##maf version=1 scoring=multiz a score=91072.000000 s hg15.chrUn_random 300959 697 + 611077 GGTCTCTCATCTTGTAAGATGGATATGACAGAACTTTCTCTGAGAAATGAAATTACTAACACACCTGCGAGGTGGATGGAAGAGAAAAAAAAGAATAATCAGCTTGAGT---TCTTCTCCTTGATAAGACAACTCACTAAAAACTTAAAGAGAAAAA----TACAAGTTTAAAATAATTAACAAGAAGAAGACGACTCTAGCGTTTTTAAATTGCTGATAAGATTTTAATTTGCTCCAAGTTGAAAATAACTATATTGCTTGTGTTTTAAGGCACATAATGAGCAATTATATCACACATGATAGTTTCAGCAGTAAAATATTATCCGTTAACAGCTGGAACTCATAAAAGCATAGCACAATGTGAAGATGGAATTTGCTAAAATAAACCACCTGCTGAAAACTACTATTCTGCAAATTTAAAAACAAAGTT-TGAATGTTATTTGTCTTATTTAAAAGGTTTGTGAAAAA-AATGAGCTATATGAAAAGTAGCTGCTACCTTAATTAATTCTTTATATTAGACGGCTGGTCACAGTAATGCACAGTAAGGTGCTACATAGATATATTGCAAAATTTTCTGCATATACTATGTATTTGGCTTAAATTATTTGAAA-----TTATGTAGTTAAAATAACAAATGCATATTTAAATGTTTTGACACAAATTGCAAATATACCTTTAAAAAGCGTCTTACACTCTAAATATTATA s mm3.chr11 108086147 640 - 122862689 GACTTCTCACCTTGCATAATAGTTACAAAGCCACATTTCCACAGAGACATAACTGTTAACACACCTGCGAGGTACATGG-AGAAAAATAAGAGTTT----------------TTTTTTTCTTGACAAA-----TCACTAAAAAATTACAAGGAAAAAGAATCACTACTTTTCTATCATTAATCAAAAGGAGACAACTGCAGAATATTTTAGGTGCTGATAAGATTTTAATTGGTTTCAAGTTGAAAATAACTACATTGCTGATGTTTTAAGGAATGTAATGAGCAATTATATTACACACGATAGATTTAGCAGTATAATATTACCAGTTAACAGCTGGAACTCATAAACACACAGCACAGTGTGAATGTGAAATTTTCCAGGATAAACCATCTGTAGCAAAGAACTATTCTAGAAATTTAAAAAGAAGGTGAAAAATGTTATTTGCCTTATTTAACTGATCTGGTAAAAATGATGAG--ATTTTAGAAGTAGTTGAA-TCCTATTTAGC-------------TAGTTGTTTAAAATAGCATAGA------------CAAGGAGTATACCAATATTTT---CACATCTCATGTAGTTAGT-----TTATTTGAAGATAGTTTTTATAA----ACTAGTAAATGTTTATT------CTTTCATATAAAATC---ATGCTCCTTTATGAAGTTTTTAGCAATTTACATTCTACA s rn2.chr14 16135272 681 - 107821284 GTCTTCTCACCTTGTATAACAGTTACAAAGCAACATTTCCACAGAGACAGAACTGTTAACACACCTGCGAGTTACATGA-GGAAAAATAAAAGATTAATCAGCTTGAGGATTTTTTTTTCTTGATAAA-----TCAGTAAAAAATTACACAGAAAAAAAATCACCACTTTTCTATCATTAATCAAAAGAAGACAACTGTAGAA-ATTTAAGATGCTGATAAGATTTTAATTTGTTTCAAGCTGAAAATAACTACATTGCTGATGTTTTAGGGAACATAATGAGCAATTATATTTCACACGATAGATGTAGCAGTATAATATTACCAGTTAACAGCTGGAACTCATAAACACACAGCACAGTGTGAACATGAAATTTGCTAAGATAAACCATCTGTAGAAAAGAACCATTCTGCAAATTTAAAAAGAAAGTGAAAAATGGTATTTGCCTTATTTAACTGATCTGTTAAAAATGATGAG--ATTTTAAAAGTAGCTGAATTCTTATTTATC----CATATTAGGCAGTTGGTTAGAATAACAAAGAGAAAAAAGCTACTAAGGAGTTTACCATTATTTT---CAAATCTCATATAGTTAGT-----TTATTTGAAGATAATTTTTATAATTAGACTGGTAACTGTTTATT------GTTCTCTATAAAATG---AGGCTCCTTTATGAGGGTTTCAGCAATTTACATTCTACA a score=35014.000000 s hg15.chrUn_random 308380 424 + 611077 TGTCACAGTGAGAC----TGTTAAGTCTTGATTTCCCTGGACAACTTCGCTGCATGACTTTTAATATGATTTTTTAATATACCCTTTA------CTGG-ACAATAAATTATATCATTATCTGAGTAAGAGATATGGTCAGGAAGAGGCATTGCCTCATTCAGCTTTTCTCTTTGGTGAACTCGCATATGTTCTCCTCATCCAC--CAGTCACCTCTAAACCGTATTGTT-CTAAGACAGCAAACAGAACT----CGAGTGTGT-------ATCTTTCACCACTGGATTTGTGTTTGCTCCATAAAGCTTCATGCTTGATAGGGTTTCTGTTGGCATTTTGTCTATTTATTTTCCCATAAAATATCACAGACCTTCTTCATATGGAATTACGGGTGATTTCCTTCAGTCTGCATCATATCAAGTT-----------GGGGTTCATGTTGA---------------CGAAAAGTAAA s mm3.chr11 108090277 448 - 122862689 TGTCACAGCAGAGTGATACATCCAGCCTTAATTTACCAGGACATGTTAGTGAAAT--ACTTGACTTTAATTTATAAATAAGCTCCATAAACTGTCTAGTACTATACATGATATGGTTATTGCTGTAACAAATA-----CTGAAGAAGCATTGGC------------TATATTTGATGAACTAGCAAATGGGATCATTTTTTACCACACCCATTTCT-ACCCATATTATTAAAAAAAAAACAAATAGCACACTACCTACTGTGT----TGTATATTTCACCATTGAATTTGCATTTGCTTAATTATGCTTAATACTTAA-AGGATTTCTCCTAGT-TGTTTTATATTTAAGATTTAATAAACTATCATAGGTTTTATTAGTATAG-ATTATGTCTCACATTCTTCAGTCTACTTCACTTCAAGCTTAAAATGCATGGAAGTACATGTAAAGAGCTAATTTTAATACCAAGAATAAA s rn2.chr14 16148231 439 - 107821284 TATCACAGCTGTGCTGCATGTCCAGTCTCAGTTGATCAGGACATGTTAGTGATAT--TCTTGCATTTAATTTACAAATAAGCTCCATAAATTGTCTAATACTATAAACGATATGGCTATTGTTATAAGAAATG-----GTTAAGAAGCATTGGC------------TATATTTGATGAATTAACAATTGGGCTCTTTGTTTACCACACCCACCTCT-ACTCATGTTGTT-TGAAGACCACAAATA---------CCGCTATGTAGTATATATATTTCACCATTGGATTTGTCTTTTC-TAAATATGTTTAATACTTAA-AGTATTTCTCCTAGC-TGTTTTCTATTTAAGATCTAATAAACTATCACAG--TTTATTAATATAG-ATTATGTCTCACATTCTTCAATCTACTAAAATTCAAGATAAAAATGCAAAGAAGTACATGCAAAGAAATACTTCTAATGTCAAGAATGCA a score=2227.000000 s hg15.chrUn_random 308812 119 + 611077 TGAAAATATCAGTAAGGATGTTTTCCTCTCCTT--TTTAGCACCTGTGCTTG-------------------------TG-ATACAAGCACA--------TTTT----------------------------------------------AATACAATTGTGGTCTCATGCTTTGATCATTCCTATGATGAAAATAAAATTT s mm3.chr11 108091004 132 - 122862689 TTAAATTA-----AAGAATGCATTCATTAGATTATTTTAT---GTGTAGTTG-------------------------TGAACATCATTCCA--------TTTA----------------------------CTCAGTATGTTGAAAGACATTACAATTCTAATTCCAAGATTTGAACTATTATAGAATGACAAGTATATTT s rn2.chr14 16148920 193 - 107821284 TTAAATTA-----AAGGATGCATTCATTGCATTAATTTAG---GTGTAGCTGCAATAGGAACAATTAAATAATCAAATGGACACAAGGCGACAGATTGTTTTACGTGGAAGTATACTGTGAGTAGAATACCCTCAGTATGTAGAAAGATAAAACAATTCCAATGATAAATTTGGACCTGTTATAGGATAACAAGTATATTT a score=29142.000000 s hg15.chrUn_random 308933 381 + 611077 AGACAAAATATCTGAGTTTTATGAGGCCTTTAGTATGTGATGTGATAG----AATATCAGAAGACCATACTTTTTTCTAGTTTTCCGTGCAATTCTTTCATTGTTTCATCTT---TACTCCTACCAGAGTAATTTTGCAAAATAGATATCTTGTCATTCTTCCGGTTGTTATCAGTAAATAAGTGAA----ATGAAAAGCTAGAT-TATATAATTTATCTAGAACAAGAAAGTAGAATTAAATCTATATTCATTAATGAGA-CTAACCAGTCAATTACACAGATGGGCATTTTACATTTTGAAGATCATATGGACCCATTGTC--AGAAATATTATTATTTATGTCTATATGGACATCACCTGTGCATATTTACATGGAAATCAATG-AGAGCTGat s mm3.chr11 108091138 355 - 122862689 AACTAAAGCATTTCGAGTCAATGAGATCATTAA---GCCATGTGCTAA----GCCTTGGTCAGAATAGAGCCATTTC-A------------ATTCTCT--TTGTCCCATTCT----ATTACCTCAAAACTATATTTCCAAAATAAGCATCATACCATTCTTTCTCTTTATATCAATAAATAAGTAAATAAGGTGAAAAATAAGCTACAAATCATTGTTAGAGATACAAACAGTAGACTATAATTATTACACACTGATGCAATCCAACCAGTTAATTACAGAGCTAACAACTATTCATTTTGAGGAT------AGCTTCATGCCTGTGGAAAACTACCATTTCTCTCTTTCGAATCATCTACTCT---------TACAGAAATCAACA-GAAGTTCAT s rn2.chr14 16149536 373 - 107821284 aACAAAAGCTTTTCAAGTCAATGAGATCATTAA---GCCATGTTATGATAGAGCTTTCATCATACTAGACCCATCTC-AGTTTTGTGAATAATTCTCT--TTGTTCCATTCTCATTATTTCCACAAAACTATTTTTCCATAATGAATAC---ACCATTCTTTCTCTTTATATCAATAAATAAGTAAATAAAGTGAAAAATAGGCTATAAATCATTGCTAGAGATGAAAACAGTAGACTATAATTATTACACAGTCATGAAATCTAACCAGATAATTACAGAGCTAACAACTGTTCATTTTGAGGAT------AACTTCCTGCCTATGAAAAACTACCATTTATCATTTTCACATAGTCCACTGT---------TATAGCAATCAACATTTAGTTCAT a score=71339.000000 s hg15.chrUn_random 310907 671 + 611077 TTTTTAAAATACTGAGATCATATAGATGACAGCACCTGAAAAATAGACAACACCAAGCTTGATGTTAAAAGGTGTGAGGGTA--TCAATATTGTTCTGGCTATTGGG--GAGAAAACCATTTGTAAAACCAGTAAGTTAAAGCTCTTGCTTTAAACTT--------------TGGCTTTAATTTAACAAATGTTCTATGGAGTGACAGTATGTATGTAACCATGCTATGCCCATTCACAGATGCAGTAGAGGGAAGAATTTCTCAAACACAACTGTTCTAAGACTCAAATTAAACCGTACTGGGTTTGAAAAGAGAAAGTCCAGGAATTACCAAATATTTTAGATATCAGATATGAGAGAATGCCAGGTATGCGATGATAATCAACAATGGTTGTTCACACAATACATCAAATCAGTATTTGAATTAGCTTTTGAATTACAAGGACAAATGGATCAAGTCTAGACTCTTTAGTAGATAAATCTTATTAGGCTGAGATGTGTTTTCCCCTGTTTTTCCACAAGGAGATTACAAATTTGCAAACCTCAGCTGCTCTCATTTTATGCTCTCACCAAGCCAAAAGCTG--AAGTTCATCAATCAGTGTGTCTAAGTGTTCACTGGTTATATAATATTTTGTAGTTTCAGCTATCTTTCCAACTTCTTAAATCATCACCTTCA-----TTTGATCTTGTTT s mm3.chr11 108091493 640 - 122862689 TTTGTGAAATACTGA-ATTATGCCTATGA-------------------AACAGCAGATTTCAGGCTAAAATGCATGGTGAGAAGTAAATAATATATATGCACATGGGACGAGAGAATATTTAGGAAAACTAATCTGTTAAAGCACTTGACTTAAAATTATTGATAGCCAAAACAATTTCTATCGAATAAGAATTCTCTGGAATAAGGATTTATGCTTATCAATGCTTGTCACCATCACAAATGCACTACGAGGAAAC--ATCTCCCATAAAAGTTCTCTTACCTT-----------------GG-CTTAAAATAG---GTTTTGT-----CTGAGTATTTTAGGTGTCAGATA--AAGAGGTGTCAGGTATGTCGTGAAAATCAGCAGTTGTCGTTAGCAAAGTACATCATAACAGTATCTGAATTCACTTTTGAATTATGAGGATAAATGGGTCAAATGTTGGCTCATTAATGGATTAATC---TTATGCTGAGAAGTCTTTTCCTATTTTTATCCACA---AGACTTAAGATTGATAAACATCTTCTGTTCTCACTTTATGGTCTTACTAAGCCCAAAGTTATTCAGTTCATCAGTCAGTGTCTTTAAGTGCTCACTAGTTACATAAAGTTTTGTAGTGTTAGCAATTCTTGTAGGTTTCTACATCATCACCAACAATATCCTTGGTTTTGTTT s rn2.chr14 16149909 630 - 107821284 TTAGTGAAAAGCTGA-ATTACGCCTATAA-------------------AACAGCAAATTACGTGCTAAAATACATGGGGAGAAGTAAATAATGTATATGCACATGGGAGGGGAGAATATTTAGGAAAACTAATGTGTTAAAGCACTTGACTTAAAAGTGTTAATACCCAAAATAAAGCCTGTTTAATAAGAATTCTCAGGAATAATGACTTA-GTTTCTCCATGCTTTTCACCATCACAAATGCACTAGCAGGAAACATATCTTCATTTAAAATTACCTTAAATT-----------------GGCCTTCAAATAG---ATCTAGG-----ATGAATATTTC-----------------AGATGTCAGGTATGTCATGATAATCAGCAGTTGCTGTTAGCAAAGTACATCGCAAGAGTATCTGAATTCACTTTTGAATTATGAGGATAAATGGATCAAGGTTTGGCTTATTAATGGATTAATCTTATTATGCTGAGAAGTCTTTTTCTCTTTGTATACACA---AGATTTAAGATCGATAAACTTCTGCTGCTCTCACTGTATGGTATTACTAAGCACAAAGTTATCTAGTTCATCAGTCAGTGTCTTTAAGTGCTCACTATTTACACATAGTTCTGTAGTGTAAGCAATTCTTGTAGGTTTCTACATCATCACCAACACCTTCCTTGTCTTTTTTT a score=441.000000 s hg15.chrUn_random 311631 29 + 611077 TTTGTTATTGTTCATT------TTAGTTTA-ATTTC s mm3.chr11 108092347 36 - 122862689 gttgtccttgtttttTTAACTGTTACTTTACATTTT a score=33809.000000 s hg15.chrUn_random 311660 453 + 611077 ATCAAAA---------------------GATCA-------CAAT---CTTTTAATTTCATTTTCATTTCAAAGATTAAATGAAACCCACATAGAAATGAGTGTAAGATTTGCATTTGCATTATTTTGGCATCAATTTGCTATCCTCCCTCATACACATAGAGATC-GTTTCCATGTA----CGTGATTTCAAACATCCAAGTGCAG-------------TATTAAGAGCAGTTGTAAATTATGGTTCTCATTTTCATGATACAA-TTACA--------gtataaacttcctcttgctgct-----------------------------gtaaccaattaccacaaatt------------tcat-atcttacaata-aagtgaccgttaa-------------------tcctacagttctgtagttcagaagccttaaatgaaactcacagggctaatatcaagttttgggtaggactgcagtctttc----tgagggctatgtggcagaatctattacttgattttttcagcatccacaggccacctttattctttggaacatgtcctcattct s mm3.chr11 108092383 552 - 122862689 ATGAAAATGGAAAGATAGACTCCtattaaattatttaaattaattaaatttGAATTTCACTTAGTTTTCAGATATGAAATTGA-------------TGGATTTTGATTTTGTATCTATGTT--TTTGCCTTTAATTTTCTTCACCTTTTCCTTTACATATAGATGTATATCTATGTAGACCTACATTATCAAAGATCTGAGGACAGAAGCAACTCATAATGTTAAAACCAGTCCTAGTTGCTGAAATTTGTCTGTATGGTAAAA-CTGTGTTCAGCATGCACAAATGTCCGCATGCGATTTCTAGTACCAAAGTTGATATGATATGGGGGTGACTAATTATGACAAATTAACATGTACACAtcataattctgcataa-aaattatcataaacagtagcataaagtgattttattttatttctagaggttaaaagcctaaaataggattcacgaacttaaaatccagtttttatcctagcggtagcctttccttatggtgcccaagtcagagaatcagcctcgttgatctttcagtgtcta------ACTTTATTGC--TAATGCATTTTCTAGGTTC s rn2.chr14 16150568 551 - 107821284 ATGAAAATGGAAAGATAGTCTCCTATTCAATTATTTAA--TAAT---ATTTGAATTTCACTTAGTTTTCAGAGATAAAATTGA----ATGTAAGGGTGCATTTTGATTTTGTATCTATGTT-CTTTGCCTTTAATTTTCTTCAACTCTTCCTTCACATGTAGACCTATACCTGTGCAGGCCCATATTTTCAAATATCTGAGGACAGAGGCAGCTGGTAATGCTAAAACCAGTCCTAGTGGCTGAAATTTATCTCCATGGTAAAGCCTGTGCTCAGCATATACAAAGGTCTACATGCTATTTCTAGCACCAAAGTTGGGGTGGT-----GGTGACAAATTATGATAAATGAACATGTACACATCATAATTCTAtataacaagttatcataaacagtgagataaactgattttattttatttctagagtttaaaagcatgaaacaggacttataaatgtaaaatccgattttcatccta-ccttatcctttcattctggagctcaagtcagagaatcaacct--ttgatcttttagtattta------gCCTTTTTGC--TAATTCATTTTCTAGCTTA a score=15252.000000 s hg15.chrUn_random 312427 364 + 611077 ttgtatcttaaaagtcagtgatgttgagtaatttctcatgccaccacctccaaggttgcctttcttctgccttctcctttcatttataatgaagtttgtgatttcattgatcccacccatttaagacaatctctctatcattttttccgcaaccttaatttcgcttgaaatctaatttcacactaccgtgcaacctaacatatttgtatgttagactctgggaattaggacatgaaaatttttgggaggctattctttgacctacaacaGACATAATCTATTTACCTGCAGATTAAAGCGTTCTT---TATTTTTCTG----TCCCCCTCTCttaatttttttaaaataatatGAATTGCAGTAAAGAGAA s mm3.chr11 108092991 261 - 122862689 TTGGATGTGGGCAGT---TTAGGTTGAGT-ATTTCTT--GTTTCCGTCTCC------------CTTCT-TATTTTCTTTTTATTTGTAAAAAAATTTATTCTCTCATTGAG-------------------------------------------------------------TAATTTGTTGTTGTCATAAAATTTCATTTATCTA-----TAGGTTCTGGGAAGT----------TATTTTCAAGTGACTATTTTTGCA--TGGTTCAGACACAGCATATAT-TCTGAAGATTAGAATGTTCGTTAGTATTTTTCTCAATCTCAGTCACTCATAGAGTCTTCAAAATGACAC------------AGACAA s rn2.chr14 16151174 257 - 107821284 ttTAATGTAGGCAAT--GTTAGACTGAGT-ATTTCTCAAGTTTCCATCTCT------------CTTCT-TATTTTCATTTTACTTATAAGCAAATTTATTATTTCCTTGAG-------------------------------------------------------------TAATTTGCTGGTGTCATAATAT----TTGATCTG-----GAGATTCTGGAAAG-------------TTTTCTAGTGACTATTTTTGAA--TGGTTCAGACACAGTCTACTT-TCTGAGGATTAAAATGTTCATTATTATTTTTCTTGATCTCAATCATTCATTCAGTCTTCAGAATGACAC------------AGACAa a score=3635.000000 s hg15.chrUn_random 312799 31 + 611077 AAGAAAACAAAGAAATAAAAAGAAGGAAGGA s mm3.chr11 108093260 31 - 122862689 AAAAGAAATAAGAAGCTAAATGTGAGGAGGA s rn2.chr14 16154146 31 - 107821284 aaaaaaaaTAGGCAGCTAGATGTGAGAAAGA a score=54.000000 s hg15.chrUn_random 372461 52 + 611077 GGGTGAATGTTTTCTGCAAGTCTCGGTCTTCCGCC---CGTGGGTGTGTGTGGTG s mm3.chr17 72841966 42 - 93529596 GGGTGAATGT------------TCAGACT-TTAACTCTAATGTGTGTGTGTGGGT s rn2.chr1 222082669 31 - 276301343 GGGTGAATGT------------GTGGTCTGTTAAC---AATGT---------GGA a score=1365.000000 s hg15.chrUn_random 372513 65 + 611077 GTAGCAGGTGAATAGGTTGCACTTTAAAGTCATATTCTCAAGATGCAGGTTTGATATGTCCAGAG s mm3.chr17 21695954 62 + 93529596 GTAACAGATTAGTA---TTAATTTTAGATTTGTATTTTCAATATATTGATGTGCAAGATCAAGAA a score=1362.000000 s hg15.chrUn_random 372578 22 + 611077 CATCTTATCTGAAAATACATTT s mm3.chr17 20087591 22 + 93529596 CATCATTCCTGACAGAGAAATT s rn2.chr1 52913499 22 + 276301343 CATTGTTCTTCAAAGAGAAAAT a score=25710.000000 s hg15.chrUn_random 372600 307 + 611077 CAGAGAAAGAGGAGGAAAAGAAACAAATCACTTTTTCTCAGGTGAGCATGTCTCAGATCAAGCGCAGTGTC-CACTCTGCCTTTTGGAATGCCTTGTGTTCAGAACTTGCAAAGTTTTACTTCTCTACTCGTGCTGTTGATCCCTAATGAGTTTGTTTCAACTATTTTTTGTGATTTTTATGATAGTCAAGGGGTTCTGAAAAAAATATTTGTTTTCTCTATGCCATAGCATTCTATACATTTCTCTTCATCTTGGATTCTTGTATATCATGCAGAATTCTTACCACAAATTTATGACCTACGATATA s mm3.chr13 45628436 274 - 116242670 CAGAGAAGGAAGAAGAAATG---------GCTGGTTCTAAGGTAAATGTGGCCTAAGACTAGGGCTTGGTCTTAATTTTCCTCCCAATGTATATTATATTTAAAATATGCAAATCTATACTTTTATAT-------------ACCTAGTAAA--TATTTTAAATACTT----CCCCTCTTCTTATAACCAAGGTTATCTCTGTAAAATATATCTTTCCTATAACC---AGAGTATTTTCCCATTCTTTCACCCTTG---TCTTCCAAGCCATTAATAATTTTTACCTTGAATTAATAAACTTTTGTATT s rn2.chr1 29549897 266 + 276301343 CAGAGAAGGGAGAAGAAATG---------GCTGGTTCTAAGGTAAATGCAGCCCAAGACAAGGGCTTGGTCTTAATTTGCCTCCCAAAGTATATTGTATTTAAAACATG----------CTTTTATAC-------------ACTTTGTAAA--TATTTTAAATGCTTTC--CCCCCCTTCTTATAGCCAAGGTTATCTCTGTAAAATATATCTTTCTTATATAC---AGAGTCTTTTCCCATTCTCTCACCCTTG---TCTTCCAAGCCATTAATAATTTTTACCTTGAATTAGTAAACTGTTGTATT a score=20513.000000 s hg15.chrUn_random 372907 326 + 611077 TAAAATGTTCCCATTGTAGCTGTTGAACATTAGAAGGTGTGGATACTCAAGATTTCTATTGGGGAAACACCGTTGTCTTTGGAGATTAGTGAAAAGTGAAACATGTTATATTGAGGTTTCATCTGTGTGCTCTATTAGTTCCATGCAGAACAGCGTTTAGAAAATGCTCATTTAAACAGGGTGGCATTTATT----------ATACAGAAAGTTCTGAAAAAACTGTTAGGAGATACTTGCTTTCCAGGGTGCTAAGGAAAGACTCCTTAAAATTACTAATAAAAATTGCAG-AACAGGGAAGTTATCTGCACCTTCAACTTTGCATAAAACTGATG s mm3.chr13 45628710 303 - 116242670 GAAAGTATTTTCATTGAGACAATTGTATATGGAATGTCCTTAATATACTACATTCCCTTTGGGGATATATGG--GCCTTTACATACTACTGAAGGAGTGCCAGTGTTATATTTATCATCCA-CTGT-TGCTCCATCATCTTGATACACACGAG---TCAATCAAAGCACATTGAAG-AGAAAGCTGTTCATTTCCCAGTCTAACTCATAAAGGTTTGGAA-------TAGAGGCTCTTTCCCTACCA---TACCAAGGAAAAATGGA-TCACACTATTA--ACAATTTTCAGAAACATGG-------------CTTCAGATTTGTAGAAGACCCATG s rn2.chr1 29550373 294 + 276301343 GAAAGTATGTTCACTGAGACAATTATATATTGGTAGTCACTGATAGACTACAGTCCCACTGGGAATATATGG--GCCTTTACATATTCCTGAGGGAGTGCCGATGTTATATTTATAATACA-TTGT-TGTTCCATCAGCTTGATGCACATGAG---TCAATCAAAGCACATTGAAG-AGAACGCTGTTCATTTCCCAAACTAACTCAGAAGAGTTTGAAA-------TAG--------TCTCTTCAA---TGCCAAGGAAAAATGAACTTGCACTATT---ACAGTTTTCAGAAACATGG-------------CTTCGGATCTACAAAAGA-CCATG a score=297.000000 s hg15.chrUn_random 373233 21 + 611077 TTTCTTTATGATTAAATTTAg s mm3.chr17 21697021 19 + 93529596 ATTC--TATGAGGAGATTCAA a score=14093.000000 s hg15.chrUn_random 373998 202 + 611077 TAGAAACATTGGTgagcttgctaaaaattcagaaattcagacttcctccgaaatctcctgaaacaaaatct-------cacaagat----ctttagttattgcacatactaagacttgagaggtaTCTTCCAATTCATCATGACTCTTCTATCTGAGAAATATACACAACTTATTCTATATGATGTAAATATAGCACTCAAAAATGGACATGT s mm3.chr13 51925121 202 - 116242670 TAGCATCATTATTGAACTCTGTACACATTCAGAAATGTAGACCTCTGCC-AGAGCGGATACATCAGAATCTACATTTTCATTGCATTTCACATGCATGACTGTGCATATTAAATGTTGCTAAGTACCTTCTCTCTCGTCCTAACTTTCTCCTGTGAGAAATGTAGGATG--TGGGGTGTATAAAATCAGCGT--------AAGACAAATGTGT s rn2.chr17 88375602 196 - 93540836 TAGCACCACTATCGAATGCTGGACAAATTCAGAAATCTAGACCTTTGCC-AGAGCTAATAGGTCAGAATCTG--TTTGCATTGCATTGTACATTCATGATTATTCA-GTTAAATGTTGATAAGTACCTTCTCTCTCAT---GACTTTCTCCTGTGAAAAATGTATGTAA--TATGGTGTATAAAATAAGCAT--------AAAACAAATGCAT a score=11212.000000 s hg15.chrUn_random 374510 261 + 611077 ATGTCCATGTTGATGCCCTTAAT--TTTATAATGTATCATCCAGAAAAGTATCAAATCTACAGTGGTATTGTGGATCTTATGCTATCCTCTTTTCTCAGA-----GTTAGAGAATACTTCA------GTGTTAAAAATTATCTTATTGAATAATTTTAGTCACTCTTGTAAGTGAGAACCACTTCTTTTTACTCTCTTTTTTAACTTGAGTCAAATAAAAATCTCTGCCTATGGCCAT-GTGGTAAGTGCTTGTGT-GTTCATGAGTGGTTTTGCT- s mm3.chr13 51925323 239 - 116242670 ATGTTCCCGTGAATGCATTCATTGCCTTTTTATCTTTCTT------AAAAGTCAAATA-GGAGTGGTAGTA-GGATCT--CTCCATTCTCTTTTCATGGAGACGGGTCAGGGATGAGGTCATGGACCATATCAGAAA-TATCTT----AGGGGTGCTACTCACCTGTGGCGG--------AAGTATTCTAGCTCTC-CTCTTACCCTGTAC------AAAGCTTGGAATTGTGTTCCT-GCAGTTTATGTTGTTAT-ATT-----ATGACTTTAAT- s rn2.chr17 88375798 239 - 93540836 ATGTTCTTGTGAGTGCATTCATTGCCTTTTAATCTCTTTT------AAACATCAA----GAAGAGATAGTA-GGATCT--CTTCATTCTCTTTCTATGAAGATAGGTCAAGGGTGAGCTCATGGACTCCATTAAAAG-TATATT----AGGAATGTTACTCACCTGTGGCAG--------AAGTATTCTAGCTATC-CTCTTATCCTGTGC------AAAACTTGGGATTGTGTTCATAGCTGTTTTTGTTGTTGTTATT-----ATGGTTTTAAAT a score=73367.000000 s hg15.chrUn_random 374771 742 + 611077 TGTTTGTTTGTTTTCCAGGGACTGTTGACATTCAGAGACATAGCTATAGAATTCTCTCTGGAGGAATGGCAATGCCTGGATTGTGCTCAGCGGAATTTATATAGACATGTGATGTTAGAGAACTACAGAAACTTGGTCTCCCTGGGTGAGGATAACTTCAATACATAATTCCTAATATATTGCT-----------TTTCTCTTTTCTAAGATGTTTTTGGTAATTTCTGCTTTGCATGAATGAATTTTAGATCTCCAATTTTAAGAAAATCTTGGGGATTCATTGC-TGTAGAACAAATTCTTCAAGATGTTTTA-TCTTGACCAGAACTTTTGCCTTTCCTGAGCTTA-TGTATCTTTTG-CTCTAGGTTAGTGGGAATTCCAAAAATGCCATGGCATAAAAGATCGTTGCCCACACATTAGAATTCAGTTGCTGCCACCAATTTTTGATTCAGTAGTACTGAGTAGTGAAATTAAGGACCTACAAATTTAAAATATT---TTCTGAATATTT-AGAAAGTTCTATTATGAATCAATATTAATT-------TTCTAGAATTTTCTATTATATCCTCTAAGCATAATACTAAT---------TTGGTAATTAAAGAATTCAGCATGATCTATGTTACTTTTTTTTCTTA-------------------ATAAAACAGGTATTGCTGTCTCTAAGCCAGACTTGATCACCTGTCT-GGAGCAAAATAAAGAGTCCCAGAATATAAAGAGAAATGAGATGGTAGCCAAACGCCCAGGTAGG----------------TGAGAGCAAATGAAGCAG s mm3.chr12 110437159 785 + 114462600 TGTTCGTTTCTCtttcaggagcagttgaccttccgcgacgtggccgttgacttctctccggatgagtgggaatgcctggaccctcctcagcagaggctgtatagggatgtgatggtagagaactacagaaacctggtctctgtgggtgaggacagCATCCCTGCAGAGCTCCCAACGCACTGCCACCATTTCATGCCTTTCCTTTCAAAAATGTCTGCCATAGCCTGTGCTTTTCATAA--GCAGTACAAACGTGAGCTTTAAAGAACAGTTGTGGGATCCTTGGCACACATAAAAGATGCTCCCGTTTCTTCTCATCTTTGTC----CTTTTCCTCTTTCTGGACTCACTATACATCCTGCCTTTAGCTTAGTGGTAATTGCAACAAATCTATGCCACATAACATTCTGATCTACATATTAAAGTCTACTTTCTCCCCCTCAGCTTTGATTTGACTGTAGTTAGAAGTGGAGGTCAGCATTTGGGAATTGAAAATCTTGTCTTATATGTCTTTTGAGAAATCATATT-TGTGCCAGTGTTGTTG-------TTCTGAATCTCT--------TCTGTTGAGCACAGTAATGAGACACGCACCTCAGTTGATACAGGTTCAAGCATAATATAGGTCTTGttctttttttttttttttttttttttttGGGATAACCAAGCCTTATAGTCTCTAAGTCACACCTGGTTACCTCTCTAGAAACACACAAAAGAGCCTTGGGACGTAAAGTGGCCAAAGACAGT------GTACCCAGGTGGGTGGGTAGGTAGATATGTAGGACCGAATGAAGCAG s rn2.chr6 137647901 715 + 146362310 TGTTCATTTTGATTTCAGGAACAGTTGACCTTCCGAgatgtggctgttgacttctctccggatgagtgggaatgcctggaccctcctcagcagaggctgtacagggacgtgatggtagagaactacagaaacctGGTCTCTGTGGGTGAGGACAGCATCCCTGCAGAGCTCCCAGCACACTGTCACCATTTCATGTCTTTCCTTTCAGAAATGTCTGCTGTACCCTGTGCTTTTGATAA--GCAATACAAACGTGTGCTTTAAAGAACAGTTGTGGGGTCCATAGCATCCGTAAAAGATGTTCCCATTTATCCTT-TCATTCTC----CTTTTCCTCTTTCTGGAGTCACTATACATCCTGCCTTTAGATTAGTGGTAATTGCAGCAATTGTATGGCACATAGCACTCTGATCTCCAG---------------CTTCTCCTCAACTTTGATGTGACTGTAGTT-----TGGAGCTCAACATTGGTGAATTGAAAATGTTATCTTCTGTATCCTT-GAGAAGTCACATT-TGCACCAATGTGGTTGGATTTTCTCCTGAATCTCT--------TCTGCTAAGCACATTACTAGGACACAGA--TCAATTGTTACAGGTACAACCATGGTATAGGTCATGGTCTCTTTATT-------------------GATAATCAAGGCTTGCAATCTCTAAGTTATACCTGGTTCCCTCTCTAGAAACACACAAAAGAGTGCTGAGACGTAAAGTGACCAAAGACAGT------GTTCCCAGGTGGG---------------------------------- a score=22761.000000 s hg15.chrUn_random 375513 341 + 611077 ATGAGACAGATGAGAGGTACACAAATAAAGGAGGCAGCCAGTCCTTAAAATGTGGTCTGGGGAGCTGTCCTTTGATGAAAAGAGTTTCTGAGAAGCTCAAGTCATTTTTTCCTTTTGCTCTCACATAGGGACACCTCCTG---CCTCATGCTG-TTAAAGTCTCTAAGGATTCCACTTCTGCTTCAATAATCTTTCTTCAGGTTCACAGTGTGAGCC-AAAGTTTTCTTTAAAGGTTATCAGGGACTGCGC--AAACTGACTGCTTTGCCATTGCTTTTGGGGACAC----ACTAATATCTGCATATTTTTGGAAAACT---------CTAAACCATTAAA---AATTTTTTTTTGCATCATGT s mm3.chr13 51926309 330 - 116242670 --AGGGTAGAATGGGAGATTAGAGATCCAACAGAAAGCCAGGCTTTCTCCC-------AAGATAACCTGCTCTGGTGGACGTCGTATGTCAAGATCTC----CTTTTATGCCCTTTACTGTCACAGAAGGACATCTGCCAGGTCTCTATGGTACTTTAAGTCTCTAAGCTTGGTTGGCCCCCTTCAGTGAGCTCTGCTTATGTTTGC--CATGAGTCGAGAGAGTTCTTCA---CTTTGCTGAGTCTACATTGTCGCTGACT-TTTTACTGTTGCCT------ACACTTCTGGAAATTCCCACACATTTCTAAAGATCTATAAGTGCAGTAA--CTTTAAA-------CTCTTCCGTGTCATGT s rn2.chr17 88376769 331 - 93540836 --AGGACAGAGCGGGATATTAGAGATATGATAGAAAGCCACGCTTTCTCCTGATCATGGAGATAACATGCTCTGGTGGAAGTCATATATAAGGATCTC----CTTTTATGTCCTTTGCTGTCACAGAAGGACATCTGCCAGATCTCTACGGTGCTCTAAGTCTCTAAGCTTAGTTTGTCCCCTCCAGTGAGCCCTGCTTGTGTTTAC--CTTGAGTCGAGAGAGTTCTACA---GTTTGCTGAGTCTACATTGTAACTGACT-TTTTACTGTTTTGT------ACAC----AGAAATTCCCATACATTTCTAAAGACCT---------GTAA--CCTTAAACATGAATCTCTTCCATGTCATGT a score=2231.000000 s hg15.chrUn_random 380181 41 + 611077 GGTATTTTGATCACTATGATTTTGTTACATTTATACATCTA s mm3.chr12 110441171 37 + 114462600 ggttttttgttgtct----ttttgttttgtttgtttgtttg s rn2.chr6 137652182 33 + 146362310 GGTTTGTTGCTGG--------TTGTTTTGTTTGTTTCTTTG a score=24141.000000 s hg15.chrUn_random 380222 237 + 611077 TGAAGGAATTATGGCCTGTGGTATTTTGATATGG---CATTTTGCTAATGT----ACCT-TGTGTAATTTTATATATTTCATGTGTAGAATACATTTATATGAGTCCAGAAAGTGGAGTAACTTGTGCTTTTTGTGTCTTTCAGTTACGCGTTCCCATTTCACCCAAGACCTTCAGCCAGAGCAGGGCATCAAAGATTCACTCCAAAAAGTAATACCAAGAACATATGGAAAATGTGGACATGAG s mm3.chr3 36024221 240 + 160674399 TGGAGCAATGAGGGCCACAGATTTTCCATTGTGG----TGTTTGCTGATGTGCTAACCTCAGCACAGTTTTAGATGTTAGGTTTGTAAGA-GTGTTCTTGAGAGTCTAGTGAGTGAAATAAGTGTCTGTCTTGATTTCTTCCAGCCATGTTTTCTCATCATAGCCAAGACTTTTCACCAGAGCAGAACATAAAGTATTCATTCCAGGAACTCATCTGTGGACCTCGTGGACAGTGTGGCTTTGAC s rn2.chr2 118658276 225 + 246339213 AGGAGCAGTCAAGGCCTCAGATTTTCCACTATGCACACTGTTGGCTGATGTGCTAATCT-------------------AGATTTGTAAGA-GCATTCTTCAGAGTCTAGTGAGTGGAATAAGTTTCTGTCTTGATTTCTTTCAGCTTTGTTTCCTCATCATAACCGAGACTTTTCACCAGAGCAGAACATAAACTATTCATTCCAGGAACTCATCCATGGACCTCGTGGAGATTGTGGCTTTGAC a score=611.000000 s hg15.chrUn_random 380459 116 + 611077 AAATTACAATTTAAAAAATGCCGTAAAAGTGTGGGTGAATGTGAGGTGCCCAAAGAGGTTATAGTGAAGTTAACCAATGTTTGTCAA--------------CTACCCAAAACAAAATATTTCAGACTCAT s mm3.chr17 72387266 121 - 93529596 AGATCAAGATATAAAGCATATTGTCCAAGATCACATGAATAT------CCAAGAGAAATCTTA-TGAATGTAACAAGTGT--GCCAAAAGGAGTCATAAATCCTCCTAAAGTATACCTTGTAAAACTAAT a score=3890.000000 s hg15.chrUn_random 380576 26 + 611077 AATATGTCAAAGTCTTTGGTAAATTT s mm3.chr4 134352594 26 + 152921959 AGTGTGGGAAAGCCTTCAGTCAGATT s rn2.chr5 19317716 26 - 191625135 AGTGTGGGAAAGCCTTCAGTCAGATC a score=4770.000000 s hg15.chrUn_random 380602 37 + 611077 TCAAATTCCAATAGAGATAAAACAAGATATACTGGAA s mm3.chr17 79478907 37 - 93529596 TCAAATGTCAATGAGCACCAGAAGACACACACAGGGG s rn2.chr1 228475053 37 - 276301343 TCAAATGTCAGTGAGCACCAGAGGACACACACAGGGG a score=143844.000000 s hg15.chrUn_random 380639 1122 + 611077 AGAAACATTTCAAATGTAACAAATATGGCAAATCATTTTGCATGCTTTCACACCTAAATCAACATCAGGTAATTCATACTAGGGAGAAGTCCTACAAATGCAAAGAATGTGGCAAATCCTTTAACTGCTCCTCAAACCATACTACA-CATAAAATAATTCATACTGGAGAGAAACCATATAGATGTGAGGAATGTGGCAAAGCCTTTAGCTGGTCCGCAAACCTTACTAGACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCCAAGCCTTTAGGCGCTCCTCAGCACTTACTAACCACAAGAGAATTCATACTGGAGGGAGACCCTACAAATGTGAAGAATGTGGCAAAGCCTT-TAGCGTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAAACCCTGCAGGTGTGAGGAATGTGGCAAAGCCTTTAGCTGGTCCTCAAACCTTAGTAGACATAAGAGAATTCATACTAGAGAGAAACCCTATGCCTGTGAAGAATGTGGCCAAGCCTTTAGCTTATCCTCGAACCTTACTAGACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCCAAGACTTTAGGCGCTCCTCAGCACTTACTATCCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAGTGTGGCAAAGTCTTTAGCTTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGCTTATCCTCAACCCTCACTGACCACAAGAGAATTCACACTGGAGAGAGACCCTACACATGTGAAGAATGTGGCAAAGCCTTTAATTGCTCCTCAACCCTTATGCAACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGACCAAGCTTTTAAGTGGCATTCAAGTCTTGCTAAACATAAGATAATTCACACTGGAGAGAAACCCTACAAATGTGAATAATGTGGCAA-------AGTCCACCCTCAGGCCTTATAATACATAAAATAATTTACACTGGAAAAAAACACTGCAAATGTAGAGAATGTGGCCAAGCCTT s mm3.chr7 18071534 1129 - 134401573 AGAAGCCATACATCTGCAACGAGTGTGGCAAGAGCTTTAGCCAGTGGTCCAAACTGCTGCGGCACCAGCGAATCCACACGGGGGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCGCACC-TGGTGCAGCACCAGCGCACACACACAGGCGAGAAGCCTTACAAGTGCCCCGACTGTGGCAAGTGCTTCAGCTGGAGCTCCAATCTAGTGCAGCACCAGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCACGGAGTGCGAGAAAGCCTTCACACAAAGCACCAACCTCATCAAGCACCAGCGCTCCCACACCGGGGAGAAGCCCTACAAGTGTGGCGAGTGCCGACGTGCTTTCTACCGCAG-CTCGGACCTCATCCAGCACCAGGCCACGCACACAGGTGAGAAGCCCTACAAGTGCCCGGAGTGCGGCAAGCGCTTTGGCCAGAATCATAACCTGCTCAAGCACCAGAAGATCCATGCAGGCGAGAAGCCCTATCGCTGCACCGAGTGCGGCAAGAGTTTCATCCAGAGCTCGGAGCTGACGCAGCACCAGCGCACACACACCGGGGAGAAGCCCTACGAGTGCCTGGAGTGTGGCAAGAGTTTCGGCCACAGCTCCACGCTCATCAAGCACCAGAGGACACATTTGCGCGAGGATCCCTTCAAGTGCCCCGTCTGTGGCAAGACCTTCACACTGAGTGCCACCCTGCTGCGCCATCAGCGCACGCACACGGGCGAGAGGCCCTACAAGTGCCCCGAGTGCGGGAAGAGCTTCAGTGTGAGCTCTAACCTCATCAACCACCAGCGTATCCACCGTGGGGAGAGGCCGTACATCTGCGCCGACTGCGGCAAAAGCTTTATCATGAGCTCCACTCTGATCCGCCACCAGCGCATCCACACCGGCGAGAAGCCCTATAAGTGCTCTGACTGTGGCAAGAGTTTCATTCGCAGCTCGCACCTCATCCAGCATCGCCGCACGCACACGGGCGAGAAGCCCTACAAGTGCCCGGAGTGTGGCAAGAGTTTCAGCCAGAGCTCCAACCTCATCACGCACGTCCGCACACACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTT s rn2.chr1 99257366 1129 - 276301343 AGAAGCCATACATCTGCAACGAGTGTGGCAAGAGCTTTAGCCAGTGGTCCAAACTGCTGCGGCACCAGCGAATCCACACGGGTGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCACACC-TGGTACAGCACCAGCGCACACACACGGGTGAGAAGCCCTACAAGTGCCCTGACTGTGGCAAGTGCTTCAGCTGGAGCTCTAATCTAGTACAGCACCAGCGCACACACACGGGTGAGAAGCCCTACAAGTGCACTGAGTGCGAGAAAGCCTTCACACAAAGCACCAACCTCATCAAGCACCAGCGGTCCCACACTGGCGAGAAGCCCTACAAGTGTGGCGAGTGCCGCCGTGCTTTCTACCGCAG-CTCGGACCTCATCCAGCACCAGGCCACGCACACGGGTGAAAAGCCCTACAAATGCCCGGAGTGTGGAAAGCGCTTTGGCCAGAATCACAACCTGCTCAAACACCAGAAGATCCACGCGGGAGAGAAGCCCTATCGCTGCACTGAGTGTGGCAAGAGCTTCATCCAGAGCTCAGAGCTGACGCAGCACCAGCGTACGCACACTGGGGAGAAGCCCTATGAGTGTCTGGAGTGTGGCAAGAGTTTTGGCCACAGCTCTACGCTCATCAAGCACCAGCGGACACACTTACGCGAGGACCCCTTCAAGTGCCCGGTCTGTGGCAAGACCTTCACACTGAGTGCCACACTGCTGCGTCATCAGCGCACGCACACAGGTGAGAGGCCCTATAAGTGCCCCGAGTGCGGCAAGAGCTTCAGTGTCAGCTCTAACCTCATCAACCACCAGCGCATCCACCGTGGGGAGAGGCCATACATCTGTGCTGACTGCGGCAAAAGCTTCATCATGAGCTCCACCCTGATCCGCCACCAACGTATCCACACCGGTGAGAAGCCCTATAAGTGCTCTGACTGTGGCAAGAGCTTCATCCGCAGCTCTCACCTCATCCAGCACCGCCGCACGCACACGGGTGAGAAGCCCTACAAGTGTCCAGAGTGCGGCAAGAGCTTCAGCCAGAGCTCCAACCTCATCACGCACGTCCGCACACACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTT a score=7904.000000 s hg15.chrUn_random 381761 83 + 611077 TAACCAGTTCCAAACCTTAATTGAACGTAAGAGAATTCATATTGGACAGAAATTTTATAAATGTGAAAAAATGTAACAAAGCC s mm3.chr17 79479821 82 - 93529596 TACACAGAAGTCAGACCTCATCCAGCACCAGAGGACACATACAAGAGAGAAGTAATATATTTTCGAAAAGA-ATGAGAAAGCC s rn2.chr1 228475799 82 - 276301343 TACATGGAAGTCAAGCCTCATCCAGCACCAGAGGACACACACAGTGGAGAAGTAATATCTTTTCAAAAAGA-ATGAGAAAGCC a score=4172.000000 s hg15.chrUn_random 381844 46 + 611077 TTTAACCAACCCTCAAACCTTAATAAACCTAAGAGAATTTATTTTA s mm3.chr17 79479819 46 - 93529596 TTTACACAGAAGTCAGACCTCATCCAGCACCAGAGGACACATACAA s rn2.chr1 228475797 46 - 276301343 TTTACATGGAAGTCAAGCCTCATCCAGCACCAGAGGACACACACAG a score=1105.000000 s hg15.chrUn_random 382157 13 + 611077 ACTTATATTACAG s mm3.chr17 79479269 13 - 93529596 ACACACAGGGGAG s rn2.chr1 228475415 13 - 276301343 ACACACAGAGGAG a score=3388.000000 s hg15.chrUn_random 382170 33 + 611077 AGACCCTAGAAACAAAAAAAAAGTGACAAAACC s mm3.chr5 22670271 33 - 149719773 AAGCCCTATCAGTGCAGAGAGTGCGGGAAAGCG s rn2.chr12 27736929 33 + 46874691 aagccgtatcagtgcagagagtgcgggaaggcc a score=61731.000000 s hg15.chrUn_random 382203 507 + 611077 --TTTAAGCACATCTCAGGCCTTACATAATATCTGATCATTCATTCTAGAGAGAAACTCTACAAAAGCAAAGAATGTGGTAAAGCTGTTAACTAGTCTTGAACCCTTATTATACATAAGAGAATTAATACTGAAGAGAAACCCTGCAA---TAAGCAATATGGTAATGTCTTTAAAAAGTCCTCAAACCTGAATAAATGTAAGATAATTGATATTGGAGAGAAACGCTGCAATTGTAGAAAAAAATGTGGCAAACCCTTTAACTGATTCTCCATGCTTACTCACTGAA--AAATTTTATACTGGAGAGAAATTCTGCTTACATAAA-ACTGTGACAGAGCATTTAAGCACACCT-CAAACTTTTCTAA-AAAAGAGAAATCATACTGGTGAGAGACTCTAGAAATGTGTTAAAGGTGGCAAGGACTTTAAATGGTAGTCACACATTATGGTAGGTAAGATAGTTTATACTGAAGAAGACTCCTACAAATATGAAGAATGTGGCAAAACTTTTAACAA s mm3.chr5 22670221 511 - 149719773 tCAGTAAGCA---CTCGTCTCTTACACAACACCAGGTCATCCACACCGGAGAAAAGCCCTATCAGTGCAGAGAGTGCGGGAAAGCGTTCAGGTATCAATCAACCCTTACCCGACACCACATTGTTCACACCGGCGCCAAACCCTACAAATGCCCAGAGTGCGACAAGGCCTTCAATAACAGTTCGACCCTCAGTCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGT---CAGGAGTGCGGCCGGGCCTTCTACTGCTCCTCCTTCTTGATCCAGCATATGAAGATCCACTTCGAGGAGATGCCCTACAGGTGCAGAGAGTGTGGCAAGCCCTTCAGGCTCTCCTCCCAGCTTATCCGACACCAGAGAATCCACACCGGGGAGGAGCCCTACATATGCAGAGAGTGTGGCAAGACCTTCAAGTATCAGTCAAACCTCACCCGCCACCAGATACTTCATACCGGCGCCAAGCCCTACAAATGCCCAGAGTGCGGCAAGGCCTTCAATAA s rn2.chr12 27736879 511 + 46874691 tcagcaagca---ttcgtctcttacccagcaccaggtcatccacactggagagaagccgtatcagtgcagagagtgcgggaaggccttcaagtatcagtcaacccttacccgacaccagattgttcacaccggcacgaagccctacaaatgtccggaatgcggcaaggccttCAATAACAGTTCCACCCTTAGTCGGCACCAGATaatccacacgggagagaagccctacaagtgt---caggagtgcggcagggccttttactgctcctccttcttgatccagcacatgaagattcattttgaagagatgccctacagatgtaaagagtgtggtaagcccttccggctttcctcccagcttatccgacaccagaggatccacactggagaggagccctacatctgcaaagagtgtggcaaaaccttcaagtatcagtcaaaccttacccgtcaccagatacttcatactggcgcgaagccctacaaatgtccggaatgcggcaaggccttcaataa a score=16851.000000 s hg15.chrUn_random 382710 119 + 611077 ATTCTCACACCTTATGGTACAGGAAAGCATTTATACTAGAGAAAAATTGTACAAATACAAAGAATGTGAAAAGCCATT--AATATCAGGTCACATCTTACTCAATATCAGAAAGTTTATAC s mm3.chr5 22670564 120 - 149719773 CTCCTCCCAGCTTATCCGACACCAGAGAATCCACACCGGGGAGGAGCCCTACATATGCAGAGAGTGTGGCAAGACCTTCAAGTATCA-GTCAAACCTCACCCGCCACCAGATACTTCATAC s rn2.chr12 27737222 120 + 46874691 ttcctcccagcttatccgacaccagaggatccacactggagaggagccctacatctgcaaagagtgtggcaaaaccttcaagtatca-gtcaaaccttacccgtcaccagatacttcatac a score=740.000000 s hg15.chrUn_random 382829 18 + 611077 TTAATAAAGGGATTATAg s mm3.chr17 21706598 18 + 93529596 TTAATGTAAGAAATGTAG a score=2009.000000 s hg15.chrUn_random 383136 288 + 611077 T---------TATA-AATGTGATTACTGTAAAAAGACCTTTTGGAAAATATAGGCCTTTAAAGTAAAGACCAGTTATTCTGAAGACAAACATACAAACTGAAAGAGGATTGCTGTACCTTTACTTCCATTACAGATTTTATTGTACAC-----ATTTCATATTAAAGGAAAAATTTGAAGATCTGAGAAGATGCTCAAACT-------TTGTTGAA-----CATTAGAGAGTTTATATTGGAGAGAATGTCTAAACATGTAATGAATGTGAAAAACAT-TTGTTCAAAACCTACAGCTTAGAAAACACCAGGTTGT s mm3.chr17 21706616 313 + 93529596 TAAGTTTTTCTATACACTGTAATGATTGTGGCAAATCCCTTTCCACTGCCTTAGGTGTTAAAACACTGA--GGTTTCACAGTAGAGAAACATCACAAATGTATTAAATGTGATGACCTTTTACCCAGAAAGTTAAACTTAAAACACATCACAGAATGCATACAGGAAAGAAATTTTGTAAATGTGA-AAAATGTTTTGCCTGGTGGACTTGTCTAAGAATCTATCAGAAACTTCATCTAGGAGAGAAAAACTACAAATATAGTAAATGTGTCAAATCTGTTTTTTAGAAACACTATTATAGAAGACATCAGGTAGT a score=7568.000000 s hg15.chrUn_random 385282 66 + 611077 TGGATAATTAAAGAGAAAC----------CTGGAAACCTCAGAGATTCTCAAAAAAATCTATATTCTGTGACTTGT s mm3.chr17 20993475 76 + 93529596 TGAATCATCAAAGCTAAACAGACATAGAACTGGAAACATCAGAGAACCTTGTAAATATAAAAATTGTGTAAACTGT s rn2.chr1 54134324 76 + 276301343 TGAATCATCGTATATAAACAGACCTGATTCTGTAAACACCAAGGAACCTTGTAGATGTAAAAATTGTGTAAACTGT a score=6344.000000 s hg15.chrUn_random 387524 51 + 611077 TCTTAAAAATTTAACAAAAATGAAAATGGATACATTTGTATTGCTATATAT s mm3.chrX 42773965 51 - 149996094 TCTTAAAACGTTGGTAAAAAAAAAATGGGAAACATTTATATGACTCTAAAT s rn2.chrX 99948048 49 + 133900917 TCTTAAAATGTTAGTAAAAATAA--TGAGAAACTTTTATATGACTCTAATT a score=6226.000000 s hg15.chrUn_random 387866 71 + 611077 TATTCACGTATTTATATTACTAATGTATTGGCTTCCTTTTTATCATACAAGTGATTATCTTGATTAGGCTA s mm3.chr17 20223258 71 + 93529596 TAATCATGTATTTGTACCAATATTAAATGACTTTCCTTTCTATAATTTTAATGTAGTTCTTTACTAGGATA s rn2.chr1 53236701 70 + 276301343 TGAT-GTGCTCTCATATCAATATTAAATGGTTGTCCTTTTCATAATTTTAATGTAATGCTTCACTAAGATA a score=6334.000000 s hg15.chrUn_random 388853 52 + 611077 TGACTTTCTAACTTTAGACTATTCTACTATTCTATACTACAATATTGAACTT s mm3.chr11 10294209 52 - 122862689 TGAGTGTTCAACTTTGGTACACTTTATGAATCCATATGACAATATTAAACTT s rn2.chr10 9846309 52 - 106208427 TGAGTGTTCAGCTCTGATACACTTTATGAATATGTATGAGTATATTAAAATT a score=6351.000000 s hg15.chrUn_random 389153 39 + 611077 TAAAAAAAACAGTAGGGAATATTTTTTGGGTGGCTGTCT s mm3.chr18 6258585 39 - 91041441 TGAAAAAAAAAATAGAAAATATTTTTGGGGCAATAGTCT s rn2.chr18 6100916 36 + 82509072 ---TGAAAAAAATAGAAAATATTTTTGGGGCAATAGTCT a score=39838.000000 s hg15.chrUn_random 394331 395 + 611077 AATTTACCTCTACGTGATGAGCCACATCTCTACT--CAGTGTGTGAAAAATAAAT---------TCTTTTTTTTTTTT----------------CTGCCACCCCAGACTTCTGGGAAAGGAGCCTGGAGCTGTGCCCAAGCATCCCAGCCTTTGCCCTCAATTGCAAA-CAGAGTGGAGTGTCT-CTTAGCTCAGGAGTTTGTGCTACTCAAGAGTTTGCACAAACACAAAGCTGAGAAATACTGCTTGCTGAAAGGGGTGTA--AAAGGAAAAGGACAAACTGGTT-----GTCCTCTGAAGTGGAG-ACACTT-------------------CTATTCTATGTTGGGCTA--------CGATCTTGGAGAATGCAGGCAGGGAACGAGTTTTGCCCAT---TTTCCAATGAGAGACCTCTTGTGGTAAGACAGGCTCT--------TCTCTCTCTacctggtgagtta s mm3.chr5 127323837 450 + 149719773 AAATGATCTCCTCTTGATGAACCTAGCTTCCACTCACAATGTACAAAAGATAAATAAATAACCATCTTCCCCCAACCCCTCCCCA---------CCACCACCTTGGCCCTCTGGGTAAGGCGTTTGGAGAGTGGCCAACCCATTCCAGCCTTTGGCCTCCATTGCAAACCGAAGCAGAATGTCT-CCCCATTCAGGCA---GGGCCTTTCAAGAGCTTGCATAAACAAAAGGTTGAGAAATAGCGC-TTTAGGAAAGGGTGTAAGAAAGGCAAAGGACACGGTGACTTGTAAGTCCTCTGAAGGGGAG-GAATTTCACAGAAGGGGAGGAGTTCCCACTGCACCTCTGGAAACAGAGGCAGGATCCTGGA-AATGGTGGCA-GGACCCAGTCTCACTAGA---CTTCTAGTAAGACTGTCATTGTGATAACAGAAGACGTAAGAACTGCCCTTCTCTACTTGGCTAATTA s rn2.chr12 19405954 440 - 46874691 AATTTATCCCTATTCGATGAACCTAGCCTGCACGTACATTGCACAAAAGATAAATAAATAAATatcctcccctgatcctcccccgatcctcccccTACCACCTCGGCCCTCAGGGGAAGGCATTTGGAGAGTGGCCAACCCATTCCAGCCTTTGGCCTCCATTGCAAACCAAAGCAGTGTGTCTCCCCCATTCAGGCA---GGGCCGTTCAAGGGCTTGCATAAACACAAGGTTGAGAAATAGCACTTTTAGGAAAGGGGGTAAGAAAGGCAAAGGACGTGGTGACTTGTCAGTCCTCTGAAGGGGGGAGAATTTCACTGAAGGGGAGGAGTTCCCACTG-AACTCTGGAAA-------------------------GGCA-GGATCTAGTCTCACTAGGCATCGTCCAGTGACAGAGTCATCATTATAACAGTGGACCTAAGAACTGCCCTCTTCTACTTGGCAAATCA a score=5555.000000 s hg15.chrUn_random 402078 30 + 611077 CCTTTTTCTGTTTTTTCTTGCTTTTTGGAT s mm3.chr7 127972268 30 - 134401573 CTTTTTTCTTTTGTTTCTTTCTTTTTGGAT s rn2.chr14 10957119 28 - 107821284 CTTTTTTCCTT--TTTCTTTCTTTTTGGAT a score=10009.000000 s hg15.chrUn_random 402318 96 + 611077 TAGTTCTTCTTTCCTTGCTTCCATTTTTCAC----------ATCTTGAATTTTTCTCTTCAAGGAAATGATATATTTCTTTTCAGTGCAAACCCAGTGTTTGCTCT s mm3.chr5 44817145 93 - 149719773 TAGCTTCTATTTCCTTCCTTCCTTGTTTTTC----------ACCTTTCCTTTTGTACTTCCAGG--ATCACATTTATCTACCT-GCCCAGCCCAAGTTTCTGTTCT s rn2.chr14 1979776 103 + 107821284 TAGCTTCTATTTCCTTCCTTTCTTGTTTTTTTTTTTTTTTAACTTTTCCTTTTGTACTTCCAGG--ATCACATAAATCTATGC-GCCCAGCCCAAGTTTCTGTTCT a score=5506.000000 s hg15.chrUn_random 402485 43 + 611077 GAGGAGCCCTGCCCTGCACCCTTGCAGCAGCCCTGAAGCAGAC s mm3.chr11 32359119 43 + 122862689 GAGGAGCCAGGCCCTGGATTCCTGGCCCAGCTCTGGAGCCGAC s rn2.chr10 92889575 37 - 106208427 GAGGAGCCAGGCCCTGGA------GCCAGGCTCTGGAGCTGAC a score=75948.000000 s hg15.chrUn_random 407402 540 + 611077 CCAGAGTTGACTGGAGCTTGGCTCAGAATTCCAAGGGGGCCC--ATAACTCCATGAGGCCCAGATTTCCTGGCTCAGGAAAATTGGGAGGCCTGGGATACTGTGGCTTAGACCCAAGCTGAAAGATGAACACAGATCTTT-ATGGCTTGAAGGTGTATGAAATTATGTCACTACATTAGAGCAGCACCT----CTACTCACCTATGGGAATCTGCAGTTGAGCTGTGACACATAGAAGCTGGCCATGTCCAGATTGGTGGTTCTGAAATGGGCAGCCATGTGCACATAATTGTACAATGTGAAGCTCACTTGTTGATACTCCATGGCCAGCATGCTGTGGAGGTAACGTTCCCAAAGGGCAGCTCGAGCCCACTGCTCCTGGGATTCCTGCGATTCTTAAGCTATGGGACACTCTTGGATTTCAGGAACCTCTGGCTTCA-ACTGCCCCAGCATCCATC-GGGGCAAAGCCAAGGCTGAGGCCATCAGGGCCCCAGGGTAACTGGAGCACG------GGCACAGGAACAGTCAGTGGAGTCTGCATTGTCTTGGC s mm3.chr7 14005857 517 + 134401573 CCAGAGTTTGTTGGAGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTA----------------TGTCCCAGGAATAGTCAGAGGCCTGGGCTACTGTGGC-AATGCCCA--CAGGAAAATG-GCAGACAGTTTT-ACAGCTTGAAAGAATAGGAAATTATGTCACTACATCGAAGCAAGGCCTCGGCCTGTACACCTATGGGAGTCTGCAGTTGG-----GAAACGTAGAAGTTGGCCACATCCAGGTCTGTGGCTCCAAACTGGGCGGTCACATGCACACCTTCGTGCAGCGTGAAACTCACAGGGTGCCCCACCATGGCTAGGAGGCTGCGGAGGTAGCGCTCTCGCAGAGTGGCTCGGGCCCGCTGTTCCTGTGACTCTGGGGGATCTTGA---ATATGACCTTCTCCG---------ACTTCTGGTCTCAGGATGGTCCTACGTCCATCAGAGGCAAAGCCTCTGCTGAAGCCATCGGGGCCCCGAGGGAGGCGCAGCACTGGCACCGGCACAGGAATGGTCAGTGGGCTCTGCATGGCTCTGGC s rn2.chr1 69943571 499 + 276301343 ccagagtttgttggcgcttgctTTCGAAGTCCAGGAAGGTGCTGAGAAC------------------------------------AGAGGCCTGGGCTACTGCGGC-AATGCCCA--CAAGAGAACGAGCAGACAGTCTTCACAGCTTGAAGGAATAGGAAATTATGTCACTACATCGAAGCAGGGCCTCCGCCTGCACGCCTATGGGAGTCTGCAGCTGG-----GAAACGTAGAAGTTAGCTACATCCAGGTCTGTGGCACCAAACTGGGCAGTCACGTGTACACCTTCGTGCAGTGTGAAACTCACAGGGTGGCCCACCATGGCTAGGAGGCTTCGGAGGTAGCGCTCCCGCAGAGCGGCTCGGGCCCGCTGTTCCTGTGACTCTGGCGGATCTTGA---ATACGACCTTCTCCG---------ACTTCTGGCCTCAGGATGGTCCTGCGTCCATCAGGGGCAAAGCCTCGGCTGAAGCCATCCGGGCCCCGAGGGAGGCGCAGCACCGGCACCGGCACAGGAATGATTGGTAGGCTCTGCATGGTCCAGGC a score=4592.000000 s hg15.chrUn_random 411612 125 + 611077 CCTGATTTACCTGGTTGTGTTGAAGCTGCTTTATTAGGATCCTTTCCTATGGGCCACCTTTAAATGTTGATGTAATCTGGCATATTGCCCTATGTCATCCTTTATTTACTAGAATTTCTTAATTT s mm3.chr9 25172489 113 + 124467299 CTTGAATTAACTGGTAGTTTTGATGC--CTTCATTAAAATCCATTCCCACTGGCTATGTTCAAATGTTGCCATAATCTTACATAGTAC----------CTTCTATATACTAGAATTTCTTTCTTT a score=24398.000000 s hg15.chrUn_random 421819 328 + 611077 AAGGATCTTATCTCTTTTGAAAGCTAATATAAAAAGAATTCCTCCTAGACATATAAATATTGTGACATCAGTTACTTAGGCTAAACATGCTTATTATTCTAAGTGAATTATTAACAATAAATACTTTAACTCTGTGCCATGTTAATTATCATAATATGATTTCTAATTTGTTTTAAGCTTAGGTTATATATACCTTGAGGCCATTTATATTTTGTTATACTTG--TAATAGTTA-CTATACACTAGACTATGTATATTGGACTAGACATGGAGAGTCAAAAAAGAGTATGTGATCAGAGTGGAAATCATGCCGTAG-CTTCCTTCGTGTCTA s mm3.chr9 25175833 262 + 124467299 AAGAATCTTAATTATTTTTTGAGATATTATAAACAGAACCCAGCCTGCATGTGTAAAT------------GTTATTTACTCAAAACATGCCTGTTATTGTAAATTCAGTGAT---AAAAAATACATTAACTAT----TACATTGATCATTA-----------------TGTTTT---------------ATACATTTTAACCTTTTATGTTT--------TTA--CAAAAATGAACTGTATGCTTGGTAGTATAT-----ACTGGACATAAAAAATT---GAAGACTATGTGATCCCAGTAGAAATCATGCTGTAA-CTCTGTTCTTCTTTG s rn2.chr8 24008843 262 + 127756414 AAGGATCTTAATTCTGTTTTGAGATATTATGAACAGAACCCAGCCTGCAAGTGTAAAT-------------TTATTTATTCAAATCATGCC---TATTATATATTAAGTGGT-----AAAATGCATTAACTAT----TGCATTAATCATTA-----------------TGTTTTATA------------ATACATTTTAACCTTGTATGTTT--------TTGACAAAAAATGAGCCGTATGCTTGGTAGTATAT-----ATTAGACATACAAAATT---GAAGAATATGTGATTGCAGTAGAAATCATGCTATAGCCCCTTTTCCTCTTTG a score=79039.000000 s hg15.chrUn_random 422407 784 + 611077 ATACA--TAATCCAACTTGGA----TTTTTTTTTAAATCACTGAATTTTT------------------TCCTTGGGA-----------------ATACATTACTGTTAAAAATGTAAATTA----TTAGATACATTACTTT------TAATGAATATAAGTGGTATAATTAGAA-------GGCTGAAAAGAATCCTTGG-------AAACATGAGTCTAA--TTTGATAGCTAAGAAA-----CTGAGGACAAGAT--ACTCTTTGTAGCATATTTTCTAATGTTATTTCATTGTCTCACCAAGAAGTACTTGCATAAAGCAAGTTGGATTATAGCATCTGTTGAATATTTAAGGTTGGGTAAAATGGGT-GAGTTTAACAGATATTTTCCCTTATTTCTTTTAGGGGAATCTGGATTGGGAAAGTTGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTACCCAGGTCCTTCTCATAGAACTAAAAAGACTGTACAGGTATGGATATTAGTATTGTTAATTGATGATAAGCTGGAATAATATTAATACAT-ACAAAGCACATGTTGTAACTTTTATTATGCTTCCTTAGAGGTAAGATGCAAATTTGCCCTTAGCCAGTGTAAGGTGGTAAATATGACTTCATAAAATTAAAA--AAAAGAAGAAGTACAGTTAATCAGAAGAATTATCTTGACTAGAACTTTCCA--AATTTGTCCTAAGACTCTCCTAGAGATGAAACTGTGACATAGTAACCAATTCTCCTGGAGTtgtactatctagtatgatagtcatttgccaaatgtttacatcagttaaatgaattaaattaaaaatgcaatttctcttt s mm3.chr9 25176901 761 + 124467299 ATGTGTGAAACTGAGGACAGAAGTATTTTTTTCTGAGCC-CTGATCTTTTCTGAA----------GGACCATTGGAG-------------------------------GGGAGGGAGGCTATGGTTGGGATATGTTATCTAAGAGGAGAATAAATAAAAGGAAAAAATTAAAAACTATTATTTCTAATATGGAGTCTTAATGTTTTTGATCATGAACCTAACCTTTGATGGCTGGACCATCTCTTTAGTCCCAATATGAAATCTTTGTAGTGTATTTTTGAATGTCACTAACTAGT--------GAAGTACTAGCAT---TTTAGTC--ATTTTA--------------------------TAAAGCAGTTTAAGTTTGACAGAT-TTTTCTTCTATTTATTTTAGGTGAATCTGGACTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTATCCAGGACCTTCTCATAGAATCAAAAAGACTGTACAGGTATATATGTTATTGTTGTTAACTAAT-ATAAACTAGAGTTATGTTGACATAGAACAAAGTA-GTGGTAGAACTTTTATTTGGTGTC--TAGAAGT-AGATTCATATTTGACCTTA---AGTGGAAAGTAGTAAACATGACTTAACTAAATTAAAATCAAAAACATATATATAGCTGATTAGAGGAATTATTTTGA-------CTGCCAT-AATTATCCCAGCAACCCTCCTAGAAATTGCATTGTGATCTAGTTATAA----CCCTGGAGTTGTGTTGTCCATTTTGATATTCACTTTGCACATATGACTAAGCTTTAACC-AGTAAAATTTAGAATGCAATTTCTTTTT s rn2.chr8 24010017 763 + 127756414 ATGTG--AAATTGAGGATAAA----tatttttctgagcc-ctggtcttttctgaaaagaaatggagaaccagtggcgacaggggaaactcagggagacaggaatggtgggaagggaggctgtggttgggatatatta----agaaaagaataaataaaaagaaaaaaaTTAAAATTTTT-TTTCTAATATGGAGTCTTGATGTTTTAGATCGTGAACCTAGCCTTTGATGGCTGAACCATCTTTTTGGTCCCAATATAGAGTCTTCATAGTTTATTTTTGAGTGTCACTAGCTAGT--------GAAGTCCTAGTGT---GATAGTC--ATTGTA--------------------------TAAAACAGCT-AAATTTGACAGAT-TTTCCTTCTATTTCTTTTAGGTGAATCTGGACTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTATCCAGGACCTTCTCATAGAATCAAAAAGACTGTTCAGGTATATATG---TTTCTGTTAACTAGTAATAAACTAGAGTTATGTTGATAGAGAACAAATTA--TGGTAGAACTTTGATTTGGTCTC--TAGAAGT-AGATTCATCTTTGACCTTA---ACTGGAAAGTAATAAGCATGACTTCACTAAATTAAAACCAAAACCACATATATAGCTGATCAGAGGAATTATCTTGACTAGAACCTGCCATAAATTACCCCTGCAACCCTGCTAGAAATTGCATTGTGATCTAGTAATAA----CCCTAGAGTtgtgttgtccattatcatactcactttgcacatatgactaagcttt--------------------------------- a score=24126.000000 s hg15.chrUn_random 423370 226 + 611077 TAATACCATATCATAGTTGAATGGCAATAGCAATTCTGTAAGACTCCCAAGGTATATGTGATCTAATTTACtgcttctcagtctttgctatgcattccaatcctgggcatcctgttaa---atttagttcttctagtagt-----tctgagat-gggctgtgtttctacatttctaacaagatcccaggtggtgctgatgttgctggatggtagatcacactttACAGAGCAAAG s mm3.chr9 25178938 209 + 124467299 TAATACCATATGTTAGCTAAATGGCACTAGTAATTATGTAGGACGACTAAGCTATCGATGGTCCAATTTATGACCCCTCAGTCTTAAC-AAGCATACAGA---TGAG----CTATTAATTCATATagttc--ctagttatgtatatttgtggtaggactggatttctgcatttctagcaggataccaagtggtgGAGCAAGGTCTAGACTCTAGACTGg---------------- s rn2.chr8 24011023 209 + 127756414 tAATACCACATATTAGCTAAATGTCACTAGTAGTTATGTAAGACAACCAAGCTATGTATGGTCCAATTTATGACCCCTTAGTCTTAGT-AAGTATACAGA---TGAG----CTATTAATTCATATGCTTC--CTAATTGTGAATATTTGTGGTAGGACTGGATTTCTGCATTTTTGACAGGATCACAAGTGGTATAGCAAGGCCTAGACTCTAGACcag---------------- a score=44726.000000 s hg15.chrUn_random 423596 714 + 611077 GGCTAGACTCTAGATATGCACTTTTTATTAAATagtacagcagcctgtagccatatat----ggctatt-aatctttgaaatgtgggtagtctgaattgtgatgttctgcaaatataaaatataccaccgatttctaagactgagcatggaaaaaatctccataatttttttatattgattgtatactgcagtgatcatattttggatgtatcaggttaaataaaattgattaatttcaccttt-ttc---ctattttaaaagtggctactaagaaaattttaaattacttgtatgattgacatggtatttttatttggcagcactgCTCTAAACTGTTGATGAAAAATACTGTTGGTGGCCTCTGCTTGTGTAATATATAGGACATGAGCAGAGAGGAGGCA-AGTGAACAGTTCTGGCTGGAGTAGGCTTCATGGAGGCAGTGATGCTTTTAGCTGGATTTGAAGAAGTGGAAGTGATCATCCCAGTGCACAGGATGGAAGGACTGTCTGTATATTCTGGGCAG-TAACTCATACATATCAAACTGCAAGATGGAGTTTAGTAACTAGAATCTCAAAGGAGTAATTTTGCGAAGTGAATATCTTATTTCTCCTTTTTAATGTTCCTCTCTATTATAGGATTTTTTTGGTAACCTTCATAGGACTTGAGAT------TTAAAATT-ACCTGCAAAATTATGC-TGTAAAATCTTGATCCTAC----CTGCTTATTT s mm3.chr9 25179338 554 + 124467299 CTCTAGACTCTAGGTctgtacttt-------gcaacacaataacctgtagcttcatgtcgtttgttcctgagcttttgcaataaatgtcgtccaaattgagatattctgcaggtgtaaaatgtactgcagattttgaatagttagcatggaga-----------------------------------------------------------------gaaagaaagtaaCTGCTCTCATTTTC-TGTCAACTATATTTAAAGTAGCTAATGA-AAAAATTTAAAGTACTAACGTAGATCACTGTATATTTTTGTTAGGTAGCACTGGTTCGAGTTTTGGCTAAAAGCT--TATTGGTAG-----GCTGATGAAGTAAATAACACA-GCACATTGTGGAGGCG-TGTGG--------------------------------------GCTTAGAGCTAGATTTGA--AAGTACCAATGGCCATGTCAGTGTATAAGATGGA----------------------CAG-AGACATGTACAC-----ACTGCCAGATGCAGTGTAGTCATTTGATT----AAGGAGTGGTTTTGTGAAGGAAATACTTTATTTTTCATTT---------------------AGCTTCGTTTGGT---TTAGAGAGGAAAGAAAATGTAACCTTAAAATT-ACCTACAGAAAGATGTTTGTAAGAATGTGAACCTAC---ATGGCATATTT s rn2.chr8 24011422 545 + 127756414 CACTGGACACTAGAGctgtacttt-------gcaacacattaatctgtagctccatgt----tgttcttgagtttttgcaataaatgttgtccaaattaggatattgtgcaggtgtaaaatgtactgcagagtttggacagttagcatggaga-----------------------------------------------------------------aaaagaatgtaaCTGCTCTCATTTTTATGTCAACTATATTTACAGTAGCTAATGA-ACAGTTTTAAAGTACTAATGTAGGTCACTATACATTTTTGTTTGGTAGCACTGGTTCAACTTTTGGTTAAAAGCT--TATTGATGG-----GCTGATGAAGTGATTAACAC---CACATTGTTGAGGGGTTGTGG--------------------------------------GCTTAGAGCTGGA-TTGA--AAGTACTAATGACCATGTCAGTGTTTAAGATTGA----------------------CAGAAAACACATACTC-----ACTGCTAGA--CAGTTTACTCATCTGATT----AAGGAGT-GTTTTGTGATGAAAATAATTTATTTTTCATTT---------------------AGCTTTG---------TTAGAGAGGGAGGAAAATGAAACCTTAAAATGAACCCACTGGAAGATACTTGAAGGAATGTGAATCTACCTGGTGGCATATTT a score=12507.000000 s hg15.chrUn_random 424346 247 + 611077 TTTAGAAGTAACTGTTA-----------TGGCTA---TAAGAG--------------------------------------AACATGAATTTATCAAGGGACAGAGTCTGGGAGATGAGATTTTTGGAAAACCCAGACTTAGGACTAAAGGGAGTGAACTATCAGAGAATTGCATGGAAATGTCAG-TACGATATGAATCAGAGTAATTGAATATCACAT-----------------TTTATTCACAAAAGGGGAGATTCAAGAAGCTGGATTGTAAAGTA----ACAGTAAGGGTTTTCTGGATGTAAGGAATGATAAAA s mm3.chr9 25200271 220 + 124467299 TTTAGGAGGAACTGGGACCTGCCCAGCCTGACTAACGTAGAGG--------------------------------------AAAATGAATGTATTGGTAGACA----------------------GGAAAAATTAAGCTTAGTATTAAGACAAATAAGC--TTGGAAAACTTCTTGGGAATGTCAGATAGAAGATGAACTGGA-TAGTTAA--GTTACCT-----------------TGTGTTCATGA-------------------TGTGTGGTGAGGTACTTCACAATAAATGGGATTTGGATGTGAGGAAGGACAAAA s rn2.chr8 24031772 265 + 127756414 TCTAGGAG---CTGGGACCTGCCCAGCCTGACTAACGCAGAGGGAGTAGAGGCTTAGGTATAACTGTTGTAACTAGAAGAGAAAATGAGTGTGTTG-TAGACA----------------------GGAAAA-TCAAACTTAGTACTAAGACAAGTAAGC--TTTGAGAACT----GGGAATATCAGATAGGAGATTAACCAGA-TACTTAA--GTTACCTGCTAACTTAAGGTTAAGTACCTTCATGA-------------------TGTGAGGTAAGGTACTTCATAGGAAATGGGATTTGGATGTAAGGAAAGACAAA- a score=33812.000000 s hg15.chrUn_random 424901 569 + 611077 CAATACACCTTTATGTTTGTCTCCCAGAAGGGAGTTTTAGTAACGTGGTGAAGATGAATGATGGCAGATATAGGAAGTTTGAAATAGAATAGATGATGAGAAGAGGGAGGACTGACAATACAGAGTATTGCCACCCCATGTATATCCAAGAACACTGCATTGGTAAAGGATATCCATAGAGGAGCTAAGGGTACCTTCAGTGTCTTGAATTATTAA-TAATGATGACATCATCCCATATGTATTGTGGA-TTTATCTCATGTGTATTGAT-TTTATATATAATAGAAATGCTATAAACAAAAATTTGTTTAACCAAAATACCACATTCACCTAGACAATTTGAAGAAACAGAAATTTATTCTAAA-----ATTCCCTAGTTTAAAAACAACTTGATATGTGTTCTGAAATATATTATTATGTATTAATAA--------AAACTCACATATTACCTTAGTAATA-TTGCT----AAAAGGCAGTTTCTTTT------AGATTTTATGAGCTTCAGTAGTA-GCTAATCTACAGTTTCTT-GTCTAGTATTTAAATAGATAATATAAAGATGAACACTCTTTCATAGAAAGGTCATCCTT s mm3.chr9 25200491 426 + 124467299 CACTGCATCTTTATTTTTGTT---------GAA------------TGGTAAA-------GATGGTATATACTGGAAGTTAGAAGTATAGTGGGGAAAGGGAAAAGGGAGGA--------------TATTAC----------------------------TCAGT------------------------------CCTTAATATCTCTAATCATTAAATAATCATGTCATCATATCCTACAAATTATATACTTTATTCCTTGTACCTTGATATTCATATGCAATAGAAA------------------GGTTACCGAAAACAGCACACTCA-CTGGACAGCTTTGATAAATGG--AGCTATTCTAAATTAAGATTCCCTAGTTGGTAAACAATTTGATTT-----TTTAAGGGT----CCATGTATAAACTAACCTGGTGAAGCTCA-ATGTTACCATGGTAACAATTGCATCGAGGAAAGCAATTTCTGTT------ATA---TATGAGCTTCAGTAGCA-----ATCTACTTTTCTCT-TTAAACTATT--------------------------TCTTTGGTAGAAAGTTTATTCTT s rn2.chr8 24032037 430 + 127756414 TACTGTGT-----GTTCTGTT---------GAAGCTGTGATAAAATGGTAAA-------GATGGTGTATACTGCAAGTGTGAAGTGTGGTGGGAAAGAGAAAAAGGAGGGT--------------TATTAC----------------------------TCAGT------------------------------CTTTATCATCTCTAATCATTGA-TAATCATGCCATCATATCCTATAAGTTGTATACTTTATCTCTTGTACCTTGATTTTTATATACAATATAAA------------------GGTTACCCAAAACAGCACATTCA-CTGGACAGCTTGGATAAACAGGAAGTTATTATAAATTAAGATTCCCTAGTTAGTAAACAATCTGATCTATTATTTTAAGGGT----CCATGTGTAAACTA----------------------CCTTGGTAACAGTTGCTTCAAGGAAAGCAATTTCTGTTTCTGTTAGG---TACGACCTTCAATAGCATAGCAATCCACTTTTCCTTCTTTAACTATT--------------------------TCTTTGGTAGAAAGTTTATTCTT a score=4674.000000 s hg15.chrUn_random 427296 263 + 611077 GTGAGAAATCTTCCTGTGGCTGTGGAATTCTTGATAAGGTGGCGAACGTGTTGTGCAGCGGCATCCTGAGGGCTGCCCGCCCTCCCAGGCGCCCAG--GGCGGGCAGGCAAGCTGCACGCTGTCATCGCCTAAGTCAGCGGCATTGGGCACTCTTAATTACAGGGGAAGCAGAATCTGATTGCACTTTCTGTGCCAGCTCCTGACTTCGT-TTGCATCGTCCTTTTTTTTTTCTTTTTCATACCTCAATGTACTAAATCTGAAAGA s mm3.chr4 31964811 250 + 152921959 GTGAGGGGTCTTCCT-TCTTTGTGGCAACTTTGAAAAGTTGGTAGGCATTCAGGGCAGTT-TATTTTCAGCCTTCCCTGGCCTTTC-----TCCATCTGGCGGACTGGTGAGATACATGACATCACAGTCTAGTATGCAGCCGTCATGCACACTTACATTTTGGGGAACCAGAGTCTTGTTGCACTGTCTATGTCTGCTCTGGGGTTCATGTTGTCACATC---------TCCACTTTCATAACTCAGTAGATTAATTCCGAAGGA a score=7060.000000 s hg15.chrUn_random 427559 97 + 611077 TGTTTAGAGCTAGATTTTCACCAGCACGTATTCAGAAATGAATACGGGGATGAGGAATATC-------------ATTCATTTATCCTTGcattggctgagcaaatattta s mm3.chr4 31965061 103 + 152921959 AGTT------CAGGTTTT-ACCAGTAAGTCTCCAAATGTGGGTTCAAGTATAGGAATTTTCCTATCCTTGGCTAATGAAGTCACCCTTTCATTAGCCAAATAAACACTGT s rn2.chr5 137510992 87 - 191625135 AGTT------AAGGTTTTTACCAATAAGTGTCCAAATGTGGGTTCAAGGACAAAAATGTTC-----------------AATCACTCTTACATTAGCCAAATAAACACTAT a score=18723.000000 s hg15.chrUn_random 427656 208 + 611077 ttgagtgcctgttgtatc-caggtgctgtgcttggtgatagggGGATTCTCAGAT------TTGTTTTCTAAGGTGAAATAATTGGAATTTGGAGCCACTG-------------ATATTTTCCATGATCATCACAAGGGAGAGGGGAGCTATAATATTTGGATATCATAATGTGGTAAACTGGAAGTA-----ATCAGCCCAGAAGACACTGCCTGGTTCCTGGAAGGTGAAG s mm3.chr4 31965164 211 + 152921959 AAGAGCATTTGCTCAACAGCAGGCACTGCACTGGGCTATAGAGGGATTTTTTTTTTT----TTGTCCC-------ATTACCATTGAGAGTTCAAGCCACTGACCTACAAAAGCCATCATCTGCCTGCTTTCC-----------AGAAGCTGTAATATTTGGATATCTGAGTAGGGTCTCTAGGAGATGGTTCCATAAGCCCAGAGAAAGCTGCCTGGCTTCTAGGGACTGAAG s rn2.chr5 137511250 222 - 191625135 aaAAACACTTGTTGTGCCCCAGGCACTGCTCTGAGGTACAGCAGGATTCTTGTTTTTCCATTTGTCTTTCAAGAAGTAACCATTGAGAGTTCAAACCACTGCCCTACAAAAGCCATCATCTGCCTGCTTCCA-----------GGATGCTGTAGTATTTGGATATCTCAGTGGGGTCTTTGGGAGGTGGTTTCATTGGCCCAGAGGAAGCTGCCTGGCTCCTAGGGTCTGAAG a score=64206.000000 s hg15.chrUn_random 429094 517 + 611077 ATGGGTCTTAAAATCTC-TATGGAATCTAAATTTGGTGTCAAGTTAGCTTATTTTTTATTGGTCTACTTTGAGTGTAAATGAAAACAGATGAATGCTACCTTCCTTAACAATAGTCTTTTGTTAATTTTAAATCTGAAATTTTTGTTTTGGTAAAATTTTGAATTTATATTAAAGCTTTTTTAGCTTTATGCCCCCTAGCTATTAACAGAAGCAAACTCTTGCTGTTTATTTATGACAGAACACACATGCAGGACTTGAAAGATGTTACTAACAATGTCCACTACGAGAACTATGGAAGCAGAAAATTGGCAGCTGTGACTTACAATGGAGTTGATAACAACAAGAATAAAGGGCAGCTGACTAAGTAAGTATATATTTTTTCTCCAAAAAAGGTATTCTTTCTGTAGTCAATAATCATATTGTTTCATTTTCATTAAATTTCTCCTGGCTCCTCAGTAGAAAATTTGGATAATG-TTCTCTATGCACAACAGCATAAATGTA----TATTGTTATGCTTTGT s mm3.chr9 25200927 432 + 124467299 ATGGCCCTTGAAAGCTCATCTGGAATCTAAATT----------TCTGTTTGTTTTT-----ATCTGC---------CAATAAAGACATGTGAATGCCATTTTTCTTAAT---------------ATTTTAAATCTGAAATTTT-GTCTTGGTGAAATTTTTTG-TTGTGTCAAAGCCT------------------------TTAACATAAGCAAACTCTTGCTG----TTTATGACAGAACACATATGCAGGACTTGAAAGATGTTACCAATAACGTACACTATGAGAACTACAGAAGCAGAAAGCTAGCAGCAGTGACTTACAATGGAGTGGATAACAACAAGAACAAAGGGCAGCTTACCAAGTACGTATATA-ACTTTCTCCAGGAAAAAAA--------AAAAACACTAAATATTTCATTTC-CTTTCTTGAAGTTCTTCTTA----CTTATTAGAATATTTGGACCACGATTCTCTAT----AAGAGGAGAAAATTG----TGCAGTTAAAATTTGT s rn2.chr8 24032477 426 + 127756414 ATGGCCCTTGAAAGCTCATCAGGAATTTAAATT----------TCTGTTTGGCTTT-----ATCTGCTTTGTCTGTCAATGAAGACATGTGAATGCCATCTTTCTTAAT---------------AGTTTAAATTTGAGATTTTTATCTTGGTGAAATTTTTAA-TTGTGTCAAAGCCT------------------------TTAACAAAAGCAAACTCTTGCTA----TTTATGACAGAACACACATGCAGGACTTGAAAGATGTTACCAATAACGTACACTATGAGAACTACAGAAGCAGAAAACTAGCAGCAGTGACCTACAATGGAGTAGATAACAACAAGAACAAAGGGCAACTTACCAAGTACGTATATA-TTTTTCTCCAGG----------------AAAACCCGAAATATTTTATTTC-CTTTCTTGAAATTTTTGTTA----CTCATTAGAATATTTGGGCAAAAATTCTCTAT----------------TTATAACTGCTGTTAAGATTTGT a score=19070.000000 s hg15.chrUn_random 436181 134 + 611077 TGGACTTCCTCTTCTGAGCG-----C--CCTGCTGACATGTCCTGATGATGACTGTTCCTG---CAGAGGTCTGCAGAACCCCCAGTTACCTGG-CCCTGAGATCATGGAGTGCTCCCTTGCCCAGG--CTCCCTTGCCCAGGGAGG s mm3.chr5 22459272 142 - 149719773 TGGGTAACTTCTTCCAAGGGAGGGCC--CCTGGTGTCCTGTCCTGATAGCAGCCGTTCCCG---CAGAGGTTTGTGGGACTCCCAGTTATCTGGCCCCTGAAATCATACAGTGCTCCATGGACGACGGCCATCCTGGCTATGGGAAG s rn2.chr12 27538240 147 + 46874691 TGGGTAATTTCTTCCAAGGGAGAGTCTCCCTGCTGTCCCGTCCTGAGAGCCGCTCTTCCTGATGCAGAGGTTTGTGGGACTCCCAGTTATCTGGCCCCCGAAATCATCCAGTGCTCCATGGACGAAGGCCATCCTGGCTATGGAAAG a score=110991.000000 s hg15.chrUn_random 436345 952 + 611077 CTGCCTTAACTTTCTCGGGTACCCTCTCCTCCCCTCCCAGGTCTCCCGATTCCTGTTGGTGCAACCCCAGAGCTGCTGCACAGCGGAAGAGGCCTTGGCACACCCCTTCTTCCTGCAGTACGTGGTGGAGGAAGTGCGGCACTTCAGCCCCCGGGGGAAGTTCAAGGTACGAAGCCT---CCTGACCCA-GACCCTACGG---CAGTTGCCGCCAGCTCCCCAAGTGCAAACCTCTAAG----CCGTCTCC--TCTCCCAGGGGTCCTTATACCCCGCGGGTTTCCAGAGTACCCACCCCTCCCCTCCCAGCCGCCCTGTGATGGCTTCAGAGATGGCAGGTGTCAGCCCACTGGCTCCG----------TCCCTGAGGATGCTGGCCAAGTGGGAAGTGGGGGACACTA-GGAGGGCCCCGCAGAAGCCATCGAAGGCTTCGTGGCAAAAAAGCCCAGAGAGTCCTGTGCTGGAGGGGCAGGGCCTGGCAGGGCGTGGGCTGCAGCCCAGCTTCTCTGCCTGGCCCTGCAGGTGATCGCTCTGACTGTGCTGGCTTCAGTGCTGATCTACTGCCAGTACCACCGGGTGAACCCAGTGACCCGGGAGATCGTCATCCGAGACCCACCCCTACACCCTCCAGCCTCTGTGCCGGCTCATCGACGCCTACGCTTTCCGAATCTATGGCCCCTGGGCGAGGAAGGGGCAGCAGCAGAACTGGGCAGCCCTTTTCAAGAACACACCCAAGGCCGTGCTCCTCTCCCTGGCC---GAGGAGGATTACTGAGGGGCTGGCCAGTCAGGGAGGGCTGGGGGCCAGGTTGGGAGGGGAAGCC-ACGGAA-----------ATACAAGTCAAAGGGGTAAGATGCA---TGCAGGCCTCTGCAGAAGGAGCGCTTGGCCCTGGCCAGGAACCCCTGGAGCTGAGGCCACGATCGCTTCT--GTGCACAAGGGAAGCGGGTTTTCCTACCACACAGCAATACCTAC s mm3.chr5 22460483 852 - 149719773 CTGCCATGATATTCTCAGGTCCCTTATGTT---CTCCCAGGTGTCTCGATTCTTGGTGGTGCAACCTCAGGACCGCTGCTCGGCGGAAGAGGCCTTGGCACACCCTTTCTTTCAGGAGTACGTAGTAGAAGAAGTACGGCACTTCAGCCCCCGAGGGAAGTTCAAGGTACTGAAATTTAACCTTCCCTAAGGCTCTTGGGGG-AGGCTGCTGTTGGCTCCTG---------------------CTGGCACCAGGCTCTCAGAG--CTTTAAGCTATGAGGGAATGCCTTGTACCCACTGTTCCAAT--------TCAATTTCTGGTTGCAGGG------GATGTCAGCTAACCGACCCTGTTA-CCTAAATCCCTACAGATGCTTGTAGCCTGGGAA-TAGGGGACATCATGAAGGGCACCCCCAAAGCCAGCTAAGGTTTCCCGACAAG---------------CTTTGCTGCGGG--------CTG--AGGGTTCTAAGTGCTGCC----------------CCCTGCAGGTGATCTGTCTAACTGTGCTGGCATCAGTAAAGATCTACTACCAGTACCGTCGGGTGAAGCCGGTAACCAGGGAGATCGTCATCCGAG----ACCCCTACGCCCTTCGGCCGCTGCGGAGGCTCATTGACGCCTATGCTTTCCGTATCTACGGCCACTGGGTGAAGAAAGGGCAACAGCAGAACAGAGCCGCCCTCTTCGAGAACACGCCCAAGGCTGTGCTCCTCTCCTTGGCTGAGGAGGAGGACTTCTGAAGGGC---------------AGCGGGGGCCCAGGG-------GAAAGCAGACAGAG-----------GGACTTGTGAGAAGAGGATGCCCCA---AGTAGCCTTCTGCA-AAGGAATAGGTGGCCCTACTCTGTGCTCTCAAAGGC-----------TTGCCTCTAGAAGCACA--------GGGTGTTCCCAGTAAACAGCAGTAATTAC s rn2.chr12 27539579 873 + 46874691 TTGTCCTGGTAGCCTCAGGTCCCTTCTGCT---CTCACAGGTATCTCGCTTCTTGGTGGTGCAACCCCAGGACCGCTGCTCGGCGGAAGAGGCCTTGGCGCATCCTTTCTTCCAGGAGTACGTGGTGGAAGAGGTGCGGCACTTCAGCCCTCGAGGGAAGTTCAAGGTACTGATATCGAACCTCCCCCA-GGCTCTTGGGGGGAAGCTCCTCTTGCCTCCTGAGGCA-----CTCTATACCTGCCCGCACCAGGCTCCCAGAG--CCTTAAACTATGGCACCTCTTCTTGTACCCACTGTTCCAAT--------TCATTTTCTGGCTGCAGAG------AATGTCAGCTAACTGACCCTGTTAGCCTAAATCTTTGTAGATGCTTATAGCCTGG-----------CATCATGAAAGGCAGCCCCAAAGCCATCTAAGGTTTCCCGACAAG---------------CTCCGCTGCGGG--------CCG--AGGGCGCTCAGTGCTGCC----------------TCCTGCAGGTCATCTGTCTAACTGTGCTGGCCTCGGTAAGGATCTACTACCAGTACCGTCGGGTGAAGCCGGTAACCAGGGAGATCGTCATCCGAG----ACCCCTACGCCCTACGGCCATTGCGCAGACTCATCGACGCCTATGCTTTCCGCATCTACGGCCACTGGGTGAAGAAAGGGCAACAGCAGAACAGAGCTGCCCTCTTCGAGAACACGCCCAAGGCAGTGCTCCTCTCCTTGGCTGAGGAGGAGGACTTCTGAGGGGT---------------GGC-GGGGCACAGGG-----GAGAAAGCAAACAGGGTACGCGCCCCCAGAACTGTGAGAAGAGGATGCCTCAAGGAGGAGGCTTCTGCA-AAGGAGC-TGTGACCCTACTCTGCACTCTCAAAGGC-----------TCGCCACTAGATGCGCA--------GGGCGTTCCCATTAAACAGCAGTAATAAT a score=1679.000000 s hg15.chrUn_random 437496 31 + 611077 AGGAGATTTTATTGACCCCATGACATCCAGT s mm3.chr5 22462199 28 - 149719773 aGGA---TTTATTGACCTCATAAGATCCAGT a score=2355.000000 s hg15.chrUn_random 437527 63 + 611077 GACAGTGTGGGAGCAGGCTACTCTCCAGGGACATGTTTCTGGAGGCATATGGAGAAGGGGGCc s mm3.chr5 22462227 39 - 149719773 ------------------TCTTCTTCAGGGACATGTCT------GCAGGATACACAGAAGGCC s rn2.chr12 27541042 38 + 46874691 ------------------TCTCCCTCAGGGACATGTTT------GCATGGAACACGGAAGGC- a score=7943.000000 s hg15.chrUn_random 437897 114 + 611077 ATGGAAG---------------GGGAAGCTTCTGATATTTCTCTTTCTGGAGTACTGTTTGCTTTGT--GATTCCCACAATGCACTGCTTCACCTAGTACATCATTCGGTTCTCCCAGACCTTTTAGGACT s mm3.chr5 22462266 129 - 149719773 CTACATGATTAGCTAACTCTCAGAGAAGGTTCTGGCATTTGTCTTCCTAGAGGGGCACTGACTTTGG--TTCTCCCACAATGCACATCTTCACTTCATAAATCATTTGCTTTACTGGGGCTTTTAAATAGT s rn2.chr12 27541080 92 + 46874691 ------------------------------------ATTTGTATTCCTAGAGGAACACTGG---TAGCATTCTCTCACAATGCACAGCTTCACCTTGTAAATCGTTTGCTCTACTGGAGCCTTTTAACAGT a score=2200.000000 s hg15.chrUn_random 438011 99 + 611077 GAACTGT--------GCTTTAGATAGTTACAT----GCCTGCCT-GTTACACAGTGGAAACTAGTTTTCTTCAGAGGGA---CAC-GAAATGACAGATGA---GGCCATGAAGAAAGCA s mm3.chr5 22462492 113 - 149719773 aGGCCAGCGAGGCTAGGTTCTGGCAGCAAGGC----TTTGGCAC-ACCTCACAAAGGAAGC-ATTTTCCTTCTGCAGAATTTCCCAGAAGTGAAAGCTGAACCAGCCAGGGAGAAAGCA s rn2.chr12 27541261 95 + 46874691 aggacatcgaggctaGGTTCCAGCAGCAAGGCAGGCTTTGGTGCCATCTCACAAAGGAAGC-ATTTTCCTTCTATAAAATTTCTC-----------------------GGGAGAAAGCA a score=145487.000000 s hg15.chrUn_random 440305 1254 + 611077 TTGGCCTCTACCCTTCTCTTTACTAGAGCAAA----GGAATATTTCCATTTCTAGTTACCTAGTTACCCACTAGGTCAGGGAAGACAGAAACTGCTTTTAATATTCTTTTGCTGCTTGAA-GAATTAACTCAATCATATGCCCTGACCAATTCACATGGAATTAAACTCTTGGGTCTAGCAAATGGTGTTTATTTCACTAG------GGGGAGGAGAAACCTTTATGAAGTAGGTCTACAGCGGAGCCAACCTTATCTGTTGCTATAATTTTGCCCC----------AGTTTTTAAAGGCCTCATTAAAGATATCAAGGCCATGATTCCACAGGGATTTATAAACTCATCAGGGACATGTCAGGGAATGAGATAATGAAGACAACACACTATTTGGTGAGTTATCGCCGGAGCCACACTGTATTTGGCTGTGAGCACTGTATATCGTGGCTTAATTAGAGACACCCATTAACCAGGAGCCAGACTGACATTTTTATCTTGCGCCCATACTTCTAAATTATTCCTCAAATGGAATATGTCGTAGCAGCCAAGATATCCAACCCTGACATTACACGCATGGACCCAACCAGCCAATAGGCCTGGAAGAAAATCAGACAGTAGCGTCCTGGACCATTCTCTTATTTATTTAACGTGTGTTCATTCATTCCCCAGAGTGTTGTTGGAATCAATTAAAGATAAA-AGACACAAAGCCATGCCA--TGCAGAATA----AATGagatagatagatagatagatgatagaaat--------agat---agatagatgctagatagatagatag-------atagatatgtatagatggagag--agagaaacagatggataggcatagagagataagtagaagacagatagatatatagatagatagatagatagatataggtggagagagaaac-agatgaatag-gaatagatagatggatagatagatgatagatagaggaatagatggatacatagatgatagataaatatagatacatatagatggagagagaaaaatggatagatatatggatagatggatagggagagatacatagatatagatcaa-tagatggatacatgatag-ataaatacat-atgtatagatggagag-------aaatgg-----atagatagatgg-atagggataaatag--aagtagatggatacagagatggatagacagat-atagacagatGTGAAAAatacatatata-tgtgtatgtgtagttataaa-----tatgtatatatgtagtaacaaatatgtgta-------tatgtatttatacaCgtgtgtgtgtgtgtgt s mm3.chr5 131216294 1234 + 149719773 CTAACATCTGCCCTACTTTTTATAGGGAAAAA--TAGAATTATTTTCATGTCT---------GTTGCCCATCGGATCACAGGAGACAG---CTACTTTTAATATGCCTTTGCTATTTAAACTCATCAACTCAATCATGTTCCTCAGCCTATTCACGCCAAATTAAACTCCCAGGTCTGTCACGTGGCATTTGCTTTCCCAGGAGGCAGAGGAGATGAAATATTTACAAAGTAGGTGTACAGTAAAGCCAATCTTATCTGCTGCTATAATTTTCCCCCC---------GGTTCTTAAAGGCCTCATTAAAGTGATCGAGGACACAATTCCAAGGGGATTTATAAACTCATCAGGGAGATGCCAGTGAATGAGATAATGGAGACAACAGCCTATTTGCTGAGTTATCGCTGAAGCCACTCAGTATTTAGCTGTAAGCACTGCTTACTGGGGCTTAATTAGAAACACTGGCTAGCCTAGAGTCAGGCAGACG-TGCCATCTCATGGTCCTACTTCTAAATGATTCCTC-AGTGAAATGTGTGTGAGTAGCCAAGAAATTCAGCCCTGACATGATCCAAAGG-----AAACGGATAACGCATATAAAAGATGATCAGACGACAGAGTCCGACGGCAG----TTATTCATCTAGCATGTGTTTATTCAT---------------------------ATAATAAACAGGCATTGTGTTAGGCCATCTGTGGAACAGGCTGATAAGAGATGTGGCTCTACACTTCCAGAAGATTCATTCTAAAAT---GGAAAAAAGCAACTTGgttgcttagtttctcagtatatttgcttccttggaaaattgaagcaataaa-ggttcatcactcagagggttgctgggagcaataagac------ataaataatacaAGACTTAC-TGtggacagataagcgagaaagatggtgggtggctatatgaataaatagatgttagataga-aaataggtaattgcataaatgacagatg---acagagaaatatagagatagaagacagggtttatagatatatagatat-----tataggtaattatacagatattatagaa-gatat-gataACAGTTTATAAATATAGATAATTTATAA-TAGAAAG--AGATATAATAGACACCAAAAATCGATGGTGTCTTGATAGATAAT-AAGTAAAAGG---CAGA---TGAGAAACAGATGATAGGC-TGTATGAAAGACAAACAG--GCTGTATATGCACAGATAGACAAGACTTCTATGTATATGTATGC-----TATATATATGTTAT-TATGTCTGTACACACATGCATATGTGTGCAT s rn2.chr12 22999925 1257 - 46874691 CTAGCATTTGCCCTAATTTTTGTAGGGAAAAAAATAGAATTATTTTCATGTCT---------CTTGCCCATCTGATCACAGGAGACAG---CTACTTTTAATATGCCTTTGCTATTTAAACTCAGCAGCTCAATCATGTTCCTCAGCCTATTCACGCCAAATTAAACTCCCAGGTCTGTCACATGACATTTGCTTTCCCAGAAGGCAGAGGAGATGAAATATTTACAAAGTAGGTGTACAGTAAAGCCAATCTTATCTGCTGCTATAATTCTCCCCCCCCACCCCCCAGTTCTTAAAGGCCTCATTAAAGTGATCGAGGACACAATTCCACAGGGATTTATAAACTCATCAGGGAGATGCCAGTGAACGAGATAATAGAGACAACAGCCTATTTGCTGAGTTATCGCTGAAACCACTCGGTATTTAGTTGTAAGCACTGCTTACTGGGGCTTAATTAGAAACACTGGCTAGCCTAGAGTCAGGCCGACG-TGCCATCGCATGGCCATGCTTTCAAAGGGTTCCTC-AGTGAAATGCGTGTGGGTAGCCAAGAAATTCAACCCTGACATTATCCAAAGA-----AAACAAATAATGCATGTAAAGGATGATCAGACGACAGCATCCAATGGCAG----TTATTCATCTAACATGTGTTTATTCAT---------------------------ATAATAAGCAGGCATTGTGTTAGGCCATCTGTGGAATAGACTGATAAGCGACGTGACTCTAGACTTCCAGAAGATTCATTCTAAAATGGGGGGAAAAAGCGACTCGgttgcttagtttctctgtatatttgcttccttggaaaattgaagcaataaa-ggttcatcactcagagggttgtcgcgagcaataaaAC------ATAAATAGCACAAAACTTAC---TGGACAGATAAGCGAGAAAGATGGTGGGTGGGTACATGAGTAAATACATGTTAGATAGA-AACCAGGTAATGGCATAAATCACAGATG---ATAGAGAAATACAGAGATAGAAGACAGAGTTTACAGATGCGTAGGTAT-----TGTAGGTAATTACACAGAAATTATGGAAGGAGAT-GATACAAGGTTG-ATACATAGATAATGTATAG-TAGAAAGATAGACAAAATAGGCATCATAAATCGATGGTATCTTGATAGATAATAAAGGAAAAGG---CAGA---TGAGAGACAGAGGATAGGC-TATGCGAAAGACAAGCAGATGCTGTCcatgtacagatacacaagacatgtgcatatatgtatgcacatatctatatacattatacatgtttgtatacacaagcatacatgtgcat a score=6180.000000 s hg15.chrUn_random 454750 157 + 611077 AAATCCAGGTAACTTTAAAGAATTCACCAGCCGGAATCTGTAGGTCCAGAGTA----TTTTATAAAAGATCAGGTCTCATTGTAGAGGGAGGTAGCAAGGTTAATATAATGAAGTACAATTTGCTGCTATACTAGACATGTAATCTAATAACAGTACAGTA s mm3.chr5 133961950 152 + 149719773 AAGTCTAAATAACTTGTAAGAATTCACTGATAGGAATCCACAGGTTCAGAATAAATGTTCTAGAAAAGAT-GGGTCTCATTGCAGAGGGAG-------GGTTAAGGTAAGGTAGCATAATTTGCTGCTAT-TTGGACAGGGCATGTGATTGCAGCACTGTA a score=5152.000000 s hg15.chrUn_random 456828 195 + 611077 GCTCTGAGTGTCACAAAGGGTGC---ACATTCACTACTTGTAGGTAATGCAGTCTCATGCAATCCAAGGGATTCACTTGAGCAAATGGACTGGGACAATCATGGGTTCAGCAAAGCGCTATGTTTC-------------------------TTGGTAAAGACAAGAAAATAACAAACTCCCCTATACCAGTAATAAACATCCACAAAATAAAATAAAAGATCT s mm3.chr5 133962295 210 + 149719773 GTTCCTATTGTCATAAAATGTTTGAGAAAGTCACTACCTATGGATCATACGGTTGC--------TAAGCAATTCATTTTAGTAAGTAGGT--GGTTAGAGATGAGGTCAGCAAAGCTTCATGGTTTGTTATTTTTGTTTGTTTGTTTGTTTTTGATAAAGACAAGAAAA---CAAATTCCCATATGCCAATTGTAAATATCTGGAAAATAAAATAAATGATAT a score=24759.000000 s hg15.chrUn_random 457023 196 + 611077 TTCTCATTTACAA-CAGGGATAAACATAT-AAGCATGTGGGAATTAAAATAATGTAGTATAAATTCCACCAATAGAAAAATCAGATTACAAAATGCTTGGAGCAAAGGAAAAGAATGAT-ACATTTCTTA-GTGCAGTTGCATTAAATATAAAGAAACATACATTTCTTTCCCAAGTTAATTTATAAAAGTTGGTAAAAT s mm3.chr5 133962730 194 + 149719773 CCCCCCCAAACAA-CA--AACAAACAAAC-AACCCTTGGGGAATTAAAACAATGAGGTATATGTTCTATTTACAG-AAAATCAAATTTCAAAATGCCAGAAG-AGAGAAAGCTAATGATGACAGTCTATATTTGGAGGTGCATTAAATATAAATAAGGATAAATATACTGCCTGAGCTAATTTATAAAACTTGATAAAGT s rn2.chr12 25682184 193 - 46874691 CCCCA--aaacaaaca--aacaaacaaaccaacCATGGGGGAATTAAAACAATGAGGTAGATGGTCTATCTACAG-AAAACCAA-TTTCAAAATGCCAGTAG-AGAGAAAGCTAATGATGACATTCTGTATTTGCAGGTGCATTAAATATAAATAAGGGTAAATTTACTGTCTGAGCTAATTTATAAAACTTGATAAAAT a score=16558.000000 s hg15.chrUn_random 457600 161 + 611077 TAAAA---ACAATAGTAAACTGGCTATACAAGATATTGAAATAGAAAACAAGGA--GACTTCATCAAAAGAGTGTGGCACTTATTAGAGTGAAAAACTAGACTGATAGAATGAAATTATAGACAGA---AATCCAGATGTATGTGTAA----TTATGCCCGATTTGTCAGATA s mm3.chr5 133963351 154 + 149719773 AAAAACTCACAACAG--AAGCAGTCAGACAGTACACAGACACAGAAATTAAAGACTGACGACA---------------GCTTATCAcaataaagatttaggcagatgaagtgaaattacaggcagaaaaaagtcag--ggatgtgtaattccttatgtctgacctgttccata s rn2.chr12 25682425 154 - 46874691 AAAAACACACAACGG--AAGCAGTCAGACAGTGCACAGACACAGAAATTAAAAACTGACGGCA---------------ACTTATCATGATAAAGATTTAGGCAGATGGAGTAAAATTACAGGCAGAAAGAAGCCAG--GGATGTGAaattccttatgtctgacttgcaccatg a score=192540.000000 s hg15.chrUn_random 517613 3333 + 611077 GCCCAGATTCAGATCTGACTTTCCTGCAGAGCCCTCCCTGGACTCAGGGGAGATGTGGGAGGTATGCAGGGGTGTCAGGGGCACTCTGGGGTGCAAAGTCTTTGGTCCCAAATGTCCAAAGGTCTTTTTGGAGTCAGCCAAGGAGCTGATATGCTGCAGAGGGCCAGGCTGGCCCCAGAGCAGCAGGCATTCTCATCTTCAAAGACTCTGCCAGGGTCTTGGAGGTTAATCTGGGGGGACTGCAGTGTTTTTGATGATGACGTTTTCTTGTCCCTGCAGCTTCCACACCAAATCTGTCTGAACCCCCAGACCAGG--------GACTAGGAAGTCAGCCTCGATGCCCGCCGAGGTTCC--CCTAC--CCCCATCCAACGTCCCACCAGGCACCAAGCCCTCCAGAACTACCTTTCCCGTCTGTCCGCTCCCCCAGGTCTACTGCCACTGCCTGGCAGGACTAACACCCCAGCCTACCTGGATCCTCAAGGACCTCTTGGTGGTCACCTTTCCCAGACTCACCCCCCGGTTCTCCCTCTCCCGCTGACGGAGAGCT-TACCAACAGGGCATGATCAGCTCCTTCCCTGCAAACAAAATCCCACAGGTTCACCATTGCCCCTGGACAAAGTTTTCTTCTGAACCAGAAAGTCAAGGCCCTTGTAGACTCCTGACCACATCCTCTGCCACAGGGGGGCCTGAGGCTGAGCCCCCGAGGTCCCTGAGGGCCACACCAGCTACTCCTTCCTGTTCCTCTGTTTTCACTGCCCCCAGGG------C----------------------------------------------------------CCTGTGCATCTAGCAATTTTCGCTTTAAACTTTATGAATCTctgaagtgacaccacctccaggaagccttcctagaggcaccaagcacagttgacatcctgcctt-tgtgcTGTAACTGGCAACAAGACAACCTCTGATTGAGGATGAACAGCTCCCCTGAGCCATGTGCTCTCTGACAGCAGGACGGTGTCCAATCCGTTTCCATGGCCCCAGGTGGGGATGGA-CTAAAGGCTTATTCTAAGAGGACCCAGCGAA--AGCTGGTGAAACAGAGATCAACCCAGAGCCTGGTTTAGCTCTGACAACCTCCACACAGGCCCA-GTGGCCTTGGCCAC----TGAACAGAGAAGGCC------------AGGCATGGTGACTGCTCTCTCTGGAGCC--------CACAGAGATTTGCAGCTCAGGAAGCCGCTCCGGCCTCTGGCCTGACAGATCTGGACCGAGGCTGCTGAGGGCTGGATGGAGCTCAGCTCCCAGGGTGTAGAGGGTGGACAAACTGGCAGGGCCTT-GGTGTCCCCTGGGCAAATTTCCTC-ACATCACAGGAGAGGAGGCACCAAGCTACACCGCAGGGGCATCCCTTGCTGGGCCCAGAACTTTCCTCTGCCTCCAGAGTAAATTCAGAGTCACCTGGGAAAGG-----GA-----CCCCACCTGCCACCTTAAAATCACCCCCTTTTCCTGTCTCTGCCTGCCCC---TCCCCATGAGCTTGAGCCCCTGAGAACTGAGGCTTAGGGTAGAACAGCGAC--CAACCCCATCACAAGCCTGATGGGCTCACCGGAGCG-GGGGCTGGGGGCCGGGAGGATGAGGATCTGGGGCAAGAGAAAGGGTGCAGGAAGGGAAAACGGGGAAGCAAAGACCCACGGGCCTGGGTTGGAGGGAGGCTGTCACAGAGAAGGAGGGACTCCCCCCAGCTCTGCCCAACCCTCCTGCACCCAGGCCTGCATCCAGTGGGAG----TGGCCTTTTTAGAGGTCCTTTCCTCCTCCTGTCACCCCTGCATGGCAGGTGGGGACACACCACC-CACCCATCTGGCAGGCCAGGCAC-AGGCCAGGTGAGGCTTACACACCCCAGGGTCCCAGAGCAGA-ACAGGAGACCCcatctaccctgtctc-tgcccctcagtttcagcgtctgtggaatggaactccggctgc--ccgtcttgcagagagtttgaaggatGATGCCGCCGCACTGCCTTGGGTGTTTGGAGGCCAGGACTCTCCCACACAGTAACCC--TGACCATGACGCCACGAATGCCCTGCCCCTGGCCCCCTGCTAATTGAATTTTTCCAGAGGCCTTGTAGTGTTCTTTGAGCACTGCCCACTAAGCCACAGGTGAGGAGCTGTGATGTTTCAGCCACACATTCCTGGCACCCCCTAGCCGGGGCATGAGCATGCTCCTTACGGCTCAGTCT--TGTCTGGGGCTCCATTAAACCAAGCTTACAATTAAGGAAATGTGATA----GGAAAATTAGCTGATGTGTGAAACCGGAGCCT----CGGTACAGTTACAAAAGACAGTGTCTTCCAAGCCCTGATTAGCCACTCAGCCTGACGTGAGGTTAAGT---AAAGAACGCCAGATTAATCCAGATGGACAATTATGACGCGTTCTTCTCCGGCGTCGAGCCTGTTGCTAAATTTCTCATGTGGCTCCCTGCCAGGAAGGTATTGTGTTCTGAG--------------ACTTTTCTACCATTTCTGCTTAAAAAGTTCCAAATGTTCAGCCATATGATGTGAAACTTAACTTCAAGAAAATCCTAGGGGGGGTGTTGATGGTGGGGAAGATGTGGGGGTCTGATCCGCTGACCCCACGCCAGGGGAGGATACAGTT-----TCAAGCCTTTCTTCTGGCCCCACTCCTCTCGCCTAGCCCTAAGGAGCCCTAAGCGAGCCGGGTCCTCCAGGAAGACGGGAGCGCCCCTGGTGAAGGCAGAA-------------TCCACCAAGGCCTCTGTCCTGCAAACCCCTTCCCAGTGTATGGGTTTTCAAGGGCCGTGCaacaaagtctggaagcccggggacctgggttccaagccccgcctctgtcaGCCTCGGTGTCCTGGGTTTCCACAGCTCAAATTAAATTCCATCAATAATCCTGc--aggttactcttctagaagcacagttacctcatttaaacctcacaaaaaccccaggtgggaaagctcttacctccaccttacagatgggtacactgaggcccagagggcttaatg----act---tgatgagacaagcgagtggtggaggccaaattccagcccatgtgatgtgaatcTCACGGTTTGATTGACCAGGTGTCTGCAAGTGTCAGCTTGGTGTGAGGG--------GCTGCCCCAGACCCCTCTAGCTGGGACG-GGTGACTTTCTGTAATGAGCGTGTTGGCTCCTTCATCTGAGTTCTATACAGGGGAGGAGAGAAGGGGAATGGCCTCAATGCCTTGGTCCTTGAG-GCTCTGCC-TCTCGTAGCCCCTCTAGGATGGTGCAGTCACCTCTGCA-----CCT----CAAGTCCCAGGCCCAGCACCAGGCATGGAGAA----GCTCAAGGCACAGCCGTCAAGCTGTCTAAAATTAATCACATGGGGCCATGGCAAGTGAGCTATAAATATGTGCATAGTGCA s mm3.chr5 116031658 2870 - 149719773 GCCCAGATGTGGGCTTG-TGCTGCAGCGGCGCACTCCCTAAGTGAATGGACAGTGCCAGAAGCGCGTAGGTGGCAGCAAGGCATTGTGGGGGGCAGGGTC-CTAGCTGAAAATGCCTGGAGG-CTTTTCAGGGCCA-CAATGGAGCTCACAAGC--CAAAGG--------GGCCCCA--------------CTGACCTGAAA-------------TTCATGTA-----------------TACAGCATGCTTGGGGCTGACACCT-----CTCTTGCAGTCCCTCCACTGGTTCCT-----TCCCCCTGGTTGGCTTACTAGAAGCATGGGAGCCATCATACTTGCCGGCCCAAGTCCCACCCCACCCCCCTACCTAGCTTACCCCAAAGCACTAAGAACCCCACTG-----------------CCCATCTCGTACATCTGTAGTTACTGCTGTTCCTGACTA--------------CTGGGACCGCAAAGACTTGTCCCTGATCACCTGT------------CCCCAGCCTTTAAACTC----TGGTAGAGAGCTGCACAAAAAGGGAATGACCAGATCTCTATCT------------------TTTCTTCATTCCTGCTTGCCCTAGACT--TTTATAACTGGGCCTTGGAGGCCCACACA-------------ATCCTCT------------------------CCATCCAAACCTCTG--------ACTAGCT-CTCC------TTCCACTGGGATCATGGACCACCGGAGCCACCC----------------------------------------------------------CCTGCGCATCTAGCAAGCTCCAGTTTATAACTCG-GAGTCTCTGTGGTGAAGCCTCCTTCAGGCAGTCTTCCCAGAAGCACCAA--ACAGTTGACCTCCTACTTTCTAGGCTGTAGT---------GATAGCCCCCACT---------ATAGTCTGCT--AGTCATG-----------------------------------ACACAGCCTTGGGTGGTCGTAGG-TGCAAGGCCTGCTC-AACAGAGCACAGAGAAGCAGATGATGAAATAAGGGTT-GTTTAGAGTCTGCCTGGCTCCTTACAAGCTCCATGGAGGCCAGCGCTGCCGCGGCCACATCGGGCTTGGGGAAGGACTGTCCAGCACAGGGAGAGGGCGAGCA-------TGGAGCCACTCGCATCGCAGAGCTTGGAGGTCTGAGTA----------CTTGCAGCCTAGCAGGTCTGGG-CAAGGCGACTGAGGGG--------------------------------TGGCTGAGCTGATAGGCTCTCAGGTGCCTTC--------CTACCTCCTCATCA---------GGGCATCTGACCACACTGCCAACG---------------ACCAGACTGTAC-CAGCCTCTGTGGTGAATTCA-AGTGACACAGAGAGGGCTTCTGAGCTTTCCCAATATGTGGCCTTAAAGCCCCCCTCTGCCTGGTTCTGTGCCCACCCC---CCTCACTG---------CCC---ACATCGAGGCT---------ACAGACACCCCACTCCTGCTCCCAGACTGTTGGACCAATGGGAGTGTGGGGAAAGTGGGTGGTAGG---AAGGTCTGTGGGGAGAGAAA----ACAGGGATGGCA------GAGACAAAAA-TCACTGTGCTGG---GGAGGGGTGTCATCCCCTGGAGGGTGTGAC-CTCCACAGTACCACCAGTCTCTCTTTGTCTAA----TAAACTTGG-GGAAGACCCTGGTCTCTTTGGGG--CCACCGCTGTTTCTGTTACCATGGCA-GCCAGGCAGAGTCATACAGGC-TGCTGATTTTGCAGGGGAGGTCCGGGGCTGGGGGACTCCCCCTAGTCCCAGAACCCAAGAACAGGGATGAAAGATGTCCTC-ATCCTGTCTTACCAATCCCACCTTC--CTCCCGTAGCAGGG--CTCTGAGTGCTGCCAGCTTCC------TATGCACAATCAATC------------------AGTTGGAGGTGGGGG-TCTCACAGACTCAAGCCTGGTGGTTATGAGGTCACAAAATCACTACC------------CTGATCAG----------------TACAAGGTGTTTTGAGCCTTGTCCTCAA--------------------------TTTGCC-CAGGTGCCTGGTGCCGTGTGGCAGGAACATTATAGTGTACCCCCACCCCCACCCCGGTCCCCTGTGGTTCATGAAAGTGAGATCTGGATTAAGGAAACA-GACAAACAGACAAGCCGCCCAGAGTGTGAAATCGGAGCCTGGAAGGGCATGGTTCTGA---GCTGTGCCTTCCG---CCTGCCTGA-------------CACCAGGCTAAGCGGAAGAGAAC-CTGGATTAATCCGGGTCCTCAATTATCTCAATTGCTTCTCAACTTCTCGGCTTGGCGC----TCTCTCCCTCGGCTCCCTGCCAGGAGGGTATTGTGTTCCAAGAGAAAATACTTTTCATTTTTCTACAATTTCCGTTTAAAAAGTTCCAAATGTTCAGCCATATGATGTGAAACCAAACTTCAAGAAACTCCT-GTGGGGTTTTTGCCGGTGGAGAAGACGT-GGGGCGTGACACACTGACCCTGAGGC-GGTGAGGATCCAGCGTCAAGTCAAGCCTTTCTCCT--CCATGCTCTTCCTAGCCACTCCCAAGGAGGCAGCACCAGGCCTCCTCCTCCAGGGTG--GGAAGCCTT---CAGTAAGGCAGAG-------------CCTCCTCGGGGATCCATCCTGT-----------------GTAGACTGTCCAGGGACATACAGGGAAG--GGAGAGCCAGGAGACAAAGGGTTT--GGTTCAATTCTGTGAGCTCTGTGGCCCTGGTATATATGAGACC--------------CAATAACCAGGCTGAGTCTGTTCTCTTAGCTGCATGACTAACTCAGCC-AACTTCCTAAGATTCCCAG--CAGAAAGTTCTT---TCCGATTGGCATATGGTTAAGCTAAGACTCAGAGAGTTGAACATGA-ACT---GCCCCAGCCA--CAGAAGGCAGGTGTATAGGTTGGATTTGTGTGCTAAG-ACAAATAACATTGATTAGCCA-------GTAGGTGACCCCTCAGTGTGAGGGGTCCTGG-TCTTCTACAGACCC----AGCTGAGAAACACTAACTTTCTACA--------GATAAATACTCCTTCTGAGC--------TGGCAGGAG-GGAGACAAAGGGTC----AGTCTGGGTCCTTCTGCCCACTGCC-TC----ATCCTCAGGAGGAGGGT-------CTCCTGCC-----CCTGCTGCAGCCTACAGGTCTCGC-CCTGGCATGGG--AGTGGGCTCAAAGCACAGCCACACACCTATCTTAAATTGTTCATGTGGGAA--TAGCTAGTGGTCTGTAAAGATGTTCAAAAGGAA s rn2.chr14 77802108 2816 + 107821284 GCCCAGATATGAGTTTG-TGCTGCAGTAGAACACTCCCTAAGTGGATGGACAGTGCCGGAAGCACGTAGGGGGCAGCAAGGCATTGTGGGTTGCGGGGTA-CTAGCTGAAGACAGTTGGAGG-CTCTTCAGGGCCA-CTGTGGAGCTCATGAGC--CAAAGG--------GGCCCCA--------------CTGATCTGGAA-------------GCCATGCA-----------------CACAGCATGCTTGAGGCTGTCACCT-----TTCTGGCAGTCCCTCCACTGGTTTCTGCC--TTCCCCTGGTTGGC-----------------------------------CCAAGTTCC---------CCCTAGCTAGACTACCCCAAGGCACCAAGCACCCCATCA-----------------CCACTTTCCCACATCTGTAGCTACTGCTGTTCCTGACTG--------------CTGACACCACAAAGACTCTTCCCTGATCACTC--------------CCTCAGCCTTCAAACTC--------AGAGA-------AAAAAAGAAATGACCAGGTCCTTATCT------------------TTTCTTCATTCCTGCTTGCCCCAGACT--TTTGGAACTGGACCTTCGAGGCCCACACA-------------ATCCTCT------------------------CCATCCAAACCTCTG--------GTCTGCT-CTCC------TCCCACTGGGATCGTGGGCCACAGGAGCCACCCACAGGCCTGAGGGACATAAGAGCCATCTCTCTGCTTCCGATTCCCATTGCCCCAGGCCCCTGCGTATCTAGCAACCTTCAGTTTACAACTGG-GAGTCTCCGTAGTGATAACTCGTCCAAGCAGTCTTCCCAGCAGCACCAA--ACAGGTGACCTCCCATTTT-TAGGCTGTAGC---------GGCAGCCCCCACT---------ACAGTTTCCT--AGTCATGT-----------GCAGGTTAG--------------ACATGGCCTTGGGTGATAGTAAAAGGCAAGGCCTGC---------------------AGGTGGTAAAATAAGGATT-GTTTAGAGTCTGCCAGGCTCCTTACAAGATCCACAGAAGCCAGCACTGCCACCGCCACATCAGGCTCAG-------CTTTTGGTCACAGGGAGAGGGTGAGAA-------TGGAGCCACTAGCATCTCAGAGTTT---------------------------CAG-------GGTCTGGG-CAGGGCGGCTGAGGGG--------------------------------TGGTCAAGCTGATAGGTCCTCGGGTGCCATT--------CTACCTC---ATTA---------GGGCATCTGACCACACTGCAAACT---------------ACCAAACTGTCC-CTGCCTCTGTGGTGAATTCA-AGTGGCACAGAGAGGGTTTCTGAGCCTTCCCAATATGTGACCTTAAAGCCCCCCTCTGCCCGGTTCTGTGCCCACCCCACACCCCGCTG---------CCC---ACATGGGGGCT---------ACAGACACTGCATCCCTGCTCCTGGACCACTGGCCCAATGGGAGTGTGGGGAAAGTGGGTGGTGGGG-GAAGGTCTGTGGGAATAGAAA----ACTGGGATGGCT------GAGACAGAA--TCA--GCGATGG---GGAGGGGTGTCATCCCCTAGAGGATGTAGT-CCCCCCAGTACCACCAAGCTCTCTTTGTCTAA----TACACCCGG-GGCAGACCCTGGTCTCCTTGGGG--CCACC---------------ATGACA-GCCAGGTAGA-TCACACAGACCTACTGATTTCTCAGATGAGGCCTGGGGCTGGGGGAACCCCAC-AGTGCCAGGACCCAAGACCAGG-----------------ATCCTGACTCACAAGCCCCACCTTC--CTCCCCTAGCAGGG--CTCCGAGAGCTGCCGGCTACC------TCAGCATGAACA----------------------GCTGAAGGTGGGGA--CTCACAAATTCAAGCCTGGTAGTTGTGAGGTCACAAAATCACGGCC------------CTGATCGG----------------TACAAGGTGGTTTGAGCTTTGTCCTCAA--------------------------TTTGCC-CAGGTGCCTGATGCAGTGTGGCGGGAACATTATAGTGT--------CCCCACCCC--TCCCCTGGGGTTCATGAAAGTGAGATCTGGATTAAGGAAACA-GACA----GACAAGCCGAACAGAGTGTGAAACCAGAGCCTGGAAGGGCAAGGTTCTGA---GCTGTGCCTTCCG---CTTGCCTGAA----CAGCCTGACACCAGGCTAAGCGGAAGAGGAC-CTGGATTAATCCAGGTCCACAATTATCACAATTGCCTCTCAACTTCTTGGCTTGCCGC----ACTCCCCCTCGGCTCCCTGCCAGGAGGGTATTGTGTTCCAAGAGAAAATACTTTTCATTTTTCTACAATTTCCGTTTAAAAAGTTCCAAATGTTCCGCCATATGATGTGAAATCAAACTTCAAGAAACTCCT-ATGGGGTTTTTGCCAGTGGAGAAAACAT-GGGGTCTGACACACTGACCCCAAGGC-AGTGAGGATCCAGCTTCAAGTCAAGTCTTTCTTCT--CTGTGTCCTTCCTCGCCACTCCCAAGGAGGCAGCACTAGGCCTCCTTCTCCAGGATA--GGAAGCTGTCAGCAGCAAGGCAGAGCCCGCCTGAGCTCCCTCCTCGTGGATTCGTCCTGC-----------------ATAGATTGTCCAGGGACATGCAGGGAAG--TGAGACCCAAGAGGCATGGGGTTT--GGCTCAATTCTGTCAGCTGTGTGG-ACTGGTATGCGTGAGGCC--------------CAATAACCAGGCCGAGTCAGTTCTCTTAGCTGCATGATTAACTCCGCC-AACTTCCTAAAGTTCTGAG--CAGAAAGTTCTT---TCCAATTTGCATGTGGTTAAACTAAGACCCAGAGAATCGAACATGATACTGGGGGGTGGGGTA--CAGAAGGCAGATGTA---GTTGGATCCCTGTGATAAGAATCTATTACATTGATTAGCCAA-----TATAGGTGA-CCCTCACTGTGAGGGATCCTGACCCCTCTACAGACCC----AGCTGAGAAACACCAACTTTCTGTA--------GATGAATGCTCCTTCTGTGT--------GAGCAGGAG-GGAGACAGTCGGCC----CATCTGGGTCCTCCTG-CCACTGCCTTC----ATCATCAGGACGAGGGC-------CTCCTGCCCCAAGCCTGGTGCAGCCTACCAGTCTAGC-CCCAGCATGGGGAAGTGGGCTCAAAGCCCAGCCACCCACCTATTTCAAATTGCTCATGTGGGAC--TAGCTAGTGGTCCGTAAAGATGTTCAAAGGCAA a score=142913.000000 s hg15.chrUn_random 521913 2148 + 611077 ATAAA------------------------------GGAGGAAGTAGGACTTGAACTCCCAGCCCCGGGCCCAGAAGCTCAGATGGGCCGAGGTGTGCAGGTGGCCCCTGGCTGGGCATGAATGCAGTTCCTTTTCCTCAGAGACTCCTCCCACAG-GCTTCTGCCCAGGGCACTTCCCAAAGCATGAGCTGCCGGCTAGACACTCACAGGCCCCCCAAGCTTTTCCCCACCCCCATCAGGGCAGTCTCCCCTCTGCTTTTCATACCAGTCTGAGGCCCCGGGGACTCTGTGGACTAGCGGCTCCTTTTCCATCAAGGCTCCAGGCCACCACTCAGCAGATCATTCAGGCTGCAGCCAGGCTCTCCCCTTCAACGTCGCTCTCACTAATTCAGACCAGGCCCGAGCTGCTGAACTCTACCTAGGGTGCCTCAAGGAGCCACAGATGCAATGCATCAAATGAGGAGCACGTTTCCAGCGCTCAGCCCCTCATAGACACGtggaattctagactctctggggtgggaaagatcttaaaaggcatcctatccagccacccccatccaccaccactgctgccatccagggccaggaggtccccacatgaccaggaaaagtgaacacaacatccagcctc---ttacacacctccagggacggagagc-----tcactacttcactgaatggcctgctctttctACCATCGGCTACATCCTTCCTGAAATGCATGTGAAACAGGTGCTTCCCCTTGGAGTCCCCAGCGCTGACCTCAGGACTGTGCAGGG-------CACTTGAGCCCCTCTTCCCAGAGACAGTGTTCTCAGGGTCTGAT-CCCCTCTCTTTCAGGTGTCACAGCCCAGTCTCTGCCGTGACCTCACACTGTGTCCTGGGACCACCTCAGGCACTATCTAATTACCCTTAATTTCTGAGCAACTTCAAGGTACCCAGAAGAGTCGGTGAACTGCCCCTCAGTGGGGACAATAGCCCCATGCACTTCTGAACCTGACCCAACTGCATCCACAGCTGTGGTGCGGCTCTTCGTACTGGCCCTTCTGGGACTAGATGCCACACCCTTGGGGGGctcac-tgaagcctcataatgaacctaataggcaagcgctgttattcccatcatacaggtgaggaaag-gctcagaaaagtcaagtgattcacccaaggc-cacacagccgtctgtgatagacccaggtctgccaactcctctgaaccaaagcctgAATGGGCTGCTGCTGCCATGCTC----AGGAGACAGGCCATCCCCAGTGCAGCAGCTGCTGTGACcccaactgcccacaggctggagctgcacccttcagcctggggcctgtgtggc-------ctgggtaggcccttctctgccgtgtgcagggc-------aggcagccaga----------------tgtgcccagggaatgaatgg---cccgtccacccggaagcag----------------gtgggagccggataaacaccccagctcccacaccactgggggtaact--ctcgggcccctgttctacacggcatccaacatctt-----cccaacaggatgaagctccaggtgctcgctgtgga------agcccctctgactctaagccactcactacttcctttccccattccccacctgtgtttcctgggatcatctgccaaataagtcctcgtctccgtgtcttcttctggggacccaaactaagaca----CCAAACACCTGAGATGTGAATACTAAGGGTCCCCTAGATCGCCCCGGACTTCCTATTCTAAAAGCCTGAGATCTGAATAATCTTCA--------------------GGGGTCCCCTAGATCACCCCGGACTTCCTATTCTAACT--GCCTGAGATGCGAATACTCAGGGGTCCCCTGAAGATCACC--CCAGACTTCCTATTCTAAACGCCTGTGGGGTGTTTTTGTTTGCTCGTTTCTGTTTGCGTTTGGACTTTGATACTC-AGAAAACACTTTGGGGTCTTACTCGACTTCTGGAAATGCAAATAAATGTACCAAAACCAGTTTGGGATTGGATGTGACAACATGGCTAATGGGAAGGCTGCGTTGGAGGCAGCGAATTCCAGGGCG-CTCCTCAAGGTGACATTAAAG----TAATAATGAGGTAACAG-CCGCGGCACAGTCCGGCCTGGACATTCGTGTCTGTGACTCATCTTGTCCTGCAAAAATCAAGTCCAGGATGTGCCTGGTTCTGGGTTTGAGCTCTTCCACTCCCTGGGACTAGACCCAGA s mm3.chr5 116036262 1896 - 149719773 ACAAA------------------------------GTTGGCACTGGAACGTGATC-----GATCCAGGCCT-GTAGCTTGAAT-GGCCGTGGTACA-----GGTTACTAGCTGGACTTGTGCATGGCTTCATTGCCTGAAA---TTATGTTGCAGTATTTGTTCCCAGGGC---CCCTATAGC--------TCAGCTGGATTCTCTGGGGTCCCCAGAGC------------------AGGTGGGCACCTCACTGCCTCTCAT--CAGGCTG---------GAAGTCTGCACTCCAGTGACTC--TGTTCATCAAGGGT-CAGGTTCCTGTTCAGCAGAGCATGCGGACTAGAGTCGGGTTTGCCCC--AAATGTGGCT----ATAATTCAGAGCAGGCCCGAG-TGCTGGACTC--ATTGGAGAGCCCTGAACAGCCCTGAAGCC--TGCATCAAATGAGGAGCATGCTCCCAGAACTGG--------CAGACAAAAGAAATTCCAGACTCT---GGGTGGG------TTTCAAAG--CTTCTACCCAGCCATCC----CAGCCACTGCTGCTACCATCT--GAACAGGAGCT-GCCACACCACCGTGACGCAT--------------GCCTTCCTGAGCACTCCATCCTGAACAGGGAGTTAGC-CCCCTGCCTCACGGAG----CTATCACGACAGCTGTCACCTCCAACACTCCTAAAATTCAGGTTAAA-AGTGGCTTTCCCGGGTAGTGCCCAGTAC-----------CTGCTCAGGGACACATCCACTAGGACATGTGTT---------AATGGCCCCAAGGTCTGATATCCCTTTCCCTTAGAGGACACAGCCTGATGTCTGTCATTGTCTCCTTCCGTGTGA-AGGATCAACCCAGGTAACACAGAATCAGTCTCAACTCCTGAGTGACTTTGAGGCATCCAGAGAGGTTGGTGAACTGCCCCTCTATGGGG-----------------TGGTAGGCGAGACCCAACTCTGACCTCATACCCATCTC-CCTTCTCTCCCCCACCCCCATG----CCGTTGCCA-------------------TGGAG------AGGCAACTCAGAAGGTGAACA--GGTGTTTCAACCATACCTGTGAGGAAAGAGCTCAGAGAGGGCCAGGGACT-GGCCAAGGTGCACGGAGCA------GGAGGGTCCCTAGCTGCT-TCTCACGTG-ACTGAAGCAT---GAGACTACTG--GCTTTGTTCGAGCAAGCGTCAGATC--TCTCTGTTCAGCAGA----------------GCATGCTGGCTAGAGCCA--------GGCCTGCGTCAAATGTGGCTGAAATTCAGAGCGGAC---------CTGAGTGCTGGACTCTCACTAGACAGCCCCAAGCTCAAGTTCCTGTTTGGAACTCAAGAGTAAATGGACTCACATTC-TGCAAAGGCAGACAGGGTGTTCCTGTTATAGCAGCTGTCTAAGGGCCCCAACTGCCA-ACGGCCAGGAACCTCTGCCTAGGGCCTT-GTTATTTCTGGTGTCTAGCTTCATGTGCACTCAA-GGTAGGCAGCCACAAGTGATAA----GGAGTTCAGGGTTCTTCTACCTGGAAGCAACTTTCCA-----------------------------CCTAGGATGGGC---------AGGCCTGG---------------CTGTGAAGCCAGGACAGAACAGTCCCCATAGCTCTGAGAGACAAAGCCCTAGTGGCCC----ACAGCCGATGACTTCCTCTCTGTGACCCTTGTGCTCCCAACACTCCTCACCTCCCTCTGCCCCCTGTGTGGGCTTCCTGAGA--------AACTTGCCTCTTCATCTCAGCATCAGCTGCTGAGACCTGAAG----CCATGAGAGGACCTACCCAACTT----TCCCCTACACCTGAGGGCC-----------CTTACATCTGCTT-------GGCTTATACACTCTAGAAAATATTCTGGGGTCTTCTTCATTTGTTCAAGGTGAAAAGAACTTTACCCAAAACAGTTTGAATGTG------------------CTGGGATTGTTCAGTGGACTATAGCTGGTTCTGGGACATCTCTTCAAGGTAGCATTTAAGAACACAAAACCAAAGCAACAATTCTTGATATGA------------GTGAGTGTCTGTGGC--------CCCTATGGGAGCTAATCCCAGGGCATGCTCTAGCCTGGATTCCAACTC--TTGATTCCTGAAACcagagagaga s rn2.chr14 77806712 1924 + 107821284 acaacagcagcagcagcaacagcagcagcagcagcGCTGGCCCTAGAATGTGATC-----TATCCAGGCAT-GTAGCTTAAAT-GGCCGTGGTACA-----GGTTACTAGCTGAATTTATGCATGGCTTCTTTGCCTGAAA---TTATGTTGCAGTATTTCTTCCCAGGGC---CCCTGTGAC--------TTGTCTGGATTCTCTGGGGGCCCCAGGGC------------------AGGTGGGCACCCCACTGCCTCTCAT--CAGGCTG----------AAGTCTGGGCTCCAGAGACTC--TGTTCATCGAGGGT-CAGCTTCCTGTTCAGAAGAGCATGCAGGCTAGAGTCAGGTTTGCCCC--AAATGTGGCT----ATAATTCAGTCCAGGCCTGAA-TGCTGGACTC--ACTGGAGGGCCCCAAGCAGTCTTGAAGCC--TGTATCAAATGAGGAGCATGCTCCCAGCACTGGG-CCCTGGCAGACAAAAGAAATTCCAGACTCT---GGGTGGG------TTTCAAAG--CTTCTAACCACCCATCC----CACCCACTGCTGCTACCATGT--GAACAGGAGCT-GCCTCACCACTGCGAAGCGC--------------GCTGA---GAGCGCTCCTTCCCGAACAGCGAGTTAGGGTCACTGCCTCACAGAT----CTATCACATCTGCTGTCACCTCCAACCCTCCTAACGTTCAGGTGAAA-AGTCTCTTTCCCTGGCAGTGCCCAGCGC-----------CCGCTCAGGGACACATCCACCAGGACATGTTTT---------AATGGCCCCAAGGTCTGATATCCCTTTCCCTGAGAGAACACAGCCTGGATTCTGCCATTGTCTCATTCTGGGTGA-GGGATGAACCCAGGTAACAGAGAATCAATCTCAATTCCTGAGTGACTTTGAGGTGTCCAGACAGGTTGGTGAACTGCCCCTCTATGGGG-----------------TGGCAGGCCAGATCCAACTCTGACCTCAT---------------TTGCACACACCCCCGTA----CCATTGCCACCCCACGGGGCATCTGGGGTGGAG------AGCCAATGCAGAAGATGAACA--GGTG-TTCTACCATACCTGTGAGGACACAGCTCAGAGAGGGCCGGTGGGT-GGCCAAGGT-CATGGAGCA------GGTGGGTACCTAGCTGCT-TCTCATCAG-GGTGAAGCCTG-GGGGACCAGCG--GCTCTGTTC-AGCAAGTGTCAGA----TCTCTGTTCAGCAGA----------------ACACGCAGGCTGGAGCCA--------GGCCTATGTCAAATGTGGCTGAAATCCAGAGCAGGC---------CTGAGCGCTGGACTCTCAATAGAGAGCCCTGAGCTGAAGTTCCCGTTTGGAACTGAGGAATAAATGGACTCACGTTC-TGCAAAGGCAGACAGGAGGCTTCTGCTGTGGCAGCTGTCTGAGCACCCCAACTGCCA-ACAGCCAGGGCCCTCTGCCTAGGGTCTTCGTTATTTCTGATGTCTGGCTACACGTGCATTCAA-GGTAGGCAGCCACAAGCGATAG----GGAGTTCAGGGCTCTTCTACCTGGAAGTGACCCTTGA-----------------------------CCTAGGATGGAC---------AGGACTGG---------------CTGCGAAGTCAGGACACAACAGTCCCCATAGCTCTAAGAGACAAAGCCCCAGTGGCCC----ACAGCCGCTAACCGCCTCTCACTGACCCTTCCCCTCCCAACATTCCCCACCCACCTCTGCTTCCTCTGTGGGCTTCCTGAGA--------AACCTGCTCCTTCATCTCAACATCAGCTCCTGAGACTTGAAG----CCAGGAGAGGACCTACCTGAC------TCCCCCACACCTGAAGGGC-----------CTCACATTTGTTT-------GGCTTACATACTCTAGAAAACACTCTGGGGTCTTCTTCATTTGCTCAAGGTGAAAAGAACTTTACCCAAAATGGCTTGACAATG------------------CTGGGATTGTTCAGTGGACTATAGCTGGCTCTGGGACATCGCCGCAAGGTGGCATTCAAAAACAT--------AGTAATAATCCTTGGCACGA------------GTGAGTGTCTGTGAC--------CCCTACTGAAGTCAA-CCCAGGGCACACTCTAGCCTTGCTTCTGACTCTTTTGATCCCTGGTTCCAGGGAGAGA a score=137840.000000 s hg15.chrUn_random 524157 1131 + 611077 CAAGGCCACGCAGCCTCCCCAAGCCTCTGTTTCCCTGTAGGGTTCCCGGAGGGCTATGACGCAAAGCCCCCGCAGCACTTGGCACCTGGTGTGTGCTCGGCAGACAGTGGTGACCGTCAGGAG--CTGGGCAGAGAAGCAGACCAGG----ACCTGGAGCCAGACGAGGAGGCCTTCAGAGATGAGCCGGAAAAGCCCAGGAAGCAGT--CGTGGATTGCACAAATGAGG--------CTGGAC---TGGAAGATGCTGGAGCCCAAG-------TGAAGCTCTGGCTCTC---GTCTGTT----AGAATGT-----------------------GGCCTCCGCTCCTGCTATGGGGTCATGCAGTGGAGGTCTGGG------------ATGGATCAGGAAAAGCTGCTTCACACACATCTGCTCGGCCA-TTGCCCTCGTGCCACAGACAGAGCTAACGAGCCAGATGCCA---CAGCTCCTGATACCGACCATTCACCGACTCCGCGGCCAGaagcacctactatgtgcctactacgcaccaggcaccgtgcCCACACAGGCCCAGCCAGCGCCCTGCCCTGTCCTCTCAGCCGACACTTCCCCGGGCGCATCTGCCAGAAAGGATTAAGAAGTTGCCTTAGGAAGGCCTGGCTTTGTTTGGGAAATTTCCCCCAGCTGAGAAGGAGAGGCCAGACAAGGAAAGAATGACCAATTATACGCTG-TGTTGTCTTCAGATGAAAGGGCCTTTTTGTGGCCCTCCTCCATCTCCTGTTTGGGCTGTCAACAGCAATTTGACGAGGAATGTTGCTCGGCCTGACCTGTTTTTTCAAGATGGTAACCTATATTGTGTATCATCTCAGCCCTGGAGATCACCAGCCGGCACCCTCCTCAGCACAGTCCCCCCAGTTGAACTTCACCTTTAAAACCAGGAAAATTGATTGGAAAAAAATTCAGGGAAATCTCCCACTAATGATATTTTGAGTTCAGGAACAAGGGGGGGAATTAAAGTGGCTTTAATCTGATTCTCAACATGGATTTCAGTGGTGAATGGTCAATTGTTACTAAATTCTAATTGGTTCTGGGTCACTCCCTTTGAAATAGTGGCTGTGTTCTGTTCATTTTTTCAATTAAATCTTAACAATTCACATCTGACAAAACTCAAAAATCTTGTCAAAAATTGTTCAGATTTGTATAGTAAGA s mm3.chr5 116038257 1038 - 149719773 agag---agacaACCT-------------------------------GGAATGTT---------GGCTTCTGGATTACGTGGCA-------------------------GCAAAGGTCAGAAGTTCTGGG----------GACCAGGGCATACCCAGGGTCAGAGAAAGA----TCCAGAGC----CCAGGGA----CCTGAGACAGTCACATGGTTTTGGCAGGCCTCAATTTCCTTCTAGGCACATGGCAACAGTTA--GCACAAGGTCTATCCCAAGGTCTGCCTCCTTGGATGTGTTCAACAGACAGAGGTATGGACACCCCCCACCCCCCCATCCCGGCTCCTGCTGCAGGA----GTGACTGAGGTCTGAA-----GTCAGAAATAAACCAGAACAAGT-----------CATTTGCT--GCCACCTGCCAAAGGACC----ACAGGACAAACAGCTCACAGCACACAGTAAACGTGGACATTGGttattcacaaactctgttttaataagcacctactatgtg-----------ctgggcactgtgcccactaggggtCCCACATCAC--------------TCAGCTGACACCTCCCCTGGAGCACCTGCCAGAAAGGATTAAGAAGTTGCCTCAGGAAGCCCCAGCTTAGTTCTGGAATGTTCCCCCAGCTGAGAAGGAGAGGCCAAAGAAGGAGAGGAGGACCAATTATGTTTAGCTGCTGTGCCAAGATGAAAGGCTCTTTCTGGGGCTGCCCTC--TGTCCTGTTTGGGCTGTCAACAGCAATTTGATGAGGAAGGCTGCT-GCCCTGACCTGCTTTTTTAGGAC-----------TTTAGGATGTCCTCAGCCA-GAAGGTGACCAGCCAGCATCTTCTTCAGGACAGT--CCCCAGTTGAACCTCACCCCTAAAATTAGGAGTACTGATTGGAACAAAATTCAGAGCCGTC--CCTCTAATGGCG-TCTGAGCTCAGA---GTGATGGCGAGTTAGCGTGGCTTTAATCTGCTGCTAGCCGTGGCTATCCGCGCTGAATGGCTGATTGTTACTAAATTCTAATTGGTTCTGGGTCACTCCCTTCCAAACAGCCGCTGCGTCCTGTTCATTTTTTCAATTAAATCTTAACAATTCACATCTGACAAAACTCAAAAATCTTGTCAAAAATGGTTCTGATTTGTGTGGTAAAA s rn2.chr14 77808631 1030 + 107821284 AGAG---ATGTGACCT-------------------------------GGGATGTT---------GACTTCTAGATTATGGGGCA-------------------------GCGAAGACCAGATATCCTGGG----------GGCCAGGCCACGCCCAGGGTCAAAGAGAGA----CCCAGAGT----CCGGGGA----CCTGAGGCAGCCACATGGTTTTCACAGGCCTCAGTTTCCTTCTCGGCATGTGGCAACAGTTATAGCCCAAGGTCCGTCACAAGGTCTGCCACCTCAAATGTGCTCAAAAGACAGA-----------------------TCCCCCGACTCCTGCTGCTGGA----GTGACTGAGGTCTGAGAGAGGGTCAGCAATAAACCGGAACAAGT-----------CATTTGCT--GCAACCTAACCGAGGACC----ATAGGGTGAACGGCCCACAG-------TAGACGTGGTTATCGGTTATTCGCaacctccattttaataagcacctactatgtg-----------ctgggcactgtgcacactaggggtcccacaTCACCCAGCTGCCTGTTCTCAGCTGACACCTCCCCTGGAGCATCTGCCAGAAAGGATTAAGAAGTTGCCTCAGGAAGCCCCGGCTTAGTTCTGGAATGTTCCTCCAGCTGAGAAGGAGAGGCCAAAGAAGGAGAGAAGGACCAATTATGTGCTGCTGCTGTGCCAAGATGAAAGGCGCTTTCTGGGGCTGCCCTC--TGTCCTGTTTGGGCTGTCAACAGCAATTTGATGAGGAGGGCTGCT-GCCCTGACCTGCTTTTT-AGGAC-----------TTCAGGATGCCCTCAGCCA-GGAGGTGACCAGCCAACATCTTCTTCAGGACAGT--CCCCAGTCGAACCTCACCCCTAAAACTAGGAGTGCTGATTGGAACAAAATTCAGGGCCATCTCCCACTAATGGCG-TCTGAGCTCAGA---GTGATGGCGAGTTAGCGTGGCTTTAATCTGCTGCTGGACGTGGCCATCCGCGCTGAATGGTTGATTGTTACTAAATTCTAATTGGTTCTGGGTCACTCCCTTCCAAACAGCCGCTGCGTCCTGTTCATTTTTTCAATTAAATCTTAACAATTCACATCTGACAAAACTCAAAAATCTTGTCAAAAATGGTTCTGATTTGTGTGGTAAAA a score=22342.000000 s hg15.chrUn_random 534113 214 + 611077 TTTTAATCAGTGGCCACTGTCAGGCACCCCCTGAGGGCAGGGTGCCAGCTAG----GGGTTCCCTGTGTGCAAAAGTGACA-TGGGACAC-GGAAAT-----GACTATGACTCAGCTCCTGTCTCAAAGTGCCAGGCCCAGGGCTGCTGACACAGTGGCAAAGTGGGAATTCCCTGACCATTTGCATTGCCACATCAAGGGCTCTAAGAAAGTCTACAAATAAAA s mm3.chr5 116040287 206 - 149719773 TTTTCATCTGTGGTCACTGCCAGGTGTCTGCAAATGCCACGGTGCCAGCCGGCCGGTTGCCCAGCATGTGTAACGGTAGTAGCGGGACTC-AGGGATCCACAGACAAT---TGGGTTCTTATCTCAAGT-----------GTGCTGGCAGTTCCTGGGCACAGTGAGACTCCCCTAAGCATCTG---GGCCACATCAA-GGCTCAGAGAAGTCCTGCAATTAAAA s rn2.chr14 77810905 203 + 107821284 TTTTAATCAGTGGTCATTGCCAGGTGCCTGCAAACGCTCTGGTGTTAGCCAG----GTGCCCAGCATGTGCAAAGGTAGTAGAGGGACCCCAGGGATCCACAGACTAT---TGGGTTCTTATCTCAAAT-----------GTGCTGGCAGTTCATGGGCACAGTGACACTCCCCTGAGCATCTG---AGCTACGTCCA-GGCTCTGAGAAGTCCTGCAATTACAA a score=12428.000000 s hg15.chrUn_random 534483 146 + 611077 aatttaaaaaGCCACTAAGTGATCTGATGTC----------TCCTGAGAA-----------TATCTTTGACTTAAGAATTCCTGGTTCACACCAGGAGGAGCAAGATGTTTCTGGGAACGTGGTTTGAGAAATGCTGTTCACGGTGAAGCCACATCTGCAAAGAGCT s mm3.chr5 116040493 141 - 149719773 AGGACAGAAAGCAGCT------TCTG---------------TCCTGGGAAGCTCTGACCAGTGTCTCTG-CCTGAGAATCACTTGTTCACACCAGGAGGACCAAG-TCCTTCTGGATCTGAGGCTTGGGAAAGCCTCT--AAGGCAGCG-CACATCTGTGAACAGCT s rn2.chr14 77811108 156 + 107821284 AGGACAGAGAGCAGCT------TCTGAGCTCATTTGCACCCTCATGAGAAGCTCGGACCTGGGTCTCTG-CTTGAGTATCACCTGTTCACACCAGGCAGAGAACA-TCCTTCTGCATCTGAGGCTTGGGAATCTCTCT--AAGGCAGTG-CACGTCTGTGAGGAGCT a score=14381.000000 s hg15.chrUn_random 534930 141 + 611077 TTATATCCTGCATACAGTTGGTACTCTGTAATTGCTTTCTGGACACA-----------------------------------------------AGA-ATAAAGAAACAGGATTCAGAA-ACAGGGGAATGGGAAGGACAAGAAGAACCTCGGGGTTGGCTGGAGTGGCTCTGGAGAGGACCTGAGCTGA s mm3.chr5 116040790 174 - 149719773 TTACACTCTTTTCACAGTTGGTAATCCATAAATGCTTTCTGAacacatacacacacacacacacacacacagagagagagagagagagagagagagagagagagaACAAGTATTTTGAAGACAGGGGCATGAG------AGGAAGAACTTCAGG------TGGGGTTCCC----AGAGGACCTGAGGTGA s rn2.chr14 77811486 126 + 107821284 CTACACCCTGTACACAGCTGGTAACCCATAAGTGCTTTCTGAACACA-----------------------------------------------AGA-AGAAAGAATAAGTATTTTGAAGACACAGCCATGAG------AGGAAGTGCCTCGGG------TGGGGCTCCC----AGAGGACCTGAGGTGA a score=22574.000000 s hg15.chrUn_random 539061 403 + 611077 CCTCCGCTCATGCCCCGAGGCCAGGCA---GCGGGCT-----GGAGACAGCTCCA---GGCAGAGATGGGAGGGCCTCGAACCTGCGTCCTGTGTCAAGGAGGCACCAACAGAAAACCATAAAG--------GGCTCAAGCTGGTTCCCGGGCAGGCAGCCCCTCTCGTCCCTAGACAC------TGCAGTGGGAGTGCAATCCAGGGTCTCCACCTCTCCTGACCCTTC--CAAGCCCCGGCTCTGGCTCCAAGGGGCTGTGGGCAAGGAGAGCGTGATGAGTATTGACCCTGCATTCAATGGGCAATCACTCATGTTATTTTGGGTAACAGACCTTGGGTGAAGCCAATTTAGTGGCAATTTGTAATAAAAA-TAACAGATGGGCTCAGCCAGCAAGGCAGACATCCAGTGAACGCGGCTGCAGGGAGG s mm3.chr5 116043556 375 - 149719773 CTTTTGCTTGCTCCCTGAGCCTGGGCAGTAGCAAGGCATGTGGGAGCTGGGGTTGTGGGGTGGGGGAGGGAAGAT----GACCCTCATCC----TCAAAAATGCACCCCAGGGATCCTATGAGGACAGAGGTGGCCAGAGCTAGCTCC-----------TCCCTGGCGCTCCAGTGCAGACTCATCACAGCCAGGGAGC--TCTCGGGTTCTCATCTGCCTGGGCTCTTCTTCAAGCCCTGGGTCTGGCTCTAAGGAGCTGTGGACAGATACAGCG--------------------------GGGCA---ACCCAGTGTGTGTCAAGCA----GTCTTGAGTTAA-TTGATGGAGTGAGGAACTCTAACAGAAGTTAGCAGATGAACT-GCCCAGCCAGGAAGCCACCCAGCAGTGGGGGTTGGGGGGAGG s rn2.chr14 77814573 312 + 107821284 TTTTTGCTTGCTCACCGAGGCTGGG-----ACAAGGT---------------------GGTG---------------------------C----TCAAGAATGCACCACAGGGAGGTTATGGGGACAGAGGTGGCCAGAGCTAGCTCC-----------TCCCTGGCGCTCCAGTGCAG-----------TCGGGGAGC--TCTCCAGATCAAACCTGCCTAGTGCCTTCTTCAAGCCCTGGGTCTGGCTCTGAGGAGCTGTGGACAGATACAGTG--------------------------GGGCA---ACCCAGTGTGTGTCAGGCA----GTCTTAAGTTAA-CTGATAGAGTGAGGAACTGTAACAGAAGTTAGCAGATAGGCT-GCCCACCCGGGAAGCCACCCAGCAGTGTGGAC---GGGAAGG a score=43924.000000 s hg15.chrUn_random 545045 439 + 611077 CCACACGCGCCGTGCCGAGCCCCGGGCCCCAGTTCCAGGAGCCGCGTCTCTACGGGCCAGTGGGTCCTGAGAGAGTAGGGCTTCGGGCGCTCGGGGAGAGGAGGCGGAGGAGGGGTGAAGCCGAGGGGTGGCTTTTAACGAAAAAGAAGTTGAAGCATCAGCTAAGCCATTAGGGCTAATGCGATGTACTGTAAGACG-GGGATCAATGCCGGGCCTCGGGGACCGGCGTGGGGGAGGGGGCAGCAGGCCGACCGCCCCCAAGCCGGTCGAGGCCCCCGTCCATTTGGGGGAAATGGATTTTCGCGATTTAAGAAA-CAAACCCAAATCAAAT-GAGCGAGGCCCGGATGTGCTGACGCTGCGGTTACGCGCGCGGAGCTGGAGCCCCGAGAGCGCTCTAGGAAA----------GGCGCAG---CGGCGACCGCGGGAGGGGGTGAGAAGCCGA s mm3.chr5 116046898 378 - 149719773 CCCTGCGCGCCTCGCCGGCTCCGGAGC-----------GCGTCGCCTCCCCGCGGGCT-GCGGGTCCC-AGGGGCGAGGTCCTC-GGCGC------------GGCGGAGGGTGGAGG--GCCGAGGGGCGGCTCTTAA-GGAAAAGAAGTTGAATCATCAGAGAAACCATTA-GGCTAATGTGATGTGCTGTAAGGCGTGGGATCAATGC--GGCC----AGGCCGCTGGGGTGGGGGGGGGGGTGGG--GGTTGCCGCCGAGCATG-CGAGGCTCCTGCCCATTTGGGGGAAATGGATTTTAGAAATTTCAGAAAGAAAACTCAATCCAAATCTA----------GATGTAAAGGCGCTGTGGTTG------------TCAAGCTTCGAGAGCCATTTA------------TGTCGTGTAGGAACAGTGACCTCGGTGGGGT----GAAGCCAA s rn2.chr14 77817941 376 + 107821284 CCCTGCGCGCCTCGCCGGCTCCGGAGC-----------GCGTCGCCTCCCCGCGGGCT-GCAGATCCC-AGAGGCGAGGTCCTC-GGCGC------------GGCTGAGGGTGGAGG--GCCGAGGGGCGGCTCTTAA-GGAAAAGAAGTTGAATCATCAGAGAAACCATTA-GGCTAATGTGATGTGCTGTAAGGCGCGGGATCAATGC--GGCC----AGGCCGC---GGTGAGGGGCGCAG----------GCCGCTGCGCATG-CGAGGCTCCTGCTCATTTGGGGGAAATGGATTTTAAAAATTTCTGAAAGAAAACTCAATCCAAATCTAAAGAAGCCTTGATGTAAAGGCACGGTGGTTG------------TCAGGTTTCAAGAGCCACTCAGAGAGAACTCCCTGTGGTGTAGGGACAGTGACCTCGGT----------------- a score=20153.000000 s hg15.chrUn_random 548033 163 + 611077 GGCCGGGTAGGGGAGGGGAGCGAGAAGTGGCGAGGTGAGAACTGAGGGGCGAGGCTGAAGGCTGAGCCAGACTTCCAGACGCCAGAGAGACGCCAGGTGAGCCg----ggcgggggcgggggcgagggcgggggagggggcggggccggaaccgcggggagggggcg s mm3.chr5 116048709 152 - 149719773 GGACACGCAGGATGAGGTGGATAGGAGACGAGAGGTGAGGACGGAGGGGAGGGTCTGCAGACCGCAGCAGACT-----------GCGAGACGCCAGGTGAGCGGCCTAggcgggatcggag--gggcgccgcgggccgggcggggctgggcc--cggcgcgggggcg s rn2.chr14 77819705 151 + 107821284 GGACACAGAGGGTGAGG-GGATGGGAGACGAGGGGTGAAGACGGAGGGGATGGTGTGCAGACCGCAGCAGACT-----------GCAAGACGCCAGGTGAGCGGCCTAGGCGGGATCGGAg--gggcgccgcgggccgggcggggcTGGACC--CGGCGCGAGGGCG a score=86.000000 s hg15.chrUn_random 548196 143 + 611077 gggCGCCCGGGAGGGCCGCGAGCTGGGAAGGTCCCGGGCGGCCGGAGACGGT--GAAGAGGCGGGGCCGAGTCGCGTCCGCGGGGTCCCGGACACAGCGGAGCTGGCGCCACTGTCGGGGTTCCGTTCCATCTAGGTCGGGCAGC s mm3.chr5 116048861 106 - 149719773 gggcg-------gagcTGCGAGCCAC-AGGGTCCC-------TTGAGACTGCCCGGAGCGTCTAAGCCCAGTAAGGTCGGAGGAG---------------GGCCGGCGTCTCATCCCGGGCTCCGCAGTAC---------GCACC a score=53646.000000 s hg15.chrUn_random 548339 1178 + 611077 CCCGCGGGTCCGGGCGCCGCTGCCCTCCTCTACCTGCTGGGAAGCGCAGGCCGAGCAGGGATGAACCTGGCTCCAGGGCCCCA-GCGGGGCAGGCAGGGCCCGGAC-CAGAAGCTGCGGCACCGACTTCCCACTGCCCGACCGGGCGA----CGCGGGGCCTGGGA-----GGGGCGGGTCGGGATCAGAGCGCCGCTGCGCCCCGGAGGCCGCGCTTCCCGCGGCCTGTGCCGAGGAGCCTCTCCGCAAAGAAATAAACACGCCCTGTCTCCCCGACCCCGACTCGGGCCGGTCAGAAGTAGGGAGAATCACG----CTCGGGAAAGGGGGGTAG-GGAACGACGGGGGAGCCTCGGTGACCAGGGCAGATGCACGCGCGCGCGGGATCCTCGTGCGCCG--CGAAGAGGGACGAGCAGAGGAGCATCGGAAGAAGACAGGCGAAGGGGACCGCGGAGCAGC-----GTAGG----CGGAGCCCCGGGGGCACGGCCGAGGCTGCGCTTCAGGAGTGTCCGCCAGGCGCC--TTCCCGGGCGGTTGGCGAAACCCGAGGAGGCCCACAGCTCTGGCCTGGGGCGCCGTCGTTCCA-----GGGGCCTCTGCGCCTCTCTCTGGCGTCTGTCTGGACCCTCAGAG-CCCCGGGATCAAGGCGCCCATCCTCTTGATGGCGGGGCGCACCTTTCGCGTGGGTCGGGCGCTGCAGACCAAGCACGCCGAGTGCGTCAAGGAAGTGCCCGGAAACCAAAGACAACGCACCCGGGACCAAGAGGAGGCCGCTGCGCGCAACCTCCCAAACACTGCA--GCGAAGTCGGAACCACGTCCGCGTGGGTGACTCGGGCTGGGGAGCCGGGAGGCGGCGCCAAGGACCCTTCAGCCCTTGTCCGTCCTCCCTGATATGTCCTCGACGCGGTCTGAGGCCTCCCCAGCGGAGGCGACGCCCCGGCGCCAGGTGCCCTGGGTGGGGGAACCCGGAGGGGGCACCACGACCAGTGGAGAAGGGGCGGAG-GCCGGGAAAGCTGCGTGGA----------------AAAGAGGAAGGGTTAAGACTGAAATCATTCTACAGAGACCACGTTAATGGGTTTA-AATGCGAACATTCTAGCTAAGTAGAAAAAAA---------TTTAAAAGCAGAGTGCAAGCTGGACCAAAGTGAGACCCCGATTGGGCGTAGATAAACCTGCAAC-CAAAACAGC--CCCAGGCAGAGATTCAGCC s mm3.chr5 116048967 920 - 149719773 CCC-----CCCCCCCCATGTCTCTCACTCCTACCTGATGGAGA--------------------AACAGGGCCTCGTGGCTCCATGCGGA------AAGGTGCTGACGCGGGATATGCATCCGCG----TCCGCATCCCGGTGGGTCGAAGCGCGCGGAGTCCGGGACCCATATGGGGAGGCAGGACCAATAAACCAGAGCGCC---------------------------------------CGTCGCAGGGAAGGAGTCACTTCCCGCATGGCAGGACGC-----------GTGAGAAG----AAGGATCACGGCCACTGGGGAGAGTCGAGCGGGAGAATAAC------GTCGCTGTGTCCCGGGC---------------------------GAACCA--AGAGAACCAGCAGGCGGAGG-GCGGGGAAGGGAGACATTCCAGGGCGAGCGCAGAACCATGGCTAGCAGGCGTCTGGATCCGCAGAGGTGGTGCC---CCTGCAATCCCGGATCACGCAGAGCCCACGGGTGCTTGGTCTGTTT-----------AGCGGTCTCCAGCCCAGGGCT----TCCCGGAGGTCCGGATGCAGCCCTTCTCCATCCACCCTTCGCGAGTGTCG----CCTGTGGG-CCCCG-------AGCCTCCTTCC--------------CGCATTCT-------------GCGCCGCAGATC---CCCG----GTGCT------------CCAGAAACAGAAGACCTAGATCCCAGACCAGAAAGGCGGCCGCAGGGCACTACCCC----ACACTGTGTTGCAAGGTCG----------------------------------------------------CGACCTTTAAGCCCTTTTGCCCCCTCCAA-----------------------------------------GGCGCCC---------GGACCCCGGGT-GAGGAGTCCGGTGCGGTCACCGTGACCAGAGTGAGAGGGATGAAA-CCCCGGAAAGCGGCGTGGG------------GAGAAAAGGGGGTTGTTTGAGACCAAAATAGTTGTAAAG---CTAAGTATGTGAGCTTT-AACGGTCAAGTTCTAGCTAAGCCGCGAGGATGCACAGCTTTTTAAAAGCCGAGTTTTAAGTGAACCCAGGTGAGACTCAGATTGGGTGAAAATAAAATTGGAACGTACTGCAGCTTCTCGGGTGGAAAGTCAccc s rn2.chr14 77819912 897 + 107821284 CCC-----CCCACCCCTTGTCTCTCACTCCTACCTGATGGCGA--------------------AACAGGGCTTCAAGGCACTG-GCGGA------AAGGTGCTGACGCGGGGTCTGCCGCCGCG----TCCACAGCCGGATGAGTCGAAGTGCGTTGAGTCCGGGATTCGTAGCCGGAGGTGCAAGTAAGAAACCCGAGCTCC---------------------------------------TGTTGTAG---AGGAGTCACCTCCTGAACGGCAGGACGC-----------GTGCAAAG-------GATCGCAGCCACTGGGGAGAGTCGAGCGG-AGAATAAC------GTCGCCGTGTCCTGGGA---------------------------GAGCCACGAGAGAACCAGCAGGCGGAGG-GCGGGGAGGGAAGACCTTCGCGGGCGGGCGCAGAACCGTGGCCAGCAGGGGCCCGGGCCCTTAGAGGTGGTGCC---GGCTCAATCCTGGGTTGCTCAGAGCGTGCCGGTGCTCGGTCTGCTT-----------AGGTGTTTT----------------------------------AGCCCTTCTCCATCCGCCCTTCGCGTGTGTCT----CCTGTGGGGCCCCC-------AGCCTCCTTCC--------------CGCACTCT-------------GCGCCACAGATC---TACT-----TGCG------------CCGGAAACAGAAGACCTAGATCCCAGACCCCAGAGGCGGCCGCGGGGCACTACCCC----ACACTGCGTCGCAAGGTCG----------------------------------------------------CGACCTTTAAGCCCTTTTGCCTCCTCACT-----------------------------------------GGCGCCC---------GTATCCCGAGT-GAGGAGTCCGGAGTAGTCACCATGACCAGAGTGAGAGGGATGAAACCCCCGGAAAGCTGCGTGGGAAAAAAGAAAAAGAAAAAAGAAAGACGTTTGAGACCAAAATGGCTGTAAAG---CTAAATACGTGAGCTTTAAACGGTCAGATTCTGGCTAAGCCCCGAGGAAGCACAGCTTTTTAAAAGCGGAGTTTTAAGTGAACCCAGGTGAGACTC-GATTGGGTCAAAATAAAGTTGGCCCGTACAGCAGCTTCTCTGGAGGAGAGTCACCC a score=28984.000000 s hg15.chrUn_random 551551 425 + 611077 CCTGAGCAGCTCA------GGGTGGCTGGAATCCGGACTCAGGTGCGGAGAGGGTGAGGAGGTGGGTGGAACCCGCGAGGGGGGAGGGTGCATGGCGCATGTGGTGGAGGCAGATC-GAAGCCATTCATCTTCTGCCAGTGGTGGAGCCAACGC---GCTCGAGGTGCACCCGCGATCGATGGCGCCGGAGCTCAGGACTCAGAGGGGCCAGGCGTACCCCCTGCTTGCCCCCAGCCTGGTCCCGCTTGCTC-------TCCAGGGCT----------CTCTGGGTTCCAGGTCCTACACTGCTTTTCTCTGGTTTGTTCTGCCTTTGGTGCCAGCCCCAAGACGCCAGAGCCCCACGGATA---ACAGGGCAGGGCCAGCTTCCCTGCGCCCAGTTGGCCTAATCCAG--CTTGGGATCTGTTTTCTCTCTTAACAGTGT-TCCAGGCCCCAGCCCT s mm3.chr5 116051443 385 - 149719773 CCTCTGCAGTTCAGAGTGATGGCAGCTGGA--CCTCACTTAGCTGCGAAGGAGGATGGACCA-----GAAACCAGTGAGAGGTTAAGCT--------CACCTGGCAGAGACAGATC-GAAACCATTCATCTTCTGCCAGCAAC--AGTCAATGC----AAGGAGGTGTGCCTGCAATCGAT---GCCAGGATCCCGGACTCACGAAG--------------------GCCCCCAGCCAGGCCTGGC--ACCC-------TCTAGGACTTGAATGTTGCCTGTTGAATTGGAATCAGG-------TCTCTCTGCTTAGGGCTGCCTT------CCTACACTGCACCCCAGAAGCTGGTGGATACTTATGGGGCATGGCGAGCTTGCCTAAGTCTGGCAAG-CTGAACTAG--TTGGGGA---GCTTCCTACTGCATCACTGGATCCAGTTCCTAGCTCT s rn2.chr14 77822342 385 + 107821284 CCTCTGCTATTCA-ACTGATGGCGGCTCAA--CCTCACTTAGCTGCCCGTGGGGCTGGACCG-----GGAACGAGTGAGAGG-GAAGTT--------CACCTGGCAGAGACAGATCGGAAATCATTCATCTTCTGCCAGCAAC--AGTCAATACAACGAACGAGGTGTGCCTGCAATCGAT---GCCAGCATCTCGGACT----AAG--------------------GGCCTCAGCCAGTCCTGGC--ACCCTTGAATGTTGAGGGCTTGAATGTTGCCTGTTGAATTTGAATCAG---------------GCTTAGGGCTGCCTT------CTTACACTGTACCCCAGAACCTGGTGGATACTTATGGAGCCCGGTGAGCTTGCCTGAATCTGATAAG-CTGAGCCAGTTTTAAGAA---GCTTCCCCCTGCATCACTGGGTCCAGTTCCTAGCTCC a score=295338.000000 s hg15.chrUn_random 552436 3391 + 611077 GAAGCAGTCGAATAAAACAGTTGCATCACAGCGATAACCCCTTTGGCCTGAGCTTCAATGACCCCCTTCTAATAGGGCCGAGGAGGCAGGCGTCCTCGTGGTGCGAGTGCCC--GAGGCCTCGCCAGTCTGAGTAGCATCGCCGTTGGGAAGGCCGAGGC----AGTG----------------CCACCG---GCACACAGTGCCTGGACCTCAAAAG-GAGAGGCTACTGCTGCTGCTTCTGCTTGCTGG-GCCTGTGTGGGACTCGGAGGCTCCGCGGTG-----------TCGCCGGCTGTGCCCTGGCCCCTTTCCTGGACTCGCAGCGATGTGTCCCGGTGACTGGGTGAGGCCAGCACAA---AAGCGACAGAAGCCCAGAGGGCGAGGGTCCCAGGAGCCTGAGTCAGGGGTGCGAGGTCTAGAGGGCCCAGTGGGGAGAGGGGTCAGAAGGGGCGGGGGGTGAGGGTTGG--GACTTTGCCTGAGTGGCCACGAAGAGCCTCCTGGGACACCCCTTGCCCCTCATGGCCGCCAACAGGGA-------GCTTTCATTAGTTTTATTGAGGC--------------CTAACCTGA-----------GTCCCTCCCAGATGAAACCGAGTGAGAACGGACTTCCTGGTTTAGCCAGGAAAGCAGTTGGGGCGCAGCCCCAAAGCAGCGAGGGAGCCCGGACACAAGCCTGGGAAGGGCTGGAGGGGGCCCAGGCAGCAACAAGCCTGCAGGGTGGGGACT--GGGTTGGGGGAGGCCTGCTG-----CAA----GGCCAAGGATGGCTGCCCTCTCTAAGAATCTCTCAAAATGCCCACGCTGTCATGACACAGGGCCTGGAACCCAGAGGTGTGGACCTGCGGGCCCAGAGGCTGAAGGAGGCCCCCTGGGCTTGCTGGAACCCTGGCCTCACAGTAAGGAACCAACTGATGGGCCGGGGCGGGGGCTGGGGCTTGGAGGACATGATTCTGGGTCAGGAGCTGGATGGTAGAGACACAC---------------------------------------AGATGCACTGA--CCCCCAGGCCCACTGCACGCTCTCCTTGGCCGTCTGGCGCTACCTTGATTGCCCCAAGACCAGCGTATGGCCCGGCTGCTGCCCATCTCACCC--GGGGAGCGTCTACACCCAAGTGAAGCAGGACAGGGAGATGGGTTTTCTTAGGGGCTCAATTCTGCCATGGAAGTGAACT-----TTTCAAACCC-GAACAACATATTTCTCCTAGGCTGAAACACACACCAAATACTGT---CCC--TCCCCCACCCAAAAGCAG-------CCAGCTTGGGGCTGATGGAGGTGGGGTGGCCCCAGTGGCCCAGAATAGGGGAACGAGCTCTCCTTCAGATCCCATCATCACCGGCCGTGAACAGCTTTGTCCACCACCTGAGTCCTCCAGCTGACCAGAGACCAGAGACTGCAGGCCGGGAGGAAGACCCAAGGCAAGAGCACGGTGGCCTGACCTTGAGTGCCACGGCTTTGTTTTGGCCCAAAGAAAAATTCCATA----------------CCAGAT--AGGAAATGGCTGTGCACACGGGGCGCCACACAGCC----GAGCCCCTGTGACGAATGCCAGCGGCCATCAGTGGGCCTCTGCCTTCACCTGCTCCTGCCTTTCGGTTTCAGTCAAGGCTCTAGAACTTGGGACACACCATCATCACTTCCTCCTCCCTA-------CTCCCGG-CTCCTGGCCCTTCCCT-GTGGTGTGTC------------ATAGAAGAGGGGCACAGCGCTCATCACCTCCGACTAGG------------GTCTGCCCTGCCC-------------ACCTGC-ACCTGGCCCAGCCCTGGGCTCCAGGTGTCCCCAGTCAGCACTGAAAGGTGCTCCCAGGAGGGACG---GCACCCAGCGCAGCT---TGAGCTGTCTCTGCCCTCGTGATCACAAAGCAGTGAAACTGTCCAGAAAATGTCCCTTTTTATTCCATACGCAAATAAGTAGATTCATTTAAAAAAACAACAACCCGGAGGCTGCGACGTCTGCAGAGAGCCCCAGCCTGC------------CTGCTCCTGGAACGGACGATGGGACCCACAGGTCCAGGGTCCTTTCTCCACCAGCACCCGCGAGAGGGGTAGCACAGCCCTCCGGGCCGG---CCTGCTGTCTGGG---------------TCCCAGGAAAGGGACGTTTAGTGTTGGGGGCAGTCT-GTG---GGGACAGTCACCGCTCAG--CCTTGGACAGCCGGTTCGTAGTTTTCCTTTGTTGCGCTGGGCTTGGCCTGAGGGCAGCTGCCCCGGGTGGCCATGGCCGACCGCTCCTCGCTGAGGCCGGGGGGTGGCCGTGGCGCCGGGGGCTGCGCAGCCCAGAGTCTCTGCATGGCCCCCTGTTCGAGTGGGGATCCAGCCTGGCAAATGGGTGGGG------------------------------------CGTCCC----ATTACATTCTAGAGGCGCTCCCCACAGAAGCTGAGGCCCGCCCGGCCGCGGCCTGCGCTCCCGAGGTATCTAGGAGGCCGCAGGAGCGACCATCCCTTCCCTAACGCCCCCTGAGCCCTGCGCCTGCCGCTGAATCGCGCGTCCACACAGGTCCACAGGGTCGTGGGGAGAGGGCCCGGCAGGCGGGGCTCACACCAGGCCAGGCATCTGCGCCCGCAGAAAGGGCAcggaggcggcggccgggaaggcggccagcgggtaggcgagggccccggagaagccgagcagcggtgggggcggcgcgggcgcggcgggcgccagcgggaagggcagggtggccgggggcccagcggcggctgcggcCGGGGGGCTTTCGTGGTAGAGCACCGGCACGCGGACCAGGCGCTGCGCTCCCGGCGGGGACAGGCTGGCCGCCTCCAGCTCGGCTGCCAGCTGCCGCTTCCACTTGTTGCGGCGGTTCTGGAACCAGATCTTAACCTGCGTCTCGGTGAGCTGCAGGGAGGCGGCCAGGCCGGCGCGCTCGGCGCTGCTCAGGTAGCGCTTCAGGTCGAAGGTGGATTCCAGCTGGAAGACCTGGCTGCGGGAGAAGACTGTGCGCGTCTTCTTCTTTCGgccgccgcccacgccaacgccgccgcgtgtctccccagccgccgcagggacctcggccagctccgacgcctcctccgtgccggccgccgggccacgcgccgccagctccgctgcctccCGCTGCACCGCTCCCGGCCCGGGGCCTCGCGGCCAGGCGCCCTCCGCACGGCCCATCTCCTCGCCCGTCTCCGGTGAGTCCCGGTCGCTGGCTGCAGGGGAGAGA-GGGCACCACCGTTGGTTCTAGGGCACTGATTACCAGACTCAATCACTGAGGCCAGCCGTC-CCCACCTTGAGGTCGCTCACAGCCA--------CAAGCAGGAAGAC-CTTCCAGCACAGGGCT--------------------GGGCACCCAGCAGCTCTGGGGATGCACACATTGTCAGAACCGTGGGAGGCGGCCCAGAGACCAGGCAGCAGCTCCAAACCAACACCCCGCAACACACCAACACCCCGCAACACACAAACACAAACGCACACCCATGCCAGAGGACAACAAAGGGATGCAGAGCAAAGA s mm3.chr5 116052297 3004 - 149719773 AAGATATTGGAGAGAAACGGTGGTCTCACA---ATGAGTTCCTCGTCCTGGGTTTAACTGTGCATTTT--GAAAGGGCTGAAAAGTGAGGGGGGCCAGTGACCTGAGCCCCC-TGAGACCTTGACAGTGGAGCCAGCATTTCCACCTGGACCGCTGGGGTGTGGGGTG----------------CCATGGGAAGCACCT-TTGTGTATAC-----AGG-AAAGAGTC----------CCACTGCTTGTGGGAACCTGTGCTGTGC-TAGTGTCTGAGAAGTGCTG--------CCGCTGGCTGCACCC--GATCCTTTCCAGGACAGTCAGACATTTATCC-----------TGAGAACAGAACAAAAACAGCCACA-AAGCC---------ATGGGCACCAAAGTCTGGT------------------GATGGCACAGTG----GAGAGTTGAGGGGGAGAGGGAGAGGTAGGCCTGCCCATTCTGTCTG---------------------GGGACAGCCTGTAGCCTGTGTGCCTGCTGACGGGGGATTCAAGGCTTTCGAAAACTCCATTGAAAAAAATAAAA------CTCACCGAAGTGTATT----GTCTCTCCCAGACAAAGCC-TGCAAAAGATGGTTTACTCAT------GGCAAAGCAGTTCTGAGT--GTCCCAAGG-AGGAAGAATGCCCAGGCTCCAAACTCTGACTGGCT-------------------------------------GACT--GATATGG---AAGGCTGACT-----CAAAGATGGTCAAGGACCAATGTCCCTTCCACACCAATCTCAAAATATACA-ATT-------CTCGGGGC-------------ATATGAACGAGAGCAGCAGCAGATAGAAGAGGTGCTCCATGGAGCACCACCACCTAGGTCTCCATACTGGAAACTC--------------------------GCT-------CTTTATACTGGGGTGGGGTCAAGAAAACACACACTCAC----------------------------------TCCTAAGACAGACTGACTCCCCCAGGCCCCTGGCGCCT-CTTCTAGGCTGTCTGGCGCCACCTTGGGCGCCCCTGGCCC--CGTGTGGACTGATGGCTGCACATCTTCTCT--GTGGGGTGTCTGCTTCCAGGTGGAGCAGGG-AGGAAGACAGGTTTTCCAAGGTCCTCTG----------GGAGTGACCAGATCCCTTCAAATTTGGAATGTCCTCTCCCAATTAGGTTCAAAAGCACACCAAATAAAGCA--CCA--CTCCACACCTGTAGGTAGGAACAAGTCAGTATGGGGGCAATGGAGAT-GTGtgacccaggtggtccaacactgttcaagcaacttcccctgagagcaca---------------------------------cagagggttccaa-tgaccagggg-----------aggcaggagcaagcaccc------------cagtgccctg--ctgaagagccagagctttgtttcagatcaaagaatttcgacacacatcctgctgtgtgtcccaagtgcaggtaagggcAGCG----------GCCACACAGCCTCATGAACTCCCATGACGGA-GTTGGTGGC---CAGAGAGCC-CTACCTTCATCTGC-CATGCCTTT-GGTTTCAGTCC------------------TACAACAG--TCATCTTTCCATCTCTATTCCTTCCTCCTGGACCCCTAAGACTTCCCCAGAAGTGTAGCTGGGCCTCTC--AGTCACAAGCAGAGTAAAATTTAGGATCATAAACCAGGAGGGTGGCTCCAGCCTGACTTGCCC--------------------ACCTACCCCGGGGCAGCCTTTCCAAAGTCCCTAGCCAGGTTTGGGAG---------GGAAGTACC-ACACACTCAGGCCTGCTACAAGAAGCGGCTCTGTCCTAGCGACCACACAGCTGCGAGTCCATCAAGAAAACGTCCCTTTTTATTCCATATGCAAAGAAGTAGATTTATCACAGAAAAAAAAAA--AAAAGTCTT-GTCAAGCCAAGAGAACCAAGGCCGCC-AAGAGAGAAGCCCTCTTCGGAAAAG---------------AGGCCCAAGATGAGTTGTCC-CAAGGCCC---GCAGCACTCTGTACTGTCCCTTGGAAGGGGCCCCTGATGTCTGGGTTCCTGCAAGATCCCTCCCGAGAAAAGGACAATGTGAATTAGGGCCAGGAT-GCCTC-GGGACAGTCGCCATACGGTTCCTCGGCCAGCCCATTCCAAGTGTCCGTTTGCTGACTCGG----AGCC----GGCATCTGCTCAG-----------------------CACT---------------CCGTGCCGGCGAGAGCT---------AGCGCATCGCCGCGGCTTTCCATCGGAACGGGTCTCCAGTCCTGCAGCTGGCTGCGAGTCCCGGCTGCCGCCG--------------------CTGTCC----GGTACACTGTAGAGCAGCTGCCCACGGAGACGGCCGCTCGAGGGACTGCG-------------AGGTGCGCGG-----------------CGCCTTCCCCCAACCGCCTCCT--------------------------------------------------ACATGGAGGGCGCC----------GGCTCACACTAGCCCCGGCATCTGCGCGCGAAGGAAGGGCACCGAGGCGGCGGCAGGGAAGGCGGCAAGCGGGTAAGCAAGCGCGCCCGAGAAACCAAGCAGCGGCGGCGGCGGTGCGGGTGCGGGCGGCGCCAGCGGGAAAGGCAg------cgcgggccccgcg------gcggccgggggACTCTCGTGGTAGAGCACCGGCACGCGGACCAGGCGCTGCGCACCCGGCGGGGACAGGCTGGCCGCCTCCAGCTCCGCTGCCAGCTGCCGCTTCCACTTGTTGCGGCGGTTCTGAAACCAGATCTTGACCTGCGTCTCCGTGAGCTGCAGCGAGGCGGCGAGGCCCGCGCGCTCTGCGCTGCTCAGGTAGCGCTTCAGATCGAAAGTGGACTCGAGCTGGAAGACCTGGCTGCGCGAGAAGACCGTGCGCGTCTTCTTCctgcggccaccg--cgcgcctcccctgtcgc----cgccgccgccaccgctggagcctcggccaactccgccgcctcctccccgccggtcgccgGGCCCTGCGTCGTCA---------CCTCCCGCGGAACGGTTCCCGGCCCGGGGCACCGCGGCCAGGCGCTCTCTGCGCGGCCCATCTCCTCGCCGGTCTCCGGAGAGTCCCGGTCGCTTGCTGCAGGGGAGAAACGGGCATAGTGGCGGGTTCTAAGGGTCTGCCTTTAGG----AGTCACTGAGACTGGCTTCCTCCCACCTTCAAATCCTCCTCACTCA-AACGCTACAAACTGGGAAACACGCCCCGCGTACGGGT-----------------TGCGGGGGCGGGA-------GGGGGTTGGGGTGCCGGCAGGAAAGTAG---------CAGAGGCCA------------AAAATGAAGCCCAGGACC-------TGGGCCGCAGCAAACACGTGGCAGCGCACACCC-----------------AGAGA---AGGACAGAGA s rn2.chr14 77823153 3072 + 107821284 AAAAGACTGGAATAAAATGGTGGTCCCACA---ATGATTTCCTAGTGCTGAGTCTAACTATGCTTTTT-TGAAAGGGCTGGGAAGTGATGAGG-CTAGTGACCTGAGCCCCCCTGAGACCTTGGCAGCAGGGTCAGCATTTCCACCTGGACCACTGGGGTGTAGGGTGTGTGGATAGAGTTGTGCCATGAGAAGCACCCATTGTGTATAC-----AGGGAAAGAGTCAGGGAGGCCATCACTGCT-GCAGGAACCTGTGTTGTGCCTGGGGTCTGCGAAGTACCGAAGTACCACCGCTGGCTGCACCC--GATCCTTTCCAGGATGGGCAGGCATTTATC------------TGAGAACAGTGCAA---CAGCCACAGAAGCC---------ATGGGCTCCAAAGTCTGGG------------------GGTGGCATAGTG----GAGAGGTGAGA---AGAGGAAGATGTAGGCCTGCTCATTCTGTCTG---------------------GGGACAGCCTGTAGCCTGTGTGGCTGCTGACTGGGG-CCCAAGGCTTTTGAAAACTCCTTTGAAAAGAATTAAAACTCATCTCATCGAAGTGTCTTTGTAGTCTCTTCCAGACAAAGCC-AGTAGAAGCTGGCTTACTCAT------GGCAAAGTAGTTCAGCGT--GTCCCAAGGCAGGAAGAATGCCCGGGCTCCAAACTCTGATTGGCT-------------------------------------GACACAGAGATGGGACAAGGCTGATGGCTGACAGAGATGGTCAAGGACCAATGTCCCTTCCACATCAATCTCAAAATACACACATC-------CTCTGGGT-------------------------------------------GATGCCCCACGAAGCACTACCACCTAGGTCTCCGTACTGGAAACCCA-------------------------GCT-------CTTTGTAATAGGGTGGGGTCGAGAGAacacacacacacacacacacacacacacacacacacacacacacacTCCTAAGATGGACTGACTCCCCCAGGCCCCTGGCGCCTTCTCCTAGGCTGTCTGGCGCCACCTTGGGCGCCCCTGGCCC--CCTGTGGACTGATGGCTGCACATCTCCACTTGGGGGGGGGTCTGCTTCCAGGTGGAGTAGGG-AGGGAGACAGGTTTTCCAAGGTCCTCTGTTAAGAC-TGGGAGTGACCTGACCCCTTCAAATTTGGAATGCCCTCCCCCAAATAGGCTCAAAAGTCCACCAAATGAAGTAGACCAAATGCCTCACCTGTAGGCAGAGGCAC-TCAGTTTGGGGACAATGGAGAT-GTGTGACCCTGGTGGTCCA-CACTGTTCAAGCAACTTCTTCTGAGATCACA---------------------------------CAGAGGGTGCCAA-TGACCAGGGG-----------AGGCAGGAGCAAGAACCC------------TGGTGCCC--------------AGAGCTTTGATTTAGATCAAAGAATTTTTACACACATCCTGCTGTGTGCCCCAAGTGCAGGTAAGGGCAGTG----------GCCACACAGCCTCATGAACTCTCACGGTTAA-GTTGGTGGC---CAGAGAGCC-CTACCTTCATCTGC-CATGGCTTT-GGTTTCAGTCC-----CCAAATCTC----TACAACAT--ACGTCTTTACATCTCTA-------CGCCTGGACCCCTAAGCCTTCCATGGAAGTGTAGC-GGGCCTCCCCAACACACAAGGAGAGTAAAATTTAGAACCATTGACCAGGAGGGTGGCTTCAGTCTGACCCTCCCCTACACCACCTCTATCTACCACCTACCCCAGGGCTGCCTTCCCAAAGTCCCTGGCCAGCTTTGGGAG---------AGAAGTACCCACTCACTCAGGCCTGCTACAAGCAGCAGCTCCGCTCTAGCGACCACACAGCTGCGAGTCCATCCAGAAAACGTCCCTTTTTATTCCATATGCAAAGAAGTAGATTCATCACAGAAAAAAAAAA------GTCTTCATCAAGCCAAGAGAACCAAGGCCACCCAAGAGTGAAACCC---------------------------------AAGATCAGTTGTCC-CAAGGCCCCCCGCGGCTCTCTGTATTGTCCCTTGGAAGGG----------------TTCCTGCGAGGTCCCTCCTGAGAAAAGGACATTCTGAGTTAGGGGCAAGATTGCCTCAGGGATAGTCGCCATGCGGTCCCTTGGCCAGCCCACTCCAAGTGTCCGTTTGCTGCTGCGG----AGCC----CGCAGCTGCTCAG-----------------------CACT---------------CGGTGCCGGC--------------------------CACCGCTTTCTATTGGAACGGGTCTTCAGTCCTGCAGCTAGCTGAGAGTCCCCGCTGCCGCCGTCcggtacactcagtacactcggtacactgggtacactcTGGAGCAGCTGCCCACGGAGACGGTCGCCCGAGGAACTGCG-----------TGAGGCGCATGG-----------------CGCCTTCCTCTCACCGCCTCCT---CCCGGCGCCC-----------------------------------CTGCATGGAGGGCGCC----------GGCTCACACTAGCCCCGGCATCTGCGCGCGAAGGAAGGGCACCGAGGCGGCGGCGGGGAAGGCGGCCAGCGGGTAGGCAAGCGCGCCCGAGAAACCGAGCAGCGGCGGCGGCGGCGCGGGTGCAGGCGGAGCCAGCGGGAAGGGCAG------CGTGGGCCCCGTG------GCGGCCGGGGGACTCTCGTGGTAGAGCACCGGCACGCGGACCAGGCGCTGCGCGCCGGGCGGGGACAGGCTAGCCGCCTCCAGCTCGGCCGCCAGCTGCCGCTTCCACTTGTTGCGGCGGTTCTGAAACCAGATCTTGACCTGCGTCTCCGTGAGTTGCAGCGAGGCGGCGAGGCCTGCGCGCTCCGCGCTGCTCAGGTAGCGTTTCAGATCGAAAGTGGACTCGAGCTGGAAGACCTGGCTGCGCGAGAAGACCGTGCGCGTCTTCTTCctgcgaccgccg--cgtgcctcccctgccgc----agcggctgccaccgccggagcctcggccaactccgccgcttcctccccgccgGCAGCCGGGCCCTGCGTCGTCA---------CCTCCCGCGGAACGGCTCCCGGCCCCGGGCACCGCGGCCAGGCGCTCTCTGCGCGGCCCATATCCTCGCCGGTCTCCGGAGAGTCCCGGTCGCTTGCTGCAGGGGAGAAATAGGCATAGTGGTGGGCTCTAAGGGTC--------AG----AGTCACTGAGACTGGCCTCCTCCCACCTCCAAATCCTCCTCACCCACAATGTTACAAGCTGGCAAATATTCCCCGCGTAGGAGTTGGGGAAAATCCACCACTGCGGGGGCGGGG-------GGGGGTGTGG--------AGGAAAGTAG---------CAGAGGCCG------------AAGGTGAAACCC--------------GGGCTGTGGCAAACACGTGGCAGCACACACCC-----------------AGAGA---AGGACACAGA a score=285.000000 s hg15.chrUn_random 555827 85 + 611077 AAA-----GAAACAAAAATACTACACAAGAAAAGCAGGCTGACCCCAGTGAGCACTCCCCACTCCCAGCTGCACCACGGGCGGCCCGGAA---- s mm3.chr5 116055301 87 - 149719773 AAATTCTCGAAAGAAAAAGGCTAATCCA-AAAGACAAACTGACATCTGAGACTGCCCCTGGCT--CAGCTCTACC----TCAGCCCCCAACCCA a score=154230.000000 s hg15.chrUn_random 555912 2673 + 611077 ----AAACACACAAACCTCCCGCAGAAGTCCCGGGACAAGAGGAAAGATGTCCTTCCGAGAAATGTTCACACCGAAAAACAAGCACAGGACACCCCCTGCCACCTGGCATCCAGCCCCACGCCAAGCTCCCCAGAAGGAGGAATGAAGAGTTCACAGGCCTCTTCCCGCGCCCTCTGC----CCGCTTGCACAGAAACATTCCATAGTAGGAGGACAAACCAATGCAAAGGATCCCCAAAAGAGAACTCCCATCAGGTGAGGCTGTCACCCCCACACCACATACTCCTGTAGCCCTGACCCAG-TGTCCACA-AGGCAAGTCCACACCAGCCACAATCAT--GCTCAAAGGGAACAC--GGGCACATGCCACTCTAAGCAACATGCAGCAGCTGAGTCCTGCCCCAAACACTTTCAAGACTGGAGGTTCAGCCTCATGGGTTTGGGCTGAAACCAGAAGCTCACAGGCGGTGTCTGAGTTCATGTTCCAAGTACCAAGCTCCCCTACTCATCTCCTAGGAACAAGAAGAGGCCCACAGGCTGGCAAGGGATGATGTCAGGTTAAAGAGGCCAGCCGGGACCCAGAAGCACTTGCCCAGATTGAAGAGGGCAGCAGCCTCCC----ACTGCAGGGCTCTGGAGGCTGACTCGGACCCG-CTGCTTTTCTGCCTTGGTCTGGAGCCTCCCGTGCAAAGGGCAGGCCCAGGTTGACAGGTTAGA----GGTGGAGGCAGAGTTTGGCCTGGCCCTGGGCCCCTGGAAGGCTGTGCACTCGGCCGGGTGTGTGCCTGCAGTGTATTTGCAGCATTTGCACGCTCATGCAAGGGGTGCGCACACTGGTGGGCTTCTGTGCGTGGTTCCAGCT---CTGTGCCTCATGCCCAAGGAGTGTGCACATCCC---------------ACTCACGCCCGTGGCCAATCCCCATGGTGTGTGCCCTCACAGCACCCACAGGGGAGTCAGGCAGCAGGTTGTGGTGCATGCTACTAGATC--TGGGGAGTCCCTGC---CTCCCCCCAATACCCCAAACTCACAGAG----GCCCATGTGCTGCCACAAGGCACTAGGCTGACTTGCCAGCTC--------CAGTGAGGAAGTGGGACCCTAACCCGCATGGCACGAAATAAGG----GGGAGCC-----------------GCCTCTGCAGGGGTGCCACCTGGGCTGCAGGAGGGGATGCACCCCAGGGATGAGTGGAGAACAAATTTCACCCTGAGAAACCCTTTCCATAGTCTCCCCCAGAAGGGCACTAGACAGAGTCGCTCGATTTCTGGGAAACCACGGAAGCCCTGCTCAAGTCTACGTGAAGGGGGTGGGGGCCTAGACTTCCTGAGTGTGGGTGCCGAGATGTGGGGGCTTTTGCAAAGGATCACTCCACGACATGGAAAGGGT---TATCTAACAAGTGAGTGAGGGTCGTAGGCCACTTACTCCCCAGCACACACTAATATTCATACAGAGGACAGCATGGATCCCAGAGCCGGAGCCTGCAGAGGGCCCACGTCCTCAGCTGGCCTCAAGGTCCA---AAGGCTGTGTTGGGGGTGG-GGGGCTGGCTAA----GCCAGGGCTTGGGGGGTTGGACTGGCTTTCCTGGCCTTCCTCCCAGGGGT--CTTCCTAAAGGGCAGGTACAAAAGGGAGGCAGCGACCCTGGAACCCTGGGGAGGGGAAGCAGAACTAAGGGGTCAGATACCCAAGCAAG-GGGGCAAAGGGGTTCTGGGGTTGA-GAA-CCCCCAGCCCCAGTCTC-AAGCCCTCAGCAGGGAACAAAGG-CAAGGA-GGGGGAGGGGCAGAAAAAGAAGAGAGAGGGGTTGGACTGGGGGCCTCAGAACAGGCTCCCTTCTTGCCTGGCACAGCCCATGCCCCTCA-AGGACCAAGAGGGAGACCCAGGCCCCTGCCCCAGGCTGT--CT--GCAGCGGGCACAGAGGAAACAGGACTCTGGGGGG-------GCACAGCTGCCATGTTAGATGGCTCCCCTCCCCGGCCCCACCCCCACAACACTGCACCCTCTGCTCAATGCCCCCTTTTATTTTTCCACGTCTGATGCTACTTTGtctccctttccctccatctcttcctcctcttttctctctcggatcactcttgggtttctttttcctgcatcttcccctccccccaccccattctctctcccgcagcacattcctttcttcctccatcctcccattttctttctcagcctctttcgccttctcctgtatctttccctatcctctttcactctcctttcttttttctttggcctcctGTTGTCC---CCTGTCCCCAGCCTCCCTGGGACCGGAGGAGCCCGGCAATGGGTGAAGCTATGGCCTGCAAAACCTCCTCGTTAGCGGAGCTCCTGCCCCAGAGGGTGGGCCTCCAAACCAGCCCAACCAGGGGCTCCTGGGGGCCCCACAAGGCCCAGACGCCGTTCCACAGAAGGGAGAGGATGGCCCAGAACGGGCGGCGAC-GAGCCCGAAGTCCCCCAGCAAATGCGCAGGGAGGAAGTCGGGCCCCACCGCCTGACCCACCC--TCCCCGCGCCCTCACTCACTGTCAGGACTGAGGCCGCCTCCATAGCCACCGTGCGCCCGTGGGTACCAGCGCGCTGCGCCTCCGCAGCCCAGAGCGAAgggcggcccgggaccggggggcggccgaggaccgaggcccagcgcgcccggcccgagcagcgcacgggcccgcgcctccccgccgggcccggtgcccgcg s mm3.chr5 116055388 1988 - 149719773 CCGCCAACTCACAAAAGGCTGGCAGAGG-ACCGGGACAAAAGAAAGGATGTCCTTCAAAGTTATGTACACACAGAGA--------------------------CTGACATACAACCTAACCGCCAG---------------------GGGC---TGAGACCTCCCCATCACACAC-GTGGAGCAGACATCAAGGAAACAACTCTTAGGAG------AAACAAATGCAC---ATTCCCCAGAGAAA--TCCCACCGGGTGACATTGGCAC---------------------AACCCCGACCCAGATCCCCTCAGAGGCAGGCCCTCTGCAGCAGCAA-AATATGCTCCAAGAGACCAA--GGAGTAAGGCTGTTCTACCAATCA--CTGCATTCCTACCCTGCCCCAACCATCTCCTACGCTTGGGGT-------------CTT---------------GCCCACAGAGGACCTTTGGGCTCATGCTCCAAGTCCCAGATTC----------------------------------AGGGCGTACAAGGGATGTCACCAGGTTAAATAAGTT--------CCCGTGGGCTCCCACT--------------------TCTCCTCTAGACATCTGGGTCCATGAAACCAATTCAGGCTGGTCTGTCCTTCTGCCT----------------------------------GACCGATGGATCAGA----GGTCAAGGTGGGTTTTGGCCC-----------------AGGTTATGC-CTCAGTA-----------------------------------------------------------CAGTGGACTT------GTGCTTACAGCTAAACTCCGCCTGGTTTCCTTGAAA-----GCATCCC---------------------------CCTCAGTGCCCATGCAATGTCGCCT-------------------------AGCAGGATGGTGTGTATGCAGCCAGACCATAGGGGAGGTCCTACAAAGACACCCAAAGCCCCTACACTC--GGAGGTCTGTCCATGTGTTGCCATAAAGTGCTAATCTGACTCACCTGCTCGCTTGACTCAACAGGAACAGAGAACTCTAACCCGCATGGCACGAAATAAGGCAAAAGG-----CCggggtggggtgggggtgggggtggtggtgACTATTGGACTACAGGTGAGGATG--GCCCAACTAAAAG-GGAGAATAAAATGCGCCCTGCAAGAGCCTCCTCACT------------------------------------------GGATACTACTGAC-CCCTGTTTAAGCTTATGTAAAGAAGG--------CAGGCATTCCAAACCTGGGC---------TGGGAGACTT------GTCCTACTCCATACCAGGAGTGGGGTGAGTACCTAATAGAAAAGAACGGGCCCCAGGCCACCTCCT---------ACCCCAAAGCTTATACACAGA-----------------GCCTGGGTGGGCA---------------------CCCTTTAGTTATATATAAGTCTGTGTGTTTAGGGACCCGGCTGGCTCAAGGGGCTGGGGTGAGGAAGGTTGAAATACCCTTCTAG-------TCTCAAGGGTTGCTCTCTAATGAGCAGGT-CCTAAGAGAGGTTGAGGTCTGGACCCTCTGGAGACAGGCAG------TCAGAGTCAGGATGTCCAGGCCAGAGGGGTAAGTGGGTTCTGGGACTGA-GAAGCCCCCACCCCCATTCTCTGAGCCCTCTGCAGGAAACAAAGGCCAAAGA-GGGGGAGGGGCAAGAAAAGAAGAGAGGGG---TGGGATGGACCCTTCAGAGTGGGCTCC-----TACCAGCCTCAGCCTTTGGGCCTGAGAAGACCCAAC-GCAGGCTCAGGCCC--AGCCCATGGTCTTACTGCGCAGCAGG----GAGGGCAAAGGATACTTTGGGG-------TTGCAATTGCTATAGAAGAAGGCCTCCCATCCAG------CCTCCATAGCTGTGGTCTCTCAGCTCTG---CCCCTTTTATTT---------TAGTGC----TTGACCCCCGCGGCCTCC-------CCTCCTCT------------GCCACCT------TTCCTCTTCCTTCA-CTTCCCTTTCACCTTCGATGTT-----TCTCCAAACACACTCTTTCC-----------------------------CCT---------TCTC----ATCTTTCCGAGGCCTATTTCACTCTCCTC-------TCCGAATTTT-GTGTTCTTGGG-CCTGATCCTAGCCTT-------------------------------AGCAGCTTCCTACA---------------TGCAGTGCCATCCCC-------AGTCTCCAACAATTGCCCATCCA--------AGGGGATCTCATACCACCCAGGCCCCAGTACACAGGAAGACTAGG--AGCTC-------------ACTAAGCCCGAAGTCACCAAAAGAATGCATAGGGAGGGAGCAGAGCCCTGAC-CATTGCCCACCCCTTCCCCGCAACCTCACTCACTGTCAGGACTTAGACCACCTCCGTAGCCGCCGTGCACCCGTGGGTACCACCGCGTTGTACCTCCGCAGCCGAG------------------------------------------------------------------------------------------------------CGCG s rn2.chr14 77826347 2016 + 107821284 CCACGATCTCACAAAAGGCTGGCAGAGG-CCCGGGACAAAAGAAACGATGTCCTTCGAAGTTATGTACACACAGAGA--------------------------CTGACATTCAACCTATCAGCTAG---------------------GAGT---CAAGCCCTCCCCATCACGCACCGGGGAGCAGACACTAAGAAAAGAACTCTTAGGAG------ACATGAATGCAC---ATTCCCTGAAGAAA--CACTGCCGGGTCACACTGGCAC---------------------AACCCTGACCCAGGCACCCTCAGAGGGAGGCCCTCTGCAGCAGCAA-AGT--GCAGCAGCAAAGCTACGGAAGGAAGGCTGTTCTATACACCA--CAGCATCCCTACCCTGCCCCAAGCATCTCCTACAC--------------------ATT---------------GCCCACAGAGGACCTCTGGGCTCATGCTCCAAGTCCCAAGCTC----------------------------------AGGGCTGACAAGGGATCTCACCAGGTTAAAGAGGCT--------CCTATGGGCTCCTGGT--------------------TCTCCTCTAGACATCCAGGCCCATGAAACCGATTCAGGCCAGCCTGTCCCTCTGCCT----------------------------------GACTAATGGATCAGACAGTGGTCAAGGTGGATTTTGGCCC-----------------AGGTTATGC-CTCAGCA-----------------------------------------------------------CGGTGGACTT------GTATGTACAGCTAAACTCTGCCAGGTTTCCTTGAAA-----GCATCCCGAATTGTGCTCAGCCTCCATGTTCTGTGCTCAATGCCCATGCAAAGTCACCT-------------------------AGCGGGGTGGTATTTATGTAGCCAGATCAGCGGGGAGGTCCCAC-----------AAGCCCCTACAGTCATGGAG----GTCCATGTGTTGCCACAAAGTGCTAATCTGACTCACCTGCTCGCCTGACTCACCTGGAACAGAGAACTCTAACCCGCATGGCACGAAATAAAG----AGGAGCCACCTCTGTGGGA----------------GGTGACCAGTGGACTACAGGTGAGGATG--GCCCAAGTAGAAG-GGAGAATAAAATG-GCCCCGCACGAGCCT-TTCATTG---------------------------------GATTTC-AGGATACTACTGGA-CTCTGTTTAAGTTTATGTAAAGAAGA--------CAGACATTCCAAACATAGGC---------TGGGAGACTT------GTCCTACTCTATACCAGGAAGGGGGTGGGTAGATAACAGAAAAGAAT-GGTCCCAGGCCACATTCT---------ACACCAAAGCTTACATACAGA------TGGCTCCCGGCGCCTCGGTGGGCA---------------------ATCTTTAGTTTTGTAGAAGTCTGTGTGTTTAGGGG-CAGGCTGGCAAAAGGGGCTGAGGTGAGGAAGGTTAAAATATGCTTCTAG-------TCTCCAGGGTTGCTCTCTAAAGAGCAGCT-CCTAAGAGAGG-TGAGGTCTGGACCCTCTGAAAACAGACAG------TCAGAGTCAGGATGTCCAGTCTAGAGGGGTAAGTGCGTTTTGGGACTGAGGAAGCCCACACCCCTATTCTCTAAACCCGCTATAGGAAACAAAGGCCAAGGAGGGGGGAGGGGCAAGAAATGAAGAGAGGGG---TGGGATGGACCCTTCGGAGTGGGCTCC-----TACCAACCTCAGTCTCTGGGCCTGAGAAGACCCAAAGGAAGGCCCAGGGCC--AGCCCAGGCTCATACT--GCAGCAGA----GAAAGCAAAGGATATTTTGGGGGTCGCAATCGCAATCGCTAT---AGAAGGTCTCCCATCCAG------CCTCCACAACTGTGGCCCCTCAGTTCAG--CCCCCTTTTATTT---------TAGTGC----TTGACCCC-----ACTCC-------CCTCCTTT------------GCCACTC------TTCCTCTTCCCACA-CTTCTCTTTCACCTTCCTTGTT-----TCTCTCAACGCACTCCCTCA-----------------------------CCTTCCTCCCTCTCTC----ATCTTCCGGAGGCCTATTTCGCTCTCCTCTCTCCTGTCCGAATTTTCGTGTTCTCAAGCCCTAATCCGCGCCTT-------------------------------AGTTGCTTCCCGCA---------------TGCAGCGCCATTCCT-------GGTCTCCCGCGCTGGCGT-TCCA--------TAGGGGTCTCATACCACCCAGATCCCGGTACACAGGAAGACTAGG--GACTC-------------AC-AAGGCCGGTGTCACCAACAGAATGCGCAGAGAGGGAGCAGAGTCCTGCC-CATTGCCCACCCCTTTCCCGCACCCTCACTCACTGTCAGGACTCAGACCACCTCCGTAGCCGCCCTGCGCCCGTGGGTACCACCGCGTCGCGCCTCCGCAGCCGAG------------------------------------------------------------------------------------------------------AGCG a score=130556.000000 s hg15.chrUn_random 558589 754 + 611077 ACTgtcgccgccgctgtagccgtcgccgccgcgcctgctcggcgtcctcgtcttcggggtcgtcgtcgtcctcctcctcgtcctcccggctgccgtcgccCTGGGTCGCGCGCCCTGCGCCCTTGGCCTCGGCCGCCAGCAGGTTCTCGATGAGGAAGGAGGAggcgcgggccggcgtggcgcgcccgggcTCCGTCAGCTCGTCAGGCATCGCGGCCGCGGGCTTCTCGGGCTCGGCCGGGCTCCT--CGGTCCCCGCTGG---------------------------------GGATGGTggcgcgcggctcccgggcgcacgcgcgggccggcccTGGAG--CTGCTACCCGGACCGCTGGCGTCGGGCCCCGCAGGGCAGGCGGCGGCCTccgcgccgggctgggctgggccgggccgggAGCGAGTGCGCGCCGACAGCTGATCGGGCAGCCGCCTGGCTCGCCTTTCAGGTCGCCGTTCTGGTCGCCGCCGGGGC-GGCCTCACTGGGGGCGGGGAGGGGGAGGGGCCAGCAGGGGCGGGGGGTCGCGGGCTGGGCCGGGAGGGCGGCCCGCTGAGCCCCGAGGACGCTGCGCCGGCCCCGAGCGCGGCCGCTGCCGGGAGACGCTGCCCAGAC---CTGAgcgcgcgggcagcggcgcagccgagggcgggcggccccgggcgcaggcggggggtcgcgccgggTCCGATCCCGCGTGATCAGTTCCCCCGTCCCGCGCC-----ACCCGCTCCG-----TGGG----GGCGGGGCCTGGGCTGAGCGGCCACCCATTGGCT s mm3.chr5 116057476 768 - 149719773 GCTgtcgccgccgctgtagtcgtcgtcgc---gcctgctccggatcctcgtcctcggggtcgtcgtcgtcctcttcctcttcctcgcggacgccatcgccCTGGGTTGAGCGCCCCGCGCCCTTGGCCTCGGCTGCTAGCAGGTTCTCGATGAGGAAGGAGGAGGCGCGAGCTGGTGTGGCGCGCCCGGGCTCGGTCAGCTCATCCGGCATCGCGGCCGCGGGCCCGTCGGGCAAGGCTGGGATCCTGGGGGTCCCTGGTTGCCTGGGGCGCAGCTGCTCTTCCCGGCCCCGTTTGGATAGTGGCGAACGGCCGCCTGGCGCACGCGCGGCCTGGCCCTGGAGAGCCGCTGCCCGGAGTGAGGGCGTCGGGCTCCACGAGGCGGGCGTCGGCTTCTGTGCCGGGCTGGGCTGGG------CGGGAGCGGGTGCGCGCGGACGGCCGTTCCCGCAGCAGCCTCCCTCGCGTTTCTCCGAGCGGTTCAGGTCGCCGCCCCGGCTGGCCTCACGGGAGGGG--GAgggggcggtgc---cgggggcggggcggcgcgAGTTTCGTAG------------GCTCAGCCCCAACGAC-CCGCTGCAGCCCGGAGAGAAGCCATTGCC-GGAGATGCTGCCCGGCCGGACTCTGCGCGCAGGTGGTGGCAGGGCCCAGGGCAGGAGACCC------------GGTGGTCCTG-GGGGTACGACCCCGCGAGATGCGTTCCGGCGCCCCCCACCCCGGTACCCGCGCCAGGGAGTGGGAGAAGGCGGGGCCTCGGCTGGGAGGTCGACCATTGGCT s rn2.chr14 77828451 772 + 107821284 gctgtcgccgccgctgtagtcgtcgtcgtcgggcctgctccggatcctcgtcctcagggtcgtcgtcgtcttcctcctcttcctcgcggacgccatcgccCTGGGCTGCGCGCCCCGAGCCCTTGGCCTCGGCTGCCAGCAGGTTCTCTATGAGGAAGGAGGAGGCGCGAGCCGGCGTGGCACGCCCGGGCTCGGTCAGCTCATCCGGCATCGCGGCCGCGGGCCCGTCGGGCAAGGCTGGGATCCTGGGGGTCCCTGGTTGCCCGGGGCGCAGCCGCTCTACCCAGTCCCGCTGGGATTGTGAAGAGCGGTCGCCTAGCGCACGCGCGGCCCGGCCCTGGAGAACCGCTGCCCGGAGAGAGGGCGTCGGGCTCCACGAGGCGGGTGTCAGCTTCTGTGCTGTTCTAGGCTGGG------CGGGAGCGGGTGCGCGCGGACGGCCGTTCCCGCAGCAGCCTCGCTCGCCTTTCTCGGAGCGACTCAGGTCAccgcccgggccggcctccgggggaggggtgggggggcgtggc---cgggggcgtggcggcgcggggTCTGTAG------------GCTCAGCCCCAAGGAC-CCGCTGCAGCCCGGAGAGAAGCCATTGCA-GGAGACGCCGCCCGGCCGGATTCTGTGCGCAGGCGGCGGCGCGGCCCAGGGCAGGCGGCCC------------GGTGGTCGCG-CGGGGACGACCCCGCGAGATGCGTGCCGGCGCCCCCACCCCCTGCACCCGCTCCC-GGAGTGGGAGAGGGCGGGGCCTCGGCTGGGAGGTCGACCATTGGTT a score=69781.000000 s hg15.chrUn_random 559343 915 + 611077 GTGGGGCCCCGATGAGGAACGGGCTGGCCAATCACCGTCCGGCCAGAGCCGTAATTACCCCGCTGCGAGGAGGGTGTTGGACCGACCGTGAGTAACtgtgtgtgtgcgcgcgcgtggtgtgtgcacgagtgtgcgtttgaatggctgtgtgtgtgtgGAGGGCGGCGTGGAGACCCCGGGGCTCCCAAGAAACTGCAAGAGGCTGGGCCACATTT-------TTTTATTTAAGACTTTGTGTGTAATTTAAAAATGGGAACACTGCC-AAAACAGGACTGC-GAAATGTGGCATATCTTAATATTTGCACTTAAGGAAAGATGCTTTCAATGCCAACTGTAGTTCGGTA----GAACTCT-TCAGTTCCCGGGCTCGGTACCAGTATGTAAGGAAGTGCAA--CCACAGGGCTCCGCTGGCAGCCCGCTCGATGTTACCAAGCAGGTCTTCACCGCGCCAGCACCCCCACCGCCCG---------CTCCAGGGGAAGCCAGGGCCTTAGAAGGGGGTGGGAGCTTTTGGCCCAGCCTCTGCCCTGGGC-GAAGGTCTTGGGGGCAGGCCCCTTCCCTCGTTGTGCCTCCGTTTCTTCGCTCTAAAGGGGTGGGGAGGTCCTCCCATATCTGCAGCGGGAAGTTCG-GGAACATAACGCACCCT--------------GGAGCTGT--CTCCGTTCCGGCGTCGACTTCAGACTTACCTACATTAGGTCACTGC-GCGGACGCGCGGGTTAAGCCGGCTTCACCCGATGCGAGTTATTTCGCAGAGATACATCCATCCTCCCAGGGCCAGCCCCGGGCCCCTCTCCACCCGAGTACCGCCCGCGTTCC---CGGAGGTGACCGCAGGCCTGGGGCTTCCGCTttgtttaattcttccaaaaaagcacggtggaggg----agcatcgcccccatttttcagcggagaaaactgacgggagaagagag s mm3.chr5 116058305 788 - 149719773 cGGGAGC------------------------------------------------------------------GTGTCGGAAC--CCGCA-----------------GAACGCTCGGTTTGTGCGTGAGTCCCTG------TGACTGTGTATTTGCG------CGCGGGT-----------------AAGGACTATTGCCGACTGGGCCGCAGTCTTTTTCTTTTTTTTTAAGACCTCGCGTGTAATTT-AAAACGGGGATTCTGCC-AAAACAAGTTTGCAGAGACGCAGCATGTTTTAACTCTTACGCGTAACGAAATATGCTCTTGGTGCCATC-GCGCTGCGATG----GAATGCTCTCATATCCCGGGCTCAGTTTCGGTGTGTAAAGAGAGTCAAGCCCGAAGGTGCCCCATGGTGTCACGCTGGGTAG----GAACAGATTACATTTGCTCTGGCACCTCCATTGCCCGGCCTTCTCACTC---------------TCTTTCAGGCTGGTAAGAGCTTCGTGCCTAGCCACTGTGCGGGACTGCAGGTCTTGAGGA-----ACAATTCCTCTTTCTGCCTC----TCTTGCCCTGCACAAAGT--GAATTTTCTTCCCCCGCTTCAGGAGCAAGGCCGCAGAGGGTAACCCAGACTTCGCTGAGACCAACGGAGCTGTGATCCACTTCCAACAGGAATAGGGGGACAGCCTA------GTCACTGA-GCGGA--------------ACGCTTCACTGGATGCGGGTTATCAC-GGAAGGCCCATCTAGCTGCTCAGTGCGGGTCAC-AGACAGTGCGTAAAGAAGTGTGTCCCACTGTCCAGGAGAAGGCAACTGCAGGCCCGGAGC--CCACTTTGTTTAA-TCTCCCCAACAAGAGAAATAGAGGGAAATAGAGTCA-CCCTATACTTCAAAGGGAAAAACTAATGTGAAAAGAGAG s rn2.chr14 77829284 771 + 107821284 CCGGAGC------------------------------------------------------------------GTGTCGGAAC--CCACG-----------------GAACGCGCGGTTTGTGCGTGAGTCCGTG------TGACTGTGTATTTGCG------CGCGTGT-----------------AAGAACTACTGCGGACTGGGCCACAGTC-------TTTTTTTTAAGACCCCGCATGTAATTT-AAAAGGGGGATTCTGCCAAAAACAAGTTTGCAGAAATGCAGCATGTTTTAACACTTACGCGGAACGAAATAAGCTCATGGTGGCTTC-GCGGTGCAATGGTATGTATGCTCTTGTTTCCCGGGCCCAGTTTCGGTGTGTAAAGAGACTCAAGCCCGAAGGTGCCCCATGGTATCAAGCTGGGTAG----GAACAGATTACATCCTCGCTGGCACCTCCATGACCCTG--------CTC---------------TCTCTCAGGCTGGTGA-------GTGCCTAGCCACTGTGCGGGACTGCAGGTCTTGAGGG-----ACAATTCCTCGTTCTGCCTCTGTTTCTTGTCCTGCACAAAGT--GAATTATCTTCCCCGGCTTCAGGAGCAAGGCCGCAAAGGGTAACCCAGACTTTGCTGAGACCCAAGGAGCTGTGACCCACTTCCGACAAGAACAGGGGGATAGCCTA------ATCACTGAGGGGGA--------------ATGCTTCACTTGATGCGGGTTATCACAGAAAGGCTTACCCAGCTGCTCAGTGCCGCTCAC-AGCCAGTGCCCAACAAAGTGTGTCCCACTTTAC--GGGAAGGCGACTGCAGGCCTGGAGC--CCGCTTTGCTTAA-TCTTCCCAAGGAGTGAAATAGAGGG----AGCATCA-CCCGGTACCTCAAAGGGGAAAACTAATGTGAAAAGAGAG a score=12890.000000 s hg15.chrUn_random 560653 241 + 611077 CATGTTGTTGATGAGGCCACTAAGCCAAAGTGGAGAGAGTTGGGATCTTAGGGAGGAGCTGAGGTC------TCCCAAGCCCTG---CTCCCTGGGATGTCCAGGGTCAGAGAGACTCCAAG----GAGCAGAGGTACCCCAGCCAGAGGGGGCTGGGCCAAGGAAATTGGGACAGAGCGCCCGATTCGATTAGTTTGGA--------GCGCTAGCCTTGGGGCagacaccgtctacactagggcgcttttgacagat----aagg s mm3.chr5 116059281 221 - 149719773 CATTTCATAGGTGAGGGCTCTGAGTCAAAGTTG--------GGTGTCTCCAA-----CTTTGACTCAGAGTGTCCCAAGTGCTGTTACTTCCTGGG-TGTCCCAGCTCAGACATACTCAGGGACCTGGGTAGAGGT------------GGGGGCGGGGAGGGAGAAATTAGCA-----------ATGATATTTGTTTGTAGGAATCAGGCACAACCCCTGGGCCGGCCA--------ATTCAGGTTGGTTTTGTTGTTGGTGGTGG s rn2.chr14 77830252 216 + 107821284 CATTTTATAGATGAGGGCTCTGAGTCAAAGTTG--------GGTGTCTCCAGGAAACGTTTTACTC------TCCCAAGTGCTACTACTTCCTTGG-TGTCCCAGCTCAGACACACTCGGGGATCTGGGTAGAGGG------------------GAGGAGGGAGAAATTAGCAC------CACTCCGAAATTCGTTTGTAGGAATCAGGCGCAACCCCTGGGCCAGGC---------ATCAAGGTTGATTTTGCTGTT--TGTTTG a score=12560.000000 s hg15.chrUn_random 560894 258 + 611077 aaactgaggccagagaggGGCCAGATAAAAAGACAATGTCTGTGGGGAGAAGTGTT---TTTCTGATAGCCGTCCAGTTCACACAGGCTCCCCTGGGTCTGTCTGTGAGAGGCGCCTGGACACTCCTGCC---------------CCGTCCAGCCACGCGCCTGCCCAGGTTGGTGGC---ATTTCCATTT-----CT---CCCTCAGGC----------CTGGC-GGGCTTCCTCTGAGTCTGAGTTCTAATTCCCTCCGCTCTAGGGTTGTGTGGCCCTGGAGGAGGCGTCTTGTG s mm3.chr5 116059652 245 - 149719773 aAAC--AGACCAGAAAGGAGCCCTACTAAA----AATGGTGATGGAGAGAACCGTCCAACTTCTG--------CAAGTTC---CAGGCTCCCCT---------TGTGAACAGTACCT------TCCTGCTTGTAAAATGG------------------AGCCTG-TTGGGTGGGTGCTGTGGCTTCCATTTTATTTCTCTGCTCTCTGGATGGGGGAGC-CAGGCTGGGCTTCTTAGGCACCAGGGTTGTAATTCCCTCTGCCCTAGGGCCCTG-GCCCTTGGTCCTGGCCCCTTGTG s rn2.chr14 77830767 240 + 107821284 GGACTGAGACCAGAA----------------------GGTAGTGGGGAGAGCCTTACAGCTTCTG--------CAAGTTC---CAGGCTCCCCT----------GTGAGC-GTAACT------TCCTTCCTGTAAAACCGCAAACCTGTAAAACCGCAAGTCTG-TTAGGTGGGTGCTGCGGTTACCATTT-----CTTTGCTGTCTGGGTTGGGGAGGGCAGGC-AGGCTGCTTAGGCGCCTGGGTGGTAATTCCCTCCGCTCTAGGGCTCTG-GCCCTCTGGTCTGGTCCCTTGCT a score=16161.000000 s hg15.chrUn_random 563496 262 + 611077 ctGGCATTTAGGGTGATAGGTCTCTG--CTTGCT-----GAGAGGGTGCAGAGCTGAGCATGTTAGGAAGCTAGAGGGTTGGGTTTATATgagacagctgctgggaaggagggaaaaatgatgaattggggtctggttatgaagacccctgcatgccgagctgaagaatacggttcggttcttaatttgcaaagcaatggggagccactg---aaggttgttgagctggggagGCAGGGTTAAAGCTGGACCCTAGGAAGAGTCATCTGAAC s mm3.chr5 116062130 212 - 149719773 CTGGC---TGAGGCAAGAGTTCCCTGATCCCAGTGAAA-GTGAAGACCCAGGGCTGAGTGAGTTAGGGAGCTAGA--GTCAGGTCCTGGAAAGACAGCTGCCAAGAAAGAGAG--------------------AGTCCAGCAGGTCCTCTGAAGGACT----------------------CTTAATTTGAAAAGCAGTGGGGAGCCACTA---AAGGTTATTAAACT----AGAAACTGTTAAAACTAG-----GAGAATGGTGGGCTAGGC s rn2.chr14 77833303 230 + 107821284 ------------GCAAGAGTT----GACCCTGGTGAAAAGAGAAGATCCAGGACTGAATGAGTTAGGGAGCTAGA--GTCAGGTCCTGGAAAGACAGCAGGAGGGGGGGGGAG-------------TGGGAGGAGGACAGCAGGTCCTCTGCAGGGCTAGATTAAAAAAA--ACTGGGCTCTTAATTTGAAAAGCAATGGGGAGCCATCATCGAAGGTTGTTAAACT----AGAAACTATTAAAAATGG-----GAGAGTGCTGGGACAGAC a score=17894.000000 s hg15.chrUn_random 563758 554 + 611077 ACCACCCATATGCAGGGTGGACAGGAGATGAGGAGGTGCAAGTGGAGGTTCTCAGCATGGCCCAGGGATGAGCAA--TAATGCCCCCTGAAGGCAGGGGCAAG--CCGAGGCCCATCTCCACTGTCTGTGGGGCCAGACACAGTGTCGGT-----------------GGGTGTGGA-------GGGAGGGGGCC------------------------CCAGGCAACTG----------------TTGGCTGT---------TG-------AACCTGGCTGTGTCTTATTTTCT----CCCTTTAGCCCCTCACGCTCAGGCCTGGGGAGCAGTACAGTCTCGAGACATTCTCGTT----GTCTTAGTCTGATCCCCACGTCGCAGCCAGCAGGAAATGTCCTTGCAGCTGTGGAGATGTGGATCGGAACTAGGGCACC------TCACTCCA-GCTCAGCCGCTGGCCCACTAAGGTGTGAGCAAGTCACTGCCCTTGAGGGACCTTGATGTACCCCGCTGTTGAGGGGA-ACAGCAGGAACGCCCACCCCTGGGCTGGGATATGGGGAGTGCAGATCACCGCATACACAAGCCTTCCGCATACACTGAAAGAC------------------------------------ACCAAATGCTTTGAAAAAGATCAAAA-----TGTTCAAAACCTA s mm3.chr5 116062472 598 - 149719773 aCTAACCA---ACCCACCAACCAAACAACCTGGAAGAGTAATCTGAAGCCCTCAGCA---CCAAAGGAGGTGCTGCCCACTGTCCCTAGGACTCACAGGGAAGAACTGTGGCC---CTTCCTGGGCTGTGGA--CAGG-ACAGTGGCCCTCCCTGAGCTGTGGACAGGACTGTGGCCCTTCCTGGGCTGTGGGAAGGACTATGGTCCTTTCTGGACTGCCAG-CACTTGGCAGGACTAGCTAGCTTTGGCTGTAGTTATACCTGCAACAGTAGTCTAGCTGTGTCTTCTCTCCTCTACCCTCTTGGCTCATGGTGGTC----------AGTAGT-CCGTCTCCAGGA--TCTTATTAACAGCCACACAATTTCTTCCACATCACAGCCAGCAGGAAACTTTCTCAC-CCTCAGAGTTGGCAGATTTGAACCAGGCCCCCCACCCCCCACTCCGTGCTGTGCT-CTGTCTCT----------------TCACCGGTC-------ACCTCAGCATCTTCAGCTGCAAAAGGGACATAAGACACCCACCATCCACTGAGTCAGATTGTGGGTAGT-----CCACAGTGTGGACAAacctttgttgtatatttaaaaac--------------------------------------cttctcttttttaaaagatgcaaa---gagggaaagggtttg s rn2.chr14 77833645 527 + 107821284 -----CTA---ACCAACCAAACTAGCAACATGGAAGAATGAACCGAAGCCTTCAGCA---CCAACGGAGGTGCTGCCCACTGTCCCTGGGATTTGCAGCAAAG----------------------------------------------------------------GACTGTGGTCCTTCCTGGGCTGC----------------------------TCAGACACTTAGCCGGCCTAGCTAGCTTTGGCTATAGATACACCTG------TAGTCTGGCTGTGTCTCCTCTCCTCTCCCCTCTTGGCTCACAGTGCTC----------AGCAGT-CGGTCTCCAGGA--TCTTGTTGACAGCCACACACCCTCTTCCACATCGCAGCCAGCAGGGCACAGTCTCAT-GCTCAGGGTTGGCAGATTTGAACCAGGCCCCC-------------ATGCTGTG----TCTTCCA----------------TCACTGGTC-------ACCTCAGCATCTTCAACTGCAAAGGGGACTTAAGACACCCACCGTCCACTGAGTTGGATTGTGGGTAGC-----CCACAATGTAGACAAACCTTTGTTGTGTGTTAACAAACAAtctctctctctctctctctctctctctctctctctctctctctctctAAAAAGATGCAATATTGGGGGAGAGGGTTTG a score=115067.000000 s hg15.chrUn_random 564312 1740 + 611077 CTGTGGCTGCCTTCTGGGGGTCTAGCCATTCCTT-CCTTGTGAAAGTCTCTCTTTAGAAACTGGAAAGAGAAGAATTTTCATAAACTACCACGCCCAAAGGCTGGTGGACCagaggggagagaggagaggagtggggagaggagaggagaggggagaggagagggagaagaaagggggagaaggaagtgaaaagagagggaaggactgggcctgaggaggaggagatgggaggaggaaggaagagggggtggaagggaagaaggagtgggaggagaaatggaggggga--aggagagaggaggaagaagaaggagaaaagaggaggtaggaagaaggggaggaATATGGAGGGAGAgagggaagggaaggggaagtgtgcaggagggatggggagaagcggaggggaggcatggagaggaggggagggatggaaggagggggaggggaAAGATGTTGACCTCGG--CATTCCTGGTTGCACAGGTCTTGCAGCAATG-GGGTTCAGCCCTCTCCCTGCCTGGGCTCACTCATTGTCCCGGGGAGCTGAGGC--AGTCATGG--GTGCCATTCTCCCAGGGAAGGCCCACCCGGGATACAG--CCTCATGTGCGCGTCCCCCAAGCCTGGCTCCCTGCAGGCTGGAGACTGCCCT-----------GGAGCCTGGAA-CCGCCGGGGCCAGCTGAGAAGCCG-CCTCCGCCGCTGGAGTCCCTGGG---AAGGGTCCCCTCCACC-TGCCCA---CAGCCAGCCTGGGAGGCAGACGCGCCAACGTCTGGCCCCTCAGCAGGGACAGCGGCTCCAACAAAGCCACCCCC--GGGAGGGGACGCTGTGCCCATGGGGCTGCTCCTCCCCCAACCCCAGGGCCTGGCCCCAGCACCTGCCCTGTGCCAGGGCCACCGA--------GCTGGGCTC-CCTTGCCCTCCATTCAATGCAGGAT-TT---------CCCTCTTAACTTTCTTTCGATTTTGAAAAC---------TTTCAAACATAGGCAACAATGAAAAGAA----------CTG--GGCAGAGA--------------ACACCGCCT-GCCCCCCTCACCCAGGACCCCATTGTCCCCC---------------GCCCCTCCCCGCTGATTTCATAGTGTGTGGCAGGCCCCAGCACA------CCTGCAGGTAGA----------------CTGGCTTTGGAGAACCTCTCTTCTCAGAGCC---------CATTACAAAGG--CAGAAATTTGTGAGTTTGGGTCCCAGCTCTGCCATGGAAGCAGCAGGAAGACAGCGCTATTCATCGTCCTGAGCACCGCTTCTTC-CTGTGGAAATTGACATAATGAGGCCCCGTGGGAGTGGCTGCAGTGGCT-----------GGGGGGAGACAGTGACGGTGCACACCCAACTCGGGACCTCTGTCCCCAGGAAACCGCC-----TGGAGGATGGATGCTCTGGTGA--TGACTTTCAGAAGTGTG-ATGCCAAAATCAGGCACTGGAGGTAGACTGGCCTTGC--ACTCAGCCACAGCCCGCTGGACGCCAGCCTCTCCCGGTCTCCATGAAGATACGTGAAGCTGTGGTCACTTTAAGGCTCCGGGTGTGGGAATATCTGGTTTTAATATCAAGAGCACCTCGAGGTGGGTA-GGTTTTGGTTTCCACAATGGAGCACAGATTTGTGCTCTGAGTTCCCCAAATCACGGGGGACCTGCAGCCGTCTCAGGCTGCCGGTGACCTTGATTAGAAGTGACTTGGGGCTGGAGGAACAAGTCTGGAACACAGGGCTAGGGCAGCCACGGTGGAGAGAGCCTTTTCCCAAGGAGCCAGAGGGA----AGTTTCTGGAAACCACAGCCGGC-------CAGCACAGGAACC s mm3.chr5 116063257 1507 - 149719773 CCTTGGCTACATT-TA--AGTCTGGTTATTTCTGACCCTGTGAAAGTCTCCCTTTA-AAACTGGAAATAG---------------------------------------------------------------------------------------------------GAAGGGGGG-----------------------TTCTCTGCACTTAGGAACTAggaggctggaagggaaagaaag-------gggagggaatgagaaggaggggaggagggagaggggga--aggggtaa-----------aagagctgcagaggaggtag------------------agtgggagctagggTCTGGAAGCTGAGATGGGCCAGG--------------------------ACTAAGAGCTGGGGAACCAGGTGGGGAGGGAACTTGGAAAAACACAGCCCTGAGGTCCTCACCTGCTCAGCAGCACCAACAGTTGGGTGGGTTTTGTCCTCTACAGGACT----------------CTAAGGCTCTAAAGCTGAGTTATAGCTGTGGCAGCCTGTCAG---------CTCCGTGGCTCTGTTCCTCTTCTTTGACCCCTCCATGTTT--CTCTATGCACACGT----------------------GTAGCTTGAACCCCTCCCAAGACTGCAGAAAAGCCATTCTCCTCTGCC-CAGTCTCCAGATACAAGGAGTTGCCCTACT-GATGTAGGGAAGAAAGCACAGAGGACAG---------CACCTGCCCTCTGAATGGGGACTCTGGAGAGGACAAAGCCATGGCC---------------------AAGA--------CTCGTCTTAGTCCAGGA---AGCTTCAGA----GCTTTGGGCCAGAGGAGTAGATAGACCCTGATGGTCTCACCTTGTGCT-CTCCCTATGTAGGCTTGTGA-------CTGT--------CCCTTGGGGCAGGAGAACATCTGAATATTTCAAACCTA--CAGAAGCGGACTGAATACCATCTTCCTC--AGCATGGGCTCTCCTGGCTATTCCACTGGCC-ATCCATTTCACCCTCCAGCCAACTGCTCCTCTTGTGA---------CACCCACCCCACCA------------GTAGCAGGTCCCATCATG--GCAATCTGCTGTTAGAGTCTGGAGGTGGGG--ATTGCTTTGGTGG-----TTTTCCTGGAGACAGGATTCTATATTATGGAGAGCTAGAAATGCATAAATTTGGGTTCCAGCTCTGCCCGCTGATCAGCAGAGA-----------------CCCCAAACATGTCATCTACTCTCTGCAGGTGGTCATTA-GGCTCTCAGTGCTTGTGGCTGAGGTGGCTTCAGGAGAGTGGGGGGCAGGGAGCGAAAAGAAAAA--------GGG-----GGGCAAGAAGAAATCATCTGAGATGGATGACGGACAGCCAGATGGACGGATGCTTAGCAGGGGG-CTGCCTTTCTC-----CTGGAACCCGCCTGGCGCTGCCTGCCCAGTC-CAGCTCTTCGGATCCCCATCTTCCCC--------------------CAGCTGTGGTCACTTTAACAC------TGGCGGGATGTCTGGTTTTAATGTGAGGAGCATCTCGAAATAGGAGCAGGTTTGGTTTCCACAATGGAGCACAGACTTCTGCT-GGAGTTATCCAGATCCCAGGGGATCATTAGACAGCTCTGGCTGCCCGTAACCCTGATTAGAAGTGACTTGAGGTTGGGGAAGCCGGT-TGGAACAAAAGGCT-GGATGGTCATGATGCATGAAAACTTCTCCTAAGGACTCAGAAAGACAGAGTCTTCTGGAAAGCAAAGCCGGCGACTGAGCAGCAAGGGATCC s rn2.chr14 77834344 1577 + 107821284 CCTTGGCTGCATT-TAGGAGTCTACTTACTTCTGATCCTGTGAAAGTCTCCCTTTA-AAACTGAAAATAG---------------------------------------------------------------------------------------------------GAAAGGGAG----GGCTGTG------------TTCTCTATGCTTAGGGACTAGGAGGCTggaagagaaggga-g-------gggagggagcaaggagggaaggcagaagaaggggaggaggagggCTAA-----------AAGAGCTGCAGAGGAAGCAG------------------AGTGGGTACTGGTGTCTGGAAACTGAGATGGGCCAAG--------------------------ACCCAGAGCTGGGGAACCAGGTGGGGAGGGAGCTTGGAAAAACACAGCCCTGGGGTCCTCACCTGCTCTGCAGTGCTAATAGCTGGGTGGGTTTTATCCTCTACAGGACT----------------CTAGGACCCTAAAGCTGAGTTGTAGCTGGGGCAGCCTGTCAG---------TCCCTTGGCTCTGTTCCTCTCCTTTGACCCCTCCGTGTTt--atgtatgcatgcgtatgtttgtgtgtatgcatgtatgtaGCTTGAAACCCTCCTAAGGCTGCAGAAAAGCCATTCTGCCCT--------CTCCAGGAGCAAAGATTTGCCATACCAGACCCAGGGAAGACAGCTCAGAAGGCAG---------CACCTGCCCTCTGAGTGGGGACACTGGACAGGGCAAAGCCATGGCCCAGAGAAACAAAGCAGCACCAGAGA--------CTCATCTCAGTACAGGA---AGCTTCAGA----GCCCTGTGCCAGAGGAGCAGACAGACCCTGATGGTCTCACCTTGTGCT-CACCCTGTGTAGGCT-GTGAGGACACCCTGTGTTCTCCTCCCTTAGGGCAGGAGAACATCTGAATGTCTCAGACCTA--TAAAAGTGGACTGAATACCATTTCCCTCTCAACACAGGTTCTCCCAGCTATTTCACTGGCCCATCCATTTCCCCATCCAGCCAACTGCTCCTTTTGTGAACTCCGCCATCCCCCCCCCACCAA-----------GTAGCAGGTCCCACCGTAATGAAATCTGCTGTTAGAGTCTGGAGGTGGGGCGGTTGCTTTGGTGG-----TTTTCCTGGAGGCAGAATGCTATATCACGAAGAGTCAGAAATGCATGAATTTGG-TTCCAGCTCTGCCCGCTGACCAGTGGAGA-----------------CTCCAAACATGTCTTCCACTCTCTGCAGGTGGTCTTTA-GGCTCCCAGTGCTTGTGGCTGAGGTGGCTTCAGGAGTGTGGAGGAAAAAAAGAGAAAAG---------------------GGGCAAAAAGAAATCATCTCAGATGGATGATGGGCAGCCAGATGGACGGATGCTTAGCAGGGGGGCCGCCTTTCTC-----CTGGAACCCGCCTGGCGCTGCCTGCCCAGTC-CTGCTCTCCGGACCCCCATCTTCCCC--------------------CAGCTGTGGTCACTTTAACAC------TGCTGGGATGTCTGGTTTTAATGTGAGGAGCACCTCGAAATAGGAGCAGGTTTGGTTTCCACAATGGAGCCCAGATTTCTGTT-GGAGTTATCCAAATCCCAGGGGATCATTAGACAGCTCTGGCTGCCTGTGACCCTGATTGGAAGTGACTTGAGGTTGGGGAAGGAGGT-TGGAACAAAGGGCT-GGATGGCCATGATGCAAGAAAACTTTTCCTCAGGACTCAGATAGGCAGCATCTTCTGGAAAGCAAAACCTATGGCTGAGTAGCGAGGGAACC a score=6183.000000 s hg15.chrUn_random 570210 353 + 611077 GGACCCCCAGACCTCAGGCGGAGAGTGGAGGCCCCTGAGACCTCAGGCAGAGAGTGGAGGCCCCCCAGACCTCAGGCAGAGAGTGGAGAGGGTCCCTCAGACCTCAGGCAGAGAGTGGAGGCCCCCAGACCTCAGGCAGAGAGTGGAGGCCCCCAGGCCTCAGACAGAGAGTGGAGGCCCCCAGACCTCAGGCAGAGAGTGGAGGCCCCCAGACCTCAGACAGAGAGTGGAGGTCCGCAGACCTCAGGCGGAGAGTGGAGGCCCCTCAGACCTCAGGCAGAGAGTGGAGGCCCCTGAGACCTCAGGCAGAGAGTGGAGGCCCCTCAGACCTCAGG----CAGCAAGTCCTGCTGGGT s mm3.chr9 41118431 348 - 124467299 gaactaccGGGTCCCAGGTATACAGTGTGAACTACCGGGTCC-CAGGTATACAGTGT-GAACTACCAGATCCCAGGTATACAGTGTGAA----CTACCGGGTCCCAGGTATACAGTGTGAACTACCGGGTCCCAGGTATACAGTGTGAACTACCAGATCCCAGGTATACAGTGTGAACTACCAGATCCCAGGTATACAGTGTGAACTACCGGGTCCCAGGTATACAGTGTGAACTAACAGATCCCAGGTATACAGTGTGAACTAC-CGGGTCCCAGGTATACAGTGTGAACTACCGGGTCC-CAGGTATACAGTGTGAACTAC-CGGGTCCCAGGTATACAGTGTGAACTACCGGGT a score=51112.000000 s hg15.chrUn_random 572720 559 + 611077 GTGAATCCCTGTGCCTATGATTCTTAGCAACCAACG-AAGT-TCATTTTGTCCCCACCAGTCTATTCTGAGCACCCCAAAAGGGATCATT-----TGGATG------GGGCTG------------------GGAGGGGCAACCAGCACAT---GGACA-TTTGCAAGGTGGGGCCTGGTTCTCAGTCCAGGGTGCCCCCGGCGGACTCACAGCACCGAGATGAAGATGGGGACAGACACCAGCTTTAAAATAACCTCAAATAAATTTGCCCACAAACAGTGTCCCAATCAC-CCTACATTACATTCTCAGGACCAGGGGAGGACGTGCTAAAAC--AGCACAACTCCTTGGACCTGAATTGTCCGG--GCCAACC-----------GTCTGTCAATGAACCAGATTTTGCTGGAATTCTCTCGCTT------------CTTTAGCACAGTGGAAGTA---TTCATCTAAGGT-TAATTTATT-------CTGAAGGCTT--AAATACGCAAAGTAGAGCCGCGCTGGGATGAACGTCCTGTCCCAAGGCCGCCACCTCCAGGAAGTTTGTGGAACTGACTTGAAATAACAACACCCTCCTTGGACAGAGATGCGGAAATGCGCATTTTCCCTCTT s mm3.chr5 116066312 554 - 149719773 GTGGGTCATTGTGTTTACTATGCATGGTGACTGATAAGAGTCTTATTTTTCGTC--CCAACTTATTCCCAGCATCTCACAAAGCTTAAGTAGGA-TGGATGGAGGAAGGGATGGTCTCTCTTGCTTGCCAATGAAGGGAAATAA---CATGGGGGACAGTTTGTGAGATGGAACCTTGCTCT---------------------------CAGCACTGAGATAGAGATGGGAA-AGATAGCAGCGTTAATA-ACTCTTGAATAAACGTGTCCACAAAGAGCCTCCAAATCAC-CCAGCATTGCCCTCTTAGGACCAGGGGAGGACACACTAAATTCAGAAACAGCTTCTTGGATCAGAACCTTCCAGACACAAACCACTGGATAGATGTCTATTCGTGAGTCAGCTTTCTCTGAACTCCCTGCTCCCAATACATACATACTTCTACATGATAGAGA-----TTTTTCTGATTT----TTTTTT------CCTGGAAACTTT-GAGAAGCCAAAGCAGGA----------------ACCAGAGCCCACGGGTGCCACCTGCAGGAGGCTTGTGGAATTGACCCG--ATAAC-----------TGCTTAGAACTGTGGAAATAAACATTTCCTTGCAT s rn2.chr14 77837374 567 + 107821284 GTGGGTCACTGTGTCCATTATGCATGGTGACTGATG-GAGTTTTATTTTGCATC--CCAACTTCTT---AGCACCTCACAAAACATA-GTAGGCCTGGTTGGAAGAAGGGACG-TCTCTCTTGTTTGCCAATGAAGGGAAATAATAGCATGGGGGACAGTTTGTAAGATGGACCCTTGCTCT---------------------------CAGCACTGAGGTAGAGGTGGGAA-AGATAGCAGCGTTAATA-ACTCTTGAATAAACGTGTCCACGAAGAGCCTCCAAATCACACCAGCATTGCCCTCTTGGGACCAGGAGAGGATGCACTAAGTTCAGAAACAGCTTCTTGGATCAGAACCTTCCAAACACAAACCACTGGACTCATGTCTATTCATGAGTCATCTTTCTCTGGATGACCCGTCCCC--TCAACACACACTTCTACATAGTAGAGAGAAGCCTTCTTTGATATCTGATTTTTTAAAAAACCTGATAACTTTTAAAAAGCCAAAGCAGAA----------------AGCAGAGCCCATGGGTGCCACCTGCAGGGGGCTTGTGGAACTGACCCG--ATAAC-----------TGCTTAGAGCTGTGAAAATAAACATTTCCTTGCGT a score=38664.000000 s hg15.chrUn_random 573578 878 + 611077 CTCCCCTGCATCTCCACACCCACACCATTTCTACAATTCACATGGTATCTTAAA--GTTTCCAATGTGGTTTTGG-GCCTACGAAGGAGAAGAACTGAAGTGAG--CTTTAAAAATGACTCTTCCTTGTTCCTAAAAA---TGCTAATCGGACCATCTCCAGGGGAATCCTATATGCACAGCCACCCCGCTCCCCGCCACCAAATATGCAACCTAAATCTGACAGCAATGACCCAGGGCTCCTGGCAGGCCAGACCAGCAGGTGAGGTCAGGGGTGGGGGGCGGGCA-ATACTGCTGTCTGCAGAGTCCTGTGCTGTTCACATAGTCCTCCCAGCCAGGAATGTCTCATCCCCAC-CGGGGCATTGCCTCTTCTGTCCTCATCTCATAGACTACAAATTCAGGCCTGGAGGAATGAAGTCACCTCATTTATTTGCTTAGTCATTTGTCCGACAACTACTGATGTAATGCAGTCAACAGGCGAGGCCCTGTTCTGGCCCCAAGACAGATCCCAGAAGGAGCTCAGCCCTGTCCTTGCGCACATGGGAAGCCAGGCCAGGCACTCTTCAGGGTCCAATCACACATGAATG----------ACAGAGGAGTGCAGGGCGCAAGAGC-----GGGCTT-GGGCCCCAAGTCTCCTTCTGGCTCCTAC----TTTGTGTTTCTACACAGCAGGGAAGGAGGAGGGTCCCTGACC-----------------CCCTTTAGAATCCCTCAAAGATGTTATTATTGCCACTTCAGGTCTGTATTCAAGTCCAGCAGCCGCAAAAATTAAGCAGCTGCAAGGCTGCTTGTCCTCTCTGTTGCTTCTTTGCCTGCAATTAGTGCAGAAGGCCAACAGGGGGCAGCATCTAGCCTGGCTGTCTCATGGGGACATCTGAAGTGGAAAATAGCTCACT s mm3.chr5 116066866 696 - 149719773 CCCGCCTTCCTTCCCAGA---------ATGGCACCATACACAAGACATCTTCAAGAGTCTCTAAGGTTAATTTGGAATCTTCCTTGGTGTGGAGCCAAAGTGGGAAATTCAGAAA------CTTCCCATCCCCACAG----TGCTTATTGGACTA--------GGGATTTTACA-GCACAGC--CTGAGGTGCTGG------AAAGTGGAACCTAAGGCGTGCATCA-----------------GCAGACTAGGTGGACAGA-------AGGACTGAGCAGC--CCAGAGACTG--------AAAGCCCC---------AACTGGACCTCCCA----------------CCACACACCAGGCAGAGCCTTCATCTTCCTCCT------------AAATCCAGGCC----------ACGTCACTTC-------TGCTGTGTTGCTTGCC----------------------ATTAGCAGCTGCTGCTCTGGACTTGCC------AAGACCCCAGGAG---------------TCTGCGT---------GTTAGGCTAACCACACATCA-TGTCTAAATACAGAGAAATGGTTGCCTTTTGTAGAAGTGTGAGGAGTGGAAAGAC-----CCACAT---CCCCCATGTCTCCTTGCAGCTAACAAATGCATGACAGTCCTGTTCAGTA-AGAAGATGGGGCGTCCCAGTCTCTTGCGAACTAACTTGTCCCTTTAAAATCCAGC-AAGAAGTTCTTATCACCAC-TTAGGCTTGTTTTTAAGTACAGCAGCCAGA------GGGCTGCTTTGGGGAAGTTTGACTCACCTACT--TTCTTGGTCTGCAATTAGGAAAAGATGCCAGCAGGGGGCAGTCTCCATCCC-------------------------------CTAGCTCT-- s rn2.chr14 77837941 714 + 107821284 CCCACATTCCTTCCCAGACAC------GTGGTACCATACCCAAGACATCTTAAAGCGTCTCTAAGGTTGATTGGGAATCTTC-TTGGTGTAGAGCCAAAGTGAGAGATTCAGAAA------CTCCCCATTCCCACAGCGCTTGCTTATTGGACTA--------GAGATTTTACA-GCACAGC--CTGAGGTGCTGG------AATGTGGAACCTAAGGCATGAATTA-----------------GCAGCCCTAGTGGACAGA-------AGGACTGGGCAGTGGAGAGAGACTG--------AAAGCCTC------CCAGAAGGGGCCTCCCA----------------CCACACACCAGGCAGAACCTTCATCTTCCCCCTC----AGACTGCAGATTCAGGCC----------GTGCCGCTTC-------TGCTGTGTTGCTTACC----------------------ATCAACTGCTATTGCTCTGGACTTGAC------AAGACCCCAGGAG---------------TCTGCAT---------GTTAAGCTAGCCACACATTA-TGTCTAAGTAAAGAGAAATGGTTGCCCTTCGTAGAAGTGTGGGGAGTGGAAGGACAacatacacacacacacacacacacacacaGAGCTAACGA----ATGACAGTCCTGTTAAGGA-AGAAGTCGGAGTACCCCAGTCCCCTGGGAACTAATATATCCCTTTACAATCCAAC-AAGATGTTCCTATCACC----TAGACCCATTTTTCAGTACAGTAGCCAGA------GGTCTGCTTCAGGG-ATTTTGACTCACCCACT--TTCTTGATCTGCACTT-GGAAAGGATACCAGCAGGGGGCAGTATCCATCCT-------------------------------CTAACTca-- a score=20017.000000 s hg15.chrUn_random 574456 400 + 611077 TCCATTTAATCTTCATCTAAAAACAATAAGCCGATGTGAAGTTCAGAGAACTAACTTAATTAGGAATCATTTGCGGGGTCTCTGGAGCACCAGTTTCCTGAACTCCACTCTTCCCCACATATGCAAAGACAGCATCACTTAATGAAAAGGCAATTGAGGAGGCAAGGACTGGAGGAGGCTCAGAATCAGCAAATGGAGATTCAGGGGTTGCTGAGACTTCAGTCCAACAGGGTCCATCTACAGGAGGGGGAAACTGGGGTCCATGAAGGGCAGAGGATGATCTCAGTGCCCTCTGAGGGGCA---GCCCAGGCAGGGAAGAACCCACTCCCTGGCCAATACCTGTAGCATTCACATAGA---------------TGCTCTGACTGAATACAACTTTAAAGTGTAATTCCAAGATGAGG s mm3.chr5 116067792 340 - 149719773 cCAGTCTAGTGT---TCTTAAAACAGGCAACCAACATCAAAACTGGAGGACCGACT--------------------GGTCTTGCCAGGAGCAGCTTGCTGAATCTCATTG-------------TGGGGACCTCA-CACTGAGCACAGTGACAGCTGACCAGGCATGG-TTGATGGCTGTT-------------TGGACACCCAGACTTTGC------------CCTCCATGGTCCCGGTGCAGAAAGGGCATGCTGGGTCACCAGGGAGGTGGTCGGT------AGCACCCTTGGAGGGACACAGGGACAGACAGGAAGAA--------CCAGTCCTAAACTAAAATGGTTCACACAGAGGTCTTAATGTCAGGTGCCTTGGCTGGATTAAACTTT-GGATATAAGTCCAGGTTGGGG s rn2.chr14 77838825 314 + 107821284 ACAGTCTAATGT---CCTTAAAACAGGAAACCAATATTGAAACTGGAGGACTGACT--------------------GATCTTGCCAGGAGCAGCTTGCTGGATCCCAGAGTACCA-----GCTTGAGGACCTCA-TATTGAGCACAGTGACC-------------------ATGGCTGTT-------------TGGACGCTCAGACTTTGC------------CCTCCATGGTCCCCATACAGAAAGGGCATGCTGGGTCACTAGAGAGGTGGTC----------CCTCCCTT------------GGACAGACAGGAAGAA--------CCAGTCCTAAACTAAAAAGGTTCACACAGAGAATTTAACATTGGGTGCCTTGGCTGAATTAAACTTT-GGGTGTGATTCCAGGTTAGGA a score=139177.000000 s hg15.chrUn_random 583308 1810 + 611077 TCCACACCCCATGCCCTGGCTTGGGCCCGCTCCCTCATACACAGCCGATGTATGACA------AGTGTGTGGGCCCTGAAGAGGCCCCTGGGCTCTCAGGGGTTCCGGGAAGCACACT---AGGACTTTGACGGTGGCATGTTCCATGCTAACAGGGTGTGGCGGGCCTTCCAGCTCAGTGGGCAGGTCCAGGAGTCTAC-CAGCTCAGCGTGGTGCCCCGGTCCCAGC----CACCTGGAGCTGCACAACAAGCTGAGTCC-TTGCTGGCCACCAACACTGACGCAGG-CCCCATCCCTCCAGCCTGACCTCAGGAGGCTGGTGGGCAGGG-----AGCCTAGTCCCTAGGCCAGGTGG------------CCCTCCCCCCCAGCCACTGTGCCTGCTGTGTTCTAGGGATGGAGG--CCTGGGGACCTGCAG-GGTATGGCAGTGCCCAAGATCATGGTT------------CTTTCCACACTCTGGAGGTTGAGGAGGTGGGGAGTGCTGAGAAGAGGCGCTGTTGAGAGACAGACATCTCTGCTTCCTGGtgattccttcaataaccgggtgaaataacaggccaacctcagttcactgaagaggaaacagaggcccagagaggttagggaactcacttaagggcacacagcagcaggaagaggt-agatttgaatt-tgggacatggctgccccctg---ccacctagcctctgcacacacaagtgcatgcatacacacacatatatgcgcacacacacacgtgcacaGTGATTGAAACACAGA----TTTAGACCTTGGGCATGCAGGGCAGAAGGCCCATCCGAGAAGATGCAAACACAAATCCATTTCCTTCAAGTGTTGATTGATTTCTCTTCAAGAACGCCTGCATTATGCAAGG---GG--CTGAAGGTCAGCTGATTTAAATGGAAATGAGTTCGGGAAAAACAAATCAACACAGCTCCAGGTTCAATTCACTGGAAAAGCACATC----GCCTTGAGTTACTCAAGGAATGACAGGGCCATTGTAGAGATAGCTGGACAGC-CTGCTCACCGTGCTTCCGGGGGTCTCAGCCTTGGAAGATCACCGTGCTTCCGGGGGTCTCAGCCTTGGAAGATCACCGTGCTTCCGGGGGTCTCAGCCTTGGAAGATCACCGTGCTCCCGGGGGTCTCAGCTTTGGAAGATCACCTTGCTCCCGGGGGTCTCAGCTTTGGAAGATCACTGTT------CTCCCAGGGGGCTCAGCTTTGGAAGATCATCC-TGCTCCAGCTCCCAGGGGGTCTCAGGCTTGGAAGA----TGTCTCTGGAGTTGCTGGGTCCTCCATGAGTTCACTTATCCTGGCTGGAGCTGGGG-GTTACCACGGAAACCTGGAGGGACTTTTCCCCTAACAAGTCT-TTTTTTTTTTTTTTTCCCAAACAAACACTTTTTGGAAGAGTTTACCCCGAAGTGTGGCTTGGGTTTTGCAT-CTCAAG---------------------TGG--TCTAAG-CAGCTCTATAGTCTCTGCAAAAGAAAAACACATAttccctccctc-------tgtccttcccaccttctcgccctcccctcctccttctctcctgtctgccttccttccttttctccttcttcct--------------ccttcctccctctcttcct-----------------------tTGACTGGCCAGTCATCAGGCTGGTTTCTGGAACGGGGCAGGGAGCAGACAGCCAGGGCCATTCCCATGTGGCACTCGTGGCCGTGACCTCACTCGTGTTCTTCAGCTGGcctgtgaggccaccgtgctgtcttcattt-agaagtgcagacgcagagtcccagagaggtggagtgatttgcccaagatggcccagcaaatgggt---tcctgaacctggcagcagcccctctgcctcaggcattccctcctctcc s mm3.chr5 116070605 1754 - 149719773 TCCCCACCCCATA-CCTGGCTAG-----------------ATTGCAGCTGTATTACAGCTTGGGTTGTGCAGCTGCTGAAAGGGCCTCTGGGTCTGTGATGGTTCTAGAAGACACACTGGCAGGTCTTTGATGACAG--TTGTCCACTTTAACATG------------------------GGGTTAGTTCTAGAAACTACTTAGCCCAGGCTcctggcctgg-cctggcctggcTCCTTGGGC----------------TCC-CTGCTAGTTAT--GCTGTGACCCAGGGCCACATCAGTTCTGTCT-------GTAGAGTGTGAGACAGGAGTCTTGACCTGGATCCTGGAGCAGCTGGGGCCACATGATTCTCTACCCCACAAACCATGGGTCTG----CTTCAAGGGATGGAGGATCCTGGCGACCTGTGTCTGTGTGTCTCTTCCC-ACTCTGCAGCTGTGTCTGTGTGTCTCTTCCCACTCTGCAGCG---GGAGGTG----------CAAA------CTATGGGGA-------TTTTCTGTAG---------TTCTCCCAATATCTGGTGTGGTAGCAGACAAGCCTCCCTTGGTTGAAGAGGAGACAG--------AGAGGTTAGGAAATCCATTTAAGGCAAGGCAGCCACAAGAAGAGGTGACATTTGAATTTCAGGTCATTG-AGCACCCTGGATCACCCTACCCAGCACTCACAAACgtgtgtgtgtgtgtgtgtgtgtgtgtgCTCACAGGCTTACTACCAGTGATTAAATCATGGAGGGTTTTAGA-----------------GAAATGCCCGCCTCTGAAGATGAGAACACAAATCCATTTTCTTCATACTTTGATTGATTTCTCTTCAAGAGCTCTTGCATTATGGAAGGCTTGGCTCTGGAGGTCAGCTGGTTTAAATAGAAATAAGTCCGGGAAAAACACGTCAACACCACCCCAAGTTCAATGCCCCGGAAAAGCGCATCTCAAGCTGCCAGTCACTTGAGGAACGATGAGGACAGTGTTCTAGCAGCTTGGCAAAGCTGCAGACTATCCCCCAAAGACCATC--CCTTGG------GCTGTCCCTCTGGA----CCATCCCCCATAGACCACC---CCCCCATAGA--TCATCCCCCATAGACCAT----CCCCCATAGA--CCATCCCCCATAGACCAT----CCCCTGGGCTGCTC--CTCTGGACAATCTCTAATAGACAATTCCCTGAGCTGTTTTCTCTAGATAATATTCCGTGGACTGTCCCCT---GGGTCTTAGCTCTGGGAGAGGCTTGTCCCTAGG--CGCTGGCTCTTC-------------ATCCTGAAGGGAATTTAAGAGTCATAAGGGAGTTCCTAAGGG---TATCACTTCCCAGAACT-CTGGTTTTTCAGGTGCTCA---------TTTTTGAGGATGGTCCCTCCA----GCAGCTGAGACCTTGGATGCTCAGGGGTGGGGTGGGGGTGGGTGGGTAGAATCTAAGACAGCTGTGCTGCCTGTGTCTGAGCAGGCATTCCActtcctcccttctatccccttccttccttccttccttccttgcttccttccttccttccttccttccttccttctttccttccttctttccttccttctttctctcccttttcccttcTCCCTTACTTATCCTTTCCCTCCGAAGTCTTGACTGA---GGTTTTTGACTAGTTTCTGGAA-ATGACAGTGAGCCAGAGGCCAGGTCCTTTCCC-TGCTGGCCT-CTGGgtgttaagtcatttgc-tcactcagttggtatatgaggccaagtctccatgatcacttgagaaatagagaagctgagtcccagagaggggtagcaacttgcctgaggctgtccaccaaacaggtagGTCATCAGTCTGTCACTGGCATCTCC-CCTGAGGCCTTTCCTTCCCTTC s rn2.chr14 77841762 1598 + 107821284 TCCCCAACCCATA-TGTGACTAG-----------------ACTGAAGCTGTAAGACAGCTTGGGTTATACAGCTGCTGAAAGGGCCTATGAGTCTATGATGGTTCCAGAAGATACGCTGTCAGGTCTTGGATGGCAG--TCATCCATTCTAACAAG------------------------TGGTTAGCTCTAGAGTCTACTCAGCCCAGGCTCCTAACCTGG-CCTGGC-----TCCTTGGGC----------------TCTTCTGCTAGCTAT--GCTGTGACCCAGGACCACCTCAGTCCCTTCT-------GTAGAGTG--AGACAGGAGCCTTGACTTGAGTTCTGGAGCAGCTGGGGCCACGTGATTCTCTACCTCACAAACCAGGTGTCTG----GTTCAAGGGATGGAGGATCCTGGGGACCTGTGTCTGTGTG----------AGTTTGCTGCT------------CTTTTCCCACTCTGCAGCT---GGAGGTG----GTGCAGCAAAGAGGAGCTGTAGAGA----AAGTTTTCCACagcccactgagttccccccaaaccttgtgtggtagcagaccagcctctgttagttgaagaggaaacag--gcctagagaggttagggaaactattcaaggcaagacaaccacctgaagaagtgaaatttgaatt-caggacatcg-ggcaccctggatcaccctacccagcactcACAGACGTGTGTGCT------------------CTCACAGGCAGAGGACCAGTGATTAAAACGTGGAGGGTTTTAGA-----------------GAAATGCCCACCTCTGAAGATGAGAACACAAATCCATTTTCTTCATACTTTGATTGATTTCTCTTCAAGAGCTCTTGCATTATGGAAGGCTTGGCTCTGAAGGTCAGCTGGTTTAAATAGAAATAAGTCCGGGAAAAACACGTCAACACCACCCCAAGTTCAATGCCCCGGAAAAGCGCATCTCAGGCTGCCAGTCACTTGAGGAATTATGAGGACAGACTTCTAGCAGCTTGGCAAAGCTGCAGACTGTCCCCCATGGACCATC--CCCTGG------GCTGTCCCTTTGGA----CCACCC--------------------------------------------------------------------CCCACAGACCAT----CTCCTGGGCTGCTC--CTCTGGACAACCTCTAATAGACCATCCTCTGAGCTGTTTTCTCAGGACAATCTTCCATGGACTGTCCCCT---GGGTCTCAGTTCTGGAAAAGGCTGGTCCCTGGG--TACTGGCTCTCC-------------ATCCTGAAGGGAATTTGAG-GTCATAGGGGAGTTCCTAAGGG---TATCACTTCCCAGAACTCCTGGTGTTTTAGGTCTTCA---------CTTTTGAGCACGTTCCCTCCA----GCAGCTGAGGCCTTGGATGCTCAGG------------------GAGTGGTATCTAAGACAGTTGTGCTACCTGTGTCTGAGTAGGTATTCTAAtttcttctttct-----tgtccttcc-----------------------------tccctcctttcttccttctttc------tctttcc--------------------tcccttccctctttTTTGTCCCTTCCCTCCAAATTCCTGACTGG---ATTCCCTGACTAGTATCTGGAA-ACAACAGTGAACCAGAGGCCATGTCTTTGGCC-TGTTGACCTCCTGGgcattgtgccatttgc-tcactcagatggcatctgaggtcaagtctccatctccacttgagaaatatggaaactgag-cccagagaggtgtagcaacttgcctgaggttgtccagcaaacaggtagGTCATTGGTCTGTCACTGGCATCTCC-CACCAGGCCTTT-----GCTTC a score=35403.000000 s hg15.chrUn_random 585120 533 + 611077 ctcttctggcaAGTCCCTCCCTACCTGC-TTTGT-GTCCTGCAGCTGGTCTGGGCTGACTCACAACCCCAAGCCTCGGTGCCTCC--------TCCCTGCCACGCTGGGACTTGCCTGCACCCTAGGGCACCGACTCTTTGTTAAATGATGT-CTTAAACATTGTGGGCAGCGTTTACATCTCACTTGGAGATTCTCGGGCCTCCTTGGGCAAAATCTGCCACCTCTGCTCTGTCCCATCATGGTCCTTGGCACGAGTCCCCCTCGGATCACCAGTCCCTGGCTCCCACCTCCACTCACTTGGACTAGCCTGAAGGCTGACCTAATCCCATGCTGGGCCCCAGCCCCCAGAGCACAGAGCCAGGCA--CATGCAGTTGCTGTCATT---CTAGATGGGCCCGGGGAAGTAAAAGCATTTCAAGCCAGAAGGGCTGGGGGAAGGAACGACAAGGGAGAGGAGCTACCTCTGCTGTATTGTGAAAGACGGAGGTGACCAGAGTGGAGGGAC--ATTGGGGTCTCGAGAGAAGAGAATACCG-------GGAAGTTAGCTG s mm3.chr5 116072977 464 - 149719773 aTGTTCT--------CCACACCCCCTACGTTTGCAGGTCCATAGCTGGGCAGAGCTGGTTCATACCCTGCTGCTTTCAAGCCTACAATTTTGTCCTTTGCCA--ACAAGCCTTCCCCCAAGCT-AGGAAGGCCACCCATGGTCAGACAATCT-TCCAATCACCTCAGAGAGT-TGTCCAGCCTGTGTGGAGAGTCTCTGACTTCCTTGGG------------------------------------------ACAAATTCCCCTTGGATAACAGGGCCCTCACTCCCACCC------------ACTGCACCCAATGTTGGACTGATGTGACATTGGGCCCCA---TCTGGAGCATGGA-CCAGGCAGTCATGCTCTTGTAGACTTCCCCTTG-------CCTGGAGAGTG-------TGTGAGCTGGGTGGAATGGAGGAGGG---GGAGGGAGAGAGGAGACATGTTTGGTGTGTTGT-AGACCCTGGGATAAGGAGAGCAGAAGGACAAACAGGGCTGCCAGGAGCAGAGAACCCTT-----GAAGAGGGCAGCTG s rn2.chr14 77843770 460 + 107821284 ataCTCT--------CCACAC--------TGGGCAGGTCCATAGCTAGGCAGAGCTGGTTCAAACCCTGATGCTTCTGCACCTACAATTTTGTCCTCTACCA--ACAAGCCTTCCCCCAAGCCCAGGGAGGCTACTCATGTTCAGGCAACCCGTTCAATGATCATGAAGAGT-TGTCCATCCTGTGTGGAGCGTCTCTGACTTCCTTTGG------------------------------------------ACAAATTCCC-TTGGATAACAGGTTCCTTGCTCCCACCC------------ACTGCATCCAATGTTGTCCTGACGTGACATTGGGCCCCA---ACCAGAGCATGGAGCCAGGCAGCCGTGTCCTTGTAGACTTC---TTG-------CCTGGACAGTG-------TGTGAGCTGGGTGGAATGGAGGAGGG---GGAGGGAGGGAGGAGACATGTTTGGCACGTCAT-AGGCCCTGGGATGATGAGAGTAGAAGGACAAACAGGGCTGTCAGGAGCAGGAGACTCTTTGTTGGAAGAGGGCAGCTG a score=187882.000000 s hg15.chrUn_random 593285 3103 + 611077 AGGGGATTTGCCACTG----GGTCACTGTCCGGAACCCTGGGGACCACAGAGGCCAAGGAAGCAAGGCTCAGGTGGTCTGGAGGTCAGGCCCCTCACAGCTGCAGCCCCCCAACACAGCTTTGTGCTCTGACCCACCCTCTGTGGTCTCCAGCCCGGCCCCTCCCCAGGGCACCCGGAGTGCCGGGGATGCTGTCACCAGAGGTAGAGCCCTCAGGTGCGGCGGGGACGAGAGACAGCCTGGCCCTCTGCCCACGCTTCCAGGACCTTCCAGGATCCTGCAGCTCCTCAGACAGGTGGGCCCATCTTGCGCCAATCTGTGCCTGGCCGCCCTCGGGGCCCACCTGCGTCTTTGAAGGCCTCTATCCTCGGGCGGGTCACGGCCCAGGCCGACGCTCTCTGAAGCACCTGGGGTTCTGCGGTGTGTCTCTGGTGGGCTGCGTTTGTTCTT----TGATGCTGAGAGGAGTTTGGGGTGAGGGGCCGGGGCCACCTGATGCACGGTGGACACCTGA-GGGCTGACTGCTAATCATTCCCACATCCCTGCATTCCAAGTCAGAGAGTCCAAAAGCCCAGCCCACAGGGGTTCGAAAGGAACCTGCTAGAACTGGACA----GGTCCACACTTGGCAGCAGTCTCTCCCCTCACCCTGGACAGATGCCGGCCAGGCACCCTCAGGCCCCGTGCCTCTGCTCCCGGCCATGGTCATGCGGATTCGCAGCAGCCTCCATCCCGTGCATCCCCCCAAATGTGCAACACACCCGCTTTCTTCTCTCCCATCCCccttccttcttgcctccctccctcccttcctctcttccttccttccttcctGTTTTGCTTTAAATACTGTATCTGTATCAAAGGATTGCATGTGCCTGGTTCAATATTGGTATTAAGGCTCATAACGaaacacaggcacgtggcc----------ctgcccctgccccgcacatctgtggtgggcttc--ccgctggaatattccccctcatggctcttc----------------tcaccttagtcctacaatccttccgacttctgctcaggggtcactgcctccaggaagccttccT-------GCACCCTTCTCCTA-------GCCCCGAGAGCACTTGCCCCGATGC-----AGCTTCATATCCCAATGGCTGGGGAGGGGTGAGGGC-----------------------ACAgagcctggtgat--ggctgggccgtct------------ggataacccagggccatgtcctcacctcatgtccgaattcgcttcgcaaagttccttttgccacgggaggtacgaggttccagggattaggacatggacgtcattacagggagggctttattcagcTA-CATGAATAGACA----AGGGGTTGAGCGAATGAGGGATGAAAGGCGACATTTGGGGCCTGTTTTCTCCCTCCTTCCCATCTTCCCATTCT-GGAGCCTGGCTTTGTGACGGGGGCTGCCGAGGAACCCTCCCCGCGGACAGGGCTGGGAGACAGACAGAGAGCATCTTCCAGCTACGGCCTCCCCAGGCTTAAATTTCCAACCGGTAGATGACCTGCAGTCAGATGTCTTG--AGGCTACTGGATTCTCCCCAGGGTGGCAGGCCTGGCCCTCGGGCCATGAAGGTGGGGTTGTGTCCAGCCCTGCCCTGCCTTCCCCCTTGTGTCCAGGGAACAGCCAAGCCAAGGGAGGCCAGGGGCACAGGGTGGACTCACCCCAGGTGTTGGTCCCGTGCC-TCGGTGCTCCTGAGAAGCCCAGCAGAGCTGCGGATTGTGGCATCTTCACGCACTT---ACGGGTGAGGAACGGA--GCCGCTGGTCCCAGCCCCGCCGGGCTGCCAGGAGGGCAGCTGCTTCATGTGGTCCCCAGACCTGGGCTGGAGGGCAGGCTGCACCATTTGGGTGGAAGGCAAGGAACCAGCCAGTGCTCTGTGATCTGTGCTAGGATTCTGGGACCCAAAACAGCAGCCTCTGGTTTGCAGCCAAGCCTGCAGGAGCGCCAGCCACTGGACCCGCCTCCTA-------------------ACC-----------CGGGCTGCACCTTGCCAgctcatgctctgagctgcacttcacacca--gaggatgataagaacagagaggcaaggggagctgcctggggtgaccaggctgggtggcagtatggctgggattagcacccacgcctgttctcctcatgcccatgttccttcatcatgccaGGGACGTCT-CCCTTCTTCTTCCTCAGAGATCCCCAGTTCAGGCTGTGTCCCGCCCCCAGCGTGTTCCTGCAGGAGGGGGGCTCCTGCCTGAGATCCCTTC--CGGTGGCAGAAATGTAACCGCCAGTCCCTCCA---CCCAGGGAGCAGGGTGCCCATGTACCCCAGTTTTTCCTCCTGGGAAGGGGGCCAGACCCCTGCCTGATGCCTGGAAGACCTTGTCAC---------------------CTGGGTGGGACCGACACGGACGGGGCAGTGACAGTTACTGTGTGCCGCTGTGCTGCAGAAAGTG--TGAGTGTC-----CATGCCCTGCCGATGA---AAACCATCGGATTTATTCAGCAAAGTGAAGCTGTCGAGGTCGGGCAGGTGGCTGTGGA--CAGAGGTG-----------AGGACCGAGGCTGTACCCTCCCGAGAAACCGCCGCAGTGAGGAGAGGAGCCCGGCCCCGGGGAGGCTGCCAGCCGCTCTGGACCAGGCCCTGTGCTGGGCGGGGGCCTGGACCCGGCTCCTGCCGACCTGCTGTCCCACATGGTGGAGCACTTAGCCAACTCGGGTTCTTCTAGAAGACTTGACGGATGGGCTGGGACGCCCCACTCCCCACAGAGCTGCTCAGGCCGCGATGCTCCACGTGCCAGAGCTCCTCGGTAGACGCTCCGACACCTGGGCGCCACAGACAGACGGACAGGATGAGGCAAGAGG--Cttcacacagcaggtagcgctccagcgtgccctctgcactctaatttgcccagacagtttggagtgtttcagtgactcaggtgaggaatcacagacccgcggcttcagttcacatcaaaggggctctattgtcagctttaaatttatctcttaaagagccaagaa----aaaagtcagataaaatggcaagaatgcgcaagaaaggcaagaaaaggtgatcaaggaagctgaaagaagccattcccgctcagagaagggaacggtcacggaaagaacgcactcagat-ggcacttggagcggccgttcttc s mm3.chr5 116076513 2555 - 149719773 aGAGGATTTGATATTGGGCAGGCTGATGTTCTGAAATCCAGAGACCATAGAGGCCTAGGATGC-------------CCTGG-------------CAGGGCTG-AGTCCCGCAGC----CATTTTGC---------CCTTCAG--GTCTCCACCTCAGC------------CAACCAGAG-GGCAAAGATACTTCTGTAGGAAGCAGGACCCACGGGT-----AGGGAGGAAGGACA--------CTCTCC-------------ACTATCCGCAGTCCTGTAGC-------ACAGGTGGG-CCATCTTGCACCCACATGTGTCGGGCTGGCCTGCAGGCACTCCC-TGTGTTTGAAGGCCTCCGACTCCAGTGAGGTCGAGGCCTAGGCCGACCTGCTCTGAAGCACCTGGAG-TCTGCAGTCTGTCTCTGATGAGCTGTGTTTGTTCTTCATCTGATACTGAAAGGGGCATGGGGTGAGGCTTTGGGGCC-CCTGCTTTATGCTACACACCTGAGGGGCTGCTGGCTAATTGTTCCCACATCTC-GTGATCTATGCCAGA------AAAA-------TCACAGTGGCTTGAAAGGAGCCTGCTAGGGCTGGGCAGGCAGGTCTACACTGGGCAGTA----CTGCCCCCTCCTGGAGCAGACCCTTGCTGGATGTCCATATG--------CGCTGGCCCCAGACACAGTCA----------------ATTCTGTTCTGGGAACACTTGCCAATGTGCG------CCTCTTCCCACT-------CCCAACTCCTTCCTGC-----------------------------------GATGGTTTGTTTGAATGTCTCATGCCCTGTCCTAGGGTTGC-----TCAACTTCAACGCTG-----AAGGCTCATAA-GAAAAGCAGGTCACAAGCCCTGTCTGTCACTGCACAAACCCTGTCTGTCATTGTTGGGCCACCGCCACTGTA--GGCGTCCCTGAGAGCTTCTC----------------TCCTCTTGCTTT-----CCCTCACTTCATCGGCTTGGTGGTCACCACCTCTGCTCTGCCCCCCC----CCCACAACCTGTTTCTGCTTCATCTTCCAGGGAGAGTCTGCCCTTAGCCTTCCTAGCTTCTGACTGTGCCAGCATGCTAAGGCTGTGTTCCTTCTGCCCTACCATCCCTGTGAACAGGGCTTTCCACTCTCCCTGTAACATCTCAGGACTGTCGGCCCCTACCCTAGGACAGGACCACTTCACGAGTCTGAACTTTTCCCACAAAGCCCCCTTTGCTGTGGCTG-------------------AGGATGCATACCCAGTTGCAGGCCAGGTGTGTTTTAGCCGCCACAGGTAAACACAACAGTGGTTGAGTGGCTGAGG---------------TTGGGGCATCTCTTCCTGCT----------TTCCCATGCTGGGAGCCTGGCTGTGTACCAGGG-----------ACGCTCAT-------------------------GAGAGC---------------------------CAAGTGTTC-------AGGTGACC---------ACGTCTTGCCAGGCTGCTGGACAGCTTCTCGTCTGGTAGAC-----------------------------TGCCCAGCCC-----------CTCTCTGATGTGCAGAG-ACAGTCCTGGCTGGAGAGGGT----GCA-AGGATGAAC-----------CTTGGCCTGGTGCC-CTACAGCTCACgaaaagctgagcagaaccactgattgcagcatcttcaagctattatcatcactgaggaatggcgtgcagctggtgctgacct--accagcaaccaggaggg-agcatctgcctgtgcctc---------------------------------------------------taagctggtgctctgttctccttgcacagacttTAGGACTCCCAACAGCAGCCTCCAGTTTACAACCAAAGCTTCCTGACTTT---CCTTTGACCCAGCATCCCATGGCGATTTACTCAGTGATGCCAGAGTCTCT--GGGGTTCTGCCTTGCCAGGTGCAGCTCTTA-----ACTTTGCACCG--GGG-------AGAACAGAGAAGTTAAGTAATGTGC-TTGGGTTGCTCAGCAGGATGCCATGA------------------------------------------------CATCATGCTTAAAGCTTCCACCCTCCTGATTA--GAGAGATCTA-------------GTTCTTCCTGCACGGGGTTTGTCCAGGACACA-GACTCTGCTCCAGCCCCTTCC-----------------------TGGCCCATCCATATCCCAGGG---------------------------------TGGGAAAGAGG----------GATTGGGGAGTTGAGAGTAAGGCTGT-------------------TACTGGGTTAGTCCAATGCAGATGGAACCATGGCAGTGA-------CTCCCACCATACAGGAAGTAGCCAAGGATC--ACCTATGTTTTGCCAATGAAAGAAATGGCCTGTTTTCCTTAGCAAATTGACACTGCTGTGGGTTACCTGGTTGGTGTGGGACCAGTAGTGTCAAGAAATCAGGGACAAAGATGGAAACTTTCTTAGAAAGAT---TGGTATGTGGATGA-------------GGAGCTGGCGAAGGTGCTGGGCCTGG----GTGTTGAACAGAAGTGAG----TGGC-CCTG------TGCTAT---------TGGGATGCAGAGGCCCACGGGGCCCTT--------CCTCATGTCAAGGGTATGGAGCTCCGGT---CACAGGACTGCTCAGGCTGCAGGGATGAGTGTG-----------------------------------AATGCAGA-----GGTCTGGAAGA-GCTAGATGCTCttcagagagttgacagggctccaaggtgctgtgagaactgtaatttgctaagacagttcagagtgcttcaataaagcaagtgagaaagcacagactcctggctt-ggctcacatcaaagataccacactgtcaactttaaatttatctcttaaagagctgagaggaaaaaaaattaggtaaaatggccggaatgtgcaagaaagccagtcac---taaacaatgaagccaagaacagccatccca------aggagcga--------ggaaaataggt-ctcagatctacgct----gctgccgtcattt s rn2.chr14 77846767 2440 + 107821284 aGAGGCTTTGATATTGGGCAGGCTGATGTTCTGAAATCCAGAGACCATAGAGGCCTAGGAAGC-------------CCTGG-------------CAGGGCTG-AGTCCTGAGGC----CATTTTTC---------CCTTCAG-----------------------------------AG-GACAGAGATGCTTCTGTAGGAAGCAGGACCCATGAAT-----GGGGAGGATGGACA--------CTCTCC-------------ACTATCCCCAGTCCTGCAGC-------ACAGGTGGG-CCATCTTGTACCCACATGTGCCTGGCTGGCCTGCAGGCACTCCC-TGTGTTTGAAGACCTCCATCTTCGGTGAGGTCGAGACCTAGGCCGACGTGCTCTGAAGCACCTGGAG-TCTGCAGTCTGTCTCTGATGAGCTGTGTTTGTTCTTCATCTGATCCTGAAAGGGGGTTGGAGCGAGCCTTTGGGGCC-CCCACCTTGTGCTACACACCTGAGGGGCTGCCGGCTAATTGTTCCCACATCTC-GTGATCTATGCCAGA------AAAA-------TCACAGTGGCTTGAAAGGAGCCTGCTAGGACGGCACAAGCCAGTCTACACTGGGCAGCA----CTGCCCCATCCTGGAGCAGACACTTGCTGGATGTCCATACA--------CGCTGGCCCCAGGCAGAATCA----------------ATTCTTCTCTGGAAACCTTTCCCAGTGTGCA------CCTCTTCCTGCT-------------TCCCTCCTGT-----------------------------------TATGGCCTTT------------------------------------TAAGCTTCAGCACTG-----AAGGCTCCTAA-G--GAGCAAGCTGAAAACC-------------------------CTGTCACTGTTGGGCCACCCCTACTGTG--GGTGTCCCTGAGTGCTTCTCAAGGAGAAAACTAGAGGTCGCT---TTT-----CCCTCACCTCATCTGCTTAGTGGTCACCTCCTCCCTCCCTCCCTCCCACTGCTCACAGCCTGTTTCTACTTCATGTTCCAGGGAGAGTCTGCCCTTATTCTTCCTAGCTTCCAACTATACCAGCATGCTAAGGCTGAGTTCCTTTTGTCCTAACATCCCTGT-------GCTTTCTGCTCCCTCTGTAACACCT------------------------------------------------------------AGGCCCCTTTTGCTGTGTCAG-------------------AGGATGTGGGCACAGTTGCAGGCAAGGTGCATTTTAGCTACCACAGGTAAGCACAA-GGTGGTTGAGT-----AGA---------------CTGGGGGGTCTGTTTCCCCT----------TCCTCATGCCGGGAGCCTGGCTGTGCACCACGG-----------ATGCTCCT-------------------------GAAAGC---------------------------CAAGTGTTC-------AGGTGACC---------ATGTTTTGCCAGGCTGCTAGACACCTTCTCGCCTGGTAGAC-----------------------------TTCCCAGCCC-----------CTCTCTGATGTGCAGAG-ACAGCCCTGGCTGGAGAGGG-------------TGAGC-----------GTTGGCCAGGTGCCTTTACGGCTCACTAGAAACAGAGCAGAGCCACCGATTACAGCATCTTCAAGCGATTATCATCGCTGAGGAATGGCGTGCAGCTGGTGCTAACCC--ACCAGCCACCAGGAGGG-AGCATCTCCCTGTGC----------------------------------------------------------------CTCTGTTCTCCTTGCAAGGACCCTAGGACTCCCAACCACTGCCTCCAGTTTACAGCCAATGCTTTCTGAACTT---CCTTCGACCCAACATCCCACCATGATTCATTCAGTGATGCCAGAGTCTCTGGGGGGTTCTGCCTTGCCAGGTGCAGCGCTTA-----ACTCTGCATCACCAAG-------AGAacagagaagttaagtaacaggctttgagttgctcagcagaatgccacca------------------------------------------------caccaggcctaaagcttctacccttctgagtc--GAGAAGTTTC-------------CTTCCTCCTGCAAGGGGTTTTGCCAGGACAGAGGACCCTGCTCCAGCAGCTCCCCCCATCAGCACACACAATCCACTTGGCCCATCTGTATCCCAGGG---------------------------------TAAGAAAGATG----------GCCTGAGGAATTGAGGGTAAGGCTATTTATTACTGGTACCAGGTATCCTGGGTTGTCCCAATGCGGACAGAATAATGACGGT---------CTCCCACCATATAGGAAGTAGCTAAGGGTCAGATCTACGTTTTGCCAGTGTTAGAAACTGCCTGCTTTCTTTGGCAAATTGACACTGCTGTAGGTCACCTGGTTGGTGTCGGACCAGTAGTGTCGAGGGAACAGAGACAAAAATGGAAACCTTCTTAGAAAGATTAGTAGTATGTGGATGA-------------GGGGCTGGCGAAGGTGCTGGGCCTGG----GTGTTGAACAGAAGTGAG----CGGC-CCTG------TGCTAT---------TGGGATTGAGAGGTCTGCCAGGCCCTT--------CCTCATGTCAAGGGTATGGAGCCTTGGT---CGCAAGACTATTCAGGCTGCAGGGATGAGCATG-----------------------------------GATGCAGA-----GGCCTGGAAGA-GCTAGATGCTCttcagagagttgacagggctccaaggtgccgtgagaactgtaatttgctaagacagttcagagtgcttcaataaagcaagtgagaaagcacagactcctggctt-ggctcacatcaaagataccacattgtcaactttaaatttatctcttaaagagctgagggg---agaaattaggtaaaatggctggaatgtgcaagagagccagtcac---ctaacaacgaagccaagaacagccgtctcc------aggagcga--------ggaaaataggt-ctcagatctactc------cagccgtcattt a score=47454.000000 s hg15.chrUn_random 596713 479 + 611077 caggggacaggtttt---gaatagaagcaaagaacagctcttggcttatggagggaagcc-----attagtaggcaggatgaaccgggtgaatacactggaaaaCACAGaacagctttcgtgc---cattatta-----------------gtaatgagttgtgaagtcaaaa-cg-----aaaagaaaacag--------------cttt--------------------aaaaaa-------------------ccatcaggagtcaaaaacagcttt----cagcctcaccgtaagggaagctggaactaataatatctttccagtgtttacttagagaatgatgtcacggcaccgtctc-g-------------tgggggcagacaga-----------ggcacacagggcagagccctgagaaatcca-ctttaccacttgccaggcaggtaagaagtagcacgtcgcatttt------------------caatatgcacactgtttgttaatttttataaatgtgtgacattttgtgattctttctacttgtaagtaaatgttcacctttgttctcaattctgcactcataattttgcattgttttc s mm3.chr5 116079068 549 - 149719773 cagagaagaggtgccatgcaaatgctgtgaggagtggctcttggatt------gATAGCCCCGTCAAGAGTGGGTCCAGGGA----------------GGAAAACACAAACTTTGTCTTTTACttttatttttttatttttttttGACATTGCCATGAGTTCTGAAGCTAAACGCAaaaacaaaacaaaacaaaacaaaTTGTTTTTCTTTTCCTTAACCCCTCCCAAAAAAAAAAA-----------------CCCCAAcaataatcaaaaccaaatttacaccaggctccc---gagggaa---ggagata-----atcttgcttgtctttgtatagaaaatgatatcgcaggctcgtcgtggggaaaaggcggctcgggatcagacagacagaaa-----ggcagcaaagacag-----tgcaagccccatttttattacctgccagactgctaataaaaatcacatgttattttttccgggttttctccttccaatatccgtgctatttgtcaattgtgaggaatgtgtca-attctgtgattctctccgcttgtaagcaaatacgcacctttgtTCTCGGATTT-CACTCACA---CTGCCCTGGTTTC s rn2.chr14 77849207 561 + 107821284 cagagaagaggtgtcatggcaatgatgtgaggagtggctcttggatt------gatagcccagttaatAGTGGGCCCGGAGAGCGTGATGG-------GGGAAATACAGACTTTGCCTTTTCC----ATTTTTT--TTTTTTTTTGGCATTGTCATGAGTTCTGAAGCTAAAAGCA-----AAAACAAAACAAAACAAATTGTTTTTCTTTTCCTTAAGCAAGCCAAAAAAAAAAAAAAGAGAGAGAGAGAGAGACCCAAcaataatcaaaaccaaatttacatcaggctccc---gagggaag--ggaggca-----atcttgcttgtctttgtatagaaaatgatatcgcaggctcgtcac-gggaaaaggcggctcaggatcagacagacaaaaaaacgcagcagcaaagaaaa-----tgcaagccccatttttattacctgccagactgctaatcaaaatcacatggtagtttttccgggttttctccctccaatatccgtgctatttgtcaatcgtgaggaatgtgtca-attctgtgattctctctacttgtaagcaaatactcacctttgtTCTCGGATTT-CACTCACA---CTGCC-------- a score=51143.000000 s hg15.chrUn_random 600452 377 + 611077 CTGGGTGT---------------------CAT--TCTCGACATGACAAAATGCCGTGGGG---AGACCCGGCTGGAATTGCATTCTTGGTGGCGTGTTGTCATCTCAGCTGAGTGGGCGGGCCTGAGCAGGAAACGCCATGAA--AATCATTTTTCTATTTCTGAGCATACTTGTCAGCTTAATGGGAATTTTAAGTGGTTTGCTGAACTTGCACTGTGTGAAGAACAGAACTTAAAAAGCCACATGTTCACTCTACATCGATTCTTTATCTCTCTCTTCTGTGTTTTCCCCCCAAAAGAAATCCATTGCTCACCGCACCGTTTACCAAGC--TTCCCGCTAAGACCCTTTCCCCTCACGCGCTGGTGCGTCTTGGGGGCCCTCCCTACCGCTGGCAGTAGTCGCCA s mm3.chr5 116080228 350 - 149719773 CTGTGTGA---------------------CATAATTCAGACGTGACAGGGCACCCCGAGAATCAAAACCGGC-----------TCCTTGTGGGGTCTTGTTTACTCGGCTGAGTGGATAAGTCTGAGCAGTAAATGCCATAAAAGAATCACTTTTCTATTTCTGAGCATGGCCGTCAGCGTGATGGG-GTTTTAAGTGGTTTGCTGGACCTGCCCCGTGCACAGGAGAG-------AAAGCCACATGCTTGTGGGGCATCGATTCCCTTTCTCCTT-CCCCG-----TCTCCCCAGAAGAAACC--TCGCCCACTGCACGGAATCGGCAGCTTTTCCTGCCAAGACCTTCTCTCCTGAC-CATTAGTAAGC--------CACCTCCCATCACTGGCAGAAGCCACCA s rn2.chr14 77850363 372 + 107821284 CTGTGTGACAGGCGGTCGCCCACTGTGGGCATAATTCAGACTCGACAGGGCACCCTGAGAGTCAAAACCGGT-----------TCCTTGTGGGGTCTTGTTTACTTAGCTGAGTGGATAAGTCTGAGCAGTAAATGCCATAAAAGAATCACTTTTCTATTTCTGAGCATGGCTGTCAGCATGATGGG-GTTTTAAGTGGTTTGCTGGACCTGCCCCGTGCACAGGAGAG-------AAAGCCACATGCTTGTGGGGCATCGATTCCCTTTCTCCTTCCCCCG-----TCTCCCCAGAAGAAACC--TCGCCCACTGCACGGAATCGGCAGCTTTTCCTGCCAAGACCTTCTCTCCCGAC-CATTAGTAAGC--------TACCTCCCATCATGGGCAGAAGCCACCA a score=26656.000000 s hg15.chrUn_random 603768 408 + 611077 CAAGGAAATGCGTGGTAAATGCAGTGATTTATGCAGGTACTTAAGGCCACAGTGGCTCTGCCCAACCGCCTGGAGGTGATCCAGGCCCCATCTCTCCCCATGCAGGCTTCCTGGAGGTTCCTGGAGGTCTGGCAGTGCAGGTGGG---CAGGACCCTTCCAGTTGGGTACCAGGAAGGGATGTGGCCTCTGCGGGGTGCCCCAAAGG---GATCCCTCACCTGGAGTGCACTCAGAGCCCCCCTCCCCTGCTATCTGGGCCTGGGCTGAGC-TCAAGGGTCCCAAGCAGAGGGAAG------------GCCAAAGGGGAACACTGCAGAGGGATGCTGGGAAACCCTCTTGCCAGCTCCTGTTCACTGCACTTCACAGTGACT--GAGCCTGGGAAACAGCTCAGCTCACTGCAGTTGG-GCAGAGAGGG s mm3.chr5 116083737 362 - 149719773 CAAAGAAATAA--AATAAACCAGGTAGTTAACACAGGCAGTTAAGGCCACGGTGGCTTGAACCAGCTG---GAAGGTGA----------------------GCAGACACGTTGGGATGACTCTGAG----GGCAGGAGAGGTGGGAATCAGGA-CCTCCTGGATGGACAGAAGGGTTGAAAGTGGGCTTG--AGTGTACCCTGAATGCCAGGCTCTGGGACTGAGATATACAGGGAGCCCC----ACCCCC--TTTGGGCCTGGGTGGCACTTAGGAAGTACTACATGGTGAAAG-------------GCCAA---GGAGCTTGGCAGAAA------CTG----CTGCTTGCTGACTCCCGGGCATAGCACTTCACAGTATGTAGAAAGCCAGGAA--TGCTTGGCTCTCAGCACCTGGCTCAAGGAGGG s rn2.chr14 77853539 381 + 107821284 caaagaaataa--aATAAAATGGGTAGTTAACACAGGCAGTTAAGGCCTCGGTGGCTTGGACCGGCTG---GAAGATGA----------------------CCAGGCACGTTGGGATGACTCTGAG----GGCAGGAGAGGTGGGAATCAGGA-CCTCTTAGCTGAACAGAAGGGTGGCAAGTGGTCTTG--AGTATATCCTGAATGTGAGGGCCTGGGACTGAGATATAAAAGGACCCCCCGCTCCCCAC--TTTAGGCATGGGTGGCAC-TAGGAAGTAAT-CACAGTGAGAAGGATATCCTCCCTGCCAA---TCCTCACAGTGAAAA------GGGTATCCTGCCTGCCAACCCCCAGGCATAGCCTTTCACAGTATGTAGAAGGCCAGAAG--TGCTTAGCTCTCTGCACCTGGCCCAAGGAGGG a score=24596.000000 s hg15.chrUn_random 605121 294 + 611077 TGAGGAGGAAGGCA--GAGACTGTGCCCTCCCTCAGCTCCTCAGCGGCGTGGGTTCCTCTGGCACTGACCTGACCCGGGAG---GAGATGACGTCTGCCC---CAGGAGGGCCCCCT---GCTCAGATGA-GGTGCCCTGTGGCAGGGAAGCCCAGGCGGCTGTGCAGAAGAAGGC-TGGGAGCCCAGCC---CACCC-ATCC-GCAGTGCCCAGAG----AAGCAGGCAGGGCCTGTCTGTGGCACAATGGTGCCACCCAGTGGCCATACCCCCAAATCGCACCTGTGC--------CAG------GACCAAAGCTGGGCAGGCAACCC s mm3.chr5 116084560 300 - 149719773 TGACGTGGTAGACAACGGGACAGTCTGCTCCAGGAGAGCTCTGGCATCCTGGGTTCA---------GACCTGCCTAGGAGGCTCAGGTCCAGGCCTGCTCCTTCAGGATATCTGCCTAACACTCACATGCAGAGTCCCCATAGCAGAGTCA-----------GTCCAGATGAGGGCTTTGGATTCCAGACTTGTCCCCTGTCCAGCAGTCAACAGGATTCTCAGTAGGCA-------TATGTGACATAATGGTGCCACCCAGTGGCC--ACCTCCAAATTGCATCCATGAGCTATAGGCAGGAAAC-CATCAGAATTGGGCAGGCGCCCC s rn2.chr14 77854391 296 + 107821284 TGATGTGGTAGGCAAGAGGATAGTTTGCTCTAGGAGGGCTCCAGCATCCTGGGTTTA---------TCCCTGCCTAGGAAGCTCAGGTCTAGGCCTGCTCTTTTAGGATATCTGCCTAACAGTGATACCT----TTCCCACAGTGGACTAA-----------GTCCAGATGAGGGCCTTGGATTCCAGACTTGTCCCC-ATCCAGCAGTCAACAGGATTCTCAGCAGGCA-------TATGTGACGTAATGGTGCCACCCAGTGGCC--ACATCCAAATAGCATCCATGGGCTATAGGCAGGAAACGGGTCAGAAGTGGGCAGGCGCCCC