0 u @
¹ ( .
Q$ &5
jM ^ ( ]v ؆ G
( s table dhcHumDerDenAnc
"Human Derived, Denisova Ancestral variants and functional effect predictions from high-coverage Denisova sequencing project"
(
string chrom; "Reference sequence chromosome"
uint chromStart; "Start position in chromosome"
uint chromEnd; "End position in chromosome"
string name; "Human allele / Denisova ancestral allele"
string feature; "Ensembl Transcript ID or Regulatory Region ID
or ID of TFB profile from JASPAR or TRANSFAC"
string gene; "Ensembl Gene ID"
string extra; "Extra info: for coding genes, Ensembl Protein ID and/or HGNC;
for Regulatory Motifs, scores & matrix ID"
string consequence; "Variant Effect Predictor (VEP) consequence term"
string cdnaPosition; "Offset in transcript, if applicable"
string cdsPosition; "Offset in coding sequence (CDS), if applicable"
string protPosition; "Offset in protein sequence, if applicable"
string aminoAcids; "Amino acid change, if applicable"
string codons; "Codon change, if applicable"
string humanAl; "Modern human fixed (or major) allele on positive strand"
string denAl; "Denisova (ancestral) allele"
string chimpAl; "Chimpanzee ancestral allele"
string gorAl; "Gorilla ancestral allele"
string orangAl; "Orangutan ancestral allele"
string denZyg; "Denisova zygosity of ancestral allele (homozygous/heterozygous)"
string dbSNP; "dbSNP rs ID, if available"
float tgpFreq; "1000 Genomes Project frequency of modern human allele"
string flag; "Flag(s): CpG if in CpG island; RM if in repeat masked region;
LowQual if conflicting GATK calls; SysErr if prone to systematic errors"
char geneStrand; "Gene strand: '+' or '-', if applicable; otherwise '.'"
)
< ? ? @ @x chr1 =Cchr10
chr11 4 chr12 jchr13
VZchr14 $fchr15 @chr16 Abchr17 chr18 @]chr19 <chr2 ~chr20 pchr21 ggchr22 vchr3 chr4 ddchr5 <
chr6 ;3
chr7 gC| chr8 vVchr9 jchrX =A < x=o#U$$PD2%zm,#ܢ]KCD@ J
bkXO@(wfWXqry|{st:}y({3Jn_NzK~ͤvzjʝj,N'p8dru9ߛ_%VK"qeɄ,E$1s$ǝ%r2fRa2kXV_8.K2 %2[L٢ h/b I߬IgDM+RN:"8*#R3-'흗 ei%d̳_3 苝kԗ8tTzcvkFPBK|x`4JM5i6/