##maf version=1 scoring=autoMZ.v1 a score=48474.000000 s hg19.chr4_gl000194_random 0 477 + 191469 GATCCCTGCCCTAAAACTTTCCCCCCTCATGTCCAGCAAATGCTGCATGGAGCCCTGGAATTCTATGTGGAAAGCTAGGAAGGGGGAG--AGCTGAAATGA----AGATGTAATCACCCTTTCCAAAGAGGTCAGTCCGGTACTAAGCTGTGCTCCTGGGCAAGCTCTCCAGGCTGAGGGAACAGGAGCAGGGGTTATGTTGGGTGAAGGTGGAAGTGAGGGACCTCCCAGGAG---GTGTAGAATATTCCACTAGGGACACCTCATACCCTTCGAGGATTAGACCTTGAGGCCTGGAGATCCCCAGGCAATTAGTATTGAAGGTCGAAAGGCCAGTGACAGGAATAGGAAGGCCcac----------tgtg---tcattcacaaagcacttccaaacccatcatcacaggtgaccctcacaacaaccctgtga---gacctgcagggcaggGGCTCTCACAAAGGAGGAGTCAGGAATGTCAAG-ACTTTAACACCTTCTCC s ponAbe2.chr9 19019561 476 + 135191526 GATCCCTGCCCTAAAAGTTTTCCCTCTCATGTCCAGCAAATGCTGCACAGAGCCCTGGAATTCCATGTGGAAAGCTAGGAAGAGGGAG--GGCTGAAATGA----GGATGTAATCACCCTTTCCAAAGAGGTCAGTCCAGTACTACCCTGTACCTCTGGGCAAGCTCTCCAGGCTGAAGGAACAGGAGCAGGGGTTATGTTGGGTGAAGGTGGAAATGAGGGACCTCCCAGGAA---GTGTAGAATATTCCACTACGGACACCTCATACCCTTCCAGGATTAGACCTTGAGGCCTGGAGATCCCCAGGCAATTAGTATTGAAGGTCGAAAGGCCAATGACAGGAATAGGAAGGCCcac----------tgtg---tcattcacaaagcacttccaaacccatcatcacaggtgaccgtcacaacaacc-tgtga---gacctgcagggcaggGGCTCTCACAAAGGAGGTGTTGGGAATGTCAAG-ATTTTAACACCTTCTCC i ponAbe2.chr9 N 0 C 0 s dasNov2.scaffold_73692 6340 449 - 10472 -------------------TCCCCCCTCTTATCCACCCTAGACTGCTCTGGGATCCTGGATAGCACAGGCCACACTCAGGAAGGTGAGCAGGAAAGAATGACTAGAGATG-AATCACCCCT--------GGTGTCCCCA--------CGGCGCCTCCTGACAAGCTCTCCAAGCTGGGGAATCAGGAGACTGGGTTACATGTGGTAAGGGCAGGAGTAAAACACCTGCTAAGGGGCTGCATGTCACAGCCTGTTGGG------TGAGGCTTTTAGAGAAATAGATTCT--------AAGAGTTCCAAG-AATGAGGAAATGATGTCAAATGGTCACAGGAAACAAGGGAGAGGCTCATACATGTTTAATGTGCAATCTtttatcaaggactttcacactaattgtatcgtgtgatccctacaaatatcatgtaaattaaactgcag---aagagttattTCACAAGGGGAATCTCAGATTTCATGTAATTAAACTCTTTGTCC i dasNov2.scaffold_73692 N 0 N 0 a score=428659.000000 s hg19.chr4_gl000194_random 477 1652 + 191469 AAGTCAGGATCAGGAAATGCTGTCCCAGCCCTGACCTATATTCCCTATGCTTCCTCCCACAAAACAGCTTAGGGTGACTGCCAACTTGTGGGCAGAGACCCTCACTTTCCAATCCCCACAAGGGGCTGTGCAGTGGGGAGGATGAGGCCCCCTCCTCTGACTGTCTCCTCCAAGACCCTGTTTTCTGAGGAAGGTCACTCTGGGAACTGTTGGCCTCTGCAGATGGGGGCCTGGACCGTGTGGAAACACGACGTGAAGGTCACACCTGGCAGGCACCAGTGCTGGAGGGCAAACCTCACCTTTAAAAACTCACACtttttattttaaatttatttttatttttaatttatatgagtacatggtaggtgtatatatttatggggtacatgagatagtttgacacaggcatgcaatgtgtaataatcacatcagggtaaatggggcattcatcacctcaagcaAGGGAAATGCCAGATGTttataaaaccatcagatcacatgagaactcacttactatcatgagaacagcatgggggaaactgccgccatgattcagttacctctcactgggcctctcccatgacacatgaggattacggaaattacagttcaagatgagatttgggtggctacacagccaaaccatatcaCCTTATAAAATTAATAAAGTGGAAATAGCAGCGGGCCTGAGTCCTGGCCCCTGCCTTGTGATGCCCCCTCTTGAGGAGGGCCTGGCTTCTGTGCCATGCAGAAACTTTCCTGTGCTTCCTGTGGGCTTGGGGTGAGCCAGGTCCTCCTGGGGGAGCTGGGCACTTGTGGGACAGGAGGGTCACTGGCCTGGGGTGTCCATTTGCCTCCTTACCCCATCAACAAAACACCAGAGGAGCCAACTCAACAAACCTCAATGTATAGCCCTTCCTGGACCCTAGGTGTTCAGGGCCCCCTGAGCTGCCCTGGA-CAGAACACTGGGCAGTGGCCAGTGCTTCCCCAACAACTCCCCCATGCACAGATGCCTGGTGGACACACTTCCCTTAACCATGCTCAGCTGGAGCTCAGCCCCCATCCTAGTACCTCTGCCTTCTCCTCCAGGACATGAAAAGGAAACCCAACTCCAAACCCATGGAGAATCCTCATCTTGGGTGAGGCCCTGGCTGGGACTCAGCCCCTTGTCAGGCCCTCGAGGAGCTCCATCTTCCCCTGTTTCCCTGCCACATGGGACCCAGGGCCTGTGGGAAAGAGTTGAGGGTGTTGTCCACTCAGCAGGTACCGCATGATCTTTGGGAAGGATTTGTGTTATACCTGCTCCTGGTGGGATAGAAGGCTCCGGAGCTGGGGAGTATTTGGGCTGTAGAAAACTGAGAAGCCCCTGACCCATCATGCATCAGAGCCCACTCCCAAGATGTGGAGCCGTCAGCTGGAAGAGCTGGGCAGTGGCAGGGGACCCCGGACCGTGAGGCCTTCCTCCTTTCCATCAGGTGACCCTAATATGTGGCCTCAGCTCTAGGGAGGTGGGCCCTAGCTGGAGGCACTGCACAGCAGCATCCTGGGTAGAGGTGCCAGGAGGGCAGGCCTGCCTTTGAGGCTATGAGGAAGGGCTGAGGCAGGCAGTGGCCAGTGGAGGGAACGGGGTGGGTACCGAGGGACTACATGGC s panTro2.chr4_random 2722506 1650 + 6711082 AAGTCAGGATCAGGAAATGCTGTCCCAGCACTGACCTGTATTCCCTATGCTTCCTCCCACAAAACAGCTTAGGGTGACTGCCAACTTGTGGGCAGAGACCCTCACTT-CCAATCCCCACAAGGGGCTGTGCAGTGGGGAGGATGAGGCCCCCTCCTCTGACTGTCTCCTCCAAGACCCTGTTTTCTGAGGAAGGTCACTCTGGGAACTGTTGGCCTCTGCAGATGGGGGCCTAGACCATGTGGAAAGACGACGTGAAGGTCACACCTGGCAGGCACCAGCGCTGGAAGGCAAACCTCACCTTTAAATG-TCACAGttttt-ttaaaaatttatttttatttttaatttatatgagtacatggtaggtgtatatatttatggggtacatgagatagtttgacacaggcatacaatgtgtgataatcacatcagggtaaatggggcattcatcacctcaagcaAgggaaatgccagatgcttataaaaccatcagatcacatgagaactcacttactatcatgagaacagcatgggggaaactgccaccatgattcagttacctctcactgggccactcccatgacacatgaggattatggaaattacagttcaagatgagatttgggtggcaacacagccaaaccatatcaCCTTATAAAATGAATAATGTGGAAATAGCAGCAGGCCTGAGTCCTGACCCCTGCTGTGTGATGCCCCCTCTTGAGGAGGGCCTGGCTTCTGTGCCATGCAGAAACTTTCCTGTGCTTCCTGCTGACTTGGGGTGAGCCAGGTCTTCCTGGGGGAGCTGGGCACTTGTGGGACAGGAGAGTCCCTGGCCTGGGGTCTCCATTTGCCTCCTTATCCCATCAACAAAACACCAGAGGAGCCAACTCAACAAACCTCAATGCACGGCACTTCCTGGACCCTAGGTGCTCAGGGCCCCCTGAGCTGCCCTGGGGCAGAACACTTGGCAGTGGCCAGTGCTTCCCCAACAACTCCCCCATGCACAGATGCCTGGTGGACACACTTCCCTTAACCCTGCTCAGCTGGAGCTCAGCCCCCATCCTAGTACCTCTGCCTCCTCCTCCAGGGCAGGAAAAGGAAACCCAACTCCAAACCAATGGAGAATCCTCATCTTGGGTGAGGCCCTGGCTGGGACTCAGCCCCTTGTCAGGCCCTCGAGGAGCTCCATCTTCCCCTGTTTCCCTGCCCCATGGGACCCTGGGCCTCTGGGAAAGAGTTGAGAGTGTCATCCACTCAGCAGGTACCGCATGATCTTTGGGAAAGATTTGTGTTATACCTGCTCCTGGTGGGATAGGAGCCTCTGGAGCTGGGCAGTATTTGGGCTGTAGAAAACTGAGAAGCCCCTGACCCATCATGCATCAGAGCCCACTCCCAAGATGTGGAGCCATCAGCTGGAAGAGCTGGGCAGTGGCAGGGGACGCCAGACCCTGAGGCCTTCCTCCCTTCCATCAGGTGACCCTACCATGTGGCCTCAGCTCTAGGGAGATGGGCCCTAGCTGGAGGCACTGCACAGCAGCATCCTGGGTAAAGGTGCCAGGAGGGCAGGCCTGCCTTTGAGGCTGTGAGGCAGGACTGAGGCAGGCAGTGGCCAGTGGAGGGAACTGGGTGGGTGCTGAAGGACTACATGGC i panTro2.chr4_random N 0 C 0 s ponAbe2.chr9 19020037 1650 + 135191526 AAGTCAGGCTCAGGAAATGCTGTCCCAGCACTGACCTATATTCCCTATGCTTCCTCCCACAAAACAGCTTAGGGTGACTGCCAACTTGTGGGCAGAGACCCTCACTTTCCATTCCCCACGAGGGGCTGTGCAGTGGGGAGGACAAGGCCCCCTCCTCTGACTGTCTTCTCCAAGACCCTGTTTTCTGAGGAAGGTCACTCTGGGAACTATTGGCCTCTGCAGATGGGGGCCGGGACCATGTGGAAAGATGACGTGAAGGTCACACCTGGCAGGGACCAGCGCTGGAGGGCAAACCTCACCTTTAAAAACTCACACtttttattttaaatttatttttatttttaatttctatgagtacatagtaggtgtatatatttatggggtacatgagatagtttgacacaggcatgcaatgtgtaataatcccatcagggtaaatggggcattcatcacctcaagcgagggaaatgccagatgcttataaaaccatcagatcacatgagaactcacttactatcatgagaacagcatgggggaaactgccgccatgattcagttacctctcactgggtccctcccatgacacatgaggcttatggaaattacagttcaagatgaggtttgggtggcaacacagccaaaccatatcaCCTTATAAAATGAATAATGTGAAAATAGCAGTGGGCCTGAGGCCTGGCCCCTGCACTGTGATGCCCCCTCTTGGGGAGGGCCTGGCTTCTGTGCCATGCAGAAACTTCCCTGTGCTTCCTGTGGGCTTGGGGTGAGCCAGGTCCTCCTGGGGGAGCTGGGCAC-TGTGGGACAGGAGGGTCCCTGCCCTGGGGTCTCCATTTGCCTCCTTACCCCATCAATGAAACACCAGAGGGGCCAACACAACAAACCTCAATGCATGGCCCTTCCTGGATCAGAGGTGTGCAGGGCCCCCTGAGCTGCCCTGGGGCAGAACACTGGGCAGTGGCCAGTGCTTCCTCAACAACTCCCCCATGCACAGATGCCTGGTGGACACACTTCCTTTAACCCTGCTCAGCTGGAGCTCAGCCCTCCTCCTAGTACCTCTGCCTCCTCCTCCAGGGCAGGAAAAGAAAACCCAACTCCAAACCCATGGAGAATCCCCATCTTGGGTGAGGCCCTGGCTGAGACTCAGCCTCTTGTCAGCCCCTCGAGGAGCTCCATCTTTCCCTGTTTCCCTGCCCCATGGGACCCTGGGCCTCTGGGAAACAGTTGAGAGTGTCGTCCGCTCAGCAGGTACCGCATGATCTTTGGGAAGGATTTGTGTTATACCTGCTCCTGGTGGGATAGGAGCCTCTGGAGCTGGGCAGTATTTGGGCTGCAGAAAACTGAGAAGCCCCTGACCCATCATGCATCAGAGCCCACCCTCTAGATGTGGAGCCGTCAGCTGGAAGAGCTGGGCAGTGGTAGGGGACCCGTGACCCTGAGGCCTTCCTCCCTTCCATCAGGTGACCCTACCATGTGGCCTCAGCTCTAGGGAGGTGGGCCCTAGCTGGAGGCACTGCACAGCAGCATCCTGGGTAGAGGTGCCAGGAGGGCAGGCCTGCC--TGAGGCTGTGAGGCAGGGCTGAGGCAGGCAGTGGCCAGTGGAGGGAATGGGGTGGGTGCTGAGGGGCTACATGGC i ponAbe2.chr9 C 0 C 0 a score=27911.000000 s hg19.chr4_gl000194_random 2129 59 + 191469 CATCTCCTGGACATGGGGTCTGGCTGGGGGACATGAGATGGGCAGACACTGCCATCTTG s panTro2.chr4_random 2724156 59 + 6711082 CATCTCCTGGACATGGGGTCTGGCTAGGGGACATGGGATGGGCAGACACTGCCATCTTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr9 19021687 59 + 135191526 CATCTCCTAGACATGGGGTCGGGCTGGGGGACATGGGATGGGCAGACACTGCCATCTAG i ponAbe2.chr9 C 0 C 0 s calJac1.Contig13935 19423 59 + 21866 CATCTCTTGGATGTGAGGTCAGGTTGGGGGACACGTGATGGGCAGACACAGCCATCTTG i calJac1.Contig13935 N 0 I 145 a score=26655.000000 s hg19.chr4_gl000194_random 2188 108 + 191469 ATTTCATTGGCCCATCTGTGGGCT-----GGGAGGCCAGCTGGCGGTGTGGCCAGCTGGGAGGTAGGAGGACTCTTGGGGAAGGGAGAGTCACCTGCATGAACTCAGGGCTAG s panTro2.chr4_random 2724215 113 + 6711082 ACTTCATTGGCCCATCTGTGGGCTGGGGGGGGGGGGCAGGTGGGAGTGTGGCCAGCTGGGAGGTAGGAGGACTCTTGGGGAAGTGAGAGTCACCTGCATGAACTCAGGGCTAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr9 19021746 108 + 135191526 ACTTCATTGGCCCATCTGTGGGCT-----GGGAGGGCAGCTGGGAATGTGGCCAGCTGGGAAGTAGGAGGACTCTTGGGGAAGTGACAGTCACCTGCATGAACTCAGGGCTAG i ponAbe2.chr9 C 0 C 0 e calJac1.Contig13935 19482 145 + 21866 I a score=12335.000000 s hg19.chr4_gl000194_random 2296 48 + 191469 AGGGCTGTGGCTCTGGGACACACAGCGTGGCCAGGGGGAGGCTGCAGC s ponAbe2.chr9 19021854 48 + 135191526 AGGGCTGTGGCTCTGGAACACACAGGGTGGCCAGGGGGAGGCTGCAGT i ponAbe2.chr9 C 0 C 0 s panTro2.chr4_random 2724328 48 + 6711082 AGGGCTGTGGCTCTGGGACACACAGGGTGGCCAGGGGGAGGCTGCAGC i panTro2.chr4_random C 0 C 0 s gasAcu1.chrUn 27595238 37 + 62550211 AGCGATGTGGTGCAACGAGAGACAACGCGGAC--------GCCGT--- i gasAcu1.chrUn N 0 C 0 e calJac1.Contig13935 19482 145 + 21866 I a score=30194.000000 s hg19.chr4_gl000194_random 2344 83 + 191469 GCCCTCTGCTGTTGGGAATGAAAGGTGTCTGCCTTGAAGTGAAAGGGTCCCTGTTCAGCTCTGGGT-------CCCTGTGGGACCCTCAG s panTro2.chr4_random 2724376 83 + 6711082 ACCCTCTGCTGTTGGGAATGAAAGGTGTCCGCCTTGAAGTGAAAGGGTCCCTGCTCAGCTATGGGC-------CCCTCTGGGACCCTCAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr9 19021902 83 + 135191526 GCCCTCTGCTGTTGGGGATGAAAGGTGTCTGCCTTGAAGTGAAAGGGTCCCTGTTCAGCTCTGGGC-------TCCTGTGGGACCCTCAG i ponAbe2.chr9 C 0 C 0 s calJac1.Contig13935 19627 77 + 21866 GCCCTCTGCTGTTGGGGATGAAAGGCGTCTGACCTGACATGAGGGGGTCCCTGCCCAGACCCAGGC-------TGCTGTGGGAC------ i calJac1.Contig13935 I 145 N 0 s gasAcu1.chrUn 27595275 75 + 62550211 GCGCGTTACTGGTGTAACGGGCTGCTGCTCACC---AGGTG---------CTGCTTCAGTTTGGGCATCATCTTCCTGAGGAG---GCGG i gasAcu1.chrUn C 0 I 1 a score=116244.000000 s hg19.chr4_gl000194_random 2427 282 + 191469 CAGGGATGTCCTGAAGGCTCCTAACAAGCTGGAAAGCAAGGATGGTGCCTTGCCTGGAA----GTCAG--GATCGCCCAGCCAGGGTGGCCATCCCATGGCCTGGC-TGTGTGAGGCCCTGGGGGTAGC---------TGTCCGCCTACCCTGCAGGGAGTGCCCCTCCTCGGCCATCAGCTGATCCAGTGCCCAGAAGGTGTCTTCCTCTGGCAGATACAGGAGGAGGATGGCAG-TTAGGCAGCTCATGTCCCTGTGGTAGCCCACCTCCTGCAAGAGC------CAGAGTC---ACCATGGAAGC s ponAbe2.chr9 19021985 282 + 135191526 CAGGGATGCCCTGAAGCCTCCTAAAAAGCTGGAATACAAGGAAGGTGCCTTGCCTGGAT----GTCAG--GATCACCCAGCCAGGGTGGCCTTCCCATGACCTGGC-TGTGTGTGGCCCTGGGGGTTGC---------TGTCCACCTACCCTGCAGGGAGTGCCTCTCCTCGGCCATTAGCCGATCCAGTGCCCAGAAGGTGTCTTCCTCTGGCAGATACAGGAGGAGGATGGCAG-TTAGGCAGCTCATGTCCCTGTGGTAGCCCACCTCCTGCAAGAGC------CAGAGTC---ACCATGGAAGC i ponAbe2.chr9 C 0 C 0 s panTro2.chr4_random 2724459 282 + 6711082 CAGGGATGTCCTGAAGGCTCCTAACAAGCTGGAAAGCAAGGAAGGTGCCTTGCCTGGAA----GTCAG--GATCGCCCAGCCAGGGTGGCCGTCCCATGGCCTGGC-TGTGTGAGGCCCTGGGGGTAGC---------TGTCCACCTACCCTGCAGGGAGTGCCTCTCCTCGGCCATCCGCTGATCCAGTGCCCAGAAGTTGTCTTCCTCTGGCAGATACAGGAGGAGGATGGCAGTTTAGGCAGCTCATGTCCCTGTAGTAGCCCACCTCCCGCAATA-C------CAGAGTC---ACCATGGAAGC i panTro2.chr4_random C 0 M 1443 s fr2.chrUn 61878409 282 + 400509343 CATGGTGCTCCTGGAAGCGGATCAGCTTTGGGAAACCAGGCACGAAGAACCCTGAAGAA----GTAACCAGAATCCCGGGCTGAGAAGCAGCTCCTCTGGGCCTGC-TGAACGAAAGCGTGGTCGGACG---------T-----CTTACCGTGCATGGCGTGCTTCTGCCCGGACAGCAGTTTGACCAGAGCCCAGAAGGCGTCTTCTTCGTTCATATAGATGAGCAGCAGGGCCG-TGATCTGACTCATCCCCTGACAGtagcccacctcctgcagc--cag-agtCAGACTCGGTGCTACAAT--- i fr2.chrUn N 0 C 0 s tetNig2.chr19 682286 254 + 7272499 ------------------------------GGAAGCCAGGGACGAAGAACCCTGAGGAA----GAAAGCAGAAGGCCGGGCTGAGAGGCAGCTGCTCCGGTCCGGC-TGAGCTCCGGCGCGCTGGCCTG---------T-----CCTACCGTGCATGGCGTGCTTCTGTCCAGACAGCAGCTTGACCAGAGCCCAGAAGGCGTCCTCTTCGTTCATGTAGATGAGCAGCAGGGCTG-TGATCTGGCTCATTCCCTGACAGTAgcccacctcctgcagcagcagcagccagactcaG-GCTCTGGC--- i tetNig2.chr19 N 0 C 0 s gasAcu1.chrUn 27595351 274 + 62550211 CGTGGTGCTCCTGGAAGCGCATCAGCTTTGGGAAGCCGGGGATGAAGAAGCCTAGGGGACCCCGTGAG-GGACGCTTGAGTTTAGTCGGTGGTCCGCCCTCATGGCGTAAGCGGCGTTTTGCTCACGCGCAGGTCCGTT-----CTTACCGTGCATGGCGTGCTTCGGCCCAGACAGCAGCTTGACCAGAGCCCAGAAGGCGTCCTCCTCGTTCATGTAGATGAGCAGCAGAGCCG-TGATCTGACTCATGCCCTGGCAGTAGCCCACCTCCTGC-----CAA-CGC--------------------- i gasAcu1.chrUn I 1 N 0 a score=11989.000000 s hg19.chr4_gl000194_random 2709 77 + 191469 ATGTCACCTGAGAGGGATGAGGCC--------ATCTGGGAGGACTCG------TGTCACTGGAGAGGACAGAGGTCACCTGGGAGACCTCC s ponAbe2.chr9 19022267 77 + 135191526 ATGTCACCTGAGAGGGCTGAGGCC--------ATCTGGGAGGACTCA------TGTCACTGGAGAGGACAGAGGTCACCTGGGAGACCTCC i ponAbe2.chr9 C 0 C 0 s fr2.chrUn 61878691 91 + 400509343 CTAGACCCTCAGACAGATGCTGCACCCCGACCGGGCAGAGGAACTCACCGTGTTGTAGATGGAGTAGGCCGTGAGGACGTGGAAGAGCGCC i fr2.chrUn C 0 N 0 s tetNig2.chr19 682540 82 + 7272499 CCAGCCCCGCAGGCAGACGCTGCA---------GCGGGAGGAACTCACCGTGTTGTAGACGGAGTAGGCCGTCAGCACGTGGAAGAGCGCC i tetNig2.chr19 C 0 N 0 e panTro2.chr4_random 2724741 1443 + 6711082 M a score=73659.000000 s hg19.chr4_gl000194_random 2786 855 + 191469 CTCAGGCCCTAGGGGATTTAGGGCGCAGACTCTGCACCCCTCCCCTGACCCTGGACATGAGGGCTAAGCAAGTCCCCCACAACTCAGTTAAAAAGGGACCTGGAGGGACTTCTGCAGTGAGTGTCCAACCTCACATGGTCTGAAGGGGCAGAGGCAAGGGTCATTCACATCCCCTATCATGGGCCAGGCTGGAAAGGCCAGTGTGCCAGGCCTGGGGAAGCACCTGTGAACTGCACCCACCACAAGGGCAGGCAGTGGGCCACTGATCACCACACAATGGATCGTGTGATGGCCCAGGGGCTGCCTGCCAGGCACAGGAGGGCAGCTGGGTCCAGACCCTATGTGAGCAGCCCGTGGAGTGATCTCAGCAGCTCTCCCTGCCTGGAATGGTCTGGGAAGTGGGGGCCAAGCAGGAACAGCCACCTGGGTGACCTCCTCCCTGTCTACTGTTCTCTTACGGGGTTAAGGCAAAGGGGAAATTGGATCCCTGCCAGGTTTCCAATAAAGAGGCTTCCTCAGGATTCAAACTCATTTCATGAGAAGAGCCTGGCCCCATCAGGCACCTCAGCAACTTGTCAAACATGTCTCCTGCAAGGACTATCCTGTGTGCAACACTGCTAAGCTCCTTGTTTTGGGCAGCACCAGGAGGGGAGGGTCATTTCTTCTTCTGAGACATGGTGGTTGGGTCCAGGTGACATCCACAGTCTGGGCCCTGACCCCTTTCACTCTCAGCGGGACCCCTTGAGACACCAGCTTCCCTTCCTTGCTCGGGTGTCCACACCAGCAGTTCTACCTACTACATTATTACAGCCAGATCAGGATCAATGTCCTCTCTCTGGAATAAATGCAGTGACC s ponAbe2.chr9 19022344 855 + 135191526 CTCAGGCCCTAGGGGATTTAGGGTGCAGACTCTGCACCCCTCCCCTGACCCTGGGCATGAGGACTAAGCAAGTCCCCCAGAACTCAGTTGAAAAGGGACCTGGAGGGACTTCTGCAGTGAGTGTCCATACTCACATGGTCCAAAGGGGCATGGGCAAGGATCATTCACGTCCCCTACCCTGGGCCAGGCTGGGAAGGCCAGTGTGCCAGGCCTGGGGCAGCACCTGTGAACTGCACCCACCACAAGGGCAGGCAGTGGGCCACTGATCACCACACAATGGGTCCTGTGATGGCCCAGGGGCTGCCTGACAGGCACAGGAGGGTGGCTGGGTCCAGACCCCATGTGAGCAGCCCATGGAGTGATCTCAGTGGCTCTCCCTGCCTGGAATGGTCTGGGAAGTGAGGGCCAAGCAGGAACAGCCACCTGGGTGACCTCTTCCCTGTCTACTGTGCTCCTACGTGGTTAAGGCAAAGGGGAAATTGGATCCCTGACAGGTTTCCAATAAAAAGGCTTCCTCAGGATGCAAACTCATTTCATGAAAAGAGCCTGTCCCCATCAGGCACCTCAGCAACTTGTCAAACATGTCTCCTGTAAGGACTATCCTGTGTGCAACACTGCTAAGCTCCTTGTTTGGGGCAACACCAGGAGGGGAGGGTCATTTCTTCTTCTGAGACATGGTGGTTGAGTCCAGGTGACATCAACAGTCTGGGCCTTGACCCCTTTCCATCTCAGCAGGACCCCTTGAAACACCAGCTTCCCTTCCTTGATTGGGTGTCCATGCCAGCAGTTCTACCTACTACGTTATTACAGCCAGATCAGGATAAATGTCCTCTCTCTGGAATAAATGCAATGATC i ponAbe2.chr9 C 0 C 0 e panTro2.chr4_random 2724741 1443 + 6711082 M a score=39221.000000 s hg19.chr4_gl000194_random 3641 493 + 191469 ACTGTTCTTTGAGCATTATTTATCTTAAATTATTGTTTTAATTAGAAATGTA----TTTCACTTATATT-------------AGCCAAATTTCCTTTCAA--TGTAACCAAATTTCT-TTTAAGTGAAAATTAAATATTTACCTTCTGCTATCAAGCATTCTATGTACACAAAATGTT------TATTTTTTTCAACTTTAGAAAAAAATTGAAAATGTCTACATGCTACTAATCTAAAAATACAGGCTCTGGGTTTATATGGTGTTTACCTTTCTTCCAAATTTTAAGGAATAGATATTTAAATGGCATCTACTTTGTTTTAAAATACAT----AAAATGTTTTAAGCTTTTGACCTCA---------AAATTTACAGTAGCAAAGCTACTCCGTAATGA-ATAAACCACAGAATCAAAACAAAGAAAGATTCCACAGACCAGTCTA--ACCAACAATACAATTA---------------TAAACTAGTTGTTCAAATATCAAAAACCA----ATTTCAATGACAAATGAATGGTATGAAAACCCCGCAAATG s ponAbe2.chr9 19023199 492 + 135191526 ACTGTTCTTTGAGCATTATTTATCTTAAATTATTGTTTTAATTAGAAATATA----TCTAACTTATATT-------------AGCCAAATTTCCTTTCAA--TGTAACCAAATTTCT-TTTAAGTGAAAATTAAATATTTACCTTCTGTTATCAAGCATTCTATGAATACAAAATATT------TATTGTTTTCAACTTTAG-AAGAAATTGAAAATGTCTACATGCTACTAATCTAAAAATACAGGCTCTAGGTTTATATGGTGTTAACCTTTCTTCCAAAATTTAAGGAATAGATATTTAAATGCCATCCACTTTGTTTTAAAATACAT----AAAAGGTTTTAAGGTTTTGACCTCA---------AAATTTACAGTAGCACAGCTACTCCGTAATGA-ATAAACCACAGAATAAAGACAAAGAAAGATTCTACAGACCAGTCTA--ACCAACAATACAATTA---------------TAAACTAGTGGTTCAAATAACGAAAACCA----ATTTCAATGACAAATGCATGGTATGAAAACCCCGCAAAGG i ponAbe2.chr9 C 0 C 0 s xenTro2.scaffold_3 3272683 497 + 7514772 ACCTTTCTATGAGCATTGTATATTTCAGATTAATTGTAAAAATACAAGTATAAACTCTGCATTTATATTATCTTCTAACTCCAGCTACATGACCATTTAAACTGCAGCCTCACTTGTGCTTGTGTGATGTCTGCAAATCAA-----TATCATAACGCTTATTAAATGTATATAGTGCTATGGGCTGGCTTTTGTCACTC----GGTCAGGTGGGCACGTGCACAAGC----GATCTGAAA----------TGAACATGTATTG--------ATCCTTCCAAATGTAGGAGATTAAAT------------TCAGCTCTGTATTAATCTGTCTTTAACAGATGTTCTAAACTTGTATCTGTACCAGTTGTTACATTTGCAGTTGT----TTATTTCGTATTCATAGGAATTTCAGGATGCAGA-----AAGGATT-----GATTAGTCTGCCACCAGAAGGAAATTTACATCTCCAAAAGCTGTAGATTGTACGTAGAAGTGTTAAAACTAACTGTATTATAGAGATACAAGAATCATTCTAGAATTCAGCCACTG i xenTro2.scaffold_3 N 0 N 0 e panTro2.chr4_random 2724741 1443 + 6711082 M a score=52126.000000 s hg19.chr4_gl000194_random 4134 608 + 191469 TCAAGTAGAATATATTATACTTGAATGAAATTATGAGTTGAGAGTAGGAAATCTATGTTTAACCAAGCAAATTAAATAATGTTTATGAGGAAATTAT-CTGCTAATGTTTTATTATTTGGCAAGCTATTCAGTGGAACACAAAGATATTCTTAATGAAGTCGAAAATATATTTTAAAATGTTACTGAAGTGGATTAAAAAATAATGAGGACATGAATAACTTTTAAAAGTATTCTGGGATAAAGAGAGAAAAATAAATTTAGATTTCATACATACATAAAATATATTTTAAAAGTTGTGTTTTCTGGTTGCTCAAATAAAAGGAGCAGATATTTAAATTCCATGCCTTTCATTTTAAAGTTTAGGAAATGCTTATAGCTTTCCACACTGACATTTATACTGACACAGTTAATCTAATCGAGTGATAACAAAATCAAAACAAGCAGAATTCTCTTGAGCAATCTATTTTCTTGATTTTTAAAAGTCAATGTACTCTCAAAGAAACAAAACTATTATTCGTGGATTCTGTTATTTGAAAACATTTACTGATCATTTACCTTACACCAAATGATCTCCAGCTCGTGGAAAAATATGTAAAGTTGCCCAGCTG s ponAbe2.chr9 19023691 603 + 135191526 TCAAGTCAAATATATTATACTTGAACGAAATTATGAGTTGAGAGTAGGAAATCTATGTTTAACCAAACAAATTAAATAATGTTTATGAGGAAATTATACTGCTAATGTTTTATTATTTGGCAAGCTATTCAGTGGAACACAAAGATATTCTTAATGAAGTCAAAAATATATTTTAAAATGTTACTGAAGTGGATTAAAAAATAATGAGGACATGAATAACTTTTAAAAGTATTCAGGGATGAAGAGAGAAAAATAA------ATTTCATACATACATAAAATATATTTAAAAAGTTGTGTTTTTTGGTTGCTCGAATAAAGGGAGAAGATATTTAAATTCCATGCCTTTCATTTTAAAGTTTAGAAAATGCTTATAGCTTTCCACACTGACATTTATACTAACACAGTTAATCTAATCGAGTGATAACAAAATCAAAACAAGCAGAATTCTCTTGACCAATCTATTTTCTTGATTTTTAAAAGTAAATGTACTCTCAAAGAAACAAAACTATTATTCGTGGATTCTGTTATTTGAAAATATTTACTGATCATTTACCTTACACCAAGTGATCTCCAGCTCATGGAAAAATATGTAAAGTTGCCCAGCTT i ponAbe2.chr9 C 0 C 0 e panTro2.chr4_random 2724741 1443 + 6711082 M a score=251434.000000 s hg19.chr4_gl000194_random 4742 984 + 191469 CATTAAGCTTAAACTCTtctgaaggagaaaagaagcaatggagtagggacattaaagcaggagtgtggtgatatggctgagacttctacttgcacactgtggtagctgtgtggagaatggattgaaaaaagggcaatgacagaagcTTAAATTAGTATCAAATATGGCAATCCTGTAAATTTAGGTGTCCTTGAAATAAGAATGTATAATAGTTCTCATTATTTCCCCAAGAAATCTCTGCATTTGGCCTTGTGAGGGAAGCGCTATAGTTACCAAGTGGTGGGGGTGGGAAGGTGAATTTGAAACAACATTTGGAATTACTACACTTTAAAGGTAAAGCTGGCAGGAATTCCATACACGTCAGATCTGAAAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtttgtgtgtgtgtgAAGCagggagagagagcaagagtgaaagtgagcaagagagagaggagagagagagagagaATCAGACAGATACAGAAAAAGATTGACAGAGCTGCagagacagaattaaaaggggacaccaagaatattgagctgagaaactataaaatgggagtagccgttaaacagaatggggaagagcaaatttggggagtttcagtggctcaatatagacatattaattttgagattcctaactgacatccacgtggataagtcagggagtgttgggtgtagtgtccagtgtttaggtgtaataagaaatatcaggaaattaatgacacaaacattagtaagaaagcaaagataagaa---------gtcgaagtcctgagcctaatggtcctctaatatttaaaaaatagaaaagatgaaacctgcaataaaggactaggggtaattatccaaaacatggtgggggggaagtaggttaagtattctggaattctat-aaaaaagttttacaaagagaaggtggagatcaactgtgtgaaatgctgctgatatataaattaagacgaag s ponAbe2.chr9 19024294 989 + 135191526 CATTAAGCTTAAACTCTTCCGAAGGAGAAAAGAAGCAATGGAGTAGGGACATTAAAGCAGGAGTGTGGTGATATGGCTGAGACTTCTACTCGTACACTGTGGTAGCTGTGTGGAGAATGGATTGAAAAAAGGGCAATGACAAAAGCTTAAATTAGTATCAAATATGGCAATCCTATAATTTTAAGTGTCCTTGAAATAAGAATGTATAATAGTTCTCATTATTTCCCCAAGAAATCTCTGCACTTGGCCTTGTGAGGGAAGCGCTATAGTTACCAAGTGGTGGCGGTGGGAAGGTGAATTTGAAACAACATTTGGAATTACTACGCTTTAAAGGTAAAGCTGGCAGGAATTCCATACACATCAGATCTGAAAA----TAtgtgtgggtgtgtatgtgtgtgtgtgtgtctgtgtgtgtttgtgtgtgtgtgAAGCagggagagagagcaagagtgagagtgagcaagagagagaggagagagagggagagaatcagacagatacagaaagagagtgacagagCTACagaaacagaattaaaaggggacaccaagaatattgagctgagaaactataaaatgggagttgccattaaacagaatggggaagagcaaatttggggagtttcagtggctccatatagacatattaattttgagattcctaactgacatccatgtggataagtcagggagtgttgggtgtagtgtccagtgtttaggtgtaatatgaaatatcaggaaattaatgacacaaaaattagtaagaaagcaaagataagaaagataagaagtcaaagtcctgagcctaatggtcctctaacatttaaaaaattgtaaagatgaaacctgcaaaaaaggactaggggtaattatcaaaaacgtggt-gggggaaagtaggttaagtgttctggaattctataaaaaaagttttacaaagagaaggtggagatcaactgtgtgaaatgctgctgatatataaattaagacaaag i ponAbe2.chr9 C 0 N 0 s panTro2.chr4_random 2726186 985 + 6711082 CATTAAGGTTAAACTCTTGTGAAGGAGAGTAGATGCAATGGAGTGGGGACATTAAAGCAGGAGTTTGGTGATATGGCTGAGACTTTTACTTGCACATTGTGGTAGCTGTGTGGAGACTGGATTGAAAAAAGGGCAATGACAGAAGCTTAAATTAGTATCAAATATGGCAATCCTATAATTTTAAGGGTCCTTGAAATAAGAGTGTATAATAGTTCTCATTATTTCCCCAAGAAATCTGTGCACTTGGCCTTGCGAGGAAAGCGCTATAGTTACCAAGTGGTGGGGGTGGGAAGGTGAATTTTCAACAACATTTGGAATTACTACACTTTAAAGGTAAAGCTGGCAGGAATTCCATACACATCAGATCTGAAAA--------tgtgtgcgtgtgtgtgtgtctgtctgtctgtgtgtgtttgtgtgtgtgtgAAGCagggaaagagagcaagagtgagagtgagcaagagagagaggagagagagggagagaATCAGACAGATACAGGAAGAGAGTGACAGAGCTACagagacagaattaaaagaggacaccaagaatattgagctgagaaactataaaatgggagttgccattaaacagaatggggaagagcaaattttgggagtttcagtggctccatacagacatattaattttgagattcttaactgacatccacgtggaaaagtcagggagtgttgggtgtagtgtccagtgtttaggtgtaatatgaaatatcaggaaattaatgacacaaaaattagtaagaaagcaaagataagaaagataagacgtcaaagtcctgagcctaatggtcctctaacatttaaaaaatagtaaagatgaaacctgcaaaaaaggactaggggtaattatcaaaaacgtggtcgggggaaagtaagttaagtgttctggaattctat-aaaaaagttttacaaagagaaggtggagatcgactgtgtgaaatgctgctgatatataaattaagatgaag i panTro2.chr4_random M 1443 C 0 a score=30180.000000 s hg19.chr4_gl000194_random 5726 443 + 191469 gccgaggagttatggttcaatttatagtttaacaatatggatagcacttatgttttgatacgagcagcttcgttggagtgagtaggtgagaaatcatattggagtggTTGCTGAAATGAAAGTCTGATCTCTGGATTCTTAAGGAAAAATTTTATTGGACTGCAGAGACATAAATTGGATTTTTAATTCTGGAGTCAGGATGTGCTCAGTAAACATGTGCCCATTAATGCCTCCTCGCA--TTTTTTTAGCTCGGTATTCTGTTATCTTTTAATAATATAATAATGACTTGCAAAACCTACACCCATTTtgcagcaa---accgtgacacatgtatacctgtgtaacaaacctgcatgttctgcacatttatcccagaacttaaagtataTATATACACTTtatatatatatattctctctctctctctctctctatatatatatata s panTro2.chr4_random 2727171 385 + 6711082 gccgagaagttatggttcaatttataatttaacaatatggatagcacttatattttgatatgagcagc-tcgttggaatgagtaggtgagaaatcatattggagtggTTGCTGAGATGAAAGTCTGATCCCTGGATTCTTAAGGAAAAATTTTATTGGACTGCAGAGGCATAAATTGGATTTTTAATTCTGGAGTCAGGATGTGCTCAGTAAACATGTGCCCATCAATGCCTCCTCGCATTTTTTTTTAGCTAGGTATTCTGTTATCTTTTAATAATATAATAATTACCTGCAAAACCTACACCCATTTtgcagcaaaccaccatgacacatgtatacctgtgtaaccaacctgcatgttctgcacatttatcccagaacttaaag-------------------------------------------------------------- i panTro2.chr4_random C 0 C 0 a score=2148.000000 s hg19.chr4_gl000194_random 6169 45 + 191469 tagagagagagagagagagagagagacagacagacagacagacag s panTro2.chr4_random 2727556 17 + 6711082 --gagagagagagagag--------------------------ag i panTro2.chr4_random C 0 C 0 s gorGor1.Supercontig_0000130 82435 42 - 116048 tagagagagagagagagagagagagagagagaaagggggggg--- i gorGor1.Supercontig_0000130 N 0 I 705 a score=54558.000000 s hg19.chr4_gl000194_random 6214 724 + 191469 agagagagagacagaAAACCCAgccaagtgcggtggctcatgattgtaatcccagggctttgggaggctgagacaggtcgaccatctgaggtcaggattgagaacagcctggccaacatggtgaaaccctgtctttactaaacatacaaaaattagctgggtgtggtggggggcacctatagtcccagctacttgagaggccaaagcaggagaatcacttgaacctggaaggcaaagactgcagtgagctaagatcacgccacagcactacagcctgggtgacggggtgagactgcctcaaaa------acaaaaacaaaaa---------aCCCTTTTAATtgacaaattttacaaagactgatactagaggttgttggacaggccgttgtcccacataatatcttaagagttgccgatgcacaagtaagatggtaaaatgcctttgaaaaactgaccatacctgctatacttaaatattcagatacaaaactcccagaaattccatcttgtcatttatttccacaagaaataacaagagacctgtattaaaatatccatttctattaaaaatactcaaactaggtttcttcaAATTTTTGTATTAGTAGCTCTTGTTTTCAGCAGTACAACTTCTACtatatatgtgtatatatatttaatatatatatgcacacatacatatattatatatgtatatatatt----agatatatatgtatattatacatatacatatatg s panTro2.chr4_random 2727573 715 + 6711082 agtgagagagaaagaA-----agccaagtgcggtggcccatgactgtaatcccagcgctttaggaggctgagacaggtggaccatctgaggtcaggattgagaacagcttggccaacatggtgaaaccctgtctttactaaacatacaaaaattagctgggtgtggtggggggcacctgtagtcccagctacttgagaggccaaggcaggagaatcacctgaacctggaaggcagagactgcagtgagctaagatcacgccacagcactgcagcctgggtgacagtgtgagacagtttcaaaaagaaagacaaaaacaaaaactaaaaaacacccatttaattgacaaactttacaaagactgatactagaggttgttggagaggacgttgttccac---atatcttatgagttgccgatggacaagtaagatggtaaaatgcctttgaaaaactgaccatacctgctatacttaaatattcagatatcaaacacccagaaattccatcttgtcatttatttccacaagaaaaaACAAGAGACCTGTATTAAAATATCGATTTCCATTAAAAATAATCACACTAGGTTTCCTGAAATTTTTTTATTGGTAGCTCTTGTTTTCAGCAGTACAACTTCCAatatatatgtgtatatatatttaatatatg-------------------tatatatgtatatatattagaaagatatatatgtatattatacatatgcatatat- i panTro2.chr4_random C 0 C 0 e gorGor1.Supercontig_0000130 82477 705 - 116048 I a score=25651.000000 s hg19.chr4_gl000194_random 6938 162 + 191469 tatatattatgtatgtatgt-atat--atgcacatatgtgtatgttatatagatacaaatatgtatatatgttatatatatacacaaatgtatatatgttatatatatacacaaatgtatatatgttatataaatacacaaatgtatatatgtaatatatataca s panTro2.chr4_random 2728288 154 + 6711082 tatatattatgtatatatgt-atatacatacacacgtgtgtatgtaatatacatac--acacgtgtgtatgtaatatacataCACACGTGTGTATAGGTAATATACATACACACGTGTGTATAGGTAatatacatacacacgtgtgtataggtaata-------- i panTro2.chr4_random C 0 I 1633 s gorGor1.Supercontig_0000130 83182 159 - 116048 tatatattatgtatatatgtgatat--atacacacgtatatatgtgatatanacacacacacgtatatatgtgatatatacacacacatgtatatatgtgatatatacacacacatatatatgtg----atatatacacacatgtatatatgtgatatatacaca i gorGor1.Supercontig_0000130 I 705 I 15770 a score=51420.000000 s hg19.chr4_gl000194_random 7100 627 + 191469 tattatatgtatatatgtatatata----atatatgtatatatatTaggcagagttttgctcttgttgcccaggctggagtgcaatggtgcaatctcagctcactgccacctccacctcctgggttcaagcgattgtcctgcctctgtctcccaagtagctggga-tacaggcatgtgccaccaccctcggctaattttgtatttttagtagagattgggtttcaccgtgttggtcaggctggtctcaaactcctgacctcaggtgatccacttgcctcggcctcccaaagtgctgggattacaggtgtga-ccactgtgctcggccTATTTTGTATTTTTTAATCTACAAAACTCTAAGAACACATATTTTAAATAAATTtgtacattcagtgcctagaacaaaaccagcattttgtagattccaaagaattatttgttgtataaatgaTGAATAACTTAAATAAGTTATTATTTATAACATCTATATACAAACAATATATTACCTGAGAATACAGTGATAACATTTGTTATGTATAAAATGATTGCAATCTCAGTTAAAAAATATTTTTTGCATGAGTTATTATCATATGCAGATGCTCACATTGTTTTGTTTAGATGAAAATGTTTGTAA s panTro2.chr4_random 2730075 627 + 6711082 caatatatgtatatatgtgtatatacacaatatatgtatatatatTaggcagaattttgctcttgttgcccaggctggagcgcaatggtgcaatctcggctcactgccacctccacctcccaggttcaagcgattgtcctgcctctgcctcccgagtagctgcgactacaggcttgtgccaccacccttggctaattttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggtgtgagccactgtgcccggccTATTTTGTATTTTTTAATCTACCACACTCTAAGAACACATATTTTAAATCAATTTGTACATTCAGGGACTAGAACAAAACCAGCATTTTGTAGATTCCAAAGAATTATTTGTTGTATAAATGATAAATAACTTAA----GTTATTATTTATAACATCTATATACAAACAATATATTACCTGAGAATACAGTGATAACATTTGTTATGTATAAAATGATTTCAATCTCAGTTAAAAA-TATTTTT-GCATGAGTTATTGTCATATGCAGATGCTCACATTGTTTTGTTTAGATGAAAATGTTTGCAA i panTro2.chr4_random I 1633 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=58277.000000 s hg19.chr4_gl000194_random 7727 227 + 191469 CTACTATGCACATTTTTGTTACTTAAGCCTTTTGGTCTTGCTGCCATAGCAAATACCGTGCCTCTTAAGAACATGAACCTGTTTTTCTTCATTTTTTAGCAGATTTCTTAACGAAATATATAGCATACTATTTTGTTTAACACATAAGCAGACACCCTGTC-GAAGCAAAGAGACATCTACTCCACCATTACCACCCATCCCTCTGCTAACGTGGCTGCTGAAGATGT s panTro2.chr4_random 2730702 228 + 6711082 CTACTATGCACATTTTTGTTACTTAAGCCTTTTGGTCTTGCTGCCGTAGCAAATCCTGTGCCTCTTAAGAACATGAACCTCTTTTACTTCATTTTTTAACAGATTTCTTAATGAAATATATACCATACTATTTTGTTTAACACATAAGCAGACACCCTGTCAGAAGCAAAGAGACATCTATTCCACCATTACTACCCATGCCTCTGCTAATGTGGCTGCTGAAGATGT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 12332186 228 + 72422247 CTACTATGGACATTTTTGTTACTTAAGCCTTTTGGTCTTGCTGCCGTAGCAAATACTGTGCCTCTTAAGAACATGAACCTGTTTTACTTCATTTTTTAGCAGATTTCTTAATGAAATATATACCATACTATTTTGTTTAACACATAAGCAGACACCCTGTCAGAAGCAAAGAGACATCTACTCCACAATTACCACCCATCCCTCTGCTAATGTGGCTGCTGAAGATTT i ponAbe2.chrUn N 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=49299.000000 s hg19.chr4_gl000194_random 7954 109 + 191469 TACCTAGAGCAGAGGAC-TTTGTGTTCAGCCTAAGCACTTTGTATCC--TTTATTTTCAATTGGGTAGGAGATAAAATAATTCAGCAGCAATAAAAGTCACACTTCTTAAAg s ponAbe2.chrUn 12332414 110 + 72422247 TACCTAGAGCAGAGGACTTTTGTGTTCAACCTAAGCACTTTATATCC--TTTATTTTCAATTGGGTAGGAGATAAAATAATTCAGCAGCAATAAAAGTCACACTTCTTAAAg i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 2730930 109 + 6711082 TACCTAGAGCAGAGGAC-TTTGTGTTCAACCTAAGCACTTTATATCC--TTTATTTTCAACTGGGTAGGAGATAAAATAATTCAGCAGCAATAAAAGTCACACTTCTTAAAg i panTro2.chr4_random C 0 C 0 s calJac1.Contig24899 4820 111 + 8060 CACCAAGAGCTGAGGAC-TTTGTGTTCATCTTGAGCATTTTATAGCCCTTTCATTTTCACCTAGGTATGAGATAAAATAATCCAGCAGCAACACAGCTCACACTTCTTAAAG i calJac1.Contig24899 N 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=657907.000000 s hg19.chr4_gl000194_random 8063 2544 + 191469 ttgcagtctcaccaatgcaccacaatgtagcagtctctcttatgaggtatcacgtggagttcttcatctcaccaccaagatgattaaggaacagggacacacgggtgaggttggagggaaagtttaataatcaaaaggaggaagctctctgcagcagacaagagagtccaactggattgccgtttttactgttgaatcaaaaagcttttataagaaactcctctcagctctatataaaactgtctgcacaattccctttatatatccagctgtgggtatgtgtctagtcaagcacaaagtaggcttctcttgtttgtataactgtgggtttgttttaggtaagcccccctcctccctgtgcaagttcccacagaggccgccatgtatatgcctgaaaaagggaggaaaattttacctgggagcttgccaattacacaaagaacagaaggcatgtgtgctggaccttgcatgcttatctgttcaggacttatctgtaggtgcagtagttgtgatttttcaggcagacagcttccctgaggaccagtctcttacttgtttactgaactaattttcctttccttctccctcaACATTATGCAGCAAAACAGAGTACACTTCTCTTTCCCAGTAAACCAG-GTTGGTACTCCACTCTGAATACTTGTATTATTGGATTTCTTAG-AAAAAAATATTTGGGATCATAATTTAGATGCCATCAAACAATGAACAAAAACATGCTACTTCGTTTCCCTTCTCTTCTCTTGTTACCAGACAATAGCTAGTTTTCTTTTCTCTCCAACCCCTTTTTTCTGTGCTTCTACCTGATTTTT-GAAAAAACTTCTACACATTTCCAATCTTAGTATAGCAGACATCAAATATGTGGTCAAACTACATACATAGGAAGAATAGAATTATATAATTATATTCAAGCATTTTAAAATAATTCCCCTTCAGTTTGTTTTGCAGTTATTTTACATAATCAAATGTCTTCCTGATATACTTTCCAACCCAGTGGTTGTCAAGCTCTGCTTTGTTTTCTAATTGCATCAGAATTATCCACAAGTC-tttttttttttttttttgagatggagtcttactgttgcccaggctggagtgcagtggcgtgatctcagctcactgtcatctctgcctccctgattcaagtgattctcctgcctcagcctcccaagtagctgggactacagatgtgtaccaccatgcctggctaatttttgtatttttagtagagatgaagtttcaccatgttggccagactggttttgaattcctgacctcaagtgatccactgcctgggcctcccaaagtaggaattaTCCAAAATTCTTATGATAAATATGGATAAATCAGCACAACTCAAGATTTAAGAAATAAAAATTTCCAAGAGAAGAAACCCAGGAATATGCATTGAAAATGTCTCCCTCAGGTGATTCTGATGTGATATGTGGTCTGAGTTTAAAATGCAAGGAAAATTACCTtccctgccctccagttggcccttatgtccagatgtccctcttcccctttctcattgtgctctctccttctgtgcctttgttctattctccctccacttctcatccagatgccaagccctcttccatcaattgtcttaaaactccaaatggtcagttgcctctaaactttcctctgtcccatgaacaagttatgcaggcaaatgtagaatttaagcttggaccaagctgaatcaagagctgcaattaaaggtttccctaagcccagaggggaccagcgaatactttacttatagaagattttggatttcctctgaatgcataaggctctgggtaacctgaTTctatagaccaaatgttattgtcccactcaaattcaagtgctggtatctaattccctatgtgatgatatttggaggtagggccttggggaatgattagctcatgaaggcaggggccacaggagtgggattagtagcccctattgaaggcaccatagagagctccctcatcccttctgtcatgtgaggacatggtagaaacatggctgtctatgaaccacaaagcaagcccacaccagacatggaatctgctaaccacttgaccttgaattttgccatctccaaaactgaaagaaacaaattggtttataagcttcctcatctatggcattctgttTTGACTCCAGATTAGCTAAAAACACCAAAatatcaacttgtacaccaaattttcgaaatggatgctaaaactttgatagcaaaaggtgactgatctgcctgagaaatgaagctacatgatccctctttccacaaagctggagggagagtcaacacaagcaaaaataggtcaaattcttctaaaagccatacctgaagggttttcaatatcacttgatcagatcgtaatttaatcacacaaagagccataacaaaacacacaactatcagaggttttcaatgtcaccttaaaaacatcatctacaatattagggagtgaaagaagtCATGGAAGTTTCAAAAAGTCAAACTTTATTTCAGTGTTATGGTAGAAATTT s ponAbe2.chrUn 12332524 2540 + 72422247 ttgcagtctcaccaatgtaccacaatgtagcagtctgtcttgtgaggtatcacctggagttcttcatctcaccaccaagatgattaaggaacagggacacacgggtgaggttggagtgaaagttaaataagcaaaagggggaggctctgtgcagcagacaagggggtccgagtggattgccatttttacagttgaatcaaaaagcttttataagaaactcctctcagctatgtataaaactgtctgcacaattccctttctatgtccagctgtgtgtatgtctctagtcaagcacaaagtgggcttcttttgtttctataac--tgggtttgttttaggtaagcccccctcctccctatgcaagttcccacagaggccaccatgtacatgcctgaaaaagggaggaaaatttttcctgggagcttgccaattacacaaaggacagaaggcctctatgctggaccctgcatgcttatctgttcagggcttatctgtaggtgcagtagttgtgatttttcaggcagacagcttccctgaggaccagtctcttacttgtttactcaactaattttcctttccttctccctcaACATTATGCAGCAAAACAGAGTACACTTCTCTTTCCCAGGAAATCAGTGTTGGTACTCCACTCTGAATACTTGTATTATTGGATTTCTTAGAAAAAAAATATTTGGGATCATAATTTAGATGCCATCAAACAATGAACAAAAATATGCTACTTTGTTTCCCTTCTCTTCTCTTGTTACCAGACAATAGCTAGTTTTCTTTTCTCTCCAACTCCTATTTTCTGTGCTTCTACCTGATTTTT-AAAAAAACTTCTATACATTTCCAATCTTAGTATAGCAGATGTTAAATATGTGGTCAAACTACATACATAAGAAGAGTTGAATTATATAATTATATTTAAGCATTTTAAAATAACTCCCCTTCAGTTTGTTTTGCAGTTATTTTACATAATCAAATGTCTTCCTGATATACATCCCAACCCAGTGGTTGTCAAGCTCTGCTTTGTTTTCTAATTGCATCAGAATTATCCACAAttcttttttttttttttttttgagatggagtcttactgttgcccgggctggagtgcagtggcatgatctcagctcactgtcatctctgcctccctgattcaagtgattctcttgcctcagcatcccaagtagctgggactacaggtgtgcaccaccatgcctggctaatttttgtatttttagtagagatgaggtttcaccatgttggccaggctggttttgaattcctgacctctagtgatccactgcctgggcctctcaaagtAAGAGTTATCCAAAATTCTTATGATAAATATGGGTAAATCAGCACAACTCAAGATTTAAGAAATAAAAATTTCCAAGAGAAGAACCCCAGGATTATGCATTGAAAATGTCTCCCTCAGGTGGTTCTGATGTGATATGTGGTCTGAGTTTAAAATGCAAGGAAAATTACCTtccctgccctccagttggcccttatgtccagatgtccctcttcccctttcttactgtgctctctccttctgtgcctttgttctattctccctccacttctcatccagatgtcaagccctcttccatcaattgtcctaaaactccaaatggtcagttgcctctaaacttccctctgtcccatgaacaagttatgcaggcaaatgtagaatttaagcttggaccaagctgaatcaagagctgcaattaaagatttccctaagcccagaggggaccagcaaatatgt-----atagaagattttggatttcctctgaatgcataaggctctgactaacctgacgctatagaccaaatgttattgtccccctcaaattcaagtgttgaaatctaattccctgtgtgatgatatttggaggtagggcattgggcaatgattagatcatgaaggcagggaccacatgagtgggattagtagcccctgttgaaggcaacatggagagctccctcatcccttttgtcatgtgaggacatggtagaaacatggctgtctatgaaccacaaagcaagcccacaccagacatggaatctgctaaccacttgaccttgaattttgccatctccagaactgagagaaacaaatttgttcataagcttcctcatctatggcattctgttTTGACCCCAGATTAGCTAAAAACACCAAAatatcaacttctacaccaaattttggaaatggatgctaaaactttgatggcaaaaggtgactgatctgcctgacaaatgaacctacatgatccctctttccacaaagctggagggagagtcaacacaagcaaaaataggtcaaagtcttctaaaagccatacctgaagggttttcaatatcacttcatcagatggtaatttaatcacacaaagaaccacaacaaaacacacaactatcagaggttttcaatgccacctcaaaaacactatctacaatattagggagtgaaagaagtCATGGAAGTTTCAAAAAATCAAACTTTATTTCAGTGTTACGGTAGAAATTT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 2731039 2533 + 6711082 ttgcagtctcggcaatgcaacacaatgtatcagtctctcttgtgaggtatcaccttgagttcttcatctcaccaccaagatgattaaggaacggggacacacgggtgaggtgggagtgaaagtttaataagcaagaggaggaagctctctgcagcagacaagggcgtccaagtggattgccgtttttacagttgaatcaaaaagcctttataagaaactcctctcagctgtatataaaactgtctgcacaattccctttatatatccagctgtggacatgtctctagtcaagcacaaaatgagcttctcttgtttgtataactgtgggtttgttttaggtaagcccccctcctccctgtgcaagttcccacagaggccgccatgtatatgcctgaaaaggggaggaaaattttacctgggagcttgccaattacacaaagaacagaaggcatcggtgctggaccctgcatgcttatctgttcagggcttatctgtaggtgcagtagttgtgatttttcaggcagacagcttccctgaggaccagtctcttacttgtttactcaactaattttcctttccctctccctcaACATTATGCAGCAAAATAGAGTACACTTCTCTTTCC-AGTAAATCAGTGTTGGTACTCCACTCTGAATACTTGTATTATTGGATTTCTTAGGAAAAAAATATTTGGGACCATAATTTAGATGCCATCAAACAATGAACAAAAATATGCTACTTCGTTTCCCTTCTCTTCTCTTGTTACCAGACAATAGCTAGTTTTCTTTTCTCTCCAACTCCTTTTTTCTGTGCTTCTACCTGATTTTTTAAAAAAACTTCTACACATTTCCAATCTTAGTACAGCAGACATCAAATATGTGGTCAAACTACATACATAGGAAGAGTTGAATTATATAATTATATTCAAGCATTTTAAAATAATTCCCCTTCCGTTTGTTTTGCAGTTATTTTACATAATCAAATGTCTTCCTGATATACGTCCCAACCCAGTGGTTGTCAAGCTCTGCTTTGTTTTCTAATTGCATCAGAATTATCCACAAttt-tttttttttttttttttgagatggagtcttactgttgcccaggctggagtgcagtggtgtgatctcagctcactgtcatctctgcctccctgattcaagtgattctcctgcctcagcctcccaagtagctgggactacaggcatgtaccaccatgcctggctaatttttgtatttttagtagagatgaggtttcaccatattggccaggctggttttgaattcctgacctcaagtgatccactgcctgggactctcagagtAAGAATTATCCAAAATTCTTATGATAAATATGGATAAATCAGCACAACTCAAGATTTAA----TAAAAATTTCCAAGAGAAGAAACCCAGGAATATGCATTGAAAACGTCTCCCTCAGGTGATTCTGATGTGATATGTGGTCTGAGTTTAAAATGCAAGGAAAATTACCTtccctgccctccagttggcccttatgtccagatgtccctcttcccctttctcactgtgctctctccttctgtgcctttgttctattctccctccacttctcatccagatgccaagccctcttccatcaattgtcctaaaactccaaatggtcagttgcctctatacttccctctgtcccatgaacaagttactcaggcaaacgtagaatttcggcttggaccaagctgaatcaagagctgcaattaaagatttccctaagcccagaggggaccagcaaatactt-----acagaagattttggatttcctccgaatgcataaggctctgggtaacctgatgctatagaccaaatgttattgtccccctcaaattcaagtgctgaaatctaattccctatgtgatgatatttggaggtagggccttggggaatgattagatcatgaaggcagggaccacaggagtgggattagtagcccctattgaaggcaccatagagagctccctcctctcttctgtcatgagaggacatggtagaaacatggct----atgaaccacaaagcaagcccacaccagacatagaatctgctaaccacttgaccttgaattttgccatctccagaactgagagaaacaaatttgtttataagcttcctcatctatggcattctgttTTGACCCCAGATTAGCTAAAAACACCAAAatatcaacttgtacaccaaattttcgaaatggatgctaaaactttgatggcaaaaggtgactgatctgcctgagaaatgaacctacatgatccctctttccacaaagctggagggagagtcaacacaagcaaaaataggtcaaagtcttctaaaagccatacgtgaagggttttcaatatcacttgatcagatggtaatttaatcacccaaagaaccacaacaaaacacacaactatcagagtttttcaacgtcacctcaaaaacaccatctgcaatattagggagtgaaagaagtCATGGAAGTTTCAAAAAGTCAAACTTTATTTCAGTGTTATGGTAGAAATTT i panTro2.chr4_random C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=74990.000000 s hg19.chr4_gl000194_random 10607 192 + 191469 GAGATTCTTAGTTAAGCTATGAATAAATCCTTGGGCAGGT----GCA-GGCATGGAGATTCTGGGGTGCAGATGCTGAGTTTAA-ATCTT------------CCTTTGGAGATGCCCCCTGGCCCCCTCAACCCCTGTCTGCCTGTCAAGAAGAGGCCATCCTGGGCAGAACATTAGAGGCAAATGGCCCAGATGCCTAGCTGAGGGCAA s panTro2.chr4_random 2733572 193 + 6711082 GAAATTCTTAGTTAAGCTATGAATAAATCCTTGGGCAGAT----GCA-GGCATGGAGATTCTGGAGTGCTGCTGCTGAGTTTAAGAGCTT------------CCTTTGGAGATGCCCCCTGGCCCCCTCAACCCCTGTCCACCTGTCAAGAAGAGGCCATCCTGGGCAGCACATTAGAGGCAAATGGCCCAGATGCCTAGCTGAGGGCAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 12335064 193 + 72422247 GAAATTCTTAGTTAAGCTATGAATAAATCCTTGGGCAGGT----GCA-GGCATGGAGATTCTAGGGTGCAGCTGCTGAGTTTAAAACCTT------------CCTTTGGAGATGCCCCCTGGCCCCCTCAACCCCTGTCTGCCTGTCAAGAAGAGGCCATCCTGGGCAGCACATTAGAGGCAAATTGCCCAGATGCCCAGCTGAGGGCAA i ponAbe2.chrUn C 0 C 0 s papHam1.scaffold27881 25590 203 - 25872 GTAATTCT------AACACTGAATACATTCTAGGGCAGGTGGTGGCATGGCATGGCGACTTTGGGGCACAGATGCTGAGTTTCAAAGCTTCGGTTTCTATACCCTTTGGAGATGCCCCCTACCCTCCTT-ACCCCTGCCCAGCTGTCAAGAAGAGCCTGTCCTGAGAGGCACCTCAGGGGCAAACAGCCCAGAAGCCCAGTTCAGCGCAG i papHam1.scaffold27881 N 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=25392.000000 s hg19.chr4_gl000194_random 10799 90 + 191469 ACCTCCATGCCTGGAGGAGGAGGTCGCCTCTGGGAGCAGGAGGACCTGCTGGAACCCCTGCTCACAGGCTCCTTTTCTTGCTCTCCAGCA s ponAbe2.chrUn 12335257 90 + 72422247 ACCTCCATGCCTGGAGGAGGAGGTCGCCTCTGGGAGCAGGAGGACCTGCTGGAACCCCTGCTCACAGGCTCCTTTTCTTGCTCTCCAGCA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 2733765 90 + 6711082 ACCTCCATTCCTGGAGGAGGAGGTCACCTCTGGGAGCAGGAGGACCTGCTGGAACCCCTGCTCACAGGCTCCTTTTCTTGCTCTCCAGCA i panTro2.chr4_random C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=76457.000000 s hg19.chr4_gl000194_random 10889 272 + 191469 CCTCCTGTAGGCAGGCAAACACCCCCAGCAGCAGTAGCAGCAGGCTCTTC------AGC-AGCAGTGCTGCTGCTCTGCTGAATGAGAGAAGTCCCTCTCCAGTGAGGCAGA-GGAGCCCAGGTTGCACACCCTGGTCTCTGCCTCCATAGCTTCCACTGTGCCCAGGACTGGGAGCAGTGTGGGAGCTGCTGGCTGGAGCTGTGCTGGTCACCCCCTCTCTGCC--ACC-----------TCTAGCTCCAGCCACACTTTCAGCTCCAGGGCTG-AGGCCGGTGGCTGTACAG s panTro2.chr4_random 2733855 272 + 6711082 CCTCCTGCAGGCAGGCAAACACCCCCAGCAGCAGTAGCAGCAGGGCCTTC------AGC-AGCAGGGCTGCTGCTCTGCTGAATGAGAGAAGTCCCTCTCCAGTGAGGCAGA-GGAGCCCAGGTTGCACACCCTGGTCTCTGCCTCCATAGCTTCCACTGTGCCCAGGACTGGGAGCAGTGTGGGAGCTGCTGACTGGAGCTGTGCTGGTCACCCCCTCTCTGCC--ACC-----------TCTAGCTTCAGCCACACTTTCAGCTCCGGAAAAG-AGGCCGGTGGCTGTACAG i panTro2.chr4_random C 0 N 0 s ponAbe2.chrUn 12335347 272 + 72422247 CCTCCTGCAGGCAGGCAAACACCCCCAGCAGCAGTAGCAGCAGGCCCTTC------AGC-AGCAGGACTGCTGCTCTGCTCAGTGAGAGAAGTCCCTCTCCAGTGAGGCAGA-GGAGCCCAGGTTGCACACCCTGGTCTCTGCCTCCATATCTTCCACTGTGCCCAGGACTGGGAGCAGTGTGGGAGCTGCTGGCTGGAGCTGTGCTGGTCACCCCCTCTCTGCC--ACC-----------TCTAGCTCCAGCCACACTTTCAGCTCCAGGGCTG-AGGCCGGTGGCTCTACAG i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_154968 522 244 - 5092 CTTCCAGCTCGAAAGCCAGCACTTCT-GCTGCTGGAGGAGCAGGCTCTCCCTCGAGAGCGGGCAGTGCCGATGC---GTGGAGCGG--------------CAGTGAGGCAGGTGGAGCCGAACTTGC----------CTCCGGCTCTGCAGCT-----TGTGCTCCTGA-------CGGTGCTGGAGCTGCCTTCTGCTCCTGAGCAGGT-------GCTCCGGCTGACCAGGTCAGATGGTCTAGCTCCAGGGAGGGCATGGGCCCCATCCCTGTAGGGGGGCAGCTGTG--- i dasNov2.scaffold_154968 N 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=31869.000000 s hg19.chr4_gl000194_random 11161 320 + 191469 GAGGTGCCATGAAGTCA--GGCAGCTTCTCACTGGGCTGGTCCTGG---GCAGTCC--CAGG--GCAATGGTA-GGAGGGCTCTGGAGCCTCCT--CTAGCT----------------------CCAGCGCTGTCCCTGGAGGGGGCTTTGACCCTGGTGCTAGCACTGGCTCAACAGCTGGCACTGGAAATAGCTGTATTTCTGCACCTGAAGCAGGAATTGAAAAAGGAGAGAGGTCACCAATATCACTCACTTTCCACTGGAATTTCCAAACATGAAAACAACCTCACTGAATTTAAAGGAATTTCAGCCTGAAAACATTGTCCCTGGAAAGACTTCCAGACTGCAGGTGA s ponAbe2.chrUn 12335619 319 + 72422247 GAGGTGCCATGAAGTCA--GGCAGCTTCTCACTGGGCTTGTCCTGG---GCAGTCC--CAGG--GCAGTGGCA-GGAGGGCCCTGGAGATTCCT--CTAGCT----------------------CCAGCGCTGTCC-TGGAGGGGGCTCTGCCCCTGGTGCTGGCACTGGCTCAACAGCTGGCACTGGAAATAGCTGTATTTCTGCACCTGAAGCAGGAGCTGAAAAAGGAGAGAGGTCACCAATATCACTCACTTTCCACTGGAATTTCCAAACATGAAAACAACCTCACTGAATTTAAAGGAATTTCAGCCTGAAAACATTGTCCCTGGAAAGACTTCCAGACTGCAGGTGA i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_154968 766 334 - 5092 GTGGTGC--TGGAGCCACCTGCAGCTCAGGAGCTGGC--GCCCCGGCGCACAATACGTCAGGCTCTATTTGCACGGGAGGCACTGGAACCACCTCGCCAGCTGGCATTCCGGGTGGTGATGGAGCCGACTCTGGCTCTGGACCTGTGTCGGCCGCAGGGGTTGGAACTGGCTCTGGCGGTCGCACTGGAGGCATCTGTGGCTCTGGAGCTGACAAAGGAGCTGGACAAGAGGCAGTTTCTCCACCATGAATGGC-TCCGAGTGTCATTCCAAAACA--GAGAAGATCCCACTACCTCTAGGGGAAG---ATCCTG----------CCCAGGAAAGTGCTCTCCGCCGCATGCTC i dasNov2.scaffold_154968 C 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=3331.000000 s hg19.chr4_gl000194_random 11481 37 + 191469 CCTCAGCATGTGCCTGTGTCTCAATGAGCTCCAGAGG s ponAbe2.chrUn 12335938 37 + 72422247 CCTCACCATGTGCCTGTGTCTCAATGAGCTCCAGAGG i ponAbe2.chrUn C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-10518.000000 s hg19.chr4_gl000194_random 11518 49 + 191469 CTCC-AGCTGGACAAGGACAAT--GTGCGGATGTGGCCCTGGTGGGAT-CACT s ponAbe2.chrUn 12335975 49 + 72422247 CTCC-AGCTGGACAAGGACAAT--GTGCAGATGTGGCCCTGGTGGGAT-CACT i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_23548 11065 44 - 57422 -CCCAGGCTGG-AGTGGACGAT--CTGAGGCTG---CCCAGGCAGGCCACA-- i dasNov2.scaffold_23548 N 0 C 0 s proCap1.scaffold_23156 28004 36 + 29892 -----------ATATGGGTAATGGCTGA-ATTG---GCCTGGGGGGAGACA-- i proCap1.scaffold_23156 N 0 N 0 s myoLuc1.scaffold_138200 299345 27 + 496319 -----AGCT--CCAACCATAGA--TTTTGGGCGTGG----------------- i myoLuc1.scaffold_138200 N 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=4724.000000 s hg19.chr4_gl000194_random 11567 54 + 191469 GGTGAGGCCTGGCCTGGTAGCTCCATCTGGGGCCTGATGTCTACCTGGTGACTC s ponAbe2.chrUn 12336024 54 + 72422247 GGTGAGGCCTGGCCTGGTAGCTCCATCTGGGGCCTGGTGTCTACCTGGTGACTC i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_23548 11109 27 - 57422 GGGTAGGCCTGGCCTA-------CATCTCCTGCC-------------------- i dasNov2.scaffold_23548 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=6856.000000 s hg19.chr4_gl000194_random 11621 28 + 191469 CTGTCCTGTGG--TACTTGGGGGCACCTTC s papHam1.scaffold32548 11819 28 - 18345 CTGCCCTGTGA--TACTTGGGGGCACCTTC i papHam1.scaffold32548 N 0 N 0 s ponAbe2.chrUn 12336078 27 + 72422247 CTGTGCTGTGG--TACCTGGGGG-GCCTTC i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_23548 11136 30 - 57422 CAGCCCCATGGGTTACCTCATGGCTCCTCC i dasNov2.scaffold_23548 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=32827.000000 s hg19.chr4_gl000194_random 11649 209 + 191469 TGCTAAATGGCCAGAGGCATCTGGGGTGAGGGATGAGCCTACAAGGGCATTGTCAGAAAAGAAAGATTCTCACTCCTGCCATTCCTGAAGCAGGAGCCTTGAGATGTGGGGATGCAGCACAAGAACATCTTGCTGTCTTGAGCATCTCCCACCAAGTGAGCTGGCTATGGGGCTAACTCTAGGATGTGGGTGCCTGGTTATCGGGAttc s ponAbe2.chrUn 12336105 209 + 72422247 TGCCAAATGGCCAGAGGCATCTGGGGTGAGGGATGAGCCTACAAGGGCATCATCGGAAAAGAAAGGCTCTCACTCTTGCCATTCCTGAAGCAGGAGCCTTGAGATGTGGGGATGCAGCACAAGAACATCTGGCTCTCTTGAGCATCTCCCGCCAAGTGAGCTGGCTATGGGGCTAACTCTAGGATGTGGGTGCCTGGTTATCGGAATTC i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_23548 11166 203 - 57422 TAGTAAACGGCCACAGCCATCGAGGCCGTGGGGTGAGCCAACGCCAGCAGCATTGTATAAGC----CTCTCACCACAGGGACTTTTGGCACGGGAGCCTTGGGGAGCTCGGAGGCAGCAAGTGAACATCTTGCTGTCTGGAGTTTCTCTGCCCGAGTGAGCAG--TTAGGGGCTGTCTCTAGAATGTGGGTGCCTAGTTACCAGGCTCC i dasNov2.scaffold_23548 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=44081.000000 s hg19.chr4_gl000194_random 11858 570 + 191469 ttttttttttttttgagacatagtctcattctgttggccaggctggagtgcagtttcatgatctcagctcactgcaacatccgcctaccaggttcaatcaattctcctgcctcagtctcctgagtagctgggattacaggcacaagacatgcaccaccacacctggctagttgtttt----------------ttttttttttttttttttttgagacagagcctcgctctgtctcccaggctggatggagtgcagtggcgcgatgttggctcacttcaagctccgcgtcctgtgttcatgccattcttctgcctcagcctaccgagtagctgggactacaggcacctgccactatgcccggctaatttttgtatttttagtagagatggggtttcactgtgttagccagtatggtctcgatctcctgaccttgtttgttttttgtatttttagtagacatgtgcttttaccatgttggtcaggctggtctcgatctcctgatttcatgatcctcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccTGGTTTCCAGAATTCT s ponAbe2.chrUn 12336314 580 + 72422247 Atttttttt-----gagacatagtctcattctgttggccagactggagtgcagtggcatgatctcggctcactgcaacatctgcctactgggttcaatcaattctcctgcctcagtctcctgagtagctgggattacaggcatgagacatgtaccaccacacctgactagtttttttgtgatggtttttgttgttgttgttgttgttgtttttaagacagagtctcgctctcttgcccaggctggatggagtgcaatggcgcgaccttggctcactgcaagctccgtgtcccgggttcatgccattctcctgcgtcagcctcccgagtagctgggactacaggtgcccaccactacgcccggctaatttttgtatttttagtagagacggggtttcactttgttagccaggatggtctcgatctcctg-ccttgtttgttttttgtatttttagtagacatgtggttttaccatattggtcaggctggtctcgatctcctgatttcatgatcctcctgcctcagcctcccaaagtgctggcattacaggtgtgagccactgtgcctggccTGGTTACCAGATTTCT i ponAbe2.chrUn C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e dasNov2.scaffold_23548 11369 0 - 57422 C a score=11096.000000 s hg19.chr4_gl000194_random 12428 74 + 191469 AAGTTCCGTTAGGGTCTGTTGCCAAGGAAGTGAGGTCGCTTCTTTAAGGTTCTGTCCCCTTGGCCTCCTCCTTC s dasNov2.scaffold_23548 11369 69 - 57422 AAGTTCTGTTGGGCACCATCTCCAAGGAAGTGAGGTCACTTCCT---GTGTCCCCCTCCCTGTGTTCCT--TTC i dasNov2.scaffold_23548 C 0 C 0 s ponAbe2.chrUn 12336894 74 + 72422247 AAGTTCTCTTAGGGTCTGTTGCCAAGGAAGTGAGGTCACTTCTTTAAGGTTCCATCCCCTCGGCCTCCTCCTTC i ponAbe2.chrUn C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-7288.000000 s hg19.chr4_gl000194_random 12502 81 + 191469 CTGAAGACCTACTC---AG-------GACCCCAGTGGGCTGCTGACTGCTCACCT------------T--CCACACAGGTC----------AACTCCTT----ACCTGTACACAGTTAT s ponAbe2.chrUn 12336968 81 + 72422247 CAGAAGACCTACTC---AG-------GACCCCAGTGGGCTGCTGACTGCTCACCT------------T--CCCCACAGGCC----------AACTCCTT----ACCTGTATACAGTTAT i ponAbe2.chrUn C 0 C 0 s dasNov2.scaffold_23548 11438 85 - 57422 CTGGATAACAATTCCCGAG-------GACCCCTGTGGGCTGCTGACTGCTCACCA------------T--CCTCTC---CC----------ATGTCCTTTCCCAACTGTGCTCAGTTTC i dasNov2.scaffold_23548 C 0 C 0 s petMar1.Contig22977 10443 82 + 15049 CTGAGAGTCCACCT---AGGCCCTGAGAGTCCACCTGGGTCCTGAGAGTCCACCTGGGCCCTGAGAGT--CCACCTGGGCC----------ATGAGA---------------------- i petMar1.Contig22977 N 0 T 168 s fr2.chrUn 308069405 78 - 400509343 ---aaaacctacTC---TGT------TACGCAACTGGA--CCAACCTTCTCACTA------------T--CTACACAAGTC----------ATTCCGCTT---AAGTCTGAGAGACACC i fr2.chrUn N 0 C 0 s oryLat2.scaffold877 12557 89 - 77346 ----aaatccacTC---AG--------Atcccattgaagtgcagactttcagctt------------ttattccatgggttgaataaaaagattacataa---aaatgtgaaaaactaa i oryLat2.scaffold877 N 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-10092.000000 s hg19.chr4_gl000194_random 12583 33 + 191469 GTCCACCCAG--------GGCCTGCTTGGACACCTGCACCT s dasNov2.scaffold_23548 11523 10 - 57422 ACCAGCACAG------------------------------- i dasNov2.scaffold_23548 C 0 N 0 s ponAbe2.chrUn 12337049 33 + 72422247 GTCCACCCAG--------GGCCTGTTTGGACACCTGCACGT i ponAbe2.chrUn C 0 C 0 s oryLat2.scaffold877 12646 34 - 77346 agcatttttaaac-acaatccctggAGCAGGACCT------ i oryLat2.scaffold877 C 0 C 0 s fr2.chrUn 308069483 34 - 400509343 TGGATCTCAAACCGGCTTTTCCTGGTACAACAAC------- i fr2.chrUn C 0 C 0 e petMar1.Contig22977 10525 168 + 15049 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-3915.000000 s hg19.chr4_gl000194_random 12616 25 + 191469 GATGTTCACCAGAGGCCTAGG------AATC s danRer6.Zv8_NA5594 76998 31 - 181646 GACCTACACTGCAAGTCCAGGAAGGGAGGTG i danRer6.Zv8_NA5594 N 0 I 2 s ponAbe2.chrUn 12337082 25 + 72422247 GATGTTCATCAGGGGCCTAGG------AATC i ponAbe2.chrUn C 0 C 0 s petMar1.Contig22977 10357 19 + 15049 ------CACCTGGGCCATGAG------AGTC i petMar1.Contig22977 T 168 C 0 s oryLat2.scaffold877 12680 4 - 77346 ---------------------------Tgtg i oryLat2.scaffold877 C 0 I 2 s fr2.chrUn 308069517 4 - 400509343 ---------------------------AATG i fr2.chrUn C 0 I 2 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-8519.000000 s hg19.chr4_gl000194_random 12641 54 + 191469 CACTTGGGG-CCTGGGAACCT---ACAGGGGCCTAATGTTAC---CCTGCAGATTGGGTAG s ponAbe2.chrUn 12337107 54 + 72422247 CACTTGGGG-CCTGGGATCCT---ACAGGGGCCTAATATTAC---CCTGCAGATTGGGTAG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370406 53 - 924072 CCCCTAGAG-TCCAGTGTTCC---CCTAGAGTCCAGTGTTCC---CCTAGAG-TCCAGTGT i xenTro2.scaffold_494 N 0 C 0 s fr2.chrUn 308069523 58 - 400509343 CACAATTGATCCTGATGGCCTGGAACAAAGATTTGCAGCtcc---attaaaaacactgaag i fr2.chrUn I 2 C 0 s oryLat2.scaffold877 12686 53 - 77346 ctctcagga-cctggtggtct---ctcaggacctggtggtct----ctcaggacccggtgg i oryLat2.scaffold877 I 2 C 0 s danRer6.Zv8_NA5594 77031 51 - 181646 CCC-------CTGGGTAGCTT---GCTGGGGTCAGAGATCCCTAGGTGGAGGGCCAAGGGG i danRer6.Zv8_NA5594 I 2 C 0 s petMar1.Contig22977 10376 37 + 15049 CACCTGGGG-CATGAGAGCCC--ACCTGGGCCCTGAGAGT--------------------- i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-41732.000000 s hg19.chr4_gl000194_random 12695 89 + 191469 CCACCTGGGGACCAGACATCAACCTGGGTACTGTG-GTTGACCTGTGGGCTAAT-GTCCGGCTGGGGACTGGTTATTCACCTGAG-GCCTGA s ponAbe2.chrUn 12337161 89 + 72422247 CTACCTGGGGACCAGTTATCACCCTGGGGACTGTG-GTTGATTTGCGGGCTAAT-GTCCACCTGGGGACTGGTTATTCACCTGAG-GCCTGA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370459 87 - 924072 TCCCCTAGAGTCCAGTGTTCCCCTAGAGTCCAGT--GTTCCCCTAGAGTCCAGT-GTTCCCCTAGAGTCTAA-TGTTCCCCTAGA-GTCTAA i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 308069581 77 - 400509343 --------gaaCTGCTCAGCTTCTTCGACCCCTCG-GGGCCTTTGAGCCGCTCT-TTCCAc----atcct-gctgtgatgcagAGATCCTCA i fr2.chrUn C 0 C 0 s gasAcu1.chrXIV 6840491 70 + 15246461 -CCACCGGGGTAGGCACCACCCCCTCCACCAGGGT-AACCCCCTGCACCAGGTT-GACCCC----AACCT----GTATTTC----------- i gasAcu1.chrXIV N 0 C 0 s oryLat2.scaffold877 12739 87 - 77346 tctctcaGGACCCGGTGGTCTCTCAGGACCCGGTG-GTCTCTCAGGACCTGTTG-GTCTCTC-AAGACCTAGTGGTCTCTCAGGA--CCTTG i oryLat2.scaffold877 C 0 C 0 s danRer6.Zv8_NA5594 77082 70 - 181646 CACCCTGGGGCCTATACTGC----AAGTCTAAGGG-ACATCAGTGGACCCCTGG-GT--------AGCTT-GCTGGGGTCAGAGG------- i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 10413 91 + 15049 CCACCTGGGCCCTGAGAATCCACCTGGGCTCTGAGAGTCCACCTAGGCCCTGAGAGTCCACCTGGGTCCTGAGAGTCCACCTGGG-CCCTGA i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-40417.000000 s hg19.chr4_gl000194_random 12784 149 + 191469 TGCT----------TACCTGGGG------CCGAATGTCCCCCTCAGGGT------------------------------------GAATTCCACCTCAGGCCTGTATGTCCACC--TGGGGCCTGATGTCTGCCTTAGATCT-CTGTCCCACTGGGGCCTTGTGTTCA----------CC-AGGGACTGGTAT--CCAGCTGTGGCCTGATGACCTA s ponAbe2.chrUn 12337250 149 + 72422247 TGCA----------TACCTGGGG------CCAAATGTCCCCCTCAGGGT------------------------------------GAATTCCACCTCAGGCCTGTATGTCCACC--TGGGGCCTGATGTCTGCCTTAGATCT-ATGTCCCACTGGGGCCTTGTGTTCA----------CC-GGGGACTCGTAT--CCAGCTGTGGCCTGATGGCCTA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370546 151 - 924072 TGTT----------CCCCTAGAG------TCAAATGTTCCCCT-AGAGTCCA---------------------------------GTGTTCCCCTAGAGACCAG--TGTTCCCC--TAGAGTCCAGTGTTCCCCTAGAGTCTAATGTTCCCCTAGAGACCAATGTTCC----------CCTAGAGTCTAATGT--TCCCCTAGAGTCTAATGTTCCC i xenTro2.scaffold_494 C 0 T 288 s fr2.chrUn 308069658 151 - 400509343 TGGTTCCTGAGTTCCTCATGGGT------CCTGAGTTCCTCAT-GGGTCCT----------------------------------GAGTTCCTCATGGGTCCTGA--GATCTTC-----------ATGGTTCCTGAGATCTTCATGGTTCCTGAGTTCCTCATGGGTC----------CTGAGTTCCTCATGG--TTCCTGAGATCCTCATGGTTCC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIV 6840561 129 + 15246461 --------------CCCCTCTGA------CCGGGTAGCCTCCT-GCAGCTG----------------------------------GGTAGCCTCCTGCAGCAGGG-TAGCCTCCTGCAGGAT---ATCCTCCTGCAGGATAT-------CCTCCTGGGTTGCCAG-CT----------CT----GCCCGGGTA--TTGGTTGGGA-----TAGCCTC i gasAcu1.chrXIV C 0 C 0 s oryLat2.scaffold877 12826 151 - 77346 TGGT----------CTCTTAGGA------CCTGTtggtctctc-aagacct----------------------------------ggtggtctctcaggacctgg-tggtctct--caggacctggtggtctctcaGGACCTGGCGGTCTCTCAGGACCTGCCGGTCT----------CTCAGGACCTGGTGG--TCTCTCAGGACCCGTCGGTCTC i oryLat2.scaffold877 C 0 C 0 s danRer6.Zv8_NA5594 77152 188 - 181646 --------------CCCCTAGGTGGAGGGCCAGGGGGCACCCT-GGGGCCTACAATGCAAGTCCAGGGAGAGATATGGACCCCTGGGTAGCATGCTGGGGTCAGA--GGCCCCT----AGGT---GGAGGGCCAAGGGGCACAATGGGGCCT---ATACTGCAAGTCCAGGAAGAGAATTGGATCCCTGGTTAGCTTGCTTGGGC--CAGGGGCCTT i danRer6.Zv8_NA5594 C 0 C 0 e petMar1.Contig22977 10504 0 + 15049 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-1129.000000 s hg19.chr4_gl000194_random 12933 28 + 191469 C-----TGCATCCTGTTGCTCACCTATGGCCTG---- s danRer6.Zv8_NA5594 77340 37 - 181646 TAGGTGGAGGGCCAGGGGGCACCCTGGGGCCTATACT i danRer6.Zv8_NA5594 C 0 C 0 s oryLat2.scaffold877 12977 28 - 77346 T-----TAGATACTGGTGGTCTCTCAAGACCTA---- i oryLat2.scaffold877 C 0 C 0 s gasAcu1.chrXIV 6840690 28 + 15246461 C-----AGCAGCTGGGTAGCCTCCAGCAGCTGG---- i gasAcu1.chrXIV C 0 C 0 s fr2.chrUn 308069809 28 - 400509343 T-----GAGATCCTCATGGTTCCTGAGTTCCTC---- i fr2.chrUn C 0 C 0 s xenTro2.scaffold_494 370409 28 - 924072 C-----TAGAGTCCAGTGTTCCCCTAGAGTCCA---- i xenTro2.scaffold_494 T 288 C 0 s ponAbe2.chrUn 12337399 28 + 72422247 C-----TGCATCCTGTTGCTCACCTACGGCCTG---- i ponAbe2.chrUn C 0 C 0 e petMar1.Contig22977 10504 0 + 15049 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-18162.000000 s hg19.chr4_gl000194_random 12961 92 + 191469 GTGTCTAC-CTGGGGCTTGGTGATCACCTGGGAGCTGGATATCAACCTGGGGCCTGGGTGTCCACTTAAGACCTGATGTGGGCCTGGGGCC-----TG s ponAbe2.chrUn 12337427 92 + 72422247 GTGTCTAC-CTGGGGCTTGGTGATCCCCTGGGAGCTGGATATCAACCTGGGGCCTGGGTGTCCACTTAAGGCCTGATGTGTGCCTGGGGCC-----TG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370437 90 - 924072 GTGTTCCC-CTAGAGTCCAGTGTTCCCCTAGAGTCCAG-TGTTCCCCTAGAGTCC-AGTGTTCCCCTAGAGTCCAGTGTTCCCCTAGAGTC-----TA i xenTro2.scaffold_494 C 0 I 19 s fr2.chrUn 308069837 90 - 400509343 ATGGGTCC-TGAGTTCCTCATGGTTCCTGAGTTCCTCA-TGGGTCCTGAGATCTTCATGGTTC-CTGAGTTCCTCATGGGTCCTGAGATCT-----TC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIV 6840718 78 + 15246461 GTAGCCTC--CAGCAGGTGGATGTTGATTTGGATAATT-CCCTCTCCCAGGGTA------------TTGGTTCGGATAGCCCCCGGCGGCC-----GG i gasAcu1.chrXIV C 0 C 0 s oryLat2.scaffold877 13005 90 - 77346 GTGGTCTC-TCAGGACCTGGTGGTCTCTCAGGACCTGG-TGGTCTCTCAGGACCCGTCTGTCT-CTTAGATACTGGTGGTCTCTCAGGACC-----TG i oryLat2.scaffold877 C 0 C 0 s danRer6.Zv8_NA5594 77377 93 - 181646 GCAAGTCCAGGAAGAGATGTGGACCCCTGGGTAGCTTG-CTGGGGTCAGGGGCATCTAGGTG----GAGAGCCAGGAGGCACCCTGGGGCCTATATTG i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 10504 75 + 15049 GAGTCCAC-CTGGGCCATGAGAGTCCGCCTGGGCCCGG----------AGAGTCCATCTGGACCCTGAGAGTCCA-------CCTGGGGCA-----TG i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-45370.000000 s hg19.chr4_gl000194_random 13053 100 + 191469 ACTGTCCACCCGGGGACTGGGTGTCCACCTGGGGTCTGAT-GTCCACCTGAAGTTAGGTAT-CTACCTAAGGCTTG-GTGTCTACCTGTGACCTGATGTCCAC- s dipOrd1.scaffold_11667 8664 90 - 40507 G-TGTCTGCCTGG----CGGGTGTCTGCCTGATGCATGGT-GTCTGCCTGAAGCATGGTGT-CTGCCTGACGCATG-GTGTCTGCC--TGACGTG-TGTCT--- i dipOrd1.scaffold_11667 N 0 C 0 s ponAbe2.chrUn 12337519 100 + 72422247 ATTGTCCATCTGGGGACTGGGTGTCCACCTTGGGTCTGAT-GTCTACCTGAAGTTAGGTAT-CTATGTAAGTCTTG-GTGTCTACCTGTGGCCTGATGTCCAC- i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_156 1287511 72 + 2219764 ---------------------TGTCCAACTTGGGACTGAT-ATCCAACTTGGGACTGATAT-CTAACTTGGGACTG-ATATCTAACTTGGGACTGA-------- i xenTro2.scaffold_156 n 19 T 256 s fr2.chrUn 308069927 97 - 400509343 --ATGGTTCCTGAGTTCCTCATGGGTCCTGAGTTCCTCAT-GGTTCCTGAGTTCCTCATGG-GTCCTGAGATCTTC-ATGGTTCCTGAGATCCTCATGGTTC-- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIV 6840796 97 + 15246461 --ATTTCCACCGGCGGCCGGATATCTACCGGCGGCCGGAT-TTCCACCCGCAGCCGGATAG-CCACCCGCAGCCGG-ATAGCCACCCGCGA-CTGGATATCCA- i gasAcu1.chrXIV C 0 I 1 s oryLat2.scaffold877 13095 98 - 77346 --TTGGTCTCTCAAGACCTGGTGGTCTCTCAGGACCTGGT-GGTCTCTCAGGACCCGTCGG-TCTCTTAGATACtg-gtggtctctcaggacctggtggtctc- i oryLat2.scaffold877 C 0 I 1 s danRer6.Zv8_NA5594 77470 94 - 181646 --AGAGTCCAGGGAGGGAAGTGGACCCCTGGGTAGCTTGC-TGGGGTAAGAGACCCCTAGG-----TGGAGGGCAA-GGGGGCACTCTAGGGCCTACAATGCA- i danRer6.Zv8_NA5594 C 0 I 3 s petMar1.Contig22977 10579 104 + 15049 AGAGTCCACCTGGGACCTGAGAGTCCACCTGGGCCATGAGAGTCCACCTGGGCCATGAGAGTCCACCTGGGCCATGAGAGTCCACCTGGGCCATGAGAGTCCAC i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-14266.000000 s hg19.chr4_gl000194_random 13153 30 + 191469 -ATGAGTCTGGGGTTTGGTTGGGGCCTGCTG s ponAbe2.chrUn 12337619 30 + 72422247 -ACGAGTCTGGGGTTCGGTTGGGGCCTGCTG i ponAbe2.chrUn C 0 C 0 s dipOrd1.scaffold_11667 8754 26 - 40507 -----GCCTGAAGTGTGGTGTCTGCCTGACG i dipOrd1.scaffold_11667 C 0 C 0 s xenTro2.scaffold_156 1287327 27 + 2219764 -ATGAGGGGAGGGTTAGCTTTTGG---GGCA i xenTro2.scaffold_156 T 256 C 0 s gasAcu1.chrXIV 6840894 30 + 15246461 -CTGCAGGTGGGTTTTGTCTGGGGACTCCTG i gasAcu1.chrXIV I 1 T 231 s oryLat2.scaffold877 13194 30 - 77346 -caggacatggtggtctctcaggacctggtg i oryLat2.scaffold877 I 1 C 0 s danRer6.Zv8_NA5594 77567 19 - 181646 -CCAGGGAGGGAGGTGGACC----------- i danRer6.Zv8_NA5594 I 3 C 0 s petMar1.Contig22977 10683 14 + 15049 CAGGGCCATGAGAG----------------- i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e fr2.chrUn 308070024 0 - 400509343 C a score=-46318.000000 s hg19.chr4_gl000194_random 13183 70 + 191469 TACATCTGGGACCTTGGTGTCTATCTGAGGCCTGATGTCTACC--------------------TGGTGACTGCCATCCTCTTGAGGCCTG--- s ponAbe2.chrUn 12337649 69 + 72422247 TACATCTGGGACCTTGGTGTCTA-CTGAGGCCTGATGTCTACC--------------------TGGTGACTGCCATCCTCTTGAGGCCTG--- i ponAbe2.chrUn C 0 C 0 s dipOrd1.scaffold_11667 8780 53 - 40507 TG------------TGGTGTCTGCCTGACGTGTGGtgtctgcc--------------------tgacgtgtgtctgcct-----gacgtg--- i dipOrd1.scaffold_11667 C 0 C 0 s xenTro2.scaffold_156 1287354 66 + 2219764 AACACTTGGG----TGATATCTAACTTGGGACTGATATCTAAC--------------------TTGGGACTGATATCCAACTTGGGACTG--- i xenTro2.scaffold_156 C 0 C 0 s fr2.chrUn 308070024 47 - 400509343 --------------------CTG---AGATCCTCATGGTTCCT--------------------GAGTTCCTCATGGTTCCTGAGATCCTC--- i fr2.chrUn C 0 T 260 s gasAcu1.chrXIV 6840693 60 + 15246461 --CAGCTGGG----TAGCCTCCA---GCAGCTGGGTAGCCTCC---------------------AGCAGGTGGATGTTGATTTGGATAAT--- i gasAcu1.chrXIV T 231 I 27 s oryLat2.scaffold877 13224 71 - 77346 ----------------gtctctc---aggacctggtggtctctcagGACCCGGtNNNNNNNNNNAGGACCTGGTGGTCTCTCAGGACCTG--- i oryLat2.scaffold877 C 0 I 28 s danRer6.Zv8_NA5594 77586 63 - 181646 ----CCTGGG----TAAATTGTT---GGGGTCAGA-GGCCCCT---------------AGGTGGAGGGCCAGGGGGTACCCTGGGGCCTA--- i danRer6.Zv8_NA5594 C 0 I 6 s petMar1.Contig22977 10697 49 + 15049 -------------------TCCACCTGGGCCCAGAGAGTCTAC--------------------CTGAGATT-----CCACCTGGGTCATGAGA i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-50061.000000 s hg19.chr4_gl000194_random 13253 56 + 191469 CTATCC-ACCTGGGAATGGTTTATCCATGGAAATGGTTATGTCCACCTGGGGCTGGA s ponAbe2.chrUn 12337718 56 + 72422247 ATATCC-ACCTGGGAATGGTTTATCCATAGAAATGGTTATGTCCGCCTGGGGCTGGA i ponAbe2.chrUn C 0 C 0 s dipOrd1.scaffold_11667 8833 48 - 40507 -tgtct-gcctga----tgtgtgtctgcctgacgtgtggtgtctgactga---tgtg i dipOrd1.scaffold_11667 C 0 C 0 s xenTro2.scaffold_156 1287420 22 + 2219764 ATATCCAACTTGGGACTGATTT----------------------------------- i xenTro2.scaffold_156 C 0 n 0 s fr2.chrUn 308069811 18 - 400509343 AGATCC-TCATGGT------------------------------TCCTG-------- i fr2.chrUn T 260 C 0 s gasAcu1.chrXIV 6840780 23 + 15246461 AGCCCC-CGGCGGCC-----------------------GGAT--TTCCA-------- i gasAcu1.chrXIV I 27 C 0 s oryLat2.scaffold877 13323 22 - 77346 AGGACC-TGGTGGTC-----------------------------TCTCAGGA----- i oryLat2.scaffold877 I 28 C 0 s danRer6.Zv8_NA5594 77655 25 - 181646 AAGTGC-AGGAAGAG-----------------------AGGTGGACCCA-------- i danRer6.Zv8_NA5594 I 6 C 0 s petMar1.Contig22977 10746 35 + 15049 --GTCC-ACCTGGCCCGGAGA-------------------GTCCACCTGGGCCCAGA i petMar1.Contig22977 C 0 I 1 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-17007.000000 s hg19.chr4_gl000194_random 13309 83 + 191469 TGTTGCCCAGCGGCTAGATGTCCACCTGTGGCCCCGTGTCC----ACCTAGGGCCTGAT-GTCCACCTGGGGCAT----------------------G-GTGTTCACCTGA s danRer6.Zv8_NA5594 77680 95 - 181646 --------------TGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCCAGGG-GGCACCCTAGGGCCTATACTGCAAGTCAAGGGACATCG-GTGGACCCCTGG i danRer6.Zv8_NA5594 C 0 C 0 s oryLat2.scaffold877 13345 70 - 77346 -----CCCGTCGGTCTCTTAGATACTGGTGGTCT------------CTCAAGACCTAGT-GGTCTCTCAGGACCT----------------------G-GTGGTCTCTCAG i oryLat2.scaffold877 C 0 C 0 s gasAcu1.chrXIV 6840803 77 + 15246461 ------CCGGCGGCCGGATATCTACCGGCGGCCGGATTTCC----ACCCGCAGCCGGAT-AGCCACCCGCAGCCG----------------------G-ATAGCCACCCGC i gasAcu1.chrXIV C 0 C 0 s xenTro2.scaffold_494 370546 82 - 924072 TGTTCCCCTAGAGTCAAATGTTCCCCTAGAGTCCAGTGTTC----CCCTAGAGACCAGT-GTTCCCCTAGAGTCC----------------------A-GTGTTCCCCTA- i xenTro2.scaffold_494 I 19 C 0 s dipOrd1.scaffold_11667 8881 77 - 40507 tgtctgcctgacgtgtggtgtctgcct---gacgtgtgtct----gcctgacgc---at-gtctgcctgacgtgt----------------------g-gtgtctgcctga i dipOrd1.scaffold_11667 C 0 N 0 s ponAbe2.chrUn 12337774 83 + 72422247 TGTTGCCCAGGGGCTAGATGTCCACCTGTGGCCCTGAGTCC----ACCTAGGGCCTGAT-GTCTACCTGGGGCAT----------------------G-GTGTTCACCTGA i ponAbe2.chrUn C 0 C 0 s petMar1.Contig22977 10782 61 + 15049 ------------------TGTCTACCTGAGA------GTCC----ACCTGGGGCATGAGAGTCCACCTGGGGCAT----------------------GAGAGTCCACCTGG i petMar1.Contig22977 I 1 C 0 s fr2.chrUn 308069829 56 - 400509343 -------------------AGTTCCTCATGGGTC------------CTGAGTTCCTCAT-GGTTCCTGAGTTCCT----------------------C-ATGGGTCCTGAG i fr2.chrUn C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-18149.000000 s hg19.chr4_gl000194_random 13392 28 + 191469 GAC--CCGGGTGTTT--ACATAG--------GGCCTCATG- s ponAbe2.chrUn 12337857 28 + 72422247 GAC--CCGGGTGTTT--ACATAG--------GGCCTGATG- i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370628 28 - 924072 GAG--TCTAATGTTC--CCCTAG--------AGACCAATG- i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 308069885 27 - 400509343 -AT--CTTCATGGTT--CCTGAG--------TTCCTCATG- i fr2.chrUn C 0 I 10 s gasAcu1.chrXIV 6840880 37 + 15246461 -GA--CTGGATATCCAGCTGCAGGTGGGTTTTGTCTGGGG- i gasAcu1.chrXIV C 0 N 0 s oryLat2.scaffold877 13415 35 - 77346 -GA--CCTGGTGGTC--TCTCAGGACCCGTCTGTCTCTTA- i oryLat2.scaffold877 C 0 I 20 s danRer6.Zv8_NA5594 77775 29 - 181646 -GTAGCTTGCTGGGG--TCAGAG--------GGAGTTAGG- i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 10843 28 + 15049 ---GGCATGAGAGTC--CACCTG--------GGCCCAGAGA i petMar1.Contig22977 C 0 I 1 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-26377.000000 s hg19.chr4_gl000194_random 13420 125 + 191469 TCCAGCTGG------------TGCCTAGGTGCCCACTGGGGGCCTTGTGTTAAC----------CTGGGGACT--GGTATCCAGCTGGGTCCTAAT-GACCACCTGGGTTGAATTATTCA-CCTAGAGTTTGGTAATCA-CTTAGGGCTTGA s ponAbe2.chrUn 12337885 125 + 72422247 TCCAGCTGG------------TGCCTAGGTGTCCACTGGGGGCCTTGTGTTAAC----------CTGGGGACT--GGTATCCATCTGGGTCCTAAT-GACAACCTGGGTTGAATTATTCA-CCTAGAGCTTGGTATTCA-CTTAGGGCTTGA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370656 124 - 924072 TTCCCCTAG------------AGTCTA-ATGTTCCCCTAGAGTCTAATGTTCCC----------CTAGAGTCC--AGTGTTCCCCTAGAGTCCAGT-GTTCCCCTAGAGTCCAGTGTTCC-CCTAGAGTCTAATGTTCC-CCTAGAGTCTAA i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 308069922 95 - 400509343 -----------------------TCTTCATGGTTCCTGAGTTCCTCATGGGTCC------------------------------TGAGTTCCTCAT-GGTTCCTGAGTTCCTCATGGGTC-CTGAGATCTTCATGGTTC-CTGAGATCCTC- i fr2.chrUn I 10 C 0 s oryLat2.scaffold877 13470 95 - 77346 -----------------------ACCTGTTGGTCTCTCAAGACCTGGTGGTCTC------------------------------TCAGGACCTGGT-GGTCTCTCAGGACCCGTCGGTCT-CTTAGATACtggtggtct-ctcaggacctg- i oryLat2.scaffold877 I 20 C 0 s danRer6.Zv8_NA5594 77804 104 - 181646 -------------------------TGGAGGGTCAGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGAATA--GA-----AGTGGATGCCTGGG-TAGCTTTGATGGGGTCAGGGGCC-CTTAGGTG-------------GAGGGCCAG- i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 10872 142 + 15049 TCCACCTGGGCCCAGAGAGTCTACCTGAGAGTCCACCTGGGGCATGAGAGTCCA----------CCTGGACCCTGAGAGTCCACCTGGGCCCTGAGAGTTCACCTGGGCCATAAGAGTCCACCTAGGCCATGAGAGTCCACCTCGACCCTGA i petMar1.Contig22977 I 1 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-10661.000000 s hg19.chr4_gl000194_random 13545 74 + 191469 GTGTCAGCCTTGGACCT----------------------GGTGTCCACCTGGGCCTTGGGTATCAAACTAGGGGTTTGGTA-TCCAGTTGAGACATC s ponAbe2.chrUn 12338010 74 + 72422247 GTGTCAGCCTTGGACCC----------------------GGTGTCCACCTGGGCCTTGGGTATCAAACTAGGGGTTTGGTG-TCCAGTTGAGACATC i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 308070017 38 - 400509343 ATGGTTCCTGAGATCCT----------------------CATGGTTCCTGAGTTCCTCAT------------------------------------- i fr2.chrUn C 0 I 26 s oryLat2.scaffold877 13565 54 - 77346 gtggtctctcaggacat----------------------ggtggtctctcaggacctgg-----------------tggtc-tc---tcaggacctg i oryLat2.scaffold877 C 0 C 0 s danRer6.Zv8_NA5594 77908 56 - 181646 GGGGCACCCTGGGGCCTATACTGCCAGACCAGGAAGGGAGGTGGACTCCTGGGTAG----------------------------------------- i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 11014 77 + 15049 GAGTCCACCTGGGGCCA--------------------TGAGAGTCCACCTGGGCCCCGAGAGTCCACCTGGGGCCATGATAGTCCACCTGGGCCATG i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 370780 0 - 924072 C a score=-10456.000000 s hg19.chr4_gl000194_random 13619 93 + 191469 -ATTTGCACCTGGGGTCTGA---------GTGTTCGCATGAGGCCAGATGA-CCACTGGGGGCCTGAATGTCAACCTGGGTTCTGAAAT-TCACTGGAAGCCTAG-- s ponAbe2.chrUn 12338084 93 + 72422247 -ATTTGCACCTGGGGTCTGA---------GTGTTCTCATGAGGCCAGATGA-CCACTGGGGGCCTGAATGTCAACCTGGTGTCTGAAAT-TCACTGAAGGCCTAG-- i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 308070081 91 - 400509343 -AGTTCCTCATGGGTCCTGAGATCTTC--ATGGTTCCTGAGATCCTCATGG-GTCCTGAGTTCCTA---------ATGGTTCCTGAGATCCTCATGGTTCCTGA--- i fr2.chrUn I 26 C 0 s oryLat2.scaffold877 13619 65 - 77346 -----------------------------gtggtctctcaggacctggtgg-tctctcaagacctg---------gtggtctctcaggacctggtggtctctca--- i oryLat2.scaffold877 C 0 C 0 s danRer6.Zv8_NA5594 77964 87 - 181646 -----CTTGCTGGGGTCAGAGATCCCTAGGTGG------AGGGCCAAGGGG-CACCCTGGGGCCTA-----TACTGCAAGTCCAGATACATCAGTGGACACCTG--- i danRer6.Zv8_NA5594 C 0 I 1 s petMar1.Contig22977 11091 97 + 15049 ATAGTCCACCTGGGCCATGA---------TAGTCCACCTGGGCCATGATAGTCCACCTGGGCCATGAGAGTCCACCTGGGACCTGAGAGTCCACCTGGGGCCAT-GA i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 370780 0 - 924072 C a score=-16367.000000 s hg19.chr4_gl000194_random 13712 34 + 191469 GTATCTAG-------CTGGGGCCTGATGTCCAC------------CTGGTACT s ponAbe2.chrUn 12338177 34 + 72422247 GTATCCAC-------CTGGGGTCTGATGTCCAT------------CTGGGACT i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 308070172 33 - 400509343 GTTCCTCATGGTTCCTGAGATCTTCCTGGTTCT-------------------- i fr2.chrUn C 0 N 0 s gasAcu1.chrIX 365467 26 - 20249479 GCATCTAA-------TCAGAACCCAGCGTCCAG-------------------- i gasAcu1.chrIX N 0 I 4 s oryLat2.scaffold877 13684 33 - 77346 ggacctggtggtctctcaGGACCTGGCGGTCTC-------------------- i oryLat2.scaffold877 C 0 I 4 s danRer6.Zv8_NA5594 78052 38 - 181646 GTAGCTAG-------CTGGGGACAGATGCCCCTAGGTGGAGGGCC-------- i danRer6.Zv8_NA5594 I 1 C 0 s xenTro2.scaffold_494 370780 33 - 924072 -TGTTCCC-------CTAGAGTCCAATGTTCCC------------CTAGAGTC i xenTro2.scaffold_494 C 0 C 0 s petMar1.Contig22977 11188 16 + 15049 GAGTCCAC-------CTGGGCCC------------------------------ i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-10475.000000 s hg19.chr4_gl000194_random 13746 104 + 191469 AGGTGTCAACATGTGGCCTGA--TGTAAACCTCTAG-------------TTGAGTGTCCACCTTGGGCCTGA--TGTCCACTG-----GGGGACTGAT-GTTCCCCT-TTGATC-TG-AT-GTCTACCTGG s ponAbe2.chrUn 12338211 104 + 72422247 AGGTGTCAACATGTGGCCTGA--TGTAAACCTCTAG-------------TTCAGTGTCCACCTTGGGCCTGA--TGTCCACTG-----GGGGACTGAT-GTTTACCT-TCGATC-TG-AT-GTTTACCTGG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 370813 104 - 924072 CAGTGTTCCCCTAGAGACCAG--TGTTCCCCTAGAG-------------TCCAGTGTTCCCCTAGAGTCCAG--TGTTCCCCT-----AGAGACCAAT-GTTCCCCT-AGAGTC-CA-GT-GTTCCCCTAG i xenTro2.scaffold_494 C 0 C 0 s gasAcu1.chrIX 365497 90 - 20249479 ------AGCCTAGCGTCCAGT----------CGGAG-------------CCCAGCATCCAGTCGGAGCCTAG--CATCCAGTC-----GGAGCCCAGC-GTCCAGTC-GGAGCC-TA-GC-GTCCAGTCGG i gasAcu1.chrIX I 4 C 0 s oryLat2.scaffold877 13721 90 - 77346 ------GACCTGGTGGTCTCT----------CAGGA-------------CCCGTCggtctctcagagactgg--tggtctctc-----aggacctggt-ggtctctc-aggacc-tg-gt-ggtctctcag i oryLat2.scaffold877 I 4 C 0 s danRer6.Zv8_NA5594 78090 126 - 181646 AGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGGAAAGAGGTGTACCCCTGGGTAGCTTGCTGGGGTCAG--AGGCCCCTAAGTGGAGGGCCAGGG-GGGTACCCTGGGACC-TATAC-TGCAAGTCGA i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 11204 74 + 15049 --------------------------------------------------CGAGAGTCCACCTGGGGCCATGATAGTCCACTG-----GGGCCATGATAGTCCACCT-GGGGCCATG-ATAGTCCACCTGG i petMar1.Contig22977 C 0 I 158 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=4748.000000 s hg19.chr4_gl000194_random 13850 40 + 191469 AAACCGTGTATTCACCCATGGCCT--GATGGTCACCTGGGGT s danRer6.Zv8_NA5594 78216 36 - 181646 GGAAGA-GAAGT-----GGAACCCTGAGTAGCTTGCTGGGGT i danRer6.Zv8_NA5594 C 0 C 0 s oryLat2.scaffold877 13811 39 - 77346 gacctg-gtggtctctcaggacct--ggtggtctctcaggac i oryLat2.scaffold877 C 0 C 0 s gasAcu1.chrIX 365587 39 - 20249479 agccca-gcatccagtcggagccc--agcatccagtcggagc i gasAcu1.chrIX C 0 C 0 s xenTro2.scaffold_494 370917 39 - 924072 AGTCCA-GTGTTCCCCTAGAGTCC--AGTGTTCCCCTAGAGT i xenTro2.scaffold_494 C 0 C 0 s ponAbe2.chrUn 12338315 40 + 72422247 AAACAGTGTATTCACCCACGGCCT--GATGGTCACCTGGGGT i ponAbe2.chrUn C 0 C 0 e petMar1.Contig22977 11278 158 + 15049 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-4365.000000 s hg19.chr4_gl000194_random 13890 133 + 191469 TGAATGTCC---AACTGTGGCCAG-ATGTGCACCCGGATCCTGGGC-------ATCCACCTGGGG----------CCTGATGTTCATCTGGGGCCT--GGAGTTC---ACCTGAGGCACGAT-GTCCACCTGAAGCCTAAT-GTTCATCTGAGCACTGAGT s ponAbe2.chrUn 12338355 125 + 72422247 TGAATGTCC---AACTGTGGCCAG-ATGTGCATCCGGAACCTGGGC-------ATCCACCCAGGG----------CCTGATGCTCAGCTGGGGCCT--GGAGTTC---ACCGGAGGCATGAT-GTCTACCTGAAGCTTAAT-GTTCATCTGAG-------- i ponAbe2.chrUn C 0 I 114 s xenTro2.scaffold_494 370956 126 - 924072 CCAGTGTTC---CCCTAGAGTCCA-GTGTTCCCCTAGAGACC-AGT-------GTTCCCCTAGAG----------TCCAGTGTTCCCCTAGAGTCC--AGTGTTC---CCCTAGAGTCTAAT-GTTCCCCTAGAGTCTAAT-GTTCCCCTA------GAGT i xenTro2.scaffold_494 C 0 C 0 s gasAcu1.chrIX 365626 108 - 20249479 ccagcatcc---agtcggagccca-gcgtccagtcggagccc-agc-------gtccagtcggag----------cccagcgtccagtcggagccc--agcgtcc---agtcggagcccagc-atccagtcggagc------------------------- i gasAcu1.chrIX C 0 C 0 s oryLat2.scaffold877 13850 108 - 77346 CCGTCGGTC---TCTTAGATACTG-GTGGTCTCTCAGGACCT-ATT-------GGTCTCTCAGGA----------CCTGGTGGTCTCTCAGGACCT--GGTGGTC---TCTCAGGACCCGTC-GGTCTCTTAGATA------------------------- i oryLat2.scaffold877 C 0 C 0 s danRer6.Zv8_NA5594 78252 131 - 181646 CAGAGGCCCCTAAGTGGAGGGCCA-GGGGGCACCCTGGGGCT-TATACTGCAAGTCCAGGAAGAGAGGTGGACAACTCGGTAGCTTGATGGGGTCA--GGCGCCTCTAGGTGAAAGGCCGAG-GGGCACCCAGAGG------------------------- i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 11436 138 + 15049 TGAGAGTCC---ACCTAGGCCCTGAGAGTCCACCCGGGCCTTGAGA-------GTCTGCCTGGGC----------CCAGAGAGTCCACCTGGGCCATGAGAGTCC---ACCTGGGGCATGAGAGTCCACCTGGGGCATGAGAGTCCACCTGGGCCATGAGA i petMar1.Contig22977 I 158 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-11710.000000 s hg19.chr4_gl000194_random 14023 121 + 191469 CTAATGTACTCCTGGGTTCT-AGTGTCCTCTTGGGACCT--GATGTCTACCAG-ATCCTG-G--------------TATCCACTTGGGGCCTG-GTATCCACC----TAGGACTTGATATTCACCTGGGGCC----------TGGGAATCCACTT s ponAbe2.chrUn 12338594 103 + 72422247 CTAATGTACTCCTGGGTTCT-AGTGTCCTCTTGGGACCT--GATGTCTACCAGGATCCTG-G--------------TATCCACCTGGGGTCTG-GTATCCACC----TAGGGCT-----------------------------AGGAATCCACTT i ponAbe2.chrUn I 114 C 0 s xenTro2.scaffold_494 371082 113 - 924072 CAAATGTTCCCCTAGAGTCC-AGTGTTCCCCTAGAGTCC--AGTGTTCCCCTAGAGACCA-G--------------TGTTCCCCTAGAGACCA-GTGTTCCCC----TAGAGTCCAGTGTTCCCC------------------TAGAGTCCAGT- i xenTro2.scaffold_494 C 0 C 0 s gasAcu1.chrIX 365734 132 - 20249479 ccagcgtccagtcggacccc-agcatccagtcggagccc--agcatccagtcggagccca-g--------------cGTCCAGTCGGAGCCCA-GCGTCCAGT----CGGAGCCCAGCGTCCAGTCGGAGCCCAGCGTCCAGTCGGAGCCCAGCA i gasAcu1.chrIX C 0 I 7 s oryLat2.scaffold877 13958 125 - 77346 Ctggtggtctctcaggacct-ggtggtctctcaggacat--ggtggtctctcaggacctg-g--------------tggtctctcaggacctg-gtggtctct----cagGACATGGTG-------GTATCTCAGGTCTCTGTTAGAGTTCACTT i oryLat2.scaffold877 C 0 I 1467 s danRer6.Zv8_NA5594 78383 140 - 181646 CCAATACT---GCAAGCCCA-GGGAGGGAGGTGGACCCCTGGGTAGCTTGCTGGGGTCAG-GGTCCCCTAGGTGGAGGGCCAGGGGGCACCCT-GTGGGCTATACTGCAACTCCAGGAAGAGAGGTGGACCCCTGGGT--------AGCTTGCT- i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 11574 103 + 15049 -----GTCCACCTGGGCCATGAGAGTCCACCTGGGGCAT-GAGAATCCACCTGGGGCATGAG--------------AGTCCACATGGGGCATGAGAGTCCACC----TAGGCcc----------------------------tgagagtccacct i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-40893.000000 s hg19.chr4_gl000194_random 14144 187 + 191469 GATAACTGGTGCCCATCAG-----GGTCCT-ATGTTCACCTTG-GGACTGGGTAACCACCTGAGGCCTGA--TGTCCACTTAGGGCAT-AAGTGTTTAGCTG-GGGTCTAGTGTTC--ACATA-GGGTCTGATGTCAACCTTGAGCCCAGGTATTCA---------------------CCAGGAGACT--AGTGTCCAGCTGGGACCAG-ATGTTCACTTGGGGC s ponAbe2.chrUn 12338697 188 + 72422247 CATAACTGGTGCCCATTGG-----GGTCCTGATGTTAACCTTG-GGACTGGGTAACCACCTGAGGCCTGA--TGTCCACTTAGGGCAT-AAGTGTTTATCTG-GGGTCTAGTGTTC--ACATG-GGGCCTGATGTCAACCTTGAGACTAGGTATTCA---------------------CCAGAGGACT--AGTGTCCAGCTGGGGCCAG-ATATTCACTTGGGGC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 371195 175 - 924072 --------GTTCCC-CTAG-----AGTCCA-GTGTTCCCCTAG-AGACC-AGTGTTCCCCTAGAGTCCAG--TGTTCCCCTAGAGT-C-CAGTGTTCCCCTA-GAGTCCAGTGTTC--CCCTA-GAGTCCAGTGTTCCCCTAGAGTCCA-GTGTTCC---------------------CCTAGAGACC--AGTGTTCCCCTAGAGTCCA-ATGTTCCCCTAGAGT i xenTro2.scaffold_494 C 0 T 253 s gasAcu1.chrIX 365873 185 - 20249479 GGAGCCCAGCGTCCAGTCG-----GACCCC-AGCATCCAGTCG-GACCCCAGCGTCCAGTCGGAGCCCAG--CGTCCAGTCGGAGCCC--AGCGTCCAGTCG-GACCCCAGCATCC--AGTCG-GAGCCCAGCGTCCAGTCGGAGCCCG-GCGTCCA---------------------GTCGGAGCCC--AGCATCCAGTCGGAGCCCG-GCGTCCAGTCGGAGC i gasAcu1.chrIX I 7 C 0 s oryLat2.chr20 596611 216 + 24728221 TGACAAGAGCATCTACCTG----AGACAAT-ACCGTCAACCTGAGACAGAAGTATCTA-CCTGAGACAAGATCATCTACCTGAGACAA-GAGCATCTACCTGAGACAAGAGCATCT--ACCTGAGAAAAGATCATCTACCTGAGACAAGTGCATCTaNNNNNNNNNNCAAGATCATCTACCTGAGACAAGAGCATCTACCTGAGACAAGAGCATCTACCTGAGAC i oryLat2.chr20 n 1467 C 0 s danRer6.Zv8_NA5594 78523 189 - 181646 -GGGTTCAGGGGCCCTTAGGTGGAGGGCAA-GGGGGCACCCTG-TGCCTATACTGCAAGTCCAGGAAGAG-------AGGTGGACCCCTGGGTTGCTTGCTGGGGTCAGAGGCCCCTAAGTGGAGGGCCAGGGGGGTACCCTGGG-----GACTTTA---------------------CTGCAAGTCCAGGAAGAGTTGTGGACCCCTGGGTAGCTTGCTGGCGA i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 11677 112 + 15049 -----------------------------------------gg-accctgagagtctacctgag--------agtccacctggtgcat-gagagtccacctggggcatgagagtcc--acctg-gg----------------------------------------------------ccatg-------agagtccacctgggtccagagagtccacctgggcc i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-4507.000000 s hg19.chr4_gl000194_random 14331 17 + 191469 CTG--GTGTCAACTTGAA-----G s ponAbe2.chrUn 12338885 15 + 72422247 CTG--GT--CAACTTGAA-----G i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 552325 22 + 924072 CTG--GTACCAACAGGAACTAGGG i xenTro2.scaffold_494 n 253 C 0 s gasAcu1.chrIX 366058 17 - 20249479 CCG--GCGTCCAGTCGGA-----G i gasAcu1.chrIX C 0 N 0 s oryLat2.chr20 596827 18 + 24728221 AAGA-GCATCTACCTGAG-----A i oryLat2.chr20 C 0 C 0 s danRer6.Zv8_NA5594 78712 19 - 181646 GAGAGGCCACTGGGTGGA-----G i danRer6.Zv8_NA5594 C 0 I 1 s petMar1.Contig22977 11789 18 + 15049 caga-gagtctacctgag-----a i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-15691.000000 s hg19.chr4_gl000194_random 14348 105 + 191469 CATGGTTGTCAACCTAGGACCTGATGT----------CTAGTCCAGTGTCCA--CCTTGGGCCTGTTTAC-TACCCGGGGCCTGTGTGTCCACAT--AGACCCCGATGTCAATCTGGTGC s ponAbe2.chrUn 12338900 105 + 72422247 CATAGTTGTCAACCTAGGACCTGATGT----------CCAGTCCAGTGTCCA--CCTTGGGCCTGTTTTC-TACCCGGGGCCTGTCTGTCCACAT--AGACTCTGGTATCAATCTGGGGC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 552347 95 + 924072 GACGGTTG------TGGGATCTATTAT----------CTGTAATAGTGGGGA--GCTGGAG---ATTTACACATAAGAGGTCTTTCTGT-AATGT--ACAACCCCACG-CTATATGTTGC i xenTro2.scaffold_494 C 0 I 197 s oryLat2.chr20 596845 96 + 24728221 -------------CAAGATCATCTACT----------TGAGACAAGATCATCTACCTGAGACAAGATCATTTACCTGAGACAAGAGCATCTACCT-GAGACAGAAGTATCTACCTGAAAC i oryLat2.chr20 C 0 C 0 s danRer6.Zv8_NA5594 78732 112 - 181646 GCCAGGGGGCACCCTAGGGCCTATACTAAAAGTCCAGGGAGAGAGGTGGACC--CCTG------GGTAGCTTGCTTGGGTCATAGGCTCCTAGGTGGAGGGCCAGGGGGCAACCTGGGGC i danRer6.Zv8_NA5594 I 1 I 3 s petMar1.Contig22977 11807 74 + 15049 -------gtccacctgGGGCATG---------------------AGAGTCCA--CCTGGGGCATGAGAGTCCACCTGGGCCCAGAGAGTCCACCT--GGGCCCAGA-------------- i petMar1.Contig22977 C 0 I 27 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-1952.000000 s hg19.chr4_gl000194_random 14453 72 + 191469 CTGGGTATTTACCGGAGGCCTGGATATTCATTGGTACATTATGTCTACTGGAGTCTTTGT-GTCAATCTGAGC s ponAbe2.chrUn 12339005 72 + 72422247 CTGGGTATTTACCGGGGTCCTGGATATTCATTGGTACATTATGTCTACTGGAGTCTTTGT-GTCAATCTGAGC i ponAbe2.chrUn C 0 C 0 s oryLat2.chr20 596941 56 + 24728221 AAGTGCATTTACCTGAGACAAGAGTATCAA----------------GCTGAGACAAGAGC-ATCTACCTGTGA i oryLat2.chr20 C 0 C 0 s danRer6.Zv8_NA5594 78847 48 - 181646 CACTGCA--------AGTCCAGGGAGATCG----------------GTGGACCCCTGGGT-AGCTTGCAGGGG i danRer6.Zv8_NA5594 I 3 C 0 s petMar1.Contig22977 11908 38 + 15049 -------------------ATGAGAGTCCA----------------CCTGGGGCCATGATAGTCCACCTGGGC i petMar1.Contig22977 I 27 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552442 197 + 924072 I a score=-16037.000000 s hg19.chr4_gl000194_random 14525 197 + 191469 TCTGAT-GTCCACTTAGAGATTGGGTATCCACCTA--AGGCCTG-TT-GTTTACATGGGGC------------CTGTAACACGAGGTTCCAGATGAACTCAGATGTCCA--CCTGAGGCCTGA-TGTCCACCT-GAGTTCTGAG--TGTTAACACAGGGCCTGCTG-------------TCAACCTGGGA---CCTAAGTAT-------------------TTACCTAGGGCCTGGGTGTCCACCTGG--GGCCTGA s ponAbe2.chrUn 12339077 197 + 72422247 TCTGAT-GTCCACCTAGAGATTTGGTATCTACCTA--AGGCCTG-GT-GTTTACATGGGGC------------CTGTAACAGGAGGTCCCAGATGAACTCAGATGTCTA--CCTGAGGCCTGA-TGTCCACCT-GAGTTCTGAG--TGTTTACATAGGGCCTGCTG-------------TCAACTTGGAA---CCTAAGTAT-------------------TTACCTAGGGCCTGGGTGTCCACCTGG--GGCCTGA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 371117 167 - 924072 TCCAGT-GTTCCCCTAGAGACC-AGTGTTCCCCTA--GAGACCA-GT-GTTCCCCTAGAG---------------------------TCCAG-----------TGTTCC--CCTAGAGTCCAG-TGTTCCCCTAGAGTCC--AG--TGTTCCCCTAGAGACCAGTG-------------TTCCCCTAGAG---TCC-AGTGT-------------------TCCCCTAGAGTCC-AGTGTTCCCCTAG--AGTCCAG i xenTro2.scaffold_494 T 253 C 0 s oryLat2.chr20 596997 195 + 24728221 -------------CAAGA------GCATCTACCTG--AGACAAGAGC-ATCTCCCTGAGACAAGATCATTTACCTGAGACAAGAGCATTTAC-CTGAGACAAGAGTATCAACCTGAGACAAGATCATTTTCCT-GAGACAAGAG--CATTTACCTGAGA------------CAAGAGTATCAACCTGAGA---CAAGAGCAT-------------------TTACCTGAGACAAGAGCATCTACCTGA--GACAAGA i oryLat2.chr20 C 0 C 0 s danRer6.Zv8_NA5594 78895 211 - 181646 -------------TCAGA-----GGCCCCTAGGTGGAGGGCCAG-GT-GTTCCCCTGGGGC----CTATATTGCAAGTACAGG------------GAGAGAGGTGAACC--CCTGGG-------TAGCTTGCT-GGGGTGAGAGGCCACTAGGTGGAGGGCCAGTGGGCACCCAGGGGCCTATACTGCAAGTCCAGGGACATCGGTGGACCCCTGGGTAGCTTGCTGGGGTCAGAAGCCCCTAGGTGAAGGGCCAGG i danRer6.Zv8_NA5594 C 0 C 0 s petMar1.Contig22977 11946 157 + 15049 CATGATAGTCCACCTGGGCCATGAGAGCCCACCTG--GGCCATG-ATAGTCCACCTGGGCT-------------------------------------ATGAGAGTCCA--CCTGGGCCATGAGAGTCCACCT-GGGCCATGAG--AG-------------------------------TCCACCTGGGC---CATGAGAGT-------------------CCACCTGGGGCATGAGAGTCCACCTGG--GGCATGA i petMar1.Contig22977 C 0 T 456 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-14821.000000 s hg19.chr4_gl000194_random 14722 89 + 191469 CTTCCAAATAGA---TCTTGTGTCAACAGGTGGCCTGATGTGCACTTTGGGCCTAGGTAACTTCCTGATG-ACTAATGCCCACATGGCTCCTA s danRer6.Zv8_NA5594 79106 83 - 181646 GGGTCCCATGGGGCCTATACTACAAGTCCAGGGAGAGAGGTGGACC-----CCTGGGTAGCTTGCTGGGGTAAGGG-----GCCCCTGGGTGG i danRer6.Zv8_NA5594 C 0 C 0 s oryLat2.chr20 597192 75 + 24728221 CCATCTACCTGAGACAAGAGCATCTACCTGAGACAAGA------------------GCATCTACCTGAGACAAGAGCATCTACCTGAGACAGA i oryLat2.chr20 C 0 C 0 s xenTro2.scaffold_494 371284 21 - 924072 TGTTCCCCTAGAG--TCCAGTGT---------------------------------------------------------------------- i xenTro2.scaffold_494 C 0 I 72 s ponAbe2.chrUn 12339274 89 + 72422247 CTTCCAACTAGA---TCTTGTGTCAACATGGGGCCTGATGTCCACTTTGGGCCTAGGTAACTTCCTGATG-ACTAACGTCCACATGGCTCCTA i ponAbe2.chrUn C 0 C 0 e petMar1.Contig22977 12103 456 + 15049 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-28086.000000 s hg19.chr4_gl000194_random 14811 92 + 191469 AGGAC-------CATCTGAGGCC---TGGTATTAAT-TTAGAGACTGG----TATACAC----CTGGAGTCCAGGTATCCACTTGGGACCTGATGTTCACCTGGAGTGT-----AC s ponAbe2.chrUn 12339363 92 + 72422247 AGGAC-------CATCTGAGGCC---TGGTATTAAT-TTAGAGACTGG----TATCCAT----CTGGAGTCCAGGTATCCACTTGGGACCTGATGTTCACCTGGAGTGT-----AG i ponAbe2.chrUn C 0 C 0 s oryLat2.chr20 597267 95 + 24728221 AGTATC-------TACCTGAGAC---AAGTGCATCTACCTGAGACAAGATCATCTACCTGAGACAAGAGCAT------CTACCTGAGACAAGATCATTTACCTGAGACA-----AG i oryLat2.chr20 C 0 I 3 s danRer6.Zv8_NA5594 79189 92 - 181646 AGGGCCAGGGGGCACCCTGGGGCCTATACTGCAAGT-CCAGGAAGAGAAGTGGATGCCT----GGGTAGCTT--------------GCTGGGGTCAGGCCCCTAGGTGG-----AG i danRer6.Zv8_NA5594 C 0 I 17 s petMar1.Contig22977 11647 70 + 15049 AGAGT------CCACCTAGGCcc---tgagagtcca-cctggaccctgagagtctacct-----gagagtcc--------acctggtgcatga----------------------- i petMar1.Contig22977 T 456 I 386 s fr2.chrUn 307057266 79 - 400509343 ------------CATCCAGAGCC---TGGTCTAGAT-CCAGAGCCTGG----TCTACAT----CCAGAGCCT-------------GGTCTAGATCCAGAGCCTGGGCTAGATCCAG i fr2.chrUn N 0 I 4 s xenTro2.scaffold_494 371377 86 - 924072 ----T-------CCCCTAGAGTC---CAGTGTTCCC-CTAGAGTCCAG----TGTTCCC----CTAGAGTCCAGTGTTCCCCTAGAGACCAG-TGTTCCCCTAGAGTCT-----A- i xenTro2.scaffold_494 I 72 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-39311.000000 s hg19.chr4_gl000194_random 14903 144 + 191469 GAATTCA---------CGTGGGGCCTGGTGTCCAC-CTTGAG-TGTGTGTATCCAATTGAGT-GCTGGTGTCCAC----CTGGAGTCCA-GTGTATAC-CCGGGGACTGA--TGTACAC-ATGGGGCCTGGGCATCCATCTAGGACCTGATA-------TTCAGATAAGGGC s ponAbe2.chrUn 12339455 144 + 72422247 GAATTCA---------TGTGGAGCCTGGTGTCCAC-CTTGAG-TGTGTGTATCCAATTGAGT-GGTGGTGTCCAC----CTGCAGTCCA-GTGTATAC-CTGGGGCCTGA--TGTACAC-ATGGGGCCTGGGCATCCATCTAGGACCTGATG-------TTCAGATAAGGGC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 371463 84 - 924072 ATGTTCC---------CCTAGAGTCAAGTGTTCCC-CTAGAG-T--------------------CCAGTGTTCCC----CTAGAGTCCA-GTGTTCCC-CTAGAGACCAG--TGTTCCC-CTAG------------------------------------------------ i xenTro2.scaffold_494 C 0 C 0 s oryLat2.chr20 597365 152 + 24728221 --ATCTA----------CCTGAGACAGAAGTATCTACCTGAGACAAGTGCATCT-ACCTGAG-ACAAGAGTATTTA---CCTGAGACAG-AAGTATCTACCTGAGACAAG--TGCATCTACCTGAGACAAGATCATCTACCTGAGACAAGAGCATCTACCTGAGACAAGAGC i oryLat2.chr20 I 3 I 1 s danRer6.Zv8_NA5594 79298 149 - 181646 GGGACTATACTGCGAGTCCAGAAAGAGAGGTTGACCCCTGGG-------TAGCTTGCTGGGG-TCAGGGGCCCCTAGGTGGAGGGCCAG-GAGGAAAC-CTGGGGCCTATACTGCAAGT-CCAGAGACA-------TCGGTGGACCCCTGGGTAGCTTGCTGGGGTC----- i danRer6.Zv8_NA5594 I 17 C 0 s fr2.chrUn 307057349 144 - 400509343 TGGTCTAGA-------TCCAGAGCCTGGTCTACAT-CCAGAGCCTGGTCTAGAT--CCAGAG-CCTGGTCTACAT----CCAGAGCCTG-GTCTACAT-CCAGAGCCTGG--TCTACAT-CCAGAGCCTGGTCTATTATCCAGAGCCTGGG--------CTAGATCCAGAGC i fr2.chrUn I 4 I 6 s petMar1.Contig22977 12103 134 + 15049 GAGTCCA---------CCTGGGCCATGAGAGTCCA-CCTGGGCCATGAGAGTCCACCTGGGGCATGAGAGTCCAC----CTGGGCCCTGAGAGTCCAC-CTGGGCATGAG--AGTCCAC-CTGGGGCATGAGAGTCCACCTGGGGCATGAGA-------------------- i petMar1.Contig22977 I 386 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-1997.000000 s hg19.chr4_gl000194_random 15047 20 + 191469 -------------TGGCGTTCTCCTGGCCTGGT s danRer6.Zv8_NA5594 79447 26 - 181646 AGGGGCCCCTGGGTGGAG-------GGCCAGGG i danRer6.Zv8_NA5594 C 0 C 0 s fr2.chrUn 307057499 17 - 400509343 ---------TAGATCCAG-------AGCCTGGG i fr2.chrUn I 6 C 0 s xenTro2.scaffold_494 371547 8 - 924072 -------------------------AGTCCAGT i xenTro2.scaffold_494 C 0 C 0 s ponAbe2.chrUn 12339599 20 + 72422247 -------------TGGAGTTCTCCTGGCCTGGT i ponAbe2.chrUn C 0 C 0 e oryLat2.chr20 597517 1 + 24728221 I e petMar1.Contig22977 12237 0 + 15049 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-11707.000000 s hg19.chr4_gl000194_random 15067 50 + 191469 GTCCACATGGAGCC-TGGA-TATACACTTGGAGCCTGATGT--CCCAGGTGGAT s ponAbe2.chrUn 12339619 50 + 72422247 GTCCACATGGAGCC-TAGG-TGTACAATTGGAGCCTGATGT--CCCAGGTGGAT i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 371555 40 - 924072 GTTCCCCTAGAGTC-CAG--TGTTCCCCTAGAGTCCAGTGT-----------TC i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 307057516 36 - 400509343 CTAGATCCAGAGCC-TGGGCT--AGATCCAGAGCCTG--GT------------- i fr2.chrUn C 0 N 0 s danRer6.Zv8_NA5594 79473 44 - 181646 GGCACCCTGGAGCC-TATACTGCAAGTCGAGG---------AAGAGAAGTGGAC i danRer6.Zv8_NA5594 C 0 N 0 s petMar1.Contig17054 6451 48 + 15935 GTCCACACAGCGACATGGGGGAGGCAACAGCAGCC----GC--TCAGTGCGGCT i petMar1.Contig17054 n 0 I 20 e oryLat2.chr20 597517 1 + 24728221 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=4687.000000 s hg19.chr4_gl000194_random 15117 26 + 191469 ACCTGGGCCCCAGTGGTCATCAGATC s ponAbe2.chrUn 12339669 26 + 72422247 ACCTGGGCCTCAGTGGTCATCAGATC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 39 26 + 25579 ACCGGCCTCCTGAGAGACACCAATCT i ornAna1.Contig11719 N 0 C 0 s xenTro2.scaffold_494 371595 26 - 924072 CCCTAGAGTCCAGTGTTCCCTAGATC i xenTro2.scaffold_494 C 0 C 0 s danRer6.chr3 237390 26 - 60907308 AACTGGACTTCATTGTTCCAGAGACC i danRer6.chr3 N 0 C 0 e oryLat2.chr20 597517 1 + 24728221 I e petMar1.Contig17054 6499 20 + 15935 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=3677.000000 s hg19.chr4_gl000194_random 15143 62 + 191469 CTAGGAAACTCTCAGGCCCCAGGTGCACATAAAGCTCC-------AAGTGACCACCTAGGCCACA-------------GGTT----- s danRer6.chr3 237416 54 - 60907308 ------CACCATCCGACACCTGGACTAGAAAGAGCCAC-------CATCACCCAACTGGA--ATG-------------GGTT----- i danRer6.chr3 C 0 C 0 s ponAbe2.chrUn 12339695 62 + 72422247 CTAGGAAACTCTCAGGCCCCAGGTGCACATAAAGCTCC-------AAGTGGCCACCTAGGCCACA-------------GGTT----- i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 65 86 + 25579 CTGAGAGAC-ATCAGCCCCCTAAGAGACACAGGGCTCCTGAGAGACATTGGCCCCCTGAGAGACATCAGAGAGATCCTGGTCCCTGA i ornAna1.Contig11719 C 0 C 0 e oryLat2.chr20 597517 1 + 24728221 I e petMar1.Contig17054 6499 20 + 15935 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 371621 0 - 924072 C a score=534.000000 s hg19.chr4_gl000194_random 15205 32 + 191469 GATACACAGG---------GTCCAGGTGGACAC--TGGGTGCA s ornAna1.Contig11719 151 32 + 25579 GAGACACAGG---------CCTCACAGAGACAC--CTACTCCT i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12339757 32 + 72422247 GATACACAGG---------GTCCAGGTGGACAC--TGGGTGCA i ponAbe2.chrUn C 0 C 0 s danRer6.chr3 237470 42 - 60907308 GTTACAGAGACCCACCATCCCCCAACTGGATTTCATTGTTCC- i danRer6.chr3 C 0 I 2 s petMar1.Contig17054 6519 32 + 15935 GAAACTTAGA---------CTCGGGGTAGAAAC--GAGACTCA i petMar1.Contig17054 I 20 C 0 e oryLat2.chr20 597517 1 + 24728221 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 371621 0 - 924072 C a score=-9881.000000 s hg19.chr4_gl000194_random 15237 40 + 191469 AGATGAACA--CCAGGCCCCTGGT-G--AACACAAAGCCCCAGGT s ornAna1.Contig11719 183 39 + 25579 AGAGAGACA--CGGGGCCCCGAGA-G---ATGCCATTCCTCGAGA i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12339789 40 + 72422247 AGATGAACA--CCAGGCCCCTGGT-G--AACACCAAGCCCCAGAT i ponAbe2.chrUn C 0 C 0 s oryLat2.chr18 29754498 40 + 29908082 AGACTTGCA--CCAAG-ATCTGGATC--TGCACCCAGACCCAGAT i oryLat2.chr18 n 1 I 28 s danRer6.chr3 237514 41 - 60907308 AGACCCACCATCCGAC-ACCTGGA-C--TACAAAGAGCCACCATC i danRer6.chr3 I 2 I 27 s xenTro2.scaffold_494 371621 28 - 924072 ----------------CCCTTGGT-GGCAACATATAGCGTGGGGT i xenTro2.scaffold_494 C 0 n 0 s petMar1.Contig17054 6551 38 + 15935 GGGTGGACA--CGAGACTCAGGGT-G--GACACGAGACTCAGG-- i petMar1.Contig17054 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-6937.000000 s hg19.chr4_gl000194_random 15277 21 + 191469 GTCTACCTAGTCCTCAAGTGG s ponAbe2.chrUn 12339829 21 + 72422247 GTCTACCTAGTCCTCAAGTGG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 222 18 + 25579 GACAA--TAACCCCCAAG-AG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552639 20 + 924072 GAACA-CTGGACTCTAGGGGA i xenTro2.scaffold_494 I 197 C 0 s oryLat2.chr18 29754566 18 + 29908082 ATCTG---GATCTGCACCCAG i oryLat2.chr18 I 28 C 0 s danRer6.chr3 237582 20 - 60907308 ACCCA-CCATTTCCCAACTAG i danRer6.chr3 I 27 C 0 s petMar1.Contig17054 6589 4 + 15935 -----------------GTGG i petMar1.Contig17054 C 0 I 185 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-4382.000000 s hg19.chr4_gl000194_random 15298 26 + 191469 ACATCAGGCAC---TAG--ATTGACACACAG s danRer6.chr3 237602 25 - 60907308 AC-TTGGTTGT---TTCAGA--GACCCATCA i danRer6.chr3 C 0 C 0 s oryLat2.chr18 29754584 24 + 29908082 AC-CCAGATACAAATCC--A--GACCCA--G i oryLat2.chr18 C 0 C 0 s xenTro2.scaffold_494 552659 24 + 924072 ACACTGGACTC---TAG--G--GGAACACTG i xenTro2.scaffold_494 C 0 C 0 s ornAna1.Contig11719 240 24 + 25579 ACACTGGCCTC---CTA--A--GAGACAGCA i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12339850 26 + 72422247 ACACCAGGCAC---TAG--ATTGACACATAG i ponAbe2.chrUn C 0 C 0 e petMar1.Contig17054 6593 185 + 15935 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-3300.000000 s hg19.chr4_gl000194_random 15324 24 + 191469 G-TACCAGGTGGACATCAGGCTGCA s ponAbe2.chrUn 12339876 24 + 72422247 G-TACCAGGTGGATATCAGGCTGCA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 264 23 + 25579 G-CCCCTGAGAGACATC-TGCTTCC i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552683 25 + 924072 GACTCTAGGGGAACATTGGACTCTA i xenTro2.scaffold_494 C 0 C 0 s oryLat2.chr18 29754608 25 + 29908082 ACCTGCACCAAAACCTGGATCTGCA i oryLat2.chr18 C 0 C 0 s danRer6.chr3 237627 23 - 60907308 ATCCCCAACTAGACTTGG--CTGTT i danRer6.chr3 C 0 C 0 s petMar1.Contig22977 12237 24 + 15049 -GTCCTAACTGGGCATCAGTTTGCA i petMar1.Contig22977 C 0 T 399 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-23814.000000 s hg19.chr4_gl000194_random 15348 93 + 191469 GGTGAACATCAGGCCTCAGGTGGTTGGGTTACTTATAGCATAG---GTGGC--CATCAGGTCCCAGGTCTATATCCACTCCCCACCTGAAAATCAGGA s ponAbe2.chrUn 12339900 92 + 72422247 GGTGAACACCAGGCCCCAGGTGGTTGGGTTACTTATACCATA----GTGGC--CGTCAGGTCCCAGGTCTGTATCCACTCCCCACCTGAAAATCATGA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 287 83 + 25579 GAGAGACA-CAGGCCTCA-----CAGAGACACCTACTCC-TAG---AGAGA--CACAGGACCCCAAG---AGATGCCAAGCCCACGAGAGACACTGAC i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552708 67 + 924072 GGGGAACATTGGACTCTAGG-----GGAACACTGGTCTC-TAG---GGGAA--CACTGGACTCTAGG--------------------GGAACACTGGA i xenTro2.scaffold_494 C 0 T 305 s oryLat2.chr18 29754633 66 + 29908082 CCATGATC-CAGACATTA------ATCCAGACCTGCACCAAAACCTGGATCTGCACCATTACCCAGA-------------C-------ATTAA----- i oryLat2.chr18 C 0 C 0 s danRer6.chr3 237650 65 - 60907308 TCAGAAAC-C---CACCA------TTCGACACCTGGACTAGAA---AGAGC--CACCATCGCCCAAA-------------CTGACTTGGTTGT----- i danRer6.chr3 C 0 C 0 e petMar1.Contig22977 12261 399 + 15049 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-2063.000000 s hg19.chr4_gl000194_random 15441 54 + 191469 TCCAGGTGGATACC------CATATTCTAGGTGAACACCAGTTTCCAAATGGACATCAGG s ponAbe2.chrUn 12339992 52 + 72422247 TCCAGGTGGATACC------CATGTCCTA-GTGAACACCAGGTTCCAAAT-GACATCAAG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 370 52 + 25579 CCCCGAGAGACATC------AGCCTCCTG-AGAGACACCAATCTCTGAGA-GACATCAGC i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552470 53 + 924072 TCTAGGGGAACACT------GGACTCTAG-GGGAACACTGGACTCTAGGGGAACACTGGA i xenTro2.scaffold_494 T 305 I 32 s oryLat2.chr18 29754699 55 + 29908082 TCCAGACCCAGACCTGCACCAAAACCTGG-ATCTGCACCATTACCCA----GACATTAAT i oryLat2.chr18 C 0 n 0 s danRer6.chr3 237715 28 - 60907308 TTCAG----AGACC---------------------CACCATTCCCCA-------ACTGGA i danRer6.chr3 C 0 I 7 e petMar1.Contig22977 12261 399 + 15049 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-11979.000000 s hg19.chr4_gl000194_random 15495 16 + 191469 CTCCAAGTGAAC----ACA-----------------C s xenTro2.scaffold_494 552555 1 + 924072 ------------------------------------T i xenTro2.scaffold_494 I 32 C 0 s danRer6.chr3 237750 24 - 60907308 -------------GTTCCAGAGACCCGCCATCCCCCA i danRer6.chr3 I 7 C 0 s oryLat2.scaffold877 63259 37 + 77346 CGCTAAGTGAACTCTAACAGAGACCTGAGATACCACC i oryLat2.scaffold877 n 0 C 0 s ornAna1.Contig11719 422 13 + 25579 TCCCGAGAG-------ACA-----------------C i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12340044 15 + 72422247 CTCC-AGTGAAC----ACA-----------------C i ponAbe2.chrUn C 0 C 0 e petMar1.Contig22977 12261 399 + 15049 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-6974.000000 s hg19.chr4_gl000194_random 15511 57 + 191469 A-----------GGCCCCAGTTCAATACCAGC-CTCAGGTAGACATCAGGACCCA----GGTGGACC--CCAGGC s ponAbe2.chrUn 12340059 57 + 72422247 A-----------GGCACCAGTTCAATACCAGC-CTCAGGTAGACATCAGGACCCA----GGTGGACC--CCAGGC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 435 58 + 25579 A-----------GGCCTCACAGAGACACCTACTCCTAGAGAGACACCGGCCCCCC----ACAGAGAC--ATAAGT i ornAna1.Contig11719 C 0 C 0 s oryLat2.scaffold877 63296 58 + 77346 A-----------TGTCctgagagaccaccaggtcctgagagaccaccaggtcctg----agagacca--ccatgt i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 237774 71 - 60907308 AATGGACTTAGTTGTTCTAGAGACCCACCATCACCT----AACTAATATGGGTTGTTTCAGAGACCAAGCATCCC i danRer6.chr3 C 0 C 0 s xenTro2.scaffold_494 552556 58 + 924072 G-----------GACTCTAGGGGAACACTGGACTCTAGGGGAACACTTGACTCTA----GGGGAACA--TTAGAC i xenTro2.scaffold_494 C 0 C 0 s petMar1.Contig17054 6778 58 + 15935 A-----------GACTCGGGGTAGAAACGAGACTCAGGGTGGACACGAGACTCGG----GATGGACA--CGAGAC i petMar1.Contig17054 I 185 I 138 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-43654.000000 s hg19.chr4_gl000194_random 15568 159 + 191469 CCAATGTGCATGCC------TAGTCTCTTGGAATACATCATTTTCAAGATGGACACCCA-GATTCCTCGT--AGAC-ATCTGGT------------------------GCCAGGTGGATATCTGGCTGCAG--GAGGACATCAGGCCCCAGGTGG-AGAC----CCAGTACACAGGTGTAAATCAGG-----------CTCCAGTATTTCA s ponAbe2.chrUn 12340116 159 + 72422247 CCAATGTACATGCC------TAGTCTCTTGGAATACATCATTTTCAAGGTGGACACCCA-GATTCTTCGT--AGAC-ATCTGGT------------------------GCCAGGTGGATATCTGGCTGCAG--GTGGACATCAGGCCCCATGTGG-AGAC----CCAGTACACAGGTGTAAATCAGG-----------CTCCAGTATTTCA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 493 132 + 25579 CTCCTGAGAGGCAC------CGGCCCCCTGAGAGACATCAATCTGA-----GAGACAGT-GGCCCCTGAG--AGAC-AGAGGGC-------------------------TCACAGAGACACCTGCTCCTAG--AGAGACATGGGACCCCGAGAGA-TG------CCAATCCATGAGAGACA------------------------------ i ornAna1.Contig11719 C 0 C 0 s oryLat2.scaffold877 63354 156 + 77346 cctgagagac-cac------caggtcctgagagaccaccaGTATCTAA---GAGACCGACGGGTCCTGAG--AGACCACCAGGT------------------------CCTGAGAGACCACCAGGTCCTGA--GAGACCAATAGGTCCTGAGAGA-CCA-----CCAGTATCTAAGAGACCGACGGgt----------cctgagaga-cca i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 237845 162 - 60907308 CCCGCTGGAC-TTCGG----CATTTTCCAACTAGACTTGGCTGTTTAG---AAGACCCACCATTCCCCAATTAGACTTAATTGT------------------------TTCAGAGGCTCACCATGCCCCAACTAGAGTTAATTGTT--TGAGAGGCCCA-----CCGTTACCCAACTG--TAGTGGGTT--------GTTTCAGAGACCCA i danRer6.chr3 C 0 C 0 s xenTro2.scaffold_494 552614 139 + 924072 TCTAGGGGAA-CAC------TGGTCTCTAGGGGAACACTGGACTCTAGGGGAACACTG--GACTCTAGGG--GAAC-ACTGGAC------------------------TCTAGGGGAACATTGGACTCTAG--GGGAACATTGGACTCTAGGGGA-ACA-----CTGGTCTCTAGGGGAACAC---------------------------- i xenTro2.scaffold_494 C 0 T 216 s petMar1.Contig17054 6974 192 + 15935 TCGGGGTGGA-CACGAGACTTAGACTCGGGGTAGAAACGAGACTCAGGGTGGACACAA--GACTCGGGAT--GGAC-ACTAGACTTAAACTTGGGGTAGAAACGAGACTCCGGGTGGACA-CAGACTCGGG--ATGGACACGAGACTCGGGGGTG-ACACGAGACTTAGACTCGGGGTAGAAACGAGACNNNNNNNNNNtcc--------- i petMar1.Contig17054 I 138 T 330 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-5760.000000 s hg19.chr4_gl000194_random 15727 54 + 191469 TCAGGCCCCAGCTAAACACTTGACTAAAGGTGTGCATCAAGACCCAGGTTGA----CA- s ponAbe2.chrUn 12340275 54 + 72422247 TCAGGTCCGAGTTAAACACTTGACTAAAGGTGTGCATCAAGACCCGGGTTGA----CA- i ponAbe2.chrUn C 0 C 0 s oryLat2.scaffold877 63510 52 + 77346 ccaggtcctgagagaccaccaggtcctgagagaccaccaggtcctgagagac------- i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 238007 45 - 60907308 CCATCCCCCAACTGG--AATGGGTTGTTCCAGAGAACCACCATCCGA------------ i danRer6.chr3 C 0 C 0 s petMar1.Contig17054 6836 59 + 15935 TTAGACTCGGGGTAGAAACGAGACTCAGGGTGGACACGAGACTCGGGGTAGAAACGAAA i petMar1.Contig17054 T 330 I 857 s xenTro2.scaffold_494 552537 51 + 924072 -TGGTCTCTAGGGGAACACTGGACTCTAGGGGAACACTGGACTCTAGGGGAA------- i xenTro2.scaffold_494 T 216 T 144 s ornAna1.Contig11719 625 50 + 25579 -CTGACCCCCGAGAGACACCAATCTGAGAG---ACATCAGCCCCCTGAGAGA----CA- i ornAna1.Contig11719 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-21748.000000 s hg19.chr4_gl000194_random 15781 97 + 191469 CCCAGGCTTCA--GTGCACACTAGGCCCAAAGTGT-ACACCTGTGCCA---AGGTGGGCAT--CAGGCCCAAGGTGTACAC-CAGACTCCAAGTGGAC---------ATCAGGTT s ponAbe2.chrUn 12340329 92 + 72422247 TCCAGGCTTCA-GGTGCACACTAGGCCCAAAGTGT-ACACCCATGCCC---AGGTGGGCAT--CAGGCCCAAGGTGTACAC-CAGACCCCAAGTGGAC---------AT------ i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 675 81 + 25579 --CAGGCGTCTTGAGAGACACTGGCCCCTGAGAG--ACATC----------AGAGAGACAC--CGGGCCCCAAGAG-ACA--CAGGCCTCACAGAGAC---------AC------ i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552444 92 + 924072 CCAAGGGGATCTAGGGAACACTGGACTCTAGGGGA-ACACTGGACTCT---AGGGGAACAC--TGGACTCTAGGGGAACAC-TGGACTCTAGGGGAAC---------A------- i xenTro2.scaffold_494 T 144 I 360 s oryLat2.scaffold877 63562 81 + 77346 ------------------caccaggtcctgagaga-ccaccagtctctgagagaccGACG-----GGTCCTGAGAGACCAC-CAGGTCCT-GAGAGACCGCCAGGTC-------- i oryLat2.scaffold877 C 0 I 11 s danRer6.chr3 238052 55 - 60907308 ------------------CACCTGGACTAGAAAGAGCCACCATCCCCT---AAACTGACGT----GGTTGTTA------------------CAGAGAC----------------- i danRer6.chr3 C 0 I 3 s petMar1.Contig22977 2763 88 - 15049 CCCAAGCTTCAGAAAACAAAC-------AGAATGC-AAACTGATGCCC---AGTTAGGACTCTCATGCCCCAGGTGGACTCTCATGCCCCAGGTGGAC---------T------- i petMar1.Contig22977 n 857 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-53158.000000 s hg19.chr4_gl000194_random 15878 192 + 191469 CCAGGTTCCAGGTTGACAC-CAGTCTCTAAGTAGATCCTTAAG---CCCCAATTGG-TCATCAGGCCCA------AGGTG-----------GA-----TAGATTGACCCCAGGAGGTCTCCAG-GTCCCAGG--------CAGGCCTCAGGTGGACAC-TAAGCCCTAGATTAACACAAG-GTCTGAGA--TGGTTTCAGCCCCTGTGTGGACTTTAGT--CATAAGGA------GCTTA s ponAbe2.chrUn 12340421 191 + 72422247 -CAGGTTCCAGGTTGACAC-CAGTCTCTAGGTAGATCCTTAGG---CCCCAATTGG-TCATCAGGCCCA------GGGTG-----------GA-----TACCTTGACCCCAGGGGGTCACCAG-GTCCCAGG--------CAGGCCTCAGATGGACAC-TAAGCCCTAGGTTAACACAAG-GTCTGAGA--TGGTTTCAGCCTCCATGTGGACTTTAGT--CATAAGGA------GCTTA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 756 162 + 25579 -C---TCCTAGAGAGACAC-CAATCCATGAG-AGACACCTGAGAGACACCAAT----CCATGAGAGACACCCGAGAGATGCCAATCCATGAGA-----GACACTGACCCCCGAGAGACACC---------------------GGCCCCTGAGAGACAC-CAATC------------------TCTGAGA---GACATCAGCCCCCTGAGAGACATTGGC--C------------------ i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552896 113 + 924072 CTGGACTCTAGGGGAACAC-TGGTCTCTAGG-GGAACACTGGT---CTCTAGG--------------------------------------GG-----AACACTG-------------------------------------GACTCTAGGGGAACAC-TGGAC------------------TCTAGGG--GAACATTTGACTCTAGGGGAACATTAGA--------------------- i xenTro2.scaffold_494 I 360 C 0 s oryLat2.scaffold877 63654 198 + 77346 ccaggtcctgagagaccac-caggtcctgag-agaccaccagg---tcttgagaga-ccaccaggtcct----------------------gagagaccaccaggtcctgagaga-ccaccag-gtcctgaga-gaccaccatgtcctgagagaccac-caggtcctgagagaccaccaGTATCTAAGA--GACCGACGGGTCCTGAGAGACCACCAGG--TCCTGAGA------GACCA i oryLat2.scaffold877 I 11 n 11 s danRer6.chr3 238110 175 - 60907308 CCATCCCCCAACTGGACTT-CATTGTTCCAG-AGAC---------------------CCACCA---TCT----------------------GA-----CACCTGGACTACAAAGAGCCACCATCGCCCAAACT-GACTTAGTTGTTCCAGAGACCCAC-CATCACCCAACTAAAATGGGTTGTTTCAGA--GACCCATCATACCC------CCGCTGGA--CTTCGGCATTATCCAACTA i danRer6.chr3 I 3 I 2 s petMar1.Contig22977 2851 209 - 15049 CTCATGCCCAGGTGGACTCTCAGGGCCCAGGTGGACTCTCATG---CCCCAGGTGGACTCTCATGGCCC------AGGTG-----------GA-----CTCTCATGGCCCAGGTGGACTCTCATGCCCCAGGTGGACTCTCATGCCCCAGGTGGACTCTCATGGCCCAGGTGGACTCTCATGGCCCAGGTGGACTCTCATGGCCCAGGTGGACTCTCATAGCCCAGGTG------GACTA i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-20350.000000 s hg19.chr4_gl000194_random 16070 76 + 191469 CCTA----GGCCCTAAGAGGACATCAGGTCCCAGGTTGACA-CAATGAACCATGTAGA--AG---TCAGGCTCTAAGTAGACACCC s ponAbe2.chrUn 12340612 77 + 72422247 CCTA----GGCCCTAAGTGGACATCAGGCCCCAGGTTGACATCAATGAACCATGTAGA--AG---TCAGGCTCTAAGTAGACACCC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 918 60 + 25579 ----------CCCTGAGA-GACATCA---------TAGAGA-CAGCGGCCCCCGAGAG--AT---ATGGGCCTCACAGAGATACCT i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553009 31 + 924072 ----------CTCTAGGGGAACATTAGACTCTAGGGGAACA--------------------------------------------- i xenTro2.scaffold_494 C 0 I 20 s oryLat2.scaffold877 15550 77 - 77346 CCCA----TGTCCTGAACCAGCCCTGTGTCCCAAACCGGCTCCCATGTCCCAAACCGG--GC---CCATGTCCCAAACAGGCCCCC i oryLat2.scaffold877 I 1467 C 0 s danRer6.chr3 238287 79 - 60907308 CTTGGC--TGTTTAGAAGACCCACCATTTCCCAATTAGACTAAATTGTTTCAGA---G--GCCCACCATGCCCCAACTAGAGTTAA i danRer6.chr3 I 2 C 0 s petMar1.Contig22977 3060 79 - 15049 ----TCATGGCCCAGGTGGGCTCTCATGGCCCAGGTGGACTATCATGGCCCAGGTGGACTAT---CATGGCCCCAGGTGGACTCTC i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-20797.000000 s hg19.chr4_gl000194_random 16146 92 + 191469 AGGCCCTAGGTAAATAC------------TTTGGTCCCAAG--CCAAC-ATCAGGCCCT-ATGTG-GACACCCAGACTCCAGG-CAGATGTCAGGCCCC-AGGTGAACACT s ponAbe2.chrUn 12340689 92 + 72422247 AGGCCCTAGGTAAATAC------------TTTGGTCCCAAG--CCGAC-ATCAGGCCCT-ATGTG-GACACCCAGACTCCAGG-CAGATGTCAGGCCCC-ACGTGAACACT i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 978 68 + 25579 A-CTCCTAGAGAGACA-------------TGGGACCCCGAG-----AG-ATCCCAATCA-ATGAGAGACACC--------------GATGTCCG--------AGAGACACC i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553060 90 + 924072 GGACTCTAGGGGAACA-------------CTGGTCTCTAGG--GGAAC-ACTGGACTCT-AGGGG-AACACT-GGACTCTAGG-GGAACACTGGACTCT-AGGGGAACACT i xenTro2.scaffold_494 I 20 C 0 s oryLat2.scaffold877 15627 75 - 77346 -------------------------------ATGTCCTAAACCGGCCC--CCATGTCCCAAACCG-GGC--CCATGTCCCATACAGGCCCCCGTGTCCCAAACCGGCCCCT i oryLat2.scaffold877 C 0 I 18 s danRer6.chr3 238366 73 - 60907308 -------------------------------TTGTTTCAGA--GGCCC-ACCATACCCC-AACTG-GACAAACTTGTTCCAGA-AACCCGCCATCGCCC-AACTGGACTTT i danRer6.chr3 C 0 C 0 s petMar1.Contig22977 3139 106 - 15049 ATGCCCCAGGTGGACTCTCAGGTAGACTTTCTGGGCCCAGG--TGGACTCTCTGGGCCC-AGGTG-GACTCTCATGCCCCAGGTGGACTCTCATGCCCc-aggtggactct i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-43463.000000 s hg19.chr4_gl000194_random 16238 70 + 191469 --------------GA--ACTCAGGGTGGTCATCAG--GCCCT---AGGTTGACACATAGGCCAC-AGGTAGACAACAGGCATAGGTGAACT s ponAbe2.chrUn 12340781 70 + 72422247 --------------GA--ACTCAGGGTTGTCATCAG--GCCCT---ACGTTGACACATAGGCCTC-AGGTAGACAATAGGCCGAGGTGAACT i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1046 57 + 25579 --------------GG--CCTCCAGAGAGACATCAG--CCCCC---TGA--GAGACACAGGCCTC-ACAGAGACACC-----------TACT i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553150 52 + 924072 --------------GG--ACTCTAGGGGAACACTGG--ACTCT---AGG--GGAACATTGGTCTCTAGGGGAACA----------------- i xenTro2.scaffold_494 C 0 T 504 s fr2.chrUn 92439108 55 + 400509343 --------------GTTGGTGCTGAACATGCACGAGAACGTCACAGAACCAGGAAGAT---CTCA-GGA-----ACCA-------------- i fr2.chrUn N 0 C 0 s oryLat2.scaffold877 15720 54 - 77346 --------------AT--GTCCATAACTGGCCCCCG--TGTCCCA-AACCGGGCCCAT---GTCC-CAA-----ACCAGCCC---------- i oryLat2.scaffold877 I 18 I 5 s danRer6.chr3 238439 61 - 60907308 --------------GTT-GTTCCAAAGACCCACCAT--CCTCC---AACTAGACATGTTTGTTCC-AGAGACCCACCATCCT---------- i danRer6.chr3 C 0 I 19 s petMar1.Contig22977 3245 67 - 15049 caggtagactctctgg--gcccaggtggactctctg--gaccc---aggtggactctcatggccc-aggtggact----------------- i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-55086.000000 s hg19.chr4_gl000194_random 16308 112 + 191469 TCAGGCTAAATATGAACGTCGGGCTCCAGGA-AGAAGTCTGTGCCCCAG------------TTAAACACCGGGTCTTA--GG--------TAGACA-TCAGGCCTCAAAT-GGATGCCCAGGCCCCAGGTGGATATA- s ponAbe2.chrUn 12340851 112 + 72422247 TCAGGCTCCAGATGAACATCGGGCTCCAGGA-AGAAGTCTGTGCCCCAG------------TTAAACACCTGGTCTTA--GG--------TAGACA-TCAGGCCTCAAAT-GGATGCCCAGGCCCCAGGTGTATACA- i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1103 99 + 25579 CC------TAGAGAGACACCGGGCCCTAACAGAGACATCAGTCTCCCAA-------------GAGACACTGGCCCCCT--GA--------GAGACA-TCAATC--------AGAGACCCTGGCCCCTGAGAGACACA- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552698 74 + 924072 TTGGACTCTAGGGGAACATTGGACTCTAGGG--------------------------------GAACACTGGTCTCTA--GG--------GGAACA---------------------CTGGACTCTAGGGGAACACT- i xenTro2.scaffold_494 T 504 C 0 s fr2.chrUn 92439163 101 + 400509343 TGAGGAACT---CAGGAACCATG---------AGGATCTCA-----------GGAACCAT-TAGGAACTCAGGACCCA--TG--------AGGATC-TCAGGAACCATGA-AGATCTCAGGACCCATGAGGAACTCA- i fr2.chrUn C 0 C 0 s oryLat2.scaffold877 15779 129 - 77346 TTCAAAACT----GGCCCCCATGTCCCAAAC-CGGCTCCCATGTCCCAAACCggccccatgtcccaaaccgggcccca--tgtcccaaactggccc-ccatgttccaaactggcccccatgTCACAAACTGGCCCCA- i oryLat2.scaffold877 I 5 C 0 s danRer6.chr3 238519 122 - 60907308 CCAGAGACC-------CACCGTGACCCAAGA-GGAATGGGTTGTTTCAGAGACCCGCCATCCCTCAAAT--GGACTTAGTTGTTCCAG--AGACCCACCATCACCCAACTAAAATGGGTTGTTTCA---GAGACCCA- i danRer6.chr3 I 19 C 0 s petMar1.Contig22977 3312 91 - 15049 -----------------ctcatgccccaggt-ggactctcatgcaccag------------------gtggactctca--gg--------tagactctcagggtccaggt-ggactctcaggGCCTAGGTGGACTCTC i petMar1.Contig22977 C 0 T 637 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-83216.000000 s hg19.chr4_gl000194_random 16420 129 + 191469 AGGCCTCAGG-------------------------------CAAACAC---CAGATCCCA-GGTAGAC-----------ATT-AGGCAC---AAGATGGACACTCAGGCCACAAGTGAACATCTGTTCCCAGA-TGGACAT---CCAT-CCCAAGGTGGAC-ATCAGGCC---AGAGATGTACACCCA s ponAbe2.chrUn 12340963 129 + 72422247 AGGCCTCAGG-------------------------------CAAACAC---CAGGCCCCA-GGTAGAC-----------ATT-AGACAC---AAGATGGACATTCAGGCCACAAGTGAACGTCTGTCCCCAGG-TGGACAT---CCAT-CCCAAGATGGAC-ATCAGGCC---AGAGATGTACACCCA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1202 123 + 25579 GGGCCTCACA-------------------------------GAGACAC---CTACTCCTA-GAGAGAC-----------ACG-GGACCCTGAGAGATG-----CCAATCAATGAGAG-ACATTGACCCCCAAG--AGACAC---CGGC-CTCCTGAGAGAC-ACCAATCTCTGAGAGACAT-----CA i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552772 73 + 924072 GGACTCTAGG-------------------------------GGAACAC---TGGACTCTA-GGGGAAC-----------ACT-GGACTC----------------------TAGGGGAACACTGGACTCTAGG-GGAACAC---TG------------------------------------------ i xenTro2.scaffold_494 C 0 T 252 s fr2.chrUn 92439264 108 + 400509343 GGAACCATGA--------------------------------GGATCT---CAGGAACCATGAGGAAC-----------TCA-GGAACC---ATGAGGATCTCAGGAACCATGA--GGATCTCAGGAACCATG-AAGATCT---CAGG-ACCCATGAGGAA-CTCA---------------------- i fr2.chrUn C 0 C 0 s oryLat2.scaffold877 15908 113 - 77346 ATGTCCCAAA------------------------------CTGGCCCC---CATGTCCTA-----AACACGCCCCCATGTCC-TGAACC---AGCCCTGTGTCCCAAACCA------GCCCCCATGTCCCAAACCGGCCCC---CAAG-TCCCAAACCGGG-CCCA---------------------- i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 238641 100 - 60907308 CCATCCCCCCG-----------------------------TTGGACTTCGGCATTACCCA-----ACT-----------------AGAT---ATGGCTGTTTAGAAGACCC---------ACCATCCTCCAAC-TGGACATGGACAAT-CCTCGAACTGGT-CATG---------------------- i danRer6.chr3 C 0 C 0 s petMar1.Contig22977 2766 145 - 15049 AAGCTTCAGAAAACAAACAGAATGCAAACTGATGCCCAGTTAGGACTC--TCATGCCCCA-GGTGGAC-----------TCTCATGCCC---CAGGTGGACTCTCATGCCCAGGTGGACTCTCAGGGCCCAGG-TGGACTC---TCATGCCCCAGGTGGACTCTCA---------------------- i petMar1.Contig22977 T 637 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=316.000000 s hg19.chr4_gl000194_random 16549 45 + 191469 -GGCCCCAGGAGAACC--CCAGGCCCCAGGAGGACACTCAAGCGCCAG s ponAbe2.chrUn 12341092 45 + 72422247 -GGCCCCAGGAGAACC--CCGGGCCCCAGGAGGACACTCAAGCACCAG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1325 42 + 25579 -GCTCCCGCGAGA--C--ACAGGTCTCACAGAGACACCTATTC-CTAG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552593 44 + 924072 -GACTCTAGGGGAACA--TTAGACTCTAGGGGAACACTGGTCT-CTAG i xenTro2.scaffold_494 T 252 C 0 s fr2.chrUn 92439372 32 + 400509343 -GGAACCATGAGGAAC--TCAGGACCCATGAGG-------------AA i fr2.chrUn C 0 C 0 s oryLat2.scaffold877 16021 45 - 77346 -TGTTCCAAACCGggc--ccatgtcccaaactggcccccatgtcccaa i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 238741 42 - 60907308 -AGTTTTCCAGAGACCCGCCATCGCCCAAGAGG-----AATGTGTTGT i danRer6.chr3 C 0 C 0 s petMar1.Contig22977 2911 46 - 15049 TGGCCCAGGTGGACTC--TCATGGCCCAGGTGGACTCTCATGCCCCAG i petMar1.Contig22977 C 0 I 626 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-16628.000000 s hg19.chr4_gl000194_random 16594 21 + 191469 AA-GGACACCCAGTCCCTAGGT s ponAbe2.chrUn 12341137 21 + 72422247 AA-GAACACCCAGTCCCTAGGT i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1367 14 + 25579 AG-AGACACC--GGCCC----- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552637 9 + 924072 GG-GAACACT------------ i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 92439404 14 + 400509343 CTCAGGAACCATG--------A i fr2.chrUn C 0 C 0 s oryLat2.scaffold877 16066 22 - 77346 accggcccccatgtcccaaacc i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 238783 10 - 60907308 TTCAGAGACC------------ i danRer6.chr3 C 0 C 0 s petMar1.Contig22977 3583 21 - 15049 GT-GGACTCTCAGGGCCTAGGT i petMar1.Contig22977 I 626 I 149 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-39584.000000 s hg19.chr4_gl000194_random 16615 93 + 191469 AACTAAAAGGCCCCAAGTGGACATGATGTTCCAGATGGATATGAGGCCCC------AAGTGGATACTA--GGCCCAG--GTGGACCCCAGGCCTCAGGGGCAC- s ponAbe2.chrUn 12341158 91 + 72422247 AACTACAAGGCCCCAAGTGGACATGATGTTCCAGATGGATATGAGGCCCC------AAGTGGATACTA--GGCCCAG--GTGGACCCCA-GTCTCA-GGGCAC- i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1381 77 + 25579 ----------CCCCACAGAGACATCAGTCTCCTGAGAGACACTGGCCTCT------GAG-AGACATCA--ATCAGA------GACACCG-GCCCCGGAGAGAC- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552646 15 + 924072 ---------------------------------------------------------------------------------GGACTCTA-G------GGGAAC- i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 92439418 94 + 400509343 AGATCTCAGGACCCATGAGGAACTCAGGAACCATGAAGATCTCAGGACCCATGAGGAACTCAGGAACCATG--------AGGAACTCAG-GACCCATGAGGAA- i fr2.chrUn C 0 C 0 s oryLat2.scaffold877 16088 96 - 77346 ggcccccatgtcccaaaccgggcccatgtcccaaaccGCgcccatgtccc------aaaccggcccccatgtcccaaactggcccccat-gtcccaaaccggc- i oryLat2.scaffold877 C 0 C 0 s danRer6.chr3 238793 91 - 60907308 ---CACCATCCCCCAACTGGACAACCTGTTCCAGAGACCCACCAACCCCC------AAATGGACTTTGTTGTTCCAA--AGACCCACCA-TCCCCCAACTGCA- i danRer6.chr3 C 0 I 124 s petMar1.Contig17054 7752 94 + 15935 GGACACGAGACTCAGGGTGGACACGAGACTAAGGGTGGACACGAGACTCA------GGGTGGACACGA--GACTCAGG-GTGGACACGA-GACTCGGGGTGGAC i petMar1.Contig17054 I 857 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-9322.000000 s hg19.chr4_gl000194_random 16708 88 + 191469 ACCAGGCCCCAGGGGAACACCAGGCCCTGGGTAAGCATGCAGTCCCAGGTGGAC--ATCAGGTGCCA------GGAGGACACCAGGACCCAGTTGG s ponAbe2.chrUn 12341249 88 + 72422247 ACCAGGCCCCAGGGGAACACCAGGCCCTAGGTAAGCATGCAGTCCCAGGTGGAT--ATCAGGTGCCA------GGAAGACACCAGGACCCAGTTGG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1458 80 + 25579 A-CAGGCCTCATAGAGACAC----TCCTAGAGAGACACAGGACCCCGAG----------AGATGCCAATCCACGAGAGACACT-GAACCCCGAGAG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 552661 74 + 924072 ACTGGACTCTAGGGGAACACTGGACTCTAGGGGAACATTGGACTCTAGGGGAAC--ATTGGACTCTA------GGGGAACAC-------------- i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 92439512 70 + 400509343 ------CTCAGGAACCATGA--GGATCTCAGGAACCATGAGGATCTCAGGAACC--ATGAGGAACT----------------CAGGACCCATGAGG i fr2.chrUn C 0 I 23 s oryLat2.scaffold877 16184 74 - 77346 ------ccccatgtccaaaactggcccccatgtcccaaactggcccccatgtcctaaacaggcccc----------------catgtcccaaaccg i oryLat2.scaffold877 C 0 I 2 s petMar1.Contig17054 7846 88 + 15935 ACAAGACTCGGGGTGGACACGAGACTCAGGGTGGGCACGTGACTCGGGATGGAC--ACGAGACTCGG------GGTGGACACGAGACTCAGGGTGG i petMar1.Contig17054 C 0 C 0 e danRer6.chr3 238884 124 - 60907308 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-9313.000000 s hg19.chr4_gl000194_random 16796 93 + 191469 TCATCAAGCCACAGCTGAACACCAGTTCCCCA--TGAACACCA-GTCCTCAGGTG-----GGCACCTAG-------TCCTCCCGTGTGCATCAG---GTGCCAGGCTGACA s ornAna1.Contig11719 1538 107 + 25579 ACACCGGCCTCCTGAGAGACATTAGCTCCTGA--GAGACACTG-ACCCTTGAGAGACAATGACCCCGAGAGACAACTGCTCCCGAgagaagcagtgtg-gcctagtgggta i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12341337 92 + 72422247 TCATCAATCCACAGCTGAACACCAGTTCCCCA--TGAACACCA-GTCCTCAGGTG-----TGCACCCGG-------TCCTCTCATGTGCATCAG---G-GCCAGGCTGACA i ponAbe2.chrUn C 0 C 0 s oryLat2.scaffold877 16260 78 - 77346 ccccatgtccaaaactggcccccatgtcccaaactggcccccatgtcctaaacag-----gcccccatG-------TCCT-------GAACCAG-----CCC--------- i oryLat2.scaffold877 I 2 C 0 s petMar1.Contig17054 7934 42 + 15935 ------------------ACACGAGATTCAGGG-TGGACACGA-GACTCAGGGTG-----GACACGT-------------------------------------------- i petMar1.Contig17054 C 0 C 0 e danRer6.chr3 238884 124 - 60907308 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552735 0 + 924072 C e fr2.chrUn 92439582 23 + 400509343 I a score=4771.000000 s hg19.chr4_gl000194_random 16889 74 + 191469 TAGGCACCAGCTGAACTCTGGGCCTCAGGTGAACAT-CAGAT--CCCAGGTTGTCACCCAGGCCCCAAGTGAATACC s ponAbe2.chrUn 12341429 74 + 72422247 TAGGCACCAGCTGAACTCTGGGCCTCAGGTGAACAT-CAGAT--CCCAGGTTGTCACCCAGGCTCCAGGTGAACACC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 1645 46 + 25579 -------------------gagcctggggtgggagt-cagaggacccgggtcctcctcccggctcc----------- i ornAna1.Contig11719 C 0 I 348 s xenTro2.scaffold_494 552735 73 + 924072 TGGTCTCTAGGGGAACACTGGACTCTAGGGGAACAC-TGGAC--TCTAGGGGAACA-CTGGACTCTAGGGGAACACT i xenTro2.scaffold_494 C 0 C 0 s oryLat2.scaffold877 16338 75 - 77346 TGTGTCCCAAACCAGCCCTGTGTCCCAAACCGGCCCACATGT--CCTAAATTGTCCCCCGTGTCCCAAACCAGcccc i oryLat2.scaffold877 C 0 n 0 s petMar1.Contig17054 7976 53 + 15935 --------------------GACTCGGGATGGACAC-GAGAT--TCAGGGTGGACA-CGAGACTCGGCGTGGACACG i petMar1.Contig17054 C 0 C 0 e danRer6.chr3 238884 124 - 60907308 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e fr2.chrUn 92439582 23 + 400509343 I a score=7134.000000 s hg19.chr4_gl000194_random 16963 32 + 191469 AGGTTTTAGGTGGACACGAGGTCCTAGGTGGA s ponAbe2.chrUn 12341503 32 + 72422247 AGGTTTTAGGTGGACACGAGGTCCTAGGTTGA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 552808 30 + 924072 GGACTCTAGGGGAACACTGGACTCTAGGGG-- i xenTro2.scaffold_494 C 0 I 232 s fr2.chrUn 92439605 32 + 400509343 AGGAACCATGAAGATCTCAGGACCCATGAGGA i fr2.chrUn I 23 C 0 s petMar1.Contig17054 8029 32 + 15935 AGATTCATGGTGGACACGAGACTCAGGGTGGA i petMar1.Contig17054 C 0 T 1362 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e oryLat2.scaffold877 16413 0 - 77346 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=7382.000000 s hg19.chr4_gl000194_random 16995 65 + 191469 TGTCTATGCTCCTGGTGAACCTCAGGCCCTAGTGGACACTCAGGCCCTTTATAGACATCTGGCTC s ponAbe2.chrUn 12341535 65 + 72422247 TGTCTATGCTCCTGGTGAACCTCAGGCCCTAGTGGACACCCAGGCCCTTTATAGACATCTGGCTC i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 92439637 64 + 400509343 ACTCAGGACCCATGAGGAA-CTCAGGACCCATGAGGAACTCAGGAACCATGAGGATCTctgcatc i fr2.chrUn C 0 N 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e oryLat2.scaffold877 16413 0 - 77346 I e petMar1.Contig17054 8061 1362 + 15935 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552838 232 + 924072 I a score=5946.000000 s hg19.chr4_gl000194_random 17060 70 + 191469 CTTGTGCACTCCCAGGGCCCAGGTAGACATGAGGCCCCAGAGGAAAACCAGTCCTTAGTCATCTAACACT s ponAbe2.chrUn 12341600 70 + 72422247 CATGTGCACTCCCAGGGCCCAGGTAGACATGAGGCCCCAGAGGAACACCAGTCCTTAGTCACCTAAGACT i ponAbe2.chrUn C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e oryLat2.scaffold877 16413 0 - 77346 I e petMar1.Contig17054 8061 1362 + 15935 T e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552838 232 + 924072 I a score=12871.000000 s hg19.chr4_gl000194_random 17130 81 + 191469 GAATTCCCCTAGGGCTGGAGA------CTGAGTATTCACCTTGGGCCTAGGAATCTACCTGGGGCCA-GAT-GTTGATCTGGGGCCTGA s ponAbe2.chrUn 12341670 81 + 72422247 GAATTCCCCTAGGGCTGGAGA------CTGAGTATTCACCTTGGGCCTAGGAATCTACCTGGGGCCA-AAT-GTCGATCTGAGACCTGA i ponAbe2.chrUn C 0 C 0 s petMar1.Contig22977 11862 89 + 15049 GAGTCCACCTGGGCCCAGAAAGTCTACCTGAGAGTCCACCTGGGGCATGAGAGTCCACCTGGGGCCATGATAGTCCACCTGGGCCATGA i petMar1.Contig22977 T 399 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e oryLat2.scaffold877 16413 0 - 77346 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552838 232 + 924072 I a score=-2612.000000 s hg19.chr4_gl000194_random 17211 25 + 191469 -TGTCTACTCAGATT-CAGCTGTCCAC s xenTro2.scaffold_494 553070 25 + 924072 -GGAACACTGGTCTC-TAGGGGAACAC i xenTro2.scaffold_494 I 232 I 483 s ponAbe2.chrUn 12341751 25 + 72422247 -TGTCTACTCAGGTT-CAGCTGTCCAC i ponAbe2.chrUn C 0 C 0 s oryLat2.chr20 597518 5 + 24728221 ----------------------TCTAC i oryLat2.chr20 I 1 C 0 s petMar1.Contig22977 11951 27 + 15049 TAGTCCACCTGGGCCATGAGAGCCCAC i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=20019.000000 s hg19.chr4_gl000194_random 17236 122 + 191469 TTAGGGTGGGGT-GTTTTTCTGGGACCC-AGAGTCTACCTGAAATCTTGGTATCAACCTGGGGCCTATGTG---------TCCACTTGGAGTCTG-ATGTGC----ACTTGAAGCCTGAATTTTCACCTAGGATCTGA s ponAbe2.chrUn 12341776 131 + 72422247 CTAGGGCGGGGT-GTTTTTTTGTGATCC-AGAGTCTACCTGAAATCTTGGTGTCAACCTGGGGCCTACTTGGCCCCAGACTCCACTTGGAGTCTG-ATGTGC----ACCTGAAGCCTGAGTTTTCACCTAGGATCTGA i ponAbe2.chrUn C 0 C 0 s oryLat2.chr20 597523 125 + 24728221 CTGAGACAAGATCATCTACCTGAGACAAGAGAATCTACCTGAGACAAGAGTATCTACCTGAGACAGAAGTA---------TCTACCTGAGAC----AAGTGCATCTACCTGAGACAAGAGCATCTACCTGAGACAAGA i oryLat2.chr20 C 0 C 0 s petMar1.Contig22977 11978 125 + 15049 CTGGGCCATGATAGTCCACCTGGGCTATGAGAGTCCACCTGGGCCATGAGAGTCCACCTGGGCCATGAGAG---------TCCACCTGGGCCATGAGAGTCC----ACCTGGGGCATGAGAGTCCACCTGGGGCATGA i petMar1.Contig22977 C 0 n 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553095 483 + 924072 I a score=3362.000000 s hg19.chr4_gl000194_random 17358 32 + 191469 TGAGC-ACTTGGGGCGCAGGTTTCCATCTGAAA s ponAbe2.chrUn 12341907 32 + 72422247 TGAGC-ACCTGGGGCCCAGGTTTCCATCTGAAA i ponAbe2.chrUn C 0 C 0 s oryLat2.chr20 597648 33 + 24728221 GCATCTACCTGAGACAAGAGCATCTACCTGAGA i oryLat2.chr20 C 0 N 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e petMar1.Contig22977 12103 0 + 15049 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553095 483 + 924072 I a score=12075.000000 s hg19.chr4_gl000194_random 17390 88 + 191469 -ATCAGGCTCTAGTTATACATCTGGGCCCCAGGTATACCCTGGACACCGAAAGAACTCCAGCCCCTATCTTAACATGAGGTCCTAGGTG s ponAbe2.chrUn 12341939 89 + 72422247 CATCAGGCTCTAGTTATACATCTGGGCCCCAGGTATACACTAGACACCAAAAGAACTCCAGCCCCTATCTTAACATGAGGTCCTAGGTG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553578 88 + 924072 CACTGGACTCTAGGGGAACA-CTGGACTCTAGGGGAACACTGGACTCTAGGGGAACACTGGACTCTAGGGGAACACTGGACTCTAGGGG i xenTro2.scaffold_494 I 483 T 570 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e petMar1.Contig22977 12103 0 + 15049 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=36188.000000 s hg19.chr4_gl000194_random 17478 420 + 191469 GATGCCCAGGCGTCATGTCTACTTTAGGCCTCAGGTAGACACGACTCCAGGCAGGCATCAGGCCTAATAttggctctatgtctccacccaaatctcatgttgaattgtaatccccatgggttgaagaaggggcgtggtgagaggtgattgaatcatgggggcagacttcccacttgctcttctcgtgatagacttcttacgagatctggttatttgaaagtgtgtagcacatcccccttctctctccctcctcctcccccatggtaaaaagggcttgcttcctcttggctttacatcatgattgtaagtgtcccaggcccgcccagtcatgctccctattaagcctgaagaactgtgggtcagttaaacctcttttcctcataagttgcccaatatcaggtagtattttataacagtgtg s ponAbe2.chrUn 12342028 417 + 72422247 GATGCCCAGGCCTCATGTCTACACTAGGCCTCAGGTAGACACGACTCCAGGTGGGCATCAGGCCtgatattggctctatatctccacccaaatctcatgttgaattgtaatccacatgggttgaagaaggggcctggtgagaggtgattgaatcatgggggcagatt---catttgctgttctcgtgatagagttcttatgagatctggttatttgaaagtgtgtagcacatcccccttctctctccctcctcctcccccatggtaaaaagggcttgcttcctcttggctttacatcatgattgtaagtgtcccaagcccacccagtcatgctccctattaagcctgaagaactgtgggtcagttaaacctcttttcctcataagttgcccaatatcaggtagctttttataatagtgtg i ponAbe2.chrUn C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e petMar1.Contig22977 12103 0 + 15049 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553666 570 + 924072 T a score=4007.000000 s hg19.chr4_gl000194_random 17898 41 + 191469 aaaatggactaatacaAGACCTTAGGATAACAACCATGCTT s ponAbe2.chrUn 12342445 41 + 72422247 aaaatggactaatacaAGGCCTTAGGATAACAACCATGCTT i ponAbe2.chrUn C 0 C 0 s petMar1.Contig22977 3753 35 - 15049 AAGCTGGACTATCATGG---CCCAGGTGGACTATCATG--- i petMar1.Contig22977 I 149 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e danRer6.chr3 238884 124 - 60907308 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553666 570 + 924072 T a score=9782.000000 s hg19.chr4_gl000194_random 17939 56 + 191469 CAGGCCATAGGTGGAC-ATC-TGGCTGCAACTGGACACTAT-TCCCCAGGTGGATACTT s ponAbe2.chrUn 12342486 56 + 72422247 CAGGCCATAGGTAGAC-ATC-TGGCTGCAGCTGGACACTAT-TCCCCAGGTGGATACCT i ponAbe2.chrUn C 0 C 0 s danRer6.chr3 239008 57 - 60907308 CATGCCCCAACTGGACAAAC-TTGTTCCAGAGACCCGCCAT-CCCCCAACTGGACTTTG i danRer6.chr3 I 124 I 1 s petMar1.Contig22977 3788 56 - 15049 ---GCCCCAGGTGGACTATCATGGCCCCAGTGGACTATCATGGCCCCAGGTGGACTCTC i petMar1.Contig22977 C 0 T 92 e ornAna1.Contig11719 1691 348 + 25579 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553666 570 + 924072 T a score=5855.000000 s hg19.chr4_gl000194_random 17995 103 + 191469 AGGCTCAAGGTTGAC-ATTAGTCCCCAGGTAAAC-AACA-AGCCCCAGGTGAATACCTATGCCCTAAGTAGAC-ATCA-GGCCTC---AGGCTGACACTCAG-TCTAAGCTC s ponAbe2.chrUn 12342542 103 + 72422247 AGGCTCAAGGTTGAC-ATTAGTCCCCAGGTAAAC-AACA-AGCCCCAGGTGAATACCTATGCCCTAAGTAGAC-ATCA-GGCCTC---AGGCTGACACTCAG-TCTAAGCTC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553096 102 + 924072 GGACTCTAGGGGAAC-ACTGGACTCTAGGGGAAC-ACTG-GACTCTAGGGGAACA-CTGGACTCTAGGGGAAC-ACTG-GACTCT---AGGGGAACATTGGTCTCTAGGGG- i xenTro2.scaffold_494 T 570 T 360 s danRer6.chr3 239066 98 - 60907308 TGTTTCAAAGAC-CC-ACCATCCTCCAACTAGACAAACT-TGTCCCAGAGACCCA-CCATCCTCCAACTGGAC-GTGA-GTGTTCCAGAGACTCACCATCAC-CC------- i danRer6.chr3 I 1 I 3 s petMar1.Contig22977 3752 94 - 15049 -----CAAGCTGGACTATCATGGCCCAGGTGGACTATCATGGCCCCAGGTGGACTATCATGGCCCCAGTGGACTATCATGGCCCC---AGGTGGACTCTCGG---------- i petMar1.Contig22977 T 92 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=7127.000000 s hg19.chr4_gl000194_random 18098 41 + 191469 AACATTAGGCT----CAGGTGGACACCCA-GACTCCAGGTGGATAC s ponAbe2.chrUn 12342645 42 + 72422247 AACATTAGGCT---CCAGGTGGACACCCA-GACTCCAGGTGGATAC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 552838 41 + 924072 AACACTGGTCT---CTAGGGGAACA-CTG-GACTCTAGGGGAACAC i xenTro2.scaffold_494 T 360 C 0 s danRer6.chr3 239167 44 - 60907308 AGGAATGGGTTGTTTCAGAGACCCA-CCA-TCCCCCAACTGGACAA i danRer6.chr3 I 3 C 0 s petMar1.Contig22977 3846 35 - 15049 -------GGCC----CAGGTGGACTCTCATGGCCCCAGGTGGACTC i petMar1.Contig22977 C 0 T 924 e ornAna1.Contig11719 1691 348 + 25579 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=13686.000000 s hg19.chr4_gl000194_random 18139 65 + 191469 TAGACCCCAGGGGTACACCAGACTCCTGGTAAGCATAA-GGCCCCAGGAGGACACTAGAATCCAGG s ponAbe2.chrUn 12342687 65 + 72422247 TAGACCCCTGGGGTACACCAGACTCCTGGTAGGTATAA-GGCCCCAGGAGGACACTAGAATCCAGG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 552879 55 + 924072 TGGACTCTAGGGGAACACTGGACTCTAGGGGAACACTG-GTCTCTAGGGGAACACT---------- i xenTro2.scaffold_494 C 0 C 0 s danRer6.chr3 239211 66 - 60907308 CCTGTTCCAGACACCCGCCATCCCCCAAATGGACTTAGTTGTTCCAGAGACCCACCATCATCCAAC i danRer6.chr3 C 0 C 0 s petMar1.Contig17054 6699 61 + 15935 GAGACTCAGGGTGGACACGAGACTCGGGGTAGAAACGA-AACTCAGGGTGGACACAAGACTC---- i petMar1.Contig17054 T 1362 C 0 s papHam1.scaffold21342 7203 42 + 39824 -----------------------TCCTGGTAGACATCA-GGCCCCAGGAGGACACTGGAATCCAGG i papHam1.scaffold21342 N 0 I 22 e ornAna1.Contig11719 1691 348 + 25579 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=1986.000000 s hg19.chr4_gl000194_random 18204 33 + 191469 TGTACATAAAGCCACTGGTTGACTCCAAGCCCT s danRer6.chr3 239277 24 - 60907308 ------TAAA---ATGGGTTGTTTCAGAGACCC i danRer6.chr3 C 0 I 9 s ponAbe2.chrUn 12342752 31 + 72422247 TGT--ATAAAGCCACTGGTTGACACCAAGCTCT i ponAbe2.chrUn C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e petMar1.Contig17054 6760 0 + 15935 C e papHam1.scaffold21342 7245 22 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552934 0 + 924072 C a score=3310.000000 s hg19.chr4_gl000194_random 18237 35 + 191469 CAGATGAAC----------------ACCAGGCCAACTAGTGGA--CATTAGGC s ponAbe2.chrUn 12342783 35 + 72422247 CAGATGAAC----------------ACCAGGCCAACTAGTGGA--CTTTAGGC i ponAbe2.chrUn C 0 C 0 s papHam1.scaffold21342 7267 35 + 39824 CAGATGAAC----------------ACCAGGCCAACTGGAGGA--CATCAGGC i papHam1.scaffold21342 I 22 I 196 s danRer6.chr3 239310 53 - 60907308 CCGCTAGACTTCGTCATTATCCAAGACTTGGCTGATTAGAAGACCCACCATTC i danRer6.chr3 I 9 I 3 s petMar1.Contig17054 6760 14 + 15935 GGGATGGAC----------------ACGAG----------------------- i petMar1.Contig17054 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552934 0 + 924072 C a score=10990.000000 s hg19.chr4_gl000194_random 18272 231 + 191469 ACATGAGAATACTTGGGCACCAGGCAGGTATCAGGCCCCGGGTAAACATCAAACTT----CAGGTGGACATCGTTCTCCATTTAAACTC--TAGCCCCAGCTAAACATCAGGCTCCAGGTGGAAGCCCAGACCCCAGGTGCACTTCTGGCCACAGTTGGACAT--CTGTCCCCAGG--TGAATATCAGACCATGGATGGATAGCAAGTCCCCAGGTGGACATCAG-GTCAAAAGAGAATATA s ponAbe2.chrUn 12342818 231 + 72422247 ACATGAGAACACTTGGGCACCAGGAAGGTATCAGGCCCCAGGTAAACATCAAACTT----CAGGTGGACATCATTCTCCATGTAAACTC--TAGCCCCAGCTAAACATCAGGCTCTAGGTGGAAGCCCAGACCCCAGGTGCACTTCTGGCCACAGTTGAACAT--CTGTCCCCAGG--TGAATATCAGACCATGGATGGATAGCAAGTCCTCAGGTGGACATCAG-GTCAAAAGTGAATATA i ponAbe2.chrUn C 0 C 0 s danRer6.chr3 239366 229 - 60907308 AACTGGACTTAATT--GTTTCAGAGGCCCACCATGCCCCAACTGGA---CAAACTTGTTCCAGAGACCCACCATTCTTCAACTAGACTTAATTGTTCCTGAGGCCCACCATGCCCCAACTGGACAAACTTGTTCCAGAGACCCGCCATCCCCCAACTGGACTTTGTTGTTCCAAAGACCCACCATCCAACTAGACGTGTTTG------TTCCAGAGACCCACCATCACCCAACTGGAATG-- i danRer6.chr3 I 3 C 0 s petMar1.Contig17054 6774 160 + 15935 ----------ACTTAGACTCGGGGTAGAAACGAGACTCAGGGTGGACACGAGACTC----GGGATGGACAC-----------GAGACTT--------------------AGACTCGGGGTAGAAACG-AGACTCAGGG------------------TGGACAC--GAGACTCGGGG--TAGAAACGAAACTCAGGGTGGACA-CAAGACTCGGGATGGACACGAG-ACTT------------ i petMar1.Contig17054 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7302 196 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 552934 0 + 924072 C a score=-3877.000000 s hg19.chr4_gl000194_random 18503 35 + 191469 AGTCTCTAGGAAGA--CATCTGGCCCCAGGTGG-----------------------------------------------------------------------------------------ATAC s ponAbe2.chrUn 12343049 124 + 72422247 AGTCTCTAGGAAGA--CATCTGGCCCCAGGTGGATACTGAACTAGAGGTTTACATCAGGCCCCAGGTTGACAGCAAGGCCCAGGTAGACAGCAGGCCCCAAGTGAACACCAGGCCCAGGTGTATAC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 552934 35 + 924072 GGTCTCTAGGGGAA--CACTGGACTCTAGGGGA-----------------------------------------------------------------------------------------ACAC i xenTro2.scaffold_494 C 0 C 0 s danRer6.chr3 239595 37 - 60907308 GGTTGTTACAGAGACCCACCATCTCCCAACTGG-----------------------------------------------------------------------------------------ACTT i danRer6.chr3 C 0 I 3 s petMar1.Contig17054 6934 35 + 15935 AGACTTGGGGTAGA--AACGAGACTCAGGGTGG-----------------------------------------------------------------------------------------ACAC i petMar1.Contig17054 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7302 196 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=2000.000000 s hg19.chr4_gl000194_random 18538 37 + 191469 TGAACTAGAGGTTTA-CATCAGACCCCAGATTGACATT s ponAbe2.chrUn 12343173 37 + 72422247 TGAACTAGAGGTTTA-CATCAGGCCCCAGATTGACATT i ponAbe2.chrUn C 0 C 0 s papHam1.scaffold21342 7498 35 + 39824 CTAACTTAAGGTTTT-CATCAGGTCCCAGATTGACA-- i papHam1.scaffold21342 I 196 I 86 s xenTro2.scaffold_494 552969 37 + 924072 TGGACTCTAGGGGAA-CATTTGACTCTAGGGGAACATT i xenTro2.scaffold_494 C 0 C 0 s danRer6.chr3 239635 38 - 60907308 TGTTCCAGAGACCCACCATCCGACACCTGGACTACAAA i danRer6.chr3 I 3 C 0 s petMar1.Contig17054 6969 8 + 15935 -------GAGACTCG----------------------- i petMar1.Contig17054 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-87.000000 s hg19.chr4_gl000194_random 18575 186 + 191469 CAGTCCCCAGGTGGTCATGACACCTCAATTG-----GACACCAAGTCCTCA-------------GGTTGAT---------AACCAAGTCCCAGGTGGACACTAC----GTCAAA---------GATGAACACAAGACCTAAGGTTGTC-------ATTCAA--GCCCCAAATGGACACCAGGCCCTA-----GGTGAATAATATGACCCAGGGGATGATTGGGACCCAGCTGC--TTACCAG s ponAbe2.chrUn 12343210 186 + 72422247 TAGTCCCCAGGTGGTCATGACACCTCAATTG-----GACACCAAGTCCTCA-------------GGTTGAT---------ACCCAAATCCCAGGTGGACACCAG----GTCAAA---------GATGAACACAAGACCTAAGGTTGAC-------ACTCAA--GCCCTAAGTGGACACCAGGCTCTA-----GGTGAATAATATGACCCAGGGGATCATTAGGACCCAGCTGC--ATACCAG i ponAbe2.chrUn C 0 C 0 s danRer6.chr3 239673 236 - 60907308 GAGCCACCA-TCGCCCAAACTGACTTAGTTGTTCCAGAGACCCA-CCATCACCCAACTAAAATGGGTTGTTTCAGAGACCCCCCACGCCCCCGCTGGACTTCGGCATTATCCAACTAGACTTGGCTGTTTAGAAGACCCACCATTTCCCAATTAGACTAAATTGTTTCAGAGGCCCACCATGCCCCAACTAGGGTTAAT----TGTTTCAGAGGCCCTCCATGCTCCAACTGAAGTTAATTG i danRer6.chr3 C 0 C 0 s petMar1.Contig17054 6977 132 + 15935 ---------------------------------------------------------------GGGTGGACACGAG----ACTTAGACTCGGGGTAGAAACGAG----ACTCAG---------GGTGGACACAAGACTCGGGATGGAC--ACTAGACTTAA--ACTTGGGGTAGAAACGAGACTCCG-----GGTGGACAC--AGACTCGGGA------TGGACACGAG------------- i petMar1.Contig17054 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553006 0 + 924072 C a score=-19073.000000 s hg19.chr4_gl000194_random 18761 190 + 191469 TCCCCAGGTTTACACGAGGCCCCAAGTAGG------------------TTCCTAAGCTCTAGTTGAACATGAGG-----------TCTCCAGTAGACACCCAGGACTAAGGTGGACATCAA---GCATCAGATGGACGTCTGGCTG-CGGA-------TGAACATCAAGCCTCACA---TGG--------ATACCTAG---TCCGCAGGTAGGCAT-CAGGC-CCCAGTTTGACATCAGTTTCTGG s ponAbe2.chrUn 12343396 190 + 72422247 TCCCCAGGTTTACACGAGGCTCCCAGTAGG------------------TTCCTAAGCTCTAGTTGGACATGTGG-----------TCTCCAGTAGACACCCAGGACTAAGGTGGACATCAA---GCATCAGATGGACGTCTGGCCG-CGGA-------TGAACATCAAGCCTCATA---TGG--------ATACCTAG---TCCCCAAGTAGACAT-CAGGC-CCCAGTTTGACATCAGTTTCTGG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_127 2239662 189 + 2504804 TTTTTGGATATA--------------TAGG------------------TATCAATACTC-AGTAGAACCTTTGG-----------CTCCAAGCAGACATTTCGTGGATATATAGGTATCAA--TACTTTAGA---ACCTTTGGCTATCAGACATTTCTTGGATATATAGCTTTGCACACTGG-TGA--TCCTGCCTAG---TCTCCAAGCAGACAT-TTGTTGGATATATAGGTATCAA-TACTCG i xenTro2.scaffold_127 n 0 C 0 s danRer6.chr3 239909 209 - 60907308 -TTTCAGAGGCCCACCATGCCCCAACTAGGGTTAATTGTTTCAGAGGCCCTCCATGCTCCAACTGAAGTTAATT-----------GTTTCAGAGGCCCACCATGCCCCAACTGGACA--AACTTGTTCCAGAGACCCGCCATCCCC-CAAC-------TGGACTTTGTTGTTCCAA--------------AGACCCAACATCCTCCAACTAGACGTGTTTGT-TCCAGAGACCCACCATCCTCCTG i danRer6.chr3 C 0 C 0 s petMar1.Contig17054 7109 179 + 15935 ACTCGGGGGTGACACGAGACT-----TAGA--------------------------CTCGGGGTAGAAACGAGACNNNNNNNNNNtcctcagcagcagcagcaacatatgGCTGGCG--AA---GGAGTAGA---ACGCCgcgtct-ctcc-------cccctctctaccTTCTCCCAccagatcacccccccccccg---tccacacAGCGACAT-GGGGG--------AGGCAACA-------- i petMar1.Contig17054 C 0 n 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=19.000000 s hg19.chr4_gl000194_random 18951 11 + 191469 GTGGAT--------------------CCTTA s ponAbe2.chrUn 12343586 11 + 72422247 ATGGAT--------------------CCCTA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_127 2239851 11 + 2504804 GTAGAA--------------------CCTTT i xenTro2.scaffold_127 C 0 C 0 s danRer6.chr3 240118 31 - 60907308 CTGGATGTGGTTGTTCCAGAGACCCACCGTG i danRer6.chr3 C 0 I 54 s petMar1.Contig22977 2957 11 - 15049 GTGGAC--------------------TCTCA i petMar1.Contig22977 T 924 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-2715.000000 s hg19.chr4_gl000194_random 18962 54 + 191469 AGCCCCAGGTGGATATCCAGTGTCC---AGCTGGACATCAGCCCCTCATGGACGCCC s ponAbe2.chrUn 12343597 54 + 72422247 AGCCCCAGGTGAATATCCAGTCTCC---AGCTGAACATCAGCCCCTTGTGGATGCCC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_127 2239862 54 + 2504804 GGCTCCAAGCAGACATTTGTTGGAT---ATATAGGTATCAATACTCGGTAGAAGCTT i xenTro2.scaffold_127 C 0 I 9387 s tetNig2.chrUn_random 21870801 35 + 107808587 GGTCCCAGG-GGAGACCC-CAGTCCT--AACAGGA------------------ACCC i tetNig2.chrUn_random N 0 I 1 s danRer6.chr3 240203 51 - 60907308 TGTTCCA----GAGACCCACCATCCTCCAACTGGACGTGAGTGTTCC--AGAGACCC i danRer6.chr3 I 54 I 3 s petMar1.Contig22977 2968 41 - 15049 TGCCCCAGGTGGACTCTCATGGCCC---AGGTGGA-------CTCTCATGG------ i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=4121.000000 s hg19.chr4_gl000194_random 19016 74 + 191469 AGTCCCCAGGTGAAT----------------ATCA----GGTCTCAGGTGAACACAAGTCCTCAGGCAGAC-ATCAGACACCAGGTGTACACTCA s ponAbe2.chrUn 12343651 74 + 72422247 AGGCCCCAGGTGGAT----------------ATCA----GGTCTCAGGTGAACACAAGTCCCCAGGCAGAC-ATCAGGCACCAGGTGCACACTCA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553006 72 + 924072 AGACTCTAGGGGAAC----------------ATTA----GACTCTAGGGGAACACTGGACTCTAGGGGAAC-ACTGGACTCTAGGGGAACACT-- i xenTro2.scaffold_494 C 0 C 0 s tetNig2.chrUn_random 21870837 73 + 107808587 AGTCCCAGGGGAGAC----------------CCCA----GTCCTAACAGGAACCCCAGTCCCAGGGGAGAC-CTCAGTCCTAGCAGGAACCCCA- i tetNig2.chrUn_random I 1 C 0 s danRer6.chr3 240257 93 - 60907308 ATTCCCCAACTAGACTTAATTGTTCCTGAGGCCCACCATGCCCCAACTGGACAAACTTTTTCCAGAGACCC-GCCATCCCCCAACTGGACGTGA- i danRer6.chr3 I 3 I 2 s petMar1.Contig22977 3009 73 - 15049 ----CCCAGGTGGACT---------------CTCA---TGGCCCAGGTGGACTCTCATAGCCCAGGTGGACTATCATGGCCCAGGTGGGCTCTCA i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-16463.000000 s hg19.chr4_gl000194_random 19090 118 + 191469 -GACCCCAAGAGGACATCTGTCCCCAGGTTGACATCACTCTCAAGGTGTACATTAGGCCACAGATGTACA--CCCAGGTCCAAGGCAGACACGAGTC---CCCAGTAAAACT--CAAGGCCCCAGG- s ponAbe2.chrUn 12343725 118 + 72422247 -GACCCCAAGAGGACATCCGTCCCCAGGTTGACATCACTGTCAAGGTGTACATTAGGCAACAGATGTACA--GCCAGGTCCAAGGCAGACACGAGTC---CCCAGTAAAACT--CAAGGCCCCAGG- i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553078 46 + 924072 -GGTCTCTAGGGGA--------------------------------------------------------------------------ACACTGGAC---TCTAGGGGAACA--CTGGACTCTAGG- i xenTro2.scaffold_494 C 0 C 0 s tetNig2.chrUn_random 21870910 115 + 107808587 -GTCCCAGGGGAGACCCCAGTCCTAACAGGAACCCCAGTCCCAGGGGAGACCCCAGTCCTAACAGGAACC---CCAGTCCCAGGGGAGACCCCAGTC---CTAGCAGGAACC--CCAGTCCC--AG- i tetNig2.chrUn_random C 0 I 20 s oryLat2.chr10 18145152 115 + 27595823 -GGCCTGAGGTGGGTACTGGGCCTGGTGTGGGTCTTGGGTCTGAGGTGGATACTGGGCCTGAGGTGGATA---CTGGGCCTGAGGTGGATActgggc---ctgaggtgggta--ctgggcct--gg- i oryLat2.chr10 N 0 I 3 s danRer6.chr3 240352 117 - 60907308 -GTTCCAGAG-ACCCACCATCCCCCAATTGGACAACCTGTTCCAGACACCCGCCATCCCCCAAATGGACTTAGTTGTTCCAGAGACCCACCATCACCCAACTAAAATGGGTT-----GTTTC--AG- i danRer6.chr3 I 2 C 0 s petMar1.Contig22977 3082 98 - 15049 TGGCCCAGGTGGACTATCATGGCCCAGGTGGACTATCAT----------------GGCCCCAGGTGGACT--CTCATGCCCCAGGTGGACT---------CTCAGGTAGACTTTCTGGGCCC--AGG i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-8322.000000 s hg19.chr4_gl000194_random 19208 34 + 191469 AGGATACTCAAGCCCTAGGTGGATG-------------CCCAGACCC s ponAbe2.chrUn 12343843 34 + 72422247 AGGATACTCAAGCCCTAGGTGGATG-------------CCCAGACCT i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553124 14 + 924072 GGAACACT---------------------------------GGACTC i xenTro2.scaffold_494 C 0 C 0 s tetNig2.chrUn_random 21871045 32 + 107808587 AGGACCCCA--GTCCTAACAGGAAC-------------CCCAGTCCC i tetNig2.chrUn_random I 20 N 0 s fr2.chrUn 63101557 29 - 400509343 AGGACACCC---CCTCAGCTGGGA---------------CCAGGCTC i fr2.chrUn N 0 I 1 s oryLat2.chr10 18145270 31 + 27595823 gggtcctgg--gtctgaggtgggt--------------tctgggcct i oryLat2.chr10 I 3 C 0 s danRer6.chr3 240469 46 - 60907308 AGACCCCCCACGCCCCCGCTGGACTTTGGCATTATCCAACTAGACT- i danRer6.chr3 C 0 C 0 s petMar1.Contig22977 3180 34 - 15049 TGGACTCTCTGGGCCCAGGTGGACT-------------CTCATGCCC i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-14106.000000 s hg19.chr4_gl000194_random 19242 143 + 191469 CAGGTAATTACA-AGGCCCC---------AGGTGGA---TACCAGATTCCAGATGAA--CATTAGGCCTCAAGTGG--ATAC-CTAGGCACCAGGTAGACACCAGG---CCCCAGGTACATC--CCCTGGTCTC-AGGTGCACACT-AGGTCCCCAGTGAACACTGGC s ponAbe2.chrUn 12343877 143 + 72422247 CAGGTAATTACA-AGGCCCC---------AGGTGGA---TATCAGATTCCAGATGAA--CATTAGGCCCCAAGTGG--ATAC-CTAGGCACCAGGTAGACACCAGA---CCTCAGGTGCATC--CCCCAGTCTC-AGGTGCACACT-AGGCCCCCAGTGAACACTGGC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553138 140 + 924072 TAGGGGAACACT-GGACTCT---------AGGGGAA---CACTGGACTCTAGGGGAA--CATTGGTCTCTAGGGGA--ACA--CTGGACTCTAGGGGAACACTGGA---CTCTAGGGGAA----CACTGGTCTCTAGGGGAACACT-GGACTCTAGGGGAACATTGG- i xenTro2.scaffold_494 C 0 I 90 s fr2.chrUn 63101587 139 - 400509343 GGGCTGGGACCA-GGCTCTG---------GACTGGG---ACCAGGCTCCGGGCTGGG--ACCAGGCTCTGGACTGG--GAC--CAGGCTCCGGGGTGGGACCAAGC---TCTGGGCTGGACCAACTTTGGGCTG-GGACCAG-ACT-----CTGGACTGGGACCAGGC i fr2.chrUn I 1 C 0 s oryLat2.chr10 18145301 141 + 27595823 gAGGTGGATACT-GGGCCTG---------AGGTGGA---TACTGGGCCTGAGGTGGA--TACTGGGCCTGAGGTGG--GTA--CTGGGCCTGGTGTGGGTCCTGGG---TCTGATGTGGAT---ACTTGGCCTG-ATGTGAGTACT-GGGCCTGGTATGGGTACTGGC i oryLat2.chr10 C 0 N 0 s danRer6.chr3 240515 151 - 60907308 TGGCTGATTAGA-AGACCCACCATTCCCCAACTGGACTTAATTGTTTCAGAGGCCCA--CCATGCCCC--AACTGGACAAA--CTTGTTCCA----GAGACCCATCATTCCCCAACTAGACTTAATTGTTCCTG-AGGCCC--ACC-ATGCCCCAACTGG--ACAAAC i danRer6.chr3 C 0 I 4 s petMar1.Contig22977 3214 138 - 15049 CAGGTGGACTCTCATGCCCc---------aggtgga---------ctctcaggtagactctctgggccc-aggtgg--actctctggacccaggtggactctcatg---gcccaggtggact--ctcatgcccc-aggtggactctcatgcaccaggtggactct--- i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-2130.000000 s hg19.chr4_gl000194_random 19385 104 + 191469 TACAGGTAAGCAC---CCAGTCCAAGGTAGAC-ATCAT--GACCCAGGTGGTC-ATTAGGCCAC-------AGCTGAACACCA--ATCTTGAGTGAACAC-CAGATCCCAGGTGGGTACCT-- s ponAbe2.chrUn 12344020 104 + 72422247 TCCAGGTGAACAC---CCAGTCCAAGGTAGAC-ACCAT--GACCCAGGTGGTC-ATTAGGCCAC-------AGCTGAACACCA--ATCTTGAGTGAACAC-CAGATCCCAGGTGGGTACCT-- i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 63101726 105 - 400509343 TCCGGGCTGGGAC---CAAGCTCTGGGCTGGG-ACCAG--GCTCCGGACTGGG-ACCAGGCTCCGGACTGGGACCAG--------GCTCCGGGCTGGGAC-CAGGCTCCGGGCTGGGACCA-- i fr2.chrUn C 0 C 0 s danRer6.chr3 240670 105 - 60907308 TCCA----GAGACCCGCCATCCCCCAACTGGA-CTTTGTTGTTCCAAAAACCC-ACCATCCTCC-------AACTAGACATGTTTGTTCCAGAGACCCAC-CATCCTCCAG--CAGGACGT-- i danRer6.chr3 I 4 C 0 s petMar1.Contig22977 3352 110 - 15049 --caggtagactct--cagggtccaggtggactctcag--gGCCTAGGTGGACTCTCATGCCCC-------ATGTGGACTCTCATGCCCCAGGTGGATTCTCATGCCCCAGGTGGACTCTCAT i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553278 90 + 924072 I a score=-3968.000000 s hg19.chr4_gl000194_random 19489 30 + 191469 AG-----TCCAGGTGGATATTGGGC----CCCAAGTGGA s ponAbe2.chrUn 12344124 32 + 72422247 AG---TCTCCAGGTGGATATTGGGC----CCCAAGTGGA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553368 30 + 924072 -----ACTCTAGGGGAACATTAGAC----TCTAGGGGAA i xenTro2.scaffold_494 I 90 C 0 s fr2.chrUn 63101831 31 - 400509343 -G---GCTCCGGGCTGGGACCAAGCT---CCGGGCTGG- i fr2.chrUn C 0 C 0 s danRer6.chr3 240775 33 - 60907308 -GGTTGTTCCA----GAGACCCACCGTTACCCAACTGG- i danRer6.chr3 C 0 N 0 s petMar1.Contig22977 3462 31 - 15049 -----GGCCCAGGTGGACTCTCATGG---CCCAGGTGGA i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=2995.000000 s hg19.chr4_gl000194_random 19519 44 + 191469 CACCCAGCCCCCAGGTGAACA-TCA-AGC----TTCAGGTGGAC-ATCATG s ponAbe2.chrUn 12344156 44 + 72422247 CACCCAGCCCCCAGATGAACA-TCA-AGC----TTCAGGTGGAC-ATCGTG i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553398 43 + 924072 CA-TTAGACTCTAGGGGAACA-TTG-GTC----TCTAGGGGAAC-ATTAGA i xenTro2.scaffold_494 C 0 I 73 s fr2.chrUn 63101862 43 - 400509343 -GACCAGGCTCCGGGCTGGGA-CCA-AGC----TCcggggtggg-accagg i fr2.chrUn C 0 I 1 s danRer6.Zv8_NA3633 120425 49 + 173243 gagccagatccagagcctgat-ccacagcctgatccTGATTCAG-AGCACA i danRer6.Zv8_NA3633 N 0 I 1 s petMar1.Contig22977 3493 46 - 15049 CTCTCATGCCCCAGGTGGACTCTCA-TGC----CCCAGGTGGACTCTCATG i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=2350.000000 s hg19.chr4_gl000194_random 19563 74 + 191469 CCTCAGGTGAACTCCGGGTCCCAGCCCAGCTGAAC-ATCAGGCTGCAGGTGGATGCCTAGGTTCCAGGTGCACAA s ponAbe2.chrUn 12344200 74 + 72422247 CCTCAGGTGAACTCCGGGTCCCAGCCCAGCTGAAC-ATCAGGCCGCAGGTGGATGCCTAGGTTCCAGGTGCACAA i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 63101906 72 - 400509343 tccgggctgggaccaggctccggggtgggaccagg-ctccggggtggggtGG--GACCAGGCTCCGGGCTGGGAC i fr2.chrUn I 1 C 0 s danRer6.Zv8_NA3633 120475 68 + 173243 ACCATATTATGAGCCGGGTccagatcgagagccag-atcaagagcctgat------caagagcctgatcTGGTTT i danRer6.Zv8_NA3633 I 1 C 0 s petMar1.Contig22977 3539 69 - 15049 GCCCAGGTGGACTC----TCTGGGCCCAGGCAGACTCTCAAGGCCCGGGTGGACTCTCAGGGCCTAGGTGGAC-- i petMar1.Contig22977 C 0 I 157 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553441 73 + 924072 I a score=-4729.000000 s hg19.chr4_gl000194_random 19637 69 + 191469 CAGGTCACAGTTGGACATTCA--GCCCCAGGTGAAC-ATC-------------------------------AGGCCATGGGTGGA-TAAACAGTCCACAGGTGG s ponAbe2.chrUn 12344274 68 + 72422247 CAGGTCACAGTTGGACATTCA--TCCCCAGGTGAAC-ATC-------------------------------AGGCCATGTGTGG--TAAACAGTCCACAGGTGG i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 63101978 68 - 400509343 CAAGCTCTGGGCTGGGACCAA--GCTCTGGGCTGGG-ACCAAGCTCC------------------------GGGCTGGGACC---------AGGCTCCGGGCTG i fr2.chrUn C 0 C 0 s danRer6.Zv8_NA3633 120543 91 + 173243 CAGAGCCTGATCC-AGATCAA--GAGCCAGGTCCAG-ATCAAGAGCCTGATGCACATAAAGAGTATGATGAAGACCCAGAGC---------CAGATCCAGATCG i danRer6.Zv8_NA3633 C 0 N 0 s petMar1.Contig22977 3765 73 - 15049 CATGGCCCAGGTGGACTATCATGGCCCCAGGTGGACTATC-------------------------------ATGGCCCCAGTGGACTATCATGGCCCCAGGTGG i petMar1.Contig22977 I 157 C 0 e ornAna1.Contig11719 1691 348 + 25579 I e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553441 73 + 924072 I a score=-8597.000000 s hg19.chr4_gl000194_random 19706 28 + 191469 -ACATCAGGTCAAAGGTGAAC-ATCAGTAC- s ornAna1.Contig11719 2039 27 + 25579 -ACACCA-ATCTCTGAGAGAC-ATCAGCCC- i ornAna1.Contig11719 I 348 C 0 s ponAbe2.chrUn 12344342 28 + 72422247 -ACATCAGGTCAAAGGTGAAC-ATCAGTAC- i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 63102046 28 - 400509343 -GGACCAGGCTCCGGGGTGGG-ACCAGGCT- i fr2.chrUn C 0 T 365 s danRer6.Zv8_NA3296 6948 28 - 47964 -ACATCATGTCTGAGAGTGAC-ATCACGTC- i danRer6.Zv8_NA3296 N 0 C 0 s xenTro2.scaffold_494 553514 1 + 924072 -----------------------------T- i xenTro2.scaffold_494 I 73 C 0 s petMar1.Contig22977 3838 31 - 15049 ACTCTCGGGGCCCAGGTGGACTCTCATGGCC i petMar1.Contig22977 C 0 C 0 e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=29420.000000 s hg19.chr4_gl000194_random 19734 116 + 191469 TCAGGTGGAC-ATCAGGCTCCAGGTTGAC-ATCAAGCCCAAGGTGGACACTGAACTAGAGGTTT-------------ACATCAGGCCCCAGGTTGAC-ACCCAGGCTCAGGTGGAC-ATTGGGCCCCAGGTGG s ponAbe2.chrUn 12344370 116 + 72422247 TCAGGTGGAC-ATCAGGCTCCAGGTTGAC-ATCAAGCCCAAGGTGGACACTGAACTAGAGGTTT-------------ACATCAGGCCCCAGGTTGAC-ACCCAGGCTCAGGTGGAC-ATTAGGCCCCAGGTGG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2066 125 + 25579 CCTAAGAGAC-ACAGGGCTCCTGAGAGAC-ATTGGCCCCCTGAGAGACATCAG---AGAGATCCTGGTCCCTGAGAGACA-CAGGCCTCACAGAGAC-ACCTACTCCTAGAGAGAC-ACGGGGCCCCGAGAGA i ornAna1.Contig11719 C 0 I 14 s xenTro2.scaffold_494 553515 116 + 924072 CTAGGGGAAC-ATTAGACTCTAGGGGAAC-ATTAGACTCTAGGGGAACACTGGACTCTAGGGGA-------------ACACTGGACTCTAGGGGAAC-ACTGGACTCTAGGGGAAC-ACTGGACTCTAGGGGA i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 63101709 116 - 400509343 CTGGACTGGG-ACCAGGCTCCGGGCTGGG-ACCAAGCTCTGGGCTGGGACCAGGCTCCGGACTG-------------GGACCAGGCTCCGGACTGGG-ACCAGGCTCCGGGCTGGG-ACCAGGCTCCGGGCTG i fr2.chrUn T 365 C 0 s danRer6.Zv8_NA3296 6976 116 - 47964 TGAGAATGAT-ATCATACCCAAGAGTGAC-ATCATGTCTGAGAGTGACATCACGTCTGAGAATG-------------ACATCATACCCGAGAGTGAC-ATCATTTACTAGAGTGAC-ATCATGTCTGAGAGTG i danRer6.Zv8_NA3296 C 0 C 0 s petMar1.Contig22977 3869 103 - 15049 CCAGGTGGACTCTCAGGTCCCAGGTGGACTCTCATGGCCCAGGTGGA------------------------------CTATCATGGCCCAGGTGGACTATCATGGCCCAGGTGGACTATCATGGCCCAGGTGG i petMar1.Contig22977 C 0 C 0 e papHam1.scaffold21342 7533 86 + 39824 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-3456.000000 s hg19.chr4_gl000194_random 19850 34 + 191469 -ATACCTAGGCCCCTAGTAAACCT-CAGATTCTAGG s ponAbe2.chrUn 12344486 33 + 72422247 -ATACCTAGGCCCCTAGTAAACCT-CAGAGCCTA-G i ponAbe2.chrUn C 0 C 0 s papHam1.scaffold21342 7619 34 + 39824 -ATACCTAGGCTCCCAGTAGACTT-CAGGCTCCAAG i papHam1.scaffold21342 I 86 C 0 s ornAna1.Contig11719 2205 34 + 25579 -AGACAATAACCCCCAAGAGACAC-TGGCCTCCTAA i ornAna1.Contig11719 I 14 C 0 s xenTro2.scaffold_494 553631 33 + 924072 -ACAC-TGGACTCTAGGGGAACAC-TGGACTCTAGG i xenTro2.scaffold_494 C 0 T 386 s fr2.chrUn 63101825 33 - 400509343 -GGAC-CAGGCTCCGGGCTGGGAC-CAAGCTCCGGG i fr2.chrUn C 0 I 2 s danRer6.Zv8_NA3296 7092 26 - 47964 -ACAT-CACGTCTGAGAATGAAAT----ATTC---- i danRer6.Zv8_NA3296 C 0 C 0 s petMar1.Contig22977 3972 36 - 15049 ACTATCATGGCCCCAGGTGGACTCTCGGGGCCCAGG i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=6196.000000 s hg19.chr4_gl000194_random 19884 68 + 191469 TTGACATTCAGGCCCCCAGTAGTCATTTGGCCCCATGTGGACACTCAGGCGC--CAGGT----TCACATGATGT s ponAbe2.chrUn 12344519 67 + 72422247 TTGACATTCA-GCCCCCAGTAGTCATTTGGCCCCATGTGGACACTGAGGCGC--CAGGT----TTACATGATGT i ponAbe2.chrUn C 0 C 0 s papHam1.scaffold21342 7653 68 + 39824 TTGACATTCAGGCCCCCAGTGGTCATCTGGCCCCACATGGACACTCAGGCCC--CAGGT----ACACATGATGT i papHam1.scaffold21342 C 0 N 0 s ornAna1.Contig11719 2239 63 + 25579 GAGACA-GCA-GCCCCTGAGAGACATCTGCTTCCG---AGAGACACAGGCCTCACAGAG----ACACCTACT-- i ornAna1.Contig11719 C 0 C 0 s fr2.chrUn 63101860 58 - 400509343 GGGACC---AGGCTCCGGGCTGGGACCAAGCTCcggggtgggac-caggctc--cgggc----tggga------ i fr2.chrUn I 2 C 0 s petMar1.Contig22977 4008 52 - 15049 TGGACTCTCA-----------------TGGCCCCAGGTGGACTCTCAGGGTC--GAGGTGGACTCTCATGG--- i petMar1.Contig22977 C 0 C 0 e danRer6.Zv8_NA3296 7118 0 - 47964 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553664 386 + 924072 T a score=-2851.000000 s hg19.chr4_gl000194_random 19952 72 + 191469 CTTA-------ACTGGACACCAAGGGGCCAGTTTGATACCCAAGTCC-----TGTGTGGGTGCCAGGTCCAAGGTTACACTCAA s ornAna1.Contig11719 2302 68 + 25579 CCTAGAGAGACACAGGACCCCAAGAGAT----------GCCAAGCCC-----ACGAGAGACACTGACCCCCGAGAGACA-TCAG i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12344586 72 + 72422247 CTTA-------ACTGGACACCATGGGGCCAGTTTGATACCCAAGTCT-----TATGTGGATGCCAGGTCCAGGGTTACACTCAA i ponAbe2.chrUn C 0 C 0 s fr2.chrUn 63101918 63 - 400509343 ------------ccaggctccggggtgg---------gaccaggctccggggtggggtGGGACCAGGCTCCGGGCTGGGACCAA i fr2.chrUn C 0 C 0 s petMar1.Contig22977 4060 55 - 15049 CCTA-------GGTGGACTCTTATGGCCCAGGTGAACTCTCAGGGCC-----CAGGTGGACTCTCAG----------------- i petMar1.Contig22977 C 0 C 0 e danRer6.Zv8_NA3296 7118 0 - 47964 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e xenTro2.scaffold_494 553664 386 + 924072 T a score=6705.000000 s hg19.chr4_gl000194_random 20024 63 + 191469 GCCCCAAGTGGACAC-CAGGCCCTAGGTGAATAATACAACCCAGGTGGTCA--TTAGGCCCCAGAA s ponAbe2.chrUn 12344658 63 + 72422247 GCCCCAGGTGGACAC-CAGGCCCTAGGTGAATAATACAACCCAGGTGGTCA--TTAGGCCCCAGAA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2370 60 + 25579 CCTCCTGAGAGACAC-CAATCTCTGAGAGA--CATCAGCTCCCGAGAGACA---CAGGCCTCACAG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553278 63 + 924072 ACTCTAGGGGAACAT-TAGACTCTAGGGGAACATTAGACTCTAGGGGAACA--CTGGACTCTAGGG i xenTro2.scaffold_494 T 386 C 0 s fr2.chrUn 63101981 63 - 400509343 GCTCTGGGCTGGGAC-CAAGCTCTGGGCTGGGACCAAGCTCCGGGCTGGGA--CCAGGCTCCGGGC i fr2.chrUn C 0 C 0 s danRer6.Zv8_NA3296 7118 44 - 47964 --------------------CCCGAAAGTGACGTCATACCCAAGAGTGACA--TCATACACAAGAG i danRer6.Zv8_NA3296 C 0 C 0 s petMar1.Contig22977 4115 60 - 15049 GGTCCAGGTGGACTCTCATGCCCCAGGTGGAC------TCTCAGGTAGACTCTCTGGGCCCAGGTG i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-7566.000000 s hg19.chr4_gl000194_random 20087 54 + 191469 TGACACCAGCCCCCAGGTTAACAG-GAAGC---CCCCAGTGGGTACTTAGGCCCCAGG s ponAbe2.chrUn 12344721 54 + 72422247 TGACACCAGTCCCCAAGTTAACAG-GAAGC---CCCCAGTGGGTACCTAGGCCCCAGC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2430 54 + 25579 AGACACCTACTCCTAGAGAGACAC-CGGCC---CCCCACAGAGACATAAGTCTCCTGA i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249303 54 + 2504804 AGACAC---TTCGTGGATATATGG-GTATCAATACTCGGTAGAACCTTTGGCTCCAAG i xenTro2.scaffold_127 I 9387 C 0 s fr2.chrUn 63102044 42 - 400509343 TGGGACCAGGCTCCGGGGTGGGAC-CAGGC---TCCGGGCTGGGAC------------ i fr2.chrUn C 0 N 0 s danRer6.Zv8_NA3296 7162 34 - 47964 TGACATCACGTCTGAGAATGATAT-CATAC---CCAAG-------------------- i danRer6.Zv8_NA3296 C 0 C 0 s petMar1.Contig22977 4175 55 - 15049 GAATCTCTGGGCCCAGGTGGACTCTCATGC---CCCAGGTGGACTCTCATGCCCCAGG i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-32899.000000 s hg19.chr4_gl000194_random 20141 148 + 191469 TGGAC-ATCAGGCCTAATGTGGACACCCAGGATCAAGATGGACA-TCAGGACTCAGGTGGACATCTGGTGACAGGTGGAC-AACAAGCCT--------------GGTGTGTACCTTGTCCCCGGGTG---GTC-ATCAGGCCCCAGTTCAACACCAGT------CCCTGGGTGGA s ponAbe2.chrUn 12344775 148 + 72422247 TGGAC-ATCAGGCCTAATGTGGACACCCAGGATCAAGATGGACA-TCAGGACTAAGGTGGACATCTGGTGACAGGTGGAC-ATCAAGCCT--------------GGTGTATACCTTGTCCCCAGGTG---GTC-ATCAGGCCCCAGATCAACACCAGT------CCCTGGGTGGA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2484 124 + 25579 GAGGC-ACCGGCCCCCTGAGAGACATC---AATC-TGAGAGACA------------GTGGCCCCTGAGAGACAGAGGGCT-CACA----------------------GAGACACCTACTCCTAGAGA---GAC-ATGGGACCCCCGAGAGATGCCAAT------CCATGAGAGA- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249357 95 + 2504804 CAGAC-ATT-------TCGTGGATAT-----------ATAGGTA-TCAATACTCGGTAGAACCTTTGGCTCCAAGCAGAC-ATTT--------------------------------------CGTG---GAT-AT----------ATGGGTATCAAT------AC-TGGGTAGA i xenTro2.scaffold_127 C 0 C 0 s fr2.chrUn 122727505 125 - 400509343 TGGAC-ATCATGTGTAGGTTGGACATC-ATGTTTTGGCTGGACA-TCACGTGTAGGTTGGACATCACGTGAAGGTTGGAC-ATCACGT----------------------------------GAAGGTTGGAC-ATCATG-----------TGAAGGTTGGACATCACGTGTAGG i fr2.chrUn N 0 C 0 s danRer6.Zv8_NA3296 7196 146 - 47964 -TGAC-ATCATGTCTGAAAGTGACATC-ACGTCTGAGAATGACA-TCATACCCAACAGTGACATCATGTCTGAGAGTGAC-ATCACGTCT--------------GAGAATGACGTCATACCCGAAAGT--GAC-ATCATgggctctattt-tgacggt------ccatgcgcaga i danRer6.Zv8_NA3296 C 0 I 1080 s petMar1.Contig22977 4230 141 - 15049 TGGACTCTCATGCCCCAGGTGGACTCT-------CAGGTAGACACTCTGGGCCCAGGTGGACTCTCCGGGCCAGGTGGACTCTCATGACCCAGGTGGAATCTCAGGTAGACTCTCTGGGCCCAGGTG---GACTCTCATGGCCCTGGTGGA------------------------ i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-2346.000000 s hg19.chr4_gl000194_random 20289 35 + 191469 TTCCTCGGCTCCAGGTGGACATCCGGTCTTCAGCT s ponAbe2.chrUn 12344923 35 + 72422247 TTCCTTGGCTCCAGGTGGACACCCGGTCTTCAGCT i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2608 29 + 25579 --CACTGACCCCCGAGAGACACCAA----TATGAG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249452 35 + 2504804 ACCTTTGGCTCCAAGCAGACATTTTGTGGATATAT i xenTro2.scaffold_127 C 0 I 54 s fr2.chrUn 122727630 20 - 400509343 --------------TTGGACATCATGTT-TAGGCT i fr2.chrUn C 0 C 0 s petMar1.Contig22977 4371 20 - 15049 CTCTCATGGCCCAGGTGGAC--------------- i petMar1.Contig22977 C 0 C 0 e danRer6.Zv8_NA3296 7342 1080 - 47964 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=17744.000000 s hg19.chr4_gl000194_random 20324 60 + 191469 GAACATCAGACCCCAGGTGAACAC-CAGGTTTTAGGTGGACATT-AGGCCCCTGGTGGACAT- s ponAbe2.chrUn 12344958 60 + 72422247 GAACATCAGACCCCAGGTGAACAC-CAGGTCTTAGGTGGACATT-AGGCCCCTGGTGGACAT- i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2637 59 + 25579 AGACATCAGCCCCCTGAGAGACAC-AGGCTTCTTGAGAGACACT--GGCCCCTGAGAGACAT- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553341 60 + 924072 GAACACTGGACTCTAGGGGAACAC-TGGACTCTAGGGGAACATT-AGACTCTAGGGGAACAT- i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 122727650 60 - 400509343 GGACATCACGTGAAGGTTGGACAT-CATGTTTTGGCTGGACATC-ACGTGTAGGTTGGACAT- i fr2.chrUn C 0 C 0 s petMar1.Contig22977 4391 60 - 15049 ---TCTCATGGCCCAGGTGGACTCTCATGGCCCAGGTGGACTCTCATGGCCCAGGTGGACTCT i petMar1.Contig22977 C 0 C 0 e danRer6.Zv8_NA3296 7342 1080 - 47964 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-755.000000 s hg19.chr4_gl000194_random 20384 45 + 191469 AAAGTACCA-------GTGGACATCCATGCTGCAGGTGGACACCCAGCGCCC s ponAbe2.chrUn 12345018 45 + 72422247 AAAGTACCA-------GTGGACATCCATGCTGCAGGTGGACACCCAGGGCCC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2696 20 + 25579 --------------------------------CAGAGAGACACCTGGCCCCA i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249541 52 + 2504804 TAGGTATCAATACTCGGTAGAACCTTTGGCTCCAAGCAGACATTTCATGGAT i xenTro2.scaffold_127 I 54 C 0 s fr2.chrUn 122727710 44 - 400509343 CATGTGAAG-------GTTGGACATCACGTGAAGGTTGGACATCACGTGAA- i fr2.chrUn C 0 C 0 s petMar1.Contig22977 4451 46 - 15049 CAGGTCCCA------GGTGGACTCTCATGCCCCAGGTGGACTCTCAGGGTCC i petMar1.Contig22977 C 0 C 0 e danRer6.Zv8_NA3296 7342 1080 - 47964 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-9089.000000 s hg19.chr4_gl000194_random 20429 56 + 191469 AGATGGGCA-TCA------------------GGCCCCATTTG----------GACATTGAGGCCCCAG----GTGGA-TATCAGGCCTCA s ponAbe2.chrUn 12345063 56 + 72422247 AGATGGGCA-TCA------------------GGCCCCATTTG----------GACATTGAGGCCCCAG----GTGGA-TATCAGGCCTCA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2716 49 + 25579 AGA--GACA--CA------------------GGCCTCACAGA----------GACACC----TCCTAG----AGAGA-CACCAATCCATG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249593 74 + 2504804 ATATAGGTA-TCAATACTCGGTAGAACCTTTGGCTCCAAGCA----------GACATT----TCATGGATATATAGG-TATCAATACTCG i xenTro2.scaffold_127 C 0 C 0 s fr2.chrUn 122727754 48 - 400509343 GGTTGGACA-TCA------------------C------GTGA----AGGTTGGACATT--------GC----GTGAA-GATTGGACATCA i fr2.chrUn C 0 N 0 s danRer6.Zv8_NA3296 8422 58 - 47964 AGAGTGACA-TCA------------------CATCTCAGTGACATCATATCTGACAGT--------GA----CATAA-TATCAACCCTGA i danRer6.Zv8_NA3296 I 1080 C 0 s petMar1.Contig22977 4497 58 - 15049 AGATGGACTCTCC------------------GGGCCCAGGCG----------GACTCTCATGGCCCAG----GTGGACTCTCAGGGCCCA i petMar1.Contig22977 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-3495.000000 s hg19.chr4_gl000194_random 20485 50 + 191469 -GGTGAACCCAAGGTCCAACATAGACATCAGGCCTTAGGTTGACACTCAAG s ponAbe2.chrUn 12345119 50 + 72422247 -GGTGAACCCTAGGTCCAACATAGACATCAGGCCTTAGGTTGACACTCAAG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2765 33 + 25579 -AGAGACACCTGAG--------AGACACCAATCCATGAG---------AGA i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249667 43 + 2504804 -GTAGAACCTTTGGCTCCAAGCAGACAT-------TTTGTGGATATATAGG i xenTro2.scaffold_127 C 0 C 0 s danRer6.Zv8_NA3296 8480 44 - 47964 -GGGTGACGTCATGTCTGAAAGTGACATCATGCCTGAGAGTGACA------ i danRer6.Zv8_NA3296 C 0 N 0 s petMar1.Contig22977 4555 33 - 15049 GGTGGACTCTCAGGACCCAGGTGGACT------------------CTCAGG i petMar1.Contig22977 C 0 T 228 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-2440.000000 s hg19.chr4_gl000194_random 20535 32 + 191469 CACCA-------GATGGACTGCTGC-ACCTAAGCAGAAAA s ponAbe2.chrUn 12345169 32 + 72422247 CACCA-------GATGGACTGCTGC-ACCTAAGCAGAAAA i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2798 30 + 25579 CACCC-------GAGAGATGCCAAT-CCATGAG-AGACA- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2249710 39 + 2504804 TATCAATACTCGGTAGAACCTTTGG-CTCCAAGCAGACAT i xenTro2.scaffold_127 C 0 C 0 s petMar1.Contig22977 4360 33 - 15049 -------GCCCTGGTGGACTCTCATGGCCCAGGTGGACTC i petMar1.Contig22977 T 228 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=684.000000 s hg19.chr4_gl000194_random 20567 56 + 191469 TAGACCCCTATCTGGATATCTAAGATACAGGTATACAACA-AGCCCCAGGCTGACAT s xenTro2.scaffold_127 2249749 47 + 2504804 --------TTCATGGATATAT-AGGTATCAATACTCGGTAGAACCTTTGGCT-CCAA i xenTro2.scaffold_127 C 0 C 0 s ponAbe2.chrUn 12345201 56 + 72422247 CATTCTCCTATCTGGATATCTAAGATACAGGTATACAACA-AGCCCTAGGCTGACAT i ponAbe2.chrUn C 0 C 0 s petMar1.Contig22977 4393 57 - 15049 TCATGGCCCAGGTGGACTCTCATGGCCCAGGTGGACTCTCATGGCCCAGGTGGACTC i petMar1.Contig22977 C 0 C 0 e ornAna1.Contig11719 2828 0 + 25579 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-1361.000000 s hg19.chr4_gl000194_random 20623 91 + 191469 CCAGACCCC------------------AGGTGGACAC-CATACCCCAGCTGAAC-AGCAGGCAACAGTTTGGCAC------------CAAGTACCTAAGTGGAACAAAGCCTTAGGTGATTAC s ponAbe2.chrUn 12345257 109 + 72422247 CCAGACCCCAGGTGGACAATATGCCCTAGGTGGACAC-CATAGCCCAGGTGAAC-AGCAGGCAACAGTCTGGCAC------------CAAGTACCTAAGTGAAACAAAGCCTTAGGTGATTAC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_127 2249796 100 + 2504804 GCAGACATTTCATGGAT----------ATATAGGTAT-CAATACTCGGTAGAAC-CTTTGGCTCCAAGCAGACATTTCATGGATATATAGGTATCAATACTCGGTAGAACCT----------- i xenTro2.scaffold_127 C 0 I 78 s fr2.chrUn 63101702 91 - 400509343 CCAGACTCT------------------GGACTGGGAC-CAGGCTCCGGGCTGGG-ACCAAGCTCTGGGCTGGGAC------------CAGGCTCCGGACTGGGACCAGGCTCCGGACTGGGAC i fr2.chrUn N 0 C 0 s petMar1.Contig22977 4450 74 - 15049 TCAGGTCCC------------------AGGTGGACTCTCATGCCCCAGGTGGACTCTCAGGGTCCAGATGGACTC------------TCCGGGCCCAGGCGGAC------------------- i petMar1.Contig22977 C 0 I 64 e ornAna1.Contig11719 2828 0 + 25579 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=7437.000000 s hg19.chr4_gl000194_random 20714 40 + 191469 CAGGCCATAGGTAGTCATTAGTCTCCAGCTGGACAATAGT s fr2.chrUn 63101793 40 - 400509343 CAGGCTCCGGGCTGGGACCAGGCTCCGGGCTGGGACCAGG i fr2.chrUn C 0 C 0 s xenTro2.scaffold_494 553401 40 + 924072 TAGACTCTAGGGGAACATTGGTCTCTAGGGGAACATTAGA i xenTro2.scaffold_494 C 0 C 0 s ponAbe2.chrUn 12345366 40 + 72422247 CAGGCCATAGGTAGTCATTAGTCTCCAGCTAGACATTAGT i ponAbe2.chrUn C 0 C 0 e ornAna1.Contig11719 2828 0 + 25579 C e petMar1.Contig22977 4524 64 - 15049 I e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=10185.000000 s hg19.chr4_gl000194_random 20754 34 + 191469 CCCTAGGTGGATACCTAGGCCCCAGGTGGACACT s ponAbe2.chrUn 12345406 34 + 72422247 CCCTAGGTGGATACCTAGGCCCCAGGTGGACACT i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_494 553441 33 + 924072 CTCTAGGGGAACA-CTGGACTCTAGGGGAACACT i xenTro2.scaffold_494 C 0 C 0 s fr2.chrUn 63101833 33 - 400509343 CTCCGGGCTGGGA-CCAAGCTCCGGGCTGGGACC i fr2.chrUn C 0 C 0 s petMar1.Contig22977 4588 34 - 15049 GCCTAGGTGGACTCTCAGAGCCCAGGTGGATTCT i petMar1.Contig22977 I 64 C 0 e ornAna1.Contig11719 2828 0 + 25579 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=3349.000000 s hg19.chr4_gl000194_random 20788 143 + 191469 AGATCCCAAATTAACACAAAAACCAAGTAAAAAATCAAGCCCCCAGTGGACAACCAGGCCCTAGGTAAATACACAAATCTCAA------------------GCTGACACC--AGGCCCTATTTGGACAC-------CCAAGCCCTAGGTGGACTTCAGGCCACAGGTGAA s ponAbe2.chrUn 12345440 143 + 72422247 AGACCCCAGATTAACACAAAAAACAAGTAAAAAATCAAGCCCCAAGTGGACAACCAGGCCCTAGGTAAATACACAAATCTCAA------------------GCTGACACC--AGGCCCTATTTGGATAC-------CCAAGCCCTAGGTGGACTTCAGGCCCCAGGTGAA i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_127 2249974 157 + 2504804 GGAT---ATATAGGTATCAATACTCGGTAGAACCTTTGGCTCCAAGCAGACA--------TTTCGTGGATATATGGGTATCAATACTGGGTAGAACCTTTGGCTCCAAGC--AGACATTTCTTGGATATATAGGTATCAATACTCGGTAGAACCTTTGGCTCCAAGCAGA i xenTro2.scaffold_127 I 78 C 0 s fr2.chrUn 63101866 109 - 400509343 AGGCTCCGGGCTGGGACCAAGCTCcggggtgggaccaggctccgggctggga-ccaggctccgg-------------------------------------ggtgggacc--aggct-------------------ccggggtggggtGGGAC--CAGGCTCCGGGCTGG i fr2.chrUn C 0 C 0 s petMar1.Contig22977 4622 129 - 15049 ----------------CAGGGCCCAGGTGGACTCTCAGGGCCCAGGTGGGCTCTCATGCCCCAGGTGGACTCTCATGGCCCAG------------------GTGGACTCTCAGGGTCCAGTTAAGACGT-------TCAAGGCAGAGGTGAGGTGTCTGCCACTCATAAA i petMar1.Contig22977 C 0 N 0 e ornAna1.Contig11719 2828 0 + 25579 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-356.000000 s hg19.chr4_gl000194_random 20931 40 + 191469 CACTGAACTCTAGA-----AGGTCTTCAGGCCCTGTGTT--GACTAC s ponAbe2.chrUn 12345583 40 + 72422247 CACTGAACTCTAGA-----AGGTCTTCAGGCCTCGTGTT--GACTAC i ponAbe2.chrUn C 0 C 0 s xenTro2.scaffold_127 2250131 40 + 2504804 CACT---TTGTAGATATATGGGTATCAATACTCTGTAGA--ACCT-- i xenTro2.scaffold_127 C 0 C 0 s fr2.chrUn 63101975 39 - 400509343 GACCAAGCTCTGGG-----CTGGGACCAAGCTCTGGGCTGGGAC--- i fr2.chrUn C 0 C 0 e ornAna1.Contig11719 2828 0 + 25579 C e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-10512.000000 s hg19.chr4_gl000194_random 20971 53 + 191469 CTGGCCCCAGGGGGACACCAG--GC----ATAGATGAACTTCAGGCACC--AGCTGTACAT s fr2.chrUn 63102014 54 - 400509343 CAAGCTCCGGGCTGGGACCAG--GCT---CCGGGCTGGGACCAGGCTCCGGGGTGGGAC-- i fr2.chrUn C 0 I 18 s xenTro2.scaffold_127 2250171 55 + 2504804 TTGGCTCCAAGCAGACATTTGTTGG----ATATATAGGTATCAATACTC--AGTAGAACCT i xenTro2.scaffold_127 C 0 C 0 s ornAna1.Contig11719 2828 35 + 25579 CTGACCCCCGAGAGACACC------------------------GGCCCC--TGAGAGACAC i ornAna1.Contig11719 C 0 C 0 s ponAbe2.chrUn 12345623 53 + 72422247 CTGGACCCAGGGGGACACCAG--GC----ATAGATGAACTTCAGGCACC--AGCTGTACAT i ponAbe2.chrUn C 0 C 0 s petMar1.Contig9877 4789 34 - 22149 -------------------------gactctagatggtcatgtgactat--TGATTGTCAT i petMar1.Contig9877 N 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-6581.000000 s hg19.chr4_gl000194_random 21024 103 + 191469 CAGGTTCCAGGCAAATGTCCCAGCCCCAGGTGGATATCAAACCTCAGATGAACACCAGGCCCCAGGTAGACAT----CAAAAACCAGG-------------TGGACACTCAGGCCCCTAC s ponAbe2.chrUn 12345676 103 + 72422247 CAGGTTCCAGGTAATTATCCAGGCCCCAGGTGGATATCAAACCTCAGATGAAAACCAGGCCCCAGGTAGACAT----CACAAACCAGG-------------TGGACACTCAGGCCCCTAC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2863 74 + 25579 CAATCTCTGAG--------------------AGACATCAGCCCCCTGAGAGACATTGGCCCCCTGAGAGACAT----CA----------------------TAGAGACAGCGGCCCCCGA i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_127 2250226 73 + 2504804 TTGGCTCCAAGCAGACATTTTTTGGATATATAGGTATCAATACTCAGTAGAACCATTGGCTCCAAGCAGACAT----------------------------------------------- i xenTro2.scaffold_127 C 0 n 0 s fr2.chrUn 63102086 109 - 400509343 CAGGCTCCGGGCTGGGA-CCAAGCTCTGGGCTGGGACCAGGCTCCGGACTGGGACCAGGCTCCGGGCTGGGAC----CAAGCTCTGGGCTGGGAC------CAGGCTCTGGGCTCCCCTC i fr2.chrUn I 18 I 2 s petMar1.Contig9877 4823 90 - 22149 -------------------GCGACTCTAGATAGCTGTGTGACGCTAGATgaccatgtgactctagattGTCATGTGACATAGATGGTTGTGTGACTTTAGATGGTCATT----------- i petMar1.Contig9877 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-273.000000 s hg19.chr4_gl000194_random 21127 27 + 191469 TGAATATCCATCCCCAGGTGGACATCC s ponAbe2.chrUn 12345779 27 + 72422247 TGAATATCTATCCCCAGGTGGACATCC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2937 26 + 25579 GAGATAT-GGGCCTCACAGAGATACCT i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_1495 55519 27 + 60448 GGAGTAACCAGTCCTGGGGGAGTAACC i xenTro2.scaffold_1495 n 0 C 0 s fr2.chrUn 63102197 27 - 400509343 TGCTCAGCCATCAGTAGATCAGAATCC i fr2.chrUn I 2 N 0 s petMar1.Contig9877 4913 25 - 22149 TGACTGTGaatc--tagatggtcatgt i petMar1.Contig9877 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=2622.000000 s hg19.chr4_gl000194_random 21154 45 + 191469 ATCCCAAGGTGGACATGAGGCCACA----------------AATGTACACTTAAGCCTAAG s ponAbe2.chrUn 12345806 45 + 72422247 ATCCCAAGGTGGACATCAGGCTACA----------------GATGTACACTTAAGCCTAAG i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 2963 61 + 25579 ACTCCTAGAGAGACATGGGACCCCGAGAGATCCCAATCAATGAGAGACACCGATGTCCGAG i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_1495 55546 45 + 60448 AGTCCTAGGGGAGTAACAGGTCCTA----------------GGGGAGTAACCAGTCCTAGG i xenTro2.scaffold_1495 C 0 C 0 s petMar1.Contig9877 4938 50 - 22149 gactctagatggtcatgtgactgtG---------AATCTA-GATGGTCACGTGACTCTAG- i petMar1.Contig9877 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=3545.000000 s hg19.chr4_gl000194_random 21199 29 + 191469 GCAGACCCCAGGCCCCAGGAAAACTCCAG s ponAbe2.chrUn 12345851 29 + 72422247 GCAGACCCCAGGCCCCAGGAAAACTCCAG i ponAbe2.chrUn C 0 C 0 s felCat3.scaffold_133691 76850 29 + 233502 GTGACCTCCAGTGCCCAGGCAGGAGCCAG i felCat3.scaffold_133691 N 0 N 0 s ornAna1.Contig11719 3024 26 + 25579 --AGACACCGGCCTCCAGAGAGACATCA- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_1495 55591 29 + 60448 GGAGTAACCAGTCCTGGGGGAGTAACCAG i xenTro2.scaffold_1495 C 0 C 0 s petMar1.Contig9877 4988 29 - 22149 ATGGCCGTGTGAcactagatggtcatgtg i petMar1.Contig9877 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=2689.000000 s hg19.chr4_gl000194_random 21228 271 + 191469 GCTCCATGAGAGCACTCAGACCTCAGGTGGATGCATTGGTCCTAGGTAAAT-ACAAGGCCCCAGACAGACATCAGGCCCCAG-TGA---ACACCGGAGCCCAGGTGGGTACCTAGTCCCCAGGTGTGCAACAAGCAGA-AGGT-TGACCCAGTCCCTAGCTGAACTCTGGGCCCCAGCTGAACATGATAACCCAGATGGTCACCCAGGCTCCGGGTGAACACACGGTCTTAGGTAGACATCAGATCCCACATGAACACTCAAGCCCCAGGTAGATATC s ponAbe2.chrUn 12345880 271 + 72422247 GCTCCATGAGGGCACTCAGACCCCAGGTGGATGAATTGGTCCTAGGTAAAT-ACAAGACCCCAGGTAGACATCAGGCTCCAG-TGA---ACATGGGAGCCCCGGTGGGTACCTAGTCCCCAGGTGTGCATCAGGCAGA-AGGT-TGACCCAGTCCCCAGCTGAACTCTGGGCCCCAGCTGAACATCATAACCCAGATGGTCACCCAGGGTCCAGGTGAACACATAGTCTTAGGTGGACATCAGGCCCCACATGAACATCCAAGCCCCAGGTAGATATC i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 3050 210 + 25579 GCCCCCTGAGAG-ACACAGGCCTCACAGAGACAC-CTACTCCTAGAGAGAC-ACAGGGCCTCACAGAGACACCTACTCCTAG-AGAGAGACACGGGACCCTGAG----------------AGACGCCAATCAATGAGAGACAT-TGACCC----------------------------------------CCAAGA--GACA-CCGGCCTCCTGAGAGACAC-CAATCTCTGAGAGACATCAGCTCCCGCGAG---ACACAGGTCTCACAGAGACACC i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_1495 55620 214 + 60448 -TCCTAGGGGAGTAACCAGTCCTTGGGGAGTAAC--CAGTCCTGGGGGAGTAACTAGTCCTATGGCAGTAAAAAGTCCTTGG-GGA---GTAACCAGTCATAGGGGAGTAACCACTCCTTGGG----GAGTAACCAGT----------------------------------------------------CCTAGGGGAGTAACTAGTCCTGGGGGAGTAAC-CAGTCCTGGGGGAGTAACCAGTCCTGGGGCAGTAACCAGTCCTGGGGGAGTAACC i xenTro2.scaffold_1495 C 0 n 0 s petMar1.Contig9877 5017 250 - 22149 actcta-gatagtcatgtgactctagatggccgt-ctgactctagatggtc-atgtgactctagatagCCGTGTGACACTAGATGG---TCGtctgactctagatggtca-------------tgtgactcaaTATga-ccatgtgactc------tagatggccatgagactctagatggtcatgtgactctagatgatca-tgtgactctagatagCCGTGTGACTCTAGATGACCATGTGACACTAGATGGTCATGTCACTCT-AGATGGTCGTC i petMar1.Contig9877 C 0 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=24411.000000 s hg19.chr4_gl000194_random 21499 154 + 191469 AGGCCTTAGGTGTACACCAGACCTCAGGTGGGCATCTGGCTCCAGATGGCCATAGATGGATAACTAAGCCTCTCCTGGATATCAGGCCCCAGGTAGACACCAGGCTCCAGGCGAACATCTAGCCCCAGGGGGACATCCAGCCCCCGGTGAACAT s ponAbe2.chrUn 12346151 154 + 72422247 AGGCCTTAGGTGTACACCAAACCTCAGGTGGGCATCTGGCTCCAGATGGCCATAGGTGGATAACTAAGCCTCTCCTGGATATCGGGCCCCAGGTAGACACCAGGCTCCAGGCGAACATCTAGCCCCAGGGGGACATCCAGCCCCTGGTGGACAT i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 3260 101 + 25579 TATTCCTAGAGAGACACCGGCCCCC------------------------CCACAGA---------------------GACATCAGTCTCCTGAGAGACACTGGCCTCTGAGAG-ACATCAATC-----AGAGACA-CCGGCCCCGGAGAGACA- i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553474 124 + 924072 GGTCTCTAGGGGAACACTGGACTCTAGGGGAACATTTGACTCTAGGGG-----------------------------AACATTAGACTCTAGGGGAACATTAGACTCTAGGGGAACACTGGACTCTAGGGGAACACTGGACTCTAGGGGAACA- i xenTro2.scaffold_494 C 0 C 0 s petMar1.Contig9877 5267 143 - 22149 TGACTCTAGATGGCCATGTGACACTAGATGGTCGTCTGACTCTAGATGGCCATGTGAcactagatg-----------gtcatgtgactctagatggtcatgtgactctagatggtcatgtgactctagatggtcatgcgACTCTAGATgaccat i petMar1.Contig9877 C 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=-1016.000000 s hg19.chr4_gl000194_random 21653 212 + 191469 CAGGGCTCACATGGATAAACAGTTTACAGATGGGCAC----ctgccacaggtgcctcacctctactccctgaaacctcacttcccctcatg-------ggccttctgtccgacttggggtacccctagcc----gccctaggcacacactggactcgaaccaggggcgccagcgtccctggggctcagcgcaagggttcatgggaatacactttcgtccgtg---gggga s ponAbe2.chrUn 12346305 198 + 72422247 CAGGGCTCACATGCATAAACAGTTTACAGAT------------------ggtacctcacctctactccctgaaacctcacttcccctcatg-------ggccttctgtccaacttggggtacccctagcc----accctaggcgcacactggactcgaaccagggatgccagggtccctggggctcagcgcaagggttcatgggaatacactttcgtccgtg---gggaa i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 3361 210 + 25579 CAGGCCTCATAGAGACA-----CTCCTAGAGAGACACAGGACCCCGAGAGATGCC--------AATCCACGAGAGA-CACTGACCCCCGAGAGACACCGGCCTCCTGAGAGACATTAGCTCCTGAGAGACACTGACCCTTGAGAGACAATGACCCCG----AGAGACAACTGCTCCCGAgagaagcagtgt--ggcctagtgggtagagcctggggtgggagtcagagga i ornAna1.Contig11719 C 0 C 0 s xenTro2.scaffold_494 553598 69 + 924072 CTGGACTC-TAGGGGAA------------------------------------------------------------CACT-----------------GGACTCTAGGGGAACACTGG----------------ACTCTAGGGGAACACTGGACTCT----AGGGGA--------------------------------------------------------------- i xenTro2.scaffold_494 C 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=9298.000000 s hg19.chr4_gl000194_random 21865 85 + 191469 cccagtcctcacttctcggcggcgcag----tttttttttctctg---tctcaggtgcctcaccttcccctcatgggccttctgtccacctt s ponAbe2.chrUn 12346503 89 + 72422247 cccagtccccgcttctcggcggcgcagttgttttttttttctctg---ccccaggtgcctcaccttcccctcatgggcgttctgtccacctt i ponAbe2.chrUn C 0 C 0 s ornAna1.Contig11719 3571 86 + 25579 cccgggtcctcctcct-ggctccgccg-----cttgtcccctctgtgaccttgggcgagtcacatcccttttctgggcctcagtttcccctt i ornAna1.Contig11719 C 0 N 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=99841.000000 s hg19.chr4_gl000194_random 21950 1541 + 191469 ggggtacccctagcggcccgaggcataccctgggctcgaaccagggatgccagggtccccggggcgcagcgcaagggctgatggggagacactttcttccgtgggggacccaggccccgtttctctgaggcgcgttttttttttt-----tctgccccaggtgcctcaccttcacctcatgggccttctgcccgctttggggtacccctagcggctccaggcacaagctgggctcgaataagggtcgccagggtccccggggcccagcgcaagggttgatgggatgacactttcacccatgggggacccaggccccgcttctccgcagcgcgttt-------ttttttttttatttgccccaggtgactcaccttcccctcatgggccttctgtctgctttgggttacccctagcaggccagaggtgcaccctggattccagccagggatgccagggtccccggggcccagtgcaggggctgatgagaaggcactttcgtccgtggggtgcccaggccctgcttctctgtggcgcggttttatttttttcttttctgcctcaggtgccttacctctcctccctcaaacctcaccttcccctcataggctttctgcccgccatggggtaccccaagaggcccgaagcgcacccttgtcttgaaccagggatgccagggtcccctgggcccagctcaggggctgatgggaagacactttcgtccgtgggggaaccaggccccgcttctctgcggcacagtttttttttttttttctgcctcaggtgcctcaccttcccctcatgggccttctgcccgcttttgggtacccctagcgagcccaaggcgcaccctgggctcgaacgagggtcgccagggtcgacggagcccagcgcaggggctgatgggaagacactttcatccgtaggggacgcaggccccgctactccgtggttcggt-----------tttttttttttcctctgccccaggtgcctcacctttcctccctcaaacctcaccttccactcctgggctttctgcctgcgttggagtacccctagc-gacccga-gcgcaccctgggctcgaaccagggatgccagggtccctggggcccagtgcaggggctgatgggaagacactttcgtccgtgggggacccagggcccgcttctcggcggcgcgg------------------ttttttttctctgccccaggtgcctcac---------------------cttcccctcaggggccttctgcctacgttgggata-ccctagcagtcccgaggtgcaccctgggttcaaaccagggacgccagtgtccccagggcccagcgcaggggctcatcggaaggcactttcttccgtggggtacccaggccccgcttctaggcggagcggtttttaatttttttctgtgctccaggtgtctcaccttcccctcatgggccttctgcccgccttggggtacccctagcagg-ccgaggcgcaccctgggctctaaccagggatgccagggtccacaggcccagctcaggggcttatgggaagacactttcgtctgtgggggacccaagctctgctcctctg s ponAbe2.chrUn 12346592 1572 + 72422247 ggggtacccctagcggcccgaggcgcaccctgggctcgaaccagggatgccagggtccccagggcgcagcgcaagggctgatggggagacactttcttccgtgggggacccaggccccgcttctccgaggcacgttttttttttttttcctctgccccaggtgggtcaccttcccctcatgggccttctgcccactttggcgtacccctaacggcctcaggcacacgttgggctcgaataaggatcgccagggtccccagggcacagcgcaagggttgatgggaagacactttcacccgagggggacccaggccccgcttctccgcagcgcgtttttttttgttttttttttctctgccccaggtgactcaccttcccctcatgggcctt-tgcccgctttgggttacccctagcaggccagaggcgcaccctggattcgagccagggacgctagggtctccggcgcccagtg-aagggctgatgggtagggacgttcgtccgtggggt-cccaggcgccacttctgggcggcgcagtttt-ttatttttttctctgccccaggtg---------------------tctcacctttccctcatgggccttctgtctgccttggggtacccctagcaggccgaggcgcaccctgggctcgagccagggataccagggtccccgggaggcagcgcaagcgctgacgggaagacagtttcttctgtgggggacccaagccccgcttatctgcggcgcggttgttttttttttctctgccccaggtgcgtcaccttcccctcatgggccttctgcccgctttcgggtacccctagcg-gcctgaagcgcaccctggtctcgaaccaggaacgccagggtcccctgggaccagcgcaagggctaatgggaagacactttcgtctgttggggactcaggctccgcttctccgtggtgcggtgttttgttttgttttttttttttttctgccacaggtgcctcacctctccttcctcaaacctcaactgtccctcatgggatttctgcccgccttggggtacccctagtgggcccgaggcgttcccggggctcgaaccagggtctccagggtccacagggcccagcgcaggggctgatgggaaggcattttcctccgtggggtacacaggcccagcttctcctaggcgcggcttgtttttttgttgtttttttttttttctgccacaggtgcctcacctctcctccctcaaacgtcaacttcccatcatgggctttctgcccgacttggggtatccctagcag-cccaaggcgctccctggactcgaaccatggacactagggtcgccggggcccagcgcaggggctgatgggaaggtaccttcgtccgt-gggtacccaggccccgcttctcaaaggtgcgttt-----tttttttctccgccccaggtgcctcaccttcccctcattggccttctgcctgctttggggtaccacgagcaggcccgaggcgctcccgggtctcgaactagggtcgccaggttct-cggggctagcgcaggagctgatgggaaggcactttcgtcggt-ggggacccaggcccggcttctccg i ponAbe2.chrUn C 0 I 11 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=0.000000 s hg19.chr4_gl000194_random 23491 8 + 191469 caggtttt e gorGor1.Supercontig_0000130 83341 15770 - 116048 I e ponAbe2.chrUn 12348164 11 + 72422247 I a score=41170.000000 s hg19.chr4_gl000194_random 23499 755 + 191469 ttttttttttctcttccccaggtg---------------------cctcaccttcccttcatgggctttctgcccgcctttgggtacccctagcgggcccgaggcccaccctggtttggagccagggatgctagtgtccctggggcccagcgca-gcgctgatgggaagggacttttgtccgtggggaacccagggcccacttctccgaggtgagcttt----------tttttttttttctgccgcaggtgcctcacctctcctccctcaaacctcaccttcccctcatgagccctctgaccgcctagaggtaccgctagc-ggcccgaggcacaccctgtggct-gaaccagggacgccaggatccctgcagcccagcacaggcgctgatgggaagacactttcgttcgtggaggacccaggccccgtttctcagtggc-------------ttgtttttttttctctgcc-cgggtgc---------------------ctcaccttcctctaatgggccttttgcccgctttggggtacccctagccggccctattcgcaccctgcgctcgaaccaggg-tcgcagtgtccaagaggtccagcgcaaggcgtgatgggaaggcactttcgtcagtgggggacccaggccccgcttcgctgcggcgc-ctttttttttttctgccacaggtacctcaccttcccctcatgggctttctgtccgccttggggtacccccagc-tgcccaaggcgcaccctgggctcaaaccagggatgccagtgtccctggggcccagcacagggtctgatgggaaggcactttc s ponAbe2.chrUn 12348175 825 + 72422247 tattttttttttctgccacaggtgactcacctctcctccctcaaacctcaccttcccctcatgggatttctggcttcctcagggtacccctagcgtgccggagtcccttctggcccttgaaccagggtcgccagggtccagggggcccagtgcaggggctgatgagaaggcactttagtccgtgggggacccaggccccgcttctcctcggcacggtttttgttttttgttttttttttcctgccgcaggtgcctcacctctcatccctcaaacctcaccttcccctcatgggccttctgcccgctttggggtacacctagcgggcccgaggcgcacccag-gcctagaaccagggtcgcctaggtccacggggcgcagcgcaggggctgatgggaaggcacttttttccgtgggagacccaggccccgcttctccgtggcacggtttttggttttttgtttttttttctgccacaagtgcctcacctctcctccctcacagctcaccttcctctcacgggctttccaccggcgttagggtacccctag-cggcccgaggctctccctgggctcaaaccagggaccccaggttccccggggcccagcgcaggggctgatgggaaggcaccttcgtccgtggaggacccaggtcccgcttttctgcagcgcggttttttttcctctgccccaggtgcctcaccttcccctggtgggccttctgccggcttctgggtacccctagcgggcccgaggcgcacctggggctcgaatcagggtcgccagggtccatggggcccagtgcaggggctgatgggaaggcactttc i ponAbe2.chrUn I 11 C 0 e gorGor1.Supercontig_0000130 83341 15770 - 116048 I a score=10523.000000 s hg19.chr4_gl000194_random 24254 83 + 191469 tttcatggggaacccaggcctcccttctccgtggcgag-----gttttttttttttttctccgctccaggtgcctcacct----tccct------tca----------- s gorGor1.Supercontig_0000130 99111 98 - 116048 gtccctgggagacccaggcaccggttctccgctgcgcgttttttttttttttttttttttttgccacaggtgcctcatctctcctccctcaaacctca----------- i gorGor1.Supercontig_0000130 I 15770 I 156 s ponAbe2.chrUn 12349000 102 + 72422247 gtccgtgggggacccaggccccacttctctgtggctcg-------tttttttttctttttctgtgacaagtgcttcacctctcctccctcaaaactcaccttcccctca i ponAbe2.chrUn C 0 C 0 a score=8462.000000 s hg19.chr4_gl000194_random 24337 144 + 191469 tggg-cttctgctcactttggggtactgctagc-ggcccgaggcacacactgcgtttgaaccagggtcaccagggtccacggggccaagcgcaggggctaatggtaaggcacttttgtctgtgggggacccaggacccccttctcc s ponAbe2.chrUn 12349102 146 + 72422247 tgggttttccgcccgccgttgggtactcctagcagacccaaggcgcacccggggctcgaaccagtgtcaccagggtccacagggtccagtgcaggggctgatgggaaggcgctttcgttcgtgggggacccaggccccgcttctcc i ponAbe2.chrUn C 0 C 0 e gorGor1.Supercontig_0000130 99209 156 - 116048 I a score=42400.000000 s hg19.chr4_gl000194_random 24481 238 + 191469 gtggcgc-g-----ttttttttttttttctcccacaggtgcctcacttctcctccctcaaacctcaccttcgcctcatgggccttctgcctgccttgggatacccctagcag-cccgaggcgaatcctggggtcgaaccagggacgccagggtccctggggcccagtgcaagggctgatgggaagatactttctttcgtggggg-cccaggcaccgcttctccacggcgca-tattttttttctttc s gorGor1.Supercontig_0000130 99365 220 - 116048 gcggcgcgg-----tttttcttctttctctgctgcaggtg---------------------cctcaccttcgcctcatgggccttctgcccgccttggggtacccctagcgg-cccgaggcgaaccatggggtcgaaccagggacgccagggttcccggggcccagtgcaagggctgataggaagaccctttcgtccgtgggggacccaggcaccgcttctccgcggcgcagtttttttttcctttt i gorGor1.Supercontig_0000130 I 156 C 0 s ponAbe2.chrUn 12349248 246 + 72422247 gtggcgcgggttttttttttttctttttctgtgacaggtgcctcacctctcctccctcaaaactcaccttcccctcatgggttttccgcccgccgttgggtactcctagcagacccaaggcgcacccggggctcgaaccagtgtcaccagggtccacagggtccagtgcaggggctgatgggaaggcgctttcgtccgtgggggacccaggccccgcttctccgtggcgcg-ggttttttttttttc i ponAbe2.chrUn C 0 N 0 a score=64404.000000 s hg19.chr4_gl000194_random 24719 813 + 191469 ggctgccccaggtacatcaccttcccctcatgggccatctgcctgctttggggtactcctagtggagtgaggcgcaccctgggctcgaaccagagtcatcaggttccctgacgcccagcgtaagggctgatgggaagacactttcgtctgtggcggacccaggccccgcttctcagcggcgcggtttttttttttct-------------tgccacaggtgtctcacctctcctccctcaaacctcaacctcccctcatgggctttctacctgccttggggtacccctagcggcccaaggcgcaccctgggtttgagtcaaggtcgccagggtccacggggctcagcacagggcctgatgggaaggcactttcgtctgtgggggacccatgccctgcttctccgtggcgcgtttttttttttccttcctgccacaggtgcctcacctctcctccctcaaacctcaccttcccctcatgggccttctgtctgcattggggtacacctagcagcccgaggtgcactgtggact-------------ccagggtccctggggcccagcgcaagggctgatgggaagacactttcgtccgtgggggggacgcagtccccgcttctccgcggcgagg---------ttttttttttttctctgccccaggtgcctcaccttcccctcatgtgccttctgcacgctttggggtacccctagcggcccaaggcgcaccctgggctcaaacaatggaagccaggttccacggggccaagcgcagtggctgatgggaagacacgttc-ttcctcggggacccaggctcggcttctctgc--ggcgttttttttttctttt s gorGor1.Supercontig_0000130 99585 846 - 116048 ggctgccccaggtacctcaccttcccctcatgagccatctgcctgctttggggtacccctagtggaccgaggcgcaccctcggctcaaatcagggtcgtcagggtacccggggcgcagcgcaagggctgatgggaagacactttcgtccgtggcggacccaggccccgcttctttgcggcgcggtttttttttttttttttttttttttctgccacaggtgcctcacctctcctccctcaaacctcaacttcccctcatgggctttctgcccgccttggggtacccctaatggcccaaggcgcaccctgggtttgagccaaggtcgccagggtccatggggctcagcgcagggcctgatgggaaggcaccttcgtccgtgggggacccatgccctgcttctccgtggcgctttttttttt----tttctgccacaggtgcctcaccgctcctcccccaaacctcaccttcccctcatgggccttctgtctgccctggggtacacctagcggcccgaggtgcactgtgggctcgaaccagagaagccagggtccctggggcccagcgcaagggctgatgggaagacactttcgtccgtgggggggacccagtccccgcttctccgcagcgagggttttttttttttttttttctctctgccccaggtgcctcaccttcccctcatgggccttctgcacacttt-gggtacccctagcggcccgaggcgcaccctgggctcgaaccatggaggccaggttccatggggccaagcgcagtggctgatgggaaggcactttcgtccctgggagacccaggcaccggttctccgctgcgcgttttttttttttttt i gorGor1.Supercontig_0000130 C 0 I 146 a score=0.000000 s hg19.chr4_gl000194_random 25532 117 + 191469 ccccagttgcctcactttcccgtcatgggctttctgcccgccttgaggtacccctagcgggcccgaggcgcaccctggtttcgagccagagacgctagggtctccggggcccagtgc e gorGor1.Supercontig_0000130 100431 146 - 116048 I a score=26719.000000 s hg19.chr4_gl000194_random 25649 442 + 191469 agggctgatgggtagggacattcgtccgtgggggacccaggccccacttctgggcggcgcagttttttatttttttctctgccccaggtgtctcacctttccctc-atgggccttctg----tcttggggtacccctagcagg-ccgaggtgca-cgctgggttccagccagggataccagggtccccagggcgcattgcaagcgctgatgggaagacagcttcttctgtgggggacccaggccccgcttatccgcggcgcggttgttttttttttttctctgccccacgtgcatcaccttcccctcatgggccttctgcccgcttttgggtacacctagc-ggcctgaagcacaccctggtctcgaaccaggtacgccagggtcccctgggcccagcgcaagagctgatgggaagacactttcgtccgttggggacccaggctccgctt s gorGor1.Supercontig_0000130 100577 445 - 116048 agggctgacggaaagacactttcgtcattgggggacccaggccccgcttctccgcggcgcggttttt--cttctttctctgctgcaggtgcctcaccttcccctcaaggggctttctgctctccttgaggtacccctagcgggtccgaggtgcacccctggtttccagccagggacaccaggttccccagggcccagcgcaggggctgatgggaaggcaccttcgttcgtggaggagccaggccccgcttctctgcagcgca---gtttttttttttcctttgccccatgtgtctcaccttcctctcatgggccttctgccggcttctgggtaaccctagcgggcgcgaggcgcacctagggctcgaaccagggttggcagggtctatggggcccagggcaagggctgatgggaaggcactttcatccgtgggggacccaggccccgctt i gorGor1.Supercontig_0000130 I 146 N 0 a score=169516.000000 s hg19.chr4_gl000194_random 32403 1956 + 191469 CCAtaatatccagggagggagagaatgattttattttattttttttgagacagaccctcgctctgtcgcccaggctggagtgcagtggcctgatcttggctcactgcaagctccgcctcccaggttcacaccattctcctgtctcagcctccctagtagctgggactacaggcgcccaccaccgcgcccggttaattttttgtatttttagtagagacggggtttcaccatgttagccaggatgatctcgatctcctgacctcgtgatccacccacctcggcttcccaaagtgctgggattacaggtgtgagccaccgcgcctagccagagagaatgattttactccccatatcgcaggggatttacattcccctgcgttatttttcgtaatatccagggggaagatgaagatattactccccatatagcatgggagaacaaatccctgcgatattgttcataatatctctagggggagagaatgatatttctccttttattgcaggaagtgtacaccccccttgcgatattgtttataatatctagtgggggagaggacgatgttactccccatattgcagggtgtgtacaaccccctagaatattgttcataatatccacgcggggaggagatgatgttactacccatatcgccagggtgtactgccccctgccatattgtttgtaatatccaggctggaaaaggatgatattactccctgtatcacaggggatgtacacctccctgtgacgtaatatccagggtgggagaggagtatattactccctataaggcagagtgtgtatacacccctctgtgatattgttcataatatccactgggagatatgatattactcccaatatcgtaaacacctcatgtgtacaccatctgtgatattgtttgtaatatccagtaggggagaggatgatactactttccacatcccagggggtttacacccctctgtgatacagtttgtaatatccagatggggagagggttatattactcctcatatcgcaggacacgtacacccgcctgtgatattgtttgtaatattgttcccaatatcattttcccccatggatacaggaacaacatcgcataggacttgtacaccccctgccatactgggagtagtagtgttttatcccttgctggacattaggaacaataccatgggggggtgcacagcccctgtgatattgacagtaatataatccactatcccctaaatataggaaaaatatcacaagagggatgtacacacttggtgatattgaaagtgatatgatcctctccctacctggatattaggagcaatatcacagaaggg------------------------------------------------------------------------ttgtacactccctgcgatattgacagtaatatcctctacccccctggatattaggaacaatatcacagaagaggtgtacacccactgtgatactgaca---atttcctctccccccctggggatataaggaacaataccacgggggggtgtacaccccctgtgatattgacagtaatatcatcctctctcccccagatattagtaacaatatcactgaaggggtctacaacccctgtgatattgacagtaatatcctctcccccccagatattaggaacaataccatgggaggatgtacaccccctgtgtcattgacagtaatatcaacctctccccccaccggatattagaaagaataccacgggggctgcacaccccctgtgatattgggagtaatatcacccactatcccctaaatattaggaacaatatcacaaggcggggagaacaccctctgcgatattgggagtaatgtcatcctttccctgcccctgcatactaggaataatatcacaggggatgtacacccccatgcgctattgggagtaacatcaccctttcttcccatggatattagaaacaatatcacagaagtggtgtacacacgctgCACTGTA s panTro2.chr4_random 3162175 2025 + 6711082 ccataatatccagggagggagagaatgattttattttatttttt--gagacagagcctcgctctgtcgcccaggatggagtgcagtggcctgaagttggctcactgcaagctccgcctcccaggtttacaccattctcctgcctcagcctccctagtagctgggactacaggcgcccaccaccatgcctggttaattttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgacctcgtgatccacccgcctcggcttcccaaagtgctgggattacaggtgtgagccaccgcgcgtggccagagagaatgattttactccccatatcgcaggggatttacattcccctgcgttatttttcataatatccagggggaagatgaagatattactccccatatagcatgggagaacaattccctgcgatattgttcataatatctctggggggagagaaagatatttctccttttattgcaggaagtgtacaccccccttgcgatattgtttataatatctagtgggggagaggacgatgttactccccatattgcagggagtgtacaaccccctagaatatggttcataatatccacgcggggaggagatgatgttactacccatatcgccagggtgtactgccccctgccatattgtttgtaatatccaggctggaaaaggatgatattactccctgtatcacaggggatgtacacctccctgcgatgtaatatccagggtgggagaggagtatattattccctataaggcagagtgtgtatacacccctctgtgatattgttcataatatccactgggggatatgatattactcccaatatcataaacacctcatgtgtacaccatctgtgatattgtttgtaatatccagtgggggagaggatgatactactttccacatcccagggggtttacacccctctgtgatacagtttgtaatatccagagggggagagggttatattactcctcatatcacaggacatgtacacccccctgtgatattgtttgtaatattgttcccaatatccttttcccccatggatataggaacagtatcgcataggacgtgtacaccccctgccatattgggagtagtcgtgttttctcccttgctggacattaggaacaataccatgggggggtgcacaccccctgcgatattgacagtgatatcatccactatcccctaaatataggaacaatatcacaagggggatgtacacacttggcgatattgaaagtgatatgatcctctccccatctggatattaggaacaatatcacagaaggggtgtacaccccctgtgatattgacagtaatatcttctcccccccggatattaggagcaatatcacagaggcgttgtacactccctgtgatattgacagtaatatcctct-cccccccagatattaggaacaatatcacagaagaggtgtacacccactgtgatattgacagtaatttcctctccccccc---ggatattaggaacaataccacgggggggtgtacaccccctgcgatattgacagtaatatcatcctctcccccccagatattagtaacaatatcaccgaaggggtctacaccccctgtgatattgacagtaatatcctctaccccccagatattaagaacaataccacgggaggatgtacaccctctgtgacattgactgtaatatcaacctctcgcccccctggatattaggaagaataccatggggggtgcacaccccctgtgatattgggagtaatatcacccactatcccctaaatattaggaacaatatcacaaggcagggagaacaccgtctgcgatattgggagtaatgtcatcctttccctgcccctgcatactaggaataatatcacaggggatgtacacccccatgcgctattgggagtaacatcaccctttcttcccatggatattaggaacaatatcacagaagtggtgtacacacgctgCACTGTA i panTro2.chr4_random N 0 C 0 a score=81508.000000 s hg19.chr4_gl000194_random 34359 381 + 191469 TAGAACaaagcaggcggaggaaggtgggataaccttgctagctgaagcttctggct-------ctctttttttcttcttcccgtgcaggaaacttgcttcccttcttcctgcccttggacatgagactccaggttcttatgcgtttggactctgggacttgcaccagtggcttccccgaggctctcaggcccccggcctcagactgaagactgcactgcgggctttcctggttttgaggcttttggacttggactgagcc--actactagcttctctctttccctacctggcagacagcctgttgtgggac--tgccttctaaccgtgtgaaccaattctctctggtaaactcccttatacatatacgtgtatcttgttggttctgtccctc s rheMac2.chr3 119407683 379 + 196418989 tagaacaaagcaggctgaagaaggtgggataaccttgctagctgaggcttcttgcttagaagcctctttttttcttcttcccgtgcagtaagcttgcttccgttcctcctgcctttggacatcagactctaggttcttccgcctttggactctaggacttgcaacagcgtcttccctgaggctgtcatgccctcagcctcagactgaaggttgcactgcgggcttccctggttttgaggcttttggacttggactgagccaaatgaata-------------tatacataatccatgtttaattgtgggactttgccttgtaatcgtgtgagacaattctctctaataaactcccttttacatatatgtgtatcctattggttctgatcctc i rheMac2.chr3 N 0 C 0 s panTro2.chr4_random 3164200 381 + 6711082 TAGAACaaatcaggcagaggaaggtgggataaccttgctagctgaagcttctggct-------ctctttttttcttcttcccatgcaggacacctgattcccttcttcctgcccttggacatgagactccaggttcttatgcctttggactctgggacttgcaccagcggcttccccgaggctctcaggccctcggcctcagactgaagactgcactgcgggctttcctggttttgaggcttttggacttggactgagcc--actactagcttctctctttccctacctggcagacagcctattgtgggac--tgccttctaaccgtgtgaaccaattctctctggtaaactcccttatacatatacgtgtatcttgttggatctgtccctc i panTro2.chr4_random C 0 C 0 a score=322660.000000 s hg19.chr4_gl000194_random 34740 910 + 191469 tggagaaacctgactaatacaTTTTGTATATTTTTCCTCCACTGCCCTTTCCTCTGCTTCTAGGCTTACCTAGAC--CACCACCATTCTTTCCCCCT-------TTCTAAAGTAAAAGTTGTTTTTTTCTCACTAAATGCATGGTATTCTGCCCATTTTCCATGGCTTCC--CTCAGCCCTGCTCTGTTTA---TTCTTGCTATCTTAAGAGGAAATCCCTGCCTCTTTCATGGCTTTTCCCACTTGGTCTACTTACTGGTTTCTGTTGTTCTCAGAGACACACTGAGACCTTTCACATCTCACTGTCACTTCTTGGAAGGG--CTCTCTACCTCGTCTGCCTGCTGAGCAACCTCTTGGAG---------TGACGCGGGCACTCTTGAGTCACTGA-------ACTTGAGCTATTTGGTGTT-AGTATGTTAATTTATCTTCTTAGACCACTTACCACTTCCTTAAC--TTCAAAAGAAAAGAATAAGTATTATTTTCCATGGTTGATATGAAGAGTAGAAATAACTTATACAAAATACATTGCAGTTAAGTGAT----AATAAATGGCTGTGAATGTCCTTATTAATGTTATTC----TATCAGTCTCAGCTCAGATACCATCTGCTCTGTGAGCTCTGCTCTGAATCATATCTGCTTCTTCTCTGGGTTCCTTGTGCTCTGTTCTTAACTACTTTAAAGCAGTAATTGTTCTGATTCTAATTAGTGATGCTTCCCAATAAAATTTTAATTTTGTAGATCTCTTCCCCCTACCCCTGCCCCAGCCTAACCAGTGTTTTCTTA---CTTTTTTGT--GTACAGGCTACATCACTGGTCTTCTTTTATTTGTGGCTAAATAAATGTTGTGTTAGAAGAGTAAAGAGTTCCCAGTTACATGGGATCTATAGTTCTACAAAATGAATGTATACATAATCCATGTAAATACTTCACttatt s panTro2.chr4_random 3164581 905 + 6711082 tggagaaccctaactaatacaTTTTGTTTATTTTTTCTCCACTGCCATTTCCTCTGCTTCTAGGCTTACCTAGAC--CACCACCATTCTTTCCCCCT-------TTCTAAAGTAAAAGTTGTTTTTT-CTTGCTAAATGCATGGTATTCTGCCCATTTTCCATGGCTTCC--CTCAGCCTTGCTCTGTTTA---TTCTTGCTCTCTTAAGAGGAAATCCCGACCTCTTCCGTGGCTTTTCCCACTTGGTCTACTTACTGGTTTCTGTTGTTCTCAGAGACACACTGAGACCTTTCACATCTCACTGTCACTTCTTGGAAGGG--CTCTCTACCTCGTCTGCCTGCTGAGCAACCTCTTGGGG---------AGACGCGGGCACTCT-AAGTCACTGA-------ACTTGagctatttggtgtt-ggtatgttaatttatcttcttagaccacttaccacttccttaac--ttcaaaagagaagaataagtattattttccatggtcgatatgaagagtagaaataacttatacaaaatgcattgcaGTTAAGTGAT----AATAAATGGCCGTGAATGCCCTTATTAATGTTATTC----TATCAGTCTCAGCTCAGATACCATCTGCTCTGTGAGCTCTGCTCTGAATCATATCTGCTTCTTCTCTGGGTTTCTTGTGCTCTGTTCTTAACTACTTTAAAGCAGTAATTGTTCTGATTCTAATTAGTGATCCTTCCCAATAAAATTTTAATTTCGTAGATCTCTTCCCCCCACCCCTGCCCCAGCCTAACCAGTGTTTTCTTA---CTTTTTTGT--GTACAGGCTACATCACTGGTCTT---TTATTTGTGGCTAAATAAATGTTGTGTTAGAAGAGTAAAGAGTTCCCAGTTACATGGGATCTATAGTTCTACAAAATGAATGTATACATAATCCATGTAAGTATTTCACTTATT i panTro2.chr4_random C 0 C 0 s rheMac2.chr3 119408062 918 + 196418989 tggagaacc----ctaatacaTCTTGTTTATTTTTTCTCTGCTGCCTTCTCCTCTTCTTCTAGGCTTACCTAGAC--CACCACCATTCCTTCCCCCT-TTCCTATTCTAAAGTAAAAGTTGTTTTTT-CTCACTGAATGCATGGTATTCTGCCCATCTCCCATGGCTTCC--CTCAGTCCTGCTCTGTTTATTTTTCTTACTCTCTTAAGAGGAAATTCCTGCCTCTTCCTTGGCTTTTTCCAATTGGTCTACGTACTGGTTTCTGTTGTTCTCAGAGACACACTGAGACGTTTCACGTCTCACTGTCACTTCTTAGAAGGGCTCTCTCTACCTGATCTGCCTGCCGAGCAACCTCTTGggg---------agacatgggtactcctgagtcattga-------acttgagctgtttggtgtt-ggcatgttaatttatcttcttacaccacttcccacttccttaac--gtcaaaagacaagaataattattattttccatggttgatgtgaagagtacaaataacttatacaaaatgcattgcagttaggagag----aataaatggcagtgaatgcccttattaatgttattc----tatcagtatcaGCTCAGATACCATCTGTTCTGTGTGCTCGACTCTGAATCATATCTAGTTCTTCCCTGGGTTCAGTGTGCTCTTTTCTTAACTGCTTTAAAACAGTAATTATTCTGATTCTAATTAGTGATCCTTCCCAGTAAAATTTTACGTTTTTAGATCTCTTTCTCCCACCCCTGCCCCAGCCTTAGCAGTATTTTCTTATTTCTTTTTTGTGGGTACAGGTTAAATCACTGGTCTTCTTTTACTTGTGGCTAAATAAATGTTTTGCTGGAAGAGTAAAGAGTTCCCAGTTCCATGAGATCTATAGTTCTACAAAATGAATATACACATAATCCATGTAAATATTTCAC---tt i rheMac2.chr3 C 0 C 0 s equCab2.chr4 67746874 913 - 108569075 tagagatacttaatttatgcgtcttgcttattttctctctgttttccTTTCCTTTTCCTCTA-CCTTAGCTACGCCACACCACCGTTCATTCCCCTCCCTCCTGTCCTAAAGTAAAGGTGATTTTTT-CTCTTCAAATGCATGGCATTCTGCCCATTTCCTACGGCTGCCCTCTCAGCCCGGCTCCGTTTATTCTTCTTGTTCTCTTAACAGGGAATCTCTTCCTCTTCGTTGGCTTTTTC--ATTGGTCTATGTACTTTTTCAAGCTTTCCTCAGGGACACATTGGGAGCTTTCATGTCTCATCACCATTTCCTGGAAGGACTCTCTGTGCCTGGCCTACCTGCTAAGCAACTTCTGGgagccctcaagtcaacacgtcgggtttgaggcccttggctcagccgcttaatagctttggtgttgggcctgttaatttacattcttggg-------ccacttccttaactgtcaaaaagggaagaagtattattcttttccatggttggtatgcagagtagaaaaaacttatacaaaatgcatcgcagcttggaagtactcaataaatggctg------------ctaatattatCCTAAATATCagtctctgctcagatatcatctgctctgtgaggtctactctgaaccatacttagttgttttctatgttcattgcactctattgttac---ctttaaagcaattattattctgattttaattggtggtccttcccagtaagtttttaatcttttagagcagagactcat----ttttttcagctttACCAGT-TTTTCTTA---TTCTTTTCT--TTAT--------CCACTAGTCTTCCTGTATTTGGGACTACATAAAT-TTTTGTTGGAAGAATAGATGGTTCCCAGTTTTAGGAAATCTGTGGTTCTACCAAATGCATATGTACACAACCTATGTTAATATTCCCCTTTTT i equCab2.chr4 N 0 I 4480 a score=11211.000000 s hg19.chr4_gl000194_random 35650 50 + 191469 ttaaaacaattttttaatttttaaattaaatttaatttGTGCATGTGTGT s panTro2.chr4_random 3165486 50 + 6711082 TTAAGACaattttttaatttttaaattaaattaaatttGTTCATGTGTGT i panTro2.chr4_random C 0 C 0 s rheMac2.chr3 119408980 50 + 196418989 ttaaaacaatttttaaatatttagataaaatttaatttGTGCATGTGTGT i rheMac2.chr3 C 0 I 2239 e equCab2.chr4 67747787 4480 - 108569075 I a score=6715.000000 s hg19.chr4_gl000194_random 35700 75 + 191469 GAGACCAGAGTGAGAACAGAGATGGCGGTGGTGAGGGGCAGTggtctcaccatgttgcccaggctagtcttgaac s panTro2.chr4_random 3165536 75 + 6711082 GAGACCAGAGTGAGAACAGAGATGGTGGCGGTGaggggcggtggtctcaccatgttgcccaggctggtcttgaac i panTro2.chr4_random C 0 C 0 e equCab2.chr4 67747787 4480 - 108569075 I e rheMac2.chr3 119409030 2239 + 196418989 I a score=8860.000000 s hg19.chr4_gl000194_random 35775 40 + 191469 tccccttcaagtgccaccctcctcacctggccccccTCAC s rheMac2.chr3 119411269 39 + 196418989 TCCCCTTCAACTGCCCCCGTCCTCACCTGG-ACCCCTCAC i rheMac2.chr3 I 2239 C 0 s panTro2.chr4_random 3165611 40 + 6711082 tccccttcaagtgcccccctcctcacctggccccccTCAC i panTro2.chr4_random C 0 C 0 e equCab2.chr4 67747787 4480 - 108569075 I a score=540190.000000 s hg19.chr4_gl000194_random 35815 1490 + 191469 CTTGCCTCCTCCC------CTCTCACTCCTATGCCAACTCCTGCCATTCCCTACCCC-CTCTGTAGACTGCAAGACTCATCAAGTGACTTGCTGAGCAAACTCTGCTGAGAAGAGATCTGTTTAGGGACACAGGAGGCCAAGTACACAAAAAAGCAAAAGAACTAGCATGCCTTTT-TCAATGGATGTCTATTTTACAGGGCTGGCTTCAGATTATT---ATAGCTTTAAATAAAAGGACCGTTTT-GTCATCTCGGCCCATGGCCTACATTATTTCTTTACTGTCCATTGCCCTGGGCACTTGACTAATAATTTAACAGCAGTTTTTTTTTTTT-------TTTTAAATCATGATTCATTGCATTGCTGTAAGAGTAATTAGAGGTAAAGTAGGGCTTGAAACTGCCT-GTAGTTGGTTACTTACTGAGATCTTAGCATCATTGTCAGGTGAGAGGGTGAAGTTTTAATTAGCGCTAAGTGGGATAGAAATTCAATGCACTGAAActgcagtgtccaattcagtaggtgc-------------tagtcacctg----taactgttgagcacttgtaatcctggctagtcctaattgagatg--tgt-tgtgttaaatacactggattttgtcg-ttggagtgggaagaacagtgtagaatatctgcttgat-tttttttatatttat----tacatgttaaaattattactatgattactatttgggacatactg--agttaagtatatttaaaattaatttcacc-tttt-------cttttaatggggcttactagtacatttaaaattacatacgtggctcacatatttattggacagcacAGCTCTAGAAGTTTAGGAAGAAATAAGAAAAA-TATTGAGAATAGGTAGCGACAGTAGG------------AAGTTTGACCTCCT---GTAAGACTGATTCCAATAA-AACTAATAGGTGATAGTTTTAATTGGCTTTTTCCTACTAGAAGAAGTAAGTGTACTTTACATGCCTCTTTGTTCTCCCTCTTTCCCCTTCAATTTAGTGGTTAGCGTGTATTTACTACATCAGGCTTAAT------ATTCACTAAACAGTGTTAGGAAGACTTAGGTAAATGATTCCCTGATGAACACACTTGATATTCAAAGCACTTTCCTAACCCATTTTTAATTGGAATAGAGTCAAATGTAGATGGCTTATTAGTAGTCATCTCATTTAAATCTCATGGAATTTTCCTACTAAATCTCAAAGTAAACAATTTGTTATA---------GGCTGTTTTGTCAAGTTTATGGAAGGGACAGCATAGGACATGTGGTACTTCATTTCCAAATTGCTTGAGATGGTTTTCATTATAATCATACATTATTTGCTTCTGGTTTTCCAGAAAAGCCAGCTAAACCTGTGGTTCATTTAGATATAAATGAAATATCCACAAAGGATTGCTCAAAGTGACTTATGCAACTTGAATATATA-TTTTTTCTGTAGGGTGTTTATTCCAAATTATCTGGCCATTTGCTGC-AATTTGCAGTTTTTT---AGAAAACACCAAA-----TATTTCTCAAGTTAGAG s equCab2.chr4 67752267 1497 - 108569075 CTTTCCCCCTCCCCCACGGCTCCCCCTCTTCACCTAGCCTCCCCCCTCCCCCACT---CTCTTTCGACTGCAAGACTCAACAAGTGGCTTGCTCAGCAAGCCCTGCCAAGAAGAGATTTGTTTAGGGCGACAGGCGGCGCCATATGGAAAAAGGCAAAAGAACTGGCATGCCTTTTCTCAATGGGTATCTTTTCCGTAGGGCTGGCTTCAGATTAATGTTACTATTTCGAACAATGGGACGCTTTT---CTTCCTGGCCCGTGGGCTACGTTATTTCTTCACTGCCCATTGCCCTGGGTGCTTGACTAATAATTTAAAAGCA-------------------CTGATAACTCTTTTTTCATTG----ATTGTAAGGTAGATTAGCATTAACTTAGGCCTTGAACCTGTCCAGGAGTTGG----TTACTGAGATCTTAATATAAAAATAAGGTGATATGGTGAAGTTTAAGTAGTTGGTAAGAGGAATAGAAATTAAATGCACTGAAATGgctctggccag-tcggtagccacatatggccacgtatggtcacatgtgactgactgtcgagaacttgaaatgctggctagtccgaattgagttggctgtaagtgtaaagtacactggatcttgacgacttaagggaggaaagcaatgtaaaatatctcatcaat----ttttatactgat----tacatgttgaaatga----------tactgttttcggcgtattgtaaataaaatatatttaaaatgaatttcatc-ttttaaaaatgttcttagtggggc-tactagtatatttaaaattgcatatgtggctgacatttctcttggacagcactgCTCTAGAAGTTTGTAAGGAAGTAAGGAAAATTACTGGGAACAGGTAACAGCAGTAGGAGAAAACATTGCAAGTAGGACCTTTGCAAGTTAGACTGATTGCAAAAATAACTAATA-GTGATAGTTTTAATTTGCTTTTTCCTGCT-GGAGAAATAAGTGTGCTTCACAAA---CTTTGTTC-CCTTATTCCCCCTCCAGTTTAGTAATTAATGTCTGTTTCCTAGACCACGCTTACTAATGGGATTTACTATGTAGCATTAGGAAGACTTAGGTAAACGAT----TAATGACCTCACTTGATTTTCAAAGCACTTCCT--AGCCAGTTTTAGTTGGTGTAGAGTCAAAGGTAGATGGCTTATCAGTAGTCATCTCACTTAAATCTCAGTGAATTTTCCCACTAAATCTCAAAGTAAATATCTCATTATA---------GGTTATTTGGCCAAGTGCCTGGAAGGGACTGCATAGGACATATGATACTTCATTTCCAAGTTGCTTTAA-------TTAATACCATTTTCCATTAATTTGATCTGGTTTGGTTAAAAGGCCAAACAAAGCTTTGGTTCATTTAGATGCAAATGAAATGTCCTGGGAGGATTGCGCGAAGTGAGTGATGTAAAGTGAACATATGTTTTTTTCTTTATGGTTTTTGTCTCAAATTATCTAGACGTTTGCTGCAAATTTGCA--TTTAA---AAAAAATACCAAAA----TAGTTTCCAAGTTACAG i equCab2.chr4 I 4480 C 0 s rheMac2.chr3 119411308 1506 + 196418989 CTT-CCTCCTCCC------CTCTCACCCC---GCCA-CCCCTGCCAGTTCCCACCCCTCTCTGTAGACTGCAAGACTTAACAAGTGACTTGCTGAGCAAACCCTGCCGAGAAGAGGTCTGTTTAGGGACACAGGCGGCCAAGTACAGAAAAAGGTAGAAGAACTAGCGTGCCTTTT-TTAGTGGATGTC-ATTTTACAGGGCTGGCTTCAGATGATTGTTATAGCTTTAAATAAAAGGACAGTTTT---CTTCTCGGCCGTTGGCCTACATTATTTCTTTACTGTCCATTGCCCTGGGCGCTTGACTAATAATTTAACAGCAGtttttttttttttttttaattttaaatCATGATTCATAGCATTGCTGTAAGAGTAATTAGAGGTAAAATAGGGCTTGAACTTGTCT-GTAGTTGGTTACTTACTGACATCTTAACATAAAAGTAAGGTGAGAGGGTGAAGTTTTAAGTAACGTAAAGTGGAATAGAAATTAAATGCCCTGAAActgccatgtccggttcggtaggcgc-------------tagctacctg----tagctgttgagcacttgaaatgctggctagtcctaattgaggtg--tgt-tgtgttaaatacactggattttgtcg-ttggagtaggaagaacagtgtaaaatatctgcttgataattttttatattgattacatacatgttaaaatga----------tactatttgggacatattg--agttaagtatatttaaaattaatttcaccttttt-------cttttaatggggc-tactagtatatttaacattacatacgtggctcacatatttattggacagcactgCTCTAGAAGTTTAAGAAGAAATAAGAAAAA-TATTGAGAACAGGTTGCGGTAGTAGG------------AACTTTGCCCTTCT---ATAAGACCGATTCCAATAA-AAATAATAGGTTATAGTTTTAATTGGACTTTTCCTACTAGAAAAAATAAGTGTACTTTACATGCCCCTTTGTTCTCCCTCTTTCCCCTCCAGTTTAGAGGTTAGCATGTATTTATTATAGCAGGATTAATACAGGGATTCACTAAGCGGTGTTAAGAAAACTTAGGTAAATGATTCCCTGATGACCACACTTGATTTTCAAAGCACTTTCCTAACCCATTTTTAACTGGTATAGAGTCAAAGGCAGATGGCTTATTAGTAGTCATCTCATTTAAATCTTACGGAATTTTTCCAGTAAATCTC-----AAATAATTTGTTGTAGGCTATTTGGGCTATTTGGTCAAGTGCATGGAAGGGACAGCATAGGACATGTGGTACTTCATTTCCAAATTGCTTGAGATGATTTTCATTATAACCATATATTATTTGGTTCTGGTTTTCTGGAAAAGCCAGCTAAACCTTTGGTGCTTTTAGATATAAATGAAATATCACCAAAGGATTGCTCAAAGTGACTTACGCAACTTGAATATATA-TTTTTTCCTTAGGGTGTTTATCCCAAATTATCTGGGCATTTGCTGC-AATTTGCAGTTTTTTTAAAAAAAACACCAAAATAGTTATTTTTCAAGTTAGAG i rheMac2.chr3 C 0 C 0 s panTro2.chr4_random 3165651 1495 + 6711082 CTTGCCTCCTCCC------CTCTCACTCCTATGCCAGCCCCTGCCATTCCCCACCCC-CTCTGTAGACTGCAAGACTCAACAAGTGACTTGCTAAGCAAACCCTGCTGAGAAGAGGTCTGTTTAGGGACACAAGAGGCCAAGTACACAAAAAAACAAAAGAACTAGCATGCCTTTT-TCAATGGATGTCTATTTTACAGGGCTGGCTTCAGATTATTGTTATAGCTTTAAATAAAAGGACCGTTTTTGTCATCTTGGCCCATGACCTACATTATTTCTTTACTGTCCATTGCCCTGGACGCTTGACTAATAATTTAACAGCAGttttttttttaa------attttaaatCATGATTCATTGCATTGCTGTAAGAGTAATTAGAGGTAAAGTAGGGCTTGAAACTGCCT-GTAGTTGGTTACTTACTGAGATCTTAGCATAATTGTCAGGTGAGAGGGTGAAGTTTTAATTAGCGCTAAGTGGGATAGAAATTCAATGCACTGAAActgcagtgtccaattcagtaggcgc-------------tagccacctg----taactgttgagcacttggaatcctggctcgtcctaattgagatg--tgt-tgtgttaaatgcactggattttgtca-ttggagtgggaagaacagcgtagaatatctgcttgat-tttttttatatttat----cacatgttaaaattattactatgattactatttgggacatactg--agttaagtatatttaaaattaatttcacc-tttt-------cttttaatggggcttaccagtacatttaaaattacatacgtggctcacatatttattggacagcacGGCTGTAGAAGTTTAGGAAGAAATAAGAAAAA-TATTGAGAATAGGTAGCGACAGTAGG------------AAGTTTGTCCTCCT---GTAAGACTGATTCCAATAA-AACTAATAGGTGATAGTTTTAATTGGCTTTTTCCTACTAGAAAAAGTAAGTGTACTTTACATGCCTCTTTGTTCTCCCTCTTTCCCCTTCAATTTAGTGGTTAGCATGTATTTACTACATCAGGCTTAAT------ATTCACTAAGCAGTGTTAAGAAGACTTAGGTAAATGATTCCCTGATGAACACACTTGATTTTCAAAGCACTTTCCTAACCCATTTTTAATAGGAATAGAGTCAAAGGTAGATGGCTTATTAGTAGTCATCTCATTTAAATCTCATGGAATTTTCCTGCTAAATCTCAAAGTAAACAATTTGTTATA---------GGCTGTTTTGTCAAGTGTATGGAAGGGACAGCATAAGACATGTGGTACTTCATTTCCAAATTGCTTGAGATGGTTTTCATTATAATCATACATTATTTGCTTCTGGTTTTCTGGAAAAGCCAGCTAAACCTGTGGTTCATTTAGATATAAATGAAATATCCTCAAAGGATTGCTCAAAGTGACTTATGCAACTTGAATATATA-TTTGTTCTGTAGGGTGTTTATTCCAAATTACCTGGCCATTTGCTGC-AATTTGCAGTTTTTT---AGAAAACACCAAA-----TATTTCTCAATTTAGAG i panTro2.chr4_random C 0 C 0 a score=162189.000000 s hg19.chr4_gl000194_random 37305 338 + 191469 ATGTTTTAATAAAAACAGTCATATTGTACTGGCAGCAGACAAATAAAATGGCCCTTTATTTCACAGTTGAGAATTTGAAATTGGAAGGTAATTAACATATGTAAGGATGATGTATTTGCTGCCTGGCTTATAGGAATGAGCCAAGTTGTTTTTTGAGGTATGTTGTTGCTGTGTATGTCCCACCTATTTTGCTTCCTTAATGAACAATGCAAGTTTGAGACAGAAATATTTGAGAACATTTTTATCAGTTGT--------GACATTTTGATAGTGAACATTTTATATCTTCTGTCAACTTAAAATGTTTGCATCTTC-----------------------------------------------------------------------------------------------------TGTCAGCTTAAAATGTTTAATTTGTTATA s rheMac2.chr3 119412814 305 + 196418989 ATGTTTTAATAAAAACAGTCATTTTGAGCTGGCAGCAGCCAAATA-----GCGCTTTATTTCACAGTTGAGAATTGGAAATTGGAAAGTAATTAACATATGTGAGGATGACTTACTTGCTTCCTGGCTTATAGGGATGAGCCAAGT--TTTTATTAGGGATGTTGTTGCTGTATATGTCCCACCTGATTTGCTTCCTTACTGAACAATGCAACTTTGAGACAGAAATATTTGAGAACATTTTTGTCACTTGG--------GACATTTTGATAGTGAACATTTTGTATCTTC-------------------------------------------------------------------------------------------------------------------------------TATTAACTTAAAATGTTTTATTTGTTATA i rheMac2.chr3 C 0 I 18 s ponAbe2.chrUn 5391226 445 + 72422247 ATGTTTTAATAAAAACAGTCATTTTGAGCTGGCAGCAGCCAAATAAAATAGCCCTTGATTTCACAGTTGAGAATTTGAAATTGGAAGGTAATTAACATA--TAAGGATGATGTATTTGCTTCCTGGCTTATAGGAATGAGCCAAGTTGTTTTTTGAGGGATGTTGTTGCTGTATATGTCCCACCTATTTTGCTTCCTTACTGAACAATGCAAGTTTGAAACAGAAATATTTGAGAACATTTTTATCAGTAGCGACATTTTGACATTTTGATAGTGAACATTTTATATCTTCTGTCAACTTAAAATGTTTGTATCTTCTGTCAACTTAAAATGTTTAATTTTGTTATAGCCAAATAATTTGGCTATAATGtttaatttatacaaacattaatataaatatttaaaCATTTTGTATCTTATGTCAACTTAAAATGTTTAATTTGTTATA i ponAbe2.chrUn N 0 C 0 s panTro2.chr4_random 3167146 338 + 6711082 ATGTTTTAATAAAAACAGTCATATTGAACTGGCAGCAGCCAAATAAAATAGCCCTTTATTTCACAGTTCAGAATTTGAAATTGGAAGGTAGTTAACATATGTAAGGATGATGTATTTGTGGCCTGGCTTATAGGAATGAGCCAAGTTGTTTTTTGAGGGATGTTGTTGCTGTGTATGTCCCACCTATTTTGCTTCCTTAATGAACAATGCAAGTTTGAGACAGAAATATTTGAGAACATTTTTATCAGTTGC--------AACATTTTGATAGTGAACATCTTATATCTTCTGTCAACTTAAAATGTTTGCATCTTC-----------------------------------------------------------------------------------------------------TGTCAGCTTAAAATGTTTAATTTGTTATA i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67753764 221 - 108569075 ATATTTTGGTAAAG----------------------------------------------TAACTGTCTTGAAT--------------------------------------TATTTGCTTTTTGGTTCACAGGGGTGAACCTAGTTGTTGTTCAGAGA----TGTTGCTCTCTATGTCCCACCTACTTTGCTTTCTTATTGGCCAAGGCAGCTTTGAGACAAAGACATTTGAGAACATTTTTGTCATTTTAG-------GACATTTTGATGGTGAACATTTTG-ATCTC--------------------------------------------------------------------------------------------------------------------------------TGTCAACTTAAATTTTTT--TTTGTTATA i equCab2.chr4 C 0 C 0 a score=7179.000000 s hg19.chr4_gl000194_random 37643 36 + 191469 GCCAAATAATTTGGCTATAATTGATAATTTAATTTA s ponAbe2.chrUn 5391671 36 + 72422247 GGCAAATAATTTGGCTGTAATTGATAATTTAATTTA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3167484 36 + 6711082 GCCAAATAATTTGGCTATAATTGATAATTTAATTTA i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67753985 18 - 108569075 ------AAACCAGGATAT--CTGATA---------- i equCab2.chr4 C 0 C 0 e rheMac2.chr3 119413119 18 + 196418989 I a score=369864.000000 s hg19.chr4_gl000194_random 37679 552 + 191469 TCAAATTAAATTGCTTT-TTTTCCCTTTAGACTTTCTTCAGTCACATCTGAATAAATCCCTTAGAAGTAAGCTAGATGTAATATAATGAAATGCTTAAAAGGGCTGTGTATCTTCA-------------------------------------------------TATTACACTTACAG--------------TGATTTTCTCTTGTG--CCCATTATATTCTACCTGCAGCTAGTTGAGGTAAAGAGAGGGCATTTAACTGTCAAGGGAACCTGTGAGGAGACTGTAGAAATCTGGAAAGTCTCTTGAGTCTTTGAGGGATTTTGGGATGC------AGAGAGTGGGGCTGGGATCTCTGGCTAGGTTGGAGCCAGCCTGCA---TTTGTATCTTTATCTTGGAAGCAAACTTAGAATGCAGAGATAGATGTGGCCTGGATGCTGCTAACTCTAGCCAACCACTAAATCTTAAGGTGGGAGAGATGCAGCC-TTTGGCTGGGTGCTAAGCTGCTGTAGCTGGTTGAATGTAGAGGTCA-CTATCTTTTCTGAATATTTGTAAGTAAATTAAATCATTCTTTACTCCTGTATGCCTGCCAACCAAATGGGAAATCGCTATAGAAAAGAT s panTro2.chr4_random 3167520 552 + 6711082 TCAAATTAAATTGCTTT-TTTTCCCTTTAGACTTTCTTCAGTCACATCTGAATAAATCACTTAGAAGTAAGCTAGATGTAATATAATGAAATGCTTAAAAGGGCTGTGTATCTTCA-------------------------------------------------TATTACACTTACAG--------------TGATTTTCTGTTGTA--TGCATTATATTCTACCTGCAGCTAGTTGAGGTAAAGAGAGGGCATTTAACTGTCAAGGGAACCTGAGAGGAGACTGTAGAAATCTGGAAAGTCTCTCGGGTCTTTGAGGAATTTTGGGATGC------AGAGAGTGGGGCTGGGATCTCTGGCTAGGTTGGAGCCAGCCTCCA---TTTGTGTCTTTATCTTGGAAGCAAACATAGAATGCAGAGATAGATGTGGCCTGGATGCTGCTAACTCTAGCCAACCACTAAATCTTAAGGTGGGAGAGATGCAGGC-TTTGGCTGGATGCTAAGCTGCTGTAGCTGGTTGAATGTAGAAGTCA-CTATCTTTTCTGAATACTTGTAAGTAAATTAAATCATTCTCTGCTCCTGTATGGCTGCCAACCAAATGGGAAATCGCTATAGAAAAGAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5391707 549 + 72422247 TCAAATTAAATTGCTTT-TTTTCCCTTTAGACTTTCTTCAGTCACATC------AATCACTTAGAAGTAAGCTAGATGTAATATAATGAAATGCTTAAAAGAGCTGTGTATCTTCA-------------------------------------------------TATTACACTTACAG--------------TGATTTTCTGTTGTA--CCCATTATGTTCTACCTGCAGCTAGTTGACGTAAAGAGAGGGCATTTAACTGTCAAGGGAACCTGAGAGGAGACTGTAGAAATCTGGAAAGTCTCTTGGATCTTTGAGGGATTTTGGGATGC------AGAGAGTGGGGCTGGGATCTCTGGCTAGGTTGGAGCCAGCCTGCATTTTTTGTATCTTTATCTTGGAAGCAAACTTAGAATGCAGAAATAGATGTGGCCTGGATGCTGCCAACTCTAGCCAACCACTAAATCTTAAGGTGGGAGAGATGCAGGC-TTTGGCTGGGTGCTAAGCTGCTATAGCTGGTTGAATGTAGAGGTCA-CTATCTTTTCTGAATACTTGTAAGTAAATTAAATCATTCTCTACTCTCGTATGCCTGCCAACCTAATGGGAAATCGCTATAGAAAAGAT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119413137 558 + 196418989 TCAAATTAAATTGTTTTCTTTTCCCTTTAGATTTTCTTCAATCACATCTGAATAAATCACTTAGAGGTAACCTAGATGTAATATGGTGAAATGCTTAAAAGAGCTGTGTATCTTAG-------------------------------------------------TATTACACTTACAGC---------AGTATGATTTTCTGTTGTA--TACATTATATTGTACCTGCAGCTAGTTCAGATAAAGAGAGGGCATTTAACTGTCAAGACAACCTGAGAGGAGACTCTAGTAATCTGGAAAGTCTCTTGGATCTTTGAGGGATTTTGGGATGG------AGAGAGTGGGGCTGGGATCTCTGGCTAGGCTGGAGCCAGCCTGGA---TTTGTATCTATATCTTGGAAGCAAACTTAGAATGCAGAGACAGATGTGGCCTAGATGCTGCCAGCTCTAGCCAACCACTAAATCCTAAGGTGGGAGAGATGCAGGC-TTTGACTAGGTGCTAAGCTGCTGTAGCCCATTGAATGTAGAGGTCA-CTATATTTTCTGAATACCTGTAAGTAAATTAAATCATCCTCTACTCCCGTGTGCCTGCCAACCTAATGGGGAATCGCTATAGAAAAGAT i rheMac2.chr3 I 18 C 0 s equCab2.chr4 67754003 604 - 108569075 TCAAATAATATTGCTTTCTTTTCTCTTTAGGATTTCTTTTATCACGTTGGAATAAATCACTTAGAGGTAAGCTAGATG-----TTGTGAAATGCTTATATGTGCTGTATATCTCGATTACACGTTAGCCGTGTAATCGATCTCTCAGGTCTATAGATCTATAATCTATCAGATCTATAATCGATCTATAGGTGTGATCATCTATTCTACTCCCGATATATTCTGTGCGCAGTTAGCACAGGTAAAGAGCGAGCATTTAATTGTCGAGGAGACCTGTGCGGAGACTGTAGTAATCTGGAGAGTCTCTTGGATTTTTGAGGGCTTTTGAGATTCTGGGATGGAGAGAGGGGCTGGGATCTCTGGCTAGGTTGGATCTCGCCTATG---TGTGTGTCTGTGTCCTGGGAGTAAACCTAGGATGCAGAACAGAATGGGGCCTGAACACCGC-AGTTCTGGCTGACC----AAACGTAAGGCGAGAGAGATGCAGACTTTTAACTGGGTGCTAAGCTGCTATAGCCGGCTGGCTGTAAAGGTCATCCGTCTTTTCTGAATACTTGTAAGTAAATTAAGTCGTTT------------AGCCTGCCAAGCTAATGGAAAACTACTGTAGATAGGAT i equCab2.chr4 C 0 C 0 a score=70232.000000 s hg19.chr4_gl000194_random 38231 87 + 191469 GGTTTAAATTTTAGTCTTTGAAGTGGTTTATGCACGTTTCTGGAATCAAGATTTAACACGGACTTGGATTGGATATTGAATATTTTT s equCab2.chr4 67754607 85 - 108569075 GGTTTATATTTCAGTCTTTGAAGTGGTTTATGCAAGTTTTTGGAGTCGAGATTTACTACAGACCTGGATTGCATATTGAGTA--TTT i equCab2.chr4 C 0 C 0 s rheMac2.chr3 119413695 87 + 196418989 GGTTTAAATTTTAGTCTTTGAAGTGGTTTATGCATGTTTCTGGAATCAAGATTTAATGCAGACTGGGATTGGATATTGAATATTTTT i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5392256 87 + 72422247 GGTTTAAATTTTAGTCTTTGAAGTGGTTTATGCACGTTTCTGGAATCAAGATTTAATGCAGACTTGGACTGGATATTGAATATTTTT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3168072 87 + 6711082 GGTTTAAATTTTAGTCTTTGAAGTGGTTTATGCACGTTTCTGGAATCAAGATTTAATGCCGACTTGGATTGGATATTGAATATTTTT i panTro2.chr4_random C 0 C 0 s danRer6.chr19 24197926 71 - 48708673 GGATTGCAGTTTGGCTTGT----TAGTTTGTGCCCatttt--aaaatatgattt--------tttaaatt--atatttattatattC i danRer6.chr19 N 0 I 11 a score=19578.000000 s hg19.chr4_gl000194_random 38318 39 + 191469 GATTTGTCTACTTTTCTC--TCCATAGGGAGCTTATAGCTT s equCab2.chr4 67754692 39 - 108569075 AATGGGGCTGCTTTTCTC--TCCATAGAGAGCCCGCGGCTC i equCab2.chr4 C 0 C 0 s rheMac2.chr3 119413782 39 + 196418989 GATTTATCTGCTTTTATC--TCCATAGAGAGCTTATAGCTT i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5392343 39 + 72422247 GATTTGTCTACTTTTCTC--TCCATAGGGAGCTTATAGCTT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3168159 39 + 6711082 GATTTGTCTACTTTTCTC--TCCATAGGGAGCTTATAGCTT i panTro2.chr4_random C 0 C 0 s oryLat2.chr11 18603221 29 + 29412213 GCTGTTTATATTCTTCTC--TCTGCAGGAGG---------- i oryLat2.chr11 N 0 C 0 s danRer6.chr19 24198008 30 - 48708673 ACCTTTGATGTTGTTATTAATCCGCAGCAT----------- i danRer6.chr19 I 11 C 0 s xenTro2.scaffold_400 333174 29 - 1106706 ----------CTTTTCTT--TACAGAATTTGTTTCTCAAAT i xenTro2.scaffold_400 N 0 C 0 a score=774862.000000 s hg19.chr4_gl000194_random 38357 265 + 191469 CATTGCACTGTGTGTGGCATTTGGGTCCTGTTTGACAGCAATGACTGCCTTTTTGTTTAGTGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAGATGCATCCTGTTTTGAGAATGTTAATGGATACACCAGCTGCTGCTTTGGATTTCACCCATTGGTGGTAGTGGACCCGCTGTTTGGAATGCAGACAATTTAAGTGAAGACATATCCATATATGTGGCTCTGTTACAATGGTGAAATCTACAACCATAAGAAGGTAGG-GG s panTro2.chr4_random 3168198 265 + 6711082 CATTGCACTGTGTGTGGCATTTGGGTCCTGTTTGACAGCAATGACTGCCTTTCTGTTTAGTGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAAATGCATCCTGTTTTGAGAATGTCAATGGATACACCAGTTGCTGCTTTGGATTTCACTGGTTGGTGGTAGTTGACCCACTGTTTGGAATGCAGCCAATTTAAGTGAAGACATATCCATATATGTGGCTCTGTTACAGTGGTGAAATCTGCAACCATAAGAAGGTAGG-GA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5392382 265 + 72422247 CATTGCACCATGTGTGGCATTTGGGTCCTGTTTGGCAGCAATGACTGCCTTTCTGTTTAGTGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAGATGCATTCTGTTTTGAGAATGTCAATGGATACACCAGCTGCTGCTTTGGATTTCACCGGTTGGTGGTAGTTGACCCGCTGTTTGGAATGCAGCCAATTTAAGTGAAGAAATATCCATATATGTGGCTCTGTTACAGTGGTGAAATCTACAACCATAAGAAGGTAAG-GA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119413821 265 + 196418989 CATTGTGCCATGTGTGGCATTTGGGCCCTGTTTGGCAGTGACGACTGCCTTTCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGAGGGCCAGATGCATTCCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGATTGGCAGTAGTTGATCCGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAACTATCCGTATTTGTGGCTCTGTTACAATGGTGAAATCTACAACTATAAGAAGGTAAG-GA i rheMac2.chr3 C 0 C 0 s equCab2.chr4 67754731 265 - 108569075 CATTGCACCATGTGTGGCATCTGGGCCCTCTTTGGCAGCGATGACTGCCTTGCTGTTCAGTGTCTGAGTGCTATGAAGATTGCACACAGGGGTCCAGATGCATTTCGTTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGATTTCACCGGTTGGCTGTGGTTGACCAGCTGTTTGGAATGCAGCCAATTCGAGTGAAGAAATATCCTTATTTGTGGCTCTGTTACAACGGTGAAATCTACAACCACGTGAAGGTAAA-CA i equCab2.chr4 C 0 C 0 s xenTro2.scaffold_400 333203 264 - 1106706 TATTTTAAAATGTGTGGCATCTGGGCCCTTTTTGGCAGCGATGAATGCCTTTCAGTGCAATGCCTTAGTGCCATGAAGATTGCCCACAGAGGCCCTGATGCTTTTAGATTTGAGAATGTGAATGGTTTCACCAACTGTTGCTTTGGCTTCCATCGCTTGGCTATTGTTGACCAACTTTATGGCATGCAGCCTCTTCGTGTAAAGAAGTTCCCTTACTTATGGCTTTGCTACAATGGAGAGATTTACAATTTCAAGCAGGTAAA-G- i xenTro2.scaffold_400 C 0 I 1069 s fr2.chrUn 281397414 251 + 400509343 CGCTCCGCTATGTGTGGTATCTGGGCCGTGTTTGGCAGCAACGGGTGCCTGTCGGGTCACCTCGTCAACGCCATGAAGGTGGCCCACCGAGGCCCCGACGCCTTCCGCATCGAGAACATCAACGGCTTCACCAACTGCTGCTTCGGCTTCCATCGCTTGGCCATCATGGACCAGCTGCACGGCATGCAGCCGCTGCGCATCATGCAGTTCCCCTACCTGTGGCTCTGCTACAACGGGGAGATCTACAACCA--------------- i fr2.chrUn N 0 I 78 s oryLat2.chr11 18603250 257 + 29412213 ------ACCATGTGTGGGATCTGGGCTTTGTTCGGCAGCGATGAGTGCCTGTCGGTCCAGTGCACGTGTGCCATGAAAATCGCCCACAGAGGCCCGGACGCATTCCGCTTCGAGAACGTCAACGGCTTCACCAACTGCTGCTTCGGCTTCCACCGGCTCGCCATCGTGGATCAGCTGTACGGGATGCAGCCGCTGCGCATCAAGAAGTTCCCGTACCTGTGGCTGTGCTACAATGGGGAGATCTACAACCACCACACGGTGAG--- i oryLat2.chr11 C 0 I 744 s gasAcu1.chrUn 48317737 253 - 62550211 ----------TGTGTGGAATCTGGGCTTTGTTTGGCAGTGATGAGTGTCTGTCGGTCCAGTGCACCAGCGCCATGAGGATCGCTCACAGGGGCCCCGACGCCTTCCGCTTCGAGAACGTCAATGGCTTCACCAACTGCTGTTTCGGCTTCCACCGGCTGGCCGTCGTGGACCAGCTGTACGGCATGCAGCCCCTGCGCATCAAGAAGTTCCCCTTCTTGTGGCTCTGCTACAACGGAGAGATTTATAACCACCACACGGTAGG--- i gasAcu1.chrUn N 0 I 1090 s tetNig2.chrUn_random 16155562 255 + 107808587 ----------TGTGTGGCATCTGGGCCGTGTTCGGCAGCGACCACTGCCTGTCGGGTCACCTCGCCAACGCCATGAAGGTGGCCCACAGAGGCCCCGACGCCTTCCGCATCGAGAGTGTCAACAGCTTCACCAACTGCTGCTTCGGCTTCCACCGGCTGGCCATCATAGACCGGCTGTACGGCATGCAGCCGCTGCGCATCATGCGGTTCCCCTTCCTGTGGCTCTGCTACAACGGGGAGATCTACAACCACGTCAGGGTGagg-g i tetNig2.chrUn_random N 0 I 49 s danRer6.chr19 24198038 258 - 48708673 -----CAGAATGTGTGGCATATGGGCCTTGTTTGGTAGTGATGAGTGCCTTTCAGTTCAGTGCACTAATGCCATGAAGATCTTTCATCGTGGACCGGATGCTTTCCGCTTCGAGAATGTCAACGGTTTCACTAACTGCTGCTTTGGGTTTCACCGTCTTGCGATTGTGGACCAGCTTTATGGCATGCAGCCTCTGCGAGTCAAAAAGTTCCCTTATCTGTGGTTATGTTACAACGGTGAAATCTACAACCACATCAAGGTTGG--- i danRer6.chr19 C 0 I 2395 a score=142690.000000 s hg19.chr4_gl000194_random 38622 236 + 191469 AAAAGAAGCCAGATG----TGTGGATGTGATTAAACTTCAGAGCTTGTTGGTTACGATGAGATTATATATTCTGTATCATGCTTTTTACTTTGCAAAGCA--TTCTATG----TTATCTCATTTGCTCTAAGTATGTAGAT--AGGGAACTGATGAATAAAATGGTGAGTGAAATCACTTGGTCAC------AAAAAAGTGATAAAAATGGGGATTACA---CAGTTTCTTTGACTCTTAGAA-TTTTTTCTCCTTCT s panTro2.chr4_random 3168463 237 + 6711082 AAAAGAAGCCAGATG----TCTGGATGTGATTAAACTTCAGAGCTTGTTGATTACGATGATATTATATATTCTGTATCATGCTTTTTACTTTGGAAAGCA--TTCTATG----TTATCTCATTTGCTCTAAGTATGTAGAT--AGGGAACTGATGAATAAAATGGTGAGTGAAATCACTTGGTCACA-----AAAAAAGTGATAAAAATGGGGATTACA---CAGTTTCTTTGATGCTTAGAA-TTTTTTCTCCTTCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5392647 209 + 72422247 AAAAGAAACCAGATG----TCTGGATGCGATTAAACTTCAGAGCTTGTTGGTTACGATGATATTATATATTCTGTATCATGCTTTTTACTTTGCAAAGCA--TTCTATG----TTATCTCATTTGCTCTAAGTATGTAGAT--AGGGAACTG----ATAAAGTGGTGAGTGAAATGACTTGGTCACA-----AAAAGAGTGATAAA---------------------------ACTCTCAGAA-TTTTTTCTCCTTCT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119414086 245 + 196418989 GAAAGAAACCAGATG----TCTGGATGCGATTAAACTTAAGAGTTTGTTGGTCACGATGATATTACATATTCTGTATCATGCTTTTTACTTTGCAAGGTA--CTCTATGTTCATTAACTCATTTGCTCTAAGTATGTAAAT--agggaactgatgaataaaaaggtgagtgaaatgacatggtcaca-----aaagaagtgataaaaatgagaattacagttcagtttctttgactcttagaatttttttctccttct i rheMac2.chr3 C 0 C 0 s equCab2.chr4 67754996 251 - 108569075 AAATGAAACCAGAAGATAATCTGGATCTGATTAAACCTCAGAGCTAGTTGGttataataattttatatattttGTGAAATGCTTTTTACTTTTCAAAATACTTTCCATGTTCATTATCTCATTTGCTCCAattatatagacagagggcactgatgcacaaagag----atgaaatgacttggtcacacacacacaaaagt-ataaa-atggggattacaattcaggttctttaactcttagaa-tcttttttttctct i equCab2.chr4 C 0 I 1071 e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=130773.000000 s hg19.chr4_gl000194_random 38858 288 + 191469 CCCCAGCtttttgttttgaaaaaaattctaacatacagaaaagaacagaatagtgagcacctagattgaataatcattaatgttttgccatatttgcttgatttttctttctacacacacacacatacacacacacatacacacacacacacagttttttgccaaatcatttgagagtatggtgcagattttgtgacactcctaaatatataagcatttatctcctaagaataaggacatttttctacataacatcaataccattattaaacctaagaatccataata s panTro2.chr4_random 3168700 276 + 6711082 CCCCAGCtttttgttttgaaaaaaattgtaacatacagaaaagaacagaatagtgagcacctagattgaataatcattaatgttttgccatatttgcttgatttttttttctac------------acacacacacacacaaacacacacacagttttttgccaaatcatttgagagtatggtgcagattttgtgacactcctaaatatataagcttttatctcctaagaataaggacatttttctacataacatcaataccattattaaacctaagaatccataata i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5392856 265 + 72422247 CCCCAGCtttttgttttgaaaaaaattctaacatacagaaaaaaacagaatagtgagcacctagattgaataatcat---tgttttgccatatttgcttgatttttctttctac--------------------acacacacacacacacacagttttttgccaaatcatttcagagtatggtgcagattttgtgacactcctaaatatataagcatttatctcctaagaataaggacatttttctacataacatcaataccattattaaacctaagaatccataata i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119414331 273 + 196418989 ccccagcttttcattttgaaaaaatttctaacatatagaaaagaacagaacagcgagcacctagattgaatagtcattaatgttttgccatatttgcttgagttttcttt-tgc------------acacacacacaaacacacacacacaca--tttttgctgaatcatttgagagtacagtacagatattatgacactcctaaatatataagcatttatcttctaagaataaggacattcttctacataacatcaatgccattattaaacctaagagtccataata i rheMac2.chr3 C 0 C 0 e equCab2.chr4 67755247 1071 - 108569075 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=20911.000000 s hg19.chr4_gl000194_random 39146 91 + 191469 tcacctggctgggtgcggtggctcacgcctgtaatcccagcaccttgggaggctgaggtgggtggatcacgaggtcaggaggttgaaacca s panTro2.chr4_random 3168976 91 + 6711082 tcacctggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtcaggaggtcgaagcca i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5393121 84 + 72422247 ccACCTggccgggtgcggtggctcacgcctgtaatcccagcattttgggaggccgaggcaggcagatcacgaggtcaggaggtc------- i ponAbe2.chrUn C 0 I 16 e equCab2.chr4 67755247 1071 - 108569075 I e rheMac2.chr3 119414604 0 + 196418989 C e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=31666.000000 s hg19.chr4_gl000194_random 39237 141 + 191469 tgctggctagcacggagaaaccccatctccactaaaaatacaaaaataaaaaaaatcagccaggcgtggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggtggagc s panTro2.chr4_random 3169067 140 + 6711082 tgctggctatcacggtgaaaccccgtctccactaaaaatacaaaaat-aaaaaaatcagccaggcatggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggtggagc i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5393221 132 + 72422247 cgctggctaacatggtgaaaccctgtctccaccaaaaatacaaaaat-----aaatcagccaggtgtggtggcgggtacctgtagtcccggttactt----ggctgaggcaggagaatggcgtgaacccgggaggtggagc i ponAbe2.chrUn I 16 I 1402 e equCab2.chr4 67755247 1071 - 108569075 I e rheMac2.chr3 119414604 0 + 196418989 C e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=20447.000000 s hg19.chr4_gl000194_random 39378 89 + 191469 ttgcagtgtgctaagcttcagccactgtactccagcctgggagacagagcaagactctgtctcaaaaatgaaaaaaaaaaatcataatg s ponAbe2.chrUn 5394755 89 + 72422247 ttgcagtgagccaagattgagccattgcattccagcctgggagacagagcaagactctgtttcacaaaaaaaaaaaaaaaaCCATAATA i ponAbe2.chrUn I 1402 C 0 s panTro2.chr4_random 3169207 89 + 6711082 ttgcagggagccaagattgagccactgtactccagcctggaagacagagcaagactctgtctcaaaaaagaaaaaaaaaaaccataatg i panTro2.chr4_random C 0 C 0 e equCab2.chr4 67755247 1071 - 108569075 I e rheMac2.chr3 119414604 0 + 196418989 C e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=137944.000000 s hg19.chr4_gl000194_random 39467 303 + 191469 ccacctaatatccagttaat----acttaaatttcgctaagtgtctggagaattttt-----------ttgttttttgagacagagtctcaactttgtcacccaggctggagtgcagtgttgcgatctcggctcactgcaacctctgcctcctgggttcaagcgattctccttcttcagcctcctgagtagctgggacgacaggcccacctgtcaccatgcctggttaattttttgtattttagtaaagac-tgg-------------gcccagggtggtctggaactcctgagctcagggaatctgctcaccttggcccctcaaagtgcta s panTro2.chr4_random 3169296 300 + 6711082 ccacctaatatccagtttat----acttaaatttccctaagtgtctgaataattttt--------------ttttttgaaacagagtctcaactttgtcacccaggatggagtgcagtgttgcgatctcggctcactgcaacctctgcctcccgggttcaagcgattctccttcttcagcctcctgagtagctggtactacaggcccacctgtcgccatgcctggctaattttttgtattttagtaaagac-tgg-------------gcccagggtggtctggaactcctaagctcaggcaatctgctcaccttggcccctcaaagtgcta i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5394844 315 + 72422247 CCACCTAATATCCAGTTTAT----ACTTAAATTTCCTTAAGTGTCTGGAGGAtttttttttttttttttttttttttgagacagagtttcaactttgtcacccaggctggagtgcagtgttgcgatctcggctcactgcaacctctgcctcccaggttcaagctattctccttcttcagcctcctgagtagctgggactacaggcccacttgtcaccatgcttggctaattttttgtattttagtaaagacgggg-------------gcccagggtggtctggaactcctgagctcaggcaatctgctcaccttggcctctcaaagtTATA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119414604 316 + 196418989 ccacctaatatccagtttattctaaatgaaatttccctaagtgtcccaagaattttt------------ttttttttgagacagagtctc-actctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccaggttcaagcaattctcctccctcagcctcccaagtagctgggactacaga--cacctgccaccatgcccagctaattttttgtattttagtaaagac-agggtttcaccatgttgcccagggtggtctggaactcctgagctcaggcaatctgcccaccttggccactcaaagtgttA i rheMac2.chr3 C 0 C 0 e equCab2.chr4 67755247 1071 - 108569075 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=171723.000000 s hg19.chr4_gl000194_random 39770 252 + 191469 ccaagaatatctttatagctggtatttgt--ttgtttagagccagatttcattcaagattcatgcatttggttgtgatgtttcttGGTATTTTTTCTGAGACTTCTTGATAGATA-CCTGTCAGGCACTGATAGAGAGTTATATCCTAACCATGTTTTGGACATTTTTATCTCTGAA-TAATAGCTTTTGTCATTGTTTGTTGCCTGCTCACGGGAACACTCTTAATAATAGTCTTCTTGTTCAAAAAGTTTTAAA s rheMac2.chr3 119414920 251 + 196418989 CCAAGAATATCTTTATAGCTGGTTTTTGT--TTGTTTTGAGCTAGATTTCATTCAAGGTTCATGCATTTGGTTGTGATGTTTCTTGGTGTTTTC--TGAGACTTCTTGATAGATACCCTGTCATGCATTGATAGAGATTTATATCCTAATCACATTTTGGACATTTTTATCTCTGAA-CAAAAGCTTTTGTCATTGTTTGTTGCCTGCTCATAGGAACACTCTTAATAACAGTCTTCTCGTTTAAAAAGTTTTAAA i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5395159 250 + 72422247 CCAAGAATATCTTTATAGCTGGTTTTTGT--TTGTTTTGAGCCAGATTTCATTCAAGGTTCATGCATTTGGTTGTGATGTTTCTTGGTATTTTTT-TGAGACTTCTTGATAGATA-CCTGTCATGCACTGATAGAGATTTATATCCTAACTGT--TTTGGACATTTTAATCTCTGAATTAATAGCTTTTGTCATTGTTTGTTGTCTGCTCATGGGAACACTCTTAATAATAGTCTTCTTGTTCAAAAAGTTTTGAA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3169596 251 + 6711082 ccaagaatatctttatagcTGGTATTTGT--TTGTTTAGAGACAGATTTCATTCAAAATTCATGCATCTGGTTGTGATGTTTCTTGGTATTTTTTCTGAGACTTCTTGATAGATA-CCTGTCATGCACTGATAGAGAGTTATATCCTAACCATG-TTTGGACATTTTTATCTCTGAA-TAATAGCTTTTGTCATTGTTTGTTGCCTGCTCACGGGAACACTCTTAATAATAGTCTTATTCTTCAAAAAGTTTTAAA i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67756318 251 - 108569075 ccaagactgtatttatagcTGTTTTTTGTTGTTGTTTTCAGCCAGATTTCATTCAGAGTTAATACGTTTGGTTGTGATGTCTCTCTGTATTTTTT-TGAGCCTAACTGATATATG-CCTATCATTCATGGGTAGGGTTTTATATTCTAGCCACCTTTTGGACATTTTTATCTCTGAA-CACTAGGTTTTGCCATTGTTTGTTGTCTGCTTATAGGAACATGTTCAATAATCGACTTCTCATTTAACAAGTTTTT-- i equCab2.chr4 I 1071 C 0 e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=32026.000000 s hg19.chr4_gl000194_random 40022 63 + 191469 ATAGTTATTCAAGAAATTCCTTTCACACATTTCTTTATTCCtttatt-aaggacctaatatgca s rheMac2.chr3 119415171 64 + 196418989 ATAGTTATTCAGGAGATTCCTTTTACACATTTCTTTATTCCtttattaaaggacctactatgca i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5395409 63 + 72422247 ATAGTTATTCAAGAAATTCCTTTCACACATTTCTTTATTCCtttatt-aagggcctaatatgca i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3169847 63 + 6711082 AGAGTTATTCAAGAAATTCCTTTCACACATTTCTTTATTCCtttatt-aagggcctaatatgca i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67756569 51 - 108569075 CTAGTTATACAGTAAattcctttcatacg------------tttatt-aagggcctactataca i equCab2.chr4 C 0 C 0 s sorAra1.scaffold_152064 2446 12 + 10062 GCAGTTGTTCAC---------------------------------------------------- i sorAra1.scaffold_152064 N 0 I 31 e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=29452.000000 s hg19.chr4_gl000194_random 40085 27 + 191469 ccagatatcatttttctaggtgattgt s rheMac2.chr3 119415235 27 + 196418989 ccagacatcatttttctaggtgattgg i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5395472 27 + 72422247 ccagacatcatttttctaggtgattgt i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3169910 27 + 6711082 ccagacatcatttttctaggtgattgt i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67756620 27 - 108569075 ccaggcatcatttttctaggtgcttgg i equCab2.chr4 C 0 C 0 s sorAra1.scaffold_152064 2489 27 + 10062 ATAAGCATCATTTTTCTAGGTTAGTGT i sorAra1.scaffold_152064 I 31 N 0 e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=465514.000000 s hg19.chr4_gl000194_random 40112 791 + 191469 agatgaaatggtgaaaaggaaaggcaagaatggaatttcctgctagtgggaag-t---agaagagagta-TTAAAACTTTTTTCTTTCTAAGTCAAATCAGTGTCATATGCATGAGAAAGCTAGGTAGTATGATGGCATTATCAGCTTGGCTTTCTCCTTAAATGAAATAGGAAGTGCTCTGTTTTACTCAGATAGTG-------------TTTTTTTTTCTAAAAAGCtaaaataagttaaatattttgaaattaattaatttCTGTTCTAAATTAGTCAA--AAGTT-ATATTTGTAAAACTAGAGAAGTTTGTTCCATTGCTTCTACCAAGCATCTCAGCTTATGTAGTTGGGGCAGCTAGAAA----TCTAATGAACAGAATGCATATTTTAGGCTTATATAAAGTATTCTGCAACATAAGGTCAAAAATACCCCC-------TACCCCCTTTTTGATAAAAATAAAGCTTACTACTAATAATAAAATACAGCCAGAGGTGTGCTGGGAGTGGAGGGGGACTGAGTTAAAGAAAGTAGGAATGGGGTAAAGGCTGGGACAAAGAGCAGACTCTCTCCCTGCAGGGGAGTATCAGGGGTCTGCAGCCAAGTTAAATGACAGCATGACTTCAGGA----GGCCAGATTTGAGGGCTTTTATCTAAGATGCAGC----ATCGGAGTTTGGTTT-AAGAGAGTAGGAAGTGATACAT-----CTGTTACCCAAAGGACACTTCTCTTTTTAGAATAAATTACCTGCAGAGTTTAGGCCAAAGA-------------GGTGGGCAAGG-TAGATTTGGGAAACTGTT-GCTTGCTAATATCACCAAACGC-------------------TTT s rheMac2.chr3 119415262 773 + 196418989 agatgaaatggtgaaaaggaaaggcaAGAATGTACTTTCCTGCTAGTGGGAGG-TGGAAGAAGAGAGTA-TTACAAC-TTTTTCTTTCTGAGTCAAATCAGTGTCACATACGTGAGAATGCTAGGTGGTGCTATGGCATTGTCAGCTTGGCTTTCCCCTTAAATGAAATAGGAAACGCCCTGCTTCACTTGAACAGTG---------TTGTTTCTTTTCATTAAAAAGTTACAAGAAGTTAAATATCTTGAAAATAATTAATTTCTATTCTGAATTAGCCAA--ATGTT-TCATTTGTAAAAGTAGAGAAGTTTGTTCCAT----------AAGCATCGAAGCTTATGTGGTTGGGGCAGCTAGCAAACTGTCTAATGAACAGAATGTGTATTTTAGGCTTATATAAAGTAT--------------TCAAAAATCCCCCCACACACACACCTCCTTTTTGGTAAAAATAAAGTTTACCACTA-CAATGAAATACAGTCAGAGGTGTGCTGGGAGTAGAGGGAGACTGAATGAAAAACAGGAGAAATGGGGTCAAGGCTAGAGCAAAGAGCAGGCCCTCTCCCTGCAGGGGAGTATCAGGGGCCTGCAGCCAAGTCAGATGACAGCATGAGTTCAGGA----GGTAAGATTTGAGGGCTTTTATCTAAGATGCAGC----ATTGGAGTTTGGTTTCAGGGGAGTAGGAAGCGATACAT-----CCATTACCCAAAGGACCCTTCTCCCTTTTAAATAAATTACCTGCAAAGTTTAGGCCAAAGA-------------GGTGGGCAAGG-TAGATTTTGGAAGCTGTT-GCTTGCTAATATCA------------------------------ i rheMac2.chr3 C 0 I 21 s ponAbe2.chrUn 5395499 821 + 72422247 agatgaaatggtgaaaaggaaaggcaagaatggaatttcctgctagtgggaagTT---AGAAGAGAGTA-TTAAAACTTTTTTCTTTCTAAGTCAAATCAGTGTCATATACATGAGAATGCTAGGCGGTATGATGGCATTATCAGCTTGGCTTTCTCCTTAAATGAAATAGGAAGTGCCCTGTTTTACTTGGACAGTGGTGTTTTTTTTTTTTTTTTTTGCTAAAACGTTACTAGAAGTTAAATATTTTGAAAATAATTAATTTCTGTTCTAAATTAGTCAA--ATGTTAATATTTGTAAAACTAGAGAAGTTTGTTCCATTGCTTCTACCAAGCATCTCAGCTTATGTAGTTGGGGCAGCTGGAAA----TCTAATGAACAGGATGTATATTTTAGGCTTATATAAAGTATTATGCAACATAAGCTCAAAAATACCCCC--------ACCACCTTTTTGATAAAAGTAAAGTTTACTACTAATAATAAAATACAGCCAGAGGTGTGCTGGGAGTGGAGGGGGACTGAGTG-AAGAAAGTAGGAATGGGGTAAAGGCTGGGGCAAAGAGCAGGCCCTCTCCCTGCAGGGGAGTATCAGGGGCCTGCAGCCAAGTTAAATGACAGCGTGACTTCAGGA----GGCCAGATTTGAGGGCTTTTATCTAAGATGCAGC----ATCGGAGTTTGGTTT-AAGAGAGTAGGAAGTGATACCT-----CTGTTACCCAAAGGAC-CTTCTCTTTTTTAAATAAATTACCTGCAGAGTTTAGGCCAAAGA-------------GGT-GGCAAGG-TAGATTTGGGAAACTGTT-GCTTGCTAATATCACCAAATGCtttttttttttttttttttttt i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3169937 793 + 6711082 agatgaaatggtgaaaaggaaagccaAGAATGGAATTTCCTGCTAGTGGGAAG-T---AGAAGAGAGTA-TTAAAACTTTTTTCTTTCTAAGTCAAATCAGTGTCATATACATGAGAAAGCTAGGCGGTATGATGGCATTATCAGCTTAGCTTTCTCCTTAAATGAAATAGAAAGTGCCCTGTTTTACTCAGACACTG-----------TTTTTTTTTTTCTAAAAAGCTAAAAGAAGTTAAATATTTTGAAAACAATTAATTTCTGTTCTAAATTATTCAA--ATGTT-ATATTTGTAAAACTAGAGAAGTTTGTTCCATTGCTTCTACCAAGCATCTCAGCTTATGTAGTTGGGGCAGCTAGAAA----TCTAATGAACAGAATGTATATTTTAGGCTTATATAAAGTATTCTGCAACATAAGCTCAAAAATGCCCCC-------TACCCCCTTTTTGATAAAAATAAAGTTTACTACTAGTAATAAAATACAGCCAGAGTTGTGCTGGGAGTGGAGGGGGACTGAGTGAAAGAAAGTAGGAATGGGGTAAAGGCTGGGGCAAAGAGCAGGCTCTCTCCCTGCAGGGGAATATCAGGGGACTGAAGCCAAGTTAAATGACAGCATGACTTCAGGA----GGCCAGATTTGAGGGCTTTTATCTAAGATGCAGC----ATCGGAGTTTGGTTT-AAGAGAGTAGGAAGTGATACAT-----CTGTTACCCAAAGGACCCTTCTCTTTTTTAAATAAATTACCTGCAGAGTTTAGGCCAAAGA-------------GGTGGGCAAGG-TAGATTTGGGAAACTGTT-GCTTGCTAATATCACCAAACGC-------------------TTT i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67756647 775 - 108569075 agatgcaatggtgaagaggaaaggtaagaatggagtttcatgctagtgggag--tggaggcagGGAGCAGTGAAAACTTCTTTCTTCCTAAGCTCAGTTAGGACCGTATAGGTGAGAATGTTAGGTTGCATTATGGCAATATTAGCCTGACTTTCACCTTAAATGAGATAGAAAATTCCTTGTTTTACTTGAACAGCA---------TTGCTGCTTTTGTGTATTGTGTTA--AAAAGTTAAAT----------------ATTTCTATTCTAAATTAGCCAAATATGTT-GTATTTTCAAAAGCAGAGAA----GTCCCATTGCTTCTACCAATCATCTAAGGTACTGTGGTTGGAGCAACTAGAAATTGGTCTAAAGAGCCGAATGGACATTTTAGCTTTCTATAGAGTATTCTGGAACATAAGCTCCAA-----------------GCCCTTCTTTTGATGAAAATAAAATTTACTACCACTGCTGAAATGCAG-CAGGGGTGTGTTGGGAGTGGAGGGGGGAC-AGTCAAGGAGAGGAGGAATCTGAGTAAAGCTGGAGCGCCAAGGAGGCCTGCTTCCTGCC-GGGAGCGTCAGGGGCCTGCAGCCGAGTCCAGTGGCACTGTGCTTGCTGGATGGTGGCAAGACCTGGGGGCATTTATCTAACA-GCAGCTTTTATTTATGTGTGGTTTCAGGAGAGTAAGAAGTGGTACATGGGAGTGATTAACC---------------------AATAAATTGCTTGCAAGGTTTAGGCCAGAGAGTGGCCCTGACACGGTGGGGGAGGATGAATTTGGGAAGCTGTTAACTTGCTAAAATCA-TTGATGC-------------------TTT i equCab2.chr4 C 0 I 3 e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=165513.000000 s hg19.chr4_gl000194_random 40903 636 + 191469 CTTTTTATACTTGGTGGAGGCTTTAATTGGGGCAAGGACATTTTTATACAAAGATAGAGAAAACAATCACCTATGGAATTTGATTCCTTGCTCCATGCCCTCGCTAGCACCTCTCAACATGCTTGATGATATTTAAAATTTCTTCCTAGGGAAAAAACTTTTCATCCCACAATTAGAATCAGGCTTAACTTGCTTTTTGAAAAGGTAGTAGGCAATTTGTGTTAAGATCTAAATTACCAAGATTTTTATATCTTGAAACAGATTTAGATGATAGAGTGAGGTCGGTGGTGGTGGTGGTTGGTGGGAAGGGGTAGTTTTTTAGAGAGGGTATTAAGAGTTGGGGTTTTCAATGTGAGAGAGGTGAAGGTTTGAAAATAAGTAAGAAAAGCACTAAAAGGGTGAAGTCAAGGGCCTCAGAGAGCCAGGATGATAGATTCTATTTCACAGTTTAACACAGGATCACCATAGACCAAAGCAAGTTTATAACTAAGGCAATGAAGATCATCTGTCTCCTCCCTTCCCCATTAATTGTGAACTTTAGTTTTATAAGCTCCTAAGAGGCAGAAAACAAATTGGAGACTCGTCATCTATTTGGGAGTGTATGGCATGTATTTATTGTCCTAGGTGCTGGGTTTA s ponAbe2.chrUn 5396320 633 + 72422247 ttttttttACTTGGCGGAGGCTTTAATTGGGGCAAGGACATTTTTATACAAAGATAGAGAAAACAATCGCCTTTGGAATTTGATTCCTTGCACCATGCCCTCGCTAGCACCGCTCCACATGCTTGATGATATTTAAAATTTCTTCACAGGGAAAAAGCTTTTCATCCCACAATTAGAATCAGGCTTAACTTGCTTTTTAAAGAGGTAGTATGTAATTTGTGTTAAGATATAAATTACCAAGATTTTTATATCTTGAAACAGATTTAGATGATAGAGTGAGGTA---GGTGGTGGTGGTTGGTGGGAAGGGGTAGTTTGTTAGAGAGGATATTAAGAGTTGGGATTTTCAATGTGAGAGAGGTGAAGGTTTGAAAATAAGTAAGAAAAGCACTAAAAGGATGAAGTCAAGGGCTTCTGAGAGCCAGGATGATAGATTCTATTTCACAGTTTAACACAGGATCACCATAGACCAAAGCAAGTTTATAACTAAGGCAATGAAGATCATCTGTCTCCTCCCTTCCCCATTAATTGTGAACTTTAGTTTCATAAGCTCCTAAGAGGCAGAAAACAAGTCGGAGACCCGTCATCTATTTGGGAGTATATGGCATGTATCTATTGTCCTAGGTGCTGGGTTTA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3170730 633 + 6711082 CTTTTTATACCTGGTGGAGGCTTTAATTGGGGCAAGGACATTTTTATATAAAGATAGAGAAAACAATCGCCTATGGAATTTGATTCCTTGCTCCATGCCCTCGCTAGCACCTCTCAAGATGCTTGATGATATTTAAAATTTCTTCATAGGGAAAAAACTTTTCATCCCACAATTAGAATCAGGCTTAACTTGCTTTTTGAAAAGGTAGTATGTAATTTGTGTTAAGATATAAATTACCAAGATTTTTATATCTTGAAACAGATTTAGATGATAGAGTGGGGTA---GGTGGTGGTGGTTGGTGGGAAGGGGTAGTTTTTTAGAGAGGGTATTAAGAGTTGGGATTTTCAATGTGAGAGAGGTGAAGGTTTGAAAATAAGTAAGAAAAGCACTAAAAGGGTGAATTCAAGGGCCTCTGAGAGCCAGGATGATAGATTCTATTTCACAGTTTAACACAGGATCAGCATAGACCAAAGCAAGTTTGTAACTAAGGCAATGAAGATCATCTGTCTCCTCCCTTCCCCATTAATTGTGAACTTTAGTTTTATAAGCTCCTAAGAGGCAGAAAACAAATTGGAGCCTCGTCTTCTATTTGGGAGTGTATGGCATGAATTTATTGTCCTAGGTGCTGGGTTTA i panTro2.chr4_random C 0 I 55823 e equCab2.chr4 67757422 3 - 108569075 I e rheMac2.chr3 119416035 21 + 196418989 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=10546.000000 s hg19.chr4_gl000194_random 41539 62 + 191469 TTTTTTTCAGCTAATGACAGTTTTCCATGCTTTATGGTAAGTGACCATAAAGTAAGTGGTAA s ponAbe2.chrUn 5396953 39 + 72422247 TTTTTTTCAGCTAATGACAGTTTTCCATGCTTTATGGTC----------------------- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3227186 62 + 6711082 TTTTTTTCAGCTAATGACAGTTTTCCATGCTTTATGGTAAGTGACCATAAAGTAAGTGGTAA i panTro2.chr4_random I 55823 C 0 e equCab2.chr4 67757422 3 - 108569075 I e rheMac2.chr3 119416035 21 + 196418989 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=568740.000000 s hg19.chr4_gl000194_random 41601 834 + 191469 GTGACTTACCCTTCAGGCAGTTCAGCCCAGGACAGTCAGCAGAAGACTGTTTCCAGACCCCACCTGCTAGTTACAGATCATCCCTGAT--------AGAGCAGAGAGGGGTGACCAGGTAGTGACTTTATAGTCACTGGAGG----CAAAGCCCATTTTTGGACAGTTCATTGAGGGCTTACAGATAAAAGGTTCACAAA-TTATGCAGTGAGCTGGATGGAGTGTGAAGCGTAT-TTATGGGTCGTGCACATACATA---ATAGGTTTACTTTTTGAGATTTCAAAACATGTTTTAAAC-------TTAACCTAGGATTCCCACCTGATT---------TAAACCTCTTATTTCTCTAATGTCAGCCAAAAATGTGAGTATG-ACATACAAAGAGAAATACATCAAGGACTTTTCATCCTCATAGTTTGC---CAGTGATGCTGGAGAGTGTCAGAATTGGTGAGTAGCCTAATCAAACTTTCTTGCTCTGCATGCAGTGGCAGACAGTCCCTTTGCTGTTCCTTTGGGGCATGCAGACTAATAAAGTGCCACCATCATTTTATCTCTCAGTG------AGCAGTAGTTTTAATGCTACTGCAGTGGTGGGAGCACTGGGCGTTGTCGTCCTCACCTGAGGACAAGCAGCTTTGTTTTGGATCATGTATCT--GTTATTGTGATGGAGCCATTTATTTTTCAGGGAATGACGCCAAATGATGTTTGTCCCTTTGCTTTACATTTTTATAGCTAGGTCTTTGAAGCTGAACTGGAGGAACTTCTTAGCCAATACTGTCTTCTTAAACCAAAAGTTGACAGTTGCAGAAGACACGTTTTTTAGTGTCACGGCAACCAAGCAACATATTACCTTAAATTAA s panTro2.chr4_random 3227248 834 + 6711082 GTGACTTACCCTTCAGGCAGTTCAGCCCAGGACAGTCAGCAGAAGACTGTTTCCAGACCCCACCTGCTAGTTACAGATCATCCCTGAT--------AGAGCAGAGAGGGGTGACCAGGTAGTGACTTTATAGTCACTGGAGG----CAAAGCCCATTTTTGGACAGTTCATTGAGGGCTTACAGACAAAAGGTTCACAAA-TTATGCAGTGAGCTGGATGGAGTGTGAAGGGTAT-TTATGGGTCATGCACATACATA---ATAGGTTTACTTTTTGAGATTTGAAAACATGTTTTAACC-------TTAACCTAGGATTCCCACCTGATT---------TAAACCTCTTATTTCTCTAATGTCAGCCAAAAATGTGAGTATG-ACATACAAAGAGAAATACATCAAGGACTTTTCATCCTCATAGTTTGC---CAATGATGGTGGAGAGTGTCAGAATTGGTGAGTAGCCTAATCAAACCTTCTTGCTCTGCATGCAGTGGCAGACAGTCCCTTTGCTGTTCCTTTGGGGCATGCAGACTAATAAAGTGCCATCATCATTTTATCTCTCAGCG------AGCAGTAGTTTTAATGCTACTGCAGTGGTGGGAGCACTGGGCGTTGTCGTCCTCACCTGAGGACAAGCAGCTTTGTTTTGGATCATGTATCT--GTTATTGTGATGGAGCCATTTATTTTTCAGGGAATGATGCCAAATGATGTTTGTCCCTTTGCTTTACATTTTTATAGCTAGGCCTTTGAAGCTGAACTGGAGGAACTTCTTAGCCAGTACTGTCTTCTCAAACCAAAAGTTGACAGTTGCAGAAGACACGTTTTTTAGTGTCATGGCAACCAAGCAACATATTACCTTAAattaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5396992 818 + 72422247 ---ACTTACCCTTCAGGCAGTTCAGCCCAGAACAGTCAGCAGAA---TGTTTCCAGACCCCACCTGCTAGTTACAGATCATCCCTGAT--------AGAGCAGAGAGGGGTGACCAGGTAGTGGCTTTATAGTCACTGGAGG----CAAAACCCATTTTTGGACAGTTCATTGAGGGCTTACAGACAAAAGGTTCACAAA-TTATGGAGTGAGCTGGATGGAGTGTGAAGCATAT-TTATGGGTCGTGCACATACATA---ATAGGTTTAGTTTTTGAGATTTGAAAACATGTTTTAAAC-------TTAACCTAGGATTTCCACCTGATT---------TAAACCTCTTCTTTCTGTAATGTCAGCCAAAAATGTGAGTATG-ACATACAAAGAGTAATACATCAAGGACTTTTCATCCTCATAGTTTGC---CAGTGATGGTGGAGAGTGTCAGAATTGGGGAGTAGCCTAATCAAACCTCCTTACTCTGCATGCAGTGGCAGACAGTCCCTTTGCTGTTCCTTTGGGGCATGCAGACTAATAAAGCGCCACCATCATTTTATCTCTCAGTG------AGGGGTAGTTTTAATGCTACTGCAGTGGTGGAAGCACTGGGCGTTGTCATCCACCCCTGAGGACAAGCAGCTTTGTTTTGGAATATGTATCT--GTTATTGTGATGGAGCC----AATTTTCAGGGAATGATGCCAAATGATGTTTGTCCCTTTGCTTTACATTTTTATAGCTAGGTCTTTGAAGCTGGACTGGAGGAACTTCTTAGCCGATACTGTCTTCTCAAACCAAAAGTTTACAGTTGCGGAAGATACG-TTTTTAGTGTCATGGCAACCAAGCAACCTATTACC-----TTAA i ponAbe2.chrUn C 0 C 0 s equCab2.chr4 67757425 861 - 108569075 GTCGTTTATCCTTCAGATACTTAAGCTCAGAAGAGTCAGCAGAAGACTGTTTCCAAACCCCACCTGCTAGTGACGGATGGTCTCCGATGGTGTCTCAGAGCAGGGAGGGGTGACCAGGAGGTGGCTTTGTAGTCACCAGAGGCGGCCAAAGCCCATTTTTGGACAGTTCTGTGGGGGCTTATAGACAAACG-TTCACAAATTTATAGAGTGAGCGAGATG----GTGAAGCATGTGTTATAGGTCATACATATACAAACATATAGATTTATTTTTTTAAATTTAGAAACATGTTTTAACTGTTTAAATTTATCCAGGATTTCCACCTGATTTTGTTTATGTGAACCTGTTTTATTTCCATTGTCAGGCAGCAATATGAGTAAGTACAGAGAAGGAGGAACACACCAAGGACTTTTCACCTCCCCAGTTTGTTGGTGGTGGTGGTGGAGAGCCGTGGAGTTCGGGCTTACCTTAATTACGCCCTCTCACTCTGCATGTGGTGGCAGCGACGGTCTCTGCTGCTCCTTTCAGGTGTGTGGAGTAGTAAAGCTCCACTGTCATTTTGTCTGCCAGTGAGAAGTAGAAGTAGCTTCAATGCCACTGCTGTGGAGGGA---CTGGATGTTGTAGTCCTCCCACAGGGACCAGCAGCTTTGCTTTGGACCATGTGTCTCCATCATTGTGATGGAATCATTTATTTGTCAGGGAATAGTGCCAAAT-ATGTTTGTCCTTTTGCTTTCTATTTTCATAGGTAGGCCTTTGAGGCTGGAATGGAAGAAC--CTGAGCCAGTACTGTATTCCCAGACCTAAATTTCACAGTTGTGGAGGACACA-CTTTTAGTGTCATGGCAACTGAGCAACCTATTTGCTTA------ i equCab2.chr4 I 3 C 0 s rheMac2.chr3 119416056 826 + 196418989 -------ACCCTTCAGGCAGTTCAGCCCAGAACAGTCAGCAGAAGACTGTTTCCAGACCCCACCTGCTAGTTACAGATCATCCCTGAT--------AGAGCAGAGAGGGGTGACCAGGTAGTGACTTTACAGTCACTGGAGG----CAAAGCCCATTTTTGGACAGTTCAGTGAGGGCTTATAGACAAAAGATTCACAAA-TGATGGAGTGAGCTGGATGGAGTGTGAAGCGTAT-TTATGGGTCATGCACATACATG---ATAGGTTTACTTTTTGAAATTTGAAAGCATGTTTTAAGC-------TT-ATCTAGGATTTCCACCTGATT---------TAAACCTCTTCTTTCTCTAATGTCAGCCAAAAACCTGAGTACA-AGGTTCAAAAAGGAATACATCCAGGACTTTTCATCCTCATAGTTTGC---CAGTGATGGTGGAGAGTGTCAGAATTGGGGAGTAGCCTAATCAAACCTTCCTATTCTGCGTGCAGTGGCAGACAGTCCCTTTGCTGTTCCTTTGGGGCATGCAGACTAATAAAGCGCCACCATCATTTTGTCTATAAGTA------AGGAGTAGCTTTAATGCTACTGCAGTGGTGGAAGCCCTGGGCATTGTCGTCCACCCCTGGGGACCAGCAACTTTGTTTTGGATCATGTATCT--GTTATTGTGAGGTAGCCATTTATTTTTCATGGAATGGTGCGAAATGATGTTTGTCCCTTTGCTTTACATTTTTCTAGCTAGGACTTTGAAGCTGAACTGGAGGAACTTCTTAGCCAATACTATCTTCTCAAACCAAAAATTTTTAGGTGCAGAAGACATGTTTTTTAGTGTCATGGCAACCAGGCAACCTGTTATCTTAACTTAC i rheMac2.chr3 I 21 C 0 e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=12020.000000 s hg19.chr4_gl000194_random 42435 22 + 191469 ATTTAcaggttgagcatcccta s panTro2.chr4_random 3228082 22 + 6711082 atttagaggttgagcatcccta i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5397810 22 + 72422247 CTTCAGaggttgagcatcccta i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119416882 22 + 196418989 ATTTAGaggttgagcatcccta i rheMac2.chr3 C 0 C 0 s dipOrd1.scaffold_8908 33914 21 - 48807 ATATAca-gtcagtcctcccta i dipOrd1.scaffold_8908 N 0 I 2543 e equCab2.chr4 67758286 0 - 108569075 C e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=571561.000000 s hg19.chr4_gl000194_random 42457 1193 + 191469 atctgaaaatctgaaatttgaaatgcttcaaaatctgaaactttttgagcactgacatgacaccacatgtggattttgatgtcctagtcaaagtgcaggtgaacaacacacagtttatttgatgttctctaatgaaaaaagaccctctcagcccccttcagctgcagtataacttttctacacatgctcagatttccccatgcaagcacacacacaaagggtcacagaatggcacatgtgcaagctggacaagccaatgg-------caggatccccacagatgggacctaagtgcatgactcgttgtgtattttt-cttattctctgctctgtggtgttagcatactgaaaatgtcaataaggcctgtagat-atccctgcgagcagcaatgataaggaaaagtagaaacacttagaacacagaaagtcaagctgttggagaaattggactgtagtgtaaAGGtatagatgacatggtgaaaatgtgtgatagagatattgaagatattgaaggactagagctacctgcattcataacagaacaagaggtcatgtcagtttataaaattaaagagagacttccaagacaaaagcccttgataatgaggcagatgactctggagaaaca-ttataaaaaaccatctggcagaatgcctcctcagcctcagaggactcacctcctagttgctcaactc---ctgatatttcttctcacctaaaaaaagaaaaaaa---atacaatgtacagtaaccttttaatcaaaacgcagccttgtaggtggagcctgaaagcttgccattgtttatacagctgtttaacagctgatgcaggtattctggtgatgctactgtgttgcttattatttt-ttactgtattaatggcatgtcata-tttttacttatgtgtgaataattgtgtgaaaatgattgctcatcagtagcatataaattcagagtcagaaatgatggtcagtgatgtcagacagccacagattttccacatggaagctgagatagtgacacctttgctttctgatggttccatgtacacaaactttgtttcattcacaaaattatttgaaatattatataaaattacctgtaggctatgtgtataagatatatgaaacataagtgaatttcacatttagacttgggtctcatcgccaagatatctcacgtagatgcaaatatt-ataaaatcc-aaaa s panTro2.chr4_random 3228104 1193 + 6711082 atctgaaaatctgaaatttgaaatgcttcaaaatctgaaactttttgagcactgacatgacaccacatgtggattttgatgtcccagtcaaagtgcaggtgaacaacacacagtttatttgatgttctctagtgaaaaaagaccctctcagcccccttcagctgcagtataacttttctacacatgctcagatttccccatgcaagcacacacacaaagggtcacagaatggcacatgtgcaagctggacacgccaatgg-------caggatccccacagatgggacctaagtgcattactcattgtgtatttttgcttattctctgctctgtggtgttaacatactgaaaatgtcaataaggcctgtagat-atccctgcgagcagcaatgataaggaaaagtagaaacacttagaacacagaaagtcaagctgttggagaaattggactgtagtgtaaAGGtatagatgacatggtg-aaatgtgtgatagagatattgaagatattgaaggactagagctacctgcattcataacagaacaagaggtcatgtcagtttataaaattaaagagagacttccaagacaaaagcccttgataatgaggcagatgactctggagaaaca-ttataaaaagccatctggcagaatgcctcctcagcctcagaggactcacctcctagttgctcaactc---ctgatatttcttctcacctaaaaaaagaaaaaaa---atacaatgtacagtaaccttttaatcaaaaagcagccttgtaggaggagcctgaaagcttgccattgtttatacagctgtttaacagctgatgcaggtattctggtgatgctactgtgttgcttattatttt-ttactgtattaatggcatgtcata-tttttacttatgtgtgaataattgtgtgaaaatgattgcttatcagtagcatataaattcagagtcagaaatgatggtcagtgacgtcagacagccacagattttccacatggaagctgagatagtgatacctttgctttctgatggttccatgtacacaaactttgtttcattcacaaaattatttgaaatattatataaaattacctttaggctatgtgtataagatatatgaaacataagtgaatttcacgtttagacttgggtttcatccccaagatatctcacgtagatgcaaatatt-ataaaatcc-aaaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5397832 1191 + 72422247 atctgaaaatctgaaatttgaaatgctccaaaacctgaaactttttgagcactgacatgacactacatgtggattttgatgtcccagtcaaaatgcaggtgtacaacacacagtttatttgacgttctctagtgaaaaaagaccctttcagcccccttcagctgcagtataacttttctacacgtgctcagatttccccatgcaagcacgcccacaaaaggtcacagaatggcacacgtgcaagctggacacgcccatgg-------caggatccccacagatgggacctaagtgcattacccgttgtgtatttttgcttattctctgctctgtggtgttaacatactgaaaatgtcaataaggcctgtagataatccctacaagcagcaatgataaggcaaagtagaaacacttgtaacacagaaagtcaagctgttggagaaattggactgtagtgtaaAGGtatggatgacatggtgaaaatgtgtgatagagatattgaagatactgaaggactagagctacctgcattcataagagaacaagaggtcatgtcagtttataaaatt----agagacttccaagacaaaagccattgataatgaggcagatgactctggagaaaca-ttataaaaagtcatctggcagaatgcctcctcagcctcagagggctcacctcctagttgctcaactc-ttctgatagttcttctcacctaaaaaaagaaaaaaa---atacaatgtacagtgaccttttaatcaaaacacatctttgtaggtggagcctgaaaacttgccattgtttgtacagctgtttaacagctgatgcaggtattctggtgatgctactgtgttgcttattatttt-taactgtattaatggtatgtcatattttttacttatgtgtgaataagtgtgtgaaaatgattgctcatcagtagcatataaatccagagtcagaaatgatggtcagtgatgt----cagccacagattttccacatggtagctgagatagtgacacctttgctttctgatggttccgtgtacacaaactttgtttcatgcacaaaattatttgaaattttatataaaattagctttaggctatgtgtataagatatgtgaaacatgagtgaatttcacgtttagacttgggtctcatccccaagatatctcacgtagatgcaaatatt-ctaaaatccaaaaa i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119416904 1195 + 196418989 atctgaaaatctgaaatttgaaatgctccaaaatctgaaactttttgagcactgacatgatactac-tgtgcattttgatgtcacagtcaaaatgcaggtgtaaaacacacagtttatttggcatgccctaggaaaaaaagaccctctcagcccccttcagctgcagtataacttttctacacatgcccagatttcctcgtgcaagcatgcccacaaaggataatagaatggcacatgtgcaagctggacacgccaatggcaggatccaggatccccacagatgggacctctgcgcattacccattgtgtatttttgcttattttctgctctgtggtgttaagatactgaaaatgtcaaaaagacctgtagat-atttctttgagcagcaatgataaggaaaagtagaaacat----aacacagaaagtcaagctataggagaaattggactgtagtgtaaAGGTTtagattacatgatgaaaatgtgtgatagagatat---------tgaaaggctagagctacctgcattcataacagaacgagaggtcatgccagtctataaaatcaaagagagacttccaagacagaagccgttgttaatgaggcagatgactctggagaaacacttaacaaaagtcatttggccaagtgcctcctcaacctcagaggacccgcttcctagttgctcagctgcttccgatatttcttctcacctaaaaaaggaaaaaaaaagatacagtgtacagtaaccttttaatcaaaacacagcattgtcggtggagtctgaaagcctgccattgtttgtacagctgtttaactgctgatacaggtattctggtgatactactatgctacttattattttcttactgtattaatggtaggtcatattttttacttacgtatgaataagtgtataaaaatgattgttctttagtagcatataaattc--agtcaggaatgatgggcaatgatggcaaacagccacagattttccacatggtagctgagatagtgatacctttgctttctgatggttccatgtacacaaactttgtttcatgcacagaagtatttgaaatattatctaaaattacctgtaggctatgtgtataagatatatgaaacataaatgaatttcatgtttagacttgagtctcatccccaagatatctcacatatatgcaaatattcacaaaatcc-aaaa i rheMac2.chr3 C 0 I 508 e equCab2.chr4 67758286 0 - 108569075 C e dipOrd1.scaffold_8908 33935 2543 - 48807 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=13602.000000 s hg19.chr4_gl000194_random 43650 53 + 191469 aaaaattccgaaaccctaaacacttctggttccaaacatttcagataagggat s panTro2.chr4_random 3229297 53 + 6711082 aaaaaatccgaaaccctaaacacttctggttccaaacatttcagataagggat i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5399023 53 + 72422247 aaaaattccaaaacccaaaacacttctggttccaaacatttcagataagagat i ponAbe2.chrUn C 0 C 0 e equCab2.chr4 67758286 0 - 108569075 C e rheMac2.chr3 119418099 508 + 196418989 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=98303.000000 s hg19.chr4_gl000194_random 43703 242 + 191469 actcaatctgCATATATA-AAATATTTATGTATCACATACATAGTATGTATAAAATATGAATTTCCATTCCTCTACAGGTTAC-TATTCTGGTACATTCCCGTTATATTCTGTTTATCAGACTGCAACTAAAACTTTCATGGGTTCAGCTTTATGTTGAACAGAATTTGCAGAATTATGAGTTGAAGCAAACCCTAGGTTGATAATGCTATGATTCTCCTAAATCACCAAAGTGCATGAAATGA s equCab2.chr4 67758286 238 - 108569075 ACTTAACATATATTTGT--AAATATATATGTATTATGTACACAGTATGTATATGATGTGCATTTCCCTCCCTCCACACATTACGTGTTCTAGTACATTGCCGCTACA----GTTTATCAGAATGCAACTAAAATTTTCACAGGTTTAGCTTTATGTTATAAAGAACTTGTAGAATTGTGAGTTCAAACAAGCTATATTCTGATAATGCCATGGTTCTTCTAAATCATTAAAGTACATGAAATGG i equCab2.chr4 C 0 C 0 s panTro2.chr4_random 3229350 241 + 6711082 actcaatctgCATATATA-AAATATTTATGTATCACATACATAGTATGTAGATAATATGAATTTCCATT-CTCTACAGGTTAC-TATTCTGGTACATTCCCATTATATTCTGTTTATCAGACTGCAACTAAAACTTTCATGGGTTCAGCTTTATGTTGAACAGAATTTGCAGAATTATGAGTTGAAGCAAACCCTAGTTTGATAATGCTATGATTCTCCTAAATAACCAAAGTGCATGAAATGA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5399076 243 + 72422247 attcaatttgCCTATATATAAATATTTGTGTATCACATACATGGTACGTATATAATATGCATTTCCATTGCTCTACAGGTTGC-TATTCTGGTACATTCCCATTATATTCTGTTTATCAGACTGCAACTAAAACTTTCATGGATTCAGCTTTATGTTGAACAGAATTTGCAGAATTATGAGTTGAAGCAAACCCTAGTTTGATAATGCTATGATTCTTCTAAATCACGAAAGTGCATGAAATGA i ponAbe2.chrUn C 0 C 0 e rheMac2.chr3 119418099 508 + 196418989 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I e danRer6.chr19 24198296 2395 - 48708673 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=18683.000000 s hg19.chr4_gl000194_random 43945 39 + 191469 TTTTAAAGCT--CCAGAAATACTGAAGCAACTTTGTGATAA s ponAbe2.chrUn 5399319 39 + 72422247 TTTTAGAGCT--CCAGAAATACTGAAGCAACTTTGCAATAA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3229591 39 + 6711082 TTTTAAAGCT--CCAGAAATACTGAAGCAACTTTGCGATAA i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67758524 38 - 108569075 TTATAGAGC---CCAGAAACATTGAAGCAACTTTGCAATAA i equCab2.chr4 C 0 C 0 s danRer6.chr19 24200691 41 - 48708673 TTTTAAATATGACCATAACTTCTAAAAAATGTTTCTTATAT i danRer6.chr19 I 2395 C 0 e rheMac2.chr3 119418099 508 + 196418989 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I e oryLat2.chr11 18603507 744 + 29412213 I e xenTro2.scaffold_400 333467 1069 - 1106706 I e tetNig2.chrUn_random 16155817 49 + 107808587 I e fr2.chrUn 281397665 78 + 400509343 I e gasAcu1.chrUn 48317990 1090 - 62550211 I a score=-33694.000000 s hg19.chr4_gl000194_random 43984 61 + 191469 AA-ATTATTAG--TGGATGCACAAGGAGTCTATAATGTCTTGGTTTTGC---TATTGC------TTAC-T----------AAGG s equCab2.chr4 67758562 61 - 108569075 AAAATTATTAG--TGAATGCACAAGGATTC--TAACATCTTTATTTTGC---TATTGC------TTCCTT----------AAGT i equCab2.chr4 C 0 C 0 s rheMac2.chr3 119418607 59 + 196418989 -AAATTATTAG--TGAATGTACAAGGAATC--TAACATTTTGGTTTTGC---TATTGC------TTCA-T----------AAGA i rheMac2.chr3 I 508 C 0 s ponAbe2.chrUn 5399358 62 + 72422247 AAAATTATTAG--TGAATGCACAAGGAGTCTATAACGTTTTGGTTTTGC---TATTGC------TTCC-T----------AAGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3229630 62 + 6711082 AAGATTATTAG--TGGATGCACAAGGAGTCTATAATGTTTTGGTTTTGC---TATTGC------TTCC-T----------AAGG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_400 334536 54 - 1106706 -----------------TGCACA---AATATATACATTTGTATTTTTGT---TACTGT------TCTG-TTTTGTTGTTATAGT i xenTro2.scaffold_400 I 1069 C 0 s danRer6.chr19 24200732 61 - 48708673 GAGTCTGATAGCTTTTATTTCCAGTAATT---------GTGTACTGTGC---CATCTGTTCATCTTCT-T----------CCAT i danRer6.chr19 C 0 I 5 s fr2.chrUn 281397743 34 + 400509343 ---------------------------------AATTCTTTAACTCTGCCTGTGCTCG------TTGT-T----------CCAG i fr2.chrUn I 78 I 1 s tetNig2.chrUn_random 16155866 17 + 107808587 -----------------------------------------------GC---TGTTGG------TTCT-T----------CCAG i tetNig2.chrUn_random I 49 I 1 s gasAcu1.chrUn 48319080 33 - 62550211 -----------------------------CTCT-----AATAACCC-GC---CGGTGGG--ATTTCCT-T----------TCAG i gasAcu1.chrUn I 1090 I 1 e dipOrd1.scaffold_8908 33935 2543 - 48807 I e oryLat2.chr11 18603507 744 + 29412213 I a score=640279.000000 s hg19.chr4_gl000194_random 44045 244 + 191469 TGCAGCACCAGTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTACGTTGGTTGGTGTGTTTGCATTTGTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACATAAGGAGTCAGACCTTTGTTTAAAGCAGTGACAGAAGATGGATTTTTGGCTGTGCGTTCAGAAGCTAAAGGTAAT--AG s equCab2.chr4 67758623 244 - 108569075 TGCAACACCATTTTGAATTTGAGTACCAGACCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAGTTTGTATGTTGGACGGGGTGTTTGCATTTATTTTACTGGATACCGCCAATAAGAAAGTGTTCCTGGGCAGAGATACCTATGGAGTCAGACCTTTGTTTAAAGCCATGACAGAAGATGGGTTTTTGGCAGTGTGTTCAGAAGCTAAAGGTAAT--GA i equCab2.chr4 C 0 C 0 s rheMac2.chr3 119418666 244 + 196418989 TGCAACGCCATTTTGAATTTGAATACCAGACCAACGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATACTGCCAATAAGAAAGTGTTCCTGGGCAGAGATACATATGGAGTCAGACCTTTGTTTAAAGCAATAACAGAAGATGGATTTTTGGCTGTATGTTCAGAAGCTAAAGGTAAT--AA i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5399420 244 + 72422247 TGCAACACTATTTTGAATTTGAATACCAGATCAAAGTGGATGGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTAAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTTCTGGATTCTGTCAATAAGAAAGTGTTCCTGGGCAGAGATACATAAGGAGTCAGACCTTTGTTTAAAGCAGTGACAGAAGATGGATTTTTGGCTGTATGTTCAAAAGCTAAAGGTAAT--AG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3229692 244 + 6711082 TGCAGCACCAGTTTGAATTTGAATACCAGACCAAAGTGGATTGTGAGATAATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTATGTTGGATGGTGTGTTTGCATTTGTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACATAAGGAGTCAGACCTTTGTTTAAAGCAGTGACAGAAGATGGATTTTTGGCTGTGCGTTCAGAAGCTAAAGGTAAT--AG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_400 334590 246 - 1106706 TGGAAAAAAATTTTGGATTTGAATATCAAACACTGGTGGATGGGGAAGTAATCCTTCACCTCTATAGTGAACATGGAATTGAAAAAACTGCTGCCTTATTGGATGGTGTATTTGCATTTATTCTCTTGGATACAGCAAACAGAAAAGTCTATTTGGGAAGGGACTCTTATGGTGTCAGGCCACTCTTCAGACTTTTGACTGATGATGGCTTTTTGGCAGTTTGCTCTGAAGCCAAAGGTAATGAAA i xenTro2.scaffold_400 C 0 C 0 s fr2.chrUn 281397778 244 + 400509343 TGAGGAAGCAGTTTGGGTTTGACCACCAGACCGAGATGGACGGAGAGATCCTGCTCCATCTGTACGATCGCTTCGGCGCCAAGAAGATGGCGTCCCTCCTGGACGGCGTCTTTGCCTTTATTCTGCTGGACACCGCCAACAAGAGGGTCTGTGTGGGCAGGGACACCTTCGGAGTGCGGCCTTTGTTCAGATGCCTGACGGACGACGGGTTCCTTGGCGTCTGCTCCGAGGCCAAAGGTAGC--AG i fr2.chrUn I 1 N 0 s tetNig2.chrUn_random 16155884 240 + 107808587 TGAGGGAGCAGTTTGGCTTCGAGAACCAGACGGAGGTGGACGGAGAGATCCTGCTGCACCTCTACGACCGCTTCGGCCCCCAGAAGATGGCGTCCCTCCTGGACGGCGTCTTCGCCTTCATCCTGCTGGACACGGCCAACAGGAAGGTCTGCGTGGGCAGGGACACCTTCGGAGTGCGGCCCTTGTTTAAAGTCCTCACCAATGACGGGTTCCTTGGCGTCTGCTCAGAGGCCAAAGGTA------ i tetNig2.chrUn_random I 1 N 0 s gasAcu1.chrUn 48319114 244 - 62550211 TCAGGAAGCAGTTTGACTTTGATCACCAGACAAAAGTGGATGGCGAGATCTTGCTCCATCTGTACGACCGCTTCGGCATCCAGAAGATGGCCTCCCTCCTGGATGGCGTCTTTGCTTTTGTCTTGCTGGACACCGCCAACAGAAAAGTCTTTCTGGGGCGAGACACGTACGGCGTCCGGCCTTTGTTTAAATTCATCACGGACGACGGATTTCTTGCAGTGTGCTCCGAAGCCAAAGGTAAC--AG i gasAcu1.chrUn I 1 N 0 s oryLat2.chr11 18604251 239 + 29412213 TCCAGAAGACTTTTGACTTTGACTTCCAAACCAAAGTGGACGGTGAGGTACTGCTCCATCTCTATGACCgttttggcattaaaaaaatggcCTCCCTCCTGGACGGCGTCTTCGCCTTCATCCTGCTGGACACGGCCAACAGAAAGGTGCACCTGGGGAGGGATACCTACGGCGTGCGGCCCTTGTTCAAGCTCCTGACCGACGATGGCTTCCTGGCTGTCTGCTCTGAAGCAAAAGGT------- i oryLat2.chr11 I 744 N 0 s danRer6.chr19 24200798 244 - 48708673 TGAAGAATCACTTTGAGTTTGACTATCAAACCAAAGTAGATGGTGAGATCCTTCTGCATCTGTACGATCGCTTTGGAATCGAGAAGATGTGCTCCCTGCTGGATGGTGTGTTCGCCTTCATCTTATTAGACACAGCTAACAGAAAGGTTCACTTGGGAAGAGATACATACGGCGTGAGACCGCTATTCAGAATGCTGACTGACGATGGTTTTCTAGCTGTCTGTTCTGAAGGCAAAGGTAGA--AT i danRer6.chr19 I 5 I 8 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=42413.000000 s hg19.chr4_gl000194_random 44289 71 + 191469 TAAA--TTTACGTATAGATTTTCATTATTGTCTTGGTCGTGTG-TTTTCTTTTAAA---TTATATCTGAAAATCTCT s equCab2.chr4 67758867 73 - 108569075 TAGAATTTTTTCTATAGGTTTTCATTATTCTCTTGATTTTGTG-TTTTCTTCTAGG---TCATATTTGCAAATCCCA i equCab2.chr4 C 0 C 0 s rheMac2.chr3 119418910 71 + 196418989 TAAA--TTTTTCTATAGACGTTCATTATTGTCTTGGTTGTATG-TTTGCTTTTAAA---TTATATTTGAAAATCTCT i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5399664 71 + 72422247 TAAA--TTTATCTATAGATTGTCTTTATTGTCTTGGTCGTGTG-TTTTCTTTTAAA---TTCTATTTGAAAATCTCT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3229936 71 + 6711082 TAAA--TTTATGTATAGATTTTCATTATTGTCTTGGTCGTGTG-TTTTCTTTTAAA---TTATATCTGAAAATCTCT i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_400 334836 64 - 1106706 TAAA--TTTCT------ATTGTTAATCCACCCCAAAATATATA-CTTT-TTTTCAT---TTTTACTTTCTAATCTAC i xenTro2.scaffold_400 C 0 C 0 s danRer6.chr19 24201050 74 - 48708673 TGTT--TTTACTCACTCATTTGTGCTGTTA-AGTGATTGTATGAATCTCATTCAAACTTTTGTACCTGAACAGGTCT i danRer6.chr19 I 8 N 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=49182.000000 s hg19.chr4_gl000194_random 44360 89 + 191469 T----AGCAATCCAGAATTTTACAAGTGACT-AATTAAGTTGTGAGTTC-------TTACCTTTTTT------AAAAAAACAGAGTAGTTTT---ACTCTCCTTTTCAGC s equCab2.chr4 67758940 96 - 108569075 TAGGGGGCAATCCAAAATTTTACAATTGACTAAAGTAAGTCATGGACCCTCTGAGGTTTTTTTTTTT-----------AACCAAGGAGTTGG---ACCCTCCTTTTCAGC i equCab2.chr4 C 0 C 0 s rheMac2.chr3 119418981 99 + 196418989 TAGAGAGCAATCCAGAATTTTACAAGTGACT-AATTAAGTTATGAGTCT-------TTAACCTTTTTTTTTAAAAAAAAACAGAGGAGTTGT---ACTCTCCTTTTCAGC i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5399735 89 + 72422247 T----AGCAATCCAGAATTTTACAAGTGACT-AATTAAGTCATGAGTTC-------TTACCTTTTTT------AAAAAAACAGAGGAGTTGT---ACTCTCCTTTTCAGC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3230007 89 + 6711082 T----AGCAATCCAGAATTTTACAAGTGACT-AATTAAGTTGTGAGTTC-------TTACCTTTTTA------AAAAAAACAGAGTAGTTTT---ACTCTCCTTTTCAGC i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_400 334900 82 - 1106706 A----AGCAGAGACATATATTAC-----ATT-AAAAACATTTTAATTCC-------ATATAATTGAT-----------ATCTGGATGTTTTTTTAACCTTCCTTCTCTGC i xenTro2.scaffold_400 C 0 N 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=69166.000000 s hg19.chr4_gl000194_random 44449 101 + 191469 ACTTAAATTCTGTAATCCTTGAAGGATGGGTCTTTAGTGTAGTCATTTATTTTTGG-TGTGCTAATATGCTCTGCATATAGCTTGATCGTAAGTGCAGTTTT s panTro2.chr4_random 3230096 101 + 6711082 ACTTAAATTCTGTAATCCTTGAAGGATGGGTCTTTAGTGTAGTCATTTATTTTTGG-TGTGCTAATATGCTCTGCATATAGCTTGATCGTAAGTGCAGTTTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5399824 102 + 72422247 ACTTAAATTCTGTAATCCTTGAAGGATGGGTCTTTAGTGTAGTCATTTATTTTTTGCTGTGCTAACATGCTCTGCATCTAGCTTGATCGCAAGTGCAGTTTT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119419080 102 + 196418989 ACTTAAATTCTGTAATACTTGAAGGATGATTCTTTAGTGCAGTCATTTATTTTTTGCTATGCTAATATGCGCTACGTCTAGCTTGATCCTAAGTGCAGTTTT i rheMac2.chr3 C 0 C 0 s equCab2.chr4 67759036 97 - 108569075 ACTTAAATTCTGTAATCCTTGAAGGATGAATCTATAGTAAAGTCATTTAATTTTTGTTATGCCGCTACGTTCTGCATCTAGTTTGATCCCATATGTA----- i equCab2.chr4 C 0 I 268 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=163879.000000 s hg19.chr4_gl000194_random 44550 246 + 191469 AAGTTTTCCTGTGTCATACTGTA---ATGATAGGGTTGGCTCTGCAATTATTGCCCTGCAGTACTTTGCTGAAGTTATAGCA-CAGCAAATA-----TTAGGAtttctaaaacagctttattggc-----agtttacatgccatgtaattcacccactcgaagtatatagttcagtggttttcagtatattcacagatgttgggaaccaacactccaatcaattttag-aattgtttttccacctcaaaaa-------------------aaaatcctat s equCab2.chr4 67759401 261 - 108569075 AAGCTTTCTTATGTCATATTGTAAACATGGTAGGGTTGGCCCTGCAATTATTGCACTATAGTGCCATGCCATGGCTATGGCCTTAGCAAATATTTATTTAGCAttttaaaaacagctttattgatatataattccacatcccatacaattcacctgtttgaagtgtacaattcagtgctttttagtatgttgacagatatccacaaccaacactcctgtcaattttagaaatttttttatcacctcaaaaa-------------------gaaaccctgt i equCab2.chr4 I 268 I 2 s rheMac2.chr3 119419182 265 + 196418989 AAGTTTTCCTGTGTCATACTATA---ATGGTAGGGTTGACTCTGCGATTATTGCACTGTGGTACTTTGCTGCAGTTATAGCA-CAGCAAATA-----TTAGGATTTCTAAaacagctttattgat-----aattcacataccatgtaattcacccacttgaagtatgcagtttggtggtttttagtgtattcacagatgttggtaaccgacactccagtcagttttag-aattgtttttccacctcaaaaaaaaaAAAAAAAAAAAAAATCAAATCCTAT i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5399926 254 + 72422247 AAGTTTTCCTGTGTCATACTGTA---ATGGTAGGGTTGGCTCTGCAATTATTGCCCTGTGGTACTTTGTCACAGTTATAGCA-CAGCAAATA-----CTAGGATTTCTAAaacagctttattggt-----aattcacataccatgtaattcacctactcaaagtatacagttcagtggtttt-agcatattcacagatgttggtaaccaacattccaatcaattttag-aattgtttctccacctcaaaaa----------aaaacAAATAAAATCCTAT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3230197 245 + 6711082 AAGTTTTCCTGTGTCATACTGTA---ATGATAGGTTTGGCTCTGCAATTATTGCCCTGCAGTACTTTGCTGAAGTTATAGCA-CAGCAAATA-----TTAGGAtttctaaaacagctttattggc-----agttcacatgccatgtaattcacccactcgaagtatatagttcagtgttttttagtatattcacagatgttgggaa-caacactccaatcaattttag-aattgtttttccacctcaaaaa-------------------aaaatcctat i panTro2.chr4_random C 0 C 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=62450.000000 s hg19.chr4_gl000194_random 44796 151 + 191469 gccctttagcttattttctttc-----------------tatttatttatttatttat-------------------tttaagagatggggtcttgctcagtcgaccagcccaggctggagtacagtggtgtaatcatagcttagtgcagccttgaactcctgggctcaagcaatcctcccatctca s rheMac2.chr3 119419447 168 + 196418989 GCCCTTTAGCTTAGTTTTTGCTGGCAGGATCAACTAGGTTTTTTGtttttgtttttgt-------------------ttttagagatggggtcttgctcagtcgcccagcccaggctggagtgcagtggtctgaacatagcttagtgcagccttgaactcctgggctcaagcgattctcccacctca i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5400180 170 + 72422247 GCCCTTTACCTTATtttattta-----------------tttttatttatttatttatttatttatttatttatttatttaAgagatggggtcttgttcagtcgaccagcccaggctggaatgcagtggtgtaatcatagcttagtgcagccttgaactcttgggctcaagtgatcctcccacctca i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3230442 143 + 6711082 gccctttagcttattttctttc-------------------------tatttatttat-------------------tttaagagatgaggtcttgctcagttgaccagcccaggctggagtacagtggtgtaatcatagcttagtgcagccttgaactcctgggctcaagcaatcctcccatctca i panTro2.chr4_random C 0 C 0 e equCab2.chr4 67759662 2 - 108569075 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=22184.000000 s hg19.chr4_gl000194_random 44947 54 + 191469 gcctccctagtagctaggagtacaggcatggaccacaacaccctgcctcctgtg s panTro2.chr4_random 3230585 54 + 6711082 gcctccctagtagctaggagtacaggcatggaccacaacaccctgcctcctgtg i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5400350 54 + 72422247 gtctccctagtagctaggagtacaggcatggaccacaacaccctgcCTCGTGTG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119419615 54 + 196418989 gcctccctagtagctaggagtataggcatgcaccacaacaccctgcCTCCTGTG i rheMac2.chr3 C 0 C 0 s vicPac1.scaffold_737 431122 4 - 594432 ------------------------gtca-------------------------- i vicPac1.scaffold_737 N 0 N 0 e equCab2.chr4 67759662 2 - 108569075 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=58144.000000 s hg19.chr4_gl000194_random 45001 116 + 191469 ccgtttagctttcaattc-tgtctctccacatacatcatctgcacccccgcagttgtagcactggcaatcaccaatctttctgcctctggatt-ccctattgcgtgtgtttcatataa s panTro2.chr4_random 3230639 116 + 6711082 ccgtttagctttcaattc-tgtctctccacatacatcatctgcacccccgcagttgtagcactggcaatcaccaatctttctgcctctggatt-ccctattgtgtgtgtttcatataa i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5400404 113 + 72422247 CCCTTTAGCTTTC-ATTC-CATCTCTCCACATCTGTCATCTGCACCCCTGCAGTTGTAGCActggc-atcaccaatctttctgtctctggatt--cctattgtgtgtgtttcatataa i ponAbe2.chrUn C 0 I 382 s rheMac2.chr3 119419669 116 + 196418989 CCCTTTAGCTTTGAATTC-CATCTCTCCATATCCATTATCTGCACCCCCGCAGTTGTagtcccggcaatcaccaatctttctgcctctggatt-ccctattctgtatgtttcatatga i rheMac2.chr3 C 0 C 0 s equCab2.chr4 67759664 86 - 108569075 ccctttagctgtcactactcaaccctctatatccgtca-----------------------------accattaaacttc---tctatggatttctctattctggacatttcatatga i equCab2.chr4 I 2 C 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=213818.000000 s hg19.chr4_gl000194_random 45117 641 + 191469 atgggattatctatcatatgggcttttgttactggattctttcacttggcataatacttgcaaggtttgtctatgctgtgacatgtatcag-----------------------------tacttactttttatggccacatgatactctgttacatggat-acactggattttgtttatgcacttgtcagttgatggatatttaggacattgtttaccccttttggctattatgaataatgctgctataaacattggtgtataagtttttgtgtaga----------catttgtcttcggtgtttatctaggagcagaattgctcagatgcat-ataac----tgtctaa----ttgaggaactgccaaactactttttgaaatggctgcattattttttattccctccagcagtgtattaaaatttcagtttctccacatcttcacaaacacttactgtgtgactttttaattgtagctattataatgtatgtgaaattgtatctccttgtggttttgatttgtattttcctattgaaggt-------agtgtcttttctcatgcttattggccatgtgtatatcttctttgggga---aatatttgttgagatcttttgtcattttttTTTCCTGCTAGGGATCATTTTAttttaaaaac--aatagactttttttt----agcagttttagaaaaaatagag s panTro2.chr4_random 3230755 648 + 6711082 atgggattatctatcatatgggcttttgttactggattctttcacttggcataatgcttgcaaggtttgtctatgctgtgacatgtatcag-----------------------------tacttactttttatggccacatgatactctgtttcatggat-acactggattttgtttatgcacttgtcagttgatggatatttaggacattgtttaccccttttggctattatgaataatgctgctataaacattggtgtacaagtttttgtgtaga----------catttgtcttcggtgtttatctaggagcagaattgctcagatgcat-ataac----tgtctaa----ttgaggaactgccaaactactttttgaaatggctgcattattttttattccctccagcagtgtattaaaatttcagtttctccacatcttcacaaacacttactgtgtgactttttaattgtagctattataatgtatgtgaaattgtgtctccttgtggttttgatttgtattttcctattgaaggtaatgtccagtgtcttttctcatgcttattggccatgtgtatatctcctttgggga---aatatttgttgagatcttttgtcatttttttttcctgctagggatcattttattttaaaaac--aatagactttttttt----agcagttttagaaaaaatagag i panTro2.chr4_random C 0 C 0 s rheMac2.chr3 119419785 656 + 196418989 atgggattatatatcatatgggcttttgtgactggattctttcacttggcatagtgctttcaagatttgtctatgccgtaacatgtatcag-----------------------------tacttactttttatggccaaatgatactccattacatggat-acactgcattttgtttatccacttgtcagttgatggacatttaggacattgtttaccccttttggctattacaaataatgctgctataaacattggtatacaagattttgtgtaga----------catttctcttgggtgtatatctaggagtagaattgctggcacacatgataac--tatgttcag----ttgaagaagtaccagattattttttgaaatggctgcattattttttattccctccagcagtgtattaaaatttcagtttctccacatcttcacaaacatttactgtgcgactttttaattctagccatcctagggtatgtgaagtggtatttcattgtaattttgatttgtattttcctgttgatagtgatgtccagcatcttatcttatgcttattggccatttgtgtatcttctttggaga---aatatttgttcagatcctttgcca-ttttttttcctgctagggatcattttatttgaaaaacataatagactttttttttttgagcagttttataaaaaattgag i rheMac2.chr3 C 0 C 0 s equCab2.chr4 67759750 607 - 108569075 atggaatcatatcatatgtgatcttttgtgactggcttctttcacttggcataatgttttcaagatttg----tgttgtagcacatatcagtagttacttttcacttacttttttttccctacttactctttgtgaccaaaagatattccattacgtggataatatcacattctgtttacccgtttctcagttg------gtttggg---ttgtttctcccttttggctgttgtgaataatgctgctataaatgtttgtgtaaaaggttttgtgtagacatatgtttccatttctcttgggtatatacctgagagtggaactgctgggtcctatggtaagtctatgttcaattgtttgaggaagtgccagact--tttccaaaacggctgcaccattttatattctcacgagcagtgtgtgagagttttgatttttccacatcctcacaaacat----tatctgactttttgcttctagccatcctagcatgtgagaagtgggatttcattgtagttttgatttgcatttccctgttgacaatgatggcaagcatcttttctt--------------------tctttttttttaagattggacctgagctaacatctgttgccaatctttttttt----------------------------------actttttcct-------------------------- i equCab2.chr4 C 0 I 214 e dipOrd1.scaffold_8908 33935 2543 - 48807 I e ponAbe2.chrUn 5400517 382 + 72422247 I a score=154972.000000 s hg19.chr4_gl000194_random 45758 347 + 191469 agaaaagtgcagagagtccacatatgctccct----tacagtgcccctgcccagttctcccaactcttaacaccttgcgctactgtgctaaatcgattagatttgatgaactgatacttatat-----ctgaaattcatagtttacttcagggttcactc--tgtgttttatagatttttggatttgacaaatgtataatgtcatgtacccaccattacagtattatgtagaacagtttcattgccct-aaaaatctcctgtgctccactgagtcattcctccccctcctcttcctcccaaac----ccccggtcattactaatcttttta----ctctctaattttgcctctcccagaatgtcata s panTro2.chr4_random 3231403 347 + 6711082 agaaaagtgcagagagtccacatatgctccct----tacagtgcccccacccagttttcccaactcttaacaacttgcgctactgtgctaaattgattagagttgatgaactgatacttatat-----ctgaaattcatagtttacttcagggttcactc--tgtgttttatagatttttggatttgacaaatgtataatgtcatgtacccaccattacagtattatgtagaacagtttcattgccct-aaaaatctcctgtgctccactgagtcattcctccccctcctcttcctcccaaac----ccccggtcattactgatcttttta----ctctctaattttgcctctcccagaatgtcata i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5400899 350 + 72422247 agaaaagtgcggagagttcacatatgctccctgcaatgccccgcccccacccagtcttcctgactcttaacatcttgcgttactgtgctacatttattagattcgatgaactgatacttacat-----ctgaagttcatagtttacat-agcattcactc--tgtgttttatagatttttggatttgacaaatgtataatgtcatgtacccaccattacactattatgtagaacagtttcattgccct-aaaaatctcctgtgctccactgattcattcctcctcctcctcttcct--catac----ctccagtcattactgagctttttac--tctctctaattttgcctctcccagaatgtcatg i ponAbe2.chrUn I 382 C 0 s rheMac2.chr3 119420441 364 + 196418989 aggaaaatgtagagagttcacatatgctcccc---ctccagtgcccccgcccagttttcccaactcttaacatcttgcgttactgtgctacatttattagatttgatgaactgatacttatatattaactgaagttcatagtttatgtaagggttcactctttgtgttttatagatttttggatttgacaagtgtttaatgccatgtacccaccattacagtattatgtagaacagtttcattgccctaaaaaatctcctgtgctccacttattgattccttcctgtcctcttcctcctaaatcccgccccagtcattactgatctttttactttctctttcactttgcctttcccagaatgtcata i rheMac2.chr3 C 0 C 0 e equCab2.chr4 67760357 214 - 108569075 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=53364.000000 s hg19.chr4_gl000194_random 46105 108 + 191469 taatag-----atcatgtagtatgtatccttttcagactggcttctttcacccagcagtatacatttagggttcttctgtgc------tttttcatggcttgatagctcattttttaaa s rheMac2.chr3 119420805 113 + 196418989 taatagttgtaatcatatagtatgtagccttttcagactggcttctttcacctagcagtatacatgtagggttcttccgtgt------tttttcatggcttgatagctcattttttaaa i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5401249 107 + 72422247 taatag-----atcatgtagtgtgtgtcctcttcagactggcttctttcacctagcaatatacatttagggttcttctgtg-------ttttttatggcttgatagctcattttttaaa i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3231750 108 + 6711082 taatag-----atcatgtagtatgtatccttttcagactggcttctttcacccagcagtatacatttagggttcttctgtgc------tttttcatggcttgatagctcattttttaaa i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67760571 89 - 108569075 taattg-----gctattt-gtatgtcttccttggaga-------------------aatatctattca--gttcctttgccctttttGTTTTTCCCTGCTGG---GATCAGTTTATGAA i equCab2.chr4 I 214 I 79 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=54941.000000 s hg19.chr4_gl000194_random 46213 110 + 191469 ttgcagaataatattccatttgtttgcatgtattgcagtttgtttatccattcttgaattgtctatctctaattgggttgttttgtctttttattacagaattgtaattg s panTro2.chr4_random 3231858 110 + 6711082 ttgcagaataatattccatttgtttgcatgtattgcagtttgtttatccattcttcaattatctatctctaattgggttgttttgtctttttattacagaattgtaattg i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5401356 110 + 72422247 ttgctgaataatattccatttgtttgcatgtattgcagtttgtttatccattcTTGAAttatccatctctaattgggttgttttgtctttttattactgaattgtaattg i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119420918 110 + 196418989 ttgctgaataatattccatttgtttgcatgcactgcagtttgtttatccgttcttgaattatacatctctaattgggttactttgtctttttgttactgaattgtaatag i rheMac2.chr3 C 0 C 0 e equCab2.chr4 67760660 79 - 108569075 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=473736.000000 s hg19.chr4_gl000194_random 46323 706 + 191469 ttccttatgtaccccagacacaaatcccttgtgttcatcagggttgcaggatacaagatcaatatacaaaaatcaatagtat----ttgacacactttaactgagtactacatactcacaatgagcaatcagaaaatgaaattaaga-aagcaacttcatttatcatagcatcaacaagaataaaa----tactgatatattt-----aagaagtgtaaaacttgtactctgaaaactatagaacatttttgaaagaaatgaaagaagatctaaataaatgtaaaagtatcccatgatcatggacctaaggcttaacattgttaagaaggcaatactccctaaactcatctacaaatttaacttcatccctgtcagaatcccggatgagttctctgta-aaatggacaagctgactctgaaattcatatggaattacaaaggactaggaatagccaaaataatcttttgaaaatga-gaacaaagtaggagaactcatacttactgactttaaaacttactacaagtcagtggtaatcaggacaatataatactggcagaaggatagatgtatagaccagtgggatagaattgagagt-cagatatgaacccatacatatataacc-actg-cttttgacaagggtgccaagattattcagtggggaaagaa------gtttgagaactggcacaaggacaactagatatgtaaacatatgcaaatcctgg s rheMac2.chr3 119421028 713 + 196418989 tttcttatgtattctaggtagaaATCCCTTCTgttcatcagggttgcaggatacaagatcaatatacaaaaatcaatggtgt----ttgacacactttaactgaatactacatacttaaaatgagcaatctgaaaattaaattaaga-aagcaacttcatttataatagcatcaaaaagaataaaatacttagaaataaattt-----aagaagtgcaaaacttgtatactgaaaactataaaacattgttgaaagaaatgagagaagatctaaataaatggaaaagtatcccatgatcatgaatcgaaggcttaacattattaagatggcagtcctccctaaactgatttacagattcaacttgatccctatcagaatcccagatgagttctttgta-aaatctacaagctggctctgaaattcatatggaattgcaagggactaagaatagccaaaacaatcctttgaaaatgaggaacaaagtaggagaactcatacttactgattttaaaacttactacaagacaatggtaataaggacagtataatactggcagaaggatggatgtatagatgagtgggatagaattgagagt-cagaagtgaacacatacatatataatcaacttatttttgacaagggtgccaagagtattcagtggggaaagaa------gttcaaaaactggcacagtggcaaccagatatgtaaacatatgcaaaacctgg i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5401466 711 + 72422247 ttccatatgtattgtagacacaaatcccttatgttcatcaaggttgcaggatacaagatcaatatacaaaaatcaatagtat----ttgacacacttcaactgaatactgcatacttacaatgagcaatcagaaaatgaaattaaga-aagcaacttcatttatcatagcatcaacaagaataaaatacttactaataaattt-----aagaagtgtaaaacttgcactctgaaaactataaaacattgttgaaagaaatgaaagaagatctaaataaatgtaaaagtatcccatgatcatgggccgaaggcttaacat--ttaagatggcagtcctccctaaactcatctgcagatttaacttcatccctgtcagaatcccagatgagttctttgta-aaatcgacaagctgactctcaaattcatgtggaattgcaagggactgagaatagccaaaataatcttttgaaaatgaggaacaatgtaggagaactcatacttactgactttaaaacttactacaagacaatggtaataacaacaatataatactggcagaaggatagatgtacagaccagtgggatagaaatgagagt-cagatacgaacccatacatatataaccaactgatttttgacaagggtgccaagattattcagtggggaaggaa------gtttgaaaactggcacagggacaactagatgtgtaaacatatgcaaaacctgg i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3231968 706 + 6711082 ttccttatgtacaccagacacaaatcccttgtgttcatcagggttgcaggataaaagatcaatatacaaaaatcaatagtat----ttgacacactttaactgagcactacatactcacaatgagcaatcagaaaatgaaattaaga-aagcaacttcatttatcatagcatcaacaagaataaaa----tactgatacattt-----aagaagtgtaaaacttgtactctgaaaactatagaacattgttgaaagaaatgaaagaagatctaaataaatgtaaaagtatcccatgatcatgtacctaaggcttaacattgttaagaaggcagtactccctaaactcatctacagatttaacttcatccctgtcagaatcccaaatgagttctctgta-aaatggacaagctgactctgaaattcatatggaattgcaaaggactaagaatagccaaaataatcttttgaaaatga-gaacaaagtaggagagctcatacttactgactttaaaacttactacaagacagtggtaatcaggacaatataatactggtagaaagatagatgtatagaccagtgggatagaattgagagt-cagatatgaacccatacatatataaac-actg-cttttgacaagggtgccaagattattcagtggggaaagaa------gtttgagaactggcacaaggacaactagatatgtaaacatatgcaaaacctgg i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67760739 698 - 108569075 tcccatatGTTTC----------ACCCATTATgttcagcaaggttgta-gatacaagatcaatatgcaaaaatcaattgtatttgattgatacacttgtaatgaacactatacacttgtaatgaataatccaaaaatgaaattaagagaaacaattccatttacaatagcttcaaatacagtaaaatacttaggaataaatttagcaaaagaagtgtaaaacttttactttgaaaactataaaacattgttgaa---------agaagaaataaataaatggaaactcatcccatgatcctgaattgaagacataacattgttaagatgatagtactgcccaaattgatcttcagattcaatgtgattcccttcagaatcccagatgacttctttgtagaaattgacaaactgactttaaaatttgtatggaagtgcaggagacccagaatacccaaaacaatcttgaaaaa-----gaacaaagtaggagaactcatgcttcctgacttcaaaacttgctacaaaacaagggtaagcaggacagtatggtaccagcacgaggatagacgtatataccagtggaatacaactgagagtccagaaatgaacacatacatctgtagtcaactgatttttaagaaggatccaaagaccattcaatggggaaagactaatctatttgacaactggtactgggacaactggacat----acacatgcaaaga---- i equCab2.chr4 I 79 I 5 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=23217.000000 s hg19.chr4_gl000194_random 47029 24 + 191469 aataggacctttacccaacaccac s rheMac2.chr3 119421741 24 + 196418989 agttgaacctttacccaacatcat i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5402177 24 + 72422247 agtaggacctttacccaacaccat i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3232674 24 + 6711082 agtaggacctttacccaacaccat i panTro2.chr4_random C 0 C 0 s turTru1.scaffold_83963 7912 24 - 16807 tattaaacctttacctcacaccat i turTru1.scaffold_83963 N 0 N 0 s equCab2.chr4 67761442 24 - 108569075 agttggatctttacttcacaccat i equCab2.chr4 I 5 C 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=108004.000000 s hg19.chr4_gl000194_random 47053 176 + 191469 atacaaaaactatggatgcaaaaaaagtggatcaaatggatccattttgagctaatccacgtaaatgtaaggactaaaactataaaatcctgagaagcaaacataggagtaaattgtcatgaccttgaatttggcaaagttttcttaaatatgagacc---------agcaacaagaataaaaat s rheMac2.chr3 119421765 175 + 196418989 atacaaaaactatggatacaaaaaaa-tgcatcaaatgaatccacttttaactaatccacataaatgtaagggctaaaactataaaatcctgagaagcagacatagaagtaagttgtcatgaccctggatttggcaaatctttcttaaatatgagacc---------agaaacaataatacaaat i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 5402201 176 + 72422247 atacaaaaactatggatacaaaaaaaatgaatcaaatggatccattttgagctaatccacataaatgtaaagactaaaactataaaatcctgagaagcaaacataggagtaaattgtcatgatcttggatttggcaaagttttcttaaatatgagacc---------agcaacaagaataaaaat i ponAbe2.chrUn C 0 N 0 s panTro2.chr4_random 3232698 175 + 6711082 atacaaaaactatggatgcaaaaaaa-tggatcaaatggatccattttgagctaatccacgtaaatgtaaggactaaaactataaaatcctgagaagcaaatatacgagtaaattgtcatgaccttgaatttggcaaagttttcttaaatatgagacc---------agcaacaagaataaaaat i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67761466 149 - 108569075 atacaaaaatt------------aaagtggatcaaag---------------------acctaaatgtaagagctaaaactacaaaattcttagaagaaaacatggaggtaaatcttcgtgacattggatttcacaaagatttcttagatatgacaccaaaagcacaagcaacaagagaaaa--- i equCab2.chr4 C 0 C 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=106315.000000 s hg19.chr4_gl000194_random 47229 167 + 191469 tgatgaattggacttcatcaaaattaaacatttttgcacttc-aaaggacaccgtcaagaaagtgaaaagacaactcacaagatggaagaaaatacttgtaaatcatgtgt-AGCACTTTTTGATGATAAACTTGAGGAAGAC------TTTTTTAttttttatttttattatac s panTro2.chr4_random 3232873 167 + 6711082 tgatgaattggacttcatcaaaattaaacatttttgcacttc-aaaggacaccatcaagaaagtgaaaagacaactcacaagatggaagaaaatacttgtaaatcatgtgt-AGCACTTTTTGATGATAAACTTGAGGAAGAC------TTTTTTAttttttatttttattatac i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11799683 173 + 72422247 tgatgaattggacttcatcaaaattaaacatttttgcacttc-aaaggacaccatcaagaaagtgaaaagataacccacaagatggaagaaaatacttgcaaatcatttat-AGCACTTTTTGATGGTAAACTTGAGGAAGACATTTATTTTTTTAttttttgtttttattatac i ponAbe2.chrUn N 0 C 0 s rheMac2.chr3 119421940 141 + 196418989 tgatgaattggacttcatcaaaattaaacagttttgcacgtctaaaggacaccatcaagaaa-tgaaaagatagcccacaagttggaagaaaatacttacaaatcatgtat-AGCACTTTTTGATGGTAAACTTGAGGAAGAC-------------------------------- i rheMac2.chr3 C 0 I 236 s equCab2.chr4 67761615 165 - 108569075 --ataaattggacatcatcaaaattaaa-aattttggactgc-aaaagacatcatcaagaaggtgaaaagacaacccacagaatagaagaaaatacttgcaaatcatGCTTAAGCCTTTTTCGACAGTAAACTTGAGGAAGAC------ATTCGTCTTTTCTCTCTTAGCTAGAC i equCab2.chr4 C 0 I 197 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=54409.000000 s hg19.chr4_gl000194_random 47396 210 + 191469 tttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgccgcacccactatctcatcatttacattaggtatatctcctaatgctatccctcctccctccccccaccccacgacaggccccggtgtgtgatgttccctatcctgtgtccgagtgttctcattgttcaatttccacct s panTro2.chr4_random 3233040 210 + 6711082 tttaagttctagggtacatgtgcacaatgtgcaggtttgttacatacgtatacatgtgccatgttggtgcactgcacccactaactcatcatttacataaggtatatctcctaatgctattcctcctccctccccccaccccatgacaggccccggtgtgtgatgttccccatcctgtgtccgagtgttctcattgttcaatttccacct i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11799856 210 + 72422247 tttaagttctagggtacatgtgcacaacgtgcaggtttgttacatacgtatacatgtgccatgttggtgtgctgcacccattaactcctcatttacattaggaatatctcctaatgctatccctccccgctccccccaccgcacgacaggccccggtgtgtgatgttccccatcctgtgtccaagtgttctcattgttcagtttccacct i ponAbe2.chrUn C 0 C 0 e equCab2.chr4 67761780 197 - 108569075 I e rheMac2.chr3 119422081 236 + 196418989 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=15967.000000 s hg19.chr4_gl000194_random 47606 66 + 191469 atgagcgagaacatgtggtgtttggttttctgtccttgcgatattttgctcagaatgatggtttcc s ponAbe2.chrUn 11800066 66 + 72422247 atgagtgagaacatgtggtgtttggttttctgtccttgcgatagtttgctcagagtggtggtttcc i ponAbe2.chrUn C 0 I 2 s panTro2.chr4_random 3233250 66 + 6711082 atgagtgagaacatgtggtgtttggttttctgtccttgcgatagtttgctcagaatgatggtttcc i panTro2.chr4_random C 0 C 0 s equCab2.chr4 67761977 35 - 108569075 ATGGCCAAGAACGTGTA---------TCTCTGTT---------ATTTACCTAA------------- i equCab2.chr4 I 197 C 0 e rheMac2.chr3 119422081 236 + 196418989 I e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=429744.000000 s hg19.chr4_gl000194_random 47672 678 + 191469 atatatatatatgtcAGTTGCCAGGACTGCTGGGCAAGCCTGGGAAAGAGAGTACCTGGG--GAAAGCAGCCTCCTG--CTCCCCCGTGCCTTCTTTGAGCCTGATGTTCATTTGATGTGGTACTATATAATCACATCCAGTTTACCCTTTGAAATTCCTTGA-TTGTTCTTTTCTATTTC---CTTGACACTGTCCTTTTACAGACCACATAATCTTATCTGGAATACTACAACAGTTTTCTTTTCTCAGTGATTTTAGAATAACCTGTCAAAAACTCATCTGACTATAGTAGTACCTGCTTACAACCTTTTAATTACTCCCCATTCCCTA-CCA-GGCTGTGTAGCTCACTTGAGCTCTGCTAGGTGGTGAGGGAATCTGGGTCCTTTTTCTGGTATTTGAATTCAGTGCTACATAGGTTACTGGCTGGGTTGACAATCTGAAATTGTAAATC---ATGAGTATTCTATGTAGATAGACTGTCACGATTTACAATAAAACATTGAC----ATGTCAAAGATCATGGTGATGTGAGGTTGGGTACTGTCTGTGAGAATTAATTGAGGAAATTAAAATTATATGGTTTTATTTACATAGAGTGTATAACAACTAGTTAAGGGATAGATG-------TCTTCTTATCTGACTTTCAAGTATCTAAGAGTGGATTATTGTGCTTGTTAAAGTTCTGGGAACCAT s panTro2.chr4_random 3233316 677 + 6711082 aTATATATATATGTCAGTTGCCAGGACTGCTGGGCAAGCCTGGGAAAGAGAGTACCTGGG--GAAAGCAGCCTCCTG--CTCCCCCGTGCCTTCTTTGAGCCTGATGTTCATTTGATATGGTACTATATAATCACATCCAGTTTACCCTTTGAAATTCCTTGA-TTGTTCTTTTCTATATC---CTTGACACTGTCCTTTTACAGACCACATAATCTTATCTGGAATACTACAACAGTTTTCTTTTCTCGGTGCTTTTAGAATAACCTGTCAAAAACTCATCTGACTATAGTAGTACCTGCTTACAACCTTTTAATTACTCCCCATTCCCTA-CCA-GGCTGTGTAACTCACTTGAGCTCTGCTAGGTGGTGAGGGAATCTGGGTCCTTTTTCTGGTATTTGAATTCAGTGCTACGTAGGTTACTGGCTGGGTTGACAATCTCAAATTGTAAATC---GTGAGTA-TATATGTAGATAGTCTGTCACAATTTACAATAAAACATTGAC----ATGTCAGAGATCATGGTGATGTGAGGTTGGGTACTGTCTGTGAGAATTAATTGAGGAAATTTAAATTATATGGTTTTATTTACATAGAGTGTATAACAACTAGTTAAGGGATAGATG-------TCTTCTTATCTGACTTTCAAGTATCTAAGAGTGGATTATTGTGCTTGTTAAAGTTCTGGGAACCAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11800134 681 + 72422247 ATATATATATATGTCAGTTCCCAGGACTGCTGGGCAAGCCTGGGAAAGAGAGTACCTGGA--GAAAGCAGCCTCCTG--CTCCCCTGTGCCGCCTTTGAGCCTGATGATCATTTGATGTGGTACTATATAATCACATCCAGTTTACCCTTTGAAATTCCTTGA-TGGTTCTTTTCTATATC---CTTGACTCTTTCCTTTTACAGACCAAATGATCTTATCTGGAATACTACAACAGTTTTCTTTTCTCAGTGTTTTTAGAATAACCTGTCAAAAACTCATCTGACTATAGTAGTACCTGCTTACAACCTTGTAATTAGTCCCCATTCCTTA-CCA-GGCTGTGTAGCGCACTTGAGCCCTGCTAGGTGGTGAGGGAATCTGGGTCCTTTTTCTGGTATTTGAATTCAGTGCTACATAGGTTACTGGCTGGGTTGACAATCTCAAATTGTAAATC---ATGAGTATGCTATGTAGATAGTCTGTCACGATTCACAATAAAACATTGACATTTATGTCAAAGATCATGGTGATGTGAGGTTGGGTACTGTCTGTGA-AATTAATTGAGGAAATTTAAATTATATGGTTTTATTCACATATAGTGTATAACAACTAGTTAAGGGATAGATG-------TCTTCTTATGGGACTTTAAAGTATCTAAGAGTGGATCATTGTGCTTGTTAAAGTTCTGGGAACCAT i ponAbe2.chrUn I 2 C 0 s rheMac2.chr3 119422317 679 + 196418989 ATATATATGTATGTCAGTTGCCAGGACTGCTGGGCAAGCCTGGTAAAGAGAACAGCAGGG--AAAAGCAGCCTCCTA--CTGCCCTGGGCCTTCTTTGAGCCTGATGATCACTTGATATGGAAC--TAGAATCACATCCAGTTTACCCTCTGAAATTCCTTGA-TTGTTGTTTTCTGTATC---CTtgacactgtccttttccagaccaaattatctcatctggaatactgcaatagttttcctttctcaatgcttttaGAATAACCTGTCGAAAAGTCATCTGATTATAGTGCTGCCTGCTTAAAACCTTTTAATTACTCCCCATTCCCTGTCTG-GGCTGCGTAGCTCACTTGAGCTCTGCTAGCTGGTGAGGGAATCTGGGTCCTTTTTCTGGTATTTGAATTCAGTGCTACACAGGTTACTGGCTGGGTAG--AGTCTCAAATTGTAAATC---ACGGGTATTCCATGTAGATAGTCTGTTACAATCTACAATAAAACATTGATGTTTGTGTCAAAGATCATGATGTTGTGAGGTTGGGTACTGTCTGTGACAATTTATGGAGGAAATTTAAGTTATATGGTTTTATTCACATATAGTGTATAACAACTAGTTAAGGGATAGATG-------TCATCATATCTGACTTTAAAGTAGCTAAGAGTGGATCATTGTACTTGTTAAAGGTCTGGGAACCAT i rheMac2.chr3 I 236 I 307 s equCab2.chr4 67762012 641 - 108569075 ----------------------AGTAGCATTGGGGAAGCCCAGCCAAGAGCACACAAGGGAAAAAAGCAGACTCCTTACTTCCGCTGTCTGTCTTTTGGGCCTGATTATAACTTGATATGGAATTGTAATGTCACAT---------CCTCTGAAATTTCTTGACTTGATATTTTTTACATCCTTCTTAATACTGGTCTTTTCCAGACCGAATGGTCTCACCTAGAGTACTACAACAGTTTTCCTTTCTCAAGGCTTTTAGAATAATGTATCAAAAACTCATTTGATCATAGTACTCCCTGCTTAAAACCTTTTAATTACTCCTTGTTCCCTA-CAAGGGTTGTGTGGCTCTCTTGAGGTCTGCCAGCTAGTGATGGGGTC--------CCATAGGGTCTTTGAATTCAACACTACACAGTAGAAT-ATGGGGCTAACAAAC-CAAATTCTAAATCATAATGAGTATTCTGTGTAGATAAGCTGTTACTATTTACAATAAGACATTG-------------TGATCATGGTGATATCAGGT----TACTCCCTGGGAGAACTTATTGAGGAAATTTAGATTATACCGTTTAA--CGCACACCGTGTATAATAACTAGTTAAGGGGTGGATGCCTGACTTCTTAATATCTGATTTTAAAGTATCTAACAGTGGATCATTTTGCTTGTTAAATGACTGGAAACCAT i equCab2.chr4 C 0 C 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=138287.000000 s hg19.chr4_gl000194_random 48350 200 + 191469 GGCTATTTTCTGAAAATACCTCAGTGATGACAAATGAATGACTACCAGCCTCTTGTAACATTA--GGACTCCAGTTCATCCCTTTGCTTCATAGGTGTGTCTTTTCCTTTTGTATATATTTGCTTTAGTGTAGAAAATAGGTTTTCTTGATTAGAAAT-----CTAAGAAGAATAAATTGAAAACTGGAGATTTTTCTATTGCTTTG s panTro2.chr4_random 3233993 200 + 6711082 GGCTATTTTCTGAAAATACCTCAGTGATGACAAATGAATGACTACCAGCCTCTCATAACATTA--GGACTCCAGTTCATCCCTTTGCTCCATAAGTGTGTCTTTTCCTTTTGTATATATTTGCTTTAGTGTAGAAAATAGGTTTTCTTGATTAGAAAT-----CTAAGAAGAATAAATTGAAAACTGGAGATTTTTCTATTGCTTTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11800815 200 + 72422247 GGCTATTTTCTGAAAATACCTCAGTGATGACAAATAAATGACTACCAGCCTATCGTAACATTA--GGACTCCAGTTCATCCCTTTGCTTCATAAGTATGTCTTTTCCTTTTGTATGTATTTGCTTTAGTATAGAAAATAGGTTTTCTTGATTAGAAAT-----CTAAGAAGAATAAATTGAAAACTGGAGATTTTTCTATTGCTTTG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119423303 196 + 196418989 GGCTATTTTCTGAAAATAACTCAGTGACGACA----AATGACTACCAGACTATCATAACATTA--GGACTCTAGTTCATCCCTTTGCTTCATAAGTATGTCTTTTCCTTTTGTATATATTTGCTTTGGTATAGAAAATAGATTTTCTTGATTAGAAAT-----CTAAGAAGAAGAAATTGAACACTGGAGGTTTTTCTATTTCTTTG i rheMac2.chr3 I 307 C 0 s equCab2.chr4 67762653 189 - 108569075 GGCTATTTTCTTAAAATACCTCAGTGATGTCAAAGAAATGACTTCCAGTC-ATCATAAAATTAACAGTTTCAAATCCATCTCTTTGCTTAATAA-TGTATCTCTTCTTTTTGTA----------------TAGAAAATAGATTTTCTTGATCAGAAATTCCAGCTAGGGAGAAGAAATTAAACATTGGAGATTTTCCTCTTGCTTTG i equCab2.chr4 C 0 C 0 e dipOrd1.scaffold_8908 33935 2543 - 48807 I a score=5965.000000 s hg19.chr4_gl000194_random 48550 15 + 191469 GATTACC-----------AAAA-TTAA s rheMac2.chr3 119423499 16 + 196418989 AATTACT-----------AAAAGTTAG i rheMac2.chr3 C 0 C 0 s ponAbe2.chrUn 11801015 16 + 72422247 GATTACT-----------AAAAGTTAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3234193 15 + 6711082 GATTACC-----------AAAA-TTAA i panTro2.chr4_random C 0 C 0 s dipOrd1.scaffold_8908 36478 26 - 48807 aactaccgcacatggcagaaaa-taaa i dipOrd1.scaffold_8908 I 2543 N 0 s equCab2.chr4 67762842 12 - 108569075 AATTACC-----------A----TTAA i equCab2.chr4 C 0 I 2 a score=131990.000000 s hg19.chr4_gl000194_random 48565 196 + 191469 TGTAATTTGGCACTATATCCCTGTGCCATTATTGTCTCTCTGGTAAGTAGATGGTAGGGTTTTGGGTGATTAAATTT--TTTTCCCTATTTTGCTTATTTAATGGGCATATGTTTGTATTAAAAAGGGGAAAATAAATAGGAATGTAGAAGATGTTAACTAATCGTGAAAGTTATTGGGAAGGGTTA-CCTaatttaaa s panTro2.chr4_random 3234208 196 + 6711082 TGTAATTTGGCACTATATCCCTGTGCCATTATTGTCTCTCTGGTAAGTAGATGGTAGGGTTTTGGGTGATTAAATTT--TTTTTCCTATTTTGCTTATTTAATGTGCATATGTTTGTATTAAAAAGGGGAAAATAAATAGGAATGTAGAAGATGTTAACTAATCGTGAAAGTTATTGGGAAGGGTTA-CCTAATTTaaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11801031 194 + 72422247 TGTAATTTGGCAGTATATCCTTGTGCCATTATTG--TTTCTGGTAAGTAGATGGTAGGGCTTTGGGTGATTAAAATT--TTTTTCCTATTTTGCTTATTTAATGGGCATGTGTTTGTATTAAAAAGGGGAAAATAAATAGGAATGTAGAAGATGTTAACTAATTGTGAAAGTTATTGGGAAGGGTTA-CCTaatttaaa i ponAbe2.chrUn C 0 C 0 s rheMac2.chr3 119423515 194 + 196418989 TGTAATTTGGCAGTATATCCCTATGCCATTATGATCTCTCCAGTAAGTAGACGGTAGGGCTTAGGAAAATAGGAATTTATTTTTCCTATTTTGCTTGTTTAATGGCCATGTGTTTGTATTAAAAA-GGGAAAATAAATAGGAATGTAGAGGATGTTAACTAATCGTGACAGTTATTGGGAAGAGTTA-CCTAATTT--- i rheMac2.chr3 C 0 N 0 s equCab2.chr4 67762856 194 - 108569075 TGTGGTTTTGCTATACCTCTCTGTACCACTAT---CTTTCTAGTAAGTAGATGGTAGGGCTTTGGCTGATTAAAAAT--TTTTTCCTGTTCTGCTTACAGAATGGACATGTATTTGTATTTAAAAAAGGGAAATAAATAGGAATTTAGAGGATATTAACTAATTGTGAAAGTTACTGTGAAGTGTGATCCTAATCTGAA i equCab2.chr4 I 2 N 0 a score=149502.000000 s hg19.chr4_gl000194_random 48761 565 + 191469 agttggccagccatggcagaactgcctgtagtcccagctgtgggggaggctgaggcaagaggatggcttgagttcaggggatagaggttacagtgagctatgattgtgccactgcatttcagcctgagggacagagccagaccctgtctcagaaaaaCCTAGAACAGCAACAAACAGAGAGAGGAGCCTGGACGGATTGAGCAATATTAGTGTCCGGGAGCTGCTGTAGTGAtggcttatgacatcacgaatttattctctcacagttctggaggccacaagtccaaaatcaaggtgtgggcagaaatgcgctccctctgcagactcctggggaggatgcttgtttcttccagctCTGCGACTGTGGTGCCTGCAGCCATTGGAACCAGCTCTGCACGGCTCAGACCTGGGTGATGAGGACACAGCTTTGCAGGTGGGCAGCCACATCCCCAGGGGGAGACTGTGGGCCTGTGGCAGGGTAGGGGCAACCAGTGCAGGGGCTCCCCATTGTTGCCCCTGAGCTCCTGGGGCTTGTGGAGAAAGACAGGTGGATGCACACATACTG s ponAbe2.chrUn 11801225 565 + 72422247 agttggccagccatggcaacactgcctgtactcccagctgtgggggaggctgaggcaagaggatggcttgagcccgggggatggaggttacagtgagctatgattgtgccactgcacttcagcctgagggacagagccagaccctgtctcagaaaaaCCTAGAACAACAACAAACAGAGAGAGGAGCCTGGACGTATTGAGCTATATTAGTGTCCGGGGGCTGCTGTAGTGAtggtttacaacatcaggaatttattctctcacagttctggaggccacaagtccaaaatcaaggtgtgggcagaaatgcgctccctctgcagactcttggggaggattcttgcttcttccagctCTGCGACTGTGGTGCCTGCAGCCACTGGAACCAGCTCTGCACGGCTCAGACCTGGGTGATGAGGACACAGCTTTGCAGGTGGGCAGCCACATCCCCAGGGGGAGCCTGTGGGCCTGTGGCAGGGTTGGGGCAGGCAGGGCAGGGACTCCGCATTGTTGCCTCTGAGCTCCTGGGGCTTGTGGAGAAAGATGGATGGACACGCACATACTG i ponAbe2.chrUn C 0 T 6525 s panTro2.chr4_random 3234404 565 + 6711082 agttggccagccatggcagcactacctgtagtcccagctgtgggggaggctgagggaagaggatggcttgagttcaggggatggaggttacagtgagctatgattgtgccactgcatttcagcctgagggacagagccagaccctgtctcagaaaaaCCTAGAACAGCAACAAACAGAGAGAGGAGCCTGGACGGATTGAGCAATATTAGTGTCCGGGAGCTGCTGTAGTgatggcttacgacatcaggaatttattctctcccagttctggaggccacaagtccaaaatcaaggtgtgggcagaaatgcactccctctgcagactcttggggaggatgcttatttcttccagctCTGCGACTGTGGTGCCTGCAGCCATTGGAACCACCTCTGCACGGCTCAGACCTGGGTGATGAGGACACAGCTTTGCAGGTGGGCAGCCACATCCCCAGGGGGAGACTGTGGGCCTGTGGCAGGTTAGGGGCAACCAGGGCAGGGGCTCCCCATTGTTGCCCCTGGGCTCCTGGGGCTTGTGGAGAAAGACAGGTGGATGCACACATACTG i panTro2.chr4_random C 0 C 0 a score=12659.000000 s hg19.chr4_gl000194_random 49326 131 + 191469 CAGCTCCCTGGAtctgagccttggtttccctacctgtgaaatgggCACCCATGGCAGCTCAGAAGTGTCTGGGAGCATCCCCTGTGGGGGAAGGTGTGGGGGGCTGCTGGGGCACAGTCATGGGGAACCCC s panTro2.chr4_random 3234969 131 + 6711082 CAGCTCCCTGGAtctgagccttggtttccctacctgtgaaatgggCACCCATGGCAGCTCAGAAGTGTCTGGGAGCATCCCCTGTGGGGGAAGGTGTGGGGGGCTGCTGGGGCACAGTCATGGGGAACCCC i panTro2.chr4_random C 0 C 0 e ponAbe2.chrUn 11801790 6525 + 72422247 T a score=124914.000000 s hg19.chr4_gl000194_random 49457 481 + 191469 AGTCCCCCTCTCCATGTGCTTCCCTCAATGCTCCCTGATGCCAGCAGTCCTGCCCCCGAACAGAAAGGGGCATTCCTGTGAGTTCCTTGTGTGGGGGACTGGTCACAGAGACTCCCCAAGTGCAGGGCAGGGTGGAGGGAGGCTGAGGGGTGGTTGAATGGACAGGAGAAGAGCTCTCTCCAGTCCCTTGGGTCTGGGTGGCCTGGGGAGCATCCATTTGGGCAGGCAGCTGGTGGGGCTGGTGGCTGAGCCACTGTGGCTCGGGGACCCCAGGCCAGGACAGAGTAGGGTGGGCAGGGAGAGCAGAGTGCGAGCATATGGGGCAGGACAG-GTGTCTCCTGGACAGAAAGAGCCCTGGTCACTCATGGCTGCAGCATAGCCATGGCGACAGGAAAGTGCTGCTGTACATTGTGCTCCTGGGGCTGGCTCCCAATGGACACCCAACAGCATCTCCCCCATTGTACTGTGGGATGCTGGCAGT s panTro2.chr4_random 3235100 481 + 6711082 AGTCCCCCTCTCCATGTGCTTCCCTCAATGCTCCCTGATGCCAGCAGACCTGCCCCCGAACAGAAAGGGGCATTCCTGTGAGTTCCTTGTGTGGGGGACTGGTCACAGAGACTCCCCAAGTGCAGGGCAGGGTGGAGGGAGGCTGAGGGGTGGTTGAATGGACAGGAGAAGAGCTCTCTCCAGTCCCTCGGGTCTGGGTGGCCTGGGGAGCATCCATTTGGGCAGGCAGCTGCCGGGGCTGGTAGCTGAGCCACTGTGGCTCAGGGACCCCAGGCCAGGACAGAGTAGGGTGGGCAGGGAGAGCAGAGTGTGAGCATATGGGGCAGGACAG-GTGTCTCCTGGACAGAAAGAGCCCTGGTCACTCATGGCTGCAGCATAGCCATGGCGACAGCAAAGTGCTGCTGTACATTGTGCTCCTGGGGCTGGCTCCCAATGGACACCAAACAGCATCTCCCCCATTGTACTGTGGGATGCTGGCAGT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11795265 482 + 72422247 AGTCCCCCCCTCCATGTGCTTCCCTCAATGCTCCCTGATGCCAGCAGACCTGCCCCCGAAAAGAGAGGAGCGTTCCTGTGAGTTCCTTGTGTGGGGGATGGGTCACAGAGACTCTCCAAGTGCAGGGCAGGGTGGAGGGAGCCTGAGGGGTGGTTGAATGGTCGGGAGAAGAGCTCTCTCCAGTCCTTCAGGTCTGGGTGGCCTGGGGAGCATCCGTTTGTGCAGGCAGCTGGCGGAGCTGGTGGCTGAGCCACTGTGGCTCAGGGACCCCAGGCCAGGCCAGAGTAGGGTCGGCAGGGAGAGCAGAGGGTGAGTGTACGGGGCAGGACAACGTGTCTCCTGGACAGAAACAGCCCTGGTCACTCATGGCTGCAGCGTAGCCATAGCAACAGGTAAGTGCTGCTGTACATTGTGCCCCTGGGGCTGGCTCCCAATGGACACCCAACAGCATCTGCCCCACTGTACTGTGAGATGCTGGCAGG i ponAbe2.chrUn T 6525 C 0 a score=152431.000000 s hg19.chr4_gl000194_random 49938 322 + 191469 GGTGCTGGGCACTGGGGTAAGAGCCTTGGCAAGCCCTTCGCTCCCTGGGTGTGAGACTTTGGGCTCCTGGATGCCTGGGTTTCTGTGTCCTATTTTTCCCATGGAAGATGTTTGGGGTGCTCCCAGGAAATGGGGAGGGCCCTGGGGGGTCAGGATTGTATTATTAAAGCCAGAAAGTCTGGGGTTCCATTTTTAGCACAAGGCAGGCAGCCCATGAGCCCCAGCCCAGTGGCCAGCCTGTGTGGGA----GGGGAGTGGGGGTCTGAAGGAGTGAGGCTTCTGTTACTGCAGGCTCCACAGCAGCCCCCCAGGGTGGCCCGTGTG s rheMac2.chr15 3762797 324 - 110119387 GGTGCTGGGCACTGGGGGAGGAGCCTTGGCAAGCCCTTCCCTCCCTGGGCACCAGACCTTGGGCTTCTGGATGCCTGGGTTCAAGTATCTAGTTTTTCCTGTGGAAGATGTTTGGGATGTTCCCAGAAAATGGGGAGGGCCCTGGGGGGTCAGGATTGTATTACTAATCCCAGAAAGTCTGGGGTTCCATTTTTAGCACAAGGCAGGCAACCCATGTGCCCCAGCCCAGCGGCCAGCCTGTGTGGGAGA--GGGGAGTGGGGGCCTGAAGGAGTGAGGATCCTATTACCGCAGCCTCCCCTGCAGCCAGCCAGGATGGCTGGTGTG i rheMac2.chr15 N 0 C 0 s ponAbe2.chrUn 11795747 326 + 72422247 GGTGTTGGGCACTGGGGGAAGAGCCTTGGCAAGCCCTGCCATCCCTGGGCATCAGACCTTGGGCTCCTGGATGCCTGGGCTTATGTGGCCTATTTTTCCCGTGGAAGATGTTTGGGGTGCTCCCACAAAATGGGGAGGGCCCTGGGGAGTCAGGATTGTATTATTAAACGCAGAAAGTCTGGGGTTCCATTTTTAGCACCAGGCAGGCAGCCCGTGAGCCCCAGCCCAGCGGCCAGCCTGTGTGGGAGAGGGGGGAGTGGGGGTCTGAAGGAGTGAGGCTTCTATTACCGCAGGCTCCACTGCAGCCCCCCAGGGTGGCCGATGTG i ponAbe2.chrUn C 0 I 6823 s panTro2.chr4_random 3235581 321 + 6711082 GGTGCTGGGCACTGGGGTAAGAGCCTTGGCAAGCCCTTCGCTCCCTGGGTGTGAGACCTTGGGCTCCTGGATGCCTGGGTTTCTGTGTCCTATTTTTCCCATGGAAGATGTTTGGGGTGCTCCCAGGAAATGGGGAGGGCTCTGGGGGGTCAGGATTGTATTATTAAAGCCAGAAAGTCTGGGGTTCCATTTTTAGCACAAGGCAGGCAGCCCATGAGCCCCAGCCCAGTGGCCGGCCTGTGTGGGA----GGGGAGTGGGGGTCCGAAGGAGTGAGGCTTCTGTTACTGCAGGCTCCACTGCAG-CCAACAAGGTGGCCCGTGTG i panTro2.chr4_random C 0 C 0 a score=12425.000000 s hg19.chr4_gl000194_random 50260 27 + 191469 GGCTGGACAGCGGGCACTGCACCAGGG s rheMac2.chr15 3763121 27 - 110119387 GGCTGGACAGCAGGTACTACACTAGGG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11802896 27 + 72422247 GGCTGGACAGCGGGCACTGCACCAGGG i ponAbe2.chrUn I 6823 C 0 s panTro2.chr4_random 3235902 26 + 6711082 GGCTGGACAGC-GGCACTGCGCCAGGG i panTro2.chr4_random C 0 M 1348 a score=192441.000000 s hg19.chr4_gl000194_random 50287 784 + 191469 GCTCTGGCGCCGACCTTGAGCCATGCATCTAATGCCTGTGAGAGTGATCTCTAGGAGCCACTGCACAAGGGGGCAGATGAGGGAACCCTGACATGGGACAGCCGAGGGCGACCCCAACACGGAGCGGG-CAGCTGTGTCCAGGCTCCACTGGATTCCGCAGAGGACAGAACACAGCTCTGACTCCAGGGTGTGGGCTCACTGAGGGACAGGACAGGCTGGGGTTGGGAGAGGGCCA---TGCTGCAGCTGGGCCAGATCCCACCTGCACCCCTCAGATGGCAGGGCCTGGACGTCTCCATCCCCACCCTGACCCGGTCAGTAACAGCCATGGGCCAGCAGCCCCCAGCAACCCCTCCCTCTGTGAACTGCCAAGGACAGGAGGTACCACAGTCTCTTCCAGGCAAGAGCTGCTGGAGCCTTCTTTATTCTTGTGCTAGAAGCCCAGGGTGG---------------------------------GGAGAGGAGCCTGAGAACAGCCCAGTGTGGGCATCCACCTTCCTGCCCACTTTGGAGGTCTGAGTCACCTCCGGCCACTCTCCCAATCCCCAGGAGCCCAGaggcttcctggagcaagccacacctgatctccaccatgggtaggagttcaaggccaggCCAACAGGGACTCCACAGAGGGGCCTGTGGGTTAGCAGCAGCTGCCAGTGTCCAGATGGCCTCAGGGGTGGGGGTTAGACAATCTGGAGGTCAGCAGGGAATTCAGCATGAGGAGACAGCCCTTAGGGTTCTGGCCCAGCAGCCCCAGGTGCTGGCTCTGCACTGAGTCATGAAGTTT s rheMac2.chr15 3763148 807 - 110119387 GCACTGGCGCCGACCTTGAGCCATGCATCTGATGCCTGTGAGAGTGATTTCTAGGAACCACTGCACGTGGGGGCAGATGAGGGAACCCCGACATGGGACAGCCGAGGGTGACCCCAACACGGAGGGGGCCAGCTGTGTCCAGGCTCCACTGGATTCCGCAGAGGACAGAACACAGTGCTGACTGTAGGATGTGGGGTCACTGAGGGTTAGGATAGGCTGGGGTTGGGAGAGGGCCATGGTGCAGCAGCTGGGTCACATCCCACCTGCACCCCTCAGATGGCAGGACCTGGTCCTCTCCATTCCCACCCCGACCCGGTCAGTAACAGCCACGGGCCAGCAGCCCCTAGCAACCCCTCCCTCCCTGAACTGCAGAGGATGGGACGTACCACAGTCTCTTCCAGGCAAGAGCTGCTGTAGCTTTCTTTATCCTTGTGCTAGAAGCCCAGGGTGGCTGGGGTGTGGGCCCACTGTGG-----------GGAGAGGGGCCTGAGAACAGTCCAGGGTGGGTGTCCACCTTCCTGCCCACTGTGGAGGCCTGAATCACCCCCAGTCACTCTCCCAATCCCCAGGAGCTCAGGGGCTTCCTGGAGCAAGCCACAGCTGATCTCCACCATGGGTAGGAGCTCCAGGCCAGGTCAACAGGGACTCCACAGAGGGGCCTGTGGGTTAGCAGCAGCTACTGGTGTCCAGATGGCCTCAGGGGTGGGGGTTAGACAGTCTGGAGGTCAGCAGGGAATTCAGCATGAGG---TGGCCCTTAGGGTTCTGGCCCAGCAGCCCCAGGGGATGGCTCTGCACCGAGTCATGAAGCTT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11802923 818 + 72422247 GCTCTGGCGCTGACCTTGAGCCATGCATATGATGGTCGTGAGAGTGATGTCTAGGAACCAATGCACGAGGGGGCAGATGAGGGAACCCTGACATGGGACGGCCGAGGGTGACCCCGACACGGAGGGGGACAGCTATGTCCAGGCTCCACTGGATGCCTCGAAGGACAGAACACAGCTCTGACTCTAGGGTGTGGGGTCACTCAGGGGTAGGACAGGCTGGGGTTGGGGGAGGGCCA---TGCTGCAGCTGGGGCACATCCCACCTGCACCCCTCAGATGGCAGGGCCTGGACCTCTCCATCCCCACCCTGACCCGGTCAGTAACAGCCATGGGCCAGCAGCCTCCAGCAACCCCTCCCTCCCTGAACTGCCGGGGACAGGAGGGACCACAGTCTCTTCCAGGCGAGAGCTGCTGGAGCCTTCTTTATCCTTGCGCTAGAAGCCCAGGGTGGCTGGggtgtgggcccggtgtgggcccagtgtgggGAGAGGGGCCTGAGAACAGCCCAGTGTGGGCATCCACCTTCCTGCCCACTTTGGAGGTCTGGATCACCCCCAGCCACTCTCCCAATCcccaggagcccagaggcttcctggagcaagccacatctgatctccaccatgggtaggagctcaaggccaggccaataggGACTCCACAGAGGGGCCTGTGGGTTAGCAGCAGCTGCCAGTGTCCAGATGGCCTCAGGGGTGGGGGTTGGACAATCTGGAAGTCAGCAGGAAATTCAGCATGAGGAGATGGCCCTTAGGGTTCTAGCCCCGCAGCGCCAGGTGCTGGCTCTGCACTGAGTCATGAAGCTT i ponAbe2.chrUn C 0 C 0 e panTro2.chr4_random 3235928 1348 + 6711082 M a score=11187.000000 s hg19.chr4_gl000194_random 51071 31 + 191469 GTGGGCCAGGGGCGTTGGCCTCTCTCTAGCT s rheMac2.chr15 3763955 30 - 110119387 GCAGGCC-GGGGCATTGGCCTCTCTCTAGCT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11803741 31 + 72422247 ACAGGCCAGGGGCGTTGGCCTCTCTCTAGCT i ponAbe2.chrUn C 0 C 0 s calJac1.Contig1178 223433 31 - 516707 GGGGGCTAGGGCCCTCAGTCTCTCTCTGGCT i calJac1.Contig1178 N 0 I 2306 e panTro2.chr4_random 3235928 1348 + 6711082 M a score=185070.000000 s hg19.chr4_gl000194_random 51102 768 + 191469 GAGAGTGACTTCCATCACTGCTGTCATTAGCCTCCCCTGCATCAACCTGTCCCTGGGGTGGGAGCACAGTTGGCACAGGGACCCTCAGgccttagttttccctgctgtaaaatgcatgtgatag----gctgtcatgaggtctgaaggagttaaaacctgccatgtgctcaggatgacacctagcTCGGTGCCTCCTACCCTGGTGCCACCATCCGGCATCAGAGATGAAATACTTCTCCCAGGCCCCCTCCCCTGGCACCCCCCACACTCAGCTCTCCATCAGCCACCCCCTCCAGGGTGGGACAAGGAGGTCCTGAGCCTGATGGGGACCTGACAGGGCTGGGCAGCGCCACCTGGGCCTGGGCGATAATGGGAGCCTGAGTGTGGGGCCTGCATGGAAGGAGCCATTGTTTCTTGGGCCTCTTAGTGGCTACTTCCCTAGAGTCTGGGAGAAGTGCTGCTGTTCAAGAGGGGACAGTGCCAGCAGCTCCTTCTGAGGCTGGGGTGGGCACAGCGTGGAGGGGCCTCACCTCCACCCACCTCCCATGGAGGTTCCTGGCTCTCCTGGAGGACTCCTTGCTACTGGGCTGAGGC----ACCAGGGCTGACCAGTCCCAGGATGGTGTTGGACAACCTGCATCCCCCTGCAGCAGGCAGGGAGGGCACTGCAGCCACCACCCACCCACACCTGACCCCTCCCTGGCCATCGTGTCTAGGGTGGCAGGGAGTGAAGCCCCCACCCAACAACCTCCCCCAGCTCAGGGGCCTTTGAGT s ponAbe2.chrUn 11803772 769 + 72422247 GGGAGTGACTTCCATGACTGCTGTCATTAGCCTCCCCTGCATCAACATGTCCCTGGGGTGGGAGCACCGTGGGCGCAGGGACCCTCAGgcctcagttttccctgctgtaaaatgcatgtgatagtgaggctgtcaggaggcctgaaggagttaaaacctgccatgtgctcaggatggcacctagctcaGTGCCTCCTAGCCTGGTGCCACCATCTGGCATCAGAGATGAAACACTTCTCCCAGGCCCCCTCCCCGGGCAACCCCCACACTCAGCTGTCTATCAGCCACCCCCTCCAGGGTGGGACAAGGAGGTCCTGAGCCTGATGAGGACCCGACAGGGCTGGGCAGCGCC------GCCTGGGCAATAATGGGAGCCTGAGTGTGGGGCCTGCATGGAGGGAGCCATTGTTTCTTGGGCCTCTTAGTGGCTACTTCCCTAGAGTCCGGGAAAAGTGCTGCTGCTCAAGAGGGGACAGTGCCAGCAGCTCCCTCTGAGGCTGGGGTGAGCACAGCATGGGAAGGCCTTGCC-CCACCCACGTCCCATGGAGGTTTCTGGCTCTCCTGGGGGACTCCTCGCTACTGTGCTTAGGCTGGCACCGGAGCTGACCAGGCCCAGGATGGGGTTGGACCACCTGCATCCCCCTGCAGCAGGCAGGGAGGGCTCTGCAGCCACCACCCATCCACACCTGATTCCTCCCTGGCCGTCGTGTCTAGGGTGGCAGGGAGTGAAGCCCCCACCCAACAACCTCCCCCAGCTCAGAGGCCTTTGAGT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3763985 775 - 110119387 GGGAGTGACGTCCATCACTGCTGTCATTAGCCTTCCCTCAATCAACCTGTCCCTGGGGTGGGAGCACAGTGGGTTCTGGaaccctcaggtctcggttttccctgctgtaaaatgcacatgatagtgaggctgtcatgaggcctgaaggagttaaaatctgccatgtgctcaggatggcacctagcTCGGCGCCTCCCAGCCTGGTGCCACCATCTGGCATCAGAGATGAAACACTTCTCCCAGACCCCCTCCCCTGGAACCCCCCGCACTCAGCTCTCCATCAGCCACCACCTCCAGGGTGGGACAAGGAGGCCCTGCACCTGATGGGGACCCAACAGCGCTGGGCAGCGCCACCTGGGTCTGGGCGATAATGGGAGCCTGAGTGTGGGGCCTGCATGGAGGGAGCCATTGTCTCTTGGGCCTCTTAATGGCTACTTCCCTAGAGTCC-AGAGAAGCGCTGCTGCTCAAGGGGGGACAGCGCCAGCAGCTCCCTCTGGGGCTGGAGTGGGCACAGCATGGGGGTACCTTGCCCCCACCCACCTCCCATGAAGGTTCCTGGCTCTCCTGGGGGACTCCTCGCTACAGTGCTGAGGCTGACCCTGGGGCTGACCAGGCCCAGGATGGTGTTGGACCCCCTGCATCCCCCTGCAGCAGGCAGGGAGGGCTCTGCAGCCATCACCCACACACATCTGACCGCTCCCTGACTGTCGTTTCCAGGGTGGCAGGGAGTGAAGTCCCCACCCAATAACCTCCCCCAGTTCAGGGGCCTTTGCGT i rheMac2.chr15 C 0 C 0 e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=35761.000000 s hg19.chr4_gl000194_random 51870 113 + 191469 TCACCACCATCTGCCTCACTGCAGGTTTCCCCTGTGCTGGG-GGTGATTGCAGGGAGATGGTTCTTTGGCGTTCCCTGGGCAGGTCATTGCCTCAGCCCCTGCCTGGTGTCCTG s rheMac2.chr15 3764760 113 - 110119387 TCACCAGCAGCTGCCTCACTCCAGGTTTCCCCTGTGCTGGG-GGTGATTGCAGGGAGATGATTCTTTGGTGTTCCCTGGGCAGGTCATTGCCTCAGCCCCTGCCTGGTGTCCTG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11804541 104 + 72422247 TCGCCACCATCTGCCTCACTGCAGGTTTCCCCTGTGCTGGA-GGTGATTGCAGGGAGATGGTTCTCCGGTGTTCCCTGGGCAGGTCATTGCCTCAGCTCCTGCCT--------- i ponAbe2.chrUn C 0 C 0 s felCat3.scaffold_149463 124699 100 + 235511 TCCCCCGCATCTGCCCCA-----------CCCCGTGCCAGGTGGAGGTGGCAGGGAGAGGTCCCATGGGTGTTCTGTGT---GGTCATTGTCCCAGGCCCTGCCTGGCACCCCG i felCat3.scaffold_149463 N 0 I 744 e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=30624.000000 s hg19.chr4_gl000194_random 51983 127 + 191469 GAGCAGCTTTGAGGAGCTACACGGACAGGACACCAACTGTCTGCAGCCCCCAGGTGAGGCTTGGCTGCTGTGTCCCACTGCCTCTGCTCCTGGCTGTCAAA-GCCCCATGGTAACAGCATCCAGGGTG s rheMac2.chr15 3764873 127 - 110119387 GAGCAGCTTGGAGAAGTTACATGAACAGGAAACTAACTGTCTGCAGCCCCCAGGTGAGACTTGGCTGCTGTGTCCCGCTGCCTCTGCTCCTGGCTGTCAAA-GCCCCATGGTAACAGCATCCAGGGCA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11804645 126 + 72422247 -AGCAGCTTTGAGGAGCTACATGGACAGGACACCAACTGTCTGCAGCCCCTAGGTAAGGCTTGGCTGCTGTGTCCCACTGCTTCTGCTCCTGGCTGTCAAAAGCCCCATG-TAACAGCATCCAGGGCG i ponAbe2.chrUn C 0 C 0 e felCat3.scaffold_149463 124799 744 + 235511 I e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=14149.000000 s hg19.chr4_gl000194_random 52110 26 + 191469 AATTTAAATGGCACCCCAAAGAATAA s ponAbe2.chrUn 11804771 26 + 72422247 AATTTAAATGGCACCCCAAAGAATAA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3765000 26 - 110119387 AATTTAAATGGCACCCCAGAGAATAA i rheMac2.chr15 C 0 C 0 s papHam1.scaffold16121 37395 26 + 55498 AATTTAAATGGCACCCCAGAGAATAA i papHam1.scaffold16121 N 0 I 6409 e felCat3.scaffold_149463 124799 744 + 235511 I e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=190066.000000 s hg19.chr4_gl000194_random 52136 788 + 191469 GAGTGGGCCTGGGTGTCACTGTAGTGGCTGGTGGCTTGTGACAAGTAGTGTGGCTTCCGTGGTGATGAGAAGTGACAGTTCCCCCTGAATCTGCACTGGAGAGAAGGTCCTGGAAGCTTTCAGGCCCACCCTCCAGGGTCTGGGTCTGCATCTCTGAGAGTGGCTGGGTGAGCAGAAGAATCCTGACTGCCTGGCAGTCGGGTTTGGAGCTGGGGAGGGCTGGGCCTGGTTAGCAATGAGCCTATCACAGTGAACCAGAGCTCAAGATAAAGCGAGAGGCCTAGCCCAGACACCTCCTTCCCTGGTCCCAGCCCCTGTGCCTTGGCCTGTGCAGTGGAAGCCAGGCTCCCTCCTCCAGGAAGTCTTCCCTGCACTTCCTGCTCACACACAGCCTCTCCCAGATTTCTCCCCATCCAGGCTGAGTAGGATTCCCAAGAAGGCTCCTCCCTGAGCCAACTGCCTGCAGTCAACATTATCACCTCCCCCAGTGAATGGCAGTAGTGTTTTTCATCTTCAGCAGTGGCCTCTGGAGGGGTCCTAGCAGGTCGGGGAGAGAGGTCTGAGTTAGTCCCACGTGAAAGGCAGCCCATGCCTCTCCTCCCAGCAACCCCTAGCAGCAACTTCCACCTGGCTGACCCCACCCAGCTCACAGAGTTGCCCAGCTGGGTGTCCTTGTGGTTGATTGGGGGGAAGGGGCTGTTACCTCCCGGTCCCCTTCAGGCTGAGACAAGAGCCCTGTGGGTCTGGATCTTGCAGATGGGACCCCCACCCACATGCTCTCCAGGTGG s ponAbe2.chrUn 11804797 788 + 72422247 GAGTGGGTCTGGGTGTCACTGTAGCGACTGGTGGCTTGCGACACATAGTGTGGCTTCCGTGGTGACGGGAAGTGACATTTCCCCCTGAATCTGCACTGGAGAGAAGGTCCTGGAAGCTTTTGGGCCCACCCTCCAGGGTCTGGGTCTGCATTTCTGAGAGCAGCCGGGTGGGCAGAAGAATCCTCGCTGCCTGGTAGTCGGGTTTGGAGCTGGGGAGGGCCAGGCCTGGTTAGCAATGAGCCTATTGCAGTGAACCAGAGCTCAAGTTAAAGTGAGAGACCCAGCCCAGACACCTCCTTCCCTGGTCCCAGTCCCTGTGCCTTGGCCTGTGTGGTGGAAGCCAGGCTCCCTCCTCCAGGAAGCCCTCCCTGCACTACCTGCTCACATACAGCCTCTCCCAGATTTCTCCCTATCCAGGCTGAGTAAGATTCCCAAGAAGGCTCCTCCACGAGGCAACTGCCTGCAGTCAACATTATCACCTCCCCCAGTGAACGGCAGTAGTGTTTTCTGTCTTCAGCAGTGGCCTCTGGAGGGGTCCTAGCAGGTCGGGGAGAGAGGTCTGAGTTAGCCCCACGTGAAAGGCAGCCCATGCCTCTCCTCCTAGCAACCCCCAGCAGCAACTTCCACCTGGCTGACCCCACCCAGCTCACAGAGCTGCCCAGCTGGGTGTCCTTGTGGTTGATTGGGGGGAAGGGGCTGTTACCTCCCGGTCCTCTCCAGGCTGAGACAAGAGCCCTGTGGGCCTGGATGTTGGAGATGGGACCCCCACCCACATGCTCTCCGAGTGG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3765026 762 - 110119387 GAGTGGGCCTGGGTATCACTGTCGTGACTGGTGGCTTGCGACAAGTAGCGTGGCTTCCGTGGTGATGGGAGGTGTCATTT-CCCCTGAATCTGCACTGAAGAGAAGGTCCTGGAAGCTTTCGGGCCCACCCTCCAGGGTCTGGGTCTGTGTCTCTGGGAGTGGCCAGGTGGGCAGAAGAATCCTCGCTGCCTGGCAGTCAGGTTTGGAGCTGGGGAGGGCTGGGCCCAGTTAGCAATGAGCTTATCGCGGTGAACCAGAGCTCAAGATAAAGCGAGAGGCCCAGCCCAGACACCTCCTTCCCTGGTCCCAGCCCCTGTGCCTTGGCCTGTGTGGTGGAAGCCAGGCTGTCTCCTCCAGGAAGCCCTCCCTGCCCTGCCTGCTCACACACAACTTCTCCCAGATTTCTCCCCATCCAGGCTAAGTAGGATTCCCAAGAAGGCTCCACCCCCAGGCAACTGCCTGCAGTCAACATTGTCACCTCCCCCAGTGAGCGGCAGTGGTGTTTTTCCTCTTCAGCAGTGGCCTCTGGAGGGGTCTCAGCAGGTGGGGAAGAGCGGTCTGAGTTAGCCCCACGTGAAAGGCAGCGGATGCCTCTCCTC-----------------------CCACCT-GCTGACCCTACCCAGCTCACAGAACTGCCCAACTAGGTGTCCTTGTGTTTGATTGGGGGG-AGGGGCTGTTACCTCCCAGTCCCCTCCAGGCTGAGACAAGAGCCCTGTGGGCCTGGATCTTGGAGATGGGACTCCCACCCACATGCTCTCCGGGGGG i rheMac2.chr15 C 0 I 19 e felCat3.scaffold_149463 124799 744 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=4911.000000 s hg19.chr4_gl000194_random 52924 54 + 191469 ATGCCCACCCTGAGCTGTTCTCAGGCCCCTCTCCCCACACTGGGCCCACACCCC s ponAbe2.chrUn 11805585 54 + 72422247 ATGCCCACCCTGGGCTGTTCTCAGGCCCCTCTCCCCACACTGGGCCCACACCCA i ponAbe2.chrUn C 0 C 0 e rheMac2.chr15 3765788 19 - 110119387 I e felCat3.scaffold_149463 124799 744 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=99243.000000 s hg19.chr4_gl000194_random 52978 409 + 191469 GGAGGGAACTCCATGTACCCCTGCCGATCTGCCCATCTGAGCCTCAGGGGTCCTGGGCACTGA--------GAGCTGGGCTGGGCTGAGCTCAGGTACACACTGTCATTGGGGACGGAGAGGGGATGCTGAAGTGGGTGCTTCTGCGTGGGGCCTGCCTGGAGGATCGCCACAGCAGGTGCACCCAGCAGCCAGACCAGCTTCTAGCAGAATAAGCGCACTGT-CACAGGGGTATGTGAGCTGAGGCTGGGGGCCTGGAGGTGCAGGGGGAGGAGTTGGGGAGATGCAGAGGCCCCAAAGATGTCCCAAGTCCCTAAGACTCTGGTGAGGGAATGGAGGAGCCAGCACTGGTGGGGAAGTGGGCAGGGGGAACTGGATGGCCTGGCTCTGAGCTGGACACACGGTCTGCACCCACACT s ponAbe2.chrUn 11805639 410 + 72422247 GGAGGGAACTCCATGTACCCCTGCTGATCTGCCCATCTGAGCCTCAGGGGTCCTGGGCACTGA--------GAGCTGGGCTGGGCTGAGCTCGGGTACACACTGTCATTGGGGACAGAGAGGGGATGCTGAAGGGGGCGCTTCTGGGTGGGGCCTGCCTGGAGGATCACCCCAGCAGGTGTACCCAGCAGCCAGACAAGCTTCTAGCAGAGTAAGCGCCCTGTCCACGGGGTTATGTGAGCTGAGGCTGGGGGCCTGGAGGTGCAGGGGGAGGAGTTGGAGAGATGCAGAGGTCCCAAAGATGTCGCAAGGCCCTAAGACCCTGGTGAAGGAATGGAGAAGCCAGCACTGGTGGGGAAGTGGGGAGGGGGAGCTGGATGGCCTGGCTCTGAGCTGGACACATGGTCTGTGCCCACACC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3765807 417 - 110119387 GAAGGGAGCTCCATGTACCCCTGGCGATCTGTCCATCTGAGCCTCAGGGGTCCTGGGCActgagctgggctggtctgggctgggctgagctgggGTATGCACCGTCATTGGGGACAGAGAGGGGATGCTGAAGCAGGTGCTTCTGGGTGGCGCCTGCCTGGAGGATCACCCCAGCAGGTGCACCCAGCAGCTGGATGAGCCTCTAGTAGAGAAAGTGCCCTGT-CCGGGGGGTATGTGAGCTGAGGCTGGGGGCCTGGAGGTGCAGGGGGAGGAGTTGGGGAGATGCAGAGGTCCGAAAGATGTCCCAAGGCTGTAAGACCCTGGTGAAGGAATGGAAGAGCCAGCACTGGTGGGGAAGCGGGGAGGGGGAGCTGGATGGCCTGGCTCTGGGCTGGACACATGGTCTGCGCCCACACC i rheMac2.chr15 I 19 C 0 e felCat3.scaffold_149463 124799 744 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I e panTro2.chr4_random 3235928 1348 + 6711082 M a score=114853.000000 s hg19.chr4_gl000194_random 53387 246 + 191469 TGAGCTGTGCTGTGAAGGCCCAGTCCCCACCTGGGCATGTCCTGTCCTCTGAGGCACAGGGATTCCTCCCCCTCAGCTCTGACCCCTCATCTCCAACTGTTGGGATGACGAGTCCATAGGCAGAGCCAGCCTCACAGGGGACCCAAAGGCCAGTTCAGATGGACAGCAACTGGAGGTCCCACCGGG----CACACACACACACTGTGCAGAAAGCTAACGCACTGTTTATTTGGGGGATTGG-GGGGAAGC s rheMac2.chr15 3766224 245 - 110119387 TGAGCTGTGCTGTGGAGCCCCAGTCCCCACCTGGGCACGTCCTGTCCTCTGAGGCACAGGGATTCCTGGTCCTCGGCTCTAACCCCTCATCTCCCACCATTGGGATGATGAGTCCGTAGGCAGAGCCAGCCTCACAGGGGACCCAAAGGCCAGTTCAGACGGACAGCAAGTCAAGGTCCCACTGGG------CACACACACTCCGTGCAGAAAGCTAACGTGCTGTTTGTTTGGGGACTTGGCGGGGAAGC i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11806049 250 + 72422247 TGAGCTGTGCTGTGGAGCCCCAGTCCCCACCTGGGCACTTCCTGTCCTCTGAGGCACAGGGATTCCTGGTCCTGGGCTCTGACCTCTCATCTCCAACTGTTGGGATGATGAGTCCATAGGCACAGCCAGCCTCACAGGGGACCCAAAGGCCAGTTCAGATGGACAGCAACTCGAGGTCCCACCGTGCACACACACACACACACTGTGTAGAAAGCTAACGCGCTGTTTATTTGGGAGATTGG-GGGGAAGC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3237276 246 + 6711082 TGAGCTGTGCAGTGGAGGCCCAGTCCCCACCCGCCTTTGTCCTGTCCTCTGAGGCACAGGGATTCCTCGCCCTCTTTTCTGACCCCTCATCTCCAACTGTTGGGATGACGAGTCCATAGGCAGAGCCAGCATCACAGGGGACCCAAAGGCCAGTTCAGATGGACAGCAACTGGAGGTCCCACCGGG----CACACACACACACTGTGCAGAAAGCTAACCCACTGTTTATTTGGGGGATTGG-GGGGAAGC i panTro2.chr4_random M 1348 C 0 e felCat3.scaffold_149463 124799 744 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I a score=164079.000000 s hg19.chr4_gl000194_random 53633 131 + 191469 ACCGT-GCCGCTG-------------------------CTCACTGGTAGCCAGCCAGCTGCAGAATGGTGGGGTAGCAAGTACGATGGGCCATGCACTTCTGGCGGTCGATGAAGACACTGTTGGTCATGGCGGTGACGTCCTTCTCCAGGCTCATG s panTro2.chr4_random 3237522 131 + 6711082 ACCGT-GCCGCTG-------------------------CTCACTGGTAGCCAGCCAGTTGCAGGATGGTGGGGTAGCAAGTACGATGGGCCATGCACTTCTGGTGGTCAATGAACAGACTGTTGGTCATGACAGTGACGTCCTTCTCCAGGCTCATG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11806299 131 + 72422247 ACTGT-GCCGCTG-------------------------CTTACTGGTAGCCAGCCAGCTGCAGGATGGTGGGGTAGCGAGTACGATGGGCCATGCACTTCTGGCGGTCGATGAAGAGACTGTTGGTCAAGGCAGCGATGTCCTTCTCCAGGCTCATG i ponAbe2.chrUn C 0 I 142 s rheMac2.chr15 3766469 132 - 110119387 ACCGTGGCAGCGG-------------------------CTCACTGGTAGCCAGCCAACTGCAGGATGGTGGGGTAGCGAGTACGATGGGCCATGCACTTCTGGCGGTCGATGAAGAGACTGTTGGTCATGGCGGTGATGTCCTTCTCCAGGCTCATG i rheMac2.chr15 C 0 C 0 s tetNig2.chr18 8736561 131 - 11077504 ------------AC--------------CCAACGACGGGTCCTCAGTACCCTGACAGCACAGAGACGGACGGGTACCGTCTGCGTTTAGCCATGCACTTGTCCCTCTCGATGAAGAGCGAGTGGGTCTTGCAGTGGATGTCCTTCTCCAGGGTGATG i tetNig2.chr18 N 0 C 0 s danRer6.chr1 4910720 143 - 59305620 --------------CATACTGCAGCCCACTGAAAAAGGTGTTTCAGTATCCAGACAGCACTGTGACGGTGGGGTATCTAGTGCGGTGCGTCATGCACTTCTCTCGGTCAATGAGGAGGGAGTTTGTTTTGCAGGCGATGTCTTTCTCCAGGTTCAAT i danRer6.chr1 N 0 C 0 s fr2.chrUn 158500703 119 - 400509343 --------------------------------------CTCTTCAGTAtccagacagcacagacacGGGCGGGTAGCGCCTGCGCTGAGCCGTGCACTTGTCTCTCTCGATGAAGAGTGAGTGGGTCTTACAGTTGATGTCCTTCTCCAGGGCGACG i fr2.chrUn N 0 C 0 s gasAcu1.chrIX 5404470 94 - 20249479 ---------------------------------------------------------------AACGGCTGGGTATCGCTGGCGGTGAGTCATGCACTTCTCCCTGTCGATGAACAGCGAGTTGGTTTTACAGCGGATGTCCTTCTCGATGGTAATG i gasAcu1.chrIX N 0 C 0 s oryLat2.chr1 8937624 112 - 39973033 ---------------------------------------------GTATCCAGACAGCCTTGAGGTGGATGGTAAATGCCGGCGCTGAGTCATGCACTTCTCCCCTTCAATGAAGAGTGATTGGCTTTTACAGCTGATGTCTTTTTGCAGCTCCATA i oryLat2.chr1 N 0 C 0 s xenTro2.scaffold_27 3024002 119 + 4425020 --------------------------------------CCTACTGGTAGCCAAGGAGCTTCATTCCATGGGGGTAACGGGTTCGGAGGGTCATGCACTTCTCTCTGTCAATGAAAATGCTGTTGGCCTTGTTGGCAATATCTTTTTCAAGGGACATT i xenTro2.scaffold_27 N 0 C 0 e felCat3.scaffold_149463 124799 744 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I a score=86715.000000 s hg19.chr4_gl000194_random 53764 55 + 191469 TGGATGTCCTTGAGGTTGCGCAGGGACTGCTCCGCTTGTAGAAGCTTCTCCCGCA s panTro2.chr4_random 3237653 55 + 6711082 TGGATGTCCTCAAGGTTGCGCAGGGACTGCTCCGCTTGTAGAAGCTTCTCCCACA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11806572 55 + 72422247 TGGGTGTCCTCGAGGTTGCGCAGGGACTGCTCCGCTTCTAGAAGCTTCTCCCGCA i ponAbe2.chrUn I 142 C 0 s rheMac2.chr15 3766601 55 - 110119387 TGGGTGTCCTCGAGGTTGCGCAGGGACTGCTCTGCTTCTAGAAGCTTCTCCCGCA i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_27 3024121 55 + 4425020 CTTGTATCTTCCAGATTTCTCAGGGATTGTTCAGAGTCTTCCAATTTCAACTTCA i xenTro2.scaffold_27 C 0 C 0 s tetNig2.chr18 8736692 55 - 11077504 CGCGACTcctccaggtgacacagagaGTCTCTggcctccctcagctgctgctgca i tetNig2.chr18 C 0 I 3 s danRer6.chr1 4910863 55 - 59305620 CTGCTCTCCTCCAGGTCAGACAGAGACTTTTGTGCTTCATAAAGCTGCTGCTGCA i danRer6.chr1 C 0 C 0 s oryLat2.chr1 8937736 55 - 39973033 CGGGATTCCTCCAGGTTACTCAGGGAGATCCTGGCCTCATTCAGCTTCTGCTTCA i oryLat2.chr1 C 0 I 687 s gasAcu1.chrIX 5404564 55 - 20249479 CGTGACTCCTCCAGGTGGGACAGGGAGCCTCTGGCCTCACTCAGCTGCTGGCGCA i gasAcu1.chrIX C 0 I 3 s fr2.chrUn 158500822 55 - 400509343 CGCGACTCCTCCAGGCGACTCAGGGAGCTCCTGgcctccctcagctgctgctcca i fr2.chrUn C 0 I 3 e felCat3.scaffold_149463 124799 744 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I a score=21063.000000 s hg19.chr4_gl000194_random 53819 47 + 191469 GCGCTGTGATGGACTTGTACAGCTCCTCCACCTCACTCACCAGCTTG s panTro2.chr4_random 3237708 47 + 6711082 GCGCTGTGATGGACTTGTACAGCTCCTCCACCTCACTCACCAGCTTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11806627 47 + 72422247 GCGCTGTGAGGGACATGTTCAGCTCCTCCACCTCACTCGCCAGCCTG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3766656 47 - 110119387 GCGCTGCGAGGGACATGTTCAGTTCCTCCACCTCGCTCACCAGCCTG i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_27 3024176 47 + 4425020 GAGCATCAAGGGAATCTGTAAGTTCTCCCACTTCGCTGACCAGCCTG i xenTro2.scaffold_27 C 0 I 880 s tetNig2.chr18 8736750 37 - 11077504 acgcCACCGTGGCGCCGATCTGCCGCACCTCCGCTTC---------- i tetNig2.chr18 I 3 I 11 s fr2.chrUn 158500880 44 - 400509343 aCGCCACTGTGGCCTCGATCTGCCTCACCTCCGCTTCCAG---GCTG i fr2.chrUn I 3 C 0 s gasAcu1.chrIX 5404622 44 - 20249479 AAGCCAGAGTGGCATCAATCTGCCTCAACCCCCCCTCCAG---ACTG i gasAcu1.chrIX I 3 I 5 s danRer6.chr1 4910918 43 - 59305620 GGGCCGACACGGTATTGCTGAGCTTGGACGCTTCACCTAACAG---- i danRer6.chr1 C 0 I 296 e felCat3.scaffold_149463 124799 744 + 235511 I e oryLat2.chr1 8937791 687 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I a score=58754.000000 s hg19.chr4_gl000194_random 53866 116 + 191469 GGGGTG-TTGGGGGGTGTGAGCTGGGGCTGGGGAGGGCAGAAGTATGCACCTACTGGGGTGGAGGGGACCCAAAACTCCCAATGGGAGCTGGCAGGAGGTCCTGGGAAGACGCCATG s panTro2.chr4_random 3237755 117 + 6711082 GGGGTGATGGGGGGGTGTGAGCTGGGGCTGGGGAGGGAAGAAGTATGCACCTACCGGGGTGGAGGGGACCCAAAACTCCCAATGGGAGCTGGCAGGAGGTCCTGGGAAGATGCCATG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11806674 116 + 72422247 GGGGTG-TTGGGGGGTGTGAGCTGGGGCTGGGGAGGGCAGAAGTATGCACCTACTGGGGTGCAGGGGACCCAAACCTCCCAATGGGAGCTGGCAGGAGGTCCTGGGAAGACTCCATG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3766703 116 - 110119387 GGGGTG-TTGGGGAGTATGAGCCGGGGCTGGGGAGGGCAGAAGTATGCACCTTCTGGGGTGCAAGGAACCCAAAACTCCCAATGGGAGCTGGCAGGAGGTCCTGGGAAGACTCCGTG i rheMac2.chr15 C 0 C 0 e felCat3.scaffold_149463 124799 744 + 235511 I e danRer6.chr1 4910961 296 - 59305620 I e oryLat2.chr1 8937791 687 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3024223 880 + 4425020 I e tetNig2.chr18 8736787 11 - 11077504 I e fr2.chrUn 158500924 0 - 400509343 C e gasAcu1.chrIX 5404666 5 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=6447.000000 s hg19.chr4_gl000194_random 53982 27 + 191469 AAAGG------------ATCCTACCAGGAAAGCGGCTCT-- s rheMac2.chr15 3766819 39 - 110119387 AAAGGACCCCTAAGGGAACCCCACCAGGAAAGTGGCTCT-- i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11806790 27 + 72422247 AAAGG------------ACCCCACCAGGAAAGCGGCTCT-- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3237872 27 + 6711082 AAAGG------------ATCCCACCAGGAAAGCGGCTCT-- i panTro2.chr4_random C 0 C 0 s felCat3.scaffold_149463 125543 27 + 235511 ------------GGCTGCCCCTGCCCCCAACCC--CCCTGA i felCat3.scaffold_149463 I 744 I 1560 e danRer6.chr1 4910961 296 - 59305620 I e oryLat2.chr1 8937791 687 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3024223 880 + 4425020 I e tetNig2.chr18 8736787 11 - 11077504 I e fr2.chrUn 158500924 0 - 400509343 C e gasAcu1.chrIX 5404666 5 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=35001.000000 s hg19.chr4_gl000194_random 54009 68 + 191469 AGGGCAGAGCATAAATTACGAGGGTCCTCCCAGGGAGCGCGGACCTGAGTGGGAATGAGTGACCCGCG s panTro2.chr4_random 3237899 68 + 6711082 AGGGCAGAGCATAAATTACGTGGGTCCTCCCAGGGAGCGCGGGCCTGAGTGGGAATGAGTGACCCGCG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11806817 68 + 72422247 AGGGCAGAGCATAAATTACGAGGGTCCTCCCAGGGAGCGCGGGCCTGAGTGGGAATGAGTGACCCGCG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3766858 66 - 110119387 AGGGCAGAGCACAAATTACGAGGGTCCTCCCAGGGAGCGCGGG--TGAGTGCGAATGAGTGACCCGCA i rheMac2.chr15 C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4910961 296 - 59305620 I e oryLat2.chr1 8937791 687 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3024223 880 + 4425020 I e tetNig2.chr18 8736787 11 - 11077504 I e fr2.chrUn 158500924 0 - 400509343 C e gasAcu1.chrIX 5404666 5 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=-1330.000000 s hg19.chr4_gl000194_random 54077 3 + 191469 ----------TGC------------ s panTro2.chr4_random 3237967 3 + 6711082 ----------TGC------------ i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11806885 3 + 72422247 ----------TGC------------ i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3766924 3 - 110119387 ----------TGC------------ i rheMac2.chr15 C 0 C 0 s speTri1.scaffold_151851 16893 25 - 17561 Tcctgggctctgcaagaccttgggc i speTri1.scaffold_151851 N 0 N 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4910961 296 - 59305620 I e oryLat2.chr1 8937791 687 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3024223 880 + 4425020 I e tetNig2.chr18 8736787 11 - 11077504 I e fr2.chrUn 158500924 0 - 400509343 C e gasAcu1.chrIX 5404666 5 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=251919.000000 s hg19.chr4_gl000194_random 54080 520 + 191469 AATCTCGACCCTGACAGGACAGGACTGG-CCTCAGCCGACCAGGCTCAGTTCTTTCCATTCCTGATATTTGACGGAAGGAGGCACCCAGTTCCTTGAAGGAACTGAGGGGCAGGGAAGGAAGAAAGGTACTTAGGCTCAGAAGGGGCCACCAGGCATCCGTTAACAAGGGAAACAAAAGGACGGCCCATCTATGCCTGTAGCCCAGGCGTAGGTCATACTTTCCACCAGAGGTGGGGACAGCACCCTCAGGGCAGCAGGGAATGGCCCTCTCTGGCCTCTCTGGCCCCGTGGCCTCCAGGAGCTCACCTTGTCTGAAGGAGCTTCCTCCCGGGAAGATGAGGTAGCACAGGGTGGGGTGAGACCACGTGGGCACAGGTCCCTGGCACGGGGAGGCCCCCGACCCATGACCTGCCCAGTGTCATGTCTATATCTGTGTGTTTAAGGCGTGCTTGCATGTTGTGTGTGGCCGCAGAGTCTCCCTCCCCTCTCAGCACCTGTGGGGGATGTGTGTGTGGAGA--TT s rheMac2.chr15 3766927 508 - 110119387 GATCTCGACCCGGGCAGGACAGGACTGGCCCTCAGCCCACCAGGCTCGGTTCTTTCCATTCCTGATGTTTAACGGAGGGAGGCCCCCAGTTCCTTGAAGGAGCTGAGGGGCAG----GGAAGAAAGGTACTTAGGCTCAGCAGGGGCCACTGGGCATCCGTTAACAAGGGAAACAAAAGGACGGCCCATCTATGCCTGGAGCCCGAGTGTAGGTCATACTTTCCACCAGAGGTGTGGACAGCACCCTCAGGGCAGCAGGGAACGGCCCTGCCTGGCTTCTCTGACCCTGTGGCCTCCTGGAGCTCACCTTGTCTGCAGGAGCTTCCTCCCGGGAAAATGAGGCAGCACAGGGTGGGGTGAGACCACGTGGGCACAGGTCCCTGGCACTGGGAGCCCCCC-ACCCATCACCTGCCCAGGGTCATGTCCATGTCTGTGTGTTTAAGGTGTGCTTGC-------GCGTGGCCCCAAAGTCTCCCTCCCCTCTCAGCACCTGCGGGGGATGTGTGTGGGTGG---TT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11806888 519 + 72422247 AATCTCGACCCTGGCAGGACAGGACCGG-CCTCAGCCGACCAGGCTCAGTTCGTTCCAGTCCTGATATTTGATGGAAGGAGTC-CCCAGTTCCTTGAAGGAACTGAGAGGCAGGGAAGGAAGAAAGGTACTTAGACTCAGAAGGGGCCACCGGGCATCTGTTAACAAGGGAAACAAAAGGATGGCCCATCTATGTCTCTAGCCCAGGCGTAGGTCATACTTTCCACCAGAGGTGTGGACAGCACCCTCAGGGCAGCAGGGAATGGCTCTGCCTGGCCTCTCTGGCCCTGTGGCCTCCTGGAGCTCACCTTGTCTGAAGGAGCTTCCTCCCGGGAAGATGAGGTAGCACAGGGTGGGGTGAGACCGTGTGCGCACAGGTCCCTGGCACTGGGAGCCCCCCGACCCATGACCTGCCCAGTGTCATGTTTATGTC--TCTGTTTAAGGCATGCTTGCGTGTTGCACGTGGCCCCAAAGTCTCCCTCCCCTCTCAGCACCTGCGGGGGATGTGTGTGGGGGGATGTT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3237970 520 + 6711082 AATCTCGACCCTGGCAGGACAGGACTAG-CCTCAGCCGACCAGGATCAGTTCTTTCCATTCCTGATATTTGACGGAAGGAGGCACCCAGTTCCTTGAAGGAACTGAGGGGCAGGGAAGGAAGAAAGGTACTTAGGCTCAGAAGGGGCCACCAGGCATCCGTTAACAAGGGAAACAAAAGGACGGCCCATCTATGCCTGTAGCCCAGGCGTAGGTCATACTTTCCACCAGAGGTGGGGACAGCACCCTCAGGGCAGCAGGGAATGGCCCTCCCTGGCCTCTCTGGCCCCATGGCCTCCAGGAGCTCACCTTGTCTGAAGGAGCTTCCTCCCGGGAAGATGAGGTAGCACAGGGTGGGATGAGACCACGTGGGCACAGGTCCCTGGCACTGGGAGGCCCCCGACCCATGACCTGCCCAGTGTCATGTCTATATCTGTGTGTTTAAGGCGTGCTTGCGTGTTGCGTGTGGCCGCAAAGTCTCCCTCCCCTCTCAGCACCTGTGGGGGATGTGTGTGTGGAGA--TT i panTro2.chr4_random C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4910961 296 - 59305620 I e oryLat2.chr1 8937791 687 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3024223 880 + 4425020 I e tetNig2.chr18 8736787 11 - 11077504 I e fr2.chrUn 158500924 0 - 400509343 C e gasAcu1.chrIX 5404666 5 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=-23831.000000 s hg19.chr4_gl000194_random 54600 70 + 191469 ---GGAGTGTTTATTGG-----------AGAGGGTCGCAGCGAGGAGGTGGACGGGGGCACCTGGGACTGCCTCAG-----------AGGCCCAG s panTro2.chr4_random 3238490 70 + 6711082 ---GGAGTGTTTATTGG-----------AGAGGGTCGCAGCGAGGAGGTGGACAGGGGCACCTGGGACTGCCTCAG-----------AGGCCCAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11807407 70 + 72422247 ---GGAGTGTTTATTGG-----------AGAGAGTCGCAGGGAGGAGGTGGACGGGGCCACCTGGGACTGCCTCAG-----------AAGCCCAT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3767435 81 - 110119387 ---GGGGTGTTTATTGGAGGCTGAGATCAGAGAGTAGCAGGGAGGCGGTGGACCGGGCCACCTGGGACTGCCTCAG-----------AGGCACAG i rheMac2.chr15 C 0 C 0 s gasAcu1.chrIX 5404671 62 - 20249479 ------------ATGGG-----------AGGAAAACAAAGTGAAGAGAGAGGGGCAGCAGCA-GGGTGAGTCTCTGTGAGT------GCGTG--- i gasAcu1.chrIX I 5 C 0 s oryLat2.chr1 8938478 37 - 39973033 ---------------------------------------------------GGACGATGG---GGCCTGGCCTCTG-GAGTTTGGCAGAGAC--- i oryLat2.chr1 I 687 C 0 s tetNig2.chr18 8736798 56 - 11077504 GGAGGGTCAATCATGGA-----------GG--------AACAACGAGGCGGAGGTAATCG-----TCCTGGACCCG------------GCCG--- i tetNig2.chr18 I 11 C 0 s fr2.chrUn 158500924 53 - 400509343 CACAGGAAGGACATTAA-----------CAGA----GGAGAAACGGGAAAGAGGAGAT-------------ACCTG-----------AGGTG--- i fr2.chrUn C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4910961 296 - 59305620 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3024223 880 + 4425020 I e calJac1.Contig1178 223464 2306 - 516707 I a score=69319.000000 s hg19.chr4_gl000194_random 54670 35 + 191469 -GCAGTACCTGAACTGGGCTGCATCGCGGCACAGCT s rheMac2.chr15 3767516 35 - 110119387 -GCAGCACCTGAACTGGGCTGCATCGCGGCACAGCT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11807477 35 + 72422247 -GCAGCACCTGAACTGGGCTGCTTCTCGGCACAGCT i ponAbe2.chrUn C 0 M 861 s panTro2.chr4_random 3238560 35 + 6711082 -GCAGTACCTGAACTGGGCTGCATCGCGGCACAGCT i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_27 3025103 35 + 4425020 -GCCCTACCTTATCTGCACATGGTCCCTGCACAGCT i xenTro2.scaffold_27 I 880 C 0 s gasAcu1.chrIX 5404733 35 - 20249479 TGT-GCACCTGAGCTGGGCCTGGTCCCTGCAGAGCT i gasAcu1.chrIX C 0 C 0 s oryLat2.chr1 8938515 35 - 39973033 GGC-GTACCTGAGCTGGGCTGGATCTCTGCACAGCT i oryLat2.chr1 C 0 C 0 s tetNig2.chr18 8736854 35 - 11077504 GTC-ATACCTGAGCTGCGCCTGATCTCTGCAGAGCT i tetNig2.chr18 C 0 C 0 s fr2.chrUn 158500977 35 - 400509343 CAG-ATACCTGAGCTGCGCTTGATCTCTGCAGAGCT i fr2.chrUn C 0 C 0 s danRer6.chr1 4911257 32 - 59305620 ----GTACCTGAGCTGCGGCTGGTCTCGACACTGCT i danRer6.chr1 I 296 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I a score=80464.000000 s hg19.chr4_gl000194_random 54705 46 + 191469 GCATGTTGGGCCGGTGTGAGAGCAGCTACAGCCGGGTCTGGGCTAT s panTro2.chr4_random 3238595 46 + 6711082 CCATGTTGGGCCGGTGTGAGAGCAGGTACAGCCGGGTCTGGGCTAC i panTro2.chr4_random C 0 C 0 s rheMac2.chr15 3767551 46 - 110119387 CCACGTTGGGCCGGTGTGAGCGCAGGTACAGCCGGGTCTGGGCGAC i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_27 3025138 46 + 4425020 CAACATTAGGTCTGTACGATCTATCATGCAGCCTGGTCTGGGCAAC i xenTro2.scaffold_27 C 0 C 0 s fr2.chrUn 158501012 46 - 400509343 CCATGTTGGGTCTGAGGGAGCGGAGGTAAAGTCTGGACTGAGCGAC i fr2.chrUn C 0 C 0 s tetNig2.chr18 8736889 46 - 11077504 CCATGTTGGGTCTGAGGGAGCGCAGGTGGAGTCTGGACTGAGCCAC i tetNig2.chr18 C 0 C 0 s oryLat2.chr1 8938550 46 - 39973033 CCATGTTTGGCCTGAGCGAGCGCAGATGAAGTCTGGACTGAACCAC i oryLat2.chr1 C 0 C 0 s gasAcu1.chrIX 5404768 46 - 20249479 CCATGTTGGGTCTGAGGGAGCGCAGGTAAAGTCTGGACTGAGTTAC i gasAcu1.chrIX C 0 C 0 s danRer6.chr1 4911289 46 - 59305620 CCATGTTGGGTCTGAGGGTCCGGTAATGCAGTCTAGATTGAGCCAC i danRer6.chr1 C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I e ponAbe2.chrUn 11807512 861 + 72422247 M a score=112975.000000 s hg19.chr4_gl000194_random 54751 120 + 191469 GTGCAGAGGTTCCTCCTTGTCCTT-GATGG-CCTCCTTCAGTGCCACCACGTTGTGTTCCTGATCTGTGATTTCCCGCAGCATCTG--CAGACA--GGACAGTGCCCCTTGGGCCTGTG-CCCCCAT s rheMac2.chr15 3767597 119 - 110119387 GCGCAGAGGGGCCTCCTTGTCCTT-GATGG-CCTGCTTCAGTGCCGCCACGTTGTGCTCCTGATCTGTGATTTCCCGCAGCGTCTG--CAGACA--GGACAGTG-CCCTTGGGCCTGTG-CCCTCAT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11808380 123 + 72422247 GTGCAGAGGTGCCTCCTTGTCCCTGGATGGCCCTGCCTCAGTGCCGCCACGTTGTGCTCCTGATCTGTGATTTCCTGCAGCGTCTG--CAGACA--GGACAGTGCCCCTTGAGCTTGTGCCCCCCAT i ponAbe2.chrUn M 861 C 0 s panTro2.chr4_random 3238641 120 + 6711082 GTGCAGAGGTGCCTCCTTGTCCTT-GATGG-CCTCCTTCAGTGCCACCACGTTGTGTTCCTGATCTGTGATTTCCCGCAGCATCTG--CAGACA--GGACTGTGCCCCTTGGGCCTGTG-CCCCCAT i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_27 3025184 122 + 4425020 CTTCAGCGGTGGAGACTTGTCATT-AATGG-CCTGCTTTAGAGCAGCAATGTTCTTCTCCTGACCTCCGATTTCCTCCAAGGTCTGTTTAAAGG--GGAAAAAGACACTCAGACATTAG-GCACTAT i xenTro2.scaffold_27 C 0 I 2091 s fr2.chrUn 158501058 91 - 400509343 TCTCAGCGGGGCCTCTTTGTTGTG-AACGG-CCTGTTCCAGAGACACAATGTTTGTCTCCTGGTCACCAATCTGCTCCAAAATCTG--CACACA-G------------------------------- i fr2.chrUn C 0 I 75 s tetNig2.chr18 8736935 91 - 11077504 CCTCAGCGGAGCCTCTTTGTGGTG-GATGG-CCTCTTCCAGAGCCACAAtgttcctctcctgctccccgATCTGCTCCAAAATCTG--CACGCA-G------------------------------- i tetNig2.chr18 C 0 I 1 s oryLat2.chr1 8938596 115 - 39973033 TCTCAGCGGAGCCTCTTTGAGGTG-GATGG-CCTTCTGCAGACCCACTATGTTCTTTTCCTGTTCTCCAATCTGCTGCAGGACCTG--TTCACAC--CACAAGGAC---TGAGCCTAAA-GCCGT-- i oryLat2.chr1 C 0 I 49 s gasAcu1.chrIX 5404814 90 - 20249479 TCTCAGTGGAGCCTCTTTGTTGTG-GATAG-CCTGCTGAATAGCCACGATGCTCTTCTCCTGAGCCACGATCTGCTCCAAGATCTG--CGCACA--------------------------------- i gasAcu1.chrIX C 0 I 45 s danRer6.chr1 4911335 87 - 59305620 TCTGAGCGGAGCCTCTTTATCATG-CACCG-CCTCCTGCAGTTGTGAGATATTCCTCTCCTGAGCCCCGATCTGCTCCAGAATCTA--AAG------------------------------------ i danRer6.chr1 C 0 I 1766 e felCat3.scaffold_149463 125570 1560 + 235511 I e papHam1.scaffold16121 37421 6409 + 55498 I e calJac1.Contig1178 223464 2306 - 516707 I a score=80279.000000 s hg19.chr4_gl000194_random 54871 171 + 191469 GCCCGGGCATATGGAATGTAGAGACCAGTCTGGTCCTACCCAGCT-------CCTGGG---GCTGTGTCCAGAGGGTGGTCCTGACCAGTG---GCCCTGGGGAGGCGTGGGTGAGGG-------GAACAATGTGCACGGGGCCCCCAGCGGGCTCTGG-AGAGTCAGGCAG--CCTGTTGTCTCTTAGCTCTG s rheMac2.chr15 3767716 170 - 110119387 GCCCGGGCATATGGAATGCCGATACCAGGCTGGTCCTGCCCAGGT-------CCTGGG---GCTGTGTCCAGACGGCAGTCCTGACCAGTG---GCCCCAAGGAGGCATGAATGA-AG-------GAACAATGTGCACGGGG-CCCCAGCGGGCTCTGGAAGAGTCAGGCAG--CCTGTTGCCCCTTAGCTCTG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11808503 171 + 72422247 GCCCGGGCATATGGAATGCCGAGACCAGGCTGGTCCTACCCAGGT-------CCTGGG---GCTGTGTCCAGAGGGCAGTCCTGACCAGTG---GCCCTGGGGAGGCGTGGATGAGGG-------GAACAATGTGCATGGGGCCCCCAGTGGGCTCTGG-AGAGTCAGGCAG--CCTGTTGTCCCTTAGCTCTG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3238761 171 + 6711082 GCCCGGGCATATGGAATGTGGAGACGAGTCTGGTCCTACCCAGGT-------CCTGGG---GCTGTGTCCAGAGGCTGGTCCTGACCAGTG---GCCCTGGGGAGGCGTGGATGAGGG-------GAACAATGTGCACGGGGCCCCCAGCGGGCTCTGG-AGAGTCAGGAAG--CCTGTTGTCTCTTAGTTCTG i panTro2.chr4_random C 0 C 0 s tetNig2.chr18 8737027 186 - 11077504 ---CGGA---ATTAAAAGCAGCAACGCAGGTGGTTCTCCTGTGGGATGAATACCTGGGTCAGCTTCATCTCCAGCTGGATCTTGGCCTCCGTCAGCTCCAGGCAGCGCTGGCTGAAGGCCTGCTCCACCCTGGAGCACTGGACCCTCAG-GTCCTCTGT-GGTGTCCTGCAGGATCTGCTCGGCCAGAGCCCTG i tetNig2.chr18 I 1 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4911422 1766 - 59305620 I e oryLat2.chr1 8938711 49 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3025306 2091 + 4425020 I e fr2.chrUn 158501149 75 - 400509343 I e gasAcu1.chrIX 5404904 45 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=58742.000000 s hg19.chr4_gl000194_random 55042 153 + 191469 GTCCAAGAACCCCCATCCTTGGTGGTCACCAGGACCCAAATCCTGCTCAAGGACTGGGGACTCAGAGGTGGTAAAGGCCATGCTGAGGCCCTAGAGTCA-GAGCCCTGCCTGCCAGGCCAGGACTCTTGGGGACCTCCCAGGCAGTCAATGCTC s rheMac2.chr15 3767886 133 - 110119387 GTCCAAGAACTACCATCTTTGGTGGTCACCAGGACCCGAACCCTGCTCAAGGACTGGGCACTCAGAGGCGGTAAAGGCCACGCTGAGACCCTAGA-TCA-GAGCCCTGCCTGCCAGGCCAGGACTCTCGGGGACC------------------- i rheMac2.chr15 C 0 I 15 s ponAbe2.chrUn 11808674 153 + 72422247 GTCCAAGAACCCCCATCCTTGGTGGTCACCAGGACCCTAATCCTGCTCAAGGACTGGGGACTCAGAGGTGGTAAAGGCCACGCTGAGACCCTAGAGTCA-GAGCCCTGCCTGCCAGGCCAGGACTCTTGGGGACCTCCCGGGCGGTCAGTGCTC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3238932 152 + 6711082 GTCCAAGAACCCCCATCCTTGGTGGTCACCAGGACCCAAATCCTGCTCAAGGACTGGGGACTCAGAGGTGGTAAAGGCCATGCTGAGGCCCTAGAGTCA-GAGCCTGCCCCTGCAGGCCAGGACTCTTGGGGACCTTCCAGGCAGTC-ATGCTC i panTro2.chr4_random C 0 C 0 s tetNig2.chr2 20895641 102 - 21591555 GTTTACTAACCC-----------GGCAACCAG---------------------CCGGCGGTTCA-AAGTGTTAATCTCAGCAAT-AAACCTGAGAACAATGAGCCTC---------------AGTGTTGGACACGACTTGAGCAATGAAAG--- i tetNig2.chr2 n 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4911422 1766 - 59305620 I e oryLat2.chr1 8938711 49 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3025306 2091 + 4425020 I e fr2.chrUn 158501149 75 - 400509343 I e gasAcu1.chrIX 5404904 45 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=19910.000000 s hg19.chr4_gl000194_random 55195 64 + 191469 CCCAGACCAGCTCCTGCCTCCATCCTCCCCAC----AGCTCCTCCTTCTCAGTCATGGGGGTTGCAAC s panTro2.chr4_random 3239084 64 + 6711082 CCCAGACCAGCTCCTGCCTCCTTCCTCCCCAG----AGCTCCTCCTGCTCAGTCATGGGGGTTGCAAC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11808827 51 + 72422247 CCCAGACTACCTCCTGCCTCCA-----------------TCCTCCTGCTCAGTCATGGGGGTGGCAAC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3768034 64 - 110119387 ACCAGACCTCCTGCTGCCTCCATCCTCCCCAC----AGCTCCTCCTGTTTAGTCATGGGGGTGGCAAC i rheMac2.chr15 I 15 C 0 s tetNig2.chr2 20895743 61 - 21591555 -------TGGTATCTGTTCGCATTCCTCTCGGTTGACACAACTTCTTTACAGTCAACagcacctctgc i tetNig2.chr2 C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4911422 1766 - 59305620 I e oryLat2.chr1 8938711 49 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3025306 2091 + 4425020 I e fr2.chrUn 158501149 75 - 400509343 I e gasAcu1.chrIX 5404904 45 - 20249479 I e calJac1.Contig1178 223464 2306 - 516707 I a score=44543.000000 s hg19.chr4_gl000194_random 55259 81 + 191469 ACACTGCGATCATACCCAGTGTCACCTGGTTTTACATAGGTTTACGGAGAGGTGACACT----TGCTTC---------TGGGGTCCCTCGGGAT s rheMac2.chr15 3768098 81 - 110119387 ACCCGTCCATCATACCCAGCTTCGCCTGGTTTTACACAGGTTTACGGAGAGGTGGCACT----TGCTTC---------TGGGGTCCCTCGGGGT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11808878 77 + 72422247 ACCCGCCGATCATACCTAGTGTCACCTGGTTTTACATAGGTTTCTGGCGAGGTGAC--------GCTTC---------TGGGGTCCCTCGGAAT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3239148 81 + 6711082 ACCCTGCGATCATACCCAGTGTCACCTGGTTTTACATAGGTTTACGGAGAGGTGACACT----TGCTTC---------TGGGGTCCCTCGGGAT i panTro2.chr4_random C 0 C 0 s calJac1.Contig1178 225770 75 - 516707 ------CCGCCACTCCCAATGTCATCTGGTTTTATGCAGATTGGAGGAGGACTGGCATC----TGCTTC---------TGGGGTCCCTCAGGGT i calJac1.Contig1178 I 2306 I 788 s tetNig2.chr2 20895804 85 - 21591555 -ctcctcctgaaAGCCCAGAGTCACCTGA--------AGGCCACAGACGCCCTAGAAATAAGCTGCTTCCATCAAAAGTTGGCCTCATCGTGAT i tetNig2.chr2 C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4911422 1766 - 59305620 I e oryLat2.chr1 8938711 49 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3025306 2091 + 4425020 I e fr2.chrUn 158501149 75 - 400509343 I e gasAcu1.chrIX 5404904 45 - 20249479 I a score=22834.000000 s hg19.chr4_gl000194_random 55340 54 + 191469 AAGTGGGACAGAGGAGAAAGGTGTT---------GAGGGCCCAGGC--CAGGTGATGAGAGGGGG s rheMac2.chr15 3768179 53 - 110119387 AAGTGGGGCAGAGGAGAGCGGTGCT---------GAAGGCCCAGGC--CAGGTGATGCGGGGGG- i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11808955 53 + 72422247 AAGTGGGGCAGAGGAGAAAGGTGTT---------GAGGGCCCAGGC--CAGGTGATGAGAGGGG- i ponAbe2.chrUn C 0 I 8 s panTro2.chr4_random 3239229 54 + 6711082 AAGTGGGACAGAGGAGAAAGGTGTT---------GTGGGCCCAGGC--CAGGTGATGAGAGGGGG i panTro2.chr4_random C 0 C 0 s tetNig2.chr2 20895889 51 - 21591555 AAGT--------------atgtgttttctaaaaagagGGTCCCGACAACAGCCCCTGAGGTAGAG i tetNig2.chr2 C 0 C 0 e felCat3.scaffold_149463 125570 1560 + 235511 I e danRer6.chr1 4911422 1766 - 59305620 I e oryLat2.chr1 8938711 49 - 39973033 I e papHam1.scaffold16121 37421 6409 + 55498 I e xenTro2.scaffold_27 3025306 2091 + 4425020 I e fr2.chrUn 158501149 75 - 400509343 I e gasAcu1.chrIX 5404904 45 - 20249479 I e calJac1.Contig1178 225845 788 - 516707 I a score=7445.000000 s hg19.chr4_gl000194_random 55394 31 + 191469 CAGAGTG---GTGGGCAGGCGC----CGGAGCCGTCTT s papHam1.Contig789918 745 23 + 855 CACAGTG---GTGGGCAGGCGC----GGGA-------- i papHam1.Contig789918 n 6409 n 6409 s rheMac2.chr15 3768232 31 - 110119387 CAGAGTG---GTGGGCAGGCGC----GGGAGCCGTCTT i rheMac2.chr15 C 0 C 0 s panTro2.chr4_random 3239283 31 + 6711082 CAGAGTG---GTGGGCAGGCGC----CGGAGCCGTCTT i panTro2.chr4_random C 0 C 0 s felCat3.scaffold_149463 127130 27 + 235511 CGGCTTGTACGCGGGCGGGCGT-----------GGCCT i felCat3.scaffold_149463 I 1560 I 6356 s tetNig2.chr2 20895940 30 - 21591555 ----GTG---AAGCTCAGATGCTGCCAGGACTTAGCT- i tetNig2.chr2 C 0 C 0 e danRer6.chr1 4911422 1766 - 59305620 I e oryLat2.chr1 8938711 49 - 39973033 I e xenTro2.scaffold_27 3025306 2091 + 4425020 I e fr2.chrUn 158501149 75 - 400509343 I e gasAcu1.chrIX 5404904 45 - 20249479 I e calJac1.Contig1178 225845 788 - 516707 I e ponAbe2.chrUn 11809008 8 + 72422247 I a score=-2959.000000 s hg19.chr4_gl000194_random 55425 35 + 191469 CGGGGTTCAGGGTGCCCCACCT-TGTGCAGGTGGTG s rheMac2.chr15 3768263 35 - 110119387 GGGGGTTCAGGGCGCCCCACCT-TGTGCAGGTGCTG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11809016 35 + 72422247 CGGGGTTCAGGGTGCCCCACCT-TGTGCAGGTGGTG i ponAbe2.chrUn I 8 C 0 s panTro2.chr4_random 3239314 35 + 6711082 CGGGGTTCAGGGTGCCCCACCT-TGTGCATGTGGTG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_27 3027397 17 + 4425020 ------------------ACCT-TTTTCAGGTGCAT i xenTro2.scaffold_27 I 2091 C 0 s fr2.chrUn 158501224 18 - 400509343 ----------------CTACC--TGAGCCAGTTTCA i fr2.chrUn I 75 I 1 s gasAcu1.chrIX 5404949 34 - 20249479 CGGCCTGCGTGTCGCTCCGCCTGTGTACCTGTCG-- i gasAcu1.chrIX I 45 I 9 s tetNig2.chr2 20895970 27 - 21591555 --GTAGAGAAGATACC-------TTAGCTAGGTGTG i tetNig2.chr2 C 0 I 1 s danRer6.chr1 4913188 15 - 59305620 ---------------------CCTGTGCCAGATGCA i danRer6.chr1 I 1766 I 1 e felCat3.scaffold_149463 127157 6356 + 235511 I e oryLat2.chr1 8938711 49 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 225845 788 - 516707 I a score=150044.000000 s hg19.chr4_gl000194_random 55460 119 + 191469 CTGCAGCTTGTGCCGCGCGTCCTCCAGTTCCTCACA-GCGGCGCCCGAAGGCCAGGTTCACGGCGTCACACTGGAGTCCCAGGTCCTCGGAGGTGTCGCGAAGGATGCAGT---------------------------CCACCAG-----------------------------------------CA s rheMac2.chr15 3768298 119 - 110119387 CTGCAGCTTGTGCCGCGCGTCCTCCAGCTCCTCGCA-GCGGCGCCCGAAGGCCAGGTTCACAGCGTCGCACTGCAGCCGCAGGTCCTCGGAGGTGTCGCGAAGGATGCAGT---------------------------CCACCAG-----------------------------------------CA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11809051 119 + 72422247 CTGCAGCTTGTGCCGCGCGTCCTCCAGCTCCTCACA-GCGGCGCCCGAAGGCCAGGTTCACGGCGTCGCACTGGAGCCGCAGGTCCTCGGAGGTGTCTCGAAGGATGCAGT---------------------------CCACCAG-----------------------------------------CA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3239349 119 + 6711082 CTGCAGCTTGTGCCACGCGTCCTCCAGTTCCTCACA-GCGGCGCTCGAAGGCCAGGTTCACGGCGTCACACTGGAGTCCCAGGTCCTCGGAGGTGTCGTGAAGGATGCAGT---------------------------CCACCAG-----------------------------------------CA i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_27 3027414 119 + 4425020 CTCCAGCTTCTGTTTCGCATCTTCCACCTCCCTGCA-TCGCTTTTCGAAGTCTACGGCAATGGCGGCAGACTGAGCTTCTAAGTCTTCACTGATGTCTTGAAGGATGCTGT---------------------------CTATCAG-----------------------------------------TG i xenTro2.scaffold_27 C 0 C 0 s tetNig2.chr2 20895998 118 - 21591555 TTGGAGGCTGTTCTTAGCAT-CAGCAGTTTCTGAGGTGCGGTTGGAGAAGGCCACGTTGACGGTGTTGAACTGGTTCCACATCTCTCCGCAGGTGGTGTTCATGAGGATTT---------------------------CCATCT------------------------------------------CG i tetNig2.chr2 I 1 I 1 s fr2.chrUn 158501243 187 - 400509343 CTCCAGCTGAGTCTtggcctccaccagctcctcaca-GCGCCGGCTGAAGGCCTGGTCCACTCTGGAGCACTGGACTCTCAGATCCTCTGTGGTGTCCTGCAAGATGCCCTCAGCCAGAGCCCTGACGCCAATAAACGCCATCAGAACCACACAGCAACATTGAAGCCTGGCGCGGCACGTTTGTTCG i fr2.chrUn I 1 I 1 s gasAcu1.chrIX 5404992 119 - 20249479 CTCCAGCTGGGTCTTGGCCTCTATCATCTCTGCACA-GCGCTGACTCAAAGCTCGGTCCACGCTGGAGCACTGGACTCTCAGATCGTGAGAGGTGTCCTGCAGCACTCGCT---------------------------CCACCAG-----------------------------------------CA i gasAcu1.chrIX I 9 I 293 s oryLat2.chr1 8938760 119 - 39973033 CTGCAGCTCAGTCTTTGCTTCCAACAGCTCCTGGCA-GCGCTGGCTGAAAGCTCCATCCACCGTGGAACGTTGGTTAATAAGGTCTTCAGTGGTTTCACGCAGCATTTCCT---------------------------CCACAAG-----------------------------------------CG i oryLat2.chr1 I 49 I 63 s danRer6.chr1 4913204 119 - 59305620 CTCCAGCTGTGTTTTGGCCTGGCTCATCTCCACGCA-GCGCTGAGTGAAGGCTCGATCCACAGCGTCACACTGCGCACGCAGGTCCTCCGTGGTCTCCTGCAGGACCCGCT---------------------------CAGTCAGA----------------------------------------C- i danRer6.chr1 I 1 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 225845 788 - 516707 I a score=52565.000000 s hg19.chr4_gl000194_random 55579 124 + 191469 CCCACAGGTTGGCCGAGTCCAGGCGCTCGCGCTGGG----CGTGGCACAG--ATTGTCCTGTGTGAACTTGGTCCGGGTCTCTGGGGTGGAGGCGCTGCGGGGCTGGGGACAGCCAGGAGAGGGTCAGGG s rheMac2.chr15 3768417 123 - 110119387 CCCGCAGGTTGGCCGAGGCCAGGCGCTCGCGCTGGG----CGCGGCACAG--ATTGTCCTGCGTGAACTTGGCCCAGGTCTCCGGGGTGGAGGCGCTGCGGGTTGGGGGACAGCCAGGGGATGGCG-GGG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11809170 124 + 72422247 CCCGCAGGTTGGCCGAGGCCAGGCGCTCGCGCTGGG----CGCGGCACAG--ATTGTCCTGCGTGAACTTGGCCCAGGTCTCTGGGGTGGAGGCGCTGCGGGGCGGGGGACAGCCAGGAGAGGGTCGGGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3239468 121 + 6711082 CCCACAGGTTGGCCGAGTCCAGGCGCTCGCGCTGGG----CGCGGCACAG--ATTGTCCTGTGTGAACTTGGTCCGGGTCTCTGGGGTGGAGGCGCTGCGGGGCAGGGGACAGCCAGGAGAGGGTCA--- i panTro2.chr4_random C 0 I 2189 s xenTro2.scaffold_27 3027533 92 + 4425020 AACGCAGGTTAATGGAGGCCATTCTCTCTCGTTCTG----CTTTATATAT--GTTTTCATGGGTATACTGAGCCCAAGACTCTGGAGTGGAAGTGCTG-------------------------------- i xenTro2.scaffold_27 C 0 I 1994 s tetNig2.chr2 20896117 79 - 21591555 CCCTCAGTTTCTGGGAGGCGGCGCGTTCGCTCTGCG----AGCGCAGGAT--GTTGTCATCCGTGAACCTCGACCACGACTCTGG--------------------------------------------- i tetNig2.chr2 I 1 n 1 s fr2.chrUn 158501431 105 - 400509343 ACCTGAGACTTTGGGTGGTCTGATGTTCGTGCT--G----AGCCTTGGACAAGTTGACCTGCGTGAACTCTGCCCA------------GGATGCGCTGT-------TGCACAACCTGCAAAAGGACAGAG i fr2.chrUn I 1 I 44 s gasAcu1.chrV 9108981 122 - 12251397 CCCTCAGCTTCTGGGAGGCCGCCCGCTGGCTCTGGG----AGAGCAGGAT--GTTGTCGTCGGTGAACTTGGACCACGAGTCCGGTAGAGAGAGCCTGACGT--GGTGAAAAGAACGGCATTTGGCAGTG i gasAcu1.chrV n 293 I 18 s oryLat2.chr1 8938942 96 - 39973033 ACCTGAGCCTTCTGGACGCC-TCCTCTTCCTGTGCGGCCTGGAGCAG-----GTTGTCCTGTGTGAACTTTGTCCATGTGGTTGGGTTGCAGACTCTGCAGG---------------------------- i oryLat2.chr1 I 63 I 14 s danRer6.chr1 4913323 96 - 59305620 GCCTCAGGGCCTGACTCGCCGTCTCCTCTCTTTCCG----CCAGCCGCAG--GTTATCCACTGTGAACTTACGCCAGACCTCCTCATCACACACCCTGCAGA---------------------------- i danRer6.chr1 C 0 I 1459 e felCat3.scaffold_149463 127157 6356 + 235511 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 225845 788 - 516707 I a score=12444.000000 s hg19.chr4_gl000194_random 55703 56 + 191469 AGGCTATGCCAGTGGC-------TGGGGGCCCTGCCGCG------------------------------CCCCCATTCCCTGTCTGCACCCCA s panTro2.chr4_random 3241778 56 + 6711082 AGGCTCTGCCAAATGC-------TGGGGGCCCTGCCACG------------------------------CCCCCATTCCCTGTCTGTGCCCCA i panTro2.chr4_random I 2189 C 0 s ponAbe2.chrUn 11809294 86 + 72422247 AGGCTCTGCCGAAGGC-------TgggggccctgccgcgcccccgccgcgcccccATGCCCTGTTCGCACCCCCATGCCCTGTCCGCACCCCA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3768540 56 - 110119387 AGGCTCTGCCAAAGGC-------CGGGGGTCCTGCCGCG------------------------------CCCCCATGCCTTGTCCGCGCCCCG i rheMac2.chr15 C 0 C 0 s fr2.chrUn 204432505 59 + 400509343 ----AACATCAGAACCGCCGGCACGGTTCTGTTGACAGG------------------------------TGCTCCCGTGCTGGTTTAAACAAA i fr2.chrUn n 44 I 20 s gasAcu1.chrV 9109121 54 - 12251397 ATACAATGTCAGTATC-------TAGGTGTATTGGTTGG------------------------------TCCACCA--CCTAATTTCACCCTA i gasAcu1.chrV I 18 n 18 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e tetNig2.chr2 20896196 1 - 21591555 I e calJac1.Contig1178 225845 788 - 516707 I a score=130822.000000 s hg19.chr4_gl000194_random 55759 277 + 191469 TGCTCCTGGAGGAACTGCATGGACTCCAATGCACCCCGTGCAGACTCACAAAGCCCAGTCCCCCAAGCTCCCTGCCTCCGAGTGCCCCCC-----GCCCACAAC----------TCCCCTGAGTCCACCCACACCCTACCCACCCCGGG------CACTTAGTCCCCTCCTGCCCCCGCGACCCCGTTCCCAGCACCGCTGCC--CCCAAGGCCCCCTCTGCAGCACCTCTGTCCCCCGCAGCCCCCCTTCCCTAGTACCCAGCGCCCGCGTCCGCTTCTCGCACCCAGGAGTTTGCTAT s panTro2.chr4_random 3241834 277 + 6711082 TGCTCCTGGAGGAACTGCATGGACTCCAATGCACCCCGTGCAGAGCCACGAAGCCCAGTCCCCCAAGTTGCCTGCCTCCGAGTGCCCCCC-----GCCCACAAC----------TCCCCTGAGTCCTCCCACACCCTACCCACCCCGGG------CACTTAGTCCCCTCCTGCCCCCGCAACCCCGTTCCCAGCACCGCTGCC--CCCGAGGCCCCCTCTGCAGCACCTCCGTCCCCCACAGCCTCCCTTCCCTAGTACCCAGCGCCCGCGTCCGCTTCTCGCACCCAGGAGTTTGCCGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11809380 277 + 72422247 TGCTCCTGGAGGACCTGCATGGACTCCGATGCACCCCGTGCCGCCCCACGAAGCCCAGTTCCCCAGGCTCCCTGCCCCCGAGTGCCCCCC-----GCCCACAAC----------TCCCCTGAGTCCCCCCACACCCTACCCACCCCGGG------CACTTAGTTCCCTCGTGCCCCCGCGACCTCGTTCCCAACACCGCCGCC--CCCGAGGCCCCCTCTGCAGCACCTCCGGCCCCCGCAGCCCCCCTTCCCTAGTACCCAGCGCCCGCGTCCTCTTTTCGCATCCAGGAGTTTGCGGC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3768596 278 - 110119387 TGCTCCTGGAGGACCCGCATGGACTCCGATGCAGCCCGTGCCGCCCCACGAAGCCCAGTCCCCCAGGCTCCCTGTCCCCGAGTGCCCCCC----GGCCCACAAC----------TCCCCTGAGTCCCCCCACACCCTCCCCACTTCGGG------CGCTTAGTCCCCTCGCGTCCCCGCGATCCCGTTCCCAGCACCGCCGCC--CCCGAGGCCGCCTCTGCAGCACCTCCGGCCCCCGAAGCCCCCCTTCCCTAGTACCCGGCGCCCGGGTCCCCTCCCTGCGCCCGGGAGTTTGCTGC i rheMac2.chr15 C 0 C 0 s fr2.chrUn 204432584 281 + 400509343 --GGCGTGAGGTGATGAAACGGATCCCCGGGGATCCCGT-----CTCATAAAACTCTACTCACGAGGGGTCCAGCCTCTCGATGCCTCGGTAGAAGCCGATACCGTCGGACGTGTTCCTCAGGTGGTGACACCTGTCGTCTATCCTGTGGGCCGCCGCCTTGTCGCTCAGGTCCTTCTCCAGCTCGTGTTGGGCGCCTCGGTTGGACCTGCGCCGCCGCGTTAGAAACACAAACCCTCAGAGCTCTGAACCCtcagaactttaaaccc---tccgTTCCTCGCGTTC---------CCAC i fr2.chrUn I 20 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e tetNig2.chr2 20896196 1 - 21591555 I e gasAcu1.chrV 9109175 18 - 12251397 I e calJac1.Contig1178 225845 788 - 516707 I a score=15985.000000 s hg19.chr4_gl000194_random 56036 40 + 191469 GCTCAAGTGG-----GCGGTGT------TCGTGCTCCCTCTG--CTGGCCTTG s panTro2.chr4_random 3242111 40 + 6711082 GCTCAAGTGG-----GCGGTGG------TCGCGCTCCCTCTG--CTGGCCTTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11809657 40 + 72422247 GCTCAAGTGG-----GCGGTGG------TCGCGCTCCCTCTG--CTGGCCTTG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3768874 40 - 110119387 GCTCCAGTGG-----GCGGTGG------TCGCGCGCCCTCTG--CTGGCCGTG i rheMac2.chr15 C 0 C 0 s tetNig2.chr18 8737213 31 - 11077504 ---------------GCGCCGA-------CAAACGCCGTCAGAACCACCTTTG i tetNig2.chr18 C 0 I 2 s fr2.chrUn 204432865 53 + 400509343 ACTCACGCCAGCTGAGCGGCGGCTCTGTCCAGGTGCCGCCTCATCCGGTCCTG i fr2.chrUn C 0 n 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e gasAcu1.chrV 9109175 18 - 12251397 I e calJac1.Contig1178 225845 788 - 516707 I a score=-8749.000000 s hg19.chr4_gl000194_random 56076 40 + 191469 GGTGGAAATGCAATCC------------------TGC----CGGTGCCTGG-GGCTGACCGCA s panTro2.chr4_random 3242151 40 + 6711082 GGTGGAAATGCAATCC------------------TGC----CGGCGCCTGG-GGCTGACCCCA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11809697 40 + 72422247 GGCGGAAACGCAATAC------------------TGC----CGGCCCATGG-GTCTGACCCCA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3768914 39 - 110119387 GACGGAAACGCAGTCC------------------TGC----CGGCGCCTGG-GGCTGACC-CA i rheMac2.chr15 C 0 C 0 s eriEur1.scaffold_143236 5424 24 + 8649 GGCG----------CC------------------CGC----CTCTCCCCAGAGGCA------- i eriEur1.scaffold_143236 N 0 C 0 s myoLuc1.scaffold_184806 22078 44 - 30575 CATTGAGTTTC---CCGGGCTTCCCCTGACCCCCCAC----CTCCCACCCT------------ i myoLuc1.scaffold_184806 N 0 N 0 s tetNig2.chr18 8737246 38 - 11077504 ----GGGACATGTTCC------------------CCCTTTGCGGCGTGTTC-GGCTGCGCC-- i tetNig2.chr18 I 2 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e fr2.chrUn 204432918 0 + 400509343 I e gasAcu1.chrV 9109175 18 - 12251397 I e calJac1.Contig1178 225845 788 - 516707 I a score=17864.000000 s hg19.chr4_gl000194_random 56116 30 + 191469 CCCCACC-CTGTCCTGTCTACGGGCAACCAG s rheMac2.chr15 3768953 30 - 110119387 CCCCACC-CTGTCCGGTCTCCCCGCGACCTG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11809737 30 + 72422247 CCCCACC-CTGTCCTGTCTGCCGGCAACCAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3242191 30 + 6711082 CCCCACC-CTGTCCTGTCTACGGGCAACCAG i panTro2.chr4_random C 0 C 0 s calJac1.Contig1178 226633 30 - 516707 CCCCACC-CTGTCCGGTCTCCGGGGGACTGG i calJac1.Contig1178 I 788 I 2302 s eriEur1.scaffold_143236 5448 24 + 8649 CCCAACCACTCCCCTAGCTGTGTG------- i eriEur1.scaffold_143236 C 0 C 0 s tetNig2.chr18 8737284 27 - 11077504 CGCCTAC-CTG---AGGCTCTGGGTGGTCTG i tetNig2.chr18 C 0 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e fr2.chrUn 204432918 0 + 400509343 I e gasAcu1.chrV 9109175 18 - 12251397 I a score=16635.000000 s hg19.chr4_gl000194_random 56146 42 + 191469 GCTGTGCACGCGCTGGGCACTTGAGGAGGTCTTGCATGCTTT---- s rheMac2.chr15 3768983 42 - 110119387 GCTGTGCACGCGCTGGGCACTTGAGGGGGTCTTGCTCGCTTG---- i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11809767 42 + 72422247 GCTGTGCTTGCGCTGGGCACTTGAGGAGGTCTTGCACGCTTG---- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3242221 42 + 6711082 GCTGTGCACGCGCTGGGCACTTGAGGAGGTCTTGCTCGCTTA---- i panTro2.chr4_random C 0 C 0 s eriEur1.scaffold_143236 5472 23 + 8649 ---GCGCAC--------CCCTTGA--------TCCACGCCTC---- i eriEur1.scaffold_143236 C 0 I 1278 s tetNig2.chr18 8737311 41 - 11077504 ---ACGCTCCTGCTGAGC-CTTGGACAGGT-TGGCCTGTGTGAACT i tetNig2.chr18 C 0 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e fr2.chrUn 204432918 0 + 400509343 I e gasAcu1.chrV 9109175 18 - 12251397 I e calJac1.Contig1178 226663 2302 - 516707 I a score=36536.000000 s hg19.chr4_gl000194_random 56188 88 + 191469 CTCATGCCAGGGGCAGACAGTTGCCCAAGTGCCCTCGGGGGCGAGGGCCTCTGGGCCAGGCTG---GGGGAAGCAGTGCCGCTGGGGCCCC--------- s panTro2.chr4_random 3242263 88 + 6711082 CTCATGCCAGGGGCAGACAGTTGCCCAAGTGCCCTCTGGGGCGAGGGCCTCTGGGCCAGGCTG---GGGGAAGGAGCCCCGCTGGGGCCCC--------- i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11809809 88 + 72422247 CTCATGCCAGGGGCAGACAGTTGCCCAAGTGCTCTCGGGGGCGAGGGCCTTCGGACCAGGCTG---GTGGAAGCAGCGCCGCTGGGGCCCC--------- i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3769025 87 - 110119387 CTCATGCCC-GGGTAGAAAGTTTCCCAAGTACCCTCGGGGGCGAGGGCCTCTGGGCCAGGCTG---GGGGAAGCAGCCCCGCTGAGGCCCC--------- i rheMac2.chr15 C 0 C 0 s tetNig2.chr18 8737352 62 - 11077504 --------------------CTGCCCAG--------------GATGTCCTGTCGCACAGCCTGCAAGGGGACGGAG----Gctaacaccacacacacaca i tetNig2.chr18 C 0 C 0 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e oryLat2.chr1 8939038 14 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e fr2.chrUn 204432918 0 + 400509343 I e gasAcu1.chrV 9109175 18 - 12251397 I e calJac1.Contig1178 226663 2302 - 516707 I a score=18379.000000 s hg19.chr4_gl000194_random 56276 43 + 191469 CAGGCAGAG--GGAGGCGAGACCACAGCCAGGGCAAGCACGGGG-C s panTro2.chr4_random 3242351 44 + 6711082 CAGGCAGAG--GGAGGCGAGACCACAGCCAGGGCAAGCGCGGGGGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11809897 44 + 72422247 CAGGCAGAG--GGAGGCGAGACCACAGCCAGGGCAAGCGCAGGGGC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3769112 44 - 110119387 CAGGTGGAG--GGAGGCAAGTCCACAGCCAGGGCAAGCGCGGGGTC i rheMac2.chr15 C 0 C 0 s oryLat2.chr1 8939052 44 - 39973033 CAAGTAAAG--GGAAGTAAACATTTACGGCAGGTCTGCTCCCCCTC i oryLat2.chr1 I 14 C 0 s tetNig2.chr18 8737414 46 - 11077504 cacacagaggcgcacgtgcacacactcactggtCCTGCGTGCTGGC i tetNig2.chr18 C 0 C 0 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4913419 1459 - 59305620 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3027625 1994 + 4425020 I e fr2.chrUn 204432918 0 + 400509343 I e gasAcu1.chrV 9109175 18 - 12251397 I e calJac1.Contig1178 226663 2302 - 516707 I a score=166807.000000 s hg19.chr4_gl000194_random 56319 168 + 191469 AGAGCTGG-GGCCCCCCTCTCTTGGAAGGTGGTGGAGTGCCGGATG--AGCCTGCACCTCGGTGCTCTGGCTGTGGTGGCGCCC-----GCAAGTCTTGTCGAGGTTGTAGGCCTCCACCTTGTCCGACCAGTCCATCTCGCAG-ATCTCCATGTGCTCTCAGTTCAGTCTG---GGGCG---- s panTro2.chr4_random 3242395 167 + 6711082 AGAGCTGG-C-CCCCCCTCTCTTGGAAGGTGGTAGAGTGCCAGATG--AGTCTACACCTCGGTGCTCTGGCTGTGGTGGCGCCC-----GCAGGTCTTGTCGAGGTTGTAGGCCTCCACCTTGTCCGACCAGTGCATCTTGCAG-ATCTCCGTGTGCTCCCGGTTCAGTCTG---GGGCG---- i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11809941 139 + 72422247 AGAGCTGG-GGCCCACCTCTCTTGGAAGGTGGTGGAGTGTTTTTTGTAATCGTGCACCTCGGTGCTCTGGCTGTGGTGGCGCCCTTTTTGTAA---TGGTCGATGTTGTAGGCCTCCACC-TGTCCGACCAGTCCATCTCGCAG---------------------------------------- i ponAbe2.chrUn C 0 M 147 s rheMac2.chr15 3769156 167 - 110119387 AGAGCTGG-GGCCCACCTCTCTTGGAAGGCGGTGGAGTG-AGGATG--AGCCTGCACCTGGGTGCTCTGGCTGTGGTAGCGCCC-----GCAGGTCTCATCGATGTTGTAGGCCTCCACCTTGTCTGACCAGTCCATCTCGCAG-GTCTCCTTGCGCTCCCGGTTCAGTCTG---GGGCG---- i rheMac2.chr15 C 0 C 0 s tetNig2.chr18 8737460 133 - 11077504 GGAGCTGG----------------------------------GGTG--GTGCTGTGTGTCCAGGCTGGTGTTGCTGTACCTCCC-----GCCGTGCTGGTCCAGGCTGTAGGCCTGCTGTTTATCCGACCAGTCCAGCTCCAGC-GTCTGCTGGGCCTCCCGGTTCAGCCTG-----ACA---- i tetNig2.chr18 C 0 I 4 s oryLat2.chr1 8939096 158 - 39973033 A--------GACTCACTGCTCATGATTGGCGGCGGAGCT-GGGATG--AAGCTGAGTGTCAGGACTCCTGTTGCTGTGTCCGCC-----GCCGCGCTCGTCCAGGTTGTAAGCCTCCTGTTTATCAGACCAGTCCATCTCTAGC-ACCTGCTTGGCGTCCATGTTCCTCcta-----aca---- i oryLat2.chr1 C 0 I 2 s danRer6.chr1 4914878 165 - 59305620 -AGGTTTGGTACGCACTGATCTTGAAGCACTGCTGAACT-GGGATG--CCGCTGTGTGTCGGTGCTCCTGTTGCTGAAGCGTCC-----ACAGTGGTCATCCAGACTGTACGCCTGCTGTTTATCAGACCAGTCCAACTCAAGA-GTGTGTTTCACCTCCCGGTTCAGCCTG-----GTG---- i danRer6.chr1 I 1459 I 1170 s gasAcu1.chrIX 5405404 153 - 20249479 ---------GACTCACTGGTCCTGCACGGTGGCCGAGCT-GGGGTG--GTGCCGCGTGTCGGGGCTCATGTTACTGAATCCTCC-----ACTGCGGCCATCAAAGTCGCAGGCCTGATACTTATCAGACCAGTCCAACTCTAAC-CTCTGCTTAACGTCTCTGTTCATCCT------------- i gasAcu1.chrIX I 293 I 124 s fr2.chrUn 158501580 157 - 400509343 ---------gactcactgcTCTTGCATGCTGGCTGAGCC-GGGGTG--GTGCTGTGTATCCAGGCTCATGTTGCTGTATCCCCC-----GCCGCGCTCATCCAGGCCGTAGGCCTGCTGCTTATCGGACCAGTCCAGCTCCAAC-GTCTGCTTGGCCTCTCGGTTCATCCTG-----ACG---- i fr2.chrUn I 44 I 4 s xenTro2.scaffold_27 3029619 148 + 4425020 ---------------CTTGTCTTCATATTTAGAGGAGTT-GCGATG--AAACTGGATGTCGGTGCTCTGGTTGTTGTATCTTCC-----ACATTTGTCATCAAACTCATAGGCTTCCACCTTATCCGAATAGTCCATCTC-CAGGTTTTCCTTAGCATCTCGATTCTGCCTG------------ i xenTro2.scaffold_27 I 1994 I 1069 s petMar1.Contig11044 4523 174 - 20109 AGGGAGGG-GCCTCACTTCTCGTGCGCACTGGCGGCGTG-CGCGTG--CCGCGCGGCGTCTGCCGATTGGTTGTTGAGGTGCCC-----GCTCGCGACGTCCGCCGCGTGCGCCTCGCGCTTGTCCGACCAGTCCGTCTCCAGG-TCCTGCTTCGCGTCGCGGTTCAagctgcgggggtggggg i petMar1.Contig11044 N 0 C 0 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 226663 2302 - 516707 I a score=341.000000 s hg19.chr4_gl000194_random 56487 43 + 191469 GGGTGGGGCAGGG--CCTTGGTG-TGTGGCCAGGGAGGGCCCCGCT s rheMac2.chr15 3769323 43 - 110119387 AGGTGGGGCAAGG--CCTTGGTA-TGTGCCCAGGGAGGGCCCTGCT i rheMac2.chr15 C 0 C 0 s panTro2.chr4_random 3242562 43 + 6711082 GGGTGGGGCAGGG--CATTGGTG-TGTGGCCAGGGAGGGCCCCGCC i panTro2.chr4_random C 0 C 0 s tetNig2.chr18 8737597 20 - 11077504 ---TGGGAAAGCGCTCACCGGCT----------------------- i tetNig2.chr18 I 4 C 0 s fr2.chrUn 158501741 43 - 400509343 ---TGAAGAAGCAACCGTTGATCGAAAGGACGCGATGTGGCGCGCT i fr2.chrUn I 4 C 0 s petMar1.Contig11044 4697 36 - 20109 gggtgaggagggg-----tggga-gggggtgagaaggggtgg---- i petMar1.Contig11044 C 0 I 4681 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4915043 1170 - 59305620 I e oryLat2.chr1 8939254 2 - 39973033 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3029767 1069 + 4425020 I e gasAcu1.chrIX 5405557 124 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I e ponAbe2.chrUn 11810080 147 + 72422247 M a score=21721.000000 s hg19.chr4_gl000194_random 56530 102 + 191469 GGGGACCCTCCATGCTGCAGGCTAGGACTTCATGCCCGCTTCAGGAGGGAGC----TCTGGGCC-------------GGCTGTCCTCGTGCTCAGCAGTGACCAAGAGCTGCCGCCCAT s rheMac2.chr15 3769366 113 - 110119387 GGGGACTGTCCCTGCTGCAGGCTGGGCCCCAGTGCCCGCTTCAGGAGGGAAC----TCTGGGCCAGCC--CCTCCTGGGCAGCCCTCATGCTCAGCAGTGACCAGGAGCAGCCGCCCAG i rheMac2.chr15 C 0 C 0 s panTro2.chr4_random 3242605 102 + 6711082 GGGGACCCTCCATGCTGCAGGCTAGGCCTTCATGCCCGCTTCAGGAGGGAGC----TCTGGGCC-------------GGCTGTCCTCGTGCTCAGCAGTGACCAAGAGCTGCCGCCCAT i panTro2.chr4_random C 0 C 0 s tetNig2.chr18 8737617 103 - 11077504 --GGAATCCCC-----GCaggctcacctttga--cctgttt-------gAGCCTCACCTGATCTGATCGACCACCTGAGCCGCGgttgtcctcagcagagcctggacGCTCCGGATCAG i tetNig2.chr18 C 0 C 0 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4915043 1170 - 59305620 I e oryLat2.chr1 8939254 2 - 39973033 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3029767 1069 + 4425020 I e fr2.chrUn 158501784 0 - 400509343 C e gasAcu1.chrIX 5405557 124 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I e ponAbe2.chrUn 11810080 147 + 72422247 M a score=38060.000000 s hg19.chr4_gl000194_random 56632 153 + 191469 GCTGGGAGGCTGCAGAGCAGTTGTGGCACTGGGCTTTGGCCACTCAAACTCAGGCTGGTCCGGAACCTCCCCCACCCAGCCCTGTGCTCCCACTGTGACCTGGGACAGCCCCTGCCGGCTCTGAGCTTCAGGGTCCTGTCGTTCAATGCCTTG s rheMac2.chr15 3769479 149 - 110119387 ACTGGGAGGCTGCAGAGCAGACGTGGGACTGGGCTCTGGCCACTCAACCTCAGGCTGGGCCGGAACCTCCCCCACCCAGCCCTGCGCTCCCACTGTGACCTGGGGCAGCCCCTGCC----CTGGGCCTCAGGGTCCTGTCGTTCAATGCCTTG i rheMac2.chr15 C 0 C 0 s panTro2.chr4_random 3242707 153 + 6711082 GCTGGGAAGCTGCAGATCAGTTGTGGCACTGGGCTTTGGCCACTCAAACTCAGGCTGGGCCGGAACCTCCCCCACCCAGCCCTGTGCTCCCACTGTGACCTGGGACAGCCCCTGCCGGCTCTGAGCTTCAGGGTCCTGTCTTTCAATGCCTTG i panTro2.chr4_random C 0 C 0 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4915043 1170 - 59305620 I e oryLat2.chr1 8939254 2 - 39973033 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3029767 1069 + 4425020 I e tetNig2.chr18 8737720 0 - 11077504 C e fr2.chrUn 158501784 0 - 400509343 C e gasAcu1.chrIX 5405557 124 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I e ponAbe2.chrUn 11810080 147 + 72422247 M a score=17415.000000 s hg19.chr4_gl000194_random 56785 41 + 191469 CCCCAGGACCAGCCGTGGGTGGGGT---CAGG--AGTCATCCCTTG s panTro2.chr4_random 3242860 41 + 6711082 CCCCAGGACCAGCCGTGGGTGGGGT---CAGG--AGTCATCCCTTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11810228 39 + 72422247 CCCCAGGACCAACCGT-GGTGGGTT---CAGG--AG-CATCCCTTG i ponAbe2.chrUn M 147 C 0 s rheMac2.chr15 3769628 41 - 110119387 CCCCAGGACCAGCCGTGGGTGGGGT---CAGG--AGTCATCCCTTG i rheMac2.chr15 C 0 C 0 s oryLat2.chr1 8939256 37 - 39973033 ---------cacacacagatgAAATGTACAGGGAAGCCAGCAGCTG i oryLat2.chr1 I 2 I 5 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4915043 1170 - 59305620 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3029767 1069 + 4425020 I e tetNig2.chr18 8737720 0 - 11077504 C e fr2.chrUn 158501784 0 - 400509343 C e gasAcu1.chrIX 5405557 124 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I a score=102999.000000 s hg19.chr4_gl000194_random 56826 101 + 191469 GGCAGCCCTCG--------ACCCACCAGATCTGGCTCACTGCTTGCATGATGGCTCTCTTCAGCAGCTCCTGAATGTTCCGGATGAGCTCAGCTTCCTGAGGGAGGAGA s rheMac2.chr15 3769669 101 - 110119387 GGCAGCCCTCG--------ACCCACCGGATCTGGCTCACAGCTTGCATGATGGTTCTCTTCAGCAGCTCCTGAATGTTCCGGATGAGCTCGGCTTCCTGAGGAAGGAGA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11810267 100 + 72422247 GGCAGCCCTTT--------ACCCACCGGATCGGG-TCACTGCATGCATGATGGTTCTCTTCAGCAGCTCCTGAATGTTCCGGATGAGCTCGGCTTCATGAGGGAGGAGA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3242901 101 + 6711082 GGCAGCCCTCG--------ACCCACCGGATCTGGCTCACTGCTTGCAGGATGGCTCTCTTCAGCAGCTCCTGAATGTTCCGGATGAGCTCAGCTTCCTGAGGGAGGAGA i panTro2.chr4_random C 0 C 0 s oryLat2.chr1 8939298 106 - 39973033 CTCTGCAGACGTTCAG---ACTCACCTGATCTGACTAGCAACCTGAGCAATGGTCCTCTTCAGGAGAGCCTGGATGTTCCTGATCAGGCCCACTTCCTGCAGGACAGGA i oryLat2.chr1 I 5 I 6173 s fr2.chrUn 158501784 102 - 400509343 GGCCGCACCCGTGTTTGACACTCACGCGATCTGACTGGCGACCTGAGCCGTGGTTCTCTTCAGCAGAGCCTGGACGCTCCGGATCAAGTCCACCTCCTGCGG------- i fr2.chrUn C 0 I 240 s danRer6.chr1 4916213 81 - 59305620 ------------------GACTAGCCTTATCTGGTTGATGGTTTGGTCCAGAGTTTTTTTCAGCAGGGTCTGGATGCTTCTGATCAGCTCCACCTCCTG---------- i danRer6.chr1 I 1170 I 1502 s gasAcu1.chrIX 5405681 79 - 20249479 -------------------ACTCACTTGATCTGACTGACAACTTCAGCCGTAGTCCTCTTCAGAAGAGCCTGGACGCTCCTGATCAAGTCCACTTCCT----------- i gasAcu1.chrIX I 124 I 571 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3029767 1069 + 4425020 I e tetNig2.chr18 8737720 0 - 11077504 C e calJac1.Contig1178 226663 2302 - 516707 I a score=537674.000000 s hg19.chr4_gl000194_random 56927 1087 + 191469 CGCCCTGAGCACCAGAGCCGGTCCTTGGTGAGGATCCCAGGAGGCCCAGCTGCTGCAGGCCTTGGTCAACACCTGAGCAACCAGAAATAGTTGAATGCC-GGGCCTGAGCTCTGACTGTGCAAGTTCTGCTCTCTCACTGGGTTTATCCTGGGCTTTTGGGCATTCTCCTTGGTGCGTTGTAAGTGGGGTGTTTTCCTCCAGGGCCTTCTATGGGCTGCTGGGAAGGTCACTCAGTGGCAGTTCCCACGCCCCAGGCCTCAAGAGTCATCACTGCTGCTCACTCAGTGCACCCAGGAACGTTGGCCTGTCCCTGGCCTCTGGACAGCTCCTGAGGACCCAAACTCTGGGGGCCCAGATGCCCGCCCAGGCTGCCCCTCAGGGCTCTGTGTTGGGAAAGACCATCCTCACACCAAGAGCAGGAGGAAGACCCTGTGTTTCTTCTTACTGCCTGGCCAGTTTAATTTTCTGTGTGTAGGAACAAGAC-TTTTTTCCCTGTGATTGGGGTCTTTGCCTGGACCACCAGCTACCTCCTTGTGTGCCAGAGCCCGAGTCCTGCACCCCTCTGTCCCTGGGTTTTCCTCT--------TCCTGCACTGTCAGTGTCTCCATCACTTCGCAGGCACCCTTGTTGCAGGCAGAGGGTTTGCGGGAGCTGCAGCAGTTCTTGAGGCACTGAGAGGGTGCAGGGGGATAGGCCTGCAGAAggggaagggagggaggagggaaggcatgaggggagggagggaCTCAAGGGTTCTTGCCTGAGTTTGGGGGTATGGCAGGAGACCAGCTGCCTCCACCCCACATCTTTCACAAATGTCTACAGGCCTGTAGTGGTTCTCATGGAGGCCCCAGGCTCTGAGAGCTCAGGGAATTCTCCAGAGCCAGCATCAGGGCCAGGACTGAGTTACTTCCTCACCCTATGGGGTTGCCCCATAGACAAGCTGGGCTGGATTGGGAAGTTACAGGTGACATGGAG--AAGGGGACCTGTGGGTGCAGATCTTCGTGTCCCTGGCTCTGTATAGGATGAATGGGAGCAGTGGCTCCCAGCCTATCCCACCCTACCTGTCCACACCCGCAGTGCTGGCCCA s rheMac2.chr15 3769770 1089 - 110119387 CGCCCTGAGCACCAGAGCCAGTCCCTGGTGAGGATCCCAGCAGGCCCAGCTGCTGCCGGCCTTGGTCAACACCTGAGCCACCCGAAGGAGCTGAGTGCCGGGGCCTGAGCTCTGACTGTGCAAGTTCTGCTGTCTCACTGGGTTTATCTTGGGCTTTTGGGCATCCTCCTTGGTGAGTTGTAAGTGGGGTGTTTTCCTCCAGGGCCTTCCATGGGCTGCTGGGAAGGTCCCTCAGCAGCAGTTCCCACGCCCCAGGCTTTAGGAGTCATCACTGCTGCTCCCTCAGTGCACCCAGGAACATTGGCCTGCCCCTGGTGCCTGAACAGCCCCTGAGGAACCAAACTCTAGGGGCCTAGATGCCTGCCCAGGCTGCCCCTCAGGGATCTGTGCTGGGAAAGGCCATGCTCACAGCAAGAACAGGAGGAGGATCCTATGTTTCTTCTTACTGCCTGGCCAGTTTAATTTTCTGTGTGTAGGAACAAGCC---TTTTCCCTGTGATTGGGGTCTTTGCCTTGACCACCGGCTACCTCCGTGTGTGCCAGGGCCCAAGTCCTGCGCCCCTCTGTCCCTGGGTTTGCCTCTTCCTGCACTCCTGCACTGTCAGTGTCTCCATTACTGGGCAGGTGCCCTTGGTGCGGGCAGAGGGTTTGCGGGAGCTGTAGGAGTTCTTGAGGCACTgagggggtgcagggggaggggtct------ggggaagggagggaggagggaaggcatgaagggaggaatgaaCTCAAGGGTTCTTGCCTGAGCTTGGGGGTGTGGCAGGAGAACAGCTGCCCCCACCCCACATCTTTCATGAATGTCTACGGGCTTGCAGTGGTTCTCAGGGAGGCCCCAGGCTCTGAGAGGTCAGAGAATTCTCCAGAGCCAGCATCAGGGCCAGGACTGAGTTACTTTCTCACCCTATGAGGCTGCCTCACTGACAAGCTGGGCTGGATTCGGAAGTTACAGG-GACATGGAGGAGAGGGGACCTACGGGTGCAGATCTTTGTTGCCCGGGCTCTGTATAGGATGAATGGGAGCGGTGGCTCCCAGCCCACCCCACCCTAGCTGTCCACACCGGCAGTGCTAGTTCA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11810367 1083 + 72422247 AGCCCTGAGCACCAGAGCCGGTCCCTGGTCAGGATCCCAGGAGGCCCAGCTGCTGCAGGCCTTGGTCAACACCTGAGCAACCACAAGGAGTAGAATGCC-GGGCCTGAGCTCTGACTGTGCAAGTTCTGCTCTCTCACTGGGTTTATCTTGGGCTTTTGGGCATTCTTCTTGGTGCGTTGTAAGTGGGGTGTTTTCCTCCAGGGCCTTCTATGGGCTGCTGGGAAGGTCCCTCAGCAGCAGTTCCCACGCCCCAGGCTTCAGGAGTCATCACTGCTGCTCACTCAGTGCACCCAGGAACGTTGGCCTTCCCCTGGCCTCTGGACAGCCCCTGAGGACCCAAACTCTGGGGG-CCAGATGCCCGCCCAGGCTGCCCCTCAGGGCTCTGTGCTGGGAAAGGCCATCCTCACACCAAGAATAGGAGAAGGACCCTGTGTTTCTTCTTACTGCCTGGCCAGTTTAATTTTCTGTGTGTAGGAACAAGCC---TTTCCCCTGTGATTGGCGTCTTTGCCTCGACCACCGGCTACCTCGTTGTGTGCCAGGGCCCGAGTCCTGCACCCCTCTGTCCCTGGGTTTGCCTGT--------TCCTGCACTGTCAGTGTCTCCATCACTTGGCAGGTGCCCTTGTTGCAGGCAGAGGGTTTGTGGGAGCTGCAGGAGTTCTTGAGGCAC--AGAGGGTGCAGGGGGAAGGCCCTGCAGAAGTggaagggagggaggagggaaggcatgaggggagggagggaCTCAAGGGTTCTTGCCTGAGCTT-GGGGTATGGCAGGAGACCAGCTGCCCCCACCCCACATCTTTCACGAATGTCTACAGGCGTGTAGTGGTTCTCAGGGAGGCCCCAGGCTCTGAGAGGTCAGAGAATTCTCCAGAGCCAGCATCAGGGCCAGGACTGAGTTACTGTCTCATCCTGTGGGGCTGCCCCACAGACAAGCTGGGCTGGATTGGGAAGTTATAGGGGACATGGAGGAGAGGGGACCTGTGGGTGCAGATCTTGGTGTCCCCAGCTCTGTATAGGATGAATGGGAGCAGTGGCTCCCAGCCCACCCCACCTTATCTGTCCACACCTACAGTGCTGGCCCA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3243002 1088 + 6711082 CGCCCTGAGCACCAGAGCCGGTCCTTGGTGAGGATCCCGGGAGGCCCAGCTGCTGCAGGCCTTGGTCAACACCTGAGCAACCAGAAATAGTTGAATGCC-GGGCCTGAGCTCTGACTGTGCAAGTTCTGCTCTCTCACTGGGTTTATCCTGGGCTTTTGGGCATTCTCCTTGGTGCGTTGTAAGTGGGGTGTTTTCCTCCAGGGCCTTCTATGGGCTACTGAGAAGGTCCCTCAGCGGCAGTTCCCACGCCCCAGGCCTCAAGAGTCATCACTGCTGCTCACTCAGTGCACCCAGGAACGTTGGCCTGCCCCTGGCCTCTGGATAGCCCCTGAGGACCCAAACTCTGGGGGCCCAGATGCCCGCCCAGGCTACCCCTCAGGGTTCTGTGTTGGGAAAGACCATCCTCACACCAAGAACAGGAGGAAGACCCTGTGTTTCTTCTTACTGCCTGGCCAGTTTAATTTTCTCTGTGTAGGAACAAGCCTTTTTTTCCCTGTGATTGAGGTCTTTGCCTGGACCACCAGCTACCTCCTTGTGTGCCAGGGCCCGAATCCTGCACCCCTCTGTCCCTGGGTTTGCCTAT--------TCCTGCACTGTCAGTGTCTCCATCACTTCGCAGGCACCCTTGTTGCAGGCAGAGGGTTTGCGGGAGCTGCAGCAGTTCTTGAGGCACTGAGAGGGTGCAGGGGGATAGGCCTGCAGAAggggaagggagggaggagggaaggcatgaggggagggagggaCTCAATGGTTCTTGCCTGAGTTTGGGGGTATGGCAGGAGACCAGCTGCCTCCACCCCACATCTTTCACAAATGTCTACAGGCCTGTAGTGGTTCTCATGGAGGTCCCAGGCTCTGAGAGCTCAGGGAATTCTCCAGAGCCAGCATCAGGGCCAGGACTGAGTTACTCTCTCACCCTATGGGGTTGCCCCATAGACAAGCTGGGCTGGATTGGGAAGTTACAGGTGACATGGAG--AAGGGGACATGTGGGTGCAGATCTTCGTGTCCCCAGCTCTGTATAGGATGAATGGGAGCAGTGGCTCCCAACCTATCCCACCCTACCTGTCCACACCCACAGTGCTGGCCCA i panTro2.chr4_random C 0 C 0 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4916294 1502 - 59305620 I e oryLat2.chr1 8939404 6173 - 39973033 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e xenTro2.scaffold_27 3029767 1069 + 4425020 I e tetNig2.chr18 8737720 0 - 11077504 C e fr2.chrUn 158501886 240 - 400509343 I e gasAcu1.chrIX 5405760 571 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I a score=88863.000000 s hg19.chr4_gl000194_random 58014 217 + 191469 GACCTCGGTTTCCACCTCGGGAGCAACTGTCCCAACC------------------AGGGAGGGTC---TCTG-------------------------GGGAGCCCAGGGTCAGGATGACTGTGCCAGGACTCAAAGGTATTGGAGGAGG------AGAGGAGAAACAGCTGC------TTGGA--AGTCAGGGGCCTTCTGGGGCAAAACTGCCTC-----CTGTCACTAAGGGGTCAGATTTCGGGACTCAGGGGTCTCACGCACAGAGGGCTGGTCTCCC s panTro2.chr4_random 3244090 217 + 6711082 GACCTGGGTTTCCACCTCGGGAGCAACTGTCCCAACC------------------AGGGAGGGTC---TCTG-------------------------GGGAGCCCAGGGTCAGGATGACTGTGCCAGGACTCAAAGGTATTGGAGGAGG------AGAGGAGAAACAGCTGC------TTGGA--AGTCAGGGGCCTTCTGGGGCAAAACTGCCTC-----CTGTCACTAGGGGGCCAGATTTCGGGACTCAGGGATCTCACGCACAGAGGGCTGGTCTCCC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11811450 240 + 72422247 GATCTGGGTTTCCACCTCAGGAGCAACTGTCCCAGCC------------------AGGGAGGGTC---TCTGGGGAGATGCCTTGTGGCTCAGCCCAGGGAGCCCAGGGTCAGGATGACTGTGCCAGGACTCAAAGGGATTGGAAGAGG------AGAGGAGAAACAGCTGC------TTGGA--AGTCAGGGGTCTTCTGGGGCAAAGCTGCCTC-----TTGTCACTAAGGGGCCGGATTTCGGGACTC--GGGTCTCACGTGCAGAGGGCTGGGCTCCC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3770859 253 - 110119387 GGCCTGGGTTTCCACCTCGGGAACAACTGTCCCAGCC------------------AGCTATGGTC---TTTGGGGAGGTGCCTTGTGGCTCAGTTCAGGGATCCCAGGGTGAGGATGACTGTGCCAGCACTCAAAGGGATTGGAGGACAAAGCCCAGAAGAGGAACAACTGC------TTGGG--AGTCAGGGGCCCTCCAGGGCAAAGCTGCCTCCTGGTCTGTCACTAAGGGGCCAGATTTCGGGACTCAGGGTTCCCAAGTGCAGAGGCCTGGGCTCCC i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_27 3030836 205 + 4425020 GGCCCCAGTCTTTACCCACTGATCAATTCATTCACCCTCGCTTGTACACAATGATAGATAAGGGCAGGACTG-------------------------GCAATCTGTGGGTTCTGACAAATG---------CCAGAGGGGCTGCTGTAAG------ATGCCATAGACAGTCACTATTTATTGGGCCGGTGGGGGGCTGTTTGGGCC---TCTGTGTA-----CTTACACTGCCAGGGCCTATTTTGAGTCCCAG----------------------------- i xenTro2.scaffold_27 I 1069 I 56 e eriEur1.scaffold_143236 5495 1278 + 8649 I e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4916294 1502 - 59305620 I e oryLat2.chr1 8939404 6173 - 39973033 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e tetNig2.chr18 8737720 0 - 11077504 C e fr2.chrUn 158501886 240 - 400509343 I e gasAcu1.chrIX 5405760 571 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I a score=9686.000000 s hg19.chr4_gl000194_random 58231 60 + 191469 GTGTGCTTGCAGCAGCCACGTGGCTTGTCCACATG----AACTGC-----------CGGGGGCTCCTCCTCTCTG s rheMac2.chr15 3771112 58 - 110119387 GCATGCCTGCAGCAGCCACCTGGCTTGTCCACATG----AACTGC-----------C--GGGCCCCTCCTCTCTG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11811690 69 + 72422247 GCGTGCTTGCAGTAGCCACGTGGCTTGTCCACGTG----AACTGCGGTGGGTGGGTGGGGGGCTCCTCCTCTC-- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3244307 60 + 6711082 GTGTGCTTGCAGCAGCCACGTGGCTTGTCCACATG----AACTGC-----------CGGGGGCTCCTCCTCTCTG i panTro2.chr4_random C 0 C 0 s tetNig2.chr18 8737720 54 - 11077504 GTCCACCTCCTGCAGTCACA-GACgcgcagacaca----aacaca-----------aggcCACACGTCTC----- i tetNig2.chr18 C 0 C 0 s eriEur1.scaffold_143236 6773 25 + 8649 ---------------------------------------AGCTCC-----------CAAAGACCCTTGCCCCCTG i eriEur1.scaffold_143236 I 1278 N 0 s xenTro2.scaffold_27 3031097 32 + 4425020 ---------------------------TCTACATGAATAGACTGA-----------C-----CCCCCCCTCCTTT i xenTro2.scaffold_27 I 56 I 17 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4916294 1502 - 59305620 I e oryLat2.chr1 8939404 6173 - 39973033 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e fr2.chrUn 158501886 240 - 400509343 I e gasAcu1.chrIX 5405760 571 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I a score=5781.000000 s hg19.chr4_gl000194_random 58291 33 + 191469 TGCCCACAAGT----CC-------------------TGGCCACCCAAGGCT---GCTGG s panTro2.chr4_random 3244367 33 + 6711082 TGCCCACAAGT----CC-------------------TGGCCACCCAAGCCT---GCTGG i panTro2.chr4_random C 0 I 666 s ponAbe2.chrUn 11811759 33 + 72422247 TGCCCACAAGT----CC-------------------CAGCCACCCAAGGCT---GCTGG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3771170 33 - 110119387 CGCCCACAAGT----CC-------------------CGGCCACCAAAGGCT---GCTGG i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_27 3031146 59 + 4425020 TACCCACTAATAATACCTGTAGTATGTACAGACTGATGACCCCCTAAGCCTCTCACTGG i xenTro2.scaffold_27 I 17 I 16 s tetNig2.chr18 8737774 21 - 11077504 --------CCC----CG-------------------AGCCCTCCGAGGG-C---CC--- i tetNig2.chr18 C 0 C 0 s fr2.chrUn 158502126 30 - 400509343 TTCACACAAAC----CA-------------------AGACCGCCATGGGCC---CC--- i fr2.chrUn I 240 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e danRer6.chr1 4916294 1502 - 59305620 I e oryLat2.chr1 8939404 6173 - 39973033 I e petMar1.Contig11044 4733 4681 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e gasAcu1.chrIX 5405760 571 - 20249479 I e calJac1.Contig1178 226663 2302 - 516707 I a score=500424.000000 s hg19.chr4_gl000194_random 58324 308 + 191469 CACCTTCAGCAGCTCTGTCTCCACATGGTCACGCAAAAGGTTGGTGTGCTGGTGGCGCTGGCTGCACTGCATGTTGTCAGTGGTGATGGAGAAGGGCACCTCCATGGCATCCAGGGCGCGCTCCAGCCGTTGCTTCTGGGCCAGCAGCAGGTCGGTCTCCGCAGCCAGTGCCTCCACCTCACGCTGCAGCTC---CGACTTCC---AGCTGTTCGTGTCCTGCAGTCGCTCGCCCACCCTGCACGTGGAGTCTTGC------TGTGTCGGCTGTGCCAGTGCCTGGGTCTCTGCGGCCAGCTGCTGGCTCTCGTGCCCCT- s danRer6.chr1 4917796 305 - 59305620 TACCTTCAGAAGTTCCTCCTCCACCGCGTCCTTCACCAGGTCGGGACCGAAGCGTCTCTCCCGGCAGGTCAGGTTATCGGTGGCGATGGCGAAGGGAATCTCCGTGGCGTCCAGCGCTTTCTCCAGCCGCCGCCTGGAGCTGATCTGCAGGTCGGTTTCTGCGCTGAGCCGCTCAATGAGTCGCTCCAGCTC---GGACCTCC---AGAGGTGGATATCCTGCAGCCGCGCGCCCAGGTGTGTGGTGCCCTCGGTC------TGCGTGCGTAAAGTAGCCGCGTCGGTCTCCGCTTTCAGCGCTCGGGACTCGTGGC---- i danRer6.chr1 I 1502 C 0 s oryLat2.chr1 8945577 304 - 39973033 -ACCTTGAGCAGCTCCTCCTCGACAGAGTCCTGAACTAGGTCTGGCCCTGGCCTCTTGGCCCTGCAGTTCAGATTGTCAGTGGCAATGGCGTATGGGGTATCAGTGGCCTCCAGCGCCCTTTCCAGTCGTGTTCTCGCCGCCTGGAGCGCCTCCATGTCAGCCTGCAGCTGCTCAATGTGCCTTAGCAGCTC---AGACCTCC---AGTGATGGATCTCCTGCAGTCTCTCCCCGAGCAGCCGTGTTCCCTCGGCC------TGAGTCTGCAGGGTTACGCCCTCGCTGTCTCGGTTCAAGGTTCTGGACAGCTGCT---- i oryLat2.chr1 I 6173 C 0 s gasAcu1.chrIX 5406331 305 - 20249479 CACCTTCAGCAGCTCCTCCTCCACAGCGTCTCGGACCAGGTCCGGTCCCGGTCTCCTGGCCCTGCATTTGAGGTTGTCTGTGGCGATGGCGTATGAAATCTCGGTGGCGTACAGCGCCTTCTCCAGCCTCGTCTTCTGCGCCGACAGTGACTCCGTGTCGGCCAGCAGCTGGTGAATGTGCTGTTGCAGCTC---TGATTTCC---AGTCGTGGGTCTCTTGCAGTCTCTCCCCCAGAAGACGTGTCCCCTCAGCC------TGGGTCTGCAAAGTGGCCGCCTCAGTGTCCTGGTACAGAGCTTTGGACTCCCGCT---- i gasAcu1.chrIX I 571 C 0 s fr2.chrUn 158502156 305 - 400509343 CACCTTTAACAGCTCGTCCTCCACAGAGTCCCGGACCAGGTCCGCAGGCGGCCTCCTGGTCCTGCAGTTCAGGTTGTCGGTTGCGATGGCGTACGGGATCTGGGTGGCGTCGAGCGCCTTCTCCAGCCTTTTCTTCAGCGCCATCAGCGCGTGCGTGTCGGCCATCAGCTGCTCGATGCTCCGCTGCAGCTC---GGACTTCA---GGAGGTGGATGTCTTGGAGTCTTGCCCCCAGGTGCCGCGTCCCGTCGGCC------TGGCTCTGCTGGGTGTCGGCCTCGCCGTCCTGCTTCAGAGTTTTGGACTCTCTCT---- i fr2.chrUn C 0 C 0 s tetNig2.chr18 8737795 305 - 11077504 TaccttcaccagctcctcctccacagagtcCCGGACCAGGTCCGCAGCGGGCCTCCTGGCCCTGCAGCTCAGGTCATCCGTGGTGATGGCGTAGGGGATCTCGGTGGCGTCCAGCGCCTTCTccagcctcttcctcagcgCCATCAGGGCGTGTGTGtcggcctgcagctgctggatcttctgctgcagctc---ggACCTCA---GGAGGTGGATGTCCTGGAGTCTCTCCCCCAGCTGGCGCGTCCCCTCGGCC------TGGCTCTGCAGGGTGTCGGCCTCGCTGTCCCGGTTCAGGGCTCTCGACTCTCTCT---- i tetNig2.chr18 C 0 C 0 s rheMac2.chr15 3771203 305 - 110119387 CACCTTCAGCAATTCCGTCTCCACATAGTCGCGCACGAGGTTGGGGTGCTGGCGGCGCTCACGACACTGCAGGTTGTCAGTGGCGATGGAGAAGGGCACCTCCGTGGCGTCCAGGGCGCGCTCCAGCCTCTGCCTCTGGGCCAGCAACAGGTCGGTCTCCGCAGCCAGCGCTTCCACCTCGCGCTGCAGCTC---CGACTTCC---AGCCGTGCATGTCCTGCAGTCGCTCGCCAACCCTGCGCGTGGAGTCTTGC------TGCGTGCGCTGCGCCAGCGCCTGGGTCTCCGATGCCAGCTGCTGGCTCTCATGCC---- i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11811792 305 + 72422247 CACCTTCAGCAGCTCCGTCTCCACATGGTCGCGCACGAGGTTGGGGTGCTGGCGGCGCTCGCGGCACTGCAGGTTGTCAGTGGCGATGGAGAAGGGCACCTCAGTGGCGTCCAGGGCGCGCTCCAGCCGTTGCTTCTGGGCCAGGAGCAGGTCGGTCTCCGCAGCCAGCGCTTCCACCTCGCGCTGCAGCTC---CGACTTCC---AGCCGTGCGTGTCCTGCAGTCGCTCGCCCACCGTGCGCGTGGAGTCTTGC------TGCGTGCGCTGCGCCAGCGCCTGGGTCTCTGCGGCCAGCTGCTGGCTCTCGTGCC---- i ponAbe2.chrUn C 0 C 0 s petMar1.Contig11044 9414 314 - 20109 --CCTGCAGGAGCTGCTCGTGCGGCCCGTCGTGGACGAGCTCGGGGCCCGGGCGTCGCTCGCGGGCGCGGAGGTTGTCCGTGCAGAGCGCGAGGGGCATCTCCGTGGCGTCCAGAGCTCGTTCCAGGCGCCGCTTCTGTTCCACGAGCAGCTCCGTCTCCGACGTCACCTGCGAGGCGTCCACCCACAACGCACGCGACCCTCTTGAGCGCCCAACCGCGTGCAGACGCCCGCTTCGCTGGCGCGCAGACGCTCGCGAACATTGTGTGTGCCTG--CGCAGTCTGTTTCTCCCACAACGCggtggtagttgcgttcc---t i petMar1.Contig11044 I 4681 I 8127 s panTro2.chr4_random 3245066 304 + 6711082 ----TTCAGCAGCTCCGTCTCCACATGGTCACGCACGAGGTTGGCGTGCTGGTGGCGCTGGCTGCACTGCATGTTGTCAGTGGCGATGGAGAAGGGCACCTCCATGGCATCCAGGGCGCGCTCCAGCCGTTTCTTCTGGGCCAGCAGCAGGTCGGTCTCCGCAGCCAGCGCCTCCACCTCACGCTGCAGCTC---CGACTTCC---AGCTGTGCGTGTCCTGCAGTCGCTCGCCCACTCTGCACGTGGAGTCTTGC------TGTGTCGGCTGCGTCAGCGCCTGGGTCTCTGCGGCCAGCTGATGGCTCTCATGCCCCT- i panTro2.chr4_random I 666 C 0 s xenTro2.scaffold_27 3031221 301 + 4425020 ----TTGAGAAGTTCCAGCTCCACCTCATCCCTGACCAGCTCGGAGCCCCGCCTCCTGTCCCGGCACTTCAGATTATCTGTGGCGATGCTGAAGGGGATGTCGGTGGCATCCAAGGCTCTCTCCAGCCGGCCCTTCTGTTGCACCAGCAGCTGGGTCTCGGCCTCCACATCCCGGATCTCCCGGGCCAGCTC---CGACTTCC---AGAAGTGAATATCCAGCAGCCTCTCCCCCAGGCTCTTGGTACAGTCCGCC------TGGGAACGCTGGGCCCGGGCTTCTGTCTCCGTTACAAGCTGCTTGGCCTCATGCC---- i xenTro2.scaffold_27 I 16 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 226663 2302 - 516707 I a score=82632.000000 s hg19.chr4_gl000194_random 58632 127 + 191469 GCAGCTCCCGCTCTGACTGGTTGCAGTTGGCGAAGGCCTGGCGGTAGCGAGCATAGCAGTTCTGGAACCACACCTCC----------------------AGCCAGCGGTGGCCAGGCCGGAGGACGTGTAGGCGCCCGTGTTTCTGGCC s ponAbe2.chrUn 11812097 146 + 72422247 ---GCTGCCGCTCCGACTGGTCGCGGTCGGCGAAGGCCTGGTGGTAGCGAGCATAGCAGTTCTGAAACCACTCCTCCGGCAAGTACTTGGAGGTGCGGAAGCCGGCGGTGGCCAGGCCGGAGGACGTGTAGGCGCCCGTGTTGCGGGCC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3771508 146 - 110119387 ---GCTGCCGCTCCGACTGGTCGCGGTCCGCGAAGGCCTGGTGGTAGCGAGCATAGCAGTTCTGGAACCACTCCTCCAGCAGGTACTTGGCGGTGCGGAAGCCTGCGGTGGCCAGCCCGGAGGACGTGTAGGCGCCTGTGTTGCGGGCC i rheMac2.chr15 C 0 C 0 s tetNig2.chr18 8738100 116 - 11077504 ---GGATGCTGCGGGCCGCCACACGCTGGGCGCCGGCCTGCTGGAGGATGCTGTGGTAGTTGGAGAACCACTCGGCCGGGGTGTACTTGGCCGAGCGGTACCCG------------------------------ACCGTGGCCGAGCCC i tetNig2.chr18 C 0 C 0 s fr2.chrUn 158502461 116 - 400509343 ---GAACGCTGCGGGCCCTCACACGGTGGTCGCAGGCCTGCTGGAGGATGCTGTGGTAGTTGGAGAACCATTCCGCCGGGCTGTATTTAGCGGAGCGGTATCCG------------------------------ACCGTGGCGGTGCCC i fr2.chrUn C 0 C 0 s gasAcu1.chrIX 5406636 116 - 20249479 ---GGATGCTGCCGGCTTCGCGGCGGTTGGTGGCGGCCTGTTGAAGGATGCTGTGGTAGTTGGAGAACCACTCCGCTGGGGAGTATTTAGCTGAGCGGTAGCCG------------------------------GCTGTGGCAGAGCCT i gasAcu1.chrIX C 0 N 0 s oryLat2.chr1 8945881 87 - 39973033 ---GGATGCTCTCGGCTTCCAGGTTGTCGGCACCGGCCCGCACAAGAATTGTTTGGTAATTAGAGAACCATTCCGCCGGGCTGTATTTTG----------------------------------------------------------- i oryLat2.chr1 C 0 I 34 s danRer6.chr1 4918101 101 - 59305620 ---AGATGTTTTCCGCCTGGTTTCGGTCGGCGGCTGCCCGGTTTAACAGAGCGGAGTTATTGTCGAACCACTCGTCGGGGGTGTATTTGGCGCTCCGGTAACCC--------------------------------------------- i danRer6.chr1 C 0 N 0 s xenTro2.scaffold_27 3031522 146 + 4425020 ---TCCCTGTCTCCGACTGGTCCCGGTCCGAGAAGGCCCGGTAGAAGGTGGCCAGGTTGCCCTGCTGCCATTCTTCATGCAGGTACTTGGCTGTACGGAAGCCGGCAGTGGCCAGACCGGAGGAGGAGTACGGGCCCGTGTTCTGCGCC i xenTro2.scaffold_27 C 0 C 0 s panTro2.chr4_random 3245370 126 + 6711082 GCAGCTCCCGCTCTG-CTGGTTGCAGTCGGCGAAGGCCTGGTGGTAGCGAGCATAGCAGTTCTGGAACCACACCTCC----------------------AGCCGGCGGTGGCCAGGCCGGAGGACGTGTAGGCGCCCGTGTTGCGGGCC i panTro2.chr4_random C 0 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e petMar1.Contig11044 9728 8127 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 226663 2302 - 516707 I a score=-21073.000000 s hg19.chr4_gl000194_random 58759 37 + 191469 ---------------ACGT----CATACTCTTTGCAGGGCAGCTCGTAGGGTGGCA s rheMac2.chr15 3771654 37 - 110119387 ---------------ACCT----CGTACTCTTTGGCCGGCAGCTCGCAGGGCGGCA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11812243 37 + 72422247 ---------------ACGT----CGTACTCTTTGCAGGGCAGCTCGCAGGGCGGCA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3245496 37 + 6711082 ---------------ACGT----CATACTCTTTGCAGGGCAGCTCGCAGGGCGGCA i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_27 3031668 37 + 4425020 ---------------ACCTGAGGCGACTGCACCGGAAGGCTTGTCGCAGGGA---- i xenTro2.scaffold_27 C 0 C 0 s tetNig2.chr18 8738216 37 - 11077504 GCCGAGGGCTGCGGGGCGT----CCGGATGCGGGCGCGGCT--------------- i tetNig2.chr18 C 0 C 0 s fr2.chrUn 158502577 37 - 400509343 GCTGACGGTGGCGGGACCT----CCGACTGGGCGCGGGGCT--------------- i fr2.chrUn C 0 C 0 s gasAcu1.chrI 26587390 30 + 28185914 -----CCGTCA-AGCTCCT----TAAGTTTG-CGGATGACA--------------- i gasAcu1.chrI N 0 C 0 s oryLat2.chr1 8946002 32 - 39973033 -----CAGTTGCAGGTCAT----TGGGCTGGACGGGAGGGT--------------- i oryLat2.chr1 I 34 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e petMar1.Contig11044 9728 8127 - 20109 I e papHam1.Contig789918 768 6409 + 855 I e calJac1.Contig1178 226663 2302 - 516707 I a score=-18636.000000 s hg19.chr4_gl000194_random 58796 76 + 191469 CTGTCT---------GTG--GGGCCAGCTCT------GGTAGGAGCACATCCGTCTGCACCATGGTGTCTGCCGCCCACCAGGGCCAGGGGAG s papHam1.scaffold16121 43830 36 + 55498 --------------------GGGCCGGCTCTTTG---GTTAGGAGTACGTCCGTCTGCG---------------------------------- i papHam1.scaffold16121 I 6409 I 2255 s calJac1.Contig1178 228965 36 - 516707 CCGTCT---------GCG--GGGCCGGCTCTTTG---GTCAGCAGCACGT------------------------------------------- i calJac1.Contig1178 I 2302 I 2519 s panTro2.chr4_random 3245533 76 + 6711082 CTTTCT---------GCG--GGGCCGGCTCT------GGTAGGAGCACATCCGTCTGCACCATGGTGTCTGCCGCCCACCAGGACCAGGGGAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11812280 79 + 72422247 CCGTCT---------GCG--GGGCCGGCTCTTTG---GTTAGGAGCACATCCGTCTGCGCCATGGTGCCTGCCGCCCACCAGGGCCAGGAGAG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3771691 79 - 110119387 CTGTCT---------GCG--GGGCCGGCTCTTTG---GTTAGGAGTACGTCCGTCTGCGCCATGGTGCCAGCCGCCCACCAGGGCCAGGGGAG i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_27 3031705 54 + 4425020 CCGACT---------GTG--GGGCCAGC---------GGACGGGATACAAGTATCTGAG----AGGACATGTCGGTCG--------------- i xenTro2.scaffold_27 C 0 N 0 s tetNig2.chr18 8738253 23 - 11077504 CCGTCT---------CCG--GGGCCAGAACTCTG----------------------------------------------------------- i tetNig2.chr18 C 0 N 0 s fr2.chrUn 158502614 50 - 400509343 CTTTCTCAGGAGCCCCCA--GAGCCTTAACTCTGGT--GTCATAGCGCGGCCGT--------------------------------------- i fr2.chrUn C 0 N 0 s gasAcu1.chrI 26587420 59 + 28185914 CCACCC---------TCATTGGACTC-ATCTCTGGTGGGGATGAGTCCGCCTACAGGTG----GGAGTCTGAC-------------------- i gasAcu1.chrI C 0 I 2646 s oryLat2.chr1 8946034 37 - 39973033 CTGTCC---------GTA--GGACTC-------GGTGAGCCACAGCACGGCTGTC-------------------------------------- i oryLat2.chr1 C 0 I 4387 e felCat3.scaffold_149463 127157 6356 + 235511 I e petMar1.Contig11044 9728 8127 - 20109 I a score=40408.000000 s hg19.chr4_gl000194_random 58872 94 + 191469 TGAGGAGTGTGTGTGGTCAGCTTGTTGCGGTCAGCCCAGTGCAGTCATC-GGTCGGCTCCAACGGCTCAGTCCCAGAGCAGGACCTGGCTCCCAG s rheMac2.chr15 3771770 91 - 110119387 TGAGGGGTG----TGGCCAGCCGGTTGCGATCAGCCCAGTGCGGTCAGCGGGGCAGCTCCAGCGGCTCAGTCCCAGAGCAGGACGCGGCTCCCAG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11812359 95 + 72422247 TGAGGAGTGTGTTTGGTCGGCCGGTTGTGGTCAGCCTAGTGCGGTCAGCGGGGCAGCTCCAACGGCTCAGTCCTAGAGCGGGACGCGGCTCCCAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3245609 94 + 6711082 TGAGGAGTGTGTGTGGTCAGCTTGCTGCGGTCAGCCCAGTGCAGTCATC-GGTCGGCTCCAACGTCTCAGTCCCAGAGCAGGACGCGGCTCCCAG i panTro2.chr4_random C 0 I 333 e felCat3.scaffold_149463 127157 6356 + 235511 I e oryLat2.chr1 8946071 4387 - 39973033 I e petMar1.Contig11044 9728 8127 - 20109 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=281735.000000 s hg19.chr4_gl000194_random 58966 567 + 191469 TCGCTTGGGTGACACAGTAAACCAAGAGCTTCCTGTTGCCAAGAAACGGGATCTCTTCTCCAGTGGCTAGGGGAGGGGGCATTCAGGGCGGTGGGCAGAATTGCCCTCTTAAAGGGCCAGGCAGCCCCAGCCCCACCATCCCTGTCCCCACCTCGGGGCAATCAACAGTGGCCAAGGGTTCCTGTCACTTAGAGGATCCCAGGGCCAGCCCGTCTCCAGCCTCTGTGTCCCACTCTTAGGGTTCAGGGTGTGGGTGGGGACCTACTGCCCTGGCCCCTTCGTTGATTCATCCATTTGTTCCTAGTTT-GCTCTCTGATCCTGTCCTGTGCGGAGCTCTGCGCTCAGGGTGAACAAGACAGAGGAGGCTCTGCCCACCT---GCCCCCTCAGGGCAGAGGGCTGTGGCTGTTGTGTGGATGTTGGGTGTGCTGAGTGATAGTGTTACTTGATG-------CCGTACAGGTGGCTGCTCTCCCTGCCCTCCTGGCCCCAACAGCAGCCTGGTAGCACAGGGAGGGTCCCAGGCCAGGCCCCCTCAGGGGCAGTCTGAGGCAGTTCCTGCAGGGACTCCGC s panTro2.chr4_random 3246036 566 + 6711082 TCGCTTGGGTGACACAGTAAACCAAGAGCTTCCTGTTCCCAAGAAACAGGATCTCTTCTCCAGTGGCTAGGGGAGGGGGCATTCAGGGCGGCGGGCAGAATTGCCCTCTTAAAGGGCCAGGCAGCCCCAGCCCCACCATCCCTGTCCCCGCCTCGGGGCAATCAACAGTGGCCAAGGGTTCCTGTCACTCAGAGGATCCCAGGGCCAGCCCGTCTCCAGCCTCTGTGTCCCACTCTTAGGGTTCAGGGTGAGGGTGGGGACCTACTGCCCTGGCCCCTTCGTTGATTCATCCATTTGTTCCTGGTTT-GCTCTCTGATCCTGTCCTGTGCGGAGCTCCGCGCTCAGGGTGAACAAGACAGAGGAGGCTCTGCCCACCT---GCCCC-TCAGGGTAGAGGGCTGTGGCTGTTGTGTGGGTGTTGGGTGTGCTGAGTGATAGTGTTACTTGATG-------CCGTACAGGTGGCTGCTCTCCCTGCCCTCCTGGCCCCAACAGCAGCCTGGTAGCACAGGGAGGGTCCCAGGCCAGGCCCCCTCAGGGGCAGTCTGAGGCAGTTCCTGCAGGGACTCCGC i panTro2.chr4_random I 333 C 0 s ponAbe2.chrUn 11812454 568 + 72422247 TCGCTTGGGTGACACTGTAAACCAAGAGCTTCCTGTTGCCAAGAAACGGGATCTCTTCTCCAGTAGCTAGGGGAGGGGGCATTCAGGGCGGCGGGCAGAACTGCTCTCTTAAAGGGCCAGGCAGCCCCAGCCCCACCATCCCTGTCCCCGCCTCGGGGCAATCCGCAGTGGCCAAGGGTTCCTGTCACTTAGAGGATCCTGGGGCCAGCCCGTCTCCAGCCTCTGTGTCCCCCCCTTAGGGTTCAGGGTGTGGGTGGGGATCTACTGCCCTGGCCCCTTCCTTGGTTCATCCATTTGTTCCTGGTTT-GCTCTCTGATCCTGTCGTGCGCGGAGCTCCGCGCTCAGGGTGAACAAGACAGAGGAGA--CTGCTCACTTGCAGCCCTCTCACGGCAGAGGGCTGTGGCTGTCGTGTGGGTGTTGGGTGTGCTGACTGGTAGTGTTACTTGATG-------CCGTACAGGTGGCTGCTCTCCCTGCTCTTCTGGCCCCAACAGCAGCGTGGTAGCACAGGGAGGGTCCCAGGCCAGGTCCCCTCGGGGGCAGTCTGAGGCAGTTCCTGCAGGGACTCTGC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3771861 571 - 110119387 TCGCCTGGGTGACACTGTCAACCAAGAGCTTCCTGTTGCTAAGAAACGGGATCCCTTCTCCAGTGGCTGGGGGAGGGGGCATTCAGGGTGGCAGGCAGAACTGCCCTCTTAAAGGGCCAGGCAGCCCCAGCCCCACCATCCCTGTCCCCGCCTCGGCGCAATCAGCAGTGGCCAAGGGTTCTTGTCACTTAGAGGATCCTGGGGCCAGCCTGTCGCCAGCCTCTGTGTCCCACCCTTAGGGTTTAGGGTGTGGGTGGGGACCTACTGCCCTAGCCCCTTCCTTGGTCCATCCGTTTGTTCCTGGTTTGGCTCTCTGAACCTGTCCTGTGGGCA-------GCTCGGGGTGAAAAAGACAGAGGAGGCTCTGCCCACCTGCAGCCCCCTCAGGGCACAGGGGTGTGGCTGTCGTGTGGGTGTTGGGTGTGCTGACTGACAGTGTTACTTGATGTCTCCCACTGTACATGTGGCTGCCCTCCCTGCCCTCCTGACCCCAACGGCAGCCTAGTAGCACAGAGAGGGTCCCAGGTCAGGCCTCCTCCGGGGCAGTCTGAGGCAGTTCCTGCAGGGACTCTGC i rheMac2.chr15 C 0 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e oryLat2.chr1 8946071 4387 - 39973033 I e petMar1.Contig11044 9728 8127 - 20109 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=59144.000000 s hg19.chr4_gl000194_random 59533 90 + 191469 TCCATTTTCTCCTGGACCTAGTGCCTGAGAGC-------------CAGGCCCTGGCCTCTGGCCTTCTCCTCCCAAGTCCCAGCCAGGGTCCTCTCAGGCTGG s panTro2.chr4_random 3246602 90 + 6711082 TCCATTTTCTCCTGGACCTAGTGCCTGAGAGC-------------CAGGCCCTGGCCTCTGGCCTTCTCCTCCCAAGTCCCAGCCAGGGTCCCCTCAGGCTGG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11813022 90 + 72422247 TCCATTTTCTCCTGGACCTAGTGCCGGAAAGC-------------CAGGCCCTGGCCTCTGGCCTTCTCCTCCCAAGTCCCAGCCAGGGTCCCCTCAGGCTGG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3772432 90 - 110119387 TCCATCTGCTCCTGGACCTAGTGCCTGAGAGC-------------CAGGCCCTGGCTTCTGGCCTCCTCCTTCCAAGTCCCAGCCAGGGTCCCTTCAGGCTGG i rheMac2.chr15 C 0 C 0 s ochPri2.scaffold_12924 25528 100 - 34046 TCTGTTTCCTGCTGGGCC---TGCCTGGGGGCAGGAGACAGGCCGCAGGCACTGGCCTCTGTCCATACCCTCCCAGTGGGCAGCTGGGTCTCTCACAGGCAGG i ochPri2.scaffold_12924 N 0 N 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e oryLat2.chr1 8946071 4387 - 39973033 I e petMar1.Contig11044 9728 8127 - 20109 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=142599.000000 s hg19.chr4_gl000194_random 59623 281 + 191469 GCACAGTGGGGAGGGAGGGAGTCTGAGTGTGCTTTTCCCTGGGGAGTTGAATTCAGCCTCTGGGTAAGTGTCCAGAGTCAGATGCCCAACTCTGCCCCACAGGGCGGAGGCAGGTCCTGTGCTGCCGAGGCTGCCCTGAAAGCCACCCAGGGCCATGCTGCCTGGCAGAGGCTGGATGGGCAGGAAGCGCCCCAGGACACATCGGAGTCCCCCAAACCTGGGGCCAGGGGAGCCCCAGCCTAGGCGCGATTCCCCACGCAGCCAGCGGAGGGTGGCGTTGG s panTro2.chr4_random 3246692 281 + 6711082 GCACAGCGGGGAGGGAGGGAGTCTGAGTGTGCTTTTCCCTGGGGAGTTGAATTCAGCCTCTGGGTAAGTGTCCAGAGTCATATGCCCAAATCTGCCCCACAGGGCGGAGGCAGGTCCTGTGCTGCGGAGGCTGCCCTGAAAGCCACCCAGGGCCATGCTGCATGGCGGAGGCTGGATGGGCAGGAAGCACCCCAGGACACATCGGCGTCCCCCAAACCTGGGGCCAGGGGAGCCCCAGCCTAGGCGCGATTCCCCACGCAGCCAGCGGAGGGCGGCTTTGG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11813112 277 + 72422247 GCACAGCG----GGGAGGGAGTCTGAGTGTGCTCTTCCCTGGGGAGTTGAATTCAGCCTCTGGGTAAGTGTCCAGAGTCAGACGCCCAAATCTGCCCCACAGGGCGGAGGCAGGTCCTGTGTTGCGGAGGCTGCCCTCAAAGCCACCCAGGGCCAGGCTGCCTGGCGGAGGCTGGATGGGTAGGAAGCGCCCCAGGACAAATCGGAGTCCCCCAAACCTGGGGCCAGGGGAGCCCCAGCCTAAGCGCGATTCCCCACGCGGCCAGCGGAGGGCGGCGTTGG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3772522 277 - 110119387 GCACAGCG----GGGAGGGAGTCTGAGCGTGCTCTTTGCTGGGGAGTTGAATTCAGCCTCTGGGTAAGTGTCCAGAGTCAGACTCCCAAATCTGCCCCACAGGGTGGAGGCAGGTCCTGTGCTGCGGAGGCTACCCTCAAAGCCACCTGGGGCCAGGCTGCCTGGCAGAGGCTGGATGGGCAGGAAGCGCCCCAGGACACATGGGAGTCCTGCAAACCTGGGGTCAGGGGAGCCCCAGCCTAGGCGCGATTCCCCAGGCGGCCAGCGGAGGGCGGCGTTGG i rheMac2.chr15 C 0 C 0 e felCat3.scaffold_149463 127157 6356 + 235511 I e oryLat2.chr1 8946071 4387 - 39973033 I e petMar1.Contig11044 9728 8127 - 20109 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=14653.000000 s hg19.chr4_gl000194_random 59904 48 + 191469 TCTGGCGGT--------GAGAAGCCTGCGGCTCCTGGCTCGGCC-TCCCCTCCGCCT s felCat3.scaffold_149463 133513 32 + 235511 TCCGGGAGTCGGAGAGGGGGCgggctgcggct------------------------- i felCat3.scaffold_149463 I 6356 I 37 s rheMac2.chr15 3772799 48 - 110119387 CCTGGCGGT--------GAGAAGCCTGAGGCTCCTGGCTTGGCC-TCCCCTCAGCCT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11813389 48 + 72422247 TCTGGCAGT--------GAGAAGCCTGCGGCTCCTGGCTCGGCC-TCCCCTCCGCCT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3246973 48 + 6711082 CCTGGCGGT--------GAGAAGCCTGCGGCTTCTGGCTCGGCC-TCCCCTCCGCCT i panTro2.chr4_random C 0 C 0 s petMar1.Contig11044 17855 26 - 20109 -----------------------------gcccgtgtctcacctgtcccgcccgt-- i petMar1.Contig11044 I 8127 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=9974.000000 s hg19.chr4_gl000194_random 59952 21 + 191469 -----GCCTGGCGCATGCAGTCCTGG s panTro2.chr4_random 3247021 21 + 6711082 -----GCCTGGCGCATGCACTCCTGG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11813437 21 + 72422247 -----GCCTGGCGCATGCAGTGCTGG i ponAbe2.chrUn C 0 M 503 s rheMac2.chr15 3772847 21 - 110119387 -----GCCTGGTGCATGCAGTCCTGG i rheMac2.chr15 C 0 I 1 s felCat3.scaffold_149463 133582 21 + 235511 -----GCTCGGCCCTTGGAGGTCTGA i felCat3.scaffold_149463 I 37 C 0 s petMar1.Contig11044 17881 18 - 20109 gtctcacctgtcccaccc-------- i petMar1.Contig11044 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=22745.000000 s hg19.chr4_gl000194_random 59973 108 + 191469 GGACCCCAGCCCCTCCGGCCTCCTCTT---CCCTGAGAATCCCGCA-------CCAGAAAGTCCTC--GCTAGGAAGTCCATGCCCTTCCTACAGCACAGGCCCCTGGGCCCCTGTTCCT------- s panTro2.chr4_random 3247042 108 + 6711082 GGACCCCAGCCCCTCCGGCCTCCTCTT---CCCTGAGAACCCCGCA-------CCAGAAAGTCCTC--GCTAGGAAGTCCATGCCCTTCCTACAGCACAGGCCGCTGGGCCCCTGTTCCT------- i panTro2.chr4_random C 0 C 0 s rheMac2.chr15 3772869 107 - 110119387 GACCCCCAGCCCCTCCGGCGTCCTCTT---CCCTGAGACTCCC-CA-------CCAGAGAGTCCTC--ACTAGGAAGTCCATGTCCCTCCTACAGCACAGGCCCCTGGGCCCCTGTTCcc------- i rheMac2.chr15 I 1 C 0 s felCat3.scaffold_149463 133603 116 + 235511 -CGCCCTGGCCCAGATAGCCCTCTCCTTGCCCCTGCCAGTCCCGCGGGTCGTCTCCAACAGCCCACCTAGCGGGACGTGAACACCGCTCCC-CAGCACA--CCCCATGGCCCTTGTCCCT------- i felCat3.scaffold_149463 C 0 N 0 s petMar1.Contig11044 17899 104 - 20109 gtgtctcacctgtCCCGCCCGTGTCTC---ACCTGTCCCGCCCGTG-------TCTCACCTGTCCC----------GCCCGTGTCTCACCTGTCCCACTCGTGTCT---CACCTGTCccacccgtgt i petMar1.Contig11044 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I e ponAbe2.chrUn 11813458 503 + 72422247 M a score=36862.000000 s hg19.chr4_gl000194_random 60081 169 + 191469 TCCACCTTCACCTCCTCTCTCACCACAGCCCACACCC---TCACTCCAGCCACAGGAGCCGGGGCTCCTCCTGGGCCAT-----TTCTACC-ACCCCGCCCA-AGTCTCACC-AGCACAACCATGTGCCGGCCAGTGCCCTCCTCCTGG---ACCTGACCTCCCCCGGACCTGACCTCTCCCG s panTro2.chr4_random 3247150 169 + 6711082 Tccaccttcacctcctctcccaccacagcccgcaccc---tcactcccgccACAGGAGCCGGGGCTCCTCCTGGGCCAT-----TCCCACC-ACCCTGCCCA-GGTCTCTCC-AGCACAACCATGTGCCGGCATGTGCCCTCCTCCTGG---ACCTGATCTCCCCCGGTCCTGACCTCTCCCG i panTro2.chr4_random C 0 C 0 s rheMac2.chr15 3772976 160 - 110119387 tccaccttcaccctctctcccaccatagcccccaccc---tcactccGGCCACA------GGGGCTCCTCCTGGGCCAT-----TCCCA-----CCCGCCCAGGGTCTGTCC-ATCCCCACCGTGTGCCCGCCAGTGTCCTCCCCCTGG---ACCTGACCCCCCCCGATCCTGACCTCTCCCG i rheMac2.chr15 C 0 C 0 s petMar1.Contig11044 18003 173 - 20109 ctcacctgtcccacccgtgtctcacctgtcc-cacccgtgtctcacctgtccca----cccgtgtctcacctgtCCCGCCCGTGTCTCACCTGTCCCGCCCG-TGTCTCACCTGTCCCGCCCGTGTCTCACC---TGTCCCGCCCGTGTCTCACCTG-TCCCGCCCGTGTCTCACCTGTCCCG i petMar1.Contig11044 C 0 N 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I e ponAbe2.chrUn 11813458 503 + 72422247 M a score=33189.000000 s hg19.chr4_gl000194_random 60250 136 + 191469 TGGCCAGAACCCTCAGTCCATGCAGCTGTCACCACGGTGCGCCTGGCCTGACACAGCCTCCTGATGGGGCTTTGAGGACAGCAGCCAGTAGACTTACCCCAACCCAGGCCGAGCCAGAACCTATTGCAGGTGGCCT s panTro2.chr4_random 3247319 136 + 6711082 CGGCCAGAACCCTCAGTCCATGCTGCTGTCACCACGGTGCGCCTGGCCTGACACAGCCTCCTGATGGGGCTTTGAGGACAGCAGCCGGGAGACTTACCCCAACCCAGGCCGAGCCAGAACCTATTGCAGGTGGCCT i panTro2.chr4_random C 0 C 0 s rheMac2.chr15 3773136 136 - 110119387 CTGCCAGAACCCTCACTCCATGCTGTGGTCACTGCGGTGTGCCTGGCGTGACACAGCCTCCTGATGGGGCTTTGAGGACAGCGTCCCAGAGACTTACCCCAACCCAGGCCGAGCCAGAACCTGTGGCAGGCGGCCT i rheMac2.chr15 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I e ponAbe2.chrUn 11813458 503 + 72422247 M a score=348688.000000 s hg19.chr4_gl000194_random 60386 684 + 191469 GGGAACCTCTTCTCACTGTC---CGTCAAGATTGGGAGGTCAGCGGACCTTCAGGGACTGGTGTGGTCTGAGAAACATCCTTGAGCCTCGCCATGACTCAGTTTCCCCAGATGGCATCAGGCTGGAGCCCATGCAGGGCAGGATGCCAGGCTCCACCTTTTGTCTGGAACCTGCATTCACTGGGCACCTCTCTGTAGGCATAGCAGAGCAGAGCTCCCTGTTTCTGT-CCCTGATCTGCAGCCCCAGGAGCCCGAGAGACCACCTAAGCCAAGGGGAAGGCCTCTGGGCCAGAGCCCAGCTCTGCGAAGTGGGAGACCTCTCAGCCACCACTTCCAGGTGCCCTGAAGTCGTTGGCAGGGGGTGCTGCCTACTTGGGGCTCCCAGACTAAGGGAACAC--ATTCACCTGGTGACCACAATAGGCCCTGCAGGCTGAGGCACAGGATTTGACCAAGGACGCATCAGAGTTAGGGGACTGGGCCCTGACTCCTGCCAGCTGCAAACTCCCAAAGCCCCCAGCCCTCTCATGGGGTGAAGACACCCTGAAGGACACTCCAGTGTGCTCCCACCTCTGGGTTCTGCCAGCCAGAGAGTGGGACTCTCAGGCCACATGTGTCTTGCTGGATCTCAGCTTCAGGGA--CCCAGGGTGCTGGCAGCTCTCTGAGACCTGGGTCAGGGGGTGTCCATTAG s panTro2.chr4_random 3247455 684 + 6711082 GGGAAACTCTTCTCACTGTC---CGTCAAGATTGGGAGGTCAGCGGACCTTCAGGGACTGGTGTGGTCTGAGAAACATCCTTGAGCCTCGCCATGACTCAGTTTCCCCATATGGCAGCAGGCTGGAGCCCACGCAGGGCAGGATGCCAGGCTCCACCTTTTGTCTGGAACCTGCATTCACTGGGCACCTCTCTGTAGGCATAGCAGAGCACAGCTGCCTGTTTCTGT-CCCTGATCTGCAGCCCCAGGAGCCCGAGAGACCACCTAAGCCAAGGAGAAGGCCTCTGGGCCAGATCCCAGCTCTGCGAAGTGGGAGACCTCTCAGCCTCCACTTCCAGGTGCCCTGAAGTCGTTGGCAGGGGGTGCTGCCTACTTGGGGCTCCCAGACTAAGGGAACAC--ATTCACCTGGTGACCACAATAGGCCCTGCAGGCTGAGGCACAGGATTTGACCAAGGACGCATCAGAGTTAGGGGACTGGGCCCTGACTCCTGCCAGCTGCAAACTCCCAAAGCCCCCAGCCCTCTCATGGGGTGAAGACACCCTGAAGGACACTCCAGTGTGCTCCCACCTCTGGGTTCTGCCAGCCAGAGAGTGGGACTCTCAGGCTACATGTGTCTTGCTGGATCTCAGCTTCAGGGA--CCCAGGGTGCTGGCAGCTCTCTGAGACCTGGGTCAGGGGGTGTCCATTAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11813976 680 + 72422247 GGGAACCTCTTCTAACTGTC---CGTCAGGATTGGGAGGTCAGGGGACCTTCAGGGACTGGTGTGGTCTGAGAAACATCCTCGAGCCTCGCCATGACTCAGTTTCCCCAGATGGCAGCAGGCTGGAGTCCACGCAGGGCAGGATGCCAGGCTCCACCTTTTGTCTGGAACCTGCATTCACTGGGCACCTCTCTGTAG-----GCAGAGCAGAGCTGCCCGTGTTTGTCCCCTGATCTGCAGCCCCAGGAGCCCGAGAGACCACCTGAGCCAAGGAGAAGGCCTCTGGGCCAGAGCCCAGCTCTGCGAAGTGGGAGACCTCTCAGCCTCCAGTTCCAGGTGCCCTGAAGTCGTTGGCAGGGGGTGCTGCCTGCTTGGGGCTCCTAGACTAAGGGAACAC--ACTCACGTGGTGACTGCAATAGGCCCTGCAGGCTGGGGGACAGGATTTGACCAAGGACGCATCAGAGATAGGAGACTGGGTCCTCACTCCTGCCAGCTGCAAACTCCCAAAGCCCCCAGCCCTCTCATGGGGTGAAAACGCCCTGAAGGACACTCCAATGTGCTCCCACCTCTGGGTTCTGCCAGCCAGAGAGTGGGACCCTCAGGCCACATGTGTCTTGCTGGATCTCAGCCTCAGGGA--CCCAGCGTGCTGGCAGCTCCCTGAGACCTGGGTCAGGGGGTGTCCATTAG i ponAbe2.chrUn M 503 C 0 s rheMac2.chr15 3773272 686 - 110119387 GGGAACCTCTTCTCACTATCCGTCGTCAAGATTGGGAGGTCAGGGGAACCTCAGGGGCTGCAGTGGTCTGAGAAACAACCTCGAGCCTCACTGTGACTCAGTTTCCCCAGGCGGCAGCAGGCTGGAGCCCACGCAGGGCAGGATGCCAGGCTCCACCTTTTGTCTGGAACCTGCATTCACTGGGCACCTCTCTGTAG-----GCAGAGCAGAGCTGCCCATGTTTGTTCCCTGATCTGCAG-CCCAGGAACCCGAGAGACCACCTGAGCCAAGGAGAAGGCCTGTGGGCCAGAGCCCAGCTCTGCGAAGTGGGAGACCTCTCAGCCTCCACTTCCAGGTGCCCTGAAGTCGTTGGCAGGGGGCGCTGCCTGCCTGGGGCTCCCAGACTGAGGGAACACAGATTCACCTGGTGACCGCAATAGGCCCTGCAGGTTGAGGGACAGGACTTGACCAAGGATGCATCAGAGATAGGAGACTGGGCCCTCACTCCTGCCAGCTGCAAACTCCCAAAGCCCCCAGCCCTCTCATGGGGTGAAGATGCCCTGAAGGACACTCCAGTGTGCTCCCACCTCTGGGTTCTGCCAGCTGGAGAGTGGGAGCCTCAGGCCGCATGTGTCTTGCTGGGTCTCAGCTTCAGGGGACCCCAGGGTGCTGGCAGCTCCCTGAGACCTGGGTCAGCGGGTATCCATTAG i rheMac2.chr15 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 43866 2255 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 229001 2519 - 516707 I a score=39384.000000 s hg19.chr4_gl000194_random 61070 57 + 191469 AGCACCTTGGTCAGGACCCAGAGATAGGGAGGGCAGGGCTAAG------AGCACCCCAGGCAG s rheMac2.chr15 3773958 57 - 110119387 AGCACCTTGGTCAGGACCCAGAGATGGGGAGGGCAGGGCTAAG------AGCACTCCGGGCAG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11814656 57 + 72422247 AGCACCTTGGTCAGGACCCGGAGATGGGGAGGGCAGGGCTAAG------AGCACCCTGGGCAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3248139 57 + 6711082 AGCACCTTGGTCAGGACCCAGAGATAGGGAGGGCAGGGCTAAG------AGCACCCCAGGCAG i panTro2.chr4_random C 0 C 0 s pteVam1.scaffold_15842 2307 58 - 27272 AGCCCCCCAGTCAGGACCCAGACACTGAGAGGGCAGAGCCAAGTCACTTGGGATGCCG----- i pteVam1.scaffold_15842 N 0 C 0 s calJac1.Contig1178 231520 21 - 516707 ------------------------------------GGCTAAG------AGAACCCCGGGCAG i calJac1.Contig1178 I 2519 I 67 s papHam1.scaffold16121 46121 21 + 55498 ------------------------------GGGCAGGGCTAAG------AGCACCCC------ i papHam1.scaffold16121 I 2255 I 8317 e oryLat2.chr1 8946071 4387 - 39973033 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=36536.000000 s hg19.chr4_gl000194_random 61127 65 + 191469 TTGGCATCTCCAGAAAGCAG---GAGGTAG-GGCATGGCTCTGTGACAGATGTTCC-ATGACAGGGAGGA s panTro2.chr4_random 3248196 65 + 6711082 TTGGCATCTCCAGAAAGCAG---GAGGTAG-GGCATGGCTCTGTGACAGATGTCCC-GTGACAGGGAGGA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11814713 66 + 72422247 TTGGCATCTCCAGAAAGCAG---GAGGTGG-GGCAGGGCTCTGAGACAGATGTCCCTGTGACAGGGAGGA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3774015 66 - 110119387 TTGGCATCTCCAGAAAGCAG---GAGGTGG-GACATGGCTGTGTGACAGATGTCCCTGTGACAGGGATGA i rheMac2.chr15 C 0 C 0 s pteVam1.scaffold_15842 2365 70 - 27272 TTGGGGCTTCCCAGGAGCGGTACGGGTTAGAAGCATAGCTTCGTGACGGGCATCTCTGTGGTTAGTAGGA i pteVam1.scaffold_15842 C 0 N 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I e calJac1.Contig1178 231541 67 - 516707 I a score=13024.000000 s hg19.chr4_gl000194_random 61192 24 + 191469 TTGGAGGGACAGAGGGACGTGCTC s rheMac2.chr15 3774081 24 - 110119387 TTGGAGGGACAGAGGGGTGTGCTC i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11814779 24 + 72422247 TTGGAGGGATAGAGGGGCGTGCTC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3248261 24 + 6711082 TTGGAGGGACAGAGGGACGTGCTC i panTro2.chr4_random C 0 C 0 s calJac1.Contig1178 231608 17 - 516707 TCGGGGGGGCAGGGCAG------- i calJac1.Contig1178 I 67 N 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=212429.000000 s hg19.chr4_gl000194_random 61216 437 + 191469 AGGGGCTGAGGGGCAGACGAGGCCACCAAAGGGCACCTTGGACACTGGATGGCCCCAGGAAGGCCCCTGAACCCCATCCTGATTGATCCAGGGCCAGTGACCTTGGCCCAGACTGCAGGCCTGGGAATTCAGGTTCCtttagtttcttaagaaactactatactcctttttggcatagctgtacgattttacattcccaccagtcatgtgtgaaagctccagtttttactcatgctccccagcgtttgatgttttatttttattttagctattctgatatatatgt--------------------------gttagtcattgtggtcttaatttgcaaatttctaatgactaatgatatttaacatcttttcctgttcataattaaataccatctgtattccttttcaCATATCATTAGCACAAATGTGAGATATCAGAACAAAATTTTTCACACAACTTCA s rheMac2.chr15 3774105 437 - 110119387 AGGGGCTGAGGGGCAGACGAGGCCACCAAAGGGCACCTTGGACACTGGAGGGCCCCAGGAAGGCCCCTGGACCCCATTCTGATTGAT-CAGGGCCAGTGACCTTGGCCCAGACTGCGGGCCTGGGGACTCGGGTTCCtttagtttcttaagaaactactatactcctttttggcatagctgtacgattttacattctcaccagtaatgtgtgaaagctccagtttttactcatgctcctcagcgtttgatg-----tttttattgtagccattctgatatatatatatatatatatatatatatatgtattaataagtcattgtggtctttatttgcaaatttctaatgactaatgatatttaacatctttttctgttcataattaaatgccatctgtattccttctcaCATATCACTAGCACAGGCATGAAAAATCAGAG--------------------CA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11814803 437 + 72422247 AGGGGCTGAGGGGCAGATGAGGCCACCAAAGGGCACCTTGGACACTGGATGGCCCCAGGAAGTCCCCTGAACCCCATCCTGATTGATCCAGGGCCAGCGACCTTGGCCCAGACTGCAGGCCTGGGGACTCGGGTTCCtttagtttcttaagaaactactgtactcctttttggcatagctgtacgattttacattcccaccagtaatgtgtgaaagctccagtttttactcatgctcctcagcgtttgatgttttatttttattttagccattctgatatatatgt--------------------------gttagtcattgtggtcttaatttacaaatttctaatgactaatgatatttaacatcttttcttgttcatagttaaataccatctgtattccttttcaCGTATCATTAGCACAACCGTGAAAAATCAGAACAAAATTTTTCACACGACTTCA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3248285 437 + 6711082 AGGGGCTGAGGGGCAGACGAGGCCACCAAAGGGCACCTTGGACACTGGATGGCCCCAGGAAGGCCCCTGAACCCCATCCTGATTGATCCAGGGCCAGTGACCTTGGCCCAGACTGCAGGCCTGGGGACTCAGTTTCCtttagtttcttaagaaactactatactcctttttggcataactgtacgattttacattcccaccagtcatgtgtgaaagctccagtttttactcatgctccccagcgtttgatgttttatttttattttagctattctgatatatatgt--------------------------gttagtcattgtggtcttaatttgcaaatttcgaatgactaatgatatttaacatcttttcctgttcataattaaataccatctgtattcctcttcaCATATCATTAGGACAAATGTGAAAAATCAGAACAAAATTTTTCACACAACTTCA i panTro2.chr4_random C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=49011.000000 s hg19.chr4_gl000194_random 61653 77 + 191469 AAATTTTTAG----AACAATACTCAAGGGAAAAGG--------TGTTTATTTAGAACAATGAAAACAATGAGACATTAACTTCCAGCTT s panTro2.chr4_random 3248722 77 + 6711082 AAATTTTTAG----AACAATACTCAAGGGAAAAGG--------TGTTTATTTAGAACAATGAAAACAAAGAGACATTAACTTCCAGCTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11815240 77 + 72422247 AAATTTTTAG----AACAATACTCAAGGGAAAAGG--------TGTTTATTTAGAACAGTGAAAACAATGAGACATTAACTTCCAGCTT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3774542 77 - 110119387 AAATTTTTAG----AACAATATTCAAGGGAAAAGG--------TGTTTATTTAGAACAATGAAAACAATGAGACGTTAACTCCCAGCTT i rheMac2.chr15 C 0 C 0 s proCap1.scaffold_78521 5393 86 - 8048 AAATTGTTAAGTCTATCAATATCAGAGAGAAGAGGCAAAACAATATTCATTTAAAACAATAAAAAACAAAA---ATTAATTTTTAGCTA i proCap1.scaffold_78521 N 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=43044.000000 s hg19.chr4_gl000194_random 61730 68 + 191469 -AAATAAAGTTGATT-GTGTGCATAAAAATGGTGAAAATATTGGACTTTCTTGGCAAAAGAAGAAAGGGG s speTri1.scaffold_121038 629 62 - 8389 -AATTAAAGTTG------GTATGTAAAATTGCTCAGAATATTCATATTTCTGGGAAAGAGTAGAAA-AAA i speTri1.scaffold_121038 N 0 C 0 s rheMac2.chr15 3774619 68 - 110119387 -AAATAAAATTGATT-GTGTCTATAAAAATGGTGAAAATATTGTACTTCCTTGGCAAAAGAAGAAAGGGG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11815317 68 + 72422247 -AAATAAAGTTGATT-GTGTGCATAAAAATGGTGAAAATATTGGACTTCCTTGGCAAAAGAAGAAAGGGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3248799 67 + 6711082 -AAATAA-GTTGATT-GTGTGCATAAAAATGATGAAAATATTGGACTTTCTTGGCAAAAGAAGAAAGGGG i panTro2.chr4_random C 0 C 0 s proCap1.scaffold_78521 5479 69 - 8048 AAAATAGAACTCAGTAATATACATAAAGGTTGTCAGAATATTGTAATTT-GGAGCAAAAGAGGAGGAAAA i proCap1.scaffold_78521 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=103487.000000 s hg19.chr4_gl000194_random 61798 119 + 191469 AAGACTTTATATTTTCTGACATAATATTCATCATTTGTCTTTGGTT----TGTGTA----TTATGTGTATGATTTTGAA-AAAA-ATGCATCAAAGATATAA----CTTTCTGGTGTTTGCTTTGATATTATC s speTri1.scaffold_121038 691 130 - 8389 AACACTTGCTATTTTCTAAAAAAGTATTCATCTTTTATCTGTTGTTTAGATGTTTATTT-TTACCTGCATGAACCTGGA-AAAAAATGTATCAAGAATATAATTTTCTTTCTGATG-CTGCTTTGATGTTAGC i speTri1.scaffold_121038 C 0 C 0 s rheMac2.chr15 3774687 118 - 110119387 AATACTTTATATTCTCTGAAATAGTATTCATCATTTGTCTTTGGTT----TGTTTA----TTAAGTGTATGATTTTGAA-AAAC--TGCATCAAAGATGTGA----CTTTCTGGTGTTTGCTTTGATATTATC i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11815385 114 + 72422247 AAGACTTTATATTTTCTGAAATAATATTCATCATTTGTCTTTGGTT--------TA----TTATGTGTATGATTTTGAA-AAAA--TGCATCAAAGATATAA----CTTTCTGGTGTTTGCTTTGATATTATC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3248866 118 + 6711082 AAGACTTTATATTTTCTGACATGATATTCATCATTTGTCTTTGGTT----TGTGTA----TTATGTGTATGATTTTGAA-AAAA--TGCGTCAAAGATATAA----CTTTCTGGTGTTTGCTTTGATATTATC i panTro2.chr4_random C 0 C 0 s proCap1.scaffold_78521 5548 120 - 8048 AAGA----ATATTTACTGAAGAAAT----ATCAATTTCCTCTTGTTTAGATG-TTATTTGTTACCTTTATGCTTCTAAC-AAAA--TAAATCAAGGATGT-ATTTTCTTTCTGTTGTTTTGTTAGATACTAAC i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 82553 128 - 93253 AGGACTTCATATTT-CTGAAGTTTT--CCATCATTAGTCTTTTGTGTGGGTGTTTATTTCTTACATGTATGATCATGACAAAAA--TGCATCAAGGTTATAATTCTCTTTCTGATATTTGCTTTGAAATTAGC i dasNov2.scaffold_14948 N 0 I 514 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=22801.000000 s hg19.chr4_gl000194_random 61917 44 + 191469 CTTGCAAACAGAAAAG---------TTGGCACATGTTTCTGTATAAAACTGGT----- s speTri1.scaffold_121038 821 43 - 8389 CTTTCCTATTGCTAGG---------GCATTGCAT-TTTGTATAGAAAACTGAT----- i speTri1.scaffold_121038 C 0 C 0 s rheMac2.chr15 3774805 44 - 110119387 CTTGCAAACAGAAAAG---------CTGGCACATGTTTCTGTATAAAACTGGT----- i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11815499 44 + 72422247 CTTGCAAACAGAAAAG---------TTGGCACATGTTTCTGTATAAAACTGGT----- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3248984 44 + 6711082 CTTGCAAACAGAAAAG---------TTGGCACATGTTTCTGTATAAAACTGGT----- i panTro2.chr4_random C 0 C 0 s proCap1.scaffold_78521 5668 36 - 8048 GTTGTGATCAGAAAAG---------ATGTTGTGTGTTTCT--------TTGTA----- i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 83195 53 - 93253 CTAGCAGCCAGGAAAGTAAGATAAAACAGTATGTACTTCTG-----ACCTGAACAAGC i dasNov2.scaffold_14948 I 514 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=-19381.000000 s hg19.chr4_gl000194_random 61961 73 + 191469 CAAAGTTGGCCTAGGAATGATCT----------------------------------------------------------------------------------------------------------------------------------T---------------------ACA-TTGTACT---------------------------TT------------CACTTTACAT-----------------------CAT-----------------------------------------ACTGTAAGAGTT---------------------------------------------------------------TAATAATAGCTA s speTri1.scaffold_121038 864 70 - 8389 CATATATGGCTTCAAAACGTGTT----------------------------------------------------------------------------------------------------------------------------------T---------------------ACA-TTGGGCT---------------------------TT------------TTCTT-ACAT-----------------------T-T-----------------------------------------AGTACAAGGTGT---------------------------------------------------------------TTTGAATAG-TA i speTri1.scaffold_121038 C 0 C 0 s tupBel1.scaffold_117845.1-90097 40300 211 - 90097 --------------GGATGATCT----------------------------------------------------------------------------------------------------------------------------------TTGGAGACTTGACTATGACTGGGCA-GTGTGCTCATAACCCTGGGCTGGCTGAAACTAGGTA------------TAGTTCACAG-----------------------CATCAAGTCTCAAATGGGGGTTCTGTCTCTTTCTCTGTCTCTCAATTATGGAAGTTATAAATAAATAAACTAAACAAGCAAAAAAGATGACTTAGAAGCAAGTTTTCAGTATGGTTTTATAAGATTTTTTA i tupBel1.scaffold_117845.1-90097 N 0 C 0 s panTro2.chr4_random 3249028 73 + 6711082 CAGAGTTGGCCTAGGAATGATCT----------------------------------------------------------------------------------------------------------------------------------T---------------------ACA-TTGTACT---------------------------TT------------CACTTTACAT-----------------------CAT-----------------------------------------ACTGTAAGAGTT---------------------------------------------------------------TAATAATAGCTA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11815543 73 + 72422247 CAAAGTTGGCCTAGGAATGATGT----------------------------------------------------------------------------------------------------------------------------------T---------------------ACA-TTGTACT---------------------------TT------------CACTTTACAT-----------------------CAT-----------------------------------------ACTGTAAGAGTT---------------------------------------------------------------TAATAATAGCTT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3774849 73 - 110119387 CAAAGTTGGCCTAGGAGTGTTAT----------------------------------------------------------------------------------------------------------------------------------T---------------------ACG-TTGTACT---------------------------TT------------CACTTTACAT-----------------------CAT-----------------------------------------ACTGTAAGAGTT---------------------------------------------------------------TAACAATAGCTG i rheMac2.chr15 C 0 C 0 s micMur1.scaffold_129208 0 74 - 1211 CAAAGAGGGCCTAGAAACAAGTT----------------------------------------------------------------------------------------------------------------------------------T---------------------ACACTTGTATT---------------------------TT------------CACTTTACTT-----------------------CAT-----------------------------------------ACTACGAGATTT---------------------------------------------------------------TTACAATAGCTA i micMur1.scaffold_129208 N 0 C 0 s proCap1.scaffold_78521 5704 237 - 8048 -AAAGATAGCCTGGGAATGAGTTCCGGTACTTTCATGTAGATAACACTAATGAAGCTAAACCcactggtactgagtcaattataactcacggtgaccctatagacagagcagaactgcatcatagagtttacaacgaacacctggtggattcga---------------------act-gctgact---------------------------ttttggttagcaGCCataacacttaatcattacgaggatttccagatcat-----------------------------------------gtcataggactc---------------------------------------------------------------tgataatagctg i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 83248 79 - 93253 CAAAGGTAGACTAGACATGAGTT----------------------------------------------------------------------------------------------------------------------------------A---------------------ACT-TTTTGCT---------------------------TTCTTA--------CACAATTCTTAA---------------------AAT-----------------------------------------ACTGTACAATTC---------------------------------------------------------------TTAAAATACCTA i dasNov2.scaffold_14948 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=90725.000000 s hg19.chr4_gl000194_random 62034 87 + 191469 AGGCATCAGCATTG-ATGTGGACTTA-TTATACCTA-TTCAAGAGGTGGT----G-TGAGGTTTAG-GAGAGTTATGTGCCCTTTATCATAAAACA s micMur1.scaffold_129208 74 89 - 1211 AGGCTTTGGTATTGTTTGTGGACTCA-TTATCCCC--TTGTAGAATTGGT----GATTGGGTCAAGTGAGAGTCAAGTGCTCATTATCATAAAATA i micMur1.scaffold_129208 C 0 C 0 s rheMac2.chr15 3774922 86 - 110119387 AGGCATCAGCATTG-ATGTGGACTTA-TTATCCCTA-TTTAAGAGTTGGT----G-TGAGGTTTAG-GAGAGTTATGTGCTC-TTATCATAAAAGA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11815616 87 + 72422247 AGGCATCAGCATTG-ATATGGACTTA-TTGTCCCTA-TTTAAGAGGTGGT----G-TGAGGTTTAG-GAGAGTTATGTACCCTTTATCATAAAACA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3249101 87 + 6711082 AGGCATCAGCATTG-ATGTGGACTTA-TTATCCCTA-TTCAAGAGGTGGT----G-TGAGGTTTAG-GAGAGTTATGTGCCCTTTATCATAAAACA i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_117845.1-90097 40511 81 - 90097 AGGCATCGGCATCG-GTGAGGACTCA-TACTTCCTG-TTC-AGTATTGGT------TGA----TAG-GAGGGGTAAGTGTTCACTGTCATCAAGTA i tupBel1.scaffold_117845.1-90097 C 0 C 0 s speTri1.scaffold_121038 934 79 - 8389 AGGCATCAACACTG-AGGTGAAC--A-ATTTGTCTG-CTTTAGGATTGGTTGACG-TGAGGGTTAG-AAAGGATAAAGG----------TAAAGTA i speTri1.scaffold_121038 C 0 C 0 s sorAra1.scaffold_232235 39397 89 + 105198 AGGTATAACCATTG-ATGCTGACTCA-GCATGGCTG-TTTAAGGATTAGTATATA-TGAAGCTTAC-AGATGTTAAGTACT--TAGTTACAGGACA i sorAra1.scaffold_232235 N 0 C 0 s proCap1.scaffold_78521 5941 88 - 8048 aggcattagtgtga-ata-----tcatttatccccaattttagggttgatcaaac-tgaggtttag-aaggcttaggtgctcacaatcataagctC i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 83327 85 - 93253 AGGCATCAGTGGGA-AAa-----tca-ttatcccca--ttttaggtccgtggaac-taaagtttag-aaatgttaagtgctcacaatcataAGAAA i dasNov2.scaffold_14948 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=129683.000000 s hg19.chr4_gl000194_random 62121 77 + 191469 AATCTATGAAGCATTTATATAAAA-ACCCAGTATTTCTGGTTTCAAATTCAG-TACTGTGCCGTCTGCTT--GATAG--ATTT----- s micMur1.scaffold_129208 163 79 - 1211 TATCTATGAAGCACTTATATATGA-ACTCAGAATTTCATATTTCAAATTCAG-TATTATATCTTCTGTCTTAGACAT--ATTT----- i micMur1.scaffold_129208 C 0 I 2 s rheMac2.chr15 3775008 77 - 110119387 AATCTATAAAGCATCTATATAAAA-ACTCAGTATTTCTGGTTTCAAATTCAG-TACTGTGCCATCTGCTT--GATAG--ATTT----- i rheMac2.chr15 C 0 I 2 s ponAbe2.chrUn 11815703 73 + 72422247 AATCTATGAAGCATTTACATAAAA-ACCCAGTATTTCTGGTTTCAAATTCAG-TACTGTGCCGTCTGCTT------G--ATTT----- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3249188 77 + 6711082 AATATATGAAGCATTTATATAAAA-ACCCAGTATTTCTGGTTTCAAATTCAG-TACTGTGCCGTCTGCTT--GATAG--ATTT----- i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_117845.1-90097 40592 81 - 90097 TCTCCAAGAACCATTGATATAAAATATCCTGAATTTCTGTTTTTAAATCTAGTTATTTTGTCCTCTGCCT--CATAGGTATTT----- i tupBel1.scaffold_117845.1-90097 C 0 C 0 s speTri1.scaffold_121038 1013 75 - 8389 TATCTCTGAAGCATTGATAGAGAC-ACCTGGAATTTCTGGTTTTAAATCCCA-AAC--TGCTCTCTACCT--CAGAC--ATTG----- i speTri1.scaffold_121038 C 0 I 4 s pteVam1.scaffold_4612 43123 79 - 123871 attttatgaaaaatttatataaaa-ccccagaatttctgttttcaaatccag-tgttctgccctctgcCTTGGACAT--ATTT----- i pteVam1.scaffold_4612 N 0 I 2 s sorAra1.scaffold_232235 39486 77 + 105198 AATCTATTCAGCATCTGTGC-CAA-CCCCAGAATTTCTG-ATTCATACTCAG-TAGTCTGTcttctgttttaaatat--attt----- i sorAra1.scaffold_232235 C 0 I 2 s proCap1.scaffold_78521 6029 76 - 8048 ----TATTACATACTTTTATAACA-A--CAGAATTTCTGGTTTCAAATTCTT-TACTCTGTCTTCTGCCT--CAGAA--ATTATTTAA i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 83412 68 - 93253 AAAGTATGAAGTATTTATATGAAA-GCCCAGAATTTATGGTTTCAAA---------------TGCTGTCT--CAGAA--ATTATTTAA i dasNov2.scaffold_14948 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=189890.000000 s hg19.chr4_gl000194_random 62198 112 + 191469 GTTCGCAGGTTAG------AGAC-------ATTTTATTGCA-----TAACTTCCATG----AAATATCACAGTTGTACTCTTGACT-ATGTTTGAATCACAAAAAGACTTTAATCTGCACTCAGTTCTTGTAACT s micMur1.scaffold_129208 244 122 - 1211 GCTTGCAGCTTAG------AGGCAGTA-GAATTCCACTGCATAAG-TAACATCAATG----AAATATCATAGTTGTACTTTTGACT-TTGTTTAAAATACAAAGAGACTTTAATCTGCACCCAGTTCTTTTAACT i micMur1.scaffold_129208 I 2 C 0 s rheMac2.chr15 3775087 111 - 110119387 GTTGGCAGGTTAG------AGAC-------ATTTTATTGCA-----TAACTTCAACG----ATATATCACAG-TGTACTCTTGACT-ATGTTTAAATCACAAAAAGCCTTTAATCTACACTCAGTTCTTTGAACT i rheMac2.chr15 I 2 C 0 s ponAbe2.chrUn 11815776 109 + 72422247 GTTTGCAGGTTAC------GGAT-------ATTTTATTGCA-----TAACTTCAATG----AAATATCACAGTTGTACTCTTGACT-ATGTTTAAATCAC---AAGACTTTAATCTGCACTCAGTTCTTTTAACT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3249265 112 + 6711082 GTTCGCAGGTTAG------AGAT-------ATTTTATTGCA-----TAACTTCCATG----AAATATCACAGTTGTACTCTTGACT-ATGTTTGAATCACAAAAAGTCTGTAATCTGCACTCAGTTCTTGTAACT i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_117845.1-90097 40673 113 - 90097 GAGACTAGATTGGAATAGTAGAA-------GTTTCACTATA-----TAA-----ATA----GAATATCATAGTTGTTTTTGTGACT-ACATTTAACATATAAAGAGACTTCAATCTGTGGTCAGGTCTTTTAACT i tupBel1.scaffold_117845.1-90097 C 0 C 0 s speTri1.scaffold_121038 1092 116 - 8389 GCTTGCAGGTTAG------AGGCAGCAGGAACTCCACTATATAAGATAACAGCAATG----AAATAT-ATAC-TGTAATTTTCACT-ATTTTTAAGATGT--AGAGACTTTAATCTATACTCAGATCTTTT---- i speTri1.scaffold_121038 I 4 C 0 s pteVam1.scaffold_4612 43204 113 - 123871 GCTCACAGGTTGG------AAGCAGTAGGAATTCCACTGTTTTAGATAACACCAATC----AAATATCGAAGTTGTATTCTT-GTTCGTGTTTAAGATTCAAAGAAATTTTAATGT-----------TTTTAACT i pteVam1.scaffold_4612 I 2 C 0 s eriEur1.scaffold_347382 56178 112 - 97950 GCTTGCAGGTCAG------AAACAGTTGCAATTCCAC-TCCTTAAATAaca----------aaatatag----ttttttttt-act-atgtttaatactgaaaaaatatttaatttgcaTTCATGTCTTTTAACT i eriEur1.scaffold_347382 N 0 C 0 s sorAra1.scaffold_232235 39565 123 + 105198 acttgCAGGTTAG------AAGCAGTCAGAACAGTACTTTCTTAAGTACCATCAGTG----AAATATCACATCTACCTTTTA-ATT-ATGCCTAAGATACCAAGAAACTTTAATCTTCACTCAGCTCTTTTAACT i sorAra1.scaffold_232235 I 2 C 0 s proCap1.scaffold_78521 6105 119 - 8048 GCTAACAAGTGAG------AAGCAGAAAGAAGCTCATAGAATTAGAAAACATCAA------AAATATCATAAT--TAGTTTTTCTT-GTGTTTAAGATACAAAAAGACTTTAATTTCAC-TCAGGTCTTTTAACA i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 83480 126 - 93253 TTTCACAGGCTAG------AGGCAGTAGGGATTCCAATGTAATAGGTAACATCAGTGAAACAAGGGTTGTACT--CTTTTCTGATT-ATTTTTAAGATACAAACAGACTTTAATCTCCTGTCAGGTCTTTTAACT i dasNov2.scaffold_14948 C 0 C 0 e oryLat2.chr1 8946071 4387 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=900879.000000 s hg19.chr4_gl000194_random 62310 314 + 191469 AAAATCTTCAGTTTGAATATGAATTTCACTTAAAGAACATCCCTAGAAATTTCAGAGAGAA-----AAAGACTTTACTTGTAGAATACAATCTGCATTTGCTTTGACAA--------CTAGTTAGTTCACATATGTAAAATAA-----GTCTACCTGTCTGTATGCATAATTAAGATGTAACAG-TAGTGTGGTAATGACTTG----TTAAAGCAATTAGAATGGCAGTGGATCATG---GCACAATTTACCTTAAAAGC---------CGTGAGCAGAATACATCACAA--------GCTATGATACAATGAAT------------AGTCAT-TAGGTTTAAAGTAGTATCCACATATAAAAACACAAA s dasNov2.scaffold_14948 83606 316 - 93253 AAAGGCTTCAGTATGAAAATTAATTTCATTCACAGAATACTCCTAGAAATTTTATAGAGAAAATT-AAGCCCTTTACTTGCATAATACAATCTACATTTGCTTTGACTA--------CCAATTAGGTTACATAAGTAAAAGAA-----GTGTACCTTTCCATA--TATAATTAAGATGCAACAC-TAGAATAACATTGACTGGTTGATTAAAGCAATTAGGAAGGTAGTGCATCATG---GTACTGTTTACCTTAAGAGG---------TGTGAGCAGAATAGATCACAG--------GCTATAATACA----AT------------AGACAT-TGAGATCAAAATAATTTCCCTATAGTAAAACACAAA i dasNov2.scaffold_14948 C 0 C 0 s proCap1.scaffold_78521 6224 315 - 8048 GAAAGCTTCATTTTGAATATTAATTTCATT---AAAATGTTCTGACATGCTTTAGAGAGAAAATTAAAACTTTTTTATTACAATATACCATGTGCATTTGCTTTGACAA--------CTGATTAGGTTACATAGGTAGAATAA-----GCCTACTTATCTATATGTATAATTAAGAAGCAGCAC-TTTTATAACACTGACTGATTAATTAAAGCAATTAGAATGGTAGTAGATTATG---GCACAACATACCTTAAAAGG---------CATGAGCAGAAAATATCACAG--------GCTGT-GTATA----AT------------GATCAC-TGAGTTCAAAGTAATTTTCTCTTGGCAAAACATAGA i proCap1.scaffold_78521 C 0 C 0 s sorAra1.scaffold_232235 39688 294 + 105198 AAATGCTTCAGTTTGAATATTAATTATGTTT-AATGATAATCTTAGAAAATTCAGAGGGAAAATT-AAGGGCTTTACCTGCAAAATAAAATCTATACTTGCTATGACAA--------CTAATtagtttacaaatataaaataa-----atttgtctttcTGTATATATAATTAAGATGCAATGCTTGGGGTAGCATTGACTGCTTAATTATAGCAAATAGGATAGTAGTGGATTATG---ATACCATTTACCTTAAGAGA---------TGTGAGCGGATTATATCATAAG-------GCTATAAGAGATGAGAT------------AGTTAT-GGGGGTT----------------------------- i sorAra1.scaffold_232235 C 0 I 174 s eriEur1.scaffold_347382 56290 303 - 97950 AAAAGCTTCAGTTTGaatattaattatatttaaaagcTATTCCT--AAgattcaga-gaaaaatt-gaagccTTTAATTACAGAATAAAATCTTCATTTGCTTTGACAA--------CTAATTAGTTTACCTATGTAAAATAT-----GTTTACCTTTCtgtatatataattaaattgCAATGC-TAGGACAGCACTGACTgcttaattaaagaaattaag---gTGGTGGATCATG---GCAC-----AACTTAAGA-----------------CTGAATAAATCAGAA--------ACTATGATACACTAGAT------------AGTCTT-TGAGTTGAAAATACTTTTAATACACAACAAAACCAA i eriEur1.scaffold_347382 C 0 N 0 s pteVam1.scaffold_4612 43317 320 - 123871 AAAAGCTTCAGTTTGAATATGAATTTCACTTAAAGAATATTCCTAGAAATTTTAGAAAGAAAATT---AGTCATTACTTGCAAAATACAATCTGCATTTGGTTTGACAA--------CTAATTAGTTTACATATATAAAATAA-----GCCTATCTTTCTGTATATATAATTAAGGTGCAATGC-TAGAATAGCATCGACTGCTTAATTAAAGCAATTAGGATAGTAGTGGATCATG---GCACAGCTTACCTTGAGATG---------TGTGAGCAGAATGCATTATGG--------ACTATGATACAACAGAT------------AGTCAT-TGAGTTCAAAATACTTTTCGCATAATAAAACACAAA i pteVam1.scaffold_4612 C 0 C 0 s speTri1.scaffold_121038 1208 294 - 8389 -AAAGCTTCAGTTTGGatattaattttattt-aaaaatattCCCAGAAATTTGAGAAGAAA-ATT-AAAGTCTCTACTCACAGAATATGATCTGTATTTGCTTTGACAA--------CTAATTAATTTACATATGTAAAATAA-----GTCTACCTTCCTGCAGGCATAATTAAGAGTCAGCAC-TAGTGTAGCATTGACTAGTTAATTAAAGCAATTAGAACTAGAGTGGATCATG---ACACACTTTACTTCAAGAGA---------TATGAGAAGAATACATCACAG--------GCTCTGATATAATAAAT------------ATTCATATAGTTCTGAA-------------------------- i speTri1.scaffold_121038 C 0 N 0 s tupBel1.scaffold_117845.1-90097 40786 305 - 90097 AAAAACATCAGTTAGAATATTAGTTTCACTTAAACAATATCCTTGGAAATTTTAGAGAAGAGATT-AAAGCCTTCATCTGCACAATGTATAATTTATTTGCTGGGGTGA--------CTTATTAGTTTACACATGGAAAATAA-----GCCTATCTTTCTGTACGTGTAATTGAGATGCAACAC-TCGTCTAGCACAGTTTAA----TCAAAGCAGTTAGGATGGTGGTGGATGGTG---GCACAATGTACCTTAAGAGG---------CATGAACAGAATATATAACAC--------TCTATGATAGAACA-------------------------GTTCTAAATATTTTCCACA-AAGAAAACCCAGA i tupBel1.scaffold_117845.1-90097 C 0 C 0 s panTro2.chr4_random 3249377 314 + 6711082 AAAATCTTCAGTTTGAATATGAATTTCACTTAAAGAACATCCCTAGAAATTTCAGAGAGAA-----AAAGACTTTACTTGCAGAATACAATCTGCATTTGCTTTGACAA--------CTAGTTAGTTCACATATGTAAAATAA-----GTCTACCTGTCTGTATGCATAATTAAGATGTAACAG-CAGTGTGGTAATGACTTG----TTAAAGCAATTAGAATGGCAGTGGATCATG---GCACAATTTACCTTAAAAGC---------CATGAGCAGAATACATCACAA--------GCTATGATACAATGAAT------------AGTCAT-TAGGTTTAAAGTAGTATCCACATATAAAAACACAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11815885 318 + 72422247 AAAATCTTCAGGTTGAATATTAATTTCACTGAAAGAACATCCCTAGAAATTTCAGAGAGAA-----AAAGACTTTACTTGCAGAATACAATCTGCATTTGCTTTGACAA--------CTAGTTAGTTCACATATGTAAAATAA-----GTCTACCTGTCTGTATGCATAATTAAGATGTAACAG-TAGTGTGGTAATGACTTGTTAATTAAAGCAGTTAGAATGGCAGTGGATCATG---GCACAATTTACCTTAAAAGC---------CATGAGCAGAATACATCACAA--------GCTATGATACAATAAGT------------AGTCAT-TAGGTTTAAAGTAGTTTCCACATATAAAAACACAAA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775198 307 - 110119387 AAAATCGTCAGTTTGAATATGAATTTCACTT-AAGAACATCCCTAGAAATTTTAGAGAGAA-----AAAGACTTTACTTGCAG-ATACAATCTGCATTTGCTTTGACAA------------TTAGTTCACATATGTAAAATAA-----GTCTACCTGTCTGTATGCATGATTAAGATGTA------AGTGTGGTAATGACTTGTTAATTAAAGCAATTAGAATGGTAGTAGATCATG---GCACAATGCACCTTAAAAGC---------CGTGAACAGAATACATCACAA--------GCTATGATACAATAAAT------------AGTCAT-TGGGTTGAAAGTAGTTTCCACATATAAAAACACAAA i rheMac2.chr15 C 0 C 0 s micMur1.scaffold_129208 366 325 - 1211 AAAAGCTTCAGTTTGAATATTAATTTCATTTAAAGAATATTCCTAGAGATTTTAGAGAGAAAATT-AAAGCCTTTACTGGCAGAATA-AATCTGTATTTGCTTTGGCAA--------CTAATTAGTTTACGTATGTAAAGTAA-----GTCTACCTTTCTGTATTCATAATTAAGATGCAACAC-TAGTGTAGCATTGACTGGTTAATTAAAACAATTAGGATGGTAGTGGATCATG---GCATGATTTACCTTAAAATCTGCTTATGGCATGAGCAGAATACATTATGG--------GCTATGATACAATTAAT----------------AT-TGCCTTTAAAGCACTTTTCACAT-TAAAAACAGAAA i micMur1.scaffold_129208 C 0 C 0 s oryLat2.chr1 8950458 329 - 39973033 aaaatcttca-tcagaaactaaattt-------aaatcagctgcaaacatttgacagataa---T-AAAGATTTCA----CAAAATATAGTTG----CTGatttgtggaagttgtttctgatttgtgtaaacttgtaaaaggacatttatgtattttcctGCA---ACAAGGGTGATT-------TAGTCAGGCATCAGTTAAATG-TGAGCACAGATAATGTTCCCCtgtgttaaaaatacacaatgaatctggattta---------tgtaaaaacaaaataagataaatctttttgcCCTGAAACATGATCTGAGACTTGGTTGAATTCT-CGGTGTTAAAATGGTgttcaatgaaaaaaactgtag i oryLat2.chr1 I 4387 I 4 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=32068.000000 s hg19.chr4_gl000194_random 62624 44 + 191469 GCATATTTTAGCTCTTT---AAA--------TGAAAGCTTC--ATTCAG--TCAATATT s micMur1.scaffold_129208 691 52 - 1211 CGGCATTTTAGCCCttt---aaaatttctttttaaatttta--atttaa--tttatttt i micMur1.scaffold_129208 C 0 N 0 s rheMac2.chr15 3775505 35 - 110119387 GCATATTTTAGCCCTTT---AAA--------TG-----------TTCAG--TCAATATT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11816203 44 + 72422247 GCATATTTTAGCCCTTT---AAA--------TGAAAGCTTC--ATTCAG--TCAATATT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3249691 44 + 6711082 GCATATTTTAGCCCTTT---AAA--------TGAAAGCTTC--ATTCAG--TCAATATT i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_117845.1-90097 41091 41 - 90097 GTGTATTTAAAAACACT---AAA-------------GTTTC--ATTTATCCTTAACACT i tupBel1.scaffold_117845.1-90097 C 0 C 0 s pteVam1.scaffold_4612 43637 44 - 123871 GCATACTTGAGTGCTTT---AA---------TTAAAGTTTC--ACTCATTCTTAACAT- i pteVam1.scaffold_4612 C 0 C 0 s proCap1.scaffold_78521 6539 46 - 8048 GCATATTTGAATCCTTT---AAA--------TTCAATCTTC--ATTCATTCTTAGCATT i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 83922 47 - 93253 GCATATTTGATTCTTTT---AAA--------TTAAAGCTTCATATTTATTTTTA-CCTT i dasNov2.scaffold_14948 C 0 C 0 s oryLat2.chr1 8950791 49 - 39973033 gcttttattaaattatttacaaa--------taaacaactcggtttcat--tgaatctt i oryLat2.chr1 I 4 C 0 e sorAra1.scaffold_232235 39982 174 + 105198 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=40518.000000 s hg19.chr4_gl000194_random 62668 97 + 191469 GGTCTTCCTGTAGATGCATT-----TATG--------AAACAGAA--------CCACAAA-------ACATAC----AGCT------TACCCGCTTCTCAAAACTCAT-----TGCACAATAGGTTGAGGGACTTCTCTA s panTro2.chr4_random 3249735 97 + 6711082 GGTCTTCCTGTAGATGCATT-----TATG--------AAACAAAA--------CCACAAA-------ACATAC----AGCT------TAACCGCTTCTCAAAACTCAT-----TGCACAATAGGTTGAGGGACTTCTCTA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816247 97 + 72422247 GGTCTTCCTGTAGATGCATT-----TATG--------AAACAAAA--------TCACAAA-------ACATAT----AGCT------TACCCGCTTCTCAAAACTTGT-----TGCACAGTAGGTTGAGAGACTTCTCTG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775540 105 - 110119387 GGTCTTCTTGTAGATGCATT-----TATGAAGCAAACAAACAAAA--------CCACAAA-------ACATAT----AGCT------TACCTGCTTCTCAAAACTTGT-----TGCACAAAGGATTGAGGGACTTCTCTA i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41132 100 - 90097 AGCCTACTTGTAGATCCATT-----TAGG--------AAGCAAAA--------TAAGATA-------AAACAA----AACTCATACATATCAGCTTCTCAAGATCTGG-----TATACGGCAGA---GGGGTCCCATACA i tupBel1.scaffold_117845.1-90097 C 0 C 0 s pteVam1.scaffold_4612 43681 81 - 123871 --------TGTAGATGCATT-----TAGGG-------AGGAAAAA--------CCAT-------------TAT----AGCT------TAC---CTTCTCAATATTTGT-----TGTACATGATATAAAAGGATTTTCACA i pteVam1.scaffold_4612 C 0 C 0 s proCap1.scaffold_78521 6585 89 - 8048 GGATTACTTATAGATACATTTTTGGTGGG--------GAGGAAGATATTTGCTTCAC------------------------------AAC--ACTTCACAGCACTTGC-----GGCACCGTGGAATGAAGGACT------ i proCap1.scaffold_78521 C 0 I 179 s dasNov2.scaffold_14948 83969 84 - 93253 GGGCAGCTTATAGATGCATTT----TAGG--------GAAAAAAA--------TTAC------------------------------AACTTGCTTTTCAAGACTTGG-----TGCACACCAGATGGAAGGAT-TCCCCA i dasNov2.scaffold_14948 C 0 C 0 s oryLat2.chr1 8950840 88 - 39973033 -----------tgtcgcatt-----tgaa--------ataaaaat--------atacaaatatttttacattttttaaact------aaattgctTGTAGAAGCATTTTAATTAGCAAAATAGGTT-------------- i oryLat2.chr1 C 0 I 66 e sorAra1.scaffold_232235 39982 174 + 105198 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=59249.000000 s hg19.chr4_gl000194_random 62765 58 + 191469 CACCAGGACCTATTA------TTAAAACCAGT-AAGTCCTCAGTGAAAATCA-T-TTATTTGCCCGG s dasNov2.scaffold_14948 84053 60 - 93253 CACTAAGACCTATTA------CTCAAAACCGCAAAGTCCCCCACTAAGAAACAT-TTCTTTGTCTTG i dasNov2.scaffold_14948 C 0 C 0 s proCap1.scaffold_78521 6853 59 - 8048 CAATATGACCTATTG------TTCAAGACAATGAAGTCATCAATCAACATAT-T-GTCTTTGGCTGG i proCap1.scaffold_78521 I 179 C 0 s sorAra1.scaffold_232235 40156 59 + 105198 CAACATGAACTGTTA------TTTAAATCTAC-ATGTCCCCAGTAGAAATTA-TGTGTTTTGTGTGG i sorAra1.scaffold_232235 I 174 C 0 s pteVam1.scaffold_4612 43762 59 - 123871 CGTTGTGACCTGTTA------TTTAAAGCAACAAAGTCCCCACTAGAAAGCA-T-TTCATTGCCTAG i pteVam1.scaffold_4612 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41232 62 - 90097 ACTATGGATCTATAATATTCTTCAGGACAATG-AAGTTCCCAATAAAA--CA-T-TTCTTTGTTTTG i tupBel1.scaffold_117845.1-90097 C 0 C 0 s rheMac2.chr15 3775645 58 - 110119387 CCCCAGGACCTATTA------TTAAAACCAGT-AAGTCCGCAGTGAAAATTC-T-TCATTTGCCTGG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11816344 58 + 72422247 CACCAGGACCTATTA------TTAAAACCAAT-AAGTCCACAGTGAAAATCA-T-TTACTTGCCTGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3249832 58 + 6711082 CACAAGGATCTATTA------TTAAAACCAGT-AAGTCCTCAGTGAAAATCA-T-TTATTTGCCTGG i panTro2.chr4_random C 0 C 0 e oryLat2.chr1 8950928 66 - 39973033 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=25154.000000 s hg19.chr4_gl000194_random 62823 51 + 191469 AGTGTCATCTGATGTGTCTGTTGTAG--------------------GCAGCT-------------GTG-------GCAGTGGTGGGTGGTT s panTro2.chr4_random 3249890 51 + 6711082 AGTGTCATCCGATGTGTCTGTTGTAG--------------------GCAGCT-------------GTG-------GCAGTGGTGGGTGGTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816402 51 + 72422247 AGTGTCATCTGATGTGTCTGTTGTAG--------------------GCAGCT-------------GTG-------GCAGTGGTGGGTGGTT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775703 51 - 110119387 AGTGTCATCTGATGTGTCTGTTGCAG--------------------GCAGCT-------------GTG-------GCAGTGGTGGATGGTT i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41294 78 - 90097 AGCATCCTCTATTGTGTCTGTTTTAGGACACAACAAAGGTGGTTCAGTAGCA-------------GTGGTTAGTTGCAGACGTAGGAGATT i tupBel1.scaffold_117845.1-90097 C 0 C 0 s pteVam1.scaffold_4612 43821 51 - 123871 AGTATCCTCTAATGCTTCTGTCTTAG--------------------GAACAT-------------TTA-------GTGGTAGTAGGTAGCT i pteVam1.scaffold_4612 C 0 I 11 s sorAra1.scaffold_232235 40215 46 + 105198 AGTGACTACTAATGTATTTATCTTTG--------------------GGA------------------A-------CTGGATCTTGGTGACT i sorAra1.scaffold_232235 C 0 N 0 s proCap1.scaffold_78521 6912 49 - 8048 AGTGTCCTTTAATATACTTGTCTCAG--------------------AAACCT-------------GTG-------GC--TGTTTGAGGGTT i proCap1.scaffold_78521 C 0 C 0 s dasNov2.scaffold_14948 84113 61 - 93253 AAGGTCCTGT-GCCCATCTGTCTTAG--------------------GAACCTGTAACATTGGTAGGTG-------GC--TAGTTGAAGGTT i dasNov2.scaffold_14948 C 0 C 0 s oryLat2.chr1 8950994 45 - 39973033 AATATAGTCTGATATTTAACTGGTCT--------------------GTAAAA---------------A-------CCGGAAATaagt---- i oryLat2.chr1 I 66 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=14037.000000 s hg19.chr4_gl000194_random 62874 26 + 191469 TAGTGACACGGACCC-TGCCCACG--TCT s panTro2.chr4_random 3249941 26 + 6711082 TAGTGACACGGACCC-TGCCCACG--TCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816453 26 + 72422247 TACTGAGACGGACCC-TGCCCACG--TCT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775754 26 - 110119387 CAGCGAGACGGAGCC-TGCCCATG--TCT i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41372 27 - 90097 CAGAGTGGTAGACCCTTGCCCACA--TCT i tupBel1.scaffold_117845.1-90097 C 0 C 0 s pteVam1.scaffold_4612 43883 28 - 123871 CAGGAAGAAAGACCC-TCCTGGTGTCTCT i pteVam1.scaffold_4612 I 11 C 0 s proCap1.scaffold_78521 6961 23 - 8048 CA---GGACAGACTG-TGTCCATG--TCT i proCap1.scaffold_78521 C 0 N 0 s dasNov2.scaffold_14948 84174 25 - 93253 CATGGTGATATATCC-TG-CCATA--TTT i dasNov2.scaffold_14948 C 0 I 2 s oryLat2.chr1 8951039 16 - 39973033 -----tggggaccac-tg-----g--tct i oryLat2.chr1 C 0 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=40397.000000 s hg19.chr4_gl000194_random 62900 58 + 191469 ----GTCCAT--CCATCAGTGGGCTAGTGTCTCTCTGGCTGCACCTGAGAAGGGTCT-ATAGGAG s panTro2.chr4_random 3249967 58 + 6711082 ----GTCCGT--CCATCAGTGGGCTAGTGTCTCTCTGGCTGCACCTGAGAAGGGTCT-ATAGGAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816479 58 + 72422247 ----GTCCGT--CCATCAGTGGCCTAGTGTCTCTCTGGCTGCACCTGAGAAGGGTCT-ATAGGAG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775780 58 - 110119387 ----GTCCAT--CCATCAGTGGGCTAGTGTCTCTCTGGCTGCACCTGAGCCTTCTCT-ACAGGAG i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41399 61 - 90097 ----CTCTCTGACCAATGGAGAGCTAATATCCCTTCTACCTCACCTGATCAGGGTCTAAcagaag i tupBel1.scaffold_117845.1-90097 C 0 C 0 s pteVam1.scaffold_4612 43911 53 - 123871 ----ATCTTT--TCGTTAGAGAGCTA---TTCTTCTCAACCTATCTGAGAAGTGTCT---AGAAg i pteVam1.scaffold_4612 C 0 C 0 s dasNov2.scaffold_14948 84201 52 - 93253 ----TTCTAA--CCATTAGGGAGATTACATGCCCCT-----TATCTGAGAAGTGCCT-GAAGAG- i dasNov2.scaffold_14948 I 2 C 0 s oryLat2.chr1 8951055 61 - 39973033 agGGGACCAA--CTGT-GGGGAATCACAACCACCCTGACTCTGCCTGAGGAGGGTCT-GTGGGAG i oryLat2.chr1 C 0 N 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=95427.000000 s hg19.chr4_gl000194_random 62958 129 + 191469 T-TAACGGCATTA-GCATGGGATTCAAAA-GAAATCATCTTGGATTCAAACTTCCATT-TCA-GTATTCATTTCCAG-CTAAGTTTGTGTAGCATGCTTAATGTTTCTGAAGCTCAATTTTA-GTAATGGTAAAG-T s panTro2.chr4_random 3250025 129 + 6711082 T-TAACGGCATTA-GCATGGGATTCAAAA-GAAATCATCTTGGATTCAAACTTCCATT-TCA-GTATTCATTTCCAG-CTAAGTTTGTGTAGCATGCTTAATGTTTCTGAAGCTCAATTTTA-GTAATGGTAAAG-T i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816537 130 + 72422247 T-TAACGGCATTA-GCATGGGATTCAAAA-TAAATCATCTTGGATTCAAGCTTCCATT-TCA-GTATTCATTCCCAG-CTAAGCTTGTGTAGCATGCTTAATGTTTCTGAGGCTCAATTTTA-GTAATGGTAAAGTT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775838 130 - 110119387 T-T-ATGGCATTA-GCATCGTATTCAAAA-TAAATAATATTTGATTCAAACTTCCATT-TCA-GTATTCATTTTCTGACTAAGTTTGTGTAGCATGCTTAATTTTTCTGAGGCTCAATTTTA-GTAACAGTAAAGTT i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41460 126 - 90097 g---gtagtattg-gcaaggctttgaaat-gacataatcttgaattcaaatcccagtt-tca-ttgtttattccctg-tta--tttgtgtagcatgctgaatttttcagaggctcagtttta-gtaacggtaaaatT i tupBel1.scaffold_117845.1-90097 C 0 C 0 s pteVam1.scaffold_4612 43964 109 - 123871 tatggtggcatta-gcatgggctttgaaatgacttaatcatgggttcaaattctagat-tca-atatttatcctagG---AAATTAGGATAG-------------------GTTCAGTCTCA-GTAATGATAAAA-- i pteVam1.scaffold_4612 C 0 C 0 s dasNov2.scaffold_14948 84253 129 - 93253 --TGACAGCAGTACCCATGGGCTTTAAAT-TCCTTAACCTTAGATTCAAAAATCCATTGTCATTTATCTATTTCCTGGGTAGATTTGTGTAGAACAC-AATTTTTTCTGA---TTAGTTTTATGTGTTAGTAAAAT- i dasNov2.scaffold_14948 C 0 N 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=22549.000000 s hg19.chr4_gl000194_random 63087 39 + 191469 ATATCTGCCTAAAAGACAGGGACACATCCCAGTTTTGTG s panTro2.chr4_random 3250154 39 + 6711082 ATATCTGCCTAAAAGACAGGGACACATCCCAGTTTTGTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816667 35 + 72422247 ATATCTGCCTAAA----AGGGACACGTCCCAGTTTGGTG i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3775968 39 - 110119387 ATATCTGCTTAAAAGACAGGGGCACATCCCAATTTTGTG i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_117845.1-90097 41586 16 - 90097 ATGTCTGGCTCAAAGA----------------------- i tupBel1.scaffold_117845.1-90097 C 0 I 138 s pteVam1.scaffold_4612 44073 38 - 123871 -TATTTGCCTAATGGATaggggtaaatccagattttgtg i pteVam1.scaffold_4612 C 0 N 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=114877.000000 s hg19.chr4_gl000194_random 63126 282 + 191469 TTtttttatttttattttattgtatttttcttgagacggagttt-gctcttgctgcccaggctggagtgcaatggtgcaatctcggctcaccacaacctccgcctcctgggttcaagggactctccggcttcagcattctgagtaaatggaattataggtgcccgccaccacgcccagctaattttttgcatttttaatagagac-gggtttcaccatgttggccaggctggtcttgaacccctgacctcagatgatccacccacctcagatgataatcccgcc s panTro2.chr4_random 3250193 283 + 6711082 tttttttaattttattttattgtatttttcttgagacggagttttgctcttgctgcccaggctggagtgcaatggtgcaatcttggctcaccacaacctccgcctcctgggttcaagggactctcctgcttcagcattctgagtaaatggaattacaggtgcccaccaccacgcccagctaattttttatatttttaatagagac-ggctttcaccatgttggccaggctggtcttgaacccctgacctcagatgatccacccacctcagatgataatcccacc i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816702 269 + 72422247 Tttttttatttttatttt-ttttatttttcttgagacggagttttgctctttttgtccaggctggagtgcaatggtgcaatctcggctcaccacaacctccatctcctgggttcaagggattctcctgcttcagcctcctgagtagctgggattacaggtgcccgccaccacacccagttaattgtttgtatttttagtagagacaggttttcaccatgttggccaggctggtcttgaactcctgacctcagatgatccacccgcctcag-------------- i ponAbe2.chrUn C 0 I 7 s rheMac2.chr15 3776007 249 - 110119387 TGCAtttat---------------tttttcttgagatggagttttgctcttgttacgcaggctggagtgcaatggcgtgatctcggctcaccacaacctccaccttccgggttcaagggattctcctgcctcagcctcctgagtagctgggattacaggtgcccgccaccacttccagctaattttttgtatttttagtagagatggggtttcgctatgttggccaggctggtcttgaa---ctgacctcagataatccacctgcct----------------- i rheMac2.chr15 C 0 I 12 e tupBel1.scaffold_117845.1-90097 41602 138 - 90097 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=36856.000000 s hg19.chr4_gl000194_random 63408 67 + 191469 aagtgctgggattacaggtgtgagccaccatgcccggccTTATCCTCAAAAAAGAATTTATCAAAAT s panTro2.chr4_random 3250476 67 + 6711082 aagtgctgggattacaggtgtgagccaccatgcctggccTTATCCTTAAAAAAGAATTTATCAAAAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11816978 67 + 72422247 aagtgctgggattacaggtgtgagccaccatgcccggccTTATCCTCAAAAAAGAATTTATCAAAAT i ponAbe2.chrUn I 7 C 0 s rheMac2.chr15 3776268 67 - 110119387 aagtgctgggattacaggtgtgagccaccatgcctggccTCATCCTCAAAAAAGAATTTATCAAAAT i rheMac2.chr15 I 12 I 32 e tupBel1.scaffold_117845.1-90097 41602 138 - 90097 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=2459.000000 s hg19.chr4_gl000194_random 63475 38 + 191469 tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg s ponAbe2.chrUn 11817045 13 + 72422247 TGTGTGTGTGTGT------------------------- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3250543 31 + 6711082 tgtatgtgtgtgtgtgtgtgtgtgtgtgtgt------- i panTro2.chr4_random C 0 C 0 e tupBel1.scaffold_117845.1-90097 41602 138 - 90097 I e rheMac2.chr15 3776335 32 - 110119387 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=38386.000000 s hg19.chr4_gl000194_random 63513 78 + 191469 tTTTAAGTA-GAGTAACACTATATTAAAATGCCACTATATATGTTCTAACAAAAAATCTCAAT--TTAAC----AAATGTATGTG s panTro2.chr4_random 3250574 77 + 6711082 -TTTAAGTA-GAGTAACACTATATTAAAATGCCACTATATATGTTCTAACAAAAAACCTCAAT--TTAAC----AAATGTATGTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11817058 80 + 72422247 -TTTAAGTA-GAGTAACACTTTATTAAAATGCCACTATATATGTTCTAAC-AAAAATCTCAAT--TTAACAATTAAATGTATGTG i ponAbe2.chrUn C 0 C 0 s tupBel1.scaffold_117845.1-90097 41740 80 - 90097 ttttaaaaatatGTAACACT-TATTAAAATATCACTATGTATATTCTAATGACAAATTTTAACAATTAAT--TAAGATACATG-- i tupBel1.scaffold_117845.1-90097 I 138 N 0 s rheMac2.chr15 3776367 72 - 110119387 ----------GAGTAACACTTTATTAAAATGCCACTATCTATGTTCTAAC-AAATACCTCAAT--TTCACAATTAAATGCATGTG i rheMac2.chr15 I 32 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=63043.000000 s hg19.chr4_gl000194_random 63591 149 + 191469 GGgagagggagagaga----gagggagagagagagaaggagggaggcagagagagagagaagagagagatatgtatctctggtgtctcttcctttttggatgatgaccccagtcctaacagattagggccttacccttttgcccctat-ttaac s rheMac2.chr15 3776439 149 - 110119387 GGgagagagagggagg----gagagagagacagg-acggaggtggggagagagagagagagaagagagaaaggtatctctggcgtctcttccttttcagatgaagaccccagtcctaacagattagggcctcacccttttgcccccatgttaac i rheMac2.chr15 C 0 I 301 s ponAbe2.chrUn 11817138 151 + 72422247 GGgagagggagagagacagggagggagggagagagaaggagggaggcagagagggagagaagagcgagaga--tatctctggtgtctcttcctttttggatgacgaccccagtcctaacagattagggccttacccttttgcccctat-ttaac i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3250651 137 + 6711082 GGgagagggagagaga----gag------------aaggagggaggcagagagagagagaagagagagaTATATATCTCTGGTGtctcttcctttttggatgatgaccccagtcctaacagattagggccttacccttttgcccctat-ttaac i panTro2.chr4_random C 0 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=216175.000000 s hg19.chr4_gl000194_random 63740 433 + 191469 ctttaccttcttaaaagctccttctccaaatacagtcacactgggagatagggctttaggttaggaattctggggggacaaaattctctccagaacaGACACTAATATCATGAGTGCTCAGATTGCTAGTGAATATGTTCTTGTT-ACAATTATTTTCACTTTGCAGTTTTAAATAATGAATACTTGGATAAAAAATACCCACTGTATTCTAA-TTTTTTCAACActtcttacttgcatggattctaaacagaagtccaatgtaattcttatttctgtttctctgtagacaatgtgtttcttcctctgccttattttaatattttatctttgttacaggttttctacggtttgaatatgatattcctaggtatatttttaaaatattcatcctgcttggtgttctctgagctttttggatttgtaatttggtgtc s rheMac2.chr15 3776889 426 - 110119387 ctttaccttcttaaaagctccttctccaaatacagtcacattgggagatagagcttcaggttaggaattctggggggacaaaattGTCTCCAAAAAAGACACTAAT---ATGAGTGCTCAGATTGCTGGTGAATATGTTCATGTT-ACAATTATTTTTGCTTCACAGTTTTAGATAATGAATACTTGGAT----AATATCTGCTGTATTCTAA-TTTTTTCAACActtcttacttgcaaggattgtaaacagaagtctaatgtaattattatgtctgtttctctgtagacaatgtgtttgttcctctgcctttttaaaatattttatctttgttataggttttctacagtttgaatatgatattcctaggtatatttttaaaatattcatcctgcttggtgttccctgagctttttggatatgtaatttggtgtc i rheMac2.chr15 I 301 C 0 s ponAbe2.chrUn 11817289 435 + 72422247 ctttaccttcttaaaagctccttgtccaaatacagtcacactgggagatagggcttcaggttgggaattctggggggacataattctctccagaacaGACACTAATATCATGAGTGCTCAGGTTGCTAGTGAATATGTTCTTGTTAACAATTATTTTTGCTTTGCAGTTTTAGATAATGAATACTTGGATAATAAATACCCACTGTATTCTAATTTTTTTCAACActtcttacttgcatggattctaaacaaaagtccaatgtaattcttatgtctgtttctttgtagacaatgtgtttcttcctctgtcttattttaatattttatctttgttacaagttttctacagtttgaatatgatattcctaggtatatttttaaaatattcatcctgcttggtgttctctgaggtttttggatttgtaatttggtgtc i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3250788 433 + 6711082 ctttaccttcttaaaagctccttctccaaatacagtcacactgggagatagggcttcaggttaggaattctgggaggacataattctctccagaacaGACACTAATATCATGAGTGCTCAGATTGCTAGTGAATATGTTCTTGTT-ACAATTATTTTCACTTTGCAGTTTTAAATAATGAATACTTGGATAATAAATACCCACTGTATTCTAA-TTTTTTCAACActtcttacttgcatggattctaaacagaagtccaatgtaattcttatgtctgtttctctgtagacaatgtgtttcttcctctgccttattttaatattttatctttgttacaggttttctacggtttgaatatgatattcctaggtatatttttaaaatatccatcctgcttggtgttctctgagctttttggatttgtaatttggtgtc i panTro2.chr4_random C 0 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=338338.000000 s hg19.chr4_gl000194_random 64173 541 + 191469 tgtcgctaatttgTGTTTTTTTCCTAGTTAAAAAAATGAACTTTATGGA-----TTTTACATTCTCAA---------CTTTC-ACTTATTTTCAAAATGAGAGACAAGACA-CCTAAACTCCAAGATTTCAGTCCTGAATGCAATAGTACCAGATTTTCAAGTTACATAAGTGAACTGCA---TAAACACCA---------------------------CTAGTTTCAAGTGTACCCTATAAGAAACACATGGACATACTTGCG----TTGTTTAACCACACGGTGTCATATCAATAAACATCAAAGTATCTGACATATATTTGTCCATTAAAAGTAAACACAACTCT--GAGTATCAAATTAAATTAATCATTTGCCTTTTATAATCTAAATCAGAAATTGAAAAACAGGAACATTGTAGAGGTAAGTGGCTGAAAATGCTCTGCTTACTGCACACAAGCACATCATGACAAAGAATGCTAGAAGTAGCTTTCCTCAGAAGTAATAATTGAACATTTAAAATATTATTTTCTCAGAAAAGTTAAAGCTTTTAGTGTAAAAAGCATGG--------------------------TAAATGACATTTTAACT------TAATAGTT s rheMac2.chr15 3777315 567 - 110119387 tgtcattaatttgTGTTTTTTTCCTAGTT-AAAAAATGAACTTTATAGA-----TTTTACATTCTCAA---------CTTTC-ACTTATTTTCAAAATGAGAGACAAGACA-CCTAAACTCCAAGATTTCAGTCCTGAATGCAATAGTACCAGATTTCCAAGTTACATAAGTGAGTTGCA---TAAACACTA---------------------------CTA-TTTCAAATGTACCCTATAAGAAACACATGGACATATTTGAG----TGGTTTAACCACACAGTGTCATATCAATAAACATCAAAGTATCTGACATGTATTTGTCCATTGAAGGTAAACACAACTCT--GAGTATCAAATTAAATTAATCATTTGCCTTTTATAATCTAAATTGGAAACTGAAAAACCGGAAGAATGTAGAGGTAAGTAACTGAAAACGCTCCACTTACTGCACACAAGCCCATCATGACAAAGAATGCTAGAAGTAGCTTTCCTCAG----AATAATTGAACACTTGAAATATTATTTTACCAGAAAAGTTAAAGCTTTTAATGTGAAAATCATGGTAAATGACATTTACCATGACATAAGTTAAATGACATTTTAACTTAATAGTAATAGTT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11817724 537 + 72422247 tgtcattaatttgT-TTTTTTTCCTAGTTAAAAAAATTAACTTTATAGA-----TTTTACATTCTCAA---------CTTTCAACTTACTTTCAAAATGAGAGACAAGACA-CCTAAACTCCAAGATTTCAGTCCTGAATGCAATAGTACCAGATTTTCAAGTTACATAAGTGAGCTGCA---TAAACACTA---------------------------CTAGTTTCAAGTGTACCCTCTAAGAAACACATGGACATACTTGCG----CTGTTTAACCACACAGTGTCATATCAATAAACATC-AAGTATCTGACATATATTTGTACATTAAAGGTAAACACAACTCT--GAGTATCAAATTAAATTAGTCATTTGCCTTTTATAATCTAAATCGGAAACTGAAAAACTGGAAGAATGTAGTGGTAAGTAGCTGAAAATGCTCCACTTACTGCACACAAGCACATCACGACAAAGAACGCTAGAAGTAGCTTTCCTCAGAAGTAATAATTGAACATTTAAAA---TATTTTATCAGAAAAGTTAAAGCTTTTAGTGTAAAAAGCATGG--------------------------TAAATGACATTTTAACT------TAATAGTT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3251221 541 + 6711082 tgtcattaatttgTGTTTTTTTCCTAGTTAAAAAAATGAACTTTATAGA-----TTTTACATTCTCAA---------CTTTC-ACTTATTTTCAAAATGAGAGACAAGACA-CCTAAACTCCAAGATTTCAGTCCTGAATGCAGTAGTACCAGATTTTCAAGTTACATAAGTGAACTGCA---TAAACACCA---------------------------CTAGTTTCAAGTGTACCCTATAAGAAACACATGGACATACTTGCG----TTGTTTAACCACACGGTGTCATATCAATAAACATCAAAGTATCTGACATATATTTGTCCATTAAAAGTAAACACAACTCT--GAGTATCAAATTAAATTAATCATTTGCCTTTTATAATCTAAATCAGAAATTGAAAAACGGGAACATTGTAGAGGTAAGTGGCTGAAAATGCTCTGCTTACTGCACACAAGCACATCATGACAAAGAATGCTAGAAGTAGCTTTCCTCAGAAGTAATAATTGAACATTTAAAATATTATTTTCTCAGAAAAGTTAAAGCTTTTAGTGTAAAAAGCATGG--------------------------TAAATGACATTTTAACT------TAATAGTT i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_102407 3815 532 - 7257 TGTTTCTAGTGTGAACTTTTTATCTTG---ACAAAATGAATTTTATAAACAGATTTTTCCATTCTCAAGCTCCCAAGATTTC-ACTTTTTTAAAAAGTGAGAGACAAGGCAGCCTAGACTCCAAGATTTAAGTAATGAATAAAACAGTACCAGATTTTCAAGTTATATTAGT----TGCATTTTACATACCATGAAAGTGAAGAGAATTGTGATGCTTGCTAGTTTCAAGTGTATCTTTTAAGAAACACATGGACAAACTTGAGGGTTTTTTTTAACCACAGAGTCTCATATCAATAATTATCTAAGTATCTGAATCATATTT-TCCATTAATGGTAGGCACAACTCTACAAATATCAAATTATGTCAACCATCTACTTTTTATAATCTTGATTTGGGA------------------------------AGCTGAAATTGCTACACTTACTGCACACAAGCACATCATGACAAGGAATGCTACATGTAGTTCACCACAGGAATGATTTTTGAAAATTTAAAATATTATCTTCTTGGAAAAG----------------------CAAAG--------------------------TAAAGGCTGCATTGACT------CATTCTCT i tarSyr1.scaffold_102407 N 0 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=41598.000000 s hg19.chr4_gl000194_random 64714 62 + 191469 AAGTATACAGCAAATTATAGATTACAAGCAATTAGTTACCCACATTTCACCAGAACCTTCAG s tupBel1.scaffold_1182.1-172424 81318 54 + 172424 AAGAATCTAGCAAATTATAGATTTTGTGCCAATAGTTACTAACA-CACAC-------ATTTG i tupBel1.scaffold_1182.1-172424 N 0 C 0 s rheMac2.chr15 3777882 62 - 110119387 AAGTATCTAGCAAATTACAGATTTTGAGCAATTAGTTACCCACATTTCACCAGGACCTTCAG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11818261 62 + 72422247 AACTATATAGCAAATTACAGATTTTGAGCAATTAGTTGCCCACATTTCACCAGAACCTTCAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3251762 62 + 6711082 AACTATATAGCAAATTATAGATTTCAAGCAATTAGTTACCCACATTTCACCAGAACCTTCAG i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_102407 4347 56 - 7257 AAAGATTTAGCAAATTATAGATTTTGTGAAATTAGATACCAACA-TACACAA-----TTAAG i tarSyr1.scaffold_102407 C 0 C 0 s dipOrd1.scaffold_23999 193 36 + 22470 -------------------------AAAGGATTAG-TATTCATTGTTTAGCAGAATTTTTAG i dipOrd1.scaffold_23999 N 0 N 0 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=110313.000000 s hg19.chr4_gl000194_random 64776 136 + 191469 TGAAAGTGTCTACTCTCAACA-TTGAC-------CAGAACCTTCCTGT---TCTGAAGTGTCTACTCT------------TTAGAGTTGCTTCAGCTTTACATATCTGTAAAACCTAAGATTACTCAATGAGAAGTTACACCTTATTCTGTACTAGATA s tarSyr1.scaffold_102407 4403 133 - 7257 AGA------------TTAATA-TTGACTGTTCAACAGAACCTTTCTATTACTTTTAAGCATCTATTTT------------TTAGAGTTG-TTTAGCTTTACATGTCTATGAAATTTAACATTCTTCAATGTGGAGTTATAGCTTATTCTGCACTAGATA i tarSyr1.scaffold_102407 C 0 C 0 s panTro2.chr4_random 3251824 136 + 6711082 TGAAAGTGTCTACTCTCAACA-TTGAC-------CAGAACCTTCCTGT---TCTGAAGTGTCTACTCT------------TTAGAGTTGCTTCAGCTTTACATATCTGTAAAACCTAAGATTACTCAATGAGAAGTTACACTTTATTCTGTACTAGATA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11818323 136 + 72422247 TGAAAGTGTCTACTCTCAACA-TTGAC-------CAGAACCTTCCTGT---TCTGAAGTGTTTACTCT------------TTAGAGTTGCTTTAGCTTTACGTATCTGTAAAACCTAAGATTCCTCAATGGGAAGTTACAGCTTATTCTGTACTAGATA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3777944 137 - 110119387 TGAAAGTGTCTGCTCTCAACATTTGAC-------CAGAACCTTCCAGT---TCTGAAGTGTCTACTCT------------TTAGAGTTGCTTTAGCTTTACATATCTGTAAAACCTAAGATTCCTCAATGAGAAGTTATAGTTTATTCTGTACTAGATA i rheMac2.chr15 C 0 C 0 s tupBel1.scaffold_1182.1-172424 81372 145 + 172424 TGAG-----------CTAATG-CTGACTATTAA-CAGAACCTTTAGGTAATTCTGAAGCATCTTCTATTACAGTCTCCTATTAAAGTTATTTTAGCTTTCCAAGTTTATGAAATTTACAATTCTTCAACAGGAAGTTAGAGCTTACTCTGCACTAAAT- i tupBel1.scaffold_1182.1-172424 C 0 T 30517 e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=44286.000000 s hg19.chr4_gl000194_random 64912 71 + 191469 CACATA--ATATATATAGATTTAGAACAAATGGATGTTTTTCAACTTCAAAAAAAGTATTTTAATTTACACAA s tarSyr1.scaffold_102407 4536 73 - 7257 CAGGTGACATGTGTACAGATTCAGAATTAATGGCTGCTTTTTCCCTTCAAGGAACCAATTTTAATTTATACAA i tarSyr1.scaffold_102407 C 0 M 137 s panTro2.chr4_random 3251960 71 + 6711082 CACATA--ATATATATAGATTTAGAACAAATGGATGTTTTTCAACTTCAAAAAAAGTATTTTAATTTACACAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11818459 68 + 72422247 CACATA--ATATATATAGATTTAGAACAAATGGATGCTTTTCAACTTC---AAAAGTATTTTAATTTACACAA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3778081 73 - 110119387 CATGTAATATATATATAGATTTAGAACAAATGGATGCTTTTTACCTTCAGAGAAAGTATTTTCATTTATACAA i rheMac2.chr15 C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=52484.000000 s hg19.chr4_gl000194_random 64983 96 + 191469 TGTTAGATTGTTTTTCACCCATGTGTATACATAACAGTGTTTCCCAAATTCACAGGGTCCATTTCCATGATTCTAAAGCAAAAATAGAGGCACACA s panTro2.chr4_random 3252031 96 + 6711082 TGTTAGATTGTTTTTCACCCATGTGTATACATAACAGTGTTTCCCAAATTCACAGGGTCCATTTCCATAATTCTAAAGCAAAAATAGAGGCACACA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11818527 95 + 72422247 TATTAGATT-TTTTTCACCCATGTGTATGCCTAACAGTGTTTCCCAAATGCACAGGGTCCACTTCCATAATTCCAAAGCAAAAGTAGAGGCATACA i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3778154 95 - 110119387 CATTAGATT-TTTTTCACCCATGTGTAGGCATGAAAGTGTTTTCCAAATGCACAGGGTCCACTTCCACAATTCTAAAGCAAAAATAGAGGCATACT i rheMac2.chr15 C 0 C 0 s eriEur1.scaffold_328702 3452 84 + 4646 AATTAGTCTGTTTTTCACCCTTCTGTTAGGGTAAAAGTGCCTCTCGAGTGCATAGGGTCCATTTCCAACGACCTA----AAAACTACA-------- i eriEur1.scaffold_328702 N 0 C 0 e tarSyr1.scaffold_102407 4609 137 - 7257 M e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=547838.000000 s hg19.chr4_gl000194_random 65079 742 + 191469 AATGGATAATAATTCATAGTTTTATGCCTTTTTTTAACCTATCTTTAAAGAAATTCAGTTGCCATTTAGACAAAGATGTGATGAACCTGTAACAAATTTCTAT-----GACATGGAAAATTAAAGGTCTAAAAATCC-----------TAAATGTAGT----------AGCTCTGGGCA------GTTTGCAATTTGTGCATGGGTTCACTCACCCTAT----GGTCCGTGA----ACTCCCTTATCCT--GCAAGCTGTAGGTACT-----TTC-AGCAAATATGAGACTCAATAAGACTAAG---GAAGGGCTTGTTTAAATTAGTTCCCCTCACA-GTTGATTCTAATCTTGCAATGAACAGATTTAATGTACTAGTGAGTTAAATTTT--AAAGTAATTATA----AAGCCATTTACTCTATCATAAATGAATGAAATGTA----AGAATCACACTTAAAACAAGTCTTTCATTTTAATGAATGGTA-TCTTTCATTTATATACAAAGGAATTCACTTGCCAGCAGCATTTAAATATAGGAATAGTCTCGTCTTTTCTCTAGTGCCTTTTATAAAGCAGTGCCATTTCTAACTAGGTGTATTTGTTTCCCAGCTATTCAGTAACTACACTATAGGTATCTAATAGATTCAAGAAAAGATTGGAAAATTGAGAAGATTTAGCATTTTAAACATTT--GAAAAATGTTGCTACAAAGCATAG--ATTATGAA-----TGCATTAGTAAAAT-AAATTGACACCTTATGTGAGAATCATTAAGTTGGTT---TAATTATATCACAGAAGTATGGGCT s eriEur1.scaffold_328702 3536 763 + 4646 -------AATGAGCGATATTTATGAGAATATTCTTCATTAAACTTTCACAAAATGCGAGCTGTATGT--------GTGAGACAGGCCTGTTGCATTTCTCTActtgtgaactaaaaatattaaaacccTCACCATACTCCGGTGCAATTAAAAGGCGCCTGTAATTTAAACTCTACACACTACTTCTGTGCAATT--TACACTGGTTCCTTTACTTCAC----AAGCTGTTAACTCACTCCCTTAATCTTGACAAGACACTGGAACT-----TTTGAGCAATTTTGAGATTAAG-AAGACTAAGAGAGAATAACTCAGTGGAGTCAATCTCCTAAAAAAGTTGTTTTGAATCTTGTTACAAGCAGATTTAATATGCTTGGATGTtaacttcttaaaaataaatatactggaAGGCATTTATCCAGGCATATATGAGTTGCATATAATTAAGAATCACA-TTAAAATAAGCCTTTAATTT--ATGAGTGACA-TTTTCCATTTATATAGAAAAGGATTTAA----TAGCAGCATTCAAAAATAGAAATAGTCCTATATCTTCTCTTTTCACTTTCATAA---AGTGCTATTTTTAACCAAGAAGATTTACTACTGACTTCTCCAGT------ACTGCATGTTTCTAGCAGGCTCTAGGGAAGATTGGAAgggtataa---------tttttaaatattttctaaagggGCTACAGTAAATCAGAG--ACtaggaatttattttattagtaaaataaaaattgaatctTATGTGGAAATTACTCAGTGGATTTAAAAACGACTTCACAGAAGCACTGGTT i eriEur1.scaffold_328702 C 0 C 0 s tarSyr1.scaffold_102407 4750 696 - 7257 AATATATCTTAATTCAT------------------------CTTGGAAACAAATTGAATTGCCATCTAGAAAGAGATGTGACAAACTTGCAAAAAACTTCTGT-----GACTTGAAAAATTAAAAGTCTAGGTGCTC-----------TAAATCCTGC----------AGCTCCA-------------TGCAGTCCCTGCACAAGGTCACTCAACCTGTGTGAGGTGCCCCA----ATAACTTTCTCCT--GGAGACTGTAGGTGCTCAAGGTTC-GGCAATTAACAGACCCCA-AAAACT---------------GTTCCAATTAGCCATCTACAAATGTTGTTCCAAATCTTGTAACAAACAGATTAAATATGCTTGTGAATTGCATTCT--AAAGAAATTATC----AAACCACTTACTCTAACAGAAATGAATGAAATGTA-----------CATTT-AAACAAGTATTTGATTTTAATGAATGGCATTTTTTCATTTATATACAAAGGAATT-------TAGCAGCACTTAAATGTAGAAAGAGTCGCATCTCTTAATTTTTCCCTTTAATAA---ATTGCCATTTATAACTGAATAGATTTACTACCCAGATTTTCAGTAACTACACCATATGTATCTAATGGCATCAAGAAAATGCTGGAAAATTTAAAAGTTTTAGCATTTTAAACATTT--GCAAAACGTTGCTACAAAGCATAGAAACTATGAA-----TGTGTTAGTAAAAT-AAAAGTGCATCTTAGGTGAGAATCATTAAGTTGGTTTACTAATTACTTCACAGAAGCATGGGCT i tarSyr1.scaffold_102407 M 137 C 0 s panTro2.chr4_random 3252127 742 + 6711082 AATGGATAATAATTCATAGTTTTATGCCTTTTTTAAACCTATCTTTAAAGAAATTCAGTTGCCATTTAGACAAAGATGTGATGAACCTGTAACAAATTTCTAT-----GACTTGGAAAATTAAAGGTCTAAAAATCC-----------TAAATGTAGT----------AGCTCTGGGCA------GTTTGCAATTTGTGCATGGGTTCACTCACCCTAT----GGTCCGTGA----ACTCCCTTATCCT--GCAAGCTGTAGGTACC-----TTC-AGCAAATATGAGACTCAATAAGACTAAG---GAAGGGCTTGTTTAAATTAGTTCCCCTCACA-GTTGATTCTAATCTTGCAATGAACAGATTTAATGTACTAGTGAGTTAAATTTT--AAAGTAATCATA----AAGCCATTTACTCTATCATAAATGAATGAAATGTA----AGAATCACACTTAAAACAAGTCTTTCATTTTAATGAACAGTA-TCTTTCATTTATATACAAAGGAATTCACTTGCCAGCAGCATTTAAATATAGGAATAGTCTCGTCTTTTCTCTAGTGCCTTTTATAAAGCAGTGCCATTTCTAACTAGGTGTATTTGTTTCCCAGCTATTCAGTAACTACACTATAGGTATCTAATAGATTCAAGAAAAGATTGGAAAATTGAGAAGATTTAGCATTTTAAACATTT--GAAAAATGTTGCTACAAAGCATCG--ATTATGAA-----TGCATTAGTAAAAT-AAATTGACACCTTATGTGAGAATCATTAAGTTGGTT---TAATTATATCACAGAAGTATGGGCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11818622 735 + 72422247 AATGGATAATAGTTCATAGTTTTATGCCTTTTTTTAACCTATCTTTAAAGAAATTCAGTTGCCATTTAGACAAAGATGTGATGAACTTGTAACAAATTTCTAT-----GACTTGGAAAATTAAAGGTCTAAAAATCC-----------TAAATGTTGT----------AGCTCTGGGCA------GTTTGCAATTTGTGCTTGGGTTCACTCACCCTGT----GGTCCGTGA----ACTCCCTTATTCT--GCAAGCTGTAGGTACT-----TTC-AGCAAATACGAGACTCAA-AAGACTAAG---GAAGGGCTTGTTTAAATTAGTTCCCCTAACA-GTTGATTCTAACCTTGCAATGAACAGATTTAATATACTAGTGAGTTAAATTTT--AAAGTAATTATA----AAGCCATTTACTCTATCATAAATGAATGAAATGTA----AGAACCACACTTAAAACAAGTCTTTCATTTTAATG----GTA-TCTTTCATTTATATACAAAGGAATTCACTTGCCAGCAGTATTTAAATATAGAAATAGTCTCGTCTTTTCTCTAGTTCCTTTTATAAAGCAGTGCCATTTCTAACTGGGTGTATTTGTTACCCAGCTTTTCAGCAACTACACTATAGGTATCTAATAGATTCAAGAAAAGATTGGAAAATTGAGAAGATTTAGCGTTTTAAACATTT--GAAAAATGTTGCTACAAAGCATAG--ATTATGAA-----TGCGTTAG-----T-AAATTCACACCTTACGTGAGAATCATTAAGTTGGTTCAATAATTATATCACAGAAGTATGGGCT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3778249 742 - 110119387 AATGGATAATAATTTATAGTTGTATGCATTTTTT--ACCTATGTTTAAAGAAATTCAATTGCCATTTAGACAGAGATGTGATGAACTTGTAACACATTTCTAT-----GACTTGGAAAATTAAAGGTCTAA------------------AAATGTCAT----------AGCTCTGGGCA------ATTTGCAATTTGTGCATGGGTTCACTCACCCTAT----GGTCCGTGA----ACTCCCTTATCCT--GCCAACTGGGGGTACT-----TTC-AGCAAATATGAGACTCAA-AAGACTAAGGAAGAAGGGCTCATTTAAATTAGTTCCCCTAAAA-GTTGATTCTAATCTTGCAATGAACAGTTTTAATATACTTGTGAGTTAAATTTT--AAAGTAATTATA----AAGCCATTTACTCTATCATAAATGAATGAAATGTAATTCAGAACCACACTTGAAACAAGTCTTTCATTTTAATGAATGGTA-TCTTTCATTTATATACAAAGGAATTCAATTGCCAGCAGCATTTAAATATAGAAATAGTCCCATCTTTTCTCTAGTCTCTTTTATAAAGTAGTGCCATTTTTAAATAGGTGTATTTGTTACCCAGCTTTTCAGTAACTACACTATGGGTATCTAATAGATTCAAGAAAAGATTGGAAAATTGAAAAGATTTAGCATTTTAAACATTT--GAAAAATGTTGCTACAAAGCATAG--ATTATGAA-----TGCATTAGTAAAAT-AAATTCACACCTTATGTGAGAATCATTAAGTTGGTTTAATAATTATATCACAGAAGTATGGGCT i rheMac2.chr15 C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=15153.000000 s hg19.chr4_gl000194_random 65821 26 + 191469 CACTAAT--ATTTATACCA-ATTTATGCT s tarSyr1.scaffold_102407 5446 23 - 7257 CAC------GTTTATGCAATTTTTTTGCT i tarSyr1.scaffold_102407 C 0 C 0 s panTro2.chr4_random 3252869 26 + 6711082 CACTAAT--ATTTATACCA-ATTTATGCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11819357 26 + 72422247 CACTAAT--ATTTAAGCCA-ATTTATGCT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3778991 26 - 110119387 CATTAAT--ATCTATGCCA-ATTTATGCT i rheMac2.chr15 C 0 C 0 s ochPri2.scaffold_164948 3 26 - 977 CACTGCT--ATTTGTCCCA-CTCCTCACT i ochPri2.scaffold_164948 N 0 N 0 s eriEur1.scaffold_328702 4299 27 + 4646 CACTAACAAAGTTATGCCA-ATTTCATT- i eriEur1.scaffold_328702 C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=13189.000000 s hg19.chr4_gl000194_random 65847 22 + 191469 AAT----TAAACCAGAAA--G----TTTCTGT s rheMac2.chr15 3779017 22 - 110119387 AAA----TAAATGAGAAA--G----TTTCTGT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11819383 22 + 72422247 AAT----TAAACCAGAAA--G----TTTCTGT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3252895 22 + 6711082 AAT----TAAACCAGAAA--G----TTTCTGT i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_102407 5469 26 - 7257 AATTATCTATGCCAGAAATGA----TTTCT-- i tarSyr1.scaffold_102407 C 0 C 0 s eriEur1.scaffold_328702 4326 30 + 4646 AATTATCTAAACCAGAAA--gcatatttctat i eriEur1.scaffold_328702 C 0 N 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=128185.000000 s hg19.chr4_gl000194_random 65869 178 + 191469 AGGTAATTCAGCTCTGAGCACCATTTAATAGGGTTATGCCAAATAGAACCAATGGTTATATAATACCCAGAATATAAACCTCAGCAAATTCAAACTTTTGGAATGGCAACACAAG----TG------AGAATGAGAGGCAATATTTCATTTCAAAGTACCGTAGGCTGCTAAGAGTGTTCTTTTCTTT s rheMac2.chr15 3779039 182 - 110119387 AGCTAATTCAGCTCTAAGCACCATTAAATACGGTTATGCCAAACAGAACC--TGGTTATGTAATACCCAGAATATAAACCTCAGCAAATTCACACTTTTAGAATGACAACACAAG----TGAGAGTTAGAATGAGAGGCAATATTTTATTTAAAAGTACCATAGGCTGCTAAGAGTATTCTTTTCTTT i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11819405 184 + 72422247 AGGTAATTCAGCTGTAAGCAGCATTTAATAGGGTTATGCCAAATAGAACCAATGGTTATATAATACCCAGAATATAAACCTCAGCAAATTCAAACTTTTAGAATGGCAACACAAG----TGAGAATTAGAATGAGAGGCAATATTTCATTTAAAAGTACCATAGGCTGCTAAGAGTGTTCTTTTCTTT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3252917 178 + 6711082 AGGTAATTCAGCTCTGAGCACCATTTAATAGGGTTATGCCAAATAGAACCAATGGTTATATAATACCCAGAATATAAACCTCAGCAAATTCAAACTTTTGGAATGGCAACACAAG----TG------AGAATGAGAGGCAATATTTCATTTCGAAGTACCATAGGCTGCTAAGAGTGTTCTTTTCTTT i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_102407 5495 175 - 7257 -GGTAATTCAGCTCTAAGCCTTATTAAATAGTGTTATGCCAAATAGAATCAATGACCACATAA------------AAAACCCACCAAATTCAAGCTTTTAGAATAGCAACACAAGTTAATGAGAACCAGAACAAAAGGCAATATTTTATTTAAAAGTAGCACAGACTGCTAAGAGTGTTCTTTTCTTT i tarSyr1.scaffold_102407 C 0 N 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=72777.000000 s hg19.chr4_gl000194_random 66047 139 + 191469 ---TAAAAATTTGTGTGGTTGTTAGTAATGTACCTTAACACTGGTCCTCCTTGACAGCAGTGTTAGAGATGGTTAGGTAGAACCTATATTACGGAAGTCAGCGTTGCCCATTTCTTTAGTTCAGTGATTAAAATTGAAATTA s rheMac2.chr15 3779221 142 - 110119387 AAATAAAAATTTGTGTGGTTGTTAATAATGTACCTTAACACTGGTCCTCCTTGACAGCGGTGTTAGAGATGGTTAGGTGGAACCTATATTACGGAAGTCAGAGTTGCCCATTTCTTTAGTTCAGTGATTAAAATTGAAATTG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11819589 136 + 72422247 ---TAAAAATTTGTGTGGTTGT---TAATGTACCTTAACACCGGTCCTCCTTGACAGTGGTGTTAGAGATGGTTAGGTGGAACCTATATTACGGAAGTCAGTGTTGCCCATTTCTTTAGTTCAGTGATTAAAATTGAAATTG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3253095 139 + 6711082 ---TAAAAATTTGTGTGGTTGTTAGTAATGTACCTTAACACTGGTCCTCCTTGACAGCGGTGTTAGAGATGGTTAGGTAGAACCTATATTACGGAAGTCAGCGTTGCCCATTTCTTTAGTTCAGTGATTAAAATTGAAATTA i panTro2.chr4_random C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=11127.000000 s hg19.chr4_gl000194_random 66186 21 + 191469 CTTTTACAAAACAATTGAACT s panTro2.chr4_random 3253234 21 + 6711082 CTTTTACAAAACAATTGAACT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11819725 21 + 72422247 CTTTGACAAAACAATTGAACT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3779363 21 - 110119387 CTTTTACAGAACAATTGAACT i rheMac2.chr15 C 0 C 0 s choHof1.scaffold_119684 4397 21 + 5710 GAATTCCACCACATTGGAGCT i choHof1.scaffold_119684 N 0 I 1250 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=567244.000000 s hg19.chr4_gl000194_random 66207 1149 + 191469 GCTGCTTACAATATAAATAGAATACCAACAGGATTCCTGTTGTATTCACATTATTCTCTAATTAGTATTTTTACATTTCCACTCTGACCTGACCTTCAGTAGTTCCTTTATTTTTATTTTCAAACa-tttttgtgagtatataataagcatatatatttacggggtgcatgagatgttttgatacaggcatgcagcatgaactaatcacatcatggagagt-gggtatccatccctttaagcatgtttcctttgtgttacaatccaattagattcttttagttatttttaaatgtacaattattgactagagtccccctgttgtgctatcaaatagtatgtcttattcattccttctgcctatttttgtacccattacccgtgccctgtctcccccca-tcagccccctagtacttactatgtccttgagttcaattgttttga-tttttagatcccacaaataagtgagaacatgcaatgtctgcctttccgtgcttggcttatttcccttaacataatgatatccagttccttccatgttgttgcaaatgactgaatctcattattttttagggctgaataatactccactgtgtgtatctaccacattttctttaatacattaatctgttgatggacacttaggttgcttccaaatcttagctattgtcaacagtggtgcaaccaacatgggagtgcagataatttcttcgatatactcatttcttatttctggggtatatatccaacagtgggattgctggatcatgtggcacctctattttcagtgtttagaggaacctccaaactgttctccaccatggctgtaccagtAGTACCTTAAAATGCAAATGCAATTGGTAAAAGAA--CAAGGCAGCATGTAGTGCTTGCACTTACAAATACTACCAGTTTTGTAACAATTTGCA------------TTTTTTTTTGTCCTTGAAAGAGTAACCACTTACTTAATAAAACTAATATTTAAAAGCGCAATATTCCTTCCTTTGCATGGCATGCAGGAATGGTGAAAACAAAGAAACAGTCATCCCTTCTCTTCCCCCCACTTCTGGTCTCCCGAAATAGGAATGCCAGGTCAGACAGGTGGAGGAGGGAAATGGGGCACAGGTCAAGGTATGATGAATCTCTTAAAAAGAAATC s rheMac2.chr15 3779384 1159 - 110119387 GCTGCTTACAATGTAAATAGAATACCAACAAGATTCCTGTTGTATTCCCATTATTCTCTAATTAGTATTTTTGCATTTCAACTCTGACCTGACCTTGAGTAGTTCCTTTATTTTTATTTTCAAACa-tttttgtgagtatataataggcatatatatttaccaggtgcgtgagacgttttgatgcaggcacgcaatgtgaactcatcatatcatggagagcagggtatgcatcccttcaagcacgtatcctttgtgttataatccaattactttcttttagttgtttttaaatgtacaattattgactagagtccccctgttgtgctatcaaatagtatgtcttattcattccttccgactatttttgtacccattacccatcccctgccttccccc--gcaaccccctattacctattatgtccatgagttcaattgttttgattttttagatcccacaagcaagtgagaacatgcaatgtcagcctttctgtgcctggcttatttcccttaacagaatgatctccagttccttccatgttgctgcaaatgactgaatctcattcttttttatggctgaataatactccactgtatatatctaccgcattttctttaatacattaatttgttgatggacacttaggttgcttccaaatcttagctattgttaacagtggtacaaccaacatggaagtgcagat-atttcttagatatagtcatttcctattttgggggtatatacccagcagtgggattgctggatcatgtggtacctctattttcagtgtttagaggaacctccaaactgctctcccccatggctgtaccagtAGTACCTTAAAATGCAAATGCAACTGGTAAAAAAAAGCAGGACAGCATGTAGTATTTGCACTTACAAATCCTACCAGTTTCATAACAATCTGCAttttttttttttttttttttGGTCCTTGGAAGAGTAACC----ACTTAATAAAACAGATACATAAAAGCGCAATATTCCTTCCTTTGCATGGCATCCAGGAATGGTGAATGCAAAGAAACAGTCATCCCTTCTCTTCCCCCCACTTCTAGTCTCCCGAAATAGGGACGCCAGGTCAGACAGGTAGAGGAGAGAAATGGGGCACAGGGTAAGATATGATGAATCTCTTAAAAAGAAATC i rheMac2.chr15 C 0 I 2 s ponAbe2.chrUn 11819746 1142 + 72422247 GCTGCTTACAATACAAATAGAATACCAACAGGATTCCTATTGTATTCACATTATTCTCTAATTAGTATTTTTGCATTTCGACTCTGACCTGACCTTCAGTAGTTCCTTTATTTTTATTTTCAAACa-tttttgtgagcatataatagacatatatatttatggggtgcatgagatgttctgatacaggcatgcagtgtgaactaatcacatcatggagagtggggtatccatcccttcaagcacgtatccttcgtgttacaatccaattacatttttttagttatttttaaatgtacaattactaactagagtccccctgttgtgctatcaaatagtatgtcttattcattccttttgcctatttttgtacccattacccatcccctgccttcctcc--ccagccccctagtacttactatgtccatgagttcaattgttttga-tttttagatcccgcaaataagtgagaacatgcaatgtctgcctttccgtgcttggcttatttcccttaacataatgatctccagttccttccctgttgttgcaaatgactgaatctcattcttttttagggctgaataatactccactgtgtgtatctaccagattttctttaatacattaagctgttgatggacacttaggttgcttccaaatcttagctattgtcaacagtggtgcaaccaacatgggagtgcagataatttcttcgatacactcatttcctatttttggggtatatacccaacagtgggattgctggatcatgtggtacctctattttcagtgtttagaggaacctccaaactgttctccaccgtggctgtaccagtAGTACCTTAAAATGGAAATGCAATTGGTAAAAGAA--CAAGGCAGCATGTAGTACTTGCACTTACAAATACTACCAGTTTCGTAACAATTTGCA---------TTTTTTTTTTTTGTTCTTGGAAGAGTAACC----ACTTAATAAAACAGATACATAAAAGCACAATATTCCTTCCTTTGCAGGGCATCCAGGAATGGTGAAAGCAAAG-AACAGCCATCCCTTCTCTTTCCCCCACTTCTAGTCTCCCGAAATAGGGACGCCAGGTCAGACAGGTGGAGGAGGGAAATGGGGCACAGGTCAAGGTATGATGAATCTCTT-----GAAATC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3253255 1149 + 6711082 GCTGCTTACAATATAAATAGAATACCAACAGGATTCCTGTTGTATTCACATTATTCTCTAATTAGTATTTTTACATTTCCACTCTGACTTGACCTTCAGTAGTTCCTTTATTTTTATTTTCAAGCATtttttgtgagtatataataagcatatatatttatggggtgcatgagatgttttgatacaggcatgcagcatgaactaatcacatcatggagagt-gggtatccatccctttaagcatgtttcctttgtgttacaatccaattagattcttttagttatttttaaatgtacaattattgactagagtccccctgttgtgctatcaaatagtatgtcttattcattccttctgcctgtttttgtacccattacccgtgccctgtctccccccgcccagccccctagtacttactatatccatgagttcaattgtttcga-tttttagatcccacaaataagtgagaacatgcaatgtctgcctttccgtgcttggcttatttcccttaacataatgacatccagttccttccatgttgttgcaaatgactgaatctcattcttttttagggctgaataatactccactgtgtgtatctaccacattttctttaatacattaatctgttgatggacacttaggttgcttccaaatcttagctattgtcaacagtggtgcaaccaacatgggagtgcagataatttcttcgatatactcatttcttatttctggggtatatatccaacagtgggattgctggatcatgtggcacctctattttcagtgtttagaggaacctccaaactgttctccaccatggctgtaccagtAGTACCTTAAAATGCAAATGCAATTGGTAAAAGAA--CAAGGCAGCATGTAGTGCTTGCACTTACAAATACTACCAGTTTTGTAACAATTTGCA--------------TTTTTTTGTCCTTGAAAGAGTAACCACTTACTTAATAAAACAGATATTTAAAAGCGCAATATTCCTTCCTTTGCATGGCATGCAGGAATGGTGAAAGCAAAGAAACAGTCATCCCTTCTCTTCCCCCAACTTCTGGTCTCCCGAAATAGGAATGCCAGGTCAGACAGGTGGAGGAGGGAAATGGGGCACAGGTCAAGGTATGATGAATCTCTTAAAAAGAAATC i panTro2.chr4_random C 0 C 0 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=43551.000000 s hg19.chr4_gl000194_random 67356 168 + 191469 Tggccaggcacagtggctcacgcctgtaatcccagcactttgggaggcagaggcgggcggatcacgaggtcaggaatcgagaccatcctggagaacacggtgaaaccccgtctctattaaaaatacaaaaaaattagccgtgtgtggtggcggacgcctgtagtccca s panTro2.chr4_random 3254404 168 + 6711082 Cggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggcagcggtgggaggatcacgaggtcaggaatcgagaccatcctggagaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgtgtgtgttggcggacgcctgtagtccca i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11820888 168 + 72422247 Tggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggaatcgagaccatcctggagaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctatagtccta i ponAbe2.chrUn C 0 C 0 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e rheMac2.chr15 3780543 2 - 110119387 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=6421.000000 s hg19.chr4_gl000194_random 67524 24 + 191469 ---gctactgggaggctggggctggag s ponAbe2.chrUn 11821056 24 + 72422247 ---gctactgggaggctggggcaggag i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3254572 24 + 6711082 ---gctactgggaggctggggctggag i panTro2.chr4_random C 0 C 0 s dasNov2.scaffold_262032 508 20 + 1067 ACTGCTAC-AGAACGCTGGAG------ i dasNov2.scaffold_262032 N 0 N 0 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e rheMac2.chr15 3780543 2 - 110119387 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=22169.000000 s hg19.chr4_gl000194_random 67548 117 + 191469 aatggcgtaaacccgaggggcggagcttgtagtgagcggagatggcgccactgcattccagcctgggcgacagagcgagactcc-ttcccccgaccgcc-----------aaaaaaaaaaaaaaTACCG s ponAbe2.chrUn 11821080 118 + 72422247 aatggcgtgaacccgagagggggagcttgcagtgaggcaagatcgcaccactgcattccagcctgggcaaca-agcgagactccgtTCCCCCCACCCCC------CCCCCAAAAAAAGAAAAA----CA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3254596 128 + 6711082 aatggcataaacccgaggggcggagcttgcagtgagcggagatggcgccactgcattccagcctgggcgacagagcgagactcc-ttgcccccaccgccaaaaaaaaaaaaaaaaaaaaaaaaaTACCG i panTro2.chr4_random C 0 C 0 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e rheMac2.chr15 3780543 2 - 110119387 I e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=79069.000000 s hg19.chr4_gl000194_random 67665 171 + 191469 CTTTCCCCAGAATGCTAGCCTGATAGGAACTCCACCCCATCCATTCCAACCTAGTAAGGATAGTTTAGTTTGTGTTTTCTGGTCTCACTTCCTT----ACTTCTAGTGTTCTTTTTTTGTTTCTGTTATTAAATTTCAGAAGACAAACCTTAGCATTTTCTAAAAGAAATTATTT s panTro2.chr4_random 3254724 171 + 6711082 CTTTCCCCAGAATGCTAGCCTGATAGGAACTCCACCCCATCCATTCCAACCTAGTAAGAATAGTTTAGTTTGTCTTTTCTGGTCTCACTTCCTG----ACGTCTAATGTTCTTTTTTTGTTTCTGTTATTAAATTTCAGAAGACAAACCTTAGCATTTTCTAAAAGAAATTATTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11821198 170 + 72422247 GTTTCCCCAGAATGCTAGCCTGATGGGAACTCCACCCCATCCGTTCCAACCTAGTAATGAAAAGTTAGTTTGTCTTTTCTGGTCTCACTTCGTTACACACATCTAGTGTTCTTTTTTTGTTTCTGTTATTAAATTTCAGAAG----ACCTCAGCATTTTCTAGAAGAAA-TAATT i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3780545 170 - 110119387 CTTTCCCCAGAATGCTAGCCTGATGGGAACTCCGCCCCATCCATTCCAACCTAGTAAGGATAATTTAGTTTGTATTTTCTGGTCTCACTTCCTT----ACATCTAGTGTTCTTTTTTCGTTTCTGTTATTAAATTTCAGAAGACAAACCTTGGCATTTTCTAAAAGAAATTA-TT i rheMac2.chr15 I 2 C 0 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I e gasAcu1.chrI 26587479 2646 + 28185914 I a score=30660.000000 s hg19.chr4_gl000194_random 67836 38 + 191469 TTTACCTAAATACATTGGACTTTGGTCTTAATGTGAAG s rheMac2.chr15 3780715 38 - 110119387 TTTACCTAAATACATTGGACTTTGGTCTTAATTTGAAG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11821368 38 + 72422247 TTTACCTAAATACATTGGACTTTGGTCTTAATTTGGAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3254895 38 + 6711082 TTTACCTAAATACATTGGACTTTGGTCTTAATTTGAAG i panTro2.chr4_random C 0 C 0 s gasAcu1.chrI 26590125 38 + 28185914 TTCACCCAAAGAAGTGGGTCTTGGGTCTGGACTTAAGG i gasAcu1.chrI I 2646 C 0 s xenTro2.scaffold_321 125168 32 + 1343416 -TCACCCGAACACATTGGATTTTGGCCTGAGCC----- i xenTro2.scaffold_321 N 0 C 0 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=90426.000000 s hg19.chr4_gl000194_random 67874 297 + 191469 GAATAGGATAAGTGGACT-TT---AAGAGAGCGTTCC---TACTCCTTCTCTTC---CAGTGGCTGCTCTGGGTCCCTGAAAGAGGGTGTGATGTGGACCATCTGGGTT---GTGAAGTGGATTTTGCTGAGCCTGTGTTT--TTTAAGTCCATTAG----TCCTGCCCGAGGCTATGCGCCCTGGAATCCTTGGCTTCACGTCTGGACCACCTTCAGCCAAGTGGTGATGGTGGAGAGGGTCCCCCCA-----TCTTCCAGGACATGTGAGAGTTTGTAGGTGGTGAGATGG--AGGGGGCAGCTTTTAAATCTTCCAGTA--C s panTro2.chr4_random 3254933 297 + 6711082 GAATAGGATAAGTGGACT-TT---AAGAGAGCGTTCC---TACTCCTTCTCTTC---CAGTGGCTGCTCTGGGTCCCTGAAAGAGGGTGTGATGTGAACCATCTGGGTT---GTGAAGTGGATTTTGTTGAGCCTGTGTTT--TTTAAGTCCATTAG----TCCTGCCCGAGGCTGTGTGCCCTGGAATCCTTGGCTTCACGTCTGGACCACCTTCAGCCAAGTGGTGATGGTGGAGAGGGTCCCCCCA-----TCTTCCAGGACATGTGAGAGTTTGTAGGTGATGAGATGG--AGGGGGCAGCTTTTAAATCTTCCAGTA--C i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11821406 292 + 72422247 GAATAGGATAAGTGGCCT-TT---AAGAGAGCGTTCC---TACTC---CTCTTC---CAGTGGCTGCTCTGGGTCCCTGAA--AGGGTGTGATGTGAAGCATCCTGGTT---GTGAAGTGAATTTTGTTGAGCCTGTGTTT--TTCAAGTCCGTTAG----TCCTGCCCGAGACTGTGCGCCCTGGAATCCTTGGCTTTGCCTCTGGACCACCTTCAGCCAAGTGGTGATGGTGAAGAGGGTCCCCCCA-----TCTTCCAGGACGTGTGAGAGTTTGTAGGTGATGAGATGG--AGGGGGCACCTTTTAAATCTCCCAGTA--C i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3780753 296 - 110119387 GAATAGGATAAGTGGCCT-TT---AGGAGAGCGTTCC---TCCTCCTCCTCTTC---CAGTGGCTGCTCTGGGTCCCTGAAGGAGGGTGTGATGTGAACCATCTGGGTT---GTGAAGTGGATTTTGTTGAGCCTGTGTTT--TTTAAGCCCATTAG----TCCTGCCCGAGGCTGTGTGCTCTGGAATCCTTGGTTTCGCCTCTGGACAACCTTCAGCCAAGTGGTGACGGTGAAGAGGGTCCCCCCA-----TCCTCCAGGATGTGTGAGAGTTTGTAGGTGATGAGATGG--AGGGGGCACCTTTCAAATCTT-CAGCA--C i rheMac2.chr15 C 0 C 0 s xenTro2.scaffold_321 125200 247 + 1343416 --------TCATTGGACTCTT---GAGAG---GTTTA---TCCTCCTGCTCAT----AAGT-----------GTCTCTAGAGGACAGGTTGTTATGGATTATCTGAGTC---CTAAATCGGATTTTATTGAGTCTTGGCTT--CCCCTTTACCCCAGA--CCCCTTCCTGTAGATATCTGTTCTG-----------------------CTGCCTCCTGC----------------GCCGGGCCCTTCCGGTTGCTCCTCCGGTAGCTGAGAGAGCCGGTGTACAATGAGCTGGGAGGGGAGCACCTTAGAGAGCCGCCAGCGGCC i xenTro2.scaffold_321 C 0 C 0 s gasAcu1.chrI 26590163 204 + 28185914 GAAC------------CT-TT---CCCAGAGCCCCCC---GACTCCTCTGGCTCACGAAAC------------------------GACATCCTGTGGACAATCTGCGATGTCCTCAAGCGCAGCCTGTGCAGTTCGGGCTTCATCCTGCTGAGGGAGGACTTCCTCCTGAGGACCTTCTGTGAGG--------------------------------------------------GTCGGGCCTCCCCG-----TCCACAGAGTCACCTTCGTCGTTGGGGTTGAAGAGTCGG--AGGGGCCTC--------------------- i gasAcu1.chrI C 0 I 33 s danRer6.chr6 37081 238 + 61647013 GAACAGGTTAG-----AT-TTGGGTCTGGAGAGCTTTGGAGATTCTTCTTTCTC---AAAC-------CT--GTCCATCA---GAGAGGTGCTGTGGACTATCTGTGCC---------CGCAGCCGG---ACTCTGGGCTTCATCTTAGTAAAGGAGGATTTTCTGCGCAGGGGTTTCTGCTTGG------------------CCACGCTGTCCTCATCGCTGCA----------GTCCTGGTTCTGGA-----TCCTCAGAGGC----------CTGAAGCTGGA---CTGC--AGAACCCTC----GACAGCCTCCAGCG--G i danRer6.chr6 N 0 I 31 e choHof1.scaffold_119684 4418 1250 + 5710 I e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=-10818.000000 s hg19.chr4_gl000194_random 68171 24 + 191469 CCACCTCCGCTGCTGGCA-GTG---CTC s rheMac2.chr15 3781049 24 - 110119387 CCACCCCCGCTGCTGGCG-GTG---GTC i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11821698 18 + 72422247 CCACCCCC------GACG-GTG---CTC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3255230 24 + 6711082 CCACCCCCGCTGCTGGCG-GTG---CTC i panTro2.chr4_random C 0 C 0 s choHof1.scaffold_119684 5668 24 + 5710 GGAGCTCAGCTGCTCGAG-ATG---GTC i choHof1.scaffold_119684 I 1250 N 0 s xenTro2.scaffold_321 125447 24 + 1343416 CGAGCCCGTATTCCCTCC-TTC---CTC i xenTro2.scaffold_321 C 0 I 7 s fr2.chrUn 245869480 18 - 400509343 CCATCTCCGG---AGGCG-GCG------ i fr2.chrUn N 0 C 0 s gasAcu1.chrI 26590400 20 + 28185914 CGGCCTCCGGC-CCCGCG-GCA------ i gasAcu1.chrI I 33 C 0 s danRer6.chr6 37350 24 + 61647013 CGCCCTCCGCC-TCTGCGCACGCCC--- i danRer6.chr6 I 31 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=1911.000000 s hg19.chr4_gl000194_random 68195 21 + 191469 TCCCCATCG-TCTTGTCCAGGA s rheMac2.chr15 3781073 22 - 110119387 TCCCCGTCGTCCTCGTCCAGGA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11821716 22 + 72422247 TCCCAGTCGTCCTCGTCCAGGA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3255254 22 + 6711082 TCCCCATCGTTCTTGTCCAGGA i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_321 125478 19 + 1343416 CCCCCTGCG---CTGGGCAGAG i xenTro2.scaffold_321 I 7 C 0 s fr2.chrUn 245869498 11 - 400509343 --------G---AGCTTTGGGT i fr2.chrUn C 0 I 10 s gasAcu1.chrI 26590420 14 + 28185914 -----CGCG---TCCTCCGGGT i gasAcu1.chrI C 0 I 15 s danRer6.chr6 37374 15 + 61647013 ----CCGCG---ATCTCCAGGA i danRer6.chr6 C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=268042.000000 s hg19.chr4_gl000194_random 68216 436 + 191469 CTCCCATCAGGGTCTC-AATCTCTTCTGTGATGCTCTGAC------------TCACATGCTGGGAGGCCCTTTC-CCAATGTAGTCCCTGATGTCCACATCGGCGTCCTATGTCCCCACTAGCAGCTTCACCATCTCCAAG-----GTACATGGCTGCCAAGTGCAGGGCGGTGTAGC----------TCTGGCCTTGCTGTTCCCAGGCAGCAGAGGCTCGTTGGGGAAGTTGA------------------------------------------CCAGCATGGCCATAAGCTCCAGCCT---GCAGTGCTAGGTG--CCTGCG---------------CAGGCAG-----GTGAGG-CTGTGATGAAGCCCAG-AGTGGCCAGCATGCCGG----CTGGCATGGGGACAACCCCCTAAGCTG-TCCACTCCCCATAGGAGGCCGA---GAGCAGCCAGCCGTGCTC--CCTG---------GTCCAGCTCACCCAGCCC--------CACAGCT---CTC------------------CTCCGCGGACGGGAAAGCCAGCGCTGCGCTGCCAGAGTCAC s rheMac2.chr15 3781095 444 - 110119387 CTCCCAGCAGGTTCTCGGATCTCCTCTGTGATGCTCTAAC------------TCACATACTGGGAGGCCCTTTTCCCAGTGTAGTCCCTAATGTCCATATCGGCGTCCTAGGTCCCCACTAGCCGCTTCGCCATCTCCAAG-----GTACACGGCTGCCACGTGCAGGGCGGTGCAGCCCTGC-TGGTCCCGGCCTTGCTGCTCCCAGGCAGCGGAGCCTCCCCGGGGAAGGTGA------------------------------------------CCAGCACGGCCAGAAGCTCCCGCCC---GCGGTGCCAGGCG--CCCGCG---------------CGGGCAG-----GTGCGG-CGGAGATGCAGCCCAG-CGCGGCCGG-----CGG----CCGGCCCAGGAGCAACCCTCTAAGCTG-TCCACTCCCCATCGACGGCCGA---GAGCAGCCAGCCGCGCTC--CCGG---------GTCCGGCTCACCCAGCCC--------CGCCGCT---CTC---------------CGGCCCCGCAGACGGG-AGGCCAGCGCGGGGCCGCCGGAGTCAC i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11821738 449 + 72422247 CTCCCACCAGGGTCTC-GATCTCCTCTGTGATGCTCTGAC------------TCACATACTGGGAGGCCCTTTTCCCAATGTAGTCCCTGATGTCCACATCGGCGTCCTAGGTCCCCACTAGCAGCTTCACCATCTCCAAG-----GTACATGGCTGCCAAGTGCAGGGCGTTGTAGCCCTGC-TTGTCCTGGCCTTGCTGTTCCCAGGCAGCGGAGGCTCGTTGGGGAAGTTGA------------------------------------------CCAGCATGGCCAGAAGCTCCAGCCT---GCGGTGCTAGGCG--CCTGCC---------------CAGGCAG-----GTGAGG-CGGTGATAAAGCCCAG-CGTGGCCAGCAGGCCGG----CTGGCACGGGGGCAACCCCTTAAGCTG-TCCACTCCCCATCGGAGGCCGA---GAGCAGCCAGCCGTGCTC--CCGG---------GTCCAGCTCACCCAGCCC--------CGCAGCTCTCCTC------------------CTCCGCGGACGGGAAAGCCAGCGCTGCGCCGCCAGAGTCAC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3255276 437 + 6711082 CTCCCATCAGGGTCTC-AATCTCTTCTGTGATGCTCTGAC------------TCACATGCTGGGAGGCCCTTTTACCAATGTAGTCCCTGATGTCCACATCGGCGTCCCATGTCCCCACTAGCAGCTTCACCATCTCCAAG-----GTACATGGCTGCCAAGTGCAGGGCGGTGTAGC----------TCTGGCCTTGCTGTTCCCAGGCAGCAGAGGCTCGTTGGGGAAGTTGA------------------------------------------CCAGCATGGCCAGAAGCTCCAGCCT---GCAGTGCTAGGTG--CCTGCA---------------CAGGCAG-----GTGAGG-CTGTGATGAAGCCCAG-AGTGGCCAGCAGGCCGG----CTGGCACGGGGGCAACCCCCTAAGCTG-TCCACTCCCCATCGGAGGCCGA---GAGCAGCCAGCCATGCTC--CCTG---------GTCCAGCTCACCCAGCCC--------CACAGCT---CTC------------------CTCCGCGGACGGGAAAGCCAGCCCTGCGCCGCCAGAGTCAC i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_321 125497 486 + 1343416 CACCCACCAGCCCCTG-TACATCATGGGTCGTGCTTGGGC------------CAAGGTACTGCCAGGCTTTCCTGCCACTGTAGTCCCTTATATCCACATCGGCATCGTATGCCCCTATGAGCAGCTTAATAACGTCCAGGTGTCCGTGCATGGCAGCCAAGTGCAGAGCCGTGTAACCCCCCGCAGCCCGGGCATTGATATTGACGGGCACACGGTGCTGGTGCGCATAGGAGA------------------------------------------GGAGAGCAGCCAGGAGCTCATGCTG---CCCGTGCTTGGCGGCCCAGTG---------------CAGGCAG-----GAGAAGCCGGTGATGAAGTCCCT-GCGGGTGATGAGGCCGGGCTCGTTGCTCAGTAGC--TCCCGTAAGCTC-TCCCAGCGGCCCCGGCA--CGAACTGAGCATCCAGGCGTGTTCCACAGG---------GTCCAGTGCCGCCTGCCCGTGTGCCGCGCCGCC---CTCCTCCTCCTCGTTTCCCGACACCGAAGACGAGCTGTGAAGGGACGAGCTGTCCGAGTCTC i xenTro2.scaffold_321 C 0 C 0 s fr2.chrUn 245869519 483 - 400509343 ----------------------TCTCTCTCACGCTCTCAGAAGCTCCCGGCCTCAGGTAGTGGTGGGGCCTTTTCCCGCAGTTGTCCCTGATGTTGGGGTCGGCGTCATACTCCCCCATCAGCATGGCCATGATGTACTCCTGGTTGTGCAGGGCGGCAATGTGCAGAGGGGTGTACCCGCCGTGGGTTTTGGTGTTAATGTCGATCTGGACTCCCCCCTTCTTGGCCAGATCAATGATCTTCACCAGCATGTCGCCGTTACCCCATTTGGCCGCCCAGTGCAGGGCGGTGAACCCCGACATGAAGTCCCTCTTCTCGGCCAGGTGGCTGTCTGTTAGCAACAGGCCGTAAACGTGCCCCCAGTGACCAGCCGCGCACCTGAGCATCCACTTGTGCTCTGGGTCCTCCAGGGGGacc--gtggag---------------gaggaggc---cctcacctctctgagctcctccgGTGCCTTGTCGCCCCGCACCGCCCGCCT----------CAGCT-----------------------------------------------GCGGCGAGCTGCAGCCGT i fr2.chrUn I 10 I 15 s gasAcu1.chrI 26590449 450 + 28185914 CTCCGATTATGTCCTG-GATATCCACGCTCACACTGTCAG------------TGAGATACTGGCAGGCCTTCCTCCCGCTGTAGTCTCTGACCTCCACGTCTGCGCTGTAGGCCCCCACCAGGAGCTTCACCACCTCCATGTGGTTGTGCATGGCAGCGACGTGCAGAGGCGTGTAACCGGCGTTGGACCGAGCGTCCACGCTGACGGGGGTGTCGTTCTGTTTGGCAAAATTGA------------------------------------------AGATCAGCGCCATCAGCTCGGGGTT---GCCTCGCTTGGCCGCCCAGTG---------------CAAGCAG-----GTGAACCCGGTGACGAAGTCCTT-CCTCAGGATCAGACTGGGCTCCGTGGTGAGGAGGGGGTGC--ATGCTGCCCCACTCCCCGTCCAAGGCACA---CATCATCCACTCGTGTTCCAGCGG---------GTCCAGAGCCACCGGGGT----------CCTGT---CGT------------------CCGGGCAGGAGGA--------GACCAGGGAGGCCGAGTCGC i gasAcu1.chrI I 15 N 0 s oryLat2.chr2 16705097 441 + 31118443 CTGCAATGATGTCTTG-AATGTCTCCTCCTATGCTCTTGT------------TAAGGTAGTGGCAGGCCTTCCGGCCGCTGTAGTCCCTCAGGTTCACGTCGGCATTGTAGGCCCCCACCAGGAGCTTCAGCACGTCCAGGTGTCCCTGCATGGCGGCCAAGTGAAGTGGGGTGTAGCCTGCACTTGTGCGCCCATTCACGCTGGCATCGACGTGATGCCGCTCAGCCGCGGTCA------------------------------------------GGATCTGGACCAACAGTTCCGACTT---GCCGTGCTTGGCGGCCCAGTG---------------CAGGCAG-----GTGAAACCGGTGACGAAGTCCTT-CCTCTGGAGGAGGTTAGGATCCACGTCAAGCAGCCGGCTC--AGGCTGTCCCACTCCCCATCAGAGGAGTA---CATCATCCACTCGTGCTCCAGGGG---------GTCCAAAGCCGCCGGCGT----------CCTCT---CGT------------------CTTCCC-----------------CCAAAGAGTCGGAGTCAC i oryLat2.chr2 N 0 I 17 s danRer6.chr6 37389 432 + 61647013 ---------TGTTTTG-CGCAACGTCGCTCT---------------------TCAGGTACTGACACGCTTTTCTGCCGTAGTAATCCCGAGCTTCCACATCCGCGTCAAGCGCTCCGACTAACAGTTTGACGACCTCCAGGTGGTTGTGAATCGCCGCCAGGTGGAGAGGCGTATATCCGGCGCTGGAGCGCGCGTTCACGTTAACGGAGACCCGGTGTTCTCTGGCGAACCGAA------------------------------------------CGAGCAAGACGATCAGCTCGTGTTT---GCCAAGTTTCGCGGCCCAGTG---------------CAGACAA-----GTGAAGCCCGTCACAAAGTCTTT-CCGAGCCACGAGCGCGGGTTCGGTGTCCAGCAGCGGGCGC--AGGCTCTCCCAGTGCCCGTCAGACGCGCT---CATCATCCATGCGTGCTCCAGCGG---------CTCTAGCGTCACCGCGGC----------GGCCT---CAT------------------AGTCGCTGTCGGC--------CCGCGGACACTCCCTGCACC i danRer6.chr6 C 0 I 8 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=-5395.000000 s hg19.chr4_gl000194_random 68652 33 + 191469 TCGCCTCTGCGGTGTCCTCGGA-----GGAG--GAGCTCC s rheMac2.chr15 3781539 33 - 110119387 CGGCCTCTGGCGGGTCCTCCCC-----GGAG--CAGCTCC i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11822187 33 + 72422247 TCTCCTCTGCGGTGCCCTCGGA-----GGAG--GAGCTCC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3255713 33 + 6711082 TCGCCTCTGCGGTGTCCTCGGA-----GGAG--GAGCTCC i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_321 125983 28 + 1343416 GCATCCC-----GGCCCGAAGC-----AGCG--GGGGGCC i xenTro2.scaffold_321 C 0 C 0 s fr2.chrUn 245870017 28 - 400509343 TCCTCCTCTCG----CTCTGGGG----GGAGGCCTG---- i fr2.chrUn I 15 I 8 s gasAcu1.chrXIV 5959635 33 - 15246461 TCGTCTCCGTGGTCCCCGTGGA-----GGAG--CAGCTCC i gasAcu1.chrXIV N 0 I 8 s oryLat2.chr2 16705555 33 + 31118443 TTCAGGCTGCGGCGCACCTGGAG----GGAG--CTGTCC- i oryLat2.chr2 I 17 N 0 s danRer6.chr6 37829 27 + 61647013 -----------GACTCACCGGAGTCCCGCTG--CTGCTCC i danRer6.chr6 I 8 I 2 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=-53725.000000 s hg19.chr4_gl000194_random 68685 139 + 191469 CAG---------------------------GCTGCTGCCT-------------------------CCAGGACACAGGTTCCTCTTCAAGGGCAGGGCACTGCGC---CTTCCC----AAGTCGCTCAAGTTCTGGCG----GAACGGCCTCGGGGCG----------------GTAGCCCCCCA-------GGAGCTGCCCCTGT------------CCGCCTCCT-----GGCAACCGTGG s rheMac2.chr15 3781572 142 - 110119387 CCG---------------------------GCTGCGGCCT-------------------------CCAGGACACGCGCTCCCCTGCGGGGGCCGGGCGCTGCCC---CTTCTC----AAGTCGCGCAAGCTCGGGCGGAACGAACGGCCTCGGGGCG----------------GCGGCTCTGGA-------GGGGCTGCC-CTGT------------CCGCCTCCC-----GGCAGCCGCGG i rheMac2.chr15 C 0 I 23 s ponAbe2.chrUn 11822220 139 + 72422247 CAG---------------------------GCTGCTGCCT-------------------------CCAGGACACACGCTCCTCTTCAGGGGCGGGGCTCTGCCC---CTTCCC----AAGTCGCTCAAGTTGTGGCG----GAACGGCCTCGGGGCG----------------GTAGCCCCCCA-------GGAGCTGCCTCTGT------------CCGCCTCCT-----GGCAGCCGTGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3255746 190 + 6711082 CAGACACAGGTTCCTCTTCAAGGGCAGGGCACTG-TGCCTTCCCAAGTCGCTCAAGTTCTGTGTCCCAAAACACAGGTTCCTCTTCAAGGGCAGGGCACTTTGC---CTTCGC----AAGTCGCTCAAGTTCTGGCG----GAATGGCCTCGGGGCG----------------GTAGCCCCCCA-------GGAGCTGCCCCTGT------------CCTcctcct-----ggcaaccgtgg i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_321 126011 150 + 1343416 CCG---------------------------GCGG-AACTG-------------------------GGGGGACACGGGATCCC--------GCACACCCCTGCGG---CTGCCCCTTGGAGTC-CTACCGCTGGGAAG----GAAAACCTCCGGGGAGCCAGGGCACTGCTTTAGTGACCC-----------GGGGACGCTCTTAT------------TTCCCTCCTTCTCCTGCGGCTGCTG i xenTro2.scaffold_321 C 0 C 0 s fr2.chrUn 245870053 89 - 400509343 --------------------------------------------------------------------CGTCAGGTGGATCC---------AGTGTCA-GGTCCACTCTGGCC----GGGA------CTCTCAGGGG----------AACCGGGACT----------------CTC---------------------------------AGGGGAAGCCGCGTAC------GGCTTGCTTTG i fr2.chrUn I 8 C 0 s gasAcu1.chrXIV 5959676 123 - 15246461 --------------------------------------------------------------------CGCTCTGCGGTCCC---------TGCTCCGCAGCCGCCTCCTCCC----AGCA-GCTCCATCTCTGGGC----------CCTCTGACCT----------------CTCCCACCTCA-------GGTACTGCCCATGCGGTGGGTGAGGGCCGGGTGAAAGG--GGCTT--TTTG i gasAcu1.chrXIV I 8 C 0 s danRer6.chr6 37858 95 + 61647013 -------------------------------------------------------------------------------------------CGGGCTGCTGCCGAC-CCACCC----GGGG------CTCTCCGGTC----------CATCGCGCTC----------------CTCCCCCCCCGTGGCCGCGGCTCTCTCCT---------------CCGGCTGCTC----GGCTGCTTTCG i danRer6.chr6 I 2 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=-15337.000000 s hg19.chr4_gl000194_random 68824 37 + 191469 ---GGCGGGG-GCTCC----AGGTCC----------TCTCTGGTCTGAGGT---CCTG s ponAbe2.chrUn 11822359 37 + 72422247 ---GGCGGCG-GCTCC----TGGTCC----------TCGCTGGCCCCAGGT---CCCG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3255936 37 + 6711082 ---ggcaggg-gctcc----aggtcc----------tcgctggTCTGAGGT---CCCG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_321 126161 37 + 1343416 ------AGCG-GCTCCCCCTGGGGCT----------TCGGTGA-CGGAGAT---GCTG i xenTro2.scaffold_321 C 0 C 0 s fr2.chrUn 245870142 47 - 400509343 GGGGGCGGCGCGCTCC----CGACCTCCACACGCCTGTTGTATCTCAAAAT------- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIV 5959799 27 - 15246461 GGAAACAGTGTGCACG----TGATCT--------------------GAGAG------- i gasAcu1.chrXIV C 0 C 0 s danRer6.chr6 37953 37 + 61647013 G---CCGCTGTTCGGC----GGATCT----------GTTGCTGTCTGAGTTCTC---- i danRer6.chr6 C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e rheMac2.chr15 3781714 23 - 110119387 I e papHam1.scaffold16121 46142 8317 + 55498 I a score=-12635.000000 s hg19.chr4_gl000194_random 68861 75 + 191469 CATCTG---------GGGTAGGGGCTGGTGGAGCCGGCGAGCTCTT-CTTGCATCCCCGCCGCTCAG-----GGCGGCCC-GTTCAGGGGC s panTro2.chr4_random 3255973 75 + 6711082 CATCTG---------GGGTAGGGGCTGGTGGAGCCGGCGAGCTCTT-CCTGCGTCCCCACCGCTCAG-----GGCGGCCC-GTGCAGGGGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11822396 75 + 72422247 CGTCTG---------GGGTACGGTCTGGTGGAGCCGGCGAGCTCTT-CCTGCGTCCCCGCCGCTTAG-----GGCGGCCC-GTGCAAGGGC i ponAbe2.chrUn C 0 C 0 s rheMac2.chr15 3781737 74 - 110119387 CGTCTG---------GGGCAGGCGCTGGCGGAGCCGG-GAGTCCCT-CCTGCGTCCCCGCGGCTCAG-----GGCGGCCC-GTGCGGGGAC i rheMac2.chr15 I 23 C 0 s xenTro2.scaffold_321 126198 51 + 1343416 --------------------------GGAGGTGACGGCAAGTCCTTGCTTTCCCCCTCGGAGCT---------GTGCCCT-G----GGGAC i xenTro2.scaffold_321 C 0 I 4 s fr2.chrUn 245870189 76 - 400509343 --TCTGCATCTTTTTCGTTCTAAAGCTGGAAAGTTTG----CTCCT-CCGCAGAGCCAGCTCCACAGGAGAGAGCAGCTCCGC-------- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIV 5959826 61 - 15246461 --TGTG---------CGTTTGGGGCCTGACGAGCCTGTGA-CACGT-GGACGGCGTCCGTGCC---------GGCAGCGTCGT-------- i gasAcu1.chrXIV C 0 C 0 s danRer6.chr6 37990 62 + 61647013 CATGTG---------CGCGCGGAGTTC----AGCTGGTGT-TCCGC-CGTTCACACCCTCTTC--AGAAATATGCGG----GT-------- i danRer6.chr6 C 0 C 0 e tupBel1.scaffold_1182.1-172424 81517 30517 + 172424 T e papHam1.scaffold16121 46142 8317 + 55498 I a score=-35120.000000 s hg19.chr4_gl000194_random 68936 61 + 191469 TGGGCTCCC-CCTTGC---CCAGCTC----------------GGCCCTGCC---TGTGGAGCA---C-CTCGGGGACCGCTGTTTCAG s rheMac2.chr15 3781811 58 - 110119387 CGGGCT-CC-CCTCGC---CCGGCTG----------------GGCCCTTCC---CGTGGAGCG---C-CTCGGGA--CGCTGTTTCGG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11822471 61 + 72422247 TGGGCTCCC-CCTCGC---CCAGCTC----------------GGCCCTGCC---TGTGGAGCG---C-CTCGGGGACCGCTGTTTCAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256048 61 + 6711082 TGGGCTCCC-CCTTGC---CCAGCTC----------------GGCCCTGCC---TGTGGAGCA---C-CTCGGGGACCGCTGTTTCAG i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_1182.1-172424 51000 59 + 172424 CGGG-TCCA-CATCACAGGCCAGCTCTGGAGCCACCTTCCCTGGCCCTGAC---TGG---------------------ACTGTCT--- i tupBel1.scaffold_1182.1-172424 T 30517 C 0 s xenTro2.scaffold_321 126253 62 + 1343416 TGGCCGCCT-CATGGTCA-CTAGCCG----------------AGCTCT--C---TGATGAGGG---CGCTCCCGTTCCGCTCTCTCGG i xenTro2.scaffold_321 I 4 N 0 s fr2.chrUn 245870265 40 - 400509343 -GGGGCCCT-CGCTGC---TTGACTC----------------CTCACCTGC---CCCTGAACCA------------------------ i fr2.chrUn C 0 I 35 s gasAcu1.chrXIV 5959887 27 - 15246461 -GGTCCTCTGCACAGG---TCGCTTC----------------TTTCT----------------------------------------- i gasAcu1.chrXIV C 0 I 4059 s danRer6.chr6 38052 67 + 61647013 -GTGTTTCTGCGCCTC---CAGCATC----------------AGCAGTTCCGTAACCTGAGCTGAGC-GTCCGGGCCCGTGCTGCCGG i danRer6.chr6 C 0 C 0 e papHam1.scaffold16121 46142 8317 + 55498 I a score=2592.000000 s hg19.chr4_gl000194_random 68997 69 + 191469 GGAGGGGATGGTGAATGCTGCGCTCCGC---GTTCACGTGGACGCGGGACAGGTCCCAGGGGCGCGGC--CTCA s papHam1.scaffold16121 54459 56 + 55498 GGAGGGCGCGGCGGCTCCTGCGCTCCGT---GGTC-CGTGGACGCGGGACGGGCCCCGGG-------------- i papHam1.scaffold16121 I 8317 N 0 s rheMac2.chr15 3781869 56 - 110119387 GGAGGGCGCGGCGGCTCCTGCGCTGCGT---GGTC-CGTGGACGCGGGACAGGCCCCGGG-------------- i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11822532 68 + 72422247 GGAGGGGATGGTGAATGCTGCGCTCCGC---GTTCACGTGGACGCGGGACA-GTCCCAGGGGCGCGGC--CTCA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256109 69 + 6711082 GGAGGGGATGGTGAATGCTGCGCTCCGC---GTTCACGTGGACGCGGGACAGGTACCAGGGGCGCGGC--CTCA i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_1182.1-172424 51059 50 + 172424 ---GGGGCCTGTGGGTCTTGGATTCCGCCCGGTCCCCTTGG-------------------GACGCGGA--CCTG i tupBel1.scaffold_1182.1-172424 C 0 C 0 s danRer6.chr6 38119 40 + 61647013 TGCAGGGTCATCGGTGTC------------------------CGCCCGCTC--TCCC------CCGGCG-CTC- i danRer6.chr6 C 0 C 0 s fr2.chrUn 245870340 51 - 400509343 ------------------TGGGCTCCGC--GGCTCACCTGTCCGCCGGATC--TCCCCGTGATCCGGCTCCTC- i fr2.chrUn I 35 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=44118.000000 s hg19.chr4_gl000194_random 69066 88 + 191469 GGCGGAG---------GCCCCAC-CAGAACCT-------CTTCCTGAGACGCAGGTACTGGGCGCCATCGACGGGGTCCCTGCAG----TGGCCACAGCGTTCACCCGG s tupBel1.scaffold_1182.1-172424 51109 90 + 172424 ---GGCT---------GCTCCACGCAGAACTG-------CCTTTGGAGGTACACGTACTTGGCGCGGTCTGCGGGGTGGGTGCGAACCTTGGCCACTGCATTGAGCAGG i tupBel1.scaffold_1182.1-172424 C 0 N 0 s rheMac2.chr15 3781925 85 - 110119387 ---GGAG---------GCCCCGC-CAGAACCT-------CTTCCTGAGACGCGGGTACTCGGCGCCATCGGCTGGGTCGGTGCCG----TGGCCACAGCGTCCACCCGG i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11822600 88 + 72422247 GGCGGAG---------GCCCCGC-CAGAACCT-------CTTCCTGAAACGCAGGTACTCGGCGCCATTGGCGGGGTCGGTGCAG----TGGCCACAGCGTCCACCCGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256178 88 + 6711082 GGCGGAG---------GCCCAGC-CAGAACCT-------CTTCCTGAGATGCAGGTACTGGGCGCCATCGGCGGGGTCCGTGCAG----GTGCCACAGCGTTCACCTGG i panTro2.chr4_random C 0 C 0 s fr2.chrUn 245870391 96 - 400509343 --CGCGGCCTGGACGCGCTTCAG-CAAATGCTGGTAGACTTTCTTGAGGACGACATAGCGGACGCCGTCGATT--TCTCTCACCG----TGGCGACGCTGTTGAC---- i fr2.chrUn C 0 C 0 s danRer6.chr6 38159 80 + 61647013 --CGCGG---------GCATCCC-CAAAATCT-------CTTCCTTAGGCAAACGTATTTCTCGCCATTCTCC--TCCTTCACGT----AAGCCACGGTGTCTAC---- i danRer6.chr6 C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=13943.000000 s hg19.chr4_gl000194_random 69154 35 + 191469 AGATACATTTAAACAGTTTTAT------TCTCCTGTTTTTT s rheMac2.chr15 3782010 35 - 110119387 AGACACATTTAAACAGttttat------tctcctgtttatt i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11822688 33 + 72422247 AGATACATTTAAACAGTTTTAT------TCTCCTGTTTT-- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256266 35 + 6711082 AGATACATTTAAACAGTTTTAT------TCTCTTGTTTTTT i panTro2.chr4_random C 0 C 0 s fr2.chrUn 245870487 35 - 400509343 -GAAGGTTTTGAAAAGTTCCCTGTTCCGCTGCTTCT----- i fr2.chrUn C 0 N 0 s danRer6.chr6 38239 33 + 61647013 -GTGACGTTTAAAGGCTTCTCT----CGCCTCTTGTTT--- i danRer6.chr6 C 0 N 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=162634.000000 s hg19.chr4_gl000194_random 69189 325 + 191469 A----------TTTTTTCATTCCAGAAACCATTACTACTATGCAACAAAGTAAAAATATCTAGTTTAAATAATAATTTGATATGGTCAGGTGGGGATGAGTGCACACGTGTGTGTACACACACACGCAGGCTCTAAATGGGATATTTTGGCGGAGCAGAGGGATAAGGCTTTTATTTCGTTGGCGTGTTGAGTTAGAATCGCCCTTCTCACAATTAAATAATTTAAATCAGGAGTTTTATTAAAGCTAATTTGTACAACTAGGCAACATCTTTTCTCCATATATTTATACACATATACACATCTCTAATATTTGCATTTATTACTTCATCTAAAA s rheMac2.chr15 3782045 332 - 110119387 cttatttttatttttTTCATTCCAGAAACCATTACTACTATGCAAAAAAGT--AAACATCTAGTTTAAATAATAATTTGATACGGTCAGGTGGGGATGAGTGCACACGTGTGTGTACACACA-ACACAGGCTCTGAACGGGATATTTTGGCGGAGCAGAGGGATAAGGCTTTTATTTTGTTGTTGTGTTGAGTTAGAATCTCCCTTCTCACAATTAAATAATGTAAATCAGGAGTTTTGTTAAAGCTAATTTGTACAGCCAGGCAACATCTTTTCCCCATATATTTATACATATACACTCATCTCTAATATTTGCACTTATTACTTCACCTAAAA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11822721 324 + 72422247 -----------TTTTTTTATTCCAGAAACTGTTACTACTATGCAACAAAATAAAAATATCTAGTTTAAATAATAATTTGATACGGTCAGGTGGGGATGAGTGCACACGTGTGTGTACACACACACGCAGGCTCTGAATGGGATATTTTGGCGGAGCAGAGGGATAAGGCTTTTATTTCGTTGGTGTGTTGAGTTAGAATCACCCTTCTCACAATTAAATAATTTAAATCAGGAGTTTTGTTAAAGCTAATTTGTACAACTAGGCAATATCTTTTCCCCATATATTTATACACATATACACATCTCTAATACTTGCATTTATTACTTCATCTAAAA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256301 324 + 6711082 A----------TTTTTTCATTCCAGAAACCATTACTACTATGCAACGAAGTAAAAATATCTAGTTTAAATAATAATTTGATACGGTCAGGTGGGGATGAGTGCACATGTGTGTGTACACACACACGCAGGCTCTAAATGGGATATTTTGGCGGAGCTGAGGGATAAGGCTTTTATTTCGTTGGTGTGTTGAGTTAGAATCGCCCTTCTCACAATTAAA-AATTTAAATCAGGAGTTTTATTAAAGCTAATTTGTACAACTAGGCAACATCTTTTCTCCATATATTTATACACATATACACATCTCTAATATTTGCATTTATTACTTCATCTAAAA i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=21566.000000 s hg19.chr4_gl000194_random 69514 43 + 191469 GAGCT------------TGGAAAAAGGGTCCTAGGTC-TTGGCTA-GTTAAGGTAAA s rheMac2.chr15 3782377 45 - 110119387 GAGCT------------TGGAAAAAGAGTCCTAAGTCCTTGGCTAGGTTAAGGTAAA i rheMac2.chr15 C 0 C 0 s ponAbe2.chrUn 11823045 44 + 72422247 GAGCT------------TGGAAAAAGGGTCCTAAGTCTTTGGCTA-GTTAAGGTAAA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256625 43 + 6711082 GAGCT------------TGGTAAAAGGGTCCTAGGTC-TTGGCTA-GTTAAGGTAAA i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_135376 1644 55 + 6881 AGGCTTGACTACTTCAGTGAACAAAGTGCTGTAAATT-TTCTCTA-GTTAAAATTAA i tarSyr1.scaffold_135376 N 0 N 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=93496.000000 s hg19.chr4_gl000194_random 69557 184 + 191469 AATCTATATTTTAAGGTAATAAAAACGTTTGCTATGGACAGAGACATGCAGACACTGTGGGTGAAGCTGATTCATGTTCCATGGAAGGAAATGACGTGGGGTTTTCTAAGGGAAAGCCCAGCATGCTGCAAGG-GAGGGGAGGTCCCAGGAGGGAATTGGAGTCAGCATTAGGATCTAAGTGTCA s rheMac2.chr15 3782422 185 - 110119387 CATCTATATTTTAAAGTAATTAAAACACTTGCTATAGACAGAGACATACAGACACTGTGGGTGAAGCTGATTGATGTTCCGCTGACGGAAATGACATGGGGTTTTCTGAGGGAAAGCCCAGCATGCTACAAGGAGAGGGGAGGTCCCGGGAGGGAACTGTAGTCAGCATTAGGATCTAAGTGTCa i rheMac2.chr15 C 0 N 0 s ponAbe2.chrUn 11823089 185 + 72422247 AATCTATATTTTAAAGTAATAAAAACATTTGCTATGGACAGAGACATGCAGACACTGTGGGTGAAGCTGATTGATGTTCCATTGAAGGAAATGACATGGGGTTTTCTAAGGGAAAGCCCAGCATGCTACAAGGAGACGGGAGGTCCCAGGAGGGAATTGGAGTCAGCATTAGGATCTAAGTGTCA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256668 185 + 6711082 AATCTATATTTTAAGGTAATAAAAACGTTTGCTATGGACAGAGACCTGCAGACACTGTGGGTGAAGCTGATTCATGTTCCACTGAAGGAAATGACATGGGGTTTTCTAAGGGAAAGCCCAGCATGCTGCAAGGAGAGGGGAGGTCCCAGGAGGGAATTGGAGTCAGCATTAGGATCTAAGTGTCA i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=648286.000000 s hg19.chr4_gl000194_random 69741 2525 + 191469 CAGGGGAGTGTATTCCCAAAAAAGACTGTGACTGTTTCTGTGTCCATCCTGAACTGGTTACCATGAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAATTAAAAGAGGAGTTACATGCTGGGGCATTTCTGGTATCTCAACTGGCATCTCAGCTGCTGGTGATGATGGCTATACATTTTCCTCAGTATTCATT-GTGCGTATTTTGAGTTAACAGTCCACCCATTggctgaggcaggtggatcatctgaggtgaagagttcgagaccagcctggccaatatgtgaaactctgtctctactaaaaatacaaaaattagccaggcatggttgcagcacctgtagtcccagctactcgggaggccaagacaggagaattgcttgaatccaggagacagaatttgcagtgagctgagatggaccactgcactccagcttgggcagcagagtgagacttggtctc-----aaaaaaaaaaaGTTATTGTGACATGCTGTACACATTCACAAATTCAGTGTCTCCCAGAAGTCTGAGAttctttttttctttcttttt---tttttttttgagaaggaatttcactcttgttgcccaggctggagtgcagtggtgtgatctcggctaactacaacc----cttcctgggttcaagcgattcttctgcctcagcccaagtagctcctgcctcccaagtagctgggattacaggcatgtgccaccatgcgcagctaactttttatttttagtagagttggggtttctccatgttgatcaggctggtctcgaactcctgatctcaggtgatccacccgccttggcctctcgaagtgctgggattacagccatgagccaccatgcccagccAgaaagttttaaggctatgattattagaccatcatacacacaaaaagtacttaaaaagtctcaggaatgcagtccctcattggcctggtatgacaaagataaaaagaagttggtcgtgaaaatttctgaatgtggtttaagacaaggaaccccagtaagattcagagacaacctagaaaattgaaagacaattttactacccaaatcacccttctataaaaaataatagaagatgtcaaatatgaaaataaaactgtcctctgggccctcaattttctgtgttat-tgggaaggcagacagctactcagcAGTTATATcccataagaatggataacactaaaacaactgaaagcatcaagtattggttagaaagtggaactgat--tctcatacattttcattttagtttaagatggcacaaccacttaggaaaatgtctccctatttcatacaatgccaaatatatacttattttataacccagaaaatccactcttatgtacttaaacccaagaaaagtgaaaatattattacagaaaaatgtgtatatctgatttgttcgtagaaggtttattcatgatagcctcaaatcagaaactgcttttgtgtctatcaatagtggagtggattataaacaaaacaagcaaaggcctcaaacctgtggtatagtcataaaattaagtattacaaaataaaattaatgaataatcaataggagcaaaatga--tgtcacaagcatgtttagtgaatgaacataaaaattatataatttatagtttcacttatgtaaatggtgaaaacagacaaaactatccttttgtggaaagaatcaaaaccatggaagcctctgtgttcaaatactgaatggaaatgggcatgagaaaacgtgtttctgCCAGATCTTCTATATGCCTGATG------------------------------------------------------------------TACATTCACTCGATGTATTTTGCATACATTATTTTTGCAAATAAAACTGAGATAGACGCAAAATAACTCAAGAGAAAATAGCTAGAAATAGGTAGAGTTGGGATAGAAGCCTTGGAAGCTCCCCCCTACCTTGCTCACCTGGCACAGGCTGAGGAAGCCCTGGGACAATGCTGTGAGCGATC----TGAGGGCCTTCCAGGGGAGCCCCGCCAGCCCATGCTGGTGCCCGAGCTGCCCGCTGCCATCTGAATATGTTGCAAAGACAGTGCTGGCCTGGCAACCGGTGACGCTCCATGCCCCACCCCGACCCCCACTTCTACCCAAGTAGCGGCAACCCCAGAGACAGATGCCTGGGCGTCAGTGGCTAAGTCTGGTAGTTGGCCAGGCGGCCAAAGGACGGGAACTGGCCGTTCACCCCATCCCAGTTTCCACGGAGAACTCAACCACCATGGCCCCTGAGCTGACCCTCAGGCC---TGGGCTGTGCTCTGTGCCTGCAAACCTGATGCCATCCAGGGGAGCTCGGCCTTCCCACGCCAGCACCTCAGCTGCTGCAGAAAACTGCAAAACTGCAAGTTGCACACAGGCAGAGATGACGGAGCAACCCCTGACCCTCCGTGCCACTCACCCTACCCGCACACACACTTGCCACGCGGACCCTGAAGCCAGTGCCTGGGCGCCCAAGTCAGGCAGTCCACACAGCAGTGGCACCAGGCTGAAAACCTGCTGCTCAATACCATCCCGGTTACCACGAAGAGCCAGC s ponAbe2.chrUn 11823274 2583 + 72422247 TAGGGGAGTGTGTTCCCAAAAAAGACTATGACTGTTTCTGTGTCCATCCTGAACTGGTTACCATGA--GTGTGTGT---------------TGTGTGTGTGAATTAAAAGAGGAGTTACATGCTGGGGCATTTCTGGTATCTCAACTGGCATCTCAGCTGCTGGTGATGATAGCTATACATTTTCCTCAGTATTCAATGGTGCGTATTTTGAGTTAACAATCCACCCATTggctgaggcaggtggatcatctgaggtgaggagttcgagaccagcctggccaatatgtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggttgcagcacctgtaatcccagctactggggaggccaagacaggagaattgcttgaatccaggagggagaggttgcagtgagctgagatgggccactgcactccagcttgggcagcagagtgagacttggtctaaaaaaaaaaaaaaaaaGTTATTGTGACATGCTGTACACATTCACAAATTCAGTGTCTCCCAGAAGTCTGAGATTCAtttttttttt---------tctttttttgagacggaatttcactcttgttgcccaggctggagtgcaatggtgtgatctcggctaactgcaacctccgcttcgtgggttcaagcgattctcctgcatcagcccaagtagctcctgcgtcccaagtagctgggattacaggcatatgccaccacacccagctaattttttatttttagtagagttggggtttctccatgttggtcaggctggtctcgaactcctgacctcgggtgatccacccgcctcagcctctcgaaatgctgggattacaagcatgagccaccatgcccagctAgaaagttttaaggctatgattattagaccatcacacacacacaaagtacttaaaaagtctcaggaatgctgtccctcattggcctggtatgacaaagataaaaagaagtcggtcgtgaaaatttctgaatgtggtttaggacaaggaaccccagtaagattcagagacaacctagaaaactgaaagaaaattttactacccaaatcacccttctataaaaagtaatagaagatgtcaaatatgaaaataaaactgtcctctgggccttcaattttctgtgttatgggggaaggcagacagctactcagcAGTTATATcccataagaatggataacactaaaacaactgacagcatcaagtattggttagaaagtggaactgattctcccaaaca-tttcattgtagtttaagatggcacaatcacttaggaaaatgtctccccatttcatacaatgccaaatatatacttattttataacccagaaaatccactcttatgtacttaaattcaagaaaagtgaaaatattattacagaaaaacgtgtatatctgatttgtttgtagcaggtttattcatgatagcctcaaatcagaaactgcctttgtgtctatcagtagtggaatggattaaaaacaaaacaagcaaaggcctcaaacctgtggtagagtcataaaattgagtattacaaaataaaattaatgaataatcaacaggagcaaaatgatgtgtcacaagcatgtttagtgaatgaacataaaaattatataatttatagtttcacttacataaatggtgaaaacagacaaaactaaccttttgtggaaagaatcaaaaccatggaagcctctgtgttcaaatactgactggaaatggggatgagaaaacatgtttctgCCAGATCATCTATATGCCTGATGTGCATTCACTCGATGTATTTTGCATATACTAAACATGTTTCTGCCAGATCATCTATATGCCTGATGTGCATTCACTCGATGTATTTTGCATATACTATTTTTACAAATAAAACTGAGATAAAGGCAAAATAACTCAAGAGAAAATAGCTAGAAATAGGTAGAGTTGGGATAGAAGCCTTGGAAACTCCCCCTAACCTTGCCCGCCTGGCACAGGCCGAGGAAGGCCTGGGACAATGCTGTGAGCGACCTGAGTGAGGGCCGTCCAGGGGAGCCCCGCCAGCCCATGCTGGCGCCCGAGCTGCCCGTCGCCATCTGAATATGTTGCAAAGACAGTGCTGGCCTGGCAACCGGTGACACTCCACGCCCCACCCCGACTCCCACTTCTACCCAAGTAGCGGCAGCCCTAGAGACAGATGCCTGGGCGGCAGCGGTTAAGTCTGGCAGTTGGCCAGGCGGCCAAAGGACGGGAACTGGCAGTTCACCCCATCCCAGTTTCCACGGAGAACTCAACCACCATGGCCCCTGAGCGGACCCTCAGGCCTGGTGGACTGTGCTCTGTGCCCGCAAACCTGACGCCATACAGGGGAGCTCCGCCTTCCCGCGCCAGCGCCTCAGCTGCTGCAGAAAACTGCAAAACTGCAAGTTGCACACGGGCAGAGATGAAGGAGCAACCTCTGACCCTCCGCGCCACTCACCCTACCCG----CACAGCTGCCACGCGGACCCTGGGGCCGGTGCCTGGGCGCCCAA--CAGGCAGTCCGCACAGCAGCGGCACCAGGGTGAAAACCTGCTGCTCAATACCATCCCGGTTACCACGAAGAGCCAGC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3256853 2531 + 6711082 CAGGGGAGTGTGTTCCCAAAAAAGACTGTGACTGTTTCTGTGTCCATCCTGAACTGGTTACCATGA--gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAATTAAAAGAGGAGTTACATGCTGGGGCATTTCTGGTATCTCAACTGGCATCTCAGCTGCTGGTGATGATGGCTATACATTTTTCTCAGTATTCAAT-GTGCGCATTTTGAGTTAACACTCCACCCATTggctgaggcaggtggatcatctgaggtgaagagttcgagaccagcctggccaatatgtgaaactctgtctctactaaaaatacaaaaattagccaggcatggttgcagcacctgtaatcccagctactcgggaggccaagacaggagaattgcttgaatccaggagacagaatttgcagtgagctgagatggaccactgcactccagcttgggcagcagagtgagacttggtctc--aaaaaaaaaaaaaaGTTATTGTGACATGCTGTACACATTCACAAATTCAGTGTCTCCCAGAAGTCTGAGATTCtttttttctttctttctttgtttttttttgagaaggaatttcactcttgttgcccaggctggagtgcactggtgtgatctcagctaactacaacc----cttcctgggttcaagtgattctcctgcctcagcccaagtagctcctgcctcctaagtagctgggattacaggcatgtgccaccatgcgcagctaattttttatttttagtagagttggggtttctccacattgatcaggctggtctcgaactcctgaactcaggtgatccgcctgccttggcctctcgaagtgctgggattacagccatgagccaccatgcccagccAgaaagttttaaggctatgattattagaccatcatacacacaaaaagtacttaaaaagtctcaggaatgcagtccctcattggcctggtatgacaaagataaaaagaagttggtcgtgaaaatttctgaatgtggcttaggacaaggaaccccagtaagatttagagacaacctagaaaattgaaagataattttactacccaaatcacccttctataaaaaataatagaagatgtcaaatatgaaaataaaactgtcctctgggccctcaattttccgtgttat-tgggaaggcagacagctactcagcAGTTATATcccataagaatggataacactaaaacaactgacagcatcaagtattggttagaaagtggaactgattctctcaaatattttcattgtagtttaagatggcacaaccacttaggaaaatgtctccctatttcatacaatgccaaatatatacttattttataacccagaaaatccactcttatgtacttaaactcaagaaaagtgaaaatattattgcagaaaaatgtgtatatctgatttgtttgtagcaggtttattcatgatagcctcaaatcagaaactgcttttgtgtctatcaatagtggagtggattataaacaaaacaagcaaaggcctcaatgctgtggtatagtcataaaattgagtattacaaaataaaattaatgaataatcaataggaacaaaatga--tgtcccaagcatgtttagtgaatgaacataaaaattatataatttatagtttcacttatgtaaatggtgaaaacagacaaaactatccttttgtggaaagaatcaaaaccatggaagcctctgtgttcaaatactgaatggaaatgggcatgagaaaacgtgtttctgCCAGATCTTCTATATGCCTGATG------------------------------------------------------------------TACATTCACTCGATGTATTTTGCATATACTATTTTTGCAAATAAAACTGAGATAGACGCAAAATAACTCAAGAGAAAATAGCTAGAAATAGGTAGAGTTGGGATAGAAGCCTTGGAAGCTCCCCCCTACCTTGCTCACCTGGCACAGGCCGAGGAAGCCCTGGGACAATGCTGTGAGTGATC----TGAGGGCCTTCCAGGGGAGCCCCGCCAGCCCATGCTGGTGCCCGAGCTGCCCGCCGCCATCTGAATATGTTGCAAAGACAGTGCTGTCCTGGCAACTGGTGACGCTCCATGCCCCACCCCGACCCCCACTTCTACCCAAGTAGCGGCAACCCCAGAGACAGATGCCTGGGCAGCAGCAGCTAAGTCTGGTAGTTGGCCAGGCGGCCAAAGGACGGGAACTGGCCGTTCACCCCATCCCAGTTTCCACGGAGAACTCAACTACCATGGCCCCTGAGCGGACCCTCAGGCC---TGGGCTGTGCTCTGTGCCTGCAAACCTGATGCCATCCAGGGGAGCTCCACCTTCCCACGCCAGCGCCTCAGCTGCTGCAGAAAACTGCAAAACTACAAGTTGCACACAGGCAGAGATGACGGAGCAACCCCTGACCCTCCGTGCCACTCACCCTACCCGCACACACACCTGCCACGCGGACCCTGAGGCCAGTGCCTGGGCGCCCAAGTCAGGCAGTCCGCACAGCAGTGGCACCAGGGTGAAAACCTGCTGCTCAATACCATCCCAGTTACCACGAAGAGCCAGC i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=27381.000000 s hg19.chr4_gl000194_random 72266 58 + 191469 CCTGGTGGCCCCTGAGTTCTTGGAGGAGGCCAAGTCACAGCAACCCCTCAAGTGGGTG s ponAbe2.chrUn 11825857 58 + 72422247 CCCGGCGGCCCCTGCGTTCTTGGAGGAGGCCAAGTCAGAGCAACCCCTCAAGTGGGCG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3259384 58 + 6711082 CCTGGTGGCCCCTGAGTTCTTGGAGGAGGTCAAGTCACAGCAACCCCTCAAGTGGGTG i panTro2.chr4_random C 0 C 0 s calJac1.Contig8932 5319 58 + 78198 CCTGATGGCCTCTGCGCTCTTGGAGGAGGCCAAGGCACAGCAGACCCTCAGGTGGGCG i calJac1.Contig8932 N 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=61196.000000 s hg19.chr4_gl000194_random 72324 94 + 191469 GGCGATGCACTTGACCCTGAGGACATCAGGTACCAGGCCTGCCAGCTGACTCCAGCATCGGAGCCGCAGCTGCAGTCTAGACGTGGTGCACCGG s panTro2.chr4_random 3259442 94 + 6711082 GGCGATGCACTTGACCCTGAGGACATCAGGTACCAGGCCCGCCAGCTGACGCCGGCATCGGAGCCGCGGCTGCAGTCTAGATGTGGTGCACCGG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11825915 94 + 72422247 GGCGATGCGCTTGAACCTGAGGACATCAGGTACCAGGCCCGCCAGCTCACGCCGGCATCGGAGCCGCAGCTGCAGTCTAGACGTGGTGCACCGG i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 9 94 + 4015 GGCGATGCACTTGGCCCTGAGGACATCAGGTACCAGTCCTGCCAGCTCCCGCAGGTGTCTGAACCGCAGCTGCATCCTAGACGTGGCACACGGG i papHam1.Contig357698 N 0 C 0 s calJac1.Contig8932 5377 86 + 78198 GGCAATGCACTTGACCCTGAGGCCATCAGGTACCCGGCCCCCCACCCACCTCTGGTGCCTGAGTCACCCCTGCAGCCTAGACGTGG-------- i calJac1.Contig8932 C 0 I 9 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=29667.000000 s hg19.chr4_gl000194_random 72418 34 + 191469 CAATAAGTGACTGGACACCCCAGACCAGGCCCGC s panTro2.chr4_random 3259536 34 + 6711082 CAGTAAGTGACTGGACACCCCAGACCAGGCCCGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11826009 34 + 72422247 CAGCAAGTGACTGGACACTCCAGACCAGGCCCGC i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 103 34 + 4015 CAGCAAGTGACTGGACACCCCAGGCCAGGCCCGC i papHam1.Contig357698 C 0 C 0 s calJac1.Contig8932 5472 34 + 78198 CAGCAAGTGGCTGGACACCCCAGACCAGGCCCAC i calJac1.Contig8932 I 9 I 53 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=24235.000000 s hg19.chr4_gl000194_random 72452 56 + 191469 CCCCAAGTAGCGTGGATCTTGAGGCCAGA-CCCCTAGGCGGCAAAATCAGGCGACGG s papHam1.Contig357698 137 55 + 4015 CCCCTAGCAGCGTGGATCCTGAGGCCAGA-CACCCAGGCGGCAAAGTCGGGCCTC-G i papHam1.Contig357698 C 0 C 0 s ponAbe2.chrUn 11826043 57 + 72422247 CCCCCAGTAGCGTGGATCCTGAGGCCAGACCCCCCAGGCGGCAAGATCAGGCAACGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3259570 56 + 6711082 CCCCCAGTAGCGTGGATCTTGAGGCCAGA-CCCCCAGGCGGCAAAATCAGGCGACGG i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig8932 5506 53 + 78198 I a score=183643.000000 s hg19.chr4_gl000194_random 72508 260 + 191469 GCCCCGCCAGCAGCCGCTCAGTTTCATCCATGTGGATACAGAGTGCCCAGCTCCCGGGCCCAGGATCCAGAGAGATGCCCAAGAGGAGTGGAACTTGAGGCCAGGTGGGCTGTGCGCTCTGCGACCCTGAGGCCATCCAAGGGAAGCTCCGCCGTCCCAC-GCCAGTGCCAGATCTGCAGCTGCAAACTGCG-CATGGGGCACTGGCAGCAGTGAGGGCTGGTGGGGGAAGGAGCAGCCCCTGACTCTGCCCCCATGCCTCT s panTro2.chr4_random 3259626 260 + 6711082 GCCCCGCCAGCAGCCGCTCAGTTTCATCCATGTGGATACAGAGTGCCCAGCTCCCGGGCCCAGGATCCAGAGAGATGCCCAAGAGGAGCGGAACTTGAGGCCAGGTGGTCTGTGCGCTCTGCGACCCTGAGGCCATCCAAGGGAAGCTCCGCCATCCCAC-GCCAGTGCCAGATCTGCAGCTGCAAACTGCA-CATGGGGCACTGGCAGCAGTGAGGGCTGGTGGGGGAAGGAGCAGCCCCTGACTCTGCCTCCATGCCTCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11826100 260 + 72422247 GCCCCGCCAGCAGCCGCTCAGTTTCATCCGTGTGGATACAGAGTGCCCAGCGCCAGGGCCCAGGATCCAGAGAGATGTCCAAGAGGAGCGGACCTTGAGGCCAGGTGGGCTGTACGCTCTGCGGCCCTGAGGCCATCCAAGGGAAGCTCCGCCATCCCGC-GCCAGTGCCAGATCTGCAGCTGCAAACCGCG-CGTGGGGCACTGTCAGCAGTGAGGGCGGGTGGGGGAAGGAGCAGCCTCTGCCTCTGCCTCCATGCCTCT i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 192 257 + 4015 GCCCCATCAGTGACCGCTCAGTTTCATTGGTGTGGATACAGAGTGCCCAGCGCCAGGGCCCAGGATCAGGAGAGATGTCCAAGAGAAGCGGATCTTGGGGCCAGGTAGGCTGTGCACTCAGCGACCCTGACACTATCCAGTGGAAGCTCCGCCATCCCGCAGCAGGTGCCAGATCTGCAGCTGCAAACTGCGCCATCAGGCACTGGCAGCGGTGAGGGCCGGTGGGGGAAGAAGAAGTCT-TGACTTT----CTATGCCTTT i papHam1.Contig357698 C 0 C 0 s calJac1.Contig8932 5559 254 + 78198 GCCCCGCCAGCAGCCGCTCAGTCTCATC-ATGTGGATGCAGAGTGCCCAGCTCAGGGGCCCAGGATCCGGAGAGGTGTCCAAGAGGAGTGGACCCTCAGTCCAGATGGGCTGTGCACTCGGTAACCCTGATGCCACCCAAGGGAAGCTCCGCCATCCCCT-GCTAGCACCGGAGCTGCACCTGCAAACTGCG-CATCCGGCATGGGCAGCAGCGGGGACCGGT-GGGGAAGGAGCAACCCCTGACTTT----CCATGTGTCT i calJac1.Contig8932 I 53 I 704 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=53209.000000 s hg19.chr4_gl000194_random 72768 72 + 191469 CCAGCTACCTGACACTAGCCACACAGACTCCAGGGCCAGAGCCTCAGCG-TGAAGCCGGGCCATCTGCGAAGC s panTro2.chr4_random 3259886 72 + 6711082 CCAGCTACCTGACACTAGCCACACAGACTCCCAGGGCAGAGCCTCAGCG-TGAAGCCGGGCCATCTGCGAAGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11826360 72 + 72422247 CCAGCTACCTGACACTAGCCACACAGACTCCAGGGCCAGAGCCTCAGCG-TGAAGCCAGGCAGTCCGCGAAGC i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 449 72 + 4015 CCCGCTACCCGATACTAGCAACACAGACTCCAGGGCCAGAGCCTCAGTG-TGAAGCCAGGCCATCCACGAAGC i papHam1.Contig357698 C 0 C 0 s calJac1.Contig6018 98175 72 + 137767 CCAGCAACCTGACACTAACTACACAGACTACAGGGCTAGAGCCTCAGTGCTGAAGCCCGGCCATC-GCGAAGC i calJac1.Contig6018 n 704 I 103 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=18191.000000 s hg19.chr4_gl000194_random 72840 51 + 191469 CACCCAGGTGGCCACGGAGTGCCCTTGCCAGCACCCTATCTCCCTTCCGAG s panTro2.chr4_random 3259958 48 + 6711082 CACCCNAGTGG-CGCGNAGTGCCCTTG-CAGCA-CCTATCTCCCTTTCGAG i panTro2.chr4_random C 0 I 257 s ponAbe2.chrUn 11826432 51 + 72422247 CACTCAGGTGGCCGCGGAGTGCCCTTGCCAGCGCCCTATCTCCCTTCAGAG i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 521 51 + 4015 TACTCTGGTGGCCACGGAGTACCCTTGCCAGCACCCGATCTCCCTTACAAG i papHam1.Contig357698 C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig6018 98247 103 + 137767 I a score=12682.000000 s hg19.chr4_gl000194_random 72891 52 + 191469 GAGGAGCGGGGCGGGCTGCAAGGCCAGACAGGCCCTCCTTCTCAGGCCGGGC s papHam1.Contig357698 572 52 + 4015 GAGGAGCTGGGCTAGCTTCAAGACCAGACGGGTCCTCCTCCTCAGGCCGGGC i papHam1.Contig357698 C 0 C 0 s ponAbe2.chrUn 11826483 52 + 72422247 GAGGAGCGGGGCGAGCTGCAAGGCCAGACAGGCCCTCCTTCTCAGGCCGGGC i ponAbe2.chrUn C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig6018 98247 103 + 137767 I e panTro2.chr4_random 3260006 257 + 6711082 I a score=-1384.000000 s hg19.chr4_gl000194_random 72943 12 + 191469 TGGCGGCGCTCC------------------------------------------ s ponAbe2.chrUn 11826535 12 + 72422247 TGGCTGCGCGCC------------------------------------------ i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 624 12 + 4015 TGGCTGCGCGCT------------------------------------------ i papHam1.Contig357698 C 0 C 0 s calJac1.Contig6018 98350 54 + 137767 GGGAGGCACGCCTGAGACCCTGAACCTGCGATCCTTCACCTGCGATCCTGCACC i calJac1.Contig6018 I 103 n 103 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e panTro2.chr4_random 3260006 257 + 6711082 I a score=18104.000000 s hg19.chr4_gl000194_random 72955 125 + 191469 TGCGATCCTGGGGACGCCCGGGCGATCCCAAGAGGACCTGCGAGCCCATCGGCGCCCGCCCAGAGCTGCAGCCCCACCTGCCAGCGCGCGCCACCAGGGAACGGCTTCCGGGAGCCGGGCAGCAA s papHam1.Contig357698 636 112 + 4015 TGCAGTCCTGGGGCCCTCCCGGCGAGCCCAGGAAAACCCGCGAGCCCAGCGGCGCCCACCTGGAGCTGCAGCGCCACCTGCTGGCGTGCTCAGCCTGCAAGCGAC-TCCGGAA------------ i papHam1.Contig357698 C 0 C 0 s ponAbe2.chrUn 11826547 107 + 72422247 TGCGATCCTGGGGCCGCCCGG------------------GCGAGCCCATCGGCGCCCGCCCAGAGCTGCAGCCCCACCTGCCGGCGCGCGCCGCCCGGGAGCGGCTTCCGGGAGCCGGGCAGCAA i ponAbe2.chrUn C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig6018 98404 103 + 137767 I e panTro2.chr4_random 3260006 257 + 6711082 I a score=57555.000000 s hg19.chr4_gl000194_random 73080 168 + 191469 CCGCGGTGCATGCGCGCGCCCAACGGCTTTGCGAGGCTCACTCTGTCTGAGAGGTCGGAGGCTGCGAGTGTCACTGCTGAAGGCTGTGGTGGACCGGGCTGGATCATGGACTGTGGAGTAGATCACAGATTTGGGATCGCGGATTGGGGGTT-GATCACAGATTTGGGT s panTro2.chr4_random 3260263 150 + 6711082 CCGCGGGGCAGGCGCGCCCTCAACGGCTATGCGAGGCTCACTCGGTCTGAGAGGTCGGAGGCTGCGAGTGTCGCTGCTGAAGGCTGTGGTGGACTGGGCTGGATCATGGACTGTGGAGTAGATCACAGATTTGGGATCGCGGATCGGGGG------------------- i panTro2.chr4_random I 257 I 20 s ponAbe2.chrUn 11826654 169 + 72422247 CCGCGGTGCAGGCGCGCGCCCAACGGCTTTGCGGGGCTCACTCGGTCTGAGAGGTCGGAGGCTGCCAGTGTTGCTGCTGAAGGCTGTGGTGGACCGGGCTGGATCGCGGATTGTGGAGTAAATCACAGATttggaatcgcggattgggggttggatcgcggattggggg i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 748 135 + 4015 --GCGGTGCAGACGC-CGCCCAACCGCTTTGCCAGGCTCACTTGGTCTGAAGTGTTGGAGG------------CTACTGAAGGATGTGGTGGACCGGGCTGGATCGCGGATTTTGGACTAGATCATAGATTTGAGTTCACCGATTGGGGC------------------- i papHam1.Contig357698 C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig6018 98404 103 + 137767 I a score=100064.000000 s hg19.chr4_gl000194_random 73248 278 + 191469 TTGGATCAGGGATTTGGGGTTGGATAGGGGATTTGGGG-CTGGGTCGGCCGGGGTCGGGGGAGGGGGTGGGTGAAAA-GGTGACAGGGAGGTCGGCCGGGGTCGGGGGAGGGGGGTGGTGAAAAGGTGACAGGGAGCTGCCCCCGCTCAAGAGCCGGAGGTTGGGGGTCTG---AGAAGTCACCACTATGAAGTTATTCGGCTTCGGGAGCCGCAGGGGCCAGACAGCCCACGGCTCCATAGAACATGTCTACACGGGTTCCAGATACCGAATCTGGGACTCC s papHam1.Contig357698 883 240 + 4015 TTGGATCACGGATTTGGGGTTGGTTCGGGGATTTGGGG-CTGGTTAGGCGGGGGCGGAGGG------------------------------------------GGGTGGTGGTGGTGGTGAAAAGGTGACAGGGAACTGCCCCCACTCAAGAGACGGTGGTTGGGGGTTTGACAGAAAGTCACCACCATGAAGTTGCTCGGCTTCGGGAGCCACATGGGCCAGATGGTCTTGAGCTCCATAGGCCGCATCTACACGGATTCCGGGTACTGAATCCGGGATGCC i papHam1.Contig357698 C 0 C 0 s ponAbe2.chrUn 11826823 235 + 72422247 ttggatcggggatttggggtgggataggggatttgggg-ctgggtcggccgg-----------------------------------------------ggtcgggggaggggGGTGGTGAAAAGGTGACAGGGAGCTGCCCCTGCTCAAGAGCCGGTGGTTGGGGGTCTGAGAAGAAGTCACCACTATGAAGTTATTCGGCTTCGGGAGCCGCAGGGGCCAGACGGCGCAGGGCTCCATAGACCATGTCTACACGGGTTCCGGATACCGAATCCGGGACTCC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3260433 280 + 6711082 TTGGATCAGGGATTTGGGGTTGGATAAGGGATTTGGGGGCTGGGTCAGCCGGGGTCGGGGGAGGGGGTGGGTGAAAAAGGTGACAGGGAGGTCGGCCGTGGTCGGGGGAGGGGGGTGGTGAAAAGGTGACAGGGAGCTGCCCTCGCTCAAGACCCGGAGGTTGGGGGTCTG---AGAAGTCACCACTATGAAGTTATTCGGCTTCGGGAGCCGCAGGGGCCAGACAGCCCACGGCTGAATAGAACATGTCTACACGGGTTCCGGATACCGAATCCGGGACTCC i panTro2.chr4_random I 20 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig6018 98404 103 + 137767 I a score=78721.000000 s hg19.chr4_gl000194_random 73526 104 + 191469 GAACTGCAGAAGATCCACAGGGCAGCTGTCAAGGGCGACGCCGCGGGGGTGGAGTGCTGCCTGGCGCGCAGGAGCGGAGACCTGGATGCCCCGGACAAGCAGCA s panTro2.chr4_random 3260713 103 + 6711082 GAACTGCAGAAGATCCACAGAGCAGCTGTCAAGGGCGACACCACGGGGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACCTG-ATGCCCTGGACAAGCAGTA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11827058 103 + 72422247 GAACTGCAGAAGATCCACAAGGCGGCTGTCAAGGGCGACGCCGCGGAGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACTGG-ACGCCCCGGACAAGCAGCA i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 1123 104 + 4015 GAACTGCAGAAGATCCAGAGGGCGGCTGTCAAGGGCGACGCCGCGGAGGTGGAGTGCTGCCTGGCGCTCAGTAACGGAGACCTGGACGCCCTGGACAAGCAGCA i papHam1.Contig357698 C 0 C 0 s calJac1.Contig8932 6517 102 + 78198 GAACCGCGGAAGATCCACAGGGCGGCTGTCAGGGGCGACGCCCGGGAGATGGA--GCTGCCTGGCGCGCAGGAGCGGAGACCTGGACGCCCTGTACGAGCCGCA i calJac1.Contig8932 I 704 N 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=141440.000000 s hg19.chr4_gl000194_random 73630 302 + 191469 CAGGTAGCGGGGACTCAG-CCCGGGGTGGGAGGGGGTCCCCAGGCCTGGCTTCCCCACTGCCCCTGGGACGGGGCCTTTCAGGGCTCTGGGCACCCTCAGAGCGGCGGAGCCAAACGGACTCTCAGCTGTTTTCCATCCCTCATAATTCCATGGCTGGAGCAGTTGGAGAATTTGAGTGATTTAACTCACAAAGTTAAGCATACACAGTGTTGTTATTTTTAACGTACACGTTGAAAACATGGTTTATATACATTATAGGAGGTGCCTAATGAGAGAACTTGTTCCCCTATCAAAAATACCGT s papHam1.Contig357698 1227 300 + 4015 CAGGTAGCACGTTCTCAGCCCCAGGGTGGAAGGGGGTCCCCAGGCCCGGCTTCCCCGCAGCCCCTGTCACTGGACCTTGGAGGGCGCCACGCATTCTCCAAGCGGCAGAGCCAAACGGGCCCACTGCTGTTTTCCATCCCTCATAATTCCCTGGCTGGAGCAGGTGGAGAAGATGAGTGATTTAACTTACAAAGTTAAGCATATACGGTGTT-TTATTTTTAATG-ACACCTTTAAAACATGGTTTATATACATTATAGGAGGCGCCTAATGAGAAAACTCATT-CCCTATCAAAAATACCGT i papHam1.Contig357698 C 0 I 790 s ponAbe2.chrUn 11827161 302 + 72422247 CAGGTAGCGGGGGCTCAG-CCCGGGGTGGGAGGGGGTCCCCAGGCCCGGCTTCCCCACAGCCCCTGGGACGGAGCCTTGCAGGGCTCCGGGCACCCTCGGAGCGGCGGAGCCAAACGGACTCTCAGCTGTTTTCCATCCCTCATAGTTCCCTGGCTGGAGCAGTTGGAGAATTTGAGTGATTTAACTCACAAAGTTAAGCATATACAGTGTTGTTATTTTTAACGTACACGTTTAAAACATGGTTTATATACATTATAGGAGGTGCCTAATGAGAGAACTCATTCCCCTATCAAAAATAACGT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3260816 302 + 6711082 CAGGTAGCGGGGACTCAG-CCCGGGGTGGGAGGTGGTCCCCAGGCCCGGCTTCCCCACTGCCCCTGGGACGGGGCCTTTCAGGGCTCTGGGCACCCTCAGAGGGGCGGAGCCAAACGGACTCTCAGCTGTTTTCCATCCCTCATAATTCCATGGCTGGAGCAGTTGGAGAATTTGAGTGATTTAACTCACAAAGTTAAGCATACACAGTGTTGTTATTTTTAATGTACACGTTGAAAACATGGTTTATATACATTATAGGAGGTGCCTAATGAGAGAACTCGTTCCCCTATCAAAAATACCGT i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=10846.000000 s hg19.chr4_gl000194_random 73932 40 + 191469 GAGTTATTTCAGTAGGCAAAAAGTTCTCAGATAAGAGAGC s panTro2.chr4_random 3261118 40 + 6711082 GAGTTATTTCAGCAGGCAAAAAGTTCTCAGATAAGAGAGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11827463 40 + 72422247 GAGTTATTTCAGCAGGCGAAAAGTTCTCAGATAAGAGAGC i ponAbe2.chrUn C 0 C 0 e papHam1.Contig357698 1527 790 + 4015 I e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=8332.000000 s hg19.chr4_gl000194_random 73972 59 + 191469 TTACTTGaaaaatatttactat--attatatatatat------------------atGTATGTATGTATTTTCT--GATG--A s ponAbe2.chrUn 11827503 53 + 72422247 TTACTTGaaaaatatttactat--attatatatatat--------------------------atattttttCA--GATGAAA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3261158 77 + 6711082 TTACTTGAAAAATATTTACTAT--ATtatctatctatctatctatctatctatctatctatatatatatATTCA--GATG--A i panTro2.chr4_random C 0 C 0 s otoGar1.scaffold_65263.1-8640 3064 67 + 8640 TTCTTTGGATAAAATCTAGCATCCGTTCTATATCAAC--------------GTACACCTGTGCATATGTGTTCTCTACTG--A i otoGar1.scaffold_65263.1-8640 N 0 N 0 e papHam1.Contig357698 1527 790 + 4015 I e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=21271.000000 s hg19.chr4_gl000194_random 74031 59 + 191469 AAAGTATGTTTTCATTTTATAGGGAATTCATTATAttcttttttttt-gtttttgagtcg s papHam1.Contig357698 2317 42 + 4015 AAAGTATGTTTTCATTTTATAGGGAATTCATTATATTCTTTt------------------ i papHam1.Contig357698 I 790 I 50 s ponAbe2.chrUn 11827556 53 + 72422247 AAAGTATGTTTTCATTTTATAGGGAATTCATTGTAttcttttttttt-------gagtcg i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3261235 60 + 6711082 AAAGTATGTTTTTATTTTATAGGGAATTCATTATAttcttttttttttgtttttgagtcg i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=100527.000000 s hg19.chr4_gl000194_random 74090 196 + 191469 gagtctcacttctttgcccaggctggtgtccaatggcacaatcttggctcactgcaacctctgcctgccgggttcaagcaattctcctacctcagcctcccaagtagcttggattacaggcaggtgccagcgtgcctggctaatttttgtatatttagtagagagggggtttcaccacgttggccaggctggtctc s papHam1.Contig357698 2409 195 + 4015 gagtctcacttctttgcccaggctagtgtccagtggcacagtcttggctcactgcaccctctgtctcccagtttcaagccattctcctccctcagcctcccaagtagctgggattacaggcaggtgccagcatgcctgactaatttttgtatttttagtagaga-ggggtttcaccatgttggtcaggctggtctc i papHam1.Contig357698 I 50 C 0 s ponAbe2.chrUn 11827609 196 + 72422247 gagtctcgcttctttgcccaggctggtgtccaatggcacaatcttggctcactataacctctgcctgctgggttcaagcaattctcctacctcagcctcccaagtagctgggattacaggcaggtgccagcatgcctggctaatttttgtatatttagtagagagggggtttcaccacgttggccaggctggtctc i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3261295 196 + 6711082 gagtctcacttctttgcccaagctggtgtccaatggcacaatcttggctcactgcaacctctgcctgccgggttcaagcaattctcctacctcagcctcccaagtagcttggattacaggcaggtgccagcgtgcctggctaatttttgtatatttagtagagagggggtttcaccacgttggccaggctggtctt i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=47195.000000 s hg19.chr4_gl000194_random 74286 61 + 191469 gaactcctgacctcaagtgatctgcccgcctccgcctcccaaagtgctgggattacaggtg s panTro2.chr4_random 3261491 61 + 6711082 gaactcctgacctcaagtgatttgcccacctccgcctcccaaagtgctgggattacaggtg i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11827805 61 + 72422247 gaactcctgacctcaagtgatctgcccacctccgcctcccaaagtgctgggattacaggtg i ponAbe2.chrUn C 0 C 0 s papHam1.Contig357698 2604 61 + 4015 aaattcctgatctcaagtgatctgcctgccttggcctcccaaaatgctatgattacaggtg i papHam1.Contig357698 C 0 C 0 s micMur1.scaffold_3557 129004 61 - 165481 gaactcctgatctagagcaatccgcccgcctcggcctcccagagtgctaggattacaggcg i micMur1.scaffold_3557 N 0 N 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=451855.000000 s hg19.chr4_gl000194_random 74347 988 + 191469 tgagccaccgcgcccggccTATGTTGTTTATTATATATCATAAGTtatatatatatatatatatatatataactgatacgtatac---atatataccagatataatatgtcatatatatCAGTTATATATACACATTAGA-------------------------------TGAAAAGTACGTTTTCATTTGACAGGGAATTCTTTCAAATCAAATCATCAAACACTCTAAAATTGGGCAAAGTACACTTTTCCAGATCTGCAAGTTACTTGTGTACATAGGAAAAAGTCCTTCGCATTTCTGGTATAAGAATTTAAATTAAAAGAGGAATGAAACAGTTTTCTATCCACAATATTTGTGAGGATGTTTTATACTCCTGCTTAAAGTTTAAGTTGCTGATTACTTTTCAAATAGATAATTTGGTGGTAAGTACTACAATTAAAAAATATGTATGCCCTTTACCCATCAATTCCATTATACTAAAACACCCTTAGGAAATAAAGATACATGCACTTTATTTTTCACCTCACTTATTTTAAAAAGAACCCAAAGAATGGATCCCATAAATAAACTTCAGTTGCATCCACAGGATGGAATAATATGTGACCATTGAAGGTGGCAATAGATACAGAAGTATATTGATGTGCGAAGATGTATTTTGTTATAGCTAGTGAG--AAAAAAATCAATTAAGTTATACAT----ACAAACATACTATGGTCTTGTTTTATCAAAAAATATGTACAAAATATAAAATTTGTAATTTCTGAGCATTTGTATTTTAAGTAAAGTTCTTTTCCTTTTTCTTATCTGTGATTGCTGCAGTAAGCATGTACAAAACTTCTAGT-AAAGTTTATTAATAAAGAAATAATCCTTGGGAAGACAGGAATATGAATCTTACAAT-ATTAAAAATAATTTCTTACTTTCTATTTTTAATCATTATTGAGTGTATTGTTATCTTCTTTGAACTTTTAGCCTCTTCAGAAGTAAAAAGGGAATATTTTT-ATCTGTTTCCAGATTTTATTATC s papHam1.Contig357698 2665 1002 + 4015 tgagccactgtgcctggcctatattgtttattatatatcatatg----------atatatatatt------actgatacttacaccatatatattacagatattatgt------tatataagttatatatacacattagatgaaaagttatatgtatatatacacatTATGTGAAAAGTACATTTTCATTTTACAGTGAATTCTTTCAAATTAAATCTTCAAAAACTCTAAAACTGGGCAAAGAACTTTTTTCCAGATCTACAAGTTACTTATGTACACAGGAAAAATTCCTTCACATTTCTGGTATAAGAATTTAAATTAAAAGAGGAATGAAGCAATTTTCTATCCACAATATTTGTGAGGATGTTTTATAGTACTGCTTAGAGTTTAAGTTGCTGATTACTTTTCAAATAGATAATTTCGTGGTAAGTACAACGTTTAGAAACTGTGTATGCCCTTTACCCATCAATTCCCTTATACTAAAATACCCTTAGGAAATAAAGATACATGCACTTTATTTTTCACAGCACTTATTTTAAAAAGAACCCATAGAATGGATCCTATAAATAAATTTCAGTTGCATCCATTGGATGGAATAATATGTGACCACTGAAGGTGGCAATAGATACAGAAGTACGTCGATATGCAAAGATGTATTTTGTTATAGCTAGTGAGG-AAAAAAATCAGTTAAATTATACATACACACAAATATACTATGGTCTTGTTTTAGCAAAAAATATATACAAAATATAAAATTTGTAATTTCTGAGCATTTGTATTTTAAGACA---TTTTTTCCTTTTTCTTATCTGTGATTGCTGCAATGATCATGTAGAAAATTTCTAGTAAAAGTTTATTATTAATGGAATAATCCTTGGGAAGAGAGGAATATGAACCTTGCACTGAAAAAAAATAATTTCTTAGTTTCTATATTTT---ATTGTTGTGTGTATTATTATCTTCCTTGAATTTTTAGCCTCTTCAGAAGTAAAAAGGGAATGTTTTTAATCTGTTTCCAGATTTTGTTATC i papHam1.Contig357698 C 0 C 0 s ponAbe2.chrUn 11827866 965 + 72422247 tgagccaccgcgcccggccTATGTTGTTTATtatatatcataag------atatatatatatatt------actgatatgtatac---atatataacagatataatat-------------gttatatatacacatTAGA-------------------------------TGAAAAGTACATCTTCATTTTACAGGGAATTCTTTCAAATCAAATCATCAAACACTCTAAAAGTGGGCAAAGTACCTTTTTCCAGATCTACAAGTTACTTATATACATAGGAAAAAATCCTTCGCATTTCTGGTATAAGAATTTAAATTAAAAGAGGAATGAAACAGTTTTCTATCCACAATATTTGTGAGGATGTTTtatactgctgcttaaagtttaagttgctgattacttttcaaatagaaaattttgtggtaagtactacatttaaaaaatgtgtatgccctttacccaccaattccattatactaaaatacccttaggaaataaagatatgtgcacTTTATTTTTCACAGCACTTACTTTAAAAAGAACCCATAGAATGGATCCTATAAATAAATTTCAGTTGCATCCATAGGATGGAATAATATGTGACCACTGAAGGTGGCAATAGATACAGAAGTACGTTGATGTGCAAAGATGTATTTTGTTATAGCTAGCGAGGAAAAAAAATTAGTTAAATTACACAT--ACACAAACATACTATGGTCTTGTTTTAGC-AAAAATATGTACAAAGTATAAAATTTGTAATTTCTGAGCATTTGTATTTTAAGTAAAGTTTTTTTCCTTTTTCTTATCTGTGATTGCTGCAGTGAGCATGTA-AAAACTTCTAGA-AAAGTTTATTATTAATGGAATAATCCTTGGGAAGAGAGGAATATGAATCTTGCACT-GATAAAAATAATTTCTCACTTTCTATTTTTTATCATTATTGTGTGTATTGTTTTCTTCTTTGAGCTTTTAGCCTCTTCAGAAGTAAAAAGGGAATGTTTTT-ATCTGTTTCCAGATTTTATTATC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3261552 982 + 6711082 tgagccaccgcgccctgccTATGTTGTTTATtatatatcataagttatatatatatatatatatt------actgatacgtatac---atatatgccagatataatatgtcatatatatcagttacatatacacatTAGA-------------------------------TGAAAAGTACATTTTCATTTGACAGGGAATTCTTTCAAATCAAATCATCAAACACTCTAAAATTGGGCAAAGTACACTTTTCCAGATCTGCAAGTTACTTGTGTACATAGGAAAAAGTCCTTTGCATTTCTGGTATAAGAATTTAAATTAAAAGAGGAATGAAACAGTTTTCTATCCACAATATTTGTGAGGATGTTTtatactcctgcttaaagtttaatttgctgattacttttcaaatagataatttggtggtaagtactacaattaaaaaatatgtatgccctttacccatcaattccattatactaaaacacccttaggaaataaagatacatgcacTTTATTTTTCACCTCACTTATTTTAAAAAGAACCCAAAGAATGGATCCTATAAATAAACTTCAGTTGCATCCACAGGATGGAAAAATATGTGACCATTGAAGGTGGCAATAGATACAGAAGTATATTGATGTGCGAAGATGTATTTTGTTATAGCTAGTGAG--AAAAAAATCAATTAAGTTATACAT----ACAAATATACTATGGTATTGTTTTATCAAAAAATATGTACAAAATATAAAATTTGTAATTTCTGAGCATTTGTATTTTAAGTAAAGTTCTTTTCCTTTTTCTTATCTGTGATTGCTGCAGTGAGCATGTACAAAACTTCTAGT-AAAGTTTATTAATAAAGGAATAATCCTTGGGAAGACAGGAATATGAATCTTACAAT-ATTAAGAATAATTTCTCACTTTCTATTTTTTATCATTATTGAGTGTATTGTTATCTTCTTTGAACTTTTAGCCTCTTCAGAAGTAAAAAGGGAATATTTTT-ATCTGTTTCCAGATTTTATTATC i panTro2.chr4_random C 0 I 6195 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=159542.000000 s hg19.chr4_gl000194_random 75335 343 + 191469 TATATATTTTATTATGTACATATGTTTTTCTTATGTATTCATTCAATTTATGCAAACAATGATAGATTAATCATTTCattttaattgtattctt---aaataaaa--ataacatataaat-attaCTATTGCAAAAATATTGCTTTATAGGCG-TTTATTTAAAAATATTGAACTCCCCAACTGTATTTTTCCATTCTTTCATtccatttattcatcaaacataacctgagtacctgttatgtagcagacatattctGCTATCTCTCAGGTCCCTTCTATCCTTAAAAACTTCATGTTTACCTGCCCTGCCTGCACAAGCTGAGAGATTTAAAATAGGAATATTGGGACT s papHam1.Contig357698 3667 348 + 4015 TATATATTTTATTACATAC--ATGTTTTTCTTATATACTCATTCCATTTATGGAAACAATGATAGATCAATCATTTCATCTTAATTGTATTCTTTAAAAATAAACATAACACATATAAACAATTACTATTGCAAAAATATTGCTTTATAGGAGTTTTTTTTAAAAGTATTGAACTCCAAAACTGTATTTATCCATTCTTTCTTTCCATTTATTCATCAAACATAACCTAAGTACCTGTTATGTAGCAGACATGTTCTACTATCTTTCAGGACCCTTCTATCCTTAAAAACTTCATGTTTACCTGCACTACCTGCCCAAGCTGAGAGAATTAAAGTAGCAATATTGGGACT i papHam1.Contig357698 C 0 N 0 s ponAbe2.chrUn 11828831 346 + 72422247 TATATATTTTATTATGTAC--ATGTTTTTCTTATATACGCATTCCATTTATGCAAACAATGTTAGATTAATCATTTCATTTTAATTGTATTCTTTAAAAATAAAA-TAACACATATAAATAATTACTATTGCAAAAATATTGCTTTATAGGAG-TTCATTTAAAAATATTCAACTCCCCAACTGTATTTATCTATTCTTTCATTCCATTTATGCATCAAGCATAACCTGAGTACCTGCTATGTAGCAGACATACTCTACCATCTCTCAGGACCCTTCCATCCTTAGAAACTTCATGTTTACCTGCCCCGCCTGCACAAGCTGAGAGATTTAAAATAGGACTATTGGGACT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3268729 343 + 6711082 tatatattttattatGTACATATGTTTTTCTTATGTATTCATTCAATTTATGCAAACAATGATAGATTAATCATTTCattttaattgtattctt---aaataaaa--ataacatataaat-attaCTATTGCAAAAATATTGCTTTATAGGAG-TTTATTTAAAAATATTGAACTCCCCAACTGTATTTATCCATTCTTTCATtccatttattcatcaaacataacctgagtgcctgttatgtagcagacatattctgctaTCTCTCAGGACCCTTCTATCCTTAAAAACTTCATGTTTACCTGCCCTGCCTGCACAAGCTGAGAGATTTAAAATAGGAATATTGGGACT i panTro2.chr4_random I 6195 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=62569.000000 s hg19.chr4_gl000194_random 75678 249 + 191469 TAATCTCCTTGAAACTTTGTCACCCAACTTTCAAACAAAAGCATTTCTGAAGTTAGAAAATAGTAGAAGATAAGCTTTAACTGCCCACTCAAAAGTTTATCAGTCTTAAATACTAATATTAATCATGGGAATGTCTTATTTGCATATATTCTGTAAGCATAAATATTGAATAAAATGAGCCATATGTATTCATTTGAATCATGAGTTTCCTTTGTCTTCAATTTGTTTGAAAATCAAGGAATTAATTTG s ponAbe2.chrUn 11829177 249 + 72422247 TAATCTCCTTGAAACTTTATCTCCCACCTTTCAAACAAAAGCATTTCTCAAGTTAGGAAATAGTAGAAGATAACCTTTAACTGCCCTTTCAAAAGTTTATCAGTCTTAAATACTAATATTAATCATTGGAAAGTCTTATTTGCATATATTCTGTAAGTATAAATATTGAATACAATGAGCCATATGTATTCATTTGAATCATGAGTTTCCTTTGGCTTGAAGTTGTTTGAAAATCAAAGAATTAATTTG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 3269072 248 + 6711082 TAATCTCCTTGAAACTTTGTCACCCAACTTTCAAACAAAAGCATTTCTGAAGTTAGAAAAT-GTAGAAGATAAGCTTTAACTGCCCACTCAAAAGTTTATCAGTCTTAAATACTAATATTAATCATGGAAATGTCTTATTTGCATATATTCTGTAAGCATAAATATTGAATAAAATGAGCCATATGTATTCATTTGAATCATGAGTTTCCTTTGTCTTCAATTTGTTTGAAAATCAAGGAATTAATTTG i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=18133.000000 s hg19.chr4_gl000194_random 75927 54 + 191469 TTTGAAAAATGCATTATTATTATTTCAGTGTTCTATCCCCATAGTACCTTTAAG s panTro2.chr4_random 3269320 51 + 6711082 TTTGAAAAATGCATTATTATT---TCAGTGTTCTATCCCCATAGTACCTTTAAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 11829426 54 + 72422247 TTTAAAAAATGCGTTATTGTTATTTAAGTGTTCTTTCCCCATAGTACCTTTAAG i ponAbe2.chrUn C 0 N 0 s tarSyr1.scaffold_12403 26672 50 - 29274 tttaaaGAATTTGTTGTTGCTATTTTAGCCTTCTTTCCCCATAGTGCTTT---- i tarSyr1.scaffold_12403 N 0 N 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=22871.000000 s hg19.chr4_gl000194_random 75981 242 + 191469 CAGGCGGACAAGCCAGCAACCTCACCCACTCAAGGAAACCCAGATGGCCAGGTTCCAATAGCATGAGTAGCTGCCACCTGATGGCTGATGGAGCAGAGTCCTGAGGAAAAGCAGATGGCACTGGGGCCCTAACTCTAGGGCAGAAGAACTGATGTACTGTGACTGGCAGCATGTGAGGTTGGTGATTGGCCCACCTGTTCCTGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCA s panTro2.chr4_random 3269371 242 + 6711082 CAGGCAGACAAGCCAGCAACCTCACCCACTCAAGGAAGCCCAGATGGCCAGGTTCCAACAGCATGAGTAGCTGCCACCTGATGGCTGATGGAGCAGAGTCCTGAGGAAAAGCAGATGGCACTGGGGCCCTAACTCTAGGGCAGAAGAACTGATGTACTGTGACTGGCAGCATGTGAGGTTGGTGATTGGCCCACCTGTTCCTGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCA i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=4855.000000 s hg19.chr4_gl000194_random 76223 31 + 191469 GCTTGGCCTTGCCTGGCATGCACAAGCCTTG s panTro2.chr4_random 3269613 31 + 6711082 GCTTGGGCTTGCCTGGCATGCACAAGCCTCG i panTro2.chr4_random C 0 C 0 s calJac1.Contig11589 9622 31 + 47828 TCTCGGTTTTGGCTGGCATTCACTGACCTGA i calJac1.Contig11589 N 0 I 39 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=3477.000000 s hg19.chr4_gl000194_random 76254 39 + 191469 GTGCAACAACCGTGCTACAAATGGAGCCATATATAGGAA s panTro2.chr4_random 3269644 39 + 6711082 GTGCAACAACGGTGCTACAAATGGAGCCATATATAGGAA i panTro2.chr4_random C 0 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I e calJac1.Contig11589 9653 39 + 47828 I a score=9969.000000 s hg19.chr4_gl000194_random 76293 41 + 191469 AGGAGTAGGAGGCTCAGGAGCAGGGTGTGCACTGCCTTTGG s panTro2.chr4_random 3269683 41 + 6711082 AGGAGCAGGAGGCTCAGGAGCAGGGTGTGCACTGCCTTTGG i panTro2.chr4_random C 0 C 0 s calJac1.Contig11589 9692 41 + 47828 ATGAGCAGCAGGCTCAGAAGCAGGATATGCACTGCCTTTGG i calJac1.Contig11589 I 39 C 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=2762.000000 s hg19.chr4_gl000194_random 76334 51 + 191469 GGCTCCAGTGCATGCCTC----AGGGCTCCTATGGCACTGCAGGCTTCTT--TGTTG s calJac1.Contig11589 9733 46 + 47828 GGCACCAGTCAATGCATA----AGGGCTCTTACAGCACTGTGGGCTTCTT------- i calJac1.Contig11589 C 0 N 0 s panTro2.chr4_random 3269724 51 + 6711082 GGCTCCAGTGCATGCCTC----AGGGCTCCTATGGCACTGCAGACTTCTT--TGTTG i panTro2.chr4_random C 0 C 0 s fr2.chrUn 85522709 54 - 400509343 GGCTCTAC-GCCCGCCTCGTGGAGCGCTTCCCGGTCATCTCGGTGCCCCACCTGC-- i fr2.chrUn N 0 C 0 s oryLat2.chr12 11862678 33 - 30041894 ----------------------AGCGCTTCCCTGTCATCTCTGTCCCCCACCTCC-- i oryLat2.chr12 N 0 C 0 s speTri1.scaffold_114329 45563 42 - 52741 ---------GCCTGGCTG----AGAAGTTCCTTGTCATCTCTGTCCCCCATCTGC-- i speTri1.scaffold_114329 N 0 N 0 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=29845.000000 s hg19.chr4_gl000194_random 76385 60 + 191469 CCAAGAGGCAGACCACAGGACGTCTTGAGGAAGACTTTATGTACAAGTGCAGAAAGCAGC s panTro2.chr4_random 3269775 60 + 6711082 CCAAGAGGCAGACCACAGGCCATCTTGAGGAAGACTTTATGTACAAGTGCAGAAAGCAGC i panTro2.chr4_random C 0 C 0 s fr2.chrUn 85522763 56 - 400509343 CCGAAAAACAGGCCACCGGCCGCTTTGAGGAAGACTTCATCGCCAAGCGGAGGAAG---- i fr2.chrUn C 0 N 0 s oryLat2.chr12 11862711 60 - 30041894 CGGAGAAGCAGGCCACTGGTCGCTTTGAGGAAGATTTCCTCTCCAAAAGGAGGAAGGGGC i oryLat2.chr12 C 0 I 5507 s danRer6.chr5 35175888 60 - 74451498 CTGAAAAGCAAGCCACGGGTCGCTTTGAAGAAGACTTCATTTCTAAAAGGAGAAGAGGGC i danRer6.chr5 N 0 I 3 e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=33658.000000 s hg19.chr4_gl000194_random 76445 386 + 191469 CAGGATTACCACCCAGGGGACTCGGCCTTCTGTGGCCCTGGCCTGACAGAATTTGGCCCAAGGCAGGACAAGGTCACTCAGAGCAGTGTGTCAGTAGGTGGGGCCTGTGCATGCGAGGCAAGGCCAAGCTGGCTCAAAGAGCAAGCAGCCACCTCTGCAAGGGTGTGCCTGGAGCAGGTGGAACAGCCACCAACCTCACCCACTGAAAGAAGCCAGGATGGCCAGGTTTCCACAGCCTGAGTGGCTGCCTCCTGATGGCTGATGGAGCAGAGGCCTGAGGAAAAGcaggtggcatatttaactctttaatccatcttaagttaatttttatataaagCAGATGGCACCAGTCCATGCCTCAGGGCTCATATGGCACTGTGGGCCAC s panTro2.chr4_random 3269835 386 + 6711082 CAGGATTACCACCCAGGGGACTCGGCCTTCTGTGGCCCTGGCCTGACAGAATTTAGCCCAAGGCAGGACAAGGTCACTCAGAGCAGTGTGTCAGTAGGTGGGGCCTGTGCATGCGAGGCAAGGCCAANCTGGCTCAAAAAGCAAGCANCCACCTCTGCAAGGGTGTGCCTGCAGCAGGAGGACCAGCCACCAACCTCACCCACAAAAGGAAGCCAGGATGGCCAGGTTTCCACAGCCTGAGTGGCTGCCTCCTGATGGCTGATGGAGCAGAACCCTGAGGAAAAGCaggtggcatatttaactctttaatccatcttaagccaatctttgtataACGCACATGGCACCACTCCATGCCTCAGGGCTCATATGGCACCGTGGGCCAC i panTro2.chr4_random C 0 I 5984 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=0.000000 s hg19.chr4_gl000194_random 76831 311 + 191469 AGAAGGGTGAGTCCCCAGGGTGGTAATCCTGCCTGCTTTCTGCACTTGAACATAAAGTCCTCCTCAAGATGGCCTGTGGTCTGCCTCTTGGCCCCACCTTTAGGGTAGAAGAACTGATGTACCACGTCTGGCAGTGAGTGAGGTTGGCAGCTGGTCCATCTGCTCCTGGCACACCCCTGCAGAGGTGGCTGCTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAAGCCTCGCTGCAACAAGTGTGCTACAAATGGAGCCATATAGAGGAAATGATCAGCAGGCTCAGGAACGGGGCGTGCACTG e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e gasAcu1.chrXIV 5959914 4059 - 15246461 I e panTro2.chr4_random 3270221 5984 + 6711082 I a score=2674.000000 s hg19.chr4_gl000194_random 77142 36 + 191469 CCTTTGTGGCTCCAGTCCATGCCTCAGGGCTCGTAT s panTro2.chr4_random 3276205 36 + 6711082 CCTTTGGGGCTCCAGTCGATGCCTCAGGGCTCCTAT i panTro2.chr4_random I 5984 C 0 s tetNig2.chr4 8957174 18 - 9874776 ---------------TCTACGCCC---GGCTCGTGG i tetNig2.chr4 N 0 C 0 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=-3872.000000 s hg19.chr4_gl000194_random 77178 27 + 191469 GGCACTG--TAGGTTTCTTGGTCG-CCAAC s panTro2.chr4_random 3276241 27 + 6711082 GGCACTG--CGGGTTTCTTGGTTG-CCTAG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_700 506889 28 - 528937 GGTGGTG--TCGGTGCCGCGCATCCCGGAG i xenTro2.scaffold_700 N 0 C 0 s tarSyr1.scaffold_467813 103 5 + 1163 -------------------------CTGAG i tarSyr1.scaffold_467813 N 0 C 0 s tetNig2.chr4 8957192 29 - 9874776 AGCGCTTCCCGGTCATCTCGGTGC-CCCAC i tetNig2.chr4 C 0 I 9 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e gasAcu1.chrXIV 5959914 4059 - 15246461 I a score=53598.000000 s hg19.chr4_gl000194_random 77205 58 + 191469 AGACAGACCACAGGCTTTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAA s panTro2.chr4_random 3276268 58 + 6711082 CTGCAAACCACAGGCTGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGTAGTCAG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_700 506917 55 - 528937 AAACAGGCCACCGGGCGCTTCGAGGAGGATTTCATCTCCAAGCGGAAGAAGGGGC--- i xenTro2.scaffold_700 C 0 I 5 s tarSyr1.scaffold_467813 108 51 + 1163 AAACGGGCCATGGACCACTTGATGAAGGATTTCATCTCCAAGTGCAGGAAG------- i tarSyr1.scaffold_467813 C 0 N 0 s tetNig2.chr4 8957230 51 - 9874776 AAACAGGCCACGGGACGATTCGAGGAGGACTTCATCGCCAAGCGGAGGAAG------- i tetNig2.chr4 I 9 I 2303 s fr2.chrUn 113733559 50 + 400509343 AAGCAGGCCACGGGGCGCTTCGAGGAGGACTTCATCTCCAAGCGGAGGAA-------- i fr2.chrUn N 0 I 8 s gasAcu1.chrXIV 5963973 58 - 15246461 AAGCAGGCCACGGGCCGCTTCGAGGAGGACTTCATCTCCAAGCGGAGGAAGGGGCTGA i gasAcu1.chrXIV I 4059 N 0 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I a score=32896.000000 s hg19.chr4_gl000194_random 77263 439 + 191469 GATTAGCACCCAGGGGACTGGGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGACCCAAGGCAGGACAAGCTGACTCGGAGCAGAGTGTCAGTACCTGGGGCCTATGCATGCCAGACAAGGCCAAGCTGGCTCAGAGCAACTAGCCACATCTGCAAGGCTGCACCTGTAGCAGGCAGACAAGCCAGCAACCTCAGCTACTCAAGGAAGGAGGGATGGCCAGGTTCCCACAGCCTGAGTGGTTGCCGCCTGATGACTGATAGAGCAGAGGCCTGAGGAAAAGCATATGGCACTGGGGCCCTACCTCTAGGGTAGAAGAACTGATGTAAGCTGACCGGCAGCAAGTGAGGTTGGTGGCCAGTCCACCAGCTCCTGGCACAACCTTGCAGAGGTGGCCAGTTGCTTTTTGAGCCAGCTTGGCCTTGCCCTTCATGCACAAG s panTro2.chr4_random 3276326 439 + 6711082 GATTACCATCCAGGGGACTCTGCCTTCTGCGGTCCTCTCCAGACTTAGAATTTGGCCCAAGGCAGGACAAGCTGACTCGGAGCAGAGTGTCAGTACCTGGGGCCTATGCATGCCAGGCAAGGCCAAACTGGCTCAGAGCAACCAGCCACCTCTGCAAGGCTGTGCCTGTAGCAGGCGGACAAGCCAGCAACCTCACCTACTCAAGGAAGCCCCGATGGCCAGGTTCCAACAGCATGAGTAGCTGCCACCTGATGGCTGATGGAGCAGAGTCCTGAGGAAAAGCAGATGGCACTGGGGCCCTAATTCTAGGGCAGAAGAACTGATGTACCGTTACTGGTAGCATGTGAGGTTGGTGATTGGCCTACCTGTTCCTGGCACACCCTTGCAGAGGTGACTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAAG i panTro2.chr4_random C 0 I 791 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e xenTro2.scaffold_700 506972 5 - 528937 I e tetNig2.chr4 8957281 2303 - 9874776 I e fr2.chrUn 113733609 8 + 400509343 I a score=0.000000 s hg19.chr4_gl000194_random 77702 26 + 191469 TCTGTGCAACAACTGTGACACAAATG e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e xenTro2.scaffold_700 506972 5 - 528937 I e tetNig2.chr4 8957281 2303 - 9874776 I e fr2.chrUn 113733609 8 + 400509343 I e panTro2.chr4_random 3276765 791 + 6711082 I a score=14473.000000 s hg19.chr4_gl000194_random 77728 167 + 191469 GAGCCACACAGAGAAAATGAGCAGCAAGCTCAGGAGCAGGGTGTGTGCTTCCTCAGGGGCTCCAGTCCATGCCTAAGTGTTCATATGGCACTGTGGGCTTCTTGGTTGCAAAGAGGTAGACCACAGGCCATCTTCAGGAGGTCTTTATGTGGAAGTGAAGAAAGCAG s panTro2.chr4_random 3277556 167 + 6711082 GAGCCACACAGAGAAAATGAGCAGCAGGTTCAGGAGCAGGGTGTGCGCTTCCTCGGGGGCTCCAGTCCATGCCTGAGGGTTCATATGGCACTGCGGGCTTCTTGGTTGCAAAGAGGTAGACCACACGCCATCTTCAGGAGGTCTTTATGTGGAAGTGCAGAAAACAG i panTro2.chr4_random I 791 C 0 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e xenTro2.scaffold_700 506972 5 - 528937 I e tetNig2.chr4 8957281 2303 - 9874776 I e fr2.chrUn 113733609 8 + 400509343 I a score=13501.000000 s hg19.chr4_gl000194_random 77895 80 + 191469 CCAGGATTACCACCC--GTGGGACTCGGCCTTTTTTGGCCCTGGCCTGAA--AGAATTTGGCCCAAGGCAGGACAAGCTCACTC s tarSyr1.scaffold_512098 554 84 + 1053 CCAGGATGACCATACAGGGGGGACCAAGCCACCCGTGGCCCTGACCAGAATTAAAATTTGGCCCAAGGCAGGGTGAGTACCCTT i tarSyr1.scaffold_512098 N 0 C 0 s panTro2.chr4_random 3277723 80 + 6711082 CCAGGATTACTACCC--GTGGGACTCGGCCTTTTGTGGCCCTGGCCTGAC--AGAATTTGGCCCAAGGCAGGACAAGCTCACTC i panTro2.chr4_random C 0 C 0 e danRer6.chr5 35175948 3 - 74451498 I e oryLat2.chr12 11862771 5507 - 30041894 I e xenTro2.scaffold_700 506972 5 - 528937 I e tetNig2.chr4 8957281 2303 - 9874776 I e fr2.chrUn 113733609 8 + 400509343 I a score=8780.000000 s hg19.chr4_gl000194_random 77975 53 + 191469 GGAGCAACATGTCGGAACCTGGGGCCTGTGCATGCCAGGCAAGGCCAAGCT-------------GG--- s panTro2.chr4_random 3277803 53 + 6711082 AGAGCAACATGTCGGTACCTGGGGCCTGTGCATGCCAGGCAAGGCCAAGCT-------------GG--- i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_512098 638 66 + 1053 GGAACAGTGTGTGGGTACCTGGGACCTGCTCATGCCTGGAAGGGCCAAGCCAGTGACGTTACCAGG--- i tarSyr1.scaffold_512098 C 0 C 0 s oryLat2.chr9 28432292 58 - 33213694 GGAGAAGTTTCCCGTCATCTCAGTGCCGCACATCCCAGAGAAG--CAGGCC---------ACGGGGCGC i oryLat2.chr9 n 5507 I 17 e danRer6.chr5 35175948 3 - 74451498 I e xenTro2.scaffold_700 506972 5 - 528937 I e tetNig2.chr4 8957281 2303 - 9874776 I e fr2.chrUn 113733609 8 + 400509343 I a score=-7038.000000 s hg19.chr4_gl000194_random 78028 27 + 191469 CTTAAAGAGCACCCAGAGCATC-CATTC s tetNig2.chr12 6873213 25 - 12622881 CTCCAAGAGGAGGAAAGGCCTCATT--- i tetNig2.chr12 n 2303 C 0 s gasAcu1.chrXIII 2061745 25 + 20083130 CTCCAAGCGCAAGAAGGGCCTCACG--- i gasAcu1.chrXIII N 0 C 0 s oryLat2.chr9 28432367 25 - 33213694 CTCCAAAAGGAGAAAGGGCCTCATA--- i oryLat2.chr9 I 17 C 0 s tarSyr1.scaffold_512098 704 16 + 1053 CTTGAAGAGCAACCAG------------ i tarSyr1.scaffold_512098 C 0 N 0 s panTro2.chr4_random 3277856 27 + 6711082 CTCAAAGAGCACCCAGAGCATC-CATTC i panTro2.chr4_random C 0 C 0 s petMar1.Contig57579 117 21 - 5424 ----AAGCGCAGGCGGGGCCTCATC--- i petMar1.Contig57579 N 0 C 0 s fr2.chrUn 113733617 2 + 400509343 -----------------------TA--- i fr2.chrUn I 8 C 0 s danRer6.chr5 35175951 2 - 74451498 -----------------------TA--- i danRer6.chr5 I 3 C 0 e xenTro2.scaffold_700 506972 5 - 528937 I a score=850483.000000 s hg19.chr4_gl000194_random 78055 526 + 191469 TGGTGGATAAGCCAACCACATGGCCAGCTTCTGGGTGTGGACACAGTGCCACATCTTCCATCACTTTCTGACGTATCCCACCAACACTGAAGAGACAGCCTGGAGAGAGTGCAAGAGGAAGGCTGAGAAGGATCAGATAGTGGGTGCTGGCTTCTTTCTGACCCTCAGCACACCCCCAGG-----TGGTGACCATCAACCTTTAGGGGTGGGAGAGCAAGACTGATGGCTTCAAATGCTTCCCCAAGAAGATGGACAC--AGGCCACTCAGCTCATCCTCACTGCCAATGAGTTGACAAGCAAGCAGATGACAGTGACAGGCTTTCAGAAAGAGCATCAGAAGGT-GGCCAGTTTTTCTTCAGCCTCAGCCAGGCCTTAGAA---------------------------CTTGACTAGGCCATCCACTTCACCAGAGATGCCTTCAAGAACATCAGTAAGCTCTTTGCCAATGAGTCCAGGAAGGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATTCTGGACATCATCTTCATACA s panTro2.chr4_random 3277883 525 + 6711082 TGGTGGAGGAGCCAACCACATGGCCAGCT-CTGGGTGTGGGCATGGTGCCACATCTTCCATCACTTTCTGATGTATCTCACCAGCACTGAAGAGACAGCCTGGAGAGAGTGCAAGAGGAAGGCTGAGAAGGATGAGATAGTGAGTGCTGGCTTCTTTCTGACCCTCAGCACACCCTCATG-----TGGTGACCATCAACCTTTAGGGGTGGGAAAGCAAGACTGATGGCTTCAAATGCTTCCCCAAGAAGATGGACAC--AGGCCACTCAGCTCAACCTCACAGCCAATGAGTTGACAAGCAAGCAGATGACAGTGACAGGCTTTTAGAAAGAGCATCAGAAGGT-GGCCAGTTTTTCTTCAGCCTCAGCCAGGCCTTGGAA---------------------------CTTGACTAGGCCATCCACTTCACCAGAGATGCCTTCAAGAACATCAGTGAGCTCTTTGCCAATCAGTCCAGGAAGGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCTCATACA i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_700 506977 539 - 528937 TGGTGGATG----GAGCACATGTGCAGCCACCCGGTCCTGGCGCGGTGCGACGCCTTCCAGCACTTCCT---------CAGCTGCACCGACGAGAAGGCCTGGAAACAGGGCAAGAGAAAGTGCGAGAGGGACGAGATGGTGGGGGCCAACTTCTTCCTCACCCTCAGCCTCCCCCCCGGCTCCCCGGTG--CTGGAGCCGCACGATGTGGACGGG-AGGTTGGACGGCTTCAAAGTCTTCACCAAACGGATGGACGAGGGGGTCCTGCAGCTCAGCCAGACTGCCGGGGAGTTTGCCCGCAAACAG------GCGGCCGGGTTCAAGAAGGAGTACCAGAAGGTGGGCCAGGCAGTCAGGGGGCTGGGGCAGGCCTTTGAGATGGACCACATGGTCTTTTCGGCTGGCCTCAACCGGGCAATGGCCTTTACCGGAGAAGCCTACGAGGCTATCGGGGAGATGTTCGCTGAGCAGCCCCGCCAGGACTTGGACCCCATTATGGACTTGTTGGCCGTCTATCAGGGCCACCTGGCCAACTTCCCCGACATCATCCATGTTCA i xenTro2.scaffold_700 I 5 I 17480 s oryLat2.chr9 28432392 539 - 33213694 TGGTGGATG----AACCACATGACCAGCCACCCCGTCCTGGCCCGGTGTGACGTTTTTCAGCACTTCCTTACCTG---CAACAGCGCCGACGAGAAGGCCTGGAAGCAAggcaagaggaaggcagagaagGACGACATGGTGGGGGCCAACTTCTTTCTCACCATCAGCCCCCCAG---------CGGTTCCTCTGGACTTCCAGGAGGTCGAGAGCAAAGTGGACGGCTTCAAGACCTTCTCCAAAAGAATGGACGACAGCGCCCTGCAGCTACACGCCACGGTCAGCGAGTTCGCTCGCAAGCAG------ATCAGCGGCTTCAGGAAGGAGTATCAGAAAGTGGGGATGTCCTTCAAGTTCCTGAGCCAAGCCTTCGAGATGGACCAGCAGGCGTATTCCTCAGGACTCAACCACGCCATCTCCTTCACCGGAGACACATATGAAGCAATCGGAGAGTATTTTTCAGAGCAGCCCAGCAAGGATCTCGACCCAATCATGGATTTGTTGGCTCTTTACCAGGGACACATGGCAAACTACCCAGACATCATCCATGTTCA i oryLat2.chr9 C 0 I 10 s gasAcu1.chrXIII 2061770 539 + 20083130 TGGTGGATG----AACCACATGACGAGCCACCCGGTGCTGGCCCGGTGCGACGTCTTCCAGCACTTCCTCCGCTG---CAACAGCGCCGACGAGAAGGCCTGGAAGCAGGGCAAGAGGAAGGCGGAGAAGGACGAGATGGTCGGAGCCAACTTCTTCCTCACCATCAGCACCCCGG---------CGGCGCCGCTCGACTTCCAGGAGGTGGAGAGCAAGATCGACGGGTTCAAGAGCTTCACCAAGCGGATGGACGACTCGGCGCTGCAGCTCAGCGCCACCGCCAACGAGTTCGCCCGCAAGCAG------ATCGCCGGCTTCAGGAAGGAGTACCAGAAAGTGGGGCTCTCCTTCAAGGTGCTCGGCCAAGCCTTCGAGATGGACCAGCAGGCGTACTCCGCCGGACTCAACCAGGCCATCTCCTTCACCGGAGACGCGTACGAGGCCGTCGGGGAGTACTTCGCCGAGCAGCCCGGCAAGGACCTGGACCCCATCATGGACCTGTTAGCGCTCTATCAAGGACACCTGGCCAACTACCCGGACATCATCCACGTGCA i gasAcu1.chrXIII C 0 I 7332 s tetNig2.chr12 6873238 539 - 12622881 TGGTGGATG----AACCACATGACCAGCCACCCCGTCCTGGCCAGGTGTGATGTTTTCCAGCacttcctcacctg---cagcagcacggaCGAGAAGGCCTGGAAGCAGGGGAAGAGGAAGGCCGAGAAGGACGAAATGGTGGGAGCCAACTTCTTCCTCACCATCAGCacgccgc---------cggcgccgctcgACTTCCAGGAGGTCGAGAGCAAAGTGGACGGCTTCAAGGCCTTCACCAAAAGGATGGACGACAGCACCCTGCAGCTCAACGCCACCGCCAGCGAGTTCGCCCGCAAGCAG------ATGAGCGGCTTCAAGAAGGAGTACCAGAAAATGGGGCTGTCCTTCAAGGTCCTCGGCCAGGCCTTCGAGATGGACCAGCAGCCGTACTCTGCCAGGCTCAACCAGGCTCTCTCCTTCACCGCCGAGGCCTACGACGCCATCGGGGATTATTTTGCAGAGCAGCCCAGGAAGGACCTGGACCCCATCATGGACCTGTTGGGCCTGTACCAGGGACACCTCGCCAACTTCCCAGACATCATCCACGTCCA i tetNig2.chr12 C 0 I 3608 s danRer6.chr5 35175953 539 - 74451498 TGGTGGATG----AATCATATGACCAGCCACCCTGTGCTGGCCCGGTGTGATGTTTTCCAGCACTTCCTCTCGTG---CTCCAGCACAGATGAAAAGGCTTGGAAGCAGGGGAAGAGGAAAGCAGAGAAGGATGAGATGGTCGGTGCCAATTTCTTCCTCACCATCAGCACTCCAC---------CAGCTCCTCTCGACCTGCAGGACGTTGAAAGCAGGATTGACGGATTCAAGGTCTTCTCCAAGAAAATGGACGACAGCGTGATCCAAGTCAATGCCACACTCAGTGAGTTTGCGAGGAAGCAG------ATAGCTGGCTTCAAGAAAGAGTATCAGAAAGTGGGACAGTCTTTTAAGTATCTGAGTCAAGCATTCGAGATGGACCAGCAGTCATACTCCATTGGTTTGAACCAAGCGATTGCATACACAGGAGAAGCCTATGAAGTTATCGGAGACTACTTTGTGGAGCAGCCTAAACAAGATGTGGACCCAGTGATGGATTTGCTAGCCCTGTACCAAGGACACCTCACCAACTACCCTGATATCATCCATGTCCA i danRer6.chr5 C 0 I 16980 s fr2.chrUn 113733619 539 + 400509343 TGGTGGATG----AACCACATGACCAGCCACCCCGTCCTGGCCAGGTGCGATGTTTTCCAGCActtcctcacctg---cagcagcacggacGAAAAGGCCTGGAAGCAGGGGAAGAGGAAGGCGGAGAAGGACGAGATGGTCGGGGCCAACTTCTTCCTCACCATCAGCACCCCGC---------CGGCTCCCCTCGACTTCCAGGAGGTGGAGAGCAAAGTGGACGGCTTCAAGACCTTCACCAAGAGGATGGACGACAGCGCCTTGCAGCTCAGCGCCACCGCCAGCGAGTTTGCCCGCAAGCAG------ATGAGCGGCTTTAAGAAGGAATACCAGAAAATGGGGCTGTCCTTCAAGGTCCTCAGCCAGGCCTTTGAAATGGACCAGCAGCCGTACTCCGCTGGGCTGAACCAGGCTATCTCCTTCACCGCCGACACCTACGACGCCATCGGGGATTATTTTGCAGAGCAGCCGAGGAAGGACCTGGACCCCATCATGGATTTGTTAGGTCTCTACCAAGGACATCTAGCTAACTTCCCAGACATCATACATGTCca i fr2.chrUn C 0 C 0 s petMar1.Contig57579 138 536 - 5424 CTCTGGATG----AATCATATGACGGGCCATCCGGTGCTCGCGCAGTGCGACGCCTTCCAGCACTTTCTCACGTG---------CACCGACGAGAAAGCGTGGAAGCAGGGCAAGCGAAGGGCTGAGAAAGATGATGCCGTGGGAGCCAAGTTCTACCTGACCATTAGTGCACCGCCAA------CGTCACACCTGGACCTGCAGGACGTCGAGGCACGGACCGACTCTTTCAGAAGCTTCTCCAAAAGAATGGATGAAAGTGTGGTCCTGCTCAATGGCACGGCCGGGGAGATGGCACGCAAACAT------TGCATTGACTACAAGCGCGACTTTCAGAAGATGGGCCAGGTGTTCGAGAATCTAGGACAGTCGTTTGAGCAGGATGATCAGCACTATTCGGACAACCTCACCAAAGCAATCACCCACACAGGCAACACCTACGTGGCAATCGGGGAGCTATTTGCACAACAGCCACAGCAGGATCTCCAGCCCCTGATGGACGTGACGTGCCTCTACCAAGGACTGCTCGCCAATTTCCCAGACATCATTCACATTCA i petMar1.Contig57579 C 0 N 0 a score=22003.000000 s hg19.chr4_gl000194_random 78581 63 + 191469 CAAGGAAGCTCTTACCAAAGTCACAGAGAAC--------AGGCAA-----CATGTGGCAGAAGGGAAGACAGAGGT s panTro2.chr4_random 3278408 63 + 6711082 CAAGGAATCTCTTACCAAAGTCACGGAGAAC--------AGGCAA-----CATGTGGCAGAAGGGAAGACAGAGGT i panTro2.chr4_random C 0 C 0 s fr2.chrUn 113734158 52 + 400509343 gaaa--------------ggtaaaaaaaaacagcgctTTCGTAAATACACCACACGGCAGAAGGGA---------- i fr2.chrUn C 0 I 4178 s gasAcu1.chrXIII 2069641 63 + 20083130 CACAGGAGCGCTGACCAAGGTGAAGGAGAGC--------CAGAAG-----CACGTGGAGGAGGGAAAGATGGACCG i gasAcu1.chrXIII I 7332 I 1 s oryLat2.chr9 28432941 57 - 33213694 cataaaaacact---ctGAGTTCTGGAAACC--------TCTAAA-----ATCAGCTAAAAGGtagatgcaaa--- i oryLat2.chr9 I 10 n 10 s tetNig2.chr12 6877385 59 - 12622881 ----GGAGCCCTGACAAAGGTGAAGGAAAGC--------CAGAAG-----CACGTGGAGGAGGGCAAGATGGACCT i tetNig2.chr12 I 3608 I 1 s danRer6.chr5 35193472 63 - 74451498 CACAGGTGCTCTGACGAAGGTGAAGGAAAGC--------CAAAAG-----CACGTAGAAGAAGGGAAGATGGAGAG i danRer6.chr5 I 16980 I 1 s xenTro2.scaffold_700 524996 56 - 528937 -------GCTCTGACCAAAGTACGGGAGAGT--------AAGAAG-----CAAGTTGAAGAAGGGAAGTTGGAGCT i xenTro2.scaffold_700 I 17480 C 0 a score=170749.000000 s hg19.chr4_gl000194_random 78644 134 + 191469 GCAG-AGGCTGATGGCAT-CATTATCACAGGAACAGGATTTCTTTGGCCACTTTGGCTGAAATTCACCACTTCCATCCAATTCACTCAAGCGAGAGACTTGAAATCACAGATGGACCATTTCTTGCAACAAGAGAT s panTro2.chr4_random 3278471 134 + 6711082 GCAG-AGGCTGATGGCGT-CATTATCACAGGAACAGGATTTCTTTGGCCACTTTGGCTGAAATTCACCACTTCCATCCAATTCACTCAAGTGAGAGACTTGAAATCACAGATGGAGCATTTCTTGCAACAAGAGAT i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_700 525052 132 - 528937 GCAGAAAGCCGGTGAAATCCAGGAGCGCTGTAACGTTATCTCCTACGCCACGCTGGCAGAGATCCACCATTTCCACAAGAT----CCGAGTCAGAGACTTTAAGTCACAAATGCAACATTTCTTGCAGCAACAGAT i xenTro2.scaffold_700 C 0 N 0 s tetNig2.chr12 6877445 131 - 12622881 GCGC-AGGCGGAGGGCATCAACGACCGCTGCAACATCATCTCCTGCGCCACGCTAGCCGAGATCCAGCACTTCCACCAGAT----CCGCGTGCGCGACTTTAAGGCGCAGATGCAGCactacctgcagcagcagat i tetNig2.chr12 I 1 C 0 s fr2.chrUn 113738388 131 + 400509343 GCGC-AGGCCGACGGCATCAACGACCGCTGCAACATCATCTCCTGCGCCACGCTGGCAGAGATCCAGCACTTCCACCAGAT----CCGCGTGCGAGACTTCAAGGCGCAGATGCAGCactacctgcagcagcagat i fr2.chrUn I 4178 C 0 s gasAcu1.chrXIII 2069705 131 + 20083130 TCAC-AGGCGGAGGGCATCGACGAGCGCTGCAACATCATCTCCTGCGCCACGCTGGCTGAGATCCAGCACTTCCACCAGAT----CCGCGTGCGCGACTTCAAGGCCCAGATGCAGCACTACCTGCAGCAGCAGAT i gasAcu1.chrXIII I 1 C 0 s oryLat2.chr12 11868278 121 - 30041894 ----------GGGGGC-TCCAGGAACGCTGCAACATCATATCTTGCGCCACGATGGCAGAAATCCAGCATTTCCACCGCAC----TCGTGTCCGAGACTTCCGCTCGCAGATGCAGCATCACCTCCGCCAGCAGAT i oryLat2.chr12 I 5507 C 0 s danRer6.chr5 35193536 131 - 74451498 CAGC-ATGCAGATGGCATCAGGGACCGCTGTAACATCATCTCTTTCGCCACCATGGCTGAGATCCAGTACTTCCATCAGAC----TCGAGTGCGGGACTTTAAATCCCAGATGCAGCATTTCCTACAGCAGCAGAT i danRer6.chr5 I 1 C 0 a score=13287.000000 s hg19.chr4_gl000194_random 78778 31 + 191469 ACTA-TTTTTTCAAAAAGTCAC-CTAAAATTTG s panTro2.chr4_random 3278605 31 + 6711082 ACTA-TTTTTTCAAAAAGTCAC-CTAAAATTTG i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_8835 6571 32 - 15709 -CTGCTTCTTCCAGAAAGTGACGCTAAAACTGG i xenTro2.scaffold_8835 N 0 C 0 s tetNig2.chr12 6877576 21 - 12622881 -ctccTTCTTCCAGAGGGTCAC----------- i tetNig2.chr12 C 0 n 0 s fr2.chrUn 113738519 21 + 400509343 -caccTTCTTCACAAGAGTCAC----------- i fr2.chrUn C 0 N 0 s gasAcu1.chrXIII 2069836 27 + 20083130 -CGCCTTCTTCCAGAAGATCAC-AGGAAA---- i gasAcu1.chrXIII C 0 N 0 s oryLat2.chr12 11868399 22 - 30041894 -CAGCTTCTTCCAGAAGATAAC-C--------- i oryLat2.chr12 C 0 N 0 s danRer6.chr5 35193667 31 - 74451498 -CAGCTTCTTCCAGAAGGTCAC-AGGAAAGCTG i danRer6.chr5 C 0 N 0 a score=10957.000000 s hg19.chr4_gl000194_random 78809 158 + 191469 AT--AGTGTTGAATGA------------CTAGCTATTCTAT----TGTGGACTT-TTTCCACTTCACGGGTACTTTCTACAGCAGAATG----------------------ATAACAGTATCAAAGAG------CTAGTGCCAGCTATCGGTGG-TAGTACAAGGATGACTTTGTGCTCAACTGAAACCCAGCTGAATATAGAACT s panTro2.chr4_random 3278636 158 + 6711082 AT--AGTGTTGAATGA------------CTAGCTATTCGAT----TGTGGACTT-TTTCCAGTTCATGGGTACTTTCTACAGCAGAATG----------------------ATAACAGTATCAAAGAG------CTGGTGCCAGCTATCAGTGG-TAGTACAAGGATGACTTTGTGCTCAACTGAAACCCAGCTGAATATAGAATT i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_8835 6603 191 - 15709 AGGAAGCGCTACAGAAATACGACGCGGCCTAGAGACTCCCTCCGCTCTGAACTTATTTCCTGGTTATGGGGATTGCTGAAAGCTGGGGGGGGGGGGCAGTCACCCCTAGGAACAAAAAAAAAAAAGAGGAGAACCTATTGCCAATAATTGGCAGTTGGTACACGAATGGTCATACATTTATCT----------TTAGTATA----- i xenTro2.scaffold_8835 C 0 C 0 e tetNig2.chr12 6877597 0 - 12622881 I a score=68.000000 s hg19.chr4_gl000194_random 78967 16 + 191469 GTCTA-GGAAAG----------------TGTTA s panTro2.chr4_random 3278794 16 + 6711082 GTGTA-GGAAAG----------------TGTTA i panTro2.chr4_random C 0 C 0 s dasNov2.scaffold_58494 6473 33 - 9367 GTATATGGAAAGCTCTCATGTTTTTTAATGTTA i dasNov2.scaffold_58494 N 0 N 0 s xenTro2.scaffold_8835 6794 14 - 15709 --CTG-TGATAA----------------TGGAA i xenTro2.scaffold_8835 C 0 C 0 e tetNig2.chr12 6877597 0 - 12622881 I a score=9623.000000 s hg19.chr4_gl000194_random 78983 75 + 191469 ---------------ATATGGTGATAGAATAGAAACAG--TAACAAAT---GAACTAAATCATACTATGAATGCCTACACTACCATTATAACTTT s panTro2.chr4_random 3278810 75 + 6711082 ---------------ATATGGTGATAGAATAGAAACAG--TAGCAAAT---GAACTAAATCGTACTATGAATGCCTACACTACCATTATAACTTT i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_8835 6808 95 - 15709 AGATGGAACCATAATGTATCGTTCCATAACACATGCAACCTAGCACATTTCTATTGAAATAATACTATCTATGCCTACACTACCATTGTACCTGT i xenTro2.scaffold_8835 C 0 N 0 e tetNig2.chr12 6877597 0 - 12622881 I a score=181902.000000 s hg19.chr4_gl000194_random 79058 1982 + 191469 TTGAAGAATGATAATACCACTTACTTTATTGCTTTTTGAAGTAGGAATATTTTAGTGGATATGCTATAGACCTGAAACCCTATAAAGAATCCCAAAGAAGCTGGCTGGATAAAGCCTGCTATGGATGTCTTTATACTCAAAGACTGATGAGGCAAttcgaatatgtgtccccaccaaatctcatgttgagttatgcttcctaatgttggaggtggatcctgttataaggtgattgaatcatgaaggcaaatttctcatgagtggttcagcactatccccttggtactgtcctcacaatcatgagtgaattctcgtgagatctggccactgaaaactctatatcactccctactctccgtgatttcctcttgccatatgagacaattcactctttcattaccttgcacaatgattgaaagatttctgaggccccccagaagcagaagcactaagcttcttgtccactctgcagaaccatgagccaattaaacctcttttTCGAAATAAATCTTACCAAAAATGGCAAAtgaggactggagcattgctataaagatacctgaaaatgtggaagcaacttcggaactgggtaatgggtagaggttggaagagtttggagggctccaaagaagacagacagatgagaacatttttggaccatcttagagactggttaaatggctgtgacaaggatgctgacaaaaacaaggacagtgaaggccaggctgagggggcctcagataaaaataagaaggtttctggaaaatgtctcccttttggatatggaaagcttacacaatgcctgtaccatcattgtaccttagacgcagtgaacttgctttttatttcagagactcgtaggcaaaagagaatgtagccttgacccagatgagactttgcactttgtaactttgagttaatgctgaaatgagttaagactttgggagactgctggcaaggcatgactgtattttgaaatgtgagaaggacatgagatttgtggggtcagggacagaataatacggtttttctctatgccccttccaaagctcatgtgaaagtacactccctaatgttagagtcggggcctaggtggaaaaatctttaatcataaaggggtgggagtggatccttcacaaatggcaaagcactaagcccttaatgccatcctcctgatagtgagtgagttctcatgagatctagtagtttaaaaggctgtggaacctctttcctctctctgtcttgttccaacttttgccatatgaaacatgtcattgccgcttggatttccggcgtggttAGGAGGGGCTTGATCAGTGTGGGCCTGGTCAGTGGACCTAGGTCTGTGAGGACTATTTAGTGGGATTGTGGTCAGCAGGGGTCTGCTTAGAGAGGGTCTCATTAGTGGGGTCTAGTAGTGGGGGTTTTGGTGAGTGGGGACCTATTGGCTGCCAGTTGTTTGGTGTCTGGTCAGTGCAAACCTGGGCTGTGGGGCTTGATCAGTGGAGACCTGGTCAGCTGGGGCTTAGTGCTGGCCTGGTCAGCATGGGCTGGGGCACTGGTGACCAGGTCAAGGGGTGCTATTCAGTGGAGGACTGGGCACATGGGACCTAGTCAGCAGACCCTGGTGGGCGTGTcctcatcagtgaggcccttgtcagtggggccctggtcagggcagccttgtcagtgggacctaatctgtagtgtcctggtcagagaggacttggtcagtgGTGACTTTTGTAGCACTGGTCTACAGGGTGACCTGGTCAGCGGGGATCTCAGCATTTGGTGCCAGTTCAGTGGGGTCTACTCACTAGGGTCCCAGTCAGGGGCATCTGGTGACCTTAGGCCTGGTTATTAGGGGCCTGATCAGTGGCAACCTGTTCCCTGGaggcctggtcagtggggcctcatctttggggccagggaatgaggtcatgatcagtggaacctgatcagtgaggccttgtcaataatga s panTro2.chr4_random 3278885 1982 + 6711082 TTGAAGAATGATAATACCACTTACTTTATTGCCTTTTGAAGTAGGAATATTTTAGTGGATATGCTTTAGACCTGAAACCCTATAAAGAATCCCAAAGAAGCTGGCTGGATAAAGCCTGCTATGGATGTCTTTATACTCAAAGACTGATGAGGCAAttcaaatatgtgtccccaccaaatctcatgttgagttatgcttcctaatgttggaggtggatcctggtataaggtgattgaatcatgaaggcaaatttctcatgagtggttcagcaccatccccttggtactgtcctcacaatcatgagtgaattctcgtgagatctggccactgaaaactctatatcactccctactctccgtgatttcctcttgccatgtgagacaattcactctttcattaccttgcacaatgattgaaagatttctgaggccccccagaagcagaagcactaagcttcctgtccactatgcagaaccatgagccaattagacctcttttTCAAAATAAATCTTACCAAAAATGGCAAAtgaggactggaacattgctataaagatacctgaaaatgtggaagcaactttggaactgggtaatgggtagaagttggaagagtttggagggctccaaagaagacaaacagatgagaacatttttggaccatcttagagactggttaaatggctgtgacaagaatgctgacaaaaacatggacagtgaaggccaggctgaggaggcctcagataaaaataagaagctttctggaaaatgtctcctttttggatatggaaagcttacacaatgcctgtaccatcattgtaccttagatgcagtgaacttgccttttatttcagagactcgtaggcaaaagagaatgtagccttgacccagatgagactttggactttgtaactttgagttaatgctgaaatgagttaagactttgggagactgctggcaaggcatgactgtattttgcaatgtgagaaggacatgagatttgtggggtcagggacagaataatacggtttttctctatgccccttccaaaactcatgtgaaagtacactccctaatgttagagtcggggcctaggtggaaaaagctttaatcataaaggggtgggagtggatccttcacaaatggcaaatcaccaagcccttaatgccatcctcctgataatgagtgagttctcatgagatctagtagtttaaaaggctgtggaacctctttcctctctctatcttgttccaacttctgccatatgaaacatgtcattgctgcttggatttccggtgtggctagaaggggcctgaTCAGTGTGggcctggtcagtggacctaggtcagtgaggactatttagtgggatcgtggtcagcaggggtctgcttagagagggtctcattagtgGGGTCTAGTAGTGGGGGTTTTGGTGAGTGGGGACCTATTGGCTGCCAGTTGTTTGGTGTCTGCTCAGTGCAAACCTGGGCTGTGGGGCTTGATCAGTGGAGATCTGGTCAGCTGGGGCTCAGTGCTGGCCTGGTCAGCATGGGCTGGGGCACTGGTGACCAGGTCAAGGGGTGCTATTCAGTGGAGGACTGGGCACATGGGACCTAGTCAGCAGACCCTGGTGGGCGTGTcctcatcagtgagtcccttgtcagtggggccctggtcagggcagccttgtcagcgggacctaatctatagcgtcctggtcagagaggacttggtcagtgGTGACTTTTGTAGCACTGGTCTACAGGGTGACCTGGTCAGCGGGGATCTCAGCATTTGGTGCCGGTTCAGTGGGGTCTACTCACTAGGGTCCCAGTCAGGGGCATCTGGTGACCTTAGGCCTGGTTATTAGGGGTCTGATCAGTGGCAACCTGTTCCCTGGAGGCCTGGTCAGTGGGGCCTCATCTTTGGGGCCAGGGAATGaggtcatgatcagtggaacctgatcagtgaggccttgtcaataatga i panTro2.chr4_random C 0 I 140 e tetNig2.chr12 6877597 0 - 12622881 I a score=0.000000 s hg19.chr4_gl000194_random 81040 22 + 191469 TGTGTGGGGTCCGGTCAGCAGG e tetNig2.chr12 6877597 0 - 12622881 I e panTro2.chr4_random 3280867 140 + 6711082 I a score=24025.000000 s hg19.chr4_gl000194_random 81062 279 + 191469 GAGGGTGTCATCAGGGAGGACCTGATGTGTGGGGTCTGGTCAGCAGGGACCTGGTCAATGTGGGCTGCTGAGCACTGCTTGGATAAGCCAGGTGCAATGTGCATTATTGAAGGCCCTGTGGACAGCTGGGATAGCCCAGTGATGCCCAAGGGCCTAGTCAAAAGTGGACAAAGCACGTGTTTCGATGGACCTGGGAGATCCTGTTCAGAGATTCTGACAGGACAAAGGTAAAGGAAGAGCCAGAGTGGCTGCAGAGATGGTCACAGTCTATGGGCTGCA s panTro2.chr4_random 3281007 279 + 6711082 gagggtgtcgccagggaggacctgatgtgcagggtctggtcagcagggacctggtcaatTTGGGCTGCTGAGCACTGCTTGGATAAGCCAGGTGCAATGTGCATTATTGAAGGCCCTGTGGACAGCTGGGATAGGGCAGTGATGCCCAAGGGCCTAGGCAAAAGTGAACAAAGCCCGTGTTTGGATGGACCTGGGAGATCCTGCTCAGAGATTCTGACAGGACAAAGGTAAAGGAAGGGCCAGAGTGGCTGGAGATATGGTCACAGCCTATGGGCTGCA i panTro2.chr4_random I 140 C 0 e tetNig2.chr12 6877597 0 - 12622881 I a score=10007.000000 s hg19.chr4_gl000194_random 81341 70 + 191469 CAGGATGAAGGAGGC---CAGGGAGCAGGCAGGGTGGGCAGTTGGGGTTCAGGGAGAGGCAGGTGCATGCTGG s panTro2.chr4_random 3281286 70 + 6711082 CAGGATGGAGGAGGC---CAGGGAACAGGCAGGGTGGGCAGCTGGGGTTCAGGGAGAGGCAGGTGCATGCTGG i panTro2.chr4_random C 0 C 0 s tetNig2.chr4 8959584 72 - 9874776 CAAGCTGCAGGAGACGCTTCAGAAGTACG-ACGATGGCCAGTAGGAGGCCAGGAAGGGGTTGATGGATGCTGG i tetNig2.chr4 I 2303 N 0 a score=65002.000000 s hg19.chr4_gl000194_random 81411 728 + 191469 GAGGTCAGACCCTGTGAGGGCTTTGGGGGTGTCAGGTTGGGTAGGCTCCAGGCACTCtcactcacataggattccagaacactgctaaaaggctctgagtgtttgtccctcacataggattccagaacactgatgctattgtctgaatgtttgtcccccacataggattccagaagcttgctgctggggtctgaatgtttgtcccccatctaggattccagaacactgctgcgagggtctgaatgtctgtccctcacatatgattctagaacattgatgctagggtctgtatgtttgcccttaacatatgatttcaaaacactgctcctggattctgaatgtttgtccttcacataggaatacagaacactgctgctggagtctggaagtttgtcactcacatagaattccagaacactgctgtgaggatctgaatgtttgacccttacatgggattccagaacactgctgcgagggtctaaatgtctgtccctcacataggtttccagcacaatgttacgaggttctgaatgtttgtccctaacataggatttcggagcactcctgctgtgctctgaatgcttctccctcacataggattccagaacactgctacgagggtctgaatgcttatccctcatataggattccagaacactcctgctgtggtctgaatgtttgttcctcacataggattccagaatactcctgccgtggtctgaatgttt s panTro2.chr4_random 3281356 727 + 6711082 GAGGTCAGACCCTTTGAGGGCTTTGGGGGTGTCAGGTTGGGTAGACTCCAGGCACTCtcactcacataggattccagaacactgctacaaggctctgagtgtttgtccctcacataggattccagaacactgctgccattgtctgaacgtttgtcccccacataggattccagaagcctgctgctggggtctgaatgtttgtcccccatctaggattccagaacactgctgcgagggtctgaatgtatgtccctcacatatgattctagaacattgatgttagggtctgtatgtttgcccttaacatatgatttcaaaacactgc-cctggattctgaatgtttgtccttcacataggaatacagaacactgctgctggagtctgaatgtttgtcactcacatagaattccagaacactgctgcgaggatctgaatgtttgaccctcacatgggattccagaacactgctgagagggtctaaatgtctgtccctcacataggtttccagcacaatgttacgaggttctgaatgtttgtccctaacataggattccagagcactcctgctgtgctctgaatgcttctccctcacataggattccagaacactgctacgagggtctgaatgcttatccctcatataggattccagaacactcctgctgcggtctgaatgtttgtttctcacataggattccagaacattcatgctggggtctcaatgttt i panTro2.chr4_random C 0 I 1080 a score=0.000000 s hg19.chr4_gl000194_random 82139 3 + 191469 gtc e panTro2.chr4_random 3282083 1080 + 6711082 I a score=73801.000000 s hg19.chr4_gl000194_random 82142 827 + 191469 cctcacataggattccagaatactcctgccgtggtctgaatgtttgtccctcacataggattccagaacattcatgctggggtctcaatgtttcccttaacataggatttcagaacactgctcttggggtctgaatgtttgcccctcacataggattacagaacactgctgctggagtctgaatgtttgtcagtcacatagaattccagaacactgctacaagggtgtcaatatttctccctcacctagtattccagaacactgttgcaagggtctgaatgttggtccgtcatataggattccagaacactgctgctgtggtctgaatgtttgtccctcacatagaattccggaacactgctacaagggtctgaatgtttgtccttcacataccattccagaacactgctgccgtggtctgaatgtatgtccctcacataggattccagaacactgctactaggttctgaatgtttttcccacacctaggattccagaacacttctgctggtgtctgaatggttgttcctcacatat-attccaggacactgctacgagagtcttaatgtttgtccttcacgtaggattctagaacactgctcccatggtctgaatgtttgtccttcacatagcattccagaacactgctgctggggtctgaatgtctgcccctcaaatcagattccagaacactgctgctggggtttgaatgtctttccctcacatagaattccagaacatggctgggagggtctgaatgtttgtccctcacatgggataccagaacactgctgcaagggtctaaatgtctctccctcacataagat s panTro2.chr4_random 3283163 828 + 6711082 cctcacataggattccagaacactcctgccgtggtctgaatgtttgtccctcacataggattccagaacattcatgctggggtctcaatgtttcccttaacatagaatttcagaacactgctcttggggtctgaatgtttgtccctcacataggattacagaacactgctgctggagtctgaatgtttgtcagtcacatagaattccagaacactgctacgagggtgtgaatatttctccctcacctagtattccagaacactgttgcaagggtctgcatgttggtccatcatataggattccagaacactgctgctgtggtctgaatgtttgtccctcacatagaattctggaacactgctacaagggtctgaatgtttgtccttcacataccattccagaacactgctgccgtggtctgaatgtatgtccctcacataggattccagaacactgctactaggttctgaatgtttttcccacacctaggattccagaacacttctgctggtgtctgaatgattgtccctcacatatgattccaggacactgctacgagagtcttaatgtttgtccttcacatagcattccagaacactgctgctggggtctgaatgtctgcccctcaaatcggattccagaacactgctgctggggtctgaatgtctgcccctcaaatcggattccagaacactgctgctggggtttgaatgtctttccctcacatagaattccagaacacggctgggagggtctgaatgtatgtccctcacatgggataccggaacactgctgtgagggtctaaatgtctctccctcacataagat i panTro2.chr4_random I 1080 I 1175 a score=0.000000 s hg19.chr4_gl000194_random 82969 9278 + 191469 ttcaggacactgctatgaggttctgaatgtttgtccctcacataggattccagagcactcctgctgtggtctgaatatttgtccctcacataggattccagaacactgccacgtgggtctgaatgtttgccctcacataggattccagaacactcctgctgtagtctgaatgtttgaccctcacataggattccagaacactcctgctgtggtctgaaagttagctcatcacataggactccagaacactgctaagagggtctgaatgtccctcacattgtattccagaacactccttctgtggtctgaatgtttgttcctcacataggattcgagaacactcctgcagtggtctgaatgtttgtcccttacctaggattcgagaacattcacactgggatgtaaatgcttgcccttaacataggatttcagaacactgctcctggggtctgaaagtttgtccctcacataggattccagaactctcctgctgtggtctgaaagtttgtactgcacataggattccagaacactgctgctgtggtcggaatgtttttctgtcacataggattccagaacactgcagctgggttctgaatgtttgtccctcacataggatttcagaacactgctacgagggtctgattgttggtccctcacataggattcctgaacactgctgctgggctctgaatgtttgtccctcacattggattgcagaacactactgctatggtctgaacgtttgtctttcacataggattccagaacactgcggctggggtctgaatgtccctgacataggattccagaacattgctatgagagtctgaatggttgtctttcacatagcattccagaacactgctacgagggtctgaatgttggtccctcacacaggattccagaacactcctgctgaggtctgaatgtttgtccctcacaaaggattccagaacactgctatgagggtctgaatatttgtccctcacataggattccagaacactcctgctgtggtctgaatggttgtccctcacaaaggattccagaacactcctgctgtgatctgaatggttgtccctcacataagattccggaacacttctgctgtggtacgaatgtttgtgtctcctgtaggattccagtacactgctacgagggtctcaatgtttgtcctcacataagattccagaacactgctgctggggtctgaatgcttgtccctcacatacgattacagaacactgttgctggggtgtgaatgtttgtccctcacatgggattccagaccactgctgctggggtctcaatgtctgtccctcaaaaaaggattccagaacactgttacgagggtctgaatttttgttcctcacttaagactgaagaacactgcttcgagggtctaaatgtctgtccttcacataggattccagaacactgctacgagggtctgaatgtttgtccttcacatagcatttcagaactgccatggtctgaatggttgtccctcacatagtattccagaacactgctatgagggtctgaatgtttgtacctcacataggattccagaacactgctatgagggtctgaatgtttgtacctcacataggattccaggacactgctatgagtgtttgaaagtttttccctcacataggattccagaagactgctgctggggtctgaatgtctgtccctcacatcggattccagaacactgctgctggggtttgaatgtctgtgcctcacatagaattccagaagactgctgggagggtctgaatgtttgtccctcacatacgattccagaacactgctacgaggttctgaatgtttgtccctcacataggattcccgagcactcctgctgtggtctgaatgtttttccctcacataggattccagaacactgctacgagggtctgaatgtttgtcctttacataggtttccagaacactccttctgaggtctgaatgtttgtccctcacataggattccagagcactcctgctgtggtctcaatgtttttttaatcacataggattccagaacacttctacaagggtctaaatgtttgtccctcacataggattccagaatactcctgctatggtcttaatgcttgtccctcacataggattccagaacattcatgttggggtctgaatgtttgcccttatcataggatttcagaacagtgctcctggggtctgaatgtttgtccttcatataggatttaagaacactcctgctttggtctgaaagtttgtccctcacataggattccagaactctcctgctgtggtctgaaagtttgtccttcacgtaggattccagaacactgctgctgtggtttgaatgtttgtccctcacataagattccagaacactgctacgagggtctgaatgtttgtccctcacataggattcctgagcattgttgccgtggtctgaatgtttgtcattcacataggattccagaacagtgctacgagggtctgaatgtttgtccctcacataggattccagaacacttctgctggtgtctgaatgtttgtacctcacataggattccagaacactgctgctggggtctgaacgtctgtccctcacataggattctagaacactgctgttggggtttgaatgtctgtccctcacatagaattccagaacactgctgcgagtgtctgaatgtttgtcccacagatgggattctagaacactgctgcgagggtctaaatgtctgtccctgacataacattccagcacactgctacaaggttttgaaatgtttgtccctcacataggattccagagcactcctgctgtggtctgaatgtttgtccctcacataggattccagaacactcctgctgtggtctgaatgtttgcccctcacataggattccagaacattcctgctgtggtctgattgttcttcatataggattccagaacactgctacgaggttctgaatttttgcccctcacataggattgcagaacactgctacaagggtttgaaagttttcccctcacataggattccacaacactactgctggggtctgaatgtttgtccctcacataggattcccgagcactcctgctgtggtctgaatgtttttccctcacataggattcctgaagactgctgctgtcactatagtcgttgcgagtgtctgaatgtttgaccttcaccaaacactaaatattctgcccctttagtcttggactttccagcctccagatctgtgagcaataatctctgttgtttatgaattactcagtctaaagtattttgttatagtagcctaaagagactaagaGAgcatcacctgccctgtcacctcatcaccgcattactaaagctatactaacagcagtcacctttagtgggtgcttcatgcatgagaataaagggaaaaaattgcaaggcatactaaaatccaaaaaaagaaaaaaatacaatttgtgtcaacagagcaagcttcagaagcagacaaagttatgattttggaaatttttttaaacctctggagaatatgctaagggtctaatgaatgaagtagacagcattcaagtgtagatgggtaatgtaatcagaaagacagacatcgtaagaaacttcaacataatgtagtggtaaaaaatgtgttaaataactgaagaatacctctgatggcttattagtagactggactcagctgagtaaagaatctctgagcttgaggatttatcatcagaaacttcgaaaactaaagaaaagaaacactgaaaagaacagaagatgatatccaagactgtgggacaactacaaaaggtgaaacagagtaatgagaataccaggaggagaagaaatagaagaaagttttgcaacaaccatgtctgagaacttccagtatttatgtcagacaccaaaccaaagatccaggaagctcagagaacaccaagcagaataaatgccaacaacctacacttggacatataattttcaaactatatgaaataaaagataaaggaaaactctgaaagaaaccagaggtggggcagaaaacaccttacctacagagacacaaagataagaactgcattcaacattgcagaaactgtgaaagcaagaagacagtgaaatgaaaaattcaaaatgttgacagaaaaaaacccaccaacctaagtttctgtacccactgaaaccacccttcaaaagtgaaggagaattaaggccttcctcagaaaaataaaaattcaagaaacttgttgccaggagacctgtcttgcaagaaatgttaaatgaaattctttagagggaaacaaaagatatataactgaaacctggatcaacatttttttaaaaagagcattaaagaattgtggtacaataaaaagctatgtatttattcttaattgatctgaccaagaagttcatagacaataacaaatacacacagatagattatgtatgcttatacacaattgaaatgagtaacactaatacaaggaatggaatggaaggatGGGAGGGAGGAATTGTggtacaataaaaacatgtatttattcataattgatctgaccaataagtttgtagataataataaatacacacagatagattatgtgtgcttatacacaagtgaaataaggaacaataatacaaggaatggaatggaaggatgggagggaggaatcaggtgttttctttgttaagcaggtagtcacccatgaagtgggatagtgttatctgaaagtggacttgaattggttgtaaatgtatattgaggaattaggtgtgttcttttttaagcaggtagtcttatttgtgggatagtgggatagtgttatttgaaagtggacttgaatttgttgtaaatgtTACTgaggaattaggtgttttgtttgttaagcaggtactcttattcgtgggatagtgggatagtgttatttgaaagtggacttgaattggttgtaaatgtatattgcaaattctgtggcaactagttaaaaaaagttttaaaaagagaagtacatgctaagaaagacagggaaaatgtagtcatctaaaatcatcaatgaaaactgcaaaaggcagaaaaagagtggtagacaaaagaatcgagactgaggagaatgaatagaaaatagtaacaaatatagtagatattaatccaatgatatcaataatcactttgaatgctaatggtatgaatgtaccaattcaaagatagagattgtcagagtctatcaaaagacagatacatcttgtttcactgcactttgctttattgtgttttgtgaccatgtgttttacatattgaaggtttgtggccaccctgcaataagcaggtctcactggcaccattgttcctacagcaagtgctcacttcacgtctctgtgtcacatttcggtcattctcacagtattttaagctttttattattgaatctgttatagtgatctgtaatcagtgatctttaatgctactgttgtcattgttttgggaaccacaaatcacaccaggataagacagcaaacaattgacaaatgcgtttgttctgactgccccaccaatgggccatttctctttctctctctttttctcaggcttctttttattaatattaaaatgtggccaattaataaccctacaatagcctctgtatgttcaagtgaaagaagagttgcatgtctgtcactttaaaccaaaaggaagaaataattaagcttagtgatgaaggcatgctgtaagcaagacaggccagtagctagacctcatgcaacaaacacttagccaagttgtgaatgcaaaggaagtgttctggaaagaaatttaaagtactactccagtgaatacatgaatgataaaaagataaacaatcttgctgctgttatgaagaaagtttaattggtctagatagaagataaaaaaaaacaaaaaaaaattccattaagcctaagcctaactctctttttactttttttctttgtttttgagacagagattcattcttcttgcccaagctggagtacaatggcgtgatcttggctcatcgcaacctctgcctcccaagttcaagccattctcctgcctcagcatcccgagtagctgggattacaggcatgcaccaccatgcctggctaattttttgtatttttagtagagacggggtttctccacgttggtcagactggtgtcgaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtgctaggattacaggtgtgacagccaccgcacccggcctcccttcaattctatgaagacttagagaggtgaggcagctgcagaagaaaagtctgaagctagaagagcttgtttcttgaggtttaaggaaaaaagtcatctccataacataaaagcacaacataaagcagcaagtactgatggaaaagctgcagaaagctatctagaagataattgattaagatggctacactaaacagatttgcaatggagacaaaacagccttctactagaaggagatgccatccaggatgttcccagctagagaggagttgatgcctggctttaaggcttcaaaggacatgctgactcttttgttaacgcctaatgcaattggtgatgttaacttgaaaccaatgatgatttactattctgaaaatccaagggccctgaagaattatgataaaacacagctctgcctgtactctacaaatgggaacaaagcctggatgacagactatcggtttacaaatatggtttactgaatatcttaagcccactgtcgacaactactgctcaagaaataagattcctttcaaagtattaccactcactgacaatgccgctggtactcaaggacttttacagagatgtataaagagctgaatattgttttcatgcctactaacacaacattcattctggtgcccttggatcaaagaataatttcaactttcaagtcttatcacttaaaaaatatatttcataaagctatagcttctctagaaagtgattcctttgatggatctgggcaaaataattgaaaacctactggaaaggattcaccattctagatgccattgagaacattcatgatttaaaaaagatcaaaatagcaacattaggagaagttggggctgggcttggtggttcacgcctgtaatcccagcactttgggaggccaaggcacgtgggtcacgaggtcaggaatttgagaccagcctggccaacatagtgaaatcctgtctgtactaaaaacacaaaaaaatattagctgggcctggtcgggggtgactgtaatcccaaacacttgggaggctgaggcaggagaattgcttgaacatgggaggtggaggttgccatgagctgagatcgcatcactgcactccagcccaggcaagacttcatctcaaaaaaaaaaaaaaaaagagagagagagagaagttgggaagataattccaaccctcacagatgacacaggggttcacgacttctgtggaggaagtaactgcagatatggtggaaataacaagagcactagaatcagagacagagcctgaagatctggcgagactgaagcagcctctggagaaaacgtgagaggatgagttgcttccacggatgagcaaagaaagtggtttcttgagatgaaatctactcgtggtgaagacagtgtaaacaatgttgagatgacaacagatttagaataaacttggtacaacagaaggaaggcttgacaggattgaacccaatgatttacaataatacataaacttagttggtacagcagtatgaaggtttgacagcattgaatccaattttgaaagttctactgtgggtaaaaagctatcatcgtatgctacagttaattcttttgtgaaagggagagtcacttgacacagcaaacttcaacgttgtcttattttaagaaattgtcacagccaccccaacgctcagcaaccaccaccttacattaacgtaagaccctccatcagaaagaagactgaaacttggccaggttcagtggctcacacctgtcatcccaacaccttgggaggccaaggtgggtggattgcttgagcccaggacgtcaaggcaacatggcaaaaccccatctctacaaaaaaaaaaatacaaaaattagctggacatggtggcatgcacctgtagtcccagctagtcaggagtctgaggtgggggtttgattgagcatgaggttgaggctgcaattactccagcctgagccacagagtaaaaccctgtcacacacacacaaaaagattgcagctttctgaaggctcagatgactgttagcacttgttaacaataaagtatttgtaaattaaagtgtgcatactttgtagacatatgctattgcacactttatacagcacagtataaacatacttttacatgcactgggaaaccaaaagaaattgtatcacactttattgcagtggtctggaaccaaacccccatatatctctgatgcatgGCCGTCctgtattgtacacttaaaaaaatacttaagagggtatatcttaggtgaaatggtcatctcattttttttttttgagacggagtcacactctgttgcccaggctggagtgcagtggcacgatctcggctcactgcaagctctgcctcctgagttcacaccattatcctgcctcagtctcccgagtagctgggactacaggtgcccgccatcacgcctggctaattttctgtatttttagtagaaacggggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccactcctggtctcattttttaaaaagggtgagaatgagaaatatatggggggtgatggtcaagtttacggtattatttgttgtgatgagtcctggggcgaatatttatctctatactcattaagatgtatatattcggtgtcacacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatctgaggtcaggcgttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaaaatacaaaaattagccgggcgtgggggtgcacgcctgtgatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggtggcagttagctgagatcgtgtcactgcactccagcctgggcaacatgagtaaaacCTCCATAacacacacacacacacac e panTro2.chr4_random 3283991 1175 + 6711082 I a score=16756.000000 s hg19.chr4_gl000194_random 92247 184 + 191469 acacacacacacacacacacacacacacacacacacacggtatatattaaatatgtgtaatttttgtatgtcaaccacaccttaGttttattttattttttttttttgagacagagtctcactctgtcacccaggctggagtccagtggtgcaatcttggctcactgcaagctccacctcccag s panTro2.chr4_random 3285166 184 + 6711082 acacacacacacacacacacacacacacacacacacacggtatatatttaatatgtgtaatttttgtatgtcaaccacaccttaGttttattttattttatttttttgagacagagtctcgctctgtcacccaggctggaatccagtggtgcaatcttggctcactgcaagctccacctcccag i panTro2.chr4_random I 1175 C 0 a score=318080.000000 s hg19.chr4_gl000194_random 92431 1237 + 191469 gttcacaccattctcctgcctcaacctccagagtagctggaactacaggcacctgccaccacgcccggctaattttttgtatttttagtagagatggcgtttcacagtgttagcccggatggtctcgatctcctgacgtgatctgcctgcctcagcttcccaaagtgctgcgattacaggtgtgagacaccgcgcccagACAAtttttatttttttgagacagagcctcactctgtcacccaggctggagtgcagtggcactatcttggctcactgcaacctctgcttcccatgttcaagcaattctcctgcctcagtctcccgagtagctgggactacagatgcatgctatcacgcctggctaattttttgatttttaatagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcatgtgatctgcccacctcagcctcccaaagtgctgggattacaggtgtaagccactgcacctggcaatttttaaatatatataattaaaaattaataaaaaaCAGGTATTTGCAAGTTTCCATTTTGTTATATGCTTATTATTCTTTATCTTTATGTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTGAAATACAAATAAATATGTCTGAAAttttttcttttttc-tttttttttgagagggactctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcccagattcaagtgattctccagcctcagcctccagagtagctgggattacaggcacccgccatgacacccagctaacttatatattttttttctatttttagtaaagacagggtttcaccatgttggccaggctggtctccaactcctgacctcagatgatcctcccgtctcggcctcctcaagtgctgggattacaggtgtgagccactgtgcctggccTGGAATTTTTTTCTAAAATTTACATTTCTGAGTTAAGAATGCTTAAAATATTATAAAAATAGAAGCACAATTCATTATGTGTTTCATTAATTACCTTTATTAAAAACAACAAAATTATattacaataggacaaaaaatgtttaagcaaatgaaaatgaaaccatgacatacccaaactcaggaggaggcaacaaaggcagtgctaaagggaagcttacagctgcagatgcttaaattaaaaagaagaaaggtctcaaaccca s panTro2.chr4_random 3285350 1237 + 6711082 gttcacaccattctcctgcctcagcctccggagtagctggaactgcagacacccgccaccatgcccggctaattttttgtatttttagtagagatggcgtttcacagtgttagcccggatggtctcaatctcctgacgtgatctgtctgcctcagcttcccaaaatgctgcgattacaggtgtgagccaccgcgcccagACAAtttttatttttttgagacagagcctcactctgtcacccaggctggagtgcagtggcactatcttggctcactgcaacctctgcctcccatgttcaagcaattctcctgcctcagtctccccagtagctgggactacagatgcatgctatcacgcctggctaattttttgatttttaatagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcatgtgatctgcccacctcagcctcccaaagtgctgggattacaggtgtaagccactgcacccggcaatttttaaatatatataattaaaaattaataaaaaaCAGGTATTTGCAAGTTTCTGTTTTGTTATATGCATATTATTCTTTATCTTTATGTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTGAAATACAAATAAATATGTTTGAAAttttttcttttttc-tttttttttgagatggactctcattctgtcacccaggctggagtgcagtggtgccatctcagctcactgcaacctccgccgcccagattcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccatgacaccgagctaacttttatattttttttctatttttagtaaagacagggtttcaccatgttggccagggtggtctccaactcctgacctcagatgatcctcctgcctcggcctcctcaagtgctgggattacaggtgtgagctactgtgcctggccTGGAATTTTTTTCTAAAATTTACATTTCTGAGTTAAGAATGCTTAAAATATTATAAAAACAGAAGCACAATTCATTATGTGTTTCATTAATTATCTTTATTAAAAACAACacaattatattacaataggacaaaaaatgtttaagcaaatgaaaacgaaaccatgacatacccaaactcaggaggaggcaacaaaggcagtgctaaagggaagcttacagctgcagatgcttaaattaaaaagaagaaagatctcaaaccca i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42318272 1228 + 202140232 gttcacaccattctcctgcctcagcctcc-tagtagctggaactacaggcacctgccaccatgcccggctaattttttgtatttttagtagagacggcgtttcactgtgttagcccggatggtctcaatctcctcacatgatctgcctgcctcagcctcccaaagtgctgctattacaggtgtgagccactgtgcccagGCAAtttttatttttttgagacagagtctcactctgtcacccaggctgcagtgcagtggcactatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcaggctcccgagtagctgggactacagatgcatgctatcacacctggctaattttttgatttttaatagaaatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcatgtgatctgcccacctcagcatctcaaaatgctgggattacaggcataagccactgcacccagcaatttttaaatatatataattaaaaattaataaaaaaCAGGTATTTGCAAGTTTCCGTTTTGGTATATGTTTATTATTCTTTATCTTTATGTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTGAAATACATATAAATGTGTCTGAAATGttttcttttttcttttttttttgagatggagtctca--ctgtcgcccaggctggagtgcagtagtgcaatctcagctcactgcaaactctgcctcccagattcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccgccaccacacccagct--tttatat-ttttttttctatttttagtaaagacagggtttcaccatgttggccagactggtctccaactcctgacctcagatgatctgcctacctcagcctcccaaagtgctgggattacaggtgtgaaccactgtgcctggccTGGAATTTTTTTCTAAAGTTTACATTTCTGAGTTAAGAATGCTTAAAATATTATAAAAAGAGAAGCACGATCCATTATGTGTTTCATTAATCATCTTTATTAAAAACAATGCAATTATattacaataggacaaaaaa----taagcaaatgaaaacaaaaccatgacatacccaaactcagaaggaggcaacaaaggcagtgctaaagggaggcttacagctgcagatgcttaaattaaaaagaagaaagatctcaaaccca i ponAbe2.chr3 N 0 C 0 a score=10316.000000 s hg19.chr4_gl000194_random 93668 113 + 191469 tgctaaagggaagcttacagctgcagatccttaaattaaaaagaagaaagatctcaaacccaTGCtaaagggaagcttacagctgcagatgcttaaattaaaaagaagaaata s panTro2.chr4_random 3286587 113 + 6711082 cgctaaagggaagcttacagctgcagatccttaaattaaaaagaagaaagatctcaaacccatgctaaagggaagcttacagctgcagatgcttaaattaaaaagaagaaaga i panTro2.chr4_random C 0 I 9678 e ponAbe2.chr3 42319500 0 + 202140232 C a score=209927.000000 s hg19.chr4_gl000194_random 93781 839 + 191469 tctcaaaccCTTGCtaaagggaagcttatagctgcaggtgcttaaattaaaaagaagaaagatctcaaatcaataacctaacattacacctgaaggg-gggaaaaaaaactaatgacaaaccaagcaaaaggaagaaaataacagattagagcagagataagcagaataagaccagaaaaaaaagg----aaaaaaacaatgagtttgttttttttaaagatcaataaaaattttaaaactcacagctatattaagaaaaaaagagaaatctcaaatactaaaatcataaataaaataggtgacagtacaacagatgccacagaaatgaaaaagattacaagagactaatgtgagcaaccatatgccacaaaactgggcaacctagaataaatttataaattcctagaaacacaaaccaccatactgcatcacggagaaataaaaaatccaaagagacctttaactagtaagaagattcaaccagtaatcaaaaaccccaccaaaaagaaaagtccaggtccagataacttcactggaaaattttaccgaacatttcaagaagaattaatgccaatcctctgcaaaatattccaaaaatgttcaaaaaccagaaggggacattccaatccattctatcaggtcaacatttatctggttccagagccagatgaacaccttttgtaataaaaacactcaaagaattagtaatatatggaaactcctcagtaaataaagattatacatgaaaagctcacagctaacatcatactcaatggtgaaagactaaaatcttttcctctaggatcaggaataagatagcaacatctcttccttccacttcta s ponAbe2.chr3 42319500 826 + 202140232 -----------tgctaaagggaagcttatagctgcaggtgcttaaattaaaaagaagaaagatctcaaatcaataatctaacattacacctgaagg--gaaaaaaaaaactaatgacaaaccaagcaaaaggaagaaaataacagattagagcagagataagcagaataagaccagaaaaaaaaaggaaaaagaaaacactgaggttg-tttttttaaagatcaataaaaattttaaaactcacagctatatttag---aaaagagaaatctcaaatactaaaatcataaataaaagaggtgacagtacaacagatgccacagaaatgaaaaagattacaagagactaatgtgagcaaccatatgccacaaaactgcgcaacctaaaataaatttataaattcctagaaacacaaaccaccatactgcatcatggagaaataaaaaatccaaagagacctgtaactagtaagaagattcaaccagtaatc-aaaaccccccaaaaaagaaaattccaggtccacataacttcactggagaattttaccaaatatttcaagaagaattaatgccaatcctctgcaaaatattccaaaaatgttcaaaaaacaggaggggacattccaatccattctatcaggtcaacatttatctggttccagagccagatgaaCtcctttcataataaaaacactcaaagaattagtaatagatggaaactcctcagtaaataaagatcgtacatggaaagttcacagctaacatcacactcaatggtgaaaaactaaaagcttttcctctaggatcaggaacaagataccaaaatctcctcctgccacttcta i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3296378 833 + 6711082 tctcaaaccCTtgctaaagggaagcttatagctgcaggtgcttaaattaaaaagaagaaagatctcaaatcaataacctaacattacacctgaagggagaaaaaaaaaactaatgacaaaccaagcaaaaggaagaaaataacagattagagcagagataagcagaataagaccagaaagaaaggg----aaaaaaacactgagtttg-tttttttaaagatcaataaaaattttaaaactcacagctatattaagaaaaaaagagaaatctcaaataataaaatcataaataaaagaggtgacagtacaacagataccacagaaatgaaaaagattacaagagactaatgtgagcaaccatatgccacaaaactgggcaacctagaataaatttataaattcctagaaacacaaaccaccatactgcatcacggagaaataaaaaatccaaagagacctgtaattagtaagaagattcaaccagtaatcaaaaaccccaccaaaaagaaaattccaggtacagataacttcactggaaaattttaccaaatattgcaagaagaattaatgccaatcctctgcaaaatattccaaaaatgttcaaaaaccagaaggggacattccaatccattctatcaggtcaacatttatctg------gagccagatgaacaccttttgtaataaaaacactcaaagaattagtaatatatggaaactcctcagtaaataaagagtatacatgaaaagctcacagctaacatcatactcaatggtgaaaaactaaaatcttttcctctaggatcaggaataagatagcaacatctcttcctgccacttcta i panTro2.chr4_random I 9678 I 9905 a score=572840.000000 s hg19.chr4_gl000194_random 94620 2244 + 191469 ttcatcacagtactggaatttctactcagaataattagtcaagagaaagtaataaaaaggatgcaaattggaaaggaaaaagtacaaaattttgttcacagacaacaggatgtaatgggtaaaaatcctgaaattcc-caaaatattggtaaaataatgaaattcaac-aaagtttcaggatacagtaacacacacaagtcagttgcatttccataaactaacaatgaacaatctgcaaataaaattttaaaaagagaggccaggtgcagtggctcacacttataatcccagcactttgggaggccaaggcgggtagaccacctgaggtcaggagttcgtgaccagctgggccaaacccatctctaaaataaatagtaaagctctgtctctattaaaaatacaaaaattagctgggcgtagtggcagacacctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacttggaaggtggaggttgcagtcagctgagattgtgccactgcgctccagcttaggaaactgag----acgccatctc-aaagaaaagaaa-aaaggaaagaaagacagagaaagaaaaga----aaagaaagataaaacaaaagaaaataaatttttaaaaagaatgacatttggccgggtgcagtggttcatgcctgcaatcccagcagctt-gggaggccgaggcgggcagatcacctgaggtcacaagttcaagacttgcctggtcaacatggagaaaccctgtctcaactaaaaataccaaaaaattagctggacgtgttggcgcgcacctgtgatcccaggtacttgagaggctgaggttggagaatcgcttgaataaagaaggtgcaggttgcagtaagctgagatagtgccactgcactccagcctgggagacagagcaagactccatctcaaaaaaaaaaaa---------gtattacatttacaacagcattataaaaattaaaaataagcttaaccaaaagggcaaaaaagatttgaacacagaaaactacaaaacactgttgaaagaaattaaacacaaataaatgaaaagaaaagctgtgtttgcagattagatgatttcatcttggaatgatgtcaacactacttgaggtgacctagattcaatacaatccttataaagattccaatgacatttttgataaacagaaaaacctatcctaaaattcatatggaatctccagggcccatgaataggcaaatcaatcttgaagcagaacaaaattaaaggtctcaaaacaattacaaaactgcaataagccaaaaaaaaa--gtggtcatggcgtaaagacatacttgacacacttatggaccaacacaacagagacctcagaaaccaaccctggcatatatggtctgatgatcttccacaaggatgccaagaccactcaatggcgaaggacagtttcttcaacaaatggtgttgggaaaattgtatatctacatgcaaaataatgaagttggactcttaccttacaccacgttaaaattaattcaaagtgaattataaacctaattgtaaaactagaactatcaaactcctagggaaaacaaatttggaaaatgctttatgatgatgaatttgtcaacaatttttaagatatgacattaaaagctcaggcagtaaaagcaaaaatatatcaaacctaaaaacttctgtaccacaaaggtcacaaccaacagggtaaaaggcaaactgtagaataaaagaaaataccagttgagtgtcccttatttgaaatgcttgggatgtgtttcagattttgtaatatttgcactattcttactggttgagcatctcgaattcaaacacctgagtctgcgatgctccaataagcatttcctttgagtgtcatgttggcactcaaaaagtttcagactttggagcatttgggatttcagatttttggatcacagacattcaacctatagttgcacatcatgtatctcataagaagtgaacattcagaatacgtaaagtactcctacaGAGAGACTACCAGAAGCAGAGAGGAGCAAACACATTTTCAAACTAGGGCACCTCCTATCTCTCCCGGATTCCAATTAGGGCAGAGTAAGTGCTAGTTATCTGCCAACCCAGGATTAGGCCCTGCAGCTGCAGTGAAAATAATCACAGAAGAAAACTAAGAACTAAAAAATGGAGAAAGTGAGACATCAAACTAAAATTACTAGAAACCCCCAGGAAGAAGGAAAAAGAAA s panTro2.chr4_random 3307116 2258 + 6711082 ttcatcacagtactggaatttctactcagaataattagtcaagagaaagtaataaaaaggatgcaaattggaaaggaaaaagtacaaaattttgttcacagacaacaggatgtaatgggtaaaaatcctgaaattcc-caaaatactggtaaaataatgaaattcaac-aaagtttcaggatacagtaacacacacaagtcagttgcatttccataaactaacaatgaacaatctgcaaataaaattttaaaaagagaggccaggtgcagtggctcacacttacaatcccagcactttgggaggccaaggcgggtagaccaactgaggtcaggagttcgtgaccaactgggccaaacccatctctaaaataaatagtaaaactctgtctctattaaaaatacaaaaattagctgggcgtagtggcagacacctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacttggaaggtggaggttgcagtcagctgagattgtgctactgcactccagcttaggaaactgagtgagacgccatctc-aaagaagagaaagaaaggaaagaaagagagagaaagaaaagg----aaagaaagataaaacaaaagaaaagaaatttttaaaaagaatgacatttggccgggtgcagtggttcatgcctgcaatcccagcagttt-gggaggccgaggcgggcagatcacctgaggtcacaagttcaagacttgcctggtcaacatggagaaaccctgtctctactaaaaataccaaaaaattagctgggcgtgctggcgcgcacctgtgatcccaggtacttgagaggctgaggttggagaattgcttgaataaagaaggcgcaggttgcagtgagctgagatagtgccactgcactccagcctgggagacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaagtattacatttacaacagcattataaaaattaaaaataagcttaaccaaaagggcaaaa--gatttgaacacagaaaactacaaaacactgttgaaagaaattaaacacaaataaatgaaaagaaaagctgggtttgcagattagatgatttcatcttggaatgatgtcaacactacttgaagtgacctagattcaatacaatccttataaagattccaatgacatttttgataaacagaaaaacctatcctaaaattcatatggaatctccagggcccctgaataggcaaatcaatcttgaaacagaacaaaattaaaggtctcaaaacaattacaaaactacaataagccaaaacaaaaatgtggtcatggcataaagacatacttgacacacttatggaccaccacaacagagacctcagaaaccacccctggcatacatggtctgatgatcttccacaaggatgccaagaccactcaatggcgaaggacagtgtcttcaacaaatggtgttgggaaaattgtatatccacatgcaaaacaatgaagttggactcttaccttacaccacgttaaaattaattcaaagtgaattataaacctaaatgtaaaactagaactatcaaactcctagggaaaacaaatttggaaaatgctttatgatgatgaatttgtcaataatttttaggatatgacattaaaagctcaggcagtaaaagcaaaaatatatcaaacctaaaaacttctgtacctcaaaggtcacaaccaacagggtaaaaggcaaactgtagaataaaagaaaataccagttgagtgtcccttattagaaatgcttgggatgtgtttcagattttgtaatagttgcattattcttactggttgagcatctcgaattcaatcccctgagtctgagatgctccaataagcatttcctttgagtgtcatgttggcactcaaaaagtttcagactttggagcatttgggatttcagatttttggatcagagacattcaacctatagttgctcatcatgtatctcataagaagtgaacattcagaatacgtaaagaactcctacaGAGAGACTACCAGAAGCAGAGAGGAGCAAACACATTTTCACAGTAGGGCACCTCCTATCTCTCCTGGATTCCAATTAGGGCAGAGTAAGTGCTAGTTCTCTGCCAACCCAGGATTAGGCCCTGCAGCTGCAGTGAAAATAATCACAGAAGAAAACTAAGAAATAAAAAATGGAGAAAGTGAGACATCAAACTAGAATTACTAGAAACCCCCAGGAAGAAGGAAAAAAAAA i panTro2.chr4_random I 9905 I 1404 s ponAbe2.chr3 42320326 2248 + 202140232 ttcaccacagtactggaatttctactaagaataattaggcaagagaaataaataaaaagcatgcaaattggaaaggaagaagtacaaaattttgttcacagacaacaggatgtaatgtgtaaaaatcctgaaattccacaaaatactggtagaataatgaaattcaacaaaagtttcaggatacagtaacacacacaagtcagttgcatttctataaactaacaataaacaatctgcaaataaaattttaaaaagagaggccaggtgcggcggctcacgcttgtaatcccagcactttgggaggccaaggtgggtggatcaccagaggtcaggagttcatgaccagctgggccaatcccatctctaatataaatagtaaaactctgtctctattaaaaatacaaaaattagctgggcatactggcaaacacctgtagtcccagctacctgggagactgaggcaggagaattgcttgaacttggaaggtggaggttgcagtcagctgagattgtgccactgtgctccagcctaggaaagagagtgagatgctgtctcaaaaaaaaaggaagaaaggaaagaaagagagagaaagaaaataaaacaaagaaaaagaaaacaaaagaaaagaaatttttagaaagaattacatttggccaggcatggtggctcatgcctgcaatcccagcactttgggggggccaaggcgggcagatcacctgaggtcacaagttcaagactagcctggtcaacatagaaaaaccctgtctctactcaaaat-ccaaaaaattagctgggtgtggtggcgcacacctgtgattccagctacttgagaggctgaggttgaagaatcgcttgaataaggaaggcagaggttgcagtgagctaagatagtgccactgcactccagcctgggagacagagcaagactccatctcaaaaaaaagaaa-------------tacttttacaacagcattttaaaaattagaaataagcttaaccaagagggcaaaa--gatttgaacacagaaaactacaaaacactgttgaaagaaattaaacacaaataaatgaaaagaaaagctgggtttgcagatcagatgatttcatcttggaatgatgtcaacactactggaagtgacctagattcaatacaatccttataaagattccaatgactttttttataaacagaaaaacccatcctaaaattcatatggaatctccagggcccatgaataggcaaatcaatcttgaaacagaacaaaatt-aaggtctcaaaacaattacaaaactgcaataagccaaaaaaaaa-tgtggtcatggcataaagacacacttgacacacttatggactaacacaacagagacctcagaaaccaaccctggcatatatggtccaatgatcttccacaaggatgccaaggccactcaatgttgaaggatagtttcttcaacaaatggtgctgggaaaattgtacatccacatgcaaaacaatgaagttggactcttaccttacaccatgttaaaattaattcaaagtgaattataaacctaaatgtaaaactagaactatcaaactcctagggaaaacaaattttgaaaatgctttatgacaatgaatttgtcaataatttttaggatatgacattaaaagctcaggcagtaaaagcaaaaatagatcaaacctaaaagcttctgtacctcaaaggtcacaaccaacagagtaaaaggcaaa--gtagaataaaagaaaataccagttgagtgtcccttatttgaaatgcttgggatgtgtttcagattttgtaatatttgcattattcttactggttgagcatctcgaattcaaacacctgagtctgagatgctccaataagcatttcctttgagtgtcatgttggcactcaaaaaatttcagactttggagtatttgggatttcagatttttggatcagagacattcaacctatagttgcacatcatgtgtctcataagaagtgaacatccagaatacataaagaactcctacaGAGAGACTACCAGAAGCAGAGAGGAGCAAACATACTTTCGCACTAGGGTACCTCCTATCTCTCCTGGATTCCAATTAGGGCACAGTAAATGCTAGTTCTCTGCCAACCCAGGATTAGGCCCTGCAGCTGCAGTGAAAATAATCACAGAAGAAAACTAAGAAATAAAAAATGGAGAAAGTGAGACATCAAACTAAAATTACTAGAAACCCCTAGGAAGAAGGAAAAAGAAA i ponAbe2.chr3 C 0 C 0 a score=37570.000000 s hg19.chr4_gl000194_random 96864 147 + 191469 CCAAGAAAACAGAAAAACAATTAAACCAGTTAATTAAACCTTGGCATGACCAGAAGATCAGAGTTTCCTAAAGGAGTGGAAATTCATTGATTTGAAGAGGATTTATTGATTACTGATTTGAAGAGGAAGAAAAACCATGAATGGTCT s panTro2.chr4_random 3310778 147 + 6711082 CCAAGAAAACAGAAAAACAATCAAACCAGTTAATTAAACCTTGGCATGACCAGAAGATCAGAGTTTCCTATAGGAGTGGAAATTTATTGATTTGAAGAGGATTTATTAATTACTGATTTGAAGAGGAAGAAAAACCATGAATGGTCT i panTro2.chr4_random I 1404 C 0 s ponAbe2.chr3 42322574 147 + 202140232 CCAAGAAACCAGAAAAACAATCAAACCAGGTAATTAAACCTTGGAGTGACCAGAAGATCAGAGTTTCCTAAAGGAGTGAAAATTTATTGATTTGAAGAGGATGTATTGATTATTGATTTGAAGAGGAAGAAAAACCATGAATAGTCT i ponAbe2.chr3 C 0 C 0 a score=4377.000000 s hg19.chr4_gl000194_random 97011 19 + 191469 --------------GAAGCAAAAGCCTAGTGTC s ponAbe2.chr3 42322721 19 + 202140232 --------------AAAGCAACAGCCTAGTGTC i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3310925 19 + 6711082 --------------AAAGCAAAAGCCTAGTGTC i panTro2.chr4_random C 0 C 0 s echTel1.scaffold_321539 44621 33 + 139270 GCGGGGCTGTAATCCAGCCGGGGGCCGACTGTC i echTel1.scaffold_321539 N 0 N 0 a score=153766.000000 s hg19.chr4_gl000194_random 97030 628 + 191469 TGAAGAAGTCAGTAGGGTGAAAACAAGAGCTGGCCAGAATATCCACAGATGGTGACAAGTTGGCAAAGCCTTTACTAGACTACTCGTGAGGCTAACTAGAGGCCAAGGAGCCAACACTGCTCCTGTCCTTACAGAGAGACCCTACACAGGATTCCCAGATATACATGGAAGGACAACATCTTATCAGGTCTTCTCTGTGCAGATGTGGTTATCATTCCAAATAATGAGCTCCAGCACCAAGACTGTTCCATCCTCAATTGCTTTGAGTGGGCAATGTAGGCTCTCCACACACGAGCTACATGTAGGTTCCTTGGGTACCCAGATGGGAGCCATGAAACACAAACCCTCCATGGTCAGGTCTGTATTTGTTTCCTGCCTTTTTCCCAGCAATCCCCAGGCCCCAGCAGTGGTGGTCTACCTCTGCTGATTCTCATTCAGAATCTAAACTTAGAAACAATTATAACCTAGACCCCAATTCTACCTGAAAGTAACAGAATAACATAATCTATACCCTGCAGCATGACTGTTTGCCCAACGTAATGAGGATGAACTGAGAGATAATGAATCATCATGACCCTGGCCCAAGTAATGAGAATGAACTGTGAGATAAATGAATGATCATGAC-AAA s ponAbe2.chr3 42322740 580 + 202140232 TGAAGAAGTCAGTAGGGTGAAAACAAGAGCTGGCCAGAATGTCCACAGATGGTGACAAGTTTGCAAAACCTTTATTAGACTACTCATGAGGCTAACTAGAGGCCAAGGGGCCAACCCTGCCCCTGTCCTTACAGAGAGACCCTACACAGGATTCCCAGATATAGATGGAAGGATAACATCTTATCAGGTCCTCTCTGTGCAGATGTGGTTATCATTCCAAATAATGGGCTCCAGCCCCAAGCCTGTTCCATCCTCAATTGCTTTGAGTGGCCAGCGTGGGCTCTCCACACACGAGCTACATGTAGGTTCCTTGGGTACCCAGATGGGAGCCATGAAACACAAACCCTCCATGGTCAGGTCCGTATCTGTTTCCTGCCTTTTTCCCAGCAGTGCCCAGGCCTCAGCAGCAGTGGTCTACCTCTGCTGATTCTCATTCAGAACCTAAACTTAGAGACAATTAGAACCTGGACCCCAATTCTACCTGAAAGTAACAGAATAACATAATCTATACCCTGCAGCATGACTGTTTGCCCAACATAATGAGGATGAACTGTGAGATAATGAATGATCATGACCa-------------------------------------------------aaa i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3310944 629 + 6711082 TGAAGAAGTCAGTAGGGTGAAAACAAGAGCTGGCCAGAATATCCACAGGTGGTGACAAGTTGGCAAAGCCTTTACTATACTACTCGTGAGGCTAACTAGAGGCCAAGGAGCCAACACTGCCCCTGTCCTTACAGAGAGACCCTACACAGGATTCCCAGATATACATGGAAGGACAACATCTTATCAGGTCCTCCCTGTGCAGATGTGGTTATCATTCCAAATAGTGAGCTCCAGCCCCAAGACTGTTCCATCCTCAATTGCTTTGAGTGGGCAATGTAGGCTCTCCACACACGAGCTACATGTAGGTTCCTTGGGTACCCAGATGGGAGCCATGAAACACAAACCCTCCGTGGTCAGGTCTGTATTTGTTTCCTGCCTTTTTCCCAGCAATCCCCAGGCCCCAGCAGCGGTGGTCTACCTCTGCTGATTCCCATTCAGAATCTAAACTTAGAAACAATTATAACCTAGACCCCAATTCTACCTGAAAGTAACAGAATAATATAATCTATACCCTGCAGCATGACTGTTTGCCCAACGTAATGAGGATGAACTGAGAGATAATGAATCATCATGACCCTGGCCCAAGTAATGAGAATGAACTGTGAGATAAATGAATGATCATGacaaaa i panTro2.chr4_random C 0 C 0 a score=42572.000000 s hg19.chr4_gl000194_random 97658 158 + 191469 AAC--CCCActacaacccaacaacaaaataaagtgattaaaaaatggacaaacaacatttatccaaagatgcaaagatgatatacaaatagccaagagatacatgag-------------------------atatatgagaagatgtgtaacatcactagtcattagagaaatgcaaaaagaaa s panTro2.chr4_random 3311573 158 + 6711082 aac--cccgctacaacccaacaacaaaataaagtgattaaaaaatggacaaacaacatttatccaaagatgcaaagatgatatacaaatagccaacagatacatgag-------------------------atatatgagaagatgtgtaacatcactagtcattagagaaatgcaaaaagaaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42323320 158 + 202140232 aac--cctgctacaacccaacaacaaaataaagtgattaaaaagtggacaaagaacatttatccaaagatgcaaagatgatatacaaatagccaacagatacatgag-------------------------atatatgagaagatgtgtaacatcactaatcattagagaaacgcaaatagaaa i ponAbe2.chr3 C 0 C 0 s tarSyr1.scaffold_28056 2572 154 - 19921 AATgacttattctaaaactacattgacacagtgtgat------atgggctcaca------------------------ggtatacaagtagaccagtgaaacataagagaaagtccagaaacatacctacatatacatggtaaagtgattaacgtta-tagatgacagtgaattataataagaaa i tarSyr1.scaffold_28056 N 0 N 0 a score=176902.000000 s hg19.chr4_gl000194_random 97816 766 + 191469 ccacaatgggacatcacttcaaacccaacagaaagtaacaagcgcaggtgaaactgaaacccttgaacactgttggtggaaatatgaactggctcctcaaaaaaaaaataaaataaaatgaccatatgatccagccatccaactactac--agagacagaataactagtagcaggacctcaaacagatatgtgcacacctaagttcacagcagcattacacagccacaaggtggaagaaaccaaaacgtccatccagaaataggtggataaacaaaagcatatatatacatgatatatattatatatatattatat-------------------------------atgtaatatatatataatatatatatgaagaaatattattcagccatagaaaggaagaaaattgtgacacatctgacacataacatggaacctacttacaaaacaacaaatattatataaccctagggatataagccaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaggagggggaaattaatagttgttgaatgggtatagagttttccaaga-taaaaaaaaatctagaaatctgctacacaacactgtaaatattcttaactctacaaaactgtatacttac-aactggttacgatggtaaattttaaggtatgtgtttgttaccaaaattctaaataataaatTATTTATaaaaaatgatcttttttgacacagggtcttactctgttgccctggcaggagtgcaatggcatgatcacagctcattgcagcct s panTro2.chr4_random 3311731 794 + 6711082 ccacaatgggacatcacttcaaacccaacagaaagtaacaagcgcaggtgaaactgaaacccttgaacactgttggtggaaatatgaactggctcctcaaaaaata---aaaataaaatgaccatatgatccatccatccaactactac--agagacagaataactagtagcaggacctcaaacagatatgtgcacacctaagttcacagcagcattacacagccacaaggtggaagaaaccaaaacgtccgtccaggaatatgtggataaacaaaagcatatatatatatgatatatattatatatatattatatatattatatataatgtatgtatataatatacatgttatatatatataatatatatatgaagaaatattattcagccatagaaaggaagaaaatcgtgacacatctgacacataacatggaacctatttacaaaacaacaaatattatataaccctaggtatataagccaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaggagggggaaattaaaagttgttgaatgggtatagagttttccaaga-taaaaaaaaatctagaaatctgctacacaacaccgtaaatattcttaactctacaaaactgtatacttacaaactggttacgacggtaaattttaaggtatgtgtttgttaccaaaatTCtaaataataaattatttataaaaaatGAtcttttttgacacagggtcttactctgttgccctggcaggagtgcaatggca-gatcacagctcattgcagcct i panTro2.chr4_random C 0 I 3981 s ponAbe2.chr3 42323478 714 + 202140232 ccacaatgggacatcacttcaaacccaacagaaagtaatgagtgcaggtgaaactgaaacccttgtacactgttggtggaaatatgaactggctcctcaaaaaaaa-ataaaataaaatgaccatgtgatccagcaatccaacttctacagagagacagaataactagtagcaggacctcaaacagatatatgcacacctatgttcacagcagcattacacagccataaggtggaagaaacaaaaacgtctatccaggaatggatggataaatgaaaggat----------------------------------------------------------------------------------atatatatacaaagaaatattattcagccatagaaaggaagaaaatcctgacacatctgacacacaacatggaacctacttacaaaacgacaaatattatataactccaggtatataagtcaaatttttagaaacacaaagtagaatagtacttgccaggaggtgaaagga-ggggaaattaatagttgttgaatgcgtatagagttttccaagattaaaaaaaaatc--gatatctgctacacaacactgtcaatattcttaactctacaaaactgtatacttac-aactggttatgacggtaaattttaaggtacgtgtttgtcaccaaaatttgaaaTAGTAAATTATTTATAAAAAATGAttttttttgacacagggtcttactctgttgccctggcaggagtgcaatggcatgatcacagctcactgcagcct i ponAbe2.chr3 C 0 C 0 a score=19912.000000 s hg19.chr4_gl000194_random 98582 236 + 191469 caacctcccaggctcaagcaaccctcccacctcagcctcccgaatagttgggactacaggtgcacaccaagatgtcaggctaaattttggtttagtttttttgtagagagggttttgccatgatgcccaggctggtctcaatctcctgggctcaagcaatccacctcccttggactcccacagagctgagattacgagcataagccaccatgcccagcctataaaaaattatttca s ponAbe2.chr3 42324192 236 + 202140232 caacctcccaggctcaagcaaccctcccacctcagcctcccgaatagttgtgactacagatgcacaccacgatgtcaggctaatttttggtttggtttttttgtagacagggttttgccatgttgcccaggctgatctcaacctcctgggctcaaccaatccacctgccttggcctcccacagagctgagattacaagcatgagccaccatgctcagccTATAAAAAATTATTTCA i ponAbe2.chr3 C 0 M 268 e panTro2.chr4_random 3312525 3981 + 6711082 I a score=0.000000 s hg19.chr4_gl000194_random 98818 24 + 191469 aaaagccaaaatattaatcaaact e panTro2.chr4_random 3312525 3981 + 6711082 I e ponAbe2.chr3 42324428 268 + 202140232 M a score=126675.000000 s hg19.chr4_gl000194_random 98842 1534 + 191469 ggaatatttagaaatatttaa----cccaaaagaagttaggaaagaatatatagaagatcaaaacacagatgaaggccagacatggtggctcatgcctgtaatccaaacactttgggaggccaaggtgggtagattgcttgagctcaggagttcaagaccagcctgtgcaacatggcaaaaccctatctctacaaaaaatataaaaattagccaggtgtgtttccatgcgcctgtagtcccagctactcag----------tgaggattggttgggcctgggaggcagaggttgcagtgagccaacattgcaccattgcactacagtctcggtgacagagcaagaccctgtcttaaaaaaaaaaa--aaaaaaatagaaaataagtagaaaaatggcagacctaaatccaaccttagcaatgattagttacaatgtaactggacaaatactctacttaagacagagactgccagacctgagaggaaagcaagacccaacaatatggcatccacagagacacaatttaaatacagagacacaaaatatgagaaaaaatatgctttgcagacactaatcataaaaatatgctatccagacactaatcataaaaagcttcaacggagatgttaacactagatgaaagaggctccagaacaaaatatatcaccagaaataaacaaggtaatttcataaaaataaaagaatcagagaggatgatgttacaattataaattgtgcctcaaagtgcacacaaagtactcacacacacagagcctcaaattatgtgaatcaaaaacaacagaacaaaagcaggaaattgacaatccaaaattatagctggtgaattaatactgctctctcagtaactgatggaacaaccagataaaaatataggaaaaatacggatctaaatgacaaaatcctgacccaaatggtacttg----------------gcagtaccaagatagactgtatgtcgatcaattgagaaaatgttcaagcatgacatagtatacaaagtatgttgtctgaacacctgaaattaaattagaaaccaacaacaaattgatatccagaaaagcctcaaatgtctgaaaaccaagtaataaactttgaaataccctgggagtcaaaaaa----gtattcacaaggggaactggaatgtatttggaacaaacttgttataaaaatcatatTTCtggtagactaaaggtgacaacttctttcctgctcctctctctgtgagaaccaattccccttaaaccttgcccagactactaacttgcttggccaacagaaggtgacaaaggtggtatttggggacttcagaagccaggCTGAGAAAACAGAACACTTATCCAGGAGAAAGCCAGTCACCAGGCAGGAAATCCCACTCCCCTGAGACCCCATGATGGAAACCACATGGCCAGTCCATGACTAGCTACATGCATTGACATCCCCCACTGACCCTCCAGCAACACCGACTCCCAACCACTAGTGagccttcagcaacatccactcccaaccactagtgagccaccctgcacaccaccccactgtgctt s ponAbe2.chr3 42324703 1562 + 202140232 ggaatatttaaaaatatttaattaacccaaaagaagttgggaaagaatatatagaagatcaaaagaca----aaggccaggcatggtggctcacacctgtaatcccaacactttgggaggccaaggtgggtagattgcttgagctcaggagttcaagaccagcctctgcaacatggcaaaaccctatctctacaaaaaatataaaaattagccaggtgtggtgccatgcacctgtagtcccagctactcagggggctgaagtgaggattggttgggcctgggaggcagaggttgcagtgagccaagattgcaccattgcactacagtctgggtgacagagcaagaccctgtcttaaaaaagaaaattaaacaaacagaaaataagtagaaaaatggcagacctaaatccaaccttagtaatgattagttacaatgtaactggacaaatactctacttaagacagagactgccagacctgagaggaaagcaagacccaacaatatggcatccacagagacacaatttaaacacaaagacacaaagtatgagaaaaaatatgctatgcagacactaatcataaaaatatgctatccagacactaatcacaaaaagcatcaacggagatgttaacactagatgaaagaggcttcagaacaaaatatatcaccagaaataaaca-ggtactttcataaatataaaagaatcagagaggatgatattacagttataaattgtgcctcaaagtgctcataaagtacacacacacacagagcctcaaagtacgtgaatcaaaaacaacagaacaaaagcaggaaattgacaatccacaattatagctggtgaattaatactgctctctcagtaactgatggaacaaccagataaaaaaataggaaaaatacggatctaaatgacaaaatcctgacccaaatggtatttatgaagcacacagttgagcactaccaagacagactgtatgtccatctattgagaaaaggttcaagcctgaaatagtataaaagata-gttgtctgaacacttgacattaaattagaaaccaacaacaaatagatatccagaaaaggctcaaatgtctgaaaaccaaataataaactttgaaataccctgtgagtcaaaaaaaaaagtattcacaaggggaactggaacatatttggaACAAACTTGTTATAAAAATCACATTTCtggtagactaaatgtgacaacttctttcctgctcctctctctgtcagaaccaattccccttgaaccttgcctagactactgacttatttggccaacagaaggtgacaaaggtggtatttggggacttcagaagccaggctgagagaacggaacacttatccaggagaaagccagtcaccaggcaggaaatccccctcccctgggaccccatgatggaaaccacacggccagtccatgactagctacacacattgacagcccccactgagcctccagcaacacc--ctccaaaccactagtgagcctccagcaacgcccgctcccaaccactagtgagccaccctgcacaccaccccgctgtgctt i ponAbe2.chr3 M 268 C 0 e panTro2.chr4_random 3312525 3981 + 6711082 I a score=143990.000000 s hg19.chr4_gl000194_random 100376 583 + 191469 tcacacaacccagcttg-----------gctgcaactgtgtgtgagatgagctggccaccaagact-ctctaagccaaaaaac--aagtaataatgagttgttttaagctgccaagttttggggatggtttcttcagaatagataactggaa-caGAATAtggtagctggaaatgagccgctgtggtaatcagaagctacaatatgtgccacgactgtgaggctgacctgtaactgggcctcaaggaga-----ccattcattcaacctggaagggcatcaagactcttggtcagggcctgaaggacggtgagaaaatgtcattggaaactggggaaaaggcctgagagttatgtgctgagggactgtgagaaaactatggccacaacatggaaactgaaagggcactgcaccatctcagggatctgcctaaggagacatctgggaagaacatggaaagtgctaccagcctaccctaactgtcattgaataaatatgacaggagagggacatgatctaaagaaggaagttcagttttcaaacaaaatttagagaaaatataaagaaATAATTTCTTGTCTCAAAAGGCCaaag---aaaaaaaaaa s panTro2.chr4_random 3316506 584 + 6711082 TCACACAATCCAGTTTG-----------GCTGCAATTGGGTGTgagatgagctggccaccaagacttcttaaagcaaaaaaac--aagtaataatgagttgttttaagctgccaagttttggggatggtttcttcagaatagataactggaaACAGAATATGGTAGCTGGAAATGAGCCGCTGTGGTAATCAGAAGCTACAATATTTGCCACGACTGTGAAGCTGACATGTAACTGGGCCTCaaggaga-----ccattcatgcaacctggaagggcatcaagactcttggtcagggcctgaaggacggtgagaaaatgtcattggaaactggagaaaagacctgagagttatgtgctgagggactgtgggaaaactacggccacaacatggaaactgaaagggcactgcaccatctcagggatctgcctaaggagacatctgggaagaacatggaaagtgctaccagcctaccctaactgtcactgaataaatatgacaggagagggacatgatctaaagaaggaagttcagttttcaaacaaaatttacagaaaatataaagaaATAATTTCTTGTCTCAAAAGGCCaaag---aaaagaaaa- i panTro2.chr4_random I 3981 I 1410 s ponAbe2.chr3 42326265 603 + 202140232 tcacacaatccagctcagctgctgccctgctgcaactgtgtgtgagacaagctggccaccaagact-ctctaagccaaaaaacaaaagtaataatgagttgctttaagctgccaagttttggggatggtttcttcaaaatagataactggaa-caGAATACGGCAGCTGGAAATGAGCCGCTGTGGT-ATCAGAAGCTACAACATGTGCCACGACTGTGAGGCTGAGCTGTAACTGGGCCTCAAGGAGACCATTCCATTCACGCaagctggaagggcatcaagactcttggtgagggcctgaaggacagtgagaaaatgtcattggaaactggagaaaaggcctgggaattacgtgcggagggactgtgggaaaactacagccacagcatggaaactgaaagggcactgcatcatctcagggatctgcctaaggagacatctgggaagaatgtggaaagtgctaccagcctcccctaactgtcactgaataaatatgacaggagagggacatgatctaaagaaggaggttcagttttcaaacagaatttagagaaaatataaagaaATAATTTCTTGTCTCAAAAGATCAAAGTCAAAAAAAAAAA i ponAbe2.chr3 C 0 C 0 a score=46982.000000 s hg19.chr4_gl000194_random 100959 180 + 191469 gaaaaggaaaaaaaattaaaaagaaGCCATTGAATACCCTATTGACCATAAGAAAAAGGCAGAGAAAGTTGGTCAACGGCAACCCAGGCACTGAAGGAAAAAGAAAATGGAGAATGACAAAAGCCCAGAGGGAGGAGTAAAAGGACACAAACGCCGTTCTCAGGGACAAGGACTGGGCGC s ponAbe2.chr3 42326868 179 + 202140232 -GAAAAGGAAAaaaatgaaaaagaagccattgaataccccattgaccataagaaaaaggcagagaaagttggtcaacggcaacccaggcactgaaggaaaaagaacatggagaatgacaaaagcccagagggaggagtaaaaaggcacaaacaccgttctcagggaccaggactggacat i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3318500 180 + 6711082 gaaaaggaaaaaaaaTTAAAAAGAAGCCATTGAATACCCTATTGACCATAAGAAAAAGGCAGAGAAAGTTGGTCAACGGCAACCCAGGCACTGAAGGAAAAAGAACATGGAGAATGACAAAAGCCCAGAGGGAGGAGTAAAAGGACACAAACGCTGTTCTCAGGGACAAGGACTGGGCGC i panTro2.chr4_random I 1410 C 0 a score=51996.000000 s hg19.chr4_gl000194_random 101139 169 + 191469 CGTTCTCAGGGACCCGGACTGGGCACTAATCACAGAACTGTAACAGGCGCCCCATGGGAATGACCAACTG-TTAGACG-GGGCCTGCAGGGCAGCACCTCCCTCCTGCCTCCCACCAACAGCTTCTAAAGGGAAAT-GCCGACTGTTTTCACACCAGTCCCCTCACTGCGGC s panTro2.chr4_random 3318680 169 + 6711082 CGTTCTCAGGGACCCGGACTGGGCACTAATCACAGAACTGTAACAGGCGCCCCATGGGAATGACCAACTG-TTAGACG-GGGCCTGTAGGGCAGCATCTCCCTCCTGCCTTCCACCAATAGCTTCTAAAGGGAAAT-GCCGACTGTTTTCACAGCAGTCCGCTCACTGCGGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42327047 169 + 202140232 cattctcagggaccaggactgggcactaatcagagaacTGCAACAGGTGCCCCATGGGAATGACCAACTG-TTAGACG-GTGCCTGCAGGGCAGCACCTACCTCCTGCCTCCCCCCAACCCCGTCTAAAGAGAAAT-GCCGACTGTTTTCACACCAGTCCCCACACTGCGGC i ponAbe2.chr3 C 0 C 0 s speTri1.scaffold_86749 7993 146 + 13311 CATTCCCAGGGACCAGCAT---AACCTAATCAAAGAACTGGAGCAGGTGCCCAAC----ATGAACAACTGCTCAGACGAGTGCCTACAGGG-------TGCCTCCTGCATCCCACCA--CGCAGCTGCAGAGAAGTGGTCCACCATGTTCATGCTACTCTCT---------- i speTri1.scaffold_86749 N 0 C 0 a score=4197.000000 s hg19.chr4_gl000194_random 101308 117 + 191469 TGAGTGTGTGGGCACAGATGATAGGTCACAGCAACCTGATTCAGTCCTTACTGTGGCTGAGTGCGTCAGGGGCAGATGACAGGCCACCACAACCTGATTCAGTCCTCACTGTGGCTG s panTro2.chr4_random 3318849 117 + 6711082 TGAGTGTGCAGGCTCAGATGATAGGTCACAACAACCTGATTCAGTCCTCACTGTGGCTGAGTGCGTCAGGGGCAGATGACATGCCACCACAACCTGATTCAGTCCTCACTGTGGCTG i panTro2.chr4_random C 0 C 0 s speTri1.scaffold_86749 8139 12 + 13311 --------------------ATAGGTGGCAAG------------------------------------------------------------------------------------- i speTri1.scaffold_86749 C 0 C 0 e ponAbe2.chr3 42327216 0 + 202140232 C a score=15086.000000 s hg19.chr4_gl000194_random 101425 39 + 191469 TGTGTGGGGGGGCAGATGACATGCCACCACAATTTGATT s panTro2.chr4_random 3318966 39 + 6711082 TGTGTGGGGGGGCAGATGACAGGCCACCACAACTTGATT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42327216 39 + 202140232 TGTGTGGGAGTGCAGATGACAAGCCAGCACAACCTGATT i ponAbe2.chr3 C 0 C 0 s speTri1.scaffold_86749 8151 39 + 13311 TATGTGAAAGGGCAGATGGTAGGCAACCAGGATCTGATT i speTri1.scaffold_86749 C 0 I 26 a score=210941.000000 s hg19.chr4_gl000194_random 101464 847 + 191469 CAGTCCTCACTGCGGCTGAGTGTGTGTGGGCGCAGGTGACAGGCcaccacaacctgaatcaggattcagttgggctaccagccagtgccataaggaaaaccattctgggactcttgagaggggcaaagaataatttgcatgtgagagaaacgttaatagtttgtggccagaggacaaactgtggtttattaaagactgctgcaggttcctactatgcttctcatcaagaggtggaatctaatcaccttccccccttgaatcatgtctggtctcagtgatgagtatgactggacagtgtggcaggagagatgctctgggacttctgagggatgatcatgagagaccttacagcttctgcctgggcctcttggacacacaccctgggagaagccagacaaacctgactacctgacactgccagactgggaggaagtccgtgctggccacaaagagagggctcggtgcctgctccatgtccccagccactagagtccttctgggtgcctgcttcacgtccccagccactagagtcctcccagatgagaccagggacatcatgaagcagccaacccacattgccctgtccagtgtcttgacccagaaaattgtgacatgtaaaaagaataaattcctggtttaagccagtaaggttactggtacattgttacattgcagataattaaaacCTTGAAAAACTCATGAGAGATCCCAAGTAAAACCTTGATCTGAAACATGGCATGTGGCGATTTATATTGAGTATTAGGTTAAAAATGCAAGAATGGAGCATAGTTAATATTTTACGTTAAAGCTAAAACTATAATTGCCCACTTAAAATTTTCAGTTTATT s ponAbe2.chr3 42327255 807 + 202140232 CAGTTCTCACTGCGGCTGAGTGTGTCGGGGGGCAGATGACAGGCCACCACAacctgattcaggattcagttgggcttccagtcagtgccataaggaaaaccattctggggctcttgagaggggcaaagcatattttgcatgtgggagaaatgttagtagtttgtggccagaggacaagctgcggtttattaaagactgctgcagattcctactatgcttctcatcaagaggtggaatctaatcatcttccccccttgaatcgtggctggtctcaatgatgagtacgactggacagtgtggtaggagagatgctctgggacttctgaggggcgatcatgagaggccttacagcttctgcctgggcctcttggacacacaccctgggagaagccagacaaacctgactacctgatgctgccagactgggaggaagtccgtgctggccacaaagagaggg---------------------------------------ctgggtgcctgctccacatccccagccactagagtccttccagatgagaccagagacatcatgaagcagccaacccacactgccccatccagtgtcttgacccagaaaattgtgacatgtaaaaagaataaattcctggtttaagccag-aaggttactggtacactgttacatcgcagataattaaaacCTTGAAAAACTCATGAGAGATCACAAGTAGAACCTTGATCTGAAATATGGCATGTGGAGATTTATATTGAGTATTAGGTTAAAAATGCAAGAATGGAGCATAATTAATATTTTATGTTAAAGCTAAAACCATAATTGTCTACTTAAAATTTTCAGTTAATT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3319005 841 + 6711082 CAGTCCTCACTGCGGCTGAGTGTGTGTGGGTGCAGATGACAGGCCACCACAacctgattcaggattcagttgggctaccagccagtgccataaggaaaaccattttgggactcttgagaggggcaaagcataatttgcatgtgggagaaacgttaatagtttgtggacagaggacaacctgtggtttattaaagactgctgcaggttcctactatgcttctcatcaagaggtggaatctaatcaccttccccccttgaatcatggctggtctcagtgatgagtacgactggacagtgtggaaggagagatgctctgggacttctgagggatgatcatgagagaccttacagcttctgcctgggcctcttggacacacgccctgggagaagccagacaaacctgactacctgacactgccagactgggaggaagtccgtgctggccacaaagagagggctcggtgcctgctccatgtccccagccactagagtccttctgggtgcctgcttcacgtccccagccactagagtccttccagatgagaccagggacatcatgaagcagccaacccacaccgccttgtccagtgtcttgacccagaaaattgtgacatgtaaaaagaataaattcctggtttaagccagtaaggttactggtacattgttacattgcagataattaaaacCGTGAAAAACTCATGAGAGATCACAAGTAAAACCTTGATCTGAAACATGGCATGTGGTG------ATTGAGTATTAGGTCAAAAATGCAAGAATGGAGCATAGTTAATACTTTACGTTAAAGCTAAAACTATAATTGCCCACTTAAAATTTTCAGTTAATT i panTro2.chr4_random C 0 C 0 e speTri1.scaffold_86749 8190 26 + 13311 I a score=17787.000000 s hg19.chr4_gl000194_random 102311 65 + 191469 AGGTTGTCACTTTTTGTTCTTAGCCAAGAAATCAACT--AGTTTTAGTCCATAAACAGTTGGAACTG s speTri1.scaffold_86749 8216 50 + 13311 AGGTGGTCATTCTTTGTTCTTAACC---AACTTAA----AATTCTAGTCCATAAACA---------- i speTri1.scaffold_86749 I 26 C 0 s ponAbe2.chr3 42328062 63 + 202140232 AGGTTGTCACTTTTTGTTCTTAACCAAGAAATCAACTAGAGTTTTAGTCCATAAACA----GAACTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3319846 65 + 6711082 AGGTCGTCACTTTTTGTTCTTAACCAAGAAATCAACT--AGTTTTAGTCCATAAACAGTTGGAACTG i panTro2.chr4_random C 0 C 0 s turTru1.scaffold_116336 44335 44 - 166387 ---------------------AGCCAACAATTAGGAG--AGTTCTGCCCCAGTCATAGCTATGAATA i turTru1.scaffold_116336 N 0 C 0 a score=27205.000000 s hg19.chr4_gl000194_random 102376 63 + 191469 ATGCACACATCCGTTTTTCCTTACTC--ATTTTAAGCAGCTATCTGAAAT---AGG--AAGCATAATATA s panTro2.chr4_random 3319911 63 + 6711082 ATGCACACATCCGTTTTTCCTTACTC--ATTTTAAGCAGCTATCTGAAAT---AGG--AAGCGTAACATA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42328125 63 + 202140232 ATGCACACATCCATTTTTCCTTACTC--ATTTTAAGCGGCTATCTGAAAT---AGG--AAGTGTAATATA i ponAbe2.chr3 C 0 C 0 s speTri1.scaffold_86749 8266 59 + 13311 -TGTAAATATCTATCTTTTCCTGCTC-ATTTTTAACTAGTTACCTGAAAT---AGA--AGAATTAG---- i speTri1.scaffold_86749 C 0 I 3850 s ochPri2.scaffold_3721 47475 63 - 150944 ACACAAACAACAAATGTTTCTTAAACTAGTTTTTATTAATCAACTGGAAT---AAACTAAAATCTA---- i ochPri2.scaffold_3721 N 0 C 0 s turTru1.scaffold_116336 44379 63 - 166387 ATGCACACATGCACTTCTCCCTATTC-ATTTTTAAGTGATTAACTGAAATAGCAGA--AGAATTCA---- i turTru1.scaffold_116336 C 0 I 959 a score=25291.000000 s hg19.chr4_gl000194_random 102439 96 + 191469 ------ATCTTTAAAGAATCTGAAAATATGACAGAAATGTTTAAACTATAAACATAT-ATTGTAAATGTTAGCATATTATATACATTGCATATTAACATAAGC s ochPri2.scaffold_3721 47538 80 - 150944 AACAGCATTTTT-AGGAGTGTGAAAACATGACAAATCACTGACAGCGGGAAGCATACAACTGTGAAT--------------TA--------ATCAACACAACT i ochPri2.scaffold_3721 C 0 N 0 s ponAbe2.chr3 42328188 96 + 202140232 ------ATCTTTAAAGAATCTGAAAACATGACAGAAATGTTTAAACCACAAACATAT-ATTGTATATGTTAGCATATTGTATACATTGCATATTAACATAAGC i ponAbe2.chr3 C 0 I 4 s panTro2.chr4_random 3319974 96 + 6711082 ------ATGTTTAAAGAATCTGAAAATATGACAGAAATGTTTAAACTATAAACATAT-ATTGTAAATGTTAGCATATTGTATACATTGCATATTAACATAAGC i panTro2.chr4_random C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=99142.000000 s hg19.chr4_gl000194_random 102535 338 + 191469 TAAAATCATTGACATAAATTTATATAAA-AAAAGGTAGAAAATATGACAATG--TTCTTCTTGTTTTTTGTCTTTGCATATTTCTT---TATTGGCCCTTGTCAAATGTGACCCACTAACTCCTGAATGCTTTCTCTCTCCCCATGGATTCCTAAGGATGTCACCACT-GTGCTGGCCAGATGCAGAGATCACAGGTGACTGAACCTCATCACCCCACAAACACACCCTTCAGGTTTTGCCAAGAATGACACTGTAAATATAACAAAGCTTCTGTGCTTGTTAGTGAACACCAACTCA------GCTTCTCTC-CTGTATTCGGAAATCAGGATGAGATGAAAACAACAAGC s ochPri2.scaffold_5451 106857 297 - 130419 TAGGATCATCAGTATAAATATATATGACTAAAAGGTACACATTATTAAAATACCTGCATCTTATTTTTGCTCTGTGCATTAGTGCTGCATATTAACCCTTGTTCAACAAGTCTCAGTGATTTCTGAATGGCTTCTCT--------------------------------GTGCAG---AGAAGC-CTGGCTTCGAGGGACTGGACCTCACCCTGGAATAAACCCATCCTCCAGGCTTTAGGAACAGTGACATTTCTGATGCAGCA-------------------TCAACAGCGGCTCCCTGTGTACTGCTGACACTGTATGCAAACACCAGAATAAAAGGAGAAACACAAAC i ochPri2.scaffold_5451 N 0 I 204 s ponAbe2.chr3 42328288 339 + 202140232 TAGAATCACTGACATAAATTTATATAAACAAAAGGTACAAAATATGACAATT--TGCTTCTTG-TTTTTGTCCTTACATATTTCTT---TATTGGCCCTTGTCAAACATGTCCCACTAACTCCTGAATGCTTTCGCTCTCCCCATGGATTCCTAAGGATGTCACCACACATGCTGGCCAGATGCACAGGTCACAGAGGACTGAACCTCATCACCCCACAAACACACCCTTCAGGTTTTGCCAAGAATGACAACGTGAATGTAACAAAGCTCCTGTGCTTGTTAGTGAACACCAACTCA------GCTACTCTC-CTGTATTTGAACATCAGGATGAAATGAAAAGAACAAGC i ponAbe2.chr3 I 4 C 0 s panTro2.chr4_random 3320070 339 + 6711082 TAGAATCATTGACATAAATTTATATAAACAAAAGGTAGAAAATATGACAATG--TTCTTCTTGTTTTTTGTCTTTGCATATTTCTT---TATTGGCCCTTGTCAAACGTGACCCACTAACTCCTGAATGCTTTCTCTCTCCCCATGGATTCCTAAGGATGTCACCACA-GTGCTGGTCAGATGCACAGGTCACAGGTGACTGAACCTCATCACCCCACAAACACACCCTTCAGGTTTTGCCAAGAATGACACTGTAAATATAACAAAGCTTCTGTGCTTGTTAGTGAACACCAACTCA------GCTTCTCTC-CTGTATTCGGAAATCAGGATGAGATGAAAACAACAAGC i panTro2.chr4_random C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=103276.000000 s hg19.chr4_gl000194_random 102873 412 + 191469 Aggccaggcacggtggctcacgtctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcgggagttcgagaccaccctgatcaaaacagagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcacatgcctgtaataccagctactcagg-agctgaggcaggagaattgcttgaacccaggaggtggaggctgcagtgagctgagatcacaccactgcgctctagcctgggcaacaagagcgaaactctgtctcaaaagaaaaaaaa-taaaaataaaagaaCAAGGAAACAAAAGTAACAAGGCTTGACACCACATGAGCCTGAATGTAAGCAAGAAAAGCCCAGAAGAAATCCCATTTTGGGTCACTGGCTGCATGGTAGTAA s panTro2.chr4_random 3320409 412 + 6711082 Agaccaggcacggtggctcaggcctgtaatcccagcactttgggatgccgaggcgggtggatcacctgaggtcgggagttcgagaccaccctgatcaaaacagagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcaaatgcctgtaataccagctactcagg-agctgaggcaggagaattgcttgaacccaggaggtggaggctgcagtgagctgagatcacaccactgtgctctagcctgggcaacaagagcaaaactctgtctcaaaagaaaaaaaa-taaaaataaaagaacaaGGAAACAAAAGTAACAAGGCTTGACACCAGATGAGCCTGAATCTAAGCAAGAAAAGCCCAGAAGAAATCCCATTTTGGGTAACTGGCTTCATGGTAGTAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42328627 414 + 202140232 AggccgggcacagtggttcatgcctgtaatcccagcactttgggaagctgaggcggggagatcacctgaggtcgggagttcgagaccaccctgaccaacacggagaaaccccatctctactaaaaatacaaaattagccaggcgtggtggcacatgcctgtaatcccagctactcaggaagctgaggcaggagaatcgcttgaacccaggaagcggaggctgcggtgagctgagatcgcaccactgcattccagcctgggcaacgagagcgcaactctgtctcaaaagaaaaaaaattaaaaataaaagaaCAAGCAAACAAAAGTAACAGGACTTGACACCAGATTAGCCTGGATCTAAGCAAGAAAAGCCCAGAAGAAATCCTATTTTGGGTCACTGGCTGCAAAGTAGTAA i ponAbe2.chr3 C 0 C 0 e ochPri2.scaffold_5451 107154 204 - 130419 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=92923.000000 s hg19.chr4_gl000194_random 103285 265 + 191469 TGCCATACACATAAGGGAAGAGAAGAGGATGTGGCTTTCACTTCAAATTTTTTGAGCTTAAGGTAAA-TTTGGATAGCTACAAAGAA-GCATTCAACAGAGAGTTAAACCTATGA--TGGAAAGACTG--AAGAGGTCCAAGCTGTAGAGAAACAGGACTG-CAAACCACAAAGGGCTGAATCAGTCAAGGAGAACTGCAGGGCAAGATGAACAGGGACCA--GTGGAACATTTGGATAAGCTGTTGAGAAGAAAGGAGAATTCAGAGACAAA-G s panTro2.chr4_random 3320821 265 + 6711082 TGCCATACACATAAGGGAAGAGAAGAGGATGTGGCTTTCACTTCGAATTTTTTGAGCTTAAGGTAAA-TTTGGATAGCTACAAAGAA-GCATTCAACAGAGAGTTAAACCTATGA--TGGAAAGACTG--AAGAGGTCCAAGCTGTAGAGAAACAGGACTG-CAAACCACAAAGGGCTCAATCAGTCAAGGAGAACTGCAGGGTGAGATGAATAGGGACCA--ATGGAACATTTGGATAAGCTGTTGAGAAGAAAGGAGAATTCAGAGAAAAA-G i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42329041 267 + 202140232 TACCATACAAATAAGGGAAGAgaggaggatgtggctttcactttgaattttttgagtttaaggtaacttttggatagctacaaagaa-gcattcaacagacagttaaacctacga--tggaaagactg--aagaggtccaagctgtagaGAAACAGGACTG-CAAACCACAAAGGGCTGAATCAGTCAAGGAGAACTGCAGGGTGGGATGAACAGGGACCG--ATGGAACATTTGGATAAGCTGTTGAGAAGAAAGGAGAATTCAGAGAAAAAGG i ponAbe2.chr3 C 0 C 0 s ochPri2.scaffold_5451 107358 268 - 130419 TGTAACACCTGCAAGGGATAAGAGGAGGATACAATTTTCATTTCCCATTTGTTAAGCTTCAGAAATCTTTTGGATAGCTACGAAAAACTTACCTAACAGGGAATGAAGTCTATGATCTTAAAAGGCAGAAAAGAGGGACCAGCTG----GAAACTGGGGTGTCAAACCACAAAAAGTTGAGCCAGTCCGGGAGGACTGCAGAATGAGAAGGATGGGAGCCAGGGTGGAACACCGGGATGAGCTAC--AGGAAGCAGGAGAGAGCAGACACAGG-G i ochPri2.scaffold_5451 I 204 N 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=709698.000000 s hg19.chr4_gl000194_random 103550 2803 + 191469 AACTGTCAGTGAGGTCATAATAGGAACtgttacagtgaactaaatatggcctgggaaggactctgtacttctagatttgagtccctgtggacaaagtgcaacctaacttaataggtagaaagactgaaaacctaacttaggagtatgtgcctaaaacagtagctgagtcctggccaatcccaacagccaaacttctgccactcacacactgctgagtgttcagttgtgttcaaataaggcaaatgctgagcactgtaaccagtccagttgtttctggacctcactgctgagaactgtaatggacccagttgcttctagacctcact---------------------------------------------------------------------------cctcacttcagatttttgtacaacatgttccctttattgtctataaatcttccaccatgtgtctgtgctggagtctcactgaatctgctgtgattctgggggctgcctgattcgtgaatcattcattgctcaattaagttcctttaaatttaattcagctgaagattttcttttaataGATGGTGTCAGAAGTGGGATCTGTGGGAGCAGGACTGCTAGGGCCTCTGGAGCTATACTGTGGTGAGCAGTGTTGCTAAGGCTTCTAATGACCCCC-AGAGTGCTGAGGTACAAGGAAGGAACCTGAAAGGACCCGTTTGtgatggcagcagtggcccacgtggagcagttgctatggagacactggctgcagtggggaggagtggctggggctgtgcactcctcaaagctggtgggagccaggaatgggtgggagacctgccccttctaaattatcaggcaggagccccgccctcccaggcacagctgcagccatccagccatgactgcaaacccgggcatctctgcactctcagaggcccagcaagcccccctgcccc-gcaggctcagttgtacctggtcctgccacctggcgtctctctgcttccagagcccactccaaattcggatccaagttgaggccaaacccgggcacagtcacaacccggcccagtttgtgcaagctcagggcagtgctgacatgccagcccactgccacctcggccccctccagactttgggcactggcaagcacaggagggaggctgaggtggggctaagagtggctcagcagtggccggaaggccctcctcatctcaaac-gcctgggcactatgggcacagctacccaccatgcgtctcctctcagctgctgagagctgaacagacgttgggatgacctgcctgaagaaaggagctacccactgcaggtctcctctgagctgtactggggctcaataaagcacctcttcaccttgttcaccttctacttgtccacatacctcatttttcctggactcaggacaagaactcgggacctgccaactagcagggctgaaagaggtgtaacataaacagg-------gctgaaacgtgctccttgcttgccaaattgcaggcaagaagaagagaagagagaaggagagaagagctgtgtcccttcagggaacacagacctaggagctcccccagccagggctgtgacaccttctttggggctctgcaggtcctgcatctccaagcttctgggtgccactgcattccctgatacccacagtggaagctgtttgcagtcggcctggtccagctgcagcctcacagggagctggcatct------gtgcctggagctgcccaccccactgcagctggcatgcttggctgtgtgcagtggccagatcccatgctcgcttgctcacacacccctcactgctctgtacccagctcgcccttggcaggtgtgggatccagaccactagcatgagctgagtggacagaactaacccagtgggcccaagcaaaacacaggtaaaggctccaccagccagaggtttcagtcagaaaagtgacacctcaggattctgtaacacttgtgtcctttgatctcttggagcagctggggatcatggtaaattttctctcggatttcagagctccatggatttgtgttttgagctctgagtttctttgagcaaatttctgttccaaactgctatccagccatgactggctggatgttttagaagttatgacagaaaagggactgggtccaggatcagatttgatccagtagttaactggcttgaatccagttccagttagaggcctcctacatctgactgggtcagaaggaaagtggtagtaaatgataatattgga-aggttgtaacatttggcttttgaaaattcacagggatttttgtgttctacccctttgtttcatttttctcgcatgcttaggcagg--aaaaaaaatcattggctaagttaatgaagggaacctgggagtaaagccaatattttaggtaaaaataggatccttaatttctggaaaactaagctccttctggctaatacattaggcctgggaagcagcaaagtcttacagaaatggcaaaatcttatt-aagataacttacagtggaacattccaaatgaataatgccctgaagtgcatttaaaaatgagggctcccaaattagtctcatctagggatgcctattaatatgcagaagcttctaaaaagatttagagatggcacgacccatctgggagcaagtttgagtcttaccagtttgatactcggtgctgagcaaagtggcacgtgtctatgttttgtcacatgtattttgctctgggcagaatgaaaaatgttaatttggttactccaagcaaccccttgggcagcatcttgcaaagctgagtggattattcctgtgattccatgattttccattgtgatgcagcttggcccccagagctataatgtggtgaggag s panTro2.chr4_random 3321086 2812 + 6711082 AACTGTCAGTGAGGTCATAATAGGAACtgttacagtgaactaaatatggcctgggaaggactctgtacttctagatttgagtccctgtggacaaactgcaacctaacttaataggtagaaagactgaaaacctaacttaggagtatgcgcctataacagtagctgagtcctggccaatcccaacagccaaacttctgccactcacacactgctgagtgttcagctgtgttcaaataaggcaaatgctgagcactgtaaccagtccagttgtttctggacctcactgctgagaactgtaatggacccagctgcttctagacctcact---------------------------------------------------------------------------cctcacttcagatttttgtacatcatgttccctttattgtctataaatcttccaccatgtgtctgtgctggagtctcattgaatctgctgtgattctgggggctgcctgattcgtgaatcattcattgctcaattaagttcctttaaatttaattcagctgaagattttcttttaataGATGGTGTCAGAAGTGGGATCTGTGGGAGCAGGACTGCTAGGGCCTCTGGAGCTATACTGTGGTGAGCAGTGTTGCTAAGGCTTCTAATGACCCCC-GGAGTGCTGAGGTACAAGGAAGGAACCTGCAAGGACCCGTTTGTGATGGCAGCAGTGGCCCACGTGGAGCAGTTGCTATGGAGACACTggctgcagtggggaggagtggctggggctgtgtgctcctcaaagctggtgggagccaggaaagggtgggagacctgccccttctaaattgtcaggcaggagccccgccctcccaggcacagctgcagccatccagccatgactgcaaacctgggcatctctgcactctcagaggcccagcaagcccccctgcccc-gcaggctcagttgtacctggtcccgccacctggcgtctctccgctcccagagcccactccaacttcggatccaagttgaggccaaacccgggcacagtcgcaacccggcccggtttgtgcaagctcagggcagtgctgacatgccagccccctgccacctcgg-cccctccagactttgggcactggcaagcacaggagggaggctgaggtggggctaagtgtggctcagcagtggccggaaggccctcctcagctcgaacggcctgggcactatgggcacagctacccaccatgcgtctcctctcagctgctgagagctgaacagacgttgggatgacctgcctgcagaaaggagctacccactgcaggtctcctctaagctgtattgtggctcaataaagcacctcttcaccttgctcaccttctacttgtccacatacctcatttttcctggactcaggacaagaactcgggacctgccaactagcagggctgaaagaggtgtaacataaacagg-------gctgaaacgcgctccttgcttgccaaattgcaggcaagaagaagacaagagagaaggagagaagagctgtgtcccttcagggaacacagacctaggagctcccccagccagggctgtgacaccttctttggggctctgcaggtcctgcatctccaagtttctgggtgccactgcattccctgatacccacagtggaagctgtttgcagttggcctggtccagctgcagcctcacagggagctggcacctgtgccggtgcctggagctgcccaccccactgcagctggcatgcttggctgtgtgcagtggccagatcccatgttcgcttgctcacacacccctcactgctctgtacccagctcgcccttggcaggtgtgggatccagacgactagcatgagccgagtggacagaactaacccagtgggcccgagcaaaacacaggtaaaggctccaccagccagaggtttcaggcagaaaaatgacacctcaggaatttgtaacacttgtgtcctttgacctctcggagcagctggggatcatggtaaattttctctcggatttcagagctccatggatttgtgttttgagctctgagtttctttgagcaaatttctgttccaaactgctatccagtcatgactggctggatgttttagaagttatgacagaaacgggaccgggtccaggatcagatttgatccagtagttaactggcttgaatccagttccagttagaggcctcctacatctgactgggtcagaaggaaagtggtagtaaatgacaatattgga-aggttgtaacatttagcttttgaaaattcacagggatttttgtgttctacccctttgtttcatttttctcgcacgcttaggcaggaaaaaaaaaatcattggctaagttaatgaagggaacctgggagtaaagccaatattttaggtaaaaataggatccttaatttctggaaaactaagttccttctggctaatacattaggcctgggaagcagcaaagtcttacagaaatggcaaaatcttactaaagataacttacagtggaacattccaaatgaataatgacctgaagtgcatttaaaaatgagggctcccaaattagtctcatctagggatgcctattaatatgaagaagcttctaaaaagatttagagatggcacagcccatctgggagcaagtttgagtcttaccagtttgatactgggtgctgagcaaagtggctcgtgtctatgttttgtcacatgtattttgctctgggcagaatgaaaaatgttaatttggttagtccaagcaaccccttgggcagcatcttgcaaagctgagtggattcttcctgtgattccatgattttccattgtgatgcagcttggcccccagagctataatgtggtgaggag i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42329308 2852 + 202140232 AACTGTCAGTCAGGTCATAATAGGAACtgttacagtgaactaaatatggcctgggaaggactctgtacttctagatttgagtccctgtggacaaactgcaacctaacttaataggtagaaatactgaaaacctaacttaggagtatgcacctgtaacaatagctgagtcctggccaatcccaacagccaaacttctgccactcacacactgctgagtgttcagctgtgttc-aataaggcaaatgctgagaactataaccagtccagttgtttctggacctcactgctgagcactgtaacagacccagttgcttctggacctcactgctgagaactgtagccagtccagttgtttctggacctcactgctgagaactgtaacgaacccagttgtttctggacctcacttcagatttctgtacatcacgttccctttattgtctataaatcttccaccatgtggctgtgctggagtctcacagcatctgctgtgattctgggggctgcctgattcgtgaatcattcattgctcaattaagctcctttaaatttaatttggctgaagattttat-----tAAATGGTGTCAGAAGTGGGATCTGTGGGAGCAGGACTGCTAGGGCCTCCGGAGCTATAGTGTGGCGAGCAGGGTTGCTAGGGCTTCTAATAACCCCCAAGAGTGCTGAGGTACAAGCAAGGCACCTGCAAGGACCCCTTTGtgatggcagcagtggcccacgtggagcagtcgctaaggagacactggttgcagtggggaggagtggctggggctgtgcgctcctcaaagctggtgggagccaggaacgggtgggagccccgccccttctaaattggcaggcaggagccccgccctcccaggcacagcggcagccgtccagccatgactgcagacccgggcatctctgcactgtcagaggcccagcaagcccccctgcccctgccggctcagacgtacctggtcccgtcacctggcgtctccctgctcccagagcccactccaactttggatcaaagttgaggccgaacccaggcgctgtcgcaacccagccgggtatgtgcaagctcagggcagtgctgacctgccagctccctgccacctcggccccctccagactttgggcactgacaagtacaggagggaggttgaggtggggctaagggtggctcagcactggcctgcaggcgcccctcagctcaaacagcctgggcgctgtgggcactgTTACCCAGCATTggtctcctctcagctgctgagagctgaacagacatcaggatgacctgcctgtagaaaggagctacccactgcaggtctcctctgagctgtactgttgctcaataaagcacctcttcaccttgctcaccttctacttgcccacatacctcattcttcctggacacaggacaagaactcaggacccgccaaccagcagggttgaaagaggtgtaacataaacagggccccttgctgaaacacgccccttgtttgccaaattgcaggca---------------agaaggagagaagagctgtggcccttcagggagcccagacctaggagctccccaagccagggctgtgacatcttctttggggctctgcagttcctgcatctccaagcttccaggcgccactgcattccctgataatcgcagtggaagctgtttgcagtctgcctggtccagctgcagcctcacagggagctggcacctgtgccggtgcctggagctgcccaccccaccacagctagcatgcttggctgtgtgcagtggccagatcccacactcgcttgctcacacaaccctcacttctctgagcccagctcacccttggcaggtgtgggatccagaccattagcatgagccgagtggacagaacgaacccagtgggcccgagcaaaacacaggtaaaggcgccaccagccagaggtttcaggcagaaaagtgacaccccaggattctgtaacacttgtgccctttgacttctcggagcagatggggaccatggtaaattctctctcagatttcagagctccatggatttgtgttttgagctctgagtttctttgagcaaatttctgttccaaactg------------------------ggtttagaagttatgacagaaacgggacccagtccaggatcagatctgatccagtagttaactggcttgaatccagttccagttagaggcctcctacatctgactgggtaagaatggaagtggtagtaaatgataatattggaggggttgtaaaatttggcttttgaaaattcacagagatttttgtgttctacccctttgtttcatttttctcacacacttaggtagg-aaaaaaaaatcattggctaagttaatcaagggaacctaagagcaaagccaatattttaggtaaaaataggatccttaatttctggaaaactaagttccttctggctaatacattaggcctgggaagcagcaaagtcttacagaaatggcaaaatcttactaaagataacttacagtggaacattccaaatgaataatgccctgaagtgcatttaaaaatgagggctcccaaattagtctcatctagggatgcctattaatatgcagaagcttctaaaaagatttagagatggctcagcccatctgggagcaagtttgagtcttaccagtttgatactgggtgctaagcaaagtggctcatgtctatgttttgtcacatgtattttgctctgggcagaatgaaaaatgttaatttggttactgcaagcaaccccttgggcagcaccgtgcaaagctgagtggattcttcctgtggttccatgattttccattgtgatgcagcttgggccccagagctatagtgtggtgagGAG i ponAbe2.chr3 C 0 I 4433 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=167880.000000 s hg19.chr4_gl000194_random 106353 1906 + 191469 ggtgacagagcAAGATGCAATCTTTAAAAAAAAAAAATggccaggtgcagtggctcgtgcctgtaatcccaacacttggggaggctgaggcaggtggatcacctgaggtcaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagctgggcatggtggcacatgcctctaatcccagctactcaggaggctggggcaggagaatcgcttgaacccgggaggcagagggttgcagtgaaccgaaatcacaccattgcactccagcctgggcaacaagagggaaaatccatctcaaaaaaaaaaaaaaaagaaagaaTAataggtttgtctataaggttttatgaaaaagtaggtgacatttggctttctctctttaaagaagatgttcaggtaatattaaaaaataatgaaaaatttgtttgccttttaaataaactaccaaaaaaaaaaaaaaaggaaaaacaagaggcagatcgtttgtgaagataagtcttccctctatcaatcagtaaagatttttgccctttaaaacttttttaagtcatgattttaagtaaatgaatgacttacggtgacctggaattctatttcataacatcaagtgtttaaacttttaatatatttaataggcttcccaaaatcaaatttcaacttcaaaattgtcttttctgacctctaactttgggatactacagaggcccttgaagcacccaaaagagaggtaaacaggactatttaacatgttaagtcacatgggtagcactgtcaaaataaaacataatgttgaaccttcttcaggttatatttagtttatttcatcaacccgttctaaaattgtataggatttctaaaattc-ttttttttttttcccccgaaacggagtcttgctctgtcaccaaggctggagtacagtggcacaatctcggctcactgcaacctccgcctcctgggttcatgtcattctcctgcttcagcctcccgagtagctgggactacaggcatccaccaccatgccaagctaatttttgtatttttagtagagacggggtttcaccgtgttagccaggatgttctcatctcttgacctcgtgatccttccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcaactggccaggattctaaaattctaatatgcctatatgctatctatcataattacctgttttgtttgttttgagacagagtttcgctcttgtcacctaggctggagtgcaatggtgtgatctaggctcactgaagcctccacctcctgggttcaagcatttatcctgcctcagcctcccaagtagctgggattacagacaactgccaccacatccggctaatttttttttatttttagtagagacagggttttaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctaacttggcctctcaaagagctgggattacaggaatgagccaccacatccaccctaattatggttattaagttattgtagaccacagaaataaccaaatttccttatcaattgtctttaactataactatttaaagtcatttccacagttaattgcttaatggtgatgcagtttctaaaaacttcacaagcatgcaaaattctagaatagaagattcatgaaagaatgaaaaggaccatgaaaaacactcgggaacacaggtttctaataactttaatatcatgggtaaaaattccccataagttccccgatcccccaataattggactggttaagaattctcaaaagttaggctgggtgcagtggctcatgttggcaatcccagcactttgggaggctgaggccggtggatcacttgaggtcaggagtttg s panTro2.chr4_random 3323898 1897 + 6711082 ggtgacagagcAAGACGCAATCTTT--AAAAAAAAAATggccaggcgcagtggctcatgcctgtaatcccaacacttggggaggctgaggcaggtggatcactagaggtcaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagttgggcatggtggcacatgcctctaatcccagctactgaggaggctggggcaggagcatcgcttgaacccgggaggcagggggtggcagtgaaccgagatcacaccattgcactccagcctgggcaacaagagggaaaatccatctc----aaaaaaaaaaaagaaagaaTAataggtttgtctataaggttttatgaaaaagtgggtgacatttggctttctctgtttaaagaagatgttcaggtaatattaaaaaataatgaaaaatttgtttgccttttaaataaactaccaaaaaaaaaaaaaaaggaaaaacaagaggcagatggtttgtgaagat--gtctttcctctatcaatgagtaaagatttttgccctttaaaacgtttttaagtcatgattttaaataaatgaatgacttatggtgacctggaattctatttcataacatcaagtgtttaaacttttaatatatttaataggcttcccaaaatcaaatttccacttcaaaattgtcttttctgacctctaactttgggatactacagaggcccttgaagcacccaaaagagaggtaaacaggactatttaacatgttaagtcacattggtagcactgtcaaaataaaacaaaatgttgaaccttcttcaagttatatttagtttatgtcatcaatccgttctaaaattgtataggatttctaaaattcttttttttttttttccccaagaaggagtcttgctctgtcacccaggctggagttcagtggcacaatctcggctcactgcaacctccgcctcctgggttcatgccattctcctgcttcagtctcccgagtagctgggactacaggcatccaccaccatgccaggctaatttttgtatttttagtagagatagggtttcaccgtgttagccaggatgttctcatctcctgacctcgtgatccttccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcacctggcaaggattctaaaattctaatatgcctatatgctatctatcataattacctgttttgtttgtttggagacacagtttcgctcttgtcacctaggctggagtgcaatggtgtgatctacgctaactgaagcctccccctcctgggttcaagcatttcacctccctcagcctcccaagaagctgggattacagacaactgccaccacatccggctaa--tttttttatttttagtagagacagggttttaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctaacttggcctctcaaagacctgggattacaggaatgagccaccacatccaccctaattatggttattaagttattgtagaccaaagaaataatcaaatttccttatcaattgtctttaactataactatttaaagtcatttccacagttaattgcttaatggtgatgcagtttctaaaaacttcacaagcatgcaaaattctagaatagaagattcatgaaagaatgaaaaggaccatgaaaaacactcgggaacacaggtttctaataactttaatatcATGAGTAAAAATTGCCCATAAGTTCCCCAATCCCCCAATAATTGGACTGGTTAAGAATTCTCAAAAGTTAGgctgggtgcagtggctcatgttggcaatcccagcactttgggaggctgaggccggtggatcacttgaggtcaggagtttg i panTro2.chr4_random C 0 I 6239 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=98752.000000 s hg19.chr4_gl000194_random 108259 1075 + 191469 agaccagcctggccaatggtgaaaccccgcctctactaaaactacaaaaattagccgggtgtggtggtatgcatctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggcgggggttgcagtgagccaagattgtgccactgcactccaacctaggtaacagagtgagactctgtctcaaaaaaaaaaaaaaa--tcctaaagtttaataagaagaccaactggtttataaaactgctaacccaagtaaaacaaaaattgaatatcaaggaaatattttgccagattcgcatgctaaatcaccaatattgaaattgtttagatatataatttaaataaactccatggtctaagccaaattacctataactcatcagttaccagtgccatgcacctaatttgaagaaacagctggtattcaagaggatgtaagtctaacgttaattaagcacggacttatgaagaaccaggatggccacctt-tccgtcttaagtccttaaaacttttgttattaaaagttctgcattccataactcatcatggaaagagaaaatgatccaaattaaatatattgctgtggtgatctctaaattgctaaaatagtttataatcaatgtttggtttgttgaacctatattcctaggaaaacaatcaaaacttcaggtacatttggttacctgatgggccatttaaacattttataaagggatttcattcagttgtcattttcagtgcatgttttctgattgtaaaaaagctcttccatgcaagagggttgatgttaaaacagtagattattatgctgaagtgtattttcaccagctaaagaaagccttttatggttcacagaggacagccaaccccttcacaatctagaatctgatgactggatcttctgagaacatcagaggactgcccttgccattcacatgacagcaaaactttaaaaccttaaactttgggttcatagtcttacaactcagaagggtccctccacactcggaaccatacaccccttggaacccttaaggtaaagctaacaaggacagttcccccc s panTro2.chr4_random 3332034 1078 + 6711082 agaccagcctggccaatggtgaaaccccgcctctactaaaactacaaaaattagcccggtgtggtggtatgcatctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagattgtgccactgcactccaacctaggtaacagagtgagactctgtctcaaaaaaaaaaaaaaaaatcctaaagtttaataagaagaccaactggtttataaaactgctaacccaagtaaaacaaaaattgaatatcaaggaaatattttgccagatttgcatgctaaatcaccaatattgaaattgtttagatatataatttaaataaactccatggtctaagccaaattacctataactcatcagttaccagtgccatgcacctaatttgaagaaacagctggtattcaagaggatgtaagtctaatgttaattaagcacagacttatgaagaaccaggatggccaccttgtccatcttaagtccttaaaacttttgttattaaaagttctgcattccataactcatcatggaaagagaaaatgatccaaattaaatatattgctgtggtgatctctaaattgctaaaatagtttataatcaatgtttggtttgtcaaacctatattcttaggaaaacaatcaaaacttcaggtacatttggttacctgatgggccatttaaacattttataaagggatttcattcagttgtcattttcagtgcatgctttctgattgtataaaagctcttccatgcaagagggttgatgttaaaacagtagattattatgctgaagtgtattttcaccagctaaagaaagccttttatggttcacagatgacagccaaccccttcacaatctagaatctgatgactggatcttctgagaacatcagaggactgcccttgccatccacatgacagcaaaactttaaaaccttaaactttgggttcatagtcttacaactcagaagggtccctccacactcggaaccatacaccccttggaacccttaaggtaaagctaacaaggacagttcccccc i panTro2.chr4_random I 6239 I 17223 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=26059.000000 s hg19.chr4_gl000194_random 109334 288 + 191469 agaagaagatggcatccttaatgtgaacagcttttcctaagatcacagatcaagacttctctactatcatgagactcttatcttaagtatctgtgcagctgctaacatggcatatggagaaaacatcgggtattataaagatttggttgtagggaattaacaaaaaaa-cccacttagttaagcaagtaaactctttatctaattcattctttaatctatttgattttaggtggtttgatttatggggaccctgagtaaggagcatataccaaattcttggtgttatcc s panTro2.chr4_random 3350335 289 + 6711082 agaagaagatggcatccttaatgtgaacagctttccccaagatcacagatcaagacttctctactatcatgagactcttatcttaagtatctgtgcagctgctaacatggcatatggagaaaacattgggtattataaagatttggttgtagggaattaacaaaaaaaacccacttagttaagcaagtaaactctttatctaattcattctttaatctatttgattttaggtggtttgatttatggggaccctgaataaggagcatataccaaattcttggtgttgtcc i panTro2.chr4_random I 17223 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=7040.000000 s hg19.chr4_gl000194_random 109622 69 + 191469 caatagtcataagagtctc---------cctggtgcactgtacttactcaaatgttttaagagttt--gcat-acagccat s panTro2.chr4_random 3350624 69 + 6711082 caatagtcataagagtctc---------cctggtgcactgtacttactcatatgttttaagagttt--gcat-gcagccat i panTro2.chr4_random C 0 C 0 s petMar1.Contig1274 6494 69 - 36992 CACTGAACACAAGAGTTTCGTCATCACACCCAATGCACTGAAC------------ATTAAGAGTGTCGTCATCACACCAAT i petMar1.Contig1274 N 0 I 214 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=3541.000000 s hg19.chr4_gl000194_random 109691 40 + 191469 ctgtaaaatgtcaaatggtatctcttcaactggaatgaca s panTro2.chr4_random 3350693 40 + 6711082 ctctaaaatgtcaaatggtatctcttcaactggaatgaca i panTro2.chr4_random C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e petMar1.Contig1274 6563 214 - 36992 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=4388.000000 s hg19.chr4_gl000194_random 109731 41 + 191469 acagattaaaaaaaatgt-gcaaccataaggacaccgtaacc s panTro2.chr4_random 3350733 41 + 6711082 acagatttaaaaaaatgt-gcaaccataaggacaccgtaacc i panTro2.chr4_random C 0 C 0 s petMar1.Contig1274 6777 42 - 36992 ACTGATCATTAAGAGTGTCGTCATCACACCAATGCAGTGAAC i petMar1.Contig1274 I 214 I 107 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=16641.000000 s hg19.chr4_gl000194_random 109772 144 + 191469 tatgagtgacatgctaaaccagaaacccaaaacaatgggagtgacatgctaaACCAGAAACCCAAAACAATGGGACTGATGTACTAAAACCGGAACCCAAAACAATGGGAGTGATGTACTAAAACCAGAACCCAAAACAATGGA s panTro2.chr4_random 3350774 144 + 6711082 tatgagtgacatgctaaactggaaacccaaaacaatgggagtgacatgctaaACCAGAAACCCAAAACAATGGGACTGATGTACTAAAAGCGGAACCCAAAACAATGGGAGTGATGTACTAAAACCAGAACCCAAAACAATGGG i panTro2.chr4_random C 0 C 0 s petMar1.Contig1274 6926 144 - 36992 TAAGAGTGTCGTCATCACACCAATACACTGAACATTAAGAGTGTCGTCATCACACCAATACACTGAACATTAAGAGTGTCGTCATCACACCAATACACTGAACATTAAGAGTGTCGTCATCACACCAATACACTGAACATTAAG i petMar1.Contig1274 I 107 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I e ponAbe2.chr3 42332160 4433 + 202140232 I a score=42766.000000 s hg19.chr4_gl000194_random 109916 151 + 191469 AGTGACGTGCTAAACCAGAAACCCAAAACAATGGGAGTAACATGCTAAAACCAGAACCCAAAACAATGGGAGTGACGTGCTAAAACCATTACCCAAAACAATGGgagtgatgtgctaaaccggaaacccaaaacaatggtaactaagagtg s panTro2.chr4_random 3350918 151 + 6711082 AGTGACGTGCTAAACCAGAAACCCAAAACCATGGGAGTAACATGCTAAAACCAGAACCCAAAACAATGGGAGTGACGTGCTAAAACCATTACCCAAAACAATGGgagtgatgtgctaaaccagaaacccaaaacaatggtaactaagagtg i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42336593 149 + 202140232 agtgacatgctaatccggaaacccaaaacaatgggagtgacgtgct-aaACCGGAACCCAAAACAATGGGAGTGACCTGCTAAAAGCAGATCCCAAAACAATGGgagtgac-tgctaaaccggaaacccaaaacaatggtaactaagagtg i ponAbe2.chr3 I 4433 C 0 s petMar1.Contig1274 7070 144 - 36992 AGTGCCGTCATCACACCAATGCACTGAACATTAAGAGTGTCGTCATCACACCAATGCACTGAACATTAAGAGTGCCGTCATCACACCAATGCACTGAACATTAAGAGTGCCGT-------CATCACACCAATACACTGATCATTAAGAGTG i petMar1.Contig1274 C 0 N 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=328547.000000 s hg19.chr4_gl000194_random 110067 1284 + 191469 aggctaaggccctacattttggtcacactctcaactaagtgagaacttgactgaaaaggagga---ttt---tttttttctgagacagagtcttgctctgtcccccagagtggagtgcagtggcatgatctcggctcactgcaagctctgcctcctgggttcaggccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccagcatgcttggctatttttttgtgtatttagtagagatgaggtttcaccgtattagcaaggatggtctcaatctcctgatctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccagccaaaaggaggaattttttaagcaaaattatgggaggccattgttttgaactaagctcatgcaataggtcccaaaagaacaaaccaaaccaaaatggagtcactcatgctaaatggaacataatcaaactaagactttaaggaaacacataaatcctagaacaaaccaggttttgtttttctcctgtaaacaggatgttccagcataagaagacaccttctactcaagtccttgttccaccttttcaaatctcactgttctatttcccagtgggtttctaaaccaaataaatacatttgcaagggtaatagtgacaccagtgactgaagttttggccaatctctcaaaattgagaaaataaccaaagggaaggcattgttaaagtgaactaagtatgtcctgagaaggactccataattatatatatgagtccttgtggatgacctgcaacctaccttaataggtaaacaagaatgaaaacctaacttgagtgtatgcacctcaaacaacagctacatcttggccaatcccaatggccaaacttcaaccactcaggcactgccaaatgttcaaactgtgctcaaacaaggcaaacgctgagttgtttctgtacctcacttccgatttcggtatgccacttcccttttgtctataaatcttcttccaccacatgactgtgctggagtctctgtgaatctgctgtgattctggggactttccgattcatgaatcgtttattgctcaattaaactcctttaaagtttttcttttaacaGAACTAACACGGAAGAATTTCCAGATCATGAACAGATGTTTTGTAATACCCAACGTTGTATTAACATGAATAGACTCTTCCTTAgatagctaaccttgtttttaatatgaatagactctcccttagctgagaaaaccagacaaactccatttggc s panTro2.chr4_random 3351069 1287 + 6711082 aggctaaggccctacattttggtcacactctcaactaagtgagaacttgactgaaaaggagga---tttttgtttttttctgagacagagtcttgctctgtcccccagagtggagtgcagtggcatgatctcagctcactgcaagctctggctcccgggttcaggccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccagcgtgcttggctatttttttgtgtatttagtagagatgaggtttcaccgtattagaaaggatggtctcaatcttctgatctcgtgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccagccaaaaggaggaattttttaagcaaaattatgggaggccattgttttgaactaagctcatgcaatgggtcccaacagaacaaaccaaaccaaaatggagtcactcatgctaaatggaacataatcaaactaagactttaaggaaacacataaatcctagaacaaaccaggttttgtttttctcctgtaaacaggatgttccagcataagaagacaccttctacttaagtccttgttccaccttttcaaatctcactgttctatttcccagtgggtttctaaaccaaataagtacatttgcaacggtaatagtgacaccagtgactgaagttttggccaatctctcaaaattgagaaaataaccaaagggaaggcattgttaaagtgaactaagtatgtcctgagaaggactccataattatatatatgagtccttgtgggtgacctgcaacctaccttaataggtaaacaagaatgaaaacctaacttgagtgtatacacctcaaacaacagctacatcttggccaatcccaatggccaaacttcaaccactcaggcactgccaaatgttcaaactgtgctcaaacaaggcaaacgctgagttgtttctgtacctcacttccgatttcggtatgccgcttgccttttgtctataaatcttcttccaccacatgactgtgctggagtctctgtgaatctgctgtgattctggggactttccgatttgtgaatcgtttattgctcaattaaactcctttaaagtttttcttttaacaGAACTAACACAGAAGAATTTCCAGATCATGAACAGACGTTTtgtaatacccaacgttgtattaacatgaatagactcttccttagatagctaaccttgtttttaatatgaatagactctcccttagctgagaaaaccagacaaactccatttggc i panTro2.chr4_random C 0 I 1703 s ponAbe2.chr3 42336742 1290 + 202140232 gtgctaaggccctacgttttggtcacactctcaactaagtgagaacttgactaaaaaggaggaatttttttttttttttttgagacagagtctcgctctgtcccccagactggagtgcagtggcatgatctcacctcactgcaacctctgcctcccaggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcatctgccaccacgcctggctaattttttctatttttagtagagacggggtttcaccatgttagccaggatggtctcaatctcctgaccctgtgatccgcctgcctcagcctcccaaagtgctgagattacaggagtgagccaccgtgaccagccaaaagaaggaattttttaagcaaaattatgagaggccattgttttgaactaagctcatgcaataggtcccaacagaccaaaccaaactaaaatggagtcactcatgctaaatgtaacataatcaaactaagactttaaggaaacacataaatcctagaacaaaccaggttttgtttttctcctgtaaacaggacgttccagcataagaaggtaccttctattcaagtccttgttccaccttttcaaaactcactggtctatttcccagtgggtttctaaaccaagtaagtacatttgcaatggtagtagtgacaccagtgactaaagttttggccaatctctcaaaattgagaaaataaccaaaggaaaggaattgttaaagtgaaataagtatggcctgagaaggactccataattctatatatgaatccttgtggatgaactgcaacctaccttaataggtagacaaaaatgaatacctaacttcagagtatgcacctggaacaacagctgcatcttggccaatcccaatggccagacttcaaccactcaggcactgtcacttgttcaaactgttttcaaacaaggcaaacgctgagttgtttctgtaccacacttctgatttcggtatgccacttcccttttgcctataaatcttcttccaccacatgactgtgatggagtctctgtgaatctgctgtgattctggggactgtccaattcatgaatcatttattgctcaattaaactcctgtaaagtttttcttttaacaGAACTAACACAGAAGAATTTCCAGATCATGAACAGACATTTtgtaatacccaatcttgcattaacatgaatagactcttccttagatacctaaccttgtttttaatatgaatagactctcccttagctgagaaaaccggacaaactccatttggc i ponAbe2.chr3 C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=154188.000000 s hg19.chr4_gl000194_random 111351 602 + 191469 tccttcatttacaagacatcaagggctccttacccaccccctttcctcaaggactttaacttgtgcaagctgattttcaacatatcaaagagtgcaattaactgataaagtgctgaggcaagtgaagtccgcagtttccagcaaattactcagagataatatcataaagcccccacatttgtctggaagataatgcccagagccccctcactcatcactttgtggtgaatttaaagcctctgcacctggaacaatttgttttcctgtaaccatctgtctttttaagttttttgtctgttttttcttctgtaagtttattgcagctggaatcccccctcccctctctaaaccaatgtataaaagaaaatctagcccattctttagggccgagagtatttcctgtgttagccgtctctcagtcaccagctaataaaggactcctgaattcgtctcaaagtgtggcatttctctctaacttgcttgggtacgacaGTTTCAACTATGGTAGAAGACTCGAGTAAGACAAATACAGCCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGTTTAGAAGAAATAAGTTAAGACTACACAGAGT s panTro2.chr4_random 3354059 601 + 6711082 tccttcatttacaagacatcaagggctccttacccaccccctttcctcaaggactttaacttgtgcaagctgattttcaacatatcaaagagtgcaattaactgataaagtgctgaggcaagtgatgtccacagttcccagcaaattactcagagataatatcataaagcccccacatttgtctggcagataatgcccagagccccctcactcatcactttgtggtgaatttaaagcctctgcacctggaacagtttgttttcctgtaaccatctgtctttttaagttttttgtctgttttttcttctgtaagtttattgcagctggaatcccccctcccctctctaaaccaatgtataaaagaaaatctagcc-gttctttagggccgagagtatttcctgtgttagccatctctcagtcaccagctaataaaggactcctgaattcgtctcaaagtgtggcatttctctctaactcgcttgcgtacgacaGTTTCAACTATGGTAGAAGACTCGAGTAAGACAAATACAGCCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGTTTAGAAGAAATAAGTTAAGACTACACAGAGT i panTro2.chr4_random I 1703 C 0 s ponAbe2.chr3 42338032 602 + 202140232 tccttcatttacaagacatcaagggctccttacccaccccctttcctccaggactttaacttttgcaagctgactttcaacatatcaaagagtgccattaactgataaagtgctgaggcaagccacgtccacagttcccagcaatttacttggagacagtaccacaaagcccccacatttgtctggcagataacgcccagagccccctcacctatcactttgtgatgaatttaaagcccctgcacctggaacagtttgtttttctgtaaccatctgtctttttaacttttttgtctgttttttcttctgtaaagttgctgcagctagaatcccccctcccctctctaaaccaaagtataaaagaaaatctagtcccttctttggggccaagagaattttgtgcattagccgtctctcagtcgccggctaataaaggactcctgaattcgtctcaaagtgtggtgtttctctctaactcacttgCGTACGAGAGTTTCAACTATGGTAGAAGACTCGAGTAAGGCAAATACAGTCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGTTTAGAAGAAATAAGTTAAGACTACACAGAGT i ponAbe2.chr3 C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 44442 959 - 166387 I a score=8373.000000 s hg19.chr4_gl000194_random 111953 22 + 191469 GGGCTAAATTGCAAATAAAcac s ponAbe2.chr3 42338634 22 + 202140232 GGGCTAAAGTGCAAATAAAcac i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3354660 22 + 6711082 GGGCTAAATTGCAAATAAAcac i panTro2.chr4_random C 0 C 0 s turTru1.scaffold_116336 45401 22 - 166387 AGGTTAAGCTGCAAAAGAGCAG i turTru1.scaffold_116336 I 959 I 3570 e speTri1.scaffold_86749 8325 3850 + 13311 I a score=56077.000000 s hg19.chr4_gl000194_random 111975 217 + 191469 tgaaaatatttcccagaaaatatgactttgaacaggctgctgcacaccctgcatgtagagataaactaagaaaaatgtgtggagagttatttaaggacctgtggttaactcagtcctcaagatgttccgggtttcatccataagtcaaggaggacctcccaaaagctgtttgggaccacactctttgagcAAGGAGCATACCTTATGATGGAAGCTG s panTro2.chr4_random 3354682 217 + 6711082 tgaaaatatttcccagaaaatatgactttgaacaggctgctgcacaccctgcatgtagagataaactaagaaaaacgtgtggagagttatttaaggacatgtggttaactcagtcctcaagatgttccaggtttcatccatgagtgaaggaggacctcccaaaagctgtttgggaccacactCTTTGAGCAAGGAGCATACCTTACGGTGGAAGCTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42338656 217 + 202140232 tggaaatatttcccagaaaatataactttgaacaggccgctgcacaccttgcacgtagagataaactaagaaaaaggtgtgaagagttatttaaggacctgtggttaactcagtcttcaagatgttctgggtttcatgcatgaatcaaggaggacctcccaaaagctgtttaggaccacactctttgagcAAGGAGCATACCTTACGATAGAAGCTG i ponAbe2.chr3 C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=9695.000000 s hg19.chr4_gl000194_random 112192 126 + 191469 TGCTTTAGCAGCAGATGACCATTTCCACTGCACAACACGCCGTGCTTTAGCAGACGATGACCATTTCCACTGTACAACATGCTGTGCTTTAGCTTCAGATGACCATTTCCACTGCACAACACGCCA s ponAbe2.chr3 42338873 126 + 202140232 TGCTTTAGCAGCAGATGACCATTTCCACTGCACAACACGCTGTGCTTTAACGGAAGATGACCGCTTCCACTGCACAGCACGCCGTGCTTTAGCGGAAGATGACCGTTTCCACTGCACAGCACGCCG i ponAbe2.chr3 C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I e panTro2.chr4_random 3354899 0 + 6711082 C a score=205003.000000 s hg19.chr4_gl000194_random 112318 767 + 191469 TGCTTTAGCGGAAGATGACCATTTCCACTGCACAACACGCCATGCCTTAGCGGAAGATGACTGTTTCCACTGCACAACACTACAAGTGCTTACTGCCAGACCGGTGTGAAATATGTTCCAGCACATAATCTATGTCACCAATGAAGGTGGTGGttaagacttggtgcacacaagctttcctgtcccacaagaacacagcatgctctcttttcgggttccattccaatcacgtaacaaacatgactgccttttttgtttcggcatcagaaagatcagaggaaactttgcactcaacttagacaactctaagcttttataacctgtctatatctacaggtcagctttatcttatttatgtatatttccttcaacctgagttttacttatttccacttttCCTTTTTAATTCACAGACACCCATAAACTCAGAAAATACAGTGTAAAACAAAGTGAAGAACAAATAAACAACTCACCAGAGATTTATTCGTTTCTTGTTGCTCTTGGAAACACCCAGAGGACACTGGAAACATAGCTGGAAGAGAAGGCAAATGACGTCGATTAAGGAGAGAACTGGTGAGGTGTGGTCCCAGATTCTTCTGCCCAACACTCTAGACACATTACCTGGAAAAGCCCTCCTCCCTCCGGAAAAAGAAAAACTTCCCCATGGGAGAAGAGTCCTTCACACCTCATTAGGGGCAGCAAAGACTCAAGTTAAGATAAGATACATCTACAAGTACATTAATTGGTAGACATTAGATGCACAATTT s panTro2.chr4_random 3354899 767 + 6711082 TGCTTTAGCGGAAGATGACCATTTCCACTGCACCACACGCCATGCCTTAGCGGAAGATGACTGTTTCCACTGCACAACACTACAAGTGCTTACTGCCAGACCGGTGTGAAATATGTTCCAGCACATAATCTATGTCACCAATGAAGGTGGTGGttaagacttggtgcacacaagctttcctgtcccacaagaacacagcatgctctcttttcgggttccattccaatcacgtaacaaacaagactgccttttttgtttcggcatcagaaagatcagaggaaactttgcactcaacttagacaactctaagcttttataacctgtctatATCTACAGGTCAGCTTTATCTTATTTATGTATATATCCTTCAACCTGAGTTTTACTTATTTCTACTTTTCCTTTTTAATTCACAGACACCCATAAACTCAGAAAATACAGTGTAAAACAAAGTGAAGAACAAATAAACAACTCACCAGAGATTTATTCGTTTCTTGTTGCTCTTGGAAACACCCAGAGGACACTGGAAACATAGCTGGAAGAGAAGGCAAATGACATCGATTAAGGAGAGAACTGGTGAGGTGTGGTCCCAGATTCTTCTGCCCAACACTCTAGACACATTACCTGGAAAAGCCCTCCTCCCTCCTGAAAAAGAAAAACTTCCCCATGGGAGAAGAGTCCTTCACACCTCATTAGGGGCAGCAAAGACTCAAGTTAAGATAAGATACATCTACAAGTACATTAATTGGTAGACATTAGATGCACAATTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42338999 767 + 202140232 TGCTTTAGCGGAAGATGACCGCTTCCACTGCACAACACGCTGTGCTTTAGCAGCAGATGACCATTTCCACTGCACAACACTAAAAGTGTTTACTGCCAGGCCGCTGTGAAATATGTTCCAGCACATAATCTATGTCACCAATGAAGGTGGTGGTTCAGACTTGGTGCACACaagctttcctgtcccacaagaacacagcatgctctcttctcgggttccattccaatcacgtaacaaacatgactgccttttttgtcgcagcatcagaaagatcaaaggaaaatttgcactcaatttagacaactctaagctcttataacctgcctatATCTACAGGTCAGCTTTATCTTATTTATGTATATTTCCTTCAAGCTGAGTTTTACTTATTTCTACTTTTCCCTTTTAATTCACAGACACCCACAAACTCAGAAAATACAGTGTAAAACAAAGTGAAGAACACATAAACAACTCACCAGAGATTTATTCATTTCTTGTTGCTCTTGAAAACACCCAGAGGACACTGGAAACATAGCTGGGAGAGAAGGCAAATGACGTGGATTAAGGAGAGAACTGGTGTGGTGTGGTCCCAGATTCTTCTGCCCAACACTCTAGACACATTACCTGGAAAAGCCCTCCTACCTCCTGAAAAAGAAAAACTTCCCCGTGGGAGAAGAGTCCTTCACGCCTCATTAGGGGCAGCAAAGACTCAAGTTAAGATAAGATACATCTACAAGTACATTAATTGGTAGACATTAGATGCACaattt i ponAbe2.chr3 C 0 C 0 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=9253.000000 s hg19.chr4_gl000194_random 113085 23 + 191469 ATTTTTGAATAAAAATATGTATT s panTro2.chr4_random 3355666 23 + 6711082 ATTTTTGAATAAAAATATGTATT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42339766 23 + 202140232 atttttgaataaaaatatatatt i ponAbe2.chr3 C 0 C 0 s ochPri2.scaffold_3373 73877 23 + 168054 ACTTTGtaataaaaataaatctt i ochPri2.scaffold_3373 N 0 I 409 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=10102.000000 s hg19.chr4_gl000194_random 113108 38 + 191469 ACCTACTAATTTAGTAACAATATTACCTAAAGATATAA s panTro2.chr4_random 3355689 38 + 6711082 ACCTACTAATTTAGTAACAATATTACCTAAAGATATAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42339789 38 + 202140232 aCCTACTAATTTAGCAACAATATTACCTAAGGATATAA i ponAbe2.chr3 C 0 C 0 e ochPri2.scaffold_3373 73900 409 + 168054 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=98145.000000 s hg19.chr4_gl000194_random 113146 338 + 191469 TCTAATAATTTAATACAAAG----AAACATTATAAGTTCACTAAAATAAATGTTATAGAAATA-TACTGGGCTGTATTAACTATTTTCCTATTAATATGTGGATTCCACAAATAACTTCATATGAGTATTCCCATGACAGTACATCTTGCTTTT------------------------------------CTATACCTGAACATCATGGAAAG------------TGCATCT--------------------------------------------------------------TGCAACCCAACAATTTTGGCC-------------------TACGTTTTTT---------------------AAAATGTACATAATATGTATTTCCtgcagtacaccattctactcatgtttcccaataacacctttccctgtatccaagccctcatat--tatgctctgacaataaattgggcttttccatctgacttgtc s otoGar1.scaffold_55763.1-5280 4 495 - 5280 TTTAGTAATTTAAATCAGAGAATAAAACATTACATCTTCACTAAAGTTAATGTTATAGAAATACTCTTGGGCTATATGAAATATTTTCCTGTTAATACAGAAATACCACACAGGACCCCATATCAGTGTTTCCACCACAATGCCTCTTGCAtttttcttttgtaatcaagacagggtcttactctgttgcccacactagagtgcagaggggagaccataactcattgcagctttgaactcttgggctcaagcagagcctcccacctcaacctccagagtagataggactatgagtacaagccaccacagttggcCCCTCTTGCTTTTAGATAACTAAATTTCACATAAAGTAAGCACATAGGGAAAAAAAGTATATTATGTGCATTTCTtgtggtgtactgtcccagtaatttctctaaatgacatacctttatatatccatacccttatatgaccccctctaacaacatcctaggctttgccatttgaattatt i otoGar1.scaffold_55763.1-5280 N 0 I 1 s panTro2.chr4_random 3355727 333 + 6711082 TCTAACAATTTAATACAAAG----AAACATTATAAGTTCACTAAAATAAATGGTATAGAAATA-TACTGGGCTGTATTAACTATTTTCCTATTAATATGTGGATTCCACAAATAACTTCATATGAGTATTCCCATGACAGTACATCTTGCTTTT------------------------------------CTATACCTGAACATCATGGAAAG------------TGCATCT--------------------------------------------------------------TGCAAACCAGCAATTTTGGCC-------------------TACGTTTTTT---------------------AAAATGTACATAATATGTATTTCCTGCAGTACACCATTCTACTCATGTTTCCCAATAACACCTTT-CCTGTATCC-AGCCCTCATA---TATGCTCTGAC-ATAAANTGGGC-TTTCCATCTGANCTGTC i panTro2.chr4_random C 0 I 38 s ponAbe2.chr3 42339827 343 + 202140232 TCTAATAATTTAATACAAAG----AAACATTATAAGTTCACTAAAATAAATGTTATAGAAATA-TACTGGGCTGTATTAACTATTTTCATATTAATATGTGGATTTCACAAATAACTTCATATGAGTGTTCCCATGACAGTACATCTTGCTTTT------------------------------------CTATACCTGAACATCATGGATAG------------TGCATCT--------------------------------------------------------------TGCAACCCAGCAATTTTGGCCT-------------ACAATTACATTTTTT---------------------TAAATGTACATAATACGTATTTCCtgcagtacaccattctactcatgtttcccagtaacacttttccctgtatca-agccctcatat--tacgccctgacaataaattgggcttttccatctgacttgtc i ponAbe2.chr3 C 0 C 0 e ochPri2.scaffold_3373 73900 409 + 168054 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=-2295.000000 s hg19.chr4_gl000194_random 113484 65 + 191469 cagtgaatggacaatgga-aaatgtgatgcaaataTCCATTGGTTCTTGCCTTTTTGGACACAGTC s otoGar1.scaffold_55763.1-5280 500 36 - 5280 tggccaacaggacatgaataaaggtgatacatacat------------------------------ i otoGar1.scaffold_55763.1-5280 I 1 I 972 s ponAbe2.chr3 42340170 65 + 202140232 cagtgaatggacaatgga-aaatgtcacgcaaatatccattggttcttgcctttttggacacagtc i ponAbe2.chr3 C 0 C 0 s ochPri2.scaffold_3373 74309 9 + 168054 ---------------------------------------------CATGACC------------TC i ochPri2.scaffold_3373 I 409 I 82 e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I e panTro2.chr4_random 3356060 38 + 6711082 I a score=9513.000000 s hg19.chr4_gl000194_random 113549 50 + 191469 ATATTGTGAAGAGGTCTGGAGCTACCCTGTTGGAGACACAGGGCCTAGCC s micMur1.scaffold_18511 512 50 + 43889 atactagcaagaagcctagggttaatttgttggagatgcaggatctagcc i micMur1.scaffold_18511 N 0 I 30 s ponAbe2.chr3 42340235 50 + 202140232 atattgtgaggaggtctggagctaccctgttggagacacagggcctagcc i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e ochPri2.scaffold_3373 74318 82 + 168054 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I e panTro2.chr4_random 3356060 38 + 6711082 I a score=2703.000000 s hg19.chr4_gl000194_random 113599 31 + 191469 AAGAGTCACCAcaaaccaccagattgtgaag s ponAbe2.chr3 42340285 31 + 202140232 aagagtcaccacaaaccgccagactgtgaag i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e micMur1.scaffold_18511 562 30 + 43889 I e ochPri2.scaffold_3373 74318 82 + 168054 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I e panTro2.chr4_random 3356060 38 + 6711082 I a score=7025.000000 s hg19.chr4_gl000194_random 113630 33 + 191469 gaaactatcttaaaccaaccaggctcagtcaag s micMur1.scaffold_18511 592 28 + 43889 gaagccaccctgaaccaaccagtctcag----- i micMur1.scaffold_18511 I 30 I 2837 s ponAbe2.chr3 42340316 33 + 202140232 gaaactatcttcaaccaaccaggctcagtcaag i ponAbe2.chr3 C 0 C 0 s ochPri2.scaffold_3373 74400 16 + 168054 ----CCATCTTCAAG-------------TCAGG i ochPri2.scaffold_3373 I 82 I 1151 s panTro2.chr4_random 3356098 21 + 6711082 ------------aaccaaccaggctcagtcaag i panTro2.chr4_random I 38 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=69756.000000 s hg19.chr4_gl000194_random 113663 289 + 191469 gcaccaggtgactaaggcctgttttgtgatccaggcaacacaaatatatcaactacccagctgaacccaccacaccaaaatgcagatccacagaacttcaaacaaataaaatggtggttgttttttataagctagtaaggtttaattagttccttaaacagcaaatattaactgttacaCCTAAGTGAATAGAATTCAATATGTTTTTAACGAAATTATGTAGGGGGAGAAAGTCTTAAATTACAAATCAAATGCAATCAATAGAACTTCACAATCT-ATGCTAAATTTG s ponAbe2.chr3 42340349 288 + 202140232 gcaccaggtgaccaaggcctcttttgtgatccaggcaacacaaatatatcaactacacagctgaacccaccacaccaaaatgcagatccacagaacttcgaacaaataaaatggtggttgttttttataagccagtaaggtttaattagttccttaaacagcaagtattaactgttacaCCTAAGCGAACAGAATTCA--ATGTTTTTAACAAAATTACATAAGGGGAGGAACTCTTAAATTACTAATCAAATACAATCAATAGAACTTCACAATCTAATGCTAAATTTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3356119 288 + 6711082 catcgaagtgactaaggcctattttgtgatccaggcaacacct-tataacaactacccagctgaacccaccacaccaaaatgcagatccacagaacttcaaacaaataaaatggtggttgttttttataagccagtaaggtttaattagttccttaaacagcaaatattaactgttacaCCTAAGTGAATAGAATTCAATATGTTTTTAACGAAATTATGTAGGGGGAGAAAGTCTTAAATTACAAATGAAATGCAATCAATAGAACTTCACAATCT-ATGCTAAATTTG i panTro2.chr4_random C 0 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 74416 1151 + 168054 I e speTri1.scaffold_86749 8325 3850 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=23470.000000 s hg19.chr4_gl000194_random 113952 86 + 191469 GTGATGGACTAGGTTTAATATATCTCAG-ACACTGGAAACAACAAGCTAAG---TTTGAAGGAATGGGACTGTATTTGGAGAGTATTTCC----- s speTri1.scaffold_86749 12175 93 + 13311 GTGATAGACTAAGTTTGAGATAACTCAATGTATAGCAAACAATGAGGAAAAAACACTGAAGGAATTG--CAGTGTGTACAAAACACTGTAGACAG i speTri1.scaffold_86749 I 3850 C 0 s panTro2.chr4_random 3356407 86 + 6711082 GTGATGGACTAGGTTTAATATATCTCAG-ACACTGGAAACAACAAGCTAAG---GTTGAAGGAAATGGACTGTATTTGGAGAGTATTTCA----- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42340637 83 + 202140232 GTGATGGACTAGGTTTAATGTATCTCAG-ACGCTGGAAACAACGAGCTAAG------GAAGGAATGGGACTGTGTTTGGAGAGTATTTTA----- i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 74416 1151 + 168054 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=69319.000000 s hg19.chr4_gl000194_random 114038 177 + 191469 ATCTTTTCAAGTATGACAGGTCACTCCTGCACCCCAGACCACACTTTCAGGCCCCTTCAAATAAGGAATATTTCCTAGGTCCTTGCCTGTTCTT-CTCAGCTGAATTCACCTCAACCTTCTGAAAGTTCTTCCAAACCTTTCACTATCACCTAGTCTTTG---------------------------CAAATCTTGTGCATTCTA s dipOrd1.scaffold_38962 9296 187 - 10118 ATACTTTCAGTTGTGACA-ATAATTCCTCCTCCACAAATCACACCTCCATGTCCCTTCTGAGAA----------CTAGG---TTCCGTCTGATTCCTCAGGCAAGTTCATTTCCCCTC-CTACAAGTTAGTGTAAACCTTCCAACAGCATCAAGTGATTGGGAG-TGTTAGAGGAAAGAGTACCACCTGAGTCTTGTGC--TCTA i dipOrd1.scaffold_38962 N 0 C 0 s speTri1.scaffold_86749 12268 194 + 13311 ATGCTTTCAGATACG----------CCTCCAGCCCAGGCCACATCTTTAATCATTTTCCATTAAGTACCATTTCCTAGGCCCTTGCCTATCCTCCCTTAGCTCAGCTTACCTTTCCGCTCTGAAAGATGGTTCAAA-CTTTCAATCCTACCAAGTCCTTGACAGCTACTGGATGAGGTACAATCAACCAAGTCCTGGGCATTCTA i speTri1.scaffold_86749 C 0 C 0 s panTro2.chr4_random 3356493 177 + 6711082 ATCTTTTCAAGTATGACAGGTCACTCCTGCACCCCAGACCACACTTTCAGGCCCCTTCAAATAAGGAATATTTCCTAGGTCCTTGCCTGTTCTT-CTCAGCCGAATTCACCTCAACCTTCTGAAAGTTCTTCCAAACCTTCCACTATCACCTAGTCTTTG---------------------------CAAATCTTGTGTATTCTA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42340720 177 + 202140232 ATCTTCTCAGGTATGACAGATCACTCCTGAACCCCAGACCACACTTTCAGGCCCCTTCAAATAAGGAATATTTCCTAGGTCCTTGCCTGTTCTT-CTCAGCCGAATTCACCTCAACCTTCTGAAAGTTCGTCCAAACCTTCCACTACCACCTAGTCTTTG---------------------------CAAATCTCGTGCATTCTA i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 74416 1151 + 168054 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=5001.000000 s hg19.chr4_gl000194_random 114215 37 + 191469 GGGAGTAGAATTAAT-ATTTCCTGA------GCGAGGAAAACTG s ponAbe2.chr3 42340897 37 + 202140232 GGGAGTAGAATTAAT-ATTTCCTGA------GCGAGGAAAACTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3356670 37 + 6711082 GGGAGTAGAATTAAT-ATTTTCTGA------GCGAGGAAAACTG i panTro2.chr4_random C 0 C 0 s dipOrd1.scaffold_38962 9483 38 - 10118 GTGAGTAGAACCAAT-CTTTGCTTAAG----GCAAAG-AACCTG i dipOrd1.scaffold_38962 C 0 C 0 s speTri1.scaffold_86749 12462 36 + 13311 CACAGTAGGGCCAAT-AATTACTTAGGCTATGCAAAG------- i speTri1.scaffold_86749 C 0 C 0 s ochPri2.scaffold_3373 75567 33 + 168054 CAGGGCAGCATCACTGCAGTGTCCATGA---GCGTA-------- i ochPri2.scaffold_3373 I 1151 I 944 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=13321.000000 s hg19.chr4_gl000194_random 114252 55 + 191469 GGATCT--TCACCTG----CGACC--TTTTATCCTC--CTCTGAAGCACCAGTGAGAG--GTTAGAC s dipOrd1.scaffold_38962 9521 61 - 10118 AAAACATTTTACCCTTCCTTTGCC--TTTCTGCTTCTGCTCTGTAGGGCTTGTCAGAG----TTGAC i dipOrd1.scaffold_38962 C 0 C 0 s speTri1.scaffold_86749 12498 55 + 13311 --------TCACCTTTC--TGGCT--CTTGTGCCTTTGCGCAGAATCACTAGTGGGAGGATTCTGGC i speTri1.scaffold_86749 C 0 C 0 s panTro2.chr4_random 3356707 55 + 6711082 GGATCT--TCACCTG----TGACC--TTTCATCCTC--CTCTGAAGCACCAGTGAGAG--GTTAGAC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42340934 57 + 202140232 GGATCT--TCACCTG----TGACCCTTTTTTTCCTC--CTCTGAAGCACCAGTGAGAG--GTTAGAC i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_55763.1-5280 536 972 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=13038.000000 s hg19.chr4_gl000194_random 114307 48 + 191469 CAGAGGGCTGTTCTTTCAAGTGCGCTTCTTATTCATAGGGAACCCTCC s dipOrd1.scaffold_38962 9582 32 - 10118 AA--AGTATCCTCTTTCAA---ACATTGCTAG----------GCTTC- i dipOrd1.scaffold_38962 C 0 C 0 s speTri1.scaffold_86749 12553 47 + 13311 CATGGGTGTAGTTTCTCAATTGGAATTCCTATTCATGGAGCCACTTC- i speTri1.scaffold_86749 C 0 I 379 s otoGar1.scaffold_55763.1-5280 1508 46 - 5280 CAGAGAGGTTTTCTTTCAGATGAAATT-TTATTCATAGGATGTCCAC- i otoGar1.scaffold_55763.1-5280 I 972 C 0 s ponAbe2.chr3 42340991 48 + 202140232 CAGAGGGCTGTTCTTTCAAGTGCGCTTCTTATTCATAGGGAACCCTCC i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3356762 48 + 6711082 CAGAGGGCTGTTCTTTCAAGTGCGCTTCTTATTCGTAGGGAACCCTCC i panTro2.chr4_random C 0 C 0 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=20827.000000 s hg19.chr4_gl000194_random 114355 67 + 191469 CTTTCAAACTTTATAACACACAGTGAAGACTGAAGTACCCTTAAGGCTGAAGACCATTATCCAGTAC s panTro2.chr4_random 3356810 67 + 6711082 TTTTCAAACTTTATAACACACAGTTAAGACTGAAGTACCCTTAAGGCTGAAGACCATCATCCAGTAC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341039 67 + 202140232 CCTTCAAACTTTATAACACACGCTTAAGACTGAAGTACCCTTAAGGCTGAAGACCATCATCCAGTAC i ponAbe2.chr3 C 0 C 0 s otoGar1.scaffold_55763.1-5280 1554 57 - 5280 -TTTAAAACTCTGCAACACCTATTTTATTCTCAAATAAAC---------AAAACCATCATCCAGGAC i otoGar1.scaffold_55763.1-5280 C 0 C 0 s dipOrd1.scaffold_38962 9614 45 - 10118 -------ATTGCTTAACAGA-----AAGAAAAAAAAAAC----------AGGACCATCACACAACAC i dipOrd1.scaffold_38962 C 0 I 22 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e speTri1.scaffold_86749 12600 379 + 13311 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=14976.000000 s hg19.chr4_gl000194_random 114422 47 + 191469 CCTATCTCCCTGGCGGAATCAGTGAGTTC--CTCCATGGAAACTAGGTC s speTri1.scaffold_86749 12979 45 + 13311 CTTATCTCCCTGGTAGACTAATTCA--CT--GTCCCTGGAAACTAGGTC i speTri1.scaffold_86749 I 379 C 0 s otoGar1.scaffold_55763.1-5280 1611 42 - 5280 TCCAATTTACC-------TTAGAGAGTTCAATGTCATGGAAACTGGGTG i otoGar1.scaffold_55763.1-5280 C 0 C 0 s ponAbe2.chr3 42341106 47 + 202140232 CCCACCTCCCTCGCGGAATCAGTGAGTTC--TTCCCTGGAAACTAGGTC i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3356877 47 + 6711082 CCCATCTCCCTCGCGGAATCAGTGAGTTC--CTCCATGGAAACTAGGTC i panTro2.chr4_random C 0 C 0 s dipOrd1.scaffold_38962 9681 20 - 10118 ---------------------------CT--GTTCCTAGTAAAAAGGTC i dipOrd1.scaffold_38962 I 22 C 0 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e turTru1.scaffold_116336 45423 3570 - 166387 I a score=28840.000000 s hg19.chr4_gl000194_random 114469 62 + 191469 TCGTATAAACTTCCATAAA---TGCAATCCAGGAGGACTAGGCAGGTCACACAGTGAAGGAGGGA s panTro2.chr4_random 3356924 62 + 6711082 TCGTATAAACTTCCATAAA---TGCAATCCAGGAGGACTAGGCAGGTCACACAGTGAAGGAGGGA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341153 62 + 202140232 TGGTACAAACTTCCGTAAA---CGCAACCCGGGAGGACTAGGCAGGTCACACAGTGAAGGACGGA i ponAbe2.chr3 C 0 C 0 s otoGar1.scaffold_55763.1-5280 1653 61 - 5280 CTGAATAAATTTCTGCAAC---TGAAACCGGGAGTGGCAGGACAGGCTA-ACAGGTGGCCAGGGA i otoGar1.scaffold_55763.1-5280 C 0 C 0 s speTri1.scaffold_86749 13024 60 + 13311 TTCTATAAATTTCTATAAACTCCTGTAACTAGAGGTGGTAGGCAAGC-----AGTGAAGCTGGAA i speTri1.scaffold_86749 C 0 N 0 s dipOrd1.scaffold_38962 9701 58 - 10118 TTGTACAAACACTTGTGAA---CTAAAGCCAGGAGTACTAAGAAAGCT----AACAATGCAGGAG i dipOrd1.scaffold_38962 C 0 I 3 s turTru1.scaffold_116336 48993 56 - 166387 TTGTGAAAACT---GTAAA---CGAAACCTGG---TGCTCAGCAGGCTACACAGCGCAGGAGGGG i turTru1.scaffold_116336 I 3570 C 0 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I a score=13813.000000 s hg19.chr4_gl000194_random 114531 54 + 191469 ACCAGAAACTTCACTT-GCTAAATAGACACCAGGAAACCCAACTAATACA-AACGC s panTro2.chr4_random 3356986 54 + 6711082 ACCAGAAACTTCACTT-GCTAAATAGACACCGGGAAACTCAACTAATACA-AACGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341215 54 + 202140232 ACCAGAAGCTTCACTT-GCTAAAGAGACACCGGGAAACCCAACTAATAAA-AACGC i ponAbe2.chr3 C 0 C 0 s otoGar1.scaffold_55763.1-5280 1714 35 - 5280 C----AGACTTCCTTA-GCTCAGGATA-ACCAAGAATCCTA--------------- i otoGar1.scaffold_55763.1-5280 C 0 I 2018 s dipOrd1.scaffold_38962 9762 55 - 10118 AGCAGAGACACCTCTAGGAGAAACAGCCAACAAAGAAACCAAAAAAAAAA-ACTGC i dipOrd1.scaffold_38962 I 3 N 0 s turTru1.scaffold_116336 49049 55 - 166387 ACCTGACACCTCACCT-GCTGAAAAGACTCCGAGAGACCCCAGTAACAACTACCAC i turTru1.scaffold_116336 C 0 C 0 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I a score=16070.000000 s hg19.chr4_gl000194_random 114585 49 + 191469 CCAGCTTAAGACTAGAGGCACACGCATTTCGCACTACTCCTCTGGGAAT s ponAbe2.chr3 42341269 49 + 202140232 CCAGTTTAAAACTCCAGGCGCACGCGTTTCGCACTACTCCTCTGGGAAT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3357040 49 + 6711082 CCAGCTTAAGACTAGAGACACACGCATTTCGCACTACTCCTCTGGGAAT i panTro2.chr4_random C 0 C 0 s turTru1.scaffold_116336 49104 43 - 166387 ACAG--TAAGACTC----CTCATGCACTTCACACTGATTCCCCGGGAAT i turTru1.scaffold_116336 C 0 M 1537 e otoGar1.scaffold_55763.1-5280 1749 2018 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I a score=47606.000000 s hg19.chr4_gl000194_random 114634 187 + 191469 GGGGAACGTCTCCCCAGAACTGTGTGTTAGCACGGGGACAGATGGGCAAACTGAGCTACATGAGGGTTGGTAACCGGGTCCCTCAGCGGCAGGACAGGAGCGCGGCCTGCAGACTCCGGGCCCAGGGCCACCAGCCTCGCCTACCCACTCCTGCGCCTCTGGAACCCGCTTCACTGCTGGGACCCCA s ponAbe2.chr3 42341318 187 + 202140232 GGGGAACGTCTCCCGAGAACTGTGTGTTAGCACCGGGACAGATGGGCAAACTGAGCGTCATGCGGGTTGGTAACCGGGTCCCTCAGCGTCAGGGCAGGAGCGTGGCCTGCAGACTCCGGGCCCAGAGCCACCGGCCTCGCCTACCCCCTCCTGCGCCTCTAGAACCCGCTTCAGTGCCGGGACCCCA i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3357089 187 + 6711082 GGGGAACGTCTCCAGAGAACTGTGTGTTAGCACCGGGACACACGGGCAAACTGAGCTACATGAGGGTTGGTAACCGGGTCCCTAAGTGGCAGGACAGGAGCGCGGCCTGCAGACTCCGGGCCCAGGGCCACCAGCCTCGCCTACCCACTCCTGCGCCTCTGGAACCCGCTTCACTGCTGGGACCCCA i panTro2.chr4_random C 0 C 0 e otoGar1.scaffold_55763.1-5280 1749 2018 - 5280 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e turTru1.scaffold_116336 49147 1537 - 166387 M a score=30193.000000 s hg19.chr4_gl000194_random 114821 109 + 191469 CGTCTGTCCTCCCAGCCCCCGCCAGGGTCCACGGCCCGCAAATGCACGTCAGGCCCCTCCTGCCCGCGATGTGCCCACGCGTCTGCCCCCA-CAAATGGGGA-----ACACTGGT s panTro2.chr4_random 3357276 109 + 6711082 CGCCTGTCCTCCCAGCCCCCGCCAGGGTCCACGGCCCGCAAATGCACGTCAGGCCCCTCCTGCCCGCGATGCGCCCACATGTCTGCCCCCA-CAAATGGGGA-----ACACTGGT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341505 110 + 202140232 CGCCTGTCCTTCCAGCCCCCGTCACGGTCCGCGGCGCGCACTTGCACGTCAGGCCCCGCCCGCCCGCGATGCGCCCAACCTTCTGCTCCCACCAACTGGGGA-----ACACCGGT i ponAbe2.chr3 C 0 C 0 s speTri1.scaffold_112527 174812 97 + 179654 CGTCCCTTTCCGCAGCCCCCG-----------GGCTGGCACCGTCACGGCCGGACCCTGAGATCCGCGGGACGTTTCTG-ATCTCCCCCTA-GTAACAAGAC-----ACCCCCTC i speTri1.scaffold_112527 N 0 I 545 s otoGar1.scaffold_98849.1-143450 25440 97 + 143450 -------CTTCCCAACACTGGCCCAGGTCTGCGGCACGCACCTGCACGCCAGGCCTCGCTCGCCTCTGAT----------CTAAGCTACTC-TAAGTGGGGAGAGGGGCACTCGT i otoGar1.scaffold_98849.1-143450 n 2018 C 0 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e turTru1.scaffold_116336 49147 1537 - 166387 M a score=32375.000000 s hg19.chr4_gl000194_random 114930 117 + 191469 CTGGCCCCCCGGGATCCCCCGAGGCCCACAGGTTCC-TCTTCGCCCTCGCACCTACCCACAGGGACATAGAACCAAGCCCCAGGGCTGCTCAGCTACACGACCGCCGCTGGGATCCGC s otoGar1.scaffold_98849.1-143450 25537 93 + 143450 CCTGTCCCCTAGGGTCCCCAGAAACCCACAGGCTCCTTTTTCAGCCGCGCCCCTACTT-CAGTTACCTA-----AAATCCCAAAACAACAAGGT--CAAGA----------------- i otoGar1.scaffold_98849.1-143450 C 0 n 0 s ponAbe2.chr3 42341615 117 + 202140232 CCGGTCCCCCGGGATCCCCCGAGGCCCACGGGTTCC-TCTTCGCCCTCGCACCCACCCGCAGGGACATAGAACCAAGCCCCAGGACTGCCCAGCTGCAGGAGGCCCTCTGGGTTCCGC i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3357385 117 + 6711082 CTGGCCCCCCGGGATCCCCCGAGGCCCACAGGTTCC-TCTTCGCCCTCGCACCTACCCACAGGGACATAGAACCAAGCCCCAGGCCTGCTCAGCTACAGGACCACCGCTGGGATCCGC i panTro2.chr4_random C 0 C 0 e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e speTri1.scaffold_112527 174909 545 + 179654 I e turTru1.scaffold_116336 49147 1537 - 166387 M a score=19695.000000 s hg19.chr4_gl000194_random 115047 73 + 191469 ACTTCCGGAGGAAAATGGCGAAGTGGGCGGGGCGGCGCATGCGCAGAGAGAAAAGCTGGTTCCCAAGGTCCTT s panTro2.chr4_random 3357502 73 + 6711082 ACTTCCGGAGGAAAATGGCGAAGTGGGCGGGGCGGCGCATGCGCAGAGAGAAAAGCTGGTTCCCAAGGTCCTT i panTro2.chr4_random C 0 I 935 s ponAbe2.chr3 42341732 73 + 202140232 ACTTCCGGAGGAAAATGGCGGAGTGGGTGGGGCGGCGCATGCGCAGAGAGAAAAGCGGGCTCCCAAAGTCCTT i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e speTri1.scaffold_112527 174909 545 + 179654 I e turTru1.scaffold_116336 49147 1537 - 166387 M a score=12685.000000 s hg19.chr4_gl000194_random 115120 49 + 191469 GATGGTAACATCATTGGAAGGTGACACTACATTTCCTATGAGGCTCTGC s panTro2.chr4_random 3358510 49 + 6711082 GATGGTAACATCATTGGAAGGTGACACTACATTTCCTATGAGGCTCTGC i panTro2.chr4_random I 935 C 0 s ponAbe2.chr3 42341805 48 + 202140232 GATGGTAACATCATTGGAAGGTGACACTACA-TTCCCATGAGGCTCTGC i ponAbe2.chr3 C 0 C 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e micMur1.scaffold_18511 620 2837 + 43889 I e ochPri2.scaffold_3373 75600 944 + 168054 I e speTri1.scaffold_112527 174909 545 + 179654 I e turTru1.scaffold_116336 49147 1537 - 166387 M a score=7414.000000 s hg19.chr4_gl000194_random 115169 36 + 191469 GGTCCCCCGTTAGG----AACGCACGCCGGACATTCTGTT s ochPri2.scaffold_3373 76544 39 + 168054 GCCCCTTTGTTAGGCAACGAAGCGGGTAGGAT-TTCAGTG i ochPri2.scaffold_3373 I 944 I 1 s panTro2.chr4_random 3358559 36 + 6711082 GGTCCCCTGTTAGG----AACGCACGCCGGACATTCTGTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341853 36 + 202140232 GGTCCCCCGTTAGG----AACGCACCCCGGACATTCTATT i ponAbe2.chr3 C 0 C 0 s turTru1.scaffold_116336 50689 12 - 166387 ----------------------------GGACGTTTTGTG i turTru1.scaffold_116336 M 1537 C 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e micMur1.scaffold_18511 620 2837 + 43889 I e speTri1.scaffold_112527 174909 545 + 179654 I a score=32307.000000 s hg19.chr4_gl000194_random 115205 81 + 191469 --TTTCCCAGCAG--TGAGTCCAGTTACC------CGGAGACCCGGACTTAATGGATCAGGACTGGTCCCTACCCACGTGACACAGATGTG s panTro2.chr4_random 3358595 81 + 6711082 --TTGCCCAGCAG--TGAGTCCAGTTACC------TGGAGACCCGGACTTAATGGATCAGGACTGGTCCCTACCCACGTGACACAGATGTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341889 81 + 202140232 --TTGCCCAGCAG--TGAGTCCGGTTACC------CGGAGACCCGGACTTAATGGATCAGGACTGGTCCCTACCCACGTGACACAGATGTG i ponAbe2.chr3 C 0 C 0 s micMur1.scaffold_18511 3457 62 + 43889 --TTCCGCAGCAG--GAAGTCCTGTTACC------AGGAGACCCGGCCCTGAGGGG-------------------ACGCGACAGAGATGCG i micMur1.scaffold_18511 I 2837 I 110 s ochPri2.scaffold_3373 76584 81 + 168054 --TTGCTAAGGGGGCCTGCTCCAGCTGTCGCTGTGTGGAGACGAGGTGTGAAAGGAGAACTGGCGGTTTTTGCCTGTGTGACA-------- i ochPri2.scaffold_3373 I 1 N 0 s turTru1.scaffold_116336 50701 82 - 166387 TATCGAGGGGTAA--TGGGTCTTGCTGCC------CTGAGCCCCGGATGTGATGGATGAGACTGTGTCTCGACCCACGTGCCACC-ACGTG i turTru1.scaffold_116336 C 0 C 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e speTri1.scaffold_112527 174909 545 + 179654 I a score=35133.000000 s hg19.chr4_gl000194_random 115286 108 + 191469 GCATTCTGGTTCGTTATTAAATCCTGGTTTCACAGCCT----GGGACATTGTGAAAATAATGGAGAAATTCCAATAGAAACCAATTGGTCTATGCTGTTAATGAGTAACttt s panTro2.chr4_random 3358676 108 + 6711082 GCATTCTGGTTCGTTATTAAATCCTGGTTTCACAGCCT----GGGACATTGTGAAAATAATGGAGAAATTCCAATAGAAACCAATTGGTCTATGCTGTTAATGAGTAACttt i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42341970 108 + 202140232 GCATTCTGGGTCTTTATTAAATCCTGGTTTCACAGCCT----GGGACATTGTGAAAATAATGGAGAAATTCCAATAGAGGCCAATTGGTCTATGTTATTAATGAGTAACttt i ponAbe2.chr3 C 0 C 0 s turTru1.scaffold_116336 50783 84 - 166387 GAATTCTGGTTTGTTATTAAGTCCTAGTTTAAGAAACTGAAAGAGATGTTGTGAGACGAATGGGTAAATTCTTATGGGGGCCGA---------------------------- i turTru1.scaffold_116336 C 0 N 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e micMur1.scaffold_18511 3519 110 + 43889 I e speTri1.scaffold_112527 174909 545 + 179654 I a score=26288.000000 s hg19.chr4_gl000194_random 115394 123 + 191469 ttttttttttgagatggagtctcgc---tctgtcacccaggctggagtgcaatggtgcgatct-tggctcactgcaaactctgcctcccaggttcaagagattctcctgcctcaacctcctgagtat s panTro2.chr4_random 3358784 121 + 6711082 tttttttt--gagatggagtctcgc---tctgtcacccaggctggagtgcaatggtgcgatct-tggctcactgcaaactctgcctcccaggttcaagagattctcctgcctcagcctcctgagtat i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42342078 123 + 202140232 ttttttttttgagatggagtctcgc---tctctcgcccaggctggagtgcaatggcgcgatat-cggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtag i ponAbe2.chr3 C 0 C 0 s micMur1.scaffold_18511 3629 107 + 43889 CTAGAATTCTGATATAG-GTGTCGCTGTTCTGGAACCCACGTCTGTTTTTAAT-ATGCGTTCTAAAGCATGAAAAAAATCATGTCTCT---ggccaggcggtgctcacgcct--------------- i micMur1.scaffold_18511 I 110 I 306 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e speTri1.scaffold_112527 174909 545 + 179654 I a score=28140.000000 s hg19.chr4_gl000194_random 115517 152 + 191469 ctgggattacaggcgggcgccaccacacttgcctaatttttgtatttttagtagaaacggggtttcaccatgttggtcaggctggtctctaactcctaacctcgtaatccgccctcctaggcctcccaaagtgctgggattacaggcgtgag s ponAbe2.chr3 42342201 152 + 202140232 ctgggattacaggcgcgcgccaccacacccacctaatttttgtacttttagtagagacggggtttcaccaagttgatcaggctggtctcaaactcctgaccttgtgatccgccctccttgaccttccaaagtgctgggattacaggcgtgag i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3358905 152 + 6711082 ctgagattacaggcgggtgccaccacactcgcctaatttttgtatttttagtagaggcgggttttcaccatgttggtcaggcttgtctcgaactcctgacctcgtgatctgccctcctcggcctcccaaagtgctgggattacaggcgtgag i panTro2.chr4_random C 0 C 0 s speTri1.scaffold_112527 175454 50 + 179654 CTgggattggggctcagtgatagagcccttgcctggcacgtgt---------------------------------------------------------------------------------------------------taggcac--- i speTri1.scaffold_112527 I 545 I 513 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e micMur1.scaffold_18511 3736 306 + 43889 I a score=8317.000000 s hg19.chr4_gl000194_random 115669 35 + 191469 ccaccgcgcccagccCTCAAGTCTATTTTTTATAG s ponAbe2.chr3 42342353 35 + 202140232 ccaccgcgcctggccCTCAAGTCTATTTTTCATAG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3359057 35 + 6711082 ccaccgtacccagccCTCAAGTGTATTTTTTATAG i panTro2.chr4_random C 0 C 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e micMur1.scaffold_18511 3736 306 + 43889 I e speTri1.scaffold_112527 175504 513 + 179654 I a score=88152.000000 s hg19.chr4_gl000194_random 115704 248 + 191469 ATGCATTC-AAAAGCATGAAAAAAATCATGTCTCTATTTTACTTTAAATTTTTAAAAACACAACTAATGAATATGGTAATTCTCTTCCAATCTGTT-----ATCTTTTCTCTCAC----GAAACTAATTTGTGAGCTTTCAAT--------TTACACAGTTAGAAAAAAATGCTCTAGTGTATATACTAGGATAAAATATCAGGGTCATAAGACAAGTGCACTCCATAATCTTTGTGACAACTTACACTTCCAGTGTCTGATGAAC-- s panTro2.chr4_random 3359092 248 + 6711082 ATGCATTC-GAAAGCATGAAAAAAATCATGTCTCTATTTTACTTTAAATTTTTAAAATCACAACTAATGAATATGGTAATTCTCTTCCAATCTGTT-----ATCTTTTCTCTCAC----TAAACTAATTTGTGAGCTTTCAAT--------TTACACAGTTAGAAAAAAATGCTCTAGTGTATATACTAGGATAAAATAACAGGGTCATAAGACAAGTGCACTCCATAATCTTTGTGACAACTTACACTTCCAATGTCTGATGAAC-- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42342388 246 + 202140232 ATGCATTC-GAAAGCATGAAAAAAATCATGTCTCTATTTTACTTTAAATTTTTAAAAACACAACTAATGAATATGGTAATTCTCTTCCAATCCGTT-----ATCTTTTCTCTCAT----CAAGCTAATTTGTGAGCCTTCAATAGATTATATTACACAG-----AAAAAATGCTCTAGTGTATATACTAGGATAAAATAACAGAGTCATAAGACAGG-----GTCATAATCTTTGTGACAGCTTACACTTCCAGTGTCTGATAAAT-- i ponAbe2.chr3 C 0 C 0 s micMur1.scaffold_18511 4042 260 + 43889 ctgtgttcaaaaaaaaaaaaaaaaaTCATGTCTCTGTTTTGCTTTAGATTTGTTA----ACAATAAATTAATATGGCAACTCTCTTCCAACCGATTAAAAGATATTTGTCCTCACCCCGTGTGCTAATTTGTGAGTTTTCATGATACTATATTTTACAGTT---GGAGACTGCTCTACTGTATATACTGGAATAAAGTAGCAGGATCAT-AGGTAGATGCACTCCATAATCCTTGTGCCAATTTACACTTCAAATGTCTGATAATAAA i micMur1.scaffold_18511 I 306 C 0 e otoGar1.scaffold_98849.1-143450 25630 0 + 143450 I e speTri1.scaffold_112527 175504 513 + 179654 I a score=99775.000000 s hg19.chr4_gl000194_random 115952 259 + 191469 ATTTGCCCATAAACTCCCA----------------CGTTT------CATCCATCCATCC----ATCAATCA----AATCT--ACCTATCTTTATTTATTTATT-GTGCGAAATACCTGA--ACTTTGCCTTTCCTTCCCTGATTTCTGCCACAAACTAGGCAAGGAGTTCTGCCTAGGGGTTTTTCAGAGCTTCGGTTACCACCGAGGTTCCT-----AACAGGGAAATTCCCAGCTTGAATGCTTGGGGTTGATGTGGGAGTGC-GTGTGAAACG-GGTGTGGGGTGAAAGGACAGTGAA s otoGar1.scaffold_55763.1-5280 3767 263 - 5280 ATTTTCCCAGGAACTCCC-----------------CACCT-TCCATCAAC--CCCTGCA----ATTTATGA----AGTCTTGACAGATTCTATTTTATTTATTATTAACAAGACCTTAATTACTGCTCTCTTCCCCCCCCCCCATCTGTTATATAATAGGCAAAGCATTTCCTGAAGGGGTCTTTCAGAGCTCCTCCTAGTTCT---GCTCCTTT-------GGAAAATTCCTGGCTTCCATTGCCTGGGGTAATTAGGGTTTTCAGTGTGTGGTACAGTCCGGGGTAAAAGGGGGTTGAA i otoGar1.scaffold_55763.1-5280 I 2018 I 198 s micMur1.scaffold_18511 4302 291 + 43889 -ATTTGACAGAGACTCTCAAGatccatgcatccatcatctgtccatcatccacccatct----atttattaatccaATCTTTA---GTTATTTGTTGTTTGTTTGTGAAATGTGCCTGG--ACTTTGCCCTTTCTTCCCTGATTTTTGCCACAAACTAGGCAAGGAGTTCTGCATAGCAGTTTCTCAGAGCTTCCACTACCACTGAAGTTCCTCTTCAGACAGGGAAATGCCCAACTGCAGATATCAGGGTTGACTTGGACTTGGATGGTGGAATGGGGGGTGGGGTGAAAGGGGAGTGAA i micMur1.scaffold_18511 C 0 C 0 s ponAbe2.chr3 42342634 262 + 202140232 ATTTGCCCATCAACTCCCA----------------CATTT------CATCCATCCATCCACCAATCAATCA----AATCT--ACCTATCTTTATTTATTTATT-GTGAGAAAGACCTGA--ACTTTGCCTTTCGTTCCCTGATTTCTGCCACAAACTAGGCAAGGAGTTCTGCCTAGGGGTTTCTCAGAGCTCCGGCTACCACCGAGGTTCCT-----AACCGGGAAA-CGCCGGCTTGAATGCTCAGGGTTGATGTGGGGGTGC-GTGTGAAATG-GGGGTGGGGTGAAAGGGCAGTGAA i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3359340 259 + 6711082 ATTTGCCCATAAACTCCCA----------------CATTT------CATCCATCCATCC----ATCAATCA----AATCT--ACCTATCTTTATTTATTTATT-GTGCAAAATACCTGA--ACTTTGCCTTTCTTTCCCTGACTTCTGCCACAAACTAAGCAAGGAGTTCTGCCTAGGGGTTTTTCAGAGCTCCGGCTACCACCGAGGTTCCT-----AACAGGGAAATTGCCAGCTTAAATGCTTGGGGTTGATGTGGGAGTGC-GTGTGAAACG-GGTGTGGGGTGAAAGGGCAGTGAA i panTro2.chr4_random C 0 C 0 e speTri1.scaffold_112527 175504 513 + 179654 I a score=11198.000000 s hg19.chr4_gl000194_random 116211 34 + 191469 ATTTGTAGGTGGGTAGAT-GGGGGTGTGAAGGGCT s panTro2.chr4_random 3359599 34 + 6711082 CTTTGTAGGTGGGTAGAT-GGGGGTGTGAAGGGCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42342896 34 + 202140232 GTTTGTAGGTGGGCAGAT-GGGGATGTGAAGGGCT i ponAbe2.chr3 C 0 C 0 s micMur1.scaffold_18511 4593 33 + 43889 GTTTG--AGGGGGTGGATAGAGGGAATGAGAGGCT i micMur1.scaffold_18511 C 0 C 0 s speTri1.scaffold_112527 176017 30 + 179654 GCTTGGCAGTTGGGGGAC-AGCGATGTGAGA---- i speTri1.scaffold_112527 I 513 N 0 e otoGar1.scaffold_55763.1-5280 4030 198 - 5280 I a score=19716.000000 s hg19.chr4_gl000194_random 116245 76 + 191469 TTCAGGTAAGAGGCACAGAGgaaactgggagaggcagcgaaagcacttcatacctcagataaccagaagatgctcc s ponAbe2.chr3 42342930 76 + 202140232 TTCAGGTAAGAGGCACGTAGgaaactgggagaggcagcgaaagcacctcacgcctcagatcaccagaagatgctcc i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3359633 76 + 6711082 TTCAGGTAAGAGGCACAGAGgaaactgggagaggcagcgaaagcacttcatgtctcagatcaccagaagatgctcc i panTro2.chr4_random C 0 C 0 e otoGar1.scaffold_55763.1-5280 4030 198 - 5280 I e micMur1.scaffold_18511 4626 0 + 43889 C a score=35780.000000 s hg19.chr4_gl000194_random 116321 141 + 191469 caccagcgccatgacagtttgccagt--gccatggcaacacaggaagtccccaccccttgccatggaaacagctggaagttactgcccatttctagctatttctgagtaacccgccccttaattagcat-gtcattaaaagtga s ponAbe2.chr3 42343006 141 + 202140232 caccagcgccgtgacagtttgccaac--gccatggcagcacgggaagtccccaccccttgccatgggaacagctggaagttactgcccatttctagctatttctgaataacccgccctttaattagcat-gctactaaaagtga i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3359709 141 + 6711082 caccagagccgtgacagtttgccagt--gccatggcagcacaggaagtccccaccccttgccatggaaacagctggaagttactgcccatttctagctatttctgagtaacccgccccttaattagcat-gtcattaaaagtga i panTro2.chr4_random C 0 C 0 s tupBel1.scaffold_66899.1-13400 9551 101 + 13400 CACCAGCTTCATGAC--TTTCACATTCAGCCATG------TGGGAGCCCAGTATTTTTAACCAC------------------CAGTCCACCTGTAG-----------------GCCCCAAAATGCCCATCGTGATTAATAGGGA i tupBel1.scaffold_66899.1-13400 N 0 N 0 e otoGar1.scaffold_55763.1-5280 4030 198 - 5280 I e micMur1.scaffold_18511 4626 0 + 43889 C a score=49383.000000 s hg19.chr4_gl000194_random 116462 192 + 191469 attataaaaatgactacaagccacccctaggctgctactctgggagcacaacccacagagggctccctgccctgcaggagtggacgcagggctgtaacaccgccaatgcctccatagagctgctttattccaccacaggcttgcttttggattccttcctgagcgacgccaagaacctgcccTTCCTCAGTG s ponAbe2.chr3 42343147 191 + 202140232 attataaaaatgactgcaagccacccc-aggctgctactctgggagaacaacccacggagggctccctgccctgcaggagcagacgcagggctgttacaccgccagtgcctccgtagagctactttcttccaccagaggcttgcttttgaattccttcctgagcgaggccaagaacctgcccTTCCTCAGTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3359850 192 + 6711082 attataaaaatgactacaagccacccctaggctgctactctgggagcacaacccacggagggctccctgccctgcaggagcagacgcagggctgtaacaccgccaatgactccatagagctgctttattccaccacaggcttgcttttggattccttcctgagcgacaccaagaacctgcccTTCCTCAGTG i panTro2.chr4_random C 0 C 0 e otoGar1.scaffold_55763.1-5280 4030 198 - 5280 I e micMur1.scaffold_18511 4626 0 + 43889 C a score=89054.000000 s hg19.chr4_gl000194_random 116654 171 + 191469 TGACTCTTGCCTAAAATCTATCCCT-GGTTTTCTCTTTTCCTAA-GCATGCCCTGACTTGTTC---TTTC---ATCTCCTCTGAACTTGCAATTGCTCCTCAGTGACTC----TATTCTGCAGATCCAGAAAACTCAACCTTAATCTTCCCAGAGCCCTGTTGTCTCCAATATTGGAAACTCT s otoGar1.scaffold_55763.1-5280 4228 156 - 5280 TGACTCTTTCTCAAAATCTATCCTT---TGCTTTTTTTCCCTAATACGTGCCCTG-TTTGTTCAAATTCCAGTATCTTCTGTGTTCCAAAAATTACCATTCAGTGACTT------TTCTGTAGATCAAGGGAACTCAACATCGATCTCCTCAGATCCCTGT-----------------TCCCT i otoGar1.scaffold_55763.1-5280 I 198 C 0 s micMur1.scaffold_18511 4626 183 + 43889 TGACTCTCGCCCAAGACCTGTCCCCTGGTGTTCTCTTTTCCTAATGTATGCCCTGCCTTGTTCAAATTCCTCTGTGTTCTCTGATCCTATAATTGCCCCTCAGTAACTCACTTCATTTGGCAGATACAGGAAACTCAGCCTTGACCTTCCCAGAGCTCTCTTGCCCTAAACTTTGGAATCCCT i micMur1.scaffold_18511 C 0 C 0 s ponAbe2.chr3 42343338 171 + 202140232 TGACTCTTGCCTAAAACCTATCCCT-GGTTTTCTCTTTTCCTAA-GCATGCCCTGACTTGTTC---TTTC---ATCTTCTCTGATCTTGCGATTGCTCCTCAGTGACTC----TATTCTGCAGATCCAGAAAACTCAACCTTAATCTTCCCAGAGCCGTGTTGTCTCCAATATTGGAATCTCT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3360042 171 + 6711082 TGACTCTTGCCTAAAACCTATCCCT-GGTTTACTCTTTTCTTGA-GCATGCCCTGACTTGTTC---TTTC---ATCTCCTCTGAACTTGCAATTGCTCCTCAGTGACTC----TATTCTGCAGATCCAGAAAACTCATCCTTAACCTTCCCAGAGCCCTGTTGTCTCCAATATTGGAATCTCT i panTro2.chr4_random C 0 C 0 a score=18757.000000 s hg19.chr4_gl000194_random 116825 32 + 191469 AGCCTTGCTTTCTC------AGATGCCTAGATTACAGG s panTro2.chr4_random 3360213 32 + 6711082 AGCCTTGCTTTCTC------AGACACCTAGATTACAGG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42343509 32 + 202140232 AGCCTTGCTTTCTC------GGACGCCTGGATTACAGG i ponAbe2.chr3 C 0 C 0 s micMur1.scaffold_18511 4809 32 + 43889 AGCTTCCCTTCCTC------AGGCACCTGGATCCCAGG i micMur1.scaffold_18511 C 0 C 0 s otoGar1.scaffold_55763.1-5280 4384 32 - 5280 AGCCTCACTTCCTC------AGAGTTCTGAATCACAGG i otoGar1.scaffold_55763.1-5280 C 0 C 0 s dipOrd1.scaffold_23014 8143 31 + 21700 AGTCTCCCTCTCTCTTATCAGAGAACCTACA------- i dipOrd1.scaffold_23014 N 0 N 0 a score=30514.000000 s hg19.chr4_gl000194_random 116857 55 + 191469 CCTCTCTCTTGAACACCTATTGGTAAGATATCCGGGGATCCTTTAAA-TACACGAT s panTro2.chr4_random 3360245 55 + 6711082 CCTCTCTCTTGAACACCTAGTGGTAAGGTATCTGGGGATCCTTTAAA-TACACAAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42343541 55 + 202140232 CCTCTCTCTTGAACACCTATTGGTATGGTATCTGGGGATCTTTTAAA-TACGTGAT i ponAbe2.chr3 C 0 C 0 s micMur1.scaffold_18511 4841 55 + 43889 CCTCTTTTTTAAACATATATTGTGATGTTATCTGGGAATCCTCTAAA-TACAGGAT i micMur1.scaffold_18511 C 0 N 0 s otoGar1.scaffold_55763.1-5280 4416 56 - 5280 GCTCTGTCTTAAATAGGTATTAATATGATACTTGATGATCCTTTAAATTACAGGAT i otoGar1.scaffold_55763.1-5280 C 0 C 0 a score=301785.000000 s hg19.chr4_gl000194_random 116912 1008 + 191469 GATTGGCAGGGTTTACATAGGGGAAATCAGTGCCTGACAATTCGCCTTCCAGGATATGGATTgtcattccctctctttgtgggccccagtctcctatacataaaagtagagattataatactcatttgact-tgcagatacctcacCCCGAACCCACCTACTATAATGTAAAAGCCAAGAATGCAAACCCTTTCCTCACCCCGTGAAGGTAAAATCCTCAGAGCCAAGGAGAGAAGGCTCAGGGATGGTACCTGGGTGTTTCCAACACTAACCatgcattgtagtttttagtgttcaagtttaagctt-cttatgttaaagt----------taccccagctttaattatattgtaacaagatttattt-ttgtaattccatttttggattcttgatttcttggtaaagaaatacagtt-atttttgtataccaatcttatatagtgttacattccaaaatttgttcatgagtcctaacactttttagtaaatttctt--atgattttctaaatgcaagatcatgtcatctgtacataaagataactgtacttcttcctttccaatctagatgccgtttatttatttacattaccaagttgtcccagctaCCACtgttatcaagtaaaagggtctcactgcccaaagctctagaagccagtaacatgacactgagtttttgagaagagaaaaactttaaagtcaaaccAAAACCTATGGGATACAggccaggcgcagtggctcatgcctgtaatcccagcactttgggaggccgagtcgggtggatcac--aaggtcaggagatcaagaccgtcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaacaaaaattagctgggcatggtggcgggcacctgtagtcccagctactcaa----ctgaggcgggagaatggcatgaacccagaaggcagagcttgtagtaagccaagattgcaccactgcactccagcctgggcaacagagagaaactccgtctcc-aaaaataaacaaaaa s panTro2.chr4_random 3360300 1009 + 6711082 GATTGGCAGGGGTTACATAGGGGAAATCAGTGCCTGACAATTCGCCTTCCAGGATATGGATTGTCATTCCCTCTCTTTGTCGGCCCCAGTCTCCTATACATAAAAGTAGAGATTGTAATACTCATTTGACT-TGCAGATACCTCACCCCGAACCCACCTACAATAATGTAAAAGCCAAGAATGCAAACCCTTTCCTCACCCCGTGAAGGTAAAGTCCTCAGAGCCAAGGAGAGAAGGCTCAGGGATGGTACCTGGGTGTTTCCAACACTaaccatgcattgtagtttttagtgttcaagtttaagctt-cttatgttaaagt----------taccccagctttaattctattgtaacaagatttattt-ttgtaattccatttttggattcttgatttcttggtaaagaaatacagtt-atttttgtataccaatcttatatagtgttacattcctaaatttgttcatgagtcctaacactttttagtaaatttctt--atgattttctaaatgcaagatcatgtcatctgtacataaagataaatgtgcttcttcctttccaatctagatgccgtttatttatttacgttgccaagttgtcccagctaCCACtgttatcaagtaaaagggtctcactgcccaaagcactagaagccagtaccatgacactgagtttttgagaagagaaaaactttaaagtcaaaccAAAACCTATGGGATACAggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaagtcgggtggatcac--gatgtcaggagatcaagaccatcttggctaacacggtgaaaccccgtctctactaaaaatacaaaaaacaaaaattagccgggcatggtggcgggcacctgtagtcccagctactcgg----ctgaggcgggagaatggcatgaacccagaaggcagagcttgtagtaagccaagattgcaccactgcactccagcctgggcaacagagagagactccgtctccaaaaaaaaaacaaaaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42343596 967 + 202140232 GATTGGCAGGGGTTACATAGGGGAAATCAGTGCCTGACAATTCGCCTTCCAGGATGTGGACTGTCATTCCCTCTCTTTGTGGGCCTCAGTCTCTTATCCATAAAAGTAGAGATTGTAATACTCATTTGAAT-TGCAGATACCTCACCCCAAACCCACCTAATATAATGTAAAAGCCAAAAATGCAACCCCTGTCCTCACCCCGTGAAGGTAAAGTCCTCAGAGCCAAGGAGAGAAGGCTCAGGGATGGTACCCGGGTGTTTCCAACACTAACCGtgtattgtagtttttagtgttcaagtttaagctt--------------------------ccccagctttaattctattgtaacaagatttattt-ttataattccatttttggattcttgattgcttggtaaagaaatacaatt-atttttgtataccaatcttgtatagtgttacattcctaaatttgttcatgagtcctaatactttttagtaaatttctt--at-attttctaagtacaagatcatgtcatctgtacataaagataactgtacttcttcctttccagtctagatgccgtttatttatttacgttgccaagttgtcccagctaTCACTGTTATCAAG--------------tgcccaaagcactagaagctggtaacgtgacactgagtttttgagaaaagaaaaactttaaagtcaaaccAAAATCTATGGGATACAggccgggtgcagtggctcatgcctgtaatcccagaactttgggaggccgaggtgggtggatcac--aaggtcaggagatcgagaccatcctggctaacgcgatgaaaccccatctctactaaaaatacaaaaaacaaaaattagccgggcgtggtggtgggcgtctgtagtcccagctactcgggagtctaaggtgggagaatggcgtgaacctgggaggcggagcttgcagtgagctgagatcctgccactgcactccagcctgggtgacagagcaaggctccgtctca---------------- i ponAbe2.chr3 C 0 C 0 s otoGar1.scaffold_55763.1-5280 4472 799 - 5280 GATTGGCAAGGGTTG-GTTGGGGGAATCAATGCCGGATGTTCTGGCCTCTAGGAAATAGATTATGAATTCTTCTCATCATGGCCCTCAGTCATTTATCCATAAAAGTGTGAAGACTAATACACAATTAGCTGTGTAGA---ATCTCCATGAATCCCCCTCTAATAATAC-AAGGCCAGAAATGCCATCCCTTTCCTCTTTCTATGAAGGTAAAATCTGAAGAGCTGAGGAGGACAGCATCAGGGCTTACATCTGAATGTCTCCAACACTAACCATATATAGTAA-tttcagtagtcaaattta--cttgtttttgttagggttatttctaagtattttgcttttaatatttttgtaactagaatagtttacttaaatttcatttgggggttgttaccgcttctgctccaaaatacaattgatttttgtatattgatcttgcatcctggtgcttcctttaattgttttattagttctaatagtttttagtgaattttgtaaatgattttctaaacacaagatta----------------------------------------------------------------------------------------------------------------------------------------------------tgAGTAT-----------------------------------------------ggctgggcatggtggctcacatctgtaatcctagcactttggaaagctgaggtgggtggattgcttgagctcaggagtttgggaccaaccttagtaaga--gccagacctcctctct-------------------aaaaatagccaggcattgtggcaggtgtctatagtctcagctacttgagaggctaaggcaagaggatggctggagcccaagagtttgaggtttctgtgcactatgat---gccatggctctctaccaaaggcaacaaagtgagac----tatct-aaaaaaaaaaaaaaa i otoGar1.scaffold_55763.1-5280 C 0 N 0 a score=96911.000000 s hg19.chr4_gl000194_random 117920 399 + 191469 caaaaaaacaaaaaACaaacctatgggatacagtaaaaacagtactaaggagtaagtttatagctaaaagcacctacatc-aaagaaagtagaaaaacttcaaataaacaacctaataatgcatcttaaatagttagaaaagcaagagcaaaccaaaaccaaaattagtagaaggaaacataacaaagatcagagcagaaataaatgaaattgaaatttaaaaatataaaatatcaatgaaatgaaaagttaatatttttttaaaagatcaacaaaatcaacaaacatttagccatactaagagaaaagagagaagactcaaatacataaaaccagagattaaaaaggagacactgcaactgatactgcagaaattcaagtaatcattagaaactattat s panTro2.chr4_random 3361309 395 + 6711082 c--aaaaacaaaaaacaaacctatgggatacagtaaaaacagtactaaggagtaagtttatagcaaaaagcacctacatc-aaaaaaagtagaaaaacttcaaataaacaacctaataatgcatcttaaatagttagaaaagcaagagcaaaccaaaaccaaaattagtagaaggaaac--aacaaagatcagagcagaaataaatgaaattgaaatttaaaaatataaaatatcaatgaaatgaaaagttaatatttttttaaaagatcaacaaaatcaacaaacatttagccagactaagagaaaagagagaagactcaaatacataaaaacagagattaaaaaggagacactgcaactgatactgcagaaattcaagtaatcattagaaactattat i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42344563 394 + 202140232 ---aaagaaaaaaaaaaaacctatgggatacagtaaaaacagtactaaggggaaactttacagcaaaaaacatctacatcaaaaaaaagtagaaaaacttcaaa-aaaaaacctaataatgcatcttaaataattagaaaagcaagagcaaaccgaaaccaaaattagcagaaggaaacatagtaaagatcagagcagaaataaatgaaattgaaatttaaaaatataaaatatcaatgaaatgaaaagttaata--tttttaaaagaccaacaaaatcaacaaatgtttagccagactaagaaaaaagagtgaagactcaaatacataaaaccagagattaaaaaggaaacactacaactgatactgcggaaattcaaagaatcattagaaactattat i ponAbe2.chr3 C 0 I 1473 a score=46388.000000 s hg19.chr4_gl000194_random 118319 567 + 191469 gaccaactatattccaataaattgaaaaacctgcaagtaatggccaggtaccgtggttcattcctgtaatcccaacactttgggaagccaaggcaggtgatcacctgagatcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcatgcacctgtactcccagctactccagaggctgaggcaggagaatcgcttgaacctgggaggcagaagttgcagtgagctgagattgtaccaagctccatcctgggtgacagagcaagactccatcctgggtgacagagcaagactccatctc---aaaaaaaaaaaaaaaaaaaaacaacacaaccaaaccacaaacctagaagaactggataaatgagattgaacccataataaaacatctcctagcaaagaaaagcctggatccaatggcttcactgattaattttaccaaacattgaaggaagaattactatcaatcctactcaaactattccaaaaaacagagaagtctgtaatatttccaaaatcattctatg s panTro2.chr4_random 3361704 539 + 6711082 gaccaactatattccaataaattgaaaaacctgcaagtaatggccaggcaccgtggctcatgcctgtaatcccaacactttgggaagccaaggcaggtgatcacctgagatcaggagttcaagaacagcctggccaacatggtgaaacccaatcactactaaaaatacaaaaattagccaggcatggtggcgtgcacctgtactcccagctactccagaggctgaggcaggagaatcacttgaacctgggaggcagaagctgcagtgagctgagattgtaccaagctccatcctgggtgac-------------------------------agactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaccacaaacctagaagaactggataaatgagattgaacccataataaaacatctcatagcaaagaaaagcctggatccaatggcttcactgattaattttaccaaacattgaaggaagaattactaccaatcctactcaaactattccaaaaaacagagaagtctgtagtatttccaaaatcattctatg i panTro2.chr4_random C 0 C 0 e ponAbe2.chr3 42344957 1473 + 202140232 I a score=448714.000000 s hg19.chr4_gl000194_random 118886 1827 + 191469 aaaaagaccattcatcttgtctaagtgggattcatcccaaggatgccaacatggttcaacatatgcaaatcaatcaatgtgacacatcatatcaacagaatgaaggacaaaaaacatatggtaatttcaattgatgctgaaaagcatttaataaaatccaacttccctgtgataaaaagaaaccccc-aaaaaaactagatttagaaggaacataccacaacacaataaaaaccatatgcaacaaaccctcagccagtatcatcctgaacagagataaactgaaagcctttcttctaagatctggaacaaggcaagaatgtccacttccaacaatgttactcaacatagtactggaagtcctagctagagcaatcaagaaaattgaaaaacagtaaagggcatccaaatt-taaagaaataaaattattattgttttcttgtttgcaggtgatttgatcttatatttggaaaaacctaagaactccaccaaaaaactatcagaactgatcaacaaattcagagtcacacgatacaaaatcaaaatgcaaaaatcagtaacatttctaaatgtcaaaactgaacaatctaaagaagaaaatcaagaacgtaatcccatttacaatagctacaaataaaataaaatatctaggaataaatgtaacataagaagtgaaagatctctacgatgaaaactatagaacaccaatgcaaaaaaattaaagaagacaccaaaaaaaaaatggaaagatagtccatgttcattgattggaagagtaaatattgttaaaatacacatacttcacaaagcaatctacagacccaatgcaatccctattgaaatattaataacattcttcacagaaacag-aaaaaaaatcctaaaatttatatgaaatcataaaagaaccagaatacccaaagccatccgtagcagaaagaacaaaactggaagaatcacatcacctgacgttaaattatactacagagcaattgtaagctaaacagcatggtactgtcataaaacagacac--agaccaatggaacagaatagagaacccagaaataaatccttacatttacaactaactcattttcaatgaaggtgccaagaatatacatgggggagaggacagtctcttcaccaaatcgtgctgggaaaactagatattcattggcagaa--------ttttttttttttgagatggagtctagctctgttgctcaggctgcagtgcagtggcgcgatctgggctcactgcaagctccacctcccgggttcacaccattctcctcctcagcctcccaagtagctgggagtacaagtgccc--ccatcacgcccagctattttttgttttgtatttttagtagagacggagtttcaccgtgttagccaggatgttcttgatatcctgctctcaggatctgcccacctcagcctcccaaagtcattggcagaataatcaaactagaaccctctcttgtgctatatacaaaaatcaaatccaaatgggttaaagacttaaatcaaggacaagaaactactgaaagaaaacattagggaaactctccaggaaattgttctgggcacagatttcttgagtaatactccaaaagctcaggcaaccaaagcaaaaatgaacaaatggtatcacatgaagttcaaaagtttctgcatagtaaagaaaacaatggacaaagtgaaaagacaatccacagaatggaagaaaatatttgcaaactatatatctgacaagggattaataaccagaatatataaggagttcaaacaactctataagaaaaaaactaataattcaattatttaaatgggcaaaa s panTro2.chr4_random 3362243 1829 + 6711082 aaaaagaccattcatcatgtctaagtgggattcatcccaaggatgccaacatggttcaacatatgcaaatcaatcaatgtgacacatcatatccacagaatgaaggacaaaaaccatatggtaatttcaattgatgctgaaaagcatttaataaaattcaacatccctgtgataaaaagaaacaccc-aaaaaaactagatttagaaggaacataccacaacacaataaaaaccatatgcaacagaccctcagccagtatcatcctgaacagagataacctgaaatcctttcttctaagatctggaacaaggcaagaatgtccacttccaacagtgttactcaacatagtactggaagtcctagctagagcaatcaagaaaattgaaaaacagtaaagggcacccaaatt-gaaagaagtaaaattattattgttttcttgtttgcaggtgatttgatcttatatttggaaaaacctaagaactccaccaaaaaactatcagaactgatcaacaaattcagagtcacacgatacaaaatcaaaatacaaaaatcagtaacatttctaaatgccaaaactgaacaatctaaagaagaaaatcaagaacgtaatcccatttacaataactacaaacaaaataaaatatctaggaataaatggaacaaaagaagtgaaagatctctacgatgaaaactatagaacaccaatgcaaaaaaattaaagaagacaccaaagaaaaaaaggaaacatagtccatgttcattgattggaagagtaaatattgttaaaatacacatacttcacaaagcaatctacagatccaatgcaatccctattgaaatactaataacattcttcacagaaacagaaaaaaaaatcctaaaatttatatgaaatcataaaagacccagaatacccaaagccatctgtagcaaaaagaacaaaactggaagaatcacatcacctgacgttaaattatactacagagcaattgtaagctaaacagcatggtactggcataaaacagacacatagaccaatggaacagaacagagaacccataaataaatccttacatttacaactaactcattttcaatgaaggtgccaagaatatacatgggggagaggacagtctcttcaccaaattgtgctgggaaaactagatattcattggcagaa-------tttttttttttttgagatggagtctagctttgttgctcaggctgcagtgcagtggcgcgatctgggctcactgcaagctccaccttccgggttcacaccattctcctcctcatcctcccaagtggctgggagtacaagtg-cc--ccaccacgcccagct-ttcttttttttgtatttttagtagagacggagtttcactgtgttagccaggatggtctcgatatcctgccctcatgatctgcccaactcagcctcccaaagtcattggcagaataattaaactagaaccctctcttgtgctatatacaaaaatcaaatccaaatgggttaaagacttaaatcaaggacaagaaactactgaaagaaaacattagggaaactctccaggaaattgttctgggcacagatttcttgagtaatactccaaaagctcaggcaaccaaagcaaaaatgaacaaatggtatcacatgaagttcaaaagtttctgcatagtaaagaaaacaatggacaaagtgaaaagacaatccacagaatggaagaaaatatttgcaaactatatatctgacaagggattaataaccagaatatataaggagttcaaacaactctataagaaaaaaactaataatccaattatttaaatgggcaaag i panTro2.chr4_random C 0 I 49165 s ponAbe2.chr3 42346430 1820 + 202140232 aaaaagactattcatcatgtctaagtgggatttatcccaagtatgccagcatggttcaacatatgtaaatcaatcattgtgacacatcatatcaacagaatgaaggacaaaaaccatatgataatttcaaccgatgctgaaaagcatttaataaaatccaacatccctatgataaaaagaaaccctcaaaaaaaactagatatagaaggaacatgccacaacacaataaaaaccatatacaacagacccacagccagtatcatcctgaacagggaaaaactgaaagcgattcttctaagatctggaacaagacaagaatgtccgcttccaacactgttactcaacatagtactggaagtcctagttagagaaattcagacaagagaaaaacaataaagggcatccacattggaaagaagtgaaattattattgttttctcatttgcagatgatttgatcttatatttggaaaaacctaaggactccaccaaaaaactattagaactgatcaataaattcagagtcacagaatacaaaatcaagctacaaaaatcagtagcatttctaaatgccaaaaatgaacaatctaaagaagaaaatcaagaaagtaatcccatttacaatagctacaaataaaataaaatatctaggaataaacataataaaagaagtgaaagatctctacagtgaaaactataaaacaccgatgcaaaaaaattaaagaggacacca---aaaaaatggaaaggtagtccgtgttcattgattagaagagtaaatattgttaaaatacccatacttcacaaagcaatctacagattcaatgcaatctctattgaaatactaataacactctttacagaaatag-aaaaaaaatcctaaaatttatatgaaaccataaaagacccagaatacccaaagctgtcctgagcaaaaagaacaaaactggaagaatcacattacctgactttaaattacactacagagcaattgtaaacaaaacagcatggtactggcataaaacagacacaaagaccaatggaacagaatcgagaacccagaaataaatccatacgtttacaactaactcattttcaatgaaggtgccaagaatatacatgggggagaggacagtctcttcaacaaattatgctggggaaactggatattcattggcagaattttttttttttttttttttgagatggagtctcgctctgtt----------------agtggcacgatctgggctcatggcaagctccacctcccaggctcatgccattctcctcctcagcctcccaggtagctgggactacaggca-cctaccaccatgcctggct-aatttttttttgtatttttagtagagatggagtttcaccatgttagctaggatggtctcgatctcctgccttcatgatccgcacgcctcggcctcccaaagtcattggcagaataattaaactagaaccctctcttgtgatatatacaaaaatcaaatccaaatggagtaaagacttaaatcaaagacaggaaactactgaaataaaacattagggaaactctccaggaaatcagtctgggcacagatttcttgagtaatactccaaaagctcaggcaaccaaagcaaaaatgaacaagtggtatcagatcaagttcaaaagcttctgcatagtaaagaaaacaatggacaaagtgaaaagacaatccacagaatggaataaaatatttgcaaactatatatctgacaagggattaataaccagaatatataaggagctcaaacaactctgtaagaaaaaaactaataatccaattatttaaatgggcaaag i ponAbe2.chr3 I 1473 C 0 a score=535910.000000 s hg19.chr4_gl000194_random 120713 2132 + 191469 aatctgaacagacatttctcaaaagaaggcatgcaggtcaggcgcagtggctcacacctgtaattccagcattttggggaaccaagacagttggaccacttgagcccaggagttcaagaccaacctgaaaaacatagcaaataatttttaaacctacctgggcatggtgatgcatgcctgtggtcccagctactcaggaggctgaggtgggaggattgcttgaaccctggtagtcataactacagtaagccatcattataccactgcactccagcctgggtgacagagtgagacactgtctc-aaaaaatgagcaaaaacaaaaaagaagatatataaatgtcaaataggtatatgaaaagatgctcaatatcactgatcatcagagaaattcaaatcaaaactacaataagatatcatcttacccccattaaaatggcttttatgcaaaagacaggcaataacaaatgcttgcaagaatgtagggaaaagagaaccctcttactctgttggtgggaatgtaaattagtacattcactatggagaacaatatggaggtccctcaaaaaattaaaaatagaactatcatatgatacagcaatcc------------------cactgctgggtatatacccaagggagggaaaattagtatatgaaagagatatctgcattcccatatttatttcagcactattcataatagccaagatttggaagcaacctaagtgtgcatcaacagatgaagggatgaagaaaatgtagtacatgtacacaatggagtactcttcggccatgaaaaagagtaagattctgtcacttgcaacaacgtggatggaactagggaacattatgttaagtacaatgagccaggcacagaa----agactttgcatgttctcacacatttgtgggagctaaaaattaaaacaattgaactcatcaagatggagagtagactgagagtttccagaggctgggaagagtagtggtgttacgggatctttggagtgtcacttttctggacagaaacctctatggctggtggcacctttacctgagttttgcttgggccccgcccactcagcctggctggctgtgctcagctcatgctaccaggttggatcccatgtttgccaagggagactgcgtggagtggcaaggggtgtgtgagcaagcatggggtctggccactgtgcagccagacttcctggctgctgcagtggggcaggtagctccaggtgccaacatgggtgccagctctccacaaatctgtggctggaccacgggcaccgcaagcagcttccgcagctggcacactgggaacacagtggcacctggaagcttggagataccaggaaccacagggccccaaagagggaatcacagctctggctcggggagctcccaggtctgggcttcccaaagcgtcacagctcttgtttccttctctttgcccacaatgtggcaagcaaggggcatgactcagccctgtttgtgttacagctctttcagcctcTTCCCTAGgatttgtcataattaattatcatattgtcttatttttttacatttgtttcaacttcagaagatgcatggatctaaacacaacataatgtgttagctagctgccatatgaatttctccgtgtttcaccactatgcagcctaaagttattccgtcatccatgactatcctggctaaagagtctaaagatctttgtttggtagctatggcttcagctagttcattcgctaatttacctagagtggttgacagatttctaattatacattcatgagaggttactccccaccattgcaagtgacttctgccaaaCATTGGCCAAAATTCACCTCCTTGGTTTGCAGGTATGGTTTGTCTAATCCTGGAAAGTAATTTCGATGAACTACTTCAGTGTTCAGAAACATTGGAGTTATAAATAGAAAGAGGAAGAGTCACATAACCTAATAGACAATTACTTCTCATATGCCAGCGGTCAACACATTCATAAGCCCATGGGTGGTTGATCCAGGGACCACACAGGGTCCCTGACAGACTCTGAAAGTTAAGGGTTTGGTTTACTGGTAACAGAGACAGGTTAAAGTACATGTCTTCAGTCTTGAGTAGAGTGTAATCAGTCTCA--TTTTTTT s ponAbe2.chr3 42348250 2130 + 202140232 -atctgaatagacatttctcaaaagaagacatacaggtcaggcacggtggctcacacctgtaattccagcacttttggaagccaaggcaggtggaccacttgagcccaggagttcaagaccaacctgaacaacatagcaaataattttaaaaactacttgggcacggtgatgcatgcctgtggtcccagctactcaggaggctgaggtgggaggattgcttgaaccctggcagtcaaaactacagtaagccatgatcatgccactgcactccagcctgggtgacagagtgagaccatgtctcaaaaaaacaagcaaaaacaaaaagaaagatatataagtgtcatataggtatatgaaaagatgctcaatatcattgatcatcagagaaattcaaatcaaaaatacaataaaatatcatctca-ccccattaaaattgtctttatccaaaagacaggcaataacaaatgcttgcaagaacatggagaaaagggaaccctcttactctgttggtgggaatgtaaattagtacattcactatggagaacaatatggaggtccctcaaaaaattaaaaatagaactatcatatgatccagtaatcc------------------cactgctggatatatatcctagggagggaaaattagtgtatcaaagagatatctgcattcccatatttatttcagccctattcataatagccaagatttagaagcaacctaaatgtgcatcaacagatgaagggataaagaaaatgtagtacatatacacaatggagtactcttcagccatgaaaaagtataagatgttgtcatgtgcaacaacatggatggaactagaggacgttacgttaagtgcaataaggcaggcacagaaagacagactttgcatgttctcactcatctgtgggagctaaaaattaaaacaattgaactcatcaagatagagagtagactgagagtttccagaggctgggaagagtagtggtgttatgggatatttggagtgtcacttttctgaacagaaacctctatggctggtggtacctttgcctgagtttt-cttgggccccgcccactcaacctggcaggctgtgctcagctcatgctaccaggttggatcccatgcctgccaagggagactgcatggagtggcaaggggtgcgtgagcgagcatggggtctggccactgtgcagtcagacttgctggctgctgcagtggggcaggtagctccaggtgccaacatgggtgccagctctccacaaggctgtgactggaccatgggcactgcaagcagcttccacagctggcacactgggaacacagtgacacccagaatcttggagatacaagaaaccacagggccccaaagagggaatcacagccctggctcggggagctcccagatatggactccccaaggggccacagctcttctttccttctctttgcccacagtgtggcgagcaaggggcatgtctcagccctg--tgtgttacagctctttcagcctcTTCCCTAGGATTTGTCATAATTAATTCCCATATCATCTTATTTTTTTACATGTGTTTCAACTTCAGAAGATGTATGGACCTAAACACAGCATGATGTGTTAGCTAGCTGCCATACGAATTTCTCCCTGTTTCAGCACTCTGTAGCCTAAAGTTATTCCATCATCCACGACTATCCTGGCTAAAGAGTCTAAAGATC----TTTGGTAGCTATGGCTTCAGCTAGTTCATTTTCTAAGTTACCTAGAGTGGTTGACAGATTTCTAATTATACGTTCATGAGCGGTTACTGCCCACCATTGAAAGAGACTTCTGCCAAACATAGGCCAAAATCCATCTCCTTGGTTTGCAGGTACGATTTGTCTAATCCTGGAAAATAATTTCGATGAACTAGTTCAGTGTTCAGAAACCGTGGAGTTATAAATAGAAAGAGGAAGAGCCACATAACCTAATAGAAAATTACCTCTCATATGCAAGAGGTCAACACATTCATAAGCCCATGGGTGGTTGATCCAGGGACCACACATGGTCCCTGACAGGTTCTGAAAGTTAAGGCTTTGGTTTACTGGTAACAGAGACAGGTTAAAGTACATGTCTTCAGTCTTGAGTAGAATGTAATCAGTCTGATTTTTTTTT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3413237 2147 + 6711082 aatctgaacagacatttctcaaaagaaggcacacaggtcaggcacagtggctctcacctgtaattccagcattttggggagccaagacaggtggaccacttgagtccaggagttcaagaccaacctgaaaaacatagcaaataattttaaaaactatctgggcatggtgatgcatgcctgtggtcccagctactcaggaggctgaggtgggaggattgcttgaaccctggtagtcaaaactaccgtaagccatcatcagaccactgcactccagcctgggtgacagagtgagaccctgtctc-aaaaaatgagcaaaaacaaaaaagaagatatataaatgtcaaacaggtatatgaaaagatgctcaatatcattaatcatcagagcatttcaaatcaaaactgcaataagatatcatcttacccccattaaaatggcttttatgcaaaagagaggcaataacaaatgcttgcaagaatgtggggaaaagagaaccctcttactctgttggtgggaatgtaaattagtacattcactatggagaacaatatggaggtccctcaaaaaattaaaaatagaactatcatatgatacagcaatcctgcaatgcagcaactcagcaatgctgggtatatacccaagggagggaaaattagtatatcaaagagatatctgcattcccatatttatttcagcactattcataatagccaagatttggaagcaacctaagtgtgcataaacagatgaagggataaagaaaatgtagtacatgtacacaatggagtactcttcgaccatgaaaaagaataaggttctgtcatttgcaacaatgtggatggaactaggggacattatgttaagtacaatgagccaggcacagaa----agactttgcatgttctcacacatttgtgggagctaaaaattaaaacaattgaactcatcaagatagagagtagactgagagtttccagaggttgggaagagtagcggtgttacgggatctttggagtgtcacttttctggacagaaaactctatggctggtggcacctttacctgagttttgcttgggccccgcccactcagcctggcaggctgtgctcagctcatgctaccaggttggatcccatgtttgccaagggagactgcgcggagtgacaaggggtgtgtgagcgagcatggggtctggccactgtgcagtcagacttcctggctgctgcagtggggcaggtaactccaggtgccaacatgggtaccagctctccacaaggctgttgctggaccacaggcaccgcaagcagcttccacagctggcacactgggaacacagtggcacccagaagcttggagataccaggaaccacagggccccaaagagggaatcacagccctggctcggggagctcccaggtctgggcttcccaaagggtcacagctcttttttccttctctttgcccacagtgtggctagcaaggggcatgtctcagccctgtttgtgttacagctctttcagcctcTTCTCTAGgatttgtcataattaattctcatattgtcttatttttttacatgtgtttcaacctcagaagatgtatggatctaaacacaacatgatgtgttagctagctgccatatgaatttctccctgtttcaccactatgcagcctaaagttattccgtcatccttgactatcctggctaaagagtctaaagatctttgtttggtagctatggcttcagctagttcatttgctaagttacctagagtggttgacagatttctaattatacgttcatgagaggttactccccaccattgcaagtgacttctgccaaacataggccaaaattcatctccttggTGTGCAGGTATGGTTTATCTAATCCTGGAAAGTAATTTCGATGAATTACTTCAGTGTTCAGAAACATTGGAGTTATAAATAGAAAAAGGAAGAGTCACATAACCTAATAGACAATTACTTCTCATATGCCAGCGGTCAACACATTCATAAGCCCATGGGTGGTTGATCCAGGGACCACACAGGGTCCCTGACAGATTCTGAAAGTTAAGGCTTTGGTTTACTGGTAACAGAGACAGGTTAAAGTACACGTCTTCAGTCTTGAGTAGAGTGTAATCAGT-TCA----TTTTT i panTro2.chr4_random I 49165 C 0 a score=166698.000000 s hg19.chr4_gl000194_random 122845 355 + 191469 TTTTTAATGAGACAAACATCAGGTAAAGACCTTGACAAGAAGGAAGAGAAATCCCGAGATTCTATAATCATAATAATTGAATTGTAATTGCTAGTTTAAGTAGTCCTTC-AAAAATACATCTCATTCCTGACAGGATAAAACAAGTTTtaaaaaatatattatattcagattcactagggaacacttggagccaggaaataattcaggattcagcccaaattataggcaaataataaaaactctaaaacaatgatcagggttggaatctaatagcatatgtcatagttttcttttggaacataaattt--tctctctagtccatca--ttttttcaaagacaaatcatagtaggaccaat s panTro2.chr4_random 3415384 356 + 6711082 TTTTTAATGAGACAAACATCAGGTAAAGACTTTGACAAGAAGGAAGAGAAATCCCGAGATTCTATAATCATAATAATCGAATTGTAATTGCTAGTTTAAGTAGTACTTCAAAAAATACATCTCATTCCTGACAGGATAAAACAAGTTTTtaaaaatatattatattcagattcactagggaacacttggagccaggaaataattcaggattcagcccaaattataggcaaataataaaaactctaaaacaatgatcagggttgtaatctaatagcatatgtcatagttttcttttggaacataaattt--tctctctagtccatca--ttttatcaaagacaaatcatagtaggaccaat i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42350380 350 + 202140232 TTTTTAATGAGACAAATATCAGGTAAAGATCTTGACAAGAAGGAAGAGAAATTCTGAGATTCTATAGTCATAATAATCAAATTGCAATTGCTAGTTTAAGTAGTCCTTC-AAAAATACATCTCATTCCTGACAGGATAAAACAAGTTTTTAAAA------TATATCCAG-TTCACTAGGggatacttggagccaggaaataattcaggattcagcccaaattataggcatataataaaaactcagaaacaatgatcagggttggaatctaatagcgtatgtcatagttttcttttggaacataaattttctctctctagtccctca-tttttatcgaagacaaatcacagtaggacc-at i ponAbe2.chr3 C 0 C 0 s papHam1.Contig154585 0 357 + 360 TTTTTAATGAGACAAACATCAGGTGAAGACCTTGACAAGAAGGAAGAGAAAACCTGAAATTCTATAATCATAATAATAGAATTGTAATTGCTAGTTTAAGCAGTCCTTC-AAAAATACATCTCATTCCTGACAGGCTAAAACAAGTTTTTAAAA-TACattatatccaggttcactaagggacacttggagccaggaaataattcaggattcagccaggatt-caggcaaataaaaaaaactcaaaaacaatgatcagggttggaatctaatagtatatgtcatagttttcttttggaacataagttttctctctctagtccctctatttttatcaaagacaaatcatagtaggaccaat i papHam1.Contig154585 N 0 N 0 a score=1357425.000000 s hg19.chr4_gl000194_random 123200 5394 + 191469 tttgtatgcaaaataagttttagtcttatcataccgggcctgattatttccataaagggcagcaagaatatttattggccatataggcttcttaaaattggctttgttggaaatttttaataaggaatctgagacttttaagagccttgaagctagccaagtcaaagatttg-catcagactgtgtctgtaatac-ttTTTTAACCTACtttttaaaattatactttaagttctggggtacatgtgcagaacgtgcaggtttgttacataggtatatatattctgtggtggtttgctgcacccatcaacccatctcctatattaggcatttctcctaatgctattcctctccctgcccccaccccccaacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcttccatgtccctgcaaaggacatgaactcatcgttttttatggctgcatagtattccatggtgtatatgtgccacattttctttattcaatctatcattgatgggcatttgggttggttccaagtctttattattgtgaacagtcctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatactcagtaatgggattgctgggccaaacggtatttctagctctagatccttgaggaatagccacactgtcttccacaatggttgaactagtttacactcccaccaacagtgtaaaagccttcctatttctccacactctctccagtatttgttgtttcctgactctttaattttcgccattctaactggcatgagatggtatctcattgtggttttgatttgcatttctctaatgactagtgatgatgagctttttt---ataagtttgttggttgcataattgtcctcttttgagaagtgtctgttcacatcctttgcccacttttcaatgggg----ttgttttatcttgcaaatttgtttaagttctttgtagattctggatattagccctttgtcagatggatagactgcaaaaattttctcccattttgtaggttgcccgttcactctgatagtttcttttgctgtccagaaactttttagtttaattaggtcccatttgtcaattttggcttttgttgcctttgtttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcctctacggtttttatggctttaggtcttttgtttaagtctttaacccatcttgagttaatttttgtataaggtgtaaggaagggatccagtttcagctttctgcctatggctagccagttttcccaacaccatttattaaatagggaatcctttccccagtgctcgtttttctcaggtttgtcaaagatcagatggttgtagatgtgtggtgctatttttgaggcctctgttctgttcctttgatctatatatctgttttcgtaccagtaccatgctgttttggttgccatag-cttgtaatatagtttgaagtcaggtggcatgatgcttccagctttgttctttttggttagggttgtcttggctattcgggctcttttttgattccatatgaaatttaaagtatatttttccaattccgtggagaaagtcaatggcagtttaatggggatagcagtgaatctataaattactttgggcagta-ggtcactttcacgatactgattcttcttatctatgagcatggaatgattttccatttgtttgtgtcctctcttatttccttgaggagtggtttgtagttctccttgaagaggtccttcacatccttgtaagttgtattcctaggtatttcattctttttatagcaatggtgaatgggagttcactcacagtttggctctctgtttgtctgttattgctgtataggaatgcttgtgatttttgcacattgattttgtatcctgaaactttgctgaagttgcttatcagcttaaggagattttgggctgagatgatggggttttctaaatatacaatcatgtcatctgcaaagagagaccatttgacttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtagtgagagagggtatccttgtcttgtgctgattttgaaagggaatgcttccagtttttgcacattcagtatgttactggctgtgggtttgtcataaatagcacttattattttgagatacgttccatcaatacc-agtttattgagagtttttagcatgaaaagttgttgaattttgtcaaaggccctttctgcatctattgagataatcatgcagtttttgtcattggttccctttatgtgatggattacatttattgatttgcatatgttgaaccacccttgcatcccaggggtgaagccgacttgatcatggtggacaagctttttgatgtgctgctggattcagttttccagtattttattcaggatttctgcatcaatgttcatcagggatattggtctaaagttttcttttcttgttgtgtccctgcgaggttttggtatcaagttgatgctgacctcataaaatgagttagggaggattctctctttttctattgtttggaatagtttcagaaggaatggtaccagctcctctttgtacctctagtagaattcggctgtgaatccatctggtcctggaatttttttggttggtaggcta-taattaatgcctcaatttcagaacttgttattggtctattcaggaatttcacttcttcctggtttagtcttgg----------------------------------------------------------------------tagtattctctgatgataatttgtatttctgtgggatcagtggtgatatccccttaatcatgttttattgcatctatttgattcttctctcttttcttctttattagtctggctagtggtctgatttgttgatcttttcaaaaaaccagctcctggattcattgattttttgaagggtttttcatgtctctatctccttcaattatgctctgatcttatttgtgtcttgtcttctgctagcttttgaatttgtttgttcttgcttctctagttcttttaattttcatgttaaggtgtcaattttagatctttcctgctttctcttgtggacatttagtgctataaatttccctctacacactgctttaaatgtgtcccagagattctgggacgttgtgtctttgttctcattggtttcgaagaacatttttatttctgccttcaattctttatttacccagtagtcattcaggatcaggttacccagtttccatgtagttgtgaggttttgagtgagtttcttaatcctgcatactaatttgaatgcattgcggtctgagagactgtttgttatgatttccattcttttgcatttcctgaggagagttttacttccaattatgtggtcaattttagaataagtgcaatgtggtgctcagaagaaggtatattctattgatttggggtggagagttctgtagatatcttttaggtccacttggtccagaactgagttcaagtcctggatattcttgttaattttctgtctcattga----tctaatattgacagtagagtgttaaagtctcccactattattgtgtgggagtctaagtctctctgtaggtctttaagaacttgctttatgaatctgagtgctcctgtattgggtgcatatatgtctaggatagttagcacttcttgttgcattgatccctttaccattatgtagtgcccttctttgtctcttttgatctctgttggcttaagatctgttttatctgaaactaggattgcaacccctgccttttgttgctttccacttgcttggtaaatgttcctccatccctttattttgagcctatgtgtatgagatgggtctcctgagtacagcacattgatgggtcttgactctttttccaatttgccagtctgtgtctttcaattgggggcatttagctcatttacatttaaggttaatattgttatgtatgaatttgatcctgtcattatgatactagctggttattttgctcattagttgatgcagatttttcatagtgtcaatggtctttataatttgttatgtttttgcagtggctgttaccagttgttcctttccatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaatatctctcagcatttgct----tgtaaaggattttatttctacttcaattatgaagcttagtttgcctggatatgaaattctggcttgaaaattcttttctttaggaatgttgtatattggcccccactctcttctggcttgtaggctttctgccaagagatccaatgttagtctgatgggcttccctttgtgggtaactcaacctttctctctggctgccctttata-ttttttccttcatttcaaccttggtgaatctgatgattttatgtcttggggttgctcttcttgaggaatatcttagtggtgttctctgtatttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctcctggataatatccttgagagtgttttccaacttggttccattctctctgtcactttcaggtacacgaatcaaacatagattcagtgttttaacatattcctctatttcttggaggcttttttcatttc-tttcactcttttttctcgaatcttttcttcttgctttatttcattgagttgatcttcaatctctgatattctttctcctgcttgattgattcagctattgatacttgtgtatgcttcatgaagttcttgtgctgggtttttcagctccatcaggtcatttatattcttctctaaactggttattctagttaacaattcgtcctacctttttttttcaggctcttagcttccttgcattgggttagaacaccctcctttagcttggaggagtttgttattacccgccttctgaagcctacttctgtcaatccatcaaactcattgtctgtccagttttgttcccttgctggtggggagttgtgatcttctggaggagaagaggcattctggcttttggagttttcagcctttttgcactagtttctccccatctttgtggatttatctacctttggtctttgatgttggtgatgttgatactattcctttatgtttgttagttttccttctaccagtcaggtccctccgctgcaggtttgctcgagtttgctggaggtccacttcagaccctgtttgcctgggtatcaccagtgga s panTro2.chr4_random 3415740 5394 + 6711082 tttgtatgcaaaataagttttagtcttatcatacctggcctgattatttccataaagtgcagcaagaatatttattggccatataggcttcttaaaattggctttgttggaaattttaaataaggaatcttagac-tttaaaagccttgaagctagccaagtaaaagatttg-catcagactgtgtctgtaatac-ttTTTTAACCTACtttttaaaattataccttaagttctggggtacatgtgcagaaagtgcaggtttgttacataggtatatatattctgtggtggtttgctgcacccatcaacccattacctatattaggcatttctcctaatgctattcctcccccttccccca-cccccaacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgtggtgtttggttttctgttcttgtgttagtttgccaagaatgatggtttccatcttcttccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttctttattcagtctatcattgatgggcatttgggttggttccaagtctttgttattgtgaacagtcctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtacgtacccagtaatgggattgctggaccaaatggtatttctagttctagatccttgaggaatagccacactgtcttccacaaaggttgaactaatttacactcccaccaacagtgtaaaagccttcgtatttctccacaccctctccattatttgttgtttcctgaccctttaatgatcgccattctaactggcatgagatggtatctcattttggttttgatttgcatttctctaatgactagtgatgatgagcttttttttcataagtttgttggttgcataattgtcctcttttgagaagtgtctgttcacatccttcgcccacttttcaatgggg----ttgttttatcttgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatggacagattgcaaaaattttctcccattttgtaggttgcccgttcactctgatagtttctttttctgtccagaagctctttagtttaattaggtcccatttgtcaattttggcttttgttgcctttgtttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcctctacggtttttatggctttaggtctgatgtttaagtctttaatccatcttgagttaatttttgtataaggtgtaaggaagggatccagtttcagctttctgcctatggctagccagttttcccaacaccatttattaaatagggaatcctttccccagtgattgtttttctgaggtttgtcaaagatcagatggttctagatgtgtggtgttatttctgaggcctctgttctattcctttgatctatatatttgttttggtaccagtaccatgctgttttggttaccgtag-cttgtagtatagtttgaagtcaggtaccatgttgcttccagctttgttctttttgattaggattgtcttggctattcaggctcttttttgattccatatgaaatttaaaatatatttttccaattccatggagaaagtcaatggtagtttaatggggatagcagtgaatctataaattactttgggcagtatggccactttcatgatactgattcttcctatctaggagcatggaatgattttccatttgtttgtgtcctctcttatttccttgaggagtggtttgtagttctccttgaagaggtccttcacatccttgtaagttgtattcctaggtatttcattctttttataacaatggtgaatgggagttcactcacagtttggctctctgtttgtctgttattgctgtataggaatgcttctgatttttgcacattgattttgtatcctgaaactttgctgaagttgcttatcagcttaaggagattttgggctgagatgatggggttttctaaatatacaatcatgtcat-tgcaaacagagaccatttgacttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtagtgagagagggcatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgcacattcagtatgttattggctgtgggcttgtcataaatagcacttagtattttgagatacgttccatcaatacc-agtttattgagagtttttagcatg-aaggctgttgaattttgtcaaaggccctttctgcatctattgagctaatcatgcagtttttgtcattggttccctttatgtgatggattacatttattgatttgcatatgttgaaccacccttgcatcccaggggtgaagccgacttgatcacggtggacaagctttttgatgtgctgctggattcagttttccagtattttatccaggatttctgcatcgatgttcatcagggatattggcctaaaattttctttttttgttgtgtccctgtgaggttttggtatcaaggtgatgctgacctcataaaatgagttagggaggattctctctttttctattgtttggaatagtttcagaaggaatggtaccagctcctctttgtatctctcatagaattcggctgtgaatccgtctggtcctggaatttttttggttggtaggcta-taattaatgcctcaatttcagaacttgttattggtctattcaggaatttcacttcttcctggtttagtcttgg----------------------------------------------------------------------tagtattctctgatgataatttgtatttctgtgggatcagtggtgatatccccttaatcatgttttattgcatctatttgattcttctctcttttcttctttattagtctggctagtggtctgttttgttgatcttttcaaaaaaccagctcctggattcattgattttttgaagggtttttcgtgtctctatctccttcaattctgctctgatcttatttgtgtcttgtctcctgttagcttttgaatttgtttgttcttgcttctctagttcttttaattttgatgttaaggtgtcaattttagatctttcctgctttctcttgtggacatttagtgctataaatttccctctacacactgctttaaatgtgtcccagagattctgggacgttgtgtctttgttttcattggttttgaagaacatctttatttctgccttcatttcgttatttacccagtagtcattcaggagcaggtcacccagtttccatgtagttgtgaggttttgagtgagtttcttaatcctgcatattaatttgaatgcattgtggtctgagagactgtttgttatgatttcaattcttttgcatttcctgaggagagttttacttccaattatgtggtcaattttagaataagtgcaatgtggtgctgagaataaggtatattctgttgatttggggtggagagctctgtagatatcttttaggtccacttggtccagaactgagttcaagtcctggatattattgttaattttctgtctcattga----tctaatattgacagtggagtgttaaagtctcccactattattgtgtgggagtctaagtctctttgtaggtctttaagaacttgctttatgaatctgagtgctcctgtattgggtgcatatatgtctaggatagttagctcttcttgttgcattgatccctttaccattatgtaacgcccttctttgtctcttttgatctttgctggcttaagatctgttttatcagaagctaggattgcaacccctgccttttgttgctttccacttgcttggtaaatgttcctccatccctttattttgagcctatgtgtatgagatgggtctcctgagtacagcacattgatgggtcttgactctttatccaatttgccagtctgtgtctttcaattgggggcatttagctcatttacatttaaggtttatattgttatgtatgaatttgatcctgtcattatgatactagctgcttattttgctcattagttgatgcaattttttcatagtgtcaatggtctttataatttggtatgtttttgcagtggctgttaccagttgttcctttccgtgtttagtgcttccttcagaaactcttgtaaggcaggcctggtggtgacaatatctctcagcatttgct----tgtaaaggattttatttctccttcaattatgaagcttagtttggctggatatgaaattctggcttgaaaattcttttctttagaaatgttgtatattggctcccactgtcttctggcttgtaggctttctgccaagagatccactgttagtctgatgggcttccctttgtgggtaactcaacctttctctctggctgccctttatatttttttccttcatttcaaccttgctgaatcttatgattttgtgtcttggggttgctcttcttgaggagtatcttagtggtgttctctgtatttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctcctggataatatccttgagagtgttttccaacttggttccattctctctgtcactttcaggtacacgaatcaaacatagattcagtcttttaacatagtcctctatttcttggaggctttgttcatttc-tctcactcttttttctctaatcttgtcttcttgctttatttcattgagttgatcttcaatctctgatatcctttctcctgcttgattgattcagctattgatacttgtgtatgcttcatgaagttcttgtgctgggtttttcagctccatcaggtcatttatattctcctctaaactggttattctagttaacaattcatcctacc-ttttttttcaggctcttagcttccttgcattgggttagaacatgctcctttagctcggaggagtttgttattacccgccttctgaagcctacttctatcaattcatcaaactcattgtctgtccagttttgttcccttgctggtggggagttgtgatcttctggaagagaagaggcattctgggttttggagttttcagcctttttgcactggtttctccccatctttgtggatttatctacctttgctctttgatgttggtgatgttgatactattcctttctgtatgttagttttccttctaaaagtcaggtccctctgctgcaggtttgctcaagtttgctggaggtccactccagaccccgtttgcatgagtatcaccagtgga i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42350730 5473 + 202140232 tttgtgtgcaaaataagttttagtcttatcatacctggcctgattatttgcataaagtgcagcaagaatatttattgaccacataggcttcttaaaattgactttgttgaaactttttaataaggaatcttagaattttaaaagccttgaggctagccaactcaaagatttgccatcagactgtgtctgtaatacttTTTTTAACCTACttttt-ttattatactttaagttctggggtacatgtgcagaacgtgcaggtttattacataggtatacatgtgccatggtggtttgctgcacccatcaacccatcacctatattaggtatttgtcctaatgctctccctccccccacccccaccctgcaacaggccccagtgtgtgatgctcccctccctgtgtccatgtgttttcattgttcgactcccacttataagtgagaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatggcttccagcttcatccatatccctgcaaaggatatgaactcatacttttttatggctgcacagtattccaaggtgtatatgtgccacattttctttatccagtctatcattgatgggcaattgggttggttccaagtctttgctattgtgaacagtcctgcagtaaacatacgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggccaaatggtatttctagttctagatccttgaggaatagccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcgttcctattcctccacaccctctccagtatctgttatttcctga--ctttaatgatcgccattctaactggcatgagatggtatctcattgtggttttgatttgcatttctctaatgactagtgatgatgagcatgttt-tcatatgtttgttggcagcataattgtcttcttttgagaagtgtctgttcacatcctttgcccactttttgatggggttgtttgttttttcttgtaaatttgtttaagttctttgtagattctggatattagtcctttgtcagacggatagattgcaaaaattttctcccattttgtaggttgcccattcactctgatagtttattttgctgaccagaagctctttagtttaattatgtcccatttgtcaattttggcttttgttgccattgtttttggtgttttagtcatgaagcctttgcccatgcctatgtcctgaatggtattgcctaggttttcctctagggtttttatggctttaggtcttacatttaagtctttaatccatcttgagttaatttgtgtataaggtgcaaggaagggatccagtttcagctttctgcctatggctagccagttttcccaacaccatttattaaatagggaatcttttctccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttttgaggcctctgttctattcctttgatctatatatctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcttccagctttgttctttttgcttaggattgtcttggctattcaggctctgttttgattacacatgaaatttaaagtatatttttccagttctgtgaagaaagtcaatggtagtttgatggggatagcagtgaatctataaattcctttgggcagtatggccattttcacgatattgattcttcctatctatgagcatgaaatg-tttgtcatttgtttgtgtcctctcttattttcttgaacagtggtttgtagttctccttgaagaggtccttcacatccttgtaagctgtattgctaggtatttcattctttttgtagcaattgtgaatgggagttcactcatagtttggctctctgtttgtctgttattggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgaaactttgctgaagttgcttatcagcttaaggggatttggggctgagatgatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaactgaata-cctttatttctttctcttgcctgattgccctggccagaacttc-----ctatgtttaataggagtggtgagagagggcatccttgtcttgtgctgattttcaaagagaatgcttccagtttttgcaaattcagtatattattggctgtgggtttgtcataaatagcacttattattttaagatatgttccatcaacacctagtttattgagagcttttagcatgaagggctgttgaattttgtcaaaggtcttttctgcatctattgagataatcgtgtagtttttgtcattggttccatttatgtgatggattacatttattgatttgcatatgttgaaccagctttgcatcccagggatgaagccaactttatcatggtggacaagctttttgatgtgctgctggattcagtttgccagtattttattcaggatttctgcatcgatgttcatca-ggatattggcctaaaattttcttttttcattgtgtccctgccaggtttttgtatcaagatgatgctggcctcataaagtgagttagggagcatgctctctttttctattgtttggaatagtttcagaaggaatggtactagctcctttttgtacccctggtagaattcggctgtgaatctgtctggtcctggactttttttggttggtaggctgttaattaatgcctcaatttcagaacttgttattggtctattcaggaatttgacttattcctggtttagtcttgggagggtatatgtgtccaggaatttatccatttcttctagattttctagtttatttgcatagaggtgtttatagtattgtctgatggtaatttctatttctgtgggattggtggtgatatcccctttatcattttttattgcatctatttgattcttctctcttttcttctttattagtctgactagtggtctattttgttgatcttttcaaaaaaccagctcctggattcactgattttttgaagggttttttgtgtctctatctccttcagttctgctctgattttatttatgtcttgtcttctgctagcttttgaattgatttgctcttgcttctctagttcttttaattgtggtgttaaggtgtcaattttagatatttgctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttaaatgtgtcccagagattctggtacgttgtgtctttgttctcattggtttcaaagaacatctttatttctgccttcattttgttatgtacccagtagtgattcaggagcagtttgctcagtttccatgtagttgtgctggtttgagtgagtttcttaatcctgagttctaatttgattgcactgtggtctgagagactgtttgttatgatttccattcttttgcatttgctgaggagtgttttacttccaattatatggtcaattttagaataagtgcaatgtggagctgagaagaaggcatattctgttgatttggggtggacagttctgtagaagtctattaggtccacttgttccagagctgagttcaagtcctggatattcttgttaattttctgtctcattgatctgtctaatattgacagtggagtgttaaagtgtcccactattattgcatgggagtctaagtctctttgtatgtctttaagaacttgctttatgaatctgggtgctcctgtattgggtgcatatatgtctaggatagttagttcttcttgttgaattgatctctttaccattatgtaatgcccttctttgtctcttttgatctttgttggcttaaagtctgttttatcagagactaggattgcaacccctgccttttgttgctttctgcttgcttagtaaatcttcctccattcctttattttgagcctgtgtgtatgagatgtgtctcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttaattgggggcatttagcccatttacatttaaggttaatattgttacgtgtgaatttgatcctgtcattatgatactagctggttattttgcttgtttgttgatgcagttttttcatagtgtcaatggtctttacaatttggtgtgtttttgcagtggctggtaccagttgttcctttccatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgaaaaaatctctcagcatttgcttgtctgtaaaggattttatttctccttcgcttatgaagcttagtttggctggatatgaaattctggcttgaaaattcttttctttaggaatgttgaatattggcccccactctcttctggcttgtagagtttctgccaagagatccggtgttagtctgatgggcttccttttgtgggtaactcaacctttctctctggctgcccttaaca-tttttcccttcatttcaaccttggtgaatctgatgattatgtgtcttggggttgctcttctcaaggaatacctttgtggtgttctctgtatttcctgaatttgaatgttggcctgtctttctaggttggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaatcaaacatagattcagtcttttcatgtattcctctatttcttggaggctttgttcatttcttttcactcttttttctctaatcttgtcttcttgctttatttcattgagttgatcttcaatctctgatatcctttcttctgcttgattgatttggctattgatacttgtgtatgcttcatgaagttctcgtgctgtgtttttcagctccatcaggtcatttatgttcttctctaaactggttattctatttagcaattcatctaacc-tttttttccaggttcttagcttccttgcattgggttagaacatgctcctttagctcagaggagtttgttattacctgccttctgaagtctacttctgtcaattcgtcaaactcattctctgtccagttttgttcccttgctggggaggagttatgatcctttggaagagaagaggcattttggctttgggagttttcagcctttttgcactggtttctccccatctttgtggatttatctacctttggtctttgatgttggtaatgttgatactattcctttctgtttgttagttttccttctaacagtcaggtccctctgctgcaggtctgctggagtttgctggaggtccactccagaccctgttttcctgtgtatcaccagtgga i ponAbe2.chr3 C 0 I 4328 a score=48966.000000 s hg19.chr4_gl000194_random 128594 553 + 191469 ggctcagttggaaatgcatgaaccacctgccttctgtgttgatcccactgggtgctgcagaccggagctgttcctattcagacatcttgccagcTCTcctgtaatacttttatgaatgggtgtagtcctatcttctcaaggtccccaaataacttgaggttcctgggcctgtcagaaagtgacattctttacttcttaccacaaggacagcaactttgtaaaggacccttgtagacaagacaccaagccagtcattctaaggggctttgcattggtgctataaagtcaagctcaattccttaaagtggtctggttgtatctgccgttcgagttaaagccttgataaaacaaacagtgtctccaattgaatcctgttaccaaaaacagattcttattgaaattatgcaaataattatattgccataatttaggaatgctcacgaatggcttctgaattctggagaaatcagttagagagacagataaatggctcaaatttttgttcacaatgtagtttttctaacgtagggtaagttaaaaatagctgaaaaga s panTro2.chr4_random 3421134 551 + 6711082 agct--gttggaaatgcatgaaccacctgccttctgtgttgatctcattgggtgctgcaggccggagctgttcctattcagacatcttgccagcTCTcctgtaatacttttatgaatgggtgtagtcctctcttctcaaggtccccaaataacttgaggttcctgggcccatcagaaagtgacattctttgcttcttaccacaaggacaggaactttctaaaggacccttgtagacaggacaccaagccagtcattctaaggggctttgtattggtgctataaagtcaacctcaattccttaaagtggtctggttgtatctgccgttcgagttaaagccttgataaaacaaacagtgtctccaattgaatcctgttaccaaaaatagattcttattgaaattatgcaaataattatattgccataatttaggaatgctcacgaatggcttctgaattctggagaaatcagttagagagacagataaatggctcaaatttttgttcacaatgtagtttatctaatgtatggtaagttaaaaatagctgaaaaga i panTro2.chr4_random C 0 I 52714 e ponAbe2.chr3 42356203 4328 + 202140232 I a score=293001.000000 s hg19.chr4_gl000194_random 129147 3341 + 191469 aaaaaaattcttgactttggaaaacaaaacataaagagaatcaacaatgtttccaatggaagggccatgaataaaatcttttccttcttttataagttcagtccaatgtaactaaatcttgttctgcttgatttcaaatagcaattctcattcagttttttgtgttttgcttgatttcaattggaaatcctcattcagctttttagagtcctggaagattttcctagtccaatggtatgatccccaaagttatctgaaaccatatttaagagaacttgtcagagtcctttccattaaaagtaatttagatgatagctgattgtaaaggcttttttttttttttttgagacatggtctggttctatcactcaggatggagtgttgtggcatgatcttggctcaccacaatttctccctcccaaactcaagccatcctcctacctcagcctccgaagtagttgggaccataggcatgcaccatcatgctggctaatttttgtatttttgtagagacagggttttaccatgttgcccaggatgctttcaaacttcttagttcaagcaagtcacccacctcggccttgcaaagtgttttgatttttacacgtgtgagccaccgtgccctgcaccacgcccagcaccgtgccctgcacagcctccagcagcacgcccggcctgtaaagggttttagagaagaactttaatcaatcaccgtggatgacaaaaacttagaatatcctttggttaaaatccagtggaagttctcgacctgcgagaaaatttagttatttctattatatgtagcattttaagataacagccagaatcatgactgacggcaacacatcagatccatcagacttccacaaattttatataatctttagaatatttatattaataatatatctatacatatacaactatagagaatatttaacatcatcaaaattatgactgataccatattagatttttataatttatataacatttaaaatatgtatattaataatatacctataaatgtaaccaaaagaagatttaggccaggcacagtggctcatgtctgtaatcccaacactttgggaggccaagttggacagatcatcagaggtcaggagtttgacaccagcctggccaacatggagaactcttgtttctactaaaaatacaaaattagccgggcgtggtggcatgtgtctgtagtctcagctacttgggaggttgaggcaggagaatcgcttgaaccttggggcagaggttgcaatggacctagatcacgccactgcactccagcctgggtgacaaagcaagattctgtctcagag-aaaaaaaaaagaagatttagtgttacttatcttttggcactgcttcccatacaatgttatcaactaagatttagcaaagatgtcaaaaaattgaaaacatttgaccaaaacagaatgacagtttattgttttttattttattatttttttgagacagggtctcaccctgttgcccaggctggagtgcagtggtgaaatcatggctcactgcagcctcaacctcccaggctcaggtgatcctccaccttagtatcccaagtagccaggactatgagcacttgttacgacacatagctagcttttgtattttcagtagagatgcggttttgccattttgcccaggctggacttgaactcctgggctcaagtgatccacccaccttggcctcccaaagggcaggaattacagacatgagccgctgcacacagccacatgtcatttttaaataacagtcattcatttaattagcatgacaaccaaaagacatcaaaagcaacgtagaaggttacatggatgtgataactgaaaaccctcagttttcccaagtaattaaaaaaaaataaaggcaacacatggattatcttgataaaacctaaaatctttattacaggccagtcatttaaagggtaaaactcctgtggcataactgtgtcttcttacgggaagctaatttaaatcacttggaagtcaattccgatgacaaggagacttgaatttaattagacatagaaagagtttgtccagggtcatgagtgagcataatattacaaaggaatgtcaacaggaaaaccagagcatagagcagtggggatccatagctcacaatgatagcaagaaagtttcctggttacatgaagtaattaagacatatttaaaagccaagagtataaaattagacctgatgaaaaagctgaaggagttatcatcccagccaagcaggaaacccaagccttttattccttctcaagaaggaacaggagacagtgatgtgatctgtgagtcatgtgtaacatgaaagtacaggagaagttgaacttctgatatacaaatctgaaaag-attttatagtaacagatttcaggattaaaagtcaatatttattacctcttattatgagcaaataaatacattaagaaaaccttgttgttttaaccaaaatttttagttttttatcactgtttttaatattatagctaatttaaataaactttataaacaatctatctgatctcaatcagttttggcctcgatgtaagatttacataaacttttaataaccttgtataattttttcatctttcccaactttttatacacatgtagttttatctatcttttttattccttcaatttaaattaatccttaaaaatctctaagtgaatttactttctctgaaacaaaaaccggtatacattttgcatacagaattgtttctcttgtatctagtagtcttaatcacacatatctagcaagatattaacacttagtaacccttattttaataaaaaacctaggaagcaagaaatctggaattgtcatatagcagtatcttacatatgagaataatttcataatttagaattgtgtgttcctaaaacatattttttaagatggatttttgctcttgttgcccaggctggagtgcaatggtgtgatctcagctcactgcaatctccgccccccaggttcaagtaattctcctgcctcagcctcccgagtagctgggattacaggaacccaccaccacacctggctaattttttgtattttttagtagagatggggtttcaccatgttgatcaggctggtcttgagctcctgacctcgggtgagccacccaccttggcctcccaaagtgcagggattacaggcgtgagccacagtgcctgggctaaaacataagttttaaattggaaataacccagatatttaatgagtatctattatttaatttaacataactaaaatttcaaaaataggctgggcatggtggctcacacctgtaatcc s panTro2.chr4_random 3474399 3332 + 6711082 aaaaaaattcttgactttggaaaacaaaacataaagagaatcaacaatgtttccaatggaagggccatgaataaaatcttttccttcttttataagttcagtcccatgtaactaaatcttgttctgcttgatttcaaatagcaattctcattcagttttttgtgttttgcttgatttcaattggaaattctcattcagctttttacagtcctggaagattttcctagtccaacagtatgatccccaaagttatctgaaaccatatttaagagaacttgtcagagtcctttccattaaaagtaatttagatgatagctgattgtaaaggcttttttttttttttttgagacattgtctggctctatcactcaggatggagtgcagtggcatgatcttggctcaccgcaatctctccctcctaaactcaagccatcctcctacctcagcctccaaagtagctgggaccataggcatgcaccatcatgctggctaatttctgtatttttgtagagacagggttttaccatgttgcccaggatgctttcaaacttttgagttcaagcaattcacccaccttggccttgcaaagtgctgggatttttacacgcgtgagccaccatgccctgcaccatgcccagcaccatgccctgcacagcctccagcagcatgcccggcctgtaaagggttttagagaggaactttaaacaatcaccgtggatgacaaaaacttagaatatcctttggttaaaatccagtggaagttctcaactggagagaaaatttagttatttctattatatgtagcattttaagataacagccagaatcatgactgacagcaacacatcagatccatcagacttccacaaattttatataatctttggaatatttatattaataatatatctatacatatacaactttatagaatatttaacatcatcaaaattatgactgataccatattagatttttataatttatataacatttaaaatatttatattaataatatacctataaatgtaaccaaaagaagatttagaccaggcacagtggctcatgcctgtaatcccaacactttgggaggccaagttcgacagatcatcagaggtcaggacttcgacacaagcctggccaacatgtagaaatcttgtctctactaaaaatacaaaattagccaggcgtggtggcatgtgtctgtagtcccagctacttgggaggttgaggcaggagaatcgcttgaaccttggggcagaggttgcagtgaacctagatcacgccactgcactccagcctgggtgacaaagcaagattctgtctcagagaaaaaaaaaaagaagatttag----acttatcttttggcaatgctttccatacaatattatcaactaagttttagcaaagatgtaaaaaaattgaaaacatttgaccaaaacagaatgacagtttattgttttttattttattatttttttgagacagggtctcaccctgttgcccaggctggagtgcagtggtgaaatcatggctcaatgcagcctcaacctcccaggctcaggtgatcctccaccttagtctcccaagtagccaggactatgagcacttgctaccacacctagctagcttttgcatttttagtagagatggggttttgccattttgcccaggctggacttaaactcctgggctcaagtgatccacccaccttggcctcccaaaaggctggaattacagccatgagccactgcacacagccacatgtcatttttaaataacagtcattcatttaattagcatgacaaccaaaagacatcaaaagcaacatagaaggttacatggacgtgaaaactgaaaaccctcagttttcccaagtaatt-aaaaaaaataaaggcaacacatggattatcttgataaaacctaaaatctttattacaggccagtcatttaaagggtaaaactcctgtggcataactgtgtcttcttacaggaagctaatttaaatcacttggaagtcaattccgatgataaggagacttgaatttaattagacatagaaagagtgtgtccagggtcatgagtgagcataatattacaaaggaatgtaaacaggaaaaccagagcatagagcagtggggatccatagctcacaatgatagcatggaagtttcctggttacatgaagtaattaagacatatttaaaagccaagagtacaaaattaGACCTGATGAAAAACCTGAAGGAGTTATCATCACAGCCAAGCCGGAAACCCAAGCCTTTTATTCCTTCTCAAGAAGGAACAGGAGACAATGATGTGATCTGTGAGTCATGTGTAACATGAAAGTACAGGAAAAGTTGAGCTTCTGATATACAAATCTGAAAAGTTTTTTATAGTaacagatttcaggattaaaagtcaatatttattacctcttattatgagcaaataaataccttaagaaaaccttgttgttataaccaaaatttctagtttt-----aatgtttttaatattacagctaatttaaataaactttataaacaatctatctgatctcaatcagttttgacctcgatgtaagatttacataaacttttaataaccttgtataattttttcatctttcccaactttttatacacatttagttttatctatcttttttattccttcaatttaaaataatccttaaaaatctctaagcgaatttactttttctgaaacaaaaaccggtatacattttgcatacagaattgtttctcttgtatctagtagtcttaatcacatatatctaccaagatattaacacttagtaacccttattttaataaaaaacctaggaagcaagaaatcttgaattgtcatatagcagtatcttacatatgagaataattttataatttagaattatgtgttcctaaaacatattttttaagatggattttcactcttgttgcccaggctggagtgcaatggtgtgatctcatctcactgcaacctccgtcccccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggaacccagcaccacacctggctaattttttgtattttttagtagagatggggtttcactatgttgatcaggctggtcttgagctcctgacctcgggtgagccgcccaccttggcctcccaaagtgcaggg-ttacaggcgtgagccatagtgcctgggctaaaacataagttttaaattggaaataacccagatatttaatgaatatctattatttaatttaatataactaaaatttcaaaaataggctgggcatggtggctcacacctgtaatcc i panTro2.chr4_random I 52714 C 0 e ponAbe2.chr3 42356203 4328 + 202140232 I a score=261518.000000 s hg19.chr4_gl000194_random 132488 1019 + 191469 caacactttaggaggcctaggcagcagtatcatgaaaccagcctgagcaaaatagtgagatgctgactctacaaaaaaaataaaagttagctgaccacggtggtgtatgcctgtaattaacagctacatgggaggctgaggtgggaggatcccttgagagcagaaggtcaaggttgcagtgagctgtgatcatgccactgcacttcagcgtgggtgacagacagagacactgtctcaaaaaaatttcaaaaatacattaagatgtct------------------tgtatagacatttatccatttacatttacttatttttgacagtttatctagagtatttgtgagaactgaggtattagacaaagctagtcatcatttctaggttattttcttgttaaccatgttatagcctgtgaatatcaggtgttcacgtaagtgaggacttcaaagttaaatacatgggtattttaccaataactcagaaaattccattatttttgttcaacaaaccatattaaattggtcttatgtatttaaaaaatcacataaacaaatattc-ttttttcctgtgtttatagctttataaccttcatgccaaaccctagcaccttaaaatatctagcaaatgtaaatataaaacacagtcaaaaatgtatgctgacaagtctgaagagatttctattttctatttttattttatcaatactttttaaattatttgtatttataaaagaA--CTCTTTTGTctgggcacagtggttcatgcctgtatcccagcactttgagaggctgaggcaagaggatcatttgagctcaggagtttgagaccagcctgggcaacatagtgagacccaatctctactaagaataagataaaaaattgccaggcatggtggtgcatgcctattgtcccagctactagagaggatgaggcaggaggattgcttgagcctgggaggttgagataacagtgagctacgatcccactactgcactccagtctggggaacagagtgagaccttagagtgagacctt s panTro2.chr4_random 3477731 1015 + 6711082 caacactttaggaggccaaggcaggagtatcatgagaccagcctgagcaaaatagtgagatgctgactctacaaaaaaaaaaaaagttagctgaccatggtggtgcatacctgtaattaacagctacttaggtggctgaggtgggaggattccttgagcgcaggaggtcaaggttgcagtgagctgtgatcatgccactgcacttcagcctgggtgacagacagagacactgtctcaaaaaaatttcaaaaatacattaagatgtct------------------tgtatagacatttatccatttacatttacttatttttgacagtttatctagagtatttgtgagaactgaggtattagacaaagctagtcatcatttctaggtttttctcttgttaaccatgttatagcctgtgaatatcaggtgttcacgtaagtgaggacttcaaagttaaatacatgggtattttaccaataactcagaaaattccattatttttgttcaacaaaccgtgttaaattggtcttatgtatttaaaaaatcacataaacaaatattctttttttcctgtgtttgtagttttataaccttcatgccaaaccctagcaccttaaaatatctagcaaatgtaaatataaaacacagtcaaaaatgtatgctgacaattctgaagaca-------tttttatttttattttatcaatactttttaaattatttgtatttataaaagaACTCTCTTTTATctgggcacagtggttcgtgcctgtatcccagcactttgagaggctgaggcaagaggatcacttgagctcaggagtttgagaccagcctgggcaacatagtgagacccaatctctactaagaataagataaaaaattgccaggcatggtggtgcatgcctattgtcccagctactagagaggatgaagcaggaggattgcttgagcctgggaggttgagataacagtgagctatgatcccactactgcactccagtctggggaacagagtgagaccttagagtgagacctt i panTro2.chr4_random C 0 I 2003 s ponAbe2.chr3 42360531 1028 + 202140232 caacactttaggaggccaaggcaggagtatcatgagaccagcctgagcaaaattgtgagatgctgactctacaaaaaaaataaaaattagctgagcacggtggtgcatgcctgtaatt-acagctacttgggaggctgaggtaggaggatcccttgagcgcaggaggtcaaagttgcagtgagctgtgatcataccactgcacttcagcctgggtgacagacagagataccatctcaaaaaaaTTTCAAAAATACATTAAGATGTCTTTTAGACATCTTAATGTCTTtatagacatttatccattta-atttacttatttttaacagtttatctagagtatttgtgagaactgaggtattagacaaagctagtcatcatttctaggttattttcttgttaaccatgttatagcctgtgaatatcaggtgttcacgtaagtgaggacttcaaagttaaatacatgggtattttatcaataactcagaaaattccattatttttgttcaacaaaccgtattaaattggtcttatgtatttaaaaaatcacaaaaacaaatattc-ttttttcctgtgtttatagctttataaccttcatgcctaaccctagcaccttaaaatatctagcaaatgtaaatataaaacacagtcaaaaatgtatgctgacaattctgaagaca-------tttctacttttattttatcaatactttttaaattatttgtatttataaaagaA--CTCTTTCATctgggcacagtggttcatgcctatatcccagcactttgagaggctgaggcaagaggatcacttgagctaaggagtttgagaccaacctgggcaacacagtgcgacccaatctctactaagaataacataaaaaatcaccacgcatggtggtgcatgtctattgtcccagctactggagaggatgaggcaggaggattgcttgagcctgggaggttgaggtaacagtgagctatgatcccactactgcactccagcctggggaacagagtgagaccttagagagagacctt i ponAbe2.chr3 I 4328 C 0 a score=47409.000000 s hg19.chr4_gl000194_random 133507 190 + 191469 gtctcaaaaagaga--aaaaaataaagaaTTGTTTCATTCTTTTGTTTTTCTTCAGccaagtgaccttgaattagtaacaccacagacagtaagtcttatctcaacaccagtagacaaatcagcagattcaaagtaggcagggaaaaaaaa-atagataggcaaaagaactgagactttttcactttagggtt s ponAbe2.chr3 42361559 191 + 202140232 gtctcaaaaagaga--aaaaaataaagaaTTATTTCATTCTTTTGTTTTTCTTCAGccaagtaaccttgaattggtaacaccacagacagtaagtttcatctcaacatgagtagacaagtcagcagattcaaagtaggcagggaaaaaaaaaatagataggcaaaagaactgagacttgttcattttagggtt i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3480749 191 + 6711082 gtctcaaaaagagagaaaaaaataaagaaTTGTTTCATTCTTTTGTTTTTCTTCAGccaagtaaccttgaattggtaacaccacagacagtaagtcttatctcaacaccagtagacaaatcagcagattcaaagtaggcagggaaaaaaaa--tagataggcaaaagtactgagaatttttcattttagggtt i panTro2.chr4_random I 2003 C 0 a score=20302.000000 s hg19.chr4_gl000194_random 133697 73 + 191469 tttaaaaatagt--aactatttgagttctgaattttctttcatgtaatttggccatcaggtttaaagtgtgcact s panTro2.chr4_random 3480940 70 + 6711082 tttaaaaatagt--aactatttgagttctgaattttctttcatgtaatttggccatcaggtttaaagtgtgc--- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42361750 73 + 202140232 tttaaaaataga--aactatttcagttctgaattttctttcatgtaatttggccatcaggtttaaagtgtgcact i ponAbe2.chr3 C 0 C 0 s tarSyr1.scaffold_143423 271 45 + 4314 ttttcaaataataaaactatttgagctctcaattttccttgatat------------------------------ i tarSyr1.scaffold_143423 N 0 I 61 a score=77754.000000 s hg19.chr4_gl000194_random 133770 353 + 191469 agaggtcaggtgcagtggctcatgcgtgtaatcccaacactatcggaggctgaggcaggtggatcacttgaggccaggagtttgagaccagcctggccaatgtgacaaaaccccatctctactgaatatacaaaaattaactgggtgtggtagtgtgcatctgtagtcccagctattcagaaggctgaggcaggataattgctcaaacctgggaggcggaggttgcagtgagctgcgattgtaccaccatactccatcctgggcaacagagcaagactctgtgtcaaaaagaaaaaggaaaaaaaaagtatatatatatgt----------------------------ataggctgggcacagtggctcatgcctgtaat s ponAbe2.chr3 42361823 351 + 202140232 agaggccaggtgcagtggctcatgcctgtaatcccaacactttgggaggctgaggcaggtggatcacttgaggccaggagttcaagaccagcctggccaacatgacaaaaacctgtctctactgaaaatacaaaaattaactgggtgtggtggtgtgcacctgtagtcccagctactcaggagtctgaggcaggagaattgctcaaacctgggaggtggaggttgtagtgagctgagattgtaccaccgtactccagcctgggcaacagagcaagactctgtgtcaaaaaga--------aaaaaatatatatatataaat----------------------atatatataggctgggcgcagtggctcatgcctgtaat i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3481010 353 + 6711082 -------------------------gtgtaatcccaacactatgggaggctgaggcaggtggatcacttgaggccaggagtttgagaccagcctggccaacgtgacaaaaccccatctctactgaaaatacaaaaattaactgggtgtggtggtgtgcacctgcagtcccaactattcaggaggctgaggcaggataatcgctcaaacctgggaggcggaggttgcagtgagccgcgattgtaccaccatactccatcctgggcaacagagcaagacactgtgtcaaaaagaaaaag---aaaaaaagtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATAggctgggcagagtggctcatgcctgtaat i panTro2.chr4_random C 0 C 0 e tarSyr1.scaffold_143423 316 61 + 4314 I a score=13620.000000 s hg19.chr4_gl000194_random 134123 51 + 191469 cccagcagtttgggaggccaaggcgggtggatcacttgagatcaggagtta s panTro2.chr4_random 3481363 51 + 6711082 cccagcagtttgggaggccaaggccagtggatcacttgagatcaggagttt i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42362174 51 + 202140232 cccagcagtttgtgaggccgaggtgggtggatcacttgaggtcaggagttc i ponAbe2.chr3 C 0 C 0 s tarSyr1.scaffold_143423 377 29 + 4314 tccagtattttgggaagtcgaggtgggag---------------------- i tarSyr1.scaffold_143423 I 61 I 22 a score=15787.000000 s hg19.chr4_gl000194_random 134174 51 + 191469 gagagcagcctggccaacatggtgaaacttcatctctactaaaaccacaaa s panTro2.chr4_random 3481414 51 + 6711082 gagaccagcctggccaacatggtgaaacctcatctctactaaaaccacaaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42362225 51 + 202140232 aagaccagcctggccaacatggtgaaacctcatctctactaaaaccacaaa i ponAbe2.chr3 C 0 C 0 s tarSyr1.scaffold_143423 428 43 + 4314 -aagacagtctaggcaacatagtaagacctacac------aaaatcaaaa- i tarSyr1.scaffold_143423 I 22 N 0 a score=191095.000000 s hg19.chr4_gl000194_random 134225 751 + 191469 aattagccgggtatggtggcgcacacctgtaatcgcagctactcaggaggctgagacaggagaattgcttgaacctgggaagtggaggttgcagtgagccaagatcacaccactgcactccagcatgggcaacagagcaagactctgtctcaaaaaaatgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtg------------gctagaatggtccataatatatagccagctcgagtcctagaaaacctagcaagcttAAGGTTAGAGCTTCTCATTTTGGCCTTTTCAAGATTAAATCTCCTTTAGTAGGCCCTTCCCCTCTAGGGAGGTACTTGCCGGAGCGCTGCCTGAAGTTGGTTTTCTGATGCCCTGTTGTTTCTGTTCTGAATGGTTTATTTCTCATTATAAGAGCTCAGCaaagcaggcagagttaaaaagcagagacatgaaggc--tttaaaatcatggacttcactcctacactgaatctcaggtccccagaaagacagaaacaccatgggacCACAGCAAAGGCAGAAGGAGGAGTGAGAGAGGGAGGTGGACAGAACAACAAACAGGAGTTGGCTCTCATTTTTTCACGCGTGCCATTTTCTTTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAGTTGAGCACACAGATAAACTAGAGATCTCA--AGGCTTTTGCTGAGAACATCAAAGCCTTTAACCTCTGTTGGGCCAAATA-TTTAGACCAAAAATACAGACAGACACACAAAAG s panTro2.chr4_random 3481465 765 + 6711082 aattagccgggtatggtggcacacacctgtaatcgcagctactcaggaggctgagacaggagaattgctcgaacctgggaagtggaggttgcagtgagccaagatcacacccctgcactccagcatgggcaacagagcaagactctgtctcaaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctagaatggtccatagtatatagccagctcgagtcccagaaaacctagcaagcttAAGGTTAGAGCTTCTCATTTTGGCCTTTTCAAGATTAAATCTCCTTTAGTAGGCCCTTCCCCTCTAGGGAGGTACTTGCCGGAGCGCTGCCTGAAGTTGGTTTTCTGATGCCTTGTTGTTTCTGTTCTGAATGGTTTATTTCTCATTATAAGAGCTCAGCAAAGCAGGCAGAGTTAAAAAGCAGAGACATGAAGGC--TTTAAAATCATGGACTTCACTCCTACACTGAATATCATGTCCCCAGAAAGACAGAAACACCATGGGACCACAGCAAAGGCAGAAGGAGGAGTGAGAGAGGGAGGTGGACAGCACAACAAACAGGAGTTGGCTCTCATTTTTTCATGCGTGCCATTTTCTTTAGGTTTTTCTAGTTTATGGAGTCTGTTTGTTCCAGTTGAGCACACAGATAAACTAGAGATCTCACAAGGCTTTTGCTGAGAACATCAAAGCCTTTAACCTCTGTTGGGCCAAATA-TTTAGACCAAAAATACAGACAGACACACAAAAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42362276 747 + 202140232 aattagccgggcatggtggcacacacctgtaattgcagctactcaggaggctgagacaggagagtcactagaacctgggaagtgtaggttgcagtcagccaagatcacaccactgcactccagcctggacaacagagcaagactctgtctcaaaaaaatgtgtgtgtgtgtgtgtgtgtctgtgtg------------------actagaacggtctataatatatagccagctcgagtcccagaaaacctagcaagcttaagtttagagcttctcattttggccttttcAACATTAAATCCCCTTTAGTAAGCCCTTCCCCTCTAGGGAAGTACTTGCCGGAGCACTGCCTAAAGTTGGTTTTCTGATGCCCTGTTGTTTCTGTTCTGAATGGTTTATTTCTCATTATAAGAGCTCAGCAAAGCAGGCAGAGTTAAAAAGC--AGACATGAAAACTTTTTAAAATCGTGGACTTCACTCCTACACTGAA-ATCAGGTCCCCAGAAAGACAGAAACACCATGGGACCACAGCAAAGGCAGGAGGAGGAGGGAGGGAGGGAGGTAGACCGAACAACAAACAGGAGTTGGCTCTCAATTTTTCACATGTGCCATTTTCTTTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAGTTGAGCACACAGATAAACTAGAGATCTCACAAGGCTTTTGCTGAGACCATCAAAGCCTTTAGCCTCTGTTGGGCCAAATATTTTAGACCAAAAATACAGATAGACACACAAAAG i ponAbe2.chr3 C 0 I 26895 a score=238872.000000 s hg19.chr4_gl000194_random 134976 2756 + 191469 CCAGAACCGGACCAGATTGAGTAGCTTAGTGGCTACAGCCTTTATTCCCTTTATTCTTTAGGATACGAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGACCCCCCTGGGGTGAAACTGAAACCCCACAGTCTAGACAAGGTTGGGGGTCtttttttatttttta--tttttttgagatggagtttcactcttgttgcccaggctggagtgcaattttgcaatattgcctcaccgcaacctccgcctctcaggtttaagcacttatcctgcctcagcctcccaagctgggattacaggcttgtgccaccacgcccagctcattttgcatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcccaacctcgggtgatccgcacacctaaacctcccaaagtgttgacattacaggcatgagccaccgtgcccggccTGCTTGTTCTTTTCATTTCATCCTGATCTCCGAATACAGAAGAGTAGCTGATTTGTTGTTCACTAACAAGCACAGAAGCTTTGTTACATTTACAGTGTCATTCTTGGCAAAACCTGaagttttgcctcccgggttcacgccattatcctgcctcagcctcctgagtagctgggactataggcgcccgccacctcacccagctaatcttttgtatttttagtagagacggggttttgccgtgttagccaggatggtctctatctcctgaccttgtgatccgccctcctcggccttccagagtgctgggattacaggcgtgagccaccgctcccagccAGAAGCTCTAATTTCAATGATGATTGTGCTTTTTCtctcttcctcagcatctggctcatgataaaatttcaggtgtcttgatggtatctaaatcagttgttgattcggtcctggagaaacagaagcataacctctatgccaagttataattttacctatttcccaactttttgttatttgatctctccaccaaaccagttggtctgcttctgtctttgcagctggtttctgtagatgctgttcagcttctggtaacatctggcctttgggcaggctcaaaaatttgaaagtt---aatgcaagattcaattgtgtatgggctatcccgtaatccctgtttctcccccttttttgtttttTAttatcagttgttcatctgtatgaaatcttaactgagcattttcaattaactgtgtggaatgacccatgtatgaagaatcagaaatcacattaacaggcatatcaaaagcagtcaacacctcaattacagctacaagctctgccttttgagctgaagtatagggtgtctggaaaactttagcttttgatccagaataagaacctttaccattactagacccatctgtgaaacaatgaaaacgcttagcaggctgcaggttgtttactgcaggaattgtaaatgcaaaccgttcacagtcttgctcagctaaaagggtagtaaagaaacagtcttttaaatctgtgactattaaaggccaattttttggaattatagta-gagaagggaatcctggctgttatatttccataggttgtataactgaattgatggctcttaagtcagttaacattctccatttacctgattttttcttaattatgaaaactggagaattccaaggggaaaatgttggagctatgtgcccattttctaattgttcagtaactaatttctctaaagcatccagtttccctttgcttagcagccattattctatccaaattggcttatctgttaaccattttaaaggtataggttctggaggcttaactatggccaccatcaaaaattgtatcctaatctttggcaggaactttgtctttccgtttgaagcagttctttcaaaccttgcaattttttttctactcctataccagggacatgccccatttcgtgcatcatatgttgactttgagggctgtataattgttatggaattagaacttgtgctccccattgtcataataaatctctcccccataaatttataggtacaggagttacaattggttgaacagtcccaggttgtccattgggcccttcacaatgcaaagtatagctactctgataaacttctggagctttagcagtttccactgtgttaaattgagtgggttgaattggccacgtggacggccagtgctgtagagaaataattgaaatgtccactcctaccaaaaaaaaaaaaaaaaaaagtatctaccaaacctttaaagttctttccctggatagttatttcacaggtaggatgtttatcagtaatttgatttacccaataagctgccttgccttttttatttgtgcttccaaatcctccagttcatttaatttcactttttcccattcccacatatggctcactcaggagctgtgctaaggcacactcctggctgtgctttccagggaacagaactaaatatcacaatttgaatttcctcattgtaatctgaatcaatgactccagtgtgtatttgtaccccttttaaacttaaactagaccttcctaaaagtaatcccattgtccctcctggcaacggtccacagactcctgttgggacctttggcgggggttccccaggcagaaggctcacagcttttgtgcagcatagatctactgcagcactatgggctgtggtggggaa-agataacgtatgggggtgagggaatggcctgagatggaaatgccctggtttagaacagggcctgggatgggcccctcagggagtt s panTro2.chr4_random 3482230 2749 + 6711082 CCAGAACCAGACCAGATTGAGTAGCTCAGTGGCTACAGCCTTTATTCCCTTTATTCTTTAGGATATGAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGACCCCCCTGGGGTGAAACTGAAACCCCACAGTCTAGACAAGGTTGGGGGTCAttttttattttttatttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatgaggcaatattgcctcaccgcaacctccgcctctcaggtttaagcacttatcctgcctcagcctcccaagctgggattacaggcttgtgccaccacgcccagctcattttgaacttttagtagagacggggtttctccatgttggtcaggctggtctctaactcccaacctcgggtgatccgcacacctaagcctcccaaagtgttggcattacaggcatgagccactgcgcccggccTGCTTCTTCTTTTCATTTCATCCTGATCTCCGAATACAGGAGAGTAGCTGATTTGGTGTTCACTAACAAGCACAGAAGCTTTGTTACATTTACAGTGTCATTCTTGGCAAAACCTGaagttttgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactataggcgcccgccacctcacccagctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccaccttggcctcccagagtgctgggattacaggcgtgagccaccacgcccagccAGAAGCTCTAATTTCAATGATGATTGTGCTTTTTatctcttcctcagcatctggctcatgataaaatttcaggtgtcttgatggtgtctaaatcagttgttgattcggtcctggagaaacacaagcataacctctatgccaagttataattttacctatttcccaactttttgttattggatctctccaccaaaccagttgttctgcttctgtctttgcagctggtttctgtagatgctgttcagctgctggtaacatctggcctttgggcaagcccaaaaatttgaaagttaacaatgcaagattcaattgtgtatgggctatcccataatccctgtttctccctcttttttg-tttttAttatcagttgttcatctgtatgaa-----aactgagcattttcaattaactgtgtggaatgacccatgtatgaagaatcagaaatcacattaacaggcatatcaaaagcagtcaacacctcaattacagctacaagctccgccttttgagctgaagtatacggtgtctggaaaactttaccttttgatccagaataagaagctttaccattactaga-ccatctgtgaaacaatgaaaacgcttagcaggctgcaggttgtttactgcaggaattgtaaatgcaaaccgttcatagtcttgctcagctaaaagggtagtaaagaaacagtcttttaaatctgtgactattaaaggccaattttttggaattatagcaggagaaggcaatcctggctgttttatttccattggttgtataactgaattgatggctcttaagtcagttaacattctccatttacctgattttttcttaattatgaaaactggagaattccaaggggaaaatgttggagctatgtgcccattttctaattgttcagtaactaatttctctaaagcatccagtttctctttgcttaacagccattattctatccaaattggcttatctgttaaccattttaaaggtataggttctggaggcttaacagtggccaccatcaaaaatggtatcctaatctttggcaggaactttgtctttccgtttgaagcagttctttcaaatcttgcaa-tttttttctactcctataccagggacatgccccatttcgtgcatcatatgttgactttgagggctgtataattgttatggaattagaacttgtgctccccattgtcataataaatctctcccccataaatttataggtacagaaattgcaattggttgaagagtcccaggttgtccatcgggcccttcaaaatgcaaaatatagctactttgatacacttctggagctttagcagtttccactgcgttaaattgagtgggctgaattggccacatggacagccagtgctgtagagaaatgattgaaatgtccactcctaccaaaaaaaaatgtcca-----ctcctaccaaacctttaaagttctttccctggatagttatttcacagataggatgtttatcagtaatttgatttacccaataagctgccttgccttttttatttgtgcttccaaatcctccagttcatttaatttcactttttcccattcccacatacggcacactcaggagctgtgctatga-gctctcctggctgtgctttccagggaacagaagtagatatcacaatttgaatttcttcattgtaatctgaatcaatgactccagtgtgtatttgtaccccttttaaacttaaactagaccttcctaaaagtaatcccattgtccctcctggcaatggtccacagactcctgttgggaccttttgtgggggttccccaggcagaaggctcacagcctttgtgcaccataaatctactgcggcactatgggatgtggtgggggacagataatatttgggggtgagggaacggcctgagctggaaatgccctggattagaacagggcctgggatgggcccatcaggaagtt i panTro2.chr4_random C 0 I 5027 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=0.000000 s hg19.chr4_gl000194_random 137732 36 + 191469 tcccaaaatcgggttcccttctttatcaaacttaga e panTro2.chr4_random 3484979 5027 + 6711082 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=323016.000000 s hg19.chr4_gl000194_random 137768 3577 + 191469 gtgacactgattagcccaaagttttc-ttttttacattttggacatatttcaggatcagcagttttgttttttcccctatctggtggcctgactcggtgattttttttttttttaacattctttttagtatgaccatgcttcccac-agttaaaacaagctccaggaaatagagtatttcctttacccactctcagtcctgccatcgcctgtgccaacaaagtagctttatgtagattatctctgatatcatcacaggccttgttataatcaactaaatgtgctttccctctgataggtcgcagagcagcctggcaataaggattagcattgtcaaaaccaataactgcaacactatatcctaagcagccaaatctgcaatcatctttttaagagactcctgtaaccaagctataaaatccacatatggttctcttggtccctgttttatagcactaaaggaagggtattgttctccacatgaagtgatttattccaagctctaatgcacactcctctaagctgttctatggcatcatcctgcatgaccacttgttcatgtaaaccagccctgccaccaacccccaaaagttggtctgtagttatattaatttgaggttgggcccaggcattgcgagcagcctgaatggaagcttcatctgcctactaagttttaaattgtaagaactgagcaggagttagacaagctagagtaaaagtgtcccagtcagtaggaatcatccgactggaaacagcaacattctttaacagtcccatttcaaaaggagaacctggtccatactgatttatagcttgtttaatttttttgagtaatttaaaaggaaaaggctcaaatgtagctataatatttccctgttgatctggggggtgtattcaaacagggaactgccaagcctctaaatcccacttttatctagcttgctgtattcctgcctgaatagaactaagagcagtcgctcaaggcgctgctcgaacagtcaccagggcaactacttttcacccagtgtcctccagaaaagaaagatctggagggtcgctttcttcaaaatagtaatgagggtgtgcagaagaatagggatgaacctctccctccttttctgctttagctttaggtgacaaataaacctggtctgtaacctctgctgttactttgttatactctccttcctcctcatcatcagtgtgaaaaagttccaaggtagaacgaaccacagcccacacttgtcctattgctaccctgatgcttctgagctccccttcttactcaccacgaggattgctttaagagtactcgggtgtcctccagctagttccacattctccaatcgttgctccagcgatcctttgaccagtatttgagcccccatgaatgggcaccacttgctgagaccaggtcggttggagagaccctaacccagcagcactagaggaattaaagacacacacacagaaatatagaggtgtgaagtgggaaatcgggg--gggttgtcttacagccttcagagcagagccctgaacagagatttgcccacgtatttattaacagcaagccagtcattagcattgtttctatagatattagattaactataagtatcccttattcttaaggcacagatcactcatgctattgtttgtggcttaagaatgcctttaagtggttttccaccctggacgggacaggtattccttgttctcattccagtaaacccacaaccttccagcgtgggtgttatggccatcatgaacatgtcacagtgctgcagagattttgtttatggccagttttggggtcagtttatggccggatttggggaggcttgttcccaacagttcctcagggtaagggtgccctaactcctgtggggaccttctttggtggctccccaggaagtaaggagatgggaattgtgctgtagaggtctacagcagcactgcttgctgaggcgggggacaattgctgtacatttgtaagggcagtggctgtgctgggtatgcctcagtttgttgaggggcttgaggcgggtccctcttcctatttcctgaaagaggttgtccatctttgctaaatttagaatgacacggacttgcccagtgattgcctttcttacaccagggacgtacattgggacttttctgttgattgatggtagtagttttcatcttttgaattcctttctacattcctttcttgtgtccaatttgcccacaattaaggcaagagcctgagaaatgaaacatattttttcttactcttaatctagccacagcctgagctaaaagaataaccttatgtaaattatctccaatgccatcgcaagccttaatatatttagttaaatgggccctctctgtctgggatctaatagcagtttgacactctgcattagcattattgtatgcaagaagctgtattacaacatcctgagctgttttgatcatttacggctttatacacagcctcttggagctgagcaataaaattaatatatggttctttaggtccttgtcagacagaactgaaataaggatacttttccccggtaacatttatccttttctatgcatgtaagcacatgaagcacagctgaacaatggcaacatcttccattagtgcttgattctctaatcaaccccagttagggccaactcatattaactgatcaaagaaaacaggcacaggtggctgcacttgtgtgttttcttttgcctgagtttgagcttcatcagcctaccaagttttaaactgcaagtactgagatggagtgagaacaggttttgtcaaagtatcttaattatatggtagtaatctattatcaagagccatatttttaaataaagtttgcacaaaaagagagttcagtccatattgactaatggcttgcttaaattctttagtaacttaaaagagaaagcagcctaattagctatattctgtcctacttgctggattatagtaacgggaaattgccatgcttcaaggtctcccttggctttagctttttgaatagaattttgtctaccaccaccaattgctccaggttttaatgttgtaactacaggagcagtaagtttttcagctaatttattttctcacccatttagaggagagagaggaggtggccattcacttaattcagcaggtggagccaacgggctagtaaaacatactttttaaagtttttctttcttttgtttaatctcctctggtagctgctccccacactcagaatttgaagttagttttttacactcatcctcctcttcctcatctgagtctgcctcatcatctgtttgaaatggctcaagggctgcctttattagtgcccacactgaccatacagaaactagaatttctgctccatctttatatgccttttaaaaaatctcttccaattctctcccattcatccaacttcatagtcctttgttctggaaaccatgggcaaaactgctttactgtactaaagagtgataacaaattctaagtactaattttcattccccatctttgtatgtcctcgggtgtcttttgatgttgtgtcctctgctttcacatg s panTro2.chr4_random 3490006 3572 + 6711082 gtgacactgattagcccaaagttttccttttttactttttggacatatttcagattcagcagttttgttttttcccctatctggtgccctgactcggtgtttttttttttattt------ttttttagtttgac-acgtttcccaccagttaaaacaagttccaggaaatagagtatttcctttatccactctcagtcctgccatcgcctgtgccaacaaagtaattttatgtagattatctctgatatcatcacaggccttgttataatcaactaaatgtgctttccctctgataggtcgcagagcagcctggcaataaggattagcattgtcaaaaccaataactgcaacactatatcctaagcagccaaatcttcaatcatctttttaagagactcctgtaaccaagctataaaatccacatatggttctcctggtccctgttttatagcactaaaggaagggtattgttctccacatgaagtgattttctccaagctctaatgcacactcctctaagctgttctatggcatcatcctgcatgaccacttgtgcatgtaaacctgcccagccaccaacccccaaaagttggtctgcagttatattaatttgaggttgggcccaggcattgcgagcagcctgaatggaagcttcatctgcccactaagttttaaattgtaagaactgagcaggagttagacaagctagagtaagagtgtcccagtcagtaggaatcatccgactggaaacagcaacattctttaacagtcccatttcaaaaggagaacctggtccatactgatttatagcttgtttaatttttttgagtaatgtaaaaggaaaaggctcaaatgtagctataatgtttccctgttgatcttgggggtgtattcaaacagggaactgccaagcctctaaatcccacttttgtctagcttgctgtattcctgcctgaatagaactaagagcagttgctcaaggcgctgctcgaacagtcaccagggcaactacttttcacctagtgtcctccagaaaagaaagatctggagggtcgtttacttcaaaataataatgagggtgtgcagaaggatagggatgaacctctccctccttttctgctttagctttaggtgacaaataaacctggtctgtaacctctactgttactttgttatactctccttcctcctcatcatcagtgtgaaaaagttccaaggtagaatgaaccacagcccacacttgccctattgctaccctgatgcttccgagctccccttctgactcaccacggggattgctttaagagtactcgggtgtcctccagctaattccacattctccaatcattgctccagcgatcctttgacctgtatttgagcccccatgaatgggcaccacttgctgagaccaggtcggttgtagagaccctaacccagcagcactagaggaattaaagacacacacacagaaatatagaggtgtgaagtgggaaatcggggagggggggtcttatagccttcagagcagagccctgaacagagatttacccacgtatttattaacagcaagccagtcattagcattgtttctatagatattagattaactaaaagtatcccttattcttaaggcacagatcactcatgctattgtttgtggcttaagaatgcctttaagtggttttccaccctggacgggccaggtattccttgttctcattccagtaaacccacaaccttccagcgtgggtgttatggccatcatgaacatgtcacagtgctgcagagattttgtttatggccagtttgggggccagtttatggccggatttggggaggcttgttctcaacagttcctcagggtaagggtgccctaactcctgtggggaccttctttggtggctccccaggaagtaaggagatgggaattgtgctgtagaggtctacagcagcactgcttgctgaggcggggaacaattgctgtacatttgtaagggcagtggctgtgctgggtatgcctcagtttgttgaggggcttgaggcgggtccctcttcctatttcctgaaagaggttgtccttctttgctaaatttagaatgacacggacttgcccagtgattgcctttcttacaccagggacgtacattgggacttttctgttgattgatggtagtagttttcgtcttttgaattcctttctacattcctttcttgtgtccaatttgcccacaat-aaggcaagagcctgagaaatgaagcatattttttcttactcttaatctagccacagcctgagctaaaagaataaccttatgtaagttatctccaatgccatcgcaagccttaatatatttagttaaatgggccctctctgtctgggatctaatagcagtttgacactctgcattagcattattgtatgcaagaagctgtattacaacatcctgagctgttttgatcatttacggctttatacacagcctcttggagctgagcaataaaattaatatatggttctttaggtccttgtcagacagaactgaaataaggatacttttcccctgtaacatttatccttttctatgcatgtaagcacatgaagcacagctgaacaatggcaacatcttccattagtgcttgattctctaatcaaccccagttagggccaactcatattaactgatcaaagaaaacaggcacaggtggctgcacttgtgtgttttcttttgcctgagtttgagcttcatcagcctaccaagttttaaactgcaagtactgagatggagtgagaacaggatttgtcaaagtatgctaattatatggtagtaatctattatcaagagccatatttttaaataaagtttgcacaaaaagagagttcagtccatattgactaatggcttgcttaaattctttagtaacttaaaagagaaagcagcctaattagctatattctgtcctacttgctggattacagtaacgggaaattgccatgcttcaaggtctcccttggctttagctttttgaatagaattttgtctaccaccaccaattgctccaggttttaatgttgtaactacaggagcagtaagtttttcagctaatttattttttcgcccatttagaggagagagaggaggtggccattcacttaattcagcaggtggagccaacgggctagtaaaacatactttt-aaagtttttctttcttttctttaatctcctctggtagctgctccccacactcagaatttgaagttagttttttacactcatcctcctcttcctcatctgagtctgcgtcctcatctgtttgaaatggctcaagggctgcctttattagtgcccacactgaccatatagagactggaatttctgctccatctttatatgccttttaaaaaatctcttccaattctctcccattcatccaacttcatagtcctttgttctggaaaccatgggcaaaactgctttactgtactaaagagtgataacaaattctaagtaataaatttcattccccatctttgtatgtcctcgggtgtcttttgatgttgtgtcctctgctttcacatg i panTro2.chr4_random I 5027 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=263406.000000 s hg19.chr4_gl000194_random 141345 1082 + 191469 ctccagccttccttcacc-gggtctttgtcaccccatgttgggcgccaggaatgttggggtgatcagaccccacactaggtcatgggggtgatgaagtccggaagagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggagaccatcacgagtgtggagtctgcaaagtccccaagctctgggagcccacgctatttgttggtgctcaaacaaacaggtggtgaggatttaggggttgaaaggaaatggtgtatcaagtgaatgagaaacatatg------------------------------------------------------------gccctgcctcagcttctcttccaacactcagtttttctcccaACAcattccccttatgaacaggaataaaatagggatgcctgttctcaccacccctgtttaacaagtcctagccagagcaatcaggcaagagaaagctataaaaggtatccaaataggaaatgaagtcaaattatctctcttcactgatgatatgattctacacctagaaatccctaaagactgtgccaaaaggctcctagaactgataaaaaaaaacttcagcaaactttcaggattaaaa-aaaatcaacatatagaaagaagtatcatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagagtgcaatcctgtttacaacagcaacccccaaaataaaataaaagaaaagaagaatatgtctaaccaaggaggtaaaggatatctaaaaggagaactacgaaacactgcagaaagaaatcatagatgacaaagcaaatggaaaactattccatgctcatggattagaaagatcaatattgttaaaatggctatactgccaaaagcaatctacacattcaacactattcctatgaaacaaccaatgtcgtttttcacagaattagaaaaaaatatattctaaatttcatatggatttttaaagagcccagacaaccaaaggaaacctaagc-aagaagaacaaagctggagacatcacattacttgacttcatactataccctaaggccacaatagacaaaatagcatggtagcgatatgaaaacagacacaaagaccagtga s rheMac2.chr2 266602 1140 + 189746636 ctctagcattccttcaccggggtctttgttgccccatgttaagagccaggaaAgttggagtgatcagacccaacactaggtcgtgggggtgatgaagtccggtggagtcaaaggagtgag--aaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtgtggtggctgtgaagactctgagctctgggagctgacgttatttattggtgctcaaagaaataggtggtgagtatgtctgggttgaaaggaaatggtgtctcaagtgaatgagaaacatatggctacttgagataatgggagtgctagaagcaaggagccagcaagtctatcaaacatggaagccttgcctcagcttctctcccatcactcagtttttatcccaACAcattccccttaagaacaggaataaaatagggatgcctgttcttaccactcctgttcaacaagtcctagccagagtaatcaggcaagagaaagagataaaaggcatcaaaataggaaataaagtcaaattatctttcttcactgatgatatgattctatacatagaaaaccctaaagaccatgctaaaaggttcctagaactgat---aaacaacttcagcaaagtttcaggattaaaataaaatcaacaaacaaatagaagtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacctccaaaataagataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattgttaaaatggctatactgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtcatttttcacagaattagaaaaaaaaatattctaaaattcatatggatttttaaagagcccagaaaaccaaaggaaacctaagcaaaaaagaacaaagttggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagaccaatga i rheMac2.chr2 N 0 C 0 s panTro2.chr4_random 3493578 1079 + 6711082 ctccagccttccttcacc-gggtctttgtcaccccatgttgggcgccaggaatgttggggtgatcagacccaacactaggtcatgggggtgatgaagtccggcagagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggagaccatcacgagtgtggagtctgcaaagtccccaagctctgggagcccacgctatttgttggtgctcaaacaaacaggtgttgaggatttaggggttgaaaggaaacggtgtatcaagtgaatgagaaacatatg------------------------------------------------------------gccctgcctcagcttctcttccaacactcagcttttctcccaACAcattccccttatgaacaggaataaaatagggatgcctgttctcaccactcctgtttaacaagtcctagccagagcaatcaggcaagagaaagcgataaaaggcatccaaataggaaatgaagacaaattatctctcttcactgatgatatgattctacacctagaaatccctaaagactgtgccaaaaggctcctagaactgataaaaaaaaacttcagcaaactttcaggattaaaa-aaa-tcaatatatagaaagaagtatcatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagagtgcaatgctgtttacaacagcaacccccaaaataaaataaaagaaaagaagaatatgtctaagcaaggaggtaaaggatatctaaaaggagaactacaaaacactgcagaaagaaatcatagatgacaaagcaaatggaaaactattccatgctcatggattagaaagatcaatattgttaaaatggctatactgccaaaagcaatctacacattcaacactattcctatgaaacaaccaatatcgtttttcacagaattagaaaaaaaaat--tctaaatttcatatggatttttaaagagcccagacaaccaaaggaaacctaagc-aagaagaacaaagctggagacatcacattacttgacttcatactataccctaaggccacaatagacaaaatagcatggtagcgatatgaaaacagacacaaagaccaatga i panTro2.chr4_random C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=9807.000000 s hg19.chr4_gl000194_random 142427 44 + 191469 aacagaatagagaacccgaaaataa--acatgcacccacagccatc s equCab2.chr26 28482147 36 - 41866177 aacagcatag------ccagagcat--aca-actctcacggctcc- i equCab2.chr26 N 0 C 0 s rheMac2.chr2 267742 46 + 189746636 aacagaatagagaaccccaaaataaacacatgcacatacagccatc i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3494657 44 + 6711082 aacagaatagagaaccccaaaataa--acatgcacctacagccatc i panTro2.chr4_random C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=104770.000000 s hg19.chr4_gl000194_random 142471 203 + 191469 AGCTTTCCCaggataacacaaagagagccaagtggcacctgcacattacgctgtggaagaaaaacc-caagctcaagaaaccccaa-cttgtattatgggaagttcacttggctgtacccttcccaagagggagaaattatctgcattatactatacagtaaataaact----------tttcctttgttccagaaggaggtac------tggttttctat s panTro2.chr4_random 3494701 202 + 6711082 AGCTTtcccatgataacacaaagagagccaagtggcacctgcacattacactgtggaagaaaaacc-caagctcaagaaaccccaa-cttgtattatgggaagttcacttggctgtacccttcccaagagggagaaattatctgcattatactagacagtaaataaact----------tttc-tttgtttcagaaggaggtgc------tggttttctat i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 267788 209 + 189746636 AGCTTtcccagggtaacacgaagagagccaagcggcttgtgcacattacactgtgggagaaaaacc-caagctcaagaaaccccaa-tttgtattatgggaagttcacttggctgtacctttccccagagagagaaattatctacattatactagacagcaaataagcc----------tttcctttgttccagaaggaggaacattccaaggctttctat i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28482183 201 - 41866177 aactctcacagcagaacacaaagagggccaaatgatgc-tgcacactgcactgcaggagagctgccccaatctgagggaactcaagtcttttatcat-ggcagttcacttgccaggacttttccccagagggtgacattgtctatattag--tggacagtaaacaagcc----------tttccttcactccagaaggagacac------tatttctatat i equCab2.chr26 C 0 C 0 s canFam2.chr31 28124486 213 - 42263495 aactttcacagggcaacacaaag-gggtcaagcgatgcttgcccatggtactgtagaagtacagccacaagtttagggaacctccatcttttattat-gaatgttcatttgccaagacttttccccagagaaagacattctctaaattatactggacagtaaacaagcctaaacaagcttttcctttgctccagaaggagacac------taattctatat i canFam2.chr31 N 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=96741.000000 s hg19.chr4_gl000194_random 142674 169 + 191469 tccaaggctgttttctatacaaacatgcttgaaaacaatcatttg-gaacaagaaagtcagcgtccatacttgcaaaatgtgcggaaattaaagagacccaaaaattgtttctctacCA----ATTTCTATT-----TTTTT---AAAATCACATTT-TCC----CCATATAATAAGCTTTTAATAT s canFam2.chr31 28124699 155 - 42263495 tccaaggctgttttctatacagacattgttgaaa--aggtattca--aacaaggcagccagtg------cttgcaaattgtgcggaaatcag--acacccaAGA---GCACCCTCCTAA-------TCCAGT-----TTATT----AAATCAGCTCT-TTTTCTACAAAATTATACATCTTTAATAT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28482384 162 - 41866177 tccaaggctgttttctatacagacatttgtgaaa--aaatattcaagaacaaggaggccaatg------cttgcaaattgtccagaagtgaggaagacccaagaattgtgttccCCCAC-------CCTGTT-----TTATTA--AAAACTAGTTCT-TTT--TACATAATAATATGCCTTTAATAC i equCab2.chr26 C 0 C 0 s oryCun2.chr14 21968453 159 - 163896628 ----------TTCCCTAGGCAATCACCTCTGAAAACAAACATGAA-GCCCAAG---CCcagtgtctgtgcttgcaagatatgcagaaattcatgagactctagaattgtctccccacaA----ATTTCTGTT-----TATTTCAAAAAACAGGGTTCCCCT----CCACATAATATGCCTT-TAAAT i oryCun2.chr14 N 0 C 0 s cavPor3.scaffold_34 8601139 167 + 24440124 ttcaaagttgtttcctatgcaagcattcttgaaaacaaatattta-aaacata---ctcagtgtcagtgtttacaaaacatgcagaatttcaagtgaccc--aaattatcttccTATAAAACCACTTCCTTTAAAAATATTTTGCCAAATAACATTT-------------TAATATGCAGT-CATAC i cavPor3.scaffold_34 N 0 C 0 s panTro2.chr4_random 3494903 169 + 6711082 tccaaggctgttttctatacaaacatgcttgaaaacaatcatttg-gaacaagaaattcagcgtccatacttgcaaaatgtgcggaaattaaagagaccccaaaactgtttctctacCA----ATTTCTATT-----TTTTTT--AAAATCACATTT-TCC----CCATATAATATGCTTT-AATAT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 267997 169 + 189746636 tccaaggctgttttctatacaaacatgcttgaaaacaatcatttg-gaacaagatagtcagtgtccatacatgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCA----ATTTCTATT-----TTTTA---AAAATCATATTT-TCC----CCATTTAATATGCTTTTAATAT i rheMac2.chr2 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=143640.000000 s hg19.chr4_gl000194_random 142843 190 + 191469 ATGATAATATTCTGAA----------ATTGTCTTAGCATTTACCCCCATTTCTGAGTCCAGAAGGATACAATA-----AATTTAATTTAATTTAGTAACACTTCAAATAGTAGTGATTGTAATAGCAG--AGCTAG-------TTTGTAGCATAAAGA--AAA--AATAATA------A------TATTAG-GTGACAC----AAATAATGCTAGCCACCATTTCTAAGTGTCAT s rheMac2.chr2 268166 199 + 189746636 GTGATTATATCCTGAA----------ATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAaatttaatttaatttaatttaGTAACACTTCAAATTGTAGTGATTCTAATAGGAG--AGCTAG-------TTTGTAGCATAAAGA--AAA--AATAATA------T------TATTAG-GTGACACATATAAATAATGCTAGTCACCATTTGTAAGTGTCAT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495072 193 + 6711082 GTGATAATATTCTGAA----------ATTGTCTTAGCATTTACCTCCATTTTTGAGTCCAGAAGGATACAATA-----AATTTAATTTAATTTAGTGACACTTCAAATAGTAGTGATTGAAATAGCAG--AGCTAG-------TTCGTAGCATAAAGA--AAA--AATAATA------ATAT---TATTAG-GTGACAC----AACTAATGCTAGCCACCATTTCTAAGTGTCGT i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8601306 187 + 24440124 TCTAAAATATTAAGAATTACTAAAATATGGTATC------------------------TAAAAGAATATGATG-----AACAAAAATT--AACAGCACTATTTTAAACAGTAGTGATTCAAATAACTG--AGTTAT---TTGCTATGTAGTACAAAGA--TAA--AATAATGCTTATAATACTCGTATTAT--TAAGGT----AACATATACAGATAAT--TTCCTAGGTAACAT i cavPor3.scaffold_34 C 0 I 5 s oryCun2.chr14 21968612 192 - 163896628 CCTATTATATACAGAA----------ATGGTATCAACAATTA-------TTCCTAGCATAGAAAGATACTATG-----AATTTGATTTTAATTGGTACTACTTTAAATAACAGTGATTGTAATAACTG--AGTCAT---TAACTTTGCAGTATAAAGA--AAT--AATAAGg------gggccagtgttgtggtgcagc----aggttaggccaccaac--tattacagtggcac i oryCun2.chr14 C 0 I 211 s equCab2.chr26 28482546 202 - 41866177 ACTATCATATTCTGAA----------ATGGTCTTAAAAATTAGTCCAATTTCTAAGTCTACAAGGATACTATG-----GATTTAATTTTATTTAGTACTACTTTAAATAGTAATGATTATAATAACTATCAGTCAT---TAACTTTGTAGTATTAAGA--AAAATAATAATA------T------TGTGAG-ATGACACATACAAATAATGCCAGTCACAATTCCTAGTTGTAAT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28124854 200 - 42263495 GCTCTCATATTCTAAA----------ATGGTATTAAGAATTACTCTAATTTCTGAGTCTAGGAGGATACTATG-----AATTTAATTTTATTTAGTGCTACTTTAAATACAAATGATAGAAACAACTA--AGTTAT---TATCTTTATATTATGAAAA--AAACCCCAAATA------T------TGTGAG-ATGACATATAAAAATAATGCCAGTCATCATTCCTAGTTGCAGT i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41905286 177 + 62548349 ATTATAGTATTCTGAC----------ATAATATTTATAATGACTCTAATTTCTGAATCTAAAAGGATACTATA-----AATTTAATTTTAGTTAGTAATACTTTACACAGTAGTGATTATAAAAACTACAGGTTATCAATAACTTTATGGTAGCAAGATTAAATAAATAATA------T------TGTGAG-GTGACATGTACAA------------------------------ i loxAfr3.scaffold_13 N 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=12075.000000 s hg19.chr4_gl000194_random 143033 29 + 191469 GGTAAGTACAGTGATTA---------TTTTCTTTTTTT s rheMac2.chr2 268365 38 + 189746636 GGTAAGTACAGTGATTACTTTGTTTTTTTTTTTTTTTT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495265 29 + 6711082 GGTAAGTACAGTGATTA---------TTTTCTTTTTTT i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8601498 29 + 24440124 GATAATTCCTGTAATCA---------CTCTTAGTGTCA i cavPor3.scaffold_34 I 5 C 0 s equCab2.chr26 28482748 26 - 41866177 AGTGAGTGTAGTGTTTA---------TTTCCTGTT--- i equCab2.chr26 C 0 I 275 s canFam2.chr31 28125054 29 - 42263495 AGGGTGTGTAGTGTTTA---------TTTTCTGTTTTA i canFam2.chr31 C 0 I 202 e loxAfr3.scaffold_13 41905463 0 + 62548349 C e oryCun2.chr14 21968804 211 - 163896628 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=6282.000000 s hg19.chr4_gl000194_random 143062 51 + 191469 C-----TGACTCTTTTTTATTGTA-TTTTTAAtttttttcccataggttattggggt s rheMac2.chr2 268403 47 + 189746636 T-----GGACTCTTTTTTATTTTA--ttttatttttt---ccataggttattggggt i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495294 52 + 6711082 C-----TGACTCTTTTTTATTGTATTTTTTAttttttttcccataggttattggggt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8601527 32 + 24440124 CATGAGTGATTATTTCCTATTTTA-AAATTAAT------------------------ i cavPor3.scaffold_34 C 0 I 943 e loxAfr3.scaffold_13 41905463 0 + 62548349 C e oryCun2.chr14 21968804 211 - 163896628 I e canFam2.chr31 28125083 202 - 42263495 I e equCab2.chr26 28482774 275 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=15096.000000 s hg19.chr4_gl000194_random 143113 85 + 191469 ac-ggtggtatttggttccatgcataacttctttactggttat--ttgtgagatttgggtgcacctatcacctgaacagtgtacactg s panTro2.chr4_random 3495346 85 + 6711082 ac-ggtggtatttggttccatgaataacttctttactggttat--ttgtgagatttgggtgcacctatcacccgaacagtgtacactg i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 268450 86 + 189746636 acaggtggtatttggttacatgaataatttacttagtggtgat--ttgtgagattttggtgcacccatcacccaagcagtatacactg i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41905463 36 + 62548349 AC-GATGGCACTAA---------------TCTTTACTAGTTGTCATAATGAG------------------------------------ i loxAfr3.scaffold_13 C 0 C 0 e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21968804 211 - 163896628 I e canFam2.chr31 28125083 202 - 42263495 I e equCab2.chr26 28482774 275 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=5618.000000 s hg19.chr4_gl000194_random 143198 46 + 191469 caccttatttgttatcttttatccctc---------------gcccccctcccTATTAAAT s oryCun2.chr14 21969015 61 - 163896628 ctctttttttctctcccttcctctctctctctctctctctctgccaatctgccttttgaat i oryCun2.chr14 I 211 I 7 s panTro2.chr4_random 3495431 46 + 6711082 caccttatttgttatcttttatccctc---------------gtcccccacccTATTAAAT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 268536 46 + 189746636 caccctatttgtagtcttttatccctt---------------gcccctctcccTATAAAAT i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41905499 10 + 62548349 ----------------TTTTATGCTT----------------------------------- i loxAfr3.scaffold_13 C 0 C 0 e cavPor3.scaffold_34 8601559 943 + 24440124 I e canFam2.chr31 28125083 202 - 42263495 I e equCab2.chr26 28482774 275 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=5007.000000 s hg19.chr4_gl000194_random 143244 65 + 191469 AATAGACAA--AAAATAATG-----GGTTTAGAATAA----------------ATGAGTTCAAAT-----------------------------GA---ATTG--------------------TCAAACGTATGTG---------------GGAA s rheMac2.chr2 268582 65 + 189746636 AATAGACAA--AAAATAATG-----GGTTTAGAATAA----------------ATGAGCTCAAGT-----------------------------AA---ATTG--------------------TCAAATGTATGTG---------------GGAT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495477 65 + 6711082 AATAGACAA--AAAATAATG-----GGTTTAGAATAA----------------ATGAGTTCAAAT-----------------------------GA---ATTG--------------------TCAAACGTATGTG---------------GGAA i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21969083 150 - 163896628 AATGTAAAA--AAAGTAATAATAATGTTATAAAATGACATGACAATGGCAATCATCATTTCTAATTTTATAGTGATTGTTAATTTTCTATTATAAA---ATTGATAGACCATGAAGAATCACATAAAACAAATGTGTTTAAATAATAAATTTGGA i oryCun2.chr14 I 7 C 0 s canFam2.chr31 28125285 60 - 42263495 GATAAACTA--CAAAA--AG-----AGATTAGAATAA----------------ATG------AAT-----------------------------GATTCATTT--------------------TCAAATGTCAGCA---------------GGAA i canFam2.chr31 I 202 I 178 s equCab2.chr26 28483049 52 - 41866177 ----------------AAAG-----AGATTAGAATAA----------------ATGAATT-AAAT-----------------------------GATACGTTT--------------------TCAAATATAAGTG---------------GGT- i equCab2.chr26 I 275 C 0 s loxAfr3.scaffold_13 41905509 67 + 62548349 AATAGACAATGAAGAGAATG-----AAATTAGAATGA------------------GAGCT-AAAT-----------------------------GAAAAACTT--------------------TACAATACAGGTG---------------AGAT i loxAfr3.scaffold_13 C 0 C 0 e cavPor3.scaffold_34 8601559 943 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=111429.000000 s hg19.chr4_gl000194_random 143309 115 + 191469 -AAGTGGAATCAGTTTGTGAGA---AAAAGGAAAAAAACTCAACAGAAATGCTGATAAAGCATCATCCCTTCATGGCTAGAGCTGCCAGGACACTAGAACACCAAAATCAGCTAGGGAA s rheMac2.chr2 268647 114 + 189746636 -AAGTGGAATCAGTTTCTGAGA---AAAAGC-AAAAAACTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCAGAACACCAGGGTCAGCCAGGGAC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495542 115 + 6711082 -AAGTGGAATCAGTTTGTGAGA---AAAAGTAAAAAAACTCAACAGAAATGCTGATAAAGCATCATCCCTTCATGGCTAGAGCTGCCAGGACACTAGAACACCAAAATCAGCTAGGGAA i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21969233 108 - 163896628 -AAGTGAGATTGCTATCTGGGA---AA-----AAAAATCTCAACTGAAATTCCCAGGAAGTATCCTCTCTTAA--GATCAAACTAACATGACATTGCAACACTGAAACCAGCCTGGGGA i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28125523 113 - 42263495 -AAGTGAAATTGGTTTCTGAGGAAAAA-----AAAGATCTCAGTAGAAACACCCATGAAGTATCATCCCTTAATGGCAAGAACTTCCTGAACATCAGAACACCTAAAGTAGGTAGACGA i canFam2.chr31 I 178 C 0 s equCab2.chr26 28483101 110 - 41866177 -AAGTGAAATTGATTTCTGAGG---GA-----AAAGATCTGAAGAAAAATGCCCATGAAGCATCATCCCTTAATGGCAAGAACTGCCTGGACATCAGAACACTTACATTGGCCAGAGGA i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41905576 109 + 62548349 GAATAGAAATTGGATTCTGAGA----------AAAAATCTCAACAAAATTGCCCATGAAGCCTCATTTCTTCATGGTGAGAACTGCCAGGACATCAGATCACCTAAATCTGCCAGGGAA i loxAfr3.scaffold_13 C 0 I 2276 e cavPor3.scaffold_34 8601559 943 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=16556.000000 s hg19.chr4_gl000194_random 143424 36 + 191469 ATTTTGTAGAAGTCCCAGATGTACTAGATGTTCTG----T s rheMac2.chr2 268761 36 + 189746636 ATTTTGTAGAAGTCCTAGATGTACTCACTGCTCTG----T i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495657 36 + 6711082 ATTTTGTAGAAGTCCCAGATGTACTAAATGTTCTG----T i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21969341 34 - 163896628 TCTCTGTAGAGGTCCAGGGTGTACCAATTGTCCT------ i oryCun2.chr14 C 0 I 683 s canFam2.chr31 28125636 39 - 42263495 ACTCTAGAGAAGTGCTGGATGTACCAACTGTTATGGTAT- i canFam2.chr31 C 0 C 0 s equCab2.chr26 28483211 34 - 41866177 ACTCT-GTAAAGTCCTGGATGGACCAACTATTATG----- i equCab2.chr26 C 0 I 673 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=14844.000000 s hg19.chr4_gl000194_random 143460 21 + 191469 GAATACACAGAGATATAATTA s rheMac2.chr2 268797 21 + 189746636 GAATACACAGAGATATAATTA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495693 21 + 6711082 GAATACACAGAGATATAATTA i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21970058 21 - 163896628 GAATACACAGAGATATAATGG i oryCun2.chr14 I 683 C 0 s equCab2.chr26 28483918 21 - 41866177 gaatacccagagacatagcaa i equCab2.chr26 I 673 I 28 s canFam2.chr31 28125675 14 - 42263495 -------GAGGAACAAAGATA i canFam2.chr31 C 0 I 663 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=24652.000000 s hg19.chr4_gl000194_random 143481 57 + 191469 TAACTGTTACCTGCATGTAGAGTAAAGATGAGAA-----------GGCATTGGTCAT--------GGTGGCAGCTA s rheMac2.chr2 268818 54 + 189746636 TAACTG-TACCTGCATGTAAAG--ATGAGAAGAA-----------GGCATTGGTCAT--------AGTGGCAACTA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495714 57 + 6711082 TAACTGTTACCTGCATGTAGAGTAAAGATGAGAA-----------GGCATTGGTCAT--------GGTGGCAGCTA i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21970079 65 - 163896628 T-ACTA-TATGTGCATGTGCCATGGAGGTTATAAGCAGATTGTTGGGCACTAGTTAC--------AG-AGCAGATA i oryCun2.chr14 C 0 I 60 s equCab2.chr26 28483967 62 - 41866177 TAACTATTACCATTATGTATGGTAGAGGCAAGAACCAA-------GACATTGGTCACT-------GGTGTCAGCTA i equCab2.chr26 I 28 C 0 s canFam2.chr31 28126352 69 - 42263495 TGACTACTACCTTTACATATTGTAAATGCGAGAAGCAA-------GGCATTGGTCATTGGTCATCGGTGTCAGCTA i canFam2.chr31 I 663 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=17334.000000 s hg19.chr4_gl000194_random 143538 32 + 191469 CCTCAGGAGTTACAAAGCAGACGTGGTTCCAG s panTro2.chr4_random 3495771 32 + 6711082 CCTCAGGAGTTACAAAGCAGACATGGTTCCAG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 268872 32 + 189746636 CCTCAGGAGTTACAAAGCAGACGTGGTTCCAG i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28484029 32 - 41866177 GTTCACAAGTTACAGAGCAGCCATGCTGTGTG i equCab2.chr26 C 0 C 0 s canFam2.chr31 28126421 32 - 42263495 CGTTAGAAGTTACAGAGCAGTCATGCTGTGTG i canFam2.chr31 C 0 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970144 60 - 163896628 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=49145.000000 s hg19.chr4_gl000194_random 143570 83 + 191469 GACAGTGTATGTCAGGGCAAAGCTGTCCTAGTAGGCTATTAGGAGTTGGTTACGGCACAGAC---ATTGTAAGTCAGATGGTCTca s rheMac2.chr2 268904 83 + 189746636 GACAGTATATGTCAGGGCAGAGGTGCCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTca i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495803 83 + 6711082 GACAGTGTATGTCAGAGCAAAGCTGTCCTAGGAGGCTATTAGGAGTTGGTTACGGCACAGAC---ATTGTAAGTCAGATGGTCTca i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21970204 85 - 163896628 GACAGTGCATGCCAAGGAAGGGTTGTCTTTTCAGTTCCTTAGGAGTTGGTCATGGCCCAGGCT-GATTATAAGTTCAATAGTCTCA i oryCun2.chr14 I 60 I 901 s equCab2.chr26 28484061 68 - 41866177 GACGGCATACGTCAGGGTGATGTTGTACTCTGA--------------GGTCAT----TAGTCTAGATTATATGCTAGATGTTCTCA i equCab2.chr26 C 0 I 2445 s canFam2.chr31 28126453 81 - 42263495 GACACTATATGTCAGGGCAAGGTTGTGCTATGATATCATTAGAACCTGGTCAT----CTGGCTTGATTGTAAGTCAGATGGTCTC- i canFam2.chr31 C 0 I 5309 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=10387.000000 s hg19.chr4_gl000194_random 143653 43 + 191469 ttactttcaatgacaaaaccaaaattacttttgcatcagcc-AA s rheMac2.chr2 268987 44 + 189746636 tcactttcattgacaaaaccaaaattacttttgcatcagcctaa i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3495886 44 + 6711082 ttactttcaatgacaaaaccaaaattacttttgtatcagcctaa i panTro2.chr4_random C 0 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e canFam2.chr31 28126534 5309 - 42263495 I e equCab2.chr26 28484129 2445 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=98654.000000 s hg19.chr4_gl000194_random 143696 156 + 191469 TACAACGGCCTGGCAAGAGCACAGAAAAAGGCCCTGTGCTGT-TAGGTGGGGACCTCTGATGCAGCACAA-TTCCTTCATTCCCTTCTCCAAAA---------CCT-CCTCTTCCAATTCCACTGAA-GAGAGAATCTGATGGAAGTCCTGTGTAAGCAGGCTCAGATA s panTro2.chr4_random 3495930 157 + 6711082 TACAACGGCCTGGCAAGAGCACAGAAAAAGGCCCTGTGCTGT-TAGGTGGGGACCTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAAC--------CCC-CCTCTTCCAATTCCACTGAA-GAGAAAATCTGATGGAAGTGCTGTGTAAGTAGGCTCAGATA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 269031 154 + 189746636 TACAATGGCCTGGCAAGAGCACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-CTCCTTCATCCCCTTCTCCAAAA---------CCC-CCTCTTCCAATTCCACTGAA-GAGAAAATCTGATGGACGTCC--TGTAAGCAGGCTCAGATA i rheMac2.chr2 C 0 C 0 s pteVam1.scaffold_2436 58328 164 - 186104 TGCAACAGCCTGGTGAGAGCCAATGAAAAGCTTATGTGCTGTGTAAATGT-GCCTTCTAATGTAGCATAATTTTCTTCATCCCTT-CTTTATAACTTGTTGATATCATCCTTTCCAGGTCGATCAAA-GGGAGAACTCAGTGGAAGTCT--TATAAGTGGGCTAAAATA i pteVam1.scaffold_2436 N 0 N 0 s canFam2.chr31 28131843 164 - 42263495 -ACAACAGCCTGGCAGGAGTGAAAGAAAAACTTATGTGTTGTATAGATGTGGCCTTCTAATGTGGCATAATTTTTTTCATCCTTTCTTCTAAAACATGTTGAGACC-CCCTTTCTAGCTCCATCAAA-GCCAAAATCTAGTGGAAATCC--TGAAGGCAGGCTCAAAAG i canFam2.chr31 I 5309 I 34 s equCab2.chr26 28486574 149 - 41866177 -ACAACAGCCTGGCAAGAGGAAAACAAAAGTTCATGTGTTGTGTAGAAGTGGCCTTCTAACGTGGCATAATTTTCTTCATCGTT--CTCTAAAATGTGTTGAGACC-TTCTTTCCAGTGCCACCAAAGGGAAAAACCTAGTGGAAGACC--TGTG-------------- i equCab2.chr26 I 2445 I 277 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=-24.000000 s hg19.chr4_gl000194_random 143852 16 + 191469 TATCTACCA-CT----------------------------------ATAGA s panTro2.chr4_random 3496087 16 + 6711082 TATCTACCA-CT----------------------------------ATAGA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 269185 17 + 189746636 TATCTGCTATTT----------------------------------AAAGA i rheMac2.chr2 C 0 I 5 s canFam2.chr31 28132041 50 - 42263495 TATCATCCA-GTTAACAATCATATGGGTTTTATTTTAAAAGTCAAAATAGA i canFam2.chr31 I 34 I 102 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e equCab2.chr26 28486723 277 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=22721.000000 s hg19.chr4_gl000194_random 143868 88 + 191469 TAGTAGAGGTGATTCATAAATCCAAGCCTATCAAA----TACATCATAAAAAAGTTACA------------------------------------------CGTT------------------------------------------TAATTTTTTTTGAAATTAGGGATCATGAt s panTro2.chr4_random 3496103 88 + 6711082 TAGTAGAGGTGATTCATAAATCCAAGCCTATCAAA----TACATCATAAAAAAGTTACA------------------------------------------CGTT------------------------------------------TAATTTTTTTTGAAATTAGGGATCATGAt i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 269207 92 + 189746636 TGGTAGAGGTGATTCACAAATCCAAGCCTACCAAA----TACACCATAAATAGGTTACA------------------------------------------TGTTA--------------------------------------TTATTATTTTTTTTGAAATTAGGGGTCATGAt i rheMac2.chr2 I 5 C 0 s canFam2.chr31 28132193 176 - 42263495 TAGTAGAAGTGGTTTGCAGATCCATGCCTACCAAACATGCATATCCTAAATGAGTTAGATCCATCCTCTCTAGGCCTGAACTGCATTGTATTTCTGTCATTTGTTCTCCAGAATAAGGATAttttttgtttgctctgcttttgtttttttttttttttttAAATAGAGATTGTGAT i canFam2.chr31 I 102 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e equCab2.chr26 28486723 277 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=96646.000000 s hg19.chr4_gl000194_random 143956 406 + 191469 atgaaagttatcagaatcaaaactgtcagtaatctttaaaaagaaaagaaaaaacctggacaaatagattcagagaaggccttgaagagagggttctcatgcttctaggcctgatacaaactatcacaaaataccacaaaatccacaaccttgcacaaaggccatagcaaccttacacgaaatacacttctgtgaggacatctatccagcaaccacctgctcaaacttcaactgacatcgaccttgttgttgatctttatagtcaaagataactataacaaaacaattatagaagcctcttcatttttcctttatttatttttttctactcccccataattccaggttgatcgcttttcttttaaagaccttgtcttcctttaccatttgaatctacacagtttgc s rheMac2.chr2 269299 400 + 189746636 gtgaaagttatcagaatcaaaactgtcattaatgtttaaaaagaaaagaaaaaacccagacaaaaaaattcagagaaggccttgaagagagggttcttacgcttcttggcctgat---aacaaaaacaaaataccacgaaaactacaatcttgcacaaaggccgtagcaaccttacacaaaaaatacttctgtggggacatctatccagcaaccacctgcccaacctacaactgacatcgaccttgttgtcgatctttatagtcaaagataactgtgtcaaaacaattatacaagcctcttcatttttcctttat---ttttttcctactcccccatacttccaggttgatcatttttcttttaaaaaccttgtctcctttacctatttgaatctacatagtttac i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3496191 406 + 6711082 ataaaagttatcagaatcaaaactgtcagtaatctttaaaaagaaaagaaaaaacctggacaaatagattcagagaaggccttgaagagagggttctcatgcttctaggcctgatacaaactatcacaaaataccacaaaatccacaaccttgcacaaaggccatagcaaccttacacaaaatacacttctgtgaggacatctatccagcaaccacctgcccaaacttcaactgacatcgaccttgttgttgctctttatagtcaaagataactataacaaaacaattagataagcctcttcatttttcctttatttatttttttctactcacccataattccaggttgatcgcttttcttttaaagaccttgtcttcctttaccatttgaatctacacagtttgc i panTro2.chr4_random C 0 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e canFam2.chr31 28132369 0 - 42263495 C e equCab2.chr26 28486723 277 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=23632.000000 s hg19.chr4_gl000194_random 144362 93 + 191469 tttgtcatgcatattcccattgcagcgccctcctccctaagatgtgtctttttcctttagagaacctttctctgtttgttatttaggtttaca s panTro2.chr4_random 3496597 93 + 6711082 tttgtcatgcatattcccattgcagtgccctcctccctaagatgtgtctttttcctttagagaacctttctctgtttgttatttaggtttaca i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 269699 93 + 189746636 tctgtcatgcatattcccattgcaatgccctcctccctaagatatgtctttttcctttaaagagcctttctatgcttgttatttaggtttaca i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28487000 69 - 41866177 TTTGCCATTCCT-TTTCCAAGATAAGGGTCTCTTTT-----GTTTGTGTACTTTTTTTAAAAAA------------------TAGAGATCACG i equCab2.chr26 I 277 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e canFam2.chr31 28132369 0 - 42263495 C e ponAbe2.chr3 42363023 26895 + 202140232 I a score=103906.000000 s hg19.chr4_gl000194_random 144455 255 + 191469 ATGAGAAGGCGTGTAAAGTAATT-----------TTACTGTCT------TCCTAGGAAAAAATCACTGACttataatatttatatttatttatttaCATTCCTG---------GGGATGAG-GAATTAAAGATTTCACAAattttcttattgagaagatcgaagttttcatgtgagcaaaactgaatatgcaaattg-atatgtaaattatgctgcagataatatgctcaaatgtttacttgtatttaatttg------------------------------------------ttacacatgaatattgcatatgtaagataa s panTro2.chr4_random 3496690 255 + 6711082 ATGAGAAGGCGTGTAAAGTAATT-----------TTACTGTCT------TCCTAGGAAAAAATCACTGACTTACaatatttatatttatttatttaCATTCCTG---------GGGATGAG-GAATTAAAGATTTCACAAATTTTCTTATTGAGAAGATCGAAGTTTTCATGTGAGCAAAACTGAATATGTAAATTG-ATATGTGAATTATGCTGCAGATAATATGCTCAAATGTTTGCTTGTATTTAGTTTG------------------------------------------TTACACATGAATATTGCATATGTAAGATAA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 269792 266 + 189746636 ACGAGAAGGGGTCTAAAGTATTTTTGTAAAATTGTTACTGTCT------TCCCAGGAAAAAATCACTGACTTTTACTGTTTACATTGACTTATTTACATTCCTG---------GGGATGAG-GTATTAAATATTTCACAAATTTTCTTATTGACAAGATCCAAGTTTTCATGTGAGCAAAACTGAATATGCAAATTG-ATATGTAAATTATGCTGCAGATAAAATAGCCAAGTGTTTCCTTGTATTTAATTTG------------------------------------------TTCCAGGTGAATATTGCATGTGTAAGATAA i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28487069 255 - 41866177 ATAAGGGGTCTTAAATATTGTTT-----------TTATTTTCTCTTTCATCCTAGG-AAAAATCACTGACCCATAA---CTATATGTATCTACTTATGTCCCTGGGTTGGGTAGGGAAGA--GGGTTAGAGATTTCG-AAATTTTCTTGTTGAGAAGATCCAGGTTTTCATGTGAGCAAAACTGAATAAATACAttgaata--tacattatgctgtaggtaaaat--tcaagtatctacttataat--attta------------------------------------------ttaattatacgtat----tatgtaaggtaa i equCab2.chr26 C 0 I 2 s canFam2.chr31 28132369 283 - 42263495 --AAGAGATCTTCAAAGTCAATT-----------TTATTTTCTCTTTTTTCCTAGG-AAAAATCATTGACTCACAA---CTATATATATCTGCTTACATCTCTGTGTGGGGGAGGAGAGAGTGGGTTAGAAATCTC---AGTTTTCTCATTAAGAAAATTCAGGTTTTTATGTGAGCACAATTGAGTATATAAATTGAATAGGTAAGTTAGGCTGTGAATAAAAA--TAAAAtatctacttataat--atttatttatttatttatttatttatttatttatttatagattttatttatttattcat------------------ i canFam2.chr31 C 0 I 222 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=181479.000000 s hg19.chr4_gl000194_random 144710 452 + 191469 tat--actaagaaattatcacatttaatgaaatgctttaatcaaattactgat-tgaatttttg---atatcaatatctttt-tccttgtttaatccatctt--------------------------------------------------tagagt----gaacagggctgtctaggccaaagtcctcacttctatctaaattgtctgagttacagaactttttgaatt----tattatgttgtcacaggaagtttcttattgcctttttaaaggagttgctctcaatatgatgcggaatccaaaagcact-gaagggcatatatcctgagtttctgttactgaagccaaag--gttgccaatttcttgtagatcctgctagagttaaac--ttca-tttaagtaatcattaaaagctgcatttattccctcacttgaacttttgatttcacactattaggactaatcctctaagtctttgctaagt-tatgttcctcctttt--cttgtggcttgactctgat s panTro2.chr4_random 3496945 452 + 6711082 TAT--ACTAAGAAattatcacatttaatgaaatgctttaatcaaattcctgat-tgaatttttg---atatcaatatctttt-tccttgtttaatccatctt--------------------------------------------------tagagt----gaacagggctgtctaggccaaagtcctcacttctatctaaattgtctgagttacagaactttttgaatt----tattatgttgtcacaggaagtttCTTATTGCTTGTTTAAAGGAGTCGCTCTCAATATGATGCGGAATCCAAAAGCACT-GAAGGGCATATATCCTGAGTTTCTGTTACTGAAGCCAAAG--GTTGCCAATTTCTTGTAGATCCTGCCAGAGTTAAAC--TTCA-TTTaagtaatcattaaaagctgcatttattccctcacttgaacttttgatttcacactattaggactaatcctctaagtctttgctaagt-tatgttcctcctttt--cttgtgggttgactctgat i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 270058 454 + 189746636 TAC--ACTGAGAAattctcaagtttaatgaaatgctttaatcaaattcctcac-tgaatttttg---atagcggtgcctttc-tcgttgtttaatccatctt--------------------------------------------------tagagt----gaacagggctgtctaggccaaagtcctcacttctatctaaattgcctgagctacagaactttttgaatt----tattatgttgtcacaggaaatttCCTGTTGCTTGTTTAAAGGATTCTCTCTCAATATGATGCAGAATCCAAAAGCACT-GAAGGGCATATATGCTGAGTTTCTGGTACTGAAGCTAAAGCTGTTGCCGATTTCTTGGAGAGCCTGCCAGAGTTAAAC--TTCA-TTTAAGTAATCATTAAAAGCTGCATTTATTCCCTcacttgaaattttgatttcacactattaggactaatcctctaagtctttgctaagt-taagtttctgctttt--cttattgcttgactctgat i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28487326 448 - 41866177 tactgacttagaaattctgatatttcatgaaacaatttaatcaaactcttcacatgcattcttt---atatcaatgtcttttctatcagttaactccctt----------------------------------------------------tagagttatctaacaggattttctaggccatagtcttcctgtctatctaagttgtct-agttatagaaattttgccatctaagtataacgttgtcacagggaattGACTATTGCTTGTTTAAGGGTTTCTGTCTCAACATGATGCAGAATCAAAAGGAATTAAAAGGACATATATCCAGAGTTCCCTGCCCTGGAGTCACAGCTATTACCAATTTCTTATCTTTCCCACTGGAGTTAAACTGTTCATTTTAAGTAATCATTAAATGCCATGTTTAAttgc--------aattttgaaatcacatcattaggaataattgtt---gtctttgataaatttattttcctcccttt--tTTGCAGCTT--------- i equCab2.chr26 I 2 C 0 s canFam2.chr31 28132874 393 - 42263495 tac--acttagaaattctcacatttcatgaaataatttaatcaaactcttcacatgcattttttttaatatcaatgtctttt-taccaattaaatcccctttATACCAAAGGTTTAAATCTCTTGGATTTCATTGCCATGATATACAGCCACTAACGTTATCTAACAGGCTTTTCTAGGCCATAA--------------AAAGTATCTC-AGTTACAGAACTTTTGAAATCTATATATAATGTTGTCACAAGGAATTTCCTATTCTTTGTTTA------------------------------------------------------------------------------------------------------TCCCACTGGAATTAATACTTTCA-TTTAAGTAATCATTAAG-GTTGTGTTTAATCAC--------AATTTGGATGTCACACCATTAGAAATAATTATT---GTCCTAAATTAACACCCCCCCCCACCTTTTGTTTGTAGCTTGACTATGAT i canFam2.chr31 I 222 I 14 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=18697.000000 s hg19.chr4_gl000194_random 145162 77 + 191469 gctctctatatgcaacatcaattgatg-----taaagtacattcagggcaagagagtttctttaaatattactttgttattc s rheMac2.chr2 270512 82 + 189746636 gatctctatacgcaacatcaattgatgtaaattaaagtatattcagggcaagagagtttccttaaatattagtttgttattc i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3497397 77 + 6711082 gctctctatatgcaacatcaattgacg-----taaagtacattcagggcaagagagtttctttaaatattactttgttattc i panTro2.chr4_random C 0 C 0 e loxAfr3.scaffold_13 41905685 2276 + 62548349 I e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e canFam2.chr31 28133267 14 - 42263495 I e equCab2.chr26 28487774 0 - 41866177 C e ponAbe2.chr3 42363023 26895 + 202140232 I a score=32653.000000 s hg19.chr4_gl000194_random 145239 110 + 191469 aaaataatcacaaaagcactcatcgta-ggaaaacttgtgaggactcaaatatagggaaatactttttctttctaaggcacaattctctaaagaagttcaccttaatttga s panTro2.chr4_random 3497474 110 + 6711082 aaaataatcacaaaagcactcatcgta-ggaaaacttgtgaggactcaaatatagggaaatactttttctttctaaggcacaattctctaaagaagttcaccttaatttga i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 270594 110 + 189746636 atactaatcacaaaagcactcatcata-gaaaaacttgtgaggattcaaatataggaaaacactttttctttctaaggtataattctgtaaagaaattcaccttaatttga i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41907961 96 + 62548349 AAGGTAATCAT-GAATCATccttaatatgagagatttgtgaggacataaatatagagggaatttttttctttctgagagatacatttggaggaaaaa-------------- i loxAfr3.scaffold_13 I 2276 C 0 e cavPor3.scaffold_34 8601559 943 + 24440124 I e oryCun2.chr14 21970289 901 - 163896628 I e canFam2.chr31 28133267 14 - 42263495 I e equCab2.chr26 28487774 0 - 41866177 C e ponAbe2.chr3 42363023 26895 + 202140232 I a score=48228.000000 s hg19.chr4_gl000194_random 145349 104 + 191469 atatacatggGAAAATATCCTTGTTCACTAATAGTCTATAT-----TCACT--CTGTTTTCTTCCCTCATAGACCAGCCGGTTCACTATTATTTTCCAAATGATGTTTGCC s rheMac2.chr2 270704 104 + 189746636 atatatatggGAAAATCTCCTTGTTCACTAATATTCTATAT-----TCACT--CAGTTTTCTTCCCTCATAGACCAGCCAGCTCACTATTATTCTCCGAATGATGTGCGCC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3497584 104 + 6711082 atatacatggGAAAATATCGTTGTTCACTAATAGTCTATAT-----TCACT--CTGTTTTCTTCCCTCATAGACCAGCCGGTTCACTATTATTCTCCAAATGATGTGTGCC i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8602502 99 + 24440124 ATATTCATGG-----TCTCACGATTCACTAATATTCTATAT-----TCACC--TTGTTTGCCTTCCTCATAGTGCAACCAGTCCATTATTATTTTCAAAATCATGAGCACA i cavPor3.scaffold_34 I 943 C 0 s loxAfr3.scaffold_13 41908057 106 + 62548349 aaTCATATGA-----TTTCTTTATTTACCAATGAAGAATATAGAAATTATTTGTTATTTTCTTCCCCAATAGCCCAACTAGTCCACTATTATTCCTCTAATTATAAGTGAC i loxAfr3.scaffold_13 C 0 C 0 e oryCun2.chr14 21970289 901 - 163896628 I e canFam2.chr31 28133267 14 - 42263495 I e equCab2.chr26 28487774 0 - 41866177 C e ponAbe2.chr3 42363023 26895 + 202140232 I a score=98198.000000 s hg19.chr4_gl000194_random 145453 159 + 191469 TCTCTAGAGTCCAGGCTATCTGCATATCTACTTTTTCCCACA----AATTAC---TGTTTTGAATTGCACTGAATTCAATTCAAAGGGATGT-CATTTATAAACAGTGCAAATATATACTGCACGAGGGATCTTAGAAATCATACACATGGTTTGAtccataagctc s rheMac2.chr2 270808 163 + 189746636 TCTCCAGAGTTCAGGCTATCTGCATACCTAATTTTTCCCACAGATTAATTAC---TGTTCTGAATTGCAATGAATTCAATTCAAGGTGATGT-CATTTATAAAGAGTGCAAATATATACTGCACGAGGGATCTTAGAAATCACATACATGGTTCGATCCATAAGCTC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3497688 159 + 6711082 TCTCTAGAGTCCAGGCTATCTGCATATCTAATTTTTCCCACG----AATTAC---TGTTTTGAATTGCACTGAATTCAATTCAAGGGGATGT-CATTTATAAACAGTGCAAATATATACTGCATGAGGGATCTTAGAAATCATACACATGGTTTGATCCATAAGCTC i panTro2.chr4_random C 0 I 11041 s cavPor3.scaffold_34 8602601 158 + 24440124 TCCCCA-----TAATCTGTGTACGTATGTAACTTTCCCCCTCGGTTCATTAC-TTTGCTTTAAAC--CACTGGCTTTGATTCAAGGGCTTAT-AATATATACAGAATGCAAATGTGTACTACAAGAAGGTTCTTAGGAAGCACATTCACCACTCTATTCATAAATCC i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21971190 165 - 163896628 TCTCCAGAGTCTAGTCTACCTCCATCTACAACTTTTCCCATAGGTT-ATTCC-TGTGTTTGAAAATGCATTGGCTGTAATTCAAGGCACTGTAAATTTATATGGAATACAAATATATATTGCAAGGTGGTGCTTCATAATCATAACCATGGCTCAATCTATAAACTC i oryCun2.chr14 I 901 C 0 s loxAfr3.scaffold_13 41908163 163 + 62548349 TCTCCAGAAC-TAGCCTGTCTACATACTCCGTATTTTCAATAGGTTCATTGTCTTTGTCTCAAAATGCATTAGCTTCAATTCAAGAGGTTGT-AATTTATATAC-GTGCACACATGTATTGTACGAGGGTACTTAGGAATCATATGCACatctcaat-cgtaagctc i loxAfr3.scaffold_13 C 0 C 0 e canFam2.chr31 28133267 14 - 42263495 I e equCab2.chr26 28487774 0 - 41866177 C e ponAbe2.chr3 42363023 26895 + 202140232 I a score=136121.000000 s hg19.chr4_gl000194_random 145612 316 + 191469 atatgagcgtgcaatgtcaacttctttcatgt-ttttttaagtccacttaaattctattttaagccaccatctgcctgtgctgttagggcagttagccttca--atcattttaagatg---ctcctctctAAGTACCGTGATAATGATAGAGAtatcaccagtcaggtgtcctaggaag--ccgactccgagttggagatttgcatgcaaggaggttgaaat-gatattccc--------aacacctgtggaagagtgaaagcaatag--gattgggcggagcaggaagtcg-gctagaatgcaatcactatcatggctgcagtccactctacagg s oryCun2.chr14 21971355 281 - 163896628 AAGTCAATATTCAATGCTCATTTGGTTCATGTCCCCTTTAG--CCACTTGGTTTCTATTTTA-----------ACC--------AAGGAAAGTTAGCCTAGGTTAGTTTGTTTTGGCAAGTTTCCTTTTTGGGTTGTG-------CATAGGAACGTCACTGGTGAGCTGATCTTggaag--cagattctaaaatggaggtttgcacacaagaaggcttcataggatattccc--------agcactgtggt-ggagcaaaggcagcag--gatcgtgaagaggaagaaacag-gttgcagt-aaatcacaaggatggcaccaac------------ i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8602759 289 + 24440124 AGATGAACTT-------------------TGCACCTTTtaaatccatttaaattctattttaagacactctgcacctctcgtggtaggaatgttagtctcag--ggtgtttttaggcg---ctccctactgggttgtgttgtaattataggaattttacCTATCAGGTG-TCTCAAAAAATCACACTT----GTGGAG------ACTCAAGGAAGCTTAGTGGGATATTTTC--------AACATACTCATgggagtaaa--tagcatccaactgagtagaacaagaagttg-actgcagt-ctatcacaagaatgacctcagctcatcccacagg i cavPor3.scaffold_34 C 0 C 0 s panTro2.chr4_random 3508888 316 + 6711082 ATATGAGCGTGCAATGTCAACTTTTTTCATGT-TTTTTTAAATCCACTTAAATTCTATTTTAAGCCATCATCTGCCTGTGCTGTTAGGGCAGTTAGCCTTCA--ATCATTTTAAGATG---CTCCCCTCTAAGTACCGTGATAGTGATAGAGATATCACCAgtcaggtgtcctaggaag--ccgactccgagttggagatttgcatgcaaggaggttgaaat-gatattccc--------aacacctgtggaagagtgaaagcaatag--gattgggaggagcaggaagtcg-gctggaatacaatcactatcatggccgcagtccactctacagg i panTro2.chr4_random I 11041 C 0 s rheMac2.chr2 270971 317 + 189746636 ATGTGAGCATGCAATGTCAACTTTTTTCATGT-CTTTTTAAATCCACTTAAATTCTATTTTAAGCCACCATCTGTCTGTGCTGTTAGGGCAGTCAGCCTCAA--ATCATTTTAAGATG---CTCCCCCCTGAGTATTGCGATAGTGACAGAGATGTCACCAGTCATGTGTcctaggaag--ccagctccgagatggagattcgcatgcaaggaagttgaaatggatattccc--------aacacctgtggaagagtgccagcaatag--gattgggcagagcaggaagtgg-gctggaaggcaatcactatcatggccacagcccgctcttcagg i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41908326 311 + 62548349 aggtgagcatgccttgtcaattttcttcatgt-ctt-----------ctaacgtctactttaagccacccttccactgtactgacaggaaagttagcgtcag--attctttgaggg-----ctggctcctgggttgtgctgtagttataggggtgccacaggtcaggtttcccaagtaa--cagattctgaggtggaaattcatatgc-aggaagtttattggggtgtccccttgggattaatacctgtggagaagtgacggaaacag--gattgtgcagaagaagaagctgaactgcaatacagtcacaa-aatggcctcagctgatgctatggg i loxAfr3.scaffold_13 C 0 C 0 e canFam2.chr31 28133267 14 - 42263495 I e equCab2.chr26 28487774 0 - 41866177 C e ponAbe2.chr3 42363023 26895 + 202140232 I a score=459296.000000 s hg19.chr4_gl000194_random 145928 611 + 191469 gatcttggtgagtttacctaatgacctcgaattggagcaagaaaaccaggccattatatttctgtaccaagcagttctcggatgtgg-gatgccc-tgagaagggac-atgaa---cttg--------------------------------------------------------------------------------------------------------------------------------------------------gatgaaggaactttactgtgctgtgagtattgttgccaggagtcagctgtcaacactcccaggaga-cgggaaattatg----ctttagtcactgaggcggcatct-agtgtcagaccacagcCTTGttaaacagagccagactttggaggatggttggtgggtttaa----------aatttggggcttgacatcttgtccccacaagctgctgctggcctcttccttgtccatttctgtgtggcctgtttaggccccccagcttcctgcttcttctttaccatatttggaatgcaaaaatctacacgt--aatttggcccatggtcccttctgcttagacatatccttgtagctatttt------ttttttttaaagatgactatgtcttctagaatattt-ctaagaaa------ttgc-c--taagtcaccactgctcaccaagaggcc--tttgt-tttttcctcttcttaaccatgggaaaggaatgtaggagggtagggagtggatattttctaa--cctggaaaaaa-----c s rheMac2.chr2 271288 594 + 189746636 gaccctgatgagtttacctaatgacctcaaattggagcaaggaagccaagccattatatttctgtaccaagcagtcctcggatgtgg-gatgccc-tgagaagggac-atgaa---cttg--------------------------------------------------------------------------------------------------------------------------------------------------gatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcagcactcccaggaga-gggcgaatgatgcTTTCTTTAGTCACTGAGGAGGCATCT-AGTGCCAGATCACAGCCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAA----------CATTTGGGGCTTGACTTCTTGTCCTCACAAGCTGCTGCTGGCCTCTTCCTTGTCCACTTCTGTGAGGCCTGTTTAGGCCCACGAGCTTCCTGCTGCTTCTTTCCTGTATTTGGAATGCAAAAATATACTAGT--AATTTCTCCCATGGTCCCTTCTGCTTAGACATATCCTTGTAGCTATTTT--------------AAAGATGACGATTCCTTCTAGAATATTT-CT---AAA------CTGC-C--TAAGTCACCACTGCTCACCAAGAGGCC--TTTG----------CTTCTTAACCGT-GGAAAGGAACGTAGGAGTGTAGGGAGTAGATATTTTCTAA--CCTGGAAAAAT-----C i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3509204 610 + 6711082 gatcttggtgagtttacctaatgacctcgaattggagcaagaaaaccaggccattatatttctgtaccaagcagttctcggatgtgg-gatgcct-tgagaagggac-atgaa---cttg--------------------------------------------------------------------------------------------------------------------------------------------------gatgaaggaactttactgtgctgtgagtattgttgccaggagtcagctgtcaacactcccaggaga-cggggaattatg----ctttagtcACTGAGGCGGCATCT-AGTGTCAGACCACAGCCTTGTTAAACAGAGCCAGAATTTGGAGGATGGTTGGTGGGTTTAA----------CATTTGGGGCTTGACATCTTGTCCCCACAAGCTGTTACTGGCCTCTTCCTTGTCCATTTCTGTGTGGCCTGTTTAGGCACCCCAGCTTCCTGCTTCTTCTTTACCATATTTGGAATGCAAAAATCTACACGT--AATTTGGCCCATGGTCCCTTGTGCTTAGACATATCCTTGTAGCTATTTT------TTTTTTA-AAAGATGACTATGCCTTCTAGAATATTT-CTAAGAAA------TTGC-C--TAAGTCACCACTGCTCACCAAGAGGCC--TTTGT-TTTTTCCTCTTCTTAACCATGGGAAAGGAATGTAGGAGGGTAGGGAGTGGATATTTTGTAA--CCTGGAAAAAA-----C i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8603048 606 + 24440124 gattgtgatggtcctgtaaagctttctccta-tgggagccagtgaccaagccattatatttctatattggccagtccttgactgtaa-catgctcatgggaaaag---gtaaatatcttg--------------------------------------------------------------------------------------------------------------------------------------------------gatgaagGAATTTTACTGAGAAATATGCTTTACTGTCAG-------TTATCAACAGTCCCAGGAG--TGGAAAATGATG----CTTCAGTTACTAAGGATGCATCT-AGTGGCAGATCA---GCCTGttaaacagagtcagagcacagagaatgaatggtggatatggtggatatggcca-ttggtatttgaccacttatccacatcagctactatcagtcttacctttgtctatttctgcatagcatgtataggcccaccagctcactgatgctt-tttcctgtatagggaatacaaaa---ttctcat--gaatctacccatcgttccttctgcctgtacatactcttttagctttttt------tttc----tgaaatcttcattccttctgggagacttgctagggaaattgtgctgt-ttataatt--------ctcaccaagaggcc--tttctgttt-----tctcttaaccacgggaaaggaatacaagggtgaagggagtggggtcttcttcaactctgggaaaaacttttc i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21971636 531 - 163896628 -----------------aaaactacctcatgttgggagAAGGTGGCTACACC-TTGCATCTCTACACTGGCCAGCCCCTG--TGTAAGGATGTCCCTGAGTAGGT---GTGCA---CTGG--------------------------------------------------------------------------------------------------------------------------------------------------GATGAGGGGACCTTACTAAGGAATGGATATTATTGCCAGCAGTCATCTATTAGCACTCCCAAGAGC-TGGAGACTGATG----ATTTGCTCACTTAGGGGGCACCT-AGTAGCCGACCACAGCCTTGTTAAACAAAGCCAGGATGTGGAAGAAGGACA-----------GGAGACGGTCATTTAGTGCTTGACCACCAGTACACACACACT-------------CTTCTGCTTATTTCT-----------------------GGtcactgatgcctgtttaccatattcaatatgcaaaaattttctcat--gactctgcccatggccccttctgtctagacacacactgacacctatttg------tttc----tgggatctttgtgccttctagtatattt-ctaggaaa------ctat-ggataagt------------------------tttct-ctt-----tctcttaaccaggacaaatgtatgtaa-ggtagtaggagtggatgtttttctagtacaggaaaaatattttc i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28487774 611 - 41866177 GACTCTgatgggtctataaaactgtcctgcattggggtgaaagagccaggcctttataggccctcactgaccagtctttggatatgg-cccgtccctgagaaggggctatgag---tttg--------------------------------------------------------------------------------------------------------------------------------------------------gatgagatgattttattcagctgtgagcattattacaacacatcaactatcaatactcccaggagctgggagaatgatg----cttcggtcctgacgaaggcatctgggtggcagagtacagtgtTTGTAAGcagagccagaacatgggtgatggatgatgg-ttagg----------cgtttagtgcctgaccatctgcccacacaagctgctactggcctctcctttgtccatttctgcatggctcgtttaggcccacaagctcactgctgcttctttaccatatttggagtaaaaaaatcctctcatgagagtctttccattgacccttccacctagac--acacctgtagctctctta-----tttc----tggggcctttacatgtcctgggatattt-ccagggaa------ctgc-tcccaggtatccactgcttatcaaggggcc--cctgt-tttcccctcctctcaaccatggggagagaatgtagaggtggggagagtggattttt---aaaaacggggataat------ i equCab2.chr26 C 0 I 5 s canFam2.chr31 28133281 584 - 42263495 -------------------------CCTAAATTGGTGTAAAGGAGCCAGAACTTTATGTAACTACATTGTCCAGCCTTTGGATATG-----GTCTCTTAGAA--GTTTATGAA---CTTG--------------------------------------------------------------------------------------------------------------------------------------------------GATGAGATATTCATATTCAGCTGTGA-CATTACTGCAAGGAGTCAGCTGTCAGCAGCCCTAGAAGCTGGGAGAATGCTG----CTTTAGTCCTGATGAAGGCCTCTGGGTGGTAGAGCACAGCCTTGGTAAGCAGAGCCAGAGTGTGGGAGATGGATGGTAG-TTAGG----------TCCTTAG---CTGACCACCTGTCCACACAAGCCATTGTTGGTCTCTCCTTTGTCCATTCCCACATGGCTCAATGAGGCCCACAAGCCCACTGTTGGTTCTTTCTCATATTGGGAGCATAAAAATCCTCTCAT--GAGTCTCCTGATGGCCGCTTCTGCCTAAAC--ACCATTGTAGTTTTTTTATTTTTTTTC----TGGGACATTTAGATCTCATGGGATATTT-CTAGGAAA------TTGCTTTCTAGGTCTCCACTGCTGATCAAGGAACC-TTCTGT-TTTCCCCTCCTCTCAACCACAGAGATGGAATGTAGAGGTGTGGAGAGTAGATTTTTTCCTAATCTGGGGAAAAT------ i canFam2.chr31 I 14 I 846 s loxAfr3.scaffold_13 41908637 730 + 62548349 ggtcaccatgagtctacagaactgccccaagttggtgcaagggagccaagattttata-ccccgttttgaccagtctttggaggtgg-gctgtctctggaaggggtt-gtgat---cttgAATTCAGTTGCCATTGAGTAGCGCTCCATAGAGTTTTCAATGGCTGGCTTTCTGAAGGTGGATCACCAAGAACTTTCTTTCTAGGCACGTCTGAATGGACTCAAACCATCAACCTGTTAGCTACTTAGCGTGTTAACTATTTGCACAATTAAGTGACTTTATTCAGCTGTAAGCATTATTTTCAAGACTCACC--CTGGTCCAcccagaagcttggggaatcatg----cttcagccctgaaggaggcatctgggtggcagatcgtagtct----------accaagggtattgggggtgagta--------gg----------catttgacgcatggccatctgttcacacagtctgctgcttgcctctcctttgtcca-ttatgcatggcccatttaggcccaggagcgcactgctgctc-tttacagtctttggaatgcaagaatcttgtcaa--gagcacgctcacagccccttctgcctagacagacccc-acagacactt-------cttc----tgaaatcttaacacctctggggatattt-gtagaaaa------ctag-gcctagatccccactgccaaccgagaggccactctgt-tttcccctcctttcaaccatgggaaggggatgttggagtgagg------gatttttctctaatctggggaaatt------ i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=204675.000000 s hg19.chr4_gl000194_random 146539 268 + 191469 -----tcattttac-cctat--ataattttt---tttagcaaat--------tccttctttgcacttactccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaa-gatagcaggttattaggttt-tccaccaaaccttttctttctattcctttacatcagtgagcttagaataactctgctcctggaactgggaaaggg-act-tgggaaaagaaag----aaaaaaaaa-gctcccaaagtttagcatcacaaaa-cattatagtcacTG s rheMac2.chr2 271882 268 + 189746636 -----TCATTTTAC-CCTGT--ATAATTTTT---CTTAGCAAAT--------TCCTTCTTTGCACTTATTCCACAATCTTTCCAAATTCTCCCAAATGCTCAAGCTTTTAAAAAACAAAAGACAGAAATAATAGCAGGTTGTTATTTTT-TCCACTAAATCTTTTCTTTCTATTCCTTTACATCAATGAGCTTAGAATAACTCTGCTCCTGGAATTGGGAAAGGG-ACT-TGGGAAAAGAAAG----AAAAAAAAA--CTCTCAAAGTTTAACATCACAAAA-CATTACAGTCACTG i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3509814 269 + 6711082 -----TCATTTTAC-CCTAT--ATAATTTTT---GTTAGCAAAT--------TCCTTCTTTGCACTTACTCCACAATCTTTCCAAATTCTCCCAAATGCTCAAGCTTTTAAAAAATAAAAGACAGAAA-GATAGCAGGTTATTAGGTTT-TCCACCAAACCTTTTCTTTCTATTCCTTTACATCAGTGAGCTTAGAATAACTCTGCTCCTGGAACTGGGAAAGGG-ACT-TGGGAAAAGAAAG----AAAAAAAAAAGCTCCCAAAGTTTAACATCACAAAA-CATTATAGTCACTG i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8603654 254 + 24440124 -----tcctgtcatatttat--atagatt-----------------------ttatcctttccatctgttccccaatccttct-aattctcccaaagattcacaattttagaaaaataaagccagaaagaatttcaggttactATAACT-TTAATTGAG-CTTTCCCTTTGTATGCTTGAAATCAGTGAGTATAGTATAACTTTGCTTCAGTAACTAGGAAAAAAAACCTTGAGAAAATACTG-------AACACA-TTTTTTAAA--CTAAGATTATGAAATTACTGTGGTTACTG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21972167 279 - 163896628 -----tccttctacatttac--atatttttt---c--aataagc-taatgccttctgttttccacctatgttatgagctttttaaattttcctgaaggcttcaacttttagaaaacaaaagccagaaagaattggaggttattattcttctccattaaa-ccctcctgtctattcttttaaatcaatgagcccagaacaactttgcttctggaactgggaaagagtaca-tggggaaataatggaagaaaaaaaaa-actttaaaa--ttaacattgcaaaaacattatGGTTGTTT i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28488390 268 - 41866177 -----tcctttcacatttat--agtctctca---ttaagcaaaa--------tatttctctccaccagttctataaaccttctaaattattccaaaggcttaagcttatagaagacaacagtcagaaagaattgcaagttactattcctttccatgaattgcttcctttttattcctctacatcagtgagcccagaataactttgctcttagaagtggggaagaagacc-caggaag-----g----aaaaaaagg-gaccctaaaaattaatatcacaaaaacattatggtcacTG i equCab2.chr26 I 5 C 0 s loxAfr3.scaffold_13 41909367 292 + 62548349 ctttctcctttcacatgtagcaacaaccttcacacttagaaagaacacctttaccttctttccacccactccactgtccttctaagttttcccaaaggctc-agcttttaggcaacaaaagccagaaagaatcaca-gctattgttcctttctgtccaa-ctctcctttctatctctctacatcagtgagcccagaacagctttgctcctaccactgcaggaaaggatt-tggaaaaacactggaagaaaaaaaaa-aaacctaaaaattaacattacaaaaatactacagtcacTG i loxAfr3.scaffold_13 C 0 I 480 e canFam2.chr31 28133865 846 - 42263495 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=-3372.000000 s hg19.chr4_gl000194_random 146807 17 + 191469 ----------CTATTTTAttatt-----tatt s rheMac2.chr2 272150 27 + 189746636 Ttttatttatttatttatttatt-----tatt i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510083 17 + 6711082 ----------CTAttttattatt-----tatt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8603908 22 + 24440124 ----------TATTTGTAGTATTGAAAATATC i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21972446 9 - 163896628 ----------CTTTTTTGT------------- i oryCun2.chr14 C 0 I 1493 s equCab2.chr26 28488658 17 - 41866177 ----------TATTTGTACTAGA-----GAGT i equCab2.chr26 C 0 I 331 e loxAfr3.scaffold_13 41909659 480 + 62548349 I e canFam2.chr31 28133865 846 - 42263495 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=2556.000000 s hg19.chr4_gl000194_random 146824 28 + 191469 tatttatttattta----------cttttgagatggag s rheMac2.chr2 272177 28 + 189746636 tatttatttattta----------tttatgaaatggag i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510100 20 + 6711082 tattta------------------cttttgatttggag i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8603930 38 + 24440124 GACACAATTATTAAAAGATTAGAGTTTTAGAGATGTAA i cavPor3.scaffold_34 C 0 I 254 e loxAfr3.scaffold_13 41909659 480 + 62548349 I e oryCun2.chr14 21972455 1493 - 163896628 I e canFam2.chr31 28133865 846 - 42263495 I e equCab2.chr26 28488675 331 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=57562.000000 s hg19.chr4_gl000194_random 146852 223 + 191469 tcttgttctgccaccaggctggagtgcagtggtgcgatctctgctcactgcaacctccgcgtcctgggttcaagtgattctcctgcctcagcctactgagtagctgggactacaggcgtgtgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccgtgttagccaggatgatctcgatctcctgaatctgtgatccgcccgccttg s panTro2.chr4_random 3510120 223 + 6711082 tcttgttctgccaccaggctggagtgcagtggtgcgatctcggctcactgcaacctccgcgtcctgggttcaagtgattctcctgcctcagcctaccgagtagctgggactacaggcgtgggccaccacacccagctaattcttgtatttttagtagagatggggtttcaccgtgttagccaggatgatctcgatctcctgaatctgtgatccgcccgccttg i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 272205 223 + 189746636 tcttgttctgacgccaggctggagtgcagtggtgggatctcggctcactgcaacctccgcgtcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcatgtgccaccacactcagctaatttttgtatttttagtagagatggggttttaccatgtcagccaggatggtcttgatctcctgacctcgtgatccgcccaccttg i rheMac2.chr2 C 0 C 0 e loxAfr3.scaffold_13 41909659 480 + 62548349 I e cavPor3.scaffold_34 8603968 254 + 24440124 I e oryCun2.chr14 21972455 1493 - 163896628 I e canFam2.chr31 28133865 846 - 42263495 I e equCab2.chr26 28488675 331 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=10188.000000 s hg19.chr4_gl000194_random 147075 33 + 191469 gcctcccaaagtgctgggattacaggc---atgagc s rheMac2.chr2 272428 33 + 189746636 gcctcccaaagtgctgggattacaggc---ctgagc i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510343 33 + 6711082 gcctcccaaagtgctgggattacaggc---atgagc i panTro2.chr4_random C 0 C 0 s loxAfr3.scaffold_13 41910139 32 + 62548349 GCACTACAGATTGGTGGGA----AGGCACAATGGGC i loxAfr3.scaffold_13 I 480 C 0 e cavPor3.scaffold_34 8603968 254 + 24440124 I e oryCun2.chr14 21972455 1493 - 163896628 I e canFam2.chr31 28133865 846 - 42263495 I e equCab2.chr26 28488675 331 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=32920.000000 s hg19.chr4_gl000194_random 147108 70 + 191469 ------------------------------------------------------------------caccgtgAGTGACCCTGCTTTGTAA----GTTTT-----ACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAA s panTro2.chr4_random 3510376 70 + 6711082 ------------------------------------------------------------------caccgtgAGTGACCCTGCTTTGTAA----TTTTT-----ACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 272461 70 + 189746636 ------------------------------------------------------------------caccgcgcttggccTTGCTTTGTAA----TTTTT-----ACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAA i rheMac2.chr2 C 0 C 0 s canFam2.chr31 28134711 62 - 42263495 ---------------------------------------------------------------------------TGATTTTTCTTTGCAA----TTGTTC----ACATCACCTATCTCCTGTATTAGACCAAGAGCCCTTCGAA i canFam2.chr31 I 846 C 0 s equCab2.chr26 28489006 75 - 41866177 ------------------------------------------------------------------cagcatttgcaatttttctttgtaattgcttgttt----atatcatctgtctcctgcattacaccaagagctcctcaaa i equCab2.chr26 I 331 C 0 s cavPor3.scaffold_34 8604222 50 + 24440124 ------------------------------------------------------------------------------TTTTGCTTTGTAA----TTGTTTG-TAGCATCAT------------TTGTGCCTGCAGGTCTTTAAA i cavPor3.scaffold_34 I 254 C 0 s loxAfr3.scaffold_13 41910171 141 + 62548349 CCGTGTGTACCTTGCTTACTGGGTGATCAGGCCATGTTTCAAGGTATAGTATGTATTCTTGTACTACGAtaccagcaatttcgctttgtga----ttgtttgtttacatcatctgtctcctgctttagatttagagctcttaaaa i loxAfr3.scaffold_13 C 0 C 0 e oryCun2.chr14 21972455 1493 - 163896628 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=165027.000000 s hg19.chr4_gl000194_random 147178 124 + 191469 GCCAGAA-GACATACACCAGTTATCGTTCAATTAGAGATGTTCACTGATAAAACTGATTCTTCCATCTGAGGG-TGGTAATTGTAGTTAC--AGTAATGTAGATGACAATCTAAGTTAT---GTTCTATAA s rheMac2.chr2 272531 124 + 189746636 GCCAGAA-GACACACACTATGTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGG-TGGCATTTGTAGTTAC--AGTAATGTAGATGACAATCTAAGTTAT---GTTCTATAA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510446 124 + 6711082 GCCAGAA-GACATACACCATTTATAGTTCAATTAGAGATGTTCACTGATAAAACTGATTCTTCCATCTGAGGG-TGGTATTTGTAGTTAC--AGTAATGTAGATGACAATCTAAGTTAT---GTTCTATAA i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8604272 127 + 24440124 GCTACAGTGGTATGCACTATTTTCCATCCCATTAGAGGTGTTTGCTGAT-GGACCGATTCTTTAACTTGGGAGATGATGATTATAGTTGT--AGTAATATGGATATAAATTTAGATCAACA-ATTTTATGA i cavPor3.scaffold_34 C 0 C 0 s bosTau4.chr1 22902570 121 + 161106243 GCCAGGA-GATAGGTACCATTCACCATTCCATTAGTGATGTTTACTGAT-TAACTGATTTTTTAATCTGGAGG-TGATATTTACAGTTAC--AGTAAAATAGATAATA-----AGTTATTAAATTATATGA i bosTau4.chr1 N 0 C 0 s equCab2.chr26 28489081 116 - 41866177 gccagaa-tacatgcactattcatctttttatTAAAGATGTTTACTGAT---------CCTTCAATCTGAGAG-TGACATT--CAGTTAG--AGTAACAAAGATGACAATTTAAGTTATTAAGTTGTATGA i equCab2.chr26 C 0 I 118 s canFam2.chr31 28134773 118 - 42263495 GTCAGAA-GTTATAAACTATTCATCTTTCCATTAGTGATGTTTACTGAT-TAACTGACTCTTCAATCTGGGAG-TGACATTCACAGTTCC--AGTAGTATAGATG--------AATTATTAAGTTCTATGA i canFam2.chr31 C 0 C 0 s oryCun2.chr14 21973948 98 - 163896628 ------------------------CATTCAAATATAG-----TACCGAT-GAACTGATTTTTCACTCTGAGAG-TGAC--TCGCAGTCATTAAGAAATATAGGTGAAGACCTAAAGTGTCACATTCTTTGA i oryCun2.chr14 I 1493 C 0 s loxAfr3.scaffold_13 41910312 126 + 62548349 gctagaa-ggtatgtcctctttatctttCCATTAGGAATGTTTACTGGT-GAACTGCTTCTTCAATCTGGTAG-TGATATTCATAGTTAC--GGTAATATAGGTGACAACATAAGTTATTAAATTCTATGA i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=47435.000000 s hg19.chr4_gl000194_random 147302 101 + 191469 ACTGTGTCA-CTGACATC--------TCAATCTACA----------------------------------------------GCT-----------------------------------------------AAC------TTTGA----------------------------------TTTTTTAAAAGC-AGAGGAGT-GGGTTGTATAGGTTTAGAAATACATCCATCAAG------CTAGTTA---AGT s rheMac2.chr2 272655 101 + 189746636 ACTGTGTCA-CTGACATC--------TCAATCTACA----------------------------------------------GCT-----------------------------------------------AAC------TTTAA----------------------------------TTTTTTAAAAGC-AGAGGAGT-GGGTTGTATAGGTTTAGAAATACATCCATTAAG------CTCATTA---AGT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510570 101 + 6711082 ACTGTGTCA-CTGACATC--------TCAATCTACA----------------------------------------------GCT-----------------------------------------------AAC------TTTAA----------------------------------TTTTTTAAAAGC-AGAATAGT-GGGTTGTATAGGTTTAGAAATACATCCATCAAG------CTAGTTA---AGT i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8604399 100 + 24440124 AATG----T-TTCACAGA--------C--ATCTGCA----------------------------------------------GCT-----------------------------------------------AAC------TTTAA----------------------------------ATTTTT--AAGC-AGAGAAGT-GAGTTGAATATGTTTAGAAAT--ATTTATTATGCTTATGCTAATCAAATAAT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21974046 92 - 163896628 AGTGTGCCT-GTCACATC--------TCAATCTATA----------------------------------------------GCT-----------------------------------------------AAC------TTTAT----------------------------------TTTTTTTAAAGC-AAGCAAGTGGGGTTGTATATGTTTAGAAA-------------------CTGGTTAAATAAT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22902691 103 + 161106243 TGTGTGCCA-CTGATACA--------TGATCTAGAA-----------------------------------------------TG-----------------------------------------------AAA------TTTATTTATTT----------------------------GTTTTTAAAT---AGAAGAGT-GGTTTACCAATG-TTAGAAATATATCcattcag------tcagttc---agt i bosTau4.chr1 C 0 I 1277 s canFam2.chr31 28134891 101 - 42263495 TGTGCACCA-CATATACC--------TCAATTTGTA----------------------------------------------GTG-----------------------------------------------AAA------CTTAAC---------------------------------TTTTTTAAAAGC-AGAGAAGT-GGGTTGTATATA-TTGGAAATTTATATATTAAG------TTAGTTA---AAT i canFam2.chr31 C 0 I 3 s equCab2.chr26 28489315 233 - 41866177 tctgagctagcatctgccaatctttttcattttgtatgtgggacactgccacagcatggcctgatgagacctgtgtaggtctgtgcctaggatccaaacccatgaaccctgggccgctgaagaggaatgcacaaa------cttaaccacatggccactgggctggcccccAGAATTTAGCTTTTTAAAAGCGAGAGAAGT-GGGTTGTATATG-TTAAAAATATATCCATTA----------AGTTA---AAT i equCab2.chr26 I 118 I 3 s loxAfr3.scaffold_13 41910438 104 + 62548349 GCTATGTCA-GTACCATC--------TCAAACTACA----------------------------------------------GCT-----------------------------------------------AACTAATTTTTTTT----------------------------------TTTTTTAGAAAC-AGA--AAT-GGGTTGTATACA-TTAGAAATATGTTCAGTAAA------ATAGTTA---AAT i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=69986.000000 s hg19.chr4_gl000194_random 147403 115 + 191469 ----GAGATGGATTCAAGCCTTCAACTCACTGGAATATTTACC-AAATT--GACTATTCATT-AGCTAAAGGAGCCATATAAACAAGGT---ACTTTTTA-----AAATTCAAAATTATGTAAG---GTTTTAT- s rheMac2.chr2 272756 115 + 189746636 ----GAGGTAAATTCAAACCTTCACCTCATTGGAATATTTAAC-AAACT--GACTATTCATT-ATCTAAAGGAGCCATACCAACGAGGT---ACTTTTTA-----AAATTCAAAACTATGTAAG---GTTTTAT- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510671 115 + 6711082 ----GAGATGGATTCAAACCTTCAACTCACTGGAATATTTACC-AAATT--GACTATTCATT-AGCTAAAGGAGCCATATAAACAAGGT---ACTTTTTA-----AAATTCAAAATTATGTGAG---TTTTTAT- i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8604499 116 + 24440124 ----GAGACGGATTAAATCATTCCACTCCCTAAAATAACTACCTGAACT--GAACCTTTATT--GTCAAAAGTAACATATAAAGAAGGT---ATTTTT-------AAATCCAAAACCATATTAAAGTGTTTTCT- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21974138 95 - 163896628 ----GAGATAGACCAAACCTTTCAGTTCCCTGAACTATCTGCCTAAAGC--AAAGCATTATTTATCCAAAGGTAGCATATACAAA-------------------------------CGCATTAAA--GTTTTAT- i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28489551 120 - 41866177 ----GAGATGGCTTTAAACTTTCAGCTCCCAGGAACATCTACC-TAATCAGAACTATTCGTT-ATCCAATGGTGCAATATAAGCAATACATATATTTTT------AAATCCCAAGTTACATTAAG--GTTTTAT- i equCab2.chr26 I 3 C 0 s canFam2.chr31 28134995 122 - 42263495 ----GAGATGGGTTTACA-TTCCAGCTCCCTGGAACACCTATC-TAATCAGAACAATTCATT-ATCTAAAATTGCCATATAAGCAAGAT---TTTTTTTAAAAAGAAATCACAAATGACATTGAG--GTTTTAT- i canFam2.chr31 I 3 C 0 s loxAfr3.scaffold_13 41910542 108 + 62548349 AATGAGGATGGATTTAAACC----------------ACATACC-TAATCAGAAATATTCATT-ACTCAAAAATGGCACATAGACAAGGT---ATTTAAA------AAATCCAGAGCTACATGAAGGTGCTTTCTT i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22902794 1277 + 161106243 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=802717.000000 s hg19.chr4_gl000194_random 147518 736 + 191469 TTCCTTTTTATGTTGTTAT---------GAATTGGATTGTAGAGGTTATAAGGTAAAATAAGATT-A-CTTTTAC-AGTAAAACATACAACACATTGTCGCAAGAGGGCAGCCTTTGAACACGAATTGCTTCTCA-------GGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTAACACAACAAAAT---AATAAAACACTACAGAGGATCTAAGAAGATACTTTGACTTATGCATATTGTTACTTTTTTATTACTGCTAGTGGAAGATG----TAATCGACAAGGAAGGTAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATTTCTTTGGGTTTTA-GCTTTCAAACATCAAGAT---AGTAGGTCAAT--GTCTAAA-TGAGTGTATCAAAGTTCTCACAATGGCACATGTA-AATCCACCTCTTGTCTACCCAAAACTCTAACCAAGCAAAGGCAAGTTGGAAGAAT-CAGACAAATGTAAGTC--------CCTAGGATACA----TAAATGCCAC-------------------GGGATTTTATGTTTTTAACTTTCAACCTCCTAAGTTTCACTAAGAGACA-TGTTATTTGGAGAGGTTGCTAAAGTGTAT-TTGTATGATGTC--TCTGTTT-ACGGTTGGTCTGGACCTC--------------------------------------------------TTTCTGTCCAGTGGTTG--CCCTCA----ACTGATGAG---AGTCACCTCTC-TAAAGATCATGCTTACGTCCCTGGAGCAG--TCCGCAGCACTATCAATGTCTG---------ACGTCCACCTTTTTCCAATTAATATTTCTGTACTTACTGAATTGGAAA s rheMac2.chr2 272871 736 + 189746636 TTCCTTTTTATACTGTTAT---------GAATTGGATTGTAGAGGTTATAAGGTAAAATAAGATT-A-CTTTTAC-AGTAAAATATACAACACATTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCGCA-------GGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAATTAAAT---AATAAAACACTACTGAGGATCTAAGCAGCTAGTTTGACTTATGCATCTTGTTACTTTTTTATTACTGCTAATGGAAAACA----TAATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTGGGTTGTA-GCTTTCAAACATCAAGAT---AGTAGGTCAAT--GTCTAAA-TGAGTGTATCAAAGTTCTCACACTAGCACATGTA-AATCCACCTCTTATCTACCCAGAATTCTAACCAAGCAAAGGCAACTTGGAAGAAC-CAGACAAATGTAAGAG--------CCTAGGATACATACGTAAATGCCAC-------------------TGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACGAAGAGACA-TATTATTTGGAGACGTTGGTAAAGTGTAA-TTGTATGATGTC--TCGACGT-ACGGTTGGTCTGGACCCC--------------------------------------------------TCTCTGTCCAGTGGTTG--CCCTCA----ACTGATTAG---AGCCACCTCTC-TAAAGATCATGCTTATGTCCATGGAGCAG--TCCACAGCATTATAAA----TG---------ACCTCCACCTTGCTCCAACTGAGATTTCTAGACTTACTGAATTGGAAA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3510786 736 + 6711082 TTCCTTTTTATGTTGTTAT---------GAATTGGATTGTAGAGGTTATAAGGTAAAATAAGATG-A-CTTTTAC-AGTAAAACATACAACACATTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTCA-------GGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTAACGCAACAAAAT---AATAAAACACTGCAGAGGATCTAAGAAGATACTTTGACTTATGCATATTGTTACTTTTTTATTACTGCTAGTGGAAGATG----TAATCGACAAGGAAGGTAAGGGCTGAATTTGTTTTATGTAAATAGACAAATTTCTTTGGGTTTTA-GCTTTCAAACATCAAGAT---AGTAGGTCAAT--GTCTAAA-TGAGTGTATCAAAGTTCTCACAATGGCACATGTA-AATCCACCTCTTGTCTACCCAAAACTCTAACCAGGCAAAGGCAAGATGGAAGAAT-CAGACAAATGTAAGTG--------CCTAGGATACA----TAAATGCCAC-------------------TGGATTTTATGTTTTTAACTTTCAACCTCCTAAGTTTCACTAAGAGACA-TGTTATTTGGAGAGGTTGCTAAAGTGTAT-TTGTATGATGTC--TCTGTTT-ACGGTTGGTCTGGACCTC--------------------------------------------------TTTCTGTCCAGTGGTTG--CCCTCA----ACTGATGAG---AGTCACGTCTC-TAAAGATCATGCTTACGTCCCTGGAGCAG--TCCACAGCACTGTCAATGTCTG---------ACGTCCACCTTTTTCCAATTAATATTTCTGTACTTACTGAATTGGAAA i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8604615 776 + 24440124 TCTTTTTTTATTGTATTAT---------GAATTGGATTCA---------AACGTATGGTAAGAACAA-TTTTTACCAGTAAAATATTCAACAAATTGTCACAAGAGGGCAGCCTTTTAACATAAATTGTTTCTCAA-TTTGCAGCATTTCTTGAATTTT-AAGTCAGTTGTTTTAATCTACACAACTACATGATAATAAAACAATGCAGGGCATTGAAGAAAACATTT-----TATGAATGCTGTTTC-TTTTTATTACTGCTAATTGAATGTTT---TAATGTATAAGAAATTCAAGGACTGGGT-TGTTTCATGATGAAAGATAATGCTCCTTATGTTTTA-GCTTTCAAATATCAAGGA---AGAAAGTTGAA--ATCTGGCTTGAATTTAACAGATTTCTCAAA---------GG--AATCCATCTCTGATCTAACTGAAATTCTAACCAAATAAAGGCAATATAGAATAAT-AAGAATCATGTGTGTGTGTGTGACCCGAGGGTTAA----CAAATGCTACTTGCTTGTTTCTAATTTTTAACCTTTCAAATTTCTAATTTTCAACCCCTCTAATTTCACAAATACA----------TGGAGATGTTTGTGAAAAGCATTTTGAACGTGGCA----GGTGT-TTGGCTGGTCTCCATCTC-----TAAGTCTTCCAGAGGATGTTGTCACATCAGCGGCATCAGTGTCTCTCTCTGACCAGTGACT---CTCTCT----GCTGAGCAG---AGG---------AGAAGGTCGTGCCCAAGTTCCAGAATTAGGATTCACAGTGCTATGAATTTCTG---------ATCCTCACCT-GCCTCAACTTGCATTTATATAATtactggattgcata i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21974233 792 - 163896628 TTCTTTTTCATGCTATTGTCATAAGGTAGAATTCTATAGAG-----CATAAGGTAAAATAAGATCAA-CTTTTACGAGTAAGACATACAACATATTGTCACAAGAGGGCACTGTTTTAACATGAATTGCTTTTAAA-CAGCAGACATTTCTTGGTTTTTCAAGGCAGTTATTTTCATCCACATAATTAAATAAGAATAAAACAA-AAAAAGCATTTAAGCAGGTATTTTGTTCTATGCATATTATTTC-TGTTTATTATTGCTAATCGAAAGTAT---TAATCCATAAGAAGAAT-GTGCCTGAGC---ATCCATTTAGAAAGATGGATTTACTTAGTTGATA-GCTTTTGAATTTCAGGGT---TTTAAATTTCACTGTCTGAGTTGAGTGTGCCAAAATTCTGACATAACCATGTGT--GAGTCACATCTGATCTGGCCCAAATTCTAGTCAAGCAAAGGCAAGCCCAATATAC-AAGAA-------------------CTTAGGGCAAA----TTAACGTCGC-------------------AAGATTCTATGTTTCAAATTCTCAACCTCCCAAATGCCACAGAGGCATG-AGCTATTTGGAGATTTTGGGAAAGAATAAGTTGCACGATGCGTTTTGGTGTGTGGGCTGCTCTTGATCTCTAACATAACTTATACACAGGGCACTCTCAGGCCAAAGGCTCCAGcaaccctctctgggaagtgattgc-ccctca----actgaatag---aggcacctgttcaaaagataatgctcttg-tccagggtcag--ctcacaATACTCTAACTGCATG---------ATCTCCACATGGACCCAACTGGGATTTCTGGGCTTATTGAATTGGAAA i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28489671 790 - 41866177 GTCTTTCTTATGTTATTAT---------GACTTGGATTTTGGAGGGTATAAG-----ATAAGGTC-A--TTTTACCAGTAAAACACACAACACATTGTCACAAGAGGGCAGCCTTTCAACATGAATGGTTCCTCAATCTGTAGACATTCCTTGAAATTTTGAGGCAGTTACTTTAATCCACACAACTAAATAATGATAAAACAATACAAAACATTCAAGCAGATGCTTTGCATCGTGTGGTTGTTTTT-TTTTCATTACTGCTAACTAAAAATATTTAAAGTCCATAAGGAAAACAAGGGCTGAAT-TGTCTCACATAAAAAGATGGGTTTACATAGATTCTGCCTTTTTAAACATCAAGAC---AGTAGATCAAT--GGCTGAATTGAGTATACCAAAGTT-TCACGTGACCAAATGTG-AATTCTCCTCTGATCTACTCAAAATTCTAACCTGGCAAAGGCAAGCTGGAAGCATCCAGACTGATATATCAG--------CCAAGGGCAAA----TGAATGTCGT-------------------TGGATT-TATGTTTCTAAATTTTAACCTCTCAAGTGTC-TAAAGACACAATGCTATTTGCATATATTGACAAAGAGTAAATTGCAAGATGCC--TTGGTGT-ATGGCTGGTCTTGATCCG-----TTGGACATGCAGAGGACGCTCTCAGTTCAGCAGCATCAGCA----TCTCTCCC-TGCACTCCCTTCCTGTGTcctcagaatag---agttgcctctc-ccaaagtcacgtgtccttcccgggagcag--cccacagtgctctaaatgcctg----------gcctcaccttgcttcaattttggTTTCTTTactcactgaaatggaaa i equCab2.chr26 C 0 I 927 s canFam2.chr31 28135117 706 - 42263495 ATCTTTTTAATCCTATCGT---------GAATTGGATTTTAGTGGGGGT--------ATAAGGTC-AAGTTTTACTAGTAAAACATACAACACATTGTCACAAGAGGGCAGCCTTTTAACATGAATTGTTCTTCAACCTGTAGGCATTACTTGAAATTTTAAGACAGTTAC-TCAATGTCTTTTACTA---AATGATAAAACAATACAAAATATTCAAGCAGATATTTTAATTTATTCATGTTGGTTT-TCTTCATTACTTCTAAC-AAAAATATTTTAAATCTATAAAGAAAACAAGGGCTGAAT-TGTCTTATGTAGAAAGATGGGTTTACATGTATTATA-CTTTTTAAACATCAAGTCAGTAGTAGGTCAAT--GGCTGAGTTGAGTGCACCAAAGTT-TTGTATGACTAAATGTG--------------------------TCTAACCAACCAAAGGCAAGCTGGAGGCATCCAGACTGATATTTTAG--------CCAA-GGCAAA----TTAACATAAT-------------------TGAATT-GCTTGTTCTAATTTTTAAACTTTTAA-TGTC-TAGAGACACAATGCTGTTGG-ATATATTGATAAAGAGTTAGTTGCAAAATGTC--TTGGTGT-ATGGCTGAGCTTGGTCTG-----TAACACA-------------------------------------------------------------------GCGGGATAG---AGTCACTTCTA-CCAAAGTCATGAGATGTTTCCAGGAGTAG--CACATGGTGTTATTACTACCTGACCCCACTTTGCCCCACCTTGCTCCAAGTTGGGTTTCTCTTcttactgaactggaaa i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22904071 771 + 161106243 ttCTTTTTAATACTATTAT---------GAGTTGATTTCTAAAGGGT----------ATAAGGTC-A-GTTTTACCAATAAAACATAAAACACATTGTCACAAGAGGGCAGCCTTTTAACATGGATTGTTCCTCAACCTGAAGCCATTCCTTGGTAACTTAAGACAGTTACTTTAATCCACGTAACCAAATAATGATAAAACAATACAAAATATTCAAGCAGATATTTTGCATTCTGCATGttttttt-tttgtattattactaat-aaaaatatttaaaaCCGACAAGGAAAATAAGAACTGAAT-GGTTTCATGTAGAAATAAGGGTTTATATAGGTTGTA-TCTTTTAAATATCAA--C---TGAAGGTCAGT--GGCTGGGTTGAATGCACCAAAATC-TCATATGATCAAATGTGAAATTCTCCTCTGAGCTACCCAAAATTCTAACCAAGAAAGGGCAAGCTGGAAGGATCCAGACTGATATATTAC--------CCACAAGCAAA----TGAATGTCAG-------------------TGGATG-TATGTTTCTAATTTTTAACTCAGAAACTGCG-TAAAGACACAGGGCTATTTGGACATATTGATAACAAGTACAT-------TTTC--TTGGTA--ATGGCTGGTCTTG-TCTG-----TGAGACACAGAGAGGGCACCCTCAGATCAGCAGTGTCA-CA----TCTCTCCCAGGCTGTCTGACCCTGT----CCGAGGCTGACCAGTTACTTCTC-TCAAAGTCA-GTGTTCTTTCCAAGAGCAG--CCCACAGTGCTATAAATGTCCA------TCTTGCCCCAACTTGCTCCAATTTGGGCTT-----cttacagaactggaaa i bosTau4.chr1 I 1277 C 0 s loxAfr3.scaffold_13 41910650 729 + 62548349 TTCTTTTTTATGCCGTTAT---------GAGTTGAATTCTAAAAGGTCTAAG-----ATGAAGTT-AGGTTTTACCAATAAAACATACAACATATTGTCACAAGAGGGCAGCCTTTTAGCATAAATTTTTCCTCAACCTGTAGAAATTTCTTGAAAGCT-------GTTACTTTAATCCACACAACTA-AT---GATAAAACAATATAAAACATTTAAGCAGATAAGTTG----------GTTAATTT-TTTTTACTACTGCCAATTGAAAATATTAAAAATGTGTAAGGAAAGCAATGGCTGAAT-TGCCTCACATAGAAAGATGGTTTTCCTTAGGGTATA-TTTTATAAACATCA-------CCTACGTCAAG--GTC-----TGAGTGTACCAAAATTCTCACGTGACCAAACGTG-AATCTATCTCTGATCTGCCTAAAATTTGAACTAAGCAGAGGGGAACTGGACGAATCCAGACTGATGTATTAG--------TCAAGGGCAAA----TGGATGCAAT-------------------TGGATA-TATGTTTCAAAGTTTCAGCCCC-------------AGACACAATGTTATGTGGATATGATGATAAAAAGTAAATTGCAAGAACTC--TTGTGGT-ATGGCTGGCATTGGTCTC-----TAAGATCTACAGAGGGTACTCTCAGGTCAGCAGTATGGGAA----ACTCCCC------attg--ccctca----gcaaaatag---aatcacttctc-ccaaggtcatgaccccttccctggagcag--cctaaagtgctattaatgcctg--------------------gctccaatttgagtttctatactcattttattgaaaa i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=43735.000000 s hg19.chr4_gl000194_random 148254 103 + 191469 ACATACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTAC-AACACTCCCCCCGCTTCCCCACCACTGccccaggtgatttt---gatgccagccaaagtgtgagaac s rheMac2.chr2 273607 101 + 189746636 ACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTAC-AACACTACCCC--TCGCCCCACCACTGccccaggtgatttt---gatgccagccaaagtgtgagaac i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3511522 103 + 6711082 ACATACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTAC-AACACTCCCCCCGCTTCCCCACCACTGccccaggtgatttt---gatgccagccaaagtgcgagaac i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605391 77 + 24440124 ctgcacagttg----gtgcctggttgtctgtggtttcac-aacctgcctcc----------------------gtgctttc---aatgcaaggtaagttgtgagagc i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975025 88 - 163896628 CTGCTCAGGTG----GCGCCTGGCTCTCTGTGATTGTACTAACCCACCCAC---------------AACTCAGGTGCTTTTTAAAATGCCATCTTATCCTTATGAAT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22904842 54 + 161106243 --------------ctctcccagccaactgtggtttcac-aa---gccctc-------------------gaggtaactct---gat-------------tgagaac i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28135823 54 - 42263495 --------------ctctcccagccagttgtggcttcac-ag---gccctt-------------------caggtgattct---aat-------------TGAGGAC i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41911379 76 + 62548349 ---ctctgaag--ttaggcccagctacccgtggttttac-aa---tccctc-------------------caggtgattct---gatgcaagctaaaatgtgagaTC i loxAfr3.scaffold_13 C 0 C 0 e equCab2.chr26 28490461 927 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=79124.000000 s hg19.chr4_gl000194_random 148357 97 + 191469 tactgGCAGCTGCTGGCCGACAGCAGCAAAGGCCCAAATCCTC-TGTGTGACTTCAAGACCCGTATCTGGTTT-----TCAGCCATATTTCCTTCTCCTTCTC s rheMac2.chr2 273708 97 + 189746636 tactgGCAGCTGCTATCAGAGAGCAACAGAGGCCCCAATCCTC-TGTGTGATTTCAAGACCCGTATCTGCTTT-----TCAGCCATGTTGCCTTCTCCTTCTC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3511625 97 + 6711082 tactgGCAGCTGCTGGCAGACAGCAGCAAAGGCCCAAATCCTC-TGTGTGATTTCAAGACCCGTATCTTGTTT-----TCAGCCATATTTCCTTCTCCTTCTC i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605468 87 + 24440124 tactAGCAGCTGCTGTCAG--AGCAACAAA-ACCAAAGTCCCT-GACCTAGTTTAAAGCCCTGTGTCTGATTT-----TCAGCT-------CTATTGCTATCT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975113 91 - 163896628 TACTAACAGTTGCTGGCAGCAACCAACAAAGGTTCAACTCCCT-TGTGTGGTTTACAGA-----GCCTGTATT-----TTAGCCG-ACTAGCTCCTCCTCTCC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22904896 95 + 161106243 tactgGAAGCTGCTGGCAGACAGCAACAAA-GACCATATAGCCCCATGGGGTTTAAAGACTGCA--TGAGTTT-----TTAGCCTTAATACTTTTCTCCTATC i bosTau4.chr1 C 0 I 493 s equCab2.chr26 28491388 103 - 41866177 TACTGGCAGCTACTGACAGAGAACAATGAAGGGCCAAATCACCTTGTGTGGTTTAAAAACTGCAACTCGTTTTCAGCCTTAACCTTAATACCTCTCTCCTATC i equCab2.chr26 I 927 I 1 s canFam2.chr31 28135877 90 - 42263495 TATTAGCA---ACTAGCAGAGAGCAACAAAGGATGAAATCTCC-CATATGGTTTAGAGACTGCATCTAGTTTT-----TCAGCCTTAACACCTCTC----ATT i canFam2.chr31 C 0 I 1 s loxAfr3.scaffold_13 41911455 84 + 62548349 ----------TATGGCTTGAGAGGAACAAAGCTCCAAATCCCC-CATGTGGTTTGAAGACT---ATCTGGGGT-----TCAGCTTTTTGCCCTGTTCCAATTC i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=31936.000000 s hg19.chr4_gl000194_random 148454 109 + 191469 ACAGCT--GAGTCCACT-------------------CCTCCT--------CCCTC---------------ACCACCTGTAGGCTATGCTTTCCAGCCTGTGTCCAGGATTAGTCCTGATGTAAGGCACGTGGGG-----------------------------------TTTAAGGAGCTCT-CTCTT-C- s rheMac2.chr2 273805 109 + 189746636 ACAGCT--GAGCCTACT-------------------CCTCCT--------CCCTC---------------ACCACCTGTGGGCTATGCTTTGCTGTCTGTGTCCAGGATTATTCCTGACGTAAGGCACGTGGGG-----------------------------------TTTAAGGAGCTCT-CTCTT-C- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3511722 109 + 6711082 ACAGCT--GAGCCCACT-------------------CCTCCT--------CCCTC---------------ACCACCTGTAGGCTATGCTTTCCAGCCTGTGTCCAGGATTAGTCCTGATGTAAGGCACGTGGGG-----------------------------------TTTAAGGAGCTCT-CTCTT-C- i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605555 103 + 24440124 CCAGTTTAAGGCTGAAT------------------------------------------------------CCAATTTTAGGCAGTTCTTTCCTCTTCATGTCCATGATTGGTCCTGACCT-------GAGTAAGAC----------------------CCCAGTTA--CTTGAGGAGCTCT-CACCAA-- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975204 137 - 163896628 ACAGCT--AGGCACACT-------------------CTTCTC-----------------------------CCATCTGTGTGTTACATTCTCTTCCCAGTGTCCAAGGTGAGCCCTGACCTAAGGCAGGAGGAGGACTtcgcagagcttgcatggaagacttatttatttttaaaaagattt-tattt--- i oryCun2.chr14 C 0 I 290 s canFam2.chr31 28135968 131 - 42263495 ACAGCC--TGGCCCTTTACCAGCCCTCCCCTCTCCCTTTCCT--------GCTCCTAACA------CACCAATATCCATAGGCTACA-------CTATGTGTCTAGGGCTAATCCTGACCTATGGCAGAAGGGA-----------------------------------TTGAAAGACCTCATTTTTT-G- i canFam2.chr31 I 1 I 1 s equCab2.chr26 28491492 116 - 41866177 ACAGCC--TGGTCCTTT-------------------TGCGCT--------GCCCCTAACA------CACACATATCTGTAGGCTATACTTGC--CTCTGTCTCTAGGACCTATCCTGATCTATGGTAGAAGGGA-----------------------------------ATGAATGAGGTCA-CATTT-G- i equCab2.chr26 I 1 I 1 s loxAfr3.scaffold_13 41911539 133 + 62548349 ACAGCT--GAGTCTACC-------------------CAACTTGGGGTGGCCCGTCTCACACCTTCCCAGACGTACCTATAGGCTATACTTTCCTCCCTATCTTTAAGACCAATCTTGACCTATGGTAGAAGAGA-----------------------------------TTTAAGATGCTCC-CATTG-GA i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22904991 493 + 161106243 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=60827.000000 s hg19.chr4_gl000194_random 148563 54 + 191469 AGTCTTATTTCCACACCATCTCTGACAGATATA------TTCCAGTTGTAATCATGGGG-C s rheMac2.chr2 273914 54 + 189746636 AGTCTTATTTCTGCACCATCTCTGACAGATGTG------TTCTAGTTGTAATCATGGGG-C i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3511831 54 + 6711082 AGTCTTATTTCCGCACCATCTCTGACAGATATA------TTCCAGTTGTAATCATGGGG-C i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605658 51 + 24440124 AGAC--ATTGCTACGTCATCTCTGATGGATTTA------TTC-AAGTGTAATTGTGGGG-C i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975631 54 - 163896628 AGACTTATTTTTGATTCAAAGCAGATGGCTTTA------TTCTAAATGTAATCATGGGA-C i oryCun2.chr14 I 290 C 0 s canFam2.chr31 28136100 59 - 42263495 AGTTGTATTCATGCATCACCTCTGATAGTTGTAGAGTA-TTCCTGTAATAATTATGAGAC- i canFam2.chr31 I 1 I 1890 s equCab2.chr26 28491609 58 - 41866177 AGTTTTATTTCTGCATCATTTCTGACAGTTATGGAGTA-TTCCAGTTATGAGCATGGGC-- i equCab2.chr26 I 1 C 0 s bosTau4.chr1 22905484 56 + 161106243 --TTTTATTTCTGCATCACTTCTGACAGTTATGGAGTT-TTCCAGTGATGTTCTTAGGC-- i bosTau4.chr1 I 493 C 0 s loxAfr3.scaffold_13 41911672 59 + 62548349 AGATTTATTTCTGCACCACCTCTGACAGTCATAGGGTATTGCAGGTTGTGACTGTGGGT-- i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=76090.000000 s hg19.chr4_gl000194_random 148617 96 + 191469 TACCTCCTCTTGTTTCCAGTCCCAATCTCGTTTTCTCTATCACATTCTACC------TTGTAATAACCTAAATCTTCTGGTGGGCA---AGCTTCTTCCTC--AATC s rheMac2.chr2 273968 95 + 189746636 TACCTCCTTTTGTTTTCAGTCCTATGCTCTTTTTCTCTATCATATTCTACC------TTGTAATAA-CTAAATATTCAGGTGGGCA---AGCTTCTTCCTC--AATC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3511885 96 + 6711082 TACCTCCTCTTATTTCCAGTCCCATGCTCGTTTTCTCTATCACATTCTACC------TTGTAATAACCTAAATCTTCTGGTCGGCA---AGCTTCTTCCTC--AATC i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605709 95 + 24440124 TAGC-CACGTTGTTTCCATTCCTGTG-TTGTTTTCTCAACCCTTTTCTACT------GTATGGCCACCTCAGCCATCTGGTGCATAACCAGATGTTTCCT---ACT- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975685 90 - 163896628 -ACA-CACCTTGATTCCAGCCCCATGCTTCTTTCCTCCACTACTCTCTACC------TTGAAATTCCCTCAATCTCCTGGTGAGTA---AAGTGTCTTCTT------ i oryCun2.chr14 C 0 I 5 s bosTau4.chr1 22905540 101 + 161106243 TGCC-CCATTTATTTCCAGTCTTCTTCTCTTCCTCTCTAGCACTTTATACCTTATAATTATAATTATCTGAATAATTTGGCAAGTA---AGTTTCTGTCTCCAAA-- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28491667 95 - 41866177 TATC-CCATTTGCTCCCAGTTCCACGCCCTTCCTCTCTACCACTTTCTACT------TTGTAATTACCTCAGTAATCTGGTAAGTA---AGTTTCTGCCCCCTAA-- i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41911731 96 + 62548349 TACCCCCATTTATTTCTAGCCCCATGCCTACTCTCTCTCCAACTCTCTACC------TCATCATCACCTCAATATTCTGGTAAGTA---AACTTTTGTACA--AATT i loxAfr3.scaffold_13 C 0 C 0 e canFam2.chr31 28136159 1890 - 42263495 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=11900.000000 s hg19.chr4_gl000194_random 148713 19 + 191469 AAATTTGTGTTTATGA----TTG------------ s rheMac2.chr2 274063 23 + 189746636 AAATTTGTGTTTATGAGTTCCTG------------ i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3511981 19 + 6711082 AAATTTGTGTTTATGA----TTG------------ i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605804 21 + 24440124 AAATCCCTGTTTTTCAAC--GTG------------ i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975780 21 - 163896628 AAATCTATGTTTCTGAGT--TTG------------ i oryCun2.chr14 I 5 C 0 s bosTau4.chr1 22905641 23 + 161106243 GAATCTATATTTCTGCACTCCTG------------ i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28491762 23 - 41866177 AAATCTATATTCCTGAGGTCCTG------------ i equCab2.chr26 C 0 I 1 s loxAfr3.scaffold_13 41911827 35 + 62548349 AAATCCATCCTTCCAAGTTCCCGTTTTTGTAATTG i loxAfr3.scaffold_13 C 0 I 204 e canFam2.chr31 28136159 1890 - 42263495 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=52852.000000 s hg19.chr4_gl000194_random 148732 68 + 191469 TGTT--GGGGATTGGCATAGTAATCCAGGTACTGCTACTGCCTTGAAAG-CGGAGACTGCATCCTTCTGTC s rheMac2.chr2 274086 68 + 189746636 CTTT--GGGGATTGGCCTAGTAATCAAGGTATTGCTACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3512000 68 + 6711082 TGTT--GGGGATTGGCATAGTAATCCAGGTACTGCTACTGCCTTGAGAG-CGGAGACTGCATCCTTCTGTC i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605825 49 + 24440124 CATT----------GCCAA-----------ATTCTCACGTCTGTGAGTG-TCCCTGGTGCATCTTTCTGTT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21975801 70 - 163896628 CATTTTGGTAATTAGCTCAGTAGTCCTGTTATTCTTACTACCTTGAATG-CTCAGAATAAGTCTTTTAGCT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22905664 67 + 161106243 TTTT--GGTAATTGGCTTGGTATTCCAGTCATTCTCACTGCCTGGAAGC-CCAACAG-AAAGCCTTCTGCC i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28491786 68 - 41866177 TTTT--GGTAATTGGTTTAGCAGTCCAGTTATCCTTATTGCCTTGAAGT-CCCAGAGCACAGCCTTCTGTC i equCab2.chr26 I 1 I 210 s loxAfr3.scaffold_13 41912066 68 + 62548349 CACT--GGTAATTGGCTTAG-AGCCCAATTATTCTTGCTGTCTTGAATGCCCCGGAATGCATTTTTCTGCC i loxAfr3.scaffold_13 I 204 C 0 e canFam2.chr31 28136159 1890 - 42263495 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=52111.000000 s hg19.chr4_gl000194_random 148800 149 + 191469 TGGATATCT--TGAGTTTCT-GGATTGTAAACCTTATTAGGGCC-C------ATTTTTC--------------------CTAGAATTGGAGCCTCTACTTTGTTCTTGCTA-CTTTAGT--------------------------------------------TCACCCAGAAA-GCACGATCTCTGCCTGAATTTCAAAGT-----------------GTTGGCTAGTTTAAATATCCATT s rheMac2.chr2 274154 152 + 189746636 TGGATTTCTTCTGAGTTTCT-GGATCGTAAACCTTATTAGGGCCTT------ATTTTTC--------------------CTAGAATTGGAG-CTCTCCTTTGTTCTTGCTA-CTTTAGT--------------------------------------------TCACCCAGAAAGGCATGATCTCTGCCTGAATTTCAAAGT-----------------GTTGGCTAGTTTAAATATCCTTT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3512068 149 + 6711082 TGGATATCT--TGAGTTTCT-GGATTGTAAACCTTATTAGGGTC-C------ATTTTTC--------------------CTAGAATTGGAGCCTCTACTTTGTTCTTGCTA-CTTTAGT--------------------------------------------TGACCCAGAAA-GCACGATCTCTGCCTGAATTTCAAAGT-----------------GTTGGCTAGTTTAAATGTCCTTT i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8605874 163 + 24440124 ACGAC-TATCCTGAA-ATTT-GAATCATAAAC-TTGTTAAGATG-C------ATTCCTCCA---------------CAACAAAGATTAGAA-CTCTACTTTCTGTTTGCTAGTTTTCCT--------------------------------------------CTACCTAGAAA--AATAATCCCTGC------TTCAAATTCTAATGCTCTTCTAGAAGTTAATCAATTTAAAGATTGATT i cavPor3.scaffold_34 C 0 I 2019 s oryCun2.chr14 21975871 136 - 163896628 TTGGCTTCTCCTGAATCTTT-GAATTATAAAC--CGTCATAATA-C---CCTGTTTCTTC-------------------CTAAGATTGCCT-CTCTCTTTTCTTCTTGCTTGTTTTCTT--------------------------------------------CCACTC------------TCTGAGT------TTCAAAGT-----------------ATTGACTATTTGACATGCTCTCT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22905731 175 + 161106243 TTGGCTGCTTCTAAATTTTT-GAATTATACATCTTCGTAGGGTC-taattttatttttttaattttattaGCTTTTATTATAAAGCTGGAT-CTCTGCTTTTTTCCTGCATGTTTCACT--------------------------------------------CAACCTAAAGG--TCTAAACTCTTTCTGAATTTC-AAGT-----------------ATTAGTCACTTTAAATGTCCTTT i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41912134 197 + 62548349 TTGGCTCCTTCT---TCTCTAGGAGTAGAAACTTTCTTATTGTC-C-----CATTTTCCCCCC----------------CTAGAACTGAAT-GTCTGCTTTGTTCTTACTAATTTTACTCAGAGAAAGTAAAACTTAGTGCCTCAGACTCAAGTACTGACTGGCCACCTAGATG--ACCAATCTCTGCCTGAATTTGAAAGT-----------------ATTGACTATTCTAAATTTCTTTT i loxAfr3.scaffold_13 C 0 C 0 e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=62815.000000 s hg19.chr4_gl000194_random 148949 121 + 191469 TGTGAGACTTTTGTCTTCCTGCGGG----GTGATTTTTTCATCTTACATATCATTGCTAATCTTTT-TACCTTGAATATAATTGAAATAGTTTTAATCTGTG----TTACCAGCAACAAGAACCCCTTTT s rheMac2.chr2 274306 121 + 189746636 TGTGGGACTTTTGTCTTCTTGTGGG----GTGATTTTTTCATCTTAGATACCATTGTTATTCCTTT-TATCTTGAATGTAATTGAAGTAGTTTTAATCTGTG----TTACCAACACCAAGAATCCCTTTT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3512217 121 + 6711082 TGTGAGACTTTTGTCTTCCTGCGGG----GTGATTTTTTCATCTTACATATCATTGCTAATCTTTT-TACCTTGAATGTAATTGAAATAGTTTTAATCTGTG----TTACCAGCAACAAGAACCCCTTTT i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21976007 128 - 163896628 TGGGGGA-TGGTGACTTCCTGTGTGTGATAGAATTTTTGCATCTTGCATGTCATTTGCAACCCTTT-TGTCTTGAATGTGTTTGAAATAGATTTAATCCCTAGTACTTGCCAACAGCAAGGATAGTCCCT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22905906 107 + 161106243 TGTGGGA----------------GA----TAGACTTTTTCATCTGAGACACTGTTGCTAATCCACT-TTTCTTGGATGTAATTCA--TTAGTTTACTCTGTATCATTTTCCAGTAGAGAGGACCTTCTTT i bosTau4.chr1 C 0 I 6218 s loxAfr3.scaffold_13 41912331 114 + 62548349 TGTAGAG-TTTCGACTTCCTATGGGTGA-CATACTTTTTCATCTTAGACACCACTGCCAATTTTTTAAATCTTGAATGGAATTGAAATAATTCTAATCTATA----TCACT----------GCTGTCTTT i loxAfr3.scaffold_13 C 0 C 0 e cavPor3.scaffold_34 8606037 2019 + 24440124 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=49426.000000 s hg19.chr4_gl000194_random 149070 160 + 191469 ATGAGATGAAGAGGCCAGGTCAGTCTCATAACTTGTGTACCCCTCCGTGTGTTGAATTTATGT-CAGAGCCAGGTTCTTTCCTAT------------TTGATGTCTCT-----------CACCAAATTC-----CAGTGTTTATGTCCTAGGAGGTGCCCAATAAATTCTAGAGTTGATACAAGCTGTA s rheMac2.chr2 274427 160 + 189746636 ATGAGATGGAGAAGGCAGGTTAGTCTCATAGCACGTGTCCCCCTCCATGTGTTGAATTTATGT-CAGAGCTAGGCTCTTTCCAAT------------TCGATTTCTCC-----------CACCAAATTC-----CAGTGTTTATGTCCTAGGAGGTGCCCAGTAAATTCTAGAGTTGATACAAGCTGTA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3512338 160 + 6711082 ATGAGATGAAGAGGCCAGGTCAGTCTCACAACGTGTGTCCCCCTCCGTGTGTTGAATTTATGT-CAGAGCCAGGTTCTTTCCTAA------------TTGATGTCTCT-----------CACCAAATTC-----CAGTGTTTATGTCGTAGGAGGTGCCCAATAAATTCTAGAGTTGATACAAGCTGTA i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21976135 164 - 163896628 CAGACCTTGAAAGCCCAA--CAGTTTCCTAGCACGTGTCTGGTGCCGCGTG-----TCCACGTGCAGAGCCCAGCAATTTCCTACTTGCCCTGCTCGTTGATTTATC------------CACCAAATTC-----CTTTGCGTGTATCTCAGAAGCAGCCCAATCAATTGCAGGATTGCTGTAAGCTGT- i oryCun2.chr14 C 0 I 3196 s loxAfr3.scaffold_13 41912445 172 + 62548349 ATTAGATCTTGAAGGTAGGGACGTTCCCCAGAATGTTT----TACCACTTGTGGACTTTAAGG-CAGAGCCAGGTTCTTCCAACTTTGCCCGGCT--CTGTTCTCAGTAATTAGACCTGCTCCAAGTTCCACGGCAATGCTCATGTGCCAG---------AGCAATTCCTAGGGTTGACAGAAGCTAT- i loxAfr3.scaffold_13 C 0 I 2072 e bosTau4.chr1 22906013 6218 + 161106243 I e cavPor3.scaffold_34 8606037 2019 + 24440124 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=108952.000000 s hg19.chr4_gl000194_random 149230 336 + 191469 ATTTTAG-----------AGAAATTAAATT-------------------------------------AGCAAGTAGAATTAGATTATATACAACCTAATCA--ACTTTTTTTTTTT------CCCTGAGGATGACCAAGATTTGGGCTTCAGTGACAATAGTTATCCCCTAAATATTTATACTC--AATctaggatcaccagtaaaatgttgaatagaggtgatgaacacacacatctttttcttgtcctaatctatgtggtttaaacatttacgctttcacaattaaatataatattgtttatatgttttgttgtggatgctttccaccacttc------------------------tagaaaatttctttttctaacttgctgagag--------------------------------------------tttttTTTTTTAATCAGCaatagatatt s rheMac2.chr2 274587 436 + 189746636 ATtttagcaatttaatttagaaattaaattaagcaacttaatttaATTTCTCTAAAATTAAGCCCAAAACAAGTAGAATTAGATTGTATACAACCTAATCA--ACTTTTTTTTTTTTTTTTTTCCTGAGAATGACCAATATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATctaggatcaccggtacaatgttgaatagaggtgaagaacacacacatccttttcttgtcctaatctatgtggtttaaacatttaggatttcaccattaaatatagtattgtttatgtgttttgttgtggatgctttccatcacttt------------------------gagaaaatttctctttctagcttactgagagtttttTGTTAGtttgtttgtttgtttctttttctttttctttttttttttttttAAATCAGCaatagatatt i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3512498 335 + 6711082 ATTTTAG-----------AGAAATTAAATT-------------------------------------AGCAAGTAGAATTAGATTATGTGCAACCTAATCA--ACTTTTTTTTTTT-------CCTGAGGATGACCAAGATTTGGGCTTCAGTGACAATAGTTATCCCCTAAATATTTATACTC--AATctaggatcaccagtacaatgttgaatagaggtgatgaacacacacatccttttcttgtcctaatctatgtggttgaaacatttacgctttcacaattaaatataatattgtttatatgttttgttgtggatgctttccaccacttc------------------------gagaaaatttctttttctagcttgctgagag--------------------------------------------tttttTTTTTTAATCAGCaacagatatt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8608056 279 + 24440124 ATTTTTG-----------ATAAATTAAGTT------------------------------------------TAATATTTAGAACACATAGAATTGAATCA--AATTTTTT------------CCTGAGAAAAACCAAGATGTTTTCCTTCATGATAATACTTATCCTATAAATAATCATA------------------TAATTTCATGATGAATGGTATGAATGAAGGTAGATATCCTTTGCTTATATTAAACTATTATATTTAAACTCACATAT-----------AATACAGTATTGTTTGT-------Gttatggatgttgtatatcatttt------------------------ggggaggtttcttc-----atttgctgacag---------------------------------------------------ctttaatcagcagtagatgtt i cavPor3.scaffold_34 I 2019 I 8902 s oryCun2.chr14 21979495 293 - 163896628 ------------------------------------------------------------------------------TTAGAAAGTATATAGTCTAATCAGGATGTTCCC------------CCTGAGGATAACAAAGATTTGGGACTTAATGACAATAGTTGTTTTCTAAATACTCAtgctcaagtttgaggacctccagtacaatgttgaacagaaatcacacatggaggcatccttttcttgtcctattctataggaatcaaacatctagac-----------agc-caccattatttgt-------------aatattatttaccaccttgcctagtgatgcgatcaacgactcggaggagtttctttctttagtttgctgagag------------------------------------------------------tgatcagcaatggctatt i oryCun2.chr14 I 3196 I 8974 e bosTau4.chr1 22906013 6218 + 161106243 I e loxAfr3.scaffold_13 41912617 2072 + 62548349 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=312164.000000 s hg19.chr4_gl000194_random 149566 1275 + 191469 tctccaaagaaaatatccaaattaccaacaggtacatgaaaaaaatgctcagcatcactaatcatcagggaaatgcaaatcaaaaccacaaagagat-attgcctcaagcctgttagaatggtctgattaaaagaaaaagataacgagtgttaacaa---tggggagaaattggaacacttgtacagtgtttctgggaaagtaaaactgtgcagcctctatggaaaacagtacagttgttcctcaaaaaaattaagaaagtagaactaccatatgatctagcaatctcacttcaggttatttatctgaaagaattgagattgggatgattctcaggctcattgcagcattatttacactaatcaaaatgtggaaataaggttaatgtttattggcagatgaatagataaagaaaatgtggtatattcatacaacggaatattattcagctttaaaac-aagaaaatccggcaatatgcaacatggatgaacctagaggacattaatgctacgtaaagtaaatcagtcacagaaggacaaactgtatgattccacttgtataaagtatctaagatagccaaattaattagaatcacagattagaatggtgatagccCTTTAAGTTGAAATCaattttacattcctgggttttgt--agttttgctatcaggattctgactcataaaacaagtttggaattccccccttc-----ttctgaaataatttaaaaattttattt--ttttaaaacgtttgaaagaattcaccagcaaaactctttggatgtggagtttgcttattttttta-tttctttagttttatgtttttatgtgcaggtatttgac----aatttaattactttaataaatgtcaattacttcatatattccatttaatcttgtgaaattttttataagttt-cttttcaaggaattcaccctttcatccaagtaatgaaaattagtataaaatgtttcacaatattctattatcttgttaatgtctcttgtgtctacaactgtacaatctcattaatccctgatatttataatttgcgttttctttctttctcacagaactaacttttggccatgttaattttctcctgtgtctgttttctgtctcattgatttctaatttctgttttattttctttcttctacttgttttggacttaatttgctctcttgttttagattttctttttaaggtagaaaattagtgcacttgttttgaacttctcttttttagaataagcatttatacaaaaaatttactctgggtctgcttaac s rheMac2.chr2 275023 1281 + 189746636 tctccaaagaaaatatccaaatgaccaacaggtacatg-aaacaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacgaagagataattgcctcaaacctgttagactggtcttattaaaagaaaaagataatgagtgttaacaatggtggggagaaattggaacacttgtacagtgtttctgggaatgtaaaactgtgcagcctctatggaaaacagtatggtggttcctcaaaaaaa-taacaaagtagaactactgtatgatctagcaatctcacttcaggttatttatctgaaataattgaaattgggatgattctcaggctcattgcagcattatttacactattcaaaatgtggaaataaggttaatgtctattggcagatgaatagat-----aaatgtagtatattcatacaatggaatattattcagctttaaaaagaagaaagccctgcaatatgcagcatggatgaacctggaggacattaatgctaagtagagtaaatcagtcccagaaggacaaactgtatgattccacttgtatgaagtatctaagatagccaaattcattagaatcacagattagaatggtgatagcTCTTTAAGTGGAAATCGATTTTGCCTTCCTGGGTtttgtaaagttttggtttcaggattctgactcataaaacaagtttggcatttcccccttctttatttctgaaataatttagaaattttattttattttttaatgtttgaaagaatttgccagcaaaactctttggatgtggagtttccttatttttaaattttctttagttttatgtttttatgtgcaggtatttgacaattaatttaattactttaataa----cagttacttccaatattccatttagtcttgtgaggttttttgtaagtttttttttcaaggaattgaccctttcatccaagtaatgagaattgctataaaatgtttcacaatattccattatcttgttagtgtctcttgtgtctacagctgcacaatctcattagtccctgatatttgtaatttgcattttctt--tttctcacagaactaa-ttttggccatgttaattttccccaatgtctgttttctgtctcattgatttctaatttctgttttatttcctttcttctacttgttttgggcttaatttgctctcttgttttagattttctttttaaggtagaaaattagttcatttgttttgaacttctcttttttagaacaagtatttatacaaaaaatttattctaggtttgcttaac i rheMac2.chr2 C 0 I 1 s panTro2.chr4_random 3512833 1273 + 6711082 tctccaaagaaaatatccaaattaccaacaggtacatgaaaaaaatgctcagcatcactaatcatcagggaaatgcaaatcaaaaccacaaagagat-attgcctcaagcctgttagaatggtcttattaaaagaaaaagataacgagtgttaacaa---tggggagaaattggaacacttgtacagtgtttctgggaaagtaaaactgtgcagcctctatggaaaacagtacagtggttcctcaaaaaaattaagaaagtagaactaccatatgatctagcaatctcacttcaggttacttatctgaaagaattgagattgggatgattctcaggctcattgcagcattatttacactaatcaaaatgtagaaataaggttaatgtctattggcagatgaatagataaagaaaatgtggtatattcatacaacagaatattattcagctttaaaac-aagaaaatccggcaatatgcaacatggatgaacctagaggacattaatgctaagtaaagtaaatcagtcacagaaggacaaactgtatgattccacttgtataaagtatctaagatagccaaattcattagaatcacagattagaatggtgatagccCTTTATGTTGAAATCAATTTTGCATTCCTGGGTTTTGC--Tgttttgctatcaggattctgactcataaaacaagtttggaattccccccttc-----ttctgaaataatttaaaaattttattt--ttttaaaacgtttgaaagaattcaccagcaaaactctttggatgtggagtttgcttattttttta-tttctttagttttatgtttttatgtgcaggtatttgac----aatttaattactttaataaatgtcaattacttcatatattccatttaatcttgtg-aattttttataagttt--ttttcaaggaattcaccctttcatccaagtaatgaaaattagtataaaatgtttcacaatattccattatcttgttaatgtctcttgtgtctgcaactgtacaatctcattaatccctgatatttataatttgcgttttctttctttctcacagaactaacttttggccatgttaattttctcctgtgtctgttttctgtctcattgatttctaatttctgttttgttttctttcttctacttgttttggacttaatttgctctcttgttttagattttctttttaaggtagaaaattagttcacttgttttgaacttctcttttttagaataagcatttatacaaaaaatttaccctgggtctgcttaac i panTro2.chr4_random C 0 I 37313 e bosTau4.chr1 22906013 6218 + 161106243 I e loxAfr3.scaffold_13 41912617 2072 + 62548349 I e cavPor3.scaffold_34 8608335 8902 + 24440124 I e oryCun2.chr14 21979788 8974 - 163896628 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=166991.000000 s hg19.chr4_gl000194_random 150841 680 + 191469 ttatcccacatattttgatatagtatatttttatttgtattcagttcaatgtattttaaggtgtttcttatgatttcttccttgagctaaagggcattttaaggtgtatttaaatcttccaatagtgtagactttcctgggtagcttgttttcacccatttcaactcaatttcattatggtcagaaagtatactttctatgattacagtgttttgaaacttcttgacagatattttgtggtctatagcctattgataaatgtttcatgtgtagcataatagaacatatattctATTTTCTTGGTCAATATCGATTAGGTCAGGGTGTTGTCAAAATTATTTTACCTTAACTTTCTTTAGTTATTCTATC----AGCAATACAGCAttatgtcttcataattacttgacattttatcattatgaaatagctttctgttgtaatattgcttgtttggaggtctactttttcttatattaatatagccacataagatttcttgtgcttgttgtttccttggtatacttggaaattatttaactctcaacttatctataccataatatttggcatgcatctcttataggtacttttattatatagttggacaatcagtgttttatttggagtatttaaattacatttgaaataattattgataaggttggagttaagcctactatttt s panTro2.chr4_random 3551419 679 + 6711082 ttatcccacatattttgatatagtatatttttatttgtattcagttcaatgtattttaaggtgtttcttatgatttcttccttgagctaaagggcattttaaggtgtatttaaatcttccaatagtgtagactttcctgggtagcttgttttcacccatttcgactcattttcattatggtcagaaagcatactttctatgattacagtgttttgaaacttcttaagagatattttgtggtctatagcctattgacaaatgtttcatgtgtagcataatagaacatatattcAATTTTCTTGGTCAATATCG-TTAGGTCAAGGCGTTGTCAAAATTATTTTACCTTAACTTTCTTTAGTTATTCTATC----AGCAATACAGCAttatgtcttcataattacttgacattttatcattgtgaaatagctttctgttgtaatgttgcttgtttggaggtctacttattcttatattaatatagccacataagatttcttgggcttgttgtttccttggtatacttggaaattatttaactctcaacttacctataccataatatttggcatgcatctcttataggtacttttattatatagttggacaatctgtgttttatttggagtatttaaattacatttgaaataattattgataaggttggagttaagcctactatttt i panTro2.chr4_random I 37313 C 0 s rheMac2.chr2 276305 676 + 189746636 ttatcccacacattttgatatagtatatttttatttgtattcagttcaatgtattttaaggtgtttcttatgatttcttccttgagctaaagggcattttaaggtgtatttaaatctttcaatagtgtagacttttctggacagcttgtttt-acccatttcaactcattttcattatggtcagaaagcatactttctataa----agtgttttgaaacttcttgagagatattttgtggtctatagtctactgataaatgtttcacgtgtagtataatagaacatatattctacagtcttggtcaatattgattcggtcaagctgttgtcaaaattatttcatcttaactttctttagttattctatcagttaGCAATATAGCAttatgtcttcataactacttgacattttatcattatgaaatagccttctggcgtaatattgcttgtttggagatctatgttttcttatattaatatggccacataagatttcttgtgattgttgtttctatggtatatttggaa---attttactctcaacttatctgtaccataatatttgccatgcaactcttataggtacttttattatccagctggacaatctgtgttttatttggagtgtttaaattacatttgaaataattattgataaggttggatttaagcttactatttt i rheMac2.chr2 I 1 I 526 e bosTau4.chr1 22906013 6218 + 161106243 I e loxAfr3.scaffold_13 41912617 2072 + 62548349 I e cavPor3.scaffold_34 8608335 8902 + 24440124 I e oryCun2.chr14 21979788 8974 - 163896628 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=72749.000000 s hg19.chr4_gl000194_random 151521 859 + 191469 tgctttttttttttttttttttttttttttttttttttttttttttttttgagacggagtctgtccctgtcgcccaggctggagtgcagtggcgggatctcgcctcactgcaagctctgcctcccggattcatgccattttcctgcctcagcatccggagtagctgggactacaagtgcccgccaccatgcccggctaatttttgcatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccactcgcctcggcctcccaaagtgctgggattacaggctgagccaccgcgcccagcctattttgctcttatcttctatttgttccatcattttttgctcctctgttctttctttcatgcctttttatattaactgaacaatattcagcgttccattttaattcctttattggcattttagaagaatatcttcatataatgtggtggttctctagggattgtaataaacatcctgggcttatcgcagtccacttactgttaatagtcaacgttttcatggaacataaagaaaagttgtggcaaaattgttgcgtttagtctcctgtcagagctattaatttagaatattttactctacatacgttatcaatagtactcttaattttttatttaaaccatcagttgtttgttataaaactaaaagaaaaaagccttagtttttcctgtttatgcacatgccattcctagagcttctccttacttcctgtaggtcagaatttccatctgttgttatctttctttagtctaaaaaatttccgtttgcatttcttgtatctaggtctgctaatgacaattgtttgaagcttt s panTro2.chr4_random 3552098 825 + 6711082 tgc----------------------------------tttttttttttttgagacggagtctggtcctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccgcctcccggattcacgccattttcctgcctcagcatccggagtagctgggactacaagcgcccgccgccacgcccggctaatttttgcatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtactgggattacaggctgagccaccgcgcccagcctattttgctcttatcttctatttgttccatcattttttgctcctctgttctttctttcatgccgttttatattaactgaacaatattcagcgttccattttaattcctttattgacattttagaagaatatcttcatataatgtgatggttctctagggattgtaataaacatcctgggcttatcacagtccacttactgttaatagtcaacgttttcatgtaacataaagaaaagttgtggcaaaattgttgcgtttagtctcctgtcagagctattaatttagaatattttactctacatacattatcaatagtactcttaattttttatttaaaccatcaattgtttgttataaaactaaaagaaaaaagtcttattttttcctgtttatccacatgccattcctagagcttctccttgcttcctgtaggtcagaatttccatctgttattatctttctttagtctaaaaaatttccgtttgcatttcttgtatctagatctgctaatgacaattgttcgaaccttt i panTro2.chr4_random C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e loxAfr3.scaffold_13 41912617 2072 + 62548349 I e cavPor3.scaffold_34 8608335 8902 + 24440124 I e oryCun2.chr14 21979788 8974 - 163896628 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e rheMac2.chr2 276981 526 + 189746636 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=14507.000000 s hg19.chr4_gl000194_random 152380 139 + 191469 cttttatctgaataaatctttattttctcaagaattactttttctagttatagaatttggagctgacag------ttttttttttattttgaagatgtagtttcattgctttt-------------------taaagtgtcatttctgatgacaggtagatgac s panTro2.chr4_random 3552923 140 + 6711082 cttttatctgaataaatctttcttttctcaagaattactttttctagttatagaatttggagttgacag-----tttttttttttattttgaagatgtagtttcattgctttt-------------------taaagtgtcatttctgatgacaggtcatctgt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8617237 135 + 24440124 cttttatatgaataaatc--tattTTGGAAAGAA-------------atatagaatttagagttggaaaggcattctttctttgaattttaaagtatttgctctattgattttatacggaagtcaactgaaatcaactgtcatttttact-------------- i cavPor3.scaffold_34 I 8902 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e loxAfr3.scaffold_13 41912617 2072 + 62548349 I e oryCun2.chr14 21979788 8974 - 163896628 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e rheMac2.chr2 276981 526 + 189746636 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=66504.000000 s hg19.chr4_gl000194_random 152519 196 + 191469 ctatttgtttccacgtatgtaaattattttctccctccctttagc--tactttcaagatttactctttttttgcccagtggtttgactatggtatgtctacatttggttctgtatatttttattctg--------------------------ttctttgagtttcttaaacctgtaagttgatatat--gctgacaattaggaaaacttttggtctttacttttt s rheMac2.chr2 277507 196 + 189746636 ctatttgtttccatgtatgtaaattattttctctatccctttagc--tactttcaagatttactctttttttgcccagtggtttgactatggtatgtctacatttggttctctttatttttattctg--------------------------ttcttcgagtttcttgaatctgtaagttgatatat--gctgacaattaggaaaactgttggtctttacttttt i rheMac2.chr2 I 526 C 0 s panTro2.chr4_random 3553063 196 + 6711082 ctatttgtttccacgtatgtaaattattttctccctccctttagc--tactttcaagatttgctctttttttgcccagtggtttgactatggtatgtctacatttggttctctttatttttattctg--------------------------ttctttgagtttcttaaacctgtaagttgatatat--gctgacaattaggaaaacttttggtctttacttttt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8617372 218 + 24440124 ---tttgttcctatttatataatttgttttcacttttcgatcaacaatgctttctacattcaatccgtctc--acttgtgctttgactctgatatggctacattt-gttttcttcatttttgtcctatatagagttgatgtgttttctactttttcacttattttcttgaatctataaattaatattttctctgccatttgggaaa--ttttggattatacattct i cavPor3.scaffold_34 C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e loxAfr3.scaffold_13 41912617 2072 + 62548349 I e oryCun2.chr14 21979788 8974 - 163896628 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=28050.000000 s hg19.chr4_gl000194_random 152715 86 + 191469 caaatagctttttctgtctcatttt---cttctctactctttctaggagtccaattatattagtgctagac---------------------------tggtcatatttttattat s cavPor3.scaffold_34 8617590 68 + 24440124 caatt---tttttccatctcacttt---c-------ccctttctgggtctccattta---caGGATTACAC---------------------------TAACTTCAttttt----- i cavPor3.scaffold_34 C 0 C 0 s panTro2.chr4_random 3553259 86 + 6711082 caaatagctttttctgtctcatttt---cttctctactctttctaggagtccaattatattagtgctagac---------------------------tggtcatatttttattat i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 277703 89 + 189746636 caaatagctttttctgtctcattttctccttctctactctttctagtactccaattatgttagttctatac---------------------------tggtcctatatttattat i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41914689 103 + 62548349 caactgatttttactgttttactct-------------ttttTtgagagtccaataacattactgctagactgcttgttattgtttccatagtcaccgtggccctatttttattat i loxAfr3.scaffold_13 I 2072 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e oryCun2.chr14 21979788 8974 - 163896628 I e canFam2.chr31 28136159 1890 - 42263495 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=153221.000000 s hg19.chr4_gl000194_random 152801 264 + 191469 -ttttc-tcctttgta---ttagctgtattg--ggaaattgttcttgatctgtttttaagtgcactgatagttttttctgccatctttaatttactggtatgtgcataaaatgacacttttatataagatattctgtctctcagttctaaaattt--------gt-cctattatccctttatc-------atttttacttct-ctgttgagattctccatatattctctcttatgaccatcta--ttccttaaatccttgaatatgcttataatagc-------------------------------------ttattttaaattt s rheMac2.chr2 277792 268 + 189746636 -ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttactggtatgtgcatacaatggcatttttatataagatattctgtccctcagttctaaatttt--------gt-tccattatttctttata-------gtttttgcttct-ttgtcaagattctccatatattcactcttatgaccatcta--tttcttaaatccttgaagatgcttataatagc-------------------------------------ttattttaaattt i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3553345 264 + 6711082 -ttttc-tcctttgta---ttaactgtattg--ggaaattgttcttgatctgtttttaagtgcactgatagttttttctgccatctttaatttactggtatgtgcataaaatgacacttttatataagatattctgtctctcagttctaaaattt--------gt-cctattatccctttatc-------atttttacttct-ctgttgagattctccatatattccctcttatgaccatcta--ttccttaaatccttgaatatgcttataatagc-------------------------------------ttattttaaattt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8617658 253 + 24440124 -------ccttctcta---tcctttataatg--cgatattatgcttgatatggcttcaattgta-tattattttgtcctgtcatctctgatttattgctaagccaagttagtgacactttcatatcagatactgagttcctcagttttagtttta--------gt-ttcatta----tttaga-------atttttatttctgcttctgagattccccatattttcatcctcttgaccatcta--ctcctttaatccttgatcatatttataata---------------------------------------ctgacttacactc i cavPor3.scaffold_34 C 0 C 0 s canFam2.chr31 28138049 292 - 42263495 -ttttt-tcctctgta---ttcttcattttgaaaaaaaatgttctttatc----ttcagatttattgatacttttttctatcacat--------ctggtaagcctatctagtaaatttttcatattaaatattatattcatcagtgctagcattt--------ctatttccttttttcttgtt-------gtttttattccc-ttgttgaaattccccatatattcacatgtatgaccatcta--tttctttaattcttgagtttacttatactagctaacatacaatccttgcctTCtttattttattttattttattttattttt i canFam2.chr31 I 1890 I 171 s loxAfr3.scaffold_13 41914792 281 + 62548349 tttttc-ccctctgta---tttttcatattg--gatcatttctattgctctgtcttcaagtttactgacattttcttctgtcatctctaagctactgttaagccagtcaagtaaacttttcatatcaggtattacattatttcattctagaatttcatttttggt-ctttttttttatttatatatataggtgttccttttt-ctgctgagatttcctatatgttcatatttatgcctatctatgttcttttaatccttgaacatatttataatagc-------------------------------------tgatttaaagtt- i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e oryCun2.chr14 21979788 8974 - 163896628 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=59777.000000 s hg19.chr4_gl000194_random 153065 92 + 191469 ctcatcttctaattccagcatgtgggccatttcaatgtcttaatccattgtttactttttttg---ttatgtgtcatattttcctg-------gttctatgt s rheMac2.chr2 278060 91 + 189746636 cttatcttctaatcccagcatgtgggctatttcaatgtcttaatccattgtttacttttttc----ttataaattatattttcctg-------gttctatgt i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3553609 92 + 6711082 cttatcttctaattccagcacgtgggccatttcaatgtcttaatccattgtttactttttttg---ttatgtgtcatattttcctg-------gttctatgt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8617911 84 + 24440124 tttggcttctaattccaacacatggac-atctcaagattcta------tatgtgcttttgttt---ttctgtgtcatgttttcat--------tttttatgt i cavPor3.scaffold_34 C 0 C 0 s canFam2.chr31 28138512 97 - 42263495 cttgccttctaattcccaaat-taggccacctcaacgtgtctttccattgtctacttttttc----ctatgtgttatattttcctgtatttttttttaatgc i canFam2.chr31 I 171 C 0 s loxAfr3.scaffold_13 41915073 100 + 62548349 cttgtctcctaattcaaacatctaggccatctcgatgtctgtttctattgcctacttttttcttgactgtgggtcatattttcttgtttct--tttttatgt i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e oryCun2.chr14 21979788 8974 - 163896628 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=162112.000000 s hg19.chr4_gl000194_random 153157 243 + 191469 ctaggca-ggttaaattatatgttagattatgtgtatgatatt--------------------------------------------------ttgtagaga-------taggctcttttattttcctttgaagagtgactcttttctaacattagtcttctttctgtagtcaaacaccaaactt-tcactcc----------------------------tgagctatatgca----------------------------------------------------------------atggttgaaatctctgctctgtactagcaatttagctgttgttttttgctggat-tctatggagtctctttttatgaatgtgaaatgtagcagccat s rheMac2.chr2 278151 243 + 189746636 ctaggca-tgttaaattatatgttagattatgtggatgatatt--------------------------------------------------ttgtagaga-------taggttcttttattttcctttgaagagtgACTCTGTTCTAACATTAGTCTTCTTTCTGTAGTCAAACACCAAATTT-CCACTCC----------------------------TGAGCTACATGCA----------------------------------------------------------------GTGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGTTGTTTTCCGCTGGAT-TCTATGGAGTCTCTTTTTATGAATGTGCAATGTAGCAGCCAT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3553701 243 + 6711082 ctaggcc-ggttaaattatatgttagattatgtgtatgatatt--------------------------------------------------ttgtagaga-------taggctcttttattttcctttgaagagtgACTCTTTTCTAACATTAGTCTTCATTCTGTAGTCAAACACCAAACTT-TCACTCC----------------------------TGAGCTATATGCA----------------------------------------------------------------ATGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGTTGTTTTCTGCTGGAT-TCTATGGAGTCTCTTTTTATGAATGTGAAATGTAGCAGCCAT i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8617995 246 + 24440124 ctagcca-ttgcatataatttgctgaactagtgg-agaataat--------------------------------------------------ttgtagagacactgactgggtcttgttatttttctttga--agtgacttttctGTAACATTATTTATATTTTTGTATACAAACACCAAATTA-TCACACC----------------------------TCTGTGGTGTGCA----------------------------------------------------------------GAAGCTGAAATTTCTACCCTTTTCTAGTTCTCCTGTCATTGCTTTCTGTAGGAG-CATCTCAAGTCTC-TTATATTCATAAGTAATTTAGAGACTAC i cavPor3.scaffold_34 C 0 I 3 s oryCun2.chr14 21988762 241 - 163896628 CTAGCCA-TCTTAAATTGTCTACAAAATTACATG-ATGATGTC--------------------------------------------------TTATAGAAACTCTGA------GTTGTTATTTTCCTTTGACGAGTGACTCTTTTCTGACGTTATTCATCTTTTTGTACTGAAATATCAAACTT-TCACTTC----------------------------TTTGTGGTGTGCT----------------------------------------------------------------GTCAATGAAATATCTGTTCGTTT-TAGTCTTCCAG-Ctttgttttctgctggagacccatggagtctc-ttcagtacctgtgcagtttagcaaccgt i oryCun2.chr14 I 8974 C 0 s canFam2.chr31 28138609 336 - 42263495 atagctg-tttttaattatatactggatttgggg-ctgatata--------------------------------------------------ttgtagagactc----tgagtcctgttatttttctttgaggagtgact-ttttctagtattactcatctatctgtactcaaacaccaaactTCTCACTTCATGTGAGATGGAATGGAATTTGTTTGAATTAGTGAGatttaaaaaattattttaaatCCTGATTATAAAAATCATAGTAACTCATTGTAGTAACAGTGCTGAATGGTGGATGAAATCTATGCTCTATGCCTGTCCCtcagatattgctttctgctggga-tctatggagtatc-ctcaatgcatgtgcaacttaatagtcac i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41915173 293 + 62548349 ctaataattttttaattgtacactgggttttgtgcatTATActctagggttgctatgagtcagaatctactcgatggccttaggcttggGACATTGTAGACACTC----TAGATTGTTTTGTTTTTTTTTTTTAAGTGATTCTTTTCTAGCA-GGTTCCTTTTTTTATACTCAAACACTAACCTT-TTACTTC----------------------------ACTGTTGTGTGCA----------------------------------------------------------------GTAGTTGAAACT--TGCTCTATTCTAGTCCTCAAGCTGTTGCTTTCTGCTAGAC-ACCAGGGCGTTAC-TTCTATACCTGTGCAATTCAGGAGTCAC i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=149317.000000 s hg19.chr4_gl000194_random 153400 218 + 191469 catatatctgaatgaagtttaagtgctgattttagattt---ttactct---gtgacattctcct-ctgtgactttc----AGTTGTGTGAGATTTCCTCCCATGTCATTCAAATTTCCCAATTCTTCTTTTCTGTCAGCCTGGAACTCTGTACTCTTATTCCTCAAGCTAGTA-AAACTCACCGCTTTACTCTTAGACATCTAATTTTGCACAGACTGGGAAGTGTCAT s rheMac2.chr2 278394 218 + 189746636 CATATATCTGAATGAAGTTTAAGTGCTGATTTTAGATTT---TTACTCA---GTGACAGTCTCCT-CTGTGACTTTC----CCTTGTGTGAAATTTCCTCCCATGTCACTCAAATTTCCCAGTTCTTCTTTTGTGTCAGCTTGGAAGTCTGTACTCTTATTCCTCAAACCAGTA-AAACTCACCGCTTTACTTGTAGACATCCAATTTTGCACAGCCCGGGGAGTGTCAT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3553944 218 + 6711082 CATATATCTGAATGATGTTTAAGTGCTGATTTTAGATTT---TTACTCT---GTGATATTCTCCT-CTGTGACTTTC----AGTTGTGTGAGATTTCCTCCCATGTCATTCAAATTTCCCAGTTCTTCTTTTCTGTCAGCCTGGAACTCTGTACTCTTATTCCTCAAGCTAGTA-AAACTCACCGCTTTCCTCTTAGACATCTAATTTTGCACAGACTGGGAAGTGTCAG i panTro2.chr4_random C 0 C 0 s mm9.chr16 22795774 209 - 98319150 CGTATTTCCAGATGGAGTTTACCT-------TTGGTTCT---TGGCTCTACTCTGATTCATTCCTGGTGTGATATGC----ACTTCCATTGGATTCCATCCCATTTCTCTC-CATTCCTCAGATTGGTAGTTCTGTCTACTCAA---TCTCTGCTCTAATTTCTTGAGCTTGTA-AGATGTCCTGTCTCATCTGAAGACTTCTCGTGTCTCCCAGA--ATGGAGTGTCAT i mm9.chr16 N 0 C 0 s rn4.chr11 73442428 205 - 87759784 ---ATTTCCAGATGTGGTTTATGT-------TTGGTTCT---TGGCTCTACGCTGAGTCACTCCC-CTGTGATATGC----ACTCCCACTGAATTCCATCCCATTTTGCTC-CACTCCTCAGAGGGCTGGTTCTATATACTCAG---TCTCTGCTCTAATCTTTTGAGCTTGTA-AGTTGTCCTGTCTCTTCAGAAGACTTCTCGTGTCTCCTGGA--ATGGTGTGTCGT i rn4.chr11 N 0 C 0 s cavPor3.scaffold_34 8618244 195 + 24440124 TACATATCCAA--GGAGTTTATATGCAG-CATTAGATCT---TTAATCT-TTATGATACTCTCCT-TTGTGATATTT-----TTTGTGTTGGAGTCTCTTCTACATCTCTC-AATTTCCAAGTTG------TCTGTCTAC-AAC---TTTGTACTATGACTCTTCAAGCAAGTA-GAATTTGCTGATTTAGTTGCACAGTGCAATTAT----------GCGAAGTTTCAT i cavPor3.scaffold_34 I 3 C 0 s oryCun2.chr14 21989003 190 - 163896628 ccaccatctcactggggtttacat-------acaggtttcagtgactct-cggtga--ctttcac-ctatgagattc----cttcccactcaagtt--tccaactcttct-------------------attctatctgcccagatttttgtactcttattcttcaagctagta-aaaTTTACAGCTTTATTCACCAACATCCAATTGTACATAG---ACTGAGTATCAA i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28138945 220 - 42263495 cgta-atctggatggagtttatatgaatatttcagatct---tcaccat-ctgtgacattttctt-ctatgactttcacttacttgtatgggattctctcccactccactc-aatttcccagttcttctgttttgttagcttggaactctgtgctcatactcctcacactggaataaaattgctgctccagttgtagccatccagttcttcaaga---ctgcagtgtcat i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41915466 197 + 62548349 --------CAAATG-------TTTGCCAATTGTTGGGCT---CTACTCT---GTGACTTtcccct-ctgtgactttc----acttttatgtaattccctcctgcccccctc-aattttccagctc-----ttctgtcagcctggaactctgtactcacatccttcaagctggta-aaatttgctgtttcagtcatagccattccactctgcgcagactgagaagtgctct i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e equCab2.chr26 28491854 210 - 41866177 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=100671.000000 s hg19.chr4_gl000194_random 153618 91 + 191469 CAGGTGTGAAGTTACATTGATGCAAATTTAAATCATTGCA-ATTTTCT--TTATTCAATGGTCAAATA-CTTCATCAGTGGTTGAATATTCTACT s rheMac2.chr2 278612 91 + 189746636 CAGGTGTAAAGTTGCATTAATGCAAATTTAAATCATTGCA-ATTTTCT--TTATTCAATGGTCAAATA-CTTCATCAGTGGTTGAATATTCTACT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554162 91 + 6711082 CAGGTGTGAAGTTGCATTGATGCAAATTTAAATCATTGCA-ATTTTCT--TTATTCAATGGTCAAATA-CTTCATCATTAGTGGAGTATTCTACT i panTro2.chr4_random C 0 C 0 s mm9.chr16 22795983 85 - 98319150 CTGGTGCAAAGTTGCATCCAAAC--ACTGAAACCAGTTCC-ATAAGTT--TCCTTCAA-----AGATATCTCCATCATGCCTCAGACACTCTGAC i mm9.chr16 C 0 C 0 s rn4.chr11 73442633 88 - 87759784 CAGGTACAGAGTTGTATCTAGGCAAACTGAAACCAATTCCAAGAAGTT--TCCTTCAA-----AGATGTGTCTGTCATGCCTCAGACACTCTGAC i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8618439 91 + 24440124 CTGGTATGAAATTGCATCAGCGTGACCTTAAACCACTGTA-ATCATTT--TCTTTCAATGATCAGATA-GTCTGTCAGTGATCAAATATCCTAAC i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21989193 85 - 163896628 CAGATAGAAAACTTC--TAAAGCATACTTAAACCA------GGAACTTCATCTTTCAGTGGT-TAATG-CTCTCTCATTGACCAAATAGTCTATT i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28139165 90 - 42263495 caggtagaaagctgcagtaaagcacactt-aatcagagca-gttatct--tcctttgatggtcaagta-ttcagtcattggatgaatattctgat i canFam2.chr31 C 0 C 0 s equCab2.chr26 28492064 91 - 41866177 CAGGTGTAAAGCTGTATGAACGCAAGCTTAAACCAATGCA-GTTATCT--TCTTTCGATGGTCGAATA-CTCTGTCAATGGTCAAATACTTTGAT i equCab2.chr26 I 210 C 0 s loxAfr3.scaffold_13 41915663 71 + 62548349 aaggtgtaaagctatgtcaaggcaaacct-aaccagtgta-gttttct--tctttcagttgtcaaata-ccctgac------------------- i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22906013 6218 + 161106243 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=17846.000000 s hg19.chr4_gl000194_random 153709 55 + 191469 ATTT---CTGCCTGTTTTCTGTTT--CTCATTACCATCAAATGTG----TATTTAA---TTTTTTT-T s rheMac2.chr2 278703 53 + 189746636 ATTT---CTTCCTATTTTCTGTTT--CTCATTACCATCaaatata----tatata-----tatttt-t i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554253 55 + 6711082 ATTT---CTGCCTGTTTTCTGTTT--CTCATTACCATCAAATGTG----TATTTAA---TTTTTTT-T i panTro2.chr4_random C 0 C 0 s mm9.chr16 22796068 53 - 98319150 ATTC----TGCCTTCTAACAGTT---GCTGGTACTACGTAATGTG----GTTTCTA----CTTTTTAA i mm9.chr16 C 0 C 0 s rn4.chr11 73442721 52 - 87759784 TTTC----TGCCTGCTAACTGTT---GCTGGTGTTATTAAATGTG----GATTTTA----CTTTTT-A i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8618530 54 + 24440124 TTTT---ATGCCTATTTTCTGTTC--TCTACTACCATGAAATGCA----TTTTTAA----AAAAGT-T i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21989278 58 - 163896628 TTTTTTGGTGGTCATTTTCTGTT---TTCAGTACCATCAAATGTA----TTTCTAA--AGCAATTT-T i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22912231 57 + 161106243 ATCT---CTACCTATTTTCTTTTTCATTCTGTTGCATCAAATGTG---TTTTTTAA---ATGGTTT-- i bosTau4.chr1 I 6218 I 4 s equCab2.chr26 28492155 50 - 41866177 ATTT---CTGACTGTTTT----------CTTTGTCATCAAATGTGGGATTTTTTTA---ATGTTTT-- i equCab2.chr26 C 0 I 4 s canFam2.chr31 28139255 50 - 42263495 -ttt---ctgcctatttttc------ccccataacatcaaatatgtgtgtatttta------tttt-- i canFam2.chr31 C 0 I 225 s loxAfr3.scaffold_13 41915734 58 + 62548349 actt---ctgcctgttttctgttg--ttcagtatcttcaaatgtg---ttatttaatatatcatgt-- i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=309621.000000 s hg19.chr4_gl000194_random 153764 305 + 191469 AGAGTTAATAGTTT-----TTTTCCCTGCATTTG----AGT----TAGACCTGAGCTACTACCACATT-TTG---TAATTCAAACTTCTTGTCTAACAATGTTT-TA---------AAAAACTCTTT-ATTTGGAGGGAATTCTCAAATTTCTAAATAC-TCTACAAACATTAGGAT-------CAGGGCTCACATTCCCAGTTTCCCTTGTAGTCAGATGTGCATATCGAACATGGCCTCAG-CTAATGAAGCATACCCACAT-A-TTTGAAAGTAAGAAAAGTGTT--AAGAGGAACTGTA----GATATCATTTTAGTTGATTTAAGGATGG--AAAATAAATAA--CCAA s rheMac2.chr2 278756 307 + 189746636 aGAGTTTATGTTTT-----TTTCCTCTGCATTTG----AGT----TAGACATGAGCTACTACCACGTT-TTG---TAATTCAAACAT-TTGTCTAACAATGTTTAAA---------AAAAACTCTTT-ATTTGGAGGGAATTCTCAAATTTCTAAATAC-TCTGCGAACATTAGGAT-------CAGGGCTCAAATTCCCAGGTTTCCTTGTAACCGGATGTGCATATGAAACATGGCCTCAG-CTAATTAAGCATACCGACAT-A-TTTGAAAGTAAGAAAAGTGTT--AAGATGCACCGTA----GAGATCATTTTAGTGGATGTGAGGATGGAAAAAAAAAATAA--CCAG i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554308 303 + 6711082 AGAGTTAATAG-TT-----TTTTCCCTGCATTTG----AGT----TAGACCTGAGCTACTACCACATT-TTG---TAATTCAAACTTTTTGTCTAACAATGTTT-TA---------AAAAACTCTTT-ATTTGGAGGGAATTCTCAAATTTCTAAATAC-TCTACAAACATTAGGAT-------CAGGGCTCACATTCCCAGTTTCCCTTGTAGCCAGATGTGCATATGGAACATGGCCTCAG-CTAATGAAGCATACCCACAT-A-TTTGAAAGTAAGAAAAGTGTT--AAGAGGAACTGTA----GATATCATTTTAG-TGATGCAAGGATGG--AAAAAAAATAA--CCAA i panTro2.chr4_random C 0 C 0 s mm9.chr16 22796121 294 - 98319150 TGAGGTCTTGGTTT-----TTGCCTTTGAAATCA----A------TGAATTTGGACTACTCTGTCAAT-TTA---TGATTGAAACCC-CA--TTTATAAAATTT-AG-----GGGAAAAAAATCTCT-ATATTTGGAGAC--TTCCAAATTCTGAATGTGTCTGAAATATCTAGGAC-------AAAGGAATGCATTCTTAATTTTCCTCATAGCTAAGTATGCATGTGAAATGTAAGCTCTG-CTCCTCAG--ATGTTCCTACAA-TTGTGGAAGAATTAAGGT-----------TATCATAGACAGATTCCATTTTAGCTGATGGAAGTGGG-----AGAGATTAA--CCAA i mm9.chr16 C 0 C 0 s rn4.chr11 73442773 308 - 87759784 TGAGCTCCTTGTTT-----TTGCTTTTGAAATAA----A------TGAGTGTGAATTACTATGACAGT-TTA---TGATTGAAACTC-TA--TTTGTAAAATTT-AGGGGGCGGGGGAAATCTCTTT-ATGTCTGGAGACTTTTCCAAATTCTGAATCTGTCTGAAGTATCTAGGAT-------AAAGGAATGCATTTTTAATTTTCCTCACAGGCAAATATGCCTATGAAACATCAGCTCAG-CTACTCAG---TGAACCTAC-A-TTTTGAAAGAATGAAGGTCAC--CACAGACATCATAGGCAGATACCATTTTAGGTCATGAAAGTGGG-----AGAGATAAA--CCAA i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8618584 293 + 24440124 TAAGTTTGTAATTT-----TTTCACTTGAATTCA----GGTTTATTAGATATAAGCTACTACTGCATT-TTG----AATTGAAAATG-TA----TATCAACTTT-TG--------AAAATCTTTTCT-ATAGTTAGAGAATTTCCCAAGTTTTTATTTCCTCTGAAAC-TCTAGAAT-------TAA-GATCAAATCTCTAGTTT--CTCATAACTAGAAAAGTGTACAGTCTGTC--CACAG-ATAATGAGTCATATGCACAT-A-TTTGAATACAAATATAATGAT--AAAAAGTATTATATTTTGTTCTCATTTTAGTTGATGCAA--------------ATAAACTCCAA i cavPor3.scaffold_34 C 0 I 159 s oryCun2.chr14 21989336 303 - 163896628 TTAGCTTATCATTTTTCAATTACTTTTGGATTAG----G------TAAATGTTACCTTTTTTTTTCTT-TTTTAGTAATTGAAACTT-TTGTCTAGTACAATTT-TA---------AAAATCTTCCT-ATATACATGGACCTTTCAAAATTCAGAATCTCTCTGCAAACATTAGAAC-------AGG-GTTCATATTCCTTATTTCTCTTATAGACAACTGTGCTCATTAGAC-----CATTGTCTAATCTA---------TAC-A-CTTGAAAATAGAAAAGTGACT--TTAAAAAAGTGCTGCTTGTGTGTATCTTAGCTGATACAAGGAGGTAAAAAAATAACAA--CCAC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22912292 305 + 161106243 AGAGTTTATCA-TT-----TTTTATCTGCATTTGAGTTAGT----CAGATATGAGCTACTACCACATCATTT---TAATTTAAACATTTGAAC------ATTTT-GA---------ACAATTTTTCTAAAATTTAAAAAAGTTTCCAAGTTGTCAATCCTTCTGTAAA---TATAAT-------CAAGGTTTGAATTACCAACATCCCTTGGAGGCAGATGTGCACATGAAACTTAGGCTCAG-CTAATCAGATATGCCCATAC-G-TTTGAAAGTAAGAAAAGTGAT--AAAAGATATTGTTCATAGACAATGTTTTACTTGATACCTGGAAT---GACAACAATAA--CCAA i bosTau4.chr1 I 4 C 0 s canFam2.chr31 28139530 310 - 42263495 AGAGTTTATAA-TT-----TTTCCTCTGCATTTGGGTTAGT----CAGATGTGAGCTGCTAGCACATCATTG---TAATGTAAActttctgtctctcatctttt-ga---------aaaacctctct-ctatttaagaaatttcccaagctgtgaattcctctgtaaa---atgaag-------caaggctcaaatcctctatttcctttgtaggcagatgtgcacttgaatcttaggttcag-ctaatcagacatactcatgc-A-TTTGAAAGTATGAAAAGTGAT--AAGAGGCACTCTTTATAGATATCATTTTAATTGATGCAGGCAAG---AATAACAATAA--CCAA i canFam2.chr31 I 225 C 0 s equCab2.chr26 28492209 314 - 41866177 AGCGTTTATAA-CT-----TTTCATCTGCATCTG----AGT----TAGATACAAGTTACTACCACATCATTG---TAATTTAAACTATTTGTCTATTTTCTttt-ga---------aaaacctctct-agatttgaggacttttccaagttgtaaatgcctctgtaaa---caggagtaaaaatcagggctcaaattcccaatttcccttggaggcagatgtgtatatgaaacttaggctcag-ctaatcagatatacccacac-attttgaaagtgagaaaagtgat--aaaaggCACTATCTGTAGATATCATTTTAGTCGATGCAGAGAAG---AATAGCAATAA--GTGA i equCab2.chr26 I 4 C 0 s loxAfr3.scaffold_13 41915792 305 + 62548349 agagtttataa--t-----ttttttttacatacg----ggttactcagatatgaactactagtgtatcactg---taattggaactctgTgtcattcacctttt-ga---------aaaacctct---atatttggggaaatttcaaagttccgaatccctcttcaaacactagaat-------cagag--------cccaatttcacttgtagctagatacacatagataatctaggctcag-ataatcagacatactcacAT-A-CTTAGAAATATGAAACATGATACAATAGGCACTGTTTGTAGATATCAGATTAGGTGCTCCAGGTAAGC--ACAAAAAATAA--CCAA i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=75851.000000 s hg19.chr4_gl000194_random 154069 91 + 191469 CTTTCACTGGTGAACTTTGTCTTCAATCATTGTTTTCCCGTGGGTAAGCGGCTAATTTTCTGGCCTAGAGGTGAAAT--------------------TGGTGTGTTGGTAA s rheMac2.chr2 279063 88 + 189746636 CTTTCACTGGTGAACTTTATCTTCA---GTTGTTTTCCTGTAGATAAGTGGCTAATTTTCTGGCGTAGAGGTGGAAT--------------------TGGTGTGTTGGTAA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554611 91 + 6711082 CTTTCACTGGTGAACTTTGTCTTCAATCATTGTTTTCTCGTGGGTAACTGGCTAATTTTCTGGCCTAGAGGTGGCAT--------------------TGGTGTTTTGGTAA i panTro2.chr4_random C 0 C 0 s rn4.chr11 73443081 60 - 87759784 GTGTTGCTGGTAATTTCTGTTTTT---------TTTATACTGAGTAGGCAGTTAAGTTTATAGTCTA------------------------------------------AA i rn4.chr11 C 0 C 0 s mm9.chr16 22796415 58 - 98319150 GTTTTGCTGGTAATTTTTG--TTC---------TTTACACTGAGTAGACAGTTAAGTTCATATTAGA------------------------------------------AA i mm9.chr16 C 0 C 0 s oryCun2.chr14 21989639 86 - 163896628 ATTTCACTGGTGAATTCTC--TTCAGT-GATGGTTTTCAGTGGGTAAAAAGTTAGTTTTATAGTTTGGAAATATAA----------------------GACACAACAGTAA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22912597 83 + 161106243 CTTTCACCCAAGAATTCTGTCTTCAGTGA--------CTGTGAACAAGAGGTTAACTTCATGGTACAGAATTGAAAT--------------------TGTTTTTGTGGTAA i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28139840 91 - 42263495 TTTTTACCAGATAATTGTGTCCTCAGTGGTTGTTTTCCTGTGGGTAAGTGGTTAACCTCATGGTATAGAAAGAGAAT--------------------TGGTGTGGTGGTAA i canFam2.chr31 C 0 C 0 s equCab2.chr26 28492523 90 - 41866177 CTTTCTCTA-AGAATGCTGTCTTCAGTGATTGTTTTCCTGCGGATAAGTGGTGAACTTCGTGGTATAAAAATGGAAT--------------------TGGTGTGGTGGTAA i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41916097 111 + 62548349 CTTTTACTTGTGGATTCTGTCTGCAATGATGATTTTCCTGTGGGTTAGTTGTTACTTTTATGGGGTAGAAATGGGATGGATTCTGATggagccctggtggtacagtggtta i loxAfr3.scaffold_13 C 0 I 105 e cavPor3.scaffold_34 8618877 159 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=-9202.000000 s hg19.chr4_gl000194_random 154160 90 + 191469 GAATTGA-TT-TA------------------------ATGATAACCTGCTT------TTGT-CTTTTT-AAAAATTGTGAATC--CACCATTGTTTCTGGTCCTGTTTTATAC----------------------------------------TTATGCAGTGTAT s rheMac2.chr2 279151 90 + 189746636 CAATTGA-TT-TG------------------------ATGATAACGTGCTT------TTGT-CTTTTT-AAAAATTGCTAATC--CACCATTGTTTCTGGTCCTGTTTTATAC----------------------------------------TTATGCAGTGTAT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554702 90 + 6711082 CAATTGA-TT-TG------------------------ATGATAACCTGCTT------TTGT-CTTTTT-AAAAATTGCTAATC--CACCATTGTTTCTGGTCCTGTTTTATAT----------------------------------------TTATGCAGTGTAT i panTro2.chr4_random C 0 C 0 s rn4.chr11 73443141 81 - 87759784 TGATTGC----------------------------------TATTCTAGTT------TTAT-CTTTAAAAAAAACTGTGAACTACATTCATTTTTACTGGTC----TTCCTAC----------------------------------------CTATACAATGTAT i rn4.chr11 C 0 C 0 s mm9.chr16 22796473 82 - 98319150 CGATTGC----------------------------------TATTCTAATT------TTATCCTTTTTAAAAAACTGTGAACTACATTCATTTTTACTGGTC----TTCCTAC----------------------------------------CTATGCAATGTAT i mm9.chr16 C 0 C 0 s oryCun2.chr14 21989725 70 - 163896628 TAATTGTTTC-TG------------------------ATGATATTCTGACT------TTTT-CTTTTTTGTAAATT-CGAATT--CTCCTTTGTTCCCAGTCATG------------------------------------------------------------- i oryCun2.chr14 C 0 I 3336 s bosTau4.chr1 22912680 59 + 161106243 TGATTGA-TTTTG------------------------GTAACATTCTGTTT------TTTT-CTTTTTTGTA---T------------------------CCCTGCTACTTAT------------------------------------------------TATAT i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28139931 88 - 42263495 GGCATGA-TTCTG------------------------TTAATATTCTAGTTTGTCTTTTTT-TTTTTTTTTA---TGTTGATT--CCCCT---TTTTACGTCCTGCAACCTCTAC--------------------------------------CT------TGTAT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28492613 132 - 41866177 TGATTGA-TT-GA------------------------TAAGTATTCTGGGT--TTTGTCTT-TTTTTTTTTA---TGCTAACT--CACCTTTGTTTCTTGTCCTGCTACCTATACAGTATATTATACATTATACAGTATATAATTATTATATGCTATATGGTATAT i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41916313 110 + 62548349 gaatcaa-ct-tgacaacaGCATGTGGTGGTGGGTGTATGATAGCCTAGTT------TTGT-CTTTTTTACTAA-TGCTAACT--CACCTGTGTCTCTGGTTCTGCTACCTAT------------------------------------------ACATCATGT-- i loxAfr3.scaffold_13 I 105 C 0 e cavPor3.scaffold_34 8618877 159 + 24440124 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=22104.000000 s hg19.chr4_gl000194_random 154250 52 + 191469 AATCT----CTCATGCA--AAATTTAGTT------CTTT--------GTTTCTCAGCTTAAACTGGATTTTG s rheMac2.chr2 279241 56 + 189746636 AACCT----CTCATGTA--AAATTTAGTTCT--TCCTTT--------GTTTCTCAGCTTAAACTGGCTTTTG i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554792 52 + 6711082 AATGT----CTCATGCA--AAATTTAGTT------CTTT--------GTTTCTCAGCTTAAACTGAATTTTG i panTro2.chr4_random C 0 C 0 s rn4.chr11 73443222 38 - 87759784 GCTCT----ATCATGCAT-GATTTTGTTC------CTCC-----------------------TTGGATTTTA i rn4.chr11 C 0 C 0 s mm9.chr16 22796555 61 - 98319150 TCGCT----GTCATATAT-TACTTTGCTC------CTCTTTTTAAAAAATATCTGCCTTAAGTTTGATTTTG i mm9.chr16 C 0 C 0 s oryCun2.chr14 21993131 43 - 163896628 --AAT----CTCATATACAAAATTTGCTT-----------------------CCAGCTTAAGTTGAATTTTG i oryCun2.chr14 I 3336 C 0 s cavPor3.scaffold_34 8619036 29 + 24440124 -----------------------------------CTTT--------GTTATCTAGGTTAAGTTAGGATTTA i cavPor3.scaffold_34 I 159 C 0 s bosTau4.chr1 22912739 62 + 161106243 AATCAATCCCTCACATA--TGATTCGATTCTAGCTTTTT--------GTTTCCCAGTTTACACTAGATATTT i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28140019 58 - 42263495 AATCT----CTCCTATA--CAATTTGATTCTGGCTTTTT--------GTTTCCTGGCATAAATTGGATTTTT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28492745 54 - 41866177 AATCT-------CCATA--TACTTTGATACTGGC-TTTT--------GTTTCCCAGATTAAACTGGATTTTG i equCab2.chr26 C 0 I 264 s loxAfr3.scaffold_13 41916423 58 + 62548349 ACTCT----CCTACAAA--CAATTTGGTTAGGGTTTTTT--------GTATCTCAGGTTAAACTGGATTTTC i loxAfr3.scaffold_13 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=2016127.000000 s hg19.chr4_gl000194_random 154302 906 + 191469 ATGAGCAG--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGACAAAAATAACAAGAAGGA----ATTAAAGAAATTTGTTTGTCATC-TTG-TAACA----TTAAATAAATGAAAC--TGAAAATTCAACAATTCTGTTTCATAAAAAAG---TAGAAAGTTTC----------------------------TACTGTTTTTCATTATTTTCAAAGCTATATCATTAAATGAAATTTCTGCCTCATGGAAGGTTTTTAGAACT---ATGTAATA----ATACCATACAGACCATTAGGAGAGAAATGAATA-AAGACTGAAAGAAGTAAGCACTGTGTGGTAACATAGAT-GGTGCACAGTTGTGTGTGTGGAGCCCTAATACATTTGACCATGGAATTTATACAATAAATGTCAGTTTCCTGTGAACCTGCTAATTAATATGACTTTCGCAGACCTTTCCTTAACCTAAACTGTTTAGGTTTCCTGTCGACAGACTGCATGTATTCTCACCTTTAACCTTTCCATAATCTTCCCTAATTACAGATGTCATTGGTTCTTAATAGCAAAAGAACAGCAGTAGCTTATAAAGTTATAT--T----------ATTT--GTTTTTT--ACTAATA-TGTGA--------------------AGTGA-TTTTGTCT-TTCATTTCACCTCTAGAGCTAATTATGTCTTCTAGGTTAACAAAAATTCCAGATCATACCATCATTAGTTTAAACTTTACAATG-AAATC---ATTATTTCCATTTATTACTAGCCTGCATTATAGCAATGTTTAGCTAATGAATTCTCAAAATATTTCTTGAAAGGTGA-AAGAGTACCTCAAGTAAATGATGTAATTTATTTATTTATCAGAATTTTAAATT--AAGTGTTCTGTT-TAATCTCA-AAGGGGTACCAATGAAGTCAGGGCATAAGGACTC--TGGTTAATAAAACGGTAAGAATTAAAAA-AGATTA--TTACA-TTTT s rheMac2.chr2 279297 835 + 189746636 ATGAGCAG--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGAGCAAAATAACAACAAGAGGCT-ATTAAAGAAATAAGTTTGTCATC-TTG-TAACA----TTACATAAATAAAACTTTGAAAATTCAACAATTCTGTTTTATAACAAAA---TAGAAAGTTTC----------------------------TACTGTTTTTCATTATTTTCAAAGCTATATCATTAAGTGAAATTTCTGCCTCATGGAAGATTTTTAGAACT---ATGTAATA----ATAACATACAGATCATTAGGAGAGAAATGAATA-AAGACTGAAAGAAGTAAGCACTGTGTGGTAATGTAGAT-GGTGCACAGTTGTGTGCATGGAGCTCTAATACATTTTACCATGGAATTTATACAATAAATGTTAGTTTCCTGTGAACCTGCTAATTAATATGACTTTCACAGACATTTCATTAACCTAAACAGTTTAGGTTTCCAGTAGATAGACTGCATGTATTCTCATCTTTAACCTTTC------------------------------------------------------------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNAGTGA-TTTTGTCT-TTCATTTCACCTCTAGAGCTAATTATGTA-TCTAGGTTTACAAAAATTCCAGATCACACCATCATTAGTTTAAACTTTACAATG-AACTC---ATTATTCCCATTTATTACTAGCCTGCATTATAGCAATATTTAGCTAATGGATTCTCAAAATATTTCTTGAAAGGTGA-AAGAGTACTTCAAGTAAATGGTGTAATTAATTTATTTATCAGAATTTTAAATT--AAGTGTTCTTTT-TAATCTCA-AAGGGATACCAGTGAAGTTAGGGTGTAAGGACTCCCTGGTTAATAAAATGGCAAGAATTAAAAA-GGATTA--TTATA-TTTT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3554844 909 + 6711082 ATGAGCAG--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGACAAAAATAACAAGAAGGA----ATTAAAGAAATATATTTGTCCTC-TTG-TAACA----TTAAATAAATGAAAC--TGAAAATTCAATAATTCTGCTTCATAAAAAAA---TAGAAAGTTTC----------------------------TACTGTTTTTCATTATTTTTGAAGCTGTATCATTAAATGAAATTTCTGCCTTATGGAAGGTTTTTAGAACT---ATGTAATA----ATACCATACAGACCATTAGGAGAGAAATGAATA-AAGACTGAAAGAAGTAAGCACTGTGTGGTAACATAGAT-GGCGCACAGTTCTGTGCGTGGAGCCCTAATACATTTGACCATGGAATTTATACAATAAATGTTAGTTTCCTGTGAACCTGCTAATTAATATGACTTTTGCAGACATTTCCTTAACCTAAACAGTTTGGGTTTCCTGTATATAGACTGCATGTATTCTCACCTTTAACCTTTCCATAATCTTCCCTAATTACAGATGTCATTGATTCTTAATAGCAAAAGAACAGCAGTAGCTTATAAAGTTATAT--T----------ATTT--GTTTTTT--ACTAATA-TGTGA--------------------AGTGA-TTTTGTCT-TTCATTTCACCTCTAGAGCTAATTATGTCTTCTAGGTTAACAAAAATTCCAGTTCATACCATCATTAGTTTAAACTTTACAATG-AAATC---ATTATTTCCATTTATTACTAGCCTGCATTATAGCAATATTTAGCTAATGAATTCTCAAAATATTTCTTGAAAGGTGA-AAGAGTACATCAAGTAAATGGTGTAATTAATTTATTTATCAGAATTTTAAATT--AATTGTTCTGTT-TAATCTCA-AAGGGGTACCAATGAAGTCAGGGCATAAGGACTCCGTGGTTAATAAAATGGCAAGAATTAAAAA-GGATTA--TTACATTTTT i panTro2.chr4_random C 0 C 0 s rn4.chr11 73443260 857 - 87759784 GTGGTCAGGGTTCTCGCTTTTCTATGAAAAAAAATGTTTGGAC---------AACAAAATGACAGCAAAGCAAAAGGTGAGGCAATATGCCTGCCATCTTTG-TAGTAAGCTGCATCTTCAT---GTTTTGAACATTTAAAAATTATCTTTTTCAACAA-----CGAGACGATTC----------------------------TACTATTTTCCAATAATCATAGGGCTACAGGACTAGGTGGCACTTCTGTCTGTTGAAAGATTTCC---AGG---ATACACTACCTCATAACACAGAGGTCACTACTCAGACAGTAGACAAAAGACGGAATGATCTGTGTTCTGTATACTG--------------------------------------------------TGGCATTAATAAAGTAAGCACTGGAGTCCTGGGAACTTGCTAATTAATATGGCTTTCATAGACATTTCATTACCCTAAATGGCTTTGGTGTCCTGTAGATAGACTGCATGTGTTCTCATCTTTAACCTTTCTGTGATGTTCCATAATTGCATATTTCATTGA-TTTTAATAGCAAAAG------AATAGCTTATAAAGTTATCTTTC----------AATTTGATTTTTC--CCTAACA-CCTAA--------------------AGTAA-TTTTGTTTGTCTATTTCACCTCTTGAGGTAACTATGTATTCCAGGTTAACAAAAATCCTGAAACATATTGCCATTGGATTTAATTTTATCGTG-ACCTC---CTTCCTGTCATCTATGATTAG-CTATATTGTGCTACCCTGTAGCTAATGGGATCTCCCAGTACTCCTTGGGAGGTCACAGAGAG--CTTCAGTCAATGGGGAGACTAATTTGTTTATCTGTAGTTTCAATC--ACATGTTTTATTTTATGCTCA-GAGAAGGACTTATAAAGCCTAGGAGTAAGAATGACCTGGTTAATGAAATTGCAAAGGTTCAAGG-ATACTA--TTAAC-ATTT i rn4.chr11 C 0 C 0 s mm9.chr16 22796616 857 - 98319150 GTGATCAGAATTCTCACTTTTCTATG---AAGAATGTTTGGAC-------AAAAAAAAATGACGGCAAAGAGAAAGGCATGGCAAAATATCTGCCATC-TTG-TAGCAAGCTGTATATTCAT---GCTTTGAACATTTAAAAATTATCTTTTCCAAAAG-----TTAGGCAATTC----------------------------TATTATTTCTCTGTAATCATAAGGCCACAGAGCTAGATGGTAA-TCTGCCTGTTGAAGGACTTCCAGAAGA---ATATACAACTTCATAACATAGAGGTCACTACTCAGACAATAGACAAAAGACTGAATGAGTTCTGTGCTGTATACCG--------------------------------------------------TGGCATTTATAAAGTAAGTGCTGGAGTCCTGGGAACTTGCTAATTAATATGGCTTTCATAGACATTTCATTAACCTAAATGGCTGAGGTGTCCTGTAGATAGACTGCGTGTGTTCTCATCTTTAACCTTTCTGTAATGTTCCATAATTGCAGATTTCACTGATTTTTAATAGTAGAAGAAGAACAATAGTTTATAAAGTTATTT-------------------GGTTTTC--ACTAACA-GCTAA--------------------AGTGA-TTTTTTTT---TATTTCACCTCTTGAGCTAACTATGTATTCCAGGTTAACAAAAATCCGGAATCATGTTGCCATTGGCTTGAACTTTGTAGTG-ATTTTAAACTTCTTGTCATCTATGATTAG-TTATAGTGTGCTACTATGTAGCTAATGGAATCTCCAAATAGTCCTTGGGAGGTCACAAAAATACCTCCAGTAAACGCTACGACTAATTTGTTTATCTGGAGTTTCTATC--AAATGTTTTATTTTAACCCCA-GAGAAGGACTAATGAAGCCTGGGAGCAAGGATGACCTGGTTAATGAGATTGCAAAGGTTCAAGG-ATACTA--TTAAG-TTTT i mm9.chr16 C 0 I 2050 s oryCun2.chr14 21993174 951 - 163896628 AACAGCTGAAAACCAAATTTTGAA--AAAAAATTGATTTTGGTTAATATTAGATAGAAATGACAACAAGGAAAAAAATAAAGACTTAGGTTTTTCATC-TTG-TAACA----TTATGTTGATACAACACTGAAAAATCAACAGTCCTCATTTATAAACAAATTTATAAGCAATTTTCTATTGTTTATAAATACTGTTATAAAATACTGTTTCTCACTATTGTCAAAACTATTTTATTAAAGGAACTTTCTGTATCATAAAGGATTTATAGAAAC---ATGCAATACATAATAACACAGAGGTTACCAGAGGGAAAATGGATGTAAGACTGAAAGAGATAAGCCCTGTGCAGAAATCTAGAT-GACACACAGTTGTGTGCATGGAACTCTATTACTTTCTACCAAAACGTTTACGAAATAGCAGTGAGATTCCTGTGAAC-TGCTAATTAATGTGACTTCCATAGACATTTCATTAACCTCAACACTTTAGGCTTCCAGTAGATAGACTGCATGTATTCTCATCTTTAACCTTTCTATAATGTTCCCTAAGTACAGATTTCATTGATTCTTAATAGCAAGAGAACATTTGTAGTTTATAAAACAATGTTTT----------TTTTT-TTTTTTT--ACTAATA-TGTGA--------------------AGTGA-TAGCGTCT-TTCATTTCACCTCTAGAGCTAATGATGTATTCTAGGTTAACAAAATTTTCTAATCATGCTATCATTGCTTTAAACTTTACAATG-AACTC---ATTATTTCCGTTTATTACTAG-CTTCATTATGGCAATATGTAGTTAATGAATCTTCAAAATATTTCTTGGGAGGTTA-AAGAGTACCTCAAGTAAATGCCAAAATTAATTTATTTATCTGATTTTTCAGT----AAGTTTTCCTTTTAACCTCCTAAGGATAACGACTTAAGTTAAGCTGTGAAAACTCTTTGGTTAATGAGATTGCAAAAGTTCAAAT-AGACTA--ATGCA-TTTT i oryCun2.chr14 C 0 I 1 s cavPor3.scaffold_34 8619065 905 + 24440124 -TGAACACGATTCTCACTTTTGAATGATAGAAGTGGTTTAGCTTGATATTAAACAGAAATAATAACATGAAAGGAATTAAA--AATATGACTTGTGCTCTTA-TAGCAAACATTATGTTAATGAAGCTTTGAAAATTC--AACTCGCATTTCTAAAAAT-----TTGAAAAATTT----------------------------TACTGTTTCTCAATAACTTCAAAGCTGCATCATTAAATGAAATTTCTGCCTTAGAAATACTTTCCCTAAAT---ATCAAATACTTAATAGCAAACTGATCAATATGGAAACAATGGACAAAAGACTAAATGAAGTAGGCACTGTATGCTGATGTAGAT-GGGACACATCTGTGTTCATGAAAGCCTAACACAAT-TACCAGGGCATGTATAAAAGAAAAGTTGGATTCCTGTGAACTTGCTAATTACTATGACTTCCACAGACATTTCATTAACCTAAATGGTTGAGGTTTCTTGTAGATAGATTGTGTGTATTCTCATGCTTAACCTTTCTACAATGTTCTCTAATTATAAATTCTGCTGA---TTAATAGC-----------AATACTTTATAAAGTTATATACT----------AATT--ATTTTTC--CCTATTA-TATGA--------------------GGTGA-TTTTGTCT-TTTATTTCCCCTTTGGAGCTCATTATTTATTCTAGGTTAACGAAAATTCCTAATCATGCTATCACTGGTTTCAACTTTACAATG-AACTC---ATTATTATCATTCATTACTCG-CTGAATTATAGCATTGCGTAGCTGATGAATTCTCAAAGTGTTTCTTGAGAGGTTA-AAGACTACCTCAAATAAATGTCCAGATTCATTTATTTATCTGTATTTGCTATA--AAAGATTTCTTTCTAATGTCA-AAAGGAAACTAATGAAGTTAGGAAGTGAGGA--GTTTGGTTAATTAAACTGCAAAAGTAAAAGATGGATTA--TTGTA-TTTT i cavPor3.scaffold_34 C 0 I 1 s bosTau4.chr1 22912801 888 + 161106243 ATGGGCAAACTTTTCACTTTTGA----AAAAAATGGTTTTGGTTGACAT-----AGAAAT---AATAAA--AGAAAATAAGGAAA----TATGTCATC-TTA----------TTATGTTAGTGCCACATTGAAAATTCAACAATCCTCTTATCTAAAAAA----TAGAAAGTTTC----------------------------T---GTTTCTCATCATCTTAAAATCTATATCATTAAA-------------TCATGGAGAATTTTCAGAAATGTGGTGTTATACTTAGTAGCATCCAGATCACTGAGGGGGAAATGAAGAGAAATTTGAAAGAGGT-AGCACTGTGCAGTAATCTAGTT-GGGACACA--GGTGTGCATGGAGCCATAATACTTCCCATCATGGCATTTGTAAAATTAAAGTTAGGTTCCCATGAACTTGCTAATTAGTATGACTTTTACAGACATTTCATTAACCTAAATAGTTTAGATTTCCTGTAGATAGACTGCATGTATTCTCATCTTTAACCTTTTCATAATGGTCCCTAATTATAGATTTCATTGATTCTTAATAGCAAAGGAACAGCAGTAGTTTATAAAGTTATATTCT----------AATTTGTTTTTTT--ACTAATA-TGTGA--------------------AGTGATTTTTATCT-TTCTTTTCACCTCTAGAGCTAATTAAGAATTCTGGGTTAATGAAATTTCCTGATCATACTAGCATTGATTTAAACTTTACAATG-AAATC---ATTATTTCCATGTATTACTTGCTTGCATTATGGTGGTATTTGGCTAATGAGTTCTCAAAATGATGTCTGAGAGGTTA-AACAGT-CCTCAAATGAATGCCAACATTAATTTATTTGTGTGAATTTTCAAAAACAAGTTTTATTTT-TAACTCTA-AAGGA-CACTAATGTAGTTAGGTTATAAGCACTCTCTGGTTAATGAAATTTAAAAAGTTAAAGT-AGATTACTTCATT-TTTT i bosTau4.chr1 C 0 I 1 s canFam2.chr31 28140077 915 - 42263495 ATGGACAACACTCTTACTTTTGAATGAAAGAAAGGGTTTCGGTTGACCTTAGACAGAAATAACAACAAAGAGGAAAATAAGGAGA----TCTGTCATC-TTATTATCA----TTATATTGATGAAACATTTAAAATTCAACAATCCTC--TTCTAAAAAG----TAGAAAGTTTC----------------------------T---GTTTCTCATTATCTTCAAAACAATATCATTAAATATAATTTCTGCCTCATGAAGGATTTCCAGAAAT---ATGCAA-ACTTAATAGCATCCAGATCATTAGGGGGGAAATAGATAGAAGATTGAAAGAGGTAAGCACTGTGCGGTAATCTAGAT-GGAACACA-CTGTGTGCACGAAGCCTTAATACTTTTTATCATGGCATTTATAAAATAATAGTTAGGTTCCTGTGAACCTGCTAATTAATATGACTGTCATAGGCATTTCATTAACCTAAGCAGTTTAGGTTTCCTGTAGATAGACCACATGTATCCTCATCTTTAACCTTTCCATAATGTTTCCTAATTACAGGTTTCATTGATTCTTAATAGCAATGGGACAATAGTGGTTTATAAAGTTATGTTCTAATTTTTTTACACTTTTTTTTTTACACTAATG-AGTAA--------------------AGCAA-TTTTGCCT-TTCATTTCCCCTCTAGAGCTAATTATGCATTCTAGGTTAACAAAAATTCCTGATCATGCTACCATTGGCTTAAACTTTATAATGAAACTC---ATTATTTCCATTTATTACTAGACTGCATTACAGTGATATGTGGCTAATGAGTTGTCAAAATGTTTTTTGAGAGGTTA-AAGGATACTTCAAATAAATGTCAACATTAATTTA----TCTGAATTTTTAAAA--AGTTTTCTTTTT-TACCCTCA-AAGGA-TACTAATGAAGTTAGGATATGAGTTCTCTCTGGTTAATAAAACTGCAAAAGTTAAAAT-GGACTA----------TT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28493063 916 - 41866177 ATGGGCAAAATTCTCACTTTTGAATGTAAGGAATGGCTTTGATTGATATTAGAAAGAACT---AACAAAGGGAAAAATAAGAAAAT--GTTTGTCATC-TTA-TAACA----TTATATTAATGAAACATTGAAAATTCAACAATCCTCTTTTCTAAAAAA----TAGAAAGTTTC----------------------------TACAGTTTCTCATTATCTTCAAAGCCATGTCATTAAATGAAACTTCTACTTCATGAGGGATTTCCAGAGAT---ATGCAATACTTAATAGCATCCAGATGATTAGGAGGAAAATGGATAGAAGATTGAAAGAGGTAAGCACTGTGTGGTAATCTAGAT-GGGACACAGTTGTGTGCATG-AGACTTAATACTTTCCATCATGGCATTTATGAAATAAAAGTTAGGTTCCTGTGAATCTGCTAATTAATATGACTTCCATAGACATTTCATTAACCTAAGGCGTTTAGGTTTCCTGTAGACAGACTGCATGTGTTCTCATCTTTAACCTTTTCATAATGTTCCCTAATTACAGATTCCATCGATTCTTAATAGCAAGGGAACAGTAGTGGATTATAAAGTTATGTTCT----------CATTTGTTTTTTT---CTAATA-TATGA--------------------AGTGA-TTTTGTCT-TTCATTTCACCTCTATGGCTAATTACGCATTCTAGGTTGACAAAAATTCCTGATCATGCTATCCTTGGTTTAAACTTTACAATG-AACTC---ATTATTTCCATTTATTACTAGCCTGCATTAAGGCAATACATGGCTGATGAGTTCTCGAAATGTTTTTTGAGGGGTGA-AAGAGTACCTGAAGTAAATGCCAACGTTAATTTACTGTTATGAATTTTCAAAA--AAGTTTTCTTTT-TAACCTCA-AAGGA-CACTGATGAAGTTAGGATGCACGCACTCTCTGGTTAATAACATTGCAAAAGTTAAAAT-GGATTA--TTATT-TTTT i equCab2.chr26 I 264 C 0 s loxAfr3.scaffold_13 41916481 907 + 62548349 ATGGGCAAAATTCTCAGTTTTAAAAGAAAGGCATGATTATTGTTGACAGTAGACAGAAATAACAACATAGAAGAAAACAAGGATAGATGTTTGCCATC-TTG-TAATA----TTAAATTAATGAAACATTGAAAATTCAATAACATTCTTTTCTAAAAAA----TGGAAAGTTTC----------------------------TGCTGTTTCTCATTATCTTCAAAGCCATATCATTAAGTGTAATTTCTGCATCACTAAGGATTTCCAGAAGT---ATGCAATCCTTAATAGCATACAGATCACGAGGGGGAAAATGGGTA------------------TCCCTGTGTGATAATCTAGATGGGGACACAGTTGTGTGCAGGAAGCCCTAATGCTTTCTACCACGGCATTTATAAAATAAAAGTTAGACTCCTGCGAACCTGCTAATTAATATGACTTTCATAGACATTTCATTAACCTAAACGTTTTAGGTTTCCTGTAGATAAACTGCATGTATTCTCATCTTTAACCTTTCCATAATGTTCCCTAATTACAGATTTCATTGATTCTTAATAGCAAAAGAACAGCAGTAGTCGATAAAGTTATGTTCT----------AATTT-GTTTTTT--ACTAATATTGTGA--------------------AGTGG-TTTTGCCT-CCTTTTTCACCTCTAGAGCTAATTATGCATTCTAGGTTAACAAAAATTCATGATCACGCTATCATTGGTTTAAACTTGACAATG-AACTC---ATTATTTCCATTTATTACTAAAGTACATTATGGTGATATGTTGCTAATGAA-TCTCAAAATATTTCTTGAGAGGTTA-AAGAGTGCTTCAAGTAACTGCCAAAATTTATTTATTTATCTGAGTTTTCAATA--AAAGTTTTCTTTTTAACTTTA-AAGTGGCACTAATGAAGTTAGGATATAAGGACTTTCTGGTTAATGAAGTTGCAAAAGTTCAAAT-GGGCTA--TTGCA-TTTT i loxAfr3.scaffold_13 C 0 I 2 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=137245.000000 s hg19.chr4_gl000194_random 155208 135 + 191469 TCCTCATACTATGATGGC--TATAA-TTTT-TAAAAC--------AGTAGAAATGTTTAATT---------TTTAAAGGCTA-CTAGTGTCTATTTCATTCAAAGATGTGAGCTCTTCAGTTCAACTTGT----TGTTTGAAATTTGAACAGCTTTTTCTT s rheMac2.chr2 280132 135 + 189746636 TCCTCATAATATGATGGC--TATAATTTTT-TAAAAC--------AGTAGAAATGTTTAATT---------TTTAAAAGCTG-CTAGTGTCTATTTTATTCAAAGTTGTGAACTCTTCAGTTCAACTTGT----TGTTTTAAATTTGAGCAGC-TTTTCTT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3555753 136 + 6711082 TCCTCATACTATGATGGC--TATAATTTTT-TAAAAC--------AGTAGAAATGTTTAATT---------TTTAAAGGCTA-CTAGTGTCTATTTCATTCAAAGATGTGAGCTCTTCAGTTCAACTTGT----TGTTTGAAATTTGAACAGCTTTTTCTT i panTro2.chr4_random C 0 C 0 s rn4.chr11 73444117 119 - 87759784 ------TCCAGTTATA-CTTTATCATCTGG-TACTATCATTTGGCAGTG-ATGTGCTTAATTCTGTTTGAATTAGAGAAATG-CAAGCCTC--------------------------------AGTTTATCTGTGGGTTGACATTTGAATTGTTTTATTTT i rn4.chr11 C 0 I 1814 s cavPor3.scaffold_34 8619971 100 + 24440124 TTCTCACACATTCATAGCTCTATGATTTTT-TACAAT--------ACTG-AAATGTATATTT---------TTTAAAGACTG-CTAGTGTT--------------------------------AGCTCAT-------TTGAAATTTGAACAACTTTCTT-- i cavPor3.scaffold_34 I 1 C 0 s oryCun2.chr14 21994126 137 - 163896628 CTTTCTCACCGTGATGACCATATGATTTTT-AAAAAC--------ATTGAAAATGTTTAAT----------TTTAAAGGCTG-TTAATGTCTATTTTATTCAAGTAGGTGAACTCCCCAATTTAGTTTAT----TGGTTAAAATTTGAGTAGCctttcttt i oryCun2.chr14 I 1 I 28 s bosTau4.chr1 22913690 133 + 161106243 CCCTCATCCTCTGATGGTTATATAGTTTCt-taaaat--------agttaaaatatttaa-t---------tttaaaGGCTGTCTAGCAT---TTTTAGTCAAAGGGATAAGCTTTTCAGTTTGGCTGGT----CG-TTGAAATTTGAGCAATCTTTCTT- i bosTau4.chr1 I 1 C 0 s canFam2.chr31 28140992 114 - 42263495 ---TCA-----------------ACTTTTTCTGAAAC--------AGTGAACATGTTTAATT---------TTTAAAGGCCATCTTGTGTCTGTTTTATTCAAAGGGGTCAGCTCCTTCATTAAGCTGGT----TG-TTGAAATTTGAGCAAC----TTT- i canFam2.chr31 C 0 C 0 s equCab2.chr26 28493979 135 - 41866177 ---TCATACTCTGGTGGTTATACGATTTTTTTTAAAC--------AGTGAAAATGTTTAATT---------TTTAAAGGCTGTCTAGTATCTGTTTTATTCCAAGCGGTGAGCTCCTCAGTTTAGCTGAT----TG-CTGAAATTTGAACAACCTGTCTT- i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41917390 137 + 62548349 CCCTCAAACTAGGAGGGCTATATGGTTTTG-AAAAAC--------AGTGAAAATGTTCATTT---------TTAAAAGGCTG-CTAATGTCTGTTTTATTCCAAAGGGTGAGCTCCTCAATTTTGCAAGT----TGGTTGGAAGTCGATTTGCCTTTCTT- i loxAfr3.scaffold_13 I 2 C 0 e mm9.chr16 22797473 2050 - 98319150 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=73425.000000 s hg19.chr4_gl000194_random 155343 51 + 191469 GCTTTTGTTCAATACAGTTATTTAACAGTCCAGGCAGGCCTCCGGAGTTAC s rheMac2.chr2 280267 51 + 189746636 GCTCTTGTTCAGTACATTTATTAAACAGTCCAGGCAGGCCTCCAGAGTTAC i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3555889 51 + 6711082 GCTCTTGTTCAATACAGTTATTTAACAGTCCAGGCAGGCCTCCGGAGTTAC i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8620071 47 + 24440124 CTTTTTGTTTAATATAATTTCTGAACAATC----CAGGACTCCAGAGTTAC i cavPor3.scaffold_34 C 0 I 1550 s oryCun2.chr14 21994291 45 - 163896628 ttttttttTTAATGC--TCTCTTAATGGTT----CAGGTCTCCAGAGTTAT i oryCun2.chr14 I 28 I 33 s bosTau4.chr1 22913823 47 + 161106243 TCTTTTGTTTAATATAATTATTGACTAGTC----CAGGCTTCCAGAGTTAC i bosTau4.chr1 C 0 I 4 s canFam2.chr31 28141106 35 - 42263495 TCTTCTTTTTAATATAGTTACTGACCAGTC----CAAGC------------ i canFam2.chr31 C 0 I 146 s equCab2.chr26 28494114 47 - 41866177 TCTTTTATTTAACAGACTTACTGACCAGTC----CAGGCCTCCAGAGTTAC i equCab2.chr26 C 0 I 4 s loxAfr3.scaffold_13 41917527 47 + 62548349 CTTTTTGTTTAATATGGTTACTGACCAGTT----CAGACCTCTAGAATTAC i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73444236 1814 - 87759784 I e mm9.chr16 22797473 2050 - 98319150 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=-10088.000000 s hg19.chr4_gl000194_random 155394 32 + 191469 ----ATATATG----TATG----------------------------------------------------------------TGGCTATGTGTG-----TATATATAC----- s rheMac2.chr2 280318 32 + 189746636 ----ATATATG----TATG----------------------------------------------------------------TGGCTATGTGTG-----TATATATAC----- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3555940 32 + 6711082 ----ATATATG----TATG----------------------------------------------------------------TGGCTATGCGTG-----TATATATAC----- i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21994369 87 - 163896628 ----ATACAAA----TATAAAGACATAAAACTTTCAGCAGCAATCTTTAAAGTTCATATTGTAAATCCTAAGCAACTGGAAGTTAACTCTTTCTG------------------- i oryCun2.chr14 I 33 I 15 s equCab2.chr26 28494165 41 - 41866177 ----ATATACAAAATCATA----------------------------------------------------------------TCATCAGTTATTAGACGCATATATAA----- i equCab2.chr26 I 4 I 94 s bosTau4.chr1 22913874 39 + 161106243 ----ATATATGAAATTATG----------------------------------------------------------------TAAACAGTCATTAGGCACATGTAT------- i bosTau4.chr1 I 4 I 49 s loxAfr3.scaffold_13 41917574 50 + 62548349 TGGTATATATGAGATCATA----------------------------------------------------------------CAAACGGTGATTTGACACATGTATAAATTAC i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73444236 1814 - 87759784 I e mm9.chr16 22797473 2050 - 98319150 I e cavPor3.scaffold_34 8620118 1550 + 24440124 I e canFam2.chr31 28141141 146 - 42263495 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=-9161.000000 s hg19.chr4_gl000194_random 155426 4 + 191469 ATA-----------------------------------------------G s rheMac2.chr2 280350 4 + 189746636 ATA-----------------------------------------------G i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3555972 4 + 6711082 GTA-----------------------------------------------G i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8621668 4 + 24440124 ATA-----------------------------------------------C i cavPor3.scaffold_34 I 1550 C 0 s oryCun2.chr14 21994471 4 - 163896628 ATA-----------------------------------------------T i oryCun2.chr14 I 15 C 0 s equCab2.chr26 28494300 4 - 41866177 ATG-----------------------------------------------G i equCab2.chr26 I 94 I 10 s canFam2.chr31 28141287 4 - 42263495 ATG-----------------------------------------------A i canFam2.chr31 I 146 I 10 s bosTau4.chr1 22913962 51 + 161106243 ATGCAACTGGACATTGATTCCTTCAATTTCTAAACTTTGAAATACAAGTGG i bosTau4.chr1 I 49 I 10 s loxAfr3.scaffold_13 41917624 4 + 62548349 ACA-----------------------------------------------G i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73444236 1814 - 87759784 I e mm9.chr16 22797473 2050 - 98319150 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=-51581.000000 s hg19.chr4_gl000194_random 155430 33 + 191469 A----------------------------------------------------------------------------------------------------AGTACAA--ATAACATATAA-------ACAAT--TTACATAAG- s rheMac2.chr2 280354 43 + 189746636 AAGC------------------------------------------------------------------------------------------ACTATGCAGTACAA--ATAGCACATAA-------TCAAT--TTACATAAG- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3555976 33 + 6711082 A----------------------------------------------------------------------------------------------------AGTACAA--ATAGCATATAA-------ACAAT--TTACATAAG- i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8621672 40 + 24440124 A----------------------------------------------------------------------------------------------------AATGGAAACATATGGGAGGA----AAGGCAATGATTATAAAAA- i cavPor3.scaffold_34 C 0 I 1 s oryCun2.chr14 21994475 42 - 163896628 G----------------------------------------------------------------------------------------------------AATGGAA--ATACCATAAAATCTTAACAAAATTGTTATTCAAA- i oryCun2.chr14 C 0 I 1 s bosTau4.chr1 22914023 34 + 161106243 ----------------------------------------------------------------------------------------------------TAGTAACA--ACAGCAGGCAA------TTTAAAT--TTTGTAAA- i bosTau4.chr1 I 10 C 0 s canFam2.chr31 28141301 34 - 42263495 ----------------------------------------------------------------------------------------------------TAGTTACA--ATAGCATATAA------TTTAAAT--CCTACAAG- i canFam2.chr31 I 10 C 0 s equCab2.chr26 28494314 34 - 41866177 ----------------------------------------------------------------------------------------------------GAGTAACA--ACAGCATATAA------GTTAAGT--TGTGCAAA- i equCab2.chr26 I 10 C 0 s eriEur1.scaffold_367462 54182 28 - 118109 -----------------------------------------------------------------------------------------------------AGTTACA--AT-ttgtaaaa------tgtaaaatatt------- i eriEur1.scaffold_367462 N 0 N 0 s loxAfr3.scaffold_13 41917628 131 + 62548349 ---CTTTCAGTAGCAACCTTTGGGCCTTATTTTGTAATTCTATGCAACTGAAATTGATTTCTTCAATTTTTAAGTTGTGAAATGCTAGTGAAACACCATATAGTAAAA--ATAGCATATAA-------TTAAA--CTATGAAAAA i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73444236 1814 - 87759784 I e mm9.chr16 22797473 2050 - 98319150 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=106695.000000 s hg19.chr4_gl000194_random 155463 68 + 191469 ACTTTTGCTTTTGATGAAAATTCTTCTAAAAGTGAATATAAATTAATAGCATATGGAGCCTACAAAAA s panTro2.chr4_random 3556009 68 + 6711082 ACTTTTGCTTTTGATGAAAATTCTTCTAAAAGTGAATATAAATTAATAGCATATGGAGCCTACAAAAA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 280397 68 + 189746636 ACTTTTGCTTTTGATGAAAATTCTTCTAAAAGTAAATATAAATTAATAACATATGGCGCCTACAAAAA i rheMac2.chr2 C 0 C 0 s tarSyr1.scaffold_569726 6 67 - 903 ACTTTTGA-TTTGAAGAAATTTTTTTTAAAAGTGCATATAAATTAATAGCATATGGAAACTATAAAAA i tarSyr1.scaffold_569726 N 0 C 0 s cavPor3.scaffold_34 8621713 64 + 24440124 ATTTTTACTTTGGA-GAACATTCTTAA-AAACTG--TATACAACAATAACACATTAGACATACAAGAG i cavPor3.scaffold_34 I 1 I 1 s oryCun2.chr14 21994518 66 - 163896628 ACTATCATTTTTGA-AGAAATTCTTCTAAACGTACATATAAATTAATAGCATAGGAAATGGGT-AGAG i oryCun2.chr14 I 1 C 0 s rn4.chr11 73446050 40 - 87759784 ----------------------------AAGATGATTTTAAATTAATTACATACAGGACCTGTAAGTA i rn4.chr11 I 1814 C 0 s mm9.chr16 22799523 40 - 98319150 ----------------------------AAGATGATTTTAAATTAATTACATATAGGACCTATAAGTA i mm9.chr16 I 2050 C 0 s equCab2.chr26 28494348 68 - 41866177 ACTTTTGCTTCTGAAGAAAAGTCTTCTAAAAGTGCATATAAATTAATAGCATATGGAACCTATAAAGA i equCab2.chr26 C 0 I 1 s canFam2.chr31 28141335 54 - 42263495 GCTTTCA-TTTGGCAGAAAATTCCTCTAAAAGTATATATAAATTAAGAGCATATA------------- i canFam2.chr31 C 0 I 380 s bosTau4.chr1 22914057 63 + 161106243 ACTTTTGATGTTAAAGGAAATTTTTTCAAAA-TGCATATAAAT----AGCATATGGAATCTCTAAATA i bosTau4.chr1 C 0 I 1 s loxAfr3.scaffold_13 41917759 58 + 62548349 ATGCTTACTTTTGAAAAAAATGCTCTTAAAATTTCATATAAATTAATAGCATAAGGAA---------- i loxAfr3.scaffold_13 C 0 I 12 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=213491.000000 s hg19.chr4_gl000194_random 155531 236 + 191469 T-----TGTCCAATAGGGAACTAGGAAAAGATAATTTGTGAA---GAA---AAAGTTTGCT-AAAACAGACTTTTTATTTTTACATGTAATAACTTTATATT-GAAGGGTTTCCAGAAATATAAAATGTTATAG--GGCACTTATCCTGAGA----CACATGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAA-----AATAAAGGACAAATAGAGATAG-----ATACTTAAGTGGaa-atgaaacactgcatgttctcac s panTro2.chr4_random 3556077 236 + 6711082 T-----TGTCTAATAGGGAACTAGGAAAAGATAACTTGTGAA---GAA---AAAGTTCGCT-AAAACAGACTTTTTATTTTTGCATGTAATAACTTTATATT-GAAGGGTTTCCATAAATATAAAATGTTATAG--GGCACTTATCCTGAGA----CACACGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAA-----AATAAAGGACAAATAGAGATAG-----ATACTTAAGTGGaa-atgaaacactgcatgttctcac i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 280465 213 + 189746636 T-----TGTCTAATAGGTAAGCAGGCAAAGATAATCTGTGAA---CAA---AAAGTTTGCT-AAAACATACTT----TTTTTACATGTAATAACTTTATGTT-GAAGGATTTCCAGAAATATATAATGTTATAG--GGCACTTATCCTGAGA----CACATGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAA-----AATAAAGGACAAATAGAGATAG-----ATACTTAAGTGGAA-ATG------------------- i rheMac2.chr2 C 0 I 10 s tarSyr1.scaffold_569726 73 213 - 903 T-----TGTTCTATAGGGAATT-GATAAAGAT-ATCTGTGAA---CAAAACAAAGTTCGAT-AGAGTTGCATTTTT-TTTCTACATGCAATGTCTTTATGGTAAAAGGGTTACCAAAAAGATATAGTGTTAAAAGTGTCACTGATCATGAGG----AACATATAGAAGACGAAGGATGGGGTTGGGGCAGAAGTGAA-----AATAA-----AAACAAAAACAG-----GCTGCTAAGTGGAA-A--------------------- i tarSyr1.scaffold_569726 C 0 C 0 s cavPor3.scaffold_34 8621778 192 + 24440124 T-----TGTCTAACAGGTGAATAGATGAAGAT-ATCTATGAGCAAAAC---AAATTTCACT-ATAAAGAAT------TTTTTATGCACAATATCTTTATATT-GAAGGATTTCCTGAAATGCGTAGTGCCGTAG--GAGAT----CCTGAGG----TACACACAGGAGATAAGATATGCA------GGACAGAAGAA--------------CAAACAGAAATAG-----GCTCTTAAGTTAAA-A--------------------- i cavPor3.scaffold_34 I 1 I 27 s oryCun2.chr14 21994584 190 - 163896628 T-----TTCCTAATA-CTGAGTAGACAAAGAT-TTCTCTGAGTGAAAC---ATACTCAGAA---------------------ACTTGTCATATCTTGATGTT-TAAGGGTTTCCAGAAATTTGTAAAGCCGCAG--GACAC-TTATATCAAG----GATGTACAGGAGATAAGGGAAGGG------ATGGAGGTGAA-----AATAAGGAACGATTAGAAATAG-----TCACTTAAGAAGTA-AT-------------------- i oryCun2.chr14 C 0 I 22 s rn4.chr11 73446090 161 - 87759784 T-----TGTCTAGTAGATGGGTTGGCAGAAAT-ATCTGAAAG---AAG---GAATCTGGCA-GATACATTT------TTCCTTCATGGGATATTTTCATAGT-GAAGGATTTCCAGGAATGTGTAATGCTACAG--GACATGATATATGACA----TCAATGCAGGA-ATAAGATGAG----------------------------------------------------TGGAGAAGAT-------------------------- i rn4.chr11 C 0 I 8 s mm9.chr16 22799563 173 - 98319150 A-----CCC----TAGATGGGTTGATAGAAAT-ATCTGAAGG---AAG---GAATCTGGCA-GATACATTT------TTTCTACATGTAATATTTTCATAGT-GATGGATTTCCGGGAATATGCAGTTCTACAG--GACATGATATATGACA----TCAATGCAGAA-CTGAGATGAGCA------CAAAAGATGAA---------------AATCATAAACAG-----A------------------------------------ i mm9.chr16 C 0 I 47 s bosTau4.chr1 22914121 214 + 161106243 T-----TATCTA-TAGGTGAGCATGTCCAGAC-ATCCATGAATAAAAC---AGAGTTTAAT-AAAGTGCTTTTT---TCCCTATATCTAATATGTTTATGTT-GAAGGGTTTGCAGAA-TATTTAAGGCTGTAA--GGCACAGATTATGAGG----TAAAGGCAGGAGGCAAAAGATGTG------GTGGAGGTGAA-----AATGAGGAA-AAACAGAAATAG-----GCCTCCAAGTGGAT-------------ATGTTCTTAT i bosTau4.chr1 I 1 C 0 s equCab2.chr26 28494417 220 - 41866177 T-----TGTCTA-TATGTGAGTAGACAAAGAC-ATCTGTGAGTAAAAC---AAAGTTTGATAGAGATAC-ATTT---TTTCCATATGTAATATCTTTATGAT-GAAGCGTTTCCAGAAATATGTCATACTGCTG--GCCACTGATCATGAGGTACATACAGGCAGGAGACAAAGGATAGA------GTGGAGATGAA-----AACGAGGAACACATGAAAATAG-----GCTCTTAAGTGGGA-------------ATGTTTTTAT i equCab2.chr26 I 1 C 0 s canFam2.chr31 28141769 201 - 42263495 T-----TGTCTA-CAGGTGTATAGACAAAGAC-ATCTGGGAAT-----------GTTT----GAGATGCTTTTT---TTTCTTTATGTAGTATCTTTATGTT-GGAGGGTTTCCAGAAGTACGTCATGCTGTAG--GTCACTGATCATGAGG----AACAGGCAAGAGGCAAAGGATGGA------ATAGAGATGAA-----AATGAGGAACAAATAGAAAGTGAAGTTGTTTTTATAAGAAAA---------------------- i canFam2.chr31 I 380 C 0 s loxAfr3.scaffold_13 41917829 195 + 62548349 ------TATTTAATAGATGAACAAACAAAGAC-AGCTGTCAATAAA-----AGAGTTCGATAGAGATGCATTTT---TTGGTGTGTGTAATATCTTTATGTC-GAAGAGTTTCCAGGAATATGTAATGCTTCGG--GGCACTGATCATGACA----TATGTGGGGGAGA-------------------AGAGGTGGA-----AATGAGGAAACAATAGAAACAG-----ACTCTCAGGTTGAA-ATG------------------- i loxAfr3.scaffold_13 I 12 C 0 s dasNov2.scaffold_244837 432 216 - 1289 TTATAGTTTTTAATAGGTGAGAAGGTAAAAGC-ATCTATCAACAAAAC---AAAGTTGGATCAAGATGCATTTT---TTTGTATACATAATATCTTTATGTT-AAAAAGTTTCTAGAAAAATTTAATTCTGCAC--TTCTCCAATCACTAGA----TACATGCAGGAGACAAGGG-----------ATAGAAGTGGAGGTGGAATGAAGAAAGAATAGAAACAG-----ACCCTTAAGTGTAA-ATG------------------- i dasNov2.scaffold_244837 N 0 I 4 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=3819.000000 s hg19.chr4_gl000194_random 155767 72 + 191469 tcataggtgggaattgaacaatgagaacacatgcacacaggaaggggaacatcacacaccagggcctgttgt s panTro2.chr4_random 3556313 72 + 6711082 tcattggtgggaattgaacaatgagaacacatgcacacaggaaggggaacatcacacaccagggcctgttgt i panTro2.chr4_random C 0 C 0 s loxAfr3.scaffold_13 41918024 7 + 62548349 -----------------------------------------------------------------TTGTTGT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446251 8 - 87759784 I e mm9.chr16 22799736 47 - 98319150 I e bosTau4.chr1 22914335 0 + 161106243 C e cavPor3.scaffold_34 8621970 27 + 24440124 I e oryCun2.chr14 21994774 22 - 163896628 I e canFam2.chr31 28141970 0 - 42263495 C e tarSyr1.scaffold_569726 286 0 - 903 C e equCab2.chr26 28494637 0 - 41866177 C e rheMac2.chr2 280678 10 + 189746636 I e dasNov2.scaffold_244837 648 4 - 1289 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=4149.000000 s hg19.chr4_gl000194_random 155839 57 + 191469 ggggtggggagagggggtagggatagtattaggagatatacctaatgctaaatgaca s panTro2.chr4_random 3556385 57 + 6711082 ggggtgggggtagagggtagggatagcattaggtcatatacctaatgttaaatgacg i panTro2.chr4_random C 0 C 0 e rn4.chr11 73446251 8 - 87759784 I e mm9.chr16 22799736 47 - 98319150 I e bosTau4.chr1 22914335 0 + 161106243 C e loxAfr3.scaffold_13 41918031 0 + 62548349 C e cavPor3.scaffold_34 8621970 27 + 24440124 I e oryCun2.chr14 21994774 22 - 163896628 I e canFam2.chr31 28141970 0 - 42263495 C e tarSyr1.scaffold_569726 286 0 - 903 C e equCab2.chr26 28494637 0 - 41866177 C e rheMac2.chr2 280678 10 + 189746636 I e dasNov2.scaffold_244837 648 4 - 1289 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=2292.000000 s hg19.chr4_gl000194_random 155896 93 + 191469 agttaatgggtgcagcacaccaacatggcacatgtatacatatgtaattaaattgcacgttgtgcacatgtgccctaaaacttaaagtataaa s tarSyr1.scaffold_569726 286 13 - 903 AGTT----------------------------------------------------------------------------TTTATAAGA---- i tarSyr1.scaffold_569726 C 0 C 0 s panTro2.chr4_random 3556442 92 + 6711082 agttaatgggtgcagcacaccaacatggcacatgtatacatatgtaactaaactgcacgttgtgcacatgtgccctaaaacttaaagtat-aa i panTro2.chr4_random C 0 C 0 e rn4.chr11 73446251 8 - 87759784 I e mm9.chr16 22799736 47 - 98319150 I e bosTau4.chr1 22914335 0 + 161106243 C e loxAfr3.scaffold_13 41918031 0 + 62548349 C e cavPor3.scaffold_34 8621970 27 + 24440124 I e oryCun2.chr14 21994774 22 - 163896628 I e canFam2.chr31 28141970 0 - 42263495 C e equCab2.chr26 28494637 0 - 41866177 C e rheMac2.chr2 280678 10 + 189746636 I e dasNov2.scaffold_244837 648 4 - 1289 I e ponAbe2.chr3 42363023 26895 + 202140232 I a score=334408.000000 s hg19.chr4_gl000194_random 155989 229 + 191469 aaaaaaaTCATCAA------ACAGGAGGTAATTTCAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCGCAAAAGAAGATA-------------AATTGCATGTCTATG----TAGATC------------ATGTCAATGAAATA-AAC-----AATAAA-GTT----ACTTATTGGAATATTGAAAGTGG---TTGataataaataaat-------------------------------------tatttatatttatGGT--AAAAGCAATAAACTTGA-TTTTTAGGGGGTTCAATGACTTCCTGA s panTro2.chr4_random 3556534 229 + 6711082 aaaaaaaTCATCAA------ACCGGTGGTAATTTCAAAACATGGCTTTTCCAGGCAACAAATTTTCTGAATGTATCACAAAAGAAGATA-------------AATTGCATGTCTATG----CAGATC------------ACGTCAATGAAATA-AAC-----AATAAA-GTT----ACTTATTGGAATATTGAAAGTGG---TTGataataaataaat-------------------------------------tatttatatttatGGC--AAAAGCAATAAACTTGC-TTTTTAGGGGGTTCAATGACTTCCTGA i panTro2.chr4_random C 0 C 0 s equCab2.chr26 28494637 226 - 41866177 AAGAAAATCATCAT------ATGGGAGGTAATTTCAAAAC--GATGTAACCAGGTAGC--ATTTTCTGAATGTACCACAGAAGATGACG-------------GATCACCTGTTCATG----TAGATA------------ACGCCAGTGCAATA-AGC-----AATAGGAGAT----ATTTATTGGAATCTTGAAAGTGG---TTGATAGTGGATGAAT-------------------------------------TATTAGTATTTATGTT--AAAAATAATACCCTTAA-TTTTTAGGGCGTGTGATGGTTTCCTGA i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22914335 258 + 161106243 -AAAAAATTATCAG------AGGAAAGGTAACTTCAAAAT--GACTTTACCAGGTAGG--GCTTTCTGAATATACCACAGAAGATGGCT-------------CGT----TTTTCATG----TAGATC------------ATGCCAGTGCAACA-AGC-----AATAAGCACT----GTTTATTGGACTCTTCAAAGTGG---TTGATAGTGAATGAAGTTATGtttatatttatgttaaatatatatttaggttatatttatatttatgtt--aaaatCAGTAACCTTGA-TTTATAGGTGGTGTGATGACCTCCTGA i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28141970 220 - 42263495 -------TGGTCAT------GTGGGAGGTCATTTCAAAACGTGACTTTATCAGGTAGC--GTTTTCTAAATGTATCACATGAGCTGATT-------------GATCACCTGTTTATG----TAAGTT------------ATGCCATGGAAATA-AGC-----CATGAAGGCT----ATGTATTATAGTCTTACAAATGG---TTGATAGTGGATGAAT-------------------------------------TATTTATACTTATGTT--AAAAGCAATAATCTTGA-TTTTTAAGGAGTGTAATGACCTCTTG- i canFam2.chr31 C 0 C 0 s rn4.chr11 73446259 181 - 87759784 -----------CAAACAGAACCAGGATATTACACAGAAATGCT--GTCGCAAGAAAA-----TTCTCCAATGAT----------------------------AATTATAAAACAACA------------------------AACAGTGAAAGA-AGC-----AA-----TTTTAAAATATGTTTA------GAACTTATTAGTCAAGAGTTGACAAAT-------------------------------------TATTTGTATTTGTGGT--AAAGCAAT-AAACTCAA-GTTT---------CACAGAATTCCTAA i rn4.chr11 I 8 C 0 s oryCun2.chr14 21994796 229 - 163896628 --------------------ACAGGCAGTCATTTCAAAACATGACTTTACTAAGAAAT--ATTTTCTGAATGCTTCACAGCTGTGAATGTAGACATAGATGTAGTCACAGATGTTTC--TGTAGAGT------------ATGGCAATGACAAA-AGCTGAAAAG-----CCT----ATTTGTTGTACCACTAAAAGCAA---TTGATGATGGATACAT-------------------------------------TGTTTTTATTTATATT--AAAAGGAATAAGCTTGA-TTTTTAGGGGGTGTGATGACTTCCTGA i oryCun2.chr14 I 22 C 0 s mm9.chr16 22799783 181 - 98319150 ----------------------------TTATATA-AAATAAA--TTTGCTAGGCAGC--GTTTTCTGAATAGTGCACAG----------------------AATTACAGATGTACA----TACATT------------ATAACAGCGAAGGA-AGC-----AA-----TTTTGAAATATGTTTG------GAACTCATTAGTTGAGAGTTGATAAAT-------------------------------------TATTTGTATTTGTGGT--AAAGCAATAAAACTCGA-GGTT---------CACAGACGTCCTAA i mm9.chr16 I 47 C 0 s cavPor3.scaffold_34 8621997 195 + 24440124 --------------------------GGTAATTTAAAAACGCTACTTTTCCAGATATC--TTTTATTGTATGTGCCACA-----------------------AATGAC-GATGTGCTTTTGTAAATC------------ATACCAATAAAAAATAAC-----AA-----GTT----ATTTGTTGAAGCACTGAACGTGT---TCTAGTGTGAACAGAT-------------------------------------TCTTTGTATTC-TGTT--AGAATTACTAAATTTGG-TTTTTA-ACATTACATTGGCTTTCTAA i cavPor3.scaffold_34 I 27 C 0 s rheMac2.chr2 280688 227 + 189746636 ---AAAATCATCAG------ACAGGTGGTAATTTTAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATA-------------AATCATGTGTCTATG----TAGATC------------ATGACAATGAAATA-AAC-----AATAAAGGTT----ACTTATTGGAATATTGAAAGTGG---TTGataataaataaat-------------------------------------tatttatatttatGAT--AAAAGCCATAAACTTGA-TTTTTAGGGAGTTCAACGACTTCCTGA i rheMac2.chr2 I 10 C 0 s tarSyr1.scaffold_569726 299 237 - 903 ---GAATTTCTCAA------ACAAGTAGTAATTTCAAAACATAACTTTCCCTGGTAGC--ATTTTCTGAATGTCTCAAAGAAGAAAACG-------------GATCATACATTTATT----TAAATCATTATGTAGGTGATGCTAATGAAATA-AAC-----AATAAAGACT----ACTTATTGAAATATTGAAAGTGG---TTGATAGAAGATGCAT-------------------------------------TGTTTATATTTATGGT--AAAAACAATAAACTTCA-CTTTTAGGGGATGTGATGACTTCCTGA i tarSyr1.scaffold_569726 C 0 C 0 s loxAfr3.scaffold_13 41918031 222 + 62548349 AAGAAAATGATTAG------ATGGGAGATTATTTTAAAATGTGACTTTTCCAGGTAGT--ATTTTCTGAATGTATCATAGAAGCTGATG-------------GAGCACAGGTTTATG----TAGACT------------ATGCCAATGTAGTG-TGC-----AACAAATGCT----ATTTATTGGAGTACTGAAA------------AGTGGATAAAT-------------------------------------TATTTATATTTACGTTAAAAAAGCAATAACTTTGATTTTTTAAGGAGGGCAATGACTTCCTGA i loxAfr3.scaffold_13 C 0 I 268 s dasNov2.scaffold_244837 652 174 - 1289 -------------A------ATAAGAGGTAATTTC-AAACATAATTTCTCCAGATAGC--ATTTTCTGAGTGTA--------------------------------------------------------------------CCAATAGAAAA-AAC-----AATAAAGTCT----ATTTATTGAAATATTGAAAATGG---TTAATAGTGGATAAAT-------------------------------------TATTTGTATTTATGGT--AAAAGCAATATCTTGA--TTTTTAGGGGATGCAAGGACTTCCTGG i dasNov2.scaffold_244837 I 4 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=143206.000000 s hg19.chr4_gl000194_random 156218 143 + 191469 AAA---TATCCTCTCACAGATTTTCTCAGAGTGTCTAGTTGGCAAAAG-----CACAGCTCCAAATAG---CT----------ATTTCTGTCAAC-GTCTACAGAACATTTACAGTTTGATTTC---TA-AAAGTTT---CCA--------TTTCTACTGACCTTACAAATT------TGTAAAGT s panTro2.chr4_random 3556763 143 + 6711082 AAA---TATCCTTTCACAGATTTTCTCAGAGTGTCTAGTTGGCAAAAG-----CACAGCTCCAAATAG---CT----------ATTTCTGTCAAC-GTCTAGAGAACATTTACAGTTTGATTTC---CA-AAAGTTT---CCA--------TTTCTACTGACCTTACAAATT------TGTAAAGT i panTro2.chr4_random C 0 C 0 s equCab2.chr26 28494863 144 - 41866177 AAA---TATCCCCCAACAGATTTTCTGGTGTTGTCCAGTTGGCAAAAG-----CTCAGCTCCGAACAG---CT----------ACCTCTGTCAAA-GTCTATAGAACATTTGCAGTTTGATTTT---CAGCAAGCTT---CAA--------GTTCTACTATCCTTACAAATT------TATAAGAT i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22914593 143 + 161106243 AAA---TATC-CCCAACAGATTTTCGAGGGATATCTAATTTGCAAAAG-----CTCAACTCGAAACAG---CT----------ACCTCTGTCAAA-GTGTATATCACACTTATAGTTGGATTTT---CAGCAAGTTT---CAA--------GTTCTACTATTCTTACAGGTT------TTTAAGAG i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28142190 147 - 42263495 AAC---TATCTTCCAATGGATTTTCTAGGAGTGTCTCACTGGCAAAAG-----CTCAGCCCCAAATAGCTACT----------ACCTTCATCAAA-GTGTA-AGGACATTTACAGTTTCATTTT---CAGCACATTTCAGCAA--------GT--TGCCTTCCTTACAAATT------TATAAGAT i canFam2.chr31 C 0 C 0 s rn4.chr11 73446440 104 - 87759784 GAA---TAATATG-----AACATCTTTAGGATGT-------GAAATTG-----TTCA---GAACATAG---CT------------------------------------ACATGTTTTCATTTT---CGGCATGGTT---AAC--------ATTACATTGTTCATGAAAAAT------TGTAAAAT i rn4.chr11 C 0 C 0 s oryCun2.chr14 21995025 115 - 163896628 AAA---TATCCTTCCAC-AAATTCCTTGGAGTAT-------GCAAAAG-----CACAACTACAAATAG---CT----------AGTTCTA-------------------ATAA-----CATCTA---TGGAACATTT-ACAGT--------TTTACACTATCCTTACaaatt------tataagat i oryCun2.chr14 C 0 C 0 s mm9.chr16 22799964 134 - 98319150 GAA---AAATAGA-----AATATTTTAAGGATGT-------GAAATTG-----TTCA---TAACGTAG---CTTCAAACTGGTATTTCCAGTTAT------TGGTATAAACATGGTTTCATTTT---CAGCATTCTT---TAC--------ATTACATTGTTCTTGAAAAAT------TGTAAAAT i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8622192 115 + 24440124 AAAATCACTTATT-----GATTTTCTTGAGGTTT-------ATAATTC-----C--------AAGGAG---CT----------ACTTCCA-------------------AAAGACTTTC----T---TGGAATGTTT---AATTCCAAGGAGTTAC----TTCCCCAAAACTTAAGTCTACAAAAT i cavPor3.scaffold_34 C 0 M 105 s rheMac2.chr2 280915 141 + 189746636 AAA---TATCCTCTCACAGATTTTCTC--AGTGTCTAGTTGGCAAAAG-----CACAGCTCCAAATAG---CG----------ATTTCTATCAAC-GCCTACAGAACATTTACAGTTCCACTTC---TG-AAAGTTT---CCA--------TTTCTACTGACCTTACAAATT------TGTAAAAT i rheMac2.chr2 C 0 C 0 s tarSyr1.scaffold_569726 536 143 - 903 AAA---TATCCCCCCACAGATTTTTTTTTCAGATTTTTTGGGCAAAAAAAATTCACAAATTCAAACAG---TT----------ATTTCTATCAAC-------AGAACATTTACAATTTGATTTT---TAGAGAATTT---CAA--------GTTCTAATGTCCTTACATGTT------TGTAAGAT i tarSyr1.scaffold_569726 C 0 C 0 s loxAfr3.scaffold_13 41918521 145 + 62548349 gaa---tatccCTGAAGACATTTTCTAGAAGTGTCTAGTGGGCAAAAC-----CACAGCTCCAAACAG---CC----------GCCACCTTCAAAGGTGTACAGATTATTTACAGTTTGATTAT---CTGAAAGTTT---CAA--------GTTTTACTGTCCTTACAAGTT------TATAACAT i loxAfr3.scaffold_13 I 268 C 0 s dasNov2.scaffold_244837 826 148 - 1289 AAA---TATCCCCCAACAAATTTTCTGGAAGTTTCTATTTGGCAAAAG-----TAGATCTCTAAACTG---CT----------ACTGTAATCAGAAGCATACAGGTCATGCACAGTTTTAATTTGCCCTGAAAGTTT---CAA--------GTTCTAATATCCTTACTAGTT------TATAATGA i dasNov2.scaffold_244837 C 0 C 0 e ponAbe2.chr3 42363023 26895 + 202140232 I a score=188703.000000 s hg19.chr4_gl000194_random 156361 86 + 191469 GAATGCCCACCAGGACAAAATATTAAGTGATAAAATTAATTGGATCCTACAAGTGCAAATCTAGGCAAGGAAAATCTTCTTCCTTC s panTro2.chr4_random 3556906 86 + 6711082 GAATGCCCACCAGGACAAAATATTAAGTGATAAAATTAATTGGATCCTACAAGTGAAAATCTAGGCAAGGGAAATCTTCTTCCTTC i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 281056 86 + 189746636 GAATGCCCACTAGGACAAAATATTAAGTGATAAAATTAATTGGATCCTACAAGTGAAAATCTAGGCAAGAAAAATCTTCTTCCTTC i rheMac2.chr2 C 0 C 0 s tarSyr1.scaffold_569726 679 82 - 903 GAATGCCTACTAGGACAAAATATTAAATGGTAAAATTAATTGGATTCTTCAACTGGAAACTTAGACCACTCA----TTCTTCCTTC i tarSyr1.scaffold_569726 C 0 C 0 s rn4.chr11 73446544 83 - 87759784 AACAGTATACCATGTCAAAATATCGAGGATTAGAATGGATTGGATTGCAAGAGTCAATATATAGACCAGAAT-AACTCATC-TAT- i rn4.chr11 C 0 I 1 s mm9.chr16 22800098 84 - 98319150 AAGTGCATACCATGCTAAAATATCAAGGGAAAGAATGAATTGGATTGCAAGAGTCAATATGTAGGCCAGAAC-AACTCATCTTTT- i mm9.chr16 C 0 I 1 s oryCun2.chr14 21995140 80 - 163896628 aaatatttacca----aaaatattaaataataaaataaattGGATCCTACAAGTAGCAAGTTAGGTCACTCT-ATTTCATTCttt- i oryCun2.chr14 C 0 I 381 s equCab2.chr26 28495007 84 - 41866177 GAATGCCTACCAGTATAAAATATTAAGTGATAAAATTAATTGGATCCTACAAGGAAAAAGCTGGGCCACCGT-AGTTCTTCCTTC- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28142337 84 - 42263495 GAATACCAATCAGGATAAAATATTAAATGGTAAAATAAATTGGTTCCTACAAGTGAAAAGCTACGCCACTTC-AGTTCTTCTTTC- i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22914736 84 + 161106243 GAATGCCTACCAGAATAAAATATTAAGGGGCAAATTTAATTGGATCTTACAAGTGAAAAGCTAGGTTACAAA-AATTCTTCCTTT- i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41918666 80 + 62548349 GATTGCCTGCCAGGATAAAATATTAAGTGGTAA----AAGTATGTCCTGCATGTGATAAGTTAGGTCACTGG-AGTTCCTCCCTT- i loxAfr3.scaffold_13 C 0 C 0 s dasNov2.scaffold_244837 974 76 - 1289 GATTGTCTACTAGGATAAAATATTAAATGGTAAAATGAAGCAGATCCTGCAAATGAAAAGCAAGGCTACCAT-GGTT--------- i dasNov2.scaffold_244837 C 0 N 0 e cavPor3.scaffold_34 8622307 105 + 24440124 M e ponAbe2.chr3 42363023 26895 + 202140232 I a score=128724.000000 s hg19.chr4_gl000194_random 156447 64 + 191469 TTAATGAATGA--------TTTTTATGT-----CTCTTCATTCTTGTCCTTCT--AGGT--AGAGCAACACTCTGGAGACC s panTro2.chr4_random 3556992 64 + 6711082 TTAATGAATGA--------TTTTTATGT-----CTCTTCATTCTTGTCCTTCT--AGGT--AGAGCAACACTCTGGAGACC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42389918 64 + 202140232 TTAATGAATGA--------TTTTTATGT-----CTCTTCATTCATGTCCTTCT--AGAT--AGAGCAATACTCTGGAGACC i ponAbe2.chr3 I 26895 C 0 s rheMac2.chr2 281142 64 + 189746636 TTAATGAATGA--------TTTTTATGT-----CTCTTCATTCATGTCCTTCT--AGGT--AGGGCAACACTCTGGAGACC i rheMac2.chr2 C 0 C 0 s tarSyr1.scaffold_569726 761 48 - 903 TTAATGAATGA--------TTTTTATGT-----CTCTTAATTCATGTCCTACT--ATTT--GGAG---------------- i tarSyr1.scaffold_569726 C 0 N 0 s cavPor3.scaffold_34 8622414 60 + 24440124 -----GAATGC-------ATTTTTATGA-----TTCTATATTTATGTCCATAT--ATAGGAGGAGCAGCACTCTGTAGA-- i cavPor3.scaffold_34 M 105 C 0 s mm9.chr16 22800183 72 - 98319150 TTGATGAATGATTTTTTTTTTTTTTTAG-----TTTCTCATTCCTGTCTTTAT--TCAT--AGAGCAGTAGTCTGGGGACC i mm9.chr16 I 1 C 0 s rn4.chr11 73446628 66 - 87759784 ATGATGAATGA-----CTTTTTTTTCAG-----TTCCCCGTTCATGTCCTCAT--TCAT--AGAGCAGCAGTCCGGGGA-C i rn4.chr11 I 1 C 0 s equCab2.chr26 28495091 69 - 41866177 TGAATGATTAA--------TTTCTGTAAGTCTCCTCTTCATTCATGTCCTTGT--AGGT--GGAGCAACACTCTTGAGACC i equCab2.chr26 C 0 C 0 s canFam2.chr31 28142421 66 - 42263495 TTAATAATTGA--------TTTGTAGAAAT---ATTTTTATTCATGTCCTTAT--AAGG--GCAGCAACACTCTCAAGAAT i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22914820 66 + 161106243 GTAATTATTAA--------TTTTCCTAAGT---CTATTCATTCATGGTCTTGT--AGGT--GGAGCAACATTTATGAGACC i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41918746 61 + 62548349 ----TTCGTGA--------ATTTTATAT-----CTCTTCATTCATATCTTCGTGCAGGT--GGAGTGACACTCTC-AGACC i loxAfr3.scaffold_13 C 0 C 0 e oryCun2.chr14 21995220 381 - 163896628 I a score=261956.000000 s hg19.chr4_gl000194_random 156511 161 + 191469 TTCTTTTGAGGCATTTCACCACC----AGAGTAAGTGTGATGTGTGAGTAATTAGTCCACCCAC-AGGGAGCTGGTGAAA------TTAAATTGGAAGTTATTTCCTAACTGGCATATCTTGGAGTAAAATT------AAT---CTAATAACAGC----------T----TTCATAAGAGAGCA-------TAAGCTTAAAA s panTro2.chr4_random 3557056 160 + 6711082 TTCTTTTGAGGCATTTCACCACC----AGAGTAAGTGTGATGTGTGAGTAATTAGTCCACCCAC-AGGGAGCTGGTGAAA------TTAAATGGGAAGTTATTTCC-AACTGGCATATCTTGGAGTAAAATT------AAT---CTAATAACAGC----------T----TTCATAATAGAGCA-------TAAGCTTAAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42389982 161 + 202140232 TTCTTTTGAGGCATTTCACCACC----AGAGTAAGTGTGATGCATGACTAATTAATCTACCCAC-AGGGGGCTGGTGAAA------TTAAATTGGAAGTTGTTTCCTAACTGGCATATCTTGGAGTAAAATT------AAT---CTAATAACAGC----------T----TTCATAAGAGAGCA-------TAAGCTTAAAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 281206 161 + 189746636 TTCTTTTGAGGCATTTCTCCACC----AGAATAAGTGTGATGTATGATTAATTAGTCCACCCAC-GGGGGGCTGGTGAAA------TTAAATTGGCAGTTATTTCCTTACTGGCATATCTTGGAGTAAAATT------AAT---CTAATAACAGC----------T----TTCATAAGCGAGCA-------TAAGCTTAAAA i rheMac2.chr2 C 0 C 0 s rn4.chr11 73446694 169 - 87759784 TGATTTGGAGACTC------ACCTATCAATGTAGCTGCGACATATAGTTAATTAGCCCACTCTCAAGAG---TAGATGG-------TGAAATTAGGACTAATTTCCTAGTT-GTATAGCCTAGAATAAAACT------AACCTCTTAATTAGGGT----------CCCCTTTAAAAAAAAGAAGAGATAATATACTTTAAAG i rn4.chr11 C 0 C 0 s mm9.chr16 22800255 166 - 98319150 TTTTTTGGAGACTCTC--TTACCTATCAATGTAGAAGTGACATACAGTTAATTACCCCACTCTC-AGAG---TAGATGA-------TGAAATTAAGACTGATTTCCTAGTT-GTATACCCTAGAATGAAAAT------AAACTCTTAATTAAGGT----------C----TTGAAAAGAGAGAGAGAGa--ataatttaaaa i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8622474 163 + 24440124 --ACTTAGAGACTTTTGACTACC--TTAATACG---GTGATGTACAAATCATTACCCTATACAC-AGAGGGCTGGCTGAATCAAATTGTAATTACCAC-AATTTCCTAATTGGCTTATCCTGAAATAAAAAT------AAA---GTAATAAAAGT----------T----TTTGAAAGAGAGTG-------TAAGTTTTAAA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21995601 165 - 163896628 TGCTCTGGAGACCTTCCACGGCC-ACAAGTATAAGTGTGGCATGTAACTAATTAGTCTACCCAC-AGGGAGCTGGTTAAA------TTAAATTGAAAGTAATTTCCCAATTGGGATATCTTGAAACTAAA--------AAAATTCTAATAATAGC----------T----TTTGTAAGAGTATA-------AAAGTTAGAAG i oryCun2.chr14 I 381 C 0 s equCab2.chr26 28495160 160 - 41866177 TTCTTGTGAGACCCATGGCCACC----AGTATAACTGCAGTGTATAACTAATTAGCTCACTTTC-AAGGGGCTGGTTAAA------TTATATTGGAAGTAATTTCCCCATTGGTATATCCTGGAATGAAAAA------AAAAT-CTAAT---AGC----------A----TTTGTAAGAAAGTA-------TAAGCTTAAAA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28142487 132 - 42263495 TTCTTGTGAGA-CCATAGCCACC----AATATAACTGCAATTTATAACTAATTAGCCCACCTAC-AGGGCGTTGGTTAAA------TTTAACTGGAAGTAA------------AATATCCTGGAATAAA-----------------------AGC----------A----TTTTAAGAGAGGTA-------T-AGCtt-aaa i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22914886 159 + 161106243 TTTTTGTGAGACCCATGGCCAGC----AATATAACTGTGATGTAT-ACTAACTAGCCCACCTCC-AGGG-ACTGGTTAAA------TTAAATTGAAAGTAATCTCCCAATTGACATATCCTAATATGCCATA------AAAAT-CTAATAACAGC----------A----TTTGTAAG--AGTA-------TAAACTTAAAA i bosTau4.chr1 C 0 I 101 s loxAfr3.scaffold_13 41918807 165 + 62548349 TTCTTTTGAAACCCATGGCCACC----AATAGAACTGTCATTTATAAGTGATTACTCTGCCCAC-AGGAGACTGATTAAA------TTA---------------CCTAATTGGTATATCCTGGAATAGCAATTTTAAAAAGCTCCTAACAACAACAGCTCCAAAAT----CATGGAGGAGCATA-------TAAGCTTAAAA i loxAfr3.scaffold_13 C 0 C 0 a score=42692.000000 s hg19.chr4_gl000194_random 156672 31 + 191469 GAC--------------------AACA---TTTTTCA--TTCAACTTTACCAAACA s panTro2.chr4_random 3557216 31 + 6711082 TAC--------------------AACA---TTTTTCA--TTCAACTTTACCAAACA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390143 31 + 202140232 GAC--------------------AACA---TTTTTCA--TTCAACTTTACCAAACA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 281367 31 + 189746636 GAC--------------------AACA---TTTTTCA--TTCAACTTTACCAAACA i rheMac2.chr2 C 0 C 0 s rn4.chr11 73446863 29 - 87759784 TAA--------------------AATAGATTTTTA-------AATTTTACAAAACA i rn4.chr11 C 0 I 440 s mm9.chr16 22800421 28 - 98319150 taa--------------------aataga-tttta-------aattttatGAAATA i mm9.chr16 C 0 I 14 s cavPor3.scaffold_34 8622637 30 + 24440124 GAA--------------------GGCA---TTTTA-A--TTCAGTTTTACAAAATA i cavPor3.scaffold_34 C 0 I 14 s oryCun2.chr14 21995766 33 - 163896628 GAA--------------------ATAACa-ttttaaa--tttaattttataaaaCA i oryCun2.chr14 C 0 I 2 s bosTau4.chr1 22915146 49 + 161106243 -aacAACAACCACAAAGCTTAAAAATA---TTTTT-A--CCAAATTTTATAAAACA i bosTau4.chr1 I 101 I 2 s equCab2.chr26 28495320 27 - 41866177 -----------------------AACA---TTTTT-A--TTACACTTTACAAAATA i equCab2.chr26 C 0 I 2 s canFam2.chr31 28142619 27 - 42263495 -----------------------aatg---ttttt-a--ttaaattttatgaagta i canFam2.chr31 C 0 I 2 s loxAfr3.scaffold_13 41918972 30 + 62548349 -----------------------AACC---CTTTTTATTTTAAATTTTACAAAACA i loxAfr3.scaffold_13 C 0 I 2 a score=111725.000000 s hg19.chr4_gl000194_random 156703 65 + 191469 AAGTGCAAATTTAGGTGTCCAGTTGTGAAGTTTTGTTGTGTGTGGATTGTACAGTGAA--GGTACCA s panTro2.chr4_random 3557247 65 + 6711082 AAGTGCAAATTTAGGTGTCCAGTTGTGAAGTTTTGTTGTGTGTGGATTGTACAGTGAA--GGTACCA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390174 65 + 202140232 AAGTGCAAATTTAGGTCTCCAGTTGTGAAGTTTGGTTGTGTGTGGATTGTACAGTGAA--GGTACCA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 281398 65 + 189746636 AAGTGCAAATTTAGGTCTGCATTTGTGAAATTTGGTTGTGTGTGGATTGTACAGTGAA--GGTACCA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22800463 65 - 98319150 CACAGTAACCTGAATCTCCTGAATATGAAATGTGATATTGTGTAAATTCTAGAGCAAA--TGTGCTA i mm9.chr16 I 14 I 7604 s cavPor3.scaffold_34 8622681 65 + 24440124 TACAGTAAATGTAAACTCCCAGTTGCAAAGTGTAATAGTGTGTAAAGTGTGCAGTGAA--TGTGCCA i cavPor3.scaffold_34 I 14 C 0 s oryCun2.chr14 21995801 67 - 163896628 AAATACAAATTTAAATCCCAAATTTTAAAGTTTGATCGTATATAGATTATATAGTGAATCTGTGCTA i oryCun2.chr14 I 2 C 0 s bosTau4.chr1 22915197 51 + 161106243 AAATATACATTTTGGTCTCTTGTTTTGAAGTCTGATGGTGT--------------GAA--TGTGCCC i bosTau4.chr1 I 2 C 0 s equCab2.chr26 28495349 63 - 41866177 AAATACATATTTCGGGCTCTTGTTTTAAAGTCTCATGGTCTGT--ATTGTACAGTGAA--TGCGCCA i equCab2.chr26 I 2 C 0 s canFam2.chr31 28142648 62 - 42263495 aaatataaattCTGGTCTCCTGTTTTGAAGTTTGATAGTGT-T--ATTGTACAGTGAA--TGTGCCA i canFam2.chr31 I 2 C 0 s loxAfr3.scaffold_13 41919004 57 + 62548349 AAAGGTAAATTGGGGTCTCCTGTTTCAAA--------GTGTGTGGGTTGTGTTGTGTA--CAGGCAT i loxAfr3.scaffold_13 I 2 C 0 e rn4.chr11 73446892 440 - 87759784 I a score=299524.000000 s hg19.chr4_gl000194_random 156768 136 + 191469 GTGGACAACAGTTGCTCATCAAGCAAG-TTTATACAAAAGCTTTCGGACAAGTCCAACTCTAGATAAAATTCTAAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTCCAAGGTAACCCACATATCAAAA s panTro2.chr4_random 3557312 136 + 6711082 GTGGACAACAGTTGCTCATCAAGCAAG-TTTATACAAAAGCTTTCGGACAAATCCAACTCTAGATAAAATTCGAAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTCCAAGGTAACCCACATATCAAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390239 136 + 202140232 GTGGACAACAGTTGCTCATCAAGCAAG-TTTATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATTCTAAAATATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTCCAAGGTAACCCACATATCAAAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 281463 136 + 189746636 ATGGACGATAGTTGCTCATCAAGTAAG-TTTATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATGGTAAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTCCAAGATAACCCACATCTCAAAA i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8622746 136 + 24440124 AAGGACAATAGTTGCTTATAAAACAAG-TTTGTGCCAAAGCTTTGGGAAAGGCCCCGGTCTAGGTGGAGTTATGAAATATTGGATGTTTCTAATCAGAGTTTCTTTCTCTCCCTCAGTAGCAACCCACATATCAAAA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21995868 135 - 163896628 ATAGACAACAGTTGCTTATCAAATAAGTTTTATGCAAAACCTTTGGGAGAGTTCAGGCTCCAGGCAAAATTGTGAAGTATTTGATGCTAT--GTGAAGATCTGTTTCTGTCCCTCAGAGGTAACCTACATTTTCAAA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22915248 120 + 161106243 ATGTACAACAGTTGTTTAATAAGCAAA-CTTATGCAAAAGCTTTGGGACAGGTCCAGCTCTATGTAAAGTTG------------ATCTTGTGTTCAGAGTTTTTCT----TCCTTAGAAGTAATTCACATATCAAAA i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28495412 116 - 41866177 GTGGATATCAGTTGCTTATTAA-TAAG-TTTATAAAAAAGCTTTGGGACAGGTCTAGCTCTAGATAAAGTTGTAAAGTACTTGAAGCTTGTG------------------GTTTCAGA-GAGATCTACATATCAAAA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28142710 136 - 42263495 ATGGACAACCATTGCTTATTAAGCAAG-TTTATGCAAAAGCTTTGGGACAGGTCCAGCTCTAGGTAACGTTGTAAAATATTTGATGCTTGCATTCAGAGTTTCTTTCTCTGTTTCAGACGTAACCCACATATCAACA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41919061 135 + 62548349 GTGGACAACAACTGTTCATTAAGCTAA-TTTACGTAAAAGCTTTGGGGCAAGTCTGGCTGTAGGTGAAGCTGTCAAGTATTTGGAGCTTGCGTTCAAAGT-TCTTTTTGTTCTTCAGAGGTAACCCAAGTATTAATA i loxAfr3.scaffold_13 C 0 I 125 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I a score=536896.000000 s hg19.chr4_gl000194_random 156904 391 + 191469 GACATATGGGT----------------------------------------------TGTGGGTAGAACTTCCTAAAATTGCTGGTGAGA-AGTGTGCCATGCATAAGCATACTTCACTAGCTTGAATTTT------------------------CTGTTAGTCTCACA------------GGCAACAATTACA-----ATCCTGTATGATTTTCTAACTCCACACACTCC-TGAACATAGAAAGACCAAGTAACATCCCTGGTTAAGATGTGTACAGGTTCCAAGACATG-------TCTAAATATATTCACCAAGAGGTTTATTATTTTCACAGTGGC------------ATTCACTAAATCAGTTGTCAGTGTAGCATTACTCAAGGAATAAGCA--------GGGTCTTTA--------ATTTATC---------AAAGTTTGGAGTGCACCCCAAGTTGGATCACT-----GAAGCACATAACTATA-GATAAGATCACTCAAAAGCACAAATCCAGGTAATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ s panTro2.chr4_random 3557448 391 + 6711082 GACATATGGGT----------------------------------------------TGTGGGTAGAACTTCCTAAAATTGCTGGTGAGA-AGTGTGCCATGCATAAGCATACTTCACTAGCTGGAATTTT------------------------CTGTTAGTCTCACA------------GGCAACAATTACA-----ATCCTGTATGTTTTTCTATCTCCACACACTCC-TGAACATAAAAAGACCAAGTAACATCTCTGGTTAAGATGTGTACAGGTTACAAGACATG-------TCTAAATATATTCACCAAGAGGTTTATTATTTTCACAGTGAC------------ATTCACTAAATCAGCTGTCAGTGTAGCATTACTCAAGGAATAAGCA--------GGGTCTTTA--------ATTTATC---------AAAGTTTGGAGTGTACCCCAAGTTGGATCACT-----GAAGCACATAACTATA-GATAAGGTCACTCAAAAGCAGAAATCCAGGTAATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390375 391 + 202140232 GACATATGGGT----------------------------------------------TGTGGGTAGAACTTCCTAAAATTGCTGGTGAGA-AGTGTGCCATGCATAAACATACTTCACTAGCTTGAATTTT------------------------CTATTAGTCTCACA------------GGCAACAGTTGCA-----ATCCTATATGTTGTTCTATCTCCACACACTCC-TGTACATAGAAAGAGCAAGTAACATCCCTGGTTAAGATGTGTACAGATTACAAGACATG-------ACCAAACATATTCACCAAGAGGTTTATTATTTTCACAGTGGC------------ATTCACTAAATCAGTTGTCAGTGTAGCAATACTCAAGGAATAAGCA--------GGGTCTTTA--------CTTTATC---------AAAGTTTGGAGTCCACCCCAAGTTAGATCACT-----GAAACACATAACTATA-GATAAGATCACTCAAAAGCACAAATCCAGGTTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 281599 392 + 189746636 GACATATGGGT----------------------------------------------TGTGGGTAGAACTTCCTAAAATTGCTGGTGGAA-AACGTGCCGCACATAAACATACTTTACTAGCTTGCA-TTT------------------------CTGTTGGTCTCACA------------GGCAACAATTGCA-----ATCCTGTATGTTGTTCTATCGCCACACACTCC-TGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGTGCAGGTCACAAGATATG-------TCTAAATATGTTCACCAAGAGGTTTATTATTTTCACAGTGGC------------ATTCACTACATCAGTTATCGATGTAACAATAATCAAGGAATAAGCA--------GGGAATAAAC------TCTTTATC---------AAAGTTTGGAGTCAATCCCAATTTAGATCACT-----GAAGCACATAACTATA-GATAAGGTCACTCAAAAGCACAAATCTAGGTTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8622882 426 + 24440124 GATAAATGGCT----------------------------------------------GTAGC--AGAGCTTTCTAAAATTGCTAA-GGGA-AATGAGCCATGCATTGA-AAATTTCACTTCTCTGATTTTCACTTCTCTGATTTTTTCACTTTCTCTGATAATTTTCTGATTAGTCTCCCAGGGAATAACTGCA-----ATCCTGCAGGTCACTGAATCTCTACATACTCT-TGTTCATAGCAAGACCAAGTAGCAAACCTGGTAAAACTGTGCCCAGGTTATAAGATATG-------TCTAAATGTCTTCACCAAGAGC--TCTTATTC--ACTGTGGC------------ATTCAATAATTCAGATCTCAGTGTATTAATAATTCAGGAATTAGCTACCTACTAGCAACTCTA--------CTTTATC---------AAAGTTTGGGACCAACATCAAGTTACATCATT-----ATAAAGTAGAACTCTA-GATTACATCACTCAAA-GTGGAAAACCAAGTTATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------ i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21996003 329 - 163896628 AATCTATAGGC----------------------------------------------TTAGC------------------------------------------------AACTTTACTGGTCTGAATTTC------------------------CTGTTAATTTAGTG------------GGCAACATTTGCAAACCTATCCTGCAAA-CACTTTATCTCTTCACCCTCT-TGTACATAAGAAGATCAAGGAAAATAACTAGT------------------TAAGATACACAAGCACTCTAAATATTTTCATGAAGGTG--CATTCTTCTTACTATGGC------------TTTCATTTTACCAGTTATAAATGTAGCAATATTTAA-----TAACT----------AACTCAA--------ATATATC---------AAAGTATGGGATTAATCTCAGGTGAGATCACT-----GGTGCACACAAGCATAGGAGGATCTCTCTCAAAGGCACAAAACTAGGTTGCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22915368 399 + 161106243 GATATATGCAC----------------------------------------------TGTGGGTAAAACCTCTCCAAATTGCTGGTGGGA-AATGTGCCTTGCATAAGCAAACCTCTGTAGCCAGCATTTC-----------------------------GATCTCATA------------GGCAACAAATACA-----ACAATGCAGGCTA-TCTATCTCTGCACACTTC-TGTACAAAGCAAGACCAAGGAATATGCCTGGTTAAGATGTGCCCAGCTTACAAGACGCA-------TTT--ATTTGTTACAAAAGAAATGTACTATTCTCACTATTGA------------ATTCAGTAAATCAAGTATTGATCTAACAAGAATCAATAAATAAGCA--------GAATCTTAACAAGTGTTCCTTATCAAGGCAAGTAAAGTTAGGGTTTAAACCTAAATTAGATAATT-----GGAACACACAACTATA-GAT-AGGGCAGTCAAAAGTACAGAATGAGGTTATCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28495528 404 - 41866177 GATATTTGGGC----------------------------------------------TGTGGGTAGAGCTTCTCAAAATTGCTGAAGGGG-AATGTGCCATGCATGAGCAAACCTCAGTAGCCTGCATTTC------------------------CTGTCAGTCTCAGG------------GAGAACAATTGTG-----ATGAGACAGGTCATTCTATCTCCACACACTCT-GGTACATAGCAAGACCAAGGAACACACCTGGTTAAGATGTGTCCAGGGGACAAGACAGA-------TTT--ATTTATTA-GCAAGATATTTATTATTCTTACTGTGGA------------ATTCAGTAAATCAATTATTGGTGTAGCAATAATCAAGAGATAAGCA--------GACTCTTAACAACTCTACCTTATCAAGGCAAG-AAAATTCGGGGTCAACCCCAAATTACATCATT-----GGAATATACAAGTATA-GATAAGGGAACTCAAAAGCACTAAACCAGGTTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i equCab2.chr26 C 0 C 0 s canFam2.chr31 28142846 384 - 42263495 GATAAATGAGG----------------------------------------------TGTGGTCAGAGCTTCCCAAAATTGCTGGTGGGA-AGTGTTTCATGCATAAGCACACCTCAGTAGCCTGCATCTC------------------------CCATGAACTTCTTG------------GGCAAAAACTATA-----ACTGTGCAGTTCATTCTGTTTCTACCCACTCT-TATACATAGCAAGACTAAGGAACACAGTTGGCTAAGATGTGTCTAGTTTACAAGATATG-------TTT--ATTTATTA--CAGGAAGTTAATTATTCTTACTGTGAA------------ATTCAGTAAATC-ATTACTGGTATAACAATAATCAAGAAATAAGCA--------AAGTCTTAACAACTCCACCTTA-------------------GGGTAAACCACAAGTTAGTTCACT-----GGAACATATAGCAATA-AATAAGAGCACTTCAAGGCACAAGACCAATTTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------ i canFam2.chr31 C 0 I 343 s loxAfr3.scaffold_13 41919321 625 + 62548349 gaccttttggttagcagccatagcacttagccactatgccaccagggtttccaTGTCTGTAAATAGAGCTTCTCAAATATGCTGAGAGAACAATGTGCCAGACATAAGAAAACATCTCTTGCCTTCATCAG------------------------CCATCTGCAGCACA------------GGTAACAATTTCA-----GTACTACAGGACATAATATCTCCTCATACTCCTTGTACATAGAAAGACC-GGGAACATACATGGTTACCATATGTCCAGGTTAAGAGATACG-------TAT---------CAGCAGGAAGTCTGTTACCCTCACTGTGGCATCAAGGTAGCAATTTAGTAAATAAGTTGCTAGTGCAACAATACATAAGCAATAAGCA--------TGACCTTAACAGCTTTACATTATCATGGTAATAAAAAGCTGGGGTCAAGCCGAAGTTAGATCCCTACAGCAAAGCACACACCTATA-AATAAGAGCATTTAAAGGCACAAAATCAATTTATaaacccattgccatcaagtcaattccaagtcatagcatccctataggacagagtagtactgccccatatagtttccaggaagcagctggtggatttgaactgccgatcttctggttagcagccaagctcttaacctctgtgccaccaggactcctaGTTTATAAA i loxAfr3.scaffold_13 I 125 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I a score=269818.000000 s hg19.chr4_gl000194_random 157295 165 + 191469 TA-TTCACTAGTAGTTTATATGCATTTAGCAATTTGAATGCTGGGAAGTGTAGCCCAGAAA-ATCAATCGACATGGAGCTATTAAAGAGGCATTCATGGCACCT---GCAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGAGACATGTTAGCTCATGTATAGTGCAAA s panTro2.chr4_random 3557839 165 + 6711082 TA-TTCACTAGTAGTTTATATGCATTTAGCAATATCAATGCTGGGAAGTGTAGCCCAGAAA-ATCAATCGACATGGAGCTATTAAAGAGGCATTCATGGCACCT---GCAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGAGACACGGTAGCTCATGTATACTGCAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390766 165 + 202140232 TA-TTCAGTAGTAGTTTATATGCATTTAGCAATTTGAATGCTGGGAAGTGTAGCCCAGAAA-ATCAATCGACATGGAACTATTAAAGAGGCATGCATGGCACCT---GCAC---TTTGAATCTCTT--CAGACTCAGGTTAAACATGAGATACGGTAGCTCATGTATACTGCAAT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 281991 165 + 189746636 TA-TTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAGCCCAGAAA-ATCAACAGACATGGAACTATTAAAGAGGCGTGCATGGCACCT---GCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGAGACACGGTGTCTCATGTATACCGCAAT i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8623308 155 + 24440124 TATTTCGGTGGTTCTTTTTATTTACTGAGTAGCCTCA-ACAGTGAAATCAAAGCTCAGAAA-ATTAATTGATGTGTAACTATTGAAGATGTGTACATAATACTT---GTAC---TCTG----TAAT--CAGACCGAA--TCAGCAA-AGACAAGGTGGCTTATGTTTCCT---AC i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 21996332 166 - 163896628 TA-TTCAGTAGTATTTTCTGTACATTTAACAGTCTAAGACTTGGAAATTGAAGCCCAGAAACACCAAGAGATATGGAATTGTTTAAGATGCACACATGGCAATT---GTAC---TTTGAAGCTGTT--CACACTAACATTCAGCAACAGACAAGGTAGTCCTTGTATCCCTTAAC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22915767 156 + 161106243 AA-TTCAGTAGTATTTTCTCTACACTTAGTAACTTTAGCAGCGGAAAGTTTAGCCCAGA--------TATATCTGGAACTGTTGACGAGGCATAAATAACAATA---GCAC---TTTGCATCTATT--TAGCTTTGGATTAAGCAGAAGGCCAGGTAGCCTATTTATCCTGCA-- i bosTau4.chr1 C 0 I 618 s equCab2.chr26 28495932 167 - 41866177 TA-TTCAGTGGTATTTGCTATAACTGTAGCAGCCTTAGCAGCGGAAGGTGCAGCCCAGAAT-ACTAATAAATATGGAAGTGTTCAAGAGGTGTGAATGGTACTACCTGTTC---TTTGAATCT-TT--CAGACTGAGGTTAAGCAGGAGGCTAGGTAGCCCATTTATCCCACACC i equCab2.chr26 C 0 C 0 s canFam2.chr31 28143573 165 - 42263495 TA-TTCAGTGGTATTTCCTATACATTTAGCGGTCCTAGCTGTGGAAGGTACAGCCCAGAAA-ATCATTAAATTTGGGATTGTTGAAGAGGCATGAATAGCAATA---GCAC---ATTGGATGTGTT--CAGACTCAGGTTAAGCAGGATGTTGGATAGTCCATTTATCCTGCACC i canFam2.chr31 I 343 C 0 s loxAfr3.scaffold_13 41919946 143 + 62548349 TA-TTCAATGGTAGTTTCAATTCATTTAATAGCTTGAAGAGTGGAAGCTGCAGCCTAGAAG-ATCAATAAGTATGGAACTGTTCAAGAAGCACAAATGGTACCT---GCACTTTTTTGAGTCTATTTGTAGATTCAGGTTAAGATGGA--------------------------- i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I a score=89236.000000 s hg19.chr4_gl000194_random 157460 44 + 191469 AACCCGTCCTCTTTCCCTTTTTATCTATGGACCTGCCCTTTTCA s panTro2.chr4_random 3558004 44 + 6711082 AACCCTTCCTCTGTCCCTTTTTATCTATGAACCTGCCCTTTTCA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390931 44 + 202140232 AACCCTTCCTCATTGCCTTTTTATCTACGAACCTGCCCTTTTCA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 282156 44 + 189746636 AACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCA i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8623463 43 + 24440124 AACTCTTTGTTGTTA-TTTTTAGTCTATGAATTTATCTATTTTA i cavPor3.scaffold_34 C 0 I 974 s oryCun2.chr14 21996498 43 - 163896628 AAACCAGCCTCCTTG-CTTTTTATCTATGAACTCACCCCTTTTC i oryCun2.chr14 C 0 I 2 s bosTau4.chr1 22916541 44 + 161106243 AACCCTTTATTATTGCGTTTTTATCTATGGACTCTCCCATTTCA i bosTau4.chr1 I 618 C 0 s equCab2.chr26 28496099 43 - 41866177 AACCCTTCATCATTG-TTTTTTGTCTATCGACTCTCCCTTTTCA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28143738 44 - 42263495 AACATTTCATCATTGCCTTTTTATCTATGGATTCTCTCTTTTCA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41920089 44 + 62548349 ATTCCTCAGTCATTGTCTTTTCACCTGTGGACTCTCACTTTTCA i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I a score=516119.000000 s hg19.chr4_gl000194_random 157504 344 + 191469 ATGTTATCTAGATGCCTGAAGGTATGAATACCCTTGATCTTGGTAAAAAATGGTACCACCCGTCAGCAAAATCTCACTGATCAGTGTCTATGTTACCTCACTGAGTTAGCCTTTTGTGTTGTTGTGGCCCAGAATGACAATGTTGACACAATCCAAACCAGTAGTTGGGAAGTTAATGTTGGATGCATCTTTGACAATTGATGGAATGACCTGAAATCAAATGTGAGGCAGTGGAGACACAAGAATGCTATTCAGGAAGTTAGTGATCTGTGGAGATACTAAATGAAATATCTGGAAGGAAATGTAATCTTGCAACTATGCTTTTATGTGT-TTTTTGACATAAA s panTro2.chr4_random 3558048 342 + 6711082 ATGTTATCTAGATGCCTGAAGGTATGAATACCCTTGATCTTGGTAAAAAATGGTACCACCCATCAGCAAAATCTCACTGATTAGTGTC--TGTTACCTCACTGAGTTAGCCTTTTGTGTTGTTGTGGCCCAGAATGACAATGTTGACACAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCGGCTTTGACAATTGATGGAATGACCTGAAATCAAATGTGAGGCAGTGGAGACACAAGAATGCTATTCAGGAAGTTAGTGATCTGTGGAGGTACTAAATGAAATATCTGGAAGGAATTGTAATCTTGCAACTATGCTTTTATGTGT-TTTTTGACATAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42390975 344 + 202140232 ATGTTATCTAGATGCCTGAAGGTATGAATACCCTTGATCTTCGTAAAAAATGGTACCACCTGTCAGCAAAATCTCACTGATCAGTGTCTATGTTACCTCACTGAGTTAGCCTTTTGTGTTGTTGTGGCCCAGGATGACAATGTTGACACAATCCAAACCAGTAGTTGGAAAGTTAGTGTTGGATGCGTCTTTGACAATTGATGGAATGACCTAAAATCAAATGTGAGGCAGTGGAGACTCAAGAATGCTATTTGGGCAGTTAGTGATCTGTGGAGATACTAAATGAAATATCTGGAAGGAATTGTAATCTTGCAGCTATGCTTTTATGTGT-TTTTTGACATAAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 282200 344 + 189746636 GTGTTATCTAGATGTCTGAAGGTATGAATACCCTTGATCTTGGTAAAAAATGGTGCCACCCCTCAGCAAAATGTCACCGATTGGTGTCTATGTCACCTCACTGAGTTAGCCTTTTGTGTTGTTGTGGCCCCGAATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGAGGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGACACTACGTGAAATATCTAGAAGAGACTGTAATCTTGCAACTATGCTTGTATGTGT-TTTTTGACATAAA i rheMac2.chr2 C 0 I 1 s oryCun2.chr14 21996543 313 - 163896628 GTGTTATCTTGATGGTTGTTAATCTGATTGCTCTTGGTGCTGGAGGAAAAAGATAATATGTGTTGACAAGACTTCACTGACCAGCATGTGTATTACCTGACTGAGTGAACCTTTACTG-----GATGCTCAGCATGACAATGGTGACATAA---ACAGCAGCGGTTGGGTATCCACTGCTT--TGCTTCCCTGACAATTGATGGAATGACCTGGAACCAAGTGTGAACACATGAAAATTCAAGAAGTCTGT----ACAGTTAGTGACCAGTGGAGATACTAACTCCAGTATCTGCTGATAGATGTGATC-----------CTCAAATGTGA-TTTATGA------ i oryCun2.chr14 I 2 C 0 s bosTau4.chr1 22916585 336 + 161106243 GTGTTCTCTAGGTGGTTGTAGGTATGGCTGCCTTTGGCGTTGGTAGAATATGGTGTCATATATAAGCAAGAGTTCACTGGCCAGCGCCTGCATCACATCAATGAGTGAGACCCAT---TTTTTGTTGCTCAAGATGGC-ATGGTGACATTACATGAATCAGTAGTTAGGACACTAATGTAAGAAGCTTATATAACAACTCACAGAATGA--TGGAATTAAATGTGAACAGGTGAATATACAGGAAAGCTGATCAGACAATTCATTATCAGTAGAGGTAATAAGTGAAATATCTGGG---AGATATGATCTTACAACTGTGCTTTTATGGGGATTCTTCTCATAAA i bosTau4.chr1 C 0 I 7 s equCab2.chr26 28496142 325 - 41866177 GTACTCTCTAGATTGATGCAGGTATGGCTGCCTTTGGTGTTGGTGGAAAATGGTACCA--------------TTCACTGGCCAGTGTCTATATCACCTCACTGAGTGACCCCCAT---TTTTTGTTGCTCAAGATGACAATGGTGACATAATTGAAAGCAGTCGTTGGGAAGTTAATGTAACATGCTTCTATAGTAACTGATGGAATGACTTGGGATAAAATGTAAACAAGTGAAGACTC--GAGAGCTGTTCAGACAGTTTGTGATCTGTAGAGATACTAAGTTAAATATCCAGAGGTGGTTATGATCTTTCAACTGTGCATTTACGTGG-TTATTGTCATAAA i equCab2.chr26 C 0 I 3 s canFam2.chr31 28143782 332 - 42263495 ATGTTCTCTACATGGCTGTAGATATGGCTGCTCTTGGTGCGGGTGTAAAATGGTGTCATATAAACACAAGACTTAACTGACCAGTGTGTATACCACCTCACTGAGTGAGTTCTAT---TTTTTGTTGTTCAGGA--GCAATAGTAACATAACAAAAAGTGGTAGTTGGGAAATTAATGTAAGATGCTTCTGGAACAATAGAGTGAATGA--TAAAATCAAATGT-AACAAGCAGAGATGCAAGAAAGCTGTTCAGAACATTCGTGACCTGTGGAAATATTAAGTGTAATATCTGGA---AGTTGTGACCTTGCAACT-TTCCTTAAAGTGG-TCATTGCTATAAA i canFam2.chr31 C 0 I 8 s loxAfr3.scaffold_13 41920133 329 + 62548349 ATTTTCTCTAGATGGCTATAGGTATGACTGC-CTTGGTTTTGGTAGGAAATGGTGCCATAGATAAGCAAGATTTCACTGGCCATCCTTTACATCATCACATTGGGTGAACCCCT----TTTTTGCTG-TCGAGATGGCAGTGGTGACGTGATACAAAGCAGTAGGTAGGAAGTTAATGT-AGATG-TGCTGTGATGACTGACAGAATGATCTGAAATCAAATGGGAACACGTGATGATTTGAGAAAGCTGTTCAGACAGCCAAT-ATCTG------AAATAAGTGAAATATTTGAAAGTGGTTTTATTTTTGCAAAAGTGCTTTTATGTCA-TTCTTGTCATGAA i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I a score=76285.000000 s hg19.chr4_gl000194_random 157848 65 + 191469 ---CAGTTTCTATTTATGGTGGAGCTAGAGTGTCCATTTCCCATGAAGTTCCCTTAGTGTTAACTAA-T s ponAbe2.chr3 42391319 65 + 202140232 ---CAGTTTCTATTTATGATGGAGCGGCAGAGTCCATTTCCCATGAAGTTCCCACAGTGTTAACTAA-T i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3558390 65 + 6711082 ---CAGTTTCTATTTATGGTGGAGCTAGATTGTCCATTTCCCATGAAGTTCCCATAGTGTTAACTAA-T i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21996856 60 - 163896628 --------TTTATTTATGATGGAGCTCTGGTGCCCATTTCCCATGAAGTTTACACAGTATTAGCTGA-T i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22916928 65 + 161106243 ---TTGTTTCTATTTGTGATGGACCTCTAGTGACCATTTCCCATAAAGTTCCCATAATATTATCTTAT- i bosTau4.chr1 I 7 C 0 s equCab2.chr26 28496470 63 - 41866177 ---TTATTTCTATTTGTGGTGGTGCTATGGTGTCCATTTCCCATGAAGTT-CCATAGTATTGTCCAA-- i equCab2.chr26 I 3 C 0 s canFam2.chr31 28144122 53 - 42263495 ---TTTTTTCTGATTGTGATGGAGATATAGTGTCCATTTC-----------CTATAGTAATATCTCA-- i canFam2.chr31 I 8 C 0 s loxAfr3.scaffold_13 41920462 68 + 62548349 AAATTATTTATATCTGTGATGGCGCTATAGTACCCACTTCCCATGAAATTCCCATAGCTTTACCTAA-T i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e rheMac2.chr2 282544 1 + 189746636 I a score=97187.000000 s hg19.chr4_gl000194_random 157913 376 + 191469 Acagtcatgtgtcacttaatgacaggggtgtgtctgagaaatgcattgctggacgattttattattgtgtgaacatcacagagtttacttacacaaacctagatgctatagctgattacatatctaggttaggtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcaattgtaacacaacagttaagtatatctatacttacttatatctatacagtaagtgtatctatacatgtctaaacatacaagaggtacagtaaaagtacagcgttatgattttattgcaccactgtcatacatgtgcactatccttgaccaaaatgttgttatgtgatgcatgattg s ponAbe2.chr3 42391384 373 + 202140232 Acagtcatgtgtcacttaatgacaggggtatgtctgagaaatgcattcctggacaattttattattgtatgaacatcgcagagtttacttacacaaacctagatgctatagctgattacatacctaggttatgtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcaattgtaacacaacagttaagtatatctatacttacttatatctatacagtaagtgtatctatacatgtctaaacatagaagaggtacagtaaaaatacaatgttatgattttattgctcaactgtcatatatgtgcaccattcttgaccaaaa---tgttacgtgatgcatgactg i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3558455 376 + 6711082 Acagtcatgtgtcatttaatgacaggggtgtgtctgagaaatgcattgctggacaattttattattgtatgaacatcacagagtttacttacacaaacctagatgctatagctgattacatatctaggttaggtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcaattgtaacacaacagttaagtatatctatacttacttatatctatacagtaagtgtatctacacatgtctaaacatacaagaggtacagtacaaatacagtgttatgatttttttgcaccactgtcatagaagtgcactatccttgaccaaaatgttgttatgtgatgcatgattg i panTro2.chr4_random C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e bosTau4.chr1 22916993 0 + 161106243 C e loxAfr3.scaffold_13 41920530 0 + 62548349 C e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21996916 0 - 163896628 C e canFam2.chr31 28144175 0 - 42263495 C e equCab2.chr26 28496533 0 - 41866177 C e rheMac2.chr2 282544 1 + 189746636 I a score=273985.000000 s hg19.chr4_gl000194_random 158289 250 + 191469 TAACAAAAGAATTAATTAAATATAATATTGAAGTGCCTA-TTGAGATTT---CAATGAAGAGAG--GAATATTTGTAAATTCTGATTACCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCATGGCTGTTCTTGTGAAAGAGCATAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATTGCCTGCATTATGAAGGTCACCTGGTATCAAATGAGGCAAAATGGTAGATTATAAAGACCTGTA s equCab2.chr26 28496533 232 - 41866177 TAATGAAGGAATTAATTAACTATAGTGTTGAAGGGCCCA-TTGTGATTT---CAACAACAAAAA-------------------AATCACCTGAAATGGGAATTGACTTTCTTCCTGCTCTCATGGTTGTTCTCTTGAAATGCTGCAGCTTCCTGAGCACCTGGAATCTCTGATAAATCCTAGAATTCCCTACTG-CTACATAATAAAGGTCACCTGGTATCAAAGGAGGCAAAATATTAGGTTATAAGGAGATGTA i equCab2.chr26 C 0 I 4 s canFam2.chr31 28144175 243 - 42263495 TAATGAAGGAATTAATAAATAATAGTACTGAAGTGCCCA-CCGGGATTT---CAACAAATGAAAGATGTGTTTGTTAAATTCTGATCACCTGAAGAGGGAA-----TTCCTTCCTTCTCACATAACTGTTC---TGAAATGCTGCAGCTGCCCAGGAATGTAGAATGTCTGATATATCTTGGTATTCTCTAGTA-CTGAAAAATGAGGATCACCTGGTGTCAAATGAGGCAAATTTTTATGTTACAAAAACAGGTA i canFam2.chr31 C 0 I 124 s ponAbe2.chr3 42391757 246 + 202140232 TAACAAAAG----AATTAAGGATAATATTGAAGTGCCTA-TTAAGATTT---CAATGAAGAAAG--GAATATTTGTAAATTCTGATTACCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCTTGGCTGTTCCCGTGAAAGAGCACAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATTGCCTGCATTATGAAGGTCACCTGGTACCAAATCAGGCAAAATGGTAGATTAGGAAGACCTGTA i ponAbe2.chr3 C 0 I 4 s panTro2.chr4_random 3558831 250 + 6711082 TAACAAAAGAATTAATTAAATATAATATCGAAGTGCCTA-TTGAGATTT---CAATGAAGAAAG--GAATATTTGTAAATTCTGATTACCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCATGGCTGTTCTTGTGAAAGAGCATAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATAGGCTGCATTATGAAGGTCACCTGGTATCAAAAGGGGCAAAATCGTAGATTATAAAGACCTGTA i panTro2.chr4_random C 0 I 4 s loxAfr3.scaffold_13 41920530 245 + 62548349 -----AAAGGATTAATTAATGGTAATATTGAAGTGCCCA-CTGAGGTCT---CAACAAAGTCAAGATGTGTTTGCTGAATTTGGATCATGTGAAATAGGAGCTGACTTCCTTCTTGCT--CATGGTTTTTCTTTTGAAATGCTGCAGCTTTGTGAGAACCTGGAATCTCTGATAAGCCTCGGGATTTTCTATTGCTTGCACAATGAAGATTACTTGGTATCAAATGAGGCAAAAAAATAGATGATAAGAATATGTA i loxAfr3.scaffold_13 C 0 C 0 s oryCun2.chr14 21996916 246 - 163896628 -----AAGGAAATAATCAGA-ATATTAGTGAAGTGTCTAGTTGAGATGTCCCCATTGCAAGGAG--GTGTTTTCTTGAATTCTGATTCTCTGAAATGGTGATTGACTTCGTTCCTGCTCTCATAACTGCTCCCTTTGGATACTACCGTTTCCCAAGGACCTGAAG--TCTGAAAGATCTAGCAATTTTCTGTTTTCTGCCTCACAAAAATTATGTAGTACCAAATGCTGCAGAATATTAGACTATGAGGACACACA i oryCun2.chr14 C 0 I 4 s bosTau4.chr1 22916993 236 + 161106243 -----AATGAAATAATTAATGATAGCACTGAAGTGCCCA-TTGCAAATT---CAACAAAGGAAG--GGTGCTTGCTAAGTTCTGATTACCTGAAATGAGAGTTGACTTTCTTTCTTCCTTCATGGCTACCT-CTTGAAATGT--CAGCTTCCTGAGAAACTGGAATCTC--ACACATTCTAGAATTCTCTATTG-CTGCCTAAT---GGTTACCTGTTGTCAAATAAGATAAAATTTTGCATTTTAAGAGTGTGCA i bosTau4.chr1 C 0 I 4 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e rheMac2.chr2 282544 1 + 189746636 I a score=116599.000000 s hg19.chr4_gl000194_random 158539 118 + 191469 CTTGTCAGTTCCTAAACATAGCAAGCCTTGGTCTATCTTGAACATTTCT--GCAGTTATAA---ATGAGCCTTGGGTCATGA-TTTTCTGCCTTTTTATCATA---GACAAGATTTAATTTA------GGAGA-- s ponAbe2.chr3 42392007 118 + 202140232 CTTCTCAGTTCCTGAACATAGCAAGCATTGGTCTGCCTTGAACATTTCT--GCAGTTATAA---ACTAGCCTTGGATCATGA-TTTTCTGCCTTTTTATCGTA---GACAAGATTTAATTTA------GGAGA-- i ponAbe2.chr3 I 4 C 0 s panTro2.chr4_random 3559085 119 + 6711082 CTTGTCAGTTCCTAAACATAGCAAGCCTTGGTCTATCTTGAACATTTCT--GCAGTTATAA---ATGAGCCTTGGGTCATGATTTTTCTGCCTTTTTATCATA---GACAAGATTTAATTTA------GGAGA-- i panTro2.chr4_random I 4 C 0 s oryCun2.chr14 21997166 99 - 163896628 CATGTTTCTCTCTCAGTGCTGCTAGTATTGGCATGTCTTAAACATTTCTGGGTTATTATGA---ACTAACCTTGAGTTATGA-TTTTCTACTAATGTATCACA-------------------------------- i oryCun2.chr14 I 4 I 1862 s bosTau4.chr1 22917233 124 + 161106243 CTTTTTAATCTCTAAACAGAGGAGGCATTGATCTCTCTTGAGTGTTTTG--GCAGTCATTATGGACTAAGCTTGGGTCATGA-CTTTGTGGCTATTTATCATGAAAGACAATGCTTGATTTG------AGGAA-- i bosTau4.chr1 I 4 C 0 s equCab2.chr26 28496769 113 - 41866177 CTTGTTAATCCCTAAATAGAGCAGGCATTGGTCTGTTTTGAATGCTTCT--GCAGTTAATA-----------TGGGTCATAT-TTTTCTGCCTCTTTATCTGAAAAAACAGGATTTAGTTTG------GAAGA-- i equCab2.chr26 I 4 C 0 s canFam2.chr31 28144542 123 - 42263495 CTTGTTAACCCCTAAATAGAGCAGGCATTAGTTTGTCTTGAATATTTCT--GCAGTTATTATGGACTAAACTTGGGTCATTA-TTTTCTGCCTACTTATCGTAGAAGACA-TATTTAGTTTG------GGAAA-- i canFam2.chr31 I 124 I 398 s loxAfr3.scaffold_13 41920775 129 + 62548349 CTTGTTTCTGTCTAAACAGAAAAGGCTTTAGTGTGTCTCGAAGCTTTCT--GTAGTTGTTACGGACTGACCTTGGGTGATGA-TTTTCTCCCTATTTACCata---aattttttttttttttttCATCATAGAGT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e rheMac2.chr2 282544 1 + 189746636 I a score=48097.000000 s hg19.chr4_gl000194_random 158657 26 + 191469 TGTCCTTTTAATGTGTAATGTGAATA s ponAbe2.chr3 42392125 26 + 202140232 TGTCCTTTTAATGTGTAATGTGAATA i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3559204 26 + 6711082 TGTCCTTTTAATGAGTAATGTGAATA i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 21999127 26 - 163896628 TGTCCTTTTAATATGTGATATGCata i oryCun2.chr14 I 1862 I 25 s bosTau4.chr1 22917357 26 + 161106243 TGTTGTTTTGATATATCATGTGGATA i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28496882 26 - 41866177 TATTCTTTTAATATGTGATGTGAATA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28145063 26 - 42263495 TGTTCTTTTAATATGTGATGTGAATT i canFam2.chr31 I 398 C 0 s loxAfr3.scaffold_13 41920904 26 + 62548349 TGTTCTTTCAATGTGTGGTATGAATA i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e rheMac2.chr2 282544 1 + 189746636 I a score=219497.000000 s hg19.chr4_gl000194_random 158683 363 + 191469 G-TAAGTGACACTTATGAAG-CCT-ATTTTCTTCCAGCCATTTTAATTG-----TCAAAT-CTGTCCAGTCAAGATGCATTGTTAGAGGCTT-CACTGACAACACCGTC----TG--TGTGTGTGGCTGTGTGTGTGTGTATACATACATATGATTGTGCAGGATTTATTGTAAGTCAAAACAGTCTCAAATTTCTTTGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCTGAGTTGAGGAGCTGGTGATGTGTATTTCTCTTGCATGTTC-TCCACATTATCCCTATGCAGGTCTTCCATGGGCTTGGTTTTGG-AACCAGTGATGAGGAAGATCACTAGAATTGTTGTTGT-CAAAAAGATTCCT----------CCATTCTTCT------------ s ponAbe2.chr3 42392151 370 + 202140232 G-TAAGTGCCACTTATGAAG-CCCAATTTTCTTCTAGCCATTTTAATTA-----TCAAAT-CTGCCCAGTCAAGATGCATTGTTAGAGGCTT-CACTGACAACACCGTCtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtATACATACGTATGATTGAGCAGGATTTAATGTAAGTCAAAACAGTCTCAAGTTTCTCAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCTGGGTTGAGGAGCTGGTGATGTGTATTTCTTTTGCATGTTC-TCCACATTATCCCTATGCAGGCCTTCCTTGGGCTTGGTTTTGG-AACCAGTGATGAGGAATATCATTAGAATTGTTGTGCT-CAAAAGGATTCCT----------CCATTCTTCT------------ i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3559230 367 + 6711082 G-TAAGTGACACTTATGAAG-CCT-ATTTTCTTCCAGCCATTTTAATTG-----TCAAAT-CTGTCCAGTCAAGATGCAATGTTAGAGGCTT-CACTGACAACACCGTCtgtgtg--tgtgtgtgtgtgtgtgtgtgtgtATACATACATATGATTGAGCAGGATTTATTGTAAGTCAAAACAGTCTCAAATTTCTTAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCTGAGTTGAGGAGCTGGTGATGTGTATTTCTTTTGCATATTC-TCCACATTATCGCTATGCAGGCCTTCCATGGGCTTGGTTTTGG-AACCAGTGATGAGGAAGATCATTAGAATTGTTGTTCT-CAAAAAGATTCCT----------CCATTCTTCT------------ i panTro2.chr4_random C 0 C 0 s bosTau4.chr1 22917383 295 + 161106243 GTTAAGTACCATTTGTGAGA--------GTCTTTCAGTCATTTTAATTG-----TTAAATTTGGTGTAACCAAGAGGCATGGTTAGAGGCCT-------------------------------------------------------TTACTAGCAA--CACTATAGCATAG-----AGATCTCTATCTATGATTGG--------GCAGGG-TTTTAGCCTTTCTCCTAGATTTCTGGGTTGGGGAGCTGGGGATGTGTATTTCTTTTACA--TCTTTCCAAATAACCTTTATGTATGTTTTCCATGGGCTTACATTTGCAAACAACTGATGAAGGAAATAATTAGAATTTCTATGTT-CAGGAAGATTTCT----------ACACCTTTTC------------ i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28496908 322 - 41866177 G-TATGTGCAATGTGTGAGT------TTATCTTCCAGCCATTTTAATTGTCAAATCCAATGCtatatagata-gatatacatacagacatct------------------------------------------------atacatatatatGATGCAGCACGATGTAATGTAATTCACAGCAGTCTCAAAACTGTTAGGACA--ACAGGC-CTTTGGCCTTTCCCTTAGAGCTCTGGTCTGGGGAGCTGGGGATATGCATTTCTTTTGCATGTTCTTCTGGAACATTCTTATGTGGATTTTCCATGGGCTTGCATTTGGGAACCTTTAATGAAAAAAATCATAAGAATTCCTATGCCGCAGC-AGACTCCT----------CCATTCTTTC------------ i equCab2.chr26 C 0 C 0 s canFam2.chr31 28145089 309 - 42263495 G-TAAATGCCATTTGTAAAGGTCT-ACTACCTTCCAGTCATTTTAATTG-----CCTAATTCTGGGTAGTCAGGAAGCACAGTTAGAGGCCT-------------------------------------------------------TCTTTGATGT--CATTATATAGATATAGACAGATAACTATCAATATTTTGTGATTA--GTAAGTATTTTGACCTTTCTTCTAGGTTTCTGGGTTGGGGAGCTGGGCTTATGTATTTCTTTCACATGTCCTTCCAAATTATACTTATGCAGATTTTCCAGTG--TTGCATTTGGCAAACACTGATG---GAGATTATTAGAATTGCTATGCT-CAGG-AAATTCTT----------CCATTCTTCC------------ i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41920930 350 + 62548349 G-TAAGTGCCATTTAT----------CTTTCTTCCAGCCATTTTAATTG-----TCAAATCTGGTACAATCAAGAAGCATTGTCACAGGCCTTCACTGACGAGACC------------------------------------ATATACATGTGATTGGGCAGGGTGTAATCTAACTCATCGTGGTCCCAAATCTGTTAAAACGATAGAGTTTCCTTGGCC-TTGCCCTAGAGCTCTGGGTTGCAGAGCTGGAGATATGTGTTTCTTTTACATGTCCCTTCAGATTATCCTTATGTTGACTTTCCATGAGCTTGCATTTTGGAGTCACCGATGTGGGAAATCATTAGAATTGCAATGCT-CAAAAAGAGTCATAAAAGCAATGACAATTTGCTCAAAAAGAGTCC i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I e rheMac2.chr2 282544 1 + 189746636 I a score=217947.000000 s hg19.chr4_gl000194_random 159046 183 + 191469 GTATAAGCAATGGCAATTTTCCCTGACCAATATTTCTTCTTTTGAAATGGTAAATTTTGAAT--------------------ATTAACTGAT-TAGT----ATAATCC-CATAAAATAACAAAGTTTGAGCCCTATGATCTGTATTTTAGGCTAAAGTTGTGTTTTATGCTAAATCATCATTTACTCCATGTATGATCtttt-ttttttt s panTro2.chr4_random 3559597 175 + 6711082 GTATAAGCAATGGCAATTTTCCCAGACCAATATTTCTTCTTTTGAAATGGTAAATTTTGAAT--------------------ATTAACTGGT-TAGT----ATAATCC-CATAAAATAACAAAGTTTGAGCCCTATGATCTGTGTTTTAGGCTAAAGTTGTGTTTTATGCTAAATCATCATTTACTCCTTGTATGATC---------ttt i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42392521 172 + 202140232 GTATAAGCAATGGCAATTTTCCCAGACCAATATTTCTTCTTTTGAAAT-GTAAATTTTGAAT--------------------ATTAACTGGT-TAGT----ATAATCC-CATAAAATAACAAAGTTTGAGTCCTGTGAACTGTGTTTTATGCTAAAGTTGTGTTTTATGCTAAATCATCATTTACTCCTTGTATGATTT----------- i ponAbe2.chr3 C 0 I 365 s rheMac2.chr2 282545 183 + 189746636 GTATAAGCAATGGCAGTTTTCCAAGACCAATATTTTTTCTTTTGAAACAGTAAATTTTGAAG--------------------ATTAACTGGT-TAGT----ATAATCC-CATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCTAAAGTTGTGTTTTATGCTAAATCATCATTTACTCCTTGTATCAtttttc-ttttttt i rheMac2.chr2 I 1 I 158 s bosTau4.chr1 22917678 181 + 161106243 ATATATACAATGGTAATTTTCCCAGACCAATG-TCCAATTTTTGAAACTGTAAATTTTGGGA--------------------ACTGACTAAA-GAGT----GTAAATC-CCTAAGGCAATAATGTCTGACTTAGGTGAACTGTGTTTTATGCTAAGGTTGTA-CAGGCTCTTAATCACCATTTACTCATTTTCTGGTCCTTTGTTTCCT- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28497230 174 - 41866177 ATGTATGCAAGGGTAATTCTTCCAGACCAACG-TTCTGCTTTTGAAATTGTAAATTTTGAAT--------------------ACTGACTGAT-AAGT----GTAATCC-TATAAAGTAACAAAGTTTAACTCAGGTGAACTGTGTGTCGTGCTAAAGTTGTA-CAGACTCTGAATCACCATTCACTACTCTTATGATCTTTT-------- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28145398 175 - 42263495 ATACATACAATAATAACTTTCCTAGTCCAATG-TTCTGTTTTTGAAATTGTAAAATTTAAAT--------------------ATCGACTGAT-TAGTTTACTTACTCC-CTTAAAATAACAAAGTTTGACCTAAGTGAGTTGTGTTTTATGCTAAAGTTGTA-CAGACTCTGCATCACTGTCCACTTCTCATATGGTCT----------- i canFam2.chr31 C 0 I 12 s loxAfr3.scaffold_13 41921280 191 + 62548349 ATAAAAGCAATGACAATTTGCCCAGGCCAATGTTTCTGCTTTCAAA---GtaaattttaaatattaaaaattaaCTCATGGGATTAACTGATAAAGT----ATAATCTATGTAAAATAACAAAGTTCAACTCAGGTATACTGTGTTCTACTCTTAAGTTGCA-CAGAGTGTGATTCACCATTCACTTCTC-TATGGTCTT---------- i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=18802.000000 s hg19.chr4_gl000194_random 159229 93 + 191469 tttttttttga----gacagagtct------cacactgtca-ctcaggctggagtgcagtggc-----------acaattttggcttactgca---agctccgcctcccaggtgcaca s panTro2.chr4_random 3559772 93 + 6711082 tgtttttttga----gacagagtct------cacactgtca-ctcaggctggagtgcagtggc-----------acaattttggcttacggca---agctccgcctcccaggtgcaca i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42393058 96 + 202140232 tttttttttgag---gacggagtct-----ccacactgtcaccccaggctggagtgcagtggc-----------acgattttggctcactgca---agcttcacctcccaggttcaca i ponAbe2.chr3 I 365 C 0 s papHam1.scaffold7609 25271 70 + 100849 -------------------------------ggctctgtgg-cccaggccggagtg-agcggc-----------gccatcttggctccctgca---agctccgcc-cccgagttcccg i papHam1.scaffold7609 N 0 C 0 s bosTau4.chr1 22917859 115 + 161106243 -AAGTTTCAGAGCAATATTAAGTCTCTCCCCTAtgctgctg-ctgctgctgctgctaagtcgcttcagccgtgtccgactctgtgtgaccccatagatgtcagcctaccaggctccc- i bosTau4.chr1 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e loxAfr3.scaffold_13 41921471 0 + 62548349 C e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I e canFam2.chr31 28145573 12 - 42263495 I e equCab2.chr26 28497404 0 - 41866177 C e rheMac2.chr2 282728 158 + 189746636 I a score=26546.000000 s hg19.chr4_gl000194_random 159322 46 + 191469 ccatcc----------------------------------tcctgcttcagcctcctgagtagctgggactacaggtgcc s panTro2.chr4_random 3559865 46 + 6711082 ccatcc----------------------------------tcctgcttcagcctcctgagtagctgggactacaggtgcc i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42393154 46 + 202140232 ccattc----------------------------------tcctgcctcagcctcctgggtagctggtactacaggtgcc i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 282886 45 + 189746636 ccattc----------------------------------tccggcttccgcctcccgaggagctgggaccacaggcg-c i rheMac2.chr2 I 158 C 0 s papHam1.scaffold7609 25341 46 + 100849 ccattc----------------------------------tcctgcctccgcctcccgaggagctgggaccacaggcgcc i papHam1.scaffold7609 C 0 N 0 s bosTau4.chr1 22917974 56 + 161106243 ccatccctgagattctccaggcaagaatactggagtgggttcccatttccttctcc------------------------ i bosTau4.chr1 C 0 I 75 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e loxAfr3.scaffold_13 41921471 0 + 62548349 C e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I e canFam2.chr31 28145573 12 - 42263495 I e equCab2.chr26 28497404 0 - 41866177 C a score=20845.000000 s hg19.chr4_gl000194_random 159368 66 + 191469 caccaccacacccagctaatt-g---tttTTTAAGATTAAGGGCGAAATAAAAGCTGCTCCCCTATATTA s bosTau4.chr1 22918105 54 + 161106243 tatcaggctcctccgtccattgg----------attttccaggcaagagt-----CTCTCCCTTATAGA- i bosTau4.chr1 I 75 C 0 s rheMac2.chr2 282931 66 + 189746636 cgccaccgcgcccggcTCATT-G---CTTTTTAAGATTAAGGGCAAAATCAAAGCTGCTCCCCTATATTA i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42393200 67 + 202140232 caccaccatgcccggctaatt-gt--ttTTTTAAAGTTAAGGGCAAAATCAAAGCTGCTCCCTTATATTA i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3559911 66 + 6711082 cgccaccacacccggctaatt-g---tttTTTAAGATTAAGGGGGAAATAAAAGCTGCTCCCCTATATTA i panTro2.chr4_random C 0 C 0 s loxAfr3.scaffold_13 41921471 26 + 62548349 -----------------------TTATTTTCTAAATTTAAGGGCAGGAA--------------------- i loxAfr3.scaffold_13 C 0 C 0 s canFam2.chr31 28145585 37 - 42263495 ---------------------------------AAGTTTAGGGTAAGAGTAAAGCCACTCCCAGATAtta i canFam2.chr31 I 12 I 283 s equCab2.chr26 28497404 45 - 41866177 ----------------------G---TTTTCTAAGTTTCAGGGCAAGATTAAAGCGTCTCTCCTATATTA i equCab2.chr26 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=369535.000000 s hg19.chr4_gl000194_random 159434 298 + 191469 CATTCATAAATCAGAATTATTAAAGCAAGCTATTTATTTATTACAAACACATACTCCAAATTTAGCATCTAAGACATGACagtctttcaagagacatcaattta--ctttttagggtctatagctatatttgtattcat---gttattggtgtccataatatttcattagatgttctgggtaaattgataaatgaaaataatgtatgtgataaggagaacaacctaggtctcctggagggccccttacaactcagctggtgttagcagaaatgcctgggtgtaacagtgaga-----aacaacctttc s panTro2.chr4_random 3559977 298 + 6711082 CATTCATAAATCAGAATCATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACATGACAGCCTTTCAAGAGACATCAATTTA--CTTTTTAGGGTCTATAGCTATATTTGTATTCAT---GTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGGTAAATTGATAAATGAAAATAATGTATGTGATAAGGAGAACAACCTAGGCCTCCTGGGGGGCCCCTTACAACTCAGCTGGTGTTAGCAGAAATGCCTGGGTGTAACAGTGAGA-----AACAACCTTTC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42393267 296 + 202140232 CATTCATAAATCAGAATGATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACATGACAGCCTTTCAAGAGACATCAATTTA--CTTTTTAGTGTCCATAGCTATATTTGTATTC-----GTTATTGGTGTCCATAATATTTCATTACATGTTTTGGGTAAATTGATAAATGAAAATAATGTATATGATAAGGAGAACAACCTAGGCCTCCTAGAGGGCCCATtacaactcagctggtgttagcagaaatgcctgggtgtaacagtgagA-----AATGACCTTTC i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 282997 279 + 189746636 CATTCATGAATCAAAATGATTAAAGCAAGTTATTTACTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACATGACAGCCTTTCAAGAGACATCAATTTA--CTTTTTAGTGTCTATAGCTGTATTTGTATTCAT---GTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGCTAACTTGATAAATGAAAATAATGTATATGATAAGGAGAGCAACCCAGGCCTCCTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGCAGAAATGCCTGGGTGTGA------------------------ i rheMac2.chr2 C 0 I 7 s bosTau4.chr1 22918159 287 + 161106243 CAGTCATAAATCAG-ATAGTTTGTGTAATCATTCTATTTATTAGAAACACATACTCAAAACTCAGTGTCTAAGGTGTGACAGCCATTTAAAAAATATCAATTTAACCTTTACAGTATTTACAACTAAATTTATACTCAT---GTTATTGCTGTTCATAATATTTAAATACATCTC-TACATACAATGACAAGAGAAAATACTGCATATAT--TAGAGAACAAGTTAGGCATCCTTGGCAAACC--TACATTTCAGCTGGTATTAGCAGAAATATGTGGATATAATAG------------CAAACTTGC i bosTau4.chr1 C 0 I 5 s equCab2.chr26 28497449 286 - 41866177 CATTCATTAATCCAAATGATTAAATCAAACT-TCTCTTTGTTAG-AACACATACTTTAAACTCAGCATCTAAGACGTGACagcctttgaaaaggcatcaaattagtcttcat---gtttacaactaaatttgcactcat---attattggtgt---taatatttacttaaattttttgagtataatgataagtgtaaatagtgcacacatagtgggaaacaacccaggcacccttggtaaacc--tataactcatctagggttagcagaaatgactgggtataacagcaa---------gaaacctgc i equCab2.chr26 C 0 I 5 s canFam2.chr31 28145905 283 - 42263495 TAGTCACTAATCAGAATGATTAAAGCAAACTATCCACGTACTAGAAACATGTACTCCAAACTCAGCATCTAAGACGTGGCAAGCTTTGAAAAGGCACCAATTTCATCTTCATAGCATTTACATCTATATTTGCACTCTT---ATCATTGGTGTTTATAATATTTAATTAAGTTTTGTATGTACAGGGATAACAGAAAATAGTCTATATACAATGAGGAATAAAGTATGCGCTGTTAGTAAACC--TACAACTCAGC-GGTATTGGCAGAAGTGTCAGGGTATAATAGGG------------------- i canFam2.chr31 I 283 C 0 s loxAfr3.scaffold_13 41921497 285 + 62548349 GATTCATGAATCAGAATGATTAAATCAAACTACCCATTTGTTAGGAACATATATTCCAAAGTCAGCATCTACCATGCAACAGCCTTTGAAAAGACATCAGTGTAATCTTTACAATATCTACAACTAAAtttgcactcactggctctttggtgttcagactatttaattaaatttggtg-atacaatgacaagtacaagtagtatacatatgttgcaggacaacctaggcacccttggtaaacc--tatcattcagctggtgtgag----------------taACAGGGAGAAATCTAACAACC---- i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=121529.000000 s hg19.chr4_gl000194_random 159732 139 + 191469 aaaagtattgagcaatttttcaggcagaggaatatgtatgccaatccaggcagccagataagtggaggtcagttaaaagaTCAGTG-TGTGAT------------TACA--------------TTTTTTTTTAAGGTTTCTACTGAG-AGGAAATATAACACTCAGT s rheMac2.chr2 283283 141 + 189746636 AAAAGTGTAGAGCAGTGTTTCAGGCAGAGGAGTATGTATGCCAATCCGGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAGGTATGTGAT------------TACA-------------CGTTTCTGTTTAGGTTTCTACTGAG-AGGAAATATAACACTCGGT i rheMac2.chr2 I 7 C 0 s ponAbe2.chr3 42393563 153 + 202140232 AAAAGTGTTGAGCAGTTTTTCAGGCAGAGGAATATGTATGCCAATCCAGGCAGCAAGATAAGTGGAGTTCAGTTAAAAGATCAGGT-TGTGAT------------TACACATTTTTTTTTTGTTTTTTTTTTTAGGTTTCTACTGAG-AGGAAATATAACACTCAGT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3560275 140 + 6711082 AAAAGTGTTGAGCAATTTTTCAGGCAGAGGAATATGTATACCAATCCAGGCAGCAAGATAAGTGGAGGTCAGTTAAAAGATCAGGG-TGTGAT------------TACA-------------TTTTTTTTTTTAGGTTTCTACTGAG-AGGAAATATAACACTCAGT i panTro2.chr4_random C 0 C 0 s bosTau4.chr1 22918451 145 + 161106243 AAAATTGTT---AAGTTTTTCAGACTGAA----ATGTATGTTAATTCA-GAAGCTATATAAGCAAAGATCAGTTAAAAGATCAAGTATTTGGCCTTTTTAAAACATAAA--------------AGTTTTACTTAGATTTCCACTAAAAAGGAAATATAACACTCCAA i bosTau4.chr1 I 5 C 0 s equCab2.chr26 28497740 137 - 41866177 aaaagtgttcagcAGTTTTTCAGGTGGAA----AAGTATGCTAATCCAGGGAGTAAAATCAGTAAAGGTCAGTTAAAAGATCAAGTGTTTGAT------------TATA--------------AATTTTGCTTAGACTTCAACTAAGAAAGAAAAATAACACTCTGC i equCab2.chr26 I 5 C 0 s loxAfr3.scaffold_13 41921782 116 + 62548349 ACACGTGTTGAGCAGTTCTACA-------------------------AGGGAGCATGGTAGGTAGAAGTCAGTTAAAAAGGAAAGTACTTCAT------------TATA--------------ATTTTTGCTTAAGTTTCTTCTAGGAAGGAAAAACAACACTTTCT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I e canFam2.chr31 28146188 0 - 42263495 C a score=149746.000000 s hg19.chr4_gl000194_random 159871 127 + 191469 TATTATTTTCTCCGCATATCTCTGGTTATTTTGTC---ACAACTTTT-TATGTAAGCTACTACCAAACACTGGGTTATCCA---AGATCTATGGGTCGTATTCAATATTTGCTTTTCCCTCAACTACTAACACG s rheMac2.chr2 283424 128 + 189746636 GATTGTTTTCTCCGTATGTCTCTGGCTGTTTTGTC---ACAACCTTTACGTAAAAGCTGCTACCAAACACAGGGTTATCCA---AGATCTGTGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCCTAACACG i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42393716 127 + 202140232 TATTATTTTCTCCGTATATCTCTGGCTATTTTGTC---ACAACCTTT-TATGTAAGCTACTACCAAACACTGAGTTATCCA---AGATCTATGGGTTGTATTCAATATTTGCTTTTCCCTCAACTACTAACACG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3560415 127 + 6711082 TATTATTTTCTCCGCATATCTCTGGTTATTTTGTC---ACAACCTTT-TATGTAAGCTACTACCAAACACTGGGTTATCCA---AGATCTATGGGTCGTATTCAATATTTGCTTTTCCCTCAACTACTAACACA i panTro2.chr4_random C 0 C 0 s bosTau4.chr1 22918596 104 + 161106243 --TAATTTTCTCCTTACTTCTCTGGCTGTTACCTC---TCTATCTTT-TGTGAAAGTTACTACTAGACACTCGGTTATCCACTTCTAGCCATCGGTCATACTCAGCATTT------------------------ i bosTau4.chr1 C 0 I 280 s equCab2.chr26 28497877 126 - 41866177 GATCATTTTCTCCTTACCTCTCTGGCTATTATTTC---TCAACCTTT-TATGAAAGCTACCACCAGGCACTGGGTCATCCA---AGAACTATGGGTCGTACTCAGCATTTATTTTTCCCTCTACCCC-AATACA i equCab2.chr26 C 0 I 2 s canFam2.chr31 28146188 115 - 42263495 TATAATGATCTCTTTATCTCTTTGGCTATTATTACTTGTTAACATTT-TGTGAAAACTACTAGCAGGCACTGTTTCATCCA---AGAGTTATGGGTCATACTCAACATTGATTTTTTTC--------------- i canFam2.chr31 C 0 I 296 s loxAfr3.scaffold_13 41921898 109 + 62548349 GCTACTTTTCTGCTTACCTCTCCTGCTATTATTTC---TTAGTCTTT-TGGGAACAACACCATCAGTCACTGGGTCATCCA---AGACCTATAAGTCATATTCAGCATTAACTTTT------------------ i loxAfr3.scaffold_13 C 0 I 1694 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=20094.000000 s hg19.chr4_gl000194_random 159998 24 + 191469 TTTGATTCC-------------------CTTTGTAACTTTCTC s rheMac2.chr2 283552 24 + 189746636 TTTGATTCC-------------------CTTTGTAACTTTCTC i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42393843 24 + 202140232 TTtgattcc-------------------ctttgtaactctctc i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3560542 24 + 6711082 TTTGATTCC-------------------CTTTGTAACTTTCTC i panTro2.chr4_random C 0 C 0 s bosTau4.chr1 22918980 24 + 161106243 TTTAATTAT-------------------CTGTATATCCTCCTC i bosTau4.chr1 I 280 C 0 s equCab2.chr26 28498005 43 - 41866177 CTTGTTCTCCATAGGCCGTCTCTCCCAACTCCTTAACCTCTCT i equCab2.chr26 I 2 I 244 s canFam2.chr31 28146599 23 - 42263495 -TTAATTTC-------------------CTTCATAGCCTTTAT i canFam2.chr31 I 296 C 0 s loxAfr3.scaffold_13 41923701 24 + 62548349 TTTAACTCC-------------------CTTTGCAGTGTGGCA i loxAfr3.scaffold_13 I 1694 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=161502.000000 s hg19.chr4_gl000194_random 160022 130 + 191469 CCCTATTTCTCCTTTGAACCTGTTTTCCCCAACCACACTGAGTTAATAAGCCT-CCTATATACTCTCATACCCTGTTTTAT-----------------CTAAAGAGATTTCCTTTTTCTACTATTATACCCACCTCATTCCTTA-----ATtt s rheMac2.chr2 283576 148 + 189746636 CCCTATTTCTCCTTTCAACCCGTTTTCTCCAACCGCACTGAGTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCATCTCTCAGCGCCCTTGACCTAAAGAGATCTCCTTTTTCTACTCTTATACGCATCTCATTCCCTA-----ATTT i rheMac2.chr2 C 0 I 1 s ponAbe2.chr3 42393867 148 + 202140232 ccctatttctcctttcaacctgttttctccaaccacactgagttaacgagcctccctatatactctcataccctgtttcatctctaagctcccttgacctagagagatttcctttttctacgattatactcatctcatccccta-----attt i ponAbe2.chr3 C 0 I 950 s panTro2.chr4_random 3560566 130 + 6711082 CCCTATTTCTCCTTTCAACCTGTTTTCTCCAACCACACTGAGTTAATAAGCCT-CCTATATACTCTCATAACCTGTTTTAT-----------------CTAAAGAGATTTCCTTTTTCTACTATTATACCCATCTCATTCCCTA-----ATTT i panTro2.chr4_random C 0 I 1 s bosTau4.chr1 22919004 152 + 161106243 TCGTGGTTTTCCTTTCACAAGCTTTTCTCCAGCCATATTATGCTAATGAACTTTCCTATATGCTCTCACACCTG-TCTCATCTCCAAGATCCTTTGGCCTACATGGATGTCCTTTCCCTACACTCATGTCCATATAATCCTCTATTTCCATTT i bosTau4.chr1 C 0 I 1 s equCab2.chr26 28498292 148 - 41866177 ttctcctattcttttcatataattttctccaaccaaatcgagctaatgaactttcctgtatactcttgtgccttttctcatctccaaactcccttggcttaaagagatgtcctttcccttctatcacacccatgccatcctcta-----attt i equCab2.chr26 I 244 I 1 s canFam2.chr31 28146622 141 - 42263495 TCCTGCCTTTCCTTTCATACCATTTTCTCCAACCTTAGTGAGGCAATGAATCTT------TGTTCTCATGGCTTCTCTCATCTCCAAG-TTCCTTGGCCTGAAGAGATATCCTTTACCTACCATCATAACTATATCATCCTCTA-----ATTT i canFam2.chr31 C 0 I 1 s loxAfr3.scaffold_13 41923725 131 + 62548349 ------CACTTCTTTCATAGTCTGTTCTCTGACAAAACTGAGTTAATGAACTT-----------TTCATATATTTTCTCATCTTCATGCTCCCTTTACCTGAAGAAACTTTCCTTCCCTATTATTACAGCTATCTTTCCCCCTG-----GCAT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=27861.000000 s hg19.chr4_gl000194_random 160152 53 + 191469 tttcttcttatttctctctctattttttactcttttaggcacagctcatgtct s rheMac2.chr2 283725 53 + 189746636 TTTCTTTTTGTTTCTCTCTATATTTTTTATTCTTTTAGGCACAGCTCATGTCT i rheMac2.chr2 I 1 C 0 s ponAbe2.chr3 42394965 53 + 202140232 tttcttcttatttctctctatattttttgttcttttaggcacagctcatgtct i ponAbe2.chr3 I 950 C 0 s panTro2.chr4_random 3560697 53 + 6711082 TTTATTCTTATTTCTCACTCTATTTTTTATtcttttaggcacagctcatgtct i panTro2.chr4_random I 1 C 0 s bosTau4.chr1 22919157 38 + 161106243 CTTCTG-----------TCTTTATTGTTATTC---TGGTCACAGTGCA-TTAT i bosTau4.chr1 I 1 C 0 s equCab2.chr26 28498441 36 - 41866177 tttcta-----------atttttttttgggcc-----ggcacagagca-gtat i equCab2.chr26 I 1 C 0 s canFam2.chr31 28146764 50 - 42263495 CTTTTATTTATTTCT--ATTTTTTTTtcattcttctgggcatagtgta-gtat i canFam2.chr31 I 1 C 0 s loxAfr3.scaffold_13 41923856 40 + 62548349 -------------TACTAATTTATTATTATTATTATGGAAATAGCTCAAGTAT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I e oryCun2.chr14 21999153 25 - 163896628 I a score=78078.000000 s hg19.chr4_gl000194_random 160205 63 + 191469 catgactttcaaaaagtttttcttctgatattcccagctcgaa--ttaggtgtatcccaatcagt s panTro2.chr4_random 3560750 63 + 6711082 catgactttcaaaaagtttttcttccgatattcccagctcgaa--ttagttacatcccaatcagt i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42395018 63 + 202140232 catgactttcaaaaaatttttcttttgatattcccagcttgaa--ttaggtatatcctaatcagt i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 283778 63 + 189746636 CGTGACTTTCAAAAAGCTTTTCTTCTGATATTCCCAGCTTGAA--TTAGGTGCATCCTAATCCGT i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 21999178 59 - 163896628 CATGTTTTTCCAAAAG--TTTCCTCTGGTATTTCCAGTGTGAA--TTAA-TACATTTTCTTTAT- i oryCun2.chr14 I 25 C 0 s bosTau4.chr1 22919195 61 + 161106243 CATCACTTTTGAGAAT--TTTTCCTTAATATTCTCAGTCTCAA--CTGGGTACATGCTCGTCAGC i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28498477 63 - 41866177 caccaccttcaaaaag--ttttccctgatctttccaatctgaattttaggtacatcctcatcagc i equCab2.chr26 C 0 C 0 s canFam2.chr31 28146814 59 - 42263495 aactactttc--aaag--ttttctctgatattctcagtctgaa--ttaggCATATGTAGATGAAC i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41923896 58 + 62548349 --TATCTTTCACATA---TTTACCCAAATGTTCCCAATCTGAA--TTAGATGTCTTCTCAATGGT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e mm9.chr16 22800528 7604 - 98319150 I e cavPor3.scaffold_34 8623506 974 + 24440124 I a score=701112.000000 s hg19.chr4_gl000194_random 160268 612 + 191469 ttccttagaattacaagtctgcatattattggcttgcaatctgtc-ttaggctgggaattag--------------ctccttgtag--gcagggact-agaatttatttcctctt--atgtccataatgcctgacacaggaactATTCTC-ACATACAAATTGTAGGGCCATAATTCCTGAGAACATATGTATATTTTAG---------------TGACTCATAAAGA--CTTGAAATACAT--TTTTAAAATGATTAATTG-GGAAGTCCATGAAC-TTGACATCTTGATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATACACGATACTTGAAATACC----AGAAGAATATAA--TCAGAGA-----------GCAATAAATTAATCC---TAGATTTTTAGATGTGAAGAAGTTCTGA--GAAATATTTGAAGACTTGGCTCTAGGG-ATG-AGTACATAACAGAGACCAGTAGCCAGACT----CAGAGCTTTAAAG--AGTGAAGAAATGGC-ATTGCAGGGGGAAGGACTGTTGTATACTAAATAGAAATTGTCATTAAATGGAAGACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGAC-CAAAATGGTGTGGAGATAGAGGTAAATGCCATAAT-CTACAAAGAAGATA---TTTTTGTGCCAG---AACGAAATGAT s panTro2.chr4_random 3560813 612 + 6711082 ttccttagacttacaactctgcatattattggcttgcaatctgtc-ttaggctgggaattag--------------ctccttgtag--gcaggggct-agaatttatttattctt--atgtccataatgcctgacacagGAACTATTCTT-ATATACAAATTGTAGGGCCATAATTCCTGAGAACATATGTACATTGTAG---------------TGACTCATAAAGG--CTTGAAATAAAT--TTTTAAAATGATTAATTG-GGAAGTCCATGAAC-TTGACATCTTGATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATAGAGGATACTTGAAATACC----AGAAGAATATAA--TCAGAGA-----------GCAATAAATTAATCC---TAGATTTTTAGATGTGAAGAAGTTCTGA--GAAATATTTGAAGACATGGCTCTAGGG-ATG-AGTACATAACAGAGACCAGTAGCCAGAGT----CAGAGCTTTAAAG--AGTGAAGAAATTGC-ATTGCAGGGGGAAGGACCCTTGTATGCTAAATAGAAATTGTCATTAAATGG-AGACTAAGCAAGAGGCGGATGATCTGTGGATGACAGACGCAGAAAGGTGTGGAGATAGAGGTAAATGCCATAAT-CTACAAAGAAGATA---TTTTTGTGCCAG---AAAGAAATAAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42395081 613 + 202140232 ttcattagacttaccactctgcatattatttgcttgcaatctgtc-ttaggctgggagttag--------------ctccttgcag--gcaggggct-agaatttatttactctt--atgtccataatgcctgacacaggaactATTCTC-ACATATAAATTGTAGGGCCATAATTCCTGAGAACATATGTATATTGTAG---------------TGACTCATAAAGG--CTTGAAATAAAT--TTTTTAAATGATGAGTTG-GGAAGTCCAGGAAC-TTGACATCTCGATGTAGAAGAAAAGCAAGGGGAGACGAAGAAGTTATACAGGATACTTGAAATACC----AGAAGCATATAG--TCAGAGA-----------GCAATAAGTTAATCC---TATATTTTTAGATGTGAAGAAGTTCTGA--GAAATATTTGAAGACATGGCTCTAGGA-ATG-AGTACATAACAGAGACCAGTAGCCAGAGT----CAGAGCTTTTCAG--AGTGAAGAAATTGC-ATTGCAGGGGGAAGGGCTGTTGTATACTAAACAGAAATTGTCATTAAATGGAAGACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGATGCAAAAAGGTGTGGAGATAGAGGCAAATGCCATCAT-CTACAAAGAAGATA---TTTTCATGCCAG---GAAGAAAGAAT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 283841 614 + 189746636 TTCCTTAGACTTACCACTCTGCATATTATTTGCTTGCAATC--TC-TTAGGCTAGGAATTAG--------------CTCCTTGTAG--TCAGAGGCC-AGAATTTATTTACTCTTAAATGTCCATAATGCCTGACACAGGATCTATTCTC-ATATACCAATTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAG---------------TGACTCATAAAGG--CTTGAAATAAAT--TTTAAATATGATGAATTGAGGAAGTCCATGACC-TTGACCTCTCCATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACCTGCAATACC----AGAAGAATATAG--TCAGAGA-----------GCAATACATTAATCC---TAGATTTTTAGATGTGAAGAAGTTCTGA--GAAATATTTAAAGACATGACTCTAGAA-ATG-AGTACATAACAGAGACCAGTTTCCAGAGT----CAGAGCTTTTAAG--AGTGAAGAAATTGC-ATTGCAGGGAGAAGGGCTGTTGTATACTTAACAGAAATTGTCATTAAATGGAAGACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAAAAGTGTGGAGATAGAGGTAGATGACATAAT-CTTCAAAGAAGATA---TTTTTGTGCCAG---GAAGAAAGAAT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22808132 578 - 98319150 TTCTTTAAA--TGCAAAATTGCAGATTATTCTCTT---CACTCTC-TTAGTCTGGAAATTTGTGTTTTCTTTTTGATTTCGTAAAGGTCAAAAGGTC-AAATATTTTTTCTTTCT--TTTTTTTTTTTCTAT-ACACAA------------ATTTG------------CTACAGGTCCTACTGACAAATGTATATTGTAGCATTTCAGTTCAGATGGCTCTATAAGAGGATTTG-AATGAAT--G-CAAATATGACAAATTGAGGAGA--AAGTGAT-ATGAGATTTACTTATATGTGAAAAACAAG------GGAAACAGACAT-------------GACACT----GGAGATGTAGGAACTTGGGGATGCACTTGGCAGGCAGCACATAGGTCTTATACATGCTTGAATACAAAGGGGTTCTGCATGAAA-----------------TTAGGG-ATATAGCTGGTGACAGGAACCAGTATGCAAGGC----CAGTGCTCCAAATGGAGCTAGGAAGTTACAATG---------AAAAAGGGAGGATGATAAGTAGAACACGTGATCATATTGACAAATGAAAAAATGGCTGCTGACCTG-----GGAAGACAGACAGACTTGAAGAGACAAGGCTAGATGTCTCACTATTCCAGAGAAAAGA---TTGTTTTCCCAT---AA--------- i mm9.chr16 I 7604 C 0 s oryCun2.chr14 21999237 570 - 163896628 TGCCTTAGACTTATCACTTTGCATATTATTTATTG---ATCTCACATTAGGTTGGGAATTAG--------------CTCCTTATAG--CCAAGAATC-AGGATTTATTTATTTTT--ATGTATTTATTGCAT-AGTCCAGGCTTACTGTC-ATTTGCATACTGTGGAACCATAGTTCATGAGGACAGATGTGTAGTGTAA---------------GGACCTATAGTAG--CTTG-GATAAAC--A--ATATTTAATACATTCTGGAGGTCAAGGAAC-TTGA----TATCTGTATGCAAATACC---------TTAAATAG----------------------T----GGAAAAGTATGA--TCAGAGA---------CAGAAAAAAAAAAGTTC---CAGACTCTTAGATGTTTAAAACTTCTGAGGGAAATATTTGAAGTCATAGC-TTAGGGAATGGAGTAGCTCAAATAGGCTAGTAGCCAGCAT----TAGTGGTTCCAAGACAGTTAAGAAGCTGT-ATT---------AATGTTCTCATATGATAAATCAAATGTGTGATTAAATGGAGGACCAAGCAAGAGTCTGTTGACTTACAGATGAAAGACCCAAAAAGGTGTAGAAACAGGGCAAGATGCCACAAT-TTTCAAAGAAAGTA---TTTTTCAATCAG---GAAAGAAAAA- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22919256 581 + 161106243 TTCTGGAGACTTACCATTTTGCATTTTCATTTCTTGT-CAGTATT-TTAGACTGGAAACTAG--------------CTGCTTATAG--GCAGAGGCT-AGGATTTATT----CTT--ACTTTA-TAATGCCTAATATAGGGTCTATTGTC-ATAAATACATTGTGGGGCCATAATTCCTGGGGACATGTACACATTGTAG---------------GGACACAT---GG--CTTGGAGTAAATAAA-AAAATGTGATAAGTTAGA-GGGTCAATAAAT-TTTGCATTT--------GTAAAAAGCAGGAGTAAAAGAGATAAT---AGGTGATATGTGGAACACTGGGAAAGAAAGTATAG--TCAGAAA-----------GCAAGAAATTGATTC---TAGGGGCTTAGAGGT---CAAGTTCAGAGAGAAATATTTAAAGACATAGCTCAGGAA-ATGGAATGGGAAACATAACCAAGTAACCACATT----CACTACGAGAAATACAGTCAAGAACATGC-TTTGGGGGAG--AGGACCGACACAGGACAAACAGAATTCAGGGTTAAACAGAAGACCAAGCAAGAGGCTGATGGTCTGT-GATGACAGAC-CTAAAAGGTGTAG----------AGATGCCATGAT-CTTCACAGAAGACG----TTTTGCA-CAG---GAAAAAGA--- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28498540 575 - 41866177 ttccggagacttactactttacatcttacttgcttgt-tgctaca-ttaggctggaagctac--------------ctccctggag--gcaggggcc-aggatttatttattctt--atttccctaatgcctaacatagagtCTATTGTC-ATCTGCACATTGCAGGACCATAATTTATGAGGATATATACACTTTGTGG---------------AGACCCATAAAGT--CTTGGAATAAAT--G-AAAATTTGAGAAATTGGAGGGGTTAATGAAC-TTGGCCTCTTTATGTAGATGAAAAGCAAGAGTAGAAGTGACA------GGGGATGGTTGAAACACT-----GGGAAGTGTAG--TCAGCAG-------------------------C---TAGGTGCTTAGAGGTGAGGAAGTTTGGAGAGAAA---ACAAAGATGTAGCTTTGGGA-ATGGAGTGAGTAACAGAGCCCAGTGACCAGAGT----CAATGCTAGCAAGACAGTCAGGGCACTGT-TACAGGAG--------------------AAGCAGAATTTGGCATTAAACAGAAGACAAAGCAAGAGGCTGATGGCCTGGGGATGACAGAC-CCAAAAGGTGTTGAGATAGGACTAGATGCCACCGT-CTTCAAGGAAGAAGGCGTTTTTGCACCGGAAAGGAGGAGT--- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28146873 576 - 42263495 TTCTGGAGATTTACTCTTTTGCAATTTGCTTGTTTGT-CAGTGCA-TTAGGCTAGAAACTAG--------------CTCCCTATAG--GCATGGTTT--GGATATATT----------------TAATGCCTGCCGTGAAGCCTATGGTC-ATATACACATTGTAGGACCATAATTCCCGAAGACATACACACACTGTAG---------------GGACCAATAAAGG--CTTGGAATAAGT--G-AAAATGTGAGAAATTGGAAGAATCTGTGAACTTTGACATCTCTGTGCAGATGAAAAACAAGAGTAGAAGAGGTGAT----GTGGCTGTCTGAAACACT----AGGGAAGTATAG--TCAGAAA-----------ATAAGAAATTGATCC---TAGGTGCTTAGTGGTGAAGAGGTTTGGAGAGAAATACTTGGAGATGTAGCTCAGGGA-ATGGAAAGGGTGAGAGAGCCCAGTAACCAGATTTTACCAGTACTAGCAATACAGTCCGGGAACTGC-ACTGGG------------------------GCAAGAGCTGTCATAGGATAAATGGAAGACTAAGAGGTTGATAGTCAGTGGATGCCAGCC-TCAAAAGGTATAGAGATATAGCTAGATTCCACAAT-TTTCAAAGAAAATA--TTTTTTGCACCAG---GAAGGAGT--- i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41923954 584 + 62548349 TTCCCTAGACTTTTCCCGCTGTATCTTACTTGT-----CTCTGCA-TTGGGCTGTAAATGTG--------------CTCCTTGTAA--GCAAGGGCTCATGGTTTCTTTATTCTT--GTCTCCATAATGTCCAAC--AGGGCCTATTGTCAAGACATATATTATAGGACCATAAATCGT------------------------------------AAGCCCATAAAGG--GTGAGAATACAT--A-AAAATTGGAAAAGTTAGAGAGGTTAAGGAAC-TTGACATCCCTAGATAGATGAAAAGCAACGATAATAAAAGAAGTGTTATAGGATTCCTGAAACACT----AGGAAAGTGTAG--TTGGAAA-----------GCAAGAAATTGATTA---TAGGTGTTTAGATGAGAAGAAGTTCTGAGAGGAATACTTCCAGACAAAGTCTGGAGG-ATGAAGTAGGTGACAGGGACTGTAAACCAAGAT----CAATGCTACTCATACAGATAGGGAACTGA-ATGGGGG-----AAGGAGGTTGTATGATAAACATAATTTG-GATTAAA-GGAAGAGTAAGCAAGAGGCTATCGGGCTGTGGATGACAGATCTAAAGAGGACTAGAGATATGGCTTGATGCCACAAT-CTTCAAAG-AGATG---ATTTTGTACCAG---GAAGGAAAAAT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73446892 440 - 87759784 I e cavPor3.scaffold_34 8623506 974 + 24440124 I a score=190877.000000 s hg19.chr4_gl000194_random 160880 127 + 191469 --AGGTCTAGAATGT---AATAAAAGATAAAT-AGTTAAC----------TACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATAGCCATTGATATTAAC---TTCCACTTTGCTTCCAGACAAAA-GATTTTAAATATCTTAA s panTro2.chr4_random 3561425 127 + 6711082 --AGGTCTAGAACGT---AATAAAAGATAAAT-AGTTAAC----------TACATTGCAATGTGGTCTGAGAACTCACTGAAAGCATAGCCATTGATATTAAC---TTCCACTTCGCTTCCAGACAAAA-GATTTTAAATATCTTAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42395694 127 + 202140232 --AGGTCTAGAATGT---AATAAAAGATAAAT-AGTTAAC----------TACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATAGCCATTGATATTAAC---TTCCACTTTGCTTCCATACAAAA-GATTTTAAATATCTTAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 284455 127 + 189746636 --AGGTCTAGAATGT---AATAAAAGATAAAT-AGGTAAC----------TACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGATATTAAC---CTCCACTTTGCTTCCAGACAAAA-GATTTTAAACATCTTAA i rheMac2.chr2 C 0 C 0 s rn4.chr11 73447332 130 - 87759784 --AGGTGTGGAGTGC---TTGAAAGTGTAAAT-AGGCAGT----------TACATCATAAAGTGGTTTGAGATCTCAGAAAAGGCATGAGTATTAATGCTAAC-ATACTCACTACACTCTCAAACATCTAAGTAAATATCATCTTCA i rn4.chr11 I 440 C 0 s mm9.chr16 22808710 130 - 98319150 ---GATGTGGAGTGC---TATAAAGTATAAAT-AGGCAGT----------TATATTGTAAAGTGTTCTGAGGACTCAAAAAAGGCACGTGTGTTAATGGTAACAATGTTCACTATGCTCTCAAAAATCTAAGTACTTAACATCTTCA i mm9.chr16 C 0 C 0 s oryCun2.chr14 21999807 123 - 163896628 ------CTGGAATGT---GATACTAAATAAAC-AGACAAC----------TACATTATAATATGGTTTGAGAACTCACTGAAGGTGTAGGTGTTGATAGTAGC---CTCTACTTAGCTCACAGAAAATT-GGTTTTGAATATACTAA i oryCun2.chr14 C 0 I 709 s bosTau4.chr1 22919837 126 + 161106243 --ATGTCTGGAACGT---GACAGAAGATAAA-----TAGTTACACTGTTATGCACTGTAATGTGATCTGAGCGCTctttccaggtggtgctagtggtaaagaa---ccc--ccctgccaat--gcagga-gacttaagagatgt--- i bosTau4.chr1 C 0 I 239 s equCab2.chr26 28499115 123 - 41866177 --AAGTCTGGAATGT---GATAGAAGATAAA-----TAAT----------TACATTGTAATAGGATCTGAGAATGTAGCAAAGACAAAGTTGTTGATGGTAAC---CTCCACCTTGCTCATGGACAGTA-GATGTTTAATATCCTAA i equCab2.chr26 C 0 I 13 s canFam2.chr31 28147449 125 - 42263495 --AAGTTTGGAATGT---GATAAAAGATAAAT-TGGTAAT----------CGTACTGTAATGTGATCTGAGACC-CACTAAAAGCAGACGTG-TGATGGCAAC---CTATATTTTGCTTACTGGCAATA-GGTTTTTAATATCTTAA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41924538 107 + 62548349 AACAATTTGGAATATTAAAAAAAAGGATAACTAAGATATT----------TATAAGATAATATGATCTAAGAAGCCACTAAAGGTAAAGGTGTTGATGTTCAC---T---------------GACAATA-GATTTT----------- i loxAfr3.scaffold_13 C 0 C 0 e cavPor3.scaffold_34 8623506 974 + 24440124 I a score=-17350.000000 s hg19.chr4_gl000194_random 161007 25 + 191469 AAATTACATTTGATATTGTATG---------------------------------att s panTro2.chr4_random 3561552 25 + 6711082 AAATTCCATTTGATATTGTATG---------------------------------att i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42395821 25 + 202140232 AAACTGCATTTGATATTGTATG---------------------------------ACT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 284582 25 + 189746636 AAATTCCATTTGATACTGTATG---------------------------------att i rheMac2.chr2 C 0 C 0 s mm9.chr16 22808840 46 - 98319150 ACTTTACACATAACACTGTATA-ATTCCAG-TCTATGAGATGCTT----------AGT i mm9.chr16 C 0 C 0 s rn4.chr11 73447462 46 - 87759784 ACGTCACacgaatcactgtcta-attccac-tgtatgagatgctt----------agt i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8624480 45 + 24440124 AGTTTGCATTTG--GCTACATAGGTTCTAA-TATATTTGGTCTAA----------AGC i cavPor3.scaffold_34 I 974 C 0 s oryCun2.chr14 22000639 57 - 163896628 AAGTTGTATTTGatattataag-tttctgcttatataaaattcctaaaatatcaaaat i oryCun2.chr14 I 709 C 0 s loxAfr3.scaffold_13 41924645 5 + 62548349 ----------TGATT------------------------------------------- i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22919963 239 + 161106243 I e canFam2.chr31 28147574 0 - 42263495 C e equCab2.chr26 28499238 13 - 41866177 I a score=103074.000000 s hg19.chr4_gl000194_random 161032 158 + 191469 cat-caagac--aaagtaaagctgtagttgccctgggcgggtggggaatggggagtcac-ttttaatgggtacaggatttcaattttaa----aagacaaaaagaattatggagatgggtggtggtgatgcttgcacaacattgtgaatacatt--------------------------------------------------------------taatgacaccga s oryCun2.chr14 22000696 154 - 163896628 cat-aaagacagaaagtggaatggtgatt------gctaggggaggtatggggaatcattgtttaatgggttcagggattcaattttgc----aggatgcaaagagttatgga-gtggatggtgttgatgactgtgcggcataataaacttatt--------------------------------------------------------------tagtaccactga i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8624525 138 + 24440124 CATAAAAAGTAAGAGCTGAATAGTAGTTT------ggggaagggagactgagatagcactgtttaaaggttataggaattcagttgatggctgatggtgatacacattttata-------------------tgcacatatgtatata--tatt---------------------------------------------------------------aacaacattgg i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73447508 148 - 87759784 cac-gggggcaggaggtatagaaggtgcc------ggcagagaaagactgaaa-gttgttgtttaagggatgcag---ttcagttttttg--aaagacaatacccattttggaaatgaatggcgtaaatgattgaataatattatgga--tgtT-----------------------------------------------------------------TACTATTGG i rn4.chr11 C 0 C 0 s mm9.chr16 22808886 211 - 98319150 CAT-GGGGACAGGAGATATGGAATACACC------GGCAGTGAAAGACTGAAA-GTCTTTGTTTAAGGGATACAG---TTCTGTTTTTT----AAGACAATAGTAATTTTGGAAGTGAACGGCAGAGATTGGTGTACAAAATTACGAa--tattaattatattgtatattaattatatattatattatattatattatatattaattatattatattaATAATACTGA i mm9.chr16 C 0 C 0 s rheMac2.chr2 284607 159 + 189746636 cat-caagacagaaagtaaagcggtagttgccctgggagggcggggaatggggagtcactgtttaatgggtacaggatttcaactttac----aaaacaaaa--aattatggacatgggtggtggtgatgcttgcacaacgttgtgaatacatt--------------------------------------------------------------taataacactga i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42395846 161 + 202140232 CTT-CAagacagaaagtaaagctttagttgccctgggagggcaaggaatggggagtcactgtttaatgggtacaggatttcaattttac----aagacaaaaagaattatggagatgggtggtggtgatgcttgcacaacattgtgaacacatt--------------------------------------------------------------taataacactga i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3561577 161 + 6711082 cat-caagacagaaagtaaagctgtagttgccctgggagggcggggaatggggagtcactttttaatgggtacaggatttcaattttac----aagacaaaaagaattatggagatgggtggtggcgatgcttgcacaacattgtgaatacatt--------------------------------------------------------------taatgacactga i panTro2.chr4_random C 0 C 0 e bosTau4.chr1 22919963 239 + 161106243 I e loxAfr3.scaffold_13 41924650 0 + 62548349 C e canFam2.chr31 28147574 0 - 42263495 C e equCab2.chr26 28499238 13 - 41866177 I a score=18403.000000 s hg19.chr4_gl000194_random 161190 71 + 191469 attgtataattaacagtggttaagatgcaaattgttga------gtgtgttttgccacaattaaaaaaCAGAAAACA s panTro2.chr4_random 3561738 71 + 6711082 attgtatacttaacagtggttaagatgcaaattgttga------gtgtgttttgccacagttaaaaaaCGGAAAACA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42396007 71 + 202140232 cttgtatacttaacagtggttaagatgcaaattgttga------gtgtattttgccacaattaaaaaaTGGAAAACA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 284766 71 + 189746636 attgtagacttaaaagtggttaagatgcaaattgttga------gtgtattttgccacaataaaaaaaTGAAAAACA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22809097 66 - 98319150 ACAGTATATAT--AAGTGATTAAGATGTAATATTTTAT--GTTTGTGTAATTAGCT-------GTAAATATTAAACA i mm9.chr16 C 0 C 0 s rn4.chr11 73447656 56 - 87759784 AC------------AGTGAATAAGACAGAATATTTTAT--GTTCATGCAATCTGCT-------GTAAAAATTAAACA i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8624663 66 + 24440124 actgaacttgt-aaaatggttaagatggtatattttgt---tatgtgcattttgcT-------GAAAAAATGGAAAA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22000850 67 - 163896628 actgtacacttaaagatagttaagttggtaagtcttgtctgtttttcca---caat-------gaaaaaTGAAAAAA i oryCun2.chr14 C 0 C 0 s loxAfr3.scaffold_13 41924650 12 + 62548349 ATTGTAAAATTA----------------------------------------------------------------- i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22919963 239 + 161106243 I e canFam2.chr31 28147574 0 - 42263495 C e equCab2.chr26 28499238 13 - 41866177 I a score=2027478.000000 s hg19.chr4_gl000194_random 161261 779 + 191469 ATAGTATTTGAAGATATAGCCCATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGGATAGA-TA-TTTATGCTGTTTCTGAACTGGAGGTTACTGGTATTCTC-TAAGGTATAGGAAAATTGATCTTAT-GTGGCTAACTGAGGTGGATA--TAGTTGTATCAGTCAGAC-AGTAATGA---TATAATC---ATG---ATAGTTTACATTTAACACAACTTACATGTGTTATACTTTAGAAAGCACTTCATAGATATTATTACTTCATACCATTTTCCCCTTACCATATTTGTCTCTCCTTTC--------------TCTGCTGACTTCACAAAATGTCTGTTCCACACTACTC--AGTTCATCTCCTTAT-TTTGTCAAAAT------T----TTAAGTATCAGAGTCTCC-----AAAAAAAAAATTCCAGACAAGTCTCATCAGCTTTCGGTCATTGATTAATCGATG--------CTCTTAGAGGGTTTCCCTTCCCCTTCTCAATTTAACATAGCTTCCCAATTCACTTGCCAGTAAAACAACGTTGTTTATATGGTTTT-TATTTCTTCCTGCTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCAAGGTGAAGAAAATGAAACAAAattgttaatatttatcaagagccaggtact----gttttcagtgtcctagaagcataaactagtgtaatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaac-caagacacagagagttaagggaaattt-cccaagatcacacagccact-gaggctatgaac s panTro2.chr4_random 3561809 779 + 6711082 ATAGTATTTGAAGATATAGCCCATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGAGGATAGA-TA-TTTATGCTGTTTCTGAACTGGAGGTTACTGGTATTCTTATAAGGTATAGGAAAATTGATCTTAT-GTGGCTAACTGAGGTGGATA--TAGTTGTATCAGTCAGAC-AGTAATGA---TATAATC---ACG---ATAGTTTACATTTAACACAACTTACATGTGTTATACTTTAGAAAGCACTTCATTCATATTATTACTTCATACCATTTTCCCCTTACCATATTTGTCTCTCCTTTT--------------TCTGCTGACTTCAGAAAATGTCTCTTCCACACTACTC--AATTCATCTCCTTAT-TCTGTCAAAAT------T----TTAAGTCTCAGAGTCTCC-------AAAAAAAATTCCAGACAAGTCTCATCAGCTTTTGGTCATTGATTAATCGATA--------TCCTTAGAGGCTTTCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTAAATGGTTTTGTATTTCTTCCTGCTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATATTCAAGGTGAAGAAAATGAAACAAAattgttaatatttatcaagagccaggtact----gttttcagtgtcctagaagcataaactagtgtaatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaat-caagacacagagagttaagggaaattt-cccaagatcacacagccact-gaggatatgaac i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42396078 776 + 202140232 ATAGTATTTGAAG--ATAGCCCATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGGATAGA-TA-TTTATGCTGTCTCTGAGCTGGAGGTTACTGGTATTCTC-TAAGGTATAGAAAAATTGATCTTAT-GTGGCTAACTGAGGTGGATA--TAGTTGTATCAGTCAGGC-AGTAATGA---TATAATC---ATG---ATAGTTTATATTTAACACAATTTACATGTGTTATACTTTAGAAAGCACTTCATAGTTATTATTACTTAATACCATTTTCCCCTTACCATATTTGTCTCTCCTTTC--------------TCTGCTGACTGCAGAAAATGTCTCTTCCACACTACTC--AATTCATCTCCTTATCTTTGTCAAAAT------T----TTAAGTCTCAGAGTCTCC-------AAAAAAAATTCCAGACAAGTCTCATCAGCTTTCAGTCATTGATTAATCAATG--------CCCTTAGAGGCTTTCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAAAACACTTGCCGGTAAAACAAAGTTGTTTATATGCTTCTGTATTTCTTCCTGTTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATG-AATACTCAAGGTGAAGAAAATGAAACAAAATGGTTAATATttatcaagagccaggtact----gttttaagtgtcctagaagcataaactagtgtgatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaac-caagacacagagagttaagggaaattt-cccaagatcacacagccact-aaggctgtgaac i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 284837 789 + 189746636 ATAATGTTTGAAGATATAGCCCATTTCATATGATAGCTAGCTGTATGTGTCTGCTCAACTGTGAATAGA-TA-TTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTC-TAAGGTATAGAAAAATTGTTCTTAT-GTGGCCAAGTGAGGTTGATA--TAGTTGTATCAGTCAGAC-AGTAATGATATTATAATC---ATG---ATAGTTTACATTTAACACAATTTACATGTGTTATACTTTAGAAAGCACTTCATAGATATTATTACTTAATACCATTTCCCCCTTACCATATTTGTCTCTCCTTTC--------------TCTACTGACTTCAGAAAATGTCTCTTCCACATTACTC--AATTCATCTCCTTATCTTTGTCAAAAT------T----TTAAGTCTCAGAGTCTCCAAAAAAAAAAAAAAATTCCAGACAAGTGTCATCAGCTTTCAGTCATTGATTAATCAGTG--------TCCTTAGAGGCTTTCCCTTCCCCGTCTCAATTTAACACAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTATATGATTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATttatcaagagccaggtaca----gttttaagtgtcttagaagcataaacaagtgtgatgctcaccagctcacatgagaggcaaaaatggatgaaactataaaac-caagacacagagagttaagggaaattt-cccaagatcacacagccact-aaggatatgaac i rheMac2.chr2 C 0 C 0 s mm9.chr16 22809163 756 - 98319150 ATTTTATCAAAGTAGATGGGTAACATCATTCAA----GAATGGTCCACACATCCTCAGCTGGGGAGACA-CA-TTTCTGATACC-CTGA-CTGGAGTTTAATGGTATTCAC-TGG---CTGGGAAAATTAATCTCA--ATGGCCAATTCACATAGATG------TACATCAGTCAGGC-AATAAGGATGCTATAGTCATCATG---GTGATTTACTTTTTACACACCTTGCATTTATAA-CCCCATGGACCCAC-TTAAAGACATTATTACTTAATACCATATTCCC-TTATCACACTTGTCTCCCTTGTC--------------TCTGCTGACTACAGAAAATGTCTCTCCCACAATGCTCTTCAATCATCTTCACTCCGCTGTCCAAAC------TTTTCTTAAGTCTCAGAGTCTCC------AAGATAATATTCCAGACAAGCCTCATCAGCTTCCAGTTACTGATTCACC-ATG--------CCCTTAGAGAC-CTTCTTCCCCCTTCTCAATTTAACATAGCTTTCAAATAC-CTTTCCAGTAAAATGAAGCTGTTTATATGGTTTTATATTTCCTCCTGTAGAC-TTGTGAGCATTTATCCACATTGACATTGATTTCCTTCTGGCTGTAAACTCATCAAGATGAAGAAAACGATACATGATGGGTTTTTTTGAGCAAGAGTCAGGTGTT----------TGTTTCCTACATGTAGAAGCTAATGGGATTGTCCCTAGTCCA--TGAGAGGCAAAACTAG--------GTCAAAC-TAAGACTTAAAGATACAAGTGGTCTTT-CCCGAAATCACAAAGCTTCT-AGATTTAAGTAC i mm9.chr16 C 0 I 498 s rn4.chr11 73447712 741 - 87759784 ACTGCGCCAAAATAGATAGGTAACATCATTCTA----CAATGGCCCACACATCCTCAGCTGTGGACTCA-CA-CTTCTGATACCACTGT-CTGGAGTTTAATGGGATTCAC-TGG---TTGGGAAAATTGATCTCA--ATGACCAATTCATATGGATG------TACATCAGTCAGGC-AATAACGATGCTATAGTCATCCTG---GTGATTTAGCTTTTACACCCCTTGCGTTTATAACCCCCATGGAGCTAC-TTAAAGACATTTTTACTTCATACCATACTCCT-TTATCACATTCGTTTCTCTTGTC--------------TCTGCTGACTACAGAAAATGTCTCTCCCACAACACTCTTCAATCATCTTCCCTCCGCTGTCCAAAC------TTCTCTTAAGTCTCAGAGTCTCC------AAGATAATATTCCAGACAAGCCTCATCAGCTTCCAGTTACCGATTCCCC-ATG--------CCCTTAGAGAC-CTTCTTTCCCCTTCTCAATTTAACATAGCTTTCAAATAC-CTTTCCAGTAAAATGAAGCTGTTTATATGGTTTTATATTTCCTGCTGTTGCC-TTGTGAGCATTTATCCATATTGACATTGATTTCCTTCTGGCCGTAAACTCATCAAGATGAAGAAAATGGTACATGAT-GGTTCTTTCGAGCAAGAGTCAGGTATC----------TGTTTCCTTCATGTAGAAGCTAGTGAGATTGTCCCCAGTCCA--CAAGAGGCAAAGCCAG--------GCCCAAC-TAAGACATAAAGATGCAATTGAACTTT-TCCAAGATCATACAAC----------------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8624729 741 + 24440124 AGT---------CACATGAGCAAGTTTAGTTAA----TGTCAGTATGTATATGTTTAGCTGTGTAAAGG-AA-TTTGGGA-----CTGC-T-----TTTAATTACATTCTC-CAAAATATTGGAAAATAGAACTCAT-GTGGCCAATTCATATGGAGA--TAGTTATATCACCCTAGT-GATAATGGTATCATAATCATAATG---ATAATTTACTTTTATAACATTCTACATTTGTAATACCTGAGAAAGCACTTTATAGACATTATTACTGAGTACCATTTACCG-TTGCTATATTTGTCTCTCCTGTC--------------TCTGCTGACTTCAG-AAATGTTTCTCCCATAATGCTCTTCAATCATCTTCCTT---TTATCAAAAC------TCT--TTAAGTCTCAGAGTCTCC------AAGAAAATATTCCAGACAAGACTCATCAGTTTCCAGTCACCGATTCACTAAGG--------TCCCGAGGGACTTTTCCTTCCCCATCTCAATTTAACACGGCTTTCAAATAC-CTTTCCAGTAAAATGGAGCTGTTTATATGGTTTTGTATTTCTTCCTGTTGCC-TTATGAGCATTTATTTACATTGACATTGATTTCCATCTGGCCATGACCTACTCAGGGTGAAAAAAATGCTACAAAAT-------ATTTAACAAGAGTCGGGTACT---------AAGTTTCCTACAAGGATAAACACATGTAAGGCTCACCAACCAATGTGAGAAGCACAGATGA--------TATAAATATAAAAGACACAAAATTAAGAGGAAATT-CTCAGGTTCATTTAGTTGCT-AAAGAGATGAGC i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22000917 785 - 163896628 ATTGTGTTTAGAAACAAAGACCATTTTATCAGA----TTGTTGT----GTCTGCTTACCTATGGACAGA-TATTTTTTGATAGCTCTGC-CTAGATGTTATTGGTAACCTC-CAAGGTATGGGAAAAATTGATCCATCTTAATCAAGTGGTGTGGATA--TAGTTGTGTCAGCCAGAT-GATACTGATGCTATAATCTTAATG---ATAACTTACATTTAATATGCTTTATA--CATTACCCTTTAGAAAGCACTCCATAGATGTTATTACTGAATATCGTCTTCCTCTTACCACATTTGTCTCTCCGGTC--------------TCTGCTGACTACAGAAAATATCTTTTCCACAACACCCTTCAATCATCTTCTTCCCGTTGTCAAAAC------TTCTTTTAAATCTCAGGGTCTTC------AAGAAAGTATTTCAGACAAGCTTCATCAGTTTCCAGTCACTGATTCAACAATG--------TCCTTAGAGAA-TTTCTCTTCCCTTCCCAGTTTAACATAGCTTTCAAATAC-CTTTCCAGTAAAATGGAGTTGTTTATACGGTTTTGTATTTCTTCCTGTTGCC-TTATGAGCATTTATCCATATTGACATTGATTTCTGTCAGGCCAAGAAGTACGCAAGATGAAGGAAATGGTATatgatagctaatgtttatcaagagccaggtgctgcctgccctaagtgttctataagcataaagtagtgcaatacacattatcccataagggaggtacagattgttgcaaatgtaaagc-taaggcacagagaggtaacagagcttt-ctcaagattggccagttact-aaagagataaac i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28147574 753 - 42263495 ----------------------ATTTCACCCAA----TAGCTGTGAGGGTCTACTCAGCTGTGGACAGA-GG-TTGCTGATACCTCTGA-TTAGATATTATTGGTATTCTT-TGAGGCAT-GGGAAATTGATCTCAC-ATGGCCAAGTGATATGGCTG---GGGTGCATTAGCCAGGG-aataataatattataatt---gta---ataatttaCATACAGCCGATTTTACATGTGTTACCCTTTAGAAAGCACTTCAAATACATTTTTACTTTATATTGTTTTCCT-TTACTGTATTTGTCTTTCTTGTTATTGAACAAGAATACTTGCTGATTTCAGAAAATGTCTTTTCC-CAACATTATTCAATCATCTCCTTCCCTTTGTCAAAACTTTTTTTTTTTTTAAGACTTAGGATCTCC------AACAGAATATTTCTAACAAGCCTCATGAGTTTCCAGTCGCTGATTCACCGTTGTGATCTCAT--------------CCTTCCCCTTCTCAATTTAACAGAGCTTTCAAATGTGCTTTACAGTCAAATAGAATTGTTTCTATGGTTTTGCATTTCTTCCTGGTGCCTTTATAACCATTTATTCATCTTGACATTGATTTCTATCAGACCATAAGCTATACAAGGTGAAGAAAATGGTACAAGATGACTAATATTTGTCAAAAGCCAGCTACT----GTTGTAAGTA----------------TAGTGTAAT----AGCAGCCCATAAGAGAGGGACAAACTGATGCATATGTAaaac-taaggcacagagaggtaagggaaattt-cccagaattgcacagctgccaaagggaggagg- i canFam2.chr31 C 0 C 0 s equCab2.chr26 28499251 792 - 41866177 -----------AGACATAGTCAATTTCTCCTAA----CAGCTGTAGAGGTCTGCTCAGCTCTGGACCTCTGA-TTTCTGATACCTCTGA-TTGGATGTTATTGGTATTCTC-TGAGTCAC--GGAAATTGATTTCAC-ATGGCCAAGTGATGTGGCCAAGTAGTTGTATCAGTCAGGC-AATAATGATATTATAATC---ATAACGATAATTTACATATAACAGATTTTACA----TTATCCTTGAGAAAGCACTTCAAATACGTTATTACTTTATATGCTTTCCTC-TTACTGCATTTGTCTTTCCTGTTATTGAACTATCATATCTGCTGACTTCAGAAAATGTCTCTTCC-CAACACTACTCAATCATCCTCTTCCCTTTGTCAAAAC------ATTTTTTAAGTCTTGGGACCTCC------AAGAAAACA-TTCAGACGAGCCTTGTCAGTTTCCAGTCACTGATTCACCATTGTGATCTCATCCTTAGAGGCTTTCCCTTCCCTTTCTCGATTTAACATAGCTTTCAAATATGCTTTCCAGTAAAATGGAGTTGTTTATACGGTTTTGTATTTCTTCCTGTTGCCTTTATAAGCATTTATCCATATTGACATTGATTTCTGTCAGGCCATGAACTACTCAAGATGAAGAAAATGGTACAAGATGGCTagtattcatcatgagccaggtact----gttctaagtagccaataagcttaaactagtctaatactcaccagctcataagagagtcacaaattgatgcgaattctaaag-taagttacagagaggtaaaggaacatt-cccagaatcacacagctact-aaggaatgcga- i equCab2.chr26 I 13 C 0 s bosTau4.chr1 22920202 773 + 161106243 GTGGCATTTAAAGACG------ATTTCACCT------TAGCTGTAAGGATCTCCTCAGCCCTGGACAGA-TA-TTACTGATACCTCTGA-TTAGATGTTACTGGTATTC---TGAGGCAT-AGGCAGTTGATCTCAC-GTGGCTAGGTGACATAGCTG--TAGCTGTATCAGCCAGGA----AATGATCCTGTAATC---ATA---ATAACTTACATGTAACAGGTTTTGCACACGTTACCCTTTAGAAAGCACTTCAAGTATGTTATTACTT------GTTTCCCT-TTACTGCATTTGTCT----TGTTATTGAACTGTCATATCTGTTGACTTCAG-AAATGTCCTTTCC-CAACACTGTTCAATCATCTTTTTTCCTCTGTCAAAAC---------TTTTAAGTCTCAGGGTCTCT------AAGAGATTATTCCAGACAAGCCTGGTCAGTTTCCAGTCACTGATTCCCAACTGTGATCTCATCCTTAGAGGCTTTCCCTTCCCCTTCTCAATTTAACA-AGCTTTC-AATAGCCTTTCCAGTAAAATGTAGTTGTTTATATGGTTTTATATTTCCTCCTGTTGCCTTTATAAGCATTTATCCATATTGACATTGATTTCTATCAGGCCATAAACTATTCAAGGTAAAGAAAATGGTACAAG-TGGTTAATCTttatcaagagccaggcacg----gctctgagtgtcccgtaagcatcagctagtataatacccaccagctcacaggagaggcacaaac-aatgtgtatgtaaagc-taagacagagagaggtaagggaactttcccccaaatcacacagatact-aagggagatgg- i bosTau4.chr1 I 239 I 2 s loxAfr3.scaffold_13 41924662 764 + 62548349 ----TATTTGAATACATAGTCAGTGTCATTTGA----TAGCTGTAAGGGTCTACTCAGCTGTGAAAAGC-AA-TTTCTAGTATCTACA--CTGGGGGTTATTTGTATTCTC-CTAGGCATTGGACAGTTGATCTTGT-ATGGCCAAGTTGCATGAATG--CATTTGTATCAGCGAGGTAAATAATGATGTCATAATTGTAATC---ATAATTTACAAAGAACA-ATTTTATATGTGTTACTCTTTAGAAAGAACTTCATATACGTTATTGTTTTATATCATTTTCTCCTTATCATATTTGTTTTTCCTGATATAGAGCTATCTTTTCTGCTGACTTCAGAAAACGTCTCTCCCACACTATTC---AATCATCTCTTTCCC-TCATCAAAAC------T----TTAAGTCTCAGGGTCTCC------ATGAAAATATTCCAGACAAGCCTCATCAGTTTCCAGTCACTGATTCACCATAGTGATCTCATTCTTAGCGGTCTTCCCTCCCCCTTCTCAATTTAACACAGCTTTCAAATGTGCTGACCAGTAAAATGGAGTTGTTTATATGGTTTTGTATTTCTTCCTGTTCCCTTTATGATAATGTGGCAACGTTGGCATTGATTCCTAGTAGGCCAGGAGCTAGCCCAG---AGGAAGATGTGATGAGTAAGGTAATATTTATTGAGAAATAGGTAAA----ATCCGAAGTGCCGTTCAAGTACAGACTGGT-------------------AAGACAGATATAAATTTTT-----------ac-aaaggcatggagacattaagaagcttg-cccaggctcacacatccact-aaggggttgagc i loxAfr3.scaffold_13 C 0 C 0 a score=29096.000000 s hg19.chr4_gl000194_random 162040 55 + 191469 tagattttgacttca----ggctgtttaccccagaacctgtgctttcatccgtcatttg s panTro2.chr4_random 3562588 55 + 6711082 tagattttgacttca----ggctatttaccccagaacctgtgctttcaaccatcatttg i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42396854 55 + 202140232 tagattttgacttca----ggctatttaccccagagcctgcgctttcaaccatcatttg i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 285626 55 + 189746636 tagattttgacttca----ggctgtttaccccagagcctgtgctttcaaccatcatttg i rheMac2.chr2 C 0 C 0 s rn4.chr11 73448453 40 - 87759784 ----TTTTAGATTTA----AGCACATAAATTCATTTCTTTTGTTTTCA----------- i rn4.chr11 C 0 I 1116 s cavPor3.scaffold_34 8625470 47 + 24440124 TACATTGTGAATTGA----GGGTACTTAACCCA-------GGTTATCAACCATCATTT- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22001702 22 - 163896628 -------tagagttaccccagagccccag------------------------------ i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28148327 40 - 42263495 ------------------taaaattttaatcaagagcctatgctttcaaccat-aattt i canFam2.chr31 C 0 C 0 s equCab2.chr26 28500043 41 - 41866177 ------------------tagcatttgaatccagagcctgtgttttcaaccatcaactg i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22920977 41 + 161106243 ------------------tagaatttgaatccagAACCCACACTTTTATCCATCATTTG i bosTau4.chr1 I 2 C 0 s loxAfr3.scaffold_13 41925426 54 + 62548349 tagattttaagtaca-----gctgtttatcccagagcccatgctttcaaccactgtttg i loxAfr3.scaffold_13 C 0 C 0 e mm9.chr16 22809919 498 - 98319150 I a score=460811.000000 s hg19.chr4_gl000194_random 162095 417 + 191469 tactgCTTCCCTAAATTACACTTGAGTACA-------------------------CTGTGAC--------Atcaaatttcacctatgacactgattatctggggaactttgc---aacttattctgaatatgactcagttttcttttctgta-cagaggtaa--agtcagtatatactccatagatttgttataa-ggattatatgaaatgacacaa--------gagaaggctttaaaaggacttggaaagcaataagcTT-----TTTTGTTTT-------CAATCAT-----TTTTCAATAGGTTATCAGTGTTGTGAATGGTTC-ATGAAA--------AATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGTTGTTTAATAGTGTGTTT--AATATTA---ATATAATAGTAAGAAATGTTGTT---ATT-----GTTGAG--TAAT--AGTTATTTGGCTTTT-C-GCTGCTTTTCTTT-TCTAGTGTTTTAGTCAGAGACTT s panTro2.chr4_random 3562643 415 + 6711082 tactgCTTCCGTAAATTactcttgagtaca-------------------------ctgtgac--------atcatatttcacctatgacactgattatctggggaactttgc---aacttattctgaatgtgattcagttttcttttctgta-cagagataa--agtcagtatatactccatagattcgttataa-ggattatatgaaatgacacat--------gagaaggctttaaaaggacttggaaagcaataagcTT-----TTTTGTTTT-------CAATCAT-----TTTTCAATAGGTTATCAGTGTTGTGAATGGTTC-ATGAAA--------AATGACTCTGGGCTCAGTGAGTAACTGAAATGTTGTTGCTTAATAGTGTGTTT--AATATTA---ATATAATAGTAACAAATGTTGTT---ATT-----GTTGAG--TAAT--ACTTATTTGGCTTTT-C-ACTGGTTTTCTTT-TCTAGTATTTTAGTC--AGACTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42396909 403 + 202140232 tactgCTTCCCTAAATTATACTTGActaga-------------------------ctgtgac--------atcaaatttcacctatgacactgaatatcaggggaactttgc---aacttattctgaatacgactcagttttcttttctgta-cagagataa--agtcagtatataccccatagattcattataa-ggattatatgaaatgacacat--------gagaaggctttaaaaggacttggaaaacaataagcTT-----TTTTG-----------------------TTTTCAATAGGTTATCAGTGTTGTGAATGGTTC-ATGAAA--------AATGACTTTGGGCTCACTGAGTAACTGAAATGTTGATGCTTAATAGTGTGTTT--AATATTA---ATATAAAGGTAATAAA---TGTT---ATT-----GTTGAG--TAAT--AGTTATTTTGCTTTTCC-CCTGTTTTTCTTT-TCCACTG-TTTAGTCAGAGACTT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 285681 411 + 189746636 tactgCTTCCCTAAATTATACTTGActaga-------------------------ctgtgac--------atcaaatttcacctatgacactgattattt-ggaaactttgc---aacttattctgtatatgactcagttttcttttctgtg-cagagataa--agttggtatatacctcatagattcattataa-ggattatatgaaatgacacat--------gagaaggctttaaaaggacttggaaagcaataagcTT-----TTTTGTTC-----------TCAT-----TTTTTAATAGGTTATCAGTGTTGTGAATGGATT-ATGAAA--------AATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGATGCTTAATAGTGTGCTT--AATATTA---ATATAATAGTAATAAACGTTGTT---ATT-----GTTGAG--TAAT--AGTTATTTTGCTTTT-C--CTGCTTTTCTTT-TCCAGTGTTTTAGTCAGAGACTT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22810417 425 - 98319150 TAGTCCTTCCCTAGATC---------TAGATCATGATGATGTTGATAATGGTGATTCATAACACTGAGAAATAAAATTTCA----TATCAAATTCTATCTTGGTAATATTGTCTCCTACTACTGTCTAGATAACTCAGTTTCTTTTCCCATG-TTGCAATGA--AGTT--TGTATATCTTATACATTTCTTATAA-TG-------AGTATGATAAAATACCTACTGTAAAAGCTT---------------AAAAGGCAAATCCTAAATTATTATTCAAAAGACTAATCAAGGATGTCAATAATAGTTTATCAGTGTTGTACATGGTTG-ATGTTA--------AATGAATTTGA-CCTAAACTGGAA-------------------TAGAGTTTTTGATATATTA-----ATAGTGTTAATAATTGCAGCC---ATTT---ATGTATC--TAAT--TTTCAGCTTTCTCTT-ATTTTCTTTTTCTTTATTTATTTTATTTGCCAGAGATAG i mm9.chr16 I 498 C 0 s cavPor3.scaffold_34 8625517 407 + 24440124 TACTTCTTctctagatt---------aaaa-----------------------gtttctgac--------ataaaatctcagctctgccactgattatcttactgaaactgt---acgttattctctatgtcactcagttttcttctcagtg-caatgacaa--aatcagtgtatatctcacagatggattatga----------ggtatgaacaga-----attacacatgcat---------------gatagtaagctc-----ttaTTTTCCTAATAACCTGTCATAAAT-TTACTAACAGTTCATCAACATTGTATGTAGTTG-AAATTACCCGTTTTGATGCATAGAA----AAACAGTAATGAAAATGCTTAT------TAGTGTTTCCAGTATATTATGAGCATAACTGTAATACATGTGG-A---GTTT---GTCTAATGGTAAT--ATTAATTTGCATTTT-GAAGTGTTTTGCTTT-TCCAGTTTCTAACTCAGAGAAAT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22001724 362 - 163896628 -------------------------------------------------------ctgtggc--------atcgaatctcagtaatgccactgattatctgggtggtcttac---agcttaatctctatatgactcagtctccttttctgta--aaaaacgattggtcagtacatatgtaatagattgataataa-ga-------gaaatgacacaa--------gtacaggacttagaaggacctggaagatagcaagttc-----ttaTTTTCC-----------------------TGTTAATTTATCAGTGTTGTTTATGACTATGTATTA--------AGTGATTTTGA-CTCCATGAATAACAGAAATGTTAAC-----ATTGAATTT----TACATTATTCAGATAATAATAA----TTTAGTT---ATTT---AATTGCC--TAATAAATTCATTTTGCTTTT-A-AGAGTTTTTCTTC-TCCAGATTTCCAACGAGAG---- i oryCun2.chr14 C 0 I 388 s canFam2.chr31 28148367 398 - 42263495 tgctcttctctt-aattatactttactatC-------------------------CTGtgac--------ttcaaatatcaacaatgtcactgattatccaagtgttattac---aacttactatctataagactcaattttcttctctgtg-gaattataa--aatcagtatatatctcataaatttattataa-ggattgcataaaatcacacat--------gtaaaggctttagaaggaattagaagatggtaagctc-----ttaTT-----------------------TTCTCAATAGTATATCAATGTCATATACAGTTG-ATGTTA--------AGTGAGTTTTGGCTCAATAAATGAAT-AAATGTTAATGGTTAACAGTATTCAA--TGTATTATTAATATAACATTAATAAATGTAGTT---ATTTCACTATTGAC--TGAT--ATTCA------TTCT-T-AGTG------TTT-TT--GGTCTTTGTCCAGAGACTT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28500084 400 - 41866177 tactTCTCTCCTAAATTATACGTTGCTAGT-------------------------TGGtgac--------ttcaaatctcagctataccactgattatctgggtgtcaatac---aactt----tccatgtgactcagtttccttctctgtg-aaatgataa--agcctgtatatatttcatagatttattttaa-ggattgcgtgaaataacacac--------gtaaagtcttcagaaagaactggaaaagggtaaac---------att-----------------------ttctcaataGTATATCAGTGTTGTGTATGGTTG-ATGGTA--------AGTGAATTTGGGCTCAATGAATGACTGAAATGTTAATGCTTAATAGTGTTCAA--CATAATG-TAATGTAAC---AATAAATATAATT---ATTTAACTGTTTAC--TAAT--ATTTATTTTGCTTTT-T-AGTGTTTTTCTTT-TT--GCTTTTTGGCCAGAGACTT i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22921018 341 + 161106243 TATTTCTTTCCT-AA--------------------------------------------GAC--------TTCAGGCCTCAACTATGCCACTGGTTATCTGGACGTCATTAC---AATGT------------------------ACTCTGT-------ATAA--AGTCGGTGTATACCTCATAGCTTTATTGTAATTTATTGCCTGAAATA--ATAT--------GTACAAGATTTAGAAGGAGCTGGAAGATGGTAATCTT-----TTGTT-----------------------TTCTCAATAGTATATTACTGTTGTGTATGGCTG-GTGTTA--------CGTATGTTTTGGCTCAGAGAATG----AAATGTTAATGCTTAATAATGCT-AA--CATATTATTAACATAAAGGTAATAAATGTAATT---AGT----TGTTGAC--TAAT--ACTTA------TTTT-C-TATTTCTTTTTAT-TT--ACTTATTTTCCAGG----- i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41925480 399 + 62548349 tattgCCTCCATAAGTCATactctactata-------------------------ctatgac--------ttcaaatctcggctctgcctctgattacctgggtgaccgtaa---gacctactctttatatgactaagtttccttctctgtaaaaatgataa--agtcagtatgtatctcataaattttttataa-agattgcacaaaataacacat--------ataaagaggttaggatggtctggaatatggtaaAGTT-----TT--------------------------TTTTCAATAGTATGGTGACATTGTACTTGGTTG-ACATGA--------AATGAGTTTTGACTCAATGAAGAACGAAAATGTTAA-------TAGCGTTAAG--CATATTATGGATAC----TTCATAAAGGTAGTTCTAATT-----GTTGGC--TAAT--ATTCATTTTACTTTT-G-GGCATTTTTCTTT-TTCAGGTTTTTAGCCAGAGCCTT i loxAfr3.scaffold_13 C 0 I 7887 e rn4.chr11 73448493 1116 - 87759784 I a score=51251.000000 s hg19.chr4_gl000194_random 162512 46 + 191469 CTT-AAGTC-TCCTCAAGTGTGTACACATTTCTTAAATTTGTTGGAAA s panTro2.chr4_random 3563058 45 + 6711082 CTT-AAGTG-TCCTCAAGTGTGTACACATTTCTT-AATTTGTTGGAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42397312 47 + 202140232 CTT-AAGCCTTCCTCCAGAGTGTACCCATTTCTTAAATTTGTTGGAAA i ponAbe2.chr3 C 0 I 939 s rheMac2.chr2 286092 46 + 189746636 CTT-AAGTC-TCCTCAAGAATGTACACATTTCTTAAATTTGTTGGAAA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22810842 25 - 98319150 TAA-AGCCT-TTT-CAATAATATATACA-------------------- i mm9.chr16 C 0 I 1066 s cavPor3.scaffold_34 8625924 44 + 24440124 TTT-AGGCC-TCT--AATCATGGACGTCTGTGTTAAGTTTGGTGGAAA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22002474 46 - 163896628 TTT-AAGCC-TTTGCAATAATGTATTCATTTCTGATATTTGGTAGAGG i oryCun2.chr14 I 388 C 0 s canFam2.chr31 28148765 46 - 42263495 TTTAAAATC-TTTTCAAGAGTGTATACATTTCTCAAG-TTGATGGAAG i canFam2.chr31 C 0 C 0 s equCab2.chr26 28500484 46 - 41866177 TTT-AAGTC-TCTCCAAGAATGTATGCATTTCTTAGGTTTGGTGGAAG i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22921359 27 + 161106243 ---------------------CTATGCAATTCTTAAGTTTGATAGATG i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41933766 46 + 62548349 CTG-AAGTC-TTCTTAATTGTATGTATATTTCTTATATTTGGTGAAAG i loxAfr3.scaffold_13 I 7887 C 0 e rn4.chr11 73448493 1116 - 87759784 I a score=518698.000000 s hg19.chr4_gl000194_random 162558 309 + 191469 GTACCAAATTTA---AGATATCTTGCATTTTTTTTCTTCCTTAGTAAACACTAAATTCCATCACACAGCAGAAAAAGGGCTCTGTTATTGTCGGTACAATGGTTTAATATTCACT--------TTTATTCCCTATATCA----TAGTTCTGATTTAATTACTATTTAGA--------ATAAAACTTGTTCCTTATTATATGCATTCATAATTATAAAATTTGTGTTTTA-------ATGCCT-TCTACAAATATACTGTGCTTTTCTTTATTTCCTTATATCTTTTACTGTTGTATGATCCTGGTATTTGAAATCTCATTAAGTGTTGTTTGGGG-ATTTG s rheMac2.chr2 286138 308 + 189746636 GTACCAAATTTA---AGATCTCTTGCA--TTTTTTCTTCCTTAGTAAACGCTATATTCCATCGTGCAGCAGAAAAAGGGTTCTGTTATTGTCAGTACCATGGTTTAATATTCACT--------TTTATTCCCTGTATGG----TGGTTCTGATTTAATTGCTATTTAGA--------ATAAAACCTGTTCCTTATTATGTGCTTTTGTAATTACAAAATTTGTGTCTTA-------ATGCCT-TCTACACATATACTGTGCTTTTGTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCGTTAAGTGTTATTTGGGGAATTTG i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3563103 308 + 6711082 GTACCAAATTTA---AGATATCTTGCA-TTTTTTTCTTCCTTAGTAAACACGAAATTCCATCACGCAGCAGAAAAAGGGCTCTGTTATTGTTGGTACAATGGTTTAATATTCACT--------TTTATTCCCTGTATCG----TAGTTCTGATTTAATTGCTATTTAGA--------ATAAAACTTGTTCCTTATTATATGCATTCATAATTATAAAATTTGTGTTTTA-------ATGCCT-TCTACACATATACTGTGCTTTTCTTTATTTCCTTATATCTCTTACTGTTTCATGATCCTGGTATTTGAAATCTCATTAAGTGTTGTTTGGGG-ATTTG i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8625968 299 + 24440124 ------GGTTCTTTCAGGCATTTTGTA--TGTTCCTTTCCTTTGTAAACATTACATTCTGTCATGCA-------AAATATTTTGTTGTTATTGGTGCAATAGTTTAATAGTCACTCTTATTGGTGCAATAGTTTAATAGTCACTGGTTCTGGTTTAATTGGTATTTAGA--------ATAAAGCATGTTGTTTATTACATGCTTTCTTAATTTCAAAATTTGTGTTGCG-------ATGCCT-TCTACACGTATACTGTGCTTTTCTCTCTTTCT----ACCTCTCACTGTTTCATAATCATGGCATCTGAAAT------ACCTGCTATTTGAAG-GCTTT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22002520 280 - 163896628 ------AATTAT---AGGCATCTTGTA--TTCTCATTTTCCTT----------TACTTTGTCATGCAGGAG---AAAGGTTTTGTTGCTGTTGGTATAATGGTTTAATATTAACT--------TCCAATCCCTGTGTGG----TAGTTCTGATTTAATTGGTGTTAAGA--------ATAAAGC---TTGCTACTTAAATGCTTTCGTAATAACAAAATTTGTGTTTTA-------ATATAT-TCTACTCATATATCATACTTTATTTTCTTCCC----A-TTCTTACTGTTTCATAACCATGACACCTGAAATCTTATAAAATGTTATTTGGGg-gcctg i oryCun2.chr14 C 0 I 335 s canFam2.chr31 28148811 302 - 42263495 ------GATTTTTATAGGCATTTTATG--TTATGCTTTCCTTAGCAAATGCTAAATTTCATCATGCAGAAGAATGAGATTTTTGTTTTTGCTGGTAT-ATGGTTTAATATGTCCT--------TGTATTCCTTGTGTGG----TGGTTTTGATTTAATTGGTGTTAAGA--------ATAAAGTTCACTATTTATTATAGGTTTTCACAATTAA-GAATTTGTGTTTTA-------ATATAT-TCTATACATATACTGTGCTTTTCTTTATTTTCTTAAGTCTTTTACTGTTTCATAATCATGGCATTTGAAATCTCGTAAGATGTTATTTGGGG-GCTTG i canFam2.chr31 C 0 C 0 s equCab2.chr26 28500530 303 - 41866177 ------GATTTTTATGGAGATCTTGTG--CTATGCTTTCCTTAGTAAATGCTAAATTCCATCATGCAGAAGGAAGAGAGTTTCGTTACTGTTGGTACAATGGTTTAATATTCATT--------TTTATTCCCTGTGTGG----TACTTCTGATTTAATTGGTGTTTAGA--------ATAAAGCTCCCTACTTATTATCTGCTTTCATAATTGC-AAATTTGTGTTTTA-------ATACCT-TCCACATATATACTGTGCTTTTCTTTATTTCCTTAAATTTTTTACTGTTTCATAATCACGGCATTTGAAATCTCATAAAATGTTATTTGGGG-GCTTG i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22921386 306 + 161106243 ------AATTCTTAGATA-ATCTAATT--TTAGACTTTCCTTAGTAAATGCTAAATTCCATCACGTAGGAGAA----AGTTTTGTTACTGTTGGCACAGTGGTTTAATATTCACT--------TTTATTACCTGTGGGG----TGGTTCTGATTTAATTGGTGTTTAAA--------ATAAAGCTTACTACTTATTATATGTTTTTATAACTGC-AAatgtatatataaattatatatatatgtatatatacataCTGTGCTTTCCTTTATTTCCTTAAATCTTTTACTGTCTCATAATCATGACATTTGAAATCTCATAAAACATTATTTGGGG-ACTTG i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41933812 311 + 62548349 ------GATACTTACAGGCATTTTATA--TTGTGTTTTTCTTAGTAAATAGTAAATTCTGTCATGCAACAGAATGAAGGCTTTGTTGTTGTTAATACCATGGCTTAATATTCACT--------TTTATTCCTTGTGTGG----TA-TTCTGATTTAATTGGTGTTCTAATTTAATTGGTTAAACTTGCTACTTATGATATACATTTATTATTGCAAAATTCGTGTTTCA-------ATGCCT-TCTACACATATACGGTGCTTTTCTTTATTTCCTCAAATCTTTTAGTGTATTACAGTCATGGCATTTGAAATCTCATAAAATGTTACTTGGGG-GCTTG i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73448493 1116 - 87759784 I e mm9.chr16 22810867 1066 - 98319150 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=289081.000000 s hg19.chr4_gl000194_random 162867 129 + 191469 CTGGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAAACATAATAGGAGACGGAATTCACAGCAGAGTAATAAGCCTCCCAC-TTTAGGCAATATATTTGTGATTGACATGACTTTG s rheMac2.chr2 286446 129 + 189746636 CTGGGAATGCCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAATAAGCCTCCCCC-TTTAGGCAATGTATTTGTGATTGGTATGACTTTG i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3563411 129 + 6711082 CTGGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAAACATAATAGGAGAAGGAATTCACAGCAGAGTAATAACCCTCCCGC-TTTAGGCAATGTATTTGTGATTGGTATGACTTTG i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8626267 128 + 24440124 TTGTTTATGTCATCTATATAGTAATGTCTCAAGTATGTCGCAT-TTTAAAGCATAATGGAAGATAGATTTTGTAGCACAATAATAAACATCTCTC-TTTAGGATTTGGGTTTGTAAATCACATGAATTTG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22003135 128 - 163896628 CTGGGAATGTCATTTACACAGTTATGTGTCAAGTTTGTAGTGTCTTTAAAGCATACTAAGAAATGGAATACATAGCAAAGTAGTAAGCATCTCTC-TTTAGTACAGATATTTGTGATTGGTATGACTTT- i oryCun2.chr14 I 335 C 0 s canFam2.chr31 28149113 129 - 42263495 CTGGAAATGTCATTTACATAGTAATGGCTCAAGTTTGTAGTATCTTTAAAGCATAAAAGGAGATGGACTTCGTAGAAGAGGAATAAACATTTCTT-TTTGGGGTATGTATTTGTGATTGGTATGACTCTG i canFam2.chr31 C 0 C 0 s equCab2.chr26 28500833 129 - 41866177 CTGGAAATGCCATCTACATAGTAATGGCTCAAGTTTGTAGCATCTTTAACACATAATAGGAGATGGAATTCATAGCAGAGTAATAAACATCTCTC-TTTAGGCTCTGTATTTGTGAATGGTATGACTTTG i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22921692 130 + 161106243 CTAGAAATGTCATCTACAACGTAATGGCTCAAGTTTGTAGCATTCTTAAAGCATAATAGGAGATAGAATTCATAGCAGAGTAATAAACATCTCTCTTTTAGGGTCTCTATTTGTGGCTGGTATGAATTTG i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41934123 129 + 62548349 CTGGGAATGTCATCTACATAGTAATGGCTCAAGTTTGTAGCATCTTTAAAGCATAATTGGAGATGGAATTCAGAGTAGAGTAATAAACATCTCTC-TTTAGGGTATGCATTGGTGATTGGTCTCGCTTTT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73448493 1116 - 87759784 I e mm9.chr16 22810867 1066 - 98319150 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=56334.000000 s hg19.chr4_gl000194_random 162996 68 + 191469 TTCCCAGAGGGCAGTTAGCAACACAATATTATGGCTATGTGTACAAGGAAAA----------------------------------------CAA----ATTTTAAAAATCT- s rheMac2.chr2 286575 72 + 189746636 TTCCCAGAGGGCAGTTAGCAACACAATATTATGGCTATGTGTACAAGGAAAA----------------------------------------CAGACACATTTGTTTAATCT- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3563540 68 + 6711082 TTCCCAGAGGGCAGTTAGCAACACAATATTAAGGCTATGTGTACAAGGAAAA----------------------------------------CAA----ATTTTAAAAATCT- i panTro2.chr4_random C 0 C 0 s rn4.chr11 73449609 42 - 87759784 TTTTCACAGCACAGTCAG------------------GTTAATAATATGAA----------------------------------------------------TCCAAAATAT- i rn4.chr11 I 1116 I 13 s cavPor3.scaffold_34 8626395 68 + 24440124 CTCCCAGAAGGCAGTAAGCAGTACAATTTTATGACTGTAAATACAAGGAAAA----------------------------------------ACA----AATTTTAAAATGT- i cavPor3.scaffold_34 C 0 I 82 s oryCun2.chr14 22003263 105 - 163896628 CTCCCAGAGGGCAGTTAG---CATCATGTTATGACTGTGTATACAGGAAATATTAGATAAAGTCCCTTTTTTACACAGAATTAATTTTTTTTGCA----AAATCTAAAATCT- i oryCun2.chr14 C 0 I 29 s canFam2.chr31 28149242 58 - 42263495 CTCCCAGAGGGCAGTCAGCAACACAGAAATATGACTGTGTGTGCAAGGATAA----------------------------------------AAA----T-------AA---- i canFam2.chr31 C 0 C 0 s equCab2.chr26 28500962 59 - 41866177 CTCCCAGAGGGCACTTAGCAACACAGCGTTATGACTATGCGTACAAGGATAA----------------------------------------AAA----C------AAA---- i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22921822 58 + 161106243 TTTCCAGAGGGCAGTTAGCAAAACAGCATTATGACTGTGTGCAGAAGCATAA----------------------------------------AAC----A-------GA---- i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41934252 68 + 62548349 CTCCCAGAAGAC----AGCAACACAACATTATGACTGTATATACAAGGATAA----------------------------------------AAA-CAAACAAGCAAAATCGC i loxAfr3.scaffold_13 C 0 C 0 e mm9.chr16 22810867 1066 - 98319150 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=-71609.000000 s hg19.chr4_gl000194_random 163064 15 + 191469 CCTTTAAAAA------------------------------------------------------------------------------------------AAACA s panTro2.chr4_random 3563608 15 + 6711082 CCTTTATAAA------------------------------------------------------------------------------------------AAACA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 286647 15 + 189746636 CCTTTGAAAA------------------------------------------------------------------------------------------ACACA i rheMac2.chr2 C 0 C 0 s otoGar1.scaffold_106215.1-352619 267495 88 - 352619 GCTTTACAAATAGTGTAAGTAGATTGGA-TTTTTAGAGCA----------------TAGTTGGTTGAATAACTTGAATCCAAAAGATCACTGCTTGTGACAGACA i otoGar1.scaffold_106215.1-352619 N 0 I 14998 s rn4.chr11 73449664 5 - 87759784 ----------------------------------------------------------------------------------------------------ATATC i rn4.chr11 I 13 I 8 s cavPor3.scaffold_34 8626545 84 + 24440124 GTTTTATAAATGACATATACAGATGGAATTTTTCAAGGCATACCTAATAATCTTAAC---------------------CTAAAACAGCATTGCTTGTGATACATC i cavPor3.scaffold_34 I 82 I 8 s oryCun2.chr14 22003397 62 - 163896628 GCTTTGCAAATGGCATAAACTGATGGAA-TTTTCTGGGCATGCTT------------------------------------------CATTTCATAATCTGAATC i oryCun2.chr14 I 29 I 18 s canFam2.chr31 28149300 11 - 42263495 ----------------------------------------------------------------------------------------------TAAGTGAAACA i canFam2.chr31 C 0 I 4 s equCab2.chr26 28501021 11 - 41866177 ----------------------------------------------------------------------------------------------TAAGTAAAAAA i equCab2.chr26 C 0 I 4 s bosTau4.chr1 22921880 11 + 161106243 ----------------------------------------------------------------------------------------------CAAGAAAAAAA i bosTau4.chr1 C 0 I 4 s loxAfr3.scaffold_13 41934320 15 + 62548349 ------------------------------------------------------------------------------------------CCTTTAACCTCAACA i loxAfr3.scaffold_13 C 0 I 139 e mm9.chr16 22810867 1066 - 98319150 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=-37387.000000 s hg19.chr4_gl000194_random 163079 17 + 191469 GTTCCC-----------------------------AATCC------TAACC-----A---- s panTro2.chr4_random 3563623 17 + 6711082 GTTCCC-----------------------------GAACC------TAACC-----A---- i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 286662 17 + 189746636 GTGCCC-----------------------------CAGCC------TAACT-----A---- i rheMac2.chr2 C 0 C 0 s rn4.chr11 73449677 17 - 87759784 GTGCTG-----------------------------CAGTC------TATCT-----A---- i rn4.chr11 I 8 C 0 s cavPor3.scaffold_34 8626637 28 + 24440124 GTACAC-----------------------------TAGCCAAGTAATATCTTGCAGA---- i cavPor3.scaffold_34 I 8 C 0 s oryCun2.chr14 22003477 17 - 163896628 GCGCTG-----------------------------TGGCC------TAGAG-----A---- i oryCun2.chr14 I 18 C 0 s loxAfr3.scaffold_13 41934474 50 + 62548349 AATTCAGAAGAGCATTGTGATGCACATTTAGAAAATGGCC------TAGGG-----AGCTA i loxAfr3.scaffold_13 I 139 C 0 s bosTau4.chr1 22921895 1 + 161106243 --------------------------------------------------------A---- i bosTau4.chr1 I 4 I 170 s equCab2.chr26 28501036 1 - 41866177 --------------------------------------------------------A---- i equCab2.chr26 I 4 I 418 s canFam2.chr31 28149315 1 - 42263495 --------------------------------------------------------A---- i canFam2.chr31 I 4 I 197 e mm9.chr16 22810867 1066 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=185214.000000 s hg19.chr4_gl000194_random 163096 172 + 191469 GT----ATCAT------GCACAGAA-TCC----------------GTTTCCACCTCTTCATATGGAAGCAGCTCTGGGTGGACATCTAGAAAGTTGGATAACTATTTATCACATATGATCTGCAA--AGGGAGAGA-TTTACAAGAAAGTATTAAATTTGATCCATAGGAAAGCAAAATC-AAAAATCAATGAATTTTCC--------------------------------ATT s panTro2.chr4_random 3563640 172 + 6711082 GT----ATCAT------GCACAGAA-TCC----------------GTTTCCACCTCTTCATATGGAAGCAGCTCTGGGTGGACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGTAA--AGGGAGAGA-TTTACAAGAAAGTGTTAAATTTAATCCATAGGAAAGCAAAATC-AAAAATCAATGAATTTTCC--------------------------------ATT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 286679 172 + 189746636 GT----ATCAT------GCACAGAA-TCC----------------ATTTCCACCTCTTCTTATGGAAGGAGCGCTGGATGAACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGCAG--AGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAATC-AAAAATCAATGAATTTTCC--------------------------------ATT i rheMac2.chr2 C 0 C 0 s rn4.chr11 73449694 171 - 87759784 AT----GTCAC------GCAAAGAACCCT----------------GGTG--------------GGAAATGACTCTGAGTAGCT-------AAGTTGGATGGATGTTCATGGCATATGTTCTGAAA--AGGAGGTTG-CC---AAAGATACGCTAAGCTTAAGTCAGAGAAATACCAAATC-----------GAAGGCTACTGCACTCAGCAAGGTGTGATAAGAGATGCCTAATA i rn4.chr11 C 0 I 193 s cavPor3.scaffold_34 8626665 164 + 24440124 AT----ATCACTGTTGGGCAAAGGG-CCT----------------GGTGAGATCTCTACTTATGGAAGTATCTCTATATAGACAGCTAGAAAGTTAGATGGACATTTATA--ATATGATCTGCAA--AGG-GACAA-CCTATAAGAATGTGTTAAATTTAATTCA-AGTGACAAAAAATT-----------GAACTTTAC--------------------------------ATA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22003494 158 - 163896628 GG----ATCAT------GCAGAGAATCCC----------------TGTAGGATGTAGG-----GCTTGTAGCTCTGGGTGGGCAGCCAGGATGATGTATAGATATTTGTTACATATGATCTGCAATTAGA-GAAGA-TTTATAAGAAAGTATTAAATTTAATATAGAGAAATAAAAAGTC------------AACTTTCC--------------------------------ATA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22922066 176 + 161106243 GT----ATCAA------GCAAATTA-TCCCTGTTTGATACT-GGGTTTTCCATTCCTTCCTATGGAAGTAGCTCTGCTTGTACAGGTAGAAAGTT-----------TATTACACATCACCTGCAA--AGGAAGAGAGTTTAGAAGAAAGTGCTAAA-TTAATCCAGAGGAATGCCAAATC-AAAGAACAATTAGCTTTCC--------------------------------ATA i bosTau4.chr1 I 170 C 0 s canFam2.chr31 28149513 193 - 42263495 GTATCAATCAA------ACAAAGAA-TCCTTGTTGGGTACA-AGGCTCTCTACTTCTTCCTGTGAAAGTAACTCTGGGTGTATACCTAGAAAGTTAAGTGTATATAAATCATACATGACCTACAA--AGGGAGATAGTTTAAAAGGAAGTGCTAAATTTAACCCAAAGGAATGCCCAACCAAAAAAACAATAAGCTTTCC--------------------------------ATA i canFam2.chr31 I 197 C 0 s equCab2.chr26 28501455 188 - 41866177 GT----ATCAT------GTAAAGAA-TCCCCCTTGAGTATA-GGGCTTTCTACCTCTGCCGATGGAAGAGGATCTGAATATGCAGCTAGAAAGTTGGGTTGATATTTACCACATATGACCTGCAA--AGGGAAACAGTTTAAAAGAAAGTGCTTAATTTAATCCAGAGGAATGTCAAATC-AAAACACAATGAGCTTTCC--------------------------------AAA i equCab2.chr26 I 418 C 0 s loxAfr3.scaffold_13 41934524 175 + 62548349 GC----GTCAT------TTAGAGAA-TCTGTGTTGGGTTTAGGGGCTCTCTACCTCTCCTAATGGA------------TGTATAGCTAGAAAGTCAAATAGATATTTGCTACAAATATCCCACAA--AGGGACAGGATTTATATGGA-GTGCTAAATATAACACAGAGGCATGCCAAATC--AGAAACAATAAACTTTCC--------------------------------ATA i loxAfr3.scaffold_13 C 0 C 0 e mm9.chr16 22810867 1066 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=35549.000000 s hg19.chr4_gl000194_random 163268 53 + 191469 TGTAGTTTTCCCT---AGGGGCTCTAATCTCAAGATGGCTTAAATGCAT-TA-----------------GAATT s panTro2.chr4_random 3563812 53 + 6711082 TGTAGTTTTCCCT---AGGGGCTCCACTCTCTAGATGGCTTAAATGCGT-TA-----------------GAATT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 286851 53 + 189746636 TGTAGTTTTCCCT---AGGGGCTCTACTCTCAAGATGGCTTAAATACAT-TA-----------------GAATT i rheMac2.chr2 C 0 C 0 s rn4.chr11 73450058 49 - 87759784 --TGAACTTTTCC---AT-GTCTCCAGGTTTCAGACAGCT--TATGTGTATA-----------------GGATG i rn4.chr11 I 193 I 374 s cavPor3.scaffold_34 8626829 53 + 24440124 TGTTACTTTCCTC---ATGGTCTCTACTCTCAAGAGATCTTAAATACAT-TA-----------------GAATT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22003652 27 - 163896628 TGTTCTTTTCCCC---GTAGACTGTGAATT-------------------------------------------- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22922242 34 + 161106243 TGTTCTTTTCCCC---A-GGGTCCTACTTTCAAGATGG------------------------------------ i bosTau4.chr1 C 0 I 221 s canFam2.chr31 28149706 53 - 42263495 TGTTCTTTTTCTC---ATGGGTGCTACTCTCAAGATGGCTTAAATGAGT-TA-----------------GAATT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28501643 56 - 41866177 TGTTCTTTTCCCCAGAATATGTGCTATTCTCAAGATGGCTTAAATGCAG-TA-----------------GAATT i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41934699 69 + 62548349 TGTTC-TTTCCCC---ACTGGCTTTACTTTCAAAATGGTTTAAATGAAT-TACCcactgccacccagttgattt i loxAfr3.scaffold_13 C 0 C 0 e mm9.chr16 22810867 1066 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=76137.000000 s hg19.chr4_gl000194_random 163321 110 + 191469 -------------------------------------------------------CAATGACTAGGCA-------------------------------------------------------CAATTGTTTGTTAGTG-------------------------------------------ACATAAAAGCAAGGT--AAGCATTTCTGCTTTATGAGTCCAAGCACAGGGACACTTGGTTTTCTTTGGAAGGATATCATAAAG s panTro2.chr4_random 3563865 110 + 6711082 -------------------------------------------------------AAATGACCAGGCA-------------------------------------------------------CAATTGTTTGTTAGTG-------------------------------------------AGATAAAAGCAAGGT--AAGCATTTCTGCTTTATGAGTCCAAGCACAGGGACACTTGGTTTTCTTTGGAAGGATATCATAAAG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 286904 109 + 189746636 -------------------------------------------------------CAATGACTAGTCA-------------------------------------------------------CAAGTGTTTGTTGGTG-------------------------------------------ATATCAAAGCAAGGT--AAACATTCCTGCTCTGTGAGTCCAAGCACAGGGACAC-TGGTTTCCTATGGAAGGATATCTTAAAG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22811933 84 - 98319150 ---------------------------------------------------------CTG---------------------------------------------------------------TGAGTCTTTATTGGTG-------------------------------------------GTGCCAGAG-ATAAT-------------ATTTGTAAGTCAGATCACAAGAACACCCAGTTTCCTTT----GGCTATCACAGAA i mm9.chr16 I 1066 C 0 s rn4.chr11 73450481 86 - 87759784 -------------------------------------------------------TTCTG---------------------------------------------------------------TGAGTGTCTATTAGTG-------------------------------------------GTGCCAGAG-ACAGT-------------ATTTCTAAGTCAGATCAGAAGAACACCCAGTTTCCAGT----GACTGTCACAGAA i rn4.chr11 I 374 C 0 s cavPor3.scaffold_34 8626882 108 + 24440124 -------------------------------------------------------CCCTGAATAATTAC-----------------------------------------------------CAAAGTTTTCATTTGTG-------------------------------------------ATATCAAAGCATACT--AAGTGTTCTTGATTTGTGAATCCAAGGATAAGGACACTTGATTTCCACT----GAATAGCGCAAAA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22003679 107 - 163896628 --------------------------------------------------------CTTGAATAGCCAC------------------------------------------------------AAAATCTTCATTAGTT-------------------------------------------ATAGAAAAA-GCAAACAAAACATTCTTTTTCTGTGACTCCAAGTACAAGGACATCTGATTTCTTTT----GGACATCCCAAAG i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22922497 110 + 161106243 -------------------------------------------------------CTATGAATAGTTACAA--------------------------------------------------AAAAAAACTTCATTAGTG-------------------------------------------ACATCCTAGCTAAAG--AAAT-CTCTTGCTTTGTGAGCCCAAGCACATGGACACATAGTTTCCCTT----GGATATCAGGAAG i bosTau4.chr1 I 221 I 278 s canFam2.chr31 28149759 108 - 42263495 -------------------------------------------------------CTATAAATAATTAT-----------------------------------------------------AAAATTCTTCTTTAGTG-------------------------------------------ATATCCAAGCAAGCT--AAATGTTCTTGCTCTGTGAACTCAAGCACAAAAACACACGGTTTCCTTT----GTATATCACAAAG i canFam2.chr31 C 0 C 0 s equCab2.chr26 28501699 104 - 41866177 -------------------------------------------------------CTATGAATGATTAC-----------------------------------------------------AAAAGTCTTCATTCGTG-------------------------------------------ACATTCAAGCA------AAATGTTCTTGCTCTGTGAGCCCAAGCACAAGGACTCATGGTTTCCTTT----GGATATCACAAAG i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41934768 251 + 62548349 tgactcatagcaaccccataagacagagtacaactgcaccatagggtttccaaggctgtaattctttacagaagcagagtaccacatctttctctcatggagcagctgatgggttcgaaccactgacttttggttagtggccgagcacttaaccactgtgccaccagTGCTCCTCATCATTTACATCAGAGCAAATT--AAATACTCATGCTCTG--------AGCCTAAGCACATCTGTTTTACTTT----GGATATCTTAAAA i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=32281.000000 s hg19.chr4_gl000194_random 163431 62 + 191469 GCAA---TGTTTA-TGAGTAATCCCTCATTGTCTTTTCTTCTGT---AACATTCAATGCTATGTACTAA s panTro2.chr4_random 3563975 62 + 6711082 GCAA---TGTTTA-TGAGTAATCCCTCATTGTCTTTCCTTCTGC---AGCATTCAATGGTATGTACTAT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 287013 62 + 189746636 GCAA---TGTTTA-TGAGTAATCCCTCATTGTCTTTTCTTCTGT---AGCATTCAATGGTATGTACTAT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22812017 55 - 98319150 ACAA---TGGA---GAAACGATCA--AATTG---TTTCCTTTAC---AGTGTTAACGTTTCTATAGTAT i mm9.chr16 C 0 C 0 s rn4.chr11 73450567 58 - 87759784 ATGATGTTGGA---GAAATGATCA--ATTTG---TTTCCTCTAC---AATGTTAATATTTCTATAGTAT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8626990 62 + 24440124 GCAA---TGAATG-GAGATAATCAGTAGTTA---TCTTAACTACGGTAATGTTCAGGTATCTGCATTAT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22003786 58 - 163896628 GCAA---TGTTCA-TAAGTCGTCACTGACT----TTTCCCCCGT---TACATGCATATGCCTGTATTAT i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28501803 60 - 41866177 ACAA---TGTTTACCAAGTAACCA---GTTGATTTTCCCCCTGT---TATGTTCACGTGTCTGTATTAT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28149867 58 - 42263495 GCAA---TGTTTACCAAGTAATCA---GTTGATTT--CCCCCAT---TTTGTTGACATGACTATATCCT i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41935019 62 + 62548349 ACAA---AGTTTGCAGAATAATCACTAGTTT-TTTTTCCTATGG---ACTGTTCACATATCTGTATTAA i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22922607 278 + 161106243 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=35426.000000 s hg19.chr4_gl000194_random 163493 98 + 191469 AATTTAGAAATGAAAACTACTTA----AAGACCACCTGCTAAGT-TTCATGTATTTCAAATTCTCAGATCCTGAGTGTTTAAAT----ATGTC-TGTAT---TTCTTCATG s panTro2.chr4_random 3564037 98 + 6711082 AATTTCGAAATGAAAACTACTTA----AAGACCACTTGCTAAGT-TTCATGTATTTCAAATTCTCAGATCCTGAGTGTTTAAAT----ATGCC-TATAT---TTCTTCATG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 287075 98 + 189746636 AATTTAGAAACGAAAACTACTTA----GAGACCGCTTGTTAAGT-TTCATATATTTTGGATTCTCAGACCCTGAGTGTTTAAAT----ATGCC-TATAT---TTCTTCATG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22812072 61 - 98319150 AATGT---TATCTGAACTACGTAGAT-AAACTTACTTCCTTTTTATTTATTTATTTCAGAATTTA---------------------------------------------- i mm9.chr16 C 0 I 1107 s rn4.chr11 73450625 81 - 87759784 AATGTACCAACTTGAACTATGCAGAC-AAACTTACTTCTTAAAT-TCCAAGTATCATAAAATCTC-ATAGCCTAATGCTGAAAT--------------------------- i rn4.chr11 C 0 I 448 s cavPor3.scaffold_34 8627052 105 + 24440124 AATAAA--ACTTTAAGACATCCAACT-AAGCCCACTTTTTAAGT-TTTA-GTATCTTAACATCTT-GAGCATGAATGCCTATGTTTGTACACTGTACAATTTTTTTTCTTG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22003844 94 - 163896628 TATTTA------GAAACTATGGATA--AAGGTGACTTGTTAAAT-CTCAAGTATCTCAGAATCTCAGAGTTTGAATGCTTAAAT----AAACT-TACAA---TTCAAATTG i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22922885 89 + 161106243 ACTTTAGAAACTAGAACTACTC----AAAGCCAACTTGTT--GC-AGCAAGTTTCTTAGGATCT-------TGAATGATTGAGT----ATGCC-TGGAT---TTTTGCATG i bosTau4.chr1 I 278 C 0 s canFam2.chr31 28149925 86 - 42263495 ACTTTAGAAACTGGAACTACTCAGATAAAATCCACTTG-----T-GTAAAGTTTCTCAGAATCTCAGAACGTCAGTGTTTTAAT----CTGCC-TAT-------------- i canFam2.chr31 C 0 I 9 s equCab2.chr26 28501863 100 - 41866177 ATTTTAGAAACTGGAACTACTCAGATAAAGTCCACTTGTT--TT-ATCAAATCTCTCAGAATTTCACATCCTGACTGCTTGCAT----CTGCC-TGTAT---ATATATATA i equCab2.chr26 C 0 I 209 s loxAfr3.scaffold_13 41935081 102 + 62548349 AATTTAGAAACTGGAACAATCCAGAAAAAGTCCACTTGTTAAGT-TCAAAGTCTCTAAAAATCCCAGGGCCTGAAAACTTGAAT----ATCCC-TAAGT---TTCTGCCTG i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=32849.000000 s hg19.chr4_gl000194_random 163591 23 + 191469 AAAAAAACATAATCTTTGCCAAG s panTro2.chr4_random 3564135 23 + 6711082 AAAAAAACATAATCTTTGCCAAG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 287173 22 + 189746636 -AAAAACCATAAGCTTTGCCAAG i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8627157 21 + 24440124 -AGAAATAAGGATCTTTGTTAA- i cavPor3.scaffold_34 C 0 I 1 s oryCun2.chr14 22003938 22 - 163896628 -AGAAACCAAGATCTTTGCAGAG i oryCun2.chr14 C 0 I 338 s bosTau4.chr1 22922974 22 + 161106243 -AAAAATCAGGATCTTCGGCTAG i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28502172 23 - 41866177 AAGAAATCAGGATCTTTGCCTCA i equCab2.chr26 I 209 C 0 s canFam2.chr31 28150020 23 - 42263495 AAAAAATCAGGATCTTTGCCTAG i canFam2.chr31 I 9 C 0 s loxAfr3.scaffold_13 41935183 21 + 62548349 --AGAAACAAATTCTTTGCTGAG i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73450706 448 - 87759784 I e mm9.chr16 22812133 1107 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=238312.000000 s hg19.chr4_gl000194_random 163614 187 + 191469 TTAGAAAAAGAAAAACTCATATTCCCATTTTTAACTAAAGGTAATCAGAAATTTGGACAGTTTTTAGCCTTCA---------ATACAT-------TATGTAAT---TTGGGTAACAGGCTGAATAAAA------GTAAGGAACTTCAGTTAAATTCAGAGAGAAGCTAGT---AATTATTTCTAAGACTCAAATGTATAGAA--------CAGATCTCTGATA s panTro2.chr4_random 3564158 185 + 6711082 TTAGAAAAAGAAAG--TCATATTCCCATTTTTAACTAAATGTAATCAGAAATTTGGACAGTTTTTAGCCTTCA---------ATACAT-------TATGTAAT---TTGGGTAACAGGCTGAATAAAA------GTAAGGAACTTCAGTTAAATTCAGAGAGAAGCTAGT---AATTATTTCTAAGACTCAAATGTATAGAA--------CAGATCTCTGATA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 287195 183 + 189746636 TTAGAAAAAGAAAG--TCATATTCCCATTTTTAGCTAAATGTAGTCAGAAATTTGGACAGTTTTTAGCCTTCA---------ATACAT-------TATGTAAT---TTGGATAATAGACTGAATAAAA------GTAAGGAACTTCAGTTAAATTC--AGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTATAGAA--------CAGATTTCTGATA i rheMac2.chr2 C 0 C 0 s rn4.chr11 73451154 198 - 87759784 TTAGGAAAAGAGAAG-GCATATTCTAAGTTTCAAGTTGAGACAATGGGAAATTTTGACAAATTGTAATCTGCC---------ACATAT-------TATGGAATCTGTCGGATAAGTATAAAAGTT--A------AAAAGGAATTTCATTGAAGCTTAGACAGAATTTAATATAAGTTGTTTTTAAGAATAAGCTGCATAGAACCGCTTGATATCTCTCTGATA i rn4.chr11 I 448 C 0 s mm9.chr16 22813240 194 - 98319150 --AGAAAAAGAGAAG-CCATATTCTACATTTCAAGCTAAGACAGTGGGAAATTTTGACAGATTGTAGCCTGAC---------ACATAT-------TATGAAATCTGTTGAATAAGTATAAAAAGTAAA------AAAAAAAAATTCATCTAAGTTTAGACAGAATTTAATATAAGTTGGTTTTAAGGATAAACTATGTAGGACAAT----TAGCTCTCAAGTC i mm9.chr16 I 1107 C 0 s cavPor3.scaffold_34 8627179 157 + 24440124 TTAG-----GAGAAG-ACATATTCCCATTTCCATATT-----AATAAGAAATTTAAAC--ATTTTTGGCTTCT---------ATATAT-------TATGAAA----TTGGATAA-TACACAGAAAAAA------GTAACAAATTTCAGTGGAATTCAGAAA------------------TTTTTAAATTAAAATGTATAGAA--------GAGAACTCTTGTA i cavPor3.scaffold_34 I 1 C 0 s oryCun2.chr14 22004298 165 - 163896628 ----ttaaagaaaaa-----------------aaATTAATTCGATCAGAAATTTGGGCAGTATTTAGTCTCCA---------GTATAT-------TATGTACT---TTGGGTAA---TAAGAAAAAAA------GTAATGAATTTCAATCAAAGCTAAAGAAAAGCTAGTAGAAATTGTTTCTAAAACTGAAATGTATAGAGCATT---------CTATGGTT i oryCun2.chr14 I 338 C 0 s bosTau4.chr1 22922996 185 + 161106243 TTATGAGAAAAGAAAAAAAAAATTCTATTCTCAAATTAATCAAATCAGAAGATTTGGCAGGTTTTAGTCTTTG---------ACATATA-ATATATATATAAT---TCTCGTAA-TAGCAGAATACAAGTAAAGGTAAAGGATTTTGATTAAATTCATAGAGAAGCCA---GAAATTATTTACAAGACTAAATTTTATAAAA--------------------- i bosTau4.chr1 C 0 I 322 s equCab2.chr26 28502195 192 - 41866177 TCAAGAAAAGAAAGAAACATATTGCCATTTCCAAATTAATCTAATCAGAAAACTGGGCCGTTTTTAGCCTTCA---------ATATGT-------TATGTAAT---GCTGGTAA-TAGCAGAATACAA------GTAAAGGATTTAGGTTAAATTCATACAGAAGCTAGTAGAAATTATTTCTAAGACTAGAAATTATCAAAAAA-----GAGATCTTCAGTA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28150043 186 - 42263495 TTAGGAAAAGAAAAAAACATATTCCCATTTCCAACTTAATCTAATCAGAAAATTGGAGGG-----AGCCTTCA---------ATATAT-------TATGTAAT---TCTAGAAA-TCATAGAATACAA------GTAAAAAATTTCAGCTAACTTCATAGAGAAGCAAGTGGAAATAATTT-TAGGAATAAAATTTATAAAAGAA-----GAGATCTCTAGTA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41935204 205 + 62548349 CTAGGACCTGAAAAATCTGTATTGTAATTTCCAAATTAGTCTAATCAGAAATTAGTATAGTTTTTAGCCTacacacacacacacacacacacacacagacaAT---TCTGGTTA-TCACCGAATATAA------ATAGGGGATATCAGTTAAATTCATAGA---ATTAATAGAAATTGTTCCCAAGACTAAAATTTATAGAAAAG-----CCGATCACTGGTA i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42397359 939 + 202140232 I a score=904592.000000 s hg19.chr4_gl000194_random 163801 378 + 191469 TTAAGGATAAGACCCTCAAAGGTGACACAAAATGGGTAATTGTGGGA----TTATTTTAGG--AG-GAATCATCATATATTCTTACTGCTATAAATACAG--TCAAATGTCAGATAAATAT--ACTCCACTGAAATGTTTTCTAGGAATGATGTTGGAACCAATGTTGATAATTTTGAAAG----TCATGGAGAGGATTTCAGATGATA-------GAAGTCG-G-GCAATTATCCCAGGtttaataaataagcaaatggtgagttc-caa----------------------agctgctgtatcagtgagc----------ctcatattgatcctgagcacaatt-tccgaaaggtcc--attaaatgg--------gtctttggagagcactt--aggataagaggctggcagcagagattcactaagaacaa-tggtgccaa-gctT s panTro2.chr4_random 3564343 378 + 6711082 TTAAGGGTAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGA----TTATTTTGGG--AG-GAATCATCATAGATTCTTACTGCTATAAATACAG--TCAAATGTCAGATAAATAT--ACTCCACTGAAATGTTTTCTAGGAATGACGTTGgaaccaatgttggtaattttgaaag----tcattgagaggatttcagatgata-------gaagtcg-g-gcaactatcccaggtttaataaataagcaaatggtgagttc-caa----------------------aaatgctgtatcaatgagc----------ctcatattgatcctgagtacaatt-tcaggaaggtcc--attaaatgg--------gtctttggagagcactt--aggataaaaggctggcagcagggattcactaagagcaa-tggtgccaa-tctt i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 287378 379 + 189746636 TTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGA----TTATTTTGGG--AG-GAATCATCATAGATTCTTACTGCTGTAAATAAGG--TCAAATGTCAGATAAATAT--ACTCCACTGAAATGTTTTCTAGGAATGATGTTGgaaccaatgttggtaattttgaaag----tcatggagaggatttcagatgtta-------gaagtcg-g-gcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagc----------cttgtattgatcctgagcacgatt-tcaggaaggtcc--attaagtgg--------gtctttggagagcactt--aggataaaaggctggcagcagggattcactaagagcaa-tagtgccaaggttt i rheMac2.chr2 C 0 C 0 s rn4.chr11 73451352 376 - 87759784 TTAAGAATAAAACCCTGAAAAGTGACTCCAGATATATAATTTCAATT----TAAATGTGGA--GGGAAATAGTGGTAGCTCTTAATTGC-ATAAATAAGG--ACATGTGTCAGATTCACGG--ATTTCAGTGGAAAGTCTTCTAGGAATGACACAGGAAAG-ATGTTTGTGATTTTGAG------TTACAGAGAGAGCTGGAAATGTCACAGTCCTGAATTTG-G-GTGACCATCCCAGGTTTAATTAAGCAGCAAATGGCATATCCCCAA----------------------AAATGCACCGAGAGTGAGT----------TTTATATTGATCTTG-CCATAATG-TTGGGAAGGCCT--ATTAATTGG--------GTGTCTCAGGAGCACTT--AGGATAAGAAA-TGGAAGCAGATGTGCGT--GAAGCTA----TGCCAA-CCTT i rn4.chr11 C 0 C 0 s mm9.chr16 22813434 381 - 98319150 TTAAGAATAAAACCCTCAAAGTTGACTTCAGATATATAATTTCAATT----TAAGTGTGGA--GGGAAATAGTGGTAGCTCTTAAGTGT-ACAAATAAGT--GCATGTGACAAATTAATGT--AGTCCAGTGGAAAGTCTTCTAGGAATGTCGCAGGAAGA-ATGCTTGTGATTTTGAGAATGACACACAGAGAGAGCTAGGAATGGCAAAATCCTGAAGCTG-G-TTGACCATCCCAGGTTTAATTCAGCAGCAAATGGCATATCCTCCA----------------------AAATGCACTGACAGTGAGT----------TTTATATTCATCCTGAACATAACG-TTAGGAAGGCCT--ATTAAAT-G--------GTGTCTCAAGAGCACTT--AGCATAAGAAA-TGGAAGCAGATACGCA---GAGGCTA----TGCCAA-CCTT i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8627336 377 + 24440124 TTAAGAATAAAACTATAAAATTTGACTTAAAATTTGTAATTATGAGT----CTGTTTTGTG--GGGGGAGAATGGCGGATTAGTATAGCTATGAATAAGATCATATATGACAAA-AAACAA--ACTCCATTGAAAAGTCTTCTAAGAATGCCATTGAAATG-ACTTTGGTGATTTTGAG------AAACAGAAAGAGTTGGAGATGACAGAACCCTGAAATTA-G-GCAGATATCCAAGGtttaataaaggat---atgctggattc-caa----------------------aaatgctgtatcaatggac----------cttatattgatcctgagcacaatt-tcaggaaggtcc--attaaatga--------gtgttttcagagcactt--a----aagaggctggaagcagaaatttactaAAAGCTA-TCTTGCCAA-GCAT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22004463 377 - 163896628 TTAAG---GAAAACATAAACTATGACCCAAAATAAGTAATTTCGAGT----TTCATTTTGG--AG------ATGGTAGA----AATTGCTGTAAAGGAGT--TCAAGAGTCAAGTAAAAAATCATTCCATTGAAAAACCTTCTAGGCACGGTGTTAGAATACATGTTGCTGGTtttgaaagag--tcgtggagagggtatgagatgccagaaccctgaagttg-g-gcagttatcccagatttaataaagaagcaaatggtgaatcc-cga----------------------aaatgctgtatcaatgaac----------cttacattgatcctggacacgatt-tcaggaaggtcc--attaaatga--------atgtttagagcgcactt--aggctaaaaaactggcagcagagtttgactaagcgcaa-ttgtgccaa-gctt i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22923503 387 + 161106243 TTTAGGAT-AGGTCCTCAATGATGATACAAACTGTGTAATTGTGAAT----TTAGGTTGGG--GAAAGATAGTGTTCTATCTTCCTTGCTATAAAATAAT--TCAAATAGAAGATAAATAC--ATT--ATCAAGACATCTTCTAAGAATCATACTGGAAAAAGTGTTGGCGATTTTGAGAGAC--TCAAGGAGAGGGTTTAGGCTATTAGAACCCTGAAGATATG-TTAAGTATCCCAGGtttaatgaagaagcaaatggtgaattc-caa----------------------aaatgctctatcagtaaac----------ttcatattgattgtgagtgcaatt-tcaggaaggtcc--attaaatag--------gtgttttgcgagcactt--atgataaaaagctagcagcagagattcactaagagtgagtcacgccaa-gctt i bosTau4.chr1 I 322 C 0 s equCab2.chr26 28502387 383 - 41866177 TTAAGGGCAAAGCCCTCAAAGACGATCCAAAAT-TGTAATTGAGAGT----TTAGGTTGGG--GGGAGATAGTGTTAGATTCTCATTGCTATAAAAGAGT--TCAAGTGTCAGATAAACAC--A----ATCAACAAGTGTTCTAGGAATGGTGTTGGAATCAATCTTGGTGATtttgagagaa--tcatgaagagggattgagatgctagaaccttgaaggtg-g-gtaaccaccccaggtttaataaagaagcaaatggtgaatcc-caa----------------------aaatgctgtatcactgagc----------ttcatattgatcctgagcccagtt-tcaggaaggtcc--attaaatgg--------gtgttctgagagaactt--agg-taaaaagctggtggcagagatttaccaagggtgagtagtgccaa-gctC i equCab2.chr26 C 0 C 0 s canFam2.chr31 28150229 418 - 42263495 TTAAGGATAAGGACCTTAAAAGTGATCTAAAATGTGTAATTGTGAGT----TTTAGTTGCA--GGGAGATAGCATTAGATTCTTATtgctataaa--agt--tcaggtctcagataaatat--actggatcaaaaagtcttctagaaatgatagtgaaaacaatgttggtgattttgagagag--ccatggagaggggttgagatgttagaacccagaagaaa-g-gtaactattcgagcttgaaaaaagaagcaaatggtgaattc-CAAATGTCAATTGAAGTTATCAGCTAAAGGCTCAACCACTGAGCCACTCAGGCATCCCTATTTATGTATTTCCCAACCAACATAAATGTCTAGATCACAAGGCAACCATCCTTTCCTCAGGAATCCTCCCTG-GGAGAAGCTGTAGGCAGAGG-----CAAAGGGCAATGGTA--------- i canFam2.chr31 C 0 I 368 s ponAbe2.chr3 42398298 351 + 202140232 ---------------------------CAAAATGGGTAATTGTGAGA----TTATTTTGGG--AG-GAATCATCATAGATTCTTACTGTTATAAACACAG--TCAAATGTCAGATAAATAT--ACTCCACTGAAATGTTTTCTAGGAATGATGTTGGAACCAATGTTGGTAATTTTGAAAG----TCATGGAGAGGATTTCAGATGATA-------GAAGTCT-G-GCAACTATCCCAGGtttaataaataagcaaatggtgagttc-caa----------------------aaatgctgtatcaatgagc----------cttatattgatcctgagcacaatt-tcaggaaggtcc--attaaatgg--------gtcttttgagagcactt--aggataaaaggctggcagcagggattcactaagagcat-tggtgccaa-gctT i ponAbe2.chr3 I 939 C 0 s loxAfr3.scaffold_13 41935409 387 + 62548349 TTAAAAATAAGG--CTTCAAAGTGACCTAAAATGTGTTATTGTGAGAGAGCTTAGGTTGAGGTGGGGGATAATGGGAGATTCTCAGTGCTATAAATGAGC--ACAAGGATCAGATACGAAT--GTT------GGAAATCTTCGAGG-ATGTTGCTGGAACAAATGTTGGTGATTTTGGAAGAG--TCATGGAGAGGGACAGTGTTGACAGAACCCTGAACATA-ATGCAGCTCTCCCAGGtttaataaagaaggaaacggtgaattc-caa----------------------aaatgctctatcaatgagc----------ctcatattgattccggtcaccatt-taaggaagggcc--attaaatga--------gtgttttgagagcactt--aggataaaagactggcagcagagattcactgagagtgagtcatgccaa-actT i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=239842.000000 s hg19.chr4_gl000194_random 164179 191 + 191469 GCCTCTTTGACATTGTTATCTG----ACTGATAAAGGTA------GGCTAT-AGCGGT-ACACAATACAGATATTTCCAGGGTAAAGCTG--TTG-AGC-------------TGCTGT-----------AATT-TTCCTTGCCTCTTCAC-TATCTTCTCCTATAGTTGACTCCCAAGGAAAAGATAGTTGAC--TTTTAATCT---AGAAATGTATGTTAATTGG----CAAAA-ACAAAC s panTro2.chr4_random 3564721 191 + 6711082 gcctctttgacattgttatctg----actgataaaggta------ggctat-agCGGT-ACACAATACAGATATTTCCAGGGTAAAGCTG--TTG-AGC-------------TGCTGT-----------AATT-TTCCTTGCCTCTTCAC-TATCTTCTCCGATAGTTGACTCCCAAGGAAAAGATAGTTGAC--TTTTAATCT---AGAAATGTATGTTAATTGG----CAAAA-ACAAAC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42398649 191 + 202140232 GCCTCTTTGACATTGTTATCTG----ACTGATAAAGGTA------GGCTAT-AGCGGT-ATACAATACAGCTCTTTCCAGGGTAAAGCTG--TTG-AGC-------------TGCTGT-----------AATT-TTCCTTGCCTCTTCGC-TATCTTCTCCTATAGTCGACTCCCAAGGAAAAGATAGTTGAC--TTTTAATCT---AGAAATGTATGTTAACTGG----CAAAA-ACAAAC i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 287757 191 + 189746636 gcctctttgacattgttatcgg----actgataaaggta------ggccac-ggcagt-acACGATACGGATATTTCCAGGGTAAAGCTA--TTG-AGC-------------TGCTAT-----------AATT-TTCCTTTCCTCTTCAC-TAGCTTCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGAC--ATTTAATCT---AGAAATGTATGTTAATTGG----CAAAA-ACAAGC i rheMac2.chr2 C 0 C 0 s rn4.chr11 73451728 206 - 87759784 ACCTCCTTGACACTGACATCCGCTCATTAGAGAAATGCA------GGATTC-AGAGAT-CAGCATCATAGACATTTCCAGATAAATGTTA--TTG-GGGAATTTCAGGTCAATGTTATTTGAGAGCTGCAGAT-TTCCTGGCTTCTTCCA-CAGTCTCTCTTTCATCAGAG----------AAATTGTCTGAC--CTTTAATTT-----GGGTTTATGTT-GTTAG----CAAAA-CCAAAC i rn4.chr11 C 0 C 0 s mm9.chr16 22813815 212 - 98319150 ACCTCATTGACACTGACATCTGCTCATTAGAGAAATGCA------GGATTAGAGAAATGCAGCCTGAGAGACATTTTCACGTAAATATTA--TTG-GGGAATTTCAGGTAAATGTTATTGGAGAGCTACAGAT-TTCCTGGCTTCTTCCA-CAATCTCTCTTTCCTCAGAG-----AGAGAAAAAAATCTGGC--CTTAATTCC-----AGATTTA-ATT-GTTAG----CAAAA-CCAAAC i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8627713 168 + 24440124 ACTACCTTGATGTTGGTAT-------TTTGATAAAGGTA------GACTTCAGGCGGT--------ATAGATATTTTCAGGCTGAAGTCA--TTA-CTG-------------TGCAGTTTG-------------TTCCTTGTCCCTACAC-TAGCTTACCCTTTAACCAAG----------AA------TGGC--CTAGATTGCTTGAGAGATTTATGTT-TTTTG----CAAAAGCTAAAt i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22004840 191 - 163896628 acctcttttacattgatagCTG----TTGGAGAAACGAACGCCTTAGGTTCAGGCAAT--------ATAGATATTTCTAGGCTAAAGCTA--TTT-TGG---------GGAATACAAT----------------TTTCTTTCCTGTGCCC-AAACTTCCCCTAAAACTGATTCCTGGGGAAAGAATGGTTGAC--CTTTGATCA---AGAAATATATGTTGGTTGG----CAAAA-ATGAAC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22923890 195 + 161106243 acctcattttcATCACTACCTGACTGATAGAAAAAGGTA------GACTTT-AGATAT-TGACAGCCTGAATATTTTCAGAGTAAAGTTAAGTTAGATA-------------GGCTGC-----------AATTGCCTTCTGCCCCTGTCCATAGCTTCT-CTAGAGCTGATTTCTGAGGAAAGAATAGTTGACTTTTTTGATCT---AGAAATCTATGTTGGTAGG----CAAAT------- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28502770 200 - 41866177 ACCTCTATGACATTTTTACTTGACTGTTAGATAAACATA------GGC-TT-AGACAT-AGACAATCTGGATGTTTCCAGGGTAAAGTTA--TTG-TGG-------------GGCTAC-----------GATTGCCCTTCACCTCTGCATGCAACTTCTCCTAGGGCTGATTCTTGAGGAAAGGATGGTTGAT--TTGTGATCT---AGAAATTTGTGTTAGTCGGTTATTAAGT-ATATAA i equCab2.chr26 C 0 I 14 s canFam2.chr31 14112756 195 + 42263495 gtcaCTAAGTGATTCAGACCTGACTGATAGAAAAAAGTA------GGCTTT-AGACAT-AGACAATCTGGATATTTCCAGAGTAGAGTTA--CTATTGG-------------AGCTAC-----------CATTGCCCTTTGCCTCTGCCTACAGCTTCTCCCAGGGAGGATTCCTGAGGAAAGGATGGTTGCC--TTGTGATCT---AGACATTTATGTTGGTTGG----GAAAT-ACA--- i canFam2.chr31 n 368 n 368 s loxAfr3.scaffold_13 41935796 178 + 62548349 ACCTCTTCGACATTGTTAATCG----ACTGATAAAGGTG------TGCTTC-AGGCAC-AGACATCGGAAAT-TTTCCAGGCTAAAATTA--TTG-TGA-------------GGCCAC-----------AATCACCCTTTGCAtctgctcacagcttctcctagggccgattcccgaggaa--------tgga--ctatgatcc---aggcatttatattggttag----caaaa------- i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=251653.000000 s hg19.chr4_gl000194_random 164370 173 + 191469 AAATGAAACCATAAAATATCCTTTAGGcttctctctgc----tcagtt----a----ttagatca-tatgaatgtgccctt----aggaaacacagaag---------gcccacactattatagagaca-------aatttcttacattttctgctgtttaatgctct-tcaaaagACTTACC---ATACTTCACTAATTTGATTACCAA s panTro2.chr4_random 3564912 173 + 6711082 AAATGAAACCATAAACTATCCTTTAGGcttgtctctgc----tcagtt----a----ttagatca-tatgaatgtgccctt----aggaaacacagaag---------gcccacactattatagagaca-------aatttcttacattctctgctgtttaatgctct-tcaaaagACTTACC---ATACTTCGCTAATTTGATTACCAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42398840 173 + 202140232 AAATGAAACCATAAACTATCCTTTAGgcttctttctgc----ccagtt----a----ttagatca-tatgaatgtgtcctt----aggaaacacagaag---------gcccacactattatagacaca-------aatttcttacattctctgctgtttaatgctct-tcaaaagACTTACC---ATACTTCAGCAATTTGATTGCCAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 287948 172 + 189746636 AAATGAAACCATAAACTATCCTTTAGGCTTCTCTATGC----TTAGTT----A----TTAGATCA-TACGAATGTGCCCTT----AGGAAACACGGAAG---------TCCCACACTATTATAGA-ACA-------GATTTCTTACATTCTCTGCTGTTTAATGCTCT-TCAAAAGACTTACG---ATACTTCACTGGTTTGATTACCAA i rheMac2.chr2 C 0 C 0 s rn4.chr11 73451934 144 - 87759784 AGGTA----TTCAAATGGCTCTAGAGGATGCTGTCTCT----TTAGTT----A----CTTGGTCACAACACATACACCCTTAAA-AGGAAATACAGAAG---GATGTTGC-AACAATGTTGGAGGGGAA---ATATAAATTTTGGTATTCTCTGTTGTTCATCATTCT------------------------------------------ i rn4.chr11 C 0 I 1161 s mm9.chr16 22814027 170 - 98319150 AAATA----TATAAATGACCCTTGAGGCTGCTGTCTCC----TTGGTT----A----CTAGGTCATAACAAAGATGCCCTTAAG-AGGAAATATAGAAG---GATGCTGG-GACAATGTTGGAGGGAAATCTTTACAAAATCTGGTATTCTTTCTTATTTATCATTCT-ATAGTGGAATGGTT--------TTCTGATTT---------- i mm9.chr16 C 0 I 1182 s cavPor3.scaffold_34 8627881 140 + 24440124 ---------cataagtgatcctctaggctgctctctgc----tcagtt----t----ttaaatta-aatgaatatgaccttaac-aggaaattcagcagcgctacactgcaaacactgttaaaaaGATG-------AATTTCTTATATTCTCTGTTTTTAATGGTCTT----CA------------------------------------ i cavPor3.scaffold_34 C 0 I 35 s oryCun2.chr14 22005031 183 - 163896628 AAAAT----CATGACTGACTCCATGGGCTGCT-TCTGC----TCAGTTTGTAA----TTAGATCATATC---TGTGCCCTTGTC-AGGTAACGCAGAAG--TCACACTGCACATACCATTACAGAGACA-------AATTTCTTACCTTCTCTGCTGTTTAATGCTCT-CCAACAGACTTATTACGGTACCTCGTCAATTAGATTGCCAA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22924085 173 + 161106243 AAATACAATAATAAA-----CTTGAAGCTGTTCTATGC----T--GTT----A-----TAGATCA-TATAAATGTGCC-TTAAC-AGGAA--GCAAAAAGTTCAGATGGCAGACAA----ACAGAGAAG-------ATTTTCTTACATTCTCTTCTGATTACTGTTTG-TCAAGAGATCTGTTATTTTGCTTCAGCAATCAGACTGCCAA i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28151015 192 - 42263495 AAATAAAACCATACACTA-CCTTTAGActgccatatgcgtagttaatt----aattattagatca-tacg-atgtgcctctaacaaggag-cacagaaagcccatactgcagacactattaaagaGATG-------ACTTTCTTCCTTTCTCCTTTGTTTAATGTCCT-TCAGAAGATCTGTTATC--ATCTCAGTAATTTGACTGCCAA i canFam2.chr31 I 368 C 0 s equCab2.chr26 28502984 182 - 41866177 AAATAAAATCATAAACTATCCTTTAGGCTGCTCTATGC----TCAGTT----AACTGTTGGATCC-TATGAATGTGCCCTTAGT-AGGAA-CACAGAGA---------GCAGACACTATTATAGAGATA-------ACTTTCTTACATTGTTTTCTGTTTAATGTTCT-TGAAAAGACCTATTGTCTTACTTCAACAATCAGACTGCCAA i equCab2.chr26 I 14 C 0 s loxAfr3.scaffold_13 41935974 187 + 62548349 aaatt--atcataaatgatcctttaggctgctctctgc----tcagtttgtta----ttagatca-tatgaatgtgcccttaat-aggaagagcagaagactcatgctgcaaactttattatagagtct-------a--ctcttacattctgtgatatttattactctttcaaaagACCTACA-TCTTATTTCA-TGATGAGGCTGTAAA i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=397403.000000 s hg19.chr4_gl000194_random 164543 276 + 191469 CTACTTGAACACAGGGACC--------------AATGTGTTTATTAAA-AATTTTGCATATTATGAGGGCATTAAC-TTTTAATTATTCAAT-------TG-------TTAAGACAATGCATATTATTATAAACCATAGAAGGCACA--------------------------------CTTAttacctccttaagaaccagt-c-tctatttctctggtt--catagatct----------ccaaggttatag---------------------aggg---attggac--------at-ttgtgt-cttca----attggc----------cctctt------------cagccctaggata--aatagtgattaatc---taag---ccaatggttttcggctctgtctgacccaatg s panTro2.chr4_random 3565085 276 + 6711082 CTACTTGAACACAGGGACC--------------AATGTGCTTATTAAA-AATTTTGCATATTATGAGGGCATTAAC-TTTTAAGTATTTGAT-------TG-------TTAAGACAATGCATATTATTATAAACCAtagaaggcaca--------------------------------cttattacctccttgagaaccagt-c-tctatttctctggtt--catagaact----------ccaaggtcatag---------------------aggg---attggac--------at-ttgtgt-cttca----attggc----------cctctt------------cagccctaggata--aatagtgattaatc---taag---ccgatggtttttggctctgtctgacccaatg i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42399013 276 + 202140232 CTACTTGAACACAGGGACC--------------AAAGTACTTATTAAA-AATTTTGCACATTATGAGGGCATTAAC-TTTTAAGTATTCAGT-------TG-------TTAAGACAATGCATATTATTATAAACCATAGAAGGCACA--------------------------------CTTAttacctccttaagaaccagt-c-tctatttctctggtt--catagaact----------cccaggtcctag---------------------aggg---attggac--------at-ttgtgt-cttca----attggc----------cctctt------------cagccctaggata--aatagtgattaatc---taag---ccaacggttttcagctctgtctgacccagtg i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 288120 276 + 189746636 CTACTTGAACACAGGGACC--------------AAAGTACTCATTAAA-AATTGTGCATATCATGAGGGCATTAAT-GTTTGAGTATTCGAT-------TG-------TTAAGACAATGAATATTATTATGAACtatggaaggcaca--------------------------------cttattacctccttaagaaccagtcc-tctatttctctggtt--catagaact----------cccagttcat-g---------------------aggg---attagac--------at-ctgtgt-gttca----attggc----------cctctt------------caaccctaggata--aagaataattaatc---taag---ccagtggttttcagctctgtctgacccaatg i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8628056 241 + 24440124 -------------ATTCTTG-------------AAATTAGGGATTATA-TTTTGTTTCATTATAGGGAGCATTAAC-ATTCAATTGT------------TG-------ATAAGTTAGCACATATTCTAACCAACCATAGAAGACATA--------------------------------GTTGTCACCTCCC----GGCCAAT-C-TCTATTTCTCTGGTT--AATCAATCT----------CTCGGTATATAC---------------------TGAT---AATAGAA--------AT-CTGTGTGCTTCA----GTGG--------------------------------ACCCCAGGAAG--AATGGTGATTAGTCAAATAAG---C----AGCTTTCA----TATTGGATCAAATG i cavPor3.scaffold_34 I 35 C 0 s oryCun2.chr14 22005214 271 - 163896628 -----------CTGGTCTC--------------AAAGTACCTATCAAA-TGTCTTACAAATTATGAGAGCATTAAC-ttttaattattttattattaaGTA-------ATAAGACCATGCACATTGTTACAAGTCAtagaagacaca---------------------------------ttgctgcctactcaagagtcatt-c-tctatttcaatagct--aatagaact----------ctcatt-catac---------------------aggt---gttagac--------tt-ttgtgttcctca----atgggc----------cctcct------------cagccctaggatg--aacggtgattaatc---taag---cctatggtttttagctctatctgatgcagtg i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22924258 377 + 161106243 TTACTTCAAAACACAGACTATATTTTTTGTTTCAAAGTACTTATTAAA-TGTCTTTCATGTTAT-GAGGCTCTAAC-TTTTAATTATTTGGT-------TA--------TTAGACA-TGCAT-AGGTGATAAGTCATAGAGGATGAAAGTGAAAgtattagctgtcagtcttctctgactctgtgatcc---catggactgtc-catggaattctccagat--aagaatactgatgtggatagtcattcccttctccaggggatcttcctgacctaggg---attgaac-----------ctggatctcccatagtgcaggcagattcattaccgtctgagctaccagggaagcccAAGAATACCGGCTGTGCTTTGCt---taattgctcagtcatgtctgactctttgtgaccccatg i bosTau4.chr1 C 0 I 166 s canFam2.chr31 28151207 296 - 42263495 TTACTTGAAAACAGGGACTATATTTTTTGTCTCAAGGTACTTGTCAAG-TGTTTTTCACATTATGGGGGCTGTAGCTTTTTAATTATTCAAT-------TGTTAATTAATAAGACAATGCATAATGTTATAAATCAtagaagacaca--------------------------------cttgttactta--catgagacatt-c-tcaatttttcaggct--aatgaaact----------ctcatttcatac---------------------agga---attggac--------a--ctgtatgcttca----ataggc----------cctcct------------cagccctagaatg--aatagtgataaatc---taag---ccaatggttttcagctctatatgacctaaag i canFam2.chr31 C 0 C 0 s equCab2.chr26 28503166 295 - 41866177 CTACATGAAAACAGGGACCATATTTGTTCTCTCAAAGTGCTTCTCAAA-TGTCTTTTACATTATGGGGGCCTTAAC-TTTTAATGATTCTAT-------TG-TAATTAATAAGACAGGGCATCATGTTATAAACCATAGAAGAAGCA--------------------------------CTTgttacct---taagagtcatt-c-tctatttctctggtc--aataggact----------cccatttcatac---------------------agga---actggac--------accctgcgtgcttca----gtgggc----------cttcct------------cagccctagaatg--aatggtgataaatc---taag---ccaattgttctcagctctgtctgacccaata i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41936161 303 + 62548349 CTACTGGAAAACAAGGACCGTATTTTCTGTCTCAAAGTACTTGCCAAATTGTTTGGCACGTTATAGAGGCTTTAAC-TTTTAGTTATT-AAT-------TA-------ATAAGATAGTGCATAGTGTTACAAACCCCAGAAGGTACA--------------------------------TTTGtgacttccctaa-aaccatt-c-cctattttcctggttcaaatagaatt----------cttatttcatac---------------------agggcccattggaaccattgggac-ctgtgtgcttca----atggcc----------cctctt------------caatcctaggatg--aatgttgattaatc---taag---tcaaGggctctcaactccatcaaatccaatg i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=151794.000000 s hg19.chr4_gl000194_random 164819 91 + 191469 cctctacttcataagaaattcttcaaagaccccttcgctattctaaattattagtg-agaacacaatgtatgcattcaagttgttgaaaata- s panTro2.chr4_random 3565361 91 + 6711082 cctctacttcataagaaattcttcaaagaccccttcactattctaaactattagtg-agaacacaatgtatgtattcaagttgttgaaaata- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42399289 91 + 202140232 cctctacttcataagaaattcttcaaagaccccttcactattctaaactattagtg-agaacacaatgtatgcattcaagttgttgaaaata- i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 288396 91 + 189746636 cctctacttcataagaaattcttcaaagaccccttcgctattctaaactattagtg-agaacacaatgtatacatttgcgttgttgaaaata- i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8628297 83 + 24440124 CTTCTA-TTTAGAACAAATTCATGAATGGACCTTTCACTATTCTAAAATGCTAGTG-A------AACATATGTGTTCAATTTATTAGAAAT-- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22005485 90 - 163896628 cctctactttgtaacaaattattgaatgccccttattctattctaaaatgttaata-aaaatataaTGTATGCATTCAAATCATTAAAAAT-- i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28503461 89 - 41866177 cct-tcactcagaacaaattcttgagtggccccttcactactcaaagatgttagtg-aaaacataacatatatattgaagccattaaaaaa-- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28151503 91 - 42263495 cctctaaatcataacacattcttgaatggtcacttcactatactgaaatgttagtgaaaaacataatgtatgtttttgagtccttaagaaa-- i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41936464 91 + 62548349 cctctactttataacaaatttttggacggcccatccactaatctaaaatgctagtg-ataatacaacctatgtattcacatcattaaaatt-t i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22924635 166 + 161106243 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=82588.000000 s hg19.chr4_gl000194_random 164910 98 + 191469 ttaatgttatgctgaagctaac--aaagg--agaaataatttactgtcaatatataatccaaaatgta-tataattgtgccagaacatttacatatcaa-atac s panTro2.chr4_random 3565452 98 + 6711082 ttaatgttatgctgaagctaac--aaagg--agaaataatttactgtcaatatatgatccaaaatgta-tataattgtgccagaacatttacatatcaa-atac i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42399380 98 + 202140232 ttaatgttatgctgcagctaac--aaagg--agaaataatttactgtcaatatataatccaaaatgta-tataattgtgccagaacatttacatataaa-atac i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 288487 97 + 189746636 ttaatgttatactgcagctaac--aaagg--agaaataatttaccgtcaatatagaatccaaagtgtg-tataattgtgccagaaca-ttatatatcaa-atac i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8628380 88 + 24440124 -CAACATAATGTCACA-TTATA--AAAAA--AAACA---CTCAAGCTCAATTTGTTATC--AAAGGTTATATATTTATATCAAAGCATTTGCATGTTTA----- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22005575 98 - 163896628 --AACACTTTGCAAGA-TTAAC--ACAAATGAGACATAGCTCAAAATCAATTGATCATCTGAAATGCT-TATAGTTATGCAAGAACATTTATATATTTAAATAC i oryCun2.chr14 C 0 I 387 s bosTau4.chr1 22924801 85 + 161106243 TTAAGGATATACTT---GTTACTTTCATA--AGAGACATTCTCTATTC---CTCTGGTTAATAGAATT-CCTATTTTGTATAAG----------ATTTGGACAC i bosTau4.chr1 I 166 C 0 s canFam2.chr31 28151594 96 - 42263495 taaat---atgccacaagttatgtaaagg--agaaatgatttgaaatcaatttatagtaaatactg---tataattgtgccaaagtatttacatatttaagtac i canFam2.chr31 C 0 C 0 s equCab2.chr26 28503550 101 - 41866177 ttaatataatgctgtaactaatataaaga--agaaataatttgaaatcaaattataataaaaaatgtt-tgtagttgttccaaagcatttacatatttaagtac i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41936555 93 + 62548349 --aacataatgtcccaaatgatataaatg--agaaataatttgagctcaatttatgataaaa-------tgtagttgtatgtgagcatttacatgtattaatgc i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=488378.000000 s hg19.chr4_gl000194_random 165008 367 + 191469 aatagaacataat-gaaattttcatatcttcgcccataccttgaaacattgtaaataaaaagttacaaatat-------------agtttcattgaataac-caaatgccaaaactgccatttctattgttgacatgattGAACTGCATTGGTAAATGTAATAGATACTTTCTGTTTGGCCCTTGTCCCCTGTTATACT---CCCCTATTTAC-TGGCTTTTGTCCAAGTGGAATGG---------TCCATATTGAATATCT---CCATCGG--TTCCCTTGCTCATTGCCTTCTATGCATGTTCATGAGATTAAAGGGAAGGAGGAAATGG-GATTGGGGGTTA-----------------TTGCCTAAACTCCCTCTCTGCTAGGTCTCCTGGACCAATCTTTTTC----ATAAGAAAAT s panTro2.chr4_random 3565550 359 + 6711082 aatagaacataat-gagattttcatatcttcgcccataccttgaaacattgtaaataaaaagctacaaatat-------------agtttcattgaataac-caaatgccaaaactgccatttctgtttttgacatgattgatctgcattggtaaaTGTAATAGATACTTTCTGTTTGGCCCTTGTCCCCTGTTATACT---CTCCTATTTAC-TGGCTTTTGTCCAAGTGGAATGG---------TCCATATTGAATATCT---CAATCTG--TTCCCTTGCTCATTGCCTTCTATGCATGTTCATGAGATTAAAGGGAAGGAGGAAATGG-GATTGGGGGTTA-----------------TTGCCTAAACTCCCTCTCTGCTAGGTCTCCTTGACCAATCTTTTTC----AT-------- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42399478 359 + 202140232 aatagaacatgat-gaaattttcatatcttcacccataccttgaaacattgtaaatataaagctacaaatat-------------agtttcattgaatagc-caaatgccaaaactgccatttctattgttgacatgattGATCTGCACTGGCAAATGTAATAGATACTTCCTGCTTGCCCCTTGTCCCCTGTTACACT---CCCCTATTTAC-TGGCTTTTGTCCAAGTGGAATGG---------TCCATATTGAATATGT---CAATAGG--TTCCCTTGCTCATTGCCTTCTATGCATGTTCATGAGATTAAAGGGAAGGAGGAAATGG-GATTGAGGGTTA-----------------TTGCCTGAACTCCCTCTCTGCTAGGCCTCCTTGACCAATCTTTTTC----AT-------- i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 288584 358 + 189746636 agtggaacatgat-gaaattttcatatctgcgcccataccttgaaacattgtaaataaacggctacaaatac-------------agTTTCATTGAAAAAC-TAAATGCCAAATCTGCCATTTCTATTGTTGACATGATTGATTTGCACTGGTCAATGCGATGGATACTTTCTGTTCGCCCCTTGTCCCCAGTTATACT---ACCCTATTTAC-TGGC-TTTGTCCGAGTGGGGTGG---------TCCATATTGAATATCT---CAATAGC--TTCCCTTGCTCATTGCCTTCTATGCGTGTTCATGAGATTAAAGGGAAGGAGGAAAGGG-GACTGGGGATTA-----------------TTGCCTAAACTCCCACTCTGCTAGGTCTCCTTGACCTCTCTTTTTC----AT-------- i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8628468 374 + 24440124 --------ATAAT-GA-ATATTTTATGGCTGAATTCTATTTTGCATGATTACAGACACAAAGCTACAAATACTATCATGTGTTTCTGTTTCATTTCCTAAC-CAAATACCAAAACTGCCATTCCCATTGTTGATATGACTGACATGAAGTGGAAAATGTCACAAATATCCTCA-------CTTCTTTCCCTGTTATACT---TTTCTCTTTAC-CTGAGTTTGTTTGGATTGAAtgaactgtgtgaactgtgtgaactgtgtgaacAGGATAGGCTGTCCTGTTCTTTGGTTTCTGGGTGTATTTAAG--GTTCAAGAGAAGGTAGAAATGA-GA-TATGGTGTAG----------------TGTTACAGGATCCATTCTTACTGAATGGTCTTGATGTGTTTCTC------ATAAGAAAAT i cavPor3.scaffold_34 C 0 I 1521 s oryCun2.chr14 22006060 385 - 163896628 AATAGAATATAAA-AA-ATGTTCTTATCTATAACTATTTCTTGGATAATTATGAATACAAAGTTACCAATATGGTGAAGCGTATGAGGTTCAATGGATGAT-CAAATATCTAAAATATCATTCTCA-TATTGATGTGGTTGATCTGAATTGGCAAATGTGATGCATATCTTCT-------GCTTTATCCTTGTCTCATTGTATGctactctgt-ctgattttgtccaaggagaatga-----gtgacctgtattggatatat---caagaca--ctccttcactcttaggcttctgggtgtattcaagaaattagacggaagagggaaatga-aactgtgggggagatggaactaggaattattccaaaggctccctccctAATAGGGTTTCTTGACTTCTCTCTGTC-------------- i oryCun2.chr14 I 387 I 6 s bosTau4.chr1 22924886 365 + 161106243 CATGTGCTTCAATGGGCAGTCTTCGGCCTATACCCATATCTGGAATCCCTGTGAATGCAA----TACAATATAGTGATGCATCTAAGTTTCACTGGAGAACTCAAAAACCGAAATTTCCATCTGTATTTTTGACATGACTGATCTGGACTGGTACCTGTG--AGATATTCTATGTGC-TCC-TTATTCTGAGTTGTACT---TCACACTCTACTCCATTTCCATCCAAGTAGAATGA---------CCTGTATTGAATATAT---CAGTGAG--CTCCCTTGCTCTTTGACTTTTATATGTGTTCAAGACATCAGTGAGAAGGAAGAGAGAATGGTCAGGGGTTA------------------TCCACAAGCTCTCTGCCTGCTAGGTCTCCTTGGCCAATCTGTGTC-------------- i bosTau4.chr1 C 0 I 117 s canFam2.chr31 28151690 383 - 42263495 tatggaagataat--acatttttatgtgtgcacttgtatcttatatcattatatatgcaaaaactataatatggtaatgcgtgtgagttttattggacaattcaaatattgatgctgccattctcattgttgacatgattGATCTGGACCGGCAAATGCCGtagatatcttttgttcatcc-ccatcccaagtggtacc---gcacagtttacctcacttttgtccaagtagaatga---------cctatattgaatatat---cagtagc--ctcccttgccctttggcttctgtttatgtttaagagattagagggagggagtagagagtggtcaggggata-----------------tttcccaatctccctccctacttggTCTATTTGGCCAACCTGTGCCTCTCATAAGAAA-- i canFam2.chr31 C 0 C 0 s equCab2.chr26 28503651 371 - 41866177 aatgaaaggcaat-aaaattttcatgtctgcacccagatgttgagtcatcgtaaacgcaaagagacaaatacagtaatgcatatgagtttcactggagaactcaaacactgaaactgccattctcattgttgacatgaCTGATCTGGATTGGAACACAtgatagatatcttctgtccatccttcatccctagttgttct---ccacccgctacgctgcttttgtcca---agaatga---------cctgtactaaatatat---cagtag---ctccctcgctctttcatttctgtttgtgttcaagagattggaaggaagttagaaagagcagtcagggataa-----------------ttccacaggctccctccctacaaggtcTCCTT-GCTAATCT---TCTCTCAT-------- i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41936648 352 + 62548349 catagaacataat-gaagtcgcaaggtatccgcacacatcttaagtcactctgaatgtaaagctacaaatatattgatatgtgtgagtttcgttggatgcctaaaataccCAAACTGCCCTTCCTGTTGTCGAAGCCATTGATCTGAACT----------------------TGTTTGCCTCTTGTCCTGCCTTGTGCT---CCACCTTTTTC-ATGCTTTTGTCCAAGTAGAATCA---------CCCATATTGACTAAAT---CACTATG--CTTTTTGGTTCTTTAGCTTCTCTCTGGGCTCTAGAAACTGGAGAGAAGGAGAAGAAAGAAGTCAGGGGTTG-----------------TTTCACAGGCTTCTCCCCTTTTAGGTTTCTTCAGCCTCTCTGTCTC----AT-------- i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=0.000000 s hg19.chr4_gl000194_random 165375 313 + 191469 TAGTGggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtcccgcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaa e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937000 0 + 62548349 C e cavPor3.scaffold_34 8628842 1521 + 24440124 I e oryCun2.chr14 22006445 6 - 163896628 I e canFam2.chr31 28152073 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504022 0 - 41866177 C e rheMac2.chr2 288942 0 + 189746636 C e panTro2.chr4_random 3565909 0 + 6711082 C e ponAbe2.chr3 42399837 0 + 202140232 C a score=137392.000000 s hg19.chr4_gl000194_random 165688 157 + 191469 aaaaaaaagaaaaTTAGTGTTTCCTTCTGTGATCAGGGCAGTTTAC-TCCCCAGAA-CTCTGCCTGCCACTGCTAAACCAGAGTTATTGTGGGGTGTGATTTCTGTGATTCCTTCAC----------CCTTCTCCCCTGACATTTTCGTAAGTAGTCTCTTTGGAAATA s loxAfr3.scaffold_13 41937000 147 + 62548349 ------AAAAATGTCAGTGTTCCCTTCT---CTCAAGGTAGTTTTT-TCCCCACAA-CTCTCTCTGCTGCTGCTAACCCAGAGTTATGAC----GCTATCCCCAGTGATTGCTCTACAACCACGTGGCCGCCTACCCCT------TTGCCAGTAGTCTCTTTGTAAAT- i loxAfr3.scaffold_13 C 0 I 1 s panTro2.chr4_random 3565909 151 + 6711082 ------AAGAAAATTAGTGTTTCCTTGCGTGATCAGGGCAGTTTAC-TCCCCAGAA-CTCTGCCTGCTGCTACTAACCCAGAGTTATTGTGGGGTGTGATTTCTGTGATTCCTTCAC----------CCTTCTCCCCTGACATTTTCGTAAGTAGTCTCTTTGGAAATA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42399837 151 + 202140232 ------AAGAAAATCAGTGTTTCCTTGTGTGATTAGGGCAGTTTAC-TCCCCAGAA-CTCTGCCTGCTGCTACTAACCCAGAGTTATTGTGGGGTGTGATTTCTGTGATTCCTTCAA----------CCTTCTCCCCTGACATTTTCGTAAGTAGTCTCTTTGGAAATA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 288942 146 + 189746636 ------AAGAAAATCAGTGTTTCCTTATGTGATCAGGGCAGTTTGC-TCCCCAGAA-CT----CTGCTGCTACTAACCCAGAGTTATTGTTGGGTGTGATTTCTGTGGTTCCTTCAC----------CC-TCTTTCCTGACATTTTTGTAAGTAGTCTCTTTGGAAATA i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22006451 115 - 163896628 ---------AAGACAAATGATCCCTTGTGTAACAAATGTAGTTTGT-TCCTTATGA-CTCT-----CTAATGCTAACCCAGAGTTACAAT----TCTAATTCTTGTGATTCCTCCTC----------CCTTCTCTTTTCACACTT------------------------ i oryCun2.chr14 I 6 I 387 s equCab2.chr26 28504022 148 - 41866177 ------AAGAAGGTGGGTGTTCCGTTCTCCTCTCAAGGTGGTTTCTATACCCATGA-TTCTCTCTGTTGTTCCTAACCCAGAATTATGGT----GCTACTTATTGTGGTTCCTCTAT----------TCCCATCCCCCCACACCTTTGTAAGTGATCTCTTTATAATTA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28152073 134 - 42263495 ------------TTCAGTGTTTCTTTCTCCTCTTAAGATGGTTTCT-TCCCAATGATTTTTCTCTGCTGCTACTAACCC-----TAT-GT----GCTACTCACTGTGGTTCCTCCAG----------TCTCATCCCCCT-TACCTTTGTAAGTAGTCT-TTTGTAAATA i canFam2.chr31 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e cavPor3.scaffold_34 8628842 1521 + 24440124 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=41405.000000 s hg19.chr4_gl000194_random 165845 55 + 191469 AACCCAAGTTAAATTATCTTAGTTT---------------GTGTGTGTTCTATTTTTCCTATTGAGACTC s panTro2.chr4_random 3566060 55 + 6711082 AACCCATGTTAAATTATCTTAGTTT---------------GTGTGTGTTCTGTTTTTCCTATTGAGACTC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42399988 55 + 202140232 AACCCATGTTAAATTATCTTAGTTG---------------GGATGTGTTCTCTTTTTCCTATTGAGACTG i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 289088 55 + 189746636 AACCCATGTTAAATTATCTTAGTTT---------------CAGTGTGTTGTCTTTGTCCTATTGAGACTC i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28504170 55 - 41866177 AACCTTTGTTAAGTTATCTTACTTT---------------GAGAATGCTTTTTTCTTTGTTTTTGTACTC i equCab2.chr26 C 0 I 29 s canFam2.chr31 28152207 37 - 42263495 AACC-TTGTTAAATTAT----CTTT---------------GAGGATATTTCAttttt------------- i canFam2.chr31 C 0 I 337 s loxAfr3.scaffold_13 41937148 70 + 62548349 AACCCTTGTTAAATTATCTTAATTTGAGTAAAAAAAAATCGAGTATGCCATTGTTTTTCCTATGGGACTT i loxAfr3.scaffold_13 I 1 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e cavPor3.scaffold_34 8628842 1521 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=319593.000000 s hg19.chr4_gl000194_random 165900 541 + 191469 ------------TGAA---------ATGAGTAtctaaatgaaaaaatctaccatcttttctcatatacatagtagtttcattcttgcaaaattcatggcatattaaaaccatgcgaaagta-------------------cttggcac-ttag--gcagttaca-tttgggattgtataattaaacaaagcaggttattcaccttcattacattagaaagtcattcaggacatacagcaatccttaattaggagcggctatcccatgttactggacatatggcatccctgTTTTCCAATCCTTAAAGTTTTTCCTTAAAGTTCCAAAATGCCGTCACTTATTATTTCCTGCCATTGAATTTTGTCACATGAAGTTGTAAGG-CTGGGAATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGATAATCACAAAGAAGTGGATCATGTTGAATTAACTAAACATTGATACCATCTATTTGTTGTGCGATTTGGT-----CAAAGTTGCTCCTTG-TTTTTTTCTTCAATTAGTTGACTATTCTGTTACTTGAAGCTAAAAACATttt-----------------tttcttttctttctttc------------------tttt s panTro2.chr4_random 3566115 542 + 6711082 ------------TGAA---------ATGAGTAtctaaatgaaaaaatctaccatcttttctcatatacatagtagtttcattcttgcaaaattcatggcatattaaaaccatgcaaaagta-------------------cttggcac-ttag--gcagttaca-tttgggattgtataattaaacaaagcaggttattcaccttcattacattagaaagtcattcaggacatacagcaatccttaattaggaacggctatcccatgttactggacatatggcatccctgTTTTCCAATCCTTAAAGTTTTTCCTTAAAGTTCCAAAATACCGTCACTTATTATTtcctgccattggattttgtcacgtgaagttgtaagg-ctgggaatgccatagccatcttggaaacatAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAATTAACTAAGCATTGATACCATCTATTTGTTGTGCGATTTGGT-----CAAAGTTGCTCCTTG-TTTTTTTCTTCAATTAGTTGACTATTCTGTTACTTGAAGTT-AAAACTTTTt-----------------tttcttttctttccttc----------------tttttt i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42400043 556 + 202140232 ------------TGAA---------ATGAGTAtctaaacgaaaaaatctaccatcttttctaatgtaca---tagtttcattcctgcaaaattcatggaatattaaaaccatgcaaaagta-------------------cttggcac-ttag--gcagttaca-tttgggtttgtataattagacaaggcaggttattcgccttcattatgttagaaagtcattcatgacatgtagcaatccttgattaggagcggctatcccatgttactggacatttggcatccctgTTTTCCAATCCTTAAAGTTCTTCCTTAAAGTTCCAAAATGCCTTCACTTATTCTTTCCTGCCATTGAATTTTGTCACATGAAGTTGTAAGG-CTGGGAATGCCATAGTCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAATTAACTAACCATTGATACCATCTATTTGCTGTGTGATTTGGT-----AAAAGTTGCTCCTAG-TTTTTTTCTACAATTAGTTGACTATTCTGTTACTTGAAGCTAAAACTttttt-----------------tttcttttctttctttcttttcttttttctttttttttt i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 289143 523 + 189746636 ------------TGAA---------ATGAGTATCTATATG-AAAAATCtaccatcttttctcatgtacatagtagtttcattcctggaaaattcatggcatattaaaaccatgcaaaagta-------------------cttggcac-ttag--gcagttaca-tttgggtttgtataattaaacaaaatgggttattcaccttcattacattagaaagtcattcaggacatacagcaatccttgattaggagtggttatcccatgttactggacatttggcagccctgTTTTCCAGTCCTTAAAGTTCTTCCTCAAAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGG-CTGGGAATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTCCAATTTGGT-----AAAAGTTGCTCCTTATTTTTTTTCTACGATTAGTTGACTATTCTGTTGCTTGAAGCTAAAAACTTGtt-----------------tttc----------------------------------- i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41937218 588 + 62548349 TAACAGATACAgtgaatagcctttggcaaatatccaaaggaaataaactaccatctttcttc----acataattgtttcattcctggaaaatgcatcacatattaaaaccacaaaaaaaagaaaaaagaaaaaaaaaaaccttgatatgttaattggagttagagtctggattcagataattaaaaaagacaagtcattcaccttcatgacattatggagtctctcaggctgtgtgataatcctttattagggttgattaggctcatttgctggacgtttagcatccctggtttccatctattaaaATTCTTCCACAAAGTTCTAAAATACTCCCA-----------CTGTCAAGTGGTGTTGTCATGTGAAGTTGTAAGGTTTGGGTCTGCTGTAGCCATTTTGTAAACATAGGT-GAAAGGCAAGAGAAT--CAGACAAGTGAACCACGTTGGACTAAACAACCCTGGAAACGCCTTGCTTGTTGTGTAATTTGATTTAAAAAAAATTACT--TTG-TTTTTCTCTATTGTTTGTTAAGTATACTGTTACTTGAAATCAAAATTGTCTTAAGCAATAACAAAAGACTTCACTTTGTTTCATTC------------------TCTT i loxAfr3.scaffold_13 C 0 I 2558 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e cavPor3.scaffold_34 8628842 1521 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I a score=80068.000000 s hg19.chr4_gl000194_random 166441 168 + 191469 ttatttttgacagaaccttactctgttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcttgcctagttcaagcaattctcacacctcagcctccctagtagctgggattacaggcacatgccaccacactcagataatttttgtattttt s panTro2.chr4_random 3566657 168 + 6711082 ttttttttgacagaatcttactctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacctctgcttgcctagttcaagcaattctcacacctcagcctccctagtagctgagattacaggcacatgccaccacactcagatgatttttgtattttt i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42400599 167 + 202140232 ctttttttgacagagtcttactctgttgcccaggctggagtgcaatggcatgattttggttcactgcaacctctgcttgcttggttcaagcaattctcccacctcagcctcccaagtagctggaattacaggcac-caccaccacactcggataatttttgtattttt i ponAbe2.chr3 C 0 I 6577 s rheMac2.chr2 289666 163 + 189746636 ---tttttgacagagtcttactctgttg--caggctgaagtgaaatggcatgatctcggctcactgcaatctctgcttgcctggttcaagcaatcctcccacctcagcctcccaagtagctgggactacaggcacacgccaccacactaaggtaatttttgtattttt i rheMac2.chr2 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937806 2558 + 62548349 I e cavPor3.scaffold_34 8628842 1521 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I a score=27564.000000 s hg19.chr4_gl000194_random 166609 119 + 191469 agtagagatggggtttcaccctgtttgccaggctggtctcaaactcctgacctcaagtgatctgcccacctcagcctaccaaagtgctgggattacaggtgtaagccactgaccctgcc s rheMac2.chr2 289829 119 + 189746636 agtagagatgaggttttaccatgttttccaggctggtctcaaactcctgacctcaactgatgcagccgccttggcctcccaaagttctgggattacaggcatgagccactgcccctggc i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3566825 119 + 6711082 agtagagatggggtttcaccctgtttgccaggctggtctcaaactcctgacctcaagcgatctgcccacctcagcctaccaaagtgctgggattacaggtgtaagccactgaccctgcc i panTro2.chr4_random C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937806 2558 + 62548349 I e cavPor3.scaffold_34 8628842 1521 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=23544.000000 s hg19.chr4_gl000194_random 166728 59 + 191469 CAAAAACATTTTAACCAATAGCAAAGCACATTATTTCATTATATTTTTTCAAAAGTTGC s panTro2.chr4_random 3566944 59 + 6711082 CAAAAACATTTTAACCAATAGCAAAGCACATTATTTCATTACATTTTTTCAAAAGTTGC i panTro2.chr4_random C 0 I 23694 s rheMac2.chr2 289948 59 + 189746636 cAAAAACATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTGC i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8630363 58 + 24440124 CGAAATCATCATAACCAATGACAAAAGACCTTAATTAATTTCATTTTTT-GAAAGTTGT i cavPor3.scaffold_34 I 1521 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937806 2558 + 62548349 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=15055.000000 s hg19.chr4_gl000194_random 166787 46 + 191469 CAGTAATTTCAATTAAAAATATTATATAACATGTTTAATGCAATAc s panTro2.chr4_random 3590697 46 + 6711082 CAGTAATTTCAATTAAAAATATTATATAACATGTTTAATGCAATAc i panTro2.chr4_random I 23694 C 0 s rheMac2.chr2 290007 46 + 189746636 CAGTAATTTCAATTAAAAATATTATATAACATGCTTAATGCGATAc i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8630421 41 + 24440124 AAATCATTCCTATT-AAAATATTCTAC----TTCCCAATGTAATAC i cavPor3.scaffold_34 C 0 I 31 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937806 2558 + 62548349 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=107084.000000 s hg19.chr4_gl000194_random 166833 477 + 191469 aaatgcttttcaatgtacaatggggttaagtcttgataagctgattataaattgaaaatacagtaagttaaaaatgtattta--atatctaacttactgaatatcacagcttagcctggcatacctttaatgtgctcagaacacttacatcagctgacaattgggcaaaatcgttgaatacaaaacctgctttataataaagtattggatattttatgtaatttgttgaatattgtactgaaagtgaaaagcagaatggttatattctattcaaagctatcacttttgcttcatcataaagtaaaaaaaatcataaattgaagcattatcagttgttgaccatctgtgtatatgtatg----------tgtgtgtgtacctatataaacatgtatgtttatatatatatttgtgtgtgcatatAACCTCGgtgtgtgtgtatgtgtgtttgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgAAAT s panTro2.chr4_random 3590743 467 + 6711082 aaatgcttttcaatgtacaatggggttaagtcttgataagctgattttaaattgaaaatacagtaagttaaaaatgtattta--atacctaacttactgaatatcacagcttagcctggcatacctttaatgtgctcagaacacttacatcagctgacaattgggcaaaatcattgaatacaaaacccactttataataaagtattggatattttatgtaatttgttgaatattgtactgaaagtgaaaagcagaatggttatattctattcaaagctatcatttttgcttcatcaaaaagtaaaaaaaatcataaattgaaccattataagttgttgaccatctgtgtatatgtatg----------tgtgtgtgtacctatataaacatgtatgtttatatatatatttgtgtgcgtatatatCCTCGgtgtgtgtgtatgtgtgtttgaaa----------gagtgtgtgtgtgtgtgtatgAAAT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 290053 456 + 189746636 aaatgcttttcaatgtacaatggggttaagtcttgataaactgatcataaatt-aaaatactgtaagttaaaaatgtatttaatatacctgacatactgaatatca-----tagcctggcatacctttaatgtgctcagaatacttacatcagctgacagttgggcaaaatcattgaatacaaaacccattttataataaagtattgtatattttatgtaatttgttgaatattatactgaaagtgaaaagcagaatagttatattctattgaaagctatcacttttgcttcatcataaagt-aaaaaaatcataaattgaaccattataagttggtgaccatctgTGtatatgtatgtgtgtgtatatgtgtgtgtatctatataaatatgtatgtt--tatatatatttgtgtgcatatatatCCTCTGTGTGTGTG--------------A----------GAGAGAGTGTGTGTGTGTATGAAAT i rheMac2.chr2 C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937806 2558 + 62548349 I e cavPor3.scaffold_34 8630462 31 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=66821.000000 s hg19.chr4_gl000194_random 167310 196 + 191469 TGTAGGGAAGTAAAATTTCTTATCTTATAGATATA---GCA-TGTTAACATGTTGGTACCTATCCTCCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGTTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGG-GTGATT-------------------------ACatata s cavPor3.scaffold_34 8630493 213 + 24440124 TATACAGGAGTAAAATTTCATATTTTCTACATTTAAGCACA-TTTAAATTATTTTGTGCAAATCTTTATAAGATATAAAATTTTGCAT------AAGTGCATACTTTTAGTTTCACACAAAGGTAA------TTTATATGCTTTTTGTTATTTTACTGTTTCACTCAAAATTATCAGGTTTACATGGTGAGATTTATGTACCCACATACATCTATATACACATATA i cavPor3.scaffold_34 I 31 C 0 s rheMac2.chr2 290509 197 + 189746636 TGTAGGAAAGTAAAATTTCTTATCTTGTAGATATA---ACATTGTTAACATGTTGGTGCCTATTCTTCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGGTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGG-ATGATT-------------------------ACATATA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3591210 196 + 6711082 TGTAGGAAAGTAAAATTTCTTATCTTATAGATATA---GCA-TGTTAACATGTTGGTACCTATCCTCCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACTGTTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGTAGTTTCATTCAACACTATCTGGTTTATATGG-ATGATT-------------------------ACATATA i panTro2.chr4_random C 0 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e loxAfr3.scaffold_13 41937806 2558 + 62548349 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=166324.000000 s hg19.chr4_gl000194_random 167506 441 + 191469 taatgctaggattaaggttcttctctataactttgaaacttccttgattatcaacccttggtatattcttagaataggattttattttagaattaagatccttgtttc--aggactctagactgttaacacacagagccaataattattcagaatggt---tgggttagttcacattcccacagaggagacatcaaatgtccaggctgcacagcctcattaacactagattttctggacattttatatagtatttcatctgatataaaaa--gtagaattctaatttgattatggctgttaatttatttttacatttttagtcattatgaaaatgttttACTATATGAAAAGCCAGGAAAGGGTTTT-----------TTTTTTAAGGTAGTACTTCAGAAATATTTATGATACTTAATTTTTAAAAATTAACTCTAAAA-GAATCTTGAAATGTCTGTT s panTro2.chr4_random 3591406 441 + 6711082 TAATGCTAAGATGAAGGTTCTTCTCTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGTATATTCTTAGAATAGGATTTTATTTTAGAATTAAGATCCTTGTTTC--AGGACTCTAGACTGTTAACACACCGAGCCAATAATTATTCAGAATTGT---TGGGTTAGTTCACATTCCCACAGATGAGACATCAAATGTGCAGGCTGCACAGCCTCATTAACACTAGATTTTCTGGACATTTTATATAGTATTTCATCTGATATAAAAA--GTAGAATTCTAATTTAATTATGGTTGTTAATTTATTTTTATCTTTTTAGTCATTATGAAAATGTTTAACTATATGAAAAGCTAGGAAAGAGTTTT----------ATTTTTTAAAGTAGTACTTCAGAAATATTTGCAATACTTAATTTTTAAAAACTAACTCTAAAA--AATCTTGAAATGTCTGTT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 290706 450 + 189746636 TAATGCTAGGATGAAGGTTCTTCCCTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGGATCCTTGTTTC--AGGACTCTAGTCCGTTAACACACAGAGCCAATAATTATTCAGAATGGT---CAGGTTAGTTTACATTCCCACAA--GGGACATGAAATGTCCCGGCTGCACAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCATCTGGTATAAAAA--GTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTTACTTTCTTAGTCATTATGAAAATGTTTAACTACATGAAAAACCAGGAAAGCGTTTTTGTTTTTTTTTTTTTTTTAGGTAGTACTTCAGAAATATTTGTGATACTTAATTTCTAAAAATTCATTCTAGAA-GGCTCTTGAAATGTCTCTT i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8630706 388 + 24440124 TA----TGGGATAAATGCTATTATTTGTACTTCTGAAACTTTCCTGGTTATCAATCCT-------------------GTTCATATTTTGGAAGTAGGACTCTGGTTTCAAAGGACAGTAGGCTATTATTAAGCACCCTCAGTAATTCTTCAGAATTTTGTCTGGGTTG------ATTTCCACAAATGGGACATCAATAGTCTAAGTTGTATAACTTCAACAGCACTAGATTTTATGGGCATGTTTTGAAATATTTAAGCTAGTATGAACA------AAATCAAATTTGT------------ATGTATTTTTGGTATTTTTGTTTTTAAAAAA---------TATACATACAGCT-TCAAAGGGTATT--------------TTAATACTTCTGCTTTAGAAAAGTTTGTGATATTTGATTTTTTAAAAA-AATTATGAAACCATTCCTGAGATATCTCTT i cavPor3.scaffold_34 C 0 C 0 s loxAfr3.scaffold_13 41940364 407 + 62548349 TGATGATAGGATGATTGTCCTTCTCTAGGTGGCTGAAAATT-CTTGGTTACCAACCCTGGGTACATTC------------------TCAGAATTGAGATTCCTGTTTTAATGGAATGTAGTGTGTTAATAAACATA-CCAACACTTCTCTGGAAGGGC---TGGGTTAATTCACATTCCCGCAAATGTGATATCAAATGTCCAGGATGTACAACCTTCCTTACAATGAATTTTGTAAACACTTGATATAATTTACCCCCTGGTAGGATAAAGGTAAAATTCTAATGTAA------------GTCTA---TCAATTTTTTCATCACTATGAAAAC-TTAAACTATATCAAAAGTCAGAAAAGTATACT------TTTAGTTGTTCTAA--AGTATTTCAGAAAAATTTTTGATACTTGATTTATTTTGATTTACTTTAAAA-AAA-----AAAAGTCCCTT i loxAfr3.scaffold_13 I 2558 C 0 e rn4.chr11 73452078 1161 - 87759784 I e mm9.chr16 22814197 1182 - 98319150 I e bosTau4.chr1 22925251 117 + 161106243 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=92843.000000 s hg19.chr4_gl000194_random 167947 224 + 191469 TAATAAAATAGGACATAAATACTGGTCACATT-------AGT-GAAAAATATTTGTTTA-----------------------------AAATTAAAATATCTGCAGC---------AATCCTGTAGATAT---TAATAAGTTT------TTAAAGAATGACATCTTCAAAATATAACTGTTCTAAACT-----------------------------------------------------------------------------------AATATGTCTCCATTAATACATAT-------------AGATACATATATCTAAATAAATTTGAAGAC---TTCAAATTCCAGGTACA--ATATAATTTTTTTCTATCCTT s cavPor3.scaffold_34 8631094 277 + 24440124 TAATGAAACATGACATAAATAATCCTTACAATTTCATGGAAT-ATAATACATGGATTTT-----------------------------CAATTAAAATGTCTTCAGC---------AATATTGTAGACTT---TAGTGA--TTTTAA-GCTAAAAGCTGGCATCTCTAAAATATAAA-GTTGTGAAATTCTAATCAATTAAGGAAT-ATTTTCATCACATA-TTTTAATTTTGTGTAAAAAC-----------------------------AATA--TTTGAATAGCTTTATTA-------------AGATAAATACACCTAAAGGAACATCTAGACAAATTCACATTCTAGATAAAATACGTATTTTT----------- i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73453239 273 - 87759784 TAATGAAATAAGACACAAATAATTGTCATGTT----TAAAGT-AAAATGTATATGTATA-----------------------------AATTTAAACAAACTACCAC---------AGTCTGGTCAACTT---TAATAA--TT------ATAGAAGATGACATCTCCCAAATATAAATATTCTAAATGTATAATTAGTTAGAAGATAACTTGCCCTAAATATTTTTAGCATGAATTAAAAACTT------------------------CCAAATA--TTTTGATGAATTTGTGA-------------AGATAAATGTGTCCACTAG-ACGTGAAGACAGCTTCATCTTCTAGGTACA--ACTTAATTTT----------- i rn4.chr11 I 1161 C 0 s mm9.chr16 22815379 278 - 98319150 TAATGAAATAGGACATAAATAATTGTCACATT----TATAGTAAAAATGTATATTTATT-----------------------------GATTTAAACAAACTACCAA---------AATCTGGTCAACTTAAATAATAA--TT------ATAGAAAATGACCTCTCCCAAATACAAATACTCTAAATGCATAATTAGTTAGAAGTTAACTTGCACTGGATATTTTTAGGATTGATTAAAAACTT------------------------CCAAGTAT-TTTTGACATGTTTATGA-------------AGATAAATATGCCCAATAG-ACATGAAGATAGCTTCATCTTCTAGTTACA--ATCTACTTTT----------- i mm9.chr16 I 1182 C 0 s rheMac2.chr2 291156 232 + 189746636 TAATGAAATAGAACATAAATGCTGATCACGTT-------AGT-GAAAAATACGTGTTTA-----------------------------AAATTAAAATCTCTGCAGC---------AATCCtataaatat---taatattttt------ttaaataatGACATCTTCAAAATATAAATGTTATAAACTTATAATCGGTTA-----------------------------------------------------------------------AATATGCCTCTATTAAAATA----------------GCATACATAGATCTAAATAAATTTGAAGAC---TTCAAATTCCAGGTACA--ATATAATT-TTTTCTATACTG i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3591847 235 + 6711082 TAATGAAATAGGACATAAATACTGGTCACATT-------AGT-GAAAAATATTTGTTTA-----------------------------AAATTAAAATATCTGCAGC---------AATCCTGTAGATAT---TAATAA-TTT------CTAAAGAATGACATCTTTAAAATATAAATGTTCTAAACTTATAATCAGTTA-----------------------------------------------------------------------AATATGTCTCTATTAATACATAT-------------AGATACATATTTCTAAATAAATTTGAAGAT---TTCAAATTCCAGGCACA--ATATAATTCTTTTCTATCCTG i panTro2.chr4_random C 0 C 0 s loxAfr3.scaffold_13 41940771 342 + 62548349 TAATGAAGGAGGACGCAAATGGCAGTCTCATT-------AGT-GTAAAATATCAGTTTATGGAAGAGAAACAAATCTCTATTTAATTTCAATTAGAATCTCAGTATCTGAAGTGGGAATCCTGTCAATAC---TAGCAATGTTACACTGTTTCAAAATAACATATCCAAAATATGGATGTCGTTAACTCATAATCAGTTAAAAAATA-----------------TTTGTGTTACTTAATATTTTAACTGTGGAAAAGCACTCAATTCCCCCAATA--TTTTAATCTCTGTACTTATTTTCTTTAATGAAATAAATATGCCTAC----GTATAAAGACAAACTCAAGTTTGAGGGGCA--ATAATTTTTTTTTTCCTTC-- i loxAfr3.scaffold_13 C 0 I 201 e bosTau4.chr1 22925251 117 + 161106243 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28152244 337 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504225 29 - 41866177 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=27289.000000 s hg19.chr4_gl000194_random 168171 36 + 191469 TGATTTGTCATTCAGGATTTTGTAATTTG---AACAGAA s panTro2.chr4_random 3592082 36 + 6711082 TGATTTGTCATTCAGTATTTTGTAATTTG---AACAGAA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 291388 36 + 189746636 TGATTTGTCATTCAGGATTTTGTAATTTG---AACAGAA i rheMac2.chr2 C 0 C 0 s equCab2.chr26 28504254 34 - 41866177 TGATTT--TGTTCAGGATCATTTAATTTG---AACAGAA i equCab2.chr26 I 29 I 2 s canFam2.chr31 28152581 34 - 42263495 tgattt--cattCAGGGTCATATAATTTG---AACAGAA i canFam2.chr31 I 337 I 184 s loxAfr3.scaffold_13 41941314 34 + 62548349 --aCTTGCCATGTAGGATTATGTGATTTG---AACAGAA i loxAfr3.scaffold_13 I 201 C 0 s cavPor3.scaffold_34 8631371 29 + 24440124 ------AGCAAAGAGGA-TCTGTAATTTA---AGCACAA i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73453512 21 - 87759784 ------------------TCTACAACTTACTTGGCAAAG i rn4.chr11 C 0 C 0 s mm9.chr16 22815657 21 - 98319150 ------------------TTCACAACTTACTTAGCAGAA i mm9.chr16 C 0 C 0 e bosTau4.chr1 22925251 117 + 161106243 I e oryCun2.chr14 22006566 387 - 163896628 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=-14591.000000 s hg19.chr4_gl000194_random 168207 77 + 191469 --ATAT-----TTTG--------CCCTAACCACATG---TCTGTCTTTTCTCTTA-CTAAAAATATTATTTTATGTAAAATTGTTTTAAAGGTCA-G s panTro2.chr4_random 3592118 78 + 6711082 --ATAT-----TTTG--------CCCTAACCACATG---TCTGTATTTTCTCTTACCTAGAAATGTTATTTTATGCAAAATTGTTTTAAAGGTCA-G i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 291424 76 + 189746636 --ATAC-----TTTG--------CCCTAACCAC--G---TCTGTCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGTTTTAAAGATCA-G i rheMac2.chr2 C 0 C 0 s mm9.chr16 22815678 55 - 98319150 --ACAT-----TTTG--------CTTCAACCATATG---CTGATGTAT--------TTTAAGGT-------CAGGATACATTT--------GTAA-A i mm9.chr16 C 0 C 0 s rn4.chr11 73453533 68 - 87759784 --TCATATGAGTTTGTGTAGAAACATTAAGCATGTG---CTATTACAT--------TTTAAGGT-------CAGGACACATTC--------GTAA-A i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8631400 74 + 24440124 --ACATAT---TTTA--------CTTTAAACACTGT---CTTTTGTTTTACC----TGTAAAAT--TATTCCATGAAAAATTTGCTCACAAGTCA-A i cavPor3.scaffold_34 C 0 C 0 s canFam2.chr31 28152799 74 - 42263495 --aAAA-----TTTG--------CCTTAACTCATAATATCATTTCTTTTATG----TGCAAATT--TATCCCATGATA-ATTGCTTTAAAGATCAA- i canFam2.chr31 I 184 C 0 s equCab2.chr26 28504290 73 - 41866177 --ACAT-----TCTG--------CCTTAACCAACAATGTCATTTCTTTTACC----TAAAAAAT--TATCCCACGATA-ATTGCTTTAAAGATCA-- i equCab2.chr26 I 2 I 255 s bosTau4.chr1 22925368 47 + 161106243 ---------------------------------------CTTCCCTTTTACC----TGCAAAAT--TA--CCATGACA-ATAGCTTTAACAATCA-- i bosTau4.chr1 I 117 I 1 s loxAfr3.scaffold_13 41941348 76 + 62548349 ACATAT-----TTCG--------CTGTAACCCATTT-ATTTATTTTTTTACC----TGCAAAAC--TATCCCACTGTAAATTGGTTTAAAGGTCA-T i loxAfr3.scaffold_13 C 0 C 0 e oryCun2.chr14 22006566 387 - 163896628 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=121451.000000 s hg19.chr4_gl000194_random 168284 125 + 191469 TTAGCACGTTTGAAAAGCATCTTGTACAATGTTACATAAT-ATATTGCATATTTGGTTACATTGTTTTAACTGTGTAAATATGGTTTAAATCTGTGATGCTCTTTAGTGCT------GATCATGATGCAAAT s panTro2.chr4_random 3592196 124 + 6711082 TTTGCATGTTTG-AAAGCATCTTGTAGAATGTTACATAAT-ATATTGCATATTTGGTTACATTGTTTTAACTGTGTAAATATGGTTTAAATCTATGATGCTCTTTAGTGCT------GATCATGATGCAAAG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 291500 107 + 189746636 TTTGTATGTTTGAAAACCATCTTGTACAATGTTACACAAT-ATGTTGCATATTTGATTATATTGTTTTAACTATGTAAATATGGTTTCAATCTATGATGTTCTTTAGT------------------------ i rheMac2.chr2 C 0 I 3 s mm9.chr16 22815733 104 - 98319150 GGGCCTAGGTTCAACACCA-----CACAATTT--------------CAACATTTCATTATATTATTTTAGCAATGTAAACA--GTTTATATTTACAATGCTATTTTATGCT------GATCTTGATGCAAA- i mm9.chr16 C 0 I 7 s rn4.chr11 73453601 105 - 87759784 ATGCCTGGGTTCAACACCA-----CACAGTTT--------------TGACATTCCATGATGTTATTTTAGCAAAGTAAACA--GTCTATATTTGCAATGCTGTTTTATGTT------GATCTTGATGCAAAA i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8631474 117 + 24440124 TTACCTGATCTGAAAAGTATTATGTACAAGTTG----CAT-GTATCCAATATTTGAGTATATTATTTTAATTACGTAAATA--CTATCAAAT--CTATGGCCTTTAGTGTT------GACCGTGCTGGAAAA i cavPor3.scaffold_34 C 0 C 0 s bosTau4.chr1 22925416 113 + 161106243 TTTGCATGTTTATAAAACGTTTTATA---TGTCACGTTAT-ACACCCAATATTGGATTATA-----TTAGCTAT----ACATAGTTTAAATCTATGATGTTCTTAAGTATC------GATTGTGAAACAAAA i bosTau4.chr1 I 1 C 0 s equCab2.chr26 28504618 125 - 41866177 TTTGCATGTTTGAAAAGCATTTCATACAGTGTCACATTAT-ATAACCAATATTTGATTATATTACCTTAACCATGTAAATACTATTTAAATCTATGATGTTCGTTACTATA------GACCATGAAGCAAAA i equCab2.chr26 I 255 C 0 s canFam2.chr31 28152873 121 - 42263495 TTTGAATGTCAGAAAAACATTTTGTACAGCATCACACTATAACATCCAATATTAGATTATA-----TTAACTATGTAAATACTGTTTAAATCTATGATGTTCTTTAGTATT------GAGGATAAAACAAAA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41941424 126 + 62548349 TTTGCATGTTTGAAAAGTGCTTTACACAATGTCTCATTAT-ACATTCAACATTTGATT-----GATCTAACTATGTGAATACAGTTGAAAGCTATGATTCTGTCTAGTGTTGATCACGATCATGAAGGAAAA i loxAfr3.scaffold_13 C 0 C 0 e oryCun2.chr14 22006566 387 - 163896628 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=-15574.000000 s hg19.chr4_gl000194_random 168409 36 + 191469 CAAATTTATCTTT-ATAA--AAGGCTCCTGTTAA-----ttttt---- s panTro2.chr4_random 3592320 41 + 6711082 CAAATTTATCTGT-ATAA--AAGTCTCCTGTTAAtttatttttt---- i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 291610 31 + 189746636 CAAATTTATCTGT-ATAA--AAGGCTCCTGTTAA-------------- i rheMac2.chr2 I 3 I 1 s rn4.chr11 73453706 3 - 87759784 GAA--------------------------------------------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8631591 26 + 24440124 CAAGTTGAATTGT-ATTAGTAAGGTTC--------------------- i cavPor3.scaffold_34 C 0 I 3 s bosTau4.chr1 22925529 11 + 161106243 CACATTTATCT------------------------------------- i bosTau4.chr1 C 0 I 6 s equCab2.chr26 28504743 37 - 41866177 CATATTTATCTGTAATAA--GAGGCTCCTGTTGA---------TTATT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28152994 33 - 42263495 CACATTTATCTGTAATAA--TGGACTCTTGTTGG---------T---- i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41941550 27 + 62548349 CAAATTTGTA----AGAG--TAGGTTCTTGTTT--------------- i loxAfr3.scaffold_13 C 0 C 0 e mm9.chr16 22815837 7 - 98319150 I e oryCun2.chr14 22006566 387 - 163896628 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=417346.000000 s hg19.chr4_gl000194_random 168445 4917 + 191469 tttattatactttaagttttagggtacatgtgcacaacgtgcaggtttgctacatatgtacacatgtgccatgttggtgtgctgcacccattaactcctcatttaacattaggtatatctcctaatgctatccctaccccctccacccaccccacaacagtccccggtgtgtgatgttccccttcctgtatccatgtttcctcattgttcaattcccacctatgagtgagaacatgtggtgtttgattttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatggtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatactgccacaataaacatacgtgtgcatgtgtctttagagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacagtcccatcaacagtataaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacttttttatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggtcagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatttcctttgcccacattttgatggggttgtttgttttcttcttgtgaatttgtttgagttcattgtagattctggatattagccatttgtcagatgagtaggttgcaaaacttttctcccatactgtaggatgtctattcactctgatggtagtttcttttgctgtgcagaagctccttagtttaattagatcccatttgtcaattttgtcttttgttgccattgcttttggtgttttagacatggagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcaactttctacatatggctagccagttttcccagtaccatttattaaatagggaatcctttccctatttcttgtttttgtcaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctgtcctgttccattggtctatatctctgttttggtactaataccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttgccttaggattgacttggcaatgcaggctcttttttggttccatatgaactttaaagtaatttttttccaattctgtgaagaaagtctttggtagtttgatggagatggcattgaatctttaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatccttttttatttcattgagcagtgatttgcagttctccttgaagaggtccttcacatcccttgtaagtggtattcctaggtattttattctctttgaagcaattgttaatgggagttcactcatgatttggctctctgtttgtctgttattggggtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaacgagattttgggctgagacgatggggttttccacattcacaatcatgtcatctgaaaacagggacaatttgacttcctcttttcctaattgaatgccctttatttccttctccttcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgttttgtgccagttttcaaagggaatgcttccagtttttg-ccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcctatcaatccctaatttattgacagtttttagcatgaagatttgctgaattttgtcaaaggacttttctgcatctattgagataatcatgtggtttttgtctttggtcctgtttatatgctggattacgtttactgattttcatatgttgaaccagcctttcatcccagggatgaaacccgcttgatcatggtggataagctttttgatgtgttgtaggattctgtttgccagtattttattgaggatttttgcatcactgttcatcaaggatattggtctaaaattctcttttttt---ttttgtctctgccaggctttggtatcaggatgatactggcctcataaaatgagttagggaggattccctctttttctattgattggaatggtttcagaaggaatggtaccagctcctccttgtgccactggtagaatttggctgtgaattcatctggtcctggactttttttggttggtaagctattaattattgcctcaatttcagagcctgttattggtctattcagagattcaa---cttcctggtttagtcttgggaggatgtatgtgtcgaggaatttatccatttcttctagattttctagtttatttgtgtagaggtgtttataatattctctgatggtagtgtgtatttctgtgggattggtggtgatatcccctttgtcaatttttattgcatctatttgattcttctctcttttcttctttattagtcttgctagtggtctatcaattttgttgatcttttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtctctatttccttcagttctgctctgatctaagttacttcttgccttctgttatcttttgaacgtgtttgttcttgcttctctagttcttttaattgtgatgttaggatgtcaattttagttctttcatgctttctcttgtgggcatttagtgctataaatttccctccacacactgctttgaatgtgtcccagagatactggtatgttgtgtctttgttcttgttggtttcaaataacatctttatttctgccttcatttccttatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgagtggtcttgagtgagtttttaaatcctgagttgtagtttgattgcactgtgttccgagagacagtttgttatactttctgttcttttacatttgctaaggagtgctttacttccaactatgtgctcaattttggaataggtgtggtgtggtgctgaaaagaatacatattctgttgatttggggtacagagttctgtagatgtctattaggtctgcttagtgcagagctgagttcaattcctgtatatccttgttaactttctgtctcgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattattgtgtgggagtctaaatcactttgtaggtcactaaggacttgctttatgaatctgggtgcttctgtattgtgtgcatatatatttaggatagttagttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatccgagactaggattgcaacccctgtctttttttgttttccatttgcttggtagatcttcctccatccctttattttgagcctatgtgtgtctctgcacgtgagatgggtttcctggatacagcacactgatgggtcttgactctttatccaatttgccagtctgcaccttttaattggagcatttaacccatttacatttaaggttagtattgttatgtgtgaacttgatcctgtcattatgacgttagctggttattttcctcgttagttgatgcagtttcttcctagccttgatggtctttacaatttggcatggttttacagtggctggtaccagttgttcctttccatgtttagtgcttccttcaggagatcttttagggcaggcctggtggtgacaaaatctctcagcatttgcttgtctgtggagcatattatttctccctcacttatgaaggttagtttggctggatatgaaattctgggttgaaaattctttcctttaagaatgttgaatattggcccctactctcttctggcttgtagagtttctgcagagagatcagcagttagtctgatgggcttccttttgtgggtaacccgacctttctctctggctgcctttaaaattttttctttcatttcaactttggtgaatctgacaattatgtgtcttggaattgctcttctctaggagtatctttgtggcattctctgtatttcctgaatgtgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcacattcaggtaaaccaaatagacgtagatttgttctattgacatagtcccatatttcttggaggctttgttcatttctttttattcttttttctctaaacttctcttcatgcttcatttcattcatttcatcttccatcgctgataccctttcttcccgttgatcacatcggttactgaggcttatgcatttgtcgtgtagttctcgtgccatggttttcagctccatcaggtcctttaaggacttctccacattggttattctagttatccattcgtctaattttttttttcaaaatttttaact s panTro2.chr4_random 3592361 4910 + 6711082 attattatattttaagttttagggtacatgtgcacaacgtgcaggtttgttagatatgtatacatgggccatgttggtgtgctgcacccattaactcgtcatttaacattaggtatatctcctaatgctatccttcccccctccccccaccccacaactgtccccagtgtgtgatgttccccttcctgtatccatgttttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggtttttt-tccttgcaatagtttgctgagaatgatggtttctagcttcatccatgtccctacaaaggacatgaactcaacattttttatggctgcatggtattccatggtgtatatgtgccatgttttcttcatccagtctaacattgttggacatttgtgttggctccaagtctttgctattgtgaatagtgccatgataaacatacatgtgcttgtgtctttatagcagcatgatttataatcctttgggtatatacccagcaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacaccgagttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccatatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgacatgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgca-aaatgtcttcttttgagaagtgtctgttcatttcctttgcccacattttgatggggttgtttgtttttatcttgtgaatttgtttgagttcattgtagattctggatattagccctttgtcagatgaggaggtcgcaaaacttttctcccatactgtaggatgcctgttcagtctgatagtggtttcttttgctgtgcagaacctccttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtctctgcccatgcctatgtcctgaatggtattgcctggtttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatcgtgaattaatttctgtataaggtgtaaggaagggatccagtttcagctttctacctatggctagccagttttcccggcaccatttattaaatagggtatcctttccctagttcttgtttttgtcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgccctgttccattggtctatatctctgttttggtactagtactatgctgttttggttactgtagacttgtagtatagtttgaagtcaggtagcatgatgcctccacctttgttcttttg-cttaggattgacttggcaatgtgggctcttttttggttccatatgaactttaaagtag-ttttttccaattctgttaagaaagtcattggtagcttgatggagatggaattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggcatgttcttccatttgtttgtatccttttttatttcattgagcagtagtttgtagttctccttgaagaggtccttcacttcccttgtaagtggtattcctaggtattttattttctttgaagcaattgtgaatctgagttcactcatgatttggctctctgtttgtctgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttattagcttaaggagattttgggctgagacaatggggttttccacatacacagtcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaatgccctttatttccttctccttcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgtccattcagtatgatattggctgtggatttgtcatagatagctcttgttattttgagatacgtcctatcaatccctaatttattgaaagtttttagcatgaaggtttgctgaattttgtcaaaggccttttctgcatctgttgagataatcatgtggtttttgtctttggtcctgtttatacgctggattacgtttactgactttcatatgttgaaccagccttgcatcccagggatgaaacccgcttgatcatggtggataagcttttttatgtgttgctggattcggattgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctctttttttttgttttgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaacgaatggtaccagttcctgcttgtaccactggtagaattcggctgtgaatccatctggtcctggactttttttggttggtaagctattaattattgcctcattttcagagcgtgttatttgtctattcagaggttcaacttcttcctggtttagtcttgggagagtatatgtgtcaaggaatttatccatttcttctagattttctagtttatttgtgtggaggtgtttatagtattctctgattgtagtttgtatttctgtgggatcggtggtgatatcccctttgtcaatttttattgcatctatttgattcttctctcttttcttctttattggtcttgctagtggtctgttgattttgttgatcttttcaaaaaa-cagcttctgtattcattgattttttgaagggttttttgtgtctctatttccttcagttctgctctgatcttagttacttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctaattcttttaattgtgatgttaagatgtcaattttatttctttcctgctttctcttgtgggcatttagtgctgtaaatttcccccttcacactgctttgaatgtgtaccagagattccggtatgttgtgtctttgttcttgatggtttcgaagaacatctttattcctgccttcatttccttatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgagtggtttcgagtgagtttcttaatcctgagttgtagtttgattgcactgtggtctgagagacagtttgttatactttctgttcttttacatttgctgaggagtgctttacttccaactatgtggtcaattttggaataggtgtggtgtggtgctgaaaagaatacatattccattgatttggaatagagagttctgtagatgtctattaggtctgcttggtgcagagctgagctcaattactgtatatccttgttaactttctgtctcgttgatctgtctaatgttgacagtgaggtgttaaaatctcccattattattttgtgggcatctaagtcactttgtagatcactaa-gacttgctttatgaatctgagtgcttctgtattgtgtgcatatatatttaggatagttagttcttgttgaattgatccctttaccgtaatgtgatggccttatttgtctcttttgatctttggtggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtagatcttcctccatccctttattttgagcctatgtgtgtctctgcaggtgagaagggtttcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgccttttaattggagcatttaacccatttacatttaaggttagtattgttatgtgtggatttgatc----cattatgatgctagctggttattttcctcgatagttgatgcagtttcttcctagccttgatggtctttacaatttggcatgtttttgcagtggctggtaccagttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacagaatctctcagcatttgcttgtctgtggagtatattatttctccttcacttatgaagcttagtttagctgaatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccacactcttctggcttgtagagtttctgaggagagatcagcagattgtctgatgggcttccttttgtgggtaacctgacctttctct-tggctgcctttaaaattttttcaatcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggcattctctgtatttcctgaatttgtatgttggcctgccttactagattggggaagttctcctggataataccctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaattagacatacattaggtcttttcacatagtcccatatttcttggaggctttgttcatttc-ttctattcctttttctctaaacttctcttcatgctttatttcattcatttcattttccatcgctgatactctttcttccagttgatcacatcggttactgaggcttatgcatttgtcatgtagttcttgtgccatggttttcagctccatcaggtcctttaaggacttctctgcatttgttattctagttatccattcgtctaa--ttttttttcaaagtttttaact i panTro2.chr4_random C 0 C 0 e rn4.chr11 73453709 0 - 87759784 C e mm9.chr16 22815837 7 - 98319150 I e bosTau4.chr1 22925540 6 + 161106243 I e loxAfr3.scaffold_13 41941577 0 + 62548349 C e cavPor3.scaffold_34 8631617 3 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28153027 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504780 0 - 41866177 C e rheMac2.chr2 291641 1 + 189746636 I e ponAbe2.chr3 42400766 6577 + 202140232 I a score=184872.000000 s hg19.chr4_gl000194_random 173362 777 + 191469 tctttgccattggttcgaacttcctcctttagctcggagtactttgatcttctgaagtcttcctctctcaactcgtcaaagtcattctccgtccagctttgttccattgctggtgaggagttgcattcctttggaggaggataggcactctgatttttagagtttccagtttttctgctctttttt-tccccatctttgtggttttatctacctttggtccttgaagatggtgacatacagatggggttttggtgtggatgtcctttctgtttgttagttttccttctaacagtcaggaccctcagctgcaggtctgttggagtttactggaggtctcctccagacactatttgcctggggggtatcagcagtggtggctgcagaacagtggatattggtgaactgcaaatgctgctgcctgatcgttcctctggaggttttgtctcagaggggtacccggccatgtgaggtgtcagtctgtgcctactggggggtgcctcccagttaggctactcggggttcagggacccactaggtgggggttgtctgcccgttctcagatctcaagctgcatgctgggagaaccactattctcttcaaagctgtcagacagggacatttaagtctgcagaggttattgctgtcttttgttggtctgtgccctgccccccgaggtggagcctacagaggcaggctggcctccttgagctgtggtgggctccacccagttcgaacttcctggctgctttgtttacttactcaagcccgagcaatggc s panTro2.chr4_random 3597271 773 + 6711082 tctttgccactggttcaaacttcctcctttagcttggagtactttgatcttctgaagactttctctctcaactcgtcaaagtcatactccatccaggtttgttccattgctggtgaggagctgcattcctttgcaggaggagaggcactctgatttttagagtttccagtttttctgctctgtttt-ttcccatctttgtggttttatcttcctttggtccttgatgatggtgacatacagatggggttttggtgtggatgtcctttctgtttgttagttttccttctaacagtcaggaacctcagctgcaggtctgttggagtttactggaggtctactccagacattatttgcct---gggtatcagcagtggtggctgcagaacagtggatattggtgaactgcaaatgctgctgcctgatcattcctctggaagttttgactcagaggggtacccggccatgtgagatgtcagtctgcccctactggggggtgcctcccagttaggctactcaggggtcaggaacccacttga-ggaggctgtctgcctgttctcagatctcaagctgcatgctgggagaaccactactctcttcaaagctgtcagacagggatatttaagtctgcagagggtattgctgtcttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggctggcctccttgagctgtgttaggctccacccagttcaaacttcctggctgctttgtttacttactcaagcctgagcaatggc i panTro2.chr4_random C 0 I 131 s ponAbe2.chr3 42407343 770 + 202140232 tctttgccattggttcgaacttc--tcgttagctcgaatta-gttgatcttctgaag-cttcttctctgaactcgtcaatgtcattctccatccagctttgttccgttgctggtgaggagctgcatttctttggaggaggagaggcactctgatttttagagtttctggtttttctgctctgttttctccccatctttgtagttttatctacctttggtctttgatgatggtgacatacacatggggttttggtatggatgtcctttctgtttgttagtttttcttctaacagtcaggtccctcagctgcaggtctgttggagtttactggaggtccactccagaccctgttttcct---gggtatcagcagcagaggctgcagaacagtggatattggtgaactgcaaatgctgctgcctgatcgttcctctggaagttttgtctcagaggagtacccggctttgtgaggtgtcagtccgtgcttactgggtggtgcctcccagttaggctactcgggggtcagggacccacttga-ggaggcagcctgcctcttctcagatatcaagctgtgtgctgggagaaccactactctcttcaaagctgtcagacagggacatttaagtctgtagaggttattgctgtcttttgattgtctgtgccctgcccccagaggtggagcctaatgaggcaggcaggcctccttgagctgtggcgggatccacggagttcaagcttcctggccgctttgtttaggtactcaagcctgagcaatggt i ponAbe2.chr3 I 6577 C 0 e rn4.chr11 73453709 0 - 87759784 C e mm9.chr16 22815837 7 - 98319150 I e bosTau4.chr1 22925540 6 + 161106243 I e loxAfr3.scaffold_13 41941577 0 + 62548349 C e cavPor3.scaffold_34 8631617 3 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28153027 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504780 0 - 41866177 C e rheMac2.chr2 291641 1 + 189746636 I a score=106254.000000 s hg19.chr4_gl000194_random 174139 434 + 191469 gggcgcccctcccccagcccaactgttaccttgcagtttgatctcagactgctgtgctagcaaacagcaaggctccgggggtgtaggaccctccaagccaggtgctggatataatctcctggtgtgccatttgataagcctgttggaaaagcgcaatattagggtgggagtgacctgattttccaggtgccatctgtcacccctttctttgactaggaaagggaattccctgacccattgtgcttcccaggtgaggtgatgccttgccctgctatggctcatgcatggtgcgctgcacccactgtcc--------------agcactccccagtgagatgaacctggtatctcagttggaaatgcagaaatcacccgtcttctgcatcactcacgctgggagctgtagactggggctgttcctattcggccatcttggctccaccctc s panTro2.chr4_random 3598175 434 + 6711082 gggcgcccctcccccagccccactgtaaccttgcagtttgatctcagactgctgtgctagcaaacagtgaggctccgtgggtgtaggatcctccaagccaggtgctggactcaatctcctggtgtgccatttgataagcctgttggaaaagtgcagtattagggtgggagtgacctgattttccaggtgccatctgtcacccctttctttgactaggaaagggaattccctgacccattgtgcttcccaggtgaggtgatgccttgtcctgctttggctcctgcatggtgcgctgcacccactgtcc--------------agcactccccagtgagatgaacctggtacctcagttggaaatgcagatatcaactgtcttctgcatcactcacgctgggagctgtagactggagctgttcctattcggccatgttgcctccATCTTC i panTro2.chr4_random I 131 C 0 s ponAbe2.chr3 42408113 448 + 202140232 gggcgcccctcccccagccttgcttctagcttgcagtttgatctcagactgctgtgtttgcaatgagcgaggctccgtgggcgtaggaccctccaagccaggtgcaggatataatctcctggcgtgccgtctgataagcctgttggaaaagcacagtattagggtgggcgtgacccggttttccaggtgccatctgtcacccctttctttgactaggaaagggaattccctgaccgcttgtgcttcccaggtgaggcaatgccttgccctgctttggctcatgcatggtgcactgcacccactgtcctgcacccactgtctggcactccctagtgagatgaacctggtacctcagttggaaatgcagaaatcacccatcttctgtgtcgctcacgctgggagctgtagactagagctgttcctattcggccatcttgTCTCCACCCTC i ponAbe2.chr3 C 0 C 0 e rn4.chr11 73453709 0 - 87759784 C e mm9.chr16 22815837 7 - 98319150 I e bosTau4.chr1 22925540 6 + 161106243 I e loxAfr3.scaffold_13 41941577 0 + 62548349 C e cavPor3.scaffold_34 8631617 3 + 24440124 I e oryCun2.chr14 22006566 387 - 163896628 I e canFam2.chr31 28153027 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28504780 0 - 41866177 C e rheMac2.chr2 291641 1 + 189746636 I a score=65909.000000 s hg19.chr4_gl000194_random 174573 53 + 191469 TAATTTTTAACTTTCAAAAGAT-----TAG--------ATACATTTACCCTCTTCTGAATTTTAAT- s bosTau4.chr1 22925546 61 + 161106243 TGATTTTTCATTTTACAAAGAT-----TATATGCATGAATATATTCAACCTCTTCTGAATTTTCAG- i bosTau4.chr1 I 6 I 1 s rn4.chr11 73453709 51 - 87759784 TATTCTGTAATGTTCCTCTGGA-----GGG--------AACCATTTTACCTC--CTGATCTATACT- i rn4.chr11 C 0 C 0 s mm9.chr16 22815844 51 - 98319150 TATTCTGTAATGCTCCACTGGA-----AAG--------ACACATTTTACCTC--CTGATTTATAGT- i mm9.chr16 I 7 C 0 s panTro2.chr4_random 3598609 53 + 6711082 TAATTTTTAACTTTCAAGTGAT-----TAG--------ATACATTTACCCTCTTCTGAATTTTAAT- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42408561 53 + 202140232 TAATTTTTAACTTTCAAAAGAC-----TGG--------ATACATTCACTCTCTTCTGAATTTTAAT- i ponAbe2.chr3 C 0 C 0 s loxAfr3.scaffold_13 41941577 57 + 62548349 --ATTTTTAACTTTGCaaaaatatatatat--------atatattCAACCTCCTTTGAATTTTCAAC i loxAfr3.scaffold_13 C 0 C 0 s equCab2.chr26 28504780 44 - 41866177 ---------ATTTTGGAAGGAT-----TAT--------ATATATTAAAGCTCCTCTGAATTTTCCA- i equCab2.chr26 C 0 I 1 s canFam2.chr31 28153027 48 - 42263495 ----TTTTAATTTGGGGCAAAA-----T-T--------ATATCTTAAACTTCCTTTGAATTTTCAA- i canFam2.chr31 C 0 I 1 s rheMac2.chr2 291642 49 + 189746636 ----TTTTAACTTTCAAAAGAT-----TAG--------ATACATTCGCCCTCTTCTGAATTTTAAT- i rheMac2.chr2 I 1 C 0 s cavPor3.scaffold_34 8631620 50 + 24440124 ---TTTTTAAACTTAGAATGAT-----TAG--------ATATAGTGAACTTCCTCTGCATTTTAAT- i cavPor3.scaffold_34 I 3 C 0 e oryCun2.chr14 22006566 387 - 163896628 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=368005.000000 s hg19.chr4_gl000194_random 174626 250 + 191469 TCCTGATGGAAAGATTGTGAAATCTCAAGAGGATAATGAATCAG---CTTCTGATTATATTCT-GGAATTGAGATTTGATCACACATCCAAGAATGCGTAT-TCACTTTCCTTTACATTACACACATGCATAATACCATGCTGAGTGATGCTGGA--AAA-AGT--GAGTCTTCAGT-AATGCCCTCATGAAATTACA-GTCTCACT-ACACTGAGGTATTTTCTTTTTAACCCTT-TCTTTCTTTTCTGTTGT---------------------------GAAT-----------ATGTGC s panTro2.chr4_random 3598662 250 + 6711082 TCCTGATGAAAAGATTGTGAAATCTCAAGAGGATAATGAATCAG---CTTCTGATTATATTCT-GGAATTACGATTTGATCACCCATCCAAGAATGCGTAT-TCACTTTCCTTTACATTACACACATGCATAATACCATGCTGAGTGATGCTGGA--AAA-AGT--GAGTCTTCAGA-AATGCCCTCATGAAATTACA-GTCTCACT-ACACCGAGGTATTTTCTTTTTAACACTT-TTTTTCTTTTGTGCTGT---------------------------GAAT-----------ATGTGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42408614 249 + 202140232 TCCTGATGGAAAGATTGTAAAATCTCAAGAGGATAATGAATCAG---CTTCTGA-TATATTCT-GGAATCATGATTTGATCACCCATCCAAGAATGAGTAT-TCACTTTCCTTTACATTACATGCATGCATAATACCATGCTGAGTGATGCTGGA--AAA-GGT--GAGTCTTCAGT-AATGCCTTCATGAAATTACA-GTCTCACT-ACACTGATGTATTTTCTTTTTAACCCTT-TCTTTATTTTCTGCGGT---------------------------GAAT-----------AAGTGA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 291691 242 + 189746636 TCCTGATGCAAAGATTATGAAATCTCAAGAGGATAATGAATCAG---CATCTGATTATATTCT-GGAGTCACGATTTGATCACCCATCCAAGAATGTGTAT-TCACTTTTCTTTACGTT----GCATTCTTAATACCATGCTGAGTGGTGCTAGA--AGA-GGT--GAGCCTTCAGC-AATGCCTTCATGAAACTACA-GTCTCACT-GCACCGAGGTATTTCCTTTCTGACCCTT-TC----TTTTCTGCTGT---------------------------GAAT-----------AAGTGC i rheMac2.chr2 C 0 C 0 s rn4.chr11 73453760 227 - 87759784 TCTAAGTGGATTGATTATCGAGTTTCAAGAGGACA----ATGAA---GGTCTCTTTCTGTCCCTAGAAGCATGCTTTGATCTCCTATGGCACCATGTGTGT-GAATGTCCCTTCATATTGCCGAAGTACATCATTCGATGGTCACTACTCATGGACCCAA-GGT--ATAGGTTCTGT-TCTGCTTTCAGTAGCTTTAC--TCTTACT--AACATAGACAT-TTATTTTCAGCTCTT-CT-TTCTTC-------------------------------------------------------- i rn4.chr11 C 0 I 269 s mm9.chr16 22815895 241 - 98319150 TCTAAGTATATTGGATATCAAGTTTTGAGCAGATA----ATGAA---ATCCTCTTTCTGTCCCTAGAAGCATGCTTTGATCTCCCATGCCACAATGTGTAT-GAATGTCCCTTTATATTGCTGAAATACATAAGTTGGTGGTTACTACTGATGTACCCAA-GGTAGAGAGGTTCTGT-ATTGCTTTCAGTAA----------TTATT---ATGTAGGCAT-TTATTGTCATCTTTT-CT-TTCTTCATAATATTGTT------------------------AACT-----------ATTTGC i mm9.chr16 C 0 I 325 s cavPor3.scaffold_34 8631670 266 + 24440124 TCTTTATGTAAATATTATGGAATCTCAAGAGAAAAAC--ATCAG---ATTGCATTTCTAGAATCATCATCATCATTTGATCATCACTGCAACAATATGTAT-TACTATTCCTCCACATTGCACACATATATAATATG----------------------A-AGT--GAATGTTCAAT-AATGCCTTTTTGAAGTTATC--AGTTATATAAACCTAAGCATCTtcttttcttttttt-tt-tttttttttgtctttttcttttttatcggtaccagggatcgaactcacgaccacacagttgc i cavPor3.scaffold_34 C 0 I 52 s oryCun2.chr14 22006953 252 - 163896628 tccatgtgggatgcatgtggaatttcaggAGGAAAATTGATCAG---TGTCTGATTCTCTTCTGGGAATCATAATTTGATCATCTATGTGGCGATGTGTGT-TAAGTTTCTTTCATG-GATGTACTTGCATAAGACCATGCTGACAAATGTTGGA--AAA-GGT--GAAGTCCCAGTGAATGACTTTGTGAGATTATCAGACTCAGTACACCTTAGCCATTTTCTTTTAAACCCTT-TG-ATCTTTCCTGCTTT---------------------------CACT-----------AAGTGC i oryCun2.chr14 I 387 C 0 s bosTau4.chr1 22925608 194 + 161106243 TTTTGATATTAAGATTATGGAATCTTA------------------------TGATTC-------------------TGATTACCCATTCAACAATGTGTGT-GAACTCTTCTCTACATTGTACATGTATGTAATATTACACTGAGTACTGTTAGA--AAA-AGT--GCATCTTTTGC-AACATGTTTATGAAATTACCAATCTCATT-ACACCCTGGTATTTTCTTTTTAAACCTTGTCTCTCCT--------------------------------------------------------- i bosTau4.chr1 I 1 I 53 s canFam2.chr31 28153076 253 - 42263495 TTTAGATACTAAGATTATGGGATCTCAAGAGAAAAATGAATCAG---TGTCTGATTCTATTCTGGGAATCACGATCTGATCATCCGTCCAACAATGTGTGT-TAATTTTCCTTCACATTGCACACATACATAATGCCAGGTTAAGTAGTGCTAGA--AAAGGGT--GCATCTTCAGG-AACATCTTCATGAAATGGTCAGTCTCATC-ACACCTAAGTATTTTATTTTTAAACCCC-TCTTTCTTTTCTGCTAT---------------------------CAAT-----------AAATGT i canFam2.chr31 I 1 C 0 s equCab2.chr26 28504825 253 - 41866177 TTTTGAGACTAAGATTATAGAATTTCAAGAAGAAAATGAATCAGAATAGTCTGATTCTATTCTTGGAATCGTGATTTGATCACCCATCCAACAATGTGTGT-GTACTTTCCTTCACATTGCACACATACAAAATACCATGTTGACTAATGCTGGA--AAA-GGT--GCATCTTCAGG-AATGTCTT-ATGAAATTGTCAATCTCACT-ACGCCTAGATGTTTTCTTCTTAAACCCT-TCTTTCTTTTCTGCTAT---------------------------CAGT-----------AAGT-T i equCab2.chr26 I 1 C 0 s loxAfr3.scaffold_13 41941634 247 + 62548349 TCCGGATACAAAGATTATGTAACCTCAAGAGGAAAATGAAT-AG---TGCCTAATTCCATTCTGGGAATCACAATTTGGTCACCCATCCAATGCTATGTGTCTAACTTTCCCTCAAGTTGCACACATGCACAGTGCTATTCTAACTAGC-TTGGA--AAA-GGT--GCATTATCGAT-AATGCCTTCATGAAATAATTAGTCTCACT-ACATCAAGACATTTTTCTTTTAAACCTT-TC----TTTTCTGCTGT---------------------------TCTT-----------GATTAC i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=37208.000000 s hg19.chr4_gl000194_random 174876 27 + 191469 CTTCTAAG------------------------------------------AGGTGAACAAC-GGGAAAAA s panTro2.chr4_random 3598912 28 + 6711082 CTTCTAAG------------------------------------------AGGTGAACAACTGGGAAAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42408863 28 + 202140232 CTTCTAAG------------------------------------------ACATGAACAAATGGGAAAAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 291933 28 + 189746636 CTTCTAAG------------------------------------------AGATGAACAAGTGGGAAAAA i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8631988 69 + 24440124 CTTCTTATTCAACACTTTATTCTTTCTCACTACCAATGAATGCCTTGAAAAGATTAACAAGTGAGCAAA- i cavPor3.scaffold_34 I 52 I 1 s oryCun2.chr14 22007205 27 - 163896628 CTTCTCAT------------------------------------------AGAAGAACATGCAGAAAAA- i oryCun2.chr14 C 0 I 1 s equCab2.chr26 28505078 28 - 41866177 CTTCTAAG------------------------------------------AGGTAAAAAAGCAGGAAAAA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28153329 28 - 42263495 CTTCCAAG------------------------------------------AGATGAACAAACAGGAAAAC i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22925855 26 + 161106243 CTCCTGAG------------------------------------------AG--GAGCAAGCAGTGAAAA i bosTau4.chr1 I 53 C 0 s loxAfr3.scaffold_13 41941881 28 + 62548349 TTTCTAGT------------------------------------------AGATGAACAAGAAGGAAAAA i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73453987 269 - 87759784 I e mm9.chr16 22816136 325 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=525847.000000 s hg19.chr4_gl000194_random 174903 237 + 191469 CTGAAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGTATCTTCTAAGAAT-TTTTATCTCCAGAAAGCTCTAATTTTCATTCCTTTACAAGCTTTATT--TCTCTCTCCTTTCCAACACCAGACTTTGCTCTGTTTGTTTTCTATATCTTTTT--TAGAGATGCCTACAATAGAAAAAAA-------CTATGACATATTCAATACATCTGAAAAGTTTGCATTACCATAGATAAGA-ATGAATTAT s panTro2.chr4_random 3598940 237 + 6711082 CTGAAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGTATCTTCTAAGAAT-TTTCATCTCCAGAAAGCTCTAATCTTCATTCCTTTACAAGCTTTATT--TCTCTCTCCTTTCCAACACCAGACTTTTCTCTGTTTGTTTTCTATAACTTTTT--TAGAGATGCCTACAATAGAAAAAAA-------CTATGACATATTCAATACATCTGAAAAGTTTGCATTGCCATGGATAAGA-ATGAATTAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42408891 236 + 202140232 CTGAAAAAGAACCTTCATCTAATTCAGTA----ACTACCTTTTGTGTCCTCTAAGAAT-TTTTGTCTCCAGAAAGCTCTAATTTTCATTCCTTTACAAGATTTATT--TCTCTCTCCTTTCCAACACCAGACTTTGCTCTGTTTG-TTTCTCTAACTTTTT--TAGAGATACCTACAATAGAAAAAAA-------CTATGACATATTCAATACATCTGAAAATTTTGCATTGCCATAGATAAGA-ATGAATTAT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 291961 238 + 189746636 CTGAAAAAGGACCTTCATCCAATTCAGTA----ACTAGTTTTTGTATCTTCTAAGAAT-TTTTGTCTCCAAAAAGCTCTAATTTTCATTCCATTACAAGTTTTATT--TCTTTCTCCTTTCCAACCCCAGACTTTTCCTTGTTTGTTTTCTCCACCTTTTT-ACAGAGACGCCTACAATAGAAAAAAA-------GTATGACATATTCAAAACATCTGAAAATTTTACATTGCCGTAGATAAGA-ATGAATTAT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22816461 226 - 98319150 ----------------ATCTAATTAACTAGTTCACTAGCT-TCCATTATCCTAAGAAG---TTTGTGCAAAACCCTTTTCT-TTTTATTTATTTT-AAACTGCATT-TTCGTTTCCTTTTCCAACATGAGCTTTTCCTCTATTTGTTTTCTCTACCCTTTT-AAAGAGACACCTACAATAAAGAAAAATATGTAGCTATGTAACATTCAGTGCAGCTGTAAGTTCTTCATTGCTTCAGAAAAAG----TTTTGC i mm9.chr16 I 325 C 0 s rn4.chr11 73454256 243 - 87759784 CTGAAAAGGAATCAGAATCTAAGTAATTAGTTCACTAGCT-CCCATTTTCCTAAGAAA--TTTTACACAAAAAGCTTTCCA-TTTTATTTGTTTT-AAGCTGTATT-TCCTTCTTCTTTTCCAACATGAACTTCTCCTCTATTTGTTTTCTCTACCATTTA-AAAGAGACACCTACAATAAAGAAAAATATGTAACTATATAATATTCAGTGCAGCTGTAAGTTCTTCATTGCTTCAGAAAAAG----TTTCGC i rn4.chr11 I 269 C 0 s cavPor3.scaffold_34 8632058 208 + 24440124 CTAGAAAAGAACCTGGATTTAATTAAGGA----ACCAGTT-CCCTATCTCCTAAGATGTATTTGTCCCTAAATCACTCTCA-TTTTATTTCTTTTCAAGTTTTATT----------TTTTCC-----------------------CTTTCTCTGTCTTTTT-AGAGA---ACCTATTACAAAGAAATA---ATAACTGTGGCATATTCAGTCTAGTTGTACATTTGTCATTGCTACAAAAAAGGAAATTTTTGT i cavPor3.scaffold_34 I 1 C 0 s oryCun2.chr14 22007233 246 - 163896628 TTGGTCAAGGTCCTCAATCAAATTAAACA----ACTAGCTCCCCCATTTCCTAGGACATTTTGGTCTCCAAATAGCTCTCATTTTTATTTCTGTTCAAGCTGTCTTTTTCTCTTCCCTTTCCAACATCAGACTTTCCACTGTTTGTTTTCTTTATCTCTTA-AAAGAGACACCTACAATAAAGGAAAA--AACAACTGTGACATATT-AATGCAGCTGCAAATTTTGCGTTGCTATAGGGAAAAAAAGTTTTGT i oryCun2.chr14 I 1 C 0 s equCab2.chr26 28505106 241 - 41866177 CTAGAAAAGAACCTTAATCTAATTAAGTA----ACTAGTCCC--CTTCTCTTAAGAAT-TTTTGTTTTCTAATAATTCTCATTCCTCTTCCTTTCCAAGCTTTATATTTCTTTACCCTTTCCAACTTCAGACTTTCC--TGTTTGTTTTCTCTACC-TTTATAAAGAAACACCTACAGTAAAG-AAAA-AAATAACTATGACATTTCCAATGCAGCTGCAAATTCTGCACGGCTACAGAAAAGA-AGGCATTAT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28153357 238 - 42263495 CTAGAAAAGAACCTTAGTCTAGTTAAGTA----ACTAGCTCCTGTCTCTCTTACGAAT-TTTTGTTTTCAAATAATTCTCA-----CTTCCTCTTCAAGCTTTATTTTTCTTTACCCTTTCCCACACCAGACTTTCC--TGTTTGTTTTCTCTACCTTTTAAAAATAGACACCTACAGTAAAGAAAAA-AAAAAACTGTGACATTTCCAATGCAGCTACAAATTTTGTA--GCTACAGAAAAGA-AAGTATTAT i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22925881 228 + 161106243 TAGGAACAGAACATTAATC----TAAGTA----ATTAGCTCC--CCTATCTCAAGAAC-TTTTGTTTTCAAATGACT---AATTTTCCTTTTTTTCAAGTTTTGTTTTTCTTTATCCTTTCCAACACCAGACTTTCC--CATTTGTCTTCTATACCTTTTGAAA--AGACACCTACAGTAAAGAAAAA-AATATAC--TGGCATTTCCAATGCAGCTGCAAATTTTACACGGCTACAGAAAA-----GCATTAT i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41941909 247 + 62548349 CTGGAAAAGAACCTTAATCTAATTAAGCA----ACCAGCTTCCTTGTCTCCTGCTGTT-CTTTGTTTCCAAATAACTATCATTTTCTTTCCTTTTCAAGTTTTATTTTTCTCTGCTCTTTCCAACACCAGACTTTCTCCTGTTTTCTTTCTTTACCTTTTT-AAAGAGACACTTACAATAAAGAAAAAAAAAAAAACCTGACATTTTCAATGAAGATGCAGATTTTGTATTGCCACAGAAGAGA-AAGTATTAT i loxAfr3.scaffold_13 C 0 I 283 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=700264.000000 s hg19.chr4_gl000194_random 175140 201 + 191469 CTGTTTATAAAG-----AAA--AAA-CAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATCATGGAATCATCTTTATAATCCATCTGTTACAATTCCACACAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATA-GGTTTGGT--------CTTAT-AAGGC--ATACAACACAAATTTTAATTAC---------------TTTT s panTro2.chr4_random 3599177 202 + 6711082 CTGTTTATAAAG-----AAA--AAAACAATAAAAAGATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATCATGGAATCATCTTTATAATCAATCTGTTACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATA-GGTTTGGT--------CTTAT-AAGGC--ATACAACACAAATTTTAATTAC---------------TTTT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42409127 205 + 202140232 CTGTTTATAAAG-----AAA--AAAAGAATAAAAATATGAACCAAGAAAGCACAGAAGGTAATAACCACATTTAGATATTTATCATGGAATCATCTTTATAATCCATCTGTTACGATTCCACAGTGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGGTTTGAT--------CTTGTAAAGGC--ATACAACACAAGTTTTATTTACT--------------TTTT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 292199 202 + 189746636 CTGTTTATAAAG-----AAG--AAAACGTTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATCATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATG-GGTTTGGT--------CTTGT-AAAGC--ATATGACACAAATTGTATTTGC---------------TTTT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22816687 203 - 98319150 CTGTTGCAAAGA-----AAAAGAAAACAATGAAAGTATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATCATGGAATCATCTTTATAATCCATCTGTTGCAGTTCCCTAGAGAAAAATAAGAGTAATTGGAACATTT-TTATTCATTTATA-TATCTGAG--------CTTCT-AAGGC--ACATAATACAAATTTTAGTAGC---------------GTTT i mm9.chr16 C 0 I 26 s rn4.chr11 73454499 203 - 87759784 CTGTTACAAAGA-----AAAAGAAAACAATAAAAGTATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATCATGGATTCATCTTTATAATCCATCTGTTACAGTTCCCCAGAGAAAAATAAGAGTAATTGGAACATTT-TTCTTCATTTATA-TATCTGAG--------CTTCC-AAGGC--ACATAATACAAATTTTAGTAGG---------------GTTT i rn4.chr11 C 0 I 14 s cavPor3.scaffold_34 8632266 195 + 24440124 GTGTTTATAAGA-----AAA--AACTCAATAAAAGTATGAATCAAGAAAGCACAGAAGGTAGAAACCACATTTAGATGTTTATCATGGAATGATCATTATAATCCATCTGCTACAATTCCACAGAATAGAGTAGGAGTAATCAGTAAGTTTCTTCTTATTTTACA-GATTTCCA--------TTTGT-AAGGC--GTATAACATTAATTTTAGT---------------------- i cavPor3.scaffold_34 C 0 I 2 s oryCun2.chr14 22007479 180 - 163896628 CTGTTTATAAGG-----AAGAAAAAATAA--AAAATATGAACCCA-AAAGCACAGAAGGTAGAAACCACATTTAGATGTTTATCATGGAATCATCTTTATAATCCATCTGTTACAATTCCACAGACAAAATTAGGAGTAATTGGGAAGTTTCTTCTCATTTTATA-AATTTAGG--------CTCTT--AGGC--ATACCA----------------------------------- i oryCun2.chr14 C 0 I 157 s equCab2.chr26 28505347 213 - 41866177 GTGCTTATAAAGATT--AAA--AAAACAATAAAATTATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGTTGTTTATCACGGAATCATCTTTATAATCCATCTGTTTCAATTCCACAGAGCAAATTACGAGTAATTAGGAAGTTTCTCTTCATTTTATA-GATTTGGGCTTGGAAACTTTT-TAGGCCAGTACAATATAAATTTTATTTACTG----------------- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28153595 210 - 42263495 CTGCTTATGAAGA----AAA--AAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGTTGTTTATCATGGAATCATCTTTATAATCCATCTGTTTCAACTCCACAGAGCAAATTATGAATAATTAGGAAGTTTCTCCTCATTTTATA-GATTTGGGCTGTGAAGCTTGT-AAGGCAAGTACAACACAAATATTATTTACT------------------ i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22926109 224 + 161106243 CTTCTTAAAAGGGGGGAAAA--AAAACAGTAAAAACATAAACCAAGAAAGCACAGAAGGTAGTGATCACATTTAGTTGTTTATCATGGAATCATCTTTATAATCCATCTGTTTTGATTTCACAGAGCAAG-TGTGAGTAATTAGAAAGTTTC---TCATTTTATA-GATTTGGGCTTGGAAGCTTGT-AAAGTCAAGACAACACAAATTTTGCTTACTGGGTTTTTTTCTTT---- i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41942439 205 + 62548349 CTATATATACAT-----AT---AAAACAATAAAAGTATAAACCAAGAAAGCACAGAAGGTAGTAACCATATTTAGATGTTTATCATGGAATCATCTTTATAATCCATCTGTTATGATTCCACAGAACAAATGACTAGTAATTGGGAAGTTTCTCCTTATTTTATA-GTCTTCAATTTG----CATGT-AAGGCTAGTACAACACCAATTTTATTTCC---------------TT-- i loxAfr3.scaffold_13 I 283 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=346174.000000 s hg19.chr4_gl000194_random 175341 197 + 191469 CATTTTGGTATTTGGATCTT-AATTTGGTCAAGTGGCCACTGGGTAGATGATGGAGACTCTTGAGACAT----GCAGTCTTCTTCTAGCTTTGTTGATGTGAATATTACTGTG--TATTTTTCATTCACTTATTATTTTA-CAAGGCATG----CTTC-ATTAAAAATATATCAGCATCTCA-TTGACAAATCACAAAATTTAAAAGGCAC s panTro2.chr4_random 3599379 197 + 6711082 CTTTTTGGTATTTGGATCTT-AATTTGGTGATGTGGCCACTGGGTAGATGATGGAGCCTCTTGAGACAT----ACAGTCTTCTTCTAGCTTTGTTGATGTAAATATTACTGTG--TAGTTTTCATTCACTTATTATTTTA-CAAGGCATG----CTTC-ATTAAAAATATGTCAGCATCTCA-TTGACAAATCACAAAATTTAAAAGGCAC i panTro2.chr4_random C 0 I 14683 s ponAbe2.chr3 42409332 197 + 202140232 CTTTTTGGTATTTGGATCTT-AATTTGGTCAAGTGGCCACTGGGTAGATGATGGAGCCTCTTGGGACAT----GCAGTCTTCTTCTAGCTTTGTTGATGTAAATATTACTGTG--TATTTTTCATTCACTTATTATTTTA-CAAGGCATG----CTTC-ATGAAAAATATGTCAGTATCACA-TTGACAAATCACAAAATTTAAAAGGCAC i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 292401 194 + 189746636 CTTTTTGGTATTTGGATCTT-AATTTGGTTAAGTGGCCACTGGGTAGATGATGGAGCCTCTTGGGACAT----ACAGTCTTCTTCTAGCTTTGTTGATGTAAATATTACTGTA--TATTTTTCATTCACTTATTATTTTA-TGAGGCATA----CTTC-ATTAAAAATATGTCAGCATCACA-TTGACAAATCACAAAATTTTAAAGG--- i rheMac2.chr2 C 0 C 0 s mm9.chr16 22816916 174 - 98319150 TTATTTGTAGTATGG--CTT-AATTTGA----------AGCAAGTAGGTGGTGGGTTCTCATGGGACACAGAGACAGTCTTCTTATAGTTTTGATGATGTAGCTCTAATAGTGTTTTTTTCC-ATCCATGTATTATTTTA--AAAGCATA----TTTC-TCT--------ATAAGAATTACA-TTAACATATCATGAACTTGAG------- i mm9.chr16 I 26 I 298 s rn4.chr11 73454716 186 - 87759784 TTATTTGTATTATGG--CTT-AATTTGGTTATGTTCCTGCTAAGTAGGTGGTGGGTTCTCATGGGACACACAGACAGTCTTCCTACAGTTTTTATGATGTAACTCTAATAGTA--TTTTTCC-ATCCGTGTATTATTTTA--AAAGCCTA----TTTT-GTT--------ACAAGCATTACA-TTAACATATCGTGGAATTGAAAAGA--- i rn4.chr11 I 14 I 273 s cavPor3.scaffold_34 8632463 145 + 24440124 CTAAGTGTCT----------------------------GCCAAGGGGATGACAGGACCTCTTGGGTCAT----ACAACCTTTCTACAGCTTTGGCATTGTAACTAATCTAATA--TACTTCC--------CAGGATTTAA-CAAAGTACA----TTTCATTT--------AAAAGTGTTACA--CAACAAAC--TAAAATTAAA------- i cavPor3.scaffold_34 I 2 I 2 s oryCun2.chr14 22007816 197 - 163896628 cTTTTTGGCATTTGA--TTTCAACTTGGTTTTCTGGCCACCTGGTGGATT-TGAAGTCTTGTGGGACATACAGATCATCTGCCTACAGCTTTGTTGCTGTAAAT---ATAGTA--TATTTCATATGCACTTATTATTTTA-AAAAGAGTA----CAGT-ATTAAGAACACATAAACAGTACAATTTACAAATTATAGCTTTTAAAAGATAC i oryCun2.chr14 I 157 I 2 s equCab2.chr26 28505560 194 - 41866177 -TTTTTGGTATTTGAATTTC-AACCTGGGCAAATGGCCACCTGGAATATAATAGAGGCTTGTGGGACAT----ATAGTCTTCCTACCACTTGGATAATGTAAATATTATAGTA--TATTTTCCATTCCCTTTTTATTTAA-AAAAGCACA----CTTC-ATG--AAAAAAGATAGCATTATA-TCGACAAAGCTTAAAATTTAAAAGACAC i equCab2.chr26 C 0 C 0 s canFam2.chr31 28153805 195 - 42263495 -TTTTCCCCATTTGGATTTT-AATTTGGGTAAATGGCTACCGGGTGGATGATGGAGGCTTGTGGAACATACAGATGGCTTCCCCACACTTTTGATGATGACAGTA-------G--TATTTTCCATTCTCTTTTTATTAAA-AAAAACAAAAAACCTTC-ATT--TAAAAAGAGAGCATTATA-TCAACAAATCATAAAATTTAAAAGCCAC i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22926333 186 + 161106243 TTTTTTGGTATTTGAATTTT-AACTTGGGTAAATGGCCAACAGGTGTGTGATGGAGCCTTAT-GAACATACAGATAGCCTTCCTACAGCTTTGATGATATAAACACTATAGTA--TATTCTCCATTCTCTTTTTATTTAA-AAAAGGATA----TTTC-ATTTAAAAAAAGATAACATCATA-TCAGCAACTCACAA-------------- i bosTau4.chr1 C 0 I 745 s loxAfr3.scaffold_13 41942644 196 + 62548349 --TTTTTGTATTTGTATTTCTTTTTTTGGTAAATGGCCACCAGGTAAATGGTAGAACCTTGTGGGCTATACAGATAGTTTTCCTATAGTTTTGACAATGTAAATA-----GTA--TATTTTCCGTTAAATTATTAGGTAAAAAAAGCACA----CTTC-ATTAAAAACAGATAAGCATCACA-TCGACTAATCATGACATTTAAAATGTAC i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=24880.000000 s hg19.chr4_gl000194_random 175538 32 + 191469 CAGAAAAAAACAATTTATTTAAA--------A--CATTCCTG s rheMac2.chr2 292595 31 + 189746636 -AGAAAAAAACAATTTATTTAAA--------G--CATTCCTG i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42409529 32 + 202140232 AAGAAAAAAACAATTTATTTAAA--------A--CATTCCTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3614259 32 + 6711082 AAGAAAAAAACAATTTATTTAAA--------A--CATTCCTG i panTro2.chr4_random I 14683 C 0 s cavPor3.scaffold_34 8632610 31 + 24440124 AAGGAAAACAATATGGTTTTGCA-----------AGTTCCTG i cavPor3.scaffold_34 I 2 C 0 s oryCun2.chr14 22008015 34 - 163896628 GAAAAAAACTTAATGTGTTTGAA--------AGCAGTTCCTG i oryCun2.chr14 I 2 C 0 s bosTau4.chr1 22927264 33 + 161106243 --AGGAATATCAATGAGTTAAAAAAT-----A--AGTTTCTG i bosTau4.chr1 I 745 C 0 s canFam2.chr31 28154000 37 - 42263495 --AAAGAAACCTAGGTA-AAAAAAAAAAAAAA--AGTTCCTA i canFam2.chr31 C 0 C 0 s equCab2.chr26 28505754 38 - 41866177 --AAGGAAAGCAATGTGTTAAAAAATAAAAAA--AGATTCTA i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41942840 32 + 62548349 --AAGAAAATAAATACGTTAAAAAT------A--AGTTCCTG i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73454902 273 - 87759784 I e mm9.chr16 22817090 298 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=60739.000000 s hg19.chr4_gl000194_random 175570 48 + 191469 TGTAAAAGTAGTCACCACTCTTACTATTCTTCAAATATTTTTGTTAT-A------------------------------------------ s rheMac2.chr2 292626 48 + 189746636 TGTAAAAGTAGTCACCACTCTTACTATTCTTCAAATATTTTTATTCT-A------------------------------------------ i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42409561 48 + 202140232 TGTAAAAGTAGTCACCACTCTTACTATTCTTCAGGTATTTTTATTCT-A------------------------------------------ i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3614291 48 + 6711082 TGTAAAAGTAGTCACCACTCTTACTATTCTTCaaatatttttattat-a------------------------------------------ i panTro2.chr4_random C 0 C 0 s rn4.chr11 73455175 44 - 87759784 --aGGAAGGAGTTACT--TCTACCAAATCCTTAAATATTATTTTCTT-T------------------------------------------ i rn4.chr11 I 273 C 0 s mm9.chr16 22817388 46 - 98319150 atgaatAGGAATTACT--TCTGCCAATCTCCTGAGTATTATTTTCTT-C------------------------------------------ i mm9.chr16 I 298 C 0 s cavPor3.scaffold_34 8632641 48 + 24440124 AAGAAAAATAATAACCCATCTTATTAGTCTTTAAATACCTTTGTCTC-A------------------------------------------ i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22008049 45 - 163896628 TGTAAAATTTGTCACCATTCTTACTAGTC---AAGTATTTTTATCCC-A------------------------------------------ i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22927297 44 + 161106243 TGTAAAATTAGTTACCATTATT----GTCTTCAAAAATTTTTAGCCTC------------------------------------------- i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28154037 39 - 42263495 CGTAAAATTAGTTACCACTGTT----GTCTTCAAATGTTTTCG------------------------------------------------ i canFam2.chr31 C 0 I 205 s equCab2.chr26 28505792 43 - 41866177 TGTAAAATTAGTTACCACTGCT----GTCTTCAAGTATTTTTAACCC-------------------------------------------- i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41942872 90 + 62548349 TATAAAATTAGTTACCATTCTTACTGGTCTTCAAATATTTTATCCTC-ATTAAATATGTTGTTGTTGTTAGTCGCTGTCAAGTTGATTCTC i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=525453.000000 s hg19.chr4_gl000194_random 175618 321 + 191469 TTTAAACGCAAGCCTAGTTTTATCTCGAGTGTCTGACCTTGAT-GATATTGT--------ACACTTTAAACTTAG-AAAAATTGAACT--CTATTGGAAATTTCCTACAGATCAGCTTTTCTAGATGCCAA--------GCGCC-TTGTTTC-------AGCCATGGTGATGACAGCAAATTGTGTTCTCAGGGATTCTGGCCTCTGGCATCATCTCAGTTGTTTA-----TAATTGAAGTTGGGTCTGATGAGAATGCAGCTTAGATGCATGGTGGGACTGCTGGGCTTAAGGCTGGCC--TGCCAGGAGGTTGCATTGAGGTGTA--------ACTAGGCAAAGAAAGAAGGAgtttattga s rheMac2.chr2 292674 310 + 189746636 TTTAAATGCAAGTCTAGTTTTATCTCAGGTGTCTGATCT---T-CATATTGT--------ACACTTTAAACTTAGAAAAAATTGAACT--CTATTAAAAATTTCCTACAGATCAGCTTTTCTAGATGCCAA--------GCACG-TTGTTTT-------GGCCACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA-----TGATTGAAGTTGGCTCTGATGAGAACTCAGCTTAGATGCATGGTTGGACTGCTGGACTTAAGGCTGGCC--TGCCAGGAGGTTGCCTTGAGATGTA--------ACTAGGGAAAGAAAGAAGGA--------- i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42409609 313 + 202140232 TTTAAATGCAAGCCTAGTTTTATCTCGAGTGTCTGACCTTGAT-GATATCGT--------GTACTTTAAACTTAGAAAAAATTGAACT--CTTTTGGAAATTTCCTACACATCAGCTTTTCTAGATGCCAA--------TAGTC-TTGTTTT-------AGCCATGGTGATGGCAGCAAAGTGGGTTCTCAGGGATTCTGGCCTCTGGCATCATCTCAGTTGTTTA-----TAATTGAAGTTGGCTCTGATGAGAACTCAGCTTAGATGCATGGTTGGACTGCTGGGCTTAAGGCTGGTC--TACCAGGAGGTTGCCTTGAGGTGTA--------ACTAGGCAAAGAAAGAAGGA--------- i ponAbe2.chr3 C 0 I 1 s panTro2.chr4_random 3614339 321 + 6711082 tttaaatGCAAGCCTAGTTTTATCTCGAGTGTCTGACCTTGAT-GATATTGT--------ACACTTTAAACTTAG-AAAAATTGAACT--CTATTTGAAATTTCCTACAGATCAGCTTTTCTAGATGTCAA--------GCACG-TTGTTTC-------AGCCATGGTGATGACAGCAAATTGGGTTCTCAGGGATTCTGGCCTCTGGCATCATCTCAGTTGTTTA-----TAATTGAAGTTGGCTCTGATGAGAACTCAGCTTAGATGCATGGTTGGACTGCTGGGCTTAAGGCTGGCC--TGCCAGGAGGTTGCATTGAGCTGTA--------ACTAGGCAAAGAAAGAAGGAgtttattga i panTro2.chr4_random C 0 C 0 s rn4.chr11 73455219 282 - 87759784 TTCAAGCATAATCTCAGCTTTCTCCCAGGTGTGTGACCATAAT-GATAACAAAATACC--ACATTTTGTATAAGGAAAAATTGTCT----CTATTGGGCGTTCCCTACATATTACCTTCCATAGATGCT-G--------ATCTCTTTGTTTT-------AGTAACCAGGATGCCAGTGCTTTTGAGCTTGAGCAACTAGAGCCTCTACTGTGGTCTCAGACA---------TGATTCAAGTTGGCTCT-ATGAACATTCAGTTTAAGTGTATGTGTGAGTGGCTAGGATT------------TGCCAAGAGACCATTCTGAGGCATA------------------------------------- i rn4.chr11 C 0 C 0 s mm9.chr16 22817434 283 - 98319150 TTTAAGCATGAGTCCAGCTTTATCCCAGATGTGTGACCATGAT-GATACCATAACACCATATATTTTGTATAAGGAAAAAAATGAT----CTGTT-GGCATTCATTACATATGAGCTTCTGTAGACACT-G--------ATGTC-TTGTTTT-------AATGACCAGGATGCCAGTGCCTTTGTACTTGAGCAACTAGA------------GTCTCAGTCA---------TGATTCAAGTTGGCTATGATGAACATACAGCTTAACTGTA----TGAGTGGCTTGGTTT------------TGCCCAGAGACTGTTCTGAAACGTA--------TTTAGGTGAAGAGAAA------------- i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8632689 314 + 24440124 TTTGAGTATAAGCATAACTTTTTCCTAGA--TGTTACCCTGAT-GATAGAGTG-------AATTTTAGAACTAAGAAAAATTTGATCTTGCTGTTGGGCATTCCTCATATATATACTTTTCTGGATACCAG--------ATGTC-TTAAATT---------------GGAGTCAAGT---------CTTCAGGAACTGAAGTGTCTGGTTTGGTCTCATCCAGATTGTTTCTAAATGCAGCTGGCTTTGAAGAGGACTCGGCTCCATTACATGATTGAAAAATTAGGGTTAAAGCTGCTCTCTGTC---AGGCTGCTTTGAGATGTAAAACAAAATATAGGAAAAATGATAA----TTTATGGA i cavPor3.scaffold_34 C 0 I 71 s oryCun2.chr14 22008094 307 - 163896628 ATTAAATATAAGTCTAATTTTATCTCACGTGTGTGATCCTGAT-CATGC-----------AAATTTTAAAGAAACAAAAAATTGATTT--CTATTGGGCTTTGCCTACATTTCAACTTTTCTGGTTGCTAT--------AGTTC-TTGTTTT-------AGCTACCATGAGGGCTGCAAGTCAGGTCTTCTGGGGTTACAGCCGCTCATGTGCTCTTGCTTAGTTG-----TAATGTAAGCTGACTATGAGGAAGAACCAGTTTAGATCTCTGATTGGACAGGTAGGTTTCAGGTTTACC--TGCTAAGAGGTTGCCCTGAGGTATA--------ACTAGGCAGAGAGAGTA------------ i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28154281 315 - 42263495 TTTAAATGTAAGTCTAGCTCTATCCCAGTTTTGTAGCCCTGAT-GAT---AA--------AAATTTGAAACT-AAAGAAAAAAGATCT--CTATTGGGCATTGCCTACATATCAGCTTATTTATATGCTAAATACCtttatttt-tttttatttttttaaGGCCTCATGATAGCAGCAAGTCAGGTAGTCA-GAACTCTGGCCTCTGGTATGGTCTTGATTGATTA-----TAAC-----CTATCTTTGATGAGGGCTCCACTGAGGTGCATGATTGGGCACTTGGGCTTAAGGGTGACC--TGCTCAGAGGTTGCCTTGAGATCTA--------ACTCAACAAGGAGAGAG------------ i canFam2.chr31 I 205 C 0 s equCab2.chr26 28505835 313 - 41866177 CTTAAAAGTAAGCCAAGTTTCATCCCGGGTGCATGGCCCTGAG-GATATCAT--------AAATTTGAA----AAAAAAAATGTATCT--CTTTTGGGCATGCCATACATATCAGCTTTTCTAGATGCCAA--------ATTTC-TTTTTGT--------AGCACCATCATGGCAGCAAGTCAAGAAGTCAGGAACTCCAACCTCTGGTGTGGCCTTGATTGGTCA-----TAATTTAAGCTGACTGTGATGGGGGCTCAGCTGAGATGTGTGATTGGGCAGCTGGGCTTAAGGCTGATC--TGCTGAGAGGTTGCCTTGAAATGTA--------ACTCAACGAGGAGAGAACACGTTTA---- i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22927341 301 + 161106243 TTTAAATGTGAGACTGGTTTTACCCCAGGTATGTAGACCTGAT-GATATTAT--------ACATCTGAA----ACATAAAA---ATCT--CTATTGGGCATTGTCTACATATC--TTTCTCTAGATGCCAA--------ATTTG-TAGTTTT-------AGTCATTGTGATGGTAGAAAATCAGGGAGTCAGGAACTCCACCTTCTGAT-TGGGCTTGATTGGTCC-----TAATTACATTTGA--GTGATGAGAGTTCGGGCAGGATGCATGATGGGTAACATGGGCCTGAAACTGACC--TGCTGGGAGGTTGCCTGGAGGTGTA--------ACTGGACAAGAGGAGAAGGC--------- i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41942962 304 + 62548349 TGTAAATATAACCTTAGTTTTATACAAAATGTGTGACTCAGATGGGTATCAT--------AAAATTTAAACTTAAAAAAAA-GGACCT--TTGTTGGGCATTGCTT-CATATCTACTTTTCTAGA-GCCAA--------ATTCC-TTGCTTT-------ACCCATCATGGTGGCAGCACATT-GGTCCTTAGGGCTTCAG-----TGCTATGGTCTAAGTTGGTCG-----TAATTGAAGATGGCTATAATGAGGGCTCAG-TTAGATGTATGATAGGACAGCTAGGCTTAAGACTGGCC--TGCTGGGAGTTTCGCCTGAGGTGTA--------ACTAGGCAAGCAGAGAAGGA--------- i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=10720.000000 s hg19.chr4_gl000194_random 175939 118 + 191469 ggcactactgacaatagcaaagacttggaac------------caacacaaatatccaacaatgatagactggattaagaaaatgtggcacataaacaccatggaatactatgcagccataaaaatgatg s panTro2.chr4_random 3614660 118 + 6711082 ggcactactgacaatagcaaagacttggaac------------caacccaaatgtccaacaatgatagactggattaagaaaatatggcacatatacaccatggaatactatgcagccataaaaatgatg i panTro2.chr4_random C 0 C 0 s bosTau4.chr1 22927642 92 + 161106243 ----CTGGTAA-AATGGCAATGATTTTGAACTCTGGGTTGTCATAAGTCAAGCTTCCAGCACC-------------------ATGAGGCAC-----CACTGTGAGACA---------AATAAAAAGGATG i bosTau4.chr1 C 0 I 295 e rn4.chr11 73455501 0 - 87759784 C e mm9.chr16 22817717 0 - 98319150 C e loxAfr3.scaffold_13 41943266 0 + 62548349 C e cavPor3.scaffold_34 8633003 71 + 24440124 I e oryCun2.chr14 22008401 0 - 163896628 C e canFam2.chr31 28154596 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28506148 0 - 41866177 C e rheMac2.chr2 292984 0 + 189746636 C e ponAbe2.chr3 42409922 1 + 202140232 I a score=27603.000000 s hg19.chr4_gl000194_random 176057 324 + 191469 agttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacaaaa----aaacaccgcatgttctcactcataggtgggaattaaacaatgagaacacatggacacaggaagaggaacagcacacactggggcctgttgtggggtgaggggctaggggagggaaagcattaggatatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatgtcacatatatacatctgaaacaaacctgcatgttgtgcacatgtaccctagaacttaaagtataacaaaaaaaagaa s panTro2.chr4_random 3614778 327 + 6711082 agttcatgtcatttgtagggacatggatgaagctggaaaccatctttctcagcaaattatcacaaggacaaaaaaccaaacactgcatgttctcactcataggtgggaattaaacaatgagaacacatggacacaggaaggggaacagcacacactggggcctgttgtggggtgaggggctaggggagggaaagaactaggatatatacctaatgtaaatgacgaattaatgggtgcagcacaccaacatgtcacatgtatacatatgaaacgaacctgcacgttgtgcacatgtaccctagaacataaagtataac-aaaaaaagaa i panTro2.chr4_random C 0 C 0 e rn4.chr11 73455501 0 - 87759784 C e mm9.chr16 22817717 0 - 98319150 C e bosTau4.chr1 22927734 295 + 161106243 I e loxAfr3.scaffold_13 41943266 0 + 62548349 C e cavPor3.scaffold_34 8633003 71 + 24440124 I e oryCun2.chr14 22008401 0 - 163896628 C e canFam2.chr31 28154596 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28506148 0 - 41866177 C e rheMac2.chr2 292984 0 + 189746636 C e ponAbe2.chr3 42409922 1 + 202140232 I a score=118400.000000 s hg19.chr4_gl000194_random 176381 83 + 191469 GGGGTTGGGCAAAATTACCAACAATCTTCAACTAT-GAATTTGTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCCA--AGTTG s canFam2.chr31 28154596 76 - 42263495 AAGGTTG------GTTGCTAACAATTTTGAACTAT-GAGTTGTTT------TGAGTCA-AGCTTCCAACACCATCAAACATCCTG--ATATG i canFam2.chr31 C 0 C 0 s mm9.chr16 22817717 83 - 98319150 GAACACTGGCTAAAGTATAAGCAATTGTGAACTCA-GAGTTGTTT------TGAACACTGGCTTCTGACAGTATCAGGCATTCTG--AGGTT i mm9.chr16 C 0 C 0 s panTro2.chr4_random 3615105 83 + 6711082 GGGGTTGGGCAAAATTACCAACAATCTTCAACTAT-GAATTTTTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCCA--AGTTG i panTro2.chr4_random C 0 C 0 s loxAfr3.scaffold_13 41943266 81 + 62548349 --AGTTGGGCAGAGTTACTATGAATTTTCAACTGT-GAAGCGTCG------TGAGTAGGGGCTTCCAACACCATCAGACACTCTG--AGATG i loxAfr3.scaffold_13 C 0 C 0 s equCab2.chr26 28506148 75 - 41866177 -------GTCAAAACTGCTAGCAACTTTGAACTAT-AGGTTGTTA------TGCGTTG-AGCTTCCAACACTGTCAAGCATCCCA--AGATG i equCab2.chr26 C 0 C 0 s rheMac2.chr2 292984 87 + 189746636 --GGTTGAGCAAGATTACCAACAATCTTCAACTAT-GAATTTTTATTTTTGTGAGTAGAGGCTTCCCACACCGTCAGGCACTCTG--AACTG i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42409923 80 + 202140232 ---GTTGGGCAAAATTACCAACAATCTTCAATGAT-GAATTTTTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCCG--AGCTG i ponAbe2.chr3 I 1 C 0 s oryCun2.chr14 22008401 79 - 163896628 ---GTTTGGGCAAATTACTAACAGTTTTTAAAGAT-GAGTTTTGA------TGAACAGTGGCTTGCAAGACCACCAGGGCTCCTACTAG--- i oryCun2.chr14 C 0 C 0 s rn4.chr11 73455501 79 - 87759784 -----TTGACGAACGTATACACAATTGTGAACTTGTGAGTTGTTT------TGAACAGTGGCTTCTGCCAGTATCAGGCATTCTG--AGGTT i rn4.chr11 C 0 C 0 e bosTau4.chr1 22927734 295 + 161106243 I e cavPor3.scaffold_34 8633003 71 + 24440124 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=9550.000000 s hg19.chr4_gl000194_random 176464 42 + 191469 GAGA-AACAAGGGATGTTGAATTGAAAG-TTTAATTTTTTAGG-------------------------------------------------------------C s panTro2.chr4_random 3615188 42 + 6711082 GAGA-AACAAGGGATGTTGAATTGAAAG-TTTAATTTTTTAGG-------------------------------------------------------------C i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 293071 42 + 189746636 GAGA-AACAGGGGATGTCGAATTGAACG-TTTACGTTTTTAGG-------------------------------------------------------------T i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42410003 42 + 202140232 GAGA-AACAAGGGATGTTGAATTGAAAG-TTTAATTTTTTAGG-------------------------------------------------------------C i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22817800 36 - 98319150 GAGA-GATA------GTGAGCA-AAATGTTTTAGTCTGCTCCA-------------------------------------------------------------G i mm9.chr16 C 0 C 0 s rn4.chr11 73455580 36 - 87759784 GAGATTATA------GTGAGCA-AAATG-TTTAGTCTGCCCCA-------------------------------------------------------------A i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8633074 42 + 24440124 GAGA-AATGAGGGCTGTTGGCAGGAGTG-TGCTGTTTATTCAG-------------------------------------------------------------T i cavPor3.scaffold_34 I 71 C 0 s oryCun2.chr14 22008480 30 - 163896628 ------------GGAAAGGAGA-GAATG-TTTGATTTGTTTGG-------------------------------------------------------------C i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28154672 102 - 42263495 AAGA-AACAAAGGATGGTGAGTTGAGCA-TTTAGTTTGTTTGAGTTGGCAGtttgtttttttttttttttttttttttttttttttttttttttttttttaagt- i canFam2.chr31 C 0 I 198 s equCab2.chr26 28506223 41 - 41866177 GAGA-AACAAAGGATGGTGAATTGAGCG-TTTAATTCATTCAC-------------------------------------------------------------- i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41943347 42 + 62548349 GAGA-AACAAGGAATGTTGATTTCATCA-TTTAATTTGTTCAG-------------------------------------------------------------C i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22927734 295 + 161106243 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=1075300.000000 s hg19.chr4_gl000194_random 176506 508 + 191469 TTGATAGTCAGATTAGGGAAGT-------TTTGGGTACACCTTT-CCCACTCTAGAGCCCTCTCCCTAACTCAGGGCCAATTTGGGGCATgggctcagtgg-aaaagag----tgccaagatcaattagaaatatccatcatgaacataggaggcaggCATTCTGG-CCAAGGGGGTGCGTCTTCCCA----CTTTGTAATCCAGAGTGCGATTTCTTCTTGCTATCTGTC---CCTCCAT---AAATAAGCGTTGGGTGAAGGACAAGCTAGTTACCATTGAGGATG-GAATGAAA-TTCTACCAGAATTGCA-AAATGAACTGAGAGCCACGAAAGTGTTCCTCTGTGAACC--AGCAGAGAGATCTGTGGAAGGCAAAG-GAAGAGGAGCC-AAGaggccagataacattcctgcttcccctacattgtgagaatgaaattgtcagca--acctatatcagtaattaaccagaggctttttagagagtaagacttctgatagatac--ctcaatagctgaagttgctctt-cagtac-tgca s panTro2.chr4_random 3615230 507 + 6711082 TTGATAGTCAGATTAGGGAAGT-------TTTGGGTACATCTTT-CCCAATCTAGAGCCCTCTCCCTAACTCACGGCCAATTTGGGACAtgggctcaatgg-aaaagag----tactgagatcaattcgaaatatccatcatgaacataggaggCAGGCATTCTGG-CTAA-GGGGTGCGTCTTCCCA----CTTTGTAATCCAGAGTGCGATTTCTTCTTGCTATCTGTC---CCTCCAT---AAATAAGCGTTGGGTGAAGGACAAGCTAGTTACAGTTGAGGATG-GAATGAGA-TTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACGAAACTGTTCCTCTGTGAACC--AGCAGAGAGATCTGTGGAAGGCAAAG-GAAGAGGAGCC-AAGaggccagataacattcctgcttcccctacattgtgagagtngaattgtcagca--acctatatcagtaattaaccagnnagcttttagagagtaagacttctgatagatac--cntcagagctgaaagtgctctt-cagtac-tgca i panTro2.chr4_random C 0 I 1035 s rheMac2.chr2 293113 501 + 189746636 TTGAT----AGATTAGGGAAGT-------TTTGGGTAAACCTTT-CCCTCCCTAGTGTCTTCTCCTTAACTTAGGGCCAACTTGGGACAtgggttcaatgg-aaaagag----tgccaagattaatgagaaatatccatcatgaacaccgg-ggCAGACATTCTGG-CCAA-GGGGTGCGTCTTCCCA----CTTTGTAATCCAGAGTGCGATTTCTTCTTGCTATCTGCC---CCTCCAT---AAATAAGTGTTCAGCAGAGGACAAGCTGGTTACAGTTGAGGATG-GAACGAGA-TTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACGAAGGTGTCCCTCTGTGAACC--AGCAGAGATTGCTGTGGAAGGCAAAG-GAAGAGGagtc-gagaggccagatcacattcctgcttcccctacatagtgagagtgaaattgtcagca--acctgtatcaataattaaccagaggctttttagagagtaagacttctaatagctac--ctc-gtagctgaagtagctctt-tagtac-tgca i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42410045 507 + 202140232 TTGATAGTCAGATTAGGGAAAT-------TTTGGGTACACCTTT-CCCATTCTAGAGTCCTCTCCCTAACTCAGGGCCAACTTGGGACAtgggttcaatgg-aaaagag----tgccaagatcaattagaaatatccatcacgaacataggaggCAGGCATTCTGG-CCAA-GGGGTGCGTCTTCCCA----CTTTGTAGTCCAGAGTGTGATTTCTTCTTGCTATCTGTC---CCTCCAT---AAATAAGCGCTGGGTGGAGGACAAGCTGGTTACAGTTGAGGATG-GAATGAGA-TTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACAAAAGTGTCCCTCTGTAAACC--AGCAGAGAGAGCTGTGGAAGGCAAAG-GAAGAGGAGCC-AAGaggccagataacattcctgcttcccctacattgtgagagtgaaatcgtcagca--acctatatcagtaattaacgagaggctttttagagagtaagacttctgctagatac--ctcaatagctgaagtcgctctt-cagtgc-tgca i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22817836 486 - 98319150 TTGGAGCCTACATTGGGGGAAT------GTTTGAGAAAACAACC--------------------------TCAAGACAAGTATGGGACATGGGATTGATGA-CAACGTGTGTCTGTCTGGGCCAATTAGGAATAGCCATCCTGGATCCAGGAAGCAGCAGCTCTGG-CCAT-GTAATGCTTCTTTCCC----ATTTGAAATCTGGG-------CTCTCCTTTTACTATGCATAGAAATTGT---GAATGACTGTCTGGCAAGAGGCAAATTGGTCACACATGAGAATG-GACAAAGAATTCTAGCAGAAGAGCAGAAAGGAATGGAAAGTCACAAGAGT---CCTCTTTGGATC--GAAACTGAGGACTTGGGAAAATTAAGAGAGGAGGCGCT-AAGAGGCCAAATAAcctgagtgctcctttacctctgtgaaagtgaagttgtgagca--acaaatatcaataattaatcagaagctttctggagagcaagatttctaatagatTGCTCTTCAGAGCCAGCGCCCCGCTTCTGGTAC-TTGT i mm9.chr16 C 0 C 0 s rn4.chr11 73455616 470 - 87759784 TTGGAGCCCACATTGAGGAAAT------GTTTGAGAAAACCACA--------------------------TCAAGACAAGT-------ACGTGATTGAAGA-CAAAGGG----TGTGTAGGCCAATTAGGAATATCCATCCTGGACCCAGGAAACAGCAACTCTCG-TCCT-GTAATGCTTCTTTGCC----ATTTGAAATCTAGG-------CTCTCCTTTCTCTATGGATAGAAAATGT---GAATGACTGTCTGGCAAGAGACAAGCTGGTCACACATGAGAATG-AACAATGAGTTCTAGTAGAATGGCA-AAATGAATGGAAAGTCAC---AGT---CCTCTGTGGATC--AAGACTGAGGACTT-GGAACATTAAGGGAGGAGGCTCTAAAGAGGCCAAATAAccttactgcttctttacctctgagaaagtgaagttgtgagca--acacaaatcaataattaatcagaggctttttggagagcaagatttctaatagatCCCTCTTCATAGCCAGCG-CGTGCTT-TGGTACTTTTT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8633116 473 + 24440124 TTGGGAGTTAGGTTAGGGAGGTATTGTGATTTAAAAAAAAAATC-------------------CTCTAATTTAGGGCCTACTTGGAACAAGGGTTCAGTGA-AAAATTG----TG-GTAAGACAATTAGAAATATGCACCATGGCTC------GTGGTAATTCTGG-CCAA-ACCATGTTTCTTTCCC----CTTTGCAATTGAGAATATGATCTCTTCTTTCCCTATTTTTTTTTTTTTTTAAGAATGAGTGTTGGGTAGAAGA-AAACTTGTGACACTTGAGGATG-AAGAG-----------GAAAGTGCA-AAATCAATTGAGAGGCCCAGAAGTGTCACTCTGTGGGCC--AGGCCAGAGTGCTGTAGAAGAGAAAGGAAGGAG---CT-AAGAGGCCAACTAAcctcactgctctctctgtcttgtaagaaggagattgttggca--acacttatcaatatttaatcagaagctcttt--aaaataagccttctaatagatac--cttcctggctgcagtcccccTA-TGA-------- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22008510 438 - 163896628 TTAGTAATTAGATTAGAGAAGC------ATTTGGATAGACAATG-----------AGTC----CTGTGACTAAGGGCCAATGTGGGACATG-GCTCAATGA-CAAAGAG----CACAGGGTTCAACTAGACACACCCA---------------GAGGCAGTGGTGG-CCAA-AAGTTGCCTTTTTCCT----CTCTGTAGTCTAGC--GTGACTTCTTCCTCCTGTCTGTA---GCTCTCT---GAATGATTGCTGGGCAGAGGACAACATGGTCACACTTGAGGATG-GACAGAGA-TAGTAGCAAAAGTGTA-AAATGAATCCAAAGC------ATT---GTCCTGTGGGCC-----------------AGAAGACAAAGAGCAGTG------AAGAGGCCAGATAACCTCCCTGctctgt----cttgggaaagtgaaacagtcggca--acacatatcaataattaatcagaagctttttagagagtaagacttctaacagaca---cttca-----atagtccctcct-tagtac-caCC i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28154972 500 - 42263495 TTGGCAGTTTGAATAGGGAATT-------TTTGGATAAACAATTTCCAATTTTTTAT---TCTACCTAATTCAGAGCCAATTTGGTACATGGGCTCAATGG-AAAACAG----TGCTGAGATCCAGCAGAAATACTCATT-TGAGCATAGGAGATAGTCCTTCTAGTCCAA-GTGGTGCTTCTTTCTT----CTT--ATATCTAGAGTGTGA---CTTCTTGCTGATTGTC---CTTCTAT---GAGTGAATGTTGGGCAGAGGACAAGTTGCTTAGACTGGAGGATG-AAAAGAGG-TTCTAGCAGAAGTGCA-AAATAAATTGAAAGTCACAAAATTGCCTATATGTGAACC--AGGAGAGAGGGCTGTGGAAGGCAAAG-GAAGAGAAGCC-AAGAGGCCAAATAAcctcactgctttctctaccttgtgagagtgaaattgttagtg--atacatatcaataattaattagaggctttttaaaaggtaagacttctaatagatac--cttaatagctgaagtctctcct-cagtac-taca i canFam2.chr31 I 198 C 0 s equCab2.chr26 28506264 490 - 41866177 TTGATAGTGTGGTTTGGAAAGT-------TTTGGATAAACAATTTCCCACTCTTTATTCCTCTACCTAACTCAGGGCCAGTTTGGGGCATGGGCTC-------AAATGG----TCCTGAGATCCAGCAGAAATATCCCTT-TGAGCCTAGGAGATAGTTATTCTGGCCCAA-GCGATGCTTCTCTCCC----CTTTGTCATCTAGAGTGTGATTTCTTCTCACTGTTTGTC---CCTCTGT---GAGTGAATGTTGGGCAGAGGACAAGTTGGTTACACTGGATGATG-GAAAAAGG-TTCTAAGAGAAGTGAA-AAATGAATTGAGAGCCACAGAAGCATTCCTCTATAGACCCGAGGAGAGAGAGCTGTGAATGGcagag-aaagcaggatc---------------cctcattgctttctctaccttgtgagagtaaaattgtcagca--atacatatcaataattaattagaggctttttagaaactaagacttctaatagatac--cttaatagcaaaagtccctcct-cagtac-ttca i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22928029 475 + 161106243 --------------aagGAAG--------TTTGGGTAAGGAATTTTCCAGTCTTTATTCCTATGTCCAACTTGGGGCCAATTTGGGATGTGGGCTCAATGGAAAAACAG----TGTT-----------GAAATGCTTGGT-CAAGCTTAGGAGACAGT-ATGGTGGCCCAA-ATAGTGCTTATTTTCTGAAACTTTGTCATCTAGAGTGGGATTTCTTCATGCTTCCCCTC---ACCCCAC----CCCGAGAGTTGGGGAGAAGTGAAGCTGGCTATACTGGAGAATGTTAAAGAGG-GTCTAGCAGGAGTG-G-AAATGAGCTGAGAGCCACAAAGCTGTCCCTTTATGGACC--AGGGGAGAGGGCTGTGGAAGGCAGAG-GAAG----GCC-AAGAGAA-------cctcagcgctttctctaccttgtgagagtgaacttgtcagcaatatatatatcaataattaattagaggctttttagaaagtaagactactaatagatac--tttaatagctgaagtc-ctcct-cagtat-taca i bosTau4.chr1 I 295 C 0 s loxAfr3.scaffold_13 41943389 500 + 62548349 CTGGTGTTTAGGCAAGGGAAGT-------TTTGGATAACATATTTTCCACTCTT-ATTCCTCTATCTAACTT--GGCCAATCTGGCACATGGGCCATATGG-AAAAGAG----TGCTGAGATCAATGGGAAATATTCATCGTGAGCAAAGGAGGCAGCCATCAGGC-TTGG-GTGATACTTATTTCCT----CTTTGTAATCTAGAGTGTGACTTCTACTCGCTATCTGTC---CCTGGGC---AAGTGAGTGTTGGGCAGAGGGCAAATTGGTTACAGTTGATGGTG-GAAAGATA-TTTTGGCAGAAGTTCA-AAATGAATTGAGAAGCACAAAATTGTCCCTCTGTGAACC--AGGGGAGAGGGCTGCAGAA-----AG-GAAAAGaagtc-aagaggccaggtaacctcactgctttctctgccttgtgagagtgaaattttcagca--gcccatatcaataattaatcaaaagctttttagagagtaagacttgtaatagatac--ttcaatagctaaaggcactcct-cactgc-taca i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I a score=189741.000000 s hg19.chr4_gl000194_random 177014 84 + 191469 tataacctgtggacaga-ttttcatcattatta---ATTCATTTATTCAACAGATAGATATTAAATTCAAGGCATAGTTCTAAACTAT s ponAbe2.chr3 42410552 84 + 202140232 cataacctgtggacaga-ttttcatcattatta---ATTCATTTATTCAACAGACAGATATTAAATTCAAGGCATAGTTCTAAACTAT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 293614 76 + 189746636 cataacctgtg----GA-TTTTCATCATT-------ATTCATTTATTCAACAGATAGATATTAAATTCAAGGCATAGTTCTAAACTAT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22818322 85 - 98319150 CATGGCC--TAGTCAGA-GATTAGTCATGCTTAATTATTCATTTATCCAACAAATTGATATTAAATTCAAAGCATGGCCCTAAATTAT i mm9.chr16 C 0 C 0 s rn4.chr11 73456086 84 - 87759784 CATGGCC--TAGTCAGA-TTTTAGTCATA-TTAATTATTCATTTATCCAAGAAATTGATATTAAATTTCAAGCATAGCCCTAAATTAT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8633589 84 + 24440124 -AAGACT--TAGGCAGG-TTTTAGTCACAATCAATTATTAATTTATTCAACAAGTAGATACAAAAATCAAGGCATAGTCCTCAACTAT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22008948 80 - 163896628 CAGGACC--TAGACAGATTTTTAGATATTATGAATTATTCATGTATTCCACAA------ATAAAATTCAAAGCTTAGACCTAAACTAT i oryCun2.chr14 C 0 C 0 s canFam2.chr31 28155472 76 - 42263495 catgacctgtggacaga-ttttagtc-------atcATTAA-TTATTCAACAAACAG---CTAAGTTGAAGGAATAGTCTTAAACTAT i canFam2.chr31 C 0 I 4 s equCab2.chr26 28506754 86 - 41866177 catgacctgtggacaga-ttttagtccctattaATTATTCA-TTACTCAACAAATAGGTACTAAGTTCAAAGCATAGTCCTAAACTAT i equCab2.chr26 C 0 I 47 s bosTau4.chr1 22928504 82 + 161106243 catgacctgtggacagg-ttttAGTCACCATTAATTATTCATTTAGTCAACAAATGGATATTAAGTTCAA-----AGTCCTCAAGCAT i bosTau4.chr1 C 0 I 5 s loxAfr3.scaffold_13 41943889 87 + 62548349 CATGACCCACTAGTGGG-TTTTAGTCATCCTTCATTATTCATTTATTCAACAAATAGATACTAAGCAAAAGGCACTGTCCTAAACTAT i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e panTro2.chr4_random 3615737 1035 + 6711082 I a score=-25183.000000 s hg19.chr4_gl000194_random 177098 41 + 191469 GCAGTCAATTACA----AAAAA---A--------TAATAATGAAGGACA---TTAGCT-C-- s ponAbe2.chr3 42410636 44 + 202140232 GCAGTCAATTACA----AAAAATAAA--------TAATAATGAAGGGCA---TTAGCT-C-- i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 293690 44 + 189746636 ACTGTCAATTACA----AAAAATAAA--------TAATAACGAAGGGCA---TTAGTT-C-- i rheMac2.chr2 C 0 C 0 s mm9.chr16 22818407 38 - 98319150 GCAGGGGACTACAG---AAAAGGA------------------AAGGGCATC-CTGCATTC-- i mm9.chr16 C 0 C 0 s rn4.chr11 73456170 37 - 87759784 GCAGGGTATTACA----AAAAAGA------------------AAAGGTGTT-CTGCCTCC-- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8633673 40 + 24440124 ACAGGAAAGTCGAA---AAATAGAA----------------GAAAAACATCACTGCCT-C-- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22009028 34 - 163896628 GAAGGGAGTTAAA----TAAAACA------------------AAGGGCA---CTGCCT-C-- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22928591 35 + 161106243 -----GAATTAAATTTAAAAGAAA--------------AATTGAAGGCT---CTCTG----- i bosTau4.chr1 I 5 C 0 s canFam2.chr31 28155552 33 - 42263495 -----GAATTAAATC--AAACAGA--------------AATGAAGGGCA---CTCTC----- i canFam2.chr31 I 4 I 2 s loxAfr3.scaffold_13 41943976 56 + 62548349 GCAGGGAATTAAA----AAGAAAAAAACAAAAGCAAAAAAGGATGGGCAGA-CTCTTT-CTC i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28506840 47 - 41866177 I e panTro2.chr4_random 3615737 1035 + 6711082 I a score=253970.000000 s hg19.chr4_gl000194_random 177139 402 + 191469 TGCCTCATAGGACGTT-AAAACTCTAGCTGCTAAAT--GAGACAAATAGG----GTTCCCACATCAAGTGCC--TGGGC----TCCTGTTATA---------AACTGGACTCTGCTTCCATTGGCTTCTCTTGTTTCTGTTTTGATAAAC---CCATCATTTGGCTTAGTCCCTACCCTTGCCAT-GCTCA-CCCACCAGTAGGTGGACCTCCTTGACCATAACTACAGACATAGATCTTTGATTG----------------T-TTCTTTT---CAAATGTTTGCTTACTTTAGAGGTGCAGTCAAATGTTGTTTGGAC---CAGACT---CTG-AGG--CTGTGTG-TGGTTGAAACTGTCTTGAGACTCAAAGAGC-TATTGAGGA-AGGGA-TTTGATAGCTGAACTCTTTTGAAGATTTTCTCTGTCTCTCACACATCTG-------GGGCTGAATAGCTTAA-----CG s ponAbe2.chr3 42410680 403 + 202140232 TGCCACATAGGATGTT-AAAACTCTAGCTGCTAAAT--GAGACAAATAGG----GTTCCCACATCAAGTGCC--TGCAC----TCCTGTTATA---------ACCTCGACTCTGCTTCCAATGGCTTCTCTTGTTTCTGTTTTGGTAAAC---CCATCATTTGGCTTAGTCCCTATCCTTGCCAT-GGTCA-TCTACCAGTGGGTGGACCTCCTTGATGGTAACTACAGGCATAGATCT----TTG----------------T-TTCTTTT---CAAATGTTTGCTTACTTTAGAGCCGCAGTCAAA---TATTTGGACCATCAGACT---CTG-AGG--CTGTGTG-TGGTTGAAACTGTCTTGAGACTCAAAGAGC-TATTGAGGA-AGGGA-TTTGGTAGCCGAACTCTTTTGAAATTTTTCTGTGTCTCTCACACATCTG-------GGGCTGAATAGCTGAATATGTTG i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 293734 395 + 189746636 TGCCTCATAGGATGTT-AACACTCTAGCTGCTAAAT--GAGACAAATAGG----GTTCCCGCATCGTGTGCC--TGGCC----TCCTGTTATA---------ACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTGTTTTGGTAAAC---GCACCATTTGGTTTAGTCCCTATCATTGCCAT-GGTCA-CCCACCTGTAGGTGGACCTCCTTGACTGTAGCTATGGGCATAGATCT----TTG----------------T-TTCTTTT---CAAATGTCTGCTTACTTTAGAGCTGCAATCAAATGTTGTTTGGACCATAAGACT---C---AGG--CTATGTG-TGGTTGAAGCTGTCTTGAGACTCAAA---------GAGGA-AAGGA-TTTGGTAGCCGAACTCTTTTGAAATTTTTCTCTGTCTCTCACACATCT--------GGGCTGAATAGCTGAATATATTG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22818445 356 - 98319150 TGGATTATTAAA-------------TGCTGCTGATTTTTGGAGACACAAG----GGCTGCCTTTCATGTTC----GAAC----TGTAGCTATA---------AGCT-GTCTCTGCTGTTGATAGGTCCCCTGGTTCATGTTCATGTCAGT---TTGTTATTTGATTCAGCCTCTACCCCTGCTGTAACTTG-CTTATATGAATGAATGTCTCATGC--GCTAAT-ACTTGTCTA-GTCT----TTG----------------A-TATTTTTAAGTAGATGTAT----------ACACTGAA--ATAAGATGGTTTCACT-GTAAGACT---A---AAG--CTAAATACTAGCTGGAGTTGTTTT--GACTCTAATACC-TTCTGCTGA-AAATACTTTAGT---------ATTTCACA--TTCTTTGCAATTGTC-TGGTTT---------GACTTGA--------ATATATTG i mm9.chr16 C 0 C 0 s rn4.chr11 73456207 371 - 87759784 TGGATTATGGCA-------------AGCTACCAATGCTGAGAGATACAAG----GGCCGCCTTTCATGTTCC--AGAAC----TGTAGCTATA---------AGCT-GTGTCCGTTGTTGATAGCTCCCTTTGTTCATGTTGATTTCAGT---CTGCTATTTGATCCAGCCTCTACCCCTGCTGTTACTTG-TTTGTATGAGTGAATGTCTCACACCATATAAT-ACATGTCTA-ATCT----TTG----------------A-CATCTTTAAGTAGATGTAT----------ACACTGAA--AGAAGATGGTTTCACT-ATAAGACT---T---AAC--CTAAATGGTGGCTGGAATAGTTTT--GACTCTAATACT-GTCTGCTGA-AAATACTTTAGT---------ATTTTATA--TTCTTTGCAATTTCC-TGTTTTAGGTATCTAGACTTGAAT------ATATATTT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8633713 356 + 24440124 TGATTTTTAGGA-------------TGCTAA-AATACTGAGATAAATAGA----GATCCCAGGTGATGTGCCTATGATCCTGTTGTAACTGCA---------------TCTCTGCTTCTGATATGTTTCT-----------------AGT-ACTTGTCATTTGGCTAATTCCCTTCCTTTCTCATAGGCTGCCCCATCTGAGGGGAGACCTTCCTCACGGTAAC-ACCTGTTGAGGTCT----TTG----------------C-TGCTTTT---CAAATGTCT----------AAGATGCAGTAGAATGTGGTTTCAATCATCAGACT---G---AGG--CCTATTATTAGCTGCAATTATCTT--GTGTCAAAACCT-TTCGAAAAACAGAAATTTTAATGGC----CAGTTTTGAA--TTTTTCCTATCTCTCATATATTAG-------AGCCTGT--------ATGCACTG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22009062 384 - 163896628 TGACTCAAAGGACACC-AACACCCTCGCTGCTAACA--GAGACAAACAGG----AACTCCATGCTGTGTACA-----------TGCACATGTACCATGCACCATCA-GGGACTGCTTCTAATGTCTTCTCTTGTTC---TTTTGGTCAGT---GCATCATTTGGCTCATTTTCTGCTGCTACCGTGGCTCG-CTCACTTGGAGGTGGACTTCCCTCACCATATCAACCTGTATAGATCT----TCG----------------GTTATTTCTTTTCAAATGTCTGGTTACCTTAGAACGGCAATAGAATATGGTTTGGACCATGAGACTTTGA---GAC--TTAAGTGATGGCTGACCGTGTTTT--GATTCAAC---------------ATGGAGCCTGGTAGTCAAGCACCTTTGAA--CTTTTTCTATCTATCACACATCTG-------AGGCTAA-------------TGG i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22928626 381 + 161106243 TGGCTCTGAGGATATT-AAAATCCTAGGTGCTAAC----AGAAAAATAGG----GATCCCATGTCATATACT--TGGGC----TCTAATTACA---------ACTGGAACTCTGTGGT-GATCTGTTCCCTTGCTCTTGT------AACTTGCCTGTCGTTTGGCTCACTCCCTATCCGTCACATGGCCAA-CTTACTTGTAGATTCATGTCCTTCACTGTAACTACCTATCTAGATA------------------------C-TTGTTTT---TAAATTTCTAGTTAACTTAAAGCCACGATAGTGTGTAGTTTGGAACATGAGA-T---TTA-AGG--ATAAGTAATGGCTGAAGTTGTCTC--AAGTCAAGGTCC-TGTGAAAGA-AGGAA-ATTAGTAGCCACACTGCTTTGAAATTT---TCTGTCTTTCATGCATCTG-------GGGCTGA--------AAAAA--- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28506887 407 - 41866177 GGCCTCATAGGACATT-AAAATCCTATCAGCTAACT--AAGAAAAATAGG----GATCCTATGTCATAAACC--TAGGC----TCTAGTCATA---------ACTGGGACTCTGCTGCTGACCTGTTCCCTTATTCTTGTTCTGGTCACTTGCCTCTCGTTTGGTTC-TTCCCTACGCCTGCCATGGCCAG-CCCACCTGTGGATGGAACTTTCTCACAATAACTACCGACTGAGATTG----TAGGTTGT--------TTGT-TTCTTTT---TTGATGTCTGGTTACTTTAGAGCTGCAATAGAATGTGGTTTGGAACATGAGTCT---CTG-AAG--ATAACTAATGGCTGAACCTGTCTT--GACTCAAAGACC--GTTGGGGA-AGGAA-TTTAGTAGTCAAACTCCTTTGAAAGTTTTCTCTGTTCTTCACACATCTG-------GGGCTGA--------ATATATTG i equCab2.chr26 I 47 C 0 s canFam2.chr31 28155587 397 - 42263495 TGCCTCATAGGACATTAAAAAACCTAGCTGCTAAGT--GAGAAAAATGAGGATAGATTCCATGTC-TATACC--T-GGT----TCCGGTTCT----------ACTGAGACTCTGTTGA-GATCAGTTTCCTTGTTCTTGTTCTGG--------CTATCATTTGGCACACTCCGTACTTCTGTCAGAGTAAA-CCCACCTGTGGATGAAACTCTGTCACCCTAACTACCTATTTTGGTCT----TTGATTAT-----------T-TCCTTTT---TTAATATTTGATTAC-TTATAACTGCAAGAAAATGTACTTTGAAACATGAGGCT---CTG-AGGCTCTGAGTAATGGATGCAACTGTCTG--GACTCAAAGACCTTTTTAGGGG-AGGAA-CTTAGTGGCCAAAC----TTAAAAATTGTCTTTATTCTTCACACATCTG-------GGGCTGA--------ATTTGTTG i canFam2.chr31 I 2 C 0 s loxAfr3.scaffold_13 41944032 402 + 62548349 TACCTCACAGGATTTT-AAAACCCTAGCTGCTAACT--AACACAAATTGG---AAGCTCCATATCCTGTACC--TGGGC----TACAGTTACA---------GCCAGGACTCTGTTTCTCATCTGTCCCCTTGTTCTTGTTTTGGTAACCTACCTATAAATTGACTTGTCCCTTGCCCTTACCAT-GCCTA-CCCACCTGTGGATAGACCTC----ATTATAACTACCTGCCTAGACTG----TTGATTGCCTTTTTGTTTGT-TTGTTTT---CTAATGTTT--------TACAGCTGCAGTATAATGTGGTTTGGGACATGAAACT---TTGAAGA--CTAAGTAATGGCTGAAACTGTCTT--GATTTGAAGGCC-TTTTGATGA-AGGAA-TTTAGTAGCCAAACTCCTTGGAA--AAATTTTTGCCTTTCACACATCTG-------GGTCTGAAttgtt---------- i loxAfr3.scaffold_13 C 0 I 857 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e panTro2.chr4_random 3615737 1035 + 6711082 I a score=331396.000000 s hg19.chr4_gl000194_random 177541 177 + 191469 TTTAATTTCT--ACATCGATGATAGTTTAATAGCCATTCATGCAAATCAGTTCTGCTGTGAG-TTATTATCCTACTCCAATACCAACTAACGCATTCC----TTAAATTTAGTGTACATATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATGGCTG--CTATAGAATATACTAGATTGTG s ponAbe2.chr3 42411083 178 + 202140232 TTTAATTTCT--ACATCAATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTCC----TTAAATTTAGTGTAGGTATAAATTCTACATGGAAAGTGAA-GCTGTCTTTATGAATTGCTG--TTATGGAATATACTAGATTGTG i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 294129 178 + 189746636 TTTAATTTCT--ACATTGATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTCC----TTAAATTCAGTGTAGGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTG--CTATAGAATATACTAGATTGTG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22818801 164 - 98319150 TTCAGTTTTT--CCATCAATGA-ATTATT-----------AACAGGTC--TTATAGTAGTGATCCGTTATTGTACTTCACTAGTAACTAGTGCATTCA----TTAAATTTGGTTTACTTATGAATTA-ATATGGTATCAGAATGTTATCTTAATGAATGGTTC--TTATACCGTATCTCAGACTTTG i mm9.chr16 C 0 I 3812 s rn4.chr11 73456578 164 - 87759784 TTTAGTTTTT--CCATCAATGG-ATTATT-----------AATAGATC--TTGTAGTCGTGATCTGTTATTATACTTCACTAGTAATTTGTGCATGCA----TTAAATTTAGTGTAATTATAAATTG-ATATGGTATCAGAACATTATCTTAATGAGTGGTTT--TTATGCAGTATCCCAGACTTTG i rn4.chr11 C 0 I 554 s cavPor3.scaffold_34 8634069 178 + 24440124 TTTAATTTTTAACCATTGCT---ATTATGACACGCATGCAAACAGA----TTCTAGTAGAAGTCTATTATTCTTATCCAATAGCAAGTAATGCATCCCTTATTTAAATACAGAGTAAATATAAATTTCATACATAATGGGAA-ATTAACTTTATACATTGTTTTATTAAGAAG-ATACTAGACTGCA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22009446 182 - 163896628 TTCAATTTCT--GCATCGATGGTATTTTAACATACAATAACGCAGATCATTTCTGTGAAGGGTTTATTTTTCAACTCTAATAGTAAAAAGTGCATTCCTTACTGAAATTCAGTGTTAATATATACTCCAAATGGCATGTGAA-GTTACTTTTACTAATTACTA--CCATATAATATATCAAATTGTG i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22929007 170 + 161106243 -ATAATTTCT--ACATCAGTGATACTTTAATAGGCATTTATGCA----------GGTGGGAGTCTGTCATTCTCCTCCAGTAACAAGT-GTACATTCCTTACTTCAATTTAATGTAAGGATAAATTCCAGATGGTATATAAA-GTTATCTTTTTGAATTACAG--CTATAGAATATTCCAGACTGTG i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28507294 182 - 41866177 TTTAACTTCA--ACGTCAGTGATATCTTGATAGGCATTCATGCAAATCGGTTCTGATGGAAGTTTACTATCCTTCTCCAATAACAAGCAATACATTCCTTACTTAAATTCAGTGTAAGTATAAATACCATATGGTATGTAAT-GCTATCTTCTTGAATTACTG--CTATAGAATATTCCAGATTGTA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28155984 180 - 42263495 TTTAATTTCT--ACATCAA-GTTATTCCAACATG-ATTCACGCACATCAGTTCTAGTGTGAGTTTAGTATCTTCTTCCGATAACAAGGAATCTACTCCTTACTTAAACTCAATATAAATATAAATTCCTTATGATATGTAAA-GCTATCTTTTTGAATTACTA--CTATAGAATATATTTTATTGTG i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41945291 178 + 62548349 TTTAATTACT--TCATCAATAATATTTTAACAGACATTCATACAAATACATTCTG----AAGTGAACTATCTCTTTCCAATAATAATTAATGCATTCCTTATGTAAATTCAGTGTAAGTATAAATTCCATATGGTATGTAAA-GCTGTCTTTATGAATAACTT--CTATATAATATACCAGCCTGTG i loxAfr3.scaffold_13 I 857 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e panTro2.chr4_random 3615737 1035 + 6711082 I a score=266343.000000 s hg19.chr4_gl000194_random 177718 262 + 191469 TAGGTTTTAGTACAATCCAGGTAATTATCAAGCCTTTGTAAT-ATTTTCAGGAAAGTGATCCTTTCACTTCAGTTTA---TGGAACTTGAAAATTTTT--TAGTTGCCACCGACTAGTTAGATCATAAACTTAATTCTATGTATC------------------------------------------------------------------------------------------TGAATTTATTTTTCTATTTATAAATTTATCTGGGTGCTTTCTCAAAGGTTTCCCAGATTAAAAACC-TATGGCTTTGTAAAATTAAAACAGAAGTAA-----TAGGAATTGTGTTAAAAAACAGAATCA s ponAbe2.chr3 42411261 233 + 202140232 TAGGTTTTAGTACAATCCAGGTAATTATCATGCC-TGGTAAT-ATTTTCA-------------------------------GGAACTTGGAAATTTTT--CATTTGCCACCCACTAGTTAGATCATAAACTTAATTCTATGTATC------------------------------------------------------------------------------------------TGAATTTATTTTTCTATTTATAAATTTATCTGGATGCTTTCTCAAAGGTTTCCCAGATTAAAAACC-TATGGCTTTGTAAAATTAAAACAGAAGTAA-----TAAGAATtctgttaaaaaacagaatca i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 294307 261 + 189746636 TAGGTTTTAGTACAATCCAGGTAATTATCAAGCC-TTGTAAC-ATTTTCAGGAAAGTGACCCTTTCACTTCAATTTG---TGGGACTTGGAAATTTTT--CAGTTGTCACCCACTAGTTAGATCATAAACTTAATTCTATGTATC------------------------------------------------------------------------------------------TGAATTTATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGATTAAAAACC-TATGGCTTTGTAAAAGTAAAAGAGAAGTAA-----TAAGAATCGTGTTAAAAAACAGGATCA i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8634247 262 + 24440124 TGAATTTCA-GATAATCCAAGTCATTTTCCAATA-TCTTAGCATTTTAAAAGTAAGAAATCTTTTCATTTTACTTTAGAGTAGGATTTTAAAACTTAT--CAGTTACTATCTACCAGTTAAAT-ATGAACTTAATTTGACAGACT------------------------------------------------------------------------------------------TAAGTTTATTTTTTTACTTGTGAAATTATCTGGATGCTTTCTCACAGACTTCCCAGATTAAAAAAT-TAT-ACTTTTTCAGGAAAGAACTGATAATT-----TAAAAGTTGAACTAAAAAACTCAATTA i cavPor3.scaffold_34 C 0 I 1396 s oryCun2.chr14 22009628 250 - 163896628 TGTATTTTAGGACATTCAAGGTAGTTTTCAAATA-TTTCAAC-CTTTGTTGGAAAGTAATCCTTTCATTTTAGTTTA---TTAGACTTTAAAACTTAT--CATTTGCCATTTGCTATTTAGA--AAATATTTAATTCTATATTCC------------------------------------------------------------------------------------------TAA-TCTATTTTACTATTTATAACATTA----GAT--TCTCTCAAAACTCTCCTAAACTAAAAAATCTATGACTTTGTTAAAATAGAAGAAATAATC-----TAAGAACTGCATTAAAAAACAGAA--- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22929177 327 + 161106243 CAGGTCTTAGGACAATCCAGGTGATTTTCATGCA-CTTGAAC-CTTTTCAGGAAAGTGATCCTTTCATTTCAGTTTA---TATGACTTTAAAACTTGTTTAAGTTTCCATCTATTAGTTGGAACACTGGCTTGTTTCATCATGCCAGAGtttatttttcttttcttttttttctgtttttaaactttacaaagttgtattagttttgccaaatatcagaatgaatccaccacaggtatacatgtttttcTGTTTATCAATTTATCTAGATGCTTCCT--GTGTCCCTC--------------TATGGCTTTTTGAAAATAATGGAGAAGTAATG---TAAGAATTGTGTTT------------- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28507476 231 - 41866177 TGAGTTTTAGGATAGTCAAGGAAATTTTTAAGTA-TTTTAAC-ATTTTCAGGAAAATGTTCCTTTCGTTTAAGTTTG---TAGGACTTTAAAACTTAT----GTTACCATCTACTAGTTGGATCACTCGTTTAATTCTGCATGCC-----------------------------------------------------------------------------------------------TAATTTTTCTGTTTATCAAATTATATAGATGCTTTCTCAAAGCCCTCC--------------TGTAGCTTTTTGAAAATAAA--AGAAGCAATCATTTAAGAATTGTGTTT------------- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28156164 242 - 42263495 TGGGTTTTAGGATAGTCAATATAATTTTCAAGCG-TTTAAAA-ATTTTCAGGGAAGTATTCCTTTTGTTTTAGTTTA---TAGGACTTTAAAACTTGT--AAGTTACCACCTACTAATTAAATTACTAACTTAATACATCCCGAC---------------------------------------------------------------------------------------------ATTTATTTTTCTACTTATCAAATTATCTAGTTGTTTTCTCAAAGTTCTTC--------------TATGGCTTTTTGAGAATAAAAGAGAAGTAATGATTTAAGAATTGTTTTTAAAAC-------- i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41945469 249 + 62548349 TGGGTTCTAGGACACTCCAGGTAATTTTAAAGCC-TTTCAAG-ATTTTCGGGAAAATGTTCTTTTCATTTCAGTTTA---TGGGTCTTTAAAGCTTAA--AAGTTGCCAACTGCTAGTTGACTCACTAATTCCATTCTCCATGGC------------------------------------------------------------------------------------------TACA-TTATTTGTCTGTTTATAAAATAAT-TGTATATATACTCAAAACCCTCCCAGGTTTAAAACT-TATGATTTTGTGaaaataaaagataaataataatttaaaaattGTGT--------------- i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73456742 554 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e panTro2.chr4_random 3615737 1035 + 6711082 I a score=14318.000000 s hg19.chr4_gl000194_random 177980 77 + 191469 ggccaagcctggtggcttatgcctctaatgccaacacttagggatgccaaggggggaggatcatttgaggtcaggag s ponAbe2.chr3 42411494 62 + 202140232 ggccaagcatggtggcttatgcctgtaatgccagcccttagggaggccgaggcaggaggatc--------------- i ponAbe2.chr3 C 0 M 4548 s rheMac2.chr2 294568 77 + 189746636 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggccgaggcgggaggatcatttgaggtcaggag i rheMac2.chr2 C 0 I 310 e rn4.chr11 73456742 554 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e bosTau4.chr1 22929504 0 + 161106243 C e loxAfr3.scaffold_13 41945718 0 + 62548349 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e oryCun2.chr14 22009878 0 - 163896628 C e canFam2.chr31 28156406 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28507707 0 - 41866177 C e panTro2.chr4_random 3615737 1035 + 6711082 I a score=17623.000000 s hg19.chr4_gl000194_random 178057 229 + 191469 ttcaagaccagcctggacaacatggcaaaaccccacatgta-ttaaaaaaatacacaaattagctgggcgtggtggtgaatgcctttagtcctagctactcaggaggctaaggcaggagaatagcttgaacttgggaggctgaggttgcagtgagccaagatagagccactgcattccagcctgggtgacagagtgagatcctgtcttaaaaaaaaggaaaaaagaaaaa s rheMac2.chr2 294955 230 + 189746636 ttcgagaccagcctggccaacatggcaaaaacccacctctaatttaaaaaatacacaaattagctgggcgtggtggtgaatgtcttcagtcccagctactcagaaggctaaggcaggagaattacttgaacccgggaggctgaggttgcagtgagccaagacagtgccactgcactctggcctgggtgacggagtgagatcctgtctcaaaaaaaacaaaaaaaaaaaaa i rheMac2.chr2 I 310 C 0 e rn4.chr11 73456742 554 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e bosTau4.chr1 22929504 0 + 161106243 C e loxAfr3.scaffold_13 41945718 0 + 62548349 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e oryCun2.chr14 22009878 0 - 163896628 C e canFam2.chr31 28156406 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28507707 0 - 41866177 C e panTro2.chr4_random 3615737 1035 + 6711082 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=58782.000000 s hg19.chr4_gl000194_random 178286 122 + 191469 gaaaaaa-------------------CAGAATCA-TACAATGAGAGAGATTGTATAGCCCTTTTAATTGTCCATAATGGATACATTTCTTTTTC-TGTGTAATAGTTTATCAGCATGAAAAAAAAGAGTCACTGAACACTGAT s rheMac2.chr2 295185 139 + 189746636 aaaaagaaAAGAAAATGAAAGAAAACCAGAATCA-AACAATGAGAGAGGTTGTGTAGCCCTTTTAATTGTCCATAATGGATCCATTTCTTTTTC-TATGTAATAGTTTATCAGCATGGAAAAA--GAGTCACTGAACACTGAT i rheMac2.chr2 C 0 C 0 s loxAfr3.scaffold_13 41945718 119 + 62548349 GA-AAAAC------------------TAGAATCA-AATAGTGAGAGAAGTTGTGTATTCCTTCCAGGTGCCCATAGTGAATACATTTCTTTTTC-TGTCTGATAGTTTATCAGTCTTAAA---AATGGTCACTCAATCTTGAC i loxAfr3.scaffold_13 C 0 C 0 s canFam2.chr31 28156406 103 - 42263495 --------------------------CAAAATTT-TATAATAAGA--AGTTATATATTCTTTTCAGGTGTCCAGAATGGACACACTTCTTTTTC-TGTGTAATAGTTTGTCATTAAA------AATAGTTTTTCAACAC---- i canFam2.chr31 C 0 C 0 s oryCun2.chr14 22009878 83 - 163896628 ----------------------------------TAAAATGATGAAATAATTTTTGTCTCTTTCAGGTGTCCATAATGAA-----TACATTTTCCTATGTAACAGTTTATTAGCATTAAAAA--------------------- i oryCun2.chr14 C 0 I 1 s rn4.chr11 73457296 74 - 87759784 --------------------------CAGAATCG-AATGCAAAGAAATGTTGAATATTCCTTTAAAGAATCAATACTGAAAATGTTTCTTTTTCATATGTA------------------------------------------ i rn4.chr11 I 554 I 4532 s equCab2.chr26 28507707 114 - 41866177 ---AAAAC------------------CAGAATTA-TATAGTGAGAGCAGTTGTATGTTCCTTTCAGGTGGCCATAATAGATACATTTCTTTTTC-TGTGTAATAGTGTGTCATTAAA------AACAGTTACTCAACTCTGAT i equCab2.chr26 C 0 C 0 s bosTau4.chr1 22929504 104 + 161106243 ---AAAAC------------------CAGAATCC-TATAGTGGGAGAGGGTATATATTTTTTTCAGGTGTTCATAATGGATACATTACATTTTC-AGTGTAATAGTTTGTCAATAA----------AGTCACTCAAC------ i bosTau4.chr1 C 0 C 0 e mm9.chr16 22818965 3812 - 98319150 I e cavPor3.scaffold_34 8634509 1396 + 24440124 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e panTro2.chr4_random 3615737 1035 + 6711082 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=16532.000000 s hg19.chr4_gl000194_random 178408 92 + 191469 AATTTTCTTTCTCTCTCTCTCTCTCTCtttttttcctttttttggagatgaagtctcgctctgttgcccaggctggagtgcaatggcaacat s rheMac2.chr2 295324 89 + 189746636 AATTTTCTTTCTGTCTCTCTCt---tttttttttccttttttttgagatgaagtctcgctctgttgcccaggctggagtgcaagggcaacat i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3616772 91 + 6711082 -ATTTTCTTTCTCTCTCTCTCTCtttttttttttcctttttttggagatgaagtctcactctgtcgcccaggctggagtgcaatggcaacat i panTro2.chr4_random I 1035 C 0 s loxAfr3.scaffold_13 41945837 19 + 62548349 AACTTCCATT-------------------------------------------------------------------------TAGTAATAT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e bosTau4.chr1 22929608 0 + 161106243 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e oryCun2.chr14 22009961 1 - 163896628 I e canFam2.chr31 28156509 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28507821 0 - 41866177 C e ponAbe2.chr3 42411556 4548 + 202140232 M a score=9974.000000 s hg19.chr4_gl000194_random 178500 37 + 191469 ctctgttcactgcaaccttcacatcctaggttcagga s panTro2.chr4_random 3616863 37 + 6711082 ctctgttcactgcaaccttcacatcctgggttcaggc i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 295413 37 + 189746636 ctctgttcactgcaacctccacatcctgggttcaggt i rheMac2.chr2 C 0 C 0 s tupBel1.scaffold_136731.1-86001 58402 34 - 86001 CTATGT---CTTCAATTCTTTCATTTCTGCCATAGGA i tupBel1.scaffold_136731.1-86001 N 0 I 7191 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e bosTau4.chr1 22929608 0 + 161106243 C e loxAfr3.scaffold_13 41945856 0 + 62548349 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e oryCun2.chr14 22009961 1 - 163896628 I e canFam2.chr31 28156509 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e equCab2.chr26 28507821 0 - 41866177 C e ponAbe2.chr3 42411556 4548 + 202140232 M a score=19900.000000 s hg19.chr4_gl000194_random 178537 85 + 191469 gattttcctgcctcagcctcccaagtagctgggattccaggtgcaccccgtcatgcctggataaatttttgtattttcagtagag s panTro2.chr4_random 3616900 85 + 6711082 gattttcctgcctcagcctcccaagtagctcggattccagggacatcccgtcatgcctggataagtttttgtattttcagtagag i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 295450 85 + 189746636 gattctcctgcctcagcctccccagtggcagggattacaggtgtatcccaccatgcctggataagtttttgtatttttagtagag i rheMac2.chr2 C 0 C 0 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e bosTau4.chr1 22929608 0 + 161106243 C e loxAfr3.scaffold_13 41945856 0 + 62548349 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e oryCun2.chr14 22009961 1 - 163896628 I e canFam2.chr31 28156509 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e equCab2.chr26 28507821 0 - 41866177 C e ponAbe2.chr3 42411556 4548 + 202140232 M a score=14040.000000 s hg19.chr4_gl000194_random 178622 74 + 191469 acgggttttcatcatgttggccaggctggtctcaaactcctgacctcaaatgatctgcccgccttagcctccca s rheMac2.chr2 295535 74 + 189746636 atggggtttcatcatgttggccaggctgatctcgatctcctgagctcaaatgatctgcccgcctcagcctccca i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3616985 74 + 6711082 acggggtttcatcatgttggccaggctggtctcaaactcctgacctcaaatgatctgcccaccgtagcctccca i panTro2.chr4_random C 0 C 0 s bosTau4.chr1 22929608 13 + 161106243 GCAGGTTTTCATC------------------------------------------------------------- i bosTau4.chr1 C 0 C 0 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e loxAfr3.scaffold_13 41945856 0 + 62548349 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e oryCun2.chr14 22009961 1 - 163896628 I e canFam2.chr31 28156509 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e equCab2.chr26 28507821 0 - 41866177 C e ponAbe2.chr3 42411556 4548 + 202140232 M a score=12725.000000 s hg19.chr4_gl000194_random 178696 32 + 191469 aattactggTGATGATTTTCATTTAATGGTGT s bosTau4.chr1 22929621 9 + 161106243 -----------------------TAAAAATGT i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28156509 20 - 42263495 ------------TGATTTTCATTTAACAGTGG i canFam2.chr31 C 0 C 0 s equCab2.chr26 28507821 15 - 41866177 ---------------TTTTCATCTAAC--TGT i equCab2.chr26 C 0 C 0 s panTro2.chr4_random 3617059 32 + 6711082 aatcactggTGATGAGTTTCATTTAATGGTGT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 295609 32 + 189746636 aagtgttggTGATGATTTTCATTTAATGGTGT i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22009962 32 - 163896628 AGTCACTCAAGCTTAATTTCATTTAGTAGTGT i oryCun2.chr14 I 1 C 0 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e loxAfr3.scaffold_13 41945856 0 + 62548349 C e cavPor3.scaffold_34 8634509 1396 + 24440124 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=267936.000000 s hg19.chr4_gl000194_random 178728 265 + 191469 TCTACAAAGTGAGTTTAGGCAGTGAAAGGGCAC---AAG---TCACCTATAGTTTACCAGAAAGTAGTACCAGTCACCAGCGTTGAA-GCATACTCCTAACCCTGGAAAA-TTTCTTCAGCAGCCAGAATTAATGTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGTATGTGTTCATTTAGATTAGTAAATCTCTATGGTGTTCGA----------------------------------ACTGTATA-----------------ATATCAA--------------------------------------------------ATCTAAAATAAGTCAAGAGAGTTAGACAATATCTCATCTCTGAGAAA-AT s oryCun2.chr14 22009994 259 - 163896628 TTCATCAAATGAG-TTAGTCTGCTAAAGGGCACTTAAAA---TTATCTATAATTTACCAGAG---AGCACCAATCACCAAC-CTGAT-GCATAGCCTGAACCTTGAACAA-TTTCTTCAGTGGCAGGAAGTAATCCTAACCTTTAAGAAAGAAACCAAGGCTAATTTGACATGTGTTCATCCAGAATCATAAGTCCTTGTAACATTTGA----------------------------------ATTGTGTA-----------------ATATCAA--------------------------------------------------AGCCAGTATGATCCCAAAGTATTGGATAAT-TTTTATCTTTTAAGA---- i oryCun2.chr14 C 0 C 0 s rheMac2.chr2 295641 264 + 189746636 TCTACAAAGTGAGTTTAGGCAGTGAAAGGGCAC---ATG---TCATATATAGTTTACCAGAAAGTAGTACTGGTCACCAGCGTAGAA-GCATACTCCTAACCCTGGAAAA-TTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGTATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGA----------------------------------ACTGTATA-----------------ATATCAA--------------------------------------------------ATCTAAAATAAGCCAAGAGAGTTGGACAATTTTTCATCTCTCAGAAA-A- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3617091 264 + 6711082 TCTACAAAGTGAGTTTAGGCAGTGAAAGGGCAC---ATG---TCATCTATAGTTTACCAGAAAGTAGTACCGGTCAGCAGCGTTGAA-GCGTACTCCTAACCCTGGAAAA-TTTCTTCAGCAGCCAGAATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGTATGTGTTCATTCAGATTAGTAAATCTCCATGGTGTTCGA----------------------------------ACTGTATA-----------------ATATCAA--------------------------------------------------ATCTAAAATAAGTCAAGAGAGTTGGACAATATCTCATCTCTGAGAAA-A- i panTro2.chr4_random C 0 C 0 s equCab2.chr26 28507836 265 - 41866177 TTTCTAAAGTGAGTTTAGCCAGTGAAAGGGTAC---ATGGCATCATCTATAGTTTACCAGAA---AGTGCCAATTATCAACCTTGAATACGTATCTCTAACTATGGGATA-TTTCTCCAGCTGCCAGGAGTTATTTCCAATTTTGAGGTTGGAACAAGGGCTAATTTGCTATGTGCTCATCCATAATGATAAAGCTACTTGGCATTTGA----------------------------------ACTGTATA-----------------ATATCAA--------------------------------------------------ATCTAGAATAGTCCAAAAGAGTTGAATACTTTCTGCTCTCTCAAGAAT-- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28156529 264 - 42263495 TTTAGAAAGTGAGTTTAGGTGACAAACAGGTAT---ATGCCATCATCTGTAGTTTATTAGAA---ACTGACAATCATCAAACTTGAATGTATATCCCTAACCATGTAACA-ATTCTCCAGCTGCCAGGAGTTATCCCAAATTTTGAGATTGGAACAAAGGCTAATTTGGTATATTTTCATCCATAATAATAAAGTAATTTGGCATTTCA----------------------------------ATTGTAAA-----------------AAATAAA--------------------------------------------------ATCTCGAATAGTCTAAGAGAATTGGATAATTTCTGCTCTCTCAAGAA--- i canFam2.chr31 C 0 I 237 s bosTau4.chr1 22929630 360 + 161106243 TATATAAAGTGAATGTAGGCAGTGAGAGGGCAT---ATGGCACCACCTATATTTCACTAGAA---TGTTTCAGTCATCAAGCTTGAATGTCTATCCCTAAACACGGAATATTTTCTCTAGTTGCCAGGAGTTATCCCAGATTTTGAGGTTGGATCAAGAGCTAATTTG----GTTTTTGTTCCTAATGATAAA-CTACCTGGCATTTGAATGtcatgttgaggtatggcaaaaccaatacaatattgtaaagtaattagcctccaattaaataaatttatattaaaaaaaaTGAACTAGGTTGAACTCAAAAAAAAAAAAAAGACATCTAGAGTAGTTCAAGGATGCTTGAGAATTTCTGCTCTCTCAAAA---- i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41945856 245 + 62548349 TTTATGAAGC-AATTTTGGCAATGTAAGGGTAG---GTA---TCATGTATAGTTTATCAGAA---AATGTCAACCACCATACTTAAT-GCATACTCCTAACCCTAGAGAA-TTTCTCCAGCTGCC----CTCACTCCAAGTTTTGAGGTTAAAACAAGGGCTGATTTGGTATGCATTCATTCATAAAGATAAATCTACTTGATGTTTGA----------------------------------ACTACATA-----------------AT-------------------------------------------------------ATCTTCGATATCCTAAGAGAGTTGGTAAATTTCTAAGCTCTC-------- i loxAfr3.scaffold_13 C 0 I 575 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e cavPor3.scaffold_34 8634509 1396 + 24440124 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=238200.000000 s hg19.chr4_gl000194_random 178993 245 + 191469 AAATGCATTATTTTCAAGAGATTTAAGACTGAATT----TAAAATCC-----------------------------------AACTGCCTATTCCAGTGTATGTTTCTCTAGAATATGGCCAA--GCCCTACAAATTCTGGATAGTGTCCTCCAAGTT-GTGTTTAAGTGATAATTGATAAATCTATGGTTTAGATACATATGGAATTCCACAT--AACTCTAGCTCCA------GCCTTTGCGAGTAAAAAT---TG---GCAGTGATC----ATGGCCTTAATGGAGGCATGTGGTTAATTGG s panTro2.chr4_random 3617355 245 + 6711082 AAATGCATTATTTTCAACAGATTTAAGGCTGAATT----TAAAATCC-----------------------------------AACTGCCTATTCCCGTGTATGTTTCTCTAGAATAAGGCCAA--GCCCTACAAATTCTGGATAGTGTCCTCCAAGTT-GTGTTTAAGTGATAATTGATAAATCTATGGTTTAGACACATATGGAATTCCACAT--AACTCTAGCTCCA------GCCTTTGTGAGTAAAAAT---TG---GCAGTGATC----ATGGCCTTAATGGAGGCATGTGGTTAATTGG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 295905 245 + 189746636 AAATGCATCATTTTCAAGAGATTTAAGATTGAATT----TAAAATCC-----------------------------------AACTGCCTATTCCAGTGGATGTTTCTCCAGAATAAGGCCAA--GCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTGTTTAAGTGATAATTGACAGATCTATGGTTTAGATACATATGGAATTCCATAT--AACTCTAGCTCCA------GTCTTTGCAAGTAAAAAT---TG---GCAGTAATC----GTGGCCTTAGTGGAGGTATGTGGCTAATTGG i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22010253 271 - 163896628 ATATTCAGTATTTCCAAGACA-TTAAGAGTGGACC----TAAAACCC-AGAATACTAAATTAAGGCTTCAGGGAGGTCTTATAACTGCCTATCACAACGGAAGTTCCTCCAGAA---GATCAA--ATATTTGAAGTCCTAGATAGTGTGCT--AAGTT-ATCTTCAAGTGAGAGTTGGTATATATATTATTTAAATACATAAGAAATCCCACAT--AACTGTATCT---------GCCTTTGTGAATAAAAATAGATG---GCAGTAATG----ATGTTTGTAATG--GGCATGTGGATAATTGG i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22929990 267 + 161106243 ATGTATCTCATTTCCAAGATATTTCACAGTGAGCTATCTTAAAAATCTCAAACAGTAAATTGAGTCTCCAAGGTGGCCTTAGAACTACCTATCTCAATGGAAGCGTCTCCAGAA---AAAGAACCGTCTTTCACTCTTTAGATGATAT--------------------------TTGGTAAATTTCTGGTTTAAATATGCATGGCATTCCACATCAGTTTCTCTCTCTAACACATGCCTTTGTGAGTAAAACA---TGAT-GCAGGAATG----GTGGCCTGCAAGG-GGCAAGTGGCTCATTAG i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28508101 287 - 41866177 --GTGTATCATTTCCAAGAGATTTAAGAGTGAATTGCCCCCAAACCA-AAAACAGTAAGTTAAATCTCCAGAGGTGCTTTAGAATGGCCTATCTCAATGGAAGCTTCTCTAGAA---GCTCAA--ATCTTTCAACCTCTAGACAGTGTCTTCCAAGTT-GGCTTTACATAATAATCGGTAAATCTCTTGTTTAAATACACACGGGATTCCTCATCACACTCTCTCTTTCCCATCTGCCTTTGTGAGTAAAAAT---TGATTGCAGCAATG----CTGGCTTTCATGG-GGC-AGTGGCTAATTAG i equCab2.chr26 C 0 C 0 s canFam2.chr31 28157030 282 - 42263495 aTGTGTATCATTTTCAAGATATTTAAGAGTAAACTGCCTTAAATGTC-AAAATCATAA---CAGTCTCCAGAGGGGCCT-------GCTTATCTTAGTGGAAGCTTCTATAGAA---GGCCAA--ACTTTTCAACCTCTAGATAGTATAATCTAAGTC-AGCTTTAAGTAAGAATTGGTGAATCTCTGGTTTTAATACCCATGAGATTCCACAT--CAGTCTTTATCTACCACTTGCCTTTTTGAGTAAAAAT---TGGTGGCAACAATGATGACTGACCTTCATGA-GACAAGTGGCTAACTAG i canFam2.chr31 I 237 C 0 s loxAfr3.scaffold_13 41946676 285 + 62548349 ATGTGCACCCTTTCCAA-AGATTTAAAAGTGAACTGTCTTAAAACCG--AAATATCAAATTTACACTCTAGCTAGGACTTAGAATTTCCTATCTCATGGGAAGTTTCTACAGAAGGATGTAAA--ATCTTTCACACCTGAGAGAGTGCCCTTCAAGTTGGTTTTTGGGTGATAATTGCTGAATCTCTTGGTTAAATACATAGGTGATTCCACAT--AATTCTATATCTAAA----AACTTTGTGAGCAAAAAT---TGGTGGCAATTATT----TTGGCCTTAATG--GGCATATGGATAGTTAG i loxAfr3.scaffold_13 I 575 C 0 e rn4.chr11 73457370 4532 - 87759784 I e mm9.chr16 22818965 3812 - 98319150 I e cavPor3.scaffold_34 8634509 1396 + 24440124 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=14472.000000 s hg19.chr4_gl000194_random 179238 56 + 191469 AATTTTCAGTACCAAAAGTCTTCTTCTTACTAGTTTATCAGGGTA-CCCTATAATAG s panTro2.chr4_random 3617600 56 + 6711082 AATTTTCAGTACCAAAAGTCTTCTTCCTACTAGTTTACCAGGGTA-CCCTATAATAG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 296150 48 + 189746636 AATTTTCAGTACCAAAAGTCTTCGT--------GTTATCAGGGTA-CCCTGTAATGG i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8635905 44 + 24440124 AGTTTTTAGTAGCAAAGCTA--------CTCTGGTTTCTAGGCTT-TTAAGGG---- i cavPor3.scaffold_34 I 1396 C 0 s mm9.chr16 22822777 19 - 98319150 ---------------------------------gTTATTAGAGTA-TTCAATA---- i mm9.chr16 I 3812 C 0 s rn4.chr11 73461902 32 - 87759784 --------------------TCCTTATTGTTATGTTATTGGAGTA-TCCGATA---- i rn4.chr11 I 4532 C 0 s oryCun2.chr14 22010524 40 - 163896628 AAGTTTTAATATCTGTGGTC--------TCCTTGTTACTAGGTTA-TAT-------- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22930257 57 + 161106243 ATTTTTTAGTATCAAAAGTCCTTTCATTACTAGAATATCTGTATAGTCTTATAACAg i bosTau4.chr1 C 0 I 13390 s equCab2.chr26 28508388 57 - 41866177 GCTTGTTAGCACCAAAGGTGGTCTTGTTATCAGGTTAACACGGTAGTCTTATAATAA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28157312 57 - 42263495 GCTTTTTAGTACCAAAGCCCCTATTGGTACCAGGTTACCAGGGTACTCTTACCACAG i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41946961 53 + 62548349 AAATTTTAGAACCAAAGATTCTCTTGTTATTAGATTATCAGGATA-TCCTACAG--- i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=1208261.000000 s hg19.chr4_gl000194_random 179294 768 + 191469 TATCCATAACTCATTGCCCACTTGTCTGTTT-----TGATTTCTTTTTTAA---AAATACAATT----TTAAACTT-----------AGAGGTTTTGTA-CCTCAAGTCACATATGTG-------------------------GCACATTTATAA------AATAATCATGCCTTTGCAT---------------------------AT-TTTTCCT-----------TTGATATCTTA-----------------------------------------------GCTGT-------ATAT-----------------------------------------------ACAAGCCACTTATG---TTTTTT-----AATTGCCACAAATATTGCACTGAAATAGAGCACTAGTTGCAAAAATGCCT--------------------GGTATAACATTTCTT--CTTGT---TCTTGAAAGTAATTTTAATACCCCATGTTTAAGATATTCCTAGAC-AACTATAAGTAACTATAATTATTTCT---GCTAGGTAGAAGCATCTTTGTGGTCAACATTTGTGAAGTGCCTTGTAAATAAAAATATGCTTGAGTAGAAATAGTATTTTGC------AAATATAGCCCTAAATAGAGCTACTGATTTTACCAAGAATTAAAGACTCCAAACTCTGTCTTTGTCTTTCAAATTTGGTTTATAGGAACATC---TCATTACAATGAGCAAAAAGCCTATCTGATCATTAAAGAG-ATAATTTTGACACTTTCAAATGAC----------ACAGCTAA---TTTGTAGTAGGTTTTTGAAGTGCAAA-TTACAGGTTTCTGTTTAAATAATGACAGTAAAATATGGACAGTATCTATTCACACTCTATATACACAACTA----CAACTTGTCCCTAGAAGAAAAGTTT-AATTTTTCAGGTCTCATCCAC-AAAA-CGAAGTGTTAATAAGCTGTATCTTTATTCTCACTTTTAAGTAATTTCTTCTT-AACCATTG s panTro2.chr4_random 3617656 771 + 6711082 TATCCATAACTTATTGCCCACTTGTCTGTTT-----TGATTTCTTTTTTAA---AAAGACAATT----TTAAACTT-----------AGAGGTTTTGTA-CCTCAAGTCACATATGTG-------------------------GCACATTTATAA------AATAATCATGCCTTTGCAT---------------------------AT-TTTTCCT-----------TTGATATCTTA-----------------------------------------------GCTGT-------GAAT-----------------------------------------------CCAAGTCATTTATG----TTTTT-----AATTGCCACAAATATTGCACTGAAATAGAGCACTAGTTGCAAAAATGCCT--------------------GGTATAACATTTCTT--CTTGT---TCTTGAAAGTTATTTTAATACCCTATGTTTAAGATATTCCTAGAC-AACTATATGTAACTATAATTATTTCT---GTTAGGTAGAAACATCTTTGTGGTCAACATTTGTGAAGGGCCTTGCAAATAATAATATGCTTGAGTAGAAATAGTATTTTGC------AAATATAGCCCTAAATAGAGCTACTGATTTTACCAAGTACTAAAGACTCCAAACTCTGTCTTTGTCTTTCAAATTTGGTTTATAGGAACATC---TCATTACAATAAGCAAAAAGCCTATCTGATCATTAATGAG-ATAATTTTGACACTTCCAAATGAC----------ACAGCTAA---TTTGTAGTAGGTTTTTGAAGTGCAAA-TTACATGTTTCTGTTTAAATAATGACCGTAAAATATAGACACTATGTATTCACACTCTATATACACAACTAACTCCAACTTGTCTCTAGAAGAAAAGTTT-AATTTTTCGGGTCTCATCCAC-AAAA-TTAAGTGTTAATAAGCTGTATCTTTATTCTCACTTGGAAGTAATTTCTTCTT-AACCATTG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 296198 771 + 189746636 TATCCATAACTCATTGCCCACTTGTCCGTTT-----TGATTTCTTTTTTAA---AAAGACAATT----TTAAACTT-----------AGAGGTTTTGTA-CCTCAATTCACATACGTG-------------------------GCACATTTATAA------AATAATCATGCCTTTGCAT---------------------------AG-TTTTCCT-----------TTGATATCTTA-----------------------------------------------ACTAT-------ATAT-----------------------------------------------CCAAGCCATTTATG---TTTTTC-----AATTGCCACAAATATCGCACCCAAATAGAGCATTAGGTACAAAAATGCCT--------------------GGCACAACATTTCTT--CTTGT---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGAC-AATTAGATGTAACTATAATTATTTCT---GCTAGGTAGAGACATTTTTGTGGTCAACATTTGTGAAGTGCTTTGTAAATAAAAACATGCTTGAGTAGAAACAGTATTTTGG------AAACAGAGCCCTAAATAGAGCTACTGATTTTTCCAAGAATTAAAGACTCCAAACTCTGTCTTTGTCTTCTAACTTTGGTTTATAGGAACATC---TCATTACAATGAACCAAAAGCTTATTTGATCAGTAATGAG-GTAATTTTGACACTTCCAAATGAC-----------CAGCTAA---TTTGTAATAGATTTTTGAAGTGCAAA-TTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTATATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGATTT-AATTTTTCAGGTCTCATCCACAAAAA-TGAAGTGTTAATAAGCTGCATCTTTATTCTCACTTTTAAGTGATTTCTTTTT-AACCATTG i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8635949 762 + 24440124 TACCTAT--CCTAAAACATA---GCCCATTT----ATCATTTTATTTTTAA-----AGAAAAT-----TTTAAACT-----------TAGAATTCTGTA-CTTTGA-TC-TATATAAGC-------------TATG----------CATTTATAA------AAGAATCATGCTTTTACAT---------------------------AT-TTCACTTTTGATATCATAATGATATCCAA-----------------------------------------------ACCATATATATGAAAC-----------------------------------------------AA----------------TTTTT-----AATTATCAAAAAA---GTACTCATATATAGCACTAGATAAAGAAATGCCT--------------------AATACAAAATTTATT--CTTGTCACCCTTGAAAATTCTTTCAAT-TCACAT--TTAATTTGTTCTTGGAT-AATTGTTTAAAACTACAATTATTATTCTTGATAGTTAGAAATATTCACATGGTTAACATCTATCAAATGCAGTGTAAACAAAAATACAATAAAGTGG-AAGGAC----CCT----ACAAATATT-----------AACTGTCAATTTTTCCCAGAATCAAATATTCACAAATCTATCTTTAGTTTTCAAATTCATTTCATAGAAACATC---TCATTTTAATGAATCAAAGACTTGTTTGATCATTAATGAG-GTCATTTTAAAACTTCCAAATAACAGTTTATAGAACAGCACA---TTTGTAGAGGAA-TTTGAACTACAAATTTTCACATTTCTGCTTAAATAATTAGAATAAAATATGGACATAATCAACTTATGCTCCAAGTATACAACTAACTCCACTTTGTCCCTAA----AAGATTT-GATTTTGGAGGTCTCATTCAT-AAAA-TGAGTTTCTAATAAGTTACATCTTTATTTTCACTTTTAAGTGCTTCCTTTTA-AATTGTAG i cavPor3.scaffold_34 C 0 C 0 s mm9.chr16 22822796 733 - 98319150 CACTCAT----TGGAACCT-----TCTATTT-----TTTCTTTAATTTTAA-TCTTAGAAAATTCATGTCTCAGTT-----------GACAACAATGT--------------CACAAG-----------------------------ATTAATAA--------TAATTATGCCTTTGCAC---------------------------AT-TTTCATC-----AATAGATTGATAATTAA-----------------------------------------------ACAAT-------GAAT-----------------------------------------------AC----------------ATTTT-----AATTATCATAAAA--------------------CAAATCATGAAATGCCT--------------------AATGTA-----TATT--TTTGTGCCCCTTAAAAATTCTCTCCCC-TAACAGGCTGCATGAATCCCTGAGT-AATTGTATATAATTTTAATGATGACTCTAATTAGCTCAAAACATTTTGGTGGTGAACACTTATGAAGTACATTGTAAATGAAAATAAACTTCAGCAGTAATGGC----TTTTAAAAAAAATATTTTCCTAATTAGAATTGCTGATTTTTCTAAGAATTGAAGGTCCCCGTTT--GTCTTTCCCTTTCAATTTTGGTTCACAGAAACATC---TTATCATAAAGAGTCAAAGGC-TATTTGATCATTAATGAG-GTCACTTTCACACTTCTAAATAATTGCACGCGACACAGATGATTCTTTTTAATAAGA-TTTGAGGTGCAAA-TTACATACCTCTGTTTAAGTCATTAGAGTAAAATATGGACACTATCAATTCACACTCCTCAAAAACAACTAACTCCACTTTGGCCCTATAAT-AAGGCTT-AATGTTTCAGGTCTCATGTGG-AAAA-TGAGGTGTTAGTAAGTTGCAGATTTATTTTCACTTTTAAATCCTTCTGTTTT-AAGTTTAA i mm9.chr16 C 0 C 0 s rn4.chr11 73461934 710 - 87759784 CACTCAT----TGGAAACT-----TCtattt---tattttttaaattttaa-----------------tCTCAATT-----------GATGAAAATGT--------------CAGAAG-----------------------------ATTGCTAA---------AATTATGCCTTTGCAT---------------------------AT-TTTCATC---------GATTGATAATTA--------------------------------------------------AAT-------GAGT-----------------------------------------------AC----------------TTTTT-----AATTATCATAAAA--------------------AAGACCAAGAAATGCCT--------------------CATGTA-----TATT--TGAGTGTCCTTTGAAAATTCTCTCAAC-TGACATGCTGCATGTATCCTTGAGT-AATTGTGCATGATTCCAGTGATGATTCTTATTAGCTCACAATATTTCCATGGTACAT-----TGAAGTACACTGCAAATGAAAATAAACTTCAGCAACAATGGCTTTTTTTTTGCAAAACTATTTTCCTGATTAGAATTGCTGATTTTTCTAAGAATAGAAGGTCCCTGTATCCATCATTCTCTTTCAATTTTGGTTCCCAG-AACATC---TTACCATAAAGAGTCAAAGGC-TATTTGATCATTAATGAG-GTCACTTTCACACTTCTAAATAATTGCATGTGACACCCCTGA---TTTTTAATAAGA-TTTGAGGTGCAAA-TTACACACCTCTGTTTAAGTCATTAGAGTAAAATATGGACACTATCAATTCACACTCCTCAAAAACAACTGACTCCACTCTGTCCCTATAATGAAGGCTT-AATATTTCAGGTCCCGTGTAG-AAAA-CAAGGTGTTGATAAGCTGTGTATTTCTTTTCACTTTTAAGTCCTTCCGTTTTGAAGTGTAG i rn4.chr11 C 0 C 0 s oryCun2.chr14 22010564 796 - 163896628 --CTCATAACCCAAGGCCCACTTGTCTATTTCAATACCTTTTGTTCTTTCA------GACAATG----TTAAAGTT-----------AGAGGTTGTGTG-CCTTCT-TCATATAGATGCCGATCTATTCAGATATGCCTATCTTCACATAGATAGTATGTTGATAATTATTTCTGTGTAT---------------------------AT-TTTTCAT-----------TTGTTAACTTG-----------------------------------------------A-TAT-------GAAT-----------------------------------------------CC-----ATTCATG----TTTTT-----CATGGTCAAAAATG--GTGTCCAAATATAGCAGTAGGTCAGGAAATGTCT--------------------AATATA-----AATTCACTGGTAACCCTTGAAAATTATTTCAAT-CCGTATGTTTAATATCTCCCTGAAT-AGTTGTGTATAACTGCAATTATTACT---GCTATGTGGAAACATTGATTTGGCTAATATATAAAAGGTACATAGTAAATACAAGTAGGCTTGCATAGAAATCGTATTCTTC------AAATATTGTCT-------AATTAGC-ATTTTCCCAAGGATTGAAGTTCCCTAAATCTCTGTTTATTTTTCCATTTAGCTTCATAGGAACATTTTATTATTATAATGAGTCAAAGACCTATTTGATTATTAATGAT-ATAA-TTTAACACTTCCAGATAAATATTTGTGACACAATTAA---TTTGTAATGGGATTTTGAAGTGCAAA-TTACCTGTTTTTCTTTAACTAATTAGAGTGAAATATGTACACTACCAATTCACACTCCATTTACACAACCAACTCCAATTTGTTCATAGCAA-AAGATTT-AATTTTGCAGGTCTCATGCAA-AAAATTGACGTGTTAATAAACTATATCTTTATTCTCACTTTTAAGTGATTTGTTTTT-AATTAGGA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 138168417 852 - 161106243 TAAACATAATCTGTTGCACACTTGTCTATTT-----TGATTCCTTTTTGTA-----AGTTAATT----CTAAATGT-----------AGAAGTTTTATGCCCTTGGTTCACACACACG-------------------------GCTTATTTAT---------AAAATCATGC-TTtgaattggaggatcatatggcaacccactccagtattcttgc-----------ctggaaaatcccacggacagaggagcctgatgggctacagtccattgggttgcaaaaagtcag-------acatgactaagagactaaacaacaacaacATCTTTTTTGAAAATGTAGCTATCAAGCTATTCATG----GTTTT-----TTTGGTCAGAAAA---ATAATCAAATATATCTCTAGGTCAAGAAATGCTT--------------------GATATAACTTTTATT--CTTGTGACCCTTTA--------TCAAT-CTATG-------TTTATTTCTGAAT-ACTTGTAA------ATAATAGTTATTTCTACTAGTCAG--ACACGTGCGTGGTTAACATTTA-AAAGTGCATTGTAAATGGAAATATACTTAAGTAGAAACAGTATTCTGC------AAATATTGCCCTAATTAGAACTGCTGATTTTCCAA-GGATTGGAGATCCT-AGGTCTGTTGTTTTCTTTCAATTTTGGATTATAGGAA--------CATTATAATGAGCTAAGGGCCTGCTGGATAATG-------ATAATATTAATGCTTCTGAATAACTGCTTAGGACACAGCTAA---TTTGGAATAGGATTTTGAAATGAAAA-TTGTGTATTTCTCTTTAAATAATTGGAGTAAAATATGGACAGTATCCACTTA-----------CGCAACTAACTTAAATCTGTCTCTAGAAGAAAGCTTT-AATTTTGCAGGTCTAGTCCAC-AAAA-CAAAGTGTTAACTAGCTTCATATTTATTCTCATTTTTAATTAACTTATTTTT-AATCATAG i bosTau4.chr1 n 13390 C 0 s equCab2.chr26 28508445 788 - 41866177 TATCCATAGCCTGCTGTCCACTTGTCTATTT-----TGA----TTCCTTTA-----AGGAAATT----TTAAATGTCTTATGTTTTTGATTTTCTTATGTTCTTGGTTCACACATATG-------------------------GCTTATTTATAA------AATAATCATTCTTTTGAAT---------------------------ATTTTTTCCT-----------GTGATAGCTTC-----------------------------------------------ACTAG-------ATAT-----------------------------------------------CCAAGCTATTCATG----TTTTTAAAAAAATTGTCAG-ATG---ATACCCAAATATAGCACTATATCAAGAAATGCCT---------------------GTATGAAATTTATT--CTTGTGATCCTTAAA--TTCTTTCAAT-CTACATGTTTCATCTATCCCTGGATAAATGGTACATAAGTATGATGGCGATTCCTGTTAGCCAGAAACATTTGTGTGGTCAACATTTATAAAATGCATTATGAATGAAAATATGCTTGAGTAGAAAGAGTTCTCTGT------AAATATTGTCCTAATTACAAGTGCTCATTTTCCGACGGATTGAAGATCTCTAAATCTGTCTATAACTTTCAACTTTGGATCATAGGAATATC---TCATTATAATGATCCTAGGGTCTATTTGATAATT----ATAATAATTTTAACACATGCGAGTAACTGTTTAGGATGCAGCTAA---TTTGTAATAGGCTCTTAAAGTGAAAA-TCACATATTTTTCTTT-AATAATCAGAGTAAAATATGGACGCTATCAATTTACACTCCATATTCACAATGAACTTCAACGTGTCCCTAGAAGAAAGGTTT-AATTTTGCAGGTCTAATCCAC-AAAA-TGAGGTGTTAATAAGCTACATCTTTATTCTCACTTTTAAGTGATTTCTTTTT-AATCATGG i equCab2.chr26 C 0 C 0 s canFam2.chr31 28157369 780 - 42263495 TGCCCATAATTGGGTGTCCAATTATTTCTCT------------TTTTTAAA-----AGACAATT----TTAAATGT------------AGGGTTTTATGGTTTTGATTTATACATATG-------------------------GCTTATTCAT---------ATATTCATGCCTTTGAAT---------------------------GTGTTTTTCT-----------TTGTTAACT---------------------------------------------------TAG-------ATAT-----------------------------------------------TCATGGTATTCATG----TTTTTTTTTTTTTGGTCAGAAAA---ATAACCAAATATACTACTGTATCAAGAAATGACTAAAAGAAAAAAGAAATGCTGGATATAATATTTATT--CTTACAACCCTTGAA--TTATTTCAAT-CCATGTATTTAATTCACCCCCAGGT-AATTGTATGTAATTATAATGGCTGTT-TTGATAGCCAGAAACATTTGTGTGGTTAACACTGATAAAGTGTTTTGCAAATAAAAACATGTTTGAGTAGAAATAGTATTCTAC------AGAAATTTCCCTTATTAGAATTG---ATTTTCCAAAGGATTCAGATTCCC---AGCTGTCTGTATCATTCAGCTTTGGATCATAGGAACATT---TCGTTAAAATGAGCCAAGGGCCTATTTGATAATTAATAAGAATAATTTTAACACTTAAAAATAACTGTTTAGGACATAGCTAA---TTTGTAATATGGCTTTGAAGTGCAAA-TTACACATTTCTCTT----TAAGTAGAGGAAAATATGGACACTGTCAATTTACACTCCATATACACAACTAACTTCATCTTGTTCCT--AAGAAAGGTTTAAATTTTGCAGGTCCAATTCAC-AAAA-TAAACTGCTAATAAGCTACATCTTTATTCCCATTTTAAAATGCTTTCTTTTT-AATCATAG i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41947014 774 + 62548349 TACTCATAACCCCTTTCCTGCTTGTCTATTT-----TGATTCATATTTTTGCTTTAAAGCAATT----TTAAACTT-----------AGAGATTTTATGCTCTTGATTCAATCATGTG-------------------------ACTCACTTATAA------AATAATAATGCCTTTATAT---------------------------AT-AGCTCCT-----------CTGAAAGCTTA--------------------------------------------------AG-------ATAT-----------------------------------------------TAAAGCCATTCATTTTTTTTTTT-----AATTTTCAGGAAAATTGTATCCAAATATAGCACTAGACCAA-AAATGCCT-------------------------------GATT--CTTGTGACCTTTGAAAATTTCTTTAAT-CTACACACTTAACTTATCCCTGAGT-AATTATATATAACCTTAAGGGCTATTCCTGCTAGTCCAAAACACTAGTGTGATTAGAATATA-CAAATGCAATGTAAATGAAAATATGTTTGAGTAAAAGTACTATAATTC------AAATATTGCTCTAATTAGAACTGCCTATTT--CCAAGGATTGAAGATCTCTAAACCTATGTTTATCTTTCAACTTATGTTCATAGGAGGATC---TCATTATAATGAGAGAAGGGCCTTTTTGATCATTAATGAG-GTCATTTTAACA-GTCCAAGTAACTGCTTAGGACACAGTTAA---TTTGTAGTAGGATTTTGAAGTGCAAA-TTACATGTTTCTGTTTAAATAATTAGAGTAAAATATAGACACTATCAATTCACACGCTATATATACAACCAACATCAATTTGTCCCAAAAAG-AAGGTTT-AATTTTGCGGGTCTCATCCAC-AAAA-TGAGGTGCGAATGAGCTACATCTTTATTCTCTCTTTTAAGTGATTTATTTTT-AATCATAG i loxAfr3.scaffold_13 C 0 I 526 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=53993.000000 s hg19.chr4_gl000194_random 180062 36 + 191469 TATAACACTACCACAGTTTGTATGGAGATAAAATAA--- s panTro2.chr4_random 3618427 36 + 6711082 TATAACACTGCTACAGTTTGTACGGAGATAAAATAA--- i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 296969 36 + 189746636 TATAACACTACTACAGTTTGTATGGGGATAAAATAA--- i rheMac2.chr2 C 0 C 0 s cavPor3.scaffold_34 8636711 28 + 24440124 T--TGGAAAACTGCAGTAT------AAATGAAAACA--- i cavPor3.scaffold_34 C 0 I 515 s mm9.chr16 22823529 36 - 98319150 TATAGCACTACTACATTTTGTTTGGAAATGAAACCA--- i mm9.chr16 C 0 I 5 s rn4.chr11 73462644 36 - 87759784 TACGGTGATACTACGTTTTGTTTGGAAATGAAACCA--- i rn4.chr11 C 0 I 5 s oryCun2.chr14 22011360 36 - 163896628 TACAACACTACCACAGTTTGCATGGAAATAAAAACA--- i oryCun2.chr14 C 0 I 3 s bosTau4.chr1 138169269 31 - 161106243 TACAGCATCACTACCATTTGTATGGAAACAA-------- i bosTau4.chr1 C 0 I 3 s equCab2.chr26 28509233 35 - 41866177 CACAACGGTACTACAGTTTGTATGGAAA-GAAAACA--- i equCab2.chr26 C 0 I 3 s canFam2.chr31 28158149 36 - 42263495 AACAATAGTACAACAGTTTGAATGGAAATAAAAACC--- i canFam2.chr31 C 0 I 3 s loxAfr3.scaffold_13 41948314 39 + 62548349 TATAACACAACTACAGTTTGTGTTGAAATAAAAACATAT i loxAfr3.scaffold_13 I 526 C 0 s proCap1.scaffold_76270 5653 29 - 11548 TATAACAGAAATACCACAAGTG----------GATGAAT i proCap1.scaffold_76270 N 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=62593.000000 s hg19.chr4_gl000194_random 180098 58 + 191469 CTCATGGTGAGAAATCCAGTTCTTTAAA-AAATCATTTTACCTTCAATCA--CTTTTAGGA s panTro2.chr4_random 3618463 59 + 6711082 CTCAAGGTGAGAAATCCAGTTATTTAAAGAAATCATTTTACCTTCAATCA--CTTTTAGGA i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 297005 59 + 189746636 CTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGGA i rheMac2.chr2 C 0 C 0 s rn4.chr11 73462685 55 - 87759784 --CACATAGGAAA--AGAGTACCTCAAGGAGATCGCTATAACTTCAATCA--TATTCAATA i rn4.chr11 I 5 C 0 s mm9.chr16 22823570 55 - 98319150 --CACATAGGGAA--AGTGTACCTCATGGAGAACATTATAACTTCAATCA--TATTCAATA i mm9.chr16 I 5 C 0 s cavPor3.scaffold_34 8637254 53 + 24440124 --CATACCAAGAA--ATAGTTCCTGAAACAGGTCTTTTAACCTTTATT----TATTCAAAA i cavPor3.scaffold_34 I 515 C 0 s oryCun2.chr14 22011399 57 - 163896628 --CACAGGGAGAAACAGAGTTTCTTAAGGAGATCATTTTACCTCTGGTCA--TATTCAGAG i oryCun2.chr14 I 3 C 0 s bosTau4.chr1 138169303 43 - 161106243 TTCAT------------GGTTCCTTAAGGGAGTAATT-TA-CTTCAGTCA--TATTCAG-- i bosTau4.chr1 I 3 C 0 s equCab2.chr26 28509271 51 - 41866177 TTCAT-------GGTCAAGTTCCTTAAGGAGATCATT-TACCTTCAGTCA--TATTCAGGA i equCab2.chr26 I 3 C 0 s canFam2.chr31 28158188 55 - 42263495 TTCACA-----AAGTCAAGTTCTTTAAGGAGATCACT-TACCTTCAGTCATCTGTTTAGGA i canFam2.chr31 I 3 C 0 s loxAfr3.scaffold_13 41948353 52 + 62548349 TTCAC-------GGTCATGTTCTTTAAGGAAACCATTTTACCTTCAGTCA--TATTCAGGA i loxAfr3.scaffold_13 C 0 C 0 s proCap1.scaffold_76270 5682 35 - 11548 TTAAC------------------------AAAGAATAATGCATTCTTTCA--CTTCTTAGA i proCap1.scaffold_76270 C 0 I 5460 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=104992.000000 s hg19.chr4_gl000194_random 180156 54 + 191469 TGTCTATGGTTT---TAGAGTAAGGACGAAAATTTATAAACATT----------------------------------------------------------TGTTAAATTATGC s panTro2.chr4_random 3618522 54 + 6711082 TATCTATGGTTT---TAGAGTAAGGATGAAAATTTATAAACATT----------------------------------------------------------TGTTAAATTATGC i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 297064 54 + 189746636 CATCTATGCTTT---TAGAGTAAGGATGAAAATTTATAAACATT----------------------------------------------------------TGTTAAATTATGC i rheMac2.chr2 C 0 C 0 s rn4.chr11 73462740 54 - 87759784 AATGTGGACTTT---CAGAGTAGGGAGAAAACCTCCCAATCACT----------------------------------------------------------TATTAAGACATGC i rn4.chr11 C 0 I 1619 s mm9.chr16 22823625 54 - 98319150 AATTTGTGCTTT---CAAAGTAGGGACAGAAACTCACAATCACT----------------------------------------------------------TATCAAACCATGC i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8637307 112 + 24440124 TAACTATGCATC---TATAGTTAAGATAAAAATTCACAAACGTTGAAGCTCCAGGGGTGCGGTTGATTAGCATGCGATACTTACACAGAAATTCACAAGCACTGTTAAACCAGAC i cavPor3.scaffold_34 C 0 I 1 s oryCun2.chr14 22011456 54 - 163896628 TATCTATGCTTT---TACAGTAAAGACTTGAATTCATGAATATT----------------------------------------------------------TGTTAAATTATGC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 138169346 51 - 161106243 ------TACTTTATAGACAGTAGTGACAGGAATTCATAGCCATT----------------------------------------------------------AATTACATTACAC i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28509322 54 - 41866177 TACATATGCTCT---TACAGTGGGGACAGGAATTCATAAACACT----------------------------------------------------------TGTTAAATTATGC i equCab2.chr26 C 0 C 0 s canFam2.chr31 28158243 54 - 42263495 TATATATACTTT---TACAGTAGGGACAGTAATTCATAAACATT----------------------------------------------------------TGTTAAATTATGT i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41948405 53 + 62548349 TATATATGCTTT---TATAATAGGGGCAGATATTCATAAACGCT----------------------------------------------------------GGCCAAATTATA- i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=582000.000000 s hg19.chr4_gl000194_random 180210 274 + 191469 AACTGTGTTTGAAGA--TGTTTCA-AAATTACA----TTTTCCTTA-TTTTACAACTAGTTT---TCATGTATTCACAAACGAG-----ACACAT--------------GAGAATTATTAATGCAAAAGCACA--GCATATCAACAAAG--------TTTATAA--TGTAAATAGTTTAGTTAGG--AAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCTAGATTTACCATAGAAGAAAATAAAGCAGCCTTTTAAAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTGTATTGTATGC-CGTAAGT s panTro2.chr4_random 3618576 272 + 6711082 AACTGTTTTTGAAGA--TGTTTCA-AAATTACA----TTTTCCTTA-TTTTACAACTAGTTT---TCATGTATTCACAAATGAG-----ACACAT--------------GAGAATTATTAATGCAAAAGCATA--GCATATCAACAAAA--------TTTATAA--TGTAAATAGATTAGTTAGG--AAAGAATGTAATGAGTGAATTACCAAAGCTATTTTATTGGTTCCTAGATTTACCATAGAAGAAAATAAAGCACCCTTAT-AAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTAT-TTGTATGC-CGTAAGT i panTro2.chr4_random C 0 N 0 s rheMac2.chr2 297118 273 + 189746636 AACTGTTTTTGAAGA--TGTTTTG-AAATTACA----TTTTCCTTA-TTGTACAACTAGTTT---TCATGTATTCACAAATGAG-----ACACAC--------------GAGAATTATTAATG-AAAAGCATA--GCATATCGACAAAG--------TTTATAA--TGTAAATAGTTTCGTTTGG--AAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAAACAAAGCACCCTTATACAAATTTCTCAGCCC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CGTAAGT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22823679 296 - 98319150 TGCCCTCTTTGAAGT--TGTCTTC-ATAGTACGTGGATGTCCCTCA-TTACACAGCAGTTTTCACTCAAGTATTGTAAAATGAA-----ATAAAA--GTATTATAAATTTGCAATTATTAACAACAAAACATG--TAACATATAATATGTTAATATATGTATAA--TATAATATGTCTAGTTTGT--AAAGAATAT-----GTAAAGAATTGTGGTGATTTTATTGGGTTTTGGATTTACCATAGAAG-AAATAAAACTCCATTATGAGAACTTCCTAGCAT-CAAGTTCATTTAAGATCTGTTTTACATGCTCATAACT i mm9.chr16 C 0 C 0 s rn4.chr11 73464413 295 - 87759784 TGCCCTCTTAGAAGG--TGTCTTC-ACACTCTGTGTATGTCCCTCA-TTACACAGCAGTTTTCACCCAAGTATTGTAAAATGAA-----ATGAAATGTTTTTATAAATTTGCAATTATTAACAAGAAAACATA--GAACGTGGATAGTG--------TGTAGCA--TATAATATCTCCACTTTGT--AAAGGATATATTCAGTGAGCGATCATGGTGATTTTACTGCTTCTTGGACTTATCATAGAAG-AAATACGACTTCGTTATGAGAACTTCCCAGCAC-CAAGTTCATTTAGGATCTGTTTTACATGCTCATAACT i rn4.chr11 I 1619 C 0 s cavPor3.scaffold_34 8637420 275 + 24440124 AACTTCCTTTGCTCT--TATCTCT-ACATTATG----CCTCCCAAA-TAATATAGCTTGTTT---TCAGGTATT-TGAACAGAT-----ATAAGT------------TTTATAATTATTAATGCAAAAACATA--CTATATCTATAAAA--------TTTAGAC--TATAAATAATTTAATTTGA--AAGTAATATGCTTACTTTATTACCTAAACAATTTTATTTGTTCCCAGATTTATCACAGAAG-AAATAAAATACTCTTCTGAAAACTTTAAAGCAC-TAAGTCCATTTAAGGTCTAGTTTACATGTCATTACAT i cavPor3.scaffold_34 I 1 C 0 s oryCun2.chr14 22011510 270 - 163896628 AGCTATCCTT-AAGA--TGTCTTT-AAATTACA----CTTCTCTTGTTTATACAGCTAGTTT---TTATGTATTTACAACTGAG-----ATACAT--------------TCTAATTATTAATGTAGAAGAGCA--GCATATCTGTAAAG--------TTTAGAA--TATAATA--TTTATTTTGT--AAAGAACATGCTGCATGAATT-TCAAAGCAATTTGATTGGTCCCCAGATCTACCATAGAAG-AAATAAAA-ACCCTTATGAAAATTTCCCAGCAT-TAAGTCTATTGATGGCCTATTTTATATGCTCTTAAGT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 138169397 272 - 161106243 AGCCCTTCCTGAAGA--TGTCTCTAAAATTACA----TTTTCCTTA-TTACATAGCTAGTTT---TCATGTATTTACAAATGAG-----GAACAC--------------TGTAATTATTAACATAAAAGCATA--------ATATAAAG--------TTTAGAG--TACAAATAGTTTCAGTTGGACAAAGAACATAGTGAATGAATTATCAGAGCAATTTTATTGGTTCTTAGATTTACCATAGAAG-AAATAAAACACCCTTATTAAAATTTCCCAGCACTTAAGTCCATTTAAGGTCTATTTCATATGCCTTTAAGT i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28509376 272 - 41866177 AGCCATCCTTGAAGA--TGTCTCT-AAATTACA----TTTCCCTTG-TTTTACAGCTTGTCT---TCATGTATTCACAAATGAG-----ATACAT--------------TATAATTAAT---GCAAAAGCATA--GCACATCTATAAAG--------TTTAGAA--TATAAATAATTTTGCTTGG--AAAGAACATACTGAATGAATTATCAAAGCAATTTTATTGGTTCCCCAATTTACCAAAGAAG-AAATAAAACACCCTTATGAAAATTTCCCAGCACTTAAGTCTATTTAAGGTCTATTTCATATGCCCTTAAGT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28158297 273 - 42263495 AACCCTCCTTTATGA--TGTCTCC-AAATCACA----TTTCCCTTG-TTATACAGTTAGTTT---TCATGTATTCACAATTAAGACGCTATGCTT--------------TTGCATTAAT-------AATTATAATGTATGTCTATAAAA--------TTAAGAA--TATAAATAGCTTCACTTGG--AAAGAAGATACTGAATGAATTATCAAAGCAATTTTATTGGTTCCCAGATTT-TCAGAGAAG-AAATAAAATATGCTTATGAAAATTTCCCAGCAC-TAAGTCCATTTAAGGTCTATTTCACATGCCCTTAAGT i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41948458 272 + 62548349 AACCCTCCTTGAAGATCTGTCTCT-AAATCCCA----TTCCACTTT-ATATACAGCTAGTTT---TCATGTAGTCACAAAGGAG-----ACATAT--------------TATCATTATTAATGCAAAAGCACA--TCATATTAGTTAAG--------TTTACAAATTGTAAATAG----GTTTGG--GAAAAATGTACTGAATATATTATCAAAGTAATTTTATTGGTTCCTAGATTTA-CACAGAAG--AATGTAA-ACCCTCATGAAAATTTCCCAGAACTTGAGTCTACTTAAGATCTATTTCACATGCCCTTAAGT i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=244678.000000 s hg19.chr4_gl000194_random 180484 252 + 191469 TCTAAAAAATGTTA---TTGCCGGTAAAAATAGGATGCCT--------------ATCTAAA-ATTGTCTTTTTAAAGGTTCTCTCTTATTCTTCTT--CCCTT-CCTATGTGTGCACAGAATACTGTCATCGTCTTGATTG-GAACAC----TATCTCTCT--TTC---------TCAGAGGGTGTACATTTGTAGAAGGGAGAAAA-TATTTGTTAATTTTGCTTCCTATAAGATAA-GGTCTCAAT---------------------------------------------------------------------------GGTTAAAGGTT------------------------------AGTTA-ACAAAC--TTTTTTTT-TGTCTTCATACTA s panTro2.chr4_random 3127251 254 + 6711082 TCTAAAAAATGTTA---TTGCCAGTAAAAATAGGGTGCCT--------------ATCTAAA-ATTGTCTTTTTAAAGGTTCTCTCTTATTCTTCTT--CCCTT-CCTATGTGTGCACAGAATACTGTCATCGTCTTGATTG-GAACAC----TGTCTCTCT--TTC---------TCAGAGGGTATACATTTGTAGAAGGGAGAAAA-TATTTGTTAATTTTGCTTCCTATAAGATAA-GGTCTCAAT---------------------------------------------------------------------------CATTGAAGGTC------------------------------AGTTA-ACAAACATTTTTTTTT-TGTCTTCATACTA i panTro2.chr4_random N 0 C 0 s rheMac2.chr2 297391 266 + 189746636 TCTAAAAAATGTTA---TTGCTGATAAAAATAGAGTGCCTGATAATAAAACACAACCTAAA-ATTGTCTTTTTAAAGATTCTCTCTTCTTCTTCTT--CCCTT-CCTATGTGCGCACAGAATATTGTAATCGTCTTGACTG-CAACAC----CGTCTCTCT--GTC---------TCAGAGGGTGTACGGTTGTAGAAGGGAGAAAA-TATTTGTTAATTTTGCTTCCTATAAGGTAA-GGTCTCAAT---------------------------------------------------------------------------GGTTGAAGGTC------------------------------AGTTA-ACAAAC--TTTTTGTT-TGTCTTCATACTA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22823975 228 - 98319150 TCT-TCAAATGTTA---ACACCAGTTAAAA--GAGAAATC---------------GATAAT-AAGGTACTCT-------GCTCTCATTTTCTTCTT--TCCTT-CTTGTGTGCACCCTGAACCATACCCCTAGTTTTCTTC-AAACACTCTTTATCCCATA--GAC----------TAGAAACTCTACTGGAGTGGA----GGGAGA-TGTTTAT---TTTTATTGTCTACAATCTAA-GGTCTCAAT---------------------------------------------------------------------------AGTTGAAGTTC------------------------------ACTCA-GCAGAC--TTTTCATT-TATC--------- i mm9.chr16 C 0 I 205 s rn4.chr11 73464708 232 - 87759784 TCT-ACAAAGGTTAATGATACCAGGAAGAA--GAGCAATT---------------GATAAT-AAGCTCTTCT-------GCACTCATT---TCCTT--TCCTT-CATGTGTGTGCCCTGAACAGTACCTAT-GTCCTTTTC-AAACACCC--TATCCCATA--GAC----------AGGGAACTGTACAGTAATGGA----GGGAGA-TGTTTA----TTTTATTGTCTACAATTAAA-GGTCCCAAT---------------------------------------------------------------------------AGTTGAAGTTC------------------------------ATTCA-GCAGA---TTTTCATT-TATCTCTTTTCTT i rn4.chr11 C 0 I 132 s cavPor3.scaffold_34 8637695 233 + 24440124 ACT-TTAAATGTTA---TTTCCAGGACAAA-----ACACT---------------TTTAAG-AAACCATTCT-------TCTTTCATA---TTTTT--CTGTC-TTCATGTGCGGACAGAACACTGTCTCCATCCCTGCTG-GAATAT----TATCTCTCT--GAC-------CCTTAGAGACTATGTAAGTGTAGA----AAGAAA-CATTTATTAATTTTACTTTCTACAACATAA-AGTCTCTAT---------------------------------------------------------------------------AATCAAATATC------------------------------AGTCA-ACAAAT--ATTTCACT-TATCTTTATGCCA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22011780 358 - 163896628 TCT-TCAAATGTTA---CTTCCAGGAAAAGGAGAGCACCT---------------GATAATAAAGCTATTCTTCA----TCTCTAATA---TTCTTAACCCTC-CTTAAGTGTGCACAGAACCTTGTCTCTACTCCTGGTCGGAATGC----TGTGTCTCT--GTCTCCGTCTCCTTAGAGACTTTGTGGCTGTGGAAGAGAGAAAA-TGTTTGCTCATTTTACTTCCTA-----TAA-AGTCCCAGTGTCTTAGAATCCACAGCTGGCATCTATTTAGACTTTGAATTATAAAGGTACTTCAAAGAGTTAGTGGGAAAATGGAATTAAATGTCTGAATTATTTTGATGCAAAACAATGTTGAAATCCATGCAGTT--TTTTCATTATATCCATTTTACA i oryCun2.chr14 C 0 I 11 s bosTau4.chr1 138169669 231 - 161106243 TCT-TCAATTGTTA---CTGCCAGTAAAAGGAGAGTACCT---------------GATGAAAAAGCCATTCT-------TCTCTCATAATTTTCTC--------CTAATGAGTACACAGAATCCTGTCTCCAATCTGATGG-GAACAC----TGCCTCTCTGACTC--------TTTAGAGTTTGTGTGGATATGAG----GAGCAAGTATTGGTTAATTTTGCTTCCTA-----TGATGGTCTCAAT---------------------------------------------------------------------------GGTTGAAGATC------------------------------AGTAA-AAAAAA------CTTT-TAGCTTCATACTA i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28509648 242 - 41866177 TCT-TCAGATGCTA---TTGCCAGTAAAAGGAGAGTGCCT---------------GATAATAAAACAATTCT-------TCTCTCATATTCTTCTC--CTCTTTCTTGTAAGTACACAGAATACTGTCTTCGTCCTGGTGG-GACCAT----TGTCTCTGT--CTC--------CTCAGAGTTTGTGTAGGTGTGAG----GAGAAA-TGTTTGTTAATTTTGCTTCCTAAAAAGTAA-AGTCTCAGT---------------------------------------------------------------------------GGTTGAAGGTT------------------------------TGTCA-ACAAAC--TTTTCTTT-TATCTTCATACTA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28158570 211 - 42263495 TCT-TCAGATGTTA---CTGCCAGTAAAAGGAGAGCACCT---------------GATAATAAAACAA---T-------TCTCTCACATTCTTCTT--GTCTCAC---------------ATGCTGTCTCCATCCTGGTAG-GAACAC----TGTCTCTCT--GTC--------TCCTTAGTTTGTGTGAGTGTGAG----GAGAAA----ATGTTAATTTTGCTTCCTA-----TAA-ATTCTCAAT---------------------------------------------------------------------------AATTGAAGGTC------------------------------CATCA-ACAAA-------CTTT-TATTTTCATACTA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41948730 245 + 62548349 TCT-TCAGAT-TTA---TTGTCACTAAAAGGGGAACACCT---------------GGTAATAAAAGTATTCT-------TCTCTCATATTCTTCTT--CCCGT-TGTTACTATGGAAAGAATACTGTCTCCATCCTGGTCA-GAACAG----TCTCCCTGT--CTT--------CTTGGAGTTTGTGTGGGTGTGGAAAG-AGAAAA-TGTTTGTTAATTTTGGTTCCTCTACGGTAA-AGTCTCAAT---------------------------------------------------------------------------GGTTAAAGGTC------------------------------AGTCA-AAAAACTGCCGTGATA-CATCTTCATGCCA i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=56737.000000 s hg19.chr4_gl000194_random 180736 39 + 191469 TTATCTTGGAA---------TTACCAACTGGCTTCTACTTGGA-TTTTG s panTro2.chr4_random 3127505 39 + 6711082 TTATCTTGGAA---------TTATCAACTGGCTTCTATTTAGA-TTTTG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 297657 39 + 189746636 CTATCTTGGAA---------TTACCAACTGCCTTCTATTTAGA-TTTTG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22824408 39 - 98319150 TTTTCTTATGG---------TTGCAAGTTTACATCTATGCAGA-TTTTA i mm9.chr16 I 205 C 0 s rn4.chr11 73465072 40 - 87759784 CTGTCTTTTGG---------TTCCAAGTTTACATTTATGCAGATTTTTA i rn4.chr11 I 132 C 0 s cavPor3.scaffold_34 8637928 39 + 24440124 GTGTCTTTAAA---------TTACCATCTTGTGTCTGTTCCGA-TTTTG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22012149 48 - 163896628 TTGTATTGAAAGAGTCATTCTTTTAATTTTATTTTTCCGCTAA-CTTTT i oryCun2.chr14 I 11 C 0 s bosTau4.chr1 138169900 35 - 161106243 ATGTCTTAAAA---------TTGCCAAGTGGCTTCTATTTAGA-T---- i bosTau4.chr1 C 0 I 2289 s equCab2.chr26 28509890 39 - 41866177 ATGTCTTGCAA---------CTGCCAGCTTGCTTTTATTTAGA-TGTtg i equCab2.chr26 C 0 I 1121 s canFam2.chr31 28158781 39 - 42263495 ATGTTTTACAG---------TTGCCAAATGGTTTCTATTCAGA-TGTtg i canFam2.chr31 C 0 I 836 s loxAfr3.scaffold_13 41948975 38 + 62548349 ATGTCTTGAAG---------TTGCCAGCTGGATTCTATTTAGA-TTGG- i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=75593.000000 s hg19.chr4_gl000194_random 180775 326 + 191469 AATAA--------TGAaagaaaag---aactagcatt---------------------tgttagaacttac-tgtgtt-------ccagaaactttattgatg--ccatttcttctcattatc-acattcattctttc----aattagtattattt--ttttccatcttaatgaggtggga-ccagaggttttgtaatatccactaacccactgtggatttcatggattgcaagaggaagaaagcatg---------gtggaactcagg-t-ttctctga-ttccaaattcacat-----cctttcATGTCTCC--ATGAAAAATAGAAA----------AGATAAATTGGGCTCTATTCTAACAAGAGAAACACAATTTTCCG---TCA-GT--TAAATGAATAATTCTT s panTro2.chr4_random 3127544 310 + 6711082 AATAA--------TGAaagaaaag---aactagcatt---------------------tgttagaacttac-tgtgtt-------ccagaaactttattgata--ccatttcttctcattatc-acattcgttctttc----aattagtattattt--ttttccatcttaataaggtggga-ccagaggttttgtaatatccactaacccactgtggatttcatggcttgcaagaggaggaaagcatg---------gtggaactcagg-t-ttctctga-ttccaaattcacat-----cctttcATGTCTCC--ATGAAAAATAGAAA----------AGATAAATTGGGCTCTATTATAACAAGAGAAACACAATTTTCCG---TCA-AT------------------ i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 297696 308 + 189746636 AATAA--------TGAaagaaaag---aactagcgtt---------------------tgttagaacttac-tgtgtt-------ccagaaactttattgatt--ccatttcttctcattatc-acattcattctttc----aattagtacta-tt--ttttccatctcaagaaggtggga-ccagaggctttgtaatgttcaccaacccactgcagatttcatggcttgcaagaggaagaaaccatg---------gtggaactca-g-t-ttgtctga-ttccaaattcacat-----tctttcATGTTTCC--ATGAAAAATAGAAA----------AGATAAATTGGGCTCTATTCTAACAGGAGAAACATAATTTTCCA---TCA-GA------------------ i rheMac2.chr2 C 0 C 0 s mm9.chr16 22824447 316 - 98319150 TATAA--------TATAAATAGAG-------AACCTTGTATGTTTAGAGGACCTCGTGTGTTAGCTGTGTC-CATGCTAAAAAAAAAATAGC---GGTTAATA--TCATGTCTTTTAACTATTAAGACTTAGTTTTCC----AAGTGGTATTTTTA--TTTTCCATAGTTTCAGAACAAGATCGAGTGGCTATG-GCCAGACATTAGCTTTCTCTAGATTTCCTAGCTTTTAAGAGGTCAGAACCACA---------GTGGAACTAAGA-C-TGGTG-------TCATCCCAAACTTCTGGGCTTCCAACATCC--ATGTTAAACAAAAA--------GTAGAGGGATTGGGAGTCACTC-----AG----------TTTTTCA---TGA--------------------- i mm9.chr16 C 0 C 0 s rn4.chr11 73465112 293 - 87759784 TATAA--------TATAAATAGAA-------AACCTTGTA------------------AATTAGCTGAGCC-TATGTT---AACAATATAGC-----TTAATA--TCATGTCTTTTAAATATTAATGCTTGCTTTTTC----AAACATTATTTTTA--TGTTTCATATTTTTAAAACAATATTGAGAGGCAATG-GCCAGATAATAGCTTTCTTTAGATTTCCTAGCTTTT------------CAACA---------GTGGAACTAAGA-T-CGGTGT---TATTTATCTCAAAAGTCTGGGCTTCCAACATCC--ATGTTAAACAAACAAACAAAATATAGAGGAATAGGGAATAACTC-----AG----------TTTTTCA---TGA--------------------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8637967 297 + 24440124 TGATA--------CAAAGAAAGCT-------AACATT---------------------TGTTGTAAGTGTC-AATATT-------CCAAAGC-----TTATTGGTTTTGGTCTTTTATTTGTT-GCATTCATTCTTCC----AGTTAATGTCCTTGCTTTTTCTTTAACTGTGGGACAAGAGAATTTGGCA------TAGTCAATAGATTGCAGTAGATTTTATGGGATACAAAAAAGAAG--TCACA---------AGGGAACTCAGATT-TGATGT---TTCTAAGCTCATGC-----AGCATTGTATCTCC--ATGCTGAATGGAAA---AGAATGTAACTAAACCCTGTATCAACC-----AGGGGAAGACAATTTTCTG---CCA--------------------- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22012197 299 - 163896628 TGAAATGTCCTTGTATCAAAAGAGTAACATTAACCTT---------------------TGTTAGTA----T-TATGTT-------CCAGAAATTCTGTTGATA--------CTAGTAGTTATC-ACACTTACTGTTTC----AATTCATGTTACTG--CTTC---TATTTTTAAAATATGGGGCCAGAGCTTTGAAATACTCACTAATTTGCTGTAGATTTCATGGTTTGCAAGAAGAAGAAACCACA---------TTGGAACCTAAA-T-TAATT------CTAAGTTCAAGA-----ACTTTAATATGCCC--CTGCTGAATAGAAG---------AAGCTGGACTCAACAGCAAAC-----AGGGAAAGATAGTTTTCCA---CCAG-------------------- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 138172224 305 - 161106243 AAACA--------TAAAATAAGAA---AGCTAAGGCT---------------------TCTAAGGACTGACATATATT-------CCAGAAATTGTATTGATA--CTATTTCTTTTAATTAAT-AAACTC--TTTTCC----AATTAGCGTAATTT--TTTCT-----------------------ATGCTTTGAAAGGTTCACTAACTAGTTGCAGGTTTCATAGCTCACAAGAGGAAGAAACTGCAGTGAACTCTGTAGAACTCTGG-A-TGTTGGAC-TTTAAAATTCAC---------TTTTGTATCTCC--ACTGATCACAGAAG----------AGAGAAAC--AACTCTCCTGCAAGTAGAGAACCAAAATCTCCAA---TCT---GAAAAATGGA-AATCCTC i bosTau4.chr1 I 2289 C 0 s canFam2.chr31 28159656 293 - 42263495 AATCA--------TAAAAGAAGAA---AGCTAACATT---------------------TATAAAAATTGAC-TATGTC-------CCAGAAATTATACTGATA--ATATTTTTTCTAATTATC-ACACTCATTTTTCT----AACTAATGTATTTG--TTTCC-----------------------ATGCTCTGAAAG---CATTCATCACTTG------TGATAG------AAAGGAAGAAACCATG---------GTATAACTCAGG-CTTGGCAGAC-TTCAAAAGTCTCAT----GCTTTTTGTACTTTCATATGGAACAGAGAAG----------AGAGAAACTAGACTCTTCTGCCCCCAGGGAACCAATTTTTTTAA---TCA---GAGAAATGAATTATCTTT i canFam2.chr31 I 836 C 0 s loxAfr3.scaffold_13 41949013 311 + 62548349 AATCA--------TAAAGGCAGGg---agctaacatt---------------------tataaggattgaa-tgtatc-------ccagaaactatattgaca--taatttcttttaatcctc-acacttatttattcctcaagttagtgccatt---tttctcattttaaaaatgtgtga-tcagagactttgaaaggttcactgtac----atagatttcatggattacaagaggaagaaaccatg---------gtggaatttagg-t-ttgtctgactctaaaagtcaggt-----gccttcACGTCTAT--GTTTACCAGAGAAT----------AGAGAACCTGGATGTATCTGAAACCAAGGAACCAAAAATTTCCAAAGAAA--------------------- i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e equCab2.chr26 28509929 1121 - 41866177 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=-2849.000000 s hg19.chr4_gl000194_random 181101 121 + 191469 TTTTATTTTATTTTAttttatttttattattatactttaagttttagggtacatgtgcacattgtgcagattagttacatatgtatacatgtgccatgctggtgcgctgcacccaGATACC s bosTau4.chr1 138172529 16 - 161106243 ----------------------------TTTAAACTTTTAATTT----------------------------------------------------------------------------- i bosTau4.chr1 C 0 C 0 e rn4.chr11 73465405 0 - 87759784 C e mm9.chr16 22824763 0 - 98319150 C e loxAfr3.scaffold_13 41949324 0 + 62548349 C e cavPor3.scaffold_34 8638264 0 + 24440124 C e oryCun2.chr14 22012496 0 - 163896628 C e canFam2.chr31 28159949 0 - 42263495 C e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e equCab2.chr26 28509929 1121 - 41866177 I e rheMac2.chr2 298004 0 + 189746636 C e proCap1.scaffold_76270 5717 5460 - 11548 I e panTro2.chr4_random 3127854 0 + 6711082 C e ponAbe2.chr3 42411556 4548 + 202140232 M a score=284754.000000 s hg19.chr4_gl000194_random 181222 206 + 191469 TAAATGAATAATTCTTAAACCTCAAAAATAAAAC--GTAGCAAAACCTCAATTCAAGAGTAGACATAAAGGTTG---TGACATGGGTGGCAGGGACATATGTC---TAGTGACA----------GATTTCCTATGCATATCTGACCAAAAATCCCCCTCATGATTTTCAAATCAGATGCTTAACTACATTTAATGA--GTTTCCCGAATCATTAATA--------TCAGGCTCT s oryCun2.chr14 22012496 216 - 163896628 AAAATGAATTATTCTCAAACTTTAAAGATAAAATTTGTAGCTGAAACAC-----AAGACTAAACTTATAAGTAATTAT-TCATGGGTATCAAAGAATTAAGTC---TAATAGCATAGTAACATAGGATTATTATGAATATCTGATCAAAAATCTCTCTCTTGATTCTCAAATCAGATACAGAAATGTATTTAATATGAGTCCCATGAATCATTAATA--------TTAAGCT-T i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8638264 211 + 24440124 AA---AAATTATAT-TAAAATTTGCAGATTAAATTTGTAGCAGCCTCTC---TGAAGATTAGAATTATGAGTAA---TGCCATCGGTATCAAGGTCGTATGTC---TAGTGACACAGTAACACAGAGTTTCTATGAATATCTAAACAAAGATCTCCCTTACAATTTTCAAATCAGA--AACAACTACATTTTCTGAAAGGGCCATGAATCATTAATA--------TTAGCCTAT i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73465405 221 - 87759784 AACATGAGTTATCTATGAAATTTGAGGATAAATTACACAGCAATATTTC-----AAGATCAGACTTTTAAGTAGCAGCAGCATGGATATAAAGGATTTATGTAGTGTAGTAGCATGGTAAAACAAAATTACTATGAAAATTTGACCAAAACCCACACTCATCATCTCCAGGTCAGATGTGCAGCTGCATTTGATAACGATCCTGTGAATCATCAGTG--------CCAGCCTCT i rn4.chr11 C 0 C 0 s mm9.chr16 22824763 218 - 98319150 TACATGAGTTATCTATGCAATTTAAGGATAAATTACGTAGCAATATCTC-----AAGATCAGACTTTTAAGTAGTCTTAGCATGGACATAAAGGATTTATGTC---TAGCAGCATGGGAAAACAAAATTACTATGAAAATATGAGCAAAACCCACACTCATCATTTTCAGGTTAGATGTGCAGCTGCATTTGATAATGATCCTATGAATCATCAATG--------CCAGCCTTT i mm9.chr16 C 0 C 0 s rheMac2.chr2 298004 210 + 189746636 TAAATGAATAATTCTTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACGTGGGTCGCAGGGACATATGTC---TAGTGACAT--------AGGTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCGAATCACATGCACAACTGCATTTAACGA--GTTTCATGAATCATTAATA--------TCAGGCTCT i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3127854 208 + 6711082 TAAATGAATAATTCTTAAACCTCAAAAATAAAAC--GTAGCAAAACCTCAATTCAAGAGTAGACATAAAGGTTG---TGGCATGGGTAGAAGGGACTTATGTC---TAGTGACAT--------AGATTTGCTATGCATATCTGACCAAAAATCTCCCTCATGATTTTCAAATCAGATGCATAACTGCATTTAATGA--GTTTCACGAATCATTAATA--------TCAGGCTCT i panTro2.chr4_random C 0 C 0 s loxAfr3.scaffold_13 41949324 200 + 62548349 -AAATGAATTGTCTTTAAAATTTGAAGATAAAAC----AGTAAAACATC-----AAGACTACACTTACAAGTAG---T-GTATGGGTAGCTAGGAGATGTATC--ACAGTGACAT----------AGTTGCTATGAATATCTGACTAAAAATATCCCTCATGATTCCCAAATTATAAGCACACCTGCATATAATGAAAGTTACATGAAATGTGAATA--------CCAGACTCC i loxAfr3.scaffold_13 C 0 C 0 s canFam2.chr31 28159949 199 - 42263495 -------ATACTTTGTAGG---TAAAAATAG-----GTAGAAAAACCTCAATTCAAGATTACATTTAAAAGTCA---TGACGTGAGTAGTGAGGACATATGTC---TAGTGACATAAT---ACAAAGCTACTATGAACGCCTGACTAAAAATCTCCCTCATGATTCCCAAATCATATGCACGGCTACATTTAATAAGAGTTACATGAATCAGTA-----------TCAGGCTCT i canFam2.chr31 C 0 C 0 s bosTau4.chr1 138172545 206 - 161106243 --AA---ATCCTCTTTAAACTCTGAAGAT------------AAAATCTCAGGTCATGACTAGATTGCAAAGTAG---TGATATATGAAGCT-GGGCATATGTC---TAGAGATGTAGTATCATAAGGTTGGTACGAATACCTGA-TGAAAATCTCCCTCATGATTCCCAAATCATATGTACAGCTGCATTTAAT---AGTTACATGAATCATTAATATTGGGCTGTCAGGCCCT i bosTau4.chr1 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e equCab2.chr26 28509929 1121 - 41866177 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=502626.000000 s hg19.chr4_gl000194_random 181428 295 + 191469 GAAAACAGGATCATTAAAA-ATGATTAAGACTTTCAACAACAAATA-TCTTATCTAAATAGTAAGGAA--ATTATATTAGATG----GCTCCATTCC-CTGGGCAG-TCTAGTTAACAATTCGACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAA--TTATGAAAG-TTTTTCTAACTTTGTGCTTAAGGT--AGTTGGCCATTCTTCCTCTTGG-GAATAAGAAGGGTAGA----T-TTTCTGTCGAAGCAT----TTTGCT-ATTGCTTT----TCA--ATTTCCTTTTATGGAAAA------------------------------TAGATA-----AAATAGCaa-ttttttaa----- s panTro2.chr4_random 3128062 294 + 6711082 GAAAACAGGATCATTAAAA--TGATTAAGATTTTCAACAACAAAGA-TTTTATTTAAATAGTAAGGAA--ATTATATTAGATG----GCTCCATTCC-CTGGTCAG-TCTAGTTAATAATTCAACTTGTTCGAAG-CTATAAAATATGGCAACTTAAAAAA--TTATGAAAG-TTTTTCTAACTTTTTGCTTAAGGT--AGTTGGCCATTCTTCCTCTTGG-GAATAAGAAGGGCAGA----T-TTTCTGTCGGAGCAT----TTTGCT-ATTGCTTT----TCA--ATTTCCATTTATGGAAAA------------------------------TAGATA-----AAATAGCAA-CTTTTTAG----- i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 298214 295 + 189746636 GAAAGCAGGATCATTAAAA-AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAA--ATTATATGAGAGG----GCTGCATTCC-CTGGGCAG-TCTAGTTAACAACTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAA--TTATGAAAG-TTTTTCTAACTTTGTGCTTAAGGT--GGTTGGCCATTCTTCCTCTTGG-GAATAAAAAGGGCAGA----T-TTTCTGTCAAAGCAT----TTTGCT-ATTGCTTT----TCA--ATTTCCATTTATGGGAAA------------------------------TAGATA-----AAATAGCAA-TTTTTTAG----- i rheMac2.chr2 C 0 C 0 s mm9.chr16 22824981 317 - 98319150 GAAAACACAGTTTTCAGAGTATGTTTAAGATTTTTAACAGGGATTG-CCATTTATTAATAGCAAGAAC--ATGATATTAAATGCAAGACTTTATTCCTCTATGCTC-TCTGGTT--CAGTTCAGCTTTTTCAGTA-TTATAAAATACAATAGCTAAAATTA---TATGGAAA-TTCTTTTAGTTTTCTGCTTAATAT----------ATTTTTCTTTCCACAAAATAAAAAGGG-AGA----T-TACTAAGCAAAGCACATTTTTTCCT-TTTATGTT----TTAATATTTTTGTTTCTTGAGAGATCTGGAGTG-----------GGCATGCTTTGGGTATCATGatatat----ttttaagt----- i mm9.chr16 C 0 C 0 s rn4.chr11 73465626 313 - 87759784 GAAAACAAAATTTTCAGAGTACTTTTAAGATTTTTAACAGGGACCG-CCATTTATAAATAGCAAGTTC--ATGATATTAAATGCAAGGCTTCATTCCTCCAGACTG-TCTGGTT--CGGGTCATCTTGTTCAGTA-TTATAAAATAGGATGACTGAAA-TA---AATGCAAG-TTCTTTTAGTTTTGTGTGTAATAC--AGTTGACAATTTTTCCTTCCAC-AAATAAAACGAG-AGA----T-TACTGATCAAAACAC-TTTTTTCCT-TTTGTGTT----TTA--ATTTCCGTTTCTACAGAGATCTGGAGTG-----------GGCATGCTTTGGGTA-----AAATAG----TTT--GGG----- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8638475 313 + 24440124 GAAGTCAGAA-TATCAAAGAAATGTTAATACTTTCAGCTATGAAAA-TCTTGTCTAAATATTAAGAAA--ATTGTACTAAGCAGAGAACAT-ATTTCTCCAGGTAG-TCAGGTTAACAGTTCAGCCTGTACAACA-CTATAAAATAGGATAATTACAATT------TGAAAG-TTATTTAAACTTTATGTTTATTGT--AGTTGGTCATTCTTCTTCACAT-GTGTAAAAACAG-AAAACAGT-TTTCTGTCAAAGCAG----TTTGCT-ATTGTATT----TCA--ATTTCCATTTCTACAGAGATATTGGG----------------GTGTCTCAAGTA-----AAATAGTAATTTTTCAAT----- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22012712 333 - 163896628 GAAAACAGAATTTTCAAAAGAAGATTAAGAATTTCAACAACAAAGA-ACTTATCTAAATAGTAATGAA--ATTATATGAAACACAGTACTCCACTCC-CTAGGAAG-TCTGGTTAAGAATTCAGCTTGTTCAATA-TTATAAAATGTGACAACTGAAAAAAAATTATGAAAGATCTTTTTAACTTTGGGTTTAATGT--AGTTAACCATCTTCCTCTTGGG-AATTAAAAGGGC-AGA----T-TTTCTGTCAAAACGT----TTTGTTAATTCTTTT----CTG--GTTTCCACTTCTGGAGAGATCTGGAAAGGAGAGAGACCAGGGATGACTTGGGTA-----AAAGAGCAA-TATTCAAC----- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 138172751 301 - 161106243 GAGAGCTGAATTGTCA----AAGATTAAGATTTTCAACAACAAAGA-TCTTGTCTAGATAGTAAGAAA--CATACATTAATCAGAGAATTCT------CCAGGCAA-TTTGGTTAATAATTCATCTCACTCAATA-TTATAAAATATGACAACTGAGAAAA--TTATGAAAG-GTCTTCAGAGTTCT----CAATGT--AGTTGGCCATACTTCCTCTTGC-GAATTAAAAGGGCAAA----T-TTTCTGTCAAAGGTT----TTTGCT-ATTTTCTT----CCC--ATTTCTACTTCTGAGGAGATCTGGATTG-----------AGGATGACTTAGATA-----AAATAGCGA-TGT---------- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28511050 319 - 41866177 GAGAAGAGGATGATCAAAGGAAGATTAAGATTTTCAACAACAAAGA-TCTTGTCTAAGTAGTAAGAAA--ATTATATTAAACAGAGGATTCTATTTC-CTAGGCAG-TCTGGTTAACAATTCAGCTTGCTCCATG-TTATGAAATATGACAGATGAAAAAA--TTATGAAAG-TTCTTCTAAATTTGAGCTCAATGT--AGTTGGCCATACTTCCTCTTGA-GAGTAGAAAGGGCAGA----T-TTTCTGTCCAGGCTT----TTTGCT-ATCTTTTT----CCT--ATTTCCATTTCTGGAGAGATCTGGAAAG-----------GGGATGACTTAGACA-----AAATAGCAA-GTTTTCAG----- i equCab2.chr26 I 1121 C 0 s canFam2.chr31 28160148 299 - 42263495 GGAAGCTGAATTACCAAAGGAAGA-TAAGATTTTTAACAACAAAGATTTTTGTCTAAATAGT---CAA--ATTCTATTAAACAGAGGACTCTAGCCA-CCAGGCAGTTCTGGTTCACAATTCAGCTTGCTCAATGTTTATAAAATATGACAAC--AAATAA--TTAT-AGAA-TTCTTCTAACTTTG---------------TGTCTATACTTTCTCCTGG-AAATTAAAAGGGCAGA----TATTTCTGTCAAAGCCT----CTTGCT-GTTGTTTT----CCA--ATTTCTATTTCTGGGGAGATCTGAAATG-----------GGGATGACTT----A-----AAGTAGTCA-TTTTTCAG----- i canFam2.chr31 C 0 I 1795 s loxAfr3.scaffold_13 41949524 323 + 62548349 GGGAGCAGAATTATCATAA---GATAAAGATTGTGGACAATAAAGA-TCTTGTATATATTGTAAGAAAATATTATAGTAAACAGATGATTCTATTCT----------GGTGAACAAGAATTCAGCTTGTTCAAGG-TTAAAAAACTTGAGAACTGAAAAAAAATTATGAAAG-TTATTCTAAATTTGTGCTCGGTGTATATTTGGCCGTATTTCCTCTTGG-GAATATAAAGGGCAGA----T-TTTCTGTCACAATCT----CTTGCT-ATTCATTTAAAACCA--ATTTCCATTTCTGAAGAGGTCTGGATTG-----------GGGATGACCTCGATG-----AAACAGCat-ttttttttttcag i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=40621.000000 s hg19.chr4_gl000194_random 181723 22 + 191469 tta-taaatttaaaGTCAAAATG s panTro2.chr4_random 3128356 22 + 6711082 TTA-TAAATTTAAAGTCAAAATG i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 298509 22 + 189746636 TTA-TAAATTTAAAGTCAAAATG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22825298 22 - 98319150 tta-aaaattaaaaataaatata i mm9.chr16 C 0 C 0 s rn4.chr11 73465939 22 - 87759784 tta-aaaattgaaattaaatata i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8638788 20 + 24440124 TTA-AAAGTT--AAGTCAAAATG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22013045 22 - 163896628 TTA-AAACATTAAAGTCAAAAgg i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 138173052 19 - 161106243 ----AAAATTTAAAGTCAAAATG i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28511369 21 - 41866177 -TAAAAAATTTAAAGTC-AAATG i equCab2.chr26 C 0 C 0 s canFam2.chr31 28162242 22 - 42263495 TTATATATTTTAGACAG-AAATG i canFam2.chr31 I 1795 I 248 s loxAfr3.scaffold_13 41949847 22 + 62548349 ttt-aaaatttaaagtaaaaatg i loxAfr3.scaffold_13 C 0 C 0 e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=-51347.000000 s hg19.chr4_gl000194_random 181745 41 + 191469 GAGATAATTAAG----TAT--CTCCATTAATTAAGTAAAGATTAATT s panTro2.chr4_random 3128378 41 + 6711082 GAGATAATTAAG----TAT--CTCCATTAACTAAGTAAAGATTAATT i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 298531 45 + 189746636 GGGATCATTAAGTAATTAT--CTCCACTAATTAAGTAAAGATTAATG i rheMac2.chr2 C 0 C 0 s mm9.chr16 22825320 15 - 98319150 ta--------------tat--tt--taatttCT-------------- i mm9.chr16 C 0 I 3397 s rn4.chr11 73465961 15 - 87759784 ga--------------tat--tt--taatttCT-------------- i rn4.chr11 C 0 I 1514 s cavPor3.scaffold_34 8638808 14 + 24440124 GA--------------GGT--CT--TAGaatt--------------- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22013067 9 - 163896628 ca--------------agc--attt---------------------- i oryCun2.chr14 C 0 I 4310 s bosTau4.chr1 138173071 33 - 161106243 --------GAAG----CAA--CTTAAGAAGTTAAAAAAAATCCAAAT i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28511390 35 - 41866177 --------AAAG----TAATTTTTAAGAATTTTTTAAGAAATCCAAT i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41949869 22 + 62548349 --------gaaa----taa--tttttaagatttttt----------- i loxAfr3.scaffold_13 C 0 C 0 e canFam2.chr31 28162264 248 - 42263495 I e otoGar1.scaffold_106215.1-352619 267583 14998 - 352619 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=-31311.000000 s hg19.chr4_gl000194_random 181786 29 + 191469 -----------TTTTTAAAA---------------------------TAGCATTTTC------------------------------------------T------ACATTCTAA s rheMac2.chr2 298576 29 + 189746636 -----------TTTTTTAAA---------------------------TAGTATTTAC------------------------------------------T------AAATTCTAA i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128419 30 + 6711082 -----------TTTCAAAAA--------------------------ATAGCATTTAC------------------------------------------T------AAATTCTAA i panTro2.chr4_random C 0 C 0 s otoGar1.scaffold_106215.1-352619 282581 98 - 352619 -----------TTTTAAAGACACCAAGTTTGAGTCTAGTAGCTGATACAACATCTCCTTGCTACCTACCTTCTCCAGCCTTCTCTGTGGACTACAGCAAT------ACATTCAGA i otoGar1.scaffold_106215.1-352619 I 14998 N 0 s cavPor3.scaffold_34 8638822 17 + 24440124 -----------------------------------------------ttttattttt------------------------------------------t---------ttttaa i cavPor3.scaffold_34 C 0 C 0 s bosTau4.chr1 138173104 30 - 161106243 ------------CCTAAAAC---------------------------CACTGAACCC------------------------------------------T----GTCAAATCCAA i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28511425 29 - 41866177 ------------CTT--------------------------------TACTGAATCC------------------------------------------TAATCGATAAATCTAA i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41949891 32 + 62548349 tttttttttttttGTAAAAA---------------------------CAGCCTTTAC------------------------------------------T------A-------- i loxAfr3.scaffold_13 C 0 I 894 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28162264 248 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=20691.000000 s hg19.chr4_gl000194_random 181815 55 + 191469 ---TCAATC---AATTGAttgactatttttatccctggctcaatgtaactctctttgacat s rheMac2.chr2 298605 51 + 189746636 ---TCAATT-------GAttgactatttttatctctggctcaaagtaactctctttgacat i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128449 51 + 6711082 ---TCAATC-------GAttgactatttttatccctggctcaatgtaactctctttgacat i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8638839 20 + 24440124 ---------------------------------------taaaCAAAGCCCCCCTC--CCT i cavPor3.scaffold_34 C 0 C 0 s bosTau4.chr1 138173134 61 - 161106243 TCATCTTTCTCTCATATATTAACAGTTTTTAATCCTGGCTCAGTGTAACCCTCTCCCACat i bosTau4.chr1 C 0 n 0 s equCab2.chr26 28511454 61 - 41866177 CCATctgtctttcatatattgacaatttttacccctggctcaaagtggctctctcccacat i equCab2.chr26 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28162264 248 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=48568.000000 s hg19.chr4_gl000194_random 181870 97 + 191469 actcttgtcttaattctagtttaagtcaaaaatgtgtaatcatagatgactccttgc-cattttgatctctcagttctatgaacacctttgttctaac s rheMac2.chr2 298656 97 + 189746636 actcttgtcttaattctagtttatgtcaacaatgtataatcatagatgactctttgt-catcttgttctctcagttctatgaacacctttgatctaat i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128500 96 + 6711082 actcttgtcttaattctagtttatgtcaacaatgtgtaatcatagatgactctttgc-cattt-gatctctcagttctattaacacctttgatctaac i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8638859 95 + 24440124 AGCTCTGCTTTAATTCTAGTTGATCTCAGTGCTACATATTTATAGATGACTGCTGGC-CATTTTGATTTC-CATTTCT-TGAACTCTTCTACTACAAA i cavPor3.scaffold_34 C 0 C 0 s equCab2.chr26 28511515 98 - 41866177 actcctatcttaattctagttgatatcaatactatatcatcatagataaccctttgcatatcctggtcttccagttctttgaattcctctgctacaat i equCab2.chr26 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28162264 248 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=73970.000000 s hg19.chr4_gl000194_random 181967 213 + 191469 aataatgttttccaAC-AGAATTAtttctactcaaa--------------ct---tctgagatcaaa---------------tttgtggattcagtctca---------------ccccaatcaattcttcaactctcaggacaccaaat-ggtgtcctacaattcaattcaatcctgagactatct----ggagatagcat-agatcccaaaagttcagggttcaggcccacaagactgcccc---cacactattagagaggagttgtg------- s rheMac2.chr2 298753 216 + 189746636 gataatgttttccaAC-AGAATTGTTTCTATTCAAa--------------ct---tctgagatcaaa---------------tttgtggatttagtctca---------------ccccaaccaattcttcaattctcaggacaccaact-ggtgtcctacagttcaattcaatcctgaggctatctatctggagatagcatcagatcccatgagttcagggttcagtcccacaagactgcccc-----cgacattagagaccagctgtg------- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128596 218 + 6711082 gataatgttttccaAC-AGAATTAtttctactcaaa--------------ct---tcagagatgaaa---------------tttgtggatttagtctca---------------ccccaatcaatttttcaaccctcaggacaccaaat-ggtgtcctacaattcaattcaatcctgagactatctatctggagatagcatcagatcccacaagttcagggttcaggcccacaagactgcccc---cacaccattagagaggagttgtg------- i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8638954 236 + 24440124 GAAAAATTTTTTTACCTAAAACTCTTCCTActcaca--------------gtatatctgacatcaaatgtaaataagaactctttataattt---tctca---------------cacaaaataatctttcagttcttcaggtataagtt-agaatcctctagtttaattcagttctgacactatttaaatgaagttagtatcaaatttcac-agttaagagttcagcccccaaagactactttcttcacagattccaatgccgatccca------- i cavPor3.scaffold_34 C 0 C 0 s equCab2.chr26 28511613 207 - 41866177 gacaatgttttccacc-TGCTCTGTTGCTGcttacatca-----------gt---tctgtcaccaga---------------tatgtggggttttcctcc---------------caccaaccaattctcca-ctctgcagacatcaactgggtgtcctacaatgcaatt----tttaa--ctac----ctgcagttagtgtcatatccctcaagttaagga--tagtcccacaagac------------catttcagacaccaatcacaagttcgg i equCab2.chr26 C 0 C 0 s canFam2.chr31 28162512 239 - 42263495 gggtatgtttcccaaa-ta----gcttcaattcaaaatattcaatatgccat---tgtgttac--------------------attttggggcagcctgccctgggcccctacaACATTAACCACATCTCCA-CTCTCcagacatcaactgggtgttctacaattcaattcaaatctaa--ctattttgctgcagttattgtcctctcccacaagttaagga--ctgtcccacaagactgccct-----tcatttcagatactagtcacaagttcag i canFam2.chr31 I 248 I 212 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=20056.000000 s hg19.chr4_gl000194_random 182180 66 + 191469 ggcctcccatactcctgaccaactggctataaattaggacct-ccatggattccttcctcaggttct s rheMac2.chr2 298969 66 + 189746636 ggcctcccatactcctgaccaactggctagaaattaggactt-ccatggattccttccccaggttct i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128814 66 + 6711082 ggcctcgcatactcctgaccaactgtctataaattaggacct-ccatggattccttccccaggttct i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639190 65 + 24440124 tgccttttatttttctagaccattggctatacatcaagaattaccatag--cccttcctgaggttcT i cavPor3.scaffold_34 C 0 I 193 s equCab2.chr26 28511820 36 - 41866177 tatctcccgtacttctgatcC-TCACACCCAGATTGG------------------------------ i equCab2.chr26 C 0 C 0 s canFam2.chr31 28162963 44 - 42263495 ggcctcccattcttctgacccatcagccataaattag-agtt-cca--------------------- i canFam2.chr31 I 212 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=8703.000000 s hg19.chr4_gl000194_random 182246 82 + 191469 ataatttgctaagatggcgcacagaacccaagaaagc---------------actttgcttacagttactgtctgatacaaatcaggaactctcaaa s rheMac2.chr2 299035 82 + 189746636 ataatgtgctaggatggctcacagaacccaagaaagc---------------gttttgcttatatgtactgtctgatacaaatcaggaacagtcaaa i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128880 82 + 6711082 ataatttgctaagatggcgcacagaacccaagaaagc---------------actttacttacagttactgtctgatacaaatcaggaactgtcaaa i panTro2.chr4_random C 0 C 0 s equCab2.chr26 28511856 10 - 41866177 ----------------------------------------------------GCattatcaa----------------------------------- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28163007 89 - 42263495 acaactccct--------gtgcagattcgatAATAGCCAATccaggtgtgtcaccttaacaatgcttgctgtgttcaccaacccagaagctctccaa i canFam2.chr31 C 0 I 106 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e cavPor3.scaffold_34 8639255 193 + 24440124 I e oryCun2.chr14 22013076 4310 - 163896628 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=9591.000000 s hg19.chr4_gl000194_random 182328 53 + 191469 tagaagagacacatagggccaggtatggtgaaaaggggcacaaagctgccata s rheMac2.chr2 299117 53 + 189746636 tagaagagacacatagggccaggtatggtgaaaaggggcacgtcactgccata i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3128962 53 + 6711082 tacaagagacacatagggccaggtatggtgaaaaggggcacaaagctgccata i panTro2.chr4_random C 0 C 0 s equCab2.chr26 28511866 19 - 41866177 ------agctgcggagga--agttgtg-------------------------- i equCab2.chr26 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e cavPor3.scaffold_34 8639255 193 + 24440124 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28163096 106 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=-1679.000000 s hg19.chr4_gl000194_random 182381 38 + 191469 tgac---------ctataagtatatcactctatcaccctcccagcac s tarSyr1.scaffold_89343 8975 36 - 9184 tgactgtcataggccattagtgattaactcgatctc----------- i tarSyr1.scaffold_89343 N 0 N 0 s rheMac2.chr2 299170 38 + 189746636 tgcc---------ctctgggcatatcattgcgtcaccctcccagcac i rheMac2.chr2 C 0 I 141 s panTro2.chr4_random 3129015 38 + 6711082 tgac---------ctctaagtatatcattgtatcaccctcccagcac i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639448 36 + 24440124 --ac---------tggtgactaactcataccacagcctttctccccc i cavPor3.scaffold_34 I 193 C 0 s equCab2.chr26 28511885 25 - 41866177 agaa---------ccattgatatataaccagagg------------- i equCab2.chr26 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28163096 106 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=4309.000000 s hg19.chr4_gl000194_random 182419 13 + 191469 ctcagaggt-----------gatg s rheMac2.chr2 299349 13 + 189746636 ctcagaggt-----------gatg i rheMac2.chr2 I 141 C 0 s panTro2.chr4_random 3129053 13 + 6711082 ctcagaggt-----------gatg i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639484 24 + 24440124 ctctgagattccactagtcaaagg i cavPor3.scaffold_34 C 0 C 0 s equCab2.chr26 28511910 13 - 41866177 atcagaagt-----------attg i equCab2.chr26 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28163096 106 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=35830.000000 s hg19.chr4_gl000194_random 182432 102 + 191469 gaggagagggctgacagtttcaaccatctagttatgccttcatgtttctgatgtccagcacacaccctgaagctatacgggtctccag---ccaccactcatgtc---- s rheMac2.chr2 299362 103 + 189746636 gaggagagggctgacagtcccaacaatctagttatgccttcatctctctggtgcccagcaccggccctgaagctatgcgggtctccag--cccaccagtcatgtc---- i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3129066 102 + 6711082 gaggagagggctgacagtttcaaacatctagttatgccttcatgtttctggtgtcgagcacccaccctgaagctatacgggtctccag---ccaccactcatgtc---- i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639508 90 + 24440124 gagaag------gtcagttccaactttcaaatcatacctttgtctttgcagtgactagtacccagcttgatgct------gtctgtat---acaagggcttagtc---- i cavPor3.scaffold_34 C 0 C 0 s canFam2.chr31 28163202 101 - 42263495 gagggcaggaatgaaaatgccaatcttctaatcatgtcttggtctttctggtgaccagcaagcaccctgagact--------ctctagggttccccagctatatcagtc i canFam2.chr31 I 106 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e equCab2.chr26 28511923 0 - 41866177 C e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=59874.000000 s hg19.chr4_gl000194_random 182534 130 + 191469 atgtcaatagcataaactcaggtatggctaagagagact---tatgactagtaaaggatggtcc--tctc---atctctatcaggaaatttca--agttttaggagctctg-----tactgtgaac---------tggggaggaagaccaaata s canFam2.chr31 28163303 126 - 42263495 atctcattagcataaactcagattcagttgaaagggagctattatgaacaacagaagatgc------------ttatcactagagaaattact-gggttttagaagctctg-----tctcagggct---------tgggga-aaagaccaaata i canFam2.chr31 C 0 I 106 s equCab2.chr26 28511923 118 - 41866177 atatca-----------------acAGTTGAAAGGGTGC--TTATGAATaacaaaagataccct--tctcaggctatcacttacgaaattaca-aggttttaggatctctg-----tgccaggaag---------aggggacaaagaccaaata i equCab2.chr26 C 0 I 58 s cavPor3.scaffold_34 8639598 151 + 24440124 atgtcattagtacaaaCTCAGAACTGGTTGAAAACTTCTTAGTATGGGTACCAGAAGGTGTTTCATTTTC---CTATCATTCAGGAAACTGCAGGAGCTTTAGGAATTATACATCTTACCTTGATCAGTTATTCTTGTGGAACATAGCTATATA i cavPor3.scaffold_34 C 0 C 0 s panTro2.chr4_random 3129168 130 + 6711082 atgtcaatagcataaactcaggtatggctaagagggact---tatgactagtaaaggatagtcc--tctc---atctctatcaggaaatttca--agttttaggagctctg-----tactgtgaac---------cggggaggaagaccaaata i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 299465 132 + 189746636 atgccaatagcataaactcaggtgtggctaaaagggact---tgtgactagtaaagggtggtcc--tctc---atccctatcgggaaatttcaagagttttaggagctctg-----caccatgaac---------tggggaggaagaccaaata i rheMac2.chr2 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e loxAfr3.scaffold_13 41949923 894 + 62548349 I e oryCun2.chr14 22013076 4310 - 163896628 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=66939.000000 s hg19.chr4_gl000194_random 182664 111 + 191469 GGACATACCCTAGACcagttgtgctaactacagtgtgcctcaaaattgcctacagttgtgttacaataaaagattgctgagacctgctattggaatttcagatttggtaga s rheMac2.chr2 299597 109 + 189746636 gaacaTACCCTAGACCGGTTGTGCTAACTACTgtgtgcctcaaaattgcctacagttgtgttaaaat--gagatcgctgaggcctgctcttagaatttcaggtttggtaga i rheMac2.chr2 C 0 C 0 s panTro2.chr4_random 3129298 111 + 6711082 GGACATACACTAGACcagttgtgctaactactgtgtgcctcaaaattgcctacatttgtgttacaataagagattgctgagacctgctattggaatttcagatttggaaga i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639749 93 + 24440124 GAGCCAGC------------------AATTCTgtgtgcatcaaaattgtctgaagttctattgcagtaagagattgcttggtcctggtcatgtagtttgtgatttggtagg i cavPor3.scaffold_34 C 0 C 0 s equCab2.chr26 28512099 110 - 41866177 agacacaccctagacccgtggttctaattactgtgcgcatcaaaattgcctgaaagcgtgttaaaat-agagtttgctgggacctgcccactgagtttctaaaccagtaga i equCab2.chr26 I 58 C 0 s loxAfr3.scaffold_13 41950817 110 + 62548349 gggcataccctTCATGagtgattccagctcctgtgtgcatcgaaattgcctaagagcttgttaaaat-acacattgctttcccctgcccctggtgtttccaattctgtgga i loxAfr3.scaffold_13 I 894 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e oryCun2.chr14 22013076 4310 - 163896628 I e canFam2.chr31 28163429 106 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42411556 4548 + 202140232 M a score=54175.000000 s hg19.chr4_gl000194_random 182775 43 + 191469 tctggggctgtaacctgagaatatgcacttctagtaagttccc s rheMac2.chr2 299706 43 + 189746636 tctgggggtgtaacctgagaatatgcagttctggtaagttccc i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42416105 43 + 202140232 TCTGggggtgtaacctgagaatatgcagttctagtaatttccc i ponAbe2.chr3 M 4548 C 0 s panTro2.chr4_random 3129409 43 + 6711082 tctgggggtgtaacctgagaatatgcagttctagtaagttccc i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639842 42 + 24440124 -cacaggatggaatctgagaactggaacatctaacaatgtcac i cavPor3.scaffold_34 C 0 C 0 s equCab2.chr26 28512209 42 - 41866177 tctagggtgg-agcccgagaatatgcaattctaacaagttcct i equCab2.chr26 C 0 C 0 s canFam2.chr31 28163535 32 - 42263495 -----------agcctgagaatatgaaattctaacaatttcct i canFam2.chr31 I 106 C 0 s loxAfr3.scaffold_13 41950927 42 + 62548349 -tccggggtgaagcctgggaaaatgcaatcctaaacagttccc i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e oryCun2.chr14 22013076 4310 - 163896628 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=41213.000000 s hg19.chr4_gl000194_random 182818 33 + 191469 aggtgatgctgatg------ctgttagcacagcgaccac s rheMac2.chr2 299749 33 + 189746636 aggtgatgctgatg------ctgccagcacagagaccac i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42416148 33 + 202140232 aggtgatgctgatg------ctgctagcacagggaccac i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3129452 33 + 6711082 aggtgatgctgttg------ctgctagcaccgggaccac i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639884 39 + 24440124 aagtgattctagtgACAGGCCTGTAGGGTATATCTTCAC i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22017386 26 - 163896628 AGGGGATGCTGATG------CTGCAGAACCAA------- i oryCun2.chr14 I 4310 C 0 s equCab2.chr26 28512251 33 - 41866177 gggtgatgccaacg------ctgcagatccagaggtcac i equCab2.chr26 C 0 C 0 s canFam2.chr31 28163567 33 - 42263495 gggtgatgctgatg------ctgctggtccagaggccac i canFam2.chr31 C 0 I 595 s loxAfr3.scaffold_13 41950969 33 + 62548349 aggggatgatgaca------ctgtaggtctgaagtccat i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=217220.000000 s hg19.chr4_gl000194_random 182851 166 + 191469 acttcc-aga-CGGACTGAGTGAAG-CAtcgtcgttacttataataggaacttctctgtagtcacaatttcattcatcccattctctgagct-c--ctcctttaatcattccctttcatacgctgaca-taaaatttttcaatctctctgagacctcca-----------------------------------------------------------------aactattattttat s rheMac2.chr2 299782 166 + 189746636 atttcc-aga-aggactgAGTGAAG-CAtcgtcattacttacaatagcaacttctctgtagtcacaacttcattcatcccattctctgagct-c--ctcctttaatcattccctttcataccctgaca-taaaatctttcaatctctctgagacctcca-----------------------------------------------------------------aactattattttat i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42416181 166 + 202140232 acttcc-aga-aggactgAATGAAG-CAtcgtcattacttataatagcaacttctctgtagtcacaatttcattcatcccattctctgagct-c--ctcctttaatcattccctttcataccctgaca-taaaatatttcaatctctctgagacctcca-----------------------------------------------------------------aactattattttat i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3129485 166 + 6711082 acttcc-aga-GGGACTGAGTGAAG-CAtcgtcgttacttataatagcaacttctctgtagtcacaatttcattcatcccattctctgagct-c--ctcctttaatcattccctttcatacgctgaca-taaaatttttcaatctctctgagacctcca-----------------------------------------------------------------aattattattttat i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8639923 144 + 24440124 ATTATCTAAACAGGACTTGATAATGATG-----------CATAAT---AACTTTTCTGTACATATAATATCATTTTtcccattttctgagct-tgcctcctttatttatg-cctttaaaatcatggac----aa----tcaacccttctgggtcctgcc-----------------------------------------------------------------aacta-----ttat i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22017412 157 - 163896628 -------AGACAAGACCTTGTGAAGATATTCTTGCTCTTTatgactggaacttctctgtgctcgcagttcaacctaccccattctctgagct-t--ctccttgaatcatt-tcttcaataccctgaccttaaaatctttcagtctcttagggaccttca-----------------------------------------------------------------gatta-----ttat i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28512284 167 - 41866177 actttc-aga-atgactgactgaga-cattgtgattgcttaaaccagcaactcctgtatgctcacaatttcgtccaccccattctctgagct-c--ttccttcaaaggtttcttttaatgctcttactttaaagtcttttgatctctctgggccctcca-----------------------------------------------------------------aattattaccttat i equCab2.chr26 C 0 C 0 s canFam2.chr31 28164195 225 - 42263495 ACTTTC------TGAAGGGccaaga-tcttgtcattacttagaacagcaactcctctctgctcataatttcatgcaccccattctctgatctcc--tttcatca----tttcctttaatactctgactttaaaatctttcaatctctctggggcctccaTAGTATATCGTACCATGCTAACtgtatgtatgtatgtatgtataaaggtatgtatgtatgtatttatttatttatttat i canFam2.chr31 I 595 I 542 s loxAfr3.scaffold_13 41951002 165 + 62548349 actttc-aga-gccactgGTCAAGA-TAGCAtcattacctataacagtaactgctctctacttacactcttatccgccccattctctgagct-c--ctcctttaatcattccctttgat--cctgcctttaaaatctttccaataccctggggtctttg-----------------------------------------------------------------aactattatttcgc i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=284962.000000 s hg19.chr4_gl000194_random 183017 241 + 191469 cataatcacaatgacccttacctacttgatgtactctatt-tcctgttct--------------------------------------------cctgcctaaattccatggccaaccattccc----aggaaacttcaacttcctggtttctctttcactttgctgaagctaaccaggaa--aat----aa----ccctggttagatccaaatttc--caccaaatccccacatatatttgagcaactagctatatggatcaaattgaaaaa-----------tatcccac-------ttgaaaatgagaatctcagtg s rheMac2.chr2 299948 241 + 189746636 catattcacaatgacccttacctccttgagatactctctt-gcctgttct--------------------------------------------cctgcctaaattccatggtcaaccattccc----aggaaacttcgacttccttgtttctctttcactttgctgaatctaactaggaa--aat----aa----ccctggtgagatccaaatttc--caccaaatccccacatatatttgagcaactagttatatggaacaaattgaaaaa-----------tatcccac-------ttgaaactgaggatctcagtg i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42416347 241 + 202140232 catattcacaatgacccttacctccttgatgtactctgtt-gcctgttct--------------------------------------------cctgcctaaattccacggccaaccgttccc----aggaaacttcaacttccttgtttctctttcactttgctgaatctaaccaggaa--aat----aa----cccgggttagatccaaatttc--caccaaatccccacatatatttgagcaactagctatatggagcaaactgaaaaa-----------tatcccac-------ttgaaactgagactctcagtg i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3129651 240 + 6711082 catattcataatgacctttacctact-gatatactctatt-tcctgttct--------------------------------------------cctgcctaaattccatggccaaccattccc----aggaaacttcaacttccttgtttctctttcactttgctgaatctaaccaggaa--aat----aa----ctctggttagatccaaatttc--caccaaatccccacatatattttagcaactagctatatggatcaaattgaaaaa-----------tatcccac-------ttgaaactgagaatctgagtg i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8640067 259 + 24440124 cacactgaaattgcccctaatttcattaatgtactctttt-gcctatttg--------------------------------------------tcagcccaaattccatgaggaatcatccat----gggaa--ctgaacttttctgttt-tctgtcattttgttgaatcacttttctaa--aat----gattgaccctgactatatccaaattct--ctcct-atcttcatctactcttgagaaaactgatacatggagcaaagttcagtaccatactgctttatatcacagtgaatttatcactaaaaatctcagtg i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22017569 300 - 163896628 catgttaacattgatgctaatctctttgatgtctcttttt-gtttgtttgtttgttttggtttggtttggtttggtttggtttggttttttattttggccaaaattccatgagcgatcattcac----atgaattctctacttccgtgtttctcttttgttttgatgaatca-gcttagaa--cat----aatcctccttggctacatataagttta--tacctaatcctcatttataagagagcaattgaatacagggagcaaattgcaaagccacaccattgtgttccactttgaatttataattgg------cagta i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28512451 261 - 41866177 cacagtaacattaaccctcactcccttgatggcctgtctt-gcctgtttt--------------------------------------------cctgcctaaattctgtggtcaattattctcttggacataccctcaacttccctgtttttcttttactttgttgaacca-gcttggaaataata---aa----tcctggtgagatccaaatttc--cacctaatcctcatctatccctgagcagctggatgtatggagcaaatcacaaaa-cacactgtcttctaccactttaaatttataac--agaatttcaga- i equCab2.chr26 C 0 C 0 s canFam2.chr31 28164962 250 - 42263495 CATGCTAAcattgaaccacagtcttttgaggtcatctcttagcctgtttt--------------------------------------------cctgcctaaattcca-ggtcaatcaatcccttttgtacatcctcaacttcctcatttccttttcattttgttgaatca-gcttggaa--aat----aa----tcctggctagatccaaatttc-------------cttttattcctgagcaattggatctatggaacaaatcacaaaa-ctcatgatcttctcccactgtaagtttatgactgagaatctcagca i canFam2.chr31 I 542 C 0 s loxAfr3.scaffold_13 41951167 249 + 62548349 -----taacatcgtttctgactcccttgctgtcctctctt---------------------------------------------------------gcctaaattccatacttagtcatactc-tgcatataccgtcaacttcctggacccaattttattttgttgtacca-gtttggaa--aatattcaa----tcctg-ttaaagtcagctctctccacctgatcctcacctacacctgagtagctgaacataatgaacaaacggcacaactggactgtcttagctccctttaaatacctaactgagaatctcaaag i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 138173195 0 - 161106243 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=484604.000000 s hg19.chr4_gl000194_random 183258 348 + 191469 ctgccaatcaatcaatcatactacatatgttccaatctattcattctctaatttacct-------agttttgtatcttatcctctctct--aatccctaacacttgcccagaa-atcctcaaagtctttttggttg-tgcttccctgagaac-attgaatcatcca-aagacaacttccacag-----------actcctgaaaccatttaaa-ctcactttccc--gtctacccccacat--actctc--cattttcacctattatt-atctgtgaaataactggccc-ctatctGTAT--ATTGTCTGatgatgatttctatattacaggtgaagaaaatgagaatagggt---tagagctactttctcattatagcatagcta s rheMac2.chr2 300189 344 + 189746636 ccgcctatcaatcaatca---tatatctgttccaatctattcactctctaatttacct-------agtttcgtatcttatcctgtctct--aacccctaacacttccccagaa-atcctcattctctttttggttc-tgcttccctgagaac-attgaatcaccca-aagacaacttccacag-----------attcctgaaaccatttaaa-ctcactttcccatgtctacacccacat--actctc--ccttctcacc---tatt-atctgtgaactaactggccc-ctctctGTAT--ATTGTCTGatgatgatttctatatcacagatgaagaaaatgagaatagggt---tagagctactttctcattataacatagctt i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42416588 345 + 202140232 ccgcctatcaatcaatcatactacgtatgttccaatctattcactctctaatttacct-------agttttgtatcttatcctgtctct--aacccctaacacttccccagaa-atcctcattctctttttggttg-tgcttccctgagaat-gttgaatcacacg-aggacaacttccacag-----------actcctgaaaccatttaaa-ctcactttcccatgtctacacccacat--actctc--ccttttcacctattatt-atc-gtgaact-gctggccc-ctatctGTAT--ATTGTCTGATGATGATTTCTATATTACAGAT---GAAAATGAGAATAGGGT---TAGAGCTACTTTCTCATTATAGCATAGCTT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3129891 350 + 6711082 ccgcctatcaatcaatcatactacatatgttccgatctattcactctctaatttacct-------agttttgtatcttatcctgtctct--aatccctaacacttccccagaa-atcctcaatgtctttttggatg-tgcttccctgagaac-attgaatcaccca-aagacaatttccacag-----------actcctgaaaccatttaaa-ctcactttcccatgtctacacccacat--actctc--cattttcacctattatt-atctgtgaaataactggccc-ctatctGTAT--ATTGTCTGatgatgatttctatattacaggtgaagaaaatgagaatagggt---tagagctactttctcattatagcatagctt i panTro2.chr4_random C 0 C 0 s cavPor3.scaffold_34 8640326 342 + 24440124 ccact-ctcaattataca-actacgtatgtcccaatctat------------gtacacagctaacagtttttcattatttcctatttcttaacctaccaa-acctcctaaaat-atcttcactttcctcttcattcttgatttttcaaaaac-atttaatcaaccagaagcaaagtttcatgacacatagaactatttttc-------------ctcactttctcatatttgtatccatat--tgtctg--gctatgtgcctattattCCCCCGTGCCCCATTTATCTCTTTATGC-CAA--ATTTTCTGACGTAGCTTATTCTAATGAAAA----GAAAAATAGAACATGAA---TTAAGTTACATTCTTACTGTACCATAGATA i cavPor3.scaffold_34 C 0 I 229 s oryCun2.chr14 22017869 339 - 163896628 ccatc-actgcctagcca-tc-----atgccccaattaatttgctctctg--gtacctggataggagctttgc---ttctcttgtcttttaaacctccaacacctgaaaaaatcattttttttttttttttggttctttcttccccaaggat-attgaatcaaccagaagaggattttcataa-----------atttttttaacc----aaa-tccactttctcatttctgttt--atat--gtcctg--tcttttcagccattatt-acatgtgaattatctggcac-ctatct-TGC--ATTCTCTGATTATCCTCATTTTGTAGAAA------AAAAATGGAAAGTGGACATTGAATTCATTTTCTCATTTT-CTATACATA i oryCun2.chr14 C 0 I 4 s bosTau4.chr1 22943704 343 + 161106243 CTTTTAATTTCTcaatcat-ctagatatgccctaatccattccctctctaattcacctaggtaatagttttgtatcttttcctatttcttacacat--gacac-tcaccagaa-att----attc-tttttggttcctacttccctaggaac-tttgaatcaagcagaaaataacttccatgg-----------actcctgccaccatttata-tctactttactgtgtctgcacctatattaaagttg--ccttctc----attatt-acacatgaattacatggccc-ttacctGCAC--ATTCTCTGATGACCGTTA--ATTTTAGAGATAAAAGCAGTGAGAATGGAGT---TAA-----TTATTTTCTTATAACACAGCTT i bosTau4.chr1 I 13390 C 0 s canFam2.chr31 28165212 353 - 42263495 ctgccaattagtcaatcaaactgcatatgccccaatccattcaccatttaatttgcctagatagcagtttcgcatcttatcctgtcttttaaacccccaacacttccccagaa-atct---gtctctttttggttgctacttccctgaggacaattgaaacaaccaaaagataattttc-cta-----------gctcctaaaaccatttatacccccctttactatatctacactc--at--agtctgccccttctc---tattagt-acacatgaactacctggtcc-caatctaTATACATTCTCTGATGATGCTTA-----TCGCAAATGAAGAAACTGAGAATGGAGT---TAAACTTCATATCTTATTATAACACAGCTT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28512712 337 - 41866177 --gcctgtaaatcaatcatactacatatgctccaatccattcactctcgaattcacct-------agctttgcatcttctcctgtctcttaaacctccaacacctccccagaa-atc----attcatttttgattcctacttttctgagaac-actgaatcaaccagaagagaatt-----tg-----------agtcctaaaactatttata-ctcattttactatatctgcatccatat--agactg-cctttctc---tattatt-ccccatgaactaccaagccc-ctatctgtat--attctcttatgatcctta---ttttacaaatgaagaaa-tgagaatggagg---taaagttacttttttattctgagacagctt i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41951416 349 + 62548349 ----ctgcctaccaatcatcctgcatatgccttaatccattcactctc----ttacctagatagcaattttgcaaattttcctccctcttaagcctccaaaacctcctcagaa-atcctcattctcttctttgttcctgctttcctcagaat-agagaatcaaccagaagagaattttcatag-----------actcctggaaacgtttata-tacaccttcccatatctgtgcccatgt--cctctg---tttctcacctattatt-acacatgaactgtctggtcc-ctatctgtac--gttctctgattatcctca---ttttacagacgaagcaattgagacttgtgt---taaagctactttctcattacaacatagctt i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=182567.000000 s hg19.chr4_gl000194_random 183606 140 + 191469 agaatcaaatccacgcagtcCACCACTGAAACTGGGGTTCCAAGTCAGTGTATTTGGAGAAGGAGAG-CTAGTAGAAAAATAAGGATGAAAAGATCCAGGATGAAGCTTCTGATGGAAGAAAAGGACA--TTTTTACTATTAT s rheMac2.chr2 300533 140 + 189746636 agaatcaaacccatgcagtcCACCACTGAAAATGGGGTTCCAAATCAATGTATTTGGAGAAGGAGAG-CTAGTAGAAAAACAAGGATGAAAAGATCCAGGATGAAGCTTCCGATGGAAGAAAAGGACA--TTTTTGCTATTAT i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42416933 140 + 202140232 AGAATCAAATCCACACAGTCCACCACTGAAACTGGGGTTCCAAGTCAATGTATTTGGAGAAAGAGAG-CTAGTAGAAAAACAAGGATGAAAAGATCCAGGATGAAGCTTCTGATGGAAGAAAAGGACA--TTTTTACTATTAT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130241 140 + 6711082 agaatcaaatccacgcagtcCACCACTGAAACTGGGGTTCCAAGTCAGTGTATTTGGAGAAGGAGAG-CTAGTAGAAAAACAAGGATGAAAAGATCCAGGATGAAGTTTCTGATGGAAGAAAAGGACA--TTTTTACTATTAT i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22018212 128 - 163896628 AGAGTGAAACTCACA-------------AGTCTGTGGGCTAACATTGGTGTACTTGGAAGCACAAAGCCTAGGAGGACAAAAGAGCTGAAAAGATACTAAAGGAAGCTACTGATGGAAGACAAGGACC--CTTTTGCTACTAG i oryCun2.chr14 I 4 I 311 s bosTau4.chr1 22944047 127 + 161106243 AAAT----------GTGTTATGTTTCTAGAGCTGGGGCTCAAAATCAGTGTATTTGAAAGGGGTGGACCTATTAGAAAACCAGTGGTGGAAAAATTCTAGATGAATCTGGCGACTGAGAAA----ACA--CTTTCACTACTAT i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28165565 134 - 42263495 AGATTCAAAGCCACAGAGTCCATTTCGTGAACT-------CAAATGTGTGCATTTGGAATGGAGGAGCCCTGTAGATAATCAGGTCTGGAAATACCCTGGATGAAACTACTGACTGAGGAAATAGACA--CTCTTACTACTAT i canFam2.chr31 C 0 C 0 s equCab2.chr26 28513049 138 - 41866177 agattcaaa--cccagactctgtttctagagctggggctcAAAATCTGTGCATTTGGAA-GCTGGAGCCCAGAAGAAAACCAGGGCTGGCGAGGTCCTGGATGAAGCTGTTGACTGAGGAAACAGACA--CTTTTACTGCTAT i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41951765 141 + 62548349 agtttccaacacaaagaggttgtttctagagctagtgctcAAAG-CAGTGCATTTGGAGGGGGATAT-CTAGTAGAAGACCATTGCTAGAAAAATCCTGCATGAAACTACTAAGTGAGAAAACAGAGATTCTTTTACTCCTAG i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=161075.000000 s hg19.chr4_gl000194_random 183746 131 + 191469 GAACTCCTTGAAG--TAGACCT-TAAGCATTCTCATCTGGACAAAT----A-TCCATTCATCCACTCCAGTGAGCTGACTAAGTTTTAGGATT------------TTAAGGGTCAGTGAACAA-----------------------------------------------------------------------TTATTCCTCA--TTCAGCAATTAA----------------------------------AGAAGG------------------ s rheMac2.chr2 300673 134 + 189746636 GAGCCCCTTGAAG--TAGACCT-TAAGCATTCTCATCTGGACAAATATCCA-TCCATTCATCCACTCCAGTGAG-TGACTAAGTGTTAGGATT------------TTAAGGGTCAATGAACAA-----------------------------------------------------------------------TTATTCCTCA--TTCAGCAATCAA----------------------------------AGGAGG------------------ i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417073 131 + 202140232 GAACCCCTTGAAG--TAGACCT-TAAGCATTCTCATCTGGACAAAT----A-TCCATTCATCCACTCCAGTGAGCTGATTAAGTTTTAGGATT------------TTAAGGGTCAATGAACAA-----------------------------------------------------------------------TTATTCCTCA--TTCAGCAATTAA----------------------------------AGAAGG------------------ i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130381 131 + 6711082 GAACTCCTTGAAG--TAGACCT-TAAGCATTCTCATCTAGACAAAC----A-TCCATTCATCCACTCCAGTGAGCTGATTAAGTTTTAGGATT------------TTAAGGGTCAGTGAACAA-----------------------------------------------------------------------TTATTACTCA--TTCAGCAATTAA----------------------------------AGAAGG------------------ i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22018651 238 - 163896628 GAGTCTCTTAAGG--TGAAACG-TCAACATTCTCACATAGACTAAT----T-TCAGCTCATTCACTTCAGCAAGATGAGAGGGGTTTGAAATT------------TTAACAGTCAATGAACAGAGAATGGGCATTTGGCCTAAAGGTTACTGTGCCAGTTGGAGTACCTGTTTATTGTATCAGAATACATAGGTTTGTCACTCAGCTTCAGCTCTTAATTCCATCTTCCTGTTAATATAGACTATAGGTGCCAGaaag------------------ i oryCun2.chr14 I 311 I 154 s bosTau4.chr1 22944174 125 + 161106243 GATACCCTTGAAA--TAGACCT-TCAGCATTCTCAGCTGGACCAAA----T-TCAGT-----CACTCCAGAGAGCTCACTAGGGTTTGAGATT------------TCTGAGGTCAGTGAACAA-----------------------------------------------------------------------ATA-CCATCA--CTCAGAAACTAG----------------------------------AGAGAA------------------ i bosTau4.chr1 C 0 I 4 s canFam2.chr31 28165699 123 - 42263495 GAGCACCTTGAAATTTAGACCT-TCAGCATTCTTATCCTGGCCCAA----A-TCAGT---------CTGGAGAGCTGACTAGTGTTTGAGATT------------TCAAGGGTCAATGAATGA-----------------------------------------------------------------------ATA-TCCTCA--CTCAGCAATTAG----------------------------------ATATGA------------------ i canFam2.chr31 C 0 I 4 s equCab2.chr26 28513187 123 - 41866177 CAGCCCCTTGAAA--CAGACGT-TCAGCATGCTCATA--GACCAAG----A-TCAGT-----CACCCCAGAGAGCTGAGTAGGATTTGAAATG------------TCGGGGGTCAGTGAACAA-----------------------------------------------------------------------ATA-CCCTCA--CTTAGCATTTAG----------------------------------AGATAA------------------ i equCab2.chr26 C 0 I 4 s loxAfr3.scaffold_13 41951906 162 + 62548349 GAGGTCCTTGAAA--TAGGTCTCTCAGGATTCTCATCTGGACAAAA----ATTCAGTTTACTTACTCCAGTGAGCTGACTAGTGTTTGAGACTAGATGTATAATATTGAAGGTCAGTGAACAA-----------------------------------------------------------------------ATA-TCCCCC--TTCGACAATTAA----------------------------------AGACCAAAAAAAAAAAAAAAAAAG i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=14667.000000 s hg19.chr4_gl000194_random 183877 21 + 191469 ATTAAT------------------------------------------------------------ATGAATATTATCTTG s rheMac2.chr2 300807 21 + 189746636 ATTAAT------------------------------------------------------------ATGAATGTTATCTTG i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417204 21 + 202140232 ATTAAT------------------------------------------------------------ATGAATATTATCTTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130512 21 + 6711082 ATTAAT------------------------------------------------------------ATGAATATTATATTG i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019043 81 - 163896628 attaattaaaattttaaattttaaatGTAGAAAATTTGATGTCTCAATTTAGCAATTAGACTTTACATACACATTATCATA i oryCun2.chr14 I 154 C 0 s bosTau4.chr1 22944303 21 + 161106243 CTTACC------------------------------------------------------------AGGTACATCATCTTC i bosTau4.chr1 I 4 C 0 s canFam2.chr31 28165826 21 - 42263495 CTTAAC------------------------------------------------------------TGGCACATTATCTTA i canFam2.chr31 I 4 C 0 s equCab2.chr26 28513314 21 - 41866177 CTCAAT------------------------------------------------------------AAGCACATTCTCTTC i equCab2.chr26 I 4 C 0 s loxAfr3.scaffold_13 41952068 21 + 62548349 CTTGAC------------------------------------------------------------ATATACATTATGTTG i loxAfr3.scaffold_13 C 0 I 276 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=53302.000000 s hg19.chr4_gl000194_random 183898 34 + 191469 ----------------GAGAAGTTTAATTTAAAACATATTTGATTGATTT s rheMac2.chr2 300828 34 + 189746636 ----------------AAGAAGTTTAATTTAAAACATATTTTATTGATCT i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417225 34 + 202140232 ----------------AAGAAGTTTAATTTAAAACATATTTCATTGATCT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130533 34 + 6711082 ----------------GAGAAGTTTCATTTAAAACATATTTGATTGATTT i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019124 32 - 163896628 ----------------GGGATATTTAATTTAAAAC--ATTTCATTGATAA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22944324 34 + 161106243 ----------------AGGACATTTAATTTAAAACACACTTCatgggatt i bosTau4.chr1 C 0 I 294 s canFam2.chr31 28165847 34 - 42263495 ----------------AGAACATTTAATTTATAACCTATATCATTGGTCA i canFam2.chr31 C 0 I 33 s equCab2.chr26 28513335 27 - 41866177 ----------------AGGACATTTAATTTAAAACATATTTCA------- i equCab2.chr26 C 0 I 16 s loxAfr3.scaffold_13 41952365 50 + 62548349 gaagagcattatgTTAGGATCATTAAATTCAAAACATATTTCATTGGTCT i loxAfr3.scaffold_13 I 276 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=298305.000000 s hg19.chr4_gl000194_random 183932 233 + 191469 --------TTGGCAATTGTCTT--CTATC-AGATCATTACCAATC--CATATGAATTGGTAGGAAGGGAGAAAACCCAAAATTTAATCAGATGCCTGA----AGTTAGGGAACA-TTTTATAACCAACCCAGGGGGAGAAAAATGCTCAAAAGGGGAAAGATGAGGAC--AGAAAATACATTTC--AAAGATTTTAACTTTTTGACAAAATGTCATTTCCGTGCAAGAAAA----AC---TGATTGTGTGAATATAACT--GTC s rheMac2.chr2 300862 234 + 189746636 --------TTGGCAACTGTCTT--CTATC-AGATCATTACCAATC--CATATGATTTGGGCGGAAGGGAGAAAACCCAAAACTTAATCAGATGCCTGA----AGTTAGGGAACA-TTTTATAACCAACCCAGAGGGAAAAAAATGCTCAAAAAGGGAAAGATGAGGACATAGAAAATACATTTC--AAAGATTTTAACTTTTTGACAAAA------TTCTGTGCAAGAAAA----ACTGATGATTGTGTGAATATAAATTTGTC i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417259 238 + 202140232 --------TTGGCAATTGTCTT--CTATC-AGATCATTACCAATC--C--ATGAGTTGGGAGGAAGGGAGAAAACCCAAAACTTAATCAGATGCCTGA----AGTTAGGGAACA-TTTTATAACCAACCCAGGGGGGAAAAAAGGCTCAAAAAGGGAAAGATGAGGACATAGAAAATACATTTC--AAAGATTTTAACTTTTTGACAAAATGTCAATTCTGTGCAAGAAAA----ACTGATGATTGTGTGAATATAACTTTGTC i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130567 233 + 6711082 --------TTGGCAATTGTCTT--CTATC-AGATCATTACCAATC--CATATGAGTTGGTAGGAAGGGAGAAAACCCAAAACTTAACCAGATGCCTGA----AGTTAGGGAACA-TTTTATAACCAACCCAGGGGGA--AAAATGCTCAAAAGGGGAAAGATGAGGAC--AGAAAATACATTTC--AAAGATTTTAATTTTTTGACAAAATGTCAATTCCGTGCAAGAAAA----AC---TGATTGTGTGAATATAACTTTGTC i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019156 238 - 163896628 --------AATACAATTGTACTAGCTGTCTATTTCTCTTCTAAGC--TACATAAAC----AGGAGTGAACAGAACCCAGAGCATTCACAGATGCTTAA----AGTTAGGGAAAATTTTTACAGCTAACTCAGAGATG-ACAAGTGTTCAGAAAGAGAAATTTGAAGACATCAAAAATAAACTTC--AAAGA-ATTAGTTTTTTGATAAAATATCAATTCTATACCCAAATG----ACTAATGATCGTATGAAAATAATTTTACC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22944652 234 + 161106243 --------TTAGTAACTATCTG--CTCCC-TGATCATTTCCACTC--TATAACAGT-GGGAAGAGTGGAAAGAACCCAGAACTTTCTCAAATGCTTGAAGTTAGTTAGGGAAAA-TTTTGTGT----CCTTG-GAAG-AAAACAGCTCAGAAAGGTAAGCTTGAAGATATAGAAAGTAAACCTAAAAAAAATGTTATCTTTTTGAGAAAATGTTGAATCTCTGCAAGA-------ACAACTGATCGTGTGAAAATAACTGTC-- i bosTau4.chr1 I 294 C 0 s canFam2.chr31 28165914 237 - 42263495 --------TTGGAAATGATCAG--ATAGC-AGATGGTTACAAATCTATATATGAGT-GGGAAGAGTGGAGAGAA-CCAGAATTTTTCCAGATGCCTGA----AATTAAGGAAAT-TTTTACGT----CCCAGGGGAG-AAAAGGGCTCAGAAAAGGAGGGTTGATGACATAGAAGATAAACTTC--AAAAATTTTATTATTTTGACAAAATGTCAGTTTTGTGAAAGAAAAGCACACTAATGAGTATGTGAAAATAACTGTC-- i canFam2.chr31 I 33 I 218 s equCab2.chr26 28513378 221 - 41866177 --------TTGGTAATTGTCGG--CCATC-TGATCATTTCCAGTC--TATACGAGT-GGGAGGAGTGGAGAGAACCCAGAGTTTTCCCAGGTGCCTGA----TATTAGGAGAAA-TTTTATAT----TCCAGAAAAG-CGAAGGGTTCAGAAAGGGAAGGTTAAGGACGTAGAAAATAAACCTC---AAATCTTTACCTTTGTGATGAAATGTCAA------GAAAG--------ACTGATGATTGTGTGGATATAACTTTG-- i equCab2.chr26 I 16 I 2 s loxAfr3.scaffold_13 41952415 221 + 62548349 AATGCAACTTTAGTATCATCTG--CTATC-AGATCTCTCCCAGTC--TATATAAGT-GGAAGAAATGGAGAGATGCTAGAACTTTTCTGTATGCCTGA----AGTTAAGGGAAC-TTTTATAT----TGCTGGGAAG-AAAGGGGTCAAGAAAGTGAAGGTAGATGGCATAGAAGA------TC-------------TTTTTTGAGAAAAGGTTAATTCTATGCAAGAAC-----AC---TTGGTGCATGAAGATAACATTGTC i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=136281.000000 s hg19.chr4_gl000194_random 184165 154 + 191469 ATTTATATCTGCCAATGTGTTCAGAAAT-----ATATAACCTATAA-----TT--TTTTTAATAGTAGTTTGTTAAAACAAAATTT----------------ATTCATCAAAGTATCT--ATAA-------CATTCT-AAAAAT-ACTAAAAATTTTCAATTT-------------------------------------------------AAATATTAAGCTAAACAGCTCTGTATATAT s rheMac2.chr2 301096 150 + 189746636 ATTTACATCTACCAATGTGTTCAGAAAT-----ATAGAACCTGTAAG----TT--TTTTTAATAGTAGTTTGTTAACACAAAATTT----------------ATTCATCAAAGTGTCT--AAAA-------CATTCT-GAAAAT-ACTAAAAATTTTCAATTT-------------------------------------------------AAATATGAAACTAAACAACTCTG-----AT i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417497 153 + 202140232 ATTTACATCTGCCAATGTGTTCAGAAAT-----ATATAACCTATAAG----TT--TTTTTAATAGTAGT---TTAACACAAAATTT----------------ATTCATCAAAGTATCT--AAAA-------CATTCTGAAAAAT-ACTAAAAATTTTCAATTT-------------------------------------------------AAGTATTAAGCTAAACAGCTCTGTATATAT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130800 155 + 6711082 ATTTACATCTGCCAATGTGTTCAGAAAT-----ATTTAATCTATAAG----TT--TTTTTAATAGTAGTTTGTTAACACAAAATTT----------------GTTCATCAAAGTATCT--CAAA-------CATTCT-AAAAAT-ACTAAAAATTTTCAATTT-------------------------------------------------GAAGATTAAGCTAAACAGCTCTGTATATAT i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019394 204 - 163896628 ATTTACATTGGTTTGTGTGTTCAGGAACATTTGATATAGTGTAGAAG----TTCCTTTTTAGAAGCAGATTTTTAATAAAAAAACT----------------TTGCTATGAAGTAC---------------TGGTCC-AAAAATAAATGAAAATCTTTGCTTTCTGAGAAGTTATTCATTAAGGTCACCAAAACACATTTGGATAATGCTAAAACTATCAACTTAAACAA--CTACCCACAC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22944886 173 + 161106243 ATTTATATCTGTCAATGTGTTTGGCaataatttatataatatatatG--CTCT--TTTTTAACACTAGC---TTAAGAGAAAGCTTTGTTTCTGAGAAATGTATCTATCAAAATCTTT-AAAAACATCTTTCATCCT-TAAAAT-GCA-CAAACTG-----TC-------------------------------------------------AAATATT--GTCAGACAACTCTGCATAT-- i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28513601 152 - 41866177 ATTCATATCTATCAGCGTGTTCAGCAATATTTTATATAATGTATAAG---TTT--TTTTTGATAGTAGTTTATTAATAAAAAGCTTTGTTTCTGATGA----ATTCATTGAAATCTCT-AAAAA-------CATTCT-GAAAAT-GCT-AAAATAAATAGTTT-------------------------------------------------AAATATTAA--------------------- i equCab2.chr26 I 2 I 220 s canFam2.chr31 28166369 166 - 42263495 ATTTATCTTCATCATTGTGTTCAGCAATATTT--TATAATGTATAAA-----T--TCTTTAACAGTAGTTTGTTAGTAAAAAGCTTTCTTTCTGAGGAATTTATTCATCGAAATCTCTAAAAAA-------AATTCT-GAAAAT-GCT-AAGATTTTGGATTT-------------------------------------------------AAAT-----GTCAGATGACTCTACATA--- i canFam2.chr31 I 218 C 0 s loxAfr3.scaffold_13 41952636 180 + 62548349 ATTCACAACCATCAATATGGTCAGCAATTTTTTATAAAATACGTATGTTCTTT--TTTTAAGTGGCATTTTAAGAATACAAAGCTTTGCTTCTGGGGAATTTATTCATGAAAATAACA-AGCAA-------CGTTCTGAAAAAT-GCT--GAATTTTCAATTT-------------------------------------------------AAATATTAATCCAAACAATCTTGTACATTT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=66613.000000 s hg19.chr4_gl000194_random 184319 44 + 191469 AAATAAGCTCAAACAAACGTGCATGCTTCCCAACAATAACACTG s rheMac2.chr2 301246 44 + 189746636 AAATAAGCTCAAACAAATGGGCATGCTCCCCAACAATAACACTG i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417650 44 + 202140232 AAATAAGCTCAAACAAACGTGCATGCTCCTAAACAATAACACTG i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130955 44 + 6711082 AAGTAAGCTCAAACAAACGTGCATGCTCCCCAACAATAACACTG i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019598 44 - 163896628 AAGTCAGTTTGGACAAATGTACATACTCTATGACATTAATGCCA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22945059 42 + 161106243 AAATAAC--TATATAAATGTACATACTAGGTGACAACAATGCCA i bosTau4.chr1 C 0 I 3 s equCab2.chr26 28513973 44 - 41866177 AAATAACTTTATATAAACGTATGTGCTCTGTGACGATAATGCCA i equCab2.chr26 I 220 C 0 s canFam2.chr31 28166535 44 - 42263495 AAATAACATTATACAAATGCACATGCACTGTGGAAACAATGCCA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41952816 44 + 62548349 AGATATGTTTATACATAAGTACATGCCCTGTGGCAACAGTGCTA i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e cavPor3.scaffold_34 8640668 229 + 24440124 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=164974.000000 s hg19.chr4_gl000194_random 184363 80 + 191469 CTACAGA--TATAGATTGGTGGTTTTGGTTTCATTTCATTTTATAATGGCAAATCTGGTTAAAACCCAGATTCTGggctggg s rheMac2.chr2 301290 80 + 189746636 CCACAGA--TATTGGCTGGTGGTGTTGGTTTCATTTCATTTTATAATGGCACATCTGGTTAAAACCCAGGTTCTGggctggg i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417694 80 + 202140232 CTACAGA--TATTGACTGGTGGTTTTGGTTTCATTTCATTTTAAAATGGCAAATCTAGTTAAAACCCAGATTCTGggctagg i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3130999 80 + 6711082 CTACAGA--TATTGACTGGTGATTTTGGTTTCATTTCGTTTTATAATGGCAAATCTGGTTAAGACCCAGATTCTGggctggg i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019642 74 - 163896628 CTTCAGACTTGCTGAGGGGTG----TGGTTT--TTTCATTTTATAATAACAAATTCGGTTAAAACTCAGATTCTGAACTG-- i oryCun2.chr14 C 0 C 0 s vicPac1.scaffold_188832 293 66 + 1186 ---CCAC--TGGTGGCTGG---------TTTTATTTCATTTTATAATGACAAATTTAGTTAAAACCCAGCTTCCGAACTG-- i vicPac1.scaffold_188832 N 0 I 6 s bosTau4.chr1 22945104 69 + 161106243 -----------TTGGCTGGTATTTTTGCTTTTATTTCATTTTATCATGATAAATCCAGTTAAAATCCAGCTTCTCAACTG-- i bosTau4.chr1 I 3 I 6 s equCab2.chr26 28514017 78 - 41866177 TTATAGA--TATTGGCGAGTGGTGTTGGTTTTATTTCATTTTATACTGACAAATCTGGTTAAAATCCAGATTCTGAACTG-- i equCab2.chr26 C 0 I 6 s canFam2.chr31 28166579 73 - 42263495 CTATCGA--TAATGGCTGGCGATTTTGGTTTCATTTCATTTTATAACGACAAATCTAGTTAAAACTCAGATTCCA------- i canFam2.chr31 C 0 I 12 s cavPor3.scaffold_34 8640897 57 + 24440124 -------------------------TGTTTTTATTTCACTTCATTGTGACAAATCTGTTTAAGACTAAGGATCAGAACTGAG i cavPor3.scaffold_34 I 229 I 5 s loxAfr3.scaffold_13 41952860 70 + 62548349 CTACTGA--TATCAGCTGGTGGTTTGGGTTTTATTTCAACTTATGGCCCTAAGTCTGGCTAAAATCCAGTTT---------- i loxAfr3.scaffold_13 C 0 I 13 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=132590.000000 s hg19.chr4_gl000194_random 184443 294 + 191469 cacagtggctcacgtctgtgatctcagcactttgggaggctgagacaggcaaatcacaaggtcaacagatcgggaccatcctggccaacatggcgaaaccccatctcttctaaaaaaa----------------------atacagaagttagctgggcatggtggcacgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttggacctgggaggcagaggttgca-tgagctgagactgtgccactgtactccagcctggtaacagagagagactccatctcaaaacaaaac--aaaacaaaac s rheMac2.chr2 301370 319 + 189746636 cgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcaagcaaatcacaaggtcagcagatcagcaccatcctggtcaacatggtgaaacctcatctctactaaaaaaaaaaaaaaaaaaaaaaagaaaccatacaaaaagtagctgggcatggtggcatgtgcctgtagtctcagctactcaggaggctgcggcaggagaatcacttggacctgggaggtggaggatgcagtgagccgagattgcgccactacactccagcctggtgacagagagagactctgtctcaaaacaaaacaaaaaacaaaac i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42417774 295 + 202140232 tggggtggctcacgcctgtgatcccagcactttgggaggccgaggcaggcaaatcacaaggtcaacagatcgggaccatcctggccaacatggtgaaaccccatctctactaaaggaa---------------------tatacaaaaattagctgggcgtagcggcacgtgcctgtagtcccagctacttgagaggctgaggcaggagaatcgcttggacccgggaggcggaggttgcagtgagccgagattgtg-cacggtactccagcctggtgacagagagagactccatctccaaacaaaac--aaaacaaaaC i ponAbe2.chr3 C 0 I 22 s panTro2.chr4_random 3131079 291 + 6711082 cgcagtggctcacgtctgtgatcccagcactttgggaggctgaggcaggcaaatcacaaggtcaacagattcggaccatcctggccaacatggtgaaaccccatctctactaaaaaaa---------------------catacaaaagttagctgggtatggtggcacgtgcctggagttccagctacttgggaggctgaggcaggagaatcgcttggacctgggaggcagaggtggcagtgagcagagactgtgccactgtactccagcctggtgacagagagagactccatctcaaaacaaaac--aaaaT----- i panTro2.chr4_random C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 22945173 6 + 161106243 I e loxAfr3.scaffold_13 41952930 13 + 62548349 I e cavPor3.scaffold_34 8640954 5 + 24440124 I e oryCun2.chr14 22019716 0 - 163896628 C e canFam2.chr31 28166652 12 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e vicPac1.scaffold_188832 359 6 + 1186 I e equCab2.chr26 28514095 6 - 41866177 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=5793.000000 s hg19.chr4_gl000194_random 184737 34 + 191469 aaaacaaaacCCCAGATTCTGAACTGACTCTCAC s panTro2.chr4_random 3131370 24 + 6711082 ----------CCCAGATTCTGAATTGAATCTCAC i panTro2.chr4_random C 0 C 0 s rheMac2.chr2 301689 34 + 189746636 aaaacaaaacCCCAAATTCTGAACTGAATCTCAG i rheMac2.chr2 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 22945173 6 + 161106243 I e loxAfr3.scaffold_13 41952930 13 + 62548349 I e cavPor3.scaffold_34 8640954 5 + 24440124 I e oryCun2.chr14 22019716 0 - 163896628 C e canFam2.chr31 28166652 12 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e vicPac1.scaffold_188832 359 6 + 1186 I e equCab2.chr26 28514095 6 - 41866177 I e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42418069 22 + 202140232 I a score=146626.000000 s hg19.chr4_gl000194_random 184771 1803 + 191469 AATAAGGAtctcaattgcttcaaagagaataaaacacctagaaatccaacttaaaagggatgtgaaggacctcttcaaggaaaactacaaaccactgctcaatgaaataa-----gatacaaacaaatgtaagaaccttccatgttcatgggtaggaagaatcaatattgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagcaacgaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagtcaatcctaaggcaaaagaacaaagctggaggtactacgctgcctgacttcaaactatactacaaggttacagtgaccaaaacagcatggtactggaaccaaaagagagatagaggccaatggaacagaacagagccctcagaaataatgccacatgtctacaactacctgatatttgacaaacttgacagaaacaagacctagggaaaggattccctatttaataaatggcgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaaaccttggaaaaaaaactaggcaataccattcaggacataggcatgggcagggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagccaaagaaagcaccatcagagtgaacaggcaacctacagaatgggagaaaagttttgcaatctactcatctgacaaaggacaaatatccagaatctacaatgaactccaacaaatttacaagaaaaaagcaaccccatcaaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactgcccatcagagaaatgcaaatcaaaaccacaatgagataccacctcacaccagttagaatgacgatcat-aaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttgatgggactgtaaactagttcaaacattgtggaagtcggtgtggcgattcctcagggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctgctctaaagacacatggacacgtatgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatcctatgcagccataaaaaatgatgagtttatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacaaaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaagggtaacatcacacactggggactgttgtgggatggggggaagggggagggatagcattagaagatatacctaatgttaaatgacgagttaatggttgtagcacgacagcatggcacatgtatacatatgtaacaaacgtgcacgttctgcacgtgtaccctaaaacttaatgtataataataataattaaaaaaa---aTGAAAACATATGTCCACACACACAAAAA--A s panTro2.chr4_random 3131394 1805 + 6711082 AATAAGGAtctcaattgcctcaaagagaataaaatacctagaaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaagatacaaacaaatgtaagaaccttccatgctcatgggtaggaagaatcaatattgtaaaaatggccatactgcccaaggttatttatagattcaatgccatccccatcaagctactaatgactttcttcccagaattggaaaaatctactttaaagttcatatggaagcaaaaaagagcctgcattgccaagtcaatcctaagccaaaagaacaaaggtggacgtacgacgctacctgacttcaaactatactacaaggctccagtgaccaaaagagcatggtactcgtaccaaaagagagatagaggccaatggaatgcaacagagccctcagaaataatgccgcgtatctacaactatctgatctttgagaaacctaacaaaaacaataactagggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaatcataaaaaccatagaaaaaaa-ccaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagctatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagtgaacaagtaaccaacagaatgggagaaaagtttcacaacttactcatctgacaaagggctaatacccagaatctacaatgaactccaacaaatttacaagaaaaaa--aaacccatcaaaaagtgggtgaaggatatgaacagacacttctaaaaagaagatatttatgcagccaaaaaacacgtgaaaaaatgct----atcactgcccatcagagaaaagcaaatcaaaaccacaatgagataccatctcacaccagttagaattgcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaatgattgtggtagtcaatgtggcgattcctcaagtatctggaactagaaataccatttgacccagccatcccattactgggtatgtacccaaaggattataagtcatgctgctctaaagacacatgcacatgtatgtttattgtagcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacataaacaccatgcaatactatgcagccataaaaa-ttatgagtttatgtcctttgtagggacatggatgaagctggaaaccatcattctcagtaaactatcacaaggacgaaaagccaaacaccgcatattctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactgggaactgttgtggggtggggggaggggggagggatagcattaggagatacacctaatgt-aaatgacgagttaatgggtgcagcacaccaacaaggcacatgtatagatatgtaatgaacctgcacgttgtgcacatgtaccctaaaacttcaagtataataatCATAATTAAAAAAAGAAATGAAAACATATGTCCACACACACACACACAA i panTro2.chr4_random C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e mm9.chr16 22825335 3397 - 98319150 I e bosTau4.chr1 22945173 6 + 161106243 I e loxAfr3.scaffold_13 41952930 13 + 62548349 I e cavPor3.scaffold_34 8640954 5 + 24440124 I e oryCun2.chr14 22019716 0 - 163896628 C e canFam2.chr31 28166652 12 - 42263495 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e vicPac1.scaffold_188832 359 6 + 1186 I e equCab2.chr26 28514095 6 - 41866177 I e rheMac2.chr2 301723 0 + 189746636 C e proCap1.scaffold_76270 5717 5460 - 11548 I e ponAbe2.chr3 42418069 22 + 202140232 I a score=37392.000000 s hg19.chr4_gl000194_random 186574 49 + 191469 AAGAAAAAAATAAGGATCTCAAAGAGGTCAATATGTA-TAT-----AATCT----ATTC s panTro2.chr4_random 3133199 49 + 6711082 AAGAAAAAAATAAGGTTCTCAAAGAGGTCAATATGTA-TAT-----AATCG----ATTC i panTro2.chr4_random C 0 C 0 s oryCun2.chr14 22019716 49 - 163896628 AATAGTAGGGTAAATACCTCAAAGAGATCCTTACATA-TGT-----AACTCAATC---- i oryCun2.chr14 C 0 C 0 s loxAfr3.scaffold_13 41952943 43 + 62548349 ------AGGATAAATAGTTCAAAGAGATCAACACATA-TGC-----AATCT----ATTC i loxAfr3.scaffold_13 I 13 C 0 s cavPor3.scaffold_34 8640959 34 + 24440124 -----------AAGTATCTCAAAGAGATTATTACATA-TAT-----AATCC-------- i cavPor3.scaffold_34 I 5 C 0 s mm9.chr16 22828732 19 - 98319150 ---------------------------TTAATATGGAGTAT-----AATCT-------- i mm9.chr16 I 3397 C 0 s ponAbe2.chr3 42418091 41 + 202140232 --------AATAAGGATCTCAAAGAGGTCAATATGTA-TGT-----AATCT----ATTC i ponAbe2.chr3 I 22 C 0 s rheMac2.chr2 301723 41 + 189746636 --------AATAAGGATCTCAAAGAGGTCAATATGTA-TAT-----AATCT----ATTC i rheMac2.chr2 C 0 C 0 s vicPac1.scaffold_188832 365 41 + 1186 ------AGGATAAGCATCTG--AAAGAAATAAATACA-TGTAGTCTAATC--------- i vicPac1.scaffold_188832 I 6 I 1 s bosTau4.chr1 22945179 41 + 161106243 ------AGAATGAATGTCTC--AGAGATCAATACATA-TGCAGTCTAATC--------- i bosTau4.chr1 I 6 I 1 s canFam2.chr31 28166664 42 - 42263495 -------GAATAAATACCTCAAAAAGATCAATATGTA-TGTTGTCCAATC--------- i canFam2.chr31 I 12 I 1 s equCab2.chr26 28514101 38 - 41866177 ------AGAATAAGTATCTTGAAGAAATCAATATATA-TGT-----AATC--------- i equCab2.chr26 I 6 I 1 e rn4.chr11 73465976 1514 - 87759784 I e tupBel1.scaffold_136731.1-86001 58436 7191 - 86001 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=-6838.000000 s hg19.chr4_gl000194_random 186623 25 + 191469 TT---------AAAAAAAAATTTTCTCCAAT------TGT s panTro2.chr4_random 3133248 24 + 6711082 TT---------AAAAAAAT-TTTTCTCCAAT------TCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42418132 25 + 202140232 TT---------AAAGAAAAATTTTCTCCAAT------TGT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 301764 25 + 189746636 TG---------AAAGAAAAATTTTCTCCAAT------TGT i rheMac2.chr2 C 0 C 0 s tupBel1.scaffold_136731.1-86001 65627 21 - 86001 tt---------aagaaataaagttaaataa---------- i tupBel1.scaffold_136731.1-86001 I 7191 N 0 s oryCun2.chr14 22019765 34 - 163896628 TTTAATTTAAAAAAAAAATACCTTACCCAGC------TGT i oryCun2.chr14 C 0 C 0 s mm9.chr16 22828751 33 - 98319150 -------TTGAAAATAAATGTGTTCTAATGTGTTCTCTGC i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8640993 23 + 24440124 -----------AATTTTAAGTCTTCCACTGT------TGC i cavPor3.scaffold_34 C 0 C 0 s vicPac1.scaffold_188832 407 23 + 1186 TT-----------AAAAAAATTGTTTCTTGT------TGT i vicPac1.scaffold_188832 I 1 C 0 s bosTau4.chr1 22945221 22 + 161106243 TT-----------AGAAATA-AATCTTTTCT------AGT i bosTau4.chr1 I 1 C 0 s canFam2.chr31 28166707 24 - 42263495 TT----------TAAAAAAATCTTTCCTGGT------TAT i canFam2.chr31 I 1 C 0 s equCab2.chr26 28514140 25 - 41866177 TT---------AGAAAAAAATCTTCCCTACT------TGT i equCab2.chr26 I 1 C 0 s loxAfr3.scaffold_13 41952986 27 + 62548349 -------TTTAAAAAAAAATTCTCCCACAGT------TGT i loxAfr3.scaffold_13 C 0 C 0 e rn4.chr11 73465976 1514 - 87759784 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=213744.000000 s hg19.chr4_gl000194_random 186648 89 + 191469 TTATTGAAAT-ATCACACAGGCTCTGACTTT----------GTTTATAC------CC-----TTAAAAACT--------ATGTAGATTGATGTGTAGCTTTTGTAAAGTGAAAGCTCAG s panTro2.chr4_random 3133272 89 + 6711082 TTATTGAAAT-ATCACACAGGCTCTGACTTT----------GTTTATAC------CC-----TTAAGAAGT--------ACGTAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42418157 89 + 202140232 TTATTGAAAT-ATCACACAGGCTCTGACTTT----------GTTTATAC------CC-----TTAAAAATT--------ATCTAGATTTACATGTAGCTTTTGTAAAGTGAAAGCTCAG i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 301789 89 + 189746636 TTATTGAAAT-ATCACACAGGCTCTGCCTTT----------GTTTATAC------CC-----TTGAAAAGT--------ATCTAGATTTATGTGTAGCTTTTGTTAAGTGAAAGCTCAA i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22019799 89 - 163896628 CTCTTGAAAT-ATCACACAGGTTCTTCCTTT----------GTTTATAG------CC-----TGAAAAAGT--------CTCTAGATTTATGTGTAGCTACTGCCAAGTGGAAGCTCAG i oryCun2.chr14 C 0 C 0 s mm9.chr16 22828784 87 - 98319150 TTCTTAAATA-CATATGCAGGGTCT-ACTTT----------GTTTATG-------TT-----TAGAAATAT--------ATTTAGATTTGTGCTCACCTATCACAATATGGTATCTCAG i mm9.chr16 C 0 C 0 s cavPor3.scaffold_34 8641016 116 + 24440124 TTCTTAAAAATCACTCACTGACTTTGACttttattataaaaatttatgaaaaattttaataataaaaatattatgaaaaattttaattCATGTCCAGCTATTGCAAAGTGGAA---CTG i cavPor3.scaffold_34 C 0 C 0 s vicPac1.scaffold_188832 430 88 + 1186 TTCTTAAAAT-ATTGCA-AGGCTCTGACTTT----------ACTTATAC------CC-----TGAAAAGTT--------ATGTAGATTTATGTACAGCTATTGCAAAGTGGACAGTCTT i vicPac1.scaffold_188832 C 0 N 0 s bosTau4.chr1 22945243 89 + 161106243 TTCTTAAAAT-ATCACATAGGCTCTGACTTT----------GGTTATAC------TC-----TGAAAAAGT--------ACCTAGATTTATCTACAATTAATGCAAGTTGGACACTTTG i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28166731 88 - 42263495 TTCTTAAGAT-ATTACACAGG-TCTGATTTT----------GGTTACAC------TC-----TGGAAAAGT--------GTCTAGATTTATGTGCAGCTATTGCAAAGTTGGAGCTCTG i canFam2.chr31 C 0 C 0 s equCab2.chr26 28514165 88 - 41866177 TTCTTAAAAT-A-TACACAGGCTCTGACTTT----------GGTTATAC------CC-----TGAAAAATT--------TTCTAGATCTATGGGCAGCTACTGCAAAGTGGTAGCTCTG i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41953013 63 + 62548349 TTCTTAAACC-ATCACACATGCTATGGCATT----------ACGTATAC------CT-----TGAAAAAGT--------ATCTAGATTTATGT-------------------------- i loxAfr3.scaffold_13 C 0 I 536 e rn4.chr11 73465976 1514 - 87759784 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=269296.000000 s hg19.chr4_gl000194_random 186737 177 + 191469 AATGTCTACTCTGTTCTGGTACCACTTTAG-TTTAATTGTTGGGAAATATTT----AAT-AAAAATGAATTACTCAACAAATGGAAAATTTGAACTTTGCATACT-AAATTTTTACTTCATA-TTATCAACTCTTGAAAAATAAGTGTGTATA---------TTA-----------------GAAATGACACTCATTTGACTAT----------------------------------------------------------------------------------------ACCATAA s panTro2.chr4_random 3133361 177 + 6711082 AATGTCTACCCTGTTCTGGTACCACTTTAG-TTTAATTGTTGGAAAATATTT----AAT-AAAAATGAATTACTCAACAAATGGAAAATTTGAACTTTGCATACT-AAATTTTTACTTCATA-TTACCAACTCTTGAAAAATAAGTGTGTCTA---------TTA-----------------GAAATGACACTCATTTGACTAT----------------------------------------------------------------------------------------ACCATAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42418246 177 + 202140232 AATGTCTACTCTGTTCTGGTACCACTTTAG-TTTAATTGCTGGAAAATATTT----AAT-AAAAATGAATTGGTCAACAAATGGAAAATTTGAACTTTGCATACT-AAATTTTTACTTCATA-TTATCAACTCTTGAAAAATAAGTGTGTATA---------TTA-----------------GAAATGGCACTCGTTTGACTAT----------------------------------------------------------------------------------------ACCGTAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 301878 177 + 189746636 AATGTGTACTCTCTTCTGGTACCACTTTAG-TTTAATTGCTGGAAAATATTT----AAT-AAAAATGAATTGGTCAACAAATGGAAAATTTGAACTTTGCATATT-AAATTTTTACTTCATA-TTATCAACTCTTGAAAAATAAGTGGGCATA---------TTA-----------------AAAATGACACTCATTTGACTGT----------------------------------------------------------------------------------------ACCATAA i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22019888 176 - 163896628 GATGTCAACTCTGCTCTTGTGGCTCTTTGG-TCTAATTGCTATAAAATATTT----AACAAAAAATGGGTTGGTTAAGAAATGGAAAATCTGAACTATATGCACT-AAATTTCTGCTTTGTG-TTATCAA--CTTGAAAAATAGGTTCATAGA---------GCA-----------------GAAACGACATTTATTTTACTAC----------------------------------------------------------------------------------------ACCATAA i oryCun2.chr14 C 0 C 0 s mm9.chr16 22828871 133 - 98319150 AATGTTCCCTCTCTTCTTAAAGGTCCTTTTATGTAATTGCCACAAAATAT-------------------TTGATTAAAAG--GGGAATTTTA------CTAAATT-AGAAAT-TGAACTGTACTTATTAAATATT-----------------------------------------------CCATTGTCATT--GTCCATGGC----------------------------------------------------------------------------------------TTGAAAA i mm9.chr16 C 0 I 2 s cavPor3.scaffold_34 8641132 193 + 24440124 CATGTCTTCTTTGTTCTAAGAGCTCTACAT-TTTAATTGCTATAACATACTG----AAT-ATAAATGCATTGGTTAACAGATGGAAACTTTAAACTTCATGGAGT-AGataa-taattttta-ttatcaaattttgaaaactaagtatataat---------ataaattttaCTACATCATGACATTTTTACTCATTTTACTAC----------------------------------------------------------------------------------------ATCATAA i cavPor3.scaffold_34 C 0 C 0 s bosTau4.chr1 22945332 166 + 161106243 AATGTCTACTCTGTTTTGGTGGCTCT-------TAATTACAATAAAATACTTATAAAAT-AT------ATTGGTTAACGAATGGATAATCTGAACCTTATATAGTGAAATTTTTACTTTGTG-TTTTCAATTCTTT--AAATTGGTGCATATA---------CTT-----------------GGAATGATATGCATTTTACTCT----------------------------------------------------------------------------------------ATCAT-- i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28166819 164 - 42263495 AATGTCTATTCTGTTTTGGTGGCTCT-TAG-TCTAATTGCTATAAAATATTT----AAT-AG------ATTGGTTGACAAATTGAAAATTTGAACTTCATGCACT-AAAGTTTTACTTTGTC-T--------------ATATATGCACCTATTTTTCAAGAGGTA-----------------AAAAT-ACATTCACTTCACTAC----------------------------------------------------------------------------------------ATCATAA i canFam2.chr31 C 0 C 0 s equCab2.chr26 28514253 176 - 41866177 GGTGTCTACTCTGTTTTGATGCCTCTCTAG-TCTAATTGCTGTAAAATATTT----AAT-AGAAACAAATTGGTTGACAAATGGAAAGTTTGAACTTTGTGCACT-AAATTTTTACTTTGTA-TTATCAGCTCTTGAAAAATAGGTGCATACT---------GTA-----------------GAAGTGACATTCA-TTTACTAC----------------------------------------------------------------------------------------ATCATAA i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41953612 251 + 62548349 AATGCCTACTGTGTTCTTGTGGCTCTCTGA-ACtaattattataaaatattt----aat-aaaaaGGAATTTGTTGGCAAATGAGAAATTTGAACTTTATGCTCT-AAATTT-----------T----GACTCTTGAAAAATAGTTACAAATT---------GTA-----------------GGAGTGTCATTCCTTTTACTACTTGTTGTTGTTGTTAGTTGCTGTCCagtcaattctgactcatggtgatgtgttcaatgtagaactgctctgtaggggtttaaaggcATATCATTA i loxAfr3.scaffold_13 I 536 C 0 e rn4.chr11 73465976 1514 - 87759784 I e proCap1.scaffold_76270 5717 5460 - 11548 I a score=1565205.000000 s hg19.chr4_gl000194_random 186914 578 + 191469 TATATTTCAGA--------CATTTTATCTTCAGCTACAGAA-TTTCTCCATCCTTTGAATTATGTTAGAGGGCTTTAGTTGGCCAGTATTGGTGATTCGCCTCCACTAATTCACAACTCTATTATCTTACCCCCGGGGATGCATTTCCATAGTTCTGCCTTGTAATGAGTGTCATTTTTTC---CTT--CTG---TTTTGTTGACTGCCATTCA-AATAGTTTTG-------G------------CTTTATCAGAGATTTTCACTTTATTG----TCAC-CCCC-TCATTTTTT-----TAACT--TCTCATAATTTACTGT-ATTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATTTG--------------------TTTCACTTTATTTTTAGCTTATGATACTTCT---------AAAGTCTGTACCCTTTTAATTTT-CACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAGGATGTCTCAGCATCTTGGTGAGTGGAATAGTTTATTTATAATCCAAAAAAATCCCCCATACTTTTTGTGAGCTATCTGCTTCTAAGtaaaaattttatata-taaattctt--taaaaaaaatCTTAAA--CTTCTGAGGGATT----GAATGA-GATTT----------------TAAA s panTro2.chr4_random 3133538 580 + 6711082 TGTATTTCAGA--------CTTTTTATCTTCAGCTACAGAA-TTTCTCCGTCCTTTGAATTATGTTAGCGGGCTTTATTTGGCTAGTATTGGTGATCCACCTCCACTAATTCCCAACTCTATTATCTTACCCCCAGGTATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCATTTTTTT---CTT--CTG---TTTTGTTGACTGCCATTCA-AGTATTTTTG-------G------------CTTTATCAGAGATTTTCACTTTATTGTTTATCAC-CTCC-TCATTTTTT-----TAGCT--TCTCATAATTTACTGT-ATTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATTTG--------------------TTTCATTTTATTTTTAGCTTATGATACTTCT---------AAAGTGTGTACCCTTTTAATTTT-CACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTTATTTCAAAATACCAGAAAGTAGGATGTCTCAGCATCTTGGCGAGTGGAATAGTTTATTTATAATCCAAAAAAA--CCCCATACTTTTTGTGAGCTATCTGCTTCTGAGtaaaaattttatata-aaaattCTT--GAAAAAAAATCTTAAA--CTTCTGAAGGATT----GAATGA-GATTT----------------TAAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42418423 575 + 202140232 TAGATTTCAGA--------CTTTTTATCTT----TACAGAA-TTTCTCCATCCTTTGAATTAAGTTAGCGGGCTTCAGTTGGCCAGTATTGGTGATCTGCCTCCACTAATTCACAGATCTATTGTATTACCCCCGGGGATGTATTTCCATAGTTCTGCCTTATCATGAGTGTTATGTTTTT---CTT--CTA---TTTTGTTGACTGCCATTCA-AATATTTTTG-------G------------CTTTATCAGAGATTTTCACTTTATTGTTTGTCAC-CTCC-TCATTTTTA-----TAGCT--TTTCATAATTTACTGT-GTTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATCTG--------------------TTTCATTTTATTTTTAGCTTATGATACTTCT---------AAAGTCTGTACCCTTTTAATTTT-CACTTGCTTCATCGTCACATTCT--TGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGTTTGGTGAGTGGAATAGTTTATTTATAATCCAAAAAAA--CCCCATACTTTTTTTGAGCTATCTGCTTATAAGtaaaaattttatatattaaattctt--gaaaaaaaatcttaaa--tttCTGGGGGATT----GACTGA-GATTT----------------TAAA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 302055 599 + 189746636 TATATTTCAGA--------CGTTTTATCTTCAGCTACAGAA-TTTCTCCATCCTTTGAATTATGTTAGCAGGCTTTAGTTGCCCCGTACTGGGGATCCACTTCCACTACTTCACAACTCTATTGTATTACCCCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TTTTT---CTT--CTA---TTTTTTTGACTGCCATTCA-AATATTTTTG-------G------------CTTTATCAGAGATTTTCACTTTATTGTTTGTCAC-CTTC-TCATTTTTT-----TAGCT--TTTCATAATTCACTGTGGTTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTGTGTTTAAGGCTTCAAACT-TTTTCATTTTATTTTTAGCTTATGATACTTCT---------AAAGTCTGTACCCTTTTAATTTT-CACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTGGATAGTGAAATAGTTTATTTATAATTCAAAAAAA--AACCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTA-TAAATTCCT--GAAAAAAACCCTTAAA--TTTCTGGGGGATT----GAATGA-GATTT----------------GAAA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22829006 570 - 98319150 TACATCTCAGG--------CTCT-TA----CAGGTACAAAA-TCCCCCTGTGATTTTATTTATGT-CATGCATTTGAGTTGACATGTGTCACCTTCCCACCTCTGATGATTCACAACTG-------TTTCCCCAGCATATGGCTTTCCATAGTTGAGTTTGGCGATTGGTCTTAA-TTTTT---CTTTTCCT---TTTCCTAGAGTGCCATCCA-ATTTTGGGGG-------G------------CCTTATCATAGATTTTCACTTTATTGTTTGTTAC-TTCC-T--TTTTTA-----TTTAT--TTTTGTAATTTACTGAAGTTATATCTCCCTAG--GCTTAGGGCCTTTACAGATTTGTTTTTAAGACTTAAAACCTTTTTCCTTTTATTTTTAGCTCATGATACTTGC---------AAAGTCTGTACCCTTTTGATTTC-----TACTTCATATTCACATTTGCATGTTTTGTTTTTATCTTAAAATACCAAAAACT-AAGTGTCTCAGCCACTTGGAAAGTAGATTAGtttatttataattaaaaaaaa--attCTTACTTACAGCA----AGCTACTCACAAGTTAAACTTTAATGTA-TAAATTCCT--GAAATA---TTTAAAA--CCTCTGAGGAATT----GGCACA-TATCC----------------C--- i mm9.chr16 I 2 C 0 s rn4.chr11 73467490 568 - 87759784 TATATCTCAGG--------CTCTCTG----CAGGTACAGAA-CTCCCCTGTGGTTTTATTTATGT-CATCCATTTGAGCTAACCTGTGTCATCTTCCTACCTCTGATGATTCACAACTC-------CTTCTCCACCATATGGTTTTCCATAGTTGAGCTTGGCAATTGGTCTTAA-TTTAA---CTTCCCAT---ATTTCTTGACGGCCATCCA-ATTTT--TTG-------G------------CCTTATCATA-AGTTTCGCTTTATTGTTTGTTACTTTCC-T--TTTTTC-----TTGAT--TTTTGTAATTTTCTGTATTTATATCTCCTTAG--CCTTAGAGCTTTCACA-ATTTGTTTCTAAGACTTCGAGCC-TTTCCCTATTATTTTTAGCTCACGATACATGC--------AAAAGTCTGTACCCTTTTGATTTC-TACTTACTTCCTATTCACATTCGTATGTTTTGTTTTTACTTCAAAATACCAGAAACT-AAATGTCTCAGCCACTTGGAGAGTAGGATAGtttatttataattaaaaaaaa--aat----CATACAGCA----AGCTACTCACAAATTAAACTTTAATCTA-TAAATTCCT--GACATG---TATAAAA--TCCCTGAGGAATT----GGCACA-CATTC----------------C--- i rn4.chr11 I 1514 C 0 s cavPor3.scaffold_34 8641325 590 + 24440124 CATTTTTCAGGGAGTTTATCTTT-TG----CTGG---AGAA-TTCCCCTATCACTTTAATTATGTGAATAGCCTTTAGTTGAATGACATTGCCAGTCTAACTCCCCCAATTCACGACTCTACCACTCTTCACCAGTGGATGCCTTACCAGAGTTCTGCCTAGTTACCAG-CTGTA-TTTTC---CTTATAGT---ATTTTCTGAGTGCTGTCAA-AATTGTTTTG-------G------------CTGTCTCAGGGATAGTCACTTGATTGTTTGTTCT-TTCC-A--TCCCCC-----CCCCCGATATCATAATTTACTCTAGTTATATCTGTTTAGAATTTTAGCTCCCTTACAGATTTGTTTTTAAGACTTCCAGTT-TTTTTGTTTTATTTTTAGCTCATGTTACTTGCAGAAACAGAAAAGTCTGTTCTCTTTTGATTTT-CACGTGGTTCACAGTCACATTCTTATGTTTTGTTTTCATTTTAAAATACCAGAA--T-GCATATCTCAGTAGCTTGGTGAACAGAATAGTTTCTTTGTATTTAAAAAAAA--AATT---CTTTTTGTG----AACTGCTCA-AAGATAAAATTTTATGTA-TAAATTTGT--GAAAAG---TGTTAAA--TTTCCAGAGAATT----G--ACT-GACTT----------------A--- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22020064 573 - 163896628 TATATTTCGGG--------CTTTTTATCGCCAGCTACAGAA-TTCTCCCATCCTTTTAATTATGTTAACAGTCTTTAG-TGGCCGAGCCTGGCTTACCACCTCCACTAATTCACAACTCTATTAT-ATTTCCCAAGGGATGCATTTCCATAGTTCTGCCTGGTTATCAATTTTGT-TTTTG---CT---CCA---TTTTTTTGATTACCATCCA-ATATTTTTTG-------G------------CTTTATCATGGATTTTCACTTTAATGTTTGTCGC-TTCC-C--TTTCTG-----CTAGTT-TTTCATAATTTATTGCCGTTATATCTGCCTCGGCTTTTAGTTCCTTTACAGATTTGTTTTTAAGACTTCAAACT-TTTTCCTTTTATTTTTAGCTCATGATACTTGC--------AAAAGTCTGTACCCTTTTGATTTT-CACTCGCTTGATCGTCACATTCGTGTGTTTTGTTTTCATTTAAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTGGTGAGCAGAATAGTTTATTTATAATTCAAAAAAA--TTA----CTTTTTGTGA--TATCTGCTTATAAATTAAGTTTTTA---A-AAAATTCCC--GA-----------AAA--AATCTGGGGAATT----GACTGA-CATTC----------------T--- i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22945498 604 + 161106243 ---ATTTCAGG--------CTTTTTATCTTCAGCTACAAAATTTTTTCCATCCTTTTAATTCTGATAACAGCCTTGAGTCACCCAGCATTGCCCATCCACTTCCACTAATTCACAACTCTATTATATTTCTCCAGAGGATGCATTTCCATAGTTCTGCCTTGTTATAAGGTTTATTTTTTTTTCCTT--CCATTTTATTTTTGACTGCCATCCA-GATTTTTTTG-------G------------CTTTCTCTGGGATTTTCACTTCATTGTTTGTCAC-TTCC-T--TTTTTTCCCCCTAGCT--TTTCGTAATATACTGCCGTTATATCTGCCTCGGCTTTTCGTTCCCTTACAGATTTGTTTTTAAGACTTCAAACT-TTTTCATTTTATTTTTAGCTCCTGAAACTTGC--------AAAAGTCTGTACCCTTTTGATTTT-CACTTGCTTCATTGACACATTCTTGTGTTTTGTTTTCATTTTAAAATACCAGAAAGTAAAATGTCTCTGCAGCTTGATGGGTGGAATAGTTTATTTATAATTCAAAAATT--TTT-TTACTTTTTGTGAGATATTTGCTTATAGGTTAAAACCTTGTGCA-TAAATTTCT--TAAAAAAA----TAAA--TTTCTGTGGAGTTGTCTGACTCA-CTTTT----------------A--- i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28166983 606 - 42263495 TAGATCTCAGG--------CTTTTTATTTTCAGCTACAGGA-ATCCCCCatttaaaaaattatattaataGCTCTTAGTCACCCAGCATTTCCTATTCACCTTCATTAATTCACAGCTCTATTACATTTCTTCAGGAGACGTATTTCCATAGTTCTGCCTT----TA---TTTATGTTTTT---CTT--ACAG--TTTTTTTGACTGCCATCCACAATTTTTTTGTTTTTTTG------------CTTTATCAGGGATTTTTAC-------TTTGTTAC-TTCC-T--TTTTCCCCCCATAGCT--TTTCATAATTTGCTGGGGTTATATCTGCCTAGGCTTTTAGCTCTCTTACAGATTTGTTTTTAAGACTTCAAACT-TTTCA--TTTATTTTTAGCTCATGATACTTGC--------AAAAGTCTGTACCCTTTTGATTTT-CACTTGCTTCATTGACACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTGGTGAGTGGAG-----TATTTATAATTCAAAAAAA--ATT-TTACTTTTTTGGACATATTTGCTTATAGGTTAAAATCTTTTGTA-TAAATTCCTGGGGGAAAAAATCTTAAC--TTTCTAGGGAATT----GACACT-TTTTTTTAATCATTAAATGCAA--- i canFam2.chr31 C 0 C 0 s equCab2.chr26 28514429 601 - 41866177 TGTATTTCAGG--------CTTTTTATCTTCAGCTACAGAA-TTCCTCCATTCTTTTAATTATGTTCACAGCCCTTAGTCACCCATCACGGCCTTTCTACCTTCCCTAGTTCACAGCTCTATTACATTTCTCCAGGAGATGCATTTCCATAGTTCTGCCTTGTTATAAGTTTTATTTTTTT---CTT--CCAGTTTTTTTTTGATTGCCAACCA-AATTTTTTTG-------G------------CTTTATCAGAGATTTTCACTTTATTGTTTGTCAC-TTCA-T--TTTTTTTCC--TAGCT--TTTCATAATTTACTGCGGTTACA-CCGCCTAAGCTTTTAGTTCTCTTACCAATTTGTTTTTAAGGATTCCAACT-TTTTCATTTTATTTTTAGCTCCTGATCCTTGG--------AAAAGTCTGTACCCTTTTGATTTT-CGCTTGCTTCATCGACACATTCTTGTGTTTTGTTTTCATTTTAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTGGTGAGAGGAATAGTTTATTTGTAATTC--AAAAA--ATT-TTACTCTTTGTGAGGTATTTGCTTAGAGGTT-AAATCTCATGTA-TAAATTCCT--GAAAAAAAATCTTAAA--TTTCTGGAGAGTTAATGGACATT-CTTTT----------------A--- i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41953863 583 + 62548349 AATATTTTGAA--------C----TACCTTCAGCTACAGAA-TTCTCCCATCCTTTTGATTATGGTAACAGTCTTTAGTCACCCAGCACTGCCTGTCCGCCTCCACTAATTCACAACTTTACTAAATTTCCCAAGAGATTGCATTT---------------------AAGTTTAT-TTTTC---CTT--CC----TCTTTTTAATTACCAGCCA-GGTTTTTTTG-------GTTGTTGTTTTTACTTTATTCAGGATTTTCATTTTATGTTTTGTCCT-CTCCAT--TTTTTC-----TAGCT--TTTCATAATTTATTACTGTTATATCTACTTAAGCATTTAGCTACCCTACTGATTTGTTTTTAAGAATTCAGACT-TTTTCATTTTATTTTTAGCTCATGATACTTGA--------AAATGTCTGTACCCTTTTGATTTTTCACTTACTTCATCATCACTTTCTTGTATTTTGTTTATGTTTGAAAATGTCAGAAAGTGAAATTTCTTGCCAGCTTGGTGAGCGAAGTAGtttatttataatttttaaaat--CTT---ACTTTTTGTGAGATATTTGCTTACAGGTTAAAATCTCATGTT-TAAATTTCT--TTGAAAAAACCTAAAAATTTTTTGTGTGGCT----GACTGATTATTT----------------T--- i loxAfr3.scaffold_13 C 0 C 0 e proCap1.scaffold_76270 5717 5460 - 11548 I a score=15538.000000 s hg19.chr4_gl000194_random 187492 43 + 191469 ----AATCATTCTA-TACAACAAT-G--------GGTGCAAAATTTGTATTCCTCTA s panTro2.chr4_random 3134118 40 + 6711082 ----AATCATTCTA-TACAACA------------GGTGCAAAATTTGTATTCCTCTA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42418998 43 + 202140232 ----AATCATTCTA-TACAACAAC-A--------GGTGCAAAATTTGTATTCCTCTA i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 302654 43 + 189746636 ----AATCATTCCA-TACAATGAT-G--------GGTGCAAAATTTGTATTCCTCTA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22829576 40 - 98319150 ------TTATTTTG-TGAAACTAC-T--------GATGC-AATTTTGTATTCATCTA i mm9.chr16 C 0 C 0 s rn4.chr11 73468058 40 - 87759784 ------TTACTCTG-TGAAACCAT-T--------GATGC-AATTTTGTATTCATCTA i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8641915 39 + 24440124 ------TTTTTCTA-TGCCACTAT-T--------AATGT-ACCTTT-TATCACTATA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22020637 41 - 163896628 ------TTGTCATT-CCAAGCAATGT--------GGTGT-AGTATTTTATTCTTCTA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22946102 41 + 161106243 ------CTGTACAA-TACAGCCAT-T--------GATGCAATATTTTTATTCTCCCA i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28167589 49 - 42263495 ------TCATTCTA-TGATATCAT-TCTATATCAGGTACGATATTTGTATTTCTCCA i canFam2.chr31 C 0 C 0 s equCab2.chr26 28515030 40 - 41866177 ------TCATTCTA-TG-CACCAC-T--------GGTGTAATATTTTTATTTCCCTA i equCab2.chr26 C 0 C 0 s proCap1.scaffold_76270 11177 46 - 11548 TTCT--TTTTTTTATTATTATGAC-T--------GAGTGAAAATGTACATTCCCGTA i proCap1.scaffold_76270 I 5460 N 0 s loxAfr3.scaffold_13 41954446 42 + 62548349 ---A--TCGTTCTA-TATAACCAT-T--------GATACAATATTTTTATTTCCCCA i loxAfr3.scaffold_13 C 0 C 0 s echTel1.scaffold_6894 530 15 - 1245 -------------------TGCAT-T--------GGGGAAGAA-------------- i echTel1.scaffold_6894 N 0 N 0 a score=93971.000000 s hg19.chr4_gl000194_random 187535 87 + 191469 CTC--GAGAAATCAT----GAATAT---TTGTTATTAGTTTACTAACATCtaa-atattaatgtat----------------------------------------------------tcaattata-tattattaaaaCACGATTAAGC s panTro2.chr4_random 3134158 89 + 6711082 CTCAAGAGAAATAAT----GAACAT---TTGTTATTCGTTTACTAACATCTAA-ATGTTAATGTAT----------------------------------------------------TCAATTATA-CATTATTAAAACACGATTAAGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419041 89 + 202140232 CTCAAGAGAAATAAT----GAACAT---TTGTTATTAGTTTACTAACATCTAA-ATGTGAATGTAT----------------------------------------------------TCAATTATA-CATTATTAAAACACAATTAAGC i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 302697 93 + 189746636 CTCAAGAGAAATAATTAACGAACAT---TTGTTATTAGTTTACTAACATCTAA-ATGTTAATGTAT----------------------------------------------------TCAATTATA-CATTATTAAAACACAATTAAGC i rheMac2.chr2 C 0 C 0 s mm9.chr16 22829616 82 - 98319150 ATTAGtaaaaataaataacaaatat---ttattatta--------atGACAACTAATGTGTTTTAT----------------------------------------------------TCATCATTA-TATCA----ATTTTTATTTAAT i mm9.chr16 C 0 C 0 s rn4.chr11 73468098 86 - 87759784 ATTAGt-aaaataattaacaaatat---ttattattattt-----aCAATAACTAATGCATTTTAT----------------------------------------------------TCATCCTTATTATTAC---AGTTCACTTTAAT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8641954 82 + 24440124 ATCAGTCGGaataatta--aaatat---tacttaata----------gtttaatattttgttatat----------------------------------------------------tCAATTGCA-TATTTCTAAACCAGTATTAGTT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22020678 77 - 163896628 CTCAAT-GGAAAAAATAATA---AT---TTATTAGTC--------ACATATAC-ATGTTAATGTAT----------------------------------------------------TCAACTACA-CATTA----ATTAAACACTATT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22946143 88 + 161106243 CTTGGGG--AGTAAGTAACAAAGATGT-GTGCCATTAGTT-----GTATCCAC-CTGTGAATGTAT----------------------------------------------------TCAATTAGA-TATTATTAAAACTCCTTTGAAC i bosTau4.chr1 C 0 C 0 s canFam2.chr31 28167638 88 - 42263495 CCGAGGGGAAATAATTAACAACGAT---TTGTTATTAATG-----ACATCTAA-ATGTTAATGTAT----------------------------------------------------TCAATTAGA-TATTATTAAAACACTATTAAGC i canFam2.chr31 C 0 C 0 s equCab2.chr26 28515070 143 - 41866177 CTCGGGAGAAATAATTAAGAAACATTTGTTGTTATTAGTA-----GCATCTAA-ATGTTAATGTATTAAATAATTGAATATTTATTAGATATTCTTATTTCTATTATATCTAATTAGATCAATTAGA-TATTATTAAAACCCTATTAAGT i equCab2.chr26 C 0 C 0 s loxAfr3.scaffold_13 41954488 87 + 62548349 CTCAAG-AAAATAATTAACAAAGGT---TTGTTATTATCA-----TCATCTAA-ATGTTAATATAC----------------------------------------------------TAAATTTTG-CTTTATTAAGACACTATTATGC i loxAfr3.scaffold_13 C 0 I 2198 a score=15880.000000 s hg19.chr4_gl000194_random 187622 25 + 191469 TTAAGAG---GTGGAA-----AAGTA-TA-AAACA s equCab2.chr26 28515213 27 - 41866177 --AACTGGACATAGAA-----ACGCA-TAAAAACA i equCab2.chr26 C 0 C 0 s canFam2.chr31 28167726 27 - 42263495 --AAGTGAACATGGAA-----AAGTA-TAAAAACA i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22946231 30 + 161106243 TTAAGGGGATGTGGAA-----AAGCATTAAAAGCA i bosTau4.chr1 C 0 C 0 s oryCun2.chr14 22020755 21 - 163896628 TTCAC------TAGAC-----AAGAA-AA--AACA i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8642036 28 + 24440124 TTTAT-----CTAGACATAGGAAGCA-TA-CAATA i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73468184 22 - 87759784 TTAAT-----GTGGTC-----AGACa-ta--aata i rn4.chr11 C 0 C 0 s mm9.chr16 22829698 22 - 98319150 TTAAT-----GTGGAC-----AGGCA-TA--GATA i mm9.chr16 C 0 C 0 s rheMac2.chr2 302790 25 + 189746636 TTAAGAA---GTGGAA-----AAGTA-TA-AAACA i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42419130 25 + 202140232 TTAAGAG---GTGGAA-----AAGTA-TA-AAACA i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3134247 25 + 6711082 TTAAGAG---GTGGAA-----AAGTA-TA-AAACA i panTro2.chr4_random C 0 C 0 e loxAfr3.scaffold_13 41954575 2198 + 62548349 I a score=17296.000000 s hg19.chr4_gl000194_random 187647 122 + 191469 A---ACA-AGTGTATAATCTACCTTTATTAATATGAAACA--T--CTTTTTCTCTCCTG-AAAATAAAGATTAACC-AGGGGT-G-----------------------TGCTGGGGC----------GGGAGGGG-------GTGTGTTGGA---------------GGGAGAAAAGC--------------------------------------------------CATGATTTGC-------------- s panTro2.chr4_random 3134272 122 + 6711082 A---ACA-AGTGTATAATTTACCTTTATTCATATGAAACA--T--CTTTTTCTCTCCCG-AAAATAAAGACTAAGC-ACTGGT-G-----------------------TGCTGAGGC----------GGGAGGGG-------GTGTGTTGGA---------------GGGAGACAAGC--------------------------------------------------CATGATTTGC-------------- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419155 122 + 202140232 A---ACA-AGTGTATAATTTACCTTTATTCATATGAAACA--T--CTTTTTCTCTCCTG-AAAATAAAGATTAACC-AGTGGTAA-----------------------TGCTGGGGC----------AGGAGGGG-------GTGTGTTgga---------------gggagaaaagc--------------------------------------------------catgatttg--------------- i ponAbe2.chr3 C 0 I 141 s rheMac2.chr2 302815 112 + 189746636 A---ACA-AGTGTATAATTTACCTTTATTCATACGAAACA--T--CTTTTTCTCTGCTG-AAAATAAAGATTAGCC-AGT-GT-A-----------------------TGCTGGGGC----------GGGAGGGG-------GTGTGctgga---------------gggagaaaagc--------------------------------------------------c----------------------- i rheMac2.chr2 C 0 I 149 s mm9.chr16 22829720 130 - 98319150 CTTTTAA-AGTACATAGTTTTCCATTATTCATGTTAG--------TTTTTTTTCTGATAAAAAATAAGGATTTACC-TTAGAA-A-----------------------TACTTATACAGGGACTA-AAGGAGAGA-------ATGTGTAGAG---------------GGTGAAAAAGG--------------------------------------------------CATAACGTG--------------- i mm9.chr16 C 0 I 131 s rn4.chr11 73468206 123 - 87759784 cttttaa-aatatataattttcttttattaatgttag--------aattttttatGATGAAAAATAAGGATTTACC-TTAGAA-A-----------------------TACTTACAGAAGGACTA-AAGGAGAGA-------GTGT----------------------GTGAAAATGT--------------------------------------------------GATAATGTG--------------- i rn4.chr11 C 0 I 189 s cavPor3.scaffold_34 8642064 143 + 24440124 A----AA-AGTATA-AATTTTCTTGTATTTATACAAC--------TTTTTTACTTTATG-AAAATACATATTCACT-ATTG---------------------------TGCTGAAAAACAGTGTA-AGGGGGAAATATCAtggtttgtagaatttactcttttctatggtataaatac--------------------------------------------------atccatgag--------------- i cavPor3.scaffold_34 C 0 I 97 s oryCun2.chr14 22020776 127 - 163896628 T---AAA-AATTTATAATTTACCTTTGTTCACATAAGACA--TCTATCTTTTTCTCCTG-AAAATAAG-ATTAACC-----AA-T-----------------------TATGTACATACCGACCA-GACGATGGA-------GGATCTGGGA---------------GGAAGAAAAGA--------------------------------------------------GGTGATTTG--------------- i oryCun2.chr14 C 0 I 448 s bosTau4.chr1 22946261 165 + 161106243 A---GGAAAGTATATATTTTCACTTTATTCATATTAGAC---T--TCATTTCTCTTCTG-GAAATAAAGAGCAATc-aatggt-g-----------------------tactggcaaactggcca--ggagagga-------ggaagtgaaa---------------agtcatagagct--------agccc-----atttctgtg-gtgtgaatgctatcatcac-acccaatttga-------------- i bosTau4.chr1 C 0 I 85 s canFam2.chr31 28167753 132 - 42263495 C---AGA-AGTATATAGTTTACCTTTATTCATAATAGACCT-T--TTTTTTCTCTTCTG-CAAATGAAGAGTAGCCTGGTGGT-G-----------------------TACTAGCATACTGACTG--GGGGAGAA-------GAGtgaggaa---------------aggagaaaagc--------------------------------------------------cctgatttac-------------- i canFam2.chr31 C 0 I 131 s equCab2.chr26 28515240 127 - 41866177 A---AAA----GTGTAATTTACCTCTATTCATATTACATGTCT--TTTTTTCTCTCCTA-AAAAT--AGACTAATC-AGTTGT-G-----------------------TCCTGATATACTGACTA--TGGCAGGA-------GAAtagggag---------------aggagaaaagc--------------------------------------------------cctgatttgt-------------- i equCab2.chr26 C 0 I 132 s loxAfr3.scaffold_13 41956773 217 + 62548349 ---AACA-AAAGTATAATTTATCTTTATTCACATCAGGCA-----TCTTTTCTTCCCTG-TAAATAAAGAGCGACC-AGTGGT-Gtgatttgtagagcttgccaattttaatggtgtaaatactcccaccatggt-------caatttcaga---------------tggcaagaagtttaacaatcagctcacgaaatttctgaacatgtaacaatagctctcacaagctgatttt-aggttagcatgaga i loxAfr3.scaffold_13 I 2198 C 0 a score=214028.000000 s hg19.chr4_gl000194_random 187769 98 + 191469 CAATTTCAGCACAAAACTG-AAAATGGTTATTAATCTTT--ACTAGCTA-CAGATATCTTTTAACATATATT--GAAATCTATGACCCTT--AAAAGGAAAC-----------ATAT s panTro2.chr4_random 3134394 99 + 6711082 CAATTTCAGCACAAAACTG-AAAATGGTTATTAATCTTT--ACTAGCTC-CAGATATCTTTTAACATATATT--GAAATCTATGACCCTTA-AAAAGAAAAC-----------ATAT i panTro2.chr4_random C 0 C 0 s mm9.chr16 22829981 100 - 98319150 caaaactgACACAAAACTG-AAAATAATTATTACTCTTT--A-GAGGTC-TAAAAATCTTTGAATATATATT--GAAATCTT----------AAAAAAATtatatatatatatatat i mm9.chr16 I 131 C 0 s rn4.chr11 73468518 87 - 87759784 caacaccaACACAAAACTG-AAAATAATTATTACCCTTT--A-GAGGTC-TAGAAATCTTTGAATATATATT--GAAATCTA----------AAAACAAATA-------------AT i rn4.chr11 I 189 C 0 s cavPor3.scaffold_34 8642304 99 + 24440124 CAGCACTGGCACAAAACCG-AAAGTGATTACTAATCCTT--A-GTGTTC-CAGATATCTTTGAACAAGTATT--GAAATTTATGATACTTAGAAAACAAACC-----------ACAT i cavPor3.scaffold_34 I 97 C 0 s oryCun2.chr14 22021351 93 - 163896628 ---TTCCAGCACAAAACTGAAAAATGGTGATTTTTTTTTTAA-TATATC-CAGAGATACTGAAATGTATGTT--GAAACCTAGGAC------CAAAAAACCC-----------AAAA i oryCun2.chr14 I 448 C 0 s rheMac2.chr2 303076 95 + 189746636 ----ttcagcacaaaactg-AAAATGGTTTTTACTCTTC--ACTAGCTC-CAGATATCCTTTAACATATGTT--GAAACCTACGACCCTTA-AAAAGAAAAC-----------GTAT i rheMac2.chr2 I 149 C 0 s ponAbe2.chr3 42419418 95 + 202140232 ----ttcagcacaaaactg-AAAATGATTATTAATCTTT--ACTAGCTC-CAGATATCTTTTAACATATATT--GACATCTATGACCCTTA-AAAAGAAAAC-----------ATAT i ponAbe2.chr3 I 141 C 0 s bosTau4.chr1 22946511 81 + 161106243 cagcTCCAACACAAAACCG--------TTATTAACTTTT--ACTAGGGCACAGATATCTTTGAACATACATT--GAAGTCTGTGACCCTCA-AA----------------------- i bosTau4.chr1 I 85 I 257 s equCab2.chr26 28515499 102 - 41866177 cagctgcagcacaaaactg-CAACTGGTTATTAATCTTT--ACTGGGTCACAGATATCTTTGAACATGTATGTTGATATCTTTGACCCTTA-CAAAGAAAGC-----------TTAT i equCab2.chr26 I 132 C 0 s canFam2.chr31 28168016 100 - 42263495 cagttccagcaAAAAATTG-AAAATGTTTATTAATTTTC--ACTAGGTCACGGATATCTTTGAACATATACA--AATCTCAATGAACCTTA-AATAAAAAGC-----------TTAT i canFam2.chr31 I 131 C 0 s loxAfr3.scaffold_13 41956990 102 + 62548349 cagctccaacataacactTAAAAATAATCAGtaaccttc--attgggtcacagatatctttgaacatatatt--gaaagctatgactattaaaaaaaaaagt-----------gtat i loxAfr3.scaffold_13 C 0 C 0 a score=56293.000000 s hg19.chr4_gl000194_random 187867 67 + 191469 ATACAGATTTTGACA------------------------------------------AAAC---TTTGCA--------------GTTCCACTCATGGATCCTTGTATAAGAATCCCTTTTAT---ATGT s panTro2.chr4_random 3134493 67 + 6711082 ATATAGATTTTGACA------------------------------------------AAAC---TTTGCA--------------GTTCCACTCATGGATCCATGTGTAAGAATCGCTTTTCT---ATGT i panTro2.chr4_random C 0 C 0 s mm9.chr16 22830081 95 - 98319150 acacatatatgtatatgtatgtatgtatgtatgtatgtatatataATTTTATTTTAAAAAT---TCTCCA--------------AACCCACTAACAGATTTC--------------CTTCAT---ATGT i mm9.chr16 C 0 C 0 s rn4.chr11 73468605 64 - 87759784 ACTCatatattattttttttaaa----------------------------------aaatCCCTCTCCA--------------GATCCACTAACAGATTTC--------------CTTCAT---ATGT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8642403 54 + 24440124 ACACAGATCTTGAC-------------------------------------------AAAC---TGGACA--------------GTTCTACTGACAGGTTCC------------CTCTTCTT---GTGT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22021444 73 - 163896628 TCTCATATATAGATTTTAACAAA----------------------------------AAGT-----TATA--------------GTTCTATTCACTGATCACAGTATAAGA---ACCTGCATGTAATAT i oryCun2.chr14 C 0 C 0 s rheMac2.chr2 303171 67 + 189746636 ATACAGATTTTGACC------------------------------------------AAAT---TTTGCC--------------ATTCCGCTCATGGATCCCTGTATAAGAATCCCCTTTCT---ATGT i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42419513 67 + 202140232 ATACAGATTTTGACA------------------------------------------AAAC---TTTGCA--------------GTTCCACTCATGGATCCCTGTATAAGAATCCCCTTTCT---ATGT i ponAbe2.chr3 C 0 C 0 s bosTau4.chr1 22946849 64 + 161106243 aaacagattttgaca------------------------------------------aaag---TTTG-----------------TTCTACAAATGAATCTCTGTATAAAAGTCCCTTTTCT---AAGT i bosTau4.chr1 I 257 C 0 s equCab2.chr26 28515601 54 - 41866177 ATACAGATTTTGACA------------------------------------------AAAC---TTTGCA--------------GTTCCACCCATG-------------GAATCCTCTTTTG---ATGT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28168116 59 - 42263495 ATACAGATTTTGACA------------------------------------------AGGC-----TGCC--------------ATTCTACCCATGGATCCCTGCATAAGAATTCCCTTT--------- i canFam2.chr31 C 0 I 398 s loxAfr3.scaffold_13 41957092 80 + 62548349 gtacagat-ttgaca------------------------------------------aaaa---tttgcacacaaATCATCTCCATTTCACCAGTGCACCCTTTTACAAGAACCTCCTTTTT---ATGT i loxAfr3.scaffold_13 C 0 C 0 a score=103823.000000 s hg19.chr4_gl000194_random 187934 50 + 191469 GTGTTTGCAATTTAAAGAGTTCAGACTTTATGATTCACAGGTGACAATTA s panTro2.chr4_random 3134560 50 + 6711082 GTGTTTGCAATTTAAAGAGTTCAGACTTTATGATTCACAGGTGACAACTC i panTro2.chr4_random C 0 C 0 s mm9.chr16 22830176 39 - 98319150 TTAATTGTAATTGCAAAGGTTC--ATACTAGGATT---------CAACTT i mm9.chr16 C 0 C 0 s rn4.chr11 73468669 39 - 87759784 TCAACTGTAATTTTAAGAGTTC--ATACTAGGATT---------CAGTTT i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8642457 50 + 24440124 GACATTGTAATTGAAAATATTTGGACATTATAATTCACTAATGACAATTT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22021517 50 - 163896628 ATACTTATAATTTAGATGGTTTAGAATTGATGATTATCAGGTGACAATTT i oryCun2.chr14 C 0 C 0 s rheMac2.chr2 303238 50 + 189746636 GTGCTTGTAATTTAAAGGGTTCAGAGTTTACGATTCACAGGTGACAACTA i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42419580 50 + 202140232 GTGTTTGCAATTTAAAGAGTTCAGACTTTATGATTCACAGGTGACGACTA i ponAbe2.chr3 C 0 C 0 s bosTau4.chr1 22946913 50 + 161106243 GTATTTGTAATTTAAAGGGTTTAATCATTATGATTTATAAATGATAATTT i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28515655 50 - 41866177 GTACTTGTAATTTAAAGGGTTCAGAATTTAGGATTCACAGATGCTCATTT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28168573 49 - 42263495 GTACTTATTATTTAAAGGGTTCATACTTTATGATTTACGGGTGA-AATTT i canFam2.chr31 I 398 I 539 s loxAfr3.scaffold_13 41957172 43 + 62548349 ------GTGGTGGTAAAGGTTTAGAGTTC-TCATGTACAGGTGATAATTT i loxAfr3.scaffold_13 C 0 C 0 a score=127069.000000 s hg19.chr4_gl000194_random 187984 55 + 191469 ATGATTTAAAATCATAACTTAGGCTTTTATAATTTGGGAGTC--CGGTGTTTAACTG s panTro2.chr4_random 3134610 55 + 6711082 ATGATTTAATCTCAACACTTAGGCTTTTATAATTTGGGAGTC--AGGTGTTTAACTT i panTro2.chr4_random C 0 C 0 s mm9.chr16 22830215 57 - 98319150 GTCATTTAATTTCAACACAGTGACTTTTATAATTCGTGAGCTGCCAGCATTTCACTG i mm9.chr16 C 0 I 259 s rn4.chr11 73468708 57 - 87759784 GTCATTTTATTTCAGCACTGTGACTTTTATAATTTGTGAGCTGCCAGCGTTTCACTG i rn4.chr11 C 0 I 11 s cavPor3.scaffold_34 8642507 41 + 24440124 ATCATTTGATTTCTATATTCTTGCTTTTATAATTTGGGA----------------TG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22021567 53 - 163896628 ATCATTTAATTTCAATACTTTGGCTTTCATAATTTGGTAGTT--CAATATGGAAC-- i oryCun2.chr14 C 0 C 0 s rheMac2.chr2 303288 55 + 189746636 ATGCTTTAATCTCAACACTTGGGCTTTTATAATTTGTGAGTC--AGGTGTTTAACTG i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42419630 55 + 202140232 ATGATTTAATCTCAACACTTGGGCTTTTATAATTTGGGAGTC--AGGTGTTTAACTG i ponAbe2.chr3 C 0 C 0 s bosTau4.chr1 22946963 55 + 161106243 ACTATTTAATCTCAACAGTTTGCCTTTCATATTTTGGGAGCC--AGATATTTAACTG i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28515705 55 - 41866177 ATCATTTAATCTGAAGACTTTGGCTTTTATAATTTGGGAGCC--AGATATTTCTCTG i equCab2.chr26 C 0 C 0 s canFam2.chr31 28169161 55 - 42263495 ACCTTTCAATCCCAACACTTTCACTTTCATAATTTGGGAGCC--AGATATTAAACTG i canFam2.chr31 I 539 C 0 s loxAfr3.scaffold_13 41957215 42 + 62548349 ----------CTTATTAAATTGACTT--ACAGCCTGGGAACA--GGATGTTT-ACTG i loxAfr3.scaffold_13 C 0 C 0 a score=-25107.000000 s hg19.chr4_gl000194_random 188039 87 + 191469 CTGTAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTGCTTCT--TCTCAGAGA----AACTTAGGAGCTAAGACCAGGGAAATGTCCCTTGGTGTACA------ACACACCTCTTCTTTCT s panTro2.chr4_random 3134665 91 + 6711082 CTGTAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTGCTTCT--TCTCAGAGCAGTTAATTTTCCTTCTCAGACCAGGAAAATGTCCCTTGGTGTGCA------ACACACCTCTTCTTTCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419685 82 + 202140232 C-----TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTGCTGCT--TCTCAGAGA----AACTTAGGAGCTAAGACCAGGGAAATGTCCCTTGGTCTGCA------ACACACCTCTTCTTTCT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303343 87 + 189746636 CTGTAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTGCTTCT--TCTCAGAGA----AACTTAGGAGCTAAGACCAGGGAAATGTCCGTTGGTCTGCA------ACACACCTCTTCTTTCT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22830531 87 - 98319150 TTGTGGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCACAGCA--TCTCAGAGG----GCTTATGAGGGACCACCCTAGGAACTCTGCCTTGATGGTCA------GTGTGCCTCTTCCTCCC i mm9.chr16 I 259 C 0 s rn4.chr11 73468776 264 - 87759784 gtgtagcagagttgacagaatgcttatctaacaagtgttgggttctatcagtagatgcacatcactcaggtattactgcaagctatgataatcccagaaattagaaggCAAACTCTGTTTCAAAATACAAAACTAAAACTTACAAAAACCAAAAGCCTAATCAATCAGATGGTTGTTGCGGCATTAACCACAATATCTCTCAGAAG----GCTTCTGAGAGACCACCCTAGGAAATCTGCCTTGACGGCCA------GTGTACCTCTTTATCCC i rn4.chr11 I 11 C 0 s cavPor3.scaffold_34 8642548 73 + 24440124 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATTAACAACT-----TCTCAGAG-----------ACAGGATTTCTCTGGGAAATACAGTTTGATCACT-------GAGCTCCACATTTTTGG i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22021620 63 - 163896628 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACAACTACT--TCTCAAGGA----AAAT--TGGGGATTATTCAGAGAAATGTACCTTG---------------------CCTCTTCCT i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22947018 90 + 161106243 CACAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTGTACTT--CTGCAGAGA----AACTAAGCAACTGTA-AAAAGAAG--GGGCCTTCCTCTCCAAATAGTATATTCCTATTCCTCCT i bosTau4.chr1 C 0 I 775 s equCab2.chr26 28515760 89 - 41866177 CAGCACCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTGCATTT--CCTCAGAGA----GAGTTAGGAACAGT--CCAGGAAG--GGGCCTTGGTCTCCAGACAGCATGCTCCTCTTCCTCCT i equCab2.chr26 C 0 I 1 s canFam2.chr31 28169216 88 - 42263495 CAGCATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTGTATTC--CCTCAGCAA----AACTTAAGAATTGT--TGGGGAAAATGTGCCTTGGTCTGCAAATAGCATGCTTCTCT---TCCT i canFam2.chr31 C 0 I 1 s loxAfr3.scaffold_13 41957257 90 + 62548349 CAGTGTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-TGCAACC--CCTCAAGGA----AACTCAAGAATTGT--ATAGGGAAAGGTGCCATGGTTTCCAAACAGCATACTTCTCTTCTTCCT i loxAfr3.scaffold_13 C 0 C 0 a score=57077.000000 s hg19.chr4_gl000194_random 188126 44 + 191469 -GAACATATCGTATAAGAAGCTAACTT--TGTCTCAAAGTTTATATG-- s panTro2.chr4_random 3134756 44 + 6711082 -GAACGTACCATATAAGACGCTAACTT--TGTCTCAAAGTTTATATG-- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419767 43 + 202140232 -GAACATATCGTATAAGAAGCTAACTT--TGTC-CAACGTTTATATG-- i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303430 44 + 189746636 -GAACATGTTGTATAAGAAACTAACTT--TGTCTCAAAGTTTATATG-- i rheMac2.chr2 C 0 C 0 s mm9.chr16 22830618 44 - 98319150 -AAAACGCAGAAGGAGTGAGCTATTTC--TGTTTCAAGGGTTATCTG-- i mm9.chr16 C 0 I 2 s rn4.chr11 73469040 44 - 87759784 -AAACTGCCGTACTAGCAAACTACTTC--TGTTCCCAGGGTTATCTG-- i rn4.chr11 C 0 I 2 s cavPor3.scaffold_34 8642621 44 + 24440124 -GAACATATGTTAAAACAAACTACTTT--CACTTCAAATTCTGTATG-- i cavPor3.scaffold_34 C 0 I 2 s oryCun2.chr14 22021683 44 - 163896628 -GAATACCCCATGTCAAAAGATAACTG--TATTCTAAGAATTATATG-- i oryCun2.chr14 C 0 I 367 s equCab2.chr26 28515850 44 - 41866177 -AGGCATGCCAGGTAAAGAGCTAATTG--TGTTTCAATAACTATGTA-- i equCab2.chr26 I 1 I 2 s canFam2.chr31 28169305 39 - 42263495 -AAGCACACCATAATAAAAGCTACTTT--TGTTTCAGTGatt------- i canFam2.chr31 I 1 I 2 s loxAfr3.scaffold_13 41957347 49 + 62548349 GAAGTACACCACGTAAAAAGCTAATTTTCTGTTTCAAGGATTATATGTG i loxAfr3.scaffold_13 C 0 C 0 e bosTau4.chr1 22947108 775 + 161106243 I a score=4680.000000 s hg19.chr4_gl000194_random 188170 55 + 191469 AC-TTTTGCATTTGCAGTTACTAGCTA-TTTTCTTTTGGAACT---GTTGGACTTggaga s panTro2.chr4_random 3134800 54 + 6711082 AC-TTTTGCATTTGCA-TTACTAGCTA-TTTTCTTTTGGAACT---GTAGGACTTggaga i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419810 55 + 202140232 AC-TTTTGCATTTTCAATTACAAGCTA-TTTTCTTTTGGAACt---gtaggactgggaga i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303474 54 + 189746636 AC-TTTTGCATTATCAGTTACTAGCTA-TTCTCTTTCGGAATG---GTAGGA-Tgggaaa i rheMac2.chr2 C 0 C 0 s mm9.chr16 22830664 58 - 98319150 -A-CTTTATATTTAAAATTACTAGCTGTTTTTCATTTGAACGTAAAGGAAGGGACTAGGA i mm9.chr16 I 2 C 0 s rn4.chr11 73469086 57 - 87759784 -A-CTTTATATTTAAAATTACTAGTTG-CTTTCATTTGAAAATAAAATAGGGTAGGGAAT i rn4.chr11 I 2 C 0 s cavPor3.scaffold_34 8642667 55 + 24440124 -ATTTTTACCTTTTAAATTGTTAGCTA-TCTTCTTTTGGGCCt---gtaggggagtgaag i cavPor3.scaffold_34 I 2 C 0 s oryCun2.chr14 22022094 36 - 163896628 AG-TTTTAGATTTTCAATTACta-----------------------ggagggaagagaag i oryCun2.chr14 I 367 C 0 s equCab2.chr26 28515896 33 - 41866177 AT-TTTTGTACCT----CGACTATTTA-TCTACTTTGGG--------------------- i equCab2.chr26 I 2 C 0 s canFam2.chr31 28169346 19 - 42263495 at-tttcatttat----------ttta-ttt----------------------------- i canFam2.chr31 I 2 I 853 s loxAfr3.scaffold_13 41957396 39 + 62548349 AT-TTTGGCACTCCAAGTCACTGGCTA-CCTGGTTTTGGAA------------------- i loxAfr3.scaffold_13 C 0 I 1706 e bosTau4.chr1 22947108 775 + 161106243 I a score=68318.000000 s hg19.chr4_gl000194_random 188225 70 + 191469 actttccctctaccctctgaagg---------------------------------------------------------------------tatgataactgagtctattgaataaatggataacaggcatgtcaaaa s panTro2.chr4_random 3134854 70 + 6711082 cctttccctctaccctctgaagg---------------------------------------------------------------------tatgataactgagtctattgaataaatggataacaggcatgtcaaaa i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419865 70 + 202140232 actttccctctaccctctgaagg---------------------------------------------------------------------tatgataactgagtctatgaaataaatggataacaggaatgtcaaaa i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303528 139 + 189746636 actttccctctgccctctgaaggtGATATGATAACTGATATCTATGAAATAAACGGATAACAAGCACGTCGAAAGAAGAcctctgaaggtgatatgataactgagtctctgaaataaacggataacaggcatgtcgaaa i rheMac2.chr2 C 0 C 0 s mm9.chr16 22830722 61 - 98319150 ACTTTCCTCCTAACCTCTGAGGA---------------------------------------------------------------------TTCCATGACCCAGCCTAGATAATAAGCTGACAAGAGGC--------- i mm9.chr16 C 0 C 0 s rn4.chr11 73469143 61 - 87759784 ACTTTTCTCCTAACCTCTGAGAG---------------------------------------------------------------------TTCCATGACCCAGCCTGGATGATAAGCTGACACGAGGC--------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8642722 70 + 24440124 actttccatctagtctcccaggg---------------------------------------------------------------------tttgaaaactgagccaacagaataaaccaataacaggcagattgaca i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22022130 70 - 163896628 acttttcctttaccctctgagcg---------------------------------------------------------------------tttgataactgagtctatgaaatcaattggcagcaggcagattcatg i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28515929 67 - 41866177 ACTCTTTCTCTACATTATTTCTA---------------------------------------------------------------------TCAGATAA---AGTGAATAAAGAACACCTTTTACAGGCATATCAAAA i equCab2.chr26 C 0 I 642 e bosTau4.chr1 22947108 775 + 161106243 I e loxAfr3.scaffold_13 41957435 1706 + 62548349 I e canFam2.chr31 28169365 853 - 42263495 I a score=15265.000000 s hg19.chr4_gl000194_random 188295 69 + 191469 gaagaaaatgtgtacacatttattacacgcatgggg--------gaatcacaggaaagaaaagtg---------gaatca----------aaaaca s panTro2.chr4_random 3134924 79 + 6711082 gaagaaaatgtgtacacatttattacacgcatgggg--------gaatcacaggaaagaaaagtg---------gaatcaaaaacaaaataaaaca i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42419935 69 + 202140232 gaagaaaaggtatacacatttattacatgcatgggg--------gaatcacaggaaagaaaagtg---------gatgca----------aaaaca i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303667 69 + 189746636 gaagaaaagttatacacatttattacatgcatgggg--------gaatcacgggaaaGAAAATTG---------GATGTA----------AAAACA i rheMac2.chr2 C 0 C 0 s mm9.chr16 22830783 30 - 98319150 --------------------------------------------GCAAGACAGGAAAGAAAAGAGCCACAAGCA---------------------- i mm9.chr16 C 0 I 48 s rn4.chr11 73469204 21 - 87759784 --------------------------------------------ACAAGACAGGGAAGAAAAGAG------------------------------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8642792 56 + 24440124 ggaggaaag--------acgtac-acatgtgtaatgtgcatggggcatcacagaaaagaaaatta------------------------------- i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22022200 54 - 163896628 ggggaaaag---cacaaacttactacttttccagga--------aagtcacagggaagagaagtg------------------------------- i oryCun2.chr14 C 0 I 7 e bosTau4.chr1 22947108 775 + 161106243 I e loxAfr3.scaffold_13 41957435 1706 + 62548349 I e canFam2.chr31 28169365 853 - 42263495 I e equCab2.chr26 28515996 642 - 41866177 I a score=30080.000000 s hg19.chr4_gl000194_random 188364 60 + 191469 aaacaaaacaaacaaaacaccaccaagaaaaaaccccagtgagatttaggagcttatagg s panTro2.chr4_random 3135003 59 + 6711082 aaacaaaacaaacaaaacaccaccaag-aaaaaccccagtgagatttaggagcttatagg i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420004 50 + 202140232 ---------aaacaaaacaccaccaag-aaaaaacccagtgagacttaggagcttatagg i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303736 60 + 189746636 GAACAAAACAAACAAAACATCACCAAGAAAAAACCCCAGTTAGATTTAGGAGCTTATAGG i rheMac2.chr2 C 0 C 0 s rn4.chr11 73469225 33 - 87759784 ----------------------C-----CACAAGTCTTGAGGAAGTGAGCAACTTGTAGG i rn4.chr11 C 0 I 29 s cavPor3.scaffold_34 8642848 37 + 24440124 ------------------atgac-----caaaaacccagtgagatttaggggcccttatt i cavPor3.scaffold_34 C 0 I 5 s oryCun2.chr14 22022261 32 - 163896628 ----------------------------aaaagagccagtgagatttgggagcttttata i oryCun2.chr14 I 7 I 2 e mm9.chr16 22830813 48 - 98319150 I e bosTau4.chr1 22947108 775 + 161106243 I e loxAfr3.scaffold_13 41957435 1706 + 62548349 I e canFam2.chr31 28169365 853 - 42263495 I e equCab2.chr26 28515996 642 - 41866177 I a score=36153.000000 s hg19.chr4_gl000194_random 188424 140 + 191469 gaaggcaggaggaagaatgtaggaaac------------ttaggggagagcaaatgact------tttgt-------gaaagatgacca--gacccttaggagaatagatgata-----------gtttgtggcagtctgtcttagtgtggtatggacccttagtcttgtctcctgtg s oryCun2.chr14 22022295 140 - 163896628 cacttcttgggaaagagagcaggaagc----------acttgggagggagtaaatgatt------tGGTGTGGGTTTGGGAGAAGGGTGGGGACCTTGAGTGAGTTCTTTGAGGCAAAGGTGGCAGTTTGTGACAAT----------------------GTTTgtcttctctcttagg i oryCun2.chr14 I 2 C 0 s cavPor3.scaffold_34 8642890 143 + 24440124 -----ttaggtaggggaaaaaaaaaaagaaagaaaaaggatgaaggcaatgtgagcatcaatccattatg-------gaaagatggatg----tctttagaaatgcagacaatg-----------acttgtgacaaa--------gtCAACATTTGACTTCTAGTCCCCTCTACAATG i cavPor3.scaffold_34 I 5 C 0 s rn4.chr11 73469287 85 - 87759784 ------------------------------------------CAGGGGAGGTAA-----------------------GCAAGATGGGTG--GACCTTTAGAAAAATACATGATG---------------GTGAGAAA-----------CACTGCCGGAGTCTAGAGTTTCTGAGAATA i rn4.chr11 I 29 C 0 s mm9.chr16 22830861 121 - 98319150 -----gatggcagggtatgtaagcaac-----------tttagaggcgagtgaataatt------tggtg-------gcaagatgagtg--gacctttagaaaaatacctgatg---------------gtaagaaa-----------caCTGCTGGAGTCTAGACTTTCCAGGAATG i mm9.chr16 I 48 C 0 s rheMac2.chr2 303796 128 + 189746636 GAAGGCAGGAGGGAGAATGTAGGACAC------------TCAGTGGGGAGGAA----------------G-------GAAAGATGGCCA--GACTCTTGGCagagtagatgata-----------gtttgtgaca--ctgtcttggtgtggtgtggactctttgtcttctctcctgtg i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42420054 140 + 202140232 gaaggcaggagggagaatgtaggaaac------------ttaggggagagcaaatgact------tttgg-------gaaagatgacca--gacccttagcagaatagatgata-----------gtttgtgacagtctgtcttggtgtggtatggactcttagtcttgtctcctgtg i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3135062 140 + 6711082 gaaggcagggggaagaatgtaggaaac------------ttaagggagagcaaatgact------ttttg-------gaaagatgacca--gacccctaggagaatagatgata-----------gtttgtggcagtctgtcttggtgtggaatggactcttagtcttgtctcctgtg i panTro2.chr4_random C 0 C 0 e bosTau4.chr1 22947108 775 + 161106243 I e loxAfr3.scaffold_13 41957435 1706 + 62548349 I e canFam2.chr31 28169365 853 - 42263495 I e equCab2.chr26 28515996 642 - 41866177 I a score=15.000000 s hg19.chr4_gl000194_random 188564 57 + 191469 atatgaggagtcaatt---ttccctggctgatg--------------------aaactcctaggaaggagatgaatgtct s canFam2.chr31 28170218 74 - 42263495 ACAAAAAAAATCACTTTAATTTCATTGCTGACAAGTTTGCGAATTTAAATCTCAACTTCCTGTGATGA------ATTTAT i canFam2.chr31 I 853 I 5 s oryCun2.chr14 22022435 41 - 163896628 atacaagc----catc---ttccctggttaat---------------------gaaactcagggggagg----------- i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8643033 49 + 24440124 TTATAAGT------TC---ATCTCTGATTGAC---------------------AAAATCCTGGGTAAGAGTTTGATGTC- i cavPor3.scaffold_34 C 0 I 2 s rn4.chr11 73469372 21 - 87759784 ATA--------------------------------------------------ATGGTCCTGGAGAGAGGA--------- i rn4.chr11 C 0 I 542 s mm9.chr16 22830982 22 - 98319150 ATA--------------------------------------------------AAGGTCCTGGATGGAGGAT-------- i mm9.chr16 C 0 I 557 s rheMac2.chr2 303924 57 + 189746636 atatgaggagttaatt---ttccctggctgatg--------------------aaactcctaggaaggAGATGAGTGTCT i rheMac2.chr2 C 0 C 0 s ponAbe2.chr3 42420194 57 + 202140232 atatgaggagtcaatt---ttccctggctgatg--------------------aaactcctaggaaggagatGAATCTCT i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3135202 57 + 6711082 atatgaggagtcaatt---ttccctggctgatg--------------------aaactcctaggaaggagatGAATGTCT i panTro2.chr4_random C 0 C 0 e bosTau4.chr1 22947108 775 + 161106243 I e loxAfr3.scaffold_13 41957435 1706 + 62548349 I e equCab2.chr26 28515996 642 - 41866177 I a score=133252.000000 s hg19.chr4_gl000194_random 188621 53 + 191469 ttgtgCTGACAAGACAGTATCTTGAAGTTTTGATTTCCAATTCAGTTCTAAAT s panTro2.chr4_random 3135259 53 + 6711082 CTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCAATTCAGTTCTAAGT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420251 53 + 202140232 TTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCAATTCAGTTCTCAAT i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303981 53 + 189746636 TTGTGCTGACGAGACAGTATCTCAAAGCTTTGTTTTCCAACTCAGTTCTAAAT i rheMac2.chr2 C 0 C 0 s mm9.chr16 22831561 53 - 98319150 TTGTGCTGACAAGACAGTCTCTTATAGCTTTGTATTCCAGTTCCGTTCTAAAT i mm9.chr16 I 557 C 0 s rn4.chr11 73469935 42 - 87759784 -TGTGCTGACAAGAC----------AGCTTTGTATTCCAACTCCGTTCTAAGT i rn4.chr11 I 542 T 584 s cavPor3.scaffold_34 8643084 20 + 24440124 GTAAGTGGA----------------AGATCTGACTT----------------- i cavPor3.scaffold_34 I 2 I 615 s oryCun2.chr14 22022476 19 - 163896628 ----gttgatg--------------acaattgagttg---------------- i oryCun2.chr14 C 0 I 597 s bosTau4.chr1 22947883 53 + 161106243 TTGTGCTGACAGGACAGTATCTTGGGGCTTTGTTTTCCAAGTCATTTCTAAAT i bosTau4.chr1 I 775 C 0 s equCab2.chr26 28516638 53 - 41866177 TTGTGCTGACATGACAGGATCTTAGGGCTTTGTTTTCCAAGTCAGTTCTAAAT i equCab2.chr26 I 642 C 0 s canFam2.chr31 28170297 53 - 42263495 TTGTGCTGACAAGACAGTATCTTGGGGCTTTGTTTTCCAAGTCAGTTCTAAAT i canFam2.chr31 I 5 C 0 s loxAfr3.scaffold_13 41959141 53 + 62548349 TTGTGCTGACAGGACAGTATCTTGGAACTTTGTTTTCCAACTCAATTCTAAAT i loxAfr3.scaffold_13 I 1706 C 0 a score=318773.000000 s hg19.chr4_gl000194_random 188674 87 + 191469 CTGCAGTGTATAAAAATCTCCTCATCATGCTTTGGATGTTATGGTAGATAAATGGTATCTTTACAAAGATACATTCATTCTGGTATT s panTro2.chr4_random 3135312 87 + 6711082 CTGCAGTGTATAAAAATCTCCTCATCATGCTTTGGATGTTATGGTAGATAAATGGTATCTTTAAAAAGATACATTCATTCTGGTATT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420304 87 + 202140232 CTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGAtacattcattctggtact i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 304034 87 + 189746636 CTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT i rheMac2.chr2 C 0 I 578 s mm9.chr16 22831614 87 - 98319150 CTGTGGAGTATCAAAGTCTAGCCATTATGCTTTGGGTGTTATAGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGCTATT i mm9.chr16 C 0 T 650 s rn4.chr11 73469393 34 - 87759784 CTG------ATAACAATCGGGCAG--------------------------------------ACAAGGGGACTTTCAA--------- i rn4.chr11 T 584 C 0 s cavPor3.scaffold_34 8643719 69 + 24440124 CTGGAGTGCAGCAGTCTCTTCTCATTATGCAATGAATGTTATCATAGATAAATGGTATCTTCACAAAGA------------------ i cavPor3.scaffold_34 I 615 T 661 s oryCun2.chr14 22023092 87 - 163896628 CGGCTGTGTATCAATGTCTCTTCATTATGCTCTGGATGCTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT i oryCun2.chr14 I 597 T 684 s bosTau4.chr1 22947936 87 + 161106243 CTGCAGTATATCAAAGTCTCTTCATTATGCTTTGGATGTTATGGTAGAAAAATGGGATCTTCACAAAGATGCATTCATTCTCCTATT i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28516691 87 - 41866177 CTGCCTTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT i equCab2.chr26 C 0 T 849 s canFam2.chr31 28170350 87 - 42263495 CTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT i canFam2.chr31 C 0 T 601 s loxAfr3.scaffold_13 41959194 87 + 62548349 CTGCAATGTTTCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATTGTATCTTCACAAAGATACATTCATTCTGGCATT i loxAfr3.scaffold_13 C 0 T 427 a score=10197.000000 s hg19.chr4_gl000194_random 188761 29 + 191469 GAAAATTCCTTTTGGAGGATCTCTCTTGA s panTro2.chr4_random 3135399 29 + 6711082 GAAAGTTCCTTTTGGAGGATCTCTCTTGA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420391 27 + 202140232 gaaagctcattttggaggg--tctcttga i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22831051 16 - 98319150 GAAAGCTTCTACTGGG------------- i mm9.chr16 T 650 C 0 s rn4.chr11 73469427 16 - 87759784 GAACACTCCTGTTGGA------------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643127 16 + 24440124 GACTGCTTCTCTCAGA------------- i cavPor3.scaffold_34 T 661 C 0 s oryCun2.chr14 22022495 21 - 163896628 --------cttttggagggtctgccttgg i oryCun2.chr14 T 684 C 0 s rheMac2.chr2 304699 28 + 189746636 -AAAGTTCCTTTTGGAGGATGTCTAttta i rheMac2.chr2 I 578 C 0 s bosTau4.chr1 22948023 29 + 161106243 GAAAATGCCTACTTAAAATTCTCTGTGGA i bosTau4.chr1 C 0 T 616 e loxAfr3.scaffold_13 41959281 427 + 62548349 T e canFam2.chr31 28170437 601 - 42263495 T e equCab2.chr26 28516778 849 - 41866177 T a score=44023.000000 s hg19.chr4_gl000194_random 188790 80 + 191469 GGAACGTAAAGGGAGTGCAGAGAAAGCATGt-cccgcatttgttg--tttttcaaatattttcagttcgatgtaatcggtaca s panTro2.chr4_random 3135428 80 + 6711082 GGAACGTAAAGGGAGTGCAGAGAAAGCATGt-cccgcagttgtta--tttttcaaatattttcagttctatgtaatcagtaca i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420418 79 + 202140232 ggaaggtaaagggagtgcagagaaagcatgt-cccgcatttgttg--tttttcaaatattttcagttcgatggaatcagt-ca i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22831067 44 - 98319150 -------------------------------------ATGTCTCA--TTGTTAAAAGCCTTTCCATTGGAAGTAACTTGCATA i mm9.chr16 C 0 C 0 s rn4.chr11 73469443 44 - 87759784 -------------------------------------ATGTCTCA--tttttaaaatgtcttaagttggaagagatttgcgta i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643143 44 + 24440124 -------------------------------------ACTGGTTG--CTTTTTGAATGCATACAGCCAGAAGTAATTATTATT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22022516 70 - 163896628 gggattcagagaaagct----------tcgt-tccacatttgctg--tttttcaaatgtctacactttgtacttagcaacata i oryCun2.chr14 C 0 C 0 s rheMac2.chr2 304727 78 + 189746636 ggaaggtaaagagagctcagagaaa--atgt-cccgcatttgtcg--tttttcacatattttcagtttgatgtaatcagtaca i rheMac2.chr2 C 0 C 0 s eriEur1.scaffold_192107 460 83 + 1002 GGCAGGCAAAGGGAGTTCAGAGAAAGCCTCTGCctgcatttgttgtttttttcaaatgCTTATAGCACAAAATAATCAGTATA i eriEur1.scaffold_192107 N 0 N 0 e bosTau4.chr1 22948052 616 + 161106243 T e loxAfr3.scaffold_13 41959281 427 + 62548349 T e canFam2.chr31 28170437 601 - 42263495 T e equCab2.chr26 28516778 849 - 41866177 T a score=37031.000000 s hg19.chr4_gl000194_random 188870 35 + 191469 ccaaagcaatccattta-ggactggcatttcctgaa s rheMac2.chr2 304805 35 + 189746636 cgaaagcaatacattta-gggctggcatttcctgaa i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22022586 35 - 163896628 tcaaggtggcatatttt-ggtgtggcatttcctaaa i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8643187 35 + 24440124 CCCAAGTTAAATATTTTCAGCGCAGCATTTCCT-CA i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73469487 35 - 87759784 ctgtagtaccacatttt-ggggtgacactttctgga i rn4.chr11 C 0 C 0 s mm9.chr16 22831111 35 - 98319150 CCATAGTACCTCATGCT-GGGGTGACACTTCCTGGA i mm9.chr16 C 0 C 0 s ponAbe2.chr3 42420497 35 + 202140232 ccaaagcaatccactta-aggctggcatttcctgaa i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3135508 35 + 6711082 ccaaagcaatccattta-ggactggcatttcctgaa i panTro2.chr4_random C 0 C 0 e bosTau4.chr1 22948052 616 + 161106243 T e loxAfr3.scaffold_13 41959281 427 + 62548349 T e canFam2.chr31 28170437 601 - 42263495 T e equCab2.chr26 28516778 849 - 41866177 T a score=195050.000000 s hg19.chr4_gl000194_random 188905 193 + 191469 caccttcaGAACTCTTTT-TATCCCATGTTATTTCTATGAGATCACGTGATTTA-AGACCAACTTTTACTTGCCACTTAC--ATATATATTGAAAAGGCAAACTTTCCTTT-TGTAGTTTGCTAATTTTGGCAAAGTAC------TTTAAAAAAAGTTAAATTAAATGAGTAAGTGAAATTTTCTGTTCTA-----TTGTTTTGAAAAC- s bosTau4.chr1 22947436 177 + 161106243 CAATTTCGGGACTCCTTTTGACTA------ATTTCTATCAGATAATGTGACTAAGAGAGCAACTG-----------GT-----GGTATATTGGAAAAGCAAGTTATTCTTTTCATATTTTGATAATTTTGTCAAAGTAC------AAAATTATAAGTTAAATTAAGTGAACATCTGAAAATTTCGGCTCTA-----TTGTTCTAAAAGTA i bosTau4.chr1 T 616 C 0 s canFam2.chr31 28169836 173 - 42263495 ---CTTTGAGATTCTTTGTTTCTA-----TATTTCTATCAGAAAATGTGAATAA-AAAATATCTT---------ACTTGC--AGGTATATCAAAATGACAGATTTTTCTTTTCATATTTTGATGATTTTGTCAAAATAC------AAAATTGTAAGTTAAATTTAGTGAATATCTGAA--TTTCTGACCTA-----TTGTTATAA----A i canFam2.chr31 T 601 C 0 s equCab2.chr26 28515929 174 - 41866177 ----------ACTCTTTCTCTACA----TTATTTCTATCAGATAAAGTGAATAA-AGAACACCTT-----------TTAC--AGGCATATCAAAAACACACATTTTTCTTTTCATATTT---TGATCTTGTCAAATTATGTCAAAAAAACCGTAAGTTAAATTTAGTGAAGATCTGAAATTTTCTGCTCCG-----TTGTTATAAAAATA i equCab2.chr26 T 849 C 0 s rheMac2.chr2 304840 190 + 189746636 caccttcaGAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTA-AGAACAACTTTTACCTACCACTTAC--ATATATATTGAAAAGGCAAACTTTCCTTT-CATAGTTTGCTAATTTTGGCACAGTAC------ATTAACAAAAGTTAAAT----TAAGTAAGTGAAATGTTCTGTTCTA-----TTGTTTTGAAAAC- i rheMac2.chr2 C 0 C 0 s oryCun2.chr14 22022621 152 - 163896628 ctc---cAGAAC-GTTTTTGATGCTGTATCAGTTTTAT------------------CAGAAA----------CTGGCTTG-----------GAGATTGAAAAACATTTTTTTGTTGTTTTGCTAATTTTGTCAAAGTAT-----CAAAAACAAAAGTTAAGT-----GATTATCTGATGTTTTCTGTTCTA-----TTATTTTAAAAAAA i oryCun2.chr14 C 0 C 0 s cavPor3.scaffold_34 8643222 199 + 24440124 GTCTTTTGGAACTCTGTTTGATTCCCTGTCATTTCTATCAGATAACACACACGA-AGAACAAATTTTCCTTACTGTTTTA--TTGTTTATAGATGAAGAAAAATATCCTTTAGAT-ATTTGGCTAATTTTTCAAAGTAT------AAAAGTCAAAGTTAAATTAAGAGAATATCTGAAATTATTTGCCCAAATTCTTTTTTTTTAAATT- i cavPor3.scaffold_34 C 0 C 0 s rn4.chr11 73469522 180 - 87759784 ctccttcaCAACTATTTATGACCCTCT-TCATGGATGT--GATCATTTGAATGA-AGAAAAG------CCTACTGTGTTCCTTAGTTT---GAAAAATCAAGCTTTTCTTTGCATCACTTGTCTACTTTTCCAGAGCAT------AAATACAAAAGTTAAAT-----ATATGTCTGAAACTGTACGCTCTA-----TTTTCATTAAGGT- i rn4.chr11 C 0 C 0 s mm9.chr16 22831146 183 - 98319150 CTCCTTCAGAACTATTTATGATCCTCT-TCTTTGATGT--GATAATTTGAGTGA-AGAAAAA------CTTTCTGTTTTCCTTTTTTTTTAAAAAATTCAAGTTTTTCTTTTCATGATTTGCTATCTTTTCCAGATTAT------AAATACCAAAGTTAAAT-----ATATATCTGAAAAAATATGCTTTA-----TTTTTATTAAGAT- i mm9.chr16 C 0 C 0 s ponAbe2.chr3 42420532 190 + 202140232 caccttcaGAACTCTTTTGGATCCCACGGTATTTCTATCAGATCATGTGATTTA-AGAATAACTTTTACTTGCCACTTAC--ATATATATTGAAAAGGCAAACTTTCCTTT-CATAGTTTGCTAATTTTGGCAAAGTAC------ATTAACAAAAGTTAAAT----TGAGTAAGTGAAATTTTCTTTTCTA-----TTGTTTTGAAAAC- i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3135543 193 + 6711082 caccttcaGAACTCTTTT-TATCCCATGTTATTTCTATGAGATCATGTGATTTA-AGAACAACTTTTACTTGCCACTTAT--ATATATATTGAAAAGGCAAACTTTCCTTT-CATAGTTTGCTAATTTTGGCAAAGTAC------TTTAACAAAAGTTAAATTAAGTGAGTAAGTGAAATTTTCTGTTCTA-----TTGTTTTGAAAAC- i panTro2.chr4_random C 0 C 0 e loxAfr3.scaffold_13 41959281 427 + 62548349 T a score=44357.000000 s hg19.chr4_gl000194_random 189098 49 + 191469 AATTCTAGAAACTGTCC----TTGTAA-GAACAGCAAAAAGAGAAAAA-------G----ATAAT s panTro2.chr4_random 3135736 49 + 6711082 AATTCTAGAAACTGTCC----TTGTAA-GAAAAGCAAAAAGAGAAAAA-------G----ATAAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420722 49 + 202140232 AATTCTAGAAACTGTCC----TTGTAA-GAACAGCAAAAAGAGAAAAA-------G----ATAAT i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22831329 40 - 98319150 --------AAGTCCCTTCAGCTTTTAG-CAATTCCAAAAAGAGAAAAT-------A--------- i mm9.chr16 C 0 C 0 s rn4.chr11 73469702 38 - 87759784 --------AAGTTTCTTCAGATTTTAG-CCATTCCGAGA--AAAAAAT-------C--------- i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643421 43 + 24440124 ----CCAGAAGTTGTTT----TTGTAA-GAATGGAAGAAAGAGAAAAG-------ATGA------ i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22022773 48 - 163896628 AATTCTAGAAGTTTTCC----TTGTAT-GAACAGCAAAAAAGAAAAAT-------ATGAT----- i oryCun2.chr14 C 0 C 0 s rheMac2.chr2 305030 49 + 189746636 AATTCTAGAAAGTGTCC----TTGTAA-GAACAGCAAAAAGAGAAAAG-------G----ATAAT i rheMac2.chr2 C 0 T 1100 s equCab2.chr26 28516103 50 - 41866177 AATTCTAGAAGTTGTCT----TTGTAAAGAATAGCAAAAAGAGAAGAA-------G----ACGGT i equCab2.chr26 C 0 C 0 s canFam2.chr31 28170009 52 - 42263495 AAATCTAAATGTTATTT----TGTTAAAAAAAAGT-----GAGAAGAACTTATTCT----TTGAT i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22947613 49 + 161106243 AATTTTAGATGTTTTCC----ATGTAAGGAATAGC-TAAAAAGAATAA-------A----GTAAT i bosTau4.chr1 C 0 C 0 s loxAfr3.scaffold_13 41958854 50 + 62548349 AATTCTAGAAATTGTTC----TGATAAAGAATAAAAAGAGAAGAGAAT-------G----AAAAT i loxAfr3.scaffold_13 T 427 I 3 a score=230787.000000 s hg19.chr4_gl000194_random 189147 120 + 191469 TCTCAACTGCAGCTTCAACCATTCTTTGC------T-----TAACAATG-AGTTAATTAAAAGGCAAAA--CTCTATTTC-AGGTTTATATGTGTCAA----------TTGCTTGATTAGAAAGTAAATTATTTA-CCACATATAA s panTro2.chr4_random 3135785 123 + 6711082 TCTCAACTGCAGCTTCAACCATTCTTTGC------A-----TAACAATGTATCTAATTAAAAGGCAAAACTCTCTATTTC-AGGTTTATATGTATCAA----------TTGCTTGATTAGAAAGTAAATTATTTA-CCCCATATAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420771 123 + 202140232 TCTCAACTGCTGCTTCAACCATTCTTTGC------T-----TAACAATGTATCTAATTAAAAGGCAAAACTCTCTATTTC-AGGTTTATATGTATCAA----------TTGCTTGATTAGAAAGTAAATTATCTA-CCCCATATAA i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22831369 99 - 98319150 -----------------------TTTTCT------A-----T-ATGATGTATATAATTACAAGACAAAATGTATTATTTC-AATTTTAAACGTACCAG----------TTGCCTGATGATAAGGCAGATTCTTCA-GGTCATATAA i mm9.chr16 C 0 C 0 s rn4.chr11 73469740 99 - 87759784 -----------------------TTTTAC------A-----T-GTAATTTATATAATTAGAGAACAAAATTTATAATTTC-AATTCTAAATGCCCCAC----------TTGCCTGATGATAAGGCGGATTCTTCA-GATCATGTAA i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643464 105 + 24440124 ----------------------TTTTTGC------ACATAGT-ATAGCATATCTAATTAAAAGGCAAAACTCCATAGTTC-AGTTTTATATGCACCAA----------TTGCCTGGTAAGATAATAAATATTCTA-GCTAGTGTAA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22022821 122 - 163896628 TCTCAGTTGCTGTGTCCATGACTCCTTGC------C-----T-ATAATGTATCTAATTAAAAGGCAAATCTCCCTATTTC-AGTTTTACATGCATCAG----------TTGCCTGATTAGAAAGCTAATTTTCTA-GCCTATGTAT i oryCun2.chr14 C 0 C 0 s equCab2.chr26 28516153 113 - 41866177 TTTCACTTGCTGCTTCAATGGTTCTTGGC------T-----T-ATAGTGTATCTAATTAAAACGCAAAACTCTCAATTTCAAGTTTTATATGCAGTAA----------TGGCCTGATTAGAAAGTAAATTCTCTg----------- i equCab2.chr26 C 0 I 273 s canFam2.chr31 28170061 129 - 42263495 TCTCAGTTGCTGCTTCAATGATTTGTGGCTTCTTTT-----T-ATAGTTTACCTAATTAAAAGGCAGAATTCCCAATTTCAAGTTTTATATGCATCAA----------TTGCCTGATTGGAAAGTAAATTCTCAA-ACCCATATAA i canFam2.chr31 C 0 C 0 s bosTau4.chr1 22947662 124 + 161106243 TCTCAAATGCCTCTTCAATGGTCCTTTGC------T-----T-ACAGTGTATCTAATTAAAAGGCAAAATTCTCCATTTCAAGTTTTATATACATCAG----------TTAATTGATTAGAAAGTAAATTCTCATTAACCATATAA i bosTau4.chr1 C 0 I 1 s loxAfr3.scaffold_13 41958907 132 + 62548349 TTTCAATTGCTCCTTCAACTATTCTTTTT------C-----CCATAGTGTATCTAATGAAAAGGCACAA-TCTGTATTTC-AGTTTTACATGGATCAACATGGACCAGTTTCCTGATTAGCAACTAAAGTTTCTA-ATCCATATAA i loxAfr3.scaffold_13 I 3 C 0 e rheMac2.chr2 305079 1100 + 189746636 T a score=281405.000000 s hg19.chr4_gl000194_random 189267 94 + 191469 TCTGGTGTCAAAAAACTTATAA--------TAAAAT---TACTTTGATTTTATTGCTTAT-AAGTTTGTGAATT-TAAATCTCAACTTACAGTGATGAATTTATTTG s panTro2.chr4_random 3135908 94 + 6711082 TCTGGTGTCAAAAAACTTATAA--------TAAAAT---TACTTTGATTTTATTGCTTAT-AAGTTTGTGAATT-TAAATCTCAACTGAGAGTGATGAATTTATTTG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420894 94 + 202140232 TCTGGTGTCAAAAAACTTATAA--------TAAAAT---TACTTTGATTTTATTGCTGAT-AAGTTTGTGAATT-TAAATCTCAACTTACAGTGATGAATTTATTTG i ponAbe2.chr3 C 0 C 0 s mm9.chr16 22831468 91 - 98319150 TCTTGTGTTAATAAACTTGT----------GAAAAT---TACTCTAATTTTAC-ACAGAT-AAGTCTGAGACTC-CAAATTCCAGCATACTATGATGACTTTATTCA i mm9.chr16 C 0 C 0 s rn4.chr11 73469839 93 - 87759784 TCTTGTGTTAATAAACTTGT----------GAAAAT---GACTCTAATTTTACTGCTGAT-AAGTCTGAGACTAGAAAATCCCCGCAGAGTGTGATGACTTTATCCA i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643569 94 + 24440124 TCTAGTGTCAAGAAACTTATA---------AAAAAT---TACTTTAATTTCACTGCTGCTAAAGTTTGTGAATT-TAAATCTCATCTTACTGTGATAAATGTATTTA i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22022943 94 - 163896628 TCTGGTGTCAAGAAACTTGTAT--------AAAAAT---TACTTTAATTTCATTGCCAAT-AAGTTAGTGAATT-TAAGGCTCAAGTTACTGTGATGAATTCATTTA i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22947787 94 + 161106243 TCTGGAGTCAATAAACTTGTAA--------AGAAAA---CACTTTAATTTCATTGCTGAT-AAGTTTGAGAATT-TAAATCTCAACTTACTGTGATGCATTCATTTA i bosTau4.chr1 I 1 C 0 s equCab2.chr26 28516539 97 - 41866177 TCTGGAGTCAAGAAACTTGTAA--------AAAAAAAATCACTTTAATTTCATTGCTGAT-AAGTTTGCGAATT-TAAATCTCAACTCACTGTGATGAATTTATTTA i equCab2.chr26 I 273 C 0 s canFam2.chr31 28170190 105 - 42263495 TCTGGAGTCAAGAAACTTGTAAAACAAAACAAAAAAAATCACTTTAATTTCATTGCTGAC-AAGTTTGCGAATT-TAAATCTCAACTTCCTGTGATGAATTTATTTA i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41959039 100 + 62548349 TCTACAGTCCAGAAACTTATAAAAAAAA--AAAAAT---CACTTTAATTTCATTGCTGAT-AAGTTTGCAAATT-TGTATCTCAACTTACTGTGATGAATTTATTTA i loxAfr3.scaffold_13 C 0 C 0 e rheMac2.chr2 305079 1100 + 189746636 T a score=708324.000000 s hg19.chr4_gl000194_random 189361 148 + 191469 CTTTGTGCTG-ACAAGACAGTATCTTGAAGTTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTACATAAATGGTATCTTCACAAAGATACATTCATTCTGGTACTGAAAG-T s panTro2.chr4_random 3136002 148 + 6711082 CTTTGTGCTG-ACAAGACAGTATGTTGAAGTTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTACATAAATGGTATCTTCACAAAGATATATTCATTCTGGTACTGAAAG-T i panTro2.chr4_random C 0 C 0 s ponAbe2.chr3 42420988 148 + 202140232 CTTTGTGCTG-ACAAGACAGTATCCTGAAGTTTTGTTTTCCAACTCAGTTCTCAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAG-T i ponAbe2.chr3 C 0 C 0 s rheMac2.chr2 303979 148 + 189746636 CTTTGTGCTG-ACGAGACAGTATCTCAAAGCTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAGAG-T i rheMac2.chr2 T 1100 I 1696 s mm9.chr16 22831559 148 - 98319150 CATTGTGCTG-ACAAGACAGTCTCTTATAGCTTTGTATTCCAGTTCCGTTCTAAATCTGTGGAGTATCAAAGTCTAGCCATTATGCTTTGGGTGTTATAGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGCTATTGAAAA-T i mm9.chr16 C 0 C 0 s rn4.chr11 73469932 138 - 87759784 CACTGTGCTG-ACAAGAC----------AGCTTTGTATTCCAACTCCGTTCTAAGTCTGTGGAGTATCAAAGTCTAGCCATTATGCTTTGGGTGTGATAGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGCTATTGAAAA-T i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643663 150 + 24440124 CTTTGTGCTGTCCAAAACAGCATCTTGGAGCTTTGTTTTCAAACTCTGTGCTAAATCTGGAGTGCAGCAGTCTCTTCTCATTATGCAATGAATGTTATCATAGATAAATGGTATCTTCACAAAGATATATTCATTCTGGTATTGAAAAGT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22023037 148 - 163896628 CTTTGTGCTG-ACAAGACAGTATCTCGGAGCTTTGTTTTCCAACTCAGTTCTAAATCGGCTGTGTATCAATGTCTCTTCATTATGCTCTGGATGCTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAG-T i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22947881 148 + 161106243 CTTTGTGCTG-ACAGGACAGTATCTTGGGGCTTTGTTTTCCAAGTCATTTCTAAATCTGCAGTATATCAAAGTCTCTTCATTATGCTTTGGATGTTATGGTAGAAAAATGGGATCTTCACAAAGATGCATTCATTCTCCTATTGAAAA-T i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28516636 148 - 41866177 CTTTGTGCTG-ACATGACAGGATCTTAGGGCTTTGTTTTCCAAGTCAGTTCTAAATCTGCCTTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTTAAAA-T i equCab2.chr26 C 0 C 0 s canFam2.chr31 28170295 148 - 42263495 CTTTGTGCTG-ACAAGACAGTATCTTGGGGCTTTGTTTTCCAAGTCAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAA-T i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41959139 148 + 62548349 CTTTGTGCTG-ACAGGACAGTATCTTGGAACTTTGTTTTCCAACTCAATTCTAAATCTGCAATGTTTCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATTGTATCTTCACAAAGATACATTCATTCTGGCATTGAAAG-T i loxAfr3.scaffold_13 C 0 C 0 a score=541211.000000 s hg19.chr4_gl000194_random 189509 132 + 191469 GCCTACTTAAAATTCTGCATGAACAG-TTTTATTG---AAAAAATATGTAGACAAGCCATTAATTATACACACTGATTTGGAACAAATTCTTACAGGAAGCATAGCATGTCTTCCATTAACTG----TATACAATTTA-AA s ponAbe2.chr3 42421136 133 + 202140232 GCCTACTTAAAATTCTGCACGAACAG-TTTTATTG---AAAAAATATGTAGACAAACCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATAGCGTGTCTTCCATTAAATG----TATACATTTTATAA i ponAbe2.chr3 C 0 C 0 s panTro2.chr4_random 3136150 133 + 6711082 GCATACTTAAAATTCTTCATGAACAG-TTTTATTG---AAAAAATATGTAGACAAGCCATTAATTATACACAGTGATCTGGAACAAATTCTTACAAGAAGCACAGCATGTCTTCCATTAACTG----TATACAATTTATAA i panTro2.chr4_random C 0 C 0 s mm9.chr16 22831707 133 - 98319150 GCCTACTTAAAATTCAGCACGAATAGTTTTTTTTG----AAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAGATTCTTATAAGAAGCATCGTGTGCCTTCCATTAAATG----TATACATTTTATAC i mm9.chr16 C 0 C 0 s rn4.chr11 73470070 132 - 87759784 GCCTACTTAAAATGCAGCACGAATAG-TTTTATTG----AAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGACGCATAGTGTGCCTTCCATTAAATG----TATACATTTTATAC i rn4.chr11 C 0 C 0 s cavPor3.scaffold_34 8643813 137 + 24440124 GCCTACTTAAAATTCTGCATGCGTAT-TTTTATTG---AAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTGATAAGAAGCATAGCATGCCTTCCATTACATGTATATATACATTTTATAT i cavPor3.scaffold_34 C 0 C 0 s oryCun2.chr14 22023185 133 - 163896628 GCCTACTTAAAATTCTGCAAGGATAG-TTTTATTG---AAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTGTAAGAAGCATACCATGCTTTCCATTAAATG----TATACATTTTATAC i oryCun2.chr14 C 0 C 0 s bosTau4.chr1 22948029 133 + 161106243 GCCTACTTAAAATTCTCTGTGGATAG-TTTTATTG---AAAAAATATGTAGGCAAGCCATTAATTATACACAAAGACTTGGAACAAATTCTTATAAGAAATATAGCATGCCTTCCATTAAATG----TATACATTTTTTAC i bosTau4.chr1 C 0 C 0 s equCab2.chr26 28516784 133 - 41866177 GCCTACTTAAAATTCTGCATGAATAG-TTTTATTG---AAAAAATATGTAGACAAGCCATTAATTATACACAAAGACTTGGAACAAATTCTTATAAGAAGCATAGGACACTTTCCATTAAATG----TATACATTTTATAC i equCab2.chr26 C 0 C 0 s canFam2.chr31 28170443 133 - 42263495 GCCTACTTAACATTCTGTATGAATAG-TTTTATTG---AAAAAATATGTAGACAAGCCATTAATTATACACAAAGACTTGGAACAAATTCTTATAAGAAGCATAGCATGCCTTCCATTAAATG----TACACATTTTGTAC i canFam2.chr31 C 0 C 0 s loxAfr3.scaffold_13 41959287 135 + 62548349 GCCTACTTAAAATTCTGCATGAATAG-TTTTATTGAAAAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTACAAGAAGCATAGCACGCCTTCCATTAAATG----TATAGATTTTAAA- i loxAfr3.scaffold_13 C 0 I 1 e rheMac2.chr2 304127 1696 + 189746636 I a score=440849.000000 s hg19.chr4_gl000194_random 189641 185 + 191469 AAAGTTACTGAAAGTCTTCCTGAAGTTAAACAATAAATCTTTTAAATTT-AACCACTGTGCTCCATCAAAGGTAATTTTTTC---TTTATGACACTCACTTAGGGGATACAGTCAG--ATCTCAGCCTACTTTAAACAAC------------------TAGGCAGTA-TTTTTAGTGCACT-----TTTCTGTTTGtt-----aaaaagctagttg----tcaa s panTro2.chr4_random 3136283 185 + 6711082 AAAGTTACTGAAAGTCTTCTTGAGGTTAAACAATAAATCTTTTAAATTT-AACCACTGTGCTCCCTCAAAGGTAATTTTTTC---TTTATGACACTCACTTAGGGGATACAGTCAG--ATCTCAGCCTACTTTAAACAAC------------------TAGGCAGTA-TTTTTAGTGCACT-----TTTCTGTTTGTT-----AAAAAGCTAGTTG----TCAA i panTro2.chr4_random C 0 N 0 s ponAbe2.chr3 42421269 182 + 202140232 AAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTT-AACCACTGTGCTCCATCAAAGGTAATTTTTTC---TTTATGACACTCACTTAGGGCATACAGTCGG--ATCTCAGCCTACTTTAAACAAC------------------TAGGCAGTA-TTTTTAGTGCATT-----TTTCTGTTTGTT-----AAAAAGCTAGTTG----T--- i ponAbe2.chr3 C 0 N 0 s rheMac2.chr2 305823 177 + 189746636 AAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTT-AACCACTGTGCTCCCTCAAAGGTAATTTTTTC----TTATGACACTC----AGAGCATACAGTCAG--ATCTCAGCCTACTTTAAACAAC------------------TGGGCAGTA-TTTTTAGTGCATT-----TTTCTGTTTGTT-----AAAAAGCTAGTTG----T--- i rheMac2.chr2 I 1696 N 0 s mm9.chr16 22831840 169 - 98319150 GAAGTTACTGAAAGTCTTCCTGAGGTTAAGCCATAAATCTTACAAATGT-AACTGCTAGG-CCCCAGAGAGGTAATTTTTTT-CCCCTATGACACACACTAAAGGCAAGC--------GTCTTAGCACATTAAAAGAAAAAACAAAAAACAAAAAGACTAGGGAGTA-TTTTGAATGCATT------------------------------------------- i mm9.chr16 C 0 N 0 s rn4.chr11 73470202 164 - 87759784 CAAGTTACTGAAAGTCTTCCTGAGGTTAAGCCATAAATCTTACAAATGT-AACTGCTATG-CCCCAGAGAGGTAATTTTTTT--CCCTATGACACACACACAAGGCAAGAAAGGATTGGTCTTAGCACATTAAAAAAAAA----------AAAACAACTAGGGAGTA-TTGTGAGTGCA--------------------------------------------- i rn4.chr11 C 0 N 0 s cavPor3.scaffold_34 8643950 185 + 24440124 AAAGTTACTGCAAATCTTCCTGAGGTTAAACAATAAATCTTAGAAATTT-ACCGATTGTATTCTCCCAAAGGTAATTTTTTT-CCTGTGTGGCATATATATACTGCAGACACTCAA--ATCTTACACTATTTTAAAAGCA-------------------AGGAAATA-TCTT-AATACAC------TTTCTGTTTGTTAACAAAAGAATCTAGTTG-------- i cavPor3.scaffold_34 C 0 N 0 s oryCun2.chr14 22023318 187 - 163896628 AAAGTTCCTGAAAGTCTTCCAGAGGTTAAACAATAAATCTTACAAATTT-CCCAGTAGGC-TCCCCCAAAGGTAATTTTTTAAAATCTATCATATACATGTAGGGAATACACTCTG--ATTCTAGCTGAATTTGAAAAAC------------------TGAACAGTA-ATTTTAGTGCTT----------TTTTTGGATAAAAAAAAATCTAGTTGCTAA---- i oryCun2.chr14 C 0 N 0 s bosTau4.chr1 22948162 179 + 161106243 AAAGTTACTGAAAGTCTTCCTGAGATTATACAATAAATCTTAGAAATTT-AACCACTCTGTTCCCCCAAAGGTAATTTGTTTGTCTCTATGGCAGACACACAGGGCATATACTCAG--ATCTCAGCCTAGTT----TAAC------------------TCGACGGTATTTTTCTGTGCATT-----TT--TGTTTCCT-----AAAAATCTAGTTG-------- i bosTau4.chr1 C 0 N 0 s equCab2.chr26 28516917 174 - 41866177 AAAGTTACTG--AGTCTTCCTGTGGTTAAACAATAAATCTTAGAAATTT-----GCTCTGCTCCCCAAAAGGTAATTTTTT--TCTCTGTGAC--ACACATAGAGCATACACTCAG--ATCTTAGCCTAGTTTAAATAAC------------------TAGACAGTA-TTTTCAGTGCACT-----TTTCTGTTCCTT-----AAAAATCTAGTTG-------- i equCab2.chr26 C 0 N 0 s canFam2.chr31 28170576 166 - 42263495 AAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTGCAAATTT-AATCACTCTGCTCCCCAAAAGGTAATTTTTTTCTCTCTATGAC--ACACATAGGGCATACACTCAG--ATCTTAGCCTAGTTTAAATAAC------------------CAGACGGTA-TTTTCAGCAGATT-----TTTCTGTTT----------------------------- i canFam2.chr31 C 0 N 0 s loxAfr3.scaffold_13 41959423 188 + 62548349 AAAGTTACTGAAAGTCTCCCTAAGGTTAAACAATAAATCTTAAGAATTTCAACCACTACG-TGCCCTGAAGGTAATTTTTTT-TCCCTATGTCACACACACAAGGCATACCCTCAG--ATTTTAGCCCAGTTTAAATTAC------------------TAGGCAGTG-TTTTTAGGGCTTTTTTTTTTTTTGCTTCTT-----AAAAATCTAGCTG-------- i loxAfr3.scaffold_13 I 1 N 0