##maf version=1 scoring=autoMZ.v1 a score=11034.000000 s hg19.chr21_gl000210_random 0 29 + 27682 AAAAGAACAGCTGGCCTGGGCTTGCTGCT s rheMac2.chr3 3434128 29 + 196418989 AAAAGAACAGCTGGCGTGGGCTTGCTGCT i rheMac2.chr3 N 0 C 0 s ponAbe2.chr21 3698332 29 - 48394510 AAAAGAACAGCTGGCCTGGGCTTGCTACT i ponAbe2.chr21 N 0 C 0 s panTro2.chr21 3556179 29 - 46489110 AAAAGAACAGCTGGCCTGGGCTTGCTGCT i panTro2.chr21 N 0 C 0 s felCat3.scaffold_165875 334328 1 - 430351 A---------------------------- i felCat3.scaffold_165875 N 0 I 17247 a score=68254.000000 s hg19.chr21_gl000210_random 29 168 + 27682 GGGATGC-GGGTGGGGCTCTGGGGGGG-------AATTAGCAAGGCTTTGAAAAGGGTCTTGAATGGACAGGGATGCCCATAATCGGGAAGCAACTTCAGTGGAAAATAAAACCTCCCGGGTAGCTTGCCAAG--CAGAAG-CAGGAGATGAAGGTCGTTT--TGTGTGCACGCCATGGCT s rheMac2.chr3 3434157 169 + 196418989 GGGATGC-GGGTGGGGCTCTGGGGAGC-------CATTAGCAGGGCTTT-AAAAGGGTCTTGAATGGACAGGGACTCTCACAATCGGGAAGCACCTTCGGTGGAAAATAAAACCTCCTGGGTAGCTTGCCAAG--CAGAAG-CAGGAGATGAAGGTCGTCTTGTGTGTGCACACCGTGGCT i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3698361 160 - 48394510 GGGATGTGGGGGGGGGCTCTGGGGGGC--------ATTAGC-AGGCTTTGAAAAGGG-------TNNNNNNNNNNGCCCATAATCGGGAAGCACCTTCAGTGACCAAGAAAACCTCCCGGGTAGCTTGCCAAG--CAGAAG-CAGGAGATGAAGGTAGTTT--TGTGTGTACACCATGGCT i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3556208 168 - 46489110 GGGATGC-GGGTGGGGCTCTGGGGGGC-------AATTAGCAAGGCTTTGAAAAGGGTCTTGAATGGACAGGGATGCCCATAATCGGGAAGCACCTTCAGTGGAAAATAAAACCTCCCGGGTAGCTTGCCAAG--CAGAAG-CAGGAGATGAAGGTCGTTT--TGTGCGCACGCCATGGCT i panTro2.chr21 C 0 C 0 s danRer6.Zv8_NA5719 4612 169 - 28660 GGGAGAG-ATGTGGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCCAGGGGGAACCCAGGGGCCTCTACT------GCAAGTCCAGGGAGAGATATGGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCA-----AGGGAGCACCCTGGGGCC i danRer6.Zv8_NA5719 N 0 C 0 e felCat3.scaffold_165875 334329 17247 - 430351 I a score=123292.000000 s hg19.chr21_gl000210_random 197 156 + 27682 CCCAGCCTGGGGGTCCAAGGCCA---GTGTGCC----AGAAACTGCCTGGAAACTGCAAACACAATGGGACCCACCAGGGAGGACACCCC---CTCTCCA----GGGCCAAGGGCCAGCAGGGAAGTCCCAGCTGCAGTAAGGTTTCCAGTGGGGCC---TGCTCC-----AGAGGAA- s rheMac2.chr3 3434326 145 + 196418989 CCCAGCGTGGGGGGCCAAGGTCA---GTGTG---------------CTGGAAACTGCAAACACAATAGGACCCACCAGGGAGGACACCCC---CTGTCCA----GGGCCAAGGGCCAGCAGGGAAGTCCTGGTTGCAGTAAGGTTTCCAGTGGGGCC---TGCTCC-----AGAGGAA- i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3698521 156 - 48394510 TCCAGCCTGGGGGTCCAAGGCCA---GTGTGCC----AGAAACTGCCTGGATACTGCAAACACAATGGGACCCACCAGGGAGGACACCCC---CTCTCCA----GGGCCAAGGGCCAGCAGGGAAGTCCCAGCTGCAGTAAGGTTTCCGGTGGGGTC---TGCTCC-----AGAGGAA- i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0146136 4 156 + 943 CCCAGCCTGGGGGTCCAAGGCCA---GTGTGCC----AGAAACTGCCTGGAAACTGCAAACACGATGGGACCCACCAGGGAGGACACCCC---CTCTCCA----GGGCCAAGGGCCAGCAGGGAAGTCCCAGCTGCAGTAAGGTTTCCAGTGGGGCC---TGCTCC-----AGAGGAA- i gorGor1.Supercontig_0146136 N 0 C 0 s panTro2.chr21 3556376 155 - 46489110 CCCAGCCTGGGGGTCCAAGGCCA---GTGTGCC----AGAAACTGCCTGTAAACTGCAAACACAATGGGACCCACCAGGGAG-ACACCCC---CTCTCCA----GGGCCAAGGGCCAGCAGGGAAGTCCCAGCTGCAGTAAGGTTTCCAGTGGGGCC---TGCTCC-----AGAGGAA- i panTro2.chr21 C 0 C 0 s danRer6.Zv8_NA5719 4781 166 - 28660 TCTA--CTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCCAGGGGG--CACCCTGGGCTCTCTACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGT------AGCTTGC---TGGGGTCAGATGCCCCTATGTGGAGGGCC i danRer6.Zv8_NA5719 C 0 C 0 e felCat3.scaffold_165875 334329 17247 - 430351 I a score=166412.000000 s hg19.chr21_gl000210_random 353 191 + 27682 AAGGGAGACCCT---CCCTGATCTGAAGGTTCAAGTTCATTGCCAGGAAG-CCGCCCCCCT---CAACCCGCCTGAGCTTGTGGGAGACCCTCC-----------CAAGGCAGCCATGGGGGCCTCTCACACCGGCCCCAAAACAGC--GTCAGGAAGGAGCTACTGAAATCAGGCGGGTCTCCAGGGAGGAG-ACGCCCT---------GG-CCACTGGGC s micMur1.scaffold_20872 5 188 + 14781 AAGGGGGGAGCA---CCCGACCTTGGAGATTCCGGTCCAGCTCCAGGAAA-CCTGCCCCCT---CGGCCTG-CTGAGGTTCCGGAAGAGCCCCAGGCGGGTGGGGGAGGACAGCGA-GGGAGCCTCTTACTCAGGCCCTAGCCC---------------AGCCAGAGAGAGCAGGCGGCGCCCCGGGGAGAGG-GTGTCTC---------GGCCCACGGGGT i micMur1.scaffold_20872 N 0 C 0 s rheMac2.chr3 3434471 191 + 196418989 AAGGGAGACCCT----CCTGACCTGAAGGTTCAAGTTCAACTCTGGGAAG-CCCGTCCCCT---CGTCCTGCCTGAGCTTGTGAGAGACCCTCC-----------AAAGGCAGTCATGGGGGCCTCTCACACAGGCCCCAACGCAGC--GTCCCCAAGGAGCTACTGAAATCAGGTGGGTCTCCAGGGAGGGGAAAGCCCT---------GG-CCACTGGGC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3698677 192 - 48394510 AAGGGAGACCCT---CCCTGACCCGAAGGTTCAAGTTCAATGCCGGGAAGCCCACCCCCCT---CAACCTGCCTGAGCTTGTGGGAGACCCTCC-----------CAAGGCAGCCATGGGGGCCTCTCACACCAGCCCCAAAACAGC--GTCAGGAAGGAGCTACTGAAATCAGGTGGGTCTCCACGGAGGGG-ATGCCCT---------GG-CCACTGGGC i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0146136 160 192 + 943 AAGGGAGACCCT---CCCTGACCTGAAGGTTCCAGTTCAATGCCAGGAAGCCCGCCCCCCT---CAACCTGCCTNAGCTTGTGGGAGACCCTCC-----------CAAGGCAGCCATGGGGGTCTCTCACACCAGCCCCAAAACAGC--GTCAGGAAGGAGCTACTGAAATCAGGCGGGTCTCCAGGGAGGAG-ACGCCCT---------GG-CCGCTGGGC i gorGor1.Supercontig_0146136 C 0 C 0 s panTro2.chr21 3556531 191 - 46489110 AAGGGAGACCCT---CCCTGACCTGAAGGTTCAAGTTCATTGCCAGGAAG-CCGCCCCCCT---CAACCCGCCTGAGCTTGTGGGAGACCCTCC-----------CAAGGCAGCCATGGGGGCCTCTCACACCGGCCCCAAAACAGC--GTCAGGAAGGAGCTACTGAAATCAGGCGGGTCTCCAGGGAGGAG-ACGCCCT---------GG-CCACTGGGC i panTro2.chr21 C 0 C 0 s danRer6.Zv8_NA5719 4947 191 - 28660 AGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGG--------AGAGAG-GTGGACCCCTGGGTAGCTTG-CTGGGGT--CAGAGGCCCCTAG-----------TTGGAGGGCCAGGGGG------CACCCTGGAGCCTATACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTGGGGTCAG-AGGCCCCTAGGCGGGGGG-TCACGGGGC i danRer6.Zv8_NA5719 C 0 I 787 e felCat3.scaffold_165875 334329 17247 - 430351 I a score=535583.000000 s hg19.chr21_gl000210_random 544 545 + 27682 CTTTGCCAGATGCTATTGCTTTGAAAATGGCCCAGACTCAATCTGAGAAGTGTCACTGGCTTCACCAAGAGGAAGGTGACCCACGTCTCCAGGCTCTAGTTGAATCATTTCTGGAAACTGGGTGA------------------------------------ATGCTCCTTATAA-------------------------------------------------------------------------------------ATGAGCAAAATCTGAAATCCTAAATTAAGTT--ATTCTTAAAAGAACACTGCCACATCAATTTCTGATACAGTTATTCATTGCTCAATAAC---------AAACGACTCCAGAAC--------------------------------------------------AGATTGACTTGGG---GGTTCTCCTGCTTCCACAGTGCCACTGGGTGCAGGGATGGTTGGAAGGtcccaaatggcctcactcctacagc------------------agctcagctgggctgctggtgggaggcctggtcctccactgactgggcctctccatgtggctgcttggactccctcacagtatggcagccaggttcccatctgcaggaagtggaagcctagttttcttaaga--tctgggtgtggaaatctcaggatgtcacttctgctgcattgttttagtcaaagccattaatggggaa---------tccaggatcagggattta s micMur1.scaffold_20872 193 709 + 14781 CTTTCCCGGATGTCATTTCCCTGAAAATGGCTCAG-CTCAGCAGGAGAAGAGTCACTGCCTTAAAAGTGGGGAAGGTTACCCAGACCTCCGCTTTCTAGCTGAATCAGTGCTGGAAACTGGGCGGTGCTCTCTATATGAAGCTTCACTAGCAAAtttttttatgctttttttgagacagcgtccgctctgctgcccggactagagtgccgtggcgtcggcctcgctcacagcaacctcagactcctgggctcaagcATCACTAGCAAAATCTGAAATCGCAAATTAAGTTACAATTTTAAAAGAGCGTTGCCACGTCAATTTCTGTTTCAGTGATCCAGGACTCAGTAACTTGGACTAAAAACAGCCACTCACT---------------------------------GTCCTTCCCAGCGCTGTGGGTTGACTGGGGCTCAGGTCTCC----CCCACGGTGCCAAT-GGTGTGGGATTGG-TGGAGGGTCCCCCGTGGCCAGGCCCCTGCAGTGgctcgctggcagccacgggctcggcttagctgtcggcggcagccctggttctcctctgagt-ggcctctccacgcggccgcctggacttccccacagcgtggcggccgggttccaagaagcaggaagcagaagcccagtttccttgaga--cctgggcttggcggtct---gaggtcacctctgctgcg----tttggtcaaagccgggcgcgggggctgcggggcttccaggagtggggactta i micMur1.scaffold_20872 C 0 I 351 s rheMac2.chr3 3434662 588 + 196418989 CTTTGACAGATGCTGTTGCTGTGAAAATGGCCCAGACTCAATCCGAGAAGAGTCACTGGCTTCACAGTGAGGAAGGTGACCCACGTCTCCAGGCTCTGGTTGAATCATTTCTGGAAACTGGGCGA------------------------------------ACACTCCTTACAAG----------------------------------------------------------------------TGGGCT------TCATGAGCAAAATCTGAAATCCTAAATTAAGTTACATTCTTAAAAGAACACTGCCACATCAATTTCtgattcggttattcactgctcaataac---------aaacaactccagaactcaatgactagggggttaaaacaaccgtttcttatccttcccaatcctgtggattgacttggg---ggttctcctgctcccagagtgctggtgggtgcgggga------------------tggcctcactcctacagt------------------agctcagctgggctgctggtgggaggcctggtcctccgcagactgggcctctccatgtggctgcttggactccctcacagtatggcggccagcttcccatctgccggaagtggaagcccagttttcttaaga--tctgagtgtggaaatctcaggatgtcacttctgctgcattgttttagtcaaagccatgaacggggaa---------tccaggagcggagattta i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3698869 556 - 48394510 CTTTGCCAGAGGCTATTGCTTTGAAAACGGCCCAGACTCAATCTGAGAAGAGTCACTGGCTTCACCAAGAGGAGGGTGACCCACGTCTCCAGGCTCTAGTTGAATCATTTCTAGAAACTGGGTGA------------------------------------ATGCTCCTTATAAA----------------------------------------------------------------------TGGGCT------TCATGAGCAAAATCTGAAATCCTAAATTAAGTT--ATTCTTAAAAGAACACTGCCACATCAATTTCTGATTCAGTTATTCATTGCTCAATAAC---------AAACGACTCCAGAAC--------------------------------------------------AGATTGACTTGGG---GGTTCTCCTGCTTCCACAGTGCCACTGGGTGCGGGGATGGTTAGAAGGTCACaaatggcctcactcctacagt------------------agctcagctgggctgctggtgggaagcctggtcctctgttgactgggcctctccatgtggctgcttggactccctcacagtgtggcggccgggttcccatctgcaggaagtggaatcctagttttctaaagatctctgggtgtggaaatctcaggatgtcacttctgctgcattgttttagtcaaagccattaatggagaa---------tccaggagtggggattca i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0146136 352 545 + 943 CTTTGCCAGATGCTATTGCTTTGAAAATGGCCCAGACTCAATCTGAGAAGAGTCACTGGCTTCACCAAGAGGAAGGTGATCCACGTCTCCAGGCTCTAGTTGAATCATTTCTGGAAACTGGGTGA------------------------------------ATGCTCCTTATAA-------------------------------------------------------------------------------------ANGAGCAAAATCTGAAATCCTAAATTAAGTT--ATTCTTAAAAGAACACTGCCACATCAATTTCTGATACAGTTATTCGTTGCTCAATAAC---------AAACGACTCCAGAAC--------------------------------------------------AGATTGACTTGGG---GGTTCTCCTGCTTCCACAGTGCCACTGGGTGCGGGGATggttggaaggtcccaagtggcctcactcctacagc------------------ggctcagctgggctgctggtgggaggcctggtcctccgctgactgggcctctccatgtggctgcttggactccctcgcagtatggcggccagattcccatctgcaggaagtggaagcctagttttcttaaga--tctgggggtggaaatctcaggatgtcacttctgctgcattattttagtcaaagccattaatggggaa---------tccaggagcggggattta i gorGor1.Supercontig_0146136 C 0 C 0 s panTro2.chr21 3556722 545 - 46489110 CTTTGCCAGATGCTATTGCTTTGAAAATGGCCCAGACTCAATCTGAAAAGAGTCACTGGCTTCACCAAGAGGAAGGTGACCCACGTCTCCAGGCTCTAGTTGAATCATTTCTGGAAACTGGGTGA------------------------------------ATGCTCCTTATAA-------------------------------------------------------------------------------------ATGAGCAAAATCTGAAATCCTAAATTAAGTT--ATTCTTAAAAGAACACTGCCACATCAATTTCTGATACAGTTATTCATTGCTCAATAAC---------AAACGACTCCAGAAC--------------------------------------------------AGATTGACTTGGG---GGTTCTCCTGCTTCCACAGTGCCACTGGGTGCGGGGATGGTTGGAAGGtcccaaatggcctcactcctacagc------------------agctcagctgggctgctggtgggaggcctggtcctccgctgactgggcctctccatgtggctgcttggactccctcacagtatggcagccaggttcccatctgcaggaagtggaagcctagttttcttaaga--tctgggtgtggaaatctcaggatgtcacttctgctgcattgttttagtcaaagccattaatggggaa---------tccaggagcagggattta i panTro2.chr21 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=38305.000000 s hg19.chr21_gl000210_random 1089 46 + 27682 cactctgtctctcggtgtgaggggcagtatgcagttgtgctgggga s panTro2.chr21 3557267 46 - 46489110 cactctgtctctcggtgtgaggggcagtatgcagttgtgctgggga i panTro2.chr21 C 0 C 0 s gorGor1.Supercontig_0146136 897 46 + 943 cactctgtctctcngtgtgaggggCAGTATGCAGTTGTGCTGGGGA i gorGor1.Supercontig_0146136 C 0 N 0 s ponAbe2.chr21 3699425 46 - 48394510 cactctgtctctcggtgtgaggggcagtatgcagttgtgctgcgaa i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 3435250 46 + 196418989 tactctatctctcagtgtgaggggCAGTCTGCGGTTGCACTGGGGA i rheMac2.chr3 C 0 C 0 e micMur1.scaffold_20872 902 351 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=25512.000000 s hg19.chr21_gl000210_random 1135 50 + 27682 gggagaattggtagggccatctttgATGACCACGATACTATAAGCCTGTG s rheMac2.chr3 3435296 50 + 196418989 GGGAGAATTGAGGGGGCCGTCTTTGATGACCACAATACTATCAGCCTGTG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3699471 50 - 48394510 gggagaattggtggggccatctttgatgaccacaatACTATCAGCCTGTG i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3557313 50 - 46489110 gggagaattggtagggccatctttgatgaccacaatACTATAAGCCTGTG i panTro2.chr21 C 0 C 0 e micMur1.scaffold_20872 902 351 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=112925.000000 s hg19.chr21_gl000210_random 1185 186 + 27682 TTCATGCAGAACCACCTTGCCACACTGCCCAGGGCCAGTGTGCAAAGACA-------------------------AAGGT-----------------------AAGTGTGTTGGGAGAGTCTTAGAGACAGGTGCCGAGTGCAAACCTGCCTCTCGGTGCTCAGGTACCTGGGCCCCTGCCAGGTGAGATGGCAGACCGTGCCCTGCT--GTCCTTCAGAGGCTTCTGGGCCTTTC s micMur1.scaffold_20872 1253 229 + 14781 TGTGTGCGGAGCTGCCCGCGGGCACTGCAGAGGGGAGGATTGCGGGGCCATCTCTGACTGCCACCGTGTTACCACGAGGTGTCCTTGCCCCACTGCCCAGCACAAGCCCGCCGAGTGGAATTTGTAGACGCGTGCTGAGCGCAGGCCTGCCTCTCAGAGCTCAGGC-CCCGGGCCCCTGCCAGGTGAGGTGACA----GTGCCCCGCCAGATTCTTTAGGGGCTGCCAAGGCCT-- i micMur1.scaffold_20872 I 351 C 0 s rheMac2.chr3 3435346 186 + 196418989 TCTGTGCAGAACCATCTTGCCACACTGCCCAGGGCCGGTGTGCAAAGACA-------------------------GAGGT-----------------------AAGTGTGTTGGGGGAGCCTTCGAGACAGGTGCTGGGTGCAAACCTGCCTCTCGGTGATCAGGTACCTGGGCCCCTGCCAGGTGAGAGGGCAGATGGTGCCCTGCT--GTCCTTCAGAGGCTACTGGACCTTTC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3699521 186 - 48394510 TCCGTGCAGAACCACCTTGCCACACTGCCCAGGGCCAGTGTGCAAAGACA-------------------------GAGGT-----------------------AAGTGTGTTGGGAGAGTCTTAGAGACAGGTGCCGAGTGCAAACCTGCCTCTCAGTGCTCAGGTACCTGGGCCCCTGCCAGGTGAGATGGCAGACAGTGCCCTGCT--GTCCTTCAGAGGCTTCTGAGCCTTTC i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3557363 186 - 46489110 TCCATGCAGAACCACCTTGCCACACTGCCCAGGGCCAGTGTGCAAAGACA-------------------------AAGGT-----------------------AAGTGTGTTGGGAGAGTCTTAGAGACAGGTGCCGAGTGCAAACCTGCCTCTCGGTGCTCAGGTACCTGGGCCCCTGCCAGGTGAGATGGCAGACCGTGCCCTGCT--GTCCTTCAGAGGCTTCTGGGCCTTTC i panTro2.chr21 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=226779.000000 s hg19.chr21_gl000210_random 1371 330 + 27682 CCTCTCTCTGTA-CCATCTCTATCCATCTCATGGGCCTAGGATCTGTAGAGCTGG--GACCTTCTCCAT-CACCAC--TGCTGTGGGAGCTCC--TTCCCACCAGACAGGCTCCCAGAAAGCCCTGGCAAGGCTGATCAGTTGGTGGGAATCCACCTGCAGGTCCAGAAGGGGGACACCAAAGTCAAGCCCTATTGATTTTTGCCTCTATCTGTAAGCTGCAGAGTGGAGCACCCTGCCCTCT----CCACCCCATGTGG--AAACCCTCCCATCATTTCACCTCCCTCCCCACCCCAAGCTCCAAACAAATCCTGTGCCTTGGTCTACGATGAGGAGGGGGGA s vicPac1.scaffold_110645 57 318 + 1638 CTCCTCCCTGCA-GGGTCTCCATCAGT-TGGTGGACCTGGGGACTGGAAAAGCAAACGTCCTTTTCAATCCACCAAGTTCCCACAAGAGCGCCCGTCCCCATCT----------------GCCCTGGCAAAGTGGACGGGGCAGTAGGAAGTT-CTTGATGGGGCAGAGCGGGGAGGCCAGAGGTGGGTCCCAGTCATTTCTGCCTTTACGTCTAGGCCCAGGAGCCTAGCACCCAGCCCCTTCTACCCATCCCACGGTGCAAAACCCTCCCATCTTTGCAGCTCCCTCCCAACCCTGGCCGGCAAACCAACCCAGGGCACTGGCCTACAGTGGGGG------- i vicPac1.scaffold_110645 N 0 C 0 s micMur1.scaffold_20872 1482 292 + 14781 --CTTCTCTGCAGCCACGTCCGTTGGTCTAATAGA---------TGCAGAGCCAC--GTCCTTCTCACA-CACCACA-TCCTGTGAGAGCTCC---TCCTACTCGCCCCTC-CCCAGAAGGCCCTGG--------------------GAACCCTCCTGCAGGGGTGGAGGGGGAAGACCAACGCCAAGCCCTGGCGACCCCCACCTCTACCTGTATGC-GGGGAGCCCAGTGCCCAGCACCCC----ACGCACAACG--G--AAACTCCCTCATCCTC---CCTCCCTCCCCACTGCAGCCTCCCAGCAAGTCCCGTGCCCCG-TCTAAGACTGGGCAGGCGCA i micMur1.scaffold_20872 C 0 C 0 s rheMac2.chr3 3435532 330 + 196418989 ACTCTCCCTGTAGCCATCTGTATCTGTCTCATGGACCTAGGATCTGCAGAGCTGG--GACCTTCTCCAT-CACCAC--TGCTGTGGGAGCTCC--TTCCCACCCAACAGGCTCCCAGAAAGCCCTGGCAAGGCTGATCAGTTGGTGGGAATCCATCTGCAGGGCCAGAGCAGGGAGACCAAAGTCAAGCTCTACTGACTTTTGCCTCTGCCTGTAGGCTGGGGAGTGGAGCACCCCGCCCTCT----CCACCCCACGTAG--AAACCCTCCCACCATTCCACCTCCCTCCCCACCCCAGGCTCCAAACAAATCCTGTGCCTTGATCTAAGACGAGGA-CGGGGA i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 3699707 330 - 48394510 CCTCTCTCTGTA-CCTTCTCTATCCGTCTCATGGGCCTAGGATCTGTAGAGCTGG--GACCTTCTCCAT-CACCAC--TGCTGTGGGAGCTCC--TTCCCACCCGACAGGCTCCCAGAAAGCCCTGGCAAGGCTGATCAGTTGGTGAGAATCCACCTGCAGGGCCAGAAGGGGGAGACCAAAGTCAAGCCCTATTGACTTTTGCCTCTATCTGTAGGCTGCAGAGTGGAGCATCCCGCCCTCT----CCACCCCACGTGG--AAACCCTCCCATCATTCCACCTCCCTCCCCACCCCAGGCTCCAAACAAATCCTGTGCCTTGGTCTACGATGAGGAGTGGGGA i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3557549 330 - 46489110 CCTCTCTCTGTA-CCATCTCTATCCATCTCATGGGCCTAGGATCTGTAGAGCTGG--GACCTTCTCCAT-CACCAC--TGTTGTGGGAGCTCC--TTCCCACCCGACAGGCTCCCAGAAAGCCCTGGCAAGGCTGATCAGTTGGTGGGAATCCACCTGCAGGTCCAGAAGGGGGACACCAAAGTCAAGCCCTATTGACTTTTCCCTCTATCTGTAGGCTGCAGAGTGGAGCACCCCGCCCTCT----CCACCCCATGTGG--AAACCCTCCCATCATTCCACCTCCCTCCCCACCCCAGGCTCCAAACAAATCCTGTGCCTTGGTCTACGATGAGGAGGGGGGA i panTro2.chr21 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=264528.000000 s hg19.chr21_gl000210_random 1701 298 + 27682 GGAGTATTT--AATTTGGTAATAAACTTGGATCAGGTCCTGCTCCTGAAAACAGAGCCTGCCTCCATCTGCACTTGGCCATATACACCCAGCCTTAGGATTTGGGGGCCCAGCTCAGGA-GGGAAGGGGATAGGCAGCCCCTGA-GCCCTGGTGAGACACTCATGGTGTGGCC---ATCTAGAGAGGGTGCTCGCCGAAGTCTAGGGTCCAGAGTGTAAATGAGCAGTCACTAAGGTTTAGAACAgtatctagaccttggaaa-tgtatgcagcattcagcaacaagccatttaacttccagagat s panTro2.chr21 3557879 298 - 46489110 GGAGTATTT--AATTTGGTAACAAACTTGGATCAGGTCCTGCTCCTGAAAACAGAGCCTGCCTCCATCTGCACTTGGCCATATACACCCAGCCTTAGGATTTGGGGGCCCAGCTCAGGG-GGGAAGGGGATAGGCAGCCCCTGA-GCCCTGGTGAGACATTCATGGTGTGGCC---ATCTAGAGAGGGTGCTCACCGAAGTCTAGGGCCCAGAGTGTAAATGAGCAGTCACTAAGGTTTAGAACAGTATCTAGACCTTGGAAA-TGTATGCAGCATTCAGCAACAAGCCATTTAACTTCCAGAGAT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3700037 298 - 48394510 GGAGTATTT--AATTTGGTAATAAACTTGGATCAGGTCCTGCTCCTGAAAATGGAGCCTGCCTCCATCTGCACTTGGCCATATACACCCAGCCTTAGGATTTGGGGGCCCAGCTGAGGA-GGGAAGGGGATAGGCAGCCCCTGA-GCCCTGGTGAGACACTCATGGTGTGGCC---ATCTAGAGAGGGTGCTCACCAAAGTCTAGGGTCCAGAATGTAAACGAGCAGTCACTAAGGTTTAGAACAGTGTCTAGACCTTGGAAA-TATATGCAGCAGTTAGCAACAAGCCATTTAACTTCCAGAGAT i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 3435862 299 + 196418989 GGAGTATTT--AATTTGGTAATAAACTTGGATCAGGTCCTGCTCCTGAACACAGAGCCTGTCCCCATCTGCACTTGGCCATACACACCCAGCCTTAGGATTTGGGGGCCCAGCTCAGGA-GGGAAGGGGGTAGACAGCCCCTGAGGCCCTGGTAAGACACTCATGGTATGGCC---ATCTAGAGAAGTTGCTCACCCAAGTCTAGAGTCCAGAATGTAAATCAGCAGTCACTAAGGTTTAGAACAGTATCTAGACCTTGGAAA-TGTATGCAGCATTTAGCAACAAGCCATTTAACTTCCAGAGAC i rheMac2.chr3 C 0 C 0 s micMur1.scaffold_20872 1774 266 + 14781 GGAGCCCGT--AGTCTGGTACCAGCCCCGGCTCCAGCCCTGCTCCTGGAAGTGGAACCTACGCCCCTCTGCATGAGGT--------CCCGGCC--------TGGGGG---AAGTAGGGG-GTGGGAAGGCCGGGCAGCTCCCAG-TGCCTGGAGAGAGGCTCACGGTTCTGGG---ATCT-GAGCGGCC-CTTACGGAAGCCCAGAGTCCGGAAC-----------GTCACTAAGGTCTAGAACGGCGTGCAGACCTTGGAAA-CGCAGGCAGCATTTAGCGCCAAGCCGGTGCACGTCTAGGGGC i micMur1.scaffold_20872 C 0 C 0 s vicPac1.scaffold_110645 375 296 + 1638 ---CCACTT--CCTTGGGTAACAGGCTTGGATCCAGGGCTGCTCTGGAGAGCTCAGCTTACGCCTATCTGCACGAGGTCATCCATG-CAGGTCTCAGGATTTGGGGGCCCAGCTCAGGGTGGGGAGGGGGTGGGCGGGTCCCAG-TGTCTGCTGCGATGCCCATGGTACTACTGTGGTCTAGAGACAGTCCCAGC--AAGTCTGGAGTCTGGGAGGTAAATGAATGGTCACTAAGGTC-AAAACAGTACTTAGACCCTGTAAATTGTAAGCAGCATTTAGCCACCAGCCACTTCCCTTGCAGGGAT i vicPac1.scaffold_110645 C 0 C 0 s echTel1.scaffold_231902 3973 271 + 6411 GGAGCATTTCCCATTTGGTGATGAGCTTGGACCCAGCTCTGCTCCTTCCGGCTGAATCTGCTCCCATCTGCACGTGGTCAACCTCA--TGGCCTTGGGG---AGGGGCCCCGCCCAGGA-GGAGGGCCAATGGGCAACTCCAGG-TGCTGAGAGAGCCGCTCA----------------TAGACAGGGTCCTTGTAACAGCCTGGAGTCAAGGGATCCAACTGACAGTCACAGAGAT--------GCTTCCAAGCCTTGGGAA-TGTGTGCATCACCGA---ACAAGCCATTTCACTGCGGGGGGT i echTel1.scaffold_231902 N 0 N 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=225230.000000 s hg19.chr21_gl000210_random 1999 327 + 27682 tgacctctaagcaaaatattggagctgtgtgcaaagacctcttgtatacagtgatattcTGGGTGACATTTGACATTCTTTCTGCAAATGCCTGAGTCATGCCCAGTTCATGCTTGTGAGGGGCACAAAACAGTGAACAA-AGTCAACAGCTGTGTGCCTGTCCCGGGACAGAGAGCTC-GTGTTATTTGCTTTTGCAAATGATTAGATAAAATAGATTTGACGAAGATAGAGCGCGCA-----CAGCCAGCCCTC-------C-CCTGCCCCAGCCTATTGAACGCTTGCATTTTCTCCAGACCTCAGCCCAGACATCACATGGGTGGGCACTCTCCCTG-A s panTro2.chr21 3558177 328 - 46489110 TGACCTCTAAGCAAAATATTGGAGCTGTGTGCAAAGACCTCTTGTATACAGTGATATTCTGGGTGACATTTGACTTTCTTTCTGCAAATGCCTGAGTCATGCCCAGTTCATGCTTGTGAGGGGCACAAAACAGTGAACAACAGTCAACAGCTGTGTCCCTGTCCCGGGACAGAGAGCTC-GTGTTATTTGCTTTTGCAAATGATTAGATAAAATAGATTTGACGAAGATAGAGCGCGCA-----CAGCCAGCCCTC-------C-CCTGCCCCAGCCTATTGAACGCTTGCATTTTCTCCAGACCTCAGCCCAGACATCACATGGGTGGGCACCCTCCCTG-A i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3700335 329 - 48394510 TGACCTCTAAGCAAAATATTGGAGCTGTGTGCAAAGACCTCTTGTATACAGTGATATTCTGGGTGACATTTGCCATTCTTTCTGCAAATGCCTGAGTCATGCCCAGTTCATGCTTGTGAGGGGCACAAAACAGTGAACAACAGTGAACAGCTGTGTCCCTGTCCCGGGACAGAGAGCTC-GTGTTATTTGCTTTTGCAGATGATTAGATAAAATAGATTTGACGAAGATAGAGTGCGCA-----CAGCCAGCCCTC-------C-CCTGCCCCAGCCTACTGAATGCTTGCATTTTCTCCGGACCTCAGCCCAGACATCACACGGGTGGGCACCCTCCCTGAA i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 3436161 323 + 196418989 TGACCCCTAAGCAAAATATTGGAGCTGTGTGCAAAGACCTCCTGTATACAGTGATATTCTGTGTGACATTTGCCATTCTTTCTGCAAATGCCTGAGTCATGCCCAGTTCATGCTTGTGAGGGGCACAAAACAGTAAGCAACAGTGAACAGTTGTGTCCCTGTCCCGGGACAGAGAGCTC-GTGTTATTTGCTTTTGCAAATCATTAGATAAATTAGATTTGACCAAGATAGAACGTGCA-----CAGCTAGCCCTC-------C-ACT------GCCTACTGAATGCTTACATTTTCTCCAGACCTCAGCCCAGACATCACACCGGTGGGCATCCTCcctgag i rheMac2.chr3 C 0 C 0 s micMur1.scaffold_20872 2040 295 + 14781 CGA-CTCTAAGCGACACTTCAAAGGGGCATG-AAGGCGCTCTCGTGCACACAGGTACTCCGTGGGGCGTTTGCCGATCTCTCTGCAGATGCCCAAGGCAGGCTCAGCTCGTGCCAGTGA-GGGCATGGAAGAGTGAGCAACGGCGAACAAC----------------------GTGCCC-GTGTTAGCTGCACTCGCAAATAGTTAG---AAATAAACTTGACCGAGACGGGACTCACA-----CAGCCAGCCCCCCGGACCTC-CCCACCCTGGCTTAGTGGG------------CTCCACCACTGGGCCCAGACTCCGCTGCGGCAGGCACCCTCTCTG-A i micMur1.scaffold_20872 C 0 M 1379 s vicPac1.scaffold_110645 671 261 + 1638 TT-CATCTAAGCAAAA-ATCAAAGCTATGTGCAAAGACCTCTTGTGTGCGAAGAGATTCT--------------ATACTCT---------------------------------------------------GTGTGCAGCGG--AACAGATGTGTCCCTGCCCGGGGGAAGGGGGCTCAGTGTACCTTGAATAAGCACATGATCAG---AAATAAGCTTGGCCGAGATGGGAC-TGCACCAGCCAGCCAGCCCTC-------CGACCGCCCTGGCTT-CTGAACTTTCCCGTTTCCTCTGGACCTCAGTCCAGACAGCACGCTGGCAGGCACCTTCCCTG-A i vicPac1.scaffold_110645 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=233469.000000 s hg19.chr21_gl000210_random 2326 405 + 27682 --CCTAACACGGCTTATACTCGGGACTCTGTGTA---------------------------GTCTCGCCCACAGCACTCCT-GGTCTGTGATCAACGTGTTCATCTGTGGACCAGCTCTAAGTCCCATGGAGCAGGACCAAGTCTCGGTGACTCCA------GCCCCACCCCTAGCATTGTGCCCGC--CAGGTTCCGCAGCAGATGCACGGGTGCGGCCATGGAGTGGACACGCGCTTAAGTA---AGCC-CTGTGGGACTGGGCCCTGGGG----CTGTTTACCCACGTGCTG---CCTTATTCAGCAATTTTAAAGGAGCTGTAGGAAAAT---ACGTGTGAG-AAATGCTCATAAGATCATATCAAGGGACACAAGCCCATTATAAAACAGCAGGTACAATTTGATCGCAAGCAAAATAATATCAGTAGTATCTGTGCATTACAGAACAGactc s panTro2.chr21 3558505 404 - 46489110 --CCTAACACGGCTTATACTCGGGACTCTGTGTG---------------------------GTCTCGCCCACAGCACTCGT-GGTCTGTGATCGACGTGCTCATCTGT-GACCAGCTGTAAGTCCCATGGAGCAGGACCAAGTCTCGGTGACTCCA------GCCCCACCCCTAGCATTGTGCCCGC--CAGGTTCCGCAGCAGATGCACGGGTGCGGCCATGGAGTGGACACGTGCTTAAGTA---AGCC-CTGTGGTACTGGGCCCTGGGG----CTGTTTACCCACGTGCTG---CCTTATTCAGCAATTTTAAAGGAGCTGTAGGAAAAT---ACGTGTGAG-AAATGCTCATAGGATCATATCAAGGGAAACAAGCCCATTATAAAACAGCACATACAATTTGATGGCAAGCAAAATAATAACAGTAATATCTGTGCCTTACAGAACAGactc i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3700664 405 - 48394510 --CCTAATACGGCTTCTACTCGGGACTCTGTGTG---------------------------GTCTTGCCCACAGCACTCGT-GGTCTGTGATCAACGTGTTCATCTGTGGACCAGCTGTAAATCCCATGGAGCAGGACCAAGTCTCCGTGACTCCA------GCCCCACCCCTAGCATTGTGCCCGC--CAGGTTCCGCAGCAGACGCATAGGTGCGGCCATGGAGTGGACACGCGCTTAAGTA---AGCC-CTGTGGGACTGGGCCCTGGGG----CTGTTTACCCACGTGCTG---CCttattcagcaatttaaaaggagttgtaggaaaat---acgtgtgag-aaatgctcataagatcatatcaagggaaacaagcccattataaaacagcatgtacaatttgatcccaagcaagataataacagtaatatctgtgcattaaagaacagactc i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 3436484 411 + 196418989 --cctaatacggcttctgctcgggaccgtgtgtg---------------------------gtctcgcccacagcactcgt-ggtctgtgatcaacgtgctcatctgtggaacggctgtaagtcccacagagcaggactgagtctcggtgactccagcacgtgccccacccctagcatcgcacccgc--caGGTCCCGCAGCAGACGCACAGGTGCGGCCGTGGAGTGGACACGCGCTTAAGTA---AGCC-CTGTGGGACTGGGCCCTGGGG----CTGTTTATCCACGTGCTG---Cattattcagcaatttaaaaggagttgtaagaaaat---acatgtgaa-aaatgctcataagatcatatcaagggaaataatcccattataaaacagcatgtacaatttgatcccaaGCAAGATAATAACAGTAATATCTGTGCATTAAAGAACAGactc i rheMac2.chr3 C 0 C 0 s vicPac1.scaffold_110645 932 414 + 1638 ACCTAAACCCAGGTTCTGCCGCAGACCCAGGGTGCAGCCTCAGAGCCTCACAGCCTCACGCAGCTTGCTCACCGCACTCGTCTGCTTGTGATCAACGTGTCCTTCTGTGGGTTGACTTTGTGTCACA-----------------------------------GCCCCA-----AGCACTGGGCCTGTCACACGTCATGCAGCTGACACGCAGGGGCAGCTGTCAAAGGAATCCACGCTTAAGTAATGAGCAGCTGCATGGCTGGTCACTGAAGTCAACGGTTGATCTACCTGCTGGAATATTCTTCAGCAACTT-AAAGGAATTGTAGGAAAATATAACACGTGAGAAAACACAGACACGGTCACGTCAAGGGATGCAAAGCGGTTGTCAAGCTGTCTGTACAATTCGGTCCCAAGTCAGGTGA---CGGTGGTGCCCAAGCACTGAAGGAGGGGCCC i vicPac1.scaffold_110645 C 0 N 0 e micMur1.scaffold_20872 2335 1379 + 14781 M e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=86181.000000 s hg19.chr21_gl000210_random 2731 161 + 27682 atatcctgcttctgggaatgtaaaatgacacctcctgtgggtgcactgggaagggaaggatggtaggccaggctttggcagtttctttaaaaactaagtctattaccatgacccagcaattgtactcttgggcatttatccctaggaaataaaaacttctg s panTro2.chr21 3558909 161 - 46489110 gtatcctgcttctgggaatgtaaaatgatacctcctgtgggtgcactgggaagggaaggatggtaggccaggctttggcagtttctttaaaaactaagtctattaccatgacccagcaattgtactcttgggcatttatccctaagaaataaaaacttctg i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3701069 161 - 48394510 atatcctgcttctgggaatgtaaaatgatacctcctgtgggtgcactgggaagggaaggatggtaggccaggctttggcagtttctttaaaaactaagtctattaccatgacccagcaattgtactcttgggcatttatccctaggaaataaaaacttctg i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 3436895 161 + 196418989 atatcctgcttctgggaatgtaaaatgatactgcctgtgggtacactgggaagggaagaatggtaggccaggctttggcagtttctttaaaaactaactctattaccacagcccagcaattgcactcttgggcatttatccctaggaaataagaacttctg i rheMac2.chr3 C 0 I 30 e micMur1.scaffold_20872 2335 1379 + 14781 M e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=102774.000000 s hg19.chr21_gl000210_random 2892 376 + 27682 atcacaccgaaaagggcacacgagtgttcatgcatctttatttataacagccccaaaccggacacagccaacccagatgtccttcaccaggtgaccggctaaacacaccgtggtgtctggaatacagcggtaggaagaggtgagctactgcacacacccacctgcccgatgtcacgggcattgcactaagcaaaaaggccagtcccaaaaggtcacgttctgcctgattctgtatataccactgtctcgaaatgaccaagtgtggcactggagaacaaaggagtggttgctaggggttgaggatggttcgggggaggagaccagcaagggggagcccgagagagatagctgggtgatgggacaccctggactgggc s ponAbe2.chr21 3701230 376 - 48394510 atcacaccgaaaagggcaaacgagtgttcatgcatctttatttataacagccccaaaccggacacagccgacccagatgtccttcactaggtgaccggctaaacacatcgtagtgtctggaatacagcggtaggacgaggcgagctactgcacacacccacctgcccgatgtcacgggcattgcactaagcgaaaaggccagtcccaaaaggtcatgttctgcctgattctgtatataccactgcctcgaaatgaccaagtgtggcgctggagaacaaaggagtggttgctaggggttgaggatggttcaggggaggagaccagcaagggggagcctgagagagatagctgggtgatgggacaccctggactgggt i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3559070 376 - 46489110 atcacaccgaaaagggcacacgagtgttcatgcatctttatttataacagccccaaaccggacacagccgacccagatgtccttcaccaggtgaccggctaaacacaccgtggtgtctggaatacagcggtaggaggaggcgagctactgcacacacccacctgcccgatgtcacgggcattgcactaagcgaaaaggccagtcccaaaaggtcatgttctgcctgattctgtatataccactgtctcgaaatgaccaagtgtgccgctggagaacaaaggatcggttgctaggggttgaggatggttcgggggaggagaccagcaagggggagcccgagagaaatagctgggtgatgggacaccctggactgggc i panTro2.chr21 C 0 C 0 e micMur1.scaffold_20872 2335 1379 + 14781 M e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=171550.000000 s hg19.chr21_gl000210_random 3268 462 + 27682 ggtggcttcatgaatctacacgtgcgatcgaatggtggagaactgtgcacacatcgtacaatacccatttcctggtgtcagttagcgctatggtgacatcagcggcagctgttgcagggaaactgggtgaagggcccatgagagccctgtctgctctccttgccacttcctgtaatctgataattatttcaaagga-aaagtaaaagaa------aaaaatgctgcaaagaaagattcctaaagg-taactggatttatgtcttagtgctaatattaaactgatttttttttaaaaatccacttcatttccaatattttccatgctttctccaagcaacatggatt-acatttgaaactaaaaaataaTCaagagtgaacatt---aggcgaaagcagggatagaatctacaggagctctctggactatcgttgtaactctctgtgtttctaaaattatttccaaatgaaaagA s panTro2.chr21 3559446 462 - 46489110 ggtggcttcatgagtctacacgtGCGATCGAATGGTGGAGAACTGTGCACACatcgtacaatacccatttcctggtgtcacttagcgctatggtgacatcagcggcagctgttgcagggaaactgggtgaagggcccatgagaaccctctctgctctccttgccacttcctataatctgataattatttcaaagga-aaagtaaaagaa------aaaaaTGctgcaaagaaagattcctaaagg-taactggatttatgtcttagtgctaatattaaactgattttttttaaaaaatccacttcatttccaatattttccatgctttctccaagcaacatggatt-acatttgaaactaaaaaataaTCaagagtgaacatt---aggcgaaagcagggatagaatctacaggagctctctggactatctttgtaactctctgtgtttctaaaattatttccaaatgaaaagA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3701606 459 - 48394510 ggtgtcttcgtgaatctacacgggtgatcgaatggtggaggactgtgcacacattgtatgatgcccatttcctggtgtcgatttgtgctatggtgacatcagctgcagctgttgcagggaagctgggtgaagggcccgtgagagccctctctgctctccttgccacttcctggaatctgataattatttcaaagga-aaagtaaaagaa------aaaaatgctgcaaagaaagattcctaaagg-taactggatttatgtcttagtgctaatattaaactgatttttttt---aaatccacttcatttccaatattttccatgctttctccaagcaacatggatt-acatttgaaactaaaaaataaTCAACAgtgaacatt---aggggaaagcagggatagaatctacaggagctctctggactatctttgtaactctctgtgtttctaaaattatttccaaatgaaaagA i ponAbe2.chr21 C 0 C 0 s micMur1.scaffold_20872 3727 443 + 14781 GGTGGCTCCGTGCATCTA---ACGTGATACAGCGACGCAGAATTACGCATGCGTTGTACAATGTCCGTTTCCT-------------GTTACG-------CATCTGCGGCCGGGGCAGGGAAGCCAGGCCTGGGACCCCTGAGAGTCCTCTCCAC-CTCCACGCAACTTCCTGCGATTCTGTAAGCATGTCAAAGGACAAAGTAGAAGAAGAAAAGAAAAAGACCGAAAAGAAAGATTACAAAAGGTTAACAGGTTTTATGTCTTAGTCCTAACATGAAACTAGTTTTTTTA---ATGCCCATTGCATTTCT-CTATTTTCCGCACTTTCTCCCAGCAACACGGGTTAACACTTGTAACTAAAAAATAATCCC---TGAACACTTGGGGgggggaacgggggtaggatatatcggagcgccgtgtactatctttgcaactctgtaaatctataaaaccatttccaaataaaaagg i micMur1.scaffold_20872 M 1379 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=37435.000000 s hg19.chr21_gl000210_random 3730 146 + 27682 AAGTTTTTAggctgggtacggtggctcacacctgtaatcccagcactttgggagactgaggcaggaggatcacttaagctcaggcattcaagaccagcctgggtaacatagcgagacttcatctcaataaaaattaaat--------aaaTAAA s ponAbe2.chr21 3702065 154 - 48394510 AAGTTTTTAGTctgggtacagtggctcacacctgtaatcccagcactttgggagactgaggcaggagggtcacttgagctcaggtgttcaagaccagcctgggtaacatagcgagacttcatctcaataaaaaataaataaaCAAATAAACAAA i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3559908 150 - 46489110 AAGTTTTCAggctgggtacggtggctcacacctgtaatcccagcactttgggagactgaggcaggaggatcacttaagctcaggcattcaagaccagcctgggtaacacagcgagacttcatctcaataaaaattaaataaaC----AAATAAA i panTro2.chr21 C 0 C 0 e micMur1.scaffold_20872 4170 0 + 14781 C e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=141482.000000 s hg19.chr21_gl000210_random 3876 383 + 27682 CTTTTTTAAAAAAAGAAAAGTTCTTAAAAACAAATAGCAAATAAGATCAAATGTTGCATACGTGTAGTGAAAAGACAAAAAGTAAC-------AATAAAGTGAGAACTCTTTGCTTA--GGGGAAACTCATTAATTAGATTAGAGCAATTAAAAGAGGAAAACAAAAATATCATGAGATGTTGTGAATAAGGCATTTAAAACATTTTAAAAGTCCGGTCTCTTCATAGAGTGCATAGAGAGGGTGTTGGTGAATTTTC-TGTCCCTAGGGCAATACCTGGGTGACTAGGCATATtggattagttcgttccagctgccataacaaagaaccacacactgggtgggtggctcagacaacaaaaatgcattctcccagagtgctgggggctggagg s panTro2.chr21 3560058 383 - 46489110 CTTTTTTTAAAAAAGAAAAGTTCTTAAAAACAAATAGCAAATAAGATCAAATGTTGCATACGTGTAGTGAAAAGACAAAAAGTAAC-------AATAAAGTGAGAACTCTTTGCTTA--GGGGAAACTCATTAATTAGATTAGAGCAATTAAAAGAGGAAAACAAAAATATCATGAGATGTTGTGAATAAGGCATTTAAAACATTTTAAAAGTCCGGTCTCTTCATAGAGTGCATAGAGAGGGTGTTGGTGAATTTTC-TGTCCCTAGGGCAATACCTGGGTGACTAGGCAGATtggattagttcgttccagctgccataacaaagaaccacacactgggtgggtggctcagacaacagaaatgcattctcccagagtgctgggggctggagg i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3702219 375 - 48394510 CTTTTTTTAAAAAAGAAAAGTTCTTAAAAACAAATACCAAATAAGATCAAATGTTGCATACGTGTAGTGAAAAGACAAAAAGTAAC----------AAAGTGAGAACTCTTTGCTTA--GGGGAAACTCATTA-----ATTAGAGCAATTAAAAGAGGAAAACAAAAATATCATGAGATGTTGTGAATAAGGCATTTAAAACATTTTAAAAGTCCAGTCTCTTCATAGAGTGCATAGAGAGGATGTTGGTGAATTTTC-TGTCCCTAGGGCAATACCTGGGTGACTAGGCATATtggattagtttgttccagctgccataacacagaaccacacacttggtgggtggctcagacaacagaaatgcattctcccagagtgctgggggctggagg i ponAbe2.chr21 C 0 C 0 s micMur1.scaffold_20872 4170 362 + 14781 -ttttttta----------------gaaaaCAAATAGCAGATAAGATCAAATGTTACACAGATGTCGTGAAAAGACAAAAAATAAGCAAACTTAATAAAGTAAGAACGCTTTGCTTAGGGGGGAAAACCATTATTTAGATGAGAGCAATTAAAAGACGAAAACAAAAGACGCAAAATATGCTGTCAGCGATGCATTTAAAACAATTTTAAAGTTGAGTGCCTTCATGTATTGCATGGAGCGGGTGTTGGTGAGTCTCCGTGTCCACAGGCAGGTGTGTCGATG-CCAGCAATATTGGGCTggtctgc--------ccgcaggaaaaccccacagac----cgggacgcttaaacagcaggagtttactctcct-gtgtccgggaggctggcag i micMur1.scaffold_20872 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=56131.000000 s hg19.chr21_gl000210_random 4259 214 + 27682 ctgagatcaaggttccagcagggctggtgcctcccgaggcctctctccttggcttctagatggggtcttctccatgtgtcctcgagtggacatccctctgtgtgtgtcggtgtcctaatccagcagggctggtgcctcccgaggcctctctccttggcttctagatggtgtcttctccatgtgtccttgagtggtcatccctctgtgtgtgtcg s panTro2.chr21 3560441 214 - 46489110 ctgagatcgaggttccagcagggctggtgcctcccgaggcctctctccttggcttctagatggcgtcttctccgtgtgtcctcgagtggacatccctctgtgtgtgtcagtgtcctaatccagcagggctgatgcctcccgaggcctctctccttggcttctagatggcgtcttctccgtgtgtcctcgagtagacatccctctgtgtgtgtca i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3702594 214 - 48394510 ctgagattaaggttccagcagggctggtgcctcccgaggcctctctcctagtcttctagatggcatcttctccgtgtgtcctcgagtggtcatccctctgtgtgtgtcggtgtcctaatccagcagggctggtgcctccccaggcctctctccttggcttctagatggcgtcttctccatgtgtcctcaagtggtcatccctctgtgtgtgtcg i ponAbe2.chr21 C 0 C 0 e micMur1.scaffold_20872 4532 0 + 14781 C e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=25376.000000 s hg19.chr21_gl000210_random 4473 280 + 27682 gtgtcctaatccagcagggctggtgcctcctgagggctctctccttggcttctagatggcgtcttctccgtgtgtccttgagtggtcatccctctgtgtgtgctggtgtcctaatccagcagggctggtgcctcctgaggcctctctccttggcttctagatggcgtcttctccatgtgtccttgagtggtcatccctctgtgtgtggcggtgtcctaatccagcagggctggtgcctcccgaggcctctctccttggcttctagatggcgtcttctccg s panTro2.chr21 3560655 280 - 46489110 gtgtcctaatccagcagggctggtgcctcccgaggcctctctccttggcttctagatggcgtcttctccgtgtgtccttgagtggtcatccctctgtgtgtgctggtgtcctaatccagcagctctggtgcctcctgaggcctctctccttggcttctagatggcgtcttctccgtgtgtcctcgagtggacaaccctctgtgtgtggcggtgtcctaatccagcagggctggtgcctcccaaggcctctctccttggcttctagatggcgtcttctccg i panTro2.chr21 C 0 C 0 e micMur1.scaffold_20872 4532 0 + 14781 C e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21 3702808 0 - 48394510 C e rheMac2.chr3 3437056 30 + 196418989 I a score=0.000000 s hg19.chr21_gl000210_random 4753 136 + 27682 tgtgtccttgagtggtcatccctctgtgtgtgtcagtgtcctaatccagcagggctggtgcctcctgagggctctctccttggcttctagatggcgtcttctccgtgtgtccttgagtggtcatccctctgtgtgt e micMur1.scaffold_20872 4532 0 + 14781 C e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e panTro2.chr21 3560935 0 - 46489110 C e ponAbe2.chr21 3702808 0 - 48394510 C e rheMac2.chr3 3437056 30 + 196418989 I a score=2633.000000 s hg19.chr21_gl000210_random 4889 74 + 27682 gtcagtgtcctaatccagcagggctggtgcctcctgagggctctctccttggcttctagatggcgtcttctcca s micMur1.scaffold_20872 4532 74 + 14781 gtcaacgctggggtgcggcagggctggtttcccctgaggtttctcctcttggcccagagacagccactttgccc i micMur1.scaffold_20872 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e panTro2.chr21 3560935 0 - 46489110 C e ponAbe2.chr21 3702808 0 - 48394510 C e rheMac2.chr3 3437056 30 + 196418989 I a score=3433.000000 s hg19.chr21_gl000210_random 4963 35 + 27682 tgtgtccttgagtggtcatccctgtgtgtttgtca s panTro2.chr21 3560935 35 - 46489110 tgtgtcctcgagtggtcatccctgtgtgtttgtcg i panTro2.chr21 C 0 C 0 s micMur1.scaffold_20872 4606 24 + 14781 tgcgtcctc---------cccctgtgcatgtct-- i micMur1.scaffold_20872 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21 3702808 0 - 48394510 C e rheMac2.chr3 3437056 30 + 196418989 I a score=369555.000000 s hg19.chr21_gl000210_random 4998 1032 + 27682 gtgtcctaatccactcttcttacaaggacaccagtcagattcaattaggggccatgccaatggcctaattttaccttaatcacctctttaaggtccctacctccaaataagg--acattctgtggtgccgggggctagggctgcaacatatggacttggag-gagcacaattcggcccacaaTGATTGTCTTTCGGGTTGATGTTTTAAT---------------TATCACCTTATAGAAAACACTGAGAAAAGCAGCGAATAGGCCACATTCGAG-GACAATGATGCAAAGAAACAAAGATG-AGGTAATAATTTGAACTTAATCATTATATTTATTTATATCCCAACATTCAACAAACTTCTGGCACCAGATGGACATTCTGTGACTATTTTTGAACGATCTTATGAATGACATAAATTTGTCCTCTTTGGCTGTCTTCTCATGTGAATCCTAAATAGGTTTTCCAAGGTATACAATAATTCAGACACAGAACAAACACATTTTGGTCTAATTTGAATAATAAGAACATCTATGTTGCCCTTTCAACATGAGAACTTGGACTTACAGATCT-AGACCTTCCACTTTTCCAGGTTCCTCTTGCAAGCACTCCCCACTGGCCGGGTCTAGTTCCCAAGTTGCATGTGAAGTTAAGCCTAAATAAATACCAACAATACTGAAGGGTATTATTTTGTGATACTAGCAGTTTGGGAATAAAACATCAAGGCAccagcaattccgctccaaggtgtatacacaagagaact--gaaaacatgttcacagaaaaacttgcacatgaatgtttacggcagcattatttgtaagagccaaacagtggaaacaactcaaatatccatcaattggtgattggataaacaaaacaagatacatgcataaaatggaatatcatttatctat-aaaaagggatgaaatgttgatacatgctactatgtggatgaattctgaaaacattttactgagtaaa-aaagccacacacaaaaagccacatgttagatatgacatgcccagaacaggtagcttcatagagagaaa s micMur1.scaffold_20872 4630 999 + 14781 gtgtcctcagcccctccacc--------cacccgtcag-----------------gctggtgacctcgtttaaccttattcacctctttaagg-ccccgtccccaaattcggtcacactctgaggtgccagggtc-agggctgcagcatatggatttcgagtgaacacagttcagcccacgacaACTGTCTTTTGGGGGGATGTTTTGCTGTGGTGCCTAAGTTGCGTCACCTTGTGTTAAATACTGACGACGGCAGTGAACAGGCGACATTAGAGAGCCCCTGGTGGGAGGCGGGGGAGGGGAAGGCAGTAATTT-AGCTCTGTGGTTGTACCAATTTACGTCCCAACGTCCACCAGGCTGCCAGCACCGGGGGGACAGTCCCTGCCTGTATT----CGATGTCACGAATGACATAAGTTCCCCCTCCGTGGCTCTCTGCACGTGTGGATCCCAAAGGGGCTTTCCAAGGCGTGCAATAGTGCGGGTGCAGAAGGAACACGCTGTGCCCTAACTCACACGACGTGAGTGACCATGACGCCTTTTCAGCATGAGGACGT-------CAGATCCGACGTCTCTCGCCGTGGCGGG-TCCTCCCGTGAGCGC-CATGGCAGGGCAGGACTGACTCACAGATCACGCGTGAGGTTAAGCCCCAAGGAATCCCAACAGTCCCGAGTGGGGTCCTGCTGTCACACAAGCGGTCTGAGAATAC-ACGTCAACACAccagggattccacgcccaggaatacacgcgggagaattgggaaagtaagctctcggaagaactggcacgttcgcgttcgtagcggc------------agcctaacagtgggaacagcctgagcatccctcagctggtgaacggatgaacaaaatg-ggcacgtccataaaggggaatattatacgcccatgaaaaaggaaggcagtgttgacacctgctac-aggggggtgaactttggaaacaccacgctaagcgaatgacgccagacacgaaatgccatgtgtgacatgtgaaacgcccacgatcggcagc--cgtagaCAGAAA i micMur1.scaffold_20872 C 0 I 65 s ponAbe2.chr21 3702808 1031 - 48394510 gtgtcctaatccactcttcttacaaggacaccagtcagattcaattaggggccatgccaatggcctaattttaccttaatcacctctttaaggtccctacctccaaataagg--acattctgtagtgccgggggctagggctgcaacatatggacttggat-gagcacaattcggcccaCCATGATTGTCTTTTGGGTTGATGTTTTAAT---------------TATCACCTTATAGAAAACACTGAGAAAAGCAGCAAATAGGCCACATTCAAG-GACAATGATGCAAAGAAACAAAGATG-AGGTAATAATTTGAACTTAATCATTATATTTATTTATATCCCAACATTCAATGAACTTCTGGCACCAGATGGACATTCCGTGACTATTTTTGAATGGTTTTATGAATTACATAAATTTCTCCTCTTTGGCTGTCTTCTCATGTGAATCCTAAATAGGTTTTCCAAGGTATACAATAATTCAGACACAGAACAAACACGTTTTGGTCTAATTTGAATAATAAGAACATCTAT-TTGCCCTTTCAGCATGAGAACTTGGGCTTACAGATCT-AGACCTTCCACTTTTCCAGGTTCCTCTTGCAAGCACTCCCCACAGGCCGGGTCTAGTTCCCAAGTTGCATGTGAAGTTAAGCCTAAATAAATACCAACGATACTGAAGGGTACTATTTTGTGATACTAGCAGTTTGGGAATACAACATCAAGGCAccagcaattccgctccaaggtgtatacacaagagaact--gaaaacatgttcacagaaaaactttcacatgaatgtttatggcagcattatttgtaagagccaaacagtgcagacaactcaaatatccataaattggtgattggataaacaaaacgagatacatgcataaaatggaatatcattcatctat-aaaaagggatgaaatgctgatacatgctaccatgtggatgaattctgaatacattatactgagtaaa-aaagctacacacaaaaagccacgtgttagatatgaaatgcccagaacaggcagcttcatagagagaaa i ponAbe2.chr21 C 0 C 0 s panTro2.chr21 3560970 1031 - 46489110 gtgtcctaatccactcttcttacaaggacaccagtcagattcaattaggggccatgccaatggcctaattttaccttaatcgcccctttaaggtccccacctccaaataagg--acattctgtggtgccgggggctagggctgcaacatatggacttggag-gagcacaattcggcccacaaTGATTGTCTTTCGGGTTGATGTTTTAAT---------------TATCACCTTGTAGAAAACACTGAGAAAAGCAGCAAATAGGCCACATTCGAG-GACAATGATGCAAAGAAACAAAGATG-AGGTAATAATTTGAACTTAATCATTATATTTATTTATATCCCAACATTCAACAAACTTCTGGCACCAGATGGACATTCTCTGATTATTTTTGAATGATCTTATGAATGACATAAATTTATCCTCTTTGGCTGTCTTCTCATGTGAATCCTAAATAGGTTTTCCAAGGTATACAATAATTCAGACACAGAACAAACACATTTTGGTCTAATTTGAATAATAAGAACATCTATGTTGCCCTTTCAACATGAGAACTTGGACTTACAGATCT-AGACCTTCCACTTTTCCAGGTTCCTCTTGCAAGCACTCCCCACTGGCCGGGTCTAGTTCCCAAGTTGCATGTGAAGTTAAGCCTAAATAAATACCAACAATACTGAAGGGTATTATTTTGTGATACTAGCAGTTTGGGAATAAAACATCAAGGCAccagcaattccgctccaaggtgtatacacaagagaact--gaaaacaggttcacagaaaaacttgcacatgaatgtttacggcagcattattcgtaagagccaaacagtggaaacaactcaaatatccatcaattggtgattggataaaaaaaacaagatacatgcataaaatggaatatcatt-gtctat-aaaaagggatgaaatgctgatacatgctactatgtgtatgaattctgaaaacattttactgagtaaa-aaagccacacacaaaaagccacatgttagatatgacatgcccagaacaggtagcttcatagagagaaa i panTro2.chr21 C 0 C 0 e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=44337.000000 s hg19.chr21_gl000210_random 6030 168 + 27682 aagcaaataaacagaaagattaggtggatgaatggatgaacagatggatggatggataaatgggtggatagatggatggatggataaatgggtggataaatggctggatgaatggatggatggatgaa---taagtagatacactgacggatggatgaatagatggatgga s panTro2.chr21 3562001 168 - 46489110 aagcaaataaacagaaagattaggtggatgaatggatgaacagatggatggatggataaatgggtggatagatggatggatggataaatgggtggataaatggctggatgaatggatggatggatgaa---taagtagatacactgacggatggatgaatagatggatgga i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3703839 171 - 48394510 aagcaaataaacagaaagattaggtggatgaacggatgaacagatggatggatggataaatgggtgggtagatggatggatggataaatgggtggataaatggctggatgaatggatggatggatgcactcttaatggatacactgatggatggatgaatagatgaatgga i ponAbe2.chr21 C 0 I 194 e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=63422.000000 s hg19.chr21_gl000210_random 6198 762 + 27682 tggataaatggatggatgaatggataaataaacaggtgaatgggtggatagacagatgaatgtatggatggatgaatagatgatggatggatggat-gatgaatgatggaagggtggatgatggatggatagatgaatagatgggtggatggatgaatgggtgataaatggatggatggatggatgaatgaacggatggattatactcagtataatgttttcagaattcatccacatggtagcatgtatcagcatttcatccctttttatagacaatgatattccattttatgcatgtatcttgttttgtttatccaatcaccaattgatggatatttgagttgtttccactgtttggctcttacgaataatgctgccataaacattcatgtgcaagtttttctgtgaacatgttttcagttctctgaaatggatgcatggatggatggatggatggatggatggatggatggataagtagataaatggatggatagatgaatagatgatggatggatggatgatgaatgatggaaggatgaatgactgatggatggatgaacagatggataggtggatggatgaatggatacatggatggatgaatggatg--------------------gatgaatagatgatggatggataatgaatgatagaaagatggataatggatggagagatgaatagatgaatggatggatggatggatgaatggatggatggatggatggatgaatggatggatggatgaatagatgatggatggatgatga s panTro2.chr21 3562169 749 - 46489110 tggataaatggatggatgaatggatgaataaacaggtgaatgggtggatagatggatgaatgtatggatggatgaatagatgatggatggatggatagatgaata---gatgggtggatg---gatggatagatgaatagatgggtggatggatgaatgggtgataaatggatggatggatggatgaatgaacggatggatTATactcagtataatgttttcagaattcatccacatggtagcatgtatcagcatttcatccctttttatagacaatgatattccattttatgcatgtatcttgttttgtttatccaatcaccaattgatggatatttgagttgtttccactgtttggctcttacgaataatgctgccataaacattcatgtgcaagtttttctgtgaacatgttttcagttctctgaaatggatgcatggatggatggatggatggatggatggat--------aagtagataaatggatggatagatgaatagatgatggatggatggatgatgaatgatggaaggatgaatgactgatggatggatgaacagatggataggtggatggatgaatggatacatggatggatgaatggatgaatggatggatgaatggatggatgaatagatgatggatggataatgaatgatagaaagatggataatggatggagagatgaatagatgaatggatggatggatg----aatggatggatggatggatggatgaat----------------agatgatggatggataatga i panTro2.chr21 C 0 C 0 e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21 3704010 194 - 48394510 I e rheMac2.chr3 3437056 30 + 196418989 I a score=7041.000000 s hg19.chr21_gl000210_random 6960 25 + 27682 atgatagaaagatggataatggatg s panTro2.chr21 3562918 25 - 46489110 atgatagaaagatggataatggatg i panTro2.chr21 C 0 C 0 s ponAbe2.chr21 3704204 25 - 48394510 atgatAGAAAGATGGATAATGGATG i ponAbe2.chr21 I 194 N 0 e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=208525.000000 s hg19.chr21_gl000210_random 6985 794 + 27682 gagagatgaatggatga---atggatgaatggatggatggatggatggatggatAAGTAAGATGGGACATGATAGGTGAGTCCCAATGATCATTAGGTGCAG-CCATGATGTAAACCTGTCAGGGGAACTGGAAGAACGTACGGCCTCTTTTCTAGATCTGCCATCCAAAGGCAGTCACAGTTCTGAGGCCTaagattctttgagcacttaccatgtgccaggcaccatgccaaacactgtggtcagctcaacacagggatgagagttgcagacacagactcggAGATGCTGCCACAACCACTGGCCGCAAGTGGTGGGGAGCTGTGCAGTTGGACTCTGGAGCCTTGACACCCCCAGACAGATAATCAGAACTGGC---------------TGACTCCATCAGCCAAGGCTGAGATCCACTGTCCTGCGAGCTCAGTGCAGCTCTGGTGGTAAGAAACTAGCCTCCTTCTGACAGCTCCTAAACCCAGATGAACAGCTCCCACTCTT-CTTGCACCTTGTGAATGCTGACCTGGTCTATCCTGCCCCCAGCCCACGTGGCCAACAGGACTGGCGCTTGGCTCTGAGGCTACATCCTCAACTGGGCCAGGCACGTCTGCCTGTCATGAGTTCTGGTGGTCTTCAGCCCTGCCGAGTGACGATGACTAACAACGTGTCGGTTCTGTGCTGGTGCAGTTCCAGATGTCCCTGCA-----TCGTCTGACCCCCACATCCTCCTGAGAATACACagtagagaacatctggccctggactc---agcctcagccactgcgtcacgcctgagccagactgctttttgg s panTro2.chr21 3562943 804 - 46489110 gagagatgaatggatga---atggatg--------gatggatggatggatggatAAGTAAGATGGGACATGATAGGTGAGTCCCAATGATCATTAGGTGCAG-CCATGATGTAAACCTGTCAGGGGAACTGGAAGAACGTACGGCCTCTTTTCTAGATCTGCCATCCAAAGGCAGTCACAGTTCTGAGGCCTaaggttctttgagcacttaccatgtgccaggcaccatgccaaacactgtggtcagctcaacacagggatgagagttgcagacacagactcGGAGATGCTGCCACAACCACTGGCCGCAAGTGGTGGAGAGCTGTGCAGTTGGACTCTGGAGCCTTGACACCCCCAGACAGATAATCAGAACTGGCACTGGGGCTTCTCTGTGACTCCATCAGCCAAGGCTGAGATCCACTGTCCTGCGAGCTCAGTGCAGCTCTGGTGGCAAGAAACCAGCCTCCTTCTGACAGCTCCTAAACCCAGATGAACAGCTCCCACTCTT-CTTGCACCTTGTGAATGCTGACCTGCTCTATCCTGCCCCCAGCCCACGTGGCCAACAGGACTGGCACTTGGCTCTGAGGCTACATCCTCAACTGGGCCAGGCACGTCTGCCTGTCATGAGTTCTGGTGGTCTTCAGCCCTGCCGAGTGACGATGACTAACAACGTGTCGGTTCTGTGCTGGTGCAGTTCCAGATGTCCCTGCA-----TCATCTGACCCCCACATCCTCCTGAGAATACACAGTAGAGAACATCTGGCCCTGGACTCCTCAGCctcagccactgcgtcacgcctgagccagactgctttttgg i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1788086 822 - 4212913 GAGAgatgaattgatgattgatgaatggattgatggatggatggatggatggatAAGTAAGATGGGACATGATAGGTGAGTCCCAATGATCATTAGGTGCAGCCCATGATGTAAACCTCTCAGGAGAACTGGAAGAACGTACAGCCTCTTTTCTAGACCTGCCGTCCAAAGGCAGTCACAGTTCTGAGGCctaaggttccttgagcacttaccatgtgccaggcaccatgctaaacactgtggtcagctcaacacagggatgagagttgcagacacagactcggAGACGCTGCCACAACCACTGGCCGCAAGTGGTGGAGGACTGTGCAGTTGGACTCTGGAGCCTTGACACCCCTGGACAGATAATCAGAACTGGCACTGGGGCTTCTCTGTGGCTCCATCAGCCAAGGCCGAGATTCACTGTCCTGCGAGCTCAGTGCAGCTCTGGTGGTAAGAAACCAGCCTCCTTCTGACAGCTCCTAAACCCAGATGAACAGCTCCCACTCTTCCTTGCACTTTGTGAATGCTTACCTGCTCCATCCTGCCCCCAGCCCACGTGGCCAACAGGACTAGTGCTTGGCTCTGAGGCTATATCCTCATCTGGGCCATGCATGTCTGCCTCTCATGAGTTCTGGTGGTCTTCAGCCCTGCTGAGTGACAATGACTAACAATGTGTCGGTTCTGTGCTGGTGCAGTTCCAGATGTCCCTGCATCCTGTCATCTGACCCCCACATCCTCCTAAGAATACACAGTGGAGAACATCTGGCCCTGGACTCCTCAGCCTCAGCCACTGCATCACccctgagccagactgctttttgg i ponAbe2.chr21_random N 0 C 0 e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=130145.000000 s hg19.chr21_gl000210_random 7779 433 + 27682 agcctcagtttccttttccgtggaatgggtgctgtcctgattgggcaaag---tcatctgagg-ctgactgatgcacgtg--ccctcgcacctccagggtctgcccacagcaggtgctcaaGGGGCTGGTTCCCACCGACCCACGGGGCCCAGGACCAGGAGGCTGTGGCCTGCCTCCTATAATGCGCCCCTGTCTCACTCGGCCACAAGGCAAGGCTTCACTAATCAGGGCGTTGTGGCCTGAGGCCTGGCCATTCTGTCCCTGTAGCCGGAGActggccccctcctggaccccctcctggaccctctcctCACCCTGCCTGCTGCCCCCA-----CCTCTCTACTCCGCTCGTTTGCTAAGTCCCTGGATACCTCCTGCAGGCGTCCTTGCCTGTGCCCGCCTCTGCCCACCTGGAAACCCACACATGACCCAT-------TCTCTGCT s pteVam1.scaffold_24879 45 344 - 9631 AGCCTC-GTTCCCTCCGCCATGGGGTGCACACCATCCCCGAGGGGCGAGGT--TCCCTTGAGGACTAACTGAGTGACATGGACATCCCTGCCTCCAAGGTCAGCCT-CGGCAGGGGCTC--GGGCCTGCTTCCCACC--CCCAGGGGCCCAGGGACC------CCGGGACCCGC--CCTACCATGTGCCC--ACCTCACTGGG--------------------------------------------------------------------GAGCCCAGCC-CCACCTGG---------CAAACACCCTCCTCACCCCGTCTTCTAGGCTCAGAGGCCCTGTCTCCTC----CATTTGCCGAATGCCTGGGTATTCCCTGCAGACA-----GCCTGTGCCCG--TCTGCCGGCTGGAGAACCCGCGGGCAGCCTGTGCAGGCCCCTCAGCT i pteVam1.scaffold_24879 N 0 C 0 s panTro2.chr21 3563747 433 - 46489110 agcctcagtttccttttccatggaatgggtgctgtcctgattgggcaaag---tcatctgagg-ctgactgatgcacatg--ccctcgcacctccagggtctgcccacagcaggtgctcaaGGGGCTGGTTCCCACCGACCCACGGGGCCCAGGACCAGGAGGCTGTGGCCTGCCTCCTATAATGCGCCCCTGCCTCACTCGGCCACAAGGCAAGGCTTCACTAATCAGGGCGTTGTGGCCTGAGGCCTGGCCATTCAGTCCCTGTAGCCGGAGActggccccctcctggaccccctcctggaccctctcctCACCCTGCCTGCTGCCCCCA-----CCTCTCTACTCCGCTCGTTTGCTAAGTCCCTGGATACCTCCTGCAGGCGTCCTTGCCTGTGCCCGCCTCTGCCCACCTGGAAACCCACACATGACCCAT-------TCTCTGCT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1788908 436 - 4212913 agcctcagtttccttctctgtggaatgggcactgtcccgattgggcaaagtcatcatctgagg-atgacagatgcatgtg--ccctcgcacctccagggtctgcccacagcaggtgctcaagagactggtTCCCACTGACCCAGGGGGCCCAGGACCAGGAGGCTGGGGCCTGCCTCCAATAATGCACCCCTGCCTCACTCAGCCACAAGGCAAAGCTTCACTAATCAGTGCGTTGTGGCCTGAGGCCTGGCCATCCTGTCCCTGTAGCCAGAGACTGGCCTcctcctggaccccctcctggaccccctcctCACCCTGTCTGCTGCCCCCA-----CCTCTCTACTCTGCTCATTTGCTAAGTCCCTAGATACCTCCTGTAGGCGTCCTTGCCTGTGCCCACCTCTGCCCACCTGGAAACCCACACATGACCCAT-------TCTCTGTT i ponAbe2.chr21_random C 0 C 0 e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 5138 787 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=77389.000000 s hg19.chr21_gl000210_random 8212 294 + 27682 CCTGCTG-------GGTCCACAGGCCTGAAGGGGGAG---CTGGGTCCAGACAGGTGGGG--------GTAAGCAGAGGGGAACGAGCAGTGCCTGCTGTGGCT-----GGGGCAAGGGCCAGGTTCAAGTAGGTCAGAGGTGCCGAGAGTCTGAGG-----CTGGGAACCCGGCTGCAGGCCAGTGGGGAAGGGCAGAGGCATGACGGGGTAGGCGGGGGAGCTGGCTGATAGGTAT--GGGGCCAGGAGAGCCCTCTGGAGGC----CTGTGGTTCCAGGGCTGGAGAACAGTCAGGTTTGGGGAGTGAGAGGGGGTC-----CCTCTGGG s ponAbe2.chr21_random 1789344 292 - 4212913 CCTGCTG-------AGTCCACAGGCCTGAAGGGGTAG---CTGGGTCCAGACAGGTGGGG--------GGAAGCAGAGAGGAAGGAGCAGTGCCTGCCGTGGCT-----GGAGCAAGGGCCAGGTTCAAGTA-GTCAGAGGTGCCGAGAGTCTGAGG-----CT-GGAACCCGGCTGCCAGCCAGTGGGGAAGGGCAGAGGCATGACGGGGTAGGCTGGGGAGCCAGCTGACAGGTAT--GGGGCCAGGAGAGCCCTCTGGAGGC----CTGTGGTCCCAGGGCTGAAGAACAGTCAGGTTTGGGGAGTGAGAGGGGGTC-----CCTCTGGG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3564180 294 - 46489110 CCTGCTG-------GGTCCACAGGCCTGAAGGAGAAG---CTGGGTCCAGACAGTTTGGG--------GGAAGCAGAGGGGAACGAGCAGTGCCTGCTGTGGCT-----GGGGCAAGGGCCAGTTTCAAGTAGGTCAGAGGTGCCGAGAGTCTGAGG-----CTGGGAACCCGGCTGCAGGCCAGTGGGGAAGGGCAGAGGCATGACGGGGTAGGCGGGGGAGCTGGCTGATAGGTAT--GGGGCCAGGAGAGCCCTCTGGAGGC----CTGTGGTCCCAGGGCTGGAGAACAGTCAGGTTTGGGGAGTGAGAGGGGGTC-----CCTCTGGG i panTro2.chr21 C 0 C 0 s pteVam1.scaffold_24879 389 185 - 9631 CCCGATGCCCTGCTGGGCCGCAGGCCTGACGGTGGA----CTGGGTTCAGCCGGGTGGGG--------GCA-------------GGGCAG-------------------GAGGGCGGGGCCA-----------------------------------------------------------------GGGAAGAG----GGTTTGGCCGAGTGGGT-GAGGAGCAGGCTGGCAGGGGTGAGGAGCCAGTGGAGC-----AGAGGT----CTGAAGCCTCAGGGGGAAAGAACAGACAGGTCTGGGGAG------------------------- i pteVam1.scaffold_24879 C 0 I 4786 s danRer6.Zv8_NA5719 5925 302 - 28660 CTTGCTG-------GGGTCAGAGGCCCCTAGGTGGAGGGCCAGGGGGCACCC---TGGGGCCTCTACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCC--------------CCTAGGTG--GAGGGCCAGGGGGCACCCTGGGGCCTATACTTCAAGTCAAGGGAGAGAGGTGGACCCCTGAGTAGCTTGCTGGGGTCTTAGGCCCCTAGGTGG--AGGGCCAGGGGGGCACCCTGGGGCCTATACTTCAATTCAAGGGAGAGAGGTGGACC---CCTGGGTAGCTTGCTGGGGTCTTAGGCCCCTAGG i danRer6.Zv8_NA5719 I 787 C 0 e micMur1.scaffold_20872 5629 65 + 14781 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=40327.000000 s hg19.chr21_gl000210_random 8506 181 + 27682 TGCAAAGTCA----------------------------CCCAGGGAGA-TTGCTGAACATGGTG----TTGCGGGGA---ACTGAGGCC-GGGG-----GCTGGGCTGTGATGGGGAGGTGATGGGGAG-------------GCTGAGAGCAGAGGGGGTGTGGTGGGGAGAGGAGGAGCTTATCAGCCCCCGCTGCAGGGAGCGG-CCGGAGCTGCAGAAGTCCCAGGATGCACCC s panTro2.chr21 3564474 181 - 46489110 TGCAAAGTCA----------------------------CCCAGGGAGA-TTGCTGAACATGGTG----TTGCGGGGA---ACTGAGGCC-GGGG-----GCTGGGCTGTGATGGGGAGGTGATGGGGAG-------------GCTGAGAGCAGAGGGGGCGTGGTGGGGAGAGGAGGAGCTTATCAGCCCCCGCTGCAGGGAGGGG-CCGGAGCTGCAGAAGTCCCAGGATGCACCC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1789636 181 - 4212913 TGCAAAGTCA----------------------------CCCAGGGAGA-TTGCTGAACGTGGTG----TTG-GGGGA---ACTGAGGCCAGGGG-----GCTGGGCTGTGATGGGGAGGCGAGGAGGAG-------------GCTGAAAGAAGAGGGGACGTGGTGGGGAGAGGAGGAGCTTATCAGCCCCTGCTGCAGGGAGGGG-CCGGAGCTGCAGAAGCCCCAGGATGAGCCC i ponAbe2.chr21_random C 0 C 0 s xenTro2.scaffold_1451 5615 170 - 93566 TGCACCAATA----------------------------GCAAGGCAGG-GAGCAGCCCATGGGG------GGGGGGACTTACCGATGTT-GGTGCTGAAGCCGGGGCACGACGTGAGGGGGATGGGGAG-------------GCTGAAGTTGGTGCCGGCCGAGTGCAGACAGGA------------CTCGTGGTGCTGGGCGTGG---GTAGTGACGGA---CACCGGCTGCGCCC i xenTro2.scaffold_1451 N 0 N 0 s danRer6.Zv8_NA5719 6227 204 - 28660 TGGAGGGCCAGGGGGCACCCTGGGGCCTCTACTGCAAGTCCAGGGAGAGTTGTGGACCCCTGGGTAGCTTGCTGGGG---TCAGAGGCC----------CCTAGGT-------GGACGGCCAGGGGGCACCCTGGGCTCTCTACTGCAAGTACAGGGAGAGTTGTGGACCCCTGGGTAGCTT----------GCTGGGGTCAGAGGCCCCTAGGTGGAGG---GCAAGGGGGCACCC i danRer6.Zv8_NA5719 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=12860.000000 s hg19.chr21_gl000210_random 8687 53 + 27682 CATGCCAAGTGGGG----------GAGTCCAGGAGTGGGGAGCTGGGTCCTCACCAACAGCAG s panTro2.chr21 3564655 53 - 46489110 CATGCCAAGTGGGG----------GAGTCCAGGAGTGGGGAGCTGGGTCCTCACCAACAGCAG i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1789817 53 - 4212913 CATGCCAAGTAGGG----------GAGTCCAGGAGTGGGGAGCTGGGACCTCACCAACAGCAG i ponAbe2.chr21_random C 0 C 0 s danRer6.Zv8_NA5719 6431 48 - 28660 ---------TGGGGCTTGTGCTGCAAGTCCAG--GCAGAGAAGTGGACCCCTG--GGTAGC-- i danRer6.Zv8_NA5719 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=23121.000000 s hg19.chr21_gl000210_random 8740 55 + 27682 AGGCTGGCAGCCAAGGCTGCTGCAAGGCAGCCCTAGGGCCCTGGGGGACACTGGG s turTru1.scaffold_115263 85 55 - 23303 AGTCTGGTGGCCAAGGCTGGCGCCTGGTGTCCTTCGGTCCCTGGGGGGGAGCAGG i turTru1.scaffold_115263 N 0 C 0 s panTro2.chr21 3564708 55 - 46489110 AAGCTGGCAGCCAAGGCTGCTGCAAGGCAGCCCTCGGGCCCTGGGGGACACTGGG i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1789870 55 - 4212913 AGGCTGGCAGCTGAGGCTGGTGCAAGGCAGCCCTCGGGCCCTGGGGGACATTGGG i ponAbe2.chr21_random C 0 C 0 s danRer6.Zv8_NA5719 6479 48 - 28660 ATGCTGGGGTCCTAGTCTCCTAGGTGG-------AGGGCCAGGGGGCACCTTGGG i danRer6.Zv8_NA5719 C 0 I 1552 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=141641.000000 s hg19.chr21_gl000210_random 8795 441 + 27682 TGGCTACAAAGTCCT---------TCTGGGCT---------GGCAGAGGCCCCTC----CTGATGC-------------------------------------CCCACTCTCACTTTGCCAGACGCTGAGGCAAGTGCCTCAGTTTCCACCTGGAA-------GCTCCC--------CTAGCCCAGGGAACCCCAGAATCATCACGCTCTTTTTCATCTCTACACCCTCCAGGATGAACATCGGGAGGAG-GGGGCCTATTCCAGCCCCAGGGGCTTGATTTCCACTGAAGTGCAGGCTTCAGGTTCTCAAACCCCTTCTCCC-AGCACC-ACAGCCCCGGCACCATCCCTGAGTCAAAGCACAAGCCCAGGCGAGGCAGCCCATCCCCCGGGGGTCCC-CACTCACCC-TGCCG-CCACAGCGCACGCCTATAGATGCAGATGGGGTGAGCGGCCACCTCCTGTCCTGGGTGTGCAGTGATGTTTACTCTCCCAGA---CCTGCACTGTGGAGATGTCCCCC-G s turTru1.scaffold_115263 140 503 - 23303 TGGCTGGAGGGTCATCGCTGGCGCCCTGGGCTCGAGTGGCCGGGGGAAGCCTCTCGGGGCTGACTCACGGTCTCTGGGCAGGAGCGGGGCCCCTCGGGTCCGGCCCGCTGTCAC--CGGCAGGTGTCGGGGTGAGCGCCTCGGCTTCCATCTGGAAGTGGGGGGCTCTTGAGGGGGGCAGTCCCAGGGACCCCCAGAATTGGTGCTTTGTTCTACATTTCCATGCCTTTTGGGGTGAGCGTCGAGGGAAGAGGGGATCTCTCTGGCCACAGCAGCTTGATCTCCAGCG-GGTCTAGACCCCAGGTTCTGCAAACCCTCCCTCC-AGGACCGGCAGCCC-----------------CAGACCACGAGCCCCCCAGAGGCGGCCCCTTGCCTGGGCTCCCCACACACACCCGTGCCCTTCCCTACATCCACCTGTAAATGCAGGCGAGGGGCG-GTCTGCCTCCTGTGCTGGACGTGCGGTGCCCTGGGACGGTCTGGGTCCCCTGCTCCATAGACATGTCCCTGCA i turTru1.scaffold_115263 C 0 C 0 s panTro2.chr21 3564763 443 - 46489110 TGGCTACAGAGTCCT---------TCTGGGCT---------GGCAGAGGCCCCTC----CTGATGC-------------------------------------CCCACTCTCACTTTGCCAGACGCTGAGGCAAGTGCCTCAGTTTCCACCTGGAA-------GCTCCC--------CTAGCCCAGGGAACCCCAGAATCATCACGCCCTTTTTCATCTCTACACCCTCCAGGATGAACATCGGGAGGAG-GGGGCCTATTCCAGCCCCAGGGGCTTGATTTCCACTGAAGTGCAGGCTTCAGGTTCTCAAACCCCTTCTCCC-AGCACC-ACAGCCCCGGCACCATCCCTGACTCAAAGCACAAGCCCAGGAGAGGCAGCCCATCCCCCGGGGGTCCC-CACTCACCC-TGCCGCCCACAGCGCACGCCTATAGATGCAGATGGGGTGAGCGGCCACCTCCTGTCCTGGGTGTGCAGTGATGTTTACTCTCCCAGA---CCTGCACTGGGGAGATGTCCCCCTG i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1789925 440 - 4212913 TGGCTACAGGGTCCT---------TCTGGGCT---------GGCAGAGGCCCCTC----CTGATGC-------------------------------------CCCACTCTCACTTTGCCAGATGCTGAGGCAAGTGCCTCAGTTTCCATCTGGAA-------GCTCCC--------CTAGCCCAGGGAACCCCAGAATCATCACGCCCTTTTTCATCTCTACACCCTCCAGGATGAACTTCGGGAGGAG-GGGGCCCTTTCCAGCCCCAGGGGCTTGATTTCCACTGAAGTGCAGGCTTCAGGTTCTCAAACCCCTTCTCCCAAGCACC-ACAGCCCGGGTGCCATCCCTGGCTCAAAGCACAAGCCCAGGTGAGGCAGCCCATCCCCTGGGGATCCC-CACTCACCC-TGCCGCCCCCAGTGCACGCCTATAGATGCAGGTGAGGT----GGCCACCTCCTGTCCTGGGTGTGCAGTGACATTTACTCTCCCAGA---CCTGCACTGTGGAGATGTCCCCCCA i ponAbe2.chr21_random C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=14413.000000 s hg19.chr21_gl000210_random 9236 39 + 27682 GGACAGACCTCGG-ATGACCCACTGCGGCATCATCATCGT s panTro2.chr21 3565206 39 - 46489110 GGACAGACCTCGG-ATGACCCACTGCGGCATCATCATCGT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1790365 39 - 4212913 GGGCAGACCTTGG-ATGACCCACTGCGGCGTCATCATCGT i ponAbe2.chr21_random C 0 C 0 s calJac1.Contig12142 41114 39 - 49942 AGACAGACCTCAC-ATGATGCTCTGTGGCCTCATCATGAG i calJac1.Contig12142 N 0 N 0 s turTru1.scaffold_115263 643 33 - 23303 GGGCAGACATCAGCGGGAGAGGCTGAGGCAGGA------- i turTru1.scaffold_115263 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=23857.000000 s hg19.chr21_gl000210_random 9275 75 + 27682 GTTTCCCCAAAACCAGGGCTGGTTTCCAT-TTTGCTACCCACGGCTTGGAGGCCTTGAGGAGCTCTTTTCTCCTGT s panTro2.chr21 3565245 75 - 46489110 GATTCCCCAAAACCAGGGCTGGTTTCCAT-TTTGCTACCCACGGCTTGGAGGCCTTGAGGAGCTCTTTTCTCCTGT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1790404 75 - 4212913 GTTTCCCCAAAACCAGGGCTGGTTTCCAT-TTTGCTACCCACGGCTTGGAGGCCTTGAGGAACTCTTTTCTCCTTT i ponAbe2.chr21_random C 0 C 0 s turTru1.scaffold_115263 676 63 - 23303 -----ACCGGGCCCAGGTCTGGCCTCCACGGCTGCTGCTCA--------GGGACTTTCAGAACTGTTTTCTTTTAT i turTru1.scaffold_115263 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=72762.000000 s hg19.chr21_gl000210_random 9350 266 + 27682 GGTTTTTCAatggaggaatcgcttgtgcacaataagctgcactcatttaaaccatccagatcggtgagtttgacagatgtctacaccatgagaccactgccacaggcaggattcggggcctttcccccaccctcaaaatctcctcctaccTGCCACAGGCAACCGCTGACCTGCTTTCTGTTGGTGGGGTTATGCAGTGGTGTGACCTTTTTGCAAGCAATGAAGCAACCCCTGCCACAGCCTTCTATGACCAcctcccctcccct s panTro2.chr21 3565320 266 - 46489110 GGtttttcaatggaggaatcgcttgtgcacaataagctgcactcatttaaaccatccagatcggtgagtttgacagatgtctacaccatgagaccactgccacaggcaggattcggggcctttcccccaccctcaaaatctcctcctaccTGCCACAGGCAACCGCTGACCTGCTTTCTGTTGGTGGGGTTATGCAGTGGTGTGACCTTTTTGCAAGCAATGAAGCAACCCCTGCCAGAGCCTTCTATGACCAcctcccctcccct i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1790479 266 - 4212913 GGTTTTTCAATGGAGGAATCGCTTGTGCacaataagctgcactcatttaaactgtccagattggtgagtttgacagatgtctacaccacaagaccactgccacaggcaggattcggggcctttcccccaccctcaaagtctcctcctaccTGCCACGGGCAACCGCTGACCTGCTTTCTGTTGGTGGGGTTATGCAGTCGTGTGACCTTTTTGGAAGCAATGAAGCAACCCCTGCCAGAGCCTTCTATAACCACCTTCCCTCCCCT i ponAbe2.chr21_random C 0 T 280 e turTru1.scaffold_115263 739 0 - 23303 C e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=8919.000000 s hg19.chr21_gl000210_random 9616 95 + 27682 cccctccccctacctccacctcccctctgcccccacctcccctcccctccccctacctccacctcccctctacctccacctcccctccgctcccc s panTro2.chr21 3565586 95 - 46489110 cccctccccctacctccacctcccctctgcctccacctcccctcccctccccctacctccacctcccctctacctccacctcccctcccctcccc i panTro2.chr21 C 0 T 378 e turTru1.scaffold_115263 739 0 - 23303 C e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 280 - 4212913 T e rheMac2.chr3 3437056 30 + 196418989 I a score=0.000000 s hg19.chr21_gl000210_random 9711 322 + 27682 tccacctcccctcccgtcccctctacctccacctcccctctacctccacctcccctctacctccacctcccctcccctccaccttccctcccctccacctcccctcccctccacctccacctcccctctacctccacctcccctcccctccccctacctctacctcccctctacctccacctccacctccacctcccctcccctccacctccacctcccctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN e turTru1.scaffold_115263 739 0 - 23303 C e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e panTro2.chr21 3565681 378 - 46489110 T e ponAbe2.chr21_random 1790745 280 - 4212913 T e rheMac2.chr3 3437056 30 + 196418989 I a score=95603.000000 s hg19.chr21_gl000210_random 10033 283 + 27682 GAGCTCTTTTCTCCTGTGGTTTTTCAatggaggaatcgcttgtgcacaataagctgcactcatttaaaccatccagatcggtgagtttgacagatgtctaca-ccatgagaccactgccacaggcaggatt------cggggcctttcccccaccctcaaaatct-----cctccta---ccTGCCACAGGCAACCGCTGACCTGCTTTCTGTTGGTGGGGTTATGCAGTGGTGTGACCTTTTTGCAAGCAATGAAGCAACCCCTGCCACAGCCTTCTATGACCAcctcccctcccct s ponAbe2.chr21_random 1790465 280 - 4212913 ---CTCTTTTCTCCTTTGGTTTTTCAATGGAGGAATCGCTTGTGCacaataagctgcactcatttaaactgtccagattggtgagtttgacagatgtctaca-ccacaagaccactgccacaggcaggatt------cggggcctttcccccaccctcaaagtct-----cctccta---ccTGCCACGGGCAACCGCTGACCTGCTTTCTGTTGGTGGGGTTATGCAGTCGTGTGACCTTTTTGGAAGCAATGAAGCAACCCCTGCCAGAGCCTTCTATAACCACCTTCCCTCCCCT i ponAbe2.chr21_random T 280 I 1379 s panTro2.chr21 3565303 267 - 46489110 GAGCTCTTTTCTCCTGTGGtttttcaatggaggaatcgcttgtgcacaataagctgcactcatttaaaccatccagatcggtgagtttgacagatgtctaca-ccatgagaccactgccacaggcaggatt------cggggcctttcccccaccctcaaaatct-----cctccta---ccTGCCACAGGCAACCGCTGACCTGCTTTCTGTTGGTGGGGTTATGCAGTGGTGTGACCTTTTTGCAAGCAATGAAGCAACCCCTGCCAGAGCCTTCTATGA---------------- i panTro2.chr21 T 378 I 1066 s turTru1.scaffold_115263 739 280 - 23303 ----TTTTTAATTTTGTTGTTGtt--gttgaagtgtaatttgtgtgcaataaaccgcgccc--ttcagctgtattgatcagcgtgtctgacgaacgtctacgcccataaaatccccaccacagtcaagattcacccccaaagcttccttgtgacctttgtaagctacgtccctcccaactcctgccccaggcgaccactgacctgcttttcgtTGTTGGGGGTAGGCACTGGTGTAAACGTTTTGGAGGCAGTGAGGCAATCACTATCAGAAACTTCTAGGACCACCT---------- i turTru1.scaffold_115263 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3437056 30 + 196418989 I a score=4625.000000 s hg19.chr21_gl000210_random 10316 68 + 27682 cccctctacctcccttccacctcccctcccctccacctgccctcgacacttcctcccctcccctccag s panTro2.chr21 3566636 68 - 46489110 cccctctacctcccttccacctcccctcccctccacctgccctcgacacttcctcccctcccctccag i panTro2.chr21 I 1066 C 0 s turTru1.scaffold_115263 1019 11 - 23303 ---------------------------------------------------------Gtcctctccag i turTru1.scaffold_115263 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I e rheMac2.chr3 3437056 30 + 196418989 I a score=49677.000000 s hg19.chr21_gl000210_random 10384 194 + 27682 cctcactggcctgccccttctggagcgcccaagcctgctgctg-ccccggggccttggcacgtgccgttcctgctgcctggacagctctttctccaggc-actgcctccttactttcctggggtctgtgc---aatggcgtgccatcagggaggc----ccccctacccctcctgtgttagatggtgcccgccccttccctga s tarSyr1.scaffold_278351 5 178 + 1901 ccccgccagtctgcctttcctgaagccatcaagcatgccgctgtcctcagggccttgatacgtgctgttcccactgcctggatggctcttcctc----------------------cctcaggtttgtcc--aaatgtcacactgttagggaggcccttccctcagcttgtcccatgtacgatggca-cagtgcctcccttgg i tarSyr1.scaffold_278351 N 0 C 0 s panTro2.chr21 3566704 194 - 46489110 cctcactggcctgccccttctggagcgcccaagcctgctgctg-ccccggggccttggcacatgccgttcctgctgcctggacagctctttctccaggt-actgcctccttactttcctggggtctgtgc---aatggcgtgccatcagggaggc----ccccctacccctcctgtgttagatggcgcccgccccttccctga i panTro2.chr21 C 0 C 0 s turTru1.scaffold_115263 1030 191 - 23303 cctcgctggcctgccccct---gagcccccaagcacgccactg-ccccagggcctttgcacgtgctgttccctcaacctggaaggctcttcccccaggtggctgcctcctcccttcccccgggtgtgtgtccatctgttacgtggtcaggaaggc----ccccccgc-cgtcctgtcttaagcgg---tcaccccagccTTGA i turTru1.scaffold_115263 C 0 I 6134 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I e rheMac2.chr3 3437056 30 + 196418989 I a score=22218.000000 s hg19.chr21_gl000210_random 10578 164 + 27682 gctctgcctcccct-ccGGCCCTCGGGCGGTCCAGTGCAGCACACACTG--------------CAGCCGCTGTCAGGAAGTACTGGGAGGGCAGAGCCTGGGTCTCTGGGGTTTtgctgtggtctcagtgtat-----cccgctaaattcagatattgaagtctctcccccagt-gtgctggcgt s tarSyr1.scaffold_278351 183 181 + 1901 gctttgcttcctctcccagccctc----actgccatccagcatgccctgtttcacctgcctactggcctttgtcattaagctccatgaaagcagggccctggtctCCTGGGTTTtgctgtggtcagaatgtttgtgcccacccaagattcggatgctgacacctaaccctctttggggatagtct i tarSyr1.scaffold_278351 C 0 C 0 s panTro2.chr21 3566898 164 - 46489110 gctctgcctcccct-ccggccctcgggtggtccagtgcagcacacactg--------------cagccgctgtcaggaagcactgggagggcagggcctgggtctCTGGGGTTTtgctatggtctcagtgtat-----cccgctaaattcagatattgaagtctctcccccagt-gtgctggtgt i panTro2.chr21 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 5629 65 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I e rheMac2.chr3 3437056 30 + 196418989 I a score=94787.000000 s hg19.chr21_gl000210_random 10742 413 + 27682 gaggaggtggggctctggggaggtggagcccttgcgaatgggattagcgcccttatgaaagggaccccagagagttcctttgctccttctgccgcacgtggatacagccagaaggtgccatcgatgaaccagaaagcaga-------cagacactgaatctggg--ggcgccttgaccgcgggtgt-ccagctccacaacagtgaaccagaacagtgagaaacaggtttctgttgcttatgagcc-cccagcctatgagcacgtgtgatggccgccagaacggacCCAGCGGGTTCACTGCACGGACACAGAGCGTCTTCGCTGCCTGCCTCTGCCACACCAGCTGCGAGGGCCCGCAGATGGCCAGTTCCCCTCTCTCCCTGTGTGCCTGCCAT-GCGGGTTAAACAAAACTCCCACAGACAGA s panTro2.chr21 3567062 413 - 46489110 gaggaggtggggctctggggaggtggagcccttgcgaatgggattagcgcccttatgaaagggaccccagagagttccttggctccttctgccgcacgtggatacagccagaaggtgccatcgatgaaccagaaagcaga-------cagacactgaatctggg--ggcgccttgactgcaggtgt-ccagctccacaacagtgaaccagaacagtgagaaacaggtttctgttgcttatgagcc-cccagcctatgagcacgtgtgatggccgccagaacggacCCAGCGGGTTCACTGCACGGACACAGAGCGTCTTCGCTGCCTGCCTCTGCCACACCAGCTGCGAGGGCCCGCAGATGGCCAGTTCCCCTCTCTCCCCGTGTGCCTGCCAT-GCGGGTTAAACAAAACTCCCACAGACAGA i panTro2.chr21 C 0 C 0 s tarSyr1.scaffold_278351 364 382 + 1901 caggaggtggagcctttgggaagtggagcctgcaggaagaggattagtgcccttatgaaagggaccccagagagtgcctttgccccttctgccattcgagggcacagcaggaaggcactgtc--tgaatcaggaagcaggccctcaccagacaccaagtctgct--ggcaccttgaccttgagcatcccagct-------------ccagaaccgtgagaaatagatctctgttgtttataagctgcccagtccatggtca---atg-tagcagccagaatggataagataGGTTTGCCTTCCTGAAACAGAGCG-----------TGCCTTGGGTAT--------TGAGTGCTCTTGGGTGGCCAAGACCCATCTCTCCCACCGTGTCTGCCACAGCAAGCTTAAAAAA---CCCACAGAGGGA i tarSyr1.scaffold_278351 C 0 C 0 s micMur1.scaffold_20872 5694 394 + 14781 gaggtgatggggcctggggg----ggcaccctcacctgtggggtgggtgtccctgggagagggaccccagagagcgcctttgcaccttccaccacctgaggacacggc-ggaaggtaccggctacgaaccaggaagcagc-tctcaccggacatggaatctgctccagcgccttgaccttggacttcccagct-------------ccagacca--cggaaacaaatctccctcgttcgttcgcc-gccagcgaacggccatttgttgt-gcagccagga--gactgagacGGCCAGCTGCCCCCGAACACGGCATCTCAGCTCCCTGCGTCTGTCAC--GTGGTGTCAATGCTC-TGGGTGGCCAGTTCCCGTCTAACCCC-CGTGCCTGCCTT-GCGGGTT-AACACGGAGCCCACggccggg i micMur1.scaffold_20872 I 65 I 380 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I e rheMac2.chr3 3437056 30 + 196418989 I a score=15427.000000 s hg19.chr21_gl000210_random 11155 100 + 27682 GCCAAACGGAGAGA--GAGCACCAAGGT-GGAGGGGACGGTAGGGGGACTGTTCCTTTTCAGTCACGTGGCTGAAATGGTGTCTCAGCCAGGCCTGGAGCCCG s tarSyr1.scaffold_278351 746 98 + 1901 GCCACACAGAGAGC---TGCAGTGGGGTAGGAGGGGAGCAGAGGGGGATTTCTGCCTGTCAGTCACATGGCCG--ACGGCGGCACAGCCAGGCCTGCATCCCA i tarSyr1.scaffold_278351 C 0 C 0 s panTro2.chr21 3567475 102 - 46489110 GCCAAACAGAGAGACAGAGCACCGAGGT-GGAGGGGACAGGAGGGGGACCATTCCTTTTCAGTCACGTGGCTGAAATGGTGTCTCAGCCAGGCCTGGAGCCCA i panTro2.chr21 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 6088 380 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I e rheMac2.chr3 3437056 30 + 196418989 I a score=14734.000000 s hg19.chr21_gl000210_random 11255 72 + 27682 GACCTCCTGAGCCCACACCAAAGTTGCCTCCCGCCTCCTGAGCCCACGCCAAAGTTGCCTCCCACAAACACG s panTro2.chr21 3567577 41 - 46489110 GACCTCCTGAGCCCACACCAAAGTTGCCTCCC-------------------------------ACAAACACG i panTro2.chr21 C 0 C 0 s rheMac2.chr3 3437086 72 + 196418989 GACctcctgagcccacaccaaagttgcctcccatctcctgagcccacgccaaatttgcctcccaCAAACACG i rheMac2.chr3 I 30 C 0 s tarSyr1.scaffold_278351 844 43 + 1901 GGGCTTCTGAGCCCACATTGCAGTCACCCTCCTTC-----------------------------CAAACACA i tarSyr1.scaffold_278351 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_20872 6088 380 + 14781 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I a score=31412.000000 s hg19.chr21_gl000210_random 11327 102 + 27682 CTGCTTTCCTGG---GTGGGGGA-----------------------------------GCTCGCCATTCCCCGACACGAG------Cagggccaggctctggggcc------ggctgctaaggctcaaatcccaacttggtgtgacgtgggt s panTro2.chr21 3567618 90 - 46489110 CTGCTTTCCTGG---GTGGGGGA-----------------------------------GCTCGCCATTCCCCAACACGAG------CAGGGccaggctctggggcc------ggctgctcaagct------------tggtgtgacgtgggt i panTro2.chr21 C 0 C 0 s rheMac2.chr3 3437158 102 + 196418989 CAGCTTTCCCGG---GTCAGGGA-----------------------------------GCTCGCCACTCCCCCACGCGGG------Cagggccaggttctggggcc------ggctgctcaggctgaaatcccgacttggtgtgacgtgggt i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_278351 887 93 + 1901 CA-------TGG---GTGAGGGG----------------------------------TGTTCCCTGATACCCCACAAGGG------TAGGGTcagactctggagcc-----aggctgcccagattcaaatcccaa----gtgtgacttggct i tarSyr1.scaffold_278351 C 0 C 0 s micMur1.scaffold_20872 6468 148 + 14781 CTGCTCTCCTGTCACGTGGGGGGGTGTCACAGCCAGGCCTGGGCTGAGTCCACGCGTGGCTGCCCGGCCCCAGACCCACGGCCTTCCAGGGCGAGG----GGCGCCCCATGCGGCAGGGCAGGCTGAAGTCCCGACTTGgtgtgacatgggc i micMur1.scaffold_20872 I 380 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1790745 1379 - 4212913 I a score=242666.000000 s hg19.chr21_gl000210_random 11429 428 + 27682 gacatgctcaatctgctgtgcctcggcttccccttctgtaacatggggatcatcacagttccttcctcctggggtctgtggggactcagtgcctcggcttccccttctgtaacatggggatcatcgcagttccttcctcctggggt-ct-------gtggggactcagtggtagccgtgggagaggttagggagcctgccttgactcatggccagcgtttgatgaGCTAAAATGGGCGGGGCCATGAGAC-----GGGCAGGTGGCAGGGAGCTT-CAGTC-----ACCTGAGAGCACCAAAGGGGAGGCCGGAGCCTGGCACACCCGTCCTGCTGGCCCCGTCTTTGTGCCTGGCCTGAAGTGGGTCACTTCCCACCCCACCCCCTCTCCGTATCAGGCTGTTCACCCCC-ACCTTCCTGCCCTGTACCCCCAGAGGAGTGTGCGGA s panTro2.chr21 3567708 428 - 46489110 gacatgttcaatctgctgtgcctcggcttccccttctgtaacatggggatcatcacagttccttcctcctggggtctgtggggactcagtgcctcggcttccccttctgtaacatggggatcatcgcagttccttcctcctggggt-ct-------gtggggactcagtggtagccgtgggagaggttagggagcctgccttgactcatggccagcgtttgatgaGCTAAAATGGGAGGGGCCATGAGAC-----GGGCAGGTGGCAGGGAGCTT-CAGTC-----ACCTGAGAGCACCAAAGGGGAGGCCGGAGCCTGGCACACCCATCCTGCTGGCCCTGTCTTTGTGCCTGGCCTGAAGTGGGTCACTTCCCACCCCACCCCCTCTCCGTGTCAGGTTGTTCACCCCC-ACCTTCCTGCCCTGTACCCCCAGAGGAGTGTGCGGA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1792124 422 - 4212913 GACATGCTCAATTTGATGTGCCTCAGCTTCCCATCTGG--ACATGGGGATCATCGCAGTTCTTCCTTCT--GGGTCTGTGGGGACTCAGTCCCTGGGC-tccccttctgtaacatggggatcatcgtagttccttcctcctggggt-ct-------gtggggactcagtgGTAGCCGTGGGAGAGGTTAGGGAGCCTGCCTTGACTCATGGCCAGCGTTTGATGAGCTAAAATGGGAGGGGCCATGAGAC-----AGG-AGGTGGCAGGGAGCTT-CAGTC-----ACCTGAGAGCACCAAAGGGGAGGCCGGAGCCTGGCACACCCGTCCTGCTGGCCCCGTCTTTGTGCCTGGCCTGAAGTGGGCCACTTCCCACCCCACCCCCTCTCCGTGTCAGGCTGTTCACCCCC-ACCTTCCTGCCCTGCACCCCGAGAGGAGTGTGCGGA i ponAbe2.chr21_random I 1379 C 0 s rheMac2.chr3 3437260 424 + 196418989 gacatgctcaatctcctgtgccttggcttccccttctgtaacatggggatcttcacagttccttcctcccagggtctgtggggactcagtgcctcggcttccccttctgtaacctggggatcttcacagttccttcctcctggggt-ct-------gtggggactcagtgaTAGCTGTGGGAGAGGTTAGGGAGCC-ACCTTGATGCATGGCCAGTGTTTGATGAGCTAAAATGGGAGGGGCCATGAGAC-----AGGGAGATGGCAGGGAGCT----GCC-----ACCTGAGAGCACCAAAGGGGAGACTGGAGCCTGGCACCCCCGTCCTGCTGGCCCCATCTTTGGGCCTGGCCTGGAGTGGGTCACTGCCCACCCCACCCCCTCTCCGTGTCAGGCTGTTCACCCCC-ACGTTCCTACCCTGCGCCCCCAGAGGAGTGTGCGGA i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_278351 980 299 + 1901 gacatgcta---------------------------taaaaaataaaaataaaccaaactcatt------------------------gtgcctcagtttcccccctggtaaaacgaggatagtagtagcccctacctcatggggt-ctcatgtgaggGAGGACTCCGTGGTCACAGTGGGAGAGGTTAGGAAGTGTGCCTTGACAGACGGTCAGCATTTGATGAACTAAG--GGGGTGGAGCATGAGGCTCTGGGGAGAGGAGGCAGGGA-----------------------------------------------------------------------------------GCCTGGGGTCAATCTCT-CCCACCCT-CCCCCTCT-TGTGTTAAGCTATTTTCCCCTGACCTTCCCATGGCAT------AAAGGACTGTGT--- i tarSyr1.scaffold_278351 C 0 C 0 s micMur1.scaffold_20872 6616 300 + 14781 aacgtgcatggctctttgtgcctcagtttcccctttcatacaatg-----------------------------------------------------------------------gggataataatagtccctgcctcgtggggtggt-------gtgaggattCCGTGGAAGCAGCTGGAAAGGCCAGAAG----GCTTCAGTGTGCGGCCAGC----------------------------TGAGTC-----GGACAGG-GGCAGGGAGCTCGCAGCCCCCCACCCCGAGAGCGCCAAAGGGGAGGCGGCCCCC-----CACCCTGCCCGCCGGCCTCACATTTGGGCCTGGGCT------------------------CCCCGCTCCGTGTCAGGCTGTGCGCCCC--ACCTTCCTGC-CTGCACCCGCAAAGCAGCGCGCAGA i micMur1.scaffold_20872 C 0 N 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=187333.000000 s hg19.chr21_gl000210_random 11857 305 + 27682 TGGATGGGTACGTGGGC-AGATATCCAGATGGAT--------AGACAGACAGCATCAAACACCGCACTTA-AGCAAAGAACAAGTCTTAATGTAGCGGGGGCTGGAGGGGAGCG----AGCGCACTGTGAGAACCAATGTTCATcgcccagcaccgcccagcaccgcccag-caGCCTCCTCACCAATTCACTCAATTAACCTCTGTCCTCCGCGAGCAGAACACATTCTGCTCAGTGTCGCCCAGGATTCCATTTGACAGAAGCCAAACCACTTCATGAGGAGCTTAAATAAAGAGCTCTCCTCCTACCCTTGGAACAC s panTro2.chr21 3568136 305 - 46489110 TGGATGGGTACGTGGGC-AGATATCCAGATGGAT--------AGACAGACAGCATCAAACACCGCACTTA-AGCAAAGAACAAGTCTTAATGTAGCGGGGGCTGGAGGGGAGCG----AGCGCACTGTGAGAACCAATGTTCATcgcccagcaccgcccagcaccgcccag-caGCCTCCTCACCAATTCACTCAATTAACCTCTGTCCTCCGCGAGCAGAACACATTCTGCTCAGTGTCGCCCAGGATTCCATTTGACAGAAGCCAAACCACTTCATGAGGAGCTTAAATAAAGATCTCTCCTCCTACCCTTGGAACAC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1792546 295 - 4212913 TGGATGGGTACGTGGGC-AGATATCCAGATGGAC--------AGACAGACAGCATCAAACACCGCACTTA-AGCAAAGAACAAGTCTTAATGTAGCCGGGGCTGGAGGGGAGCG----AGCGCACTGTGAGAACCAATGTTCAT----------CACCCAGCACCGCCCAG-CAGCCTCCTCACCAATTCACTCAATTAACCTCTGTCCTCTGCGAGCAGAACACATTCTGCTCAGTGTCGCCCAGGATTCCATTTGACAGAAGCCAAACCACTTCATGCGGAGCTTAAATAAAGATGTCTCCTCCTACCCTTGGAACAC i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3437684 288 + 196418989 TGGATGGGTGTGTGGGC-AGATATCCAGATG------------GACAGACAGCACCAAACACCACGCTTA-AGCGAAGAGCAAGTCTCAATGCAGTGGGGGCTGCAGGGGAGCG----AGCGCACGGTGAGAACCGATGTTCGT----------GGCCCAGCACCGCCCAG-CAGCCCGCTCACCAATTCACTCAATTAACCTCTGTCCTCTGCAAGCAGAACA---TCTGCTCAGTGTCGCCCAGGATTCCATTTGACAGAAGCCAAACCACTTCGTGCGGAGCTTAAGTAAAGATCTCTCCTCCTACCCTTGGAACAC i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_278351 1279 301 + 1901 --GATGGGTAGGTGATCTTGATATCTAGATGGATAGACAGAGAGACAGACAGCACCAGATGCCACGTTTACAGCAGATGGTGGCTATCAGTATATCC-AGGCTTTAAGGGAACAACTTAAGGGATTGTGAGACCCGACTCCTGT----------CCCCAGGCAAGGGCCATCCATCCCGCTCCCTCCTCCACCCAATTAACCTGCTTCCTCTACGGACAGAACATGTTCTGCTCAGTGTCCCCGAAGATTCCACTTGACAGAAGCCAACCTATTTCATAAGGAGCTCAAATAGAGATCT------CAACCCTGTAAACAC i tarSyr1.scaffold_278351 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=95658.000000 s hg19.chr21_gl000210_random 12162 112 + 27682 ACTTGAGCGTAAGCCTATTTTTGCATATGTTACATAACACTCTCTCCTCATTCATGGACAGGGAACGCTTCCCTATGAATGGTGTTCACACTGAGGCAGAAGACTCTCCCTC s tarSyr1.scaffold_278351 1580 112 + 1901 ACTTGAACGTAAGTCTATTTTTACATCAGTTACGCAACACTTTCCTCTCATTCACTGATAGGGAGCCTTTCCCTGTGAATGATGTTGGCACTGGGGCAGGATCAACTCCCAT i tarSyr1.scaffold_278351 C 0 C 0 s rheMac2.chr3 3437972 109 + 196418989 ACTTGAGCGTAAGCCTATTTTTGCACGTGTTACATA--ACTCTCTCCTCATTCATGG-CTGGGAACACTTCCCTATGAATGGTGTTCACACTGAGGCAGAAGGCACGCCCTC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1792841 112 - 4212913 ACTTGAGTGTAAGCCTGTTTTTGCATATGTTACATAACACTCTCTCCTCATTCATGGACAGGGAACACTTCCCTATGAATGGTGTTCACATTGAGGCAGAAGACACTCCCTC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3568441 112 - 46489110 ACTTGAGCGTAAGCCTATTTTTGCATATGTTACATAACACTCTCTCCTCGTTCATGGACAGGGAACGCTTCCCTATGAATGGTGTTCACACTGAGGCAGAAGACACTCCCTC i panTro2.chr21 C 0 C 0 s echTel1.scaffold_291397 35647 106 - 40634 ATTTGAACATAG--CTAATTTT--ATATGTTACATAGCAGTTTCCTCTCATCCATTGGTAGTAAAAATTTCCCTGTGAATGGTATTCGTATCTAGGGAAAATTTACTCTC-- i echTel1.scaffold_291397 N 0 N 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=32819.000000 s hg19.chr21_gl000210_random 12274 52 + 27682 CCTTGCGGAGAGAAGAGGCGGAGCTCCCGTTGCAAAGTCTGCAGCCACAGGT s panTro2.chr21 3568553 52 - 46489110 CCTTGCGGAGAGAAGAGGCGGAGCTCCCGTTGCAAAGTCTGCAGCCACAGGT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1792953 52 - 4212913 CCTCGCGGAGAGAAGAGCCGGAGCTCCCATTGCAAAGTCTGCAGCCACAGGT i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3438081 52 + 196418989 CCTGGCGGAGAGAAGAGCCGGAGCTCCCGCTGCAAAGTCTGCAGCCACAGGT i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_278351 1692 51 + 1901 CCTGGCAGGGAAAATGGCTCTTGCTCCC-CTGATAAGTCTGCAGCCCTTGAA i tarSyr1.scaffold_278351 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e danRer6.Zv8_NA5719 6527 1552 - 28660 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=72586.000000 s hg19.chr21_gl000210_random 12326 133 + 27682 --GGGGAGGCCTTGGGGGTGCTCCTGGGAATACGGGCAGAC----AGGTGGATGCCCCAC----GT--------CGGCTCCCA-CTGGGTGAAGCCTCGTCCTGCTGCTGACTGGACCTGCTAGGGACGGGGGCAGACTCTTCAGGTCCCCA s tarSyr1.scaffold_278351 1743 143 + 1901 --GG--ATGCCTCTGGGG-TCCCCTGGGAACACGAGCAGACGGAGGGGTAGCTGCCTCCC----ATTCCCAACCCTGCTCCCATCTTGGCGAAGCCTCCTCCTGCCACCTGCTGATAGAGTTCTGGACAGTGGCACACCCTTCAGGCCTCCA i tarSyr1.scaffold_278351 C 0 N 0 s rheMac2.chr3 3438133 133 + 196418989 --GG--AGGCTCCGGGG--GCTCCTGGGAACACGGGCAGAC----AGGTGGATGCCCCACATCAGT--------CAGCTCCCA-CTGGGTGAAGCCTCATCCTGCTGCTGGCTGGACCTGCTAGGGACGGGGGCAGACTCTTCCGGCCCCCA i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1793005 130 - 4212913 --GG--AGGCCTCAGGGG-GCTCCTGGGAACACGGGCAGAC----AGGCGGGCGCCCCAC----AT--------CGGCTCCCA-CTGGGTGAAGCCTCATCCTGCTGCTGGCTGGACCTCATAGGGACGGGGGCAGACTCTTCAGGTCCCCA i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3568605 131 - 46489110 --GG--AGGCCTTGGGGGCGCTCCCGGGAACACGGGCAGGC----AGGTGGATGCCCCAC----GT--------CGGCTCCCA-CTGGGTGAAGCCTCGTCCTGCTGCTGACTGGACCTGCTAGGGACGGGGGCAGACTCTTCAGGTCCCCA i panTro2.chr21 C 0 C 0 s danRer6.Zv8_NA5719 8079 92 - 28660 GGGG--GCACCCTGGGGCCTCTACTGCAAGTCCAGGGAGAG----AGGTGGA--CCCCTG----GA--------TAGCTAGCT-GGGGTCAGAGGCCC----------------------TTAGGTGCAGGGCCA----------------- i danRer6.Zv8_NA5719 I 1552 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=98977.000000 s hg19.chr21_gl000210_random 12459 206 + 27682 CAGAGCAGACTGG------CTGTGACAGT---GGGCTGGATGGTGGCCCCTCGGGGAGCTGAACACACCACCAGGGCCACACGAGAGGATCCGGTGGGGAGGGACAGGAAACACCCC--GGCCAGCTCACCTGGGCGGGATCACAGAGGCTTGAGTTCTAAGCTAAGGA-CTTCGGGCTACTTGGTGGGCCCTGAGAAGACAAAGGCAAGACCCAGGG s rheMac2.chr3 3438266 194 + 196418989 CAGAGCAGGCTGG------CTGTGACAGT---GGGCTGGAGGGTGGCCCCTCGGGTGGCTGAGCGCACCACCAGGACCACACGAGAGAATCCGATGGGGAGGGACAGGAAACGCCCC--GGCCAGCTCACCTGGGT---------GAGCCTTGAGTTCTAAGC---GGA-CTTTGGGTTACTTGGCGGGTCCTGAGAAGACAAAGGCAAGACCCAGGG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1793135 206 - 4212913 CAGAGCAGGCTGG------CTGTGACATT---GGGCTGGATGGTGGCCCCTCGGGGAGCTGAGCAGACCACCAGGACCACACGAGATGATCCAGTGGGGAGGGACAGGAAACACCCT--GGCCAGCTCACCTGGGCGGGATCACAGAGGCTTGAGTTCTAAGCTAAGGA-CTTTGGGCTACTTGGTGGGCCCTGAGAAGACAAAGGCGAGACCCAGGG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3568736 205 - 46489110 CAGAGCAGACTGG------CTGTGACAGT---GGGCTGGATGGTGGCCC-TCGGGGAGCCAAACACACCACCAGGACCACACGAGAGGATCCGGTGGGGAGGGACAGGAGACACCCC--GGCCAGCTCACCTGGGCGGGATCACAGAGGCTTGAGTTCTAAGCTAAGGA-CTTTGGGCTACTTGGTGGGCCCTGAGAAGACAAAGGCAAGACCCAGGG i panTro2.chr21 C 0 C 0 s danRer6.Zv8_NA5719 8171 187 - 28660 GGGGGCACCCTGGGGCCTCTAGTGCAAGTCCAGGGATAGTTGTGGACCCCGTGG---------TAGATTCCTAGGGTC-----TGAGGACCCTAGGTGGAGGGCCAGGGGGCACCCTTGGGCCTATAC-----TGCAAGTCCATTGAGA---GAGGT---------GGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCCAGGG i danRer6.Zv8_NA5719 C 0 N 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=325603.000000 s hg19.chr21_gl000210_random 12665 683 + 27682 CCTGCCGGGGAGTGGCCGGAGCTTGCACAAGAGCCAGGCTCGCCTTCACCCGGGACCGAAGGCACACACCGTCTCTGGGTGCCACTGACTGGACAAAGACAAGAGGCCCCTGACGGCTTTCTACTTGGCCCATTAGCCTCAtgaaccacaaagtcacatttgtaatcaatcctataattctgttttgagtagcacaattaggccgctttgaatttttatgagctaaacgttgattcgttaactataaacattgcattccaccatttccgaaacactgttttggacttatttttttt----aGGGGACTAAAAAAAA-ATGGGATGGGTCACCTCCAAGAAGCCCAGCCAGACCTCATCCTACAGGGCTTGTTTTCGTCACAAAGGACCGCGGGGCCCTGGGAGGGTGGGGAGGACACAGCC---------GAGGCGGCTGATTTTTCATGGCAGGAGCAGGAGAGTGCCCCACAACCTCGGCTCCAGCGATCCTCCCACTGCAGAGAATGGGACGGGGCAGGAACTGTCAGTTCCACAGTGAAATATCCCCGGAGCCAGGCAGAGAAATCCATGCTCTGCCCATGCACCGGGTGTGTGATTGTGTGCGGAGGGCCCAGCTGTGTCACGAGGACCCCCAGCGATGCCCGCACCACTGGGCTTCCCCAGACAGGCCTCCCCCACGAGCCATCTGGTGGT s rheMac2.chr3 3438460 690 + 196418989 CCTGCCGGGGAGTGGCCAGGGCTTGCACGAGGGCCGGGCTCGCCTTCACCCAGGACCGAAGGCACACACAGCCTCTGGGCGCTGCCAGCTGGAGAAAGACAAGAGGCCCCTGATGCCTTTCAACTCGGCCCGTTAGCCACGTGAACCACAAAGTCACATTTGTAATAAATCCTATAATTCTGTTTTGAATAGCACAGTTAGGCCGCTTTGTGTTTTTATGAGCTAAACGTTAATTCATTAACTATAAACATTGCATTCCACCATTTCTGAAACACTGTTTTGGTTTTTTTTTTTTT-TTTAGGGGACTAAAAAAAC---GGGATGGGTCACCTCCAAGAAGCCCAGCCAGACCTCATCCCACAGGGCTTGTTTTCGTCACGACGGACCGCAGGTTCCCGGGAGGGTGGTGAGGACACAGCCTGAGCTGGCAAGGCCGCTGGTTTTCCACAGCAGGGGCAGGAGACTACCCCACCACCTCGGCTCCAGTGATCCTCCCACCGCAGGGAACGGGAC-GGGCAGGACCTGACAACTCCACAGTGAAATA-ACCCAGAGCCAGGCGGAGAAATCCATGCTCTGCCCGTGCACCGAGCGCGTGATCGTGTACGGAGGGCCCAGCTGTGACACGAGGACCCC-AGCGGTGCCTACGCCACCGGGCCTCCCCACGCAGGCCTCCCCAGCGAGCCACCTGGTGGT i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1793341 696 - 4212913 CCTGCCGGGGAGTGGCCGGGGCTTGTACAAGAGCTGGGCTCGCCTTCACCCAGGACCGAAGGCGCACACAGCCTCTGGGTGCCACCGACTGGAGAAAGACAAGAGGCCCCTGATGCCTTTCAACTTGGCCCATTAGCCACAtgaaccacaaagtcacatttgtaataaatcctataattctgttttgaatagcacaattaggccgctttgtatttttatgagctaaactttaattcgttaactataaacattgcattccaccatttccgaaacactgttttggattttttttttttttTTACGGTACTAAAAAAAAAATGGGATGGGTCACCTCCAAGAAGCCCAGCTAGACCTAATCCCACAGGGCTTGTTTTCATCACAAAGGACGGCAGGGCCCCGGGAGGGTGGGGAGGACACAGCCTGAGCTGGTGAGGCAGCTGGTTTTTCACAGCAGGGGCAGGAGAGCGCCCCACCACCTTGGCTGCAGCACTCCTCCCACTACAGGGAATGGGACGGGGCAGGAACTGGCAGTTCCACAGTGAAATATCCCCAGAGCCAGGTAGAGAAATCCATGCTCTGCCCAGGCACCGGGTGCGTGATCGTGTGCGGAGGGCCCAGCTGTGACACGAGGACCCC-AGCGGTGCCCGCGCCGCTGGGCTTCCCCAGACAGGCCTGCCCCATGAGCCATCTGGCAGT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3568941 682 - 46489110 CCTGCCGGGGAGTGGCCGGGGCTTGCACAAGAGCCAGGCTTGCCTTCACCCGGGACCGAAGGCACACACCGTCTCTGGGTGCCACCGACTGGAGAAAGACGAGAGGTCCCTGACGGCTTTCAACTTGGCCCATTAGCCTCATGAACCACAGAGTCACATTTGTAATCAATCCGATAATTCTGTTTTGAGTAGCACAATTAGGCCGCTTTGTATTTTTATGAGCTAAACGTTGATTCGTTAACTATAAACATTGCATTCCACCATTTCTGAAACACTGTTTTGGATTTTTTTTTTTT--TTAGGGGACTAAAAAAAA--TGGGATGGGTCACCTCCAAGAAGCCCAGCCAGACCTCATCCTACAGGGCTTGTTTTCGTCACAAAGGACCGCGGGGCCCTGGGAGGGTGGGGAGGACACAGC----------GAGGCGGCTGATTTTTCACGGCAGGAGCAGGAGAGCGCCCCACCACCTCGGCTCCAGCGATCCTCCCACTGCAGGGAATGGGACGGGGCAGGAACTGTCAGTTCCACAGTGAAATATCCCCAGAGCCAGGCAGAGAAATCCATGCTCTGCCCATGCACCGGGTGTGTGATTGTGTGCGGAGGGCCCAGCTGTGTCACGGGGACCCC-AGCAGTGCCCGCGCCACTGGGCCTCCCCAGACAGGCCTCCCCCACGAGCCATCTGGCGGT i panTro2.chr21 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=164958.000000 s hg19.chr21_gl000210_random 13348 295 + 27682 TCCCTTGCTGGCCGAGTTGTCTCCTTTGAGGCTGTCTCTACCTGGCATGAATTCTGCCCTG-AGCTTACTCT--------TCCCAAA--GCTTCACTGCTTCCTTCTTGACAAATGTCATGCC--------TGTGATTTGGAGGGGACTTTCAGGAACCTGCCCTCATCAAGGCAGGATGACAGGCCAGGCACAAACCCAGTAGACATATTCCTCTC-----CAAACAGCCCCACGGTCTCCCGCCAGCTCTTGGGAATACATGGACTGTGAATGAAAGTTGACCAAGGAGGTCAGAAATTAAGTCAACTCAGAGAA--AT s proCap1.scaffold_62353 5092 310 - 15406 TCTCATCTTGGCTGAGTCACCTACTTTTAGGTCATATCTACTAAGCACAAATTCTGTTCTGAAGCTCACTCTACTGCTACTTCCAAATTGCATTATTGTTAACTTATTAAc--ttgctttgccttgggccttgtactttggaaagtacttccacaaacattacctcattttggctttatggcaatgcag---taaACAAAGTTGATCTCTCTCTCTCTCTCTCAACCAGCTCATTCTTTTTCTTTCT-CTCTTGACAATACTCAGAGTGGAGATGAAACT--GCAAAGGAGAT-AAAAATATAGTCAGCAGGTAGAA--GT i proCap1.scaffold_62353 N 0 C 0 s rheMac2.chr3 3439150 283 + 196418989 TCCCACGCTGGCC--------------ATGGCTGTCTCTGCCTGGCATGAATTCCGCCCCA-AGCTCACTCT--------TCCCAAA--GCTTCACTGCTTCCTTCTTGACAAATGTCACGCC--------TGTGACTTGGAGGGGACTTTCAGGGACCTGCCCTCACCTGGGCAGGATGACAGGCCAGGCGCAAACCCAGGACACACGTTCTTCTC-----CAAACAGCCCCACAGTCTCCCGCCTGCTCTTGGGAATACACAGACTGTGAATGAAAGTTGACCAAGGAGGTCAGAAATTAAGTCAACTCAGAGAAATAT i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794037 295 - 4212913 TCCCTTGCTGGCCGAGGTGTCTCCTTTGAGGCCGTCTCTACCTGGCATGAATTCCGCCCTG-AACTCACTCT--------TCCCAAA--GCTTCACTGCTTCCTTCTTGACAAATGTCATGCC--------TGTGATTTGGAGGGGACTTTCAGGAACCTGCCCTCATCTGGGCAGGATGACAGGCCAGGCACAAACCCAGTAGACACATTCCTCTC-----CAAACAGCCCCACCGTCTCCCACCTGCTCTTGGGAATACATGGACTGTGAATGAAAGTTGACCAGGGAGGTCAGAAATTAAGTCAACTCAGAGAA--AT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3569623 295 - 46489110 TCCCTTGCTGGCCGAGTCGTCTCCTTTGAGGCTGTCTCCACCTGGCATGAATTCTGCCCTG-AGCTTACTCT--------TCCCAAA--GCTTCACTGCTTCCTTCTTGACAAATGTCATGCC--------TGTGATTTGGAGGGGACTTTCAGGAACCTGCCCTCATCTGGGCAGGATGACAGGCCAGGCACAAACCCAGCAGACACATTCCTCTC-----CAAACAGCCCCACGGTCTCCCACCAGCTCTTGGGAATACATGGACTGTGAATGAAAGTTGACCAAGGAGGTCAGAAATTAAGTCAACTCAGAGAA--AT i panTro2.chr21 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=17620.000000 s hg19.chr21_gl000210_random 13643 49 + 27682 CA-CCTCCGCAAA-TTCGGCCACACCAGTGCAGAG-------------------CCCCTAACCTACCAAA s panTro2.chr21 3569918 49 - 46489110 CA-ACTCCGCAAA-TTCAGCCACACCGGTGCAGAG-------------------CCCCTAACCTACCAAA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1794332 49 - 4212913 CA-CCTCCGCAAA-TTCGGCCACACCGGTGCAGAG-------------------CCCCTAACCTACCAAA i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3439433 43 + 196418989 CA-CCTCCGCAAA-TTCAGCCACACCGATGCAGAG-------------------CCCCTAACCT------ i rheMac2.chr3 C 0 I 54 s proCap1.scaffold_62353 5402 70 - 15406 CGTTCTCCCCAGGTTTCTGCCTCACTAGTTGAGAGACACTAAGAGTGTTAAAAATCCCTAAGCTACTGAA i proCap1.scaffold_62353 C 0 C 0 s xenTro2.scaffold_6699 2530 46 + 3320 CA-CATCCACATA-CTGGGCATCTCT-GTACTGGG-------------------CACATCCACAT--ACT i xenTro2.scaffold_6699 N 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-3174.000000 s hg19.chr21_gl000210_random 13692 57 + 27682 GAGTA-TTTCCTGGCATGGGCAC--CCAT---CAGGATTTGTGT-----GGAGACGCCTCC-TCACCTG s danRer6.chr16 15147105 45 - 51890894 GAACA-GGTTCTGGT-CTGGTGT---------CAGGATCT---------GGTGCAATCTCAGGCA---- i danRer6.chr16 N 0 C 0 s xenTro2.scaffold_6699 2576 41 + 3320 GGGCA-TCTCTATAC-TGGGCACATCCACATACTGGAACTGGG-------------------------- i xenTro2.scaffold_6699 C 0 T 135 s ponAbe2.chr21_random 1794381 57 - 4212913 GAGTA-TTTCCTGGCAAGGGCAC--CCAT---CAGCATTTTTGT-----GGAGACACCTCC-TCACCTG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3569967 57 - 46489110 GAGTA-TTTCCTGGCATGGGCAC--CCAT---CAGGATTTGTGT-----GGAGAAACCTCC-TCACCTG i panTro2.chr21 C 0 C 0 s proCap1.scaffold_62353 5472 45 - 15406 GAATGTTTTCCTGGC-----------------------TTTTGTCCAACTGTGACGTCTCC-TCACTTG i proCap1.scaffold_62353 C 0 I 106 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3439476 54 + 196418989 I a score=19427.000000 s hg19.chr21_gl000210_random 13749 95 + 27682 CCATCTCTGTGGTGGAGACA----CCTCCTCATTTGCCGT----CTCTGTGCTGGGGACACACCCTCACCTGG--TGTCTGTAGTGGGGACACCTCCTCACCTGC s ponAbe2.chr21_random 1794438 94 - 4212913 CCGTCTCTGTGGTGGAGACA----CCTCCTCATTTGCCAT----CTCTGTGCTGGGGACACACCCTCACCTGG--TGTCTGTGGTGGGGACACC-CCTCACCTGC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3570024 95 - 46489110 CCATCTCTGTGGTGGAGACA----CCTCCTCATTTGCCGT----CTCTGTGCTGGGGACACACCCTCACCTGG--TGTCTGTAGTGGGGACACCTCCTCACCTGC i panTro2.chr21 C 0 C 0 s ornAna1.Contig51460 673 83 - 3804 TCGTGTCTCTGCTCTAAGAA----CCCC------TGGTGT----CTCTGCTCCCCGCACCTCCACGCCCCTGG--TGTGTCTGCTCCCTGCACC------CTTGG i ornAna1.Contig51460 N 0 C 0 s xenTro2.scaffold_6699 2482 97 + 3320 GCATCTCTATACTGGGCACA----TCCACATACTGGGCAT----CTCTATACTGGGCACATCCACATACTGGGCATCTCTGTACTGGGCACATCCACATACTGGG i xenTro2.scaffold_6699 T 135 C 0 s danRer6.chr16 15147150 93 - 51890894 TGGTGTCAGGAGGTAGGACA----AGTTCTGACATGGTGTCAGGCTCTG------GGACAGGCTCTAGTTTGA--TGTCAGGATTTGGGACATGTTCTGGTATAG i danRer6.chr16 C 0 C 0 s petMar1.Contig84487 18 96 + 4603 -GCGGTGCGAGACGGAGACGGTGTCCCCCTGCTGCGAGAT----CTCAGTGCTGGTGTCCCCCTGCTGCGTGA--TCTCTGTGCTGGTGTCCCCCTGCTGCGC-- i petMar1.Contig84487 N 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3439476 54 + 196418989 I a score=-14877.000000 s hg19.chr21_gl000210_random 13844 134 + 27682 TGTCTCTGTGCTGGGGACA------------------------CCCCTCACCTGCTGTCACTGTGCTGGGGACACCTCCTCA--CCTGCTGTCTCTGTGCTGGGGACACCCCT-CACCTGCTGTCTCTGTGGTGGGGACACCTCCTCACCTGCTGTCTCTG s ponAbe2.chr21_random 1794532 132 - 4212913 TGTCTCTCTGGTGGGGATA-----------------------CCCCCTCACCTGCTGTCACTGTGCTGGGGACACCCCCTCA--CCTGATGTCTCTGTGCTGGGGACACCCTT-CACCTGCTGTCACTGTGCTGGGGACACTCCCTCACCTGGTGTCT--- i ponAbe2.chr21_random C 0 T 32 s panTro2.chr21 3570119 134 - 46489110 TGTCTCTGTGCTGGGGACA------------------------CCCCTCACCTGCTGTCACTGTGCTGGGGACACCTCCTCA--CCTGCTGTCTCTGTGCTGGGGACACCCCT-CACCTGCTGTCTCTGTGGTGGGGACACCTCCTCACCTGCTGTCTCTG i panTro2.chr21 C 0 C 0 s ornAna1.Contig51460 756 111 - 3804 TGTCTCTGCTCCCTGAATC-----------------------TCCACACCCCTCGTGTCTCCGCGCC-----------------CCTGGTGTCTCTGCTCCCCGCATCTCCATGCCCCTGGTGTCTCTGTTCTCCGCACCCCTC--------GTGTCTC-- i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 2579 153 + 3320 CATCTCTATACTGGGCACATCCACATACTGGAACTGGGCACATCCACATACTGGGCATCTCTGTACT--GGGCATCTCTAAA--CTGGGCATCTCTGTACTGGGCATCTCTAT--ACTGGGCATCTCTGTACTGGG--CATCTCTATACTGGGCATCTCTG i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10262843 82 + 14603141 tgtctctgtct------------------------------------------------------tt--ctcccggtccttgtctctgtctt--------------tctccct-ctccttgtctc--------tgccccggtctttcccacggtctctgtc i gasAcu1.chrXVII N 0 C 0 s danRer6.chr16 15147243 115 - 51890894 TGTCAGCTTCT--GGGACA-----------------------GGCTCTAGCATGATGTCAGGATGTT--GGACAGGTTCTGG--TCTGGTGT--------------AATCTCA-GGCATGGTGTCA--GGAGGTAGGACAAGTTCTGGCATGGTGTCAGGC i danRer6.chr16 C 0 C 0 s petMar1.Contig84487 114 98 + 4603 -------------------------------------------------------CAAATCCGTGCT--GGTGTCCTCCTGC--TGCGCGATCTCTGTGCTGGTG-TCCCCCT-GCTGCAAGATCTCTGTGCTGGTGTCCCCCTGCTGCACGATCTCAG-- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3439476 54 + 196418989 I a score=-4287.000000 s hg19.chr21_gl000210_random 13978 4 + 27682 TGC--------------------------------T s panTro2.chr21 3570253 36 - 46489110 TGCTGGGGACACCCCCTCACCTGGTGTCTCTGTGAT i panTro2.chr21 C 0 C 0 s ornAna1.Contig51460 867 4 - 3804 TGC--------------------------------T i ornAna1.Contig51460 C 0 I 3 s xenTro2.scaffold_6699 2732 4 + 3320 TAC--------------------------------T i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10262925 3 + 14603141 -cc--------------------------------t i gasAcu1.chrXVII C 0 C 0 s danRer6.chr16 15147358 3 - 51890894 -TC--------------------------------T i danRer6.chr16 C 0 C 0 s petMar1.Contig84487 212 4 + 4603 TGC--------------------------------T i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1794664 32 - 4212913 T e rheMac2.chr3 3439476 54 + 196418989 I a score=-17864.000000 s hg19.chr21_gl000210_random 13982 65 + 27682 GGGGACACC--CCTCACCTGCTG-TCTCTATGGTGGGGACACCCCCTCACCTGC-TGTC--------TCTGTGGTGG s otoGar1.scaffold_115487.1-47341 10181 68 + 47341 GGGGCCACCCACCTCACTGAGTG-TCCCTCTGCAGGGGCCACCTGCTCCACTGAGTGTC--------CCTCTGCAGG i otoGar1.scaffold_115487.1-47341 N 0 C 0 s panTro2.chr21 3570289 65 - 46489110 GGGGACACC--CCTCACCTGCTG-TCTCTGTGGTGGGGACACCCCCTCACCTGC-TGTC--------TCTGTGGTGG i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1794632 39 - 4212913 ---------------------------CTGTGCTGGGGACACTCCCTCACCTG---GTG--------TCTGTGGTGG i ponAbe2.chr21_random T 32 C 0 s ornAna1.Contig51460 874 65 - 3804 CGCATCTCC--ACGCCCCTGGTG-TCTCTGCTCCCCGCATCTCCGCGCCCCTGG-TGTC--------TCTGCTCTCT i ornAna1.Contig51460 I 3 C 0 s xenTro2.scaffold_6699 2736 62 + 3320 -GGGCATCT--CTATACTGGGCA-TCTCTGTACTGGG--CATCTCTATACTGGG-CATC--------TCTGTGCTGG i xenTro2.scaffold_6699 C 0 I 13 s gasAcu1.chrXVII 10262928 65 + 14603141 --------C--TCCCGTTCTCTG-CTCCGGGATCTGTCCCGTCTCCTGTCGCGC-TCTCGGTTCCTCGCTCTGTCGC i gasAcu1.chrXVII C 0 I 4 s danRer6.chr16 15147361 65 - 51890894 GGGAAAGGC--TCTAGTTTGGTG---TCAGGATTTGGCACAGGTTCTTGCATGG-TGTCAG------GCTCTAGGAC i danRer6.chr16 C 0 N 0 s petMar1.Contig84487 216 62 + 4603 --GGTGTCC--CCCTGCTGCGCGATCTCTGTGCTGGTGTCCCCCTGCTGCACGA---TC--------TCAGTGCTGG i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I e rheMac2.chr3 3439476 54 + 196418989 I a score=-5973.000000 s hg19.chr21_gl000210_random 14047 23 + 27682 GGAC-ACCCACTCACCTGCTGTCT s panTro2.chr21 3570354 23 - 46489110 GGAC-ACCTCCTCACCTGCTGTCT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1794671 23 - 4212913 GGAC-ACCCCCTCACCTGCTGTCA i ponAbe2.chr21_random C 0 C 0 s dipOrd1.scaffold_30271 2999 23 - 16544 AGGC-AGCCCCCCACCAAACCCCA i dipOrd1.scaffold_30271 N 0 N 0 s otoGar1.scaffold_115487.1-47341 10249 22 + 47341 -GGC-CCTACCTCACTGAGTGTCC i otoGar1.scaffold_115487.1-47341 C 0 C 0 s rheMac2.chr3 3439530 22 + 196418989 -gac-accccgtcacctgctctct i rheMac2.chr3 I 54 C 0 s ornAna1.Contig51460 939 23 - 3804 GCAT-CTCCACGCCCCTGGTGTCT i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 2811 23 + 3320 GGGC-ATCTCTGTACTGGGCATCT i xenTro2.scaffold_6699 I 13 C 0 s gasAcu1.chrXVII 10262997 24 + 14603141 AGAATCCCTTCGGTCAGAATCCCT i gasAcu1.chrXVII I 4 I 4 s danRer6.chr18 39536428 17 - 49271716 --ATCCACTTTTCTCCTGA----- i danRer6.chr18 N 0 I 4 s petMar1.Contig84487 278 21 + 4603 TGTC-CTCCTGCTGCACGATCT-- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=7531.000000 s hg19.chr21_gl000210_random 14070 34 + 27682 CTGTGGTGGGGACAC-------------------------------CCCCTCATCTGATGTCTCT s otoGar1.scaffold_115487.1-47341 10271 34 + 47341 CTCTGCAGGGGCTCC-------------------------------TACCTCACTGAGTGTCCCT i otoGar1.scaffold_115487.1-47341 C 0 C 0 s rheMac2.chr3 3439552 34 + 196418989 ctgtgctggggacac-------------------------------cccgtcacctgctgcctct i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794694 34 - 4212913 CTGTGCTGGGGACAC-------------------------------TCCCTCACCTGGTGTCTCT i ponAbe2.chr21_random C 0 T 64 s panTro2.chr21 3570377 65 - 46489110 CTGTGGTGGGGACACCTCCTCACCTGCTGTCTCTGTGGTGGGGACACCCCTCACCTGGTGTTTCT i panTro2.chr21 C 0 C 0 s ornAna1.Contig51460 962 34 - 3804 CTGCTCCCCGCATCT-------------------------------CCGCGCCCCTGGTGTCTCT i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 2834 34 + 3320 CTATACTGGGCACAT-------------------------------ACACATACTGGGCATCTAT i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263025 22 + 14603141 ctgt-------------------------------------------ccctttcccggtctctct i gasAcu1.chrXVII I 4 C 0 s danRer6.chr18 39536449 31 - 49271716 CTGTTGAAGGAG----------------------------------GCCTTGACCCAGGTCCTCT i danRer6.chr18 I 4 C 0 s petMar1.Contig84487 299 32 + 4603 CAGTGCTGGTGTCCC-------------------------------CCTGCTGCACGATCTCT-- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=6147.000000 s hg19.chr21_gl000210_random 14104 25 + 27682 GTGGTGGGGACACCCCCTCACCTGC s panTro2.chr21 3570442 25 - 46489110 GTGGTGGGGACACCCCCTCACCTGC i panTro2.chr21 C 0 I 283 s ponAbe2.chr21_random 1794664 25 - 4212913 GTGGTGGGGACACCCCCTCACCTGC i ponAbe2.chr21_random T 64 C 0 s rheMac2.chr3 3439586 25 + 196418989 gtgctggggacacctcctcacctgc i rheMac2.chr3 C 0 C 0 s otoGar1.scaffold_115487.1-47341 10305 25 + 47341 CTGCAGGGGCCCCTACCTCACTAAG i otoGar1.scaffold_115487.1-47341 C 0 C 0 s ornAna1.Contig51460 996 25 - 3804 GTTCTCCGCATCTCCACGCCCCTGG i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 2868 25 + 3320 ATACTGGGCACATCCACATAGTGGG i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263047 15 + 14603141 ----------cccgctctctccttt i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536480 18 - 49271716 -------TGGTCCACCCTTCCCAAC i danRer6.chr18 C 0 C 0 s petMar1.Contig84487 331 23 + 4603 GTGCTGGTGTCCTCCTGCTGCAC-- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-6101.000000 s hg19.chr21_gl000210_random 14129 76 + 27682 TGTCTCTGTGCTG------GGGACA-C-C--CC-TCACCTGGTGTCTGTG-TGCTGGGGACACC-----------CCCTCAC---CTGCTGTC----TCTCTGGTG s gorGor1.Supercontig_0049662 41292 74 + 54198 --TCTCTGTGCTG------GGGACA-C-C--CC-TCACCTGGTGTCTCTG-TGCTGGGGACACC-----------CCCTCAC---CTGCTGTC----TCTCTGGTG i gorGor1.Supercontig_0049662 N 0 I 185 s rheMac2.chr3 3439611 73 + 196418989 --tgtctgtgctg------gggaca-c-c--cagtcacctggtgtc--tg-tggaggggacacc-----------cccttac---ctgctgcc----tctgtgctg i rheMac2.chr3 C 0 C 0 s otoGar1.scaffold_115487.1-47341 10330 78 + 47341 TGTCCCTCTGCAG------GGGCCA-C-CCACC-TCACTGAGTGTCCCTC-TGCAGGGGCCCCT-----------ACCTCAC---TGAGTGTC----CCTCTGCAG i otoGar1.scaffold_115487.1-47341 C 0 C 0 s ponAbe2.chr21_random 1794689 74 - 4212913 TGTCACTGTGCTG------GGGACA-CTC--CC-TCACCTGGTGTCTCTG-TGCTGGGGACACC-----------CCCTCAC---CTGATGTC----TCTCTG--- i ponAbe2.chr21_random C 0 T 61 s panTro2.chr21 3570750 76 - 46489110 TGTCTCTGTGCTG------GGGACA-C-C--CC-TCACCTGGTGTCTCTG-TGCTGGGGACACC-----------CCCTCAC---CTGCTGTC----TCTGTGGTG i panTro2.chr21 I 283 C 0 s macEug1.Scaffold56037 715 57 + 11104 --------------------------C-C--CA-TCAGCTGGTGACCACA-TTTCTGGAAAACT-----------CCATCAC---CTGGTGACTACATTTCT---- i macEug1.Scaffold56037 N 0 C 0 s ornAna1.Contig51460 1021 63 - 3804 TGTCTCTGCTCT--------------C-C--GC-ACCCCTGGTGTCTCTG-CTCCCCACATCTC-----------CACGCCC---CTGGTGTG----TCT------ i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 2893 83 + 3320 CATCTCTGTACTG------GGCACATC-C--AC-ATACTTGGCATCTCTA-TACTGGGCATCTCTATACAGGGCACATCCAC---ATATTGGA----ACTG----- i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263062 71 + 14603141 tgtctgtgtcttgatctctatgacg-c-t--ct-ccctccgtc-tccctg-cgcctctcaccct-----------ccctcgct--ctgctg--------------- i gasAcu1.chrXVII C 0 I 1 s danRer6.chr18 39536498 66 - 49271716 --ACCGTGCTTAG------GAGATT-C-A--CC-CCCACCTGT-TCCATGTTGCAATCCACCCC-----------TACCCGCTCCCTGCTG--------------- i danRer6.chr18 C 0 I 1 s petMar1.Contig84487 354 48 + 4603 GATCTCCGTGCTG------GTGTC--C-C--CC-TGCTGCGCGATCTCTG-TGCTGGTGTC--------------------------------------------- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=6808.000000 s hg19.chr21_gl000210_random 14205 24 + 27682 GGGACACAC--CCTCACCTGGTGTCT s otoGar1.scaffold_115487.1-47341 10408 26 + 47341 GGGCCCCCCTACCTCACTGAGTGTCC i otoGar1.scaffold_115487.1-47341 C 0 C 0 s rheMac2.chr3 3439684 23 + 196418989 gggacaccc--ggtcacctggtgtc- i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794702 24 - 4212913 GGGACACTC--CCTCACCTGGTGTCT i ponAbe2.chr21_random T 61 C 0 s gorGor1.Supercontig_0049662 41551 23 + 54198 GGGACACAC--CCTCACCTGGTGTC- i gorGor1.Supercontig_0049662 I 185 I 375 s panTro2.chr21 3570826 23 - 46489110 GGGACAC-C--CCTCACCTGGTGTTT i panTro2.chr21 C 0 C 0 s macEug1.Scaffold56037 772 24 + 11104 GGAAAACTC--CATCACCTGGTGACC i macEug1.Scaffold56037 C 0 C 0 s ornAna1.Contig51460 1084 22 - 3804 --GCTCCCC--GCACCCCTAGTGTCT i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 2976 24 + 3320 GGCACATCC--ACATACTGGGCATCT i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263134 18 + 14603141 gg-----tc--tctttctcGGCCCC- i gasAcu1.chrXVII I 1 C 0 s danRer6.chr18 39536565 24 - 49271716 GAAAGACCT--CCTCTACCAGCCCCT i danRer6.chr18 I 1 C 0 s petMar1.Contig84487 402 17 + 4603 -----CTCC--TGCTGCACGATCT-- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-19205.000000 s hg19.chr21_gl000210_random 14229 53 + 27682 CT---GTGGTGGGGA-CACCC-CCTCAC--CTGCTGTCTCTCTGGTGGGGAC----ACCC-CCTC s otoGar1.scaffold_115487.1-47341 10434 55 + 47341 CT---CTGCAGGGGC-CACCTACCTCAC--TGAGTGTCCCTCTGCAGGGGCC----GCCCACCTC i otoGar1.scaffold_115487.1-47341 C 0 C 0 s rheMac2.chr3 3439707 50 + 196418989 -t---gtgctgggga-caccc-cctcac--ctgctg--tctgtggtggggac----accc-cctc i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794726 53 - 4212913 CT---GTGCTGGGGA-CACCC-CCTCAC--CTGATGTCTCTCTGGTGGGGAC----ACCT-GGTC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3570849 53 - 46489110 CT---GTGGTGGGGA-CACCC-CCTCAC--CTGCTGTCTCTGTGGTGGGGAC----ACCC-ACTC i panTro2.chr21 C 0 C 0 s macEug1.Scaffold56037 796 53 + 11104 AC---ATTTCTGGAA-AACCC-CATCAC--CTGGTGACCACATTTCTGGAAA----ACTC-GATC i macEug1.Scaffold56037 C 0 C 0 s ornAna1.Contig51460 1106 48 - 3804 CT---GCTCCCCGCA-TCTCC-ACACCC--CTCGTGTCTCTGTTCTCCGCAC----CCC------ i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 3000 49 + 3320 CT---ATACTGGG---CATCT-CTGTAC--TGGGCATCTCTGTACTGGGCAT----CTCT-GT-- i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263152 43 + 14603141 -----GCACTGGATCGCGGTC-TCTCTC--CCGGT-----TACGCTCGGAAT----CCTG----- i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536589 53 - 49271716 -TGCAGTACAGGAGAGCCACC-CCGTCCAGCTGCT-----TGAGGTTGGAATCCACCCCG----- i danRer6.chr18 C 0 C 0 s petMar1.Contig84487 419 51 + 4603 CT---GTGCTGGTGT-CCTCC-TGCTGC--GCGAT--CTCTGTGCTGGTATC----CTCCTGCT- i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 41574 375 + 54198 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-13197.000000 s hg19.chr21_gl000210_random 14282 30 + 27682 ACCTGGTGTCTGT--GGTGG-------------------------GGACACCCCCTC s panTro2.chr21 3570902 32 - 46489110 ACCTGCTGTCTCTCTGGTGG-------------------------GGACACACCCTC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1794779 30 - 4212913 ACCTGATGTCTGT--GGTGG-------------------------GGACACCTCCTC i ponAbe2.chr21_random C 0 T 156 s rheMac2.chr3 3439757 30 + 196418989 acctagtgtctgt--ggagg-------------------------ggacaccccttt i rheMac2.chr3 C 0 C 0 s otoGar1.scaffold_115487.1-47341 10489 32 + 47341 ACTGAGTGTCCCTCTGCAGG-------------------------GGCCCCTACCTC i otoGar1.scaffold_115487.1-47341 C 0 C 0 s dasNov2.scaffold_47630 4605 29 + 11729 ACCTGCTGTCCAT---CCAG-------------------------GGGCCCCACTAC i dasNov2.scaffold_47630 N 0 I 1 s macEug1.Scaffold56037 849 32 + 11104 ACCTGGTGACCACATTTCTG-------------------------GAAAACTCGATC i macEug1.Scaffold56037 C 0 C 0 s ornAna1.Contig51460 1154 27 - 3804 ---TCTTGTCTCT--GCTCC-------------------------CCGCATCTCCAC i ornAna1.Contig51460 C 0 I 2 s xenTro2.scaffold_6699 3049 30 + 3320 ACTGGGCATCTCT--GTACT-------------------------GGGCACATCCAC i xenTro2.scaffold_6699 C 0 I 2 s gasAcu1.chrXVII 10263195 55 + 14603141 ATCTCTTTCTTGA--GGACGCTCCGAATCTATGTCTCTTTCTCGAGGACGCTCCGGA i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536642 30 - 49271716 TCCAGCTCCTTGA--GGTTG-------------------------AGATCCACCCCG i danRer6.chr18 C 0 C 0 s petMar1.Contig84487 470 30 + 4603 GCACGATCTCAGT--GCTGG-------------------------TGTCCCCCTGCT i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 41574 375 + 54198 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=14659.000000 s hg19.chr21_gl000210_random 14312 101 + 27682 ACCTG--GTGT--CTGTGGT--GGGGACACCC-CCTCACCTGATGT--CTGTGGTGGGGACACCCCCTCACCTGGTG--TCTGTGGTGGGGACACCCCCTCACCTG-ATGTCT s otoGar1.scaffold_115487.1-47341 10521 109 + 47341 ACTGA--GTGTCCCTCTGCA--GGGGCCACCTACCTCACTGAGTGTCCCTCTGCAGGGGCCCCCACCTCACTGAGTGTCCCTCTGCAGGGGCCACCTGCTCTACTGAGTGTCC i otoGar1.scaffold_115487.1-47341 C 0 C 0 s panTro2.chr21 3570934 100 - 46489110 ACCTG--GTGT--CTGTGGT--GGGGACAGCC-CCTCACCTGGTGT--CTGTGGTGGGGACAGCCCCTCACCTGGTG--TCTGTGGTGGG-ACACCCCCTCACCTG-GTGTCT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1794653 105 - 4212913 ACCTG--GTGT--CTGTGGT--GGGGACACCC-CCTCACCTGCTGTCACTGTGCTGGGGACACTCCCTCACCTGGTGTCTCTGTGCTGGGGACACCCCCTCACCTG-ATGTCT i ponAbe2.chr21_random T 156 I 5 s rheMac2.chr3 3439787 105 + 196418989 acctgctgtct--ctgtgct--ggggacaccc-ggtcacctggtgt--ctgtggaggggacacccccttacctgctgcctctgtgctggggacacccggtcacctg-gtgtct i rheMac2.chr3 C 0 C 0 s dasNov2.scaffold_47630 4635 101 + 11729 ACCTG--CTGT--CTGTCCA--GGGGCCCCGC-TGCATCCTGCTGT--CCATCCAGGGGCCCCACTACGACCTGCTG--TCCATCCAGGGGCCCCGCCGTGACCGG-CTGTCC i dasNov2.scaffold_47630 I 1 C 0 s macEug1.Scaffold56037 881 101 + 11104 ACCTG--GTGA--CCACATTTCTGGAAAACTC-GATCACCTGGTGACTACATTTCTGGAAAACTCCATCACCTGGTGACCACATTTCTGGAAAACTTCATCACCTG------- i macEug1.Scaffold56037 C 0 N 0 s ornAna1.Contig51460 1183 87 - 3804 CCCTG--GTGT--CTCTGGTCCCCGCATCTCC-ACGCCCCTCGTGTCTCTGTTCT--------CCGCACCCCTGGTG--TCTCTGCT--------CCCCGCATCTC-ATGC-- i ornAna1.Contig51460 I 2 C 0 s xenTro2.scaffold_6699 3081 81 + 3320 ACTGG--GACT-----------GGGCACATCC-ACATACTGGGCATCTCTATACTGGGCATC-----------------TCTATACTGGGCACATCCACATACTGG-GCATCT i xenTro2.scaffold_6699 I 2 I 2 s gasAcu1.chrXVII 10263250 101 + 14603141 TTCTG--ATCC--CTTTCTC--GAGGACGCTC-CGGATTCTGATCC--CTTTCTCGAGGACGCTCCGGATTCTGATC--TCTTTCTCGGGGACGCTCCGAAGCCTG-ATCTCT i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536672 101 - 49271716 TCCAG--CTCC--TTGAGGT--TGGGATCCAC-CCCGTCCAGCTCC--TTGTGGATGGGATCCACCTCGTCCAGCTC--CTTGTGGTTGGGATCCACCCTGTCCAG-CTGCTT i danRer6.chr18 C 0 C 0 s petMar1.Contig84487 500 101 + 4603 GCGCG--ATCT--CTGTGCT--GGTGTCCTCC-TGCTGCACGATCT--CAGTGCTGGTGTCCTCCTGCTGCACGATC--TCTGTGCTGGTGTCCCCCTGCTGCACG-ATCTCT i petMar1.Contig84487 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 41574 375 + 54198 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-11291.000000 s hg19.chr21_gl000210_random 14413 35 + 27682 GT--GGTGGGGACACACCCTCACCTGCT-------GTCTCTCTA s dasNov2.scaffold_47630 4736 35 + 11729 --ATCCAGGGGCCCCACTACGACCTGCT-------GTCTGTCCA i dasNov2.scaffold_47630 C 0 C 0 s gorGor1.Supercontig_0049662 41949 37 + 54198 CTCTGGTGGGGACACCCCCTCACCTGCT-------GTCTCTCTG i gorGor1.Supercontig_0049662 I 375 C 0 s panTro2.chr21 3571034 35 - 46489110 CTCTGGTGGGGACACCCCCTCACCTGGT-------GTCTCT--G i panTro2.chr21 C 0 C 0 s rheMac2.chr3 3439892 33 + 196418989 --gtggtggggacaccccctcacctgct-------gtctgta-- i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_294765 277 39 - 1803 ---TGGTTGGG--AGCCCTCAAACTGCTAAGGAGCATTTTTTGA i tarSyr1.scaffold_294765 N 0 C 0 s otoGar1.scaffold_115487.1-47341 10630 36 + 47341 -CTCTGCAGGGGCCCTACCTCACTGAGT-------GTCCCTCTG i otoGar1.scaffold_115487.1-47341 C 0 C 0 s xenTro2.scaffold_6699 3164 35 + 3320 --ATACTGGGCACATCCACATACTGGGC-------ATCTCTGTA i xenTro2.scaffold_6699 I 2 C 0 s gasAcu1.chrXVII 10263351 33 + 14603141 --TTCTCGGGGACGCTCCGAAGCCTGAT-------CTCTATC-- i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536773 33 - 49271716 --GTGGTTGAGATCCACCCCTTCCAGCT-------CCTTGTG-- i danRer6.chr18 C 0 C 0 s petMar1.Contig84487 601 32 + 4603 --GTGCTGGTGTCCTCCTGCTGCAAATC-------TCCGTT--- i petMar1.Contig84487 C 0 C 0 e ornAna1.Contig51460 1270 0 - 3804 C e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I e ponAbe2.chr21_random 1794758 5 - 4212913 I a score=-12709.000000 s hg19.chr21_gl000210_random 14448 30 + 27682 -GTGGGGACACCCC-CTCACCT-------------GGTGTCTGTG s otoGar1.scaffold_115487.1-47341 10666 28 + 47341 -CAGGGGCCGCCTACCTCACTG-------------AGTGTCT--- i otoGar1.scaffold_115487.1-47341 C 0 N 0 s tarSyr1.scaffold_294765 316 25 - 1803 -GCGTGAACACCCC--TCAGCA-----------------TTTGCA i tarSyr1.scaffold_294765 C 0 C 0 s rheMac2.chr3 3439925 30 + 196418989 -gtggggacacccg-gtcacct-------------ggtgtctgtg i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794763 30 - 4212913 -GTGGGGACACCTG-GTCACCT-------------GATGTCTGTG i ponAbe2.chr21_random I 5 C 0 s gorGor1.Supercontig_0049662 41986 24 + 54198 -GTAGGGACACCCC-CTCACCT-------------GGTG------ i gorGor1.Supercontig_0049662 C 0 I 1790 s panTro2.chr21 3571069 29 - 46489110 -GTGGGGACACCCC--TCACCT-------------GGTGTCTGTG i panTro2.chr21 C 0 C 0 s dasNov2.scaffold_47630 4771 40 + 11729 ----GGGGCCTCTG-GTGGCCTCCAACAGCCTTGGGGGGTTTGGA i dasNov2.scaffold_47630 C 0 C 0 s ornAna1.Contig51460 1270 15 - 3804 -----------------CCCTT-------------GGTGTCTCTG i ornAna1.Contig51460 C 0 C 0 s xenTro2.scaffold_6699 3199 30 + 3320 -CTGGGCACATCCA-CATACTG-------------GGCATCTCTA i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263384 30 + 14603141 -TCGGGGACGCTCC-GAAGCCT-------------GATCTCTATC i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536806 30 - 49271716 -GTTGAGAGCCTCC-CCGTCCA-------------ACTCCTTGGC i danRer6.chr18 C 0 C 0 s petMar1.Contig84487 633 31 + 4603 GCTGGTGTCCCCCT-GCTGCTC-------------GATCTTTGTG i petMar1.Contig84487 C 0 N 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-7002.000000 s hg19.chr21_gl000210_random 14478 26 + 27682 GTGGGGACAC------------CTCCTCCC-------TTGGGCAT s tarSyr1.scaffold_294765 341 26 - 1803 GTGGGGATAC------------CTCCTCAC-------CTGGGCAT i tarSyr1.scaffold_294765 C 0 C 0 s rheMac2.chr3 3439955 26 + 196418989 gtggggacac------------ctcctcCC-------TTGGGCAT i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794793 26 - 4212913 GTGGGGACAC------------CTCCTCCC-------TTGGGCAT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3571098 26 - 46489110 GTGGGGACAC------------CTCCTCCC-------TTGGGCAT i panTro2.chr21 C 0 C 0 s dasNov2.scaffold_47630 4811 25 + 11729 GT-GGCCTGT------------GTCCTCTC-------TGGGCCCT i dasNov2.scaffold_47630 C 0 C 0 s ornAna1.Contig51460 1285 2 - 3804 TT------------------------------------------- i ornAna1.Contig51460 C 0 N 0 s xenTro2.scaffold_6699 3229 33 + 3320 TACTGGGCAC------------ATCCACATACTGGAACTGGGCAC i xenTro2.scaffold_6699 C 0 C 0 s gasAcu1.chrXVII 10263414 38 + 14603141 TCGGGGACGCTCCGAAGCCTGATCTCTTTC-------TCGGGGAC i gasAcu1.chrXVII C 0 C 0 s danRer6.chr18 39536836 13 - 49271716 C---------------------TCCCCTTC-------CC----AT i danRer6.chr18 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I e felCat3.scaffold_165875 334329 17247 - 430351 I a score=-22882.000000 s hg19.chr21_gl000210_random 14504 30 + 27682 GTGTACGTGGTCAGGGC--ACCTCCTCCCC--------GG s tarSyr1.scaffold_294765 367 5 - 1803 -------------------------TTCTC---------- i tarSyr1.scaffold_294765 C 0 C 0 s rheMac2.chr3 3439981 31 + 196418989 GTCTGCATGGTCAGGAC--ACCTCCTCCTCC-------GG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794819 31 - 4212913 GTGTACATGGTCAGGGC--ACCTCCTCCCCT-------GG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3571124 30 - 46489110 GTGTACGTGGTCAGGGC--ACCTCCTCCCC--------GG i panTro2.chr21 C 0 C 0 s felCat3.scaffold_165875 351576 30 - 430351 GCATGTGCGGCC--GGC--ACCCCCTCGCCC------GGG i felCat3.scaffold_165875 I 17247 C 0 s dasNov2.scaffold_47630 4836 40 + 11729 GGGCAGGGGGGCAGCCCCAACCCCCGCTTCCAGAGGAGGG i dasNov2.scaffold_47630 C 0 C 0 s xenTro2.scaffold_6699 3262 28 + 3320 --ATCCACATACTGGGC--ATCTCTGTACT--------GG i xenTro2.scaffold_6699 C 0 T 180 s gasAcu1.chrXVII 10263452 24 + 14603141 -GCTCCGAAGCCGGATC--TCTTTCTC------------- i gasAcu1.chrXVII C 0 I 696 s danRer6.chr18 39536849 20 - 49271716 -ACCCTGTGGCTGAGGT---------CCAC---------- i danRer6.chr18 C 0 C 0 e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=5809.000000 s hg19.chr21_gl000210_random 14534 51 + 27682 CTTGTCTGTG-TGTGGGTCCCCGAGG--GAAGGGAAGCCACTTGCTTGCTAG--TC s tarSyr1.scaffold_294765 372 45 - 1803 --------TA-TGTGGTCCCCAGAAG--GAAGGGAAGCCCCTGGCTTGAGAGATTC i tarSyr1.scaffold_294765 C 0 C 0 s rheMac2.chr3 3440012 51 + 196418989 CCTGTCTGCG-TGTAGGTCCCCAAGG--GAAGGGAAGTCACTTGCTTACGAG--CC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794850 51 - 4212913 CCTGTCTGTG-TGTGAGTCCCCGAGG--GAAGGGAAGCCACTTGCTTGCTAG--CC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3571154 51 - 46489110 CTTGTCTGTG-TGTGGGTCCCCGAAG--GAAGGGAAGCCACTTGCTTGCTAG--TC i panTro2.chr21 C 0 C 0 s felCat3.scaffold_165875 351606 55 - 430351 CATTTCTCTG-AGGGGTTCCCGAAAGTCGAGAGGACGCGCCTTTCGGGAGGGTCTC i felCat3.scaffold_165875 C 0 C 0 s dasNov2.scaffold_47630 4876 28 + 11729 CA----------GGGGACCCCCGAGG--GGGCGTGCGCCA---------------- i dasNov2.scaffold_47630 C 0 N 0 s xenTro2.scaffold_6699 3110 44 + 3320 CATCTCTATACTGGGCATCTCTATAC--TGGGCACATCCACATACT---------- i xenTro2.scaffold_6699 T 180 C 0 s danRer6.chr18 39536869 48 - 49271716 --TTTGTCTC-TGAGGTCCCTGCGAG--GCTGGTTGGCCGTTCCCCTGCTGT--T- i danRer6.chr18 C 0 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=6993.000000 s hg19.chr21_gl000210_random 14585 33 + 27682 AGGAGATCATGTGCATGCTTCCCCTTCACACTC--- s tarSyr1.scaffold_294765 417 33 - 1803 CGGCACAAATGTACAGGGCCTCCCCTGATACTT--- i tarSyr1.scaffold_294765 C 0 C 0 s rheMac2.chr3 3440063 33 + 196418989 CGGAGTTCATGTGCATGCTTCGCCTTCACACTT--- i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794901 33 - 4212913 AGGAGATCATGTGCATGCTTCCCCTTCACACTT--- i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3571205 33 - 46489110 AGGAGATCATGTGCATGCTTCGCCTTCACACTC--- i panTro2.chr21 C 0 C 0 s felCat3.scaffold_165875 351661 33 - 430351 AGGGGTGCGCTTACAGGGCCTTGCGTGACGGTC--- i felCat3.scaffold_165875 C 0 C 0 s dasNov2.scaffold_94649 972 23 - 8741 AGGGGGGTGTGTGCGTG----------ACACTT--- i dasNov2.scaffold_94649 N 0 C 0 s xenTro2.scaffold_6699 3154 31 + 3320 GGGCATCTCTATACTGGGCACATCCACATAC----- i xenTro2.scaffold_6699 C 0 C 0 s danRer6.chr18 39536917 27 - 49271716 -GGTGATCCT--------TCTGCTTTGAGGATCCTG i danRer6.chr18 C 0 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e proCap1.scaffold_62353 5517 106 - 15406 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=23610.000000 s hg19.chr21_gl000210_random 14618 31 + 27682 TGGGCCTCTATGA------------ACTGCTTCCATTTGCAGC s tarSyr1.scaffold_294765 450 23 - 1803 CATGCATCTGTAA------------ACTTCTTCCA-------- i tarSyr1.scaffold_294765 C 0 I 326 s rheMac2.chr3 3440096 31 + 196418989 TGGGTCTCTGTGA------------ACTTCCTCCATTTGCAGC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1794934 31 - 4212913 TGGGCCTTTATGA------------ACTGCTTCCATATGCAGC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3571238 31 - 46489110 TGGGCCTCTATGA------------ACTGCTTCCATTTGCAGC i panTro2.chr21 C 0 C 0 s felCat3.scaffold_165875 351694 31 - 430351 TGCGTCTGCATGA------------ACCTCTTCCATTTGCAGC i felCat3.scaffold_165875 C 0 C 0 s proCap1.scaffold_62353 5623 31 - 15406 TAGACTTCAATGA------------ACTTCTTCCATTTGCAGT i proCap1.scaffold_62353 I 106 C 0 s dasNov2.scaffold_94649 995 26 - 8741 GACACCTCCATAA------------ACTTCT---GTTTGTG-- i dasNov2.scaffold_94649 C 0 C 0 s xenTro2.scaffold_6699 3185 29 + 3320 TGGGCATCTCTGT------------ACTGGGCACATCCACA-- i xenTro2.scaffold_6699 C 0 N 0 s danRer6.chr18 39536944 40 - 49271716 GAGGCTGCTGTTGTTGTTTTTCCTCACTGGTCTCATCCCC--- i danRer6.chr18 C 0 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=133452.000000 s hg19.chr21_gl000210_random 14649 183 + 27682 AAAAACACCGAGC--TCCCAGCTGCTCTGGCAAGCGCTCCAGGCTCCCATAGGCGCCCCCAC------AAAGTCAGGTT------TGTTTCCTTTGGCACATGAGGCATGGAGAATTGTAGGAAAGGAGCCTCCACCAAGCAGAGCAGATGGAGGGAGGAGGGCAGCTTCCTGCTTCCCAGGCGATGGGACCCCACA s panTro2.chr21 3571269 183 - 46489110 AAAAACACCGAGC--TCCCAGCTGCTCTGGCAAGCGCTCCAGGCTCCCATAGGCGCCCCCAC------AAAGTCAGGTT------TGTTTCCTTTGGCACATGAGGCATGGAGAATTGTAGGAAAGGAGCCTCCACCAAGCAGAGCAGATGGAGGGAGGAGGGCAGCTTCCTGCTTCCCAGGCGATGGGACCCCACA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1794965 183 - 4212913 AAAAACACCGAGC--TCCCAGCTGCTCTGGCAAGCGCTCCAGGCTCCCATAGGCGCCCCCAC------AAAGTCAGGTT------TGTTTCCTTTGGCACATGAGGCATGGAGAATTGTAGGAAAGGAGGCTCCACCAAGCAGAGCAGATGGAGGGAGGAGGGCAGCTTCCTGCTTCCCGGGCGATGGGACCCTACA i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3440127 182 + 196418989 AGAAACACCGAGC--TCCCAGCTGCTCTGGCAAGCGCTCCAGGCTCCCATAGG-ATCCCCAC------AAAGTCAGATT------TGTTTCCTGTGGCACCTGAGGCATGGAAAGTTGTAGAAAAGGAGCCTCCACCAAGCAGAGCAGACGGAGGGAGGAGGGCAACTTCCTGCTTCCCAGGTGACAGGACGCCACA i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_294765 799 153 - 1803 aaaaTCATTGAGCTGTCTCTCCCTCTCCATTCAGTGCTTCAGGTTCCTACATGAGCCACCAC------AAAATCTCGTG------CATTTCCTGAGGCAAAAGAGGGATGGAAAATTG-AGAAAAAGAACTTTTCACACCCAGGGAAGACAGAGGGAGGAGGGTGG------------------------------- i tarSyr1.scaffold_294765 I 326 I 49 s felCat3.scaffold_165875 351725 126 - 430351 AAAAAGAT---GC--CCCTACGTGTCCCGGCAGCCGCCCCGGGCCC----------CATCGC------AAAGCCAGGTG------AGTTTCCAGCGGCAGAT------------------------------------------GCGGACAGAGGGAGGAGGGCAGCTACCTGCCCCGCGGGTGA--GGACCCCCCA i felCat3.scaffold_165875 C 0 N 0 s proCap1.scaffold_62353 5654 163 - 15406 CAAATAATAGAGC--TCCCACCTGTCCTGGCAAACCCTCCAAGTTTGTACATGAAACACCAC------AAAGCCAGAT---------------GCATCAGGTAAGGGATGGAGAACTGTAGAAGGAGAATTTCT-CCACACAGTGCAGGCAGAATGAAGGGGGCTGTCTCTGTCTG-CTAGGTGATGG--------- i proCap1.scaffold_62353 C 0 N 0 s dasNov2.scaffold_94649 1021 174 - 8741 CAAACGTCCGAGC---CCCAGCTGTCCTAGCAAACCCTCCGGGCTTCTGCGC-CCACACCAC------GAAGCCAGGTG------AGCTT-CGGAAACCGGTGAGGCGTGGAGAACTGCAGAGAAAGAGCCGCC-CCGCCCA-CGCAGACAGAGC----GGGCCTGCCACCTGCTGCCCGGGCGATGGCACCCCACC i dasNov2.scaffold_94649 C 0 I 1 s danRer6.chr18 39536984 170 - 49271716 AAAAAGACCAAAC--------TTGTTCACAGCAGAGGACATTGCACTTAGAGGATTCCCCCCGCTCAGAAAGTTGGAGGAAAACATGTTGGCTGTGGGGAATAGGGCACTGG----TGTAGGAGAAGACT-------------GGGATGGGGAGCCCAGAGGTGGGTTTCT--CTCACCAGTTGAAGTTATCCCTCA i danRer6.chr18 C 0 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=18310.000000 s hg19.chr21_gl000210_random 14832 36 + 27682 ATCGTCTGACCCACTGCCATAGCTTCCTGGACATTA s panTro2.chr21 3571452 36 - 46489110 ATCGTCTGACCCACTGCCATAGCTTCCTGGACATTA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1795148 36 - 4212913 ATCGTCTGACCCACTGCCATAGCTTCCTGGACATTA i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3440309 36 + 196418989 GTCGTCTGACCCAGTGCCATAGCTTCCTGGACGTTA i rheMac2.chr3 C 0 C 0 s dasNov2.scaffold_94649 1196 32 - 8741 CCCACTTTGTCCTTTGTC----CCTCTCAGGTGTTT i dasNov2.scaffold_94649 I 1 C 0 s danRer6.chr18 39537154 29 - 49271716 -------CATCTACCTCCAGTGTCCCTTAGAAAATA i danRer6.chr18 C 0 N 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e tarSyr1.scaffold_294765 952 49 - 1803 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=19587.000000 s hg19.chr21_gl000210_random 14868 50 + 27682 CTGAAGGGCTCAGCTCAGGGTGGA-------GGGATGAGCACCTCTGCTGTGCCTAC s panTro2.chr21 3571488 50 - 46489110 CTGAAGGGCTCAGCTCGGGGTGGA-------GGGATGAGCACCTCTGCTGTGCCTAC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1795184 46 - 4212913 CTGA--GGCTCAGCTC-GGGTGGG-------GAGATGAGCA-CTCTGCTGTGCCTAC i ponAbe2.chr21_random C 0 I 1158 s rheMac2.chr3 3440345 48 + 196418989 CTGAAGGGCTCCGCTCGGGATGG--------GGGATGAGCA-CACTGCTGTGCCTAC i rheMac2.chr3 C 0 C 0 s dasNov2.scaffold_94649 1228 56 - 8741 CTGGAAGGGCAGGCCTAGGACAGGGGACAGTGGCACGAGGA-CTGCTTTCTGCCCGC i dasNov2.scaffold_94649 C 0 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e tarSyr1.scaffold_294765 952 49 - 1803 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I a score=86093.000000 s hg19.chr21_gl000210_random 14918 354 + 27682 -CTCGAGTGTGGAACTGGCAGGACTGTGTGGAAGGGCTGCCTTTCTTGCCTTGCCCATCTCCTGGTGCCTGGATGTCCCGGGCACATCCCGATGTCCAGAGCTTCCCCCACCCACTTTGCTCCCAGAGCTCCAGCATCACCCCTCCCTTTGCTGGTGCCTGAAACCATCACTGCTGCAGGGCCTGGGTGAGGAATCAGGCTGCTCACAGAGCGCCTGGCCT-------GGCTGCTTCCT----ACTTTTCCTGCACATGTGCCTGACAGCCCAGGCAGGGAGTGGGGAGGTGGGGGGAGAGGGGACCCCCTTGGAAGCGTAC-CTCACCTTCT-CATCATGCCGCTTCCCCACCTAGGAGGGAGAGTC s rheMac2.chr3 3440393 341 + 196418989 -CTCAAGTGTGGAACCGGCAGGACTGTGTGGAAGAGCTGCCTTTCCTGCCTTGCCCATCTCCTGGTGCCTGGATGTCCCTGGCACATCCCGCTGTCCAGAGCTTCCCCCGCCCACTTTGCTCCAGGAGCTCCAGCATCGCCCCTCCCTTTGCTGGTGCCTGAAACCATCACTGCTGCAGGTCCCAGGTGAGGAATCGGCCTGCTCACAGCGTGCCCGGCCT-------GGCTGCTTCCT----ACTCTTCCGGCACATGCACCTGACAGCCCAGGCAGGGAGTGGGGAGGTGGGGGGGCAGGGTACCCCGTTAGAAGTGTAC-GTCA--------------CTGCTTCCCCACCTAGGAGGGAGAGCC i rheMac2.chr3 C 0 C 0 s panTro2.chr21 3571538 354 - 46489110 -CTCGAGTGTGGAACTGGCAGGACTGTGTGGAAGGGCTGCGTTTCTTGCCTTGCCCATCTCCTGGTGCCTGGATGTCCCGGGCACATCCCACTGTCCAGAGCTTCCCCCGCCCACTTTGCTCCCAGAGCTCCAGCATCACCCCTCCCTTTGCTGGTGCCTGAAACCATCACTGCTGCAGGGCCTGGGTGAGGAATCAGGCTGCTCACAGAGCGCCTGGCCT-------GGCTGCTTCCT----ACTTTTCCTGCACATGTGCCTGACAGCCCAGGCAGGGAGTGGGGAGGTGGGGGGAGAGGACACCCCCTTGGAAGCGTAC-CTCACCTTCT-CATCATGCCGCTTCCCCACCTAGGAGGGAGAGTC i panTro2.chr21 C 0 C 0 s dasNov2.scaffold_94649 1284 288 - 8741 CCAC-----TGGGACAGGCAGCTTTG---------GC--CCTTCTTTTCCCTCCCCGGCACCTGGTGGCT-------------CCTCTCCAGGGTGCAAAG-------CGCCCACTTTGGTCCC------TCACGGGCCCCCCTCCCTT------------------------CTACGGG-----GGTGAGGAGATGGACGGC------GGTGCCCTCTCTTTCCTGGGGATTCTTTCCAGGGATCTCACTGGGACTGGCACCTGTCC-CCCAGGAGAGCTCTTGGGGAGAGGAGCGAGAGGGTCTCTGTCCCTAGGTGTCCGCTCAGCTCTTGCACCA--CCACTCCGAGACCCTGGGAGGGGACAC i dasNov2.scaffold_94649 C 0 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e tarSyr1.scaffold_294765 952 49 - 1803 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I e ponAbe2.chr21_random 1795230 1158 - 4212913 I a score=211341.000000 s hg19.chr21_gl000210_random 15272 578 + 27682 --TCAGAAAGACCCTTGCTTTGT-AAGGAAGAAGCTGGC--------------------CAGTGTCCCGTT------GCCCC----CACAAGGC--CGCCCATCTAACCCTCTTCTCACACAGGATGGAGGGAGGGCAGTCCCAAAGGCTCACTGGGCCCTGGGCCCTGCAGTGGATGGATCTGTGGGACTGGAGCCCTGAGGAACCAGGAGCTGAGAGTGTCCCAGCATCAGCAGCCCAGGCTCTTCAGGAAACTCCGCAAGCAGCGGCTCACCCCAGCCAGCTGCTAAACTCCAGCCACATGCAGAGACTCTGAGTGGACTT-TTACCCCCAGCCCTGCCTGG-GCAGTCCCCCAGACC--AGAGTCCAACTTA----------------------------------------------CACAGGCCACACTGGCCGGGCCACGGTTCGCTGTGCTCTCTGGCACAGACCACG---GCCCTTGGGGTCTGTGGTGCATTGAGCTGTCACGGGCTTGCAATTCCCCAAACTGGAGAAAACCCTGGAAAGACCAGAGGCACAAAAAGGAAACCCACTCCCCTAGTCTTTCATTTCCTTCTCCTTGCATTTCCAACCTGGGGAGGGGAGGGGAGCCCGGGAGGGTGTGCAAAGGGGAAGGACGGGG s panTro2.chr21 3571892 573 - 46489110 --TCAGAAAGACCCTTGCTTTGTCAAGGAAGAAGCTGGC--------------------CAGTGTCCCGTT------GCCCC----CACAAGGC--CGCCCATCTAACCCTCTTCTCACACAGGATGGAGGGAGGGCAGTCCCAAAGGCTCACTGGGCCCTGGGCCCTGCAGTGGATGGATCTGTGGGACTGGAGCCCTGAGGAACCAGGAGCTGACAGTGTCCCAGCATCAGCAGCCCAGGCTCTTCAGGAAACTCCACAAGCAGCGGCTCACCCCAGCCAGCTGCTAAACTCCAGCCACATGCAGAGACTCTGAGTGGACTT-TTGCCCCCAGGCCTGCCTGG-GCAGTCCCCCAGACC--AGAGTCCAACTTA----------------------------------------------CACAGGCCACACTGGCCAGGCCACGGTTCGCTGTGCTCTCTGGCACAGACCACG---GCCCTTGGGGTCTGTGGTGCATTGAGCTGTAACGGGCTTGCAATTCCCCAGACTGGAGAAAACCCTGGAAAGACCAGAGGCACAAAAAGGAAACCCACTCCCCTAGTCTTTCATTTCCTTCTCCTTGCA------ACCTGGGGAGGGGAGGGGAGCCCGGGAGGGTGTGCAAAGGGGAAGGACAGGG i panTro2.chr21 C 0 C 0 s rheMac2.chr3 3440734 625 + 196418989 --TCAAAAAGACCCTTGCTTTGTCAAGGAAGAAGCTAGC--------------------CAGTGTCCTGTT------GCCCC----CACAAGGC--TGCCCGTCTAACCCTCTTCTCATGCAGGATGGAGGGAGGGCAGTCCCAAAGGCTCACTAGGCCCTGGGCCCTGCAGTGGATGGATCTGTGGGACTGGAGCCCTGAGGAACCAGGAGCTGAGACTGTCCCAGCTTCGGCATCCCGGGCTCTTCAGGAAACTCCGCAAGCAGCGGCTCACCCCAGCCGGCTGCCAAACTCCAGCTACACGCAGACTCTCAGAGTGGACTT-TGGCCCCCAGCCCTGCCCGG-GCAGTCCCccagacc--agagtccaactcacacaggccacactggccaggccatggccagaccagagtccaactcgcacaggccacactggccaggccatggTTCACTGTGCTCTCTGGCACAGACCACA---GCCCATGGGGTCTGTGGTGCATGGAGCTGTCATGGGCTTGCAATTCCACAGACTGGAAGAAACCCCGGAGAGACCAGAGGCACAAAAAGGAAACCCATTCCCCTCGTCTTTCATTTCCTTCTCCTTGCATTTCCAACCTGGGAAGGGGAGGGGAGCCCAGGAGGATGTGCAAAGGGGAAGGACAGGG i rheMac2.chr3 C 0 C 0 s tarSyr1.scaffold_294765 1001 563 - 1803 --TCAAAAAGACCCTCACTTTTTCAGGGAAGAAGCTGGC--------------------TAGGGTCCCACT------GCTCCCTCTCTCAAGTC-TTGCCCACCTAACC--TCTCTCTTGCAGGGTGGTGTGAGGGCAGCCCCTGA-GCTCAGATGGTCCTGGTCCCTGCAGTGGGTAGCTCTATCTGCCTGGAGCCCTGCAGAACAAGGGGCTGAAACCGCCCCAGCACCAGCAACCAAGGCTCCCCACAAAACCCCCAAAACAGCATCTCACCCCAGCCAGCTGCCAGACTCCAGTGACACTGCAATTTTCAGAGTGGACTTGTGGCCCCCAGCCCTGCCTTACACAGTCCCACAGACCAGAGAGGCCAACT------------------------------------------------CCCAG---ACACCCAGCAGGCCAC-GTTAACCGGATTCTCTGGTGCCGAGCACA---GCCCTCGTGGTCTGTGGCTTGTGGAGCCATTGCTGACC--CAAATCCCCCAACTGGAAGAAACACTTGAGAGACCTGAGTCAGGAAGAGGAAACCACCTCCCTGGGAAGT--------------GTGGGTTTCCAACTGGGAGGCGGAGAGGGGGGACAGAAAGATGCAAGGGAGAGATGGGTGGGG i tarSyr1.scaffold_294765 I 49 C 0 s dasNov2.scaffold_94649 1572 515 - 8741 ATGGAAAGTGATCCTTG----GTAGAGGGAGTAACTGGCTGTGTCTCTCCCCCTCCTGTCAGGTTCCTGTCCAGAAAGTGCC----CTCAAGCCCTTTCCTGCCTGGTC---TTCCCTTGCAG---GGGGCGAGCGCAGCCCCCGA-GCT------------------------------------GGACCAGCGC----AGGGGCCAGGG--CGAGAAAACTCCACCATCGGC-CTCAAGCCTCTCCAGGGAGCCTTAA-----------------AGCCACTTTCTGCTCGCTGGCCAC---CAGATGCTCTGAAGTCCCTC----ATCCCAGCCCTGCCCAGGGCCAGCCCACAG-CT--GGAGG------------------------------------------------------TCCCGGCCCCGGGGGCCAGGCA---GGCCTCTGGAGCCTGTCACTTGGGCCCCATGTGCCTCCCTGGCCTCTACCTTCTGGATCTGC----AGCTCCAAATTCCCAGCACCCTAAGACACCC-AGAGAGACCAGAAGCTCACAAAGGAAAACCTCTTGCCTTCCCCTTTCATTTTTTTCCTTTGCATTTTCAACTTGGGGGCCAGATGG--GTACAAGAGGATG--AAAGAGAAAAGGGCAGGG i dasNov2.scaffold_94649 C 0 N 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I e ponAbe2.chr21_random 1795230 1158 - 4212913 I a score=14461.000000 s hg19.chr21_gl000210_random 15850 79 + 27682 CGAGACCCGGCTTTCCAGCATCTACTACGAAATGCCACATGCAGAGCAGGTCAGCAGGTCCCAACCCCTTCCACCCTGT s panTro2.chr21 3572465 79 - 46489110 CGAGACCCGGCTTTCCAGCATCTACCGCAAAACGCCGCATGCAGGGCAGGTCAGCAGGTCCCATCCCCTTCCACCTGGC i panTro2.chr21 C 0 T 68 s rheMac2.chr3 3441359 57 + 196418989 CTAGACCCGGCTTTCCAGCATCTACCATGAAACACCACGTG-AGGGCAGGTCAGCAGG--------------------- i rheMac2.chr3 C 0 I 20 s tarSyr1.scaffold_294765 1564 70 - 1803 ATGGGTTCTGCCTTCGAGCGGCTACAGTCAAACAACATGTGTAGA-TAGTTCACCAGGACCTTACTCTTTC-------- i tarSyr1.scaffold_294765 C 0 N 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I e ponAbe2.chr21_random 1795230 1158 - 4212913 I a score=9740.000000 s hg19.chr21_gl000210_random 15929 115 + 27682 TTTCCAGCATCTACCACAAAACGCCGCATGCAGGGCAGGTCAGCAGGTCCAATCCCCTTTGACCTGGCTTTCCAGTATCTACCACAAAACACCGTGCACAGAGCAAAGTCCGATT s panTro2.chr21 3572476 115 - 46489110 TTTCCAGCATCTACCGCAAAACGCCGCATGCAGGGCAGGTCAGCAGGTCCCATCCCCTTCCACCTGGCTTTCCAGCATCTACCACAAAACACCGTGCACAGAGCAAGGTCCCATC i panTro2.chr21 T 68 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I e ponAbe2.chr21_random 1795230 1158 - 4212913 I e rheMac2.chr3 3441416 20 + 196418989 I a score=29915.000000 s hg19.chr21_gl000210_random 16044 150 + 27682 CCCTTCCACCTGGCTTTCCAGCATCTACCACAAAACGCCGCATGCAGGGCAGGTCAGCAGGTCCCATCCCCTTCCACCCGGCTTTCCAGTATCTGCCACAAAACACCACATGCAGGGCAGGTGAGCAGGTCCCATTCCCTTCCACCCGGC s panTro2.chr21 3572591 136 - 46489110 CCCTTCCACCTGGCTTTCCAGTATCTACCACAAAACACCGTGCACAGAGCA-------AGGTCCCATCCCCTTCCACCTGGCTTTCCAGTATCTACCACAAAACACCGTGCACAGAGCA-------AGGTCCCATCCCCTTCCACCTGGC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1796388 149 - 4212913 CCCTTCCACCCGGCTTTCCAGCATCTACCATGAAACACCGTGCACAGAGCAGGTCAGCAGGTCCCATCCCCTTTGACCCAGCTTTCCAGTATCTACCACAAAACTCCACGTGCAGGGCAGGTCAGCAGGTCCCG-ACCCTTCCACCCGGC i ponAbe2.chr21_random I 1158 C 0 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e gorGor1.Supercontig_0049662 42010 1790 + 54198 I e rheMac2.chr3 3441416 20 + 196418989 I a score=23061.000000 s hg19.chr21_gl000210_random 16194 54 + 27682 TTTCCAGCATCTATCGCAAAACGCCGCATGCAGGGCAGGTCAGCAGGTCCCATT s ponAbe2.chr21_random 1796537 52 - 4212913 TTTCCAGCATCTACCATGAAACG-TGTGTGCAGGGCAGGTCAGCAGGTCCCAT- i ponAbe2.chr21_random C 0 I 17 s gorGor1.Supercontig_0049662 43800 53 + 54198 TTTCCAGCATCTACCACAAAANGCCGCATGCAGGGCTGGTCAGCAGGTCCCAT- i gorGor1.Supercontig_0049662 I 1790 N 0 s panTro2.chr21 3572727 54 - 46489110 TTTCCAGCATCTGCCACAAAACGCCGCATGCAGGGCAGGTCAGCAGGTCCCATT i panTro2.chr21 C 0 I 17 e gasAcu1.chrXVII 10263476 696 + 14603141 I e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I e rheMac2.chr3 3441416 20 + 196418989 I a score=34750.000000 s hg19.chr21_gl000210_random 16248 68 + 27682 -----CCACCAGGGCT-----TTCTTCTCATCTAAGGAGAGAGGAGGCGTCTGCTG--GCGTTGGGTTTTCCCCTGGGCA s panTro2.chr21 3572798 68 - 46489110 -----CCACCAGGGCT-----TTCTTCTCATCTAAGGAGAGAGGAGGCGTCTGCTG--GTGTTGGGTTTTTCCCCGGGCA i panTro2.chr21 I 17 C 0 s ponAbe2.chr21_random 1796606 68 - 4212913 -----CCACCAGGGCT-----TTCTTCTCATCTAAGGAGAGGGGAGGCGTCTGCCG--GCGTTGGGTTTTACTCCGGGTG i ponAbe2.chr21_random I 17 C 0 s rheMac2.chr3 3441436 70 + 196418989 -----CCACCACGGCT-----TTCTTCTCATCTAGGGAGAGGGGAGGCGTCTGCAGGTGTGTTGGGTTTTCTTCCGGGAG i rheMac2.chr3 I 20 C 0 s gasAcu1.chrXVII 10264172 69 + 14603141 CCTCTCGGTTAGTGCTGCTCCTTCTCCTCATTTCAGGAGAGTGGCGGC----GCCA-------GGGTTCGTCCCGGAGCA i gasAcu1.chrXVII I 696 N 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I a score=114814.000000 s hg19.chr21_gl000210_random 16316 214 + 27682 AAAGACAGCTGTAAACAAAACAGCGCTAGGCAAGCATGCCGAGGTGAGAGGGGCCAGAAACCAGGGAGGAAGCTCTCCAGATAACAGAGCTGAGCCTGACTGTGGCATCTCCAGGGTCTGTTCCTGCCACACAGGCACTCCAGGCCCACATGGGAGAATGACAGCTCCTCCAGAGCCGGCCCTCAGGAAGTTCTCCAATACCCTGAGCTACTGT s panTro2.chr21 3572866 214 - 46489110 AAAGACAGCTGTAAACAAAACAGCGCTAGGCAAGCATGCCGAGGTGAGAGGGGCCAGAAACCAGGGAGGAAGCTCTCCAGATAACAGAGCTGAGCCTGACTGTGGCATCTCCAGGGTCTGTTCCTGCCACACAGGCACTCCAGGCCCACATGGGAGAATGACAGCTCCTCCAGAGCCAGCCCTCAGGAAGTTCTCCAATACCCTGAGCTACTGT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1796674 214 - 4212913 AAAGACAGCTGTAAACAAAACAGCGCTAGGCAAGCATGCCGAGGTGAGAGGGGCCAGAAACCAGGGAGGAAGCTCTCCAGATAACAGAGCTGAGCCTCACTGTGGCATCTCCAGGGTCTGTTCCTGCCACACAGGCACTCCAGGCCCATGTGGGAGAATGACAGCTCCTCCAGAGCTGGCCCTCAGGAAGTTCTCCAATACCCTGAGCTACTGT i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3441506 214 + 196418989 AAAGACAGCTGTAAACAAAACAGCACTAGGCAAGCATGCCAAGGTGAGAGGGGCCAGAAACCAGGGAGGAAGCTCTCCAGACAACAGAGCTGCGCCTGATCGTGGCATCTCCAGGACCTGTTCCTGCCACACAGGCACTCCTGGCCCACGTGGGAAAATGACAGTTTCTCCAGAGCCGGCCTTCAGGAAGTTCTCCAATACCCTGAGCTGCTGC i rheMac2.chr3 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I a score=257084.000000 s hg19.chr21_gl000210_random 16530 462 + 27682 GAACCCTCGGAGCACC------GTTGGTGAAGGGTGCTTTTCGAGGCTGTCAGGGTGAGCGTGAGCCCCCAG-----------GCCCTGGTGGCATTTGTCATGGGTGGCATTGGTCTCTGTCCCTACAGCCTGCCTCCTGGGGCCACCACC-ACCTTCCTGGCTG-CCCCCTCCAGCCTGGCTACTTAGGGGCTACTGGTACCCAGG---AGATCAGGGAAGCCTGGGTTGCCAGCGGCCGGGGTGGGGGCTGTGGCACCTGCCGGCCgctatgatctgaatgttggtgcccccagaaactcatctgttgaaatcctcaccgcatcatgatggcattgggaggccatggggccttgaggaggtggggagatcctcagggtggagccgtgttcgtgggattcacgccctgataaaggccacac---agagctccctcagtccttccaca-cgcagggacacagacgaaggatgttgtctgtaacccag s rheMac2.chr3 3441720 459 + 196418989 GAACCCTTGGAGCACC------GACGGCGGAGGGTGCTTTTCGAGGCTGTCAGGGTAAGCGTGAGCCCCCAG-----------GCCCTGGTGGCATTTGGCATGGGTAGCATTGGTCTCTGTCCTTAAAGCCAGCCTCCTGGGGCCACCATC-ACCTTCCTGGCTGTCCCCCTCCAGTC-AGCTACTTAGGGGCTACTGGTACCCAGG---AGATCAGGGAAGCCTGAGCTGCCAGTGGCCAGGGTGGGGGATGTGGCACCTGCCGGGtgctatggtctgaacgttggtgctcccagaaactcatctgttaaaatcctcaccgcatcatgatggcattgggaggc---agggcctttgggaggtggggagatcctcaaggtggagccgtgttggtgggatttgcaccctgataaaagccccac---agagctccctcagtctttccaca-catggggacacagctgaaagatgttgtctgtaccccag i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1796888 458 - 4212913 GAACCCTCGGAGCACC------GTTGGTAGAGGTTGCTTTTCGAGGCTGTCAGGGTGAGCGTGAGCCCCCAG-----------GCCCTGGTGGCATTTGTCGTGGGTGGCATTGGTCTCTGTCCCTAAAGCCAGCCTCCTGGGGCCACCACC-ACCTTC----CCG-CTCCCTCCAGCCTGGCTACTTAGGGGCTACTGGTACCCAGG---AGATCAGGGAAGCCTGGGCTGCCAGTGGCCGGGGTGGGGGCTGTGGCACCTGCCGGGCgctatggtctgaatgttggtgcccccagaaactcatctgttgaaatcctcaccacatcacgatggcattgggaggccacggggccttgaggaggtggggagatcctcagggtggagctgcgttcgtgggattcgcgccctgataaaggccccac---agagctccctcagtccttccaca-cgcggggacacagacgaaggatgttgtctgtaacccag i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3573080 462 - 46489110 GAACCCTCGGAGCACC------ATCGGTGAAGGGTGCTTTTCGAGGCTGTCAGGGTGAGCGTGAGCCCCCAG-----------GCCCTGGTGGCATTTGTCATGGGTGGCATTGGTCTCTGTCCCTACAGCCTGCCTCCTGGGGCCACCACC-ACCTTCCTGGCTG-CCCCCTCCAGCCTGGCTACTTAGGGGCTACTGGTACCCAGG---AGATCAGGGAAGCCTGGGCTGCCAGCGGCCGGGTTGGGGGCTGTGGCACCTGCCGGGCgctatggtctgaacgttggtgcccccagaaactcatctgttgaaatcctcaccgcatcatgatggcattgggaggccacggggccttgaggaggtggggagatcctcagggtggggccgtgttcgtgggattcgcgccctgataaaggccccac---agagctccctcagtccttccaca-cgcagggacacagatgaaggatgttgtctgtaacccag i panTro2.chr21 C 0 C 0 s speTri1.scaffold_76206 6573 441 - 7018 GGAACCTAAGAGTGCCTTTGCAGATGGTGAAGGA-----GTCGGGGCTGTCAGAGTGGGTGGGGGAGGCCAGGGATGGTCAGAGCCGTGGCGTC-CTGGCCATGGGTGCCACTTGCCTCTGTCCCTGAAGCCAGCCTCC-AGGAACACTACCTGTCCTCCTGCCGG-TCACCCTCAGCCTGACTGCATGGCCGCCCCAGGGCTCCAGGCTCAGCGTGGGGAGGACCGAGAGGCCCCTGGCTGGAACGGGA---------------AGGAGGCGTGGTCTGGGTGTGTGTTCCCC---AAGTGCACGTGTCGGTGACTAACCAAGGGGACGggggcctctgggggccatgaggac------aggagggtggagcactcaggtggg---------------ttagagccttgacagaagcccccccagaaagcccccgcccctggtccgcctcaggaggccacagtgagaaggtgccatccgtgacccgg i speTri1.scaffold_76206 N 0 N 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I a score=89447.000000 s hg19.chr21_gl000210_random 16992 182 + 27682 ccgcaggcgctcacgggaatccgaccctgccggtgccctgagctcagccttgcagcctgcaaggctgtgaaaaataaatgtccatgcttagaagccaccagtctatggtacatcattacagcagcgggaacggactgagacaTGCGGTGATCTCGCTTCTGGGGACAGGGGTTTCTGT-CCCC s panTro2.chr21 3573542 182 - 46489110 tcgcaggcgctcacgggaatccgaccctgccggtgccctgagctcagccatgcagcctacaaggctgtgaaaaataaatgtccatgcttagaagccaccagtctatggtacatcattacagcagcgggaacggactgagacaTGCGGTGATCTCGCTTCTGGGGACAGCGGTTTCTGT-CCCC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1797346 182 - 4212913 ccgcaggccctcacgggaatctgaccctgcccatgccctgagctcagccttgcagcctacaaggctgtgaaaaataaatgtccatgcttagaagccgccagtctacggtacatcattacagcatccggaacggactgagacaTGTGGTGATCTCGCTTCTGGGGACAGCGGTCTCTGT-CCCC i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3442179 183 + 196418989 cctcaggccctcacgggaacccaaccctgccagtgccctgagctcagccttggagcctacaaggctgtgaaaaattaatatccatgcttagaagccaccagtctatggtacatcgttacagtagatagaacggactgagacGTGCGGTAATCTCACTTCTGGGGACAGTGGTCTCTGTCCCCC i rheMac2.chr3 C 0 C 0 e turTru1.scaffold_115263 1221 6134 - 23303 I e pteVam1.scaffold_24879 574 4786 - 9631 I a score=384701.000000 s hg19.chr21_gl000210_random 17174 666 + 27682 AGCTCTCAGCTCCATCATCGACCCTGACAGAGTCCACAGTGAACATCCAGGGAGCAGGGCCAGCTCCCGGGCCCCTGTTCCTGGGGTATGGCTGCTTGTGTCTCACAGCAACGTCCCCCACACCCTGCACCTTATAGAAAAGGGGGCGGGACTCATGAAGACTC--CTGGGTCTTGGCTCCTGGCCTCACCTGCTCAGAACCCAGCTCAGTTCCCCCATGGCCTCCATCC------------C-TACCCAGTCCCGAGTCATCATTGCCCACTTGGCACCCCCCAGCCCTCCCTGGC-----TCCCCGCAGGGTCCATCCCTTCCTGCCAGGTCCTTGCTGGGATTCTCTGTGCACGTGGGACTCCCCCATTTCCGGGGGGATCAACCCCAGTGCTGATGAAGGCAAACTC---AACAGCAGTCACAC--------------CTGGGAGTCCCACTGTCGGGGTCTGGGACCAAGAGGGAGCAGCAGGGCCAGGAGGCTTGCTGGGCCCTCTGGGATAATATGAC-AGATCACGCCCACACACGAGGATGGCCAGTG---GGGACGTTTGAGGTTCTCCCAGGCTTGATCACTCCCAGGCCAGGGCAAACC--CCACACCCCACCTTCCGCCCTGGGAGAAGTGGTGTCCCTGGCTACAGCCTCAGTGAGCACCCCCTGGTCTCTCTCCTGGCCCTGCCTCCCTCCAgg s rheMac2.chr3 3442362 667 + 196418989 AGCTCTCAGCCCCATCATCAACCCTGACAGGGTCCACAGTGAACATCCAGGGAGCAGGGCCAGCTCCCGGGCCCCTGTTCCTGGGGTGTGGCTGCTTGTGGCTCACAGCAATGCCCCCCACACCCTGCACCTTATAGAAAAGGGGGCGGGACTCACGAAGACTC--CTGGGTCTTGGCTCTCGGCCTCGCCTGCTCAGAACCCAGCTTGGTTCCTCCATGGCCTCCATCC------------CACACCCAGTCCCGAGCCATCATTGCCCACTTGGCA-CCCCCAGCCCTCCCTGGC-----TCCCCCCAGGGTCCATCCCTTCCTGCCAGGTCTTGGCTGGCATTCTCTCTGCACGTGGGACTCCCCCATTTCTGGGGGGATCAACCCCAGTGCTGATGAAGGCAAACCC--AAACAGCAGTCACAC--------------CTGGGAGTCCCAGCGTCGAGGTCTGGGACCGAGAGGGAGCAGCAGGGCCAGGCAGCTTGCTGGGCCCTCGGGGATAATACGAC-AGATCCTGCCCGCACACAAGGATGGCCAGCG---GGGACGTTTGAGGCTCTCCCAGGCTCAATCACTCTCAGGCCAGGGCAAACC--CCGCACCCCAGCCTCCACCCTGGGAGAAGTGGGGTCCCTGGCTACAGCCTCAATGGGCACCCCCTGGTCTCCCTCCTGGCCCTGACTCCCTCCAgg i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1797528 659 - 4212913 AGCTCTCAGCCCCATCATCAACCCTGACAGAGTTCACAGTGAACATCCAGGGAGCAGGGCCAGCTCCCAGGCCCCTGTTCCTGGGGTATGGCTGCTTGTGGCTCACAGCAACGCCCCCCA-------CACCTTATAGAAAAGGGGGCGGGACTCATGAAGACTC--CTGGGTCTTGGCTTCCAGCCTTGCCTGCTCAGAACCCAGCTGGGTTACCTCATGGCCGCCATCC------------CGCACCCAGTCCCGAGTCATCATTGTCCACTTGGCA-CCCCCAGCCCTCCCTGGC-----TCCCCCCAGTGTCCATCCCTTCCTGCCAGGTCCTGGCTGGGATTCTCTCTGCACGTGGGACTCCCCCATTTCCGGGGGGATCAACCCCAGTGCTGATGAAGGCAAACCC---AACAGCAGTCACAC--------------CTGGGAGTCCCAGTGTCAGGGTCTGGGACCAAGAGGGAGCAGCAGGGCCAGGCGGCTTGCTGGGCCCTCTGGGATAATATGAC-AGATCCCGCCCACACACGAGGATGGCCAGTG---GGGACGTTTGAGGTTCTCCCAGGCTTGATCACTCCCAGGCCAGGGCACACC--CCACACCCCAGCTTCCACCCTGGGAGAAGTGGTGTCCCTGGCTACAGCCTCAATGAACACTCCCGGGTCTCCGTCCTGGCCCTGCCTCCCTCCGgg i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3573724 667 - 46489110 AGCTCTCAGCCCCATCATCGACCCTGACAGAGTCCACAGTGAACATCCAGGGAGCAGGGCCAGCTCCCGGGCCCCTGTTCCTGGGGTATGGCTGCTTGTGGCTCACAGCAACGTCCCCCACACCCTGCACCTTATAAAAAAGGGGGCGGGACTCATGAAGACCC--CTGGGTCTTGGCTCCCGGCCTCGCCTGCTCAGAACCCAGCTCAGTTCCCCCATGGCCTCCATCC------------CACACCCAGTCCCGAGTCATCATTGCCCACTTGGCACCCCCCAGCCCTCCCTGGC-----TCCCCGCAGGGTCCGTCCCTTCCTGCCAGGTCCTGGCTGGGATTCTCTGTGCACGTGGGACTCCCCCATTTCCGGGGGGATCAACCCCAGTGCTGATGAAGGCAAACCC---AACAGCAGTCACAC--------------CTGGGAGTCCCAATGTCGGGGTCTGGGACCAAGAGGGAGCAGCAGGGCCAGGAGGCTTGCTGGGCCCTCTGGGATAATATGAC-AGATCCCGCCCACACACGAGGATGGCCAGTG---GGGACGTTTGAGGTTCTCCCAGGCTTGATCACTCCCAAGCCAGGGCAAACC--CCACACCCCAGCTTCCACCCTGGGAGAAGTGGTGTCCCTGGCTACAGCCTCAGTGAGCACCCCCTGGTCTCCCTCCTGGCCCTGCCTCCCTCCGgg i panTro2.chr21 C 0 C 0 s turTru1.scaffold_115263 7355 630 - 23303 AGCTCTCGCTCATGACCTTGACCCAGACAGA-TCCGCAGGGAGCCTGTGGGGAGCAGAG-TGGCTCTCCGA-TTCTATTCCTGAGGTCTGGCTGCGTGTGACTCACGTCAACA-----------CTGTACCTCTCAGAAAATGGGACATGACTCATCACGACTCAGCCGGCCCTCGGCTGTCAGCTCCACCTGCTGGGTTC----------TCCCCGAGGGTCCCCACCCAGGCCCTGGGTGCGTGTCCCCCTCTGACCCAGCGTCTTCTCCTCGG---CCCCCAAC---TCCTGGCCCACATCTCTGCGGGGCTCAT-CCTTCCCACCAGGCCCTGGCCCGGTATCTCT---------------CCCAGTTCCCAAGGGGAT-GACCTCCTTGTGGATGAAGGTGAAACAGGGAACCAGAGCCCCACTGCTGGCCCAGTAGCCAGGAGTCTCGG-GACATGGGCTGGAATCCAGGAGAAG--GCGGGGCT--------------GCCCAGGCACATGACATGGCAAGACCACACCTGCA-AGGTGGGCAGTCAGCGGCAGGGCCCTGCGAGGGCCGCCTGCTTTCCATCACTTCCAGAGAAGGGCAGACCGGCCCCCCCTCACTGCTAGCCTCCAAAG-------GCCCTTGGTCTCAGCCTCCCAGAA---TCTCTG----CCTCCCAGGCCCCGCCTCCCTCCAGG i turTru1.scaffold_115263 I 6134 N 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=756883.000000 s hg19.chr21_gl000210_random 17840 994 + 27682 ctcactgcaacctccacctcccaggttcaagtgattctcctgcctcaggctcctgagtagctgggactacaggtgtgcatcaccacgcccagctactttttgtatttttaataaagacagggtttcatcatgttggccaggctggtctcgaactcctaacctcaggtgacctgcccgtgttggcctccctaagtgctgggattccaggcatgaaccacggcacccggccAAGAATTTGTTTCTTTATAAAAAATCATGGCTAGAAGGTTTGGCTTTTTTTCTTACTGTAAAAGCAATGAATGTTCATATAATATTG------------GACTTGTAATAAAAtgtatcccaagtctgcagggaatccccatgtgggtgtcaatgggcacctcgacttagtggccggctcttaattcatgggtccaccccctgcacctcttcccccttggttgtctcaacttcagtcaggaggactggagcccacccggccactcaggccacaagcccgggatctccacggagttgggggtcccctcccacccgcatccaacccatcagctagctctgttgactgtgccttcaaaacacatcccacattgggcctttcctcaccacTCGAGGCGTGTCCCTGTGCAAGGCCCTCGATTTCTCCATCAGCATTTGCAGCCAGCTGGGGGCCCGACCTGGGCAGATCCAGCCAGAAACTGGGAAGTGGCCACAATGGCGGCGGCCACCTTGGTGGACGTGGGGAGAATTGGAATGGCAGGAG--ATGAGTGAGATGCGGAGACAGATGTGCCTCTGCGCTTGTGCCAGGCTCCAAATTTGGAAGCATCGCTGATGGCCAAATTCCAACGAACCTGGAGTCCTGCTGTTGACTTTCTGATCCAA-CCGGTGAGTGCAGGGTGG-------------CCCGGCCCTCCCTGTGAAACCAGACTTGTCTGGGGTGGTGTCTGACTTTTCTCAGTGAGCTCCGAGGCCCACCATTCTCATatcatctggagggtttgtc s panTro2.chr21 3574391 994 - 46489110 ctcactgcaacctccacctcccaggttcaagtgattctcctgcctcaggctcccgagtagctgggactacaggtgtgcatcaccacgcccagctactttttgtatttttagtagagacagggtttcatcatgttggccaggctggtctcgaactcctgaccccaggtgacctgcccgtgttggcctccctaagtgctgggattccaggcatgaaccacggcacctggccAAGAATTTGTTTCTTTATAAAAAGTCATGACTAGAAGGTTTGGCTTTTTTTCTTACTATAAAAGCAATGAATGTTTATATAATATTG------------GACTTGTAATAAAAtgtatcccaagtctgcagggaatccccatgtgggtgtcaatgggcacctcgacttagtggccggctcttaattcacgggtccaccccctgcacctcttcccccttggttgtctcaacttcagtcaggaggactggagcccacccggccactcaggccacaagcttgggatctccacggagttgggggtcccctcccacccgcatccaacccatcagctagctctgttgactgtgccttcaaaacacatcccacattgggcctttcctcaccgcTCGAGGCGTGTCCCTGTGCAAGGCCCTCGATTTCTCCATCAGCATTTGCAGCCAGCTGGGGGCCCGACCTGGGCAGATCCAGCCAGAAACTGGGAAGTGGCCACAATGGCGGCGGCCACCTTGGTGGACGTGGGGAGAATTGGAATGGCAGGAG--ATGAGTGAGATGTGGAGACAGATGTGTCTCTGCGCTTGTGCCAGGCTCCAAATTTGGAAGCATCACTGATGGCCAAATTCCAATGAACCTGGAGTCCTGCTGTTGACTTTCTGATCCAA-CCGGTGAGTGCAGGGTGG-------------CCCGGCCCTCCCTGTGAAACCAGACTTGTCTGGGGTGGTGTCTGACTTttctcagtgagctccgaggcccaccattctcagatcatctggagggtttgtc i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1798187 993 - 4212913 ctcactgcaaccttcacctcccgggttcaagtgattttcctgcctcaggctcccgagtagctgcaactac-ggtgtgcatcaccacgcccagctactctttgtattttaagtagagacagggtttcatcatgttcaccaggctggtctcgaactcctgaccccaggtgacctgcctatgttggcctccctaagtgctgggattccaggcatgaaccacggcacccggccAAGAATTTGTTTCTTTATAAAAAGTCATGGCTAGAAGGTTTGGCTTTTTTTCTTACTACAAAAGCAATGAATGTTTATATAATATTG------------GACTTGTAATAAAAtatatcccaagtctgcagggaatccccatttgggtgtcaatgggcacctcaacttagtggccagctcttaattcacgggtccaccccctgcacctcttcccccttggttgcctcaacttcagtcaggaggactggagcccacccggccactcaggccacaagcctgggatctccacggagttgggggtcccctcccacctgcatccaacccatcagctagctctgttgactgtgccttcaaaacacatcccacattgggcctttcctcactgcTCGAGGCGTGTCCCTGTGGAAGGCCCTCAACTTCCCCATCAGCATTTGCAGCCAGCTGGGGGCCCAACCTGGGCAGATCCAGCCAGAAACTGGGAAGTGGCCACAATGGCGG-GGCCACCTTGGCGGACGTGGGGAGAATTGGAATGGCAGGAG--ATGAGTGAGATGCGGAGATAGATGTGTCTCTGCACTTGCGCCAGGCTCCAAATTTGGAAGCATCGCTGATGGCCAAATTCCAACGAGCCTGGAGTCCTGCTGTCGACTTTCTGATCCAACCCGGTGAGTGCGGGGTGG-------------CCTGGCCCTCCCTGTGAAACCAGACTTGTCTGGGGTGGAGTTTGACTTTTCTCagtgagctccgaggcccaccattctcagatcatctggagggtttgtc i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3443029 991 + 196418989 ctcactacaacctccacctcccgcgttcaagggattctcctgcctcagcctcccaagtagctgagattacaggcgtgcatcaccacgcccagctaatttttgtatttttagtagagacagagtttcatcatgttggccaggctggtcttgaactcctgacctcaggtgacctgcccgttttggcctccctaagtgctgggattccagacatga-------------gccaGGAGTTTGTTTCTTTGTAAAAAGTCATGGTTAGAAGGTTTGGCTTTTTTTCTTACTATAAAAGCAATGAATGtttatataatattgtaatattatataaaCTTGTAATAAAAtgtatcccaagtctgcagggaatccccatttgggtgtcaatgggcacctccacttagtggccagctcttaattcacgggtccagcccctgcacctcttccccctccattgcctcaacttcagtcaggaggactggagcccactcggccactcaggccacaagcccaggatctccacggagttgggggtcccctcccacctacatccagcccatcagctggctctgttgac--tgccttcacaacacctcccacactgggcccctcctcaccgcttGAGGCGTGTCCCTGTGGAAGGCCCTCGATTTCCCCGTCAGCATTTGCAGCCAGCTGGGGGCCCAACCTGGGCAGATCCAGCCAGAAACTGGGAAGTGGCCGCAATGGCGGTGGCCACCTTGGCGGACATGGGGAGAATTGGAACGGCAGGAG--ATGAGTGAGGTGCAGAGATAGATGTGTCTCTGCGCTTGTGCCAGGCCCCAAATTTGGAAGCATTGCTGATGGCCAAATTCCAGCGAGCCTGGAGTCCTACTGTTGACTTTCTGATCCAA-CCGGTGAGTAGGGGGTGG-------------CCCGGCCCTCCCTGTGAAACCAGACCTGTCTGGGGTAGAGTCTGACGTttctcagtgtgctccgaggcccaccatcctcagatcatcgggagggtttgtc i rheMac2.chr3 C 0 I 314 s calJac1.Contig17381 12312 963 + 14043 ctcactgcaacctctatctcctgggttcaagcgattctcctgcctcagcctccagagtagctgggactacaggcgcctgtcaccatgcctggctaatttttgtatttttagtagagat-ggctttcatcaagttggccaggctggtttagaactcctgacctcaggtgatctatccacctcagtctcccaaactaccgggattacaggagtgagcccccgcacccagccAGGAGTTTATTTCTTTATAATAAGTGGCGGTTAAAAGGTTTGGCTCTTTTTCTTATTATAAAAGCAATGAATGTTTATATAATATTG------------GACTTATAATAAAATATCTCCCAAGTCTACAGGGACtccccgtttgggtgtcagtgggcatctcagcctagtggccgacccttaattcat-ggcccaccccctgcgcctcctctcccttggttgtctcaacttcagtcaggaggactggagcccacctggcca---------------------gtccatggacttggggatcccctcccacctgcatccaacccatcagctagttctgtcgactgtgcgatcaaaatacatagcacactgggcccctcctcatc-CTCGACGCGTGTCCGTGC---AGGCCCTCCACTTCGCCATCAGCGTTT-CAACCAGCTGGGGCCCCAACCTGGGCAGATCTACCTAGAAACTGGGAAGTGGCCACAACGGTGGCGGCCACCTTGTCGGACGTGGGGAGAATTGGAATGGCAGGAGCCATGAGTCAGGTGCAGAGACAGAAGTGTCTCTGCGCTGGTGCCA-ACCCCAAATTTGGAAGCATCGCTGGTGGCCAAATTCCATCAAGCCTGAAGTGCTGCTGTCGACTTTCCGGTCCAA-CTGGTGAGTG-GGGGTAGCCCGGCCTGGACTCCCGGCCCTCCCTGTGAAACCAGC----------------TCTGACTTTTCTCAGTGCGATCCAAGGCACACCATTCtcagatgatctggaaggtttgtc i calJac1.Contig17381 N 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=407319.000000 s hg19.chr21_gl000210_random 18834 506 + 27682 aaaatgcagattcgtggctccacttctgacctatag-atcaaagctgtggggatggggcccgggagcctgtatttcaaacagctcctaggtggtcctggtgGAGGTTAAGAACTTCTGGCCTGGGGATTGGGAGTGTGGACTCTGCAGCGGCTCATCTCAGGCTGGAGTCCCGGCT-------------------GGAGTTTGTAAGCTACACAACTGGCCGCCCTCCACATCCTCCTCCGCAGGACAGGCTCCTGCCGTGAGTGAGACGATGTCCAGCTCAGCTCGGCGCCTGGCACACTGGGGACTGCCCTCAGCTCTGCCACTCTTGTTATTGTGGTTATTGCTGTGGCCATTGTGACGCTCTGCCTTCCTTGTTGTTGAGCCTGCT-GCTGGTTGCACGTGACTTTGGACACCTATTTCCAGATGCCCGGCCCTGCACGCATTCATGGGGTTGCCGTGGAAACTGTGCTGTGAGGATGGCAGAAGCCGCAGGGTGAACAGAGTCTGAGTTTCCCAGGCACCGC s panTro2.chr21 3575385 506 - 46489110 aaaatgcagattcgtggctccacttctgacctatag-atcaaagctgtggggatggggcccgggagcctgtatttcaaacagctcctaggtggtcctggtggaggttaagaacttctgGCCTGGGGGTTGGGAGTGTGGACTCTGCAGCGGCTCATCTCAGGCTGGAGTCCCGGCT-------------------GGAGTTTGTAAGTTACACAACTGGCCGCCCTCCACATCCTCCTCCGCAGGACAGGCTCCTGCCGTGAGTGAGACGATGTCCAGCTCAGCTCGGCGCCTGGCACACTGGGGACTGCCCTCAGCTCTGCCACTCTTGTTATTGTGGTTATTGCTGTGGCCATTGTGACGCTCTGCCTTCCTTGTTGTTGAGCCTGCT-GCTGGTTGCACGTGACTTTGGACACCCATTTCCAGATGCCCGGCCCTGCACGCATTCATGGGGTTGCCGTGGAAACTGTGCTGTGAGGATGGCAGAAGCCGCAGGGTGAACAGAGTCTGAGTTTCCCAGGCACCGT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1799180 508 - 4212913 aaaatgcagattcgtggctccacttctgacctatagaatcaaagctgtggggatggggcccgggagcctgcatttcaaacagatcctaggtggtcctggtgGAGGTTAAGAACTTCTGGCCTGGGGGTTGGGAGTGTGGACTCTGCAGCGGCTCATCTCAGGCTGGAGTCCTAGCT-------------------GGAGTTTGTAAGTTACACAACTGGCCACCCTCCACATCCTCCTCCACAAGACAGGCTCCTGCCGTGAGTGAGACGATGTCCAGCTCAGCTCGGCGCCTGGCACACTGGGGACTGCCCTCAGCTCTGCCACTCTTGTCATTGTGGTTATTGCTGTTGCCATTGTGATACTCTGCCTTCCCTGTTGTTGAGCCTGCTGGCTGGTTGCACGTGACTTTGGACACCCATTTCCAGATGCCCGGCCCTGCACGCATTCATGGGGTTGCCATGGAAACTGCACTGTGAGGATGGCAGAAGCTGCAGGGTGAACAGAGTCTGAGTTTCACAGGCACCGC i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3444334 526 + 196418989 aaaatgcagattcgtggctccatttctgacctgcagaatcaaagctgtggggatgggtcccagaggcctgcatttcaaacagctcctaggtggtcctggtggaggttaagaacttctggccttggggttgggagtgcggactctgcagcggctcatctcgggctggagtcctgactccatgtccttctggccggggaactttgtaagttacacaacTGGCCGCCTCCCACGTCCTCCTCCGCAGGGCAGGCTCCTGCCGTGAGTGAGACAATGTCCAGCTCAGCTCGGCGCCCGGCACGCTGGGGACGGCACTCAGCTCTGCCACTCTTGTTATTGTGGTTACTGCTGTTGCCATTGTGACACTCTGCCTTCCCTGTTGTTGAGCCCGCTGGCCGCTTGCACGTGACTTTGGACACCCATTTCCAGATGCCCAGGCCTGCAGGCATTCGTGGGGTTGCCGTGGAAACTGCACTGTGAGGATGGCAG-AGCCACAGGGTGAACGGAGTCTGAGTTTCCCAGGCACCGC i rheMac2.chr3 I 314 C 0 s calJac1.Contig17381 13275 520 + 14043 aaaatgcaggtttgtggctccacttctgacctgtagaatccaagctgtggggatggggcctgggagcctgcatttcaaacagctcctaggtggtcctggtgGAGCTTAGGAACTTCTGGCC-GGGggttgggagtgtggactttgcagcggctcctctcgggctggagtcctggcttcctgtccttcttgctgggagactttgcaagtt--acaactggccggcctccacgtcctcctctgcaggacgggCTCCT-CCGTGAGTGAGACAGTGTCCAGCTCAGCTCGGCGCCGGGCAC-CCGGGGACCGCACTCGGCTCTGCCGCTCTCGTTATTGTGCTTGTTGCTGTTGTCACTGTGACGCTCTGCCTTCC-TGCTGTTGAGCCTGCTGGCTGGTTGCACGTGACTTTGGACACCCATTTCCAGATGCCCGGGCCTGCACGCATCCGTGGGGTTGCCATGGAAACGGCACTGCAAGGATGGCAG-AGCCACCGGGTGAACATTGTCGGAGTTTCACAGGCACCGC i calJac1.Contig17381 C 0 N 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=31111.000000 s hg19.chr21_gl000210_random 19340 68 + 27682 GGCGGGCATCAGCTGATTATCTGCAGTGGGCATCTC--TGTTACTCTGCGAtggtctcgggtctctgtta s rheMac2.chr3 3444860 70 + 196418989 GGCAGGCGCCAGCTGTTTATCGGCAGGGGGCATCTCTGAGTTGCTCCGTGATGGTCTGGGGTCTCTGTTA i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1799688 70 - 4212913 AGCGGGCGCCAGCTGATTATCTGCAGTGGGCATCTCTGTGTTGCTCTGCGATGGTCTGGGGTCTCTGTTA i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3575891 68 - 46489110 GGCGGGCGCCAGCTGATTATCTGCAGTGGGCATCTC--TGTTGCTCTGCGATGGTCTGGGGTCTCTGTGA i panTro2.chr21 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=85306.000000 s hg19.chr21_gl000210_random 19408 94 + 27682 agcatattcactgacacggca-ccactactcccccttgtccaaggccatccccaatgccaccctaaggcagcttttactttggaaatcttta-tta s calJac1.Contig12142 413 92 + 49942 AGCATCTTCACTGACACAGCA-CCGATACTCCCTCTTGCCCAAGGCCAT-CCTGGCGCCACCC-GAGGCAGATTTTACTTTAGAAATCTTTA-TCA i calJac1.Contig12142 N 0 C 0 s rheMac2.chr3 3444930 94 + 196418989 AGCATCTTCACTGACACAGTG-CCAACACTCCCCCTTGTCCGAGGCCATCCCCGACGCCACCCAAAGGCAGCTTTTACTCTAGAAATCTTTA-TTA i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1799758 94 - 4212913 AGCATCTTCACTGACACAGCA-CCGATACTCCCCCTTGTCCAAGGCCATCCCCGATGCCACCCTAAGGCACCTTTTACTTTGGAAATCTTTA-TTA i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3575959 94 - 46489110 AGCATATTCACTGACACGGCA-CCAATACTCCCCCTTGTCCAAGGCCATCCCCGATGCCACCCTAAGGCAGCTTTTACTTTGGAAATCTTTA-TTA i panTro2.chr21 C 0 C 0 s micMur1.scaffold_11864 10793 86 + 49305 ----------CCAGCGCAGCAGCCAGTCCTCCTCCCGGTCTGGGGCCATCCCTGGCCCTCCTCGAAGGCAGATTTTACTTTAAAAGTCTTGGCTTA i micMur1.scaffold_11864 N 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=144927.000000 s hg19.chr21_gl000210_random 19502 174 + 27682 tGACTTTATTTCCTA----TTTAATTTATTAGACTCCTTTGATGAGAAATAACACC-TAAGTTTCCCCTACTCTCCTTTAAAACAAATTCCCCTCCATGGTTTCTGTGT--CTCCTCCTCCTTCGCTGTCTGAGTTTCTTGGCTTCTCTGTTTGAATCAGTGCCCAGCTCTGTGGAGGGTC s micMur1.scaffold_11864 10879 122 + 49305 TGATTTCATTTCAGA----TCTAGTTTGTTAGACTCATTGGATGTGAAAGAACGTC-CACGTTTCCCACCCTCCCCTTC------------------TCATTTCTGTCTCTCTCCTTTCCCTCTGCTGCCTTGGTCTCACGGCCT------------------------------------ i micMur1.scaffold_11864 C 0 C 0 s panTro2.chr21 3576053 173 - 46489110 TGACTTTATTTCCTA----TTTAATTTATTAGACTCCTTTGATGAGAAATAACACC-TAAGTTTCCC-TACTCTCCTTTAAGACAAATTCCCCTCCATGGTTTCTGTGT--CTCCTCCTCCTTCGCTGTCTGAGTTTCTTGGCTTCTCTGTTTGAATCAGTGCCCAGCTCTGTGGAGGGCC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1799852 171 - 4212913 TGACTTTATTTCCTA----TTTAATTTATTAGACTCCTTTGATGAGAAATAACACC-TAAGTTTCTCCTACTCTCCTTTAAAACAAATTCCCCTCCATGGTTTCTGTGT-----CTCCTCCTTCGCTGTCTGAGTTTCTTGGCTTCTCTGTTTGAATCAGTGCCCAGCTCTGTGGAGGGTC i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3445024 174 + 196418989 TGACTTTATTTCCAA----TTTAATGTATTCCACTCATTTGATGAGAAATAACACC-TACATTTCCCCTACTCTCCTTTAAAACAAATTCCCCTCGATTGTTTCTGTGT--CTCCTCCTCCTTCGCTGTCTGAGCTTCCTGGCTTCTCTGTTTGAATCAGTGCCCAGCTCTGTGGAGGGTC i rheMac2.chr3 C 0 C 0 s calJac1.Contig12142 505 174 + 49942 TGACTGTGTTTCAAA----TTTAACTTACGAGACTCATTTGATGAGAAGTAACACT-GAAGCTTCCCCTGCTCTCCTTGAAAACAAATTATCCTCGGTGGTTGCTGCCT--CTCCTCCTCCTTTGCTGTCTGAGTTTCTTGGCTTCTCTGTTTGAATCGGTGCCCAGCTCTGCAGAGACCC i calJac1.Contig12142 C 0 C 0 s xenTro2.scaffold_607 445612 168 - 668372 TTACTTTTTTCCCTGTCTCTTTAAGTTTCACCACTTCTTCCTT---AGCTACCACCTTGTGCTTCTCTTCCTTCCCACC--------TGTTACTTCGGGGTTTTTTTCT--TTGGGTTTCTCTTGTTCCCTGGGTGTCTCTGTGTCTTTCTTTTCTTTCCCACCTCCCTCTGTGTATTGTC i xenTro2.scaffold_607 N 0 N 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=26709.000000 s hg19.chr21_gl000210_random 19676 42 + 27682 TGCGGCTGCTGCCTCTGCCAGTGCTGGTCCCACCCCGTCGCA s micMur1.scaffold_11864 11001 8 + 49305 ---------------------------TGTCACCC------- i micMur1.scaffold_11864 C 0 C 0 s panTro2.chr21 3576226 42 - 46489110 TGCGGCTGCTGCCTCTGCCGGTGCTGGTCCCACCCCGTCGCA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1800023 42 - 4212913 TGCGGCTGCTGCCTCTGCCAGTGCTGGTTCCACCCCGTCGCA i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3445198 42 + 196418989 TGCAGCTGCTGCCTTTGCCAGTGCTGGTCTCACCCCGTCGCA i rheMac2.chr3 C 0 C 0 s calJac1.Contig12142 679 40 + 49942 TGTGGCTGCTGCC--TGCCTGTGCTGGTCCCGCACTGTCACA i calJac1.Contig12142 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=160775.000000 s hg19.chr21_gl000210_random 19718 200 + 27682 GAAAACACATTTATGAGAAGGCGTGGGGCGGACAG-AAGATGCCCCGTCCT-GGACTCCACGCCCGGCCTGGGGGCAGTGGGG-CCCTGAGGTGTCCTGGCTCTTGTTGA-GAAAAGTATTAGTATTGGGCTGGAACCCCGAGAACGAACCAGAAATTTCAAGGGGCGTTGCCCTTATCTAATTTTGTGTCCTT-TCTGTTTTTT s calJac1.Contig12142 719 197 + 49942 GGAAACACGTTTATG---AGGTGTGGGGCGGACGG-AAGATG-CCCGGCCT-GGACTCCCAGCCTGGCCTGGGGGCAGCGGGA-CTCTGACGTGTCCCGGTTCTTGTTGA-GAAAAGCGTTAGTGTTGGGCTGGAACCCCCAGAATGTACCAGAAATTTCAAGGGACATTGCCCTTGTCTAATTCTGTGTCCTTTTTTGTTTCTT i calJac1.Contig12142 C 0 C 0 s rheMac2.chr3 3445240 191 + 196418989 GAAAACACGTTTATGAGAAGGTGTGGGGCGGACGG-AAGATGCCCCAGCCT-GGACTCCCGGCCTGGCCTGGGGGCAGCAGGGCCCCCGAGGTGTTCTGGCTCTTGTTGA-GAAAAGTATTGGTGTTAGGCTGGAACCCCAAGAACGAACCAGAAATTCTGAGGGGCATTGCCCTTATCTAATTTTGTGTCCTT----------- i rheMac2.chr3 C 0 I 16 s ponAbe2.chr21_random 1800065 200 - 4212913 GAAAACACGTTCATGAGAAGGCGTGGGGCGGACGG-AAGATGCCCCATCCT-GGACTCCCTGCCCGGCCTGGGGGCAGTGGGG-CCCTGAGGTGTTCTGGCTCTTGTTGA-GAAAAGTATTAGTATTGGGCTGGAACCCCGAGAACGAACCAGAAATTTCAAGGGGCATTGCCCTTATCTAATTTTGTATCCTT-TCTGTTTTTT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3576268 200 - 46489110 GAAAACACATTTATGAGAAGGCGTGGGGCGGACAG-AAGATGCCCCGTCCT-GGACTCCATGCCCGGCCTGGGGGCAGTGGGG-CCCTGAGGTATTCTGGCTCTTGTTGA-GAAAAGTATTAGTATTGGGCTGGAACCCCGAGAACGAACCAGAAATTTCAAGGGGCGTTGCCCCTATCTAATTTTGTGTCCTT-TCTGTTTTTT i panTro2.chr21 C 0 C 0 s micMur1.scaffold_11864 11009 137 + 49305 GAGAATG-------GGGGTGTCGGGGTGTGGGCAG--------------------CTCGTGGCCCAGCCCGGG-------GAG-CCCC---GTGCCCCGGAGCTTGGTGAGGAAGAGCA----CGCTGGGCGGGGACACCGAGAACAAACCGGAAACGTCCAGGGTCACTGCCTTTATC-------------------------- i micMur1.scaffold_11864 C 0 M 609 s proCap1.scaffold_32406 13822 167 + 20207 GGAAGCAGGTTTATGGGACAGTGTGGAATATGTAGGAAAATGCCTTGACCTAAGAATCCCCACCTG---------CAGCAGGA-CCTC-----------------------TGTAAGCAGAGGCCTCAGGCTGCAATCCACAGA----ACCAGAAGTCCCAAGTGTCATCATTATTACTTTAGTTTATGTATCT-TTTCTTTTTT i proCap1.scaffold_32406 N 0 I 361 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=187966.000000 s hg19.chr21_gl000210_random 19918 249 + 27682 AAACGTTAGAGACCTTTGGTCCGCCATGTTTGCGTTCACCTTTTAGCATTTTTGGCCCCAGGCTTAGTTTCATCAAATCCA-CTTTCTGCACAGCA--AGTGCCCG----TTGTGAGCTCATCCTCCACTGGCACTTCCATTTCATGGGCATCTCTGCGTATCAGAAGTAGCTTCCTGCGGTCTGGTGCAT-TGTAGC-CGTTC------CAAG----AGCAAGAAGAGCAGAAAGAAGAAAAA-GCACTCAGCCCCTCCAGGCCAAAT s calJac1.Contig12142 916 245 + 49942 AAACTTTAGAGATCTTTGGTCCACTGCG-------------TTTAACAGTTTTGGGCCCAGGCTTGGTTTAATCAAATCCA-CTTTCTGCTCAGCG--AGTGTCAGGTGTGTGTGAGCTCGTCCTCCACTGGCACATCCATCTCCTGGGTGTCTCTGCGTATCGGAAGTAGCTTCTCACGGACTGGTGCAT-TGTGCC-CGTTC------CAAGAGCAAGCAAGAGCGGCGGGAAGCAGGAAACGGCACTCAGAGCCTCCCAGCCGAAC i calJac1.Contig12142 C 0 C 0 s ponAbe2.chr21_random 1800265 249 - 4212913 AAACGTTAGAGACCTTTGGTCCGCCATGTTTGCTTTCACCTTTTAGCATTTTTGGCCCCAGGCTTAGTTTCATCAAATCCA-CTTTCTGCTCAGCA--AGAGCCCG----TTGTGAGCTCATCCTCCACTGGCACTTCCATTTCATGGGCATCTCTGCATATCGGAAGTAGCTTCCTGCGGTCTGGTGCAT-TGTGCC-CGTTC------CAAG----AGCAAGAAGAGCAGAAAGAAGAAAAA-GCACTCAGCCGCTCCAGGCCAAAT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3576468 249 - 46489110 AAACGTTAGAGACCTTTGGTCCGTCATGTTTGCTTTCACCTTTTAGCATTTTTGGCCCCAGGCTTAGTTTCATCAAATCCA-CTTTCTGCACAGCA--AGTGCCCG----TTGTGAGCTCAAACTCCACTGGCACTTCCATTTCATGGGCATCTCTGCATATCAGAAGTAGCTTCCTGCGGTCTGGTGCAT-TGTGCC-CGTTC------CAAG----AGCAAGAAAAGCAGAAAGAAGAAAAA-GCACTCAGCCCCTCCAGGTCAAAT i panTro2.chr21 C 0 C 0 s proCap1.scaffold_32406 14350 245 + 20207 AAACGTTAGAAGCTTTTGATTGGCCATCTTTCCTTTCACCTCTTAGCATCGT--GACTCCTTCTTAGTTCAGTCAAATCTGTCTTTAAGTCCAATGTCTATGCCTGG---TGGTAATCTCATCTGCCATCTTTATTCTCATGTTGTTGACATTTC-------------TAGGTCCCTGCTGAATGTTGTGTCTGTATCTTGTTC------CAAGAATAAATGAGGGCAATGGAGAGAAAGGTAAAGAAACTTTGTCCTGCTGGCAGGAG i proCap1.scaffold_32406 I 361 C 0 s rheMac2.chr3 3445447 252 + 196418989 ----GTTAGAGATCTTTGGTCCGCCATGTCTGCGTTTACCTTTTAGCATTTTTGGCCCCAGGCTTAATTTCATCAAATCCA-CTTTCCGCTCATCG--AGTGCCCG----TTGTGAGCCCATCCTCCACGGGCACTTCCATTTCATGGGCATCTCTGCGTATCGGAAGTAGCTGTCTGCGGTCTGGTGCAT-TGTGCC-TGTTCCAAGAGCAAG----AGCAAGAACAGCAGAAAGAAGAAAAAGGCGCTCAGCCCCTCCAGGCCACAT i rheMac2.chr3 I 16 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_11864 11146 609 + 49305 M a score=243956.000000 s hg19.chr21_gl000210_random 20167 224 + 27682 CGCATCGCAGTTTTGGAAGACTCCTGTTACCTTGGTGTTTTCTCTCCTGGTTTCATTGGCCTTCTGACTGCTGGGAGCAAAGGTTAAATATTTCAAG-GGAGCAATCGTAATCCTTCTGTTCAGCCCCAGCCCTTGCCAGAGACTTGGGAGTTGCCTGGTTTAGGCACCAGCAGCTCAGCAAA-----CACCCACC------GCCTCTGGCCACCAATTTGCAAGGTCGGTTTGTG s tarSyr1.scaffold_239151 2469 210 + 3777 CACATCACAGCTTTGGGTGAATATTGTCTCCCGGGC-CTGTCTCTCCTGGTTTCA-------CCTGACCAGAGGGAGTGAGGCATACCCATTTCCTG-TGTGCAATC---ACTCTCCCCTTCAGGTTCATGTCTCGCCA--CACTTTGGAGCTTCTTTGTCTAGA-GCAAGCAGCTCAGCAAA-----TACCTGCT------GCCTCTGGTCACCAACTTGAAATGTCAGTTTCCA i tarSyr1.scaffold_239151 N 0 C 0 s calJac1.Contig12142 1161 224 + 49942 CGCACCGCAGTTCTGGAAGGCCCCTGTCACCGTGATGTTTTATCTCCCGGTCTCATTGGCCTTCCGATTGCTGGGAGCAAAGGTTAAATATTTCATG-GGAGCAGCTGAAACCCTCCTGTTCAGCCCCAGACCTCACCAGAGACTCAGGAGTTGCCTGGTCGGGGCACCAGCAGCTCAGCAAA-----CACCCGCC------TCCACTGGTCAGCAATTTGCAATGTTGGTTTGTG i calJac1.Contig12142 C 0 C 0 s rheMac2.chr3 3445699 224 + 196418989 CGTGTCGCAGTTCTGGAAGACTCCTGTTACCTTGGTGTTTTCTCTCCTGGTTTCATTGGCCTTCTGATTGCTGGAAGCAAAGGTTAAATATTTCAAG-GGAGCAATTGAAATCCTTCTGTTCAGCCCCAGCCCTCGCCAGAGACTCAGGAATCACCTGGTCTAGGCACCAGCAGCTCAGCAAA-----CACCCGCT------GCCTCTGGCCACCAATTTGCAATGTCGGTTTGTG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1800514 224 - 4212913 CACATCTCAGTTTTGGAAGACTCCTGTTACCTTGGTGTTTTCTCTCCTGGTTTCATTGGCCTTCTGATCGCTGGGAGCAAAGGTTAAATATTTCAAG-GGAGCAATCGAAATCCTTCTGTTCAGCCCCAGCCCTTGCCAGGGACTTGGGAGTTGCCTGGTCTAGGCACCAGCAGCTCAGCAAA-----CACCCACC------GCCTCTGGCCACCAATTTGCAATGTCAGTTTGTG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3576717 224 - 46489110 CGCATCGCAGTTTTGGAAGACTCCTATTACCTTGGTGTTTTCTCTCCTCGTTTCATTGGCCTTCTGATTGCTGGGAGCAAAGGTTAACTATTTCAAG-GGAGCAATCGTAATCCTTCTGTTCAGCCCCAGCCCTTGCCAGAGACTTGGGAGTTGCCTGGTCTAGGCACCAGCAGCTCAGGAAA-----CACCCACA------GCCTCTGGCCACCAATTTGCAATGTCGGTTTTTG i panTro2.chr21 C 0 C 0 s proCap1.scaffold_32406 14595 235 + 20207 GATGTAACAGTTTGGGATGAGTTTTGCCCCTTTGGAAATCTCTCTCTTCACCTCACTGGTCTTCTGTTTGGTGGGGGTGAGAGCCATATACTCCATGCAGAGTAGCAGCACCCCTTCCCTTCAGCCTCAGACGTCACCAGAGATTCTGTAGTTCCTTTCTCTTAA-ACAAGCAGCTCAGTCAAGCAGTCAGCCATCTGTGGTGGCTCCGGCTGCTGATTTGAAAGACCAGTTCATG i proCap1.scaffold_32406 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I e micMur1.scaffold_11864 11146 609 + 49305 M a score=70758.000000 s hg19.chr21_gl000210_random 20391 71 + 27682 CAGACAGGAGGCCTCCC-CTCCCTCTGCGGGAAGCAGGTGCTGGCCTCTCCTCAGCCTCCAGCCATGCGGAG s panTro2.chr21 3576941 71 - 46489110 CAGACAGGAGGCCTCCC-CTCCCTCTGCGGGAAGCAGGTGCTGGCCTCTCCTCAGCCTCCAGCCACGCAGAG i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1800738 70 - 4212913 CAGACAGGAGGCC-CCC-CTCCCTCTGCAGGAAGCAGGTGCTGGCCTCTCCTCAGCCTCCAGCCGTGCGGAA i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3445923 67 + 196418989 CAGACAGGAGGCCTCCC-CTCCCTCCATGGGAAGCAGGT----GCCTCTCCTCAGCCTCCAGCCGTGTGGAG i rheMac2.chr3 C 0 C 0 s calJac1.Contig12142 1385 71 + 49942 CAGACAGGAGGCCTACC-CTCCCTCTACCAGAAGCAGGTGCAGGCCTCTCCTTGGCCTCCAATTGTGCAGAG i calJac1.Contig12142 C 0 C 0 s tarSyr1.scaffold_239151 2679 67 + 3777 CAGACAAGAAGCCTCCC-CTCTGGCAGCTGAAAGCAG--TCAGGCCTCTCCTTAGCCTCT-GCCTCACGG-G i tarSyr1.scaffold_239151 C 0 C 0 s micMur1.scaffold_11864 11755 62 + 49305 CAGACGGGGGCCC---C-TTCCCGCAGCTGG--GCAGACGCCGGGCTCTCCCCGGCCTGC--CCACGCGG-- i micMur1.scaffold_11864 M 609 C 0 s proCap1.scaffold_32406 14830 65 + 20207 CTGGTTGGAGACATCCCACCCCCACAGCTGGA-------GCCCACCTCATACCTGGGTCCAGCCTCTTGGAG i proCap1.scaffold_32406 C 0 I 1848 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=146885.000000 s hg19.chr21_gl000210_random 20462 195 + 27682 CCTCTCACCTGGGGCCCGTCGCTTCCACT---------CAAGGAGGC--AGATGG----AGGAAGGAAGCCCAGGAGGCTCC---TGAGGATGCCTCCACC-AGGGGGCACAGTCTCTGGAGGGGCGGAGTCTTGCACGGTGGGTCTGCACTGGAGGGC-AGCCAGCAGGGTGC-AGCTCTGCCAGGCACA-TGCCCCCTTGCAGCACTCTTTGGGC s micMur1.scaffold_11864 11817 189 + 49305 --CATCA-CTGTGGCCGGCTGCTCCCACCTGTTTGTAGCGAGGACGC--CGGAGGGGACGGACAGGAAGGCCAGGAGGCCTC---TGCG-ATGCCACCGTC-GCCGGGCGGGG---CTGGG-------AGTCCTGCACAGCGGGCCGAT----GGGGGC-TGCTGGCCGGGTGCTCACTCCGTCAGGGCAA-AGGCCCTTCCCAGCTCTC--TGGGC i micMur1.scaffold_11864 C 0 C 0 s tarSyr1.scaffold_239151 2746 185 + 3777 CCCCTCACCT-GGGCCAGCTGCATTCACT---------CACTGTTTCTAAGGAGG----AGGAA-GAGGCCTGGGAGGGCCC---CTCACTGGGCCCCCTC-ACTGGACCCCCTCACTGGA---CCCAATTCTCCCTCGGGG--------CTGAGTATCTTGCTAGCAGGGTGT-GGCTCTGCCAGGGCTC-GGGCCCCTTCCAGCTGTCTCTGGGT i tarSyr1.scaffold_239151 C 0 C 0 s calJac1.Contig12142 1456 184 + 49942 TCCCTCACCTGGGGCCCACCGCTTCCACT---------CAAGAGGGC--AGATGT----AGGAAAGAAGCCCTGGAGGCTCCCAGCAGGGACACCTCTGCC-ACAGGGCACAGTGTCTGGAGGGGCTGAGCCTTGCGCTGTGGGTCTGCCCTGGAGGG--------------GC-AGCTCTGCCAGCCACACCGCCCCCCTGCAGCGCTC--TGGGC i calJac1.Contig12142 C 0 C 0 s rheMac2.chr3 3445990 195 + 196418989 CCCCTCACCTGGGGCCCGCCGCTTCCACT---------CAAGGAGGC--AGATGG----AGAAAGGAAGCCCAGGAGGCTCC---CGAGGACACCTCCACCAAGGGGGCACGGTCTCTGGA-GGGCCGAGTCTTGCACGGTGGGTCTGCACTGGAGGGC-GGCCAGCAGGGTGT-AGCTCCGCCAGGCACA-CGCCCGCTTGCAGCACTCTTTGGGC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1800808 166 - 4212913 CCCCTCACCTGGGGCCCGTCGCTTCCACT---------CAAGGAGGC--AGATGG----AGGAAGGAAGCCCCGGAGGCTCC---TGAGGACGCCTCCACC-AGGGGGCACGGTCTCTGGAAGGGCCGAGTCTTGCACGGTGGGTCTGCACTGGAGGG-------------------------------CA-TGCCCCCTTGCAGCACTCTTTGGGC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3577012 195 - 46489110 CCCCTCACCTGGGGCCCGTCGCTTCCACT---------CAAGGAGGC--AGATGG----AGGAAGGAAGCCCAGGAGGCTCC---TGAGGATGCCTCCACC-AGGGGGCACAGTCTCTGGAGGGGCGGAGTCTTGCACAGTGGGTCTGCACTGGAGGGC-AGCCAGCAGGGTGC-AGCTCTGCCAGGCACA-TGCCCCCTTGCAGCACTCTTTGGGC i panTro2.chr21 C 0 C 0 e proCap1.scaffold_32406 14895 1848 + 20207 I e pteVam1.scaffold_24879 574 4786 - 9631 I a score=190420.000000 s hg19.chr21_gl000210_random 20657 160 + 27682 CAAAGGGACTTGGAAGGTGACCAGAGGGTTTAAAAGTCCACGTGCCCTTCT------TTGCAAGCAT-GGGCAGTTCCCTTCGTGGTTTCCTCTGGGGAGCCGGTAACAATGTGTGGACAGTAAGGGCATTGCCAACTTTAATGAGTCTGGACCCTCAAGGC---CCCTG s panTro2.chr21 3577207 160 - 46489110 CAAAGCAACTTGGAAGGTGACCAGAGGGTTTAAAAGGCCACGTGCCCTTCT------TTGCAAGCAT-GGGCAGTTCCCTTCGTGGTTTCCTCTGGGGAGCCGGTAACGATGTGTGGACAGTAAGAGAATTGCCAACTTTAATGAGTCTGGACCCTCAAGGC---CCCTG i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1800974 160 - 4212913 CAAAGGGACTTGGAAGGTGACCAGAGGGTTTAAAAAGCCATGTGCCCTTCT------TTGCAAGCAT-GAGCTTTTCCCTTCATGGTTTCCTCTGGGGGGCTGGTAACGATGTGTGGACAGTAAGGGAAGTGCCAGCTTTAATGAGTCTAGCCCCTCAAGGC---CCCTG i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3446185 159 + 196418989 CAAAGGGGCTTGGAAGGTGACCAGAGGGTTTAAAAGGCCACATGCCCTTCT------TTGCAAGCAT-GGGCTGTTCCCTTCGTGGTTTCCTCTGGGGAGCCGGTAACTATGTGTGGACAGTAAGGGAAGTGCCAGCTTTGATGAGTCTAG-CCCTCAAGGC---CCCTG i rheMac2.chr3 C 0 C 0 s calJac1.Contig12142 1640 159 + 49942 CAAAGGGGCTTGGAAGATGACCAGAGGGGTTAGAAAGCCACGTGCCCTTCT------TTGCAAGCGTGGGGCAGTTCCTTTCGTGGTTTCCTCTGGGGAGCTGGTGACA--GAGTGGACAGTAAGGGAAGTGCCAGCTTTAAGGAGTCTGTCCCTTCGAGGC---CCCTG i calJac1.Contig12142 C 0 N 0 s tarSyr1.scaffold_239151 2931 153 + 3777 C-AAGGGTCTTGGAAGATGGCAGGGGTTTTCAAAAGCATGTGTTCCCCCCTACCCCCATGCAAGCAC-AG--------------TGTTTCCTCTGGGGAGTTGGGGACAATGTTTGGACAGTGAGGAAAAGGCCAGCTTTCGTGGGTCCAGCCCCTCCACACCCGCCCT- i tarSyr1.scaffold_239151 C 0 C 0 s micMur1.scaffold_11864 12006 157 + 49305 C-AAGCGGCTCGG-AGACGACCAGGGGGTTTGCAAGGCC-CGTGGCCCCCC-------TGCAAGCAC-GG--CGGCTCCTTTGTGGTTTTCTCCACGGAGCTGGTGACCGCATTTGGACAGCGGGGGCAACACCAGCCCGAATAGGTCCAGCCCCTCCAGGCCACCCCCG i micMur1.scaffold_11864 C 0 C 0 s proCap1.scaffold_32406 16743 139 + 20207 CAACAGGGCCTGGGAGACGGTGAGGGAGTTTTGAAGGTTACGTGCTCCTCT------ATGCACGTGC-GA----------------TCTCCTCCAGGG-GCAGGTGACTATGTCTGAACCGTAAGAGTAACTTGAGCTTCAGTGGATC-------TCAAGAGTGTCCCTG i proCap1.scaffold_32406 I 1848 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=185864.000000 s hg19.chr21_gl000210_random 20817 195 + 27682 TGAAAGGCAGCTTCGGGGACAAT--GATGGAAGAGGGGACA---GGCTCCCAAAGACCCCAGAGGCCCAGGAGGCATCATGGTCAATGCA----GCTGACCTGGAGCTGCCAGCAGACCCCTGGAACCAATCCTCGGGAAGTGTGGACAAAGGGCTAAAAGCTCCGATGGATGGAGCGCCCAAGC-----CAGAaataaatgaatgaat s rheMac2.chr3 3446344 195 + 196418989 TGAAAGGCAGCTTCGGGGACAAT--GATGGAAGAGGAGACG---GGCTCCCAAAGACCCCGGAGGCCCAGGAGGTATCATGGTCAATGCA----GCTGACCTGGAGCTTCCAGCAGACCCCTGGAACCAATCCTCGGGAAGTGTGGACAAAAGGCTAAAAGCTCTGATGGGTGGAGCATCCAAGC-----CAGAaatgaatgaatgaat i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1801134 195 - 4212913 TGAAAGGCAGCTTCGGGGACAAT--GATGGAAGAGGGGACA---GGCTCCCAAAGACCCCAGAGGCCCAGGAGGCATCATGGTCAATGCA----GCTGACCTGGAGCTGCCAGCAGACCCCTGGAACCCATCCTCGGGAAGTGTGGACAAAAGGCTGAAAGCTCTGATGGGTGGAGCATCCAAGC-----CAGAaatgaatgaatgaat i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3577367 195 - 46489110 TGAAAGGCAGCTTCGGGGACAAT--GATGGAAGAGGGGACA---GGCTCCCAAAGACCCCAGAGGCCCAGGAGGCATCATGGTCAATGCA----GCTGACCTGGAGCTGCCAGCAGACCCCTGGAACCAATCCTCGGGAAGTGTGGACAAAGGGCTAAAAGCTCCGATGGGTGGAGCGCCCAAGC-----CAGAAATAAATGAATGAAT i panTro2.chr21 C 0 C 0 s tarSyr1.scaffold_239151 3084 198 + 3777 GGAAAGGAAACTTCAGGGACAAT--GATGGAAGAGTGGATG---GGCTGCCCAGAGGCCCAGAGGTCCAGGAGGTATCATGGTTAAAGCAGTTGGCTGGCAGGAAAATGTCTGGAGACCCCT-GAGCCAGTCCTTGAGGAGTGTGGATAAAAGGTTAAAAGCTCTGACTGGTAAAACTTCCAGGC-----AAGAAACAAATGAATGAAT i tarSyr1.scaffold_239151 C 0 C 0 s micMur1.scaffold_11864 12163 179 + 49305 ----AGGGAG-TTCGGGGACAGT--GATGAAAGGGTCCTC--------CCCCAAAGGCCCAGAGGTCTGAGAGGAATCGTGGTCAGCACA----GCTCATGTGTGGGTGTC-GCAGGCCCCA-GACCC--TCCCCAGGAAG-GTGCATAAAAGG-TCAAAGCTGCGGCTGGTGGGATTTCCATAC-----CAGGAATGAAAGAATGAAC i micMur1.scaffold_11864 C 0 C 0 s proCap1.scaffold_32406 16882 194 + 20207 --AGGAGGAGCTGTGAGGTTGAGGAGATGGGACAGTATCCAGAGGGCTCCCTGCAGGCCCAGAACCCC---AGTTACCACTATTCCCATG----GCTGACCTGTAGAT----TGAGTCCCCGAGAGTC-ATCCTTGGGGGCAGGAGAGGAAGAGTTTAAAGTTCTCAC-AGTGGAACTTCCAGGCACTTGAAGAAATGAATGAATGAAT i proCap1.scaffold_32406 C 0 I 204 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=25929.000000 s hg19.chr21_gl000210_random 21012 50 + 27682 gaatgaa----------------tgaaATCCCAGGCTGCTCCAACAGCCACCCAGGGACTCGCTGT s micMur1.scaffold_11864 12342 44 + 49305 GAGGGAC---------------------CCCGAGGTTGCTGCGCTGGGTGCCC-GGGACCTGCTGT i micMur1.scaffold_11864 C 0 C 0 s tarSyr1.scaffold_239151 3282 46 + 3777 AAGTGAA--------------------TTCTGGGGTTGCTCCATTAGCTGCCTGGGAACCTATTCT i tarSyr1.scaffold_239151 C 0 C 0 s panTro2.chr21 3577562 46 - 46489110 GAATGAA--------------------ACCCCAGGCTGCTCCAACAGCCACCCAGGGACTCGCTGT i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1801329 54 - 4212913 gaatgaa------------tgaatgaaACCCCAGGCCGCTCCAACAGCCACCCAGGGACTCGCTGT i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3446539 66 + 196418989 caatcaatcaatcaatgaataaatgaaACCCTAGGCTGCTCCATCAGCAGCCCAGGGACTCGCTCT i rheMac2.chr3 C 0 C 0 e proCap1.scaffold_32406 17076 204 + 20207 I e pteVam1.scaffold_24879 574 4786 - 9631 I a score=253799.000000 s hg19.chr21_gl000210_random 21062 384 + 27682 CCTGACCACAGCCCC-CCACC----AGAGGCGTG----------------CCCGGGGG--AGCCCAGGGATGCACTTCACCAGCAG--------------AGAGCACTGTGGCCCATCCATGGCCAATGCCATGGCGGGTGTGTGCCCC------------------------CCTCACCCGG----------------------------AGAGATGGGGCAGCCCGTGGCCACATCGGGCTTCTGAGGTCAGGAACAGTTACTCCAAGGGGCTGACGGTGATGCCTGGGCAG-GATGGA-------------TGT------------GGGTGGGGG--------TCAGTTGGCTCCTTGG--CTTACCAGTGGGGGACCTGCCTGGTCGCCCCAAGCAG-CAGCGGAGCCTCATGTCAGGCTGCCTGGAGCTG-----------CCCCCGTCTTCCCTCTCCCCAACCCGGAGGGA--AGCTCTGGCAACTCAGCTGGAAATGGGAGGGCAGGATTTCTTA s rheMac2.chr3 3446605 381 + 196418989 CCTGACCACAGCCCC-CCACC----AGAGGTGCG-----------------CCGGGGG--AGCCCAGGGATGCGCTTCACCAGCAG--------------AAAGCACTATGACCCACCCAGGGCCAGTGCCACGGCGGGTGTGTGCCCC------------------------CCTCACCCGG----------------------------AGAGATGGGACAGCCCGTGGCCACATCGGGCTTCTGAGGTCAGGAACGGTTACTCCAAGGGGCTGAGGGTGATGCCTGGGCAG-GATGGA-------------TGT------------GG-TGGGCA--------TCAGTCAGCTCCTTGG--CTCATCAGTGGGGGACCTGCCTGGGCGCCCCAAGCAG-CAGCGGAGCCTCAC-TCGGGTTGCCTGGAGCTG-----------CCCCCCTCTTCCCTCTCCCCAACCCGGAGGGA--AGCTCTGGCGTCTCAGTTGGAAATGGGAGGGCAGGATTGCTTA i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1801383 383 - 4212913 CCTGACCACAGCCCC-CCACC----AGAGGCGTG-----------------CTGGGGG--AGCCCAGGGATGCACTTCACCAGCAG--------------AGAGCACTGTGGCCCATCAGTGGCCAACGCCACGGCGGGTGTGTGCCCC------------------------CCTCACCTGG----------------------------AGAGATGGGGCAGCCCGTGGCCACATCGGGCTTCTGAGGTCAGGAACGGTTACTCCAAGGGGCTGAGGGTGATGCCTGGGCAG-GATGGA-------------GGT------------GGATGGGGG--------TCAGTTGGCTCCTTGG--CTCACCAGTGGGGGACCTGGCTGGTAGCTCCAAGCAG-CAGCAGAGCCTCATGTCAGGCTGCCTGGAGCTG-----------CCCCCCTCTTCCCTCTCCCCAACCCAGAGGGA--AGCTCTGGCGTCTCAGCTGGAAATGGGAGGGCAGGATTGCTTA i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3577608 384 - 46489110 CCTGACCACAGCCCC-CCACC----AGAGGCGTG----------------CCCGGGGG--AGCCCAGGGATGCACTTCACCAGCAG--------------AGAGCACTGTGGCCCATCCATGGCCAATGCCATGGCGGGTGTGTGCCCC------------------------CCTCACCCGG----------------------------AGAGATGGGGCAGCCCGTGGCCACATCGGGCTTCTGAGGTCAGGAACGGTTACTCCAAGGGGCTGAGGGTGATGCCTGGGCAG-GATGGA-------------TGT------------GGGTGGGGG--------TCAGTTGGCTCCTTGG--CTTACCAGTGGGGGACCTGCCTGGTCGCCCCAAGCAG-CAGCGGAGCCTCATGTCAGGCTGCCTGGAGCTG-----------CCCCCCTCTTCCCTCTCCCCAACCCGGAGGGA--AGCTCTGGCAACTCAGCTGGAAATGGGAGGGCAGGACTGCTTA i panTro2.chr21 C 0 C 0 s tarSyr1.scaffold_239151 3328 390 + 3777 -CTAACTGGAGCTCCACTACC----AAAGGCATG-----------------CTGGGGATCCTCCCAGGGGTGTGCTTCAGCAGCAG--------------AAAGCACTGTGACCCATCCAGGGACGACACCATGGCAGGTTTG---CTC------------------------CTATACCTGG----------------------------ACAGGCGGGA-AGCCCTTGATCATATAGGGC-TCTGAGAACAAGAGCTGGGACTCCAAGGGGCTGAGGGCATTGCCTAGGAAGAGAGGGG-------------TGTCCTCCCCACAGAGGGTAGGG----------TGGGAGGCTCCTAGGGCCTGTCCAGTGAAGG-TCTGCCTGTGCTCCCCAAACAGTCCATGGAGCCACAGGTCAGGTGTGCTGGATCTG-----------CCCCCTCTTTCCCTCT---CAGCCCAGAGAGA--GGCTCTAACATCTCAGCTGGAAATCAAAGGACAGGAATGCCTA i tarSyr1.scaffold_239151 C 0 C 0 s micMur1.scaffold_11864 12386 259 + 49305 CCTGCCTGCGGACC--CCACC----AG-GGCGCG----------------CCCAGGAC--AGCCCTAGGCTGTGCT--------------------------------------CACCTGGGGACAGTGCCAGGGCAGGTGAGTG---C------------------------CCGCACCAGG----------------------------ACAGGTGGGG-AGCAC--------------------------------------------------AGGTGTTGCCTGGGCAGGGAGGGA-------------TGT-GGCCCCCCAGGGGGTGGGG---------------------TCGG--C--------GGGGGACCTGCCTGAGCCCCCCACCAGC-CCGCAGAGCCACAT---GGGCCTGTTGGACCTG-----------CCCCC----------------ACCCCCAGGGG--AG-------------GCTGGATGCCGGGGGTGGGGGTTG---- i micMur1.scaffold_11864 C 0 C 0 s proCap1.scaffold_32406 17280 497 + 20207 CATGGCCACAGTGTC-ACACCCTGAACTGGCAAGTTCTGGGTCCCTGATGCTGAGGGG--AACCCAAAGAAAAACACCACCAGGTGTCATACCTTCCATTGAGGCACCAT--CCTGCCTTCCAGCAACTCCCAAACTTCTGTGGGCCTCTTGGGGGGCAGTCCACTGAGATAGTCTTACAGGGTTCCGACAGAGCTAGGTTTGCTGGTTTCACAGATGGGGAGTCCCTTGGCAACACTGGACTTCTGAGGACAACAGCAGGTACTCCAAGGAGCAGACGGTGTCGTGGGGTACA-GATGGAGCATGAAGCCTGTCAT------------GGGTGGTGGGTACAGGCTCAGTTTGCTCCTTAG--CTCCTCAGT---AGATTGGCCTGAGGTCCCCAAGCAG-CTAATGGCACCCACAAAATAATTTCTTAAACTGTGAACTTTGTCTGCTCTCCTTTCCTCTATCCATCCCAGGGGCATGAGGTCTAGCCTTTT-CCTAGAAACCAAAGGGCA-GATTTCTTA i proCap1.scaffold_32406 I 204 N 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=16879.000000 s hg19.chr21_gl000210_random 21446 27 + 27682 TGCTGGG------------TGATGTCAAAAAGGCCCCCT s rheMac2.chr3 3446986 27 + 196418989 TGCTGGG------------TGACATCAAAAACGCCCCCT i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1801766 27 - 4212913 TGCTGGG------------TGATGTCAAAAAGGCCCCCT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3577992 27 - 46489110 TGCTGGG------------TGATGTCAAAAAGGCCCCCT i panTro2.chr21 C 0 C 0 s tarSyr1.scaffold_239151 3718 39 + 3777 TGCTGGAGGTGGGGAGGTTTGAGGTCAAGGACACTCCCT i tarSyr1.scaffold_239151 C 0 N 0 s micMur1.scaffold_11864 12645 17 + 49305 -------------------TGGAGTCAGGGACACCC--- i micMur1.scaffold_11864 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=26480.000000 s hg19.chr21_gl000210_random 21473 42 + 27682 GCCCCCACCTTCAAGATGTAGAGAGAAAGGAGGGCAGAAGCC s rheMac2.chr3 3447013 36 + 196418989 GCCCCCACCTTCA------AGAGAGAAAGAAGGGCAGAAGCC i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1801793 42 - 4212913 GCCCCCACCTTCAAGATGTAGAGAGAAAGGAGGGCAGAAGCC i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3578019 42 - 46489110 GCCCCCACCTTCAAGATGTAGAGAGAAAGGAGGGCAGAAGCC i panTro2.chr21 C 0 C 0 s micMur1.scaffold_11864 12662 35 + 49305 -------CCTTCAGGCCCCAAAGGGGCAGGAGGGCAGAGGCC i micMur1.scaffold_11864 C 0 N 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=254242.000000 s hg19.chr21_gl000210_random 21515 521 + 27682 TGGGGTGCTCCCTCCCTCCAGCAGCTCCCTGGTGATGTGTGTTGCTCTAGCCTGGAGA----------GTGCGTGTGTGTGTGTGCGTGCCCGTCACCCTCTGTCTCTCTTCTTCACTATTGGCAAGCATCCATTTGGTGCCTTCTGCACATCAGGACTGCCA-GTGGGGCGGCCCCAGGGAGGAAGGGAGCTGCTCTCAGCTGGTTCAGGAGCCTCTGTTACTTTTGCTCATCAATGTCCTGTTCATATTTTGAAGCAGCAGATAGGAAGGAGCAGGAATGAATGTGAGAAGCTGTCCTGCCATGAGCTGGTGGAAGAAGGCCCCTCTTTGTTGGGACAGGAGCTGTGTGCCGCACCTTGCACCCTGCTTCCCTCCCCCACCAGCCAGGGTGAGAATGCAGGCCGGTCCCTGTGGTATCAGCGCTATTGGGCTAAAGGACACGCATGGGTGCTGGCTGTTAAGGGGGCCGTCACAGCCCATGCTATGTGGCTCTGGCTTCCTCAGGACCACTAAGGGAGAAGGGGCCCCTG s rheMac2.chr3 3447049 492 + 196418989 TGGGGTGCCCCCTCCCTCCGGCAGCTCCCTGGTGATGTGTGTTGCTCTGGCCTGGAGA------------GTGTGTGTGTGTGTGCGTGCCCGTCACCCTCTGTCTCTCTTCTTCACT----------CTCCATTCGGTGCCTTCTGCACATCA-GACTGCCAGGGGGGGTGGCCCCAGGGAGGAAGGGAGCTGCTTTCAGCTGGTTCAGGAGCCTCTGTTACTTTTGCTCATCAGCGTCCTGTTCGTATTTAGAAGCAGCAGATGGTAAGGAGCAGGAACGAATGGGAAAAGTGGTCCTTCCATGAGCTGGTGGAAGGAGGCCCCTCTTTGTTGGGACAGGAGCTGCGCACCCCAGCTTGCACCCTGCTT-CCTCCCCCACCAGCTAGGGTGAGCGTGGAGGCTGGTCCCCGTGGTATCAGCGCTGTTGAGCTAAAGGACACACGTGGGTGCTGGCTGTTAAAGA-------------CATGC---GTGGCTCTGGCTTCCTCAGGACCACCAAGGGAGAAGGGGCCCCTG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1801835 531 - 4212913 TGGGGTGCCCCCTCCCTCCAGCAGCTCCCTGGTGATGTGTGTTGCTCTAGCCTGGAGAGCgtgtgtgtgtgtgtgtgtgtgtgtgcgtgCCTGTCACCCTCTGTCTCTCTTCTTCACTATTGGCAAGCATCCATTCGGTGCCTTCTGCACATCAGGACTGCCA-GTGGGGTGGCCCCAGGGAGGAAGGGAGCTGCTCTCAGCTGGTTCAGGAGTTTCTGTTACTTTTGCTCATCAATGTCCTCTTCATATTTTGAAGCAGCAGATAGGAAGGAGCAGGAATGAATGTGAGAAGTTGTCCTGCCATGAGCTGGTGGAAGAAGGCCCCTCTTTGTTGGGACAGGAGCTGTGTGCCGCACCTTGCACCCTGCTTCCCTTCCCCACCAGCCAGGGTGAGGGTGGAGGCTGTTCCCCATGGTATCAGTGCTGTCGGGCTAAAGGACACATGTGGGTGCTGGCTGTTAAGGGGGCCATCACAGCCCATGCTATGTGGCTCTGGCTTCCTCAGGACCACCAAGGGAGAAGGGGCCCCTG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3578061 521 - 46489110 TGGGGTGCCCCCTCCCTCCAGCAGCTCCCTGGTGATGTGTGTTGCTCTAGCCTGGAGA----------GTGCGTGTGTGTGTGTGCGTGCCCGTCACCCTCTGTCTCTCTTCTTCACTATTGGCAAGCATCCATTTGGTGCCTTCTGCACATCAGGACTGCCA-GTGGGGTGGCCCCAGGGAGGAAGGGAGCTGCTCTCAGCTGGTTCAGGAGCCTCTGTTACTTTTGCTCATCAATGTCCTGTTCATATTTTGAAGCAGCAGATAGGAAGGAGCAGGAATGAATGTGAGAAGCTGTCCTGCCATGAGCTGGTGGAAGAAGGCCCCTCTTTGTTGGGACAGGAGCTGTGTGCCGCACCTTGCACCCTGCTTCCCTCCCCCACCAGCCAGGGTGAGAATGCAGGCCGGTCCCTGTGGTATAAGCGCTATTGGGCTAAAGGACACGCATGGGTGCTGGCTGTTAAGGGGGCCGTCACAGCCCATGCTATGTGGCTCTGGCTTCCTCAGGACCACTAAGGGAGAAGGGGCCCCTG i panTro2.chr21 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=72035.000000 s hg19.chr21_gl000210_random 22036 100 + 27682 TAGCAAAGAAACATGGTGTTCCAACTGACCCTGGAAGCCTGTTGGCTGGGGAGGGGACAATCTCAGTCAGACTGTTCTCCCAGATGCTCATCCCAGTGCT s calJac1.Contig17381 2941 96 - 14043 TAGCAAAGAAACGTGACGTCCTAACGGACCCTGGAAGCCTGCTGGCTGGGGAGTGGACAATCCCACTTAGACTCCTCTTTCAGA----CAGCCCATTGCT i calJac1.Contig17381 N 0 C 0 s rheMac2.chr3 3447541 96 + 196418989 GAGTAAAGAAACGTGGTGTTCCAACTGACCCTGGAAGCCTGTTGGCTGGGGAGTGGACAATCTC----AGACCCTTCTCCCAGACACCTGTCCCATCGCT i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1802366 100 - 4212913 TAGCAAAGAAACATGGTGTTCTAACTGACCCTGGAAGCCTGTTGGCTGGGGAGTGGACAATCTCAGTTAGACTGTTCTCCCAGATGCCCATCCCATTGCT i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3578582 100 - 46489110 TAGCAAAGAAACATGGTGTTCCAACTGACCCTGGAAGCCTGTTGGCTGGGGAGTGGACAATCTCAGTCAGACTGTTCTCCCAGATGCTCATCCCAGTGCT i panTro2.chr21 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=98974.000000 s hg19.chr21_gl000210_random 22136 137 + 27682 TCCTCTGAGGTCCCTCAGGGAGCAGG----GCCCTGTTCAGTCCCCCAACAAGCCCTTAGAGCCCAGAGCCA----GGCCATGAGCAAAGCC-CATGGTGCCAGGCAGCTGGCGTGTGGTCCTTGGGACAGCTCCAGGAACCTCAA-------- s panTro2.chr21 3578682 137 - 46489110 TCCTCTGAGGTCCCTCAGGGAGCAGG----GCCCCGTTCAGTCCCCCAACAAGCCCTTAGAGCCCAGAGCCA----GGCCATGAGCAAAGCC-CGCGGTGCCAGGCAGCTGGCGTGTGGTCCTTGGGACAGCTCCGGGAACCTCAA-------- i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1802466 137 - 4212913 TCCTCTGAGGCCCCTCAGGGAGCAGG----GCCCCACTCAGTCCCCCAGCAAGCCCTTAGAGCCCAGAGCCA----GGCCATGAGCAAAGCC-CGCAGTGCCAGGCAGCTGGCGTGTGGTCCTTGGGACAGCTCCGGGAACCTCAA-------- i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3447637 137 + 196418989 TCCTCTGAGGCCCCTCAGGGAGCAGG----GCCCCACCCAGTCCCCCAGCAAGCCCTTAGAGCATAGAGCCA----GGCCATGAGCAAAGCC-TGCGGTGCCAGGCAGCTGGCGTGTGGTCCTTGGGACAGCTCCGGGAACCTCAA-------- i rheMac2.chr3 C 0 C 0 s calJac1.Contig17381 3037 100 - 14043 TCCTCTGAGGCCCCTCAGGGAGCAGG----GCCCTGCCCAGTGCTCC------------------AGAGCCA----GGCCATGACCAAAGGC-TGTGGTGCCAGGCAGCCGGAGTGTGGTCCTTGGT--------------------------- i calJac1.Contig17381 C 0 I 17 s dipOrd1.scaffold_20789 5703 142 - 25620 TCCCCGGGGAGCCCCCAAGGCACAGGTGCAGCCCCGCCCCGCCCCCCTCCATGTCCC--------GGAGCCAGGGTGGGCCTGACGGAAGCTGCACCCTCTCCCCGCGCGGGCGGGTGGGCC-TGGGTCAG---CGGGAGCCTGTGGCTCACAC i dipOrd1.scaffold_20789 N 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=125923.000000 s hg19.chr21_gl000210_random 22273 138 + 27682 GTCCTCTGCAGGTACAGCTGCTAATGACAGATAATGACAGACCACAGCCTGGAAGTGGGG-CCCACGGCATCTGACTGGCAGCAGCTGAAAAGAACTTAATGACGGTCTCTGAAAAGGCCC-AGCGGAACCCCCACCTGG s dipOrd1.scaffold_20789 5845 108 - 25620 GTACACTGCCACCGTAGCTCCTAATGGCAGATAATGGCAGGCCACCACCTG----------CCGGCGGCACCTCCCTGGCAA----------------------AGCCTCCGAAAAGACCAGAGCCCAACCCCCGCGCAG i dipOrd1.scaffold_20789 C 0 C 0 s calJac1.Contig17381 3154 138 - 14043 GTCCTCTGCAGGGACGGCTGCTGATGACAGATAATGACCGACCATAGCCCGAAAGTGGGC-TGCTTGGCACCTGACTGGCAGCAGCTGAAAAGAACTTAATGACCGTCTCCGAAAAGACCC-AGCAGAACCCCCACCTGT i calJac1.Contig17381 I 17 C 0 s rheMac2.chr3 3447774 139 + 196418989 GTCCTCTGCAGGTACAGCTGCTAATGACAGATAATGGCAGATCACAGCCTGGAAGTGGGGCCCCACGGCTTCTGACTGGCAGCAGCTGAAAAGAACTTAATGACCGTCTCCGAAAAGGCCC-AGCAGAAGCCCCACCTGG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21_random 1802603 138 - 4212913 GTCCTCTGCAGGTACAGCTGCTAATGACAGATAATGACAGACCACAGCCTGGAAGTGGGG-CCCACGGCATCTGACTGGCAGCAGCTGAAAAGAACTTAATGATGGTCTCCAAAAAGGCCC-AGCGGAACCCCCACCTGG i ponAbe2.chr21_random C 0 C 0 s panTro2.chr21 3578819 138 - 46489110 GTCCTCTGCAGGTACAGCTGCTAATGACATATAATGACACACCACAGCCTGGAAGTGGGG-CCCACGGCATCTGACTGGCAGCAGCTGAAAAGAACTTAATGATGGTCTCCGAAAAGGCCC-AGCGGAACCCCCACCTGG i panTro2.chr21 C 0 C 0 e pteVam1.scaffold_24879 574 4786 - 9631 I a score=254022.000000 s hg19.chr21_gl000210_random 22411 219 + 27682 CACGTGGCAGGAACTCGTGCTTTCCTTTTACTTAGGAGTTGAAGGATCAATTTAGAAAATTGAAGCCAACTACGTCTCACCATCAAATCCCTAAAAGCTGCCCTC---------CCTCTGAGAAGC---TTCCACGCGGCCC-------CCAG------GACCCAGTGCTGC-CACCC------CCAGCCCACAG-CCTCCTGACGTGGAAACTTGGCTGTGGCCAATGGAATTGTCTGCAGGTATCAGGCC s panTro2.chr21 3578957 219 - 46489110 CACGTGGCAGGAACTCGTGCTTTCCTTTTACTTAGGAGTTGAAGGATCAATTTAGAAAATTGAAGCCAACTACATCTCACCATCAAATCCCTAAAAGCTGCCCTC---------CCTCTGAGAAGC---TTCCACGCGGCCC-------CCAG------GACCCAGTGCTGC-CACCC------CCAGCCCACAG-CCTCCTGACGTGGAAACTTGGCTGTGGCCAATGGAATTGTCTGCAGGTAGCAGGCC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1802741 215 - 4212913 CACGTGGCAGGAACTCATGCTTTCCTTTTACTTAGGAGTTGAAGGATCAATTTAGAAAATTGAAGCCAACTACATCTCACCATCAAATCCCTAAAAGCTGCCTTC---------CCTCTGAGAAGC---TTCCA----GCCC-------CCAG------GACCCAGTGCCGC-CACCC------CCAGCCCACAG-CCTCCTGACGCGGAAACTTGGCTGTGGCCAATGGAATTGTCTGCAGGTAGCAGGCT i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3447913 219 + 196418989 CACGTGGCAGGAACTCGTGCTTTCCTTTTACTTTGGAGTTGAAGGATCAATTTAGAAAATTGAAGCCAACTACATCTCACCATCAAATCCCTAAAAGCTGCCCTC---------CCTCTGAGAAGC---TTCCACGCGGCCC-------CCAG------GACCCACTGCCGC-CACCC------CCAGCCCACAG-CCTCCTGGTGTGGAAACTTGGCTGTGGCCAGTGGCATTGTCCGCAGGTAGCAGGCC i rheMac2.chr3 C 0 C 0 s calJac1.Contig17381 3292 228 - 14043 CACATGGCAGGAACTCGTGCTTTCCTTTCACTTATGAGCGGAAGGATCAATTTAGAAAATCGAAGCCATCTACATCTCACCATCAAATCCCTAAAAGCTGCCCCCCGCCAGCCACCACCAAGAAGC---TTCCACACGGGCC-------CCAG------GACCCAGTGCCAC-CACCC------CCAGCCCACAG-CCTCCTGATGTGGAAACCTCGCTGCGGCCAATGGAATCACCTGCAGGTAGCAGGCC i calJac1.Contig17381 C 0 C 0 s dipOrd1.scaffold_20789 5953 220 - 25620 CACGTGGCAAAGACTTGTGATTTTCCTTCACTTCTGAGCTGAAGAATCGATCTAGAAAATTGCAGCCAATTAAGCTGCACTGCCAAATCCCTGGCCGGCGCC-TC---------CCTGTGGGAAGC---------GGGGTCC-------CCGGCGGGGCGACCCTGCCCCACACGCTC------CTCGCCTGCAGCCCTCCCCACAAGGGACCGCCGCAGGGGTGAACAGAAGCAGCTCCGAGGGTCAGGCC i dipOrd1.scaffold_20789 C 0 N 0 s pteVam1.scaffold_24879 5360 230 - 9631 CACGTCACAGGAATTTG---TTTTATTTTACTTCTGAGTCAAAGGACCAATTTAGAGAGTTGCAGCCAAATAAGTCTCACCATCAGACTGCTGGAAGGCACG-CC---------CCTCCGAGAAGCCTCTTCCATGTGGCCCAAGGAGTCAGG------GTCCCCGCGCCCC-CACCCAGGCCACCACTCTCCTG-ACTCCTGACGTGGGACCCTTGTTGTGGCAAGTGGT-TTGTCTGCAGACAGCAGATG i pteVam1.scaffold_24879 I 4786 C 0 a score=351988.000000 s hg19.chr21_gl000210_random 22630 374 + 27682 -GGCCTTTTCAGCAGAGGCGCCTCCCATGTGGAGGGGAACAAAGCCCGTGGAAGCTCAGGGAAGGGAAGAAGTACTGTTTCCTTCTCGTTTGCAGGACTGCAGGGCTTCTTGGAGGTGGGTGGCTGTGACTTTGGGAGCCCAGGGTGACCTTGAATGTCCCCAAGCTGCCGAAGATTTCTGAAATTGAGAAGCTTGGAGAGC-AGGCCCCGTTTCAACGAGCAGAGCCTACAAGGGGTG--CCCTGAAACAGTA------------------------CTGAGGGACACTGAGAAGCAAGGCCTGATGTCCCAGG-GCCAGCAGGAGGCCAGGGGTACAGCTGGGGATCCCAGGTGGCCCTGTTCAGAGAGCACCAGCCCATGTGCCCACC-----CCTGCAGGGAAC s panTro2.chr21 3579176 374 - 46489110 -GGCCTTTTCAGCAGAGGAGCCTCCCATGTGGAGGGCAACAAAGCCCATGGAAGCTCAGGGAAGGGAAGAAGTACTGTTTCCTTCTCGTTTGCAGGACTGCAGGGCTTCTTGGAGGTGGGTGGCTGTGACTTTGGGAGCCCAGGGTGACCTTGAATGTCCCCAAGCTGCCGAAGATTTCTGAAATTGAGAAGCTTGGAGAGC-AGGCCCCGTTTCAACGAGCAGAACCTACAAGGGGTG--CCCTGAAACAGTA------------------------CTGAGGGACACTGAGAAGCAAGGCCTGATGTCCCAGG-GCCAGCAGGAGGCCAGGGGTACAGCTGGGGATCCCAGGTGGCCCTGTTCAGAGAGCACCAGCCCATGTGCCCACC-----TCTGCAGGGAAC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1802956 374 - 4212913 -GGCCTTTTCAGCAGAGGAGCCTCCCATGTGGAAGGGAATAAAGCCCGTGGAAGCTTGGGGAAGGGAAGAAATACTGTTTCCTTCTCGTTTGCAGGACTGCAGGGCTTCTTGGAGGTGGGCGGCTGTGACTTTGGGAGCCCAGGGTGACCTTGAATGTCCCCAAGCTGCCGAAGATTTCTGAAATTGAGCAGCTTGGAGAGC-AGAGCCTGTTTCAACGAGCAGAGCCTGGAAGGGGTG--CCCTGAAACAGCA------------------------CTGAGGGACACTGAGAAGCAAGGCCTGATGTCCCGGG-GCCAGCAGGAGGCCAGGGCTGCAGCTAGGGATCCCAGGTGGCCCTGTTCAGAGAGCACCAGCCCATGTGCCCACC-----CCTGCAGGGAAC i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3448132 374 + 196418989 -GGGCTGTTCAGCAAAGGAGCCTCCTATATGGAGGGAAGCAAAGCCCGTGGAAGCTCGGGTAAGGGAATAAATACTGTTTCCTTCTGGTTTGCAGGACTGCAGGGCTTCTTGGAGGTGGGTGGCTGTGACTTTGGGAGCCCAGGATGGCCCTGAATGTCCCCAAGCTGCCGAAGATTTCTGAAATTGAGCAGCTTGGAGAGC-AGGCCCCGTTTCAGTGAGCAGAGCCTGGAAGGGGTG--CCCTGAAACGGCG------------------------CTGAGGGACACTGAGAAGCAAGGCCTGATGTCCCGGG-GTCGGCAGGAGGCCTGGGCTGCAGCTGGGAATTCCAGGTGGCCCTGTTCAGACAGCACCAGCCCATGTGTCCACC-----CCTGCAGGGGAC i rheMac2.chr3 C 0 C 0 s calJac1.Contig17381 3520 377 - 14043 -AGG-TTTTCAGCAGAGGCGCCTCCCACGTGGAGGGGAACAAAGGCCATGGAACCTC-GGGAAGGGAAGAAACACTTTTTCCTCCTGGTTTGCAGGGCTGCAGGGCTTCTTGGAGGTGGATGGCTGTGACTTTGGGAGCCCAGGGTGACCTTGAATGTCCCCAAGCTGCCAAAGATTTCTGAAATTGAGCAGCTTGGAAAGC-AGCCCCCATTTCAATGAGCAGAGCCTGAAAGGGGTG--CCCCAAAATGGTG------------------------CTGAGGGACACAGAGAAGCAAGGCCTGAGGTCCTGGG-GCTGGCAGGAGGCCAGGACTGCAGCTGGGGACCCCAGGTGGCCCTATTCAGAGAGCACCAGCCCATGTGCCCCCCCTCCGCCTGCAGGGGAC i calJac1.Contig17381 C 0 C 0 s pteVam1.scaffold_24879 5590 369 - 9631 GGGCCTGT--GACCGAGGAGCCTC---------------------CCGTGGGACCTCCAGGAAGAAGGCCACCGCCTCGTCCTCCAGGGCTGCAGGGCTCCGGGGCTTCCTGTAGGTGGG-GGCTGTGACGTC-AGAGCCCAGGG-GGCCGTG-GCATCCTCAAACTGTCAAAG--CTCTGAAACTGAGCAGCGTGGAGAGCGGGGCCCTGTTGAAATAAACAGGGCCTGGAAGGAGTGTCCCCCGAAATGGCGATGCTAGGGAGGGGGGTTCTCATCCTGACGGCCACCAAGAAGCAA-GTCTGA-GTCTTGGGTGGAGACGGGTGGCTACAGCTGCAG-TGGAGACTCCAGATGGCTGTGCTCAGAGGAGACC-GACCGGACACCCACC------CTGCGGGGGAC i pteVam1.scaffold_24879 C 0 N 0 a score=27465.000000 s hg19.chr21_gl000210_random 23004 33 + 27682 TTCAGGGGGTTTCTGAAGGACCTGAGGCCAAGA s panTro2.chr21 3579550 33 - 46489110 TTCAGGGGGTTTCTGAAGGACCTGAGGCCAAGA i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1803330 33 - 4212913 TTCAGGGGGTTTCTGAAGGACCTGAGGCCGAGA i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3448506 33 + 196418989 TTCGGGGGGTTTCTGAAGGACCCGAGGCCAAGA i rheMac2.chr3 C 0 C 0 s calJac1.Contig17381 3897 32 - 14043 TTT-GGGGGTTTCTGAAGGACCCGAGGCCAAGA i calJac1.Contig17381 C 0 I 159 a score=546678.000000 s hg19.chr21_gl000210_random 23037 1120 + 27682 GGAGGAGCTGAGCAGGGAGAGAACTGGAAAGAAGAAAGACAGCCCTGCCTTGCCATTCACTGCTACTGGCCTGCGTGCTCACCAGAACTTGAACAAACCATTAAAAAACCT---GAGAActgggtacagtggctcaggcctgtaatcccagcactttgggaggccaaggtgggcagatcacctgaggtcaggagttcgagaccagcctgggcaacatggggaaaccccatctttactaatagtacaaaaagttagccaggcatagtggtgggtgcctgtaatctcagctacttggaaggctgaggcaggagaatcgcttgaacctgggaggaggttgcagtgagctgagatcacgccattgca------------caacaagagtgaaactctgtctcaaaaaaaaaacaaaacaaaacaaaaaaacac---------acacaagaaaTGGGATCTGGGCTGGGCTTGTGAGCACGAGAATAAGAAGGAGTATTTTTTTCATTGTGATCACAGTTTGCAAAGACTTTTCTTGCACAATTGGGGTGGAAAGTAGGAGAAAGGTCATGGACTGAGGTTCTAGGTTTGGATCCTGCTCctcagcctttctttcctcattgtaaagtgggtttcagtggctgcctggtagggctgttgagagagcacccagagccctggcacctcgcatataacaggcacccagcaactggATCTTAGGGGCTGTTTTGGGAAGGCGGCtgtagtgggttgaatggtggccccccaggaaggtaaatccacatcctaacccccagaacttgtgcatgtgacttatttggaaagggcttttacagatgtttttaaattaaagatctggaaatgaggtcaccacggattatctgggtggaccctaaatccaagagcaagtgttcttataagagaaaagcagaccaggtgtggtgactcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatgcaaaaattagctgggcttggtggtgggcacctgtagtcccaggtactcgggaggctgaggcagaagaatcgcttgaacccaggaggcagaggt s panTro2.chr21 3579583 1118 - 46489110 GGAGGAGCTGAGCAGGGAGAGAGCTGGAAAGAAGAAAGACAGCCCTGCCTTGCCATTCACTGCTACTGGCCTGCGTGCTCGCCAGAACTTGAACAAACCATTAAAAAACCT---GAGAActgggtacagtggctcaggcctgtaatcccagcactttgggaggccaaggtgggcagatcacctgaggtcaggagttcgagaccagcctgggcaacatggggaaaccccatctttactaatagtacaaaaagttagccaggcatagtggtgggtgcctgtaatctcagctacttggaaggctgaggcaggagaatcgcttgaacctgggaggaggttgcagtgagctgagatcacgccattgca------------caacaagagtgaaactctgtctcaaaaaaaaa--aaaaaaaaaaaaagaaaaaa---------aCACAAGAAATGGGATCTGGGCTGGGCTCGTGAGCACGAGAATAAGAAGGAGTATTTTTTTCATTGTGATCATGGTTTGCAAAGACTTTTCTTGCACAATTGGGGTGGAAAGTAGGAGAAAGGTCATGGACTGAGGTTCTAGGTTTGGATCCTGCTCctcagcctttctttcctcattgtaaagtgggtttcagtggctgcctggtagggctgttgagagAGCACCCAGAGCCCTGGCACCTCGCATAAAACAGGCACCCAGCAACTGGATCTTAGGGGCTGTTTTGGGACGGCGGCtgtagtgggttgaatggtggccccccaggaaggtaaatccacatcctaacccccagaacttgtgcatgtgacttatttggaaagggcttttgcagatgttattaaattaaggatctggagatgaggtcaccatggattatctcagtggaccctaaatccaagagcaagtgttcttataagagaaaagcagaccaggtgtggtgactcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatgcaaaaattagctgggcttggtggtgggcacttgtagtcccaggtactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaagt i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1803363 1141 - 4212913 GGAGGAGCTGAGCAGGGAGAGAGCTGGAAAGAAGAAAGACAGCCCTGCCTTGCCATTCACAGCTGCTGGCCTGTGTGCTCGCCAAAACTTGAACAAACCATTAAAAAACCT---GAGagctgggtacagtggctcaggcctgtaatcccagcactttgggaggccaaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggggaaaccccatctttactaatagtacaaaaagttagccggtcatggtggtgggtgcctgtaatcccagctacttggaaggctgaggcaggagaatcgcttgaacctgggaggaggttgcagtgagctgagatcacgccattgcactccaacctgggcaacaagagtgaaactccgtctcaaaaaaaaaacaaaaaaaaacacaaaaaaacaaaaacaaaaaacaaGAAATGGGATCTGGGCTGGGCTTATGAGCACGAGAATAAGAAGGAGTATTTTTTTCATTGTGATCACAGTTTGCAAAGACTTTTCTTGCACAATTGGGGTAGAAAGTAGGAGAAAGGTTGTGGACTGAGGTTCTAGGTTTGGATCCTGCTCCTCAGCCTTTCTTTCCTCATTGTAAAGTGGGTTTCAGTGGCTGCCTGGTAGGGCTGTTGAGAGAGCACCCAGAGCCCTGGCATCTCACATATAACAGGCACCCAGCAACTGGATCTTAGGGACTGTTTTGGGAAGGCAGCtgtagtgggttgaatggtggccccccaggaaagtaaatccacatcctaacccccagaacttgtacatgtgacttatttggaaagggcttttgcagatgttattaaattaaggatctggagatgaggtcaccctggattatctggatggaccctaaatccaagagcaagtgttcttataagagaaaagcagaccaggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactgaaaatgcaaaaattaaccgggcttggtggtgggcacttgtagtcccagctactcgggaggctgaggcaggagaaccacttgaacccaggaggcagaggt i ponAbe2.chr21_random C 0 C 0 s rheMac2.chr3 3448539 1090 + 196418989 GGAGGAGCTGAGCAGGGAGAGAGCTGGAAAGAAGAAAGACAGCCCTGCCTCACCATTCACTGCTGCTAGCGTGCGTGCTCGCCCAAAC--GAACAAACGATTAAAAAACCCGAGGAGagccgggcgcagtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtaaggagttcaagaccagcctggccaacatggtgaaaccccatctttactaacagtacaaaaaattagccaggt---gtggtgggtgcctgtaatcccagctgcttggaaggctgaggcaggagaattgcttgaacctgggaggaggttgcagtgagctgagaccatgccattgcactccaacctgggcaacaagagtgaaactctgtctcaaaaacaaacaaaaacaaacaaacaaaaCAC------------CAAGAAATGGGATCTGGGCTGGGCTTGTGGGCATGAGAATAAGAAGGAATA-TTTTTTCATTGTGATCA--GTTTGCAAAGACCTTTCTTGCACAATCGGGGTGGAAAGTAGGAGAAAGGTCATGGACTGAGGTTCAAGGTTTGCATCCTGCTCctcagcctctctttcctcactgtaaagtgggtttcggtggccacctggtagggctgttgagacagcaaccagagcccc-ttacctcgcgtatagcaggcgcccagcaactggATCTTAGGGACTGTTTTGGGAAGGTGGCTATAGAGGGTT-----------------GAAGGTAAAtccacatcctgacccccagaa---------agggcttatttggaaagggcttttgcagatgttattaaattaaggatctagagatgaggtcaccctggattatctgagtggatcctaaatccaatagcaagtgttcttataagagA-------ATcaggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccgtctttactaaaaatacaaaaataagctaggcatggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaagcggaggt i rheMac2.chr3 C 0 N 0 e calJac1.Contig17381 3929 159 - 14043 I a score=18934.000000 s hg19.chr21_gl000210_random 24157 76 + 27682 tgcagtgagcgagatcgcgccattgcactccagcctgggtgacagagtgaga--ctgtcccccacaaaaaagaaaaaa s panTro2.chr21 3580701 78 - 46489110 tgcagtgagcgagatcgcgccattgcactccagcctgggtgaccgagtgagactctgtccctcccaaaaaagaaaaaa i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1804504 78 - 4212913 tgcagtgagtgagatcgtgccattgcactccagcctgggtgacagagtgagactctgtccccctaaaaaaagaaaaaa i ponAbe2.chr21_random C 0 M 560 e calJac1.Contig17381 3929 159 - 14043 I a score=80857.000000 s hg19.chr21_gl000210_random 24233 892 + 27682 gcagaaggggacctgagacaaacagaagagaagacacagaggcgcagtcagaggagaaagccactgcagacggagtgagcggaggctggagtgacgtggccccaagtcaaggaatgactagcctcctgaagctggaggagacaacgaaggaccctcttctggaattttcagaggggcagggcccctcacaccttgactttgtgcttctggccttgagaacatgagagcaaatttcagttgccctcagtttccaagtccctggtaattagtgtagcagtcccagggcactcacaGAGGCCACAGCCGAAACTCCCAGGGATGACCCTGTACCCATCCTCCACTTTAGCCCCTCAAATGTCCAACTAAAAGCCCTACATCCCCAGCCTCATTTGCATCTAGGAGTGCACGTGACCGTGCAGAGAGGAGCACTGAGTTTGGGTTGAGGGGGCCGTGGAGAAATCTGCTTCAAAAGAAACAGACTCTGCTgggacatgcctttccctttgccctttgctgcctggacaaaggactaaaggctgggacagagcagccatcttgcaaccatgaagcagccaagcacctccactaaaaccccactaggagtggctggaaaaatagacaggtcctgggtccctggtggcatgtggagccTTGTATTCACGttttc---------------tcttttcttttctttttttcttttgatggagtctcactctgtcacccagaacagagtgcagtggcgtgatctcagcttactgcaacctccgcctcccaggttcaagcaaatctccttcctcagcctcccaaataactgagattacaggtgcccgccaccacacgcggctaatttttgtatctttagtagagacagggtttcaccatgttggccaggctggtctca s panTro2.chr21 3580779 907 - 46489110 gcagaaggggacctgagacaaacagaagagaagacacagaggcacagtcagaggagaaagccactgcagacggagtgagcggaggctggagtgatgtggccccaagtcaaagaatgactagccccctgaagctggaggagacaacgaaggaccctcttctggaattttcagaggggcaggacccctcacaccttgactttgtgcttctggccttgagaacatgagagtaaatttcagttgccctcagtttccaagtccctggtaattagtgtagcagccccagggcactcacaGAGGCCACAGCCGAAACTCCCAGGGATGACCCTGTACCCATTCTCCACTTTAGCCCCTCAAATGCCCAACTAAAAGTCCTACATCCCCAGCCTCCTTTGCATCTAGGAGTGCACGTGACCGTGCAGAGAGGAGCACTGGGTTTGGGTTGAGGGGGCCGCGGAGAAAGCTGCTTCAAAAGAAACAGACTCCGCTGGGACATGCCTTTCCCTTTGCCCTTTGCTGCCTGGACAAAGGACTAAAGGCTGGGACAGAGCAGCCGTCTTGCAACCATGAAGCAGCCAAGCACCTCCACTAAAACCCCACTAGGAGTGGCTGGAGAAATAGACAGGTCCTGGGTCCCTGGTGGCGTGTGGAGCCTTGTATTCATGTTTTCtcttttcttttcttttcttttcttttctttttttcttttgatggagtctcactctgtcgcccagaccagagtgcagtggcgtgatctcagcttactgcaacctccgcctcccaggttcaagcgaatctccttcctcagcctcccaaataactgagattacaggcgcccgccaccacacgcagataatttttttatctttagtagagacagggtttcaccatgttggccaggctggtctca i panTro2.chr21 C 0 C 0 e calJac1.Contig17381 3929 159 - 14043 I e ponAbe2.chr21_random 1804582 560 - 4212913 M a score=166078.000000 s hg19.chr21_gl000210_random 25125 655 + 27682 aactcctgacctttagtgatctgcctgcttcagcctcccaaagtgctgggattacaggcatgagccaccatgccctgccTGTTTTTTTATTTTCTATATCTTATGATGTCTGACttatttatttatttttttttagatggaatctcactcagttgccagcctggagtgcagtggcgcgatcttggcttactgcaatctcggcctcctgggttcaagcgattctcctgcctcagcctcccatgtagctgggaTGtttgacatcttaaaagtcttgctggccagggagagactggccttcccagggctacccaactctgagagatactgaagggcagtcctgggcttcttatttacaaaccaaccaatcctgagtctatgcacacgactacctctgtttaactctcatacaccaggccaataatgcccctgctctaaatcatcccagggccaggtgccaggcaactagagacctcccctagagcccaaagcatgccggaattactcgaattagcagatcctgagctgttcccc-gctctacatttcccgaggaaaccccaatacatactctggcctgtgccctctccttgcccatttctgccttctgtccaaaactgctgctccccatacagccctgcgtggcatggcatgcccccca s ponAbe2.chr21_random 1805142 650 - 4212913 aactcctcacctttagtgatctgcctgcttcagcctcccaaagtgctgggattacaggcatgagccaccatgccctgcCTGTTTTTTTATTTTCTATATCTTATGATGTCTGACAt--tttt---ttttttttttgatggaatctcactcagttgccagcctgaagtgcagtggcgtgatcttggcttactgcaatctcggcctcccgggttcaagcgattctccggcctcagcctcccaagtagctgggaTGttcaacttcttaaaagtcttgctggccagggagagactggccttcccagggctacccaactctgagagatactgaagggcagtcctgggcttctcatttgcaaaccaaccaatcccgagtctatgcacacaaccacctctgtttaactctcatacaccaggccactattgccgctgccctaaatcatcccagggccaggtgccaggcaactagagacctcccctagagcccaaagcctgcaggaattattcagattagcagatcctgagctgttcccctgctctgcctttcccaaggaaaccccaataaatactcgggcctgtgccctctccttgcccatttctgccttctgtccaaacctgctgctccccttatggccctgcgtggcatggcatg-ccccca i ponAbe2.chr21_random M 560 C 0 s panTro2.chr21 3581686 642 - 46489110 aactcc----------tgatgtgcctgcttcagcctcccaaagtgctgggattacaggcatgagccaccatgccctgccCGTTTTTTTATTTTCTATATCTTATGATGTCTGACtta-ttat---tttttttttagatggaatctcactcagttgccagcctggagtgcagtggcgcgatcttggcttactgcaatcttggcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggaTGtttgacatcttaaaagtcttgctggccagggagagactggccttcccagggctacccaactctgagagatactgaagggcagtcctgggcttcttatttgcaaaccaaccaatcctgagtctatgcacacgactacctctgtttaactctcatacaccaggccaataatgcccctgctctaaatcatcccagggccaggtgccaggcaactagagacctcccctagagcccaaagcctgctggaattattggaattagcagatcctgagctgttcccctgctctgcctttcccgaggaaaccccaatacatactctggcctgtgccctctccttgcccatttctgccttctgtccaaacctgctgctccccatacagccctgcgtggcatggcatgcccccca i panTro2.chr21 C 0 C 0 e calJac1.Contig17381 3929 159 - 14043 I a score=273200.000000 s hg19.chr21_gl000210_random 25780 582 + 27682 tctcaggacctgtgagtaacaaattcttctttcaatgggattggcttctctgcgttctcattcagttacctccataaattacaatcccaaggacaCAAATGAGACAAGCCTCGACCTCCAGACTCGTTGGGTGAGAAAAATACTAGATTGAGCCATTGAGGCCAATGCCACCTACAAACAAACGCAGTCTCCAAACCAGCCCATGTTGGCATGGCTTGGCCTGCATGGGGCTCTGCTCAGAGGGTGCAACTTGAATTACCACTAAAGGCTCAGCTTTCGTCCCTTGTCCTTGAAGGAAGTTCCTGGGCCAGTCCTCTCCCAGTGTGTCTTCCTTCCCCTCCCCAGGGGAAGGGGAGGGCTCTAGTCAACTGAGGGCTCCATGGATGTGGGCATGGAGACTGGCACACACATTTCTCTCAACCCACCACCAGAGGCCTCAGGGCCCACACCTTCCTCTCTCATTGTACCCTGGCTGTGAAAACACCAGATG----CCGTGTACCTGTGGGGGTAGCCTGGTCCAGCTGGCCAGGGCCCAAGTGCTCATCAGCATAAGAGGTCTCCAACTCTCCGAGATCACAGCATC s panTro2.chr21 3582328 581 - 46489110 tctcaggacctgtgagtaacaaattcttctttcaatgggattggcttctctgtgttctcattcagttacctccataaattacaatcccaaggacaCAAATGAGACAAGCCTCGACCTCCAGACTCGTTGGGTGAGAAAAATACTAGATTGAGCCATTGAGGCCAATGCCACCTACAAACAAACGCAGTCTCCAAACCAGCCCATGTTGGCATGGCTTGGCCTGCATGGGGCTCTGCTCAGAGGGTGCAACTTGAATTCCCACTAAAGGCTCAGCTTTCGTCCCTTGTCCTTGAAGGAAGTTCCTGGGCCAGGCCTCTCCCAGTGTGTCTTCCTTCCCCTCCCCAGGGGAAGGGGAGGGCTCTAGTCAACTGAGGGCTCCATGGATGTGGGCATGGAGACTGGCACACACATTTCTCTCAACCCACCACCAGAGGCCTCAGGGCCCACACCTTCCTCTCTCATTGTACCCTGGCTGTGAAAACACCAGATG----CCGTGTACCTGTGGGGGTAGCCTGGGCCAGCTGGCCAGGGCCCAAGTGCTCATCAGCATAAGAGGTCTCC-ACTCTCTGAGATCACAGCATC i panTro2.chr21 C 0 C 0 s ponAbe2.chr21_random 1805792 579 - 4212913 tctcaggacctgtgagtaacaaattcttctttcaatgggattggcttctctgagttctcatttagttacctccataaattacaatcccaaggacaCAAATGAGACAAGCCTCGACCTCCAGACTCGTCGGGTGAGAAAAATACTAGAGTGAGCCATTGATGCCAATGCCACCTGCAAACAAACGCAGTCTCCAAACCAGCCTATGTTGGCATGGCTTGGCCTGCATGGGGCTCTGCTCAGAGGGTGCAGCTTGAATTCCCACTAAAGGCTCAGCTTTCGTCCCTTGTCCTTGAAGGAAGTTCCTGGGCCAGTCCTCTCCCAGTGTGTCTTCCTTCCCCTCCTCAGGGGAAGGGGAGGGCTCTAGTCAACTGAGGGCTCCATGGATGTGGGCATGGAGACTGGCACATACATTTCTCTCAACCCACCACCAGAGGCCTCAGGGACCACACCTTCCTCTCTGATGGTACCCTGGCTGTGAAAACACCAGATG----CCGTGTACCTGTGGGGGTAGCCTGGCCCAGCTGGCCAGGGCCCAAGTGCTCATCAGCAT--GAGGTCTCC-ACTCTCCAAGATCATAGCATC i ponAbe2.chr21_random C 0 N 0 s calJac1.Contig17381 4088 572 - 14043 tctcaggacctgtgagtaataaattctcctttcaatgAGCTGGGATTCTCTGAGTTCCCACTCAGTAACCTCGACAAATTACAATCCCAAG--------TGAGACAAGCCTCAACCTCCAGCCTCGTTGGGTGAGAAAAATACTAGATTGAGCCACCGAGGCCAAAGCCACCTGCAAAGAAACAC--TCTCCAAAGCAGCCCATGCCGGCACGGCTCGGCCTGTGTGGGGCTCTGACCAGAGAGCACAACTCGAATTCCCATTGAAGGCTCCGCTTTGCTCTCCTGTCCTGGAAGGAACTTCCTGGGCCAGTCCTCCCCCACTGTGTCTTCCATTTCCTCCCT-GGGGTGGGGCTGGGGTCTAGGCAACCGAGGCCTCCATGGATGTGGGCCTGGAGACTGGCACACACACTCCTCTCAACACACC-CCAGAGGCCTCAGGGACCACACCTTCCCCTCTCCTGGTACCCTGGCTGTGGAAACACCAGATGCCGTCCGTGTACCCGTGGGGCT-GCCTGGGCCAGCGGGCCAGGGCCCATGAACTCATCAGCATAAGAGGTCTCC-ACTCTCCAAGATTCCAGCATC i calJac1.Contig17381 I 159 C 0 a score=41920.000000 s hg19.chr21_gl000210_random 26362 185 + 27682 CTATGAGGGAGGCGACAACTGTGGTAACAACGATGGCCATGGTGTGGCCACCTACCGCAGGATCCTCCTCTCTCTtttacaggtgtgaccattgtccctttgatcctcaccacagctctcgggtaaggattgcaactctcatcccattttacagatgcagaagctgagatgctagagatgtgatt s panTro2.chr21 3582909 185 - 46489110 CTATGAGGGAGGCGACAACTGTGGTAACAACGATGGCCGTGGTGTGGCCACCTACCGCGGGATCCTCCTCTCTCTtttacaggtgtcaccattgtccctttgatcctcaccacagctctcgggtaaggattgcaactctcatcccattttacagatgcagaagctgagatgctagagatgtgatt i panTro2.chr21 C 0 C 0 s calJac1.Contig17381 4660 182 - 14043 CTATGA-GGAGGTGACAGCTGTGATAACAATGACAGCGATGGT-TGGCCACCTTTCCCAGGATCC-CCTCTCTCTTTTACAGGTGTGACCATTGTCCTTTTGCTCCTCAACACAGCTCTCGAGTGAGGACTGCAACTCTCAACCCACTTGACAGATGCACAAGCTGAGATGCTGGAGACGTGATT i calJac1.Contig17381 C 0 N 0 a score=30389.000000 s hg19.chr21_gl000210_random 26547 331 + 27682 gtgtcagtttcggaggacatgggggtgaaggcacagctggaatgagagcGTGAAGCACTGGAGAGGCAAGCCCGCTCACCTTCTGCTACATCTCCAAGTCATAGCAACATGAAGTGGGCCACGAATACCACCAGAC--TGTATTGCTGGGGTAGTAAAGATAGGAGGGGCCCAGGGGGCACCCCTGTGACAGCCTTGGCCGATGCTTTGCAATGGAACCTCCTGGCTCTGCAGGTTTGACTCTAGGCCGAAGAGTCACAGCAGCAGTTTCCATCAACTGAGGTGCTTCAGTGTCCGATCAGGCACCCTGCAAACACAGTCTGTTCCACCGCCC s panTro2.chr21 3583094 333 - 46489110 gtgtccgtttcggaggacacgggggtgaaggcacagctggaatgagagcGTGAAGCACTGGAGAGGCAAGCCCGCTCGCCTTCTGCTACATCTCCAAGTCATAGCAACATGAAGTGGGCCACGAATACCACCAGACTGTGTATTGCTGGGGTAGTAAAGATAGGAGGGGCCCAGGGGGCGCCCCTGTGACAGCCTTGGCCGATGCTTCGCAATGGAACCTCCTGGCTCTGCAGGTTTGGCTCTAGGCCGAAGAGTCACAGCAGCAGTTTCCATCAACTGAGGTGCTTCAGTGTCCGATCAGGCACCCTGCAAacacagtctgttccactgccc i panTro2.chr21 C 0 C 0 a score=44123.000000 s hg19.chr21_gl000210_random 26878 187 + 27682 CCAggcaggtgccagtgtccccattagcaaatggtgaagctgggtctcagagaggtcaagtaacctttctaaggtcagacagctaataattgacagaacctaaatttgacctgcaggggagccc-acttcttaacttctaggctaACCTGACTCATAAAAAGTACACTATTCTCTGTTTCTCTCTCTC s papHam1.Contig47359 0 185 + 286 CCaggcaggtgccagtg-ccccattagc-aatggtgaagctgggtctcagggaggtcaagtaacctttctaa-gtcagacagttaataatggacagagcctaaatttaacctgcagaggagcccaagttcttaacttctaggctaACCTGACTCATAAAAGGTACACTATTCTCTCTTCCTCTCCCTC i papHam1.Contig47359 N 0 C 0 s panTro2.chr21 3583427 187 - 46489110 cca-gcaggtgccagtgtccccattagcaaatggtgaagctgggtctcagagaggtcaagtaacctttctaaggtcagacagctaataattgacagaacccaaatttgacatgcaggggagcccaagttcttaacttctaggctaatctgACTCATAAAAAGTACACTATTCTCTGTTTCTCTCTCTC i panTro2.chr21 C 0 C 0 a score=9832.000000 s hg19.chr21_gl000210_random 27065 38 + 27682 TTTCCTTTTTCTTGCTGATT-----------TTATATAAAGGGCTGGCA s panTro2.chr21 3583614 38 - 46489110 TTTCCTTTTTCTTGCTGATT-----------TTACGTAAAGGGCTGGCA i panTro2.chr21 C 0 C 0 s papHam1.Contig47359 185 38 + 286 TTTCCTTTTTCTTGCTGATG-----------TTATGCAAAGGGCTGGCA i papHam1.Contig47359 C 0 C 0 s tarSyr1.scaffold_645 56841 37 + 98561 CTTCTTTCTTTTTGCTGATTATTTTTAAGTGCTATGC------------ i tarSyr1.scaffold_645 N 0 I 12 a score=15825.000000 s hg19.chr21_gl000210_random 27103 51 + 27682 TTCTGATTGTTC-TTTTTTCAGGTTTAATCCTTATTTTAATAAAGTTTTCAA s panTro2.chr21 3583652 51 - 46489110 TTCTGATTGTTC-TTTTTTCAGGTTTAATCCTTATTTTAATAAAGTTTTCAA i panTro2.chr21 C 0 C 0 s papHam1.Contig47359 223 51 + 286 TTCTGATTGTTA-TTTTTTCAGGTTTAATCCTTATTTTATTAAAGTTTTCAA i papHam1.Contig47359 C 0 N 0 s tarSyr1.scaffold_645 56890 32 + 98561 TTCTGGTCATTATTTTTTTCAGGTTTAATCTT-------------------- i tarSyr1.scaffold_645 I 12 N 0 a score=22382.000000 s hg19.chr21_gl000210_random 27154 256 + 27682 GCAAAAAAAAAAGGTACACTAGAGAGGTTCACCTAGGGACTAGTTTCACC--CAGGGTCATCATTCAGTTCAGCAGTGAGTGCTGAATGCATTTGCTCCAGCTCCCTCGATCCATCTCAGTTTGGCTTCTCACCATTCCCACCCcatcaccaatactaccaccaatacaactgtcactgttcccatcaccaccagcatcaccctcacgatcaccaccatcactaccatcactacaaccagtatcaccaccatcaccac s panTro2.chr21 3583703 257 - 46489110 GC-AAAAAAAAAGGTACACTAGAGAGGTTCACCTAGGGACTGGTTTCACCCACAGGGTCACCATTCAGTTCAGCAGTGAGTGCTGAATGCATTGGCTCCAGCTCCCTCGATCCATCTCAGTTTGGCTTCTCACCATTCCCACCCCATCACCAATACTACCACCAATACAACTGTCACTGTTCccatcaccaccagcatcaccctcacgatcaccaccatcactaccatcactacaaccactaccattaccatcaccac i panTro2.chr21 C 0 N 0