCAGGATGACTGTGCCAGGACTCAAAGGTATTGGAGG-------AGAGGAGAAACAGCTGCTTGGAAGTCAGGGGCCTTCTGGGGCAA-------AACTGCCTCCTGTCA-CTAAGGGGCCAGATTTCAGGACTCAGGTGTCT--CACGCACAGAGGGCTGGTCTCCCGTGTGCTTGCAGCAGCCACGTGGCTTGTCCACATGAACTGCCGGGGGCTCCTCCTCTCTGTGCCCACAAGTCCTGGCCACCCAAGGCTGCTGGCACCTTCAGCAGCTCCGTCTCCACATAGTCACGCACAAGGTTGGCGTGCTGGTGGCGCTGGCTGCACTGCATGTTGTCAGTGGCGATGGAGAAGGGCACCTCCATGGCATCCAGGGCACGCTCCAGCCGTTGCTTCTGGGCCAGCAGCAGGTCGGTCTCTGCAGCCAGCACCTCCACCTCGTGCTGCAGCTCTGACTTCCAGCTGTGCGTGTCTTGCAGTCGCTCGCCCACCCTGCACGTGGAGTCTTGCTGTGTCGGCTGTGCCAGCGCCTGGGTCTCTGCGGCCAGCTGCTGGCTCTCGCGCCCCTGCAGCTCCCGCTCCGACTGGTTGCAGTCGGCGAAGGCCTGGTGGTAGCGAGCATAGCAGTTCTGGAACCACACCTCC----------------------AGCTGGCGGTGGCCAGGCTGGAGGACGTGTAGACGCCCATGTTGCGGGCCACGTCATACTCTTTGCAGGGCAGCTCGCAGGGTGACACTGTCTGCGGTGCTGGCTC--TGGT-AGGAGCACATCCGTCTGCACCATGGTGTCTGCCGCCCATCAGGGC----CAGG----GGAGTGAGGAGTG------TGTGTGGTCAGCTTGTTGCGGTCAGCCCAGTGCAGTCATCGGTCGGCTCCAAAGGCTCAGTCCCAGAGCAGCACGTGGCTCCCAGTCGCTTGGGTGACACAG--TAAACCAAGAGCTTCCTGTTGCCAAGAAACGGGATCTCTTCTCCAGTGGCTAGGGGAGGGGGCATTCAGGGCGGCAGGCAGAATTGCCCTCTTAAAGGGCCAGGCAGACC s mm3.chr17 69366279 995 - 93529596 AAAGCCCACCACCACCGACAACAAAAATCCCCTCAGAGTCAGACTGAACGTCTTTGAAATCTTATGGGCTGGAAGGAATCCCACAAGAGAGAAAGTTACTTGGATGTGGTA-----------GAAA--------------TTCCGCTATCTGAAGGA-------TCAGGA-------GTCCTGCATAGGCA--------CAGTGCTGTGTGAACCCTAAGGCCCTGTG--TTATCTCTATGAG-AGCCAGAGCCTGCCTCCCACGCTGAGCCCGAGCC-------------ACTGGTTGCACCTTCAGTAGCTCCACCTCCACATAGTCCCGGACAAGGTCTGGGTGCTGGCGGCGTTCTCTGCACTGCAGGTTGTCAGTAGCAATGGAGTAAGGCACGGAGGTGGCATCCAAGGCGCGCTGTAGCCGCAGCTTCTGGGCCATCATCAGGTCCGTCTCGGAAGACAGCTCGTCTATCTCTCGCTGCAGCTCTGACTTCCAGCAATGCATGTCCTCCAGGCGCTCTCCCACCTTTCTTGTGGAGTCAAGTTGTGTGCGCTGGGCCAGTGCCCCAGTCTCGGCTACCAGCTGCCCGCTCTCATGCC------GCTGCCGCTCAGAGTAGTCCCGGTCTGCGAAGGCCTGGTGGTAGCGGGCATAAGAGTTCTGAAACCACTCGTCCCTCAGGTATTTGGCTGTGCGGAAGCCAGCGGTGGCCAGACCCGAGGACGTGTAGGCGCCAGTATTGCAGGCCACTTCATATTCTTTGCGCGGAAGCTCACAGACATCTATTGACTGTGGGGCCGGCTCCTTGGTCAGGAGCACGCCCGTTTGGGCCATGGTACCCACTGCCTGGCTAAGCAGGAAGGGAGGCGGAATGAAGAGAGGGTCACTGGGCAATTGTCCAGGCACGATCAA--TGGAGCAGT-ACTGGTC----------ACTCTGTCCCA-AGCAA-----GGTTCCTGGTTGCCTAAGGAACATTGTATACACCAACTGCCTCCTGTTGCTGAGCAACAGGGTCACT----------CAAGGGGGAGG----------------AGCAGAACTGCCCTCTTAAAGGGCCAAGCAGTGT s rn2.chr10 93828658 1020 - 106208427 TAAAGCCACCACCACCATAACAAAAAACCCCCTCAGGGTCAGACTTAACATCTTTGAAATCGTGTGGACTGGAAGGAATCCCAAAAGAGAGAAAATTATTTGGATGTGGGA---------AGGAAAAAAAAAAAACAACCCACCACTGTCTGAAGGA-------TCAGGA-TCAGGGGTCCTGCATGGGCAGAAGGGCATAGTGCTGTGTGAACCCTGGGGTCCTGTG--TTATC-CACTGAG-TGCCCAAGTCTGCCTCCCACTCTGCGCCTGAGCC-------------ACTGGCCGCACCTTCAGCAGCTCCACCTCCACATAGTCCCGGACAAGGTCTGGGTGCTGGCGGCGTTCTCGGCACTGTAGGTTGTCAGTAGCGATGGAGAAGGGCACGGACAAAGCATCCAAGGCGCGTTGTAGCCGAAGCTTCTGGGCCATCATCTGATCAGTCTCGGAAGACAGCTCGTCTATCTCTCGCTGCAGCTCCGACTTCCAGCAATGCATGTCCTCCAGACGCTCTCCCACCCTTCGTGTGGAGTCAAGTTGTGTGCGATAGGCAAGTTCCCCAGTCTCGGCTGCCAGCTGCTTGCTTTCATGCC------GCTGCCTCTCAGAGTAGTCCCGGTCTGCAAAGGCCTGGTGGTAGCGTGCATAAGAGTTCTGAAACCACTCGTCCATGAGGTATTTGGCTGTGCGGAAGCCAGCGGTGGCCAGACCGGCGGATGTATAGGCACCGGTATTACAAGCCACTTCATATTTTTTTTGGGGTAGCTCACAGACATCAATTGACTGCGGGGCTGGCTCCTTGGTCAGGAGCACTTCGGCTTGTGCCATGGTGCTTACTCCCTGGCTGGGC----AGGGAGGCGGAATGAAGAGAGGGTCACTGGGCAATCGTCCAGGCACGATCAG--TGGAGCAGT-ACTGGTC----------ACTCTGTCCCA-AGCAA-----GGCTCCTGGTTGCCTCAGGAACATTGTATACACCAACTGCCTCCTGTTGCTGAGCAACGGGGTCACT----------CGAGGGGGTGG----------------GGCGGAATTGCCCTCTTAAAGGGCCAAGCAGTgg a score=5194.000000 s hg15.chr4_random 1186438 199 + 1219494 tttagtttcttaagaaactactatactcctttttggcatagctgtacgattttacattcccaccagtcatgtgtgaaagctccagtttttactcatgctccccagcgtttgatgt---tttattttt--attttagctattctgatatatatgtgttag----tcattgtggtcttaatttgcaaatttctaatgactaatgatattt s mm3.chr4 114439088 207 - 152921959 ttcaattttctgaggaagtatcagactgatttccagagtggttgtaccattttgcaatcccaccaaaaatggaggagtgttcctttttctccacatcctcgccaacatctgctgtcacttgagtttttgattttggccatt-tgcctggtgtgaggtggaatctcagggttgttttgatttgcgtttccctgatgactaaggatgttg a score=2649.000000 s hg15.chr4_random 1186637 68 + 1219494 -----aacatcttttcctgt-tca----taattaaataccatctgtattc------------cttttcaCATATCATTAGCACAA----------ACGTG s mm3.chr4 114439295 100 - 152921959 aaGGAAGGACTCTTCTTTCTCTCAGATGGAatcttatataaactttatgcagtcagtcaaagcttttatgagttcatgtgtgcaataaaccttccatgtG s rn2.chr5 129693075 98 - 191625135 AAGGGAAGATTTTTCTCTTT-TCAGATGtaatcttatatacaccttatacaaacatccaaagcttctttgagttcatgtgtgtaatagccatgccatgc- a score=120553.000000 s hg15.chr4_random 1186705 1489 + 1219494 AAATATCAGAA---CAAAAT-------------TTTTCACAC---AACTTCAAAATTTT-------------------------TGAGCAATACTCAAGGGAAAAGGTGTTTATTTAGAACAATGAAAACAATGAGACATTTAACTTCCAGC------------------TTAAATAAAGTTGATTGTGTGCA--------------------TAAAAATGGTGAAAATATTGGACTTTCTTGGCAAAAGAAGAAAGG-GGAAGACTTTATATTTTCTG------ACATAATATTCATCATTTGTCTTTGGTT----TGTGTA---TTATGTGTATGATTTTG--AAAAAATGCATCAAAGATATAAC----TTTCTGGTGTTTGCTTTGATATTATCCTTGCAAACAGAAAAG-----TTGGCACATGTTTCTGTATAAAACTGGTCAAAGTTGGCCTAGGAATGATCTTACATTGTACTTTCACTTTACATCATACTGTAAGAGTTTAATAATAGCTAAGGCATCAGCATTGATGTGGACTTACTATACCTATTCAAGAGGTGGTGTGAGGTTTAGG-AGAGTTATGT------GCCCTTTATCATAAAACAAATCTATGAAGCATTTATATAAAAACCCAGTATTTCTGGTTTCAAATTCAGTA-CTGTGCCGTCTGCTTGATAGATTTG---------TTCGCAGGTTAGAGACATT-----------TTATTGCATAACTTCCATGAAATATCACAGTTGTACTCTTGACTATGTTTGAATCACAAAAGAC-TTTAATCTGCACTCA-GTTCTTGTAACTAAAATCTTCAGTTTGAATATGAATTTCACTTAAAGAACATCCCTAGAAATTTCAGAGAG-AA---AAAGACTTTACTTGCAGAATACAATCTGCATTTGCTTTGACAACTAGTTAGTTCACATATGTAAAATAAGTCTACCTGTCTGTATGCATAATTAAGATGTAACAGTAGTGTGGTAA-TGACTTG----TTAAAGCAATTAGAATGGCAGTGGATCATGGCACAATTTACCTTAAAAGCCATGAGCAGAATACATCACAAGCTATGAT---ACAATGAAT--AGTCATT--AGGTTTAAAGTAGTATCCACATATAAAAACACAAAGCATA--TTTTAGCTCTTTAAATGAAAGCTTCATTCAGTCAATATTGGTC-TTCCT-------GTAGATGCATTTATGAAACAAAACCACAAAACATACAGCTTACCCGCTTCTCAAAACTCATTGCACAATAGGTTGAGGGACTTCTCTACACCAGGACCTATTATTAAAAC--------CAGTAAGTCCTCAGTGAAAATCATTTATTTGCCCGGAGTGTCATCTGATGTGTCTGTTGTAGGCAGCTGTGGCAGTGGTGGGTGGTT--TAGTGACACGGACCCTGCCCACATCTGTCCATCCATCAGTGGGCTAGT----GTCTCTCTGGCTGCACCTGAGAAGGGTCTATAGGAGTTAACAGCATTAGCATGGGATT---CAAAAGAAATCATCTTGGATTCAAACTTCCATTTCAGTATTCATTTCCAGCTAAGTTTGTGTAGCATGCTTAATGTTTCTGAAGCTCAATTTTAGTAATGGTAAAG-TATATCTGCTTAAAAGACAGGGACA s mm3.chr4 114439744 1543 - 152921959 aTGtgtcaagaggccagcatgttgtagcattcgtctccataccctggcttgtacattctccctgtctcctcttgcaatgttccctgggtcttctccaagggacaggg--------gaggagagtgaca-----taggcactccagctccagctaat-------ggttgcttttaataattttaataattagcaccatgcgtctctgtattccctactattctctcaaataagaaacttctctgtctaaggttgagTGGAAGAAAAATTTGTCTGTGCTTGGAGCTAAGGGACCCTCATC---TATGTTTTGTTGCATTGTTTATTCTTATCTACAGAGTTCTGATAAAAATTCCACCAAGGCTGTAATTTTGTTTCAGGAG---------ATTTTTTTTTTCCACACTGAAAAAAAACTTTGA---ATACTTCTGTATAAACATACACAAGA-TAGTTTAGGAATGAGTTTAACCTGTGTTTTCAA-TTGCAACATATTAGACAATTTCTGGAATAGCTAAAGTGTTGTCAGTGGTCTGAGCTCA-TATTTTTATT----------TGTTAGAATTAAAAGGAATTGGGTAGATTAAATATTCCTTATTAATTTTATCTAATACACAGTTATATAAAATCCTAAGACTTCTGTTTTCAACTTCAGCATTTATGCATTCTTCCT--TCAATTTGGGTGTTAAATCTACATGTTAGTGGTAGTTAGATTCTACCTTGTTTGAAAACTTCAAATGAATACTAT-GCTGTATTTGTGACTGTATTTAAAATACAAAGAACCTTTAATCTGTGCTAA-GTCAT--TAATACCATGTTATGATTTGAATATTAATTTCTTCTAA--AATATTCCTAAAAAATTTAGAGAGAAAACTAAAGGCTACATTTGTAGATTTCAATCTGTATTTGCTTTGAAATCTAACTAGTTTACATATGTAAAACAAGTCTACCTTTCTGTATGCATAAATAAGTCTTAATACTATCACAACAC-TGACTAGTTAATTAAAGTAATTAAGACTACTGTGGCTAACGATATGATTTACTATAAGAAACATGAGCAGAATATATTAAAGGCCACATTTCAACAATGAGTCAAATAATCAAGAGTTGAAAATATATTCTAAATTAAAATACAGCGaaaatatattacatcaattt---------ttttattc--ttaaaattgattattcttaaaattaataGGTGAAATTAAGAGA-AA--GTGTAAATAATATATCCTA---------CAAGACTTAACACAC-------TAAGGGACTTATATACACTGGGACTTATTGGCCaaaattatatataaataaaacataaaataaaataGTTTATTCATATTGTGAATGCTCTAGTGTATGTGT--TAGGAATCAGTCTT-ATGGTTTATGGTT--CAGAGTC-TAAACTTCCCTGGTATAAGTCTTTTTTGAAAGCAAGCTTT----ATTTCCCATCACACACCTGGAA------TATAG----TAATACACTT---------TTTTAAAAAAAAAATCA------ATTCAATTTCCTATTTCAACATTATTTTCTTGATGAAATTGAATAG--TGCT--TTATTTTTGAGTCTTTG-TTTAGTAATGGTAAAATTATGTCTTCCTGATAGACATGGGCA s rn2.chr5 129693493 1528 - 191625135 GTCtgtcaagaggccagcatttcatagtattccttcccataccctagcttgtacattcttcccatctcctcttgccatgttctctgagtcttcttcaagagggaggg--------gaggagagggaca-----tggattctccaactacagctaatcactcatggttgcctttaataacc---------agcgctgtgagtctctgtattccctactattctctgaaataggaaatttctctgtttgaggttgagtggaacaAAAATTTGT----ACTGGGAGCTAAGGGACCTTCATCGTTTATCTTTTGTTGCAATGTTTATTCTTATCTATAGAGTTCTGATAAAAATTCCACCAAGGCTGTAATTTTGTTTCAGGAGTT---TTTGATGTTTGCATTTCACACTGAAAAATA---TTGA---ATATATCTGTATAAACATTCACAAGG-TATTTTGGGAATGAGTTTACCCTGCACTTTCAA-TTACAACATATTAGAAAATTTCTGGAAGAGCTAAAGTTTTAGCATTGGTCTCAACTCA-TATTTTCCTT----------TGTTAGAATTATACAGAATGGTGTCAATTAAGAATTCATCATTAATTTTATCTAATACACATTTATATAAAATCCTAAGAATTCTGTTTTCAGTTTCAGTGTTTATGCCCTCTTACT--CCAATTTGGGTATTAAATCTACATGCTAGAGGCAGTCAGATTCAACCTTGTCTGAAAACTTCAAATGAATAGCAT-GCTATATTTGTGACTTTATTTAAAATACAAAGAACTTTTAATCTGAACTCATGTCAT--TAATTCAATGTTATA---TGAATATTAATTTTCTCTAA--AATATTCCTAGAAAATTTAGAGAG-AAACTAAAGGCTTTACTTGCAGATTTCAATCTGTTTTTGCTTTGAAATCTAACTAGTTTATATATGTAAAATATGTCTACCTTTCTGTATGCGTAATTAAGACTCAATACTAACAGAACACTTGACTTGCTAATTAAAGTAATTAAGATCACTGTGGCTAATGGCATGATTTACTATTAGAGACATGAAAAGAATATATCAAAGTCCAAAAT---GCAATTAATGAAATAATT--GAGTTCAAAATATATTCTAAATAAAATTAAAGAGAAAATA----ACATCACTTTAAA-GTTACTTTTATTA--TTAAAATTGATT-TCCTT-------ATAGGTGAAATTAAGAGA-AAATATGTAGAT-ATGTATCCTA---------CAAGACTTAACACAC-------TGAGGT-CTTCTATACACTGGAACTTATTGGCCAAAA----ATATAAATAAGAAGT---ATACAAGAACTTATTCATATTGTGAATGCTCTAATGTACATGT--TAGGAATTAGTGTT-GTGGTTTGTGGTTCACAGTGTC-TAAACTTTCCTGGTATCAGTCTTTTGTTGAAGCTTTCTTTACTGATCTCCTATCAAACATTTGGAA------TGTGA----TAACACATTT---------TT---GAAAAAAAATCA------ATTCATTTTCTTATTTCAATATTATTTTCTTGATGAATTTGAATTT--TGCC--ATATTACTGAGTCTTCG-TTTAGTCCTAGTAAAATTATATCTTCTTGATAGACATGCACA a score=35421.000000 s hg15.chr4_random 1189282 513 + 1219494 ATGAACTTTATAGATTTTACATT---CTC---AACTTTCACTTATTTTCAAAA---------------TGAGAGACAAGACACCTAAACTCCAAG-ATTTCAGTCCTGAATGCAATAGTACCAGATT---TTCAAGTTACAT-------AAGTGAACTGCATAAACATCATTAGTTTCAAGTGTACCCTATAAGAAACACGTGGACATACTTGCGTTGTTTAACCACACGGTGTCATATCAATAAACATCAAAGTATCTGACATATATTTGT--CCATTAAAAGTAAACACAACTC--TGAGTATCAAATTAAATTAATCATTTGCCTTTTATAATCTAAATCAGAA-ATTGAAAAAC----AGGAACATTGTAGAGGTAAGTGGCTGAAAATGCTCTGCTTACTGCACACAAGCACATCATGACAAAGAATGCTAGAAGTAGCTTTCCTCAGAAGTAATAATTGAACATTTAAAATATTATTTTCTCACAAAAGTTAAAGCTTTTAGTGTAAAAGGCATGGTAAATGACATTTTAACTTAATAGTTAGCTATA s mm3.chr10 71878496 441 - 130738012 ACAAACTTCACAGATTC----TTAAACTCACAAACTTTCACTTACTTAAAAAAAAAACAACCAAAAAACAAAAGACAA-ACATC-ACATTCCAAT-ATTTCAGGTGTGAATAAACTAGTACCCCGTTAGCTGCACTTTACATACCATAAAAGCAAACT-----GACATTCATAGTTTCAAGCGTACC---TGGAGGACACATAAACTT------GTTTTGAAACTACACAGTCTCTTGTCAACAGA--------TGCCTG-TATTTATCTATTGCCATTATTGAGAGATACAACTTCATATTTATTAAATTATACGAATCATTT---TTTTCTACTCTTGATTTGGACATTGAAAAAAAAAGAGGAA-----TGGTGTTAAGTAGCTTAAAATGTCATATTTACTGAATA-AGCTACATTATGACAAGGAATGCCCGGAGTTCCTTTCGGG-------------------------------------------------GCTTT---------------------TGAAATTTAAAC----TAATTAGCTTTG s rn2.chr20 560931 418 - 54947872 ACAAACTTCACATATTCACATTT---CTTGAAAACTTTCACTTACTTAAGAAAG--------------CAAAAGACAA-ACATC-ATATTCCAATTATTTCAGGTGTGAATAAACTAGTACCACATTAGCTGCACTTTATATACCATAAAAGCAAACTT----GACATTCATAGCTTCAAGCATAC------------ACATAAACTT------GTTTTGAAACTACA--GTCTCTTGTCAACAGA--------TGCCTG-CATTTATGTATTGCCACTGTTGAGAGATACAACTTCATGATTATCGAATTATACAAATGATTT---TTTTCTACTTTTGATTTGAAAACTGGAAAAAAAA-AGGAA-----TGGAGTTATATAGCTTGAAATGTTATATTTATTGCATA-AAGTATGTTATGACAAG-AATGCCTGGAGTTCCTTTTTTG------------------------------------------------TGCCTT---------------------TGAAATTTAAAC----TAATTAGCTTTG a score=25909.000000 s hg15.chr4_random 1189795 392 + 1219494 TAGCAAATTACAGATTTCAAGCAATTAGTTACCCACATTTCACCAGAACCTTCAGTGAAAGTGTCTACTCTCAACATTGACCAGAACCTTCCTGTTCTGAAGTGTCTACTCT-TTAGAGTTGCTTCAGCTTTACGTATCTGTAAAACCTAAGATTAATCAATGAGAAGTTACACCTTATTCTGTACTAGATACACATAATATATATA-GATTTAGAACAAATGGATGTTTTTCAACTTCAAAAAAATATTTTAATTTACACAATGTTAGATTGTTTTTCACCCATGTGTATACATAACAGTGTTTCCCAAATTCACAGGGTCCATTTCCATAATTCTAAAGCAAAAATAGAGGCACACAAATGGATAATAATTCATAGTTTTATGCCTTTTTTT s mm3.chr10 71879104 307 - 130738012 cAG-GAATGAC-----TCCAGAAAAAATTTA---ATGTTTTATCATAGTTTT-------------------------------AAACATT--TAGTTTGAAAAGCAAGTTAA-TGATAGTTGCCTTATCTTAGC------ATGGAATTTAAAAGTCCTAGATGAGAACTGTAAGCTTATTTGGCACTAGATATAGCTAACACGTCTAAGACATGGAACACATGATTGCTT------------------------TTTACAT---------TGGCTTTTCACTTAAGTGTACAGA-AAAAGTGCTTATC-AATGTACCCGATCTACTT---AAATCCTAAAACAAAGATAAAGGCACATAAGTGGGTAGCAACTTATGTGTGTATGTGTGTTTGT s rn2.chr20 561523 298 - 54947872 -----aatgac-----tccAGAAAAAATGTA---ATATTTTATCATAGCTTT-------------------------------TAACCTT--TACTGTGAAAAGCAAGTCAAATGGTAGTTGCTTTATCTTAAC------ACGGAATTTAAAAGTCCT---TGAGAACTGTAAGCTTATTCTGCACTAGATATAGTTAACATGTCTA-GACATGGAACA--TGATTGCTT------------------------TTTACAT---------TGGCTTTTCACTTACGTGGACAGA-AAAAGTGCTCATC-GATGTACATGATCTACTTCTTAAATCCTAAAACAAAGATGAAGGCACATAAGTGGGTAGCAACTT---tgtgtgtgtgtgtgtgt a score=127963.000000 s hg15.chr4_random 1190187 1205 + 1219494 AACCTATCTT-----TAAAGAAATTCAGTTGCCATGTAGACAA-----------AGATGTGATGAACCTGTAACAAATTTCTATGACTTGGAAAATTAAAGGTCTAAAAATCCTAAATGTAGT--AGCTCTGGGCAGTT-TGCAATTTGTGCATGGGTTCACTCACCCTATGGTCCGTGAACTC---------CCTTATCCTGCAAGCTGTAGGTAC------------TTTCAGCAAATATGAGACTCAATAAGACT---AAGGAAGGGCTTGTTTAAATTAGTTCCCCTCACAGTTGATTCTAATCTTGCAATGAACAGATTTAATGTACTAGTGAGTTAAATTTTAAAGTAATTATAAAGCCATTTACTC-TATCATAAATGAATGAAATGTAA----GAATCATACTTAAAACACGTCTTTCATTTTAATGAATGGTATCTTTCATTTATATACAAAGGAATTCACTTGCCAGCAGCATTTAAATATAGGAATAGTCTCGTCTTTTCTCTAGTGCCTTTTATAAAGCAGTG--------CCATTTCTAACTAGGTGTATTTGTCTCCTAGCTATTCAGTAACTACACTATAGGTATCT-AATAGATTCAAGAAAAGATTGGAAAATTGAGAAGATTTAGCATTTTAAACATTTGAAAAATGTTGCTACAAAGCATAGA--TTATGAATGCATTAGTAAAATAAATTGACACCTTATGTGAGAATC--ATTAAGTTGGTT---TAATTATATCACAGAAGTATG----------------------GGCTCACTAATATTTATACCA------ATTTA--TGCTAATTAAACCAGAAAGTTTCTGTAGGTAATTCAGCTCTGAGCACCATTTAATAGGGTT-AT---------GCCAAACAGAACCAATGGTTATATAATACCCAGAATATAAACCTCAGCAAATTCATACTTTTGGAATGGCAACACAAGTGAGAATGAGAGGCAATATTTCATTT---------CAAAGTACCATAGGCTGCTA-------------------AGAGTGTTCTTTTCTTTTAAA---AATTTGTGTGGTTGTTAGTAATGTACCTTAACACTGGTCCTCCTTGACAGCGGTGTTAGAGATGGTTAGGTAGAACCTATATTACGG--------AAGTCAGCCTTGCCCATTTCTTTAGTTCAGTGATTAAAAT-TGAAATTACTTTTACAAAACAATT--GAACTGCTGCTTACAATATAAACAGAA---TACCAACAGGATTCCTGT-TGTATTCACATTATTCTCTAATTAGTATTTTTACATTTCCACTCTGACCTGACCTTCAGTAGTTCCTTTATT s mm3.chr10 71879710 1178 - 130738012 AACTTATATATTTCATGAGCATCTTCAATTCACATTTAAAGAAGTGCTATTTTGAGATGTGACAAATTTGTTAGAAATCTCTATGACTTGGGGAGGCCA---GTTAACAA--CAGAATGCTGTG-AGCTCTGTATAACCACGCAGTC------------------CCCTCGACTCTGAGGACTTGGCTGCTTACTCTGCCCTCTATGTTGT--------------------------------AGGC-CAGAAAGACT-AGAGAGAAGGATTTGGTCAAACCAGTCTCCCACAGAA--GTTTCTACTCTTGTTAT---AAGATTTAATATGTTTGTAAGttaaattttaaaataattataaaGCCATTTACTCTTAGCACAAGTGAATGGAATGTAATTACGGATCACAGTTGTAA-AAGTCTTTAATTTTAAGGAATAGTATTTTTCAACTATATATAAGGAAATTCAATAGCTAGCAGCATTGAAATACAGAAATGGCCCCATTTCTCTTC-----CtttttataaaatataataaattGCCCATTTTTAAATGGGCAGACT----ATCTAGGCTTTCTGTAACCACACTATAGTTCTTTGAGTACATACAAAGAAACATAAGAAAAGTGA-AAGATTTAGTATTTTGCACATTTGTAAAATGTTGCTACAAAGCATAGAGGCTATGAATGTATTAATAAAATTAAAATGTCTCTTACATGAGAAACATATTAAACTGATTTAATAATTACTTCACAGAAGCATA-----------------------TTTTGCTATTTTCTAAACAAGGAATGGTTTAGGTGATAAGTAAATCAG--------TTTAGGTGA--------TAAGTAAAGTATTGTAAGCTTCATAAACAAACAAACAAACAAAATC---------------CCCAGAATACAAACCTCAGAAAGTTCAGAATTTAAGAGTAGCAAAACTAGTTGG--TGATAATCAACAAGACATACACATTTAAAAAAAGTACCATAGGTTGCTATGTGCTCATCTATTTAAATAAA-TGTCTTCTTCTATTGAACCAAGTTTGTA-----GTTAATAATGTACCGT-ATAGTG-----------------TTATA--------TAGGCACAAACCAGATTACAGTAACTTGAAAGCAAGTGCTGCTTCCTTCTTCAGTTCAGTGATTAAAAG-TAAAACTGCTTTAAAAAAAAAATTGGGAACCGCTACTTACAATACAAGTAAGACGTTATCAGTGGGATTCCCATCTCCGTTCACATAATCCTC--CTTTGTAGTTTCACATTTCAACTCTGACCTTGCC------------CTTCTT s rn2.chr20 562112 1189 - 54947872 AATTTATATGTTTCATGAGCATCTTCAATCCATACTTAAACAACTGCTATTTTGAGATGTGACAAATTTGTTAGAAATTTCTATGACTTGGGAAGGTTA---TTTAACAA--CAAAATGCTGTGCAGCTCTATATAACCATGCAGTC------------------TCCTCCGCTCTGCAGGCTTGGCTGCTCACTCAGCCCTCTATATTATGGGTGCTAACAACTTAGGTTTCAGCA---ATCAGGC-CAGAAAGACGGAGAGAGAAGGATTTGGTCAAATCAGTCTCGCCCAAAA--GTTTCTAATCTTGCTAT---CAGATTTAATACGTTTCCAAGttaatttttaaaataattataaaGCCATTTATTCTTAACACAAATGAATGGAATGTAATTAAGGATCACAGTTGTAA-AGGTCTTTAATTTTAAGGAATAGTATTTTTCAATTATATATAAGGAAATTCAATAGCTAGCAGCATTGAAATACAGAAATGATCCCATTTCTCTTT-----CTTCTTATAAAGTATAATAAATTGCCCATTTTTAAATGGGCAGACT----ATCTAGGCTTTCTGTAACTACACCATAGCTCTTTGAGTAGATACAAAGAAACGTAAGAAAAGTGA-AAGATTTAGTATTTTGCACATTTGTAAAATGTTGCTACAAAGCATAGAGACTCTGAATGTATTAATAAAATTAAAATGTCTCTTACATGAGAAACATATTAAGTTGATTTAATAATTACTTCACAGAAGCATAGGCTTATTAATACTTATGCTGAGTTTTGCCATTTTCTAAACAAGGAATGGTTTAGGTGATAAGTAAATTAG--------TCTA--------------------AGTATTGTAAGCTTCAT-----------CAAAAAGAAAC---------------CCCAGAATACAAACCCCAGAAAGTTTAGAATTAAAGAGTAGCAAAACAAGTTAG--TGATAATCAACAAGACATTCACTTTAAAGAAAAGTACCAGAGGTTGCTACATGTTCTTCTACTTAACCAGA---------------------AGTTTGCG-----GTTAATAATGTACCGT-ATACTG------------AATAGTGTTA--------TAGGCACAGACCAGATTACAGCAACTCAAAAGCAAATACTGCCTAGTTCTTCTGTCCAGTGATTAAAAAATAAAATTGCTTTTAAAGGAA----GGGAACTGCTACTTACAATATAAGTCAGATAATATCTGTAG-ATTCCCATCTCCAGTCACATAATTCTC--ATTTGCAGTTTCACATTTCAACTCTGACCTTGAC-------------TTCTT a score=27347.000000 s hg15.chr4_random 1192112 321 + 1219494 TAGTACCTTAAAATGCAAATGCAATTGGTAAAAGAACAAAGCAGCGTGTAG-TGCTTGCACTTACAAATACTACCAGTTTTGTAACAATTTGCATT----TTTTTTTTGTCCTTGAAAGAGTAACCATTTACTTAATAAAACGGATATTTAAAAGTGCAATATTCCTTCCTTTGCATGGCATGCA-GGAATGGT--GAAAGCAAA-GAAAC----AGTCATCTCTTCTCTTCCCCCCACTTCTGGTCCCCCGAAATAGGAATGCCAGGTCAGACAGGTGGAGGAGGGAAATGGGGCACAGGTCAAGGTATGATGAATCTCTTAAAAAGAAATCC s mm3.chr10 71880888 265 - 130738012 TAGCACCTTAA---GCAAGTGTGCATAGCAGAAAATCAGGGCAGCCTCTAGTTTCATTCACTTACAAACATTAGCAGGTT-----CAGTTTGCAATACCATGTGTTTTG----------------CATTTTCT-------------------------CATGGCCCTTACTTTGCATGGTATCTC-GCAATGATTAAAAAGCAAATGGGACTCTTAGTCATCAAT------------AATTCCAGTTCTC------ACAAGTTCCAGGTTACCTGGGTGGGGTTGGGGAA-GAGGCACAAATCAGTGCATTATGAATCACTTCAGAGACATTTT s rn2.chr20 563301 263 - 54947872 TAGCACCTTAA---GCAAGTGCGACTGGTAGAAAATCAGGGCAGCCTGTAGTTTCATTCATTTACAAA-ATTAGCAGGTT-----CAGTTTGCATTACCAGGAGTTTTG----------------CATTTTCT-------------------------GATGGCCCTTACTCTGAATGGTATCTTAGTAATGATTAAAAAGCAAA-GGGACTCTTAGTCATCAAT------------AATTCCAGTTCTC------ACAAGTTCCAGGTTACAAGGGTGGGGC-GGGAGA-GAGGCACAAATCAGTGCATTATGAATCACTTCAGAGACATTTT a score=7677.000000 s hg15.chr4_random 1192750 39 + 1219494 CTTTCCCCAGAATGCTAGCCTGATAGG--------AACTCCACCCCA s mm3.chr10 71881153 47 - 130738012 CTTGCCTCAGAATGCTATCCTGAAAGGATTATTACAGATCCACCCCA s rn2.chr20 563564 47 - 54947872 CTTGCCCCAGAATGCTATCCGGAAAGGATTATTGCAGATCCACTCCA a score=22030.000000 s hg15.chr4_random 1213161 286 + 1219494 TTT-AAGTC-CACTTAAATTCTATTTTAAGCCACCATCTGCCAGTGCTGTTAGGGCAGTTAGCCTTCAATCATTTTAAGATGGTCCCCTCTAAGTACCGTGATAGTGATAGAGATATCACCAgtcaggtgtcctaggaagccgactccgagttggagatttgcatgcaaggaggttgaaatgatattcccaacacctgtgggagagtgaaagcaataggattgggcggagcaggaagtcggctagaatgcaatcactatcatggctgcagtccactctacagggatct s mm3.chr16 22993435 254 - 98986639 TTT-ACATC-TTCTGGATTTCTATTTTAAGCCACCTAACACTTGTCACAGCATAAAAGTTTACCTCTGTTTATGTTCCATTGTCCATTTCTGGATTATGTGATAGGTACAGATATGGGACCA-CCAGGTTTTGCAGG-ATCAGGCTCTAAG-----GATACATAAT--------------------TCCCAACACTTGTATAGGAGTAATGGCTCTAGGACCACATAGAGCAATGTGTTCTCTAG-----AATCACCAGAATGACATCATTCTACCCAATGGAGATTT s rn2.chr11 74244267 263 + 88445885 cttGACATAATTCTGTATTTCTATTTTAAGCCACTTTCCATTTGTCCCAGCGTAAAAGTTTACCTCTGTTTGTATTCCATTGCCCATTTCTGGATTGTGTCATAGGTACAGGCATGTTACCA-CCAGGTTTTCCAGA-ATCAGGCTCTAAG-----GATTCACAATGA-------------GATATTCCCAGCACATGTATAGCAGTAAAGGCTGTAGGACCACGCAGGGCAATACGTTGCCTGG-----AACCACCAGAATGCTATCATTCCACCCAATGGAGATTT a score=19335.000000 s hg15.chr4_random 1214670 205 + 1219494 TTAGACCAAGAGCTTGTAAAAGCCAGAAGACATACACCATTTATAGTTCAATTAGAGATGTTCACTGATAAAACTGATTCTTCCATCTGAGGGTGGTATTTGTAGTTACAGTAATGTAGATCACAATCTAAGTTATGTTCTATAAACT----GTGTCACTGACATCTCAATCTACAGCTAACTTTGATTTTTTAAAAGC---AGAGGAGTGG s mm3.chr16 22994332 194 - 98986639 TTAGACCAAAAGCTGTTTAAAGCCAGAGGCTGTGTTCTGTCTGCCATTTGAAGAGAGAGACTGGCTGAT-GAACACAGGCTTCTGTCCTGCAGTGACATTTCTATCTACAGGAATGTAAGCTACGACCT----------------GTTTGACATGACT-TGACTCTTGAATATGAAGTTATCTTTAATTTCTCTAACGATGGAGATGAGTTG s rn2.chr11 74245220 187 + 88445885 CTAGACCAAAAGCTGTTTAAAGCCAG-GGCTGTGTTCTGTCTGCAGTTCGA--AAAGAGACCGGCTGAT-GAACACATTCTTCTGTCCTGCAGTGGTATTTCTATGTACAGTAATGTAAGCTATGACTT----------------CCT----ATGACA-TGACATTTGAATATGAAGCTATCTTTAATTTCTCTAAAGATGGAGAAGAGGTA a score=59702.000000 s hg15.chr4_random 1214879 1155 + 1219494 TATAGGTTTAGAAATACATCCATCAAGCTAGTTAAGTGAGATGGATTCAAGCCTTCAACTCACTGGAATATTTACC--AAATTGACTATTCATTAGCTAAAGGAGC---CATA---TAAA-----CAAGGTACTT------TTTAAAATTCAAAATTATG-TAAGGTTTTATTTCCTTTTTATGTTGTTATGAATTGGATTGTAGAGGTTATAAGGTAAAATAAGATTACTTTTACAGTAAAACATACAACACATTGTCGCAAGAGGGCAGCCTTTGAACACGAATTGCTTCTCAGGCAT------------------------------------------TCCTTGAAATTTTGAGAGTTACTTTAATTAACACAACAAAATAATAAAACACTACAGAGGATCTAAGAAGATACTTTGACTTATGCATATTGTTACTTTTTTATTACTGCTAGTGGAAGATGTAATCGACAAGAAAGGTAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATT----TCTTTGGGTTTTAGCTTTCAAACATCAAGATAGTAGGTCAATGTCTA---AATGAGTGTATCAAAGTTCTCACAATGGCACAT------GTAAATCCACCTCTTGTCTACCCAAAACTCTAACCAAGCAAAGGCAAGTTGGAAGAATCAGACAAATGTAAGTCCCTAGGATACATAAATGCCACGGGATTTTATGTTTTTA-ACTTTCAACCACCTAAGTTTCACTAAGAGACATGTTATTTGGAGAGGTTGCTAAAGTGTATTTGTATGATGTCTCTGTTTACGGTTGGTCTGGACCTCTT---TCTGTCCAGTGGTTGCCCTCAACTGATGAGAGTTACCTCTCTAAAGATCATGCTTACGTCTCTGGAGCAGACCACAGCACTATCAATGTCTGACGTCCACC-TTTTTCCAATTAATATTT----CTGTACTTACTGAATTGGAAAACATACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTCCCCCCGCTTCCCCACCACTG--ccccaggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTGGCAGACAGCAGCAAAGGCCCAAATCCTCTGTGTGATTTCAAGACCCGTATCTGGTTTTCAGCCATATTTCCTTCTCCTTCTCACAGCTGAGTCCACTCCTCCTCCCTCACCACCTGTAGGCTATGCTTTCCAGCCTG-TGT-----CCAGG-------ATTAGT----- s mm3.chr16 22994916 1067 - 98986639 TATATTTTACCAAATCTAAACATCAAACTACCTACATAATAAGATTTTAAACATTAAGTTTCCTGAAATATCTACTGAAAATTAAATGGTGATTAAAAAAAAA------CACA---AAAAAGGCCCCAGGTATTTTTCTGCTTTAA--CTCTAAACTATGCTATGATTTTA----CTTGTTAAGGTATTGTGAGTTAGATTGTGAAGG----------GAATCACATACTTTTACTAGTAAA--ATATAACACATTGTCACAAGAGGGCAGTCTTTTAAAGGAAATTTCTTCACAACTGTAGGGCTTGAACAGGCTTCTT-TTGCTCCTGCTATTTGTTTTCTGTTTGGAATTTCCAGG--TAGTTAATCTAAAACTAAATACTGACGTGACAATCCATGGTTGTTGAGCAAGTATTTTGCTCTCTGCAAGCTTTTATCTTTATATCACTGCTAATCTAA---ATGATTGATA-------CATAGGCTAAACCAG----AGATGGAAGGTCTCACTCCCCTCCGTAGGTTGAGGTTTTAAAATGTCTTTGGAGAAAGTCATGCTCAGTACACTGAGTGTATCAAGGTACCCAGGTAAATATATTTATCTGTGAATGCATCTCTGATCTAACTCCAATTCAAATCTAGCAGACATTACAGGGCAA-GTTAGAA--------------------------------------TTGCAGTTCTG-GTTTTCAGCCTTTTAAACGTCA-TAGAATACA-GCGCTTCCAAGACGTGGTTTCAGGGTA--TGAATGGTCAC------TTTTCCTGGTCATGATCTCTT-AGATTTGCCAGGAACTCTCGGAAGTTTCTGGTCACTTCCTCACCAATGACTGTCCATAGTCCTGCAGAG------GCAGCACTG-------CAGAAGTCAACCACATGTTCAGAAGTAGCTTGAACTGGCACTTCCTAAATTTGGAAAT-TGCAA--GGCTGGTGCCCAGCATTCCGTGG-------------------------TGTCAGGGACCCCCAGGTGTG--TGTTGCAAGGTA-----------------GTAATTGCTGGCCAAGCTCAGGCAA--CCCAAATCCT--------TCTCA-----------CAGTTTATACGTTCATTGCATTGTCTAGTCTGCAGTTGGGTTCCTG----------------GGGAAGGTGATGTTGTTCGGGCTGATTTTAACTCGAGGCAGACAAATCACCAGTGT s rn2.chr11 74245407 1078 + 88445885 TATATTCAACCAAATCTAAACACCAAACTACCCAAATAATGAGATTT-AAACATTAAGTTCCCCAAAATATCTACTGAAAATGAACTTCTGATAAAAGTAAAAAAGTATCACAGAAAAAAAGGCCCCAGGTGTTT---------AATCCTTTAAACTATACTGTGGTTTTA----CTTGTTAAGGTATTGGGAATTGGATTGTGAAGG----------GAGGCACAGATCTTTCCTGGTAAA--ATATAACGCATTGTCACAAGAGGGCAGCCTTTTAACAGAAATGTCTTCACAGCCATAGGACTTGAGCAGGTTTTTTACTGCTCCTGCTATTTGTTTTGTGTTTGAAATTTCCAGG--TAGTTAATCTAAATCTAAACGCTGACATGTTAATCCACGGTTGTTGAGCAAGTGCTTTGCAGTCTGCGAG-TTTAATCTTTATATCACTACTAATCTAA---ATGATTGATA-------CATAAGCTAAACCAG----GGATGGAAGGTCTCCATCCTCTCTTTAGGTTGTGGTTTTGAAATGGCTTGGGAGAAAGTCATACTCAGTACACTGAGCATATCAAAGCACCCAGGGGAATATGCTCACCGGTGAATGTTTCTCTGATCTACCTTGGATTCAAATCAAGCAGCAACTATGGGGCAACATAAGAC--------------------------------------TTGGAATTTTGAATTTTCAGCCTTTCAAGCATCA-TAGAATATG-ATGGTCCCGAGACTTGGTTTTAGAGTG--TGAACAGTCCTCCT-CGTCCTCCTGGTCTTGATCTCTTGAGACTTGCAAGGGAATCTCATAAGTTTCTGATCACTTCCGCACCGACGATTGCCCTTAGCCGGGTAAAG------GCAACAATG-------CCAAGGTCAGCC-TGTGCCCAAAAGCAGCTTGAACTGGCACTTTCTGAATTTGTAAAT-TACAA--GGCTAGTACCCAGCATTCTGCAA-------------------------CACCAGGGGCTTCCAGTTGTTTCTATTGCAAGGGA-----------------GTAATTGCTGGCCGAGCTCAAGCAAGGCACAGATTTT--------TCTCA-----------CAATTTACACGTTTATTACATTGTCTAATCTGCAGTTGGGTTCACT----------------GGGACACTGATGTTGTTCGGGTTG-TTTGAACCCGAGGCAGACAAACCACCAGTGT a score=24355.000000 s hg15.chr4_random 1216034 213 + 1219494 CCTGATGTAAGGCACGTGGGGTTTAAGGAGCTCTCTCTTCAGTCTTATTTCCACACCATCTCTGACAGATATATTCCAGTTGTAATCATGGGGCTACCTCCTCTTGTTTCCAGTCCCATGCTCGTTTTCTCTATCACATTCTACCTTGTAATAACCTAAATCTTCTGGTGGGCAACCTTC-TTCCTCAATCAAATTTGTGTTTATGATTGTGTT----- s mm3.chr16 22996099 196 - 98986639 cTAGGCAGAAGGCAGGTAAG----AGGGACTCCTCTCT----------------GTCATTCCTGACAGATTTATCCTAGGTGTAATCCTGGGGCTAGCCTCT-TTGCTTCTAGCCCTGTGATCTATCTCTGTACAACTTTCAACTTTGAAATGACTTCAATCTTCTAGTAGGTAAGCGCC-TCTTCCAGTTATTTTT-TGTTTCTGACTTGGTGTTCTG s rn2.chr11 74246602 198 + 88445885 cTAGGCAGAAGGCAGTTAAG----AGGGACTCCTCTCT----------------GTCATTCCTGACAGATTTGTCCTAGGTGTAATCGCGGGACTAGCCCCT-TTGCTTCTAGCCCTGTGATCTATTTCCCTACAACTTTCAACTGTGAAATGACTCCAAACTTCCGGTGGGTAAGTGCCTTCTTCCAGTTACTTTTGTGTTTCTGCCTTGGTATTCTG a score=1143.000000 s hg15.chr4_random 1216247 98 + 1219494 ---GGGGATTGGCATAGTAA-TCCAGGTACTGC--TACTGCCTTGAAAG-CGGAGAATGCATCCTTCTGTCTGGATATCT-TGAGTTTCTGGATTGTAAACCTTAT s mm3.chr16 22996295 105 - 98986639 TAAAGGGTTTAATATATCAGTTCTAATCGCTGCAGCATTGCCCTCAAGGTTATTGCTTGAATTCTTCTGTGTGGTTTCCTCTGAGTTTCAAG-TCATAAACCCAAT