##maf version=1 scoring=autoMZ.v1 a score=74191.000000 s hg19.chrUn_gl000223 0 19 + 180455 GAATTCTCTGATGTCGAGT s canFam2.chr26 3137860 19 + 42029645 gaattctctgatgtcgtgt i canFam2.chr26 N 0 C 0 s equCab2.chr8 64108288 19 - 94057673 GAATTCTCTGATGTCGAGT i equCab2.chr8 N 0 C 0 s bosTau4.chr17 29900872 19 - 76506943 GAATTCTCTGATGTCGAGT i bosTau4.chr17 N 0 C 0 s cavPor3.scaffold_248 182582 19 + 667635 GAATTCTCTGATGTCGGGT i cavPor3.scaffold_248 N 0 C 0 s rheMac2.chr11 136164 19 - 134511895 GAATTCTCTGATGTCGAGT i rheMac2.chr11 N 0 C 0 s ponAbe2.chr12 162902 19 - 136387465 GAATTCTCTGATGTCGAGT i ponAbe2.chr12 N 0 C 0 s panTro2.chr12 134988 19 - 135371336 GAATTCTCTGATGTCGAGT i panTro2.chr12 N 0 C 0 s choHof1.scaffold_149007 1582 6 + 4870 -------------CAAAGT i choHof1.scaffold_149007 N 0 N 0 s macEug1.Scaffold334823 525 19 + 1927 gagttCTCTGATGTTGTGT i macEug1.Scaffold334823 N 0 C 0 s xenTro2.scaffold_1263 58075 19 + 112973 GAATTGACTGGTGTTTGGT i xenTro2.scaffold_1263 N 0 C 0 s tetNig2.chrUn_random 73749509 19 + 107808587 gagcTCCCATGTGCTTTGT i tetNig2.chrUn_random N 0 C 0 s gasAcu1.chrX 8615200 13 - 15657440 GAATTCTTTTATG------ i gasAcu1.chrX N 0 C 0 s oryLat2.scaffold3117 4894 19 + 10441 gagttctcatgtgccTTTT i oryLat2.scaffold3117 N 0 C 0 s danRer6.chr3 198586 16 - 60907308 GAATCCTCTGATGCAG--- i danRer6.chr3 N 0 I 322 a score=-15984.000000 s hg19.chrUn_gl000223 19 18 + 180455 --------GAGG------TTGGAGGCACGGC----T s fr2.chrUn 180279006 1 - 400509343 -----------------------------------T i fr2.chrUn N 0 C 0 s danRer6.chr3 198924 21 - 60907308 -----ATTAAGG------TTTG----ATGATTGGCT i danRer6.chr3 I 322 C 0 s oryLat2.scaffold3117 4913 18 + 10441 AAGAC----AAG------ATAA----ATCAC----T i oryLat2.scaffold3117 C 0 C 0 s gasAcu1.chrX 8615213 21 - 15657440 -AGACGTCAAAG------ATGA----AGGCC----G i gasAcu1.chrX C 0 C 0 s tetNig2.chrUn_random 73749528 18 + 107808587 GAAAT--CAAAG------CT------ATTAC----T i tetNig2.chrUn_random C 0 C 0 s xenTro2.scaffold_1263 58094 24 + 112973 --------GAGGTAACTATTAGATGCAAAAC----T i xenTro2.scaffold_1263 C 0 C 0 s macEug1.Scaffold334823 544 18 + 1927 --------AAGG------CACGTGCTGTGGC----T i macEug1.Scaffold334823 C 0 C 0 s panTro2.chr12 135007 18 - 135371336 --------GAGG------TTGGAGGCACGGC----T i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 162921 18 - 136387465 --------GAGG------TTGGAGGCACGGC----T i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136183 18 - 134511895 --------GAGG------TTGGAGGCACGGC----T i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 182601 18 + 667635 --------AAGG------TTAGAGGCACGGC----T i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29900891 18 - 76506943 --------GAGG------TTTGAGGCACGAC----T i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108307 18 - 94057673 --------GAGG------TTTGAGGCACGGC----T i equCab2.chr8 C 0 C 0 s canFam2.chr26 3137879 18 + 42029645 --------gagg------tttgaggcacggc----t i canFam2.chr26 C 0 C 0 a score=288590.000000 s hg19.chrUn_gl000223 37 50 + 180455 A---AAGGCCTTTCCACACTCAGTACATTCATAAGGTTTCTCCCCAGTGTGCG s canFam2.chr26 3137897 50 + 42029645 a---aaggcctttccacattcagtacattcatagggtttttccccagtatgtg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64108325 50 - 94057673 G---AAGGCCTTTCCACATTCAGTGCATTCATATGGTTTCTCCCCAGTATGTG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29900909 50 - 76506943 A---AAGGCCTTTCCACATTCAGTACACTCATAGGGTTTCTCCCCAGTATGTG i bosTau4.chr17 C 0 C 0 s cavPor3.scaffold_248 182619 50 + 667635 A---AAGGCCTTTCCACACTCTGTACATCTGTAAGGCTTTTCCCCAGTGTGTG i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 136201 50 - 134511895 A---AAGGCCTTTCCACACTCAGTACATTCATAAGGTTTCTCCCCAGTGTGCG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 162939 50 - 136387465 A---AAGGCCTTTCCACACTCAGTACATTCATAAGGTTTCTCCCCAGTGTGCG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 135025 50 - 135371336 A---AAGGCCTTTCCACACTCAGTACATTCATAAGGTTTCTCCCCAGTGTGCG i panTro2.chr12 C 0 C 0 s macEug1.Scaffold334823 562 50 + 1927 G---AAggatttcccacattcattacattcatagggcttctctccagtgtgaa i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 58118 44 + 112973 ---------CCTCCCACATTCAGCACAAGGAAATGGTTTCTCCCCCGTGTGGG i xenTro2.scaffold_1263 C 0 I 1083 s tetNig2.chrUn_random 73749546 50 + 107808587 G---AATGATTTTTCACATGCTTTACAGCTATATGGTCTCTCACCAGTGTGAT i tetNig2.chrUn_random C 0 C 0 s gasAcu1.chrX 8615234 53 - 15657440 AGAGAATGTTTTTCCACATGTGATGCAGGAATATGGCTTCTCCCCAGTATGAA i gasAcu1.chrX C 0 C 0 s oryLat2.scaffold3117 4931 50 + 10441 A---AAACTATTtctacattctttacatgaaaaaggcttctctcctgtatgtg i oryLat2.scaffold3117 C 0 C 0 s danRer6.chr3 198945 50 - 60907308 G---AAACTCTTCCCACACTGAGTGCATGTGAATGGTTTCTCGCCAGTATGGC i danRer6.chr3 C 0 C 0 s fr2.chrUn 180279007 50 - 400509343 A---AATCTTTTTCCACACACAGTGCAACTATATGGCCGCTCTCCCGAATGAG i fr2.chrUn C 0 C 0 s petMar1.Contig946 57637 50 - 63989 A---AACCCTTTCCCACACTCTTCGCACACATAGGGCTTCTCTCCAGTGTGTG i petMar1.Contig946 N 0 C 0 a score=996587.000000 s hg19.chrUn_gl000223 87 247 + 180455 TTCTCTGGTGTTCAA-----TAAGAAATGAAAGGTAACTGAATGT---TTTATTACAGTCCTTAC-------ACTCATGGGGTTTCTTTCCAGTATGTATCATTTGGTG-TTTCACAAGGTTTGAAATCTGGCTAAAGGTTTTGCCACATTCCTTACATGCATATGGTTTCTCTCCAGTATGAGTCCTCTGGTGTAACACCAGGG--AAAAGCGTCGACCAAAAGTTTTTCCACATTCATGGCATCCATAGGGCCTCTCCACAGT s canFam2.chr26 3137947 247 + 42029645 ttctccggtgttcaa-----tgaggaatgagaggtaactgaatgt---tttattacagtccttac-------actcatggggtttctttccagtatgtatcatctgatg-tttcacaaggtttgaaatctggctaaaggttttgccacattctttacacacatatggtttctctccagtatgagttctttggtgtaacacaaggg--aaaagcgccgactgaaagtttttccacactcatgacatccatggggtctctccacagt i canFam2.chr26 C 0 C 0 s equCab2.chr8 64108375 247 - 94057673 TCCTCTGGTGTTCAA-----TGAGAAATGAAAGGTAACTAAATGT---TTTATTACAGTCCTTAC-------ACTCATGGGGTTTCTTTCCAGTATGTATCATTTGATG-TTTCACAAGGTTTGAGATCTGGCTAAAGGTTTTGCCACATTCCTTACACACATATGGTTTCTCTCCAGTATGAGTTCTCTGATGTAACACAAGGG--AAAAGCGCCGACTGAAAGTTTTTCCACATTCATGGCATCCATGGGGCCTCTCCACAGT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29900959 247 - 76506943 TTCTCTGGTGTTCAA-----TGAGGAAAGAAAGGTAACTGAATGT---TTTATTACAGTCTTTAC-------ACTCATGGGGTTTCTTTCCTGTATGTATCATCTGATG-TTTTACGAGGTTTGAGATCTGGCTAAAGGTTTTCCCACATTCCTTACATACATATGGTTTCTCTCCAGTATGAGTTCTCTGATGTAACACAAGGG--AAAAGCGCCGACTGAAAGTTTTTCCACATTCATGGCATCCATAGGGTCTCTCCACAGC i bosTau4.chr17 C 0 C 0 s cavPor3.scaffold_248 182669 247 + 667635 TTCTCTGGTGTTCAA-----TAAGGAAGGAAAGGTAGCTGAATGT---TTTATTACAGTCTTTAC-------ACTCATGAGGTTTCTTACTAGTATGTATCATTTGATG-TTTCACAAGGTTTGAAATCTGGCTAAAGGTTTTGCCACAATCCTTACATATATATGGCTTCTCTCCAGTATGAGTTCTCTGGTGTAATACAAGGG--AAAAGCGCCGACTGAACATTTTTCCACATTCTTGGCATCCATAGGGCCTCTCTACTGC i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 136251 247 - 134511895 TTCTCTGGTGTTCAA-----TAAGAAATGAAAGGTAACTGAATGT---TTTATTACAATCCTTAC-------ACTCATGGGGTTTCTTTCCAGTATGTATCATTTGATG-TTTCACAAGGTTTGAAATCTGGCTAAAGGTTTTGCCACATTCCTTACATGCATATGGTTTCTCTCCAGTATGAGTCCTCTGGTGTAACACCAGGG--AAAAGCGTCGACCAAAAGTTTTTCCACACTCATGGCATCCATAGGGCCTCTCCACAGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 162989 247 - 136387465 TTCTCTGGTGTTCAA-----TAAGAAATGAAAGGTAACTGAATGT---TTTATTACAGTCCTTAC-------ACTCATGGGGTTTCTTTCCAGTATGTATCATTTGATG-TTTCACAAGGTTTGAAATCTGGCTAAAGGTTTTGCCACATTCCTTACATGCATATGGTTTCTCTCCAGTATGAGTCCTCTGGTGTAACACCAGGG--AAAAGCGTCGACCAAAAGTTTTTCCACATTCATGGCATCCATAGGGCCTCTCCACAGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 135075 247 - 135371336 TTCTCTGGTGTTCAA-----TAAGAAATGAAAGGTAACTGAATGT---TTTATTACAGTCCTTAC-------ACTCATGGGGTTTCTTTCCAGTATGTATCATTTGGTG-TTTCACAAGGTTTGAAATCTGGCTAAAGGTTTTGCCACATTCCTTACATGCATATGGTTTCTCTCCAGTATGAGTCCTCTGGTGTAACACTAGGG--AAAAGCGTCGACCAAAAGTTTTTCCACATTCATGGCATCCATAGGGCCTCTCCACAGT i panTro2.chr12 C 0 C 0 s macEug1.Scaffold334823 612 247 + 1927 tccGAAGGTGTCGAA-----TGAGGGCTGAACAGTAACTAAAGGA---CTTCTCACATTCGTGAC-------ACTGATACGGTTTCTCTACATTATGAATGACCCGATG-TCGCATAAGGGTCGAGCTGTCACTAAAGGTCTTCCCACATTCaccacattcataaggtttctctccagtatggattctctgatgtacagtaagGC--ATGTGCTTTGGCTgaaggtcttcccacattcactgcatttgtagggcttctctccagt i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 59245 247 + 112973 TTTCCTGGTTATGAAGAAGTTGAGTCTTAGAAGG-----GAATTT---TTTCCCACATTCTGTGC-------AAGTGAATGGTTTCTCCCCTGTGTGAATCCTCTGGTG-TCTTTCAAGGTCTGTCTGTTGACTGAAGCTTTTCCGGCATTCTACACTAGCAAATGGTTTCTCTCCTGTGTGAATTTTACAGTGGCTCCTAGGGT--TATTTTGTTGGGAGAAGCTTTTCCCACATTCTGGGCAGGTAAAAGGTTTCTCCCCGAT i xenTro2.scaffold_1263 I 1083 C 0 s tetNig2.chrUn_random 73749596 243 + 107808587 CTCCCAGGTGTCTGG-----GTAATTGACAGGTTTGACTAAATGA---TTTCCCACATTTTACAA-----------ATATGATCTCTCACCAGAATGAACTCTGACATG-CTTAGTTAAATTAGTGCTGCAActaaatgattttccacatgttttgcaactatatggtttctcaccagtgtgaactctcacaTGCTTAGTCAAAT--CAGAGCTATGACTGAATGATTTTTCACAAGTTTTGCAactatatggtttctcaccagt i tetNig2.chrUn_random C 0 C 0 s gasAcu1.chrX 8615287 247 - 15657440 TTCTTTTATGAGACG-----TCAA---AGATGAAGGCCGAGAGAATGTTTTTCCACATGTGATGC-------AGGAATATGGCTTCTCCCCACTATGAGTTCTTTTATGACGCTTTAATACT-GATAGCCAAGAGAATGTTTTTCCACATGCACTGCAGGAATATGGCTTCTCCCCACTATGAGTTATTTTATGAGACGTCAAAG--ATGATAGCCGACAGAATGTTTTCCCGCAAATTATGCAGGAATATGGCTTCTCCCCAGT i gasAcu1.chrX C 0 C 0 s oryLat2.scaffold3117 4981 247 + 10441 TTCTTATGTGTGTTT-----TCAGATTAGATATATGACTAAAGCG---TTttgtacattctttac-------atgaaaaaggcttctctcccgTATGTGTTCTCATGTG-CGTTTTCAGATTAGATATACGACTAAAGCCTTTTGTACATTCTGTACATGAAAAAGCCTTCTCTCCTGTatgtgttttcatgtgtgttttgagtt--gAGATATACGACTAAAGCCTTTTGTACATTCTGTACATGAAAAAGCCTTCTCTCCTGT i oryLat2.scaffold3117 C 0 C 0 s danRer6.chr3 198995 247 - 60907308 TCCTCATGTGTTTAA-----TAACGTCTGATGATTGGTTAAAACC---TTTGCCACACTGTGTGC-------ACATGTATGGTTTCTCTCCAGTGTGGATCTTCATGTG-TTGGTTAAGGGTTGATGCGTGGCTGAAACTCTTCCCACACTGAGTGCATGTGAACGGTTTCTCTCCAGTGTGGATCCTCATGTGTTTATTAACAT--CTGATGATTGGCTGAAACTCTTCCCACACTGAGTGCACATGTATGGTTTCTCTCCAGT i danRer6.chr3 C 0 C 0 s fr2.chrUn 180279057 247 - 400509343 TCCTCATGTGGCGCG-----TT-------AGATTGGACTGAGCGC---TGAATTTCATGTTGCAGACAGAACAAGCATAGGGTTTCTCTCCAGTGTGAATTATTTTGTG-CTTGACAAGGTCTGCTTTCTCTCTGAAGTTCTTGCCACATTCCCCACAGCGGTGTGGTCGTTCCCCCGTGTGGATGCGGATGTGCACGTTCATGTTCCCCAGTTGTG--TGAAGCCCTTTCCACAAAAGCTGCACATGTACGGCTTCTGTTCAGA i fr2.chrUn C 0 C 0 s petMar1.Contig946 57687 247 - 63989 TCCTCTGATGCATCT-----TTAAGTTGGAAATAACCTGGAAAGC---TTTCCCACACTCCTGGC-------ACACGAATGGCCTCTCGCCGGTGTGCGTCCTCTGATG-AGTTTTCAGGGTGGAGATGCGAGAAAACCCCTTTCCGCACTCCTCGCACATGTACGGCCTCTCTCCCGTGTGGATCATCTGGTGGCTCTGTAGGT--GGGAGATCCTGGAGAACGCCTTTCCGCATTCCTTACACACGTACGGCCTCTCTCCAGT i petMar1.Contig946 C 0 C 0 a score=28080.000000 s hg19.chrUn_gl000223 334 21 + 180455 ------------ACTGATATTCATATG------------------TTGAGC s panTro2.chr12 135322 21 - 135371336 ------------ACTGATATTCATATG------------------TTGAGC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163236 21 - 136387465 ------------ACTGATATGCATATG------------------TTGAGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136498 21 - 134511895 ------------ACTGATATTCATATG------------------TTGAGC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 182916 21 + 667635 ------------AGTCATACTTGTATG------------------CTGAGT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901206 21 - 76506943 ------------ACTGACATTCACATG------------------CTGAGA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108622 21 - 94057673 ------------ATTGATACTCATGTG------------------TTGAGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138194 21 + 42029645 ------------atTGATACTCATGTG------------------CTGAGA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 77819 21 - 3408981 ------------ACTGACGGTCATGTG------------------TTGAGC i loxAfr3.scaffold_113 N 0 C 0 s macEug1.Scaffold334823 859 21 + 1927 ------------gtgaattctcagATG------------------CCGAAT i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 59492 21 + 112973 ------------GTGTTTTTTCTTGTG------------------TTCTTT i xenTro2.scaffold_1263 C 0 C 0 s tetNig2.chrUn_random 73749839 21 + 107808587 ------------gtgaactctcacaTG------------------CTTAGT i tetNig2.chrUn_random C 0 I 6 s gasAcu1.chrX 8615534 39 - 15657440 ------------ATGAATTCTTATATGACTCTTCACTGCTGATAGTTTAGT i gasAcu1.chrX C 0 I 21 s oryLat2.scaffold3117 5228 15 + 10441 ------------Atgtgttctcatgtg------------------------ i oryLat2.scaffold3117 C 0 I 1 s danRer6.chr3 199242 21 - 60907308 ------------GTGGATCCTCATGTG------------------CTGATT i danRer6.chr3 C 0 C 0 s fr2.chrUn 180279304 15 - 400509343 ------------GTGCGAGTTCATGTG------------------------ i fr2.chrUn C 0 N 0 s petMar1.Contig946 57934 25 - 63989 GTGCGTCTTCTGATGCATCTTCAGG-------------------------- i petMar1.Contig946 C 0 C 0 a score=-40898.000000 s hg19.chrUn_gl000223 355 52 + 180455 CAGGGCTTCTT-GATG--AG---A---GACTGT------------------------------------------T---ACTTTCCTAATACA---------------TCCCT-G-----ATTTTCT s panTro2.chr12 135343 52 - 135371336 CAGGGCTTCTT-GATG--AG---A---GACTGT------------------------------------------T---ACTTTCCTAATACA---------------TCCCT-G-----ATTTTCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163257 52 - 136387465 CAGGGCTTCTT-GATG--AG---A---GACTGT------------------------------------------T---ATTTTCCTAATACA---------------TCCCT-G-----ATTTTCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136519 52 - 134511895 CAGGGCTTCTT-GATG--AG---A---GACTGT------------------------------------------T---ACTTTCCTAATACA---------------TCCCT-T-----ATTCTCT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 182937 58 + 667635 CAAAACTTCTT-GCTG--AG---ACTTGCCTGG------------------------------------------CACAACTTGCATGACACA---------------ATCTT-G-----TTTCCCT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901227 52 - 76506943 CAGGGCTTCTT-GATG--TG---A---AGCTGT------------------------------------------C---ACTTGCCTGATGCA---------------TCCCT-G-----ATTTCCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108643 52 - 94057673 CAGGGCTTCTT-GATG--AG---A---GACTGT------------------------------------------C---ACTCGCCTAATACA---------------TCCTT-G-----ATTTCCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138215 52 + 42029645 CAGGGCTCCTG-AATG--AG---A---GTCTGT------------------------------------------C---ACTTGCCTGATACA---------------TCCCT-G-----ATTTCCT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 77840 52 - 3408981 CAAGGCTTCCG-GATG--AG---A---GACTGT------------------------------------------C---ACTTGCCTGACGTA---------------CCCTT-G-----ACTTCCT i loxAfr3.scaffold_113 C 0 C 0 s macEug1.Scaffold334823 880 56 + 1927 AAGAGCAGAGA-AGTG--AGTGAA---GGCTTT------------------------------------------T---CTGcactcattaca---------------ttcatag-----attttct i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 59513 73 + 112973 AAGGCTTGCTT-TATGCCTG---A---AACTTT------------------------------------------C----CCCACATTCTACACAAGAAATGGTTTCTCCCCT-GTGTGAATTTTCC i xenTro2.scaffold_1263 C 0 C 0 s fr2.chrUn 163333699 42 - 400509343 GAGTATTTATT-GTGA--AA---G---GACTT-------------------------------------------C---CCACATATGCCACA---------------GTTG--------------- i fr2.chrUn N 0 I 18 s gasAcu1.chrX 8615594 85 - 15657440 GCATAAATATG-GTTG--AT---A---AACTCTATGGGTTATTCTCATGTGTGCAAACAAGCGATTTCTATTTTGA---AAGTATTTCCCACA---------------ATCT--------------- i gasAcu1.chrX I 21 N 0 s oryLat2.scaffold3117 5244 42 + 10441 gttttaagatgagtta--aa---a---aact--------------------------------------------a---aaacttttatcaca---------------ttct--------------- i oryLat2.scaffold3117 I 1 I 9 s danRer6.chr3 199263 37 - 60907308 ----AAGGTTT-GATG--TG---T---GGCT--------------------------------------------G---AAACTCATTCCACA---------------CTCA--------------- i danRer6.chr3 C 0 I 27 s petMar1.Contig946 57959 53 - 63989 TTGGACATCTT-GGTG--A----A---GCCTTTTC----------------------------------------C---ACACTCCTCGCACA---------------CGTAC-G-----GTTTCCC i petMar1.Contig946 C 0 C 0 e tetNig2.chrUn_random 73749860 6 + 107808587 I a score=-1875.000000 s hg19.chrUn_gl000223 407 75 + 180455 TGCAGCATCTCAGTATGATCCTT---------GCA--TT---------TCCAGCCTCCTTTAAAAC-------------------TGGAATACACAGGGC----CTTGACTTAGAATT s panTro2.chr12 135395 75 - 135371336 TGCAGCATCTCAGTATGATCCTT---------GCA--TT---------TCCAGCCTCCTTTAAAAC-------------------TGGAATACACAGGGC----CTTGACTTAGAATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163309 75 - 136387465 TGCAGCATCTCAGTATGATCTTT---------GCA--TT---------TCCAGCCTCCTTTAAAAC-------------------TGGAATACACAGGGC----CTTGACTTAGAATT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136571 75 - 134511895 TGCAGCATCTCTGTATGATCCTT---------GCA--TT---------TCCAGCCTCCTTTAAAAT-------------------TGGAATACACAGGGC----CTTGACTTAGAATT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 182995 75 + 667635 GGCAGCACCTCAGTGCCATCCTC---------AAT--TT---------GCCAGTTTCTTTTCAAGT-------------------TGGAACTTACGGAGT----GTTGGCTTACAATT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901279 75 - 76506943 TGCAGCATCTCAGTATCACCCTC---------ACA--TT---------TCCAGCCTTCTTTAAAAC-------------------TGGAATACTCAGAGC----CTTGGCTTAGAAAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108695 75 - 94057673 TGCAGCATCTCAGTAGCATCCTC---------ATA--TT---------TCCAGCCCCCTTTAAAAC-------------------GAGAAGACTCAGGGC----CCTGGCTTAGGATT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138267 72 + 42029645 T---GCATCTGAGTATCTTCCTC---------GCA--TT---------TCCAGCCTCCTTTAAAAC-------------------TGGAATGGTCAGGGT----CTTGGTTAAGAATT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 77892 75 - 3408981 TGCAGCATCTCAGTATCAGCCAT---------ACA--TT---------TCCAACCGCCTTTAAAAC-------------------CGGAATCCTCAGGGC----ACTGGCTTAGAATT i loxAfr3.scaffold_113 C 0 C 0 s macEug1.Scaffold334823 936 92 + 1927 cctggttttttcttttctttttt-----------c--tc---------ttcaaccTGCCTTCACACTGATTGGCTATTCTTAACATGGAGCTCAAGGTAT----CACCATTCGTGGGC i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 59586 63 + 112973 ATTGGC-TCCTAATGTGACTTTGTTGGGAGAAGCT--TT---------TCCGGCATTCTACACAAG-------------------CAAA------------------------TGGTT i xenTro2.scaffold_1263 C 0 C 0 s fr2.chrUn 163333759 56 - 400509343 ---TGGCCCTTCTCATGCAGTTT---------GAG--TGAATATG---------------CAGCAC-------------------TGAAGCCCTT--------------CAGACAGAT i fr2.chrUn I 18 N 0 s oryLat2.scaffold3117 5295 63 + 10441 ---aAAGTCTTCTCACGTC-TCT---------GAG--TTCTTATG---TCAG------TTCTGAAC-------------------TGAGACCCATA------------ACCAAAAGTT i oryLat2.scaffold3117 I 9 I 6 s danRer6.chr3 199327 73 - 60907308 ---TGGATCCTCATGTGAATCTT---------GAGGCTGCTTTTACTTTCAAAACTCTTTCCACAC-------------------TGAGTGCAGG--------------TAAAACTAT i danRer6.chr3 I 27 I 10 s petMar1.Contig946 58012 76 - 63989 TGGAGCACAGCCATGCGGGAATA---------GGG--TT------------AGCATTTGGCACGAT-------------------TAAACAAAGTAGAGTACGGTTTGTTACATCATC i petMar1.Contig946 C 0 C 0 e tetNig2.chrUn_random 73749860 6 + 107808587 I a score=52550.000000 s hg19.chrUn_gl000223 482 33 + 180455 CTTTC-------CATGATCAAATACTGGGATGA--GTCA---TCA s panTro2.chr12 135470 33 - 135371336 CTTTC-------CATGATCAAATACTGGGATGA--GTCA---TCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163384 33 - 136387465 CTTTC-------CATGATCAAATACTGGGATGA--GTCA---TCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136646 33 - 134511895 CTTTC-------CATGATCAAATACTGGGATGA--GTCA---TCA i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 183070 36 + 667635 CTTTC-------CCTTATCAAACACTGGAATGG--ATCATCTTCG i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901354 36 - 76506943 CTTTC-------CATTATCAAATACTGGGATGA--ATCATCTTCA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108770 36 - 94057673 CTTTC-------CATTATCAAATACTGAGATGA--GTCATCTTCA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138339 36 + 42029645 CTTTC-------CACTACCAAATACTGGGATGA--ATCATCTTCA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 77967 36 - 3408981 CTTTC-------CATTATCAAATACTGGTATGA--GTCATTTCCA i loxAfr3.scaffold_113 C 0 C 0 s macEug1.Scaffold334823 1028 36 + 1927 TTTTC-------CATTAGCGGTCCCTGAAGGGA--ACCTTCTTCA i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 59649 30 + 112973 TCTCC-------CCTGAGTGAATTTTCCAGTGG--CTCC------ i xenTro2.scaffold_1263 C 0 C 0 s oryLat2.scaffold3117 5364 30 + 10441 CTTTC---------TGTACAGATACAAAGTCTGTCATCA------ i oryLat2.scaffold3117 I 6 C 0 s danRer6.chr3 199410 24 - 60907308 CCTTT---------TGAAAATATCATCAGTCTG------------ i danRer6.chr3 I 10 C 0 s petMar1.Contig946 58088 40 - 63989 CTTTCAAAAGTACACACACATCCCTTACAATAA--ATCC---ACA i petMar1.Contig946 C 0 C 0 e tetNig2.chrUn_random 73749860 6 + 107808587 I a score=25517.000000 s hg19.chrUn_gl000223 515 29 + 180455 TAAATGACATTTTTT--------GGTG-AAAAGTCTTT s panTro2.chr12 135503 29 - 135371336 TAAATGACATTTTTT--------GGTG-AAAAGTCTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163417 29 - 136387465 TAAATGACATTTTTT--------GCTG-AAAAGTCTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136679 29 - 134511895 TAAATGACATTTTTT--------GGTG-AAAAGTCTTT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 183106 29 + 667635 TAAGTGACATTTTTT--------GGAG-AAAAGCCACT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901390 29 - 76506943 AATATGACATTTTTT--------GGAG-AAAACTCTTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108806 29 - 94057673 CATATGACTTTTTTT--------GGAG-ACAACACTTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138375 29 + 42029645 CATATGACATTATTT--------GGAG-AAAATTCTTT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 78003 29 - 3408981 TAAATATCATTTTTT--------GAAG-AAATGTCTTT i loxAfr3.scaffold_113 C 0 C 0 s macEug1.Scaffold334823 1064 30 + 1927 GAAGTGCCTTGTTTT--------GAAGCAGACGACTTT i macEug1.Scaffold334823 C 0 I 5 s xenTro2.scaffold_1263 59679 28 + 112973 TAAGGGAACTTTGTT--------GGGA-AAAGCTTTT- i xenTro2.scaffold_1263 C 0 I 744 s tetNig2.chrUn_random 73749866 22 + 107808587 --AGAGCTAT-------------GGCT-GAACGATTTT i tetNig2.chrUn_random I 6 I 6 s oryLat2.scaffold3117 5394 29 + 10441 ---GAGTCATTTTTC---ATGTAGGCA-AAGAGATT-- i oryLat2.scaffold3117 C 0 C 0 s danRer6.chr3 199434 35 - 60907308 --TAAATGATTTTCCTCAATTTTGACA-TGATGTTCCT i danRer6.chr3 C 0 I 7 s petMar1.Contig946 58128 33 - 63989 ---GCCATAatctttccactgctgaat-gaagccctT- i petMar1.Contig946 C 0 C 0 a score=8060.000000 s hg19.chrUn_gl000223 544 56 + 180455 --GATCTCACCACTTGACTCTGAAA---CTGAAAGATACCA-----AAAAAAAAGTGAATGT-TT-----CT------------- s macEug1.Scaffold334823 1099 54 + 1927 --GATCTCAGTTTGGGTATTCTGgt---ctgaaagaaat-------gaaaaacagaaacatt-ct-----ct------------- i macEug1.Scaffold334823 I 5 C 0 s loxAfr3.scaffold_113 78032 57 - 3408981 --GATTTCACAATTTGACTCTGAAA---CTGAAAGATACCAA----AAAACCAAGCAAATAT-TT-----CT------------- i loxAfr3.scaffold_113 C 0 C 0 s canFam2.chr26 3138404 48 + 42029645 --GATCTCACCATGAGACTCTGAAA---ATGAA-------------AAAACAAAGCAAATGT-TT-----GT------------- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64108835 48 - 94057673 --GATCTCACCATTTGACTCTGAAA---CTGAA-------------AAGACAAGGCAAATGT-TT-----CT------------- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29901419 48 - 76506943 --GATCTCACCATTTGACTTTGAAG---CTGAA-------------AAAACAAAGCAAATAT-TT-----TT------------- i bosTau4.chr17 C 0 C 0 s cavPor3.scaffold_248 183135 61 + 667635 --GATCTCACCATTTGATTCTAACA---CTGAAAAAAACAAAAAACAGAAAACACCAAATGT-TT-----TT------------- i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 136708 55 - 134511895 --GATGTCACCACTTGACTCTGAAA---CTGAAAGATACC------AAAAAGAAGTGAATGT-TC-----AT------------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 163446 56 - 136387465 --GATCTCACCACTTGACTCTGAAA---CTGAAAGATACCA-----AAAAAAAAGTGAATGT-TT-----CT------------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 135532 55 - 135371336 --GATCTCACCACTTGACTCTGAAA---CTGAAAGATACC------AAAAAAAAGTGAATGT-TT-----CT------------- i panTro2.chr12 C 0 C 0 s tetNig2.chrUn_random 73749894 20 + 107808587 -------------------------------------------------GTTTTACAACtgtatggt---tt------------- i tetNig2.chrUn_random I 6 C 0 s oryLat2.scaffold3117 5423 18 + 10441 --------------------------------------------------ACTAACAATCAT-TGAG---CT------------- i oryLat2.scaffold3117 C 0 C 0 s danRer6.chr3 199476 51 - 60907308 --AATCTCCTCAT---ACTCTTCAA---TTGGGT------------CTGAAATAAAAAAAGT-TGAGTTTTT------------- i danRer6.chr3 I 7 I 8276 s petMar1.Contig946 58161 62 - 63989 CCCACATCACCAT----CCCTTACAATCCTGCA-------------ATACCACAATCCAAGT-TG-----CTCCTGAACTTCCCT i petMar1.Contig946 C 0 C 0 e xenTro2.scaffold_1263 59707 744 + 112973 I a score=20749.000000 s hg19.chrUn_gl000223 600 21 + 180455 ---------------------T---TTTCC-TGTATTGAATAAAAT s panTro2.chr12 135587 21 - 135371336 ---------------------T---TTTCC-TGTATTGAATAAAAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163502 21 - 136387465 ---------------------T---TTTCC-TGTATTGAATAAAAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136763 21 - 134511895 ---------------------T---TTTCC-TGTATTGAATAAAAT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 183196 16 + 667635 ---------------------C---TTTTT-TTCCTTGAGT----- i cavPor3.scaffold_248 C 0 I 371 s bosTau4.chr17 29901467 24 - 76506943 ---------------------TTTATTTTT-TGTATTGAGTAACAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108883 22 - 94057673 ---------------------T---TTTTTATGTATTGAGTAAAAT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138452 21 + 42029645 ---------------------T---TTTCC-TCTATTGAGTAAAGT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 78089 21 - 3408981 ---------------------T---TTTTC-TGTATTGAGTAAAAT i loxAfr3.scaffold_113 C 0 I 2647 s macEug1.Scaffold334823 1153 21 + 1927 ---------------------t---tccct-tgtgctgagagaaaa i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 60451 21 + 112973 ---------------------T---TTCCT-GGTGTTGGAGAAGTT i xenTro2.scaffold_1263 I 744 C 0 s tetNig2.chrUn_random 73749914 11 + 107808587 ---------------------c---tcacc-agtgt---------- i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold3117 5441 20 + 10441 ---------------------T---TCACC-AGACTTCATACAAG- i oryLat2.scaffold3117 C 0 C 0 s petMar1.Contig946 58223 42 - 63989 CCCTCCACGTCACCTGGGATAT---CCTGC-TGTGTCGTCTATGAT i petMar1.Contig946 C 0 C 0 e danRer6.chr3 199527 8276 - 60907308 I a score=-39513.000000 s hg19.chrUn_gl000223 621 26 + 180455 A-AGGCCAT---------TTCTCCCTTC----------------TTTAGCAA---- s panTro2.chr12 135608 26 - 135371336 A-AGGCCAT---------TTCTCCCTTC----------------TTTAGCAA---- i panTro2.chr12 C 0 I 329 s ponAbe2.chr12 163523 26 - 136387465 A-AGGCCAT---------TTCTCCCTTC----------------TTTAGCAA---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 136784 26 - 134511895 T-AGGCCAT---------TTCTCCCTTC----------------TTTAGCAA---- i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 183583 25 + 667635 T-GAACCAC---------TACTCCCTTC----------------TTAATGA----- i cavPor3.scaffold_248 I 371 C 0 s bosTau4.chr17 29901491 27 - 76506943 AAATGTCAT---------TCTTCCATTT----------------TAAAATGA---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108905 27 - 94057673 ATAAGCCAC---------TCCTCCTTTT----------------AGAAATGA---- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138473 26 + 42029645 A-AAGCCAC---------TCCTCACTTT----------------TTCAATGA---- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 80757 26 - 3408981 -AAAGGCAC---------CCCTTCCTTT----------------CTTAATGA---- i loxAfr3.scaffold_113 I 2647 C 0 s macEug1.Scaffold334823 1174 13 + 1927 -gaaataac--------------------------------------aataa---- i macEug1.Scaffold334823 C 0 C 0 s xenTro2.scaffold_1263 60472 27 + 112973 -----GCACGGTCTAATGGTCTCTTGTC----------------TTTA-------- i xenTro2.scaffold_1263 C 0 C 0 s tetNig2.chrUn_random 73749925 26 + 107808587 -gaattCTC---------ATGTGACTAG----------------TTAAATTA---- i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold3117 5461 42 + 10441 -AAAGTCTC---------TTTTCGCTTGAAGATTGTTTGGGTTTCTTAACCA---- i oryLat2.scaffold3117 C 0 C 0 s petMar1.Contig946 58265 30 - 63989 ----------CATTAGTTTTCTCCCTCC----------------GGTCACACGGCA i petMar1.Contig946 C 0 C 0 e danRer6.chr3 199527 8276 - 60907308 I a score=-46501.000000 s hg19.chrUn_gl000223 647 48 + 180455 CAGAA-TG-----AAGTTTC---AAA----AAATCTTATCAAT--------A-----GCAG----CT-TTCACAG----CTGT s rheMac2.chr11 136810 48 - 134511895 CAGAA-TG-----AAGTTTT---TAA----AAGTCATATCAGT--------A-----ACAG----CT-TTCACAG----CTGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 163549 52 - 136387465 CAGAA-TG-----AAGTTTT---AAA----AAATCTTATCAAT--------A-----GCAG----CT-TTCACAGCTGTCTGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 135963 48 - 135371336 CAGAA-TG-----AAGTTTT---AAA----AAATCTTATCAAT--------A-----GCAG----CT-TTCACAG----CTGT i panTro2.chr12 I 329 C 0 s tarSyr1.scaffold_340349 2394 44 + 3190 CAGAAGTA-----AATTTTT---ACA----AAATCTTAACTG---------A-----ATAG----CT-TTCACAG-------- i tarSyr1.scaffold_340349 N 0 C 0 s cavPor3.scaffold_248 183608 45 + 667635 AACaa-tt-----aaattta---aaa----ataatttaGC-----------A-----ATGG----CT-TTCTTAC----CTGC i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901518 49 - 76506943 --GAA-TT-----ACATTGA---AAA--ACATATCTTAGCATT-G------C-----ATGA----CT-TTTATAG----TTGT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108932 53 - 94057673 GAGAA-CT---GAATGGGAA---AAA--AAAAATCTTAGTATT-G------C-----ATGG----CT-TTCATTG----TTGT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138499 56 + 42029645 CCGAT-TTTTAAAAAGCAGG---AAA--AAAAATCTCAACACT-G------C-----ATGG----CT-TTCACAG----TTCT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 80783 54 - 3408981 Gataa-tt-----aaattaa---aaaaaaaaaaaCTCATCAATCG------C-----ATAG----CT-TTCGTAA----CGGT i loxAfr3.scaffold_113 C 0 C 0 s macEug1.Scaffold334823 1187 52 + 1927 CAGAA-AT-----AAAGTTG---AAA----ATACTGCCTAAGT--------A-----GGAGGAGTCT-TTCACAA----ATGT i macEug1.Scaffold334823 C 0 N 0 s xenTro2.scaffold_1263 60499 37 + 112973 -----------------TCC---AAA----GAATCAGAGAATT--------G-----TCAG----CT-TCTGGGG----CTTC i xenTro2.scaffold_1263 C 0 I 3 s tetNig2.chrUn_random 73749951 56 + 107808587 --GAG-TT-----ATAACTG---AAT----gactttccacat--gttttacaactatatgg-----t-ttctcac----cagt i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold3117 5503 57 + 10441 --AAG-TT-----GAGTTTGTGAAGT----TCATTCCAACATTAGCGTCACA-----ATGG----ct-ttctgac----atgt i oryLat2.scaffold3117 C 0 C 0 s petMar1.Contig946 58295 47 - 63989 -TGAA-CT-----GAAATGT---AGA-----TATTCCAGTAAA--------T-----TCAG----CTGTTCATGT----CTCT i petMar1.Contig946 C 0 C 0 e danRer6.chr3 199527 8276 - 60907308 I a score=-75008.000000 s hg19.chrUn_gl000223 695 57 + 180455 GA---------C---------TGAAATC-T-------GAGTAGTAT--------GCCCAGAACTTCAGAAAAGATCAA---ACAGAGATAGACA s rheMac2.chr11 136858 58 - 134511895 GA---------C---------TGAAATCTT-------GAGTAGTAT--------GCCCAGAACTTAAGAAAAGATCAA---ATAGAGATAGAGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 163601 57 - 136387465 GA---------C---------TGAAATC-T-------GAGTAGTAT--------GCCCAGAACTTCAGAAAAGATCAA---ATAGAGATAGACA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 136011 57 - 135371336 GA---------C---------TGAAATC-T-------GAGTAGTAT--------GCCCAGAACTTCAGAAAAGATCAA---ACAGAGATAGACA i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_340349 2438 43 + 3190 ---------------------------C-------------AATAA--------GCCCAGAAATTCAGAGTAGATCAA---ATAGAGGTGTGGG i tarSyr1.scaffold_340349 C 0 C 0 s cavPor3.scaffold_248 183653 49 + 667635 TA---------CTTATGACTGTGCAATT-T-------GAGCGGTAC--------ACCTAGTAATTGAGAAGAG--------------------A i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901567 67 - 76506943 CATGTCT----T---------TGAAATC-T-------GAGCAGTATATCCAGAAATCCAGAAATTCAGAAGACATTA-----AATAAG-AGAGA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64108985 65 - 94057673 CATATATGACTC---------TAAAATC-T-------GAGCAGTAT--------GCCCAGAAATTCAGAAGACATCAG---ACAGAGG-AGAGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138555 58 + 42029645 CATACAGA---C---------TGAAATC-T-------GAGCAGTAT--------GCTCAGAAATTCAGAAGACAT-------CAGAAG-AGAGA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 80837 64 - 3408981 CA---------T--GTGACTGTGAAATC-T-------GAAAAGTAC--------ACCCAGAAATTCAGAAGAGGTCAGAGTACAGACATGG--- i loxAfr3.scaffold_113 C 0 I 223 s xenTro2.scaffold_1263 60539 51 + 112973 ----------------------GCCTCT-T-------TATTTTTAA--------AGCAAATATGTAAAAGAAAGTAAA---AAAAAAATACA-- i xenTro2.scaffold_1263 I 3 C 0 s tetNig2.chrUn_random 73750007 37 + 107808587 ----------------------gtgaac-tctcatgtgacTAGTTA--------AATCAGAGCTATAG-------------------------- i tetNig2.chrUn_random C 0 N 0 s oryLat2.scaffold3117 5560 26 + 10441 ----------------------gagagc-t-------------------------gtccacactttggacatga-------------------- i oryLat2.scaffold3117 C 0 N 0 s petMar1.Contig946 58342 44 - 63989 ------------------GGCAAAACAC-T-------GAAGAG-AC--------GCCAAATATTTTGACACTGATTTA---A------------ i petMar1.Contig946 C 0 N 0 e danRer6.chr3 199527 8276 - 60907308 I a score=244675.000000 s hg19.chrUn_gl000223 752 156 + 180455 ----TATAGGTAAATAAAGAG---AAAGTGTAAACGTAAGTAATTGAAAGAGCAGGGAAAATA-------------GAGCTATC-AGG-----AAATATTTGTGAAGGATAG-GTTGCTAGTCTTCTTCACCACCATTTAAACGGTATTT-----ACTGCCAGAATTATCTAAAAATGGCAATTTCAT s rheMac2.chr11 136916 161 - 134511895 ----TATAGATAAATAAGGAG---AAAGAGTAAATATAAGTAATTGAAAGAGTGGGGAAAATA-------------GAGCTATC-AGAAAGATAAGTATTTGTGAAGAACAG-GTTGCTAGTCTTCTTCACTACCATTTAAATGGTACTG-----ACTGCCAGAATTATCTAAAAATGGCAGTTTCAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 163658 156 - 136387465 ----TATAGGTAAATAAGGAG---AAAGAGTAAATATAAGTAATTGAAAGAGCAGGGAAAACA-------------GAGCTGTC-AGG-----AAGTATTTGTGAAGAATAG-GTTGCTAGTCTCCTTCACCACCATTTAAACGATATTT-----ACTGCCAGAATTATCTAAAAATGGCAATTTCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 136068 156 - 135371336 ----TATAGGTAAATAAAGAG---AAAGAGTAAACATAAGTAAGTGAAAGAGCAGGGAAAATA-------------GAGCTATC-AGG-----AAGTATTTGTGAAGGATAG-GTTGCTAGTCTTCTTCACCACCATTTAAACGGTATTT-----ACTGCCAGAATTATCTAAAAATGGCAATTTCAT i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_340349 2481 154 + 3190 ----AATGAGT------GGGG---GGGAAATGAATATAAGTAACTGAGAAAGAGGGGGAAATA-------------GAGCTATC-AGA-AGATAAGTAATTGTGACAGACAA-GTTGTTAGTCTTCCTCACCTCCATTTACGCTATATTT-----ACTGCCAGAATTATCTGAAAATGGCAGTTTCAT i tarSyr1.scaffold_340349 C 0 C 0 s cavPor3.scaffold_248 183702 149 + 667635 ----TGTGAATACATAAGGGG---AAAGAGTACATATAAATAAC----AAAGGAGAAGAAACA-------------------TC-AGG-AAAACAATAAATATGAAGAACAG-GTTGTTAATCTTCCTTGCTCCTA-TTAAAGTATATGT-----GCTGCCGTAATTCTCCAAAAATAGTAGTTTCAT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29901634 157 - 76506943 ----GGTAGGTGAATTAG-------GAGACTAAAAATAAGTAATTGAAGGTGAGGGAAAAACA-------------AAACTATT-AGGAAGATAAATAATTATAAAGGATAG-GTGGTTAATCATCCTCACCTCTATTTAAACTTTATTT-----GCTGTCAGAATGACTTGAAAATGACAACTGCAT i bosTau4.chr17 C 0 I 968 s equCab2.chr8 64109050 161 - 94057673 ----TGTAAGTGGATAGGGAG---AAAGACTAAATATAAGTAACTGAAGGTGAGGGTAAAATT-------------GAACTGTA-AGGAAGATACATATTTGAGCAGCATAG-GTTGCCAGTCTTCCTCACCTCCATTTAAACTTTATTT-----ACTGCCAGAATGACTTGAAAATGGCAATTTCAT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138613 156 + 42029645 ----TGTAGGTAAATAAG--G---AAAAACAAAGCAGAAGTAACTGAAGGTGAGGGGGAAA---------------AAGCAGGACAGGAAGATAAATACTTGGGAAGGATGT-GTT-CTCGTCTTCCCCAGCTCTACTTAAACTTT-TCT-----GCACCCAAAAGGACTTGAAAAAGACAAATTTAT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 81124 149 - 3408981 ----TATGGGTGAATAAG------AAAGATTATATGTAAGTAACTGAAGAAGAGGAAAAAA---------------AAACTATC-AGGAAGATAAGTAATTCGGAAGGATGG-GT-GTTAGTCTTC------ACCATTTAAAATGTGTTT-----ACTACCAGAATTGTCTGAAAATGGCAAGTTTAT i loxAfr3.scaffold_113 I 223 C 0 s xenTro2.scaffold_1263 60590 113 + 112973 ------------------------AGGAAATGTAAGAAAGTAATTGAGAGTAGAAATGCAATATTTATATATTCCTGAACTACT-ATG---------ACTTATGAA-----------CCAACTTCT-----------------GGCAGTT-----GATGTCAG-------CAAAAATGAGTCTTTCA- i xenTro2.scaffold_1263 C 0 C 0 s danRer6.chr17 3157505 169 - 49469313 aattagcaagtaaacaaagaaCACAGAAGAAAATTATGAAAAATTAAAATGACTCAAATTACA-------------GAAGAATC-ACA-----AACTTTCAGTGGTGTGCAGCGTTTTAAATCCTTCCCAATGTCAGTATCAGGACATTGGGACAATTATTGCAACATATTAAAAATTAGGATTTTAT i danRer6.chr17 n 8276 C 0 a score=22044.000000 s hg19.chrUn_gl000223 908 28 + 180455 AATGCTGCT-ACTAA-AC--AC--TAAG-TGTTCG s rheMac2.chr11 137077 30 - 134511895 AATGCTGCT-ACTAA-AC--ACTGCAAG-TGTTCA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 163814 30 - 136387465 AATGCTGCT-ACTAA-AC--GCTGTAAG-TGTTCG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 136224 24 - 135371336 AATGCTGCT-ACTAA---------TAAG-TGTTCG i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_340349 2635 32 + 3190 AATGCTGCTAACTAACAC--ACTGCAAG-TATTCT i tarSyr1.scaffold_340349 C 0 C 0 s cavPor3.scaffold_248 183851 28 + 667635 AATACATTT-AATAA-----ACTGCAAG-TATTCC i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64109211 28 - 94057673 AATGCTGCT-AATAA-----ACTACAAG-TGTTCC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138769 27 + 42029645 AATGCTGCT-AATAA-----ACTATGA--TGTTCC i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 81273 32 - 3408981 AATGTTGCC-AATAA-ACAAACTACAAG-TGTTCC i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_1263 60703 32 + 112973 AAAACCAC--AATAA-TCCAGTTACAAACTGTTGT i xenTro2.scaffold_1263 C 0 C 0 s danRer6.chr17 3157674 20 - 49469313 --TGCTTTT-ATTTA-GA--AATTTA--------- i danRer6.chr17 C 0 C 0 e bosTau4.chr17 29901791 968 - 76506943 I a score=65859.000000 s hg19.chrUn_gl000223 936 32 + 180455 TC--AGATTGCACAAAGACATTAGATTCTG--TTCA-- s panTro2.chr12 136248 32 - 135371336 TC--AGATTGCACAAAGACATTAGATTCTG--TTCA-- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163844 32 - 136387465 TC--AGATTGCACAAAGACATTAGATTCTG--TTCA-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137107 32 - 134511895 TC--AGATTGCACAAAGACATGAGATTCTG--TTCA-- i rheMac2.chr11 C 0 C 0 s papHam1.Contig620048 0 32 + 911 TC--AGATTGCACAAAGACATTAGATTCTG--TTCA-- i papHam1.Contig620048 N 0 C 0 s tarSyr1.scaffold_340349 2667 32 + 3190 TC--CAGTCCCACAAAGGCATCAGACTGTG--CTCA-- i tarSyr1.scaffold_340349 C 0 C 0 s cavPor3.scaffold_248 183879 32 + 667635 TC--AGGTCCCACAAAGACACCAAATTCTG--TTAG-- i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64109239 33 - 94057673 TCA-AGGTCCTGCAAAGACACCAGACTCTA--TTCA-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138796 30 + 42029645 TC--AGGTCCCACAAAAACATCAAA--CTG--TTCA-- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 81305 34 - 3408981 TT--GGGTCCCAAAAAGATATCAGATTCTGAATTCA-- i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_1263 60735 32 + 112973 CT--CTTTTGAAGCGAGCAATAATATTCTG--TCTA-- i xenTro2.scaffold_1263 C 0 T 1495 s danRer6.chr17 3157694 34 - 49469313 --ATAATCTGAACAAAACAAATCTCCTCGG--TTAATA i danRer6.chr17 C 0 C 0 e bosTau4.chr17 29901791 968 - 76506943 I a score=96273.000000 s hg19.chrUn_gl000223 968 57 + 180455 CTTAGT---GC------CTCTGG-A----ACATCTTATAATAA-----TCTAAAT---G----------AAAAAAAAAGCGGT--------TTCTC-------T s panTro2.chr12 136280 62 - 135371336 TTTAGT---GC------CTCTGG-A----ACATCTTATAATAACTTAATCTAAAT---G----------AAAAATAAAGCGGT--------TTCTC-------T i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163876 62 - 136387465 TTTAGT---GC------CTTTGG-A----ACATCTTATAATAACTTACTCTAAAT---G----------AAAAAAAAAGCGGT--------TTCTC-------T i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137139 64 - 134511895 TTTAGT---GC------CTTTGG-A----ACCTTTTACAATAACTTACTCTAAAT---G--------AAAAAAAAAAAGCAGT--------TTCTC-------T i rheMac2.chr11 C 0 C 0 s papHam1.Contig620048 32 63 + 911 TTTAGT---GC------CTTTGG-A----ACATCTTACAGTAACTTACTCTAAAA---G---------AAAAAAAAAAGCAGT--------TTCTC-------T i papHam1.Contig620048 C 0 C 0 s tarSyr1.scaffold_340349 2699 68 + 3190 CTTAGT---AT------CTTTGG-G----AGATCCTACAGTCACAT--TTTAAAT---G----------GAAAAGAAAGTGGTGGGGAGGGTTTCT-------G i tarSyr1.scaffold_340349 C 0 C 0 s cavPor3.scaffold_248 183911 62 + 667635 CTTAGT---GCT-----TTTTGT-A----ACAGCTTACAATAATCCATGCTAAAG---G----------AAGGAAAGAA-GAT--------GTCTC-------T i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64109272 60 - 94057673 CTT-AT---GC------CTTTGG-A----ACATCTTACAGTAACTTACTCTAAAT---A----------AATAAATAAAGGCT---------TGTC-------T i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138826 65 + 42029645 CTTAAT---GC------CTCAGGAA----ACATCTTACCATGACTTATTCTAAAT---A----------AATAAGTAAAAGAT------ATGTCTT-------T i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 81339 72 - 3408981 CTTACT---GC------CTTCAG-A----ACATCTTACAGTAACTTATTCTAAAT---AAAAAAAGGAAAAAAAAAAACCGGT--------TTCTT-------T i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_535 135718 78 + 816002 TTTGAT---GACAATCACGATAA-A----ATTTTCTTGAGAAACTTTTTTCACATTCAG----------AACAAGGAAAAAGT--------TTCTCTCTTTTGT i xenTro2.scaffold_535 n 1495 C 0 s danRer6.chr17 3157728 69 - 49469313 CTTAGTTTGGT------CTTATG-ATCGTAAATGTTAAATTAATCTTTTACAAAT---G----------GCAAAAGATACAGT--------CTCTA-------T i danRer6.chr17 C 0 n 0 e bosTau4.chr17 29901791 968 - 76506943 I a score=12865.000000 s hg19.chrUn_gl000223 1025 39 + 180455 GAAAACTT----GCCTATGATC----CTCC--AACTCTA-CCTTCTGAAC-------------- s panTro2.chr12 136342 39 - 135371336 GAAAACTT----GCCTATGATC----CTCC--AACTCTA-CCTTCTGAAC-------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163938 39 - 136387465 GAAAACTT----GCCTATGATC----CTCC--AACTCTA-CCTTCTGAAC-------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137203 43 - 134511895 GAAAACTA----GCCTATGATCCTCACTCC--AACTCTA-CCCTCTGAAC-------------- i rheMac2.chr11 C 0 C 0 s papHam1.Contig620048 95 43 + 911 GAAAACTA----GCCTATGATCCTCACTCC--AACTCTA-CCCTGTGAAC-------------- i papHam1.Contig620048 C 0 C 0 s tarSyr1.scaffold_340349 2767 40 + 3190 GGACACTTT--GGTCTATGATC------CT--AACTCTATTTTTCTGAAA-------------- i tarSyr1.scaffold_340349 C 0 C 0 s cavPor3.scaffold_248 183973 45 + 667635 GAAAACTGC--TGTCCATCACCCTCACTTT--AACCTCA-TCCTTTGAAC-------------- i cavPor3.scaffold_248 C 0 I 6921 s equCab2.chr8 64109332 45 - 94057673 GAAAGCTGT--CTTCTAAGCTCCTCACTCT--AACTCTA-CTTTCCAAAC-------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138891 39 + 42029645 GAAAATGAC--TGCCTATGATCCTC--------TCTCTA-CTTTCCAAAC-------------- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 81411 47 - 3408981 GATAACTAT--CTTCTGGTATACTCACTCTAAAACTGTA-CCTTCTAAAC-------------- i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_535 135796 36 + 816002 GGGTTCTCCGGTGTTTATGA------------AAGTCTC-TCTTATTAC--------------- i xenTro2.scaffold_535 C 0 C 0 s danRer6.chr15 46432014 49 - 47237297 ---------gtgatttttttttcttgttta--aa---ta-tttcccaaatgatgtttaatagag i danRer6.chr15 n 0 C 0 e bosTau4.chr17 29901791 968 - 76506943 I a score=60126.000000 s hg19.chrUn_gl000223 1064 38 + 180455 TAGTA--TGAAGCTCATATTTGGTATAATTATGTCTTTTc s panTro2.chr12 136381 38 - 135371336 TAGTA--TGAAGTTCATATTTGGTATAATTATGTCTTTTc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 163977 38 - 136387465 TATTA--TGAAGCTCATATTTGGTACAATTATGTCTTTTc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137246 38 - 134511895 TATTA--TGAAGCTCATATTTGATACAATTATGTCTTTTc i rheMac2.chr11 C 0 C 0 s papHam1.Contig620048 138 38 + 911 TATTA--TGAAGCTCATATTTGATACAATTATGTCTTTTc i papHam1.Contig620048 C 0 C 0 s tarSyr1.scaffold_340349 2807 37 + 3190 CATTA--TGAAGCTCATCTTTG-TACAATAGTGTCTTTCC i tarSyr1.scaffold_340349 C 0 C 0 s equCab2.chr8 64109377 24 - 94057673 TGGTGTCTGAAGCTCAACTTTGGT---------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3138930 40 + 42029645 TGACAAGTAAAGCTCAACTTTGGTATAACAGTGTCTTTCC i canFam2.chr26 C 0 I 188 s loxAfr3.scaffold_113 81458 40 - 3408981 TTGTATCTGAAACTCGGTCTTGGTATAACAGTGTCTTTCC i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_535 135832 38 + 816002 TAAAA--TGTATCTGACACTCATTGCAGCTGTATTTCCTA i xenTro2.scaffold_535 C 0 C 0 s danRer6.chr15 46432063 38 - 47237297 caagg--aaatgttcacagtatgtctgataatgttttttc i danRer6.chr15 C 0 C 0 e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=121958.000000 s hg19.chrUn_gl000223 1102 175 + 180455 --------tgggacctatttga--------gggtggaatgtgggaggagg-gtaaggattaaaaacctgac--tattgggcattat-gctgattacctgggtgacaaa----------at----tatctgcacaccaaacccccatgacac-acaatttgctcatgtaacatgagtaacct--ttaacctaa-------aatgaaagttggacagaaaa s panTro2.chr12 136419 179 - 135371336 --------tgggacctatttga--------gggtggaatgtgggaggagg-gtaaggattaaaaacctgac--tattgggcattat-gctgattacctgggtgacaaa----------ataaattatctgtacaccaaacccccatgacac-acaatttgctcatgtaacatgagtaacct--ttaacctaa-------aatgaaagttggacagaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 164015 173 - 136387465 --------tgagacctatttca--------gggtgtaatgtgggaggagg-gtaaggattaaaaacctgac----ttgggcattat-gctgattatctgggtgacaaa----------at----tatctgtacaccaaacccccatgacac-acaatttactcatgtaacatgagtaacct--ttaacctaa-------aatgaaagttggacagaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137284 171 - 134511895 --------tgggacctatttga--------gggtggaaggtgggaggagg-gtaaggattaaaaaccta------tcgggcattat-gctgattacctgggtgacaaa----------at----tatctgtacgccaaacccccatgacac-acaatttactcatgtaacatgagtaacct--ttaacctaa-------aatgaaagttggaaagaaaa i rheMac2.chr11 C 0 C 0 s papHam1.Contig620048 176 171 + 911 --------tgggacctatttga--------cggtggaaggtgggaggagg-gtaaggattaaaaaccta------tcgggcattgt-gctgattacctgggtgacaaa----------at----tatctgtacgccaaacccccatgacac-acaatttactcatgtaacatgagtaacct--ttaacctaa-------aatgaaaattgtaaagaaaa i papHam1.Contig620048 C 0 C 0 s xenTro2.scaffold_535 135870 160 + 816002 --------CATAATGTATTTTC-----------TGTTATGTGGGAATTTTCATCATGATTATAACCCGGAATTTGTAAGGCATTCTGGCTGCTCCCC---ATGATAGG----------AG----TATTTGTTCCCTGTATCTGTTCTGTAA-AGGGATTAATGCTGCAATCTGATTGGTTT--CCCCCTTTA-------CATGAAA------------- i xenTro2.scaffold_535 C 0 n 0 s danRer6.chr15 46432101 209 - 47237297 ttctggagaaagtcttatttgttttatttcggctagaataaaagcagttt-ttaatatttaaacaccattt----aaggtcaatat-tattagcccctttaagatatacattttctcgat----agtcttcagaacaaaccatcgttatacaatagcttgtctaattaccctaacctgcctagttaccctaattaccctagtgaagcctttacatgtca i danRer6.chr15 C 0 C 0 e tarSyr1.scaffold_340349 2844 0 + 3190 C e loxAfr3.scaffold_113 81498 0 - 3408981 C e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64109401 0 - 94057673 C e canFam2.chr26 3138970 188 + 42029645 I a score=198552.000000 s hg19.chrUn_gl000223 1277 125 + 180455 aTAAAGTGTCTTAA----TATCAAATGTGTTT----GACAAATATAAGCCCTAATT-TTCTCCATGCTGA--ATTTTAACGAGGGACTTCATCAT-TTTTAAA-TTGGAACAGAATTTTGAA-------ATAATATGAAGTGTCT s equCab2.chr8 64109401 126 - 94057673 ATACAGCCTCTTTC----CATCAAAGGCTTTTGATAGAGAAACACAGGCCCTGATTCTTCTCTAGGCTAA--ATTTTAGGAAGGGACTTTATCATGTTTTGG----GGAACAGAATTTTATG-------ATAATATGAAGG--TT i equCab2.chr8 C 0 C 0 s panTro2.chr12 136598 125 - 135371336 aTAAAGTGTCTTAA----TATCAAATGTGTTT----GACAAACATAAGCCCTAATT-TTCTCCATGCTGA--ATTTTAACGATGGACTTCATCAT-TTTTAAA-TTGGAACAGAATTTTGAA-------ATAATATGAAGTGTCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 164188 125 - 136387465 aTAAAGTGTCTTAA----TAGCAAATGTGTTT----GACAAACATAAGCCCTAATT-TTCTCCATGCTGA--ATTTTAACGATGGACTTCATCGT-TTTTAAA-TTGGAACAGAATTTTGAA-------ATAATATGAAGTGTCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137455 125 - 134511895 aTACGGTGTCTTAA----TATCAAATGTGTTT----GGCAAACATAAGCCCTAATT-TTCTCCATGCTAA--ATTTTAACAGTGGACTTCATCAT-TTTTAAA-TGGGAACAGATTTTTGAA-------ATAATATGAAATGTCT i rheMac2.chr11 C 0 C 0 s papHam1.Contig620048 347 125 + 911 aTACAGTGTCTTAA----TATCAAATGTGTTT----GCCAAACATAAGCCCTAATT-TTCTCCATGCTAA--ATTTTAACAATGGACTTCATCAT-TTTTAAA-TGGGAACAGAATTTTGAA-------ATAATATGAAATGTCT i papHam1.Contig620048 C 0 C 0 s loxAfr3.scaffold_113 81498 111 - 3408981 -------------------ATCAAATGGCTTTGATAGGTAAACATTAGGCCTAAT--TTCTCCAGTTTGA--ATTTTATGAATGGACTTCATCAT-TTTTTTATTTGGAGCACAATTCT----------ACAATATGAAGCTTTT i loxAfr3.scaffold_113 C 0 I 26 s tarSyr1.scaffold_340349 2844 110 + 3190 -------------------ATCAAATGCTTTTGATGGACAACCATAA-CCCTGATT-TTCTCCAGGCTGG--ATTTTAGGAATGGACTTCATCAT-TTTCTGA-TTGGAACAGAATTTTATA-------ATAATATGAGGTG--- i tarSyr1.scaffold_340349 C 0 C 0 s canFam2.chr26 3139158 109 + 42029645 -------------------ATCAGATGCTTTTAATAGTCAAACATAGGCCCTGATT-TTCTGCAGGCTAA--ATTTTAGGAAGGTATTTTATCAT-TTTCAG----GGAGGAAAACTATATA-------ATACTATGAAGA--CT i canFam2.chr26 I 188 C 0 s turTru1.scaffold_114229 61608 101 + 106394 -------------------ATCAGATGCTTTTGACAGATAAACACAG-----GATT-TTCTCCAGGCTAA--ATTTTAGTAAAGGATTTTATCAT-TTTGGG----AGAACAgagttttata-------ata-tacaaaag---- i turTru1.scaffold_114229 N 0 C 0 s danRer6.chr15 46432310 121 - 47237297 --------ctttaagctgtatagaagtgtctt----gaagaatatctagtctaata-ttatttactgtcatcatgacaaagagaaaatagatcag-ttttcag--------agagttattaacactgttatatttagaaatgt-- i danRer6.chr15 C 0 n 0 e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=16647.000000 s hg19.chrUn_gl000223 1402 28 + 180455 CCTTAAAAATACA----TTCATACTCTTggcc-- s papHam1.Contig620048 472 28 + 911 CCTTAAAAATACA----TTCATACTCTTggcc-- i papHam1.Contig620048 C 0 C 0 s rheMac2.chr11 137580 28 - 134511895 CCTTAAAAATACA----TTCATACTCTTggcc-- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 164313 28 - 136387465 CCTTAAAAATACA----TTCATACTCTTggcc-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 136723 28 - 135371336 CCTTAAAAATACA----TTCATACTCTTggcc-- i panTro2.chr12 C 0 C 0 s equCab2.chr8 64109527 30 - 94057673 TTTTAAAAACATAGTCTTatatccttgt----tc i equCab2.chr8 C 0 I 108 s turTru1.scaffold_114229 61709 26 + 106394 tttaaaaaacata----tctttattcttag---- i turTru1.scaffold_114229 C 0 I 7613 s canFam2.chr26 3139267 25 + 42029645 TTTTAAAAATATA----TATTCACTCAT----A- i canFam2.chr26 C 0 I 1 s tarSyr1.scaffold_340349 2954 4 + 3190 ----------------------------ggcc-- i tarSyr1.scaffold_340349 C 0 C 0 e loxAfr3.scaffold_113 81609 26 - 3408981 I e danRer6.chr15 46432431 0 - 47237297 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=128484.000000 s hg19.chrUn_gl000223 1430 126 + 180455 gggcgcagtggctcacgcctgtaatctcagcactttgggaggccaaggcgggcagat--catgaggtcaggagatcgagaccagcct-ggctaacacagtgaaaccccgtctctactaagaatacaaaa s panTro2.chr12 136751 126 - 135371336 gggcgcagtggctcacgcctgtaatctcagcactttgggaggccaaggcgggcggat--catgaggtcaggagatcgagaccagcct-ggctaacacagtgaaaccccgtctctactaagaatacaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 164341 126 - 136387465 gggtgcagtggctcacgcctgtaatctcagcactttgggaggccaaggcgggcggat--catgaagtcaggagatgaagaccagcct-ggctaacacggtgaaactccgtctctactaagaatacaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 137608 117 - 134511895 aggcgcagtggttcacacctgtaatctcagtactttgggaggccaaggcaggcggat--cacgaggtcaggagattgagatcagcct-ggctaacacggagaaaccctgtctctactaag--------- i rheMac2.chr11 C 0 I 305 s papHam1.Contig620048 500 126 + 911 aggcgcagtggttcacacctgtaatctcagtactttgggaggccaaggcaggcggat--cacgaggtcaggagattgagatcagcct-ggctaacacggagaaaccctgtctctactaagaatacaaaa i papHam1.Contig620048 C 0 N 0 s tarSyr1.scaffold_340349 2958 129 + 3190 aggcatggtggctcatgcttgtaatcccagcaatttgggaggccaaagggggaggattgcttgagcccaggatttcaagacaagcctgggcaaaaacagcaagacctcatctctacaaaaaaagtttaa i tarSyr1.scaffold_340349 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 81609 26 - 3408981 I e danRer6.chr15 46432431 0 - 47237297 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64109557 108 - 94057673 I e canFam2.chr26 3139292 1 + 42029645 I a score=68123.000000 s hg19.chrUn_gl000223 1556 101 + 180455 aatt------agccaggcgtggtggcatgcacct-gtagtcccaggtactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcggtgaaccg s panTro2.chr12 136877 101 - 135371336 aatt------agccaggcgtggtggcatgcgcct-gtagtcccaggtactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcggtgaaccg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 164467 101 - 136387465 aatt------agccaggtgtggtggcatgcacct-gtagtcccaggtactcaggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgaactg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 138030 100 - 134511895 aatt------agccgggcatggtggcatgcacct-gtagtcccaggtactcaggaggctgaggcaggagaatcgcttgagccttggaggtagaggttgcggtg-acca i rheMac2.chr11 I 305 C 0 s tarSyr1.scaffold_340349 3087 102 + 3190 aattttgaaatgctgggtgtggtggcacacacctggtagtccctgctattcgggaggtcgaggagggaggatcacttgagcccagaaggttgaggctgcagt------ i tarSyr1.scaffold_340349 C 0 N 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 81609 26 - 3408981 I e danRer6.chr15 46432431 0 - 47237297 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64109557 108 - 94057673 I e canFam2.chr26 3139292 1 + 42029645 I a score=28128.000000 s hg19.chrUn_gl000223 1657 66 + 180455 agattgcgccactgcactccaacctgggtgacagagcgagagtctgtctcaaaaaaaaaaaaaaaa s rheMac2.chr11 138130 61 - 134511895 agactgtgccactgcactccagcctgagtgacagagcgagactctgtctcaaaaaaaaaaT----- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 164568 64 - 136387465 agattgcgccagtgcactccaacctgggtgacagagcgagactctgtctcaaaaaaaaaaaaaT-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 136978 66 - 135371336 agattgcgccactgtactccaacctgggtgacagagcgagagtctgtctcaaaaaaaaaaaaaaaa i panTro2.chr12 C 0 I 2 s danRer6.chr4 26815157 58 - 71658100 aaattaaatctatgcacaacaatctg---tccaggtcga-----tgtcctcagcagtaaatacaTG i danRer6.chr4 n 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 81609 26 - 3408981 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64109557 108 - 94057673 I e canFam2.chr26 3139292 1 + 42029645 I a score=76631.000000 s hg19.chrUn_gl000223 1723 119 + 180455 TTG--------TATCTTTAGGAAAttcttat---taggaaatctacacttaa---------gtgtatagaggtaaaaggccat-----aatatatagaacttattctcaaatgtttcag--aagaaaaatcatatgccaaatgata----- s canFam2.chr26 3139293 93 + 42029645 TCC--------AATTCTTAGg-----------------------------aa---------atacttgggggtaaaaagccat-------tatatataatttattctcagatgcctcagagaaaaaaaatcatataccaaatgatg----- i canFam2.chr26 I 1 I 27 s rheMac2.chr11 138191 106 - 134511895 TCA--------tatctttagg-----------------aaacctacacttaa---------gtgtatagcggtaaaaagccat-----aatatataaaacttattctcaaatgtttcaga-aaaaaaaatcatacgtcaaatgata----- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 164632 120 - 136387465 TCAT-------TATCTTCAGGAAAttcttat---tagaaaatctacacttaa---------gtgtatagaggtaaaaggccat-----aatatatagaacttattctcaaatgtttcag--aagaaaaatcatatgccaaatgata----- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 137046 119 - 135371336 TCG--------TATCTTTAGGAAAttcttat---taggaaatctatacttaa---------gtgtatagaggtaaaaggccat-----aatatatagaacttattctcaaatgtttcag--aagaaaaatcatatgccaaatgata----- i panTro2.chr12 I 2 C 0 s loxAfr3.scaffold_113 81635 115 - 3408981 ---TGtatctttattcttaggaaatac-----------agaaatacacacca---------gtatttaggagt-aaggaccat-----gatgtatacaatttaaccacaaatgtttcaa--aaagtaaatcatactccaagtggaa----- i loxAfr3.scaffold_113 I 26 C 0 s otoGar1.scaffold_63055.1-7586 6 106 + 7586 ---------------------AAgtttttatttgtaagaaacatacacttat---------gaaagaaggggtaaaatgccat-----aatatataaaactta---tcaaatgtttcag--aaaaaaagtcatataccaaatcata----- i otoGar1.scaffold_63055.1-7586 N 0 C 0 s danRer6.chr4 26815215 132 - 71658100 --------GAGCACGTTTAAACAAATCATAT---TGTAAGGAAAATACTTAATCCATTATGATAAATAGACTTAAAATGACCTTTTTGAATAAAAAAAGTTTA-------AAGTTTTATT-GAGATGGATTGTTGGTGATTGTATAGGTTT i danRer6.chr4 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64109557 108 - 94057673 I a score=156440.000000 s hg19.chrUn_gl000223 1842 201 + 180455 -aggcaaatgt---------gtacaagcaa-aggtga---------------atgtgaacattctttgtac---tatt-----cttataac---ttttacataagcttaaaa----ttCCCAATAACATCTAAAAACGCATTTGTCATTTCAGTCAAACATACG--TTGGCAC--------TT-------------TGGGAAAAATGTTATCTG----TTATTGCT-CTCACAGTAAGCTTTTAAGG-AAAGGTAAATAGACTGTTTCTTT s panTro2.chr12 137165 201 - 135371336 -aggcaaatgt---------gtacaagcaa-aggtga---------------atgtggacattctttgtac---tatt-----cttataac---ttttacataagcttaaaa----ttCCCCATAACATCTAAAAACGCATTTTTCATTTCAGTCAAACATACG--TTGGCAC--------TT-------------TGGGAAAAATGTTATCTG----TTATTGCT-CTCACAGTAAGCTTTTAAGA-AAAGGTAAATAGACTGTTTCTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 164752 201 - 136387465 -aggcaaatgt---------gtataagcaa-aggtga---------------atatggacattctttgtac---tatt-----cttataac---tttcacataagcttaaaa----ttCCCAATAACATCTAAAAATGCATTTTTCATTTCAGTCAAACGTACG--TTGGCAC--------TT-------------TGGGAAAAATGTTATCTG----TTATTGCT-CTCACTGTAAGCTTTTAAGG-AAAGGTAAACAGACTGTTTCTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 138297 196 - 134511895 -aggcaaatgg---------gtataagcaa-agatga---------------atgtgggcattctttgtac---ta----------acaac---ttttacataagtttaaaa----ttCCCAGTAATATCTAAAAATATATTTTTCATTTCAGTCAAATGTACA--TTGACAC--------TT-------------TGGAAAAAATGTTATCTG----TTATCACT-CTCACTGCAAGCTTTTAAGG-AAAAGTAGAATGTACATTTCTTT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 112 232 + 7586 -aggcaaatgga---gcaaaatgtcagtaa-aggtgaatgtaagcgtatagtatgtgggtattctttgtac---tatt-----catgtaac---ttttatgtaattttaaaattatttcccaataatatctagaaattcattttTC-------TCTAACATACACTTCAACACTTATTTTGTT-------------TAGAGGGCATTCTATCTG-TCATTATCACT-TTAGCTGTAAGCTTTCAAGGAAAAAGTAAATAGACCTCATATT- i otoGar1.scaffold_63055.1-7586 C 0 C 0 s equCab2.chr8 64109665 199 - 94057673 -aggtagatgt---------g----agtaa-agg-gc---------------atatgggtattctttgtac---gatt-----cctgcaac---ttttttggaagtttaaaattc-tttccaaataCATTAAAAAATGCATTTTT------CATAAAACACACT--TTGACAT--------TTAT-----TTTGTTTGGGGGAAATGCTATCTT----TTATTACCACTGACTGTAAGCTTCTAGGG-AAAAGTAAATAGACCTCATA--- i equCab2.chr8 I 108 I 2 s canFam2.chr26 3139413 188 + 42029645 -agcggaattt---------g----agtaa-aga-gc---------------ttatgggtattctttgcac---tatt-----cttgaaag---ttttctggaagtttaaaatta-tttccaaacacactaaaaaattcatttTT----TCTCTAAAACACACT--TTAACAT--------TT------------------TAAATACTTTTAT----TTATTATCACTGACCATAAGCTTCTAAGG-AAAAGTAAATAGATTTCTTt--- i canFam2.chr26 I 27 I 174 s loxAfr3.scaffold_113 81750 215 - 3408981 -aagtaaatggg---gcaaagtgttaacaataggtaa---------------atttgggtaaaggggaaacaggtatt-----cttacacc---ttttctataaatttttaatta-ttttcaaacacatccaaaattttatttTT-----CCCTAAAACACACT--TAGATAA--------TTACCAATATTTTGTTTGGGAGAATACTATCTT----TTATCATT-CTGACTGGAAGCTTCTGCAG-AGAAGTAAACAAACTT------- i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 26815347 197 - 71658100 TGGCCAGACTGGTTAACACAatatgaacaa-ag--ga---------------aaatgaacacttgtttaaaaaagatttaagacctacaacacaattttagtaaatttaaga----cttttaag---gcctaaaaatttgatttt----ggaatttaagacata--ttaagac--------tc--------------cgtggaaaccctgtttaaacacaatagcC-CTGGTAATTAGTTATTATGA-TAAT------------------- i danRer6.chr4 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=315012.000000 s hg19.chrUn_gl000223 2043 300 + 180455 GATGAAA------TATTTAATTCATATCT--------CAATAATGGATCAAGA----TCTGT--ACCTATATGGTAGGTATAC-AAAA----------------------------------------TACATGAAAGATCAAGA-T------------------GGGGAGGCAGT-GAAACA----------------GCTTTTAAAATA-----------ATTGTGTCAATGCAGATAAA-ACATTAAATTCCT--TTCTTGCCTCTTCTTTAAACCAATTCTGTATCTACTGAGTACCTAAATAAG-------AACTCT-GT-AGATGTGAACTGAGTAATTCTTTTCAGGAACTGAGAATATAAAT----AGGGAAAGAGA----ACACAGAAG----AAAA-----TAT----TGATATAAGACACAAGAGCAAGT s panTro2.chr12 137366 300 - 135371336 GATGAAA------TATTTAATTCATATCT--------CAATAATGGATCAAGA----TCTGT--ACCTATATGGTAGGTATAC-AAAA----------------------------------------TACATGAAAGATCAAGA-T------------------GGGGAGGCAGT-GAAACA----------------GCTGTTAAAATA-----------ATTGTGTCAATGCAGATAAA-ACTTTAAATTCCT--TTCTTGCCTCTTCTTTAAACCAATTCTGTATCTACTGAGTACCTAAATAAG-------AACTCT-GT-AGATGTGAACTGAGTAATTCTCTTCAGGAACTGAGAATATAAAT----AGGGAAAGAGA----ACACAGAAG----AAAA-----TAT----TGATATAAGACACAAGAGTAAGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 164953 303 - 136387465 GATGAAA------TATTTAATTCATATCT--------CAATAATGGATCAAGA----TCTGTACACCTATATAGTAGGTATAC-AGAA----------------------------------------TACATGAAAGATCAAGA-T------------------GGGGAGGCAGT-GAAACA----------------GCTGTTAAAATA-----------ATTGTGTCAATGCAGATAAA-ACTTTAAATTTCT--TTCTTGCCTCTTCTTTAAACCAATTCTGTATCTACTGAGTACCTCAATAAG-------AGCTCT-GTAAGATGTAAACTGAGTAATTCTTTTCAGGAACTGAGAATATACAC----AGGGAAAGAGA----ACACAGAAG----AAAA-----TAT----TGATGTAAGACACAAGAGCAAGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 138493 288 - 134511895 GATGAAG------TATTTAATACATATCT--------CAACAATGGATCAAGA----TCTGT--ACCTATACAGTAGGTACAC-AAGA----------------------------------------TACATGAAAGATTAAGA-T-----------------AGGGGAGGCAGT-GAGACA----------------GCTATTAAAATA-----------ATTATGTCAATACAGATAAA-ACTTTAAATTCCT--TTCTTGCCTCTTCTTTAAACCAACTCTGTATCTACTGAGTACCTAAATAAG-------AGCCCT-GT-AGATGTAAAGTG-------------AGGAACTGAGGATAGAAAT----AGGGAAAGAGA----ACACAGAAG----AAAA-----TAT----TGATATAAGACACAAGAACAAGT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 344 280 + 7586 -------------TATTTAATACCTACCT--------CAGTAATGAATCAAAA----TTTAC--ACCTGTATAGTAGGTACACAAAAA----------------------------------------TACATGACAAATAAGGA-T-----------------TAAGGATGCAGT-GAAATA----------------GTTGTTAGTATG-----------ATGAACTCAGTAACAAAAAA-ATCTTAAATTTCT--TTCCTGTCTCTTCTATAAATCAATTCCATACCTA--AAGTACCTAG----------------------GGATATAAACCGAGTAATTCTCTTCAGGAGCTGAGAATATAAAT----A--GAAAGAGA----ACACAGAAATCATTAGT-----TAA----TCATATAAGACACAAGAT--AGT i otoGar1.scaffold_63055.1-7586 C 0 C 0 s equCab2.chr8 64109866 282 - 94057673 -------------TCTTTAACACATATCT--------AAGGAATGAATCGAGA-------------------GATAGGCAAAT-AAAA-------------------------------------------ATGGAAGATTAGGA-T------------------GGGGAGGCAGT-GAAATA----------------GCTGTTAAGAAAACG--------ATGATCTCAGTAAAGAGAAA-ACCTTAAATTACT--CTCCTGACTCTTCTATAAACCAGTTCCATACCTACTGAGCACCTCAGTAAG-------AGCCCT-GG-GG--ATAAACTCAATAATTCTCTTCAGGAGCTGAGAATATAAAT----AGGGAGATAAAGAGGACACAGGAA----AAAA-----CAA----TGATATAAGAAATGAGAGTAAGT i equCab2.chr8 I 2 C 0 s canFam2.chr26 3139775 284 + 42029645 ---GAATCCCAGACCTTTCTGTAATATCT--------GAACAAAGAATCAAGA----TCTAT--ACCTACATGGTGGGCATG--ATAA-------------------------------------------ATGAAAGATTAGGATT------------------GGGGAGGCAGT-AAAATA----------------ATAGTTAAGAAA-----------ATGGTCTCAATAAAGAGAAA-ATCTTAAATTACT--TTCCTGGCTCCTCTATAAACCAATTCCCTGCCTACTGAGCAATTCAGTAAG-------AGCTGT-GG-GGATATAAACAGAATAATTCTCTTCATGAGCTGAGA---------------------------ACACAGAAG----AAAA-----CAATTACTGATATAAGAAACAAGA-TAAGC i canFam2.chr26 I 174 C 0 s loxAfr3.scaffold_113 81965 315 - 3408981 GATATA-------TATTTAATAACTATCT--------CAGCACCCAATTGAGA----TCTAT--ACCTCAata-taaatatat-ataaaaatataaatatatctacatatatgtacatacatatTAGGCACATAAAAGACTAGTA-T------------------TGGGAGGCAGTAGAAACA----------------GCTGCTAAGAAA-----------ACTG------------------------------------TGAGTCCTCCATGAACGAATTCCCTATCTATTGAGCACTTTAGTAAG-------AACCCT-GG-GGATATAAACTGAGTAATTCTCTTCAGAAGCTTAGCACATAAATTGTAAGACAAAGAGA----ACACAGAAG----AAAATTAATTAA----TGATATAAGACATGAGACTAAGT i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 26815544 348 - 71658100 GATGTAATTCT--AATTCAGATACTATCTGTGAGAACTAGTAACAACTAGAAACAAGTTTAA--TCCCATGAGGT---TAATT-AAAA-------------------------------------------AAGGGGAATTGGGA-TCAATGGGACATATGCAAGTGGAAAGTACT-AAGCTAACACTATCACTGCAACACTGTGAGAATACTGAAGGTCAAATATCGTCAGCTCAGTTAAACGTTTTTAATTTATGGTTTTTGTTTATTTTATATA--------GTGCC-----AGTGTTCAAGGAAGCTTTACAAACAGTAGT-AGAACAAGAAAAAGCAATAACCTTAAGAAG----GAAGAGAAAA----TGGGAGACTAA----TAATAGAT-----AAAA-----TAA----TGACATAAGACACGAGAACAAGT i danRer6.chr4 C 0 n 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=113138.000000 s hg19.chrUn_gl000223 2343 80 + 180455 TCATTATACTTAGGGTAAAAATTGTATAAAAGACCAGAGATAAGATTT--AAAAATCCACTCCAATAAAT------------AAAG----GCTTCATC s panTro2.chr12 137666 80 - 135371336 TCATTATACTTAGGGTAAAAATTGTATAAAAGACCAGAGATAAGATTT--AAAAATCCACTCCAATAAAT------------AAAG----GCTTCATC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 165256 80 - 136387465 TCATTATACTTAGGGTAAAAATTGTATAAAAGACCAGAGATAAGATTT--AAAAATCCACTGCAATAAAT------------AAAG----GCTTCATC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 138781 80 - 134511895 TCATTATACTTAGGGTAAACATTGTATCAAAGACCAGAGATCAGATAT--AAAAATCCACTGCAGTAGAT------------AAAG----GCTTCATC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 624 85 + 7586 TCATTATACTTCAGGTAAAAACTGCATAAAAGATGAGGGACAGGATATA-AAAAAACCACTGCAACAGATT--------AAGAAAG----GTCTCATC i otoGar1.scaffold_63055.1-7586 C 0 I 96 s equCab2.chr8 64110148 84 - 94057673 TCATTATACTTAGAGTAAAAATTGTATAAAGGCTCAGAGACAAGACAT--AAAAATTCACTACAACAGAT------------AAAGAAAGGCTTCATC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3140059 67 + 42029645 CTATTATACTTAGAGTAAAAATTGTATGAAAGACCAG-----AAATAT--AAAAGTTCACTGCAAAAACA------------AGAG------------ i canFam2.chr26 C 0 I 789 s loxAfr3.scaffold_113 82280 90 - 3408981 TTATTACA----GAGTAAAAACTGAACAAAAGATTAGAGATAAGAGAGAGAAAAATCCACTGCAACAGATTTTAAAAAAAGAAAAG----GCTTGATC i loxAfr3.scaffold_113 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e danRer6.chr4 26815892 0 - 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=57884.000000 s hg19.chrUn_gl000223 2423 55 + 180455 TAGAAATGCTTCA----AGGAAACTTACTGGGAACTGAAATATAC------------CAAGTGAACCTGGA- s rheMac2.chr11 138861 55 - 134511895 TAGCAGTGCTTCA----AGGAAATTTGTTGGGAACTGAAATACAC------------CAAGTGAACCTGGA- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 165336 55 - 136387465 TAGAAATGCTTCA----AGGAAACTTGTTGGGAACTGAAATATAC------------CAAGTGAACCTGGA- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 137746 55 - 135371336 TAGAAATGCTTCA----AGGAAACTTATTGGGAACTGAAATATAC------------CAAGTGAACCTGGA- i panTro2.chr12 C 0 C 0 s equCab2.chr8 64110232 70 - 94057673 TAGAAAGGCCTCA-CTGAGGAAAGTAGTTGGGAACTGAAACACAGTACAGCATACACCAGGTGGTTCTGGA- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3140915 69 + 42029645 TAAAGAGGCTTCACCTGAGGAAATTAGTTGGAAACTGAAATATAG--CAGGATGTATCAGGTGAACCTAGA- i canFam2.chr26 I 789 C 0 s loxAfr3.scaffold_113 82370 57 - 3408981 TAGAAAGCCTTCA-TCAAAGAAACTAGTTGGGAACCGAAATAC--------------CATATGAAACCTGAG i loxAfr3.scaffold_113 C 0 C 0 e otoGar1.scaffold_63055.1-7586 709 96 + 7586 I e turTru1.scaffold_114229 61735 7613 + 106394 I e danRer6.chr4 26815892 0 - 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=3622.000000 s hg19.chrUn_gl000223 2478 36 + 180455 CATT----AAAAAAAAATAG--AAAGCTGTTGGggccgggtg s panTro2.chr12 137801 37 - 135371336 CATT---AAAAAAAAAATAG--AAAGCTGTTGGggccaggtg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 165391 37 - 136387465 CATT---AAAAAAAAAATAG--AAAGCTGTTGGggccaggtg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 138916 41 - 134511895 CATTTAAAAAAAAAAAATAGAAAAAGCTGTTGGggccgggt- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 805 23 + 7586 ----CAACCAAaaaaaatag---------------ccaggtg i otoGar1.scaffold_63055.1-7586 I 96 C 0 s equCab2.chr8 64110302 38 - 94057673 CATT----TACTGCTATTAGAAAGAGCTGTTGGAGTTAGCTG i equCab2.chr8 C 0 I 15 s canFam2.chr26 3140984 14 + 42029645 CATT----TAATGATATT------------------------ i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 82427 19 - 3408981 CATT----TAATGACACTAG--AAA----------------- i loxAfr3.scaffold_113 C 0 I 7 e turTru1.scaffold_114229 61735 7613 + 106394 I e danRer6.chr4 26815892 0 - 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=24767.000000 s hg19.chrUn_gl000223 2514 38 + 180455 tggtggctcatgcctgtaatcca---actttgggaggctga s otoGar1.scaffold_63055.1-7586 828 41 + 7586 ttgtggcgggcacctgtagtcccagctacttgggaggctga i otoGar1.scaffold_63055.1-7586 C 0 C 0 s rheMac2.chr11 138957 39 - 134511895 --gtggctcatgcctgtaatctgaacactttgggaggctga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 165428 41 - 136387465 tggtggctcatgcctgtaatccaaacactttgggaggctga i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 137838 38 - 135371336 tggtggctcatgcctgtaatcca---actttgggaggctga i panTro2.chr12 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82446 7 - 3408981 I e danRer6.chr4 26815892 0 - 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110340 15 - 94057673 I e canFam2.chr26 3140998 0 + 42029645 C a score=39521.000000 s hg19.chrUn_gl000223 2552 96 + 180455 ggctggaggatcacttgagtcctagagttt---gagacc------agccta---aacaacata--------------gtgacaaag--tgagacccc---tgtctttaccaaaaaaaaaaaaaaaaa s panTro2.chr12 137876 96 - 135371336 ggctggaggatcacttgagtcctagagttt---gagacc------agccta---aacaacatagt------------gtgacaaaa--tgagacccc---tgtctttacc--caaaaaaaaaaaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 165469 95 - 136387465 ggctggaggatcacttgagtcctagagttt---gagacc------agccta---aacaacata--------------gtgacaaag--tgagaccccttttttctttacc----aaaaaaaaaaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 138996 93 - 134511895 ggctggaggatcacttgtgtcctggagttt---gagacc------agcctg---aacaacata--------------gtgacaaag--tgagacctg---tgtctttacc---aaaaaaaaaaaaaa i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 869 109 + 7586 ggcaggagactcacttgagcccaggagttg---gaggttgctgtgagctgt---aatgccacggcactctgcccagggggatagct--tgaggctc----tgtct----c--aaaaaaaaaaaaaaa i otoGar1.scaffold_63055.1-7586 C 0 I 87 s danRer6.chr4 8336773 88 - 71658100 AACTGGAGTAAGGTTTGTTTTAAAACGTTTACCGATATA------AGCCTATTTAAAGTTAAA--------------GTTCTAAAGTTTTAGA-------TTTTTTTATA--CAAAT---------- i danRer6.chr4 n 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82446 7 - 3408981 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110340 15 - 94057673 I e canFam2.chr26 3140998 0 + 42029645 C a score=52361.000000 s hg19.chrUn_gl000223 2648 116 + 180455 ttaaaacttaggcacggtactgtgcatctgtacttctagctacttgacagagtgacctggaaggactgcttgaacccaggaatt--caggcaacagAATGTCACCCTGTCTTAAAACA s rheMac2.chr11 139089 116 - 134511895 aaaaaatttaaacatagtagtgtgcatctgtacttctagctacttggcagagtaacgtggaaggactgcttgaacccaggaatt--caggcaacagAATGTCACCCTGTCTTTAAAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 165564 116 - 136387465 ttaaaacttaggcatggtactgtgcatctgtacttctagctacttgacagagtgacctggaaggactacttgaacccaggaatt--caggcaacagAATGTCACCCTGTCTTAAAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 137972 116 - 135371336 ttaaaacttaggcacggtactgtgcatctgtacttctagctacttgacacactttcctggaaggactgcttgaacccaggaatt--caggcaacagAATGTCACCCTGTCTTCAAAAA i panTro2.chr12 C 0 C 0 s danRer6.chr4 8336861 95 - 71658100 TTAAATTATGTTCCTGCTGTTGGACATAT-TATTTTAACC--CTTTATACAAC------GCAGTACTATTTTATTCCCAGTATTTACAGGCAA------------TTGTTTGAATA-- i danRer6.chr4 C 0 C 0 e otoGar1.scaffold_63055.1-7586 978 87 + 7586 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82446 7 - 3408981 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110340 15 - 94057673 I e canFam2.chr26 3140998 0 + 42029645 C a score=13592.000000 s hg19.chrUn_gl000223 2764 39 + 180455 AA------GGGGGTgttggacaggtaagatgttattgttagatat s otoGar1.scaffold_63055.1-7586 1065 38 + 7586 ------AAAAAGCTgttggataagtaaaaaatta-aattaagtaa i otoGar1.scaffold_63055.1-7586 I 87 C 0 s rheMac2.chr11 139205 45 - 134511895 AAAgggggggggttgttggacaggtacgatgttatcattagatat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 165680 44 - 136387465 AAA-GGgggggggtgttggacaggtacgatgttattgttagatat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 138088 39 - 135371336 AA------AGGGGTgttggacaggtaagatgttattgttagatat i panTro2.chr12 C 0 C 0 s danRer6.chr4 8336956 37 - 71658100 -----AGGTAGGTTAACAGAAAAGTGTGTAATAAGTATTAAT--- i danRer6.chr4 C 0 n 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82446 7 - 3408981 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110340 15 - 94057673 I e canFam2.chr26 3140998 0 + 42029645 C a score=134253.000000 s hg19.chrUn_gl000223 2803 247 + 180455 gaagaataagctcaggtgttctcttgcatggtaaggtgattatagctaataataatgtatctttcaaaat----aga-agagagaagttttgaatgctcttatcacatagaaa----tgatacacatttgaaatgatacacatttgagataatggatttgctaattaattttatatgatcattatacaatgtatacatgtattgaaacatcacattgt-----------acttcataaac--gtacag----tcattgtgtcaattaaa------------------aaga s otoGar1.scaffold_63055.1-7586 1103 254 + 7586 gaggaataagttttggtcttttattgcatagtagggtgactatatttaacaataacatatatttcaaaatagctaga-agagggga-ttttgaatgtccttgtcacaaa--------------------gaaatgataaatg-ttgaggtgatggatttgctaattaccctaatatgatcattacac---ttatatatatataaaaacatcacattgc-----------actccataattgtgcacagtaactaattatgtgaattaaaagtaaaaTTAAGtaaaataaaa i otoGar1.scaffold_63055.1-7586 C 0 C 0 s rheMac2.chr11 139250 233 - 134511895 gaagaataagctcaagtgttctcttgcatggtagggtgattatagttaataa----gtatctttcaaaat----aga-agagagaagtttttaatgctcttgtcacata--------------------gaaatgatacacatttgagataatggatttgctaattaactttatatgatcattatacaatgtatacatgtattgaaacatcacattgt-----------acttcataaacatgtacag----tgattgtgtcaattaaa--------------aaaaaaaA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 165724 226 - 136387465 gaagaataagctcaggtgttctcttgcatggtagggtgattatagctaataacaatgtatctttcaaaat------------agaagttttgaatgctcttgtcacata--------------------gaaatgatacacatttgagataatggatttgctaattaactttatatgatcattatacaatgtatacatgtattgaaacatcacattgt-----------acttcataaacatgcacag----tcattgtgtcaattaaa------------------aaga i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 138127 246 - 135371336 gaagaataagctcaggtgttctcttgcatggtaggatgattatagctaataataatgtatatttcaaaat----aga-agagagaagttttgaatgctcttgtcacatagaaa----tgatacacatttgaaatgatacacatttgagataatggatttgctaattaactttatatgatcattatacaatgtatacatgtattgaaacatcacattgt-----------acttcataaacatgtacag----tcattgtgtcaattaaa---------------------a i panTro2.chr12 C 0 C 0 s danRer6.chr4 44135676 260 + 71658100 ggagaacaaaatcaaaaaccacccagctatatagagtccagacagcctataacaagctgtctgtataaac----acacacacataagcaccaagcacacaca-cacagacaaagctctctctctcattcgcactaacacaca-cagcaacaaacaagcaAGGAATCAACAAAAGACAGGAATCCCCAAACAAATACATTCATAAAAATATCTCCTTACAAGAGGAGAAAAACTCAAATAC---TACTA----CTAATACTACCACtaat------------------aata i danRer6.chr4 n 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82446 7 - 3408981 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110340 15 - 94057673 I e canFam2.chr26 3140998 0 + 42029645 C a score=13315.000000 s hg19.chrUn_gl000223 3050 33 + 180455 agaAAAAA--------------------TGGGGTTAATTGCACAGATTTAGT-------------------G s canFam2.chr26 3140998 37 + 42029645 AGAAAAAG----------------CCACTGGAGTTAACTGCATAGATTCAGT-------------------A i canFam2.chr26 C 0 I 3 s otoGar1.scaffold_63055.1-7586 1357 72 + 7586 aataaaaataaaataaCCTAAAAGCTGTTGGAATTAATTACATAGATTTATTAATACTAAGGTATTTTAAGG i otoGar1.scaffold_63055.1-7586 C 0 C 0 s rheMac2.chr11 139483 27 - 134511895 AGAAAAAA--------------------TGGGGTTAATTCCACAGAT------------------------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 165950 33 - 136387465 aaaAAAAA--------------------TGGGGTTAATTGCACAGATTTAGT-------------------G i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 138373 31 - 135371336 agaaaaAA--------------------TGGGGTTAATTG--CAGATTTAGT-------------------G i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 82453 25 - 3408981 ----------------------------TGAAGTTAATTGCATAGATTCAGT-------------------A i loxAfr3.scaffold_113 I 7 I 3 s danRer6.chr4 44135936 30 + 71658100 -ataataa--------------------taataataatCATCCCAATTTAA--------------------- i danRer6.chr4 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110340 15 - 94057673 I a score=515.000000 s hg19.chrUn_gl000223 3083 15 + 180455 TA---TTTGC-CAT--------ATTTC s panTro2.chr12 138404 15 - 135371336 TA---TTTGC-CAT--------ATTTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 165983 18 - 136387465 TATTCTTTGC-CAT--------ATTTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 139510 18 - 134511895 TA---TTTGC-CATATG-----ATTTC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 1429 16 + 7586 TA---TTTAC-CAG--G-----ATTTC i otoGar1.scaffold_63055.1-7586 C 0 C 0 s canFam2.chr26 3141038 18 + 42029645 AA---CCTGC-CATATG-----GCTTC i canFam2.chr26 I 3 C 0 s equCab2.chr8 64110355 18 - 94057673 TA---TTTGC-CATACG-----ATTTC i equCab2.chr8 I 15 C 0 s pteVam1.scaffold_7037 55582 3 + 84018 ----------------------GAT-- i pteVam1.scaffold_7037 N 0 I 14498 s loxAfr3.scaffold_113 82481 18 - 3408981 TA---TTTGA-CAGATG-----ATTTC i loxAfr3.scaffold_113 I 3 C 0 s danRer6.chr4 44135966 23 + 71658100 -A---CTTACGCAAAAGAATAAACTTC i danRer6.chr4 C 0 C 0 e turTru1.scaffold_114229 61735 7613 + 106394 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=65791.000000 s hg19.chrUn_gl000223 3098 81 + 180455 TCACAAC----GAGAGT-AAAAAACACAATC---AAAACAATGTTCGAGATATAAAAATAGAATGCTAAT------------TACATAGCCCTTCACACAC s panTro2.chr12 138419 84 - 135371336 TCACAACAA-TGAGAGT-AAAAAACACAATC---AAAACAATGTTCGAGATATAAAAATAGAATGCTAAT------------TACATATCCCTTCACACAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 166001 85 - 136387465 TCACAACA---GTGAGT-AAAAAACACAATCAAGAAAACAATGTTCAAGATATAAAAATAGAATGCTAAT------------TACATATCCCTTCACACAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 139528 88 - 134511895 TCACAACAA-TGAGAGTAAAAAAATACAATCAAGAAAACAATGTTGAAGATATAAAAGTAGAATGCTAAT------------TACATGTCCCTTCACCCAC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_63055.1-7586 1445 53 + 7586 CAGCAAACA-TGAGAGC--AAAAACACAATCAGGAATCCAG---TTAATATGTAAAAGT------------------------------------------ i otoGar1.scaffold_63055.1-7586 C 0 N 0 s equCab2.chr8 64110373 85 - 94057673 CCAGACCAG-TGAGAGT-AAAAAGCACAACCAAGAAAACCAGGTTCAAGATATGAGT--AGAATGCTAAT------------TATAAATCCAAAACCTCTC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3141056 85 + 42029645 ACAGACCAA-TAAGAGT-AAAAAGCACAACCAAGAAAATCAGGTTCAAAATATGAAC--AGAATGCTAAT------------TATATATTCCTCACCCCTC i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 82499 80 - 3408981 CCAGGTGAA-TGAGAGTAAAAAAACTCAACCAAGAAAACCAGGTTCAAGATATAAAAGTAGAATAGCAAC------------TATGTATCACT-------- i loxAfr3.scaffold_113 C 0 I 805 s danRer6.chr4 44135989 93 + 71658100 CCACAGGAAGCCCAAAT-AAAACACAC-------AAAACAATGGATTAAGCACAAATGAAGAAAAATAATAAAAGCACAGAATACATATGAACTCGCACAC i danRer6.chr4 C 0 n 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=107848.000000 s hg19.chrUn_gl000223 3179 111 + 180455 TTCCCTTCCTCAA--TCACCTCACCTCTTCCCATCTCCTACTATACCTCCATACTCTTTTTAGTAGATGCCAAATGGATTTGAGGAAACTCAG------TACTTATTAAAAGCCTATAG s panTro2.chr12 138503 111 - 135371336 TTCCCTTCCTCAA--TCACCTCACCTCTTCCCACCTCCTACTATACCTCCatactctttttagtagatgccaaatggatttgaggaaactcag------tacttattaaaagcctatag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 166086 111 - 136387465 TTCCCTTCCTCAA--TCACCTCACCTCTTCCCATCTCCTACTATACCTCCATGCTCTTTTTAGTAGATGCCAAATGGATTTGAGGAAACTCAG------TACTTATTAAAAGCCTATAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 139616 109 - 134511895 TTCCCTTCCTCAA--TCACCTCACCTCTTCCCATCTCCTACTATACCTCCATACTC--TTTAATAGATGCCAAATGGATTTGAGGAAATTCAG------TGCTTATTAAAAGCCTATAG i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64110458 117 - 94057673 TTCCCTCCCTCAAAGTCATCTCACCTCCTCCCATCGCCTACTATGC--TGatactctttttggtagatgccaaatggatttgagaaaacttggcacttatccttatcaaaagcctacag i equCab2.chr8 C 0 I 25 s canFam2.chr26 3141141 114 + 42029645 TTCTTTCCCTCAAAGTCACCTCCCCTCCTTTTATCACCTG-TATGC--CCATACTC--TTTGGTAAACAACAGATGGATCTGATATAATTTAGCACTTATACTTATTAAAAGCCTAGAG i canFam2.chr26 C 0 I 1866 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I a score=16333.000000 s hg19.chrUn_gl000223 3290 81 + 180455 ATAGAAGGtttct-----------------------------------tttttc----ttttttttttttt---taagaaacggagtctcgctctgtcacccaggctggggtccagtggcacg s panTro2.chr12 138614 80 - 135371336 atagaaggtttct-----------------------------------tttttc-----tttttttttttt---taagaaacggagtctcgctctgtcacccaggctggggtccagtggcacg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 166197 83 - 136387465 ATAGAAGGTCTCt-----------------------------------tttctt-----ttttttttttttctgtaagaaacggagtctcgctctctcacccaggctggggtccagtggcatg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 139725 44 - 134511895 ATACAAGGTTTCT-----------------------------------TTT--------TATCATTTTTTT---TAAGAAACGGAGTCTC--------------------------------- i rheMac2.chr11 C 0 I 268 s equCab2.chr8 64110600 100 - 94057673 acaaaggattcctacgataaatcaccaactaatatactcaaagcaaaatttttagatgtttacactcttat---gaaaaaacaaaaatatcctctatcaccag-------------------- i equCab2.chr8 I 25 I 205 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e canFam2.chr26 3141255 1866 + 42029645 I a score=86508.000000 s hg19.chrUn_gl000223 3371 177 + 180455 atcttggctcactgcaaccgccgcctcccaggtttgagcaattctcctgcctcagcctcccgagtagctgggactacaggcacacgctgccacgcctggctaatggtttat---tttatttatttatttacttatgtatcttagtagagatggggtttcactgtgttgcccaggatggtc s rheMac2.chr11 140037 173 - 134511895 atcttggctcactgcagctgctgcctcccaggttcaaggaattctcctgcctcagcctcccgagtagctgggactacaggcacacactgctacgcctggctaatggt-------ttgattgattcattgatttttgtatcttagtagagacagggtttcaccgtgttgcccaggctggtc i rheMac2.chr11 I 268 C 0 s ponAbe2.chr12 166280 180 - 136387465 atcttggctcactgcaaccgccgcctcccaggttcgagcaattctcctgcctcagcctcctgagtagctgggactacaggcacacgctgacacgcctggctaatggtttatttatttattcatttatttatttatgtatcttagtagatatggggtttcaccgtgttccccaggctggtc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 138694 177 - 135371336 atcttggctcactgcaactgccgcctcccaggttcgagcaattctcctgcctcagcctcccgagtagctgggactacaggcacacgctgccacgcctggctaatggtttat---tttatttatttatttacttatgtatcttagtagagatggggtttcaccgtgttgcccaggctggtc i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64110700 205 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=34926.000000 s hg19.chrUn_gl000223 3548 82 + 180455 tcaaactcctgagctca---ggcaatctgcccacctc------------------------------ggcctcccaaagtgctaggattacagac-----atgagcca---ccAAG------------GTTTCAT s equCab2.chr8 64110905 135 - 94057673 tcagacaagtgaggtcacagggcaaactgctgcccccaagattggagaaacagataggaggatacagagagtcacaacttactagagcagaagcccctggaggaaccagtgccaggacaggaaaaccagaactgt i equCab2.chr8 I 205 C 0 s rheMac2.chr11 140210 82 - 134511895 ttgaactgctaagctca---ggcaatctgcccgcctc------------------------------agcctcccaaagggctaggattacagac-----atgagcca---ccAAG------------GTTTCGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 166460 82 - 136387465 tcaaagtcctgagctca---ggcagtctgcccacctc------------------------------ggcctcccaaaatgctaggattacaggc-----atgagcca---ccAAG------------GTTTCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 138871 82 - 135371336 tcaaactcctgagctca---ggcaatctgcccacctc------------------------------ggcctcccaaagtgctaggattacaggc-----atgagcca---ccaag------------gtttctt i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_535 136030 0 + 816002 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e canFam2.chr26 3141255 1866 + 42029645 I a score=44458.000000 s hg19.chrUn_gl000223 3630 70 + 180455 TCTTGATGTA---ATAAAGGATTCCT-TTGATAAACCAGCAACTAATATACTCCAAGGAAATTTTTTAGATGTA s panTro2.chr12 138953 70 - 135371336 tcttgatgta---ataaaggattcct-ttgataaaccagcaactaatatactccaaggaaactttttagatgta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 166542 70 - 136387465 TCTTGATGTA---ATAAAGGATTCCT-TTGATAAACCAGCAACTAATATACTCCAAGGAAATTTTTTAGATGTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 140292 70 - 134511895 TCTTGATGTA---ATAAAGGATTCAT-TTGATAAACCAGCAAGTAATATACTCAAAGGAAATTTTTTAGATGTA i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64111040 63 - 94057673 tactgacgcacagctagaggctcactactgataagtctgtgagttaaaaactccagggggacc----------- i equCab2.chr8 C 0 I 103 s xenTro2.scaffold_149 2320375 70 + 2342370 TTTTGATGCG---AGAGACGATTCTT-TTGATAAAAGAGATAATTCTTTGGTGCAAGACAATTCTTTTGACGCA i xenTro2.scaffold_149 n 0 n 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e canFam2.chr26 3141255 1866 + 42029645 I a score=33715.000000 s hg19.chrUn_gl000223 3700 64 + 180455 TTCACTCTTTTCTTGGGAAAACAGCCTAATACCTTCTATCACCAATGTTATTTAAGATCAATAC s rheMac2.chr11 140362 64 - 134511895 TTCACTCTTTTCTTGGGAAAACGGCCCAATATCTTCTGTCGCCAACGTTATTTAAGATCAATAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 166612 64 - 136387465 TTCACTCTTTTCTTGGGAAAACAGCCTAATATCTTCTATCGCCAATGTTATTTAAGATCAATAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 139023 64 - 135371336 ttcactcttttcttgggaaaacagcctaatatcttctatcaccaatgttatttaagatcaatac i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64111103 103 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=69985.000000 s hg19.chrUn_gl000223 3764 123 + 180455 AGGAAGAAGGAAATTATGGAAAATTATGACAGGGAgacttgcagtttccagtctgacttacaag--gatcttagaagtcactactctgtcctaaaaacaagtgaaaagttgaacaaactaaactc s panTro2.chr12 139087 123 - 135371336 aggaagAAGGAAATTATGGAAAATTATGACAGGGAgacctgcagtttacagtctgacttacaag--gaccttagaagtcactactctgtcctaaaaacaagtgaaaagttgaacaaactaaactc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 166676 123 - 136387465 AGGAAGAAGGAAATTATGGAAAATTATGACAGGGAgacttgcagtttccagtctgacttacaag--gatcttagaagtcactactctgtcctaacaacaagtaaaaagttgaacaaactaaactc i ponAbe2.chr12 C 0 I 6665 s rheMac2.chr11 140426 123 - 134511895 AGGAAGAAGGAAATTATAGAAAATGATGGCAGGGAgacttgcagtttccagtctgacttacaag--gatcttagaagtcactactctgtcctaacaacaagtgaaaagttgaacaaactaaactc i rheMac2.chr11 C 0 I 8093 s equCab2.chr8 64111206 111 - 94057673 aggagaaaaggagccatcctgaggtatgccagagcactctgt---------tctcattaacgaggtgctctcaggagaaactactttacc---agagcctgggagaag--agaagaactcaactc i equCab2.chr8 I 103 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e canFam2.chr26 3141255 1866 + 42029645 I a score=80940.000000 s hg19.chrUn_gl000223 3887 503 + 180455 cagccccttctagccatcctatcccacataaggtggaaaaaaaattaagaactaattaagttcttagtccagaagcacaggcttacca------------tgattttaagattacaaaatgcttctcttccctcaacaccttaccactacattacaaaaggcagttccttttactcagtacatcatgtccacccttcaatgtaaaattatgaggtatactaaatggc-------------aaaaaaaaaaaagtttgaacagactgaacaagcatcagaatctgagacagatacggtaggaatgttggaattatcagtccaggaa-cttaagaaactatgattaatatgctaacagttttactgggaaaaagtatacaagatgcaagatgagatggataatgtaaggagataaatgaaaattttaagaaagaatcaaaaggaaatactagaaataaaaattcctgtaatgggccaggtgca----------gtggctca-cgcctgtaat---cccagcactttgggaggtggaggctggcag s panTro2.chr12 139210 516 - 135371336 cagccccttctagccatcctatcccacataaggtggaaaaaaaattaagaactaattaagttcttagtccagaagcacaggcttacca------------taattttaagattacaaaatgcttctcttccctcaacaccttaccactacattacaaaaggcagttccttttactcagtacatcatgtccacccttcaacgtaaaattatgaggtatactaaatggcaaaaaaaaaaaaaaaaaaaaaaaaagtttgaacagactgaacaagcatcagaatctgagacagatatggtaggaatgttggaattatcagtccaggaa-cttaagaaactatgattaatatgctaacagttttactgggaaaaagtatacaagatgcaagatgagatggataatgtaaggagagaaatgaaaattttaagaaagaatcaaaaggaaatactagaaataaaaattcctgtaatgggccaggtgca----------gtggctca-cgcctgtaat---cccagcactttgggaggtggaggctggcag i panTro2.chr12 C 0 C 0 s equCab2.chr8 64111317 500 - 94057673 tggctcctgctagtcatcctgccccacctacgtgggaaaaactgagaagcactagtgaaggtcacagt------gcataggctcaccacaaactgagacttaatcagagagctacagatcgcttcccggccccccacaactcaccactacattgctaaaggc----ctgtttacccagtacctcacgtccacctttaaaca-aaaattacaaagcatatta-------------------aaagaaaaaaaagtctgaagagactgaacaagtatcagaaccagagttagatatagcaggaatgttgggattatcagatcaggaatttttaaaagctatgattaatatgctaagggctttaat-ggaaaatgttgataacatgcaagaataaatgaataatatgagcagagagaagaaaattctaagaaagagtcaaa--gaaatgct---aatgtaaact------atggacattgtttatgatgtcaatgtagttcatcagttgtaatgaatgtaccactctggtggg-ggatgttgataa i equCab2.chr8 C 0 I 125 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e canFam2.chr26 3141255 1866 + 42029645 I a score=20760.000000 s hg19.chrUn_gl000223 4390 231 + 180455 atcacaaggtcaggagatcaagaccatcctggctaacacagtgaaacccgtctctactaaaaatacaaaaaattagccgggcgtggtagcgactgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtaagctgagatcgcgccactgcactccagcctgggtgacagagcgagactccatctcaaaagaattc s panTro2.chr12 139726 231 - 135371336 atcacaaggtcaggagatcaagaccatcctggctaacacagtgaaacccgtctctactaaaaatacaaaaaattagccaggtgtggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggtggagcttgcagtaagctgagattgtgccactgcactccagcctgggtgacagagcgagactccatctcaaaagaattc i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64111817 125 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=78019.000000 s hg19.chrUn_gl000223 4621 439 + 180455 ctgtaatgaaaataaagaatgccttcaatgggctcataagtat--------------------tctgtgtag------atatctcaatagaaacgtccaaaactgaaaaacagataaaatattgagggaaaaaaaaggaacagattatccaagaactgtaggacaactacaaatgatgtaatatacgcataacagaaatact---aaaaaagaaggaagaacagaagcagtctttgaggaaataatgacggagaatttccccaaattaatgtcataaaccaaaccacagatggaggaaacacagagaacaccaagcaaggtaagtgccctctcgcccctcacaaaaacccctacaattaggtatattatattccaatttcagaaaatcaaatacaaagaaa--------aaagaagtcaaaggaaaaaa--accttacctataaaggaacaaggctgggaattacagtagtcctctcc s panTro2.chr12 139957 439 - 135371336 ctgtaatgaaaataaagaatgccttcaacgggctcataagtat--------------------tctgtgtag------atatctcaatagaaacgtccaaaactgaaaaacagataaaatattgaggggaaaaaaaggaacagattatccaagaactgtgggacaactacaaatgatgtaatatatgcataacagaaatact---aaaaaagaaggaagaacagaagcagtctttgaggaaataatgacggagaatttccccaaattaatgtcataaaccaaaccacagatgcaggaaacacagagaacaccaagcaaggtaagtgccctctcgcccctcacaaaaacccctacaattaggtatatcatattccaatttcagaaaatcaaatacaaagaaa--------aaagaagtcaaaggaaaaaa--accttacctataaaggaacaaggctgggaattacagtagtcctctcc i panTro2.chr12 C 0 C 0 s equCab2.chr8 64111942 459 - 94057673 ctgtaacagaagtgaagaatgtctttgatgggctcagtagtctggactcatctaaggaaagaatctctgaggcagacaatatgtcaatgaaaacttgcaaaactagaaagcaaaggaaaaaaggctaaaaaaaagcagaacaaa-tatccaaaaactgtgaggtaactacaaaaggtgtaacatacacataatgggaataccaggagaagagagaaagaaacagaagcagtatttgaagcaataatgactgagaatttccccaaattaatatcagacaccaaaccacagatccaggaagctcacagaataccaagtaagacaaatacc-------------aaaaaaaacctacaactagacatatcatattcaaatttcagaaaaccaaaggtaaagaaaaaatcctgaaagaagccagaggaaaaaaacactttacctatatgtgagcaa-----agaattcaatttgacttctcc i equCab2.chr8 I 125 I 3632 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e canFam2.chr26 3141255 1866 + 42029645 I a score=415569.000000 s hg19.chrUn_gl000223 5060 4536 + 180455 tctgtagtttttcaccacttcagttacctttgttcaatatttaaaagtattaaatagaaaattccagaaataattcatgtttaaactgtacaccattctgagtagtgtgacgtctcgcaccatcctgctccaccccaccccgaatgtgaattgtcctggcatatctatgctgcgaatgctacccacctgttagtcacttaggagctgtcagatcacctgatgcagtatcgtagtgcttgtgttcaactgacccttattttacttaatcatggccccaaagcacaagaatagtgatgctgacaattcagatatgccaaaaagaagctacaaagtgcttccttaatgggaaaatgtgaaatttcttctccactcaataaggaaaaactctctcatatgctgaggttgctaagattacagcagaatgagtcttctattcatatgaagaagaaaaaaagcaactcagctagtttcgctgttgcacctcaaactgctaaagttgcaaccacaagtgcataagtgcttagttaaggtgtaaaagggccaggcaaggtggctcatgcctgtcatcccagaattttgggaggccaagacaaggggattgcctaagtgcttgaggccagaagtttgcaaccagctgggcaagatatggagcacccatctctaaaaaaa-tttttttaaattagccaagtgtggtggtatgcacctgtggtcccagctactcaggaggttgaggtgaaaggatcgcttaagcccaggagctcgaggctgcagtgagctatgataacaccactgcactccagcctgggtgacaaagtaagaccctgccaaaaaaa---aaaaaaaaaaaaaaaaaaaaaaaaacggaaaaggcattaaatttttggatggaagacatgaacagaaacatactctaaccaatggcaatgaggttcaatactatctgcattttcaggcatccatcggaggttgtggaaaatatcccctgaagataggggaggattaccgtacatcagatcttctcagaaaccaagaaaaagaacaaggagagtggagtgaaatatttgaagtgctgagag-----aaaaaaaaaaaactctcaagcccacaattctgtagcctgtgagattatccttcaaaagtgaaggagaaattactctcttagaaaaataaaagtttttttaaggaatttgttgccagtacacctgccctgcaagaaatgttgaaagaagttcttcagagaggtggaaaatgatacaggtcagaaactcagacctacatgaagaaaggaatagcatttaagaagaaataagtaaaagtaaaataaatattttatttttttaaaagacagggtcttgctttattgcccaggttacagaagagtgttgggattatatttcactagagcctcaaattcctgggctcaagcacctcccacccaagcctcccaaagtactgagattccaagtgtgagccactgcacccagccttagttttcttattcttaattaacctcacagataacagcttgttcaaaataataacaatgtattggccgggcacagtggctcatgcctgtaatcccagcactttggaaggctaaggccggcagatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaattagccggacgtggtggtgtgcacctgtaatcccagttacccaggaaggaagctgaggcaggacaatgtctggaacccgggaggcagaggctgcagtgagccaagatcatgccatggcactccagcctgggtgacagagcaagactccatctcaaaaaataaaaTACAAggctgggcacgttggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtctaggagttggagaccagcctggccaatatggtgacaccccgtctctactaaatatacaaaaattagctgagcgtggtggctcgcgcctgtagtcccagctacttaggaggctgaggcagaagaatcgcttaaacccaggaggcggatgagccaagatagtgccaccgcactccagcctgggtgacagagcaagactctgtctcaaaaataaataaataaaataaaatacaaaaaattagccaggcatggtggcacacacctatagtcccagctactcaggaggctga-taggagaatcgcttggacccgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacagagcgagactctgtctcaaaaaaaTAATGATAATAACAATGTATTTtatgattatagcttacatataagtgaaatgaatgacaacagtgatactaaggactggaggaaaaaatgagaaatattttattataaggtacttgcactacacatgaagtggcacagtattatttgaaagtagggttggattatttataaatgtaggctgggcatagtggctcatgcctgtaatcctagcactttgggaggccaaggcaggtggattacttaaggtcaggagtttgagaccagcctggccaacatggcaaaaccctatctctactaaaaatgcagaccattagccaggcatggtagcacgcatgcctgtaatcccagctactatggaggttgaggcaggaggatctgttgaactcgggaggtggaggctgcagtgaggagagatcatgccactgcattccagcctgggtgacagaacaagactccatctc--aaaaaaaagaatgtatattgcaaactttaggacaaccatgagaaaaagaagtataatcaatatgctaagaaagaagagaaaatgaaatcatataaaatgctcaataaaaaacacaaaagggggctgggtgcgtaggctcacgcctgtaatcccagcactttgggaggtcgaggtgggcagatcacctgaggtcaggagttagagaccagcctggccaacatggtgaaatcccgtctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatctcagctacataggaggctgaggcagaattgcttgaacccaggagggggaggtcgcagtgagccaagattgcgccactgcactccagtctgggctacagagtaagacttcatctcaaaaacacacacacacacacacacacacacatggttagatgtggtgcctcatgcatataatcccagcacattgggagactgaggcaaaaggatctcttgagcccaagaatttgagacagcagtgagctatgattgtatcattgcactctatcctgggaaatggggagatcctgtctctaaagaaataagtaattttttttttttttttgagacagagtctcgctctgttgcccaggctggagtgcagtggtgtgatctcggctcactgcaacctccgcctcccgggttcacgccattcttgtgcctcagcctcccgagtagctgggactataggtgcccaccaccacacctggctaatattttgtacttttagtagagacgaggtttcatcatgttagccaggatggtctcaatctcctgaactcatgatctgcccaccttggcctcccatagtgccaggattacaggcgtgagccaccacacccagccAAAAATTAAataaattttaaaaatgaaggtcaacagtctaaatacactaacttaagacattgtcagagtgcatcacaaaacaagacccaactatatgttgtgtacaagaaacctagtttaaatatgaagatgcatatagatttagaataagtgagtacagaaaggtataccatactaacacttatcaaaagaaagagacgtagctaaattaatttcagacacagcagacttcagagcaaggttaaagaagagcattgcataatgataaaggagtcaatactccaagaaagaaatcataaaaatccttagtgtgcatgtgcctaacaacaaaccatcaaaatacattaggcagagcctgataaaacagcaaggagaaacagatgaatgcactattacacttggggacttcaacacccctctttcagaactggacagatccagcaggcagaaaatcgttaagaacacagctgaacttaacagcaccatcaatcaactgatatcagtagactacttcattcaacagattacacattcatctccaattcccaagacattcacgaagatagacgcaattcttagtcataacacacatcttaacaaatttcaaagaatagaaatcatataatatgtgctgtcagaccacaatggaatgaaaccagaaatcagtaacagaaagattaaaaggaaaatctcaaaacacatggatattgaacaacacacttctaagtaacacaaacaagaaatctgaaacttaaaaatatgttgaactaaatgaaaatgaaaatacaacttatttcagtgggataatcagtgggatgcagtgaaagcagtgcttaaaggaaaatttatagcattgaattaatatattagaaaaaaTGTAAAT s panTro2.chr12 140396 4536 - 135371336 tctgtagtttttcaccatttcagttacctttgttcaatatttaaaagtattaaatagaaaattccagaaataattcatgtttaaactgtacaccattctgagtagtgtgacgtctcgcaccatcctgctccaccccaccccgaatgtgaatcgtcctggcatatctatgctgcgaatgctacccacctgttagtcacttaggagctgtcagaccacctgatgcagtatcgtagtgcttgtgctcaaatgacccttattttacttaatcatggccccaaagcacaagagtagtgatgctgacaattcagatatgccaaacagaagctacaaagtgcttccttaatgggaaaatgtgaaatttcttctccactcaataaggaaaaactctctcatatgctgaggttgctaagattacagcagaatgagtcttctattcatatgaagaagaaaaaaagcaactcagctagtttcgctgttgcacctcaaactgctaaagttacaaccacaagtgcataagtgcttagttaaggtgtaaaagggccaggcaaggtggctcatgcctgtcatcccagaattttgggaggccaagacaaggagattgcctaagtgcttgaggccagaagtttgcaaccagctgggcaagatatggagcacccgtctctaaaaaaattttttttaaattaggcaagtgtggtggcatgcacctgtggtcccagctactcaggaggttgaggtgaaaggatcgcttaagcccaggagctcgaggctgcagtgagctatgataacaccactgcactccagcctgggtgacaaagtgagaccctgccaaaaaaaaacaaaaaacaaaaaacaaacaaaaaaccggaaaaggcattaaatttttggatggaagacatgaacagaaacatactctaaccaatggcaatgaggttcaatactatctgcattttccggcatccatcggaggttgcggaaaatatcccctgaagataggggaggattaccgtacatcagatcttctcagaaaccaagaaaaaaaacaaggagagtggagtgaaatatttgaagtgctgagagaaaaaaaaaaaaaaaaactctcgagcccacaattctgtagcctgtgcgattatccttcaaaagtgaaggagaaatcactctcttagaaaaataaacgtttttttaa-gaatttgttgccagtacacctgccctgcaagaaatgttgaaagaagttcttcagagaggtggaaaatgatacaggtcagaaactcagacctacatgaagaaaggaatcgcatttaagaagaaataagtaaaagtaaaataaatattttatttttttaaaagacagggtcttgctttattgcccaggttacagaagagtgttgggattatatttcactagagcctcaaattcctgggctcaagcacctcccacccaagcttcccaaagtactgagattccaagtgtgagccactgcacccagccttagttttcttattcttaattaacctcacagataacagcttgttcaaaataataacaatgtattggccgggcacggtggctcatgcctgtaatcccagcactttggaaggctaaggccggcagatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggtgtgcacctgtaatcccagttacccaggaaggaagctgaggcaggagaatgtctggaacccgggaggcagaggctgcagtgagccaagatcatgccatggcactccagcctgggtgacagagcaagactccatctcaaaaaataaaaTACAAggctgggcacgttggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtctaggagttggagaccagcctggccaatatggtgacaccgcgtctctactaaaaatacaaaaattagctgagcgtggtggctcgcacctgtagtcccagctacttaggaggctgaggcagaagaatcgcttaaacccaggaggcggatgagccaagatagtgccactgcactccagcctgggtgacagagcaagactccgtctcaaaaataaataaataaaataaaatacaaaaaattagccaggcatggtggcacacacctatagtcccagctactcaggaggctgagtaggagaatcgcttggacccgggaggcagaggttgcagtgagccaagattgtgccactgcactccagcctgggcaacagagcgagactctgtctcaaaaaaaTAATGATAATAACAATGTATTTtatgattatagcttacatataagtgaaatgaatgacaacagtgatactaaggactggaggaaaaaatgagaaatattttattataaggtacttgcactacacatgaagtggcacagtattatttgaaagtagggttggattatttataaatgtaggctgggcatggtggctcatgcctgtaatcctagcactttgggaggccaaggcaggtggattacttaaggtcaggagtttgagaccagcctggccaacatggcaaaaccctatctctactaaaaatgcagaccattagccaggcatggtagcacgcatgcctgtaatcccagctactatggaggttgaggcaggaggatctgttgaactcgggaggtggaggctgcagtgaggagagatcatgccactgcattccagcctgggtgacagaacaagactccatctcaaaaaaaaaaaaatgtatattgcaaactttaggacaaccatgagaaaaagaagtataatcaatatgct----aagaagagaaaatgaaatcatataaaatgctcaataaaaaacacaaaacggggctgggtgcgtaggctcacgcctgtaatcccagcactttgggaggtcgaggtgggcagatcacctgaggtcaggagttagagaccagcctggccaacatggtgaaatcccgtctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatctcagctacataggaggctgaggcagaattgcttgaacccaggagggggaggtcgcagggagccaagattgcgccactgcactccagtctgggctacagagtaagacttcatctc--aaacacacacacacacacacacacacacgaggttagatgtggtgcctcatgcgtataatcccagcacattgggagactgaggcaaaaggatctcttgagcccaagaatttgagacagcagtgagctatgattgtatcattgcactctgtcctgggaaatggggagaccctgtctctaaagaaaTAAGTAA-----tttttttttttgagacagagtctcgctctgttgcccaggctggagtgcagtggtgtgatctcggctcactgcaagctccgcctcccgggttcacgccattctcatgcctcagcctcccgagtagctgggactataggtgcccaccaccacgcctggctaatattttgtacttttagtagagacgaggtttcatcatgttagccaggatggtctcaatctcctgaactcatgatctgcccaccttggcctcccatagtgccaggattacaggcgtgagccaccgcacctagccaaaaattaaataaattttaaaaatgaaggtcaacagtctaaatacgctaacttaagacattgtcagagtgcatcacaaaacaagacccaactatatgttgtgtacaagaaacctagtttaaatatgaagatgcatatagatttagaataagtgagtacagaaaggtataccatactaacacttatcaaaagaaagagaagtagctaaattaatttcagacacagcagacttcagagcaaggttaaagaaaagcattgcataatgataaaggagtcaatactccaagaaagaaatcataaaaatccttagtgtgcatgtgcctaacaacaaaccatcaaaatacattaggcagagcctgataaaacagcaaggagaaacagatgaatgcactattacacttggggacttcaacacccctctttcagaactggacagatccagcaggcagaaaatcattaagaacatagctgaacttaacagcaccatcaatcaactgatatcagtagactacttcattcaacagattacacattcatctccaattcccaagacattcacgaagatagacactattcttagtcataacacacatcttaacaaatttcaaagaatagaaatcatataatatgtgctgtcagaccacaatggaatgaaaccagaaatcagtaacagaaagattaaaaggaaaatctcaaaacacatggatattgaacaacacacttctaagtaacacgaacaagaaatctgaaatttaaaaatatgttgaactaaatgaaaatgaaaatacaacttatttcagtgggataatcagtgggatgcagtgaaagcagtgcttaaaggaaaatttatagcattgaattaatatattagaaaaaatgtaaat i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 9596 895 + 180455 tgtacggaaaagagagggagatcagactgtcactgtacctatgtagaaagggaagacataagagactccattttgaaaaagacctgtactttaaacaattgctttgctgagatgttgttaatttgtagctttccccagccactttgacccaacctggagctcacaaaaacgtgttgtataaaatcaatgtttaagggatctagggctgtgcaggacgtgccttgttaacaaaatgtttacaagcagtatacttggtaaaagtcatcgccattctctagtctcaataaaccaggggcacatgcactgcagaaagccacagggacctctgcccttggaagcggggtattgtccaaggtttctccccatgtgatagtctgaaatatggcctcgtgggatgagaaagacctgaccatcccccagcccgacacccataaagggtctgtgctgaggtggactggtaaaagaggaaagcctcttgcagttgagatagaggaaggccactgtctcctgtctgcccctgggaactgaatgtctcggtataaaacccgattgtacatttgttcaattctgagatagtagcaaaaccgccctatggtgggaggcgagatatgtttgcagtaatgctgccttgttattctttactccgctgagatgtttgggtggagagaaacataaacctggattacgtgcacatctaggcatagtaccttcccttaaacctaattatgatatagattcttttgctcacatgttttttgctgaccttctccttattatcaccctgctctcctactacattcctttttgctgaaataatgaaaataataatcaataaaaactgagggaactcagaggccggtgctggtgcaggtccttggtatgctgatgccggtcc e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 144932 0 - 135371336 C e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=122307.000000 s hg19.chrUn_gl000223 10491 1555 + 180455 cctgggcccactgttgtttctctatactttgtctctgtgtcttctttcttttctcagtctctcatcccacccgactagaaatacccacaggtgtggaggggcaggccaccccttcatctggcgcccgatgtgggggcctttctctagggtgaaggtatgctaagaacgtgagcattgaggacagccgacgagagattcccaagtacatccacagtcagccttgcggtaagcttgtgcgctcggaggaatccagggtaacaatggggcaaactgcaagtaaatatgcctcttatctcagcttcattaaaattctcttaagaagagggggagttaaagcttctacagaaaatctaattacgctatttcaaacaatagaacaattctgcccatggtttccagaacagggaactttagatttaaaagattgggaaaaaattggcaaagaattaaaacaagcaactagggaaggtaaaatcatcccacgtgcagtatggaatgattgggctattattaaagcaactttagaaccatttcaaacagaagaagttagagtttcagtttctgatgcccctgaaagctgtgtaatagattgtgaaga---ggcagaaacagagttcaagaaaggaacagaaagttcacatggtaaaaatgtagcagagccagtaatggctcggtcaacgcaaaatgttgactacaatcaattacaggaggtaatatatcctgaaacattaaaattaaaaggaaaaa--gtccagaaccatcagggctgttggggttaaaagcacgatggccacctcctcctcAGCCGAGTGAGTGCTGGGGGAGGGAGCCTGAAACTACGCTTGCTGCGACTTGGCTCGTGGCACTCATTATTGCCCAACCTGCAGTTCACTACGGTGAAGGAGCAATTCAGACTTGCCCTGCAGCTTcctgtatgggtcaaagagtggccgctctctaaggaaaagttgggggtgttacataaaatagtt--aaaaaactattttaaataggatgtgttccacccactttctctctttagaattctcctgtgtttgtaattcagaaaaaatcaggcagatggtgcatgctaactgatttgagagccattaatgcagcaattcaacccatggggcctctccaacctgggctgccctctccggccatgacccccaaagattggcttttaattataattgattcaaaggattgcttttttaccattcctgtggcaaaacaggattttgaaaaatttgcttttactataccagccgtaaataataaagaaccagccaccagatttcagtggaaagtgttgcctcagggaatgcttaatagtccaactatttgtcagacttttgtagctcaagttcttcaaccaatgagagacaagttttcagactgttgtattattcattatgttgataatattttgtgtgctccagaaaccagagacaaattaattgactgttacacatttctgcagacagaggttgcaaacgcaggcctgacaatatcatctgataaaattcagacctccactccttttcattatttgggaa s papHam1.scaffold8129 95247 1556 - 96827 cctgggcccactgttgtttctctatacttcatctctgtgtcttatttcttttctcagtctctcgtcacacctaacaagatat-cccacaggtgtcaaggggcaggacaccccttcatctggcgcccaacgtgggg-cctttctctagggtgaaggtacactaagaacgtgagcactgaggacagccgacaagagattcccgagtatgtccacagtcagccttacggtaagcttgtgtgctcggaggaatccagggtaacagtggggcaaactgaaagtaaatattcttcttatctcagcttcattaaaattcttttaagaagaaggggagtaaaagcctctacagaaaatctaattacgctatttcaaacaatagaacaattctgcccttggtttccagaacagggaactttagatttaaaagattgagaaaaaattggcaaggaattaaaacaagcaagtagggaagataaaatcatcccacttacagtatgaaatgattgggccattattaaagcaactttagaaccatttcaaatagaaga---tagcgtttcagtttctgatgcccctgaaagctgtgtaatagattgtgaagaagaggcagggagggagttcaaaaaaggtaaggaaaattcacattgtaaaaatgtagcacagctagtaatggctcggtcaacgcaatatgttgactacaatcaattacaggaggtaatatatcctgaaacattaaaattaaaaggaaaaaaagtccagaaacatcggggccattgggtctaaaaccattatggccacctcctcctcAGCCGAGTGAGTGCTGGAGGAGGGAGCCTGAAACTAGGCTTGCTGCGACTTGGCTCGTGGCACTCATTATTTTCCAACCTACAGTTCACTGTGGTGAAGGAGCAATTCAGACTCGCCCTGCAGTGTACTgtatgggtcaaacagtggctgctccctaa-gaaaagttgggggcgctacataaaatagttaaaaaaaactattttaaaaaggacatgtttcatccactttctctctttagaattctcctgtgtttgtaatttggaaaaaatcaggcagatggcgcatgctgactgacttgggagtcattaatgtggtaattcaacctatggtgcctctctaaccccggctgctctctccagccatgatccccaaagattggcctttaattataactgatttaaaggattgattttttaccattcctctggcggagcaggattgtgaaaaatttgcttttactaaaccagccataaataataaagaatgagccaccaggtttcagtggaaagtgttgtctcaggcaatgcttaatattccagctatttgtcagacttttgtagctcaggttcttcaaccagttagagacaagttttcagactgttatatcattcattgtgttgatgatattttgtgtgctgcaaaaacaagagacaaattaattgactgttacacatttctgcagatagaggttgcaaacgcaggcctgacaatagcatgtgataagattcagacatccactccttttcagtatttgggaa i papHam1.scaffold8129 N 0 N 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 144932 0 - 135371336 C e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 12046 2487 + 180455 agaccaacagagagaaaagtaaaactggggagaaaaagagaaagaaaaagagacTAAGTGTGAAGGAGAGAGGACACAGGGGATAACagacagagagactggaaaagacagagatcagagaaagacacagaaagtgagactggcgagagagatcgtgtaaaaggaagagacagagattagagagagacacagaaagtgaaactggagataaagTGTGTgagagagagagagaggaagagagagaCTGTaagagaagggagacaaaaagtaaggaatataacactccccagatacaacttaatctagcactctatactttgaattttctaaacatatatagaaatcagaccactacttctgcagaacaacattttactggtaaaaagaacagcccacatgagggaaaactaatttggtggaaagacaacaaaaataaaacatgggaaatagggaaggtgataacatgggggagagattttgcttgtgtttaaccagaaaataaatcagcttccagtttggatacttacAACTTacaaaagaagtttccatctaccaagaaagcggagccgtcgacataggcccagctaaagaagctgacacagttagctgaaaaaaagcctggaaaacacaagagtaacacaaactccagagaatatgctgcttgcagctttaatgattgtatcaacggtggtaagtctccctatgtctgcaggagccgctacaactaactatacttactgggcctatgtgcctttcccacccttaattcagacaattacttggatagataatcctattgaagtatacgttaataacagtgcatgggtaccaggccccatggatgaccgtggccctgcccaacctgaagaaggaatgatgataaacatttccattgggtatcattatcctcctatttgcctggaaaaagcaccaggatgcttaatgcctacaatccaaaattggttggtataagtacctactgtcaatgccaccagtaaatttacttatcacatggtaagtggaatgtcaatcgggtcacaaatgaataatttacaggattcttcctatcaaagatcattaaaatttaggcctaagggaaaaccatgccccaaggaaattccaaaagaatcaaaagacccagaagtcttagtttgggaacaatgtgcggctgatactgcagtggtactacaaaacaataaatttggaactattatagactgggcccctcgaggccaattatattatgattgtacgggccaggcccactcatgttcacaggctccatctctctggcccactaatccggcctatgatggtgatttaactaaaaggctagaccaggtttacagaaggctagaatcaccctatccatggaaatggggtgaaaagggaatttcatcaccccgaccaaagttagttagtcctgttgttggtcctgaacacccaaaattatggaagctcactgtggtctcctaccacattaaaatttggtatggaaatcaagttatggaaacaagaaatcacaagccatattacactattaacctaaattccaatctgacaattcctttgcaaagttgtgtaaaacccccttatatgctagttgtaggaaacatagttattaaaccagatgtccaaactataacctgtgaaaattgtagattgtttacttgcattgattcaacttttgattggcagcatcgtattctgttagtgagggcaagaaagggcgtgtggatccctgtgtccatggaccgaccgtgggaggcttctccatccgtacatatcttaacagaagtattaaaaggagttctaactaaatctaaaagattcatttttactttgattgcagtgattatgggtcttattgcagtcacagctactgctgtggctgctggaattgctttacactgctctgttcaaactacaaaatatgtgaataattggcaaaagaattcctcaagactgtggaattctcagactcaaatagatcaaaaattagcaaatcaaattaatgatcttagacaaactgtcatttggatgggagataggctcatgagcctggaatatctttttcagttagtgtgactggactacgtcagatttttgtattacacctcgagcctataatgaatctgaacatcactgggacatggttaaacgccgtctacaaggaagagaagacaatcttactttagatatttccaaattgaaagaacattatttttgaaacatcaaaacccagttaaatctggtgccagaaactgagacaatggtaaaagctgttgatagcctcacaaatcttaaccctgtcacttgggttaaaaccactggaaattccactattacaaattttgtattaatccttgtatgtctgtcctttctattattagtctacaggtgtatacaacagctccggagagacagcgaccagcgagaacgggtcatgatgacgatggcggttttgtcaaaaagaaaagggggaaa e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 144932 0 - 135371336 C e ponAbe2.chr12 166799 6665 - 136387465 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=308951.000000 s hg19.chrUn_gl000223 14533 1183 + 180455 tgtagggaaaagaaagagagatcagactgtcactgtgcctatgtagaaagggaagacataagagactccattttgaaaaagacctgtactttaaacaattgctttgctgagatgttgttaatttgtagcttt-ccccagccactttgacccaacctggagctcacaaaaacatgtgttgtataaaatcaatgtttaagggatctagggctgtgcaggacgtgccttgttaacaaaatgtttacaagcagtatacttggtaaaagtcatcgccattctctagtctcaataaaccaggg-cacagtgcactgcagaaagccgcagagacctctgcccttgaaagcagggtattgtccaaggtttctcccaatgtgagagtctgaaatatggcctcgtgggatgagaaagacctgaccgtcccccagcccgacacctgtaaaaggtctgtgctgagatggatgagtaaaagaggaaagcctcttgcagttgagatagaggaaggccactgtctcctgtctgcccctgggaactgaatgtctcggtataaaacccgattgtacatttgttcaattctgagatagtagcaaaaccgccctatggtgggaggcgagatatgtttgcagtaatgctgccttgttattctttactccgctgagatgtttgggtggagagaaacataaatctggattacatgcacatctaggcatagtaccttcccttaaacctaattatgatatagattcttttgctcacatgttttttgctgaccttctccttattatcaccctgctctcctactacattcctttttgctgaaataatgaaaataat----aataaaaactgagggaactcagaggccggtgctggtgcaggtccttggtatgctgagtgctggtcccctgggcccactgttgtttctctatactttgtctctgtgtcttctttcttttctcagtctcttgtcccacccgactagaaatacccacaggtgtggaggggcaggccaccccttcataaatcaatcatctacgttctatgtcaggaaattttaaaaagagcaaattaaattcaaaggaagaagaaaagaaataaaaatcagagcaaaggacccaggtgcagtggctcacacctgtaatcccagcactttgggaggccaaggtgggtagatcatttgaggacaggagttc s ponAbe2.chr12 173464 1174 - 136387465 tgtagggaaaagagagagagatcagactgtcactgtgtctacgtagaaagggaagacataagagactccattttgaaaaagacctgtactttaaacaattgcttcactgagatgttgttaatttgtagctttgccccagccactctgacccaacctggagctcacaaaaacatgtgttgtataaaatcaaggtttaagggatctagggctgtgcaggacatgccttgttaacaaaatgtttacaagcagtatacttggtaaaagtcatcgccattctctagtctcaataaaccaggagcacaatgcactgcagaaagccgcagggacctctgcccttgaaagttgggtattgtccaaggtttctccccatgtgatagtctgaaatatggcctcgtggaatgagaaagacctgactgtcccccagcccgacacccataaagggtctgtgctgaggtggattagtaaaaggggaaagcctcttgcagttgggatagaggaaggccactgtctcctgcctgcccctgggaactgaatgtcttggtataaaacccgattgcacatttgttcaattctgagatagtagaaaaaccgccctatggtgggaggcgagatatgtttgcagtaatgctgccttgttattctttactccactgagatgtttgggtggagagaaacataaatctggcttatgtgctcatctaggcatagtaccttcccttaaacctaattatgatatagattcttttgctcacatgttttttgctgac---ctccttattatcaccctgctctcctactacattcctttttgctgaaataatgaaaataataatcaataaaaactgagggaactcagaggccggtgccggtgcaggtccttggtatgctgtgtgccggtcccctgggcccactgttgtttctctatactt------tgtgtcttatttcttttctcagtctctcgtcccacccgactagaaatacccacaggtgtggaggggcaggccaccccttcataaatcaatcatctaccttctatgttaggaaattttaaaaagagcaaattaaattcaaaggaag-----aagaaataaaaattagagcaaagggcgcaggtgcagcggctcacacctgtaatcccagcactttggga-gccaaggtgggaagatcatttgaggacaggagttc i ponAbe2.chr12 I 6665 C 0 s panTro2.chr12 144932 1183 - 135371336 tgtagggaaaagaaagagagatcagactgtcactgtgcctatgtagaaagggaagacataagagactccattttgaaaaagacctgtactttaaacaattgctttgctgagatgttgttaatttgtagcttt-ccccagccactttgacccaacctggagctcacaaaaacgtgtgttatataaaatcaatgtttaagggatctagggctgtgcaggacgtgccttgttaacaaaatgtttacaagcagtatacttggtaaaagtcatcgccattctctagtctcaataaaccaggggcacaatgcactgcagaaagccgcagagacctctgcccttgaaagcggggtactgtccaaggtttctccccatgtgatagtctgaaatatggcctcgtgggatgagaaagacctgaccgtcccctagcccgacacccgtaaagggtctgtgctgagatggatgagtaaaagaagaaagcctcttgcagttgagatagaggaaggccactgtctctcgtttgcccc-gggaactgaatgtctcggtataaaacccgattgtacatttgtccaattctgagatggtagcaaaaccgccctatggtgggaggcgagatatgtttgcagtaatgctgccttgttattctttactccgctgagatgtttgagtggagagaaacataaatctggattacgtgcacatctaggcatagtaccttcccttaaacctaattatgatatagattcttttgctcacatgttttttgctgaccttctccttattatcaacctgctctcctactacattcctttttgctgaaataatgaaaataat----aataaaaactgagggaactcagaggccggtgctggtgcaggtccttggtatgctgagtgctggtcccctgggcccactgttgtttctctatactttgtctctgtgtcttctttcttttctcagtctctcatcccacccgactagaaatacccacaggtgtggaggggcaggccaccccttcataaatcagtcatctaccttctatgttaggaaattttaaaaagagcaaattaaattcaaaggaagaagaaaagaaataaaaatcagagcaaaggacccaggtgcagtggctcacacctgtaatcccagcactttgggaggccaaggtgggtagatcatttgaggacaggagttc i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 140549 8093 - 134511895 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=718186.000000 s hg19.chrUn_gl000223 15716 1423 + 180455 aagaccagactggacaacatagcaagactctgtctttacaaataaaaaataaaatatttagtcaggagtgttggcatgtgtcggtacttatagctacttggaagctaaggcaggaggaaggcttgagcccaggaaatttacgttgcagtgagctacgattgtggcactgcattccagcctaggtgacagagcaagatcctgtctc-aaaaaaaTAggctgggtgtggtggctcacatctataatcccggcactttgggaggctgaagtgcgtggattactggaggtcaggagttcaagaccagcctggccaacatgatgagaccccatctctactaaaaatacaaaattagctgggcgtggtggcgtgcacctgtaatcccagctactcaggaggctgaggcagaagaatcgcttgaacccgggaggcagaggctgcagtaagtgagatagtgccattgcactccagcctgggcaaaaggatagaaactctgtctcaaaaaaaaaaaaaa-gcacaaatattgatgaaatttacaataggctattaatagagaaaagcaaccaaatcaacctagttctctgaaaagataattaaaatcaataagcctctagccaggctaattaagaaaaaaagatgtcatacattattaatatcagcaatgaaagggggcctcagtacaaatttcatgggcataaaaaggataataaaggaataccatgaataactc--tgcccacaaatttgataacatagctaaaatggtccaattccttgaaagacatacattgctaaagctcacacaataaggaggaaactatctgaataggcctgtatctagcaaagaaatcaaatgaggctgcgtgtggtggctcacacttacaatcctagcactttgggaggccaaggtgggcag-attgcttgaacctaggaattcaagactagcctgggcaacatggtgaaacctcgtctctgc-aaaaaatacaaaaatgagctgggcatggtggagcgcacctgtagtcccagctacttgggaggctgagacgggaggatcacctgggccgggggaagttgaggctgcagtgagccatgattgcaccactgcactccagccttgac-aaca--gagtgagaccctgcctcgaaaaaaaaaaaa-a-------tcaaatgaataattaataactttcaaaaatgaaagcatcaggattcactggtaaattctaccaaacatttaaggaagaaattataccaatcccctcaatctcttccagacgacagaaacggagggaaaacttccccactcattctatgaggccagcactgacctagtatcaaaaccaaaggaattataagaaaa-gaaaatgacaggccagtatctctcatgaacataaatgtaaaaattctcaacaaaatactagtaaatttaatccaacaatgtat s panTro2.chr12 146115 1423 - 135371336 aagaccagactggacaacatagcaagactctgtctttacaaataaaaaataaaatatttagtgaggagtgttggcatgtgtctgtacttatagctacttggaagctaaggcaggaggaaggcttgagcccaggaaatttaggttacagtgagctacgattgtggcactgcattccagcctaggtgacagagcaagatcctgtctc-aaaaaaaTAggctgggtgtggtggctcacatctataatcccagcactttgggaggctgaagtgggtggattactggaggtcaggagttcaagaccagcctggccaacatgatgagaccccatctctactaaaaatacaaaattagctgggcgtggtggcgtgcacctgtaatcccagctacttgagaggctgaggcagaagaatcgcttgaacccgggaggcagaggctgcagtaagtgagatagtgccattgcactccagcctgggcaaaaggatagaaactctgtctcaaaaaaaaaaaaaaagcacaaatattgatgaaatttaaaataggatattaatagagaaaagcaaccaaatcaacctagttctctgaaaagataattaaaatcaataagcctctagccaggctaattaagaaaaaaagatgtcatacattactaatatcagcaatgaaagggggcctcagtacaaatttcatgggcataaaaaggataataaaggaataccatgaacaactc--tgcccacaaatttgataacatagctaaaatggtccaattccttgaaagacatacattgctaaagctcacacaataaggaggaaactatctgaataggcctgtatctagcaaagaaatcaaatgaggctgcgtgcggtggctcacacttacaatcctagcactttgggaggccaaggtgggcag-attgcttgaacctaggaattcaagactagcctgggcaacatggtgaaaccccgtctctgc-aaaaaatacaaaaatgagctgggcatggtggagtgcacctgtagtcccagctacttgggaggctgagacgggaggatcacctgggccgggggaagttgaggctgcagtgagccatgattgcaccactgcactccagccttgac-aaca--gagtgagaccctgcctcgaaaaaaaaaaaa---------TCAaatgaataattaataactttcaaaaatgaaagcatcaggattcactggtaaattctaccaaacatttaaggaagaaattataccaatcccctcaatctcttccagacgacagaagcggagggaaaacttccccactcattctatgaggccagcactgacctagtatcaaaaccaaaggaattataagaaaa-gaaaatgacaggccagtatctctcatgaacataaatgtaaaaattctcaacaaaatactagtaaatttaatccaacaatgtat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 174638 1426 - 136387465 aagaccagactggacaacatagcaagactctgtctttacaaataaaaaataaaatatttaatcaggagtgttagcatgtgtctgtactcatagctacttggaagctaaggcaggaggaaggcttgagcccaggaaatttaggttacagtgagctacgattgtggcactgcattccagcctaggtgacagagcaagatcctgtctcaaaaaaaaTAggctgggtgtggtggctcacatctataatcccagcactttgggaggctgaagtgggtggattactggaggtcaggagttcaagaccagcctggccaacatgatgagaccccgtctctactaaaaatacaaaattagctgggcatggtggcgtgcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggctgcagtaagtgagatagtgccattgcactccagcctgggcaaaaggatagaaactctgtctcaaaaaaaaaaaaaa-gcacaaatattgatgaaattaaaaataggatattaatagagaaaagcaaccaaatcaacctagttctctgaaaagataattaaaatcaataagcctctagccaggctaattaagaaaaaaagatgtcatacattattaatatcagcaatgaaagggggcctcagtataaatttcatgggcataaaaaggataataaaggaacaccatgaacaactc--tgcccacaaatttgataacatagataaaatggaccaattccttgaaagacatacattgccaaagctcacacaataaggaggaaactatctgaataggcctttatctagcaaagaaatcaaatgaggctgcgtgcggtggctcacacttactatcccagcactatgggaggccaaggtgggcag-attgcttgaacctagaaattcaagactagcctgggcaacatggtaaaaccccgtctctgcaaaaaaatacaaaaatgagctgggcatggtggagtacacctgtagtcccagctacttgggaggctgagatgggaggatcacctgggccaggggaagttgagtctgcagtgagccatgattgcaccactgcactccagccttgac-aaca--gagtgagaccctgcctcaaaaaaaaaaaaaaa-------tcaaatgaataattaataactttcaaaaatgaaagcatcaggattcactggtaaattctacccaacatttaaggaagaaattacaccaaccccctcaatctcttccagacgacagaagtggagggaaaacttccccactcattctatgaggccagcattgacttagtatcaaaaccaaaggaattataagaaaa-gaaaatgacaggccagtatctctcatgaacataaatgtaaaaattctcaacaaaatactagtaaatttaatccaacaatgtat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 148642 1406 - 134511895 aagaccagactggataacatagcaagactctgtctttacaaataaaaaataaaatatttagtcaggagtgttggcatgtgtctgtactcatagctatttggaatctaagggaggaggaaggcttgagcccaggaaatttaggttacagtgagctatgattgtggcactgctttccagcttaggtgacagagcaacatcctgactcaaaaaaaaTAggctgggcgcagtggctcacgtctataatcccaacactttgggaggctgaggtgggtggattacgggaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaattagctgggcgtggtggcgtgcaactggaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagtgagatcgtgccactgaactccagcctgggcaaaa----agaaactctgtctcaaaaaaaaaaaaaa-gcacaaatattgatgaaattaaaaatagggtattaatagagaaaagcaaccacatcaagctagttctctgaaaagataattaaaatc---aagcctctagccaggctaattaagaaaaaaagatgtcacacattattaataccagcaatgaaagggggcctcagtataaatttcatggatataaaaaggataataaaggaataccatgaataactctatgcccacaaatttgataacaaagataaaatggaccaattccttgaaagacatacattgccaaagctcacacaataaggagaaaactatctgaa------------tagcaaagaaatcaaacaaggctgcgtgcggtggctcacacttataaccccagcaatttgggaggccaaggtgggcagaattgcttgaacctaggaattcaagactagcctgggcaacatggtgaaacgccgtttctgc-aaaaaatgc-acaatgagctgggcatggtggagtgtgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctgggcccagggaagttgaggctgcagtgagccatgattgcaccactgcactacagcctggacaaacagtgtgtgagaccctgtctcaaaaaaaaaaaaaaaaaaaaattcaaatgaataattaataactttcaaaaacaaaagcatcaaggttcactggtaagttctaccaaacatttaaggaagaaattataccaaacc------------ccagatgacagaagcagagggaataa-tcctcactcattctataaggcaagcactgccctaatatcaaaaccaaaggaattataagaaaataaaaatgacagaccagtatctctcatgaacataaatgtaaaaactctcaacaaaatattagtcaatttaatccaacaatgtat i rheMac2.chr11 I 8093 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=115048.000000 s hg19.chrUn_gl000223 17139 163 + 180455 aaagggaattatactccatgcccaagtggaatttatcccaggtatacagggctggttcaacatttgaaaatcaattaatgtaaaatataatccatcacatcaacaggctaaagaagtaaaatcacat---aatatcaatagaagcaat-aaaagcattagcaaaatc s otoGar1.scaffold_117725.1-32403 23062 156 + 32403 aaaaaaaattatatccca----ctagtggaatttattacaagaatgtagtgttgattcagcatttgaaaattatttaatgtaa-------tctatcacatcaataagctaaagtagtaaaataatgtaaaaatatcaacagatgcaataaaaagcagttgcaaaatc i otoGar1.scaffold_117725.1-32403 N 0 C 0 s panTro2.chr12 147538 163 - 135371336 aaagggaattatactccatgcccaagtggaatttatcccaggtatacagggctggttcaacatttgaaaatcaattattgtaaaatataatccatcacatcaacaggctaaagaagtaaaatcacat---aatatcaatagaagcaat-aaaagcattagcaaaatc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 176064 159 - 136387465 aaagggaattatactccatgcccaagtggaatttatcccaggtatacagggctggttcaacatttgaaaatcaattaatgtaaaatata----atcacatcaacaggctaaagaagtaaaatcacat---aatatcaatagaagcaat-aaaagcattagcaaaatc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 150048 163 - 134511895 aaagggaattatactccatgaccaagtggaatttatcccaggtatacagggctggttcaacatttgaaaatcaattaatgtaaattgtaatccattacatcaacaagctaaagaagtaaaatcacat---aatatcaacagaagcaat-aaaagcatcagcaaaatc i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3141255 1866 + 42029645 I a score=28576.000000 s hg19.chrUn_gl000223 17302 47 + 180455 caacaaccaatcgtgataaaaaAATAAAATCACATGATAATATCAAt s rheMac2.chr11 150211 47 - 134511895 caacaaccaaccgtgataaaaaAATAAAATCACATGATAATATCAAt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 176223 47 - 136387465 caacaaccaatcgtgataaaaaAATAAAATCACATGATAATATCAAt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 147701 47 - 135371336 caacaaccaatcgtgataaaaaAATAAAATCACATGATAATATCAAC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_117725.1-32403 23218 40 + 32403 caacatcc-attgagataa------aaaatctcaggaaaacagtaat i otoGar1.scaffold_117725.1-32403 C 0 I 3540 s canFam2.chr26 3143121 42 + 42029645 caacatcaaatgctgagaaggatgcagagcaatagga-acta----t i canFam2.chr26 I 1866 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29901791 968 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I a score=71148.000000 s hg19.chrUn_gl000223 17349 70 + 180455 cattcattgctgacgggaatgcaaaatggtacaatcactttggaagacattttggcagttacttacaaaa s panTro2.chr12 147748 70 - 135371336 cattcactgctgatgggaatgcaaaatggtacaatcactttggaagacattttggcagttacttacaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 176270 70 - 136387465 cattcattgctgatgggaatgcaaaacggtacaatcactttggaagacattttggcagttacttacaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 150258 70 - 134511895 cattcattgctggtgggaacacaaaatggtacaatcactttggaagatattttggcagtttcttacaaaa i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29902759 70 - 76506943 tattcattgctggtgggaatgaaaaatggtacagccactttgaaaaacagtttgtcagtttcctataaaa i bosTau4.chr17 I 968 C 0 s canFam2.chr26 3143163 59 + 42029645 cattcattgcttgtgggaatgtaaaatggtagaaccaatttggaaaatagtttggcagt----------- i canFam2.chr26 C 0 I 273 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_117725.1-32403 23258 3540 + 32403 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=360357.000000 s hg19.chrUn_gl000223 17419 419 + 180455 ctaaatatattcttaccatatgacccagcagtcacactccttggtatttacccaaatgaaatgaaaacttatgcccatacaaaaacctgcacacagatgt--------gctttattcaaaattgtcaaaactttggaagcaaccacaatgtccttaagtaggtgaacatataagtaaactgcagtacatgcagacaatggaatattattcagtgctaaaaagaaa-gagctatcaagccatgaaaagacat----gtaactaaaatgcatattactatgtattagt-atgtgaaagaagccattttgaaaaggttaattcc-----------aactctctgacattctggaacaggcaaaactatggagacagtaacaaaaatcagcggatgccaagggttgg----gaatgggtgat---taggcagaacacagagaatttttagtgcag s panTro2.chr12 147818 418 - 135371336 ctaaatatattcttaccatatgacccagcagtcacactccttggtatttacccaaatgaaatgaaaacttatgcccatacaaaaacctgcacacagatgt--------gctttattcaaaattgtcaaaattttggaagcaatcacaatgtccttaagtaggtgaacatataagtaaactgcagtacatgcagacaatggaatattattcagtgctaaaaagaaa-gagctatcaagccatgaaaagacat----gtaactaaaatgcatattactatgtattatttatgtgaaagaagccattttgaaaaggttaattcc-----------aactctctgacattctagaacaggcaaaactatggagacagtaacaaaaatcagtggatgccaagggttag----gaatgagtgat---taggcagaacacaga--atttttagtgcag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 176340 419 - 136387465 ctaaatatattcttaccatatgacctagcagtcacactccttggtatttacccaaatgaaatgaaaacttatgcccatacaaaaacctgcacacagatgt--------gctttattcaaaattgtcaaaactttggaagcaaccacaatgtccttaagtaggtgaacagataagtaaactgcagtacatgcagacaatggaatattattcagtgctaaaaagaaa-gagctatcaagccatgaaaagacat----gtaactaaaatgcatattactatgtattatt-atgtgaaataagccattttgaaaaggttaattcc-----------aactctctgacattctggaacaggcaaaactatggagacagtaacaaaaatcagtggatgccaagggttag----gaatggatgat---taggcagaacagagagaattttcagtgcag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 150328 424 - 134511895 ctaaatatattcttaccataagacccagcagtcacactccttggtatttacccaaatgaaatgaaaacttatgcccatacaaaaacctgcacacagatgt--------gctttattcaaaattgtcaaaacttcggaagcaaccatgatgtccttaagtaggtgaacagataagtcaactgcagtacatgcagacagtggaatattattcagtgctaaaaagaaatgagctatcaagccatgaaaagacatgcaagtaaccaaaatgcatattactatgcattatt-atgtgaaataagccattttgaaaaggttaattcc-----------aactctccgacattctggaaaaggcaaaactatggagacagtaacaaaaatcagtggataccaagggttag----gaatggatgat---taggcagaacacagagaatttttagtgcag i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29902829 425 - 76506943 cagaacatcctcttatcatacaattcagcaatcacattccttggtatttacataaat-aattaaaa---catgtccacacaaaaacctacacatggaagtttacagcagctttattaataactgtcaaaactt-agaaa----caagatgtctttcagtaagagaatggaaaaccatgatacag-----ccagactatgggatatttctcagcactaaaaagaaatgagctatcaaaccatgaaaaggtat----aaaggaataagcctta--aatgcataatatt-aagtgaaaaaagccaatctgaaaaagctaaatac--tatgaattcaactatatgatactctggaaaaggaaaaactatggaaacagtaa-aaagatccatggttgccaggggttgg-gggaagagagtgatgaataggcagagaat-aagaatgtttagggcag i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3143495 411 + 42029645 cttaacatactcttaccacatgatccaacaattgtatt-cttggtatttac-caatc-aattcaaaacttatactcacacaaaagcctgcaaaaggatgtttatagcagctttctttataattgtcaaaactt-ggaagcaaccaagatactcttcagtaggagaatgcaaaagtaaactgcagttcatctagacaatagaatattattcagcacttaaaagaaatgagctgtttacccacggaaaggtat----a-------------------------------aagttaaagaagccaatctgaaaatgcttactactgtatgatttcaactacatggcattctggaaaaggcaaaatcaggaagacaataa-aaagatcaatagttgccagggattggtggggaaagagtgatgaacaggcagagcacaaaggatttttagtacag i canFam2.chr26 I 273 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_117725.1-32403 23258 3540 + 32403 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=9946.000000 s hg19.chrUn_gl000223 17838 26 + 180455 tgaaattattctataaa--caataatgg--- s rheMac2.chr11 150752 26 - 134511895 tgaaactattctatata--ctacaatgg--- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 176759 26 - 136387465 tgaaactattctatata--caacaatgg--- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 148236 26 - 135371336 tgaaattattctataaa--caacaatgg--- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 27962 24 - 269436 ----ATTAATTTAAAAGATTAATTACAG--- i otoGar1.scaffold_7340.1-269436 n 3540 C 0 s bosTau4.chr17 29903254 15 - 76506943 taaaactattctgta---------------- i bosTau4.chr17 C 0 I 303 s canFam2.chr26 3143906 29 + 42029645 t-aaactattccacatga-taacaatggtgg i canFam2.chr26 C 0 I 494 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=204431.000000 s hg19.chrUn_gl000223 17864 366 + 180455 tATTTGCAGG-AAAAAATCTAGAAAGATTTAGAGccttccttccttcctcccttc------------tttcttccttcctttttcttt-ctttt-ttttttttag--acagagtcttg--ctgtcgcccaggccggagtgcaatggcatgatctcaacttactgcaccctctgcctcctgggctccagcgattcttccacctcagcctccc--gagtagctgggattacaggcgcacaccaccacacccggctaatttttgtatttttagtagagacgggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccacactcagcc s otoGar1.scaffold_7340.1-269436 27986 305 - 269436 TATTTACAGG-AAAAAAT-TAAACTAAATTAGGGTAGt----------ttacttt----------------------------------------ttttcttaagacatagggttttgctctattgtcctggctgaagtgcaatggcataatcacagttcactgtagccta-aactcctgggctctaatgttccttttgtctcagactcctaaaagtagctaggactataggcatgtg-catcacactcggctaattttt-tatttttgataga-aggggtctcagtatgttctccaggctgttatcaaactctt-------------------------gcctctaggagcattataattacaggcatgagccaccatatctggc- i otoGar1.scaffold_7340.1-269436 C 0 C 0 s panTro2.chr12 148262 367 - 135371336 tATGTGCAGG-AAAAAATCTAGAAAGATTTAGAGccttccttccttcctcccttc-------ccttctttcttccttcctttttcttttcttttcttttttttag--acagagtcttg--ctgtcgcccaggccggagtacaatggcatgatctcaacttactgcaacctccgcctcctgggctccagcgattcttccacctcagcctccc--gagtagctgggattacagacgcacaccaccacacccggctaatttttgtatttt-agtagagacgggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgct-----cacaggtgtgagccaccacactcagcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 176785 359 - 136387465 tATTTGCAGG-AAAAAATCTAGAAAGATTTAGAGCCTTCCTTCCTTCCTCCCTTC-------CCttctttcttccttcctt--------------ttttttttag--acagagtcttg--ctgtcgcccaggctggagtgcaatggcatgatctcgacttactgcaacctccgcctcctgggttccagcgattcttccacctcagcctccc--gagtagctgggattacaggcacacaccaccacacccggctaatttttgtatttttagtagagatgggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccagcacacccagct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 150778 370 - 134511895 tATCTGCAGGAAAAAAATCTAGAAAGATTTAGAGccttccttccttcctcccttcctccttcccttctttcttccttcctttttcttt-------ttttcttt-----tagagtcttg--ctgtcgcccaggctggagtgcaatggcatgatctcgacttactgcaacctctgcctcccaggttccagcgattcttccgcctcagcctccc--gagtagctgggattacaagcgcacaccacgacaccctgctcatttttgtatttt-agtagagatgggtttcaccatgttagccaagctggtcttgaactcctaacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcacccAACT i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29903269 303 - 76506943 I e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3143935 494 + 42029645 I a score=122522.000000 s hg19.chrUn_gl000223 18230 132 + 180455 GTA---TTATTTGTATAATAAAGATAAAGAGATATAAATATACAAATTG------------------------------------------ACTAGCATTCCTATAGAGAAGCAATA--------TAGAAAAGAAACTGGGGAAAGTTGCTTAAGAAGAAA-----TAACAGGT---ATGCAACAATT-----CTACA s rheMac2.chr11 151148 134 - 134511895 GTATTTTTATTTCTATAATAAAGATAAAGAGATATAAATATACAAATTC------------------------------------------ACTAACATTCCTATAGAGAAGCAATC--------TAGAAAAGAAACTGAGGAAAGTTGCTTAAGAATAAA-----CAACAGA----ATGCAATGATT-----TTACA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 177144 135 - 136387465 GTATTTTTATTTGTATAATAAAGATAAAGAGATATAAATATACAACTTG------------------------------------------ACTAGCATTCCTATAGAGAAGCAATA--------TAGAAAAGAAACGGGGGAAAGTTGCTTAAGAAGAAA-----CAACAGGT---ATGCAACAGTT-----TTACA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 148629 132 - 135371336 GTA---TTATTTGTATAATAAAGATAAAGAGATATAAATATACAAATTG------------------------------------------ACTAGCATTCCTATAGAGAAGCAATA--------TAGAAAAGAAACTGGGGAAAGTTGCTCAAGAAGAAA-----TAACAGGT---ATGCAACAATT-----TTACA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 28291 140 - 269436 ------cAACTTATATAATAAAGATTAAG------AAATATACAAATTC------------------------------------------ACTAGTATTCCTTTAGAGAAGCCATATAACTTGTTAGAAAAGAAACTGAGAGAAGTTGCTTAAGAATACCT----TGACAggctgggtgcaatgattcatgcctaca i otoGar1.scaffold_7340.1-269436 C 0 I 286 s bosTau4.chr17 29903572 145 - 76506943 ATA---TTATTAAAATGCTAAAGACTGAGAGAGATAAATATACAAAGTC------------------------------------------ATTAGCATTCCTATAGAAAAGCAATATAACTTCTTAGAAAAGAAACTTTAAAAAGTTGCTTAAGAATAAACTCAACAACAGGG---GTACAGAGATT-----TTACA i bosTau4.chr17 I 303 C 0 s canFam2.chr26 3144429 152 + 42029645 ---------------TAATGAAGGCTGAGAGATACAAATATACAAATTCACTACTAGCAttcttttttttttttttttttttttttttACTACTAGCATTCCAATAGAAAAGCAATATAGCCTGT-----AAGAAACTAGGGAAAGTTGCTTAAGAATTAATTcaacaacaa-------------------------- i canFam2.chr26 I 494 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=72938.000000 s hg19.chrUn_gl000223 18362 103 + 180455 AAGAAAATTCAAAATTTTAAGAAGCTGTGCAGGTAACTCCTAAATGTCTACTTTAGTTcagcatcagcatcatctggtcatttgttagaaatgcaaattctgg s panTro2.chr12 148761 103 - 135371336 AAGAAAATTCAAAATTTTAAGAAGCTGTGCAGGTAACTCCTAAATGTCTACTTTAGTTcagcatcagcatcatctggtcatttgttagaaatgcaaattctgg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 177279 103 - 136387465 AAGAAAATTCAAAATTTTAAGAAGCTGTACAGGTAACTCCTAAATGTCTACTTTAGTTcagcatcagcatcatctggtcatttgttagaaaagcaaattctgg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 151282 103 - 134511895 AAGAAAATTCAAAATTTTAAGAAGCTGTGCAGGTAACTCCTAAATGTCTACTTTAGTTcagcatcagcatcatctggtcatttgttggaaatgcaaattctgg i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29903717 101 - 76506943 AAGAAAATTCAAAATCTTGAGAAGCTGTACAGGTAACTCCTAAAAGTGTACTTTAACTcagcatcagtatcacgggggc--ttgttaaaaatgtaaattcttg i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3144581 25 + 42029645 ----------------------------------------------------------caacaacaaca-----------------aAAAGAATAAATTC--- i canFam2.chr26 C 0 I 309 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 28431 286 - 269436 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=52835.000000 s hg19.chrUn_gl000223 18465 97 + 180455 c---------tggtctgaatgcagtggagtttataagtcattgataacaactagttatagatttctttgtttctcctccactc---ccgcttttttttttt------gactagcc- s otoGar1.scaffold_7340.1-269436 28717 98 - 269436 CTCATTCAAGtggtccaagtatagtggtgtttataactaagtgatcaaaaccagttacagacttctttgttctttctccatgc---------------ctc--aggggactagcc- i otoGar1.scaffold_7340.1-269436 I 286 C 0 s panTro2.chr12 148864 99 - 135371336 c---------tggtctgaatgcagtggagtttataagtcattgataacaactagttatcgatttctttgtttctcctccactc---ccgcttttttttttt----ttgactagcc- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 177382 107 - 136387465 c---------tggtctgaatgcagtggagtttataagtcattgataacaactagttacagatttctttgtttctcctccactcacactgcttTTTTTTTTTTTTTTTGACTAGCCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 151385 100 - 134511895 c---------tggtcggaatgcagtggagtttacaagtcattgatcacaactagttacaga----tttgtttctcctccactcccactgcttTTTTTTTTT--TTTGGACTAGCC- i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e bosTau4.chr17 29903818 0 - 76506943 C e equCab2.chr8 64112401 3632 - 94057673 I e canFam2.chr26 3144606 309 + 42029645 I a score=81511.000000 s hg19.chrUn_gl000223 18562 135 + 180455 aaaa------aaaga------aagaaatgcaaattatttggttccaccccaaacctaccaatttag------aatttccagggtggggcctaggaat------------------------atgcatttga----------aGCctctt--------------------------------------------------------gactatgatactcaattgcctactggatttatatattc s rheMac2.chr11 151485 135 - 134511895 AAAA------AAAGA------Aagaaatgcaaattatttggttccaccccaaacctaccaatttag------aatttccagggtggggcttaggcat------------------------atgcatttga----------aACCTCTT--------------------------------------------------------GAATATGatactcaattgcctactggatttatatattc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 177489 135 - 136387465 AAAA------AAAGA------Aagaaatgcaaattatttggttccaccccaaacctaccaatttag------agtttccagggtggggcctaggaat------------------------atgcatttga----------aACCTCTT--------------------------------------------------------GGCTATGatactcaattgcctactggatttatatattc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 148963 135 - 135371336 aaaa------aaaga------aagaaatgcaaattatttggttccaccccaaacctaccaatttag------aatttccagggtggggcccaggaat------------------------atgcatttga----------aACctctt--------------------------------------------------------gactatgatactcaattgcctactggatttatatattc i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 28815 208 - 269436 AAAACCAAACAAAAACTATTTAAaaaaatcaaattcttgggttccaccccaaatctaataatttagtaataagatttctaggataaggcctagcaat----ctcaaa--------------acacatttga----------aacctctttggatgattcttttgaagaataaaatttgaaaggcactTAACTTTCTTAAGCACCAGAATACAGTACCCAATTGCCTACTGGGTTTA------- i otoGar1.scaffold_7340.1-269436 C 0 I 302 s canFam2.chr26 3144915 106 + 42029645 -----------AAAA------AAAAAAAGCAG---------------------------CACTCCA------AATGAC-------------------------------------------TAAAATTTGAGAAGCTTGATGATCTCTT--------------------------------------------TATTAAGCTCCAGAGTATGATACTTGATTGCCTAGTGAATTGATATGGTT i canFam2.chr26 I 309 I 2 s bosTau4.chr17 29903818 147 - 76506943 ---------------------------------------agttctactccacacctaatcactcaa------aatttctggagaggggcctggaagtatgttttaaaacaatccagaggactaaaatttgagaagcactgTgatctctc----------------------------------------------tcaagatctaga-----atattcaattgcctactgaatttatatactt i bosTau4.chr17 C 0 I 2 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=315723.000000 s hg19.chrUn_gl000223 18697 306 + 180455 gtatcccacagagaccc-aaactcaacaagtctca------atataatcttc-cctcccctacaaacttgctgatcctttttttttt----aac---------------taaggaaacaatcataccaccaaaaag----------------------------------------------actaatgtcaaccacgacttctcagtcttcttcatgtctgtcatctagccaatcgccaggtccttttgagtctacttcttcactttatttccaatctgtctacctcccttagctccctggatgc--------ctacatagttcaggtaatgattagatctacactaggttgcagcaacaactcttaaatggtagccctgtttACT s rheMac2.chr11 151620 304 - 134511895 atatcccacagaaacccaaaactcaacaagtctca------atataatcttctcctcccctaccaacttactgatccttttttt--------ac---------------taaggaaacaatcataccaccaaaaag----------------------------------------------actaatgtcaaccacaacttctcagtcttcttcatgtctgccatctagccaattgccaggtccttttgagtctacttcttcactttatttccaatctgtctacctccctcagctccctggatac--------ctacatagttcaggtaatgattagatctacactaggttgcagcaacaactcttaaatggtagccctgtttACT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 177624 308 - 136387465 gtatcccacagagaccc-aaactcaacaagtctca------atacaatcttc-cctcccctacaaacttgctgatcctttttttttt--tttac---------------taaggaaacaatcataccaccaaaaag----------------------------------------------actaatgtcaaccacaacttctcagtcttcttcatgtctgtcatctagccaattgccaggtccttttgaggctacttcttcactttatttccaatctgtctacctccctcagctccctggatgc--------ctacatagttcaggtaatgattagatctacactagattgcagcaacaactcttaaatggtagccctgtttACT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 149098 307 - 135371336 atatcccacagagaccc-aaactcaacaagtctca------atataatcttc-cctcccccacaaacttgctgatcctttttttttt---taac---------------taagggaacaatcataccaccaaaaag----------------------------------------------acgaatgtcagccacgacttctcagtcttcttcatgtctgtcatctagccgatcgccaggtccttttgagtctacttcttcactttatttccaatctgtctacctcccttagctccctggatgc--------ctacatagttcaggtaatgattagatctacactaggttgcagcaacaactcttaaatggtagccctgtttACT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 29325 296 - 269436 GTATACCACAGAGGCCCAGAACTCAACAAGTCTCA------GACTGACATTG-TCTTCCCGACAAACTTGCTCATCTTTCATTTCTT---TTGT---------------TA-----------ATACAAAcaaaaaa----------------------------------------------aatgaagccgaccatgattcttcaatcttcttaaggtctatcatctagccaatcaccagg-ccctatgagtctacttctttaatttacttcccatctgtctacctccctctactccctagacac--------ctccttagttcaggtcatgattacatctagactaggtgatagcaaaaactcttcaatggtaaccttgtttACT i otoGar1.scaffold_7340.1-269436 I 302 C 0 s canFam2.chr26 3145023 383 + 42029645 ATATCCCACAAAGATCCAAAACTCAGTTAGTCACAAATTGAAAAAAATCTTCCCCTTCCCTTCAAAGTTGTTCTTATTTGTTTGTTTAATTTACTTATGACagaaagagaaaagaaaagaaaataaaagaaaagaaaagagaaaaaagaaaaagaaCGAATGAATGAACGAGCACTAAGATGAGTGTTATCAACCACAACTCCTCAATCTTCTTCAGGTCTTGTATCTAGTCAATCTCCAAGTC---CAATCTCCACATCCTTAGGTTAGCAGCC-TGTACAGGGAAGCCTCCCTTCCCTGAACACTTCCACAGTTCCACAGTTCGTGTGATGATTAAATCCAGACCAGGTTATAGAGACAACTCTTAAGTGGTAGCCCTGTTTCCT i canFam2.chr26 I 2 I 2070 s bosTau4.chr17 29903967 304 - 76506943 gtatcc--caaagatccaaaatttagtaagttacaaattg-atataatctttctttt---ttcaaacttgctcatcctttttttctt----------------------ccaagaaataataccaccagcaaaaaa----------------------------------------------agtgatgtcaatcacaattcctcagtcatcgtcatgtcatttatctagtcaatcaccaggtctttctgagttcacgtccttactttgttgcca-tttgtataccttcttccattccctggacac--------ctccatggttcaggtgatgattacatctagattaccttatggaaataactcataaatggctatcctgtttcct i bosTau4.chr17 I 2 I 1490 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I e equCab2.chr8 64112401 3632 - 94057673 I a score=121494.000000 s hg19.chrUn_gl000223 19003 85 + 180455 TAAAATAATTCAGAGAAAA---AAAGGGGCAGGGGTAAGACAAATACAATAAAATGTTAATCATT---AAATCTgtaactaaggctgtata s rheMac2.chr11 151924 85 - 134511895 TAAAATAATTCAGAGAAAA---AAAGGGGCAGGGGTAAGACAAATACAATAAAATGTTAATCATt---aaatctataactaaggctgtata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 177932 85 - 136387465 TAAAATAATTCAGAGAAAA---AAAGGGGCAGGAGTAAGACAAACACAATAAAATGTTAATCATT---AAATCTGTAACTAAGGCTATATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 149405 85 - 135371336 TAAAATAATTCAGAGAAAA---AAAGGGGCAGGGGTAAGACAAATACAATAAAATGTTAATCATT---ACATCTgtaactaaggctgtata i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 29621 87 - 269436 TTAGATAATTCAGAGAAAAATGAATAGAGCA----TGAGGCAAATATAGTAAAACTTTAACCATTATGAAATCTATAACAAAGGCTATATA i otoGar1.scaffold_7340.1-269436 C 0 C 0 s bosTau4.chr17 29905761 84 - 76506943 TGACATTATTCAGC-AAAA---AAAGGAAT-GAGGTGAGGCAAATACAATCAAATGTTATCCAGTATTAAATCCATAACT--GACTGTATT i bosTau4.chr17 I 1490 C 0 s equCab2.chr8 64116033 86 - 94057673 TTAAATTACTCAGC-AAAA---AAAGGAGT-GGGGTGAGGCAAATACTGTAAAATATTATCCattattaaatccatagctaagactgtaca i equCab2.chr8 I 3632 C 0 s canFam2.chr26 3147476 84 + 42029645 ---AATTATTCTACAAAAA---AAAGGAGT-GGAGTGAGGCAAATAAAGGAAAATGTTATCCATTATTTAGTCCAtaactaaggctgtata i canFam2.chr26 I 2070 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=110632.000000 s hg19.chrUn_gl000223 19088 71 + 180455 gatttgagcaaagagaaaa------atgaaagagaattgagaacctagaaacatacaaacacaaaaattga--------------------------------------------cattta s panTro2.chr12 149490 71 - 135371336 gattggagcaaagagaaaa------atgaaagagaattgagaacctagaaacatacaaacacaaaaattga--------------------------------------------cattta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178017 71 - 136387465 GATTTGAGcaaagagaaaa------atgaaagagaattgagaacctagaaacatacaaacacaaaaattga--------------------------------------------cattta i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152009 69 - 134511895 gatttgagcaaagagaaaa------atgaaagagaattgagaacctagaaacatacaaacacaaaaattga--------------------------------------------catt-- i rheMac2.chr11 C 0 C 0 s papHam1.scaffold32318 4791 71 + 18697 GATTTGAGcaaagagaaaa------atgaaagaggattgagaacctagaaacatacaaacacaaaaattga--------------------------------------------cattta i papHam1.scaffold32318 N 0 C 0 s otoGar1.scaffold_7340.1-269436 29708 71 - 269436 AATTTGAGCAACGATAGAAAACTATACAAAATAAAATTGAGGACCCAAAAAC------ACACAAAAATTGA--------------------------------------------CAATTA i otoGar1.scaffold_7340.1-269436 C 0 I 2298 s bosTau4.chr17 29905845 113 - 76506943 GATTTATGCAAAGATAGAAAAATAGA----AAAAAATAGGGAACCCAGAAAC----ATACACAAAAACTTAActttctgaagactgttttggctattcggggtcttttgtgtttccatatg i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64116119 71 - 94057673 aatttatgcaaagatagaaaaacagacaaaaatgaatacagaacccagaa------agacacaaaaattga--------------------------------------------cattta i equCab2.chr8 C 0 C 0 s canFam2.chr26 3147560 73 + 42029645 gacatatgcgagaatagaaaaggaaacaataaaaaacagagaacccataaat----atacacaaatattaa--------------------------------------------cattta i canFam2.chr26 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=27040.000000 s hg19.chrUn_gl000223 19159 51 + 180455 --------ac------------------------------------------------------taatttcaaaa------------------------------------------------------------------------------cagtgaggaaaatggttgatctat--caataaatggtact s panTro2.chr12 149561 51 - 135371336 --------ac------------------------------------------------------taatttcaaaa------------------------------------------------------------------------------cagtgaggaaaatggttgatctat--caataaatgctact i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178088 53 - 136387465 --------ac------------------------------------------------------taatttcaaaa------------------------------------------------------------------------------cagtgaggaaaatggttgatgtatcacaataaatgatact i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152078 49 - 134511895 ----------------------------------------------------------------taatttcaaaa------------------------------------------------------------------------------cagtgaggaaaagggttgatgtat--caataaatggtact i rheMac2.chr11 C 0 C 0 s papHam1.scaffold32318 4862 51 + 18697 --------ac------------------------------------------------------taatttcaaaa------------------------------------------------------------------------------cagtgaggaaaagggttgatgtat--caataaatggtact i papHam1.scaffold32318 C 0 N 0 s bosTau4.chr17 29905958 191 - 76506943 aattgtgaaattttttgttctagttctgtgaaaaatgccattggtaatttgatagggattgcatcaaatctgcagattgcatttggtagtatagtcattttcacaatattgattcttcctacccaggacacAAAAACTTAATTTATGAGTAACcagtgaaggaaaggacagacatat--cagtaaatggtacc i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64116190 59 - 94057673 actcataaaa------------------------------------------------------caaacttaaaa------------------------------------------------------------------------------cagtgagggaaaggacaggcatgt--caataaatggtgcc i equCab2.chr8 C 0 C 0 s canFam2.chr26 3147633 38 + 42029645 agttat--ga------------------------------------------------------caaacctacaa-------------------------------------------------------------------------------------------------catgt--cagcatatgatgcc i canFam2.chr26 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 29779 2298 - 269436 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=231723.000000 s hg19.chrUn_gl000223 19210 173 + 180455 atgataactggatctccatacagaagatagcaaagttgactactaactcacatgac-----aaaat------aaagtgaacgatggatcgaaatgtgaatggcaaaataagtaggcttttttaaaagaaaatataggaagatgtcttcatcataatctcttaggagggaaagatttcttaaaca s rheMac2.chr11 152127 173 - 134511895 gtgataactggatctccatacagaagatagcaaagttgactactaactcacatgac-----aaaat------aaagtgaacaatggatctaaatgtgaatcgcaaaacaagtaggctttttaaaaagaaaatataggaagatgtcttcatcacaatcccttcgtagggaaatatttcttaaaca i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 178141 172 - 136387465 atgataactggatctccatacagaagatagcaaagttgactactaactcacatgac-----aaaat------aaagtgaacaatggatcgaaatgtgaatggcaaaataagtaggtttttttaaaagaaaatataggaagatgtcttcatcataatcccttaggagggaaaga-ttcttaaaca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 149612 173 - 135371336 atgataactggatctccgtacagaagatagcaaagttgactactaactcacatgac-----aaaat------aaagtgagcgatggatcgaaatgtgaatggcaaaataagtaggcttttttaaaagaaaatataggaagatgtcttcatcataatcccttaggagggaaagatttcttaaaca i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29906149 181 - 76506943 ttgagaaatggaagacaacaaagaagacaccaaaattgaccactaagtcatgtgatacacaaaaataaatccaaagtgaaccatggatctaaatgtgaatggcaaaacgactaggcttttaaaaaagaaaatctaggaaaaca---tcatcatgacctcatggtagggaaatatttcttaaaca i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64116249 184 - 94057673 atgataagtggatctctacacagaagagatcaaaattgaccactaactcacatgacaaacaaaaataaactgcaagtggaccatgggtctaaatgtgaatggcaaaatgactaggctttttaaagagaaaatctaggaaaatgttttcatcatgacttcacggtagggaaaaatttcttaaaca i equCab2.chr8 C 0 C 0 s canFam2.chr26 3147671 180 + 42029645 atgataattggatctcctcccagaagaaatcaaaattgaccagtaactcacacaacacacaaaaatcaattcaaagtggacaacagatctaaatgtgattggcaaaatgactaggttt----aagagaaaatataggaaaatgccttcattatgacctcatgatagggaatggtttcttaaaca i canFam2.chr26 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 29779 2298 - 269436 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=267566.000000 s hg19.chrUn_gl000223 19383 213 + 180455 ggctaaaaaaatactaa-----acataaaagaaaagattgatacatctgactacactaaaattaagaatttctgttcatcaaaagaagctatgaaggttaaaaaaaa----gccaca-tgtgaaag---a----ttttgaagtacatacaattagcaaaggatttctatctaaaatatataacttctacaaatcaa---t----aaa-----agaatc--------------------caatagatacaagag-----------aaaaatctt s panTro2.chr12 149785 216 - 135371336 ggctaaaaaaatactaa-----acataaaagaaaagattgatacatctgactacactaaaattaagaatttctgttcatcaaaagaagctatgaaggttaaaaaaaa---agccacaatgtgaaag---a----ttttgaagtacatacaattagcaaaggatttctatctaaaatatataacttctacaaatcaa---t----aaa-----agaatc--------------------caatagatacaagag----------caaaaatctt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178313 217 - 136387465 ggctaaaaaaa-attaa-----acataaaagaaaagattgataaatctgaccacactaaaattgagaatttctgttcatcaaaagaagctataaagggtaaaaaaaaaaaaaccaca-tgtgaaag---a----ttttgaagtacatacaattagcaaaggatttctatctaaaatatataacttctacaaatcaa---t----aaa-----agaatc--------------------caatagacacaagag----------caaaaatctt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152300 217 - 134511895 ggctaaaaaaatactaa-----acataaaggaaaagattgatacatctgactacactaaaattaagaatttctgttcatcaaaataagctatgaaggtaaaacaaaa-taagccaca-tgtgaaag---a----ttttgaagtacatataattagcaaaggatttctatctaaaatatataacttctacaaatcaa---t----aaa-----agaatc--------------------cagtagataaatgag----------caaaaatctt i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_117725.1-32403 26798 212 + 32403 gactaagactatctcaa-----a---ataaaaaaagattgataaatctgaccatattaaaatt-----ttccctttcatcaaaagaggctataaaggggaagaagag-----ccaca-cgtgagagaata----ttttgcagtacatggaattaacaggggatttgtatctaacatatataacttctacaaatcaa---taagaaaa-----agcatc--------------------cagtagatgaatgag----------aaaaatcatt i otoGar1.scaffold_117725.1-32403 I 3540 C 0 s bosTau4.chr17 29906330 254 - 76506943 -catccaaaaaaaaaaaaaacctcataaagggaaagactgatgaatctgaccacactagaattaag-atttctgttcattaaaagaggtt-ttaaggggaaaagtaa----gtcaca-tgtaagag---aagatatttgaagtgaacagaatt-gcaaaggatttgtatccaaaatttgtaactcctacaaaacaa---g----aaaggaatacaataaatgagcaaaaactaagaggcacttcataaatgagggtaaatttataaaaatttt i bosTau4.chr17 C 0 I 170 s equCab2.chr8 64116433 216 - 94057673 -ggtcaaaaaatactaa-----tcataaagagaaagactcataaatctgactacacta-----aagaattttggttcatcaaacgacagtattaaggggaaaagtaa----gccaca-tatgagag---aagatattttcaatgaatataatcaacaaaggatttgtatccaaaatatgtaactcctacaaataag---a----gaagacagagaatc--------------------cagtagataaatgag----------caaa-acctt i equCab2.chr8 C 0 C 0 s canFam2.chr26 3147851 209 + 42029645 -tgt----------taa-----ttctacagggaacaac------atctgaccgcactaaaactaaaaatttccattcatcaaaagaagttattaagggggaaaatat----accata-tgtgagag---aaaacatttgcagtgaaaataattagcgaagcacttgtatctgaaatatctaacttctataaatcaataca----aaagacagagaatc--------------------caatacataaatgag----------caaagacctt i canFam2.chr26 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=203053.000000 s hg19.chrUn_gl000223 19596 182 + 180455 caagattcacttcgcagatgggga-------------------------------------------------------------tacctagat-gttcaataaacatacgaaaaggtgctcaac--tttattaatggcctgacaaatgcaagtttaaacca---caagctaccactgcacacccttctgatagatgaaa---------------------attacgatgcccaac------------------------------------aggcattcacttattgggtttgcgggagtat-aag s panTro2.chr12 150001 182 - 135371336 caagattcacttcacagatgggga-------------------------------------------------------------tacctagat-gttcaataaacatacgaaaaggtgctcaac--tttattaatggcctgacaaatgcaagtttaaacca---caagctaccactgcacacccttctgatagatgaaa---------------------attactatgcccaac------------------------------------aggcattcacttattgggtttgtgggagtat-aag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178530 160 - 136387465 ccagattcacttcacagatgggga-------------------------------------------------------------tacctacat-gttcaataaacatacgaacatgttcgt------------------------atgcaagtttaaacca---caagctaccactgcacacccttctgataggtgaaa---------------------attacgatgcccaac------------------------------------aggcattcacttattgggtttgtgggaatat-aag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152517 181 - 134511895 caagatgtacttcgcagatgggga-------------------------------------------------------------tacctacat-gttcaataaacatgtgaaaaggtgctcaac--ttcattaacagcctgataaattcaagtttaaacca---cgggctaccactgcacacccttctgataggtgaaa---------------------attatgatgcccag-------------------------------------aggcattcacttattgtgtttgtgggagtat-aag i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_117725.1-32403 27010 183 + 32403 taagatgtacttggcaaatgggga-------------------------------------------------------------tatctaaacaattcagtgaacatatgaaaagttgcttaac--ctcatcagtaatctgaaaaatgcacatttaaacca---caagctaccactacacacttttctaataagtgaaa---------------------attatgatgcctaac------------------------------------aggaacagacttactgtgtttgcgaatgtat-aag i otoGar1.scaffold_117725.1-32403 C 0 n 0 s bosTau4.chr17 29906754 298 - 76506943 TAAGAGGCACTTCATAAATGAGGGtaaatttataaaaattttaatttataaattattttataactttatatttattttataaatttataaaaat-cctcaataaacatatgaaaaggtgctcaac--ttcatcagtaatt-gtagaatgcacatttaaactatattaagctcccactgcacacactcctgacaggtgtgctatctcctgacaggtgtgaagattatgatatctaatagtacatggtttt----ggtaaacatggggagcaagaggaactcacttatggtgtctgtg-gagtgcaaag i bosTau4.chr17 I 170 C 0 s equCab2.chr8 64116649 206 - 94057673 caagaggtgctacacaaatgaggg-------------------------------------------------------------tgtctcaat-gtccaataaacacgtgaagaggtgctcaac--ctcatcagtagtcagaaaaattcaagttaaaaccacaataagccggcactgcacactcttctgagaggtgaat---------------------a-aacagtgcctgacagtactgcacagt-----gtgagtgt---------ggggagcgcacttcctgtgcttgtgggagtgt-aag i equCab2.chr8 C 0 C 0 s canFam2.chr26 3148060 223 + 42029645 caagacacacatcacagatgaggg-------------------------------------------------------------tacccaggt-gtccagtaaatatacggaaaggtgctcaacctctcatcagtaatcagaaaaatgcaattttcaaccatagcaacctcccattgcacactcttctgctaggtctgt---------------------attatggtgtcttactgtctggggcattcattagtaagtatgcagaaccaggagaacccacttatggtgttcatgagaatgt-aag i canFam2.chr26 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=80978.000000 s hg19.chrUn_gl000223 19778 46 + 180455 tcagtcaagggtctttggaaaacattttggcattatctaataacat s otoGar1.scaffold_7340.1-269436 32077 46 - 269436 TCAGTAAAGGCTTtttagaaaacatttttatattacccagtaacat i otoGar1.scaffold_7340.1-269436 I 2298 I 1 s rheMac2.chr11 152698 46 - 134511895 tcagtcaagggtctttggaaaacattttggcattatctaatgactt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 178690 46 - 136387465 tcagtcaagggtctttggaaaacattttggcattatctaataacat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 150183 46 - 135371336 tcagtcaaggatctttggaaaacattttggcattatctaataacat i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29907052 46 - 76506943 tcagtaaaaacactttggaaaacattttggcatcatctaatgatgt i bosTau4.chr17 C 0 I 1 s equCab2.chr8 64116855 45 - 94057673 tcagtaaaagcactttgg-aaacatttcagcattatctaatgatgg i equCab2.chr8 C 0 I 1 s canFam2.chr26 3148283 46 + 42029645 tcagtaaaagcactctggaaaacatttttgcattatctcctgatat i canFam2.chr26 C 0 I 1 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 184018 6921 + 667635 I a score=324092.000000 s hg19.chrUn_gl000223 19824 208 + 180455 aaagaggtgcattatcctcc-aacttggcaattccagtcctagatataaaccacagagaaacttgtgccaatatgtatcaggatacatgcacagtaacag----------------------cattgc--ttgc-agtatctctaaatgtgcaaaaaacttaag-aagccctcaatagtagaacgaataaattgt-ggtatactta--tcgtacaatgaaaaaaactattagagcaat s panTro2.chr12 150229 208 - 135371336 aaagaggtgcattatcctcc-aacttggcaattccagtcctagatataaaccacagagaaacttgtgcccatatgtatcaggatacatgcacagtaacag----------------------cattgc--ttgc-agtatctctaaatgtgcaaaaaacttaag-aagccctcaatagtagaacgaataaattgt-ggtatactta--tcgtacaatgaaaaaaactattagagcaat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178736 209 - 136387465 aaagagatgcattatcctcc-aacttggcaattctagtcctagatataaaccacagagaaacttgtgccaatatgtatcaggatacaggcacagtaacag----------------------cattgc--ttgc-agtatctctaaatgtgcaaaaaacttaag-aagccctcaatagtagaacgaataaattgt-ggtatactta-cttgtacaatgaaaaaaactattagagcaat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152744 186 - 134511895 aaagaggtgcattatcctcc-aacctggcaattccagtcctatatataaaccacagagaaac--gtgccaatatgcatcaggatacaagcacagtaacat----------------------aattgc--ttgc-agtatctctaaatgtgcaaaa-----aag-aagccctcaatagtagaaagaataaattgt-agtatactta-cttgtacaacgaaaa---------------- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32124 190 - 269436 aaagaggtatgttgtcttcc-aatccaacaattccagtccttgatacatcccacagaaaaacctgtgccgttatgtaccaggagacaggtacgatagcaa----------------------cattgt--ttgc-atcatctctaaat-taccaacaacctaag-aaactctcagctgtagactggatacgctgt-ggtatacttaacttgtacaatga------------------- i otoGar1.scaffold_7340.1-269436 I 1 C 0 s cavPor3.scaffold_248 190939 232 + 667635 aaagagatgccttaccctctaaacccaacaattccagtcctatgtatataccacagagaaacctgagccagtat--accaagatataaatacaacagcaataaaatgcaataataatatctctattgcaatagt-aatatctctaaaactgagaacagcctaag-aagccctcaacaccagactgggaaaactgt-gttgtgcctc-cttacacaataaaacaagtaagtatagcaac i cavPor3.scaffold_248 I 6921 C 0 s bosTau4.chr17 29907099 207 - 76506943 aaagaggcacatcatcctct-ggctcagcaatcccagttctagatataaaccatag-gaaccctgtgccaggatgtgccaggacccaaggacaacagcaa----------------------tgttac--ttac-aacagccctaaac-tgcaaataacccaag-aacctgtcaataacagaatggataaactgg-gttgtatcta-cttgtacaatgaaacaaactcgtagatcaat i bosTau4.chr17 I 1 I 22 s equCab2.chr8 64116901 180 - 94057673 gaagaggtgcatgagcctct-gacccagcaattccagtcctag---------------aaacctgtgccggtatgtgccaggataccgggacaacagcaa----------------------cactgc--ttgcaaacagcccgaaat-tgcaaacaaaccaagaaagccttcaataatagaatgggtaaattgg-ggtgtact-----tgtacaatgaaccaaact----------- i equCab2.chr8 I 1 I 18 s canFam2.chr26 3148330 208 + 42029645 aaagaggtacaccatcctct-gccccagcaattctaggcctagaaagacaccacaa-caaacctgtgccagtctgcacctgggcacaaggacaatagtaa----------------------cgttgc--ttgc-aacagccctaaaa-tgcaaacaacccaag-aagccctcaataacagaatggataaattggtggggtactga-tgtgtacaatgaaacaaactaccacagtaat i canFam2.chr26 I 1 I 10 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=10102.000000 s hg19.chrUn_gl000223 20032 30 + 180455 -tacgttaaaaattcttttaacttttaaaaa s panTro2.chr12 150437 30 - 135371336 -tacgttaaaaattcttttaacttttaaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178945 30 - 136387465 -tacgttaaaaatttttttaactttaaaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152930 24 - 134511895 -------aaaaatttttttaacttttaaaaa i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32314 12 - 269436 -------------------cactactagaga i otoGar1.scaffold_7340.1-269436 C 0 C 0 s cavPor3.scaffold_248 191171 23 + 667635 atgc---ataaatcttt-----ttttaaaaa i cavPor3.scaffold_248 C 0 I 191 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29907306 22 - 76506943 I e equCab2.chr8 64117081 18 - 94057673 I e canFam2.chr26 3148538 10 + 42029645 I a score=32921.000000 s hg19.chrUn_gl000223 20062 68 + 180455 aatagggtcttgctgtattgcccaggctggagtgcagtggcacaatcatagttcactgcagcctgaaa s panTro2.chr12 150467 68 - 135371336 aatagggtcttgctgtattgcccaggctggagtgcagtggcacaatcacagttcactgcagcctgaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 178975 68 - 136387465 aataggatcttgctctattgcccaggctggagtgcagtggcacaatcatagttcactgcagcctgaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 152954 68 - 134511895 aatagggtcttgctctgttgcccaggctagagtgcagtggcacaatcacagttcactgcagcctgaaa i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32326 16 - 269436 aata----------------------------------------------------tgcagaatgaaa i otoGar1.scaffold_7340.1-269436 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 191194 191 + 667635 I e bosTau4.chr17 29907306 22 - 76506943 I e equCab2.chr8 64117081 18 - 94057673 I e canFam2.chr26 3148538 10 + 42029645 I a score=82079.000000 s hg19.chrUn_gl000223 20130 161 + 180455 ctcctaggctcaagtggttctcttacctcaacctctcaagtagctaggactatgggcacatgccaccatgcctagctagcttttaaaatttttttgtggagacagggtctctctatgttgcccaggcttgtcttcaactcctggcctcaagtgattctccc s panTro2.chr12 150535 161 - 135371336 ctcctaggctcaagtggttctcttacctcaacctctcaagtagctaggactatgggcacatgccaccatgcctagctagcttttaaaatttttttgtggagacagggtctctctatgttgcccaggcttgtcttcaactcctggcctcaagtgattctccc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179043 157 - 136387465 ctcctcagctcaagtgattctcttacctcaaactctctagtagctaggactatgggcacatgccaccatgc----ctagcttttaaattttttttgtggagacagggtctctctatgttgcccaggcttgtcttaaactcctggcctcaagtgattctccc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153022 161 - 134511895 ctcctaggctcaagtggttctcttgcctcagcctctcaggtagctagaactatgggcacatgccaccatgcctagctagcttttaaaaattttttgtagagacagggtctctctaggttgcccaggcttgtcttaaactcctggcctcaagtgattctccc i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32342 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 191194 191 + 667635 I e bosTau4.chr17 29907306 22 - 76506943 I e equCab2.chr8 64117081 18 - 94057673 I e canFam2.chr26 3148538 10 + 42029645 I a score=19504.000000 s hg19.chrUn_gl000223 20291 43 + 180455 aactcagcctcccaaagtattggaattataggcatgagccacc s panTro2.chr12 150696 43 - 135371336 aactcagcctcccaaagtattggaattataggcatgagccacc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179200 43 - 136387465 aactcagcctcccaaagtattggaattataggcatgagccacc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153183 43 - 134511895 aactcagtctcccaaagtattggaattataggcatgagtcacc i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32342 5 - 269436 aactc-------------------------------------- i otoGar1.scaffold_7340.1-269436 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 191194 191 + 667635 I e bosTau4.chr17 29907306 22 - 76506943 I e equCab2.chr8 64117081 18 - 94057673 I e canFam2.chr26 3148538 10 + 42029645 I a score=33124.000000 s hg19.chrUn_gl000223 20334 41 + 180455 atgcacagccaaaaacattttaaaaataatttt--gagaagca s otoGar1.scaffold_7340.1-269436 32347 24 - 269436 -----------------ttttaaaaatttttga--ggaaagca i otoGar1.scaffold_7340.1-269436 C 0 C 0 s rheMac2.chr11 153226 41 - 134511895 atgcacagccaaaaacatttttaaaataatttG--Gagaagca i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 179243 41 - 136387465 gtgcacagccaaaaacattttaaaaataatttt--gagaagca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 150739 41 - 135371336 atgcacagccaaaaacattttaaaaataatttt--gagaagca i panTro2.chr12 C 0 C 0 s canFam2.chr26 3148548 31 + 42029645 ----------gcataaatcttaaaagtactttt--gaaaagca i canFam2.chr26 I 10 C 0 s equCab2.chr8 64117099 32 - 94057673 atgcata--------aatcttaaaa-taatctt--gagaagca i equCab2.chr8 I 18 C 0 s bosTau4.chr17 29907328 19 - 76506943 ------------------------aataattttgagagaagta i bosTau4.chr17 I 22 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 191194 191 + 667635 I a score=287040.000000 s hg19.chrUn_gl000223 20375 269 + 180455 aatc-------aataaatacattataaatctttctatataaagttaacaaacacatgaacctcaactatagtgaac-acaaatgcaaagagctgatgga-acaataaagaaaacca----aggaagctactttaccataaaagcaaagagat--gattagctttattggagg------g-----------ttaggatgagcacacagaaggctctcaaggaacctagcagtattgtgtttattgac---ct------tggtcacgtgactgtttgccttataat-aatttattaagctgtacatgtatgtt s panTro2.chr12 150780 269 - 135371336 aatc-------aataaatacattataaatctttctatataaagttaacaaacacacaaacctcaactatagtgaac-acaaatgcaagcagctgatgga-acgataaagaaaacca----aggaagctactttaccatgaaagcaaagagat--gattagctttattggagg------g-----------ttaggatgagcacacagaaggctctcaaggaacctagcagtattgtgtttattgcc---ct------tgggcacatggctgtttgccttataat-aatttattaagctgtacatgtatgtt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179284 264 - 136387465 aatc-------aataaatacattataaatctttctatataaagttcacaaacacacaaac-----ctatagtgaac-acaaatgcaaacagctgatgaa-acgataaagaaaacca----aggaagctactttaccataaaagcaaagagat--gattagctttattggagg------g-----------ttaggatgagcacacagaaggctctcaaggaacctagcagtgttctgtttactgac---ct------tggtcacatgggtgtttgccttataat-aatttagtaagctgtacatgtatgtt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153267 268 - 134511895 aatc-------aataaatacattataaatctttctatataaagttcacaaacacacaaacctaaactataatgaac-acaaatgcaaacagctgattaa-actataaagaaaacca----aggaagctactttaccataagagcaaagagat--gattggctttattggagg------a-----------tgaggatgagcacacggaaggcttgcaagaaacctagcagtgttgtgcttattgac---ct------tggtcacatgggtgtttgccttatagt-aatttattaag-tatacatgtatgtt i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32371 268 - 269436 aatcacaatataataaacacactatgagaccttttatatgaagatcacaaacatactaacctatatgatagTGAAAGAGAGACGCAAACAGCTGATGAA-ACTGAAATGAAAACCA----AGTAAGTTACCTTACCATCAAAGTAAGGAGAT--GATGACCTTGGTTGaggg------a-----------ctgggatgggcacccagaaggctctc-agggatctggcagtgc--tgtttactgac---tg------cagt------gttgtctttcttgtaat-aatttgttaagctgtagatttaggat i otoGar1.scaffold_7340.1-269436 C 0 C 0 s cavPor3.scaffold_248 191385 224 + 667635 AATC-------AATAA--------------TGTCTGTGCAAATATTTCAAACTC-----------------TGAAT----AGTATGTGCTGCTTGTAAATATTCTGGATAAGAT---------ACTCAACTGTACCACAAAAGCAGAAACAT------ACCTCCAGTTTGGA------A-----------CTGGTATAGGCAGACACA----CCTC-AGGGATGTGGCAGTAA-GTGTCTATTTACTATCT------TGGTTACCTGGGTAT-TATCTGGTAATAAACCCGTTAGGCTCCACATCTATGTG i cavPor3.scaffold_248 I 191 C 0 s canFam2.chr26 3148579 239 + 42029645 aatcac-----aatacatacattatgaaccc-tctagatgaagttcacaaacatactcattt-aactatagtgatt-agagatacaaacaGTTGACAAG-GTTTGTCAAGTAACCAAACCAGTAAGTTGC--TCCCA------TAAAGAGAA--GACTGCCTCTAGGTAGGG------AAGGGGTGA--------------GCACACAGTGCTCTT-A------------------------TGAC---GTGAGCAGTGGTTACATGCATAT----CTTTCAAT-AATTTGTTAAGCTGTACATTCATTTT i canFam2.chr26 C 0 I 769 s equCab2.chr8 64117131 279 - 94057673 aatcac-----aatacatacattataagcccttctatataaagttcacaaacatacaaatccaaactgtagtgatc-agatatacaaacagctgataaa-gctctaaagaaaacca----aggaagttac--tagcattaaagtaaggagac--catgccctttgggccggg------ggggagtgacgactgg--cgaggacacagaaagctctt-agggacctggcagtgttctgtttactgac---ctgagtggcagttacataggtgt----ctgttaat-aattttgaaagctgcacatttatgtt i equCab2.chr8 C 0 I 1 s bosTau4.chr17 29907347 276 - 76506943 aattag-----aacatacatattatgattatctgtataaaaagttcacaaacatacagatgtaaac--aagtgact-agagacacaaacagttgaaaaa-actataaagaaaacca----aggaagttac--tatcat-----taaagaaaattaattacctttgcagggggtgcagtggggggtga---ctgggatgagcacccaaagagctctt-agggactcaggacttctgtgtttactgac---ctgagtggtagttacatgggtgt----cttataat-aattt---aagctgcatgtttatgtt i bosTau4.chr17 C 0 I 1 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=42484.000000 s hg19.chrUn_gl000223 20644 78 + 180455 catgcattacttctgtctgtgtgtga--tatttcacaatgaaaaaaa----------------------------------------------------------------ttTTCAAAATAA-----------------------GATCCTGGAAGGAATACATAA s panTro2.chr12 151049 78 - 135371336 catgcattacttctgtctgtgtgtga--tatttcacaatgaaaaaAA----------------------------------------------------------------TTTTCAAAATAA-----------------------GATCCTGGAAGGAATACATAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179548 74 - 136387465 catgcattacttctgtc----tgtga--tatttcacaatgaaaaaAA----------------------------------------------------------------TTTTCAAAACAA-----------------------GATACTGGAAAGAACACATAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153535 78 - 134511895 catgcattacttctgtctgtgggtga--tatttcacaatgaaaagAA----------------------------------------------------------------TTTTCAAAATAA-----------------------GATACTGGAAGGAACACATAA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32639 77 - 269436 tatgcattatttttgtctgtgtgcaa--tatttgacaacaaaaagaa-----------------------------------------------------------------tttcaaaataa-----------------------GACTCTAGAAGAAATATATAA i otoGar1.scaffold_7340.1-269436 C 0 C 0 s cavPor3.scaffold_248 191609 46 + 667635 AATGCATTA------------TAAGA--TGCTTC-CAATAAAAGAGA----------------------------------------------------------------TTTTTTAAACAC-----------------------AA------------------- i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29907624 159 - 76506943 tatgccttatttc--------tgtgagctatttcacctttcaaaaAAGTTATGGGggaacagttcctcagaactatctgaggtgctgtctcccgggctgcagtgctcattttgccccaaataaaatttaactcGCCAAAAAAAGGGGGTACTGGAAGGAGCACACAA i bosTau4.chr17 I 1 C 0 s equCab2.chr8 64117411 48 - 94057673 tatgcaatatttg--------tatga--catttcaccttccaaaaAC---------------------------------------------------------------------------------------------------AGTACTGGAAG---------- i equCab2.chr8 I 1 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e canFam2.chr26 3148818 769 + 42029645 I a score=34767.000000 s hg19.chrUn_gl000223 20722 25 + 180455 AAACTTCAAGAACTGTGTTAAAGTA s rheMac2.chr11 153613 25 - 134511895 AAACTTCAAGAACTGTGTTAAAGTA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 179622 25 - 136387465 AAACTTCAAGAACTGTGTTAAAGTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 151127 25 - 135371336 AAACTTCAAGAACTGTGTTAAAGTA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 191655 25 + 667635 AAGCTGCAAGAGCTATATTTAAAAA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29907783 25 - 76506943 AAATTTCAAGAGCTATATTAAAGTA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3149587 25 + 42029645 AAATTAGCAGAACTGTATTAAAGTA i canFam2.chr26 I 769 I 138 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32716 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e equCab2.chr8 64117459 0 - 94057673 C a score=1331.000000 s hg19.chrUn_gl000223 20747 12 + 180455 GTAGAATT--Aggc----------------------------------- s rheMac2.chr11 153638 12 - 134511895 GTAGAATC--Aggc----------------------------------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 179647 12 - 136387465 GTAGAATT--Aggc----------------------------------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 151152 12 - 135371336 GTAGAATT--Aggc----------------------------------- i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 191680 12 + 667635 GTAGGAGT--TGAT----------------------------------- i cavPor3.scaffold_248 C 0 I 53 s bosTau4.chr17 29907808 49 - 76506943 GTGGTATTCGAGGCTTTTTATTCAACTCATTCTTTGATGAGGAAGTTTC i bosTau4.chr17 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32716 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e equCab2.chr8 64117459 0 - 94057673 C e canFam2.chr26 3149612 138 + 42029645 I a score=23029.000000 s hg19.chrUn_gl000223 20759 41 + 180455 caggcacagtggctcacacctgtaatcccagcactttggga s panTro2.chr12 151164 41 - 135371336 caggcacagtggctcacgcctgtaatcccagcactttggga i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179659 41 - 136387465 caggcacagtggctcacgcctgtaatcccagcactttggga i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153650 41 - 134511895 tgggcgcagtggctcacgcctttaatcccagcactttggga i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29907857 40 - 76506943 TGGGCAC-TTGTCCCACCTTGTGACTTTCAGCCATACGGGA i bosTau4.chr17 C 0 I 284 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32716 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 191692 53 + 667635 I e equCab2.chr8 64117459 0 - 94057673 C e canFam2.chr26 3149612 138 + 42029645 I a score=34747.000000 s hg19.chrUn_gl000223 20800 66 + 180455 ggcctaggcgggcagatcactaggttaggagtttgagaccagcctggccaacatggtgaaacccca s panTro2.chr12 151205 66 - 135371336 ggcctaggcgggcagatcactaggttaggagtttgagaccagcctggccaacatggtgaaacccca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179700 66 - 136387465 ggcctaggcaggcggatgactaggttaggagtttgagaccagcctggccaacatggtgaaacccca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153691 66 - 134511895 agcctaggtgggcggatcacaaggtcaggagtttgagaccagcctggccaacatggtgaaacccca i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32716 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 191692 53 + 667635 I e bosTau4.chr17 29907897 284 - 76506943 I e equCab2.chr8 64117459 0 - 94057673 C e canFam2.chr26 3149612 138 + 42029645 I a score=32530.000000 s hg19.chrUn_gl000223 20866 62 + 180455 tctctactaaaaatacaaaacttagccaggcatggtggcagg------tgcctgtagtcccagttact s rheMac2.chr11 153757 62 - 134511895 tctctactaaaaatacaaaaattagccaggcgtggtggcagg------cgcctgcaatcccagttact i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 179766 62 - 136387465 tctctactaaaaatacaaaacttagccaggcatggtggcagg------tgcctgtagtcccagttact i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 151271 62 - 135371336 tctctactaaaaatacaaaacttagccaggcatggtggcagg------tgcctgtagtcccagttact i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 191745 67 + 667635 TTGTTACTTTAAAAAAAAAAATTAG-AAGAAAAGCTAGCACAgacccctgcctatagtcccagctact i cavPor3.scaffold_248 I 53 C 0 s otoGar1.scaffold_7340.1-269436 32716 19 - 269436 ---------AAATTGCAAGACCTA----------------------------------------TATT i otoGar1.scaffold_7340.1-269436 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29907897 284 - 76506943 I e equCab2.chr8 64117459 0 - 94057673 C e canFam2.chr26 3149612 138 + 42029645 I a score=17046.000000 s hg19.chrUn_gl000223 20928 27 + 180455 cagg-----gggctgaagcagcagaatcactt s cavPor3.scaffold_248 191812 32 + 667635 caggaaaccaagcagaggcagtagaactactt i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 151333 27 - 135371336 cagg-----gggctgaagcagcagaatcactt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179828 27 - 136387465 cagg-----gggctgaggcagcagaatcactt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153819 27 - 134511895 cggg-----aggctaaggcaggagaatcgctt i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32735 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29907897 284 - 76506943 I e equCab2.chr8 64117459 0 - 94057673 C e canFam2.chr26 3149612 138 + 42029645 I a score=24977.000000 s hg19.chrUn_gl000223 20955 94 + 180455 gaacccagacagcggaggttgcagtaagctgagatcgcgccatcgcactccagcctagggggcaagagcgagacttcgtctcaaaaaaaaaaa-a s rheMac2.chr11 153846 95 - 134511895 gaacccggacagcagaggttgcagtgagctgagattgtgccatcacactctagcctggggtacaagagtgagactttgtctcaaaagaaaaaaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 179855 93 - 136387465 gaacccagacaacggaggttgcagtaagctgagatcgcaccatcgcactccagcctggggggcaacagcgagacttcgtctcaaaaaaaaaaa-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 151360 93 - 135371336 gaacccggacagcggaggttgcagtaagctgagatcgtgccatcgcactccagcctagggggcaagagcaagaatttgtctcaaaaaaaaaaa-- i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 191844 24 + 667635 gacccc-------------------------------------CTCGCTCCA-------------------------AGTTCAAAA--------- i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64117459 27 - 94057673 GAATACAGACTGTGAGAGCTGTATTAC-------------------------------------------------------------------- i equCab2.chr8 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 32735 0 - 269436 C e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29907897 284 - 76506943 I e canFam2.chr26 3149612 138 + 42029645 I a score=43150.000000 s hg19.chrUn_gl000223 21049 47 + 180455 aaaGTAGTAGAATTAGAGGCAA--CTTCCATGTTTTCCTTTTTCCTCAC s ponAbe2.chr12 179948 45 - 136387465 --aGTAGTAGAATTAGAGGCAA--CTTCCATGTTTTCCTTTTTCCTCAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 153941 47 - 134511895 aaaGTAGTAGAATTAGAGGCAA--CTTCCATGCTTTCCTTTTTCCTCAC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_7340.1-269436 32735 49 - 269436 AAAGTCGTGGAATTAGAGTAAATTTTTTCATGTTTTCTGTTTTCCTCAC i otoGar1.scaffold_7340.1-269436 C 0 C 0 s equCab2.chr8 64117486 45 - 94057673 --AGTCATAGAATTAGAAACAA--TTTTTCCATTTGTCCTTTACCTCAC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3149750 43 + 42029645 ---GTAGTGGAATTAGAGGCAA--TTTTTCTGTTTGACCTTT-CCTCAC i canFam2.chr26 I 138 C 0 s cavPor3.scaffold_248 191868 6 + 667635 -------------------------------------------CCCTAC i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 151453 41 - 135371336 ------GTAGAATTAGAGGCAA--CTTCCATGTTTTCCTTTTTCCTCAC i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29907897 284 - 76506943 I a score=173625.000000 s hg19.chrUn_gl000223 21096 343 + 180455 TTCCTTTGTACATGCTTTTATCAGTTTTGTTATTTTTTAATTC-A----------AAAAGGACATTTTTCCTCATTTGCTCCCAC--TAAACAAAG-----TTTCCCTGCACCTGTTCCATCTCACTGCTTCAGCCCACATTAGTACCTCCTTTGCAAATCCTTCTGGACATTCTCCTAA---------GGGACTCCGCAGCATTTCATATG-------------------------------------------------------------------------AACCACTACTCT-TCCTTAAA--------------GCTAC-----------------------AGCTCAGTTTTCATGACATCTGT----------TTCA---------TCAGTC---CT---AAGCTGCTGCCTCCTAAAAAGT--------ACGCATTCCTCCTTTTCTCTC---------------TA-AA-----------AATCAGTGTACCTCCATTAAACATGTGCTATAGAAGCAACTATAGAATTTA s panTro2.chr12 151494 343 - 135371336 TTCCTTTGTACATGCTTTTATCAGTTTTGTTATTTTTTAATTC-A----------AAAAGGACATTTTTCCTCATTTGCTCCCAC--TAAACAAAG-----TTTCCCTGCACCTGTGCCATCTCACTGCTTCAGCCCACATTAGTACCTCCTTTGCAAATCCTTCTGGACATTCTCCTAA---------GGGACCCCGCAGCATTTCATATT-------------------------------------------------------------------------AACCACTACTCT-TCCTTAAA--------------GCTAC-----------------------AGCTCAGTTTTCATGGCATCTGT----------TTCA---------TCAGTC---CT---AAGCTGCTGCCTCCTAAAAAGT--------ACGCATTCCTCCTTTTCTCTC---------------TA-AA-----------AATCAGTGGACCTCCATTAAACATGTGCTATAGAAGCAACTATAGAATTTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 179993 346 - 136387465 TTCCTTTGTACATGCTTTTATCAGTTTTGTTATTTTTTAATTC-A----------AAAAGGACATTTTTCCTCATTTGCTCCCAC--TAAACAAAG-----TTCCCCTGCACCTGTTCCATCTCACTGCTTCAGCCCACATTAGTACCTCCTTTGCAAATCCTTCTGGACATTCTCCTAA---------GGGACTCCACAGCATTTCATATTAAC----------------------------------------------------------------------AACCACTACTCT-TCCTTAAA--------------GCTAC-----------------------AGCTCAGCTTTCATGGCATCTGT----------TTCA---------TCAGTC---CT---AAGCTGCTGCCTCCTAAAAAGT--------ACGCATTCCTCCTTTTCTTTC---------------TA-AA-----------AATCAGTGTACCTCCATTAAACATGTGCTATAGAATCAACTATAGAATTTA i ponAbe2.chr12 C 0 I 16 s rheMac2.chr11 153988 326 - 134511895 TTCCTTCGTACATACTTTTATCGGTTTTGTTATTTTTTAATTC-A----------AAAAGGATATTTTTCCTC-TTTGCTCCCAC--TAAATGAAG-----TTTCCCTGCACCTGTTCCACCTCATGGCTTCAGCCCACATTAGTACCTCCTTTGCAAATCCTTCTGGACATTCTCCTAA---------CGAACTCTGCAGCATTTCATATTAAC----------------------------------------------------------------------AACCACTACTC--TCCTTAAA--------------GCTAC-----------------------AGCTCAGTTTTCATGGCACCTGT----------TTCA---------TCAGTC---CT---AAGCTGCTGCCTCATAAAATGT--------ATGCATTCCTCCTTTTTTCTC---------------TA-AA-----------AATCAGTGTACCTCCATTAAACATCTGCTGTAg------------------ i rheMac2.chr11 C 0 I 670 s otoGar1.scaffold_7340.1-269436 32784 356 - 269436 TTTCCTTATACATGTTTTTATTGGTT---TTATTTCTTAATTTAA----------AAAAGGACATTTTTCTTCTTTAATTCACAC-TTACATGACA-----TTTCTCTGCACATGTTCCACCTCATGACTTCAGTGCGCATTAGTACCTTCTTTCCAAATCATTCTCTATATCCTCCTAC-----GGATGGGTCCCTGTTACATTTGGAATT-------------------------------------------------------------------------ATCTACCACCGTCTCCTTAAA--------------GCTTC-----------------------AGCT--GTTTTCATGGCATCTGT----------CTCCCT-------TCAGTCCTTCT---ACACTGCTGCTTCCT-AAATGT--------AGCCATTCTTTCTCTTCTCTCAGGGGGAACACTCTTGA-AA-----------GGTCAGTGTACCTCCATTGAACATTTGCTTGAGAATCAACTAA-------- i otoGar1.scaffold_7340.1-269436 C 0 C 0 s cavPor3.scaffold_248 191874 461 + 667635 CTCATTTTCA-------TTCTCATTCTCAACAACATTTA-----G----------AAAAGAACATTTTTCTTGTTTATCTCACAC-TTAAATGAAG-----TCTCCCTGTACTTGCTGCACCTCATGACTTTAGC-CATACCGGTATCTTCTTCCCAAATCCTCT---GCAGCCTCCTAGATAGTGCACCAGTTTCGGTCGTGTATGATACTAATGACACACTGGCCCTGTGGGCTGAGCTCAGTTTTTTTTGTCTTTTTcctttttatcggtaccagggatcgaactcacgactgcctacttgcaaggcaggcgcttatgctgctgagctaaatccctagccccCTGAGCTCAGTTTTTACAGCATCTGTTTCCTGTTCCTTCA---------TCAGGA---CTTACAATCTACTGCTTATT-GAATAC--------ACATATTTCTCCTTTTTTCTC---------------AACAG-----------GAGCACTTTCTAACCA-CAGACCTTTGCTTCAGAACCAACTATAAAAGTAA i cavPor3.scaffold_248 C 0 I 269 s bosTau4.chr17 29908181 227 - 76506943 TTGATTTTTAAAGAGCTTCACCAGCAATTTTATTTCA-------A---------------------------------------CCTAACATGAAGAAGGCTTTCAAAGCCCTT---------------CTCAATCAATCTCATTGCTT-CT----------------ATTTTTTCC--------------TTCTTAATACAAGATTCCCAC-------------------------------------------------------------------------TTTTACATTCCTAATTTGAA---------------------------------------------TT--CTTTTC-TAAGACATAT----------TCCAGT---------------------AGTCTGTTGCACCTC----TCTACTTGGAAATACCGTCCTCTACTCACACC---------------AT-GC------------------ATATCTC------------------------------AAACT-- i bosTau4.chr17 I 284 C 0 s equCab2.chr8 64117531 337 - 94057673 TTCCTCTGTACATAGTTTTATTGGTTTTATTATTTTA-------AAAACATTGAGAAAAGGACATTTTTCTTC---CACTCAAACATTAAATGAAG-----TCTCCCTGCCCTCGTTCCCCCTCGTGACTTCAGCCCCCATCAGTCCTT---------------------TCCTTCCA-----------CGTCCTCTGC------TGTGTCC-------------------------------------------------------------------------TCCTGCAGGTCTCCCCTTAAA--------------GCCAG-----------------------CGCTCAGTTTTCGTGGCACCTTC----------TCCTGGTCCCTCAGCAGGC---CTTCCAGGCTGCTGCTTCCC----TGT--------AAGCTTTCCTCCTGCTGTTTC---------------AA-CAGGACCACTAGAGGCCAGGATGCCTCCGCTGGAAGTTTGCTTCAGAAGCATCTATAGAACTTT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3149793 328 + 42029645 TTCCCTTGTACACAGTTCTATCAGTTTTATTACTTTT-------A----------CACAGGACATTATTCTTC---AACTC-CTCCTTAAATGAAGAAA--TCTCCCTGCACTTGCTTGAACTCGTAACTTCAGCCCACATCACTGCTTACT----------------ACACCCTCCT-----------GGATCTCTGCAGCAAGTGAGCCT-------------------------------------------------------------------------CACTGCCGTCAGCACCTGAGA--------------GCTGG-----------------------AGCT--ATTTTC---ACAGCTGC----------TCCGGTTCCCCTATCAGA----CTCCCAAACTACTGCTTCCC----TGTCCGTG--AGAGCATTCCTCCTGTTATGCC---------------AG-GA--------AATAGTCAGTACACCTCCATCAGAGGT----Tttagaatcaactaaagaactta i canFam2.chr26 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=2504.000000 s hg19.chrUn_gl000223 21439 12 + 180455 CAGAACTT------------------------------------ACAG---------- s rheMac2.chr11 154984 12 - 134511895 CAGAACTT------------------------------------ACAG---------- i rheMac2.chr11 I 670 C 0 s ponAbe2.chr12 180355 12 - 136387465 CAGAACTT------------------------------------ACAG---------- i ponAbe2.chr12 I 16 C 0 s panTro2.chr12 151837 12 - 135371336 CAGAACTT------------------------------------ACAG---------- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 33140 12 - 269436 TAGAACTT------------------------------------ACAG---------- i otoGar1.scaffold_7340.1-269436 C 0 C 0 s equCab2.chr8 64117868 8 - 94057673 TGGAACTT-------------------------------------------------- i equCab2.chr8 C 0 I 289 s canFam2.chr26 3150121 58 + 42029645 tagaagttttcataaatacagaatttaagctccatacatctatgacagaatcttccag i canFam2.chr26 C 0 I 217 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 192335 269 + 667635 I e bosTau4.chr17 29908408 0 - 76506943 C a score=67231.000000 s hg19.chrUn_gl000223 21451 25 + 180455 AATTCATCACCTTTTCTCCAAAACT s rheMac2.chr11 154996 25 - 134511895 AATTCATCACCTTTTCTCCAAAAAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 180367 25 - 136387465 AATTCATCACCTTTTCTCCAAAACT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 151849 25 - 135371336 AATTCATCACCTTTTCTCCAAAACT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 33152 23 - 269436 AACT--TTTCTTTTTCTTTAGAACT i otoGar1.scaffold_7340.1-269436 C 0 I 2621 s oryCun2.chrUn0106 641497 25 + 1032594 AATTCATCTCCTTTTCTCCAAAAGT i oryCun2.chrUn0106 N 0 C 0 s cavPor3.scaffold_248 192604 24 + 667635 AATTTGTCT-TTTTTCTCTAAAATT i cavPor3.scaffold_248 I 269 C 0 s bosTau4.chr17 29908408 25 - 76506943 AATTCACCACATTTTCTCAAAAACT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64118165 25 - 94057673 AATTCATCACCTTTTCTACAAAACC i equCab2.chr8 I 289 C 0 s canFam2.chr26 3150396 25 + 42029645 AATTCATCACTTTTTCTCCAAAACT i canFam2.chr26 I 217 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=83210.000000 s hg19.chrUn_gl000223 21476 58 + 180455 GACCCTTTTTCTGTCTTTTGTTTCTC---TAGTACTATCTG---CATCCAAATTACCCAAGCCT s canFam2.chr26 3150421 56 + 42029645 GA-----TTCCTGTCTTTTATGTTTCTATTACTACTATCCC---TATGCAAATTATGTAGGCCC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64118190 61 - 94057673 AACCCTGTTCCCATCTCTTGTGTTTCTGTTACTATAATCCC---TATCCAAATTATCCAGGCCT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29908433 61 - 76506943 GACCCTTTTTCTGTCTTTTCTATTTCTGTTATTACTATCCC---TATTTCAATTACCCAGGTTT i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 641522 61 + 1032594 GACTCTCTTCTTGTCTTTTACCTTTC---TATTACTACTCTCCCTATCCAAATTATCCAAGCCA i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 192628 48 + 667635 GACCATTTTCTT----------TTTA---TTTTACTATTCT---TAGCCAAATTATCCACACCC i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 155021 54 - 134511895 GACCC-TTTTCTGTC---TGTTTCTC---TACTAAAATCTG---TATCCAAATTATCCAAGCCT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 180392 58 - 136387465 GACCCTTTTTCTGTCTTTTGTTTCTC---TACTACTATCTG---TATCCAAATTACCCAAGCCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 151874 58 - 135371336 GACCCTTTTTCTCTCTTTTGTTTCTC---TACTACTATCTG---TATCCAAATTACCCAAGCCT i panTro2.chr12 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=270973.000000 s hg19.chrUn_gl000223 21534 159 + 180455 AAAACGACAACTGGAAAT--TCCTTT--TTTCACTGCTGTACTGCTAATTTGAGGATATCTAATGCAAGCTATTTAGACACA---------TCACTAGGCCATGAATTCCTTGATAGTTATTACACTTT-TGCACACTCTCTAGTCTC----TGTAGC-----AC------------------TTAATAGAAAGTCTTGA s panTro2.chr12 151932 159 - 135371336 AAAACACCAACTGGAAAT--TCCTTT--TTTCACTGCTGTACTGCTAATTTGAGGATATCTAATGCAAGTTATTTAGACACA---------TCACTAGGCCATGAATTCCTTGATAGTTATTACACTTT-TGCACACCCTCTAGTCTC----TGTAGC-----AC------------------TTAATAGAAAGTCTTGA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 180450 159 - 136387465 AAAACACCAACTGGAAGT--TCCTTT--TTTCACTGCTGTACTGCTAATTTGAGGATATCTAATGCAAGTTATTTAGACACA---------TCACTAGGCCATGAATTCCTTGATAGTTATTACACTTT-TGCACACCCTCTAGTCTC----TGTAGC-----AC------------------TTAATAGAAAGTCTTGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155075 159 - 134511895 AAAACGCCAACTGGAAAT--TCCTTT--TTTCACTGCTGAACTGCTAATTTGAGGATATCTAATGCAAGTTATTTAGACACA---------TCACTAGGCCATGAATTCCTTGATAGTTATTACACTTT-TATACACCCTCTAGTCTC----TGTAGC-----AT------------------TTAATAGAGAGTCTTAA i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 192676 178 + 667635 AAAATACCAACTTAAAATAAATTTTTTCTCTCATTGCAAAACTACTAA--------TCTCTAACTTAAA----CTATACACACATTTTATCCCAC---ATCATAAATTCCTTGGTAGCTATTATAGTTTATTTATTACACTAAATGACTCAGTACAGT-----ATGTCAGTTAAGACTCTGTATTAAAAGAAAGTCTT-- i cavPor3.scaffold_248 C 0 I 113 s oryCun2.chrUn0106 641583 154 + 1032594 AAAACACCAACCGGAAAT--TCCTTTCCTCTCATTGTTGCACTGTTAATTTGAAG-TCTCTTATGCAAGTGATCTACAGTCATATTTTATCTCACTAGGTCATAAATTCCTTGATAGTTGATACAGTTT-TGTATACCCTCTGGTGTC----TGCAGC-----AT---------------------------------GA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29908494 137 - 76506943 TTAACACCAACTGGAAAT--TCCTTTCTTCTCATTGTTGAACTGCCAACTTGAGGACCTCTAACC-AAGTTATTTACAGACCCA--CTATCTCACTATGCC--------------------------------ATGCCTTCTACTCTC----TGAGGCATACTAC------------------CTAAAAGAAAGTC---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64118251 160 - 94057673 AAAACACCACTTGGAAAT--TCTTTTTTTCTCACTGCTGAACTGCCAACTC---------TAACA-AAATCATTTACAGACCCATTTTATCTCACTAGGCCATAACTTCCTTGACAGTTATTACACTTT-TGTATGACTTATAGTCTC----TATAGC-----AC------------------CTAATAAAAAGTCTTGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3150477 169 + 42029645 CAAACACCAACTGGAAAT--TCCTTCTCCCTTACTGCTGAACTGCAAATTTGGAGACATGCAATG-AAGTTATTTACAGATCTATTTTACCTCATTAAGCTGTAACTTCTTTGATAGTTATTACACTTT-TTTATACTTTCTACTCTC----TGTAGC-----AT------------------CCAAAAGAAAGTCTTTg i canFam2.chr26 C 0 I 187 s choHof1.scaffold_56076 7188 170 + 9564 AAAAACCCAGCTGGAAGT--ACCTTATCTCTAATTGCCAAACTGCCAATTTGAGGAAATCTAATGTAAGTTATTTTCAGATACACTTTACCTCACTAAGCAACAGATTCCTTGATACTCACTACACTTG-TGTCTGCTCTCTACTCTC----TGTAAC-----AC------------------CTAAGAGAACGTCTTGC i choHof1.scaffold_56076 N 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e turTru1.scaffold_114229 61735 7613 + 106394 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=-16684.000000 s hg19.chrUn_gl000223 21693 35 + 180455 GAAAGATTTGA--------------------------CAAGATTA---------------AAA---TTTCTGTAAATA---T s panTro2.chr12 152091 35 - 135371336 GAAAGATTTGA--------------------------CAAGATTA---------------AAA---TTTCTGTAAATA---T i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 180609 35 - 136387465 GAAAGATTTGA--------------------------CAAGATTA---------------AAA---TTTCTGTAAATA---T i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155234 30 - 134511895 GA-----TTGA--------------------------CAAGATTA---------------AAA---TTTCTGTAAATA---T i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 192967 37 + 667635 gaaagTCTTAA--------------------------CAAGATTT---------------CAA----TATGTTAAACAGTGG i cavPor3.scaffold_248 I 113 C 0 s oryCun2.chrUn0106 641737 22 + 1032594 TTAAATATT------------------------------------------------------------TGGTAAATATTGT i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_114229 69348 72 + 106394 gaaagatcccacatgcctcaacgaagatcccgcatgccaaaattaagacccaacacagccaaa-------aataaaCC---T i turTru1.scaffold_114229 I 7613 N 0 s bosTau4.chr17 29908631 24 - 76506943 -----------------TTAATG----------------AGatta---------------aaa-------aataaata---t i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64118411 27 - 94057673 -------------------------------------CGAGATTA---------------AAA---TTTCAATAAGTATTGT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3150833 26 + 42029645 --------------------------------------AAAAGGA---------------AAGTCTTTTAAATAAATA---C i canFam2.chr26 I 187 C 0 s choHof1.scaffold_56076 7358 24 + 9564 -------------------------------------CAAGATTA---------------AAA---TTTCAATAAATA---T i choHof1.scaffold_56076 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=98478.000000 s hg19.chrUn_gl000223 21728 151 + 180455 TAAGAGTGTATGTGAAGGAATAAAT--AAAT--ATCAATTAATCAAAGAG-----TAATGAATTAATCTTTTCAAGGT---GATTAAATAGAACAGCAAAATATGTACTTT-------TAATTTTTTTTTTCTTTCTCAGGTTGAATTC-AGGCAATAGAA--ATGTATGTCC s panTro2.chr12 152126 151 - 135371336 TAAGAGTGTATGTGAAGGAATAAAT--AAAT--ATCAATTAATCAAAGAG-----TAATGAATTAATCTTTTCAAGGT---GATTAAATAGAACAGCAAAATATGTACTTT-------TAAATTTTTTTTTCTTTCTCAGGTTGAATTC-AGGCAATAGAA--ATGTATGTCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 180644 151 - 136387465 TAAGAGTGTATGTGAAGGAATAAAT--AAAT--ATCAGTTAATCAAAGAG-----TAATGAGTTAATCTTTTCAAGGT---GATTAAATAGAACAGCAAAATATGTACTTT-------TAATTTTTTTTTTCTTTCTCAGGTTGAATTT-AGGCAATAGAA--ATATATGTCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155264 147 - 134511895 TAAGAGTGTATGTGAAGG----AAT--AAAT--ATCAGTTAATTAAAGAG-----TAATGAGCTAATCCTTTCCAGGT---GATTAAATAGAACAGCAATATATGTACTTT-------TTAATTTTTCTTTCTTTCTCAGGTTGGATTT-AGGCAATAGAA--ATATATGTCC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 193004 149 + 667635 TAGGAGACAATATGAATAAATGAAT-AGATT--ATCAACTACCCAAAAAAATGGGCAggggatgtagctcaatggtaaagtgcttgcctaaaa--------tatgtgaggccctgggttcaattcccactaccaccaAA-----------AAATAGCTGAA--GAATGAATTA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 641759 128 + 1032594 TAAGAGAATATATGAACAAATGAATAAAAAA--ATCAATTAGCCAAAGAA-----TAATGAATTAACCTTTCCAATCA---GATTAAATAAAA-------------------------ACAATACTACATACCTTTTTA-------TTT-AGACAAAAGAA--AACCGTACCA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29908655 133 - 76506943 --tgttaatatattaGTGAAGGAAT--AAACCCATTAATTAACCAAAGCC-----TAATGAA-----TCACTTAAGAG---GGT----TAGAACAGCAATATAAA-----G-------GAAAAAATATACACCTTTTAA-------CTTAAGACAATAAAAGCACATATGTCA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64118438 138 - 94057673 TAAGTGAATATATGAATGAATGAAT--GAAGCCATCAGTTAATCAAAGGG-----TATTGAATTAACCTTTCCAAGAT---GATTAAATAGAACAGCAATAT--------G-------AAAAAACAATATACCTTTTAA-------TTT-AGGGAATAGAA--ACATACATCA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3150859 121 + 42029645 CAAGAGAATGTGTGAGGGAATGAAT--AA----ATCAATTAAACAAAAAG-----TAGC-AACAAATTCATCTAAGAC---AGTTAAATAGGACCATAGT---------------------------TTTACCTTTCAA-------TTT-AGGCAACAGAA--ACACAGGTCA i canFam2.chr26 C 0 C 0 s choHof1.scaffold_56076 7382 103 + 9564 --------------------TAAAT--GAG---ATAAGTGAATCACTGAA-----CAAACCATC-----------------AATTTCCAAGAAAAGCAATATAAA-------------GAAATACTGGACATCTTTTTA-------TTT-AGGTAAAAGAT--ACATATACAA i choHof1.scaffold_56076 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e loxAfr3.scaffold_113 82579 805 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=68182.000000 s hg19.chrUn_gl000223 21879 55 + 180455 ATTTGAAGAAAGAAAGGAAAGAAAA----AACAAAAAG------AAATGAA-----ATTCAGAG----ACCAGA s panTro2.chr12 152277 55 - 135371336 ATTTGAAGAAAGAAAGGAAAGAAAA----AACAAAAAG------AAATGAA-----ATTCAGAG----ACCAGA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 180795 55 - 136387465 ATTTGAAGAAAGAAAGGAAAGAAAA----AACAAAAAG------AAATGAA-----ATTCAGAG----ACCAGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155411 55 - 134511895 ATTTGAAGAAAGAAAGGGAGGAAAA----AACAAAAAG------AAATGAA-----ATTCACAG----ACCAGA i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 193153 70 + 667635 ATCTTTCTAAGATAATTAAATGTAACACTACCACTGAGATTCataaataaatatatatatatgc----actgga i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 641887 49 + 1032594 ATTTGAAGAAAAGGATGAG----------ACCAAAGAG------AAATGAA-----ATCCAGAG----ACTGAA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29908788 57 - 76506943 ATTTTTgaa-agaaagagaagagaa----ataaagtga------gaaaaag-----gatgagaa-gagaactga i bosTau4.chr17 C 0 I 59 s equCab2.chr8 64118576 47 - 94057673 ATTTCAAGA--------AAGGAGAA----ATCAAAAAG------AAATGAG-----GTTCAGCAC----CCAGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3150980 49 + 42029645 ATTTCAAGATAGAAAGGGAGAAGAA----ATCAAAAAG------AAATGAA-----ACTCAGGg---------- i canFam2.chr26 C 0 I 244 s loxAfr3.scaffold_113 83384 48 - 3408981 ATTTGAATAAA-------AGGAGAA----CCAAAAAAG------AAATGGA-----ATTCAAAG----ACCAGA i loxAfr3.scaffold_113 I 805 C 0 s choHof1.scaffold_56076 7485 54 + 9564 AATAGAAGAAAGAAAGGGAGAAGAA----TCCAGAAAG------AAATGGA-----ATCCAGAG----ACCAG- i choHof1.scaffold_56076 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=-11094.000000 s hg19.chrUn_gl000223 21934 63 + 180455 CAGA------------------------------------ACTAA--CAATGGGAACAAAAAAGAC---ACCT----GTGAGAAAGAAAAGAAAGTATAAGGTGAGAA s panTro2.chr12 152332 60 - 135371336 CAGA------------------------------------ACTAA--CAATGGGAACAAAAAAGAC---ACCT----GTGAGAAAGAAGAGACAGTAT---GTGAGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 180850 63 - 136387465 CAGA------------------------------------ACTAA--CAATGGGAACAAAAAAGAC---ACCT----GTGAGAAAGTAGAGAAAGTATAAGGTAAGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155466 63 - 134511895 CAGA------------------------------------ACGAA--CAATGACAACAAAAAAGAT---ACCT----GTGAGAAAGTAGAGGAAGTATAAAGTGAGAA i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 193223 95 + 667635 aacatacatatacatacacatgtatatgtacTAGGAACACGCCAATGTGAAGGAAAAAAAAACATA---ACAT----GGG-----GCAGAGACA-TAACAGGATGTAT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 641936 30 + 1032594 CAGA------------------------------------GCTAA--CGATGGAAAGAA----------------------------------------AGGAGACAA i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3151273 66 + 42029645 CAGA------------------------------------GCTAA--CAATGGAAAAAAAGAACAC---ATCTGTTAGTGAGAAAGTGTACAAAGG-TAAGATGAGAA i canFam2.chr26 I 244 C 0 s equCab2.chr8 64118623 55 - 94057673 CAGA------------------------------------GCTAA--CAATGCAAAGAAAGGACAC---ATCTGTCTGTGAGAAAGTGGGGAAAGG------------ i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 83432 54 - 3408981 -----------------------------------------------CAGAGGGAAGAAAGAAGGACAAATCT---ATTCAGACTGGTAAGTAGGTGTGAAGTG---- i loxAfr3.scaffold_113 C 0 I 40 s choHof1.scaffold_56076 7539 23 + 9564 -----------------------------------------------CAGAAGGAAGTAAGAGGCA--------------------------------------GGAG i choHof1.scaffold_56076 C 0 I 81 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29908845 59 - 76506943 I a score=21605.000000 s hg19.chrUn_gl000223 21997 94 + 180455 CTGGTCGACTATGTCAGCTGTTAGGTAATATAG--AAAAAAC----AGAATTGGGTATGAAGTAGTGTTTTATGGAGTTGTAAGTGAAACTTCAGTCTTT s panTro2.chr12 152392 94 - 135371336 CTGGTCGAGTATGTCAGCTGTTACGTAATATAG--AAAAAAC----AGAATTGGGTATGAAGTAGTCTTTTATGGAGTTGTAAGTGAAACTTCAGTCTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 180913 94 - 136387465 CTGGTCGAGTATGTCAGCTGTTAGGTAATATAG--AAAAAAC----AGAATTGGGTATGAAGTAGTCTTTTATGGAGTTGTAAGTGAAACTTCAGTCTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155529 98 - 134511895 CTGGTTGAGTATGTTAGCTGTTACGTAATATAG--AAAAAACAAAGAGAACTGGGTATGAAGTAGTCCTTTATGGAGTTGTAAGTGAAACTTCAGTCTTT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 193318 84 + 667635 CTA-------------TTTGTGTAAAAGTGGGGGCAAAATAT---AAGAACCGGGTATGACATTGTCCCTTGTGGAGCTATACTCAAGACTTCATAGTTT i cavPor3.scaffold_248 C 0 I 2 s oryCun2.chrUn0106 641966 45 + 1032594 CTG-------------TCTGTGAGAAAGTGGGG--AACATAC---GAGCATTGGGTATGAAGT------------------------------------- i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3151339 61 + 42029645 TTG-----------------------AAGATGGCTGGAAAGC----AGA------TGTGAAATAGTTTCTTCTGAGGCTGTGAGCAAGACTTCA------ i canFam2.chr26 C 0 I 8 s equCab2.chr8 64118678 3 - 94057673 -------------------------------------------------------------ATA------------------------------------ i equCab2.chr8 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 33175 2621 - 269436 I e loxAfr3.scaffold_113 83486 40 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e choHof1.scaffold_56076 7562 81 + 9564 I e bosTau4.chr17 29908845 59 - 76506943 I a score=14723.000000 s hg19.chrUn_gl000223 22091 35 + 180455 ATACCTCTGGTATC-ttttttttttttttgagatgg s rheMac2.chr11 155627 31 - 134511895 ATATCTCTGGTAtt-----ttttttttttgagacac i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 181007 35 - 136387465 ATACCTCTGGTATC-ttttttttttttttgagatgg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 152486 36 - 135371336 ATACCTCTGGTATCtttttttttttttttgagatgg i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_85885.1-99880 84859 35 + 99880 ACCttttttttttt-ttttttttttttttgagacag i otoGar1.scaffold_85885.1-99880 n 2621 C 0 s equCab2.chr8 64118681 6 - 94057673 ------------------------------AGATGA i equCab2.chr8 C 0 C 0 e oryCun2.chrUn0106 642011 0 + 1032594 C e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 83486 40 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e choHof1.scaffold_56076 7562 81 + 9564 I e cavPor3.scaffold_248 193402 2 + 667635 I e bosTau4.chr17 29908845 59 - 76506943 I e canFam2.chr26 3151400 8 + 42029645 I a score=31757.000000 s hg19.chrUn_gl000223 22126 56 + 180455 agtcttgctctgtctcccaggctgcagtgcagtggcgcaatctcgactcactgcaa s rheMac2.chr11 155658 55 - 134511895 agtctcgctctgtcgcccaggctggagt-cagtggcgcaatcttggctcaccacaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 181042 56 - 136387465 agtcttgctctgtcgcccaggctgcagtgcagtggcgcgatctcgactcactgcaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 152522 56 - 135371336 agtcttgctctgtcgcccaggctgcagtgcagtggcgcaatctcgactcactgcaa i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_85885.1-99880 84894 53 + 99880 agcctgaagctgtccctctgggtagagtgctgtggc---attacagctcacagcaa i otoGar1.scaffold_85885.1-99880 C 0 C 0 s oryCun2.chrUn0106 642011 40 + 1032594 -----------GTCCCTTATGCAGCTGTG----GGTGAGAACT-GAGTCTCTACAA i oryCun2.chrUn0106 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 83486 40 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e choHof1.scaffold_56076 7562 81 + 9564 I e cavPor3.scaffold_248 193402 2 + 667635 I e bosTau4.chr17 29908845 59 - 76506943 I e equCab2.chr8 64118687 0 - 94057673 C e canFam2.chr26 3151400 8 + 42029645 I a score=38785.000000 s hg19.chrUn_gl000223 22182 53 + 180455 gctctgcctcccgggttcacgccatgctcctgcctcagcctcccaagtagctg s otoGar1.scaffold_85885.1-99880 84947 51 + 99880 cctccatct--tgggctcaagcaagtctcctgcctccgtctcccaagtagttg i otoGar1.scaffold_85885.1-99880 C 0 C 0 s panTro2.chr12 152578 53 - 135371336 gctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181098 53 - 136387465 gctctgcctcccgggttcatgccattctcctgcctcagcctcccaagtagctg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155713 53 - 134511895 gctctgtctcccgggttcacaccattctcctgcctcagcctcccaagtagctg i rheMac2.chr11 C 0 C 0 e oryCun2.chrUn0106 642051 0 + 1032594 C e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 83486 40 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e choHof1.scaffold_56076 7562 81 + 9564 I e cavPor3.scaffold_248 193402 2 + 667635 I e bosTau4.chr17 29908845 59 - 76506943 I e equCab2.chr8 64118687 0 - 94057673 C e canFam2.chr26 3151400 8 + 42029645 I a score=22443.000000 s hg19.chrUn_gl000223 22235 44 + 180455 ggactacaggcacccgccaccaagcccggcaaatttttttgtat s rheMac2.chr11 155766 42 - 134511895 ggactacaggcg-ccgccaccgcacccggctaa-ttttttgtat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 181151 44 - 136387465 ggactacagacacccgccaccatggccggcaaatttttttgtat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 152631 44 - 135371336 ggactacaggcacccgccaccacgccaggcaaatttttttgtat i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_85885.1-99880 84998 38 + 99880 ggaccacaggcacccgccacaatgcctggctatttttt------ i otoGar1.scaffold_85885.1-99880 C 0 I 77 s equCab2.chr8 64118687 23 - 94057673 GAACTGAAGGCA-----------GACTGGCAAGT---------- i equCab2.chr8 C 0 C 0 e oryCun2.chrUn0106 642051 0 + 1032594 C e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 83486 40 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e choHof1.scaffold_56076 7562 81 + 9564 I e cavPor3.scaffold_248 193402 2 + 667635 I e bosTau4.chr17 29908845 59 - 76506943 I e canFam2.chr26 3151400 8 + 42029645 I a score=41720.000000 s hg19.chrUn_gl000223 22279 94 + 180455 ttttagcagagatggggtgtcaccgtgttagccaggatggtctcgatctcctgacgtcgtgatccacccacctcggcctcccaaagtgctggga s panTro2.chr12 152675 94 - 135371336 ttttagcagagatggggtgtcaccgtgttagccaggatggtctcgatctcctgacgtcgtgatccacccacctcggcctcccaaagtgctggga i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181195 94 - 136387465 ttttagtagagatggggtgtcaccgtgttagccaggacggtcttgatctcctgatgtcgtgatccacccacctcggcctcccaaagtgctggga i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155808 94 - 134511895 ttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacctgccctggcctcccaaagtgctggga i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64118710 29 - 94057673 --------------GGGTGT-------------AAAGTGGTC-------------------------------------CCTTAGGAGCTGTG- i equCab2.chr8 C 0 C 0 e oryCun2.chrUn0106 642051 0 + 1032594 C e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_85885.1-99880 85036 77 + 99880 I e loxAfr3.scaffold_113 83486 40 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e choHof1.scaffold_56076 7562 81 + 9564 I e cavPor3.scaffold_248 193402 2 + 667635 I e bosTau4.chr17 29908845 59 - 76506943 I e canFam2.chr26 3151400 8 + 42029645 I a score=-4617.000000 s hg19.chrUn_gl000223 22373 62 + 180455 ---------ttaccggcatgagccacc---gtgcctagcGTATCTCTAGTATCTTTA-AGGGAAAATTTTCCAAT s equCab2.chr8 64118739 55 - 94057673 GGCAAGACTTCACAGTC------------------TCT-GTATCTCTAGCATCTTTA-AGGGAAAACTTTCCAAC i equCab2.chr8 C 0 C 0 s dipOrd1.scaffold_6752 24454 49 + 58727 ------------------TGAGCCACC----TTCCCAGC---CCTCTCATTTCTTTATAGGAGACACTTCAAAG- i dipOrd1.scaffold_6752 N 0 N 0 s rheMac2.chr11 155902 62 - 134511895 ---------ttacaggtgtgagccacc---gcgcccggACTATCTCTGGTATCTTTA-AGGGAAAATTTTCCAAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 181289 62 - 136387465 ---------ttacaggcgtgagccacc---acgcccggcGTATCTCTGGTATCTTTA-AGGGAAAATTTTCCAAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 152769 62 - 135371336 ---------ttacaagcgtaagccact---gcgcctagcGTATCTCTGGTATCTTTA-AGGGAAAATTTTCCAAT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_85885.1-99880 85113 29 + 99880 ---------ttagccacttgagccacAG--GTGCTGAGCC----------------------------------- i otoGar1.scaffold_85885.1-99880 I 77 n 77 s oryCun2.chrUn0106 642051 31 + 1032594 -------------------------------------------CACTGACATCTTTA-AGGGAAGAATTTGCAAC i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 193404 35 + 667635 ---------------------------------------GTATCTCTCCTATCTTTA-AGGGAACATTTTCCAAC i cavPor3.scaffold_248 I 2 C 0 s canFam2.chr26 3151408 33 + 42029645 ---------------------------------------AATGCTCTGGTATCTGTA-AGGGAAAA--TTATAAC i canFam2.chr26 I 8 C 0 s bosTau4.chr17 29908904 41 - 76506943 ---------------------------------CCTCCCGTATCTCTGGTACCTTTC-AAGGAAAACTTTCTATC i bosTau4.chr17 I 59 C 0 s sorAra1.scaffold_235026 4381 33 + 56848 ----------------------------------------TACTTTCAGTATCCTTA-AAGAGAAACTTTCTAC- i sorAra1.scaffold_235026 N 0 C 0 s loxAfr3.scaffold_113 83526 36 - 3408981 --------------------------------------CACATTTCTGGTATCTTTA-AGGGAAAACTTTTCAGC i loxAfr3.scaffold_113 I 40 C 0 s choHof1.scaffold_56076 7643 49 + 9564 ----------------------CCACAGTC---TCCATGGTTTTCAAGGTATTTTTA-AGGGAAAACCTTTTAAC i choHof1.scaffold_56076 I 81 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=115873.000000 s hg19.chrUn_gl000223 22435 66 + 180455 CAACATAT-TAAAAAGTATTCCTTTTTCATTGACTAATTGAGTGGT---TTTAAAAAATTT-------CCCCA-TCAG s panTro2.chr12 152831 66 - 135371336 CAGCATAT-TAAAAAGTATTCCTTTTTCATTGACTAATTGAGTGGT---TTTAAAAAATTT-------CCCCA-TCAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181351 66 - 136387465 CAACATAT-TAAAAAGTATTCCTTTCTCATTGACTAATTGAGTGGT---TTTAAAAAATTT-------CCCCA-TCAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 155964 66 - 134511895 CAACATAT-TAAAAAGTATTCCTTTCTCATTGACTAGTTGAGTGGT---TTTAAAAAATTT-------TCCCA-TCAG i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 193439 67 + 667635 TAGTGTAT-TAAAAAGTAGAGCTTTCTCATTGACTAGTTGGGTTGTTA-TTTTTAAAACTT-------CCCCT-CCA- i cavPor3.scaffold_248 C 0 I 196 s oryCun2.chrUn0106 642082 68 + 1032594 CAACATAG-TAAAAACCATTGCTTTCTCACTAACTAGTT-GGTTATTA-TTTTAAAATTTC-------CCCCTACCAG i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3151441 46 + 42029645 CAAAATAT--AAAAAGTATTGCTTTCTTATTGATTAGTTGGGTTGTTA------------------------------ i canFam2.chr26 C 0 C 0 s equCab2.chr8 64118794 64 - 94057673 CAACATAT-AAAAAAATATTGCTTTCTCATTGACTAGTTGTTATTTTA-----AAAATCTT-------CCCCA-CCAG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29908945 70 - 76506943 CAACATATAAAAAAAGTACTGCTTTCTCACTGACTGGTTGGGTTGTTATTTTAAAAAACTT-------CATTA-CCAG i bosTau4.chr17 C 0 C 0 s sorAra1.scaffold_235026 4414 44 + 56848 --ACATAT-ATACAAGT-TTGCTTTCTCACTAACTAGCATGGTCATTA------------------------------ i sorAra1.scaffold_235026 C 0 C 0 s choHof1.scaffold_56076 7692 76 + 9564 AAACATAC-AGAAAAGAACTGCTTTCTCTTTGACTCATCGGGTTGTTATTTTAAGAAAATTGCCCCCCCCCCC-CCAG i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83562 57 - 3408981 CAACATAT--TCAAAGTGTTGCTTTCTCATTGACTAGCTGGGTTGTGATATT----------------CTCCT-CC-- i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_85885.1-99880 85142 77 + 99880 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=460207.000000 s hg19.chrUn_gl000223 22501 98 + 180455 CTTCCAACTCACTCACCTGAAAACAGATCTCTTTTCACTTCCCTTTTCCCCAGCCAGGGTTCTTTCCCTTGCTCCAATAAGGAAACCACATCTGGCTT s panTro2.chr12 152897 98 - 135371336 CTTCCAACTCACTCACCTGAAAACAGATCTCTTTTCACTTCCCTTTTCCCCAGCCAGGGTTCTTTCCCTTGCTCCAATAAGGAAACCACATCTGGCTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181417 98 - 136387465 CTTCCAACTCACTTACCTGAAAACAGATCTCTTTTCACTTCCCTTTTCCCCAGCCAGGGTTCTTTCCCTTGCTCCAGTAAGGAAACCACATCTGGCTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 156030 98 - 134511895 CTTCCAACTCACTCACCTGAAAACAGGTCTCTGTTCACATTCCTTTTCCCCAGCCAGGGTTCTTTCCCTTGCTCCAATAAGGAAACCACATCTGGCTT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 193702 98 + 667635 CTATCACCTAACTCATCTGAAAAGTGATCTCTGTTCATTTCTCCTTTCCCCAGCCAGGGCTCTTTGCCTTGTTCCAACAAGGAAACAACATCTGGCTT i cavPor3.scaffold_248 I 196 C 0 s oryCun2.chrUn0106 642150 98 + 1032594 CTTCTAACTCACTCACCTGAAAAAAGATTTCTTCTTATATCTCCTTTGCCCAGCCACGGCTCTTTCCCTTGCTCCAATAGGGAAACCAAATCTGGCTT i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3151487 95 + 42029645 ---CTAACTTACTCACCTGAAAACAGATCTCTTCTCACATCTCCTTTCTCCAGCCAGGGCCCTTTTCCTTGCTCCAATAAGGAAACCACATAAGGCTT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64118858 98 - 94057673 CATCTAACTCACTCACCTGAAAAGAGATCTCTTCTCACATCTCCATTCCCCAACCAAGGCTCTTTCCCTTGCTCCAATAAGGAAACCACATCTGGCTT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29909015 98 - 76506943 CTTCTCACTCACTCACCTGGAAACAGCTCTCTGCTTACATCTCCATTCCCCAGCCAGGGCTCTTTCCCTTGTTCCAATAAGGAAACCACATCTGGCTT i bosTau4.chr17 C 0 C 0 s sorAra1.scaffold_235026 4458 96 + 56848 --TTTGAATCATTCACCTGAAAACAGATCTCTTCTCACATCTCCTTTCCCCATCCAGGGCTCTTTTCCTTGCTCCAATAAGGAAACCACATCTGGCTT i sorAra1.scaffold_235026 C 0 C 0 s choHof1.scaffold_56076 7768 98 + 9564 CATGTAACTCACTTACCCGAGGAGAGGTCTTTTTCCACGTCTACTTTCCCCATCCACGGCTCTTTCCCTTGCTCCAATAAGGAAACCACATCTGGCTT i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83619 94 - 3408981 ----TAACTGACTCACCTGAAAATAGATCTCTGCTCACATCTCCTTTCCTCAGCCAAGGCTCTTTCCCTTGCTCCAATAAGGAAACCACATCAGGCTT i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_85885.1-99880 85142 77 + 99880 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=296643.000000 s hg19.chrUn_gl000223 22599 77 + 180455 AGAAATGGAAAGACCTGCTTGCAG-AAAATGAAATA-AATTCAAGATCAGTCATTGAA-TCCTAAG------AG-----GGGCCACAAAGG s panTro2.chr12 152995 77 - 135371336 AGAAATGGAAAGACCTGCTTGCAG-AAAATGAAATA-AATTCAAGATCAGTCATTGAA-TCCTAAG------AG-----GTGCCACAAAGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181515 77 - 136387465 AGAAATGGAAAGACCTGCTTGCAG-AAAATGAAATA-AATTCAAGATCAGTCATTGAA-TCCTAAG------AG-----GGGCCCCAAAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 156128 77 - 134511895 AGAAATGGAAAGACCTGCTTGCAG-AAAATGAAATA-AATTCAAAATCAGTTGTTGAA-TCCTAAC------AA-----GGGCCACAAAAG i rheMac2.chr11 C 0 C 0 s dipOrd1.scaffold_89462 0 78 + 2931 AGAAATGCAGAGACCTGCTTACAA-GAAATGAAAAAGAGTTCAAAATCAGTCTTTAAA-TCCTAAG------AA-----AGGCTATTAAAA i dipOrd1.scaffold_89462 N 0 I 1 s cavPor3.scaffold_248 193800 82 + 667635 AGAAATGGAAAGACCTGCTTGCAG-AAAATGAAATA-AATTCAAAATCAGTCCTTAAA-TTATAAG------AAAAGAGAGGCCATTAAAA i cavPor3.scaffold_248 C 0 I 115 s oryCun2.chrUn0106 642248 73 + 1032594 AGAAATGGAAAGACCTGCTTACAG-AAAATGAAATG-AATTCAACATCAGTCATTAAA-TCCTAAA------TG-----AAGTTACA---- i oryCun2.chrUn0106 C 0 I 417 s canFam2.chr26 3151582 79 + 42029645 AGAAATGTTAAGACCTGCTTGCAG-AAAATGAAATA-AATTCCAAATCAGTCCTTCAG-TCCCTAG----AAGA-----GAGCCATTAAAA i canFam2.chr26 C 0 I 441 s equCab2.chr8 64118956 81 - 94057673 AGAAACGTTAAGACCTGCTTACAG-AAAATGAAATA-AATTCAAAATCAGTCCTTAAA-TCCTCAG--AAAAGG-----GGGCCATTAAAA i equCab2.chr8 C 0 I 1 s bosTau4.chr17 29909113 83 - 76506943 AGACATGTTAAGACCTGCTTGTGG-AAAATGAAATA-CATTCAAAATTAGTCCTTGAA-TCCTTACCAAAAAAG-----AGGCCATTATTA i bosTau4.chr17 C 0 I 1 s sorAra1.scaffold_235026 4554 80 + 56848 AGAAATGTTAAGACCTGTttgcagaaaaatgaaata-aattcaaaatttattcttGAATTCCTCAG----AAAA-----GGGCC-TTATGA i sorAra1.scaffold_235026 C 0 I 1 s choHof1.scaffold_56076 7866 76 + 9564 CGAAATGGAAAGGCCTGTTCACAG-AAAAGGAAATA-AATTCAACATCAATC--TGAA-TTCTCAG-AAAAGAA-----GGG--AGTAA-- i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83713 81 - 3408981 AGAAATGGAAAGACCTGCTTACAG-AAAATGAAAAA-AATTCAAAATAGTCC-TTGAA-TCCTCAG-AAAAGAG-----GGGCCATTAAAA i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_85885.1-99880 85142 77 + 99880 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=109675.000000 s hg19.chrUn_gl000223 22676 60 + 180455 AAATGTCAGATGTAAGTTTTTAAAATG---TCTAAAAATAAGGTGCAGTTACGTCC-CCATCTT- s panTro2.chr12 153072 60 - 135371336 AAATGTCAGATGTAAGTTTTTAAAATG---TCTAAAAATAAAGTGCAGTTACGTCC-CCATCTT- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181592 60 - 136387465 AAATGTCAGATGTAAGTTTTTAAAATG---TCTAAAAATAAGGTGCAGTTACATCC-CCATCTT- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 156205 60 - 134511895 AAATGTCAGATGGAAGTTTTTAAAATG---TCTAAAAATAAGGTACACTTACGTCC-CCATCTT- i rheMac2.chr11 C 0 C 0 s dipOrd1.scaffold_89462 79 42 + 2931 AAATGACAAGTAGAAGTACGAAAAATC---CCCAAAGATTAATT-----------C--------- i dipOrd1.scaffold_89462 I 1 I 482 s cavPor3.scaffold_248 193997 53 + 667635 AAATGTTAGATGGAAGTATGAAGAATA---TCTGGACATTAGCTAAAGTTGCAACC--------- i cavPor3.scaffold_248 I 115 I 8 s equCab2.chr8 64119038 61 - 94057673 AAATGCCAGATGTAAGTATGAAAGATG---TCTAAAGATCAGGTGAAGTTGTAATCTACATCTT- i equCab2.chr8 I 1 I 1 s bosTau4.chr17 29909197 61 - 76506943 AAATGCCAGATATAAATATGAAAGATG---TCAAAACACTAGTTGAAGTTATAATCTTCCTCTT- i bosTau4.chr17 I 1 I 7 s sorAra1.scaffold_235026 4635 61 + 56848 gaatgtgaaatataaatatgaaagata---ttttaagatTGAGTGAAATTATAATCACCATCTT- i sorAra1.scaffold_235026 I 1 I 1 s choHof1.scaffold_56076 7942 58 + 9564 -------AGACATAAGTAGGAAAGATGGGCTCTAAAGATTAGGTGAAGTTACAGTCCCCATATAT i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83794 62 - 3408981 AAAAATCAGATGTAAGTATGGAAGATG---TTTAAAGATCAGGTGAAGCTACAATCCTCATCTTA i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 642321 417 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_85885.1-99880 85142 77 + 99880 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e canFam2.chr26 3151661 441 + 42029645 I a score=-47848.000000 s hg19.chrUn_gl000223 22736 23 + 180455 AAAACTAA--TTTTAAG----------------------AAACCCCA s otoGar1.scaffold_7340.1-269436 35796 25 - 269436 AAACCTAAATTTTTTAA----------------------AATTTCCT i otoGar1.scaffold_7340.1-269436 I 2621 C 0 s panTro2.chr12 153132 23 - 135371336 AAAACTAA--TTTTAAG----------------------AAACCCCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181652 23 - 136387465 AAAACTAA--TTTTAAG----------------------AAACCCCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 156265 20 - 134511895 ---ACTAA--TTTTAAG----------------------AAACCCCA i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 12245 18 + 22537 AAAACAAC-------AA----------------------AAAACCCC i tupBel1.scaffold_132008.1-22537 N 0 C 0 s cavPor3.scaffold_248 194058 20 + 667635 -AAAACAT--TTTTAAA------------------------AAGCCA i cavPor3.scaffold_248 I 8 C 0 s bosTau4.chr17 29909265 14 - 76506943 AAAA----------AAA-------------------AACAAAA---- i bosTau4.chr17 I 7 I 7 s equCab2.chr8 64119100 18 - 94057673 AAAACTAA------AAA-------------------AACAAAA---- i equCab2.chr8 I 1 I 6 s canFam2.chr26 3152102 19 + 42029645 AAAACTAA-----CAAA-------------------AAGAAAA---- i canFam2.chr26 I 441 I 7 s sorAra1.scaffold_235026 4697 38 + 56848 AGAACTAC-----TAGATTACTATCTAGTAGTACTCAGtgaga---- i sorAra1.scaffold_235026 I 1 I 162 s dipOrd1.scaffold_89462 603 8 + 2931 ---------------------------------------gaaaTTCA i dipOrd1.scaffold_89462 I 482 C 0 s choHof1.scaffold_56076 8000 36 + 9564 AAAACTAA------AAA----TAATTTTAAACACAAAACAAAACCA- i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83856 18 - 3408981 AAAACTAA------TAA----------------------AAAACCA- i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 642321 417 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=127712.000000 s hg19.chrUn_gl000223 22759 39 + 180455 TACCTCTCTTGGGAATATTCAGCCAGATAA--------TTATAACAG s otoGar1.scaffold_7340.1-269436 35821 35 - 269436 TATCT------------TCCAGCCAGATAATTAAAGATTTACAATAG i otoGar1.scaffold_7340.1-269436 C 0 C 0 s panTro2.chr12 153155 39 - 135371336 TACCTCTCTTGGGAATATTCAGCCAGATAA--------TTATAACAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181675 39 - 136387465 TACTTCTCTTGGGAATATTCAGCCAGATAA--------TTATAACAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 156285 39 - 134511895 TACCTATCTTGGGAATATTCAGCCAGATAA--------TTGTAACAG i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 12263 46 + 22537 TACTTCCCTTGGGAATATTCAGCCACATCA-TCAAAACTTACAACTA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_89462 611 37 + 2931 TATATCCTTTGTAAATGTTCAGCCAGATAA-TCAAGAC--------- i dipOrd1.scaffold_89462 C 0 I 367 s cavPor3.scaffold_248 194078 46 + 667635 TACCTCCCTTATGTCTGTTCAACCAGACAA-TCAAACTTTTCAACAA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29909286 45 - 76506943 T-CCTTCCTTGGGAATATTCAGTCAGATAA-TCAAGATTCACAACAG i bosTau4.chr17 I 7 C 0 s equCab2.chr8 64119124 43 - 94057673 ---CTCCCTTGGGAATATTCAGCCTGATAA-TCAAGATTCACAACAG i equCab2.chr8 I 6 C 0 s canFam2.chr26 3152128 44 + 42029645 --ACTTCCTTGGGAATCTCCAATCAGAAAA-CCAAGATTCACAACAG i canFam2.chr26 I 7 C 0 s sorAra1.scaffold_235026 4897 46 + 56848 taACTGCCTTGGTAATATTAAATGAGATCA-TTAAGATTCACAATAA i sorAra1.scaffold_235026 I 162 C 0 s choHof1.scaffold_56076 8036 42 + 9564 TACCTGCCTTGAGCATCTTCAGCCAGAGAG-----GATTCCCAGCAG i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83874 39 - 3408981 TACCTTCCTTGGGAAAATTCAGCCAGATAA-----GATTC---ACAA i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 642321 417 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=1462406.000000 s hg19.chrUn_gl000223 22798 220 + 180455 CCACCCTAACGGTCAAATTTTGCCTTGAGGGAGATGAAGAAGAATACTTACCCAGTGAGACCAGATGGCCATAGTTCTCCAACATTACACATCTGTACAAATCTCTTTGAGCAGGCTGAAGCCATTTCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAATGTCACTGACCCCTGAAATGACGGACAGATATTTGCATGACCAGCAC---------GCATG-CC s otoGar1.scaffold_7340.1-269436 35856 220 - 269436 CCATTCTAACAATCAAATTCTGACTTGAAGAACATGAGGAACAATACTTACCCAGTGAGACCAGATGGCCATAGTTCTCCAACATTACACATCTATACAAATCTCTCTGTGCAGGCTGAAGCCATTTCCATTCCTCCTGGGAAAAGTCTATGGCTACATCTCTGAAAGTCACTGGCCCCTGAAATGACAAATAGATATCTGCACAACTAGCAC---------CTATG-CC i otoGar1.scaffold_7340.1-269436 C 0 C 0 s panTro2.chr12 153194 220 - 135371336 CCACCCTAACGGTCAAATTTTGCCTTGAGGGAGATGAAGAAGAATACTTACCCAGTGAGACCAGATGGCCATAGTTCTCCAACATCACACATCTGTACAAATCTCTTTGAGCAGGCTGAAGCCATTTCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAATGTCACTGACCCCTGAAATGACGGACAGATATTTGCATGACCAGCAC---------GCATG-CC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 181714 220 - 136387465 CCACTGTAACGGTCAAATTTTGACTTGAGGGAGATGAAGAAGACTACTTACCCAGTGAGACCAGATGGCCATAGTTCTCCAACATTACACATCTGTACAAATCTCTTTGAGCAGGCTGAAGCCATTTCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAATGTCACTAACCCCTGAAATGACAGACAGATATTTGCATGACCAGCAC---------ACATG-CC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 156324 220 - 134511895 CCACCCTAAAGGTCAAATTTTGACTTGAGGGAGATGAAGAGGAATAATTACCCAGTGAGACCAGATGGCCATAGTTCTCCAACATTACACATCGGTACAGATCTCTCTGAGCAGGCTGAAGCCATTTCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAATGTCACTGACCCCTGAAATGACACACAGATATCTGCATGACCAGGAC---------CCATG-CT i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 12309 219 + 22537 CAATCGTATAGACCAAATTCTGACTTGAAGGACATGA-GCAGAATACTTACCCAGTGAGACCAGGTGGTTATAGTTCTCCAACATTACGCATCTGTACAAGTCCCTGTGAGCAGGCTGAAGCCATTCCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTTTAAATGTCACTGAGTCCTGAAATGGCACACAGATATCTATACGACCAGCAC---------TCACA-CT i tupBel1.scaffold_132008.1-22537 C 0 I 138 s cavPor3.scaffold_248 194124 219 + 667635 CTGTTCTAAAGATAAAATTATATCTTGAAGGAAATGAGGAGGACTACTTACCCAGTGAAACCAGATGACCATAGTTCTCTAACATTACACATTTATACAAATCTCTCTGAGCAGGCTGCAGCCATTTCCACTCCTCCTGGGAGAAGTCTATGGCTACATCTCTGTATGTCACTGATCCCTGCAATTACATACAGATATGTGTATAAATAGCAT---------CCATG-C- i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_89462 1015 216 + 2931 CCATACTAAGGCTCTAATTATGACTTGAAGGAGATGAGGAA---TACTTACCCAGTGAAACCAGATGGCCATAATTTTCCAGCATCACACATCTGTACAAGTCTCTCTGAGCAGGCTGAAGCCATTTCCACTCCTCCTGGGAGAAATCTATGGCCACATCTCTGAATGTCACTGAACCCTGAAATAACACACAGGCATCTGTACAACCAGTCC---------CCATG-C- i dipOrd1.scaffold_89462 I 367 C 0 s oryCun2.chrUn0106 642738 194 + 1032594 --------------------------aaaaaaAAGAAAGAGGAATACTTACCCAGCGAAACCAGATGGCCATAGTTCTCCAACATCACACATCTGTACAGATCTCTTTGGGCAGGTTGAAGCCATTTCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAATGTCACTGACCTCTGAAATGACAAACATATATCTATACAACCAGCAC---------CCTTGCC- i oryCun2.chrUn0106 I 417 C 0 s bosTau4.chr17 29909331 220 - 76506943 TCATCCTAAAGGTCAAGTTCTGCATGAGAGGAGATGAGAGGAAATACCTACCCAGTGACACCAGGTGGCCATAGTTCTCCAACATTACATGTCTGTACAAATCTCTCTGAGCAGGCTGGAGCCATTCCCACTCCTCCCGGGAGAAGTCTATGGACACATCTCTGAATGTCACTGACTCCTGAAATGACATACATACATCTGTACAACCAGCAT---------CTATG-CT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119167 214 - 94057673 CCACCCTAAGGGTCAGATTCTGACTGAGGGGAGATGAG------TACTTACCCAGGGAGACCAGGTGGCCGTAGTTCTCCAGCATGACAATCCTGTACAGATCTCTCTGAGCAGGCTGAAGCCACTCCCACTCCTCCCGGGAGAAGTCTATGGCCACATCTCCGAATGTCACCGACCCCTGAGAGAACATGCAGACATCCGCACAACCAGCAC---------CCGCG-CT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152172 217 + 42029645 CCACCCCAAAGTTCAAATTCTGACTGAGAGGAGGAGAAAT---CCACTTACCCAGTGAAACAAGGTGGCTATAGTTCTCCAACATTACATGTCTGTACAGATCCCTCTGAGCAGGCTGAAGCCACTCCCACTCCTCCTGGGAGAAGTCAATGGCCACATCTCTGAATGTCACTGACTCCTGAAATGACATAAAGATACCTGCACAACCAACAC---------CCACT-TG i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_235026 4943 216 + 56848 TCATCATAAAAGACAAGTTCTAACTTAGAAAAGATGAGGA---ATACTTACCTAGTGAGACCAAATGGTCATAGTTCTCCAACATTACATGTCTGTACAAATCTCTCTGAGCTGGCTGAAGCCATCCCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAAAGTCAGTGATTCCTGAAACAATATAAAGGTAACTGC-CAAACATTGC---------CCATG-TT i sorAra1.scaffold_235026 C 0 C 0 s choHof1.scaffold_56076 8078 228 + 9564 CTACCCTAAAAGGCAAAGTCTGACCTGGGGGAGATGA-AGGGACGACTTACCCAGGGTGACCAGGTGGCCATAGGTCTCCAACGTCACACACCTGTACAGATCCCTCTGAGCAGGATGAAGCCATGCCCACTCCTCCTGGGAGAAGTCTATAGCCACGTCTCGGAATGTCACTGACCCCTGAAATGACATGCAGACATCTGCACCACCAGGACGCCAAGGGGCCATG-TC i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 83913 220 - 3408981 CCACCCTAAAGTGAAAATTCTGACTTGGGGGAGATTAGAGGTAATACTTACCCAGTGAGACCAGGTGGCCATAGTTCTCCAACATTACACATCTGTACAAATCCCTCTGAGCAGGCTGAAGCCATTCCCACTCCTCCTGGGAGAAGTCTATGGCCACATCTCTGAATGTCACTGACCCCTGAAATGACATACAGATATCTCCACAACTAGTAC---------CCATG-TT i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=-20903.000000 s hg19.chrUn_gl000223 23018 10 + 180455 C----------------------------------------------------------------------------------------CC-AAACTCC s rheMac2.chr11 156544 10 - 134511895 C----------------------------------------------------------------------------------------CC-AAACTCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 181934 10 - 136387465 C----------------------------------------------------------------------------------------AC-AAACTCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 153414 10 - 135371336 C----------------------------------------------------------------------------------------CC-GAACTCC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 36076 98 - 269436 TGCAAAGATTTATAGGGCGGCGCCTGTGGCTCAGTGAGTAGGGCGCCGGCCCCATATACCGAGGGTGGTGAGTTCAAACCCAGCCCCAGCC-AAACTGC i otoGar1.scaffold_7340.1-269436 C 0 I 166 s tupBel1.scaffold_132008.1-22537 12666 10 + 22537 C----------------------------------------------------------------------------------------CC-AAGATCC i tupBel1.scaffold_132008.1-22537 I 138 I 35 s cavPor3.scaffold_248 194343 10 + 667635 C----------------------------------------------------------------------------------------CC-AAAGACC i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_89462 1231 10 + 2931 C----------------------------------------------------------------------------------------TC-ACAATGC i dipOrd1.scaffold_89462 C 0 C 0 s oryCun2.chrUn0106 642932 10 + 1032594 C----------------------------------------------------------------------------------------CC-ACAGGCC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29909551 10 - 76506943 C----------------------------------------------------------------------------------------CC-AAAGGCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119381 10 - 94057673 C----------------------------------------------------------------------------------------CC-AAAGGCC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152389 9 + 42029645 A----------------------------------------------------------------------------------------TC--ATTGCC i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_235026 5159 11 + 56848 T----------------------------------------------------------------------------------------CCTAAAAAAT i sorAra1.scaffold_235026 C 0 C 0 s choHof1.scaffold_56076 8306 10 + 9564 C----------------------------------------------------------------------------------------CC-AAAGGCC i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84133 11 - 3408981 C----------------------------------------------------------------------------------------CCAAAAGGCC i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=55165.000000 s hg19.chrUn_gl000223 23028 21 + 180455 CTCATC-------------------------------------------------------------------------------AAGGAATAAAATGAG s rheMac2.chr11 156554 18 - 134511895 C---TG-------------------------------------------------------------------------------CAAGTGTAAAATGAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 181944 21 - 136387465 CTCATC-------------------------------------------------------------------------------AAGGAATAAAATGAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 153424 21 - 135371336 CTCATC-------------------------------------------------------------------------------AAGGAATAAAATGAG i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 36340 21 - 269436 CCCATC-------------------------------------------------------------------------------AAGGAGTAAAATCAG i otoGar1.scaffold_7340.1-269436 I 166 C 0 s tupBel1.scaffold_132008.1-22537 12711 100 + 22537 GCCATCCCCCTGGGGGGTGATTTCTCGCTCTCTGTCTCTCTCTTTCTGGCAATCGCACGTGCCCTACAGCAAAAACCTCTCAAAAAAAGAGTGAAATGTG i tupBel1.scaffold_132008.1-22537 I 35 C 0 s cavPor3.scaffold_248 194353 21 + 667635 CTGAAC-------------------------------------------------------------------------------ATGGAATGAAATAAG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_89462 1241 21 + 2931 TTGATT-------------------------------------------------------------------------------AAAGAATGACTAGAG i dipOrd1.scaffold_89462 C 0 C 0 s oryCun2.chrUn0106 642942 19 + 1032594 TTGATC-------------------------------------------------------------------------------AAGGA--GGAAAGAG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29909561 21 - 76506943 CTGATC-------------------------------------------------------------------------------AAGGAGTGAAATGAG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119391 21 - 94057673 CTGACC-------------------------------------------------------------------------------AAGGGGTGAGACGAG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152398 21 + 42029645 CTGATC-------------------------------------------------------------------------------AAGGAGTGAAATGAG i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_235026 5170 21 + 56848 ATGATC-------------------------------------------------------------------------------AAGGAgtgaaataag i sorAra1.scaffold_235026 C 0 N 0 s choHof1.scaffold_56076 8316 21 + 9564 CTGATA-------------------------------------------------------------------------------AAGGAGCGAGGTGAG i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84144 21 - 3408981 CTGACC-------------------------------------------------------------------------------AAGGAATGAAAAGAG i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=210672.000000 s hg19.chrUn_gl000223 23049 126 + 180455 TCTCACTGTGGAGGTTAGGCAAT-GTGTCTAAGTAGTA--ACAGTGAGAGTTTTCAGAATT-CTGAGTAAT-------------------TA--------TATAATGAAGAGCCTAG------CTCTTGTGTT-TTGTTGTATAACT-GGAGAAAAGGAG-AA----A---AA s rheMac2.chr11 156572 126 - 134511895 TCGCACTGTGGAGGTTAGGCAAT-GTGTCTAAGTAGCA--ACAATGGGAGTTTTCAGAATT-CTGAGTAAT-------------------TA--------TATAATGAAGAGCCTAG------CTTTTGTGTT-TTGTTGCATAACT-GGAGAAAAGGAG-AA----A---AA i rheMac2.chr11 C 0 I 1083 s ponAbe2.chr12 181965 127 - 136387465 TCTCACTGTGGAGGTTAGGCAAT-GTGTCTAAGTAGTA--ACAGTGGGAGTTTTCAGAATT-CTGAGTAAT-------------------TA--------TATAATGAAGAGCCTAG------CTCTTGTGTT-TTGTTGTATAACT-GGAGAAAAGGAGAAA----A---AA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 153445 126 - 135371336 TCTCACTGTGGAGGTTAGGCAAT-GTGTCTAAGTAGTA--ACAGTGAGAGTTTTCAGAATT-CTGAGTAAT-------------------TA--------TATAATGAAGAGCCTAG------CTCTTGTGTT-TTGTTGTATAACT-GGAGAAAAGGAG-AA----A---AA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 36361 124 - 269436 TCTCACTATGGAGGAAGGGCAAC-GTGTAGCAGCAGTG--GCAATGGGAGTTTTCAGAATT-ATGAGTAAT-----------------------------TATAACTAGGAGCCTAA------CTTTTGTGTT-TTGCTATACAAAT-GGAAAAAAGGAG-AA----A---AA i otoGar1.scaffold_7340.1-269436 C 0 I 1 s tupBel1.scaffold_132008.1-22537 12811 124 + 22537 TCTAATTA---AAAATGGACAAT-GTATATAATCAACA--TCAAGGGGAGTTTTCCAAATTGACCAATTAT-------------------TA--------TGTAACTCAGAGTTGCG------TTTTTTTGTT-TTGTTGTACAACT-GGAAAAAAGGAA-AA----A---AA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 194374 85 + 667635 TCTCACTGTGGAGAGTTTGTAA----------GTGGTG--GCTATGAGAATTTCTCGAATG-CTAAGTAAT-------------------TA------------------------------------------------CACAACTAAGAGGAAAAGGA-GG----A---AA i cavPor3.scaffold_248 C 0 I 3 s dipOrd1.scaffold_89462 1262 133 + 2931 CCTCACCATGGAAAGTAGACAGT-GTGTCGATATGGGG--GTAATAAGAGTTTCCAGAATT-CTGAGTAAT-------------------TCTGATACCCTGAAGATCCTAGGTTTT------TTGTTTTGTT-CTATTTCACAAC--AGAGGAGAAGTA-GA----A---AA i dipOrd1.scaffold_89462 C 0 I 3 s oryCun2.chrUn0106 642961 89 + 1032594 TCTCATTGTGGTGGGCAGACGA----------ACTGTG--TAAGTAAAAAT------------TATATAAC-------------------TA--------------------ACGTC------CTTTTTTGTT-TTATTATATAACC-AGAAAAAAAGAG------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29909582 123 - 76506943 T-CCACTGTGGAGGGTGGACAGT-GTACGT---AAGTAGTGCAATGACAGTTTTCAGTATT-CTGAGTTAT-------------------TA-TTAAGAATATAAGTAAGAGCTTAG------CTGTTTTGTT-TTATTGTGTAGTT-GAA------GAA-AA----A----- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119412 132 - 94057673 GCCCATTGTGGAGGGTGGACAGTGGTATGTCAGCAGTG--GCAATGGGAGTTTTCAGAATT-CTGAGTAAT-------------------TA-TTGAGAGTATTACTAAGAGCCTAG------CTGTTTGGTT-TTGTTGTACAGCT-GGAGAAAAGGAG-AA----A----- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152419 109 + 42029645 TCCCATTGTGGAGAGCAGACAAT-ATATAT---AAGTA--GCAATGGGAGTTTTCAGAATT-CTGAGTG-------------------------------------TAAGAGCCTAC------CTGTTTTGTT-TTATT----AAGT-GGA-AAAAGGAG-AA----AAAA-- i canFam2.chr26 C 0 C 0 s choHof1.scaffold_56076 8337 146 + 9564 TCCCGGTGCAGAGGACGGACAGT-GTGCATAAGTTGTG--GCAAT-GGAGAATTCAGAATT-CTGAGTAATACAGGCCAAGAAATTAT--TA--------TACAACTAAAAGCCAACtttatttttttttattattattgtataatt-GGAGACAAGGAG-AA---------- i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84165 152 - 3408981 TCCCACTGCAAAGGGAAGACAGC-ACACCTAAGTCATG--GCACTGGGAGATTTTTGAATT-CTGAGGAATGCAGGTCAATTAGTTATTGTA--------TATAACTAAAAGCCTAGTTATTTTTGTTTTGTT-TTGTTCAACAACT-AGGGAAAAGAAG-AAAAAA------ i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=177545.000000 s hg19.chrUn_gl000223 23175 106 + 180455 CATAAATTA-TCTGTCCTGAGATAATTTACAATTTTATT-----CAAAATAAA-GGATTATACACATGAACAATATGGATTTTTGGC-ATTGGTTGTAAAAATTCTTA-------AGATTT s ponAbe2.chr12 182092 106 - 136387465 CATAAATTA-TCTGTCCTGAGATAATTTACAATTTTATT-----CAAAATAAA-GGATTGTACACATGAACAATATGGATTTTTGGC-ATTGGTTGTAAAAATTCTTA-------AGATTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 153571 104 - 135371336 C--AAATTA-TCTGTCCTGAGATAATTTACAATTTTATT-----CAAAATAAA-GGATTATACACATGAACAATATGGATTTTTGGC-ACTGGTTGTAAAAATTCTTA-------AGATTT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_7340.1-269436 36486 106 - 269436 TATAAATGA-TTTGTTCTGAGACAATTTACGATCTTATT-----CATGATAAA-GGATTGAATGAGTGCATAACATGGATTTTTGAC-TTTGGTTATAAAAATTCTTA-------AGATCT i otoGar1.scaffold_7340.1-269436 I 1 I 621 s tupBel1.scaffold_132008.1-22537 12935 86 + 22537 TGTAAATGATTTTGTACAGAGGTCATTTATCATTTTGTT-----CAAGGTAAA-A---------------------TGATTTGTGGT-CTGGGCTGAAAACATTGTTA-------AGATCT i tupBel1.scaffold_132008.1-22537 C 0 I 5 s cavPor3.scaffold_248 194462 101 + 667635 AAAGCA--A-TTTGTCCTGAAATAATTTAG--TTTTGCT-----CAAGATTTA-GGACTATATATGTGAACAACTTGGATTTCTCAC-TCTGGTT-GCAAAAGTCTTA-------AAATCT i cavPor3.scaffold_248 I 3 I 4 s dipOrd1.scaffold_89462 1398 100 + 2931 TATGGATTA-TTTGCCCAGAAATGACATGC--AGTTGTT-----CACAACTTA-GGACTATAGATGAGAACAACACAGACTTCCTGT-TCTGGTTGGGAAAAGTCTT-----------Ctt i dipOrd1.scaffold_89462 I 3 I 4 s oryCun2.chrUn0106 643050 96 + 1032594 --------A-ACTGATCTGGGACGATTTACAATTTTGCT-----GAAGATAAA-CAATTATCTAT--AAAGTGCATTGACTTATAGC-TTTGGTTGTAAATTTTCTTA-------AAATGT i oryCun2.chrUn0106 C 0 I 16 s bosTau4.chr17 29909705 76 - 76506943 -AAATATGC-TTTGTCCTGAGATAATTTATAATTTTGTG-----------------ACTGTACATGTGAACAACA-------------------TGTAAACATTCTTA-------AGATCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119544 105 - 94057673 -ACACGTGA-TTTGTCCTGAGATAACTTACAATTTTGTG-----AAAGATAAA-GGATCATACATGTGAACAACGTGGATTTCTGGC-TTTGGTTGTAAAAATTCTTA-------AGATCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152528 112 + 42029645 TAAATGCAA-TTTGTCCTGAGATAATACACAGTTTTGTGAGAAAAAAAAAAAA-GGATTATACATGCAAACAACATGGATTTCTGGCTTTTTGTTGTAAAAGTTCTTA-------GAATCT i canFam2.chr26 C 0 C 0 s choHof1.scaffold_56076 8483 107 + 9564 -ATGTGAGA-CTT------AGAAAATTTACAATTCTGTG-----AAAGATAATAGGATTATAAGCCCGAACAACATCAATTTCTGGT-TTGGGGTTTTAAAATTCTTAACTTCCCACATTT i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84317 83 - 3408981 TATATGTGA-TTTATCCTAAGATAATTAACAATTTCATG-----ACAAAGAAT-GAATTATGCATATGAACAACAT---------------GTGTTGTA----------------ACACTT i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 156698 1083 - 134511895 I a score=57855.000000 s hg19.chrUn_gl000223 23281 60 + 180455 TACAGTATTCCTTTA----------------------TG-TTAATAAACAATGTATATTTTCCTTAATACCAGCCTA-TTTTAA s ponAbe2.chr12 182198 60 - 136387465 TACAGTATTCCTTTA----------------------TG-TTAATAAACAACGTATATTTTCCTTAATACCAGCCTA-TTTTAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 153675 60 - 135371336 TACAGTATTCCTTTA----------------------TG-TTAATAAACAATGTATATTTTCCTTAATACCAGCCTA-TTTTAA i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_132008.1-22537 13026 62 + 22537 CACTTCATGTATTTG----------------------TGTTTAATAAGCAACGTTTATTTTACTTAATACCAAGCTATTTTTAA i tupBel1.scaffold_132008.1-22537 I 5 C 0 s cavPor3.scaffold_248 194567 58 + 667635 TACCACAAGTAGTGC----------------------AT-TTAATAAGCA--GTATGTTTTCCTTAGTATCAGCCCA-TTTGCA i cavPor3.scaffold_248 I 4 I 91 s dipOrd1.scaffold_89462 1502 34 + 2931 tattctatattattt----------------------tg-ttatt--------tatattttattt------------------- i dipOrd1.scaffold_89462 I 4 I 577 s oryCun2.chrUn0106 643162 65 + 1032594 TAGTAAAGACTATTC----------------CTTTGAGT-TTAATAAGCAGTGTCTATTTTACTTAACACCAGTCCA-ATGAC- i oryCun2.chrUn0106 I 16 C 0 s bosTau4.chr17 29909781 75 - 76506943 CACAACACTTTATGAATAATGAAGACAATCCCTTTATGT-TTAATAAGGGATGTATATTTTCCTTAATACCAGCCT-------- i bosTau4.chr17 C 0 I 240 s equCab2.chr8 64119649 82 - 94057673 TAGAATACTTTATGAATAGTAAAGACAATTCATTCATGT-TTAACAGACGATGTATATTTTTCTGAATACTAGCCTG-TTTTAA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152640 82 + 42029645 TACAACACTTCATGAATAGTGAAGACAATCCGTTTGTAT-TTAATAGGCAATGTATATTTTCCTTAATGGCAGCCAA-TTTTAA i canFam2.chr26 C 0 C 0 s choHof1.scaffold_56076 8590 72 + 9564 ----------TACAAATAATGAAGACTATTCCTGTGTGT-TTGATGTGCAATGCGTGCTTCCCCTCATGTCAGCCTA-TTCTAC i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84400 71 - 3408981 ----------CATGGAGAGTAAAGACTATTCCTTTGTGT-TTAACACGC-ATATATGTTTTCCTTAATGCCAGCCTA-TTTTAA i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 156698 1083 - 134511895 I a score=59763.000000 s hg19.chrUn_gl000223 23341 26 + 180455 TATAAT------------------TCAGCCAGA----------ATTTCTTCAGG s panTro2.chr12 153735 26 - 135371336 TATAAT------------------TCAgccaga----------atttcttcagg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182258 26 - 136387465 TATAAT------------------TCAgccaga----------atttcttcagg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 157781 26 - 134511895 TATAAT------------------TCAgccaga----------atttcttcagg i rheMac2.chr11 I 1083 C 0 s tupBel1.scaffold_132008.1-22537 13088 26 + 22537 CAGGGT------------------TTggccaga----------atttcttcatg i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_89462 2113 26 + 2931 TATGGT------------------TTGGCCAAC----------ATTTCTTTATG i dipOrd1.scaffold_89462 I 577 C 0 s cavPor3.scaffold_248 194716 54 + 667635 TGTGCTGCCGAGTCCAGCGCAAAATTAGCCTATTTTAATATGAGTTTCTTCACG i cavPor3.scaffold_248 I 91 C 0 s oryCun2.chrUn0106 643227 26 + 1032594 TATGAA------------------CTggccagc----------acgtcttcatg i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29910096 26 - 76506943 AATGAT------------------TTGACAAGA----------ATTTCTTCATA i bosTau4.chr17 I 240 C 0 s equCab2.chr8 64119731 25 - 94057673 TACGAC------------------TTGGCAAG-----------AATTTTTCACG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3152722 25 + 42029645 TATGAT------------------TTGGCAAG-----------ATTTCTTCCTG i canFam2.chr26 C 0 I 797 s choHof1.scaffold_56076 8662 26 + 9564 TGCggt------------------ctggccaca----------gtgcctccaca i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84471 26 - 3408981 TGTCAT------------------TTGGAGAGA----------atttcctcacg i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=463696.000000 s hg19.chrUn_gl000223 23367 286 + 180455 GTAATAATTCGCTACAGCA-GAT-AACAGCA---CCACCCTTCAAATGGGGCATACAGTCTCAAGTTTGTCACAGTTATCCCTAATCCTAAAGAAATAC-----CTGTGAAACTTA---GTGGTAATTTTAGCAATGTCACAGAA-------CAAG---GAGGATAAGCAATAA----AGAATCTTGATTCCGCAAGAAGAG-AATGTAATACCTCCCAGGACAGAACCTAAAGCACTTTCCCTCAGAGTTAGGGGGAATAATATAT----AAGCC-----CTTGCTTTGCAGCCTGGTTTTGCAC--CAC----TTGAGTGATCCACA s panTro2.chr12 153761 286 - 135371336 gtaataattggctacagca-gat-aacagca---ccacccttcaaatggggcatacagtctcaagtttgtcacagtTATCCCTAATCCTAAAGAAATAC-----CTGTGAAACTTA---GTGGTAATTTTAGCAATGTCACACAA-------CAAG---GAGGATAAGCAATAA----AGAATCTTGATTCCGCAAGAAGAG-AACGTAATACCTCCCAGGACAGAACCCAAAGCACTTTCCCTCAGAGTTAGGGGGAATAACATAT----GAGCC-----CTTGCTTTGCAGCCTGGTTTTGCAC--CAC----TTGAGTGATCCACA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182284 286 - 136387465 gtaataattggctacagca-gat-aacagca---ccacccttcaaatggagcatacagtctcaagtttgtcacagtcatccctaatccTAAAGAAATAC-----CTGTGAAACTTA---GTGGTAATTTTAGCAATGTCACAGAA-------CAAG---GAGGATAAGCAATAA----AGAATCTTGATTCCGCAAGAAGAG-AATGTAATACCTCCCAGGACAGAACCTAAAGCACTTTCCCTCTGAGTTAGGGGGAATAATATAT----AAGCC-----CTTGCTTTGAAGCCTGGTTTTGCAC--CAC----TTGAGTGATCCACA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 157807 286 - 134511895 gtaataattggctatagca-gat-aatagca---gcacccttcaaatggggcatatagtctcaagtttgttccagtcATCCCTAATCCTAAATAAATAC-----CTGTGAAACCTG---GTGGTAATTTTGTCAATGTCACAGAA-------CAAG---GAGGATAGGCAGTAA----AGAATCTTGATTCTGCAAGAAGAG-AATGTAACACCTCCCAGGATAGAACCTAAAGCACTTTCCCTCGGAGTTAGGGAGAAAAATATAG----AAGCC-----CTTGCTTTGCAGCCTGGTTTTGCAC--CAT----TTGAGTGATCCACA i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 13114 243 + 22537 gtaataactggctgtcaca-gat-agctgca---gcaccctcc-agtaggacatgcactctcaagtttgtcaaagtgatcttcacaactGAA-AAACAA-----CTGTGAAACTTA---GCT---ATTTTAGCAATGTCACAGAA-------CAAG---GGTAA----AAACAA----GGTACATAAATCTCCCACAAAGAA-A-------ACAGCCCAGG-TGGAATCTATAGGTCTTTCCCTAAGGTTCAGA-----------------------------------ACAGTATGGTTTTGCAC--CAC----TTGAGTAATCCACA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_89462 2139 248 + 2931 GTAATAACTGGCTGTATTAGGGT-ATCAGCAATGATACCCT-------------------------------------AACACAATCTC---------------CAACAAATCATA---GTGACAATTTTAGAAATATCACAATA-----AAAAAGACGAGCAACAAACAATACATAAAGTGCACATGCTTCTCAA----GA-AACATAATGTTTCTCCAAATGGAACCTAAAGCTCTTTGCCTCAGGGTTACTGGAAATAAT--------AAAACAAAATTCTACTTCACAACATGGTTTTGAA---CAC----TTCAATGAGCCACA i dipOrd1.scaffold_89462 C 0 N 0 s cavPor3.scaffold_248 194770 274 + 667635 ATAATAGTTGGCTGCAACA-GAT-AACAGCA---GCACCCTTAAAATGGGTCATGCA-----AAGTCAAATCTG--TCAACGTCATCCCAAAGAAACTTAGCTACAATGAAATACA---GCAGAAATTGTATCAATGTCACACAA-----GGAAAG--------TAAGCAATGT----AGTACACAGACCCCCAAAGTAGGA-AATGTAATCCTTCCCAGGATAAAACCT-AAGCTCTTTTCCACAGGGTAA--AAAAATAAT--------AAGAC-----CCTACTTTGAAGCTTGGTTT--AATTCCAC----TTGAGGAATCCATA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 643253 269 + 1032594 ---ataactggctaaagca---------gta---gcacccttcgaaaaggaaatgta--ctccagtttatcacggttctcTCTAATCCTGAAGAAACAG-----CTATAAGACGTA---GCAGCAACTTTAGCAATGACACAGAACTACTAGCAAG---AGGGATATGCAATCA----AGCGCATGGGCCTCCCAAGGAGGC-CACGCACTGCGTCCCAGGTCAGAACCA-AACGTCGTCTCCGC-GGACTGCGGGGGCTCATCTAC----AAGGC-----TTTGCTCTGCAGCCTGGC---------CAC----TCGAGTGACCC--- i oryCun2.chrUn0106 C 0 I 621 s bosTau4.chr17 29910122 240 - 76506943 GTCACTACTGGCTGTAGCA-TAC-AGCAGCA---GCACC-TGTTTAAGGGACACACA--CCCAGGTTTATCCCAGGCATCCCCATTTCTG-AGAAATAG-----CTGTGAAACTTG---GAGACAATTTCAGCAAAGTCATGGAA-------CAAG---AGAA---T----------------AAAGACTA---AAGTATAA-GGT------CATTCCAGGGTGGAACCTAAAGCTTTTTCCCTCAGGGTT-GGGGTAATAAT--------AAGCC-----CCTGCTTTGCAGC---------------AC----TGGAGTGATCCACA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119756 237 - 94057673 GTAACAACTGGCTGTAGCA-GAT-AACGGCA---GCTCC---------------GCG--CTCGAGTTGATCGCCCCCATCCCCATTGCTGTAGGCAGAG-----CTGGGACACTTA---GCGGC-----AACCGCAGCAACAG-----------------------CGCAGTCC----C----AGGCGCTCTCCAAGAGGGG-CGAG---CGCCCCCCGGGACGGAGCCTAA-GCTTT-CCCCGCAAGGTTACGCG-GATAAT--------AAGCC-----GCTGCTCTGCAGCCGGGTTTTGCAC--CAC----TTGAATGATCCACA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3153544 274 + 42029645 GTAGCAATTGGGTATGGCA-GAC-AGCAGCA---GCACCCTTGAGAAGGGACATGCA--CTCAAGTGCATCACAGCTATCCCCATTCCAGAAGAAACAG-----CTAGGAAACTGA---GGGATACTTGAAGCAAAGTTACAGAA-------CAAG---GAGAATTAGCAGTAG----AGTGTAAGGACTACCCAAGGAAAA-GATATAATACTTCCCAAGACCAAGCCTAGCACTTTCCCCCTCAGAGTTAGGGGTAACAGT---------TACC-----TC-----TGCAGCCTGGTTTTGCCC--CAC----TTGAATAATCCACA i canFam2.chr26 I 797 C 0 s felCat3.scaffold_141213 82350 262 - 90490 ----------GCAACCGCA-GAC-AGCAGCC---CTACCTTTAAAAAGGGGCATGCA--CTCAAGTGCAACCCGGTTACCGCCATTCCTGAAAAAAGGG-----CTACCAAACTTACCCGGGATGT---AAGCAGTGTCACAGAA-------CAAG---GATA---CACAGTAA----G----AAAGACTACCCAAGGAAGG-CATGTCCCCCATCCCAGAATGGAACCAAAAGCTTT-CCCCTCGGGGTTAGGAGTCATAAT--------GTGCC-----CCCACTTCACGGCCTGCTTTTGCAC--TGC----TTCAGTAACCCACA i felCat3.scaffold_141213 N 0 C 0 s choHof1.scaffold_56076 8688 278 + 9564 ggagcta----acggcggg-agtgagcagca---gcgcccttcagatgggccatgcactctccagtttgtcacgattgtctccaatccTGAAGAAACAG-----CCATGAAACT------TAGCGATTTTAACAATGCCTCAAGA-------CAAG---GAGGACAAACAGCAA----AGTACAAGGACCTCCCAAGGTGAGCAATTTAACACCTTCCAAGGTGGAACCTAAACAA-GTGCTCTCGGGGTTGGGGCAAATAACAAATAAACAAGGC-----CCTGCTTTGCAGCC--GCTTA------CAC----CTGAGTGACCCATG i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84497 278 - 3408981 gtaacaataacatggagca-aat-agcagca---gctcccttccaacagggcatgcactctcgagtttctcacaatcatctccaATTCTG----AACAG-----CTGTGAAACTTT---GTGGCATTTTTTGTAATGTCACAGAA-------TAAG---GATAATAAACAGCAA----AGTGAAATGACCTCCTAAGAACAG-AACGTAATACTTTCCAGGGTGGAATCTAAAGAGCTTTCCCTCAGGGTTAGGG-GAATAATACATAAATAAGCC-----CCATCCGTGCAACCTGGATTT------GACCCCTCTGAGTG------- i loxAfr3.scaffold_113 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=129069.000000 s hg19.chrUn_gl000223 23653 92 + 180455 TTGATCTATAAGGCATGAATGGGAA--TTTAAAATGTCTCAAACT----AGTAGCAGTC-CCAGATGGATGGC--AGTTAT---------AATTTACAGTTTTGAAGT--TT s panTro2.chr12 154047 92 - 135371336 TTGATCTATAAGGCATGAATGGGAA--TTTAAAATGTCTCAAACT----AGTAGCAGCC-CCAGATGGATGGC--AGTTAT---------AATTTACAGTTTTGAAGT--TT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182570 92 - 136387465 TTGATCTATAAGGCATGAATGGGAA--TTTAAAAGGTCTCAAACT----AGTAGCAGCC-CCAGATGGATGGC--AGTTAT---------AATTTACAGTTTTGAAGT--TT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 158093 92 - 134511895 TAGATCTATAAGGCATGAATGGGAA--TTTAAAAGGTCTCAAACT----AGTAGCAGCC-CCAGATGGATGGC--AGTTAT---------ATTTTACAGTTTTGAAGT--TT i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 13357 93 + 22537 T--GCCCATCAGGTGTGAATGGGAACTTTTCAAA----TCAAATTTGAAAACAGCAGCC-CCAGATGTATGGCAAAGTTGT---------ATTTTACATTTTTAATTT--T- i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 195044 88 + 667635 --CAGCTATAACGTATGGACAGGAA--TTAAAAATATC----ACT----AATAGCAATCATTAAATATACGGA-AAGTTAT---------ATTTTACAGTTTTAAAGT--TT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29910362 92 - 76506943 --TAGCCATTAGGCATGAA-GGGGA-TTTTTAAAAGTCCCAAACT----AGTAACAGTT-CCAGAGGTATGACAGAGTTAT---------ATTTTACAGTTAAAAACAAA-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64119993 78 - 94057673 --GCA-CGCTAGGCATGGCCATGAA-TTTTAGAAGGTCCCAGA-----------------CCACACGTAGGGCAGAGTCTT---------ATTTTACAGTTTAAATTT---- i equCab2.chr8 C 0 I 1 s canFam2.chr26 3153818 80 + 42029645 --TAACCATGAAGCTTAAACAAAAA-TGTTGAAAGGTGCCAAACC----AGTAAGAGCC-CCGGAAATACCGC--AGCTAT---------ATTTTACAG------------- i canFam2.chr26 C 0 I 443 s felCat3.scaffold_141213 82612 89 - 90490 --GAACCATTAAGCATGAGCAGAAA-TTTTAAAAGGGGTCAAACT----AGTAAGAGCT-CCAGATGCATGGC--AGTTGC---------ATCTTACAGTTAAAAAAA---- i felCat3.scaffold_141213 C 0 I 2 s choHof1.scaffold_56076 8966 93 + 9564 --CAACCATGAGGCTTGAGCATGAG--TCCAGATGGTCCCAAACC----AGTAGCAGCC-CCAGATGCATGGCAGAGTCATAGTCTTCAAATTTTAAAATGT---------- i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84775 77 - 3408981 -------ATAAGACATGAAAATAAA--TCTAAAAGATTCCCAACT----AGTAACAG-A-CCAGGTGTATAGCAGAATTAT----------TTTTACAATTT---------- i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=38691.000000 s hg19.chrUn_gl000223 23745 35 + 180455 ------AATAAAA-------------AA-GTGATTAAAGACTGTTGAC----TAATAAA s panTro2.chr12 154139 35 - 135371336 ------AATAAAA-------------AA-GTCATTAAAGACTGTTGAC----TAATAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182662 35 - 136387465 ------AATAAAA-------------AA-GTGATTAAAGACTGTTGAC----TAATAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 158185 39 - 134511895 ------AATAAAA-------------AA-GTGATTAAAGACTGTTGACTATTTAATAAA i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 13450 31 + 22537 ----------AAA-------------AA-GTGATAAAAGATTGTTGAC----TCCTAAA i tupBel1.scaffold_132008.1-22537 C 0 I 343 s cavPor3.scaffold_248 195132 31 + 667635 ----------AAG-------------AC-ACGGTAAAACATTGTTCAC----TAATAAA i cavPor3.scaffold_248 C 0 I 1 s bosTau4.chr17 29910454 43 - 76506943 -----------AATTCAAGTCGCTATAACTTGTT-ATAGATTATTGGC----TAATAAA i bosTau4.chr17 C 0 I 1 s equCab2.chr8 64120072 26 - 94057673 -----------------------TTTAA-----T-AAAGACTATTGAC----TAATAAA i equCab2.chr8 I 1 I 1 s felCat3.scaffold_141213 82703 41 - 90490 ---------AAAA---AAAAAGTTTTAA-GCGAT-AAAGGTTACTGAC----TAGTAAA i felCat3.scaffold_141213 I 2 I 1 s canFam2.chr26 3154341 43 + 42029645 ------AAAAAAA---AAATGGTTTTAA-ATGTTAAAAGATTACTGAC----TGATA-- i canFam2.chr26 I 443 C 0 s choHof1.scaffold_56076 9059 38 + 9564 GTT---TTTTAAA-------------AA-GTGGTAAAATATTGCTGGC----TGATAAA i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84852 41 - 3408981 TTTAAGTTTAAAA-------------AA-GCAATCGAAGACTGTTGAC----TGATAAG i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=302444.000000 s hg19.chrUn_gl000223 23780 124 + 180455 GCAGCTGTTTCCTAC-----------ACAGCA-AGATCTGCAGCAGAGGTGGAAATTGGATTCCCCAGCAAAACTC-AGAGAACCTCTGAATTTGGAGAGAAGTATGACAAAAA----GTAGGATAAAGAAGTGGAACTG-A- s panTro2.chr12 154174 124 - 135371336 GCAGCTGTTTCCTAC-----------ACAGCA-AGATCTGCAGCAGAGGTGGAAATTGGATTCCCCAGCAAAACTC-AGAGAGCCTCTGAATTTGAAGAGAAGTATGACAAAAA----GTAGGATAAAGAAGTGGAACTG-A- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182697 124 - 136387465 GCAGCTGTTTCCTAC-----------ACAGCA-AGATCTGCAGCAGAGGTGGAAATTGGATTCCCCAGCAAAACTC-AGAGAGCCTCTAAATTTGGAGATAAGTATGACAAAAA----GTAGGGTAAAGAAGTGGAACTG-A- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 158224 125 - 134511895 GCAGCTGTTTCCTAC-----------ACAGCA-AGATCTGCAGCAGAGGTGAAAATTGGATTCCCTAGAAAAACTC-AGAAAGCCTCTGAATTTGGAGAGAAGTATGACAAAAA----GTAGGACAAAGAAGTGGAACTGAA- i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 13824 121 + 22537 aaagGTGTTTCCTAA-----------ACCGTG-AGATCTGCAACAGAGATAGAAACCTGATACCACAGCAAAACTC-CAGGAGCCTC-AGATTTGAGGAAAAGTACGATAAAAG----GTAAGAC--AGAAATGGATCTA-A- i tupBel1.scaffold_132008.1-22537 I 343 C 0 s cavPor3.scaffold_248 195164 109 + 667635 GAAGCTGTTTCGTAG-----------ACTACACAGAGCTGCAGCAGTGGTGGAAACTGGATTCCACAACAAAACAC-ACA-AGTCTCTGGATTTGGAGACAA----GACGAAAA----GTAGGCC--AGGA----------A- i cavPor3.scaffold_248 I 1 C 0 s bosTau4.chr17 29910498 135 - 76506943 GAAGCTGTTTCCTAATATAATATACTGCACTG-GGATCTGCAGTACAGAAGGAAACTGGACT-CCCAGCAAAAGTT-GGAGAGCCTCTGGATTTGGAGACAAGCATGAAAAAAAA---GCAGGACAGAGAAATGAAACTG-C- i bosTau4.chr17 I 1 I 2 s equCab2.chr8 64120099 121 - 94057673 GAAGCTGTCTCGTAA-----------ACAGTG-GGATCTGCAGCACAGGTGGAA--CAGACGCCCCAGCAAGAGCC-GGAGAGCCTCGGGGCTTCAAGACCAGCAGGGCA-AGC----GCGGGAGCGAGAGGCGGACCTA-A- i equCab2.chr8 I 1 I 1038 s felCat3.scaffold_141213 82745 128 - 90490 GAAGCTATTTTCTCA-----------ACCACG-GAATCCGCAGCACAGATGGAAACTGGACTCCCCAGCAAATTTG-GGAGAGCATCTGGATTTGGAGACAAGCATGAGACAACGTATGTAGGGCAGAGAAGTAGAACTA-A- i felCat3.scaffold_141213 I 1 I 2 s canFam2.chr26 3154384 122 + 42029645 -AAGCTATTTCCTAA-----------ACAGTG-GAATCTGCACCACAGATGGAAACTGCACT-CCCAGCAAAACGT-GAGGAGCGTCTGGACTTGGAAACAAACATGACACAAA----GTAGAGCAGAGAAGTGGAACTA-A- i canFam2.chr26 C 0 I 2 s choHof1.scaffold_56076 9097 106 + 9564 AAAAA------------------------------ATCTGCAGCAGGGATGGAAGCTGAACTCCCCAGCTCAATTC--GGGAGGCTCTGGACTTGGAGATAAACATGACAGTAG----ATGAGATAAGGAAGCGGGGCTA-AA i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 84893 129 - 3408981 AAAGCTGTTGCTTAAAGTGA------ACAGTG-GTATCTGCACCAGAGGTGGAAACTGGACTCCCCAGCAAAACTCAAGAAAGCCTCTGCAATTGAAAACAAGTGTAACAAAAG----GTAGGA-AGAGAAATGGAGCT--AA i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=117519.000000 s hg19.chrUn_gl000223 23904 91 + 180455 AATGAGGGACTCATTTTGAATAGTTGACCCTG-TT-ATCCCCACTGCTGTGAAGCACAATTACCAGCCAAGCCCTTAGGCCAAATC-AAAATAA s panTro2.chr12 154298 91 - 135371336 AATGAGGGACTCATTTTGAATAGTTGACCCTG-TT-ATCCCCACTGCTGTGAAGCACAATTACCAGCCAAGCCCTTAGGCCAAATC-AAAATAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182821 91 - 136387465 AATGAGGGACTCATTTTGAATAGTTGACCCTG-TT-ATCCCCACTGCTGTGAAGCACAATTACCAGCCAAGCCCTTAGCCCAAATC-AAAATAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 158349 91 - 134511895 AATGAGGGACTCATTTTGAATAGTTGACCCTG-TT-ATCCCCACTGCTGTGAAGCACAATTACCAGCCAAACTCTTAGCCCCAATC-AAAATAA i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 13945 84 + 22537 AAACAGGAATTAATTTGGAATGAGTGGCCCTG-TT-ATCCCCATCCCCGTGAAGCACGGTTACCAGCCAAGCATCTGATCCCAGCC-------- i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 195273 87 + 667635 AAACAAGAGGTGATTTGTAATGGTCGATGTTGTTT-ATGCCCACCTCTGTGAAGGACAATCACCAGCAG-----TTAGTTCCAACC-AAAATGA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29910635 92 - 76506943 CCAGACGGAATAATTTGGACTGGCTGGCCTTC-TTGTCCCCCACCTCTGTGGAGCACAACTGCCTGCCAAGCATTTAGCCtcaact-aaaacaa i bosTau4.chr17 I 2 I 39 s felCat3.scaffold_141213 82875 58 - 90490 AC--AGGAACTAAATCA-AACAGTTGGCCTTC-TT-ACCCCCACCTCTGTGAAAC--AACTGCCA----------------------------- i felCat3.scaffold_141213 I 2 C 0 s canFam2.chr26 3154508 64 + 42029645 ACAGAGGGCCTGGATCAGAATGGGAGGTGTTC-TCAACCCCCACGTCTGTGAAGCATAATTGCCC----------------------------- i canFam2.chr26 I 2 C 0 s choHof1.scaffold_56076 9203 87 + 9564 AAACAGAGATTCGTTTACAACGACTGACCCTT-TT-ATCCCCACC----TGAAGTGCAGTTGCCAG-CACACATTTAGCACCAAGCAGAAATAA i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 85022 78 - 3408981 AAACAGGAACTAATTTGGAATGGTTGACCCTC-TT-ATCCACACC----CTA---------GCCAGCCAGGCATTTAACTCCGAGC-GAACAAA i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e equCab2.chr8 64120220 1038 - 94057673 I a score=23488.000000 s hg19.chrUn_gl000223 23995 120 + 180455 AAATG--------TGTTCCTTAT--------------GTCATGTctgaaaaatgagctctgaggattcggaga-ttttgttttggtcacttctgca--------------tcctcaagactt-----agaaTGA---------------GTTGCAcattagaatcactt-ggaaggac s panTro2.chr12 154389 120 - 135371336 AAATG--------TGTTCCTTAT--------------GTCATGTctgaaaaatgagctctgaggattcggaga-ttttgttttggtcacttctgca--------------tcctcaagacat-----agaaTGA---------------GTTgcgcattacaatcactt-ggaaggac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 182912 120 - 136387465 AAATG--------TGTTCCTTCT--------------GTCATGTctgaaaaatgagctctgtggattcagaga-ttttgttttggtcacttctgca--------------tcctcaagacat-----agaaTGA---------------GTTgcgcattagaatcactt-ggacggac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 158440 120 - 134511895 AAATG--------TGTTCCTTAT--------------GTCATGTCAGAaaaatgagctctatgggttcagaga-ttttgttttggtcacttctgca--------------tcctccagACAT-----AGAATGA---------------GCTGAgcgttagaagcactt-ggaaggac i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 14029 73 + 22537 ------------------------------------------------------AGCTC-----------GGA-TTTAGTTTAGCTCACTGCTAC----------------CGGCAAGACCA-----AGACCTG---------------GTCACGCATCATAGCCACT---GCTGGAC i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 195360 115 + 667635 AAACAT----CACTGTTCCTAGGTAAGGAAACGTACAGTCATATCTGCAAAACGGGTATTGTCAATTTAA--------GTTTTGTTCATGGCTGCA--------------CCCCTAACA-----------------------------------GCATCAGAATCTCTC--GAGGGAC i cavPor3.scaffold_248 C 0 I 882 s canFam2.chr26 3154572 50 + 42029645 ---------------------------------------------------------------------CAGA-TTTTGTTTTGTTC-TTGCTGCG--------------TCGCCAGGACTT-----AGGAC--------------------------------------GGAGCGCC i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141213 82933 72 - 90490 ---------------------------------------------------------------------GAGA-CTTTG-TTTGCCC-CAGCTGAA--------------CCCCCCACACCC-----AGGATGG---------------GTCACgcatcagagtcacttgggagtgac i felCat3.scaffold_141213 C 0 C 0 s choHof1.scaffold_56076 9290 172 + 9564 -----ATCATCAGTCTTCCTTGCTAATGAAATTTAGTATCATCTCTGCAAAACAAGCTTGGCCAGCTCAGAGAGTTTTGTTTTGCTTACTGCTGCATCCCCTCAGACCATCCCCACCGACCTAACGGAGGTcagcagtgcttcaatttcatcacgcgtcagagctactt-gaagagac i choHof1.scaffold_56076 C 0 C 0 s loxAfr3.scaffold_113 85100 145 - 3408981 -----ATAATCAGTGCCCTTTGCTAAAGAAATTTAATGTCATGTctgaaaagtaaaatctatgagttcagaga-ttttcttttgctcactgctgca--------------ccccgaagacct-----aggttagtggttctcacatttta-------tcgaaatctctt-gcagcgac i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29910727 39 - 76506943 I e equCab2.chr8 64120220 1038 - 94057673 I a score=37634.000000 s hg19.chrUn_gl000223 24115 74 + 180455 tgt-------tagac--tgctgggccaaattctca--gtttctgattcagaaggtctggggtagga-ctca--agaatattcatttct s panTro2.chr12 154509 74 - 135371336 tgt-------tagac--tgctgggccaaattccca--gtttctgattcagaaggtctggggtagga-ctca--agaatattcatttct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 183032 73 - 136387465 cct-------taaac--tgctgggccaaattccca--gttcctgattcagaagg-ctggggtagga-ctca--agaatattcatttct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 158560 74 - 134511895 tgt-------tagat--tgctgggccaaattccca--gtttctgattcagaaggtctggggtagga-ctca--agaatattcatttct i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_132008.1-22537 14102 52 + 22537 TGC-------TGAACGGTGCTGGGCCACGCCCCCAGCGTGTCTGCCCCAAAGGG-CTGGG---------------------------- i tupBel1.scaffold_132008.1-22537 C 0 I 764 s canFam2.chr26 3154622 52 + 42029645 -----------------TGCTGAA----ATACCCAGGGGGCCT---------------GGGCGGCAGCTCGCCCGCACACACACCTAC i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141213 83005 69 - 90490 -----------------tgttgaactgcacacccagagtttctggttcagaaggtatgggaagggagctca--cgactatacgtttct i felCat3.scaffold_141213 C 0 C 0 s choHof1.scaffold_56076 9462 61 + 9564 gcctcaaaaccaggc--tgccgggccgcactccccagtttccca-----------------------ctcc--agggcgggcatccct i choHof1.scaffold_56076 C 0 I 1 s loxAfr3.scaffold_113 85245 81 - 3408981 tgttcaaa--cagac--tactgggccacatcctcagagtttctaattcagaaggtctggagtgagg-ctca--agaatacgcatttct i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_7340.1-269436 36592 621 - 269436 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29910727 39 - 76506943 I e equCab2.chr8 64120220 1038 - 94057673 I a score=81038.000000 s hg19.chrUn_gl000223 24189 34 + 180455 aatacgttctcagatgatgctgatactgctggtc s rheMac2.chr11 158634 34 - 134511895 aacaagttctcagatgatgctgatactgctggtc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 183105 34 - 136387465 aataagttctcagatgatgctgatactgctggtc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 154583 34 - 135371336 aatacgttctcagatgatgctgatactgctggtc i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_37582.1-1659 620 34 - 1659 aataaatttccaagtaatgctgatactgctggtc i otoGar1.scaffold_37582.1-1659 n 621 C 0 s canFam2.chr26 3154674 34 + 42029645 aagaagttctccagagatgctgacactgctggtc i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141213 83074 34 - 90490 agtaagttctcacgtgacgctgatactgctggtc i felCat3.scaffold_141213 C 0 C 0 s choHof1.scaffold_56076 9524 32 + 9564 agtaagctccc--ggggtgctgacgctgatggtc i choHof1.scaffold_56076 I 1 N 0 s loxAfr3.scaffold_113 85326 34 - 3408981 agtaagttctcaagtgatgctgatactgctggtc i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29910727 39 - 76506943 I e equCab2.chr8 64120220 1038 - 94057673 I a score=26409.000000 s hg19.chrUn_gl000223 24223 50 + 180455 caaggatcacactgtg--ggaaccactgAA------------------------------------AGTAGAGGTTCAGTAAAAACAT s rheMac2.chr11 158668 50 - 134511895 caaggatcacactgtg--ggaaccactgAA------------------------------------AGTAGAGGTTCAGTAAGAACAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 183139 50 - 136387465 caaggatcacactgtg--ggaagcactgAA------------------------------------AGTAGAGGTTCAGTAAAAACAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 154617 50 - 135371336 caaggatcacactgtg--ggaaccactgAA------------------------------------AGTAGAGGTTCAGTAAAAACAT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_37582.1-1659 654 73 - 1659 catgaatcacactgtgaTGGGGGTGTTGAAAATAAATAGTGAGGGCGACACCTGTCGCTCAGT--GAGTAGGGGA------------- i otoGar1.scaffold_37582.1-1659 C 0 n 0 s canFam2.chr26 3154708 44 + 42029645 caggagccagactctg--ag-accactgAC---------------------------------------ACCTGTGCTGCGAACGG-- i canFam2.chr26 C 0 I 2 s felCat3.scaffold_141213 83108 44 - 90490 caggaattccactttg--ag-accactgAC---------------------------------------ACAGGTGCTGAAAGTAC-- i felCat3.scaffold_141213 C 0 I 179 s loxAfr3.scaffold_113 85360 66 - 3408981 cagggatcacacactg--agaactactgat--------------------gcaggtgctcaataaaagtagatgctcagtaaaaacgt i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29910727 39 - 76506943 I e equCab2.chr8 64120220 1038 - 94057673 I a score=98691.000000 s hg19.chrUn_gl000223 24273 157 + 180455 ATTGAATAAATG------AATAAAGGGGCGCTGGAG---------TAACG-------TAAAGCACTCCTCATTCTAAC-------ACTGTGGG-AAAGAGGAGGCGATGTAACAGCTGGCACCCTACCCTCTCACC----------CTAAAACATGCCAGCCAGGTCAGAAACCCCGCCCACATCTGGATAGCTTCC s rheMac2.chr11 158718 156 - 134511895 ATTCAATAAATG------AATGAAGGGGCGCTGGAG---------TAACG-------CAAAGCACTCCTCGTTCTAAT-------ACTGTGGG--AAGAAGAGGCAATGTAACAGCTGGCACCCTACCCTCCCACC----------CTAAAACATACCAGCCAGGTCAGAAATCCCGCCCACATCTGGAGAGCTTCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 183189 157 - 136387465 ATTGAATAAACG------AATGAACGGGCACTGGAG---------TAACG-------TAAAGCACTCCTCATTCTAAT-------ACTGTGGG-AAAGAGGAGGCAATGTAACAGCTGGCACCCTACCCTCTCACC----------CTAAAACACGCCAGCCAGGTCAGAAACCCCGCCCACATCTGGATAGCTTCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 154667 157 - 135371336 ATTGAATAAATG------AATGAAGGGGCGCTGGAG---------TAACG-------TAAAGCACTCCTCATCCTAAT-------ACTGTGGG-AAAGAGGAGGCGATGTAACAGCTGGCACCCTCCCCTCTCACC----------CTAAAACATGCCAGCCAGGTCAGAAACCCCGCCCACATCTGGATAGCTTCC i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29910766 133 - 76506943 GACGAATAAGT------GAAAGAACGGCAGCGGGAG---------AGAGAAGCC---TAAAGCACTCCTCATTCCACCCAATTTGTTTGGCAA-AAGGAGAACGGGAC-----AGCCAGGTCTA--CGTTCAGACC--------------------------------------CCGCCCACATCGGGACAGCGCCC i bosTau4.chr17 I 39 I 25 s felCat3.scaffold_141213 83331 172 - 90490 CTTTAATATGTACGACTGAGAAAGGGGTAGCTGGAG---------CGAGGGACACAGTAAAGCCCTCCTCATTCTAAC-------GCTGGGAA-AAGGAGGAAGAAGT-----GACCTAACACACCCGCCCCCTCCCCCGCCGGCTCCCGACCTTCCC--CCGGGGCCGAAA-CCCGCCCACAACCGGACAGCTTCC i felCat3.scaffold_141213 I 179 C 0 s canFam2.chr26 3154754 95 + 42029645 GCTTAATAAACTCGTGGTGCAGAGGGGCAGC-GGAG---------CA------------------TCCTCACCCCCAC-------ACCGCGCG-AAGGAGGGAAGAAT-----CATCGCCCCCGCCCGCCCCCTCC------------------------------------------------------------- i canFam2.chr26 I 2 C 0 s otoGar1.scaffold_116463.1-303081 302412 138 - 303081 ------------------AAAGAAGGGCAGCTAGAGTGAGCGACATAAAG-------TAAAACGCTCCTCATTCTAAT-------GTTAGGGA-AAAGCTGAGGCGATGTAACAGCTGTCCCCCTGCTCTCTGACC----------GTAAAATACGCCTGCCAGGGCAGAAACCCC----------------CTTCC i otoGar1.scaffold_116463.1-303081 n 0 C 0 s loxAfr3.scaffold_113 85426 141 - 3408981 gttgaataaatg------GCTGAAGGGTAGCTAGTGAGAGTGACATGAAG-------TAAAGCAGCCCTCATTCCAAT-------ACTGGAAAAAAAGAGGAGACCGCGTAACAGCAGGC----TTCTGCCATACC--------------------------------AGAAGCCCACCCATGTCTGGATATCGTTC i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=84119.000000 s hg19.chrUn_gl000223 24430 108 + 180455 TGTC-ACTCTCTTCATGTATACTTAAGTATAAGCACCTGAAAAGGAGGAACAAGGGACAGGGTCCTGGGGTTCTGCCAGGCAGGTGGTTGTAGGAGAAAGAAAGCCACG- s rheMac2.chr11 158874 104 - 134511895 TGTC-ACTCTCTTCATGTATACTTAAGTATAAGCACCTGAAAAGGAGGAACAGGGGACAGGGTCCTGGGGTTCCGCCAGGCAGGTGGTTGTAAG----AGAAAGCCACG- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 183346 108 - 136387465 TGTC-ACTCTCTTCATGTATACTTAAGTATAAGCACCTGAAAAGGAGGAACAAGGGACAGGGTCCTGGGGTTCTGCCAGGCAGGTGGTTGTAGGAGAAAGAAAGCCACG- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 154824 108 - 135371336 TGTC-ACTCTCTTCATGTATACTTAAGTATAAGCACCTGAAAAGGAGGAACAAGGGACAGGGTCCTGGGGTTCTGCCAGGCAGGTGGTTGTAGGAGAAAGAAAGCCACG- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_116463.1-303081 302550 105 - 303081 TGTCAACTCTC----TGTCTTCTCAAGCACCAGCACCTGGAGAGGAAGAGTAGGAGGCAGAGTCTCGGGATTCTGCCAGGTGGGGAGTTTCAGGAGAAAGCAAGCCTAT- i otoGar1.scaffold_116463.1-303081 C 0 C 0 s canFam2.chr26 3154849 69 + 42029645 ---------------GGTCCAGGTAGATGCGAGAGCCCGAGCGCAGGACCCGG-------------------------GGCGGGACGGTTCTGGAGAAGCAGAGCTTCG- i canFam2.chr26 C 0 I 1 s felCat3.scaffold_141213 83503 83 - 90490 CGTC-AACCTTCCCACGTCCCCTCAGGTCCAGGTGCCCGAAGGGGAGGACCAG-------------------------AGCAGGGCGCTTCCTGAGAAAGCAAGCCTCT- i felCat3.scaffold_141213 C 0 I 1 s loxAfr3.scaffold_113 85567 92 - 3408981 TGTC-AGGCTC-----------CTACGTATAAGCACCTGAAGACGAGAAACGG--GGCAGACCCCTGGGGTTCT----GTCAGAAAGTTTCAGGAAAAAGAAGGCATATG i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29910899 25 - 76506943 I e equCab2.chr8 64120220 1038 - 94057673 I a score=26351.000000 s hg19.chrUn_gl000223 24538 48 + 180455 TCCCA--AGTCCTGAAAAACACG---GCTGCACTTCACAAAGAAAAGCGGAAA s rheMac2.chr11 158978 48 - 134511895 TCCCA--AGTCCTGAAAAATACG---GCTGCACTTCACAAAGAAAAGAGGAGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 183454 48 - 136387465 TCCCA--AGTCCTGAAAAACACG---GCTGCACTTCACAAAGAAAAGTGGAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 154932 48 - 135371336 TCCCA--AGTCCTGAAAAACACG---GCTGCACTTCACAAAGAAAAGCGGAAA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_116463.1-303081 302655 49 - 303081 ATCCAGGAGTCCTGAAAAGTAAG---GCTG-GCTTCATTAAGAAAAGAGGAAA i otoGar1.scaffold_116463.1-303081 C 0 C 0 s bosTau4.chr17 29910924 32 - 76506943 TCTCA--CGTCC------TCTCA---AGCAC----------GAGAGAGGGAGG i bosTau4.chr17 I 25 C 0 s felCat3.scaffold_141213 83587 41 - 90490 TCCCC--CTATCCTG---ATGCACATGATGCCCT-----GGGAAAGAAAAA-- i felCat3.scaffold_141213 I 1 I 875 s canFam2.chr26 3154919 41 + 42029645 TCCCA--CGGCCCAGAGAACGCA---GCCACATT-----CAGCAAGAAGGA-- i canFam2.chr26 I 1 I 2 s loxAfr3.scaffold_113 85659 46 - 3408981 TCCCA--AACCCTGAAAAACAAG---ATTTCACTTCAGAAAGAAAAGGAAA-- i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=53771.000000 s hg19.chrUn_gl000223 24586 152 + 180455 Caggccaagtgggttggctcacttgaggccaagagtttgaggttacaggatgctatgatcgctccact--------gcctgggcgacaggaggagaccctgt------ctctctctt--------------------------aaaaaaaaaataaaaaTTtatatatatatatatatata----------------tatttatCAAT s panTro2.chr12 154980 166 - 135371336 Caggctaagtgggttggctcacttgaggccaagagtttgaggttacaggatgctatgatcgctccact--------gcctgggcgacaggaggagaccctgt------ctctctctt--------------------------aaaaaaaaaaaaaTtatatatatatatatatatatata--tatatacatttatttatttatCAAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 183502 147 - 136387465 CAGGCTAAGTGGGTTggctcactttaggccaagagtttgaggttacaggatgctatgatcgctccact--------gcctgggcgacaggaggagaccctgt------ctcTCTCTC--------------------------TCTAAAAAAACAa-----tatatatatatatatatata----------------tatatatatat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 159026 202 - 134511895 CAGGCTCAATGGGTTggctcacttgaggccaagagtttgaggttacaggatgctatgatcgccccactgcactccagcctgggcgacaggaggagaccctgt------ctctgtctttcaaagaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatat i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29910956 76 - 76506943 CAGGGCAGGTA------------------CAAGGG-TAGGGGTTACAGG--------------------------------------AGAAGGAAAGCCTGTGTAAACATCTGCATT--------------------------TAGAAGAAAGGAAACA------------------------------------------------- i bosTau4.chr17 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_116463.1-303081 302704 0 - 303081 C e loxAfr3.scaffold_113 85705 0 - 3408981 C e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I e canFam2.chr26 3154960 2 + 42029645 I a score=156239.000000 s hg19.chrUn_gl000223 24738 304 + 180455 CATTAGCTTACCTGAGACATAGCTCACAGAAGGGAAGGAGGAGATCAGAA------AAGTGTAAAATGGCAGACCTGGCAGAGAGAGAAAG------GAGCCCTGAGCGAACAGGCCAGCTAGGCC--GCGCCCAAGTCACTAGAT-TCCCGCACTGGGGAT------TCCCGTGGC------CCCCGCTCCGCGCCTCCCACGTAGAGAG---CAGGGCGCCCTGAGA-GATC-GCGCTT----GGACCACTGGCGCCGGCT-TTCTCTTCCTGCCAC------------------GGCGCGCCTCCCCAGAACCCCCTCACCTAACAGTGGCCACAGAAGGATGCGTTTCCGTGGTG--------------- s otoGar1.scaffold_116463.1-303081 302704 265 - 303081 CATCAGCTCACCTGAGACGTGGCTCACAGAGGGGACCGCAGAGGGCAGGA------GAGTGGAAAACGGCAGACCTGACGGAGAG--AAAG------GAGTCCTGAGTGAACAG--------------GGGCCCGAGTCCC-------CTCGAGCTGGGGGT------TCCCGCAGT----------------CGCCACCAACACAGGGAAG-CTGGAGTGCCCGGAGC-GCCCAGACCTT----GGGTCA-GGGGACCG------------TGACCCC------------------GACCTGCCTCCCCAGCACCATCTCACGTAACCGTGGCCACCGGACGGCAGGTTCCATCGGGG--------------- i otoGar1.scaffold_116463.1-303081 C 0 C 0 s panTro2.chr12 155146 304 - 135371336 CATTAGCTTACCTGAGACATAGCTCGCAGAAGGGAAGGAGGAAATCAGAA------AAGTGTAAAATGGCAGACCTGGCAGAGAGAGAAAG------GAGCCCTGAGCGAACAGGCCAGCTAGGCC--GCGCCCAAGTCACTAGAT-TCCCGCACTGGGGAT------TCCCGTGGC------CCCCGCTCCGCGCCTCCCACGTAGAGAG---CGGGGCGCCCTGAGA-GATC-GCGCTT----GGACCACTGGCGCCGGCT-TTCTCTTCCTGCCAC------------------GGCGCGCCTCCGCAGAACCCCCTCACCTAACAGTGGCCACAGGACGGTGCGTTTCCGTGGTG--------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 183649 303 - 136387465 CATTAGCTTACCTGAGACATAGCTCACAGAAGGGACGGAGGAGATCAGAA------AAGTGTAAAATGGCAGACCTGGCAGACAGAAAAAG------GAGCCCTGAGCGAACGGGCCAGCTAGGCC--GCGCCCAAGTCACTAGAT-TCCCGCACTGGGGAT------TCCCGTGGC------CCCCGCTCCGCGCCTCCCACGTAGAGAG---CGGGGCGCCCTGAGA-GATC-GCGCTT----GGACCACTGGCGCCGGCT-TTCTCTTCCTGTCAC------------------GGCGCGCCTCCCCAGAA-CCCCTCACCTAACAGTGGCCACAGGACGGCGCGTTTCCGTGGTG--------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 159228 296 - 134511895 CATCAGCTTACCTGAGACATAGCTCACAGAAGGGACCGAGGAGATCAG-A------AAGTGTAAAATGGCAGACCTGGCAGAGAG----AG------GAGCCCTGAGCGAACGGGCCAGCTAGGCC--GCGCCCAAGTCACTAGA--TCCCGCACTGGGGAT------TCCCGTGGT------CCCCGCTCCGCGCCTCCCACGTAGAGAG---CGGG--GCCCCGAGA-GAGG-GCGCTT----GGACCACCGGCGCCGGCT-TTCTCCTCCTGCCAC------------------GGCGCGCCTCCCCAGAACCCGGCCACCTAACAGTGGCCACAGGACGGCGCGTTTCCGTTGTG--------------- i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29911032 278 - 76506943 ---CAATTTACCTGCGACATGGCTCAGGGTAGGGCCGGCTGAGAACGTAG----------CGTGGAGGGCAGAGCTGGAGGGGAGAGAAAGAAGCTGAGGCACTG----------CCCGCGGCGCCGTGCGGGCGAACCGG-------GCCGGGCTGGGGGCCAGTCGCTCCGCAAC------CACCGCCCT-CGTC----ACGCAGGATC---AGGGGCGTCCACGACAGCTC-CCTCCTCGCCGCGGCAGGGGCACCC-------------AGCCTG------------------GGCCGG---ACCCGAGGCCGCAGCCTTTAACGG-GGCCGCA-GCTGGGGCATCTCCTCCGCG--------------- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3154962 206 + 42029645 CTGCAACTTACCTGAGACATAGCTCACGGCGGGACGGG--GAAACCGCAGGACCCGGAAAGACAGACGGCAGGACCGGAAAGGAGAGA---------CGGCTCTG-----------CTGCGGCG----GAGAACGAA--------------GCACTGAGCGC--------------------------------------------------------GCGGCTACAGC-GCCC-TCGCCCTCCCGCCCCCTTGGCGCCT------------------------------------------------------CCTTCCCCTTTAGTTG-GGTCACAGGACCGCGCGCTTCCTCGGCG--------------- i canFam2.chr26 I 2 C 0 s loxAfr3.scaffold_113 85705 338 - 3408981 CACCAGCTTACCTGAAACATGGCTCACA--AGGGACCCAGGAAAACCGCA------AAGTCTAAACGGGCACAGCTGGCAGGGAGAGAAAG------GAACCATGAGCGAGCAGGTCATCCTGGCG--GCGCCCGAGGAACGGGGTCCCCCTCGCTGGAGAC------GCTCGTCACACACCCCCACACACCAAGTCGGGGAGCCAGAAGGGCCCCGGGCGCCGGGTGG-GACA-TCGCGC----GG------GGCTCCGGCCGTTCCCTTCCTGCAGGATCTGGGGAGGGAAAGCAAGCCAGCGCTCCCAGCACCTCCGCATTTGGTCGCGGTCACGGAACAGG--GTTTCCGGTCCGGAGCAGTCACTGGCC i loxAfr3.scaffold_113 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 643522 621 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=50047.000000 s hg19.chrUn_gl000223 25042 65 + 180455 CT--TTC----CGCCAGGTGGGCGTAGCGTTCCAGGGCTCCGGACCGAGTCA--------------CCGCCCGGGGCCATCCGGC s rheMac2.chr11 159524 65 - 134511895 CT--TCC----GGCCAGGTGGGTGTCGCGTTCCGGGGCTCCGGACTGAGTCA--------------CCGCCCGGGGCCATCCGGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 183952 65 - 136387465 CT--TTT----CGCCAGGTGGGCGTAGCGTTCCGGGGCTCCGGACCGAGTCA--------------CCGCCAGGGGCCATCTGGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155450 65 - 135371336 CT--TTC----CGCCAGGTGGGCGTAGCGTTCCAGGGCTCCGGACCGAGTCA--------------CCGCCCGGGGCCATCCGGC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_116463.1-303081 302969 55 - 303081 CT--ATT----TGCCAAGT---------GTTTCCAGGCTCCTCCCGGGATGA--------------CCGCCC-CCGCCGTCCGGC i otoGar1.scaffold_116463.1-303081 C 0 n 0 s oryCun2.chrUn0106 644143 65 + 1032594 CT--TTC----CGCCGGGCGGGTGGCCAGCTCCCGGGCTCCGAATCGAGTCA--------------CCGCCACAGGCCACCCAGC i oryCun2.chrUn0106 I 621 C 0 s bosTau4.chr17 29911310 64 - 76506943 CT--GCC----GGCTGGGC-AGCCACGACTTCCAGAGCTCGGGATGAGGCCA--------------CCGCCCTTGGTCACCTCAG i bosTau4.chr17 C 0 I 17 s canFam2.chr26 3155168 59 + 42029645 CC--TCCGGTGGGCGAGGC-GGTCTCGAGCTGCAGACCT---------GCCT--------------TCGGCCCTGGACGCCCAGA i canFam2.chr26 C 0 I 12 s loxAfr3.scaffold_113 86043 72 - 3408981 CTGATCC----CCCAAGGG---------GCTCCGGGGCACGGGCCGGGCCCACAGGCCTTTCACGGCCGGCCGAGAGCGCCAGGC i loxAfr3.scaffold_113 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=55860.000000 s hg19.chrUn_gl000223 25107 130 + 180455 GCAGACCGGGAGGGC-TCCTTTC-GTT------GCCTAC-AGCCA-ACACAGGCCAGACGCTCGG-CGCCGCC-CCC-CAGGGCCCCTCCGCGGGCGTCGCAGGAATTGCGTCTTCAGAAGCCTCGCCGACGTCACCCCAACC--------------------------- s rheMac2.chr11 159589 120 - 134511895 GCAGACCGGG-GTAC-TCCTTTC-CTT------GCCT---------ACACAGGCCAGACGCTCGG-AGCCGCC-CCC-GAGGGCCCCACCGCGGGCGTCGCAGGAA-TGCGTCTTCAGAAGCCTCGCGGACGTCACCCC-ACC--------------------------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184017 130 - 136387465 GCAGACCGGGCGGGC-TCCTTTC-CTT------GCCTAC-AGCCA-ACACAGGCCAGACGCTCAG-CGCCGCC-CCC-CAGGGCCCCACTGCGGGCGCCGCAGGAATTGCGTCTTCAGAAGCCTCGCGGACGTCACCCCAACC--------------------------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155515 130 - 135371336 GCAGACCGGGAGGGC-TCCTTTC-GTT------GCCTAC-AGCCA-ACACAGGACAGACGCTCGG-CGACGCC-CCC-CAGGGCCCCACCGCGGGCGTCGCAGGAATTGCGTCTGCAGAAGCCTCGCCGACGTCACCCCAACC--------------------------- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_86892.1-308627 185590 110 - 308627 GCGAGCCGGG------GCCTCTCACCT------GCCTCC-AGCCAGACGCA-CCTGGACCCCGGG-CTACGTC-CCC-GAGGAC-------------GCGCGGAAA-TGCACCTGC--CAGCCCCTCAGGGACCCACCAGAAC--------------------------- i otoGar1.scaffold_86892.1-308627 n 0 C 0 s oryCun2.chrUn0106 644208 111 + 1032594 ----------GGGGC-TCCCGCC-CCTCCTACCGCCCCG-GACCG-ACGCACGCTA----CTCTG-GACCACA-CCCGGAAGACCGCTCC---AGTGTCTCAGGAATTGTGCCTTCCG-AGCCTCAT--------CCCGGAGC--------------------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29911391 124 - 76506943 TCGGGCAGGGCGGAC-C-CTTCT-CCT------ACCTCG--GTCA-GTACAGGACAG--TTCTTGTCTCTGCA--AC-GGGGACCCCG-AGCCAGAGTCCCGCAAACTGCCCCTTCCGGAGCCTCAGCCACC-GACCGCGACC--------------------------- i bosTau4.chr17 I 17 C 0 s canFam2.chr26 3155239 130 + 42029645 GC-GCCAGAGAGGGC-CGCTTTA-CGT------ACCTCGGAGCCC-ACGCAAGCCAGACTTCCCG-CTCTGCG-TCC-GCGGACTCCGCCGCGAGCCTCCAGCCAACTCCTCCTGCCAGAGCCTCTGGGACCTGACCCCCACC--------------------------- i canFam2.chr26 I 12 C 0 s loxAfr3.scaffold_113 86115 160 - 3408981 ACGGAGAGGGCGGGCGTTCATTA-CCT------GACTCGGGCCCA-AACCGGGCCAGACCCCCGG-CTCCACAGCCC-AAGGACCCCGCCGCCGGCGTCGCGCGGACTGCGCCTTCGGGAGCCTCAGGAACCGGATTCGGAACCAGACCGCCCCGGAGAGCTGCGGGACT i loxAfr3.scaffold_113 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=93612.000000 s hg19.chrUn_gl000223 25237 51 + 180455 AGGCCGCCGGCCTCAAGAAACTACAATTCCCAGAAACCAATGCGGCCCTGC s rheMac2.chr11 159709 46 - 134511895 AGGCCGCCTGCCTCAA-AAACTACAATTCCCAGA----AATGCGGCCCTGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184147 51 - 136387465 AGGCCGCGGGCCTCAAGAAACTACAATTCCCAGAAACCAATGCGGCCCTGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155645 51 - 135371336 AGGCCGCCGGCCTCAAGAAACTACAATTCCCAGAAGCCAATGCGGCCCTGC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_86892.1-308627 185700 49 - 308627 AGGCCGCTGGCCTCAAAGAACTACACTTCCCAGAGGGGACCGCGGCCTC-- i otoGar1.scaffold_86892.1-308627 C 0 C 0 s oryCun2.chrUn0106 644319 47 + 1032594 AGGCTTCGGGCCTCACGAAACTACACTTCCCAGAGAGGACCGCGGCT---- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29911515 49 - 76506943 AGGCCGC-GGCCTCAGACAGCTCTGCTTCCCAGCACCCACCGCGGCC-TCC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3155369 50 + 42029645 AGGCCTTGGGCCTCAGACGACTACACTTCCCAGGACCCACCGCGGCC-TAC i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 86275 51 - 3408981 AGGCCGCCCGCCTGCGACAACTACAACTCCCAGAAGGACGCGCGGCCGTTC i loxAfr3.scaffold_113 C 0 I 301 s choHof1.scaffold_186688 3430 51 - 4453 AAACCCCTGGCCTCAGGCAACTACGATTCCCAGTGCGCCCTGCGGCTGTGC i choHof1.scaffold_186688 N 0 I 5 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=-24794.000000 s hg19.chrUn_gl000223 25288 21 + 180455 GCG---CAAGG------------------GC------TTTTCGTTCCT------------------------- s rheMac2.chr11 159755 27 - 134511895 GCA---CAAGG------------------GCATACGGTTTTCGTTCCT------------------------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184198 21 - 136387465 GCG---CAAGG------------------GC------TTTTTGTTCCT------------------------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155696 21 - 135371336 GCG---CAGGG------------------GC------TTTTCGTTCCT------------------------- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_86892.1-308627 185749 9 - 308627 -CG---TGAGG------------------GA------------------------------------------ i otoGar1.scaffold_86892.1-308627 C 0 I 130 s oryCun2.chrUn0106 644366 11 + 1032594 -------------------------------------GTCTCTCTGCC------------------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29911564 24 - 76506943 GCGCCTCGCGG------------------GC------AGAGAGCCCCC------------------------- i bosTau4.chr17 C 0 I 3 s canFam2.chr26 3155419 21 + 42029645 GGG---GACGA------------------TC------GGGGAGCGCCT------------------------- i canFam2.chr26 C 0 I 7 s choHof1.scaffold_186688 3486 64 - 4453 GCG---CCAGTCTCAGCTAACTACAACTCGC------AGCGAGTTCCGGGACGAACGCCACGGGACTCAGCCA i choHof1.scaffold_186688 I 5 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 86326 301 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e equCab2.chr8 64120220 1038 - 94057673 I a score=119275.000000 s hg19.chrUn_gl000223 25309 97 + 180455 ACTGGAACTCCCAGAGCGCCTCGCTGCCGTGCC-CAGAACGCCAGGAGACA-AAGAACGAGGGCCTGCGACAACTACAATTCCCAGA---------GCCATCGCGGCC s rheMac2.chr11 159782 97 - 134511895 ACTGGATCTCCCAGAGCGCCGCGCTCCCG----------CGCGAGGAAACA-AAGAACGAGGGCCTGGGACAACTACAATTCCCAGAAggccccgcggccccgcggcc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184219 98 - 136387465 ATTGGAACTCCCAGAGCGCCTCGCTGCCGTGCC-CAGAACGCCAGGAGACA-AAGAACGATGACCTGGGACAACTACAATTCCCAGA--------CGCCATCGCGGCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155717 98 - 135371336 ACTGGAACTCCCAGAGCGCCTCGCTGCCGCGCC-CAGAACGCCAGGAGACA-AAGAACGAGGGCCTGGGACAACTACAATTCCCAGA--------CGCCATCGCGGTC i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 644377 96 + 1032594 ACTACAACTCCCAGCCTGCCCCGCGGCCACGCCGCATAGCGCTA----ACGCCAGACCTCGGGCCACAGACGACTACACTTCCCAGA--------CGCCACCGCGGCC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29911591 79 - 76506943 ACGACAACTCCCAGTAAGCCCCGCGCC----CA-CAAGGT-------GAAC-GGGGCC-------TCAAACAACTACACTTCCCAGG--------GTCCACTGCGGC- i bosTau4.chr17 I 3 I 387 s equCab2.chr8 64121258 98 - 94057673 ACTACAACTCCCAAAATGCCCCGCGCCGGAGCT-CATGACGCCTTGAGACA-AAGGCCATTGACCTCAGGTAACTACAACTCCCAGA--------ACGCCCCTCAGCC i equCab2.chr8 I 1038 C 0 s canFam2.chr26 3155447 84 + 42029645 GCTGTGCCTCC-------CCCTGCGCCTGCGCA-CACAGC-------GACA-GAGCCCACGGACGTCAGACGACTACATTTCCCAGG--------ACCCACCGCGGCC i canFam2.chr26 I 7 I 1307 s choHof1.scaffold_186688 3550 98 - 4453 ACTACAACCCCCAGAGCGCTCTGCGGCCACACT-ATAAGCTCACCAGGACG-AAGGCCGCCGGTCGAAGTCAAATAAAACTCCTAGA--------GCGCCCCGTGGCC i choHof1.scaffold_186688 C 0 C 0 s loxAfr3.scaffold_113 86627 92 - 3408981 ------ACTCCCAGAATGCATCGGTGCCGCGTC-GACAGCGCCGGGAGACA-ATGGCCGCCCACCTAGGACAACTACAGTTCCCAGA--------GCCCATAGCGGCC i loxAfr3.scaffold_113 I 301 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 185758 130 - 308627 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I a score=-19623.000000 s hg19.chrUn_gl000223 25406 59 + 180455 CGGTGCGCCAGAGCATAGGGGC------------------------------TATCC---TCCCACGCCCAGAG----CCGAGAAACAAAGAACCC s panTro2.chr12 155815 59 - 135371336 CGGTGCGCCAGAGCATAGGGGC------------------------------TATCC---TCCCACGCCCAGAG----CCGAGAAACAAAGAACTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 184317 60 - 136387465 CGGTGCGCCAGAGCATAGGGCTA-----------------------------TATCC---TCCCACGCCCAGAG----CCGAGAAACAGAGAACTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 159879 57 - 134511895 ccgcgcTCCAGAGCATAGGGC-------------------------------TATCC---TCCCACG-CCAGAG----CCTAGGAACAAAGAACTC i rheMac2.chr11 C 0 C 0 s oryCun2.chrUn0106 644473 52 + 1032594 ---TCCGCTGGGACCAATGTAA------------------------------CATTT---CCCTACCACTACAA----CTC----CCAGAGAGCCC i oryCun2.chrUn0106 C 0 I 1 s equCab2.chr8 64121356 22 - 94057673 -------TGAGACCAAGAGGTC------------------------------CACCC---TC---------------------------------- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 86719 91 - 3408981 -TCCTAGCTAGAAACGGAGGAATCCACCCTCAGAGACCGACGACTCCCAGAATGCATCGGTGCCGCGCCGACAGCGCCCGGAGAAATGGCCG---- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_186688 3648 29 - 4453 -TACCCGCCAG-----------------------------------------TGCGT---------------------CTGAGACACTAACC---- i choHof1.scaffold_186688 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 185758 130 - 308627 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=34290.000000 s hg19.chrUn_gl000223 25465 70 + 180455 GGGTCC-------------TAGGCAACTACATTTCCCAGAAATAACC------GCGG---CCCCCCGCGGAAGAGTACACAGACCTTTGTGT s rheMac2.chr11 159936 70 - 134511895 GGGACC-------------TAGGCAACCACACTTCCCAGAAACAACC------GCGG---CCCCCCGCGGGAGACCACACAGGGCTTTCGGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184377 73 - 136387465 GGGTCC-------------TAGGCAACTACATTTCCCAGAAACAACC------GCGACCCCCCCCCGCGGAAGAGTACACAGGGCTTTGCGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155874 70 - 135371336 GGGTCC-------------TAGGCAACTACATTTCCCAGAAACAACC------GCGG---CCCCCCGCGGAAGAGTACACAGACCTTTGCGT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 13 66 - 5263 GGGCCT-------------CAGACATCTACACTTCC--GGAGTCAGA------GCAG----CTCATGTGGGGGCG-ACGGAGGGCGTTTATT i micMur1.scaffold_51584 N 0 C 0 s oryCun2.chrUn0106 644526 82 + 1032594 GCGGCCACGCCTACGTCGGCAGCCGACTACACTTCCCAGAGCCCACA------GCGG---CCGTCCGCGAGGAAG-GTGAGGGCGTTTGTCC i oryCun2.chrUn0106 I 1 C 0 s equCab2.chr8 64121378 33 - 94057673 --------------------AAACAACTACAATTCCCAGCACCGACT------GCGG---CC------------------------------ i equCab2.chr8 C 0 T 190 s loxAfr3.scaffold_113 86810 69 - 3408981 CCGCCT-------------AGGACAACTACAGTTCCCAGAGCCCACC------GCGT---CCTCCGACCTAGAGA-CGAAGGGCCCCAAGCT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_186688 3677 75 - 4453 CGGGCT-------------CAGACAGTTACAACTCCCAGAGGTCCCCGTGGCTGTGC---CCTGCTGCCCACGAG-CCTAAGATCGCAGTCT i choHof1.scaffold_186688 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 185758 130 - 308627 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=17700.000000 s hg19.chrUn_gl000223 25535 76 + 180455 -----TCCTATAACTGCCAGAGTGTCTCGCGGCCAAGCGCACAACTAGCGGAGAAACGAAGAACGTGGAACTCAGGCCACC s rheMac2.chr11 160006 76 - 134511895 -----TCTTATAACTCCCCGCGTGCCTCTCGGCCACACGCACAACCAGCCGAGAAACGAAGAACGCGGGACTCAGGCAACC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184450 76 - 136387465 -----TCCTACAACTGCCAGAGTGCCTCGCGGCCACGCGAACAACCACCCGAGAAAGGAAGAACGCGGAACTCAGGTAACC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 155944 76 - 135371336 -----TCCTATAACTGCCAGAGTGTCTCGCGGCCACGCGCACAACTAGCCGAGAAACGAAGAACGCGGGACTCAGGCAACC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 79 68 - 5263 -----TCCTACTACG---AGAGTGCTGCACGGTCTCCCCC----CCACCCCAGTGGTTGA-AACGCTGGCCATCGACAAGC i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_86892.1-308627 185888 43 - 308627 -----TCCTGTGACT---CCCGAGCCACGCAG------------------------------AAGCCGTCTGCGGGCAACC i otoGar1.scaffold_86892.1-308627 I 130 C 0 s oryCun2.chrUn0106 644608 68 + 1032594 -----TGTGATACCTGCCGGCGC----CGCGGCGGTGC---CACCGCGCGGGGAGGCAGAGACGGCTGGA-ACAGGAAACC i oryCun2.chrUn0106 C 0 I 1 s loxAfr3.scaffold_113 86879 77 - 3408981 CAAAAAACTACAACTTCCAGGATGACTTGGGACCGTGCCGACTGTG---CCTGAGGC-AAGACCGCCAGTCGGCGACAACT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_186688 3752 80 - 4453 CAGAGGACTACGACTCCCATAGCGCCCAGCGACCGCACAGTTAGCGCCACCGGAAGG-AAGGCAGCCTGTCTCACGTAACT i choHof1.scaffold_186688 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 195475 882 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121411 190 - 94057673 T e canFam2.chr26 3155531 1307 + 42029645 I a score=32847.000000 s hg19.chrUn_gl000223 25611 73 + 180455 ACACTTCCCAGAAA-CA---ACCGCGACCCCGCGCGAGAGAGCAT--------------------------ATGGCTTTCCCCGCC--CCACTGCAACTCCCAGG s rheMac2.chr11 160082 73 - 134511895 ACACTTCCCAGAAA-CA---ACCGCGACCCCGCTGGAGAAAGCAA--------------------------ATGACTTTCCCCGCC--CCACTACAACTCCCAGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184526 71 - 136387465 ACACTTCCCAGAAA-CA---ACCGCGACCC--CGCGAGAGAGCAT--------------------------ATGGCTTTCCCCGCC--TCACTACAACTCCCAGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 156020 73 - 135371336 ACACTTCCCAGAAA-CA---ACCTCGACCCCGCGCGAGAGAGCAT--------------------------ATGGCTTTCCCCGCC--CGACTGCAACTCCCAGG i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 147 96 - 5263 AAACTTCTCAGAGCGCA----CCGCGGCC---TCtgtgcgagtgtgtgtgtgtgtgtgtgAGAGAGAGAGAGAGGGTTTCCTTTCC--CTACTACATCTTCCAGA i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_86892.1-308627 185931 73 - 308627 AGGCTTCCTAAAGC-CAGTGGCGGCGGCC---TGCACCTGAGCCT--------------------------AAAGCTGCCCCTGTC--CAACTGCACTTCCCAGG i otoGar1.scaffold_86892.1-308627 C 0 n 0 s cavPor3.scaffold_248 196357 66 + 667635 ACATTTCCCAGAGA-CC---ATCGCG-----GCGAGTAAAGGAAA--------------------------GGGAGTTTGAGCT----CTACTACAGCTCCCAGC i cavPor3.scaffold_248 I 882 C 0 s oryCun2.chrUn0106 644677 56 + 1032594 ACACTGCCCCGAGG-GC---GCCGCGACCTAGCGCGTGGGGCGAT--------------------------GGGGCGTTTCTCTCC------------------- i oryCun2.chrUn0106 I 1 I 8988 s loxAfr3.scaffold_113 86956 75 - 3408981 GCCGTTCGCAGAAT-CC---ACCACGGCCTCTGCGCATGGAACGC--------------------------AGGGCTCCGCCCGCCGACAACTACAACTCCCAGA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_186688 3832 55 - 4453 ACAACTCCCAGAGA-GC---TCC---------------GGGAGGA--------------------------AGGCCCCTTGACTCGGGCAACTACGACTC----- i choHof1.scaffold_186688 C 0 I 144 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121411 190 - 94057673 T e canFam2.chr26 3155531 1307 + 42029645 I a score=70271.000000 s hg19.chrUn_gl000223 25684 83 + 180455 GTGCTTTGAGGCCAAGCGCACATCATCGAA----AGACAAAGAACACGAGCTTCAGGCAACTACACTTCCCAGAACCTCTAGCGA---CC s rheMac2.chr11 160155 83 - 134511895 GTGCCTTGAGGCCACGCGCACATCACCGAA----AGACAAAGAACACGAGCTTCAGGCAACTACACTTCCCAGAACCTCCTGCGA---CC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184597 83 - 136387465 GTGCTTTGAAGCCATGCGCACATCATCGAA----AGACAAAGAACACGAGCTTCAGGCAACTACACTTCCCAGAACCTCTAGCGA---CC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 156093 83 - 135371336 GTGCTTTGAGGCCAAGCGCACATCATCGAA----AGACAAAGAACACGAGCTTCAGGCAACTACACTTCCCAGAACCTCTAGCGA---CC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 243 84 - 5263 GTACACCGCGGCCGCGCGAACAGCGCCAGT----GGTGCA--AACACGGGCCTCCGACAACTGCAATTCCGAGAGTCCACCACGGCCTCC i micMur1.scaffold_51584 C 0 C 0 s cavPor3.scaffold_248 196423 83 + 667635 GTTCTCCGCGGCCACACCCACCACGCCACA----AAATAAAGTCCGCTTGATGCAGATAACTACTCTTCCCAGGACCACCTGCGG---CC i cavPor3.scaffold_248 C 0 I 766 s loxAfr3.scaffold_113 87031 76 - 3408981 A-----------AGCGCTGCCGTCACTGCACTGGAGACAAAGGGATCCACCCTCAGAAAACCACGGCTTCCAGAACAACCCGGAG---CC i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_186688 4031 84 - 4453 GCGCTCAGCGGCCGCGCTGACGGCACCACCC---GAACGAAGGCCACTGGTCTAAGGCGACTAAAACTCCTCGAGAGCCCCGTGA---CC i choHof1.scaffold_186688 I 144 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121411 190 - 94057673 T e canFam2.chr26 3155531 1307 + 42029645 I a score=54001.000000 s hg19.chrUn_gl000223 25767 100 + 180455 GTGCGCAAAAGA-GCG--------GAGGACGTTCTTCCCC---TACTACGACTCCCAGAGTGCATCGTGGCCACGCC--CAAAGCCG---GAAGACAACG-----CAGAGCTCTGGCGACTA s micMur1.scaffold_51584 327 102 - 5263 CTGCGTGGGAA----G--------GAGTGCGTTTATCTCC---TAATCCGACGCCCAAAGTGACCTGTGGCAACGCCTACAACGCCAAGTGAGGCAAATG-----CCGGCCTCAGACAACTA i micMur1.scaffold_51584 C 0 C 0 s panTro2.chr12 156176 100 - 135371336 GTGCGCAAAAGA-GCG--------GAGGACGTTCTTCCCC---TACTACGACTCCCAGAGTGCATCGTGGCCACGCC--CAAAGCCA---GAAGACCACG-----CAGAGCTCCAGCGACTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 184680 100 - 136387465 CTGTGCAAAAAA-GCG--------GAGGACTTTCTTCCCC---TACTACGACTCCCAAAGTGCATCGCGGCCGCCCC--CAAAGCCA---GAAGACCAGG-----CAGGGCTCTAGCGACTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 160238 100 - 134511895 CTGCGCAAAAGG-GCG--------GAGGACTGTCTTCCCC---TACTACGACTCCCAGAGTGCATCGCGGCCACGCC--CAAAGCCG---GAAGACTATG-----TAGGGCTTTAGCGACTA i rheMac2.chr11 C 0 C 0 s loxAfr3.scaffold_113 87107 105 - 3408981 --GCGCCAACGGTACA--------ATAGCCACCCGCCTCA---GACAACAACTCCCAGAGCTACTTACAGTCCCGGCCATAGAGCCT---GGTGGTAACAGCCA-TTGGTATCAGACACCTA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_186688 4115 117 - 4453 --GTGCCATCAGCGCGTCTGAGTCAAAAACCCCGGCCTCAGGCGACTACAACTCCCACAGCGCCCCGCGGCTGCGCACTCAGTGCCA---CCGGAAGGCAGGCAGCCGGTCTCAAGTAACTA i choHof1.scaffold_186688 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121411 190 - 94057673 T e canFam2.chr26 3155531 1307 + 42029645 I a score=74781.000000 s hg19.chrUn_gl000223 25867 169 + 180455 CATTCCCCCA---------AACTC-CTGCGCC---GCACG-----CCAGAGGGTATAG--GGTTTTCCTCCCCTACTACGACTCCCACAGTGCTTCGC-------------------------------------------------TGGCGTGCACACACGGCCCAGAGACAAGGAACT--GGAGACTCAGGTG-ACTACACTTCCCAGAACACACCGCGGC-CCAGCAAGAGC-CCAAGAC s rheMac2.chr11 160338 170 - 134511895 GATTCCCCCA---------AACTC-CTGCGGC---CCACG-----AGAGAGGGTATAG--GGTTTTCCTCCCGTACTACGACTCCCACAGTGCCTCGC-------------------------------------------------TGGCGTGCACACACCGCCCAGAGACAAGGAACT--GGAGACTCAGGCGAACTACACTTCCCAGAACCCACCGCGAC-CCAACAAGAGC-CCGAGAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184780 169 - 136387465 CATTCCCTCA---------AACTC-GTGCGCC---GCACG-----CGAGAGGGTATAG--GGTTTTCCTCCCCTACTACGACTCCCACAGTGCCTCGC-------------------------------------------------TGGCGTGCACACACCGCCCAGAGACAAGGAACT--GGAGACTCAGGTG-ACTACACTTCCCAGAACACACCGCGGC-CCAGCAAGAGC-CCAAGAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 156276 169 - 135371336 CATTCCCCCA---------AACTC-CTGCGCT---GCACG-----CCAGAGGGTATAG--GGTTTTCCTCCCCTAGTACGACTCCCACAGTGCTTTGC-------------------------------------------------TGGCGTGCACACACCGCCCAGAGACAAGGAGCT--GGAGACTCAGGTG-ACTACACTTCCCAGAACACACCGCGGC-CCAGCAAGAGC-CCAAGAC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 429 171 - 5263 CACTTCCCAG---------AGCCCACTGCAGT---CTCCC-----CGCGTGGG-ATAGTCGGTTTCCCTCCCCTACTACGACTCCCAGAGGGACCT-T-------------------------------------------------TGGC---CACACCCAAAGCATTGGCTATGCCCTACGCCGGCCTCATTA-ACTACAACTCCCAGAGCCGTCTGCGGCGTCGACCTGAGCTTTAGGAC i micMur1.scaffold_51584 C 0 C 0 s equCab2.chr8 64121221 147 - 94057673 CAACCCTCCA---------ACCTCCCCGCACC---CCACA-----C--------ACAC--A----------CACACTACAACTCCCAAAATGCCCCGC-------------------------------------------------GCCGGAGCTCATGACGCCTTGAGACAAAGGCCA--TTGACCTCAGGTA-ACTACAACTCCCAGAACGCCCC------TCAGCCTGAGA-CCAAGAG i equCab2.chr8 T 190 C 0 s loxAfr3.scaffold_113 87212 164 - 3408981 CAGTTCCGAGAGTCAACCTAGCCT-TAGCACCTTGAAAGGAAACCTCCGTTG--TAAG--G-----------CAAATATAATACCCAGAATGCCCTCC---------------------------------------------------TCGCTCCTTCAACGCCTCGAAACGAGGACCT--CGGGA-------A-ACTACAGTTCCCCTAATCCCTCGCGGC-CCAGCGAGCGG-CCAAGAC i loxAfr3.scaffold_113 C 0 I 480 s choHof1.scaffold_186688 4232 186 - 4453 CAACTCCCGGAG-------AGCTC-CGGGAC----AAAGG-----CCCGTGGACACAG--G-----------GAACTATGACTCCCGGAGCGGTCTGCGGCTGTGCTAGCAGCGCCACCGGAAGGAAGGCAGCCGGTATAAAGCAACTACAACTCCCAGAGTGCATCGCAACAAAGGCCC--CGGGACTCAGGCA-ACTACGAGTCCCAGAGAGCCCCG------------------------ i choHof1.scaffold_186688 C 0 N 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=49348.000000 s hg19.chrUn_gl000223 26036 79 + 180455 CGCCTCTATTAAACAACTAGGATTCTTAACAACGACTGTGGAGTCAGTACTTCAGTCTAAGACCTTTtgctactggaaa s rheMac2.chr11 160508 76 - 134511895 CGCAACCATTAAATAACTAGGATACTT---AAAGACTGTGGAGTCAGTACTTCAGTCCAAGACCTTTtgttactggaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 184949 76 - 136387465 CGCCTCTGTTAAACAGCTAGGATTCTT---AACGACTGTTGAGTCAGTACTTCAGTCTAAGACCTTTtgctactggaaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 156445 79 - 135371336 CGCCTCTATTAAACAACTAGGATTCTTAACAACGACTGTGGAGTCAGTACTTCAGTCTAAGACCTTTtgctactggaaa i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 600 79 - 5263 CGCAACCATGAAACAACTACATTTCCCAGAAGCGACCGCGGAGTCAGTGCTTGAGTAAGAAACCTTTGGCCTCAGGTAA i micMur1.scaffold_51584 C 0 I 222 s equCab2.chr8 64121368 57 - 94057673 GTCCACCCTCAAACAACTACAATTCCCAGCACCGACTGCGGCCGTGGCACTTCCATC---------------------- i equCab2.chr8 C 0 C 0 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=42626.000000 s hg19.chrUn_gl000223 26115 81 + 180455 ggggtccggatctcagactctaagagagggttcttggatcttgcacaagaaagaatttgaggcgaatccataaggtgaaag s rheMac2.chr11 160584 81 - 134511895 ggggtctggatctcagactctaagagagggttcttggatctcgcacaagaaagaattcgaggcgaatgcataaagtgaaag i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 185025 81 - 136387465 ggggtccggatctcagactctaagagagggttcttggatcttgcacaagaaagaatttgaggtgaatccataaaatgaaag i ponAbe2.chr12 C 0 I 10 s panTro2.chr12 156524 81 - 135371336 ggggtttggatctcagactctaagagagggttcttggatcttgcacaagaaagaatttgaggcgaatccataaggtgaaag i panTro2.chr12 C 0 C 0 e micMur1.scaffold_51584 679 222 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121425 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=46505.000000 s hg19.chrUn_gl000223 26196 181 + 180455 caagtttattaggaaagtaaaggaataaagaatggctaatccataggcagggcagccccgagggctgctggttgcgcatttttgtggttatttcttgatgatatgctaaacaaggggtggattattcatgcatcctctttttagaccatatagggtaacttcctgacgttgccatagccac s panTro2.chr12 156605 181 - 135371336 caagtttattaggaaagtaaaggaataaagaatggctaatccatagggagggcagccccgagggctcctggttgcgcatttttgtggttatttcttgatggtatgctaaacaaggggtggattattcatgcctcctcttttcagaccatatagggtaacttcctgaagttgccatggccac i panTro2.chr12 C 0 C 0 s rheMac2.chr11 160665 180 - 134511895 caagtttattaggaaagtaaaggaataaagaatggctaatccataggcagggcagccccgaggg-tgctggttgcgcatttttatggttatttctttattatatgctaaacaaggggtggattattcatgcctcctctttctagaccatatagggtaacttcctgatgttgccatggccac i rheMac2.chr11 C 0 C 0 e micMur1.scaffold_51584 679 222 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 185106 10 - 136387465 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121425 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=458910.000000 s hg19.chrUn_gl000223 26377 965 + 180455 tggtgggcagtgaggacaatc--aggtcgttctcatcgc-tatctc----------ggttttagtcggcttctttactgcaacctgttttatcagcaaggtctttatgacctgtatcttgtgccagcctcatgtctcatcctgtgactacgaatgccttaacctccagggaatgctgcccagcaggtctcagccttattttaacca---------gcccctactcaagatagagttgccctggttcaaccgcctctgacagtggaagacgtagcaatgaggacagccagaagtcactctcattgccatcttggttttggtgggttttagccggcttctttactgtaaacttttatcagcaaggtctttatgacctgtgtctcatgctgacctgctgtctcatactgtgagttagaatgcctaacggtcttggaacgcagcccagtatgcctcagccttattttacccagttcttatttaagatggagttgccgggtgctgtggctcatgcctgtaatcccagcactttgggaggctaaggcgggcagatcacctgaggtcaggagtttgcaatcagcctggccaacaggccagagtgtaacctcgtctctactaaaaatacaaaaattacctgggcatggtggtgggtgcctgtattcccagctacttgggaagctgaggcaggagaatcacttgaacctgggaggtggagcttgcagtgagccaagttggcgctactgcactccagcctgggcgacagagtgaggctccatctcaaaaaataaaaataaaaaaaaaaTAC-Aggccgggcgtggtggctcacgcatgtaatcccagcactttgggagactgtggccagcgaatcacaaggtcagaagtttgagaccagcctgacaaacatggtgaaacccca-tctctactaaaaatacaaaaactagctgggcgtggtggtgcacgcctataatcccagctactccggaggctgaga s rheMac2.chr11 160845 966 - 134511895 tggtgggcagtgaggacaatcagaggtcgctctcatcacacatcttggttttggt-gggtttagtcggcttgtttactgcaacctgttttatcagcaaggtgtttatgacacgtattttgtgccaacctcatatctcatcctgtgactaagaatgccttaacctccagggaatgaaggccagcaggtctcagccttattttacccaactctatctacccctactaaagacagagttgccctagttcaaccacctctgacagtggaagttgtagcactgaggacagccagaagtcactctcattgccatcttggttttggtgggttttagccggcttccttactgtaaacttttatcagcaaggtctttatgacctgtatctcatgctgacctcctgtctcatactgtgacttagaatgcctaacagtcttggaacgcagcccagtatgcctcagccttattttacccagctcttgtttaagatggagttgctgggagcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagattacccaaggtcaggagtttgagatcagcctggccaacatg-----gtgaaacctcatctctactaaaaatacaaaaattagccgggtgtggtagcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaagcggaggttgctgtgagccaagatcttggcattgcactccagcctgggcaacatagtgaaactgtgtctcaa-----aaaaacaaa--------aCAAggccaagcgtggtggctcacgcctgtaatcccaccactttgggaggctgtggctggcggatcatgaggtcaggagtttgagaccagcctgaccgacatgatgaaacccca-tc---actaaaaatagaaaaattagccgggcatggtggtgcgcacctgtaatcccagctactcaggaggctgaga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 185116 972 - 136387465 tggtgggcagtgaggacaatcagaggtcgctctcattgc-tatctcggttttgatgggttttagttggcttctttactgcaacctgttttatcagcaaggtctttatgacctgtatcttgtgccaacctcatgtctcatcctgtgactaagaatgccttaacctcctgggaatgccgcccagcagatctcagccttattttaacca---------gcccctactcaagatagagttgccctggttcaaccgcctctgacagtggaagatgtagcagtgaggacagccagaagtcactctcattgccatcttggttttggtgggttttagccagcttttttactgtaaacttttatcagcaaggtctttatgacctgtgtctcatgctgacctgctgtctcatactgtgagttagaacgcctaacggtcttggaacgcagcccagtatgcctcagccttattttacccagttcttatttaagatggagttgccaggcgcagtggctcgcgcctgtaatcccagcactttgggaggctaaggcgggcagatcacctgaggtcaggagtttgcgatcagcctggccaacatg-----gtgaaacctcctctctactaaaaatacaaaaattacctgggcatggtggtgggcgcctgtaatcccagctacttgggaagctgtggcaggagaatcacttgaacctgggaggtggagcttgcagtgagccgagttggcgccactgcactccagcctgggcgacagagcaagactccgtctcaaaaa--aaaaattaaaaaaaaaTACAAggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgtggccggcgaatcacaaggtcagaagtttgagaccagcctgacaaacatggtgaaaccccattctctactaaaaatacaaaaattagctgggcctggtggtgcatgcctgtaatcccagctactccggaggctgaga i ponAbe2.chr12 I 10 C 0 s panTro2.chr12 156786 942 - 135371336 tggtgggcagtgaggacaatc--aggtcgttctcatcgc-tatctc----------ggttttagtcggcttctttactgcaacctgttttatcagcaaggtctttatgacctgtatcttgtgccagcctcatgtctcatcttgtgactaagaatgccttaacctccagggaatgccgcccagcaggtctcagccttattttaacca---------gcccctactcaagatagagttgccctggttcaaccgcctctgacagtggaagatgtagcagtgaggacagccagaagtcactctcattgccatcttggttttggtgggttttagccggcttctttactgtaaacttttatcagcaaggtctttatgacctgtgtctcatgctgacctgctgtctcatactgtgagttagaatgcctaacggtcttggaacgcagcccagtatgcctcagccttattttacccagttcttatttaagatggagttgccgggcgctgtggctcacgcctgtaatcccagcactttgggaggctaaggcgggcagatcacctgaggtcaggagtttgcaatcagcctggccaacaggccagagtgtaaccttgtctctactaaaaatacaaaaattacctgggcatggtggtgggtgcctgtaatcccagctacttgggaagctgaggcaggagaatcacttgaacctgggaggtggagcttgcagtgagccaagttggcgctactgcactccagcctgggcgacagagtgaggctccatctcaaacaataaaaaTTAA--------------------gtggtggctcacgcatgtaatcccagcactttgggagactgtggctagcggatcacaaggtcagaagtttgagaccagcctgacaaacatggtgaaacccca-tctctactaaaaatacaaaaactagctgggcgtggtggtgcacacctataatccc----actccggaggctgaga i panTro2.chr12 C 0 C 0 e micMur1.scaffold_51584 679 222 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_86892.1-308627 186004 0 - 308627 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121425 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=84175.000000 s hg19.chrUn_gl000223 27342 197 + 180455 caggagaattgcttgaacctgggaggcgaaggttgtagtg-agctgagatcgcgctattgcactccagcctgggcgaaagagcgagactgtgtcaaaaaaaaaaaaagagcaaaaCAACAACAACAAATAA----------AATAAAAA-AcaagatggagttgctctgattcaagcacccctgaTGCTTTGGCTTCGTATAACTGTAA s panTro2.chr12 157728 189 - 135371336 caggagaattgcttgaacctgggaggcgaaggttgtagtg-agctgagatcgcgctattgcactccagcctgggcgaaagagcgagactgtgtc-----aaaaaaaagagcaa---aacaacaacaaataa----------aATAAAAA-AcaagatggagttgctctgattcaagcacccctgaTGCTTTGGCTTCGTATAACTGTAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 186088 204 - 136387465 caggagaattgcttgaacctgggagacgaaggttgtagtg-agctgcgatcgcgccattgcactccagcctgggcgaaagagcgagactgtgtc---aaaaaaaaaaGCCCAAAACAACAACAACAaataataataataataataataa-AcaagatggagttgctctggttcaaggacctctgacGCTTTCTCTTCATATAACTGTAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 161811 192 - 134511895 caggagaattgcttgaacctgggaggtgaaggttgcagtg-agctgagatggtgccattgcactccagcctgggcgacagagcgaggctgt-tc-------aaaaaaCAACAA--CAACAACAGCAAATAA------TGATAATAAAAACAcaagatggagttgctctggttcaaacacctctgacaCTTTGGCTTCGTATAACTGTAA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_55677.1-5025 2933 118 + 5025 caggagactcgcttgaggccaggagttggaggttgctgtgtagcagtga---agccatggcactctgcccagggagatagcttgaggctccgtc-----tcaaaacaaaacaa---aacaa-aacaaaCT------------------------------------------------------------------------------- i otoGar1.scaffold_55677.1-5025 n 0 n 0 e micMur1.scaffold_51584 679 222 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121425 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=77170.000000 s hg19.chrUn_gl000223 27539 135 + 180455 TAACCAGAATCCTTGCAACGCTCCCAGGTCACCTTGAAACAGTGGTCTCAGAGGA-TGTGACT--CCGAGTCCCTCGTGGCCTTATGGAGCGGCCCAGTCTCTACT----TGGTACCGGCACAGCCA--TGGCTTCTCCCTCTG s rheMac2.chr11 162003 134 - 134511895 TAACCAGAATCGGTGCAACACTCCCTGGCCACCTTGAAACAGTGGTCTCAGAGGA-TGCGACC--CCGAGTCCCCTGTGGCCTTATGGA-CGACCCCGACTGTACC----TGGTACTGGCACAGCCA--CGGCTTCTCCCTTTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 186292 135 - 136387465 TAACCAGAATCCTTGCAATGCTCCCAGGTCGCCTTGAAACAGTGGTCTCAGAGGA-TGTGACT--CCGGGTCCCTCGTGGCCTTATGGAGCGACCCAGTCTCTACC----TGGTACCGGCACAGCCA--CAGCTTCTCCCTTTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 157917 135 - 135371336 TAACCAGAATCCTTGCAACGCTCCCAGGTCACCTTGAAACAGTGGTCTCAGAGGA-TGTGACT--CCGAGTCCCTCGTGGCCTTATGGAGCGGCCCAGTCTCTACT----TGGTACCGGCACAGCCA--CGGCTTCTCCCTCTG i panTro2.chr12 C 0 C 0 s proCap1.scaffold_3638 25441 143 + 75197 TAACCAGAATCTCTCCCTCCTTCCCTCGGCGCCCCGAAACACTGACGTCAGAGAACTACAACTCCCCTAACCCCTGGCGGCCCTGC-GAGCAGCCGGGACCCATCCAGCGCGGGGCCGGGACCGTCAAGCGGCTTCCCCGTTTA i proCap1.scaffold_3638 N 0 C 0 e micMur1.scaffold_51584 679 222 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e equCab2.chr8 64121425 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=-1321.000000 s hg19.chrUn_gl000223 27674 23 + 180455 GGATTCCCCCAGCCTCGAGCAGT s panTro2.chr12 158052 23 - 135371336 GGATTCCCCCAGCCTCGAGCAGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 186427 14 - 136387465 GGATTCCCCCCGCC--------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 162137 3 - 134511895 GGA-------------------- i rheMac2.chr11 C 0 I 15 s equCab2.chr8 64121425 23 - 94057673 GGACACCCGCAGCCTCCGACAAT i equCab2.chr8 C 0 I 2 s proCap1.scaffold_3638 25584 16 + 75197 ------GTGAAGCCAGGAACTG- i proCap1.scaffold_3638 C 0 C 0 e micMur1.scaffold_51584 679 222 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=31069.000000 s hg19.chrUn_gl000223 27697 66 + 180455 CTCTGAGCAGTCTCA--TGTTAC-----------CTGAGAAGGA--------ACGCTGGAGCGGCCCTGGTTTTTCATGTGCTCCAG s rheMac2.chr11 162155 72 - 134511895 CCTTGAGCAGTCTCA--TGTTAC-----------CTGAGAAGGAA--GGCAGACGCTGGAGCGGCCCTGGTTTTTCATGTGCTCCAG i rheMac2.chr11 I 15 C 0 s ponAbe2.chr12 186441 66 - 136387465 CCTCGAGCATTCTCA--TGTTAC-----------CTGAGAAGGA--------ACGCTGCAGCGGCCCTGGTTTTTCATGTACTCCAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 158075 66 - 135371336 CTCCGAGCAGTCTCA--TGTTAC-----------CTGAGAAGGA--------ACGCTGGAGCGGCCCTGGTTTTTCATGTGCTCCAG i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 901 57 - 5263 -----------------TGTTGC-----------CAGAAAATGAA--CACAGCTGCCAGGGTGGCCCTGGTTTTTCGGACGCCAGAG i micMur1.scaffold_51584 I 222 C 0 s equCab2.chr8 64121450 83 - 94057673 TCCTAACGAGATGCAGTTGTCACAGACCCTCGGGCTGAG--GGAA--CACAGCCCCGAGGGCGGCCCCGGCTCCTCACGCTCCCGGG i equCab2.chr8 I 2 C 0 s proCap1.scaffold_3638 25600 58 + 75197 ------------------GGTTC-----------CGGTGAAAGGACGCGCGACCCCGCGGATGGCTCTGTTTCCTACTGTGTGTTGG i proCap1.scaffold_3638 C 0 I 364 e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=31043.000000 s hg19.chrUn_gl000223 27763 35 + 180455 CTCGAGCCCTCCCCCAGAAGCCTTCTGGAAAGAGG s rheMac2.chr11 162227 35 - 134511895 CTCGAGCCCTCCCCCAGAAGCCTTCTGGAAAGAGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 186507 35 - 136387465 CTCGAGCCCTCCCCCAGAAGCCTTCTGGAAAGAGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 158141 35 - 135371336 CTCGAGCCCTCCCCCAGAAGCCTTCTGGAAAGAGG i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 958 33 - 5263 CTCGATCC--GCCTGAGAAGCTCTCTGGAAAGAGG i micMur1.scaffold_51584 C 0 I 227 s equCab2.chr8 64121533 32 - 94057673 CTCTGACCCGCCCT--GAAGCCCTGCGGAAAGAG- i equCab2.chr8 C 0 C 0 e proCap1.scaffold_3638 25658 364 + 75197 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=80009.000000 s hg19.chrUn_gl000223 27798 142 + 180455 CGCTGGATTGCACCTACAGGGGCTGGACGCCCAGTGACCTGGGGGCGCCTCTACTCCCAGCATTGTGTGGGGCACTGTCCTGGGCACGTAGGAGAGGTTTTGGGGAAGCAAGCCAGTCACATCCCTGTGCTTGAAGAGCACC------------------------------ s panTro2.chr12 158176 142 - 135371336 CGCTGGATTGCATCTACAGGGGCTGGACGCCCAGTGACCTGGGGGCGCCTCTACTCCCAGCATtgtgtggggcactgtcctgggcacgtaggagaggttttggggaagcaagccagtcacatccctgtccttgaagagcACC------------------------------ i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 186542 142 - 136387465 CACTGGATTGCATCTACAGGGGCTGGACACCCAGTGACCTGGGGGCGCCTGTACTCCCAGCGTTGTGTGGGGCACTGTCCTGGGCACATAGGAGAGGTTTTGGGGAAGCAAGCCAGTCACATTCCTGTCCTTGAAGAGCACC------------------------------ i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 162262 136 - 134511895 CACTGGAT-----CTACAGGGGCTGGACGCCCAGTGACCTGGGAGCGCCTTTACTCCCAACGTTGTGTGGGGCACTGTCCTGGGCATGTAGGAGAGG-TTTGGGGAAGCAAGCCAGTCACATCCCTGTCCTTGAAGAACACC------------------------------ i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64121565 156 - 94057673 ----------CAGCTAAAACGGCTGCGCGGCGAGTGACCCGAGGGCGCCTTTCGCCTTGG---TGCGCGGGACGCTGTCCCGGG-ACACGGCGGGGGTCT--GGGGAGCGAGTCGGACCCCTCCCTGCCGGCGAAGAGCTCGGAGTCTGAGTGGGCGGGAGGCGGGGCGACA i equCab2.chr8 C 0 C 0 e proCap1.scaffold_3638 25658 364 + 75197 I e micMur1.scaffold_51584 991 227 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e loxAfr3.scaffold_113 87376 480 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29911670 387 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=24563.000000 s hg19.chrUn_gl000223 27940 40 + 180455 AACTGTATGCTGAAAT-ACGAGGTTAGGGAAGAGTCAACCC s equCab2.chr8 64121721 41 - 94057673 AAGCTTGTACTGAAACGAAGCGGTTAGGAAAGAGTCGGCCC i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29912057 41 - 76506943 AGCTTTGTATTGAGATGGGAAGGTTAGGAGAGATTAGGCCC i bosTau4.chr17 I 387 C 0 s rheMac2.chr11 162398 33 - 134511895 AA-------CTGAAAT-ACGAGGTAAGGGAAAACTCAACCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 186684 40 - 136387465 AACTTTATGCTGAAAT-ATGAGGTTACAGAAGAGTCAACCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 158318 40 - 135371336 AACTGTATGCTGAAAT-ACGAGGTTAGGGAAGAGTCAACCC i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 87856 36 - 3408981 -ACCGTATATT-AAAC-ATGAGGATTTAGTAG--TTGGCCG i loxAfr3.scaffold_113 I 480 C 0 e proCap1.scaffold_3638 25658 364 + 75197 I e micMur1.scaffold_51584 991 227 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e canFam2.chr26 3155531 1307 + 42029645 I a score=94574.000000 s hg19.chrUn_gl000223 27980 68 + 180455 ACTGAATCAAAGGAGTATTGTTCCAGATCGAG-AGAACAGTTTATGAAAA------AGAG------AGACAAAAAAGAAAA s panTro2.chr12 158358 68 - 135371336 ACTGAATCAAAGGAGTATTGTTCCAGATCGAG-AGAACAGTTTATGAAAA------AGAG------AGACAAAAAAGAAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 186724 68 - 136387465 ACTGAATCAAAGAAGTATTGTTCCGGGTCGAG-AGAACAGTTAATGAAAA------AGAG------AGACAAAAAAGAAAA i ponAbe2.chr12 C 0 I 2 s rheMac2.chr11 162431 68 - 134511895 ACTGAGTCAAAGGAGTATTGTTCCAGATCAAG-GGAACAGTTTATGAAAA------AGAG------AGACAAAAAAGAAAA i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29912098 72 - 76506943 ACTGAATC-AGGGAACCTTATGCTAGGTAGAGCTGAACAGTTTATGAAAA------AAGA--TTAGAGACAAGAAAGAAAA i bosTau4.chr17 C 0 I 12784 s equCab2.chr8 64121762 73 - 94057673 ACTCAATC-Agggaagattactccaggtggag-ggaacagtttgtgagaa------caggacttggaggcaggaaagaaAA i equCab2.chr8 C 0 I 2 s loxAfr3.scaffold_113 87892 67 - 3408981 ACTGAATC-AGGGACTGTTGTTCCAAGTGGAG-AAAACCGTTTATGAAAA------AGAC------AGGCAAGGAATAAGA i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_3638 26022 73 + 75197 ACTAAATC-AGGGAATGTTGTTTGGAGCGGAA-GGACCAGTTTATAAAGAGGACTTAGAC------AGGCAAGGAATAAAA i proCap1.scaffold_3638 I 364 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e felCat3.scaffold_141213 83628 875 - 90490 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e canFam2.chr26 3155531 1307 + 42029645 I a score=51902.000000 s hg19.chrUn_gl000223 28048 56 + 180455 -AGCCCATTATACAAAATGGAA-GAGGGCAAAAAAA--GAGGAAATTCACTGGCCTGGTG s panTro2.chr12 158426 56 - 135371336 -AGCCCATTATACAAAATGGAA-GAGGGCAAAAAAA--GAGGAAATTCACTGGCCTGGTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 186794 56 - 136387465 -AGCCCATTATACAAAATGGAA-GAGGGCAAAAAAA--GAGGAAATTCACTGGCCTGGTG i ponAbe2.chr12 I 2 C 0 s rheMac2.chr11 162499 56 - 134511895 -AGCCCATTATACAAAATGGAA-GAGGGCAAAAAAA--GAGGAAATTCACTGACCTGGTG i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29924954 57 - 76506943 -AGTCCAGTATAAAAACTGGAA-GAGAAAAGAGGGACCA-AGAAATTCACTGGCCTGTTT i bosTau4.chr17 I 12784 I 27 s equCab2.chr8 64121837 55 - 94057673 -GGCCCATTGTAAAAACTGGAA-GACGGTAAAAAGA--A-AGAAATTCACTGGCCTGGTG i equCab2.chr8 I 2 I 850 s felCat3.scaffold_141213 84503 28 - 90490 -----------------TGAAA-GAGGGCAAAAGAG--A-AGTAGTAAG----------- i felCat3.scaffold_141213 I 875 C 0 s loxAfr3.scaffold_113 87959 44 - 3408981 AGGTCCAGTA---AAGGTGACA-GAGAAAAAAAAAA--A----------TTGACCTGGTG i loxAfr3.scaffold_113 C 0 I 24 s proCap1.scaffold_3638 26095 45 + 75197 AGGCCTAATA---AAGATGAAAGGAGCAGGGGGAAA--A----------ATGGCCTGGGG i proCap1.scaffold_3638 C 0 I 26 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e canFam2.chr26 3155531 1307 + 42029645 I a score=137749.000000 s hg19.chrUn_gl000223 28104 93 + 180455 AAAAGACATGAGACTG-AAAA-----------------AAAAGTCCTTGTGAAGGAGCTTGGATGTCGCTCAGTAAGCTA--GGAAGACACATTAAAATTCGAAGGAGGATGT s panTro2.chr12 158482 93 - 135371336 AAAAGACATGAGACTG-AAAA-----------------AAAAGTCCTTGTGAAGGAGCTTGGATGTCGCTCAGTAAGCTA--GGAAGACACATTAAAATTCGAAGGAGGATAT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0597715 3816 93 - 4986 AAAAGACATGAGACTG-AAAA-----------------ACAAGTCCTTGTGAAGGAGCTTGGATGTCGCTCAGTAAGCTA--GGAAGACACATTAAAATTCGAAGGAGGATGT i gorGor1.Supercontig_0597715 N 0 C 0 s ponAbe2.chr12 186850 93 - 136387465 AAAAGACATGAGACTG-AAAA-----------------AAAAGTCCTTGTGAAGCAGCTTGGATGTCGCTCATTAAGCTG--GGAAGACACATTAAAATTCGAAGGAGGATGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 162555 94 - 134511895 AAAAGACAGGAGACTGAAAAA-----------------AAAAGTCCTTGTGAAGGCGCTTGGATGTCGCTCAGTAAGCTG--GGAAGGCCCATTAAAATTCTAAGGAGGATGT i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29925038 99 - 76506943 AAAAGAGAAGAGACTG-AAAA-----AGTTAATGCTTCACAAGGACATGTGAAGGAACATGCATGCTGTG-AATGA-------GAAGACAATGAGGAGTTCTGAAGAGGCTGT i bosTau4.chr17 I 27 I 123 s equCab2.chr8 64122742 88 - 94057673 AAAAGAGAAAAAACTG-AAAA-----AGCAA-------GCAAGGCCTTGTGAAAGACTTGGCATGTTGTGCAATGA-------GAAGACATTGAAGTCG--TAAGGAGGG--- i equCab2.chr8 I 850 C 0 s felCat3.scaffold_141213 84531 90 - 90490 AAAAGAAATGAGACTG-AAAA-----AGTAA-------GCAAGTCACTGTGGGGGAACTTGCGTATTTTGCAATGA-------GAAGACACTGAAGAAGTTTAAGGAATG--- i felCat3.scaffold_141213 C 0 C 0 s loxAfr3.scaffold_113 88027 100 - 3408981 GAAAGAAACGAGGCTG-AAGA-----GGTAA-------GCAAGGCTTCATGAAGGGACTTGGATGTGACTCAGTGAGCAAGGGGAAGACGCTGAAGAGTTTTAAAGAGTATGA i loxAfr3.scaffold_113 I 24 C 0 s proCap1.scaffold_3638 26166 95 + 75197 GAAGGCAATGACGCTG-AAAACGCTGGCTAA-------CGAAAGCTTCATGAAGGAGCTTAGCTGTGGTTCAGTAAGGAAGGGGAAGACACTG----------AAGAGTGTGA i proCap1.scaffold_3638 I 26 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e canFam2.chr26 3155531 1307 + 42029645 I a score=86140.000000 s hg19.chrUn_gl000223 28197 147 + 180455 GCGTAA-------TCAT-----ATTTGCATTCCACAGCCT-GTGTTC--ATGGTGAACTGAAGGGAA-----------------GAAGGCCACTAGGGGC--AATAGT---TAAATG--TTCTGGAAACTAATCTGAACTGTTGCAGAGAATGGATTGAGGGGAATGAGTT-AAGAAACAATTTAAg s panTro2.chr12 158575 147 - 135371336 GCGTAA-------TCAT-----ATTTGCATTCCACAGCCT-GTGTTC--ATGGTGAACTGAAGGGAA-----------------GAAGGCCACTAGGGGC--AATAGT---TAAGTG--TTCTGGAAACTAATCTGAACTGTGGCAGAGAATGGATTGAGGGGAATGAGTT-AAGAAACAACTTAAT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0597715 3909 145 - 4986 GCGTAA-------TCAT-----ATTTGCATTCCACAGCCT-GTGTTC--ATGGTGAACTGAAGGGAA-----------------GAAGGCCACTAGGGGC--AATAGT---TAAGTG--TTCTGGAAACTAATCTGAACTGTTGCAGAGAATGGATTGAGGGGAATGAGTT-AAGAAACAATTTA-- i gorGor1.Supercontig_0597715 C 0 N 0 s ponAbe2.chr12 186943 147 - 136387465 GCGTAA-------TCAT-----ATTTGCATTCTACAGCCT-GTGTTC--ATGGTGAACTGAAGGGAA-----------------GAAGGCCACTAGGGGC--AATAGT---TAAATG--TTCTGGAAACTAATCTGAACTGTTGCAGAGAATGGATTGAAGGGATTGAGTT-AAGAAACAATTTAAg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 162649 140 - 134511895 GTATAA-------TCAT-----ATTTGCATTCCACTGCCC-GTGTTC--ATGGTGAACTGAAGGGAA-----------------GAAGGCCACTAGGGGC--AATAGT---TAAATA--TTCTGGAAACTAATCTGAACTGGTGCAGAGAATGGATTGAGGGGATTTATTT-GAGAAACA------- i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64122830 157 - 94057673 --GTAAGATATAGTCAT-----ATTTGCGTTCTAGTGCCCGGTGTTA--AGGGTAAATTGAAGGGAAGG-AGGACTTGAGCCAGGAAGGCCAATGAAGGTGAAATAGTAGCTCTGTC--TTCTGGAGACTGATCAGAACTAGTGCATGG---GGGTTAGGGGAGACTGATTC--------------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141213 84621 144 - 90490 --GTA--------TCATC----ATTTGCACTCTAGTGCCTAGTGTTA--AGGGTGAATTGAAGGGAAGG-AAAATTTGAGCCAGGATGGCCAACGAAGGC--AATAAT-TTTGTGTG--TTCTGG----------GAACTAATGCATGG---GAATTAGGGAAAACTGATGCAAGAAAC-------- i felCat3.scaffold_141213 C 0 C 0 s loxAfr3.scaffold_113 88127 63 - 3408981 -----------------CAGTCATTTGCATTGTAGTGGGTAGTGTTA---------------ggaaattctgg---tggcttag---------------------------tgggta----------------------------agag-----------ctaa----------------------- i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_3638 26261 150 + 75197 -----------------CCAGTACTTGTATTGTAGTGCGTAGGGTCACAATGGTGAAC----GGGAAGCCAGGACTTGAGCCAGGAAGGCCAGTGAGGG--CACCAGC---TGTGTATTTTCCAGACTATGATTTCAGTTTCTGCAGAG-----------GAAATTTCATTCAGGAAACAATGTAAC i proCap1.scaffold_3638 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29925137 123 - 76506943 I e canFam2.chr26 3155531 1307 + 42029645 I a score=17452.000000 s hg19.chrUn_gl000223 28344 110 + 180455 gccaggcgtggtggctcacgcttgtaatcccagcactttgggaggctgaggtgggcggatcacgaggtcaggagttcgagaccagcttggccaacacagtgaaacccaat s panTro2.chr12 158722 110 - 135371336 gccaggcgtggtggctcacgcttgtaatcccagcactttgggaggctgaggtgggcggatcacgaggtcaggagttcgagaccagcttggccaacacagtgaaacccaat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 187090 110 - 136387465 gccaggtgtggtggctcacgcttgtgatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagttcgagaccagcttggccaacacagtgaaacccaat i ponAbe2.chr12 C 0 C 0 s felCat3.scaffold_141213 84765 10 - 90490 ------------------------------------ttt----------------------------------------------------------------acctaag i felCat3.scaffold_141213 C 0 C 0 s loxAfr3.scaffold_113 88190 58 - 3408981 -------------------------------------------ggct-------gctaaccaaaaggtcggcagttggaatcca-ccaggccctcctag-gaaaccatat i loxAfr3.scaffold_113 C 0 I 159 e proCap1.scaffold_3638 26411 0 + 75197 C e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 162789 0 - 134511895 C e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29925137 123 - 76506943 I e equCab2.chr8 64122987 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=38610.000000 s hg19.chrUn_gl000223 28454 163 + 180455 ctctactaaaaatacaaaaatcagctgggcgtggtggcgcgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcagtgagccgagatcataccattgcactccagcctgggtgacagagctagactc s felCat3.scaffold_141213 84775 81 - 90490 ctttgcgccaaacatg----------gggcttga------------------------actcacaaccctgaaatgagagagccacatgctctatgg-------------actgagcc-----------------------------------agccaggcac i felCat3.scaffold_141213 C 0 C 0 s ponAbe2.chr12 187200 163 - 136387465 gtctactaaaaatacaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgctttaactcaggaggcagaggttgcagtgagccgagatcgtgccattgcactacagcctgggtgacagagctagactc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 158832 163 - 135371336 ctctactaaaaatacaaaaatcagctgggcgtggtggcgcgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactcaggaggcagaggttgcagtgagccgagatcgtgccattgcactccagcctgggtgacagagctagactc i panTro2.chr12 C 0 C 0 e proCap1.scaffold_3638 26411 0 + 75197 C e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e loxAfr3.scaffold_113 88248 159 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 162789 0 - 134511895 C e cavPor3.scaffold_248 196506 766 + 667635 I e bosTau4.chr17 29925137 123 - 76506943 I e equCab2.chr8 64122987 0 - 94057673 C e canFam2.chr26 3155531 1307 + 42029645 I a score=5711.000000 s hg19.chrUn_gl000223 28617 44 + 180455 tgtctc---aaaaaaaaaaaaaaCCATTTAA----AGGGAGAATCTAAAGG s panTro2.chr12 158995 47 - 135371336 tgtctcaaaaaaaaaaaaaaaaaCCATTTAA----AGGGAGAATCTAAAGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 187363 44 - 136387465 cgtctc---aaaaaaaaaaaaaaCCATTTAA----ACGGAGAATCTAAAGG i ponAbe2.chr12 C 0 C 0 s felCat3.scaffold_141213 84856 34 - 90490 ccTC-------------AAGAAACAATTTAA----AGGAAGAATCTAAGGG i felCat3.scaffold_141213 C 0 C 0 s loxAfr3.scaffold_113 88407 46 - 3408981 TACTGC---AAAGAAAATGGAGGAAATTTTATTCCAGAAACTATTTAGA-- i loxAfr3.scaffold_113 I 159 C 0 s cavPor3.scaffold_248 197272 25 + 667635 --------------------AAA--ATTTAA----AGGAAGAATCTAAAGG i cavPor3.scaffold_248 I 766 C 0 s tarSyr1.scaffold_146431 1698 3 + 6863 ------------------------------------------------AGA i tarSyr1.scaffold_146431 N 0 C 0 s rheMac2.chr11 162789 22 - 134511895 -------------------------ATTTAA----AGGGAGAATCTAAAGG i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3156838 12 + 42029645 ---------------------------------------AGAATCCAGGGG i canFam2.chr26 I 1307 C 0 s equCab2.chr8 64122987 27 - 94057673 -----------------AAGAAACAATTTAA----AGGAAGAATCTAA--- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29925260 30 - 76506943 -----------------AAGAAAATATTTAA----AGGAAGAACTTAAAGG i bosTau4.chr17 I 123 C 0 e proCap1.scaffold_3638 26411 0 + 75197 C e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=175418.000000 s hg19.chrUn_gl000223 28661 79 + 180455 ACTGGGTGATGAATTGGATATCATCCAATTAGATGGAAGGGAAGGAAGAGCTAAGTTTCTTGTTTGGGTGAT--------ATGTTCA s panTro2.chr12 159042 79 - 135371336 ACTGGGTGATGAATTGGATATCATCCAATTAGATGGAAGGAAAGGAAGAGCTAAGTTTCTTGTTTGGATGAT--------ATGTTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 187407 79 - 136387465 ACTGGGTGAGGAATTGGATATCATCCAATTAGATGGAAGGGAAGGAAGAGCTAAGTTTCTTGTTTGGGTGAT--------ATGTTCA i ponAbe2.chr12 C 0 C 0 s bosTau4.chr17 29925290 73 - 76506943 ACCTGGTAATGAATTGGACAT------GGCAGACTGGGGAGATGGAGGAAGTAGGTTTCTTACTTGGGTGAA--------ATGTTGC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64123014 68 - 94057673 -----GTAATGACATGGATAT------GGTAGATGGGAGAGAAGGAGGAGCTAGGTTTCTTGCTTGGGTGAA--------ATGTTTC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141213 84890 69 - 90490 ACCTGGTAATTAATTGGATAT------GACAGGAG----AAAAGGAAGAGCTAGCTTTCTTGCTTGGGTTAA--------ATGTTCC i felCat3.scaffold_141213 C 0 C 0 s canFam2.chr26 3156850 73 + 42029645 ATCTGGATATGAACTGGAAAT------AGCAGGTGGAACAGAAGGAGGATTGAGGTTTCTTGCTGTGGTGAA--------ATGTTGC i canFam2.chr26 C 0 C 0 s rheMac2.chr11 162811 79 - 134511895 ACTGGGTGATGAATTGGATATCATCCAATTAAATAGAAGGGAAGGAAGAACTAAGTTTCTTGTTAGGGTGAT--------ATGCTCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_146431 1701 72 + 6863 ACTGGGT-ATAAATTGACTAT------GGTAGATGGAAAGGAAGGAAGAGCAAAGTTTTTAAATTGAGTGAT--------AGGCTTG i tarSyr1.scaffold_146431 C 0 C 0 s cavPor3.scaffold_248 197297 72 + 667635 GCCGGGTTATGAATTAGGTGT------GGTAGTTA---------GAAGACTTTAGTTTCTTGCGTGGGTGGTGTTTCTAGAGGTTCA i cavPor3.scaffold_248 C 0 I 126 s loxAfr3.scaffold_113 88453 72 - 3408981 ACCTGGCAATGAACTGCATAT------GGTAGATGAGAGGGAAGGAAGAATTAGG-TTCTTGCTTGGATGAA--------ATATTTC i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_3638 26411 71 + 75197 ACAGGGTGATGAACCAGAGAT-------GTAGATGAGAGGGAAGAGAGAACTGTG-TCCTTCCTTGGATGAA--------GTATTAC i proCap1.scaffold_3638 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=304631.000000 s hg19.chrUn_gl000223 28740 198 + 180455 CAGAATTTCCTTCTTTAAAGAC--TCTTATACCACAGCCT-GTC--CACTCTTCCGGTTTCAGCTTC-----CAGTTAGGCTACAGATGACTCACCCAGATCTCATAGCT----ATTTT---GTTTCAC-TGAGATGATG----AACC------------------------------------------------------------CAGGAAA--AGAAACAAGTTCGGAAGAGAAGAAA---ATTAA----TTG-GGGGACATGTAGAG-AATGATGTGTGT-GT---------------------------------------GTTT s rheMac2.chr11 162890 195 - 134511895 GAGAATTTCCTTCTTTAAAGAC----TTACGCCATGGCC--GTC--CACTCTTATGGCTTCAGCTTC-----CAGTTACCCTACAGATGACGCACCCAGATCTCATAGCT----ATTTT---GTTTCAC-TGAGATGATG----AACC------------------------------------------------------------CAGGAAA--AGAAACAAGTTCAGAAGAGAAGAAA---ATTAA----TTT-GGGGACATATAGAG-AATGATGTGTGC-AT---------------------------------------GTTT i rheMac2.chr11 C 0 I 330 s ponAbe2.chr12 187486 194 - 136387465 CAGAATTTCCTTCTTTAAAGAC------ATACCACAGCCT-GTC--CATTCCTATGGTTTCAGCTTC-----CAGTTAGGCTACAGATGACTCACCCAGATCTGATAGCT----ATTTT---GTTTCAC-TGAGATGATG----AACC------------------------------------------------------------CAGGAAA--AGAAACAAGTTCAGAAGAGAAGAAA---ATTAA----TTT-GGGGACATGTTGAG-AATGATGTGTGT-AT---------------------------------------GTTT i ponAbe2.chr12 C 0 I 2 s panTro2.chr12 159121 198 - 135371336 CAGAATTTCCTTCTTTAAAGAC--TTTTATACCACGGCCT-GTC--CACTCTTCCGGTTTCAGCTTC-----CAGTTAGGATACAGATGACTCACCCAGATCTCATAGCT----ATTTT---GTTTCAC-TGAGATGATG----AACC------------------------------------------------------------CAGGAAA--AGAAACAAGTTCGGAAGAGAAGAAA---ATTAA----TTT-GGGGACATGTAGAG-AATGATGTGTGT-GT---------------------------------------GTTT i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_146431 1773 310 + 6863 CAGAAGTGCATTCTTTAAAGCC--TCTTATACCACCGTGTCTTA--CACTCTCATGATTTTACTTTC-----CTCTTATACTACAGATGACTTGCCCAGATATCTTGGCTAATCATTTT---GTTTCAT-TAAGATGAGGGgacaaccccttcgagtcccctcccactgtgggaggttttctgttctccaataaatcctgctTTATAACAGGAAG--ATAAACAAGTTTAGAAGGAAAGAAA---ATGAATTTGTTT-GGAAATATGTTGTG-GGTGATGTGTGT-GTTGTGTGTGTGTAttttttttttttttttttttagttgaagtct i tarSyr1.scaffold_146431 C 0 I 169 s cavPor3.scaffold_248 197495 186 + 667635 TAGAGGTTCATTCTTTAAAGTC--TCTTCCACCACAGTGTCATC--CACTCTCATGACTTCATTTTG-----TACTCA--CCACAGATGCCTTGGCTAGACCTCTTAGGTAATCACTTT---GTTTCAT-TAAATTGAT-----AACA------------------------------------------------------------TAAGAAA--ATGAC------------AGAAAAGT---TTTAT----TTT-GGAAAC---TTGAGCAGTAGTATGTGC-CT---------------------------------------GTTT i cavPor3.scaffold_248 I 126 I 4 s bosTau4.chr17 29925363 195 - 76506943 CAGAAGTTCATTCTTTAAAACC--TCTGCTACCAC--TGTTATC--CATTCTTGTGACTTCAACTTC-----CACTTAT-------ACAACTTGCTCAGGTCTTTTAGTAAATCATTGT---ATTTTAC-AAAGGTGATA----AACA------------------------------------------------------------CATGAAA----AGAAAAATTTAGAAGAGAAGAAATAGGTTTG----TTT-GGGAACATGTTGAG-ATTGACATGTCT-AT---------------------------------------GTTT i bosTau4.chr17 C 0 I 4 s equCab2.chr8 64123082 212 - 94057673 TAGAGGTTCATTCTTTAAAACC--TCTTGGAGCACTGTATTAGC--CACTCTCATGACTTCAACTTC-----CACTTATACCACAGACAACTTGCCCATATCTTTTGGATAATCACTTTAAAAAATCAC-TAAGATGATG----AACA------------------------------------------------------------CAGGGAAACACAAAAAAATTTAGGAGAGAAGAAACGAGTTTA----TTT-TGGGACATGATGAG-ATTGACATGTATCCT---------------------------------------GTTT i equCab2.chr8 C 0 I 4 s felCat3.scaffold_141213 84959 200 - 90490 CGGAAGTTCATTCCTTAAAACC--TCCTCTACCACTATGTTACC--CACTCTCATGATTTCGATGTCAATTTCATTTAT-------ATGACTTACCTAGATCTTTTGGCTAATCATTTT---ATTTCACACAAAATGATG----AAAA------------------------------------------------------------TAGGAAA--AGAAACAAATTTAG-----AAGAAATGGATTTG----CTT-GGGGATACGTTGAG-ATTGACATGTGT-CT---------------------------------------GTTT i felCat3.scaffold_141213 C 0 I 4 s canFam2.chr26 3156923 178 + 42029645 CAGAAGTTCCTTCCTTAAAACC--TCTACTACCAC--GGTTATC--CACTATGGTGATTTCAACATC-----CATTTAT-------ACGACATGCCCAGATCTTTGGGCTACTCATTTT---ATTTCAC-TAAAATGATG--------------------------------------------------------------------------------AACACATTTAGAAGCAAAGAAATGGATGCC----TTTGGGGGATATATAGAG-ACTG---TATG-------------------------------------------GTTT i canFam2.chr26 C 0 I 4 s loxAfr3.scaffold_113 88525 190 - 3408981 CAGAAGTTCATTCTTTAGAGCCTTTTCTATGCTAT------GTCAACACTCTCATGACTTCAACTTC-----CAATTATACTACAGATCACTTACCCACATCTTTTGACTAATCATTTT---GTTACAC-T-------------AACA------------------------------------------------------------CAGAAAA--ATGAC---TTTTAGGAAAAAGTAAATGAATGCA----TTT-TGGGACATGTTTAG-ACCTATATGTGT------------------------------------------GTTT i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_3638 26482 144 + 75197 CCAAAGTTCATTCTTTTAGGCC--TTCTATGCCAT------CTCAACACTCTCATGACATC--------------------------TCATT--------------------TTATTTC---ATTACAA-T-------------AACA------------------------------------------------------------TGGGAAA--ATGGT---ATTTAGGAAAGA--AAAAGGATTTG----TCT-TGGGACATGTTGAG-ACCCA-ATGTAT------------------------------------------GTTT i proCap1.scaffold_3638 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e otoGar1.scaffold_55677.1-5025 3051 0 + 5025 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=18490.000000 s hg19.chrUn_gl000223 28938 21 + 180455 AACTTTATTAAT--------ATTGTCCAA s panTro2.chr12 159319 21 - 135371336 AACTTTATTAAT--------ATTGTCCAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 187682 21 - 136387465 AACTGTATTAAT--------ATTGTCCAA i ponAbe2.chr12 I 2 I 10 s rheMac2.chr11 163415 21 - 134511895 aaCTTTATTAAT--------ATTGTCCAA i rheMac2.chr11 I 330 C 0 s otoGar1.scaffold_7340.1-269436 37213 15 - 269436 ------aCTAAT--------ATTGTCCAA i otoGar1.scaffold_7340.1-269436 I 621 C 0 s calJac1.Contig4202 57107 2 - 216292 ---------------------------AA i calJac1.Contig4202 N 0 C 0 s tarSyr1.scaffold_146431 2252 11 + 6863 ----------at--------gttgctcag i tarSyr1.scaffold_146431 I 169 I 126 s cavPor3.scaffold_248 197685 21 + 667635 AGAACTACTAGT--------CCTGTCCAA i cavPor3.scaffold_248 I 4 C 0 s bosTau4.chr17 29925562 21 - 76506943 TCAACTACCAAT--------CTTGTCCAA i bosTau4.chr17 I 4 C 0 s equCab2.chr8 64123298 21 - 94057673 TTAACTACTAAT--------CTTGTTCAA i equCab2.chr8 I 4 C 0 s felCat3.scaffold_141213 85163 21 - 90490 TCATCTAGTAAT--------CTTGTCCAA i felCat3.scaffold_141213 I 4 C 0 s canFam2.chr26 3157105 21 + 42029645 TCCTGTGTTAAT--------CTCCAACAA i canFam2.chr26 I 4 C 0 s loxAfr3.scaffold_113 88715 26 - 3408981 ---ACTCTTAACTACTAACTTGCGTCTGA i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_3638 26626 18 + 75197 ---GATCGTAAC--------TTCGTCAGA i proCap1.scaffold_3638 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I a score=294440.000000 s hg19.chrUn_gl000223 28959 102 + 180455 ATTAT-C-CTTTCTAACCTGGAATCTTGCCAAAGAtttcacttca----tttcc-ccacatcttttcttcacaccgaagtcagcctgatttttataaag-caattctgct s rheMac2.chr11 163436 106 - 134511895 ATTAT-C-CTTTCTAACCTGGAATCTTGCCGAAGATTTCACttcatccgtttcc-ccatatcttttcttcacaccgaagtcagcctgatttttacaaag-caattctgct i rheMac2.chr11 C 0 C 0 s panTro2.chr12 159340 102 - 135371336 ATTAT-C-CTTTCTAACCTGGAATCTTGCCAAAGAtttcacttca----tttcc-ccacatcttttcttcacaccgaagtcagcctgatttttataaag-caattctgct i panTro2.chr12 C 0 C 0 s calJac1.Contig4202 57109 102 - 216292 ATTAT-C-ATTTCTAACCTGGAATCTTGCCAAAGAtttcacttca----tttcc-ccatatcttttcctcacaccaaagtcagcctgatttttataaag-caattctgct i calJac1.Contig4202 C 0 C 0 s tarSyr1.scaffold_146431 2389 106 + 6863 ATTAT-CATTTTCAAACCTGGAATCTTGCC-ATGATTTCATTGCAAACATTTcc-ccagatcttttcttcacacagaagacagcctactttttataaaa-caactctaat i tarSyr1.scaffold_146431 I 126 C 0 s otoGar1.scaffold_7340.1-269436 37228 105 - 269436 ATTAT-G-ATTTCTAACCTGAGATCTTGCC-ATGACTACACTATGTccatgtcc-ccacatcttttctttacatagaagtcagcctgatttgtataaag-caattccagt i otoGar1.scaffold_7340.1-269436 C 0 C 0 s cavPor3.scaffold_248 197706 101 + 667635 ACTAT-C-ATTTTTGACCTACAGTCTCACT-ATAACTTCACTACATCCATTT-C-CCAAGTCTTTTCTTTACACACAA-TCAGCCTG---TTTATGAAGACAATTCAAAT i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29925583 104 - 76506943 ACTAT-T-ATTTCTCACCCACAACCTTGCT-ATATCTT---CACATCCATTTCCTCCAATTTTTTTCTTCATATAGAAGTCAGCCTGATGTTTATAAAAGCAATTCCAAA i bosTau4.chr17 C 0 I 240 s equCab2.chr8 64123319 107 - 94057673 ACTATTT-TTTTCTCACTTGGAATCTTGCT-ATAACTTCACCACATCCATTTCC-CCAAATCTTTTATTCACACGCAATTCAGCCTGATGTTTATAAAACCACTTACAAA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141213 85184 101 - 90490 ACGAT------TTTCACCTGGAATCCTGct-ctgacttaaccacatccatttct-ccacatctcttcttcacacaaaagttagcctaatatttaaaagg-cagttccaaa i felCat3.scaffold_141213 C 0 C 0 s canFam2.chr26 3157126 92 + 42029645 ACCAT----TATTTCTCACTGAAGCTTGCT-GTGACTTCACTACATCTGCTCTC-CCAAATCGTTTTTTCACACAGAAAGTAGCCCAACGTTTATAAA------------ i canFam2.chr26 C 0 I 222 s loxAfr3.scaffold_113 88741 103 - 3408981 ---at-c-atctctcatcaggaatatcgcc-ataactttatcatacccatttcc-cctaatcttttcttcacacggaagttaacctgatatttaagaaagcaattctgat i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_3638 26644 101 + 75197 ---AT-C-ATCTCTCACCGGGAATCTTACC-GTGAC--GACCATAGCCATTCTC-CTACATCTTTTCTTCACATAGAAGTTAGCCAGATGTTTACGTAAGCACTTGTGAT i proCap1.scaffold_3638 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I a score=360463.000000 s hg19.chrUn_gl000223 29061 164 + 180455 ---catattcttctgcttaacataacttgatgacttttaattgttcttaagtaaaggcaaaagtccttaccatggtcc----ac---tggctgcaggatcttactcccatcttttcaag----cttttcttacatgactttcc---tcctctctaac-tg--c----act----ttgtttcctcaaatgtca s rheMac2.chr11 163542 162 - 134511895 ---catattcttctgcttaacataacttgatga-ttttaattgttcttaagtaaaggcagaagtccttaatgtggtcc----ac---aggctgcaggatcttactcccatcttttcaag----cttttcttac-tgactttcc---tcctctctaac-tg--c----act----TTGTTTCCTCAAATGTCA i rheMac2.chr11 C 0 C 0 s panTro2.chr12 159442 164 - 135371336 ---catattcttctgcttaacataacttgatgacttttaattattcttaagtaaaggcaaaagtccttaccatggtcc----ac---tggctgcaggatcttactcccatcttttcaag----cttttcttacatgactttcc---tcctctctaac-tg--c----act----ttgtttcctcaaatgtca i panTro2.chr12 C 0 C 0 s calJac1.Contig4202 57211 161 - 216292 ---cata---ttctgcttaacataacttgatgacttttagttgttcttaagtaaaggccgaaagtcctaacatggtcc----ac---agactgcatggtcttactcctatcttttcgag----cttttcttatgttactttcc---tcctctctaac-tg--c----act----ttgtttcctcaaatgtca i calJac1.Contig4202 C 0 C 0 s tarSyr1.scaffold_146431 2495 163 + 6863 ---catattcctctgctttacagaatttgatggcttttaatcgctcttaagtaatggcaaaactacttaacatggtcc----ac---agactgcaaact----ctcctatattttcaag----cttttctcacgttactttcc---ttctctatgacatg--c--taacc----ttgtttccccaagtgcca i tarSyr1.scaffold_146431 C 0 C 0 s otoGar1.scaffold_7340.1-269436 37333 164 - 269436 ---catattcctctgctttacatagtttcatggcttttaattgagcttaagtaaaagcacaagtccttaacatagtcc----a-------ctacatattcttacccttgtcttttcaag----cttttcttacatgactttcc---tcctttctGGT-TG--TGCTAATC----CTGTTTCCCCAAATATCA i otoGar1.scaffold_7340.1-269436 C 0 C 0 s cavPor3.scaffold_248 197807 142 + 667635 ---CCTAGTACTCTG----ACATAATTTAAGGGTTGTTACTTGCTCTTAAATCA----AAAATTATTTAAAATGGACCTTTGAA---AAGCTGCATAATCTTACTTTGA--------------CTCTTCT------ATTTTCC---TGCTC--TGCT-TA--A----GCT----TTTTTTCTCCAGATGACA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29925927 165 - 76506943 ---TATATTCCTCTGTTTAATCTAATATGATGGCTTTTGCTTGCTCTAAAG-----ACAATAGTCCTTAGCATAGTCC----CCAGTTGTCTGCATGATCTTACCCCTGTCTTTTCAAGGGAACTTTTCTTAGGCCCCTCCTC---TCT-----GAA-TG--T----GCTAACCTTCTTTCTCTATATGACA i bosTau4.chr17 I 240 C 0 s equCab2.chr8 64123426 150 - 94057673 ---CATATTCCTCTGCTTAACACAATTTGATGGCCTTTGATTGCCCTGAAGTAA-AGGCAAAGTCCTTAACATGGTCC----AC------------GACGCTGCATCTGTCTGTTCAAG-------CTCTTACATTactctcc---tct-----gac-tg--t----gctaacctcctttccccaaaagcca i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141213 85285 157 - 90490 ---catattctccagattaacataatttgatgctttttgattgcgctgaggtaa-agcaaaagtcattaacatggtcc----acaagag--tgcacgatctcacccctgccttttcaag-------ctcttatattactttcc---tcc------tc-tctgt----gca----ttgtttccccaaatgcca i felCat3.scaffold_141213 C 0 C 0 s canFam2.chr26 3157440 128 + 42029645 ----GTATTCCTCAGCTTAATG-ACTTTGATGTCTTTTGGTTACTCTGAAGTAA-AGCAAAAGTCCT-----------------------------GATCTCACGTCTGTATTCTCAAG---------CTTAAATTATTTTCC---ACT------AC-TC--T----GCT----TTGTTTCCCCAAATGCCA i canFam2.chr26 I 222 C 0 s loxAfr3.scaffold_113 88844 169 - 3408981 cgtgtcatttccctgcttcatattatttggtggctgttgaatgctcttagataaaggcaatatttcttaacatactcc----ac--aaggttgcatcatctcacccctacct--tcaaa----tttttcttatattacattccgtctcctgactatg-cG--A----ACC----TTGTTTCCCCAAACGCCA i loxAfr3.scaffold_113 C 0 I 1070 s proCap1.scaffold_3638 26745 167 + 75197 CCTGTCATTTCCCTGCTTCATATTATTTGATGGCTCTTGAATGCTCTTACGTCAAGGAAAAATTTCTTAAGATGCTCC----AC--AAGGTTGTATCATCTCACCCCTATCT--TCAGA----TTTTTCTTACATTACCTACTG--TCCCAACTGTC-CT--A----ACC----CTGTTCCCCTAAATGCCA i proCap1.scaffold_3638 C 0 N 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I a score=66573.000000 s hg19.chrUn_gl000223 29225 37 + 180455 cgtgtctaaggatctttgagcacgttaattccgtctg s rheMac2.chr11 163704 37 - 134511895 TGTGCCTAAGGATCTTTGAGCACGTTAATTCCGTCTG i rheMac2.chr11 C 0 I 2 s panTro2.chr12 159606 37 - 135371336 cgtgcctaaggatctttgagcacgttaattccgtctg i panTro2.chr12 C 0 C 0 s calJac1.Contig4202 57372 36 - 216292 tgtg-ctaaggacctttgagcacattaattctgtcta i calJac1.Contig4202 C 0 C 0 s tarSyr1.scaffold_146431 2658 37 + 6863 catacctcaggacctttgagcatgctaatttgctctt i tarSyr1.scaffold_146431 C 0 C 0 s otoGar1.scaffold_7340.1-269436 37497 35 - 269436 CACATCTGAGGACC--TGAGCATGTGAATTTGTTCTG i otoGar1.scaffold_7340.1-269436 C 0 N 0 s cavPor3.scaffold_248 197949 37 + 667635 TGAACTATAGAAACTTTAACCATGTTAATTTGCCCTT i cavPor3.scaffold_248 C 0 I 9 s bosTau4.chr17 29926092 37 - 76506943 TGCATTGCAGGACCTTTGAGCACGTTAATTTTCTCTA i bosTau4.chr17 C 0 I 4 s equCab2.chr8 64123576 37 - 94057673 cacatctcaggacctttgagcatgttaatttgctcta i equCab2.chr8 C 0 I 2 s felCat3.scaffold_141213 85442 37 - 90490 tgtacctcacaacctttgagcatgttaattccctcca i felCat3.scaffold_141213 C 0 I 2 s canFam2.chr26 3157568 6 + 42029645 TGTATC------------------------------- i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I a score=7041.000000 s hg19.chrUn_gl000223 29262 26 + 180455 aaa-aaaaggtgacta----tcccttcacac s rheMac2.chr11 163743 26 - 134511895 AAA-AAAAGGTGACTA----TCCCTTCACAC i rheMac2.chr11 I 2 C 0 s panTro2.chr12 159643 26 - 135371336 aaa-aaaaggtgacta----tcccttcacac i panTro2.chr12 C 0 C 0 s calJac1.Contig4202 57408 27 - 216292 aaataaaaggtatctg----tcccttcacac i calJac1.Contig4202 C 0 C 0 s tarSyr1.scaffold_146431 2695 11 + 6863 --------------------ccccatcacac i tarSyr1.scaffold_146431 C 0 C 0 s cavPor3.scaffold_248 197995 26 + 667635 AAA-GAAAAAAACCTG----TTTTGCCACAC i cavPor3.scaffold_248 I 9 C 0 s bosTau4.chr17 29926133 18 - 76506943 -----TGAAAAGGTTA----TCCTTTC---- i bosTau4.chr17 I 4 I 860 s equCab2.chr8 64123615 26 - 94057673 -----tgaaaaggctatcggtcccttcacac i equCab2.chr8 I 2 C 0 s felCat3.scaffold_141213 85481 22 - 90490 -----tgaaaAGGCTA----TCTTTTCACAC i felCat3.scaffold_141213 I 2 C 0 s canFam2.chr26 3157574 7 + 42029645 ------------------------TTCACAT i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I a score=64922.000000 s hg19.chrUn_gl000223 29288 29 + 180455 cataacctcattagttcatttc-aggtcat s rheMac2.chr11 163769 29 - 134511895 CATAACCTCATTAGTTCATTTC-AGGTCAT i rheMac2.chr11 C 0 C 0 s panTro2.chr12 159669 29 - 135371336 cataacctcattagttcatttc-aggtcat i panTro2.chr12 C 0 C 0 s calJac1.Contig4202 57435 29 - 216292 tataacttcatgagttcccttc-acgtcat i calJac1.Contig4202 C 0 C 0 s tarSyr1.scaffold_146431 2706 29 + 6863 cataagttcattagtttatttc-aattcat i tarSyr1.scaffold_146431 C 0 C 0 s cavPor3.scaffold_248 198021 29 + 667635 AATAACTTCATTAGTTCATTTT-AACTCGT i cavPor3.scaffold_248 C 0 I 9620 s bosTau4.chr17 29927011 30 - 76506943 cataaGTTAATTGGTACATTTCAAGTTTAT i bosTau4.chr17 I 860 C 0 s equCab2.chr8 64123641 29 - 94057673 cataatttcattcgttcatttg-atttcat i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141213 85503 22 - 90490 CATAACTTTGCTAGTTCATTCC-------- i felCat3.scaffold_141213 C 0 N 0 s canFam2.chr26 3157581 29 + 42029645 CATAACTTCATTAGTTCATTTC-ATCTCAT i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I a score=279162.000000 s hg19.chrUn_gl000223 29317 297 + 180455 cctttagatttcagcccaa------------gcaagtcttgctcaaagaaatgttctttgatcccattataa----tcagtaaggtcccagtgattaca-------------ccctagactt-actctctttagcatttac-ttaatttgcaattatgtttgtaattatgtacttacattcgtgtg-------attattatgttagtgat----tacatcactagactgtaagcac-tatgagtctaga----cacca--------ttttgttcatcactgtacccataatgactactatgc--tacttggt-----------gctcagtgaatatttattgactgaaggaatGACACATATTAT s rheMac2.chr11 163798 296 - 134511895 CCTTTACACTTCAGCCC-A------------GCAAGTCTTGCTTAGAGAAGTGCTCTTTGATCCCATTGTAA----TCAGTAAGGTCCCAATGATTATG-------------CCCTAGACTT-ACTCTCTTTAGCATTTAC-TTAATTTGCAATTATGTTTGTAATTTTGTACTTATGTTCGTGtg-------attattttgttagtgat----tacatcactagactgtaagcac-catgaatctaga----cacca--------ttttgttcatcactgtacccatgatgactactatgc--tacttggt-----------gctcagtgaatatttattgactgaaggaatGATACATATTAT i rheMac2.chr11 C 0 C 0 s panTro2.chr12 159698 297 - 135371336 cctttagatttcagcccaa------------gcaagtcttgctcaaagaaatgttctttgatcccattataa----tcagtaaggtcccagtgattaca-------------ccctagactt-actctctttagcatttac-ttaatttgcaattatgtttgtaattatgtacttacattcatgtg-------attattatgttagtgat----tacatcactagactgtaagcac-tatgagtctaga----cacca--------ttttgttcatcactgtacccataatgactactatgc--tacttggt-----------gctcagtgaatatttattgactgaaggaatGACACATATTAT i panTro2.chr12 C 0 C 0 s calJac1.Contig4202 57464 291 - 216292 cctttacatttcagcccag------------gcaagtcttactcagagaagtgtcctttgattccattgtaa----tcactaaggtcccgatgattaca-------------ccctagactt-actctctttagcatgtac-ttaacttgcaattacatttgtaactatctacttacattcgtgta-------attattttgttagtgat----tacatcactagactgtaagtac-tatgagtctaga----cacca--------ttttgttcatcattgtacccgtaataactacta--------ctggt-----------gatcagtgaacatttattgactgaatgaatAACATgtattat i calJac1.Contig4202 C 0 C 0 s tarSyr1.scaffold_146431 2735 304 + 6863 tcttcttatttcagctcaa------------gtaacttttactcagagaagaattctttgatcccattgtaatctctccataagaccccagtgatttta-------------ttcttgactt-actct-----gcatttat-tttatttgcaattatgtttttaattatatacatagat--gtgtg-------atta---tgttagtaattgtctatatcactggacaataagcacttgtgagtctaga----gactgactgatatttttgttggttgttatacccata---actactatac--tacttgatacag--tgagagctcaatgaatgtttattgaccgaatgTTT------tattat i tarSyr1.scaffold_146431 C 0 C 0 s bosTau4.chr17 29927041 248 - 76506943 GCTTCATATTGCAGCCCAA------------GAAACTCTTCCTCAGAATAGGTTCCTTTG---------------------------------ATTGTAAACTCTTCTTGGATCCTATATGT-ATTCTCTTTAAAATTTACAAAAATTTGCAATTATATTTGTAATT----------ACTTGTGTG-------ATTATTTTGTTAGTAATTATCTTCCTTACTAGACTAGAAGCAC-Tatgag-----------------------------------ttatacccata---actatagcacattgcttggcacagagtgagggctcag---------------tgagtggcaAAAGGATATCAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64123670 322 - 94057673 cctttatatttcatctcag------------acaactcttcctcagagcagtgttcgctgatcccattgtgatctctgagtaaggtccatttgattgtgcactctcactgatttctatacttaactctctctagtgtttac-ataatttgcaattatgtttgtaattatatatgggcatctgtgta-----------ttttgttagtaattgtcaccctcactagactaaaagcac---tgagtccagagactgactg--------ttctgcttgtcattatgccctta---actagcata---tgcttgacacagagcaagggttcaacga--atttattcactgaatgaCCAATGgatagtat i equCab2.chr8 C 0 C 0 s canFam2.chr26 3157610 315 + 42029645 CCTTCATATTTCAACCCAGGAAACTCAGAGAACACTTCTCTCTCTGATCAGTGTTCTCTGACTCTCCTGTGATCTCTGAGTAATGTC------ACTTTGTAAATTCACTGCATTCTGTACTC-ATTCGCTCTAGCATTTGA-CTAAGTTGTAGTTATGTTTATAA------------ATCTGTGTATTGTATTATTTTTTTGTTCATAACTGTCTATCTCATTAGACTA-----------GAGTCTAGA----GActg--------ttttgcttatcattatgcctaga---actaccata---ttgctggcacagaatgagggcccaaata-tatttattaactaaatgaCAAATGGCTGTTAC i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I a score=97659.000000 s hg19.chrUn_gl000223 29614 54 + 180455 CAAATTTTAAC-TTTATCATATTGTAAGGTAAAGTGATATCGTGTTTTAATTTAC s panTro2.chr12 159995 54 - 135371336 CAAATTTTAAC-TTTATCATATTGTAAGGTAAAGTGATATCATGTTTTAATTTAC i panTro2.chr12 C 0 C 0 s rheMac2.chr11 164094 55 - 134511895 CAAATTTTAACTTTTGTCGTATTGTGAGGTAAAGTGATATCGTGTTTTAATTTAC i rheMac2.chr11 C 0 C 0 s papHam1.Contig720037 665 55 + 1143 cAAATTTTAACTTTTATGGTATTGTGAGGTAAAGTGATATCGTGTTTTAATTTAC i papHam1.Contig720037 N 0 C 0 s calJac1.Contig4202 57755 55 - 216292 cgaagtttaacttttgtcatgttgtgaggtaaagtgatatgttgttttaatttac i calJac1.Contig4202 C 0 N 0 s tarSyr1.scaffold_146431 3039 55 + 6863 caaattttaatttttgtcatatggtgaggtaaaatgacactttgccttaatttac i tarSyr1.scaffold_146431 C 0 C 0 s bosTau4.chr17 29927289 49 - 76506943 CAAAACTTAATAC---TCATATGATGAGTTAAAATA---ACTTGTTTTAATTTAC i bosTau4.chr17 C 0 I 2 s equCab2.chr8 64123992 51 - 94057673 caaaatttaatttttgtcatatggtgagttaaaaaa----cttgttttaacttac i equCab2.chr8 C 0 C 0 s canFam2.chr26 3157925 54 + 42029645 CAGATTTTCATTTTTGTCATACAGTGAATTAAATTA-TCTTTTTTTTTAATTTAC i canFam2.chr26 C 0 I 199 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I a score=64469.000000 s hg19.chrUn_gl000223 29668 43 + 180455 TTTTTATGATAATATGAAAC--T--GATCATTGACTAGTGTC----TATCT s panTro2.chr12 160049 43 - 135371336 TTTTTATGATAATATGAAAC--T--GATTATTGACTAGTGTC----TATCT i panTro2.chr12 C 0 C 0 s rheMac2.chr11 164149 43 - 134511895 TTTTTATGATAATATGAAAC--T--GATTATTGACTAGTGTC----TATCT i rheMac2.chr11 C 0 C 0 s papHam1.Contig720037 720 43 + 1143 TTTTTATGATAATATGAAAC--T--GATTATTGACTAGTGTC----TATCT i papHam1.Contig720037 C 0 C 0 s tarSyr1.scaffold_146431 3094 49 + 6863 tttttatgagcataagaaacttt--gtttattgactggtttctatttatct i tarSyr1.scaffold_146431 C 0 C 0 s bosTau4.chr17 29927340 43 - 76506943 TTTTGGTGAGAATAAACAAC--t--gtttattgacaagttct----tattt i bosTau4.chr17 I 2 I 1 s equCab2.chr8 64124043 45 - 94057673 tttgtgtgagaataagtaac--tttgcttattgactagttct----tattt i equCab2.chr8 C 0 C 0 s canFam2.chr26 3158178 41 + 42029645 TTTTTGTGAGAATACGCAAC--T----CTATTGACTAGTTCT----TATTT i canFam2.chr26 I 199 I 8357 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I a score=83766.000000 s hg19.chrUn_gl000223 29711 107 + 180455 ----TC------------TTTCATAGCAAAGGCTATGAAACATTATTTTGCTATGAATcacttttctattaggagtcctatgtttttattattaatttgtagaagctctttgcatagtgggat s panTro2.chr12 160092 119 - 135371336 ----TCTGTGAAATAATGTTTCATAGCCTTTGCTATGAAACAATATTTTGCTATGAATCACTTTTCTATTAGGAGTCCTAAATGGTTATTATTAATTTGTAGAAGCTCTTTGCATAGTGGGAT i panTro2.chr12 C 0 M 2159 s rheMac2.chr11 164192 110 - 134511895 ----TCTGTGAAG---------ATAGCAAAGGCTATGAACCATTATTTTGCTATGAATcacttttctattaggagccctatgtttttataattaatttgtagaagctctttgcatagtgggat i rheMac2.chr11 C 0 C 0 s papHam1.Contig720037 763 110 + 1143 ----TCTGTGAAG---------ATAGCAAAGGCTATGAACCATTATTTTGCTATGAATcacttttctattaggagccctatgtttttataattaatttgtagaagctctttgcatagtgggat i papHam1.Contig720037 C 0 C 0 s tarSyr1.scaffold_146431 3143 90 + 6863 ----tttgtgaaataa--cttaatagc------------------ctttgc------ccatttttctattaggattcctgtggtttt---atttatttgtaggagttctttgtataGTAGGAT i tarSyr1.scaffold_146431 C 0 C 0 s bosTau4.chr17 29927384 81 - 76506943 ----tctttgaaatacccgttcatgta------------------ctttgc------ctatttttccattagtatccctgtatttttattattgatttgcagctgttct-------------- i bosTau4.chr17 I 1 I 369 s equCab2.chr8 64124088 99 - 94057673 atcttctgtgaaatacctgttcatacc------------------ctttgc------tcattttcctattaggatccctgtatctttatgagtgatttgaaggggctctttgtgtgatgggat i equCab2.chr8 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I e canFam2.chr26 3158219 8357 + 42029645 I a score=61965.000000 s hg19.chrUn_gl000223 29818 93 + 180455 tttatgccttt---tgtatatatgttgcaagtacagtatattctcacaAGTCATTACTTA----------TATTTTCCC-TTGTATATAGTGAG--------GCTGTGTGCTATA s rheMac2.chr11 164302 93 - 134511895 tttatgccttt---tgtatatatgttgcaaatatagcatattctcacaagtcgttactta----------tattttccc-tTGTATATAGTAAG--------GTTGTGTGCTATA i rheMac2.chr11 C 0 C 0 s papHam1.Contig720037 873 93 + 1143 tttatgccttt---tgtatatatgttgcaaatatagcatattctcacaagtcgttactta----------tattttccc-tTGTATATAGTAAG--------GTTGTGTGCTATA i papHam1.Contig720037 C 0 C 0 s tarSyr1.scaffold_146431 3233 77 + 6863 TATATGCCTTT---CATACATATGTTGCTGATACAGCATGTTCTTACAAG---TTATTTC----------TATTTTCCC-TTGTATGTATTGGG--------------------- i tarSyr1.scaffold_146431 C 0 N 0 s equCab2.chr8 64124187 115 - 94057673 tttctgtctctataaatataactgttgcagatacagcatattctcacaAGTCATTTTTTCCCTCGGAATGTATTTTCCTTTTGTATGCAGTGCAGTGGTGCAGGTGTGTGCTTTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3166576 86 + 42029645 TTTATGCCTTT---GGTGTATATGTTGCAGATACAGCATATTCTCAAAAGTCATAACTTC----------TGTTTTCTCTTTGTATGGTGT------------GTGTGTGC---- i canFam2.chr26 I 8357 I 4 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29927465 369 - 76506943 I a score=41405.000000 s hg19.chrUn_gl000223 29911 171 + 180455 AGCTTTTTTAAAAAAttttgtttctctagacagagtctcattccatcactcaggctggagtgcagtggtgcgatctcagttcactgcaccttccaccttcctaggtccaagtgatttgcatgcctccgattcccaagtagctgagactaccggcacacgccaccacacctg s rheMac2.chr11 164395 171 - 134511895 AGCtttttttttaaattttatttttctagacagagtctcattccatcactcaggctgcagtacagtggcacgatctcagttcactgcaacctccaccttcctgggttcaagtgagtcgcatgcctcagcctcccaaatagctgagaataccggcacacgccaccacgcctg i rheMac2.chr11 C 0 C 0 s papHam1.Contig720037 966 171 + 1143 AGCttttctttttaattttatttttctagacagagtctcattccatcactcaggctgcagtacagtggcacgatctcagttcactgcaacctccaccttcctgggttcaagtgagtcgcatgcctcagcctcccaaatagctgagactaccggcacacgccaccacgcctg i papHam1.Contig720037 C 0 N 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29927465 369 - 76506943 I e equCab2.chr8 64124302 0 - 94057673 C e canFam2.chr26 3166662 4 + 42029645 I a score=5379.000000 s hg19.chrUn_gl000223 30082 73 + 180455 actaatttttttt-ctttttttaagtggagtttcactcttgttgcccaggctggagtgcaatggtgcgatctca s rheMac2.chr11 164566 74 - 134511895 gctaatttttttttcgttttttagatggagtttcactcttgttgcccaggctggagtgcaatagcacaatctca i rheMac2.chr11 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e ponAbe2.chr12 187703 10 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29927465 369 - 76506943 I e equCab2.chr8 64124302 0 - 94057673 C e canFam2.chr26 3166662 4 + 42029645 I a score=55719.000000 s hg19.chrUn_gl000223 30155 231 + 180455 gctcactgcaacctcctcctcctgggtttcagcgattctcctgcctcagcctcccaagtagctaaaattacaggcacctgccaccaggcccagctaattttttgtatttacagtagagaaggggtttcaccatgttggccaggctggtcttgaactcctgacctaagctgatctgcccaccttgacctcccaatgtgctgggattacaggtgtgagccactgcgcccagcc s rheMac2.chr11 164640 222 - 134511895 gcttactgcaacc-cctcctcctgggtttcagctattttcctgcctcagcctcccaagtagctaagattacaggcacctt--------cccagctaattttttgtatttacagtagagacgggctttcaccatgttggccaggctggtcttgaactcctgacctaagctgatctgccggccttgacctcccaaagtgctgggactacaggtgtgagccactgcgcccaacc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 187713 231 - 136387465 gctcactgcaacctcctcctcctgggtttcagtgaatctcctgcctcagcctcccaagtagctaagattacaggcacctgccaccacacccagctaattttttgcatttacagtagcgaaggggtttcaccatgttggccaggctggtcttgaactcctgacctaagctgatctgcccaccttgacctctcaaagtactgggattacaggtgtgagccaccgtgcccagcc i ponAbe2.chr12 I 10 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29927465 369 - 76506943 I e equCab2.chr8 64124302 0 - 94057673 C e canFam2.chr26 3166662 4 + 42029645 I a score=168025.000000 s hg19.chrUn_gl000223 30386 236 + 180455 ----TGTGC-TATAAGTTTTTACGTAGTCAAATCTAAAAGTCTTTTCCTTTCTGGCTTTTGAATTTCTCTTGTTTAAAAAGGGTATTCA-----------------------TATACCAATTTTTAAAATATTTCCTACACTCTT--------AATTTTCCTTGtatttgggtctctttctggatcttctattttgttacatggatcttgttgcctatttctgtgccaatattatatggtcttaattactgtagctttctggtaaggcacat s ponAbe2.chr12 187944 235 - 136387465 ----TGTGC-TATAAGTTTTTACGTAGTCAAATCTAAAAGTATTTTCCTTTCTGGCTTTTGAATTTCTCTGGTTTAAAAAGGATATTCA-----------------------TATACCAATTTTTTAAATATTTCCTACACTCTT--------AATTTTCTTTAtatttgggtctctttctggatcttctgttttgttacatggatctcattgcctatttctgt-ccaatattatatggtcttaattacggtagctttctggtaagGCACAT i ponAbe2.chr12 C 0 I 1457 s rheMac2.chr11 164862 236 - 134511895 ----TGTGC-TGTAAGTATTTACGTAGTCAAATCTAAAAGTCTTTTCCTTTCTGGCTTTTGAATTTCTCTTGTTTAAAAAGGGTATCCA-----------------------TATACCAATGTTTAAAATATTTCCTACACTCTT--------AATTTTCCTtatatttgggtctctttctgaatcttctattttgttacatggatctcatggcctatttctgtgccaatattatatggtcttaattactgtagctttctggtaaagcacat i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3166666 258 + 42029645 T----GTAC-TTTGAAATTTCGTGCAGTAAAACCTATCTGTCATTTCCCTTTTGGCTTTTGAATTTCCCTTGTATACAGAAGTTATCTACGTATTAAGTTTTTTTTTTTTTTCGTATTAAGTTTTAAAATATATTCTATACTCTCCT-ATGCGAAATTCCCTTATATC----tctgtttcaagatcctttgtttggtcccagtgatctg----tttattcctgtaccagtattatactgttttagttacaatagctttctgatagatcACGT i canFam2.chr26 I 4 I 572 s equCab2.chr8 64124302 233 - 94057673 -------------AAATTTTTATTCAGTCAAATCTATCAGTCTTTTCCCATTTGGCTTTTGAACTTCTCTTGTTTAGAGAGGGTATCCA-----------------------CATACCAAGTTTTAAAATGTATCCTATACTTTTCTAATACTAAATTCCCTTAGATTGgggtctctttcagtgtcctctgttttgtcccactaatctg---atctatccatgtaccagtatcacactgttttaattactatagctttctggtagggcatga i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29927834 240 - 76506943 ATGCTGTACATTGAAATCTTTATACATTCAGATTTATCAGTCTTTTCCCTTTTGAC-TTTGAATTCCTCTCATTTAGAAAGTGTTTCTG-----------------------CACACCAAATTTTAAAATATACCCTACATTCTTCTAATACTaaattcccttatatctatgtctctt------tcctctgttttgtcctactgatctattcgtctattcttatac--atatcgtactgttttaattactatagctttttgggagagcatgt i bosTau4.chr17 I 369 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I a score=23289.000000 s hg19.chrUn_gl000223 30622 91 + 180455 cctctcttactctttcttttctaa--ttttctagactatCTA-TCTTATGTGTTTTCCCCTGTAGATAAAttttattttttattatttattta-----c s rheMac2.chr11 165098 92 - 134511895 cctctcttactctttcttttctca--ttttctaga----cta-tcttatgtgttttaccctgtagataaattttattatttattatttatttatttatt i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29928074 68 - 76506943 cccccttta--ctctctttcctga-tttttctagg----ttagtcttatgagtttgtatctgtggataaacttta------------------------ i bosTau4.chr17 C 0 I 11428 s equCab2.chr8 64124535 70 - 94057673 cccctcttattctttcttctctaa-tttttctagg----ttattcttatgagtttgcctttctagataaatttta------------------------ i equCab2.chr8 C 0 I 292 s canFam2.chr26 3167496 64 + 42029645 CCTGTCTTATTCTTTCTCTTCTAATTTTTTCTAGG----TTATTCTTACAAGTTTGTCTCATAAGATA------------------------------- i canFam2.chr26 I 572 I 4 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e ponAbe2.chr12 188179 1457 - 136387465 I e cavPor3.scaffold_248 198050 9620 + 667635 I a score=96032.000000 s hg19.chrUn_gl000223 30713 386 + 180455 tgagacggagtctcactctgtcaccaggctggagtgcagtggcgcgatcttggctcactgcaatctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaagcgcccaccaccacacccagctaatgtttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaaactcctgaAATttt-atttatttatttatttatttcgagaccaggcctcactccatcacctaggctggagtacagtggtgcaatcatggctcactgcaaactctacctcctgggctcaagcaatcctccagcctcggcttcccaacgtgctgggattactggcatgagctatcacacctggct s rheMac2.chr11 165190 380 - 134511895 tgagatagagtctcattctgttgccaggctggagtgcagtgccgcgatcttggctcactgcaatctctgcctcctggattcaagcgattctcttgcctcagcctcctgagtagctgggagtacaagcgcccaccaccacacccagctaatgtttgtatttttattagagacagggtttcaccatgttggccagcatggtctcgatctcctgaAAAttt----tatttatttatttattttaagaccgg---tcacaccatcacctaggctggagtgcagtggtgcaataatggttcactgtaacctcaacctcctgggctcaagtgatcctccagcctcagcctcccaaagtgctggaattactggcgtgagctatcacacctggct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 189636 387 - 136387465 tgagacagagtctcactctgtcgccaggctggagtgcagtggcacgatcttggctcactgcaatctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagcagctggaactacaagcgcccaccaccacacccagctaatgtttgtattttcagtagagacagggtttcaccatgttggccaggatggtctcaatctcctgaAATTtttatttatttatttatttattttgagaccaggcctcactccatcacctaggctggagtatagtggtgcaatcatggctcactgcaacctctacctcctgggctcaagcaatcctccagcctcggcttcccaaagtgctgggattactggcatgagctatcacacctggct i ponAbe2.chr12 I 1457 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29928142 11428 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3167560 4 + 42029645 I a score=28649.000000 s hg19.chrUn_gl000223 31099 77 + 180455 GTAGATAAATTTTAAAATAATCTTGCCAAACTCCTTTAGCAAAATTTATTTGAAATTCCATTGTGATTATATTCAGT s ponAbe2.chr12 190023 77 - 136387465 GTAGATAAATTTTTAAATAATCTTGCCAAACTCGTTTTGCAAAATTTATTAGAAATTCCATTGTGATTATACTCAGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 165570 77 - 134511895 GCAGATAAATTTTAAAATAATCTTGCCAAACTCCTTTTGCAAAATTTATTAGAAATTCCATTGTGATTATATTCAGT i rheMac2.chr11 C 0 I 1568 s canFam2.chr26 3167564 74 + 42029645 TTAGATATTTTTTAGAATATTCTTGCCAAATTCTCTTAACAGAATTCATTAG-AATTCAATCATGACTAT--TCAGG i canFam2.chr26 I 4 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29928142 11428 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I a score=38467.000000 s hg19.chrUn_gl000223 31176 295 + 180455 GTTAagagagaaacaatatattccctatgtggtaacaacaatttgaatgacggtagctttgtcatctgaaaccacggaggccagagggaggtggc---acattttccaagtgcttg--aaagatttgtcaacctctaattctatatctacc--aaaaatacctttcaggaattaagaagaaataaaagcatttcagatgaagcaaaataataattggttgactgcccttcaagactgactcacagagcatctctgactgaaaaggtaataggctggaacttcgaaaagacagaaaaaactgt s ponAbe2.chr12 190100 295 - 136387465 GTTAagagaaaaacaatacattccctatggggtaacaacaatttgaatgacagtagctttgtcatccgaaaccatggaggccagagggaggtggc---acattttccaagtgcttg--aaagatttgtcaacctctaattctatatctacc--aaaaatacctttcaggaattaagaagaaataaaagcatttcagatgaaggaaaataataattggttgactgcccttcaagactgactcacagagcatctctgactggaaaggtaacaggctggaacttcgaaaagacagaaaaaactgt i ponAbe2.chr12 C 0 C 0 s canFam2.chr26 3167638 225 + 42029645 TTAAagagaaaaaccatgcactatctatagaggaa----aagttaagtgacagtggattttttatctgaatccatggaagccag-gggaggtggtacaacatttttcacatgctggaaaaaaaattgttaatccttaattctatatctaccaaaaaaatattcttcagaaaccaaggggaaataaagac-cttcagatgatgaagatgaa------------------------------------------------ggaaaactaagaatttggcac----------------------- i canFam2.chr26 C 0 I 269 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 165647 1568 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29928142 11428 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I a score=33274.000000 s hg19.chrUn_gl000223 31471 289 + 180455 ggagtgggttaaaattggggtaaatgtaacagactacctttctcgtgagtttttaaaatcatgctcaatggttgaagcaaaaattttaacatc----atctgatgtgagacttaaatgtatatagaggaaagacttaagacaattatagtaaagagtgaaagggccaggtgcagtggctcacacctgcaatcccagcactttgggaggctgaggtggg-aggcttgcttggggccaggagtttgagaccagcctgggcaacatagtgagaccctgtctctaacagcaagaagaa s ponAbe2.chr12 190395 290 - 136387465 gcagtgggttaaaattggggtaaatgtaacagactacctttctcgtgagtttttaaaatcatgctcaatggttgaagcaaaaattttaacatc----atctgatgtgagacttcaatgtatatagaggaaagacttaagacaattatagtagagagtgaaagggccaggtgcagtggctcacacctgcaatcccagcactttgggaggctgaggtggggaggattgcttggggccaggagtttgagaccagcctgggcaatatagtgagaccctgtctctaacagcaagaagaa i ponAbe2.chr12 C 0 C 0 s bosTau4.chr17 29939570 209 - 76506943 GAAATGGgtagaagtaagggtaaatataatggacta---ttctcatgagttttaaaaatcacatttgatggttgaaacaaaaagtt--acaccaccaatctgatatggaaatccaatgtatgc---------acttcactcaa--atgggaaaatgtcaaaa--------------------accagtag-------actatgttaagttagggtgtg------------------------taatatc-------------taatgaaacca-----ctaacaaaaaaaaaaa i bosTau4.chr17 I 11428 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 165647 1568 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3167863 269 + 42029645 I a score=36353.000000 s hg19.chrUn_gl000223 31760 213 + 180455 gagtaaagggacctaaatggaagagaggtttttacactttagtcaaagttgtaacatatcaatacctgtagattgtgac--attaggcatatatatcatactacctattgaaaccacaaagctatattcaaaaatactttcaatagctaaaaactggaattct-aaaataagttcaagtagcccacaggaaagcaagaaaatggaaaaacagtaat--- s ponAbe2.chr12 190685 208 - 136387465 gagtaaagggacctaaatggaagagaggtttttacactttagtcaaagtagtaacatatcaatacctgtagattgtga-------ggcatatatgtcatactacctattgaaaccacaaagctatattcaaaaatactttcaatagctaaaaactgaaattct-aaaataagttcaagtagcccacaggaaagcaagaaaatggaaaaagagtaat--- i ponAbe2.chr12 C 0 I 3 s bosTau4.chr17 29939779 116 - 76506943 ------------------------------------------------------------aaaaaaagaaagctgt---------------------------------------aaagag--acactcaaaaatactttcaataattaacaatagg-attct-aaaaaatattcaagtaacccacagaaaagcatgaaaattggaaaagaggtatgat i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3168132 210 + 42029645 ggttaaatgaacgtagatggaagtaaggtttctgcacttcagtcaaagtggtaaaatgtcaatatgagcatgctgtgttaaattaggtatttatattgtaatactaagtgaaaccacaaag--atacctcaaaatattttcaataaggaaaaata---attctaaaaaaatgttcaagtaacccacataaaagcaagaaaacataaaaag----atgag i canFam2.chr26 I 269 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 165647 1568 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I a score=71852.000000 s hg19.chrUn_gl000223 31973 291 + 180455 aagcagaaggaagaaacagaaaataaaaaatag---------------------------------aaGTCCCACATAATGCTTATGTATAAAAAATAAAAGTCCCACATAACGCTTATGTATAAAAAATAAAAGTCCCACATAATGCTTATGTATAAAAATAGG--AAACACACAGACACACAAGTATATATCACTGTGAGTATACTGTAAATTCTTGTTTTTTCTTCTTTCTGTTTCTTAAATATACTAAGATAATTCTCACGAGTTACTCCTCTCTG---CTAGAACAC----TAGTATTTCCACTCAAATTCACCTTCTTAAAAAGACC s ponAbe2.chr12 190896 260 - 136387465 aagcagaaggaagaaacagaaaataaaaaatag---------------------------------aaGTCCCACATAATGC---------------------------------TTATGTATAAAAAATAAAAGTTCCACATAATGCTTATGTATAAAAATAGG--AAACACACAGACACACAAGTGTATATCACTGTGAGTATACTGTAAATTCTTGTTTTTTCTTCTTTCTGTTTCTTAAATATACTAAGATAATTCTCACAAGTTACTCCTCTCTG---CTAGAACACC--GTAGGATTTCCACTCAAATTCACCTTCTCAAAAAGGCC i ponAbe2.chr12 I 3 C 0 s gorGor1.Supercontig_0068724 20 324 + 1145 AAGCAGAAGGAAGAAACAGAAAATAAAAAATAGAAGTCCCACATAATGCTTATGTATAAAAAATAAAAGTCCCACATAATGCTTATGTATAAAAAATAAAAGTCCCACATAATGCTTATGTATAAAAAATAAAAGTCCCACATAATGCTTATGTATAAAAATAGG--AAACACACAGACACACAAGTATATATCACTNNNNNNNNNNTGTAAATTCTTGTTTTTTCTTCTTTCTGCTTCTTAAATATACTAAGATAATTCTCATGAGTTACTCCTCTCTG---CTAGAACAC----TAGTATTTCCACTCAAATTCACCTTCTCAAAAAGGCC i gorGor1.Supercontig_0068724 N 0 C 0 s bosTau4.chr17 29939895 199 - 76506943 aaac--aaggagcaaa--------------------------------------------------AAATT----------------------------------------------------------TTAAAGTCCCAACTCATGTTTATGTACAAAACCAGT--------------ACACACTCATATTTAGCTATGATTATACTGTATTTTTGTTGCTATTTTTC-TTCTGTTTCTCAAACATACTAAGATAATTCTTACCGATTTCTCTTTCTTCTGCCTACGACATTCTGTg--gtctccactcaaatttgtcttctcaa------- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3168342 176 + 42029645 aaacagaaggaac-----------------------------------------------------------------------------------------------------------------------aAGTCCCATCTAAATATTAGGTGTATAAATAGTATacacacacacacacacacacacacTTAACTGTGACTCTACTGTA--------------------------------------TAAAATAACTGTCACCAATGACTCTCCTTTTTCCATAGcacttcctgtagtgtctctaatcaaatgtatcttctcaaaaggtcc i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 165647 1568 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I a score=118022.000000 s hg19.chrUn_gl000223 32264 435 + 180455 TATTaaactaccaattatatgttcaccatttcggtaatggctatgctagaagcccaatctccaccagaatgcaatatacccaggtaacaaacatgcaccaagtactccctgaatctaaaataaaattaaatttaaaatttaaaaaTTAAggccgggcatggtggctcacgcctgtaatcctggcactttgggaggctgagatgggtggatcacttgaactcaggagttgtagagcagtctggccaatgtgatgaaaccccgtctctactaaaaatacaaaaattagccgggtgtggtggtgcacacctgtagtcccagctactcgggaggccgaggtgggagaactgcttgaacct-gggaggcggaggttgctgtgagctaagatcgtgccattgcactccagcctgggtgacagagcaagactccgtctcaaaa s ponAbe2.chr12 191156 436 - 136387465 TATTaaactaccaattatatgttcactatttcggtaatggctatgctagaagcccaatctccaccagaatgcaatatacccaggtaacaaacatgcaccaagtactccctgaatctaaaataaaattaaatttaaaatttaaaaaTTAAggccgggcacggtggctcacgcctgtaatcccagcactttgggaggctgagacgggtggatcacttgaactcaggagttggagagcagtctggccaatgtgatgaaaccccgtctctactaaaaatacaaaaattagccgggtgtggtggtgcacacatgtagtcccagctactcgggaggctgaggtgggagaactgcttgaacctcgggaggcggagattgctgtgagctaagatcatgccattgcactccagcctgggtgacagagcaagactttgtctcaaaa i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0068724 344 435 + 1145 TATTaaactaccaattatatgttcactatttcggtaatggctacgctagaagcccaatctccaccagaatgcaatatacccaggtagcaaacatgcaccaagtactccctgaatctaaaataaaattaaatttaaaatttaaaaaTTAAggccgggcacggtggctcacgcctgtaatcctggcactttgggaggctgagatgggtggatcacttgaacccaggagttgtagagcagtctggccaatgtgatgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggtgcacacctgtagtcccagctactcaggaggctgaggtgggagaactccttgaacct-gggaggcggaggttgctgtgagctaagatcgtgccattgcactccagcctggatgacagagcaagactccgtctcaaaa i gorGor1.Supercontig_0068724 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 165647 1568 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29940094 0 - 76506943 C e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168518 0 + 42029645 C a score=89828.000000 s hg19.chrUn_gl000223 32699 122 + 180455 aaaaaattaaaaaTTAAATAAGCTTGAATAAGATTTTTAAAAAACTAC------CAGTTGCAGTTTTCCTCACATTTAAATCAATCTGTATCATATTACCCTGTTTTG-TTTTATCATAGCATTTATTC s rheMac2.chr11 167215 122 - 134511895 aaaaaattaaaaattaaataaGCTTGAATAAGATTTTT-AAAAACTAC------CAATTGCAGTTTTCCTCACATTTTAATCAATCTGTATCATATTACCCTGTTTTGTTTTTATCATAACatttattc i rheMac2.chr11 I 1568 C 0 s ponAbe2.chr12 191592 121 - 136387465 aaaaaaataaaaaTTAAATAAGCTGGAATAAGATTTTTAAAAAACTAC------CAATTGCAGTTTTCCTCACATTT-AATCAATCTGTATCATATTACCCTGTTTTG-TTTTATCATAGCATTTAATC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0068724 779 123 + 1145 aaaaaattaaaaaTTAAATAAGCTTGAATACGATTTTTAAAAAACTAC------CAATTGCAGTTTTCCTCACATTTAAATCAATCTGTATCATATTACCCTGTTTTGTTTTTATCATAGCATTTATTC i gorGor1.Supercontig_0068724 C 0 C 0 s canFam2.chr26 3168518 93 + 42029645 -----------------------------------ttt-taaaacgactccatccaattgtagcttctttcacatccacattaatcttggtcatattgccctgcattgtttttgtcatagtatttattc i canFam2.chr26 C 0 I 45 s bosTau4.chr17 29940094 99 - 76506943 -----------------------------aaggttctt-taaaactactccaatcaagagcagcttctctcatactcaaattattctgtatcatattgacctgttttgtttttatcacagcatttattt i bosTau4.chr17 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I a score=18862.000000 s hg19.chrUn_gl000223 32821 100 + 180455 AAATATTTAAAA--GTATGTATATATAATTAAAAAGTGTATGTATATATACATACAC-ttttatatacatatatgtacatatttacatatatatatatatgtc s gorGor1.Supercontig_0068724 902 102 + 1145 AAATATTAAAAAGTGTATGTATATATAATTAGAAAGTGtatgtatatacaaatacac-ttttatatacatatatgtacatagatacatatatatatatGTCTC i gorGor1.Supercontig_0068724 C 0 I 1 s ponAbe2.chr12 191713 69 - 136387465 AAATATTAAAATGTGTATGTGTATATA--TTAAAAGTG-atgtatgtatatacatac-ttttatatacatata------------------------------ i ponAbe2.chr12 C 0 I 395 s rheMac2.chr11 167337 103 - 134511895 aaatattaaaaagtatatgtatatataattaaaaaGTGTATTTATATGTACCTACACTTTTtatatacatgtatgtacatatatacatatatatatatatTTG i rheMac2.chr11 C 0 I 5 s bosTau4.chr17 29940193 52 - 76506943 --atactagataacttct---tctgtttttaaaaatttaatgattat--------------------------------------------tgtctatgtt-- i bosTau4.chr17 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168611 45 + 42029645 I a score=78844.000000 s hg19.chrUn_gl000223 32921 119 + 180455 -tcttgttaaaatataaactctgtgacagaagaaatcttttct----tact--gactttcaccctattgcgtg--------------gaa-ca--------ttataggtagtacatggtaggtaaaggttcataaaatatgttttgaat s gorGor1.Supercontig_0068724 1005 122 + 1145 -TCTTGTTAAAATATAAACTCTGTAACAGAAGAAATCTTTTCT----TACTCAGACTTTCACCCTATTGCCTA--------------GAACCA--------TTATAGGTAGTACATGGTAGGTAAAGGTTCATAAAATATGTTTTGAAT i gorGor1.Supercontig_0068724 I 1 N 0 s ponAbe2.chr12 192177 121 - 136387465 -tcttgttaaaatataaactctgtgagagaagaaatcttttct----tactcaaacttttaccctattgccta--------------gaa-ca--------ttataggtagtacctggtaggtaaaggttcataaaatatgttttgaat i ponAbe2.chr12 I 395 C 0 s rheMac2.chr11 167445 128 - 134511895 -TCTGGTTAAAATATAAACTCTGGGAGAGAAGAAATCTGGTCT----CACTCAGACTTCTACGCT-TTGCCTA--------------GAA-CAGTGGTATGTTATAGGTAGTACATGGTAGGTAAAGGTTCATAAAATATGTTTTGAAT i rheMac2.chr11 I 5 C 0 s bosTau4.chr17 29940245 117 - 76506943 ccttcattagaatatcagatt-ctgagaagagaaaccttttctgtcttatttggacctttacctcattgccta--------------gaa-ct--------------gtggtaaatggtatgtataggctcataaatt-t-ttttgcat i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3168656 123 + 42029645 ---------gaatataaactc-gtgagagcagaaggcttttctgtcctgttcagaccttgaccccatcacctaaaagagcagtacgggag-aa--------------gtagtacatggtgtatagaggcttataaagtat-ttttgaat i canFam2.chr26 I 45 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I a score=44908.000000 s hg19.chrUn_gl000223 33040 127 + 180455 --------TAGTATATTCAAT-----TTTTTTTGTAAACGTCTGTGCACAGTTTCATTGTATACATTTTTCATAAATTAGCCAA-------TAAAGACTT------------------------------ACAGGAGACAGTTTTACTTTCTATAACCTTAAGTTTTATGCAAGTGA s ponAbe2.chr12 192298 127 - 136387465 --------TAGTATATTCAAT-----TTTTTTTGTAAATGTCTGTGCACAGTTTCATTGTATACATTTTTCATAAAGTAGCCAA-------TAAAGACTT------------------------------ACAGGAGACAGTTTTACTTTCTATAACCTTAAGTTTTATGCAAGTGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 167573 127 - 134511895 --------TAGTATATTCAAT-----TTTTTTTGTAAAGGTCTGTGCACAGTCTCATTGTATACATTTTTCATAAATTAGCCAA-------TAAAGACTT------------------------------ATAGGAGACAGTTTTACTTTCTATAACCTTACGTTTTATGTGGGTGA i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29940362 166 - 76506943 aat----tgaatATATTCAATAAGTATATTTTTGTAAA----TGTGCATTCCTTCAATGTATCAATTTACTGTAAATTAGTCAAATAGA-TAAAAGATTTAAATGTTAAAAATAAAACCATAGTCAAGTAATAGAAGACAATTTTATAGCCTATGACATTGAATT-TGTGA-GGTGA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3168779 158 + 42029645 aagtgaatGAATAGATCCAAGTAGTAGCATTTTGT-AA----TGTGCATG-TTTCATTGTACTGATTTATCATAAGTTAGTCAAATAGAGTCAAAGACTCTAATGTTTAAACTAGA------------CAACAGGATATAATTTTTTATCCATTAACATTAAATTCTATAC-AGTGG i canFam2.chr26 C 0 I 767 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I a score=63089.000000 s hg19.chrUn_gl000223 33167 198 + 180455 AATCTATGTTTTATAGTTATTCTCCTTAGTGTATGTTTTAACATTTTTTTCACCC---ACATTATAGATATTAATATAACTATATATAATGtttttactttttttgagacagggtct--------cactctgtcacctaggt---------tggagtgcagtggtgcaatcatggctaactgctgcctcaacctcccagactcaagtgatcctcctac s ponAbe2.chr12 192425 198 - 136387465 AATCTATGTTTTATAGTTATTCTCTTTAGTGTATGTTTTAACATTTTTTTCACCC---ACATTATAGatattaatataattatatataatGTTTCTACtttttttgagacagggtct--------cactctgtcacctaggt---------tggagtgcagtggtgcaatcatggctagctgctgcctcaacctcccagactcaagtaatcctcctac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 167700 196 - 134511895 AATCTATGTTTTATAGTTGTTCTCCTTAGTGCATGTTTTAACATTTTTT--ATCC---ACATTATAGatattaatataattatatataatGtttttactttttttgagacagggtct--------cactctgtcacccaggt---------tggagtgcagtggtgcagtcatggctgactgctgcctcaacctcccagactcaagggatcctcctac i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29940528 209 - 76506943 AATCTATGCTTTTTAATTGATCTCCTTAATATGC-TTTAAAAATCTTTTTCATCCATAATATTATAAGTATCCATATGATTGTATATGATGCTTTTGTTGTTTCTTATATTGCAACTACAAATTACACCTTTTGGAATTGGTGTTTTTTAGTGTAACGTAGGGGTGCAATGgggcttcccaggtggctcaat--------ggtaaagaatcctcttgc i bosTau4.chr17 C 0 I 175 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=60488.000000 s hg19.chrUn_gl000223 33365 239 + 180455 ctcagcctcccaagtagctggaactacaggcctatgccaccttgcccagctaatttttattttttgtagggacagggtctccctatgttgcccaggctgatatcaattcctgggctcaagcaatcctcccaccttggcctcctaaagtgctgggactacaggtgtgagctactgTACTGTTTCTTATGTGCCAATTGTAGAATTATCCTTTCTGGCATTTGTCTTTTTTAGTGTGATAT s rheMac2.chr11 167896 239 - 134511895 ctcggcctcccaagtagctgggactacaggcctctaccaccttgcccagctaatttttattttttgtaaagacagggtctccctatgttgcccaggctgatatcaactcctgggctcaagcaatcctcccaccttggcctcctaaagtgctgggactacagctgtgagctactgTACTGTTTCTTACATGCCAATTGTAGAATTCTCCTTTCTGGCATTTATCTTTTTGAGTGTGATGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 192623 238 - 136387465 ctcagcctcccaagtagctgggactacaggcctatgccaccttgcccagctaatttttattttttgtagggacagggactccctatgttgcccaggctgctatcagttcctgggctcaagcaatcctcccaccttagcctcctcaagtgctgggact-caggtgtgagccactgtgcTGTTTCTTATGTGCCAATTGTAGAATTATCCTTTCTGGCATTTGTCTTTTTTAGTGTGATAC i ponAbe2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29940737 175 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=31441.000000 s hg19.chrUn_gl000223 33604 75 + 180455 AGGGATGCAACATTATTATTTTG-TACAAACTGCTTGGTTGTAGGTCCAAACAACATGTATTGGATAAAACGTGCT s ponAbe2.chr12 192861 75 - 136387465 AGGGATGCAACATTATTATTTTG-TACAAACTGCTTGATTGTAGGTCCAAACAACATGTATTGGATAAAACATGCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 168135 76 - 134511895 AGGGATACAACATTATTATTCTGTTACAAACTGCTTGGCTGTAGGTCCAAACAACATGTATTGGATAAAACATGCT i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29940912 75 - 76506943 AGGAATGCAATGCTGTTATTTTG-TCCAAAATGTTTGGCTGAAGGTCCCAACAACATATATTTAACGAAACATCCT i bosTau4.chr17 I 175 I 181 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=66848.000000 s hg19.chrUn_gl000223 33679 255 + 180455 TTGAgctggacatagtggctcattcctgtaatcccagcagtttgagaggccaaggcaggagaatcacttgaggccaggagttcaagaccaacctgggcaacatagcgagatccccatctctacaaaaaa------taattagccagacatggtagtgtgcatctgtagttctaactacttgggaggctgagccagcaggatcacttcaacacaggagttgaaggctgcagtgagctatgatcgtaccactgcattctagcc s ponAbe2.chr12 192936 255 - 136387465 TTGggctggacatagtggctcattcctgtaatcccagcagtttgagaggccaaggcaggagaatcacttgaggccaggagttcaagaccaacctgggcaacatagtgagatccccatctctacaaaaaa------taattagccagacatggtagtgtgcacctgtagttctaactacttgggaggctgagccagcaggatcacttcaacacaggcgttgaaggctgcagtgagctatgatcgtgccactgcattccagcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 168211 261 - 134511895 TTGggctggacatagtggctcattcctgtaatcccagcagtttgagaggccaaagcaggagaatcacttgaggtcaggagttcaagaccaacctgggcaacacagcgagatcccaatgtctacaagaaataaagttaattagccagacacagtagtgtgcacctgtagttctaaccacttgggaggctgagccagtaggatcacttcaacacaggagttcaaggctgcagtgagctatgatcgtaccactgcattctagcc i rheMac2.chr11 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29940987 181 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=24678.000000 s hg19.chrUn_gl000223 33934 46 + 180455 tgggtgacagagtgagaccctatctcTAATAATTAAATTggctggg s gorGor1.Supercontig_0574391 0 46 - 827 TGGGTGACAGAGTGAGACCCTATCTCTAATAATTAAATTggctggg i gorGor1.Supercontig_0574391 N 0 C 0 s ponAbe2.chr12 193191 46 - 136387465 tgggtgacagagtgagaccctatctcTAATAATTAAATTggctggg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 168472 46 - 134511895 tgggtgacggagtaagatcctatctcTAATAATTAAATTGGCCGGG i rheMac2.chr11 C 0 I 3850 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29940987 181 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=123855.000000 s hg19.chrUn_gl000223 33980 474 + 180455 tgcggtggctcacgcctgtaatcccagcactttgggaggttgaggcgggcggatcaccagaggttgggagtttgagaccagcctggctaacatgaagaaaccctgtctctactaaaaatacaaaattagccgggcatggtagtgcatgcctgtactcccagctactcaggaggctgaggcaggagaatcacttgaaaccaggaggcggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacaagagcgaaactccatgccccccccaaaaaaaTTAAATTAAACTGAATTTTAAAATCAAATTGTTTTCAGTAGCCTAGAGAACACATAGAGGATGCTTCTCTTCAATAGGGCTCTGCCACATGAAGTCATCTCTGGATGTATTTTTAAGAATAAGGatatatatatatgatctctctatattatatatataagatctgtatatagagagatatagata s gorGor1.Supercontig_0574391 46 463 - 827 tgcggtggctaacgcctgtaatcccagcactttgggaggtcgaggtgggcggatcaccagaggttgggagtttgagaccagcctggctaacatgaagaaaccctgtctctactaaaaatacaaaattagctgggcatggtagtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaaccaggaggcggaggttgtggtgagccgagatcgtgccattgcactccagcctgggcgacaagagcgaaactccatgcccccc--aaaaaaaTTAAATTAAACTAAATTTTAAAATCAAATTGTTTTCAGTAGCCTAGAGAACACATAGAGGATGCTTCTCTTCAATAGGGCTCTGCCACATGAAGTCATCTCTGGATGTATTTTTAAGAATAAGGatatatatatatgatctctctatat------tataagatctgtatatagagagat---gata i gorGor1.Supercontig_0574391 C 0 C 0 s ponAbe2.chr12 193237 473 - 136387465 tgcggtggctcacgcctgtaatcccagcactttgggagttc-aggtgggcggatcaccagaggttgggagtttgagaccagcctggctaacatgaagaaaccctgtctctactaaaaatacaaaattagccggacgtggtagtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaaccaggaggtggaggttgtggtgagccgagatcgtgccactgcactccagtctgggcgacaaaagtgaaactccatgccccccccaaaaaaaTTAAATTAAACTAAATTTTAAAATCAAATTGTTTTCAGTAGCCTAGAGAACACATACAGGATGCTTCTCTTCAATAGGGCTCTGCCACATGAAGTCATCTCTGGATGTATTTTTAAGAATAAGGatatatatatatgatctctctatattatatatataagatctgtatatagagagatatagata i ponAbe2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 168518 3850 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29940987 181 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=37241.000000 s hg19.chrUn_gl000223 34454 109 + 180455 taagaataag------------------------------------tatatatatat-CCCCCTCAAGGTT---CTTTTAATGACTCATTTTCTCCTTTTCTCTGATCCTCAGTTTATAGCTTCAGCAGCAGAGATCAGAAG---AGATCAG s ponAbe2.chr12 193710 145 - 136387465 taagaataagtatatatatatatatatatatatatatatatatatatatatatatat-CCCCCTCAGGTTT---CTTTTAATGACTCATTTTTTCCTTTTCTCTGATCCTCAGTTTATAGCTTCAGCAGCAGAGATCAGAAG---AGATCAG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0574391 509 111 - 827 taagaataag----------------------------------tatatatatatat-CCCCCTCAAGGTT---CTTTTAATGACTCATTTTTTCCTTTTCTCTGATCCTCAGTTTATAGCTTCAGCAGCAGAGATCAGAAG---AGTTCAG i gorGor1.Supercontig_0574391 C 0 C 0 s bosTau4.chr17 29941168 113 - 76506943 TAAGAATAAT----------------------------------AATGTATAGGTACACCCCCTCAGGTTTCTCCTTTTATTGAC----TTTTTCTTATTCTTTGACCTTCAGATCATAGTTTCAGCAACAGAGACCAGAAGCAAAGACAA- i bosTau4.chr17 I 181 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 168518 3850 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=133350.000000 s hg19.chrUn_gl000223 34563 206 + 180455 CCTAAACATTTCTTAAAATGAtattgtgaacactagtgtataagtctttggagacacatgttttcattttccttggtaa-atacagaagagtagaattgctgaatcatatggccagcatatatttaactttt-aagaaactgccaaactgttttccaaagtg-ttt---ttttttttttaattcccactagcaacgtctgagagttctggtt s papHam1.Contig550112 210 202 - 1823 CCTAAACATTTCTTAAAATGAtattgtgcacgctagtgtataagtgtttggggaca----ttttcattttccttggtaa-atgcagaagagtagaattgctgaatgatatggccagcatatattcaactttt-aagaaactgtcaaactgttttccaaagtg-gtt---ttatttttttaattcccactagcaacgtctgagagttctggtt i papHam1.Contig550112 N 0 C 0 s ponAbe2.chr12 193855 206 - 136387465 CCTAAACATTTCTTAAAATGAtattgtgaacactagtgtataagtctttggagacatatgttttcattttccttggtaa-atacagaacagtaggattgctgaatcatatggccagcatatatttaactttt-aagaaactgccaaactgttttccaaagtg-gtt---ttatttttttaattcccactagcaacatctgagagttctggtt i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0574391 620 207 - 827 CNNNAACATTTCTTAAAATGAtattgtgaacactagtgtataagtctttggagacacatgttttcattttccttggtaa-atacagaagagtagaattgctgaatcatatggccagcatatatttaactttt-aagaaactgccaaactgttttccaaagtgtttt---ttttttttttaattcccactagcaacgtctgagacttctggtt i gorGor1.Supercontig_0574391 C 0 N 0 s bosTau4.chr17 29941281 206 - 76506943 ATCAAACCTTCATTAAACTGATCTTATGAGCA-GGgtatacaagcttttatggata----ttttcatttcccttggccatatagctaaaaggagaattgctgaatcctgtggtcagttcatgttaatcttttgaagaaactgccaaactgttttccacagtg-gttgcatgttgttttatatccccaccagcagtgtatgagggttttgctt i bosTau4.chr17 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 168518 3850 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=173350.000000 s hg19.chrUn_gl000223 34769 478 + 180455 cctccacattattgccagcacttggtattggcagtgttttgtttagccattatgatgggtgtaatgtggtatctcagctttattcttcatagccgaaaatctgaaacaacccaaatgtccaccaacaggtgcacagacagacaactgggtatattcatacaaaggaataatcagcaataaaaagaaacaaaccgctgatgcccacacaacacgcacaaatcccaaaaacaccagagtggaagtaaccacacaaaaacaaatactttttgcataatttccatttatataaaattatagaaaagataaaaataatctatagtattagaagggagattggtggttacctggggtcagtgatgggagtgagatttgaccgggaagagaaacaagggaatattttggagtaaaggaaatgttctacatcttgacaggagctgtggttgcacagccaaagacatttttcaaagctcatagaact s ponAbe2.chr12 194061 478 - 136387465 cctccacattattgccagcacttcgtattggcagtgttttgtttagccattatgatgggtgtaatgtggtatctcagctttattcttcatagccaaaaatctgaaacaacccaaatgtccaccaacaggtgcatagacagacaactgggtatattcatacaaaagaataatcagcaataaaaagaaacaaaccactgatgcccacacaacatgcacaaatcccaaaaacatcagagtggaagtagccacacaaaaacaaatacattttgcataatttccatttatataaaattatagaaaagataaaaataatctgtagtgttagaagggagattcatggttacctggggtcagtgatgggagtgagatttgaccgggaagagaaacaagggaatattttggagtaatggaaatgttctacatcttgacaggagctgtggttgcccagccacagacatttttcaaagctcatagaact i ponAbe2.chr12 C 0 C 0 s papHam1.Contig550112 412 473 - 1823 cctccacattattgccagcacatcgtattggcagtgttttgtttagctattatgatgggtgtaatgtggtatctcagctttattcttcatagccaaaactctg----aacccaaatgtccaccagcaggtgcacagacagacaactgggtatattcatacaaaggaatattcagcaataaaaagaaacaaaccactgatgcacacacaacacgcacaaatcccaaaaccatcagagtggaagtagccagacaaaaacaaacactttttgcataatttccatttatataaaattatagaaaagacaaaaataatctatagtgttagaagggagattagcggttacctggggtcagtgat-ggagtgagatttgactgggaagagaaacaagggaatattttggagtaatggaagtgtcctacatcttgacaggagctgtggttgcacagccacagacatttttcaaagctcatagaatt i papHam1.Contig550112 C 0 C 0 s bosTau4.chr17 29941487 434 - 76506943 -tctcacaccattgccaacactttgtcttgga--------gtctggccattctGA---GTATCATGTTGCATCTTTGGTTAattcttaagagttgaaaacatgaaacagtccaaatgtccatcgataggtgaacggatggactaactggtgtaaccatagaatgaactactcagcaataaaa--taacaggctactgatgcc-----------cacaaatttcaaaaacattcagctg-----------acacaaaggattacttattgtataa-ttccattcatatgaaattctagaaaagataaaaataatccacagggttgaatgtgagatcaatggttgc----ggttagcagtaggagtgagatctgactgggaagaggtat-aggaaacatttt-gagtgctggaaa-gttgtacatcttggtagcagtggtggttatatagactcagacatttatcaaaatgcatggaact i bosTau4.chr17 C 0 I 204 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 168518 3850 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=85226.000000 s hg19.chrUn_gl000223 35247 347 + 180455 tgaactatacattagaaatatgtacacttagccagatgtggtggggtgtgcaccttagttccaactactaggcaggctgaggcaggacaatcacttcagcataggagttcaagtccaacctaggaaacatagcgagacccaatctctaaag-aaaaaaaagaaaagtaagtatacttatttgtatgcaattttttttgagacagagtctcgctctgtcacccaggctggagtgccgtggcacaatctcggctcactgcaacctccacttcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacctgccacatggccagctaattt s ponAbe2.chr12 194539 345 - 136387465 tgaattatacattagaaatatgtacacttagccagatgtggt--gatgtgcaccttagttccaactactaggcaggctgaggcaggacaatcacttcagcataggagttcaagtccaacctaggaaacatagcgagacccaatctctaaag-aaaaaaaagaaaagtaagtatacttatttgtatgcaattttttttgagacagagtctcgctctgtcacccaggctggagtgcagtcgcacaatctcggctcactgcaacctccacttcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacctgccacatgcccagctaattt i ponAbe2.chr12 C 0 C 0 s papHam1.Contig550112 885 334 - 1823 tgaattatacattagaaatacgtacacttAgccagatgtggt--ggtgtgcaccttagttccaactactaggcaggctgaggcaggacaatcacttcagcataggagttcaagtccaacctaggaaacatagtgagacccaatctctaaagaaaaaaaaagaaaaGTAAGTACATTTATTTATACCCAA-tttttttgagacagagtctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctctacttcctgggttcaagtgattctcctgcctcagcctcttgagtagctgggatta-----------ctcaatcccagctacttt i papHam1.Contig550112 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e panTro2.chr12 160211 2159 - 135371336 M e rheMac2.chr11 168518 3850 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29941921 204 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=81081.000000 s hg19.chrUn_gl000223 35594 153 + 180455 tttgtatttatagtagagacgtggtttcaccatgttggccaggctggtcttgaattcctggcctcaagtgatccatctgcctcagccttgcaaagtgctgggattacaggcatgagccaccatgcctggctctatgcaaattatatcaataaa s ponAbe2.chr12 194884 152 - 136387465 tttgtatttatagtagagacatggtttcaccatgttggccaggctggtcttgaattcctggcctcaagtgatccatctgcctcagccttgc-aagtgctgggattacaggcatgagccaccatgcctggctctatgcaaattatatcaataaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 162370 153 - 135371336 tttgtagttatggtagagacgtggtttctccatgttggtcaggctggtcttgaatttctggcctcaagtgatccatctgcctcagccttgcaaagtgctgggattacaggcatgagccaccatgcctggctCTATGCAAATTATATCAATAAA i panTro2.chr12 M 2159 C 0 s papHam1.Contig550112 1219 153 - 1823 tttgtatttatagtagagacggggtttcaccatgttggccaggctggtcttgaattcctggcctcaagtgatccatctgcctcagccttgcaaagtgctgggattacaggcatgagccaccatgcctggcTATATGCAAATTATATCAATAAC i papHam1.Contig550112 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 168518 3850 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29941921 204 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=125923.000000 s hg19.chrUn_gl000223 35747 145 + 180455 aattctaaaTGTTTTGAAGAAATAACAAGAATTGATAgcagtggctcaagcctgtaatcccagcactttgggaagccaaggcaggcagattgcttgcacccaagacttagagaccagcctgggaaacatggtgaaactcatctct s panTro2.chr12 162523 145 - 135371336 AATTCTAAATGTTTTGAAGAAATAACAAGAATTGATAgcagtggctcaagcctgtaatcccagcactttgggaagccaaggcaggcagattgcttgcacccaagacttagagaccagcctgggaaacatggtgaaactcatctct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 195036 143 - 136387465 aattctaaaTGTTTTGAAGAAATAATAAGAATTGATAgcagtggctcaagcctgtaatcccagcactttgggaagccaaggcaggcagattgcttgcacccaagacttagagaccagcctgggaaacatggtgaaactcatct-- i ponAbe2.chr12 C 0 I 255 s rheMac2.chr11 172368 145 - 134511895 AATTTTAGATGTTTTGAAGAAATAATAAGAATTCATAgcagtggctcaagcctgtaatcccagcactttgggaagccaaggcaggcagattgcttgcacccaagagttagagaccagcctggaaaacatcgcgatactcatctct i rheMac2.chr11 I 3850 C 0 s papHam1.Contig550112 1372 145 - 1823 AATTTTAGATGTTTTGAAGAAATAATAAGAATTCATAgcagtggctcaagcctgtaatcccagcactttgggaagccaaggcaggcagattgcttgcacccaagagttagagaccagcctggaaaacatcgcgatactcatctct i papHam1.Contig550112 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29941921 204 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=133959.000000 s hg19.chrUn_gl000223 35892 162 + 180455 actaaaagttattcgggcatggtggtgtgcacctgtaacccagctattcgggaggctgaggtgggaggatcacctgagcctgggatgtcgaggctgcagtgaaccagagctccactgcactccagcctggatgacagagtgagaccctatctgagaagaa---aa s papHam1.Contig550112 1517 165 - 1823 actaaaagttattcaggcatggtggtgcgcacctgtaacccagctatttgggaggctgaggtgggaggatcacttcagcctgggaggtcaaggctgcagtgaaccagagtgccactgcactccagactagatgacagagtgagactatgtctgagagaaaaaaaa i papHam1.Contig550112 C 0 C 0 s rheMac2.chr11 172513 165 - 134511895 actaaaagttattcaggcatggtggtgcacacctgtaacccagctatttgggaggctgaggtgggaggatcacttcagcctgggaggtcaaggctgcagtgaaccagagtgccagtgcactccagactagatgacagagtgagactatgtctgagagaaaaaaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 195434 163 - 136387465 actaaaagttattcgggcatggtggtgagcacctgtaacccagctatttgggaggctgaggtgggaagatcacctgagcccgggaggtcgaggctgcagtgaaccagagctccactgcactccagcctggatgacagagtgagaccctatttgagaagaa--aaa i ponAbe2.chr12 I 255 C 0 s panTro2.chr12 162668 165 - 135371336 actaaaagttattcgggcatggtggtgtgcacctgtaacccagctattcgggaggctgaggtgggaggatcacctgagcctgggatgtcgaggctgcagtgaaccagagctccactgcactccagcctggatgacggagtgagaccctatctgagaagaagaaaa i panTro2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29941921 204 - 76506943 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=56782.000000 s hg19.chrUn_gl000223 36054 58 + 180455 aa-----------aaagcaaagcaaataaaCAGACTAAAATTTGTTAAAGGAAT-ATTTAAAACACAGCG s panTro2.chr12 162833 58 - 135371336 aa-----------aaaGCAAAGCAAATAAACAGACTAAAATTTGTTAAAGGAAT-ATTTAAAACATAGCG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 195597 58 - 136387465 aa-----------aaagcaaagcaaataaaCAGACTAAAATTTGTTAAAGAAAT-ATTTAAAACATAGCG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 172678 69 - 134511895 aaaaaaaaaaaGCAAAGCAAAGCAAATAAATAGACTAAAATTTGTTAAAGGAAT-ATTTAAAACATATCG i rheMac2.chr11 C 0 C 0 s papHam1.Contig550112 1682 61 - 1823 aaaaa--------agaacaaaGCAAATAAATAGACTAAAATTTGTTAAAGGAAT-ATTTAAAACATATCG i papHam1.Contig550112 C 0 C 0 s bosTau4.chr17 29942125 59 - 76506943 AA-----------GAAAGAATGAAGATAGGTAGACTAAAACTTATTAAAGGAACAATTTAAAAATTTTCG i bosTau4.chr17 I 204 I 390 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124605 292 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=71374.000000 s hg19.chrUn_gl000223 36112 73 + 180455 TGTCTGACCCCACAGAAAGCAACAGTTGA-------ACCAGAGATGGT--------GCGTGGGCCCTGTGGAGAACAGATCTGAAAtt s panTro2.chr12 162891 73 - 135371336 TGTCTGACCCCACAGAAAGCAACAGTTGA-------ACCAGAGATGGT--------GCCTGGGCCCTGTGGAGAACAGATCTGAAAtt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 195655 73 - 136387465 TGTCTGACCCCACAGAAAGCAACAGTTGA-------ACCAGAGATGGT--------GCCTGGGCCCTGTGGAGAACAGATCTGTAAtt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 172747 81 - 134511895 TATCTGACCCCACAGAAAGCAACAGTTGAACCAGAGACCAGAGATGGT-------GGCCTGGGCCCTGTGGAGAACAGATCTGTAAtt i rheMac2.chr11 C 0 C 0 s papHam1.Contig550112 1743 75 - 1823 TATCTGACCCCACAGAAAGCAACAGTTGAACCAGAGACCAGAGATGGT-------GGCCTGGGCCCTGTGGAGAACAGATCT------ i papHam1.Contig550112 C 0 N 0 s equCab2.chr8 64124897 80 - 94057673 ggcataaccCCATAGCAGGCAGAAATTG--------GTCAGAGATGCTGGCCTGGGGCCTGGGCCCTGTGGAGGACGGGTCTGTAAct i equCab2.chr8 I 292 I 65 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29942184 390 - 76506943 I e canFam2.chr26 3168937 767 + 42029645 I a score=221229.000000 s hg19.chrUn_gl000223 36185 296 + 180455 ttttttttt-----gaggcagagtcttgctctgtcgcccaggctggagtgcagtggcgtgatctcagctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgcccggcaaattttttgtattttttttttt-agtagagacgggatttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcagcctccaaaagtgctgggattacaggcatgagccaccgcgcccggcc s papHam1.Contig625691 236 286 - 978 ttttttctt-----gagatggagtcttgctctgtcacccaggctggagtgcagtttcgccatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagtcttccgagtagctgggactacagg----ccccacaacgcctggctaatttttggtgttttt-------agtagagatggagtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatccacccgcttcagcctcccaaagtgctgggattacaggagtgagccaccgcgcccggcT i papHam1.Contig625691 N 0 C 0 s rheMac2.chr11 172828 292 - 134511895 ttttttttttttttgagacggagtctggctgtgtggcccaggctggagtgcagtggccggatctcagctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggaccacagg---cccccacatcgcctggctagtttttggtgttttt-------agtagagatggggtttcaccgtgttagccatgatggtctcaatctcctgacctcatgatccacccgcttcggcctcccaaagtgctgggattacaggagtgagccaccgcgcctggcT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 195728 297 - 136387465 ttttttttttttttgaggcagagtctcg--ctgtcgcccaggctggagtgcagtggcatgatctcagctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccatgcccggctaattttttgtatttttttttt--agtagagatgggatttcaccgtgttagccaggatggtctcaatctcctgacctcatgatcca-ccacctcagcctccaaaagtactgggattacaggcatgagccaccgcgcccggcc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 162964 301 - 135371336 ttttttttt-ttttgaggcagagtcttgctctgtcgcccaggctggagtgcagtggcgtgatctcagctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccacgcccggcaaattttttgtattttttttttttagtagagacgggatttcaccgtgttagccaggatggtctcgatctcctggcctcatgatccgcccgcctcagcctccaaaagtgctgggattacaggcatgagccaccgcgcccggcc i panTro2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29942184 390 - 76506943 I e equCab2.chr8 64124977 65 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=70522.000000 s hg19.chrUn_gl000223 36481 65 + 180455 CAGATCTGTAATTTTTATGTAAGAAGTAGCAAGTACCGAAAGTGGCCTAATAATACATATATGTG s panTro2.chr12 163265 65 - 135371336 CAGATCTGTAGTTTTTATGTAAGAAGTAGCAAGTACCGAAAGTGGCCTAATAATACGTATATGTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 196025 65 - 136387465 CAGATCTGTAATTTTTATgtaagaagtagcaagtactgaaagtggcctaataatacatatatgtg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 173120 65 - 134511895 CAGATCTGTAATTTTTATGTAAGAAGTAGCAAGTACCGAAAGTGGCCTAATAATACATATATGTG i rheMac2.chr11 C 0 C 0 s papHam1.Contig625691 522 65 - 978 CAGATCTGTAATTTTTATGTAAGAAGTAGCAAGTACCGAAAGTGGCCTAATAATACATATATGTG i papHam1.Contig625691 C 0 C 0 s bosTau4.chr17 29942574 62 - 76506943 CAGCTCTATCACTATTTTGTAAAGGgtagcaaatacaga---tgcactggtaacacacatatgcc i bosTau4.chr17 I 390 I 21 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64124977 65 - 94057673 I e canFam2.chr26 3168937 767 + 42029645 I a score=261710.000000 s hg19.chrUn_gl000223 36546 193 + 180455 CTcgaagatttaagggcctgacatttatgaagttttt---agttcagtgaatggaggaatgctaagacatccctttaagggaaaaggcaagttattgctatttgtaccccaca-catgcagagataaaatgcttggtagacctcgttggatttggaaagcagcatagaacacac---ttggaaattctattctaacAAAT s panTro2.chr12 163330 193 - 135371336 CTcgaagatttaagggcctgacatttatgaagttttt---agttcagtgaacggaggaatgctaagacatccctttaagggaaaaggcaagttattgctatttgtaccccaca-catgcagaggtaaaatgcttggtagacctcgttggatttggaaagcagcatagaacacac---ttggaaattctattctaacAAAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 196090 193 - 136387465 ctcgaagatttaagggccccacatttatgaagttttt---agttcagtgaatggaggaatgctaagacatccctttaaggcaaaaggcaagttgttgctatttgtaccccaca-tatgcagaggtaaaatgcttggtagacctcgttggatttggaaagcagcatagaacacac---ttggaaattctattctaacAAAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 173185 193 - 134511895 CTAGaagatttaagggcctgacatttatgaaattttt---agttcagtgaatggaggaatgctaagacatccctttaagggaaaaggcaagttattgcaatttgtactccacc-catgcagaggtaaaatgcttggtagacctctttggatttggaaagcagcatagaacacat---ttggaaattctattctaacAAAT i rheMac2.chr11 C 0 C 0 s papHam1.Contig625691 587 193 - 978 CTAGaagatttaagggcctgacatttatgaaattttt---agttcagtgaatggaggaatgctaagacatccctttaagggaaaaggcaagttattgcaatttgtactccacg-catgcagaggtaaaatgcttggtagacctctttggatttggaaagcagcatagaacacac---ttggaaattctattctaacAAAT i papHam1.Contig625691 C 0 C 0 s bosTau4.chr17 29942657 189 - 76506943 cacaaagatttagaagcctgatatcaatgatgtttttagaagtttagtgaact-aggaatgctgagacagccctgtaaagtaagggacaagttatttaaattcacacttgacaccacaaagaggtataacacttagtggagctctctgcattaggaaggcattttggaacacac---ttgaaaattctactgt------- i bosTau4.chr17 I 21 I 986 s equCab2.chr8 64125042 200 - 94057673 cgcaaaaatttaggggcctcgtaacagtgacatgtttagaagtttagtgaactgaggaatgctaggacatccctccaaggtaagggacaagttattaaaattcacaccccacaccagaaagaggtacacggcttggtggacctctctgcatttggaaggcagtatggaacgcacagtatggaaattcctctctgaccaat i equCab2.chr8 I 65 I 1296 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e canFam2.chr26 3168937 767 + 42029645 I a score=192952.000000 s hg19.chrUn_gl000223 36739 146 + 180455 AGGCCTCTTGATGGATCCCAAGTTGTACAGTGTGTGCTTGTGATGCAACTGCAAGGTCCATTTTCAAAGATACCTTGTTTCTTCTATATTTTGGGTTCTCAAAATAAGGTAAGACATTCACAAGCTGTTCATCTATTTTGGCCTTT s panTro2.chr12 163523 145 - 135371336 AGGCC-CTTGATGGATCCCAAGTTGTACAATGTGTGCTTGTGATGCAACTGCAAGGTCCATTTTCAAAGATACCTCGTTTCTTCTATATTTTGGGTTCTCAAAATAAGGTAAGACATTCACAAGTTGTTCATCTATTTTGGCCTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 196283 146 - 136387465 AGGCCTCTTGATGGATCCCAAGTTGCACAGCGTGTGCTTGTGATGCAACTGCAAGGTCCATTTTCAAAGATACCTCGTTTCTTCTATATTTTGGGTTCTCAAAATAAGGTAAGACCTTCACAAGTTGTTCATCTATTCTGGCCTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 173378 131 - 134511895 AGGCCTCTTGATGGATCCCAAGTTGTATAGCGTAAGCTTGTGATGCAATTG-AAGCTCCATTTTCAAAGATACCTCATTTCTTCTGTATTTTTGGTTCTCAAAATAAGGTAAGACCTTGACAAGTTTTTCAT-------------- i rheMac2.chr11 C 0 I 211 s papHam1.Contig625691 780 145 - 978 AGGCCTCTTGATGAATCCCAAGTTGTATAGCGTGTGCTTGTGATGCAACTG-AAGCTCCATTTTCAAAGATACCTCGTTTCTTCTGTATTTTTGGTTCTCCAAATAAGGTAAGACCTTGACAAGTTGTTCATCTATTTTGGCCttt i papHam1.Contig625691 C 0 N 0 s bosTau4.chr17 29943832 140 - 76506943 AGGCCTATTGACTGTCCCTAAATTTTACTGTATGTACTTGTGAACCAATGACAGGGTCTGTCCTCAATGACATCCAA---CTTCTATATTTTTGATATTACA---AAGAtaagtccttcataagttgtccctctattttggtcctt i bosTau4.chr17 I 986 C 0 s vicPac1.scaffold_111420 426 138 - 1631 -GGCCTGCTGACAGTTCCTGAGTCCTGCAGTATGTACTTGTGACCCAATTACAGGGTCTAGCCTAAAGGATATCCAG---CGTCTATAttttctttattata---aagataagaccttcacaaactgtccatctgttctggt-ctt i vicPac1.scaffold_111420 N 0 C 0 s canFam2.chr26 3169704 134 + 42029645 TGGCCTATTGATGATTCCTTGGTTTTATAGTATATACTTGTGACCCAATTATCAGGT----CCTCAAGGATATCCAG---CTTCTACATTTTT--TATTATA---Gaaataagaccttcataagctgcccatctgttttggctctt i canFam2.chr26 I 767 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64125242 1296 - 94057673 I a score=153996.000000 s hg19.chrUn_gl000223 36885 106 + 180455 AAGATCCC-TGATCAGTTAACCACTTCCAAAGGTTTATGTAGGTTTAACAATTCTCATCACCATTATGACCATGAACC----TCCTGCACTAACCATGCCTGTCTTGCTCC s rheMac2.chr11 173720 106 - 134511895 AAGATCTC-TGATCAGTTAACCACTTCCAAAGGTTTACGTAGGTTTAACAATTCTCATTACCATTATGATCATGACCC----TCCCGCACTAACCATGCCTATCTTGCTGC i rheMac2.chr11 I 211 C 0 s ponAbe2.chr12 196429 106 - 136387465 AAGATCCC-TGATCAGTTAACCACTTCCAAAGGTTTACGTACGTTTAACAATTCTCATCACCATTATGACCATGAACC----TCCTGCACTAACCATGCCTGTCTTGCTCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 163668 106 - 135371336 AAGATCCC-TGATCAGTTAACCACTTCCAAAGGTTTATGTAGGTTTAGCAATTCTCATCACCATTATGACCATGAACC----TCCTGCACTAACCATGCCTGTCTTGCTCC i panTro2.chr12 C 0 C 0 s papHam1.Contig306504 3 105 - 1686 -AGATCTC-TGATCAGTTAACCACTTCCAAAGGTTTATGTAGGTTTAACAATTCTCATTACCATTATGATCATGACCC----TCCCGCACTAACCATGCCTATCTTGCTGC i papHam1.Contig306504 N 0 C 0 s bosTau4.chr17 29943972 85 - 76506943 aagatcccataatcaattaaccacttccaaagacttctgtaggtcaagcaattctgattacCACAATGACCTTGAGCC----CACTGTA---------------------- i bosTau4.chr17 C 0 I 1004 s vicPac1.scaffold_111420 564 111 - 1631 aagatcacatgatcaactagccacttccaagggtttctgtaggtccagcagtcctggtcaccaccatgacctcaagcctgcacacagcagtaaccatacccaccttgcctc i vicPac1.scaffold_111420 C 0 C 0 s canFam2.chr26 3169838 105 + 42029645 tagaccccaggatcaattagccacttccacagttgcctgcagcaacagcaattctgattaccatccagatcttgaggc----tatcacagtaatcctgccattttgtct-- i canFam2.chr26 C 0 I 198 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e equCab2.chr8 64125242 1296 - 94057673 I a score=106873.000000 s hg19.chrUn_gl000223 36991 98 + 180455 TTGTGAGTAAATTCTGC--TGAGAACTGTTCCATTGCAGAA-CCTATCATCCCCTTTGACATCAGGAATCTCATTTTAATGACAGTATCTATAACACATAA s rheMac2.chr11 173826 100 - 134511895 TTGTGAGTAAATTCTGCTGTGAGAACTGTTCCATTCCAGAA-CCTATCATCCCTTTTGACATCAGGAATCTCATTTTACTGTCAGTATCTATAACACACAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 196535 98 - 136387465 TTGTGAGTAAATTCTGC--TGAGAACTGTTCCCTTCCAGAA-CGTACCATCCCCTTTGACATCAGGAATCTCATTTTAATGACAGTATCTATAACACACAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 163774 98 - 135371336 TTGTGAGTAAATTCTGC--TGAGAACTGTTCCATTCCAGAA-CCTATCATCCCCTTTGACATCAGGAATCTCATTTTAATGACAGTATCTATAACACACAA i panTro2.chr12 C 0 C 0 s papHam1.Contig306504 108 100 - 1686 TTGTGAGTAAATTCTGCTGTGAGAACTGTTCCATTCCAGAA-CCTGTCATCCCTTTTGACATCAGGAATCTCATTTTACTGTCAGTATCTATAACACACAA i papHam1.Contig306504 C 0 C 0 s vicPac1.scaffold_111420 675 99 - 1631 tcagaactaaatttggccaagaagtccgttccatcccagaatcctagaggctcctttgacatcaggggtctcacttcagc--tgccaccttcaccgctggt i vicPac1.scaffold_111420 C 0 C 0 s canFam2.chr26 3170141 97 + 42029645 ttcaaattaaattctgctactagacctgttccatcacagaacccaggagtctcctttgatatcaaggacctcactttgg----ggcacccttgatgcttag i canFam2.chr26 I 198 I 5 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29944057 1004 - 76506943 I e equCab2.chr8 64125242 1296 - 94057673 I a score=95683.000000 s hg19.chrUn_gl000223 37089 59 + 180455 CTATACCCACATTTTTACATGAGGCTGGTTCTCCCTTCACCAAGT--AATTTCTCATGGTG------ s rheMac2.chr11 173926 59 - 134511895 CTATATCCACATTTTTACATgaggctggttcgccctttaccaagt--aatttctcatggtg------ i rheMac2.chr11 C 0 I 318 s ponAbe2.chr12 196633 59 - 136387465 CTATACCCACATTTTTACATGAGGCTGGTTCTCCCTTCACCAAGT--AATTTCTCATGGTG------ i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 163872 59 - 135371336 TTATACCCACATTTTTACATGAGGCTGGTTCTCCCTTCACCAAGT--AATTTCTCATGGTG------ i panTro2.chr12 C 0 C 0 s papHam1.Contig306504 208 59 - 1686 CTACATCCACAttttcacatgaggctgcttctccctttaccaagt--aacttctcatggtg------ i papHam1.Contig306504 C 0 C 0 s vicPac1.scaffold_111420 774 65 - 1631 ctacaAGCACATTTTTCTAGGATACTGGCACTCCCCTCACCTGGT--AATTTCTCAAGGCCCTAGCA i vicPac1.scaffold_111420 C 0 C 0 s equCab2.chr8 64126538 65 - 94057673 ccATAAGCACATTTTTACaggatgctggtgatcccctcacccagg--aatttctcaatgccctggta i equCab2.chr8 I 1296 C 0 s canFam2.chr26 3170243 58 + 42029645 caatgagcacatatttataagaccctggtgctcctcttacccacattaatttctcgaT--------- i canFam2.chr26 I 5 C 0 s bosTau4.chr17 29945061 60 - 76506943 ----ACTCACATTTTCCTaggatgctggggatcccatcacccagc--agtttctcagggccctggc- i bosTau4.chr17 I 1004 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I a score=706409.000000 s hg19.chrUn_gl000223 37148 353 + 180455 AAAGAACTGTCCTCTGGCCCCTGTTGGGGGTCAAAATCGGAGGAATGAGTGAGTGGGTTACTTATGACAAATCTATATTAACAAT---ATTTCCTTAAATCCTTAGATTTATGCGAAGAAATTTTTGACATCTCTATTTTACCTTAATATTGGCCTCTGTCAAGTCC-AGCTTTCAGCTAATCAGCTAAGTAGAAACAAAGATACAAATAGATCAATAAAACCAAAGTCTTGTTTATTGTAAAAGCTAATAAATAAACAAATTTTGCCAAGATATAACAAGaataaaagtaaa-a-aataaat-attat--taatgaaaaaaaGCAATATAACTACAAATACAGAAGAGATTCCAAATTTGG s panTro2.chr12 163931 353 - 135371336 AAAGAACTGTCCTCTGGCCCCTGTTGTGGGTCAAAATCGGAGGAATGAGTGAGTGGATTACTTATGACAAATCTATATTAACAAT---ATGTCCTTAAATCCTTAGATTCATGCCAAGAAATTTTTGACATCTCTACTTTACCTTAATATTGGCCTCTGTCAAGTCC-AGCTTTCAGCTAATCAGCTAAGTAGaaacaaagatacaaatagatcagtaaaagcaaagtcttgttcattgtaaaagctaataaataaacaaattttgccaagatataacaagaataaaagtaaa-a-aataaat-attat--taatgaaaaaaagcaatataactacaaatacagaAGAGATTCCAAATTTGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 196692 352 - 136387465 AAAGAGCTGTCCTCTGGCCCCTGTTGGGGGTCAAAATCGGAGGAATGAGTAAGTGGATTACTTATGACAAATCTATATTAACAAT---ATTTCCTTAAATCCTTAGATTTATGCCAAGAAATTTTTGACATCGCTACTTTACCTTAATATTGGCCTCTGTCAAGTCC-AGCTTTCAGCTAATCAGCTAAGTAGaaacaaagatacaaatagatcaataaaaccaaagtcttgtttattgtaaaagctaataaataaataaattttgccaagatataacaagaataaaagtaaa-a-agtaaat-attat--taatg-aaaaaagcaatataactacaaatacagaAGAGATTCCAAATTTGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 174303 351 - 134511895 aaagaactgtcctctggcccctgttgggggtcaaaatcagaggaattagtgagtgtagtacttatgacaaatctatattaataat---atttccttaaatccctatatttatgccaataaatttttgacatctctactttaccttaatattggcctctgtcaagttc-agctttcagctaatcagctaagtagaAACAAAGATACAAATAGATCAATAAAACCAAAGTCTTGTTTATTGTAAAAGCTAATAAATACACAAATTTTGCCAAGTTAAAACAAGaataaaagtaaa-a-aataaat-attat--taat--aaaaaaGCAATATAACTACAAATACAGAAGAGCTTCCAAATTTGG i rheMac2.chr11 I 318 C 0 s papHam1.Contig306504 267 351 - 1686 aaagaactgtcctctggcccctgctgggggtcaaaatcagaggaattagtgagtgtagtacttatgacaaatctatattaataat---atttccttaaatcCCTATATTTATGCCAATACATTTTTGACATCTCTACTTTACCTTAATATTGGCCTCTGTCAAGTTC-AGCTTTCAGCTAATCAGCTAAGTAGAAACAAAGATACAAATAGATCAATAAAACCAAAGTCTTGTTTATTGTAAAAGCTAATAAATACACAAATTTTGCCAAGTTAAAACAAGaataaaagtaaa-a-aataaat-attat--taat--aaaaaaGCAATATAACTACAAATACAGAAGAGATTCCAAATTTGG i papHam1.Contig306504 C 0 C 0 s vicPac1.scaffold_111420 839 340 - 1631 GAAGAAGTGTCTTCTGGTCCCTCCTGGAGGTCATATTTGGGAGACCAAGTGAGTGAGTCACTCATGATAAATCTATATCAACAATCACATTTCCTTAAATCCCTGTTTT-CTGCCAAAGAATTTCTCA-----------TATCTTAGTACTGGCCTCTGCCAAGTCC-AGCTTTCAGCTaattaaccaaacagaaacgaaggtactgacaagtcaacaaaatcaaaatctcgttccttataaaagctaataaataaac---ttccgccaacatggagccagaataaaagagaa-t-taataac-attat--taatg-aaaaattcaacataactacagatacagaggagattccaaaattag i vicPac1.scaffold_111420 C 0 N 0 s equCab2.chr8 64126603 338 - 94057673 aaagaagtgtcttctggcccctcttggaggtcaaaattgagggaattggtgagtggattactcatgacaaatctatatcaacaatcatatttccttaaatttctatatt-ataccaaggaatttctga-----------catcttagtaatggcctctgtcaagtcc-agctttcagctaatcaactaaacagaAACAATGATACTGACAGATCAACAAAATCATCATCTTGTTCACTGTAAAAGCTAATAGACAAAC---TTCTGCCAAGATGAA---AGAATAAAACAGAA-TGTACCAATAAATATTATAATG-AAAAATTCAACATAAC--TAGTTACAGAAAATATTCCAAAATTA- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3170301 317 + 42029645 ----------------GTCCCTCTTGGAGGTCAAGGTTGGGAGAATTGGTAAATGGATTACTCATAACAAACCTATATC----ATCACATTTCCTTAAATTCATATATT-ATGCCAAGGAGTTTTTGACAGC------CCATCTTTGTATTGGCTTCTGTCAAGTCCAAGATTTCAGATAATAAACTGAACAGAAAGAAAGATACTGATAGATTAACAAAATCAAAATCTTGTTCATTGTAAAAACTAACAGGCAGAC---TTTTGCCAAGATGAAATGAGAATAAAAGAGAA-T-CACAAATAAACAT--AAATG-AAAAAATCAGCATAAC-ACAGATACAGAAGAGATCC--------- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29945121 323 - 76506943 --agaagtgtcttctagtccctcttggaggtcaaaattggggaaattggtgagtaaattactcatgataaatctacatcaacaaccatatttccttcagtatttATATT-ATGGCAGGGCATTTCTGG-----------TATCTTAGTATTGGCCTCTGCCCGGTTC-AGCTTTCAGCTaattaactaaacagaaacaaaggtaccaatagatcaacaaaatcaaaatcttgctcactgtaaaagctaatagacatac---ttctgccaagatgga---ataagaaaacagaatt-tattgat-attat--taatg-aacaattcaatgtaa------gcacagagaagattcca------- i bosTau4.chr17 C 0 I 4210 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I a score=223956.000000 s hg19.chrUn_gl000223 37501 255 + 180455 GGttttttttgagatggggtctcactctgtcacccaactaaggttcagtggtgtgttcatggctcactgcaacctcaaactctcaggctaaagcaatcctcccgcctcagcctcccaggtagctgggactacaggcaagcacaaccacacccggctaatttttttaattttttgtagagatggagtctcacttgtttttttgcccaggctggtctcgaactcctggactcaagcgatcctcccaccttgacctcc s panTro2.chr12 164284 255 - 135371336 GGttttttttgagatggggtctcactctgtcacccaactaaggttcagtggtgtgttcatggctcactgcaacctcaaactctcaggctaaagcaatcctcccgcctcagcctcccaggtagctgggactacaggcaagcacaaccacacccggctaattttttaaattttttgtagagatggagtctcacttgtttttttgcccaggctggtctcgaactcctggactcaagcgatcctcccaccttggcctcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 197044 255 - 136387465 GGGtttttttgagatggggtctcactctgtcacccaactaaggttcagtggtgtgttcatggctcactgcaacctcaaactctcaggctgaagcaatcctcccacctcagcctcccaagtagctgggactacaggcaagcacaaccacgcccggctaattttttaaattttttgtagagatggagtctcacttgtttttttgcccaggctggtctcaaactcctggactcaagcgatccacccaccttggcctcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 174654 254 - 134511895 GG-tttttttgagatggggtctcactctgtcacccaactaaagttcagtggtgtgttcatggctcactgcaacctcgaacactcaggctgaagcaatcctcccacctcagcctcccaagcagctgggactacaggcaagcaccaccacgcccagctaatttttaaaattttttgtagagatggagtctcacttgctatgttgcccaggctggtctcgaactcctggactcaagcgatcctcccaccttggcctct i rheMac2.chr11 C 0 I 336 s papHam1.Contig306504 618 254 - 1686 GG-tttttttgagatggggtctcactctgtcacccaactaaagttcagtggtgtgttcatggctcactgcaacctcgaactctcaggctgaagcaatcctcccacctcagcctcccaagtagctgggactataggcaagcaccaccacgcccagctaattttttaaattttttgtagagatggagtctcacttgctatgttgcccaggctggtctcgaactcctggactcaagcgatcctcccaccttggcctct i papHam1.Contig306504 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64126941 0 - 94057673 C e canFam2.chr26 3170618 0 + 42029645 C a score=52637.000000 s hg19.chrUn_gl000223 37756 62 + 180455 caaagtgctagaattacaggcatgagccagcatgcccagcTGAGATTTTAAAATCAGTAGGA s papHam1.Contig306504 872 62 - 1686 caaagagctagaattataggcatgagccagcacgcccgTCTGAGATTTTAAAATCAGTAGGA i papHam1.Contig306504 C 0 C 0 s rheMac2.chr11 175244 62 - 134511895 CAAAGAGCTAGAATTATAGGCATGAGCCAGCACGCCCGTCTGAGATTTTAAAATCAGTAGGA i rheMac2.chr11 I 336 C 0 s ponAbe2.chr12 197299 62 - 136387465 caaagtgctagaattacaggcatgagccagcacgcccagctGAGATTTTAAAATCAGTAGGA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 164539 62 - 135371336 caaagtgctagaattacaggcatgagccagcatgcccagctGAGATTTTAAAATCAATAGGA i panTro2.chr12 C 0 C 0 s equCab2.chr8 64126941 34 - 94057673 ---------------------ATAAGAAAACATGT-------ATAATTTGAAGTCAATAAAT i equCab2.chr8 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e canFam2.chr26 3170618 0 + 42029645 C a score=462209.000000 s hg19.chrUn_gl000223 37818 455 + 180455 ACATATCTGTAATTTCATGTCAATAAATAGATATAATTAGTAGGAAAAAATCTACAAAAACGTCCTCAAGAATTGATAAAG--------CAGTGTGGAAAAACTGTGACTTACATGCTATCTTTTGTGGTAACTTGctggatttttatacggtttgtctccagtcctctagaatgcatgtg--------gtgtctccaacctgctggccacttcctacctatcctgcctgactgacatgactttgctgccatg-tgtattactgtgatgttctataaaatgt---tcag------tctattcagattatattatgatggctgacagccctgggtaaaactgtgaatgcacagtattgtctgtctcatgttaatgc-tacattttctgatcctttttcctgaattgaataaaaagaattggttttccaaatcaaaggccac-tgccacatacccaaggccacttaaatctgccttagaaacaat s panTro2.chr12 164601 426 - 135371336 ACATATCTGTAATTTCATGTCAATAAATAGATATAATTAGTAGGAAAAAATCTACAAAAACTTCCTCAAGAATTGATAAAG--------CAGTGTGGAAAAACTGTGACTTACATGCTATCTTTtgtggtaacttgctggatttttatacggtttgtctccagtcctctagaatgcatgtg--------gtgtctccaacctgctggccacttcctacctatcctgcctgactgacatgactttgctgccata-tgtattactgtgatgttctataaaatgt---tcag------tctattcagattatattatgaTGGCTGACAGCCCTGGGTAAAACTGTGAATGCACAGTATTGTCTGTCTCATGTTAATGC-TACATTTTCTGATCCTTTTTCCTGAATTGAAAAAAAAGAATTGGTTTTCCAAATCAAAGGCCAC-TGCCACATACCCA----------------------------- i panTro2.chr12 C 0 I 477 s ponAbe2.chr12 197361 455 - 136387465 ACATATCTGTAATTTCATGTCAATAAATATATATAATTAGTAGGAAAAAATCTACAAAAACTTCCTCAAGAATTGATAAAG--------CAGTGTGGAAAAACTGTGACTTATATGCTATCTTTtgtggtaacttgctggatttttatacggtttgtctccagtcctctagaatgcatgtg--------gtgtctccaacctgctggccacttcctacctatcctgcctgactgacatgactttgctgccata-tgtattactgtgatgttctgtaaaacat---tcag------tctattcagattatattatgaTGGCTGGCAGCCCTGggtaaacctgtgaatgcacagtattgtctgtcccatgttaacgc-tacattttctgattctttttcctgaatttaataaaaagaattggttttccaaatcaaaggccac-tgccacatacccaaggccacgtaaatctgctttagaaacaat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 175306 434 - 134511895 ACATATCTGTAATTTCATATCAATAAATATATAAAATTAGTAGGAAAAAATCGACAAAAACTTCCTCAAGAATTGATAAAG--------CAGTGTGGAAAAAC--TGAATTATATGCTATCTTTtgtggtaacttgctagatttttaaacggtttgtcaccaatcctctagaatgcatgtg--------gtgtctccaacctgctggccacttcctatttatcctgcctgactggcatgattttgctgccgtattgtattactgtgatgttctataaaatgt---tcagtctacttctattcagattatattatgacag------GCCTGGGGTAAAACTGCGAATGCACAGTATTGTCTGTCCCATGTTAATGCATACATTTTCTGATTCTTTTTCCTGAATAGAATAAAAAGAATTGATTTCCCA----------------------ACCCAAGACCACTGAAATCTGCTTTAGAAACAAT i rheMac2.chr11 C 0 C 0 s papHam1.Contig306504 934 434 - 1686 ACATATCTGTAATTTCATGTCAATAAATATATAAAATTAGTAGGAAAAAATCGACAAAAACTTCCTCAAGAATTGATAAAG--------CAGTGTGGAAAAAC--TGAATTATATGCTATCTTTtgtggtaacttgctagatttttaaacggtttgtcaccaatcctctagaatgcatgtg--------gtgtctccaacctgctggccacttcctacttatcctgcctgactgacatgattttgctgccgtattgtattactgtgatgttctataaaatgt---tcagtctacttctattcagattatattatgacag------gcctggggtaaaactgcgaatgcacagtattgtctgtcccatgttaatgcatacattttctgattctttttcctgaatagaataaaaagaattgatttcccg----------------------acccaagaccacttaaatctgctttagaaacaat i papHam1.Contig306504 C 0 C 0 s equCab2.chr8 64126975 443 - 94057673 --------------------------ATATAAATAACTAG--AGAAACAGCCTACCAAAACTTCCTAAATAATATATAAAGGAAATATATAATGC---AAAAATCGGAACCATGTGCTACCTCTtgtggtaagttgctaaacctttacagggcttgttgcccatcccctggaacacatgtagggtgtcagggtctccaacgtgccagccacctcttgctcatcctgcttgaccagagtgatttcactgctgtgatgggtcactgtgatgttcggtggaaggtccaatagtctgtgtctcttcagactgtaccacgacag------ccctcgggtaacactgtgagagt---ataatgtctgctccgtgttaatgcaaaccttctctgatcttttttcctgagtcggataaaaagaatgcatttgtcaaaaggaatgctgcataccatgtacccgagggcatataaatctgctttagaaacaat i equCab2.chr8 C 0 C 0 s canFam2.chr26 3170618 425 + 42029645 AAATAACTATAATTTGATACCAGTAAACATAAATTGCTAG--AGAAACACCCTACTCAAACTTCCTGAATAATATATAAAG-------------------CAATGGGAGTTGCATGTGATCTCCTGCAGTAAGTTCCT-AGTCTTCTCAGGATTTGTCACCTGT-CTCTAGAATGCACATGGGGCATCAGGGTCTCCAAAATGCTAGCCAGCTCTTCCTCATCCCAC-TGGTTGTAGCAATTTCACTGTTACCAG-----ACT---ATGTCCAG-----------ATAGTCTGGACCTCTTCAGAC--TATCA-GGCAG------CCCTGGGGGTAAACC-TGAATGT---GTAAtgtctgctccatgttaatgcaaacctcatccaatc--ctttcctgaataggataaaaagaatgtatctgtcaaatcaaagtctatatcctaggtacctgagagcatataaatcttctttaggaatagt i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I a score=54662.000000 s hg19.chrUn_gl000223 38273 65 + 180455 gtcatgtctgcaagtgggacatggacttggctgag-------ctcacctgtagtcat---------------tccctaggatttgtt s panTro2.chr12 165504 64 - 135371336 GTCATGTCTGCA-GTGGGACATGGACTTGGCTGAA-------CTCACCTGTAGTCAT---------------TCCCTAGGATTTGTT i panTro2.chr12 I 477 C 0 s ponAbe2.chr12 197816 65 - 136387465 gtcatgtctccaagtgggacatggacttggctgag-------ctcacctgtagtcat---------------ttcctaggatttgtc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 175740 65 - 134511895 GTCCTGTCTGCAAGCGGGACTTGGACCTGGCTAAG-------CTCACTTGTAGTCAA---------------TCtctaggatttgtc i rheMac2.chr11 C 0 C 0 s papHam1.Contig306504 1368 65 - 1686 gtcctgtctgcaagcgggacttggacctggctgag-------ctcacttgtagtcaa---------------tctctaggatttgtc i papHam1.Contig306504 C 0 C 0 s equCab2.chr8 64127418 71 - 94057673 gctatgtctgcaagtgaagctacta-ttggctgagcttgtgtcgggtctagaatcat---------------tcgccaggagtcgtt i equCab2.chr8 C 0 I 1792 s canFam2.chr26 3171043 83 + 42029645 atcacatctgctaagaggactattacttggttgaa--tgtgtctagttcataggcattgtagtctgtagggcttgccaggcttct-- i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I a score=131115.000000 s hg19.chrUn_gl000223 38338 132 + 180455 aa-------------------------------------tatcccaggggcactactaccacattctttaggtctttacgagtcgcactcatctctgtcaccccctccaa-----ctcttctccccaaaatgcaatattgtttttaatttatgatcttaccttctgggtgggat s panTro2.chr12 165568 132 - 135371336 AA-------------------------------------TATCCCAGGGGTACTACCACCAcattctttaggtctttacgagtcgcactcatctctgtcaccccctccag-----ctcttctccccaaaatgcaatattgttttcaatttatgatcttaccttctgggtgggat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 197881 169 - 136387465 aagccactatgaggtctgtgttatcgagttaaataatggtatcccaggagcactactaccacattctttaggtctttacgagtcacactcatctctgccaccccctccaa-----ctcttctccccaaaatgcaatattgtttttaatttatgatcttacctttggggtgggat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 175805 169 - 134511895 aggtcactacgaggtctctgttatcgaattaaataatggtatcacaggggcactactaccacattctttaggtctttacgagtcgcactcacctccgtcactccctccaa-----ctcttctccccaaaatgcaatattgtttttaatttgcgatcttacctttggggtgggat i rheMac2.chr11 C 0 C 0 s papHam1.Contig306504 1433 169 - 1686 aggtcactacgaggtctctgttatcgaattaaataatagtatcacaggggcactactaccacattctttaggtctttacgagtcgcactcacctccgtcactccctccaa-----ctcttctccccaaaatgcagtattgtttttaatttacaatcttacctttggggtaggat i papHam1.Contig306504 C 0 C 0 s canFam2.chr26 3171126 166 + 42029645 --------aaaaagcctgaagtactgaagtagatagcagtgtgatatcaactctaccagtgtatcctttaggtcttttagaatagcactcatttctgccaccccctctcatctccccctcccccccccagtgcattactgtgttttatctactatcctatccaaggagaaagtc i canFam2.chr26 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I a score=135719.000000 s hg19.chrUn_gl000223 38470 97 + 180455 tcagaggttttcacctggccttccccactatagtggcttttaaccaaagaccaatagtccaatgtagaaagtactccaactgccaaggatgtcaatc s panTro2.chr12 165700 97 - 135371336 tcagaggttttcacctggccttccccactatggtggcttttaaccaaagaccaatagtccaatgtagaaagtactccaactgccaaggatgtcaatc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0555560 0 97 - 1018 tcagaggttttcacctggccttccccactatggtggcttttaaccaaagaccaatagtacaatgtagaaagtactccaactgccaaggatgtcaatc i gorGor1.Supercontig_0555560 N 0 C 0 s ponAbe2.chr12 198050 97 - 136387465 tcagaggttttcatctcaccttccccactatggttgcttttaaccaaagaccaatagtccaatgtagaaagtactccaactgccaagaatatcaatc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 175974 84 - 134511895 tcagaggttttcacctggcctttcccactatagtggcttttaaccaaagaccaagaatccaatgtagaaagtactccaactgcc------------- i rheMac2.chr11 C 0 I 1123 s papHam1.Contig306504 1602 84 - 1686 tcagaggttttcacctggcctttcccactatagtggcttttaaccaaagaccaagaatccaatgtagaaagtgctccaactgcc------------- i papHam1.Contig306504 C 0 N 0 s canFam2.chr26 3171292 97 + 42029645 ttagggacctccatttggccttccccactatggtgagccttagccaaagaccagggatccagggccaggtttactccagctgccaagaatgCCAACC i canFam2.chr26 C 0 I 655 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I a score=32378.000000 s hg19.chrUn_gl000223 38567 80 + 180455 ccaattatacattcgaagaccaagcaaatgagtaatgcatgggtcaggg--------------------------------------tcactgggaccattggccccacagtaagcct s panTro2.chr12 165797 87 - 135371336 ccaattatacattcgaagaccaagcaaatgagtaatgcatgggtcaggg-------------------------------gtcagggtcactgggaccattggccccacagtaagcct i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0555560 97 118 - 1018 ccaattatacattcgaagaccaagcaaatgagtaatgtatgggtcagggtcactgggaccattggccctacagtgaatgggtcagggtcactgggaccattggccccacagtaagcct i gorGor1.Supercontig_0555560 C 0 C 0 s ponAbe2.chr12 198147 67 - 136387465 ccaattatacattcaaagaccaagc-aatgagtaatgcatgggtcagag--------------------------------------tcactgggaccattgGCCC------------ i ponAbe2.chr12 C 0 I 472 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 176058 1123 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I e canFam2.chr26 3171389 655 + 42029645 I a score=293011.000000 s hg19.chrUn_gl000223 38647 543 + 180455 aaatgtatgaccaggcctaaatacgctctcatgctggcggaggcatgataatgctatgaaagtctggtatcagtatcaactcagactttgcgtataatagtctttaaaatctctggatattaccctttacccagtgtataatgaaccaagtaagtgcccatcagtctttgacgaagggctggaggtgtcgtcacagtatatatttgccgtggtgtcatagggtctttccccttggggacccacctacctctttagtgtctttctgatctgaatattagctcaagttcaaggatcatggcattttactgaggcaactgcccttagcctcttgctcacccattctcatcttcttggactatgtttactaacaaatttcctggttgcctgtcttatctagtttatccttggggaagttatgttttactaaccatcttcacaagttcctgtgaatcaaaccctcttggctgtcacactgaccttactatttattataataaatgtgaatccctggcttctgccaattaagactcaccacccggcctt s ponAbe2.chr12 198686 541 - 136387465 AAATGTATGACCAGAGCT-AATACGCTGTCAGGctaacggaggcatgataatgctatgaaagtctggtatcagtatcaactcagactttgtgtataatagtctttaaaatctctggatattaccctttacccagtgtatagtcaaccaaataagtgcccatcagtctttgatgaaggactggaggtgtcatcacagtatatatttgccgtggtgtcatagggtctttccccttggggacccacctacctctttattgtctttctgatctgaatattagctcaAGTTCAAGGATCATGGCATTTTACTGAGGCAACTGCCCTTAGCCTCTTACTCACCCATTCTCATCTTCTTGGATTATGTTTACTAACAAATTTCCTGGTTGCCTGTCT-ATCTAGTTTATCCTTAGGGAAGTTAAGTTTTACTAACCATCTTCACAAGTTCCTGTGAATCAAAGCCTCTTGGCTGTCACACTGACCTTACTATTTATTATAATAAATGTGAATCCCTGGCTTCTGCCAATTAAGACTCACCACCCGGCCTT i ponAbe2.chr12 I 472 C 0 s gorGor1.Supercontig_0555560 215 542 - 1018 aaatgtatgaccaggcctaaatacgctctcatgctaacagaggcatgataatgctatgaaagtctggtatcagtatcaactcagactttgcatataatagtctttaaaatctctggatattaccctttacccagtgtatagtgaaccaagtaagtgcccatcagtctttgatgaagggctggaggtgtcatcacagtatatatttgccgtggtgtcatagggtctttccccttggggacccacctacctctttagtgtctttctgatctgagtattagctcaagttcaaggatcatggcattttactgaggcaactgcccttagcctcttgctcacccattctcatcttcttggactatgtttactaacaaatttcctggttgcctgtct-atctagtttatccttggggaagttatgttttactaaccatcttcacaagttcctgtgaatcaaaccctcttggctgtcacactggccttactatttattataataaatgtgaatccctggcttctgccaattaagactcaccacccggcctt i gorGor1.Supercontig_0555560 C 0 C 0 s panTro2.chr12 165884 542 - 135371336 aaatgtatgaccaggcctaaatacgctctcatgctaacggaggcatcataatgctatgaaagtctggtatcagtatcaactcagactttgcatataatagtctttaaaatctctggatattaccctttacccagtgtatagtgaaccaagtaagtgcccatcagtctttgatgaagggctggaggtgtcatcacagtatatatttgccatggtgtcatagggtctttccccttggggacccacctacctctttagtgtctttctgatctgaatattagctcaAGTTCAAGGATCATGGCATTTTACTGAGGCAACTGCCCTTAGCCTCTTGCTCACTCATTCTCATCTTCTTGGACTATGTTTACTAACAAATTTCCTGGTTGCCTGTCT-ATCTAGTTTATCCTTGGGGAAGTTATGTTTTACTAACCATCTTCACAAGTTCCTGTGAATCAAACCCTCTTGGCTGTCACACTGACCTTACTATTTATTATAATAAATGTGAATCCCTGGCTTCTGCCAATTAAGACTCACCACCCGGCCTT i panTro2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_149 2320445 0 + 2342370 I e rheMac2.chr11 176058 1123 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I e canFam2.chr26 3171389 655 + 42029645 I a score=83126.000000 s hg19.chrUn_gl000223 39190 160 + 180455 tcttCCTTCAATTGTGGGATCCTTACAGGTGCATTACTCCAAATACCTTTCAAGAAAATACTTCCCATTCT---CCTGGAGGGATTCATTGCTTTTGGGAGTTAGCACAGTATTTgagactgtgacctttt-----caggcag-ctgcc--agccagtgcgtgagcaccat s panTro2.chr12 166426 153 - 135371336 TCTTCCTTCAACTGTGGGATCCTTACAGGTGCATTACTCCAAATACCTTTCAAGAAAATACTTCCCATTCT---CCTGGAGGGATTCATTGCTTTTGGGAGTTACCACAGTATTTGAGACTGTGACC-------------CAGTCTCCC--AGCCAGTGCGTGAGCAGCAT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0555560 757 160 - 1018 tcttCCTTCAATTGTGGGATCCTTACAGGTGCATTACTCCAAATACCTTTCAAGAAAATACTTCCCATCCT---CCTGAAGGGATTCATTGCTTTTGGGAGTTACCACAGTATTTgagactgtgacctttt-----caggcag-ctccc--agccagtgcatgagcagcat i gorGor1.Supercontig_0555560 C 0 C 0 s ponAbe2.chr12 199227 160 - 136387465 TCTTCCTTCAATTGTGGGATCCTTACAGGTGCAATACTCCAAATACTTTTCAAGAAAATACTTCCCATTCT---CCTGGAGGGATTCAATGCTTTTGGGAGTTACCACAGTATTTGAGACTGTGACCTTTT-----caggcag-ctccc--agccagtgcgtgagcagcat i ponAbe2.chr12 C 0 C 0 s xenTro2.scaffold_1134 66974 167 + 183259 TATTCCCCCTTTTATGTGAGTTTT-CTGGTGT-TCGGTCAAGGTACCTTTTAAGAAAATTTTCCACATTCTGTACATGGGAAGATATTCCCTTTATGTGAATTTTC-TGGTGTTTCCGTAGGTATTCCTTTGCAGAGAAGCAT-TTGCCATATTCCGTACATGGGAACTAT i xenTro2.scaffold_1134 n 0 n 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e rheMac2.chr11 176058 1123 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I e canFam2.chr26 3171389 655 + 42029645 I a score=53601.000000 s hg19.chrUn_gl000223 39350 102 + 180455 gggggataggatggcctggcatcatttctgctcagtgtggaactcctctGTGGTAAATATTTGTGCTTGCATTTTACTTTGAGCTGACAAGAAATATCCCAT s panTro2.chr12 166579 102 - 135371336 GGGGGATAGGATGGCCTGGCATCATTTCTGGTCAATGTGGAACTCCTCTGTGGTAAATATTTGTGCTTGCATTTTACTTTGAGCTGACAAGAAATATCCCAT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0555560 917 101 - 1018 gggggataggatggcctggcatcatttctgctgaatgtggaactcctctgtgg-naatatttgTGCTTGCATTTTACTTTGAGCTGACAAGAAATATCCCAT i gorGor1.Supercontig_0555560 C 0 N 0 s ponAbe2.chr12 199387 102 - 136387465 gggggataggatggcctggcatcatttctgctcaatgtggaactcctctGTGGTAAATATTTGTGCTTGCATTTTACTTTGAGCTGACAAGAACTATCCCAT i ponAbe2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e rheMac2.chr11 176058 1123 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I e canFam2.chr26 3171389 655 + 42029645 I a score=59912.000000 s hg19.chrUn_gl000223 39452 221 + 180455 TCCagagagactctggcaaacgtggcagcccagctgctacatatttcactggcagttacctgggaaaatgtccaaatggagaaaaaca-cctggttggtgtgatgacccaggcacttaaaaggtacggaaGGgggcgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagattgagaccatcctg s ponAbe2.chr12 199489 222 - 136387465 TCCagagagactctggcaaaggtggcagcccagctgctacatatttcactggcagttacctgggaaaatgtccaaatggagaaaaacaccctggttggtgtgatgacgcaggcacttaaaaggtacggaaGGgggcaggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtggacggatcacaaggtcaggagattgagaccatcctg i ponAbe2.chr12 C 0 I 4991 s panTro2.chr12 166681 221 - 135371336 TCCagagagactctggcaaacgtggcagcccagctgctacatatttcactggcagttacctgggaaaatgtccaaatggagaaaaaca-cctggttggtgtgatgacccaggcacttaaaaggtacggaaGGGGGTgggggcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagattaagaccatcctg i panTro2.chr12 C 0 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e rheMac2.chr11 176058 1123 - 134511895 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I e canFam2.chr26 3171389 655 + 42029645 I a score=1032556.000000 s hg19.chrUn_gl000223 39673 2050 + 180455 gctTGTAGTAcaggtgtggggagtt-----agcagacagccctcgcctgtcaagcccttcatggtcagcctttgctgcagaagagcttcatccaaagtcacctccctt-ccaggtcaggctgtattcagtgactgaaagaggtgtgaacatagactagaccatgcttgcctgacacatgagccctgtcaggcaacactcactacagagatccattctaagttgggagcagttttgtaggatctgcattgcagtttaaccttttcttttgcttaatcctacttccttctctttcctttcacagatactgatctacagtgaatacctccaaagtatatctcagagtcaactttcagaaaacccaacAGATTGCAGCTTgtaccattattgaggtgctccaaaatagcaaaggatgggccaaagttttggaactggattactcattatccagctgacatacaaaccccaccactgtggcaggtggagcacaaagaggccccggcataaggaggtggttcaatcattaaatagttcaccaatagtaaattaagaggaagcacctgtgttatgtaacagatgtttgaacttaggagatagattattattaaataacaggtttgggt-gctgatatgttttggctgtgtccccagccaaaccttatcttgagttgtagctcccatcatccccccgtgtcgtgggaggga-cctgggggaaggtaattgtatcatggaggtgggtttttcccatgctgttcttgtggtagtgaataaatctcatgagatctgatggttttat-acgggcagttcctctgtacacgctctcctgcctgtcaccatgtaagacgtgtctttgctcctccttc-------------attgtgaggacttcccagccatgtgaaactgtgagttcattaaacctctttttctttataaattacccagtctgtggta-tttctttatagcagtatgagaacggactaatacagtggctactgctgaaagccactgatgctctacataaagataacaaacagttgaggacaagtaatagacaattgattgcagttgtgaaagttagagggcctttggctgcacaaaaagcagctcacatctgctgtaTCACAAGTGGTTattaggtcctt-gcttgcaggaaaaaaaaactattgcatgaggaaaggccacgtggaagcctcaaactacaatccacccaagatagtaaataagaacaatctctggggggatagtagagattagagacacccttcaggatataaaagatttaggagtgatggttcccatcatatctctagtaaaaactactcataactgcaattcaacttcaagctcaactaagtagtagtcctgatcacagccattaggccagatgtgatatttccactagaagagattaatacagcctcagatacatggtatatggccactgatccagtaaatgca--ttttaatatcccgattcagaaaaaagcataaatgtttgcatTCATATCAAGTGAAATGATGTGGGCAATGAAATGAACAACATACACggccgggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctgtactaaaaatacaaaaaattagctgggcatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgtgccaccacactcccgcctgggcgacagagtgagactctgcctcaaaaaaaaaaaaaaaaagaaaagaaa---------------gaaaAACAATGTACACAAAATGGACAATGATATAACT--AGTTTTGCTCCCAGAGCAATATtaactctctcaacctcagagctgtggttatgggaagcacaaggtccccctagaggatcatctgtgatcttcctgcttccacactgcagtacccaaacccatgtgttctttctctttgaaaacacagcaccGTATAAAGGTCAAACATCAAGGATTAG s panTro2.chr12 166902 2066 - 135371336 gctTGTAGTAcaggtgtggggagttcagttagcagacagccctcgcctgtcaagcccttcatggtcagcctttgctgcagaagagcttcatccaaagtcacctccctt-ccaggtcaggctgtattcagtgactgaaagaggtgtgaacatagactagaccatgcttgcctgatacatgagccctgtcaggcaacactcactacagagatccattctaagttgggagcagttttgtaggatctgcattgcagtttaaccttttcttttgcttaatcctacttccttctctttcctttcacagatactgatctacagtgaatacctccaaagtatatctcagagtcaactttcagaaaacccaacAGATTGCAGCTTGTACCATTATTGAGAtgctccaaaatagcaaaggatgggccaaagttttggaactggattactcattatccagctgacatacaaaccccaccactgtggcaggtggagcacaaagaggccccggcataaggaggtggttcaatcattaaatagttcaccaatagtaaattaagaggaagcacctgtgttatgtaacagatgtttgaacttaggagatagattattattaaataacaggtttgggt-gctgatatgttttggctgtgtccccagccaaaccttatcttgagttgtagctcccatcatccccccgtgtcgtgggagggatccggggggaaggtaattgtatcatggaggtgggtttttcccatgctgttcttgtggtagtgaataaatctcatgagatctgatggttttat-aagggcagttcctctgtacacgctctcctgcctgtcaccatgtaagacgtgtctttgctcctccttc-------------attgtgaggacttcccagccatgtgaaactttgagttcattaaacctctttttctttataaattacccagtctgtggta-tttctttatagcagtatgagaatggactaatacagtggctactgctgaaagccactgatgctctacataaagataacaaacagttaaggacaagtaatagacaattgattgcagttgtgaaag----agggcctttggctgcacaaaaagcagctcacatctgctgtaTCACAAGTGGT-ATTAGGTCCTT-GCTTGCAGGAAAAAAAAACTATTGCATGAggaaaggccacgtggaagcctcaaactacaatccacccaagatagtaaataagaacaatctctggggggatagtagagattagagtcacccttcaggatataaaagatttaggagtgatggttcccatcatatctctaGTAAAAACTACTCATAACTGCAGTTCAACTTcaagctcaactaagtagtagtcctgatcacagccattaggccagatgtgatatttccactagaagagattaatacagcctcagatacatggtatatggccactgatccagtaaatgca--ttttaatatcccgattcagaaaaaagcataaatgtttgcattcaTATCAAGTGAAATGATGTGGGCAATGAAATGAACAACATACACggctgggcacagtggctcatgcctgtaatcccagaactttgggaggctgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcatggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggcggagcttgcagtgagccgagatcgtgccaccacactccagcctgggcgacagagtgagactctgcctcaaaaaaaaaaaaaaaaagaaaagaaaagaaaagaaaagaaagaaaaACAATGTACACAAAATGGACAATGATATAACT--AGTTTTGCTCCCAGCGCAATATTAACTCTCTCAACCTCAGAGCTGTGGTTATGGGAAGCACAAGGTCCCCCTAGAGGATCATCTGTGATCTTCCTGCTTCCACACTGCAGTACCCAAACCCATGTGTTCTTTCTCTTTGAAAACACAGCACCGTATAAAGGTCAAACATCAAGGATTAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 204702 2039 - 136387465 gcttgtagtacaagtgtggggagttcagttagcagacagccctcacctgtcaagcccttcatggtcagcctttgcagcagaagagcttcatccaaagtcacctcccttcccaggtcaggctgtattcagtgactgaaagaggtgtgaacatagactagaccatgcttgcctgacacatgagccctgtcaggcaacactcactacagagatccgttctgagttgggagcagttttgtaggatctgcattgcaatttaaccttttcttttgcttaatcctacttccttctctttcctttcacagatactgatctacagtgaatacctccaaaatatatctcagagtcgactttcagaaaacccaacAGATTGCAGCTTGTACTATTATTGAGgtgctccaaaatagcaaaggatgggccaaagttttggaactggattactcattatccagctgacatacaaaccccaccactgtggcaggtggagcacaaagaggccccggcataaggaggtggttcaaccattaaatagttcaccaatagtaaattaagaGGCAGCACCTGTGTTATGTAACAGATGTTTGAACTTAGGAGCTAGATTATTATGAAATAACAGGTTTCTGTGGCtgatatgttttggctgtgtccccacccaaacctcatcttgagttgtagctcccatcatccccccatgtcgtgggaagga-cccgggggaaggtaattgtatcatggaggtgggtttttcccatgctgttcttgtggtagcgaataaatctcatgaggtctgatggttttataaagggcagttcttctgtaaacgctgtcctgcctgtcaccatgtaagacgtgtctttgctcctccttc-------------attgtgaggacttcctagccatgtgaaactgtgagttcattaaacctctttttctttataaattacccagtctgtggtattttttttataccagtatgagaatggactactacaGTGGCTACTGCTAAAAGCCACTGATACTCTACAGAAAGATAACAAGCAATTGAGGACAAGTAATAGACAATTGATTACAGCTGTGAAAGTTAGCGGGCCTTTGGCTGCACAAAAAGCAGCTCACATCCACTGTATCACAAGTGGT-attaggtccttggcttgcagg-aaaaaaaactattgcgtgaggaaaggccacgtggaagcctcaaactacaatccacccaagatagtaaataagaacaatctctggggggatagtagagattagagtcacccttcaggatataaaagatttaggagtgatggttcccatcgtatctctaGTAAAAACTACTCATAACTGCAGTTCAACTTC-AGTtcaactaagtattagtcctgatcacagccattaggccagatgtgatattttcactagaagagattaatacagcctcagatacatggtatatgaccactgatccagtaaatgca--ttttaatatcccgattcagaaaaaagcataaatgtttgcattcaTATCAAGTGAAATGATGTGGGCAATGAAGTGAACAACATACACggctgggcgcagtggctcattcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacgtggtaaaaccccatctctactaaaaatacaaaaaattagctggggatggtggcgggtgcctgtagtcccagctaatcaggaggctgaggcaggagaatggcgtgaacctgggaagcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagtgagactctgcctcaaaaaaaaaa-------------------------------aaaaaaCAATGTACACGAAATGGACAATGATATAACTACAGTTTTGCTCCCAGGGCAATATTAACTCTCTCAACCTCAGAGCTGTGGTTACGGGAAGCACAAGGTCCCCCCAGAGGATCATCTGTGATCTTCCTGCTTCCACACTGTGGTACCAAAACCCATGTG----TTCTCTTTGAAAACACAGCACCGTATAAAAGTCAAACATCAAGGATTAG i ponAbe2.chr12 I 4991 C 0 s rheMac2.chr11 177181 2061 - 134511895 gcttgtagtacaagtgtgggaagttcagttagcagacagccctcacctgtcaagcccttcgtggtcagcctttgctgcagaagagctttgtccaaagtcacccccttc-ccaggtcaggctgtattcagtgactgaaagaggtatgaacacagactagaccatgcttgcctggcacctgaaccctgtcaggcaacactcaccacagagatccattctgagttgggagcagttttgtaggatctgcattgcagtttaaccttttcttttgcttaatcctacttctttctctttcctttcacagatactgatctacagtgaatacctccaaagtatatctcagagtcgactttcagaaaacccaaTGGATTGCAGCTTGTACCATTATTGAGGCGCTCCAAAATAGCAAAGCATGGGCCAAAGttttggaactggattactcattatccagcttacatacgaaccccaccactgtggcaggtggagcacaaagaggccctggcataaggaggtggttcaatcattaaatagttcaccaatagtaaattaagaGGCAGCACCTGTGTTATGTAACAGATGTTTGAACTTAGGAGATAGATTATTATTAAATAACAGATTTGAGTGGCtgatatggtttggcagtgtccccacccaaacctcatcttgagttgtagcccccatcatctccttgtgtcacgggaggga-ccc-agggaaggtaattgaatcatgcagatgggtttttcccatgctgttcttgtgatagtgaataaatctcatgaggtctgatggttttataaagggcagttcctctgtacacgctctccttcctgtcaccatgtaagatgtgtctttgctcctccttcaccttctgtcatgattgtcaggccttcccagtcatgtgaaactgtgagttcattaaacctctttttctttataaattacccaatctggggta-tttctttatagcagtatgagaatggactaatacaGTGGCTACTGCTAAAAGCCACTGATGCTCTACATAAAGGTAACAAACAGTTGAGGCCAAATAATAGACAATTGATTGCAGCTGTGAAAGTTAGAGGGCATTTGGCTGCACAAAAAGCAGCTCACACCTGCTGTATCACAAGTGGc-attaggtccttggcttgcagg-aaaaaaaactattgtggcaggaaaggccacgtggaagcctcaaactacaatccacccaagatagtaaataagaacaatctctgggggagtagtagagattagagtcacatttcaggatataaaagatttaggagtgatggttcccatcCTCTCTCTAGTAAAAACTACTCACAACTGCAATTCAACTTcaagctcaagggagtagtagtcctgattacagccattaggccagatgtgatatttccactagaagagattaatacagcctcagatacatggtatatggctactgatccagtaaatgcattttttaatatcctgattcagaaaaaaggataaatgtttgcattcaTATCAAGTGAAATGAAGTGGGCAATGAAATGAACAATATACAAggctgggcgcggtggctcaggcctgtaatcc--gcactttaggaggttgaggtgggtggatcatgaagtcaggagatcgagcccattctggctaacgcggtgaaaccccgtctctattaaaaatacaaaaaattagctaggcgtggtggtgggcacctgtagtcccagttactcgggaggcggaggcaggagaatggcatgaacccgggaggtggagcttgcagtgagctgagatcgggccactgcactccaggctgggtgacagagcaagactccatctcaaaacaaaaacaaaaacaaaa--------------------aCCAAACAATATACATGAAATGGACAATGGTATAACTACAGTTTTGCTCCCAGGGCAATATTAACTCTCTCAACCCCAGAGTTGTGGTTATGGGAAGCACAAGGTCCCCCCAGAGGATCATCTGTAATCTTCCTGCTTCCACACTGTGGTCCCCAAACCCATGTG----TCCTCTTTGAAAACACAGCACTGTATAAAGGTCAAACATGAAGGAttag i rheMac2.chr11 I 1123 C 0 e micMur1.scaffold_51584 991 227 - 5263 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e cavPor3.scaffold_248 198050 9620 + 667635 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I e canFam2.chr26 3171389 655 + 42029645 I a score=38858.000000 s hg19.chrUn_gl000223 41723 50 + 180455 ccccagagggggcac--tttccacctgaggacag----agtgttcta---aattataaa s rheMac2.chr11 179242 54 - 134511895 tcccaaagggggcac--tttccaccagaggacagagtgagtgttcta---aattacaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 206741 41 - 136387465 CCCCCAAGGGGGCAC--TTTCCACCAGAGGACAG------TGTTC----------TAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 168968 48 - 135371336 CCCCAGAGGGGGCAC--TTTCCACCAGAGGACAG------TGTTCTA---AATTATAAA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 43855 56 - 48060 ccccaaatggggcattatttttaccagaggacagagcaagtgttctg---aattaaaaa i otoGar1.scaffold_81811.1-48060 N 0 C 0 s micMur1.scaffold_51584 1218 48 - 5263 --------agggcacacttttcaccagaggacagagcaagtattctg---aattataag i micMur1.scaffold_51584 I 227 C 0 s cavPor3.scaffold_248 207670 12 + 667635 --------------------------------------------CTA---AAGTATAAG i cavPor3.scaffold_248 I 9620 C 0 s speTri1.scaffold_137548 49859 40 + 100761 ----------------CTTTTCACCACAGGTCAGAGCATGTGTTCCA---AGCCATCAA i speTri1.scaffold_137548 N 0 C 0 s canFam2.chr26 3172044 59 + 42029645 CCCCGAAGGGAACACACTTTTCACCCAGAGATAGAGCAAATTTTCTGCTTAATTGCAAG i canFam2.chr26 I 655 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I a score=355605.000000 s hg19.chrUn_gl000223 41773 291 + 180455 ctacagatacagcatg-gaactttgtaccct--tgtgtccaaggaccagcatgc--cagaa---aag----ccac--tctttg--ctgggg-cattgacactgatcatcagcag------gtatggctgctgttacacaacagggcaggagaaaaaaggagtggaactcaggtggccctcctaggtgcctctttgaacttcc--ttgccccattgtgat-gtaagtggacaaatacagcaacttggatctgaaaaggacatggtggccagggctctgacc---ccctcaggaataagggtctgggacaagctaccacata s rheMac2.chr11 179296 288 - 134511895 ctacagataca-catg-gaactttgtaccct--tgtgtccagggaccagcatgc--cagaa---aag----ccac--tctttg--ctgggg-cattgacactgatcatcagaag------gtatggctgc--ttacacaacagggCAGGAGAAAAAAGGAGTGGCACTCAGGTGGTCCACCTAGGTGCCTCTTTGAACTTCC--TTGCCCTATTGTGAT-ATAAATGGACAAATACAGCAACTTGGATCTGAAAAGGACATGGTGAACAGGGCTCTGACC---CCCTCAGGAATAAGGGTCTGGGACAAGCTACCACGAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 206782 290 - 136387465 CTACAGATACAGCATA-GAACTTTGTACCCT--TGTGTCCAAGGACCAGCATGC--CAGAA---AAG----CCAC--TCTTTT--CTGGGG-CATTGACACTGATCATCAGCAG------GTATGGCTGCTGTTACACAACAGGGCAGGAGAAAAAAGGAGTGAAACTCAGGTGGCCCACCTAGGTGCCTCTTTGAACTTCC--TTGCCCCATTGTGAT-GTAAGTGGACAAATACAGCAACTTGGATCTGAAAAGGACA-GGTGCCCAGGGCTCTGACC---CCCTCAGGAATAAGGGTCTGGGACAAGCTACCACATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 169016 291 - 135371336 CTACAGATACAGCATG-GAACTTTGTACCCT--TGTGTCCAAGGACCAGCATGC--CAGAA---AAG----CCAC--TCTTTG--CTGGGG-CATTGACACTGATCATCAGCAG------GTATGGCTGCTGTTACACAACAGGGCAGGAGAAAAAAGGAGTGGAACTCAGGTGGCCCTCCTAGGTGCCTCTTTGAACTTCC--TTGCCCCATTGTGAT-GTAAGTGGACAAATACAGCAACTTGGATCTGAAAAGGACATGGTGGCCAGGGCTCTGACC---CCCTCAGGAATAAGGGTCTGGGACAAGCTACCACATA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 43911 288 - 48060 cta--------------aatctttgtgctgccttgtgtccagggaccagtaagt--cagaa---gaa----cggctgtctctg--cagggg-attcgacactgatcttcaggaat-ggaaatcatgctgctgttacactatagggtagaaaaggttaggagaggaactcaggtgatccacctaggtgc--ctcaggacttgc--ttgctaaaatgtgat-gtaaatggacagatacagttacttgggtctgagaagggcatggtgaccagggctcagaaagatccctaaggaatgaaagtctgggacaccttacaagata i otoGar1.scaffold_81811.1-48060 C 0 C 0 s micMur1.scaffold_51584 1266 301 - 5263 ctacagatacaacatgggaactttgtgctgc--tgtgtccagggaccagtagac--cagaagaggag----ttgctgttttta--caggggtatttgccactaatcatcaaaagt-ggaacttgtgctgctgttagatgacagggcaggaagaagtatgagtggaactcaggtgattcacctaggtgcctctcagaacttcc--ttgccaaaacgtgac-ataaatggacaggtaaagcaacttgggtctgaaaagcgcatgctgac--aggctcagaca---ccctcaggaatggggatctggaacatactaccagata i micMur1.scaffold_51584 C 0 C 0 s cavPor3.scaffold_248 207682 256 + 667635 CTACAA------CATGGAAACTCTGTGCCCCTGTGTGG----AGACCAGCATAC--CAGAA---AAAGACTTGG-----TCTT--CTGGGGTATTTGACATGGATCCTTAGGAG------GTAGAGCTGTTGATA---AACAGAGCAGG----AACAGAGGAGGAACTCAGTTGGTCT-CCTGG-------TTTATACTTCC--GTGTAAAAATGTGATAGAAAATGGGCAGACATAGCAACTTGGGTGTGAGAAGGAATTGATGACGGGAGCGCAAACC---CTCT-TGGGACACCACTCC---------------ATC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 49899 275 + 100761 CCACAGATGCCCTGTGGGAAGTCTGTGCTCCC-TGTGGCCA-GGACCAGCAAGC--CAGGA---GAG----TGGG--GTTCTG--CAGGGCTGCTTGGCACTGACCTCCAAGAG------GTTCAGCTGCCATCACACAACAGAGCAGAC---CACAGGAGGGGAACTCAG--GACCC-TCTAGGCACCTCTTGGAGCTTCC--AGGCCAAACTACTACAGTAAATGGCCAGAGACAGCAGCTCAAATCAGGGAAGGGCATGGTGATGAGGGCTGAGACC---CTGT-GGGGATGAGGTCCTGGG------------ACA i speTri1.scaffold_137548 C 0 C 0 s canFam2.chr26 3172103 253 + 42029645 CTACCAGTCCAATGT--GGGCATCACGCTCTT-TGTGTCCAGGAGCCAGCAGGTCCCAGAAGTGGGG----TCAC--TCTTTTCCCAGGGGTTCTTGATGT--ATCACAAGGAGGAGGATGTAGGGCTAT--TTACACAACAGTGTGAG--GAGGAATTAGTGG-ATTCAGATGATCCACCTATATGTTTCTTGCATTTACCATCTGCTCAGGTCTGAG----------------------------------GAGGGCCTGGTAACCATGGCTCAGAC----CCCTGAAGAGGGAG----------GAGCCACCAA--- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 66995 274 - 81011 CTCCAGATACGCCGT--GGGCATTGTGCTCCT-TGTGTCCAGGGACCAGCAGGG--CAGACGAGGAG----TCGC--TCTTTT-TCAGGGGTACTTGATGC--AC------GAGGAGGATGCAGTGCTGC--TTACACAACAGGGTGGG--GAGGAAGGAATGG-ATTCAGGTGATCCACTTAGGGGCTTCTTGCAACTTTC--TTACCCAGTTGTGAAGGTACATGCACAGATACAGCAACTTGG-TCT---GAGGGCACGGGAACCATGGCTCAGAC----CCCTCAGCAAGGAGG--------TGAGCCATCAA--- i felCat3.scaffold_141210 N 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e bosTau4.chr17 29945444 4210 - 76506943 I e equCab2.chr8 64127489 1792 - 94057673 I a score=196435.000000 s hg19.chrUn_gl000223 42064 298 + 180455 agccacttatgtccacagaggtgctaacagggtgtgatgagaatctacagtgactaatacag-----aaagcaac-tgcaaca------------------------------------------ttaggggctgtggtttgtcctatgaatcttccttttcttagtgtctcttcagagagagcccca---ccagaatcctagagcagcagcttcccaaatgtaacatagacaaggggatct-aagtggtgggaaggatggacTGTGTGATCAGAAACATGCATTATGActcagatctctcttcaaggagggacttac--ccagg--gcag-ggagagtcatcagcagagaacct s rheMac2.chr11 179584 294 - 134511895 AGTCACTTATGTCCACAGAGGTGCTAACAG--TGTGATGAGAATCTACAGCGAATAATACAG-----ACAGCAAC-TGCAACA------------------------------------------TTAGGGGCTGTGGTTTGTCCTACAAATATTCCTTCTCTTAGTCTCTCCTCAGAG--AGCCCCA---CCAGAATCCTAGAGCAGCAGCTTCCCAAATGTAACACAGACAAGGGGATCT-AAGCGGTGGGAAGGATGGACTGTGTGATCACAAACATGCATCATGACTCAGATCTCTCCTCAAGGTGGGACTTGC--CCAGG--GCAG-GGAGAGTCATCAGCAGAGAGCCT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 207072 298 - 136387465 AGCCACTTATGTCCACAGAGGTGCTAACGGAATGTGATGAGAATCTACAGTGAACAATACAG-----AAAGCAAC-TGCAACA------------------------------------------TTAGGGGCTGTGGTTTGTCCTACGAATCTTCCTTTTCTTAGTCTCTCTTCAGAGAGAGCCCCA---CCAGAATCCTAGAGCAGCAGCTTCCCAAATGTAACATAGACAAGGGGATCT-AAGTGGTGGGAAGGACAGACTGTGTGATCACAAACATGCATTATGActcagatctctcctcaaggagggacttgc--ccagg--gcag-ggagagtcatcagcagagaacct i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 169307 298 - 135371336 AGCCACTTATGTCCACAGAGGTGCTAACAGGGTGTGATGAGAATCTACAGTGAATAATACAG-----AAAGCAAC-TGCAACA------------------------------------------TTAGGGGCTGTGGTTTGTCCTATGAATCTTCCTTTTCTTAGTGTCTCTTCAGAGACAGCCCCA---CCAGAATCCTAGAGCAGCAGCTTCCCAAATGTAACATAGACAAGGGGATCT-AAGTGGTGGGAAGGATGGACTGTGTGATCAGAAACATGCATTATGACTCAGATCTCTCCTCAAGGAGGGACTTAC--CCAGG--GCAG-GGAGAGTCATCAGCAGAGAAACT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 44199 283 - 48060 tgccactgatgccagcagaggtggcaacaaagtg---caagcattg--agtgggtaacaaaggagaaaaAGCAACTTTTGACA------------------------------------------GTA-GGCCCATGATTTGTCCTACTATTCTTCTTTTTCTTAGTCTCTTCTCAGACAGAGCCTCCTCACCAGTGTCCTAGAGCAACAGCTCCCCAGATGTAATGCAGAAAAAGAACCT--AAGC-GTGCAAGGgatggactgtgta----------------atcacccagatccctcctcaaagagagatctgctgcctggttgaag-ggagcgctgttagc----gctct i otoGar1.scaffold_81811.1-48060 C 0 C 0 s micMur1.scaffold_51584 1567 292 - 5263 agccactgatgccagcagagggggtaat--agta---caagaaatgacagtgggtaatggagaagagaaaGCAAC-TCCAACA------------------------------------------GTAGGGCCCATGGTTTGTCCTACTAATCTTCCTTTTCTTAGTCTTTCCTCAGAAAGAGCTCCC---CCAGAGTCCTACAGCAATAGCTTCCCACATGTCATATAGAAAAGGGGATTTAAAGCAGTAGAAGGGATGGATTATGTAGTCACACAgatgc---atcacccagagccctcctcaaagagagacctgctgcccggtggcag-agagagccattag--------ct i micMur1.scaffold_51584 C 0 C 0 s cavPor3.scaffold_248 207938 280 + 667635 AGCCAGGGGTGCCAGCAGAGGTGCTGATTAAGTG---TGAGAAT--TCAGATGATA-----------ACAGGAGA-AACAGCACAACTCCAGTGGAAAAGTGAAGGAAAAGCGGGGAGAAGTGAGGGTGAAGCTATAGCTCAAACGACTCA--TTTCTTTG----GTCTCTG------------CTCA---CTAAAA----AAGGCATCAGCAGCTTTTGAATAATTAAGAAAAGG---TGT-G---------------------TGTAATACCAGAGATGC---GGCATCCAAGTCCTTCCTCAGGGAATCCTTTGCTGCCCAGTGGCAG-AGGGAGCTGTCAGCAGTCT---- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 50174 246 + 100761 TGCCAGAGGCCGTAATAAAGGGGCTA--------------------CCAG-----------------GCAGCAAA-CACAGCC------------------------------------------GGAGGAGCTGTGGCTGGTCCTACTCACCTTCCTCTGT---GTCCCAG---------AGCCCCA---CTGAAACCCTAGAGCAGCAACTTCCAGAGGTAACTTAAGACAGTG---TCT-AAGCAG-GGGAAGGGCAAAC--TGCAGTCCC--AGATGC---ATCGTCCAGATCC-TCCTCAAGGAAGAACATGCTGTCCATTGGCAG-AGGGAGCAGTCAGCAGACAACCT i speTri1.scaffold_137548 C 0 I 59 s equCab2.chr8 64129281 225 - 94057673 aGCCATGGATGCCAGCAGAGGGGGTAACTG--TGTGAGGAAAACCTGGAATGGATATTAGGTGAGGGAAAACAAG-TCCAACA------------------------------------------GTAGGGGC----------------------TGT------AGTCTGTCCTCAGAG--AGACCTA---ATA--------------------------------TTGGGAAAATGAATCT-AAACAGTGGAAGGGATGGACTGTGTAGTCTCCATGTGTC-----ACCCAGG--CCCTCTTCAAGGACACACTTt----------gcag-ggagag-ggtcagcagaccgcct i equCab2.chr8 I 1792 C 0 s felCat3.scaffold_141210 67269 240 - 81011 ---------TGCCAGCAGAGGTGGCA------------GAGGCCCCAGAATAGCTCACAGGTGAGAGAAAACGAC-AGCATCA------------------------------------------GGAGGGACCA--GTTGGTCCCAGCGAACTTTGTTTCCTCAGTCTCTCCTCGGAC--AGACCTA---ACG--------------------------------CTGGGAAAATGGAACT-CAGCAGAG-GTGGGATGGACTGTGGGCACAGAGTGAGgc-----cacccaa--ccctctccagggaaggacttgttgctca---gcagcagggagtggtcagctgactgccc i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3172356 205 + 42029645 ---------TGCCA---------GCA------------AAGGCCACAGAATGGCTCACAGGTGAGA-------------------------------------------------------------AGGGACCA--GCTGGTCTGAGCAACC--TGTTTCCTCAGTCTCTCCTCAGAC--AGACCTA---ATG--------------------------------CTGGGGAAATGGGGCT-CAGCAGTGAAAGGGATGGACTGTGGTGACAGA--TGGGC-----AATCCAA--CCCCCTCCAAGGAAGGGCTTCCTG-------gcag-ggagagtggccagcagactgcct i canFam2.chr26 C 0 C 0 e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e bosTau4.chr17 29945444 4210 - 76506943 I a score=-25252.000000 s hg19.chrUn_gl000223 42362 61 + 180455 ccac----------ttttgaagctggcctcagctgaaatgagctgc-----ttcacctaagaaatcagcagcatca s micMur1.scaffold_51584 1859 34 - 5263 ctag----------atgacagcttattccaagttgtcctcagct-------------------------------- i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 44482 34 - 48060 cctg----------ctgtaggtttgttcaacattgtcttcagct-------------------------------- i otoGar1.scaffold_81811.1-48060 C 0 C 0 s panTro2.chr12 169605 61 - 135371336 CCAC----------TTTTGAAGCTGGcctcagctgaaatgagctgc-----ttcacctaagaaatcagcagcatca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 207370 61 - 136387465 ccac----------ttgtgaagctggcctcagctgaaatgagctgc-----ttcacctaagaaatcagcagcatca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 179878 61 - 134511895 CCAC----------TTGTGAAGCTGGCCTCAGCTgaaatgagctgc-----ttcacctaagaaaagagcaacatca i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 208218 37 + 667635 --------------------------CAACGGCTG------GCTGTCCCAGTTTACCAACGATGTTAAC------- i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64129506 23 - 94057673 ccag-tgtcagccttt------------ccagctga---------------------------------------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 67509 37 - 81011 ccagttgccggagtttgtggagttggtctcagctaaa--------------------------------------- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3172561 36 + 42029645 ccagctgccggcttctgtgaagttggcctca-ctaaa--------------------------------------- i canFam2.chr26 C 0 C 0 e speTri1.scaffold_137548 50420 59 + 100761 I e tupBel1.scaffold_132008.1-22537 14154 764 + 22537 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e bosTau4.chr17 29945444 4210 - 76506943 I a score=51563.000000 s hg19.chrUn_gl000223 42423 68 + 180455 ctgaagaaaagagctgcttcacctaaggc---tgcttccttcccagggc----agcctgagtctgggtgatgggg s rheMac2.chr11 179939 68 - 134511895 cctaagaaaagagctgcttcacctaaggt---tgcttccttcccagggc----agcctgagtctgggtgatgggg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 207431 68 - 136387465 ctgaagaaaagagctgcttcacctaaggt---tgcttccttcccagggc----agcctgagtctgggtgatgggg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 169666 68 - 135371336 ctgaagaaaagagctgcttcacctaaggc---tgcttccttcccaaggc----agcctgagtctgggtgatgggg i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 44516 58 - 48060 -----aaaaacagcagcttatcctgagcc---tgttcccttaactgcgc----agcctgactctgg-tgac---- i otoGar1.scaffold_81811.1-48060 C 0 I 1091 s micMur1.scaffold_51584 1893 57 - 5263 -----gaaaacagctgcttaaccagaggctattattcccttaacaagtc----tgcctgactttgg--------- i micMur1.scaffold_51584 C 0 C 0 s tupBel1.scaffold_132008.1-22537 14918 60 + 22537 CTAGCGAAGAGAGGTGTCTGCCCTGCTAC---AATTCCCT---CAGGGC----AGCTTGCGTCTTGGCTG----- i tupBel1.scaffold_132008.1-22537 I 764 C 0 s cavPor3.scaffold_248 208255 23 + 667635 ------------------------------------TCACTCCCAAGGC----AGCCCGCATC------------ i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64129529 59 - 94057673 ---------agagctgctgcacctgcgct---cactcccctcccaaggctgctcgcccgcctctgt-tgacg--- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 67546 56 - 81011 --------gagagcagattcacttgggat---gctccccttcccagggc----aacagtcccctgg-tgacg--- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3172597 55 + 42029645 ---------agaactgcttgacctgggat---gatcctcttcatagggc----agcaggtctctag-tgaca--- i canFam2.chr26 C 0 C 0 e speTri1.scaffold_137548 50420 59 + 100761 I e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e bosTau4.chr17 29945444 4210 - 76506943 I a score=341720.000000 s hg19.chrUn_gl000223 42491 192 + 180455 tga---gcaatgcagggttgtaagggcctggccgtcttggttcaacacgaggcactccaatgggcagtacatgttccagagttcc-ctgctg----------gctccaa------tgcagtgcaaattgacttcttcctcagctcaatgttttctttcttcttcttcaatcatttcacagctgttgatcctcagtagacatcttgc-acccaa- s canFam2.chr26 3172652 202 + 42029645 -ga---gcacctcagagctgtggagatctgatcatattggcccaatacgagatactcc--tgagcagcacatgctt--gagctcc-ctactggtgtggccagggtctcaacagtct-ctgtgcagcctgacttcttcctctgatctgccctttgctatttatcctgccatcacatcacagctgttgatcctcaataaacatcttgc-attcca- i canFam2.chr26 C 0 I 4 s felCat3.scaffold_141210 67602 204 - 81011 -ga---gctcctcggggatgcggagacctgaccatcttggccccacaggagacactca--cgagcagcacttccttcagagcttc-ctactggtgtggccagggtctcaccagcct-cagtccagcctgatttcttcctccgacccaccctttcctattcaccttcccatcaccccacagatgctgatcctcaataaacaccttgc-actcca- i felCat3.scaffold_141210 C 0 I 4 s equCab2.chr8 64129588 205 - 94057673 -ga---gcaactcacggctgtggaggcctgaccggctaggcccaacaggagacgctcc-acgagcaatccttgctgcagagctcc-tcac-ggtgtggctaaggtctcaacaacccacaatggagtctgacttcttcctctgagcaaccctttcctaatttttctcccatcacatcacagccactgatcctcaataaacctcctgc-acccca- i equCab2.chr8 C 0 I 4 s rheMac2.chr11 180007 189 - 134511895 tga---gcaacacagggttataaaggcctggccatcttggttcaacacgaggcactccaatgggcagtacatgttccagagttcc-ctgctc----------gctccaa------tgcagtgcaatttgaattcttcctcagctcaatgttttctta---cttcttcgatcatttcacagctgttgatccTCAATAGACATCTTCC-ACCCAA- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 207499 192 - 136387465 tga---gcaatgcagggttgtaagggcctggccgtcttggttcaacacgaggcactccaatgggcagtacatgttccagagttcc-ttgctg----------gctccaa------tgcaatgcaaattgacttcttcctcagctcaatgttttcttacttcttcttcgatcatttcacagctgttgatcctcaatagtcatcttgc-acccaa- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 169734 192 - 135371336 tga---gcaatgcagggttgtaagggcctggccgtcttggttcaacacgaggcactccaatgggcagtacatgttccagagttcc-ctgctg----------gctccaa------tgcagtgcaaattgacttcttcctcagctcaatgttttctttcttcttcttcgatcatttcacagctgttgatcctcaacagacatcttgc-acccca- i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 1950 183 - 5263 tgactcaaaatgaagggttataaaggcctgaccattgtgacctgatatgaaaca--ctgatgagcaatacactgtccagagctcc-ctg-------------GCTTCCA------AGCAGTATAATTTGGCTA----TTCTGCTTGATTTTTTTCTATTTA---TTCTATAATTTCTTAGTTGTTGctcctcaataaacattgtgc-acccaa- i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_101698.1-26550 12 183 + 26550 tga---gcaattcagtgttataaaggcctgaccatcctgacccaatatgaaacactctgataagcaatacac--tccagagctct-ctg-------------gttccca------agcagtgctgtttgactt----ttctgctcctttcattcctatttactttcctgtcatttcatagatgttggtcctcaataaacatttttc-atgcca- i otoGar1.scaffold_101698.1-26550 n 1091 C 0 s tupBel1.scaffold_132008.1-22537 14978 182 + 22537 -------------AGGGTTTTAAAGGAGTGGCAGTTTGGGCCCAGTA-GAGACA--CTAACGAACAATACCCGCTCCTGAACTC--CTGTGG----------GCTTGGGATGACTTGGAGAGCAGTTTGACTTCTTCCTCAGCTCAATTTTTTCCTATTTATTCTCCCATCACTTTACACTTGTTGATTCTCAA---ATATCTTGCAACCCAA- i tupBel1.scaffold_132008.1-22537 C 0 C 0 s choHof1.scaffold_224036 2636 156 + 3923 ---------------------AAAGGCTTGACCATCTGG--CCTGTAAAAGACACTTTGATGAGCAATAC-TGCTCCAGAGctcc-----------------gttccag----------------cttggcttcatcctctgctcactcctttcccatttagtctcccaacatttcacaggtgtagagccacaacaaacatcctgc-acgccaa i choHof1.scaffold_224036 N 0 C 0 s speTri1.scaffold_137548 50479 167 + 100761 ------------------------GGCCTGGCCATCATGGCCCACCA--AGACATTCCAGCGAACATTATCTGCTCT-GGGCGCCATTG-------------GCTTGGGACAACCGAAAGTCCAGTTTGTCATTTTCCTCTATTTAATCCTTTCTTA----TTCTCCCACAATTCGGCAGCTGCTAA-CCTCAGGAAACACCTTGT-ACCCCA- i speTri1.scaffold_137548 I 59 C 0 s cavPor3.scaffold_248 208278 142 + 667635 ---------------------------CTGGCTGACAAGG----------GATAGTCTCATGAGCA--ATTTGCTCCAGAGCTCCTCTG-------------GCTTGGAATAGCCT--AGTGCGATCTCAC---TTCTTCTACTTAATTCTTTCCTA----TTCATTTGTACTT-----GTTGCT----TTCAATACATACCTAGC-ACTCTG- i cavPor3.scaffold_248 C 0 C 0 e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 89013 1070 - 3408981 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I e bosTau4.chr17 29945444 4210 - 76506943 I a score=50275.000000 s hg19.chrUn_gl000223 42683 20 + 180455 a----cttctcagtaaccacttcc s tupBel1.scaffold_132008.1-22537 15160 20 + 22537 A----CTCCTCAGTATCTGCTTCT i tupBel1.scaffold_132008.1-22537 C 0 C 0 s otoGar1.scaffold_101698.1-26550 195 24 + 26550 aactcctttttagtatctgcttcc i otoGar1.scaffold_101698.1-26550 C 0 C 0 s micMur1.scaffold_51584 2133 24 - 5263 aactccttttcagtatctgcttcc i micMur1.scaffold_51584 C 0 C 0 s panTro2.chr12 169926 20 - 135371336 a----cttctcagtaaccacttcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 207691 20 - 136387465 a----cttctcagtaaccacttcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 180196 20 - 134511895 A----CTTCTCAGTAACCACATCC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 208420 7 + 667635 A-----------------GAAACC i cavPor3.scaffold_248 C 0 I 2 s speTri1.scaffold_137548 50646 21 + 100761 AA---CTTCTCAGTGCCTGCCTCC i speTri1.scaffold_137548 C 0 I 2 s bosTau4.chr17 29949654 20 - 76506943 ----ACACCTCAGTATCTGCTTCC i bosTau4.chr17 I 4210 C 0 s canFam2.chr26 3172858 20 + 42029645 ----tcatctcagcatccacttcc i canFam2.chr26 I 4 C 0 s felCat3.scaffold_141210 67810 20 - 81011 ----gcatctcgggatccacttcc i felCat3.scaffold_141210 I 4 C 0 s equCab2.chr8 64129797 20 - 94057673 ----tcatctcagtatctgcttcc i equCab2.chr8 I 4 C 0 s choHof1.scaffold_224036 2792 21 + 3923 ---actacatcagcatctgcttcc i choHof1.scaffold_224036 C 0 C 0 s loxAfr3.scaffold_113 90083 8 - 3408981 ----------------CTACTTCC i loxAfr3.scaffold_113 I 1070 C 0 e oryCun2.chrUn0106 644733 8988 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I a score=437311.000000 s hg19.chrUn_gl000223 42703 124 + 180455 agagaa--caagttacgacaTAGCCTGATTTC----CT-CTGTT----AGAAA-----TA---TTTGGGTT----GTAACAAACACAACTTGAGCC-AGATGAAGCAAACATGAGAATTTATTA---G--GATATTTGG-AGTATCTCACAG--AA s choHof1.scaffold_224036 2813 141 + 3923 agagaacccacctggtgacaGTTCCTGCCTTTATTATT-TTAATTGTAAATAACTAAGTA---ttttagtt----gtaacaaacacagcttggaac-agttgaagcaaaaaatggaatttattagaag--gatatctggtggcacctcacag---- i choHof1.scaffold_224036 C 0 C 0 s loxAfr3.scaffold_113 90091 125 - 3408981 AGTGAACCCAACCTGTCACTGTGTCTCACTTT----CT-Ctattggttaggaa-----ta---ttttgttt----gtaaggaacaca-----aaca-agctgaagcaaaaatgggaatttatt---gg--GACATTTGG-GGTATCTCACAG--AA i loxAfr3.scaffold_113 C 0 C 0 s equCab2.chr8 64129817 133 - 94057673 agagaacccaatttacgacaCAGCCTGACTTG----CT-CTGTTAGTGAGAGA-----TA----GCAGGTTGTAAGTAACAAACACAACTTGAACC-AGACGGAGCAAACATGGAACTTTATT---AG--GATATGTGC-GATATCTCACAG--AA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 67830 133 - 81011 agagaacccaacttATCGCACAGCCTAACCTC----CT-GTgtt----aggaa-----ta---tttgggttgtaagtaacacacacaacttaaacc-agatgaagcaagcatgagaatttattagaag--ggtatttgg-gatatctcacag--aa i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3172878 132 + 42029645 agagaatccaaATCAGGACACAGTCTGACCTC----CT-GTGTT-----GGAA-----TA---TTTGGGTTGTAAGTAAAAAACACAATGTGAACC-AGCCGAAGCAAACATGAGAATTTATTACAAG--GATGTTCAG-GATAGCTCATAC--AA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29949674 140 - 76506943 AGAGGCCCCAACTTATGATACAGTCTGATCT-----TG-CTGTCAGTGAGGAG-----CAGCACTTGGGTTGTAA-TAATGAACACAACTTGAACC-AGCTGAAACAAACATGGGGATTTATTATAAG--GATATTTGG-GATATCTCACAGAAAA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 653721 124 + 1032594 aaaaaa--CATTTAAAAAATTAGTCTGACTTC----CTCTTTG-----GGAAT-----TA---CCTGGGTTGTAAATAACACACACAACCTGACCA---C-GAGGAAAACATGAGAATTTATTA------GACATCTGA-GGTAACTCAAAG--AT i oryCun2.chrUn0106 I 8988 C 0 s speTri1.scaffold_137548 50669 116 + 100761 AAAACC--CACCT---ATGACAGCCTGGCTTC----CTGTTAGT----AAGAA-----TA---TTTGGATTGTAAGTAACAAACACAACATGAACC-AGC-AAAGTAAACAAGAGGCTTTATTA---G--GATATCTGG-ATTAT----------- i speTri1.scaffold_137548 I 2 C 0 s cavPor3.scaffold_248 208429 126 + 667635 AGAACC--CAACT----TGGCAGCCTGA-TTC----TTCTTAGT----AGGAA-----TA---CTCAGGTTGTAAGTAACAAACACAATTTAAGAA-AGCTGAAACAAATGTGAGAATTTATTA---GATGATATTTCA-AATATCTCACAG--AA i cavPor3.scaffold_248 I 2 C 0 s tupBel1.scaffold_132008.1-22537 15180 119 + 22537 AGAGAA--C---TTAAAACAGAGGTTGACTAA-------TTGTT----AGGAA-----TA---TTTAGGTT----GTAACAAACACAACTTGAACC-AGGTGACACTAACAGGATAATTTATTAGGGG--AATATTTGG-GATAGCTCAC-----A i tupBel1.scaffold_132008.1-22537 C 0 C 0 s otoGar1.scaffold_101698.1-26550 219 130 + 26550 agagaacccaaattatgacTGAGCCTGACTTC----CTGTTAGT----AGTAA-----TA---TCTGGATTACTGATTACAAAAACAACTAGAACA-AGCTGAAGCAAACATGAGAATTTATTAGCCG--G-TATTTGG-GGAATCTCAC-----A i otoGar1.scaffold_101698.1-26550 C 0 C 0 s micMur1.scaffold_51584 2157 132 - 5263 agggaacccaaaatatgacTGAGCCTGATGTC----CTGTTAGT----AGGCA-----TA---TTTGGAttgtaagtaacaaacacaacttgaacacaactgaagcaaacatgagaatttattagtag--gatacttgg-ggtatctcac-----a i micMur1.scaffold_51584 C 0 C 0 s panTro2.chr12 169946 124 - 135371336 agagaa--cAAGTTACGACATAGCCTGATTTC----CT-CTGTT----AGAAA-----TA---TTTGGGTT----GTAACAAACACAACTTGAGCC-AGATGAAGCAAACATGAGAATTTATTA---G--GATATTTGC-AGTATCTCACAG--AA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 207711 124 - 136387465 agagaa--caagttatgacaTAGCCTGATTTC----CT-CTTTT----AGAAA-----TA---TTTGGGTT----GTAACAAACACAACTTGAGCC-AGATGAAGCAAACATGAGAATTTATTA---G--GATATTTGG-AGTATCTCACAG--AA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 180216 121 - 134511895 AGAGAA--CAAGTTACGACATAGCCTGATTTC-------CTGTT----AGAAA-----TA---TTTGGGTT----GTAACAAACACAACTTAAGGC-AGATGAAGCAAACATGAGAATTTATTA---G--GATATTTTA-TG-ATCTCACAG--AA i rheMac2.chr11 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I e xenTro2.scaffold_1134 67141 0 + 183259 I a score=562355.000000 s hg19.chrUn_gl000223 42827 144 + 180455 GAATTCAACAA-TCAAGACATGAAA-------AGGGCAG-AGGTGGAC------CTGAACATGAAGACCAGAAGAACCAGGTACTGGAACACAATCGGGACTCTTTCTTGATTTT-----GCTTTCATCATGGCTTCATTCTTCTCTCTCACTGCAGACCATGT s rheMac2.chr11 180337 144 - 134511895 GAATTCAACAA-TCAAGGCATGAAA-------AGGGCAG-AGGTGGAC------CTGGACACGAAGACCAGAAGAACCAGGTACTGGAACACAATCAGGACGCTTTCTTGATTTT-----GCTTCTATGATGGCTTCGTTCTTCTCTCTCACTGCAGACCATGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 207835 144 - 136387465 GAATTCAACAA-TCAAGACATGAAA-------AGGGCAG-AGGTGGAC------CTGGACATGAAGACCAGAAGAACCAGGTACTGGAACACAATCAGGACTCTTTCTTGATTTT-----GCTTTCATGATGGCTTCATTCTTCTCTCTCACTTTAGACCATGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170070 144 - 135371336 GAATTCAACAA-TCAAGACATGAAA-------AGGGCAG-AGGTGGAC------CTGAACATGAAGACCAGAAGAACCAGGTACTGGAACACAATCGGGACTCTTTCTTGATTTT-----GCTTTCATCATGGCTTCATTCTTCTCTCTCACTGCAGACCATGT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 2289 133 - 5263 gaatTCAACAA-TCAAGACACAAAA-------AGGGCAGAGGGTGGAT------CTGGACGTC--------AAGAACCAGGTACTGGAACACAATCAAGAC----TCTCAACATT-----ACCTTCATGATGGCTTCATTCTTCTCTCTCATTGCAGACTATGT i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_101698.1-26550 349 144 + 26550 GAATTCAACAA-TCAAGACAtgaaa-------aggacag-ggatggat------ctggacatcgagacagtaagaactaggtactggaacacaatcaggactcattcttgacttt-----gttttcatgatggcttcattcttttctctcagtgcaggctatgt i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15299 120 + 22537 GAATTCAACAA-TCAAGGCATGAAA-------AGGGCAG-GGATCTAT------CTGGACATCAAGAC---ATGAACTAGGCATGGAGACACGATCACAACTGCTTC---------------------GATGGTTTCAT-----TCTCTCATTGCAGATTATGT i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 208555 138 + 667635 GAGCTCAACAG-TCCAGGAATAGAA-------AGGGCAG-AGATAAAT------ATGGACAGGCAGACAAGGTGAACCAGACATCAACACAAAATTAGCCC--TTTCTAGACAAC-----GATTCCATGACAGATTAACTCT----TGTCACTGCAGATCATGT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 50785 124 + 100761 ---CCCAACAA-TTGAAGCATGGAA-------AGGGCAG-AG-TAAAT------CTGGACATCAAGACAAGGAGAAGCAGGTATCA----------GGCCT--TTTCTGGACCTT-----GCTTCCACCATAGCTTCATCTT----CTCTACTGCAGACCACAT i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 653845 130 + 1032594 ---TTTAACCA-TCAGGTCGTGAAA-------AAGGCAG-AGATGGAA------GTGAACATCAAGGTAAGTTGAGCCAGGTGCCAGGACACAATCAGGAC--TTTCT-----TT-----GCTCCCATGATGGCTTCACTCT----TCTCACTGTAGACTGTTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29949814 137 - 76506943 AAATCCAATAAGTCCAGGCAGGAAA-------ATGGCAG-AGATGAAC------CCAGACTTCAAGAC---AAGAACCAGATCCTGGAACCCAGCCAGGAT--GCTCATGACTTG-----GCTTCCATGGTGGCTTCACACT--TCTCTCATTGCA-GCTATGC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173010 119 + 42029645 AAATGCAACAA-TCAAGGCATGAAAAGGGTAGAGGGCAG-AGGTGACC------CCGGACATCAGGACCAGAAGAACCAGATCCTGGAGCACGA--------------------------GCTTCCAT---GGCTTTGTTCTGGCCTCTAACTGCA-------- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 67963 114 - 81011 GAATGCAACAA-TCAAGGCATGAAA-------AGGGCAG-ATGTGAGT------CTGGACATTAGGAC---AAGAACCAGGTCCCGGA--ATAA--------------------------GCTTCCA----GGCTTCACTCTTCTCCCTCACTGCAGACTATGC i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64129950 144 - 94057673 GAACCCAACAA-TCAAGGCATGGAG-------AGGGCAG-GGATGAAT------CTGGACAGCAAGACAAGAAAAACCAGAAACTGGGACTCAGTCAGGAC--TGTCCT---TTGACTTTGCTTCTGTGAAGGCTTCATTCTTCTCTCCCAGTGCAGACTCTGC i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90216 111 - 3408981 AAATTAAACAA-TCAAGGCATGAAG-------AGGGTGA-AGATGAAT------CTAGAAATCAGTAC---AG------------------------------TTTCTTGACTCT-----GCTTCCATGATGGTTTCATTCTTCTCTCTTATTACAGACCACGT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 2954 140 + 3923 -aatTCAATGA-TCAAGGCATGAAT-------AGAACAG-AAATGGAT------CTGAACATCAAGAC---AAGAAGCAGATACTGGGTCACAATAAGGACTCTTTCTTAACTCT-----GCTTCCATGATGACTTCCTTCTTCTGTCTCACTACAGAGCATGC i choHof1.scaffold_224036 C 0 C 0 s xenTro2.scaffold_1326 50588 140 + 95661 GAATCCTGGAT-TTAAAAAAACAAA-------AAAACAT-TGTTGTCTTTTCTCCTTTAACTATACGCCAGTAAATGCAAATAATGCCAACCAATTAGGACCCTTTCTTGTTTGT-----A----CATTATAA-TTCTTTCTTTCCGTTTACTG--GACCA--- i xenTro2.scaffold_1326 n 0 n 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 44136082 0 + 71658100 I a score=262298.000000 s hg19.chrUn_gl000223 42971 102 + 180455 TTC--TCCATGTGGCAGAAAAC--AGCCACTCAC-TGCACCCACATTTAAA---T--ATAGCTTGTGAT-GCAAAAATTACACAGACAAAAAAGATAGTACTAGCT--TTCTAGA s rheMac2.chr11 180481 101 - 134511895 TTC--TCCATGTGGCAGAAAAC--AGCCACTCAC-TGCACCCACATTTAAA---T--ATACCTTGTGAT-GCTAAAATTACACAGAC-AGAAAGATAGTCCTAGCT--TTCTAGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 207979 102 - 136387465 TTC--TCCATGTGGCAGAAAAC--AGCCACTCAC-TGCACCCACATTAAAA---T--ATAGCTTGTGAT-GCAAAAATTACATAGACAAAAAAGATAGTCCTAGCT--TTCTAGA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170214 102 - 135371336 TTC--TCCATGTGGCAGAAAAC--AGCCACTCAC-TGCACCCACATTTAAA---T--ATAGCTTGTGAT-GCAAAAATTACATAGACAAAAAAGATAGTCCTAGCT--TTCTAGA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 2422 104 - 5263 TTC--AACAT---GTAGAAAACATAGCCACTAAT-AGCACCCATATTTGAATATT--ATAGCTTTAGCT-CTTAAAATTATATAGACAAAAAAGATAATTGCAGCT--TTCCAGA i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_101698.1-26550 493 89 + 26550 ttc--tacatgtggtagaaaACACAGCCATTGAA-AGCACCTATATTTAAATATT--ATAGCTTTAGCTGCTAAAAAGTATATGGACCAAAAAG--------------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15419 96 + 22537 TTT--CCCATGTGGTAGAAAACATAGCCATTGATAAGCACTCATGTTTAAA---T--ACACTTTCAGCT-GCTAAGTTT---------TAAGATATGATCCCAGCT--TTTGGGA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 208693 97 + 667635 TTCATTCCATGGGGCTGGAAATAAAGCCACCGAA-AGCACCCACATTCAAA---A--ATACTCCCAGCT-TCTAAAATTAT----ATAGA-------GGCCCAGCTTCTTCTAGT i cavPor3.scaffold_248 C 0 I 11 s speTri1.scaffold_137548 50909 77 + 100761 TTC--TCCATGGAACAGAAAACA---------------GCCAACATTAAAT---ATTATAACTCCAGCA-ACTAGAG--------ACAAG-------AGTCACGCT--TTCCAGA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 653975 88 + 1032594 TTC--TCCACATGACAGAAAACC---------------ACCCGTATTTAAT---T--ATAGCTTCAGCT-GCTAAAATTATA--GACAAAAAAAGATAGTCCAGCT--TTCCAGG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29949951 107 - 76506943 CTC--CTCATGTGGTAGAGAACACAGCCACTGAC-ACCACTCACATTTATGTACC--AAAGCTTCAGTT-GTTAAAATTATATAGACAAACAAGAGAGTCCTAGCT--TTCCAGA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173129 100 + 42029645 -CC--CCCACATGGTTG---GGGAAACCACGGAG-AGTTACCATGTGTATATGTT--ACAGCTTCAGTC-TCTCAAACTATACA---ATGAAGGGCAGTCCCAGCT--TTCCAGA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68077 105 - 81011 TTC--CCTATGTGGTGG--AAAGCAGCCACCGTG-AACACCCACGTTCATAGATT--ACAACCTCAGTT-GCTAAAACCGTATAGACAAACAAGATAGTCCCAGGT--TTCCAGA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130094 107 - 94057673 TTC--TCCAAGTGGTAGAAAACACAGCCACTGAT-AGCCCCCACATGTATATATT--TCAGCTTcaact-gttaaaattatatagacaaacaagacagtcccagct--tcccaga i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90327 103 - 3408981 TTC--TGCACGTGGTAGAAAACAGAGCCACAGGGTAGCACCCAAATTCAAATATT--ACAGCTTTGTTT-GCTAAAGTTATATACACAAATT-----GTCCCAGCT--TTCAAGA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3094 104 + 3923 TTC--TCCATGTGGCAGAAAACACAGCCACCGAG-AGCTTCAAAATCTAAACCTT--ACAGCCTCAGCT-GCTAAAACT-CATTAACAAATGAGA--GTCCCGTCT--TTCAAGA i choHof1.scaffold_224036 C 0 C 0 s danRer6.chr4 33086492 98 - 71658100 TCT--TCCATATAATGACAGGTA---CCATTGTA----GCCAGCAATTAAG---A--ATATTTTTAATT-TTGCTGATCCTAGACACAAAAATTCAAGTGCTGTCT--CACTAAA i danRer6.chr4 n 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=213622.000000 s hg19.chrUn_gl000223 43073 31 + 180455 AGCTTTCTAGTGGGAAAGATA---AAACATGCAA s rheMac2.chr11 180582 31 - 134511895 AACTTTCTAGTGGAAAAGATA---AAACATGCAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208081 31 - 136387465 AGCTTTCTAGTGGGAAAGATA---AAACATGCAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170316 31 - 135371336 AGCTTTCTAGTGGGAAAGATA---AAACATGCAA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 2526 31 - 5263 AGCTTTATAATGGAAAAGATA---AAACCTGTAA i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_101698.1-26550 582 25 + 26550 ------ATAATGGAAAAGATA---AAACATGTAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15515 31 + 22537 AGCTTTCTAATAAAAAAGGTA---AAGCATGCGA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_134021 89 31 - 1769 AGCCATCTAATAGAAAAGATA---AAACATACAA i dipOrd1.scaffold_134021 N 0 C 0 s cavPor3.scaffold_248 208801 24 + 667635 AGACTTCTAATAG-------A---AAACATGCAA i cavPor3.scaffold_248 I 11 C 0 s speTri1.scaffold_137548 50986 31 + 100761 AGCCTTCTAATGGAAAAGATA---AAACATACAA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654063 22 + 1032594 AGCTTTCTAATAT------TA---AAAAAGA--- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950058 31 - 76506943 AGCTTCCTAATGGGAAAGATA---AAACATGCAA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173229 25 + 42029645 AGCTTTCTAATGGAAAAGAAA---------GTGA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68182 31 - 81011 AGCTTTCTAATGGAAAAGACA---AGACATGCGA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130201 31 - 94057673 agctttctagtggaaaagata---aaacatgcaa i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90430 31 - 3408981 AACTTTCAAATAGAAAAGGTA---ACACATGCAG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3198 30 + 3923 TGCTTTCTAGTAGGAAAGTTA---A-ACATGCAA i choHof1.scaffold_224036 C 0 C 0 s danRer6.chr4 33086590 34 - 71658100 AGATTTTTAATAACAAAAACACATAAATATTTAA i danRer6.chr4 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=193133.000000 s hg19.chrUn_gl000223 43104 118 + 180455 TGATTATATTATCACAGTGAGAA-ACACA---CGTACAGGTTCATA-----T-------------AGATTCAATAGGCA-TTAACAA-GGAACAA--GGGCATTTC-----AATTG---C---AGATTTG--------------------------C---AAA-AAC-----ATAA---G------T----GATA----------ATAGAAAT--------- s rheMac2.chr11 180613 119 - 134511895 TGGTTATATTATCACAGTGAGAA-ACACA---CGTACAGGTTCATA-----T-------------AGATTCAATAGGCA-TTAACAA-GGAACAA--GGGCATTTC-----AATTG---C---AGATTTG--------------------------C---AAA-AAC-----GTAA--TG------C----AATA----------ATAGAAAT--------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208112 118 - 136387465 TGATTATATTATCACAGAGAGAA-ACACA---CATACAGGTTCATA-----T-------------AGATTCACTAGGCA-TTAACAA-GGAACAA--GGATATTTC-----AATTG---C---AGATTTG--------------------------C---AAA-AAC-----GTAA---G------T----GATA----------AGAGAAAT--------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170347 118 - 135371336 TGATTATATTATCACAGTGAGAA-ACACA---CGTACAGGTTCATA-----T-------------AGATTCAATAGGCA-TTAACAA-GGAACAA--GGGCATTTC-----AATTG---C---AGATTTG--------------------------C---AAA-AAC-----ATAA---G------T----GATA----------ATAGAAAT--------- i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 2557 117 - 5263 TG---ATATCATCACAGTGGGAA-ATACA---TGTATAGGTTCATA-----C-------------AGGTTGAATGGGCA-TTAACAA-AGAACAA--GGACATTTC-----AGCTG---CAACAGATTTG--------------------------C---AAA-AGC------TAA---G------A----GATT----------ATAGAAAT--------- i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_101698.1-26550 607 102 + 26550 TGATTATATTATCACAGTAGGAA-ATACA---TGTATA-------------------------------------GGCA-ATAACAA-AGAACAA--GGGGATTTC-----AATTG---CAATAGATTTG--------------------------C---AAA-AGC-----ATAA---G------G----TATT----------ATAGAAAC--------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15546 111 + 22537 T-----TGTTATCACA----AAA-ATACA---TGGAAAGATGCCTG-----T-------------TGGTTGACT-GGCA-TTAACAA-GGAATGA--GGTCATTTC-----AGTTG---C---AGATTTG--------------------------A---AAA-AGC-----ATAAAATG------A----AAGA----------CCACAAAT--------- i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_134021 120 121 - 1769 TAGCTATCTTATCAT-GTGAGAA-ATACA---TGTTCAGATTCATA-----TGAACAGGTATCAAATATTGGGTAAACA-TTAACAAGATTACAA------------------------T---AGATTCG--------------------------C---AAA-AAC-----ATAG---A------ATAAGGATT----------GCAGAAAT--------- i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 208825 127 + 667635 TGATTATGTTACCATAGTGACAA-ACACA---TG------TTGTCA-----TGAACAGACTTATAGTACTGGACAAGCA-GTAACAA-ATAACAA--GGGCGTTTC-----ACT-G---C---AGATTTG--------------------------C---AAA-AAC-----ATGA---G------ATGA-AACT----------ATTGAAAT--------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51017 157 + 100761 TGATTATATTGTCACAGTGAGAA-ATACA---TGGATAGGTTCATA-----ACCACATGCATCAAATATTGGGTAAGCA-TTAACAA-AGAACCA--CAGCATTTA-----GTT-GCAAT---AGATTTG------AAAAAAAAAATCCACCCCCAA---AAA-AAC-----AAAG---A------TCAGAGAGT----------ACAGAAAC--------- i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654085 120 + 1032594 -GATTATATTATCACAATGATAATACAGA---TA-AAAGGTTCATT-----T-------------AGGTTGAACGAACA-TTAACAA-GGAACAC--CGGTATTTC-----AGC-----T---AGATATG--------------------------C---AAATGAC-----ATTA---G------ATGAGAGAT----------GTAGAATC--------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950089 141 - 76506943 CGATTTTATCACCAGTG----AA-ATACA---TGTACAGGTTCACA-----T-------------AGGTTGAATAGGTATTTAACAA-GGAACAA--AGGCATTTC-----AGTGG---C---AGTAGATTGACAAAAAAGCACACACACACAAAAG---TGT-AAA-----ATGA---G------A----GATT----------GTAGAACT--------- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173254 118 + 42029645 CGGTTATATTATCACAGTGACAG-ACACG---TGTGCAGGTTCATA-----A-------------AGTGTGGACAGGCA-TTAACAA-GGAACAC--AGACACTTC-----AGTGA---C---AGAAGAT--------------------------G---CAA-AAA-----GTGC---A------G----GACT----------GTGGAAAC--------- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68213 110 - 81011 TGATTGTATTACCACAGTGACAA-ACACA---TGTGC-GGTTCATA-----A-------------AGGATGGCCAAGCA-TTAATAA-GGAACAT--GGGCATTTC-----AGTGA---C---AGGAGAC------------------------------------------TTGT---G------A----GATT----------GTAGAAAT--------- i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130232 121 - 94057673 TGATTATATTATCACAGTCACAA-ACACA---TGTACAGGTTCATA-----C-------------AGGTTGGGTAGGCA-TTAACAA-GGAAAAA--GGGCATTTCCATAGATTTG---C---AAAAAGC-------------------------------AT-AAG-----ATGA---G------A----GACT----------GTAGAAAT--------- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90461 123 - 3408981 TGATTGTATTATCAGAATGAGGA-ATACA---TGTGCAGATTCATA-----C-------------AGGCTGAATAGGCT-TTATTAG-GAAAAAATGAAACATTCC-----AGTTG---CAGTAGATTTT--------------------------C---AAA-AGC-----ATGA---G------A----AGTT----------GTAGGAAT--------- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3228 123 + 3923 TGATTATATTAC---AGTGAGAA-ATATA---CGTACAGGTCCGTA-----T-------------AGGTTGGATAGGCA-TTATTGA-GAAGAAACAGGGCTTTT-------GTCA---CTGTAGATTTG--------------------------C---AAA-AGTATAAGATGA---G------A----GATT----------GTACAAAT--------- i choHof1.scaffold_224036 C 0 C 0 s oryLat2.chr23 10761180 126 + 24050845 tgattgtgtgattgTA----CAA-GAACA---TACATTTGTTC--------G-------------ATTATGAACA---------------ATTTG--GGGCTCCAT-----AGATC---T---GAACTAC--------------------------AGCTAAC-AGC-----ACTT---AAACAACA----GATGGTAAAATAGATGAGAAACAATAGAATT i oryLat2.chr23 N 0 C 0 s danRer6.chr4 33086624 115 - 71658100 ---TTGTG-GATTTAT----CAG-GAATATCTTCTATATATTCATAATTCAA-------------ATTATGAACAGGCA-TTATCTC-ACATTTG--GAGATATTC-----AGCTT---T---AGACCAG--------------------------A-------AAC-----ACTT---G------A----GATG----------TCAGAAAT--------- i danRer6.chr4 C 0 n 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=132279.000000 s hg19.chrUn_gl000223 43222 69 + 180455 CTCAA-GGAACTACAA---GTTGTTCACAGA-GG--------CC-AGAA------------AATATTGCATAGGAGGAA----AAA----GTTTTCAGA----AATG s rheMac2.chr11 180732 68 - 134511895 CTCAA-GGAACTACAA---GTTGTTCACAGA-GG--------CC-AGAA------------AATATTGCATAGGAGG-A----AAA----GTTTTCAGA----AATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208230 69 - 136387465 CTCAA-GGAACTACAA---GTTGTTCACAGA-GG--------CC-AGAA------------AATATTGCATAGGAGGAA----AAA----GTTTTCAGA----AATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170465 69 - 135371336 CTCAA-GGAACTACAA---GTTGTTCACAGA-GG--------CC-AGAA------------AATATTGCATAGGAGGAA----AAA----GTTTTCAGA----AATG i panTro2.chr12 C 0 C 0 s micMur1.scaffold_51584 2674 73 - 5263 CTCAA-GGAATTACAA---GTTGTTCAAGGA-GG--------CC-AGAA------------AATACTGCATAGGAGGAA----AGATAAAACGTTCAAA----AATG i micMur1.scaffold_51584 C 0 M 1586 s otoGar1.scaffold_101698.1-26550 709 56 + 26550 CTCAA-GGAACTGCAA---GTTGTTCAAGGA-GG--------CC-AGGA------------AATATTGCATAGGAGGAA----ATG--------------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15657 68 + 22537 CTGGA-GGGACTGGAA---GTATTTGGAAGATAT--------CC-ATAA------------AACATTGTGTAGACAGAA----AAA----GTTT--AGA----AATG i tupBel1.scaffold_132008.1-22537 C 0 I 3 s dipOrd1.scaffold_134021 241 61 - 1769 GTAGATGATGTTTCAA---GGAGGCC-------------------AGAA------------AATATTCCAAAGGAGGAA----AGA----GTGTGCAGA----AATG i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 208952 73 + 667635 CTTAA-GAAACTGCAA---GTAGGTCACAAA-GG--------TG-AGAA------------AATATTCCATAGGTGGAA----ACATAAGGTACTTACA----AATT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51174 72 + 100761 CTCTA-GGAACTGCCA---ATAGTTCAAGGA-AA--------CC-AGAA------------AATATTGCATAGGAGaaa----aaa-attatgttgaaa----aata i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654205 66 + 1032594 TAAAG-TAAACTATGA---GTAGTTG-------G--------CC-AGAA------------AACATCGAACAGGAGGAA----AGA-TGAATGTTGACA----AACA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950230 73 - 76506943 CTCAA--------------ATAGTTTAAGGA-CG--------CA-AAAACAAAACAAAACCAAAACTGTAAGAGGAAAG--ATAAA----GTATTCAGA----AATT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173372 69 + 42029645 CTCAA-GGAACTGCAG---ATAGTTCAAGGA-GG--------CCAAAAA------------AGCCATGTGCCAGAAAA-----ATG----CTATTCAGA----AGTG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68323 68 - 81011 ACAAA-GGAACTGCAA---GTAGTTCAAGGA-GG--------CC-AAAA------------AGTACTGTGCAGGAGGA-----AAG----ATATTCAGA----AATG i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130353 71 - 94057673 CTCAA-AGAACTGTGA---GTAGTTCAAGAA-GG--------CC-AAAA------------AAATGTGTGTGAGGAAAG--TTAAA----GTATTCAGA----AATG i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90584 70 - 3408981 CTCAA-GGAACTGT------AAGGTCAACTG-GG--------AC-AGAA------------AATATTGTGTAAGAGGAAGGATAAG----GCATTCCAA----AATG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3351 73 + 3923 CTCAA-GGTACTGCT----GTAGTTcaatga-gg--------cc-agaa------------aatattgtg---gagtaatgataaa----gcactcaagagatagtg i choHof1.scaffold_224036 C 0 C 0 s oryLat2.chr23 10761306 79 + 24050845 -TTAA-GagagcaaacatatgttttgtAAAA-GGCAGATCTGCC-CAAA------------ACAAATACAACTAATTTT----GAA----TTGTTCTAA----AGAC i oryLat2.chr23 C 0 C 0 s danRer6.chr4 60835991 67 + 71658100 CACAA-AAAATGAAAT---TTTTTTGAAAAA-----------TC-GCAA------------AAAATTACAAAAAATGAC----AAT----CTTTGGAAA----AATT i danRer6.chr4 n 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=4975.000000 s hg19.chrUn_gl000223 43291 76 + 180455 AT------A---GATAGATAGGCATTGGTTTATAC-----AAAAG------TCCTTACATACCATAAGGAGAATGTTACACTTT-----AAG---TCCACAATA s rheMac2.chr11 180800 79 - 134511895 AC------AGTGGATAGATAGGCATTGGTTTGTAC-----AAAAG------TCCTTGTATACCGTAAGGAGAATATTACACTTT-----AAG---TCCACAATA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208299 76 - 136387465 AC------A---GATAGATAGGCATTGGTTTGTAC-----AGAAG------TCCTTGCATACCATAAGGAGAATGTTACACTTT-----AAG---TCCACAATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170534 73 - 135371336 AC------A---GATAGATAGGCATTGGTTTGTAC-----AAAAG------TCCTTGCATACCAT---GAGAATGTTACACTTT-----AAG---TCCACAATA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 765 75 + 26550 AC------A---ATGAGAT-GACATGACTTTGTAT-----AAAAG------TCCTTGCATACCATGATGAAAACATCATACCTT-----AAA---TACACAATA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15728 75 + 22537 GG------A---ATGAGATAGGCATGGGTTTGTATTTGTATAAAG------TCCTTACATACCATAATGAGGGTGTAAAACTT--------------CACAAAG i tupBel1.scaffold_132008.1-22537 I 3 C 0 s dipOrd1.scaffold_134021 302 70 - 1769 AT------G---AAATAC---ATATGGGTGTATGT-----AAAAG------CCCTGGCATATCATAATGATGTTGTTACACAGT-----TAT---TTCAC---A i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209025 64 + 667635 AT------C---A--------ATATGCATG-ACAT-----AGAAG------TCCTGGCAT---ACAAGGAGGTTACTACATTTT-----AAG---TGCACAATA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51246 68 + 100761 attttaaaa---aaataCT-GGCATGGGTTTGTAT-----AAAAG------TCCTGGTATAATTCAATGAAG------------------AG---TCCACAGTG i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654271 72 + 1032594 AT------G---AGGGGATGGGCATGGGCCTGTGT-----AAAAG------TCTT----CAATACCATAAGGGTATTACACCTT-----AAA---TCCACAACG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950303 69 - 76506943 -------------ATGAACAGGTATGGTTTTGTAT-----AAAAG------TCCTCATATACCAT---GAGGATATTACAGCTT-----AAG---TCCACAATT i bosTau4.chr17 C 0 I 283 s canFam2.chr26 3173441 68 + 42029645 -------------ATGGACAGGC-TGGGTTGGTAC-----AGAGG------TCCACATTGACCAT---GTGGGCGGTACACTTC-----AAG---TCCGCAATT i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68391 46 - 81011 -------------ATGGATAGGC-CGGATTTATAC-----AGAAG------TCCTTATT------------------------------AAG---TCCACAATT i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130424 68 - 94057673 -------------ATGGAGAGGCATGGATTTGTAT-----GAAAG------TCCTCAAT-ACCAT---GATACCACACTTTCTT-----AAG---TCCACAATT i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90654 75 - 3408981 ---------GTGA----AGAGGCATGGGTTTGCAT-----AAAAG------TCCTTGCATACCATAATGAGAATATTACACCTTC--ATAAG---TCCACAATG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3424 76 + 3923 ---------gtgaagagagaggcatgggtttgtat-----aaaag------tccttgcataccataatgag---tttatgttttc--acaac---tccacagtg i choHof1.scaffold_224036 C 0 I 4 s oryLat2.chr23 10761385 55 + 24050845 ---------------------GTGTAATATcatca-----aaatg-------------------ta--aacaatgaaATTCATTAGAGAAATACCTtcataa-- i oryLat2.chr23 C 0 C 0 s danRer6.chr4 60836058 71 + 71658100 ---------------------GCAAAAAATCACAA-----AAAAGAATTTTTTTTGAAAAATCACA--AAAAATGAAATTTTTTTGAAAAAT---CGCAAAA-- i danRer6.chr4 C 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=57677.000000 s hg19.chrUn_gl000223 43367 43 + 180455 AGCCACACGATATTTCAACATGAGGCATGT-------GAAATCAGGGTTG--------- s rheMac2.chr11 180879 41 - 134511895 AGCCACATGATATTTCAAC--GAGGCATGT-------GTAATCAGGGTTG--------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208375 43 - 136387465 AGCCACACGATATTTCAACATGAGGCATGT-------GAAATCAGGGTTG--------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170607 43 - 135371336 AGCCACACGATATTTCAACATGAGGCATGT-------GAAATCAGGGTTG--------- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 840 35 + 26550 AGCCATACAATATTTCAACA--------AT-------ATAATCAAAGTTG--------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 15803 15 + 22537 AGCCACACGGTTTCT-------------------------------------------- i tupBel1.scaffold_132008.1-22537 C 0 I 471 s dipOrd1.scaffold_134021 372 41 - 1769 AGCCACACAGTATTTAAACATGGGA--TGT-------GTAATCAGAATTT--------- i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209089 41 + 667635 AGTCACACAGTATTTCATCATGGAA-GTGT-------GTGAGAAGAGTT---------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51314 39 + 100761 GAT--CACAATATTTAAACATGGAA-ATGT-------GTTACCAAATTT---------- i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654343 42 + 1032594 AACCACATGGTATTTCAACAAGGGA-GTGT-------GTAATCTAAGTTG--------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950655 42 - 76506943 AGCCATATGGTATTTCAATACAAGA-GTGT-------ATAGTCAGAATTG--------- i bosTau4.chr17 I 283 C 0 s canFam2.chr26 3173509 42 + 42029645 AGCCCCATGGAATTTCAGCAGAGGA-GTGC-------GAAGTCAGAATTG--------- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68437 42 - 81011 AGCTACCTGCTGTTTCAACACAGAA-GTGT-------ATAATCAGAATTG--------- i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130492 31 - 94057673 A-----------TTTCAACACACAG-GTTT-------GGAATCAGAATTG--------- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90729 42 - 3408981 AGCCACACAATATTTCAACAGAGGA-GTAT-------ATACTCAGAATTT--------- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3504 38 + 3923 agcctcacaatagttcaacaggaga-gcat-------a----cagagttg--------- i choHof1.scaffold_224036 I 4 C 0 s oryLat2.chr23 10761440 37 + 24050845 ----------gacaaaaaaaaagaa-agat-------aaaactagaaaaaacgta---- i oryLat2.chr23 C 0 C 0 s danRer6.chr4 60836129 48 + 71658100 ----------AATCACAAAAAATGA-ACATTTTTGGAAAAATCGCaaaaaataaaattt i danRer6.chr4 C 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=-44434.000000 s hg19.chrUn_gl000223 43410 57 + 180455 CATTT--------A-AAAATAATCA--CTATGTATACATGT-GAAAAAT-----------GGACT------GAA-A--AATGATAGCAA s rheMac2.chr11 180920 57 - 134511895 CATTT--------A-AAAATAATCA--CTATGTATACATGT-GAAAAAT-----------GGGCC------GAA-A--AATGATAGCAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208418 57 - 136387465 CATTT--------T-AAAATAATCA--CTATGTATACATGT-GAAAAAT-----------GGACT------GAA-A--AATGATAGCAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170650 57 - 135371336 CATTT--------A-AAAATAATCA--CTATGTATACATGT-GAAAAAT-----------GGACT------GAA-A--AATGATAGCAA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 875 56 + 26550 CATTT--------T-AAAATTATCA--ACATGTCTAAGTGT-G--AAAT-----------GGATT------AAATG--AATGAAACCAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 16289 55 + 22537 CATTT--------A-AAA---ATCA--GTGTGT-TAAGTGT-GAAAAAT-----------GGATT------AAA-AAGAATGAAAGCAA i tupBel1.scaffold_132008.1-22537 I 471 C 0 s dipOrd1.scaffold_134021 413 42 - 1769 CATTT--------T-AAAATATTCA--CTATGTG----------GCAGT-----------------------AT-G--AAAATTAGGGA i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209130 37 + 667635 -----------------GATAATCA--CTATGAAA-------ATGAAGT-----------------------AA-A--AACAAAGGGAA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51353 61 + 100761 -GCAT--------T-AAAATGACCA--CTACATGT-------AAGAAGTGAAGAAAATGAACAAA------AAA-G--AATGGAAGCAA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654385 50 + 1032594 CATTT--------A-AAAATAATCA--CTACACATTC-----ACAAAAT--------------CT------GAA-A--AATAAACTGAG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950697 59 - 76506943 CATCT--------T-AAAATAACTAGTATATATATAAGTGC-AAAAAAT-----------GGACT-----GAAA-G--GATGAAAAGG- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173551 38 + 42029645 CATCT--------C-AAAGCA---------------ACTCC-TAAGCAT-----------GGAAT--------------CTGAAGACA- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68479 56 - 81011 CACCT--------T-AAAATA------CTATGTGT-AGTGT-GGAAAAT-----------GGACT--AAAAAAA-G--AATGAAGGCAA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130523 60 - 94057673 CATCT--------T-AAAATAACTA--CTATGTGTAAGTGT-GAAAAAT-----------GGACT---AAGAAA-G--AATGAAGGCAA i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90771 64 - 3408981 AACTT--------TAAAAACAACCA--TTATGTACAAGTGTGGAAAAAT-----------GGACAAAAATGGAA-G--AACGAAGGCA- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3542 60 + 3923 cattt--------t-aaaataatca--ctatgtacaagtgt-gaaaaat-----------ggactaaagaggaa-g--agtgaaag--- i choHof1.scaffold_224036 C 0 C 0 s oryLat2.chr23 10761477 41 + 24050845 -------------c-aaatgaaatg--ttttttttacatta-aaatatc--------------------------t--TTTAACAA--- i oryLat2.chr23 C 0 C 0 s danRer6.chr4 60836177 56 + 71658100 --ttttgaaaaatc-aaaaaaaata--atttttt----ttG-AAATATC-----------GCAAA------AAA-T--CACAAAAA--- i danRer6.chr4 C 0 n 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=-6476.000000 s hg19.chrUn_gl000223 43467 62 + 180455 GGTG-----CAG-AAAACATGCATGCA-----TCTGCAAGGGTTATGGTTGG------TTATC-----AGCA-GTTAGGC----CAG-GG s rheMac2.chr11 180977 66 - 134511895 GGTG-----CAG-AAAACATGCATGCA-----TCTGCAAGGGT--TGATTGGTTAAGTTTATC-----AGCA-GCTAGGC----CAG-GG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208475 67 - 136387465 GGTG-----CAG-AAAACATGCATGTG-----TCTGCAAGGGTTATGGTTGGTTAAGTTTATC-----AGCA-GTCAGGC----CA--GG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170707 62 - 135371336 GGTG-----CAG-AAAACATGCATGCA-----TCTGCAAGGGTTATGGTTGG------TTATC-----AGCA-GTTAGGC----CAG-GG i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 931 64 + 26550 GGTG-----CAA-AAAA-ATCCATGTG-----ACTACAAAGGTTATGGATAA----GTTTATC-----AGCACTTTATGC----CAG-GC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 16344 61 + 22537 GGTA-----TAA-GAAA---ACATGGA-----TGTGCAAAGGCCATGGATAT----ATTTATC-----AGCA-CTTAGGC----TGG-GG i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_134021 455 52 - 1769 AATA-----TAT-A---------TGTA-----GCTGTGAGGATC-----------ATGATATGTCATCAGTA-CTTAGGA----AAG-G- i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209167 56 + 667635 AGTA-----CAC-AAAATACACTAGTA-----GCTACACGGATG-----------AGCCTGTG-----AACA-CTTAGGA----CAT-G- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51414 63 + 100761 GGTG-----CAG-AGAGTGTGCCTGAA-----GCTGCAAGGGCCCTGGAT-----AATTAATG-----AGCA-CTCAGAA----CAG-TA i speTri1.scaffold_137548 C 0 I 3 s oryCun2.chrUn0106 654435 67 + 1032594 AATATGGTTCAA-AAAGTATACATACA-----GTGCCAAGGGTCATGGA------TATTTATA-----AGCA-CTTAGGG----CAA-GG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950756 65 - 76506943 ---G-----CAA-AAAATATGCATACA-----GCTGCAAAAGTCATGGATGAATTAGTTAACT-----GGCA-TGCAGGC----CAGCA- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173589 37 + 42029645 -----------------------------------------GTCACAGTGGGGTGAGCTCATC-----GGCA-CTTTGGC----CAG-A- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68535 66 - 81011 GGTG-----CAAGAAATTATACATACA-----GCTACAAGGGTCATGGTTGGGTTAGCACATC-----AGCA---TAGGC----CAG-A- i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130583 66 - 94057673 GGTG-----CAA-AACGTGTGCACACA-----GCTGCAGG-GTCACGGCTGAGCTCGGTCGCC-----AGCT-CTCAGGC----TGG-A- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90835 61 - 3408981 ---C-----AAA-AAAATATGCATGCA-----GCTACAAGTGTCATGGATTA----GTTTATT-----TGCA-CTTAGGC----CTG-TT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3602 34 + 3923 -----------------------------------------GTCATAGATAA----GTTTACC-----AGCA-TTTAGGC----CAG-GT i choHof1.scaffold_224036 C 0 C 0 s oryLat2.chr23 10761518 70 + 24050845 ------GCTCAG-CAAATAATGCTGTAACAATGCTGTAAAATCAACGGTTGG-----ATTGGC-----AGCA-GTTATTCCTAACAG-G- i oryLat2.chr23 C 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr4 60836233 0 + 71658100 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=172508.000000 s hg19.chrUn_gl000223 43529 66 + 180455 GTAGGTGTTGAACATCTGAAAGCTCATTGGTACC---------TGTATAG--ACTAAT--AAGACCTCTGAAAT---TGACA s rheMac2.chr11 181043 68 - 134511895 GTAGGTGTTGAGCATCTGAAAGCTTATTGGTACC---------TGTATAGCCATTAAT--AAGACCTCTGAAAT---TGACA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208542 66 - 136387465 GTAGGTGTTGAACATGTGAAAGCTCATTGGTACC---------TGTATAG--ACTAAT--AAGACCTCTGAAAT---TGACA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170769 66 - 135371336 GTAGGTGTTGAACATCTGAAAGCTCATTGGTACC---------TGTATAG--ACTAAT--AAGACCTCTGAAAT---TGACA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 995 59 + 26550 CTAGATGTAGGACATCTGAAAGCTTACTG------------------TGC--GCTAATTGTAGCTCACTGAAAT---TGACA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 16405 67 + 22537 CT--GTCCTGGATATTTGACAGCTTGCTGGTACCAC------ATCTGTAG--ACTGAC--AAGCCCAATGAATT---TGATA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_134021 507 62 - 1769 TATTAGACTGC-----TGGAAACTTGTTGGTACTGT------ATTTGCAG--ACTGA---AAGCCCACTGCAA----CAACA i dipOrd1.scaffold_134021 C 0 I 116 s cavPor3.scaffold_248 209223 68 + 667635 GCAGATACTGCAAATGTGAAAGACTGCTGGAACTGT------ATCTATAG--ATTAAC--AAGCACAGAGGAA----TGATG i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51480 75 + 100761 TCAGGTGCTAAGCATCTGAAAGCTTTCTGGTACCCTAAGCAAATAAGTAG--ACAGGC--AGGCCCACTGAGAT---TGACA i speTri1.scaffold_137548 I 3 C 0 s oryCun2.chrUn0106 654502 66 + 1032594 CTAGATGCTGGACATCTGAAAGCTTACTGACAT---------ATATGCAG--ACTAAC--AAGCCCATTGAAAT---TGACA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950821 69 - 76506943 CTAGGTGCTCAGCATCTGAAAACTTGTTGGTATTAT------GTTTGTAG--GCTAAC--AAACTCAATGAAAT---TGACA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173626 69 + 42029645 CTAGGTGCTGAACATCCAGCAGCTTGTTGGTTCAGT------ATTTGTAG--ACTAAG--GAGCTGAGCAAAAT---TGACA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68601 69 - 81011 CTAGGTGCTGAACACCTAGCAGCTTGCTGGTACCAT------ATCTGTAG--ACTCAT--GAGCCCAGCAGAGC---TGACA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130649 69 - 94057673 CAAGGTGCTGAGTGTCTGAAGGCTGATTGGGGCCGT------ACTTGAGG--ACTAAC--AAGCCCCCTGAAAC---TGACA i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90896 69 - 3408981 CTAGGTGTTGGACATCTGAAAGCTTGTTGGTACCAT------ATTTGTAG--AATAAC--AAACCCACTGAAAT---TGACA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3636 66 + 3923 TTACATGTTGGACACCAGAAGCCTCATTGGTAC---------ATTTGTAG--ACTAAC--GAGCCTAATAAATT---TCACA i choHof1.scaffold_224036 C 0 C 0 s oryLat2.chr23 10761588 64 + 24050845 GAAGGTGGTCAAGGCGCAGAGAACACCCATTCTCCC------ATTGACTG--AGTCTT--TAGGCTACTGAAAT-------- i oryLat2.chr23 C 0 N 0 s danRer6.Zv8_NA2724 84753 58 - 115070 ATATATGTTCTAAAACTAAGGAATG-----------------ATTGTCTG--TATTAG--TTTACATcagagatgctcg--- i danRer6.Zv8_NA2724 n 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=26736.000000 s hg19.chrUn_gl000223 43595 48 + 180455 ACCTGGACAT---AGATTGCTGG----AA--TGA---CCAAATGACTGCAGAGGTCTCAA s rheMac2.chr11 181111 40 - 134511895 ACCTGGACAT---AGACTGCTGG-----------------AATGACTGAGGTGGTCTCAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208608 48 - 136387465 ACCTGGACAT---AGATTGCTGG----AA--TGA---CCAAATGACTGCGAAGGTCTCAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170835 48 - 135371336 ACCTGGACAT---AGATTGCTGG----AA--TGA---CCAAATGACTGCGGAGGTCTCAA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 1054 46 + 26550 A-CTAAAAGT---ATCCTGCTGG----AA--TGG---TCCATTG-CTTAAGAGATTTCAA i otoGar1.scaffold_101698.1-26550 C 0 I 1188 s tupBel1.scaffold_132008.1-22537 16472 50 + 22537 TCCCAGTCGA---GTGTTTCTAG----AA--TTAATGACAAATGACTGAGG-GGCCAGAA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_134021 685 41 - 1769 atatgtatgt---atatTCTTGG----AA--TGA---AGAACCTACAT-------CTCAA i dipOrd1.scaffold_134021 I 116 C 0 s cavPor3.scaffold_248 209291 50 + 667635 ACCTGGACAT---ATACTGATGGAT--AA--TGA---TTAAATCACCTAGGAGGCCTCAA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51555 51 + 100761 ACCTGAATGC---GTACTGCCACAC-AAA--CAA---CCAAATGACTGAGGAAGTCTCAA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654568 48 + 1032594 GCATATACAT---ATATTGCTGGAATAAA--TGA---CCAAATGCCCGAGGAGGTC---- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950890 46 - 76506943 ATCTGGGCAC---ATA---CTGGAGTAAA--TGA---CCAAATGACTG---AGATCTTGA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173695 49 + 42029645 ACCTGATCAT---ATATTGCTGGGGTAAG--TGA---CCAAATGAGAG---ACGCCTCAG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68670 49 - 81011 ACCTGAGCAT---ATACTGCTGGAATAAA--CGG---CCAAATGAGGG---AAGCCTCGG i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130718 48 - 94057673 CCCTG-GCAC---CAACTGCTGGAATGAA--TGA---CCAGATGGCTG---AGGTCTCAA i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90965 33 - 3408981 ATCTAGATTT---ATATTGCTAG----AA--TAA---AAAAA---------------AAA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3702 46 + 3923 ACCTAGACTTA--ATATTGCTGA----AA--TAA---TCAAATCACTG---AGGACTGAC i choHof1.scaffold_224036 C 0 C 0 s danRer6.Zv8_NA2724 84811 43 - 115070 ----------accctgttgccgg----agctcta---ccttcctacagagttcagctcca i danRer6.Zv8_NA2724 C 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=177755.000000 s hg19.chrUn_gl000223 43643 80 + 180455 ATGCAGATTCCA----AATGCC-----TACTGCTG-----TAGATT-TTGC---T--------AGAAA--GTTACTTTT-GATAAATA-----CGGCATTCTGTGGGTGCATTT s rheMac2.chr11 181151 79 - 134511895 ATGTAGATTCCA----AATGCC------ACTGCTG-----TAGATT-TTGC---T--------AGAAA--ATTACTTTT-GATAAATC-----TGGCATTCTGTGGGTGCATTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208656 80 - 136387465 ATGTAGATTCCA----AATGCC-----TACTGCTG-----TAGATT-TTGC---T--------AGAAA--GTTACTTTT-GATAAATA-----TGGCATTCTGTGGGTGCATTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170883 80 - 135371336 ATGCAGATTCCA----AATGCC-----TACTGCTG-----TAGATT-TTGC---T--------AGAAA--GTTACTTTT-GATAAATA-----CGGCATTCTGTGGGTGCATTT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 45665 85 - 48060 GTGTAGAACTGA----AATGCC-----GATTACTT-----TATATT-TTGC---TGTT---TAATAAG--GTTATCATTAAATAAATT-----TAGCATTCT-TGAGTGCATTT i otoGar1.scaffold_81811.1-48060 I 1091 C 0 s tarSyr1.scaffold_155717 0 71 + 5780 ------------------TACC-----TATTGCTC-----CTTATT-CTGCAGTT--------AAAAAATGTTGATGTT-GATAAATC-----TGGCACTCTTTGGGTGCATTT i tarSyr1.scaffold_155717 N 0 C 0 s tupBel1.scaffold_132008.1-22537 16522 72 + 22537 GTGTAGATTCCA----AATATT-----TATTGACC-----T-GATT-TTGC---T---------------ATTA--TTT-TATGAATC-----TGGAGTTCTTTGGGTTTGTTT i tupBel1.scaffold_132008.1-22537 C 0 C 0 s dipOrd1.scaffold_134021 726 87 - 1769 GGGTAGATCCCA----GAGGCCACTGTTGCTGTTG-----TATGTT-CTGC---TATT---CAATAAA--GGTATTGTTAGATAAATC-----TGGTATTCAGCGA----ACTC i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209341 84 + 667635 GTATGTATCCAA----------ATGTTTGCAGATC-----TATG-T-CTGC---TACT---CAATAAA--GATACTGTTACATAAAGC-----TGATATTCTTCCAATTTATTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51606 79 + 100761 GGGTAGATCCCA----AAGGCC-----TAGAGGTC-----TATACT-CTGT---TGTTTA-TAATAAA--GGCTTTGCTAGATAAATTATACATGGTATT-------------- i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654616 77 + 1032594 GTGTAAATTCCA----AATACT-----TATTGATT-----TACATT-CTAT---T------TAATAAA--CGTTTTATTGGCTAAACC-----TGGCATCTTTGGG------TT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29950936 86 - 76506943 GTGTAGAGTTCA----AATATC-----TATGGATG-----TATACT-TTGC---TATG---TAATGCA--GATATTGGTAGATATGTC-----TGGTATTCTTTGGGTTCATTT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173744 86 + 42029645 GTGCAGATTCCA----AATGCT-----CGCTGATC-----TGTATT-CTGC---TGTT---GGGTAAG--GGCGTTGCTGGATAAACT-----GGATACTCTTTGCGTTTATTT i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68719 85 - 81011 ATGTAGATTCCA----GATGCC-----CACTGATC-----TACATT-CTTC---TATT----GGTACA--GGTATTGCTGGATAAATT-----GGATATTCTTTGGGTTTATTT i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130766 86 - 94057673 GTGTAGATTCCA----AATGCC-----TATTGATC-----CACATT-TTGC---TATT---TAACGCA--GACATTGTGAGATAAATC-----TGGTATTCTCTGGGTTCACTT i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 90998 87 - 3408981 AAACAGATCTCAAAGTAATGCC-----TATTGATC-----TATATT-CTAT---T------TAATAAA--GGTACTGTTAGATAAATG-----TGGTATTCTTTGGGTCCGTTT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_224036 3748 84 + 3923 GTGTAGATTCCA----AATGCC-----TACTGATC-----CATTCTGCTAT---T------AAACAAA--AGGCATGTTAGATAAATC-----TGGTTTTATTTAGGTTCATTT i choHof1.scaffold_224036 C 0 C 0 s danRer6.Zv8_NA2724 84854 70 - 115070 --------------------------accctgatcaaacacacatc-caat---taattaggaactga--actgctctt-gataatta-----cag------gcaggtgtgttt i danRer6.Zv8_NA2724 C 0 n 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=74499.000000 s hg19.chrUn_gl000223 43723 62 + 180455 TATGTCAACAT-TCTAAAAGTGAT---GTTCCC----GAAACCAAAG-TATCACAAATATA----TGGACCCAT--A s rheMac2.chr11 181230 62 - 134511895 TATGTCAACAT-TCTAAAAGAGAT---GTTCCT----GAAACCAAAG-TATCACAAATATA----TGGACCCAT--A i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208736 62 - 136387465 TATGTCAACAC-TCTAAAAGTGAT---GTTCCT----GAAACCAAAG-TATCACAAATATA----TGGACCCAT--A i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 170963 62 - 135371336 TATGTCAACAT-TCTAAAAGTGAT---GTTCCT----GAAACCAAAG-TGTCACAAATATA----TGGACCCAT--A i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 45750 54 - 48060 CGTCTTTGAGTGTTTACAAGTGAT---TTTCTT----AAAAGCAGAG-TACC-------------TGGTTCCAT--A i otoGar1.scaffold_81811.1-48060 C 0 C 0 s tarSyr1.scaffold_155717 71 62 + 5780 CATTTCAGGGT-TCTATGAATGAT---GTTCTT----GAAACCAAAA-TATTAGGACTATG----TAGATTCAT--A i tarSyr1.scaffold_155717 C 0 C 0 s tupBel1.scaffold_132008.1-22537 16594 40 + 22537 CATGTAGAGAA-TCTAAAAGTATT---CTTTTG----AAAAAAAAAA-T---------------------------- i tupBel1.scaffold_132008.1-22537 C 0 I 1551 s dipOrd1.scaffold_134021 813 47 - 1769 CATCTC-------CCA-GAGTTAT---AT----------AAGTGACG---TTTTGAAATCA----GGAACTTTC--A i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209425 59 + 667635 CATTTCATGAT-TCTA-AAGTATT---ATTCTT----GAAATCAAAT---TTTTAAAAACA----TAGATTCAC--A i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51685 64 + 100761 CATCTCAGGTT-TCTACAGGTAAC---ATTCTT----CAAATCAACA---TCAGGAACCTATGGGGGGATCCAC--A i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654693 62 + 1032594 AATCTCAAGTT-TCTACAAAAGAT---GCTCCT----GAAGACAAAGT-ATCAGGAACACA----CAGAGCTGC--A i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29951022 71 - 76506943 CATCTCAGGGT-TATACATGTGATCAAAATGTCAAAGGAAATCAAAA-TATCAGGAATATA----TAGACCCATACA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173830 63 + 42029645 CACCTCAGGCT-C-TACAGGACAT---GATCTT----GAAATCAGAA-TATCCGGGACATA----TGGATCCATAGA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68804 62 - 81011 CACCTCAGGTT-C-TACAGGTGAT---GATCTT----GAGATCAAAA-TACCCAGAACAT-----TGGATCCATACA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130852 63 - 94057673 CATCTCAGCAT-T-GACAAGTGAT---GTTCCC----GAAACCAAAA-TACCAGGAACACA----TGGATCCATACA i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 91085 39 - 3408981 CATTTCAGGGT-TCTATAAGTGA------TCTT----GAAACCAAAA-TAT-------------------------- i loxAfr3.scaffold_113 C 0 I 971 s choHof1.scaffold_224036 3832 62 + 3923 CATCTTAGAAT-TCTGCAAGTGAC---GTTCTT----GAAACCAAAA-TATCAGGAATGTG----TTTATCCATA-- i choHof1.scaffold_224036 C 0 N 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.Zv8_NA2724 84924 0 - 115070 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=25194.000000 s hg19.chrUn_gl000223 43785 20 + 180455 G--GTAATGATGTCAGA----------TCCTG s equCab2.chr8 64130915 32 - 94057673 GACATAACTATGTCAGAAGATATCAAAGCCCA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 68866 28 - 81011 G--AGAATGGTGTCACA--TTACAAAAGCCCA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3173893 28 + 42029645 G--GTAACTGTATCTGA--TTACCAAATCCCA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29951093 30 - 76506943 G--ATAATGGTGTCTGAAAATATCAAAGCCCA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 654755 17 + 1032594 G--GTAACTGT---CAG----------ATCCC i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_137548 51749 20 + 100761 G--ATAACTGTGGCAGA----------GTCCA i speTri1.scaffold_137548 C 0 C 0 s cavPor3.scaffold_248 209484 20 + 667635 G--ATAACCATATCAAG----------GCCTC i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_134021 860 7 - 1769 G--A-----------------------GCCTC i dipOrd1.scaffold_134021 C 0 C 0 s tarSyr1.scaffold_155717 133 20 + 5780 G--ATAATTTTGTCAGA----------GCCCA i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_81811.1-48060 45804 20 - 48060 G--ATAACTGTGTCAGA----------GTCCA i otoGar1.scaffold_81811.1-48060 C 0 C 0 s panTro2.chr12 171025 20 - 135371336 G--ATAATGATGTCAGA----------TCCTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 208798 20 - 136387465 G--ATAATGATGTCAGA----------TCCTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181292 20 - 134511895 G--ATAATGATGCCAGA----------TCCTG i rheMac2.chr11 C 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e tupBel1.scaffold_132008.1-22537 16634 1551 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 91124 971 - 3408981 I e danRer6.Zv8_NA2724 84924 0 - 115070 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=94813.000000 s hg19.chrUn_gl000223 43805 24 + 180455 C-------------AAGAAAAAGTCACACAG-AAGGCA s rheMac2.chr11 181312 24 - 134511895 C-------------AAGGAAAAGCTACACAG-AAGGCA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208818 24 - 136387465 C-------------AAGAAAAAGTCACACAG-AACGCA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 171045 24 - 135371336 C-------------AAGAAAAAGTCACACAG-AAGGCA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_81811.1-48060 45824 24 - 48060 C-------------AAAGAAAAACCAAACAC-AATGCA i otoGar1.scaffold_81811.1-48060 C 0 C 0 s tarSyr1.scaffold_155717 153 22 + 5780 C-------------AAAGAAAAGC--CAAAG-AAGGCA i tarSyr1.scaffold_155717 C 0 C 0 s dipOrd1.scaffold_134021 867 24 - 1769 T-------------AAAGAAAAGTTGAACAG-AACATC i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209504 23 + 667635 --------------AAAGAAAACCAGAGCAG-AAAGGA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51769 37 + 100761 CCCCAAGAAAAAAAAAAAAAAAGCCAAACAG-AGGACA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 654772 20 + 1032594 --------------AAAGAGA---CGAACAG-AAGACA i oryCun2.chrUn0106 C 0 I 573 s bosTau4.chr17 29951123 24 - 76506943 C-------------AAAGAAAAACTGAACAC-AAGGCA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3173921 24 + 42029645 C-------------AAAGAAACACTGAACAG-AAGGCA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 68894 25 - 81011 C-------------AAAGAAACACTGAATAGAAAGGCA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64130947 24 - 94057673 C-------------AGAGAAAAGCTGAACGG-AAGGCA i equCab2.chr8 C 0 C 0 s choHof1.scaffold_59997 5446 24 + 12755 C-------------AAAGCAAGGATGAACAA-AAGGCA i choHof1.scaffold_59997 N 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e tupBel1.scaffold_132008.1-22537 16634 1551 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 91124 971 - 3408981 I e danRer6.Zv8_NA2724 84924 0 - 115070 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=287956.000000 s hg19.chrUn_gl000223 43829 130 + 180455 ATCCTGATACAGGTCT-CAAAATT--C--AGTCTG-GACCT-TAAGGAA-------------------AACCCACTACTTAGTAAAAGGAAAACAATGTCAATTGTCCT-TTGTAGAACTGTGCACAATTCCAGGTCAGTGGGAAAATCCAGGCAGT s choHof1.scaffold_59997 5470 126 + 12755 CCCTCGGGACTGGTCT-CAAAATT--C--AGACGGTGGCCT-CCAGAAA--------------------ATGCATTACTTGATAAAATAAATACAATGTAAACTATCCT-CTCTAGAACTGTGCACAATTGCAGGTTA----GGGAACCTGCATTGT i choHof1.scaffold_59997 C 0 C 0 s equCab2.chr8 64130971 121 - 94057673 CTCCTGGGACAGGCCC-CAAAATT--C--AGACTG-CACCT-CCAAAAA--------------------ACCCACTGCTTAGTCAAA-GAACACAGCAGAAACTGTCC--CTGTTGAACTGT------CTCCGGGAGAGTGGAAGGCCCTGGGTACT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 68919 114 - 81011 CTC-----------CC-CAAGACTCAC--AGACTT-GATCT-CCAAATG--------------------ATCCATTACTTAGTAAAAGGAATACAGTA-GAACTGTCCT-TGGCAGAACGGT-----CTTCCAGGACAGTGGGGGAACCTGGGTGGT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3173945 103 + 42029645 CTCCTGGGACAGGTCC-CAAAATT--C--AGACT----------------------------------------TTACTTAGTAAAAGGAATACAATAGGAAGTGTCCT-CTACAGCACTGT------TTCCAGGCCAGTGGGGGAACC-AGGTGG- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29951147 125 - 76506943 ATCCTGGTATAGGTCT-CAGAATTCAT--AGATAG-GACCT-CCAGAAG--------------------ATCCAGTACTTAGTGTAAGGAATATAATAGAAAGTATGCC-CTGCAGGATTGT------TTCCACACCAGGGGAGGAACCTGGGTGGT i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 655365 126 + 1032594 CTTCTAACATAAGTGT-CAAATTT--CACATAAAA-A-------AAACA-------------------ACCCTATAACTTAGTAAAACGAATGCAAAGCAAACTCTCCT-TTGTAGAACTGTGAACAATTCCAAGTCAGTTGAGGAACCCAGGTGGT i oryCun2.chrUn0106 I 573 C 0 s speTri1.scaffold_137548 51806 131 + 100761 TACCTAGGATAGGTTT-CAAAATA--CACAAACTG-GACCT-CCAAAGA-------------------GCCCCGTTCCTTAGCAAAAAGAGTACAGTATAAATCATCTT-TTGTAGAACTGCATACAATTTGAGATCTGTGGAAGAA-ACTGGTGGC i speTri1.scaffold_137548 C 0 C 0 s cavPor3.scaffold_248 209527 115 + 667635 CATTAGAGACAGGTCT-CAAACTC--CAGAGACTG-GACCT-CCAAAAA-------------------TCCCCGTAACTTAGTAAATGGATTACAATGGAACCATCCTTGGTGTACAATT------------------CCAGGGGAAACCTAGTGGG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_134021 891 125 - 1769 CTCTTAGGTCAGATATAAAAAATC--CACAATCCA-GACCT-ACAAAAG-------------------TCCAC-TACTTAAATAAAGGGAATACAGTGAAAATAGCTCT-TTGTACAAGTGTACTTAAGTC-AGGCCACTGGGGGAA------TGGG i dipOrd1.scaffold_134021 C 0 C 0 s tarSyr1.scaffold_155717 175 131 + 5780 CTCTTGGTATAGGTAT-CAAAATT--C--AATCTG-AACCTCCAAAGAA-------------------AACCCACTACTTAGTAAAAGAAATACAACGTAAATTGTCCT-TTGTAGAACTGTGCACAATTCCAGGTCATTAAGACAATCTAGATGGT i tarSyr1.scaffold_155717 C 0 I 2 s otoGar1.scaffold_81811.1-48060 45848 144 - 48060 CTCCTGATATAGGTCT-TAAAATT--C--AGTCCA-------CAAGAAACAAACAAACACAAAACCCCAAACCATAAATTAGTAAAAGGAATGCAATGTAAATTTTCCT-TTGTAGAATAAAGCACAATTCCAGGATGGTGGAAGAATATGGACAGT i otoGar1.scaffold_81811.1-48060 C 0 I 2 s panTro2.chr12 171069 130 - 135371336 ATCCTGGTACAGGTCT-CAAAATT--C--AGTCTG-GACCT-TAAGGAA-------------------AACCCACTACTTAGTAAAAGGAAAACAATGTAAATTGTCCT-TTGTAGAACTGTGCACAATTCCAGGTCAGTGGGAAAATCCAGGCAGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 208842 130 - 136387465 ATCCTGGTACAGGTCT-CAAAATT--C--AGTCTG-GACCT-TAAGGAA-------------------AACCCACTACTTAGTAAGAGGAAAACAATGTAAACTGTCCT-TTGTAGAACTGTGCACAATTCCAAGTCAGTGGGAAAATCCAGGCGGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181336 130 - 134511895 ATCCTGGTACAGGCCT-CAAAATT--C--AGTCTG-GACCT-TAAGGAA-------------------AACCCACTACTTAGTAAAAGGAAAACAATGTAAATTATCCT-TTGTAGAACTGTGCGCAATTCCAGGTCAGTGGGAAAATCTGGGCAGT i rheMac2.chr11 C 0 C 0 s danRer6.chr22 2107061 110 + 41415389 ------------GTTT-ATGAAGT--A--AATCTA-AAACA-ATAAGAA---------------------------AGCTGAAGAGGGGTAAATAATGTCCCCTACCTG-ATGCTTTACTGTACACACTTAACTGGCGCGAAAATAATCCAGTCTCC i danRer6.chr22 n 0 C 0 e micMur1.scaffold_51584 2747 1586 - 5263 M e tupBel1.scaffold_132008.1-22537 16634 1551 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 91124 971 - 3408981 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=-19505.000000 s hg19.chrUn_gl000223 43959 30 + 180455 AAGAGAATA--AGAAAAGAT-GATGCTTCCTG-T s otoGar1.scaffold_81811.1-48060 45994 30 - 48060 AATAGAATA--AGAAAAGCT-GATGTTTCCTG-T i otoGar1.scaffold_81811.1-48060 I 2 C 0 s micMur1.scaffold_51584 4395 30 - 5263 AAGAGGATA--AGAAAAGCT-AACATTTCCTC-T i micMur1.scaffold_51584 M 1586 I 6 s tarSyr1.scaffold_155717 308 30 + 5780 AAGAGACTA--AGACAAGGC-AATGTTTCCTA-T i tarSyr1.scaffold_155717 I 2 C 0 s rheMac2.chr11 181466 30 - 134511895 AAGAAAACA--AGAAAAGGG-GATGCTTCCTG-T i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 208972 30 - 136387465 AAGAGAACA--AGAAAAGGT-GATGCTTCCTG-T i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 171199 30 - 135371336 AAGAGAATA--AGAAAAGAT-GATGCTTCCTG-T i panTro2.chr12 C 0 C 0 s dipOrd1.scaffold_134021 1016 30 - 1769 AAAATGATA--AGGAAAGGA-GAAGTCTTCTC-C i dipOrd1.scaffold_134021 C 0 C 0 s cavPor3.scaffold_248 209642 24 + 667635 GAA-----A--AGGAAAAGA--ATGCTTCCTC-T i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51937 30 + 100761 CAAATAGGA--TAACAAGGA--ATGCTGTCCCAT i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 655491 29 + 1032594 AAAATAGGATCAGAAAAGTG--ATGTTTTA---T i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29951272 25 - 76506943 GAAAGAGGA--AAGGGAAAGAGATGCT------- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3174048 25 + 42029645 ---AGAGGA--GAGAGGGGACATGCCTTCC---- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 69033 21 - 81011 GAAAGAGGA--GGGAGGGGA-------TCC---- i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64131092 26 - 94057673 G--AGAGGA--AAGCAAAGGTGGGGACTCC---- i equCab2.chr8 C 0 C 0 s choHof1.scaffold_59997 5596 30 + 12755 GAAAGAGTA--AGAAAAGGT-GATAGTTCCTG-T i choHof1.scaffold_59997 C 0 C 0 s danRer6.chr22 2107171 22 + 41415389 ---TGGGGA--AAGACACAA-GATGGCG------ i danRer6.chr22 C 0 n 0 e tupBel1.scaffold_132008.1-22537 16634 1551 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 91124 971 - 3408981 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=-72171.000000 s hg19.chrUn_gl000223 43989 50 + 180455 AT---TTG--GCCTCCTTTAGTA-TGC-------------------------------------------TATCTCAATG-------T-ACCTTATTGT-------------------------------------GCTCCATA s otoGar1.scaffold_81811.1-48060 46024 45 - 48060 GT---TTG--GCC----TTAGTA-TTC-------------------------------------------TATTTC-TAG-------T-GACTTCTTGT-------------------------------------GCTCCATG i otoGar1.scaffold_81811.1-48060 C 0 C 0 s micMur1.scaffold_51584 4431 50 - 5263 AT---TTG--GCCTCCTTTAGTA-TTG-------------------------------------------TCTCTCATTG-------T-GACTTACTGT-------------------------------------GCTCCACA i micMur1.scaffold_51584 I 6 C 0 s tarSyr1.scaffold_155717 338 46 + 5780 AT---CTG--GCTTCCTTTAGTA-TTC-------------------------------------------TATCTCAAGG-------TAAACTTATTGT-------------------------------------G-----TG i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 181496 50 - 134511895 AT---TTG--GCCTCCCTTAGTA-TGC-------------------------------------------TATCTCAAGG-------T-ACCTTATTGT-------------------------------------GCTCCATA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 209002 50 - 136387465 AT---TTG--GCCTCCTTTAGTA-TGC-------------------------------------------TATCTCAATG-------T-ACCTTATTGT-------------------------------------GCTCCATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 171229 50 - 135371336 AT---TTG--GCCTCCTTTAGTA-TGC-------------------------------------------TATCCCAATG-------T-ACCTTATTGT-------------------------------------GCTCCATA i panTro2.chr12 C 0 C 0 s dipOrd1.scaffold_134021 1046 137 - 1769 ACGTA-----GCCTCTGTTAGTA-TTCTATCTCAAGGTAAAGATAGACTCCTGGGAAGTGGCGCTGTAGCTCAAGTGGTAGAGCGCTC-GCCTTGAGCTGAAGAGCTGAAGGACAGCACCCAGGCCCAGAGTTCAAGCCCCACG i dipOrd1.scaffold_134021 C 0 N 0 s cavPor3.scaffold_248 209666 39 + 667635 AT---------------TTAGCA-TTC--------------------------------------------CACATGGTA-------T-GCCTTGTGGT-------------------------------------GCTCTATG i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 51967 40 + 100761 AT---------------TAAGTA-TTC-------------------------------------------TCCCTCAGTA-------T-TGCTTAATAT-------------------------------------GCTCCATG i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 655520 50 + 1032594 AT---------------TTGGCA-TCC-------------------------------------------TTCAACGTTT-------T-ATCTCAATGTAACTCACTGT---------------------------GCTCCATG i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64131118 49 - 94057673 -----TCTCTGTCTCCTTGAGTG-CTC-------------------------------------------TCCCTCAGCG-------C-ACCCCACGG--------------------------------------GCTCCAGG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3174073 48 + 42029645 -----ACCTGGTCTACTT--ATA-CAT-------------------------------------------CCAATCAACA-------C-AACCTCCAGT-------------------------------------GCTCCAGG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 2909 47 - 4472 -----ATTTTGTCTCAAC--A-A-TTC-------------------------------------------TATCCCAGTG-------T-GATGTATTGT-------------------------------------GCTCCACA i myoLuc1.scaffold_117471 N 0 C 0 s felCat3.scaffold_141210 69054 42 - 81011 -----------TCTCCCT--ATG-CAT-------------------------------------------TCTACTAACA-------T-CAGCTACTAT-------------------------------------GCTCCCTG i felCat3.scaffold_141210 C 0 C 0 s bosTau4.chr17 29951297 26 - 76506943 ------------------------CCT-------------------------------------------CCTCTCAAT--------------TATTGA-------------------------------------GCTTCACA i bosTau4.chr17 C 0 C 0 s tupBel1.scaffold_132008.1-22537 18185 46 + 22537 ----------GCACCCTTTAGTGTTTT-------------------------------------------TATCCCAATG-------T-ATCTTACTGT-------------------------------------GTTACACA i tupBel1.scaffold_132008.1-22537 I 1551 C 0 s choHof1.scaffold_59997 5626 46 + 12755 ----ATTG--GCCTCATTTAGTT-TTC-------------------------------------------TAACTCTGTG-------T-AACTCAT----------------------------------------GTTTCATG i choHof1.scaffold_59997 C 0 C 0 e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 91124 971 - 3408981 I e danRer6.chr22 2107193 0 + 41415389 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=42796.000000 s hg19.chrUn_gl000223 44039 38 + 180455 AAATCACA-AATAAATCCAGTCT-AACTTTAAAAC----TTTCT s panTro2.chr12 171279 38 - 135371336 AAATCACA-AATAAATCCAGTCT-AACTTTAAAAC----TTTCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209052 38 - 136387465 AAATCAAA-AATAAATCCACTCT-AACTTTAAAAC----TTTCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181546 32 - 134511895 AAATCAAA-AATAAATCC-------ACTCTAAAAC----TTTCT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 384 33 + 5780 TACTCATA-AATAAACCCAGTCT-AACtttattat--------- i tarSyr1.scaffold_155717 C 0 I 427 s micMur1.scaffold_51584 4481 34 - 5263 AAATT-----ATAAATCCAGTCT-AACTTTAAAAC----TGTCT i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46069 38 - 48060 AAATCATA-AATAAATCCAGTCT-AACTTTAAAAC----TTCCt i otoGar1.scaffold_81811.1-48060 C 0 C 0 s tupBel1.scaffold_132008.1-22537 18231 32 + 22537 GTCCCATA-AATAAACCCAG-------TATAAAAC----TTTCT i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 209705 34 + 667635 AAACCACA-GGGACAAATGGTCT-ACAACCA--------TCTTT i cavPor3.scaffold_248 C 0 I 1 s speTri1.scaffold_137548 52007 34 + 100761 AAATCACA-AGTAAAATTAGTTT-AACATCA--------TTATT i speTri1.scaffold_137548 C 0 I 308 s oryCun2.chrUn0106 655570 30 + 1032594 -----ACATAATAGTCTGACTTT-AAAATGG--------TCTTT i oryCun2.chrUn0106 C 0 I 11 s bosTau4.chr17 29951323 42 - 76506943 AAACCATA-GGTAAATCCAGCCT-AACTTTAAAATTGGCTTTCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64131167 42 - 94057673 AAACTGTA-TGTAAATCCGGCCT-AACTTTAAAACTAGTTTTCT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 69096 42 - 81011 AAGCTGCA-AGTAAATCCCTCTT-AGCATCAAAACCAGCTTTCT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174121 39 + 42029645 AGGCTGCA-CATAAATCCTTC---AAC-TTAAAACCAGTTTTCT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 2956 35 - 4472 AAACTGTA-AGTAAGCCACTC--------TAAAACTGCCTTTCT i myoLuc1.scaffold_117471 C 0 C 0 s choHof1.scaffold_59997 5672 33 + 12755 GAATCCTA-AATAACTCAAGTCTAAACATTAAAA---------- i choHof1.scaffold_59997 C 0 I 11 e pteVam1.scaffold_7037 55585 14498 + 84018 I e loxAfr3.scaffold_113 91124 971 - 3408981 I e danRer6.chr22 2107193 0 + 41415389 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=42170.000000 s hg19.chrUn_gl000223 44077 15 + 180455 TCTT-------------------------GATGTAGAATT s panTro2.chr12 171317 15 - 135371336 TCTT-------------------------GATGTAGAATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209090 15 - 136387465 TCTT-------------------------GATGTAGAATT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181578 15 - 134511895 TCTT-------------------------GATGTAGAATC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 844 15 + 5780 TCTT-------------------------GATGTGGGGTT i tarSyr1.scaffold_155717 I 427 C 0 s micMur1.scaffold_51584 4515 15 - 5263 TCTT-------------------------GATATGTGGTC i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46107 40 - 48060 ttcttcttcttcttttttttttttttttggagacagagcc i otoGar1.scaffold_81811.1-48060 C 0 I 223 s tupBel1.scaffold_132008.1-22537 18263 8 + 22537 TCTT-------------------------GAAT------- i tupBel1.scaffold_132008.1-22537 C 0 C 0 s cavPor3.scaffold_248 209740 15 + 667635 TTTC-------------------------AGTGTGGAGTC i cavPor3.scaffold_248 I 1 C 0 s speTri1.scaffold_137548 52349 15 + 100761 TCAT-------------------------GAAGTGGGATT i speTri1.scaffold_137548 I 308 C 0 s bosTau4.chr17 29951365 15 - 76506943 TCTT-------------------------GATGCAGCATT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64131209 15 - 94057673 TCTT-------------------------GATGTGGGGTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 69138 15 - 81011 TCTT-------------------------GATGTGGGATT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174160 15 + 42029645 TCTT-------------------------GGTGTGGGATT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 2991 1 - 4472 G--------------------------------------- i myoLuc1.scaffold_117471 C 0 I 193 s loxAfr3.scaffold_113 92095 15 - 3408981 TCTT-------------------------GATGGGGAGTT i loxAfr3.scaffold_113 I 971 C 0 s choHof1.scaffold_59997 5716 15 + 12755 TCTT-------------------------GATGTGGGGTT i choHof1.scaffold_59997 I 11 C 0 e oryCun2.chrUn0106 655600 11 + 1032594 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr22 2107193 0 + 41415389 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=337567.000000 s hg19.chrUn_gl000223 44092 119 + 180455 TGTGGTA-GGAAACAATAAGGGGCAATGCAGAGACACA-----GATTTGTGGTTTA-CAAGGTAATTTCAAAAA-CACAT--T----------------AAAAA-------------------------------------------ATCTC--TAATTGCAGAATCAGAGCTCTC--ATGACACTTTAG----AA s panTro2.chr12 171332 119 - 135371336 TGTGGTA-GGAAACAATAAGGGGCAATGCAGAGACACA-----GATTTGTGGTTTA-CAAGGTAATTTCAAAAA-CACAT--T----------------AAAAA-------------------------------------------ATCTC--TAATTGCAGAATCAGAGCTCTC--ATGACACTTTAG----AA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209105 116 - 136387465 T---GTA-GGAACCAATAAGGGGCAATGCAGAGACACA-----GATTTGTGGTTTA-CGAGGTAATTTCAAAAA-CACAC--T----------------AAAAA-------------------------------------------ATCTC--TAATTGCAGAATCAGAGCTCTC--ATGACACTTTAG----AA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181593 119 - 134511895 TGTGGTA-GGAACCAATAAGGGACAATGCAGAGACATA-----ATTTTGTGGTTTA-CAAAGTAATTTCAAAAA-CACAC--T----------------AAAAA-------------------------------------------ATCTC--TAATTTCAGAATCAGAGCTCTC--ATGACACTTTAG----AA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 859 112 + 5780 TGTAGTA-AGAATCAATAAGGGGAAATGTAAAGACATG-----TTTTTGTGGTATA-CTAACATATTTCCGAAA-AAGAC--A----------------GAAAA-------------------------------------------AAATC--TAATTCCAGAATCAGAGCTCTC---TCACA----------AC i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 4530 126 - 5263 TGTGGTA-GGACTCAATGAGGGGAAATGTGGAGGCCTG-----TGTTTCTGGTTTACCAAGGTAATTTCCAAAA--ATACA-T----------------TAAAA-------------------------------------------ACCTC--TAGTTTCAGAATCAGAGCTCTCTCATGACACTTCAGGGCAAT i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46370 119 - 48060 TGTGGTA-GGAATC-ATGAAGGGAAATGTGGAGACAGG-----CTTTTGAGGTTAACCCAGGGCATTTCCAAAA-CAGACA-C----------------TAAAA-------------------------------------------ATCTCAGAATTTTCAGAATCAGAGTTTTCTCATAA---------GCAAT i otoGar1.scaffold_81811.1-48060 I 223 C 0 s tupBel1.scaffold_132008.1-22537 18271 94 + 22537 GGGGGTG-GAAATCAATGAGGGGAAAGATGGAAAAACA-----TTTCTGTGGTTTACCAAGGTAATTTCAAAAA-CAGACACT----------------AAAGA-------------------------------------------ATGTC--TA-TTGCAG--------------------------------- i tupBel1.scaffold_132008.1-22537 C 0 I 150 s cavPor3.scaffold_248 209755 108 + 667635 TGTGGTA-GAAACCCATGA-GAGAAACAGACACA---------TTCCTATAGTTTATTAAGATTATTTTAAAAA-CAAACA-C----------------CAAAG-------------------------------------------GTTTA--TATTTTTAGAATCTGAGCTC----------CTTCAG----AA i cavPor3.scaffold_248 C 0 I 36 s speTri1.scaffold_137548 52364 101 + 100761 TATGATAGGAAATCAATGA-GGGAAGTGTAGAAAGATGT----TTTTTGTAGTT-----AAGGCATTT--AAAA-CATACA-C----------------TAAAA-------------------------------------------ATATC--TAATTCCAGAATCAGAGCTCCC-------------------- i speTri1.scaffold_137548 C 0 I 184 s oryCun2.chrUn0106 655611 121 + 1032594 TCTGGTA-GGAATCAGTAAGGGGAAATGTGAAGACATGT----TGTTTGTGGCTTTTAAGGTTGATATAAAAAA-CAGACA-C----------------TAAAA-------------------------------------------ATCTA--TAATTTCAAATTTAGAACTCTT---TTAGACTTCAG----AA i oryCun2.chrUn0106 I 11 I 4 s bosTau4.chr17 29951380 114 - 76506943 TGTAGT------------AGAATCAGTGAGGAGAAACATA---TTTTTGTGGTTTACCAAGGTGTCTTAAAAAT-GTAACA-C----------------TAAGA-------------------------------------------ATCTC--TAATTTCAGAATCAGAGGCCTCTTGTGGCCCTTCAG----AA i bosTau4.chr17 C 0 I 2 s canFam2.chr26 3174175 109 + 42029645 TGTGGTG-GGAACCAATGAGGGAAAACGAGGAGACACAGG---TTTTTGTGATTTACCGAGGTAATTTAA-----AAGACA-C----------------TAAAA-------------------------------------------ATACC--TAATTTCAGAATCAAAGCCCTCTCGT---------------- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 69153 126 - 81011 TGTGGT------------AGGGGAAATGTGGGGACTCGTGTTTTTTTTGTGGTTTACCAAGGTAATTTAAAACC-AAGGTA-CCTTTACCAAGGTAATTTGAAA-------------------------------------------ATATC--TAATTTCAGAATCAAAGACCCCTCTT-------CAG----AA i felCat3.scaffold_141210 C 0 I 1 s equCab2.chr8 64131224 123 - 94057673 TGTGGTA-GGAATCAAG-AGGGGAAATGTGGGGACACAT----TTTGGGGGATTTACCAAGGTAATTTAAAAAA-CGGACA-C----------------TAAAA-------------------------------------------ATCTC--TAATTTCAGAATCAGAGCCCTCTCATGACACTTCAG----AA i equCab2.chr8 C 0 I 2 s loxAfr3.scaffold_113 92110 157 - 3408981 TGTCATA-GGAATCAA----------TGTGGGGACGTG-----TTTTTGTGGTTTGCCAAAGTAATTTCAAAAAACTAACA-T----------------TAAGAATGTCTAACTTTCACTTAAAGCACAATAAAAATTATTAAAAGTATCTC--TGATTTCAGAATCAGAGTCCTCTTGTGACACTTTAC----AA i loxAfr3.scaffold_113 C 0 I 4 s choHof1.scaffold_59997 5731 124 + 12755 TGTGTTA-GGAAACAATAAGGGGAATTATGGGGATACA-----TTTTTGAAGCTTACCAATGTAAATTTCAAAAGTTGACA-T----------------TAAGA-------------------------------------------ATCTG--TAATCTCAGAATCAGAGCCCTCTACTGACACATCAG----AA i choHof1.scaffold_59997 C 0 I 3 e myoLuc1.scaffold_117471 2992 193 - 4472 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e danRer6.chr22 2107193 0 + 41415389 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=61902.000000 s hg19.chrUn_gl000223 44211 38 + 180455 GGTGAGTT-CTAGTGATTACTGCACAACGTATT------------------------------TGAACC s panTro2.chr12 171451 38 - 135371336 GGTGAGTT-CTAGTGATTACTGCACAACGTATT------------------------------TGAACC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209221 38 - 136387465 GGTGAATT-CTAGTGATTACTGCACAATGTATG------------------------------TGAACC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181712 38 - 134511895 GGTGAGTT-CTAGTGACTACTGCACAATGTATT------------------------------TGAACC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 971 38 + 5780 GGCAAGCT-CCAGTGGGTTGTACACAAAGCACA------------------------------TGAGTC i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 4656 38 - 5263 GGTGAGCT-CCAGTGGGTAGTGCACAATATATC------------------------------TGAGTC i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46489 38 - 48060 GGTGAGCT-TCAATGGGTAGCAAACAATATATT------------------------------TGAGTC i otoGar1.scaffold_81811.1-48060 C 0 C 0 s oryCun2.chrUn0106 655736 38 + 1032594 GAAGAGTT-CCAGTGAGTGCTAAACTGCATATA------------------------------TGGATG i oryCun2.chrUn0106 I 4 C 0 s bosTau4.chr17 29951496 38 - 76506943 CAAAATGC-CAGGTGAGTTCTACACCACACACT------------------------------TGGGAT i bosTau4.chr17 I 2 C 0 s canFam2.chr26 3174284 27 + 42029645 ------------GCGAGTTCTACACAACATGCC------------------------------TGAGCC i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 69280 38 - 81011 GAGAGTAC-CCAGTGAGTTCTACACAGCATACC------------------------------TGGGTC i felCat3.scaffold_141210 I 1 C 0 s equCab2.chr8 64131349 35 - 94057673 GAATGCTC-CCAGTGAGTCCTACA---CATGCC------------------------------TGGGTC i equCab2.chr8 I 2 C 0 s loxAfr3.scaffold_113 92271 39 - 3408981 GGAGAGCTACCAGTGAGTTCTACAAGAATCATC------------------------------TGGCTC i loxAfr3.scaffold_113 I 4 C 0 s choHof1.scaffold_59997 5858 32 + 12755 GCAGAGTTACCAGTGGGTGCGACA-----CACT--------------------------------GTGC i choHof1.scaffold_59997 I 3 C 0 s danRer6.chr4 56415180 68 + 71658100 GGTGTAAT-TGATTGGTTATTACACAAAGTTTTGCACAGCCACACAAACTACATATCATATGATAGGCC i danRer6.chr4 n 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52465 184 + 100761 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I e cavPor3.scaffold_248 209863 36 + 667635 I a score=279918.000000 s hg19.chrUn_gl000223 44249 156 + 180455 --TC--TGCATCAG--------TTTTTA----------ACTAGACCTCTG--CTGTCAGCATCAA----TCCT-CCCC----A----T-AACACCTGAC---ATTT---------AG--AA--A----------------AAAATGTTTGTTCTTGGG----C--AATCAATAGGCTAATGTTGAAGTTCCATTA-TCTAG---TGTAGG--AAGTATCAGGTTTAACTGCTTAATAG s panTro2.chr12 171489 156 - 135371336 --TC--TGCATCAG--------TTTTTA----------ACTAGACCTCTG--CTGTCAGCATCAA----TCCT-CCCC----A----T-AACACCTGAC---ATTT---------AG--AA--A----------------AAAATGTTTGTTCTTGGG----C--AATCAATAGGCTAATGTTGAAGTTCCATTA-TCTAG---TGTAGG--AAGTATCAGGTTTAACTGCTTAATAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209259 157 - 136387465 --TC--TGCATCAG--------TTGTTA----------ACTGGACCTCTG--CTGTCAGCATCAA----TCCT-CCCC----A----T-AACACCGGAC---GTTT---------AGA-AA--A----------------AAAATGTTTGTTCTTGGG----C--AATCAATAGGCTAATGTTGAAGTTCCATTA-TCTAG---TGTAGG--AAGTGTCAGGTTTAACTGCTTAATAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181750 159 - 134511895 --TC--TGCATCAG--------TTCTTA----------ACTAGACCTCTA--TTGTCAGCGTCAA----TCCT-CCCC----A----T-AACACCTGAT---GTTT---------AG---A--A----------------AAAATCTTTGTTCTTGGGCATTC--AATCAATAGGTTAATGTTGAAGTTCCGTTA-TCGAG---TGTAGG--AAGTATCAGGTTTAACTGCTTAACAG i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 1009 160 + 5780 --TC--CACATTAG---ACATTCTGATG----------ACTAGGCCTCTA--CTGTCAGCATCAGAATTTCAC-CTCT----T----T-GAAA------------T---------AA--AA--A----------------TAATCTTTTGCTCTCGAATATTC--AACTAATAGACAAGAGCTAAATGTCCATTA-GCTAG---TGAAGG--AAGTATTAGGATTAACTGCTTAACAG i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 4694 172 - 5263 --TC--CACAGAAG---ACATTCTCATA----------AACAGACCTCTG--TTGTCAGCATCAG----CCCA-CTCT----GTGAGT-AACACCTGAC---CCTG---------AGA-AATGA----------------TTTTTTTTTGCTCTTGGGGATTC--AATCAATAGGCTAGTGCTGAAGTTCCATTA-TCTGA---TGCAGG--AATTATTAGGTTTCACTGCTTAATAG i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46527 168 - 48060 --TC--CACATTAG---ATAGTCTCAAA----------AGTAGACCTTGG--TTGTCTGCATCAA----CCCA-CTGG----ATGAGT-AACACCTGA-----CTG---------AGA-AA--A----------------TAATTTTTTGCTCTTGGAGATTC--AATCAATAGGTTAGTGCTAAAGTTCCATTA-TCTAA---TGCAGG--AAGTACCTGGTTTAACTGTTTAATAG i otoGar1.scaffold_81811.1-48060 C 0 C 0 s cavPor3.scaffold_248 209899 167 + 667635 --TT--CACATGAG--------GTGTTAAATGATACGGACT---TCTCTG--TGGTCTGCATATG----CACA-CCCT----ACAATT-GCAACCTGAC--TGTT------------------A----------------CAGGTCCTTTTTTTTGGACACTG--AGTAAATATGCTAGTGCAGAGGTTCTACTG-TCTCC---TGAAGG--CTATATTAAGGTTAACTCATTAACAG i cavPor3.scaffold_248 I 36 C 0 s oryCun2.chrUn0106 655774 146 + 1032594 --CT--CAAACCAG--------TTGTTG------------------------------GCATCAG---------CCCT----ATGAGTAACCATCTGATGATGCTC---------AGG-AAAAA----------------TAGTTTTTTGCTTTTGAATAGTC--AACCAATAATCTAGGGCTGAGGTTCCATTA-TACAG---TAAAAGAACTACAT-----TTAACTGCTTAATAG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29951534 171 - 76506943 --GTGGAACATCAG---GTATTTTGATA---------AACAAAAGCCCTG--CTGCCAGCATCAG----CCCT-GGCACGGGATGACT-GACATCAGAC---CCTT---------AG---G--A----------------ATCACATTTGCCCTTGGG-ATTC--AATCAAAAGGCCAGTG---AAGTTTCATCA-TCTCA---TAAAGG--AAGTTCTAAGATTAACTGCTTAATAG i bosTau4.chr17 C 0 I 1 s canFam2.chr26 3174311 153 + 42029645 --TC--CGCATAAG-----------------------------------G--CTGTCAACATCAG----CCCT-CCCC----GT--CT-GATAACTGGC---TCTTTGGGGGGAGGG---G--G----------------GAAAACCCTGCTCTTGGGTGTTC--AACCAGTGGGGTAGTGCTGACATTCTAATC-TTTAG---TGAGAC--AAGTACTGGGTTTAACTGCTTAACAG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 69318 169 - 81011 --TC--CACGTAAG---GTATTTTGATA---------AACAAGGCCTCTG--TTGCCAGCGTTAG----CACT-CCCT----ATGACT-GACACATGAC---CCCT---------AA---G--G----------------AAAAAATCTGCTCTTCGGTATTC--AACCAGTAGGCTAAAGCCAAAATTCGGTTA-TCTAG---AGAGTA--AACTATTGGGTTTAACTCCTTAATAG i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64131384 161 - 94057673 --TC--CTCGTCAG---GCCTTCTGATA---------AACTGGACCTCAG--CTGG-AGTGTCAG----CCCT-CCCC----ATGACT-AACAGCCGAC---CCTT---------AG---A--A----------------AAAGATCCTGCTCTAGGGTATTC--AATCAATAGGCTAGTGCCGAAGTTCCATTA-TCCAG---TGAAGG--AAATACTGGGTTTAACTG-------G i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 92310 172 - 3408981 --CT--CAGATCAGATCATACTCTGATC---------TGTTAGAATTCTACACGGTCAACATCAC----CCCT-CTTT----ATGACT-AACAACTGCC---CAGC---------AAAGAA--A----------------GAATTTTTTGCTCTTGGG-------TGTCTACAGGCTAATGCCAAATTTCCATTA-TCCAG---TGAAGG--AAGGAATAGGTTTAACTGCTTAATAG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 5890 191 + 12755 --CC--AACATCAG---ATATTCTGATA---------AATTAGAGTTCTGTTTTGTTAATAACAG----CCCTCCCTT----ATGACT--ACACTGGCT---CCAT---------AAAAAA--AAACAAAACAAACCAACAAAAACTTTGCTGTTGGGTATTAAATGTATACAG--TAGTGCCAAACTTCAATTACTTAAG---AGAAGG--AAGTATTAGGTTTAACTGCTTAGTAG i choHof1.scaffold_59997 C 0 C 0 s danRer6.chr4 56415248 167 + 71658100 TGCT--CATACCGA---ACAGTCTGACA----------CTAAAACCACTG--ATGTCA--CTCAA----TCTG-ttta----t----t-aaattttaat---taat---------aa---a--t----------------GAAAAACCTACTTTTGCGAACT---AGTCCCTGGTTTTTTGCTCAATCACCACGAAACCAGTGTTGTATG--AATCTCTGAACTGAGCTGATCAATAG i danRer6.chr4 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52465 184 + 100761 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e pteVam1.scaffold_7037 55585 14498 + 84018 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=-26458.000000 s hg19.chrUn_gl000223 44405 25 + 180455 TTAATGGAATAATCTAGAAT---------------------------------------------------TTCCA s panTro2.chr12 171645 25 - 135371336 TTAATGGAATAATCTAGAAT---------------------------------------------------TTCCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209416 25 - 136387465 TTAATGGAATAATCTAGAAT---------------------------------------------------TTCCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181909 25 - 134511895 TTAATAGAATAATCTAGAAT---------------------------------------------------TTCCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 1169 70 + 5780 TTAATGAAATAATCTAGAATAGAAGTGA-GCAAAACT---ACATTTTC-AGG-GACAGACTCCTGAGATCAGTCCA i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 4866 72 - 5263 TTAATGGAATGATCTAGAATAAGGGTGa-gcaaaatttgaaaatttgt-aggcaacagacttgagac--caatcca i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46695 74 - 48060 TTAATGGAATAATGTAAAATTTAACTGA-GCAAAATTAGAAAACTTTT-ATGCAACAGACTTCTGACAGCAGTCTA i otoGar1.scaffold_81811.1-48060 C 0 C 0 s cavPor3.scaffold_248 210066 25 + 667635 TCAATGGAGTATCCTAGAATCACAA--------------------------------------------------- i cavPor3.scaffold_248 C 0 I 46 s oryCun2.chrUn0106 655920 25 + 1032594 TCAAAGGAATAATCTAAAGTTGACG--------------------------------------------------- i oryCun2.chrUn0106 C 0 I 43 s bosTau4.chr17 29951706 72 - 76506943 TCAA--AAATAATCTAGAACAGGAGTGA-GAAAAACTTGGAAGTTTTT-AGACAACAGACTCCTGGGCCCAATCCA i bosTau4.chr17 I 1 C 0 s equCab2.chr8 64131545 72 - 94057673 TTAATGGAATAATCTAGAACTGGAGTGA-GCAAAATTAGGAAACTTTT-AGAC--CAGACTCCTGAGCTCAGTCCA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 69487 73 - 81011 TAAATGGAACAATCTAGAACTGAAGTGA-GAAAAATTAGGTCATTTTT-AGACAACAGACTCC-AAACTCAATCCA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174464 73 + 42029645 TAAATGAAATAACCTAGGATTGAGGTGA-GCAAAATTAGATCATGTTT-AGACAACAGACTCA-AAGCTCAATCCA i canFam2.chr26 C 0 C 0 s pteVam1.scaffold_7037 70083 22 + 84018 -------------------TTGAAG----GAAGAGTT----------------------CTCT---------TCTA i pteVam1.scaffold_7037 I 14498 C 0 s loxAfr3.scaffold_113 92482 72 - 3408981 TTAATGGAATAATCTAGCGTTGGAGTGA-AGAAAATCAGAAAATTTTA---AACATAGATTCCTGAGCTTTATCCA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6081 76 + 12755 TTAATGAAATAACCTAGAATTGGAGTTAGGGAAAATGGGGAAATTTTAGAGAATAAAGACTCCCGAGATCTGAGCA i choHof1.scaffold_59997 C 0 C 0 s danRer6.chr4 56415415 24 + 71658100 TTATTGAAATGAGTTGAACTTTCC---------------------------------------------------- i danRer6.chr4 C 0 n 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52465 184 + 100761 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=230993.000000 s hg19.chrUn_gl000223 44430 170 + 180455 AGACCTAATAAATCAATCTCTG--GGATT-GGA----AAGA-----GAA-T-GGT-----GATAGATGGAAAG-A--AAAAATAGGGCAA----------------AAATCACAAAG-T---ACAACATCACCCTG-----TAACTG----TTCATTTGCATTAG----TTGGTCTCCCACGTCTAGTAAAATGAATTTGAGATATTA-----AAAAGTAGGAAGttc-tt s panTro2.chr12 171670 170 - 135371336 AGACCTAATGAATCAATCTCTG--GGATT-GGA----AAGA-----GAA-T-GGT-----GACAGATGGAAAG-A--AAAAATAGGGCAA----------------AAATCACCAAG-T---ACAACATCACCCTG-----TAACTG----TTCATTTGCATTAG----TTGGTCTCCCACGTCTAGTAAAATGAATTTGAGATATTA-----AAAAGTAGGAAGttc-tt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209441 170 - 136387465 AGACCTAATGAATCAATCTCTG--GGATT-GGA----AAGA-----GAC-T-GAT-----GACAGATGGAAAG-A--AAAAACAGCGCAA----------------AAATCACAAAG-T---ACAACATCACCCTG-----TAACTG----TTCATTTGCATTAG----TTGGTCTCCCACATCTAGTAAAATGAATTTGAGATAATA-----AAAAGTAGGAAGttc-tt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 181934 171 - 134511895 AGACCTAATGAATCAGTCTCTG--GGATT-GGA----CAGA-----GAA-T-GAT-----AATAGATGGAAAGAA--AAAAATAGGGCAA----------------AAATCACAAAG-C---ACATCACCACCTTC-----TAACTG----TTCATTTGCATTAG----TTGGTCTCCCATATCTAGTAAAATGACTTTGAGATATTA-----AAAAGTAGGAAGttt-tt i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 1239 174 + 5780 AGACCCAATGAATTAACCTCTG--GGGTTAGGA----AAAG-----GAA-T-CAT-----AATAAATGGAAGAAA--AAAAAAATGACAA----------------AAATCACAAAG-TAGAACAAAACCACCCTG-----TAACTA----TTTGTTTTTTCAAAAAGCTTTGTCTCCTACATTGAGTGAAATAATTTTCAGATATTA-----AAAAGTAGAAAG------ i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 4938 179 - 5263 aaatctaatgaatcaatctctg--ggaataggA----AAGA-----GAA-T-CAT-----GATAGATGGAAAAGA--AAAAAAAAAGCAA----------------AAATCGCAAAG-T---AGAACATCACTCTATTATCTATTTG----TTCATTTACAAAGG----TTTGTCGCCCACATCTAGTACAATCACTTTCAGATATTAAAGAGAAAAGTAGAAAG-TC--- i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46769 176 - 48060 AGACCTAATGAACCAACCTCTG--GGACTAGGA----AAGA-----GAA-T-CAT-----AATATATGGGAA--G--AAAAAAATGGCAA----------------AAACTACAAAG-T---AGAACATTGCTCTA-TACCTATTTG----TTCATTTACAAAGA----TTTGGCTCTCACATTTAATAAAATAACCTTTAATTATTAAAAAGAAAAGTAGGAAG-TC--- i otoGar1.scaffold_81811.1-48060 C 0 I 1 s cavPor3.scaffold_248 210137 176 + 667635 ATATCTAATGCCTCATT-TCTG--TTACTAGTA----AAGA-----AAA-ATCAT-----GATGGATGGATGG-G--AGAAATG--AGTA----------------GAGTCACAAAG-T---ATAACATCATCCTG-TTAATGTTTG----TTCATTTACAAAGG----TTTGTCACCCTTATCTGGCAAAACAACTTTCAGGTATTAAGAAGAAAAGTAGGAAGTCC--- i cavPor3.scaffold_248 I 46 I 206 s speTri1.scaffold_137548 52649 167 + 100761 AGACCTAATGAACCAAT-TTTGTATGACTAGGA----AAGA-----GAC-A-CAT-----GAGGGATAAAATG-G--AAAAGTG---GAA----------------AAATCACAAAG-C---CGAACATCATTCTG-TTATTGTTTG----TTCATTTACAAAGG----TTTGTTTCCTTTACCGGGCAAAATAACTTTCAAGCATT---AGAGAAAATAGG--------- i speTri1.scaffold_137548 I 184 I 5 s oryCun2.chrUn0106 655988 189 + 1032594 AGACCTCATCAATCAATCTCTG--GAACCAGGA----CAGA-----GAG-T-CAC-----CATACACGGAAGG-AGTAAAATTG---GAACCTCCTTGCTATTATTTGTTCACAAAA-----GTAACACCTCCCTG-CTACTATTTG----TTCATTTA-AAAGG----TATGTCTTCCTTACCTAGAAAAATGAGTTTTAGATACT----AGAAAAGGAGGAAGTCCAT- i oryCun2.chrUn0106 I 43 I 11 s bosTau4.chr17 29951778 152 - 76506943 AGACCCAACAAGTCAATCACTG--GGCTGAGGA----AAGA-----GAC-C-CAG-----GATAGATGGAAAAGA--AAAAATG--GAAA-----ACAACAACAACAACCCACAAAG-T---AAAACACCACACTG-----TAACTACTTGTTCTTTTACATAGG----TCTGTTTCACCAACCTGGTAAAA--------------------------------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64131617 107 - 94057673 AGACCTAATTAATCAATCTCTG--GGACTAGGG----AAGA-----GAA-T-CAT-----GATAGATGGCAAGAA--AAAAAGG--GGAA----------------AAAACACAAAG-T---AAAATATCACCCTG-----TAACTG----TTTGTCT------------------------------------------------------------------------- i equCab2.chr8 C 0 I 79 s felCat3.scaffold_141210 69560 121 - 81011 AGAACTAACGAATCAATATCTG--GGACTAGGG----AAGA-----GAA-T-CAG-----GAGAGATAAAAATTT--AAAAATG--GGAG----------------AATCTACAAAG-T---AAAACATAACCCTA-----TAACTA----TTCTTTTAC-----------------------------AAATGAAGTTGA------------------------------ i felCat3.scaffold_141210 C 0 I 31 s canFam2.chr26 3174537 111 + 42029645 AAAACTAATGAATCAAACTCTG--GGAAGGGGA----AAGA-----GAA-T-CAT-----GATAAATGAAAATTT--AAAAATG--GGAA----------------AATCTACAAAGTT---AAGACATCACCCTG-----TAACTA----TTCTATTACA---------------------------------------------------------------------- i canFam2.chr26 C 0 I 41 s pteVam1.scaffold_7037 70105 111 + 84018 AAAGCTCAGAAACAAATTGCTA--GGTTAAAGGTTATAATA-----TTC-T-CAC-----TTTGGACACATATTT--CTTATCA--CGAG----------------GATCTGTA----------------------------------------------TTAAT----TTACGCTCCCATCACTAGCCTAAAGA------------------------------------ i pteVam1.scaffold_7037 C 0 N 0 s loxAfr3.scaffold_113 92554 151 - 3408981 AGATTGAAAGCGTCAATCTCTG--GAATTAAGA----AAGATTCATGATGT-AACAAAAAAATGGGAAAAAAT-A--AAAAACA----CA----------------AAGTAGGACAG-----AGAATACTGCCCTG-TAACTATCTG----GTCATTTACAAAAG----TCTGGTTCCCCCATCTGGTAAAAGGA------------------------------------ i loxAfr3.scaffold_113 C 0 I 9 s choHof1.scaffold_59997 6157 157 + 12755 AGACATAATGAATCAATCTCTT--GGGCTAGGG----AAGA-----GAT-T-AAC-----AATGG------AT-G--AAAAAT-----------------------GAGTAGAACAA-----AGAATATCATCCTG-TAACTAATTG----ATCACTTATTGAGG----TCCATTTCCCCCATCTGGTAAAATGATTTGGGGGTATTAGGAAGATAAAAAG---------- i choHof1.scaffold_59997 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e danRer6.chr4 56415439 0 + 71658100 I e xenTro2.scaffold_1326 50728 0 + 95661 I a score=61099.000000 s hg19.chrUn_gl000223 44600 132 + 180455 tttcttttcttttttt--gacagaggctcgctctgtcgcccaggctg-----------cacaatcttggctcactgcaacctctg-cctctcaggttcaagtgattctcctgcctcagcctcctgagtaactgggattacaggcac s rheMac2.chr11 182105 145 - 134511895 ttttttttttttttttgagacacagtctagctctgttgcccaggctggagtgcagtggtgccatcttggctcactgcaacctccaccctctcgggttcaagtgattct-ctgcctcagcctcccaagtaactgggattacaggcac i rheMac2.chr11 C 0 I 325 s ponAbe2.chr12 209611 141 - 136387465 ttttttttctttttttgagacagaggctcactctgttgcccaggctggagtgcaatggcacgatcttggctcactgcaacctctg-cctctcaggttcaagtgattctcctgcctcagcctcc----taactgggattacacacac i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 171840 143 - 135371336 tttcttttcttttttt--gacagaggctcgctctgtcgcccaggctggagtgcaatggcacgatcttggctcactgcaacctctg-cctctcaggttcaagtgattctcctgcctcagcctcctgagtaactgggattacaggcac i panTro2.chr12 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52816 5 + 100761 I e micMur1.scaffold_51584 5117 0 - 5263 C e felCat3.scaffold_141210 69681 31 - 81011 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e oryCun2.chrUn0106 656177 11 + 1032594 I e otoGar1.scaffold_81811.1-48060 46945 1 - 48060 I e tarSyr1.scaffold_155717 1413 0 + 5780 C e loxAfr3.scaffold_113 92705 9 - 3408981 I e danRer6.chr4 56415439 0 + 71658100 I e xenTro2.scaffold_1326 50728 0 + 95661 I e choHof1.scaffold_59997 6314 0 + 12755 C e cavPor3.scaffold_248 210313 206 + 667635 I e bosTau4.chr17 29951930 0 - 76506943 C e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3174648 41 + 42029645 I a score=3532.000000 s hg19.chrUn_gl000223 44732 23 + 180455 gcacaaccatgcccggctaattt---------- s ponAbe2.chr12 209752 33 - 136387465 gcgccaccatgcccagctaatgttctttatttt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 171983 28 - 135371336 gcacaaccatgcccggctaatttt-----tttt i panTro2.chr12 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52816 5 + 100761 I e micMur1.scaffold_51584 5117 0 - 5263 C e felCat3.scaffold_141210 69681 31 - 81011 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e oryCun2.chrUn0106 656177 11 + 1032594 I e otoGar1.scaffold_81811.1-48060 46945 1 - 48060 I e tarSyr1.scaffold_155717 1413 0 + 5780 C e loxAfr3.scaffold_113 92705 9 - 3408981 I e danRer6.chr4 56415439 0 + 71658100 I e xenTro2.scaffold_1326 50728 0 + 95661 I e choHof1.scaffold_59997 6314 0 + 12755 C e rheMac2.chr11 182250 325 - 134511895 I e cavPor3.scaffold_248 210313 206 + 667635 I e bosTau4.chr17 29951930 0 - 76506943 C e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3174648 41 + 42029645 I a score=20782.000000 s hg19.chrUn_gl000223 44755 49 + 180455 aagacagggttttgccatgttggccatgaacatgctggtcttcaactcc s panTro2.chr12 172011 49 - 135371336 aagacagggttttgccatgttggccatgaacatgttggtcttcaactcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209785 49 - 136387465 aagacagggtttcaccatgttggccatgaacatgttggtcttgaactcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 182575 49 - 134511895 aagacagggtttcaccatgttggccatgaacatgttggtcttgaattcc i rheMac2.chr11 I 325 C 0 s tarSyr1.scaffold_155717 1413 13 + 5780 ----------------------GCCATACATTTGA-------------- i tarSyr1.scaffold_155717 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52816 5 + 100761 I e micMur1.scaffold_51584 5117 0 - 5263 C e felCat3.scaffold_141210 69681 31 - 81011 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e oryCun2.chrUn0106 656177 11 + 1032594 I e otoGar1.scaffold_81811.1-48060 46945 1 - 48060 I e loxAfr3.scaffold_113 92705 9 - 3408981 I e danRer6.chr4 56415439 0 + 71658100 I e xenTro2.scaffold_1326 50728 0 + 95661 I e choHof1.scaffold_59997 6314 0 + 12755 C e cavPor3.scaffold_248 210313 206 + 667635 I e bosTau4.chr17 29951930 0 - 76506943 C e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3174648 41 + 42029645 I a score=4929.000000 s hg19.chrUn_gl000223 44804 48 + 180455 tgacctcaagtgatccacttgaggtctccacttgaggtcctcagcctc s papHam1.Contig225293 31 11 + 245 -------------------------------------tcctcagcctc i papHam1.Contig225293 N 0 C 0 s rheMac2.chr11 182624 31 - 134511895 tgacctcaagtgatccaccc-----------------tcctcagcctc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 209834 31 - 136387465 tgacctcaagtgatccaccc-----------------tccttagcctc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172060 48 - 135371336 tgacctcaagtgatccacttgaggtctccacttgaggtcctcagcctc i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29951930 10 - 76506943 TGACCTTAAG-------------------------------------- i bosTau4.chr17 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46946 8 - 48060 ------------ATACATTT---------------------------- i otoGar1.scaffold_81811.1-48060 I 1 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 52816 5 + 100761 I e micMur1.scaffold_51584 5117 0 - 5263 C e felCat3.scaffold_141210 69681 31 - 81011 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e oryCun2.chrUn0106 656177 11 + 1032594 I e tarSyr1.scaffold_155717 1426 0 + 5780 C e loxAfr3.scaffold_113 92705 9 - 3408981 I e danRer6.chr4 56415439 0 + 71658100 I e xenTro2.scaffold_1326 50728 0 + 95661 I e choHof1.scaffold_59997 6314 0 + 12755 C e cavPor3.scaffold_248 210313 206 + 667635 I e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3174648 41 + 42029645 I a score=22159.000000 s hg19.chrUn_gl000223 44852 81 + 180455 ccaaagtgctgggattacaggcatgagccactgtgccc---agccAGGAAGTTCA---------TACACTTGAGTATGAACAAAAAGTTGGAA s otoGar1.scaffold_81811.1-48060 46954 22 - 48060 ------------GATTATAAATA-----------------------------------------------------------AAAAAATTGGA i otoGar1.scaffold_81811.1-48060 C 0 C 0 s bosTau4.chr17 29951940 49 - 76506943 -----------GTATTA-----GTGAG-------------------AAAAGTCCA---------TACATTTACGTATGAATAAAAATTTGGGA i bosTau4.chr17 C 0 C 0 s panTro2.chr12 172108 81 - 135371336 ccaaagtgctgggattacaggcatgagccactgtgccc---agccAGGAAGTTCA---------TACACTTCAGTATGAACAAAAAGTTGGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209865 81 - 136387465 ccaaagtgctgggattacaggcatgagccactgtgccc---agccAGGAAGTTCA---------TACACTTGAGTATGAACAAAAAGTTGGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 182655 81 - 134511895 ccaaagtgctgggattacaggcgtgagccaccatgccc---agccAGGAAGTTCA---------TACACTTGAGTATGAATAAAAAGTTGGAA i rheMac2.chr11 C 0 C 0 s choHof1.scaffold_59997 6314 37 + 12755 --GAAGTCT---------------------------------------------A---------TAAATGTGAGTATGAATAAAAAACTGGAT i choHof1.scaffold_59997 C 0 C 0 s papHam1.Contig225293 42 81 + 245 ccaaagtgctgggattacaggcgtgagccaccatgccc---agccAGGAAGTTCA---------TACACTTGAGTATGAATAAAAAGTTGGAA i papHam1.Contig225293 C 0 C 0 s danRer6.chr4 31897753 77 - 71658100 CTAAATTGTTACC----------------ACTGCAACAAGGAGCAAGGAGCTGCACAAAAGATCTACATCAAAGGACAAACAAAACATTATGA i danRer6.chr4 n 0 C 0 s loxAfr3.scaffold_113 92714 54 - 3408981 -------------ATTAGGGGGAAAAA-----------------CAGGAAAATCA---------TAATTTGGAGTATAAATAAAAAATTGGAT i loxAfr3.scaffold_113 I 9 C 0 s tarSyr1.scaffold_155717 1426 20 + 5780 -------------------------------------------------------------------------GTATGAATAAAAAATTGGGA i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 5117 31 - 5263 -----------------------------------------------------CA---------TACATTTGCATATAAATAAAAAATTTGGA i micMur1.scaffold_51584 C 0 C 0 s speTri1.scaffold_137548 52821 31 + 100761 -----------------------------------------------------CA---------TAAACTGGAGGAAGAATAATGAATCAGGA i speTri1.scaffold_137548 I 5 C 0 s oryCun2.chrUn0106 656188 23 + 1032594 ----------------------------------------------------------------------TGAATAAGAAAAAAAAAATGGGT i oryCun2.chrUn0106 I 11 C 0 s canFam2.chr26 3174689 39 + 42029645 ---------------------------------------------AGGAAGTCCT---------TACATTTGAGTATGAATACAAATTTGGGG i canFam2.chr26 I 41 C 0 s felCat3.scaffold_141210 69712 40 - 81011 --------------------------------------------CAGGAAGTCCA---------TATGTTTGAGCATGAATAAAAATTTGGGA i felCat3.scaffold_141210 I 31 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e xenTro2.scaffold_1326 50728 0 + 95661 I e cavPor3.scaffold_248 210313 206 + 667635 I e equCab2.chr8 64131724 79 - 94057673 I a score=-13738.000000 s hg19.chrUn_gl000223 44933 23 + 180455 AATTAAATG-CTTT--A-AAATTAC--AG s rheMac2.chr11 182736 23 - 134511895 AATTAGATG-CTTT--A-AAATTAC--AG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 209946 23 - 136387465 AATTAGATG-CTTT--A-AAATTAC--AG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172189 23 - 135371336 AATTAAATG-CTTT--A-AAATTAC--AG i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29951989 19 - 76506943 AATAGGATT-TTGT--T-GAAAT------ i bosTau4.chr17 C 0 C 0 s papHam1.Contig225293 123 23 + 245 AATTAGATG-CTTT--A-AAATTAC--AG i papHam1.Contig225293 C 0 C 0 s otoGar1.scaffold_81811.1-48060 46976 24 - 48060 AATTGGATG-CTTTT-A-CAATTAC--CA i otoGar1.scaffold_81811.1-48060 C 0 C 0 s loxAfr3.scaffold_113 92768 16 - 3408981 CCTTTAAAA-ATTA--T-CA--------- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6351 16 + 12755 CCTTATAAA-CTTA--T-CA--------- i choHof1.scaffold_59997 C 0 C 0 s tarSyr1.scaffold_155717 1446 24 + 5780 GACCACATG-TTTT--CTAAATTAC--TA i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 5148 25 - 5263 AATTGGATG-CTTTTGA-AAATTAC--TA i micMur1.scaffold_51584 C 0 C 0 s speTri1.scaffold_137548 52852 21 + 100761 AATTAGATG-TTTA--A-AAATTAC---- i speTri1.scaffold_137548 C 0 I 431 s oryCun2.chrUn0106 656211 23 + 1032594 AACTGGATGATTTT--A-AAATCA-TC-- i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3174728 16 + 42029645 ACCTAGATA-CTTT--T-AA--------- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 69752 19 - 81011 AGTTAGATA-CTTT--T-AAAAT------ i felCat3.scaffold_141210 C 0 C 0 s xenTro2.scaffold_1085 166218 23 - 187191 AATAAAATG-GATG--G-AAATTTT--TG i xenTro2.scaffold_1085 n 0 C 0 s danRer6.chr4 31897830 23 - 71658100 AAATAAATG-TTTT--A-AAAATTA--AG i danRer6.chr4 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e cavPor3.scaffold_248 210313 206 + 667635 I e equCab2.chr8 64131724 79 - 94057673 I a score=-128468.000000 s hg19.chrUn_gl000223 44956 52 + 180455 CA--T---GGAAAGACAG----AATTATTTGGCT-----GTTGAA-------------CTGG------TATT--CTGGTTTAGAAAA s panTro2.chr12 172212 52 - 135371336 CA--T---GGAAAGACAG----AATTATTTGGCT-----GTTGAA-------------CTGG------TATT--CTGGTTTAGAAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 209969 52 - 136387465 CA--T---GGAAAGACAG----AATTATTTGGCT-----GTTGAA-------------CTGG------TATT--CTGGTTTAGAAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 182759 52 - 134511895 CA--C---AGAAAGACAG----AATTATTTGGCT-----GTTGAA-------------CTGG------TATG--CTGGTTTAGAAAA i rheMac2.chr11 C 0 C 0 s papHam1.Contig225293 146 52 + 245 CA--C---AGAAAGACAG----AATTATTTGGCT-----GTTGAA-------------CTGG------GATG--CTGGTTTAGAAAA i papHam1.Contig225293 C 0 C 0 s tarSyr1.scaffold_155717 1470 53 + 5780 C----------AAGATAG----GTTTATTTGACT-----GTTAAT-------------TTAGAAAATTTAGA--TCAGTTTAGAGAA i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 5173 54 - 5263 TGA-G---AAAAAACCAA----GATTATATGGCT-----GTTGAA-AT--T-------CTGG------TAGA--TATGTTTAGAA-- i micMur1.scaffold_51584 C 0 C 0 s otoGar1.scaffold_81811.1-48060 47000 53 - 48060 TG--G---AGACAAATAG----GATTATTTGGCT-----GTTGAA-AT--T-------CTGG------TATG--TTGGTTTAAAA-- i otoGar1.scaffold_81811.1-48060 C 0 C 0 s speTri1.scaffold_137548 53304 59 + 100761 TA--T---GAAAAAAGAGTGGGGACAATTTGGAC-----ATTGAA-AT--T-------CTGT------TATA--TTGGCTTAGAAAT i speTri1.scaffold_137548 I 431 C 0 s oryCun2.chrUn0106 656234 52 + 1032594 CA--C---GAGAAAATAG-------ATTTTGGCT-----ATTGAA-AT--T-------CTGG------CATG--GTGCCATAGAAAA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952008 22 - 76506943 --------------------------------------------------T-------CTGG------TACA--ATAGTTCATGAAA i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 69771 28 - 81011 -----------------------------------------TACC-AT--C-------CTGG------TGTA--GTGGATTAGAAAA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174744 22 + 42029645 --------------------------------------------------T-------CCGG------TGCA--GTGGTTTAGAAAA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 92784 54 - 3408981 --TAT---GGATAAACAG----GATTAATTGGCT-----AT--AAAAT--C-------CTGG------TATG--CTGGTTCAGAAAA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6367 58 + 12755 --TGTA--GAAGGAACAG----GCTTATTTGCTT-----GTTGAAAAT--T-------CTGT------TATGCTCTGGTTCA-AAAA i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_1085 166241 54 - 187191 -------------TATAG----ACTTGTAGGGCTTCATGGTGGAC-ATGAT-------CTGC------AATA--TAAAGATAGGACA i xenTro2.scaffold_1085 C 0 C 0 s fr2.chrUn 295827685 46 + 400509343 -----CATGGAAAAGCAT----AATTACTTAGTT-----TTTTAA-----TTGGGAGCTTTA------TAA---------------- i fr2.chrUn N 0 C 0 s danRer6.chr4 31897853 39 - 71658100 -----TAAAGAGAGCTTC----AGCTATTTTTTT-----CTTTGA-----T-------TTCT------GAA---------------- i danRer6.chr4 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e cavPor3.scaffold_248 210313 206 + 667635 I e equCab2.chr8 64131724 79 - 94057673 I a score=69456.000000 s hg19.chrUn_gl000223 45008 46 + 180455 TTAT--TCATTTATTTAAAATTC----------------------------C----AACTTTCCCAAAATGTTG-CAAAAT s panTro2.chr12 172264 46 - 135371336 TTAT--TCATTTATTTAAAATTC----------------------------C----AACTTTCCCAAAATGTTG-CAAAAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210021 48 - 136387465 TTATTCTCATTTATTTAAAATTC----------------------------C----AACTTTCCCAAAATGCTG-CAAAAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 182811 38 - 134511895 TTAT----------TTAAAATTC----------------------------C----AACTTTCCCAAAATGTTG-CAAAAT i rheMac2.chr11 C 0 C 0 s papHam1.Contig225293 198 45 + 245 TTATTCTCATTTATTTAAAATTC----------------------------C----AACTTTCCCAAAATGTTG-CAA--- i papHam1.Contig225293 C 0 N 0 s tarSyr1.scaffold_155717 1523 48 + 5780 TTACTCTCATTTATTTAAAGTCC----------------------------C----AACTTTCCAAAAATGTTG-CAAAAT i tarSyr1.scaffold_155717 C 0 C 0 s micMur1.scaffold_51584 5227 35 - 5263 ------------AATTAAAGTCC----------------------------C----AATTTTCC-AAAACGTTG-CAAAAT i micMur1.scaffold_51584 C 0 N 0 s otoGar1.scaffold_81811.1-48060 47053 44 - 48060 CTACTCTCATTTGTGTAAGGTCC----------------------------C----AGTTTTCC-AAAATGCTG-CAA--- i otoGar1.scaffold_81811.1-48060 C 0 C 0 s cavPor3.scaffold_248 210519 44 + 667635 ----TTATTCTTATTAAGAATTC----------------------------C----AACTTTCCAACAAAGCTG-CATGCT i cavPor3.scaffold_248 I 206 C 0 s speTri1.scaffold_137548 53363 48 + 100761 TTAATCACATTTATCTTATGTCT----------------------------T----AACTTCCCAACCATGTTG-CAAAAT i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 656286 48 + 1032594 TTATTTTCATTTACTTAAAGTTC----------------------------C----AACTCTCCAAAAATGTCA-GAAAAT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952030 48 - 76506943 TTACCCTCATTTACTTAATATTC----------------------------A----AATTTTACAACAATGATG-TAAAAT i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 69799 43 - 81011 TTACTCTCA-----TTGAAGTCC----------------------------C----AATTTTTCAACAATGATG-TAAAAT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174766 37 + 42029645 CTACT------------ACGTCC----------------------------C----AAATATTCAATAATGATGCTAAAAT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 92838 41 - 3408981 CTACTCTCATTTA---AAATACC----------------------------A----AGCTTTCA-ACAATGTTG-CTG--- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6425 47 + 12755 TTATTCCCTTTTATTTAAATTCC----------------------------C----CACTTTTC-AAAATGTTG-CAAAAC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_1085 166295 44 - 187191 ----TTTCATCT--TCAAAAGTC----------------------------CTTTTAACTTGTAGGTGAAGTTA-CATA-- i xenTro2.scaffold_1085 C 0 I 5009 s fr2.chrUn 295827731 51 + 400509343 ----------CTATATAACAATGTCATCAGTCTCACCTGATTTTGCAAATGT----AATTTCCCT---------------- i fr2.chrUn C 0 C 0 s danRer6.chr4 31897892 30 - 71658100 ----------GTATTTGAAGCTTTGAGC-----------------------C----ACTTTCTCTAC-------------- i danRer6.chr4 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e equCab2.chr8 64131724 79 - 94057673 I a score=-104078.000000 s hg19.chrUn_gl000223 45054 77 + 180455 CAATAATTAAAG-------GAGAAA-ATAT------------------TGTTTAAGGTAAAGGTGC--------------A--------AAATACCA---TACTG--ATACAACAATTTGAACATAAA---------------AG s otoGar1.scaffold_81811.1-48060 47097 73 - 48060 ----AATTAAAG-------GA-AAA-ATAC------------------TTCTAGAATCAAAGGTGC--------------A--------ATACACTA---TACTGATATATAACAATTTGTGCATAAC---------------A- i otoGar1.scaffold_81811.1-48060 C 0 C 0 s tarSyr1.scaffold_155717 1571 73 + 5780 TGATAATTAAAG-------GA-AGA-ATAC------------------TGCTAGACTTAAAGGTAC--------------A--------ATACACCA---CAATG--ATACAACAAATTGTGCAAAA------------------ i tarSyr1.scaffold_155717 C 0 C 0 s papHam1.Contig27513 3 77 + 933 CAATAATTAAAG-------AAGAAA-ATAC------------------TGTTCATGGTAAAGGTGC--------------A--------AAATACCA---TACTG--ATACAACAATTTGAACATAAA---------------AG i papHam1.Contig27513 N 0 C 0 s rheMac2.chr11 182849 77 - 134511895 CAATAATTAAAG-------AAGAAA-ATAC------------------TGTTCATGGTAAAGGTGC--------------A--------AAATACCA---TACTG--ATACAACAATTTGAACATAAA---------------AG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210069 77 - 136387465 CAATAATTAAAG-------GAGAAA-ATAC------------------TGCTTAAGGTAAAGGTGC--------------A--------AAATACCA---TACTG--ATACAACAATTTGAACATAAA---------------AG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172310 77 - 135371336 CAATAATTAAAG-------GAGAAA-ATAC------------------TGTTTAAGGTAAAGGTGC--------------A--------AAATACCA---TACTG--ATACAACAATTTGAACATAAA---------------AG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 210563 72 + 667635 -TGTAATTAAAG-------GAAAAA-ATAC------------------TGTTGGAATCAAAGATAA--------------A--------ATATATCA---TTTTG--AAAAAATTTTT-GTGCATAA------------------ i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 53411 61 + 100761 ---TAATTAAA--------GAAAGA-ATAT------------------GATTAGAAT-AGAAATTA--------------C--------ATAAACCA---TACTA--ATAAGACAATTT-------------------------- i speTri1.scaffold_137548 C 0 I 401 s oryCun2.chrUn0106 656334 67 + 1032594 TTATAATTAA---------GAAGAA-CAAC------------------TGCAAAAATCAAAGGGGC--------------A--------AC--ACCA---CAACG--ACACGATCTGT-GCGCAA-------------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952078 73 - 76506943 T-GTAGGTAAAG-------AAAAAA-ATGC------------------TGCTAGAATCAAAGTTAC--------------C--------AAACACCA---CACTG--TTAAAACGACTTGCACATGA------------------ i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 69842 62 - 81011 TGGTAATTACAG-------GAAAGA-ATAC------------------TGGTAAACTCAAAGGTGC--------------G--------G---ACA--------------AAGCGACTTGTGCATGA------------------ i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174803 66 + 42029645 TGGTAACTAAAG-------GAAAAAGACAC------------------TGCTAGAATCAAAAGCAC--------------A--------ATACACC--------------ATACTGATAAAGCAAGA------------------ i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 92879 73 - 3408981 ----AATTAAAG-------GAAAAA-ATAC------------------TGACAGAATCCAAGGTGT--------------A--------ATAGACCA---TACTC--ATGTAACAGTTTGTGCACTAC---------------AG i loxAfr3.scaffold_113 C 0 I 1 s choHof1.scaffold_59997 6472 73 + 12755 TGGCAATTAAAG-------GAAAAA-ATAG------------------TGTTAGGA-CAAAGGTGC--------------A--------ATATACTA---TGCTC--AT---ACAATTTGTGCATGAG---------------AA i choHof1.scaffold_59997 C 0 I 1 s xenTro2.scaffold_960 5426 101 - 281655 CAATAAGCTAAGTTGTAGTGCAATG-GTAT------------------GTTCCAAAGCAAATGTGCCTGATTCACAAATAA--------ACATGCCAACTCACTG--ATGGAAAGGTTTTAAAATAAA---------------AG i xenTro2.scaffold_960 n 5009 C 0 s fr2.chrUn 295827782 87 + 400509343 ---------TTG-------CCaaat-atca---------------------tttcattt-cagtaG--------------ATTTCTCTTACACAAAA---TATTG--ACAGtcattgtcatttaaaaaaaagattcataCAATAG i fr2.chrUn C 0 C 0 s gasAcu1.chrIV 25506998 71 + 32632948 --GTAGCTAAAA-------AAAAAG-GTAA-------------------------------AGAAA--------------A--------AAGTATTG---TTTTG--------GTTGGAGGTCAAGAAGGTTTTGGTTATGGAAG i gasAcu1.chrIV N 0 C 0 s oryLat2.chr9 28014612 69 - 33213694 ---------AGG-------CAGAAT-ACAA-------------------------------AGTAA--------------A--------AAGTGAGA---GTTTG--CCGTCAATATTAGGACACGACGG-GATGGGAATGGAAG i oryLat2.chr9 N 0 C 0 s danRer6.chr4 31897922 84 - 71658100 ------CTCAGA-------AAAAAA-ACATCTAAAAGAGGGTCTGCACTTTTTCCACTCACAGCAA--------------T--------GAATATGA---TATTT--AC-CCAATAGTAAAATAAA------------------- i danRer6.chr4 C 0 n 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e equCab2.chr8 64131724 79 - 94057673 I a score=-48704.000000 s hg19.chrUn_gl000223 45131 25 + 180455 GAGAAGTC---------TTGA---------------------------GTTTTTCTAAGTT-- s otoGar1.scaffold_81811.1-48060 47170 21 - 48060 --GAAATC---------TTGA---------------------------CTTTT--TAAGTT-- i otoGar1.scaffold_81811.1-48060 C 0 C 0 s tarSyr1.scaffold_155717 1644 12 + 5780 -------------------------------------------------TTTTTCTAAGTT-- i tarSyr1.scaffold_155717 C 0 C 0 s papHam1.Contig27513 80 25 + 933 GTGAAGCC---------TTGA---------------------------TTTTTTGTAAGTT-- i papHam1.Contig27513 C 0 C 0 s rheMac2.chr11 182926 25 - 134511895 GTGAAGCC---------TTGA---------------------------TTTTTTGTAAGTT-- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210146 25 - 136387465 GAGAAGTC---------TTGA---------------------------GTTTTTCTAAGTT-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172387 25 - 135371336 GAGAAGTC---------TTGA---------------------------GTTTTTCTAAGTT-- i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 210635 52 + 667635 GAGAAATC---------TTGAAAAAAAATTGTGCATAAAAGAAATCTACATTTCTAAACTT-- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 53873 24 + 100761 GAAAAATC---------TCAA----------------------------TTTTCTGAAGTT-- i speTri1.scaffold_137548 I 401 C 0 s oryCun2.chrUn0106 656401 20 + 1032594 -GGAAGTC---------CGAC----------------------------ATCGTTTG---T-- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952151 24 - 76506943 GAGAAGAC---------CTGA----------------------------TTTTTCCAAGTG-- i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 69904 24 - 81011 AAGAAGTC---------TTGA----------------------------TTTTCCCAAGTC-- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174869 25 + 42029645 GAGAAGTC-T-------TTGA----------------------------TTTTTCCAAGTC-- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 92953 22 - 3408981 AAGAG--C---------TTGA----------------------------TTTTTCTAAGTT-- i loxAfr3.scaffold_113 I 1 C 0 s choHof1.scaffold_59997 6546 20 + 12755 AAGAAGCC---------TTGA----------------------------TTTTT----GTT-- i choHof1.scaffold_59997 I 1 C 0 s xenTro2.scaffold_960 5527 25 - 281655 ---------CACTTTTTTTGT---------------------------GTTTTTTTATGTT-- i xenTro2.scaffold_960 C 0 C 0 s oryLat2.chr9 28014681 27 - 33213694 GAGAAACA---------CTGA---------------------------CATGATAGATGATGA i oryLat2.chr9 C 0 C 0 s gasAcu1.chrIV 25507069 29 + 32632948 TGTGACCAGT-------TTGC---------------------------CACCATGGCAGAAGA i gasAcu1.chrIV C 0 C 0 s fr2.chrUn 295827869 25 + 400509343 CTtaaata---------tt-----------------------------tatcatttatcattt i fr2.chrUn C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e danRer6.chr4 31898006 0 - 71658100 I e equCab2.chr8 64131724 79 - 94057673 I a score=55634.000000 s hg19.chrUn_gl000223 45156 44 + 180455 TGCAATCAAGCTCAATATT-------------------GG--ACTTTTCTAA-------ATTTCATCA-GCAT s otoGar1.scaffold_81811.1-48060 47191 44 - 48060 TGGAATCAATCTCAATGTT-------------------GG--ACTTTTCTGA-------ATTTCAACA-CCAT i otoGar1.scaffold_81811.1-48060 C 0 C 0 s tarSyr1.scaffold_155717 1656 44 + 5780 TGTAATCAAGTTCACTGTT-------------------GG--ACTTTTCTGA-------ATTTCATCA-CCAT i tarSyr1.scaffold_155717 C 0 C 0 s papHam1.Contig27513 105 44 + 933 TGCAATCAAGCTCAATATT-------------------GG--ACTTTTCTAA-------ATTTCATCA-GCAT i papHam1.Contig27513 C 0 C 0 s rheMac2.chr11 182951 44 - 134511895 TGCAATCAAGCTCAATATT-------------------GG--ACTTTTCTAA-------ATTTCATCA-GCAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210171 44 - 136387465 TGCAACCAAGCTCAATATT-------------------GG--ACTTTTCTAA-------ATTTCATCA-GCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172412 44 - 135371336 TGCAATCAAGCTCAATATT-------------------GG--ACTTTTCTAA-------ATTTCATCA-GCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 210687 44 + 667635 TGGAATCAAGCTTAATGTC-------------------AG--ATTCTTGTCA-------GTTTCATTA-CAAT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 53897 34 + 100761 TGAAATCAAGCTCAA---A-------------------AG--CTTGATATTA-------G-------A-CATT i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 656421 44 + 1032594 TTGGATCCAGCTCACTGCT-------------------GG--ACTTTTCTGA-------ATTCAATCG-TTAT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952175 38 - 76506943 TGGAAACTAGACTA-------------------------G--ACTTTTCTGA-------TTTTCACCA-TCAT i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 69928 39 - 81011 TGGAATCAAAGTCA------------------------GG--ACTTTTCTGA-------ATTTCACCA-TCAT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3174894 44 + 42029645 TGGTAACAAGATCAGGATT-------------------GG--ACTTTTCTGA-------ATTTCACCA-TCAT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 92975 44 - 3408981 TAAAATCAAGCTTCATGTT-------------------GA--ACTTTTCTGA-------ATTTCATCA-CCAT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6566 44 + 12755 TGAATTCAGGCTCATTTTT-------------------GG--ACTCTTCTGA-------ATATCATCA-CCAT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_960 5552 29 - 281655 TTACATTA--TTTTGTATT-------------------G-----TTTAGTGC-------ATT----------- i xenTro2.scaffold_960 C 0 C 0 s fr2.chrUn 295827894 53 + 400509343 gaTAATTAATTCTAAAAGG-------------------GGTACCCTCCACCAGTGAGATTTGTTATTT-GCAT i fr2.chrUn C 0 C 0 s gasAcu1.chrIV 25507098 66 + 32632948 GAATAATGAGTCCAAAGAGTTAAAAGAAAATAATACAAAATAAAATGAATAA-------TTGTTAAAATGTGC i gasAcu1.chrIV C 0 C 0 s oryLat2.chr9 28014708 42 - 33213694 CATTAATAATTGAAACGAG-----------------------ACCTGCTTCA-------TAGTCAAAA-GCAT i oryLat2.chr9 C 0 C 0 s danRer6.chr22 1572566 38 + 41415389 TGCAACTAATTTAATAATC-----------------------ACTTTTCTTA-------TAGAT-----GCGT i danRer6.chr22 n 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tupBel1.scaffold_132008.1-22537 18365 150 + 22537 I e equCab2.chr8 64131724 79 - 94057673 I a score=-119210.000000 s hg19.chrUn_gl000223 45200 93 + 180455 AC-AAAAAATA----TT-AACTTTGCCAAGCAACATTATTGAGAGAA--C--A---TTACAAAA------T----CCTTACTT---------------------AGCTAAG----GGATGGTTCATGCATTTTT--AT--GGAAA s panTro2.chr12 172456 93 - 135371336 AC-AAAAAATA----TT-AACTTTGCCAAGCAACATTATTGAGAGAA--C--A---TTACAAAA------T----CCTTACTT---------------------AGCTAAG----GGATGGTTCATGCATTTTT--AT--GGAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210215 94 - 136387465 AT-AAAAAATA----TTAAACTTTGCCAAGCAACATTATTGAGAGAA--A--A---TTACAAAA------T----CCTTACTT---------------------AGCTAAG----GGATGGTTCATGCATTTTT--AT--GGGAA i ponAbe2.chr12 C 0 I 6 s rheMac2.chr11 182995 91 - 134511895 ACAAAAAAATA----TT-AACTTTGTCAAGCAAC---ATTGAGAGAA--C--A---TTACAAAA------T----CCTTACTT---------------------AGCTAAG----GGATGGTTCATGCATTTTT--AT--GGAAG i rheMac2.chr11 C 0 I 6 s papHam1.Contig27513 149 90 + 933 AC-AAAAAATA----TT-AACTTTGTCAAGCAAC---ATTGAGAGAA--C--A---TTACAAAA------T----CCTTACTT---------------------AGCTAAG----GGATGGTTCATGCATTTTT--AT--GGAAG i papHam1.Contig27513 C 0 I 6 s tarSyr1.scaffold_155717 1700 94 + 5780 A--AAAAAATA----TG-AACTTTGTCAAGCAACATTATAGACAAAA--C--A---GTACAAAA------T----TCTTACTT---------------------AGCTTAT----GGATGGTCCATGCACTTTTAAAG--GGAAG i tarSyr1.scaffold_155717 C 0 I 6 s otoGar1.scaffold_81811.1-48060 47235 100 - 48060 GT-GAAAAATATGTGTT-AACTTTGTCAAGCAACATGATAGAGATAA--A--ACCCTTAAAAAA------C----TCTAATTT---------------------AGCTAAG----AGATGGTTCATGCACTTTTAAAA--GGA-- i otoGar1.scaffold_81811.1-48060 C 0 n 0 s tupBel1.scaffold_132008.1-22537 18515 96 + 22537 at-aaataaaa----tt-aaattt--taaaaaatcttttaaaaaatG--CCTA---TTGCAGAA------TAAAATCTACTTT---------------------AGCTAAG----GG-TGGCTCATGTACATTG--AA--AGGAA i tupBel1.scaffold_132008.1-22537 I 150 I 8 s cavPor3.scaffold_248 210731 92 + 667635 --ACAAAAATG----TC-AACTTCAAGC---ACTATCACAGAGAGAA-AA--A---CTACAAAA------T----TCTAACTT---------------------ACCTAAG----AGCTGCTTCATGTCTTTTA--AAAGGAAAA i cavPor3.scaffold_248 C 0 I 5 s speTri1.scaffold_137548 53931 74 + 100761 --TCTGAA-------------------------CATTACAGAGAGAATGA--A---CTATAAAA------T----TTTATTTT---------------------AGCTCAG----GGATGTTTCCTACATTTTA--AC--GGAAA i speTri1.scaffold_137548 C 0 I 5 s oryCun2.chrUn0106 656465 90 + 1032594 --ACAAAAATA----TT-AGCTTTTTTCA--AACACTACAGAGAAAA--C--A---CTACACAA------T----TCTAAATT---------------------GGCTAA------ATTAGTTCATGCATTATT--AAAGGAAAG i oryCun2.chrUn0106 C 0 I 5 s bosTau4.chr17 29952213 96 - 76506943 AC-AAAAAACA-TAGTT-GATTTTGTCGAACAACATTATAGAGAAAT--T--A---CTACAAAA------G----TCTAAATA---------------------GACGTAG----GCATGGGTCATGCATTTCC--AG--AAGGA i bosTau4.chr17 C 0 I 7 s felCat3.scaffold_141210 69967 94 - 81011 AC-AAAGAATA-CTATA-CACTTTGTCAAGGATCATTATAAAG--AT--C--A---CTGCAAAG------T----TCCACCTG---------------------AGCTAAA----GGGTGGTTCATGCACTGTC--GA--AGCGA i felCat3.scaffold_141210 C 0 I 7 s canFam2.chr26 3174938 89 + 42029645 AC-AAAGAACA-CTGTT-GACTTTATCAGGCAACATTGTAGAA--AT--C--A---CTGCAAAG------T----TCTACCTA---------------------AG---------GGGTGGTTCATGCACTGCC--AA--AGCGA i canFam2.chr26 C 0 I 7 s loxAfr3.scaffold_113 93019 93 - 3408981 ATAAAAAAATA-CTTTT-GACTTTGTCAAGCAACATTATAAAACAAA--C--A---CTAAAAAA------A----TTTAAC-------------------------TTAAG----AAATGGTTTGTGCATTTTC--AA--TGAAA i loxAfr3.scaffold_113 C 0 I 5 s choHof1.scaffold_59997 6610 96 + 12755 AC-AAATAGTA-TTGCT-GATTTTACCAAACAACATTATACACAGAA--C--A---CAACCAAA------T----TCTCACTA---------------------AGTTAAG----GGATACATCATGAATTTTC--AA--AGGGA i choHof1.scaffold_59997 C 0 I 13 s xenTro2.scaffold_960 5581 56 - 281655 --------------------------------------GTAAAAAAT--G--A---TGGTATAT------G----TCCTCTT-------------------------TAAA----ACATG-TCCGTGTTTATtt--aa--aggag i xenTro2.scaffold_960 C 0 I 7 s fr2.chrUn 295827947 115 + 400509343 ---TTACAACA-----------TTTCTTTGCAgtacacaagaaaaaa--a--a---tgaaaagggg-GTTT----TCCAGCTGGAAACTTTCCAACTTTATTATAGCATGAAAGCAGAattttcagcatttctt--tt--CTATC i fr2.chrUn C 0 C 0 s gasAcu1.chrIV 25507164 97 + 32632948 ---AAAAAGTA----CC-GAC-TTGGTCTGGACTAAAAATGACAAAC--G--A---GGAAGA--------C----CAAAACCGGAGAC----------------GCCAAAGAAGAAGGCTTGTCAGGGGTTTTT--CC--TTAAA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr9 28014750 71 - 33213694 ---ACAAAGTA--------------------AGTGTAATTTACACAC--A--A---GCATGAG-------C----TGATGTTGGTAAC----------------AGCAAAG----TGTCTGCTTgggggtt-------------g i oryLat2.chr9 C 0 C 0 s danRer6.chr22 1572604 94 + 41415389 ---TAAAAAAA-----------TAGTCCCAGAATTAAAA--ATTGAC--A--G---TTTTGACATACTTTC----TCCATCATATAAT----------------AATAAAC----AAACTAAACAATTGTTTCT--AT--ATAAA i danRer6.chr22 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e equCab2.chr8 64131724 79 - 94057673 I a score=-270381.000000 s hg19.chrUn_gl000223 45293 110 + 180455 TA--TATAATGGTAAGTT-------CTCAATGTGAAGTTTTCCA-------------TGGGG----------ATAATGCAACTA---------GT--GAAACA-AAG---------------TCAAATACA---------TTT-CAAATGATA--------A---AATGGAAATCTTGTT------TCCTTATAca s panTro2.chr12 172549 110 - 135371336 TA--TATAATGGTAAGTT-------CTCAATGTGAAGTTTTCCA-------------TGGGG----------ATAATGCAACTA---------GT--GAAACA-AAG---------------TCAAATACA---------TTT-CAAGTGATA--------A---AATGGAAATCTTGTT------TCCTTATAca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210315 110 - 136387465 TA--TATAATGGTAAGTT-------CTCAATGTGAAGTTTTCCA-------------TGGGG----------ATAATGCAACTA---------GT--GAAACA-AAG---------------TCAAATACA---------TTT-CAAATGACA--------A---AATGGAAATCTTGTT------TCCTTATAca i ponAbe2.chr12 I 6 C 0 s rheMac2.chr11 183092 108 - 134511895 TA--AATAATGTTAAGTT-------CTCAATGTGAAGTTTTCCA-------------TGGGG----------ATAATGCAACTA---------GG--GAA--A-GAG---------------TCAAATACG---------TTT-CAAATGATA--------A---AATGGAAATCTTGTT------TCCTAATAca i rheMac2.chr11 I 6 C 0 s papHam1.Contig27513 245 107 + 933 TA--AATAATG-TAAGTT-------GTCAATGTGAAGTTTTCCA-------------TGGGG----------ATAATGCAACTA---------GG--GAA--A-GAG---------------TCAAATACA---------TTT-CAAATGATA--------A---AATGGAAATCTTGTT------TCCTAATAca i papHam1.Contig27513 I 6 C 0 s tarSyr1.scaffold_155717 1800 101 + 5780 TA--TATAATGGC---------------------AAGTTTCCCA-------------TGAAG----------ATAATATAACTG---------GT--CAAAGA-AGG---------------TGAAACACA-AA----TGTTT-CAAATGATA--------AAGCAATGGAAATATTGTC------CTCTAAT--A i tarSyr1.scaffold_155717 I 6 C 0 s otoGar1.scaffold_101698.1-26550 2288 121 + 26550 TA--TACAGTTATAGGTTCCACATCCCCAATGGGAAGGTGCCCG-------------TGAGG----------ACAGTGCAACTG---------GT--CGA--A-AGG---------------TAAAACACAAAA----TATTT-CAAATTACA--------AAATAATGAAAATCTGGTT------TCCTAAC--T i otoGar1.scaffold_101698.1-26550 I 1188 C 0 s tupBel1.scaffold_132008.1-22537 18619 111 + 22537 TA--TTTTATG-TAAGTC-------CCCAACAGGAAGTTTCCTA-------------CACAG----------TCAATGCAATGG---------GT--GAAAGA-AGG---------------TAAAACACA-AA----GATTT-CAAATGATG--------AAA-AGTAGAAGACTTGTT------TGCTAA---- i tupBel1.scaffold_132008.1-22537 I 8 C 0 s cavPor3.scaffold_248 210828 115 + 667635 AG--TAAAACAGTAGTAG-------GTTGCCAGCCAGTTTTCCA-------------CTTGG----------CTGAGGCAACAA---------GT--AAAAGA-TGG---------------TAAAACAAA-TA----TTCTT-TCAAAGAAA--------GAAAAAGGGGAATTGTATT------TCCTAA--CA i cavPor3.scaffold_248 I 5 I 157 s speTri1.scaffold_137548 54010 96 + 100761 TT--TAAAATAGG----------------------AATTTCTCC-------------CAGAA----------GTCATGGAGCTA---------TT--GAAAAA-AGG---------------TGAAACACA-AA----TATGT-CAAATGAAG--------AAATTACAGAAATCTTGTT------TCCT------ i speTri1.scaffold_137548 I 5 I 1 s oryCun2.chrUn0106 656560 106 + 1032594 TTA-CAAAATGGTAACTT-------ACCAATGGGAAATTTCTTG-------------CGTGA----------ATAATACAGTTG---------TTTATAAAGA-AAA---------------TGAAATACA-AA----CATTT-CAAAT-------------AATAATGGAAGTCTTGTT------T--------- i oryCun2.chrUn0106 I 5 C 0 s bosTau4.chr17 29952316 117 - 76506943 --TATAAAATGGTAAGCA-------CACATGGGAAC-TTTCTCT-------------TGTGC----------ATGATATGACAG---------TT--GAAAGGCAAG---------------TGAAACACA-AA----TATTT-CCAATGATG--------AAATAATAAAAAGCTTGTT------TTCTGATACC i bosTau4.chr17 I 7 I 10 s felCat3.scaffold_141210 70068 111 - 81011 --T-TACAATGAGAGGTT-------CACAACAGGA---TCACCA-------------TGTGC----------ACGGTGCAGCTG---------GT--GAAGAG-AGG---------------CAAAGCACA-GA----TACTT-CAAATGATG--------AAGCAGTGAAAGGCCTACT------TCCTAATA-- i felCat3.scaffold_141210 I 7 C 0 s canFam2.chr26 3175034 114 + 42029645 --T-TATCATGAAAGGTT-------CACAGTGGGA--GTCTCCA-------------TGTAG----------AGGATGCAACTA---------AT--GACACA-TGG---------------TGGAACACA-GA----TATTT-CAAATGATG--------CAACAATGAAAATCCTATT------TCCTAATACC i canFam2.chr26 I 7 C 0 s choHof1.scaffold_59997 6719 101 + 12755 -------AATGGTAAGCT-------CCCAATGGGATG-TTCCCA-------------TGTGG----------ATGACACAGTCC---------AT--GAAGGT-AAG---------------TCAAAGGCA-AA----TATTT-CAAATGAAA--------T---AAGGAAAATCTTTTT------TCC------- i choHof1.scaffold_59997 I 13 I 9 s xenTro2.scaffold_960 5644 103 - 281655 ---------ggttaaaaa-------ctcagtaagg-----tcta-------------tgta-------------aatacagcca---------ta--agcact-cat---------------agaaatgct-gagtcctctac-caaaagaaa--------c---acaggatttcttgtc------tccttttttg i xenTro2.scaffold_960 I 7 I 3 s fr2.chrUn 295828062 95 + 400509343 ------------------------------TGGTAAACAGTCCACCCATGATGA---TAGAC----------ATGATGCAA------------AT--GTATGA-ATA---------------CAAATTAAG-AC----CATTT-CAAGT------------AGATATTG------TCATTAACCTCTTTTCA---- i fr2.chrUn C 0 C 0 s gasAcu1.chrIV 25507261 144 + 32632948 ------------------------------TAAAAGAAATT----GCATGTTAAATTTAGACTTCTTCGCTAAAATTGAAGTAAATATAATCTGT--GCAGGA-CTATTGGGGACTACGGGTCAAGGAGAA-TA----AGGGT-CAAGTGGGAAGG-----AGATGCAGACAGATTCAGGTACATTTTTATA---- i gasAcu1.chrIV C 0 C 0 s oryLat2.chr9 28014821 108 - 33213694 ------------------------------gaaaaaaaa------------------tagac----------atacgGGA-------------GT--GGGGGA-AGATTGAGGGCagtaaa-caaggaaaa-aa----aggctACTGCTGAGTTGGTTCTTAGAAACAGTGAAACTCAGTAA----TTTAAA---- i oryLat2.chr9 C 0 C 0 s danRer6.chr22 1572698 88 + 41415389 ------------------------------CACAAAATGTCTCC-------------TAGAG--------------GGAAATA----------TC--ATTGGA-ATA---------------AAAAAAAAA-TATT--GATTT-TAATTGAAA--------AGCTACT-------TGATCAATCCCTTTTAA---- i danRer6.chr22 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e loxAfr3.scaffold_113 93112 5 - 3408981 I e equCab2.chr8 64131724 79 - 94057673 I a score=-14315.000000 s hg19.chrUn_gl000223 45403 62 + 180455 gatagttcctgacttaag-------aggatgtg--acttac-----agtttctcaacattacaatggtatccatac s panTro2.chr12 172659 62 - 135371336 gatagttcctgacttaag-------aggatgtg--acttac-----agtttctcaacattacaatggtatccacac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210425 60 - 136387465 gatagttcctgactt--g-------aggatgtg--acttac-----agtttctcaacattacaatgatatccatac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183200 62 - 134511895 gacagttcctgacttaag-------aggatgtg--acttac-----agtttctcaacattacaatggtatccatac i rheMac2.chr11 C 0 C 0 s papHam1.Contig27513 352 62 + 933 gatagttcctgacttaag-------aggatgtg--acttac-----agtttctcaacattacaatggtatccatac i papHam1.Contig27513 C 0 C 0 s tarSyr1.scaffold_155717 1901 54 + 5780 GATA--TCCTTACTT-AC-------ACGGTTTG--ACTAGC---------TTTCAA-ATTACAATGGTACCCATAC i tarSyr1.scaffold_155717 C 0 I 2143 s otoGar1.scaffold_101698.1-26550 2409 61 + 26550 AATAGTTCTCAACTTATG-------ATGGTTCA--ATGTTA-----AAATTCTGTATGGTACAATGGCA-CCATAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s xenTro2.scaffold_960 5750 43 - 281655 acttgttctt------ag-------ggtatgtg--gcttcc-----actctcagaaaaatcca------------- i xenTro2.scaffold_960 I 3 n 3 s fr2.chrUn 295828157 46 + 400509343 ------TTACCAATCTA--------TGGTGGTG-TGTTTAT-----ATGGTTCCG----------GGTGTCTGTGG i fr2.chrUn C 0 C 0 s gasAcu1.chrIV 25507405 63 + 32632948 ------TCGCAACACAAACATCACTTAACTGTG-GACCTGT-----AAATTTACAC-AACACTAAAATGTCATGAC i gasAcu1.chrIV C 0 C 0 s oryLat2.chr9 28014929 54 - 33213694 ------GAGCTACTCAAA-------TAATTAtgtgatctattgtaaaagcgttccc---------agtgtttttaa i oryLat2.chr9 C 0 C 0 s danRer6.chr22 1572786 54 + 41415389 ---ATTTTGCCTTTAAAA-------TAAGTGCA--CTTTAA-----AATAATTCAC-AAAA----TGTATCCTTGC i danRer6.chr22 C 0 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 54106 1 + 100761 I e felCat3.scaffold_141210 70179 0 - 81011 C e tupBel1.scaffold_132008.1-22537 18730 0 + 22537 C e oryCun2.chrUn0106 656666 0 + 1032594 C e loxAfr3.scaffold_113 93112 5 - 3408981 I e choHof1.scaffold_59997 6820 9 + 12755 I e cavPor3.scaffold_248 210943 157 + 667635 I e bosTau4.chr17 29952433 10 - 76506943 I e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3175148 0 + 42029645 C a score=-52076.000000 s hg19.chrUn_gl000223 45465 38 + 180455 a-ctactatttttcacctt----cagta---ttcaataattacatc s otoGar1.scaffold_101698.1-26550 2470 38 + 26550 AATTGTt--ttttcatttctatacagta---ttcaata---acata i otoGar1.scaffold_101698.1-26550 C 0 C 0 s papHam1.Contig27513 414 39 + 933 aactactatttttcacttt----tagta---ttcaataattacatc i papHam1.Contig27513 C 0 C 0 s rheMac2.chr11 183262 39 - 134511895 aactactatttttcacttc----cagta---ttcaataattacatc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210485 39 - 136387465 aactactacttttcacttt----cagta---ttcaataattacatc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172721 39 - 135371336 aactactatttttcacctt----cagta---ttcaataattacatc i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 656666 14 + 1032594 -AATACT--TGTTCAAT----------------------------- i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3175148 17 + 42029645 --------------------------TA---TCCAGTAATTACAGC i canFam2.chr26 C 0 I 4 s fr2.chrUn 295828203 23 + 400509343 -------------------ACCACTGCCTA-CCAAGTTGACAT--- i fr2.chrUn C 0 I 1 s gasAcu1.chrIV 25507468 24 + 32632948 -------------------AAAATGTTAATGTTCAGTAATGAC--- i gasAcu1.chrIV C 0 N 0 s oryLat2.chr9 28014983 23 - 33213694 -------------------attacggttat-tttattcaaaat--- i oryLat2.chr9 C 0 I 13 s danRer6.chr22 1572840 20 + 41415389 -------------------AAA---GTCAC-TTTATCTAAATT--- i danRer6.chr22 C 0 I 14 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 54106 1 + 100761 I e felCat3.scaffold_141210 70179 0 - 81011 C e tupBel1.scaffold_132008.1-22537 18730 0 + 22537 C e tarSyr1.scaffold_155717 1955 2143 + 5780 I e loxAfr3.scaffold_113 93112 5 - 3408981 I e xenTro2.scaffold_960 5793 3 - 281655 I e choHof1.scaffold_59997 6820 9 + 12755 I e cavPor3.scaffold_248 210943 157 + 667635 I e bosTau4.chr17 29952433 10 - 76506943 I e equCab2.chr8 64131724 79 - 94057673 I a score=31964.000000 s hg19.chrUn_gl000223 45503 62 + 180455 agatattcaacacctttttat---------------aaaatagat----gatgcatt-------------agaatgtgttctgagaatgtttaa s otoGar1.scaffold_101698.1-26550 2508 75 + 26550 agatattcaacactttattac---------------aaaatagga----tttgtgttatttaattttgccaacctgtatgttgagcacgtttaa i otoGar1.scaffold_101698.1-26550 C 0 C 0 s papHam1.Contig27513 453 62 + 933 agatatccaacaccttttgat---------------aaaatagac----gatgcatt-------------agaatgtgttctgagaatgtttaa i papHam1.Contig27513 C 0 C 0 s rheMac2.chr11 183301 62 - 134511895 agatattcaacaccttttgat---------------aaaatagac----gatgcatt-------------agaatgtgttctgagaatgtttaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210524 62 - 136387465 agatattcaacacctttttat---------------aaaatagat----gatgcatt-------------agaatgtgttctgagaatgtttaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172760 62 - 135371336 agatattcaacacctttttat---------------aaaatagat----gatgcatt-------------agaatgtgttctgagaatgtttaa i panTro2.chr12 C 0 C 0 s fr2.chrUn 295828227 70 + 400509343 AGGCTGTAATCAGTCTTTTCCTGCTGACACAGTGAGATATATCAA----AATATACT-------------A-------TACTGaaagtgtttaa i fr2.chrUn I 1 N 0 s gasAcu1.chrX 878933 59 - 15657440 AGGTGTTTAACAGCGTCTCAC---------------ATAGATAAG----AATTCACT-------------A---TTTGTGATGAAAAATGTCAC i gasAcu1.chrX N 0 I 11 s oryLat2.chr9 28015019 55 - 33213694 GTATTCTTGGACAtatttcct---------------gcagagcagcagtaattcatt-------------a-----------gaaatttgtctc i oryLat2.chr9 I 13 I 14 s danRer6.chr22 1572874 27 + 41415389 ------------ATCTTGCAC---------------ATTTTGCAA----TATACATG-------------A----------------------- i danRer6.chr22 I 14 I 11 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 54106 1 + 100761 I e felCat3.scaffold_141210 70179 0 - 81011 C e tupBel1.scaffold_132008.1-22537 18730 0 + 22537 C e oryCun2.chrUn0106 656680 0 + 1032594 C e tarSyr1.scaffold_155717 1955 2143 + 5780 I e loxAfr3.scaffold_113 93112 5 - 3408981 I e xenTro2.scaffold_960 5793 3 - 281655 I e choHof1.scaffold_59997 6820 9 + 12755 I e cavPor3.scaffold_248 210943 157 + 667635 I e bosTau4.chr17 29952433 10 - 76506943 I e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3175165 4 + 42029645 I a score=73239.000000 s hg19.chrUn_gl000223 45565 125 + 180455 ggtaggctacgctaagctatgatgttt------------ggtaagttgggtgtattaaatgcatttttgacttacaatgttttcaactta-------caatg----ggtttattgggaggtaaccccactgtaagtccaggatcatct s panTro2.chr12 172822 125 - 135371336 ggtaggctaggctaagctatgatgttt------------ggtaagttgggtgtattaaatgcatttttgacttacaatgttttcaactta-------caatg----ggtttattgggaggtaaccccactgtaagtccaggatcatct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210586 125 - 136387465 ggtaggctaggctaagctatgatgttt------------ggtaagttgggtgtattaaatgcatttttgacttacaatgttttcaactta-------caatg----ggtttattgggatgtaaccccactgtaagtccaggatcgtct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183363 125 - 134511895 ggtaggctaggctaagctatgatgttt------------ggtaggttgggtgtattaaatgcattttcgacttacaataatttcaactta-------caatg----ggtttattgggatgtaaccccattgtaagttcaggatcatat i rheMac2.chr11 C 0 C 0 s papHam1.Contig27513 515 125 + 933 ggtaggctaggctaagctatgatgttt------------ggtaggttgggtgtattaaatgcattttcgacttacaatgctttcaactta-------caatg----ggtttattgggatgtaaccccattgtaagttcaggattatat i papHam1.Contig27513 C 0 C 0 s otoGar1.scaffold_101698.1-26550 2583 114 + 26550 gccaagctaggctaagctatgatgcct------------ggtaagttaggtgtattaaatgcatttttgacat---atattttcaactta-------caatg----ggtttattaggacagaacccaattgtaag--------CATCT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s gasAcu1.chrX 879003 118 - 15657440 CTCAGTTTAGCTAGAGCTGTGAAAAGTTCGATGACATCAAACACGCTG---GCAACAGGAA-----GTGACGCAACACGCTTACAGTCAGCTGATATCAGTT----GCTTTATTGTTATATCATG------------------CATTT i gasAcu1.chrX I 11 C 0 s oryLat2.chr9 28015088 102 - 33213694 gactgttgatgcCAAG----GAAGCCTTCaccaaactaacattagcgg--tgcaacaaaaacg---gcga-gtaACA---TTGTAGCTATC------CAGTc----gttcagttttgagc-----------------------cagtt i oryLat2.chr9 I 14 C 0 s danRer6.chr22 1572912 111 + 41415389 CTCAACTTTTCTATAACTGTGATGTCTCTCTTAAATTTTGGAGTGATG---TTA------------GTGTCGTGTTA---TTCAGGCAAAGAAATGTTAATTACAGGCTCTCTTCAAAAGAAGT-------------------CATTT i danRer6.chr22 I 11 C 0 e myoLuc1.scaffold_117471 2992 193 - 4472 I e speTri1.scaffold_137548 54106 1 + 100761 I e felCat3.scaffold_141210 70179 0 - 81011 C e tupBel1.scaffold_132008.1-22537 18730 0 + 22537 C e oryCun2.chrUn0106 656680 0 + 1032594 C e tarSyr1.scaffold_155717 1955 2143 + 5780 I e loxAfr3.scaffold_113 93112 5 - 3408981 I e xenTro2.scaffold_960 5793 3 - 281655 I e choHof1.scaffold_59997 6820 9 + 12755 I e cavPor3.scaffold_248 210943 157 + 667635 I e bosTau4.chr17 29952433 10 - 76506943 I e equCab2.chr8 64131724 79 - 94057673 I e canFam2.chr26 3175165 4 + 42029645 I a score=114904.000000 s hg19.chrUn_gl000223 45690 66 + 180455 gTACTTTTCCAGGGACCACAGAAATTTGCTAGAAGATAAAATAGGCATCCTTGA--ATGT--CAAAAATG s tupBel1.scaffold_132008.1-22537 18730 67 + 22537 -TACTTGTCCAGGAATCACAGAAATTCGCAAGAAGGCAAACTGGGCTTCCTTGAAGATGT--CGGAAGTA i tupBel1.scaffold_132008.1-22537 C 0 C 0 s equCab2.chr8 64131803 67 - 94057673 -TACTCGTCCAGTAGTCACAGAAATTTGCTGGAAGGCAAAACAGGCTTCCTTGA--ATACATCAAAAATA i equCab2.chr8 I 79 C 0 s felCat3.scaffold_141210 70179 65 - 81011 ---CCTGTCCGGACATCACACAAATGTGCAGGAAGGTAAAATAGGCTTCCTTGA--ATACATCAAAAATA i felCat3.scaffold_141210 C 0 C 0 s otoGar1.scaffold_101698.1-26550 2697 68 + 26550 ATATTTGCCCAATAATCACAGAAATTATCTGGAAGACAAAATAGGCTTCCTTGA--ATGTACCAAAACTA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s papHam1.Contig27513 640 61 + 933 gTACTTTTCCAGTGACCACAGCAATTTGCTAG-----AAAATAGGCTTCCTTGA--ATGT--CAAAAATG i papHam1.Contig27513 C 0 C 0 s rheMac2.chr11 183488 61 - 134511895 gTACTTTTCCAGTGACCACAGAAATTTGCTAG-----AAAATAGGCTTCCTTGA--ATGT--CAAAAATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210711 66 - 136387465 gTACTTTTCCAGGGACCACAGAAATTTGCTAGAAGATAAAATAGGCGTTCTTGA--ATGT--CAAAAATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 172947 66 - 135371336 gTACATTTCCAGGGACCACAGAAATTTGCTAGAAGATAAAATAGGCATCCTTGA--ATGT--CAAAAATG i panTro2.chr12 C 0 C 0 s speTri1.scaffold_137548 54107 66 + 100761 GTACTTGTCCAGTAGTCACAGAAATGTTCAGGAAGGCAAAAGCCGCTTCCCTGA--ATAT--TCACAGAG i speTri1.scaffold_137548 I 1 C 0 s loxAfr3.scaffold_113 93117 51 - 3408981 -----------------ACTTAAATTTGCAGGAAGGCAAAATAGGCTTCCTTGAATATGT--CAAAAATA i loxAfr3.scaffold_113 I 5 I 1 s choHof1.scaffold_59997 6829 59 + 12755 -------TCCAGTAATCAAAGGAATTTGCAGGACAGCAAAATAGGCATCCTTGA--ATGT--CAAAAATA i choHof1.scaffold_59997 I 9 I 1 s oryCun2.chrUn0106 656680 52 + 1032594 --------------ATCACAAGAATTTGCAAGAAGGCAAAATGCAGTGCCCTGG--ATGT--GTAAAAAA i oryCun2.chrUn0106 C 0 I 2 s canFam2.chr26 3175169 42 + 42029645 --------------------------CACAGGAAGGCAAGACAGGCTTCTTTGA--ACACACCAAAAATA i canFam2.chr26 I 4 C 0 s bosTau4.chr17 29952443 53 - 76506943 ---------------TCACAGAAATCTGCAGGAAGGCAAAATAGGCTTCCTGGG--ATACATAAAAAATA i bosTau4.chr17 I 10 C 0 s gasAcu1.chrX 879121 35 - 15657440 -----------GTAATCTGTGCGGTT----AGGAAATGGATTAAGAACTC-------------------- i gasAcu1.chrX C 0 I 65 s oryLat2.chr9 28015190 33 - 33213694 -----------tccagctcagagg------aggaaaacaaagacgcacgt-------------------- i oryLat2.chr9 C 0 N 0 s danRer6.chr22 1573023 27 + 41415389 -----------GCACTTT------------TCCACACACAAAAAGAACAT-------------------- i danRer6.chr22 C 0 I 47 e myoLuc1.scaffold_117471 2992 193 - 4472 I e tarSyr1.scaffold_155717 1955 2143 + 5780 I e xenTro2.scaffold_960 5793 3 - 281655 I e cavPor3.scaffold_248 210943 157 + 667635 I a score=-17828.000000 s hg19.chrUn_gl000223 45756 41 + 180455 TTTTTCC-A---GCACAAAATTCCCTAATACTTTACATCTTCAGA----------------- s panTro2.chr12 173013 41 - 135371336 TTTTTCC-A---GCACAAAATTCCCTAATACTTTACATCTTCAGA----------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210777 41 - 136387465 TTTTTCC-A---GCACAAAATTCCCTAATACTTTACATCTTCAGA----------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183549 41 - 134511895 TTTTTCC-A---GCATAAAATTCCCTAATACTTTACATCTTCCAA----------------- i rheMac2.chr11 C 0 C 0 s papHam1.Contig27513 701 37 + 933 TTTTTCC-A---GCATAAAATTCCCTAATACTTTACATCTT--------------------- i papHam1.Contig27513 C 0 N 0 s otoGar1.scaffold_101698.1-26550 2765 39 + 26550 TTTTCTC-A---GCACAAAATCTCT--ATATTTTACATATTTTCA----------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_132008.1-22537 18797 39 + 22537 TTTTTTC-A---CCACAAAGTGGTCTA--AATTTACATCTTATTA----------------- i tupBel1.scaffold_132008.1-22537 C 0 N 0 s cavPor3.scaffold_248 211100 40 + 667635 TTTTTTA-A---TCACAAAATTCTCA-GTATTTCACATCTTCTGA----------------- i cavPor3.scaffold_248 I 157 C 0 s speTri1.scaffold_137548 54173 33 + 100761 -TATTTC-A---CCACAAAATTCATT-GTATTTTA------CTTA----------------- i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 656734 40 + 1032594 TTTCCTC-A---CCACAAAGTCCTTT-ATATTTTACATCTTCTAA----------------- i oryCun2.chrUn0106 I 2 C 0 s equCab2.chr8 64131870 41 - 94057673 TATTCCTCA---CCACAAAATTCTCT-ATATTTTACACTTTCTGA----------------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70244 37 - 81011 TATTTCTCAGGCACAAAAAAATCTAT-ACAT-------TTTCTGA----------------- i felCat3.scaffold_141210 C 0 M 384 s canFam2.chr26 3175211 34 + 42029645 TATTTTCCA---CCACAAAAATCCGT-ATTT-------TACATTA----------------- i canFam2.chr26 C 0 I 13 s bosTau4.chr17 29952496 41 - 76506943 TGGTTCTCA---CCACAAAATCTTCT-GTCCTTTATATTCTCTGG----------------- i bosTau4.chr17 C 0 C 0 s myoLuc1.scaffold_117471 3185 33 - 4472 --------a---ataCATCAATCTCT-CTTTCCCTTCATCTCCAA----------------- i myoLuc1.scaffold_117471 I 193 I 2 s choHof1.scaffold_59997 6889 40 + 12755 ATTTCTC-A---TCACAAAATTCTCT-ATATTTTACATTTTTCTA----------------- i choHof1.scaffold_59997 I 1 C 0 s loxAfr3.scaffold_113 93169 38 - 3408981 AGTTCTC-A---CAGCAAAATTCTT---TGTTTTACATTTTCTGA----------------- i loxAfr3.scaffold_113 I 1 C 0 s gasAcu1.chrX 879221 27 - 15657440 -----------------------------------CATTTTTAGCACCTCTGCTTGCTCAGC i gasAcu1.chrX I 65 C 0 s danRer6.chr22 1573097 19 + 41415389 -----------------------------------CATGAACAGAA-----ATTTGC---GA i danRer6.chr22 I 47 C 0 e tarSyr1.scaffold_155717 1955 2143 + 5780 I e xenTro2.scaffold_960 5793 3 - 281655 I a score=-84921.000000 s hg19.chrUn_gl000223 45797 25 + 180455 AATGTGATTTTTTA--------------A-------TAATTCATTT------------ s loxAfr3.scaffold_113 93207 22 - 3408981 ACAGTGACTCTT------------------------AAGTGGGTTT------------ i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6929 24 + 12755 A-AATGATTCCTTA--------------A-------GAGTGGGCTT------------ i choHof1.scaffold_59997 C 0 C 0 s myoLuc1.scaffold_117471 3220 15 - 4472 ACAAAAATTTTG--------------GAA----------------------------- i myoLuc1.scaffold_117471 I 2 C 0 s canFam2.chr26 3175258 32 + 42029645 ATGCTAACTCCT--------------AAATTTAACCTAGATGGTTT------------ i canFam2.chr26 I 13 C 0 s equCab2.chr8 64131911 25 - 94057673 AGAGTGACTGTT--------------AAA-------TAATTGGTTT------------ i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29952537 25 - 76506943 ATAGTGACTCTC--------------AAA-------TAACTAGTTT------------ i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 656774 22 + 1032594 ACAATTACTATTAA------------------------TCCAGTTT------------ i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_137548 54206 32 + 100761 AGAGTGAATTGTCACTCTT-------AGA-------TAACTGGTTT------------ i speTri1.scaffold_137548 C 0 C 0 s cavPor3.scaffold_248 211140 25 + 667635 AAAGTAACTTGTCA--------------A-------TAGTTGGTTT------------ i cavPor3.scaffold_248 C 0 C 0 s otoGar1.scaffold_101698.1-26550 2804 21 + 26550 ACAGTGAATCTTC-------------------------GTCAATTT------------ i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 183590 25 - 134511895 AATGTGATTTTTTA--------------A-------TAATTCATTT------------ i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210818 25 - 136387465 AATGTGATTTTTTA--------------A-------TAATTCATTT------------ i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 173054 25 - 135371336 AATGTTATTTTTTA--------------A-------TAATTCATTT------------ i panTro2.chr12 C 0 C 0 s gasAcu1.chrX 879248 30 - 15657440 ----------------AATGTA----AAG-------TGACTGATTTTATTCTTG-TTT i gasAcu1.chrX C 0 I 4 s danRer6.chr22 1573116 32 + 41415389 ----------------AATGTATACCAAA-------ATGCAAATTTTTTAA---ATTA i danRer6.chr22 C 0 n 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e xenTro2.scaffold_960 5793 3 - 281655 I a score=-20418.000000 s hg19.chrUn_gl000223 45822 36 + 180455 ATCCA----TCT---AA--TTTTTACAAGATATTTTAT-GCAACAC----------------- s loxAfr3.scaffold_113 93229 40 - 3408981 CTCCAACTATTT---TT--TTTTTACAAACTATCTTAC-GAAACAC----------------- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 6953 35 + 12755 CTCTG-----TG---TG--TTTTCACAAGACACATTAT-GAAACAC----------------- i choHof1.scaffold_59997 C 0 C 0 s myoLuc1.scaffold_117471 3235 29 - 4472 ---------------AA-TTAATTTTATAACATTTTCT-GAAATAC----------------- i myoLuc1.scaffold_117471 C 0 C 0 s canFam2.chr26 3175290 38 + 42029645 TTCCA----TCT---AGCTTTTTTTCAAGAGATTTTAA-GAAACAC----------------- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64131936 37 - 94057673 CTCCA----TCT---AA-TTTTTTACAAGGTATTTTAT-GAAATAT----------------- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29952562 36 - 76506943 CTTCA----TCT---AA--TTTTTACAGGATATTTTAG-AAAACAC----------------- i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 656796 21 + 1032594 CT-------------AA--TTTA---------TTTTAT-GAAACAC----------------- i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_137548 54238 26 + 100761 CCACA----ACT---AA--TTTT---------TTTTAA-C-AACAC----------------- i speTri1.scaffold_137548 C 0 C 0 s cavPor3.scaffold_248 211165 39 + 667635 CTCCA----TCTCTAAG--TTTTTACAAGGTATTTTAT-CAAACAC----------------- i cavPor3.scaffold_248 C 0 C 0 s otoGar1.scaffold_101698.1-26550 2825 36 + 26550 CTACA----TCT---AA--TTTTTACAAGACATTTTAT-GAAACAC----------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 183615 36 - 134511895 ATTCA----TCT---AA--ATTTTACAAGATATTTTAT-GCAACAC----------------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 210843 36 - 136387465 ATCCA----TCT---AA--TTTTTAGAAGATATTTTAT-GCAACAC----------------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 173079 36 - 135371336 ATCCA----TCT---AA--TTTTTACAAGATATTTTAT-GCAACAC----------------- i panTro2.chr12 C 0 C 0 s gasAcu1.chrX 879282 36 - 15657440 -----------------GCTTAACACAA----AGTTATACAAATAT------GTACTCAGCTC i gasAcu1.chrX I 4 C 0 s oryLat2.chr17 10913700 24 + 31848461 -----------------acttattGCAC----ATTTGC-taaatat----------------- i oryLat2.chr17 N 0 C 0 s danRer6.chr19 42233428 41 - 48708673 -----------------atctattttat----tttaat-ctattttgttggcgtacagagcta i danRer6.chr19 n 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e xenTro2.scaffold_960 5793 3 - 281655 I a score=-55261.000000 s hg19.chrUn_gl000223 45858 79 + 180455 A-AAAAGCATAACAGCAGCACAAAATATCCAT---GATA--CTTTATC-ACAGTAA---ATTAAAAT------AGTGACATTTGGGTTACA-TATC----------------- s panTro2.chr12 173115 71 - 135371336 A-AAAAGCA--------GCACAAAATATCCAT---GATA--CTTTATC-ACAGTAA---ATTAAAAT------AGTGGCATTTGGGTTACA-TATC----------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210879 80 - 136387465 A-AAAAGCATAACAGCAGCACAAAATATCCAT---GATA--CTTTATC-ACAGTAA---ATTAAAAT------AGTGGCATTTGGGTTACATTATC----------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183651 79 - 134511895 A-AAAAGCATAATAGCAGCACAAAATATCCAT---GATA--CTTTATC-ACAGTAA---ATTAAAAT------AGTGGTATTTGGGTTACA-TATC----------------- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 2861 76 + 26550 C-AAAAACATAACA---GCACAAAGTATTC------ATA--TTTCGTC-ATAGTAA---ATTGAAAT---CCAAGTTGTAGGTGGATTACC-TAAC----------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s cavPor3.scaffold_248 211204 74 + 667635 CACAAAACA--ACAGCAGCACAATATATTC------ATG--T---ATC-ATAGGAA---ATTGAAGTACAGTGCACTGT---TGGGTAT-A-TAGC----------------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54264 76 + 100761 C-CAGAACA--ACAGCAACACAGAGCAGCT------ATA--TTTCATC-ACAGCAG---TTCGGAG----GCAAGCTGTGCCTGGGTCTCA-CAGC----------------- i speTri1.scaffold_137548 C 0 I 99 s oryCun2.chrUn0106 656817 78 + 1032594 C-AGAAGTA--ACAGCAGCAAAAAACATCA------AGA--TCTCATCAACTGTAA---ATTAAAAT---ATAAGTGGTACTTGGGCTACA-CAGC----------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952598 82 - 76506943 C-AAAAACATAATAGCAGCACACAATATTCAT---GACA--ATTCATC-ACAGTAA---ATTAAAAT---ACAAGTTGTTCTTGGGTGACA-TAAC----------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64131973 82 - 94057673 C-AAACATGCAGCAGCAGCACTCAGCACGCAT---GACA--TTCTGTT-ACAGTGC---ACTGCAGT---CTAAGCTGCACTCGCGTTACA-CAGC----------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175328 74 + 42029645 A-AAAAAC---ATATTGGCACACAGCAT-CGT---GATA-----CATC-AGAGGGA---AGTAACAT---ACAAGCTATACGTG-GGGACA-CAGC----------------- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3264 74 - 4472 C-TAAAAT-----AGCAACTCACAGAATCCAT---GTTC-----CATC-GTAACAA---ATTAAAAT---GCAAGCTGTGCTTAGTTTACA-AAGA----------------- i myoLuc1.scaffold_117471 C 0 C 0 s choHof1.scaffold_59997 6988 79 + 12755 T-TGGAATATAACAGCAGCATACAGTATCC------ATA--TTTCATT-ATAGTAA---ATTAAAAT---ACAAATTGTACTTGGGTTACA-TAGC----------------- i choHof1.scaffold_59997 C 0 C 0 s loxAfr3.scaffold_113 93269 81 - 3408981 T-AAGAACATAATAGCAGCACACAGTATTCAT---GATG--TTTCATC-ATACTAA---ATTAACAC---AC-AGTTGTACTTGGGTTACA-CAGC----------------- i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_677 256012 79 - 553670 -agggagcaagatagcagctcccagtaggtatcagaata--gcactca-atagtaa------gaaat------AGTAAATTATTTGCTGTG-TAAC----------------- i xenTro2.scaffold_677 n 3 C 0 s gasAcu1.chrX 879318 89 - 15657440 ---AAAATGCAG-ATTAACAGACAATGAATATTAAAATAACCAGTAAA-ACATCCA---ACCTAAAT---ACTAACAACAAATTTCCTAAA-AAAACGTTT------------ i gasAcu1.chrX C 0 C 0 s oryLat2.chr17 10913724 85 + 31848461 -----aatacaa-aatag-----aacatttataacaata--caatata-agataca---acacaatt---ccaaatacagaat-------a-aaattgttttaatcttaatcA i oryLat2.chr17 C 0 C 0 s danRer6.chr19 42233469 81 - 48708673 ---aaaatgt-------------tatagttgtgtcaatg----tctta-atattcatgtacttgact---gTAGGCTTAAAAT-------A-CATTAGCTACAGTTATAGCta i danRer6.chr19 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I a score=-165100.000000 s hg19.chrUn_gl000223 45937 61 + 180455 ACT-----TAAGATACAT-ATATATATAC-----------------TATA-----TGG-------AGG-------CACCTCACTAAATGAGAAAAAGATTTAA s panTro2.chr12 173186 61 - 135371336 ACT-----TACGATACAT-ATATATATAC-----------------TATA-----TGG-------AGG-------CACCTCACTAAATGAGAAAAAGATTTAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 210959 61 - 136387465 ACT-----TAAGATACAT-ATATATATAC-----------------TATA-----TGG-------AGG-------CACCTCACTAAATGAGAAAAAGATTTGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183730 69 - 134511895 ACT-----TAAGATACat-atatatatatatataaa---------ataCA-----TGG-------AGA-------CATCTCACTAAATGAGAAAAAGATTTGA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 2937 88 + 26550 ACTGAAataaatatatat-gtatatatatacatacacacacacatatata-----tagatatataATG-------CATATCACTAAATGAGAAAAAGACT--A i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 78 59 - 57811 acg----------tatgt-gtatatatatGAATGA-----------TGTG-----TGG-------TGACATCTTTCATCTCACTAAATGAGAA---------- i tupBel1.scaffold_103331.1-57811 N 0 C 0 s gorGor1.Supercontig_0030964 0 58 + 8399 --------TAAGATACAT-ATATATATAC-----------------TATA-----TGG-------AGG-------CACCTCACTAAATGAGAAAAAGATTTGA i gorGor1.Supercontig_0030964 N 0 C 0 s cavPor3.scaffold_248 211278 58 + 667635 --------------ACTTAAGATATACACGCAAGA-----------CAAA-----TGG-------GAA-------AGGCTCAACAAATGAGAGAATTAAT-TT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 656895 46 + 1032594 --------------ACTT-AGATGTACTT----GA-----------CTAA-----AGG-------AGG-------CATCACACTAAATGGTGG--------TG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952680 59 - 76506943 ---------ACTTAAGAT-ACACACACTG----GA-----------TGCA-----TGG-------AGG-------TACCTCGTTACACAAGGAGGGCATTCTG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132055 48 - 94057673 ---------ACTGCACCT-G-----GCGT----GC-----------AGCA-----TGG-------AGG-------C------CTTCTTGGGGGACAGGCTGCA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175402 59 + 42029645 ---------ACTTGAAGT-ATGTCTATTT----GA-----------CGCA-----CGA-------AGG-------TGCCAAGCTGAGTGGGAGTAAGACTACA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3338 54 - 4472 ---------ACTTTACAC-A----TATTT----TA-----------TACA-----TGG-------AGG-------CATCAC-CAAAAAATGATAAAGATTTTG i myoLuc1.scaffold_117471 C 0 C 0 s choHof1.scaffold_59997 7067 60 + 12755 ---------ACTTAAGAT-ACACATACTT----GAA----------TGGA-----TAA-------AGG-------TGTCTCACTAGAAGAGAAAAAGATGCTA i choHof1.scaffold_59997 C 0 C 0 s loxAfr3.scaffold_113 93350 54 - 3408981 ---------ATTT--GAT-ATACATACTT----GAA----------TGTA-----TGA-------AGG-------TGT----CTAAAAGAGAAAAAGATGTTG i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_677 256091 36 - 553670 --------------------AGTGCAATC-----------------TATA-----TAT-------AAA-------TAGTACACTGAACAAGT----------- i xenTro2.scaffold_677 C 0 I 15 s gasAcu1.chrX 879407 44 - 15657440 -----------------A-AACAATATTT----AAA----------AAAAAGATCTTA-------AGG-------CATAA-------------AAACATTAAA i gasAcu1.chrX C 0 N 0 s oryLat2.chr17 10913809 54 + 31848461 -------------TAAAG-AACAAAATAT----AAG----------TAAAA----TTG-------ATT-------TATAACTCCACaat---taaagaataaa i oryLat2.chr17 C 0 I 5 s danRer6.chr19 42233550 53 - 48708673 -------------tatat-atatatatat----ata----------tata-----tat-------ata-------tatatatatatata---tatatatTGCG i danRer6.chr19 C 0 I 2 e speTri1.scaffold_137548 54340 99 + 100761 I e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I a score=-37653.000000 s hg19.chrUn_gl000223 45998 29 + 180455 TACAGCACTACT-----TTATTTCATTTAGTTTG s panTro2.chr12 173247 29 - 135371336 TACAGCACTACT-----TTATTTCATTTAGTTTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 211020 29 - 136387465 TACAGCACTACT-----TTATTTCATTTAGTTTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183799 29 - 134511895 TACAGCACTACT-----TTATTTCATTTAGTTTG i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3025 29 + 26550 CACAGCATTACT-----TACTTTCATTTACCTTG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 137 24 - 57811 -TCTGCAGTGC---------TTTCATTTAGTTTA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s gorGor1.Supercontig_0030964 58 29 + 8399 TACAGCACTACT-----TTATTTCATTTCGTTTG i gorGor1.Supercontig_0030964 C 0 C 0 s cavPor3.scaffold_248 211336 28 + 667635 TACAGCAAGACA-----TCCTTTCATGTAGGTG- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 656941 20 + 1032594 TACAGCA----C-----TGCTGTCATGTG----- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952739 25 - 76506943 CTCCAAGTTAA---------TGCCACTGAGCAGG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132103 25 - 94057673 CCCGGCGCTGC---------CTCGGTGTGGCCTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175461 23 + 42029645 --CAGCACTAC---------TGCCGTCTAGCCTA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3392 25 - 4472 TACAGCTCTAC---------TGCCACTTGGTTTG i myoLuc1.scaffold_117471 C 0 C 0 s loxAfr3.scaffold_113 93404 23 - 3408981 CACAGCACTATT-----TTCTATCATTT------ i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 18359 30 + 154172 CAACCTTCTAATG----TTCTGTCATTTAGTTTG i dasNov2.scaffold_7587 N 0 C 0 s choHof1.scaffold_59997 7127 29 + 12755 CACAGTAGGAAT-----TTCTGTCCTTTAGTTGG i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 256142 29 - 553670 TTAATAAATACC-----TGATTTGAAGTAATTCG i xenTro2.scaffold_677 I 15 C 0 s oryLat2.chr17 10913868 17 + 31848461 ------------aacagtcatttaaacaa----- i oryLat2.chr17 I 5 C 0 s danRer6.chr19 42233605 17 - 48708673 ------------CATAATTTTTCCGTATG----- i danRer6.chr19 I 2 C 0 e speTri1.scaffold_137548 54340 99 + 100761 I e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I a score=-242312.000000 s hg19.chrUn_gl000223 46027 185 + 180455 GGT-----GTT-------GTA-A-TGTA----GTTC--ACACAC-C-TTTATT-TTGC-----TCATTCA--G-------TTA--------TA---TATTACTATG----GTTAT------------TCTGTG-----GTTC----CTGCCTT-TGCATAT--TTATT------------TTATATAAACTGTT-------ACTCAGACT--C-TGAGGATGC-------AGAAGA--CTT-ACACAAT--GTTGGCTTCAGTTA--CTGAA-TAGAAAGGTCCATAAA----AACAAAAGA s panTro2.chr12 173276 185 - 135371336 GGT-----GTT-------GTA-A-TGTA----GTTC--ACACAC-C-TTTATT-TTGC-----TCATTCA--G-------TTA--------TA---TATTACTATG----GTTAT------------TCTGTG-----GTTC----CTGCCTT-TGCATAT--TTATT------------TTATATAAACTGTT-------ACTCAGACT--C-TGAGGATGC-------AGAAGA--CTT-ACATAAT--GTTGGCTTCAGTTA--CTGAA-TAGAAAGGTCCATAAA----AACAAAAGA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 211049 185 - 136387465 GGT-----GTT-------GTA-A-TGTA----GTTC--ACACAT-C-TTTATT-TTGC-----TCATTCA--G-------TTA--------TA---TAGTACTATG----GTTAT------------TCTGTG-----GTTC----CTGCCTT-TGCATAT--TTATT------------TTATATAAACTGTT-------ACTCAGACT--C-TGAGGACGC-------AGAAGA--CTT-ACATAAT--GTTGGCTTCAGTTA--CTGAA-TAGAAAGGTCCATAAA----AACAAAAGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 183828 185 - 134511895 GGT-----GTT-------GTA-A-TGTA----GTTC--AAATAT-C-TTTATT-TTGC-----TAATTCA--G-------ATA--------TA---TATTACTATG----GTTAT------------TCTGTG-----GTTC----CTGCCTT-TGCATAT--TTATT------------TTATATAAACTGTT-------ACTCAGACT--C-TGAGGATGC-------AGAAGA--CTT-ACATAAT--GTTGGCTTCAGTTA--CTGAA-TAGAAAGGTCAGTAAA----AACAAAAGA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3054 186 + 26550 AGGACTGAGTT-------ATATG-TATA----ATTC--ACATAC-C-TTTCTT-TTGC-----TCCCACGGTG-------TCA--------TA---TTTCACTACT----GTTAC------------TCTGTG-----GTTC----CTGGCTT-TGCATAT--TTA--------------TTATATAGACTGTT-------GTTTGGACT--C-AGAGGAT---------ATAAGA--CTT-ATGTGAT--GTTGGTTTCGGTTA--TTGAA-GAAAAAGGTCAAT-------AACAAGAGA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 161 177 - 57811 AGT-----GTT-----GAGTG-C-TATA----GTTT--ACTCGC-C-TATCCT-CTGC-----TCATTCT-TA-------TCA--------TG---AATCACTATT----GCTAT------------TTTGTG-----GTAC----CTGCATT-TATATAC--TTATTAA-CAGGA--TCATATATAAACTGCT-------TCTCAGACT--C-TAAGGGTAC-------AGAAAA--T-------------TTGGTTTCAGCTA--CTGAG-GAGAAAG--------------ATAAGAGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s gorGor1.Supercontig_0030964 87 181 + 8399 GGT-----GTT-------GTA-A-TGTA----GTTC--ACACAT-C-TTTATT-TTGC---------TCA--G-------TTA--------TA---TATTACTATG----GTTAT------------TCTGTG-----GTTC----CTGCCTT-TGCATAT--TTATT------------TTATATAAACTGTT-------ACTCAGACT--C-TGAGGATGC-------AGAAGA--CTT-ACATAAT--GTTGGCTTCAGTTA--CTGAA-TAGAAAGGTCCATAAA----AACAAAAGA i gorGor1.Supercontig_0030964 C 0 C 0 s cavPor3.scaffold_248 211364 158 + 667635 AGT-----GCTAA---GGAGA-A-CATA----GTTC--ACATAC-C----CTT-CTGC---------TCA--C-------TCA--------AA---CATCAATATT----GCTAC------------TGTG-------GTTC----TAGTCTT-TG----------------AAAA--CTTAACAGAA----TT-------TCTCAGATT--C-TGTGAGTGT-------AGGAAA--CTA-ATAAA-T--GTTCAACTCT-TTA--CTAAA-CA--GAGAGTAAAAA-------------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54439 170 + 100761 AGT-----G-------GAGGA-C-TGCA----GCTC--AC-CAC-C---CCTT-CTAC-----------A--G-------TCA--------GT---ATCTTGTATC----ACTGT------------GCTACTCTTG-GTTC----CTGCCTC-TG--------CATATA-CAAGA--TTTTATATAAAATGTT-------TCTCAGGCT--C-TGAGGGCAC-------TGGAAATGTTA-ACA-----------------TTA--CTGAA-GAAGAAGGTCAATATT----AACAACCAA i speTri1.scaffold_137548 I 99 C 0 s dipOrd1.scaffold_79724 56 161 + 3406 -----------------------------------------------TTTCTT-TTTC---------TAA--T-------TCA--------CT---ATCAAATATT----TCTAG------------TGCATTATGATGCTC----TTACCTT-CATGTAC--TGATTAA-CAAGA--CTCAATAAAA--TGTT-------TTCCAAACT--CTTAAGAACGC-------AAGAAA--CTA-ATAAA-----ATAATTTCTGTTG--GTGAT-GA--GAGGTCAATAAT-------AAGCAA i dipOrd1.scaffold_79724 N 0 C 0 s oryCun2.chrUn0106 656961 162 + 1032594 AGT-----GCT-----GAGTA-A-CACA----GCTG--CCATAC-T-TCTCTT-TTGC----------------------TCA--------CA---GTCTATCACT----GTTAT------------TCTGTG-----GTTC----TTGCCCT-TGCATAA--CTATAAA-CAGAA--CTTTATATAA--ACTT-------TCTCGGACT--C-TGAAGATGC-------AGAAGA--CTT-A-------------------TTA--CTGAA-----GAGTTAAATAAT-------AAAAGG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952764 175 - 76506943 AGT-----GCA-------GAG-C-CACA----GTGC--TCACTC----------------------------C-------TCA--------CA---ATTCACTCGT----ACCAT------------TCTGCA-----G-TT----CTACACT-AGAATAC--TTATTAA-CAAGG--TTTTATATAAACTGTT-------TCTCAGAGT--C-T-AGGATCC-------AAAAGA--CTTTATATAAT--GTTGGCTTTTGCTA--CTAAA-GAGAAAGGTCACTGAC----AACAATAGA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132128 188 - 94057673 AGT-----GCC-------AAG-T-CACA----GTTC--TCGCCCGC-CTCCTT-CGGC---------TCA--C-------TCAG-------TG---TGTCAGGGCAGAGTGCTGT------------TGTGTG-----GCTC----CTG-CTT-TGAATAC--TTGTTAA-CTGGG--TTTTATAGAAACTGTT-------TCTCAGACT--C-TGAGGATGC-------ACAAGA--CTTTACACAAG--CTTGGCTTTTGTTA--CTGAA-GAGAAAG--------T----AACAACAGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175484 185 + 42029645 AAT-----GTT-------GAG-T-GATA----GTTCATACACCTGC-TTTCTT-TTGA---------TCA--C-------TCA--------TG---AGTCACTATA----GCTAG------------GCTGTG-----GCTC----CTACCTT-TTAATAC--TTATTAA-AAAGA--TTTTATAT-AATTGTT---------TCAGACT--C-TCAGATTGC-------AC---A--CTTCATATAAT--GTTGGCTTTCGTAA--CTGAA-GAGAAAGGGCA---AC----AACAACAGA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3417 195 - 4472 AAT-----GCT-------GAG-T-AA-A----ATGG--TCACACAC-CTTCCT-TTGC---------TCA--C-------TCAGCATATCATG---AGTCACTATT----GAAGT------------TCTGTG-----G-TA----CTGCCTT-TGAATAC--TTATAAA-CCGGGTTTTTTATATAAACTGAC---------TCAGACT--C-TGAGGACGC-------AGAAGA--CTTTATATAAAACGTTGGCTTCTGATA--CTGAA-GTG--AGGTCA---GT----AACAACAGA i myoLuc1.scaffold_117471 C 0 C 0 s loxAfr3.scaffold_113 93427 170 - 3408981 ------------------------TAT--------------------CATCTT-GTGC-----TTATTCT--G-----TATCA--------TG---TATAAGTACT----GGTAT------------TCTGTG-----GTTC----TTGCATT-TGCATGT--TTATTAA-CAGTG--TTGTATATAAACGATT-------TCTCAGACT--C-TGAGATTGT-------ACAAGA--C--TATATTGT--GCTGGCTTTTATTA--CTGAA-GAGAAAGAACCGT-------AACAATAAA i loxAfr3.scaffold_113 C 0 I 503 s dasNov2.scaffold_7587 18389 199 + 154172 AGT-----GAT-----GAGTA-ATTATG----GTTC--ACACAC-C-TTTTTT-TT-------TTTTTTG--GCTCACTATCA--------AGCATCATCAGTATT----GCTGT------------TCTATG-----GCAC----TTGCTCT-TGCAAAC--ATATTAATAGGAG--TTTTAT----ATTGAA-------TCTAAGACT--C-TGAGGATGC-------AAAAGA--CCTTATATAAT--GTTGGCTTCTACTA--CTGAA-TAAAAGA-TCAAT-------AACAATAGA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 7156 191 + 12755 CGT-----GCT-----GAGTA-A-TATG----GTTC--ACACAC-C-TTTCTT-TTGC-----CCGTTTG--G-----TATCA--------AG---TATCAGCACT----GCTAC------------TCTATG-----GTTC----CTGCCTT-TGCATAC--TTGTTAA-AGGGG--TTTTAT----ACTGTG-------TCTCAGACT--C-TGAGGATGC-------ATAAGA--CTTTATATAAT---TTGGCTTCTATTA--CTGAA-TATAACAGTCAGT-------AACAATAGA i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 256171 205 - 553670 -----------AGTTTGTGAG-A-TCTA----GCAC--AAAAAA-CACTTGAA-TCGCAGTAAACATTAA--A-------TTA--------CA---AA-CATTATA----TCTGC------------CCCATC-----GTTTTCAGCTGCTAC-TGAATTTGGCTAATAA----------TAACAAACACTCAT-------TTTGCAACT----GAAAAACAT-------ATAAAC--CAATATAAAAT--GTACCGATCAATCAGCCTGAC-ACGTCACGTCCCGACTTTTATACAGAAAA i xenTro2.scaffold_677 C 0 I 2 s oryLat2.chr17 10913885 155 + 31848461 ------------------aaa-c-tgcacGGAGTGT--AAATAA-A-ATCTTA-TCGT--------------G-------TTC--------CG---TTATATTACA----TTCAG-------------------------AT----TTTCTTTAGTTCTGT--TCTAT----------CTACATAAATACCgataaaagaaacacaaactagA-TCTAAATTG-------ATGAAA--TTT-ACAAA------TAGATTCA-TAA--CAAAC-CAACA------------------------ i oryLat2.chr17 C 0 C 0 s danRer6.chr19 42233622 173 - 48708673 ------------------GGA-C-TGTATGG-GTCC--CAATAA-A-TTTGTACTctt--------------g-------att--------ta---tacttctgcg----tcgagtgatcggcatgaccaatg-----gcac----ctgccttgcgcatag--tc-------------atgcatatatacttct---------gcgtgct--g-tttgtgttgctttgcaagagca--ctt-ccaaaac--gctagCTTTG-TTA--CAAATATTACA------------------------ i danRer6.chr19 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I a score=-262765.000000 s hg19.chrUn_gl000223 46212 64 + 180455 CCCC----T-TATGTATGTCT-------ATAAG---TTAA-AAGAA------ACGGG-------TTAT---CACTTAAG-GTACTT-ATTC-----ATGT---AGT--------------- s panTro2.chr12 173461 64 - 135371336 CCCC----T-TATGTATGTCT-------ATAAG---TTAA-AAGAA------ATGGG-------TTAT---CACTTAAG-GTACTT-ATTC-----ATGT---AGT--------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 211234 65 - 136387465 CCCC----T-TATGTATGTCT-------ATAAG---TTAA-AAGAA------ATGGG-------TTAT---CACTTAAG-GTACTTAATTC-----ATGT---AGC--------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184013 67 - 134511895 CCCC----T-TATGTATGTCT----ATAATAAG---GAAA-AAGAA------ATGGG-------TTAT---CACTCAAG-GTACTT-ATTA-----ATGT---AGC--------------- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3240 76 + 26550 CCCT----TCTAT---TGTCAACAGATAATAAG---CAAAGAATAA------ATGTG-------GTATTGCCATTTAAG-TTACTA-ATTC-----AGATATAAGC--------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 338 66 - 57811 CCAC----C-TATATATGAAA----ACAAGAAG---GAAA-AAGGA------AAGTGGC----ATTAT---TACTTAAG-CAAATT-ATT---------T---GGT--------------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s gorGor1.Supercontig_0030964 268 64 + 8399 CCCC----T-TATGTATGTCT-------ATAAG---TTAA-AAGAA------ATGGG-------TTAT---CACTTAAG-GTACTT-ATTC-----ATGT---AGT--------------- i gorGor1.Supercontig_0030964 C 0 C 0 s cavPor3.scaffold_248 211522 68 + 667635 ------------CATATGCAAACAAATATTAAGGATAAAA-GAATT------GTGG---------TAT---TATTTAAT-CTACTT-ATTC-A-GCAACT---GGT--------------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54609 77 + 100761 TCTC------TGTAGATGTCAACAAACAATAAG---AAAA-AAGAA------ATGAGTT----ATTAT---TGCCTAAT-CTATTG-ATTCTG-GCAAAA---AGC--------------- i speTri1.scaffold_137548 C 0 C 0 s dipOrd1.scaffold_79724 217 75 + 3406 TCCC------TGTATATGCCAATAAATGATAAG---AAAA-AAATT------GTAAG-T----ATTAT---TGCTTAAT-CTACCT-GTTC-A-GCAATG---AGC--------------- i dipOrd1.scaffold_79724 C 0 C 0 s oryCun2.chrUn0106 657123 64 + 1032594 TCTC----T-TATATGTGTCAACAAATAAGGGA---AAAA-A-----------------------TAT---TACCTAAG-CTATTT-ATTC-A-GCAATA---AGC--------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29952939 68 - 76506943 G-CC----T-TTTATAAACTAACAAATCATAAG---GAAA-------------TGTGTT----GATAT---TAC--ATG-CTACTT-ACTG-A-GCAGTA---AGA--------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132316 78 - 94057673 CCCC----T-TTTATATGCCAACAAACCGTAAG---GAAA-AAAGAG-----ATGTGGT----GTTAT---TACTTAAG-CTACTC-ATTT-A-GCAATA---AGA--------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175669 73 + 42029645 TCCC----T-TTTATATGCCAATAGGCCATAAG---GAAA-AAAGA----------TGT----GTTAT---CACTTAAG-CTGGAT-ATTT-A-GCAGTA---AGA--------------- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3612 66 - 4472 CCCC----T-GTTACACATCAACAAACCATAGG---GAAA-AGAGA-------TGTGGT----TTTAT---TATT------------GTTG-A-GCAATA---AGG--------------- i myoLuc1.scaffold_117471 C 0 C 0 s choHof1.scaffold_59997 7347 77 + 12755 CCTC----T-TACATATGCCAACAAATAAGAAA---AAAA-AGAGA-------TGTGGT----ATTAT---AACTTTGATCTTATA-GCTT-G-GTATTA---TAA--------------- i choHof1.scaffold_59997 C 0 I 14 s dasNov2.scaffold_7587 18588 75 + 154172 CCTC----T-TAAATACACCAAGAAACAATAAG---GGAA-AGAGA-------T-TAGT----GTTAT---AACTTAGG-CTACTT-TCTT-A-GCATTA---AGC--------------- i dasNov2.scaffold_7587 C 0 I 15 s xenTro2.scaffold_677 256378 66 - 553670 -CCCAGAAT-ATTATCTGTTG-------GTGGG---GGGC-AGAGA-----------------TATAT---TCCAGTGT-CTGGGA-ACTA-A-GCATGA---AAT--------------- i xenTro2.scaffold_677 I 2 C 0 s oryLat2.chr17 10914040 49 + 31848461 ----------------------------------------------GCCATTATGT-------TTTAT---TACCAGAG------A-ATTT-ACACATTT---GTTAAAATGT-----Agt i oryLat2.chr17 C 0 C 0 s danRer6.chr19 42233795 63 - 48708673 ----------------------------------------------CTCAATACGTAACGATCCTTGT---TGCGTAAA-CT--TA-GTTT-A-ACACTT---ATGTAAGTGGGTAAAAAC i danRer6.chr19 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e loxAfr3.scaffold_113 93597 503 - 3408981 I a score=-166449.000000 s hg19.chrUn_gl000223 46276 13 + 180455 -------CATGTTAC-------AT----------------------------------------------------------------------------------GAG s panTro2.chr12 173525 13 - 135371336 -------CATGTTAC-------AT----------------------------------------------------------------------------------GAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 211299 13 - 136387465 -------CATGTTAC-------AT----------------------------------------------------------------------------------GAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184080 13 - 134511895 -------CATGTTAC-------AT----------------------------------------------------------------------------------GAC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3316 13 + 26550 -------CATGTTCT-------GT----------------------------------------------------------------------------------CAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 404 6 - 57811 -------GA--------------T----------------------------------------------------------------------------------AAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s gorGor1.Supercontig_0030964 332 13 + 8399 -------CATTTTAC-------AT----------------------------------------------------------------------------------GAG i gorGor1.Supercontig_0030964 C 0 C 0 s cavPor3.scaffold_248 211590 6 + 667635 -------TATG------------------------------------------------------------------------------------------------AG i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54686 13 + 100761 -------CATGTTAA-------AT----------------------------------------------------------------------------------CAA i speTri1.scaffold_137548 C 0 C 0 s dipOrd1.scaffold_79724 292 9 + 3406 -------CATGC-----------T----------------------------------------------------------------------------------CCA i dipOrd1.scaffold_79724 C 0 C 0 s oryCun2.chrUn0106 657187 4 + 1032594 -------CA--------------------------------------------------------------------------------------------------AA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29953007 13 - 76506943 -------CATGTCCT-------AT----------------------------------------------------------------------------------GAG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132394 13 - 94057673 -------CATGTTAT-------AT----------------------------------------------------------------------------------CAG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175742 13 + 42029645 -------TGTGTTAT-------AT----------------------------------------------------------------------------------CAG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3678 17 - 4472 -------CATATGATG---TTAAT----------------------------------------------------------------------------------TAG i myoLuc1.scaffold_117471 C 0 C 0 s loxAfr3.scaffold_113 94100 13 - 3408981 -------CCTGTTAT-------AT----------------------------------------------------------------------------------CAA i loxAfr3.scaffold_113 I 503 C 0 s dasNov2.scaffold_7587 18678 95 + 154172 -------tttttttt-------ttttttaaggagggaccatggattgaacccaggacctcctgcttgggaagcaggcactcaaaccactgagctacaactgctccACAG i dasNov2.scaffold_7587 I 15 C 0 s choHof1.scaffold_59997 7438 13 + 12755 -------CCTATATT-------AT----------------------------------------------------------------------------------CAT i choHof1.scaffold_59997 I 14 C 0 s xenTro2.scaffold_677 256444 12 - 553670 ---------------GAGGTCCCT----------------------------------------------------------------------------------CAG i xenTro2.scaffold_677 C 0 T 37062 s oryLat2.chr17 10914089 13 + 31848461 caaattttaaatt------------------------------------------------------------------------------------------------ i oryLat2.chr17 C 0 I 2 s danRer6.chr19 42233858 13 - 48708673 TATATTGCAACTT------------------------------------------------------------------------------------------------ i danRer6.chr19 C 0 I 12 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I a score=-51707.000000 s hg19.chrUn_gl000223 46289 52 + 180455 TTTCCattttttat----------attatt-gtt-aaaaaataaaa--aCCAGTGGTGTGTA------G------TGT s panTro2.chr12 173538 52 - 135371336 TTTCCattttttat----------attatt-gtt-aaaaaataaaa--aCCAGTGGTGTGTA------G------TGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 211312 51 - 136387465 TTTCCattttttat----------attatt-gtt-aaaaaat-aaa--aCCAGTGGTGTGTA------G------TGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184093 51 - 134511895 TTTCCATTCTCTAT----------ATTATT-GTT-AAAAAATAAAA--ACCAGTGGTGTGTA------G------TG- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3329 50 + 26550 TTTCCATT-TTTAT----------ACTATT-GTT-AAAATAGAAAA--ACCAGTCGAACATA------G------TG- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 410 43 - 57811 TATCCATT-TTTAT----------AATACT-GTT-AACACAGAAAA--GCCAGTGGTG-------------------- i tupBel1.scaffold_103331.1-57811 C 0 I 282 s gorGor1.Supercontig_0030964 345 52 + 8399 TTTCCattttttat----------attatt-gtt-aaaaaataaaa--aCCAGTGGTGTGTA------G------TGT i gorGor1.Supercontig_0030964 C 0 C 0 s cavPor3.scaffold_248 211596 47 + 667635 TTTTTCTT-TTCAT----------ATAA----TT-AAAGTAG--AA--A-CAGTAG-AGATA------GACAATA--- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54699 45 + 100761 TTACCCTT-TTCAC----------AGTA----TT-AAGACAGAAAA--GCCAGTGACATGTA------G--------- i speTri1.scaffold_137548 C 0 C 0 s dipOrd1.scaffold_79724 301 44 + 3406 TTTCAATT-TTCAT----------GGTA----TT-AAAATAGAAAA--A-CAATAGTAGATA------G--------- i dipOrd1.scaffold_79724 C 0 C 0 s oryCun2.chrUn0106 657191 43 + 1032594 TTATATGT-TTCCA----------AATT----TT-ATAGTACAGAA--A-CAGGAA-AATCA------G--------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29953020 50 - 76506943 TTACCATT-TTTAT----------AGTATT-ATT-AAAATAGAAAA--ACCAGTGGCACATA----GTA--------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132407 50 - 94057673 TTGCCATT-TTTAT----------AGTATC-ATT-ACAATAGAAAA--ACCGGCTGCATGTG----TTG--------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175755 49 + 42029645 CTACCATT-TTCAT----------TGTATC-ATT-GAAACAGAAAA--ACCAGCAGCATGTA-----TG--------- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3695 47 - 4472 TTGCCATT-TCTAT----------AGTATC-AGC-AAGACAGAAAA--G-CAGTGGCATGTG------G--------- i myoLuc1.scaffold_117471 C 0 C 0 s loxAfr3.scaffold_113 94113 42 - 3408981 CTACCACT-CTTAT----------AA---------AAAACA-ATAA--ATCAGTGGCACATA------G------TG- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 18773 50 + 154172 TTACCATT-TTTAT----------AATATT-GTT-AAAGTAGAAAA--ACCAGTGGTATGTA------A------TA- i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 7451 38 + 12755 TTACCATT-TTTGT----------AACATT-ATTAAAAATACATAA--ATCA-------------------------- i choHof1.scaffold_59997 C 0 M 365 s fr2.chrUn 102972240 53 - 400509343 TTTCCATT-TTAAC----------AGCCTC-TTT-AACACATCACATTCTCAGTACTGTTTTGTCT------------ i fr2.chrUn N 0 C 0 s oryLat2.chr17 10914104 42 + 31848461 aacacatt-tcaa---------------tC-TTC-ATCAGG--AGATTACCATAGCTGTgtt---------------- i oryLat2.chr17 I 2 C 0 s danRer6.chr19 42233883 64 - 48708673 AATACATT-TTTATGAAACTACGAAGTGTCGTTG-AATGAAGAATATGAACAGAGCTGTGTTCAAC------------ i danRer6.chr19 I 12 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e xenTro2.scaffold_677 256456 37062 - 553670 T a score=252173.000000 s hg19.chrUn_gl000223 46341 57 + 180455 ----------TGTC---TTCACAGACATCAGAGGCACT-----------A-AAAGG-CATATGCATTTCATACTCCCAATTAC s dasNov2.scaffold_7587 18823 58 + 154172 ----------TGCC---TTAACAGAAATTAGAGGCACT-----------CTTAAGG-CATATGCATTTCATCCTCTCAATTAC i dasNov2.scaffold_7587 C 0 I 5 s loxAfr3.scaffold_113 94155 48 - 3408981 ----------TGTC---TTGACAGACATCAGAGGCACT-----------A-CAGGG-CAACTG---------CTCCCAATTAC i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_117471 3742 57 - 4472 ----------TGTC---TTGACAGACATCAGCGGCCCT-----------A-CAAGG-CATGTGCATCTCGTGCTTCTAATTAC i myoLuc1.scaffold_117471 C 0 C 0 s canFam2.chr26 3175804 53 + 42029645 ----------TGTC---CT----GACATCAGAGGCACT-----------A-CCAGG-AATGTGCATTTCATGCTCACAATCAC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64132457 58 - 94057673 ----------TGTC---TTCACAGACATCAGGGGCACT-----------A-CAAGGCCACGTACATTTCATGCTCCCAATTAC i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29953070 57 - 76506943 ----------TGTC---TTGATAGACATCAGAGGCACT-----------A-CAAGG-CATGTACATCTCATGCTCCCAATTAC i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 657234 57 + 1032594 ----------TGGT---ATGAGAGACATCAGAGGCACG-----------A-TATGA-TATATGCACTTCATGCTCTCAATTAC i oryCun2.chrUn0106 C 0 C 0 s dipOrd1.scaffold_79724 345 51 + 3406 ----------TGTT---TTGACATATATCAGAGGCACT-----------A-----G-GATATACATTTGATGCCATTAACA-- i dipOrd1.scaffold_79724 C 0 C 0 s speTri1.scaffold_137548 54744 55 + 100761 ----------TGTC---TTGACACA--TCAGAGGGACC-----------A-TAAGC-TACATATGCTTCACGCTTTCTGCAAC i speTri1.scaffold_137548 C 0 C 0 s cavPor3.scaffold_248 211643 53 + 667635 ----------TGTC---TTGACTTAC-CAAAAGACACT-----------A-TAAGG-CATACACATTTCATGCTCCCAAT--- i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 735 56 - 57811 ----------TGTC---TTGAC-GAAATCAGAGGCACC-----------A-TCAAG-TATAAGCATCTTGTGCTCTCAACTAC i tupBel1.scaffold_103331.1-57811 I 282 C 0 s otoGar1.scaffold_101698.1-26550 3379 57 + 26550 ----------TATT---TTGACAGACATCATAGGCACT-----------A-TAAGG-TATACGCATTTCATGTTCCCAATTAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s panTro2.chr12 173590 57 - 135371336 ----------TGTC---TTCACAGACATCAGAGGCACT-----------A-AAAGG-CATATGCGTTTCATACTCCCAATTAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 397 57 + 8399 ----------TGTC---TTCACAGACATCAGAGGCACT-----------A-AAAGG-CATATGCATTTCATACTCCCAATTAC i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211363 57 - 136387465 ----------TGTC---TTCACAGACATCAGAGGCACT-----------A-AAAGG-CATATGCATTTCATACTCCCAATTAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184144 57 - 134511895 ----------TGTC---TTCACAGACATCAGAGGCACT-----------A-TAAGG-CATATGCATTTCATAATCCCAATTAC i rheMac2.chr11 C 0 C 0 s fr2.chrUn 102972293 69 - 400509343 TGTACATAAAtatg---tttgtgtatttaaatgaaACTTCT--------G-CGGAA-GATTTGAAATGCATAATGTC-ATTAC i fr2.chrUn C 0 C 0 s oryLat2.chr17 10914146 65 + 31848461 --taattacatatt---tttagATACATGTGTACAACTACTAATCacaca-caaaa-gaggaaaaatcc-----------tAC i oryLat2.chr17 C 0 C 0 s danRer6.chr19 42233947 62 - 48708673 TGTGCGCATACACTAACATCCGGGAAAAAAGTAGAGTTTGG--------G-CTTGC-AACTCCGAATTT-----------AAC i danRer6.chr19 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e xenTro2.scaffold_677 256456 37062 - 553670 T e choHof1.scaffold_59997 7489 365 + 12755 M a score=-94270.000000 s hg19.chrUn_gl000223 46398 60 + 180455 ATTAA---ATT---ATAGGTAAGTCCAAAACA---C-----------------------------------------------------------------------AAAACAT-----ACGTGACACTAGAAGATAA--GCCACAA s rheMac2.chr11 184201 60 - 134511895 ATTAA---ATT---ATATGTCAGTTCAAAACG---C-----------------------------------------------------------------------AAAACAT-----ATGTGACACTAGAAGATAA--GCCACAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 211420 60 - 136387465 ATTAA---ATT---ATATGTAAGTCCAAAACA---C-----------------------------------------------------------------------AAAACAT-----ATGTGACACTAGAAGATAA--GCCACAA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 454 55 + 8399 ATTAA---ATT---ATAGGTAAGTCCAAAACA---C-----------------------------------------------------------------------AAAACAT-----ATGTGACACTAG-----AA--GCCACAA i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 173647 60 - 135371336 ATTAA---ATT---ATAGGTAAGTCCAAAACA---C-----------------------------------------------------------------------AAAACAT-----ATGTGACACTAGAAGATAA--GCCACAA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3436 55 + 26550 --------ATT---ATATGCAATCCCAAAATA---C-----------------------------------------------------------------------AAAACAT-----ATGTGACACAGAAAAATAA--CCTGTAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 791 44 - 57811 ATTAA---ATTACCATGTACAATTCAAAAATA---T-----------------------------------------------------------------------AAAACAT----CATGTGA---------------------- i tupBel1.scaffold_103331.1-57811 C 0 I 1267 s cavPor3.scaffold_248 211696 127 + 667635 ---------------TACACTGTTTCAAGATT---TTTTTTTTTTTTTGGTCTTTTTCGTTTCTATCGGTACCAACAATTACACTGTTTCAACTGCAAAGTGAAATCAAAATATGTAATATGTTACAATGGAAAATAA--ATCACAA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54799 57 + 100761 A-------GCT---ACCTGCAATGCCCAAATA---C-----------------------------------------------------------------------AAAGCAT----TATGTGACAGAGGACAATAA--GCCATAA i speTri1.scaffold_137548 C 0 C 0 s dipOrd1.scaffold_79724 396 56 + 3406 ---------TT---ATATGTGATTCCAAGATA---T-----------------------------------------------------------------------AAAACAT---ATACATGACAGTAGAAAATAA--AGCGTAA i dipOrd1.scaffold_79724 C 0 C 0 s oryCun2.chrUn0106 657291 49 + 1032594 ATTAAATTGTC---ATCTGCAATACCAAAA-----------------------------------------------------------------------------AAAATTTGTGATAC----------------A--GGCATAA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29953127 61 - 76506943 ATT-----ACC---ATCTGTAATTCCAAAATA---C-----------------------------------------------------------------------AAAACAC--AACCTGTGACACAGGAAAATAA--GCCATAA i bosTau4.chr17 C 0 I 4 s equCab2.chr8 64132515 56 - 94057673 ATC-----ATC---ATATACAATTCCAAAAT-------------------------------------------------------------------------------ACAC--ATTATGTGACACAGGAAAACAA--GCCATAA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3175857 57 + 42029645 ATT-----AGC---AT----GATTCCAAAATA---T-----------------------------------------------------------------------GAGACAC--CCTGTGAGACACAGGAAAATAA--GTCATTA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_117471 3799 53 - 4472 ATT-----GTC---ATATGCAGTGACCATAC----------------------------------------------------------------------------AAAACAC--CTTATGTGAC-CAAAAAAA-------CATAA i myoLuc1.scaffold_117471 C 0 C 0 s loxAfr3.scaffold_113 94203 56 - 3408981 GTT-----ATC---ATATGCAATTCTAAAATA---C-----------------------------------------------------------------------AAAACAT-------GTGACACAGGAAAATAA--GCCATAA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 18886 54 + 154172 ATT-----ATC---ATATGCAGTTCCAAAACA---T-----------------------------------------------------------------------GAAACA---------TGGCACAAGAAAATAA--GCCATAA i dasNov2.scaffold_7587 I 5 C 0 s xenTro2.scaffold_677 219394 47 - 553670 ATTAA---AAT---TTGTATTAGTGCAAAAAAACCC-----------------------------------------------------------------------AAATTGT-----ACTTAATAT------------------A i xenTro2.scaffold_677 T 37062 C 0 s fr2.chrUn 102972362 51 - 400509343 -------------AATATGTCCCTCTGTTGCC---T-----------------------------------------------------------------------AAAGTAT---------GACACTGAGACTTAACAGTCAACA i fr2.chrUn C 0 I 12 s oryLat2.chr17 10914211 35 + 31848461 -------------TCGATATTC-------------------------------------------------------------------------------------AGAACAT---------GGTGCAGTGAATTAG-----AACG i oryLat2.chr17 C 0 I 11 s danRer6.chr19 42234009 38 - 48708673 -------------AGCATTTTTTTTTAA-------------------------------------------------------------------------------ACAGCAT---------------GCAAATTAT--ATAAATA i danRer6.chr19 C 0 I 8 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=36722.000000 s hg19.chrUn_gl000223 46458 21 + 180455 ----------ATACCACTAAGAAATGTCTTA s rheMac2.chr11 184261 21 - 134511895 ----------ATACCACTAAGAAATTTCTTA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 211480 21 - 136387465 ----------ATACCACTAAGAAATGTCTTA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 509 21 + 8399 ----------ATACCACTAAGAAATGTCTTA i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 173707 21 - 135371336 ----------ATACCACTAAGAAATGTCTTA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3491 21 + 26550 ----------ATACAAATAAGAAATTTCTTA i otoGar1.scaffold_101698.1-26550 C 0 I 273 s cavPor3.scaffold_248 211823 21 + 667635 ----------ACACTAATAGGAATTTTCTTC i cavPor3.scaffold_248 C 0 I 4 s speTri1.scaffold_137548 54856 17 + 100761 ----------ATACAA----GAAATCTCCTA i speTri1.scaffold_137548 C 0 I 4 s dipOrd1.scaffold_79724 452 21 + 3406 ----------ATACTACTGTAAATTTTCCTA i dipOrd1.scaffold_79724 C 0 I 4 s oryCun2.chrUn0106 657340 18 + 1032594 ----------GTACAAATATG---TTTCTTA i oryCun2.chrUn0106 C 0 I 4 s bosTau4.chr17 29953192 21 - 76506943 ----------ATACCATGGAGAAATTTTGTA i bosTau4.chr17 I 4 C 0 s equCab2.chr8 64132571 21 - 94057673 ----------ATACCACTGAGAAATTTCTTA i equCab2.chr8 C 0 I 4 s canFam2.chr26 3175914 21 + 42029645 ----------ATACCACTGAGAAATGTCTTA i canFam2.chr26 C 0 I 4 s myoLuc1.scaffold_117471 3852 20 - 4472 ----------ATA-CACTAAGAAATTCCTAA i myoLuc1.scaffold_117471 C 0 I 4 s loxAfr3.scaffold_113 94259 21 - 3408981 ----------ATATCACTAAGAAATTTCTTA i loxAfr3.scaffold_113 C 0 I 4 s dasNov2.scaffold_7587 18940 17 + 154172 ----------AT---ACTAAGACATTTA-TA i dasNov2.scaffold_7587 C 0 I 4 s xenTro2.scaffold_677 219441 21 - 553670 ----------AGAACATTGATAAATCTTTTC i xenTro2.scaffold_677 C 0 I 3 s fr2.chrUn 102972425 26 - 400509343 aaac-----aattaaaacacgTGATGTTTTC i fr2.chrUn I 12 C 0 s gasAcu1.chrX 7282214 31 + 15657440 AAGACTTTTCTCTCAAATGCAGCATTTATGT i gasAcu1.chrX N 0 C 0 s oryLat2.chr17 10914257 17 + 31848461 ---------cttccaaa-----aatgtattt i oryLat2.chr17 I 11 C 0 s danRer6.chr19 42234055 20 - 48708673 -----------TGAGCACAGGTAATGTGAAG i danRer6.chr19 I 8 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tupBel1.scaffold_103331.1-57811 835 1267 - 57811 I e tarSyr1.scaffold_155717 1955 2143 + 5780 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=-325540.000000 s hg19.chrUn_gl000223 46479 35 + 180455 GA----TGTTT--CAATA-----A---CCAA--------------TTTATT---------CACGTAT---TTT-T--------------------------A s otoGar1.scaffold_101698.1-26550 3785 35 + 26550 GA----TGTTT--TAATA-----A---CAAA--------------TTTATT---------CATGTAT---TTT-T--------------------------A i otoGar1.scaffold_101698.1-26550 I 273 C 0 s panTro2.chr12 173728 35 - 135371336 GA----TGTTT--CAATA-----A---CCAA--------------TTTATT---------CACATAT---TTT-T--------------------------A i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 530 35 + 8399 GA----TGTTT--CAATA-----A---CCAA--------------TTTATT---------CACATAT---TTT-G--------------------------A i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211501 35 - 136387465 GA----TGTTT--CAATG-----A---CCAA--------------TTTATT---------CACATAT---TTT-T--------------------------A i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184282 49 - 134511895 GA----TGTTT--CAATG-----G---CCAAtttattcacataattttatt---------cacatat---ttt-t--------------------------a i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 211848 34 + 667635 GA----TTTTT--CAATG-----A--TTCAA--------------TTTAT-----------TCATGT---TTT-A--------------------------A i cavPor3.scaffold_248 I 4 C 0 s speTri1.scaffold_137548 54877 35 + 100761 GA----TGTTT--CAATG-----A--TTC-A--------------TTTATT---------CACATAT---TTT-T--------------------------A i speTri1.scaffold_137548 I 4 C 0 s dipOrd1.scaffold_79724 477 36 + 3406 AA----TATTT--CAATG-----A--TTCAA--------------TTTATA---------AACACAT---TTT-A--------------------------A i dipOrd1.scaffold_79724 I 4 C 0 s oryCun2.chrUn0106 657362 34 + 1032594 GA----TGTTT--CAATT-----A--TTTAA--------------TTGTC-----------ATGTAT---TTT-T--------------------------A i oryCun2.chrUn0106 I 4 C 0 s bosTau4.chr17 29953213 31 - 76506943 --------TTC--CAAAG-----A--CTCAA--------------TTTATT---------GACGTTT---TTA----------------------------G i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132596 36 - 94057673 GA----TGTTT--CAATG-----A--TTCAA--------------TTTATT---------CACATAT---TTTA---------------------------A i equCab2.chr8 I 4 C 0 s canFam2.chr26 3175939 31 + 42029645 GA----TGTTT--CAAAG-----A--GTCAA--------------TTTATT---------CACATAt----------------------------------- i canFam2.chr26 I 4 I 193 s myoLuc1.scaffold_117471 3876 19 - 4472 GA----ATTTT--CATTT-----A--TTCAG--------------T-------------------------------------------------------- i myoLuc1.scaffold_117471 I 4 N 0 s loxAfr3.scaffold_113 94284 36 - 3408981 GA----TATTT--CAATG-----A--TGCAG--------------TTTATT---------CAGGTAT---TTT-A--------------------------A i loxAfr3.scaffold_113 I 4 C 0 s dasNov2.scaffold_7587 18961 42 + 154172 GATGTTTGTTT--CAATG-----ACTCTCAA--------------TTCATT---------CACATAT---TTT-T--------------------------A i dasNov2.scaffold_7587 I 4 C 0 s macEug1.Scaffold110599 703 28 - 7437 ----TGTTCTT--TAATGTGCCCA--TGCAA--------------TTTG----------------------------------------------------A i macEug1.Scaffold110599 N 0 C 0 s xenTro2.scaffold_677 219465 45 - 553670 ----AGTGTTTGGCCACT-----A--CAGAA--------------TTTGGCCAATAGTCACACAAGC---TT-----------------------------A i xenTro2.scaffold_677 I 3 C 0 s fr2.chrUn 102972451 22 - 400509343 ------------------------------------------------------------------T-AGTTT-CT------------TCGACTCCTTCTCT i fr2.chrUn C 0 I 23 s gasAcu1.chrX 7282245 33 + 15657440 ------------------------------------------------------------------TCCGTTC-TTATAGAAGGCTT--CAACGCCTTTTTA i gasAcu1.chrX C 0 I 17 s oryLat2.chr17 10914274 19 + 31848461 ------------------------------------------------------------------t---ttt-gtatagtAAAACTAT------------- i oryLat2.chr17 C 0 C 0 s danRer6.chr19 42234075 15 - 48708673 ------------------------------------------------------------------T---TTC-ATGCACCTAGT----------------- i danRer6.chr19 C 0 n 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tupBel1.scaffold_103331.1-57811 835 1267 - 57811 I e tarSyr1.scaffold_155717 1955 2143 + 5780 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=37691.000000 s hg19.chrUn_gl000223 46514 37 + 180455 AAACTT-----CACACTTCAAAGTGAACAT--CTGTCAACC---ACT s rheMac2.chr11 184331 37 - 134511895 AAACTT-----CACACTTCAAAGTGAACAA--CTGTCAACC---ACT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 211536 37 - 136387465 AAACTT-----CACACTTCAAAGTGAACAT--CTGTCACCC---ACT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 565 37 + 8399 AAACTT-----CACACTTCAAAGCGAACAT--CTGTCAACC---ACT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 173763 37 - 135371336 AAACTT-----CACACTTCAAAGTGAACAT--CTGTCAACC---ACT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3820 36 + 26550 AAACTT-----CATATGTCAGAGTGAACAT--CTGGTAA-C---ACA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_108613.1-130013 57324 33 + 130013 AGTCTT-----CACACTT--AAGTAA--AT--TTACCTACC---ACC i tupBel1.scaffold_108613.1-130013 n 1267 C 0 s cavPor3.scaffold_248 211882 36 + 667635 AA-CTT-----CACATTTCAGAGTGAACAC--TCATTAGCC---ATT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 54912 37 + 100761 AAACTT-----CCTACTTTGAAGGAAACAT--CTGTCAGCC---ACT i speTri1.scaffold_137548 C 0 C 0 s dipOrd1.scaffold_79724 513 40 + 3406 AATCTT-----CATACTTCAGCATGAATGC--CTGTCAATCTCAGTT i dipOrd1.scaffold_79724 C 0 C 0 s oryCun2.chrUn0106 657396 29 + 1032594 AA-------------TTTCAAAGTGAGTAT--CTGTCAACC---ATT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29953244 29 - 76506943 AAACTT-----CATACTTGAGCCTTAATAT-------AATT------ i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64132632 37 - 94057673 AAACTT-----CATACTTCAAAGTGAACAT--CCATCAACC---ATT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3176163 34 + 42029645 AAGCTT-----CATTCTTCAGAGTGAGCAT----ATCAACC---AT- i canFam2.chr26 I 193 I 186 s loxAfr3.scaffold_113 94320 37 - 3408981 AAGCTT-----CACACTTCAGACTGGACAC--CTGTCAGCC---ATT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 19003 37 + 154172 AAACTT-----AATACTTGGGAGGGATCAA--GTGTCAACC---ACT i dasNov2.scaffold_7587 C 0 C 0 s macEug1.Scaffold110599 731 42 - 7437 AATCTTTCCCACTTACTACACAGGAAAGATTACCGTCAAGC---A-- i macEug1.Scaffold110599 C 0 C 0 s xenTro2.scaffold_677 219510 24 - 553670 TGGTTT-----CACCCCT----GTGTGAAT--CTG------------ i xenTro2.scaffold_677 C 0 n 0 s fr2.chrUn 102972496 34 - 400509343 AAGCTT-----TGAATCCCATTACAGGCCC--CTTTTGACC------ i fr2.chrUn I 23 C 0 s gasAcu1.chrX 7282295 27 + 15657440 ATATTT--------ACTTTAAGACGTCTCC--CCCTT---------- i gasAcu1.chrX I 17 C 0 s danRer6.chr3 207803 17 - 60907308 AAATCT----------CTTATTGCAGA-------------------- i danRer6.chr3 I 8276 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e oryLat2.chr17 10914293 0 + 31848461 C e choHof1.scaffold_59997 7489 365 + 12755 M a score=-94752.000000 s hg19.chrUn_gl000223 46551 38 + 180455 TAGAATT------------------G---GGTA-TTTTTGGTACCCATG-TCTAC---AAAAAG s rheMac2.chr11 184368 38 - 134511895 TAGAATT------------------G---GGTA-TTTTTGGTACCCATG-TCTAC---AAAAAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 211573 38 - 136387465 TAGAATT------------------G---GGTA-TTTTTGGTACCCATG-TCTAC---AAAAAG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 602 38 + 8399 TAGAATT------------------G---GGTA-TTTTTGGTACCCATG-TCTAT---AAAAAG i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 173800 38 - 135371336 TAGAATT------------------G---GGTA-TTTTTGGTACCCATG-TCTAC---AAAAAG i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3856 37 + 26550 TAGAACT------------------G---CATA-TTTTTGGTACCCCTG-CCTAC----AAATG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_108613.1-130013 57357 36 + 130013 TAAAACT------------------GACCAGTC-TTTATAGTA-----A-TTTAT---AGACAG i tupBel1.scaffold_108613.1-130013 C 0 C 0 s cavPor3.scaffold_248 211918 33 + 667635 TGGAATT------------------G---AGAT-TG-----AACTCATG-TCTAT---AAGAAG i cavPor3.scaffold_248 C 0 I 153 s speTri1.scaffold_137548 54949 27 + 100761 TAGACTG------------------C---TGGT---------ACCCACA-TCTAT---AAT--- i speTri1.scaffold_137548 C 0 C 0 s dipOrd1.scaffold_79724 553 26 + 3406 GAGAACT------------------G---AGGA-CT------ACTAGTA-TCTGT--------- i dipOrd1.scaffold_79724 C 0 C 0 s oryCun2.chrUn0106 657425 37 + 1032594 GGAACTG------------------G---CTAT-TTT-TGGTACCCATG-TCTAG---AAAAAG i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132669 36 - 94057673 --TAAAT------------------A---GGGT-ATTTTGGTACCCATG-TTTAT---AAAAAC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3176383 41 + 42029645 CAGAATT------------------G---GGAA-TTTTTGATAACCATG-TCTATTAATAAAAA i canFam2.chr26 I 186 C 0 s bosTau4.chr17 29953273 38 - 76506943 TAGAACC------------------A---GTTA-TTTTTGGTACCCATG-TCTAT---AAAGAG i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94357 37 - 3408981 TAGAATT------------------G---GGTA-TTTTTGGTGCCCACG-TCAAC---AAAAC- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 19040 38 + 154172 AAGAATT------------------G---ACTAGTTTTTGACACCCATG-TTTAT---AACAA- i dasNov2.scaffold_7587 C 0 C 0 s macEug1.Scaffold110599 773 11 - 7437 ------T------------------G---AGTT-TTCTT------------------------- i macEug1.Scaffold110599 C 0 N 0 s xenTro2.scaffold_1263 59272 33 + 112973 TAGAAGG------------------G---AATT-TTTT-----CCCACATTCTGT---GCAAG- i xenTro2.scaffold_1263 T 1495 C 0 s fr2.chrUn 102972530 25 - 400509343 -AGGACTGCACACCGACTACTGAACG-------------------------------------- i fr2.chrUn C 0 C 0 s gasAcu1.chrX 7282322 1 + 15657440 -------------------------G-------------------------------------- i gasAcu1.chrX C 0 C 0 s danRer6.chr3 207820 1 - 60907308 -------------------------G-------------------------------------- i danRer6.chr3 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tarSyr1.scaffold_155717 1955 2143 + 5780 I e oryLat2.chr17 10914293 0 + 31848461 C e choHof1.scaffold_59997 7489 365 + 12755 M a score=-23074.000000 s hg19.chrUn_gl000223 46589 39 + 180455 TGTATG-GCT-T--C-----------------------CCTT-------GACAGTACTATACTG---------AGGGGCAAG s rheMac2.chr11 184406 39 - 134511895 TGTATG-GCT-T--C-----------------------CCTT-------GCCAGTACTATACTG---------AGGGGCAAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 211611 39 - 136387465 TGTATG-GCT-T--C-----------------------CCTT-------GACATTACTATACTG---------AGGGGCAAG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 640 39 + 8399 TGTATG-GCT-T--C-----------------------CCTT-------GACAGTACTATACTG---------AGGGGCAAG i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 173838 39 - 135371336 TGTATG-GCT-T--C-----------------------CCTT-------GACAGTACTATACTG---------AGGGGCAAG i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3893 41 + 26550 AGTATG-GTT-TTCC-----------------------TCTT-------CATAGCATTATTTCA---------AGGGGCACA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_108613.1-130013 57393 40 + 130013 TGAACA-CCA-A--CT----------------------TCTC-------CACAGGATTCTCAAT---------ACGATCATG i tupBel1.scaffold_108613.1-130013 C 0 C 0 s cavPor3.scaffold_248 212104 39 + 667635 TGTATT-GCT-T--A-----------------------CCCT-------CGTAGCATTGTTTCT---------ACAAATAAA i cavPor3.scaffold_248 I 153 C 0 s speTri1.scaffold_137548 54976 38 + 100761 --TGTGAGGT-T--T-----------------------CCAT-------GACAGCATTACTTCA---------AGGGACACA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657462 39 + 1032594 --TATACACTGT--C-----------------------TCTT-------TATAGTACCACTTTT---------AGGAACACA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132705 39 - 94057673 TGTATG-CCT-T--C-----------------------CCTT-------TGTAGCATTATTTCT---------AGGGACACA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3176424 37 + 42029645 AGTACA-GGT-T--C-----------------------CCTT-------GATAGCTTTACTTCT---------AGGG--GCA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953311 39 - 76506943 TGCATG-GCT-T--T-----------------------CTAT-------TATAGCATTATTTCA---------AGGGGCATG i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94394 38 - 3408981 TGCAGG-GCA-T--C-----------------------CCTT--------GCAGCATTATCTCT---------AGGTGAACA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 19078 39 + 154172 TGTATG-GCT-T--T-----------------------CCTT--------ATAGCATTATATCCA--------AGGGGCGAA i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_1263 59305 62 + 112973 TGAATG-GTT-T--CTCCCCTGTGTGAATCCTCTGGTGTCTT-------TCAAGGTCTGTCTGT---------TGACTGAAG i xenTro2.scaffold_1263 C 0 C 0 s fr2.chrUn 102972555 45 - 400509343 ----TC-GAT-T--T-----------------------ATTTCCGATCCGTCTTCTCCGTACTCTCATAAAAGAAG------ i fr2.chrUn C 0 I 4 s gasAcu1.chrX 7282323 37 + 15657440 ----TG-GGT-T--C-----------------------TTATATGACGCTTCAACACTGCTGTCC--------AAG------ i gasAcu1.chrX C 0 N 0 s danRer6.chr3 207821 11 - 60907308 ----TG-AAC-A--T-----------------------TCGT---------------------------------------- i danRer6.chr3 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e dipOrd1.scaffold_79724 579 0 + 3406 C e tarSyr1.scaffold_155717 1955 2143 + 5780 I e oryLat2.chr17 10914293 0 + 31848461 C e choHof1.scaffold_59997 7489 365 + 12755 M a score=37815.000000 s hg19.chrUn_gl000223 46628 23 + 180455 TGTTCCCAGTG--TCTTTAAATTGT s fr2.chrUn 102972604 25 - 400509343 AGATTACAGTCAACCTCTTGATTGT i fr2.chrUn I 4 C 0 s xenTro2.scaffold_1263 59367 23 + 112973 CTTTTCCGGCA--TTCTACACTAGC i xenTro2.scaffold_1263 C 0 I 27935 s dasNov2.scaffold_7587 19117 23 + 154172 TGTTTCCAATG--CCTTTAAATTGT i dasNov2.scaffold_7587 C 0 C 0 s loxAfr3.scaffold_113 94432 23 - 3408981 TGTTCCCAATG--TCTTTAAACTGT i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29953350 23 - 76506943 TATTTCTAATG--TCTTTAAACTGT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3176461 23 + 42029645 TATTTCCAAGG--CATTTAAATTAG i canFam2.chr26 C 0 C 0 s equCab2.chr8 64132744 20 - 94057673 TATTTCCAATG--ACATTAAAT--- i equCab2.chr8 C 0 C 0 s oryCun2.chrUn0106 657501 18 + 1032594 GGTTACCAGCA--TCTTTTT----- i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_137548 55014 18 + 100761 CATTTCCAAGG--TAATTCT----- i speTri1.scaffold_137548 C 0 C 0 s cavPor3.scaffold_248 212143 18 + 667635 CCGTTCCAATA--TGTTTGT----- i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_108613.1-130013 57433 22 + 130013 C-TTATTAAAT--TCTTCAAATTAG i tupBel1.scaffold_108613.1-130013 C 0 n 0 s otoGar1.scaffold_101698.1-26550 3934 22 + 26550 TGTTCCCAATG--TCTTC-AAGTGT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s panTro2.chr12 173877 23 - 135371336 TGTTCCCAGTG--TCTTTAAATTGT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 679 23 + 8399 TGTTCCCAGTG--TCTTTAAATTGT i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211650 23 - 136387465 TGTTCCCAGTG--TCTTTAAATTGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184445 23 - 134511895 TGTTCCCAGTG--TCTTTAAATTGT i rheMac2.chr11 C 0 C 0 s petMar1.Contig43357 3315 16 - 11193 ----cacagtg--cacttgaag--- i petMar1.Contig43357 N 0 C 0 s danRer6.chr3 207832 18 - 60907308 -----ACGGTT--TCTCTCCAGTGT i danRer6.chr3 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e dipOrd1.scaffold_79724 579 0 + 3406 C e tarSyr1.scaffold_155717 1955 2143 + 5780 I e oryLat2.chr17 10914293 0 + 31848461 C e choHof1.scaffold_59997 7489 365 + 12755 M a score=46193.000000 s hg19.chrUn_gl000223 46651 33 + 180455 TA-------GGTTC-TCCATAATATGAA-TTCTCCAAAATAC-------- s panTro2.chr12 173900 33 - 135371336 TA-------GGTTC-TCCATAGTATGAA-TTCTCCAAAATAC-------- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 702 33 + 8399 TA-------GGTTC-TCCATAATATGAA-TTCTCCAAAATAC-------- i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211673 33 - 136387465 TA-------GGTTC-TCCATAATATGAA-TTCTCCAAAATAC-------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184468 33 - 134511895 TA-------GATTC-TCCATAGTATGAA-TTCTCCAAAATAC-------- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4098 34 + 5780 TG-------GGTTTATCCATAATATAAA-TTATGAAAAATAC-------- i tarSyr1.scaffold_155717 I 2143 C 0 s otoGar1.scaffold_101698.1-26550 3956 34 + 26550 TA-------GGTTTACCTACAATATGAA-TTCCCCAAAATAC-------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s cavPor3.scaffold_248 212161 34 + 667635 TA-------GGTTTACCGGCAATATGAA-CTTTCCAAAATGC-------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55032 34 + 100761 TA-------GGCTTATCTACAATATGAA-TTCTCTAAAGTAC-------- i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657519 34 + 1032594 AA-------GGTTCATCAACAATATGAA-TCCTCCACTATAC-------- i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132764 34 - 94057673 TA-------GGTTTACCCACAATACGAA-TTCTCCAAAATCT-------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3176484 35 + 42029645 TA-------GTTTTGCCCACAATATGAATTTCCCCAAAAtac-------- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953373 20 - 76506943 TA-------GGTACACCCACAGGACAC----------------------- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94455 34 - 3408981 TA-------GTCTTCTCCACAATATGAA-TTCCCCAATATGC-------- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 19140 31 + 154172 GA-------GATTTCTCTACAATATGAA-TTCTTCAATA----------- i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_1199 20688 33 + 134240 -T-------GGTTTCTCCCCTGTGTGGG-TTCTCTGATGAGT-------- i xenTro2.scaffold_1199 n 27935 I 3 s fr2.chrUn 102972629 35 - 400509343 -ATTGTTTAGCTACACAATAA-----TA-TGCCCTAacgtta-------- i fr2.chrUn C 0 I 9 s danRer6.chr3 207850 16 - 60907308 -G------------------------GA-TCCTCTCATGTTT-------- i danRer6.chr3 C 0 I 11 s dipOrd1.scaffold_79724 579 22 + 3406 -------------------TAACATGAA-TTCCAAAAAATTA-------- i dipOrd1.scaffold_79724 C 0 C 0 s oryLat2.chr17 10914293 16 + 31848461 --------------------G-----GT-TCCTCTGATGTGA-------- i oryLat2.chr17 C 0 I 12 s petMar1.Contig43357 3331 40 - 11193 ---------gggttctctcctgtgtgtg-ttctctggtgttttttaagat i petMar1.Contig43357 C 0 C 0 e felCat3.scaffold_141210 70281 384 - 81011 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=-129370.000000 s hg19.chrUn_gl000223 46684 27 + 180455 ------------AAAAT-AGTCTC-G-TTACTTGTTGCA--CTG s panTro2.chr12 173933 27 - 135371336 ------------AAAAT-AGTCTG-G-TTACTTGTTGCA--CTG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 735 27 + 8399 ------------AAAAT-AGTCTG-G-TTACTTGTTGCA--CTG i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211706 29 - 136387465 ------------AAAATAAGTCTGTG-TTACTTGTTGCA--CTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184501 27 - 134511895 ------------AAAAT-AGTTTG-G-TTTCTTGTTGCA--CTA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4132 22 + 5780 ------------AACAT-AGTTGG-G-TGAC-----AGA--TTG i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 3990 20 + 26550 ------------AATAT-ACTTAA-GATTACT----------TA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 601 29 + 3406 ------------AACAT-AGTTGA-A-CTACTTCCTGAAGATTG i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212195 29 + 667635 ------------AGTGC-AGTTAG-G-TCACTTAATGAAGATTC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55066 19 + 100761 ------------AACAT-CCTGGG-G-GTAC----------ATG i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657553 30 + 1032594 ------------AATAT-AGTTGGCT-TTACTTGCTGAAGTTTG i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132798 29 - 94057673 ------------AATAC-AGTTGA-A-TTACTTGCTGAAGATTG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70668 29 - 81011 ------------aatat-ggttgg-a-ttacctgctgaagagtg i felCat3.scaffold_141210 M 384 C 0 s canFam2.chr26 3176519 29 + 42029645 ------------aatgt-ggttgg-a-ttacctgctgaagattg i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953393 29 - 76506943 ------------AATAT-GGTGGG-G-TTACTTGCCGAAGATTG i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94489 29 - 3408981 ------------ACTAT-AGCTGG-A-TTACTTGCTAAAGACAG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 19171 27 + 154172 --------------TAT-AACTAG-A-TTACTTGCTGAAAACTG i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_1199 20724 26 + 134240 -----------------AAGTTGG-GATTGGTCTGAGAAACATT i xenTro2.scaffold_1199 I 3 C 0 s fr2.chrUn 102972673 3 - 400509343 -----------------------------------------ata i fr2.chrUn I 9 T 5111 s oryLat2.chr17 10914321 3 + 31848461 -----------------------------------------ATA i oryLat2.chr17 I 12 N 0 s danRer6.chr3 207877 3 - 60907308 -----------------------------------------CTA i danRer6.chr3 I 11 I 267 s petMar1.Contig43357 3371 21 - 11193 cagatgaacttgaaaat-gcct---------------------- i petMar1.Contig43357 C 0 C 0 e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=269308.000000 s hg19.chrUn_gl000223 46711 39 + 180455 TCCCATATTTAGTACTTTCATAGAACTTCATTCCTAAGA s panTro2.chr12 173960 39 - 135371336 TCCCATATTTAGTACTTTCATAGAACTTCATTCCTAAGA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 762 39 + 8399 TCCCATATTTAGTACTTTCATAGAACTTCATTCCTAAGA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211735 39 - 136387465 TCCCATATTTAGTACTTTCATAGAACTTCATTCCTAAGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184528 39 - 134511895 TCCCATATTTAGTAGTTTCATAGAACTTCATTCCTAAGG i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4154 36 + 5780 TTCCATATTTAGTA-TTTAAGAGAATTTCATTCCTGA-- i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4010 39 + 26550 TCCTGTATTTAGTAGTTACATAGAATTTACTTCCTAAGG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 630 39 + 3406 TCCTACGTTTAGTATTTTCACAGAATTTCATTTCTAAAT i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212224 39 + 667635 TTCCACATTTAATTTTTTCATATAATTTCATTCCTCAGG i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55085 39 + 100761 TCCCATAGATAGTGATTTCATAGAAGTTCATTCCTAACA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657583 35 + 1032594 TCCCACATTTAGTATTTCCTTAAAATTTC----CTAACA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132827 39 - 94057673 TCCCATATTTAGTATGTTCATAGCGTTTCATTCCTGAGG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70697 39 - 81011 tcccatatttagtattttcacagagcttcattcctgaga i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176548 39 + 42029645 tcccatacttagtattttaactgagcttcatttctgaga i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953422 38 - 76506943 TCCTATATTTAGTATTTTCAAAGAA-TTCATTCCTGAGG i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94518 38 - 3408981 TCCCGTATTTAGTATTTTCATGTTATCTCA-TCCTGTGG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 19198 27 + 154172 TTCCATATTTAGTATTTT-ATAGCATTT----------- i dasNov2.scaffold_7587 C 0 M 2397 s xenTro2.scaffold_1199 20750 39 + 134240 TCCCACACTCAGAACATGAAAATTGTTTCTTCCCTGTAT i xenTro2.scaffold_1199 C 0 C 0 s tetNig2.chrUn_random 51482997 39 - 107808587 tcccacatgttttacaactatatggtttctcccctgtgt i tetNig2.chrUn_random N 0 C 0 s fr2.chrUn 102967565 39 - 400509343 TCCCACATATTTTGCAACCATATGGCTTCTTACCTGTAT i fr2.chrUn T 5111 C 0 s gasAcu1.chrXIII 16762394 36 + 20083130 GGTCACAGGCT---CACATAAAAGGTCACATTCCTGAGA i gasAcu1.chrXIII N 0 C 0 s oryLat2.chr17 11088105 39 + 31848461 ttccacatactTCACAAGTAAAAGGCCTCtcacctgtgt i oryLat2.chr17 N 0 C 0 s danRer6.chr3 208147 39 - 60907308 TCCCACACTGAGTGCAAGTGAATGGCTTCTCGCCAGTGT i danRer6.chr3 I 267 C 0 s petMar1.Contig43357 3392 39 - 11193 tcccacacacaatgcacttgaagagattctctcctgtgt i petMar1.Contig43357 C 0 I 1486 e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=58521.000000 s hg19.chrUn_gl000223 46750 8 + 180455 GCA------------------------TTTTC s panTro2.chr12 173999 8 - 135371336 GCA------------------------TTTTC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 801 8 + 8399 GCA------------------------TTTTC i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211774 8 - 136387465 GCA------------------------TTTTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184567 8 - 134511895 GCA------------------------TTTCC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4190 7 + 5780 -CA------------------------TTCTC i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4049 8 + 26550 GTA------------------------TTTTC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 669 8 + 3406 GTA------------------------TTCTA i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212263 8 + 667635 TCA------------------------TTTTC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55124 8 + 100761 GCA------------------------TATTC i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657618 8 + 1032594 ACA------------------------TTTTC i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132866 8 - 94057673 GCA------------------------TTTTC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70736 7 - 81011 gta------------------------tttt- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176587 8 + 42029645 gta------------------------tgttc i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953460 8 - 76506943 GCA------------------------TCTTC i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94556 8 - 3408981 GCA------------------------TTTTT i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_1199 20789 8 + 134240 GGG------------------------TTCTC i xenTro2.scaffold_1199 C 0 C 0 s tetNig2.chrUn_random 51483036 8 - 107808587 gaa------------------------ctctc i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102967604 8 - 400509343 GGA------------------------CTTTC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16762430 32 + 20083130 GACTCACCCGACGCAGGCTCAACAATTTTCCC i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088144 8 + 31848461 gaa------------------------ttctc i oryLat2.chr17 C 0 C 0 s danRer6.chr3 208186 8 - 60907308 GGA------------------------TCCTC i danRer6.chr3 C 0 C 0 s petMar1.Contig2426 25506 8 - 37044 gtg------------------------ttctc i petMar1.Contig2426 n 1486 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e choHof1.scaffold_59997 7489 365 + 12755 M a score=33822.000000 s hg19.chrUn_gl000223 46758 69 + 180455 T-TATGTACAATGAA-----------------------------------------------------------CTGTCA-------------------------TT--TCT--T----AAAAATATTGC-CTCATTTCCCGCATTCATGGGGTTTTCCCTCA s panTro2.chr12 174007 69 - 135371336 T-TATGTACAATGAA-----------------------------------------------------------CTGTCA-------------------------TT--TCT--T----AAAAATATTGC-CTCATTTCCCACATTCATGGGGTTTTCCCTCA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 809 69 + 8399 T-TAGGTACAATGAA-----------------------------------------------------------CTGTCA-------------------------TT--TCT--T----AAAAATATTGC-CTCATTTCCCGCAATCATGGGGTTTTCCCTCA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211782 69 - 136387465 T-TATGTACAATGAC-----------------------------------------------------------CTGTCA-------------------------TT--TCT--T----AAAAATATTGC-CTCATTTCCTGCATTCATGGGGTTTTCCCTCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184575 69 - 134511895 T-TATGTACAATGAA-----------------------------------------------------------CTGTCA-------------------------TT--TCT--T----AAAAATATTGC-CTCATTTCCTGCATTCATGGGGTTTTCCCTCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4197 66 + 5780 G-TATGAATAAT---------------------------------------------------------------CGTCA-------------------------TT--TCT--TGATAAACAATATTGC-CTCATTTGCTGTATTC---GAGCTTTCCCTCA i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4057 73 + 26550 T-TAAGTACAATGAA-----------------------------------------------------------CTGTGA-------------------------TT--TCT--TAATAAAAAACATTGC-CTCACTTGGTACATTCATGGGGCTTTTTCTCA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 677 72 + 3406 T-TATGTAGAGTGAC-----------------------------------------------------------CTGTCA-------------------------TT--ACT--TGAT-AAAAGTACTGT-CTTGGTTGATGTAATCCATTCGTTTTCTATGA i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212271 49 + 667635 T-AAAGAACAATGAG-----------------------------------------------------------CTGTCA-------------------------TT--TCT--GAAT-AAAAGTA----------------TAGCACACTAGCT-------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55132 71 + 100761 T-TATTTACAACAAG-----------------------------------------------------------CTCTTG-------------------------TT--TCC--TGA--AAAAGTATTGC-CTCACTTGCTGCATTCTGGGAATTATCCCTCA i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657626 68 + 1032594 T-TGT----AATTAG-----------------------------------------------------------CTATGA-------------------------TT--TCT--TGAT-GAAAATGTTGC-CTTGCTTGCCGTATTTATGGAGTTTCCTCTCA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132874 67 - 94057673 T-TACATACAATGAA-----------------------------------------------------------CTGTCA-------------------------TT--TCT--GGAT-GAAAATAT----GTCACTTGCTGCATTCATGGG--TTTTCTTCC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70743 71 - 81011 --aatgcacaatgag-----------------------------------------------------------ctgtga-------------------------tt--tct--tgat-ggaaacatcac-ctcacttgccgtattcatgggatttttcttcA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176595 72 + 42029645 tgaatgcacaac-ag-----------------------------------------------------------ctgtga-------------------------tt--tct--tgat-aaaaatattac-atcacttgctgcattcatggggtttttcttcA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953468 72 - 76506943 T-TATGTACAATGAG-----------------------------------------------------------CTGTTA-------------------------TT--TCT--TGAT-GAAAATATCAC-CTCACTTGCTGTATTCGTGAAGTTTTCCTTAA i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94564 69 - 3408981 T-GGTGTACAATGAG-----------------------------------------------------------CTGTCA-------------------------TT--AAT--T----GAAGATCTTGC-CTCACTTGCTGCATTTATGAGGTATTCCCTCA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 7856 71 + 12755 T-TAAGTACAATGAA-----------------------------------------------------------CTATCA-------------------------TT--TCTGAT----AAAAACTTTCC-TCCAATTGCTGCATTCATGGGGTTTTCCCTCA i choHof1.scaffold_59997 M 365 C 0 s xenTro2.scaffold_1199 20797 67 + 134240 T-GATGAGTTTTAAG-----------------------------------------------------------GTGGGA-------------------------TTGGTCT--G----AAAAACATTTCTCACATTCAGAACAAGAAAATGGTTTCA----- i xenTro2.scaffold_1199 C 0 C 0 s tetNig2.chrUn_random 51483044 66 - 107808587 -atgtggaCGGTTAA-----------------------------------------------------------TGAGGA-------------------------GG--TTT--CGTA-GAATGATTTCC-CACATGTACTACAGATGATTAGTTTC------ i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102967612 150 - 400509343 -ATATGTTCTGTCAAGTTATTTCGAAGTCTGAAAGTTTTCCCGCATGCGTTACAAATGTATGGCTTTTCACCTGTGTGGATTTTTAAATGATCTGACAATTTACTGC--TTT--gtct-gaaggcttttc-cacaagTCTTGCAAATATAAggcttc------ i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16762462 62 + 20083130 -CTGACAATGTTCAC-----------------------------------------------------------TCAA-------------------------------TGT--GCAA-CAAAGATTTTT-CAAAGATTTTTAGTGATTACAGTAAA------ i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088152 66 + 31848461 -atgtgaacATTTAA-----------------------------------------------------------GGAAGA-------------------------AT--TAT--gagc-aaaatgttttt-cacaaactttaCAAGAATACGGCTTT------ i oryLat2.chr17 C 0 C 0 s danRer6.chr3 208194 66 - 60907308 -ATGTGTGCATAAAG-----------------------------------------------------------TGATGG-------------------------TG--ATT--GGCT-AAAACTCTTCC-CACACTGAGTGCATGGAAATGGTTTC------ i danRer6.chr3 C 0 I 41 s petMar1.Contig2426 25514 66 - 37044 t-ggtgtcgaTGAAG-----------------------------------------------------------ATGTCG-------------------------tg--act--gtga-aaatgccttac-cacacacactgcacttgaagggtttc------ i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I a score=-707.000000 s hg19.chrUn_gl000223 46827 35 + 180455 T------------------CC-CC------AGTGGGAATATTTCTAATAGCTTAAGAGAC s panTro2.chr12 174076 35 - 135371336 T------------------CC-CC------AGTGGGAATATTTCTAATAGCTTAAGAGAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 878 35 + 8399 T------------------CC-CC------AGTGGGAATATTTCTAATAGCTTAAGAGAC i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211851 35 - 136387465 T------------------CC-CC------AGTGGGAATATTTCTAATAGCTTAAGAGAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184644 35 - 134511895 T------------------CT-CC------AGTGGGAATATGTCTAATAGCTTAGGAGAC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4263 34 + 5780 -------------------CT-CC------AATGAAAGTATGTCTAATAGCTTAAGAGAT i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4130 35 + 26550 T------------------CA-CC------AGTGGGGAAATTCCTAATAATTTATGAGAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 749 23 + 3406 -------------------CT-GC------AGTGGAAATATTCCTAGAG----------- i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212320 33 + 667635 -------------------AT-GC------CGTGGGAAAATTTCTAATGGCTAATGAGA- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55203 33 + 100761 T------------------CT-CC------TGTGGTAATATT--TAATAGCTGATGAGAT i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657694 34 + 1032594 -------------------TC-AC------TGTGGGAATATTTATAATAGCTACTGAAAC i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132941 54 - 94057673 CTCACTGGACTAGGGTTTACCTCC------AGTGGGAATATCTCCAAAAGCTAATGAGCC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70814 53 - 81011 TTTGCTGGATTAGGGTTTACC-CC------AGTGGGCATATTTCCAACAGCTAATGAGAT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176667 53 + 42029645 CTTACTGGACTAGTGTTTACC-CC------AGTGGGGATATTTCCAACAGCTAAGGAGAT i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953540 54 - 76506943 CTCACTGGAATAGGGTTCATTTTC------AGTGGTAATTTTTCCAATGGCTAATGAAAT i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94633 52 - 3408981 C-TCGTGCACTAGAGTTTATA-TT------CATGGAAATATTCCCAACAGCTAGTAAGAT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 7927 51 + 12755 T-CCCAGCACTGGGAAGTACC-TC------AGTGGGAATTTTTCCAAC-GCTAATGAGAT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_1199 20864 33 + 134240 -------------------CC-CC------TGTGTGGGT-TCTATAATGAATTTTCAGGT i xenTro2.scaffold_1199 C 0 C 0 s tetNig2.chrUn_random 51483110 34 - 107808587 ------------------TCC-CC------TGTGTGACTCCTCAT-GTGTCGCGTTAACC i tetNig2.chrUn_random C 0 I 3 s fr2.chrUn 102967762 34 - 400509343 ------------------tca-cc------tgtgtggatTCTCAT-GTGGCTTGACAAAT i fr2.chrUn C 0 I 3 s gasAcu1.chrXIII 16762524 39 + 20083130 ------------------TTA-CCGCAAAACATGTCACTAACAGC-ACGTTACATGAAG- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088218 34 + 31848461 ------------------TCA-CC------TGTGTGAGTCCTCAT-GTGGACCTTTAAGG i oryLat2.chr17 C 0 I 3 s danRer6.chr4 43764386 34 - 71658100 ------------------TCT-CC------AGTGTGGCTCATGAT-GTGTCGATTAAGGG i danRer6.chr4 n 41 I 2 s petMar1.Contig2426 25580 34 - 37044 ------------------tct-cc------agtgtgtgt-tctctgatggctctgaagaa i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I a score=-200557.000000 s hg19.chrUn_gl000223 46862 74 + 180455 ---TTGACT--TCTGGAAGGCT-------TTTG----------G---------A----CA---TTCAC------AGG---------ATTCTTCTTTGCTGTG-AATGTTCTACTC------TA---T-----AAGGCTTGTC s panTro2.chr12 174111 74 - 135371336 ---TTGATT--TCTGGAAGGCT-------TTTG----------G---------A----CA---TTCAC------AGG---------ATTCTTCTTTGCTGTG-AATGTTCTACTC------TA---T-----AAGGCTTGTC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 913 74 + 8399 ---TTGACT--TCTGGAAGGCT-------TTTG----------G---------A----CA---TTCAC------AGG---------ATTCTTCTTTGCTGTG-AATGTTCTACTC------TA---T-----AAGGCTTGTC i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211886 74 - 136387465 ---TTGACT--TCTGGAAGGCT-------TTTG----------G---------A----TA---TTCAC------AGG---------ATTCTTCTTTGCTGTG-AATGTTCTACTC------TA---T-----AAGGCTTTAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184679 74 - 134511895 ---TTGACT--TCTGGAAGGCT-------TTTT----------G---------A----TA---TTCAC------ACG---------ATTCTTCTTTGCTGTG-AATGTTCTACTC------TG---T-----AAGGCTTCAC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4297 72 + 5780 ---TTGCCT--TCTTGAAGGCT-------TT------------G---------T----TA---CTTGC------ACT---------ATTCCTCTTTATTGTG-AACTTTCTGCTG------TA---T-----AAGGCTTTAC i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4165 83 + 26550 ---TTGACC--TAAGGATGGGT-------TTCT----------GGTATTTGAAG----TA---TTCAC------AGA---------AGGCCTATTTGCTGTG-AATTTTATACTG------TA---T-----AAGGCTTGAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 772 67 + 3406 ---CTGAGG--TCTGACTTCTA-------TATT--------------------------------CGC------ATT---------ATTACTCCCT--------TCATACCATAATATTCTAC---T-----AAGGCTTGAC i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212353 65 + 667635 ---CTGAAC--TCTGAAAACTT-------TTCT----------G---------A-----------CAC------AGG---------GTTCCTCCTT-----G-ATCTGTCCAAGA------AA---T-----AAGGCTCAAC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55236 72 + 100761 ---TTGACC--TCTGGAAGGCT-------TTCT----------G---------A----TA---TTCAT------GGG---------ATTTCCCTTG-CTG-G-AACTTTCCACTG------CA---T-----AAGACTTGAC i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657728 74 + 1032594 ---CTGACA--TCTGGAAG--T-------TTCT----------G---------A-TATTA---TTCAA------ATT---------ATTCCACTTTGATA-T-AATTTTGTACTG------CG---C-----AAGACTTGAT i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64132995 72 - 94057673 ---CTGACT--GCTGGAAGGCT-------TTCT----------G---------A----TG---TCCAT------AGTCCAC----AGTGCCTCTTTGCTGTT-CATTTTCTACTG------TA---T-----AAG------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70867 64 - 81011 ---GTGGCC--TCTGCAAAGCT-------TTCT----------G---------A----TG---TTCAC------AGT---------ACTCATCTTTGCTATT-AATTTCCTACTG------TA---T--------------- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176720 64 + 42029645 ---GTGACC--TTTGCAAAGCT-------TTCT----------G---------A----CA---TTCAC------AGT---------ATTCCTCATTGCTATT-AATTTCCTGCTG------TA---T--------------- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953594 74 - 76506943 ---TTGATC--TCTGGAAAGCT-------TTCT----------G---------A----TA---GTCAC------AGT---------ATTCTTTTGTACTGTT-AATTTTCTACTG------TA---A-----AAGGTTTGAT i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94685 83 - 3408981 ---TTGACC--TCTGAAAGGCTACTAATATT----------------------AACAGGA---TTCAC------AGG---------CTTTCTCGTCACAGTGAAATCTTCCTTTA------TA---T-----GAGCTTTGAC i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 7978 60 + 12755 ---TTGACT--TCTGGATGGCT-------TT----------------------A---------------------------------TTTCTGTTAGCTGTG-AATTTTGTAAGG------TA---G-----AAGGTCTGAC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_1199 20897 89 + 134240 ---CGGATTGGTCTGAAAAACA-------TTTCCCACACTCAGA---------A----CA---TGAAA------ATG---------ATTTCTCCCCTGTGTG-AGTCCTTTGATG------CCGATT-----AAGGTTAGAT i xenTro2.scaffold_1199 C 0 C 0 s tetNig2.chrUn_random 51483147 77 - 107808587 ---CATTTC--GGTAGAAAGCT-------TTCC----------C---------A----CATGTTGTACAGATGAATG---------GTTTCTCATCTGTGTG-ACTTCTCATGTG-------G---A-----GAGTT----- i tetNig2.chrUn_random I 3 I 19 s fr2.chrUn 102967799 77 - 400509343 ---TTTTCA--GTCTGAActct-------tttc----------c---------a----catgttttacagatATGCG---------GCTTCTCACCggtgtg-aattctcatgtg-------g---c-----tGGAC----- i fr2.chrUn I 3 T 12144 s gasAcu1.chrXIII 16762563 42 + 20083130 ------------TAAAAAACA----------------------G---------G----CAAATTTAAC------AAT---------ACCTT---CTTTTGT------------TG-------A---T-----AA-------- i gasAcu1.chrXIII C 0 I 19 s oryLat2.chr17 11088255 77 + 31848461 ---TGCTGT--CCATGAAACCC-------TTTT----------G---------A----CATATTTCACAGGTAAAAT---------GCCTTAAActtgtgtg-agttctcatatg-------A---C-----AGGTC----- i oryLat2.chr17 I 3 I 75 s danRer6.chr3 208301 76 - 60907308 -------TT--GGCTGAAACTC-------TTCC----------C---------A----CACTGAGTGCATGTGTATG---------GTTTCTCTCCAGTGTG-GATCCTCATGTGTG----TA---T-----AAAGT----- i danRer6.chr3 I 41 I 5 s petMar1.Contig2426 25614 87 - 37044 ctgatgact--gtgcaaatgcc-------ttct----------c---------a----ca-----cac------agtgcacttgaaatgATTCTCTACTGTG-TGTGTTctatgg------tg---ttttttaagatttg-- i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I a score=-25918.000000 s hg19.chrUn_gl000223 46936 61 + 180455 TATGGTTTTAAAAGT---TTTT-GAGATCCACTGCA-GTC-----------ATAGGTTCACTCT-ACTCTATGAATTA-- s panTro2.chr12 174185 61 - 135371336 TACGGTTTTAAAAGT---TTTT-GAGATCCACTGCA-GTC-----------ATGGGTTCACTCT-ACTCTATGAATTA-- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 987 61 + 8399 TATGGTTTTAAAAGT---TATT-GAGATCCACTGCA-GTC-----------ATAGGTTCACTCT-ACTCTATGAATTA-- i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 211960 54 - 136387465 TATGGTTTTAAAAGT---TTTT-GAGATCCACTGCA-GTC-----------ACAGGTT--------CTTTATGAATTA-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184753 54 - 134511895 TATGGTTTGAAAAGT---TGTT-GAGATGCACTGCA-TTC-----------ATAGGTTCACTC--------TGAATTA-- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4369 52 + 5780 TATGGTTTGAAAGGT---TTTTGGAAATCCACTGCA-TAC-----------ATACGTTCA-----------TAAATTG-- i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4248 61 + 26550 TATGGTTTCAAAAGG---TTTT-GAGACTCACTAAA-TTC-----------ATACTTTGATTCT-ACAGTATGAATTC-- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 839 49 + 3406 T------------TT---CCAT-GAGATCCAATGCA-CTC-----------ACAGGTCCATTCT-ATTCCATCAGTGT-- i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 212418 59 + 667635 TGC--TTTGGAAGGT---TCCT-GAGACCCACTGCA-CTC-----------ACAGGATCTCTCT-CTTCCATGCATTC-- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_137548 55308 60 + 100761 CAT-GGTTGGGAAGG---ATAT-GTCACTCACTGTG-TTC-----------GTAGTATCATTCT-GCTCCATGAAGGC-- i speTri1.scaffold_137548 C 0 C 0 s oryCun2.chrUn0106 657802 49 + 1032594 G----GTTTCAAAGG---C--T-GAGAGCCACTGTG-TTC-----------AGTGGTTCACT-------TATGAATTC-- i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64133067 58 - 94057673 ----GTTGGAGAGGT---TTCT-GAAATCCACTGCATTTC-----------ATAGGCTCATTCT-ACTCTATGAATTC-- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70931 58 - 81011 ----GCTTGCCAACC---TTTT-AAAATCCACTGCATCTC-----------ATAGGCTCATTCT-ACTCCATGAGTTC-- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176784 58 + 42029645 ----GTCTGACAGTT---TTCT-GAAATCCACTGCATCTC-----------ACAGGCTCATTCT-ACTCTCAGGGTTC-- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953668 63 - 76506943 GACAGTTTGAAAGCT---TTCT-GAAATCCACTGCAATTC-----------ATAGGGTCATTCTCCCTCTAAGGAGTC-- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94768 59 - 3408981 TGTGGTTTGAAAGGT---TTTT-GAAATTCAGTGAA-TTC-----------ATAGGCTCATTCT-GCTC--TGAGTTC-- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 8038 56 + 12755 TATGGTTTAAAAGGT---TTTT-GAAATCCACTGCA-TCC-----------CTAGATTCACTCT-AC-----AAGTTC-- i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_1199 20986 61 + 134240 TGACAATTAAAACAT---TTCC-CACATACAGAACA-AGG-----------AAATGGTTTCTCC-CCTGTGTGAGTCC-- i xenTro2.scaffold_1199 C 0 C 0 s tetNig2.chrUn_random 51483243 51 - 107808587 ----------agcct---ttcc-cacatgttttaca-caa-----------atatggtttctca-cctgtgtgaacgc-- i tetNig2.chrUn_random I 19 C 0 s fr2.chrUn 102955732 50 - 400509343 ----------tgatt---tttt-catat-ttttatc-cAA-----------ATCAGTCAATTTT-GATGTGTGATCTT-- i fr2.chrUn T 12144 C 0 s gasAcu1.chrXIII 16762624 45 + 20083130 ----------TAATC---TTTG-AAATTGCTCA------------------GAATATTTCCTTA-AGTGAGTTGCATC-- i gasAcu1.chrXIII I 19 C 0 s oryLat2.chr17 11088407 52 + 31848461 ----------TGGGC---TTTT-AAGTCACTACCTC-TAA----------tgaaactttttcca-catactTCACAAG-- i oryLat2.chr17 I 75 C 0 s danRer6.chr3 208382 62 - 60907308 ----------TGGTT---GGCT-GAAACTCTTCCCA-CACTGAATGCATGTGTATGGTCTCTCT-CCAGTGTGGATCA-- i danRer6.chr3 I 5 I 3841 s petMar1.Contig2426 25701 65 - 37044 -atgactgtgaaaatgccttct-cacacacagtgca-ctt-----------gaaatgtttctcc-cctgtgtgtgttcta i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I a score=-586085.000000 s hg19.chrUn_gl000223 46997 41 + 180455 TGAT------------------------------------------------------------CGGCTTTCCATACACCA---CCTCAT-------------------------------TTA--GA-----GTTCTCATC----------- s panTro2.chr12 174246 41 - 135371336 TGAT------------------------------------------------------------CGGCTTTCCATACACCA---CCTCAT-------------------------------TTA--GA-----GTTCTCATC----------- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1048 41 + 8399 TGAT------------------------------------------------------------CGGCTTTCCATACACCA---CCTCAT-------------------------------TTA--GA-----GTTCTCATC----------- i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 212014 41 - 136387465 TGAT------------------------------------------------------------CAGCTTTCCACACACCA---CCTCAT-------------------------------TTA--GA-----GTTCTCATC----------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184807 41 - 134511895 AGAT------------------------------------------------------------CAGCTTTCCATACACCA---TCTCAT-------------------------------TTA--GA-----GTTCTCACC----------- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4421 61 + 5780 ATAT-----AT-----AAGCAT--------GC-------------------TTACCTGCT--GCAAGCTTTCCCTACATAA---CATT-T-------------------------------ATA--GA-----ATTTCTACA----------- i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4309 58 + 26550 TGAC---ATAT-----AAGCAT--------GT-------------------TCATTTCTC--TTAAGTTTCCTCAACATAA---TCTCA---------------------------------TA--GA-----CTTC----C----------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s dipOrd1.scaffold_79724 888 72 + 3406 TGAT---ATAT-----AAATATATATACTGGC-------------------CTTTCTCCT--GAAAGTTCTCCCTATTAAA---CATCAG-------------------------------TTA--TA-----ATGTCTACC----------- i dipOrd1.scaffold_79724 C 0 I 8 s cavPor3.scaffold_248 212477 52 + 667635 TGAT---AGGA-----AAGTAT--------GC-------------------TTGCCTACA--GAAA-TGTGCCCTCCAACA---CTTCAT-------------------------------TTA----------------------------- i cavPor3.scaffold_248 C 0 I 6 s speTri1.scaffold_137548 55368 66 + 100761 TGGT---GTCC-----AAGTAT-TCTCGAATG-------------------CTACCTGCT--GAGTGCTCTACCTATATAG---TTTCAT-------------------------------TTA--TA-----GAGT---------------- i speTri1.scaffold_137548 C 0 I 6 s oryCun2.chrUn0106 657851 64 + 1032594 TGGT---ACAG-----AAGTAT--------GC-------------------TTGTCTGGT--GAAGGCATTCCTTACCTAA---CTTCAT-------------------------------GTA--TG-----ATCTCCATC----------- i oryCun2.chrUn0106 C 0 I 1709 s equCab2.chr8 64133125 66 - 94057673 TGAT---ACAA-----ACAGGT--------ACA-----------------AACATCTGCT--GTAAGCGTTCCCTACAGAA---CCTCAC-------------------------------TCA--GA-----GTTCCTACC----------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 70989 62 - 81011 CTAT---ATAA-----GCATGT-----------------------------TAATCAGCT--GAAAACTTTCCCTACATAA---CCTCAC-------------------------------TTG--GA-----GTTCCTACC----------- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3176842 58 + 42029645 TTAT---ACGA-----AGAAGT-----------------------------TAATCTGCT--GAAGGCTTTCCTTACATAA---CCTCA-------------------------------------GA-----GTTCCTATC----------- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953731 64 - 76506943 TAATATAATAA-----ACACAT-----------------------------TAGTCTGCT--GAAAGCTTCCCTGACATAA---CCT-AT-------------------------------TTA--GA-----GTTCCTAAC----------- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94827 56 - 3408981 TGA-------T-----AAGTAT--------GC-------------------TCAGCTGCT--GAAA------CCCACATAA---CCTCGT-------------------------------TAACGAA-----GCTGCTACC----------- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 8094 66 + 12755 TAAT---ATTT-----ATGTAT--------GT-------------------TTATCGGCT--GAAAGGTTTGCCCAAACAA---CTTCAT-------------------------------TTATAGA-----GTTTCTACA----------- i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_1199 21047 72 + 134240 TTAG---ATGACAATCAAGTTT-----------------------------AGATTTGTTTGAAAAATATTTCCCACAT-----TCTGAA-------------------------------CAA--GAAAATGGTTTCTCCC----------- i xenTro2.scaffold_1199 C 0 I 1 s tetNig2.chrUn_random 51483294 42 - 107808587 --------------------------------------------------------------TCA--TGTGCCTAATTAAT---GCAGAA-------------------------CCTTGACTG--Aa-----ccctttcc------------ i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102955782 40 - 400509343 --------------------------------------------------------------TGA----TGCCTAGACAGT---TCATAT-------------------------GTGTTGAAG--TA-----TCTTTTCC------------ i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16762669 25 + 20083130 --------------------------------------------------------------TACAACGTTTCACACTTGT---GGACAT--------------------------------------------------------------- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088459 69 + 31848461 --------------------------------------------------------------TGAAAGGCCTCtcacctgt---gtgaattctcatgtgaacTTGTAAGGAGGAATTTTGAGca--aa-----ctgttttt------------ i oryLat2.chr17 C 0 C 0 s danRer6.chr3 212285 38 - 60907308 --------------------------------------------------------------TGATTTGTTTCTCATTCAG---GGAGTC-------------------------------AGA--GA-----ACATCATC------------ i danRer6.chr3 I 3841 C 0 s petMar1.Contig2426 25766 81 - 37044 --------------------------------tggtgttttttaagataagatgactgtg--caaactccttcccgcacagagtgcacct-------------------------------gaa--gg-----gtttctctcctgtgtgtgtt i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I a score=-266197.000000 s hg19.chrUn_gl000223 47038 70 + 180455 CTCATGGAGTA---------------CAAACACCTAACATG-------ACGTG-ACTG-------------------T--CTACAAACGTT--ATC---ATA-----------ATTG-CATTTCCT--------GAAGT--- s panTro2.chr12 174287 70 - 135371336 CTCATGGAGTA---------------CAGACACCTAACACG-------ACGTG-ACTG-------------------T--CTACAAACGTT--ATC---ATA-----------ATTG-CATTTCCT--------GAAGT--- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1089 70 + 8399 CTCATGGAGTA---------------CAGACACCTAACACG-------ACGTG-ACTG-------------------T--CTACAAACATT--ATC---ATA-----------ATTG-CATTTCCT--------GAAGT--- i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 212055 70 - 136387465 CTCATGGAGTA---------------CAGACACCTAACATG-------ATGTG-ACTG-------------------T--CTAAAAACGTT--ATC---ATA-----------ATTG-CAATTCCT--------GAAGT--- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 184848 70 - 134511895 CTCAAGGAATG---------------CAGACACATAACACA-------ATGTG-ACTG-------------------T--CTAAAAATGTT--ATC---ATA-----------ATTG-CATTTTCT--------GAAGT--- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 4482 85 + 5780 CTAAAGGAGTACTCTGACATAGTATTCTGATATAAAACAAG-------ATGTG-ATTA-------------------C--TTGGAAAATCT--ACC---GTA-----------ACTG-CATTTTCT--------GAAGT--- i tarSyr1.scaffold_155717 C 0 C 0 s otoGar1.scaffold_101698.1-26550 4367 65 + 26550 CCCCTGAAAAG---------------GAGTCCTCTGATATA-------TGATGAATTA-------------------T--CTAAAAA--------C---TTA-----------ACAG-CTTTTTCT--------GAAGT--- i otoGar1.scaffold_101698.1-26550 C 0 I 337 s dipOrd1.scaffold_79724 968 56 + 3406 CTCAAACAACTGT-------------GTGAC-----------------TCTTA-GCTG-------------------T--------AATTT--ACC---ATA-----------TCTG-TAGTTTCT--------GAAGT--- i dipOrd1.scaffold_79724 I 8 I 3 s cavPor3.scaffold_248 212535 75 + 667635 CTTAAGGTACAGT-------------CTGACATACAACAGG------ATATTG-ACTA-------------------TTATGACAAGATTT--ACC---ATA-----------ACTG-CATTTTCT--------GAAGC--- i cavPor3.scaffold_248 I 6 I 2 s speTri1.scaffold_137548 55440 74 + 100761 CCTAAGGAATACT-------------CTGATGCAAAACGTGATGCAAATATTA-CCTG-------------------A-------AAAATT--ACC---ATA-----------ACTG-CATTTTCT--------GAAGT--- i speTri1.scaffold_137548 I 6 I 3 s equCab2.chr8 64133191 68 - 94057673 GT-AACG--TCCC-------------CAGACAGACAGGGAG-------ATATG-ACTG----------------TCAT--CTGA----CTT--AGC---ACA-----------ACTG-CATTTTCT--------CAGGC--- i equCab2.chr8 C 0 I 3 s felCat3.scaffold_141210 71051 76 - 81011 CTAAAAGATTACT-------------CAGACCTACAATGTG-------ATGTG-ACTA---------------TTTAT--TTGAAAGGTTT--ACC---ATA-----------ACTG-CATTTtct--------gaagt--- i felCat3.scaffold_141210 C 0 I 3 s canFam2.chr26 3176900 78 + 42029645 CT-AATGATTACCAGA----------CAGACACATAATGTG-------ATGCA-ATTA---------------TTTAT--TTGAAAGATTT--ACC---ATA-----------ACTG-TGTTTtct--------gaagt--- i canFam2.chr26 C 0 I 3 s bosTau4.chr17 29953795 62 - 76506943 TTAAAAGTGTATT-------------CAGACATATAAAGTG-------ATGTA-ACTA----------------TTAT--CTGAAAGATTT--ACC---ATA-----------ACTG------------------------- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94883 66 - 3408981 CTAAAGGAGTTTT-------------CTGA--------CTG-------GCGTG-ACTA----------------TTAT--CTGAAAATTTT--ACC---ATA-----------A-TG-CACCTTCT--------GCAGT--- i loxAfr3.scaffold_113 C 0 I 5 s choHof1.scaffold_59997 8160 75 + 12755 GTAAAAGAGTTCT-------------CTGATACTTAAGCTC-------AAGTG-ACTA----------------TTAT--CTGAAAGATTG--ACC---ATA-----------ACTG-CCTTTTCT--------GAAAT--- i choHof1.scaffold_59997 C 0 I 2 s xenTro2.scaffold_1199 21120 93 + 134240 -TGTATGGATTCT-------------ATAATGAATTTTAAG-------GAGTG-ATTG----------------GCCT--GAAAAACATTT--TCC---ACATTCAGAACAAGAATA-TGGTTTCTCCCCTGTGTGAGT--- i xenTro2.scaffold_1199 I 1 C 0 s tetNig2.chrUn_random 51483336 62 - 107808587 --------------------------cacatgttttacaca------aatatg-gttt---------------ctcac--ctgtgtgaact--ctc---atg-------------tg-caGAGCTA--------AAGCA--- i tetNig2.chrUn_random C 0 I 9 s fr2.chrUn 102955822 65 - 400509343 --------------------------CACAGATCTGGCAGA------TAAACC-TCTT---------------CTCAC--CAATGTGGTCT--CTTCTGATG-------------TG-CATTGTTA--------ACTGA--- i fr2.chrUn C 0 I 9 s gasAcu1.chrXIII 16762694 23 + 20083130 -----------------------------------------------------------------------------------------TT--CTC---ATG-------------TG-GACAATTA--------AGTTA--- i gasAcu1.chrXIII C 0 I 9 s oryLat2.chr17 11088528 62 + 31848461 --------------------------cacaaactttaCAAG------AATACG-GCTT---------------TTCAC--CTGTGTGAGTC--CTC---ATG-------------TG-GATCTTTA--------AGTCT--- i oryLat2.chr17 C 0 I 9 s danRer6.chr3 212323 55 - 60907308 --------------------------CATAACAACAACAAA------AAAGTA-TACT---------------GTCAC--TCA---GCCTT--TTC---AAA-------------TATCATTATTA---------------- i danRer6.chr3 C 0 n 0 s petMar1.Contig2426 25847 96 - 37044 -ctctggtgtatt-------------ttaagataaaatgaa------aatgaa-aatgccttcccacacacactgcat--ttgaagggtttcactc---ctg-----------tgtg-tgttctct--------ggtgtatt i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I a score=-254649.000000 s hg19.chrUn_gl000223 47108 40 + 180455 CCAAGATG--A-----------------TCTGTC--AA------------AGAC-TACTAT---TAACTGTATTCCT--- s tarSyr1.scaffold_155717 4567 45 + 5780 ACAATGAG--GTA--------TGGTC--TCTATC--AA------------AGAC-T--TAT---TAATTGCATTCCT--- i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 184918 40 - 134511895 CCAAGATG--A-----------------TCTGTC--AA------------AGAC-TTCTAT---TAACTGTATTTCT--- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212125 40 - 136387465 CCAAGATG--A-----------------TCTGTC--AA------------AGAC-TACTAT---TAACTGTATTCCT--- i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1159 40 + 8399 CCAAGATG--A-----------------TCTGTC--AA------------AGAC-TACTAT---TAACTGTATTCCT--- i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174357 40 - 135371336 CCAAGATG--A-----------------TCTGTC--AA------------AGAC-TACTAT---TAACTGTATTCCT--- i panTro2.chr12 C 0 C 0 s dipOrd1.scaffold_79724 1027 37 + 3406 ATGAAGTGTAA-----------------TTTGTT---A------------AGAC-TCATAT-------TACATTTCT--- i dipOrd1.scaffold_79724 I 3 C 0 s cavPor3.scaffold_248 212612 36 + 667635 ATGAGGTGT-A-----------------CGTGTT----------------AGGC-TCACTT------ATGAACTCCT--- i cavPor3.scaffold_248 I 2 C 0 s speTri1.scaffold_137548 55517 32 + 100761 ACAAAGTGAGA-----------------TCTGTC---A------------AAACGTCCCATCAA---------------- i speTri1.scaffold_137548 I 3 N 0 s equCab2.chr8 64133262 44 - 94057673 ATGAGGCA--A-----------GATC--TCCCTC--AG------------AGAC-TCATGT---TAACTCCATGCCT--- i equCab2.chr8 I 3 C 0 s felCat3.scaffold_141210 71130 44 - 81011 aagaggta--a-----------ggtc--tctgtc--aa------------agac-taatat---taactccaatcct--- i felCat3.scaffold_141210 I 3 C 0 s canFam2.chr26 3176981 45 + 42029645 aagaggtg--a-----------gatc--tctgtc--aa------------agacttggtat---gaactccattcct--- i canFam2.chr26 I 3 C 0 s bosTau4.chr17 29953857 40 - 76506943 ATGA------A-----------GATC--TCTGTC--AA------------AGAC-TAACAT---TAACACCATTCTT--- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 94954 41 - 3408981 GACGTATG--A-----------------TCTCCATCAA------------AAAC-TCATAC---TAGGTATATTTC---- i loxAfr3.scaffold_113 I 5 I 1629 s choHof1.scaffold_59997 8237 40 + 12755 GACATATG--A-----------------TCTGCA--AA------------ACAT-TCATAT---TACTTGCATTCCT--- i choHof1.scaffold_59997 I 2 C 0 s tetNig2.chrUn_random 51483407 26 - 107808587 CTG-----------------------------------------------AATG-ATTTCC---CACATGCTTTACA--- i tetNig2.chrUn_random I 9 I 5 s fr2.chrUn 102955896 26 - 400509343 CTA-----------------------------------------------AAAC-CTCTCC---CACATGTTACACA--- i fr2.chrUn I 9 I 5 s gasAcu1.chrXIII 16762726 26 + 20083130 CTG-----------------------------------------------AAAC-ATCTTT---CACATATTTTACA--- i gasAcu1.chrXIII I 9 I 5 s oryLat2.chr17 11088599 26 + 31848461 CTG-----------------------------------------------AAAC-CCTTTT---GACATATTTCACA--- i oryLat2.chr17 I 9 I 5 s danRer6.chr4 43764422 35 - 71658100 --------------------------------------GATGATTGGCGGAAAC-TCTTTC---CACACTGAGTGCA--- i danRer6.chr4 I 2 I 5 s xenTro2.scaffold_1199 21213 44 + 134240 -----------CCT------TTGATG--CCGATC--AAGTTG--------AGAT-TTGTTT---GAAAAACATTTCC--- i xenTro2.scaffold_1199 C 0 n 0 s petMar1.Contig2426 25943 49 - 37044 -------------ttaagatttgatgaatctgaa--aa------------tgcc-ttccca---cacacacagcacttgc i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e otoGar1.scaffold_101698.1-26550 4432 337 + 26550 I a score=1958792.000000 s hg19.chrUn_gl000223 47148 262 + 180455 AGGATTTTTTTACTGTATGAGTTCTCTGATG-ATTGATGAGCTGTGACTTCTGTGAGAAAGCTTTCCCACATTCAATGCATCGATAAGGCTTCTCTCCTGTATGAATTCT---CTGATG--ATTAACCA---GCTGTGACTTCTG-A-------GAGAAGGC--CTTCCTACATTCACTGCATCCATAGGGTTTCTCACCCGTATGTGTCCTTTGATGTGGTATAAGGTGTGACTTCCGAGAGAAAGCTTTGCCACACTCACTGCATTCAAAAGGCTTCTC s tarSyr1.scaffold_155717 4612 262 + 5780 AGGCTTTCTTTACTGTATGCGTCCTCTGGTG-GTTAATGAGCTGTGACTTCTGTGAAAAAGCTTTCCCACATTCACCGCATTGATAAGGCTTCTCTCCTGTATGAATTCT---CTGGTG--ATTAACAA---GCTGTGACTTTTG-A-------GAGAAAGC--CTTCCTACATTCATTGCACCCATAAGGTTTCTCACCGGTATGTGTCCTCTGATGTGGTATAAGGTGTGACTTTCGAGAGAAGGCTTTGCCACATTCGTTGCATTCAAAAGGTTTCTC i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 184958 262 - 134511895 AGGATTTTTTTActgtatgagttctctgatg-attgatgagctgtgacttctgtgaaaaagctttcccacattcaatgcattgataaggcttctctcctgtatgaattct---ctgatg--attaacca---gctgtgatttctg-a-------gagaaggc--cttcctacattcactgcatccgtagggtttctcacctgtatgtgtcctttgatgtggtataaggtgggacttccgagagaaagctttgccacactcactgcattcaaaaggcttctc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212165 262 - 136387465 AGGATTTTTTTACTTTATGAGTTCTCTGATG-ATTGATGAGCTGTGACTTCTGTGAGAAAGCTTTCCCACATTCAATACATTGATAAGGCTTCTCTCCTGTATGAATTCT---CTGATG--ATTAACCA---GCTGTGACTTCTG-A-------GAGAAGGC--CTTCCTACATTCACTGCATCCATAGGGTTTCTCACCCGTATGTGTCCTCTGATGTGGTATAAGGTGCGACTTCCGAGAGAAAGCTTTGCCACACTCACTGCATTCAAAAGGCTTCTC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1199 262 + 8399 AGGATTTTTTTACTGTATGAGTTCTCTGATG-ATTGATGAGCTGTGACTTCTGTGAGAAAGCTTTCCCACATTCAATGCATCGATAAGGCTTCTCTCCTGTATGAATTCT---CTGATG--ATTAACCA---GCTGTGACTTCTG-A-------GAGAAGGC--CTTCCTACATTCACTGCATCCATAGGGTTTCTCACCCGTATGTGTCCTCTGATGTGGTATAAGGTGTGACTTCCGAGAGAAAGCTTTGCCACACTCACTGCATTCAAAAGGCTTCTC i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174397 262 - 135371336 AGGATTTTTTTACTGTATGAGTTCTCTGATG-ATTGATGAGCTGTGACTTCTGTGAGAAAGCTTTCCCACATTCAATGCATCGATAAGGCTTCTCTCCTGTATGAATTCT---CTGATG--ATTAACCA---GCTGTGACTTCTG-A-------GAGAAGGC--CTTCCTACATTCACTGCATCCATAGGGTTTCTCACCTGTATGTGTCCTTTGATGTGGTATAAGGTGTGACTTCCGAGAGAAAGCTTTGCCACACTCACTGCATTCAAAAGGCTTCTC i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 212648 262 + 667635 AGGACTTTGGTCCTGTGTGAGTTCTATGGTG-GTTAATGAGCTGTGACTTCTGGGAAAATGCCCTCCCACACTCACTGCACTGATAAGGTTTCTCTCCTGTGTGAATCCT---TTGATG--GTTCACAA---GTTGTGACTTTTG-C-------GAGAAGGC--TTTCCTACACTCACCGCAGCCATAAGGCCTCTCACCTGTGTGTGTCCTTTGATGCGGAATGAGGTGTGACTTCCGAGAGAAGGCTTTGCCACACTCCCTACATTTGAAGGGTTTCTC i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1064 187 + 3406 AAGATTTATTTCCCAAATGAGTTCTCTGATG-ATTAATGAGTTGTGATTCCTG----AAAGCTTTTGCATATTCACTGCAATGATAAGGCTTATCTCCTGTATGAATTTG---CTAGTG--GTTAACAA---GC--TGACACCTG-A-------GTAAAAGC--TTTCCTA-ACTCACTACATCTACAGGGCTTCTCCCCTGTATG---------------------------------------------------------------GAATGGT----- i dipOrd1.scaffold_79724 C 0 C 0 s equCab2.chr8 64133306 262 - 94057673 AGGACTTCTTTCCTGTGTGAGTTCTCTGATG-GTTAATGAGCTGTGACTTCTGGGAAAAGGCCTTCCCACATTCCGTGCATTGATAAGGCTTCTCTCCGGTGTGAATTCT---CTGATG--ATTAACAA---GCTGTGACTTCTG-A-------GAGAAGGC--CTTCCTACACTCGCTGCACCCGTAGGGCTTCTCTCCTGTGTGTGTCCTCTGATGTGGGATGAGGTGTGATTTCCGAGAGAATGCCTTGCCACACTCCCTGCATTCGAAGGGCTTCTC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 71174 262 - 81011 aggatttctttgctgtatgagttctctggtg-attaatgagctgtgacttttgggagaaggctttcccacattcatggcattggtaaggtttctctcctgtatgaattct---ctggtg--gttaacaa---gctgtgacttctg-a-------gagaaggc--cttcctacattcgctgcatccgtagggcttctccccagtgtgtgtcctctggtgcggtatgaggtgtgatttccgagagaaggcttttccacattcgctgcattcaaagggtttctc i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3177026 262 + 42029645 aggaattcttcactgtatgagttctctggtg-attaatgagctgtgacttttgggagaaggctttcccacattcatggcactggtaaggcttctctcctgtgtgaattct---ctggtg--attaacaa---gctgtgacttctg-a-------gagaaggc--tttcctacattcgctgcagccgtagggcttctctccagtgtgtgtcctctgatgtggtattaggtgtgatttccgagaaaaggttttgccacacacgctgcattcaaagggtttctc i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29953897 262 - 76506943 AGGATTTCTTTACTGTATGAGTTCTCCGATG-ATTAATGAGCTGTGACTTTTGGGAGAAGGCTTTCCCACATTCACTGCATTGAAAAGGTTTCTCTCCTGTATGGATTCT---CTGATG--ATTAACAA---GCTGTGACTTCTG-A-------GAGAAGGC--CTTTCTACATTCACTGCAACTGTAGGGTCTCTCTCCCGTGTGTGTCCTCTGATGTGGTATGAGGTGTGACTTCCTAGAGAAGGCTTTGCCACAGTCGTTGCATTCAAAGGGTTTCTC i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_59997 8277 262 + 12755 AGGACTTCTTTACTCTATGAGTTCTCTGATG-ATTAATGAGCTGTGACTTCTGGGAAAAGGTCTTCACACATTCATTACACTGAAAAGGTTTCTCTCCTGTATGAATTCT---CTGATG--GTTAACAA---GCTGTGACTTCTG-A-------GAAAAGGC--CTTCTTACATTCACTGCATCCATAGGGTTTCTCACCTGTATGTGTCCTCTGATGTGGTATGAGGTGTGACTTCCGAGAGAAGGCTTTGCCACATTCACTGCATTCAAAGGGTTTCTC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 189593 262 + 553670 ATGGTTTCTCCCCTGTGTGGGTTTTGTAATG-ATTTTTAAGCTTAGATCGCTTTGTAAAACATTTCCCGCATTCTGAACAAGAATAAGGTTTCTCCCCTGTGTGAATTCT---CTGATG---------C---ACTGTAAGGTCTG-ATGAAGTGGCAAAACG--TTTCCCACATTCAGAACAAGAGTATGGTTTCTCCCCTGTGTGAGTTCTGTGATGAACTTTAAGTTGTGAACGTGTTAAAAAACTTTTCCCACATTCAGAACAAGAAAAAGGTTTCTC i xenTro2.scaffold_677 n 0 C 0 s tetNig2.chrUn_random 51483438 262 - 107808587 ACGGTTTCTCACCGGTGTGACTTCTCATGTGCACATTTAAAGCACCGTTCCTGGA-GAAagctttcccacatgttttacatttgtatGGTTTCTCGCCTGTGTGAACTCT---AATGTG-CTTAGTTAATATATCATTAC---TG-----------GAAAAcgatttcccacatgttttacagaCGTACGGCCTTTCGCCTGTATGACTTCTCATGTGGATGGTTAATGCAGAGTTATGTTTGAAagctttcccacatgttttgcACACATAGGGTTTCTC i tetNig2.chrUn_random I 5 C 0 s fr2.chrUn 102955927 265 - 400509343 ATGGCTTGTGTCCCATGTGAATTTTTATATGTACTGATAAGTCATTGTTAGCTGG-GAAACATTTCCCACATATTTTACAACGGTATGGCTTCTCACCAGTGTGGGCTCTCCGAATGTG-AACGGTCAA---ATCACTACG-TTG-T-------ATGAAATC--TTTTCCACATGTTTCACAAACATAAGGTTTTTCACCACTGTGGATTCTTAAATGAAGGTTCAGTGATGATCTCTGACTAAAGTTTTtagagcagaagctgcaggaatACGGCTTCTC i fr2.chrUn I 5 C 0 s gasAcu1.chrXIII 16762757 262 + 20083130 ATGGCTTCTCCCCGGTATGGATTCTTGTATG-AGACCTCAAATGTGATTTGCGAGTGAATGTTTTCCCACAGGTGATGCATGAATATGGCTTCTCCCCAGTATGAATTCT---TATATGAGGCCTCAAA---CTTGATGC--TTG-A-------CTGAATGT--TTTCCCACAGGTGATGCAGGAATGTGGCTTCTCCCCAGTATGGACTCTTGTATGAACCTTCAAATGTGATTTAGTAGGGAATGTTTTTCCACATGTGATGCAAGGATGTGGCTTCTC i gasAcu1.chrXIII I 5 C 0 s oryLat2.chr17 11088630 262 + 31848461 AATGCCTTAAActtgtgtgagttctcatatg-ACAAGTAAAACTTCTCAAGGAGGCAAAAGCTTTCTTACAAATGTCACACGGAAAAAGCTTCTCAGCTGTGTGAGTTCC---TGCGTG-GGCTTTTAA---GTCACTAC--CTGTA-------GTGAAACC--TTTTCCACATACTTCACAAGTGAAAGGCCTCtcacctgtgtgaattctcatgtgaacTTTTAAGGAAGAATTATGAGCAAAAtttttttCACAGactttacaagaataaggcctttc i oryLat2.chr17 I 5 C 0 s danRer6.chr4 43764462 262 - 71658100 ATGGTTTCTCTCCAGTGTGGATTTTCATGTG-ACTGTTAAGGTGTGACAATTGGTTGAAACTCTTCCCACACTGAGTGCATGTGAATGGTTTCTCTCCTGTGTGGATTTT---CATGTG--TTTATTAA---GGTGTGACGATTG-G-------TTGAAACT--TTTCCCACACTGGGTGCATGTGAATGGTTTCTCTCTAGTGTGGATCCTCATGTGTTTATTAAGGTATGATGATTGGCTGAAACTCTTCCCACACTGAGTGCATGTGAATGGTTTCTC i danRer6.chr4 I 5 C 0 s petMar1.Contig2426 25992 262 - 37044 aAGGTTTCTCTCCGGTGTGTGTTctatggtg-ttttttaagatgtgattcatctgaaaatgccttcccacacacactgcacttgaagggtttctctcctgtgtgtgatcT---CTGGTG--CCTTTGAA---GATATGATGACCG-T-------GTGAACac--ctttccacacacagtgcacttgaagtgTTTCTCTCCTCTGTGTGTTCTTTGGTGTTTTTGAAGATCTGATGACTTTGCAAACGCTTTATCGCACAAGAGGCACCTGAAGGGTTCctc i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e otoGar1.scaffold_101698.1-26550 4432 337 + 26550 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=223351.000000 s hg19.chrUn_gl000223 47410 45 + 180455 TCCTGTATGTATTCTCTGATGATT-GATGAGA---------CTTGACT--TCTCC-CT s otoGar1.scaffold_101698.1-26550 4769 45 + 26550 TCCTGTATGTATTCTCTGATGATT-AATGAGA---------CTTGATT--TCTCT-CT i otoGar1.scaffold_101698.1-26550 I 337 C 0 s tarSyr1.scaffold_155717 4874 45 + 5780 TCCTGTATGTATCCTGTGATGATT-AATGAGA---------CTTGACT--TCTCT-CT i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185220 45 - 134511895 tcctgtatgtattctctgatgatt-gatgaga---------cttgact--tctcc-ct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212427 45 - 136387465 TCCTGTATGTATTCTCTGATGATT-GATGAGA---------CTTGACT--TCTCC-CT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1461 45 + 8399 TCCTGTATGTATTCTCTGATGATT-GATGAGA---------CTTGACT--TCTCC-CT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174659 45 - 135371336 TCCTGTATGTATTCTCTGATGATT-GATGAGA---------CTTGACT--TCTCC-CT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 212910 45 + 667635 TCCTGTGTGTATTCTTCGATGGTT-GATGAGA---------CTTGACT--TCTCT-CT i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1251 18 + 3406 --------------------------ATAAGG---------TTTGACT----TCA-CT i dipOrd1.scaffold_79724 C 0 C 0 s equCab2.chr8 64133568 45 - 94057673 TCCTGTGTGTGTTCTCTGATGATT-GATGAGA---------CTTGACT--TCTCC-CT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 71436 45 - 81011 tcctgtatgtgttctctgatgatt-gatgaga---------cttgact--tctcc-ct i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3177288 45 + 42029645 tcctgtgtgtgttctctgatgatt-gatgagg---------cttgact--tctcc-ct i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29954159 45 - 76506943 TCCTGTATGTGTCCTCTGATGATT-TATGAGA---------CTTGACC--TCTCC-CT i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_59997 8539 45 + 12755 TCCTGTATGTATTCTGTGATGATT-AATGAGA---------CTCGACT--TCTCC-CT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 189855 45 + 553670 CCCTGTGTGGGTTTTCCGATGAAG-TTCAAGG---------TGAGATT--GGTGC-AA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483700 45 - 107808587 AGttgtgtgaactctcatgtgccTGGTTAACG---------TAGAACT--TTGACC-- i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102956192 44 - 400509343 ACCCgtgtgtgttctcaggtgtTT-CTGAAAG---------TTTGCCT--TTGACT-- i fr2.chrUn C 0 I 11237 s gasAcu1.chrXIII 16763019 43 + 20083130 CCCAGTATGGCTTCCTATATGATA-CTTCAAA---------TGTGAGG--TAGTA--- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088892 45 + 31848461 acctgtgtgagtCCTCATGTGGAC-CTTTAAGG-------CTCTGCTG--TCCAT--- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43764724 45 - 71658100 TCCAGTGTGGATTTTCATGTGATC-GTTAAGG---------TGTGATGATCTGTT--- i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 26254 45 - 37044 tcccatgtgtgttctctggtgccg-ttTAAGAGGCAATGAACCTGA------------ i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=241563.000000 s hg19.chrUn_gl000223 47455 25 + 180455 GAAGGCTTTTCTACATTCAT--TGCAT s otoGar1.scaffold_101698.1-26550 4814 25 + 26550 AAAGGCTTTTCTACATTCAC--TGCAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 4919 25 + 5780 GAAGGCTTTTCTACATTCAT--TGCAT i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185265 25 - 134511895 gaaggcttttctacattcat--tgcat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212472 25 - 136387465 GAAGGCTTTTCTACATTCAT--TGCAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1506 25 + 8399 GAAGGCTTTTCTACATTCAT--TGCAT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174704 25 - 135371336 GAAGGCTTTTCTACATTCAT--TGCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 212955 25 + 667635 GAAGGCTTTTCTGCACTCAC--TGCAT i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1269 25 + 3406 GAAGGCTTTTCTACATTGAT--TGCAT i dipOrd1.scaffold_79724 C 0 C 0 s equCab2.chr8 64133613 25 - 94057673 GAAGGCTTTCCTACATTCAG--GGCAT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 71481 25 - 81011 aaaggctttcccacattcgc--tgcat i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3177333 25 + 42029645 gaaagctttcccacactcgc--tgcat i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29954204 25 - 76506943 GAAGGCTTTCCTACATTCAC--TGCAT i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_59997 8584 25 + 12755 GAAGGCTTTTCTACATTCAT--TACAT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 189900 25 + 553670 GAAATTTTTCCCACACTCAG--AACAA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483745 25 - 107808587 AAAacttttcccacatgttt--tacac i tetNig2.chrUn_random C 0 T 1008 s fr2.chrUn 102967473 25 - 400509343 GAAAGCCTTCCTGCATGTTT--TGCAA i fr2.chrUn I 11237 C 0 s gasAcu1.chrXIII 16763062 27 + 20083130 GGGAATGTTTTCCCACAGGTGACGCAG i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088937 25 + 31848461 GAAACCCTTTTGACATAGTT--CACAA i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43764769 25 - 71658100 GAAACTCCTCCCACACTGAG--TGCAT i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 26299 25 - 37044 AAATACCTTACCACACAaac--tgcac i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=760502.000000 s hg19.chrUn_gl000223 47480 84 + 180455 TCATAAGGTTTTTCTCCTGTATGAGTTCTCAGATGTCTAATTAG---CTCCGACTTCTCAAAAAAAGCTTTCCTACAAAGACTGCAT s otoGar1.scaffold_101698.1-26550 4839 84 + 26550 TCATAAGGTTTTTCACCTGTATGAGTTCTCTGATGTCTAATAAG---CTCTGACTTCTCAAAGAAAGCTTTCCTACAAAGACTGCAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 4944 84 + 5780 TCATAAGGTTTCTCTCCTGTATGAGTTCTTTGATGTCTAATTAG---CTCTGACTTCTCAAAGAAAGCTTTCCGACAAAGACTGCAT i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185290 84 - 134511895 tcataaggtttttctcctgtatgagttctcagatgtctaattag---ctccgacttctcaaaaaaagctttcctacaaagactgcat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212497 84 - 136387465 TCATAAGGTTTTTCTCCTGTATGAGTTCTCAGATGTCTAATTAG---CTCCGACTTCTCAAAAAAAGCTTTCCTACAAAGACTGCAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1531 84 + 8399 TCATAAGGTTTTTCTCCTGTATGAGTTCTCAGATGTCTAATTAG---CTCCGACTTCTCAAAAAAAGCTTTCCTACAAAGACTGCAT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174729 84 - 135371336 TCATAAGGTTTTTCTCCTGTATGAGTTCTCAGATGTCTAATTAG---CTCTGACTTCTCAAAAAAAGCTTTCCTACAAAGACTGCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 212980 84 + 667635 TCATAAGGTTTTTCTCCTGTATGAGTTCTCTGATGTCTAATTAA---CTCTGATTTCTCAAAGAAGGTCTTCCTACAAAGACTGCAC i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1294 84 + 3406 TCATAAGGTTTTTCTCCTGTGTGAGTTCTCCAATGTCTAATTAG---CTTTGCCTTCTCAAAGAATGCTTTTGTGCAAAGGTCTCAT i dipOrd1.scaffold_79724 C 0 C 0 s equCab2.chr8 64133638 84 - 94057673 TCGTAAGGTTTTTCTCCTGTGTGAGTTCTCTGATGTCTAATTAG---CTCGGATTTCTCAAAGAAAGCTTTCCCACAAAGACTGCAC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 71506 84 - 81011 tcataaggtttttctcctgtatgagttctctgatgtctaattag---ctcagatttctcaaagaaagctttcctgcaaagactgcat i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3177358 84 + 42029645 tcatatggtttttctcctgtgtgagttctttgatgtctaattaa---ttctgatttctcaaagaaagctttcctacaaagactgcat i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29954229 84 - 76506943 TCATAAGGTTTTTCTCCTGTATGAGTTCTCTGATGTCTAATTAG---TTCTGATTTTTCAAAGAAAGCTTTTTGACAAAGACTGCAT i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_59997 8609 84 + 12755 TCATAAGGTTTTTCCCCTGTATGAGTTCTCTGATGTCTAATTAG---CTCTGATTTCTCAAAGAAAGCTTTCCTACAAAGACTGCAT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 189925 84 + 553670 GAAAAACGTTTCTCTCCTATGTGGGTTTGTCGATGGGCAGTGAG---TTCTGACGAAGTAGCAAAACATTTCCCACATTTAGAACAA i xenTro2.scaffold_677 C 0 C 0 s fr2.chrUn 102967498 84 - 400509343 ACATACGGCTTCTCACCCGTGTGGATTCTCATGTGGTGTGACAA---ATTCCGGTTTGAACTTAAATTCTTCCCACATATTTTGCAA i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16763089 84 + 20083130 GAATAAGGACTCTCCCCAGTATGAATTCTCATATGAGACTTCAA---ATGTGAGTTGCGAGTGAATGCTTTCCCACAGGTTTTGCAA i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11088962 84 + 31848461 GTAAAAGGcctttcacctgtgtgagttctcatgtgacaGGTCAATCTATTTGCAT---GGATGAAGGTTTTCTTACAAATGTCACAG i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43764794 84 - 71658100 GTGAATGGTTTCTCTCCAGTGTGGATTTTCATGTGTTTATTAAG---GGTTGATGATCGGTTGAAACTCTTCCCACACTGAGTGCAT i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 26324 84 - 37044 ttgaaaggtttctctgctgtgtgtgttctctcgtggatctgaag---acctgatgaccatgcaaatgccttctcacacacagtgcac i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I e tetNig2.chrUn_random 51483770 1008 - 107808587 T a score=237485.000000 s hg19.chrUn_gl000223 47564 21 + 180455 TCATAGGGTTTCTCTCCAGTG s otoGar1.scaffold_101698.1-26550 4923 21 + 26550 TCATATGGTTTCTCCCCTGTG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 5028 21 + 5780 TCATAGGGTTTCTCTCCTGTG i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185374 21 - 134511895 tcatagggtttctctccagtg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212581 21 - 136387465 TCATAGGGTTTCTCTCCAGTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1615 21 + 8399 TCATAGGGTTTCTCTCCAGTG i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174813 21 - 135371336 TCATAGGGTTTCTCTCCAGTG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 213064 21 + 667635 TCATAGGGTTTCTCTCCAGTG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1378 21 + 3406 TTATAGGCTTTCTCTTCTGTA i dipOrd1.scaffold_79724 C 0 C 0 s equCab2.chr8 64133722 21 - 94057673 TCATAGGGTTTCTCTCCGGTG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 71590 21 - 81011 tcgtagggtttctctcctgtg i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3177442 21 + 42029645 tcatagggtttctctcctgtg i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29954313 21 - 76506943 CCATATGGTTTCTCTCCTGTA i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_59997 8693 21 + 12755 ACATAAGGTTTCTCCCCTGTG i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 190009 21 + 553670 AGAAATGTCTTTTCTTCTTTG i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51482762 21 - 107808587 TCAAAGGCTTTCTCATCTGTG i tetNig2.chrUn_random T 1008 C 0 s fr2.chrUn 102967582 21 - 400509343 CCATATGGCTTCTTACCTGTA i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16763173 21 + 20083130 GAATAAGGCCTTTCCCCAGTG i gasAcu1.chrXIII C 0 I 3796 s oryLat2.chr17 11089046 21 + 31848461 GAATAAGGCCTCtcacctgtg i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43764878 21 - 71658100 GTGAATGGTTGCTCTCCAGTG i danRer6.chr4 C 0 C 0 s sorAra1.scaffold_196587 0 7 + 15804 --------------TCCTGTG i sorAra1.scaffold_196587 N 0 C 0 s petMar1.Contig2426 26408 21 - 37044 ttgaaatgtttctctcctgtg i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=1209531.000000 s hg19.chrUn_gl000223 47585 122 + 180455 TGAATTCTCTGATGGGTATTTAGCTGTGATTTCTGGGAGAAAGCTTTTTCACAGTCCCTGCATTCATAC-GGTTTTTCTCCAGTATGAGTTCTCTGATGAGTTGCAAGACTTGACTTCTCACC s otoGar1.scaffold_101698.1-26550 4944 122 + 26550 TGAATTCTCTGGTGTGTATTTAGCTGTGACTTCTGGGAGAAGGCTTTTTCACATTCCCTACATTCATAG-GGCTTTTCTCCTGTATGAGTTCTCTGATGAGTCGCAAGACTTGATTTTTCACC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 5049 122 + 5780 TGAATTCTCTGATGGGTATTTAGCTGTGATTTCTGGGAGAAGGCTTTCTCACAGTCCCGGCATTCATAA-GGCTTTTCTCCTGTGTGAGTTCTCTGATGAGTTGCCAGACTTGACTTCTCACC i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185395 122 - 134511895 tgaattctctgatgggtatttagctgtgatttctgggagaaagctttttcacagtccctgcattcatat-ggtttttctccagtatgagttctctgatgagttgcaagacttgacttctcacc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212602 122 - 136387465 TGAATTCTCTGATGGGTATTTAGCTGTGATTTCTGGGAGAAAGCTTTTTCACAGTCCCTGCATTCATAT-GGTTTTTCTCCAGTATGAGTTCTCTGATGAGTTGCAAGACTTGACTTCTCACC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1636 122 + 8399 TGAATTCTCTGATGGGTATTTAGCTGTGATTTCTGGGAGAAAGCTTTTTCACAGTCCCTGCATTCATAC-GGTTTTTCTCCAGTATGAGTTCTCTGATGAGTTGCAAGACTTGACTTCTCACC i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174834 122 - 135371336 TGAATTCTCTGATGGGTATTTAGCTGTGATTTCTGGGAGAAAGCTTTTTCACAGTCCCTGCATTCATAC-GGTTTTTCTCCAGTATGAGTTCTCTGATGAGTTGCAAGACTTGACTTCTCACC i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 213085 122 + 667635 TGAATCCTCCGATGAGTGTTTAACTGTGACTTCTGGGAAAAGGCTCTGTCACAGTCCCTGCATTCATAG-GGTTTTTCTCCCGTGTGAGTCCTCTGATGAGTTGCTAGACTTGACTTCTCACC i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1399 120 + 3406 TGAATTACCCAGTGAGTATTTAGCTGTGACTTCTGAG---AGGCTTTTTCATATTCCCTACATTCATAGCATTTTTTCTCCTGTATGAGTTCTCTGATGAGTTGCAAGACTCGACTTCTCACC i dipOrd1.scaffold_79724 C 0 C 0 s bosTau4.chr17 29954334 122 - 76506943 TGAATTCTCTGGTGAGTATTGAGCTGTGACTTCTGGGAGAAGGCTTTTTCACAGTCCCTGCATGCATAA-GGTTTTTCTCCTGTATGGGTTCTCTGATGTGTTGCAAGGCTTGACTTTTCACC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3177463 122 + 42029645 tggattctctggtgagtgttcagttgtgacttctgggagaaggctttttcacaatccctgcacccgtat-ggtttttctcccgtatgagttctctggtgagttgcaagacttgacttctcacc i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 71611 122 - 81011 tggattctctggtgagtattgagctgtgacttctgggagaaggctttttcacaatccctgcacccgtat-ggtttctctcctgtatgagttctctggtgagttgcgagactggacttctcacc i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64133743 122 - 94057673 TGGATTCTCTGGTGGGTATTGAGCTGTGACTTCTGGGAGAAGGCTTTTTCACAATCTCTGCACTCGTAG-GGTTTTTCTCCTGTATGAGTCCTCTGATGAGTTGCAAGACTTGACTTCTCCCC i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 7 122 + 15804 TGAATTCTCTGGTGAGTATTAAGCTGTGACTTCTGGGAAAAGGCTTTTTTACAGTCCCACCACTGAAAA-GGCTTTACTCTAGTATGAGTTTTCTGATGAGTTGCAAGACTTGACTTTTCACC i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 8714 122 + 12755 TGAATTCTCTGGTGAGTATTGAGTTGTGATTTCTGAGAGAAGGCTTTTTCACAGTCCCTACATTCATAG-GGTTTTTCTCCTGTATGAGTTCTTTGATGAGTGGCAAGACTTGACTTCTCACC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 190030 122 + 553670 TGGGTTCGTTGATGACGAGCGCGGTTGGATCGATCGGAGAAACATTTCCCACATTCAGAACAAGAAAAT-GGTTTCTCCCCTGTGTGGGTTCTCTGATGTTTATCAAAGTCTCTTTTGTGACT i xenTro2.scaffold_677 C 0 I 6764 s tetNig2.chrUn_random 51482783 120 - 107808587 TGACCTCTCATGTGGACAGTTAAGGTACAACGTTGAGAGAAcgctttcccacatgttttacaactATAC-TGTTTCTCGCCTGTGTGACTTCTCATATGGACAGTTAA--TGCATACCTCTGC i tetNig2.chrUn_random C 0 I 2 s fr2.chrUn 102967603 120 - 400509343 TGGACTTTCATATGTTCTGTCAAGTTATTTCGAAGTCTGAAAGTTTTCCCGCATGCGTTACAAATGTAT-GGCTTTTCACCTGTGTGGATTTTTAAATGATCTGACAA--TTTACTGCTTTgt i fr2.chrUn C 0 I 2 s gasAcu1.chrXIII 16766990 120 + 20083130 TGAATTCTTATATGAGACTTCAAATGTGATGTCTGAGTGAACGTTTTCCCACAAGTAATGCAAGAATAT-GGCCTTTCCCCAGTGTGAATTCTTGTATGAAACTTCAA--TAAATCTCTCCGA i gasAcu1.chrXIII I 3796 I 2 s oryLat2.chr17 11089067 117 + 31848461 tgaattctcatgtgaaTATTTAAGTGAGAAggttgaataaaacatttttgacaaactttacaagaataa-ggcctctcgcctgtgtgagttttcatATGACAGGTC-----AAATTCCTTAAG i oryLat2.chr17 C 0 I 5 s danRer6.chr4 43764899 120 - 71658100 TGGATCCTCATGTGAAGATTAAGGTATGATGAGCAGCTGAAACTCTTCCCACACTGAGTGCATGTGAAT-GGTTTCTCTCCAGTGTGGATCATCATGTGAATCTTAAG--ATGGCCTTTTCTT i danRer6.chr4 C 0 I 2 s petMar1.Contig2426 26429 122 - 37044 tgcgttctctggtggatctgaaaacctgatgaccatgcaaattccttctcacacacagtgcacttgaaa-ggtttctctcctgtgtgcgttctctgatgtattttaagatgtgatgaatcTGC i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=1113411.000000 s hg19.chrUn_gl000223 47707 106 + 180455 AAAGGCCTTCCCACATTCACTGCATTCATAGGGTTTCTCCCCTGTATGTGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCACATTCACTG s otoGar1.scaffold_101698.1-26550 5066 106 + 26550 AAAGGCCTTCCCACATTCAGTGCATTCATATGGTTTCTCTCCTGTATGCGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCACAATCACTG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 5171 106 + 5780 AAAGGCTTTCCCACATTCGGTGCATTCATAGGGTTTCTCTCCGGTATGTGT---CCTCTGATGGGAAATGAGATGTGACTTCT----GACAAAATGCTTTCCCACATTCACTG i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185517 106 - 134511895 aaaggccttcccacattcagtgcattcatagggtttctcccctgtatgtgt---cctctgatgtgatatgagatgtgacttct----gacaaaaggctttcccacattcactg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212724 106 - 136387465 AAAGGCCTTCCCACATTCACTGCATTCATAGGGTTTCTCCCCTGTATGTGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCACATTCACTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1758 106 + 8399 AAAGGCCTTCCCACATTCACTGCATTCATAGGGTTTCTCCCCTGTATGTGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCGCATTCACTG i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 174956 106 - 135371336 AAAGGCCTTCCCACATTCACTGCATTCATAGGGTTTCTCCCCTGTATGTGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCACATTCACTG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 213207 106 + 667635 AAACGCTTTCCCACATTCAGTGCATTCATATGGTTTCTCTCCCGTGTGAGT---CCTCTGATGAGATATGAGATGAGACTTCT----GACAAAAAGCTTTCTCACATTCACTG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1519 102 + 3406 AAA--TTTTTCCAGACTCATTGCACTCATAGGGTTTCTCTCCAGTGTGTGG---CCTCTGGT--GATAGGAGGTGTGACTTCT----GAGAACAGGCTTTCCCACATTCACTA i dipOrd1.scaffold_79724 C 0 C 0 s bosTau4.chr17 29954456 106 - 76506943 AAAGGCTTTCCCACATTCACTGCATTCATAGGGTTTCTCTCCTGTGTGTGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCACACTCACTG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3177585 106 + 42029645 aaaggctttcccacactctgtgcattcatagggtttctctcctgtgtgagt---cctctggtgtgatatgagatgtgacttct----gacaaaacgccttcccacattcactg i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 71733 106 - 81011 aaaagctttcccacattcagtgcattcatagggcttctctcctgtatgagt---cctctgatgtgatatgagatgggacttct----gacaaaaggccttcccacactcactg i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64133865 106 - 94057673 AAAGGCTTTTCCACATTCAGGGCATTCATAGGGTTTCTCTCCTGTATGTGT---CCTCTGATGGGATATGAGATGTGACTTCT----GACAAAAGGCTTTCCCACATTCACTG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 129 100 + 15804 AAAGGCTTTCCCACATTCACTGCATTCATATGGTTTCTCT------TGTGT---CCTCTGATGGGATATCAGATGTGAGTTCT----GACAAAAAGCTTTTCCACATTCAGTA i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 8836 106 + 12755 AAAGGCTTTCCCACACTCACTGCATTCATAGGGTTTCTCTCCTGTGTGAGT---CCTCTGATGTGATATGAGATGTGACTTCT----GACAAAAGGCCTTCCCACATTCAGTA i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 196916 85 + 553670 AAAACATTTCCCACATTCAGAACAAGAATAAGGTTTCTCCCCTGTGTGGGTTCGTCTTTGATG-GATA------GTACATTCT----GATAAAGTG----------------- i xenTro2.scaffold_677 I 6764 I 449 s tetNig2.chrUn_random 51482905 106 - 107808587 GAAAGCTTTCcgacatgttttacacaaatatggtttctcacctgtgtgacc---tCTCACGTGGACATACAGCGCAGAACTTT----GTTTGAAagctttcccacatgtttta i tetNig2.chrUn_random I 2 C 0 s fr2.chrUn 102967725 106 - 400509343 gaaggcttttccacaagTCTTGCAAATATAAggcttctcacctgtgtggat---TCTCATGTGGCTTGACA----AATTCTTTTTCAGTCTGAActcttttccacatgtttta i fr2.chrUn I 2 C 0 s gasAcu1.chrXIII 16767112 104 + 20083130 GAATGTTTTCCCACAGGTGGTGCAAGAATATGGCTTCTCCCCACTATGAAT---TCTTGTATGAAACTTCAAATGTGATTTCA----GAGTGAATGTTTTCCCACAGGTGT-- i gasAcu1.chrXIII I 2 I 2076 s oryLat2.chr17 11089189 106 + 31848461 GAAGACTTTCTTACAAATATCACACGAAAAAGGGTTCTCAGCTGTGTGAGT---TCTTATGTGGGCTTTTAATTTAGACCTTT----GAGAAAAGGTTTTTCCACATACTTCA i oryLat2.chr17 I 5 C 0 s danRer6.chr4 43765021 106 - 71658100 AAAACTCTTTCCACACTGAGTGCATGTGAATGGTTTCTCTCCAGTATGGAT---CCTCATGTGAATCCTAAGATCGCCTTTTC----TTCCAAAACTCCTTCCACATTGAGTG i danRer6.chr4 I 2 I 19034 s petMar1.Contig2426 26551 106 - 37044 AAAGggcttcccgcacagagtgcacctgaagggtttctctcctgtgtgtgt---tctctggtgcattttaaaacaaaatgaac----tTGAAAATGTCTTTTCACACAaactg i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=945821.000000 s hg19.chrUn_gl000223 47813 93 + 180455 CATACATATGGTTTTTCTCCTGTATGAATTCTTTGATGATTAGTGAGACTTAATTTTTCACTGAAAGCTTTCCCACACTCACTGCATTCATAC s otoGar1.scaffold_101698.1-26550 5172 93 + 26550 CATACATAGGGTTTTTCTCCTGTATGAATTCTCTGATGATTAGTCAGACTTAATTTTTCACTAAAAGCTTTCCCACATTCACTGCATTTGTAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 5277 93 + 5780 CATACATAGGGCTTTTCTCCTGTGTGAATTCTCTGATGATTAGTGAGACTTAGTTTCTCACTGAAAGCTTTCCCACATTCACTGCACTCATAG i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185623 93 - 134511895 catacatatggtttctctcctgtatgaattctctgatgattagtgagacttaatttttcactgaaagctttcccacactcactgcattcatac i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212830 93 - 136387465 CATACATATGGTTTTTCTCCTGTATGAATTCTTTGATGATTAGTGAGACTTAATTTTTCACTGAAAGCTTTCCCACACTCACTGCATTCATAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1864 93 + 8399 CATACATATGGTTTTTCTCCTGTATGAATTCTTTGATGATTAGTGAGACTTAATTTTTCACTGAAAGCTTTCCCACACACACTGCATTCATAC i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 175062 93 - 135371336 CATACATATGGTTTTTCTCCTGTATGAATTCTTTGATGATTAGTGAGACTTAATTTTTCACTGAAAGCTTTCCCACACTCACTGCATTCATAC i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 213313 93 + 667635 CACACATAGGGTTTTTCTCCTGTATGAATTCTCTGATGATTAGTAAGACTTAACTTTTCACTGAAGGCTTTCCCACATTCACTGCACTCATAG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1621 89 + 3406 CACACACAGGGTTTTTCTCCTATATGAAT--TTTGATGATTAGTAAGAC--AATTTTTCACTGAAGGTTTTCCCACATTCACCACATTCATAG i dipOrd1.scaffold_79724 C 0 C 0 s bosTau4.chr17 29954562 93 - 76506943 CACACATACGGTTTTTCTCCTGTATGAATTCTCTGGTGATTAGTGAGGCTTAATTTTTCACTGAAAGCTTTCCCACATTCACTGCACTCGTAG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3177691 93 + 42029645 cagacatagggcttttctcctgtatgaattctctgatgattagtaaggcttaatttttcactaaaagctttcccacactcactgcattcatag i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 71839 93 - 81011 cacacataaggcttttctcctgtgtgaattctctgatgattagtaaggcttaatttttcactgaaagccttcccgcactcactgcattcatag i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64133971 93 - 94057673 CACACATAGGGTTTTTCTCCTGTATGAATTCTGTGATGGTTGGTGAGGCTTAATTTCTCACTGAAGGCTTTCCCACATTCACCACATTCGTAG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 229 92 + 15804 CACACATAGGGGTTTTTTCCTGTATGaattctctgatgattagtaagGCTTAATTTTTCACTGAAAGCTTTCCCACATTCACAACATTCAT-G i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 8942 93 + 12755 CATACGTAAGGTTTTTCTCCTGTATGAATTCTCTGATGATTAGTGAGGCTTAATTTTTCACTGAAAGCTTTCCCACATTCACTGCATTCATAG i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 197450 93 + 553670 CAAGAAAATGGTTTCACTCCTGTGTGAGTCCTTTGATGACGAGTAAATATAAATCGATCTGAGAAACATTTCCCACATTCAGAACAAGAAAAT i xenTro2.scaffold_677 I 449 I 175 s tetNig2.chrUn_random 51483011 93 - 107808587 caactatatggtttctcccctgtgtgaactctcatgtggaCGGTTAATGAGGAGGTTTCGTAGAATGATTTCCCACATGTACTACAGATGATT i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102967831 93 - 400509343 cagatATGCGGCTTCTCACCggtgtgaattctcatgtggctGGACAAATTTGCACTTTGTCTGAAATCTTTTCCACATGTGTTGCAAATGTAA i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16769292 93 + 20083130 CAGGAATATGGCTGCTCCCCAGTATGGATTTTTATATGAGCCTTCAAATTTGATGTCTTAGTGAATGTTTTCCCACAGGTGTTGCAAGAATAC i gasAcu1.chrXIII I 2076 I 1690 s oryLat2.chr17 11089295 93 + 31848461 CAAGTGAAAGGCCTCTCACCCGTGTGAGTTCTGATGTGGACACTTAAGGAAGACTTATAAGAAAACTGTTTCTCACAGAGTTCACAAGAATAA i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784161 63 - 71658100 CATGTCTACAATTCCTTTCCAGTGTGAATCCTCTCATGTGTTTTCAAAG--------------------TTCCTAAGTAAACC---------- i danRer6.chr4 I 19034 C 0 s petMar1.Contig2426 26657 93 - 37044 cacttgaaaggtttctctcctgtgtgtgttctctggtggatctgaagacCGGAtaaccatgcaaatgccttctcacagacagtgcacttgaag i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=2379505.000000 s hg19.chrUn_gl000223 47906 211 + 180455 GGTTTTTCTCCCG-TATGAGTTCTCTGATGTCTAA-----------CGAGCTGTGA--------------------------------TTTCCTGCTG--------------------------------------------AAGG-CTTTCC-CACATTTACTGCATATAAAGGGTTTTTCTCCTGTGTGTGTCATCTGATGTGATATGAGATGTGACTTCTGGGAGAAGGCCTTCCCACACTGAATGCATCCATGAGG-TTTCTCTCCTGTATGTGTTCTCTGATG-----ATTAATGAGACTCG s otoGar1.scaffold_101698.1-26550 5265 211 + 26550 GGTTTTTCTCCTG-TATGAGTTCTCTGATGTCTAA-----------CAAGCTGAGA--------------------------------TTTTCTGCTG--------------------------------------------AAGG-CTTTCC-CACATTTACTGCATACAAAAGGTTTTTCTCCTGTGTGTGTCATCTGATGTGATATGAGATGTGATTTCTGAGAGAAAGCTTTCCCACATTGAATGCATCCATGAGG-CTTCTCTCCTGTATGGGTTCTCTGATG-----ATTAATGAGACTAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 5370 211 + 5780 GGTTTTTCTCCCG-TATGAGTTCTCTGATGTCTGA-----------CAAGCTGAGA--------------------------------TTTCCTACTG--------------------------------------------AAGG-CTTTTC-CACATTTACTGCATACAAAGGGCTTCTCTCCGGTGTGTGTCATCTGATGGGATATGAGATGTGACTTCTGAGAGAAGGCTTTCCCACACTGAATGCATCCATGAGG-TTTCTCTCCTGTATGGGTTCTCTGATG-----ATTAATGAGACTTG i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185716 211 - 134511895 ggtttttctcccg-tatgagttctctgatgtctaa-----------cgagctgtga--------------------------------tttcctgctg--------------------------------------------aagg-ctttcc-cacatttactgcatataaagggtttttctcctgtgtgtgtcatctgatgcgatatgagatgtgacttctgggagaaggccttcccacactgaatgcatccatgagg-tttctctcctgtgtgggttctctgatg-----attaatgagactgg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 212923 211 - 136387465 GGTTTTTCTCCCG-TATGAGTTCTCTGATGTCTGA-----------CGAGCTGTGA--------------------------------TTTCCTGCTG--------------------------------------------AAGG-CTTTCC-CACATTTACTGCATATAAAGGGTTTTTCTCCCGTGTGTGTCATCTGATGTGATATGAGATGTGACTTCTGGGAGAAGGCCTTCCCACACTGAATGCATCCATGAGG-TTTCTCTCCTGTATGTGTTCTCTGATG-----ATTAATGAGACTCG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 1957 211 + 8399 GGTTTTTCTCCCG-TATGAGTTCTCTGATGTCTAA-----------CGAGCTGTGA--------------------------------TTTCCTGCTG--------------------------------------------AAGG-CTTTCC-CACATTTACTGCATATAAAGGGTTTTTCTCCTGTGTGTGTCATCTGATGTGATATGAGATGTGACTTCTGGGAGAAGGCCTTCCCACACTGAATGCATCCATGAGG-TTTCTCTCCTGTATGTGTTCTCTGATG-----ATTAATGAGACTCG i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 175155 211 - 135371336 GGTTTTTCTCCCG-TATGAGTTCTCTGATGTCTAA-----------CGAGCTGTGA--------------------------------TTTCCTGCTG--------------------------------------------AAGG-CTTTCC-CACATTTACTGCATATAAAGGGTTTTTCTCCTGTGTGTGTCATCTGATGTGATATGAGATGTGACTTCTGGGAGAAGGCCTTCCCACACTGAATGCATCCATGAGG-TTTCTCTCCTGTATGTGTTCTCTGATG-----ATTAATGAGACTTG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 213406 211 + 667635 GGTTTTTCCCCTG-TGTGAGTTCTCTGATGTCTAA-----------CAAGCTGGGA--------------------------------CTTTCTGCTA--------------------------------------------AAGG-CCTTTC-CACATTTACTGCATACAAAAGGCTTCTCTCCTGTGTGTGTCATCTGATGGGATATGAGGTGCGACTTCTGGGAGAACGCTTTCCCACACTGCAGACATTCATGGGG-CTTCTCTCCCGTGTGGGTTCTCTGATG-----ATTGATGAGGCTTG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1710 209 + 3406 GGTTTTTCTCCTGTTATGAGATCTCTGATGTCTAA-----------CAAGCTGGAA--------------------------------TTTTCTGCAG--------------------------------------------AAGG-CTTTTC-CACATTTGCTGTTTAAAAAGGGTTTCTCTCCTATGGGTATCATCTAATGTGATATGAGGTCTGGCTTCTGATAGAGTGCTTTCCCACTCTGTATGCATCTATGAGG-TTTCTTTCCTGTATGTATTCTCTGATG-----AT---GGAGACTTG i dipOrd1.scaffold_79724 C 0 C 0 s vicPac1.scaffold_179063 18 212 + 1228 GGTTTTTCTCCTG-TATGAGTTCTCTGATGTCTAA-----------CAAGCTGGGA--------------------------------TTTCCTACTG--------------------------------------------AAGGCCCTTCC-CACACTTACTGCATACAAAGGGCTTCTCCCCCGTGTGTGTCATCTGGTGTGAAATGAGGTGTGACTTCTGGGAGAAGGCCTTCCCACACTGGATGCACCCGTGAGG-CTTCTCTCCTGTATGGGTTCTCTGGTG-----GTTGATGAGACTTG i vicPac1.scaffold_179063 N 0 C 0 s bosTau4.chr17 29954655 211 - 76506943 GGTTTTTCACCTG-TATGAGTTCTCTGATGCCTGA-----------CAAGCTGGGA--------------------------------TTTCCTACTG--------------------------------------------AAAG-CCTTCC-CACACTTAGTGCATACAAAGGGTTTCTCTCCTGTGTGTGTCATCTGATGTGATAAGAGGTGAGATTTCTGGGAAAAGGCTTTCCCACACTGGATGCATCCATGAGG-CTTCTCTCCTGTATGGGTTCTCTGATG-----GTTAATAAGACTAG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3177784 211 + 42029645 ggtttttctcctg-tgtgagtcctctgatgtctaa-----------caagctgaga--------------------------------tttcctgctg--------------------------------------------aagg-ctttcc-cacatttactgcatacaaagggtttctctcctgtgtgagtcatctgatgggatatgagatgtgacttctgggagaaggctttcccacactgaatgcacacatgagg-cttctctcccgtgtgagttctctggtg-----gttgatgagactcg i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 71932 211 - 81011 ggcttttctcctg-tgtgagttctctgatgtctaa-----------caagctgaga--------------------------------tttcctgctg--------------------------------------------aagg-ctttcc-cacatttactgcatacaaagggtttctctcctgtgtgtgtcatctgatgggatatgagatgtgacttctgggagaaggctttcccacactgaatgcacccatgagg-cttctctcctgtatgagtcctctgatg-----gttaatgagactcg i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134064 211 - 94057673 GGCTTTTCTCCTG-TGTGAGTTCTCTGGTGTCTAA-----------CGAGCTGGGA--------------------------------TTTCCTGCTG--------------------------------------------AAGG-CCTTCC-CACATTTACTGCACACAAAGGGTTTCTCTCCCGTGTGTGTCATCTGATGCGATATAAGATGTGACTTTTGGGAAAAGGCTTTCCCACATTGAATGCATCCGTGAGG-TTTCTCTCCTGTGTGGGTTCTTTGATG-----GTTAATGAGACTTG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 321 212 + 15804 GTTTTTTCACCTG-TATGAGTTCTCTGATGCCTAA-----------TAAGCTGGGA--------------------------------TGTTCtgctg--------------------------------------------aagg-ccttcc-cacatttaTTACATACAAAGGGCTTCTCTCCTGTGTGTGTCATCTGATGTGATATGAGATGTGACTTCTGGGAAAAAGCTTTTCCACAATGAATGCATCCATGTGGTTTTTTCACCAATATGGGTTCTCTGATG-----GTTAATGAGACTTG i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9035 211 + 12755 GGCTTTTCTCCAG-TGTGAGTTCTCTGATGCCTAA-----------CGAGCTGGGA--------------------------------TTTCCTGCTG--------------------------------------------AAGG-CTTTCC-CACATTTACTGCATACAAAAGGTTTCTCTCCTGTGTGCGTCATATAATGCGATATAAGATGTGACTTCTGAGAGAAGGCTTTCCCACACTGAATGCATCCATGGGG-TTTCTCTCCTGTATGGGTTCTCTGATG-----ATTACTGAGACTCG i choHof1.scaffold_59997 C 0 C 0 s tetNig2.chrUn_random 51483104 211 - 107808587 AGTTTCTCCCCTG-TGTGACTCCTCATGTGTCGCG-----------TTAACCCATC--------------------------------ATTTCGGTAG--------------------------------------------AAAG-CTTTCC-CACATGTTGTACAGATGAATGGTTTCTCATCTGTGTGACTTCTCATGTGGAGAGTTAATTCACAATTTAGTGCAAagcctttcccacatgttttacacaaatatgg-tttctcacctgtgtgaacgcTCATGTG-CCTAATTAATGCAG---- i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102967924 211 - 400509343 ggcttctcacctg-tgtggacCCTCACATGTCTTG-----------ACAATGCATT--------------------------------gctttgtttg--------------------------------------------aagg-cttttc-cacatgtgGTGCAAATATAGGGCTTTTCACCTGTATGGATTCTCATGTGGTGTGACAAGTCAGTGCTTTGTGTAAAAGCTTTCCCACAGGTGTTGCAAACATACGG-TTTGTCACCTGTATGGATTCTCATGTG-TCGCGATAATTCAT---- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16771075 212 + 20083130 GGCTTCTCCCCGG-TATGGACTCTTGTATGAGCCT-----------TCAAATGT-G--------------------------------ATTTAGTAGG--------------------------------------------GAAT-GTTTTTCCACATGTGATGCAAGGATGTGGCTTCTCCCCAGTATGGCTTCCTATATGATACTTCAAATGTGAGGTAGTAGGGAATGTTTTCCCACAGGTGACGCAGGAATAAGG-ACTCTCCCCAGTATGAATTCTCATATGAGACTTCAAATTTGA---- i gasAcu1.chrXIII I 1690 C 0 s oryLat2.chr17 11089388 211 + 31848461 GGCCTTTcccctg-tgtgaattctcatgtggaTCT-----------TTAAGTCTCT--------------------------------ACTTTGCATG--------------------------------------------AAAC-CCTTTT-GACATagtttacaagtaaaaggcctTAAActtgtgtgagttctcatatgACAAGTAAAACTTCTCAAGGAGGCAAAAGCTTTCTTACAAATGTCACACGGAAAAGG-CTTCTCAGCTGTGTGAGTTTCTATGTG-GACTTTTAAGTCAC---- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784224 204 - 71658100 --TCTTTCTCCAG-TGTGAATCCTCTGGTGTCGTT-----------TTAATTCTGC--------------------------------AGCTGTAATA--------------------------------------------AAAG-TCTTCT-CACACTCCAAGCACATATAGTCTCTCACACCAGTGTGGATCTTCATGTGTCTTTTAAAGTATGATGATAGGCTGAAACTCTTCCCACACTGAGTGCATGTGAATGG-TTTCTCTCCAGTGTGGATCCTCATGTG------TTGATTAAG---- i danRer6.chr4 C 0 C 0 s xenTro2.scaffold_677 197718 291 + 553670 -------CTCCTG-TGTGAGTCCTTTGATGACGAGTAAATATAAATCGATCTGAGAAACATTTCCCACATTCAGAACAAGAAAATGGTTTTTCTGTCGTGTGAACTTGTCGTTGATGGACAGTAAGTTTTGATGAGCTGGCAAAAC-TCTTCT-GACATTCAGAACAAGAAAAAGGTTTCTCCCCTGTGTGAGTGCTTTGATGACGAGCAAGGTTAGAGCGATTTAAGAAACATTTCCCACACTCAGAACAAGAAAATGG-TTTCTCCCCTGTGTGGGTTCTGTGATG-----ACGAATAAGGTTAG i xenTro2.scaffold_677 I 175 I 6920 s petMar1.Contig2426 26750 211 - 37044 ggtttctctcctg-tgtgcgttctctgatGTATTT-----------TAAGATGgga--------------------------------tgactctgca--------------------------------------------aatg-ccttct-cacacacagtgcacttgaagggtttctctcctgtgtgtgttctctggtgactctgaagaactgatgactgtgcaaatgctttctcacacacagtgcacttgaaaag-tttctctcctgtgtgtgttctatggtg-----ttttttaagatttg i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=727241.000000 s hg19.chrUn_gl000223 48117 66 + 180455 ACCTCT-----CTCTAAATGCTTTCCTACACTCGCTGCATTCATAGGGTTTCTCTCCAGTATGAAT----TGTCT s otoGar1.scaffold_101698.1-26550 5476 66 + 26550 ACCTTT-----CTCTAAATGCCTTCCTACATTCACTGCACTCATAGGGATTCTCTCCAGTATGAAT----TGTCT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tarSyr1.scaffold_155717 5581 66 + 5780 ACCTCT-----CTCTAAACGCTTTCCCACATTCGCTGCATTCATAGGGCTTCTCTCCAGTATGAAT----TGTCT i tarSyr1.scaffold_155717 C 0 C 0 s rheMac2.chr11 185927 66 - 134511895 acctct-----ctctaaatgctttcctacactcgctgcattcatagggtttctctccagtatgaat----tgtct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 213134 66 - 136387465 ACCTCT-----CTCTAAATGCTTTCCTACACTCACTGCATTCATAGGGTTTCTCTCCAGTATGAAT----TGTCT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2168 66 + 8399 ACCTCT-----CTCTAAATGCTTTCCTACACTCGCTGCATTCATAGGGTTTCTCTCCAGTATGAAT----TGTCT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 175366 66 - 135371336 ACCTCT-----CTCTAAATGCTTTCCTACACTCGCTGCATTCATAGGGTTTCTCTCCAGTATGAAT----TGTCT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 213617 66 + 667635 ATCTCT-----CTCTGAAAGCTTTCCCACATTCCCTGCATTCATAAGGTTTCTCTCCAGTGTGAAT----TGTCT i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1919 39 + 3406 CCCTCT-----CTATAATTGCTTTACTATACTGGCTGC---------------------------C----TGTCT i dipOrd1.scaffold_79724 C 0 C 0 s vicPac1.scaffold_179063 230 66 + 1228 ACCTCT-----CTCTGAAGGCTTTCCCACACTCACTGCACTCATAGGGTTTCTCTCCGGTGTGAAT----TGTCT i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29954866 66 - 76506943 ACCTCT-----CTCTGAAGGCTTTCCCACATTCACTGCATTCATAGGGTTTCTCTCCAGTATGAAT----TGTTT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3177995 66 + 42029645 accgct-----ctctgaaggctttgccacattcactgcattcataaggcttctctccagtatgaat----ggtct i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72143 66 - 81011 acctct-----ctctgaatgctttacgacattcactgcattcatagggcttctctccagtatgaat----tgtct i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134275 66 - 94057673 ACCTCT-----CTCTGAAGGCTTTCCGACATTCACTGCATTCATAGGGCTTCTCTCCAGTGTGAAT----GGTCT i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 533 70 + 15804 ATCTCT-----cactgaaggccttcccacatccTCTGCATTCATAGGGATTCTCTCAAGTATGACTGAAATGTCT i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9246 66 + 12755 ATCTCT-----CTCTAAATGCTTTCCCACACTCACTGCATCCATACGGTTTCTCTCCAGTATGAAT----TGTCT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 204929 66 + 553670 ATCGAT-----ATGTAAAACATTTGCCACATTCAGAACAAGAAAATGGTTTCTCCCCTGTGTGAAT----TCTCT i xenTro2.scaffold_677 I 6920 C 0 s tetNig2.chrUn_random 51483315 66 - 107808587 AACCTT-----GACTGAaccctttcccacatgttttacacaaatatggtttctcacctgtgtgaac----tctca i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102968135 66 - 400509343 AGCTGC-----GTTTGAAAGCTTTCCTACATGTGGTGCAAACATATTGCTTCTCACCAGTGTGGAT----TCTTG i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16771287 65 + 20083130 TGCCTG------AGTAAATGTTTTCCCACAGGTGACGCAAGAAAATGGCTTCTCTCCACTGTGAAT----TCTCA i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11089599 66 + 31848461 TACCTG-----TTGtgaaactttttccacatactTCACAAGTGAAAGGCCTCtcacctgtgtgaat----tctca i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784428 71 - 71658100 GGATGATGAGTGCCTGAAACTTTTCCCACAACAAGTGCATGTGAATGGTTTCTCTCTATTGTGGAT----CATCA i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 26961 66 - 37044 atgact-----gtgcaaatgccttctcacacacagtgcacttgaaatgtttctctcctgtgtgtgt----tctat i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e tupBel1.scaffold_108613.1-130013 57455 0 + 130013 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=1727108.000000 s hg19.chrUn_gl000223 48183 153 + 180455 GATGTCTAATAAGCTCTGACTTCTCAAAGAATGCTTTTCTACAATCACTACATCCAAAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTTCTGTGATGT-------GTAACGA-GTTGTGACTTCCTGCTGAAGGCTTTCCCACATTCCCTGCATTCAAAAGG-CTTCTCAC s panTro2.chr12 175432 153 - 135371336 GATGTCTAATAAGCTCTGACTTCTCAAAGAAGGCTTTTCTACAATCACTACATCCAAAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTTCTGTGATGT-------GTAACGA-GTTGTGACTTCCTGCTGAAGGCTTTCCCACATTCCCTGCATTCAAAAGG-CTTCTCAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2234 153 + 8399 GATGTCTAATAAGCTCTGACTTCTCAAAGAAGGCTTTTCTACAATCACTACATCCAAAAGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTTCTGTGATGT-------GTAACGA-GTTGTGACTTCCTGCTGAAGGCTTTCCCACATTCCCTGCATTCAAAAGG-CTTCTCAC i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213200 153 - 136387465 GATGTCTAATAAGCTCTGACTTCTCAAAGAAGGCTTTTCGACAATCACTACATCCAAAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTTCTGTGATGT-------GTAACAA-GTTGTGACTTCCTGCTGAAGGCTTTCCCACATTCCCTGCATTCAAAAGG-CTTCTCGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 185993 153 - 134511895 gatgtctaataagctctgacttctcaaagaaagcttttctacaatcactacatccaaagggtttt-------------gttcct-----------------------------------------------------------------------gtgtgagttctgtgatgt-------gtaacga-gttgtgacttcctgctgaaggctttcccacactccctgcattcaaaagg-tttctcac i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_155717 5647 133 + 5780 GATGTCTAATGAGTTCTGACTTCTCAAAGAAGGCTTTTCTACAATCACTACATCCATAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTATGAGTCCTATGATGT-------GTTTCGA-GTTGTGACTTCCTGCTGAAGGCTT--CCACAATCCCTGC------------------- i tarSyr1.scaffold_155717 C 0 N 0 s otoGar1.scaffold_101698.1-26550 5542 153 + 26550 GATGTCTAATGAGCTCTGACTTCTCAAAGAAGGCTTTTCTACAATCATTACATCCATAGGGGTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTTCTGTGATGG-------GTAACAA-GCTGTGACTTCCTGCTGAAGGCTTTCCCACAATCTCTGCATTCAAAAGG-CTTCTCAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2102 153 - 57811 GATGTCTAATGAGCTCTGATTTCTCAAAAAAGGCTTTTCTACAATCACTACATCCATAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTATGAGTTCTGTGATGT-------GTAACAA-GTTGTGACTTCCTACTGAAGGCTTTTCCACACTCCCTGCACTCAAAAGG-TTTCTCTC i tupBel1.scaffold_103331.1-57811 I 1267 C 0 s cavPor3.scaffold_248 213683 153 + 667635 GATGCCTAATGAGTTCTGATTTCTCAAAGAAGGCTTTTCTGCAATCACTACATCCATAGGGCTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTCCTGTGATGT-------GTCACAA-GCTGTGACTTCCTGCTAAAGGCTCGCCCACATTCCCTGCATCCAAATGG-TTTCTCTC i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 1958 154 + 3406 GATGTCTAACGAGTTCTGATTTCTCAAAAAAGGATTTTCTACAGTCATTACATCTGTAGGATTTT-------------GTTCCT-----------------------------------------------------------------------GTATGGGCCCTGTGATGT-------GTAAAAATGTTTTGATTTCCTGCTGAAGGCTGTATCACATTCCCTGCAGTTGAAAGG-TCTCTTGC i dipOrd1.scaffold_79724 C 0 C 0 s vicPac1.scaffold_179063 296 153 + 1228 GATGTCTAATGAGCTCTGACTTCTCAAAGAAGGCTTTTCGACAGTCGCTACATCCGTAGGGTTTT-------------GTTCCC-----------------------------------------------------------------------GTGTGGGTCCTGTGATGT-------GTCACAA-GCTGTGACTTCCTGCTGAAGGCCTTCCCACACTCTCTGCACTCAAATGG-TTTCTCCC i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29954932 153 - 76506943 GATGTCTAATTAGCTCTGATTTCTCAAAGAAGGCTTTTCTACAATCGCTACATCCATAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGGGTCCTGTGATGT-------GTGACAA-GCTGTGACTTCCTGCTGAAGGCTTTTCCACATTCTCTGCATTCAAAAGG-TTTCTCTC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178061 153 + 42029645 gatgtctaatgagctcggacttctcaaagaaggcttttctacaatcactacatccatagggtttt-------------gtccct-----------------------------------------------------------------------gtatgagtcctatggtga-------gtaacaa-gttgcgacttcctgctgaaggctttcccacactctctacattcaaaagg-tttctctc i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72209 153 - 81011 gatgtctaatgagctctgatttctcaaagaaggcttttctacaatcactacacccatagggtttt-------------gttcct-----------------------------------------------------------------------gtgtgagtcctgtgatgt-------gtaacga-gttgtgatttcctgctgaaggccttcccacattctctgcattcaaaagg-tttctctc i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134341 153 - 94057673 GATGTCTAATGAGCTCCGACTTCTCAAAGAAGGCCTTTCTACAATCACTACATCCATAGGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGAGTCCTGTGATGG-------GTAACAA-GCTGTGACTTCCTGCTGAAGGCTTTCCCACATTCTCTGCACTCAAAAGG-TTTCTCTC i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 603 154 + 15804 GATGTATAAGGAGCTCTGATTTCTCAAAAATGACTTTTCTACAATCACTGCATCCATatagtttt-------------gtttct-----------------------------------------------------------------------ctgtgaCTCCTAAGATGT-------GTAACAA-GTTGTGACTTCCTGCTAAAAGCTTTCCCACAGTCCCTGCACTTAAAAGGCTTTTCCCC i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9312 153 + 12755 GATGTCTACTGAGCTCTGACTTCTCAAAGAAGGCTTTTCGACAATCACTACATCCATACGGTTTT-------------GTTCCT-----------------------------------------------------------------------GTGTGTGTCCTATGGTGT-------GTAATGA-GTTGTGACTTCCTGCTGAAAGCTTTCCCACATTCCCTACATTCAAAAGG-TTTCTCTC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 204995 153 + 553670 GATGATGAGCACGGCGAGATTGGCTAGAAAAACATTTCCCACATTCAGGACAAGAGAATGGTTTC-------------TCCCCT-----------------------------------------------------------------------GTGTGAGTCCTTTGATGA-------CGAACAA-GGTAAGAGCGATTTAAGAAACATTTCCCACATTCAGAACAAGAAAATGG-TTTCTCTC i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483381 153 - 107808587 tgtgcaGAGCTAAAGCAGGGTGATGGCTGAATGATTTCCCACATGCTTTACAGATGTACGGTTTC-------------TCACCG-----------------------------------------------------------------------GTGTGACTTCTCATGTGC-------ACATTTA-AAGCACCGTTCCTGGAGAAagctttcccacatgttttacatttgtatGG-TTTCTCGC i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102968201 150 - 400509343 TGTGTCGCGATAActcctcattttctttgaaagCTTTTCCGCATGTTGCACAACTAAATGGTTTC----------------CCC-----------------------------------------------------------------------GTGTGGACTTTCAGGTGCCTCTGCAGTTTTGA-CAGGAACTT-------AAAGTCTTTTCCACAATCAAAACACTTGAAAGA-ATTTGTAC i fr2.chrUn C 0 I 2280 s gasAcu1.chrXIII 16771352 153 + 20083130 TATGAGACTTCAAATTTGATGCCTGATTGAATGTTTTCCCACAGGTGATGCAAGAAAACGGCCTT-------------TCCCCA-----------------------------------------------------------------------GAGTGAATTTTGATGTGT-------ATTTTTA-AGCCATTACTACACTTAAAGTATTTCCCACAAGTTTGGCAAGAAAATGG-TTTCTCAT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11089665 237 + 31848461 tgtgaacATTTAAGGAAGACTtataagaaaactgtttttcacaGACTTCACAAGAATAAGGCCTTTCGCCTGTGTGAGTCCCCATATGGGCCTTTAAGGCACTGCTTTGCCTGAAACCCTTTTGACACAGTTTACAAGTAAGATGcctttcacctgtgtgagttctcatgtgg-------aTTTTTA-AGTCACTACttttaatcaaactttttccacatactTTACAAGTGAAAGG-CCTCtcac i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784499 153 - 71658100 TGTGTTGATTAAGGTGTGATGAGTGCCTGAAACTTTTCCCACACTGAGTGCATGTGAATGGTTTC-------------TCTCCA-----------------------------------------------------------------------GTGTGGATCCTCATGTGT-------TTATTTA-GGTATGAGGATAGGCTGAAACTCTTCCCACACTGAGTGCATGTGAATGG-ACTCTCTC i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27027 153 - 37044 ggtgttttttaagatttgatgactgtgcgAATGCCTtcttacacacactgcacttgaagggtttt-------------tctcct-----------------------------------------------------------------------gtgtgtgttctttggtgT-------TTTTCAA-GATCtgatgaccatgcaaatgccttctcacagacagtgcacttgaaagg-tttctctc i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=725067.000000 s hg19.chrUn_gl000223 48336 65 + 180455 CGGTATGAATTCTCTGATGGTTAATGAGATTGGACTTTTCACTAAAGGCCCTCCCACATTCATTG s panTro2.chr12 175585 65 - 135371336 CAGTATGAATTCTCTGATGGTTAATGAGATTGGACTTTTCACTAAAGGCCCTCCCACATTCATTG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2387 65 + 8399 CGGTATGAATTCTCTGATGGTTAATGAGATTGGACTTTTCACTAAAGGCCCTCCCACATTCATTN i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213353 65 - 136387465 CAGTATGAATTCTCTGATGGTTAATGAGATTGGACTTTTCACTAAAGGCCCTCCCACATTCATTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186146 65 - 134511895 cggtatgaattctctgatggttaatgagattggacttttcactaaaggccctcccacattcactg i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 5695 65 + 26550 CTGTATGAATTCTCTGATGATTAATGAGATTTGACTTTTCACTAAAGGCCCTCCCACACTCATTG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2255 65 - 57811 CTGTATGAATTCTCTGATGATTAATAAGATTTGATTTTTCACTAAAGGCTCTCCCACATTCACTG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 213836 65 + 667635 CTGTATGAATTCTCTGATGATTAATGAGATTTGACTTTTCACTGAAGGCTCTCCCACAATCACTG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 2112 65 + 3406 CTATGGGAATTCTCTGGTGGTTTATGAGATTTGACTTTTCACTGAAGGCCTTCCCACATTCATTG i dipOrd1.scaffold_79724 C 0 C 0 s vicPac1.scaffold_179063 449 65 + 1228 CCGTGTGAATCCTCTGGTGGTTGATGAGATTTGACTTCTCACTGAAGGCCCTCCCACACTCACTG i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29955085 65 - 76506943 CTGTATGAATCCTTTGATGATTGATGAGATTTGACTTTTCACTAAAGGCCCTCCCACATTCAGTG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178214 65 + 42029645 ctgtatgaattctctgatgattaataagatttgacttctcactaaaggcccttccacattcattg i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72362 65 - 81011 ctgtatgaattctctgatgattaataagatttgacttctcactaaaggcccttccacattcgttg i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134494 65 - 94057673 CTGTGTGAATTCTCTGATGATTAATGAGATTTGACTTTTCACTAAAGGCCCTCCCACATTCACTG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 757 65 + 15804 CTATATGAATTCTCTGATGATTAATAAAATTTGACTCTTCACTAAAGGCCCTTCCACATTCGTTG i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9465 65 + 12755 CTGTATGAATTCTCTGATGATTAATAAGATTTGACTTTTCACTGAAGGCTCTTCCACAATCACTG i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205148 65 + 553670 CTGTGTGGGTTATTTGGTGGTCTTTAAGGTCAGATTGCCTTGAAAAACATTTCCCACATTCAGAA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483534 65 - 107808587 CTGTGTGAACTCTAATGTGCTTAGTTAATATATCATTACTGGAAAAcgatttcccacatgtttta i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102970631 64 - 400509343 CTGTATT-ATTTTCATGTGGTGTGATAAATTCCTTTTAGAACGAAAAGAAATTTCACATATTTgg i fr2.chrUn I 2280 C 0 s gasAcu1.chrXIII 16771505 65 + 20083130 CACTGTGGACTCTTTTATGAATCTCAAATGATGATTTATGAGTGAATGTTTTCCCACAGGTGTTG i gasAcu1.chrXIII C 0 I 14391 s oryLat2.chr17 11089902 65 + 31848461 ctgtgtgaattctcatgtgaacATTTAAACAAGAAGTTTGAGTAAAACGTTTTAGACAGacttta i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784652 65 - 71658100 CAGTGTGGATCCTCATGTGTCGATTAAGGGATGCTGATTGGCTGAAACTCTTCCCACACTGAGTG i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27180 65 - 37044 ctgtgtgcgttctctggtgttctttaagatgtgatgacactGCAAAGggcttcccgcacagagtg i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=747198.000000 s hg19.chrUn_gl000223 48401 66 + 180455 CATCCATAGGGTTTCTCTCCTGTGTGTGTTCTCCAATGCGATATGAGATGTGACTTCCGGGAGAAG s panTro2.chr12 175650 66 - 135371336 CATCCATAGGGTTTCTCTCCTGTGTGTGTTCTCCAATGCGATATGAGATGTGACTTCCGGGAGAAG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2452 66 + 8399 CATCCATAGGGTTTCTCTCCTGTGTGTGTTCTCCAATGCGATATGAGATGTGACTTCCGGGAGAAG i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213418 66 - 136387465 CATCCATAGGGTTTCTCTCCTGTGTGTGTTCTCCAATGCGATATGAGATGTGACTTCCGGGAGAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186211 66 - 134511895 catccatagggtttctctcctgtgtgtgttctccaatgcgatatgagatgtgacttccgggagaag i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 5760 66 + 26550 CATCCATAGGGCTTTTCTCCTGTGTGAGTCCTCCAATGTGATATGAGATGTGACTTCCGGGAGAAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2320 66 - 57811 CATCCATAGGGTTTTTCTCCTGTGTGTGTCCTCCAATGTGATATGAGATGTGACTTTCGGGAAAAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 213901 66 + 667635 CATCCATAAGGCTTCTCTCCAGTGTGTGTCCTCCAATGTGATATGAGATGTGACTTCCGGGAAAAT i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 2177 62 + 3406 CATCCACAGGGCCTTTCTTCTATGTGTGTCCTCCAATGAGATTTACGATGTGATTTCTG----AAA i dipOrd1.scaffold_79724 C 0 C 0 s vicPac1.scaffold_179063 514 66 + 1228 CACCCATAGGGTTTCTCCCCTGTGTGTGTCCTCCAGTGTGAGATGAGGTGAGACTTCCGGGAGAAG i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29955150 66 - 76506943 CATCCATAGGGCTTCTCTCCTGTGTGTGTCCTCCAATGTGATATGAGATGTGACTTCCGGGAGAAG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178279 66 + 42029645 cacccatagggtttttcacctgtgtgtgtcctccaatgtgatatgagatgtgacttccgggagaag i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72427 66 - 81011 cacccgtagggtttctcacctgtgtgtgtcctccagtgtgatatgagatgggacttccgggagaag i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134559 66 - 94057673 CACTCATAGGGTTTTTCTCCTGTGTGAGTCCTCCAATGTGATATAAGATGGGATTTCCGGGAGAAG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 822 66 + 15804 CATCTATAAGGTTTTGCTCCGGTATGTGTCCTCCAATGTGATATGAGATGTGACTTCCAGGGAAAg i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9530 66 + 12755 CACTCATAAGGTTTTTCTCCTGTGTGTGTCCTCCAATGTGATATAAGATGTGATTTCCGGGAAAAG i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205213 66 + 553670 CAGGAAAAAGGTTTCTCCCCTGTGTGGGTTCTATAATGCATTTTAAGTTGTAATTTAGTTGACAAA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483599 66 - 107808587 cagaCGTACGGCCTTTCGCCTGTATGACTTCTCATGTGGATGGTTAATGCAGAGTTATGTTTGAAa i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102970695 64 - 400509343 cata--tacagtattttttcAGTGTGAACTTTAAAGTGCACTGACAAGTTAGGTCCTTTGTAGAAA i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16785961 66 + 20083130 CAGGAATATGGTTTCTCCCCAGTATGGACTCTTGTATGAGACCTCAATTGTGATATCCGAAGGAAT i gasAcu1.chrXIII I 14391 C 0 s oryLat2.chr17 11089967 66 + 31848461 caagaataaggcctttcgcctgtgtgagttctcatgtgacaGGTCAAATTTCTTAAGGAGACGAAG i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784717 66 - 71658100 CATGTGAATGGTTTTTCTCTGGTGTGGATCCTCATGTGTTCATTAAGGTGTGATGAGTGGATGAAA i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27245 66 - 37044 cacctgaagggtttctctcctgtgtgtgttctctggtgtcttttaagggcggatgaatctgaaaat i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=2051049.000000 s hg19.chrUn_gl000223 48467 165 + 180455 GCTTTCCCACATTCACCACACTCATAAGGTTTCTCTCCTGTATGTGTCCGCTGATG-GGATGTGAGCT----GTGACTTTTGGGAGAAGGCTTTCCCACACTGGCTACAATTATAAGGTTTTTCTCCTGTATGAGTTCTGTGATGTGT-----AATAAACTGAGACT---TCTGG---GGA s panTro2.chr12 175716 165 - 135371336 GCTTTCCCACATTCGCCACACTCATATGGTTTCTCTCCTGTATGTGTCCGCTGATG-GGATGTGAGCT----GTGACTTTTGGGAGAAGGCTTTCCCACACTGGCTACAATTATAAGGTTTTTCTCCTGTATGAGTTCTGTGATGTGT-----AATAAACTGAGACT---TCTGG---GGA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2518 165 + 8399 GCTTTCCCACATTCGCCACACTCATATGGTTTCTCTCCTGTATGTGTCCGCTGATG-GGATGTGAGCT----GTGACTTTTGGGAGAAGGCTTTCCCACACTGGCTACAATTATAAGGTTTTTCTCCTGTATGAGTTCTGTGATGTGT-----AATAAACTGAGACT---TCTGG---GGA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213484 165 - 136387465 GCTTTCCCACATTCGCCACACTCATATGGTTTCTCTCCTGTATGTGTCCGCTGATG-GGATGTGAGCT----GTGACTTTTGGGAAAAGGCTTTCCCACACTGGCTACAATTATAAGGTTTTTCTCCTGTATGAGTTCTGTGATGTGT-----AATAAACTGAGACT---TCTGG---GGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186277 165 - 134511895 gctttcccacattcgccacactcatagggtttctctcctgtatgtgtccgctgatg-ggatgtgagct----gtgacttttgggagaaggctttaccacactggctacaattataaggtttttctcctgtatgagttctgtgatgTGT-----AATAAACTGAGACT---TCTGG---GGA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 5826 165 + 26550 GCTTTCCCACATTCACCACATTCATATGGTTTCTCTCCAGTATGTGTTCTCTGATG-AGATGTGAGCT----GTGATTTCTGGGAGAAGGCTTTCCCACACTGGCTACAATTATAAGGTTTCTCTCCTGTATGAGTTCTATGATGGGT-----AATAAACTGTGACT---TCTGA---GGA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2386 165 - 57811 GCTTTTCCACATTCACCACATTCATATGGTTTTTCTCCTGTATGTGTCCTCTGATG-GGATGTGAGTT----GTGACTTCTGGGAGAAAGCTTTCCCACACTGGCTACAATCATATGGTTTTTCTCCTGTGTGAGTTCTGTGATGTGT-----CATAAACTGTGACT---TCTGG---GGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2239 142 + 3406 GCTTTCCCACACTTACCACATTCATATGGTTTCTCTATGGTATATGTACTCTGATGAGAATATGAGCT----GTGATTT----------------------TGGCTACAGTCATAAGGTTTCTCTCC--TATGAGTTCTGTGATGTGT-----GATAAATTCTGACT---CTGGG---GAA i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 213967 165 + 667635 GCTTTACCACACTTACCACACTCATAGGGCTTCTCTCCTGTGTGTGTCCTCTGATG-GGATGTGAGCT----GTGACTTTTGAGAGAAGGCTTTCCCACACTGGCCACAGTCATAAGGTTTCTCTCCGGTATGAGTTCTGTGGTGTGT-----GATGAATTGTGACT---TTTGG---GGA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 0 165 - 11041 GCTTTCCCGCATTTGCCACACTCATATGGCTTCTCTCCTGTATGTGTCCTCTGATG-GGACGTAAGCT----GTGACTTTTGGGAGAAAGCTTTCCCACACTGGCTACAATCATAAGGTTTTTCTCCAGTATGAATTCTGTGATGTGT-----AACAAACTGTGCCT---TCTGG---GGA i speTri1.scaffold_84809 N 0 C 0 s vicPac1.scaffold_179063 580 165 + 1228 GCCTTCCCACACTCGCCACACTCGTATGGCTTTTCCCCTGTGTGTGTCCTCTGATG-GGAGGTGAGCT----GTGACTTCTGGGAGAAGGCTTTCCCACACTGGCTGCAGTTGTAAGGTTTCTCTCCCGTGTGAGTTCTGTGATGTGT-----AATGAACTGTGACT---TCTGG---GGA i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29955216 165 - 76506943 GCTTTCCCACACTCACCACATTCATATGGTTTCTCTCCTGTATGTGTCCTCTGATG-GGATGTCAGCT----GTGACTTTTGGGAGAAGGCTTTCCCACACTGGCTACAATTGTAAGGTTTCTCTCCCGTATGAGTTCTATGATGTGT-----AATAAACTGTGACT---TCTGG---GGG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178345 165 + 42029645 gctttcccacattcaccacattcatatggtttctctcctgtgtgtgttctctgatg-tgatgtgagct----gtgacttctgggagaaggctttcccacactggccacaatcataaggtttctctcctgtatgagttctgtgatgtgt-----aataaactgtgact---tctgg---gga i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72493 165 - 81011 gctttcccgcattcaccacattcatatggtttctctcctgtgtgtgtcctctgatg-ggatgtgagct----gtgacttttgggagaaggctttcccacactggctacaattgtaaggtttctctcctgtgtgagtcctgtgatgtgt-----aacaaactgtgact---tctgg---gga i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134625 165 - 94057673 GCTTTCCCACACTCACCACATTCGTATGGTTTCTCTCCTGTGTGTGTCCTCTGATG-GGATGTGAGCT----GTGACTTCTGGGAGAAGGCCTTCCCACACTGGCCACAATCATAAGGCTTCTCTCCTGTATGAGTTCTGTGATGTGT-----AATAAACTGCGACT---TCTGG---GGA i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 888 165 + 15804 atttccccacatccacgactTTCATGTGGTTTCTTTCCTGTGTATGTTCTGTTATG-TGATGTGAGCT----GTGACTTCTGGGAGAAAGCTCTTTCACACTGGAAACAATCATAAGGTTTATCCCCTGCATGAGTTCTGTGATGTGC-----AATAAACTATGACT---TCTGG---GGA i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9596 165 + 12755 GCTTTCCCACATTCACCACATTCATAGGGTTTCTCTCCTGTATGTGTCCTCTTATG-GGATGTAAGCT----GTGACTTTTGGGAGAAGGCTTTACCACATTGGCTACAGTCATAGGGTTTCTCTCCTGTATGAGTTCTATGATGTGT-----AATAAACTGTGACT---TCTGG---GGA i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205279 165 + 553670 CATTTCCCACATTCAGAACAAGGGAATGGTTTCTCCCCTGTGTGAGTCCTTTGATG-ACGAGCAAGGTTAAAGCGATTT----AAGAAACATTTCCCACATTCAGAACAAGAAAAAGGTTTCTCCCCTGTGTGAGTTCTTTGGTGAGA-----AGCAAGGTTAGATT---GCTTT---GAA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483665 165 - 107808587 gctttcccacatgttttgcACACATAGGGTTTCTCAGttgtgtgaactctcatgtg-ccTGGTTAACG----TAGAACTTTGACCAAAacttttcccacatgttttacacaaatacgGTTTCTCCCCTGTGTGACTCCTCATGTGCTTAGTTAATTCAGAG--GTCT---GATAA------ i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102970759 160 - 400509343 GCTTTTCCACATTTCTCACAATCATATGGCTTCACACCTGTTTGATTTTTCATATG-ACATGATAAAG----TTCCTTTCAGTCTAAAATCTATTCCGCACATTGTGCAAACATATGCTTGTTCTCCTGTGTAAACTGTAATGTATCT-----CTTCAGAC--GAAC---ACTTA------ i fr2.chrUn C 0 I 5 s gasAcu1.chrXIII 16786027 165 + 20083130 GTTTTCCCACAGGCGATGCAGGAATATGGCTTCTCCACAGAATGGACTCTTGTATG-AGACCTCAATT----GTGATATCCGAAGGAATGTTTTCCCACAGGTGATGCAGGAATATGGCTGCTCCCCAGTATGGATTCTTGTATGATA-----CTTCAAATGTGATTTGGTATGA------ i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11090033 165 + 31848461 ACTTTCTTACAAATATCACACGAAAAAAGCTTCTCACCTGTGTGACTTCTTGTGTG-GGCTTTTAATT----TAGACCTTTGAGAAAAAATTTTTCCACATACTTCACAAGTGAAAGGCGTCTCACccgtgtgaattctcatgtggaC-----ATTTAAGGAAGACT---TATGAGTA--- i oryLat2.chr17 C 0 I 168 s danRer6.chr4 43784783 165 - 71658100 TTCTTCCCACACTGAGTGCAAGTGAATGGTTTTTCTCCAGTGTGGATCCTCATGTG-TAGATTAAGGT----TTGATGGTTGGTTGAAACTCTTCCCACACTGAGTGCATGTGAATGGTTGTTCTCCGGTGTGGATCCTCATGTGTCTGTAAAGCGTAGAT--GATT---TGCTG------ i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27311 165 - 37044 gccttcccacacacactacagctgaagggtttctcccctgtgtgtgttctctggtg-ttttttaagaa----caGATGAATCTGAatatgccttcccacacacactacacctgaagggtttctctccagtGTGTGTTCTCCGGTGTTT-----TTGAAGAACtgatg---accat---gca i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=396116.000000 s hg19.chrUn_gl000223 48632 37 + 180455 AAGGTTTTGCCACAATTACCACAGCCAA---AGGCTATGT s panTro2.chr12 175881 37 - 135371336 AAGGTTTTGCCACAATTACCACAGCCAA---AGGCTATGT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2683 37 + 8399 AAGGTTTTGCCACAATTACCACAGCCAA---AGGCTATGT i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213649 37 - 136387465 AAGGTTTTGCCACAATTACCACAGCCAA---AGGCTATGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186442 37 - 134511895 AAGGTTTTGCCACAATTACCACAGCCAA---AGGCTATGT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 5991 37 + 26550 AAGGTTTTGCCAAATTTACCACAGCCAT---AGGCTATTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2551 37 - 57811 AAGGTTTTCCCACAGTTACCACAGCCAT---AAGCTATTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2381 30 + 3406 AAAGTTCTGCCACATTT---ACAACCAT---AAGCT---- i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 214132 37 + 667635 AAGGTTTTCCCACATTTACCACAGCCAT---AAGCTATTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 165 37 - 11041 AAGGTTTTGCCACATTTACCACAGCCAT---AGGCTATCT i speTri1.scaffold_84809 C 0 C 0 s vicPac1.scaffold_179063 745 37 + 1228 AAGGTCTTGCCGCATTTACCACAGCCAT---AGGCTATCT i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29955381 37 - 76506943 AAAGTCTTGCCACATTTACCACAGCCAT---AGGCTATTT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178510 37 + 42029645 aaggttttgccacacttcccacagccat---aggctatct i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72658 37 - 81011 aaggttttgccacacttaccacagccat---aggctatct i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134790 37 - 94057673 AAGGTTTTGCCACATTTCCCACAGCCAT---AGGCTATCT i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 1053 37 + 15804 AAGGTTTTTCCACACTTAACACAGGCAT---AGGCTATCT i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9761 37 + 12755 AATGTTTTGCCACAGTTACCACAGCCAA---AGGCTATTT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205444 37 + 553670 AAACATTTCCCACATTCAGAACAAGAAA---ATGGTTTCT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483830 28 - 107808587 AATGATTTCCCACATGTTTGACAGCTAA------------ i tetNig2.chrUn_random C 0 I 10452 s fr2.chrUn 102970924 31 - 400509343 AAAGCCATCCCACATGTTGTGCACACATGGT--------- i fr2.chrUn I 5 I 2 s gasAcu1.chrXIII 16786192 37 + 20083130 AATGTTTTCCCACAAGTGTTGCAGGAAT---ATGGCTTCT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11090366 37 + 31848461 AAGGCTTTCTTACAAATCTCACAGGAAT---AAGGCCTCt i oryLat2.chr17 I 168 C 0 s danRer6.chr4 43784948 37 - 71658100 AACCTCTTCCCACACTGGTGGCATGTGA---ATGGTTTCT i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27476 37 - 37044 aatgccttctcacacacagtgcacttga---agggtttct i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=344899.000000 s hg19.chrUn_gl000223 48669 43 + 180455 CTCTTATATGTCTGCTCTGATGTTTAATGAG-ACTTGG-TTT--------CTT s panTro2.chr12 175918 43 - 135371336 CTCTTATATGTCTGCTCTGATGTTTAATGAG-ACTTGG-TTT--------CTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2720 43 + 8399 CTCTTATATGTCTGCTCTGATGTTTAATGAG-ACTTGG-TTT--------CTT i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213686 43 - 136387465 CTCTTATATGTCTGCTCTGATGTTTAATGAG-ACTTGG-TTT--------CTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186479 43 - 134511895 CTCTTATATGTCTGCTTTGATGTTTAATGAG-ACTTGG-TTT--------CTT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6028 43 + 26550 CCCTTATATGTCTGCTCTGATGTTTAGTGAG-ACTTGA-GTT--------CAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2588 43 - 57811 CTCTTAGATGTCTGCTCTGATGTTTAATGAG-ACTTGT-CTT--------CCT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2411 36 + 3406 -TCTTCTATGTCTGCTCTGATGTTTAAGGAGAGTTTG---------------- i dipOrd1.scaffold_79724 C 0 I 10 s cavPor3.scaffold_248 214169 43 + 667635 CTCTTATGTGTCTGCTTTGATGTTTAATGAG-GCTTGA-TTT--------CTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 202 43 - 11041 CCCTTATGTGTCTGCTCTGATGTTTAATGAG-ACTGGA-TTT--------TTT i speTri1.scaffold_84809 C 0 C 0 s vicPac1.scaffold_179063 782 43 + 1228 CTCTCACATGTCTGCTCTGGTGTTTAATGAG-ACTGGA-TTT--------CTT i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29955418 43 - 76506943 CTCTTATATGTCTGCTCTGATGTTTAATGAG-ACTTGA-TTT--------CTT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178547 43 + 42029645 ctcttatatgtctgctctgatgtttaatgag-actgga-ttt--------ctt i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72695 43 - 81011 cccttatgtgtctggtctgatgtttaatgag-acttga-tct--------ctt i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134827 43 - 94057673 CTCTTACATGTCTGCTCTGATGTTTAATGAG-ACTAGA-TTT--------CTT i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 1090 44 + 15804 CTCTTATATGTCTGCTCTGATGTTTAATGAG-ACTTAAGTCT--------TTT i sorAra1.scaffold_196587 C 0 C 0 s choHof1.scaffold_59997 9798 43 + 12755 CTCTTACATGCCTACTTTGATGTTTCATGAG-ACTTGA-TTT--------CTT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205481 43 + 553670 CTCCTGTGTGGGTTACTTGATGGCCTTTAAG-CTCATA-TTT--------GTT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51494310 43 - 107808587 CGCCTGTGTGATTTCTCATGTGGACTTTTAA-TGCAGA-ACT--------TGT i tetNig2.chrUn_random I 10452 C 0 s fr2.chrUn 102970957 46 - 400509343 CTCACCTGTGAATTCTCAAATGA-----CAT-GACAAA-gttcctttttgtct i fr2.chrUn I 2 C 0 s gasAcu1.chrXIII 16786229 43 + 20083130 CCCCAGTATGGATTTTTATATGAGAGTTCAA-AGAAGA-TAT--------GTG i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11090403 43 + 31848461 cacctgtgtgaattctcatgtgaaTATTTAA-GTaaga-act--------ttg i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43784985 43 - 71658100 CTCCAGTGTGGATCATCATGTGTTGATTAAG-GTTTGC-TAA--------GTG i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27513 35 - 37044 ctcctgtttgagttctctggtgccgcGTCAC-ACTT----------------- i petMar1.Contig2426 C 0 T 592 e dasNov2.scaffold_7587 19225 2397 + 154172 M e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I a score=689169.000000 s hg19.chrUn_gl000223 48712 64 + 180455 ACTG--AAGCGCTTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCTAAACGATTTCTATGATAT s danRer6.chr4 43785028 60 - 71658100 GCAG--AAACTCTTCCCACA-CTGAGTGCATGTGAATGGTTTC-T-CTCCAGTGTGGATCCT----CAT i danRer6.chr4 C 0 C 0 s oryLat2.chr17 11090446 60 + 31848461 aaaa--aaacatttttgaca-aactttacaagaataaggcttt-t-cgcctgtgtgagttct----cat i oryLat2.chr17 C 0 C 0 s gasAcu1.chrXIII 16786272 60 + 20083130 AGTG--AATGTTTTCCCACA-GGTGGTGCATGAATATGGCTTC-T-CCCCAGTATGAATTCT----TAT i gasAcu1.chrXIII C 0 C 0 s fr2.chrUn 102971003 60 - 400509343 tttg--aaaGCTTTACCACA-AATTGTGCAAACATTGGGCTTC-T-CGCCTTAGTGAATTCT----TAA i fr2.chrUn C 0 C 0 s tetNig2.chrUn_random 51494353 57 - 107808587 TTTG--AACCCTTTctcaca-tgttttacacaaatagggtttc-t-cacctgtgtgaactct------- i tetNig2.chrUn_random C 0 T 10552 s xenTro2.scaffold_677 205524 64 + 553670 --TGAAAAACATTTCCCACA-TTCAGAACAAGAGAATGGTTTC-T-CCCCTGTATGTGTCCTTTGATGA i xenTro2.scaffold_677 C 0 C 0 s choHof1.scaffold_59997 9841 64 + 12755 GTTG--AAGCGTTTCCTACA-TTCACTGCATTCATACAGTTTC-T-CCCCTAAACGGGTTCTGTGATAT i choHof1.scaffold_59997 C 0 C 0 s sorAra1.scaffold_196587 1134 64 + 15804 ACTG--AAGCACTTTCTACA-TTCACTGCATTCATATACTTTC-T-CCCCTAATTGGGTTTTGTGCAAT i sorAra1.scaffold_196587 C 0 C 0 s equCab2.chr8 64134870 64 - 94057673 AGTG--AAGCGCTTCCTACA-TTCACTGCACTCATAGAGCTTC-T-CCCCTAAACGAGTTCTGTGATAT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 72738 66 - 81011 agtg--aagcgtttcctacatttcactgcattcatagagtttctt-cccctagacgagttctgtggaat i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3178590 64 + 42029645 agtg--aagcgtttcctaca-ttcactgcattcatagagtttc-t-cccctaaacgagttctgtgatat i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29955461 64 - 76506943 ACTG--AAGCGTTTCCTACA-TTCACTGCATTCATAGAGCTTC-T-CCCCTGAACGACTTCTGTGATAT i bosTau4.chr17 C 0 C 0 s vicPac1.scaffold_179063 825 64 + 1228 ACTG--AAGCGTTTCCTACA-TTCGCTGCATTCATAGAGCTTC-T-CTCCTAAACGATTTCTATGATAA i vicPac1.scaffold_179063 C 0 C 0 s speTri1.scaffold_84809 245 64 - 11041 ATTG--AAGCGTCTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CTCCTAACCGAGTTCTGTGGAAA i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 214212 64 + 667635 GCTG--AAACGTTTTCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCTAGACGAGTTCGGTGATAA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2631 64 - 57811 ACTG--AAGCGTTTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCAAAACGAGTCCTGTGATAT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6071 65 + 26550 ACTG--AAGCGTTTTCTACA-TTCACTGCATTCAAAGAGTTTC-TCCCCCTAAACGAGTTCTGTGATAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 186522 64 - 134511895 ACTG--AAGCGCTTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCTAAACGATTTTTATGATAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 213729 64 - 136387465 ACTG--AAGCGCTTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCTAAACGATTTCTATGATAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2763 64 + 8399 ACTG--AAGCGCTTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCTAAACGATTTCTATGATAT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 175961 64 - 135371336 ACTG--AAGCGCTTCCTACA-TTCACTGCATTCATAGAGTTTC-T-CCCCTAAACGATTTCTATGATAT i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e dipOrd1.scaffold_79724 2447 10 + 3406 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e loxAfr3.scaffold_113 94995 1629 - 3408981 I e petMar1.Contig2426 27548 592 - 37044 T a score=34886.000000 s hg19.chrUn_gl000223 48776 9 + 180455 ATGA-------------TAATC s panTro2.chr12 176025 9 - 135371336 ATGA-------------TAATC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2827 9 + 8399 ATGA-------------TAATC i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213793 9 - 136387465 ATGA-------------TAATC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186586 9 - 134511895 ATGA-------------TAATC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6136 9 + 26550 ATGA-------------TAATC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2695 9 - 57811 ATGA-------------CAATC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214276 9 + 667635 ATGA-------------CAATC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 309 9 - 11041 ATGA-------------CAATC i speTri1.scaffold_84809 C 0 C 0 s vicPac1.scaffold_179063 889 9 + 1228 ATGA-------------TACTC i vicPac1.scaffold_179063 C 0 C 0 s bosTau4.chr17 29955525 9 - 76506943 ATGA-------------TGATC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178654 9 + 42029645 atga-------------taatc i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72804 9 - 81011 atga-------------taatc i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134934 9 - 94057673 ATGA-------------TAATC i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 1198 9 + 15804 ATAA-------------TAAGT i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96624 9 - 3408981 ATGA-------------TAATC i loxAfr3.scaffold_113 I 1629 C 0 s choHof1.scaffold_59997 9905 9 + 12755 ATAA-------------CAATC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205588 9 + 553670 CGAG-------------CAAGG i xenTro2.scaffold_677 C 0 C 0 s fr2.chrUn 102971063 4 - 400509343 GTGT------------------ i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16786332 4 + 20083130 ATGA------------------ i gasAcu1.chrXIII C 0 I 2541 s oryLat2.chr17 11090506 14 + 31848461 gtgaccGGTCAATG-------- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43785088 7 - 71658100 GTGA----------ATC----- i danRer6.chr4 C 0 C 0 s petMar1.Contig43357 4917 9 - 11193 CTGA-------------AGAAC i petMar1.Contig43357 I 1486 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e dipOrd1.scaffold_79724 2447 10 + 3406 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e tetNig2.chrUn_random 51494410 10552 - 107808587 T a score=69937.000000 s hg19.chrUn_gl000223 48785 21 + 180455 TG-TGACT-TTTTAT-AGCTCTCT-- s panTro2.chr12 176034 21 - 135371336 TG-TGACT-TTTTAT-AGCTCTCT-- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2836 21 + 8399 TG-TGACT-TTTTAT-AGCTCTCT-- i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213802 21 - 136387465 TG-TGACT-TTTTAT-AGCTCTCT-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186595 21 - 134511895 TG-TGACT-TTTTAT-AGCTCTCT-- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6145 20 + 26550 TG-TGAC--TTTTAT-AGGGGTCT-- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2704 21 - 57811 TG-TGACT-TTTTAT-AGATATCT-- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214285 21 + 667635 TG-GGATT-TCTTAT-AGTTAATA-- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 318 21 - 11041 TG-TGACT-TTTTAT-AGCTATTG-- i speTri1.scaffold_84809 C 0 C 0 s vicPac1.scaffold_179063 898 21 + 1228 TG-TGACT-TCCTAT-CACTAGCT-- i vicPac1.scaffold_179063 C 0 N 0 s bosTau4.chr17 29955534 20 - 76506943 TG-TGACT-TCTTAT-AGCTAAC--- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178663 21 + 42029645 tg-tgact-tcttag-agttaatt-- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72813 20 - 81011 tg-tgact-tcttag-aact-att-- i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64134943 21 - 94057673 TG-TGACT-TCTTAC-AGCTAGCT-- i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 1207 22 + 15804 Tg-cgatt-ttttttaaactagct-- i sorAra1.scaffold_196587 C 0 I 3 s loxAfr3.scaffold_113 96633 21 - 3408981 TG-TGACT-TCTTGT-AGCTAATC-- i loxAfr3.scaffold_113 C 0 I 3 s choHof1.scaffold_59997 9914 21 + 12755 TG-TGACT-TCTTGT-AGATAACT-- i choHof1.scaffold_59997 C 0 I 3 s xenTro2.scaffold_677 205597 22 + 553670 TA-TGAATGTCTTAA-AAAACATT-- i xenTro2.scaffold_677 C 0 I 2 s fr2.chrUn 102971067 14 - 400509343 TG-TGACA---------ATTGACa-- i fr2.chrUn C 0 N 0 s gasAcu1.chrXIII 16788877 21 + 20083130 TG-TGGCT-CCTTGT-TGTTGTCG-- i gasAcu1.chrXIII I 2541 I 12 s oryLat2.chr17 11090520 14 + 31848461 ------CA-CCTGA---ACTGACG-- i oryLat2.chr17 C 0 I 17 s danRer6.chr4 43785095 21 - 71658100 TT-TAGTT-TGCTTT-TGTTTGCC-- i danRer6.chr4 C 0 I 137 s petMar1.Contig43357 4926 22 - 11193 TGCTGact---ttgc-aaatgccttc i petMar1.Contig43357 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e dipOrd1.scaffold_79724 2447 10 + 3406 I e oryCun2.chrUn0106 657915 1709 + 1032594 I e tetNig2.chrUn_random 51494410 10552 - 107808587 T a score=193800.000000 s hg19.chrUn_gl000223 48806 49 + 180455 TTA---TATTTA-TCACAGTCATAGTA-------TTTTAACC-AGGTATCAGTATCCTCAG s panTro2.chr12 176055 49 - 135371336 TTA---TATTTA-TCACAGTCATAGTA-------TTTTAACC-AGGTATCAGTATCCTCAG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2857 49 + 8399 TTA---TATTTA-TCACAGTCATAGTA-------TTTTAACC-AGGTATCAGTATCCTCAG i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213823 49 - 136387465 TTA---TATTTA-TCACAGTCATAGTA-------TTTTAACC-AGGTATCAGTATCCTCAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186616 49 - 134511895 TTA---TATTTA-TCACAGTCATAGTA-------CTTTAACC-AGGTATCAGTATCCTCAG i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6165 51 + 26550 TTATCGTATTTA-TCACATTCGTAGTA--------TTTAACC-AAGTATCAGTTTCCTCAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2725 52 - 57811 TTATCATATGTA-TCACCTTCATAGTA-------TTTTAACC-AAGGATCAGTATCCTCAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s speTri1.scaffold_84809 339 52 - 11041 TTACCACATTTA-TCACATTCATAGTA-------TTTCAACC-AAGAATCAGTTTCCTCAG i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 214306 52 + 667635 CTATCACATTTA-TCACACTGATAGTA-------TTTTAACC-AAGTATCCGCTTCCTGAG i cavPor3.scaffold_248 C 0 C 0 s dipOrd1.scaffold_79724 2457 50 + 3406 -TTTTTTGTTTT-TGTCAGTCATAGGT-------CTTGGGCC-TGGGCGCTG-TACCTCAG i dipOrd1.scaffold_79724 I 10 I 422 s bosTau4.chr17 29955554 44 - 76506943 --------TTTA-TCACATGCATAGTA-------TTTTAACC-AAGTATCAGTTTCCTCAG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3178684 49 + 42029645 ttat---attta-tcatattcataata-------tttTAACC-AAGTATCAGTTTCCTCAG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 72833 37 - 81011 ttatca-atttattcatattcatagta-------tttTAACC-AAG--------------- i felCat3.scaffold_141210 C 0 M 543 s equCab2.chr8 64134964 52 - 94057673 TTATCATATTTA-TCACATTCATAGTA-------TTTTAACC-AAGCATCAGTTTCCTCAG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 1232 34 + 15804 TTGT---AACTG-GCAAAATTAGAGTA-------TTTTAACC-AAG--------------- i sorAra1.scaffold_196587 I 3 I 16 s loxAfr3.scaffold_113 96657 49 - 3408981 ---TCATATTTA-TCATACTCATAGTA-------TTTTAACC-AAGTGTCAGTTTCCTCAG i loxAfr3.scaffold_113 I 3 C 0 s choHof1.scaffold_59997 9938 49 + 12755 ---TCATATTTA-TCACATTCATAGTA-------TTTTAACC-ATGTATCAGTTTCTTCAG i choHof1.scaffold_59997 I 3 C 0 s xenTro2.scaffold_677 205621 49 + 553670 ---CCACATTCA-GAACAAGAAAAAGG-------TTTCTCCC-CTGTGTGAGTTACTTGAT i xenTro2.scaffold_677 I 2 I 9 s petMar1.Contig43357 4948 37 - 11193 ---tcacacaca-ctgcacttgaaggg-------tttctctc-ctgtgt------------ i petMar1.Contig43357 C 0 n 0 s oryLat2.chr17 11090551 39 + 31848461 ------------------GTCACAGGAATAAGGCCTTtcacctgtgtg----aattctcat i oryLat2.chr17 I 17 C 0 s gasAcu1.chrXIII 16788910 31 + 20083130 ------------------ACCACAAAA-------CGTTCACA-GTCTA----TTTCCTCAT i gasAcu1.chrXIII I 12 I 17 s oryCun2.chrUn0106 659624 23 + 1032594 -------------------------------------TAACC-ATGTATCAGTTTCATCAG i oryCun2.chrUn0106 I 1709 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e danRer6.chr4 43785116 137 - 71658100 I e tetNig2.chrUn_random 51494410 10552 - 107808587 T a score=223852.000000 s hg19.chrUn_gl000223 48855 44 + 180455 GCTTG--GAATGGA--GAAAAAAATTATCAAACACA------TTAAAGTCATCT s panTro2.chr12 176104 44 - 135371336 GCTTG--GAATGGA--GAAAAAAATTATCAAACACA------TTAAAGTCATCT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2906 44 + 8399 GCTTG--GAATGGA--GAAAAAAATTATCAAACACA------TTAAAGTCATCT i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 213872 44 - 136387465 GCTTG--GAATGGA--GAAAAAAATTATCAAACACA------TTAAAGTCATCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186665 44 - 134511895 GCTTG--GAATGGA--GAAAAAAATTATCAAACACA------TTAAAGTCATCT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6216 44 + 26550 GTTTG--GAATGGA--GAAATAATTTGTCAAATATA------TCGAAGCCATCT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2777 44 - 57811 GTTTG--GTATGGA--GAAAGAATTTATCAAAGACA------CTGAAGTCATTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214358 44 + 667635 GCTTG--GTATTGA--GAAATAATTTATTGAATACA------TTAAAGTCATCT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 391 44 - 11041 GTTCA--GTATTGA--GAAACAATTTATTAAATACA------TTCAAGTCATCT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659647 44 + 1032594 GCTTG--GTGTGGA--GAAACAATTTATCAAACACA------GTAAAGTCATCT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955598 44 - 76506943 TCTTG--GTATGGA--GAAATAATTTATCAAATATG------TTTAAGTCAGCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135016 44 - 94057673 GTCTG--GTATGGA--GAAACAACTTATCAAAAACA------TTGAGGTCACCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3178733 44 + 42029645 GCTTG--GTATGCA--GAAACAATTTATCAAATACA------CTTAAGCCATCT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1282 44 + 15804 GCTTA--GCgtgaa--taaataatttatcaaataCT------TTTAAATCTTCT i sorAra1.scaffold_196587 I 16 C 0 s loxAfr3.scaffold_113 96706 44 - 3408981 GCTTG--GCATCGA--GAAATAATTTATCAAATACA------TTAAAGTCATTT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 9987 44 + 12755 GCTTG--GTATGGA--GAAATAATTTATCAAATACA------TTAAAGTCATCT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205679 29 + 553670 GGTTG--GATCGAATTGAAAAATATTTTCCA----------------------- i xenTro2.scaffold_677 I 9 I 64 s oryLat2.chr17 11090590 18 + 31848461 gtgga--TTTTCAA--GTAACT-------------------------------- i oryLat2.chr17 C 0 C 0 s gasAcu1.chrXIII 16788958 18 + 20083130 GTGCT--AGCTGGA--GGCTCT-------------------------------- i gasAcu1.chrXIII I 17 C 0 s danRer6.chr4 43785253 18 - 71658100 GTCTG--AAATAAA--AAATTT-------------------------------- i danRer6.chr4 I 137 I 14 s petMar1.Contig2426 26956 52 - 37044 atttgatgactgtg--caaatgccttctcacacacagtgcacttgaaatgtttc i petMar1.Contig2426 T 592 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e felCat3.scaffold_141210 72870 543 - 81011 M e dipOrd1.scaffold_79724 2507 422 + 3406 I e tetNig2.chrUn_random 51494410 10552 - 107808587 T a score=84424.000000 s hg19.chrUn_gl000223 48899 25 + 180455 GATTCTGC---T----TTTCCATAATCTCCTT s panTro2.chr12 176148 25 - 135371336 GATTCTGC---T----TTTCCATAATCTCCTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 2950 25 + 8399 GATTCTGC---T----TTTCCATAATCTCCTT i gorGor1.Supercontig_0030964 C 0 I 898 s ponAbe2.chr12 213916 25 - 136387465 GATTCTGC---T----TTTCCATAATCTCCTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 186709 25 - 134511895 GATTCTGC---T----TTTCCATAATCTCCTT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6260 25 + 26550 GATTCTGT---T----TTTCCACAGTCTGATT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2821 25 - 57811 GATTCCAT---T----TTTCCATGATCTGTTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214402 25 + 667635 GACTCTCT---T----CTTTCACAGTCTGCTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 435 25 - 11041 GATTCCAT---T----CTTCCATAATCTGCTC i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659691 25 + 1032594 GATTGCAT---T----CTTCCATAATCTGTTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955642 25 - 76506943 GGTTCCAT---T----CTTCCATAGTTTGCTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135060 25 - 94057673 GGTTCTGT---T----TTTCCATAATCTGCTT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3178777 25 + 42029645 GGTTCTGT---T----TTTCCATAATCTGCTT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1326 10 + 15804 AATTTCA----------------------CTT i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96750 25 - 3408981 GGTTCTGT---T----TTTTCATAATCAGCTT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 10031 25 + 12755 GGTTTTGG---T----TTTTCATAATCTGCTT i choHof1.scaffold_59997 C 0 C 0 s tetNig2.chr2 18077189 21 - 21591555 GGTTCTGT---T----CAAGTGCAGCTT---- i tetNig2.chr2 n 10552 C 0 s gasAcu1.chrXIII 16788976 21 + 20083130 GTCTCTGA---T----TCACTCTGACTT---- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11090608 25 + 31848461 ACTTATAG---TGAAACCTTTTCCACAT---- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43785285 12 - 71658100 ----------------TCATTAAAACTC---- i danRer6.chr4 I 14 C 0 s petMar1.Contig2426 27008 28 - 37044 tctcctgtgtgt----gttctatggtgttttt i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e felCat3.scaffold_141210 72870 543 - 81011 M e dipOrd1.scaffold_79724 2507 422 + 3406 I e xenTro2.scaffold_677 205708 64 + 553670 I a score=189582.000000 s hg19.chrUn_gl000223 48924 39 + 180455 TTGGAATAAGCAAATCT--AAATGATGTTTTAAAATCAATC s rheMac2.chr11 186734 39 - 134511895 TTGGAATAAGCAAATCT--AAATGATGTTTTAAAATCAATC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 213941 39 - 136387465 TTGGAATAAGCAAATCT--AAATGATGTTTTAAAATCAATC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176173 39 - 135371336 TTGGAATAAGCAAATCT--AAATGATGTTTTAAAATCAATC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6285 39 + 26550 TTGGAATAAACAAATCT--AAATGATGTTTTAAAAACAATG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2846 39 - 57811 TTGGAATAAGCAAATCT--AAATGATGTTTCAAAATCAGTC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214427 39 + 667635 CTGGGATAAGCAAATTT--AAATTATCTTCCAAAATCAACC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 460 39 - 11041 TTGGAATAAGCAAATCT--AAATGATGTCTTAAAATCAATC i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659716 39 + 1032594 CTGGAATTAACAAATCT--AAATTATGTTTTAAAATCAACC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955667 39 - 76506943 TCGGAATAAGAAAATCT--AAATGATGTTTTAAAATTAATC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135085 39 - 94057673 TTGGAATAAGTAAATCT--AAATGATGTTTTAAAATTAATC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3178802 39 + 42029645 TTGGAATAAGTAAATCT--AAGTGACGTTTTAAAAGTAATG i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1336 39 + 15804 TTGGAAAAAGTAAATCT--AAAAGATGCTTTAAAACTATTT i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96775 39 - 3408981 TTGGAATAAGTAAATCT--AAATGATGTTTTAAAACTATTC i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 10056 39 + 12755 TTGGAATAACCAAATCT--AAATGATGCTTTAAAATTATTC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205772 29 + 553670 ----TATAAG------T--AAATTGTTTCTGACACTCATTG i xenTro2.scaffold_677 I 64 C 0 s tetNig2.chr2 18077210 27 - 21591555 TAAAGAGGAGTAGA--------------GTTTAAATTTGCT i tetNig2.chr2 C 0 I 17 s gasAcu1.chrXIII 16788997 18 + 20083130 CTGTCAGGATTCAA------------------AAAC----- i gasAcu1.chrXIII C 0 I 6 s oryLat2.chr17 11090633 23 + 31848461 ACATCACAAGTGAA------------------AGGCCTCtc i oryLat2.chr17 C 0 I 14 s danRer6.chr4 43785297 35 - 71658100 TCATCAAAAGCTGAAGT--AAA-AATGCAGTAAAACAT--- i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27036 41 - 37044 taagatttgatgactgtgcgAATGCCTtcttacacacactg i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e gorGor1.Supercontig_0030964 2975 898 + 8399 I e felCat3.scaffold_141210 72870 543 - 81011 M e dipOrd1.scaffold_79724 2507 422 + 3406 I a score=44824.000000 s hg19.chrUn_gl000223 48963 17 + 180455 CATCTAAGTC-------------------ACCTTCA-- s rheMac2.chr11 186773 17 - 134511895 CATCTAAGTC-------------------ACCTTCG-- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 213980 17 - 136387465 CATCTAAGTC-------------------ACCTTCA-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176212 17 - 135371336 CATCTAAGTC-------------------ACCTTCA-- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6324 17 + 26550 CATTTAAGTC-------------------ACCTGTG-- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2885 17 - 57811 CATCTAAGTC-------------------ACCTTCA-- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214466 17 + 667635 CATGTAAGTC-------------------ACCTTCA-- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 499 17 - 11041 CATCTAAGTC-------------------ACCTTCA-- i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659755 17 + 1032594 CATCTAAGTC-------------------GCTTTCA-- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955706 17 - 76506943 CATCTATGTC-------------------ACCTTCT-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135124 17 - 94057673 CATCTACATC-------------------AGCTTCA-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3178841 17 + 42029645 CATCTACATC-------------------ATCTTCA-- i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1375 17 + 15804 CATTTACAtc-------------------atcttca-- i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96814 17 - 3408981 CATCTAAGTC-------------------ATTTCCA-- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 10095 17 + 12755 CATCTAAGCC-------------------ACCTTCC-- i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205801 17 + 553670 CAGCTGTATT-------------------TCCTACA-- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077254 17 - 21591555 CGTAATTATC-------------------ACTtgga-- i tetNig2.chr2 I 17 C 0 s fr2.chrUn 117673573 31 - 400509343 tgtctgtatcacagtccac-----tgctgactctgc-- i fr2.chrUn N 0 C 0 s gasAcu1.chrXIII 16789021 15 + 20083130 --TCATCATC-------------------ACTGTGA-- i gasAcu1.chrXIII I 6 C 0 s oryLat2.chr17 11090670 8 + 31848461 --tca--------------------------tgtga-- i oryLat2.chr17 I 14 C 0 s danRer6.chr4 43785332 24 - 71658100 ------------TGGCTACACAAACCTTAATTTTGA-- i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27077 19 - 37044 cacttgaagg-------------------gtttttctc i petMar1.Contig2426 C 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e gorGor1.Supercontig_0030964 2975 898 + 8399 I e felCat3.scaffold_141210 72870 543 - 81011 M e dipOrd1.scaffold_79724 2507 422 + 3406 I a score=98701.000000 s hg19.chrUn_gl000223 48980 15 + 180455 CT--------GTTTGATTTCCTT s rheMac2.chr11 186790 15 - 134511895 TT--------GTTTGATTTCCTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 213997 15 - 136387465 TT--------GTTTGATTTCCTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176229 15 - 135371336 CT--------GTTTGATTTCCTT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6341 15 + 26550 TT--------GTTTGATTTCCTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2902 15 - 57811 CT--------GTTTGATTTCCTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214483 15 + 667635 TT--------GTTTGATTTTCTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 516 15 - 11041 TC--------ATTTGATTTACTT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659772 15 + 1032594 TT--------GTGCGATTTCTTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955723 15 - 76506943 TT--------GTTTGATTTCCTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135141 15 - 94057673 TT--------GTTTGATTTCCTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73418 15 - 81011 CT--------GTTTGATTTCCTT i felCat3.scaffold_141210 M 543 C 0 s canFam2.chr26 3178858 15 + 42029645 CT--------GTTTGATTTCCTT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1392 15 + 15804 tt--------attttatttcctt i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96831 15 - 3408981 CT--------GTGTGATTTCCTT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 10112 15 + 12755 TT--------GCTTGCTTTCCTT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205818 14 + 553670 -T--------AATGCATTTTCTG i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077271 15 - 21591555 aa--------gtgtgttttcatg i tetNig2.chr2 C 0 C 0 s fr2.chrUn 117673604 14 - 400509343 tg--------ggctgtttacat- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16789036 10 + 20083130 ------------TCAGTTTCCT- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11090678 14 + 31848461 tG--------GGTCAAATTCCT- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43785356 23 - 71658100 TGCACATTAAATGTAAAAACATA i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 27096 15 - 37044 ct--------gtgtgtgttcttt i petMar1.Contig2426 C 0 N 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e gorGor1.Supercontig_0030964 2975 898 + 8399 I e dipOrd1.scaffold_79724 2507 422 + 3406 I a score=180754.000000 s hg19.chrUn_gl000223 48995 36 + 180455 AAAGGAA----CAA--------AGTTCATGTTCAGATTGAAATTTTTT s rheMac2.chr11 186805 36 - 134511895 AAAGGAA----CAA--------AGTTCATGTTCAGATTGAAATTTTTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214012 36 - 136387465 AAAGGAA----CAA--------AGTTCATGTTCAGATTGAAATTTTTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176244 36 - 135371336 AAAGGAA----CAA--------AGTTCATGTTCAGATTGAAATTTTTT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6356 36 + 26550 AAAGGAA----CAA--------AGTTCAAACTTAGATTGAATTTTTTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2917 36 - 57811 AATGGAA----CAA--------AGTTCATGCTCAGATTGAATTTTTTC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214498 36 + 667635 AAAGGAA----CAA--------AATCCACACTGAGAGTGAAATTTTTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 531 36 - 11041 AAAGAAA----CAA--------CGTTCATACTTGGATTGAAATTTTTT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659787 36 + 1032594 AAAGGAA----CAA--------AGTTCATGTTCAGATTAAATTTTTTC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955738 36 - 76506943 AAAGGAA----TAA--------AGTTCATGCTCAGATTAAACTTTTTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135156 36 - 94057673 AAAGGAA----CAA--------AGTTCATGCTCAGATTGAAATTTTTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73433 36 - 81011 AAAGGAA----CAA--------AGTTCATGCTCAGATTGAGTTTTTTT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3178873 36 + 42029645 AAAGGAA----TCA--------AGTTCATGCTCAGATTGAATTTTTTT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1407 35 + 15804 gcagGAG----CAA--------AGTTTATGTACAAATCAAAC-TTATT i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96846 36 - 3408981 ACAGGAA----CAA--------AGTTCATGTTCAGATTGAGTTTTTTC i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 10127 36 + 12755 AAAGGAA----CAA--------AGTTCATACTCAGATTGATTTTTTTC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205832 34 + 553670 TTATG------TGA--------GATTTATGTGGAGATTGGAGGGTATT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077286 31 - 21591555 tgaGATT----TCA--------GGCTTGTATTGA-----CGTCCTCCT i tetNig2.chr2 C 0 I 1 s fr2.chrUn 117673618 30 - 400509343 -----tc----cca--------gtctgacattta-ggatggttctgct i fr2.chrUn C 0 I 1 s gasAcu1.chrXIII 16789046 36 + 20083130 ------------CACTAGTGGGAGTCAACGTAAAGGTGTCGGCCTCCT i gasAcu1.chrXIII C 0 I 8 s oryLat2.chr17 11090692 20 + 31848461 ------------CA--------AGGAAACGAAAA--------CCTTCT i oryLat2.chr17 C 0 I 1 s danRer6.chr4 43785379 40 - 71658100 GCAGATCATATTTA--------GATTGATCTTGTCATATCAACCTCCT i danRer6.chr4 C 0 I 10 s petMar1.Contig5115 13822 34 + 23967 AAAGATA----TAA--------A--TTATGCCCAAGTTCAATTTATTC i petMar1.Contig5115 N 0 C 0 e dasNov2.scaffold_7587 19225 2397 + 154172 M e gorGor1.Supercontig_0030964 2975 898 + 8399 I e dipOrd1.scaffold_79724 2507 422 + 3406 I a score=94565.000000 s hg19.chrUn_gl000223 49031 29 + 180455 CCAAATGCATCACATT-------------------------CATGACCTCT-----TTT s rheMac2.chr11 186841 29 - 134511895 CCAAATGCATCACATT-------------------------CATGACCTCT-----TTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214048 29 - 136387465 CCAAATGCATCACATT-------------------------CATGACCTCT-----TTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176280 29 - 135371336 CCAAATGCATCACATT-------------------------CATGACCTCT-----TTT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6392 29 + 26550 CCAAATGTGTCACATT-------------------------CAACACCTCT-----TTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2953 29 - 57811 CAAAATGCATCACATT-------------------------CATGCCCTTT-----TTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214534 29 + 667635 CCAAGTGCATCCCATT-------------------------CATGACATCT-----TTT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 567 29 - 11041 CCAAATGCATCCCATT-------------------------CATGACCTTT-----TTT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659823 26 + 1032594 CCAAATGCATCACATT-------------------------CATAAC---T-----TTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955774 29 - 76506943 CCAAGTGCATCACATT-------------------------CATGATCTTG-----TTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135192 29 - 94057673 CCAAATGCATCACATT-------------------------CATGATCTCG-----TTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73469 29 - 81011 CCAAATGCATCACATT-------------------------CGTGATCCTG-----TTT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3178909 29 + 42029645 CCAAATGCATCACATT-------------------------CATCATCTTG-----TTT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1442 29 + 15804 AAAATTGAGTCACACT-------------------------GATGatccta-----ttt i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96882 29 - 3408981 CCAAATGCATCACATC-------------------------CATTACCTCT-----CTT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21623 28 + 154172 CCAACTGCATCATA-T-------------------------CATGACCTCT-----TTT i dasNov2.scaffold_7587 M 2397 C 0 s choHof1.scaffold_59997 10163 29 + 12755 CCAACTGCATCACATT-------------------------CGTGAACTCT-----TTT i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205866 13 + 553670 --------------TT-------------------------TATTACCCTT-----C-- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077318 30 - 21591555 ---------GCAGATT------------AGGCATTGGA---TGTGAGCttt-----ttt i tetNig2.chr2 I 1 C 0 s fr2.chrUn 117673649 13 - 400509343 -----------------------------------------catggtttgt-----ttt i fr2.chrUn I 1 N 0 s gasAcu1.chrXIII 16789090 45 + 20083130 ---------TCAAGCTGCTCTCCCTCCTGACTGCTGCACAGTTCCTCCTGT-----TCC i gasAcu1.chrXIII I 8 I 4 s oryLat2.chr17 11090713 41 + 31848461 ---------ACAGACT------TTACAAGAATATGGCA---TTTCACCTGTGTGAGTCC i oryLat2.chr17 I 1 I 2 s danRer6.chr4 43785429 26 - 71658100 ---------ACACACA------------------TGTACA-TTTAAGCAGA-----TTC i danRer6.chr4 I 10 I 3 s petMar1.Contig5115 13856 10 + 23967 -----TCTGCCACAT-------------------------------------------- i petMar1.Contig5115 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e dipOrd1.scaffold_79724 2507 422 + 3406 I a score=168420.000000 s hg19.chrUn_gl000223 49060 32 + 180455 TATAATTTTAAGCTTGTCTTGGTTATCCTGGT- s rheMac2.chr11 186870 32 - 134511895 TATAATTTTAAGCTTGTCTTGGTTATCCTGGT- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214077 32 - 136387465 TATAATTTTAAGCTTGTCTTGGTTATCCTGGT- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176309 32 - 135371336 TATAATTTTAAGCTTGTCTTGGTTATCCTGGT- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6421 32 + 26550 CATATTTTTAAGCTTGTCTTGGTTATCCCGGT- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 2982 32 - 57811 CCCGTTTTTAAGCTTGTTATGATTATCCGGGT- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214563 32 + 667635 CAAACTTCTAGGCTGGTCTTGGCTGTCCTGTT- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 596 32 - 11041 CACATTTTTAAGCTTGTCTTGGTTATCCTGGT- i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659849 32 + 1032594 CATATTTTTACGCTTGTCTTGGTTATTCTTGA- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955803 29 - 76506943 CATATTTTTAAACTTCTT---GTTATCCTTGT- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135221 32 - 94057673 CCTGTTTTTAAGCTTCTCTTGGTTATCTTGGT- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73498 32 - 81011 CAGATTTCTAAGCTTCTCCTGGTCATCCTGGC- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3178938 32 + 42029645 CATATTTCTAAGCTTCTCCTGGTTATCTTGGT- i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1471 32 + 15804 tctatttttaagcttCTCTTGGTTATCTTAAT- i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 96911 32 - 3408981 CAGAATCTTAAGCTTGTCTTGGTTATCCTGAT- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21651 31 + 154172 CATA-TTTTAAGCATGACTTGGTTATCCTGGT- i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 10192 32 + 12755 CATATTTTTAAGCATGCCTTGGTTATCCTGGT- i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205879 19 + 553670 ---ATTTTTAA----------GATATTCAGGC- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077348 24 - 21591555 ttCAGTACGAGATTTCC------TCCTTGA--- i tetNig2.chr2 C 0 C 0 s gasAcu1.chrXIII 16789139 21 + 20083130 TAATCTGTGGAGG-----------ATCTGGGT- i gasAcu1.chrXIII I 4 I 5078 s oryLat2.chr17 11090756 22 + 31848461 ----ATGTGGAGTTTGC------CATTTGGTT- i oryLat2.chr17 I 2 N 0 s danRer6.chr4 43785458 26 - 71658100 -----TATGATTGATCCC-AGATCATTTTGGT- i danRer6.chr4 I 3 I 9 s petMar1.Contig5115 13866 30 + 23967 TATAATTTTAAATCAAtctt---tatacaaaaa i petMar1.Contig5115 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e dipOrd1.scaffold_79724 2507 422 + 3406 I a score=139363.000000 s hg19.chrUn_gl000223 49092 22 + 180455 GCCACATCATGTTACCA---------TCTAC s rheMac2.chr11 186902 22 - 134511895 GCCACATCATGTTACCA---------TTTAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214109 22 - 136387465 GCCACATCATGTTACCA---------TCTAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176341 22 - 135371336 GCCACATCATGTTACCA---------TCTAC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6453 22 + 26550 GCCACATCATGTGACCA---------TCTAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3014 22 - 57811 GCCATGTCAGGCAATGA---------TCTAC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214595 22 + 667635 GCCATGTCACGTGATCC---------TCTAC i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 628 22 - 11041 GCCACTTCATGTGACCA---------TCTAC i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659881 22 + 1032594 AGCACATCATGTGACTA---------TCCAC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955832 22 - 76506943 GCCAAGTCATGTGACCA---------TTTAC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135253 22 - 94057673 GCCATGTCATGTGACTG---------CTTAC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73530 22 - 81011 GCCACGTCATGTGACCA---------TTTCC i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3178970 22 + 42029645 GCCATGTCATGTGACCA---------TTTAC i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1503 22 + 15804 GCTGTTTCGTATGAGCA---------TCTAC i sorAra1.scaffold_196587 C 0 I 1 s loxAfr3.scaffold_113 96943 22 - 3408981 GGCACAGCATGTGACCA---------TCTAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21682 22 + 154172 GCCACATCATGTGACCA---------TCTAC i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 10224 22 + 12755 GCCACACCATGTGACCA---------TCTAC i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205898 31 + 553670 TGCACCCCATGATAGGAGTAGGTGTGTCTGT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077372 19 - 21591555 GGCACTTGATTTCCTGT---------GC--- i tetNig2.chr2 C 0 C 0 s danRer6.chr4 43785493 19 - 71658100 GAGACATAAATTTGAAA---------GC--- i danRer6.chr4 I 9 C 0 s petMar1.Contig5115 13896 22 + 23967 aatacatgaactTGTCC---------TACAC i petMar1.Contig5115 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e dipOrd1.scaffold_79724 2507 422 + 3406 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I a score=68719.000000 s hg19.chrUn_gl000223 49114 20 + 180455 TTTCCAGA---CT---TCTATAAAG----G s rheMac2.chr11 186924 20 - 134511895 ATTCCAGA---CT---TCTATAAAG----G i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214131 20 - 136387465 TTTCCAGA---CT---TCTATAAAG----G i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176363 20 - 135371336 TTTCCAGA---CT---TCTATAAAG----G i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6475 23 + 26550 TTGCCAGG---CTTCCTCTATAAAG----G i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3036 23 - 57811 TTGCAAGA---CTTCTTCTATAAGG----G i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2929 20 + 3406 TTGCCAAG---TT---TCTATAAAG----G i dipOrd1.scaffold_79724 I 422 C 0 s cavPor3.scaffold_248 214617 20 + 667635 TTGCCAGA---CT---TCTATAATG----G i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 650 20 - 11041 TTGACAGA---CT---TCTACAAAG----G i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659903 23 + 1032594 TTGCCAGACTTCT---TCTACAAAG----G i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955854 27 - 76506943 TTGAAAGA---CTTGATCTATGAAGGAAAA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64135275 23 - 94057673 TTGTAAGA---GTTGTTCTATAAAG----A i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73552 23 - 81011 TTGCAAGT---CTTGTTCTACAAAG----A i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3178992 23 + 42029645 TTGCAAGA---CTTGTTCTATAAAG----A i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 1526 20 + 15804 TTGCCAGA---C---ATCTATGAAG----G i sorAra1.scaffold_196587 I 1 C 0 s loxAfr3.scaffold_113 96965 23 - 3408981 TTGCCAGA---CTTCTTCTATAAAG----A i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21704 22 + 154172 TTGCCAGA----TTCTTCTACAAAG----A i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 10246 23 + 12755 TTGCCAGA---TTTCTTCTACAAAG----A i choHof1.scaffold_59997 C 0 C 0 s xenTro2.scaffold_677 205929 23 + 553670 TCCCTGTA---TCTGTTCTGTAAGG----G i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr2 18077391 20 - 21591555 TTTCCTGA---TCTA-CTGGTAAG------ i tetNig2.chr2 C 0 I 3 s danRer6.chr4 43785512 18 - 71658100 TGTA--AA---TTTC-TCTGTaag------ i danRer6.chr4 C 0 I 12 s petMar1.Contig5115 13918 20 + 23967 TGGCCAGA---TTCAGAATCCAA------- i petMar1.Contig5115 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I a score=-173033.000000 s hg19.chrUn_gl000223 49134 28 + 180455 AAACAAAA--------ACAA-------TCTGTTTGGT------------TGTG----CT s rheMac2.chr11 186944 27 - 134511895 AAAAAAAA--------AAAA--------AAGTTTGGT------------TGTG----CT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214151 28 - 136387465 AAACAAAA--------AAAA-------TCTGTTTGGT------------TGTG----CT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176383 28 - 135371336 AAACAAAA--------AAAA-------TCTGTTTGGT------------TGTG----CT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6498 26 + 26550 AAACAAAA----------AA-------TCTGTTTGGT------------TGTG----CT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3059 25 - 57811 AAACAAA-----------AA-------TATGTTTGGT------------TGTG----CT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2949 28 + 3406 AAAC--AA----------AA-------CCTTTATGGT------------GGTGCTTATT i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 214637 26 + 667635 AAACAGAA----------AA-------CCTATTTGGC------------TGTG----GT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 670 26 - 11041 AAACAAAA----------CA-------CCCATTTGGT------------TATG----CT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659926 26 + 1032594 AAACAAAA----------AA-------CCTGTTTGGT------------TCTG----GT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955881 19 - 76506943 AAAAAAAT--CCCATAAGTC-------T------------------------------- i bosTau4.chr17 C 0 I 15 s equCab2.chr8 64135298 34 - 94057673 AAAAAAAC--CCTGTGAATC-------CCTCTATCAT------------TGTG----GT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73575 34 - 81011 AATAAAAA--CCTGTGAATG-------TTTCTGTGGT------------TGTC----TT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179015 33 + 42029645 AAGAAAAC--CCTGTGAATG-------CTTCTATAGT------------TGTG----t- i canFam2.chr26 C 0 I 215 s sorAra1.scaffold_196587 1546 34 + 15804 GGGGAAAC--CCTGTGAATC-------TTTCTATACT------------TGTA----Ct i sorAra1.scaffold_196587 C 0 I 10 s loxAfr3.scaffold_113 96988 36 - 3408981 AAAGAAAAAATCTGTGACTC-------TTTCTGTGGC------------TGTG----CA i loxAfr3.scaffold_113 C 0 I 5 s dasNov2.scaffold_7587 21726 33 + 154172 AAACAAAAAACCAGTGAATC----------CTATGGT------------TGAG----TT i dasNov2.scaffold_7587 C 0 I 5 s choHof1.scaffold_59997 10269 36 + 12755 AAACAAAAAACCAGTGAATC-------TTTCTATGGT------------TGAG----TT i choHof1.scaffold_59997 C 0 I 5 s xenTro2.scaffold_677 205952 25 + 553670 GATTAATG------CTGCAA-------TCTGATTGGT------------T--------- i xenTro2.scaffold_677 C 0 I 7158 s tetNig2.chr2 18077414 17 - 21591555 -------------ACTGAAG-------CCTTGTTTTT---------------------- i tetNig2.chr2 I 3 I 7 s oryLat2.chr17 11714041 24 + 31848461 -------------ACACAAGTACATGATATTATtctt---------------------- i oryLat2.chr17 N 0 I 7 s danRer6.chr4 43785542 29 - 71658100 -------------actcaga-------cctgattactaccacacatgtt---------- i danRer6.chr4 I 12 I 12 s petMar1.Contig5115 13938 25 + 23967 ATACCAAA--------GTAA-------AATATTCAGT------------TTT------- i petMar1.Contig5115 C 0 T 1509 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I a score=-82577.000000 s hg19.chrUn_gl000223 49162 19 + 180455 TTCT--Aaaaacaaaacaaaa s rheMac2.chr11 186971 12 - 134511895 TTCT--AAAA-------AAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214179 21 - 136387465 TTCTAAAaaaacaaaacaaaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176411 19 - 135371336 TTCT--Aaaaacaaaacaaaa i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6524 8 + 26550 TACT--AAGT----------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3084 8 - 57811 TCCT--GAAT----------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2977 8 + 3406 TGAA--TGAA----------- i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 214663 8 + 667635 TCAT--GGAA----------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 696 8 - 11041 TAAC--TAAA----------- i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659952 8 + 1032594 TGCT--GGAG----------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955915 7 - 76506943 TATT--GAA------------ i bosTau4.chr17 I 15 C 0 s canFam2.chr26 3179263 7 + 42029645 TACT--GAA------------ i canFam2.chr26 I 215 C 0 s felCat3.scaffold_141210 73609 7 - 81011 TCCT--AAG------------ i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64135332 7 - 94057673 CACT--GAA------------ i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_196587 1590 7 + 15804 aaca--aaa------------ i sorAra1.scaffold_196587 I 10 I 4382 s loxAfr3.scaffold_113 97029 7 - 3408981 AATA--AAA------------ i loxAfr3.scaffold_113 I 5 C 0 s dasNov2.scaffold_7587 21764 7 + 154172 TATT--AAA------------ i dasNov2.scaffold_7587 I 5 C 0 s choHof1.scaffold_59997 10310 7 + 12755 AATT--AAA------------ i choHof1.scaffold_59997 I 5 C 0 s tetNig2.chr2 18077438 7 - 21591555 GATT--ACT------------ i tetNig2.chr2 I 7 C 0 s oryLat2.chr17 11714072 7 + 31848461 aaca--aga------------ i oryLat2.chr17 I 7 C 0 s danRer6.chr4 43785583 7 - 71658100 atca--cca------------ i danRer6.chr4 I 12 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e xenTro2.scaffold_677 205977 7158 + 553670 I a score=19486.000000 s hg19.chrUn_gl000223 49181 23 + 180455 caaaacaa-aacT-AGAAATGCT-AT--------- s rheMac2.chr11 186983 23 - 134511895 AAAAAAAA-AACT-AGAAATGCT-AT--------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214200 23 - 136387465 caaaacaa-aaca-gaaAATGCT-AT--------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176430 23 - 135371336 caaaacaa-aacT-AGAAATGCT-AT--------- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6532 19 + 26550 ----AAGA-AAGT-AGAAATGCT-GT--------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3092 21 - 57811 ---AAAAA-AACT-AGAAATGCTAAT--------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 2985 20 + 3406 ---TAAAA-AACC-AGAAATGCT-AT--------- i dipOrd1.scaffold_79724 C 0 C 0 s cavPor3.scaffold_248 214671 20 + 667635 ---AAAAA-CACT-ACAAATGCC-AT--------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 704 11 - 11041 ---T-----------GAAATGCT-AT--------- i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659960 21 + 1032594 ---AAAAG-AACCTAGAAATGCT-AT--------- i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64135339 20 - 94057673 ---TAAAA-AATG-AGAAATGCT-AT--------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73616 20 - 81011 ---TGAAA-AACC-AGCTATGCT-AT--------- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179270 20 + 42029645 ---TAAAA-AATG-AGCAATGCT-GT--------- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29955922 20 - 76506943 ---TAAAA-ACCT-AGAAATGCT-AT--------- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 97036 15 - 3408981 ---AACAA-------GAAATGCT-GT--------- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21771 21 + 154172 ---AAAAACAAAC-AGAAATGCT-AT--------- i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 10317 20 + 12755 ---AAAAA-ATAA-AGAAATGCT-AT--------- i choHof1.scaffold_59997 C 0 C 0 s tetNig2.chr2 18077445 26 - 21591555 ------GA-AGTC-AAAGGTGTA-CACTGAGCACC i tetNig2.chr2 C 0 n 0 s oryLat2.chr17 11714079 12 + 31848461 ------aa-aacc-aaGAAT--------------- i oryLat2.chr17 C 0 I 95 s danRer6.chr4 43785590 26 - 71658100 ------ta-gacc-aaaagagcc-tcaaaagctgt i danRer6.chr4 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e xenTro2.scaffold_677 205977 7158 + 553670 I a score=84788.000000 s hg19.chrUn_gl000223 49204 60 + 180455 GTTGAGGGGTTGGCTGC------------------------------------------------------------------------------------------------TT-TTAAGG-CTTAGTTTCCGAG---TCTGAAATAAGTCCC-AAGTATA s rheMac2.chr11 187006 60 - 134511895 GTTGAGGGGTTGGCTGC------------------------------------------------------------------------------------------------TT-TTAAGG-CTTAGTTTCCTAG---TCTGAAGTAAGTCCC-AAGTATA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214223 60 - 136387465 GCTGAGGGGTTGGCTGC------------------------------------------------------------------------------------------------TT-TTAAAG-CTTAGTTTCCGAG---TCTGAAATAAGTCCC-AAGTATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176453 60 - 135371336 GCTGAGGGGTTGGCTGC------------------------------------------------------------------------------------------------TT-TTAAGG-CTTAGTTTCCGAG---TCTGAAATAAGTCCC-AAGTATA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6551 61 + 26550 GTTGAGGGGTTAATTGG------------------------------------------------------------------------------------------------TTCTTAAGG-CTTAATTTGATAG---TCTTAAATAAGTCCC-AAGTATA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3113 61 - 57811 GCTGAGGGGTTGACTGC------------------------------------------------------------------------------------------------TT-TTAAAGACTTAGTTTCCTAG---CCTGACATAAGTCCC-AAGTATA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s dipOrd1.scaffold_79724 3005 32 + 3406 GTGGAGGAGCTGATTG-------------------------------------------------------------------------------------------------TGGTTATGG-TTTGTTT-------------------------------- i dipOrd1.scaffold_79724 C 0 N 0 s cavPor3.scaffold_248 214691 55 + 667635 GTTGAGGATGTGACTGC------------------------------------------------------------------------------------------------TTGTTAGGG-ATTAGCTTCTGAG---CAGAAAATAAATC---AAG---- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 715 158 - 11041 GCTGAGGCACTAACTGCCTTTTTTTTTTtttttttttgggtgctggggatgcattgtgcatgccaggcaagcactctaccaactgagctatatctccagcccAACTAACTGTGTTTTTAAGG-TTTAGCCTCTGAG---TATAAAATAACTCCCAAAGTAGA i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 659981 61 + 1032594 AATGAGGGGCTGACTGC------------------------------------------------------------------------------------------------TTTCTAAGG-CTTAGTTTCATAG---TATGAAGTATGTCCC-AAGCATA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64135359 58 - 94057673 -TTGA--GGATGAATAC------------------------------------------------------------------------------------------------TTCTTAAGG-CTTTGTTTCTTAG---TCTGACATAAGTCCC-AAATATA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73636 47 - 81011 -GTAAGGGGATGAATGC------------------------------------------------------------------------------------------------TGGGGAAGG-CCGTTTCCC----------------AGTCCC-AGGTAGA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179290 47 + 42029645 -TTGAGGGGATGAATGC------------------------------------------------------------------------------------------------TTTGGAAGC-CTGTATCTC----------------AGTCCC-AAGTATG i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29955942 48 - 76506943 -TTGAGGGAACTAATGC------------------------------------------------------------------------------------------------CTTTTAATG-TTTAGTTTCCTAG---TATG-----ACT--------GCA i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 97051 60 - 3408981 GCTGAGGGTCAGGCTGC------------------------------------------------------------------------------------------------TTTTTAA-A-CTTAGTTTCTTAG---TCTGAGAGAAGTGCC-AAGTAAA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21792 61 + 154172 GTTGAAGGGTTTCCTGC------------------------------------------------------------------------------------------------TTTTTAAGG-CTTAGTTTCCTAG---TATGAAATGAATCCC-AAGTATA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 10337 61 + 12755 GTTGAATGGTTTCCTGC------------------------------------------------------------------------------------------------TTTTTAAGG-CTCAGTTTCCTAG---TGTGAAATAAGTCCA-AAGTATA i choHof1.scaffold_59997 C 0 I 993 s oryLat2.chr17 11714186 51 + 31848461 --------GTTGCAAGG------------------------------------------------------------------------------------------------TT--GGAAG-CTATGTTGTTAAA---TGAAAATCAAACtga-aagggta i oryLat2.chr17 I 95 C 0 s danRer6.chr4 43785616 44 - 71658100 ----------------a------------------------------------------------------------------------------------------------tc----tgt-ctaaatcttaaaaaatttaaacacaaataag-aaagaaa i danRer6.chr4 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I a score=61044.000000 s hg19.chrUn_gl000223 49264 67 + 180455 ATAACTA---------------TCTTCTAGGT------AT------TG------CAAGGAAATGCTAAAAACAGAAACAGGAAACTGACTGGAGATTA----AG s rheMac2.chr11 187066 67 - 134511895 ATAACAA---------------TCTTCTAGGT------AT------TG------CAAGGAACTACTCAAAACAGAAACAGGAAACTGACTGGAGATTA----AG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214283 67 - 136387465 ATAACTA---------------TCTTCTAGGT------AT------TG------CAAGGAAATGCTAAAAACTGAAACAGGAAACTGACTGGAGATTA----AG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176513 67 - 135371336 ATAACTA---------------TCTTCTAGGT------AT------TG------CAAGGAAATGCTAAAAACAGAAACAGGAAACTGACTGGAGATTA----AG i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6612 73 + 26550 ATGCCTA---------------TCTTCTAGAT------AT------TGAAAAATAAAAGAAATGCTGAAAACAGAAATAGGAA----ATTATAGATTAAGTCAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3174 67 - 57811 ATGCCTA---------------CCTCCTAGGT------AC------TGAACAAAAAAAGAAATGTTGACAACAGGAACAAT------ATGATAGAATG----AA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214746 51 + 667635 -----TA---------------TCTTCCACAT------AT------TGAAAACAAGCAGAAAC-TTGGCTGTGGGT----AAATCTT----------------G i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 873 60 - 11041 ATGCTTA---------------CTCCCTAGGT------AC------TGAAAAATATAGGAAGCAGTGAAAATAGAA----CAAACCTAC-------------AG i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 660042 69 + 1032594 ATG--TC---------------TCCTTTAGGT------AC------TGAAAAACAGGAGAAATGCTGAAAATGGGAACAGAAAACTGGCTGTAG--TA----AG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29955990 73 - 76506943 ATGTCTA---------------ACCTCTAGGT------AT------TGAAAAACACTTTAAACACTGTAAACAAGAACAGAAAGCAGACAGTAGATTA----AG i bosTau4.chr17 C 0 N 0 s equCab2.chr8 64135417 73 - 94057673 ATGTCTA---------------TCTTCTAGGT------AT------CAAAAAATAAAAGAAATGATGTAAACAGAAACAGGAAACAGACAGTAGATTA----AG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73683 79 - 81011 AGGTCTA---------------TCCTCTAGGT------ACTGGGGAAAAAAAGAAAATAAAATGCTATAAATAGGAATGACATACAGGCAGTATATTA----TG i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179337 77 + 42029645 AGATCTA---------------TCCTCTAGGT------AT--GGGGAGGAAAAAAAAGAAAATGCTATAAACAGGAATAAGATACAGGCAGTATATTA----AG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_138872 4350 52 - 6560 AA----A---------------TATTCTAGCC------AA-----------------AAAAATGTTG-GAATAGTGAAATAAAGCTGACAAGAAA--------- i myoLuc1.scaffold_138872 N 0 N 0 s loxAfr3.scaffold_113 97111 59 - 3408981 ATGCCTA---------------TTCTCTAGGT------AA------TGAAAACT-----AAATGCTGA------AAACAGGTTACTGAC---AGATTA----AA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 21853 73 + 154172 ATGCTTA---------------TCCTCTAGGT------AC------TGAAAAATAAAAGAAATACTGAAAACACAAACAGGGAACTAACAGTAGATTA----AA i dasNov2.scaffold_7587 C 0 C 0 s oryLat2.chr17 11714237 68 + 31848461 ataattggcataaatagataaatgatcaaagttgaccgaa-------aataaagtaaaaacagagcaataacaaa----------------------------- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43785660 47 - 71658100 atatttg---------------TGTCTTGAGT------AA-------AAAAAAAaaaaaaaagagtgaactcaaa----------------------------- i danRer6.chr4 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I a score=53075.000000 s hg19.chrUn_gl000223 49331 33 + 180455 TCATCTTTGGTTGTTGACAAA----------------------------TAT--GTTTATTAA s rheMac2.chr11 187133 33 - 134511895 TCACCTTTGGTTGTTGACAAC----------------------------TAT--GTTTATTAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214350 33 - 136387465 TCACCTTTGGTTGTTGACAAA----------------------------TAT--GTTTATTAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176580 33 - 135371336 TCATCTTTGGTTGTTGACAAA----------------------------TAT--GTTTATTAA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6685 35 + 26550 TCACCTTTGGGTACTGACAAA----------------------------TATAAGTCTGTCAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3241 31 - 57811 TCATCTTTG----TTTTCAAA----------------------------TATAAATTTATGAA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 214797 26 + 667635 TCA-----GACTGTTAACAAA----------------------------CA----CTTATCAA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 933 35 - 11041 TCACCTTTGGCTCTTGCCAGA----------------------------CATGAGTTTATCAA i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 660111 35 + 1032594 ACACCTCTGGTTGCTAACAAA----------------------------TATACATTTATTAA i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_90878 15277 27 + 27885 TAGTCTTGAGTT--------A----------------------------CAAAATTTTGCAAA i turTru1.scaffold_90878 N 0 C 0 s bosTau4.chr17 29797518 27 - 76506943 CAGCTTTGAGTT--------T----------------------------CAAAATTTTGTACA i bosTau4.chr17 N 0 C 0 s equCab2.chr8 64135490 35 - 94057673 TTACCTTTGGTTGCTGTCAAA----------------------------CTGAAGTTTATAAA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73762 35 - 81011 TCACCTGTGATTGTGGTCAAA----------------------------TATAAGTTTATAAA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179414 35 + 42029645 TCACCTCTGGTTCCTGTCAAA----------------------------TAAAAGCTAATAAA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 97170 61 - 3408981 TCACCTTTAGTTGTTAAAAggaaaccctggtggcatagtggttaagtgctat--ggctgctaa i loxAfr3.scaffold_113 C 0 I 114 s dasNov2.scaffold_7587 21926 33 + 154172 TCATCTTTGGTTGTGTACAAA----------------------------TAT--GTTTGTCAA i dasNov2.scaffold_7587 C 0 I 2 s oryLat2.chr17 11714305 18 + 31848461 ----------------aaaaa----------------------------tatatatttttaa- i oryLat2.chr17 C 0 I 16 s danRer6.chr4 43785707 23 - 71658100 -----------tgcagaaaaa----------------------------catcaagtcttta- i danRer6.chr4 C 0 C 0 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I a score=-73283.000000 s hg19.chrUn_gl000223 49364 34 + 180455 AT-----------GGG----GAATA---TGAAAAACACATGAA----------AAGCAAAGA s rheMac2.chr11 187166 44 - 134511895 AT-----------GGA----GAATG---TAAAAAACACATGAAAAGCAATGAAAAGCAAAGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214383 44 - 136387465 AT-----------GGG----GAATG---TGAAAAACACATGAAAAGCAATGAGAAGCAAAGA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176613 34 - 135371336 AT-----------GGG----GAATG---TGAAAAACACATGAA----------AAGCAAAGA i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6720 48 + 26550 ATAG-------AAAGA----GAATG---TGAATAATACATGAAAAGCAATGAAGAACACACA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 3272 38 - 57811 GT-----------GGGTACAGAATG---TGAGAACAAAAGGGG----------TAATGAAGA i tupBel1.scaffold_103331.1-57811 C 0 I 5857 s cavPor3.scaffold_248 214823 29 + 667635 AG-------------G----ATATA---AAAC---TGCATAAT----------GAGCAATGA i cavPor3.scaffold_248 C 0 I 10 s speTri1.scaffold_84809 968 30 - 11041 AG------------AA----AAATG---TGAA---TGcatgaa----------gatcaagga i speTri1.scaffold_84809 C 0 I 5187 s oryCun2.chrUn0106 660146 32 + 1032594 AG-------------A----GAATG---TGAAAAGTACATGAA----------GAATGAGGA i oryCun2.chrUn0106 C 0 I 7 s turTru1.scaffold_90878 15304 41 + 27885 ATGCCTTCTTTAGAAA----GCAAA---AGAGAAATG--------------AGCAAAACAGA i turTru1.scaffold_90878 C 0 N 0 s bosTau4.chr17 29797545 28 - 76506943 ATAGCTTCTTTGGAAA----GCACA---TGGAggg--------------------------- i bosTau4.chr17 C 0 N 0 s equCab2.chr8 64135525 35 - 94057673 ATGG-------GGAGA----GAATG---TGAAAAATAC-------------AAGAACAATGA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73797 47 - 81011 ATG--------CAAGA----GAATG---TAAAAAATATATCAAGAGCAACGAGGAACAAAGA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179449 48 + 42029645 ATGA-------AAAGA----AAATG---TAAAAAATACATCAAGAGCAAGGAGGAACAAAGA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 97345 36 - 3408981 -----------ggGGG----GGTTG---TTAAAAATACCTAAG--------AGCAATAACGA i loxAfr3.scaffold_113 I 114 I 6 s dasNov2.scaffold_7587 21961 29 + 154172 -----------GGGGA----GAGAA---TGAAAAATACATGAA--------AGCA------- i dasNov2.scaffold_7587 I 2 C 0 s oryLat2.chr17 11714339 28 + 31848461 ---------GTCAgga----acaag--caaaaaaaaaccaaaa------------------- i oryLat2.chr17 I 16 N 0 s danRer6.chr4 43785730 30 - 71658100 ---------ttgagga----gtgagtcctggaaaaagcaaaaa------------------- i danRer6.chr4 C 0 I 12 e gorGor1.Supercontig_0030964 2975 898 + 8399 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I a score=131489.000000 s hg19.chrUn_gl000223 49398 37 + 180455 AAAAAGGTTAGAAGAAGCTTTGACCCAATGTTTTGAG s rheMac2.chr11 187210 37 - 134511895 AAAAAGGTTGGAAGAAGCTTTGACCCAATGTTTTGAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214427 37 - 136387465 AAAAAGGTTAGAAGAAGCTTTGACCCAATGTTTTGAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176647 37 - 135371336 AAAAAGGTTAGAAGAAGCTTTGACCCAATGTTTTGAG i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6768 37 + 26550 AAGGAGGTTGTAAAAAGGACTCAGCCAATGTTCTGAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s cavPor3.scaffold_248 214862 37 + 667635 AAGGAGGCAGGAGGCGGCACTGGTCCAAGGTTCTAGG i cavPor3.scaffold_248 I 10 I 2213 s oryCun2.chrUn0106 660185 37 + 1032594 AAGGAGGCTGGATAAAGCCTTAATTCAGTGTTCTAAG i oryCun2.chrUn0106 I 7 C 0 s equCab2.chr8 64135560 37 - 94057673 AAGGAGGTTGGAAGAAGCTTTGAGCCAATGTCCTGAG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 73844 37 - 81011 AAGGAGGTTGGAAGAAGCACTGATCCAATATTGTGAG i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179497 37 + 42029645 AAGGAGGGTGGAAGAAGTACTGATCCGATATTCTGAG i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 97387 37 - 3408981 AAGAAGGTTGGAAGAAGCATTAATCCAATGTTCCAAG i loxAfr3.scaffold_113 I 6 C 0 s danRer6.chr4 43785772 27 - 71658100 ----------gggtgtgcactgagggagtgccatggg i danRer6.chr4 I 12 C 0 s dasNov2.scaffold_7587 21990 26 + 154172 -----------AAGAAGCATCGATCCAATGTTCTGAG i dasNov2.scaffold_7587 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I a score=68919.000000 s hg19.chrUn_gl000223 49435 44 + 180455 TAattaattcactc-------aatactttctgag--tatacact-atgc-ccagg s rheMac2.chr11 187247 44 - 134511895 TAattaattcactc-------aatactttctgag--tatatact-atgc-ccagg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 214464 44 - 136387465 TAattaattcactc-------aatactttctgag--tatatact-atgc-ccagg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176684 44 - 135371336 TAattaattcattc-------aatactttctgag--tatatact-atgc-ccagg i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 6805 47 + 26550 GAGttaattcacac-------agtccttactgtgcacacacact-atgctccagg i otoGar1.scaffold_101698.1-26550 C 0 C 0 s oryCun2.chrUn0106 660222 45 + 1032594 AAATTAGTTCACTT-------GATAGCTACTGAG--TATATACCAATTT-CCAGA i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3179534 44 + 42029645 GAGCTGATTTCATT-------CATGCCTAATAAG--GATATACT-GTGC-TCTGG i canFam2.chr26 C 0 I 31 s felCat3.scaffold_141210 73881 44 - 81011 GAAATGATTTCCTC-------AACACCTACTGAG--TACACACT-GTGC-CCCAG i felCat3.scaffold_141210 C 0 I 1 s equCab2.chr8 64135597 43 - 94057673 GAGtt-atttactc-------aatacctactgag--tacacacc-atgt-tccag i equCab2.chr8 C 0 I 1 s loxAfr3.scaffold_113 97424 51 - 3408981 GAATTAATTCACTCATTCAGTAATACCCACTGCA--TACCTACC-ATGT-TCCAG i loxAfr3.scaffold_113 C 0 I 1 s dasNov2.scaffold_7587 22016 51 + 154172 GGATAAattcactcactcagcaatacctactgag--tatctatt-aggt-tccag i dasNov2.scaffold_7587 C 0 I 1 s danRer6.chr4 43785799 28 - 71658100 -gaaaaaacaacca-------gacactcaatcac--ta----------------- i danRer6.chr4 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I e cavPor3.scaffold_248 214899 2213 + 667635 I a score=-28543.000000 s hg19.chrUn_gl000223 49479 45 + 180455 t-agtgtgtaaggtac----tagagacaca------------agag-----aaaaaata-----agttcctg s dasNov2.scaffold_7587 22068 33 + 154172 -caacatgcgaggcac----tggagacaca------------caag-----agaa----------------- i dasNov2.scaffold_7587 I 1 I 2 s loxAfr3.scaffold_113 97476 11 - 3408981 -cagtgtgtaag------------------------------------------------------------ i loxAfr3.scaffold_113 I 1 I 1049 s equCab2.chr8 64135641 34 - 94057673 -cagtgtgtggggtgc----tggagacaca------------agag-----aacaa---------------- i equCab2.chr8 I 1 I 242 s oryCun2.chrUn0106 660267 32 + 1032594 TAAGTTTATGAAATAT----TGGAGACAAA------------AGAA-----AA------------------- i oryCun2.chrUn0106 C 0 I 4511 s otoGar1.scaffold_101698.1-26550 6852 35 + 26550 a-agtatgtgagg-ac----cggagacata------------agag-----gaaaaat-------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s panTro2.chr12 176728 45 - 135371336 t-attgtgtaaggtac----tagagacaca------------agag-----aaaaaata-----agttcctg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 214508 45 - 136387465 t-agtgtgtgaggtac----tagagacaca------------agag-----aaaaaata-----agttcctg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 187291 38 - 134511895 t-agtgtgtgaggta-----tagagacaca------------aaag-----aaaaaata-----ag------ i rheMac2.chr11 C 0 I 4 s ornAna1.Contig39192 4778 52 - 4995 ----tgtactaagcgc----ttgggatgaa------------caagtcggcaacagatagagacagtccctg i ornAna1.Contig39192 N 0 N 0 s felCat3.scaffold_141210 73926 42 - 81011 --------TGGAGCACATATCGCAAGCAAG------------AGAC-----AGGAAACA-----AGCCCCTG i felCat3.scaffold_141210 I 1 I 15 s danRer6.chr4 43785827 41 - 71658100 ---------gtggtcc----tggaaacaaatacagggtgagtaaca-----aaataata------------- i danRer6.chr4 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I e cavPor3.scaffold_248 214899 2213 + 667635 I e canFam2.chr26 3179578 31 + 42029645 I a score=21533.000000 s hg19.chrUn_gl000223 49524 41 + 180455 taggccaggagcggtggctcacacctgtaatc-ccagcactt s tarSyr1.scaffold_69285 5776 40 + 10315 TCggccaggtttggtagctta-gcctgtaatc-ccagcactt i tarSyr1.scaffold_69285 N 0 C 0 s panTro2.chr12 176773 41 - 135371336 taggccaggagcggtggctcacgcctgtaatc-ccagcactt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 214553 41 - 136387465 taggccgggagtggtggctcacacctgtaatc-ccagcactt i ponAbe2.chr12 C 0 C 0 s micMur1.scaffold_5347 85199 38 - 93170 ---gccatacgtggtggctcatgcctataatc-ctagcagtc i micMur1.scaffold_5347 N 0 N 0 s danRer6.chr4 43785868 25 - 71658100 -----------------tgcacacaaatgatcgataacatac i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 22101 2 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e felCat3.scaffold_141210 73968 15 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 6887 0 + 26550 C e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I e rheMac2.chr11 187329 4 - 134511895 I e cavPor3.scaffold_248 214899 2213 + 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179578 31 + 42029645 I a score=18752.000000 s hg19.chrUn_gl000223 49565 87 + 180455 tgggaggccgaggcaggcagat--catgaggttgggagatcgagaccatcctgtctaacatggtgaaaccccgtctctactaaaaatac s tarSyr1.scaffold_69285 5816 63 + 10315 tgggagaccgaggcaagtggattgcctgagcactcaggtttgagactaaatggggcaacttgg-------------------------- i tarSyr1.scaffold_69285 C 0 I 23 s panTro2.chr12 176814 87 - 135371336 tgggaggccgaggcaggcagat--catgaggttgggagatcgagaccatcctgcctaacatggtgaaaccccgtctctactaaaaatac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 214594 87 - 136387465 tgggaggctgaggcgggcggat--catgaggtcgggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatac i ponAbe2.chr12 C 0 C 0 s danRer6.chr4 43785893 68 - 71658100 tgagacaaacatgaaggtaaat--gatgtggtatagaaaggaaaa---------aggaaatga-gagctcctgtaactgc--------- i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 22101 2 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e felCat3.scaffold_141210 73968 15 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 6887 0 + 26550 C e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I e rheMac2.chr11 187329 4 - 134511895 I e cavPor3.scaffold_248 214899 2213 + 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179578 31 + 42029645 I a score=28144.000000 s hg19.chrUn_gl000223 49652 91 + 180455 --aaaaaattagccgggtgtggtggtgggcgcctgtagtcccagct-----------actcaggaggctgaggcaggagaac-------ggtgtgaacccaggaggcggag s ponAbe2.chr12 214681 91 - 136387465 --aaaaaattagccaggcgtggtggttggcgcctgtagtcccagct-----------actcaggaggctgaggcaggagaat-------ggcgtgaacccaggaggcggag i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 176901 91 - 135371336 --aaaaaattagccgggtgtggtggtgggcgcctgtagtcccagct-----------actcaggaggctgaggcaggagaac-------ggtgtgaacccgggcggcggag i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_69285 5902 87 + 10315 --aaaaaattagttggtagttgt----agcacctgtactttcggct-----------acttggaaggctgaagtggaaggat-------tgccagagcctagtaggtcaat i tarSyr1.scaffold_69285 I 23 N 0 s cavPor3.scaffold_248 330945 83 - 667635 ------------ctgggcttggtggtacgcgcctgtaggcccatc------------actcaggaggccgaggcagaagaatcattatgggttcaagaccagcttgg---- i cavPor3.scaffold_248 n 2213 C 0 s danRer6.chr4 43785961 86 - 71658100 aaacaaaagcagatgaaaagag-----atcatctgtaacccagaactggagaagagagcaaaagagacagaggtggaaagag-------taataaaat------------- i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 22101 2 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e felCat3.scaffold_141210 73968 15 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 6887 0 + 26550 C e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I e rheMac2.chr11 187329 4 - 134511895 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179578 31 + 42029645 I a score=15284.000000 s hg19.chrUn_gl000223 49743 71 + 180455 attgc--agt-gagccgagatcacgccac------tgcactccagcctgggtaacagagcaagactccatctcaaaaaaa--------- s panTro2.chr12 176992 71 - 135371336 gttgc--agt-gagccaagatcacgccac------tgcactccagcctgggtaacagagcaagactccatctcgaaaaaa--------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 214772 71 - 136387465 gttgc--agt-gagccgagatcatgccac------tgcactccagcctgggtgacagagcaagactctgtctcaaaaaca--------- i ponAbe2.chr12 C 0 C 0 s cavPor3.scaffold_248 331028 59 - 667635 gctacaaagt-gagctaa--------------------aggccagcctaaattgtatagtgagaccctgtctcaaaaaaa--------- i cavPor3.scaffold_248 C 0 I 85902 s danRer6.chr4 43786047 85 - 71658100 atttt--attcgagtaaaagtactgttacttacaattttttttcacttaagta--agagtaaagttacatgtctacaaatctactcaag i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 22101 2 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e felCat3.scaffold_141210 73968 15 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 6887 0 + 26550 C e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr2 18077471 0 - 21591555 I e xenTro2.scaffold_677 205977 7158 + 553670 I e choHof1.scaffold_59997 10398 993 + 12755 I e rheMac2.chr11 187329 4 - 134511895 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179578 31 + 42029645 I a score=-101290.000000 s hg19.chrUn_gl000223 49814 249 + 180455 taaaaataaaaaataaaa----------aaataagttcctgtcattataaaat-ttatattgtaatggaaaag---------------------------ataatattttta-aaacaaca----aactat-acactg----tagta--------aatactaagaagaaaaTGAAAATATTTGAAAGAATGAT------TAG---------TCATTT-------CAAGCTT-------AAACAATGAGAAATAT-----TTTGTGTATTGTTTC-----------T-------------------TATTCTAAA-GTTTTA-------T----TTAAACTTGCCATATGCATCTTCA-CATTACTATTAAGAAA-GCCACTTA s panTro2.chr12 177063 253 - 135371336 taaaaataaaaaataaaa----------aaataagttcctgtcattataaaat-ttatattgtaatggaaaagat-----------------------aaataatattttta-aaacaaca----aactat-acactg----tagta--------aatactaagaagaaaaTGAAAATATTTGAAAGAATGAT------CAG---------TCATTT-------CAAGCTT-------AAACAATGAGAAATAT-----TTTGTGTATTGTTTC-----------T-------------------CATTCTAAA-GTTTTA-------T----TTAAACTTGCCATATGCATCTTCA-CATTACTATTAAGAAA-GCCACTTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 214843 237 - 136387465 taaaaataaaaaataaaa----------aaataagttcctgtcattataaaat-ttacattgtaatggaaaagat-----------------------aaataataTTTTTA-AAACAACA----AACTAT-ACACCG----TAGTA--------AATACTAAGAAGAAAATGAAAATATTTGAAAGAAT----------AG---------TCATTT-------CAAGTTT-------AAACAATGAGAAATAT-----TTTGTGTATTGTTTC-----------T-------------------CATTCTAAa-gtttta-------t----ttaaacttgccatatgcatcttca-cattactattaa------------- i ponAbe2.chr12 C 0 C 0 s tetNig2.chr15 4882030 257 - 7320470 TAAAAATATGGAAC------------------AA-----------AAGAGCgt-gtaaatggaaaaaaattaaat-----ttagtaAA----------AGTCATGTTTTGGTCAAATTTGA----AACTTA-ATATTTTAGTTAATGGAGGCTTTGGTTTT----Actagtgacacaca-cacaaatccttaT-----ATAT---------TCCTCATGTCGACCAACTTTTGGTGCTAAATAATGCTAATTAT-----TTTGGGTGTCGTTGC-----------T-------------------TTTGTGAAATGCTGGA-------T----TATA-GTAAACAAGTGTTTCTCAG-GTTTTCAAATTAGAAA--------- i tetNig2.chr15 n 0 n 0 s danRer6.chr4 43786132 273 - 71658100 taaaagtaaaaaat------------------aactcttctttttactcatga-gtaAATTTTTAATGAGTAACTATTTCTTAAAAAG----------GGACAAGATGATAT-AAATCTCC----AATTAG-TTGTTTTTATTTGTATAAGT---AACTTTAAAAACTAAAGACCAATA--ACAAAAAATAAT-----ATAA---------CTATTA-------CAAATATTTTTAC-AGATGATCCTATTCATACAAATTCTAATGCAACATC-----------T-------------------GTTGTGTTA-GCTAGA-------TAGGCTATATGCACATagacattt------aatttttagccaggcagccca---- i danRer6.chr4 C 0 C 0 s xenTro2.scaffold_760 448157 253 - 459086 ------------------ATCACCATTAACTTCAATACCCATAAACATTAACTATTACATACTAATAGGGAAAAT---------AAGTTACCCACCCAAAATTATAATGTGA-TAATCACA------TTATCACATTA----TAAT---------------------------------TTTGGGTGGGTAACTTATTTTGGTGATATTTATAATCC-------TAATTCT-------TAGACATGACATGTGA-----CTTTTGTCATGTGTC-----------TTTATAGATTGACTTATATGTGTTTTAAA-ATTATA-------T----TTTGCTTTGCCATGTGGCTTACTA-CATTGATAT---------------- i xenTro2.scaffold_760 n 7158 n 7158 s rheMac2.chr11 187333 218 - 134511895 ---------------------------------------tgttattataaaat-ttacattgtaatggaaaagat---------aaag----------aaataatattttta-aaaca--a----aactgt-acactg----tagta--------aatactaagaagaaaaTGAACATATTTGAAAGAAAAATTAG--GTAG---------TCATTT-------CAAGCTT-------AAAGAATGAGAAATAT-----TTTGCATATTGGTTC-----------T-------------------CATTCTAAa-gtttta-------t----ttaagcttgccatatgcatcttca-cgttgctattaa------------- i rheMac2.chr11 I 4 C 0 s otoGar1.scaffold_101698.1-26550 6887 222 + 26550 ----------------------------aaacaaggccttgccattatgaaat-ttatgttttaacagaaaaaat---------aaag----aac---atataatattagta-aacaacaa----aactat-ataCTGTACTTAGTA--------AATATT-GTAAGAAACTGAACAGATTTGAAAAAGTAATTGGCTAAAG---------TAATTT-------TAAGCTT-------AAAGTAT-AGAAACAT-----TTTATGTATT-TTTC-----------C-------------------CATTCTCAC-ATTTTC---AAGTT----TTAAATTTgccatgtac--------------------------------- i otoGar1.scaffold_101698.1-26550 C 0 I 410 s felCat3.scaffold_141210 73983 177 - 81011 ----------------------------------------------------------ATTGTAATGGAAAAGA------------------------AAACAA---------------------------------------------------------ATAGAGAAAATTAACAGG-TTGACAGAGTAAC-TACTAAAG---------CCATTA-------CAAGCTT-------AGAGAATGAGAAATCA-----TATTTGTCCCTTTTC-----------C-------------------CATTTTAAA-ATTTTCTGAACGTT----TTAAACTTACCAGAAACATTTTCAGCATTATCACCAAGAGA-GCCACTT- i felCat3.scaffold_141210 I 15 I 195 s canFam2.chr26 3179609 181 + 42029645 ---------------------------------------------aatggagc-ttacattctaatggagaaga------------------------AGAC-------------------------------------------------------------ATAGAAAATCAACAGGTTTGACAGAAGAAC-TACTAAAG---------CCATTA-------CAAGCTT-------GAAGAATGAGAAATCA-----TTTGTGAACTTTTCC-----------C-------------------CATTTTTAA-GTTTTCTGGAAGTT----TGAAACT--CCCACTGCATTTTCAACATCATAACCAAGAAA-GGCA---- i canFam2.chr26 I 31 I 107 s dasNov2.scaffold_7587 22103 267 + 154172 ---------------agac---------aggtaagcccttgccattatgaaac-ttgtgttctaataacaaagtt---------aaagaataaac---aaataatatggaag-aaaaaaaacctcaactat-acatag-----tgta--------actattacgaagaaaaTGAACAGATTTGATAAAGTAATTGGCTCAAG---------TAATTT-------CAAGATT-------GAAAGGTGGGAAAGAT-----GTCATATACTATTCCCCCAGGCAACAT-------------------CTTCTCAAA-GTTTTA-------T----TTAAATTTGCCAAACATATCTTCAACATT---AACAAGAAA-GTTACTT- i dasNov2.scaffold_7587 I 2 I 203 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 2975 898 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e choHof1.scaffold_59997 10398 993 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I a score=27133.000000 s hg19.chrUn_gl000223 50063 110 + 180455 -gatcctcccaccttaactgcctgagtagttgggacaacaggcatgcaccaccatg-cccagataa--tttttttttaatattttgtaaagatggggattccctatattgtcca s gorGor1.Supercontig_0030964 3873 112 + 8399 -gatcctcccaccttaactgcctgagtagttgggacnanaggcatgcaccaccatg-cccagataatttttttttttaatnttttgtaaagatggggattccctatattgtcca i gorGor1.Supercontig_0030964 I 898 C 0 s panTro2.chr12 177316 110 - 135371336 -gatcctcccaccttaactgcctgagtagttgggacaacaggcatgcaccaccatg-cccagataa--tttttttttaatattttgtaaagatggggattccctatattgtcca i panTro2.chr12 C 0 C 0 s danRer6.chr4 43786405 86 - 71658100 agggcttccgg--tgaactgtctttcaatttcaaa------------atcgtcacgtttcagatct--gatttctttaaaaatctgtga------------tcttcattgcctg i danRer6.chr4 C 0 I 36 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_760 448410 7158 - 459086 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=13208.000000 s hg19.chrUn_gl000223 50173 47 + 180455 gaatggtcttgaactcctggctttatgcagtctttccacctcagcct s panTro2.chr12 177426 47 - 135371336 gaatggtcttgaactcctggctttatgcagtctttccacctcagccc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 3985 47 + 8399 gaatggtcttgaactcctggctttatgcagtctttccacctcagcct i gorGor1.Supercontig_0030964 C 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e danRer6.chr4 43786491 36 - 71658100 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_760 448410 7158 - 459086 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=74607.000000 s hg19.chrUn_gl000223 50220 274 + 180455 cccaaagttctgggttacaggtgtgagccactgcgccgggccAATTTTggtttttcatggaggacttttagcaggtctcaaaagttttcttctaatagttttcttggtgttctatcattcataggtgttg----aatttatcaaactttttctatttcaattattacatt-----tttactttgttcaagtaatatt-------gtatcatattaaacaaacattgcattgtgaaaa--------ataccctgc-ttagtcatggtatgtaatcattcttatacctttttgtattcttt s gorGor1.Supercontig_0030964 4032 274 + 8399 cccaaagttctgggttacaggtgtgagcnactgtgccaggncAATTTTggtttttcatggaggacttttagcaggtctcaaaagttttcttctaatagttttcttggtgttctatcantcatnggtgttg----aatttancaaactttttctatttcaattattacatt-----tttactttgttcaagtaatatt-------gtatcatattaaacnaacattgcattgtcaaaa--------ataccctgc-ttagtcatggtatgtaatcattcttatanctttttgtattcttt i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 177473 274 - 135371336 cccaaagttctgggttacaggtgtgagccactgcgccgggccAATTTTggtttttcatggaggacttttagcaggtctcaaaagttttcttctaatagttttcttggtgttctatcattcataggtgttg----aatttatcaaactttttctatttcaattattacatt-----tttactttgttcaagtaatatt-------gtatcatattaaacaaacattgtattgtgaaaa--------ataccctgc-ttagtcatggtatgtaatcattcttatacctttttgtattcttt i panTro2.chr12 C 0 C 0 s danRer6.chr4 43786527 274 - 71658100 caagaagcactgcatta-------aagtctatttcccttgcca-----tgtctttcaaatatgactgtt-------------tgttttaccccagtattttggtttttgctagatcagatacagttgcggccaaaagttaacgagaattatttatattatttattaaatttcacatttgttgtttttcattaacgtctaccccaaccttaaatccaactgtcacagtaatgtaaaaacagtagttgtatcgagcattattcatgctacctattaaattacccaattaattgtatttttt i danRer6.chr4 I 36 N 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_760 448410 7158 - 459086 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=16758.000000 s hg19.chrUn_gl000223 50494 60 + 180455 ttttaaatatttctgagaatttctgtgtctaaatttaaataggatgttgtttcatagtca s panTro2.chr12 177747 60 - 135371336 ttttaaatatttctgagaatttctgtgtctaaatttaaataggatgttgtttcatagtca i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 4306 60 + 8399 ttttaaatatttctgagaatttctgtgtctaaatttaaataggatgttgtttcatagtca i gorGor1.Supercontig_0030964 C 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_760 448410 7158 - 459086 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=17139.000000 s hg19.chrUn_gl000223 50554 69 + 180455 tcttgtgattcttttgtctccttt------gggtattatggta------------------------------ttactggctaacagatgaattaagaaatatta s gorGor1.Supercontig_0030964 4366 69 + 8399 tcttgtgattcttttgtctccttt------gggtattatggta------------------------------ttactggctaanagatgaattaagaaatatta i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 177807 69 - 135371336 tcttgtgattcttttgtctccttt------gggtattatggta------------------------------ttactggctaacagatgaattaagaaatatta i panTro2.chr12 C 0 C 0 s danRer6.chr5 20331139 99 - 74451498 tcttgttatacatttattcattttcttttcggctttcatgccagctgacccagccagggctcgaacctgcaaccttcttgctgtgaggcga------caacacta i danRer6.chr5 N 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_760 448410 7158 - 459086 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=50072.000000 s hg19.chrUn_gl000223 50623 190 + 180455 ---------------cctcttctactgcttgaagttttt-----------gtgagaaattgatgtttttc-----attaagtgttgatgaaatgtacaacttaagcAGTTT-ATAACAACTATT-CTATCTAAAAAGATTTAA-------------------TTTTTTTGTTATGTGGATATAAGTATATTCTATTATATATATAATGAAA--------------CAATTCATAGGATGTTTTTTGAGTTTACTTT s panTro2.chr12 177876 190 - 135371336 ---------------cctcttctactgcttgaagttttt-----------gtgagaaattgatgtttttc-----attaagtgttgatgaaatgtacaacttaagcAGTTT-ATAACAGCTATT-CTATCTAAAAAGATTTAA-------------------TTTTTTTGTTATGTGGATATAAGTATATTCTATTATATATATAATGAAA--------------CAATTCATAGGATGTTTTTTGAGTTTACTTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 4435 190 + 8399 ---------------cctcttctactgcttgaagttttt-----------gtgagaaactgatgtttttc-----attaagtgttgatgaaatatacaacttaagcAGTTT-ATANCAGCTATT-CTATCTAAAAAGATCTAA-------------------TTTTTTTGTTATGTGGATATAAGTATATTCTATTATATATATAATGAAA--------------CAATTCATAGGATGTTTTTTGAGTTTACTTT i gorGor1.Supercontig_0030964 C 0 C 0 s xenTro2.scaffold_1682 35307 202 - 37806 ---------------CTCCGTGTACTGCTGGGGGTTTTGGACCTATACAAGTCACAAAGTTATACATTTTTGGTACTGAGGTGTTCGGGAGACAAATTAGTTACATTTTGT-GCATAAAATATT--TGTTTACTAAG---TAT-------------------TTTTTTTTTTACATTTAGAGGCCTATATCTTGTTGCAGAAGTGGAAATA--------------AAACTTCTAGCATTTTTCAGAAGCTTACGTT i xenTro2.scaffold_1682 n 7158 n 7158 s danRer6.chr5 20331238 240 - 74451498 cctactgcgccaccacgttgcctattgttatacagtgtc-----------ataaaaaacaaatgctgcta-----tattgatgtgcatagcgcacatctgacaaggagtctgacaacagccagtgctccacacagagatcttatcatttgacatactgtattttctttttttatatatatatatatatatatatatatatatatattcatagcgctttactttctccacatttatgatattttaggttttttattt i danRer6.chr5 C 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=33944.000000 s hg19.chrUn_gl000223 50813 121 + 180455 TGTAATCCATCTCTATCAGT-------ATTTTCTATTTCACAGTAT-GTCATGAACAATTATTCTAGGCACTT----GACATGGAATAATTTGAACAAATAGAGAATGAGTCCTATACTACAATCAATAAATA s gorGor1.Supercontig_0030964 4625 121 + 8399 TGTAATCCATCTCTATCAGT-------ATTTTCTATTTCATAGTAT-GTCATGAACAATTATTCTAGGCACTT----GACATTGAATAATTTGAACAAATAGAGAATGAGTCCTATACTACAATNAATAAATA i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 178066 121 - 135371336 TGTAATCCATCTCTATCAGT-------ATTTTCTATTTCATAGTAT-GTTATGAACAATTATTCTAGGCACTT----GACATGGAATAATTTGAACAAATAGAGAATGAGTCCTATACTACAATCAATAAATA i panTro2.chr12 C 0 C 0 s danRer6.chr5 20331478 127 - 74451498 tgaaataaatttgcaacaatttaaacaatatattttttcacattgtcattatgggctattgt-----gtgttttgaggaaataaattaatttaatccattttggaataagg-ctgtaacataaaaaattagga i danRer6.chr5 C 0 N 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_1682 35509 7158 - 37806 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=50404.000000 s hg19.chrUn_gl000223 50934 184 + 180455 ACTCAAAATTTTCTCCATTTTTAGGATGAAGAATATGAATATAGTTCTGTTACATAATATTTGTGTTTACTGTGTGAGACAAATGAGTTACTGAATGTAAAAATAATTAGTAAAACTGCCCTTTGATTTTGGAATTCATGAAGCAGGCAAATGCCCTACCTTCTATTTTTATCAATATTTAGAT s gorGor1.Supercontig_0030964 4746 184 + 8399 ACTCAAAATTTTCTCCATTTTTAGGATGAAGAATATGAATATAGTTCTGTTACATAATATTTGTGTTTACTGTGTGAGAGAAATGAGTTACTGAATGTAAAAATAATTAGTAAAACTGCCCTTTGATTTTGGAATNNATGAAGCAGGCAAATGCCCTACCTTCTATTTTTATCAATATTTAGAT i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 178187 184 - 135371336 ACTCAAAATTTTCTCCATTTTTAGGATGAAGAATATGAATATAGTTCTGTTACATAATATTTGTGTTTACTGTGTGAGACAAATGAGTTACTGAATGTAAAAATAATTAGTAAAACTGCCCTTTGATTTTGGAATTCATGAAGCAGGCAAATGCCCTACCTTCTATTTTTATCAATATTTAGAT i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_1682 35509 7158 - 37806 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=37306.000000 s hg19.chrUn_gl000223 51118 129 + 180455 AAGGCAGAAAAATAAATTTTAATAAGATACACAGAATAATCTTGTATTTGAAGAATGCTATGAAAA---AAGATAGTTT-------GGAGCAGTAG--TTAGTATTTGGCTCATATAATGTGTTAGGTACTATTCTAAGCC s xenTro2.scaffold_2942 5978 137 - 14700 AAAAAAGAAAAGAAAATTTTGATAAAATATACATTATTATTTAAGGTTCACTTAACCCCAGGAGAGTGTAGGAACGTTTTCTTTCCAGAAAAGTAGCACTAATAAT----ACACATGCAGCATTGTGTACTATGTGGCAAA i xenTro2.scaffold_2942 n 7158 C 0 s gorGor1.Supercontig_0030964 4930 129 + 8399 AAGGCANAAAAATAAATTTTAATAAGATATACAGAATAATCTTGTATTTGAAGAATGCTATGAAAA---AAGATAGTTT-------GGAGGAGTAG--TTAGTATTTGGCTCATATAATGTGTTAGGTACTATTCTAAGCC i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 178371 129 - 135371336 AAGGCAGAAAAATAAATTTTAATAAGATACACAGAATAATCTTATATTTGAAGAATGCTATGAAAA---AAGATAGTTT-------GGAGCAGTAG--TTAGTATTTGGCTCATATAATGTGTTAGGTACTATTCTAAGCC i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=38544.000000 s hg19.chrUn_gl000223 51247 208 + 180455 ATTAAACATTTGTATGCTTAATACCTAAGA--GTTTAAAGTGAAGAAATCAAAGATTCATTGAAAAAGaaaaattaaatttaaaaaaaattgtatttttaattgaaaaataatagttgtacatatctgtctacagtgtaa------------tattttgat-atatgttt----------------atgttgtaaaatga------------ttaaatcaagttaatGTTTATAACCT---------AAAAAAAAAAAA-----A s panTro2.chr12 178500 211 - 135371336 ATTAAACATTTGTATGCTTAATACCTAAGA--GTTTAAAGTGAAGAAATCAAAGATTCATTGAAAAAGAAAAATTAAATTT-AAAAAAAttgtatttttaattgaaaaataatagttgtacatatctgtctacagtgtaa------------tattttgat-atatgttt----------------atgttgtaaaatga------------ttaaatcaagttaatGTTTATAACCT---------AAAAAAAAAAAA-AAAGA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 5059 213 + 8399 ATTAAACATTTGTATGCTTAATACCTAAGA--GTTTAAAGTGAAGAAATCAAAGATTCATTGAAAAAGaaaaattaaatttaaaaaaaattGtatttttaattgaaaaataatagttgtatatatctgtctacagtgtaa------------tattttgat-atatgttt----------------atgttgtaaaatga------------ttaaatcaagttaatGTTTATAACCT---------aaaaaaaaaaaaaaaaaa i gorGor1.Supercontig_0030964 C 0 C 0 s xenTro2.scaffold_2942 6115 180 - 14700 ATTATGCA----------------------------AAATTTAAGAAATTAA----TCATTAAAATTGGAAGAGCTTTTACAATGAAGATT-TATCTGTAGCCT-GTACTTATACTTTTGTGAATGTGCCCGCAGACTCA------------AAAGTTATTAACAAAGTT----------------ACATAGTTAATGGACTTTGGGCTTTTTTCAACCCAGTttaagttcaaaccct---------caaa-------------- i xenTro2.scaffold_2942 C 0 C 0 s danRer6.chr5 71468940 228 + 74451498 ttcacacattcgttcaatgacaacttgtggctggctaaattg-------------tttatggtactttgaatattcagtctgaaatcacatacaaatatgacttgaaaacgacatatttatctgactgtaaacaactttagtcaatcgctgctaatatgat-ctgagtattcagaatttgcaaagaatgctgtag-----------------tgaaattatattaaagtttaaagtctgattgtatgaatacaaaaaca------ i danRer6.chr5 N 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 97487 1049 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 10398 993 + 12755 I e ponAbe2.chr12 215080 0 - 136387465 C e rheMac2.chr11 187551 0 - 134511895 C e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64135675 242 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=61272.000000 s hg19.chrUn_gl000223 51455 42 + 180455 AGGaaagccact--t-aatgca-acacattttcaaaaccatatcat s gorGor1.Supercontig_0030964 5272 42 + 8399 aagaaaGCCACT--T-AATGCa-acacattttcaaaaccatatcat i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 178711 42 - 135371336 AAGaaagccact--t-aatgca-acacattttcaaaaccatatcat i panTro2.chr12 C 0 C 0 s equCab2.chr8 64135917 39 - 94057673 aagaaagccact--t-catgta-acatattc---aaaacacatcat i equCab2.chr8 I 242 C 0 s rheMac2.chr11 187551 39 - 134511895 --gaaagccact--t--atgca-acacattttccaaaccatatcat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215080 40 - 136387465 --gaaagccatt--t-aatgca-acacattttcaaaaccatatcat i ponAbe2.chr12 C 0 C 0 s loxAfr3.scaffold_113 98536 40 - 3408981 aagaaagcaacc--t-tatgca-atgtattttcataa-cacatt-t i loxAfr3.scaffold_113 I 1049 C 0 s choHof1.scaffold_319161 17 40 - 1452 -GGAATTCTACT--t-tatgta-atacattttcaaaa-cacatcat i choHof1.scaffold_319161 n 993 C 0 s xenTro2.scaffold_2942 6295 45 - 14700 atgaaacccactgct-tatacacacataattatacagacctactat i xenTro2.scaffold_2942 C 0 C 0 s danRer6.chr5 71469168 41 + 74451498 cgtaactttacc--tcaATATG-ACGCGTTT--GAGACAACAACAT i danRer6.chr5 C 0 N 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e cavPor3.scaffold_248 331087 85902 - 667635 I e canFam2.chr26 3179790 107 + 42029645 I a score=264172.000000 s hg19.chrUn_gl000223 51497 178 + 180455 ct---------ttcatctaaactattcagg-cacagaa--c-tttaaaatccatgtgtactttcactaaaactatcccaagacccaagttcccattctaaaaataatctaatctgacag-tttgacagtcatttg--------ttacatagctctatttccattatcctcatgacataaccatttatactattataagtt s gorGor1.Supercontig_0030964 5314 178 + 8399 ct---------ttcatctaaactattcagg-cacagaa--c-tttaaaatccatgtgtactttcactaaaactatcccaagacccaagttcccattctaaaaataatctaatctgacag-tttgacagtcatttg--------ttacatagctctatttccattatcctcatgatataaccatttatactattataagtg i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 178753 178 - 135371336 ct---------ttcatctaaactattcagg-cacagaa--c-tttaaaatccatgtgtactttcactaaaactatcccaagacccaagttcccattctaaaaataatctaatctgacag-tttgacagtcatttg--------ttacatagctctatttccattatcctcatgatataaccatttatactattgtaagtg i panTro2.chr12 C 0 C 0 s equCab2.chr8 64135956 124 - 94057673 ct---------ttcatttaaaatgttcagg-tacaaaa--c-tctaaaatccatgtattctttcactgaaactatcccaagacac-agttctcattcttaaaa-----tatgccaacag-ctggagtgtcattta--------ttacatagc------------------------------------------------ i equCab2.chr8 C 0 I 57 s rheMac2.chr11 187590 173 - 134511895 ct---------ttcatctaaactattcagg-cacagaa--c-tttaaaatccatgtgtattttcactaaaaccatcccaagacccaagttcccattctaaaaa-----taatctgacag-tttgacagtcagttg--------ttatatagctctatttccattatcctcatgatataaccatttatactattataagtg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215120 173 - 136387465 ct---------ttcatctaaactattcagg-cacagaa--c-tttaaaatccatgtgtactttcactaaaactatcccaagacccaagttcccattctaaaaa-----taatctgacag-tttgacagtcatttg--------ttacatagctctatttccattatcctcatgatataaccatttatactattataagtg i ponAbe2.chr12 C 0 C 0 s loxAfr3.scaffold_113 98576 172 - 3408981 ct---------tttatctaaactgttcagg-tacagaa--cttttaaaatccacatgtgctgtcactgaaaatattccaagacacaagtatgcattcttaaac-----tattctgacag-ttcaattgtcattta--------ttatatagctctatttctatcatctttataacataaccacttatgttgtta--aggg i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_319161 57 145 - 1452 ca---------ttcacctaagcttttcagg-tacagaa--attttaaattccatgtgtgctctcaatgaaaatatcccaagacacaaatacccattcttcaaa-----tatttttatag-ttcaactgttattta--------ttatctcattctattttcattatcttca----------------------------- i choHof1.scaffold_319161 C 0 I 37 s xenTro2.scaffold_2942 6340 175 - 14700 atataccgatactaactttaaatcttaaggtcacaatagcc-tttgatat-----tatgcttgttcaagaaatcatccaag----------ccacttttaaat-----ggagttaatagactctgccatcacctggaagtgcattccacaacctcactgccctcaacatga----agaaccacctatactgcttcaagtt i xenTro2.scaffold_2942 C 0 n 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e cavPor3.scaffold_248 331087 85902 - 667635 I e canFam2.chr26 3179790 107 + 42029645 I a score=32853.000000 s hg19.chrUn_gl000223 51675 38 + 180455 aacttcaaaatatgtattttttgagacagggtcttgct s rheMac2.chr11 187763 38 - 134511895 aacttcaaaatatgtattttttgagacagggtcttgct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215293 38 - 136387465 aacttcaaaatatgtattttttgagacagggtcttgct i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 5492 38 + 8399 aacttcaaaatatgtattttttgagacagggtcttgct i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 178931 38 - 135371336 aacttcaaaaTATGTGtttcttgagacagggtcttgct i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_117968 2011 16 - 5517 atatataatatacaga---------------------- i tarSyr1.scaffold_117968 N 0 I 186 s loxAfr3.scaffold_113 98748 38 - 3408981 tcctttaaaaggtttgtcttttaataacGATTTTTGCT i loxAfr3.scaffold_113 C 0 I 18 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 202 37 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136080 57 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=117944.000000 s hg19.chrUn_gl000223 51713 144 + 180455 ctgtcgcccatattgaagtgcagtgttgtgatgcagcctcaaccccccaggctcccaggctcaagagatcctcctacataagcctcccaagcagccagaatacacaggtgtgcaaccac-atagctggctaattttgttgttgtt s panTro2.chr12 178969 144 - 135371336 ctgtcgcccatattgaagtgtagtgttgtgatgcagcctcaaccccccaggctcccaggctcaagagatcctcctacataagcctcccaagcagccagaatacacaggtgtgcaaccac-atagctggctaattttgttgttgtt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 5530 144 + 8399 ctgtcgcccatattgaagtgtagtgttgtgatgcagcctcaaccccccaggctcccaggctcaggagatcctcctacataagcctcccaagcagccagaatacacaggtgtgcaaccac-atagctggctaattttgttgttgtt i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 215331 144 - 136387465 ctgttgcccatattgaagtgaagtgttgtgatgcagcctcaacctcccaggctcccaggctcaagagatcttcctacataagcctcccaagcagccagaatacacaggtgtgcaaccac-atggctggctaattttgttgttgtt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 187801 133 - 134511895 ctgttgaccagattgaagcgtagtgttgtgatgcagcctcaacct---------cgaggctcaagagatcctcctacataagcctcccaagtagccagaatacacaggtgtacaaccactatggctggctaatt---ttgttgtt i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e tarSyr1.scaffold_117968 2027 186 - 5517 I e loxAfr3.scaffold_113 98786 18 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 202 37 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136080 57 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=93809.000000 s hg19.chrUn_gl000223 51857 89 + 180455 cttgttgagatggggtctccctatgttgtccaggctgctcttgaactcctgggctcaagcaattctcccactttaccctcccaaaccag s rheMac2.chr11 187934 89 - 134511895 cttgtagagatggggtctccctatgttgttcaggctgctcttgaactcctgggctcgagcaattctcccactttagcctcccaaaccag i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215475 89 - 136387465 cttgtacagatggggtctccctatgttgtccacgctgctcttgaactcccgggctcaagcaattctcccactttagcctcccaaaccag i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 5674 89 + 8399 cttgttgagatggggtctccctatgttgtccaggctgctcttgaactcctgggctcaagcaattctcccactttagcctcccaaaccag i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 179113 89 - 135371336 cttgttgagatggggtctccctatgttgtccaggctgctcttgaactcctgggctcaagtaattctcccactttaccctcccaaaCCAG i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_117968 2213 79 - 5517 attgt-gagatgagatctc-----gctgcccaggcgggtctcaaacccgcgggctcaggcaacccactcacctcagcctcccaaa---- i tarSyr1.scaffold_117968 I 186 N 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 98786 18 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 202 37 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136080 57 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=44974.000000 s hg19.chrUn_gl000223 51946 55 + 180455 taagagacttggtctctcccagagtgttggggtttcaggcatgagccaacatgct s panTro2.chr12 179202 55 - 135371336 TAAGAGACTTGGTCTCTCCCAGAGTGTTGGGGGTTCAGGCATAAGCCAATATGCT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 5763 55 + 8399 taagagacttggtctctcccagagtgttggggtttcagacatgagccaacatgct i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 215564 55 - 136387465 taagagacttggtctctcccagagtgttggggtttcaggcatgagccaacatgct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 188023 55 - 134511895 taagagacttggtctctcccagagtgttggggtttcaggcatgagtcaacatgct i rheMac2.chr11 C 0 C 0 s choHof1.scaffold_319161 239 11 - 1452 taaaaggcttg-------------------------------------------- i choHof1.scaffold_319161 I 37 C 0 e dasNov2.scaffold_7587 22370 203 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 74160 195 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 98786 18 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136080 57 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=354644.000000 s hg19.chrUn_gl000223 52001 161 + 180455 gggcccatttttcaataaaaatctacatttcaaatttttt---gtgaggttgtaccTAGAGGTAAGAAAGATAATCAGTAATGTG-AAAACA-TTCTACAAATTTAAATGTCAACTGAAGGTTATATATTTGTAgga---------------------------ttatatggtggaggtagaatcaacaagat s felCat3.scaffold_141210 74355 185 - 81011 -ggcttatttttcactaataatcaacacatagaatttttc---ctgagctcttacccacaggtatgaAAGCCAACCGGTAATGTG-AAAAACTTTTTAAAGACTTAAATGTCAATCAAGGGTAATAAATTTGCAGGAAACCCACAACTTACTGTTGGCCAT---ATCCattcaggaggtagagtcaacaagat i felCat3.scaffold_141210 I 195 C 0 s equCab2.chr8 64136137 182 - 94057673 aggcttatttttcactaacaatctatatttgaaatttttt---ctgaggtcatacacacaggtatgaAAGGTAATCAGTAATGCG-AAAAAC-TTTTAAGGACTTCAATGTTAATCAAGGGCAATAAATTTGCAGGAAACCCACAAGTGCCTATCGGCCAT---atatattttggaggtagaatcaac---at i equCab2.chr8 I 57 C 0 s panTro2.chr12 179257 161 - 135371336 GGGCCCATTTTTCAATAAAAATCTACATTTCAAATTTTTT---GTGAGGTTGTACCTAGAGGTAAGAAAGATAATCAGTAATGTG-AAAACA-TTCTACAAATTTAAATGTCAACTGAAGGTTATATATTTGTAgga---------------------------ttatatggtggaggtagaatcaacaagat i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 5818 161 + 8399 gggcccatttttcaataaaaatctacatttcaaatttttt---gtgaggttgtaccTAGAGGTAAGAAAGATAATCAGTAATGTG-AAAACA-TTCTACAAATTTAAATGTCAACTGAAGGTTATATATTTGTAGGA---------------------------TTATATGGTGGAGGTAGAATCAACAAGAT i gorGor1.Supercontig_0030964 C 0 I 22 s ponAbe2.chr12 215619 161 - 136387465 gggcccatttttcaataaaaatctacatttcaaaattttt---gtgaggttgtaccTAGAGGTAAGAAAGATAATCAGTAATGTG-AAAACA-TTCTACAAATTTAAATGTCAGCTGAAGGTAATACATGTGTAGGA---------------------------Ttatatggtggaggtagaatcaacaagat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 188078 161 - 134511895 gggcccatttttcaacaaaaatctatatttcaaatttttt---gtgaggttgtaccTAGAGGTAAGAAAGATAATCAGTAATGTG-AAAACA-TTCTACAAATTTAAATGTCAACTGAAGGTAATATATTTGTAGAA---------------------------Ttatatggtggaggtagaatcaataagat i rheMac2.chr11 C 0 C 0 s choHof1.scaffold_319161 250 166 - 1452 -------ttttttaaaaacaacctctacttgaaaattttttgtgtgaagtcatagccacagATATGAAGGAGAATCAGTAATATGAAAAACT-TCTTAAGGATTTAAATGTCAGTTGAGGGCAATA------------------AATCC-TGGTTGGTGATATATGatattttggaggtagaatcaacaaaat i choHof1.scaffold_319161 C 0 C 0 s dasNov2.scaffold_7587 22573 180 + 154172 -------TTTTTAAATAGCAATCTGTAATTGCAAATTTTT--TGTGAAGTCATACGCACAGATATAAA--AGAATCAGTAATAAGAAAAACT-TTTTGAGGATTTAAATATCAATTAAGGGCAATAAGTTCAGGGAAAATTCACAATTC-TGGTTGGCAATGTATGatattttagaggtagaatcaataagat i dasNov2.scaffold_7587 I 203 C 0 s loxAfr3.scaffold_113 98804 180 - 3408981 -------TCTTTTAATAACAATCTATGCTACAAATTTTTT----TGAGATTATAGCCATATGTGTGAAAGAGAATCAATAACGTG-AAAGCT-TTTTAAGAATTGAGATGTCAACTGAGGGCAGTGAGTTTGGGGAAAACCCACAACTCATGGTCGGCAATATATGatattctggaggtagaatcaacaagat i loxAfr3.scaffold_113 I 18 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I e canFam2.chr26 3179790 107 + 42029645 I a score=181181.000000 s hg19.chrUn_gl000223 52162 159 + 180455 ttgctgatgtatttggtatg-gagaaaata-aagggaaaa--agaatcaagaattacccttaggtttggagtttgaacaatttggtagattatggtgttta----tgaattgaggaagactgagggagaaa----tatgagggttaaaatcaagaccccattataaacata s rheMac2.chr11 188239 161 - 134511895 ttgctgatgtatttggtatg-gagaaaata-aaggaaaaaagagaatctagaattacccttaggtttggagtttgaacaatttggtagattatggtgttaa----tgcattaaggaaaactgagggagaaa----tacatgggttcaaatcaagactccactataaacata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215780 161 - 136387465 ttgctgatgtatttggtatg-gagaaaata-aagggaaaaagagaatcaagaattacccttaggtttggagtttgaacaatttggtagattatggtgttta----tgaattgaggaagactgagggagaaa----tatgagggttaaaatcaagactccattataaacata i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 179418 161 - 135371336 ttgctgatgtatttggtatg-gagaaaata-aagggaaaaagagaatcaagaattacccttaggtttggagtttgaacaatttggtagattatggtgttta----tgaattgaggaagactgagggagaaa----tatgagggttaaaatcaagaccccattataaacata i panTro2.chr12 C 0 C 0 s equCab2.chr8 64136319 117 - 94057673 ttgctgatggatttgacatg--aagggata-agggaaagcaaggaataaagaaagatgcctagatttggggtttga----------ggattacggtgttaattactgagttg-gaaagactgagggaaaaa---------------------------------------- i equCab2.chr8 C 0 I 34 s felCat3.scaffold_141210 74540 131 - 81011 ttgctgatggatttgacatgtaaaggaata-agggaaagcaaggaatcaagaatgaaccctaagactggggtttgagcaattcagtggattatggtgttcattactgagttg-agaagaatggaggaaaac----ga---------------------------------- i felCat3.scaffold_141210 C 0 C 0 s loxAfr3.scaffold_113 98984 155 - 3408981 ctgctgatggatatgatgtg--aggggaac-----gagggaaagaatcgaaagtgactgcag--------gtttg-gcagtccagtggactatggtcttaattactgagttcgggaaggctgagggagaaaaacgtttagaagttcaaatcaagactccattacagacaCA i loxAfr3.scaffold_113 C 0 I 77 s dasNov2.scaffold_7587 22753 110 + 154172 ttactgatggaattgatgtg--aggaaatagaggaaagggaaaaaatcaagaatg---------------gtttgaacaaggtggtggattatgatgttag----tgagttggggaaga----------------------------------------atgagggaaaaa i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_319161 416 128 - 1452 ttactgatggaattgatgtg--gggaaata-agggaaaggaaggaatcaagaatgactcctaggtttggtgtttgaaccatgtggtggattacggtgttaattattgggttggggaataaagaaggagaga---------------------------------------- i choHof1.scaffold_319161 C 0 n 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I e canFam2.chr26 3179790 107 + 42029645 I a score=22375.000000 s hg19.chrUn_gl000223 52321 58 + 180455 ttaattttgttttttgagacagggtattgccctgtcactcaggctggagtttagtggt s rheMac2.chr11 188400 58 - 134511895 ttaattctgttttttgagacagggtcttgccctgtcactcaggctggagtttagtggt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215941 58 - 136387465 ttaattttgttttttgagacagggtcttgccctgtcactcaggctgggttttagtggt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 179579 58 - 135371336 ttaattttgttttttgagacagggtattgccctgtcactcaggctggagtttagtggt i panTro2.chr12 C 0 C 0 s felCat3.scaffold_141210 74671 13 - 81011 ----------------------------------------agtctgggggtta----- i felCat3.scaffold_141210 C 0 I 20 s dasNov2.scaffold_7587 22863 13 + 154172 ---------------------------------------------gaagtttggagat i dasNov2.scaffold_7587 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99139 77 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 544 0 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136436 34 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=81928.000000 s hg19.chrUn_gl000223 52379 169 + 180455 gcaattatagctcactgcagccttgaa---ctcctgggctcaagtgatcctcccaactcagcctcctgagtagctggg-actacaggtgcgtgccaccatgctcaagataattttcagaattcttttgtagagatggggtctcaccatgttgctcaggctggtttcaaagtcc s rheMac2.chr11 188458 170 - 134511895 gcaattatagctcactgcagcctgaaaactctcttgggctcaactgatcctccc-actaagcc-actgagtagctgggaactaacagtgcatgccaccatgctcaagataatttttagaatt-ttttgtagagatgggatctcaccatgttgctcaggctggtttcaaactcc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 215999 169 - 136387465 gcaattatagctcactgcagccttgaa---ctcctgggctcaagtgatcctcccaactcagcctcctgagtagctggg-actacaggtgcatgccaccatgctcaagataatttttagaatttttttgtagagatggggtctcaccatgttgctcaggctggtttcaaactcc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 179637 169 - 135371336 gcaattatagctcactgcagccttgaa---ctcctgggctcaagtgatcctcccaactcagcctcctgagtagctggg-actacaggtgcgtgccaccatgctcaagataattttcagaattcttttgtagagatggggtctcaccatgttgctcaggctggtttcaaactcc i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 22876 0 + 154172 C e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e felCat3.scaffold_141210 74684 20 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99139 77 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 544 0 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136436 34 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=16076.000000 s hg19.chrUn_gl000223 52548 33 + 180455 taggctcaagtagtccttccacttcagcttccc s dasNov2.scaffold_7587 22876 15 + 154172 taaaatcaag----------actcc-------- i dasNov2.scaffold_7587 C 0 C 0 s rheMac2.chr11 188628 33 - 134511895 taggctcaagtagtccttccacttcagcttccc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 216168 33 - 136387465 taggctcaagtagtccttccacttcagcttccc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 179806 33 - 135371336 taggctcaagtagtccttccccttcagcttccc i panTro2.chr12 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e felCat3.scaffold_141210 74684 20 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99139 77 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 544 0 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136436 34 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=16356.000000 s hg19.chrUn_gl000223 52581 52 + 180455 aaattgctgg-gattacaggtgcaagcccccacAATTGACAC--TGTTAGGCCTA s panTro2.chr12 179839 52 - 135371336 aaattgctgg-gattacaggtgcaagcccccacAATTGACAC--AGTTAGGCCTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 216201 52 - 136387465 aaattgctgg-gattacaggtgcaagcccccacAACTGACAC--TGTTAGGCCTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 188661 54 - 134511895 aagttgctgg-gattacaggtgcaggcccccacAATTGACACTGTGTTAGGCCTA i rheMac2.chr11 C 0 C 0 s dasNov2.scaffold_7587 22891 7 + 154172 ------------aTTAAAa------------------------------------ i dasNov2.scaffold_7587 C 0 C 0 s danRer6.chr4 32007449 39 - 71658100 AAATTGCTGGTGAT----GGTGTAAGCTTTCACAA---------GGTAAGTG--- i danRer6.chr4 N 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e felCat3.scaffold_141210 74684 20 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99139 77 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_319161 544 0 - 1452 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64136436 34 - 94057673 I e canFam2.chr26 3179790 107 + 42029645 I a score=110137.000000 s hg19.chrUn_gl000223 52633 69 + 180455 ATATATTAATTTTGAGATGTCTAT--GACGTTTCAATAAAACGGT-----ATCAGAGAATACGGGTGCAGAAAATG s rheMac2.chr11 188715 69 - 134511895 ACATATTAATTTTGAGATGTATGT--GAAGTTTCGACAAAATGGT-----ATCAGAAAATATGGGTGCAGAAAATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 216253 69 - 136387465 ATATATTAATTTTGAGATGTATGT--GAAGTTTCAATAAAACGGT-----ATCAGAAAATATGGGTGCAGAAAATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 179891 69 - 135371336 ATATATTAATTTTGAGATGTCTAT--GACGTTTCAATAAAACGGT-----ATCAGAGAATATGGGTGCAGAAAATG i panTro2.chr12 C 0 C 0 s equCab2.chr8 64136470 70 - 94057673 atatgttaattttgagacgtacattacaactctgaataaagTCT------ATCAGGAAATGAGAGCGTAGAAAATG i equCab2.chr8 I 34 C 0 s felCat3.scaffold_141210 74704 71 - 81011 aaacattagctttgagatgTACCTTACAAGTTTGAATAAAGTGGT-----AACAGGAAACGTGAGAACAGAAAATG i felCat3.scaffold_141210 I 20 C 0 s canFam2.chr26 3179897 71 + 42029645 --ATATTAACTTTGAGATATAGGTTAGGAGTCTGAATAAAGTGTTACATAAACAG---ATGTGAGAGCAGAAAATG i canFam2.chr26 I 107 C 0 s choHof1.scaffold_59997 11391 71 + 12755 atctactagttttgagatatatatGAATAGATTGAATAAAATGGT-----ATCAGAGAATGTGAGAGTAGAAAAAA i choHof1.scaffold_59997 I 993 C 0 s dasNov2.scaffold_7587 22898 71 + 154172 acacactaattttgagatgtatatgaagagtttgaataaaatagt-----atcaaggaatgtgaaagcagaaaaag i dasNov2.scaffold_7587 C 0 C 0 s danRer6.chr4 32007488 64 - 71658100 GTGTATGAAAATATATATTTGTATT-GAAGATTTGAAATACAAAC-----AATATACAATACGGGTTGTG------ i danRer6.chr4 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99139 77 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=210257.000000 s hg19.chrUn_gl000223 52702 166 + 180455 AAACATCTATAAATTAAACTTA-CA--TTCATGTTATTTTAAATGTTATCAAATTATTGAACTATTAA-----TACTTAAGTAT----GTGTTTTAAATTTACA--TCTGCCTTCCCCCATCTTTA----CTTTTTTTCCTA--------TTAGAAAAAT-GAATTGCCTTATATTTGGT-CATTTGTGGTGTA s rheMac2.chr11 188784 167 - 134511895 AAACatttataaattaaactta-ca--ttcatattattttaaatgttattaaattattGAACTATTAA-----TACTTAAGTAT----GTGTTTTAAATTTACA--TCTGCCTTCCCCCATCTTTA----TTTTTTTTCCTA--------TTAGAAAAATGTAATTGCCTTATATTTGGT-CATTTGTGGtata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 216322 167 - 136387465 AAACATCTATAAATTAAACTTA-CA--TTCATGTTATTTTAAATGTTATCAAATTATTGAACTGTTAA-----TACTTAAGTAT----GTGTTTTAAATTTACA--TCTGCCTTCCCCCATCTTTA----TTTTTTTTCCTA--------TTAGAAAAATGGAATTGCCTTATATTTGGT-CATTTGTGGTGTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 179960 167 - 135371336 AAACATCTATAAATTAAACTTA-CA--TTCATGTTATTTTAAATGTTATCAAATTATTGAACTATTAA-----TACTTAAGTAT----GTGTTTTAAATTTACA--TCTGCCTTCCCCCATCTTTA----CTTTTTTTCCTA--------TTAGAAAAACGGAATTGCCTTATATTTGGT-CATTTGTGGTGTA i panTro2.chr12 C 0 C 0 s equCab2.chr8 64136540 147 - 94057673 GAAGATTTGTAAATTAAACTTA-TAATTTTATGTTACTTTAA--------ACATTACTAAAC---------------TAAGTAC----ACATTTGGAAATG-----TCTACCTTCTTCCAAATTTT----TAATTTTTCCCA--------TGAGAAAAATGAGATT-CTTTGTATTCGGT-CCTTTGTGGtatg i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 74775 151 - 81011 -AGTACTTACAAATTAAACTTG-TAATTTT--GTTACTTTAACTGT----ACACTGTTAAAC---------------TAAATAC----ACATTTTGAAATTGTA--TCTAACTTCTTCC-AACTTT----AATTTTTCCCCA--------TTAGAAAAATGGGTTTGCTTCATGTTTGAC-CATTTGTAGTATA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3179968 131 + 42029645 TAGTATT-----AATAAACTTA-CAACTTTACATTACTTTAAATGTG---ATATTGTTAGAC---------------TAAGGAC----ACGTTTGGAAATT----------------------TTT----ACTTTTTTCCCA--------CTAGGAAAATGGGACTGCTTTAGTTTTGGT-TATTTGTGGGATA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 99216 146 - 3408981 ---------------aaacata-tgatttcacatTACTTTAAACATTATCAC-TTACTAAAC---------------TGAGTAC----ATATTTGAAAATTTCA--TTGACATTTCCAAAATTTTA-TTTAATCTTTTACCA--------TTAGGAAAATATGACTGCTTTATATTTGGT-CATTTTTGGTACA i loxAfr3.scaffold_113 I 77 C 0 s dasNov2.scaffold_7587 22969 156 + 154172 gaccatctgtaaattaaacttactgattttatattac---------taccacattactaaag---------------taattaagtacagatttgacattttcatctctatgacctcaaaaattta-----atattTTCTCT--------TTAGAAAAATGGGATTGCTTAATATTTGGT-CATTTGTGGTATA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11462 155 + 12755 GAGTATTTGTAAATGAAACGTACTGACTTTATATTAT---------TACCACATTACTAAAG---------------TAATTAA----ACATTTGAAATTTTCA--TACATTACTCCAAAAATTTGTTTTTAACTTTTCTCA--------TTAGAAAAATGGGATTGCTTAGTATTTGGT-TATTTGTGGtata i choHof1.scaffold_59997 C 0 C 0 s danRer6.chr4 32007552 177 - 71658100 AATCTTTTGTTTAGTAAACACA--ACCCTTATAAAAACCCAAGCACT---GAATAAGGGTACTATTAATAATGTACTTAAGCAG----GTGTTTGCAGGTTGCA--TTAGGTTGTGACCACCCTTG----CATCGTTCTTTATATAATACTTAAAGAAAAGTACT--CCGTAAATTCAATATACTTATGGGGTA i danRer6.chr4 C 0 N 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=76291.000000 s hg19.chrUn_gl000223 52868 31 + 180455 TCCCAAAT-AGtcccactctctccatcacttt s rheMac2.chr11 188951 31 - 134511895 tcccaaat-agtcccactctctccatcacttt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 216489 31 - 136387465 TCCCAAAT-AGTCCCACTCTCTCCATCACTTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 180127 31 - 135371336 TCCCAAAT-AGtcccactctctccatcacttt i panTro2.chr12 C 0 C 0 s equCab2.chr8 64136687 31 - 94057673 tcccaaat-actccgactctcaccatcatttt i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 74926 31 - 81011 TCCCAGAT-ACCCCAACTCTCCCCACCACTTT i felCat3.scaffold_141210 C 0 I 206 s canFam2.chr26 3180099 31 + 42029645 TCCCAGAT-ACCTCAACTCTCCCCACCACTCT i canFam2.chr26 C 0 I 1 s loxAfr3.scaffold_113 99362 28 - 3408981 AATCAAAT----CCAATGCTCTCCATCACTTT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 23125 32 + 154172 GCCCAAATCACTCCAACTCTCTCCAGCATTTT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11617 32 + 12755 tcccaagtcaccccagttctctctggcacctt i choHof1.scaffold_59997 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=242838.000000 s hg19.chrUn_gl000223 52899 115 + 180455 ctctgctg-----taaactatcacattacctcaatgaaatatccttctaattggtttccctgcttccaattacattttctatttggcagtcagattaaactttcaaaattctaaatcaga--- s rheMac2.chr11 188982 120 - 134511895 ctctgctgtattctaaactatcacattatctcaatgaaataccctgctaattggtttccctgcttccaattacattttctacttggcagtgagaataaactttcacaattctaaatcaga--- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 216520 120 - 136387465 CTCTGCTGTATTCTAAACTATCACATTACCTCAATGAAATACCCTTCTAACTGGTTTCCCTGCTTCCAATTACATTTTCTATTTGGCAGTCAGATTAAACTTTCATAATTCTAAATCAGA--- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 180158 115 - 135371336 ctctgctg-----taaactatcacattacctcaatgaaatacccttctaattggtttccctgcttccaattacattttctatttggcagtcagattaaactttcaaaattctaaatcaga--- i panTro2.chr12 C 0 C 0 s equCab2.chr8 64136718 119 - 94057673 ctctgctgtagtttaatccatcgtattgtctcaatgaaacatccttctaattggtttccctgcctccaaggacattttccattctgtggtcagactga-cttttaaaaatgcaaatcaga--- i equCab2.chr8 C 0 I 6 s felCat3.scaffold_141210 75163 119 - 81011 CTCTGCTGTAGTTTAATCCATCTTAATATCTCAGTAAaatatccttccaactggtttccctgcttcctgtta-attttctactctgcagtcaggttaagctttttaaaatacaaatcaga--- i felCat3.scaffold_141210 I 206 I 6 s canFam2.chr26 3180131 120 + 42029645 CTCTGCTGTGCATTAATCTATCTTTTTATCTCAGTGAAATATCTTTCCAACTGATTTCCCTGTTTCCCGTAACATTTTCCATTCTGTGGATAGGTTAAACTTTTATAAATGTAAATCAGg--- i canFam2.chr26 I 1 I 180 s loxAfr3.scaffold_113 99390 122 - 3408981 TCTCTCTGTAGTCTATCCCTCCACATCATCTCCAATGaacacccttctaactggtactcctgc-tgcaattaaatcctccattcagtggccggactggacttttaaagatgtaaatcaaataa i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 23157 116 + 154172 CTATATTGTAGACTAATGCATTATATCATCTCGATGAAACATCTTTCTAATTGGTTTCTGTGCTTACAATTACATCCTCTATTAAGTGGTCAG-ATGAA-CTTGTAAAATGt-----atataa i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11649 120 + 12755 ctctgctgtagtctaatgtatcat---atcttgatgaaatatctttctaattggattctgtgcttccaattacatcctctcttcagtggccagaatgaatttttttaaatgtgaatcaggtaa i choHof1.scaffold_59997 C 0 C 0 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=146955.000000 s hg19.chrUn_gl000223 53014 69 + 180455 ---tttt-------------acttttcaaaatttcttgactcaattataagtcctttgtattgcctacaagttgag-tatggtc----ta s panTro2.chr12 180273 69 - 135371336 ---tttt-------------acttttcaaaatttcttgactcaattataagtcctttgtattgcctacaagttgag-tatgatc----ta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 216640 69 - 136387465 ---TTTT-------------ACTTTTCAAAATTTCTTGACTCAATTATAAGTCCTTTGTATTGCCTATAAGTTGAG-TATGATC----TA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 189102 70 - 134511895 ---tttt-------------acttttcaaaatttcttgactcgcttataactccattgtgttgcctacaagttgagatatgatc----ta i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 15 63 - 51117 ---TTTT-------------A---TTTAAAATTACT----TCAATTCTAACTCCTTGCTATCACCTACAAATTGAGGTATGATT----TA i micMur1.scaffold_9962 N 0 C 0 s equCab2.chr8 64136843 74 - 94057673 ---tact-------------tttacttaaaaTGATTTAAGCCAATCCAGATTCCTTTCTATTGCTGAGAAGCTGATGTACGATCGATGCA i equCab2.chr8 I 6 C 0 s felCat3.scaffold_141210 75288 70 - 81011 ---tatt-------------attatttaaaattgtttgaatcaattcaaactccttcctattgcttacaagttgatatatgatt----ta i felCat3.scaffold_141210 I 6 C 0 s canFam2.chr26 3180431 83 + 42029645 ---TTTTTTAAGCAGTGAACTTTATTTAAAATTACCGGAGTCAATCTAACTGCCTTCCTGCTGCTTATAAGTCAATGTATGACC----TA i canFam2.chr26 I 180 C 0 s loxAfr3.scaffold_113 99512 73 - 3408981 ttttact-------------tttacttaaaagtatctgagtaaacccaaacttgtctctattgcctacgatttgatacatgatc----ta i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 23273 73 + 154172 ttttact-------------tttatttaaaattattaGAATAAAGACAAATGCCTTTCCATTGCCTACAAGTTGATCTATGATC----CA i dasNov2.scaffold_7587 C 0 I 6 s choHof1.scaffold_59997 11769 73 + 12755 tattact-------------tttatttaaaattatttaaataaatgcaaactcctttccattgcctacaagttgatctatgatc----tA i choHof1.scaffold_59997 C 0 I 6 e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=149554.000000 s hg19.chrUn_gl000223 53083 131 + 180455 gttcccatgctctctccaacttatctgtat-ctctcaggcataccaacct-cagccacatgggcttccattccgtttctaa-aagtaactaaaccattttctgacttcacatattgttatttatcattcctttt s panTro2.chr12 180342 131 - 135371336 gttcccatgctctctccaacttatctgtat-ctctcaggcataccaacct-cagccacatgggcttccattccgtttctaa-aagtaactaaaccattttctgacttcacatattgttatttatcattcctttt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 216709 131 - 136387465 GTTCCCATGGTCTCTCCAACTTATCTGTGT-CTCTCAGGCATACTGACCT-CAGCCACATGGGCTTCCATTCCGTTTCTAA-AAGTAACTAAACCATTTTCTGACTTAACATATTCTTATTTATCATTCCTTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 189172 131 - 134511895 gttcccatactctctccaacttatctgcat-ctctcgggcatactgacct-cagccacatgggcttccattctgtttctaa-aagtaactaaaccattttctgacttaacatattcttatttgtcattcctttt i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 78 124 - 51117 GTTCCCACACTCTCTCCAGTGTCTCTATAC-CTTCCTGGTCCACTGATCT-CAGTCACATAGGCTT-------GTTTCTTA-AAGTTACCAAGCCTGTTCCTGACTTAACACATTCATTTTCATCATTCCTTTT i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64136917 118 - 94057673 GCCCCTGCACTCTCTCCA-----CCTCTAT-CTCCCAGGCACACTGACCG-TGACT-CACAGCCCTCCTTTCCATTTCT---CAGGCACTGAGCCCCTTCC-----TAATGCATTCATATCTGTCATTCCTTTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 75358 100 - 81011 gtttccgcacactccccaa----cccctat-ctccCTGAGG----------------CAAGGCCTTTCT-------------AAGTAACTAAGTCCCTTCCTGACTTAATGCATTCATATTTATCATTCCtttt i felCat3.scaffold_141210 C 0 I 418 s canFam2.chr26 3180514 114 + 42029645 GATCCCACACACTGCCCAG----CACACAGACACCCAAACA----------------CAAAGGCTTACTTTCTGCTTTCCTGTAGTCCCTAAACTTCTTCCTGACCTAATATATTCATATTTGTCAGTCCTTTA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 99585 114 - 3408981 gttccttcaatctctc---------------ct----ggcatactaacatccagccacatgagtttccttttcgttcctta-aagtcaggaagacttttcttgccttgaggccttcacatttgccattcctgta i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=61983.000000 s hg19.chrUn_gl000223 53214 65 + 180455 ggagacacttttccccA---------------TGCTCATTTCACATCTTTCATGTCTACAATTAGTTTTCCCATGTCATT s panTro2.chr12 180473 65 - 135371336 ggagacacttttcccTA---------------TGCTCATTTCACATCTTTCATGTCTACAATTAGTTTTCCCATGTCATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 216840 65 - 136387465 GGAGACACTTTTCCCCA---------------TGCTCACTTCACATCTTTCATGTCTACAATTAGTTTTCCCATGTCATT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 189303 65 - 134511895 ggagacactctttcccA---------------TGCTCATTTCACATCTTTCATGTCTACAATTAGTTTTCCCTTGTCTTT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 202 79 - 51117 TGAGATGTTTTCCCCTAATTCTTCACATAGCTTTACTATTTCACATTCCTCACATCTAGAATTGGCATCTTCATGTTGT- i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64137035 76 - 94057673 GGGGACACCTCCCCCCAGTTCTTCACATAGCCTTCTCACTT--CAGTCTTCATGTCCAGAACTGGCTTCTCCATGT--TA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3180628 56 + 42029645 GGGTACATTTTCCCCCAG---TTCACATAGCTCACTCAGTT--TGGTCTTCATGTCTAGA-------------------A i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 99699 79 - 3408981 -gggaggcttccccccagttcttcacatagcttgctcagtgcacattctttacgtctAGGGCTGGCTTCCTCATGTTACT i loxAfr3.scaffold_113 C 0 I 4 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e felCat3.scaffold_141210 75458 418 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=168850.000000 s hg19.chrUn_gl000223 53279 156 + 180455 CTCtgttatggactaaa----tgtg-------tctcctcaaaacttgtatattgaag-ctta---actc-tcagaatggctgtatttggagataggacctct-aagg----aagt----aagattaaatgaggtcataagggtaggaccctgatcaaatagggttattgtctttacaaaaa s panTro2.chr12 180538 156 - 135371336 CTCtgttatggactaaa----tgtg-------tctcctcaaaacttgtatattgaag-ctta---actc-tcagaatggctgtatttggagacaggacctct-aagg----aagt----aagattaaatgaggtcataagggtaggaccctgatcaaatagggttattgtctttacaaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 216905 156 - 136387465 CTCtgttatggactaaa----tgtg-------tctcctcaaaacttgtatattgaag-ctta---actc-tcagaatggctgtatttggagataggacctct-aagg----aagt----aaggttaaatgaggtcataagggtaggaccctgatcaaatagggttatcatctttacaaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 189368 153 - 134511895 CTCtgttatggactaaa----tgta-------tctcctcaaaaattgtacactgaag----a---actt-ccagaacggctgtatttggagataggacctct-aagg----aaat----aagattaaatgaggtcataagggtaggaccctgatcaaacagggttatcatctttacaaaaa i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 281 161 - 51117 -TCtgttacagactaaatgtttgtg-------tcttcacaaaattcatatgttgaatcccta---accc-tcagtatgac--tatttggagaaggaacctctaaagg----aagtaatcaaggttaaataaggtcataagggtgggaccctgatacaatgggattagtgac--tataaaaa i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64137111 168 - 94057673 CTCtgtcatggactgaacgtttgtgcccccccccccctcaaaattcctttgctgaagcccta---accc--caatttggctgtgtttggagatgtggtcttg-aaggaagtaatt----aaggttaaatgaggtcataagggtggggccctgatctgacaggattagtgtccttagaa--- i equCab2.chr8 C 0 I 78 s canFam2.chr26 3180684 171 + 42029645 CCCtgctgtggactgagaacttgtgcaccccacttccccaaacct-gtatgttgaagccctccctacccttctatgtggatatatttggaaatgggatcaca-aagg----aatt----aaggttaaatgagatcttatgggtggggccctgatccaaaaggattagcgtccctatcagaa i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e felCat3.scaffold_141210 75458 418 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99778 4 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=150491.000000 s hg19.chrUn_gl000223 53435 258 + 180455 tagatatgaggccaggcacactggcccacgtctgtaatctcagcactttgggaggctgaggcaggcagattacttgaaccctggagtttcagaggagcctggaccacacagtgaaactgtgcctgtac------aaaaaagaacctgttttt--------------------------------------aattagccaggtgtggtgctgcacacctgtggtcccagctgcttggggggatca------------cttgagcccaggaggttaaggatgcagtgacccatgattgtgccattgcactc---caggt- s panTro2.chr12 180694 258 - 135371336 tagatatgaggccaggcacactggcccacgtctgtaatctcagcactttgggaggctgaggcaggcagattacttgaaccctggagtttcagaggagcctggaccacacagtgaaactgtgcctgtac------aaaaaagaacctgttttt--------------------------------------aattagccaggtgtggtgctgcacacctgtggtcccagctgcttggggggatca------------cttgagcccaggaggttaaggatgcagtgacccatgattgtgccattgcactc---caggc- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 217061 257 - 136387465 tagatatgaggccaggcacactggcccacgtctgtaatctcagcactttgggaggctgaggcaggcagattacttgaaccctggagtttcagagcaggcttggccacacagtgaaactgtgtctgtac-------aaaaagaacctgttttt--------------------------------------aattagcgaggtgtggtggtgcacacctgtggtcccagctgcttgggaggatca------------cttgagcccaggaggtcaaggctgcagtgacccatgattgtgccattgcactc---caggc- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 189521 261 - 134511895 tagatatgaggccagg--cagtggcccacctctgtaatctcagcactttgggaggctgaggcagacagattacttgagtcccagagtttgagagcagcctgggcaacacagtgaaactgtgtctgtac-aaaaaaaaaaaaaacctgttttt--------------------------------------aattagctaggtgtggtgatgcacacctgtagtcccagatgcttgggaggctca------------cttgagcccaggaggtcaaggctgcagtgacccatgattgtgccactgcactc---caggc- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 442 287 - 51117 gagac-----------------------cccctgtaatcctagcactttgggaggccgagacgggtggattgctcaaggtcaggagttcgaaaccagcctg--------agcaagaccccgtctctaccaaaaatagaaagaaattaattggccaactaaagatatatatatatatatacacacacaaaaaattagccgggcatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcagtaggattgctgagcccaggagtttgaggttgctgtgagccaggctgacgccacggcactcactctagcc i micMur1.scaffold_9962 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e gorGor1.Supercontig_0030964 5979 22 + 8399 I e felCat3.scaffold_141210 75458 418 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99778 4 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64137279 78 - 94057673 I e canFam2.chr26 3180855 0 + 42029645 C a score=52181.000000 s hg19.chrUn_gl000223 53693 50 + 180455 ggggt----gagtgagaccctgtctcaaaaaaagaaaaagaa--aaaagaaacccc s micMur1.scaffold_9962 729 50 - 51117 tgggcaacaaagtgagactctgtctcaaaaaaaaaaaaaaaa--aaaaaaaa---- i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 189782 50 - 134511895 tgggt----gagtgagaccttgtctcgaaaaaggaaaaagaa--aaaagaaacccc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 217318 50 - 136387465 tgggt----gagtgtgaccctgtctcgaaaaaagaaaaagaa--aaaagaaacccc i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 6001 50 + 8399 GGGGT----GAGAGAGACCCTGTCTCAAAAAAAGAAAAAGAA--AAAAGAAACCCC i gorGor1.Supercontig_0030964 I 22 C 0 s panTro2.chr12 180952 50 - 135371336 ggggt----gagtgagaccctgtctcaaaaaaagaaaaagaa--aaaagaaacccc i panTro2.chr12 C 0 C 0 s felCat3.scaffold_141210 75876 46 - 81011 ----------ggtagggccctgatccaaaaagattagtatccttatcagaaacacc i felCat3.scaffold_141210 I 418 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99778 4 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64137279 78 - 94057673 I e canFam2.chr26 3180855 0 + 42029645 C a score=72296.000000 s hg19.chrUn_gl000223 53743 70 + 180455 aca--agagatctct-------------tctctctctctctctccatgtacacactgggaaaaggccatgtgaacacatagtgag s panTro2.chr12 181002 72 - 135371336 aca--agagatctct-----------tctctctctctctctctccatgtacacactgggaaaaggccatgtgaacacatagtgag i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 6051 73 + 8399 ACA--AGAGAtctct----------ctctctctctctctctctcCATGTACACACTGGGAAAAGgccatgtgaacacatagtgag i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 217368 73 - 136387465 aca--agagatatct----------ctctctctctctctctttccatgaacacaccaaggaaaggccatgtgaagacacagtgag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 189832 83 - 134511895 aca--agagatccatctatatctatctatctctttctctctctccatgtacacactggggaaaggccatgtgaacacatagtgag i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 779 75 - 51117 --a--agagacccca------agacaccacacactttctctctacatgcacacaccaaagaagggccatgtaaggacacattgaa i micMur1.scaffold_9962 C 0 C 0 s canFam2.chr26 3180855 69 + 42029645 acaccagagcaggcc----------tcaccccccaa-----ctccacgcaca-aatgaagaaaggccacgtgagggcaaaactgc i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 75922 69 - 81011 -----agagtactcc----------ttggcccctaatctacccacatgcatg-aatgaggaaaggccatattagggcagagctac i felCat3.scaffold_141210 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99778 4 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64137279 78 - 94057673 I a score=58755.000000 s hg19.chrUn_gl000223 53813 41 + 180455 agggtggctgtccacaag------------gcaggaagacagccctccccaga s panTro2.chr12 181074 41 - 135371336 agggtggctgtccacaag------------gcaggaagacagccctccccaga i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 6124 41 + 8399 agggtggctgtccacaag------------gcaggaagacagccctccncaga i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 217441 41 - 136387465 agggtggctgtccacaag------------gcaggaagagagccctccccaga i ponAbe2.chr12 C 0 I 1448 s rheMac2.chr11 189915 41 - 134511895 agggtggctcttcacaag------------gcaggaagagagccctccccaga i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 854 40 - 51117 aaggc-gctgtctacaag------------ccaggaagaaaggcatcatgaga i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64137357 39 - 94057673 aaggt--gggtctacaat------------ccaggaagacagacctcagcaga i equCab2.chr8 I 78 C 0 s felCat3.scaffold_141210 75991 34 - 81011 -------attgctacaag------------ccagcaaaacagctttcatcaga i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3180924 46 + 42029645 -------acggctacaaggctatctacacaccagcaagactatgttcaccagg i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99778 4 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=106409.000000 s hg19.chrUn_gl000223 53854 122 + 180455 aaaa-gatcatggtggtacct---tgatcttgggactttcca-tctccaaaactgagaaa------------------------------------taaatttctgttgtttaagctccccagaatatggtattttgttatggcagactgagcagactaaccc s canFam2.chr26 3180970 152 + 42029645 acct-aatcacacaagctcct---tgcccttggaccctccag-gctccagaagtatggcaaagctttctattgtttttttctttgttttgtttttaaagctttctgttgtttaccca------tctatgagattttgttatggcagcctacacagTGCCACAA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 76025 80 - 81011 acccaaatcacgcaggcacct---tgatcttgggacttccag-cctccaaaactgcggga-----------------------------------gtaacttcctg-----------------------------------agcagacta---------acac i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64137396 120 - 94057673 atct-gatcatgctgccgcct---tgatgttgga-cttccag-cctccagaacagggagg-----------------------------------gtcactttctgttgtttaacca--ccagtctgtagtatttcattacagcagcctgagcagactaatac i equCab2.chr8 C 0 C 0 s micMur1.scaffold_9962 894 125 - 51117 aact-gatcatggtagaaaccttgtgatctt-ggactttccagtctccagaattgggaaa------------------------------------aatcaatttgttatttaacacacccagtctatggtattttgttatggcagcctaagaagagtaaTAT i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 189956 121 - 134511895 aaac-aaccatgctggtacct---tgacctt-ggactttcca-tctccaaaactggaaaa------------------------------------ccaatttctgttgtttaagctccccagaatatgatattttgttatggcagactgagcagactaaccc i rheMac2.chr11 C 0 C 0 s panTro2.chr12 181115 122 - 135371336 aaaa-gatcatggtggtacct---tgatcttgggactttcca-tctccaaaactgataaa------------------------------------taaatttctgttgtttaagctccccagaatatggtattttgttatggcagactgagcagactaaccc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 6165 122 + 8399 aaaa-gatcatggtggtacct---tgatcttgggactttcca-tctccaaaactgagaaa------------------------------------taaatttctgttgtttaagctccccagaatatggtattttgtcatggcagactgagcagactaaccc i gorGor1.Supercontig_0030964 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e loxAfr3.scaffold_113 99778 4 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e ponAbe2.chr12 217482 1448 - 136387465 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=792262.000000 s hg19.chrUn_gl000223 53976 680 + 180455 attctct--------------catctaatt--tttctgtaataacacttagcag-gatctgaattttttcctgcttacttactaccctgttc--tttttttgtcct----ccagcaagtaaacactgtgttggcaggaaatatatatcgctaatg--ctctaatatacccatagtacctagcacagtaact---------taaaagaagtcaataaa--tattCTATTTTATCTGAA--------GTAGTCTAGATagaaaag----agcatcaggaccaaaactaccatccatagaaagccctgcttgcaag---actggcccctggctggcatctgagaacatgggtttcaggaacgtccctac-tatttcctaactgataa-------ttactatgccgag-ac-tgtatacaaacaatatgatc-------accacatg--------------------------------------------ttaggcagagaatacctacatgaccagctcccagtaaagaccttgggcactta-tctccaatggtccttcctgggcagaaacatcaaacacatgtgttactatatttttgctgcagagggat--agtaaac----tttgaccctta-------caggagggagggagctt-aggaagcctgcac-atgggttcttcgagactctgcctgtgcctttttcatttgtgatccagctg--tgtccttacagtgtcactgtagtaaatct--gtcataagtacaa--atatgctgagtcccgtgagtccttctagtga--ctctg--aacatag-g s gorGor1.Supercontig_0030964 6287 690 + 8399 attctct--------------catctaatttatttctgtaacaacacttagcag-gatctgaattttttcctgcttacttactaccctgttc--tttttttgtcct----ctagcaagtaaacactgtgttggcaggaaatatatatctctaatg--ctctaatatacccatagtacctagcacagtaacttaaaa---ataaaagaagtcaataaa--tattCTATTTTATCTGAA--------GTAGTCCGGATagaaaag----agcatcaggaccaaaactaccattcatagaaagccctgcttgcaag---actggcccctggctggcatctgagaacatgggtttcaggaatgtccctac-tatttcctaactgataa-------ttactatgccgag-ac-tgtatacaaacaatatgatc-------agcacatg--------------------------------------------ttaggcagagaatacctacatgaccagctcccagtaaagaccttgggtactta-tctctaatggtccttcctgggcagaaacatcaaacacatgtgttactatatttttgctgcagagggat--agtaaac----tttgaccctta-------caggagggagggagctt-aggaagcctgcac-acgggttcttcgagactctgcctgtgcctttttcatttgtgatccagctg--tgtccttacagtgtcactgtagtaaatctcagtcataagtacaa--atatgctgagtcccgtgagtccttctagtga--ctctg--aacatag-g i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 181237 690 - 135371336 attctct--------------catctaatttatttctgtaataacacttagcag-gatctgaattttttcctgcttacttactaccctgttc--tttttttgtcct----ctagcaagtaaacactgtgttggcaggaaatatatatctctaatg--ctctaatatacccatagtacctagcacagtaacttaaaa---ataaaagaagtcaataaa--tattCTATTTTATCTGAA--------GTAGTCTGGATagaaaag----agcatcaggaccaaaactaccatccatagaaagccctgcttgcaag---actggcccctggctggcatctgagaacatgggtttcaggaatgtccctac-tatttcctaactgataa-------ttactatgccgag-ac-tgtatacaaacaatatgatc-------agcacatg--------------------------------------------ttaggcagagaatacctacatgaccagctcccagtaaagaccttgggcactta-tctctaatggtccttcctgggcagaaacatcaaacacatgcgttactatatttttgctgcagagggat--agtaaac----tttgaccctta-------caggagggagggagctt-aggaagcctgcac-acgggttcttcgagactctgcctgtgcctttttcatttgtgatccagctg--tgtccttacagtgtcactgtagtaaatctcagtcataagtacaa--atatgctgagtcccgtgagtccttctagtga--ctctg--aacatag-g i panTro2.chr12 C 0 C 0 s rheMac2.chr11 190077 690 - 134511895 attctct--------------cacctaatttatttctgtaataacacttagcag-gatctgaattttttcctgcttacttactaccctgttc--tttttttgtcct----ctagcaagtaaacactatgtcagcaggaaatatatatctctaatg--ctctattatacccacagtacctagcacagtaacttaaaa---ataaaagaagtcaataaa--tactCTATTTTCTCTGAA--------GTAGTCtgtgtagaaaag----agcttcaggcccgaaactaccatccatagaaagtcctgtttgcaag---actggccctcggctggcatctgagaacatgggtttcaggaatgtccctac-tatttcctaactgataa-------ttactatgctaag-ac-tgtatacaaacagtatgatc-------agcacctg--------------------------------------------ttaggcagagaatacctataggaccagctcccagtaaagaccttgggcactta-tctctaatggtctttcctgggcagaaacatcaaacacacgtgttactatatttttgctgcagggggat--agtaaac----tttgaccctta-------cgggaaggagggagctt-aggacgcctgcaa-atgggttctttcagactctgcctgtgcctttttcacttgtgatccagctg--tgtccttatagtgccactgtaataaatcttagtcataagtacaa--atatgctgagtccagtgagtccttctagtga--ctctg--aacatgg-g i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 1019 715 - 51117 AATCTTT--------------CAcctaatttatttccataatagcatttatcag-ggcctagattttatcttggttatttgctactttgttcattttctttatcctcccactaaaaagtaagcactatgtgggcagaaa--atatttctctaatgttccctattgtgcccg-agaacctagcataatacctgaaaa---atagaagaaatcaataaa--tattCCATTTTCTCTAACCTGCTAATGCAATCtgtacagaaaagaattagcatcaggcttgagactgctatccatagaaagccctgct-------------------------------------tgggtttcagagatattcccac-cataccctaaatgataagagtgtcttactgtgcctca-ac-tatatacaaacaatatgatctatgcttagcatctgctttccttcttggagtctgaaatgttag----------aacgatctaggcaaacaaaatctacatgaccagcccccagtaaagatcttgggcactgagtctctaattagcttctctgatcagaaacatcaaataca--tgttactaca-ttttgttgcaaggggat--aggaaac--tgtgtgaccttta-------cggaagggagggagcac-aggaagcctgcac-atggattcttccagactctccctgtgccttgttcttttgta-------tg--tgtctatgtaatttcattgtaataaatcttagtcataagtacaattatatgctgagtcctgtgagtc---ctAGTGA--CTCTGTAAACATAG-G i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64137516 677 - 94057673 aCtctctctgatat-------cacctaatttatttctacagtcacactt-tcag-agtctgcattttatctaggtcatgtgctaacttgttc---atttttatcctctcaccagaaagtaagcactgcacgggcagggaat----gtctccaatgctcactactgtatccaccgcacccagcacagcaccggagaa---atggaagaaatctacata--tatttggtgTTCCATGAACTGCCACAGCAGCCtgtgcag-aaagaattagcactgggcctgagaccactctgcagagacaggcctgccggtgaggctggtggcccttggctggcatttgggaacttgcgttttgggagtgtccccac-cattcc----ctgataaaagtggctccctgcc-ccag-ac-cgagtacaaaaaacacagtccatgct------------ctccttccagggtctgaaaggct---------------------------------------------------------------ggtg-tgagtctc--attggcttccctgggcagacatatcacacacg----tcactgcagtttcgtcaccgggggat-gagtgagctctctgtggcccttg--------tagagggagagagccc-aagaagtctgca--gtggattcttc--gagtctgctgtgacttttccct-tgg-ggtgaagctgtgtgtcctgattaggtcactgtaataaatctgaacatcaagtacaactatattctgagtcc---------ttctagtga--ctctg--aacatgg-g i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 76105 727 - 81011 tctctctaccatattattatttac----cttattTCTATAAGAGCACTT-TCAG-GATCTCGGTTTTACCCTGGTTATTTGAAAACTTGTTC---ACTTTTATCCTCCCGTGAGAAAGTAAGCACTGTGTAGACAAGGAAT-------------------------ACCCACACCATCCAGCACAATACCTTAAAAATAATAAGAGAAATCAACACA--TATTCAATTTTCTATGAACTGCTAAAGTTG-Ttgtgcagaaaagagttggcaccaggcctgagaatgctatgc--acacacgactacttgcaa----ggttgctcttggctagcatttgggaacctgggtttctggagtgttcctac-cattccc-agctgataaaaggggctccctgtg-gtgg-ac-tgcgtgcaaaccacgtggtttatgctgagtacctg---gtctcctgggagtctgaaatgctggactcctagccgaagtgctaggca---gaggtgcctctgaccagctcccaataaa-accctgggtgttcggtctttagtgacctttcctgggcagaaataccacacata----ctactgcattttcattgctggggaag-aagtgagctctgtgtcaccctca--------tggagggagc-agcac-aggaaacctgcac-ctggattcctccagactctgcttgggcccgttcca-tggtgatgcagctatgtgtc---attatgtcactgtaataaatcttagccattcctaca---acatccgcagtcc---------cat---tgaacctctg--agcatagtg i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3181122 676 + 42029645 ACTCTCCACTACATTTTCATCTACCTAACTTATTTCTATAATGGAAATT-TCAG-GGTCTGGGTTTTACCCTGGTTATTTGCCAACTTGATT---ACTTTGACCCTCCCATGAGAAATTAAGTACAGTGTAGGCAGGTAAT--AGATCTCTAATGTTCACTATTGAACCCATGCCACTGAGCATGATACCTGAAAA-----TATACATATCACCATC--TATTCAACCTTCTATGAACTGCTCtag--------------------------caggcatggcaccactatgcaaacacatgattacttgcaa----ggtagtccttggctgccattttgg-------------ggagtgttcccgcttctcccc-agcttataaaaggggctccctgtgcctgg-ac-tgtgtgcaaacaat-tgttctttgctgagcacctg---ctctcctaggagtctgcaatgctgg---------tggtgtgtcaggcat-taagatgtccacaagcagcttccagtaaa-accctggatgctgggtctt---tgagcttccctaggcagaaacactacacata----tTACTGTATTTT----------------------CTTTTTGT----------------TGCAGGGAGC-AGTGC-AGGAAACCCATACTCGGGAGtcctccagactatgctcctacccttccca-tggtgatgaagctc----tc---attacatccc--taataaatctcagcaatatggacaatgataccttgagtcc---------tcctcgtgactctctg--aacatggtg i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 99782 736 - 3408981 ATTGTAT--------------CTTCTAATT---------Aatagcacttaactgtgatctggattttatcttggttatttactaacttgctc-atttttttatcctcccattaggaag----cactataagggcatga---ctatatctctaatgtttactattgtaaccacagcaaccagcaatgtatctgagaa---atagAAAAAAAAAAAAAAACTATTTAATTTTCTCTGAATTGCAAAAGCAGTCtgtgcagagaat-gtcaacagcaagcctgagactgctctcttcagaaaggtctactggcaac---gccagcccttggctggtgtctagaaacttggattttggaaatgttcccac-cgctctttaactcataaggctggatcactgtgcctagtacatctgtgcagacaacaggatctatgctcaacatctcctttccttcagggaatctatcttttcgg---------ttatgtgctaggcag--aatgtgcctatgaccatcccccaataaaaaccttggcggccaagtgaccagcgagcttctcagggcagaagcatcacatgcg----------------tgttgccgggggaaagaatatgctctatgggaccctcacaggagacaggagggagcgagcataaggaagcctgcac-atggattcctccagactctgcctgtgtcttttccc-ttacga------------tccctactacatcactgtcatacactttagctgtgaatacaactatgtgctgagttctgtgagtctttctactaaatctctg--aacatgg-a i loxAfr3.scaffold_113 I 4 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e ponAbe2.chr12 217482 1448 - 136387465 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=174240.000000 s hg19.chrUn_gl000223 54656 152 + 180455 -gggatcttggggactctgacacaCAGCCCCCATTTGTGTAATC--TTGATAATTAGGCTCTCCACTGCCTTGCAATAAAAC--AAATGCTCAGTGTTTTAAGTGCTCAA--TT--------------------TTTTAAA---------AAA---GAACACAAATATCTCATCTTCTTAACTAAGTGTTA s panTro2.chr12 181927 152 - 135371336 -gggatcttggggactctgacacaCAGCCCCCATTTGTGTAATC--TTGATAATTAGGCTCTCCACTGCCTTGCAATAAAAC--AAATGCTCAGTGTTTTAAGTGCTCAA--TT--------------------TTTTAAA---------AAA---GAACACAAATATCTCATCTTCTTAACTAAGTGTTA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 6977 152 + 8399 -gggatcttggggactctgacacaCAGCCCCCATTTGTGTAATC--TTGCTAATTAGGCTCTCCACTGCCTTGCAATAAAAC--AAATGCTCAATGTTTTAAGTGCTCAA--TT--------------------TTTTAAA---------AAA---GAACACAAATATCTCATCTTCTTAACTAAGTGTTA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 218930 141 - 136387465 -GGGATCTTGGGGACTGTGACACACAGCCTCCATTTGTGTAATC--TTGATAATTA-GCTCTCCACTGCCTTGCAATAAAAC--AAATGCTCAGTGTTTTAAGTGCTCAA--TT--------------------TTTTAA----------------------AAATATCTCATCTTCTTAACTAAGTGTTA i ponAbe2.chr12 I 1448 C 0 s rheMac2.chr11 190767 148 - 134511895 -gggatcttggagaccctgacacaCAGTCCCCATTTGTGTAATC--TTGATAATTA-GCTCTCCACTGCCTTGCAATAAAAC--AAATGTTCAGTG-TTTACGTGCTGAATTTT--------------------TTTTAAA---------AAA---GAACACAAATGTCTCATCTTCTTAACTC----CTA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 1734 140 - 51117 -----TCTTA--------GACACATAGTCCCTATTTATATAATTAATTAACAATTA-ACCTTGCACTGCCTTACAACAAAAT--AAATGCTCAAT-TTTTAAATCCTGAA--TT--------------------AAAAAAA---------AAT---AGATGCAAATGACTCATCTTCTTAACTAAGTTCTA i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64138193 96 - 94057673 -atggtcttgggg---------------------------------------acTA-ACTTTGCGC-----TGCAATGAGACATAAA----CACTG-TTTAAATGCTGAA--TT--------------------AAAAAAA---------AGAGCTGGATGCAAATGTCTC-TTTTCTT------------ i equCab2.chr8 C 0 I 8 s felCat3.scaffold_141210 76832 143 - 81011 -gtgttcttggggacccTGAAGTGCAGGCCTT-----GTTAATT--TTGACAACTA-ACTTTGCGCTACATTGCAGTGAAACATAAATGTTCACTA-TTTAAATGCAGAG--TT------------------------AAA---------AAAATTGGATGCAAATGTCAC---TTCTTAAGTAAGTTCTA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3181798 174 + 42029645 -gtggtcttgaggaccctgacacaCAGGGCTTATTTAGTTAACT--CTGACAACTA-AC--TACACTGCATTGTAGTGAAACATAAACGTTCAACA-TTTAGATGTTGAA--TTCCCAGGAAAAAAAAAAAAAAAACAAAACACCACACCAAAACTGGACGCAAATG--------TCTTCACTAAGTTCTA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 100518 120 - 3408981 ggtggtgttggggaccccca-atacaGCCTCTGTTTGTATAATT--CTAAGAGCTG---TTTGCACTGCCTTATAACAAAAC--ATACACTCGGTG-TTTAAATACTGAA--TC--------------------TTCTC----------------------------------------GACTAATTTCTA i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I a score=137600.000000 s hg19.chrUn_gl000223 54808 135 + 180455 TGCTTCTACAACTTAT-----TTTCTGG---TCTTACTTTGTAATCCTTTTCAGTAAAGGATTAAACCCACTAGGTGAG--------TGG----------ATCTCAACTA-AAAA-GGGCACAT-------AAAAACAACAAGA---AGTTTCTCAAATTACAAATCT--GCCTT- s panTro2.chr12 182079 135 - 135371336 TGCTTCTACAACTTAT-----TTTCTGG---TCTTACTTTGTAATCCTTTTCAGTAAAGGATTAAACCCACTAGGTGAG--------TGG----------ATCTCAACTA-AAAA-GGGCACAT-------AAAAACAACAAGA---AGTTTCTCAAATTACAAATCT--GCCTT- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7129 135 + 8399 TGCTTCTACAACTTAT-----TTTCTGG---TCTTACTTTCTAATCCTTTTCAGTAAAGGATTAAACCCACTAGGTGAG--------TGG----------ATCTCAACTA-AAAA-GGGCACAT-------AAAAACAACAAGA---AGTTTCTCAAATTACAAATCT--GTCTT- i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 219071 135 - 136387465 TGCTTCTACAACTTAT-----TTTCTGG---TCTTACTTTGTAATCCTTTTCAGTAAAGGATTAAACCCACTAGGTGAG--------TGG----------ATCTCAACTA-AAAA-CGGCACAT-------AAAAACAACAAGA---AGTTTCTCAAATTACAAATCC--ATCTT- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 190915 137 - 134511895 TGTTTCTGGAACTTAT-----TTTCTGG---TCTGTCTTTGTAATCCTTTTCAGTAAAGGATTAACCCCACTGGGTGAG--------TGG----------ATCTCAACTA-AAAA-GGGCACAT-------AAAAACGACAAGA---AGTTTCTCAAATTACAAATCCCAGTCTT- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 1874 128 - 51117 CACTTCTGAAACTTAT-----TTTCTGGTC-TCTTACTTTTTAATGCTTTTCAGT-AATCATTAAA----------GTG--------TGG----------GTCTCAACTA-AACA-GGGCATAT-------ACAAATCACAAGA---GGTTTCTCAAATTACAAATACCAGTCCT- i micMur1.scaffold_9962 C 0 C 0 s felCat3.scaffold_141210 76975 134 - 81011 TGCTTCTGTATGGTAT-----TTTCCAGGTATTTTACTTTTTAATCACTTT-AGTAGAAACTCAA---------GTG-G--------TGG----------CCATCAATGA-GAGAGGGGCACATAAAAAAAAAAAATCACAAGA----GTTTCTCAAACTACAAATTCCAGTT--- i felCat3.scaffold_141210 C 0 I 69 s canFam2.chr26 3181972 103 + 42029645 CACTTCTGTAAGGTAT-----ATTTGAGGT-TTTTA-TTTTTAATC----------------------------GTG-G--------ATG----------CTATCAACAA-ATGAGGGGCACAT-------AAAAATCATAAGA---GGTTTCTCAAACTACAAACTC-------- i canFam2.chr26 C 0 I 151 s loxAfr3.scaffold_113 100638 124 - 3408981 TGCTTCTGGAAGGTAC-----TTTCTAGGTCTCTTACTTTAAAATTCTTTTCAGTAG----------TCATTAAAGGAG--------TGG----------GCCTCCACTA-AATG-GGGCACAT-------AAAAATCACTAGAGAAGGTTTATCA---TACCAGTCCC------- i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr2 21773012 122 - 58009534 TGTACCTATGACCAGAAGTTACATTTCA---TCATGTCATG----------CAG-GAATAATGAA------CAGAATAG--------TGG-----TGATATTATAAACTA-AAGA-AGGAACAC-------AAAAATAAAAATG---CATTA-----AATATGAAT----GTTTTC i danRer6.chr2 N 0 C 0 s oryLat2.chr17 11091869 121 + 31848461 ---------------------TTTTTGA---TCTTGCTCTGAACTGGCTGCCAG-ACATTAAAAAACCCTGCAGTACAACCCTTCATTGAATATCTGATTTTTTCTACGGTAAGA-TGGCACAT-------AAGATCAACAAGA---TATTTCCTAA------------------- i oryLat2.chr17 N 0 I 43914 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64138289 8 - 94057673 I a score=-6868.000000 s hg19.chrUn_gl000223 54943 54 + 180455 ACCACATaaaa--caaaa---------------------------------------------------------------aaaaaaaccaaaaaacaaaacaaaac-aaac----------------------aaaaca----------ca s micMur1.scaffold_9962 2002 151 - 51117 ACCATAACAAATTCAAAAGCTAAACACACATCACTCTATTAAATCAGTTTGTGCTATTGGATCCATGATGCCTATAGTTGGAAAAAAATCCCAAGGTAAGGTAATGC-ACACTCTGGCTAAAAACAGCTGTATTAAAACAATGTTTGggccg i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 191052 55 - 134511895 ACCACATaaaa--caaaa---------------------------------------------------------------caaaaaaacaaaaaacaaaacaaaacaaaac----------------------aaaaac----------ca i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219206 51 - 136387465 ACCACATaaaa--caaaa---------------------------------------------------------------aaaa---acaaaaaacaaaacaaaac-aaac----------------------aaaaca----------ca i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7264 36 + 8399 ACCACATAAAA--CAA---------------------------------------------------------------------------------AAAACAAAAC-AAAC----------------------AAAACA----------ca i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182214 42 - 135371336 ACCACATaaaa--aaaaa---------------------------------------------------------------aaaa------------aaaacaaaac-aaac----------------------aaaaCA----------ca i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 100762 24 - 3408981 -----------------------------------------------------------------------------------------------ATCATACCAAAT-ATAT----------------------AAACTA----------CA i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr2 21773134 54 - 58009534 AGAACAGAAAT--AGGAA---------------------------------------------------------------AGAAAAGTTTGAGTGGCATGCGCTAG-AAAC----------------------AACATT----------CA i danRer6.chr2 C 0 N 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 77109 69 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64138289 8 - 94057673 I e canFam2.chr26 3182075 151 + 42029645 I a score=99750.000000 s hg19.chrUn_gl000223 54997 120 + 180455 ggcatggtggcacacacctgtagtcccatctactcaggaggctgaagcaagaggatcacttcagcccaggaatttgagg---ctgcagt---gacctatgatcacgccaatgcaatgcaacctggg s micMur1.scaffold_9962 2153 89 - 51117 ggcgtggtggctcacgcctgtaatcctagcactctgggaggctgaggcgggtggattgctcaaagtcaggagttcgaaa---c----------------------------------cagcctgat i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 191107 115 - 134511895 ggcatggtggcacacacctgtagtcccatctacttagga-----cagcaagaggatcactttagcccaggaatttgagg---ctgcagt---gacctatgatcatgccaccacactgcaacctggg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219257 120 - 136387465 ggcatgatggcacacacctgtagtcccatctactcaggaggctgaagcaagaggatcacttcagcccaggaatttgagg---ctgcagt---gacctatgatcacgccaatgcaaagcaacctggg i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7300 120 + 8399 ggcatggtggcacacacctgtagtcccatctactcaggaggctgaagcaagaggatcacttcagcccaggaatttgagg---ctgcagt---gacctatgatcacgccaatgcaatgcaacctggg i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182256 120 - 135371336 ggcatggtggcacacacctgtagtcccatctactcaggaggctgaagcaagaggatgacttcagcccaggaatttgagg---ctgcggt---gacctatgatcacgccaaggcaatgcaacctggg i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 100786 90 - 3408981 CATATATT------CATTTGTA-------------------CTGAAGCACG--------TTCTGTTAATGGATCCATGATGCCTGTAGTTGGGGAAAAAAATCCTATCAATCTGATGCACACT--- i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 77109 69 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64138289 8 - 94057673 I e canFam2.chr26 3182075 151 + 42029645 I a score=34314.000000 s hg19.chrUn_gl000223 55117 37 + 180455 caacagaccaagaccctgt-----ctataaaaacaaagacaa s panTro2.chr12 182376 37 - 135371336 caacagagcaagaccctgc-----ctataaaaaCGAAGACAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7420 37 + 8399 caacagaccaagaccctgt-----ctataaaaacaaaGACAA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 219377 37 - 136387465 caacagaccaagaccctgt-----ctataaaaacaaaGACAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 191222 37 - 134511895 caacagaccaagaccctgt-----gtataaaaacaaaCACAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 2242 37 - 51117 ca--agagcaagaccccgtctctactataaatagaaaGA--- i micMur1.scaffold_9962 C 0 M 1301 s felCat3.scaffold_141210 77178 33 - 81011 CACCTGGCTAAAAACACCT-----GTATTAGAACAATG---- i felCat3.scaffold_141210 I 69 C 0 s loxAfr3.scaffold_113 100876 28 - 3408981 ---CTGGCTAAAGCAATCT-----GTATTAAAACAA------ i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e oryCun2.chrUn0106 660299 4511 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 331087 85902 - 667635 I e equCab2.chr8 64138289 8 - 94057673 I e canFam2.chr26 3182075 151 + 42029645 I a score=277933.000000 s hg19.chrUn_gl000223 55154 147 + 180455 GGCTTTTGGAAAGAAATTTATCGAA-----CATTACATGTTCTATAACTAAAGT-GAAGACATTT--AATTATAAGCCCCTGCATTTATGTGTGCAAACAAAGCTCAGGGACCAACCTTCTAAAAAATATTATATATACTACGATCAGGTCACAG s loxAfr3.scaffold_113 100904 153 - 3408981 TGCTCATGACGAGATATTTATTGAAATGTGTATTATGTATTCCATTACTGAAGT-GATGATATTAACAATTGCAAGCC-CTGTGTCAATGTATGCAAACAAGGCTCAAGACCCAACCAGCTAAAAAGTATTACATGTACTGTGATCAGGTCTGGG i loxAfr3.scaffold_113 C 0 C 0 s oryCun2.chrUn0106 664810 132 + 1032594 --CTTATAGAGAAAAATTTATGGAA-----TATAA------CTAAAGATATAACTGGAAATATTA--AATTAAAAGCCTTTGCATCTCCGTGCAC----AAAGTTCAGTGACATATCAACTACAAAGTACTATAC----TGCGACCAAGTTTGGA i oryCun2.chrUn0106 I 4511 C 0 s cavPor3.scaffold_248 217112 122 + 667635 -----------------------AA-----TACTATATGCTCCATAAATAAAGC-ACAGATGTGA--AATCCTAAGTCTTTGCATCTGTGTGTGCAAATAAAGCTCAGGGAAA-ACCAACTA-AAAATATTATAAACAGTGTGATCAGGTCTGGG i cavPor3.scaffold_248 I 2213 C 0 s felCat3.scaffold_141210 77211 142 - 81011 GGCTTGTGGAGAAGAATTTGCGGAA-----TG-AATCCTGTCTGACACAGAGCT-G--GGTATAA--AACTATAAGCC--TGTGTCTGTGCATGCACACAAAGCTCAGAGACCAACCAACTAAAGAATATTACCCAGCCTGTGATCAGGTCTGGA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3182226 141 + 42029645 GGCTTATGAAGAGATATTTATTGAA-----TG-AATATTGTCTAACACATAAAT-G--GAAATAA--AACTATAAGCC-TTGTGTTTATGCATGCACAC--AGCTCAGGGACCAACCACCTAAAGAATATTACATACACTGTGATCAGGTCTGGG i canFam2.chr26 I 151 C 0 s rheMac2.chr11 191259 147 - 134511895 GGCTTTTGGAAAGAAATTTATCAAA-----TATTACACGTTCTATAACTAAAGT-GAAGACATTT--AATTATAAGCCCCTGCATCCATGTGTGCAAACAAAGCTCAGGGACCAACGTTCTAAAAAATATTATACATACTATGATCAGGTCACAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219414 147 - 136387465 GGCTTTTGGAAAGAAATTTATCGAA-----TATTACATGTTCTATAACTAAAGT-GAAGACATTT--AATTATAAGCCCCTGCATCTATGTGTGCAAACAAAGTTCAGGGACCAACCTTCTAAAAAATATTATATATACTATGATCAGGTCACAG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7457 147 + 8399 GGCTTTTGGAAAGAAATTTATCGAA-----CGTTACATGTTCTATAACTAAAGT-GAAGACATTT--AATTATAAGCCCCTGCATCTATGTGTGCAAACAAAGCTCAGGGACCAACCTTCTAAAAAATATTATATATACTACGATCAGGTCACAG i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182413 147 - 135371336 GGCTTTTGGAAAGAAATATATCGAA-----CATTACATGTTCTATAACTAAAGT-GAAGACATTT--AATTATAAGCCCCTGCATCTATGTGTGCAAACAAAGCTCAGGGACCAACCTTCTAAAAAATATTATATATACTACGATCAGGTCACAG i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrXIII 16789160 5078 + 20083130 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_2942 6515 0 - 14700 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=85624.000000 s hg19.chrUn_gl000223 55301 46 + 180455 ATGGGACTTCAGAAAAA-GCTGAGAAAAATGTAGGATGGGGTAGTAA s xenTro2.scaffold_967 153257 42 + 251392 ATGACAATTTAGAGTTT-GCAAAGAAATAT----GAACAAATAGTAA i xenTro2.scaffold_967 n 0 C 0 s loxAfr3.scaffold_113 101057 46 - 3408981 ACAAGACTTCAGAAAAA-GGTGAGAAAAATTTAGCTTGGAGTATTCA i loxAfr3.scaffold_113 C 0 C 0 s oryCun2.chrUn0106 664942 45 + 1032594 ACAGAACTTCAGAAAAA-GGAGAGAAAACT-TTAGCTGAAATATTCA i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 217234 45 + 667635 ATGAAACTTAAGAAAAG-TGGGAGAACAAT-TAGGGCGGAGTGTTCA i cavPor3.scaffold_248 C 0 C 0 s felCat3.scaffold_141210 77353 44 - 81011 ATGGGACTTCTGAAAAA-AGTGAGACCAAC-TGAGCTGGA-CAGTCA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3182367 46 + 42029645 ATGGGACTTCAGAAAAACAGTGAGAAAAAC-TCAGCTGGAGCAGTCA i canFam2.chr26 C 0 C 0 s rheMac2.chr11 191406 46 - 134511895 ATGGGACTTCAGCAAAA-GCTGAGAAAAATTTAGGCTGGGGTAGTCA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219561 46 - 136387465 ATGGGACTTCAGAAAAA-GTTGAGAAAAATTTAGGCTGGTGTAGTAA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7604 46 + 8399 ATGGGACTTCAGAAAAA-GCTGAGAAAAATGTAGGCTGGGGTAGTAA i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182560 46 - 135371336 ATGGGACTTCAGAAAAA-GCTGAGAAAAATGTAGGCTGGGGTAGTAA i panTro2.chr12 C 0 C 0 s gasAcu1.chrV 12246646 23 + 12251397 ------------------------AAATATGTAAGACAAGTTCATAT i gasAcu1.chrV n 5078 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=125165.000000 s hg19.chrUn_gl000223 55347 71 + 180455 AGGAACAT--------TTCATAAATATGAA---TGCA---GTGAAAATCAAGTTCCTATGGAAAGGA-TTAAGAATTTCTAGGTAA s panTro2.chr12 182606 71 - 135371336 AGGAACAT--------TTCATAAATATGAA---TGCA---GTGGAAATCAAGTTCCTATGGAAAGGA-TTAAGAATTTCTAGGTAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7650 71 + 8399 AGGAACAT--------TTCATAAATATGAA---TGCA---GTGAAAATCAAGTTCCTATGGAAAGGA-TTAAGAATTTCTAGGTAA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 219607 71 - 136387465 AGGAACAT--------TTCATAAATATGAA---TGCA---GTGAAAATCAAGTTCCTATGGAAAGGA-TTAAGAATTTCTAGGTAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 191452 71 - 134511895 AGGAACAT--------TTCATAAATATGAA---TGCA---GTGAAAACCAAGTTCCTATGGAAAGGA-TTAAGAATTTCTAGGTCA i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3182413 61 + 42029645 A-AAACAT--------TCCATGAATATGAA---TGCA---GGGAAAATAGAGCTTATACAGTCAGGA-ATAAGT---------TAA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 77397 65 - 81011 AGGAACAT--------TCCATGTCTATGAA---TGTGTATGTGAAAACAGAGTTTGTGTGGAAAGGA-TTAAGA---------TAA i felCat3.scaffold_141210 C 0 C 0 s cavPor3.scaffold_248 217279 30 + 667635 AGGAATAG--------CTCATGAG------------------------------------------------GAGTATCTTCATAG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 664987 71 + 1032594 AGGAATAT--------TTTGTGAATATGAA---TGCA---GTAAAAAGTGAGTTCCTATGGAAAAGA-TTACAAATTTCTAGATAA i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 101103 71 - 3408981 GGGAACAT--------TTCACGACTATGAA---TGCT---GTGAAAACTGAGTGCATGCAGAAAGGA-TTAAGAGTTTCTCGATAA i loxAfr3.scaffold_113 C 0 I 202 s echTel1.scaffold_259995 78 69 + 4370 AGAAACAT--------TTTGTCACTATTAA---TGCA---GTGAGA--CTATTGTATGTAGAAAGGC-TTAAGCATTTCTAAATAA i echTel1.scaffold_259995 N 0 C 0 s xenTro2.scaffold_967 153299 62 + 251392 ATAAATGT--------TCGTTTGATATAAT---TCTA---TTGAATATTGAGTACTTACAGAGAGAAGTTATGGAG---------- i xenTro2.scaffold_967 C 0 C 0 s gasAcu1.chrV 12246669 70 + 12251397 -AAAATATGTATAGTATTAGTAATAATAAATCTTGTA---TGAAATATCGAGTAATGACATGAATCA-CTAATAA----------- i gasAcu1.chrV C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=21045.000000 s hg19.chrUn_gl000223 55418 58 + 180455 -------CTAGTATAATACCATCAAAAGTTC---AA-----------------------------------------GATGTTACATATCTAAAAACAC----------TTGAGAAATG s panTro2.chr12 182677 58 - 135371336 -------CTAGTATAATACCATCAAAAGTTC---AA-----------------------------------------GATGTTACATATCTAAAAACAC----------TTGAGAAATG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7721 58 + 8399 -------CTAGTATAATACCATCAAAAGTTC---AA-----------------------------------------GATGTTACATATCTAAAAACAC----------TTGAGAAATG i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 219678 58 - 136387465 -------CTAGTATAATACCATCAAAAGTTC---AA-----------------------------------------GATGTTACATATCTGAAAACAC----------TTGAGAAATG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 191523 58 - 134511895 -------CTAGTATAATACCCTCAAAAGTTC---AA-----------------------------------------GACATTACATATCTGAAAACAC----------TTGAGAAATG i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3182474 68 + 42029645 ---------AGCATAGCACGATCAAATGTTC---AGATCCAGTGAAGAATA--------------------------AATATTAC--ATCTGAAAACAC-----------TGAGGAATC i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 77462 64 - 81011 ---------AACACAGCACAATCAAACGG-----AGATGCAGAGAAGAGTA--------------------------AGTATCTC--GTCTGAAAACAC-------------AGAAATG i felCat3.scaffold_141210 C 0 C 0 s cavPor3.scaffold_248 217309 67 + 667635 -------CACATAGAGCACAATCAGAAGGTT---AG--GCAGAGAAAA-----------------------------AATGTTAAATGTTTGAAAACA-----------ATAAGAAATT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 665058 72 + 1032594 -------CTACCACAGCACAATCAAAATTTC---AGATGCAAACAAAAATG--------------------------AATATTACAGGTCTGAAACTA-----------GTGAGAAATG i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 101376 101 - 3408981 -------taaaaattaaaaaaaaaaaGTTTCTCGATAAGGAAAGCAGAGCATAAACAAAGGTTTAGATGTAGAGAAGAGTATTACGTGTATGAAAACA-----------CTATGAAACA i loxAfr3.scaffold_113 I 202 C 0 s echTel1.scaffold_259995 147 86 + 4370 -------TGAAAATACAGGAAGCAAAGGTTC---AGAAGCAATGCAGAACAT-------GCTTCTGCTACAATGCAAA-----CCACGTATGGAAACA-----------TTAAGGTACA i echTel1.scaffold_259995 C 0 C 0 s xenTro2.scaffold_967 153361 52 + 251392 -------ACAAAACAACGCCTTCAAACGATT---G------------------------------------------AGTGTGAG-----TTGAAACAG----------CAAACTAATA i xenTro2.scaffold_967 C 0 I 6 s gasAcu1.chrV 12246739 75 + 12251397 CCTGTAATATTAATAGTATTAACAAATAATA---AA-----------------------------------------TATGTTACAGAGATGTAAACATGTCAGAGAGAGTTAGAAACA i gasAcu1.chrV C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=28155.000000 s hg19.chrUn_gl000223 55476 56 + 180455 TTTAAATGGAA-CTGACCATGAA----TGGGAGATA-----GGAAGA-AATAAC------TGAACAGGCAGCA----- s rheMac2.chr11 191581 56 - 134511895 TTTAAATGGAA-CTGACCATGAA----TGGGGGGAA-----GGAAGA-AATAAC------TGAACAGGCAGCA----- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219736 56 - 136387465 TTTAAATGGAA-CTGACCATGAA----TGGGAGGAA-----GGAAGA-AATAAC------TGAACAGGCAGCA----- i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7779 56 + 8399 TTTAAATGGAA-CTGACCATGAA----TGGGAGATA-----GGAAGA-AATAAC------TGAACAGGCAGCA----- i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182735 56 - 135371336 TTTAAATGGAA-CTGACCATGAA----TGGGAGATA-----GGAAGA-AATAAC------TGAACAGGCAGCA----- i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 665130 55 + 1032594 TTTAAGTGGAG-CTAACCATGAA----TGGG-GGTA-----GGGGAA-TTTAAA------TGAACAAGTAACG----- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 217376 19 + 667635 TTTAAACGCAG-GCATCTGT---------------------------------------------------------- i cavPor3.scaffold_248 C 0 I 15 s bosTau4.chr17 29956063 58 - 76506943 TTTAAATGAAA-CTGACCACCAAC--TTGGAGCAAA-----GGGAGT-AACTGC------TGAACAGGCTACA----- i bosTau4.chr17 N 0 I 58 s felCat3.scaffold_141210 77526 59 - 81011 TTCAAATGGAG-TTGACCATGAAT--TTGAGGAAGA-----GGGTATAAACAGC------AGGAGAGGCTGCA----- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3182542 56 + 42029645 TTTAGATGGAA-TTGACCATGAG---TTGGGGAAAA-----AAGAGTAAAGAGC------TG--ACAGCCACA----- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 101477 54 - 3408981 TTCAGATG----TTCACCATGAAT--TTGGGGGGCAA----AAAAGA-AATAAC------TGAACAGATAA------- i loxAfr3.scaffold_113 C 0 I 1 s echTel1.scaffold_259995 233 60 + 4370 TTTAGATG----TTGGTCACAAGT--TCGTGGGGCAAAAGTAAAAGA-AATGTC------TGAGGAAGGAAAC----- i echTel1.scaffold_259995 C 0 I 3 s xenTro2.scaffold_967 153419 48 + 251392 ------------TTTATCAGGAACAGCTGAGACATA-----TGGAGG-AGAGCC------TGTCTAAACATC------ i xenTro2.scaffold_967 I 6 C 0 s gasAcu1.chrV 12246814 71 + 12251397 TTTAATTATAATCTGAGCATCAT-GCTAATGATAAA-----AGAAGG-AAAAACCTCCCATGAACATGAAGGACATCA i gasAcu1.chrV C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=32107.000000 s hg19.chrUn_gl000223 55532 58 + 180455 GTAGTGTCATA-----------------------------------CTATGG----------AGGTCCC---TGAAAGCAGAGATTACAAGTCtatagcaga----------tgct s rheMac2.chr11 191637 58 - 134511895 ATAGTGTCATA-----------------------------------CTATGG----------AGGTCCT---TGAAAGCAAAGATTACAAGTCtgtagcaga----------tgct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219792 58 - 136387465 ATAGTGTCATA-----------------------------------CTATGG----------AGGTCCC---TGAAAGCAGAGATTACAAGTCCgtagcaga----------tgct i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7835 58 + 8399 GTAGTGTCATA-----------------------------------CTATGG----------AGGTCCC---TGAAAGCAGAGATTACAAGTCtatagcaga----------tgct i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182791 58 - 135371336 GTAGTGTCATA-----------------------------------CTATGG----------AGGTCCC---TGAAAGCAGAGATTACAAGTCTATAGCAGA----------TGCT i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 665185 57 + 1032594 C-AGTGTTACA-----------------------------------CTGTAG----------AGAGCCT---AGAAAGAAGAGATCATAAATCTGAAGCAGA----------TGCT i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3182598 39 + 42029645 -CAGACTCAGA-----------------------------------CCTTGA----------AGATTC----TGTAGGAGGAGGC---------------------------TGCC i canFam2.chr26 C 0 I 18 s felCat3.scaffold_141210 77585 65 - 81011 -CAGATTCACA-----------------------------------CAGTGG----------AGAGCC----TGGAAGAAGAGACTATAGG-CTGTAGCAGACTCTTGTCAATGCC i felCat3.scaffold_141210 C 0 I 19 s loxAfr3.scaffold_113 101532 58 - 3408981 AGAGTGTCAGA-----------------------------------TTGTAC----------GGGTTCT---TGAAAGAAGAGATCACAAATCTGTAGCACA----------TGCT i loxAfr3.scaffold_113 I 1 I 4 s echTel1.scaffold_259995 296 103 + 4370 AAAGTATAAAAATCTTGTCTTTAATTGGTTTCGTCTTACAACGTGTTTGCACACGTAGACAAGAGTGCTGTCTGAAAGAAGGGACCAC--ATCTGTAGCACG----------CA-T i echTel1.scaffold_259995 I 3 I 4 s xenTro2.scaffold_967 153467 47 + 251392 -----GTCAGT-----------------------------------CCATAG----------AG--------GAACGGAAGCGTTTGAAATTCCATAG-AGA----------TGAG i xenTro2.scaffold_967 C 0 n 0 s gasAcu1.chrV 12246885 49 + 12251397 --CAAATAAAA-----------------------------------CAAGAA----------CAAGTTA---TTTAATGAGAAACCTTA-GTGTGTTGTT---------------- i gasAcu1.chrV C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e tetNig2.chr15 4882287 0 - 7320470 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 217395 15 + 667635 I e bosTau4.chr17 29956121 58 - 76506943 I e equCab2.chr8 64138289 8 - 94057673 I a score=32466.000000 s hg19.chrUn_gl000223 55590 91 + 180455 gcc----------actgcatcgccaatact---------------------------------------------ctgacatgat-----tc---------------ctacccgag----gcactcacaactctctacccaagaactt----tcttgagctgaaagcataagat s rheMac2.chr11 191695 91 - 134511895 gcc----------accgccccacccatacg---------------------------------------------ctgaccagat-----tc---------------ctaccggag----gcactcacgactctctacccaagaacct----tctcgagctgaaagcacaagac i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219850 91 - 136387465 gcc----------actgcctcgcccatact---------------------------------------------ctgacatgat-----tc---------------ctacccgag----gcactcacaactctctacccaagaactt----tcttgagctgaaagcacaagat i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7893 91 + 8399 gcc----------actgcctcgcccatact---------------------------------------------ctgacatgat-----tc---------------ctacccgag----gcactcacaactctctacccaagaactt----tcttgagctgaaagcacaagat i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182849 91 - 135371336 GCC----------ACTGCCTCGCCCAtact---------------------------------------------ctgacatgat-----tc---------------ctacccgag----gcacttaaaactctctacccaagaactt----tcttgagctgaaagcacaagat i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 665242 133 + 1032594 ATTAGTCTTACTAACGCCCTCAGCTAAATT-------------CAGGGAATAACTGCAGTTTTAATGGATAGTTCCTGACATAGA-----GC---------------CTACTAAAG----gcacctgcacttttttgcccaaaacctt----tcttgggctgcaagtgcaagct i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29956179 88 - 76506943 CAC----------TGCAGCTCAGGCCAATT---------------------------------------------GTGGG----------GC---------------CCAACCAGC----GTGCCCA--CATCGCTCCACCATGAGATGGAGAGATGGGCTGCAAGTGCATTTT i bosTau4.chr17 I 58 C 0 s felCat3.scaffold_141210 77669 86 - 81011 ACC----------TGCACCCTGGGAAGACT---------------------------------------------GTGGG----------GC---------------CCACCCCAG----GCACCCATCTCTCTCTGCCCAAAATAAT----CCTTAAGCTGCAAGCGCATGCT i felCat3.scaffold_141210 I 19 C 0 s canFam2.chr26 3182655 94 + 42029645 ACC----------GGCATCTTGGGTGGACT---------------------------------------------GTGGGCCCACCCCAAGT---------------CTACCCTGG----GCACCCA--CGTCTCTGCCCCAAACAAT----CCTTAAGCCACAAGTGCACGCC i canFam2.chr26 I 18 C 0 s loxAfr3.scaffold_113 101594 125 - 3408981 AGC----------CTTGCTTCATCTACACCTCATGCCTCCACACAGAAGACACCTGCAGCTCCA-----------GTGAATAGAT-----CCTGAACACACAAATGGCTA-TCGGGCTcagcacctacatctctctggctgagacctc----tctt------------------ i loxAfr3.scaffold_113 I 4 C 0 s echTel1.scaffold_259995 403 141 + 4370 ACC----------CTCGCTTTGCTTTTCCTTCTGGGTCCCTCA---AACACACTTGCAGCTTTG-----------GTGACTAGAT-----CCTGTGCACATACTTAGTTACTcaacaccagcacctgcatctctctggctaagtcctt----tcttgggctgcaaatgcatact i echTel1.scaffold_259995 I 4 C 0 s gasAcu1.chrV 12246934 76 + 12251397 -------------GTCGCTCC------ACC---------------------------------------------CTGACGTTGC-----TC---------------CTCCTCCAG----GTGCACCACACCTTCTCCTCCACCTCCT----CCCTCACCACCGAGCA------ i gasAcu1.chrV C 0 n 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 217395 15 + 667635 I e equCab2.chr8 64138289 8 - 94057673 I a score=162500.000000 s hg19.chrUn_gl000223 55681 134 + 180455 tggtctgtatgcagg-gaccctggaca-ttctggatacttactat--------------g--gcagagcaaacct---ccgg-actgagagatgggagttagtacata--aatacc-tgggcttcctggtacctcagagtatcaagactgaggaatatt s rheMac2.chr11 191786 133 - 134511895 tagtctgtatgaagg-gaccctggaca-ttctggatacttactgt--------------g--gcagaggaaacct---caag-a-tgagagatgggagttagtacata--aatacc-tgggtttcctggtacctcagagtgtcaagactgaggaatatt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 219941 134 - 136387465 tggtttgtatgcagg-gaccctggaca-ttctggatacttactac--------------g--gcagagcaaacct---ccag-actgagagatgggagttactacata--aatacc-tgggcttcctggtagctcagagtgtcaagactgaggaatatt i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 7984 134 + 8399 tggtctgtatgcagg-gaccctggaca-ttctggatacttactat--------------g--gcagagcaaacct---ccgg-actgagagatgggagtnagtacata--aatacc-tgggcttcctggtacctcagagtatcaagactgaggaatatt i gorGor1.Supercontig_0030964 C 0 C 0 s panTro2.chr12 182940 134 - 135371336 tggtctgtatgcagg-gaccctggaca-ttctggatacttactat--------------g--gcagagcaaacct---ctgg-actgagagatgggagttagtacata--aatacc-tgggcttcctggtacctcagagtatcaagactgaggaatatt i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 217410 103 + 667635 TAGGCTGCATGCAGC-AACACTGGCCA-TCCTGAGAATTTGCCGT--------------ACCCCAA------CCT-------------AGGATAGGTGATG-GGGATA--AAT------------------CCCAGGAGGATAAAGGCAAGAATGTCCT i cavPor3.scaffold_248 I 15 C 0 s oryCun2.chrUn0106 665375 138 + 1032594 tggtctgtgtgcaga-gatgctggacattccagtggacttgacat--------------gtctcaaagcaatccttaacc---attgagaaataggagttacagaaca--aataca-taggcttcctggtccctcagagggtcagaactgaggtacgtt i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29956267 117 - 76506943 GGGGCCATGTGCAGG-GATGCCAGATA-CTCTGGAGCCCTAATAT--------------TCCCTGGGGCAATACT---CAGTCACTGAGGGACAGGAGGCAGAGTGTGGTACT------AGCTTTCTGGTTCCTCAGAGGGT----------------- i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 77755 117 - 81011 TGGTCTGTGTGCAGG-GATTCTGGGCA-TTCTGGAGAATTCACGAACA-----------CCCCCAGAGCAATGCT---CAAGCCCTGAGCACTGGGCGTTAGCAGGTG--ACC------GGCTTCCTGGTCTCTCGGGGGG------------------ i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3182749 122 + 42029645 TGGTCTATATGCAGG-GATTCTAGACA-TTCTGGAGAACTAACACCCACCCCCCCCCCCCCCCCAGGGCAAGGCT---CAGGCCATGAGAAATGGGAGTTAGAGGTTG--AGA------AGCTTCCTGGCCCCTC------------------------ i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 101719 125 - 3408981 --gtctgtgtacaggggatgcaggaag-ttctgaggacttaataa--------------a--cccaggta--------caac-accaaccagcaggaggtggaggata--agtact-atggcttccttgtccctcag--agtcaagtctgaggtatgt- i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 544 125 + 4370 tggtctgtgtgcaggagatgcaggaag-ttgtaaggatttaataa--------------t--cccaggta--------taac-atcaacaaaca------ggaggata--agtaccaatagctagcttgtccctcaggaagttaagacttaggcatgtT i echTel1.scaffold_259995 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 2279 1301 - 51117 M e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=317254.000000 s hg19.chrUn_gl000223 55815 237 + 180455 ctcacagtgcctcagag-gcactcaggagaactga-gcatccactacccacag-cagtagtcggagcgtcagcccatccttcactggcatta---atgcccccagcacttccatggtctgacttgcccattctctcactacatttgtggggaccatgtccccaataagttcttacactcacataag-----tatctgagggtctgcttttgagggaaactgaagtaagtcaATGTCACAAAGCAGATA s panTro2.chr12 183074 237 - 135371336 ctcacagtgcctcagag-gcactcaggagaactga-gcatccactacccacag-cagtagtcggagcgtcagcccatccttcactggcatta---atgcccccagcacttccatggtctaacttgcccattctctcactacatttgtggggaccatgtccccaataagttcttacactcacataag-----tatctgagggtctgcttttgagggaaactgaagtaagtcaATGTCACAAAGCAGATA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 8118 237 + 8399 ctcacactgcctcagag-gcactcaggagaactga-gcatccaccacccacag-cagtagtcggagcgtcagcccatccttcactggcatta---atgcccccagcacttccatggtctgacttgcccattctctcactacatttgtggggaccatgtccccaataagttcttacactcacataag-----tatctgagggtctgcttttgagggaaactgaagtaagtcaATGTCACAAAGCAGATA i gorGor1.Supercontig_0030964 C 0 C 0 s ponAbe2.chr12 220075 237 - 136387465 ctcacagtgcctcaaag-gcactcaggagaactga-gcatccaccacccacag-cagtaatcagagcgtcagcccatccttcactggcatta---atgcccccagcacttccatggtctgacttgcccattcactcactacatttgtggggaccatgtccccaaaaagttcttacactcacataag-----tatctgagggtctgcttttgagggaacctgaagtaagtcaATGTCACAAAGCAGATA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 191919 237 - 134511895 ctcacagtgcctcagag-gcactcagcagaactga-gcatccactacccacag-cagtagtcagagcatcagcccacccttcactggcatta---atgcccccagcacttccatggtctgacttgtccattctctcactacatttgtggggaccatgtccccaataagttcttacactcacataag-----tatctgagggtctgctttggagggaacctgaagtaagtcaATGTCACAAAGCAGATA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 3608 233 - 51117 ctcatggtgcgtcaga--gctctcagcagaaatga-gcccctactgcccacag-cag---tccaagcatcagtccaccatacactcgcatta---gtctccctggcactaccccaatctcactcctccattccctcactgcacttgtggggactacatcttcaataaattcttacactcagacatg-----tattttagggcatgcttttgagggaacttgaagtaagtcaATGTCCCACAGCAGATA i micMur1.scaffold_9962 M 1301 C 0 s cavPor3.scaffold_248 217513 171 + 667635 CCCACAGTGCCTTAGAGAGCTCTCAGCAGCACTGA-GTCCCCATGGCCCACAG-CAA---TGCA-----------ATC------------------TAGtccca------------------------attttcccaatgtactttcaggaactacatc-ccagtaagtttctgcactcagaaata-----tgtc-caggatctgtttctgaaggaacctggagtaaatcaGTAT------------A i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 665513 184 + 1032594 tccacagtgcctcagaggactttgggcacagctga-gaccccactgcccacaa-aac---tccaagcattaacccacc------------------cagcctca------------tttcacttcctcattctcccactgcactggtg--------------agtaaactcttgcactcagataca-----tatctcaggatctgctttcaaggaaacatgaagtaagccaATGTCA----------A i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29956384 148 - 76506943 ---------TCCCAGAA-GCA-----CACTGTTCATGCATTCCTCTCTCACCC-CA---------------TCTCACTTCCC----------------------------------------------CTTCTCCCACTAACACTGTGGAGATCACAGTCC-------------CACTAAG----------TATCTCAGGGTCTGCTTTTGAGGCACCTTGAATTAAGTCAGTGTCACACAATAGGAA i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141210 77872 139 - 81011 ---------TCCAGGCA-GCC---ACCACAGGTGA-GCACCCTTCCATCACATGCAC---TGCCATTCCCTCCCCACCCCACATCAACA------------------------------------CCCTTCCTCCCAC---------------CGCAGTGC-------------CACTCAGATATG-----TATCTCAGGGGGTGATTTCGAGGGAGCCTGAACT----------------------- i felCat3.scaffold_141210 C 0 I 69 s canFam2.chr26 3182871 141 + 42029645 ---------TCCCTGCA-ACA---ACCACAGGTCA-GCACCCTTCCATCACAC-CAC---TACTAGTGTCCTCTCACTGCAC------------------------------------------------TCTCCCAC---------------TAC----------------------CAGGTGGGGACCACATCCCCAGGAAATATCTCGTGGGAACCCAAAGT----CCCTATCATATAGCAGATA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 101844 225 - 3408981 cccatggtccctcataa-ggtccccacagaactga-gctcccactgctcacag-cagtagcccacccatcaacacacccttcactggcattattcatttccccg------------tttcactttcctattctctc--tacacttgtgggggtcacatatcccaaaaatccttgtactcaaagatg-----t-tcctcgggtctgcttttgaagaaacctgaggtaagtcaATGTCACGTAGCAGATA i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_259995 669 0 + 4370 C e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=92107.000000 s hg19.chrUn_gl000223 56052 44 + 180455 ATGAGTAAAGAGGTTCAACTGATCAGAGTAGTGTGGGATGCTTT s panTro2.chr12 183311 44 - 135371336 ATGAGTAAAGAGGTTCAACTGATCAGAGTAGTGTGGGATGCTTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0030964 8355 44 + 8399 ATGAGTAAAGAGGTTCAACTGATCAGAGTAGTGTGGGATGTTTT i gorGor1.Supercontig_0030964 C 0 N 0 s ponAbe2.chr12 220312 44 - 136387465 ATGAGTAAAGAGGTTCAACTGATCAGAGTAGTGTGGGATGCTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 192156 44 - 134511895 ATGAGTAAAGAGGTTCAACTGATTAGAGTAGTGTGGGAAGCTTT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 3841 32 - 51117 ATGA------------AAATGATCACAGTAGTGTTGGATGCTTT i micMur1.scaffold_9962 C 0 C 0 s cavPor3.scaffold_248 217684 43 + 667635 AGGATTTACTTGGTTTAAGAAATCAGTGT-GTGTTGGACAATTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 665697 43 + 1032594 ATGACCAGGGAGGTTTAACTGATCAATCT-GTGCTAGATGCTAC i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3183012 41 + 42029645 ---AGGAGAGCTGTACAGTGGATCAGAAGAGTGCTGGTTGCTTT i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29956532 39 - 76506943 ACGAGGAGGAGGGCCCAGCTGATCAGAGCAGTGCTGGAT----- i bosTau4.chr17 C 0 C 0 s vicPac1.scaffold_11817 47 43 + 44753 ACGAGGAGGGGGGTTCAGTGGGTCTGCGTGGTGCTGGAC-CTGT i vicPac1.scaffold_11817 N 0 C 0 s loxAfr3.scaffold_113 102069 38 - 3408981 ATAAGGTAA------CTACTGGTCACAGTAGTGCTGGATATTGT i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 669 33 + 4370 -----------GGCTTAAATTGTCATAGAAGTGCTCAATGTTTT i echTel1.scaffold_259995 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e felCat3.scaffold_141210 78011 69 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 1597 4382 + 15804 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=69523.000000 s hg19.chrUn_gl000223 56096 59 + 180455 AGGAGATAAA----ATATGGTG-GTATCATT-AAGACAGCCT-----GTAAAATAT---TAGAA-----------TCTGGATCT s panTro2.chr12 183355 59 - 135371336 AGGAGATAAA----ATATGGTG-GTATCATT-AAGATAGCCT-----GTAAAATAT---TAGAA-----------TCTGGATCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 220356 59 - 136387465 AGGAGATAAA----ATATGGTG-GCATCATT-AAGATAGCCT-----GTAAAATAT---TAGAA-----------TCTGGATCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 192200 59 - 134511895 AGGAAATAAA----ATATGGTG-GCATCATT-AAGGTAGCTT-----GTAAAATAT---TAAAA-----------ACTGGATCT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 217727 56 + 667635 AGAAAATCAA----CTATGGTGCATATTGTT-----TAACTT-----ATGAAAGAT---TAGAA-----------TCTAACAAG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 665740 60 + 1032594 CAAAAATCAG----ATACAGTG-GTATTATCTAAAATAATTT-----ACAAAATAT---TAGAA-----------TCTGCATTT i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 90 57 + 44753 CAGAACTCAACACGGTGTGGGG-GGG-------AGAAAACGC-----ACAGAAGAA---GAGAA-----------CCTGGACCT i vicPac1.scaffold_11817 C 0 I 2 s bosTau4.chr17 29956571 48 - 76506943 --------------GCTTGGTG-GTGCC-----ACGTAACTC-----ACAAAAGAAGGTGAGAA-----------CTGGGATCT i bosTau4.chr17 C 0 I 5 s canFam2.chr26 3183053 59 + 42029645 AGGAACTGAAAG--ACATGGTA-TCATT---TAAGAAAACTT-----AGAAAACAT---TAGAC-----------TCTAGACCT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 5979 61 + 15804 AGGAACTCCA----ATATGATG-GGATAACTTAAGATAATAT-----TTAAGGAAA--CTGAAA-----------TCTGTATTT i sorAra1.scaffold_196587 I 4382 C 0 s loxAfr3.scaffold_113 102107 60 - 3408981 AGAAAATCAA----ATATGGTG-GTATCATTTAAGACACCTT-----ATAAAAGAT---TAGAG-----------TATGGATCT i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 702 69 + 4370 AGAAAATTAA----ATATGTTG-GTATTAT-------ACCTTGTTAAATGAATTAT---TAAAAACCTATCTTTCTATGGATCT i echTel1.scaffold_259995 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e micMur1.scaffold_9962 3873 0 - 51117 C e felCat3.scaffold_141210 78011 69 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=160059.000000 s hg19.chrUn_gl000223 56155 85 + 180455 ATCCAGCAATTTGACAACTTCAGAAAT------GAGACATCATGGACCTAGTTTTAAGCGGAAGTTGAGGG------------------AG-GAAGGCTTT---AAA-AAGATA s panTro2.chr12 183414 85 - 135371336 ATCCAGCAATTTGACAACTTCAGAAAT------GAGACATCATGGACCTAGTTTTAAGCGGAAGTTGAGGG------------------AG-GAAGGCTTT---AAA-AAGATA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 220415 85 - 136387465 ATTCAGCAATTTGACAACTTCAGAAAT------GAGACATCATGAACCTGGTTTTAAGTGGAAGTTGAGGG------------------AG-GAAGGCTTT---AAA-AAGATA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 192259 85 - 134511895 ATCTAGCAATTTGACAACTTCAAAAAT------GGGATATCACGGACCTGGTTTTAAGTGGAAGCTGAGGA------------------AG-GAAGGCTTT---AAA-AAGATA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 3873 75 - 51117 -----------TGAGAACTTCAGGAAC------AAGACATCATGGGCCTAGTTTTAAGTGGAAGCTGAGGA------------------AGAGAAAGCTTT---AAA-AAGATA i micMur1.scaffold_9962 C 0 C 0 s cavPor3.scaffold_248 217783 45 + 667635 TCCTGAGA-------AACTTAAGAAAT------GAGAAATCATGGACATAGTTTTCTG-------------------------------------------------------- i cavPor3.scaffold_248 C 0 I 20 s oryCun2.chrUn0106 665800 69 + 1032594 CTCTGGGAATTTGAGAACTTTGGGAAT------TTGACATCATGGGCCTAGTTTTAAGAGGGAGTTCAggc------------------cg-gc-------------------- i oryCun2.chrUn0106 C 0 I 338 s vicPac1.scaffold_11817 149 78 + 44753 --CCAGCAACTTGGGAAATTTAGGAAG------GGGACATCACAGGCCTAGTTTTAAGTGGGAGTTGAGAA------------------GT-CTC-----T---AAA-AAGGTG i vicPac1.scaffold_11817 I 2 C 0 s bosTau4.chr17 29956624 63 - 76506943 AGCTAGTAATTTGGGAAGTTCAGA-----------------CTAGCCTTAGTTTTAAGTGGGAATAGAGAA------------------GT-CTT-----T---CAA------- i bosTau4.chr17 I 5 C 0 s felCat3.scaffold_141210 78080 88 - 81011 ATCCAATTATTTGGATAATTCAGATGTCCCTAAGGGACAGCATGGGCCTAGTTTTAAGTGTGCGTTGAGGA------------------GT-TAAG---TT---AAA-AAGTTA i felCat3.scaffold_141210 I 69 C 0 s canFam2.chr26 3183112 81 + 42029645 ATCAAGCAATTTGGGAAATTCAGGAAT------AAGACATTGTGGGCCTAGTTTTAAGTGTGACTTGAAGA------------------GT-TAAG----T---AAA-AAGATA i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_196587 6040 88 + 15804 TGTCACCAATTTGGGAAATTCGGGAGA---AAAAGCACATTATTAACCTAATTTTAAATGGGTTTTCAAGA------------------TT-TAAGGC-TT---AAAAAATACA i sorAra1.scaffold_196587 C 0 I 747 s loxAfr3.scaffold_113 102167 85 - 3408981 AAATAGCAATTTGAGAAATTCAGGAAT------AAGACATTATGGGCCCAGTTTTCAGTGGCAATTAAGGA------------------AA-GAAGCGTTT---AAT-AAGGTA i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 771 106 + 4370 ATCTAGCAATTTGACAGATTCAGGAAT------TTGACAGTCTAGGCCTAGTTTTAAGTGGAATTTAAGGAGATGCTTTCTAAAACTTGaa-aaaatatttttaaaa-aagata i echTel1.scaffold_259995 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=12998.000000 s hg19.chrUn_gl000223 56240 71 + 180455 -CTTTCCCAATAG--AAAAAAAATTTTTAAACAACATGA------------AAGGATGGTAGAAAGGGGTTATTCggccatatgca s panTro2.chr12 183499 71 - 135371336 -CTTTCCCAATAG--AAAAAAATTTTTTAAACAACATGA------------AAGGATGGTAGAAAGGGGTTATTCggccatatgca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 220500 73 - 136387465 -CTTTCCCAATAGAAAAAAAAAATTTTTAAACAACATGA------------AAGGACGGTAGAAAGGGGTTATTCggccatgtgca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 192344 70 - 134511895 -CTTTCCCAACAG--AAAAAAAA-TTTAAAACAACATGA------------AAGGATGGTTGAAAGGCGTTATTCggccatgtgca i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 3948 44 - 51117 -TTTTGTAAAGAA--TAAAAAACTT----AAAAATAAGA------------AAGGATGGTAGA----------------------- i micMur1.scaffold_9962 C 0 C 0 s vicPac1.scaffold_11817 227 49 + 44753 -TCTTCCAAAGGG--CAAAAAAC---TTAAATAATTAGA-------------------GCAAAATGGTAGAGAG------------ i vicPac1.scaffold_11817 C 0 I 178 s felCat3.scaffold_141210 78168 23 - 81011 -ACTTCCAAAGGG--CAAAAAAACTT------------------------------------------------------------ i felCat3.scaffold_141210 C 0 I 2 s canFam2.chr26 3183193 44 + 42029645 -GTTTCCAAAAGG--CAAAAAAC---TTAAATAATAAGA-------------------ATACAAAG--------AAA--------- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 102252 69 - 3408981 -TTTTCCAAACGG--CAAACAAA-GTAAAAATAATACTGAGATGAGTATGAAAGAATGGTAAAGAGAGATTAT------------- i loxAfr3.scaffold_113 C 0 I 1829 s echTel1.scaffold_259995 877 67 + 4370 tttttCTAAAGAG--CAAAAAAC-TTACAACAAATACAGAGACCAGT----AAGAAAGGTAAAAAGAGAATATT------------ i echTel1.scaffold_259995 C 0 I 2664 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 6128 747 + 15804 I e oryCun2.chrUn0106 665869 338 + 1032594 I e otoGar1.scaffold_101698.1-26550 7109 410 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e cavPor3.scaffold_248 217828 20 + 667635 I e bosTau4.chr17 29956687 0 - 76506943 C e equCab2.chr8 64138289 8 - 94057673 I a score=123605.000000 s hg19.chrUn_gl000223 56311 242 + 180455 gtggttcacacctgtaatcccagcactttgggagaccaaagcgg--gaatcacaagg--tcagg---agtttgagaccagcctggccaacatggtgaaaccctgtctccactaaaaatacaaa------------------aaaaattagccgggcatggtggcatgtgcctgtagtcccagctgctcagaaagctgaggcaggagaatcgcctgaacctaggaggtggagtagtgagccaagatcgcaccactgcactccagtctg s panTro2.chr12 183570 242 - 135371336 gtggttcacacctgtaatcccagcactttgggagaccaaagcag--gaatcacaagg--tcagg---agtttgagaccagcctggccaacatggtgaaaccctgtctccactaaaaatacaaa------------------aaaaattagccgggcatggtggcatgtgcctgtagtcccagctgctcagaaagctgaggcagcagaatcgcctgaacctaggaggtggagtagtgagccaagatcgcaccactgcactccagtctg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 220573 242 - 136387465 gtggttcacacctgtaatcccagcactttgggaggccaaagtgg--aaatcatgagg--tccgg---agtttgagaccagcctggccaacatggtgaaaccctgtctccactaaaaatacaaa------------------aaaaattagccaggcatggtggcatgtgcctgtagtcccagctgctcagaaagctgaggcaggagaatcgcttcaacccaggacgtggagtagtgagccaagatcgcaccactgcactccagtctg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 192414 242 - 134511895 gtggtttacacctgtaatcccagcacttt-ggaggccgaagcaggcgaatcacaagg--tcagg---agtttgagaccagcctggccaacatggtgaaaccccgtctccactaaaaata-aaa------------------aaaaattggccgggcatggtggcatgtgcctgtagtcccagctgctgggaaggctgaggcaggagaatcgcttgaacccaggaggtggagtagtgagctgagatcgcaccattgcactccagtctg i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 7519 197 + 26550 gtggctcatgtctgtaaccacagcactctggaaggccaaggcaggtggactgttgtggctcaga---agtttgagaccagcctgagcaaga--atgagacccaatttctactaaaaaaaaaaaaaaagaaaaagaaaaaagaaaaactagctaggctttgtgatgggcaccggtggtcccagctgctaaagaggctgaggca----------------------------------------------------------------- i otoGar1.scaffold_101698.1-26550 I 410 C 0 s cavPor3.scaffold_248 217848 140 + 667635 --------------------------tttttGAGAC---AGTGG--GGATGAGAGGG--TCATATATAGTTCAAG-CAGGCCTTGAActcactgtgtagcccaggctggcctcaaactcatga------------------caaa------------------------cctcctgcctcagc--------------------------ctccttaatgttggaattacaggcatgtgctac------------------------- i cavPor3.scaffold_248 I 20 C 0 e echTel1.scaffold_259995 944 2664 + 4370 I e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e vicPac1.scaffold_11817 276 178 + 44753 I e micMur1.scaffold_9962 3992 0 - 51117 C e felCat3.scaffold_141210 78191 2 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 6128 747 + 15804 I e oryCun2.chrUn0106 665869 338 + 1032594 I e loxAfr3.scaffold_113 102321 1829 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e bosTau4.chr17 29956687 0 - 76506943 C e equCab2.chr8 64138289 8 - 94057673 I e canFam2.chr26 3183237 0 + 42029645 C a score=-20171.000000 s hg19.chrUn_gl000223 56553 35 + 180455 ggtgaca------------------gaacaagactctatctcaaaa-----------------caa----------aaaa s cavPor3.scaffold_248 217988 7 + 667635 ---------------------------------------------------------------caG----------AAAG i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29956687 34 - 76506943 -----------------------------AAGATGTTTTCCAAAGG-----------------TAAAAAACTTAGTAAAA i bosTau4.chr17 C 0 C 0 s otoGar1.scaffold_101698.1-26550 7716 10 + 26550 ----ACC------------------TAA------------------------------------------------AAAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 192656 33 - 134511895 ggtgacct-----------------taacgagactccgtctcaaaa------------------------------aaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 220815 32 - 136387465 ggtgaca------------------gaacaagactccatctcaaaa------------------------------aaaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 183812 37 - 135371336 ggtgaca------------------gaataagactctatctcaaaa-----------------aaga--------caaaa i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 666207 63 + 1032594 -------GTTCAAAAAAGAAAACTTTAAAAAGATATTTTCTAAAGAGCAAAAACATGAATAATAAG----------AAAG i oryCun2.chrUn0106 I 338 C 0 e echTel1.scaffold_259995 944 2664 + 4370 I e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e vicPac1.scaffold_11817 276 178 + 44753 I e micMur1.scaffold_9962 3992 0 - 51117 C e felCat3.scaffold_141210 78191 2 - 81011 I e tupBel1.scaffold_103331.1-57811 3310 5857 - 57811 I e sorAra1.scaffold_196587 6128 747 + 15804 I e loxAfr3.scaffold_113 102321 1829 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I e canFam2.chr26 3183237 0 + 42029645 C a score=-4784.000000 s hg19.chrUn_gl000223 56588 38 + 180455 aacaaaaaaaacaagaaaGG----GATTATTC-ATATACTTCA s oryCun2.chrUn0106 666270 28 + 1032594 GATGCCA-------GGAAGA----GAGTA----TCACACTCCA i oryCun2.chrUn0106 C 0 C 0 s panTro2.chr12 183849 38 - 135371336 aacaaaaaaaacaagaaAGG----GATTATTC-ATATACTTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 220847 32 - 136387465 aacacaaaa------aaaGG----GATTATTC-ATATACTTCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 192689 38 - 134511895 aaaaaaaaaaaaaggaaaGG----GATTATTC-ATATACTTCA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 7726 37 + 26550 AATAGGAA-----AGGATGGTAGAGATCATTC-TTAAACTTCA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s bosTau4.chr17 29956721 37 - 76506943 AAAAAAAG--GTAGAAAAGA----GGTAATTCCATATACTCCA i bosTau4.chr17 C 0 C 0 s cavPor3.scaffold_248 217995 31 + 667635 AACAGTA-------GTAACA----GATTACTC-TTACACTTCA i cavPor3.scaffold_248 C 0 C 0 s echTel1.scaffold_259995 3608 28 + 4370 aataaaaaaTTAAGTAAAGA----AACTAATA----------- i echTel1.scaffold_259995 I 2664 C 0 s tupBel1.scaffold_103331.1-57811 9167 24 - 57811 --------------GAAAAA----TATCATTC-TTATACTCCA i tupBel1.scaffold_103331.1-57811 I 5857 C 0 s tarSyr1.scaffold_38741 13052 6 + 15302 -------------------------------------ACTCCT i tarSyr1.scaffold_38741 N 0 C 0 s micMur1.scaffold_9962 3992 18 - 51117 ------------------------GATTATTT-CTACATTCTA i micMur1.scaffold_9962 C 0 C 0 s canFam2.chr26 3183237 19 + 42029645 ------------------------GAACATTCAATGTACTCCG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 78193 29 - 81011 ----------ATAAGAGAGA----GACCATTCAATGTACTCCG i felCat3.scaffold_141210 I 2 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e vicPac1.scaffold_11817 276 178 + 44753 I e sorAra1.scaffold_196587 6128 747 + 15804 I e loxAfr3.scaffold_113 102321 1829 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=14325.000000 s hg19.chrUn_gl000223 56626 46 + 180455 TGGTGTCTAA----TCTATA-GAA-AAAAACA-CAAAGGAACTTA-----------ATTTAAAA--- s otoGar1.scaffold_101698.1-26550 7763 45 + 26550 TGGTGTCTAA----TTTATT-AAA-AAAACC--CAAGAGATTCTA-----------ATTTAAAA--- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 192727 47 - 134511895 TGGTGTCTAA----TCTGCAGGAA-AAAAACA-CAAAGGAACCTA-----------ATTTAAAA--- i rheMac2.chr11 C 0 C 0 s panTro2.chr12 183887 46 - 135371336 TGGTGTCTAA----TCTATA-GAA-AAAACCA-CAAAGGAACTTA-----------ATTTAAAA--- i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29956758 40 - 76506943 TG---TCTAA----GCTACA-GAA-AAAGCA--CAACAGAACTTG-----------ACC--AAC--- i bosTau4.chr17 C 0 I 2 s felCat3.scaffold_141210 78222 45 - 81011 TGGTATCTAA----TCTACA-GGA-AAAGTA--CAACAGAACCTA-----------ATTTTAAA--- i felCat3.scaffold_141210 C 0 I 2 s canFam2.chr26 3183256 45 + 42029645 TGGTGTCTAA----TCTACA-GGA-AGAGCA--CCGCAGAACCCA-----------ATCTTACA--- i canFam2.chr26 C 0 I 2 s oryCun2.chrUn0106 666298 41 + 1032594 TGGTGTCTAA----TCTATA-GAC-ACA-----CAA-AGAACCAA-----------ACTGAAAA--- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 218026 42 + 667635 ATGTGTCTAA----ACTATG-GAA-AAA-----CAGCAGAACCTA-----------GATTAAAA--- i cavPor3.scaffold_248 C 0 C 0 s micMur1.scaffold_9962 4010 45 - 51117 TGGTGTCTAA----ACTATA-GAA-TAAAAC--CAATAGATTCTA-----------ATTTTAAA--- i micMur1.scaffold_9962 C 0 C 0 s tarSyr1.scaffold_38741 13058 17 + 15302 TGGACTCT-------------GAA-AA----G-CAA------------------------------- i tarSyr1.scaffold_38741 C 0 I 1215 s tupBel1.scaffold_103331.1-57811 9191 44 - 57811 TGTTGTGTAA----TATATA-GAA-AAAAAA--TATCAGAATCTA-----------ACTTTAA---- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s ponAbe2.chr12 220879 46 - 136387465 TGGTGTCTAA----TCTATA-GAA-AAAAACA-CAAAAGAACTTA-----------ATTTAAAA--- i ponAbe2.chr12 C 0 C 0 s echTel1.scaffold_259995 3636 46 + 4370 --TTATCTCTTGCTTCTAAA-AGA-AAAGAAA-AATGAGAAGAAA----------------ATAAAA i echTel1.scaffold_259995 C 0 I 5 s loxAfr3.scaffold_113 104150 63 - 3408981 --gtgtatattctcactgca-ata-aaaTAAATAATAAGCAAACATCATCCATGTTGTTTCAAAAAA i loxAfr3.scaffold_113 I 1829 I 5 s vicPac1.scaffold_11817 454 34 + 44753 --------------CCCaca-aaacaaaaca--aaacaaaacaaa-----------aac--aaa--- i vicPac1.scaffold_11817 I 178 I 2 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e sorAra1.scaffold_196587 6128 747 + 15804 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=83629.000000 s hg19.chrUn_gl000223 56672 43 + 180455 GGGAGGATAAGGATAAA----TTGGGAGAAAT----GAC---GGCTCCATTTT-C s rheMac2.chr11 192774 43 - 134511895 GGGAGGATAAGGATAAA----TTGGGAGAAAT----AAT---GGCTCCATTTT-C i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 220925 43 - 136387465 GGGAGGATAAGGATAAA----TTGGGAGAAAT----GAC---GGCTCCATTTT-C i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 183933 43 - 135371336 GGGAGGATAAGGACAAA----TTGGGAGAAAT----GAC---GGCTCCATTTT-C i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4055 47 - 51117 GAGAAGACAAGTACAAATTATTTGCGAGATAT----CAT---GGCTCCATTTT-C i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 7808 29 + 26550 GGGAGGATAAGGACAAATTATTTGGGAGA-------------------------- i otoGar1.scaffold_101698.1-26550 C 0 I 298 s tupBel1.scaffold_103331.1-57811 9235 41 - 57811 --GAGGTTAAAGACAAA----TTGAGGGACAT----AAT---GGCTCCATTTC-C i tupBel1.scaffold_103331.1-57811 C 0 I 859 s cavPor3.scaffold_248 218068 36 + 667635 GGAATGGTAT-----------CTGAGAGAAAT----GAT---GGTTTCATTTT-C i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 666339 35 + 1032594 GAGAGAAAAT-----------TTGAGAAAAA-----AAT---GACTCCATTTT-C i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 490 47 + 44753 GGGAAGAAATGGACAAAGGGTTTGGGACGGAT----GAT---GACTGCATTTT-C i vicPac1.scaffold_11817 I 2 C 0 s bosTau4.chr17 29956800 46 - 76506943 GGGGAGAAGTGGACCAACAGTTTGGGAGGAAT----GAT---AA-TCCACTTT-C i bosTau4.chr17 I 2 C 0 s canFam2.chr26 3183303 51 + 42029645 GGGAAGAAAAGGACCGAGTGTGTAGGAGGAATTGGGGAA---GA-CTTCCTTTCC i canFam2.chr26 I 2 C 0 s felCat3.scaffold_141210 78269 46 - 81011 GGGAGAAAAAGGACCAATTGTTTGGGAGGAAC----GAG---CA-ACTGCTCT-C i felCat3.scaffold_141210 I 2 C 0 s echTel1.scaffold_259995 3687 43 + 4370 GGGATGGTAAGGACAAA----CTGGGTGGACT----GAA---GATTCCATTTT-T i echTel1.scaffold_259995 I 5 C 0 s loxAfr3.scaffold_113 104218 46 - 3408981 GGGGGAATAAGGATACA----TTGTTTCAGAA----GAACACGATTCCACCTT-T i loxAfr3.scaffold_113 I 5 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e speTri1.scaffold_84809 998 5187 - 11041 I e sorAra1.scaffold_196587 6128 747 + 15804 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=-53621.000000 s hg19.chrUn_gl000223 56715 33 + 180455 TA-ATATAATGAGACTGAA-----CAGATTG----GGGC------------------G--------------TTT s rheMac2.chr11 192817 46 - 134511895 TA-ATATAATGAGACTGAA-----CAGACTG----GGGC------------------TTTGGAGGGT-GGTCTTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 220968 33 - 136387465 TA-ATATAATGAGACTGAA-----CAGATTG----GGGC------------------T--------------TTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 183976 33 - 135371336 TA-ATATAATGAGACTGAA-----CAGATTG----GGGC------------------G--------------TTT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4102 46 - 51117 TA-ATACAATGAGACCAAA-----TGGAGTG----GGGC------------------TTTGCAGGTG-GTCCTCT i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8135 26 + 26550 TA-ATATAATGAGATCAAA-----TAGAGTG----G--------------------------------------- i otoGar1.scaffold_101698.1-26550 I 298 C 0 s tupBel1.scaffold_103331.1-57811 10135 47 - 57811 CA-GTACAGTGAGACTGAA-----CAGAGTG----GGGC------------------TTTGCAGGGTCCTCCTCT i tupBel1.scaffold_103331.1-57811 I 859 C 0 s cavPor3.scaffold_248 218104 28 + 667635 TG-TTATAGAGAGAATGAA-----CACAAAG----G------------------------------------CT- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6185 22 - 11041 AG-TACT-----GATTCTG-----AACAGAG----G------------------------------------C-- i speTri1.scaffold_84809 I 5187 C 0 s oryCun2.chrUn0106 666374 28 + 1032594 TA-AAATAACGAGGCTGAA-----AAGTGCG----G------------------------------------TT- i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 537 31 + 44753 TG-GC---ATGAGACTGAACTCTGCAGGGCA----GGTT------------------------------------ i vicPac1.scaffold_11817 C 0 I 36584 s bosTau4.chr17 29956846 29 - 76506943 TG-ACATAATAAGGCTGAA-----CAGAGAG----GGTT------------------------------------ i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3183354 46 + 42029645 GG-CCGCAAGGAGACTGAA-----CAGAGTG----GGCT-CCACAGGGTACTTCTCT------------------ i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 78315 50 - 81011 AG-CTGTACAGAGGCTGAA-----TGGAGTGCAGTGGGC-CCACGGGGTACTTCTCT------------------ i felCat3.scaffold_141210 C 0 C 0 s echTel1.scaffold_259995 3730 46 + 4370 -A-ATATAATGATAATGAA-----CAGAATA----AGACTTCACAGAATACTCTTCT------------------ i echTel1.scaffold_259995 C 0 C 0 s loxAfr3.scaffold_113 104264 47 - 3408981 -GTATGTAAGGACAATGAA-----CAGAGTG----GGACTTCCCAAGGTACTCCTCT------------------ i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e sorAra1.scaffold_196587 6128 747 + 15804 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=32500.000000 s hg19.chrUn_gl000223 56748 33 + 180455 GGGCATCAGAGA-ACCCAAACTGAA-GACAAA-A-TC s rheMac2.chr11 192863 34 - 134511895 GGGCATCAGAGATACCCAAATTGAA-GACAAA-A-TC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221001 33 - 136387465 GGGCATCAGAGA-ACCCAAACTGAA-AACAAA-A-TC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184009 33 - 135371336 GGGCATCAGAGA-ACCCAAATTGAA-GACAAA-A-TC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4148 34 - 51117 AAGTACCAGAGACACCCACCGTGAG-GAAAAA-A-TC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8161 32 + 26550 --GCACCAGAGATACCCACACTAAT-GAAAAA-G-TA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 10182 35 - 57811 GGGCAACAGTGATATCCAAACTGAG-GACAAATA-GC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218132 31 + 667635 --TTGCACGGTGTTCCTA-ATTTGA-AGAAAA-A-CT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6207 29 - 11041 --TCACAAGATGCTCATA---TGAA-GGGAAA-A-TT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666402 32 + 1032594 --TCTCAAGGTATACTTAAATTGAG-GGGAAA-A-TC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29956875 33 - 76506943 TCACATCAGAGACACCCAAAGCGAG-GAAAAA-TA-- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3183400 30 + 42029645 GGGCATC--AGATGCCCAAATGAAA-GAAAAG-T--- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 78365 31 - 81011 GGGCATC--AGACACCCCACTGAGGCGAGAAA-G--- i felCat3.scaffold_141210 C 0 C 0 s echTel1.scaffold_259995 3776 25 + 4370 GGGCATCA---------AAGATGAG-GGGAAA-A-TT i echTel1.scaffold_259995 C 0 C 0 s loxAfr3.scaffold_113 104311 34 - 3408981 GGGCATCACAGACACCCAAAATGAG-GGAAAA-A-TG i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e sorAra1.scaffold_196587 6128 747 + 15804 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I e equCab2.chr8 64138289 8 - 94057673 I a score=119097.000000 s hg19.chrUn_gl000223 56781 35 + 180455 AAGATGCTTCAATGTACAAACGG-AGGTGTCTTTGA s rheMac2.chr11 192897 35 - 134511895 GAGATGCTTCAATAGACAAACGG-AGGTGTCTTTGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221034 35 - 136387465 AAGATGCTTCAATGTACAAACGG-AGGTGTCTTTGA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184042 35 - 135371336 AAGATGCTTCAATGTACAAACGG-AGGTGTCTTTGA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4182 35 - 51117 AGAATTCTTGAATTTACAAACAG-AAGTATCTTTGA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8193 35 + 26550 AAAATTTGTGAATATAAAAGCAC-AGGTTTCTTTGA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 10217 35 - 57811 AAAATTCTTGAGTGTACAAGCAG-AGGTACCACTGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218163 35 + 667635 AGAATCCCAGCATTTACAAGTAG-GGATGTCTTTGA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6236 34 - 11041 AAAATGCTGGAATGCACAAGCAG-GT-TAACTTTGA i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666434 35 + 1032594 AAAAGGTTTGAGTGTGCAATCAG-TGGTGTCTTTGA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64138297 35 - 94057673 AGAATTCTTGAATGTACCAGCAGCA-GTGTCTCTGA i equCab2.chr8 I 8 C 0 s felCat3.scaffold_141210 78396 33 - 81011 AAACCTCCTAACTGTACAAGCAG-A--CGTGTCTAA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3183430 34 + 42029645 AAAGCTCTTGAATATACAAGCAG-A-GCATGTTTGC i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29956908 32 - 76506943 --AAGCCCTGATGGT-CAAGCAC-AGGTGTCTTTGA i bosTau4.chr17 C 0 C 0 s sorAra1.scaffold_196587 6875 24 + 15804 -----------ATGCTCAAGCAG-AGGCATCATTaa i sorAra1.scaffold_196587 I 747 C 0 s echTel1.scaffold_259995 3801 29 + 4370 ATAATTTTT----TTACACAGAG-A--TATCTCTGA i echTel1.scaffold_259995 C 0 C 0 s loxAfr3.scaffold_113 104345 31 - 3408981 AAAACTCTTGA--GTACAAGGAG-A--TGTCTCTGA i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23346 6 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e choHof1.scaffold_59997 11842 6 + 12755 I a score=194705.000000 s hg19.chrUn_gl000223 56816 151 + 180455 CCACAG-GGGAAGGAGGGACTG-AATGGGATCAAACATGTGAG----AGGACAGAA--TACCAAACAAGAAGTCAAGGTCCCAGATGTTACAGA----GAAT-----AACGTC--ATGGCCAAGATAAG---CAGG--ACACATTTCATTTT--------AAGCTAC----------------------------A----A----AGAAGCTACGTCTA s rheMac2.chr11 192932 149 - 134511895 CCACAG-GGGAAGCAGGGACTG-AAAGGGATTAAACATGT--G----AGGACAGAA--TACCAAACAAGAAGTCAAGGTCCTAGATGTCACAGA----GAAT-----AACGTC--ATGGCCAAGATAAG---CAGG--ACACATTTCATTTT--------AAGCTAT----------------------------A----A----AGAAGCTACGTCTA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221069 151 - 136387465 TCACAG-GGGAAGGAGGGACTG-AATGGGATCAAACATGTGAG----AGGACAGAA--TACCAAACAAGAAGTCAAGGTCCTAGATGTTACAGA----GAAT-----AATGTC--ACGGCCAAGATAAG---CAGG--ACACATTTCATTTT--------AAGCTAC----------------------------A----A----AGAAGCTACGTCTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184077 151 - 135371336 CCACAG-GGGAAGGAGGGACTG-AATGGGATCAAACATGTGAG----AGGACAGAA--TACCAAACAAGAAGTCAAGGTCCCAGATGTTACAGA----GAAT-----AACGTC--ATGGCCAAGATAAG---CAGG--ACACATTTCATTTT--------AAGCTAC----------------------------A----A----AGAAGCTACGTCTA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4217 163 - 51117 GCATGG-GGGAAGGAGGGACAG-AAGTAG-TCAAATATGTCAG----GGGACAGAA--TACCAAACAAGAATTCAAAGTCTTAGATGTGACAGACAGGGAATAGCAAAACATC--ATGGTTCACATAAG---TAGG--ACACATTTCATTTT--------AAGTTAC----------------------------A----AAAAAAGAAACCACATCTA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8228 159 + 26550 ACATAG-GGGAAGGAGGGACAG-AATTAGAATAAATATGTCAA----GGGACAGAA--TACCAAATAAGAAGTCCAAGTCCTAGATATGACAGGCAGGGAAT-----AATGTC--ATGGGTCAGATAAG---TAGG--ACACATTTCACTTT--------AAGTTAC----------------------------A----AAAATAAAAGCCATATTTG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 10252 106 - 57811 CCACAG-GGTAATGAGAGAC----GTGAGATT--ACACGTCAG----GGGATAGAA--TACCAGACAGG---------------------CATG----GAAC-----AACGCC--ACCACTCGGATAAG---CA-----------------------------CAAC----------------------------A----A----AGAAGCCATATCTA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218198 119 + 667635 CC-CAC-GGGAAGG-----------------------------------------A--GATCAAACAGGAAG---------------CCCAACACTAGAAAA-----ATTCTC--AG---------------GCAG--ACATATTTCGTTTT--------AAACTAAAGACGATTTTATTCATCTTTATTCGTTTA----A----ATAAAAGACAACTA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6270 152 - 11041 CCACAG-GGGAAAGAAGGACAG-ATCA------CACACACCAA----AGGAGAGCA--GATCACACAATAAGTATGAGCCCT-GGATTCCAAGGCAGGGAAT-----AACATC--AGGACTCTGAGGAA---GAAG--ACACGCTTAATCCT--------AAACTGCAAAC------------------------C----A----AGAAGCCACATCTG i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666469 150 + 1032594 CCATAT-AGGAAGGAGGTACAG-AGGAAA---TCAAACGTCAG----GAGATGGAA--TACCAAGCAAGCAGTCCAAGTCCTAGAAGTGAAATGCAGGGAAT-----AATGCC--AGGGATCACA-------TAAGCTACATATTTGATTTT--------AAGCTAT----------------------------G----A----AGAAGCCATATCTA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64138332 147 - 94057673 CCACAG-GGGAGGGGAGGCCAG-AGGGAGATGAAGCACGTGAG----G-GACAGGA--CACCCCATGAGAAGTCCAGG-CCCAGATGCTGCAGGCGGGGAAG-----AACACC--GCGGCCCAGACAAATGTCTGC--------------TT--------AAGCTAC----------------------------AAAC-A----AGAGGCCACATCTG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 78429 124 - 81011 CTGTAG-GTGAGCAGAGGACA----GAAGATTAAACATGT-----------CAGAA--TA--TGA-AAGAAGCCAAAGTTCCAGACTTGGCAGACAGGGAGT-----AGT-TC--ATGGCCTAAACAAG---CTGG-----------------------------------------------------------AAGCAA----AAAAGCCACACCTA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3183464 143 + 42029645 CC-TAG-GTGAACAGAGAACA-----AAGACCAAACGT-T-----------CAGAA--TCCTTGACAAGAAGTCAAAGTCCCACACTTGACAGTCA--AAAC-----AAT-TC--ATGGCCTGGTCATG---CTGG--AAATATTTTGCTTT--------GAGCTAC----------------------------AAGCAA----AGAAGCCACATCTA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29956940 160 - 76506943 CCACAGAGAGAAGGGAGGACAA-AAGGAGATTAACCACATCAG----GAGACAGAA--TACCTAACAAGAAGTCAAAGTCCCAGATGTGAAAGACTGGGAAT-----AACGTC--ATGGGCCAAACCAG---CTGG--AAACATTTCACTTC--------AAGCTAC----------------------------GAGCAA----AGAAGCCACATGTA i bosTau4.chr17 C 0 C 0 s sorAra1.scaffold_196587 6899 132 + 15804 tcagag-gagaaaggagaaccgaaaaaagaaaaaacag-------------caaa-------caaacaagaGGCAAAGTCTTAGGTTTGATAAAGA--GAAC-----TAT-----ACAGCT----CAAG---CTGA---AACAGTTCATTTA--------TGGTTAC----------------------------A----A----AGAAGCTATATTCA i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 104376 153 - 3408981 CCATAG-AAGAAGCTGCGTCAT-AAGAAGATTAAATATAGCAG----GGGACAGAA--CACCAAACAGGAAGTCAAAGTCCTAGGTGTGACGGACAGGGGCT-----AACTTC--TCAGCCCAGATAAG---CAGG---AATACTTTACTTT--------AAGCTAC----------------------------G----A----AAAACCCACATCT- i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 3830 132 + 4370 TGATAA---------TCGTCAT-AAAGAGATTAAATATACCA-----GGGACAACA--CACCAGACAAGAAGTCAAAGTCCTAACTGTGAGAGACATGGGCT-----ACCTTC--ATGATCCAGATTAG---TAGG---AATATTTCATTTT--------AAGCTAC----------------------------A----A----A------------- i echTel1.scaffold_259995 C 0 C 0 s choHof1.scaffold_118132 1349 154 - 6671 ----------------CTGCAG-AAGAAGAGGAGACATGAGGGTGCTGGGAAGAAAGGAACCAAGCAAGAAACCAAGGTCCTAGATGAGACAGACTCTGAGA-----AGATCCAGAAGATTGAAAAAAG---TA-G---AAGACATCATCTTTCAATAGCAGGCGAA----------------------------G----A----GCAGCCTAAATAAA i choHof1.scaffold_118132 n 6 n 6 e dasNov2.scaffold_7587 23346 6 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I a score=318543.000000 s hg19.chrUn_gl000223 56967 62 + 180455 AATGTGACTTAC-----------TTGAG-T-------AGCTAATGTCAATTGTTCTGAGGCACCACCAAAGGTTTAGAGAT s rheMac2.chr11 193081 62 - 134511895 AATGTGACTTAC-----------TTGAG-T-------AGCTAATGTCAGTTGTTCTGAGGTACCACCGAAGGTTTAGAGAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221220 62 - 136387465 AATGTGACTTAC-----------TTGAG-T-------AGCTAATGTCAATTGTTCTGAGGAACCACCAAAGGTTTAGAGAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184228 62 - 135371336 AATGTGACTTAC-----------TTGAG-T-------AGCTAATGTCAATTGTTCTGAGGCACCACCAAAGGTTTAGAGAT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4380 62 - 51117 AATGTGATTTAC-----------CCGAG-T-------AGCTGATGTCAATTGTTCTGAATCACTACCAAAAGTTTAGAGGT i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8387 48 + 26550 AATGTGATTTAC-----------CTGAG-T-------ACCTGATGTCAGAAG--------------CAAAAGTTTAGAGTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 10358 60 - 57811 ATTATGATTCAT-----------CT--G-T-------ATCTAAGGGCAATTGTTCTAAATCTCCAAGAAGGGCTTAGCAAT i tupBel1.scaffold_103331.1-57811 C 0 I 7004 s cavPor3.scaffold_248 218317 61 + 667635 AAATTGATTTAC-----------CTGAG-T-------AGCTGATGTCAACTGCTCTGAATCAGCAC-AACGGTTTAAAGAT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6422 61 - 11041 ACTGGGATTTAT-----------CTAAG-T-------AGCTGTGGTCAACTGCTCCAAATCACCAC-ACAGGTATAGGGAT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666619 63 + 1032594 AATGTGATACAC-----------CTGAGTT-------AGCTAATATCAACTCATCTGAATCACAACTAAAAATCTGGAGAT i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64138479 62 - 94057673 AGTGCGATTTAC-----------CTGAG-G-------AGCTCACGTCAGTTGTTCTGAATCACCACCAAAGCTTTGGAGAT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 78553 56 - 81011 AAGACA-----------------CAAAG-T-------GGCTCACATCAGGTGTTCTGAAACCCCACCACGGGGCCAGAGAT i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3183607 58 + 42029645 AGCATAAT---------------TGGAG-T-------AACTCCTGTCAGTGGTTCCGAATCACCACTAAAGGTTTAGAGAT i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29957100 60 - 76506943 A-TGTGATTCAC-----------TTCAG-T-------AGCTCATGTTAACTGTCCTGAATCACCGCTAAGGGTTT-GAGAT i bosTau4.chr17 C 0 C 0 s sorAra1.scaffold_196587 7031 79 + 15804 A-TGTAACCTACTGAGAAATTCATTTAG-TTATTATAAACTCATGTTAGCTATTCTGAATGCATACCAAAGGTTTAGCAAA i sorAra1.scaffold_196587 C 0 C 0 s loxAfr3.scaffold_113 104529 55 - 3408981 -------TTTAC-----------CTAGG-C-------AGCTCATGTCAACTGTTCTCAATCACCACCAAAGCTTTAGAAAT i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 3962 40 + 4370 -----------------------CAAAG-A-------AGTC-------ACTGTTCTAAATAACCACC---GTTTTAGAGAT i echTel1.scaffold_259995 C 0 C 0 s dasNov2.scaffold_7587 23352 59 + 154172 AGTGTGATTTCC-----------CTAAG-T-------AGCTCATGTCAATTGTTCTAAATTACTGCCAAAGatttaaa--- i dasNov2.scaffold_7587 I 6 C 0 s choHof1.scaffold_59997 11848 59 + 12755 AGTGTGGTTTCC-----------CTAAT-T-------AGCTCACGTCAATTGTTCTAAATCACCACCAAAGATTCAGA--- i choHof1.scaffold_59997 I 6 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I a score=172952.000000 s hg19.chrUn_gl000223 57029 35 + 180455 TTTGAAAAGAG---------ATCCTT-AAAGCACATTTCAAAGA-T s rheMac2.chr11 193143 35 - 134511895 TTTGGAAAGAG---------ATCCCT-AAAGCACATTTCAGAGA-G i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221282 35 - 136387465 TTTGAAAAGAG---------ATCCTT-AAAGCACATTTCAGAGA-T i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184290 35 - 135371336 TTTGAAAAGAG---------ATCCTT-AAAGCACATTTCAGAGA-T i panTro2.chr12 C 0 I 171 s micMur1.scaffold_9962 4442 35 - 51117 TTTGAAAAGAG---------CTGTCT-AAAGCACATTTCAAAGA-T i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8435 35 + 26550 CTTGAAAAAAA---------CTCTCT-AAAGCATATTTCAAAGA-C i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 17422 35 - 57811 TTTGAGAAGAG---------CTCTCG-AAAGTTTATTTCAAAGA-T i tupBel1.scaffold_103331.1-57811 I 7004 C 0 s cavPor3.scaffold_248 218378 34 + 667635 TCTGAAAAGAG----------ATCCT-AAGGCACATTTCACAGA-C i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6483 25 - 11041 TTTGAAAAGA--------------------GCAGATTTCAAAGG-T i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666682 33 + 1032594 TTTAAAGAGA-----------CCTCT-AAGGCAGATTTTGAAAA-C i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64138541 35 - 94057673 TTTGAGAAGAG---------CTCGCT-AAAGCACATTTCAAAGA-C i equCab2.chr8 C 0 I 1 s felCat3.scaffold_141210 78609 35 - 81011 TGTGAAAAGAG---------GTCTCA-AAAGCACATTTCAGAGA-T i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3183665 24 + 42029645 TTGGAAGAGAG---------CTCTCA------------CAGAAG-T i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29957160 35 - 76506943 TTTGAACAGAG---------CCCTCT-AAGGCACATTTCAAGGA-T i bosTau4.chr17 C 0 C 0 s sorAra1.scaffold_196587 7110 33 + 15804 TTTGAA-AGAT---------CTCTCT--AAGCACATTTCGAAGA-T i sorAra1.scaffold_196587 C 0 N 0 s loxAfr3.scaffold_113 104584 35 - 3408981 TTTGAAAAGAG---------CCCTCTAAAAGCAGATTTTAAGAT-- i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 4002 34 + 4370 TTTGAAAAGAG---------CTGTTT-GAAGTATATTTTAAGTT-- i echTel1.scaffold_259995 C 0 C 0 s dasNov2.scaffold_7587 23411 43 + 154172 ttaaaaaaaaaaaaaaCAACCTCTCC-TGAGCCCATTTCAGAGA-- i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11907 35 + 12755 TTTTAAAAAAG---------CTCACT-TGAGCCCATTTCAAAGAT- i choHof1.scaffold_59997 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I a score=-76319.000000 s hg19.chrUn_gl000223 57064 93 + 180455 Gccaacccatcactgaccagccaacccatcaatgaccagcccacccgtcactgaccagccaacccatcactgaccag-cccacccatcactgac---- s panTro2.chr12 184496 93 - 135371336 gccaacccatcactgaccagccaacccatcaatgaccagcccaccCGTCACTGACCAGCCAACCCATCACTGACCAG-CCCACCCATCACTGAC---- i panTro2.chr12 I 171 C 0 s equCab2.chr8 64138577 9 - 94057673 GCGA-------------------------------------------------------------------------------------CACAC---- i equCab2.chr8 I 1 C 0 s felCat3.scaffold_141210 78644 9 - 81011 GTCA-------------------------------------------------------------------------------------TAAAC---- i felCat3.scaffold_141210 C 0 I 4 s bosTau4.chr17 29957195 9 - 76506943 GCCA-------------------------------------------------------------------------------------ACCAC---- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3183689 5 + 42029645 -----------------------------------------------------------------------------------------CAAGC---- i canFam2.chr26 C 0 I 12 s tupBel1.scaffold_103331.1-57811 17457 2 - 57811 --------------------------------------------------------------------------------------------AC---- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s ponAbe2.chr12 221317 17 - 136387465 ----------------------------------------------------------------------------G-CCAACCCATCACTGAC---- i ponAbe2.chr12 C 0 C 0 s loxAfr3.scaffold_113 104619 21 - 3408981 ----------------------------------------------------------------------------G-TCAACCCATCACTGACCAAC i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 4036 21 + 4370 ----------------------------------------------------------------------------GCCCAATTCATCAATGACCAA- i echTel1.scaffold_259995 C 0 C 0 s dasNov2.scaffold_7587 23454 21 + 154172 ----------------------------------------------------------------------------A-TCAACCCATCGTGAACACAA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11942 21 + 12755 ----------------------------------------------------------------------------G-TCAACCAAGCATGAACCCAT i choHof1.scaffold_59997 C 0 C 0 e speTri1.scaffold_84809 6508 0 - 11041 C e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 4477 0 - 51117 C e oryCun2.chrUn0106 666715 0 + 1032594 C e otoGar1.scaffold_101698.1-26550 8470 0 + 26550 C e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I e rheMac2.chr11 193178 0 - 134511895 C e cavPor3.scaffold_248 218412 0 + 667635 C a score=-143316.000000 s hg19.chrUn_gl000223 57157 43 + 180455 tagccca-ccCGTCAC-----------TGACCAG----ATGACATGGGGCTT--CTGCTCT s rheMac2.chr11 193178 41 - 134511895 --GCCAA-CCCATCAG-----------TGACCAG----ATGACACGGGACTT--CCGCTTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221334 43 - 136387465 CAGCCCA-CCCGTCAC-----------TGACCAG----ATGACACAGGGCTT--CTGCTCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184589 43 - 135371336 TAGCCCA-CCCGTCAC-----------TGACCAG----ATGACATGGGGCTT--CTGCTCT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4477 43 - 51117 --GCGAA-CCCATCAC-----------TGACCAA----CTGAGATTGAACTTTTCTACTTT i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8470 38 + 26550 --ACAAA-CCCATTGC-----------TGACCAG----CTAAGACTAAA-----CTGCTTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 17459 37 - 57811 CAACACA-CTCCTTAC-----------TAACAGG----CTGA------GCTT--TTACTTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218412 39 + 667635 ---AACA-CTCATCAC-----------TGCCCAG----CAGAGATCAGGCCT--TTT-TGT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6508 39 - 11041 ---TCCAGACCAATAC-----------TACTC-G----CTCAGGCTGGACTT--CTA-CTT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666715 37 + 1032594 ---AGAG-CACATCAC-----------TGAGCAG----AAATGACTGAGCTA--C---CTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29957204 27 - 76506943 ---------------------------CACCCTG----CTGAGAATGACTT---CCACCTT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3183706 31 + 42029645 ------------------------CCCTGATCAG----CTGAGACTGAATTT--CTGCTCT i canFam2.chr26 I 12 C 0 s felCat3.scaffold_141210 78657 20 - 81011 ---------------------------TGACCAA----CTGAGACTGAATT---------- i felCat3.scaffold_141210 I 4 C 0 s equCab2.chr8 64138586 27 - 94057673 ---------------------------TGA-CAG----CTGAGAGTGAACGT--CCACCCT i equCab2.chr8 C 0 C 0 s eriEur1.scaffold_223506 429 43 - 19967 ------------taacTCAAAAGTCATAAACCAAAGGCCTAAGATCTTGTTT--CCT---- i eriEur1.scaffold_223506 N 0 N 0 s loxAfr3.scaffold_113 104640 20 - 3408981 ---------------------------------------TGAGACTGAACTT--CTACCTT i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 4057 13 + 4370 ---------------------------------------------TGGACTT--CC-CCCT i echTel1.scaffold_259995 C 0 C 0 s dasNov2.scaffold_7587 23475 20 + 154172 ---------------------------------------TGAGATTGTATTT--CCACCTT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11963 19 + 12755 ---------------------------------------TGAGACTA-ACTT--TTACCTT i choHof1.scaffold_59997 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I a score=475920.000000 s hg19.chrUn_gl000223 57200 67 + 180455 CTCCCATCTGCCT-GGTTCTCATACACTCACCTGGAGAATCTGAACTTGGAA---TTTCTCCATCTCCTAC s rheMac2.chr11 193219 67 - 134511895 CTCGCATCTGCCT-GGTTCTCACACACTCACCTGGAGAATCTGAACTTGGAA---TTTCTCCATCTCCTAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221377 67 - 136387465 CTCCCATCTGCCT-GGTTCTCATACACTCACCTGGAGAATCTGAACTTGGAA---TTTCTCCATCTCCTAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184632 67 - 135371336 CTCCCATCTGCCT-GGTTCTCATACACTCACCTGGAGAATCTGAACTTGGAA---TTTCTCCATCTCCTAC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4520 67 - 51117 CTCCCATCTCCAT-GGTTGTCATACACTCACCTGGAGAGTCTGAACTTGGGA---CTGCTCCATCTCCTAT i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8508 67 + 26550 CTCCCATCTTGCT-AGTTCTCATATACTCACCTAGAGAGCATGAATGTGGGA---TCTCTCTATCTCCTAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 17496 67 - 57811 CTCTCTTCTGACT-GGCAGTCACACACGAACCTGGAATGTCTGGACTTGGAA---TTTCTCCATCTCCTAT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218451 64 + 667635 CTTCCATCCGCCT-GACTCTCCCACACTCACCTGAACAGTTTGAATGTTGAA------CTTCATCTCTGCT i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6547 67 - 11041 CCGCCCACCTCCA-GGTTCTCTCACGCTCACCTGCAGAGTCTGAACGTGGAG---TGTCTCCATCTCCCAC i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666752 64 + 1032594 CTTCCAA---CCC-AGTTGTCATATGCTCACCTGCAGAGTCTGGAAGTGGCA---TTTCTCCGTCTTCTAT i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64138613 67 - 94057673 CTCCCGCCCACCT-GGCTCTCACACACTCACCTGGAGAGTCGGAACTAGGGA---CTTCTCCATCGCCTAC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 78677 59 - 81011 ------TCTGGCT-GGTTCT--CACACCCACCTGAGCAGTCTGCACTTGGAA---CTTCTCCATCTCCCAC i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3183737 65 + 42029645 CCTGCATCTGACT-GGTTCG--CACACCCACCTGGACAGTCTAAACTTGAGA---GTTCTCCAGCTCCTAT i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29957231 67 - 76506943 CTCTCCTCTGTCT-GGTCTTCATACACTCACCTATTGAGCCTGAACTTGGAA---TTTCTCCATCTCCTGT i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 104660 67 - 3408981 CTCCCCTCTGCCT-GATTCTCATACACTCACCTGGAGAGTCTGAACTTGCAA---TTTCTCCATCTACTAT i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_259995 4070 71 + 4370 CTCCCACCTGCCTAGTTTCTCATACACTCACCTGGAGAGTCTGAACTTGCAACTTTTTCTCGACCCACCAT i echTel1.scaffold_259995 C 0 C 0 s dasNov2.scaffold_7587 23495 64 + 154172 CTCCCATCTGCCT-TGTTCTCATACACTCACCTGGAGATTCTGAACCTGGAA---TTTCTCCAT---CTAT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_59997 11982 61 + 12755 CCCCCATCTGCTG-TGTTCTCATACACTCACT--GAAAGTCTG-ACTGGGAA---TCTCCATCT---CTAT i choHof1.scaffold_59997 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_967 153514 0 + 251392 I a score=841048.000000 s hg19.chrUn_gl000223 57267 79 + 180455 CCACGGCTCTTCTCCTTGCTCCAATTTGAAGATGACATCTGGTTTCATAACTTCATACCCTG-TTAAGGGA--AAAATCACA s choHof1.scaffold_59997 12043 74 + 12755 CCATG--CTCTCTCCATGCTCCAAC-TGAAGATCACATCTGGTTTCATAACTTCATACCCTG--TTA-TGG--GAAATCACA i choHof1.scaffold_59997 C 0 C 0 s dasNov2.scaffold_7587 23559 78 + 154172 CCATGGCTCTTCTCCATGTTCCAACTTAAAGATCACATCTGGTTTCATAACTTCATACCCTG-TTTA-TGG--GAAATCACA i dasNov2.scaffold_7587 C 0 C 0 s echTel1.scaffold_259995 4141 79 + 4370 CCAGGGCTCTTCTCCTCGTTCCAGCTTGAAGATCACATCTGGCTTCAAAACCTCATACCCTATTTCA-AGG--GAAATCATA i echTel1.scaffold_259995 C 0 C 0 s loxAfr3.scaffold_113 104727 78 - 3408981 CCAAGGCTCTTCTCCTTGTTCCAACTTGAAGATCACATCTGGTTTCATAACTTCATACCCTA-TTCA-GGG--GAAATCACA i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29957298 78 - 76506943 CCATGGGTCTTCTCCTTGCTCCAATTTAAGGATGACACCAGGTTTCATAACTTCATACCCTG-TTCA-GGG--AAAATCACA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3183802 78 + 42029645 CCACGGCTCTTCTCCTTGCTCCAACCTGAAGATGACATCAGGTTTCACAACTTCATACCCTG-TTCA-GGG--GAAATCACA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 78736 78 - 81011 CCATGGCTCTTCTCCTTGCTCCAGCTTGAAGATGACATCAGGTTTCATAACTTCATACCCTG-TTCA-GGG--GAAAACACA i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64138680 77 - 94057673 CCAGGGCTCCTCTCCTTGCTCCAACTTGAAGATGACGTCAGGTTTCGTAACTTCATACCCTG-TCCA--GG--GAAACCACA i equCab2.chr8 C 0 C 0 s oryCun2.chrUn0106 666816 78 + 1032594 CCACGGCTCTTCTCCCTGCTCCAACTTGAAGATGACATCTGGTTTCATAACCTCATACCCTA-TTCA-GGA--AAAAACACA i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_84809 6614 78 - 11041 CCATGGCTCTTCGCCTTGCTCCAACTTGAAGATGACGTCTGGCTTCATAACTTCATAGCCTG-TTGG-GGG--GAAATCACC i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 218515 80 + 667635 CCAAGGTTCTTCACCTTGCTCCAACTTGAAGATGACATCTGGTTTCATAACTATATACCCTG-TTTG-GGGAAAAAATCACG i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 17563 78 - 57811 CCATGGCTCTTCTCCTTGTTCCAACTTGAAGATGATATCTGGTTTCATAACTTCATAACCTA-TTCA-GAG--GGAATTACA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8575 78 + 26550 CCATGGCTCTTCTCCTTGCTCCAACTTAAAGATGACATCTGGTTTCATAACTTTGTATCCTA-TTCA-GGT--GAAATCATA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s micMur1.scaffold_9962 4587 78 - 51117 CCATGGCTCTTCTCCTTGCTCCAACTTGAAGATGATATCTGGTTTCATAACTTCATATCCTG-TTCA-TGA--GAAATCACA i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 184699 79 - 135371336 CCACGGCTCTTCTCCTTGCTCCAATTTGAAGATGACATCTGGTTTCATAACTTCATATCCTG-TTAAGGGA--AAAATCACA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 221444 79 - 136387465 CCAAGGCTCTTCTCCTTGCTCCAATTTGAAGATGACATCTGGTTTCATAACTTCATACCCTG-TTAAGGGA--AAAATCACA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 193286 79 - 134511895 CCATGGCTCTTCTCCTTGCTCCAATTTGAAGATGACATCTGGTTTCATAACTTCATACCCTG-TTAAGGGA--AAAATTACA i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_887 224961 77 - 314557 CCACAGATCTTCTCCCGCCTCGATCTTTGATACAATTTCTGGCTTTCCGATTGGATAACCTG--CGA-GGG--ACGATCACA i xenTro2.scaffold_887 n 0 I 179 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I a score=271211.000000 s hg19.chrUn_gl000223 57346 68 + 180455 AAGGCCTTGGGCCCAACTGCTTGGGGTTTAGGGCCTCTAAAG-TTGAGCAAGGTTTCACA--------TCAAAGTTG s choHof1.scaffold_59997 12117 65 + 12755 AAGGATGTGGACCCAA---CTTGGT-TTAAGGGCCTCTGAAGAATGAGCAAGATTTAGCA--------TCAGAGTTG i choHof1.scaffold_59997 C 0 C 0 s dasNov2.scaffold_7587 23637 69 + 154172 AAGGATTTGGACCCAACTGCTTGGTCTTTAGGGGTTCTGAAGAATAAGCAAGATTTAGCA--------TCAGAGATG i dasNov2.scaffold_7587 C 0 C 0 s echTel1.scaffold_259995 4220 63 + 4370 AAGGGCTAGGACACAACAGC------GTTAAAGTCTCTGAAGAACAAGCAAGGTTTAGCT--------TCTGAGTTC i echTel1.scaffold_259995 C 0 C 0 s loxAfr3.scaffold_113 104805 62 - 3408981 AAGGACT------TAACTGCTGGGT-TTTAAGGCCTCTGAAGAATGAGCAAGGTTTAGCA--------TCAGAGTTG i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29957376 67 - 76506943 AAGACCTTGGCCCCTACTGCATGGCCTTTGAGGCCTCTGAAGAAGGAGCAAGGTTTGGAA--------TTA--GTTG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3183880 67 + 42029645 AAAGAAATGGCTCCAACTGCTTGTGCTTTAGGGCCTCTAAAGGGCAAACAAGTTCTAGCA--------TCA--GGTG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141210 78814 68 - 81011 AAAGCCTTGACCCTGACTGCTTGGGCTTCAGGGCCACCGAAGAAACAGAAAGGTTTGGCA--------TCA-CACCG i felCat3.scaffold_141210 C 0 C 0 s equCab2.chr8 64138757 67 - 94057673 AAGGCCTTGG--CTGACTGCTTGGGCTCTAGAGCCTCTGAAGAACGAGGAGGGGCTGGAC--------TCGGAGCTG i equCab2.chr8 C 0 C 0 s oryCun2.chrUn0106 666894 42 + 1032594 AAAGCTTTGGGCTCAACTGCTTGAGCTTTAGGGCTTCAAAAG----------------------------------- i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_84809 6692 55 - 11041 AAGGACATGGTTCTGGCT-CCTGGGCTTCAGGGCCTCTGAGGAAGCAGCAGAGCTT--------------------- i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 218595 69 + 667635 TAAGCTGTGGACATAAATACACAGGCTTTAGGGCCTCTAGAGGAAAAGCAAGGTTTGGCC--------TCAGAGTCC i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 17641 77 - 57811 AAGGCCTTCAATCCAGCTGCTTGGGCTTTACGGCATCTGATGAACAAACAAGGTTCAAAGTTGGCACATCGAAGTTG i tupBel1.scaffold_103331.1-57811 C 0 I 105 s otoGar1.scaffold_101698.1-26550 8653 48 + 26550 AAT------------AATGCTCAGGATTTAGGGCCTTTACAGAATGAGAAAAATTTAGCT----------------- i otoGar1.scaffold_101698.1-26550 C 0 I 249 s micMur1.scaffold_9962 4665 57 - 51117 AAT------------ACTGCTTGGGCTTCAGGGCCTCTGAAGAATGAGCAAGGTTTAACA--------TCAGAGTTG i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 184778 68 - 135371336 AAGGCCTTGGGCCCAACTGCTTGGGGTTTAGGGCCTCTAAAG-ATGAGCAAGGTTTCACA--------TCAAAGTTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 221523 68 - 136387465 AAGGCCTTGGGCCCAACTGCTTGGGGTTTAGGGCCTCTGAAG-ACGAGCAAGGTTTCACA--------TCAAAGTTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 193365 68 - 134511895 AAGGCCTTGGGCCCAAATGCTTGGGGTTTAGGGCCTCTGAAG-ATGAGCAAGGTTTCACA--------TCACAGTTG i rheMac2.chr11 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=-46902.000000 s hg19.chrUn_gl000223 57414 74 + 180455 GCCTGG------------------------------------------------------------------TGAAG--------CTG------TACCCCAACAG---AGTA-----AGTAATTCTC-AAAG----TTACAGTAACG-GTCTCCCT-TGGTGGCTAATA s rheMac2.chr11 193433 73 - 134511895 GCCTGA------------------------------------------------------------------TAAAG--------CTG------TACCTCAACAG---AGTA-----AGTAATTCTC-AAAG----TTACAGTAACA-GTCTCCC--TGGTGGCTAATA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221591 74 - 136387465 GCCTAA------------------------------------------------------------------TGAAG--------CTG------TACCTCAACAG---AGTA-----AGTAATTCTG-AAAG----TTACAGTAACG-GTCTCCCT-TGGTGGCTAATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184846 74 - 135371336 GCCTGG------------------------------------------------------------------TGAAG--------CTG------TACCCCAACAG---AGTA-----AGTAATTCTC-AAAG----TTACAGTAACG-GTCTCCCT-TGGTGGCTAATA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4722 73 - 51117 GCCTGA------------------------------------------------------------------TAAAA--------TTG------TACCTCTAGAG---AGTC-----AATGATTCTC-AAAG----TTATGGTAACA-GTCTCCA--AGGGAGCTAATA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 8950 81 + 26550 GCCTTA------------------------------------------------------------------GCCAC--------TTG------AGCCACAGGCGCCAAGCCAGCTAAATGATTCTT-AAAT----TTCTGGTAATA-ATTTCCC--AGGTGGCTAATA i otoGar1.scaffold_101698.1-26550 I 249 C 0 s tupBel1.scaffold_103331.1-57811 17823 145 - 57811 GCCTGGGACTCATACCATGGCTAGCCATGTGGGAGTTCAGCACCCTTAACCACCACCACCTGCTGGCTACCTCGAAG--------CTGCATAAATAGTTTAACAT---AATA-----AGTGATTCTC-AAAG----TTATGGTGATG-GTCCACC--TGATGACTAACG i tupBel1.scaffold_103331.1-57811 I 105 C 0 s cavPor3.scaffold_248 218664 69 + 667635 ACTGAA------------------------------------------------------------------CAAAG--------CTA------GGTCACAATAT---AACA-----AATAACT----TGAG----TCAGGATAATG-GCT-TCC--TAATAGCCAACA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6747 67 - 11041 ----AA------------------------------------------------------------------CAGAG-----GGTCTT------CATCTCAACA----GACA-----ATTCTCT----GGAG----TCATGACAACA-GCTGCCC--CTGTAGTGAAC- i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666936 33 + 1032594 ----AA------------------------------------------------------------------TGAAG--------CCA------CATTTCCATAT---TGTG-----GCT-----------------------AACA-G-------------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29957443 81 - 76506943 ACCCAG------------------------------------------------------------------TGAAGCCACCCACATG------AATACCAACAA---AGTA-----AACAATCCTC-AGAG----GAATGGTAACA-GTCTTCC--CAGTGGATAATA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64138824 78 - 94057673 GCCCAG------------------------------------------------------------------TGAAGCTACCCGTCTG------TGTATCA--AG---AGTA-----AATACTCCTC-AAAG----AAACAGCAATG-GCCCCCC--TGGT-CCTAACA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 78882 74 - 81011 GCCCAG------------------------------------------------------------------TGAAG-TACCCATCTG------TGTATGAACAG---ACTA-----AATAATTCTC----------AACAGCAGGG-GTCTCCC--TGGTGGCTGAT- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3183947 74 + 42029645 ACACAG------------------------------------------------------------------TGAATCTACCCATTTG------TGTATCAACAG---AGTA-----AATAATTCTC----------AAAGGCAATG-GTCTCCC--TGGTGGCTAA-- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_142268 4216 53 + 4863 ------------------------------------------------------------------------TAAAAGTTCTCTTTCA------GG-----ATAG---AGGA-----GATTATACCC---------------------CTTTGTT--TGGGGCCAGA-- i myoLuc1.scaffold_142268 N 0 C 0 s loxAfr3.scaffold_113 104867 81 - 3408981 GCTCAA------------------------------------------------------------------TGAAGCTAACCATTTA------TATCTCCGCAG---AGTA-----AATCATTTTA-AAAG----ATACAGTAATA-GTTTCCC--TGGTGGACAGTA i loxAfr3.scaffold_113 C 0 I 8 s echTel1.scaffold_259995 4283 81 + 4370 ACCTAA------------------------------------------------------------------TAAAACTCCCCACTGT------TATCTCAACAC---TGTA-----AATAACTTTAGAAAG----ATATAATAAT--TCATCCC--TGGTGACAAATA i echTel1.scaffold_259995 C 0 N 0 s dasNov2.scaffold_7587 23706 59 + 154172 GCCCAG------------------------------------------------------------------TCAAGTCATCCATTTA------TATCTCAACAG---AG---------TAATTTTC-AAAA----GTACAGTAATAg--------------------- i dasNov2.scaffold_7587 C 0 I 1211 s choHof1.scaffold_59997 12182 78 + 12755 GCCAAG------------------------------------------------------------------TGAAGCCACCCATTTG------TATCTCAACAG---AGTA-----AATAATTTTC-AAAG----TTATAGTAATGG----TCC--TGGTGCTTAACA i choHof1.scaffold_59997 C 0 I 8 s ornAna1.Contig10280 15612 75 + 18316 GCTGGG------------------------------------------------------------------TGGAG--------CCA------GG----GGCAG---GGAG-----AGCATCTCTC-CAAGCTCTCTGTAGATGCA-ACCTCTTCACAGGAGCCAACG i ornAna1.Contig10280 N 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=98005.000000 s hg19.chrUn_gl000223 57488 131 + 180455 GGGTC-TAGTA-------------------------CAAA--GCCACTGAACACTTcagaggctc--tggagccagtaag-cctgggttt-acatccaggctct-------------------t-taatt-tacta--------gctgttagttcttgggaaagttacttaac--ctctcttggcctcgatctt s rheMac2.chr11 193506 133 - 134511895 GGGTC-TAGTA-------------------------CAAAGCGCCACTGAACACTTTAGAggctc--tggagccagcaag-cctgggttt-acatccaggctct-------------------t-taatt-taata--------gttgttagttcttgggaaagttacttaac--ctctcttggccttgatttt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221665 150 - 136387465 AGGTC-TAGTA-------------------------CAAA--GCCACCGAACACTTcagaggctc--tggagccagtaag-cctgggttt-acaaccaggctctttaatttactagctgttagt-taatt-tacta--------gctgttagttcttgggaaagttacttaac--ctctcttggcctcgatctt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 184920 131 - 135371336 GGGTC-TAGTA-------------------------CAAA--GCCACTGAACACTTcagaggctc--tggagccagtaag-cctgggttt-acatccaggctct-------------------t-taatt-tacta--------gctgttagttcttgggaaagttacttaac--ctctcttggcctcgatctt i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4795 89 - 51117 GGGTT-TAAGAACCtttgac-------------------------------------------------------------------------ttctaggatct-------------------t-tcatt-tacta--------gctgtcagtccttgagaaagttatttaag--ctctctttgtctcaatttt i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9031 154 + 26550 TGGTC-TAAGAATTGTTGACATCTATAATTCAAATCCAAA--ACCATTAAACACATTAGAggttc--tggagccagtatg-cctgggttc-aaatctaggctgt-------------------t-tcatt-tatta--------gctgtcagtcctttagaaagttatttaac--ctctc--tgtctcaatttt i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 17968 151 - 57811 GGATCTTAAGAATATTTGAGTTCTGTAGTTCAAGC-TGAA--ACCATTACACAATTCAGAAGctc--tagaggtagtctg-cctaggttc-agacccaggctcc-------------------t---gtt-tact-----------tctcagtccttaggaaagttacttaat--ctctctttgcctcaatttt i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218733 145 + 667635 AGGCC-TAGAAGTCTTTAATTTCTATGATTTAAGTCCCAA--ACCATCCAACACTTCA-AAactc--tgaagccaagctc--ccaagttc-agctccaggatcc-------------------c-caa---tatta--------gctgtcattc-ctagaaaagttactttac--ctgtctt------gatttt i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6814 134 - 11041 AGGTC-TAAGGATCTTTGACTGCT-------------------CCACTCGgcactgt-----ctc--tggagccacacca--cagggttc-aactccaggctct-------------------t-ttggccttctt--------gctctcagtcactgggacagttactttac--ttctctttgcctcaatttt i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 666969 151 + 1032594 AATCC-CAACAATCTGCAACTTTTATAATACAAGTCCAAA--CTTATTATACACTTcatgagctc--tagagccagccta-gcagggtta-aattccaggctct-------------------t-t-----tagta--------gctatcagtc-cttggaaagttatttaaa--cactctaggcttcgatttt i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29957524 153 - 76506943 TGGTC-TAAGAATCTTTGATTTCTATAACTCAAGTCCAAA--ACCATAA-ACCCTTCAGAGTctc--tgtagttggtctg-ctctggttc-aaattcaggc------------------------tcatt-tccta--------gctgtcaggccttgggaaaaatacttaacttttttctttgtctcaatttc i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64138902 149 - 94057673 GGGTC-CAAGAATC-TCGGACTC--TAATTCAAGT-CCAA--ACCGTAGGACTCTCcagaggctc--tggagccagtcct-cct-gggtc-aaatccaggctct-------------------t-tcact-aacta--------gctgtcagttcctggga--gtcacttcac--ctctctttgcctcaattta i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 78956 130 - 81011 GGTTC-TAAGATTG-TTCACTTCTGTAATCCAAATACAAA--ACCATTACATGCTTcagaggctc--ccgagcccatcag-cctgggttc-aaatccaggccct-------------------t-tcaat-gacta--------gctgtcaatccttggga---------------------------aagtga i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3184021 110 + 42029645 -------GAAACT--TTGACTTCTATAATCCAAATACAAA--ATCTTTATACACCTCAGAGGCAC--TGGAGCCAGTCTG-CCT--------------GGCCCT-------------------T-TCAGG-TATTT--------GCTATCAATCCTTGGGA---------------------------AAGTTA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_142268 4269 104 + 4863 GGG----GAGATT-----------------------GGAA--ATCTGCTGACTCTTCAGAGG---------ACCACAGTG-ACT----------ACAAAGCTTT-------------------CATCAAG-TACTAGAGcagtggttctcaaccttcctca---------------------tgcctcgaccct i myoLuc1.scaffold_142268 C 0 N 0 s loxAfr3.scaffold_113 104956 109 - 3408981 ---------GAATCTTTGACTTCTATAATTCAAGTCCAAA--ACCACTAAGCACATCAGAGGC--------------------------------------------------------------Tcatt-tatta--------gctgtcagcccttgggaaaggtacttaac--ttctccttccttcaatct- i loxAfr3.scaffold_113 I 8 C 0 s choHof1.scaffold_59997 12268 104 + 12755 ---------GAATCTTTGACTTCTATAATTCAATTACCAA--ACAATTAAATATTTcagagcct--------------------gggttc-aaatccagactct-------------------t-tcatt-tatca--------gctgttagtccttggAAAGAT----------------------------- i choHof1.scaffold_59997 I 8 I 3 s ornAna1.Contig10280 15687 125 + 18316 ----------------------------------TGGTGA--TATGGTCAACACTCTGTAAGTgccgtggcgtcagaaggacctgggttctaaatcccagctct-------------------g-ccact-ttgtc--------ggtatga--ccttgggcaagtcactccat--ttctctgtgcctcaattac i ornAna1.Contig10280 C 0 C 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=45643.000000 s hg19.chrUn_gl000223 57619 29 + 180455 ctcatcaggaa-aaatgga--taatg---------------actgta s rheMac2.chr11 193639 26 - 134511895 ctcatcaggaa-aaatgga--taacg------------------gta i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221815 29 - 136387465 ctcatcaggaa-aaatgga--taata---------------actgta i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185051 29 - 135371336 ctcatcaggaa-aaatgga--taatg---------------actgta i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4884 26 - 51117 ctcatctagaa-aaaggga--tgatt------------------att i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9185 26 + 26550 ctcatgtggaa-aaaggga--taatt------------------gta i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18119 29 - 57811 ctcatcagcca-aaaaggc--taaca---------------actgta i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 218878 29 + 667635 cacaccaggaa-aaaagga--taatc---------------attgta i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 6948 20 - 11041 cttctcaggaa-aaaagg--------------------------gta i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 667120 29 + 1032594 ctcatcataaa-aaaagga--taata---------------atcata i oryCun2.chrUn0106 C 0 I 2523 s bosTau4.chr17 29957677 45 - 76506943 ctcattagaaaaaaaaaaa--gaaaaaaaaaaaAAGAGTGCAACACA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64139051 30 - 94057673 ctcactagagaaaaaaggc--gagta---------------aatgca i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 79086 21 - 81011 ctt---------aaAAGGA--GCAGA---------------ATTGTA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3184131 21 + 42029645 CTt---------aaaggga--gaata---------------atcata i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 105065 27 - 3408981 --cattaggaa-aaaagga--taata---------------atagta i loxAfr3.scaffold_113 C 0 C 0 s ornAna1.Contig10280 15812 25 + 18316 ctcctctgtaa-aatggggattaaaa--------------------- i ornAna1.Contig10280 C 0 N 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I e choHof1.scaffold_59997 12372 3 + 12755 I a score=41145.000000 s hg19.chrUn_gl000223 57648 60 + 180455 cttgccacatagg-attgctctgatgactaaatga-----gttgatatacgtaaagcac------------------ttggtat s rheMac2.chr11 193665 56 - 134511895 ctagccacataa-----tctctgatgattaaatga-----gttgatatatgtaaagcac------------------gtggtat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221844 60 - 136387465 cttgccacatagg-attgctctgatgactaaatga-----gttgatatacctaaagcac------------------ttggtat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185080 60 - 135371336 cttgccacatagg-attgctctgatgactaaatga-----gttgatatacgtaaagcac------------------ttggtat i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4910 60 - 51117 cctgccacacagg-actgctctgatgattaaatga-----gtcaatatatgtaaagcgc------------------ttggtac i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9211 52 + 26550 cctgccaca--------------------------------tcaatatatataaagcactggtacagtatgtgtacattggtac i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18148 53 - 57811 cctgtcccgaaaaccttgctctgatgattaaatga-----ctcaatacatgtaa---gc------------------tt----- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s speTri1.scaffold_84809 6968 55 - 11041 cctaccacgcagg-actgctCCAATGCCTAAACTG-----GTGGACTCCC-----TCCT------------------GTGAGGC i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 218907 44 + 667635 cctaccgtataga-actg-tCCAAAGACTATGTAG--------------------CCTT------------------GTGATAC i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29957722 49 - 76506943 TCTGCCACACAGG-ATTGCTCTTACAAT----TGA-----GTCAATATAAGAACAATAT------------------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64139081 53 - 94057673 cctgccacgcagg-atggctctgacga-----tgaaaggcgtcaacgtatgAACAGGAC------------------------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 79107 48 - 81011 CCTGCTATACAAA-ACTGCTCTGTAAG-----TAA-----GTCAACACAGAAGAAGCAA------------------------- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3184152 48 + 42029645 cctgccccacaga-actgctgtgtaaa-----taa-----gtccacagatgaacagtat------------------------- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 105092 53 - 3408981 tctgccatagaga-actgctctaatcattacatga-----gttaatatgtgtacagtgc------------------------- i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 667149 2523 + 1032594 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I e choHof1.scaffold_59997 12372 3 + 12755 I a score=-23100.000000 s hg19.chrUn_gl000223 57708 52 + 180455 aagatgtggcatatagtaagTTATATGCATTAGGTG------CTA-------T----------CACTACTG------------CTCA s rheMac2.chr11 193721 64 - 134511895 aagatgtggtatacagtaagTTACATGCATTAGGTG------CTA-------C----------CACTACTGctcaaactattactca i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221904 64 - 136387465 aagatgtggcatatagtaagTTATATGCATTAGGTA------CTA-------C----------CATTACTGctcaaactattactca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185140 52 - 135371336 aagatgtggcatatagtaagTTATATGCATTAGGTG------CTA-------C----------CACTACTG------------CTCA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 4970 51 - 51117 agtatgtggcctatagtgaATTATATGCTTCAGGAG------CTA-------C-----------ACTACTA------------CTAT i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9263 52 + 26550 agtatgtggcatattgtgaacTGTGCATATTAGGAG------CTA-------C----------AACTACTA------------CCAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18201 38 - 57811 -agGTATGGC--------AGTTATGTA-ATTAGGTG------CTG-------C----------TGTTACGA---------------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s speTri1.scaffold_84809 7023 55 - 11041 A-CCTGGGGTGTGCAGT-ATGCAGC-ACAGCACACG------GCAGACACC-C----------ACCCACTG------------TCAC i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 218951 58 + 667635 AGCATGTGTTATACTGTAATTCATCTGCAGTATATG------cca-acaccac----------caccacca------------cctc i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29957771 46 - 76506943 -----GTGAAATTCGGTAAATTACATGCCTCAGGAG------CTT-------T-----GTTGTTgttca------------------ i bosTau4.chr17 C 0 I 452 s equCab2.chr8 64139134 40 - 94057673 -----GTGG-ACAGAGGAAGTTACACGCACTACCTG------CTA-------C----------CCCCCA------------------ i equCab2.chr8 C 0 I 3 s felCat3.scaffold_141210 79155 37 - 81011 -----GTGGAACACAGCCATTTCCTTGCATTAGGTG------CCA-------A--------------CC------------------ i felCat3.scaffold_141210 C 0 I 3 s canFam2.chr26 3184200 51 + 42029645 -----gtgaaatacagtaagttcctagcactagatg------ctg-------agcactaatggtaCCAC------------------ i canFam2.chr26 C 0 I 3 s loxAfr3.scaffold_113 105145 40 - 3408981 -----gtagcataTA-TAAGTTATATGTCATAGGTG------GTA-------C----------TGCTAC------------------ i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 12375 46 + 12755 AATGTGTGGCAT------AGTCACATGTGTTGGATGCTACAACTA-------C----------TGCTAC------------------ i choHof1.scaffold_59997 I 3 C 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 667149 2523 + 1032594 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=74078.000000 s hg19.chrUn_gl000223 57760 30 + 180455 AACTATT-ACTACTTAAGTTTCAGAGGCTGC s rheMac2.chr11 193785 30 - 134511895 aactatt-actACTTAAGTTTCAGAGGCTGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 221968 30 - 136387465 aactatt-actACTTAAGTTTCAGAGGCTGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185192 30 - 135371336 AACTATT-ACTACTTAAGTTTCAGAGGCTGC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 5021 30 - 51117 CCCTATT-ACTACTTAAGTTTCAGAGGCTGC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9315 30 + 26550 CACTGTT-ACTGCTTAAGTTTCAGAGGCTGC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18239 15 - 57811 ----------------TGCTTCAGAAGCTGC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s speTri1.scaffold_84809 7078 24 - 11041 CACTACTCATCAGTTAGGTTT-------CTG i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 219009 28 + 667635 cactact-accacATAGATTC--AAAGATAA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29958269 28 - 76506943 AACTATT-ACTA--TTAGCTTCAGAGGCGGC i bosTau4.chr17 I 452 C 0 s equCab2.chr8 64139177 28 - 94057673 CCCGAGG-ACTA--TTAGTTTCAGAGGCTGC i equCab2.chr8 I 3 C 0 s felCat3.scaffold_141210 79195 28 - 81011 CATGAAT-GCAG--TAAGTTTCGGAGGACGC i felCat3.scaffold_141210 I 3 C 0 s canFam2.chr26 3184254 28 + 42029645 CACCATT-CTGA--TAAGTTTCAGAGGCTGC i canFam2.chr26 I 3 C 0 s loxAfr3.scaffold_113 105185 29 - 3408981 TGCTACT-CCTACTT-AGTTTCAGAGGTTGA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_59997 12421 29 + 12755 GACTACT-ACTACTT-GGTTCCAAAAGCCAC i choHof1.scaffold_59997 C 0 N 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 667149 2523 + 1032594 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=171994.000000 s hg19.chrUn_gl000223 57790 43 + 180455 ATGACAAACTTACAACTTCATTATT-GAAAGGTGAGACCCAAAT s loxAfr3.scaffold_113 105214 43 - 3408981 ACAATGAAGTTATGACTTCATTATT-GGAAGGTGAGATCCAAAT i loxAfr3.scaffold_113 C 0 C 0 s canFam2.chr26 3184282 43 + 42029645 ACAATGTAAATATGTCTCCATTACT-GGAAGGCATGGTGTAGAC i canFam2.chr26 C 0 I 1 s felCat3.scaffold_141210 79223 19 - 81011 ATAAAGAAAAGAAGCCTTC------------------------- i felCat3.scaffold_141210 C 0 M 100 s equCab2.chr8 64139205 43 - 94057673 ACAACAAAATTAAGACTTCATTACT-GGAAGGGGAGAGCCAAAT i equCab2.chr8 C 0 I 1 s bosTau4.chr17 29958297 43 - 76506943 ACAATGAAATTAAGACTTCATTATT-GGAAAGTGAGGTTCAAAT i bosTau4.chr17 C 0 I 1 s cavPor3.scaffold_248 219037 43 + 667635 CCAACAACCTACAGCTGCCATTACT-GGAGGGTGAGAGCCAAAT i cavPor3.scaffold_248 C 0 I 133 s speTri1.scaffold_84809 7102 44 - 11041 ACAACAAACTTAAGATTTCATTATTGGGAAGGTGGGATCCAAAT i speTri1.scaffold_84809 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18254 43 - 57811 ATCACAAACTTGAAAGTTCTTCACT-GGAAGGTAAGAGCCAAAT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9345 43 + 26550 ACAACAAACTTAAGACTTCATTATT-GGAAAGTGAGATCCAAAT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s micMur1.scaffold_9962 5051 43 - 51117 ACAACAAACTTAAGAATTTATTACT-GGAAGGTGAGATCCAAAT i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 185222 43 - 135371336 ATGACAAACTTACGACTTCATTATT-GAAAGGTGAGACCCAAAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 221998 43 - 136387465 ATAACAAACTTACGACTTCATTATT-GAAAGGTGAGACCCAAAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 193815 43 - 134511895 ATAACAAACTTACGACTTCATTATT-GAAAGGTGAGACCCAAAT i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 667149 2523 + 1032594 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=40481.000000 s hg19.chrUn_gl000223 57833 41 + 180455 -ACTTTCTTGGT-----------------------------------------------------------------------GTCATAGTCCA---AGCAACTGTGATC------------------------------------------------------------TAAGTT s rheMac2.chr11 193858 41 - 134511895 -ACTTTCTTGGT-----------------------------------------------------------------------GTCATAGTCCA---AGCAACTGTGATC------------------------------------------------------------TAAATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 222041 41 - 136387465 -ACTTTCTTGGT-----------------------------------------------------------------------GTCATAGTCCA---AGCAACTGTGATC------------------------------------------------------------TAAGTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185265 41 - 135371336 -ACTTTCTTGGT-----------------------------------------------------------------------GTCATAGTCCA---AGCAACTGTGATC------------------------------------------------------------TAAGTT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 5094 44 - 51117 -ACTTTCTCAGT-----------------------------------------------------------------------GTCACAGCCCA---AGGAACTTGGATC---------------------------------------------------------TCCTAAATT i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9388 43 + 26550 -ACTTCCTTGGT-----------------------------------------------------------------------GCCATA-CCCA---AGGAACTTGGATC---------------------------------------------------------TCTTAAATT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18297 44 - 57811 -ACTTCCTTGAC-----------------------------------------------------------------------TTCACAGACCA---AGACACTTGGATC---------------------------------------------------------TTTTAAATT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 219213 175 + 667635 -ATCCTCCTCCCTTAGTCCCCTAAAGAGATGAAAGTATAGGTGTGTACAACTATGCCTGGCTCCAAATACACAAAGTATTTGAAACAGAAACTATAAAGAAATCTCCAGTTCTAAAAGGAAAAAAAAAAGCAAGAAAAAGAAACTTTCCAAGTCAAGGAACTTGATCTCCTAAATT i cavPor3.scaffold_248 I 133 C 0 s speTri1.scaffold_84809 7146 42 - 11041 -ACTTTCTTGCC-----------------------------------------------------------------------AACATAATCCA-----AGACTTTTACT---------------------------------------------------------TCCTAAATT i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 669672 37 + 1032594 -actctc----------------------------------------------------------------------------atggggttCAA-----TGAATTTTAAT---------------------------------------------------------CACCTAATT i oryCun2.chrUn0106 I 2523 C 0 s equCab2.chr8 64139249 44 - 94057673 -CCTTCCCTGGG-----------------------------------------------------------------------GTCAAAGTCCA---AGGAACTCTGCTC---------------------------------------------------------TCCTAAATT i equCab2.chr8 I 1 C 0 s canFam2.chr26 3184326 44 + 42029645 -CTCTCCCTGGC-----------------------------------------------------------------------ATCATAGTCAA---GGAATTTTTAATC---------------------------------------------------------TCCTAAATT i canFam2.chr26 I 1 C 0 s bosTau4.chr17 29958341 46 - 76506943 -CTTTCCCTGGGACT--------------------------------------------------------------------GTCATAGTCCA---AGAA-CTTTGATC---------------------------------------------------------TCTAAAATT i bosTau4.chr17 I 1 C 0 s loxAfr3.scaffold_113 105257 45 - 3408981 ATTTTCTCTGGT-----------------------------------------------------------------------GTCACAATCCA---AGATACTTTGATC---------------------------------------------------------TCCTAAATT i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_141210 79242 100 - 81011 M e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225038 179 - 314557 I a score=132420.000000 s hg19.chrUn_gl000223 57874 113 + 180455 TCAGGTCTAA-AATCA--------TTAAAAATTTCAGA------AGCCTAGCTATA------GGCTTCTGAAACTTCCCAGCAACT-------AAAAATAAAAGGCAATG-CATTGGGCATAGTCCAAGGTCCTCAAGAAAG s loxAfr3.scaffold_113 105302 100 - 3408981 TA-AGTCCCA-AACAG--------TTAAATATTTTAGA------GGCTCCAGAG--------------------TGCGCAGCAACT-----GATGGGAGAAAAGGCAATT-TACTGAGCACAATATGAGGTATTCTGGGCAG i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29958387 98 - 76506943 TA-GGTCCAA--ATCA--------TTAAAAATTTTGCA------AGTCCCAGAA--------------------CTCTCAGAAACT------AAAGAAGAACAAGCAAGG-TACTAGATACAATATGAGGTCTTCTGGGAAG i bosTau4.chr17 C 0 I 128 s canFam2.chr26 3184370 93 + 42029645 TA-GGCCCAA-CACCA--------TTGGAAATTTCAGA------AGCAGCATGG--------------------CTCTCAGCGACT------------GAAACAGTAAGG-TACTGGGCACCATATGAGGTCCTCTGGGAGC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64139293 99 - 94057673 CA-GGTCTAA-AATCA--------TTAAAAATTTCAGA------AGCCCCAACA--------------------CTCTCAGCGACT------AAAAAAGAAACAGCAAGG-CACTGAGCCCAATCTGAGGTCCCCTGGGAAG i equCab2.chr8 C 0 C 0 s oryCun2.chrUn0106 669709 100 + 1032594 TA-ACTATAC-AAGTA--------TTAAAAAATTCAGAGTCCATAG----------------------------CTCTCAGTAAGT---ATAACAAGGGGGAGAGCAATT-TACTGAGCATAGTCCAAGGTACCTGAGGAAA i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_84809 7188 97 - 11041 CT-GGTCCAA-AATCA--------TTAAAAAATTCAGA------AG----------------------------CATTAAGCAACTTTATTAAAAAAGAGAAAAGCAATG-CATTGGACATATTCTGAGGTCCCTGAGGAAT i speTri1.scaffold_84809 C 0 C 0 s cavPor3.scaffold_248 219388 104 + 667635 TC-AACCCAA-GTTCACCTAAAATTTGCAGAATCCTGC------AG----------------------------AATTAATTCACTCAAAAAACAAAAACAAAAACACTGCCATTTGGCACAACAT--GGTACTCACAAGAG i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18341 88 - 57811 T--AGTCTAA-AATCA--------TT--AAGTTTTAGA------GGTGTC-----------------CAG----CCCACAGAAACA-------AAAA--AAAGAGCAGTG-TAATGG---CAGTTTCAG-CGCTTGAGGAAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9431 91 + 26550 TT-GATCCAA-AATCA--------TTAAAAGTTTCTGA------AGCCTA-----------------TTG----CTCTCAGCAACT------AAAAAAGAAAAGG------CACTGGGCACAATTCAAGGTA--CATAGAAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s micMur1.scaffold_9962 5138 98 - 51117 TT-GGTCCAA-AATCA--------TTAAAAATTTCAGA------AGTCTA-----------------TTG----CTTTAAGCAACT------AAAAAAGACAATGCAACA-CACTGGGCACACTCCAAGGTACTCAAGGAAG i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 185306 113 - 135371336 TCAGGTCTAA-AATCA--------TTAAAAATTTCAGA------AGCCTAGCTATA------GGCTTCTGAAACTTCCCAGCAACT-------AAAAATAAAAGGCAATG-CATTGGGCATAGTCCAAGGTCCTCAAGAAAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 222082 113 - 136387465 TCAGGTCTAA-AATCA--------TTAAAAATTTCAGA------CGCCTAGCTATA------GGCTTCTGAAACTTCCCAGCAATT-------AAAAATAAAAGGCAATG-CATTAGGCATAGTCCAAGGTCCTCGAGAAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 193899 113 - 134511895 TCAGGTCTAA-AATCA--------TTAAAAATTTCAGA------AGCCTAACTACA------GGCTTCTGAAACTTCCCAGCAACT-------AAAAATAAAAGGCAATG-CATTGGGCATGGTCCGAGATACTCAAGAAAG i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_887 225217 108 - 314557 TC-AGTCCTAGAAGCG--------CTA------CTAGA------GGTCCGACTGTGTATAATGGAGACAGCAGCCGCTGAAGACTT----------AATTAACGACATGT-AATTAGTGACTGGCCAATGGATTGCAGCG-- i xenTro2.scaffold_887 I 179 C 0 s felCat3.scaffold_141210 79344 84 - 81011 -----------AACCA--------TTAAAAAATTCAGA------ACCCCCACAG--------------------CTCTCAGCAACT------------AAGCAAGTAAGG-TATTAGGCATAGTCTGAGGTCCTCCAGGAAG i felCat3.scaffold_141210 M 100 C 0 e dasNov2.scaffold_7587 23765 1211 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I a score=1525696.000000 s hg19.chrUn_gl000223 57987 150 + 180455 CTTTTATTACCCAGTGACACTAGGCTGCTATAGTTCTCCAACATCACATCCTTGTATAAATTCTTCTGAGAGGGATCCAGTAGCTGCCACTCCTTTTGGGTGAAGTCCACAGATAAATCGTCAAATGAGAATGACTCCTGTAAGAGCACA s rheMac2.chr11 194012 150 - 134511895 CTTTTATTACCCAGTGACACTAGGCTGCTATAGTTCTCCAACATCACATCCTTGTATAAATTCTTCTGAGAGGGATCCAGGAGCTGCCACTCTTTTTGGGTGAAGTCCACAGATAAATCATCAAATGAGAATGACTCCTGTAAGAGCACA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 222195 150 - 136387465 CTTTTATTACCCAGTGACACTAGGCTGCTATAGTTCTCCAACATCACATCCTTGTATAAATTCTTCTGAGAGGGATCCAGTAGCTGCCACTCCTTTTGGGTGAAGTCCACAGATAAATCGTCAAATGAGAATGACTCCTGTAAGAGCACA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185419 150 - 135371336 CTTTTATTACCCAGTGACACTAGGCTGCTATAGTTCTCCAACATCACATCCTTGTATAAATTCTTCTGAGAGGGATCCAGTAGCTGCCACTCCTTTTGGGTGAAGTCCACAGATAAATCGTCAAATGAGAATGACTCCTGTAAGAGCACA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 5236 150 - 51117 CTTTTCTTACCCAGTGACACTAGGCTACTATAGTTCTCCAACATGACATCCTTGTATAAATTCTTCTGATAGGGATCCAACAGCTGCCATTCCTTTTGGGTGAAGTCTACAGATAAATCTTCAAATGAAAATGATTCCTGTAAGAGCACA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9522 150 + 26550 ATTTTCTTACCCAGTGACACTAGGCTACTATAGTTCTCCAACATTACATCCTTGTATAAATTCTTCTGATAAGGATCCAGTAGCTGCCATTCCTTTTGGGTGAAGTCCACAGATAAATCTTCAAATGAGAATGATTCCTAAAAGAGTACA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18429 150 - 57811 TTTTTCTCACCTAGTGACACGAGGCTGCTATAGTTTTCCAACATGACATCTCTGTACAGGTTCTTCTGGAAGGAATCCAAGAGCTGCCATTCCTTTTGTGTGAAGTCCACAGATAAATCTTCAAATGAGAGTGACTCCTGTAAGAGCACA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 219492 150 + 667635 CCTTTCTTACCCAGCGACACAAGGCTGCTATAGTTCTCCAACATGACATCCCTATACAAGTTCTTCTGGTGTGGTTCCAGGAGCTGCCACTCCTTCTGAGTAAAGTCCACAGACAAATCGTCAAATGAGAATGACTCCTGCAAGAACACA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_84809 7285 150 - 11041 CTTTTCTTACCCAGTGACACTAGGACGTGGTAGTTCTCCAGCATGACATCCTTGTACAAGGCCTTCTGATGGGGACCCAGTAACAGCCATTCTTTTTGGCTAAAGGCCACACATAGATCTTCAAAGGAGAATGATTCCTGGAAGAGCACA i speTri1.scaffold_84809 C 0 C 0 s oryCun2.chrUn0106 669809 150 + 1032594 CATTTCTTACCCAGTGACACTAGGTTGCTAAAGTTCTCCAACATGACATCCTTGTATAACTTTTTCTGTTGTGGATCCAGTAGCTGCCATTCCTTTCGGGTGAAACCCACAGATAAATCTTCAAATGAAAATGACTCCTGCAAGAGCACA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29958613 150 - 76506943 CTTTTCTTACCTAGTGACACGAGACTGCTATAATTCTCCAACATGACATCCTTGTATAAGTCCTTCTGATGGGGGTCCAGTAGCTGCCATTCCTTCTGGGTGAAGTCCACAGATAAATCTTCAAATGAGAATGACCCCTGTAAGAGCACA i bosTau4.chr17 I 128 C 0 s equCab2.chr8 64139392 148 - 94057673 CTGTCCTTACCCAGTGACACGAGGCTGCTGTAGTTCTCCAACATGACGTCCCTGTATAAGTCCTTCTGGTGGGGGCCCAGCAGCTGCCACTCCTTCTGGGTGAAGTCCACGGACAAATCTTCAAATGAGAATGACTCCTGTAAGAG--CA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 79428 150 - 81011 TCCTTCTTACCCAGCGAAACTAGGCTGCTGTAGTTCTCCAGCATGACATCCTTGTATAAGTCCTTCTGACTGGGGTCCAGGAGTTGCCACTCCTTCTGGGTGAAGTCCACAGATAAATCCTCAAATGAGAATGCCTCCTGTAAAAGCATA i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3184463 148 + 42029645 TC--TCTTACCCAGTGAAACGAGGCTGCTATAGTTCTCCAACATTACATCCTTGTACAAGTCCTTCTGTCTGGCATCCAGGAGCTGCCATTCCTTCTGCGTGAAGTCCACAAATAAATCTTCAAATGACAATGCTTCCTGTAAGAATACA i canFam2.chr26 C 0 C 0 s echTel1.scaffold_158387 27 150 + 4141 CTTTTCTTACCCAGTGATATGAGGCTGCTGTAGTTCTCCAACATGACATCCTTGTATAAGTCCCTTTGATAGGAGTCCAACAGCTGCCATTCCTTCTGGGTGAAGTCCACAGATAAATCTTCAAATGATAAGGACTCCTGGAAGAGCACA i echTel1.scaffold_158387 N 0 C 0 s loxAfr3.scaffold_113 105402 150 - 3408981 CTTTTCTTACCCAATGACACTAGGCTGCTGTAGTTCTCTAACATGACATCCTTGTATAAGTTCTTCTGAGAGGGGTCCAGCAGCTGCCATTCCTTCTGGGTGAAGTCCACAGATAAATCTTCAAATGATAATGACTCCTGTAAGAGCACA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 24976 138 + 154172 ------------AGTGATACTAGGCTGCTATAGTTCTCCAACATGACATCTTTGTATAAGTCTTTCTGATAGGGGTCCAGTAGCTGCCATTCCTTCTGAGTGAAGTCCACAGATAAATCTTCAAATGATAATGACTCCTGTAAGAGCACA i dasNov2.scaffold_7587 I 1211 C 0 s xenTro2.scaffold_887 225325 150 - 314557 CTGCACTCACCCAGGGAAAGCACGCATTCGTAGTTCTCCGCCATGACGCTCTTGTACATGTCCCTCTGGGAGGGGCTCAGGCTTTCCCACTCGCTCCACGAGAAATAAACCGCAACGTCATCGAACGTCGGCGCCACCTGAGCAGGAACA i xenTro2.scaffold_887 C 0 n 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I a score=312764.000000 s hg19.chrUn_gl000223 58137 120 + 180455 ATCCTGGTAAATCTGAAGCAGTTAACACCG---TATGATGTGAGAAAAAAATATTGGAGCTTTAGCACT-TCA----------TTCTCATAAC---AAGTTATACAAAATGCCTACT-----ATGTCTCT--------ACCTTTGCATAT--- s rheMac2.chr11 194162 116 - 134511895 ATGCTAGTAAACCTGAAGCAGTTAACACTG---TATGATGTGAGAAAAAAATATTGGAGTTTGAGCACT-TTA----------TTCTCATAAC---AAGTTATACAAAATGCC---------ATGTCCCT--------ACCTTTGCATAT--- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 222345 120 - 136387465 ATCCTGGTAAATCTCAAGCAGTTAACACTG---TATGATGTGAGAAAAAAATATTGGAGCTTGAGCACT-TCA----------TTCTCATAAC---AAGTTATACAAAATGCCTACT-----ATGTCCCT--------ACCTTTGCATAT--- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185569 120 - 135371336 ATCCTGGTAAATCTGAAGCAGTTAACACTG---TATGATGTGAGAAAAAAATATTGGAGCTTTAGCACT-TCA----------TTCTCATAAC---AAGTTATACAAAATGCCTACT-----ATGTCCCT--------ACCTTTGCATAT--- i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 5386 120 - 51117 ATTCTAGTAAGTCTGAAGCAGTTATCAGTA---CATGACATGGGAAAGAAGTACTGGAGCTTGAGCACA-CTG----------TCCTCATAAC---AAGTTATGTAAAATACTTACT-----ATGCCCCC--------ATCTTTGCATAT--- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9672 117 + 26550 ATTCTACTAAGTCTGAAGCAGTCATCACTA---CACAATGTGGGAAAGAAGTACTAGAGCTTAAGCACA-TTG----------CTCTC---AC---AAATCATATAAAATACCTATT-----ATGTCTCT--------GTCTTTGTATAT--- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 18579 115 - 57811 ATTCTAGTAAATTCAAAGCAGTCATTACTC---TATGATGTGTGAGAG-AGTACGACAGCTTGAGCACA-TCA----------TTCTCATCATAG-AAGTTACACAGAATAACTATT-----CT-TCCCT--------ACCTTTG-------- i tupBel1.scaffold_103331.1-57811 C 0 I 1652 s cavPor3.scaffold_248 219642 114 + 667635 GCTATAGTAAATCTAAAACAGCACTTACTG---C---ATTCTAGGGAAA--------------GACAGATCAG----------AGCTCAGAGCCATGCTCTTTAC-TGTGACCTACA-----AAGCACCCAGATCACTACCTCTGCTGAG--- i cavPor3.scaffold_248 C 0 I 1 s speTri1.scaffold_84809 7435 108 - 11041 ATCCCAGTGAGCCGGAGGTGTTCATCACTG---CCTGATCCTGGAGAGGTGTGCCC-AGCTT-GACACA-CTG----------CTCTCACAACTGCACGTCACAC-AGACACCTACT-----ATGTCCCT----------------------- i speTri1.scaffold_84809 C 0 N 0 s oryCun2.chrUn0106 669959 122 + 1032594 ACT-TGGTAAATCTGAAGCAGTGATCACTG---CATGATGTGAAAAGAATATAACAGAGCTTAAGCACA-CTG----------TTCTCATCACAGTAGGTTATACAAAATGCCTACT-----ATGTCCTT--------GCTTTTTCTTTT--- i oryCun2.chrUn0106 C 0 I 325 s bosTau4.chr17 29958763 121 - 76506943 ATCCTAGTGAATCAGAAGCAGGAATCACCA---GGTGATGTAGGAAACAAGTACCAGAGCTTAAACACA-TCA----------TTCTTATCATGGCAAGTTAC--AGAATGTCTATT-----GGGTCCCA--------ACTTTTGCACTC--- i bosTau4.chr17 C 0 I 3 s equCab2.chr8 64139540 108 - 94057673 ATCCAG--GACTCTGAAGC-ATCGTCACTG---TGTGACGTGTGAGGGG------GGTACTGGGGCACA-CCA----------CTCTCATCAGAACAAGGCACGAAGAACCCCGAGT-----------CC--------ACCTCTGCATCA--- i equCab2.chr8 C 0 I 3 s felCat3.scaffold_141210 79578 112 - 81011 ACCCTGGTGAATCTGAAGCAATTATCACTC---TGAGAGATAGGAAAGA---ATTGGAGTGTAAGCACA-TTT----------TTCTCATCACAGCAAGTTATGGAGAATGACTG-------------TG--------TCCTTTGCACGG--- i felCat3.scaffold_141210 C 0 I 2 s canFam2.chr26 3184611 116 + 42029645 ATCCTGGTGAATCTGAAGCAATTAGTACTA---CACAAGGTGCAAAAGG---ACTGGAGCTTGAGCACG-TTA----------CTCTCACCA-AACAAGTTATGGAGAATAACTACT-----G---TCTC--------TCCTTTGCTAAA--- i canFam2.chr26 C 0 I 2 s echTel1.scaffold_158387 177 119 + 4141 ATCCTAGTCAATTTGAAGGCGTTAT--------CAGGACTTGGAAAAGAAGTATCAGGCCTTGGTCACA-GTA------------GTCATCTTAGCAAGACATAAGGGAGGCCTACT-----ATGTTCCT--------ATCATTGCATCCCAC i echTel1.scaffold_158387 C 0 C 0 s loxAfr3.scaffold_113 105552 129 - 3408981 ATCCTAGTAAATTAGAAGCAGTTATCACTTTCACATGATACAGGAAAGAGGTATCAGAGCTTGGGCACA-TCA----------TTGTCATCACAGCAAGATGTATACAATGTCTACT-----GCGCTCCA--------GCCTTTGCGTTATAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 25114 138 + 154172 ATCCTGGTAAACCTTAAGCAGTTATCCCTG---TGTCATATGGGAAATAAGTGT-ATAGCCTGAGCACA-TTGATGGTTATTATCATCATCATAGCATGTTATAAG-AATGCCAATTAACACATGTTCCC--------ATCTTTGCAT-ATAC i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=223967.000000 s hg19.chrUn_gl000223 58257 52 + 180455 TTTGTGTGATAAAATGTCATTGTG-CATTCTTCCATCCTTCCATTTATACAAC s rheMac2.chr11 194278 52 - 134511895 TTTGTGTGATAAAATGTCATTGTG-CATTCTTCCATCCTTCCATTTATACAAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 222465 52 - 136387465 TTTGTGTGATAAAATGTCATTGTG-CATTCTTCCATCCTTCCATTTATACAAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185689 52 - 135371336 TTTGTGTGATAAAATGTCATTGTG-CATTCTTCCATCCTTCCATTTACACAAC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 5506 52 - 51117 TTTGTGTGACAAAATGCCATTGTG-CATTCTTCCATCTTTCCATTTGTATAAC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9789 52 + 26550 TTTGTGTGACAAAATGCCACTGTG-AATTCTCACATCTTTCCATTTGTATAAA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s cavPor3.scaffold_248 219757 37 + 667635 GTTGGGCGATGAAAGGCCACTGTG-CATCTTTCCATTC--------------- i cavPor3.scaffold_248 I 1 I 4047 s oryCun2.chrUn0106 670406 44 + 1032594 TTAATGTGATAAAATGGCACTGTG-CATTC--------TTCTATTTATACAAC i oryCun2.chrUn0106 I 325 I 8 s bosTau4.chr17 29958887 51 - 76506943 TTTGTGAGATAAAAGGCAATTATG-CATTCTTTCATCCTCTCATTTACATGA- i bosTau4.chr17 I 3 I 86 s equCab2.chr8 64139651 49 - 94057673 TTTGCGGGGTGAAACGCCATGATG-TGTCCTTCCATCCCTCCATCTATAC--- i equCab2.chr8 I 3 C 0 s felCat3.scaffold_141210 79692 48 - 81011 TTTCTGTAATAAAACACAATGATG-CACTCTTCCACCCTTCCATAT----TAC i felCat3.scaffold_141210 I 2 I 260 s canFam2.chr26 3184729 43 + 42029645 TTTCTGGGATAAAATGCCATGTTG-CACTCTTCCA----TCCATAT----AA- i canFam2.chr26 I 2 I 1 s echTel1.scaffold_158387 296 53 + 4141 TCTGTGGGAGAAAACGTCACTGCACCAGTCTTCCACCCTTCCAGTCACACAAC i echTel1.scaffold_158387 C 0 C 0 s loxAfr3.scaffold_113 105681 52 - 3408981 TTTGTGGGAGAAAACGCCACTGTG-TATTCTTCTATCCTTCCATTTATGTAAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 25252 52 + 154172 TTTCTGGGAGAAAATGTCTTTGTG-CATTCTTCTACCTTTCCATTTACACAAC i dasNov2.scaffold_7587 C 0 I 54 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e tarSyr1.scaffold_38741 13075 1215 + 15302 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=16976.000000 s hg19.chrUn_gl000223 58309 23 + 180455 tgttaacctaaagattaaagaga---- s panTro2.chr12 185741 23 - 135371336 tgttaacctaaagattaaagaga---- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 222517 23 - 136387465 tgctaacctaaagattaaagaga---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 194330 23 - 134511895 tgttaacctgaagaataaagaga---- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_38741 14290 20 + 15302 ---CAACATACACAAATGAGAGA---- i tarSyr1.scaffold_38741 I 1215 N 0 s micMur1.scaffold_9962 5558 27 - 51117 TGTCAACCTAAATAGCAAATACAGAAA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9841 27 + 26550 tgtcaacctaaattgtaaacacagaga i otoGar1.scaffold_101698.1-26550 C 0 C 0 e echTel1.scaffold_158387 349 0 + 4141 C e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_141210 79740 260 - 81011 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e oryCun2.chrUn0106 670450 8 + 1032594 I e loxAfr3.scaffold_113 105733 0 - 3408981 C e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139700 0 - 94057673 C e canFam2.chr26 3184772 1 + 42029645 I a score=65366.000000 s hg19.chrUn_gl000223 58332 108 + 180455 gc--ctctccaga-agaaaatgatgtttgtttgggaacagagtactgccatgagaagacaggtgccatagtaaactacatgtgtatccagggaggtaaagaaagacgaagg s panTro2.chr12 185764 108 - 135371336 gc--ctctccaga-agaaaatgatgtttgtttgggaacagagtactgccatgagaagacaggtgccatagtaaactacatgtgtatccagggaggtaaagaaagacgaagg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 222540 108 - 136387465 gc--ctctccaga-agaaaatgatgtttgtttgggaacagagtactgtcatgagaagacacatgccacagtaaactacatgtgtatccagggaggtaaagaaagacgaagg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 194353 110 - 134511895 gaggctctccaga-agaaaattatgtttatttgggaacagagtactgccatgggaagacacgtgccacagtaaactacatgtgtattcagggaagtaaagaaagacaaagg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 5585 34 - 51117 --CGCACTCtaaa-------------------------------------------------------------cgatgtgtgtattcaggaaggaa-------------- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9868 109 + 26550 --ggtgctctaaaaaatacatgatatatacttgggaatggagtattgcaatgggaacatgtgtgccacagtaatctatgtgtgtatttggaaaggtaaaggaagacaaagg i otoGar1.scaffold_101698.1-26550 C 0 C 0 e echTel1.scaffold_158387 349 0 + 4141 C e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_141210 79740 260 - 81011 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e oryCun2.chrUn0106 670450 8 + 1032594 I e loxAfr3.scaffold_113 105733 0 - 3408981 C e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139700 0 - 94057673 C e canFam2.chr26 3184772 1 + 42029645 I a score=41879.000000 s hg19.chrUn_gl000223 58440 97 + 180455 tgtctacagCCAGtacggtcataccaccctcaacgcgcccagtctcgtccgttctcggaagctaagcagggtcgggcctggttagtacttagatggg s rheMac2.chr11 194463 78 - 134511895 tgtctaca---------gtcataccaccctcaatgcgccc----------ggtctcggaaactaagcagggtcgggcctggttattacttggatggg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 222648 97 - 136387465 tgtctacagCCATtacagtcataccaccctcaacacgcctggtctcgtctggtctcggaagctaagcagggtcgggcctggttagtacttggatggg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 185872 97 - 135371336 tgtctacagCCAGtacggtcataccaccctcaacgcgcccagtctcgtctggtctcggaagctaagcagggtcgggcctggttagtacttagatggg i panTro2.chr12 C 0 C 0 e echTel1.scaffold_158387 349 0 + 4141 C e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 5619 0 - 51117 C e felCat3.scaffold_141210 79740 260 - 81011 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e oryCun2.chrUn0106 670450 8 + 1032594 I e otoGar1.scaffold_101698.1-26550 9977 0 + 26550 C e loxAfr3.scaffold_113 105733 0 - 3408981 C e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139700 0 - 94057673 C e canFam2.chr26 3184772 1 + 42029645 I a score=24052.000000 s hg19.chrUn_gl000223 58537 32 + 180455 aagaaagacaaaagtttttaaaggaaaaaaat s panTro2.chr12 185969 32 - 135371336 aagaaagacaaaagtttttaaaggaaaaaaat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 222745 32 - 136387465 aagaaacacaaaagtttttaaaggaaaaaaac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 194541 32 - 134511895 aagaaagacgaaagtttttaaacgaaaaaaat i rheMac2.chr11 C 0 I 319 s micMur1.scaffold_9962 5619 31 - 51117 aaggaagacaaaaggttttaaaggaaaaaat- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9977 16 + 26550 ---------------ttttcaaggaaaaaat- i otoGar1.scaffold_101698.1-26550 C 0 C 0 e echTel1.scaffold_158387 349 0 + 4141 C e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_141210 79740 260 - 81011 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e oryCun2.chrUn0106 670450 8 + 1032594 I e loxAfr3.scaffold_113 105733 0 - 3408981 C e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139700 0 - 94057673 C e canFam2.chr26 3184772 1 + 42029645 I a score=290794.000000 s hg19.chrUn_gl000223 58569 299 + 180455 gaggtgcatcacataattgttttgaaacagttatccttggctacaaagatcaataacaagggtgacaccagtccaaagctggacaggcagctgctgggc-agatgtcccaataa-aagta-ttttttgtgtaaggcttcaatggcctttgtacgaggctgtggcttttgcagtcttttgtgataattt---ttatcaggcatgcaagtgtgagaacacttttttcacaggcttcccaagctctacctgtaggggtt--------aaaaaaatt------aacactagtgactccattttgattctgacaactttcacaG s panTro2.chr12 186001 299 - 135371336 gaggtgcatcacataattgttttgaaacagttatccttggctacaaagatcaataacaagggtgacaccagtccaaagctggacaggcagctgctgggc-agatgtcccaataa-aagta-ttttttgtgtaaggcttcaatggcctttgcacgaggctgtggcttttgcagtcttttgtgataattt---ttatcaggcatgcaagtgtgagaacacttttttcacaggcttcccaagctctacctgtaggggtt--------aaaaaaatt------aacactagtgactccattttgattctgacaactttcacaG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 222777 299 - 136387465 gaggggcatcacataattgttttgaaacagttatccttggctacaaagatcaataacaagggtgacaccagtccaaagctggacaggcagctgctgggc-agatgtcccaataa-aagta-ttttttgtgtaaggcttcaatggcctttgtacaaggctgtggcttttgcagtcttttgtgataattt---ttatcaggcatgcaagtgtgagaacacttttttcacaggcttctcaagctctacctgtagaggtt--------aaaaaaatt------aacactagtgactccattttgattctgacaactttcacaG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 194892 305 - 134511895 gaggtgcatcacgtaattgttctgaaacagttctccctggctacaaagatcaataataagggtgacaccagtccaaagctggacaggcagctgctgggc-agatgtcccaataa-aagta--tttttgtgtaaggcttcaatggcctttgtacaaggctgtggcttttgcagtcttttgtgataattt---ttatcaggcctgcaagtgtgagaacactcttttcacaggcttccccagctctacctgtcggggttaaaaaaaaaaaaaaatt------cacactagtgactccattttgattctgacga-tttcacaG i rheMac2.chr11 I 319 C 0 s micMur1.scaffold_9962 5650 302 - 51117 gaggagaattacataattgtttta-aataattaatcttggctataaagatcaacaacaggg-tgacaccagtccaaggttgaacaggcagtttcagggcaagatgtactcacagaaagtatttttttgtgtaaggttgcagtggcctttgtacaaggctgtggtttttgcaatcttgtgtggtattttttgttatcaaacatacaagcatgagaatcttctcttcatgggcttctctagctctatttgtcagggtt---------------tttaaaaaaacactagagaatccactttgattctgacaattctcacaC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 9993 293 + 26550 gaagagaattacataatcattttg-aataattagtcttggctacaaagatcaacaataaagttgacaccagtccaaggtcggacaggtagttttaggat-agatgtcctaacag-aagta-tttttcacgtagggctgcaatggcctttgtgcaaggttatggttttagcactcttttgtggtattttttgttatcaggcacacaag-gtgagaatcctctctttagggtattccctggctctatttgtcagttta---------------tt------aacattactgaatccacttggatgctgacaactttcataT i otoGar1.scaffold_101698.1-26550 C 0 I 88 e echTel1.scaffold_158387 349 0 + 4141 C e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_141210 79740 260 - 81011 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e oryCun2.chrUn0106 670450 8 + 1032594 I e loxAfr3.scaffold_113 105733 0 - 3408981 C e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139700 0 - 94057673 C e canFam2.chr26 3184772 1 + 42029645 I a score=77491.000000 s hg19.chrUn_gl000223 58868 51 + 180455 AAGACACGCAAACTGGAATAGGTGACTTTAAAC---CCCCTGAACCACCAATAA s equCab2.chr8 64139700 44 - 94057673 AATACATGAGAACTGGAAT----------ACATTCACTTACGAATCATGACCAA i equCab2.chr8 C 0 C 0 s panTro2.chr12 186300 51 - 135371336 AAGACATGCAAACTGGAATAGGTGACTTTAAAC---CCCCTGAACCACCAACAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223076 51 - 136387465 AAGACATGCAAACTGGAATAGGTGACTTTAAAC---CCCCTGAACCACCAATAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 195197 51 - 134511895 AAGACACACAAACTGGAATAGGAGACTTTAAAC---CCCCTGAACCACCAATAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 5952 38 - 51117 AACACATGAGAAC-------------TGTAAAT---CTCCTGAACCACCAACAA i micMur1.scaffold_9962 C 0 C 0 s echTel1.scaffold_158387 349 48 + 4141 ---ATACGAGACCTGACATAAGTGACTTTAAAC---CCTCTGAGCCACCAAGAA i echTel1.scaffold_158387 C 0 C 0 s loxAfr3.scaffold_113 105733 48 - 3408981 ---ATATGAGAGTCGGAATAGGTGACCTTAAAT---CCTCTCAGACACCAAAAA i loxAfr3.scaffold_113 C 0 C 0 s oryCun2.chrUn0106 670458 38 + 1032594 -------------GGGAATAGGTAAATATACAT---TCATGGAAGAAATAGCAA i oryCun2.chrUn0106 I 8 C 0 s felCat3.scaffold_141210 80000 22 - 81011 -----------------------------AAAT---CTTCTGAACCACCAACAA i felCat3.scaffold_141210 I 260 C 0 s canFam2.chr26 3184773 48 + 42029645 ---ACATGGCAACTGAAATTCATAATTTTAAAT---CTTCTGAACCACCAACAA i canFam2.chr26 I 1 C 0 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 18694 1652 - 57811 I e otoGar1.scaffold_101698.1-26550 10286 88 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I a score=104782.000000 s hg19.chrUn_gl000223 58919 69 + 180455 AATCTTTACTGAACCTCAAATTT----GGCACTGG--AAGAGGTAG----TAGCAAAAGAAAGAAAATAGGATA---ggcaa s panTro2.chr12 186351 69 - 135371336 AATCTTTACTGAACCTCAAATTT----GGCACTGG--AAGAGGTAG----TAGCAAAAGAAAGAAAATAGGATA---ggcaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223127 69 - 136387465 AATCTTTACTGAACCTCAAATTT----GGCACTGG--AAGAGGCAG----TAGCAAAAGAAAGAAAATAGGATA---ggcaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 195248 69 - 134511895 AATATTTACTGAACCTCAAATTT----GGCACTGG--AAGAGGAAG----TAGCAAAAGAAAGAAAATAGGATA---ggcaa i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 5990 64 - 51117 AATATTTGCTGGATCTCAAATTT----GGCACTGA--AAGAGGTAG----TAGCAAAAGAAACATGATAAAATA-------- i micMur1.scaffold_9962 C 0 I 544 s tupBel1.scaffold_103331.1-57811 20346 59 - 57811 AATATTTTTTAACACTCAAATCT----GACCATGA--AAAAGGTAT----TAGCAAAAGAAAGCTAATA------------- i tupBel1.scaffold_103331.1-57811 I 1652 I 2323 s otoGar1.scaffold_101698.1-26550 10374 57 + 26550 --------ctggagctcaagacc----agc-ctgagcaagagtgagtctctactaaaagtagc-tg-----------ggtat i otoGar1.scaffold_101698.1-26550 I 88 C 0 s oryCun2.chrUn0106 670496 51 + 1032594 AATATTTACTGAATGTCCAATTT----ATCAATGG--AAGACATAG----TAGTAAAATAA--------------------- i oryCun2.chrUn0106 C 0 I 8015 s equCab2.chr8 64139744 53 - 94057673 AATATTTACTGAACCTCAGACTT----GGCACCAG--AAGAGGCAG----TAGCAAAAGAAAG------------------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 80022 57 - 81011 AATATTTACTGAACCTCAAATCT----GCCACCGG--A-GAGGTGG----TACCCCAAAAAAGGTAAT-------------- i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3184821 39 + 42029645 AATACTTACTGAACCTCAACTTT----AGCACCAG--A--AAGTGG----T------------------------------- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 105781 76 - 3408981 CATACTTACCAAACTTCAAATGTGTCAGACACTGG--AAGAGGTGG----TAGCAACAGAAAGATAAAAACAAAATACTCAA i loxAfr3.scaffold_113 C 0 I 14 s echTel1.scaffold_158387 397 55 + 4141 TGTATTTACTGAACTTC--ACGTGTCAGGCACCAC--AGGAGGTGG----CAGCAAGGAAAAG------------------- i echTel1.scaffold_158387 C 0 N 0 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I a score=54234.000000 s hg19.chrUn_gl000223 58988 99 + 180455 ggtggctcacacctataatcccagc-acttt-ggaggccaatgcgggaggatcacttgtgcccaaaagtttgagaccaaactaagtaatacagtgagaccT s panTro2.chr12 186420 99 - 135371336 ggtggctcacacctataatcccagc-acttt-ggaggccaatgcaggaggatcacttgcgcccaaaagtttgagaccaaactaagtaatacagtgagacct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223196 99 - 136387465 ggtggctcacacctataatcccagc-acttt-ggaggccaacgcgggaggatcacttgcgcccaaaagtttgagaccaaactaagtaatacagtgagacct i ponAbe2.chr12 C 0 I 10 s rheMac2.chr11 195317 97 - 134511895 gggggctcacaactataatcccagc-actttgggaggccaacacgggaggatcacttgagcccaaaagtttgagaccaaactgagtaatatagtgaga--- i rheMac2.chr11 C 0 I 14 s otoGar1.scaffold_101698.1-26550 10431 81 + 26550 tgtggcaggcacctgtg---ccagctgctca-ggaggctaaagcaagaggttcactcaagtccaagagtctgaagctgctgtgag---------------- i otoGar1.scaffold_101698.1-26550 C 0 I 125 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 6054 544 - 51117 I e felCat3.scaffold_141210 80079 0 - 81011 C e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139797 0 - 94057673 C e canFam2.chr26 3184860 0 + 42029645 C a score=5717.000000 s hg19.chrUn_gl000223 59087 69 + 180455 GTATtatatatatatataaataatataatacataatataatatataatataaatattatattaaaaata s panTro2.chr12 186519 69 - 135371336 gtattacatatatataaaaataatacaaTACataatataatacataatataaatattatattaaaaata i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 6054 544 - 51117 I e felCat3.scaffold_141210 80079 0 - 81011 C e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10512 125 + 26550 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e ponAbe2.chr12 223295 10 - 136387465 I e rheMac2.chr11 195414 14 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139797 0 - 94057673 C e canFam2.chr26 3184860 0 + 42029645 C a score=-6242.000000 s hg19.chrUn_gl000223 59156 45 + 180455 ------------------------atataatatataatataaatattatattaaaaataatatataaat s panTro2.chr12 186588 13 - 135371336 ------------------------atataatatataa-------------------------------- i panTro2.chr12 C 0 C 0 s micMur1.scaffold_46742 4994 34 + 5530 gaaaaaaattagccagtcaacta---aaaatagaaac-------------------------------- i micMur1.scaffold_46742 n 544 n 544 s otoGar1.scaffold_101698.1-26550 10637 14 + 26550 -----------------------cagatgataccaaa-------------------------------- i otoGar1.scaffold_101698.1-26550 I 125 I 1 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_141210 80079 0 - 81011 C e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e ponAbe2.chr12 223295 10 - 136387465 I e rheMac2.chr11 195414 14 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139797 0 - 94057673 C e canFam2.chr26 3184860 0 + 42029645 C a score=-2151.000000 s hg19.chrUn_gl000223 59201 33 + 180455 atatataatataaatatcata--------tatatataatat---------------- s panTro2.chr12 186601 16 - 135371336 -------------atat------------tatatataatat---------------- i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 10652 57 + 26550 ggatctaccatgagtgtcatagggagtctcatagagaggaaagagtgagcatggtgg i otoGar1.scaffold_101698.1-26550 I 1 C 0 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e felCat3.scaffold_141210 80079 0 - 81011 C e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e ponAbe2.chr12 223295 10 - 136387465 I e rheMac2.chr11 195414 14 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139797 0 - 94057673 C e canFam2.chr26 3184860 0 + 42029645 C a score=100762.000000 s hg19.chrUn_gl000223 59234 174 + 180455 aaaatatat----ataaatattagctgggtatggtgacatatgccagtagtcccagttacttgggaggctgagatgggaagactgtttga-ccctgggaggtcgaggcgtcagtgagctgtgattgcaccactgcactgcagcttgagtgacagagtgagaccccatctcaaaaacaaa s panTro2.chr12 186617 174 - 135371336 aaaatatat----ataaatattagctgggtatggtgacacatgccagtagtcccagttacttgggaggctgagatgggaagactgtttga-ccctgggaggtcgaggcatcagtgagctgtgattgcaccactgcactgcagcttgagtgacagagtgagaccccatctcaaaaacaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223305 174 - 136387465 aaaaaatat----ataaatattagttgggtatggtgacacatgccagtagtcccagctacttcggaggctgagatgggaagactgcttga-ccctgggaggtcgaggcatcagtgagctgtgattgcaccaccgcactgcagcttgggtgacagagtgagaccccatctcaaaaacaaa i ponAbe2.chr12 I 10 C 0 s rheMac2.chr11 195428 173 - 134511895 aaaatatat----ataaatattagctggatatggtggtacatgccagtagtcccagttacttgggaggctgaggtgggaagactgcttga--cctgggaggtcggggcttcagtgagctgtgattgcaccactgcactgccacttgggtgacagagtgagaccccatctcaaaaacaaa i rheMac2.chr11 I 14 C 0 s otoGar1.scaffold_101698.1-26550 10709 145 + 26550 aaaaaacatttcaagaaatgaAggctgggcactgtgcctcatgcctgtaatcctagc-acttaggaggccaaggcaggtggattgtctgagctcatagggtttgagac-------------------------------cagcctgagccaga-agtgagaccttgtctctaaaaaaa- i otoGar1.scaffold_101698.1-26550 C 0 I 4492 e dasNov2.scaffold_7587 25304 54 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e felCat3.scaffold_141210 80079 0 - 81011 C e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29958938 86 - 76506943 I e equCab2.chr8 64139797 0 - 94057673 C e canFam2.chr26 3184860 0 + 42029645 C a score=11803.000000 s hg19.chrUn_gl000223 59408 33 + 180455 CCAATACACTAAAATACCAAGAAGGAAAATAAT--- s canFam2.chr26 3184860 16 + 42029645 CCAAC-----------------AGAAATATAAT--- i canFam2.chr26 C 0 C 0 s rheMac2.chr11 195601 33 - 134511895 CCAATACACAAAAATGCCAAGAAGGAAGATAAC--- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 223479 33 - 136387465 CCAATACGCTAAAATACCAAGAAGGAAAATAAT--- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 186791 33 - 135371336 CCAATACACTAAAATACCAAGAAGGAAAATAAT--- i panTro2.chr12 C 0 C 0 s dasNov2.scaffold_7587 25358 30 + 154172 ------CACTAGAAGAAGAGGGAGCAATAGAAAAAC i dasNov2.scaffold_7587 I 54 C 0 s bosTau4.chr17 29959024 14 - 76506943 -------------------aaaagaaagataat--- i bosTau4.chr17 I 86 C 0 s equCab2.chr8 64139797 5 - 94057673 ----------------------------ATAAT--- i equCab2.chr8 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e felCat3.scaffold_141210 80079 0 - 81011 C e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=57419.000000 s hg19.chrUn_gl000223 59441 32 + 180455 AAAATAATACTCTCAAAAGTCGCATTGTCTTA s panTro2.chr12 186824 32 - 135371336 AAAATAATACTCTCAAAAGTCGCATTGTCTTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223512 32 - 136387465 AAAATAATACTCTCAAAAGTCACATTGTCTTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 195634 32 - 134511895 AAAATAATACTTTCAAAAGTCACATTGTCTTA i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29959038 31 - 76506943 aaaacaatatcctcaaaaacttcttagg-ttg i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64139802 32 - 94057673 AAAACAATATCCTAAAAACCTGCTTGGTCTTG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 80079 32 - 81011 AACACAATACCCTAAAAAACTGCATAGTCTCG i felCat3.scaffold_141210 C 0 C 0 s canFam2.chr26 3184876 32 + 42029645 AAAACAATACCCTAATGAGCTACGTAGCCTTG i canFam2.chr26 C 0 C 0 s dasNov2.scaffold_7587 25388 32 + 154172 AAAACAATATCCTCAAAAACTGCTTAGATTTG i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 105857 14 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=46256.000000 s hg19.chrUn_gl000223 59473 28 + 180455 CAGAGGGCTGCAAATATGCACTTACAAA-- s panTro2.chr12 186856 28 - 135371336 CAGAGGGCTGCAAATATGCACTTACAAA-- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223544 28 - 136387465 CAGAGGGCTGCAAATATGCACTTACAAA-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 195666 28 - 134511895 CAGAGGGCTGCAAACATGCACTTACaaa-- i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29959069 28 - 76506943 tagacatacacaaatatgtacacttata-- i bosTau4.chr17 C 0 I 2 s equCab2.chr8 64139834 28 - 94057673 TAGAGGGCAGTAAATATGCACACCTATA-- i equCab2.chr8 C 0 I 2 s felCat3.scaffold_141210 80111 27 - 81011 TAGA-GGCTACAAATATATACGCCTATT-- i felCat3.scaffold_141210 C 0 I 2 s canFam2.chr26 3184908 28 + 42029645 TGGAGGGCTGCACACATACACATCTATT-- i canFam2.chr26 C 0 I 194 s loxAfr3.scaffold_113 105871 30 - 3408981 CAGCGGGCTGCAAATGTGTACACATATAAA i loxAfr3.scaffold_113 I 14 C 0 s dasNov2.scaffold_7587 25420 30 + 154172 CAGATGGCTGCAAACTTGTATGTCCACAAA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=42866.000000 s hg19.chrUn_gl000223 59501 54 + 180455 TAAAA-TAAACT--TATAGTAACTAAGAA--A---TAAAGGAGAGCA------CAGTGTGGATAAAAA s panTro2.chr12 186884 54 - 135371336 TAAAA-TAAACT--TATAGTAACTAAGAA--A---TAAAGGAGAGCA------CAGTGTGGATAAAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223572 54 - 136387465 TAAAA-TAAACT--TATAATAACTAAGAA--A---TAAAGGAGAGCA------CAGTGTTGATAAAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 195694 54 - 134511895 taaaa-taaatt--tataataaCTAAGAA--A---TAAAGGAGAATA------CAGTGTGGATAAAAA i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29959099 62 - 76506943 taaag-caagctgctttaagagttgaggc--a---gaaaggccagtgagggcatgacatgggtcagag i bosTau4.chr17 I 2 C 0 s equCab2.chr8 64139864 52 - 94057673 TAAAA-GAAGCTGTTACAACA----------A---GAAATGAAggggctgg--ccctgcggctgagag i equCab2.chr8 I 2 I 267 s felCat3.scaffold_141210 80140 41 - 81011 TAAAA-TAAGCTGCTGT---AGCTGAGGC--A---------------------CCACATGGGTCAAAG i felCat3.scaffold_141210 I 2 C 0 s canFam2.chr26 3185130 61 + 42029645 TAAAA-CAAGGTATTTTAACAGCTGAGAC--A---AAAATGAAGGGAAGGT-GTAACGTGGGTCAAAA i canFam2.chr26 I 194 C 0 s loxAfr3.scaffold_113 105901 61 - 3408981 TAAAA-TAAGGTGTTATAATAGCAAAAACTGAAAGGAAGAGAGAGTA------CAATGTGGATAAGAT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 25450 60 + 154172 TGAAACTGAAGTATTAAAATAGATAAAAC--AACTGAAGAAGGGGTA------CAATATGGGTAACAA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=57369.000000 s hg19.chrUn_gl000223 59555 56 + 180455 GCAGGCAGCACTTCACTCT-ATTTGAGTGTAGAGTTAGGCTCTACGGAAAAGGTAAA s panTro2.chr12 186938 56 - 135371336 GCAGGCAGCACTTCACTCT-ATTTGAGTGTAGAGTTAGGCTCTATGGAAAAGGTAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223626 56 - 136387465 GCAGGCAGCACTTCACTCT-ATTTGAGTGTAGAGTTAGGCTCTATGGAAAAGGTAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 195748 41 - 134511895 GCAGGGAGCGCTTCACTC----------------TTAGGCTCTATGCAAAAGGTAAA i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29959161 53 - 76506943 --agggagcccagcactc--catctatggtcatatcagtctctattgaagagatgat i bosTau4.chr17 C 0 I 1 s equCab2.chr8 64140183 57 - 94057673 GCAGGGAGGGCACTGCCCTGCTTCGGAGGTTAAATTGGGCTCTATGCAAGAGGTAAA i equCab2.chr8 I 267 I 1 s felCat3.scaffold_141210 80181 51 - 81011 -CAAGGACAGCTTCAATTT-----CGGTGTCAACTCGggctctctgcaagaggtaaa i felCat3.scaffold_141210 C 0 I 1 s canFam2.chr26 3185191 49 + 42029645 -TGAGGAGAGCATCAGTG-------AATGTCAACTTGCGCTATTTGCAAGAGGTAAA i canFam2.chr26 C 0 I 221 s loxAfr3.scaffold_113 105962 56 - 3408981 GCAAGCAGAGTATAATTCT-ATTGGAGAGCTTCAAATAAGTCTATGAAAGAAGTAAA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 25510 56 + 154172 ACAGTGAGAGCACCATTCT-ATGGGAGAATGTTGTTAGGCTCCATGAAAGAGGTAAA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=231475.000000 s hg19.chrUn_gl000223 59611 206 + 180455 -ATTGAAAT-GGGTTTTAG---AAAATTAGT--TGTTTTCCAC--------AAAAAAAAGAGGATGCAAAGACATTCTGGGAGGCAGCAGCT------CTGATTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCTGTGAGGACTGAAGAGATACAAAAACATCAGTCTGACAGGATAATAGGGAATGGGATAGTGATGAGATT-AAAGGCCA-CAGTGGGG- s panTro2.chr12 186994 187 - 135371336 -ATTGAAAT-GGGTTTTAG---AAAATTAGT--TGTTTTCCAC--------AAAAAAAAGAGGATGCAAAGACATTCTGGGAGGCAGCAGCT------CTGatttaaaaaaaaaaaaaaaaa-------------------CTGTGAGGACTGAAGAGATACAAAAACATCAGTCTGACAGGATAATAGGGAATGGGATAGTGATGAGATT-AAAGGCCA-CAGTGGGG- i panTro2.chr12 C 0 I 1 s ponAbe2.chr12 223682 192 - 136387465 -ATTGAAAT-GGGTTTTAG---AAAATTAGT--TGTTTTCCACA-------AAAAAAAAGAGGATGCAAAGACATGCTGGGAGGCAGCAGCT------CTGATTTAAaaaaaaaaaaacaaa-----------aacaaaaacTGTGAGGACTGAGGAGACACAAAAGCA----TCTGACAGGATAATAGGGAATGGGACAGTGACGAGATT-AAAGGCCA-CAGTGGGG- i ponAbe2.chr12 C 0 I 1 s rheMac2.chr11 195789 187 - 134511895 -ATTGAAAT-GGGTTTTAG---AAAATTAGT--TGTTTTCCAC---------AAAAAAAGAGGAGGCAAAGGCGTTCTGGGAGA-AGCAGCT------TTGATTTAAAAAACAAAAACAAAA-----------------AACTGTGAGGACTGAGGAGATACAAAAACATCAGTCTGACAGGATAATAGGGAATGGGATAGTGATGAGATT-AAAGGCCA-CAGTGGGG- i rheMac2.chr11 C 0 I 1 s bosTau4.chr17 29959215 182 - 76506943 -catgaaataaagttttag---gaaattagtagtggtttccag----------agaaaagggggtacaaaagcattctgagtgacagcagat------cca-------aaATGGGGACCC-A-----------------AACTGCTAGGGGTAACACAGTATAAACAGTTCAGTCAGACAAGGTCACAGGGTACATTGTAGTGACTGGACT-GCAGGCCA-CAGTGGGA- i bosTau4.chr17 I 1 C 0 s equCab2.chr8 64140241 182 - 94057673 -TTTGAGGT-GAGTTCTAG---GAAATTAGCAGTGTTTTCCAC----------AAAAAAAGGGGTACAAAGGCATTCTGGAAGATGACAGCT------GCA-------CTACGGGATCCAAA-----------------AATGGCTAGGGGTGAGGAGGTGCAAACAGGTGAATGAGACAGGACCACAGGGTGTGGAGCAGTGATCAGACC-AGAGGCCAGCA-TGGGA- i equCab2.chr8 I 1 I 4 s felCat3.scaffold_141210 80233 181 - 81011 -cctgaggt-gagttttaa---gaaattagcaatgctttccac---------aaaaaaaggaggtgcaaaggcattctgggagccaacagct------cca---------atgaaaccccaa-----------------aaccaggagagttgaggagatacaaacagttcagtTAGATAAGAACACAAGGTACAAAGTAGTAATTAGATTGAAAGGCCA-CA-TGGGG- i felCat3.scaffold_141210 I 1 I 4 s canFam2.chr26 3185461 182 + 42029645 -ACTGTGAT-GAGTTTTAAAAGGAAATTAGCAATGCTTTTCAC----------AAAAATGGGGGTGCAAAGGGATTCTGGCAGCCAACAACT------CTG---------ATGAGACCTCAA-----------------AACTGCTAGTGTTCAGGAGGTGCTAACAGTTCAGTTAGATAAGATCAAAGGGTGCAAGGTGGTGATTAGATT-AAAGGCCA-CA-GGGGA- i canFam2.chr26 I 221 I 4734 s loxAfr3.scaffold_113 106018 191 - 3408981 GCTTGAATT-GAGTTTTAG---GAGACTAGCAATGTTTTCAACAATAGCAGCAACAACAGAAAATGCAAAGGCATTCAGGCGGC-AGCAGCT------CTG--------GAAAACACCAAAA-----------------CATCATTAGGGTTGAGGGGGTACAAATGGTTTATTCAGATGGGAGAAGAAGGTGTGTGGCAGACAGT-GATT-AAGGGCCA-AAATGGATG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 25566 161 + 154172 GCCTGAGTT-GACTTTTAA---GA-------------------------------AATAGGACACATAAATGCACACATGCAAA-TGTACCTAAGATACAG--------GAAGA----AAAA-----------------AACGCTAAGGGTTGAGGTGTTACAAACATTTCAG--AAACAGGGTAACAGGGATTGGCACAGGGACTGGATT-AAAGCCCA-CGAGGGGAG i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=112028.000000 s hg19.chrUn_gl000223 59817 106 + 180455 CTGGGGCAGAATGTGGTTAGCTTAGCTAGGAC--ACTTTCTTGTTG---CCA--AGTTAGCCATCAAAGACCTTACAAGAAAGGGAATGATAGAACCAAA--CAGATTTTAGAAA s panTro2.chr12 187182 106 - 135371336 CTGGGGCAGAATGTGGTTAGCTTAGCTAGGAC--ACTTTCTTGTTG---CCA--AGTTAGCCATCAAAGACCTTACAAGAAAGGGAATGATAGAACCAAA--CAGATTTTAGAAA i panTro2.chr12 I 1 C 0 s ponAbe2.chr12 223875 106 - 136387465 CTGGGGCAGAATGTGGTTAGCTTAGCTAGGAC--ACTTTCTTCTTG---CCA--AGTTAGCCATCAAAGACCTTACAAGAAAAGGAATGACAGAACCAAA--CAGATTTTAGAAA i ponAbe2.chr12 I 1 C 0 s rheMac2.chr11 195977 106 - 134511895 CTGGGGCAGAAAGTGGTTAGTTTAGCTAGGAC--ACTTTCTTGTTG---CCA--AGTTAGCCATGAAACACCTTACAAGAAAGGGGATGATAGAACCAAA--CAGATTTTAGAAA i rheMac2.chr11 I 1 C 0 s bosTau4.chr17 29959397 99 - 76506943 GCAAGGCAGAT-GTGGTTACC---------AC--ACCTTATCACTG---CTGACAATTAGCCATTAGAGCTTTTACAGG-ATGGAAGTGATATAACTTAATTTAGGTTGCAGAAA i bosTau4.chr17 C 0 I 357 s equCab2.chr8 64140427 96 - 94057673 GCGGG--------TAGCCAACATGGCT-GGAC--ACTT----GCTG---CCGACAGTCCGCCAGGGAAGATTTTACAGC-ACGGGAGTGACATAACCAAATTTAGGCTTAAGAAA i equCab2.chr8 I 4 C 0 s felCat3.scaffold_141210 80418 102 - 81011 GGGGGGCAGAC--TGGTTAACAGAGAT-AGAC--ACTTTCTCGTTG---CCAACAGCTAGCCAT----GATTCCATGAG-ATGGGAGAGATATAACCAAATCTAGGTTTTAGAAA i felCat3.scaffold_141210 I 4 C 0 s loxAfr3.scaffold_113 106209 113 - 3408981 GGAAGGCAGACTGTGGCTGACA-GTTC-ATACTGTCTTGTTTCTTGTTGCCAATAGAAGGCCATGCAACGTTTTATAGGAAGGGGGGTAACATGATTAACGTTAGGTGTTAGAAT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 25727 108 + 154172 GCATGACGGACTGCGATTAACACGGCC-AGAC--TCTTTCTTCTTGT--CCA--AGTTATCCATGACAGATTTTATAGGAAAAGGATTGACATAACCAGATTTAGGTTTTAGAAA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e canFam2.chr26 3185643 4734 + 42029645 I a score=86492.000000 s hg19.chrUn_gl000223 59923 46 + 180455 GGTGACTAGATTTTGG--ATCAAGATGGATTTCTGTCTCAAAGTCTCC s panTro2.chr12 187288 46 - 135371336 GGTGACTAGATTTTGG--ATCAAGATGGATTTCTGTCTCAAAGTCTCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 223981 46 - 136387465 GGTGACTAGATTTTGG--ATCAAGATGGATTTCTGTCTCAAAGTCTCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 196083 46 - 134511895 GGTGACTAGATTTTGG--ATCAAGATGGATTTCTGTGTCAAAGTCTCC i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29959853 46 - 76506943 GATATCTGGATTTTAA--ATCAAGATGGATTTCTGTCCCAAAGTCTTC i bosTau4.chr17 I 357 C 0 s equCab2.chr8 64140523 46 - 94057673 GGTTTCTGGATTTCAC--ATCAAGATGGATTTCTGACCCAAAGTCTCC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 80520 35 - 81011 GGTTTCTGGATTT-AG--GTCAAGATGGATTTCCATCT---------- i felCat3.scaffold_141210 C 0 I 249 s loxAfr3.scaffold_113 106322 48 - 3408981 GGTGACTGGACTTTGATCGACACGGTGGATCACTTTTCCGTAGTTCCC i loxAfr3.scaffold_113 C 0 I 2732 s dasNov2.scaffold_7587 25835 46 + 154172 TGTGACTGGACTTTGG--AACAAGGTGGATTTCTGTCTCCAAATCTCC i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e canFam2.chr26 3185643 4734 + 42029645 I a score=179209.000000 s hg19.chrUn_gl000223 59969 194 + 180455 TAAGATAAAAAGAAAACACAAGCACACATCTTTTAAAAATCTAGAATGCCACCAGAAAATCAAAAAATAAATTTGACCCTCA-CAGCACACAATATACTTTAAG-AGAagtcagagaatttgaag-----acagatcaacagaaactgt-----------------tttgaacagac-------agaaaatgacttaaaaa---tgaa----cagagctcatgacactatca s panTro2.chr12 187334 198 - 135371336 TAAGATAAAAAGAAAACACAAGCACACATCTTTTAAAAATCTAGAATGCCACCGGAAAATCAAAAAATAAATTTGACCCTCA-CAGCACACAATACACTTTAag-agaagtcagagaatttgaag-----acagatcaacagaaactgtca-------------gttttgaacagac-------agaaaatgacttaaaaa---tgaa----cagagctcatgacactatca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 224027 198 - 136387465 TAAGATAAAAAGAAAACACAAGCACACATCTTTTAAAAATCTAGAATGCCACCGGAAAATCAAAAAATAAATTTGACCCTCA-CAGCACACGATACCCTTTAAG-aggagtcagagaatttgaag-----acagatcaacagaaactgtca-------------gttttgaaaaaac-------agaaaatgacttaaaaa---tgaa----cagagctcacgacactatca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 196129 198 - 134511895 TAAGATAAAAAGAAAACACAAGCACACATCTTTTAAAAATCTAGAATGCCACCGGAAAATCAAAAAATAAATTTGACCCTAA-TAGCACACGATACGCTTTAAa-aggagtcaaagaatttgaag-----acagatctacagaaactgtca-------------gttttgaacagag-------agaaaatgacttaaaaa---tgaa----cagagctcaggacactatca i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29959899 210 - 76506943 TAAGATGACAAGAAAGCATAAACATAC-TCTTTTAAAAATTCAAAATACCACCAGAAAAT-----AAGAAACCTGACTGTAAACAGCACATCacacactttgag-ag----tgatgaaagggaaaaatctacaa-tca----agaatactctgcctaccaaggaatcttgttcagatttgacagaaatcaaaaactttaaagactaaa----gaaaacctaaaagaattc-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64140569 192 - 94057673 TGAGATTACAAGAAAATGCAATCACAC-TC--TAAAAAATCCAGAATACTGTCGGAAAAT-----AAGAAACGTGACCATAAACAGCACACCACATACTCTgag-ag-agctggtgaacctgaag-----acag-tcaggggaaagcatcc-------------attttgagcaactgag----agaaaaagacctcaaaa---cgga----cagagctcaggacactgcca i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141210 80804 199 - 81011 GGAGATGATCAGAAAACA----TGCAC-TC--TCAATAATCCATAATAGCATCAGAAAAT-----AAGAAACCTGACTCTAAGCAGCACATCATACACTCTGAGaag-agctggtgaacctgaag-----acag-tca-ataaaagtaccc-------------attttgagcaactgaggaaaaaaaaaaaaacttaagagctcagacactcagggctcaggacactgtca i felCat3.scaffold_141210 I 249 N 0 s dasNov2.scaffold_7587 25881 186 + 154172 TGAAAGGACAAGAAAACACA--TACTCATATTTAACAACCTCAGAATATCATCAAA---------AAGAAATGTGACCATATATAGTACACCACAGACGTTAAG-aagagtcagtcaacttgagc-----tcag-aaaacaaaaacaatcc-------------attttgaacaacagag----agaaaaagacttaaaaa---tgaa----cagtgc----aaacctacaa i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e canFam2.chr26 3185643 4734 + 42029645 I a score=100661.000000 s hg19.chrUn_gl000223 60163 126 + 180455 aataataccaaagactctaatgtgagtgtcataggagtcccagaaagagaaaagaaagag------catggtgaa---------aataaagtctcaagaaatgatagctgaatattctgtaaaactggcaaa--------atatataaa s panTro2.chr12 187532 126 - 135371336 aataataccaaagactctaatgtgagtgtcataggagtcccagaaagagaaaagaaagag------catggtgaa---------aataaagtctcaagaaatgatagctgaatattctgtaaaactggcaaa--------agatataaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 224225 126 - 136387465 aataataccaaagactctaacacgagtgtcataggagtcccagaaagagaaaagaaagag------catggtgaa---------aacaaagtctcaagaaatgatagctgaatattctgtaaaactggcaaa--------agatataaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 196327 125 - 134511895 aataataccaaagaatctaacgtgagtgtcata-gagtcccagaaagagaaaagaaagag------catggtgaa---------aataaagtctcaagaaatgatagctgaatattctgtaaaactggcaaa--------agatataaa i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29960109 112 - 76506943 agcaccaccaaa----------ccagctttaca------------acaaatgacaaaggaatgtctcaaggtgaa--------aaagaaaATT--AAGAAACGA-----GAAAGTCCACCAGTAAAGGCAAACACACAGTAAAGCTGGT i bosTau4.chr17 C 0 I 11457 s equCab2.chr8 64140761 105 - 94057673 gataataccaga----------tgtaagttgcg------------ggagagaagaaagag------catggcgaa--------gaaagaagtttcaagaaatgatggctgaatgctctccagatgtggcaga--------agatctgag i equCab2.chr8 C 0 C 0 s dasNov2.scaffold_7587 26067 135 + 154172 aacagtaccaaaaggtctaacattcatgttatagaagtcacagaaagaaaaaataaaaag------tgaggttaaaaaaaaaaaaaaaaggtttcaagaaataacagctgaatgattcccaaatttgacaaa--------agatataaa i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e canFam2.chr26 3185643 4734 + 42029645 I a score=96317.000000 s hg19.chrUn_gl000223 60289 142 + 180455 ccaaaaaatt------caagaagttcagtgaatgccaggc---aataaacataaggaaatccatacccagacacatcat----aaATGGCCAGAAAG----------------------------------------AAAAAAAATCACATCACTTAAAGGGAACAGCAATTCAGATAACTGCAAAtttctttct s panTro2.chr12 187658 142 - 135371336 ccaaaaaatt------caagaagttcagtgaatgccaggc---aataaacataaggaaatccatacccagacacatcat----aaATGGCCAGAAAG----------------------------------------AAAAAAAATCACATCACTTAAAGGGAACAGCAATTCAGATAACTGCAAAtttctttct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 224351 142 - 136387465 ccaaaaaatt------caagaagttgagtgaatgccaaac---aataaacataaggaaatccatacccagacacatcat----aaATGGCCAGAAAG----------------------------------------AAAAAAAATCACATCATTTAAAGGGAACAGCAATTCAGATAACTGCAAAtttctttct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 196452 182 - 134511895 ccaaaacatt------caagaagttcagtcaatgccagac---aataaacatgaggaaatccactcccagacacatcat----acatggctagtgaggaaatccactcccagacacatcatacatggctagAAGGAAAAAAAAAATCACATCACTTAAAGGGAACAGCACTTCAGATAACTGCAAAtttctttct i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64140866 146 - 94057673 tctacagatt------caagcagctcagtgaatccccaacgggaataa-----aagaaatccatgacctggcatgtcatgatcagaccaccacaaaa-------------------------------------caaagaaaacgtggtgtcacttacaggg-acagcaatgcaaacgagtgcaaacttcttact i equCab2.chr8 C 0 I 4301 s dasNov2.scaffold_7587 26202 142 + 154172 cctacagatttgaaaatgaaaagctcagggaacccaaagc-cagataaaca-----aaatccaggttcaaacatacaac----aagctgctagaaag---------------------------------------tgagagagaatgtatcacttacagagaatagcaattcaaatgaaagcaaatttct---- i dasNov2.scaffold_7587 C 0 I 32771 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e canFam2.chr26 3185643 4734 + 42029645 I a score=230749.000000 s hg19.chrUn_gl000223 60431 448 + 180455 ttcttttttgagacagagttttgctctgtcacccaggctgcagtgcagtggcacaattatagctcgctgtaacctctgcctcctgggctcaggtgatcctcccacttcagctttctgagaaatggggactacaggtgcatgccaccacacccACTTAAtttctatttgtttgtttttgagacacagtcttgttctgtcacccaggctgaagtgcagtggcccaatctcagctcactgcaacctccgcctctcaggttcaagcaattctcctgcctcaacctcctgagtacctgggattacaggcacctgccactacgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctgctctcgaactcctgacgtcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccac s panTro2.chr12 187800 448 - 135371336 ttgttttttgagacagagttttgctttgtcacccaggctgcagtgcagtggcacaattatagctcgctgtaacctctgcctcctgggctcaggtgatcctcccacttcagctttctgagaaatggggactacaggtgtatgccaccacacccACTTAAtttctatttgtttgtttttgagacacagtcttgttctgtcacccaggctgaagtgcagtggcccaatctcagctcactgcaacctccgcctctcaggttcaagcaattctcctgcctcaacctcctgagtacctgggattacaggcacctgccactacgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctgctctcgaactcctgacgtcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 224493 448 - 136387465 ttcttttttgagacagagttttgctctgtcacccaggctggagtgcagtggcacaattatagctcgctgtaacctctgcctcctgggctcaggtgatcctcccacctcagctttctgagaaacggggactatagctgcatgccaccacacccagttaatttCTATTCGtttgtttttgagacacagtcttgttctgtcacccaggctggagtgcagtggcccaatctcagctcactgcaacctccgcctctgaggttcaagcaattctcctgccttagcctcctgagtagctgggattacaggcacctgccactacgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctgctctgggactcctgacgtcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 196634 446 - 134511895 ttcttttttgagacagagttttgctctgtcacccaggctggagtgcagtggcacaattatagctcgctgtaacctctgcctcctaggctcaggtgattctcccacctcagctttctgagaaactgggactacaggtgcatgccaccacacccagttaatttctgtttgtttgtttttcagacacagtcttactctgtcacccaggctggagtgcagtggcctgatcttggctcactacaacctccacctctcaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccacgcctgactaatttttgtatttttagtagagacgaggtttcacgatgttggccaggatggtctcaatctcttgacctca--tgatccgctctactcagcctcccaaagtgctgggattacaggtgtgagccac i rheMac2.chr11 C 0 I 2270 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64141012 4301 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=145501.000000 s hg19.chrUn_gl000223 60879 556 + 180455 cgtgcccagcTgagagtaagcaaattaatgattgtcttaggctggggtgggaagaggaattgaccaaaaatgtcacaaagattgttttggggtgaggaaaatcttctaaaactagattgtgatgatggttatacagcataagtttacttaaaaatcaatgaattatacattaaaatggtggatcttattgaggtcatacttcaataaagctgttaaaaagatattacaaacttatgccaacatacttgacaacttaagacgagatagctatattctttttttt---------tttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgcaatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggataacaggcgcctgccaccacgcccggctaattttttgtattattat-agagatgggctttcaccatgttggccaggatggtctcaatctcttaacctcgtgatctaccctactcggcctcccaaagtgctgggattacaggtgtgagccacc s panTro2.chr12 188248 556 - 135371336 cgtgcccagctgagagtaagcaaattaatgattgtcttaggctggggtgggaagaggaattgaccaaaaatgtcacaaagattgttttggggtgaggaaaatcttctaaaactagattgtgatgatggttatacagcataagtttacttaaaaatcaatgaattatacattaaaatggtggatcttattgaggtcatacttcaataaagctgttaaaaagatattacaaacttgtgccaacatacttgacaacttaagacgaaatagctatattctttttttt---------tttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgcaatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggataacaggcgcctgccaccacgcccagctaattttttgtattattat-agagatgggctttcaccatgttggccaggatagtctcagtctctttacctcgtgatctaccctactcggcctcccaaagtgctgggattacaagtgtgagccacc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 224941 562 - 136387465 cgtgcccggctgagagtaggcaaattaatgattgtcttaggctggggtgggaagaggaattgaccaaaaatgtcacaaagattgttttggagtgaggaaaatcttctaaaactagattgtgatgatggttatacagcataagtttacttaaaaatcactgaattatacattaaaatggtggatcttatggaggtcatacttcaataaagctgtt---aAGATATTACAAACTTGTGCCAACATACTTGACAACTT-AGACAAAATAGCTATAttcttttttttttttttttctttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggataacaggcgcctgccaccacgcccagctaattttttgtattattagaaaagatgggctttcaccatgttggccaggatggtctcaatctctggacctcgtgatccaccctactcttcttctcaaactgctgggattacaggagtgagccacc i ponAbe2.chr12 C 0 I 247 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64141012 4301 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=39308.000000 s hg19.chrUn_gl000223 61435 433 + 180455 acacctggccaaatagctatattctttgaaaaacaatgaacccaaagtaacaagaagaaacaaaatctgaattaatcctgtaactgctaaagaaactgatcccacaattttaaaactttccctcaaaaaaaatgcaagatctatgtagttttagtggtgattcttccaaacatttaCTTAAAATGATCTggccaggtgtgctggctcatgcctataatttcaactatttgatagggtgaggcaggagaattgtttgaggccaggagttccagaccagcgtgggcaatatagtgagaacctgtcactaccaaaaaaaaaaaaaaaaa-tttaaactagctgtacttagtagtaggtgcctgtagtcccatctacttgggaggctgaggtgggaggcatgtttgattccaggagttcaaggctgcagtgagctatg s panTro2.chr12 188804 433 - 135371336 gcacctggccaaatagctatattctttgaaaaacaatgaacccaaagtaacaagaagaaacaaaatctgaattaatcctgtaactgctaaagaaactgatcccacaattt-aaaactttccctcaaaaaaaatgcaagatctatgtagttttagtggtgattcttccaaacatttaCTTAAAATGATCTggccaggcgtgctggctcatgcctataatttcaactatttgatagggtgaggcaggagaattgtttgaggccaggagttccagaccagcgtgggcaatatactgagaacctgtcactaccaaaaaaaaaaaaaaaaaatgtaaactagctgtacttagtagtaggtgcctgtagtcccatctacttgggaggctgaggtgggaggcatgtttgattccaggagttcaaggctgcagtgagctatg i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e ponAbe2.chr12 225503 247 - 136387465 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64141012 4301 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=102460.000000 s hg19.chrUn_gl000223 61868 439 + 180455 attgtgccactgcactctagcctgggtgacagagtgagaccatgtctcttaaaacaaaaagaaaaaaaaaGTTATTGCTGATGTTTttgttaacatgaaaaatctaatcaaatctaaagaaaaa-tcattagaactaataagtaagcttaagaaattcctggccaggcgtggtggctcacacctgtaattgggaggccgaggcgggtggatcacaaggtcaggagttcaagacaagcctaaccaatatggtgaaaccccatctctactggaaaaaaaaaaaaaaa---tacaagaattagctgggtgtggtggcatacctgtaatcccaggtacttaggaggctgaggcaggagaactgctcgaacccgggaggcagaggttgcagtgagccaacactgtgccactgcactccagcctgggcaacagagtgagactctgcctc s panTro2.chr12 189237 442 - 135371336 attgtgccactgcactctagcctgggtgacagagtgagaccatgtctcttaaaacaaaaagaaaaaaaaaGTTATTGCTGATGTTTttgttaacatgaaaaatctaatcaaatctaaagaaaaa-tcattagaactaataagtgagcttaagaaattcctggccaggcgtggtggctcacacctttaactgggaggccgaggcgggtggatcacaaggtcaggagttcaagaccagcctaaccaatatggtgaaaccccatctctactgaaaaaaaaaaaaaaaaaaatacaagaattagctgggtgtggtggcatacctgtaatcccaggtacttaggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccaacactgtgccactgcactccagcctgggcaacagagtgagactctgcctc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 225750 436 - 136387465 ATTGTGCCATTACACTCTAGGGGGGGTGACGGATTGAGACCAAGTTTTTTAAAACAAAAA-AAAAAAAAAGTTATTGAAGAGGTTTGAGTTAATTTGAaaaatttaatcaaatataaaaaaaaagtca--agaattaataagtgagattaagaagttttaggccaggcgtggtggctcgcccctttaattgggaggccgaggcgggtggatcacgaggtcaggagtttgcggccagccggcccaatttggtgaaaccccatctttactaaaaaaaaaaaaaaaa----tacaagaattagctgggggtggtggcgcacctgtagtcccagctacttaggaggctgaggcaggagaattgcttgaacccaggaagtagaggttgcagtgagccaacattgtgccactgcactccagcctgggcaacagagtgagactctgcctc i ponAbe2.chr12 I 247 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64141012 4301 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=114491.000000 s hg19.chrUn_gl000223 62307 290 + 180455 aaaaaaaataaaaaaattaaaaa--------aataagttcccgtatacaaagtcaatatgccaaaatattgcgtatttccatgttttggcaagaaaattctttcaaa--taacaa----aatttcagataccatttactgtagaaatggctaacggcaggtctgggacaaaaagatta-aacctgtgccttgatagattctgtcatgctggaaagcagtgttctagctgatcaagaagaaatgatcaaagtaacctgtcaccattttgcaactcccaatgaaataatccatctatgcaatgatca s ponAbe2.chr12 226186 289 - 136387465 aaaaaaaaaaaaaagataaaaaa--------aaaaagttcctgtatacaaagtcaatatgccaaaatatagcgtatttccatgttttggcaagaaaattctttc-aa--taacaa----aatttcagataccatttactgtagAAATGGTTAATGGCAGGTCTAGGACAAAAAGATTA-AACCTGTGCCTTGATAGATTCTGTCATGCTGGAAagcagtgttctagctgatcaagaagaaatgatcaaagtaacatgtcaccattttgcaactcccagtgaaataatccatctatgcaatgatca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 189679 290 - 135371336 aaaaaaaataaaaaaattaaaaa--------aataagttcccgtatacaaagtcaatatgccaaaatattgcgtatttccatgttttggcaagaaaattctttcaaa--taacaa----aatttcagataccatttactgtagaaatggctaacggcaggtctgggacaaaaaggtta-aacctgtgccttgatagattctgtcatgctggaaagcagtgttctagctgatcaagaagaaatgatcaaagtaacctgtcaccattttgcaactcccaatgaaataatccatctatgcaatgatca i panTro2.chr12 C 0 C 0 s equCab2.chr8 64145313 293 - 94057673 agaaaaattattagaattaataagtgggcttaagaagttcctggatacaaagttaatatgcagaaatctagtatatttttatgttttgacaacaaaaaattttaaaaattaataaatacattttaagataccatttactgtagaaatggctaattgcaggtctggggcaaaaaatgtacaaactgagccttgatatatcttgccat--------GTagtattctagttaat----aagaaataacagaagtaggacgttattattttgcagcccctaaggaaataacccatctagtcaatgatca i equCab2.chr8 I 4301 I 208 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e canFam2.chr26 3185643 4734 + 42029645 I a score=17873.000000 s hg19.chrUn_gl000223 62597 81 + 180455 tTTAAAAAATGTTggccaggcgtagtggctcacacctgtaagtggctcaca-cactttggggggctaaggcaggcggattgc s panTro2.chr12 189969 77 - 135371336 tTTAAAAAATGTTggccaggcatagtggctcacacctgtaa-----tcccagcactttggggggctaaggcaggcggattgc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 226475 77 - 136387465 tTTAAAAAATGTTggccgggtgtagtggctcacacctgtaa-----tcccaacactttgggaggctaaggcaggcagactgc i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64145606 208 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=9993.000000 s hg19.chrUn_gl000223 62678 39 + 180455 ctgagctcagga-------------------------------------------------------gttcgcgaccagc----------ctgggcaacacagt s ponAbe2.chr12 226552 39 - 136387465 ctgagctcagga-------------------------------------------------------gttcgcaaccagc----------ctgggcaacacagt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 190046 39 - 135371336 ctgagctcagga-------------------------------------------------------gttcgcgaccagc----------ctgggcaacacagt i panTro2.chr12 C 0 C 0 s equCab2.chr8 64145814 104 - 94057673 ctgagcactggaaatgtggctagtgtgaatgacgaatttaatttaattaatttaaatttaaacagtcgtttgtggccagtggcttctgtactggacagcacagC i equCab2.chr8 I 208 I 286 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e canFam2.chr26 3185643 4734 + 42029645 I a score=18727.000000 s hg19.chrUn_gl000223 62717 71 + 180455 gaaaccccgtctctgctaaaatacaaaaaattagccaggcgtgggagcgtgcgcctgtagtcccagctact s ponAbe2.chr12 226591 71 - 136387465 gaaaccccgtctctgctaaaatagaaaaaattagcccggtgtgggagcatgcgcctatagtcccagctact i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 190085 71 - 135371336 gaaaccccgtctctgctaaaatacaaaaaattagccaggcgtgggagcatgcgcctgtagtcccagctact i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 197080 2270 - 134511895 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64145918 286 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=50006.000000 s hg19.chrUn_gl000223 62788 107 + 180455 caggagaatcgcttgaaccctagaggcagaggttgcagtgagctgagattgtgccattgcactccagcctgggtgacagagtgagactccatctcaaaaaaaaataa s rheMac2.chr11 199350 105 - 134511895 caggagaatcacttgaacccgggaggcagaggttgcggtgagccaagactgcaccattgcactccagcct-ggcgacagagtgagactctgtctc-aaacaaaataa i rheMac2.chr11 I 2270 C 0 s ponAbe2.chr12 226662 106 - 136387465 caggagaatcgcttgaacccgagaggcagaggttgcagtgagctgagattgtgccattgcactccagccagggtgacagagtgagactccatctc-aaaaaaaataa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 190156 107 - 135371336 caggagtatcgcttgaaccctagaggcagaggttgcagtgagctgagatggtgccattgcactccagcctgggtgacagagtgagactccatctcaaaaaaaaataa i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_46742 5028 544 + 5530 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e bosTau4.chr17 29960221 11457 - 76506943 I e equCab2.chr8 64145918 286 - 94057673 I e canFam2.chr26 3185643 4734 + 42029645 I a score=131302.000000 s hg19.chrUn_gl000223 62895 162 + 180455 aaaataaagaaGCCACCTCAACTGGGGGAAGGACTGCAGTTGCAATTGCAGtgaatgcc----acaaaatgtgaagt-gaaagaag----acagaagtgagcatacactacaacagacaaaataaataaaatgagcacacactacagcagacaaaatcaaa-tatagtgttt s panTro2.chr12 190263 162 - 135371336 aaaataaagaaGCCACCTCAACTGGGGGAGGGACTGCAGTTGCAATTGCAGTGAATGCC----ACAAAATGTGAAGT-GAAAGAAG----ACAGAAGTGAGCATACACTACAACAGACAAAATAAATAAAATGAGCACACACTACagcagacaaaatcaaa-tatagtgttt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 226768 162 - 136387465 aaaataaagaaGCCACCTCAATTGGGGGAAGGACTGCAGTTGCAATTGCAGtgaatgcc----acaaaatgtgaagt-gaaagaag----acagaaatgagcatacactacagcagacaaaacaaataaaatgagcatacactacagcagacaaaatcaaa-tatagtgttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 199455 128 - 134511895 aaaataaagaaGCCACCTCAATTGGAGGAAGGACTGCAGTTGCAATTGTAGtgaatgtc----acaaaatgtgaagt-gaaagaag----acagaagtgagcat----------------------------------atcctacagcagacaaaatcaaa-tatagtgttt i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29971678 125 - 76506943 AAAAAGAAGAAGCTGTCTACATTGAAGAGC---------TTGCAAATGCAatgaatctcagaaacaaatga--aagt-gaaagaagcaaaacacaaatgagcat----------------------------------gcacaacagcagacaaaaccaac-tgcagtgtta i bosTau4.chr17 I 11457 C 0 s equCab2.chr8 64146204 128 - 94057673 -acattaagaagctaCCTTAATTGGAGAGAAA------GGTgcaactgcaatgaatctcacaaacaaaacgtcaagt-gaaagaagcaaaccacaaatgagcat----------------------------------ctaccacagcagac-aaaccaag-tgccgagttt i equCab2.chr8 I 286 C 0 s micMur1.scaffold_9962 6598 122 - 51117 ---attaagaagctaCCTCAATTGGGGGAAGG------GATGCAATCGCAACAaatttcataaacaaaatgttaagtggaaagaag----atacaaatgaacata-------------------------------------tacaacagacaaaaccaaaccataatgttt i micMur1.scaffold_9962 I 544 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I e canFam2.chr26 3185643 4734 + 42029645 I a score=170004.000000 s hg19.chrUn_gl000223 63057 197 + 180455 aagaacgcacagataggagcagaactat-----a-----aagtcaggaaatggagaccaaaaa----aggatcctggttacctctgtcaggaggaagaggttgtgacgactgggagagg-gcac--atgaagggactcatctgggctaagaatattctatt----tcctgatct-gagtggtgatttcatgcatattccactgataacaattcatcaaa s micMur1.scaffold_9962 6720 203 - 51117 aaggatgcacagatagaagtaaaaccataaagaa-----aagcaaggaaataattatcagaaaacccaggatcctggttacctttgtc---aggaagagattgtg---attgggagaag-gcac--atgaaggg-cttgtttgggttgggaatgttgtactaagcgcttgactt-gagtggtggtttcatgcatattcacttgacaataattcattaaa i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 190425 197 - 135371336 aagaacgcacagataggagcagaactat-----a-----aagtcaggaaatggagacccaaaa----aggatcctggttacctctgtcaggaggaagaggttgtgacgactgggagagg-gcac--atgaagggactcatctgggctaagaatattctatt----tcctgatct-gagtggtgatttcatgcatattccactgataacaattcatcaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 226930 197 - 136387465 aaggacgcacagataggagcagaactat-----a-----aagtcaggaaatggtgaccagaaa----aggatcctggttacctgtgtcaggaggaacaggttgtgacgacagggagagg-gcac--atgaagggactcatctgggctaagaatattctatt----tcctaacct-gagtggtggtttcatgcatattccactggtaacaattcatcaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 199583 195 - 134511895 aagaatgcgcagagaggagcaaaactat-----a-----aagtcaggaaatgtttacc-aaaa----aggatcctggttacctctgtcaggaggaagaggctgtgataattgggagagg-gca---atgaagggactcatctgggctaagaatattctatt----tcttgacct-gagtggtggtttcatgcatattccactgacaataattcatcaaa i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29971803 172 - 76506943 gcggataaacacttaggagtaaaactaa-----acagacaagccaggaaatggttacagaagc---tagagtcctggttccctctgtc---aggaagaagctgtg---attgggattgaaactg------------tgatttcaat--------------t----tcttgaaatgaaatggtggtttcatgggtattcatttgataaca---cattaag i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64146332 173 - 94057673 aaggaatcagattcaggagcaaatgagg-----a-agacagacaagaaaacaggcac--cagc---cagggtcctggtcccgtgt---------------------------gcaggggagcac--aggaagagctgagtttcagc-cagaaggttctagt----tcctaacgt-aaagggaggtttcacgggtattcagttgatgataattcattaag i equCab2.chr8 C 0 C 0 s canFam2.chr26 3190377 195 + 42029645 AAAAAGAAACACTTAGCAgtaaaactag-----a-aactag-cacggaaatagtcacaacagt---catggtccaactccctggtcag---taggagatgctgtg---attggcaggggcacacgtgggaccaacctcatctgggctcagaatgttc---t----ccttgaccc-aaatggtggcttcatgggtatgcagttggtaatgattcattaag i canFam2.chr26 I 4734 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 219794 4047 + 667635 I a score=154991.000000 s hg19.chrUn_gl000223 63254 117 + 180455 ctgtattt---tt---taaaacatacttttctgcatgtaaattaggccttacagtttaaaaaggtaaa-aaGTAAATAA----TTATGGTCATGAAGTCCTGCTCTGGCATTCTACCCTTGGGACAT--A s rheMac2.chr11 199778 117 - 134511895 ctgtattt---tt---taaaacgtacttttcggcatgtaaattaggccttacagtttaaaaaggtaaa-aaGTAAATAA----TTATGGTCATGAAGTCCTGCTCTGGCATTCTATCCTTGGGACAT--A i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 227127 117 - 136387465 ctgtattt---tt---taaaacgtacttttctgcatgtaaattaggccttacagtttaaaaAGGTAAA-AAGTAAATAA----TTATGGTCATGAAGTCCTGCTCTGGCATTCTACCCTTGGGACAT--A i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 190622 117 - 135371336 ccgtattt---tt---taaaacgtacttttctgcatgtaaattaggccttacagtttaaaaAGGTAAA-AAGTAAATAA----TTATGGTCATGAAGTCCTGCTCTGGCATTCTACCCTTGGGACAT--A i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 6923 87 - 51117 ctgtacttttatt---ttttatgtacttttctgcatgtaaatgaggcttcacaatttaaaaAGGTAGATAAGTAAATAA----CTACGGT----------------------------------CAT--A i micMur1.scaffold_9962 C 0 C 0 s cavPor3.scaffold_248 223841 89 + 667635 ctatactt---tt---taagaaaagcttggcaccat---aatgagacctta---tctcaaaaAATAAA---------------------------AGTTCTGCTCTGGCATTCTACCTTTGGGTCAC--A i cavPor3.scaffold_248 I 4047 I 26 s bosTau4.chr17 29971975 122 - 76506943 ctgcactt---taatattttatgaacttttctccatgtgaattctgcttcacaac-taaagaggtaaataaaTAAATAA----TTATGGTGATTAAGTTCGGCTTTGGCATACTACCCTTGGGTCACATT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64146505 123 - 94057673 ctgtactt---ttacattttctgtatttttctgcatgtgaattctgcttcacaat-taaagagataaataaataaataaataCTGATGGTCACTAAGTTCTGCTCTGGCATTCTCCCCTT-GGTCAC--A i equCab2.chr8 C 0 C 0 s canFam2.chr26 3190572 117 + 42029645 ctgcactt---ttacattttatgtacttttccatatgtgaattctgctgcatgat-taaagagGTGAATACATAAA-------TTGTGATTACTAAGCTGTGCTTTGGCATTTTCACCTTCGGTCAC--T i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=77095.000000 s hg19.chrUn_gl000223 63371 73 + 180455 CTCTGAAGAACGCTATGAAAAAT-GCCGTAAGGTTCATGCGTTTATTAG--CG---TTTCTCTAGAGAACA-TTACCCAC s rheMac2.chr11 199895 74 - 134511895 CTCTGAAGAATGCTATGAAAAAT-GCCGTAAGGTTCATGCATTTATTAG--TG---TTTCTCTTGAGAACATTTACCCAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 227244 73 - 136387465 CTCTGAAGAATGCTATGAAAAAT-GCCGTAAGGTTCATGCGTTTATTAG--CA---TTTCTCTTGAGAACA-TTACCTAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 190739 73 - 135371336 CTCTGAAGAACGCTATGAAAAAT-GCCGTAAGGTTCATGCGTTTATTAG--CG---TTTCTCTAGAGAACA-TTACCCAC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 7010 76 - 51117 TTCTGAAGAATACTATGAAAAATAGCCATTAGACCCAAGCACTTATTATGCTG---TTTCTCTTGAGAACC-TTACCTAC i micMur1.scaffold_9962 C 0 C 0 s bosTau4.chr17 29972097 71 - 76506943 CTGTGGAAAACC--atgaaaaatggctacaatactcttgtatttatta---caatgtttctcctgaggaca-ttacc--- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64146628 54 - 94057673 CTGTGGAAAATG--GTGAAAAATGGCCATAAGACCCAGGTATTTATTA---CA---TTTCTC------------------ i equCab2.chr8 C 0 I 5 s canFam2.chr26 3190689 68 + 42029645 CTCTGGAAAAC----TGCAAAATGACCATAAGACCCACAGATTTACTA---CA---TTTCTC-TGAGGGCA-TTATCCAC i canFam2.chr26 C 0 I 4 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 223930 26 + 667635 I a score=430739.000000 s hg19.chrUn_gl000223 63444 665 + 180455 CAcagt---agcccccacc-tatccacaaaggagatgttccaagactccggtggatgcctgaaaccagatagaaccaaaccctataaagcctacgcttttttcctacacatacatacctatggtgaagttcagtttatgaattaggtacagtaaaaaata---aacaacaataataaaatagaacaattatgacaacatagtgtaatacaagttaccacacactgagactataacttctgcagtttgaggtgtgacagcagaattagcatgtatttatttttccttcttcacaatttcatgaatagatttgttcttactgtagatcttagcaacctcagcctgtatttt--------tcgttatgttgagaactttcacctgttcacttaaagcttctctttggtatatccgaattactagcatcactacttttatg-tctaggagccattattaagtaaaataagg---gctactaaaatacaagcactgcaataccatga--gctgatctgacacctcagatggctactaagtgactgacaggtaagcagcatatacagcatggatctgctggaccaagggatgaggcaggtcctgggtgggatggtgcaagagttcatcatgc---tactcagaacaggaa-gcaatttaaaacttaccaattgcttatttctgaaattttctattt s rheMac2.chr11 199969 667 - 134511895 CAcagt---agcccccacc-tatccacaaaggagatgttccaagaccccggtggatgcctgaaaccagacagtaccaaaccctataaagactatgctcttttcctacacatacatacctatggtgaagttcagtttatgaattaggtacagtaaaaaataaataacaacaataataaaatagaacaattataacaacatagtgtaataaaagttaccacacactgagactataacttctgcagtgtgaggtgtgacagcagaattagcatgtatttatttttccttcttcataatttcatgaataaatttgttcttaccatagaccttagcaacctcagcctacctttt--------tcgttatgtttagaattttcaccttttcacttagagcttctctttgatatatccgaattactagcatcactacttttatg-tatggaagccatt-ttaagtaaaatatgg---gctacaaaaatacaagcaccgtattaccatga--gctgatctgacagctcagatggctcccaagtgactgacaggtaagcaacatatacagcatgcatctgctggaccaagggatgaggcaggtcctgggtggaacggtgcaagagttcatcatgc---ttctcagaacaggta-gcaattcaaaacttacaaattgcttatttctgaaattttctattt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 227317 668 - 136387465 CAcagt---agtccccacc-tatccacaaagaagatgttccaagactccggtggacgcctgaaaccagacagaaccaaaccctataaagcctacgcttttttcctacacatacatacctatggtgaagttcagtttatgaattaggtacagtaaaaaatgaacaacaacaacaataaaatagaacaattatgacaacatagtgtaataaaagttaccacacactgagactataacttctgcagtttgaggtgtgacagcagaattagcatgtatttatttttccttcttcacaatttcatgaacagatttgttcttactgtagatcttagcaacctcagcctatatttt--------tcgttatgttgagaactttcaccttttcacttaaagcttctctttggtatatccgaattactagcatcactacttttatg-tctgggagccattattaagtaaaataagg---attactaaaatacaagcactgcaataccatga--gctgatctgacagctcagatggctactaagtgactgacaggtaagcagcatatacagcatggatctgctggaccaagggatgaggcaggtcctgggtgggatggtgcaagagttcatcatgc---tactcagaacaggaa-gtaattgaaaacttaccaattgcttatttctgaaattttctattt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 190812 664 - 135371336 CAcagt---agcccccacc-tatccacaaaggagatgttccaagactccggtggatgcctgaaaccagatagaaccaaaccctataaagcctacgcttttttcctacacatacatacctatggtgaagttcagtttatgaattaggtacagtaaaaaata---aacaacaataataaaatagaacaattatgacaacatagtgtaataaaagttaccacacactgagactataacttctgcagtttgaggtgtgacagcagaattagcatgtatttatttttccttcttca-aatttcatgaatagatttgttcttactgtagattttagcaacctcagcctgtatttt--------ttgtaatgttgagaactttcaccttttcacttaaagcttctctttggtatatccgaattactagcatcactacttttatg-tctaggagccattattaagtaaaataagg---gccactaaaatacaagcactgcaataccatga--gctgatctgacacctcagatggctactaagtgactgacaggtaagcagcatatacagcatggatctgctggaccaagggatgaggcaggtcctgggtgggatggtgcaagagttcatcatgc---tactcagaacaggaa-gcaatttaaaacttaccaattgcttatttctgaaattttctactt i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 7086 636 - 51117 TGCAGCATAagtccctaccttatccacccag--gatgttccaagtctccagtagatgcttgaaactggacagtaccaatccctacatatactatg-ttttttcctacacatagataccaatgataaagtctagtatataaa-taagcacaatgagagatt------aacaatactaaaataggaca------acaatgtgccgtaagaaaa--tatcacatactgttatggtaacttttgcagattgaggtacaatagcagagctaacaagtatttccttttccttcttcacaatttcacaga-agattcgttctt---gtagatatcagcaatgtcagcatatgatttttctcctgtccttatgttgagaacgtacaggaagcactttatggcttctctttagcctatctgaattggtagactgagtaccctagtgctttgggggccattattaagtaaaataaggtttattacttaatcacaagcactgctatatcacaacggtcaatctaataactcagatggctactgggtaactaccgggcaggtagcatatacagggtgggt-------acccagtggggaga--------gtgtgcaattg----agacttcaccctactcatactcatattaaatgcataatttaaatcttatgaattgcttatttctg------------- i micMur1.scaffold_9962 C 0 I 315 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 223930 26 + 667635 I e bosTau4.chr17 29972168 0 - 76506943 C e equCab2.chr8 64146682 5 - 94057673 I e canFam2.chr26 3190757 4 + 42029645 I a score=45822.000000 s hg19.chrUn_gl000223 64109 68 + 180455 aatattttcaaaccatgg--gaaattggaaaattgaaactgcaaaaagcaaaactgcagataaggaggaa s rheMac2.chr11 200636 68 - 134511895 aatattttcaaaccatgg--gaaattaggaaattaaaactgcaaaaatcaaaactgcagataaggaggaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 227985 68 - 136387465 aatattttcaaaccatgg--gaaattggaaaattgaaactgcaaaaggcaaaactgcagataaggaggaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 191476 68 - 135371336 aatattttcaaaccatgg--gaaattggaaaattgaaactgcaaaaagcaaaactgcagataaggaggaa i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 8037 68 - 51117 attatttttgaactgtggctgacctcaggtaactgaaactacagaaagcaaaactttggat--ggggaaa i micMur1.scaffold_9962 I 315 C 0 e dasNov2.scaffold_7587 26344 32771 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e oryCun2.chrUn0106 670547 8015 + 1032594 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 223930 26 + 667635 I e bosTau4.chr17 29972168 0 - 76506943 C e equCab2.chr8 64146682 5 - 94057673 I e canFam2.chr26 3190757 4 + 42029645 I a score=119368.000000 s hg19.chrUn_gl000223 64177 75 + 180455 ctactgC-ATATCTCTCATT--CATAAGACTTCA-TCAAGGAAAAAGAAATGGACACCCGATAAccaagaaatatttac s canFam2.chr26 3190761 48 + 42029645 ---------TATTATTTATT--CA-AAGACTTCA-TCAAAGA------------------ATGACCAAGAAATGTTTCC i canFam2.chr26 I 4 C 0 s oryCun2.chrUn0106 678562 62 + 1032594 ----------atcatttattcaca-aagacttca-tcgagggaataa-----agtaactaatgaccaagtaacattcac i oryCun2.chrUn0106 I 8015 C 0 s cavPor3.scaffold_248 223956 68 + 667635 --------ATATCACTCATT--GG-AAGATTTCATTCGAGGAGAAAAAAATGAATACTTAATGCTCAAGATTTATTTAT i cavPor3.scaffold_248 I 26 C 0 s bosTau4.chr17 29972168 52 - 76506943 -----actatatcatttatt--ta-aaggcttcc-ccaggga------------------gtgaccaataaatacttac i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64146687 54 - 94057673 CTACT---ATATCATTTATT--CA-AAGACTTCA-TCATGGA------------------ATGAccaagaaatattaac i equCab2.chr8 I 5 C 0 s rheMac2.chr11 200704 75 - 134511895 ctactgC-ATATCTCTTATT--CATAAGACTTCA-TCAAGGAAAAATAAACGAACACCTGATAACCAAGAAATATTTAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 228053 75 - 136387465 ctactgC-ATATCTCTCATT--CATAAGACTTCA-TCAAGGAAAAAGAAATGGACACCTGATAAccaagaaatatttac i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 191544 75 - 135371336 ctactgC-ATATCTCTCATT--CATAAGACTTCA-TCAAGGAAAAAGAAATGGACACCCGATAAccaagaaatatttac i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 8105 71 - 51117 ttattgC-ATATCACTTACT--TA-AAGGCTTCA-TCAAAGGAAAA-AAATGTATG--TAATtaccaataaatgtttac i micMur1.scaffold_9962 C 0 C 0 s dasNov2.scaffold_7587 59115 64 + 154172 --------ctatcatttatc--ca-aagacttca-tcaaggaaaaa-aaattgatacctaataaccaagtagtattt-- i dasNov2.scaffold_7587 I 32771 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e loxAfr3.scaffold_113 106370 2732 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=285602.000000 s hg19.chrUn_gl000223 64252 126 + 180455 ttcctatgggcaatcagtttgcttttacctttaaacgatgc-aaagcatataaaagctcacatttctctattacgactaccaaaaatttgaaaacaaagt-ttgcagctca-----aatgcagtaattatgta s micMur1.scaffold_9962 8176 126 - 51117 ttcctataagaaattgatttgctttttcctttgaactatgc-aactcatataaatgttcacatttctttactaaaactgccaacaatttgagaaccaagt-ttgcagctca-----aatgcaataattatgca i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 191619 126 - 135371336 ttcctatgggcaatcagtttgcttttacctttaaatgatgc-aaagcatataaaagctcgcatttctctattacgactaccaaaaatttgaaaacaaagt-ttgcagctca-----aatgcagtaattatgta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228128 124 - 136387465 tttctatgggcaatcagtttgcttttaccttttaactatgc--aagcatataaaagctcacatttctctattacgactcccaaaaatttg-aaacaaagt-ttgcagttca-----aatgcagtaattatgta i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 200779 115 - 134511895 TTCCTATGGGCAA-----------TTAcctttaaaccatgc-aaagcatataaaagctcacatttctctattacgactgccaaaaatttgaaaacaaagt-ttgcagctca-----aatgcagtaattatgta i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64146741 119 - 94057673 tttctacgaagaatcagtttgctttttcatttggataacgc-aactcatataaatgttcgc----gtttattacaactgccaaaaatttgagaacc-agt-ttgcagctca-----aattcagtaattatg-- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29972220 103 - 76506943 tttccat---gaagaattttgctttttcatttagatagtac-aatgcatat--------------gtttattacacttgtcaagaatttgaga----agt-ttatagctc-------attcaataattatgta i bosTau4.chr17 C 0 C 0 s cavPor3.scaffold_248 224024 108 + 667635 TTACTATGGGCAATCAGTTTGCTTCTTTCTTCAAACTGTGC-AACTCAAA--------CATATTTC---------------AAAAATGTGAGAACCAAGT-TTGCAGCTCAAATGCAATGCAATAATCACACA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 678624 124 + 1032594 ttcctacgaagaattagtttgctttttcctttgaattatgc-aacttatataaacatccatatttccttattacaac--cgcaaaacatctcagccaagt-tcccagtttg-----aattcaataattatgca i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3190809 112 + 42029645 TTTCTAT---GAACTAATTTACTTTTTCCTTTGGAAAACGC-AAGTCAAAGAAACATT-------ACTTATTACAACTGCTAAAAATCTGAAAACC-AGGATTGCAGCTCA-----AAT----TAATTATGTA i canFam2.chr26 C 0 I 192 s loxAfr3.scaffold_113 109102 124 - 3408981 tttgtatgaggaattagtctgctttttcctttggacaatac-aattcata--aatgctcataattctttattatagctgccaaaaatttcagatccaagt-ttgcaggtca-----gatttaataattttgta i loxAfr3.scaffold_113 I 2732 C 0 s dasNov2.scaffold_7587 59179 107 + 154172 --------------cagtctgctttttcctttgtataatgcaaactcatgt-agtgttcac-attctttattataactgccaaaaatttcagagccaagt-ttgcagctta-----aattgaata----tcca i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=37371.000000 s hg19.chrUn_gl000223 64378 36 + 180455 agatgttatggcttTAAATATGCTATA---AATACTCAA- s rheMac2.chr11 200894 36 - 134511895 agatgttatggcttTAAATATGCTGTA---AATACTCAA- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 228252 36 - 136387465 agatgttatggcttTAAATATGCTATA---AATACTCCA- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 191745 36 - 135371336 agatgttatggcttTAAATATGCTATA---AATACTCAA- i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 8302 22 - 51117 ggacaccatggctt-----------------atagtcaa- i micMur1.scaffold_9962 C 0 C 0 s cavPor3.scaffold_248 224132 29 + 667635 GGATACTATGATTT----------TCATGTAGTATTTAA- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 678748 26 + 1032594 ggatattGCAGATA----------ATA---AACATTCAA- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29972323 26 - 76506943 ggacactaaggctt----------ata---aaaatcgaa- i bosTau4.chr17 C 0 I 1 s equCab2.chr8 64146860 25 - 94057673 -gacactatggctt----------aca---AAAATTCAA- i equCab2.chr8 C 0 I 1 s canFam2.chr26 3191113 25 + 42029645 AGACACTGTAGCTT----------ATA---AAAATTCA-- i canFam2.chr26 I 192 I 412 s loxAfr3.scaffold_113 109226 25 - 3408981 ggatattatgac------------ata---aaaatttCAA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59286 27 + 154172 ggatgctatggctt----------ata---AGAATTCCAA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=96905.000000 s hg19.chrUn_gl000223 64414 35 + 180455 TCCT-AAGAACCTGTCATGGTCCAGTAGTTAATATA s rheMac2.chr11 200930 29 - 134511895 CCCT-AAGAATCT------GTCCAATAGTTAATGTA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 228288 35 - 136387465 ACCT-AAGAACCTGTCATGGTCCCGTAGTTAATATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 191781 35 - 135371336 TCCT-AAGAACCTGTCATGGTCCAGTAGTTAATATA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 224161 36 + 667635 ACTTTAAGAACTTTCTGAGGTCCTATAATTACTGTA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 678774 36 + 1032594 ACTTTAAGAACGTCTCAAGGCCACAGAATTAATGCC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29972350 35 - 76506943 cttt-aagaacttctcaaggccctatagttattgca i bosTau4.chr17 I 1 C 0 s equCab2.chr8 64146886 34 - 94057673 CCTT-AAGAACTT-TCAAGGCCCTATAGTTAATATA i equCab2.chr8 I 1 C 0 s canFam2.chr26 3191550 35 + 42029645 TCCT-AAGACCTTCTCAAGACCCTATAGTTAATAAa i canFam2.chr26 I 412 I 284 s micMur1.scaffold_9962 8324 27 - 51117 ---------acttttcaaggcctgatagttaataaa i micMur1.scaffold_9962 C 0 C 0 s tarSyr1.scaffold_432063 320 31 + 1261 -----aaGAGATTCTCACAGCCCTATAGTTAGTATA i tarSyr1.scaffold_432063 N 0 C 0 s loxAfr3.scaffold_113 109251 35 - 3408981 CCTT-AGGAACTTGACAAGATTCTATAGTTGATATA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59313 36 + 154172 CCTTAAGAAACTTCACAAGGCCCCATAGTTAATATA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=174045.000000 s hg19.chrUn_gl000223 64449 45 + 180455 TCACTGTGCCAATTT-TGTTCCAATCCTGATCA-----TCTGAGGCTATTT s micMur1.scaffold_9962 8351 50 - 51117 tcactgctccaattt-tgccccaaacctgatcttctattctgaggctattt i micMur1.scaffold_9962 C 0 C 0 s tarSyr1.scaffold_432063 351 50 + 1261 TCAAGGCTCCAATTT-TGCCCCAATACTGATCTTCTATTCTGAAACTATTT i tarSyr1.scaffold_432063 C 0 I 311 s rheMac2.chr11 200959 50 - 134511895 TCACTGTGCCAATTT-TGTTCCAATCCTGATCATCTATTCTGAGGCTATTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 228323 45 - 136387465 TCACTGTGCCAATTT-TGTTCCAATCCTAATCA-----TCTGAGGCTATTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 191816 45 - 135371336 TCACTGTGCCAATTT-TGTTCCAATCCTGATCA-----TCTGAGGCTATTT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 224197 50 + 667635 TCATTGTTCCAAATT-CACCCCAATCCTGATAATCTGGTCTGACATTATTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 678810 50 + 1032594 TCAGTGCTCCAATTC-TGCCCCCATCTTGACCTTCTGTGCTGACGCTATTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29972385 49 - 76506943 tcactgctttatttt--gtcccagtttggatcttccattctgagggtatct i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3191869 51 + 42029645 TAACTGCTCCAGTTTGGGTAACAATCTGGATCTTCTATTCTGAGGCTATTT i canFam2.chr26 I 284 C 0 s equCab2.chr8 64146920 50 - 94057673 TCACTGCTCCAATTT-TATCCCAATCTGGATCTTCCATTCTGAGGCTATTT i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 109286 50 - 3408981 TCACTGCTCCAACTC-TGTTCCAATCCTGATATTCTATTCTTAGAATATTT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59349 48 + 154172 TCATATTATCA--TT-TACCCCAATCTCAATTTTCTATTCAAAGGATATTT i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 20405 2323 - 57811 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=64908.000000 s hg19.chrUn_gl000223 64494 32 + 180455 TCCTCTGATTTCTTAAC--TATTTAAAC--TTTTCT s panTro2.chr12 191861 32 - 135371336 TCCTCTGATTTCTTAAC--TATTCAAAC--TTTTCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228368 33 - 136387465 TCCTCTGATTTCTTAAC--TATTTAAACT-TTTTCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201009 32 - 134511895 TCCTCTGATTTCTTAAC--TATTTAAAC--TTTTCT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 712 32 + 1261 TCCCCTGATTTCTTAAC--CATTTATAC--TTTTCT i tarSyr1.scaffold_432063 I 311 C 0 s micMur1.scaffold_9962 8401 32 - 51117 tctccagacttcttaac--tatatatag--ttttct i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_103331.1-57811 22728 34 - 57811 TCCCCAGAATGCTTAACTATATTTTAAC--TAAACT i tupBel1.scaffold_103331.1-57811 I 2323 C 0 s cavPor3.scaffold_248 224247 32 + 667635 TCC--CAATTTCTTAAC--TTCTCATATACTTTTCT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 678860 31 + 1032594 TCCTTCACTGTCTTAGC--TATTTACATG---TTCT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29972434 32 - 76506943 tcccctgacttcttaaC--AATGTAATA--TTTCGT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3191920 29 + 42029645 TCCCCTGATTTCTTAAG-----TTATAC--TTTTAT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64146970 29 - 94057673 TCCCCTGATTTCTTAAC-----TTTTCT--TACTTT i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 109336 16 - 3408981 TTCTCTAAT------------------C--TTGATT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59397 28 + 154172 TCCCCTAATTTCT------TATTTATAC--TTTTCT i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e otoGar1.scaffold_101698.1-26550 10854 4492 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=91981.000000 s hg19.chrUn_gl000223 64526 24 + 180455 TTTTCACCGGAAGGC-TTATACATT s panTro2.chr12 191893 24 - 135371336 TTTTCACTGGAAGGC-TTATACATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228401 24 - 136387465 TTTTCACCAGAAGGC-TTATACATC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201041 24 - 134511895 TTTTCACTGGAAGGC-TTACACATC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 744 22 + 1261 TTTTCAATAGAAGAC---ATACATT i tarSyr1.scaffold_432063 C 0 C 0 s micMur1.scaffold_9962 8433 24 - 51117 ttttcactggaagac-ttatacatc i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 15346 22 + 26550 TTTTCATTGGAAGAC---ATATATC i otoGar1.scaffold_101698.1-26550 I 4492 C 0 s tupBel1.scaffold_103331.1-57811 22762 22 - 57811 TTTTTACTAAAAGAT---ATATATC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 224279 24 + 667635 TTTTTACTGGAACAT-TTATTTATC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 678891 24 + 1032594 TTTCCACTGGAAGAT-GTATACATC i oryCun2.chrUn0106 C 0 I 338 s bosTau4.chr17 29972466 18 - 76506943 TTTTCACTC-------TTACATACT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3191949 24 + 42029645 TTTTCATTAGAAGAT-ATACATACC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64146999 22 - 94057673 GTTTCACTGGAAG---ACACAGACC i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 109352 24 - 3408981 TTTAAACTATAAGAC-TTACATGTT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59425 25 + 154172 TTTTTACTGTAAAACTTTATATATT i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=254776.000000 s hg19.chrUn_gl000223 64550 53 + 180455 TCTTCTAATTCCCTGG-G-------A-AAAAATAAGAACTCAACAATCAACTCACCT------------------GTAAC s panTro2.chr12 191917 53 - 135371336 TCTTCTAATTCCCTGG-G-------A-AAAAATAAGAACTCAACAATCAACTCACCT------------------GTAAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228425 53 - 136387465 TCTTCTAATTCCCTGG-G-------A-AAAAATAAGAACTTGACAATCAACTCACCT------------------GTAAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201065 53 - 134511895 TCTTTTAATTCCCTGG-G-------A-AAAAATAAGAACTAAACAATCAACTCACCT------------------GTAAC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 766 52 + 1261 TCTTCGAATGCCCTGG-G---------GAAAATGAGAAATAAACAATCAACTCACCT------------------GTAAC i tarSyr1.scaffold_432063 C 0 C 0 s micMur1.scaffold_9962 8457 60 - 51117 tcttctaaccccttgg-gtaaaaaaa-aaaaaatagaaataaacaaTCTACTCACCT------------------GCAGC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 15368 53 + 26550 TATTCTAATCCCCTAG-G-------A-AAAAATGAGAAATTAACAATCAACTCACCT------------------GTAAC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 22784 53 - 57811 TCTTCTAGTCGTTCAG-A-------A-AATAGCAAGGAATAAACAATGAACTCACCT------------------GGAAC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 224303 52 + 667635 TCTACTAATCCCCTGT-A-------T-AATGATGAGGAA-GAACAACCAACTTACTT------------------GTAAT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 679253 46 + 1032594 TCTTCCAATCTTC----------------TAACAAGGAATAAACAAGCAACTCACCT------------------GTGGA i oryCun2.chrUn0106 I 338 C 0 s bosTau4.chr17 29972484 53 - 76506943 CCTTCTAATCCCCTGGAA-------A-AATAATGAGGAATAAAC-ACAAACTCACCT------------------GTAAC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3191973 53 + 42029645 TCTTCTAATCCCCTGG-A-------A-AATAATGGAGAAGAAACAATCACCTCACCT------------------GTAAC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64147021 54 - 94057673 ACCTTCAATCCCCAGGAA-------A-AATAATGAGGAACAAACAATCGACTCACCT------------------GCAAC i equCab2.chr8 C 0 C 0 s turTru1.scaffold_102261 4428 48 + 30858 ----CTAATTCCCTGG-A-------A-AATAATGAGAAATAAAC-ATGAACTCACCT------------------GTAAC i turTru1.scaffold_102261 N 0 C 0 s loxAfr3.scaffold_113 109376 67 - 3408981 TTCTCTACTACATTGA-A-------A----AATAAGGAACAAA-AATCAACTCACCTGTAACATGGGTTTTTTGGGTAAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59450 54 + 154172 TTTTCCAATACCCAGA-A-------AAAATAATGAGGAATAAACAATCAACTCACTT------------------GTAAT i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=412697.000000 s hg19.chrUn_gl000223 64603 92 + 180455 ATG-GTCATTTTCTGCTG-CTGTACGAGATG-ATCAGCAAGGCTGAGATCGGTTCTACTGTGC-GTCTCTTCTGCTTCTGCCCCAAAACTGTGGAG s panTro2.chr12 191970 92 - 135371336 ATG-GTCATTTTCTGCTG-CTGTACGAGATG-ATCAGCAAGGCTGAGATCGGTTCTACTGTGC-GTCTCTTCTACTTCTGCCCCAAAACTGTGGAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228478 92 - 136387465 ATG-GTCATTTTCTGCTG-CTGTACGAGATG-ATCAGCAAGGCTGAGATCGGTTCTACTGTGC-GTCTCTTCTGCTTCTGCCCCAAAACTGTGGAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201118 92 - 134511895 ATG-GTCATTTTCTGCTG-CTGTACGAGATG-ATCAGCAAGGCTGAGACGGGTTCTACTGTGC-GTCTCTTCTGCTTCTGCCCCAAAACTGTGGAG i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 818 93 + 1261 GTG-GTCATTTTCTGTTGCCTGTGCAAAATG-ATTAGCAAGTCTGAGATCTGTTCTATTGTGT-GACTCTTCTGATTCTGTAACAGAGCTCCGGAG i tarSyr1.scaffold_432063 C 0 C 0 s micMur1.scaffold_9962 8517 93 - 51117 ATG-TTCATTGTCTGTTGTCTGTGTGAGATG-ATTAACAAAGCTGTGATCTGTTCTATTCTGT-GTCCCTTTTGCCTCTGTTTCAAAGCTCTGGAG i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 15421 94 + 26550 ATG-GTCATTGTCTGTTGTCTGTGTGAGCTGAATTAGCAAGGCTGAGATATGTTCTATTCTGT-GTCTTTTCTGCCTCTGCTCCAAAGCCCTGGAG i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 22837 91 - 57811 GTG-GCCATTTCCTGCTGCATGTGCACGAGG-ACTA-CAAGGTTGAGGTCTGTTCTATTAAGT-GCCTCTCCTGCCTCCGT-CCAAAGCTCTGAAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 224355 92 + 667635 GTG-GTCATTTC-TGTTGCCTGCACAAGATG-ATTAGCAAATATGAGATGTGCTGTATTCTGG-GTCTCTTCTGCTTCTTCCCCTAAGATGTGAGG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 679299 77 + 1032594 GTG-GTCATTTTATGTTGCCGATGTGAGATG-ATTCTC--------------TTCTCTTCT---GTCTCTTCTGCCTCTGCTCCAAAGCTCTGGAG i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 4476 85 + 30858 ATGTGTCAT-TTCTGC------TGCAAGATG-AGTAGCAAGTCTGAGATTTGTTCTGTCCTGCAGCCTCT---GCTTCTGCCCTGAAGCTCTGGTG i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29972537 90 - 76506943 ATG-GTCAT-TTCTGCAGCCTGTGTGAGATG-GTCAGCAAGTCTGAGTTTTGTTCAGTCCTGTGGCCTCT---GCTTCTACCCTGAAGCTCTGGAG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147075 74 - 94057673 ATG-GTCACGTTCTGCTGCCTACATGAGACG-ACTCGCAAGTCCGAGACGGGTCCTCTCCTGA--------------------TGTACTTCTGGTC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3192026 67 + 42029645 ATG-GTCATTTTCTGTTGCCTGTGCAAGATG-AGTAGCACATCTGAGATCTGCCCCACCCTGA-GCCTCT-------------------------- i canFam2.chr26 C 0 I 12 s pteVam1.scaffold_19059 617 93 - 15447 ATG-GTCATTTTCTGGGGCAAATCTAAGATG-ATTAGCAAGTCTAAGATTTGTTCTATTCTGT-GTCTCTTTTGCATCAGCGCTAAAGCTCTGGGA i pteVam1.scaffold_19059 N 0 C 0 s loxAfr3.scaffold_113 109443 80 - 3408981 ATG-GTCATTTTCTGTTGCCCACATGAGATC-ATTGGTCAGTC---AGGCTGCTCTCTCCTGC-GTCTCTTCTGCCTCTACCTCAG---------- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59504 93 + 154172 GTG-TTCATTTTTAGTTGTCCCTGGGAAATG-ATTAGCACGTCTGAAATCTGTTCTATACTAT-GTCTCTTCTCACTCAGCCTCCAAGTTTTGGGG i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=828503.000000 s hg19.chrUn_gl000223 64695 127 + 180455 TGAGGTCTCAGCTAGGTCTTCTACACTGAGAATGAATTCCTGGTTCCAGGAACTCCTTTCTTATCTCA--CATGAGCAGGCTTATTTGT-A-GGGACCAGGATCTGTGGACTTCGGGAGAAATGTACTTCA s panTro2.chr12 192062 127 - 135371336 TGAGGTCTCAGCTAGGTCTTCTACACTGAGAATGAATTCCTGGTTCCAGGAACTCCTTTCTTATCTCA--CATGAGCAGGCTTATTTGT-A-GGGACCAGGATCTGTGGACTTCGGGAGAAATGTACTTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228570 127 - 136387465 TGAGGTCTCAGCTAGGTCTTCTACACTGAGAATGAATTCCTGGTTCCAGGAACTCCTTTCTTATCTCA--CATGAGCAGGCTTATTTGT-A-GGGACCAGGATCTGTGGACTTCGGGAGAAATGTACTTCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201210 127 - 134511895 AGAGGGCTTGGCTAGGTCTTCTACACTGAGAATGAATTCCTGGTTCCAGCAACTCCTTTTTTATCTCA--CATGAGCACGCTTATTTGT-A-GGGACCAGGATCTGTGGACTTTGGGAGAAATGTACTTCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 911 117 + 1261 TG-----------AGGTCTTCTACACTGAGAACGAATTCCTGGTTCCGAGAACTCTTTTCTTATCTCG--TGTGAGCAGGCTTATTTATGA-GGAACCACGATCTGTGGACTTAGGGACAAATACACTTCA i tarSyr1.scaffold_432063 C 0 C 0 s micMur1.scaffold_9962 8610 128 - 51117 TGAGGTCGTGGCAAGGTCTTCTACACTGAGAATGAATTCTTGATTCCAGAAATTCCCTTCTTATCTCA--CATGAGCAGGCTTACTTGTGA-GGAACCAGGATCTGTAGACTTAGAGACAAATGCACCTCA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 15515 123 + 26550 TGAGGTCCTGGCAAGGTCTTCTACA-TGAAAATGAGCTCTTGATTCAGGAA----CCCCTTTGTCTCA--TGTGAGCAGGCTTATTAGTGG-GGAACCAGGATCTGTAGACTTAGGGACAAATGCACTTCA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 22928 107 - 57811 TG-----------TGGTCTTCTCCA---AAGAAAAATTCCTGGTTCCAGGCACTCCCCTTATCTCCCACCCATGAACAGGCTTACTTATGG-GAAGCCAGGATCTGTGAACTTAGGGATAAA--------- i tupBel1.scaffold_103331.1-57811 C 0 I 202 s cavPor3.scaffold_248 224447 125 + 667635 TGAGGTCTTAGCTAGGTCTTCTCCACTGTGGATGAATTTTTGGTCCCAGGAACCCCGTTCTCATCTCA--CGTAAGCAGGCTTACTTGT-A-AGAACCCAGATCTGTGGGCAT-AGGACAAATAC-CTTCA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 679376 128 + 1032594 TGAGGTCTTGGCTAGGTCATCTGCATTAAGAACAAATTTCTGGTTGCACGAACTCCTTTCTTATCTCA--GAGGAGCAGGCTTATCTGA-AGGGAATCAGGATCTGTGGACACAAGGACAAAAGCACTTCA i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 4561 117 + 30858 TGAGG-----------TCTTTTACACTAGGAATGACTTTCTGCTTCTGGGAATGCGTTTCTTATCTCA--CACGAGCAGCCTTATTTGTGT-GGAACCAGGATCTGTGGACTTGGGGACAAACGAACTTCA i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29972627 116 - 76506943 TGAGG-----------TCTTTAACACCAGGAATGAATTTCT-CTGCTGGGAATGCCTTTCTTGTCTCA--CACGAGCAGGCTTATTTGTGG-GGAACCAGGATCTGTGAACCTGGGGACCAATGCACTTCA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147149 128 - 94057673 TGAGGTCCTGGCTGGGTCTCTCACACTGAGAACGAAGTCCTGGTTCCAGGAGCTCCTTTCTTATCTCA--CATGAGCAGGCTTATTTGCAG-GGAACCAGGATCTGTGGACTCAGGGACAAATGCACTTTA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3192105 126 + 42029645 TGAGGCCGTGGCCAGGTCTTTCACACCATGAACAGGTTCCTGGCTCCAAGAGTGCCTTTACTGTGTCA--CATGAGCAGGCTCGCTTG--A-GTATCCAGGATCTGTGGACTTAGGAACAAAGGTACTTTA i canFam2.chr26 I 12 I 214 s pteVam1.scaffold_19059 710 126 - 15447 TGAAGTCTTGCCTAAATCTTATACTCTTAGAATGAATTCCTGATTCCAGGGCCTCCTTTCTTATCTCA--CATGAGCAGGATTATTTTTGG-AGAACCAGAACCTGTAGGCTTGGAAAT--TTCTGCCTCA i pteVam1.scaffold_19059 C 0 N 0 s loxAfr3.scaffold_113 109523 120 - 3408981 --------TGGCTAAGTCTTCTACACTGAGAATAAACTCCTAGTTCCAGGACTTCCTTTCTTATCTCA--CACAAGCAGGCTTATTTCTGG-GGAATCAGGATCTGTGGACTTGAGGACAAACACATTTTA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59597 128 + 154172 TGAGGTCCTGACTAGATCTTCTACACTGAGAATAAATTCCCAGTTCCAGAACCTTCTTTTTAAGATCA--CATGAGCAGGCTTATTTCTAG-GGAACCAGGACCTGTGGATTTAGAAACAAACTTACATTA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=495437.000000 s hg19.chrUn_gl000223 64822 88 + 180455 ACTG--GTATATTCACATTGCACATGAAATCTCTTTCTCTCTTGCTAGGAA-CTTGGAATTCACGATCATCTAAGGCCAGAGGTACG-CTTG s panTro2.chr12 192189 86 - 135371336 ACTG--GTATATTCACATTGCACATGAAATCT--TTCTCTCTTGCTAGGAA-CTTGGAATTCACGATCATCTAAGGCCAGAGGTACG-CTTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228697 86 - 136387465 ACTG--GTATATTCACACTGCACATGAAATCT--CTCTCTCTTGCTAGGAA-CTTGGAATTCAAGATCATCTAAGGCCAGAGGTACG-CTTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201337 88 - 134511895 ACTG--GTATATTCACATTGCACATGAAATCTTTTTCTATCTTGCTAGGAA-CTTGGAATTAATGATCATCTAAGGCCAGAGGTATG-CTTG i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 1028 82 + 1261 ACTG--ATATATTCACATTGCACCTGAAATCT--TTTTCTCTTACTA-GAA-TTTGGAATTCATGATTATCTAACGCCAAAG---TG-TTTG i tarSyr1.scaffold_432063 C 0 C 0 s micMur1.scaffold_9962 8738 87 - 51117 ACTG--GTATATTCACATTGTTCCTGAAATCCTTTCCTCTCTTGCTAGGAA-CTTAGAATTCATGATTATCCAAGGCCAGAA-TATG-TTTG i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 15638 89 + 26550 ACTGATATATATTCACAGTATGCCTGAAATGTTTTCCTCTCTTTCTAGGAA-CTTGGAATTCATGATCATCTAATATCAGAG-TATG-TTTA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s tupBel1.scaffold_103331.1-57811 23237 87 - 57811 ACTG--GTATATTCACACTGCACCTGAAATCTTTTCCTTTCTTCTTAGGGC-CCACAAATTCATGATCATCTAAGGCCAGTG-TATA-TTTG i tupBel1.scaffold_103331.1-57811 I 202 C 0 s cavPor3.scaffold_248 224572 87 + 667635 ACTG--GTATGTTTGCATCACA-CTCAAATCTTTTCCTCCCTTGCCAGGGACCTTGGAATTTATGATCATCTAAAGCCAGGG-TGGA-CTTA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 679504 87 + 1032594 TCTC--GCATGTTCCCACTGCACCTTAAATCTCTTCCTCTGTTGCTAGGAA-ATAGGAATTCACGATCATCTAAGACCAGAG-AATG-TTTC i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 4678 87 + 30858 ACTG--GTATATTCACGCTGCACCAAAAATCCTTTCCTCTCTTACTAGGAA-CTAGGAATTCATGATCATCTAAGGCCAGAC-TGTG-TTTC i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29972743 87 - 76506943 ATTG--GTATATTCATAGTGCACCTAAAATCCCTTCCTTTCTTGCTGGGAA-ATAGGAATTGATAATCATCTAATGCCAGAG-TGTC-TTTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147277 87 - 94057673 ACTG--GAATACTCACACTGCACCTAAAACCTTTTCCTCTCTTGACAGGGA-CTAGGAATTCCTGATCATCTAAGGCCAGAG-TGTG-TTTT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3192445 69 + 42029645 AATT--GGATATTCACACCACACCTAAGACCTGGGAA-CTCTTGCTAGGAA-CGAGGAATTCACAATCATCTG------------------- i canFam2.chr26 I 214 I 401 s loxAfr3.scaffold_113 109643 88 - 3408981 GCTG--GTATATTCGCACTGTACCTAAAATCTTTTCCTTTCTTGATAGGAA-CTAGGGATTTATGATAATCTAAATCCAGAG-CGTGAATTT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59725 87 + 154172 GCTG--GTATAGTCACACTATACCTAAAATCTGTTTCTCTTTTGATAGGAA-CTAGGAATTCAGGATCATCTAAGGTCAGAG-TATG-TTTT i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=178227.000000 s hg19.chrUn_gl000223 64910 68 + 180455 CTATATAACTGAAACAGCACTC--TC-AGGGAA----ACAGAATATAGT-A-AAATGGAAC-------------------AGTGGAAGCCTAGGTC s panTro2.chr12 192275 68 - 135371336 CTATATAACTGAAACAGCGCTC--TC-AGGGAA----ACAGAATATAGT-A-AAAGGGAAC-------------------AGTGGAAGCCTAGGTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228783 68 - 136387465 CTATATAACTGAAACAGCGCTC--TC-AGGGAA----ACAGAATATAGT-A-AAATGGAAC-------------------AGTGGAAGCCCAGGTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201425 67 - 134511895 CTATATAACTGAAACAG-GTTC--TC-AGGGAA----ACAGAATATAGT-A-AAATGGAAC-------------------AGTGGAAGCCTAGGTC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 1110 69 + 1261 ATATATAATTGAAACAGCTCTCAAAC-AAAGAA----ACAGGATATAGT---AAACAGAAC-------------------ATTGAAAGTCTATGTC i tarSyr1.scaffold_432063 C 0 C 0 s micMur1.scaffold_9962 8825 72 - 51117 TTATATAATTGAAACAGGGCTC--TC-AGGGAAAGAAATAGGATATAGT-A-AAACAGAAC-------------------AGTAGAAGCCTATGTC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 15727 73 + 26550 TTATATAACTGAAATAGGGCTC--TT-AGAGAAAAAGATAGGATATAATAA-AAACAGAAC-------------------AGTAGAggctgggttc i otoGar1.scaffold_101698.1-26550 C 0 I 1577 s tupBel1.scaffold_103331.1-57811 23324 61 - 57811 CTATGTAACTAAAACAGGGCTC--TT-GGAGAC----AGA-AATACAAT-G-TGTTAGAAC-------------------AGT------CTTTATC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 224659 63 + 667635 CTATATAATTAAAACTGGCCTT--TC-AGGAACAGAAGCAAGACACAAT-A-AAATACAAC----------------------------CCAAATC i cavPor3.scaffold_248 C 0 I 6 s oryCun2.chrUn0106 679591 45 + 1032594 CTATGTAA---------GCTTC--TC-AGAGACAGAAACAGGGAACAGG-A-AAGTCCA------------------------------------- i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 4765 66 + 30858 CTATATAACTGAAACAGGACTA--CC-TGGGACAGAAACAGAATGTAAC-G-TAAAAGAAC-------------------AGCAAAA------GTC i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29972830 72 - 76506943 CTGTATAACTGACACAGGACTA--CC-AGGGATAGAAATAGAATGTGAT-A-CAAAAGAAT-------------------GGCAGAAGTGCATGTC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147364 68 - 94057673 CTAGATAACCGAAACAGGGCAA--GT--AGGGCAGCAACAGGCCACAGC-----ATAAAGG-------------------AGCAGAAGTCTGCATC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3192915 73 + 42029645 CTATATAACTGAACTAGGGCTA--TCCAGGGATAGGAACAGGATATAGT-G-CAAAAAAAG-------------------AACAGAAGTCTATGAT i canFam2.chr26 I 401 C 0 s loxAfr3.scaffold_113 109731 91 - 3408981 CTATATAACAGAAAAAGGGATA--TC-AGGGACAGGAATTAGATACAGT-A-TAAAAGAATCCAAAATTCTTAATTACAAAGTAGAAGCCTATGGC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59812 89 + 154172 CTATATAATTTAAACAGGGTTA--TC-AGGGACAGAAACACAATACAGT-GTTAAAAGAACCCAGCTTTCTTAATTACA---CTGAAGTCCATGGC i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=283887.000000 s hg19.chrUn_gl000223 64978 84 + 180455 TCT-GCAAACAGATA-AGGAAATATCAGAAATAAAGTAATTG-TGAGATTCACTCAATATTCACTGTGAATGCTGAAATGCAAATCA s panTro2.chr12 192343 84 - 135371336 TCT-GCAAACAGATA-AGGAAATATCAGAAATAAAGTAATTG-TGAGATTCACTCAATATTCACTGTGAATGCTGAAATGCAAATCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228851 84 - 136387465 TCT-GCAAATCGATA-AGGAAATATCAGAAACAAAGTAATTG-TGAGATTCACTCAATATTCACTGTGAACGCTGAAATGCAAATCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201492 84 - 134511895 TCT-GCAAACACATA-AGGAAATATCAGAAATAAAGTAACTG-TGAGATTCACTCAATATTCACTGTGAACGCCGAAATGCAAGTCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_432063 1179 82 + 1261 TCTGGCAAACTAATT-TTTTAAAATCAGAAATAAAT--ATTT-TGAGATTCAGTCCATATTTACTGCAGACACT-CAATGAAAATCA i tarSyr1.scaffold_432063 C 0 N 0 s micMur1.scaffold_9962 8897 82 - 51117 TCT-GTAAACAGATA-ATGAAATATGAGAAATAAAATAATTC-TAAGAGTTGTTCAATATTCACTGTGGA--CTGAAATGCAAATCA i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_103331.1-57811 23385 81 - 57811 TCT-GCCAGCAAATA-AAGAAAT---AGAAATAAAGTAATTC-TGAGATTAATTAAATATTCAGTCTAGATATTGAAATGCAAATCA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 224728 74 + 667635 TCT-GTAAACCGAGA-AACAATTACCA-----CAAATAATTC-TATGATTTATTCCATATTTACAGTGGGCTGTATTCTATA----- i cavPor3.scaffold_248 I 6 C 0 s oryCun2.chrUn0106 679636 67 + 1032594 -----TAAACAGATACAAGAAATATCA--AATAAAATACGTA-AAAGAATCATTCAAAGTTCACTGCGGACACTG------------ i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 4831 78 + 30858 TCT-ACACACAAATA-AAGAAGGACCAGAAGT-AAGTAATTC-TGAGATCCAGTCAGTGTGCACTGAGGACAGTGCGGAACA----- i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29972902 77 - 76506943 TCT-GCACACAGATA-AAGATTACTCAGCAG--AAGTAATCC-TGAGATTCAGTTAATGTCCACTGAGGACACTGAGGGACA----- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147432 83 - 94057673 TCT-GCAGACAGATA-CAGAAACATCAGAAACAAAGGAACTG-TGAGAT-CATTCCACGCTCACTGTGGACACTGAAGTACAAACCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3192988 84 + 42029645 CTG-GCAGACAGATA-AAGAAGTATCAGAAATAAAGTAATTC-TGATATCCATTCACCGCTCACTCTGGACACTGCAGGATAAATTA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 109822 84 - 3408981 TCT-GAAAACAGATA-AAGAAATACCAGAAATGAAGTAACTC-TGAGATTTGCCCAATGTTCACTATGGACACTGAAATGCAAATCA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59901 81 + 154172 TCT-GCAAACAAAT-----AAGCATTAGAAAGAAAGAAACTCTTGAGATTTAATCAATGTTCACTATGGACACTGAAATGCACATCA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=36315.000000 s hg19.chrUn_gl000223 65062 35 + 180455 GTTTAACAggtgctgttaggaaaaaca--c-------------------------------agttt-at s panTro2.chr12 192427 35 - 135371336 GTTTAACAggtgctgttaggaaaaaca--c-------------------------------agttt-at i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228935 35 - 136387465 GTTTAACAAGTGCTGTTAGGAAAAACA--C-------------------------------AGTTT-AT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201576 34 - 134511895 GTCTAACAGGTGCTGTTAGG-AAAATA--C-------------------------------AGTTT-AT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 8979 61 - 51117 CTTTAACAAGTCCTATGAAGAAAAAGA--CAACTCTA-----GGTAGGCAGAATTCTTCaaagccc-gt i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_103331.1-57811 23466 33 - 57811 TTTTAACAGATGCTACAAAGAAAAAGA--C-------------------------------TATTT--- i tupBel1.scaffold_103331.1-57811 C 0 I 5392 s cavPor3.scaffold_248 224802 37 + 667635 -TTTAATAAGTGTTATGAAGAAAAAGTACC-------------------------------AAGTTTAT i cavPor3.scaffold_248 C 0 I 964 s oryCun2.chrUn0106 679703 31 + 1032594 -------AAAGGCTGTGAAGAAAAAGAACT-------------------------------ATCTTAGC i oryCun2.chrUn0106 C 0 I 24 s turTru1.scaffold_102261 4909 58 + 30858 --------GGTGCTGTGAAGGACATGA--CAGCTCTGTGTTAggcagatggaattttggaaagctt-at i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29972979 53 - 76506943 ---------GTGCTGGGAAGGACAAGG--CAGCTTTGTGTT----ACATAGACTTTTGGAAAGCTT-AT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147515 66 - 94057673 CTTTAACAGATGCTGTGAAGCACTAGA--CAATTCTACTTCAGGCAGATAGAATTTtggaaaactt-ac i equCab2.chr8 C 0 C 0 s canFam2.chr26 3193072 61 + 42029645 CTTTAACAGGCGCAATGAAGT-----A--CAAGTCTATTTTTGGCATTTGGAATTTTGGAGAGTTT-AA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 109906 66 - 3408981 CTTTAATAGGTGCTATGAACTAAAACA--CAACTGGATTTTaggcagatggaattttggaaagttt-at i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 59982 66 + 154172 CTTCAACAGGTGCTGTGAAGTAAAAAA--GGACTCTTGCTTAAGCAAATGGAATTCTGGAAAGCTT-AC i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=57540.000000 s hg19.chrUn_gl000223 65097 21 + 180455 a-tgatctgtattaaaacagat s panTro2.chr12 192462 21 - 135371336 a-tgatctgtattaaaacagat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228970 21 - 136387465 A-TGAtttgtattaaaacagat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201610 21 - 134511895 A-CGATTTGTATGAaaacagat i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 9040 21 - 51117 g-tgacttgtattaaaacaaat i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 679758 21 + 1032594 A-TGATTCCTGTCAAAACAGGT i oryCun2.chrUn0106 I 24 C 0 s turTru1.scaffold_102261 4967 21 + 30858 g-tgatttgtattataacagat i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29973032 4 - 76506943 ------------------AGAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147581 21 - 94057673 g-tgatttgtattaagacggat i equCab2.chr8 C 0 C 0 s canFam2.chr26 3193133 21 + 42029645 A-TGGTTTGTATTAGAACAGAT i canFam2.chr26 C 0 I 177 s loxAfr3.scaffold_113 109972 22 - 3408981 gagattttgtattaaagcagat i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 60048 21 + 154172 G-TAGTATGCATTAAAATGGAT i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I a score=186917.000000 s hg19.chrUn_gl000223 65118 100 + 180455 ttgagtttcaatcaactttttc-c-tttaccagctagatgacttttggcaaaaac-------aaacaaattt-caccattctgagc-ctaatttc----ct-attaaaatcttcta s panTro2.chr12 192483 100 - 135371336 ttgagtttcaatcaactttttc-c-tttaccagctagatgacttttggcaaaaac-------aaacaaattt-caccattctgagc-ctagtttc----ct-attaaaatcttcta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 228991 97 - 136387465 ttgagtatcaatcaacttttttac-tttaccagctagatgacttttggcaa-----------aaacaaattt-caccattctgagc-ctagtttc----ct-attaaaatcttcta i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201631 97 - 134511895 ttgagtttcaatcaacttttttcc-tttaccagttagatgacttttggcaa-----------aaacaaattt-caccattctgagc-ctagtttc----ct-attaaaatcttcta i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 9061 98 - 51117 ttgaatttcaatcaactttttc-c-tttattggctatgtgacttttggcaa-----------aaacaaactt-cttctttctgagc-tttattttcctact-attaaaatcttc-- i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 679779 76 + 1032594 AGGAGCTTCCATCAACCATTTT------------------------GGCAA-----------AAACAAACTT-CATCCTACTGAGCACCACTTTC----CTAATTAAAATCTTCTA i oryCun2.chrUn0106 C 0 I 774 s turTru1.scaffold_102261 4988 110 + 30858 ctgagtttcaatcaaccctttccc-tttgctggctttgtgactttggggaaaaacgaataggaaactaaggctcatttttctgagccttagtttc----ct-attaaaattttcta i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29973036 81 - 76506943 CTAAGTTTTAATCAACTTTTTCCT-TTTCCTGGCTTTGTGACTTTGGGTAAGAACAAATAGAAAACTAAGGT-------------------------------TTAAAA---tcta i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147602 104 - 94057673 ctgagtttcactcgaccttttccc-tttactggctgtgtg--tctgggcaaaaacaaac---taactaactt-catctctctgagccttcttttc----ct-attaaaatcttcta i equCab2.chr8 C 0 C 0 s canFam2.chr26 3193331 101 + 42029645 ttgagtttcaatc-agctttcccc-ttcacaggctacatagctttgggcaaaaaca-------gactaactt-catctttatgagccacagctcc----ct-ACAAaagtcttcta i canFam2.chr26 I 177 C 0 s loxAfr3.scaffold_113 109994 104 - 3408981 ttgattttcaatcaaacttttccc-tttactggctatgtgactttggtcaaaaacaaat---gaacacactg-tatctttctgagcattagcttc----ct-AGTaaattattc-- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 60069 76 + 154172 TTGAGTTTCAATCAATCTTGTCTCATTTACTG------------------AAAA--------------ACTG-CATTTTTCCAAGCCTTACTTTC----Ct-attaaaatcttc-- i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I a score=32039.000000 s hg19.chrUn_gl000223 65218 35 + 180455 ttaatatatcct---taacttttgtctgccatttttgt s panTro2.chr12 192583 35 - 135371336 ttaatatatcct---taacttttgtctgccatttttgt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 229088 31 - 136387465 ttaatatatcct---taatttttgtctgccaat----t i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 201728 18 - 134511895 ttaatatatcct---taactt----------------- i rheMac2.chr11 C 0 I 342 s micMur1.scaffold_9962 9159 30 - 51117 ----tatatcctttctaatttttgtctgccattt---- i micMur1.scaffold_9962 C 0 C 0 s turTru1.scaffold_102261 5098 28 + 30858 ------taactttcctaatttatgtctgccaatc---- i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29973117 28 - 76506943 ------taaccttcctaatttatgtctgccaatc---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147706 28 - 94057673 ------taaccttcctaacttatgcctgccagtt---- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3193432 28 + 42029645 ------taaacctcttaatttatgtctgccagct---- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 110098 29 - 3408981 ----tatatcctt-tctaattttgtctgcaaatt---- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 60145 30 + 154172 ----tatattgttctttagttttgcctgccaatt---- i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 679855 774 + 1032594 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I a score=227425.000000 s hg19.chrUn_gl000223 65253 80 + 180455 ctacccatttcagaaggaaatgggttaaaatctcacaatatgactagagattggtcagttt--ttcctta-taattctgctga s panTro2.chr12 192618 80 - 135371336 ctacccatttcagaaggaaatgggttaaaatctcacaatatgactagagattggtcagttt--ttcctta-taattctgctga i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 229119 80 - 136387465 ctatccatttcagaaggaaatgggttaaaatctcacaatatgactagagattggtcagttt--ttcctta-taattctgctga i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 202088 78 - 134511895 ctatccatttcagaaggaaatgggttaaaatctcacaatatgact--agattagtcagttt--ttcctta-taattctgctga i rheMac2.chr11 I 342 C 0 s micMur1.scaffold_9962 9189 76 - 51117 ctatcaatttctgaaggaagtgtgttaaaatttcccaatatcactataga----ccagttt--ttcctta-taattctgttga i micMur1.scaffold_9962 C 0 C 0 s turTru1.scaffold_102261 5126 76 + 30858 ctatcattttctgaaggaagtgtgttaaactctcccagtatgattacagattggtcagttt--ttccttg-caattctg---- i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29973145 65 - 76506943 atatcaatttctaaaggaagtatgttaaatt---------------cagattggccagttt--ttccttg-tacttctgttga i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64147734 79 - 94057673 ctagcaatttctgagggaagtgtgttaaaatctcccaagatga-tacagattggtcaattt--ttcctca-taatcctgctga i equCab2.chr8 C 0 C 0 s canFam2.chr26 3193460 81 + 42029645 caatcaatttctgatggaaatatgttaaaatctcccaataagattataaattggtaaatgt--taccttgttaatcctgttga i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 110127 80 - 3408981 ctaccgatttctaaaagagatgtattaaaatctctcagtatgattacagactgttcacttttcttccttg-taattctgtt-- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 60175 78 + 154172 ctatcaatttctgaaggaggtatgttaaaatctc-caatatgattattgataggtcagtt---ttccttg-taattctgttga i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 679855 774 + 1032594 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I a score=95909.000000 s hg19.chrUn_gl000223 65333 105 + 180455 tgtttggattatatgctta-tggctat--gttgtttgatgcgtcaagg--ttaaatag-gggttttaaaaaatc-att-----------gtgtaacaacgcttcatacccccaataatg-cttt s panTro2.chr12 192698 105 - 135371336 tgtttggattatatgctta-tggctat--gttgtttgatgcgtcaagg--ttaaatag-gggttttaaaaaatc-att-----------gtgtaacaacgcttcatacccccaataatg-cttt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 5 105 + 4092 TGTTTGGATTATATGCTTA-TGGCTAT--GTTGTTTGATGCGTCAAGG--TTAAATAG-GGGTTTTAAAAAatc-att-----------gtgtaacaacgcttcataccccaaataatg-cttt i gorGor1.Supercontig_0070003 N 0 C 0 s ponAbe2.chr12 229199 105 - 136387465 tgtttggattatatgctta-tggctat--gttatttgatgcgtcaagg--ttaaatag-gggttttaaaaaatc-att-----------gtgtaacaacgcttcataccccaaataatg-cttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 202166 106 - 134511895 tgtttggattatatgctta-tggctat--attgtttgatgcgtcatgg--ttaaatagagggttttaaaacatc-att-----------gtgtaacaatgcttcataccccaaataatg-cttt i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 9265 95 - 51117 tgtttggattatatttttt-tatttattaatcattta--------------ttaatca-tagtttttatcaatc-att-----------atgcaatgatactgtgtatcccaaataatg-cctt i micMur1.scaffold_9962 C 0 C 0 s turTru1.scaffold_102261 5202 81 + 30858 ----ttgattgtatgctta-aagctat--gttgtttgatgcacagagg--ttatatac----ttctggaggatt-actctttaatcattatgtaa----------------------------- i turTru1.scaffold_102261 C 0 I 7 s bosTau4.chr17 29973210 52 - 76506943 tgttttgattatatgctta-aagttat--gttgtttgaagcacagaga--ttatata------------------------------------------------------------------- i bosTau4.chr17 C 0 I 40 s equCab2.chr8 64147813 98 - 94057673 tgcctggattatgtatttgtgaaatgt--------------acagagc--ttacgtat----ttctggagaatt-attctttaaccattagatgataacattccacatctcaaataaca----- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3193541 72 + 42029645 tatttggattatgtgttta-aagatat--attgttgga--cacagagcagttgtggat----ttcaggaaaatt-atg------------------------------------------cttt i canFam2.chr26 C 0 I 29 s loxAfr3.scaffold_113 110207 82 - 3408981 -gtttggttt--------a-aggctac--gttgtt-----------gg--ttaaatac----ttctggatgatt-ttt-----------ttttaatcatcacataatctctaaataatg-cttt i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 60253 102 + 154172 agcttggtttagatgttca-aagttat--attgtttggtgcagagaag--ctatgtat----ttctagggaattgctt-----------ctttagtcactctata--ccccaaataatgccttt i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 679855 774 + 1032594 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I a score=100766.000000 s hg19.chrUn_gl000223 65438 54 + 180455 ttgcct-taaaatctatt-ttatcttagatgaagtctgcaacatcagcattctttt s panTro2.chr12 192803 54 - 135371336 ttgcct-taaaatctatt-ttatcttagataacgtctgcaacatcagcattctttt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 110 54 + 4092 ttgcct-taaaatctatt-ttatcttagatgaagtctgcaacatcagcattctttt i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 229304 54 - 136387465 tcacct-taaaatctatt-ttattttagatgaagtctgcaacatcagcattttttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 202272 54 - 134511895 ttgcct-taaaatctatt-ttatcttagacgaagtctccaacatcagcattctttc i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 9360 56 - 51117 ttgcctaaaaaacctattataatcttagatgaagttggcaacatcagcattttttt i micMur1.scaffold_9962 C 0 I 133 s loxAfr3.scaffold_113 110289 54 - 3408981 ttgtct-taaaacctatt-ttatcttagacgtagctgtcaacatcagcattctttt i loxAfr3.scaffold_113 C 0 I 110 s dasNov2.scaffold_7587 60355 51 + 154172 ttgcct-taaaatctatt-t--tcttagatgttgttagcaacatcagcattcttt- i dasNov2.scaffold_7587 C 0 I 4845 e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 679855 774 + 1032594 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e turTru1.scaffold_102261 5283 7 + 30858 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I e bosTau4.chr17 29973262 40 - 76506943 I e equCab2.chr8 64147911 0 - 94057673 C e canFam2.chr26 3193613 29 + 42029645 I a score=469855.000000 s hg19.chrUn_gl000223 65492 570 + 180455 ttttttttttttttttt--ggtacggtcttgctccctaacccaggctggcatgcagtggcacaatcagagctcactgcaactttgaactccaggctcaagggatcctcctgcctcagcctcccacgtagctggaactacaggtttgtgtgcctccatgcccagctaactgtttttgtattttttttcttt----gtagagacaggatctcgctatgctgcccaggatagtctcaaactcctgggctcaagcaattctcccacctcagcctcccagagtgctaggattataggcatacaacaccacacctggcttcagcattcttttggtatttacgtggtatgttatcatctggtcaactacactaaaaatcttagcatcattatctttgtcccttataagcagctcagagctcaaatttattggtgtttaaaaaaaaaaa--------aatccaaattggccaggagcgatggcttacgcctgtaattccagcactttgggaggccaaggcagatggatcacctgaggtcaggagttc--aaccagcctgaccaacatgatgaaaccccatctctactaaaaata s rheMac2.chr11 202326 580 - 134511895 tttttttttcttt------ggtagggtcttgctccctcacccaggctggcatgcagtggcacaatcatagctcactgcaaccttgaactccgggctcaagggatgctcctgcctcagcctcccaagtagctgggactacaggtttgtgtgcctccatgcccagttaactgtttttgtatttttttttttttttggtagagacaggatctcactatgctgcccaggatagtctcgaattcctaggctcaagtgaccctcccgcctcagccctgcaaagtgctgggattataggcataaaccaccacaactggcttcagcattcttttggtatttacctggtatgttatcatctgttcaactacacttaaaatctcaacatcattatctttgtcccttataagcagcTCCGAGCTCAAATGTATGGGTGTTTaaaaaaaaaaaaaaaaaaaaaTCCAAATTggccaggcgtggtggctcacacctgtaatcccagcactttgggaggccaaggcggatggatcacctgaggtcaggagttcgaaaccagcctgaccaacatgatgaaaccccgtctctattaaaaata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 229358 565 - 136387465 tttttccttt---------ggtagggtcttgctccctaacccaggctggcatgcagtggcacaatcacagctcactgcaactttgaactccaggctcaagggatcctcctgccttagcctcccaagtagctggaactacaggtttgtgtgcctccatgcccagctaactgtttttgtactttttttcttt----gtagaaacaggatctcgctatgctgcccaggata--ctcaaactcctgggctcaagcaatcctcctacctcagcctcccaaagtgctaggattataggcatacaacaccacacctggcttcagcattcttttggtgtttacctggtatgttatcatctgttcaactacactaaaaatctcagcatcattatctttgtcccttataagcagctcagagctcaaatttattggtgttaaaaaaaaaaaa------aaaaatccaattggccaggagcggtggcttacacctgtaatcctagcactttgggaggccaaggcagatggagcacctgaggtcaggagttcaaaaccagcctgaccaacatgatgaaacctcatctctaataaaaata i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 164 564 + 4092 tttttttttccttt-----ggtacggtcttgctccctaacccaggctggcatgcagtggcacaatcatagctcactgcaactttgaactccaggctcaagggatcctcctgcctcagcctcccacgtagctggaactacaggtttgtgtgcctccatgcccagctaactgtttttgta-tttttttcttt----gtagagacaggatctcgctatgctgcccaggatagtctcaaactcctgggctcaagcaattctcccacctcagcctcccaaagtgctgggattacaggcatacaacaccacacctggcttcagcattcttttggtatttacctggtatgttatcatctggtcaactacactaaaaatcttagcatcattatctttgtcccttataagcagctcagagctcaaattTATTAGTGTTTAAAAAAAAAAA-------AAATCCAAATTggccaggagcgatggcttacgcctgtaattccagcacttcgggaggccaaggcagatggatcacctgaggtc---agttc--aaccagcctgaccaacatgatgaaaccccgtctctactaaaaata i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 192857 570 - 135371336 tttttttttttttttttttggtacggtcttgctccctaacccaggctggcatgcagtggcacaatcagagctcactgcaactttgaactccaggctcaagggatcctcctgcctcagcctcccacgtagctggaactacaggtttgtgtgcctccatgcccagctaactgtttttgtattttttttcttt----gtagagacaggatctcactatgctgcccaggatagtctcaaactcctgggctcaagcaattctcccacctcagcctcccaaagtgctgggattataggcatacaacaccacacctggcttcagcattcttttggtatttacctggtatgttatcatctggtcaactacactaaaaatcttggcatcattatctttgtcccttataagcagctcagagctcaaatttattagtgtttaaaaaaaaaaa----------tccaaattggccaggagcgatggcttacgcctgtaattccagcactttgggaggccaaggcagatggatcacctgaggtcaggagttc--aaccagcctgaccaacatgatgaaaccccatctctactaaaaata i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 9416 133 - 51117 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 679855 774 + 1032594 I e otoGar1.scaffold_101698.1-26550 15800 1577 + 26550 I e turTru1.scaffold_102261 5283 7 + 30858 I e loxAfr3.scaffold_113 110343 110 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I e bosTau4.chr17 29973262 40 - 76506943 I e equCab2.chr8 64147911 0 - 94057673 C e canFam2.chr26 3193613 29 + 42029645 I a score=159878.000000 s hg19.chrUn_gl000223 66062 162 + 180455 caaaaataaaccaggcgtggtggcatg----cacctgtaagctcagctacttgggaggctgaggcagaagagttgcttgaacctgggaggtggatgttgcagc---------ccgtgccattgtactccagcctggtgcaacaaaagggaaactccatctcaaaa---aaaaaaaaaa s otoGar1.scaffold_101698.1-26550 17377 166 + 26550 caaaaaatagccgggtgttgtgacagg----tgcctgtggtcccagctacttaggaagcggaggcaggagactcgcttgagcccaggagttggaggttgctgtgagctg---tgatgctacagcactctacccaggggga--cagcttgaggctctgtctcacaa---aaaaaaaaaa i otoGar1.scaffold_101698.1-26550 I 1577 I 74 s rheMac2.chr11 202906 172 - 134511895 caaaaataaaccgggcgtggtggcacgaatctatctgtaagctcggctacttgggaggctgaggcaggagagttgcttgaacctgggaggtggaggttgcagcgagtggagattgtgccactggactccagcctgggacaacaaaagtgaaacttcatctcaaaa------aaaaaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 229923 168 - 136387465 caaaaataaaccaggcgtggtggcacg----cgcctgtaagctccgctacttgggaggctgaggcaggagagttgcttgaacctgggaggtggatgttgcagtgag------ccgtgccattgtactccagcctggtgcaacaaaagggaaactccatctcaaaaaaaaaaaaaaaaa i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 728 160 + 4092 caaaaataaaccaggcgtggtggcacg----cgcctgtaagctcagctacttgggaagctgaggcagaagagttgcttgaacctgggaggtggatgttgcagc---------ccgtgccattgtactccaacctggtgcaacaaaagggaaactccatctcaaaa-----aaaaaaaa i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 193427 162 - 135371336 caaaaataaaccaggtgtggtggcatg----cgcctgtaagctcagctacttgggaggctgaggcagaagagttgcttgaacctgggaggtggatgttgcagc---------ccgtgccattgtactccagcctggtgcaacaaaagggaaactccatctcaaaa---acaaaaaaaa i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 9416 133 - 51117 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 679855 774 + 1032594 I e turTru1.scaffold_102261 5283 7 + 30858 I e loxAfr3.scaffold_113 110343 110 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 224839 964 + 667635 I e bosTau4.chr17 29973262 40 - 76506943 I e equCab2.chr8 64147911 0 - 94057673 C e canFam2.chr26 3193613 29 + 42029645 I a score=110810.000000 s hg19.chrUn_gl000223 66224 77 + 180455 aatccaaaccaacagtgtgtcttttaactgacaaattg-aatacatttaatgtttattgtggtt---------------actg---TTTTTCCCCC s cavPor3.scaffold_248 225803 85 + 667635 -atccaaagtaataacctgt-ctttgcctcacaaattc-tatatactca-tagttattgtggttactacaccatttactattc---ttttt----c i cavPor3.scaffold_248 I 964 C 0 s oryCun2.chrUn0106 680629 66 + 1032594 ---CCAAATCAAAAATCTTTGTTTTAACTGAAGAACTCAAATATACTTATTAATGATTG--------------------ATTC---TTTTT----C i oryCun2.chrUn0106 I 774 C 0 s panTro2.chr12 193589 68 - 135371336 aatccaaaccaacagtgtgtcttttaactgacaaattg-aatacatttaatgtttattgtggtt---------------actg------------C i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 888 76 + 4092 aaTCCAAACCAACAGTGTGTCTTTTAACTGACAAATTG-AATACATTTAATGTTTATTGTGGTT---------------ACTG---TTTTTCCC-C i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 230091 76 - 136387465 aatccacaccaacagtgtgtcttttaactgacaaactg-aatacatttaatgtttattgtggtt---------------actg---ttatTTCC-C i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 203078 77 - 134511895 aaTCCAAACCAACAGTCTGTCTTTTAACTGACAAATTG-AATACATTTAATGCTTATTGCGGTT---------------ATTG---TTTTTTCCCC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 9549 87 - 51117 AATCCAAACCAATAAGCTATCTTTTAACTGACAAATTC-AATACCTTT-ATATTTACTGTAGTTTTTATATT-------ATTGCTCTTTTTTTTCC i micMur1.scaffold_9962 I 133 C 0 s otoGar1.scaffold_101698.1-26550 17617 91 + 26550 AATCCCAAACAATAAACTGTACTTTAACTGACAAATTC-AATACGTTT-ATACTTATTGAAGTTTTTATATTTGTC---ATTGCTTCTTTTCCCCC i otoGar1.scaffold_101698.1-26550 I 74 C 0 s loxAfr3.scaffold_113 110453 78 - 3408981 aatccaaa--------gagtcttttaatttaagaattc-aatacactg-atatttattgtcgtccttgtatatatc---attg---cctttttc-- i loxAfr3.scaffold_113 I 110 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e turTru1.scaffold_102261 5283 7 + 30858 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e bosTau4.chr17 29973262 40 - 76506943 I e equCab2.chr8 64147911 0 - 94057673 C e canFam2.chr26 3193613 29 + 42029645 I a score=223564.000000 s hg19.chrUn_gl000223 66301 71 + 180455 CTCC--TTTCTTGccttcaaagcctcaatttctgta--cttgctaaaatggtgaagataaagtggacctcacaat s otoGar1.scaffold_101698.1-26550 17708 70 + 26550 CTCC--TTTCTTGccttcagagtctctatttgttca---ttgctaaaatggtaaagataaagtggacttcacact i otoGar1.scaffold_101698.1-26550 C 0 C 0 s micMur1.scaffold_9962 9636 68 - 51117 TCC-----TCTTGccttcagaacctctatttgttca--tttgctaaaatgatgaaaataaagtggacttcacagt i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 203155 71 - 134511895 CTCC--TTTCTTGCCTTCAAAGCCTCAATTTCTGTA--TTTGCTACAATGGTGAGGATAAAGTGGGCCTCACAAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 230167 71 - 136387465 CTCC--TTTCTTGCCTTCAAAGCCTCAATTTCTGTA--TTTGCTAAAATGGTGAAGATAAAGTGGACCTCAAAAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 964 71 + 4092 CTCC--TTTCTTGCCTTCAAAGCCTCAATTTCTGTA--CTTGCTAAAATGGTGAAGATAAAGTGGTCCTCACAAT i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 193657 71 - 135371336 CTTC--TTTCTTGccttcaaagcctcaatttctgta--cttgctaaaatggtgaagataaagtggacctcacaat i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 680695 55 + 1032594 CTCTTCTTTCTGGCCTTCCA--------TTTCTTTA--TTTGCTAAAATGGTAAGGATAAAGTAG---------- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 225888 55 + 667635 ctct--tttcttgcctcctaat------cttctttgtttttgttAAAATGGTGATAATAAAGT------------ i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3193642 70 + 42029645 ctcc--tttcttggcttttaagcctcc-tttTTTCA--CTTGCTAAAATTGTGAGGATAAAGTGGACCTTTGGGT i canFam2.chr26 I 29 I 12 s equCab2.chr8 64147911 71 - 94057673 ctcc--tttcttgcctACTAATCTTCCATTTTTTTA--CCTGCCAAAACGGTGAAGATAAAGTGGACCTGTGGGT i equCab2.chr8 C 0 I 13 s loxAfr3.scaffold_113 110531 71 - 3408981 ctcc--ctttgtgccttctgagccttcctatctgtA--CCTGCTAAAATGGTGAGGATAAAGTGGACCTCAAAAT i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e turTru1.scaffold_102261 5283 7 + 30858 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e bosTau4.chr17 29973262 40 - 76506943 I a score=787385.000000 s hg19.chrUn_gl000223 66372 356 + 180455 gggagtctaa---------gaaacaaatgaggtgttaaaaggaaagcgACTG-----GGGCCTTGTAATAACAGTTacag--ctaacattccagtgctttctgtatgtgagacaatatactaagca--tttta-aa-------tttaactc--------------atgcacaaccctataaggcgtttaac------------ataatctccattttacagagagaaaac-tggga--caatg-agtgattgtaaaa-tgtgcctgtgattgcacatttagtaagtagcaaaATTCAAATGTTAATTCTCTATCCTGCTAT---------------------------------------------GTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATG-AATACTAAAGTCA---TATTGTCATTTGTGCATATCTA--CATGCAC--------------------------AAACACACACAACATAAATCCTGGAGTCAGCTCCTATT s otoGar1.scaffold_101698.1-26550 17778 340 + 26550 gccagtctga---------ggaacaaaagaga---taaaatgaaagtgactg-----gtacCTTGTAACAAGAAGAagaa--ctaatatttgagtgctttctatgtgtaagacaa-----taagct--ttttacaa-------tttaatcctt------------acagaaaaccctagaaagcatttaac------------ataatctccattttacagaaaaaaaaa-tgaga--cttaatagtgatt-tagAG-TGTCCTCATGACTACA--------AAA-AGCAGAATTAGAATGTT-AATCTCTATTCTGTTAT---------------------------------------------GTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTTACTA-CAAAATCA---T---GTCATTTGTGTATGTTTATGCATATAT--------------------------ACACATGCACAACATAAATCTTGGACTAAGCTCTTATT i otoGar1.scaffold_101698.1-26550 C 0 I 277 s micMur1.scaffold_9962 9704 354 - 51117 gggagtttga---------ggaacaagtgagatattaaaaggaaagtgactg-----ctgtcttggaacaataataatag--ctaacatttgagtgctgtctatatgtaaggcaatatactaagca--ttttacaa-------cgtaatcctt------------acagaaaaccctataaagcacttaaa------------ataatctccactttacacagaaaaaaactgaaa--cttag-agtgatt-tagag-tgtgctcatgatcacacagctattaag-agcagaattagaatgtt-gtcctccatcctgctat---------------------------------------------gttcaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agcatttgctACCCAAATCA---TAACATCATTTGTGTATATTTATGC--------------------------------ACACACACACAACATAAATCCTAGAATTAGTTCTTATT i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 203226 369 - 134511895 GGGAGTCTAA---------GAAACAAAAGAGGTATTAAAAGGAAAGCGACTT-----GGGCCTTGtaataactgttacag--ctaacgttccagtgctttctatatgtgagacaatatactaagca--tttta-aa-------tgtaactcttatgcacaaccctatgcacaaccctatgaggcgtttaac------------ataatctccgttttacaaagagaaaac-tggga--caatc-agtgatcgtaaaa-tgtgcctgtgattgtacatttagtaagtaacaaaattcaaatgttaattctctatcctgctac---------------------------------------------attgaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agcatgtactcctAAAGTCA---TATCATCATTTGTGCGTATCTA--CATGTAC--------------------------AA--ACACACAACATAAATCCTGGAGTCAGCTCCTATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 230238 367 - 136387465 GGGAGTCTAACAAATGAGTCAAACAAATGAGGTGTTAAAAGGAAAGTGACTG-----GGGCCTTGTAGTAACAGTTACAG--CTAACGTTCCagtgctttctgtatgtgagacaatatactaagca--tttta-aa-------tttaactct------------tatgcacaaccctataaggcgtttaac------------ataatctccattttacagagagaaaac-tggga--caatg-agtgactgtaaaa-tgtgcctgtgattgcacatttagtaagtagcaaaATTCAAATGTTAATTCTCTACCCTGCTAC---------------------------------------------GTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATG-AATACTAAAGTCA---TATTGTCATCTGTGCATACCTA--CATGCAC--------------------------AAACACACACAACATAAATCCTGGAGTCAGCTCCTATT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1035 356 + 4092 GGGAGTCTAA---------GAAACAAATGAGGTGTTAAAAGGAAAGCGACTG-----GGGCCTCGTAATAACAGTTacag--ctaacattccagtgctttctgtatgtgagacaatatactaagca--tttta-aa-------tttaactc--------------atgcacaaccctataaggcgtttaac------------gtaatctccattttacagagagaaaac-tggga--caatg-agtgattgtaaaa-tgtgcctgtgattgcacatttagtaagtagcaaaATTCAAATGTTAATTCTCTATCCTGCTAT---------------------------------------------ATTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATG-AATACTAAAGTCA---TATTGTCATTTGTGCGTATCTA--CATGCAC--------------------------AAACACACACAACATAAATCCTGGAGTCAGCTCCTATT i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 193728 356 - 135371336 gggagtctaa---------gaaacaaatgaggtgttaaaaggaaagcgACTG-----GGGCCTTGTAataacagttacag--ctaacattccagtgctttctgtatgtgagacaatatactaagca--tttta-aa-------tttaactc--------------atgcacaaccctataaggcatttaac------------ataatctccattttacagagagaaaac-tggga--caatg-agtgattgtaaaa-tgtgcctgtgattgcacatttagtaagtagcaaaattcaaatgttaattctctatcctgCTAT---------------------------------------------GTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATG-AATACTAAAATCA---TATTGTCATTTGTGCATATCTA--CATGCAC--------------------------AAACACACACAACATAAATCCTGGAGTCAGCTCCTATT i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 680750 275 + 1032594 --GAGTCTTA---------GGAACAAGTAAAGTATCAGAAGGAATGTGGCA---------CCTGGTATGAACAGTA--AG--TTAA-----------------CATTAGAGACATCATAGTAAGCA--TATTACAA-------TTTCATACTC------------AGATA-ACCCCAAAAAGTAATTTAAC------------ATGATCTCTATTTCACAGACAGAAAAC-CACAA---GTGA-AACAATGC----G-TGTTCCCATGT-CCCACAGCTACTCAG---CAGAAC------GTTATTTCTCT-TTCT---------------------------------------------------TGCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATTTACTATCAAAATCA-------------TGT-TATTTGTT--CACATTA--------------------------ATGCACAGA--------------------------ATT i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 225943 332 + 667635 --GGACCTCA---------G-----AGTGGGATCTGGAGGGGAAAATGACA-----------TAGTTT--ACAGTG--AG--GTGAC-----------TGGTGCCTTATAACAACTGTAACAGATAGGTAATACAGCAAGTACTTTTATCATC------------ATACA---CATCACAAATACTTTAAC------------ACAATAGCCATTTTACAGAGAGATAAT-TTGAA---AACT-AGTAATTT---AG-TGTGCCCATGA-TACACGGCTATTAAGAAACAAAACT---GTGTTATTTCTTT-TCCTGCTGT---------------------------------------------GTGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATTTGCTAACAAAACCATTGTAATGTCCTTTGTGTATTTATA--CATAGAC--------------------------ATGCACACACAACACAAATTCTAGAATTAGCTCTCATT i cavPor3.scaffold_248 C 0 C 0 s turTru1.scaffold_102261 5290 375 + 30858 GGGATTCTGA---------GGAATAAATAAGATATTAAAAGCAAAGTGACTA-----GTTCCTTGTaataataat---ag--ctaacatctgagtgctttctatatataagacaaaatactaagca--ctttacaa-------tttaaccctc------------acagacaaccc-aaaaggcatttaac------------aaaatctccatcttatagaaagaaaac-tgaga--cttag-aa------------tgtgcccataattgcacaattattaaacatcagaaatggaatGTTATTTCTCTTTCTTGCTAC----------------------------------------CTCTTGTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATTTAGTACCAAAATCA---TGTCAG---TTGTGTGTATTCATGTacacatatgtacacacacacacacacacacacacacacacacacCATATATCCTGGAATTAGCTCTTACT i turTru1.scaffold_102261 I 7 C 0 s bosTau4.chr17 29973302 585 - 76506943 GGGATTCTGA---------GGAATAAATGAGATATTAAAGGGAAAGTGACTA-----GTTTCTGGCaataacaat---agctctcacatctgagtgttttcagtatataagacaaaatactaaaca--ctttataa---------caaccctc------------acagacaaccc-aaaaggcatttgacaaaaaagcattaaaaatctccattttatagaacaaaaaa-tgaaa--cttag-ag------------tgtgccaatgactgcacaactattaagtatcagCAAT-GAATGCTA-TTCTCTTTTTTGCTATGTTCAGGGTTGTTGACATttagttgcttagtcgtgtctgactctttttcaaactccatggactatagccctccaggctcctctgtccgttggatttcccagacgagaatactagagtaggttgccatttccttccccagggatcttcctgacccagggatcaaacctgcgtctcctcaattgtcaggtggattcttttatgactgaaccacctgggaagtcctACATTCAAGACATTTACTTCCAAAATCA---TA-CAGTTATTGTGTGTATTCATGTACAGATATGT----------------------TCACACACTCACCCTACATCTCAGAATTAGCTCTTATT i bosTau4.chr17 I 40 C 0 s equCab2.chr8 64147995 337 - 94057673 CGGATTCTGA---------GGAATAAACGAGACTAC----------------------TTCCTCGTGATGACAAG---AC--CTGACACCTGAGTGCCTTCTACACGTCATACAAAATGCCACACA--CCCTGTAA-------CGTAACCCTT------------ACACATGACCC-AGCAGGGCTCTGAT-----CTCTCTGATAAT--ctgttttacagaa---aaac-tgagg----caa-agtgacat---agctgtgcccatgactgcacagctattaaagagcagaactggaaGGTTATTTT--TTTCTTGCTAT---------------------------------------------GTTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTTGCCACCAAAATCA---TAACATCATTTGTGTGCATCTATGTACGTAC--------------------------ACACACACTGACCACACAGCCTGCAATTAGCTGTCATT i equCab2.chr8 I 13 C 0 s canFam2.chr26 3193724 339 + 42029645 GAGATTCTGA---------GGAATATATGAAATAATAAAAGGAAAA-GATTA------TTCCTTGTAATAACAG--------CTAAGATATGAATGCTTTCTCTAATTAAGGGAAAATACTAAGCA--CTTTATAA-------ATTGACCCTC------------ACAGAGAACCC-AGGGGGCATTTAAC------------ATAATCCCCACCTTACTCAAAGCAAGC-AGAAGTCTTTAG-AGTGACTC---AG-TGTGCCCCTGACTACATAGGTATTTGGGAGCAGAACGGGAATACTGTTTTTCTTTCTTGCTAC---------------------------------------------ATTCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCACTTACTACTAAAATCA---TG-------TGGTGTG------TGTACTTAC--------------------------GCAGACACACACCATACATCCTCGAATTAGCTCTTATA i canFam2.chr26 I 12 C 0 s loxAfr3.scaffold_113 110602 339 - 3408981 TGAATTCTGA---------GGA-----TGTGATTTTAAAAGGAATATGATAAACACAATGCCTTGTAAAAGCAATAACAG--CTTACACCtgagtgctttctatacacaaggcaaaatactaagca--cttcacaa-------tttaatcttc------------acatatgaccctgtaagggatttaac---------gttataatctccattttacagaaagaaaac-cgaga--ctcag-atggactg---ag-tgtgcccataactgcacagtaattaagcagca-aaccggaatGTTATTTCTCCTTCCTGCTGT---------------------------------------------GTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTTACTATCAAAATCA---TAATGTTATTT-------------CACACAC--------------------------ACATACA---------AATCCCAGAATTAGCTCTTATT i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=253948.000000 s hg19.chrUn_gl000223 66728 79 + 180455 CCCATGCACACATTCAGTCA-CTAATTCCCACAAAAATATAAATGAAGGACGCCCTGCCTC---AA--CTGTATCACACTAACAA s panTro2.chr12 194084 79 - 135371336 CCCATGCACACATTCAGTCA-CTAATTCCCACAAAAATATAAATGAAGGACGCCCTGCCTC---AA--CTGTATCACACTAACAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1391 79 + 4092 CCCATGCACACATTCAGTCA-CTAATTCCCACAAAAATATAAATGAAGGACGCCCTGCCTC---AA--CTGTATCACACTAACAA i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 230605 81 - 136387465 CCCACGCACACATTGAGTCA-CTAATTCCCACAAAAATACAAATGAAGGACGCCCTGCCTC---AACCCTGTATCACACTAACAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 203595 81 - 134511895 CCCATGCACACATTCAGTCA-CTAATTCCCACAAAAACACAAATGAAGGACGGCCTGCCTC---AACCCTGTACCACACTAACAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 10058 80 - 51117 TTCATGCAAACATTCAGTCA-CTTATACTTACAAAAACACAAATGAAGAACAACCTGCTCC---AC-CTTGTATCACGCTAAAAA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_101698.1-26550 18395 80 + 26550 TTAATGTACACATTCAGTCA-CTTATTCTCACAAAAACACAAATGAAGAACAACATGCCTC---AC-TCTATATCACACTAAAAA i otoGar1.scaffold_101698.1-26550 I 277 I 2096 s cavPor3.scaffold_248 226275 80 + 667635 TCCATGTACATACTCTGCCA-CTGATGCCAGAATAACAACAAATAAAGATC----AGCCTCTCTAACCCATTATCATCTTAAAGA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 681025 65 + 1032594 TTTATTAACTTATTC--CCA-CAGAAAC----------ACAAATTAACAAC----TGCCTC---AACTCGATATCATACTAAAAA i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 5665 77 + 30858 TCCATGCAGACATTCGGTCCCCTTAGTTCCACAGAAATACAAATGAAGAACAGCCTGCT-C---ATCCCTACGACTAA----AAA i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29973887 79 - 76506943 TCCATGCACACATTCTGTCACCTTAGTTCCACAGAAACACAAATGAAGAACAGCCTGCT-C---ATCCCTATGACACACT--AAA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64148332 78 - 94057673 TCTATGTACACCTTCAGTCACCTTATTCCCACAGACACATAC---ATCAACAGCCTGCT-C---ATGCCCATATCATACTAAAAA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3194063 80 + 42029645 TCCGTGCACACATTCAGTCACCGTATTTCCACAGAAACACAAATGATGAACGGCCTGCT-----GTCCCCAAATCATACCAAAGG i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 110941 78 - 3408981 TCCATGTACACA----GTCATATTATCCCCACAGGAAAACGAATGAAGAACAGCCTGCCTC---ACCCCTTTATCATACTAAAAA i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=704716.000000 s hg19.chrUn_gl000223 66807 216 + 180455 GCAGCACT-----------------TTCTTTTTCATGCCTTTTTGTGGTTCAAACTTCAGTGCCAACTCAGAAACACACA--GCAGTTTCTCCC---------AGTTATACAAGAAATG---ACTCCTTTATAC--CTTAAATTGTGATAATACATAAATCTTAGAACAAAAGCTGGCA-CACAGTCAT-ACG----AAACATATACTAGCtataattattattataaaagtaata-tatGATGGCAAAATATAAA s panTro2.chr12 194163 216 - 135371336 GGAGCACT-----------------TTCTTTTTCATGCCTTTTTGTGGTTCAAACTTCAGTGCCAACTCAGAAACACACA--GCAGTTTCTCCC---------AGTTATACAAGAAATG---ACTCCTTTATAC--CTTAAATTGTGATAATACATAAATCTTAGAACAAAAGCTGGCA-CACAGTCAT-ATG----AAACATATACTAGCtataattattattataaaagtaata-tatGATGGCAAAATATAAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1470 214 + 4092 GCAGCACT-----------------TTCTTTTTCATGCCTTTTTGTGGTTCAAACTTCAGTGCCAACTCAGAAACACACA--GCAGTTTCTCCC---------AGTTATACAAGAAATG---ACTCCTTTATAC--CTTAAATTGTGATAATACATAAATCTTAGAACAAAAGCTGG---CACAGTCAC-ACG----AAACATATACTAGCtataattattattataaaagtaata-tatGATGGCAAAATATAAA i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 230686 221 - 136387465 GCAGCACTTTAA------------CTTCTTTTTCATGCCTTTTTGTGGTTCAAACTTCAGTGCCAACTCAGAAACACACA--GAAGTTTCTCCC---------AGTTATACAAGAAATG---ACTCCTTTATAC--CTTAAATTGTGATAATACATAAATCTTAGAACAAAAGCTGGCA-CACAGTCAT-ACG----AAACATATACTAGCTATAATTATTATTGTAAAAGTAAAA-TATGATGGCAAAATATAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 203676 211 - 134511895 GCAGCACT-----------------TTAACTTG-----TTTTTTGTGGTTCAAACTTCAGTGCCAACTCAGAAACACACA--GCAGTTTCTCCC---------AGTTATACAAGAAATG---ACTCCTTTATAC--Cttaaattgtgataatacataaatcttagaacggaagctggca-cacaggcac-act----aaacatatattagctataattattattataaaagtaaaa-tatGATGGCAAAACATAAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 10138 239 - 51117 GCAGCACTTAAAAAGCCAA--ACTATTCCCTTTCATGCCTTTCTGTGATTCAAATTTCAGTGCCAACTCAGAAATACATACTGAGGTTTCTTCCTCATTTCTTTGTTATACAAGAAATG---ATTATTTTATAC--CTCCAATT----TAATATATAAACCTTAAAACTATAGCTGGCA-CACAGCCATCACT----AAACAAGTATTAGCCACAATTATTATTACAAAAGTAAAA-TGTAATGGCAAAATATAAA i micMur1.scaffold_9962 C 0 C 0 s cavPor3.scaffold_248 226355 216 + 667635 GTACCACT----TAACCAA--GTTCTTCCCTTAGAAGCCTTTTTGTGATCCAAATCTCAGTGCTATCTTAGAAACATACAGCAAGGTTTCTCCC---------AGTTATAC---AAATA---ACATTTTTGTAG--CCTAGATTTTGATAATATCTGCACTTTAAAAC---AGCCAGTAGCATAATCATCATTTGAAAAATACTTAACAGTAATAATTATAAAACTAAAAC---AC-CATGGTAGA---------- i cavPor3.scaffold_248 C 0 I 854 s oryCun2.chrUn0106 681090 220 + 1032594 GTAGCACC----TAACCAATGAATCATTCATGGTTTTTTTTTTTGTTATTAAGACTTCAGCGCAAACTCAGAAACACATACTGAGATTTTTAAT---------AGTTATATAAGAAATG---ATTCCTTTATAC--CTTGAATTGTGACAATATATAC------AGAT---AACTGGCA-CTCAGTTATCACT----AAACAAATAATAGTTATAATTACTATTGCAGAGG---AG-AAAGAGAGCTTCCCACAAA i oryCun2.chrUn0106 C 0 I 20 s turTru1.scaffold_102261 5742 234 + 30858 GCAGCACTTAAAACACCAA--GCTCTTCCCTTTCATGTCTTCCTGTGATTCAACCTTCAGTGCCAACTCAGAAACATATATTGAAGTTCCTCCC---------GGTTACATAAGAAATG---ATTCCTTTATATACCTTAAATTGTGAAAATATACTCATCTTAGAACTGGAGCTGGTG-CACATCAGC-ACT----AAACAAATATAAGCCATAATTATTATTACAAAAGTAAAA-CATGATGGCAAAACTTAG- i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29973966 230 - 76506943 GCAGCACTTCAAACACCAG--CCTCTTCCCTTTCATGTCTTCCTGTGATTCAGCCCTTGGTATCAACTCAGAAATACATATTGAAGTTCTTTCC---------AGTTACACAAGAAATG---ATTCCTTTACATACCCTAAATTGTGAAAATATATTCATTTTAGAACTGGAACTGGCA-CACATAAGA-ACT----AAACAAAGA-GAGTCATA---ATTATTACAGAAGTAAAA-TATGATGACAAAACTTAG- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64148410 232 - 94057673 GCAGCACTTAAAAAGCCAA--GTTCTGCTCTTTCATTCTTTTCTGTGATTCAAACTTCAGTGCCAACTCAGAAAGACACACTGAGGTTTCTCCC---------AGTTACACAAGAGATG---ATTCCTCTATAT--ATCAAAATATGAAAACATATGCATCTTAGGATAGGAGCTGGCA-CACAGCAGC-ACT----AAAGAAATATTAGCCATAATTATCATTACAAAAGTAAAA-TCTGACAGCAAAATTTAG- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3194143 201 + 42029645 ACAGTAGTTAAAAAG-AAA--GCTCTTCCCTTTCA-----TGTCATGATTCAAACTTCAGCACCAGCTCAGA-------------------------------------ACAAGAAATGACAATGTCTTTACAT--CTTTAATAGTGAAAATACATGCATCTTAATACAGGAGCTGACA-TACATGAGC-ACT----ACACAAGTTTTAGCTATAATCATTATTGCAACAGTGAAA-AATGATGGCAAAATTCAG- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 111019 235 - 3408981 GCAGCACTTAAGACTCCAA--GCCCTTTCCTTTCATGACTTTCTGTGATTTAAACTTCAACACCAACTCAGAAATGCACACTGAAGTTTCTCCC---------AGTTATGCAATAGATT---ATTCCTTTTCAC--CTTAAATTGTGATAATATATGCACTTTATAACAGTAGCTGGCA-CAGAGTAATCATT----AAATAAATATTAACCATAATTATTATTACAAATGTAAAAGCATGACAGTAAAATGTAAC i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=87904.000000 s hg19.chrUn_gl000223 67023 22 + 180455 AAACATACACAAGCTAAATA----AG s panTro2.chr12 194379 22 - 135371336 AAACATACACAAGCTAAATA----AG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1684 22 + 4092 AAACATACACAAGCTAAATA----AG i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 230907 22 - 136387465 AAACATACACAAGCTAAATA----AG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 203887 22 - 134511895 AAATGTACACAAGCTAAATA----AG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 10377 22 - 51117 AAATGCGTATCAGCTACATA----AG i micMur1.scaffold_9962 C 0 I 4 s cavPor3.scaffold_248 227425 22 + 667635 AAATGTATACAAGGTAAATA----AG i cavPor3.scaffold_248 I 854 C 0 s oryCun2.chrUn0106 681330 26 + 1032594 GGACTTAGTCAAAGCCAGGATCCCAG i oryCun2.chrUn0106 I 20 C 0 s turTru1.scaffold_102261 5976 22 + 30858 AAATGTATGTAAGCTAAATA----AG i turTru1.scaffold_102261 C 0 I 4 s bosTau4.chr17 29974196 22 - 76506943 AAATGTATATAAACTAAATA----AG i bosTau4.chr17 C 0 I 4 s equCab2.chr8 64148642 22 - 94057673 AAATGTATACATGCTAAATA----AG i equCab2.chr8 C 0 I 4 s canFam2.chr26 3194344 22 + 42029645 AAATGTATTCAAGCTACATA----AG i canFam2.chr26 C 0 I 202 s loxAfr3.scaffold_113 111254 21 - 3408981 -AAGGCATACAAGGTAAATA----AG i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=35817.000000 s hg19.chrUn_gl000223 67045 66 + 180455 -------AACTATTATCT------ATGATCTC------------------AC---------CACAGGTAACCATT------------------------------------------CTT----------------------AGGATGA------TGGAAACTATTGTGATAT-TTT s panTro2.chr12 194401 66 - 135371336 -------AACTATTATCT------ATGATCTC------------------AC---------CACAGGTAACCATT------------------------------------------CTT----------------------AGGATGA------TGGAAACTATTGTGATAT-TTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1706 66 + 4092 -------AACTATTATCT------ATGATCTC------------------AC---------CACAGGTAACCATT------------------------------------------CTT----------------------GAGATGA------TGGAAACTATTGTGATAT-TTT i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 230929 66 - 136387465 -------AACTATTAGCT------ATGATCTC------------------AC---------CACAGGTAACCATT------------------------------------------CTT----------------------GAGATGA------TGGAAACTATTGTGATAT-TTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 203909 66 - 134511895 -------AACTGTTATCT------ATGATCTC------------------AC---------CACAGGTAACCATT------------------------------------------CTT----------------------GAGATGA------TGGAAACTATTGTGACAT-TTT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 10403 73 - 51117 -------AACTATTATCT------ATGATCTC------------------ACCAC----AACACAAGCAATCATT------------------------------------------CTTAA--------------------GAGATCG------TGGAAACTACTCTGATAC-TGA i micMur1.scaffold_9962 I 4 C 0 s cavPor3.scaffold_248 227447 85 + 667635 -------AAGTCTTACTG------CTAATCTC------------------ACTACCTCATATACATCTTATTACT-------------------------------TTAAGATAATACTTAA--------------------GAGATGC------TGGAAGCTATTCTGATAT---- i cavPor3.scaffold_248 C 0 I 3534 s oryCun2.chrUn0106 681356 162 + 1032594 -------AA--CTCAATA------CGTATCACACGGGTGGCAGGAAACCAACTACTTGAGCTACCACCTGTCACCTCCCATGATCTGCATTAGCAGGAAGCTGGAATCAAAACAGGAATTAACTCCAGGCACTACAGCATGGGACATGTACTTTGTAAATCCTACTGTGATTTTTTT i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 6002 39 + 30858 -------AACTATAACCT------ATGACCAC------------------A----------CAT----AACCACT------------------------------------------CTTAA--------------------GAGG------------------------------- i turTru1.scaffold_102261 I 4 C 0 s bosTau4.chr17 29974222 63 - 76506943 -------ATTTCTTTCTT------GTGACCAA------------------A----------CAT----AACCACT------------------------------------------CTTAA--------------------GAGGTGG------TATAAACAATCTGGATAT-TTT i bosTau4.chr17 I 4 C 0 s equCab2.chr8 64148668 62 - 94057673 -------AACTGTTATCTATGATTATCACCAC------------------AC---------CACAGATAACCATT------------------------------------------CTTAA--------------------GAGATGA------TTGAAACTA------------- i equCab2.chr8 I 4 I 270 s canFam2.chr26 3194568 65 + 42029645 -------AACTATTACCT----CTATCACCAC------------------AC---------CAC----AATCTTT------------------------------------------CTTAG--------------------GAGATGG-------GAAAACCATTTAGATAT-ACt i canFam2.chr26 I 202 I 190 s loxAfr3.scaffold_113 111275 80 - 3408981 AAACAACTATTATTACCT------ATAACTCT------------------ATCATAG----CACAGATAACCATT------------------------------------------CTTAAA-------------------GAGATGG------TGGGAACTATTCTGACTC-CG- i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I a score=64435.000000 s hg19.chrUn_gl000223 67111 41 + 180455 TCA--TACAATGGAAGCATATG------GTCATATTTAAAAGCTGTT---TT s panTro2.chr12 194467 41 - 135371336 TCA--TACAATGGAAGCATATG------GTCATATTTAAAAGCTGTT---TT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1772 41 + 4092 TCA--TACAATGGAAGCATATG------GTCATATTTAAAAGCTGTT---TT i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 230995 41 - 136387465 TCA--TACAATGGAAGCATATG------GTCATATTTAAAAACTGTT---TT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 203975 41 - 134511895 TCA--TAAAATGGAAGCATAGG------GTCATATTTAAAAACTGTT---TT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 10476 43 - 51117 TGAACAAAAATTTAAGCATACG------CTCATGTTTAAAAACTGTT---TT i micMur1.scaffold_9962 C 0 I 303 s oryCun2.chrUn0106 681518 34 + 1032594 CAA--CAAAATAGAAGCATATG------GTCACATATAAAAC---------- i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_102261 6041 27 + 30858 ----------------TATATG------GTCACATTTAAAAACTGTT---TT i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29974285 36 - 76506943 -------TAACAAAAATATAAG------GTCACATTTAAAAACTGTT---TT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64149000 42 - 94057673 -------TAACAAAAATATAAGGATATGGTCACATTTAACAAATGCT---TT i equCab2.chr8 I 270 C 0 s canFam2.chr26 3194823 36 + 42029645 -------TAACAAAAATATAAGTAT---------TTTTAAAACCACTTGGTT i canFam2.chr26 I 190 C 0 s loxAfr3.scaffold_113 111355 21 - 3408981 ----------------------------TCAACATTTAAAAACTGTT---TT i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=290081.000000 s hg19.chrUn_gl000223 67152 96 + 180455 TGTTTTTTTCCC--ATTATGTGAAGAACA-TCTTTCCAGGTCAATAACCTTATTTCTG-TAAGATATAAACAA----CTCACATAAAATAACAAAA----AAATAAAA s micMur1.scaffold_9962 10822 97 - 51117 TGTTTTTTCCCC--ATTATATAAAGAACA-TCTTTCCTGCTCAATAAACTTATTTCTA-TA--ATATCAACAG----CTTTC-TAAAATAATAAAAAGATAAATAAAA i micMur1.scaffold_9962 I 303 C 0 s rheMac2.chr11 204016 96 - 134511895 TGTTTTTTTCCC--ATTATGTGAAGAACA-TCTTTCCAGGTCAATAACCTTATTTCTG-TAAGATATCAACAA----CTTATATAAAATAATGAAA----AAATAAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 231036 96 - 136387465 TGTTTTTTTCCC--ATTATGTGAAGAACA-TCTTTCCAGGTCAATAACCTTATTTCTG-TAAGATATCAACAA----CTTACATAAAATAACGAaa----aaataaaa i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1813 96 + 4092 TGTTTTTTTCCC--ANTANGTGAAGAACA-TCTTTCCAGGTCAATAACCTTATTTCTG-TAAGATATAAACAA----CTTACATAAAATAACAAAA----AAATAAAA i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 194508 96 - 135371336 TGTTTTTTTCCC--ATTATGTGAAGAACA-TCTTTCCAGGTCAATAACCTTATTTCTG-TAAGATATAAACAA----CTCACATAAAATAACAAAA----AAATAAAA i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 681552 99 + 1032594 TGTTTTTAAACT--ATTATGTAAAGAATACTTTTTCCATGTTAATAATCTTA--TCTG-TAGAATACTGGCAGTTTTCTTATACGAAATGATTAAA----AAGTAGAA i oryCun2.chrUn0106 C 0 I 9173 s turTru1.scaffold_102261 6068 97 + 30858 TGTTTTCTTCCC--GCTATGCAA--AGCA-TCTTTCCAGATCAACAGACATAGTTCTGTTA--ATATCAACAACTTTCTTATTTAAACAAATAAAA----AGGTAGAA i turTru1.scaffold_102261 C 0 I 6 s bosTau4.chr17 29974321 95 - 76506943 TGCTTTCTTCCC--ACTATGCAA--ACCA-TCTTTCCAGGTCAACAGACATAGTACTG-TA--ATATCAACAGC-TTCTTATTTAAACAAATAAAA----AGGTAGAA i bosTau4.chr17 C 0 I 3 s equCab2.chr8 64149042 100 - 94057673 TGTTTTTTTTCCTAACTATGCAAAGACCA-TCTTTCCAGGTTAATAAACATAGTTCTA-TA--ATATCAACATCTTTCTTATATAAAATGATAAAA----GGGTAGAA i equCab2.chr8 C 0 I 6 s canFam2.chr26 3194859 100 + 42029645 TCTTTTTTCCCCCTACTGTGCAAAGAGCA-TCTTTCCAAGTCAATAAATATACTTCTC-TG--ATATCCACAGCATCTTCATATAaaacaattaaa----aggtagaa i canFam2.chr26 C 0 I 6 s loxAfr3.scaffold_113 111376 92 - 3408981 TGTTTT-TCCCC--ACTATATAGAGAACA-TCTTTCCAGGTCAAACGATTT---CCTA-TA--ATATCAACAGCTTTTTTACGTAAAACAATAAAA----A--TAAAA i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=169382.000000 s hg19.chrUn_gl000223 67248 72 + 180455 TCCGACTCATAATTG-ACAAAATA-Cataaaatatgtaggaatat------------------caagacccatatg---aagcatactaaaaaca s micMur1.scaffold_9962 10919 84 - 51117 TCCTACTC--AATTA-AAaaaata-cacagaatacgtaggaatatac-ttgataa---atatataagacccatttg---aaacaaactaaaaaca i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 204112 73 - 134511895 TCCAACTCATAATTG-AAAAAAAGTCataaaatatgtaggaatat------------------caagatccatatg---aagcatactaaaaaca i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 231132 72 - 136387465 tcctactcataaatg-aaaaaata-cataaaatatgtgggaatat------------------caagacccatatg---aagcatactaaaaaca i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1909 72 + 4092 TCCGACTCATAATTG-ACAAAATA-Cataaaatatgtaggaatat------------------caagacccatatg---aagcatactaaaaaca i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 194604 71 - 135371336 TCCGACTCATAATTG-ACAAAATA-Cataaaatatgtaggaatat------------------caagacccatat----aagcatactaaaaaca i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 6171 90 + 30858 ATCTACGCATAACAGAAAAAAATA-Cataaaacatgcagaaatatac-ttgacaagaaatatgtaaggttcatagg---aaacaaactaaaaaca i turTru1.scaffold_102261 I 6 C 0 s bosTau4.chr17 29974419 91 - 76506943 AAATATGTATATCAGGAAAAAATA-CATAAAATAT--AGAAATATAC-ATGACAAGAAATGTATACAGTTCATAGGCTAAAGCAAACTAAAACCA i bosTau4.chr17 I 3 C 0 s equCab2.chr8 64149148 90 - 94057673 GTCTTCTCATAACAGAAAAAAACA-CATAAAATATGCAGGAATATAC-TTGACAAGAAATATGAAAGATCCATATG---AAACAAACTAAAAATA i equCab2.chr8 I 6 I 257 s canFam2.chr26 3194965 90 + 42029645 atctactc-taaaagaaaaaaaca-tagaaattacgcaggaatataagtggacaagaggcatgtaagacccatatg---aaacaaactaaaacca i canFam2.chr26 I 6 C 0 s loxAfr3.scaffold_113 111468 83 - 3408981 TCCTACTCATA-----GTaaaata-tacaaaatatacagatatac---ttgataagaaatatgcaaaacccatatg---atacaaactaaaaaca i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=383904.000000 s hg19.chrUn_gl000223 67320 135 + 180455 ccaatgagaactataaaaatagaattaaagaaatttataattcgattttattctgggataggaagacttcagattgtgaagataatttgacctcaaatgatttatataactcat-cgactccaatcagaatctcaA s micMur1.scaffold_9962 11003 136 - 51117 tcaatgaggactataaaaacagaattacataaatctataattttaccttattctgggatagaaagacttcatattataaagataatgtgaccccaaatgatttttatagttaattcaactccaatcataatctcaa i micMur1.scaffold_9962 C 0 I 19 s rheMac2.chr11 204185 136 - 134511895 ccaatgaaaactataaaaatagaattaaagaaatttataattcgattttattttgggataggaagacttcatattgtgaaggtaatttgacctcaaatgatttatataactcgttcaactccactcagaatctcaA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 231204 136 - 136387465 ccagtgagaactataaaaatagaattaaagaaatttataattcgattttattctgggataggaagacttcatattgcgaagataatttgacctcaaatgatttatataactaattcaactccaatcagaatctcaA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 1981 136 + 4092 ccaatgagaactataaaaatagaattaaagaaatttataattcgattttattctgggataggaagacttcagattgtgaagataatttgacctcaaatgatttatacaactcattcgactccaatcagaatctcaA i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 194675 136 - 135371336 ccaatgagaactataaaaacagaattaaagaaatttataattcgattttattctgggataggaagacttcagattgtgaagataatttgacctcaaatgatttatgtaactcattcgactccaatcagaatctcaA i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 6261 134 + 30858 ccaatgaggactgtaagaagagacttcgt-acatgcacaatttggtcttgtcctgggacagaaagatttcatacactaaaaagaagtcagccccgaatgatttatatcttt-agtcaactccaatcacaatttcaa i turTru1.scaffold_102261 C 0 I 20 s bosTau4.chr17 29974510 120 - 76506943 CCGATGGGGACTATAAAAATAGACTTCCT--CACACACAAATTGGTCT--TTCTAGGACAGaaagacttcat-----------aattcagccctgaatgatttatattttt-agtcaattccaatcacaatctcaa i bosTau4.chr17 C 0 I 20 s equCab2.chr8 64149495 134 - 94057673 CCAACGGGAACTATGAAAATAGACTTCAC-ACATGTACAGTCTGGTCTtgttctggcataggaagacttcacacagtaaagataatttagccccaaatgattcatatcttc-agtcaactccaattacaatgtcaa i equCab2.chr8 I 257 I 16 s canFam2.chr26 3195055 133 + 42029645 ccaacagggactacaaaaataggcttcat-aaatgtataatctggtcttgctcagggatatgaagactt--cacagtggaagtaagttagccccaaatgatttatatctttaagtctactgcaatcatacctggaa i canFam2.chr26 C 0 I 22 s loxAfr3.scaffold_113 111551 136 - 3408981 ccagtgaggattataaaaatagacttaagtaaatgtataatttggtcctgtcctgggagaagaaggcttcatactgaaaagataattcagcccaaaatgagctatatatttaagccaattccaatcataatctcca i loxAfr3.scaffold_113 C 0 I 20 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e tupBel1.scaffold_103331.1-57811 23499 5392 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=156566.000000 s hg19.chrUn_gl000223 67455 55 + 180455 AATTCTAAAGTTTATGTGTAA-GAAAAAAGGTTCAAGAACAATT-CGGACACttttt s panTro2.chr12 194811 55 - 135371336 AATTCTAAAGTTTATGTGTAA-GAAAAAAGGTTCAAGAACAATT-CGGACACttttt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2117 55 + 4092 AATTCTAAAGTTTATGTGTAA-GAAAAAAGGTTCAAGAACAATT-CGGACACttttt i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 231340 55 - 136387465 AATTCTAAAGTTTATGTGTAA-GAAAAAAGGTTCAAGAACAATT-CGGACACttttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 204321 55 - 134511895 AATTCTGAAGTTTACGTGTAA-GGAAAAAGGTTCAAGAACAGTT-TGAACACttttt i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 11158 43 - 51117 aattttaaagtttatctgtaa-gaaaaatggttcaggatcagtg------------- i micMur1.scaffold_9962 I 19 C 0 s tupBel1.scaffold_103331.1-57811 28891 43 - 57811 AATTCTACCTTTCATTTGTAA-GAAAAAAGGCTCAGAAGCAGCT------------- i tupBel1.scaffold_103331.1-57811 I 5392 I 9 s turTru1.scaffold_102261 6415 43 + 30858 aattctaaagttcacctggaa-aaaaaaaggttcaggaacagct------------- i turTru1.scaffold_102261 I 20 C 0 s bosTau4.chr17 29974650 53 - 76506943 aattctaaagttcacctggaagaaaaaaaggtacaggaacagctttggacatt---- i bosTau4.chr17 I 20 C 0 s equCab2.chr8 64149645 55 - 94057673 aattctaaagtttacctagaa-ggaaaaagtttcagaaacagct-tggacacttttg i equCab2.chr8 I 16 I 467 s canFam2.chr26 3195210 50 + 42029645 aattctaagattcatctggaa-aaaaaaagtttcaagaatagct-ttgacac----- i canFam2.chr26 I 22 I 177 s loxAfr3.scaffold_113 111707 50 - 3408981 aattctgaagtccatttggaa-ggaaaaa----caggagcaagt-agtacatttct- i loxAfr3.scaffold_113 I 20 I 1160 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=125386.000000 s hg19.chrUn_gl000223 67510 154 + 180455 ttttttttttgacagggtcttactgtgttgtccaggctgaagtgcaatggcataaccatagctcactgcagccctgaactcctgggctcaagtgatcctcctacctcaacctacagagtagctggggctacaggcatgccctaccacaccgggc s panTro2.chr12 194866 151 - 135371336 ttttttt---gacagggtcttactgtgttgtccaggctgaagtgcaatggcataaccatagctcactgcagccctgaactcctgggctcaagtgatcctcctacctcaacctacagagtagctggggctacaggcatgccctaccacaccgggc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2172 152 + 4092 ttttttt--tgacagggtcttactgtgttgtccaggctgaagtgcaatggcataaccatagctcactgcagccctgaactcctgggctcaagtgatcctcctacctcaacctacagagtagctggggctacaagcatgccctaccacaccgggc i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 231395 152 - 136387465 ttttttt--tgacagggtcttactgtgttgtccaggctgaagtgcaatggcataaccgtagcttactgcagccctgaactcctgggctcaagtgatcctcacacctcaacctacagagtagctggggctacaggcatgccctaccacaccgggc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 204376 140 - 134511895 ttttttttgagacagggtcttactgtgttgtccaggccgaagcgcaatggcataaccatagctcactgcagccctgaactcctgggctcaagtgatcctcccacctccgcctacagagtagctggtgctacaggcATAC--------------C i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11201 0 - 51117 C e tupBel1.scaffold_103331.1-57811 28934 9 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e turTru1.scaffold_102261 6458 0 + 30858 C e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e bosTau4.chr17 29974703 0 - 76506943 C e equCab2.chr8 64149700 467 - 94057673 I e canFam2.chr26 3195260 177 + 42029645 I a score=105668.000000 s hg19.chrUn_gl000223 67664 52 + 180455 CTGGATGCTTTTGGAAATACAAAATAATGAGTGTGAACAGGCCCACTG---TAAT s rheMac2.chr11 204516 52 - 134511895 CTGGACGCTTTTGGAAATACAAAATAATGAATGTGAACAGGCCTACTG---TAAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 231547 52 - 136387465 CTGGATGCTTTTGGAAATACAAAATAATGAGTGTGAACAGGCCCATTG---TAAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2324 52 + 4092 CTGGATGCTTTTGGAAATACAAAATAATGAGTGTGAACACGCCCACTG---TAAT i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 195017 52 - 135371336 CTGGATGCTTTTGGAAATACAAAATAATGAGTATGAACAGGCCCACTG---TAAT i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 6458 51 + 30858 ttggacacttttggaaatacaaaataatgagtgtaaacaggccca-tg---taat i turTru1.scaffold_102261 C 0 I 6 s canFam2.chr26 3195437 31 + 42029645 --------------------AAAATAATCAAGGTGTACACATTCA-TG---TAAC i canFam2.chr26 I 177 I 6 s bosTau4.chr17 29974703 43 - 76506943 --------tttgggaaacacaagataatgagtgtaaataggtcca-tg---taat i bosTau4.chr17 C 0 I 6 s tupBel1.scaffold_103331.1-57811 28943 39 - 57811 ----------TTGCAAATAGAAAACAATGACTGTGAAAAGGCCCAATG---T--- i tupBel1.scaffold_103331.1-57811 I 9 I 356 s micMur1.scaffold_9962 11201 50 - 51117 -tggatacttttggaaataaaaaataatg----tgaacaggaccaatgtaataat i micMur1.scaffold_9962 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e equCab2.chr8 64149700 467 - 94057673 I a score=268117.000000 s hg19.chrUn_gl000223 67716 159 + 180455 ACATAC----AA----ATTATAA--TCATT---ATAACATTTGA-----------CACTGGCTCCAGAGAAGTTAT-----------ACAGATGAAAAAAAGCA-AACTGTCTAAA-TATGCAAGAGTCAG-CATGCAATAAATGTAGCATTTCAAAGCCATCAGTAAAATTAAATTATT---TAATGAAT---ACAA-----GAATA s micMur1.scaffold_9962 11251 161 - 51117 acatattataaa----attataa--taatcaGAAGAACATTTGA-----------CACTGATACCACTTTCATCAT-----------ACAGATG-AAAAATGCATAACTGTCAAAA-TATACAA----CAG-CATGTAATAAA--TAACACTTCAAAGCCACAAGTAAAACTGGATTACT---TAATGaat---agga----ttaaca i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 204568 155 - 134511895 ACatat----aa----attataa--taatt---ataaCATCTGA-----------CAGTGGCTTCAGAGAGGTTAC-----------ACAGATG-AAAAAAGCAGAACTGTC-----TATGCCAGAGTCAG-CATGTAATAGATGTAGCACTTCAAAGCCATGAGTAAAACTAAATTATT---TAATGAAT---ACGA-----GAATA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 231599 161 - 136387465 ACATAT----AA----ATTATAA--TCATT---ATAACATTTGA-----------CACTGGCTCCAGAGAGGTTAT-----------ACAGATGAAAAAAAGCAGAACTGTCTAAATTATGCAAGAGTCAG-CATGTAATAAATGTAGCATTTCAAAGCCATCAGTAAAACTAAATTATT---TAATGAAT---ACGA-----GAATA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2376 160 + 4092 ACATAC----AA----ATTATAA--TCATT---ATAACATTTGA-----------CACTGGCTCCAGAGAAGTTAT-----------ACAGATGAAAAAAAGCAGAACTGTCTAAA-TATGCAAGAGTCAG-CAGGTAATAAATGTAGCATTTCAAAGCCATCAGTAACACTAAATTATT---TAATGAAT---ACAA-----GAATA i gorGor1.Supercontig_0070003 C 0 I 12 s panTro2.chr12 195069 160 - 135371336 ACATAC----AA----ATTATAA--TCATT---ATAACATTTGA-----------CACTGGCTCCAGAGAAGTTAT-----------ACAGATGAAAAAAAGCAGAACTGTCTAAA-TATGCAAGAGTCAG-CATGTAATAAATGTAGCATTTCAAAGCCATCAGTAAAACTAAATTATT---TAATGAAT---ACAA-----GAATA i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 6515 165 + 30858 atatat----tataaaattatatgatcaaa---aaagcatttca-----------cactgcctccagaaaagatat-----------atag-----ataaaGCATAATGTTCCAAA-TATGTCAGGATTTA-CATGCAATAAATGTGGCATTTCACACGCA-AAGTAAAACTGGATTACT---TAATGAAC---AGAAGTGATTAACA i turTru1.scaffold_102261 I 6 C 0 s bosTau4.chr17 29974752 169 - 76506943 atatat----tgtaaaattatat--taaAA---AAAGTATTTCA-----------TACTGTCTCCACAAAAGATTT-----------ACAGCTA-AATAAACCATAACAGCCCCAA-TATGTAAATCTCT--CACGCAATAAATGTGGCACTTCACACCCA-AAGTAAAACCCGATTACT---TAATGAATAGGAGAAGTGATTAACA i bosTau4.chr17 I 6 C 0 s equCab2.chr8 64150167 196 - 94057673 acatac----aaaatagagaaagactggca---cagatgttagctcagggctaatcttccccaccaaaaaaaAAGCAGAAAAGAGCTACAGATG-AATAAAGCATAAAGGTGCAAA-AACATAAGAATTTAGCGTGCAATATATgtggcatttcaacgccatgagtaaaacgggactacttgataataaat---agaagtggttaaca i equCab2.chr8 I 467 C 0 s canFam2.chr26 3195474 137 + 42029645 ATGTAT----TATAAAATCAAATAATTAAA---AACACATTTGA-----------CACCGTCTCCATAAAATAAGT-----------------------------------------------AAAATTTAGTATGCAATAAATATGGCATTTCAAAGTCACAAGTAAAACTGGATTTTT---TAATGAAC---AGAAATGATTAATA i canFam2.chr26 I 6 C 0 s tupBel1.scaffold_103331.1-57811 29338 153 - 57811 ----------------ATCATAA--TAAAA---AGAGTATTTGA-----------CATTGGCTCCAGAAACAATAA-----------ACAGATA-AATGAAGCATAATAGTCCAAA-TAAGCAAGAATTTA-TCCTATGTAAGTGGGGCACTGCAAAGCCCTAAGTAAAACTGGATTACT---TAATGAGT---AAGA---ATTAACA i tupBel1.scaffold_103331.1-57811 I 356 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=67619.000000 s hg19.chrUn_gl000223 67875 35 + 180455 TTTGAAAGAAAATAAACG-----TAGCTATTTCATACA-----------AC s panTro2.chr12 195229 35 - 135371336 TTTGAAAGAAAATAAACG-----TAGCTATTTCATACA-----------AC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 231760 35 - 136387465 TTTGAAAGAAAATAAAGG-----TAGCTATTTCATACA-----------AC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 204723 35 - 134511895 TTTGAAAGAAAATAAAGG-----TAGCTATTTCATACA-----------AC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 11412 40 - 51117 tttgaaagaaaataaacgatagttatctatctcataca-----------ac i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_103331.1-57811 29491 34 - 57811 -TTTAAAGAAAATAAAGA-----TAAGTACTTCATATA-----------AC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s turTru1.scaffold_102261 6680 37 + 30858 CTTGAGAGAAAATAAAGC-TAGTTATCTATCTCATACA------------- i turTru1.scaffold_102261 C 0 I 2232 s bosTau4.chr17 29974921 37 - 76506943 CTTGAAAGAAAATAAAGC-CAGATATCTATCTCATATA------------- i bosTau4.chr17 C 0 I 236 s equCab2.chr8 64150363 48 - 94057673 cctgaaagaaaacagagc-cagttgtctatctcatacattacaacaaac-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3195611 37 + 42029645 CCTAAAGGAAAATAAAGC-TAGTTTTGTATCTCACACA------------- i canFam2.chr26 C 0 I 2130 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I a score=33480.000000 s hg19.chrUn_gl000223 67910 31 + 180455 TACTTTCAG-TGGGTTAAATT---TTAAAATAATG s panTro2.chr12 195264 31 - 135371336 TACTTTCAG-TGGGTTAAATT---TTAAAATAATG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 231795 31 - 136387465 TACTTCCAG-TGGGTTAAATT---TTAAAACAATG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 204758 32 - 134511895 TACTTCCAGATGGATTAAATT---TTAAAATAATG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 11452 31 - 51117 aaagtactt-gggattagaat---ttaaaataaca i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_103331.1-57811 29525 34 - 57811 AAACTCCTT-TCAATTTAATTAGATTACACTAATG i tupBel1.scaffold_103331.1-57811 C 0 I 9371 s bosTau4.chr17 29975194 32 - 76506943 TACTTTCAGAGGGATCAGAAC---TTAAAATAATG i bosTau4.chr17 I 236 C 0 s equCab2.chr8 64150411 32 - 94057673 tactttcagatggactggaat---ttaaaataatg i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e turTru1.scaffold_102261 6717 2232 + 30858 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e canFam2.chr26 3195648 2130 + 42029645 I a score=117749.000000 s hg19.chrUn_gl000223 67941 150 + 180455 GAAACCCT-AAGAATGTCT-----ACAAAAAAAAACCACAGGTGAATGAATATATGTATAATTTGAGGGGAGATTTCGCTACACC--ATACCAAAAGCAAAAGTCACTTAAAAAATT-----TAAA---ACAGTCAATAAATATAACCATTAAAAAATACACggcc s panTro2.chr12 195295 150 - 135371336 GAAACCCT-AAGAATGTCT-----ACCAAAAAAACCCACAGGTGAATGAATATATGTATAATTTGAGGGGAGATTTCACTACACC--ATACCAAAAGCAAAAGTCACTTAAAAAATT-----TAAA---ACAGTCAATAAATGTAACCATTAAAAAATACACggcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 231826 153 - 136387465 GAAACTCTAAAGAATGTCT-AAAAAAAAAAAAAAAACACAGGTGAATGAATATATGTATAACTTGAGGGGAGATTTCGCTACACC--ATACCAAAACCAAAAGTCATTTAAAAAATT-----TAAA-----AGTCAATAAATGTAACCATTAAAAAATACAGggcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 204790 153 - 134511895 GAAACCCT-AAGAATGTCTTAAAAAAAAAAACAAACCACAGGTAAAT---TATATGCATAATTTGAGGGGAGATGTCGCCACACG--ATACAAAAGACAAAAGTAATTTAAAAAACT----GTAAA---ACAGTCAATAAACGTAACCATTAAAAAATACAGggcc i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 11483 138 - 51117 gaaaccat-aataatgcct---------aaagaaaacacaagtgaa----tatctgtataatttggggggagattac---acaca--acacaaaaggcaaaagccat----aacattttcttttaa-----agttagtaaatgtaaccattaaaaaatgtaaaacc i micMur1.scaffold_9962 C 0 I 23385 s bosTau4.chr17 29975226 133 - 76506943 AAAACCAT-GATAGTGCCT---------AAAGAAAACACAAGTGAG----TATTTGTGTAGTTTGGGGGAAAATGTCCCTACACATGCTAC-AAAGGCAAAAGTAA----AAAAATG-----TTACTTAAAAGCCAATAGATTTAACCATTAAAAAA--------- i bosTau4.chr17 C 0 I 1837 s equCab2.chr8 64150443 135 - 94057673 gagaccaa-gacaatccct---------gaagaaaacacaggtgag----tatttgtacaattttggaaagactttccctacatgggatac-aaaggcaaaagccgt---atttgtt-----ttaagaaacagtcaataaacttaaccactagaaaat-------- i equCab2.chr8 C 0 I 2579 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e turTru1.scaffold_102261 6717 2232 + 30858 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e canFam2.chr26 3195648 2130 + 42029645 I a score=19446.000000 s hg19.chrUn_gl000223 68091 36 + 180455 aggaatggtggctcacacctgtaaccccagcgcttt s rheMac2.chr11 204943 36 - 134511895 aggcatggtggctcacacctgtaagcccagcgcttt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 231979 36 - 136387465 aggaatggtggctcacacctgtaaccccagcgcttt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 195445 36 - 135371336 aggaatggtggctcacacctgtaaccccagcgcttt i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e turTru1.scaffold_102261 6717 2232 + 30858 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e bosTau4.chr17 29975359 1837 - 76506943 I e equCab2.chr8 64150578 2579 - 94057673 I e canFam2.chr26 3195648 2130 + 42029645 I a score=24584.000000 s hg19.chrUn_gl000223 68127 57 + 180455 aaaagCCTCCTTCGATAGCGGCAGAGCCAGGCTGCTGGTGGATGCGGTCCAGCAGGG------- s panTro2.chr12 195481 57 - 135371336 aaaagCCTCCTTCGATAGCGGCAGAGCCAGGCTGCTGGTGGATGCGGTCCAGCAGGG------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232015 57 - 136387465 aaaagCCTCCTTCGATAGCGGCAGAGCCAGGCTGCTGGTGGATGCGGTCCAGCAGGG------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 204979 57 - 134511895 aaaagacTCTTTCGACACCGGCAGAGCCAGGCTGCGGGCGGATGCGGTCCAGCAGGG------- i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 29977196 60 - 76506943 AAAATCCTACT--GATAAAAGCAGAGGCAAGCTG--GGTGGAGCCGGGATGGAGGCGAACAATC i bosTau4.chr17 I 1837 I 11 s felCat3.scaffold_2338 4136 23 - 11443 -----------------------------------------AGCCGGGCTACAGGGGCACAGGC i felCat3.scaffold_2338 N 0 I 4 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e turTru1.scaffold_102261 6717 2232 + 30858 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e equCab2.chr8 64150578 2579 - 94057673 I e canFam2.chr26 3195648 2130 + 42029645 I a score=8542.000000 s hg19.chrUn_gl000223 68184 51 + 180455 CAGCCGCTCC----TTAGGGCCACGGCGCGGCAAGCGGGCTGGCCCGAGGTCGAG s panTro2.chr12 195538 51 - 135371336 CAGCCGCTCC----TTAGGGCCACGGCGCGGCAAGCGGGCTGGCCCGCGGTCGAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232072 51 - 136387465 CAGCCGCTCCTTAGTTAGGGCCACGGCTCGGCAACGGGGCTGGCCCGCGGT---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205036 47 - 134511895 CAGCCGCGCC----TCAGGGCCACGGCTCGGCAACGGGGCTGGCCCGCTGT---- i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 8949 30 + 30858 CGGACGCTCC----C---------------------CAACCCGCCGTGGGTCCCG i turTru1.scaffold_102261 I 2232 I 8 s bosTau4.chr17 29977267 42 - 76506943 CGTACACGCC----CAG-------GGTGCCCCCA--CGACTGGCCGTGTGTCCCG i bosTau4.chr17 I 11 I 6 s felCat3.scaffold_2338 4163 45 - 11443 AGTCCCCTCG----CCG----CCCGACGCCTCAA--GGACCAGCTCTGGGCTCAG i felCat3.scaffold_2338 I 4 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e equCab2.chr8 64150578 2579 - 94057673 I e canFam2.chr26 3195648 2130 + 42029645 I a score=10298.000000 s hg19.chrUn_gl000223 68235 152 + 180455 GCTAAACGCGCCCGAGGCTAAACGC-----GCCCGAG------GC-------------TGG----------CGCCT----------------------CCACGCC------------------CGCCT-----------GAAAGGA--CGCCCAGGAGCGGCGCCTCCGGAAAGG-CCGTGC--CCGCCCCACAGCCCAGAATCCGCGCAGCTCC-GCGGCCCACGGCATCT-TCACGACCCGG s panTro2.chr12 195589 152 - 135371336 GCTAAACGCGCCCGAGGCTAAACGC-----GCCCGAG------GC-------------TGG----------CGCCT----------------------CCACGCC------------------CGCCT-----------GAAAGGA--CGCCCAGGAACGGCGCCTCCGGAAAGG-CCGTGC--CCGCCCCACAACCCAGAATCCGCGCAGCTCC-GCGGCCCACGGCATCT-TCACGACCCGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232123 140 - 136387465 ------------CGAGGATAAACGC-----GCACGAG------GC-------------CGG----------CGCCT----------------------CCACGCC------------------CGCCT-----------GAAAGGA--CGCCCAGGAGCGGCGCCTCCGGAAAGG-CCGTGC--CCGCCCCACAGCTCAGAATCCGCGCGGCTCC-GCGGCCCACGGCATCT-TCACGACCCGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205083 146 - 134511895 ------------CGAGGCCGAACGC-----ACGCGAGGCCCACGC-------------CGG----------CGCCT----------------------CCACGCC------------------CGCCT-----------GAAAGGA--CGCCCAGCAGCGGCGCCTCGGGAAAGG-CCGTGC--CCGCCCCACAGCCCAGAACCCGCGCGGCTCC-GCGGCCCACGGCATCT-TCACGAGCCGG i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 8987 170 + 30858 ----------ACCGCGCC----CGCCCAGGGCTCGCG------GC-------------CGGGGACGCGCAAGGACGCGCGTGGGAAGGTACCGCCTTTCCAAGCC------------------GGCCT-----------GGCAGGAGAGGCCCCGGCGCGA----CAAGCACCAG-CCGCGG--CGGACGAAGGGCCT-----CCCCCCGACCCCGGGGGCCACCGGTGCCCACCGCACCCCGG i turTru1.scaffold_102261 I 8 C 0 s bosTau4.chr17 29977315 141 - 76506943 ------------------------------GCGCGCG------GC-------------CGG----------GCACGCGCGTGGG-AGACACCACCTGTACGAGCC------------------GGTCT-----------GGAAGGAAACGTCAAGATGC------TCAGCACTGG-CCGCGG--CGGAGGAAGGGCCT-----CCCCCCACTGCTAAAGCCCACCGGTGCCTACCGCAACCCAG i bosTau4.chr17 I 6 C 0 s canFam2.chr26 3197778 160 + 42029645 GCCCAGAGCAGCCGCGGC----CGC-----ACACGCC------GCTAACACCCA----CGG----------TGGC---GACAGGGCGG----------CCGGGCC------------GCAGGGGGCC------------GCAGGGAAGGGGCC-----C------CCAAGGCCGACCCGCGGCCCCTACGCACCGCCC-----CCCCACGACCGCCACAGCCCGGAGCGGGGCCCAGAGGCC-- i canFam2.chr26 I 2130 C 0 s felCat3.scaffold_2338 4208 182 - 11443 ----------GCCGGGAC----CAC-----CCACGCA------GC---CCCCCGCGTCCGG----------GGACTCAGGCGGGGAGG----------CACGGCCCTCACAACCCCAGCGGAAAGCCCCCCCCCCCCCGCCAAGTAAGAGCCCAGAggc------ccggggccgg-cggcggccccggccccgcgccc-----cTGCACTCACCCGGCGCCCCGCCGCGCTGCCTGCGAACC-- i felCat3.scaffold_2338 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 227532 3534 + 667635 I e equCab2.chr8 64150578 2579 - 94057673 I a score=38685.000000 s hg19.chrUn_gl000223 68387 114 + 180455 CCCAGCCCCAACCCGCCCCAGACCCGCATCCGCGCGCGGACGCCCAGGGCCTTGAAGCCGAAGC----TCCCCGCGGCCACTCCCGCGCGCCTCCCCCGCCATTCC-CGGAGCCCCCAG s rheMac2.chr11 205229 114 - 134511895 CCCAGCCCCACCCCGCCCCAGCCCCGAGTCCGCGCGCGGACGTCCAGGACCTTGAAGCCGAAGC----CCTCCGCGGCCACTCCCGCGCGCCTCCCCCGCCATCCC-TGGAGCCCCCAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 232263 98 - 136387465 CCCAGC----------------CCCGCATCCGCGCGCGGACGTCCAGGGCCTTGAAGCCGAAGC----TCCCCGCGGCCACTCCCGCGCGACTCCCCCGTCATCCC-CGGAGCCCCCAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 195741 114 - 135371336 CCCAGCCCCAACCCGCCCCAGACCCGCATCCGCGCGCGGACGCCCAGGGCCTTGAAGCCGAAGC----TCCCCGCGGCCACTCCCGCGCGCCTCCCCCGCCATTCC-CGGAGCCCCCAG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 231066 82 + 667635 CCGAACCCCAACCCGC-----ACCCGCAACCGGACAAGCTCACCAGCGGGATGGAAGACAAAGA----CCCGGACAGCCGCGTGCGCGCGC---------------------------- i cavPor3.scaffold_248 I 3534 I 43780 s turTru1.scaffold_102261 9157 101 + 30858 -------------CCGCGGAGACCCCGGCCCAAGCGCTGACGCCC----ACTGGCGGCCCTGGCACGACCCCCAGCCCCTCCCCCGCGGGCTCCCTCAGCCCCAGC-CGCCCCCCCCAC i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29977456 101 - 76506943 -------------CCACTGAGATCCAGGCCGAAATGCGGACGCCC----ACTTGCAGCCCTAGCACGACCCCCAACCCGGCCCCCACGAGCCCTCTCAGCCCCCGC-CGCCCGCCCCAC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3197938 93 + 42029645 ----------------TCGGGACTGGGGGGCAGGGGGAGGGGCTTCCGGACCCGC-GCCGACACCCCGCCCCC-CCGAGATCCCCGCACGCC-------CCTCAAC-CGCCCGCCCGGG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_2338 4390 95 - 11443 ----------------CCGAGCCCCGCGCCGACGCCCACAGGCCTCCAAGCCTGCGGCCCAGACACGACCGCC-GAGTCCTTCCCGCGAGCC-------CCGCCACACGTAACCCCAAC i felCat3.scaffold_2338 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 18475 2096 + 26550 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e equCab2.chr8 64150578 2579 - 94057673 I a score=64229.000000 s hg19.chrUn_gl000223 68501 169 + 180455 ----CGCCGGGCCCGCAATAAACTCACTGAACTCACAAAAG----------------ACGCCGCCG-CC--GAGTcgcgcccgcgc------gcccgcggccTCGCGATCACGTGACACCGC---------------------------CCGTCCCCCGTGTCCCGCGCACGCGCCCA------AACCGTCGGCCTTTGTGCGCTCCCGG-------GCGGC--TCCGAA-CGGGCCGGGA s panTro2.chr12 195855 175 - 135371336 ----CGCCGGGCCCGCAATAAACTCACTGAACTCACAAAAG----------------ACGCCGCCG-CC--GAGTcgcgcccgcgcccgcgcgcccgcggccTCGCGATCACGTGACACCGC---------------------------CCGTCCCTCGTGTCCCGCGCACGCGCCCA------AACCGTCGGCCTTTGTGCGCTCCCGG-------GCGGC--TCCGAA-CGGGCCGGGA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232361 174 - 136387465 ----CGCCCGGCCCGCAATAAACGCACTGAACTCACAAAAG----------------ACGCCGCCG-CC--GAGTCGCTcccgcgcccgcgcgcccgcggccccgcgATCACGTGACACCAC---------------------------CCGTCCC-CGTGTCCCGCGCACGCGCCCA------AGCCTTCGGCCTTTGTGCGCTCCCGG-------GCGGC--TCCGAA-CGGGCCGGGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205343 172 - 134511895 ----CGCCGGCCCCGCATTAAACGCACTAAACTCACAAAAG----------------ACGCCGCCG-CC--GAGTCGCGCTCGAGCACGCGCGCCCGCGGCCCCGCGATCACGTGATgccgc---------------------------ccggtcc-cgcgccccgcgcacgcgccgg------agccgccggccTTTGTGCGCTCCC---------GCGGC--TCCGAA-CGGGCCGGGA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 20571 148 + 26550 ----CGCCCCGCCCACAACTAGCTCACCGACCACAGCACCG----------------ACACCCCGA-CCAGGAGTCGCGCT---------GCGCCC---GCCTCGGG--------------------------------------------GACCC-----TGCCTTGCACGCGTT--------AGCCAGCGGCTTCTGGGCTCCCAAGGCCCACCTGCGGG--TCCCAA-CTGGCTGGAC i otoGar1.scaffold_101698.1-26550 I 2096 C 0 s turTru1.scaffold_102261 9258 131 + 30858 AGGAATCCAGCCCCG-------------GAACCTGCAAAAA----------------AGGCCTCGGAACCACGGACGCGC-----------------GGGACCGGGACCCACGTGA---------------------------------CCGCCCC---------------GCCCCCA--------------GCCTTTGCGCGACCCGGGCGGGCCCGCGGGA-TCCCAA-AGGCCCGGAG i turTru1.scaffold_102261 C 0 I 1 s bosTau4.chr17 29977557 137 - 76506943 AGGGATCCAGCCCCG-------------GAACCTGCAAAAA----------------ATGCCTCGG-ACCACGGACGCGCC-----------GGACGGGGACCTGGACCCAAGTGA---------------------------------CCGCCCC---------------GCCCCCG--------------GGCTTTGCGCGACCCGGGCAGATCCGCGGGATTCCCGA-CGGCCTGGAG i bosTau4.chr17 C 0 I 1 s canFam2.chr26 3198031 175 + 42029645 GGAAA-CCCGACCCC-------------GAACTCGCAGCAACGCCGGGACCCACCCCAGGCCTCCG-CCGTCGGCCGCGC-----------------AGGCCCAGAAGACACGTGACCCGGCCCA------------------------GCGGCCCCCG---CCCTCACG-GCCTCCA-----GGTCCACCGGCCTCCGTGCGCTGCCTGGGGGTCCGCGGAA-TCCGGATCCGACTGCGG i canFam2.chr26 C 0 I 1 s felCat3.scaffold_2338 4485 201 - 11443 GG-----CCGGCCCG-------------GACTCCGCAAAAAACCCGGCACCGACCGCAGGCCTCAG-TCTTCGGACGCGC-----------------AGGCCCGGGAACCACGTGACCCGCCCCGCGCCCCCCCAGACTCACCGAcgccccgccccccg---cccgcacgcgcccccggccACGACCCACTGGCCTCCGTGCTGAGCCAGCGGGCCCACGAAA-TCCCGACCGGGCTgcgg i felCat3.scaffold_2338 C 0 I 1 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e equCab2.chr8 64150578 2579 - 94057673 I a score=99229.000000 s hg19.chrUn_gl000223 68670 93 + 180455 C------GAGTC--------------------GGGGACTGCACACGCGCACACTCGCACGCGCGC--ACACGCGTACACTCCCCTCTCACGTGGCAGCGAAGGACAAAGAGGAAGAACGGG s canFam2.chr26 3198207 90 + 42029645 ------GGAGCCG-------------------GGGGGGCGCGCACGGGCACGCGGGCACGCGCGCGGA-ACGCCCACACTCGCCTCTCGCTTGGAGGCGAAGGACAAAG-----AAGGGCG i canFam2.chr26 I 1 C 0 s felCat3.scaffold_2338 4687 93 - 11443 ------ggggcc--------------------cggggccgcgcacgggtacgcgggcgcgcgcgcggAGACGCCCACACTCGCCTCTCGCTTGGCGACGAAGGACAAAGAG--AAGGGGCG i felCat3.scaffold_2338 I 1 C 0 s equCab2.chr8 64153157 108 - 94057673 ------GGAGACACGGTACTCCCCCCCACGCCGGGGGACGTGT----GTTCGCGTGTACACTCGGGGCGAGGCAAACTCT-ACTTTTCGCGTTGCGGCGAGGGACAAAGAG--CAAGGGGA i equCab2.chr8 I 2579 C 0 s bosTau4.chr17 29977695 84 - 76506943 ------CTAGCC--------------------GGGGAAC-------AGCGCGCGCACGAGCACGCGGACACTTGCACAGTGGCCTCTCGCGTGGTGGCGAAGGACAAAGA----GAGGGTC i bosTau4.chr17 I 1 C 0 s turTru1.scaffold_102261 9390 83 + 30858 ------TGGGCT--------------------GGGGGAC-----CGCGCGCGCGCACGAGCACGCGGACACGCGCCCACTGGCCTCTCACGTGGCGGT---GGACAAAGA----GAAGGGC i turTru1.scaffold_102261 I 1 C 0 s otoGar1.scaffold_101698.1-26550 20719 97 + 26550 CGGACCTGACTC--------------------CGGCACTG-GCGCGAGCGTGCCAGGGGACCCGC--ACACAAACCGGTTCCCCTTTCACCTGGCAGCCAAACACAAAG-GGCAAAAAAGC i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 205515 93 - 134511895 C------GAGTA--------------------GGGGACTGCAGACGAGCACACTCGCACGCGCGC--ACACGCGCACACTCCCCTCTCACGTGGCAGCGAAGGACAAAGAGGAAGAAAGGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 232535 93 - 136387465 C------GAGTC--------------------GGGGACTGCACACGCGCACACTTGCACGCGCGC--ACACGCGTACACTCCGCTCTCATGTGGCAGCGAAGGACAAAGAGGAAGAAAGGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 196030 93 - 135371336 C------GAGTC--------------------GGGGACTGCACACGCGCACACTCGCACGCGCGC--ACACGCGTACACTCCCCTCTCACGTGGCAGCGAAGGACAAAGAGGAAGAACGGG i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 111757 1160 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I a score=38497.000000 s hg19.chrUn_gl000223 68763 50 + 180455 CCACCTG-CAAGCATT----ACCAAGAG--T-GCATG-TGCGCATGCGCG-AAGGAAGGA--- s panTro2.chr12 196123 50 - 135371336 CCACCTG-CAAGCATT----ACCACGAG--T-GCATG-TGCGCATGCGCG-AAGGACGGA--- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232628 50 - 136387465 CCACCTG-CAAGCTTT----GTCACGAG--T-ACATG-TGCGCATGCGCG-AAGGACGGA--- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205608 50 - 134511895 CCGCCAG-CAAGCTTT----GCCACGAG--T-GCATA-TGCGCATGCGCG-AAGGACGGA--- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 20816 53 + 26550 CGATCCG-AAAGTGAA----GCCGTGAGAAT-GCGCG-TGCGCGTGCGCGTGAGGACGCC--- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s turTru1.scaffold_102261 9473 39 + 30858 CAAACCT-------------GCTG------C-GTGCGCTGCGCGTGCGCG-AAGGGGAGG--- i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29977779 40 - 76506943 CAAGCCG-------------GCTG------CAGAGGGTTGCGCGTGCGCG-CGGGAAAGG--- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64153265 51 - 94057673 CAAACCGAAAAGCCTTCGGGGCTG------T-TTGAG-TGCGCTTGCGCG-AGAGGAGGG--- i equCab2.chr8 C 0 I 1 s felCat3.scaffold_2338 4780 56 - 11443 CAACCCG-AAAGCGTCGGTGGCCGTGCGAGT-GCGAG-TACGCGTGCGCG-AGAGAAAGA--- i felCat3.scaffold_2338 C 0 I 62 s canFam2.chr26 3198297 56 + 42029645 CAACCCG-AGGGCGTCAGTGGCCGTGCCGCT-GCGAG-TACGCGTGCGCG-AGAGAAAGA--- i canFam2.chr26 C 0 I 551 s loxAfr3.scaffold_113 112917 52 - 3408981 CCATCCG-CGAGCTTCGGCGGCCG------G-GCA-G-TGCGCCTGCGCT-GAGCAGCAAGCG i loxAfr3.scaffold_113 I 1160 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I a score=50077.000000 s hg19.chrUn_gl000223 68813 34 + 180455 G--------CC-CCGCGAACTCAACTT-CCCACAGTGCCCCGCG s panTro2.chr12 196173 34 - 135371336 G--------CC-CCGCGAACTCAACTT-CCCACGGTGCCCCGGC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232678 42 - 136387465 GCGCGCCCCCC-CCGCGAACTCAACTT-CCCACGGTGCCCCGCG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205658 35 - 134511895 G--------CCACCGCGAACTCAACTT-CCCAGGGTGCCCCGCA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 20869 34 + 26550 G--------CT-TCCAGGACTACATTG-CCCAGGGTGCTCAGCG i otoGar1.scaffold_101698.1-26550 C 0 I 14 s turTru1.scaffold_102261 9512 34 + 30858 --------AGC-CTCCGAACTACACTT-CCCAGGAGGCTCCGCG i turTru1.scaffold_102261 C 0 I 188 s bosTau4.chr17 29977819 34 - 76506943 --------CCC-TGCCGAACTACACTT-CCCAGGAGGCCCTGGG i bosTau4.chr17 C 0 I 3 s equCab2.chr8 64153317 34 - 94057673 ---------GC-CGCCGAACTACATTTCCCCAGGAGGCTCCGCG i equCab2.chr8 I 1 I 20 s felCat3.scaffold_2338 4898 33 - 11443 ---------GC-CTTTGTACTACATTT-CCCAGAAGGATCCGCG i felCat3.scaffold_2338 I 62 I 20 s loxAfr3.scaffold_113 112969 34 - 3408981 --------GCC-CCTCAAGCCCCACTT-CCCAGGGTGCTGCGCG i loxAfr3.scaffold_113 C 0 I 19 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e canFam2.chr26 3198353 551 + 42029645 I a score=38407.000000 s hg19.chrUn_gl000223 68847 28 + 180455 TCCGGAAGTGCCTGTCGCTTGGAGAC--GG s panTro2.chr12 196207 28 - 135371336 GCCGGAAGTGCCTGTCGCTTGGAGAC--GC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232720 28 - 136387465 TCCGGAAGTGCCTGTCGCCTGGAGAC--GC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205693 28 - 134511895 TCCGGAAGTGCCTGTCGCCTGGAGAC--GC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 20917 30 + 26550 CCTAGCAACACTGGTCGCCTAGAGACGAGC i otoGar1.scaffold_101698.1-26550 I 14 C 0 s bosTau4.chr17 29977856 26 - 76506943 CGCAGCGTCAGGAGTCGCT--GGAAC--GC i bosTau4.chr17 I 3 I 9 s equCab2.chr8 64153371 28 - 94057673 CCTAGGAACGCTGGTTGCCTAGAGAC--GC i equCab2.chr8 I 20 I 3 s felCat3.scaffold_2338 4951 28 - 11443 CTGAGGAGCGCTGGTTGCCTAGAGAC--GC i felCat3.scaffold_2338 I 20 I 3 s loxAfr3.scaffold_113 113022 27 - 3408981 CCCGGAAACGTTGGTCGCCTAGAGAC--G- i loxAfr3.scaffold_113 I 19 I 1351 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 9546 188 + 30858 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e canFam2.chr26 3198353 551 + 42029645 I a score=12720.000000 s hg19.chrUn_gl000223 68875 76 + 180455 AGTGACTCCAAACGGGCTCA-----------------CACGGTTTTCTGAGAAACATAAA------------GG---------------------GAAACCGAATCCACCAATATATAT------------ATATAtt s panTro2.chr12 196235 76 - 135371336 AGTGACTCCAAACGGGCTCA-----------------CACGGTTTTCTGAGAAACATAAA------------GG---------------------GAAACCGAATCCACCAATATATAT------------ATATAtt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232748 71 - 136387465 AGTCACGCCAAACGGGCTCA-----------------CAGGGTTTTCTGAGAAACGTAAA------------GG---------------------GAAACCGAATCCACCAATAt-----------------tttttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205721 64 - 134511895 AGTGACGCCAAACTGGCTCA-----------------CACGGTTTTTTGAGAAACATGAA------------GG---------------------GAAACCGAATCCACCAATA------------------------ i rheMac2.chr11 C 0 I 30 s otoGar1.scaffold_101698.1-26550 20947 90 + 26550 GTGGACCTC-----TGCCCA-----------------AAG-----TCTAAGAAACATAAAAGGGAAAAAAGTAG---------------------GAAACCAAATCCataaaaaaaaattaaaaattaaaaaaaaatt i otoGar1.scaffold_101698.1-26550 C 0 C 0 s equCab2.chr8 64153402 101 - 94057673 GATGGCTGC----CAGCCCAGGGGCGATTTACAGGTACGCGCCTTTGGGAGAAAGGTAGA------------GGATTCTGGTTTTTAAAGACTAGGAATCCAAATCCATCAGTACGT--------------------- i equCab2.chr8 I 3 I 15 s felCat3.scaffold_2338 4982 66 - 11443 GGCGACCGC----GCGCCCA-GACCGAGTTGCGTGAACACGCTTTTGGGAAAAACGTAAA------------AG-------------------------------------------AT------------CTCGATT i felCat3.scaffold_2338 I 3 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 9546 188 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29977882 9 - 76506943 I e canFam2.chr26 3198353 551 + 42029645 I a score=39721.000000 s hg19.chrUn_gl000223 68951 69 + 180455 ttcttgagacggcgt--------ctcgctctgtcac---ccaggctggagtgcagtggcgtgatctcggctcactgcaaa s panTro2.chr12 196311 69 - 135371336 tttttgagacggcgt--------ctcgctctgtcac---ccaggctggagtgcagtggcgtgatctcggctcactgcaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 232819 69 - 136387465 tttttgagacggagt--------ctcgctctgtcgc---ccagcctggagtgcagtggcgtgatctcggcacactgcaag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205815 69 - 134511895 tttttgagacggagt--------ctcgctctgtcgc---ccaggctggagtgcagtggcgcgatctcggcccactgcaac i rheMac2.chr11 I 30 C 0 s otoGar1.scaffold_101698.1-26550 21037 64 + 26550 tttttgagacagc----------ctcaagctgtcgc---cctgggtagagtgccgtgcc---atcacagctcacattaac i otoGar1.scaffold_101698.1-26550 C 0 C 0 s felCat3.scaffold_2338 5048 62 - 11443 -----TAGGCggcgcttaggtggctcactcggttatgcgtctgactgaggctcag-gttttgatctca------------ i felCat3.scaffold_2338 C 0 I 82 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e gorGor1.Supercontig_0070003 2536 12 + 4092 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 9546 188 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29977882 9 - 76506943 I e equCab2.chr8 64153503 15 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=94085.000000 s hg19.chrUn_gl000223 69020 81 + 180455 ctccgcctcccgggttgacgccattcttctgcctcagcctcccgagtagctgggactacaggcgcccgccgccacgcccgg s panTro2.chr12 196380 81 - 135371336 ctccgcctcccgggttgacgccattcttctgcctcagcctcccgagtagctgggactacaggcgcccgccgccacgcccgg i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2548 81 + 4092 ctccgcctcccgggttgacgccattcttctgcctcagcctcccgagtagctggtactacaggcgcccgccgccacgcccgg i gorGor1.Supercontig_0070003 I 12 C 0 s ponAbe2.chr12 232888 81 - 136387465 ctccacctcccgggttgacgccattctcctgccccagcctcccgagtagctgggactgtaggcgcccgccgccacgcccgg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 205884 81 - 134511895 ctccgcctcccgggttcaagcaattctgctgcctcagcctctcgagtagctgggactacaggctcccgccgccacgcccgg i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 21101 81 + 26550 ctctaactcctaggctcaagcgattctcctgcgttggcctcccaagtagccgggactacaggcgcatgccacaacgcctgg i otoGar1.scaffold_101698.1-26550 C 0 I 315 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5110 82 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 9546 188 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29977882 9 - 76506943 I e equCab2.chr8 64153503 15 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=62068.000000 s hg19.chrUn_gl000223 69101 61 + 180455 ctaatttttttgtattttagtagagacggggagtcaccgtgttgcccaggctggtcgcgaa s otoGar1.scaffold_101698.1-26550 21497 58 + 26550 ctaatttttctat-ttttagtagagatgtgatattgc--tcttgctcaggctggtctcaaa i otoGar1.scaffold_101698.1-26550 I 315 C 0 s rheMac2.chr11 205965 60 - 134511895 ctaa-ttttttgtattttagtagagacggggtttcaccgtgttgcccaggctggtctcgaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 232969 60 - 136387465 ctaa-ttttttgtattttagtagagacggggagtcaccgtgttgcccaggctggtctcgaa i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2629 61 + 4092 ctaatttttttgtattttagtagagacagggagtcaccgtgttgccagggctggtcgcgaa i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 196461 61 - 135371336 ctaatttttttgtattttagtagagacggggagtcaccgtgttgcccaggctggtcgcgaa i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5110 82 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 9546 188 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29977882 9 - 76506943 I e equCab2.chr8 64153503 15 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=86583.000000 s hg19.chrUn_gl000223 69162 83 + 180455 ctcctgagctcaggcaatccgcccgccttggcctc---------ccaaagtgct---------------aggattacaggcgtgagccaccgcg---cccggccCACCAA s panTro2.chr12 196522 83 - 135371336 ctcctgagctcaggcaatccgcccgccttggcctc---------ccaaagtgct---------------aggatcacaggcgtgagccaccgcg---cccggccCACCAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2690 83 + 4092 ctcctgagctcaggcagtccgcccgccttggcctc---------ccaaagtgct---------------aggattacaggcgtgagccaccgcg---cccggccCACCAA i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233029 83 - 136387465 ctcctgagctcaggcaatccgcccgcctcggcctc---------ccaaagcgca---------------aggattacaggcgtgagccaccgcg---cccggccCACCAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 206025 83 - 134511895 cttttgagctcaggcaatccgcccgcctcggcctc---------ccaaagtgct---------------aagattacaggcgtgagccacctcg---cccggccCACCAA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 21555 67 + 26550 ctgctgagttcaagcaatccacccacct-----------------cagagtgct---------------agaattacaggcgtacgccaccttg---cctgg-------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s felCat3.scaffold_2338 5192 109 - 11443 ctcccctgctcacgctctttgtctctctctgtctcaaaaagaaacaaaaacattattaaaaaaaaaaAAAAGATTAC-GATTTGAAACACTGGGAACCCAAATCTATCAA i felCat3.scaffold_2338 I 82 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 9546 188 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29977882 9 - 76506943 I e equCab2.chr8 64153503 15 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=4534.000000 s hg19.chrUn_gl000223 69245 23 + 180455 TACT---------------CAATTGGTTT--GACTTCAGT s equCab2.chr8 64153518 21 - 94057673 -------------------CAATTGGCTTAAGAATCCAAT i equCab2.chr8 I 15 C 0 s bosTau4.chr17 29977891 1 - 76506943 ---------------------------------------T i bosTau4.chr17 I 9 C 0 s felCat3.scaffold_2338 5301 40 - 11443 TACATTAAAAAAGAAGAGACAATTGGTTTAAGAATCCAAC i felCat3.scaffold_2338 C 0 C 0 s turTru1.scaffold_102261 9734 25 + 30858 TAGA---------------GAATTGGCTTAATAATTCAAT i turTru1.scaffold_102261 I 188 C 0 s otoGar1.scaffold_101698.1-26550 21622 2 + 26550 --ct------------------------------------ i otoGar1.scaffold_101698.1-26550 C 0 C 0 s rheMac2.chr11 206108 32 - 134511895 TACTTTAAAAAGA------CAATTGGTTT--GACTTCAGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 233112 23 - 136387465 TACT---------------CAATTGGTTT--GACTTCAGT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2773 23 + 4092 TACT---------------CAATTGGTTT--GACTTCAGT i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 196605 23 - 135371336 TACT---------------CAATTGGTTT--GACTTCAGT i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 60406 4845 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e canFam2.chr26 3198353 551 + 42029645 I a score=186652.000000 s hg19.chrUn_gl000223 69268 166 + 180455 TGAGGAAACCAGaaaaaattta--aatatatttatGGAAAGAAGGTAAGAATTAAC---A---G-A-----AAAAAGTAAAGTTGATCCATAACTG--GAGTCGTAGGG-AGAATTATAGGTAAGTCAC-----------GATGCTTATGACAGCAAGATGGGGCCGGGG-------------AGATGG--------------AGGAGAG----AGA-----------------TGAAAAAA s panTro2.chr12 196628 175 - 135371336 TGAGGAAACCAGaaaaaattta--aatatatttatGGAAAGAAGGTAAAAATTAAC---A---G-A-----AAAAAGTAAAGTTGATCCATAACTG--GAGTCGTAGGG-AGAATTATAGGTAAGTCAC-----------GATGCTTATGACAGCAAGATGGGGCCGGGG-------------AGATGG--------------AGGAGAG----AGAG--------GAGAGAGATGAAAAAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2796 175 + 4092 TGAGGAAACCAGaaaaaattta--aatatatttatGGAAAGAAGGTAAGAATTAAC---A---G-A-----AAAAAGTAAAGTTGATCCATAACTG--GAGTCGTAGGG-AGAATTATAGGTAAGTCAC-----------GATGCTTATGACAGCAAGATGGGGCCGGGG-------------AGATGG--------------AGGAGAG----AGAG--------GAGAGAGATGAAAAAA i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233135 175 - 136387465 TGAGGAAACCAGAAAAAACTTA--AATATATTTATGGAAAGAAGGTAAGAATTAAC---A---G-A-----AAAAAGTAAAGTTGATCCATAACTC--GAGTCGTAGGG-AGAATTATAGGTAAGTCAC-----------GGTGCTTATGACAGCGAGATGGGGCCGGGG-------------AGATGG--------------AGGAGAG----AGAG--------GAGAGAGATGAAAAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 206140 172 - 134511895 TGAGGAAACCACAAAAAAAATA--AATATATTTTCGGAAAGAAGCTAAGAATTAAC---A---GAA-----AAAAAGTAAAGCTGATCCATAACTC--GAGTGGTAGGG-AGAATTATAGGTAAGTCAC-----------GATGCTTATGAAAGAGAGATGGCGCCGGGG-------------AGATGG--------------AGGAGAG----------------GAGAGAGATGAAAAAA i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_101698.1-26550 21624 126 + 26550 ---------CAGAAAAAATTTA--AATACATTCATGGAAAGCAAGTAGAAATTAACCAAA---G-A-----GAAAAATGAAGCTTATTCACAACTGGAGAGTTGGGGGG-AAAGTCCCAGACAAG--AC-----------GCTGCACCCAACACTGACAC---------------------------------------------------------------------------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s turTru1.scaffold_102261 9759 134 + 30858 TGAAGAAAACAAAAA----------------------AAAGCAGATAGTAAAGAAG---A-----A-----AAAAAGGGACGTTAATTTATAATTCAAGGGTTGTGGGG-GGAGTTAT-TATAAGTCAC------TCTAATTTTTTTAAAA-----------------------------------------------------AGAGAG----TGAA--------GGGTAGGATGAAAAAA i turTru1.scaffold_102261 C 0 C 0 s felCat3.scaffold_2338 5341 148 - 11443 TGAGGAAATAAAAAAGATTTTATCCATACGTTTATATTAAGTAGATAGGAATTAAC---A-----A-----AAAAAATAAAGCTGATCCATAATTCAAGTGATGTGGGG-AAAGTTCTAAATAAGTCAC-----------TATCCTTACAG-----------------------------------------------------AGAGAA----GGAA------------AGGATGATAAGA i felCat3.scaffold_2338 C 0 C 0 s bosTau4.chr17 29977892 161 - 76506943 TGGAGAAAACAGAAAAATAATTGTAACACATTTATGGAAAACAGATAATAAAGCAC---A-----A-----AAAAAGCGAAGTTAATCTATAACTCAAGTGCAGTGGGG-TAGGTTAT-AAT-TTTCACtattttttttttttttttttaa-----------------------------------------------------aGAGAG----TAAA--------AGGCAGGATGAAAAAA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64153539 165 - 94057673 TGAGGAAACCACAAAACAATTTTTAATACG-TTATCGAAAGCAGATAGGAATTAAT---C-----AACAGCAAAAAGTAAAACTGATCCGGAATTCAACTGCTGCGGGGTAAAGTTGTAAATAAGTCAC-----------TATCCTTAAAG-----------------------------------------------------AAAAAA----AAAAAGAGAGTAGGGTAGGATGAAAAAA i equCab2.chr8 C 0 I 26 s dasNov2.scaffold_7587 65251 202 + 154172 TGAGGAAAGCAGGGAAG-------CAAACATTTATG-AAAGCACAAAGCAATTATC---ACGGG-A-----AAAAGACAAAGCTAGTCCATAACAC--AAATGCTAAGG-AAGAAAGTAAA-AAGTCAT-----------TATCCTTATAAAAATAAAAAGAGGCGAAAAAAGAGAAACTTATAGATAGGTCACTATCCTTACAGGAAAAATTTAAAA--------GGGAATGATGAAAAAG i dasNov2.scaffold_7587 I 4845 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e canFam2.chr26 3198353 551 + 42029645 I a score=55506.000000 s hg19.chrUn_gl000223 69434 32 + 180455 GAGAA---ATAACCATAGACACATAGGAAATTGAA s panTro2.chr12 196803 32 - 135371336 GAGAA---ATAACCATAGACACATAGGAAATTGAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 2971 32 + 4092 GAGAA---ATAACCATAGACACATAGGAAATTGAA i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233310 32 - 136387465 GAGAA---ATAACCACAGACACATAGGAAATTGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 206312 30 - 134511895 GAGAA---ATAACTACAA--ACATAGGAAATTGAa i rheMac2.chr11 C 0 I 416 s turTru1.scaffold_102261 9893 32 + 30858 GAGGA---ACAATCACAGATACATAGGAGATTGAA i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29978053 31 - 76506943 GAAAATGCAGAGCCACAGACACTTAAGAGAT---- i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_2338 5489 29 - 11443 ------GAACAACCACAGACATACAGGAAATTGAA i felCat3.scaffold_2338 C 0 C 0 s dasNov2.scaffold_7587 65453 31 + 154172 -GAAA---ATAACCAAACGTGCATAAGAAACTGAA i dasNov2.scaffold_7587 C 0 C 0 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e otoGar1.scaffold_101698.1-26550 21750 0 + 26550 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=123808.000000 s hg19.chrUn_gl000223 69466 97 + 180455 TGAAAATCCGCTCTATACTAATAAATTTGA----TAATTTGTGACACAAATGATTCTCCAGGA----CAACATGGGCCAAATTTGACCCAATTTTATCCACAATT---------------- s panTro2.chr12 196835 97 - 135371336 TGAAAATCCGCTCTATACTAATAAATTTGA----TTATTTGTGACACAAATGATTCTCCAGGA----CAAGATGGGCCAAATTTGACCCAATTTTATCCACAATT---------------- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 3003 97 + 4092 TGAAAATCCGCTCTATACTAATAAATTTGA----TTATTTGTGACACAAATGATTCTCCAGGA----CAAGATGGGCCAAATTTGACCCAATTTTATCCACAATT---------------- i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233342 97 - 136387465 TGAAAATCCGCTCTATACTAATAAATTTGA----TTATTTGTGACACAAATGATTCTCCAGGA----CAAGATGGGTCAAATTTGACCCAATTTTATCCACAATT---------------- i ponAbe2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 21750 100 + 26550 TGAAGATCCTCTCTACACTAGGAAATTCGAGATTTTTTGTGTAATACAAATGATTCACCAGGA----TTAGATGTGTCGAACTTTACCCAA-GACGTGGAAAAAC---------------- i otoGar1.scaffold_101698.1-26550 C 0 C 0 s turTru1.scaffold_102261 9925 86 + 30858 TGAAAATCCGATTTGTGTTAATAAATTCGAAA--TTCTCTGTGACACAAATGATTCTTAAAGG----GTAGATGTGTCAAATTCGACCCAAG----------------------------- i turTru1.scaffold_102261 C 0 I 29 s bosTau4.chr17 29978084 74 - 76506943 TGAGAATCCACTCTGTATTAATAAATTCTAAA--TTCTTT---------ATGGTTCTCAAGGA----GTAGATGTGTCAGATTTGATCC-------------------------------- i bosTau4.chr17 C 0 I 32 s felCat3.scaffold_2338 5518 104 - 11443 TGAGAATCCTCTCTATGCTAAGAAATTTGAAA--TT-----------AAATGATTCTCCTGGG----ATGGATGTGTCAAATTCAACTCAAGAAAGGAGAAAAACACATCATGGATAAAAA i felCat3.scaffold_2338 C 0 C 0 s dasNov2.scaffold_7587 65484 84 + 154172 TGAGAATAGTCt----gttaggaaatttgaaa--ttctttgtgacacacatgattctccaggaacatttagatg-atcgaatctgacccga------------------------------ i dasNov2.scaffold_7587 C 0 I 8382 e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=85325.000000 s hg19.chrUn_gl000223 69563 60 + 180455 TGAAGACAAATTCAGAGATCCTTTGCC--------AGAAAGCATCA--TAATGAGTTGC-TTAGTGAATTG s felCat3.scaffold_2338 5622 61 - 11443 TGAGGACAATTTCAGAGATTATCTGCC--------AAAAAGCACCAATCATtgactttc--tggggaattc i felCat3.scaffold_2338 C 0 C 0 s bosTau4.chr17 29978190 61 - 76506943 TGAAGACAGTATCAGGGAATCTGTGCC--------GAAAAGTATCCATTATTGCGTTTC--CAATGAATTC i bosTau4.chr17 I 32 C 0 s turTru1.scaffold_102261 10040 61 + 30858 TGAAGACAATGTCAGAGATTCTCCGCC--------GAAAAGCATCGTTCGCTGAGTTTC--CAGTGAATTC i turTru1.scaffold_102261 I 29 C 0 s otoGar1.scaffold_101698.1-26550 21850 69 + 26550 TGAAGACAAATTCAGAGGTTCTTTGTCAAAGACAAAGAAAGCATCA-TTATTAAGTTTC-TTGGCAAATTT i otoGar1.scaffold_101698.1-26550 C 0 C 0 s ponAbe2.chr12 233439 61 - 136387465 TGAAGACAAATTCAGAGATCCTTTGCC--------AGAAAGCATCA--TAATGAGTTGCTTTAGTGAATTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 3100 60 + 4092 TGAAGACAAATTCAGAGATCCTTTGCC--------AGAAAGCATCA--TAATGAGTTGC-TTAGTGAATTG i gorGor1.Supercontig_0070003 C 0 C 0 s panTro2.chr12 196932 60 - 135371336 TGAAGACAAATTCAGAGATCCTTTGCC--------AGAAAGCATCA--TAATGAGTTGC-TTAGTGAATTG i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr15 4882287 0 - 7320470 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=76765.000000 s hg19.chrUn_gl000223 69623 47 + 180455 CTTCAAACATCCAGTGA----------TTAGAGAATTC-TTATATTTA----TTCCCAGAGG s panTro2.chr12 196992 47 - 135371336 CTTCAAACATCCAGTGA----------TTAGAGAATTC-TTATATTTA----TTCCCAGAGG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 3160 47 + 4092 CTTCAAACATCCAGTGA----------TTAGAGAATTC-TTATATTTA----TTCCCAGAGG i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233500 47 - 136387465 CTTCAAACATCCAGTGA----------TTAGAGAATTC-TTATATTTA----TTCCCAGAGG i ponAbe2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 21919 58 + 26550 CCTCAAACATACAATAGATCACTACATTTATAGTATTTATTATAAATA----TTTCCAGAGA i otoGar1.scaffold_101698.1-26550 C 0 C 0 s turTru1.scaffold_102261 10101 49 + 30858 TTTCAAACATCCAGTGA----------TCAGAGAACTC---GTATTTAAATAGTTACAGAGG i turTru1.scaffold_102261 C 0 C 0 s bosTau4.chr17 29978251 37 - 76506943 TTTCAAACATCCAGTGA----------TCAGAGAACTC-TTATATTTA-------------- i bosTau4.chr17 C 0 I 11897 s felCat3.scaffold_2338 5683 51 - 11443 tttcaaacatccagtga----------ttacagaattc-ttacacataaaaatttccagagg i felCat3.scaffold_2338 C 0 I 2902 s tetNig2.chr21 2556433 47 - 5834722 CTTCAAACACCAGGTCA----------TTAAAGAACTT-GCAGCTTTA----TTGTCGCAAG i tetNig2.chr21 n 0 I 1695 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=33202.000000 s hg19.chrUn_gl000223 69670 35 + 180455 ---TAG------AACTCACcagtgaagtactagcataaaaacag s panTro2.chr12 197039 35 - 135371336 ---TAG------AACTCACcagtgaagtactagcataaaaacag i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 3207 35 + 4092 ---TAG------AACTCACcagtgaagtactagcataaaaacag i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233547 35 - 136387465 ---TAG------AACTCACcagtgaaatactagcataaaaacag i ponAbe2.chr12 C 0 C 0 s otoGar1.scaffold_101698.1-26550 21977 35 + 26550 ---TAG------AACTCACGAGAGAAGTACTAGCATGAAAACAG i otoGar1.scaffold_101698.1-26550 C 0 N 0 s turTru1.scaffold_102261 10150 44 + 30858 AATTAGAAGGGAAATTTTCTATTTATGTAATAGCATAAAGGCAC i turTru1.scaffold_102261 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=20216.000000 s hg19.chrUn_gl000223 69705 33 + 180455 acgcatggaccaatgtggaac----------agcgtagaaaaa s panTro2.chr12 197074 33 - 135371336 acgcatggaccaatatggaac----------agcgtagaaaaa i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 3242 33 + 4092 acgcatggaccaatatggaac----------agcgtagaaaaa i gorGor1.Supercontig_0070003 C 0 C 0 s ponAbe2.chr12 233582 33 - 136387465 acacatggaccaatatggaac----------agcgtagaaaga i ponAbe2.chr12 C 0 C 0 s turTru1.scaffold_102261 10194 43 + 30858 CAAAATGGACAGATGTATAATTTGAAAAAGAAGCGCAGAAAAA i turTru1.scaffold_102261 C 0 I 7621 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=441759.000000 s hg19.chrUn_gl000223 69738 817 + 180455 ccagaaataaccccatgcatatacagtcaactaatcttaggcaagtcaactaatcttgtgtcaagaatacacgatggggaaaggacagtcgcttcaataaatagcgtgaggaaaccggatatccaaatactgctacgcaaaagacctcattgcccgatgtgcacagaagccaatactatggcaccaggcgtttgagaaaagaaaagcttaattgcgagttgaccaacaaagtgacaggagtttagttcaaatctatctctctgtgctgcccttaaggcagcactattgtgaaaaaaggtttagagggtggattctgggattcacaggtgaatggtgaaggaaaaaggaagtctggaaagtccccgaccatgtgcagttgtctcttcaagcctcttcttgggtcccatgtgcaaattaaggtagagttagtgtgaaaagtgcagtggaaattcaggctgcgacatcagcaagctcattctgcatggactccgtttggttatattggtttcaactgatttcagccagttgtattatattacaaacggagtttcagcaaactgtttcttatctgccatcctgtaagctcaagaatttctgttagccggacgcggtggctcacgcctataatcctagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctcctcgggaggctgaggcaggagaatcgcttgaacctgggaggtggag s panTro2.chr12 197107 797 - 135371336 ccagaaataaccccatgcatatacagtcaactaatctt-------------------gtgtcaagaatacacgatggggaaaggacagtcgcttcaataaatagcgtgaggaaaccggatatccaaatactgctacgcaaaagagctcattgcccgatgtgcacagaagccaatactatggcaccaggcgtccgagaaaagaaaagcttaattgcgagttgaccaaccaagtgacaggagtttagttcaaatctatctctctgtgctgcccttaaggcagcacttttgtgaaaaaag-tttagagggtggattctgggattcacaggtgaatggtgaaggaaaaaggaagtctggaaagtccccgaccatgtgcagttgtctcttcaagcctcttcttgggtcccatgtgcaaattaaggtagagttagtgtgaaaagtgcagtggaaattcaggctgcgacatcagcaagctcattctgcatggactccgtttggttatattggtttcaactgatttcagccagttgtattatgttacaaacggagtttcagcaaactgtttcttatctgccatcctgtaagctcaagaatttctgttagccggacgcggtggctcacgcctgtaatcctagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaagttagctgggcgtggtggtgcacacctgtaatcccagctcctcgggaggctgaggcaggagaatcgcttgaacctgggaggtggag i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0070003 3275 817 + 4092 ccagaaataaccccatgcatatacagtcaactaatcttaggcaagtcaactaatcttgtgtcaagaatacacgatggggaaaggacagtcgcttcaataaatagtgtgaggaaaccggatatccaaatacTGCTACgcaaaagagctcattgtccgatgtgcacagaagccaatactatggcaccaggcgtttgagaaaagaaaagcttaattgcgagttgaccaacaaagtgacaggagtttagttcaaatctatctctctgtgctgcccttaaggcagcacttttgtgaaaaaagatttagagggtggattctgggattcacaggtgaatggtgaaggaaaaaggaagtctggaaagtccccgaccatgtgcagttgtctcttcaagcctcttcttgggtcccatgtgcaaattaaggtagagttagtgtgaaaagtgcagtggaagttcaggctgcgacatcagcaagctcattctgcatggactccgtttggttatattggtttcaactgatttcagccagttgtattatgttacaaacggagtttcagcaaactgtttcttatctgccatcctgtaagctcaagaatttctnttagccggacgcggtggctcacgcctgtaatcctagcactttgggaggccaaggcgggcagatcacatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcgcacctgtaatcccagctcctcgggaggctgaggcaggagaatcgcttgaacctgggaggtggag i gorGor1.Supercontig_0070003 C 0 N 0 s ponAbe2.chr12 233615 817 - 136387465 ccaaaaataaccccatgcatatacagtcaactaatcttcggcaagtcaactaatcttgtgtcaagaatacacgatggggaaaggacagtcgcttcaataaatagtgtgaggaaaccggatatcaaaatactgttacgcaaaagcgctcattgcccgatgtgcacagaagccaatactatggcaccaggcgtttgagaaaagaaaagcttaattgcgagttgaccaacaaagtgacaggagtttagttcaaatctatctctctgtgctgcccttaaggcagcacttttgtgaaaaaaggtttaaagggtggattctgggattcacaggtgaatggtgaaggaaaaaggaggtctggaaagtccccgaccatgtgcagttgtctcttcaagcctcttcttgggtcccatgtgcaaattaaggtagagttagtgtgaaaagtgcagtggaaattcaggctgcgacatcagcaagctcattctgcatggaccccagttggttatattggtttcaactgatttcagccagttgtattatcttacaaacggagtttcagcaaactgtttcttatctgccatcctgtaagctcaagaatttctgttagccggacgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcgtggtggtgcgcacctgtaatcccagctacttgggaggctaaggcaggagaatcgcttgaacctgggaggtggag i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=287322.000000 s hg19.chrUn_gl000223 70555 1072 + 180455 attgcagcgagccgacatcgcgccactgcactccagcctgggcgacaagagcgagactccatctcaaaaaaaaaaaat--tcgttagtcactggtttctttaactatttgggggcatggtttcaCAACTTCTTCTTCTTCTT--TTTTTTTTTTTTTGAGacaatccctcaccagaatctaggccttttctaacctgctcctccagactcttccaaactctgcccattacccagttccaaagccacttccacattttcaggatttattattagcaacagccccactcctcagtaccaatttTCtgtcttagtttattttctattgctgtaactgaatacctgacactgaataatttataaagaaaatgaatttatttcttacagttctggagactgggaagtccaaggttgagggacacttctggtaaggacttccttgctagcaggactctctgcagagccccaggtcagtccagggtgcacactgtgaagggggatcaagcagccgagcccatttctctctttctcttcctataaagccactaatgcccaccctcatgagctcatctaatcctagttacctcccaaaggtcccacctctcaattgccataggcagctttcccactctcctaacactgttacaatgggggttagttgcaacgtaattttcagagggcatagacattcaaatcatagcagtatatatccaaaataaataaaattaaaagatatctcagcgatatctgcactcccctgttcattgcagcattattcacaatagtgaagatgtagaaacaacctaagcatctatcaaaag----ataaagaaaatgtagtatacgtacacaatagaatattacttggcctcaaaaaaggagaaaattctgtgatttactacaacatggatgagcctggaggacattatgcaaagtgaaatacacatagaaatacacggatacagaaagaagatactacacgatctcacgtagatgtggaatcttaaaaagtcgaactcatagaaacagtggaagagtggttaccagaggtcaggtggcaagtaggggaaatgaggagatgtt s ponAbe2.chr12 234432 1071 - 136387465 gttgcagcgagccgagatcgtgccactgcactccagcctgggcgacaagagcgagactccatctcaaaaaaaaaaaaa-ttcgttagtcactggtttctttaactctttgggggcatggtttcaCAATTTCTTCTTCTTCTT-------CTTTTTTTGAGacaatccctcaccagaatctaggctttctctaacctgctcctccaaactcttccaaactctgccca-tacccagttccaaagccacttccacattttcaggatttattattagcaacagccccactccttagtaccaatttTCtgtcttagtttattttctgttgctgtaactgaatacctgacactgaataatttataaagaaaatgaatttatttcttacagttctggagactaggaagtccaaggttgagggacacttctggtaaggacttccttgctagcaggactctctgcagagccccaagtcagcccagggtgcacactgtgaagggggatcaagcagtcgagcccatttctctctttctgttcctataaagccgctaatgcccaccctcatgagctcatctaatcctagttacctcccaaaggtcccacctctcaattgccataggcagctttcccactctcctaacactgttacaatgggggttagttgcaacgtaagtttcagagggcatagatattcaaatcatagcagtatatatccaaaataaatgaaataaaaagatatctcagcgatatctgcactcccctgttcattgcagcattattcacaatagtgaagatgtagaaacaacctaagcatctatcaaaagataaataaagaaaatgtggtagacgtacacaatagaatattacttggcctcaaaaaagaagaaaattctgtgatttactacaacgtggatgagcctggaggacattatgcaaagtgaaatacaaatagaaatacacggatacagaaagaagataccacatgatctcacgtagatgtggaatcttaaaaagtcgaactcatagaaacagtggaagagtggttaccagaggtcaggtggcaagggtgggaaatgaggagatgtt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 197904 1076 - 135371336 attgcagcgagctgagatcgcgccactgcactccagcctgggcgacaagagcgagactccatctcaaaaaaaaaaaaaaattgttagtcactggtttctttaactatttgggggcatggtttcaCAACTACTTCTTCTTCTTCTTTTTTTTTTTTTTGAGacaatccctcaccagaatctaggccttttctaacctgctcctccaaactcttccaaactctgcccattacccagttccaaagccacttccacattttcaggatttattattagcaacagccccactcctcagtaccaatttTCtgtcttagtttattttctattgctgtaactgaatacctgacactgaataatttataaagaaaatgaatttatttcttacagttctggagactgggaagtccaaggttgagggacacttctggtaaggacttccttgctagcaggactctctgcagagccccaagtcagtccagggtgcacactgtgaagggggatcaagcagccgagcccatttctctctttctcttcctataaagccactaatgcccaccctcatgagctcatctaatcctagttacctcccaaaggtcccacctctcaattgccataggcagctttcccactctcctaacactgttacaatgggggttagttgcaacgtaattttcagagggcatagacattcaaatcatagcagtatatatccaaaataaataaaattaaaagatatctcagcgatatctgcactcccctgttcattgcagcattattcacaatagtgaagatgtagaaacaacctaagcatctatcaaaag----ataaagaaaatgtggtatacgtacacaatagaatattacttggcctcaaaaaaggagaaaattctgtgatttactacaacatggatgagcctggaggacattatgcaaggtgaaatacacatagaaatacacggatacagaaagaagatactacacgatctcacgtagatgtggaatcttaaaaagtcgaactcatagaaacagtggaagagtggttaccagaggtcaggtggcaagtgtgggaaatgaggagacgtt i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e xenTro2.scaffold_887 225475 0 - 314557 I e rheMac2.chr11 206342 416 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=117723.000000 s hg19.chrUn_gl000223 71627 262 + 180455 ggtcaaatgttttaaaaagagaacaaacttgcagttataacatgaataaattctggagacctaatggacagcatggtgacgacagttaataatatgttgtacgcttgaaattcactt-agagtaagcctgaaataccctaatcacacatacctaaagggtaactatgtgaggtgatggatacattcactggcttgattgtgtcagtcacttcacaatgatatatatatatatatatatatata---------------------AAGATCCCATTGTCATCTTG s panTro2.chr12 198980 283 - 135371336 ggtcaaatgttttaaaaagagaacaaacttgcagttataacatgaataaattctggagacctaatggacagcatggtgacgacagttaataatatgttgtacgcttgaaattcactt-agagtaagcctgaaataccctcgtcacacatacctaaagggtaactatgtgaggtgatggatacattcactggcttgattgtgtcagtcacttcacaattatatatatatatatatatatatatatatatattatatatatgtcaaaagatcccattgtcatcttg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 235503 264 - 136387465 ggtcagatgttttaaaaagagaacaaacttgcagttataacatgaataatttctgaagacctaatggacagcatggtgacgacagttaataatgtgttgtacgcttgaaattcacctaagagtaagcctgaaataccctcatcacacatacccaaagggtaactatgtggggtgatggatacattcactagctttattgtatcagtcacttcacaattatatatatatatat---tatatata-----------------tcaaaagatcccgttgtcaccttg i ponAbe2.chr12 C 0 I 1888 s rheMac2.chr11 206758 244 - 134511895 ggtcagatgttttaaaaagagaacaaacttgcagttataacatgaataagttctggagacctaatggacagcatggtgactacagtttataatgtattgtatatttgaaattcactt-agagtaag--tgaaatactctcatcacacatacccaaagggtaactatgtgaggtgatggatacattcattaagtggattgtgtcagtctcttcacaatgatata-------------------------------------tcaaaagatcctgttgtcaccttg i rheMac2.chr11 I 416 I 4 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e xenTro2.scaffold_887 225475 0 - 314557 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=63770.000000 s hg19.chrUn_gl000223 71889 134 + 180455 GATACAATTTTATCTCATTTTTTTCTTTTCTTAAACATTTTATTGATTTTATAGAGGGATTTCTTTTTTTGTTTGCATTTTTCC--AGCTATTGGGAGAGTGGCTGAGTACTGAGTCTATCACTACTTGGATGATA s xenTro2.scaffold_469 493369 121 + 935966 -----AATTCTATGAAATGTGTTTTAATTC-----CACTATTTTGGCTTTCT-GTTGCATTTTTTTTTTT-TTTGCAGGTTTCCTTTTCCAATAGGACGGAGGC-AAGAAAAAACAATCTTGTTTTCTGAATCA-- i xenTro2.scaffold_469 n 0 C 0 s rheMac2.chr11 207006 125 - 134511895 gatacaattttatttAATT------TTTTCTTAAACATTTTATTGATGTTATAGAGGGATTTC---TTTTGTTTGCATTTTTCC--AGCCACTGGGAGAGTGGCTGAGTACTGAGCCTATCACTACTTGGATCATA i rheMac2.chr11 I 4 C 0 s ponAbe2.chr12 237655 134 - 136387465 gatacaattttATCTACTTTTTTTCTTTTCTTAAACATTTTATTGATTTTATAGAGGGATTTCTTTTTTTGTTTGCATTTTTCC--AGCCATTGGGAGAGTGGCTGAGTACTGAGTCTATCACTACTTGGATGATA i ponAbe2.chr12 I 1888 C 0 s panTro2.chr12 199263 134 - 135371336 gatacaattttATCTCATTTTTTTCTTTTCTTAAACATTTTATTGATTTTATAGAGGGATTTCTTTTTTTGTTTGCATTTTTCC--AGCTATTGGGAGAGTGGCTGAGTACTGAGTCTATCACTACTTGGATGATA i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=36127.000000 s hg19.chrUn_gl000223 72023 81 + 180455 CAGGTAAGACTCCAGATTCACATTTCCA-AGTACTAAGAGTTCCTCTAA-AATGCCACAATC-CAGCCGGTCTTCATTTACATT s panTro2.chr12 199397 81 - 135371336 CAGGTAAGACTCCAGATTCACATTTCCA-AGTACTAAGAGTTCCTCTAA-AATGCCACAGTC-CAGCCGGTCTTCATTTACATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 237789 81 - 136387465 CAGGTAAGACTCCAGATTCACATTTCCA-AGTACTAAGAGTTCCTCTAA-AATGCCACAATC-CAGCCGGTCTTCATTTACATT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 207131 81 - 134511895 CAGTTAAGACTCCAGATTCACGCTTCCA-AGTACTAAGAGTTCCTCTAA-AGTGCCACAATC-AAGCCGGCCTTCATTTACATT i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_469 493490 78 + 935966 -----AGATTTCCACCTTAACATTTTCACAATGATCACAATCATTTTAACAATGATCTGATTAAAGCCAGTGGTT-TCCACACT i xenTro2.scaffold_469 C 0 C 0 s danRer6.chr11 11099221 74 + 44116856 CAATTAAGAGAACATATTTCTTATGCTA-GATAC---AAATTCTCATTA-AACATTTGAGAA-AAGCTGATGCGCAATCT---- i danRer6.chr11 N 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e oryLat2.chr17 11091990 43914 + 31848461 I e gasAcu1.chrV 12247010 0 + 12251397 I e tetNig2.chr21 2556480 1695 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=235928.000000 s hg19.chrUn_gl000223 72104 101 + 180455 TC--TGCTGAACACAGCA---------ATGCCCACTGGTATCTCTGAAGTGTAATTGCACCTTAGGTCGGCATTTCTCCAAGTAAAGCAGCTGTTTGGAATTGAATGCTCC---C s panTro2.chr12 199478 101 - 135371336 TC--TGCTGAACACAGCA---------ATGCCCACTGGTATCTCTGAAGTGTAATTGCCCCTTAGGTCGGCATTTCTCCAAGTAAAGCAGCTGTTTGGAATTGAATGCTCC---C i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 237870 101 - 136387465 TC--TGCTGAACACAGCA---------ATGCCCACTGGTATCTCTGAAGTGTAATTGCATCTTAGGTCGGCATTTCTCCAAGTAAAGCAGCTGTTTGGAATTGAATGCTCC---C i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 207212 101 - 134511895 TC--TACTGAACATGGCA---------ATGCCCACCGGTATCTCTGAAGTGTAATTGCATCTTAGGTTGGCATTTCTCCAAGTAAAGCAGCTGTTTGGAATTGAATGCTCC---C i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_469 493568 103 + 935966 GCGTTACTGCATACAGCA---------GTGATTATTGGGATCCTTGAACCGAAGGCGCATCTTAGGCCGGTACTTTTCCAGGTAAAGCAATTGCTTGGAATTAAATGCTCC---T i xenTro2.scaffold_469 C 0 C 0 s fr2.chrUn 297632361 109 + 400509343 TC--TACTGGATGCAGCAGTTATTGCGATGGCTGTTGGAATCTTTAAAGCGCAGGCGCATCTTTGGACGATATTTCTCCAAGTAGAACAGCTGCTTGCTGTTGAAAGCTCC---- i fr2.chrUn N 0 N 0 s tetNig2.chr21 2558175 103 - 5834722 -C--TACTGCACGCAGCAGTT------GTGGCCGTTGGTATCCTTGAATCGCAGGCGCATCTTGGGTCTGTATTTCTCGAGGTAAAAAAGCTGTCTGGAGTTAAAGGCTCC-A-- i tetNig2.chr21 I 1695 C 0 s gasAcu1.chrIX 706040 109 - 20249479 TC--TACTGGATGCAGCAGGTATTGCGATGGCCGTTGGAATCTTTGAAGCGCAGGCGCATCTTTGGACGATATTTCTCCAGGTAGAACAGCTGCTTGCTGTTGAACGCTCC---- i gasAcu1.chrIX n 0 I 679 s oryLat2.chr1 39111585 110 - 39973033 TC--TACTGGATGCAGCAGTTATTGCGGTGGCCGTTGGAGTCTTTGAAGCGCAGGCGCATCTTTGGACGATATTTCTCCAGGTAGAAGAGCTGCTTGCTGTTGAACGCCCCC--- i oryLat2.chr1 n 43914 I 6 s danRer6.chr11 11099295 110 + 44116856 TT--TACTGAATGCAGCAGTTGGTGCGATGTCCGTTGGAATCCTTGAATCGAAGACGCATTTTGGGACGATATTTTTCCAGGTAGAAAAGCTGCTTGCTGTTAAATGCTCC--A- i danRer6.chr11 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=-10666.000000 s hg19.chrUn_gl000223 72205 9 + 180455 CTTC--------------------------------------------------------------------TTTTT s panTro2.chr12 199579 9 - 135371336 CTTC--------------------------------------------------------------------TTTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 237971 9 - 136387465 CTTC--------------------------------------------------------------------TTTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 207313 9 - 134511895 CTTC--------------------------------------------------------------------TTTTT i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_469 493671 9 + 935966 CTTC--------------------------------------------------------------------GTTTT i xenTro2.scaffold_469 C 0 I 2216 s tetNig2.chr21 2558278 8 - 5834722 CGTC--------------------------------------------------------------------TCTT- i tetNig2.chr21 C 0 I 142 s gasAcu1.chrIX 706828 8 - 20249479 -CTC--------------------------------------------------------------------ACTTA i gasAcu1.chrIX I 679 I 1 s oryLat2.chr1 39111701 76 - 39973033 -TTCCTGGAGAACACGGGGGAACAAGTCAGAAGGGGGAAAACAGGCAGGAAACATGGAGGACGGGGGGAGAAACTCA i oryLat2.chr1 I 6 I 1 s danRer6.chr11 11099405 9 + 44116856 CGCC--------------------------------------------------------------------GCTTT i danRer6.chr11 C 0 I 1280 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=87783.000000 s hg19.chrUn_gl000223 72214 37 + 180455 TGTCTTATAAACTGAACTGCATCTTCATACTTAATTC s panTro2.chr12 199588 37 - 135371336 TGTCTTATAAACTGAACTGCATCTTCATACTTAATTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 237980 37 - 136387465 TGTCTTATAAACTGAACTGCATCTTCATACTTAATTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 207322 37 - 134511895 TGTCTTATAAACTGAACTGCATCTTCATGCTTAATTC i rheMac2.chr11 C 0 C 0 s tetNig2.chr21 2558428 37 - 5834722 TGCCGAATGAACTGCACAGCATCCTCATACTTCATCC i tetNig2.chr21 I 142 C 0 s fr2.chrUn 43166253 37 + 400509343 TGCCGTATGAACTGCACGGCGTCCTCATACTTCATAC i fr2.chrUn N 0 C 0 s gasAcu1.chrIX 706837 37 - 20249479 TGTCGTATGAACTGGACAGCGTCTTCATATTTCATCC i gasAcu1.chrIX I 1 I 308 s oryLat2.chr1 39111778 37 - 39973033 TGTCGGATGAACTGGACCGCGTCTTCATATTTCATTC i oryLat2.chr1 I 1 C 0 s danRer6.chr11 11100694 37 + 44116856 TGTCGAATGAATTGAACAGCATCCTCATACTTCATCC i danRer6.chr11 I 1280 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e xenTro2.scaffold_469 493680 2216 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=-10972.000000 s hg19.chrUn_gl000223 72251 16 + 180455 CATAT----TCAAAG-CAAGC s rheMac2.chr11 207359 20 - 134511895 CATATTCAGTCAAAG-CAAGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238017 16 - 136387465 CATAT----TCGAAG-CAAGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199625 16 - 135371336 CATAT----TCAAAG-CAAGC i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 495896 16 + 935966 CAAAT----TAATAT-GTGGG i xenTro2.scaffold_469 I 2216 C 0 s tetNig2.chr21 2558465 5 - 5834722 ----------------CGCTC i tetNig2.chr21 C 0 I 1052 s fr2.chrUn 43166290 5 + 400509343 ----------------CGCTC i fr2.chrUn C 0 N 0 s gasAcu1.chrIX 707182 16 - 20249479 CACAT--GACAAA---CAGGC i gasAcu1.chrIX I 308 I 1 s oryLat2.chr1 39111815 20 - 39973033 CACATTCGATCAATG-CGAGC i oryLat2.chr1 C 0 I 1 s danRer6.chr11 11100731 20 + 44116856 CACACTCAATCAGGGCCAGG- i danRer6.chr11 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=-7881.000000 s hg19.chrUn_gl000223 72267 17 + 180455 GCTGCCAGCAC------AGGTGC s rheMac2.chr11 207379 17 - 134511895 GCCACCAGCAC------AGGTGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238033 17 - 136387465 GCTGCCAGCAC------AGGTGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199641 17 - 135371336 GCTGCCAGCAC------AGGTGC i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 495912 17 + 935966 GGTGGCTGGAG------AACATA i xenTro2.scaffold_469 C 0 C 0 s tetNig2.chr21 2559522 11 - 5834722 GCAGCCAGCCT------------ i tetNig2.chr21 I 1052 C 0 s gasAcu1.chrIX 707199 11 - 20249479 TCAGACGGCTC------------ i gasAcu1.chrIX I 1 I 1 s oryLat2.chr1 39111836 11 - 39973033 CCACCAGAACC------------ i oryLat2.chr1 I 1 I 170 s danRer6.chr11 11100751 17 + 44116856 GCAACCAGCACTGGGGC------ i danRer6.chr11 C 0 I 92 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig5115 13963 1509 + 23967 T e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=384459.000000 s hg19.chrUn_gl000223 72284 131 + 180455 CCTT-----CCCAATCCCACAGCACAATGCACTGCAAGGCAGCAACCTGGCTTTTCACGCCCTTTAGTGATTAACAGGTTTAGCCAGTCATCTGCTATCTGATTAGGTGGTGGAGCTTCATCGTCAAAAGACCAAT s rheMac2.chr11 207396 131 - 134511895 CCTT-----CCCAATCCCACAACACAATGCACTGCCATGCAGCAATCTGGCTTTTCATGCCATTTGGTGTTTAACAGGTTTAGCCAATCATCTGCTATCTGATTAGGTGGTGGAGCTTCATCGTCAAATGACCAAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238050 131 - 136387465 CCTT-----CCCAATCCCACAGCACAATGCACTGCAACACAGCAACCTGGCTTTTCACGCCCTTTGGTGTTTAACAGGTTTAGCCAATTATCTGCTGTCTGATTAGGTGGTGGAGCTTCGTCGTCAAAAGACCAAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199658 131 - 135371336 CCTT-----CCCAATCCCACAGCACAATGCACTGCAAGGCAGCAACCTGGCTTTTCACGCCCTTTGGTGATTAACAGGTTTAGCCAGTCATCTGCTATCTGATTAGGTGGTGGAGCTTCATCGTCAAAAGACCAAT i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 495929 131 + 935966 CCTC-----CCAAGTCCAGCCACACAGTGAACAGCAATGCAGCATCCAGCCTCCTCACGGAATTTGGTTTTCAAGAGGTTTAGCCAATCATCAACTATCTGTGTTGGAGGTGGGGCTCCATCATCAAAGGGCCAAT i xenTro2.scaffold_469 C 0 I 4501 s tetNig2.chr21 2559533 136 - 5834722 CCTCACCGGCCCAGTCCTGCCACACAATGCACGGCGACGCAGCAGCCAGGTTCCTCTCGGAACTTGGTGTTGAGCAGCTTGAGCCAGTCGTCCACGATCTCAGTGGGAGGAGGGCCGCCATCGTCGAAAGGCCAGT i tetNig2.chr21 C 0 I 86 s fr2.chrUn 297633140 131 + 400509343 CCTC-----CCCAGTCCGGCCACGCAGTGGACAGCAATGCAGCAGCCGGGCTCCTCCCTGAACTTCAGCTTCAGCAGATTCAGCCAATCATCCACAATCTGGTTAGAAGGAGGGGCTCCATCATCAAACGGCCAAT i fr2.chrUn N 0 I 530 s gasAcu1.chrIX 707211 131 - 20249479 CCTG-----CCCAGACCGGCCACACAGTGCACCGCCACGCAGCAGCCCGGCTCCTCCCTGAACTTCAGCTTCAGCAGGTTCAGCCAATCGTCCACGATCTGGTTGGAGGGAGGAGCTCCGTCATCGAACGGCCAAT i gasAcu1.chrIX I 1 I 619 s oryLat2.chr1 39112017 131 - 39973033 CCTC-----CCCAGCCCTGCCACACAGTGGACAGCGATGCAGCAGCCAGGCTCCTCCCTGAACTTCAGCTTCAGCAGGTTCAGCCAGTCGTCCACAATTTGGTTGGAGGGAGGGGCTCCGTCGTCAAACGGCCAAT i oryLat2.chr1 I 170 I 283 s danRer6.chr11 11100860 131 + 44116856 CCTT-----CCAAGGCCTGCCACACAATGCACGGCAATGCAGCATCCTGGCTCCTCCCTGAACTTAACCCGAAGAAGATTCAGCCAATCATCAACAATCTGGTTGGAGGGAGGAGCTCCATCATCAAAGGGCCAAT i danRer6.chr11 I 92 I 92 s petMar1.Contig485 57026 131 + 58350 CCTC-----CCAAGGCCAGCAACGCAGTGAACACCAATGCAACAGTCAGGCTCGTCACGGAACTTGGTCTTGCACAGGTTCAGCCAATCATCAACAATCTTGTTAGATGGTGGTGCCCCATCATCAAAAGACCAGT i petMar1.Contig485 n 1509 I 800 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=51800.000000 s hg19.chrUn_gl000223 72415 23 + 180455 CTAAAATATGGATTCC------TTCTTTT s rheMac2.chr11 207527 23 - 134511895 CTAAAATGTGGATTCC------TTGTTTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238181 23 - 136387465 CTAAAATGTGGATTCC------TTGTTTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199789 23 - 135371336 CTAAAATGTGGATTCC------TTCTTTT i panTro2.chr12 C 0 C 0 s tetNig2.chr21 2559755 23 - 5834722 CCAGAACCTGGATTCC------CTCCTTC i tetNig2.chr21 I 86 C 0 s fr2.chrUn 297633801 23 + 400509343 CCAGAACCTGGATTCC------TTCTTTG i fr2.chrUn I 530 C 0 s gasAcu1.chrIX 707961 23 - 20249479 CCAGGACTTGGATCCC------TTCTTTC i gasAcu1.chrIX I 619 C 0 s oryLat2.chr1 39112431 23 - 39973033 CCAGAACTTGGATTCC------CTCCTTC i oryLat2.chr1 I 283 C 0 s danRer6.chr11 11101083 23 + 44116856 CCAGAACCTGAATGCC------CTCCTTG i danRer6.chr11 I 92 C 0 s xenTro2.scaffold_201 1415045 15 - 1841143 --------TGAATTCC------TTCCTTT i xenTro2.scaffold_201 n 4501 C 0 s ornAna1.Ultra467 1274940 21 - 1440234 --------TGTACTCAGGAGAGTTTTTTT i ornAna1.Ultra467 N 0 N 0 s petMar1.Contig485 57957 12 + 58350 -----------ATGCC------TTGCTGT i petMar1.Contig485 I 800 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=157589.000000 s hg19.chrUn_gl000223 72438 70 + 180455 TCAACTGGAACTTTACCAAATGTAGCATCACAAACTCAAACCAAAGGTGTCACTCCACACGTCTCACATT s rheMac2.chr11 207550 70 - 134511895 TCAACTGGAGCTTTACCAAATGTAGCATCACAAGCTCAAACCAAAAGTGTCACTCCACACTTCTCACATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238204 70 - 136387465 TCAACTGGAACTTTACCAAATGTAGCATCACAAACTCAAACCAAAGGTGTCACTCCACATGTCTCACATT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199812 70 - 135371336 TCAACTGGAACTTTACCAAATGTAGCATCACAAACTCAAACCAAAGGTGTCACTCCACACGTCTCACATT i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_201 1415060 70 - 1841143 TCGACTAGAGCAGTATCATAAGTGGCTTCACACACTCTTACTAATGTTGTAACACCATATTTTTTAAGCT i xenTro2.scaffold_201 C 0 n 0 s tetNig2.chr21 2559778 70 - 5834722 TCTACCGGGGCCTTGTCATAGGTGGCATCGCAGACTCGCACCAGTGTGTTTACGTGGAATTTCTTCAGCT i tetNig2.chr21 C 0 I 78 s fr2.chrUn 297633824 70 + 400509343 ACCACCAGGGTGGCATCATAGGTGGCCTCACAAACTCTGACGACGGTGGTCACTCCATACTTTTTCAGCT i fr2.chrUn C 0 I 107 s gasAcu1.chrIX 707984 70 - 20249479 ACCACCAGAGTGGCGTCATAAGTGGCCTCACAAACTCGCACGACGGTGGTCACTCCGTACTTCTTCAGCT i gasAcu1.chrIX C 0 I 285 s oryLat2.chr1 39112454 70 - 39973033 ACCACCAGGGCGGCGTCGTAGGTGGCTTCACAGACTCTCACCACAGTGGTGACTCCGTATTTCTTCAGTT i oryLat2.chr1 C 0 I 75 s danRer6.chr11 11101106 70 + 44116856 ACAACCAGGTTTGCATCATACGTGGCCTCGCACACTCTAACAACCGTTGTCACCCCATATTTCTTCAGTT i danRer6.chr11 C 0 I 159 s petMar1.Contig485 57969 70 + 58350 TCCACAGGGCTCTTGTCATAGGTCACTTCACAAACTCTCACCACAGTGGTCACATTATATTTCTTAAGTT i petMar1.Contig485 C 0 n 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=233657.000000 s hg19.chrUn_gl000223 72508 93 + 180455 CCTCTGTGAACTTGTTGCA-GTGGCACTGGTAGACTTGTGGGTTATGAGAAAATGCATGTTCCTGT---AA---ATCTCCACAGGGGCTGAA----CAGTCCAT s rheMac2.chr11 207620 97 - 134511895 CCTCTGTGAACCTGTTGCA-GTGGCACTGGTAGACTTGTGGGTTATGAGAAAATGCATGTTCCTGT---AG---ATCTCCACAGGGGCTGGACAGTCAGTCCAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238274 93 - 136387465 CCTCTGTGAACTTGTTGCA-GTGGCACTGGTAGACTTGTGGGTTATGAGAAAATGCATGTTCCTGT---AA---ATCTCCACAGGGGCTGAA----CAGTCCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199882 93 - 135371336 CCTCTGTGAACTTGTTGCA-GTGGCACTGGTAGACTTGTGGGTTATGAGAAAATGCATGTTCCTGT---AA---ATCTCCACAGGGGCTGAA----CAGTCCAT i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 500561 97 + 935966 CCTCTGTGAACTTGTTGAGTGTGGCATTGGTTGGATTATGGGTAATAAGAAAACGCATGCACTCATGAGAG---ATTTCTACTGGAGCTGGA----CGGTTCAT i xenTro2.scaffold_469 I 4501 C 0 s tetNig2.chr21 2559926 97 - 5834722 CCTCGGTGAACTTGTTGAGCGTGGCATTGGTGGGGTTGTGGGTGATGAGGAACCTCATACAACCGT---AGGTGATCTCTACTGCAGCAGGG----CGATTCAT i tetNig2.chr21 I 78 C 0 s fr2.chrUn 297634001 97 + 400509343 CCTCAATAAACTTGTTGAGGGTGGCATTTGTGGGGTTGTGGGTAATGAGGAACCGCATGTTCTTGT---AGGTGATCTCCACAGGGGCCGGT----CGATTCAT i fr2.chrUn I 107 C 0 s gasAcu1.chrIX 708339 97 - 20249479 CCTCGATGAACTTGTTCAGGGTGGCGTTGGTGGGATTGTGGGTAATGAGGAACCTCATGTTTTTGT---AGGTGATCTCCACAGGGGCCGGT----CTGTTCAT i gasAcu1.chrIX I 285 C 0 s oryLat2.chr1 39112599 97 - 39973033 CCTCTATAAACTTGTTCAGCGTGGCGTTGGTGGGATTGTGGGTAATGAGGAACCTCATGTTCTTGT---AGGTGATCTCAACGGGGGCGGGT----CTGTTCAT i oryLat2.chr1 I 75 C 0 s danRer6.chr11 11101335 95 + 44116856 --TCGATGAATTTGTGAAGCGTGGCATTAGTGGGATTGTGGGTAATGAGGAATCTCATGTTTTTGT---AAGTGATCTCCACTGGGGCAGGT----CTATTCAT i danRer6.chr11 I 159 I 399 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=-2856.000000 s hg19.chrUn_gl000223 72601 23 + 180455 TATGG-CAAAGAAAAAGTGTGAGC s rheMac2.chr11 207717 23 - 134511895 TTTGG-CAAAGAAAAAGTGTGAGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238367 23 - 136387465 TATGG-CAAAGAAAAAGTGTGAGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199975 23 - 135371336 TATGG-CAAAGAAAAAGTGTGAGC i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 500658 24 + 935966 TTTGATCAGATTAAAAAAATAAGG i xenTro2.scaffold_469 C 0 C 0 s tetNig2.chr21 2560023 6 - 5834722 ------------------GTTGGC i tetNig2.chr21 C 0 I 452 s fr2.chrUn 297634098 6 + 400509343 ------------------TCGAGC i fr2.chrUn C 0 I 10 s gasAcu1.chrIX 708436 6 - 20249479 ------------------ACGAGC i gasAcu1.chrIX C 0 I 446 s oryLat2.chr1 39112696 6 - 39973033 ------------------TCGAGC i oryLat2.chr1 C 0 C 0 s danRer6.chr19 34759251 6 + 48708673 ------------------GTTGGC i danRer6.chr19 n 399 I 2 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=6125.000000 s hg19.chrUn_gl000223 72624 70 + 180455 ATGTGTGTGAGTGTAATGGGGAAAG----TGAAAAA---A--AATCAATAAATCTTGAAATGTTTCACAGCAGAAAACT s rheMac2.chr11 207740 64 - 134511895 ATGT------GTGTAATGGGGAAAG----TGAAAAG---A--AATTAATAAATCTTGAAATGTTTCACAGCAGAAAACT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238390 70 - 136387465 ATGTGTGTGAGTGTAATGGGGAAAG----TGAAAAA---A--AATCAATAAATCTTGAAATGTTTCACAGCAGAAAACT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 199998 70 - 135371336 ATGTGTGTGAGTGTAATGGGGAAAG----TGAAAAA---A--AATCAATAAATCTTGAAATGTTTCACAGCAGAAAACT i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 500682 68 + 935966 ATATTTCT--------TGGGAAAAAATCCTGAAAAATTCA--CAGCaaaaaatattaaaaatttctataaagaaaaaa- i xenTro2.scaffold_469 C 0 C 0 s fr2.chrUn 297634114 48 + 400509343 ----------------------ACG----TTTGGAA---AATAATTA--CAATCCCAAAGCTTCCCACAGATTAAAACT i fr2.chrUn I 10 I 373 s oryLat2.chr1 39112702 64 - 39973033 CATCGTGAGAGCGTAAC----AACG----TACAGAT---A--TACCA--AAAGCCAAAGGTTTTCCACGGAGTAGAAAG i oryLat2.chr1 C 0 I 2 s danRer6.chr19 34759259 6 + 48708673 ---------------------GACG----TC------------------------------------------------ i danRer6.chr19 I 2 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrIX 708442 446 - 20249479 I e tetNig2.chr21 2560029 452 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=4891.000000 s hg19.chrUn_gl000223 72694 60 + 180455 TTTTAATGTTTTATTTTTAG--------ATCACTAAACTGCC---TATTG-------ATCAGTG-TTTTTTCTATTTAA s rheMac2.chr11 207804 64 - 134511895 TTTTAATCTTTTATTTTTAG--------ATCACTAGACTGCCTATTATTG-------ATCAGTGTTTTTTTCGACTTAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238460 60 - 136387465 TTTTAATGTTTTATTTTTTG--------ATCACTAAACTGCC---TATTG-------ATCACTG-TTTTTTCTATTTAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200068 60 - 135371336 TTTTAATGTTTTATTTTTAG--------ATCACTAAACTGCC---TATTG-------ATCAGTG-TTTTTTCTATTTAA i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 500750 71 + 935966 ----aaaaatttttttGCAGGAAGAAAAAAAAAAAAAAGACT---TATTGCAAAAGTCCCAGCG-ATGGTTTTAATGCA i xenTro2.scaffold_469 C 0 C 0 s oryLat2.chr1 39112768 56 - 39973033 TTGTAAACAGTTTGAGTTGG--------A----GGGAATGTC---AAACA-------AACGTCC-AGAGAGCTCCGTGA i oryLat2.chr1 I 2 I 2 s danRer6.chr19 34759265 54 + 48708673 TTTAAAACAATTACAAT--G--------A----AGTACTTAT---AATTC-------CTGTTCC-TTTTTTCTTTTCAA i danRer6.chr19 C 0 I 74 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e fr2.chrUn 297634162 373 + 400509343 I e gasAcu1.chrIX 708442 446 - 20249479 I e tetNig2.chr21 2560029 452 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=14006.000000 s hg19.chrUn_gl000223 72754 40 + 180455 CTTGTCTATTCCTTATGAAGCTTCTG----TCTTCAAGATAAGC------ s rheMac2.chr11 207868 40 - 134511895 CTTGTCTATTCCTTATGAAGCTACTA----TCTTCAAGATAAGC------ i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238520 40 - 136387465 CTTGTCTATTCCTTATGAAGCGTCTG----TCTTCAAGATAAGC------ i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200128 40 - 135371336 CTTGTCTATTCCTTATGAAGCTTCTG----TCTTCAAGATAAGC------ i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 500821 23 + 935966 --------------ATCAAGCAC-------TTTGTGAGGGATGC------ i xenTro2.scaffold_469 C 0 C 0 s oryLat2.chr1 39112826 45 - 39973033 CCCGCTAAC-----AAAAACCCTCCAAACTTCTCTGAGGTTGGCAAAGac i oryLat2.chr1 I 2 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e fr2.chrUn 297634162 373 + 400509343 I e danRer6.chr19 34759319 74 + 48708673 I e gasAcu1.chrIX 708442 446 - 20249479 I e tetNig2.chr21 2560029 452 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=28478.000000 s hg19.chrUn_gl000223 72794 204 + 180455 AGAATTGTTCAGAAT-CCACTGGAATCCAAATTCAACT------------TGGGCCTCAATTTCTGCAGATGGACACCTCTGGACTCCAAAAAATCCAAGGACATAAAAAACTTAAGCAGCCTTTA--T--------TACATTTAGTTCAACAAGTTTAAA-----GTG----------TAGGTCACTTTC-CACTT-TTGTTTACTTGATG-----CTTAATTTTACTGG----------AATCGTTAAAAGAAATAT--------- s rheMac2.chr11 207908 201 - 134511895 AGAATTATTCAGAAC-CCACTGGAATCCAACCTCAATT------------TAGGCCTCAATTTCTGCAAATGGACACCTCCAGACTCCAAAAAATCCAATGACATACAAAGCTTAAGCAGCCCTTA--T--------TACCTTCAGTT---CAAGTTAAAA-----GTG----------TAGGTCACTTTC-CACTT-GTGCTTACTTGATG-----CTTAATTTTACTGG----------AATCGCTAAAAGAAATAT--------- i rheMac2.chr11 C 0 I 323 s ponAbe2.chr12 238560 204 - 136387465 AGAATTGTTCAGAGT-CCACTGGAATCCAAATTCAACT------------TGGGCCTCAATTTCTGCAGATGGACACTTCTGGACTCCAAAAAATCCAAGGACATACAAAACTTAAGCAGCCTTTA--T--------TACATTTAGTTCAACAAGTTAAAA-----GTG----------TAGGTCACTTTC-CACTT-TTGTTTACTTGATG-----CTTAATTTTACTGG----------AATCGTTAAAAGAAATAT--------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200168 204 - 135371336 AGAATTGTTCAGAAT-CCACTGGAATCCAAATTCAACT------------TGGGCCTCAATTTCTGCAGATGGACACCTCTGGACTCCAAAAAATCCAAGGACATAAAAAACTTAAGCAGCCTTTA--T--------TACATTTAGTTCAACAAGTTTAAA-----GTG----------TAGGTCACTTTC-CACTT-TTGTTTACTTGATG-----CTTAATTTTACTGG----------AATCGTTAAAAGAAATAT--------- i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 500844 211 + 935966 AG-----TACAGCAT-CCAATGGAATTTTCTTACA----------------------TAACTTATGGAAGGGAA-----ATGAA---AAAGAAATTAAAAAAAAAAAAATGGACCAATGGTCTTTA--TGGCAAGGAGGCACTCATTTGGAAAAGAAAAAATAACTGCA----------GAGATGGCCTCCGCACTTAGTCCCCACTTTGTAAAAGTCTTCCCTTCACAAAAGGAAAAATTAATTTGCAAAAGCAAGAT--------- i xenTro2.scaffold_469 C 0 C 0 s oryLat2.chr1 39112871 202 - 39973033 ggaaatttaaaaaat-gaacgagaatcaaaaactcaaaaa----------caaccGGCAATGAGAACGAGCTGGCAGCCAGGAA---GGAgcaggtaattgaaaaagtaacgtaaacctctcctctgaa--------gtaa---aactaaagaaaaaggaa-----gta--------aaaaggCTGGTTCC-ACCTTGATTCTGGCCAGGTG-----------------GA----------AGCCGACGAGGGCAGTGTGCAACGGCT i oryLat2.chr1 C 0 C 0 s danRer6.chr19 34759393 219 + 48708673 GGACACTGGAATACTAGAAGTACAAACAAAACGTAAAAAAGAGGGTGATCTAGTCCACAATGTTAAAAAA--AGTAGAACAAAA---GGGATGAGAAACTGAAAGAAAAATGGGAGACTATCCTTC--A--------GTCATCCAATTGAGACAATTGAGA-----TTACCCCATTCAGGAGAAGAGTTTC-TGATTGGCTACAGGGAGA-A-----------------AA----------ATCTGTAGGAAGGAATGAGACAGGGAT i danRer6.chr19 I 74 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e fr2.chrUn 297634162 373 + 400509343 I e gasAcu1.chrIX 708442 446 - 20249479 I e tetNig2.chr21 2560029 452 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=-6500.000000 s hg19.chrUn_gl000223 72998 41 + 180455 ---------------------------ACTTGCAATTTTTTT-AAAAAGGTATCTA------------TTTCTGAGGCCAG s rheMac2.chr11 208432 40 - 134511895 ---------------------------ACTTGCAATTTTTT--AAAAAGGTATCTA------------TTTCTGAGGCCAG i rheMac2.chr11 I 323 C 0 s ponAbe2.chr12 238764 41 - 136387465 ---------------------------ACTTGCAATTTTTTT-AAAAAGGTATCTA------------TTTCTGAGGCCAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200372 42 - 135371336 ---------------------------ACTTGCAATTTTTTTAAAAAAGGTATCTA------------TTTCTGAGGCCAG i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 501055 53 + 935966 ---------------------------GGTCTCAAGGTATGA-AAATAAATAGTAACTCCCATATGCTTTACTGCAGCTGG i xenTro2.scaffold_469 C 0 C 0 s oryLat2.chr1 39113073 50 - 39973033 GAAGTTACCCCATCCAGG---CCAAGTGATCGC---TGGTTC-TGGGAG------------------------GTGCCCCG i oryLat2.chr1 C 0 I 1 s danRer6.chr19 34759612 54 + 48708673 G----------CTCGAGGACTACACGGGATCCCAAAAGGGTA-TAGAAGAGACAGA----------------CGGGCCCAG i danRer6.chr19 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e fr2.chrUn 297634162 373 + 400509343 I e gasAcu1.chrIX 708442 446 - 20249479 I e tetNig2.chr21 2560029 452 - 5834722 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=-8783.000000 s hg19.chrUn_gl000223 73039 55 + 180455 TC-----TTGGTGTCT-----AGAGTTTTC---------------------AAGGTAGTATTAATGACAGCACGTAGAACCTCAAA s rheMac2.chr11 208472 55 - 134511895 TC-----TTGGTATCT-----CGAGTTTTC---------------------AAGGCAGTGTTGATGACAGCACGTAGAACCTCAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238805 55 - 136387465 TC-----TTGGTGTCT-----AGAGTTTTC---------------------AAGGCAGTGTTAATGACAGCACGTAGAACCTCAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200414 55 - 135371336 TC-----TTGGTGTCT-----AGAGTTTTC---------------------AAGGTAGTGTTAATGACAGCATGTAGAACCTCAAA i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 501108 47 + 935966 CAAAAGGCTGATGATT-----GGAG----------------------------GGTGGGCTCAAAGA-GGCA-----GACTTTTCA i xenTro2.scaffold_469 C 0 C 0 s tetNig2.chr21 2560481 41 - 5834722 TC-----TTGGAA----TCAGGGAGGTTTC---------------------TGGGTAG--------------CGTAGTCCCTCGG- i tetNig2.chr21 I 452 I 10 s oryLat2.chr1 39113124 63 - 39973033 TC-----CTGCCAACCTTCCGGGGTTCCTCCTGTGGCTCAAGTGCGTGGGATGGATGG--------------CGAGTTTGCG---- i oryLat2.chr1 I 1 I 1 s danRer6.chr19 34759666 44 + 48708673 -T-----GTGCTGGCTGTCAGGGAGGCTTC---------------------TGGGTGG--------------CGTAGTCCCACGG- i danRer6.chr19 C 0 n 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e fr2.chrUn 297634162 373 + 400509343 I e gasAcu1.chrIX 708442 446 - 20249479 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=182285.000000 s hg19.chrUn_gl000223 73094 79 + 180455 GCTCATTTGTCGGTGAAAATGCTGTGCTAAGCCTGGCAGAAGTCTGCTCCCACACTCAGAATCACCATAAATGTGCAAC s rheMac2.chr11 208527 79 - 134511895 GCTCATTTGTCGGTGAAAATGCTGTGCTCAGCCTGGCAGAAATCTGCTACCACACTCAGAGTCACCATAAATGTGCAAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238860 79 - 136387465 GCTCATTTGTTGGTGAAAATGCTGTGCTAAGCCTGGCAGAAGTCTGCTTTCACACTCAGAATCAGCATAAATGTGCAAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200469 79 - 135371336 GCTCATTTGTCGGTGAAAATGCTGTGCTAAGCCTGGCAGAAGTCTGCTCCCACACTCAGAATCACCATAAATGTGCAAC i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_469 501155 79 + 935966 GCTCACTTGTCCGCGCCAAAGCCGTGCTGAGCCTGGCAGTATTCTGTTCTTATGCGCCGAATCGCCATAAATATGCCAC i xenTro2.scaffold_469 C 0 n 0 s tetNig2.chr21 2560532 73 - 5834722 GTTCACTTCTCCGCTGAGGTGAGGTGCTGTGCCTGGCAGAATTCACCAC------TCACACACGCCATAAAGGTGTGGC i tetNig2.chr21 I 10 n 10 s fr2.chrUn 297634535 79 + 400509343 GTTCACTCGTCTGCATAGACAGCGTGCTGAGCCTGGCAGTAGTCTCCACTGCCCTTCAGAAACTCCATAAATGTGTGAC i fr2.chrUn I 373 I 4 s oryLat2.chr1 39113188 79 - 39973033 GTTCACTCGTCTGCATAGGCAGCGTGCTGAGCCTGGCAGTAGTCTCCACTGCCCTTCAGAAACTCCATAAATGTGTGAC i oryLat2.chr1 I 1 I 4 s gasAcu1.chrIX 708888 79 - 20249479 GTTCACTCGTCTGCATAGGCAGCGTGCTGAGCCTGGCAGTAGTCCCCACTGCCCTTCAGAAACTCCATAAATGTGCGAC i gasAcu1.chrIX I 446 I 4 s danRer6.chr11 11101829 79 + 44116856 GTTCACTTCTCTGCATAAACGCCGTGCTGAGCCTGGCAGTAATCCCCACTGCCCTTCAGAAACTCCATAAATGTGTGAC i danRer6.chr11 I 399 N 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=12507.000000 s hg19.chrUn_gl000223 73173 63 + 180455 ATCACCA-GAAAGTGCTGGTGTGCTGGGCAC--TGGGCATTGGAGTT--------GGGG--ATGGCTGCCCCAGCC s rheMac2.chr11 208606 45 - 134511895 ATCACAA-AACAGTGCTGGTGTGCTGGGGAC--TG----------------------------GGCTGCCCCAGCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 238939 63 - 136387465 ATCACCA-AAAAGTGCTAGTGTGCTGGGGAC--TGGGCATTGGAGTT--------GGGG--ATGGCTGCCCCAGCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200548 63 - 135371336 ATCACCA-GAAAGTGCTGGTGTGCTGGGGAC--TGGGCATTGGAGTT--------GGGG--ATGGCTGTCCCAGCC i panTro2.chr12 C 0 C 0 s fr2.chrUn 297634618 52 + 400509343 AACACCACAGaactgc-----tgcaggacac--agaagACAAGATGTTTTGGACAACAG----------------- i fr2.chrUn I 4 I 158 s gasAcu1.chrIX 708971 46 - 20249479 AACACCACAGAACTGC-----TGCAGGAGACGGAGGGGGGAGGATTT--------AGGG----------------- i gasAcu1.chrIX I 4 n 4 s oryLat2.chr1 39113271 59 - 39973033 AACaccacagaactgc-----tgcagaACAC----AGGAGAGGACAC--------ACAGGCGCCGCCGCGTCAGCC i oryLat2.chr1 I 4 I 7157 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=64243.000000 s hg19.chrUn_gl000223 73236 117 + 180455 TCTGTACACGACACCTGGCCTGGTGGATCCAGAGTTAGTCTTGCTGCCCAGCTGCCACTCCAGCCACTCCCTAGACACAATTTTAAATTGTCAGATATACCTTTAGTAAAGCTGAAA s rheMac2.chr11 208651 117 - 134511895 TCTGCACACAACACCTGGCCTGGTGGATCCAGAGTTAGTCTTGCTGCCCAGCTGCCACTCTAGCCACTCCCTAGACACAATTTTAAATTGTCAGATATACCTTTAGTAAAGCTGAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 239002 117 - 136387465 TCTGTAAACGACAGCTGGCCTGGTGGATCCAGAGTTAGTCTTGCTGCCCAGCTGCCACTCTAGCCACTCCCTAGACACAATTTTAAATTGTCAGATATACCTTTAGTAAAGCTGAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 200611 117 - 135371336 TCTGTACACGACACCTGGCCTGGTGGATCCAGAGTTAGTCTTGCTGCCCAGCTGCCACTCCAGCCACTCCCTAGACACAATTTTAAATTGTCAGATATACCTTTAGTAAAGCTGAAA i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e fr2.chrUn 297634670 158 + 400509343 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64153704 26 - 94057673 I e canFam2.chr26 3198353 551 + 42029645 I a score=108823.000000 s hg19.chrUn_gl000223 73353 171 + 180455 aaacaattccagaggaattaaaaggaggaaaattttctat------ttattaaatagc----ataaagataccaaaattgatgaatgtatgatttgaaaagaaacctc-----aaacttaa----gattatgcaagcatcaatattgagaagttattaacagagagaagctggcagtgca----ttgctaaaat s canFam2.chr26 3198904 135 + 42029645 -AAAACTTCCAGAGGAAATAGGAGGAGGAA-----------------TGTTAG---------ATAAAG--ACCCAAATCGACA------TGGTTTGA--------CTCAGACAAAACCTGATCATGACGACCAGCCCTGAAATCCTAAGAAATTATCAAC--AGAGGAGCTGGTGATACC-------------- i canFam2.chr26 I 551 C 0 s equCab2.chr8 64153730 180 - 94057673 AAATAGttccagaggaattggaagaaggaa-actttctat------ttattaagttgccatcataaagacaccaaaatcgacaaatgtgtgatttgaaaaggatgctcagacaaaacttgattgtgactacacatgcaaaaatactgagaaactaacag---agagaagctggcaatacc----ttacagaaat i equCab2.chr8 I 26 C 0 s panTro2.chr12 200728 171 - 135371336 aaacaattccagaggaattaaaagaaggaaaattttctat------ttattaaatagc----ataaagataccaaaattgatgaatgtatgatttgaaaagaaacctc-----aaacttaa----gattatgcaagcatcaatattgagaagttattaacagagagaagctggcagtgca----ttgctaaaat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 239119 176 - 136387465 AAACAATTCCAGAGGAATTAAAAGAAGGAAAATTTTCTAT------TTATTAAATAGC----ATAAAGATACCAAAATTGATGAATGTATGATTTGAAAAGAAACCTCAGACAAAACTTAA----GATTATGCAAGCATAAATATTGAGAAGTTATTAACAGAGAGAAGCTGGCAGTGCA----TTGCTAAAAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 208768 176 - 134511895 acacaattccagaggaattaaaagaaggaaaattttctat------ttattaaacagc----ataaagataacaaaattgatgaatgtatggtttgaaaagaaacctcagacaaaacttaa----gattatgcaagcataaatattgagaagttattaacagacagaagctggcagtgca----ttgcaaaaat i rheMac2.chr11 C 0 C 0 s fr2.chrUn 297634828 108 + 400509343 -----------------------------CAACCTTCTGTCCTACATCATCACATCTC----AAATTGACGGCAATATTCATAAAT------------------CTTC-----AAAC---A----GATTC-------------------AAGccataaaa--aacaaagattgCAGCCTCCCGTTTGTTAAA-- i fr2.chrUn I 158 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=46970.000000 s hg19.chrUn_gl000223 73524 122 + 180455 atactataagcaaatggattctattctagaaacacaaagttgatcagaaaatctactaatattaccatcgcagtaag-------t-taaggggaaaataaaatcacttcaattacatga----aaaaattaatt s panTro2.chr12 200899 122 - 135371336 atactataagcaaatggattctattctagaaacacaaagttgatcagaaaatctactaatattaccatcgcagtaag-------t-taaggggaaaataaaatcacttcaattacatga----aaaaatcaatt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 239295 119 - 136387465 ATACTATAAGCAAACGGATTCTGTTCTAGACACACACAGTTGATCAGAAAAC---CTAATATTACCATCGCAGTAAG-------T-TAAGGGGAAAATAAAATCACTTCAATTACATGa----aaaaattaact i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64153910 122 - 94057673 acactataaccaagtggattctattctagaaatataaggatgatcaggatatccgttaatattaccatatcaataag-------tataagggaaaaatatag-----tcaataagatgaaaagaaaattttaaa i equCab2.chr8 C 0 I 2 s canFam2.chr26 3199039 78 + 42029645 -------------------------------------------TCGGGATATTGGTTAATATT-CCCCATCAGTAAG-------T-CAAAGGGAAAATATAATCACCTCAATAAGATGA----AACATTTTATT i canFam2.chr26 C 0 I 179 s fr2.chrUn 297634936 100 + 400509343 ----TATAAGAATTTGTTATTCACTGGGGAAACTC----------------TCCACTGATATG-TAACATTAGTAAAACGTTCCT-TAAGGAGACAATAA--------CAGCAGAATGC----AAATATAAAGT i fr2.chrUn C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=20807.000000 s hg19.chrUn_gl000223 73646 72 + 180455 ttaaaatatat-tttagattttataaa----aat--agcaaatttg------------tttgcta-----ccttaacatgat------------aaaaaaagaaaacc s panTro2.chr12 201021 84 - 135371336 ttaaaatATAT-TTTAGATTTTATAAA----AAT--AGCAAATTTG------------TTTGCTA-----CCTTAACATGATaaaaaaaaaaaaaaaaaaaaaaaaCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 239414 70 - 136387465 ttaaaatatat-tttagattttataaa----aat--aGCAAATTTG------------TTTGCTA-----CCTTAACATGAT------------TTAAAAAAACA--C i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64154034 78 - 94057673 taaaaatacat-cctaga--ttttaaaaaataat--aataaattag---aaaactttgtatgcta-----ctttaacgtgat------------gaaaatata----- i equCab2.chr8 I 2 C 0 s canFam2.chr26 3199296 77 + 42029645 TAGAAATGCAT-TCTAGAGCTTTTAAA----AAT--AACAAATTAGGAAAAAAAATCATTTGCTG-----ATTTAACAT--T------------TAAAATATA----- i canFam2.chr26 I 179 C 0 s fr2.chrUn 297635036 79 + 400509343 TAAAAGTACATATATAGA-TTTATACT----GATGGAGCAGACATG------------TTGTCTGGACCCCCCTGGTGTGAT------------ATAGACACTGGATC i fr2.chrUn C 0 I 12 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=74689.000000 s hg19.chrUn_gl000223 73718 71 + 180455 ataggattttaaccgtaaagccagtgtgcttcttaatggtagaatattaggaggagttaggaacaagatat s papHam1.Contig257332 1 71 - 320 ATAGGATTTTAACCATAAAGCCAGTGTGCTGCTTAATGGTAGAACCTTAGGAGAAGTTAGGAACAAGGTAT i papHam1.Contig257332 N 0 C 0 s panTro2.chr12 201105 71 - 135371336 ATAGGATTTTAACCGTAAAGCCAGTGTGCTTCTTAATGGTAGAATATTAGGAGGAGTTAGGAACAAGATAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 239484 71 - 136387465 ATAGGATTTTAACCGTAAAGCCAGTGTGTTTCTTAATGGTAGAACATTAGGAGGAGTTAGGAACAAGATAT i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64154112 67 - 94057673 ----gacttgaaccggaaagttagtatgctgcttaatggtggaacattATGAGGACTTAGGAGCAAGATAT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3199373 67 + 42029645 ----GACATTAATTATAAAGCTGGTGTGCTGCTTAATATTGGAACATCAGGAGGACTTCATGACAGGATAT i canFam2.chr26 C 0 C 0 s fr2.chrUn 297635127 71 + 400509343 ACTGGATTCTGTGCAGAATACCAGTGTGGGGTGTGGTGTTTGATTATGAACAGCTGTGAAGGAAAAGCTGT i fr2.chrUn I 12 N 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=93786.000000 s hg19.chrUn_gl000223 73789 143 + 180455 ggatactgacttacatcaggatttttaaaaattggactAATATTAGAAATGCAGAAACTGCAGATAGCGAGTTTCAGTGGTTACTGCTG----ACACACATTTCTATA-CATTGGG-GGG---TTGTTTCTTAAGTTGTCCATTTTTTTTT---T s papHam1.Contig257332 72 146 - 320 GGATACTGACTTAGATCAGGCTTTTTAAAAATTGGACTGATACTAGAAATGCAGAAACTGCAGATACTGAGTTTCAGTGGTTACTGCCGACGTACACACATTTCTGTACCACTGGG-GGG---TTGTTTCTTAAGTTGTCCA--TTTTTTT---T i papHam1.Contig257332 C 0 C 0 s panTro2.chr12 201176 141 - 135371336 GGATACTGAC--AGATCAGGATTTTTAAAAATTGGACTAATATTAGAAATGCAGAAACTGCAGATAGCGAGTTTCAGTGGTTACTGCTG----ACATACATTTCTATA-CATTGGG-GGG---TTGTTTCTTAAGTTGTCCTTTTTTTTTT---T i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 239555 138 - 136387465 GGATATTGACTTAGATGAGGATTTTTAAAAATTGGACTAATATTAGAAATGCAGAAACTGCAGATAGTGGGTTTCAGTGGTTACTGCCGACATACACACATTTCTATA-CCACTGG-GGG---TTGTTTC-----TTGTCCA----TTTTT---T i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64154179 140 - 94057673 AGATAC---CCAAG-CTAAGA-TTTTAAAACTTGGACTAATATTTGAACTGCAGAACATACAAATAATGTGTTTCATTGATCACTGCAGAAGTATACACATTTCTACA-ccatttg-ggggttttattccataaattgtcag----ttatt---- i equCab2.chr8 C 0 I 2434 s canFam2.chr26 3199440 142 + 42029645 GGATAC---CTGAGACTGGGA-TTTTAAAAATTGGAGTAGTATTTGAAATGCAGAACATATTGGTAATGTATTTTGGTGATTACTGCTGAAGTATATATATTTC-----CCATGAGTGGGGTTTTATTTCATAGATTGTCAA----TTATCCTTT i canFam2.chr26 C 0 I 2640 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_9962 11621 23385 - 51117 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=35032.000000 s hg19.chrUn_gl000223 73932 47 + 180455 TATGCATGGGAGG-CATATGGAAAGACAGAGGTTTGCTGACTTCCGGG s ponAbe2.chr12 239693 47 - 136387465 TAGGCATGGGAGG-CGTATGGAAAGACAGAGGTTTGCTGACTTCTGGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201317 47 - 135371336 TATGCATGGGAGG-CATATGGAAAGACAGAGGTTTGCTGACTTCCGGG i panTro2.chr12 C 0 C 0 s papHam1.Contig257332 218 47 - 320 AATGCATGGGAGG-CATATGGAAAGGCAGAGGTTTGCTGACTTCCAGG i papHam1.Contig257332 C 0 C 0 s micMur1.scaffold_27569 6099 48 - 11810 TATGCACATGAGGCCATATGGAAGGAGAGAGGCTTGCTGACTTCAGGG i micMur1.scaffold_27569 n 23385 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=28300.000000 s hg19.chrUn_gl000223 73979 57 + 180455 AAAAAGGAAATTAAGAAACCAACTTATTAACTGTggctaagtgcagtggctcacacc s ponAbe2.chr12 239740 57 - 136387465 AAAAAGGAAATTAAGAAACCAGCTTATAACCTGTggctaagtgcagtggctcacacc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201364 57 - 135371336 AAAAAGGAAATTAAGAAACCAACTTATTAACTGTggctaagtgcagtggctcacacc i panTro2.chr12 C 0 C 0 s papHam1.Contig257332 265 55 - 320 AAAAAGGAAATTAAGAAACCAGCTTA--ACCTGTGGCTAAGTGCAGCGGCTCACACC i papHam1.Contig257332 C 0 N 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_27569 6147 0 - 11810 C e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=22305.000000 s hg19.chrUn_gl000223 74036 80 + 180455 tgtaatcccagcactttgagaggctgaggcaggaacatcgcttgaggctgggagttcaagaccagcctgggcaacatggc s ponAbe2.chr12 239797 80 - 136387465 tgtaatcccagcactttgagaggctgaggcaggaacactgcttgaggctgggagttcaagaccagcccgggcaacatggc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201421 80 - 135371336 tgtaatcccagcactttgagaggctgaggcaggaacatcgcttgaggctgggagttcaagaccagcctgggcaacatggc i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e micMur1.scaffold_27569 6147 0 - 11810 C e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=8536.000000 s hg19.chrUn_gl000223 74116 41 + 180455 gagactccccatctctacaaaaaaAATTTTGAATTCCAAAA s micMur1.scaffold_27569 6147 10 - 11810 GAGATTT-------------------------------AAT i micMur1.scaffold_27569 C 0 C 0 s ponAbe2.chr12 239877 41 - 136387465 gagactccccatctctacaaaaaaAAATTTGAATTCCAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201501 41 - 135371336 gagactccccatctctacaaaaaaaaTTTTGAATTCCAAAA i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_11817 568 36584 + 44753 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 10237 7621 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=132676.000000 s hg19.chrUn_gl000223 74157 126 + 180455 caagaaatcaacttagcctgggataaggtcttgcctattgccctgcttacagta--agagt-caccctaaaagcaag-ctccaattaggcccctatgaaatgctttatgagcaacccttcctTAAAACTA s turTru1.scaffold_107039 13659 125 + 55530 -AAGAGACCACCTTCACTTGAGATATTGTGTTATCACTGTCTC--CTGAGAGTAAGAGAGTAGCCCGTAGAAGCAAG-CGCCACATGAGCCATTATGAAATGTTA-ACGGGAGACCCTTCCTTAAGACTA i turTru1.scaffold_107039 n 7621 C 0 s vicPac1.scaffold_16107 2695 126 - 8759 CAAGAAACCAACTTAACCTAGGATAGGGTCTTACCAATTGCTCTGCTTAGAGTA--AGAGCAGCCCCTAGAAGCAAG-CTCCAATTGAGCCCTCATGAAATGCTGTATGGGAGA-CCTTCCTTAAAACTA i vicPac1.scaffold_16107 n 36584 C 0 s micMur1.scaffold_27569 6157 123 - 11810 caaaaaaccaacttaacctgagataaggtcttggctgttatcctgcttagaaga--agagtgggccctagaagcagg-ttccaattgaacccctataaaatgctatatgggagac----TCTTAAGACTA i micMur1.scaffold_27569 C 0 I 1026 s ponAbe2.chr12 239918 126 - 136387465 caagaaatcaacttagcctgggataaggtcttgcctatcgccctgcttagaata--agagt-caccctagaagcaag-ctccaattaggcccctataaaatgctttatgagcaacccttccttaaaacta i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201542 126 - 135371336 caagaaatcaacttagcctgggataaggtcttgcctattgccctgcttacagta--agagt-caccctaaaagcaag-ctccaattaggcccctatgaaatgctttatgagcaacccttcctTAAAACTA i panTro2.chr12 C 0 C 0 s choHof1.scaffold_109020 485 122 + 5506 --agaaactaacttaacctggGACAGAGCATTTTCAATTGCACTGCTTACAGTA--AGAATAAACCCTATAAGCAAGACTCCAGTTGAGCCTTTGTGAAATATAT----GGAGCCCTTTCCTTAACACTA i choHof1.scaffold_109020 N 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=55398.000000 s hg19.chrUn_gl000223 74283 68 + 180455 AATTTTGTTAAAATTCCTAAGACAGTCATATTGTAAAAGAACTAGATACCAAAAAATATGTAGAGTCT s panTro2.chr12 201668 68 - 135371336 AATTTTGTTAAAATTCCTAAAACAGTCATATTGTAAAAGAACTAGATACCAAAAAATATGTAGAGTCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 240044 68 - 136387465 aattttgtTAAAATTCCTAAAACAGTCATATTGTAAAAGAACTAGATACCAAAAAATATGTACAGTCT i ponAbe2.chr12 C 0 C 0 s vicPac1.scaffold_16107 2821 68 - 8759 AGTTTTATTGCAGTCTTGAAACTGATCATATTATAAAAGAATTACATACTATAAAATATGCATAGTTT i vicPac1.scaffold_16107 C 0 I 207 s turTru1.scaffold_107039 13784 61 + 55530 AGTATTATTGCTGTCTTGAAAGTGATCTCATTGTAAAAGAACTAGATACTATAAAATGTGT------- i turTru1.scaffold_107039 C 0 C 0 s choHof1.scaffold_109020 607 68 + 5506 AGTTTTATTGTAATCTAGAAAGCAATCATATTGTAAAAGAACTAGATACGGTAAAATATATACAATCT i choHof1.scaffold_109020 C 0 I 52 e dasNov2.scaffold_7587 65568 8382 + 154172 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=42075.000000 s hg19.chrUn_gl000223 74351 149 + 180455 ggccaggcacagtggctcaggcctgtaatcccagcacttggggaggccaaggcgggtaggtcatgaggttaggagttcaagaccagtctggccaacatagtgaaaccctgtctctactaaaaatacaaaaaattagccagttgtggtgg s panTro2.chr12 201736 149 - 135371336 ggccaggcacagtggctcaggcctgtaatcccagcacttggggaggccaaggtgggtaggtcatgaggttaggagttcaagaccagtctggccaacatagtgaaaccctgtctctactaaaaatacaaaaaattagccagttgtggtgg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 240112 149 - 136387465 ggccaggcacagtggctcaggcctgtaatcccagcacttggggaggccaaggtgggtaggtcatgaggttaggagttcaagaccagtctggccaacatagtgaaaccctgtctctactaaaaatacaaaaaattagccaggtgtggtgg i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 13845 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 675 52 + 5506 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=10275.000000 s hg19.chrUn_gl000223 74500 49 + 180455 tgtgcacttgtaatcccagctactcaggaggctgaggcaggaaaatcgt s ponAbe2.chr12 240261 49 - 136387465 tatgcacctgtaatcccagctactcgggaggctgaggcagaaaaatcat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201885 49 - 135371336 tgtgcacttgtaatcccagctactcaggaggctgaggcaggaaaatcgt i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_64398 8791 19 + 10051 tgaacagttataatactat------------------------------ i tarSyr1.scaffold_64398 N 0 I 21 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 13845 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 675 52 + 5506 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=43785.000000 s hg19.chrUn_gl000223 74549 211 + 180455 gtgaaccc-----gggaggtggagattgcagtgaacagagatcacgccattgcactccaacccagccaacagtgtaag------actccatctaaaatatatata-tataatatatataaatatctaaaatatatataaatatgtattatttatatatattaatatatatTTAAAATGATCTTATCC----GTTATTTTATCCATCCAaaataaataaataaataaa s ponAbe2.chr12 240310 211 - 136387465 gtgaaccc-----gggaggtggaggttgcagtgaacagagatcacgccattgcactccaacccagctgacaatgtgag------actccatctaaaatatatatattat-atatataaaaatatctaaaatatatataaa----tattatttatacatatttatatatatTTAAAATGATCCTATCCATCTATTATTTTATCCATCCaaaataaataaataaatata i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 201934 211 - 135371336 gtgaaccc-----gggaggtggagattgcagtgaacagagatcacgccattgcactccaacccagccgacagtgtaag------actccatctaaaatatatata--at-atatatataaatatctaaaatatatataaatatgtattatttatatata--aatatacatTTTAAATGATCTTATCCATCTGTTATTTTATCCATCCaaaataaatacataaataaa i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_64398 8831 153 + 10051 gggaaactgtcggggggggtggAATTGGCAGTTGAAGAAAA---------------------CTGTTAAGGGAGGGAGGGGCATACTGCATC---AACAAGCATA-CCT-GCATA-ATCAACATTT---GTATACCTAACCCTGAATCAT----------------------------ACCCTACat--------ttttat--------aataaaaaaagaaataaa i tarSyr1.scaffold_64398 I 21 N 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 13845 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 675 52 + 5506 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=5954.000000 s hg19.chrUn_gl000223 74760 51 + 180455 tatatatataTacacacacacacacacacacac-acacacacacacacacac s panTro2.chr12 202145 33 - 135371336 tatatatatat------------------acac-acacacacacacacacac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 240521 42 - 136387465 tatacacacac----------acacacacacacaacacacacacacacacac i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 13845 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 675 52 + 5506 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=15927.000000 s hg19.chrUn_gl000223 74811 79 + 180455 acaGTCTCTGGGTGCAACTTTGTTCC-----TATAGATGTTCTTTGTTCCTACAGATGTTCTTTGTTCCTATAGATATTCTTTG s turTru1.scaffold_107039 13845 59 + 55530 ACAGTCCCTTGGTGCTATCTTATTTTCTGTATAT-------------------AAATATGCCTCTAGCCAATTAACAT------ i turTru1.scaffold_107039 C 0 C 0 s panTro2.chr12 202178 60 - 135371336 acaGTCTCTGGGTGCAACTTTGTTCC-----TAT-------------------AGATGTTCTTTGTTCCTATAGATATTCTTTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 240563 60 - 136387465 acaGTCTCTGGGTGCAACTTTGTTCC-----TAT-------------------AGATGTTCTTTGTTCCTATAGGTATTCTTTG i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 675 52 + 5506 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=35332.000000 s hg19.chrUn_gl000223 74890 66 + 180455 ttcctatagatgttcttttacaatgccctagcccaggagaccaagtaccccttcaaatctggaaaa s ponAbe2.chr12 240623 66 - 136387465 ttcctatagatattcttttacaatgccttagcccaggagaccaagtaccccttcaaatctggaaaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 202238 66 - 135371336 ttcctatagatgttcttttacaatgccctagcccaggagaccaagtaccccttcaaatctggaaaa i panTro2.chr12 C 0 C 0 s turTru1.scaffold_107039 13904 65 + 55530 TTCCTGCAGACATTCCTGTGCACTGCATAAGCCCAGGGAATTGGGT-CCTCCTCAAACTTGGAAAA i turTru1.scaffold_107039 C 0 C 0 s choHof1.scaffold_109020 727 64 + 5506 TTCCCACAAATGTACCCCTCCGTTGCATAAATCCAGG--ACTGGGTGCTTCTTAAAACCTGGAGAA i choHof1.scaffold_109020 I 52 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 6280 1026 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 208944 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=255847.000000 s hg19.chrUn_gl000223 74956 318 + 180455 atcacaaccctgagcaccaaatacagcccaaatggaatggacccttatgaagttctcctggtaactcattcattcataaagttaaaaggagtcaagccctgggttcatcaatcaccagtaaagattgtacctgtccactgcactccagcctgggtgacagagcaagatcccatctccaataaaaaaGTAGTATGTGATCATATTTAAAACTCTCTGCA-ACCCGTCAT------TACACAGCTTACACTTACCACAGACAACAGGAAGCAGTAGGGCCAAGTCATCCAAACCCCAAATGGCTGTAGAAGCCCA-AACTAACTTCTC s panTro2.chr12 202304 318 - 135371336 atcacaaccctgagcaccaaatacagcccaaatggaatggacccttatgaagttctcctggtaactcattcattcataaagttaaaaggagtcaagccctgggttcatcaatcaccagtaaagattgtacctgtccactgcactccagcctgggtgacacagcaagatcccatctccaataaaaaaGTAGTATGTGATCATATTTAAAACTCTCTGCA-ACCCGTCAT------TACACAGCTTACACTTACCACAGACAACAGGAAGCAGTAGGGCCAAGTCATCCAAACCCCAAATGGCTGTAGAAGCCCA-AACTAACTTCTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 240689 319 - 136387465 atcacaaccctgagcaccaaatatagcccaaatggaatggacccttataaagttctcctggtaactcattcattcataaagttaaaacgagtcaagccctgggttcaTGAATCaccagtaaagattgtacctgtccactgcactccagcctgggtgacagagcaagaccccatctccaataaaaaaGTAGTATGTGATCATATTTAAAACTCTCTGCA-ACCCGTCAT------TACACAGCTTACACTTACCACAGACAACAAGAAGCAGTAGGGCCAAGTCATCCAAACCCCAAATGGCTGTAGAAGCCCACAACTAACTTCTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 208944 319 - 134511895 atcacaaccctgaggaccaaatACAGCCCAAATGGAATGGACCCTTCTGAAGTTCTCCTGGTAACCCATTCATTCATAAAGTTAAAAGGAGTCAAGCCCTGGGTTCATCAATCaccagtaaagattgttcctgtccactgcactccagcctgggtgacagagcaagaccccatctccaataaaaaaGTAGTATCTGATAATATTTAAAACTCTCCTCA-GCCCCTCAT------TACACAGGTCACACTTACCACAGACAACAGGAAGCAGTAGGGCCAAGTCATCCAAACCCCAAATGGCTGTAGAAGCCCACAACTAATTTCTC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_27569 7306 244 - 11810 -----------------CATATATAGCCCAAATGGAATAGACCC-TATGAAATTCTCCTGGTGACTCATCCACCTGTAGAGTTCAAAGGAATTAAGCCCTAGGTTCACTATTCATGAGTAAAGATAGTACCTGT---------------------------------------------------------------TAATAGTCAAGACTCTCCTTG-CCCCTTTATAATCCCCACACAGGTTAAGCTTATTGTGGGCAACAGGAAGTAAGAGGGCTGAGTCATTCTAATACCAGATGGCTATGTAAACCTACAACTGATTTCTC i micMur1.scaffold_27569 I 1026 C 0 s turTru1.scaffold_107039 13969 262 + 55530 ATGACTGCCCTGAGGATCAACTGCAACCCAAGTGGATTGGAGCC-TATGAAGTCCTTCTGGTTACACATTCTTCAGTAGAGCTGAAAGGAGTTAAACCTTGGATACACCCCTCCAGAGTAAAAATAGTACCCAT---------------------------------------------------------------TTCTAACCAGCACCCCCCTTGTCCCCTTTACAGTTCCCAAACAGGGCACGCTCTCCATGGACAGGAGGAAGTAGGAGGACCCAACCTTACTAACACCAGAGGGGCCTGGAAACCCACTACTGATTTCTC i turTru1.scaffold_107039 C 0 C 0 s choHof1.scaffold_109020 791 225 + 5506 ATCGTCACCCAGAAGATCGATTATAACCTTAATGGAATAGGCTT-TATGAAGTTCTGCTAGTTTCTCACTCTTTTGTTAGGTTACAGAGTATGAAACTGCAGATTCACCATTCCCAAGTAAAACTAGCACCTGCCAGTCG-----------------------------------------------------------------ATCAATCTATGAG-AAC------------CAGATGGAAGAAAATCTCCATGAACAACAAGAGTCAGCAAGACCAAACCATCTGAATACTGAATG----------------------TCCTC i choHof1.scaffold_109020 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=13382.000000 s hg19.chrUn_gl000223 75274 37 + 180455 CACCCAGGAATACACTTGTGAGCCCCTAACTGATCAC s ponAbe2.chr12 241008 37 - 136387465 CACCCAGGAATACACTTGTGAGCCCCTAACTGATCAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 202622 37 - 135371336 CACCCAGGAATACACTTGTGAGCCCCTAACTGATCAC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_27569 7550 37 - 11810 CACCTAGGAATAAGCTTGTGAACCCTGAAATGATCAC i micMur1.scaffold_27569 C 0 I 16 s choHof1.scaffold_109020 1016 5 + 5506 -------------------GAATC------------- i choHof1.scaffold_109020 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 14231 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 209263 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=12146.000000 s hg19.chrUn_gl000223 75311 50 + 180455 CCAGGAATACA-TTCGTGAGCCCCTAACTGATCACCCAGGAATACATTCGT s ponAbe2.chr12 241045 51 - 136387465 CCAGGAATACACTTTATGAGCCCCTAACTGATCACCCAGGAATACACTTGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 202659 50 - 135371336 CCAGGAATACA-TTCGTGAGCCTCTAACTGATCACCCAGGAATACATTCGT i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 2889 207 - 8759 I e micMur1.scaffold_27569 7587 16 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 14231 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39113330 7157 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 1021 0 + 5506 C e rheMac2.chr11 209263 0 - 134511895 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=37399.000000 s hg19.chrUn_gl000223 75361 102 + 180455 GAGCCCCTAACTGATCACCCAGGAATACATTCGTGAGCCCCTAACTGATCACCCA-GGAATACACTTGTGAGCCCCTAACTGATCTTCAGTTACTTTTCAGAA s panTro2.chr12 202709 102 - 135371336 GAGCCCCTAACTCATCACCCAGGAATACATTCGTGAGCCCCTAACTGATCACCCA-GGAATACACTTGTGAGCCCCTAACTGATCTTCAGTTACTTTCCAGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 241096 102 - 136387465 GAGTCCCTAACTGATCACCCAGGAATACACTTGTGAGCCCCTAACTGATCACCCA-GGAATACATTTGTGAGCCCCTAACTGATCTTCAGTTACTTGTCAGAA i ponAbe2.chr12 C 0 C 0 s choHof1.scaffold_109020 1021 64 + 5506 -----------------CCCCTGAGTAC----------------------ATCTACAAAATACTCATGTGAGCCCATAACTGACCTAAAACTACTCTTTGAAA i choHof1.scaffold_109020 C 0 I 1735 s oryLat2.chr1 39120487 82 - 39973033 GATTCCATAAATGATAAACCATAAATCA------------ATGTCTGATCATACA-GG--TTCACCCGATAAC---TAACTACTTTTGGACTTTTCATCA--- i oryLat2.chr1 I 7157 C 0 s rheMac2.chr11 209263 53 - 134511895 -------------------------------------------------CACCCA-GGAATACACTTGTGAACCCCTAACTGATCTTCAGGTACTTTTCAGGa i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_107039 14231 53 + 55530 -----------------------------------GGCCCCTAAT---------------TACACTTGTAAACCCTTAACTGAACTTAAGTTACTTTTCAAAT i turTru1.scaffold_107039 C 0 C 0 s vicPac1.scaffold_16107 3096 60 - 8759 ----------------------------ATTTCTCAGCCCCTAAT---------------TACAGTTGTAAACTCTTAACTGTCTTTAAATTACTTTCCAAAA i vicPac1.scaffold_16107 I 207 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e micMur1.scaffold_27569 7587 16 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=28673.000000 s hg19.chrUn_gl000223 75463 89 + 180455 AAA---------AACAAAAGACTGAAAGGGCTCT-TGGATCCCCAG--ATAAATGAAAA------GCCATTTATCCATATTTTCATTCCTTTTAGAGTCTAAAACCA s panTro2.chr12 202811 89 - 135371336 AAA---------AACAAAAGACTGAAAGGGCTCT-TGGATCCCCAG--ATAAATGAAAA------GCCATTTATCCATATTTTCATTCCTTTTAGAGTCTAAAACCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 241198 86 - 136387465 AAA------------AAAAGACTGAAAGGGCTCT-TGGATCTCCAG--ATAAATGAAAA------GCCATTTATCCATATTTTCATTCCTTTTAGAGTCTAAAACCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 209316 98 - 134511895 aaaaaaaaaaaaaaaaaaaaaGTGCAAGGGCTCT-TGGATCTCCAG--ATAAAGGAAAA------GCCATTTATCCATATTTTCATTCCTTTTAGAGTCTAAAACCA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_27569 7603 64 - 11810 AAA---------AA-ATAAGATAGAAAGGGCTCC-CGGATCTC------TGATTATAAA------GCCATTCCT--------------------GTATCTAAAACCA i micMur1.scaffold_27569 I 16 C 0 s vicPac1.scaffold_16107 3156 70 - 8759 AGA---------AACAGGACAGCTAAGACCCACC-TTGGCC-------AGGAAGAGAAG------ACTGTTTCTCCCCA--------------AGAGTCTAGACCAG i vicPac1.scaffold_16107 C 0 C 0 s turTru1.scaffold_107039 14284 42 + 55530 AGA---------AACAGGACAGCTAAGTCTCCAC-CTGGTC-------AGGAAGAGAAG------------------------------------------------ i turTru1.scaffold_107039 C 0 C 0 s oryLat2.chr1 39120569 95 - 39973033 ------------AATAATGGTTTGAACAAACTCTCCTCTTCTTCAGGCATAAATTTAAGTGACCTGTACTTTATCCACCTCTTCGTGCTTCTTGGAGACTAGAAACA i oryLat2.chr1 C 0 n 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 1085 1735 + 5506 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=21998.000000 s hg19.chrUn_gl000223 75552 32 + 180455 GCCTCTGCCTGATCAAACTAGAAGGCCAGAAA s panTro2.chr12 202900 32 - 135371336 GCCTCTGCCTGATCAAACTAGAAGGCCAGAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 241284 32 - 136387465 GCCTCTGCCTGATCAAACTAGAAGGCCAGAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 209414 32 - 134511895 GCCTCTGCCTGATCAAACTAGAGGGCCAGAAG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_27569 7667 19 - 11810 GTCTCTGCCTGATCAGACT------------- i micMur1.scaffold_27569 C 0 n 0 s vicPac1.scaffold_16107 3226 32 - 8759 GCCTATATAAATCCAAATTAAATCACTAAAAA i vicPac1.scaffold_16107 C 0 I 699 e dasNov2.scaffold_7587 65568 8382 + 154172 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_107039 14326 0 + 55530 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 1085 1735 + 5506 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=103893.000000 s hg19.chrUn_gl000223 75584 194 + 180455 CAGAGGGCAGCT--GAAGGAAACAGCTCACTCAAGATGCC--AACCAGGC---------------CTCTGTT--------------------CATGCCATCAT-----------GGATAAGATCTATTTTTGAGGGTCTAATTAAGTTAAGAACTATAATTGTATGTATGTTGGGATTCCTTTTCCTTCTTGTCAAG----GTACAGATGGAGCAGAGCTATCTTGTATGTCAGTAG-------CCCCACTCA------------------------------------------------------------------------TG s turTru1.scaffold_107039 14326 321 + 55530 ACGAGGACATCTCGAAAGTAGACAGCTCCACCCAGAAGTCTGGACCAGGCTGATATAAATCCAAATTCAGTCACTAAGAATGTTAAAAATAACATGTTTTCACTGGTTCCCAAAGAATAAGTTCTGTTTTTGGAGGACTGTTAAAATTAGGAATCATAGTTCTGTGTATCATGGGGTTAATCTTTTTACTCACCAAATTTTTTACTTATTG------TCTATCTCATATATTTAAAAAGGCCTCCCCCACTCACAAGTTGATTGCCCAAGACTTAAGCGTTCAGAGTGGGACTCGTGAATATTTACAATCAAGTGCAAAAACAATTT i turTru1.scaffold_107039 C 0 C 0 s rheMac2.chr11 209446 194 - 134511895 CAGATGGCAGCT--GAAGGAAACAGCTCACTCAAGATGCC--AAGCAGGC---------------CTCTGTT--------------------AATGCCATCAC-----------GGATAAGATCTATTTCTGAGGGTCTAATTAAGTTAGGAACTATAGTTGTATGTATGTTGGGATTCGTTTTCCTTCTTGTCAAG----GTACAGATGGAGCAGAGCTATCTTGTATGTCAGTAG-------CCCCACTCA------------------------------------------------------------------------TG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 241316 194 - 136387465 CAGATGGCAGCT--GAAGGAAACAGCTCACTCAAGATGCC--AACCAGGC---------------CTCTGTT--------------------CATGCCATCAT-----------GGATAAGATCTATTTTTGAGGGTCTAATTAAGTTAGGAACTATAATTGTATGTATGTTGGGATTCCTTTTCCTTCTTGTCAAG----GTACAGATGGAGCAGAGCTATCTTGTATGTCAGTAG-------CCCCACTCA------------------------------------------------------------------------TG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 202932 194 - 135371336 CAGAGGGCAGCT--GAAGGAAACAGCTCACTCAAGATGCC--AACCAGGC---------------CTCTGTT--------------------CATGCCATCAT-----------GGATAAGATCTATTTTTGAGGGTCTAATTAAGTTAGGAACTATAATTGTATGTATGTTGGGATTCCTTTTCCTTCTTGTCAAG----GTACAGATGGAGCAGAGCTATCTTGTATGTCAGTAG-------CCCCACTCA------------------------------------------------------------------------TG i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 65568 8382 + 154172 I e vicPac1.scaffold_16107 3258 699 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_109020 1085 1735 + 5506 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=18058.000000 s hg19.chrUn_gl000223 75778 32 + 180455 CATTCTTTGTACTCAGACCTGCGTGACTTGAA s panTro2.chr12 203126 32 - 135371336 CATTCTTTGTACTCAGACCTGCGTGCCTTGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 241510 32 - 136387465 CATTCTTTGTACTCAGACCTGCGTGCCTTGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 209640 32 - 134511895 CATTCTTGGTACTCAGACCTGCGCGCCTTGGA i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_107039 14647 32 + 55530 CATTCCTCTTATAAAAATCTATGCCCCTTCTC i turTru1.scaffold_107039 C 0 C 0 s dasNov2.scaffold_262 321605 31 + 328232 CATCC-TCCGCCCCATATCTTCATCCTTTCTC i dasNov2.scaffold_262 n 8382 C 0 s choHof1.scaffold_109020 2820 32 + 5506 CATTCATCAAACCTTGAACTATGTCTCCAATG i choHof1.scaffold_109020 I 1735 C 0 e vicPac1.scaffold_16107 3258 699 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=41546.000000 s hg19.chrUn_gl000223 75810 22 + 180455 AGCATGAAGTAGCTAGAATGGT s rheMac2.chr11 209672 22 - 134511895 AGCATGAAGTAGCTAGAATGGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 241542 22 - 136387465 AGCATGAAGTAGCTAGAATAGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 203158 22 - 135371336 AGCATGAAGTAGCTAGAATGGT i panTro2.chr12 C 0 C 0 s ochPri2.scaffold_16688 1920 22 - 59574 AGTATGAAGCAGTCAGAGCAGC i ochPri2.scaffold_16688 N 0 C 0 s turTru1.scaffold_107039 14679 22 + 55530 AGCAGGAAGCAGCTAGAGCGGT i turTru1.scaffold_107039 C 0 C 0 s vicPac1.scaffold_16107 3957 12 - 8759 ----------AACTAGAGCAGT i vicPac1.scaffold_16107 I 699 C 0 s dasNov2.scaffold_262 321636 22 + 328232 AGCCTGAAGTAGTCAGAATGGA i dasNov2.scaffold_262 C 0 C 0 s choHof1.scaffold_109020 2852 22 + 5506 AGCAGAAAGAAGCCAGAGCAGT i choHof1.scaffold_109020 C 0 C 0 e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=52795.000000 s hg19.chrUn_gl000223 75832 56 + 180455 CATCACCCCACTTCCCTCAAGATTGAGGAGTGCACA----AAAAGGGGGGTAC-Ctgtaac s rheMac2.chr11 209694 56 - 134511895 CATCACCCCACTTCCCTCAAGATTGAGGAGTGCACA----AAAAGGGGGGTAC-Ctgtaac i rheMac2.chr11 C 0 C 0 s panTro2.chr12 203180 56 - 135371336 CGTCACCCCACTTCCCTCAAGATTGAGGAGTGCACA----AAAAGGGGGGTAC-Ctgtaac i panTro2.chr12 C 0 C 0 s ochPri2.scaffold_16688 1942 46 - 59574 CATCATCCCTGTTCCCTCAGGATTGAGGAGTAACAA----GAAATGTGGG----------- i ochPri2.scaffold_16688 C 0 N 0 s turTru1.scaffold_107039 14701 54 + 55530 CGTTGCCCTATTTCCCTTAAGATTGAGGAATGTCCAAAGTAAAAGAGGGGCAC-C------ i turTru1.scaffold_107039 C 0 n 0 s vicPac1.scaffold_16107 3969 60 - 8759 CATCGCCCTATTTCCCTCAAGATTGAGGGATGTACAGAGGAAAAAGGGAGGAT-TTGAAAC i vicPac1.scaffold_16107 C 0 I 4 s dasNov2.scaffold_262 321658 57 + 328232 CATCATCACAAATCTCTCAAGATAGAGGAATGAACA----CAGATAAGGGGGTACTGTAGC i dasNov2.scaffold_262 C 0 C 0 s choHof1.scaffold_109020 2874 54 + 5506 CACTGCCCCAAATCCCTCAAGATTGAGGGATGTCCA----TAAATAAAAGGAGGGGAC--- i choHof1.scaffold_109020 C 0 N 0 e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=1312.000000 s hg19.chrUn_gl000223 75888 42 + 180455 tgtgggaccagctcaaac-------------------------aaattaacc---atttc--ttaagttg----------tt s rheMac2.chr11 209750 42 - 134511895 tgtgggaccagctcaaac-------------------------aaattaacc---atttc--ttaagttg----------tt i rheMac2.chr11 C 0 C 0 s panTro2.chr12 203236 42 - 135371336 tgtgggaccagctcaaac-------------------------aaattaacc---atttc--ttaagttg----------tt i panTro2.chr12 C 0 C 0 s turTru1.scaffold_98884 7883 82 - 32783 tgcagaaccagaaccaaactggccttttcctgtttctaacaagatactgagttgtttttcagtgaaaatagaataaaccaca i turTru1.scaffold_98884 n 0 C 0 s vicPac1.scaffold_16107 4033 49 - 8759 TGTAAAACACTGACCAACTT-----------------------AAACTGGCTTGGCTTCC--TTAAAATA--------CATT i vicPac1.scaffold_16107 I 4 C 0 s dasNov2.scaffold_262 321715 37 + 328232 TGTAGA-----CTAAAGC-------------------------AAATTTATT---GTTAT--TGTAGTTA----------TT i dasNov2.scaffold_262 C 0 n 0 e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=1139.000000 s hg19.chrUn_gl000223 75930 59 + 180455 gcaggtacaca-------------------cacag----------ccaaaattgcctt-----------------------------------------------ggcacat---gcaatgcaaaaagctttaatttc s rheMac2.chr11 209792 59 - 134511895 gcaggtaaata-------------------cagag----------ccaaaattgcctt-----------------------------------------------ggcacat---gcaatgcaaaaagctttaaattc i rheMac2.chr11 C 0 C 0 s panTro2.chr12 203278 59 - 135371336 gcaggtgcaca-------------------cacag----------ccaaaattgcctt-----------------------------------------------ggcacat---gcaatgcaaaaagctttaatttc i panTro2.chr12 C 0 C 0 s turTru1.scaffold_98884 7965 138 - 32783 gtttatgcacagaggagaagattttgacctcaaacaatatacagaataaaatttcttccctcctcagaacaaaagaaccaagacacaaccagaaactgaatgctggatccctttcagaagttaagagtcctttgccca i turTru1.scaffold_98884 C 0 I 28 s vicPac1.scaffold_16107 4082 73 - 8759 GTTGATGAAC--------------------CAAAC----------CTGGAGTTTCTTTAC--------------------AGAGACAGC------------GCTGTGCACAT---GCAAGACAGGAATCCATGTCTCC i vicPac1.scaffold_16107 C 0 I 181 e dasNov2.scaffold_262 321752 0 + 328232 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=18520.000000 s hg19.chrUn_gl000223 75989 83 + 180455 taaTTGTTATCATCACCAGCCTGAC-----AGGC---CTGCATT--GGCATCATCTGGGTCTAGCTGGA-----------------Aatgcca----------------------------taaaatcttgacccacc s rheMac2.chr11 209851 86 - 134511895 tgaTTGTTACCATCACCAGCCTGGC-----AGGCCAGCTGTATT--GGCATCATCTGGGTCTAGCTGGA-----------------AATGCCA----------------------------TAAAAACTTGACCCACC i rheMac2.chr11 C 0 I 3513 s panTro2.chr12 203337 83 - 135371336 taaTTGTTATCATCACCAGCCTGGC-----AGGC---CTGCATT--GGCATCATCTGGGTCTAGCTGGA-----------------Aatgcca----------------------------taaaaacttgacccacc i panTro2.chr12 C 0 C 0 s turTru1.scaffold_98884 8131 135 - 32783 cacatcttaccataaatggccaagttccaaagcc---ctgcagtcaagaagagtcagggtcaagaagggagaaaactcaactcaccagtgccccctatacaaaccctcttcccttaatccataaaaatttgactgaac i turTru1.scaffold_98884 I 28 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4155 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=35937.000000 s hg19.chrUn_gl000223 76072 165 + 180455 --ccaatcacagagacagatctgagca--ttgcctcttgtctccttgccagttgac-ttggtataaagcttttttttttt-cttcctcaaaagagggaaccataatgttggcttctgtgcatgttgtaaagtaagcctattgctcagtaacaAATATATCTTTCCAtttt----------t s panTro2.chr12 203420 174 - 135371336 --cgaatcacagagacagatctgagca--ttgcctcttgtctccttgccagttgac-ttggtataaagc-tttttttttt-cttcctcaaaagagggaaccataatgttggcttctgtgcatgttgtaaagtaagcctattgctcagtaacaAATGTATCTTTCCATTTTTTAGtttttct i panTro2.chr12 C 0 C 0 s vicPac1.scaffold_16107 4336 150 - 8759 cttggatcgaggagacagatttcagagccttgccttctgtttccttgccagtcgaccttgcaataaagc-------tttc-tttcttcaaaagctagtgtcatagtattggcttctgtgtgcattgggcggcgagccc-ttgctcgataacaGACACAT---------------------- i vicPac1.scaffold_16107 I 181 n 181 s turTru1.scaffold_98884 8266 143 - 32783 cccagaccagggagacagatttgagtg---tgctcttt-tctctttgcaggttggcattgcaataaagc-------ttttattttatcaaaaattgatcccatagtattgacttctatgcttgttgggcagcaagcccattgctcagtaacaGA--------------------------- i turTru1.scaffold_98884 C 0 n 0 e dasNov2.scaffold_262 321752 0 + 328232 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=34846.000000 s hg19.chrUn_gl000223 76237 262 + 180455 tcttttttctttttttttttgagatggagtctc----------gctctgtcacccacgctggagtacagtggc--gcaatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactataggcgcccgccaccactgccagctaa----------ttttttgtatttttagtagagat-ggggtttcaccatgttagccaggatggtctcgatctcatgacctcgtgatccacctgcttcagcctccca s panTro2.chr12 203594 262 - 135371336 ttttttttttttttttttttgagacggagtctc----------gctctgtcacccaggctggagtacagtggc--gcaatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactataggcgcccgccaccactgccagctaa----------ttttttgtatttttagtagagac-ggggtttcaccatgttagccaggatggtctcgatctcatgacctcgtgatccacctgcttcggcctccca i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_118029.1-115246 88436 232 - 115246 tttgtttttctttttgttttgagactaagtctcaaaaggtgagactttgtcaccctgggtagagtgccttggcaggtcactgtacctcacagcaacctcaaactcctgggtttaagtgatccttttgcctcatgctcccaagtatctggggctacaggtatgtgccaccatgtctggttaggttttttttttttcttttctttttagaagagacaggggtcttact------------------------------------------cctgct----------- i otoGar1.scaffold_118029.1-115246 N 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_98884 8409 0 - 32783 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=28022.000000 s hg19.chrUn_gl000223 76499 78 + 180455 atgttagccaggatggtctcgatctcatgacctc--gtgatctacctgcttcggcctcccaaagtgctgggattacaggc s panTro2.chr12 203856 78 - 135371336 atgttagccaggatggtctcgatctcatgacctc--gtgatccacctgcttcggcctcccaaagtgctgggattacaggc i panTro2.chr12 C 0 C 0 s papHam1.Contig169508 26 78 + 392 atgttagccaggatggtctcgatctcctgacctc--gtgatccacccacttcagcctcccaaagtgctgggattacaggc i papHam1.Contig169508 N 0 I 59 s otoGar1.scaffold_118029.1-115246 88668 69 - 115246 --------caggctggtcttgaacttctgagctcaagcaatccatctgccttggctctc---agagctagtattacaggt i otoGar1.scaffold_118029.1-115246 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_98884 8409 0 - 32783 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=6123.000000 s hg19.chrUn_gl000223 76577 60 + 180455 gtgagccaccatgcccggccCATTTTTTAGTTTTTCTTTTACAAACTTTAAAACATTATT s panTro2.chr12 203934 60 - 135371336 gtgagccaccatgcccggccCATTTTTTAGTTTTTCTTTTACAAACTTTAAAACATTATT i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_118029.1-115246 88737 35 - 115246 gtgagccactgcacctggccagtaataaagctttt------------------------- i otoGar1.scaffold_118029.1-115246 C 0 N 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e felCat3.scaffold_2338 5734 2902 - 11443 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_98884 8409 0 - 32783 I e papHam1.Contig169508 104 59 + 392 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=68407.000000 s hg19.chrUn_gl000223 76637 167 + 180455 GTATTCATAATTTTTCAGTTTATATGTGGTTTTTGGAAGATTTATTCCCAGACAGTTCTCATTTTAAATTTAACATTTTATAAGATATATTTCTAAGTAGCTT---ATTTCTATTGCTATAATGAATATGAGGGTTTTT--TATAGTAttttttgttattg-ttgttggttgt s papHam1.Contig169508 163 170 + 392 GTATTCATAATTTCTCAGTTTATATGTGGTTTTTAGAAGATTTATTCCCAGACAGTTCTCATTTTAAATTTAACATTTTATAAGATATATTTCTAAGTAGCTTATCATTTCTATTGCTATAATGAATATGAGGGTTTTT--TATAACAttttttatttgtt-tgttcgtttgt i papHam1.Contig169508 I 59 C 0 s panTro2.chr12 203994 167 - 135371336 GTATTCATAATTTTTCAGTTTATATGTGGTTTTTGGAAGATTTATTCCCAGACAGTTCTCATTTTAAATTTAACATTTTATAAGATATATTTCTAAGTAGCTT---ATTTCTATTGCTATAATGAATATGAGGGTTTTT--TATAGTAttttttgttattg-ttgttgtttgt i panTro2.chr12 C 0 C 0 s felCat3.scaffold_2338 8636 116 - 11443 ----------------------------------------------cccTGATAGTTTTCATTTTAAATTCAACATTGTATCAGATGTATTCCTAAGAAGCTTCTCAATCCTAATGATATAATG-----AAGTTTTTTTCCCCTAGTGTATTTTCTTACTTGCTATT------ i felCat3.scaffold_2338 I 2902 N 0 s turTru1.scaffold_102261 17858 144 + 30858 -----------------------------TTTTTTAAAGATTTATTCCTAGATAGTTCTAATTCTAAATTCAACGTTGTATCAGATGTATTCCTAAGTAGTTTATCATTCCCAGTGATATTATGAAGACAAGCTTTTTTCCTCCAGTATAATTTCTTATTGCCTATTAATTGt i turTru1.scaffold_102261 I 7621 I 1731 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=15202.000000 s hg19.chrUn_gl000223 76804 59 + 180455 ttttgagatggagtcttactctgtcacccaggctgcagtgcaatggcatgatcttggct s panTro2.chr12 204161 59 - 135371336 ttttgagatggagtctcactctgtcacccaggctgcagtgcaatggcatgatcttggct i panTro2.chr12 C 0 C 0 s papHam1.Contig169508 333 59 + 392 ttttgagatggagtcttgctctatcacccaggctggagtgcaatggcacgatctcggct i papHam1.Contig169508 C 0 N 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 18002 1731 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=19927.000000 s hg19.chrUn_gl000223 76863 215 + 180455 caatgcaacctccacctccaggattcaagtgattcttccatctcaacctcccaagcagctgggattacaggcgctcgccaccaagcctagctaatttttttggtacttttgtagagatggggtctcaccatgttggccaggcttgtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaaatgctggaattacaggtgtgagc s panTro2.chr12 204220 215 - 135371336 caatgcaacctccacctccaggattcaaatgattcttccatctcaacctcccaagcagctgggattacaggcgctcaccaccaagcctggctaatttttttggtacttttgtagagatggggtttcaccatgttggccaggcttgtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctggaattacaggtgtgagc i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 18002 1731 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e ponAbe2.chr12 241564 0 - 136387465 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=48449.000000 s hg19.chrUn_gl000223 77078 180 + 180455 cgccacaccctgccTATAGTATGTTTTCTTATTGGAAGTTGGTGGAATCatggactgaatgtgccgcttaagtcatatattgaagccctaacccccagtgttgctgtactgggaagtggaatgtttaataaaataattaaggctaaataaggtcatgagAAgccaggagtgttggctcac s panTro2.chr12 204435 180 - 135371336 cgccacaccctgccTATAGTATGTTTTCTTATTGAAAGTTGGTGGAATCatggactgaatgtgccccttaagtcatatattgaagccctaacccccagtgttgctgtactgggaagtggaatgtttaataaaataattaaggctaaataaggtcatgagAagccaggagtgttggctcac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 241564 180 - 136387465 CGCCACACCCTGCCTATAGTATGTTTTCTTATTGGAAGCTAGTGGAATCacggactgaatgtgccccttaagtcatatattgaagccctaacccccagtgttgctgtactgggaagtgggatgtctaagaaaataattaaggctaaataaggtcatgagAagccaggagtggtggctcac i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 18002 1731 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=136244.000000 s hg19.chrUn_gl000223 77258 1582 + 180455 gcctgtaatcccagcactttgggaggccgaggcaggcggatcacc-tgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtggatgcctgtaatcccagctactcaggaggctgcggcagaagaattgcttgaacccgggaggcagaggttgcagtgagccaactgcgccattgcactccagcctgggcgacaagagcgaaactctt---aaaaaaaaaatgttatgggatctttgaggtgtcacttttcttgtcaggaacctctgtggccagtggcacctttgctcgagttttgctcaggctcgctgggctcattctgcccccttggcctagcatgctgttctcagctcacactaccagcccagatcccacacctctaagggagactgagagtcaggtgtggagcagcaaggggtgtgtgagcaagcatgggattcagccactgcaccgacacactggctgctgctgtggggcaggcagctccaggtgccagcaggggtgccagctctctgtgaggctgcggctggactagggacaccacaagcagcttccatggctggcactggagaatgcggtgttgcccaaaggcttggagaccccaaacaccacaggtccccaaagaggaagtcacagccctggctcaaagatctcccaggtctgggctcctcgaagggctgaagctcttctctttttctcttcacccacaatgtggcaagcaaggggcatgtttcagctgtgtgtgttacagctctttcagccttgccattcagcgggtcctgagttcttgtcctgcgaccagaaagaagtaggtaggcagacaagtgagggtgagcaagacgaaggggagctttattgagtgatagaatagctcagaggagaccgcagggggcagctcctatctgcagctagcgtgtcccccagtgtttagctccttgcacagagggtacctcctctctgcagctggttgtcctgacgagggctcagctctcagcagagaggaggccctagagtgactggctcctctctgcaggcagatggtcccccatctgatcacctctggctgagcctgtggtttgtacgggtctgagagaggaggaagtgcttgccgattggttcatgggcggccatggacggccaggaaaaggaaccataggttcccactccggGTgggaagctggaagagtggctcagtccaagtaccaaggcctcaaaaccagggaagcctgtggcataactcccagttggaggctgaaagcccaggaaccttaggttctgatgttgaagggcagaagaagatgatgtctcagctccaggagagagagaattcacctctcgtcagcctttttcttctgtctgggccctcaacagattggacagtgcccactcacattgggtgagggtgaatcttccttac----ctgattcaaatgccagtctcgtctggaaaaacccccacaggcatagccagaaataatacttcgccagctatctgggtatcctttaatccagtcaagctgacacctaacattaatcatcaca s ponAbe2.chr12 241744 1571 - 136387465 gcctgtaatcccagcactttgggaggcagaggcaggcggatcaccacgaggtcaggggattgagactagcctggccaacatggtgaaaccc-gtctatactaaaaatacaaaaattagccgggcgtggtggtggacgcctgtaatcccagctactcgggaggctgtggcagaagaattgcttgaacctgggaggcagaggttgcagtgagcca---------ttgcactccagcctgggcgacaagagcgaaactctttaaaaaaaaaaaatgttacgggatctttgaggtgtcacttttcttgacaggaacctctgtggccggtggcacctttgctcaagttttgctcaggcccgctgggctcattctgcccccttggcctagcatgctgtgctcagctcacactcccagcccagatcccacacctctaagggagactgagagtcaggtgtggagcagcaagtggtgtgtgagcaagcatgggattcagccactgcacagacatgctggctgctgctgtggggcaggcagctccaggtgccggcaggggtgccagctctctgtgaggctgcagctggactaggcacaccacaggcagcttccatggctggcactggagaatgcggtgttgcccaaaggcttggagaccccaaaaaccacagggccccaaagagggagtcacagccctggctcaaagatctcccaggtctgggctcctcgaagggctgaagctcttctctttttctcttcacccacaatgtggcaagcaaggggcatgtttcagctgtgt----tacagctctttcagccttgccattcagtgggtcctgagttcttgtcctgcgaccagaaagaaggaggtaggcagacaattgagggtgagcaagatgaaggggagctttatcgagtgatagaatagctcagaggagaccgcagggggcagctcctatctgcagctagcgtgtcccccagtgtttcgctcctagcacagagggtacctcctctctgcagctggttgtcctgacgagggctcagctctcagcggagaggaggccctagagtgactggctcctctctgcaggcagatggtcccccgtctgatcacctctggctgagcctggggtttgtacgggtctgagaggggaggaagttcttgccaattggttcacaggtggccatggacggccaggaaaaggaaccataagttcccactctggGTAggaagctggtagagtggctcagtccaagtaccaaggcctcaaaaccagggaagcctgtggcataactctcagttggaggctgaaggcccagggaccttgggttctgctgttgaagggcagaaga---tgatgtctcagctccaggagagtga--attcacctctcgtcagcctttttcttctgtctgggccctcaacagattggacagtgcccactcacattgggtgagggtggatcttccttactctactgattcaaatgccagtctcctgtggaaaaacccccacaggcatacccagaaataatactttgccagctatctgggtatcctttaatccagtcaagctgacacctaacattaatcatcaca i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 18002 1731 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 204615 0 - 135371336 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=16553.000000 s hg19.chrUn_gl000223 78840 77 + 180455 AGATCTTGCTtgcaaataaccacaaacattcctctttctttccagcccatatacctcttaatcttcattccttgtct s ponAbe2.chr12 243315 77 - 136387465 AGATCTTGCTtgcaaataaccacaaatattcctctttctttcaagcccatatacctcttaatcttcattccttgtct i ponAbe2.chr12 C 0 C 0 s turTru1.scaffold_102261 19733 76 + 30858 AGATCTTGCTT-CTAATAACCacaattcttcctctttctttccagtccgtataattcttaattttcgttttttgtct i turTru1.scaffold_102261 I 1731 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 204615 0 - 135371336 C e rheMac2.chr11 209937 3513 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=106736.000000 s hg19.chrUn_gl000223 78917 355 + 180455 --taccacattggttaggactccagctcaacgccggg-agaaataatgag----agagcagtgatctcagcggttcctcattttaattatactgttcgtaaggttctgcttgaagt---atgtttgctgagggg--------------tttataatcgtaaaaaggtgttgcattttattctgagtttcttaagaattttataacaaagaattgttccaatttattgaa------------------------tatttttcttaacctatataggtatttatgtttc-atatcactctatttctacattatttggttaaaatgataaatatataaactttaatattgaattatctttgACATATTTATTTATAAAGTTGAACTAggccagatgcaatggctcat s ponAbe2.chr12 243392 356 - 136387465 --caccacattggttaggactccagctcaatgctggggagaaataatgag----agcgcagtgatctcagcggttcctcattttaattatactgtttgtaaggttctgcttgaagt---atgtttgctgagggg--------------tttatcatcataaaaaggtgttgcattttattctgagtttcttaagaattttataacaaagaattgttccaatttattgaa------------------------tatttttcttaatctatataggtatttatgtttc-atatcactctatttctacattatctggttaaaatgataaatatataaactttaatattgaattatctttgACATATTTATTTATAAAGTTGAACTAggccagatgcagtggctcac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 213450 375 - 134511895 --TACCACATTGGTTACGACTCCAGCTCAATGCCAGGGAGAAATAATGAGAA--AGAGCGAAGATCTCAGTGGTTCCTCATTTTAATTATACTGTTCGTAAGGTTCTGCTTGAAGT---ATGTTTGCTGAGAGG--------------TTTATCATGAGAAAAGGGTGTTGCATTTTATTCTGAGTTTCTTAAGAATTTTATAACAAAGAATTGCTCCAATTTATTGAACATAAACAATTTACTTATATAGTTTATTTTTCTTAAACTATATAAGTACTTATGTTTC-ATATCACCCTATTTCTACATTATCTGGTTAAAATGGTAA----ATAAACTTTAATATTGAATTATCTTTGAC--ATTTATTTATAAAGTTGAACTa-gccaggtgcagtggctcac i rheMac2.chr11 I 3513 C 0 s turTru1.scaffold_102261 19809 308 + 30858 tctagtgcattgattagggtgccagttcaatgcttaagag----tatgagaagtaggggggtcaactcagttgttcctgatt----ttataatgtttctaaagttttactttaagtacgatgtttcctgtaggggttggtagctattctttattatcttaaaaggaagttagtttccattttgagtttgttaaggacttgattattaagaattgctgaaatgtactgaa------------------------tatttttctttagctatataggtagttatgtttctttattaacctattTCTACATTA--AGATTAAAATGATGC-----------------------------------ATACATTAATAAAGT--------------------------- i turTru1.scaffold_102261 C 0 I 36 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 204615 0 - 135371336 C e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=141168.000000 s hg19.chrUn_gl000223 79272 284 + 180455 gcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagttcgagaccagcctagtcaacatggtgaaaccccacctctactaaaaatacaaacattatccaggcgtggtggcaggtgcccgtaatctcagctacttgggaggctgaggcatgataatcacttgaaccttggaggcggaggttgccatgagctgaaattatgccactgcactccagcctgggtgacagaacgagactctgtatcaaaaaaaaaaaaaaaaaaaaa-a s rheMac2.chr11 213825 283 - 134511895 acctgtaatcccagcactttgggaggccaaggcgggca-atcacttgaggtcaagagttcgagaccagcctggtcaacagagtgaaaccccgtctctactaaaaatacaaaaattagccaggc-tggtggcaggtgcctgtaatctcagctacttgggaggctgaggcacaataatcacttgaaccttgaaggcggaggttgctgtgagctgaaatgatgccactgcactccagctggggtggcagagtgagactctgtaccaaaaaaaaaaaaaaaaaaaaaga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 243748 279 - 136387465 gcctgtaatcccagcactttgggaggccaaggcgggcggatcacttgaggtcaggagttcgagaccagcctggtcaacatggtgaaaccccgtctctactaaaaatacaaacattagccaggcatggtggcaggtgcctgtaatctcagctacttgggaggttgaggcatgataatcacttgaaccttggaggcggaggttgccatgagctgaaattatgccactgcactccagcctgggtgacaaaacgagactctgtatcaaaaaaaaaaaaaaaaa------ i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 204615 282 - 135371336 gcctgtaatcccagcactttgggaggccaaggtgggcagatcacctgaggtcaggagttcgagaccagcctagtcaacatggtgaaaccccacctctactaaaaatacaaacattagccaggtgtggtggcaggtgcctgtaatctcagctacttgggaggctgaggcatgataatcacttgaaccttggaggcggaggttgccatgagctgaaattatgccactgcactccagcctgggtgacagaacgagactctgtatcaaaaaaaaaaaaaaaaaaaa--- i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 20117 36 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64154319 2434 - 94057673 I e canFam2.chr26 3199582 2640 + 42029645 I a score=127418.000000 s hg19.chrUn_gl000223 79556 211 + 180455 aaaGTTGAACTATATGAAGTTGTCCTTTTTATGGGTTGGTCCAGTCACTCTTCTACATAACAGAACACCTCAAAATTTAGTGACTTATTATTTTAACTTGATTACCTAAAAAAAGA--GACTTATTggccaggcgcagtggcttacgcctgtaatccc--agcactttgggaggccgaggcaggtggatcatgaggtcaggagttcaagaccagc s panTro2.chr12 204897 208 - 135371336 ---GTTGAACTATATGAAGTTGTCCTTTTTGTGGGTTGGTCCAGTCACTCCTctacataacagaacacctcaaaatttagtgacttattattttaacttgattacctaaaaaaaga--gacttattggccaggcgcagtggctcacgcctgtaacccc--agcactttgggaggccgaggcagatggatcatgaggtcaggagttcaagaccagc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 244027 207 - 136387465 ---GTTGAACTATATGAAGTTGTCCTTTTTGTGGGTTGGTCCAGTCACTCTTCTACATAACAGAACACCTCAAAATTTAGTGACTTACTATTTTAACTTGATTACCTAAAAAAAGA--GACTTAATggccgggtgcggtggctcacgcctgtaa-ccc--agcactttgggaggccgaggcaggtggatcatgaggtcagcagttcaagaccagc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 214108 213 - 134511895 aaaGTTGAACTGTATGAAGTTGTCCTTTTTGTGGCTtggtccagtcactcttctacataacagaacacctcaaaatttagtgacttaTTATTTTAACTTGATTACCTAAAAAAAGAGTGACTTATTggccgggcacggtggctcacgcctctaatccc--agctctttgggaggccaaggcaggtggatcatgaagtcaggagttcaagaccagc i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 20153 122 + 30858 AAGGTTGAACAATATGAAATTGTCC-TTTTGTGGGCTGGTCCAGTTCCTCTTctgcataatagatgac-----aatttaatggcttattat--------------------------------------------------------------atcgcagagtttcctgg-------------------------gtcagaaattcaagacaagc i turTru1.scaffold_102261 I 36 I 53 s equCab2.chr8 64156753 120 - 94057673 AGGGTTGAACAGTATGAAATTATCC-TTTTGCGGGTTGGTCCACTTGCTCTTCTACATAGTAGATCACTTCAACATTTCATGGCTATTTAG--------------------------------------------------------------ATCTC--AGTTTCCTGG-------------------------TTCAG-----CTAGGCAGTC i equCab2.chr8 I 2434 I 3 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e canFam2.chr26 3199582 2640 + 42029645 I a score=86506.000000 s hg19.chrUn_gl000223 79767 209 + 180455 ctgcccaagatggtgaaaccccatctctactaaaaatacaaaaattagccaagtatggtggcgagcacctgtaatcccagctacttgggaggctgaggcagagaactgcttgaacccagtaggaggaggctgcagtgagccaggatcgtgccactgcactccagcctggg--aaagagtgagagtgcatctcaaaaaaaaaaaaaaGTGA-C s panTro2.chr12 205105 210 - 135371336 ctgcccaagatggtgaaaccccatctctactaaaaatacaaaaattagccaagtatggtggcgagcacctgtaatcccagctacttgggaggctgaggcagagaattgcttgaacccagtaggaggaggctgcagtgagccaggatcgtgccacagcactccagcctggg--aaagagtgagactgcatctcaaaaaaaaaaaaaaaaaaac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 244234 209 - 136387465 ctgcccaagatggtgaaaccccatctctactaaaaatacaaaaattagcgaagtatggtggcgggcacctgtaatcccagctacttgggaggctgaggcagagaattgcttgaacctggtaggaggaggctgcagtgagccaggatcgtgccactgcactccagcctggg--aaagagtgagactgcatctcaaaaaaaaaaaaaaGTGA-C i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 214321 202 - 134511895 ctgcccaagatggtgaaaccccatgtctactaaaagtacaaaaattagccaagtatggtggcaggcacctgtaatcccagctactcaggaggct------gagaactgcttgaacc---tgggaggaggttgcagtgagccagaatcgtgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaaaaaaaaa-T i rheMac2.chr11 C 0 I 6 s equCab2.chr8 64156876 83 - 94057673 -----------------------TCTCT---------------------------------CAGGCAGCTGCAAT--CAGCT-----GGCGGCTGG-----------ATTTGGAAC-AGCGGGGTGGGGCTG-----------------------GGACACGTGGCTGGT-----------GGGGGCATCTC-------------------- i equCab2.chr8 I 3 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 20275 53 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e canFam2.chr26 3199582 2640 + 42029645 I a score=49488.000000 s hg19.chrUn_gl000223 79976 66 + 180455 ttattatatctaatagtttcctgggtcagaaattc-aagataggctcagctaggcagctttttctAA s panTro2.chr12 205315 66 - 135371336 ttattatatctaatagtttcctgggtcagaaattc-aagataggctcagctaggcagctttttctaa i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 4 66 + 31489 ttattatatctaatagtttcctgggtcagaaattc-aagataggctcagctaggcagctttttctAA i gorGor1.Supercontig_0000258 N 0 C 0 s ponAbe2.chr12 244443 67 - 136387465 ttattatatctaatagtttcctgggtcagaaattcaaagacaggctcagctaggcagctttttctAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 214529 66 - 134511895 ttatgatatctaatagtttcctgggtcaggaattc-aagacaggctcagctaggcagctttttctAA i rheMac2.chr11 I 6 C 0 s equCab2.chr8 64156959 11 - 94057673 -------------------------TCGGTATTCC-A------------------------------ i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 20275 53 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e canFam2.chr26 3199582 2640 + 42029645 I a score=239298.000000 s hg19.chrUn_gl000223 80042 226 + 180455 GGCTAGATCTAGAACAGAAGGGGCTGGAATGCCTGGGGGTGTTTTAGGCATCTCTCACTCTTGATGTAGTC---------------------TGTGTGTGAGCtagtttgggctttcttactgcagggcag-ctcagggccattggactgcttatatggctgctgaatggttcaagagtgtgaattccagtga-caagatg-gaagctgcatcaccttttatgacctagctttggaagttacacagcttc s panTro2.chr12 205381 226 - 135371336 ggCTAGATCTAGAACAGAAGGGGCTGGAATGCCTGGGGGTGTTTTAGGCATCTCTCACTCTTGATGTAGTC---------------------TGTGTGTGAGCtagttagggctttcttactgcagggcag-ctcagggccattggactatttatatggctgctgaatggttcaagagtgtgaattccagtga-caagatg-gaagctgcatcaccttttatgacctagctttggaagttacacagcttc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 70 226 + 31489 GGCTAGATCTAGAACAGAAGGGGCTGGAATGCCTGGGGGTGTTTNAGGCATCTCTCACTCTTGATGTAGTC---------------------TGTGTGTGAGCtagtttgggctttcttactgcagggcag-ctcagggccattggactgcttatatggctgctgaatggttcaagagtgtgaattccagtna-caagatg-gaagctgcatcaccttttatgacctagctttggaagntacacagcttc i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 244510 226 - 136387465 GGCTAGATCTAGAACAGAAGGGGCTGGAATGCCTGGGGGTGCTTTAGGCATCTCTCACTCTTGATGTAGTC---------------------TGTGTGTGAGCtagtttgggctttcttactgcagggcag-ctcagggccattggactgcttatatggctgctgaacggtgcaagagtgtgaattccagtga-caagatg-gaagctgcatcaccttttatgacctagctttggaagttacacagcttc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 214595 213 - 134511895 GGCTAGATCTAGAAGAGAAGGGGCTGGAATGCCTGGGGGTGCTTTACGCATCCTTCACTCTTGATGTAGTC---------------------TGTGTGTGACCtagtttgggctttcttaccagagggcag-ctcagggtcat-------------tggctgccaaggggtgcaagagtgtgaattccagtga-caaggtg-gaagctgcatcaccttttacgacctagctctggaagttacacagcttc i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 20328 232 + 30858 ggccggagctggaaca-----------------tccgggtggtgtaggcggctcctgctcttgccgtagcctcagccctcttcactggtcttttcatgtgagct-gtttgaacctcatcacagcacagcagcctcagggcagttggactgcttacccggctgctgcaatcttcaccagggagagcttctgagaacaaggtgtgaagctgcatttcctttcatgacctgggcttggaagccacacagctta i turTru1.scaffold_102261 I 53 C 0 s equCab2.chr8 64156970 168 - 94057673 -------------------------------------------------------------------TGTCTCAggcctc------------ttcgtgtgagct-gtctggacttcgtcacagcaggccagcctcagggcagttggacagctgacctggcagctg-agtcttcactgctgagcattcatttgagcgaggtg-gaagctgcagctcctttgatgaccgtgccttgggaaccacacagcttc i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e canFam2.chr26 3199582 2640 + 42029645 I a score=129926.000000 s hg19.chrUn_gl000223 80268 152 + 180455 atctctgctgcattcttttttttctttcttaaatagaaacggggtctcactgtgtttcccaggctggtctcaaactcctgggctcaagcaattttcctgccttggcctcctgaagctctgggatt--acaggtatgagccactgcacctggcct s rheMac2.chr11 214808 151 - 134511895 acctctgctgcattc-ttttttgctttttaaaatagaaacggggtttcacggtgtttcccaggctggtctcaaactcctgggctcaagcaattttcccaccctggcatcctgaagctctaggatt--acaggtgtgagccactgcaccgggcct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 244736 152 - 136387465 atctctgctgcattcttttttttcttttttaaatagaaacagggtctcactgtgtttcccaggctggtctcaaactcctgggctcaagcaattttcctgccttggcctcctgaagctctgggatt--acaggtgtgagccactgcacctggcct i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 296 154 + 31489 atctctgcngcattcttttttttctttcttaaatagaaacggggtctcactgtgtttcccaggctggtctcaaactcctgggctcaagcaattttcctgccttggcgtcctgaagctctgggattacacaggtatgagccactgcacctggcct i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 205607 152 - 135371336 atctctgctgcatttttttttttctttcttaaatagaaacggggtctcactgtgtttcccaggctggtctcaaactcctgggctcaagcaattttcctgccttggcctcctgaagctctgggatt--acaggtatgagccactgcacctggcct i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 20560 0 + 30858 C e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64157138 0 - 94057673 C e canFam2.chr26 3199582 2640 + 42029645 I a score=443825.000000 s hg19.chrUn_gl000223 80420 377 + 180455 atttctgctgcattctgttggctacaggcaaattacaagtccacccaggttcaaggagctg---gtgtcgacctcaactctca-tgggagaaatatatagca----------ggcacactgtggaagagaatgtgtgataggagatactg-ttttggccatgtttggga--------ttaccacggtctgcc-ctctggctgtaacaattcacatccccc--ccat------gcaaagtacagccatctcctcccccaagatccc-aatgtctcatcccgttataatatcagattgaagaccaggatctcatcgtcaaactctgctacaggtgcagatgggactcttgagga-------------tgcagttcctgaggtgctatttctcccaatctgaatgcctgtgaaatatgagacaagt s panTro2.chr12 205759 377 - 135371336 atttctgctgcattctgttggctacaggcaaattacaagtccacccaggttcaaggagctg---gtgtcgacctcaactctca-tgggagaaatatatagca----------ggcacactgtggaagagaatgtgtgataggagatactg-ttttggccatgtttggga--------ttaccacggtctgcc-ctctggctgtaacaattcacatccccc--ccat------gcaaagtacagccatctcctcccccaagatccc-aatgtctcatccccttataatatcagattgaagaccaggatctcatcgtcagactctgctacaggtgcagatgggactcttgagga-------------tgcagttcctgaggtgctatttctcccaatctgaatgcctgtgaaatatgagacaagt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 450 377 + 31489 atttctgctgcattctgttggctacgggcaaattacaagtccacccaggttcaaggagctg---gtgtcgacctcagctctca-tgggagaaatatatagca----------ggcacaccgtggaagagaatgtgtgataggagatactg-ttttggccatgtttggga--------ttaccacggtctgcc-ctctggctgtaacaattcacatccccc--ccat------gcaaagtacagccatctcctcccccaagatccc-aatgtctcatcccgttataatatcagatngaagaccaggatctcatcgtcaaactctgctacaggtgcagatgggactcttgagga-------------tgcagttcctgaggtgctatttctcccaatctgaatgcctgtgaaatacgagacaagt i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 244888 374 - 136387465 atttctgctgcattctgttggctacaggcaaattacaagtccacccaggttcaaggagctg---gggtcgacctcaactctca-tgggagaa----atagca----------ggcacactgtggaagagaatgtgtgataggagatgctgttttttgccacgtttggaa--------ttaccacggtctgcc-ctctggctgtaacaattcacacccctccgccat------gcaaagtatagccatctcctcccccaagatccc-aatgtctcattccgttataatatcagattgaagaccaggatctcatcgtcaaa--ctgctacaggtgcagatgggactcttgagga-------------tgcagttcctgaggtgctatttctcccgatctgaatgcctgtgaaatatgagacaagt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 214959 378 - 134511895 attgcggctgcattctcttggctacaggcaaattacaagtcaacccaggttcaaggagctg---gtgtcgacctcaactctca-tgggagaa----acagca----------gtcacagtgtagaagagaatgtgcgataagagatactg-tttttgccatgtttggaa--------TTACCACGgtcggcc-ctctcgctgtaacaattcgcatccccc--ccaccccccggcaaagtatagccatctcct-ccccaagatccc-aatgtctcatctcactataatatcagattgaagaccaggatctcatcgtcagactctgctacaggtgcagatggggctcttgagga-------------tgcagttcctgaggtgctatttctcccaatctgaatgcctgtgaaatacgagacaagt i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 20560 371 + 30858 atttctgctgcaatctgttgactatgaacaagtcaccagcccatctggattcaaggggcagggtgcgtagacctctcctccctgtgggagga----gtggcaaaatcacattgcc-ccttgtagaagaggatgctgtgtgcgaggtgttc-ttgtagccatcttagggaaacaaaacttaccacaGActgcc-ctctggctttgaccattgacttcc---------------gcaaaccataaccacctcctgccccaagaccccaaacgtctcattccatcgcggtgtcaggttgaagtccaagacctcattctggaaatcaggccctgtggcaggtgagggtcctcaggactgctcccctgggtaccgctctttacgtgcta---ttctcagtc--------------------------- i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64157138 396 - 94057673 atttctgctgcatcccgccagctatgagcaattctccagcccatctggattcaaggagcagggggcatagacctcccttcccagtgggcgga----atggcacagtcacattgtcatattgtcgaagaggatgctgcgtaggaaatattg-ttgcagccatctttgggaaac--agcttaccacaGCCTGCCTCTCTGGCTTTAACAGTtcacatct---------------gtaagctatactcatctcct---ccaagacccc-aatgtctca-ccaatcatggcagcaggttgaagtccaggacctcatcacctaaatcagctactgccgcaccagaggctctttgggactgctccctagggtgcagctccttaggtgctactcctctcagtctgaagacctgcgaactaaaggacaagt i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e canFam2.chr26 3199582 2640 + 42029645 I a score=155626.000000 s hg19.chrUn_gl000223 80797 86 + 180455 tattttcatcttacacacccagaacg-taacagtggggcagacacagaaaaactgttaccaatactcctattcaaaaatggggacaa s panTro2.chr12 206136 86 - 135371336 tattttcatcttacacacccagaacg-taacagtggggcagacacagaaaaactgttaccaatactcctattcaaaaatggggacaa i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 827 87 + 31489 tattttcatcttacacacccagaacgttaacagtggggcagacacagaaaaactgttaccaatactcctattcaaaaatggggacaa i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 245262 86 - 136387465 tattttcatcttacacacccagaatg-taacagtggggcagacacagaaaaactgctaccaatactcctattcaaaagtggggacaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 215337 86 - 134511895 tattttcatcttacacacccaggaca-taacagtggggcagacatagaaaaactgttatcaatactcctattcaaaagtggggacaa i rheMac2.chr11 C 0 I 324 s turTru1.scaffold_102261 20931 82 + 30858 ----ttcgtcttacaaacctgaaata-tgatagtggggcagacagaggaagacttctatagatattcctattccaaactggggacaa i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64157534 77 - 94057673 tattgtcatcttacacacccaaaata-taatagtggggcagacataggaaatctg---------ctcccattcaaaaccggggacaa i equCab2.chr8 C 0 C 0 s canFam2.chr26 3202222 85 + 42029645 TATTTCCATCTT-TTcacccaaaata-caaccgtgggccacacacaggaaaactgctacggatactcctgttcagcgctggagacaa i canFam2.chr26 I 2640 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=346708.000000 s hg19.chrUn_gl000223 80883 269 + 180455 gaggagg---cacagagtagtcactgttccatagaaatccataaatcctactgggtacccattaccagttcggtgattagggtttgg----ttctgctttcttggacttctcctccatggctctttgctctaccctctggatcttagttctgctctc-tgagt---catccatggtttttcataaaatgtgacca-tgtttgcaagtgagtatccttctcaacctccttcctga-gcaaaaaggttgagagttcaaatatctttttttatacag-------tttgtcct s panTro2.chr12 206222 269 - 135371336 gaggagg---cacacagtagtcactgttccatagaaatccataaatcctactgggtacccattaccagttcgatgattagggtttgg----ttctgctttcttgggcttctcctccatggctctttgctctaccctctggatcttagttctgctctc-tgagt---catccatggtttttcataaaatgtgacca-tgtttgcaattgagtatccttctcaacctacttcctga-gcaaaaaggttgagagttcaaatatctttttttatacag-------tttgtcct i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 914 269 + 31489 gaggagg---cacacagtagtcactgttccatagaaatccataaatcctactgggtacccattaccagttcggtgattagggtttgg----ttctgctttcttggacttctcctccatggctctttgctctaccctctggatcttagttctgctctc-tgagt---catccatggtttttcataaaatgtgacca-tgtttgcaattgagtatccttctcaacctccttcctga-gcaaaaaggttgagagttcaaatatctttttttatacag-------tttgtcct i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 245348 269 - 136387465 gaggagg---cacacagtagtcactgtttcatagaaatccttaaatcctactgggtacccattaccagttcggtgattagggtttgg----ttctgctttcttggacttctcctccatggctgtttgctctaccctctggatcttagttctgctctc-tgaat---catccatggtttttcataaaatgtgacca-tgtttgcaattcagtttccttctcaacctccttcctga-gcaaaaagattgagagttcaaataccttcttttgtacag-------tttgtcct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 215747 267 - 134511895 gaggagg---cacacagtagtcactgttccatagaaattcttaaatcctactgggtacccattaccagttcggtggttagggtttgg----ttcttctttcttggacttctcctccatggctctttgctctaccctctggatcttagttctgctgtcttgagt---catccatggtttttcataaaatgtgacca-tgtttgcaactgagtatccttctcaacctccttcctga-gcaaaaaggttgagagttcaaatatcttttt---tgtag-------tttgtcca i rheMac2.chr11 I 324 C 0 s turTru1.scaffold_102261 21013 264 + 30858 catgagtcctcacacagcagccgctggtccacagaaattcc-aaatcctgttgggtacgtattaccagttaactgtttagggtccgg----tcctgctcgcgtggagct---ctctgtacctcttagcggcacc--ttggggcttggttctgc-----cgagc---cacgcttccttatcc----taaac-atccacgtttgcca--gagtgtccttctcagcctccttcctgcccagacaacgttgggagcccaaagagctctttttattttgtccagggtttgtctt i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64157611 233 - 94057673 caggagtccccacaaggcagccacgggcccatagaaattcctaagtcctgctgggtccgtgt----------------agggttcac----tcctgctcacttggag------ttcagagctcttggctgcaccctctgtgtctaag-cctgc-------------cttccttccttatgcata-aaaatgacccatgtttgcaagtgagtatccttctcagcccccttcctgccccaaaaaggctgtgagtccaaagatctctttttattttg--------------- i equCab2.chr8 C 0 I 3 s canFam2.chr26 3202307 255 + 42029645 gagga-tccccacacagcagtcactggtccatagaaattcctaaatcccactgcatgcatgttacc------------aggtaccaactggtcctgttctcttggggtt---cttcctagctcttggcagcaccttttggatcttggttctgccatc-tgagtcatcatctttccttattcataggaagtgatcc-tgtttgcaagtga-------cctcagcctcgctcct---ccaaaaag---ttgagtccaaagatctctttttagtttgt---agtttggtcct i canFam2.chr26 C 0 I 407 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=47660.000000 s hg19.chrUn_gl000223 81152 68 + 180455 tatctgtaaagttagcatcac------------tgtttttaagaacgtgtgggatttttagctatctgtgtacaacccat s panTro2.chr12 206491 68 - 135371336 tatctgtaaagttagcatcac------------tgtttttaagaatgtgtgggatttttagctatctgcatacaacccat i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 1183 68 + 31489 tatctgtaaagttagcatcac------------tgtttttaagaacgtgtgggatttttagctatctgtgtacaacccat i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 245617 68 - 136387465 tatctgtaaagttagcatcac------------tgtttttaagaacgtgtaggatttttagctatctgtgtataacccat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 216014 68 - 134511895 tatctgtcaagttagcatcac------------tgtttttaaaaacgtgtgggatttttatctatctatgtacgatccat i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 21277 43 + 30858 -----ttcaagttaatatggct-----------gggtttttTTTTTGTTTGGGGttttt--------------------- i turTru1.scaffold_102261 C 0 I 2955 s equCab2.chr8 64157847 57 - 94057673 --------AGGTTGATAGGGC------------TGTTTTAAAAACTTTGTGGCATCTGTGCATGTATTTATACTATC--- i equCab2.chr8 I 3 I 456 s canFam2.chr26 3202969 75 + 42029645 TAACTCTATAATTAGCATGTCTCCAACTTCAAGTGATGGAAAATATTCTTGGGAATTAAGGTTGTATGAAATTTT----- i canFam2.chr26 I 407 I 100 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=536907.000000 s hg19.chrUn_gl000223 81220 452 + 180455 tccattagacaaaagccacaccccaa--aaatctcttaa----taagactttctctactatgggctctcagtgggccttttgtgggacctcacccttaaaattcttagcagttctgttgcttatgagagagggctcacagaagca-ttctctcaagtccttagaagtcctttttgtttattcattgaagggggtcaggaggcaccgcttcagatctttctggaatcttacataagggtattatagccagccttggattacatcttttccctgaggagctttcgtactttgagaatgctttacaagctgaaaagactgttt----------accatttcctccatg---gaatggttcattttttagttc-tctttc----ctctcattttattataagcaatgagga---gccaggtagcatcctgaacactgggtctagaaaacacttagctctatca------ctgaggtcatgaggtaca-tct s panTro2.chr12 206559 449 - 135371336 tccattagacaaaagccacaccccaa--aaatctcttaa-------gactttctctaccatgggctctcagtgggccttttgtgggacctcacccttaaaattcttagcagttctgttgcttatgagagagggctcacagaagca-ttctctcaagtccttagaagtcctttttgtttattcattgaagggggtcaggaggcaccgcttcagatctttctggaatcttacataagggtattatagccagccctggattacatcttttccctgaggagcttttgtactttgagaatgctttacaagctgaaaagactgatt----------accatttcctccgtg---gaatggttcgttttttagttc-tctttc----ctctcattttattataagcaatgagga---gcccggtagcatcctgaacactgggtctagaaaacacttagctctatca------ctgaggtcatgaggtaca-tct i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 1251 452 + 31489 tccattagacaaaagccacactccaa--aaatctcttaa----taagactttctctaccatgggctctcagtgggccttttgtgggacctcacccttaaaattcttagcagttctgttgcttatgagagagggctcacagaagca-ttctctcaagtccttagaagtcctttttgtttattcattgaagggggtcaggaggcaccgcttcagatctttctggaatcttacataagggtattatagccagccttggattacatcttttccctgaggagctttcgtactttgagaatgctttacaagctgaaaagactgttt----------accatttcctccatg---gaatggttcattttttagttc-tctttc----ctctcattttattataagcaatgagga---gccaggtagcatcctcaacactgggtctggaaaacacttagctctatca------ctgaggtcatgaggtaca-tct i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 245685 452 - 136387465 tccattagacaaaagccacaccccaa--aaatctcttag----taagactttctctaccattggctctctgtgggccttttgtgggacctcacccttaaaattcttagcagttctgttgcttataagagagggctcacagaagca-ttctctcaagtccttagaagtcctttttgtttattcattgaagggggtcaggaggcaccgcttcagatctttctggaatcttacataagggtactatagccagccttggattatgtcttttccctgaggagctttcttactttgagaatgctttacaagctgaaaagactgttt----------accatttcctccatt---caatggttcattttttagttc-tctttc----ctctcattttattataagcaatgagaa---gccaggtagcatcctgaacactgggtctagaaaacacttagctctatca------ctgaggtcatgaggcaca-tct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 216082 460 - 134511895 cccattagacaaaagccatacccc-a--aaatctcttaa----taagactttctctaccatgggctctctgtgggccttgtgtgggacctcacctttaaaattcttggcagttctgttgcttatgagagagggttcacagaagca-ttccctcgagtccttagaagttctttttgtttattcattgaagggggtaaggagataccacattagacatttctggaatcttacacaagggtactatagccagtcttggattgtgtcttttccctgaggagctttcttactttgagaatgctttacaagctgaaaagactgttctgggcca---tttatttcccccatg---gaatggttcatttcttagttc-tctttc--ctctctcattttattataagcaatgaaaa---accaggtagcatcctgaaccctgggtctagagaacacttagctctatca------ctgaagtgatgaggtaca-ctt i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3203144 432 + 42029645 -caattagacaaaagccacatcccccc-aagtctcttagaga-taaggttgcctctgctgtggg----cagggagcctgctgtgaggccacagcgtga-----cttagaagatctgtt------gtttgagggtccacagaggca-gcccctgaagtcctcagaaagcattttttttttttgtctggaggggttcatgaggta-ccccttaaatctctctgaaatcttacctaagggttttatag---------------------tccgtgagggcatttcttagtttggagacactttactagcagaaaga------ctgggccacttaacagctcttctgaggaagaattgttctgtttttagttcctctctctgctctcaaattttattaaaagtagtgagaaaaaaccaggttgaa-cccaagcactgtgcctggaaaa-------ctgggttatttcctttgagggcattaggtaggtttt i canFam2.chr26 I 100 C 0 s equCab2.chr8 64158360 447 - 94057673 tcaattaggcaaaagccacatccccccgaaatctcttggagattaagactctgtctgccttgggctctctgtgggctttccgtgagagcacagcctgaagactcttagcagctctatt----aggagagagggtccacagaggtattcccctgagatccttaggaggc--tttttttgggggtctgaaggggttcatgaggcacccccttagatccttctgaaatcttacctcaggacattatag---------------------tccctgagga-acttcttactttgagaac-ttttactagctgaaaagactgttctgggccatttcacatttcctccagg---gaatggttcatttttcagttcttctctcc-ctctctcgttttattgtaattagtgagaagaggccaggtagca-cctggacgctgtgcctaggaaactcttagctggacta-----ttggagggcattaggtaca-ttt i equCab2.chr8 I 456 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e turTru1.scaffold_102261 21320 2955 + 30858 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=347902.000000 s hg19.chrUn_gl000223 81672 208 + 180455 tctattttccatttacattaggtgacagtgttgatacac---ct-gtcactacataaaaaagtctcattttctccatgtttcaataatgctttccttgtgttccttcaagctctcaccagcaacctccttgatgactttt-agactctgctaataccatccccaaag--cccactgggttttactgatattttactcaagggcctttcagattct s panTro2.chr12 207008 208 - 135371336 tctattttccatttacattaggtgacagtgttgataaac---ct-gtcactacacaaaaaagtctcattttctccatgtttcaataatgctttccttgtgttccttcaagctctcaccagcaacctccttgatgactttt-agactctgctaataccatccccaaag--cccactgggttttactgatattttactcaagggcctttcagattct i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 1703 208 + 31489 tctattttccatttacattaggtgacagtgttgataaac---ct-gtcactacataaaaaagtctcattttctccatgtttcaataatgctttccttgtgttccttcaagctctcaccagcaacctccttgatgactttt-agactctgctaatatcatccccaaag--cccactgggttttactgatattttactcaagggcctttcagattct i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 246137 209 - 136387465 tctattttccatttacattagatgacagtgttgataaac---ct-gtcactacataaaaaagtctcattttctccatgttgcaataatgctttccttgtgttccttcaagctctcaccagcaacctccttgatgacttttaagactctgctaataccatccccaaag--cccattgggttttactgatattttactcaagggcctttcagattgt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 216542 208 - 134511895 tctattttcaatttacattaagtgacagtgttgataaac---atcgtcactacattaaaaagtctcattttctccatgtttcaataatgctttcc-tgtgttccttcaagccctcaccagcaacctccttgatgattttt-agactctgctaataccatccccaaag--ctcactgagttttactgacattttactcaagggcctttcagattct i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 24275 212 + 30858 tctattttccatgtccattaggcgacagtattgagatactttct-gccactc-ataacaaagtctccttttgcccatgttcccataacactctccttatgtcccttcaagcccccatcaacaacttccttgatgaccttc-aggctctgctaacacccctcctaagcgcccttcaggctttcattaacattttcctcaaaagtcttccagattct i turTru1.scaffold_102261 I 2955 C 0 s equCab2.chr8 64158807 199 - 94057673 tctattttccatttacattaggtgacagtattgagcaactttct-gccaccacataacaaagtccccttctctccatgttcccataacactatcctcatgttccttcaagccctcaacagcaacttccttgatgacct-t-agggtctactaataccctccctaagggccctgcaggctttcactcatgttttcctcaagag------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3203576 196 + 42029645 tttatctttcatttacattagatggcaacattgataacttgtct-gccttta-----------cctcctttccccatg------taacacttttctcgtgttctgtccagctctcaccaacaatctctttgatgacctct-aggttcttctaataccctttccaagagcccttcaggttttcaccaatagcttcctcaggaatcttccagattcA i canFam2.chr26 C 0 I 214 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=286591.000000 s hg19.chrUn_gl000223 81880 195 + 180455 gctcatcatccagtgccaaggccagtgatgcatgt---------------aagtagaaccccacttccaACACTAAATTTCtattccaatcactactgtagtctaacgtatcacctcaaaacattatagcacaaatagcaacaaagacgttattatttctgatggttcctgtttgtcagggattcaggagaggtctgactgagccg-ttct s panTro2.chr12 207216 195 - 135371336 gctcatcatccagtgccaaggccagtgatgcatgt---------------aagtaggaccccacttccaACACTAAATTTCtattccaatcactactgtagtctaacgtatcacctcaaaacattatagcacaaatagcaacaaagacgttattatttctgatggttcctgtttgtcagggattcaggagaggtctgactgagccg-ttct i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 1911 195 + 31489 gctcatcatccagtgccaaggccagtgatgcatgt---------------aagtaggaccccacttccaACACTAAATTTCTATTCCAATCACTACTGTAGTCTAACGTATCACCTCAAAACATTATAGCACAAATAGCAACAAAGATGTTATTATTTCTGATGGTTCCTGTTTGTCAGGGATTCAGGAGAGGTCTGACTGAGCCG-TTCT i gorGor1.Supercontig_0000258 C 0 M 763 s ponAbe2.chr12 246346 195 - 136387465 gctcatcatccagtgccaaggctagtgatgcatgt---------------aagtagcaccccacttccaACACTAAATTTCtattccaatcactactgtggtctaacatatcacctcaaaacattatagcacaaatagcaataaagatgttattatctctgatggttcctgtttgtcagggattcaggagaggtttgactgagccg-ttct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 216750 189 - 134511895 gctcataatccagtgcccaggccagtgatgcatgt---------------gagtagcaccccacttccaACACGA------TATTCCAATCCctgctgtggtctaaaacgtcacctcaaaacattatagcacaaatggcaacaaagacgttattatctctgatggtgtctgtttgtcagggattcaggagaggtttgactgagcac-ttat i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 24487 206 + 30858 gctcaccacccagtgcccaaaccagtggcagatgttttaaggttttgttgcagtagcacccaacttccaagaccaaaTTTCTATTCCAGTCAGtactgctgcctaaagcatgtccccaaa---ctatagcatatgtaacaacaaagatgttac-atctctcacggtttctgttggtcaggagtccctggagggtttggct-gctggttttt i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159006 202 - 94057673 ----acgagccagtgccaaagccagtggcacatgttttaagactttgttacagtagcactccacttccaataccagaTTTCTGTTACaattactgttgctgcctataatatcaccccaaaactctatagtgtatggaacaa---agatgttactgtctctcatggtttctgttggtcaggaattcagggaaggtctggct-ggcag-tgct i equCab2.chr8 C 0 C 0 s canFam2.chr26 3203986 173 + 42029645 GCACACTGCCCAGTGCCAAAGC----------------------------TAGTAGGACCCCACTCCCAG-GCCAAATTTCTATTCTGATCACAactgcttcctaaaatgtcaccacaaaaacctg-agcatacataacaac--aaaaatgagtctctctcatggttctcttgggtcaggctttc-----aggtttggctgggcag-ttct i canFam2.chr26 I 214 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=165745.000000 s hg19.chrUn_gl000223 82075 237 + 180455 gggtcagaatttctcatg----------------g-----------agccagaaaggcatggaacgggagcatatgggg-ctgaacaagcatctc------tttatgtaatctcagagcctctctatgtggtttctctatatggattatttgagatttcctcct-agtactgcagcttca-aggactgcttacatggcaa--------------atgaaggatctctgcaatcaaggcagaagccgcatggctttttatatcctgcgaag--ttacatg-------------------------------atcacttcct s panTro2.chr12 207411 237 - 135371336 gggtcaggatttctcatg----------------g-----------agccggaaaggcatggaacgggagcatatgggg-ctgaacaagcatctc------tttatgtcatctcagagcctctctatgtggtttctctatatggattatttgagatttcctcct-agtactgcagcttca-aggactgcttacatggcaa--------------atgaaggatctctgcaatcaaggcagaagccgcatggctttttatatcctgcgaag--ttacatg-------------------------------atcacttcct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 246541 239 - 136387465 gggtcaggatttctcatg----------------g-----------agccggaaaggcatggaacgggagcatatgggg-ctgaacaagcatctc------tttatgtcatctcagagcctctctatgtggtttctctatatggactatttgagatttcctcct-agtactacagcttca-aggactgcttacgtggcaa--------------acgaaggatctctgcaatcaaggcaatagccgcatggctttttatatcctgcaaagtcttacatg-------------------------------atcacttcct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 216939 245 - 134511895 gggtcaggatctctcatg----------------g-----------agccggaaaggcatggaacgggagcataagggg-ctggacaagcatctctttctttttatgtcatctcagagcctctctgtgtggtttctctatatggactatttgagatttcctcct-agcactgcagcttca-aggactgcttacgtggcaa--------------atgaaggatctctgaaatcaaggcagaagccgtattcctttttatatcctgcaaagtcttacatg-------------------------------atcacttcct i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 24693 243 + 30858 ggttcagggctcctcgtgcaattgctgtcc----cctggtggctggagctgGAAAGG-GTGGCACTGGAAGATGTGGGG-CTGGATGGGCATCTCTTTTTCTCCATGGAGCCTCAGAGCCTCTCTACATGGTTTCTCCACCGGCACTCTCTGTGGTTTCTCTCTGAGCACCACAGCCTGA-CAGGCTGCTCACAGGGCCG-CCAAAGCTTCAAGAACACGTGTTCAAGCAAGGAAAGCAGAA---GCACTTTCT------------------------------------------------------------------ i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159208 273 - 94057673 ggtgcaggagctctcatgccattgctgtccgtcagctgctgg----agctagagagt-gtggcattgggacatatgggg--cggatggtc-tctctttctctgcaggtagcctcagagcctcgctaggtgttt-------agatggactctgaggtttcctcct-agcaccacagcccgaggggactgctcacatggtagccaaaagcttcaagaacaagtactccagcgaggaaagcggaagcggcattgcctttcgcggtgtgggaag--ccacgag-----------------------------gcagcacttcca i equCab2.chr8 C 0 C 0 s canFam2.chr26 3204159 263 + 42029645 ggttcagggtgtctcatgTAA-TGTTGTTTG---GCTGGTGGGTGCAGCTGGGAAG--ATGGCACTGGAGCATATGGGGGCTGGACGGGCATCTCTTTCTCTTCCTGTAGCCTCAGAACCTATGTAGGCG---------------------------CCTCCCC-AGCACCACAGCCTGA-GAGACTGGCCACATGGCag----------------caagtgttccagctagggcagcagaagctgcatggccttt-GTGGTGTTTGTGC--CTGTGTGTGGGTATTTGTGCCtgtgtgtctgtgtgtgcatctctt--- i canFam2.chr26 C 0 I 191 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 2106 763 + 31489 M e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=42957.000000 s hg19.chrUn_gl000223 82312 49 + 180455 ccaca-ttcttttggctacaagtgactcacaagccaacaaaactcaaagg s panTro2.chr12 207648 49 - 135371336 ccaca-ttcttttggctacaagtgactcacaagccaacaaaactcaaagg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 246780 50 - 136387465 ccacatttcttttggctacaagtgagtcacaagccaacaaaactcaaagg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 217184 49 - 134511895 ccaca-ctcttttggctacaagtgagtcacaagccaacaaaactcaaagg i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 24936 44 + 30858 CCACA-TTCTTTTAGCTACAAACAAGTAACCAGCCAACAGGActc----- i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159481 43 - 94057673 tcatt-gtcttcc-gctacaggcgagtctgcggccaacaagactc----- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3204613 42 + 42029645 CCACA-TTCTGCT-GCTTCCAGTGA-CCACTAGCAAACAGGACCT----- i canFam2.chr26 I 191 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 2106 763 + 31489 M e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=112545.000000 s hg19.chrUn_gl000223 82361 101 + 180455 atggggcaagactataagtgggaggagtggcaagatcacactgtagaagaggagatgagatggaagctact----gtcatagccca--------------------------------------------------------------------cttcagaaaataaaatctg s panTro2.chr12 207697 101 - 135371336 atggggcaagactataagtgggaggagtggcaagatcacactgtagaagaggagatgagacagaagctact----gttatagccca--------------------------------------------------------------------cttcagaaaataaaatctg i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 2869 100 + 31489 ATGGGGCAAGACTAtcagtgggaggagtggcaagatcacactgtagaagaggagatgagatggaagctact----gtcatagccca--------------------------------------------------------------------cttcagaaaat-aaatctg i gorGor1.Supercontig_0000258 M 763 C 0 s ponAbe2.chr12 246830 101 - 136387465 atgggacaagactatcagtgggaggagtggcaagatcacactgtagaagaggagatgagatggaagctact----gtcatagcccg--------------------------------------------------------------------cttcagaaaataaaatctg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 217233 169 - 134511895 atggggcaagactatcagtgggaggagcggcaagatgacactgtaggagaggagacgagatggcagctact----gtcatagcccatcagtgggaggagcggcaagatgacactgtaggaaaggagatgagatggcagctactgtcatagcctgcctcagaaaacaaaatctg i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 24980 87 + 30858 --------------tcggtggggggagtgtcacagtcacattgtagaagaggatgccagctgggacatgtt----gtcacagtcaa--------------------------------------------------------------------ctttggaaaacaaaatctg i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159524 62 - 94057673 --------------gcaatgggaggagtggcacagccacgctgtagaagaggatgtgaga-------------------------------------------------------------------------------------------------tggaaaaGAAAACTTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3204655 90 + 42029645 --------------TCAGTGGGAAGAGT-GTACAGCCACAATGTGGAAGAGGAGGTGAGGAGGGGCTGGCTCTTGGCTACAGCCAT--------------------------------------------------------------------CTTTGGAAAGCAAAACCCA i canFam2.chr26 C 0 I 206 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=35904.000000 s hg19.chrUn_gl000223 82462 31 + 180455 ccacatatgtaaaacat-ggttgattattg---ta s panTro2.chr12 207798 31 - 135371336 ccacatttgtaaaacat-ggttgattattg---ta i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 2969 31 + 31489 ccacaTATGTAAAACAT-GGTTGATTATCG---TA i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 246931 31 - 136387465 ccacaTATGTAAAACAT-GGTTGATTGTTG---TA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 217402 31 - 134511895 ccacaTATGTAAAACAT-GGTTGATTATTG---TA i rheMac2.chr11 C 0 C 0 s turTru1.scaffold_102261 25067 30 + 30858 ccacaTGTGTCAATAACGGGTCCATTGTTG----- i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159586 30 - 94057673 --CCACATgtcaaaaat-ggtcccttattggta-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3204951 27 + 42029645 CCACAtatgtcaaaaat-ggccaattat------- i canFam2.chr26 I 206 I 534 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=282601.000000 s hg19.chrUn_gl000223 82493 169 + 180455 atttcctatggttcaacct--------CATATACAAATGTATGGCGAAAGAGACCTGGATTTCA-TTTACTCAGAAAattttcatatattagattgacctgtatttattttttcttctactgtctctatcctgatttggtgtaaaggttataaaagaatttctaggtgaatttggaag s panTro2.chr12 207829 169 - 135371336 atttcctatggttcaacct--------CATATACAAATGTATGGCGAAAGAGACCTGGATTTCA-TTTACTCAGAAAattttcatatattagattgacctgtatttattttttcttctactgtctctatcctgatttggtgtaaaggttatagaagaatttctaggtgaatttggaag i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 3000 168 + 31489 ATTTCCTATGGTTCAACCT--------CATATACAAATGTATGGCGAAAGAGACCT-GATTTCA-TTTACTCAGAAAattttcatatattagattgacctgtatttattttttcttctactgtctctatcctgacttggtgtaaatgttataaaagaatttctaggtgaatttggaag i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 246962 169 - 136387465 ATTTCCTATGGTTCAACTT--------TATATACAAACGTATGGCGAAAGAGACCTGGGTTTCA-TTTACTCAGAAAATTTTCATATATTAGactgatctgtatttattttttcttctgctgtctctatcctgatttggtgtaaaggttataaaagaatttctaggtgaatttggaag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 217433 166 - 134511895 ATTTCCTATGGGTCAACCT--------TATATACAAATGTATGGAGAAAGAGACCTGGATTTCA-TTTACTCAGAAAATTTTCATGTATTAGATTGACCTGTAT---TTCTTTCTTCTACTGTCTCTATCCTGATTTGGTGTAAAGGTTATAAAAGAATTTCTAGGTGAATTTGGAAG i rheMac2.chr11 C 0 I 669 s turTru1.scaffold_102261 25097 169 + 30858 ATTTCATATAGTTCCACCTAATACAGACATATACAAATGTGTGGGGGAAGAAACCTGGATTCCattttattcag---tttttcatctattagattgacct----ctacttttttttctactgtgtctatccaatttcggtgtgaaggttatac-aggattgt-aaatgaatttgagag i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159616 175 - 94057673 atttcatatagttcagcctaaTACAGACATGTATGAATGGGTGGAGAAAGAAACCTGGATTCCattttattcagaaaattttcatctattagattgacctataattatttttttccctactgtctccag---atttgcttgcgaagattataccaggattgtaaaatgaattttggag i equCab2.chr8 C 0 C 0 s canFam2.chr26 3205512 176 + 42029645 atttcatatagttcaacctaG-ACAGACATACACAAATATGTGGGGAAAGAAACCTGGATTCCATTTTACCAAGAAAATTTTCATCTATTagattagcctataattattatttt-tctatagtctctagccagtttttgtatgaagtttttactaggattataaaatgaatttgggag i canFam2.chr26 I 534 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=335338.000000 s hg19.chrUn_gl000223 82662 284 + 180455 taatctatattttaaaaatt-ctctaatactgctt-----acataatgataatcaagtcctt-aatgtttgctaaaattttattggacatccatctgggctttgctat-atttcactgagg-----------------------gaagcttttgatactccaattcaattttgttatttattgttgattttattcagtcttgcttttt-ctgctttggtcagttttgataatgtgcagtattctagaaaactgaaaaatgtgttatctatttttat-ttgactggcgtatggttatccttagtattctcccataatt s ponAbe2.chr12 247131 280 - 136387465 taatctatatttaaaaaatt-ttctaacactgctt-----acataatgataatcaagtcctt-aatgtttgctaaaattttactggacatccatctgggctttgctgt-atttcactgagg-----------------------gaagcttttgatactccaattcaatt---ttatttattgttgattttattcagtcttacttttt-ctgctt-ggtcagttttgataatgtgcaatattctagaaaactgaaaaatgtgttatctatttttat-ttgactggcatatggttatccttagtattctcccataatt i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 3168 283 + 31489 taatctatattttaaaaatt-ctctaatactgctt-----acataatgataatcaagtcctt-aatgtttgctaaaattttattggacatccatctgggctttgctgt-atttcactgagg-----------------------gaagcttttgatactccaattcaattttcttatttattgttgattttattcagtcttgcttttt-ctgctt-ggtcagttttgataatgtgcagtattctagaaaactgaaaaatgtgttatctatttttat-ttgactggcgtatggttatccttagtattctcccataatt i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 207998 278 - 135371336 taatctatattttaaaaatt-ctctaatactgctt-----acataatgataatcaagtcctt-aatgtttgctaaaattttattggacatccatctgggctttgctat-atttcactgagg-----------------------gaagcttttgatactccaatt-----ttcttatttattgttgattttattcagtcttgcttttt-ctgctt-ggtcagttttgataatgtgcagtattctagaaaactgaaaaatgtgttatctatttttat-ttgactggcgtatggttatccttagtattctcccataatt i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 25266 307 + 30858 taatctatcctttaacattt-ttctagcactgc-tgtataacataatgatgatcaagtccttcactgtttggtaaaattttactgttcaacaatctaggc-ttgttac-atttcattgagggttttttttttttctttcattgaggggattttg--actacagttcagtttctttatttgtgattga-tttaatcaatctcactttttcctgctt-ggtcaattttggtaatgtataatttacaagaaaattgaaaattttaatctaaattttcatatttagtggcacatggttattcttagtattctcatataa-- i turTru1.scaffold_102261 C 0 C 0 s equCab2.chr8 64159791 287 - 94057673 taatctatcctttcaaaattattgtaacactgtttgtataacatagtgatgatcaagtccttccatgtttggtgaaattttactgctcaataatctaggc-ttgctac-atttcatgaagg-----------------------taagtttttg--actccagttcaatttccttgtttgttactga-tttattcagtcttgcttttt-ctgctt-gctcaattttggtaaggtataaattgcaaggaaattgcaagattttatctaaattttcatatgtagtggtacatggttatccgtagtattctcctataatT i equCab2.chr8 C 0 I 237 s canFam2.chr26 3205688 284 + 42029645 taatctatccttttaaaatt-ttataacactgcttgtataacataatgatgagcaagttctttaatgtttggcaaaattttactgttcaataatccaagc-ttgctacaattccatcaagg-----------------------gaaattttgg--actacaattcaatttccatatttgttactga-tttattcagtcttgcttttt-ctcttt-ggtctattttggtcatgtataacttgcaagaaaattgagaaattttatctaatctttcatatttagtggtacatggttatcc---ttattctcctataatt i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 217599 669 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=19424.000000 s hg19.chrUn_gl000223 82946 18 + 180455 ttt------taaaatctAAACTGT s ponAbe2.chr12 247411 18 - 136387465 ttt------taAAATCTAAACTGT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 3451 18 + 31489 ttt------taaaatctAAACTGT i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 208276 18 - 135371336 ttt------taaaatctAAACTGT i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 25573 18 + 30858 tta------aaaaatctaaattat i turTru1.scaffold_102261 C 0 I 5 s equCab2.chr8 64160315 23 - 94057673 ttcctcgaaaaaaaTCT-AATTAT i equCab2.chr8 I 237 I 5 s canFam2.chr26 3205972 18 + 42029645 ttt------aaAATTCTAAATTAT i canFam2.chr26 C 0 I 192 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 217599 669 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=943686.000000 s hg19.chrUn_gl000223 82964 889 + 180455 TGTATAGCCCC-TGTTCATCAAATACTAGTTACAAGTACATTCTCacgaatgctcttgaatctttcacccaaa--------------------cagaaaattaaaaataacttgaagcctctacttagtgttccctttttccaactcactgcttcttccacagggtgtagacactatcctaaagattttgattatcattttctagc-tttttt-tccccgttgttttgtcacataaacacatatgcctaaacaatatataactccattttgctttatcttggcctttaacaaagatgttatactacatacagtatttggggaataac-------atttatcactattaaatgtctaggacttgaaca---tattgatgATTCAATTTGTTCAAGCTTGTTCAATTTATTCAGTTTATTTCATAG--TT-GCA---TATTTTATCAACTG--GATAATAGTCTCTTTATT---CTTTTACATCTTTATCAGATTTATtttgttttaattaaat-ttgtattgagatagt-------ttcacctagagtatacaaaataatgcaga--gatcccttatacacttttcccagtttc-ccccaatg-ctaacattttgcaacactacagt---atatcacagccagaatactgaca-----------cacaa---tacttaacatttccccagttttacttatac---tt----tgtatgtgtgtatattaa--gttctgtt--------------------------------------------caatgttatcaccagtgtaggttcatgtatcaacaaccaccttcaagatgctgaacagttccaacaccataagatttgt-atctattttgtat-------tttgatgccactgaaaattgattcaatttgttaaatcccattttatattatttttct--gatatatagaaataaaattgatttgaatata-----ctgacatccaataattttgcaaaattcagtttttctttttaatgacttTAAtt s ponAbe2.chr12 247429 909 - 136387465 TGTATAGCCCC-TGTTCATCAAATATTAGTTACAAGTACATTCTCATGAATGCTCTTGAATCTCTCACCCaaa--------------------cagaaaattaaaaataacttgaagcctctacttagtgttccctttttccaactcactgcttcctccacagga-gtagacactatcctaaagattttgattatcattttctagc-tttttt-tccccgttgttttgtcacataaacacatatgcctaaacaatatataactccattttgctttatcttggcctttaacaaagatgttatactacatacagtatttggggaataac-------atttatcactattaaatgtctaggacttgaaca---tattgatgattcaat----------------------tgtagtttatttcatag--tt-gca---tattttatcaactg--gataatagtttcttcatt---cttttacATCTTTATCAGAtttg-----ttttaattaaat-ttgtattgagatagt-------ttcacctagagtatacaaaataatgcaga--gatcccttatacacttttcccagtttc-ccccaatg-ctaacattttgcaacactataat---atatcacagccagaatactgaca-----------cacaa---tacttaagatttccccggttttacttatac---tttgtatgtatgtgtgtatattaa--gttctgttcaatgttatcaccagtgtaggttcatgtagcaaccaccTTTGTTcaatgttatcaccagtgtaggttcatgtatcaacaaccaccttcaagatgctgaacagttccaacaccgtaagATTTGT-ATCtattttgtat-------ttttatgccattgaaaattgattcaatttgttaaatcccgttttatattatttttct--gatatatagaaataaaattgatttgaatata-----ctgacatccaataattttgcaaaattcacgttttctttttaatgacttTAAtt i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 3469 889 + 31489 TGTATAGCCCC-TGTTCATCAAATATTAGTTACAAGTACATTCTCACgaatgctcttgaatctttcacccaaa--------------------cagaaaattaaaaataacttgaagcctctacttagtgttccctttttccaactcactgcttcttccacaggg-gtagacactatcctaaagattttgattatcattttctagc-ttttttttccccgttgttttgtcacataaacacatatgcctaaacaatatataactccattttgctttatcttggcctttaacaaagatgttatactacatacagtatttggggaataac-------atttatcactattaaatgtctaggacttgaaca---tattgatgATTCAATTTGTTCAAGTTTGGTCAATTTGTTCAGTTTATTTCATAG--TT-GCA---TATTTTATCAACTG--GATAATAGTCTCTCTATT---CTTTTACATCTTTATCAGATTTATTTTGTT----TTAAAt-ttgtattgagatagt-------ttcacctagagtatacaaaataatgcaga--gatcccttatacacttttcccagtttt-ccccaatg-ctaacattttgcaacactatagt---atatcacagccagaatactgaca-----------cacaa---tacttaacatttccccagttttacttatac---tttgtatgtatgtgtgtatattaa--gttctgtt--------------------------------------------caacgttatcaccagtgtaggttcatgtatcaacaaccaccttcaagatgctgaacagttccaacaccataagATTTGT-ATCtattttgtat-------tttgatgccactgaaaattgattcaatttgttaaatcccattttatattatttttct--gatatatagaaatagaattgatttgaatata-----ctgacatccaataattttgcaaaattcagtttttctttttaatgacttTAAtt i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 208294 886 - 135371336 TGTATAGCCCC-TGTTCATCAAATATTAGTTACAAGTACATTCTCACAAATGCTCTTGAATCTTTCACCCaaa--------------------cagaaaattaaaaataacttgaagcctctacttagtgttccctttttccaactcactgcttcttccacaggg-gtagacactatcctaaagattttgattatcattttctagc-tttttt--ccccgttgttttgtcacataaacacatatgcctaaacaatatataactccattttgctttatcttggcctttaacaaagatgttatactacatacagtattTGGGGAATAAC-------ATTTATCACTATTAAATGTCTAGGACTTGAACA---TATTGATGATTCAATTTGTTCAAGCTTGTTCAATTTGTTCAGTTTATTTCATAG--TT-GCA---TATTTTATCAACTG--GATAATAGTCTCTTTATT---CTTTTACATCTTTATCAGAttta-----ttttaattaaat-ttgcattgagatagt-------ttcacctagagtatacaaaataatgcaga--gatcccttatacacttttcccagtttc-ccccaatg-ctaacattttgcaacactatagt---atatcagagccagaatactgaca-----------cacaa---tacttaacatttccccagttttacttatac---tttgtatgtatgtgtgtatattaa--gttctgtt--------------------------------------------caatgttatcaccagtgtaggttcatgtatcaacaaccaccttcaagatgctgaacagttccaacaccataagatttgt-atctattttgtat-------tttgatgccactgaaaattgattcaatttgttaaatcccattttatattatttttct--gatatatagaaataaaattgatttgaatata-----ctgacatccaataattttgcaaaattcagtttttctttttaatgacttTAAtt i panTro2.chr12 C 0 C 0 s turTru1.scaffold_102261 25596 922 + 30858 tttatgtccccttttttatctaatattagtTACAAGTACTTTCTCatgaatgtccatgaatctatcacccagtctgagaaa------------cagaaaattacaaatcacttgcagtctctgtctgctgttcctcctttccaactcactgctttctccacagag-gtagacactatcctaaacattttgcttatcattatcttgc-tttttc-atttcatcatcttatcacctacacatgtgtgtctaaataatatataatcc-atttcactttat--tggtctttaactatggtattatattatatacagtcttctgagaatgacttttttttttactcaatactatgtatctaggatgtaaaca---tgttgtttattcaat----------------------tgtagtttatttcatagttatagcatagtattctattgattgtatataatagtttattcattcTActtttacatccttattagatttattttgttttaattaaaaattttatcaagataattgcaag-ttcacctccagtataaaataaaatacaaagcgatccctaatacactttgcccagtttacccccagcg-ttaacattttgcataactacagtataatatcacagccagagtactgacatcaatacaatccacaagacttactaagatttccccagttttacttacacacagttgtatg--tgtatatgtatcaa--gttctatt--------------------------------------------tgattttatcacctgtgtatgtttatatatcgatgactatagtcaagatacagaacagttccaacac-acagaaa-----atttattgtgtaa-------tttgatacttttgaaaatgaattcattttattaaatcctattttataaagtttttct--ggtgtgtagaagtagaactgacttggatatacggacctgacatccagtgaccttgctaaattcattttttcttcctaactgtattattt i turTru1.scaffold_102261 I 5 N 0 s equCab2.chr8 64160343 886 - 94057673 TTTATGTCCCC-CTTTCATCTAACATTAGTAACAAGTACTTTCTCATGAGTGTTCACGAGTCTGTCac-------------------------gagaagactacaaataacttgccgc--gtgtccactgctcctcctatccaacccctcgcctcctccgcag-----agacgttctcctgagtatgttg---atcatcctctgg--tttttt-gcttcattgttttatcacatacacatgtatgcctaattaatatgtaatcc-----cattttattgtggcctttaacaatggtattatgttataggcagccttctgaaaatgac-----ttatcactcagtgttaggtatctaggacctagacatgttgttgtttattcaat----------------------tgtagtttatttcatag--at-gcataatattccattgactctatattatagtttattcattctccttttacatctttattagatttattttgttttg--------tttttttgcaataattacaaa-ttcacctgcagtgtaaaaagtaatagaaagaaattccttatacactttgcccagttta-ccccaatgtttaacattttgcaaaactatagtataatatcacaggcagaatattgacattgatacaattcacaatatttattaagatttccccagttttacttacactcacctgtgtgtttgtgtgtgtattaa--gttctatt--------------------------------------------caatgttatc-tatgtagaggttcatgtatcaacaaccacagtaaacatactgaacagttccaacactacaagacgacttattttttttatattttgcactttgatacttttgaaaatggattcattttactaaatcccaatttataaagtttttctgaggtgtttagatatagaattgacttggatatattgacctgacatccaatgaccttgctaaattcattttttttctCT------------- i equCab2.chr8 I 5 I 207 s canFam2.chr26 3206182 791 + 42029645 TTTATGTCCTC-TTTTCATCTCACATTAGTTACAAGTACTTTCTCATGAATGTTCGAAAATCTGTCACCCAGTCTGAGAAATAGGAAATTAAACAGGAAATTACAAGTAATTTGCAGCCTTTATTTGCTG----------------------ctcctccacagac-gcagatgccatcctgaatattctggttattgttctcttgctttttct-gtttcatcattttatcacagatacatgcctgcctaaataatatgtaattc-----cacttgatttttaccttcaA---------------------------------------------------CAGTATTATATATCTAGGGCTTGAACA---TATGGTTTATTCAGC----------------------TGTAGTTTATGTCATA---AT-ACATAATATCCCATTTACTAT-TATAATAGTTTATTCATTCCCCTTTTACATCTCTGTTAGATT--TCTTGttttaattgaaacttctattgagagaattgtaaatttcacctgtagtgtaaaaaataatagaga-----tccttat--actttgcccagttta-ccccaatg-ttaacgttttgcaaaactacagt---acaTCGCAG------------------TACAGTCCACAA---TCCTTAAGATTT-----GTTTCATTTACAC-------------tgttcatgtattaaacattttatt--------------------------------------------c--ttttatcatatgtgtaggctcatgtatcaacaacccatatcatgatactgaacagttcccataccaca---------aTTTTTTTtgtat-------tttcattcttttgaaaatggattcattttgttaaatctcatttcacaaagtttttct--ggtatgtagaaaaagaattaatttgaatatattgacctgatatctgatgaccttgctaaaataatttttcattta--act--------- i canFam2.chr26 I 192 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 217599 669 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=157961.000000 s hg19.chrUn_gl000223 83853 289 + 180455 ttttgtgtgtgacagggtctcactctgtcacccaggctggagtgcagtgatgtgatcccggctcactgcaacctccacctttcgagttcaagtgatactcccgtctcagcctcccgagtagctggaattacaggtgcacgtcaccaccctggctaatttttgtatttttggtaaacaggggctatcaccatgttggctagactggtctcaaactcctgacctcaagtgatcc-gcccaccttggccttccaaagtgctgggattacaggcgtgagtcaccacacctggcc s panTro2.chr12 209180 290 - 135371336 ttttgtgtgtgatagggtctcactctgtcacccaggctggagtgcagtgatgtgatcccggctcactgcaacctccacctttcgagttcaagtgatactcccgtctcagcctcccgagtagctggaattacaggtgcacgtcaccaccctggctaatttttgtatttttggtaaacacgggctatcaccatgttggctagactggtctcaaactcctgacctcaagtgatcctgcccaccttggccttccaaagtgctgggattacaggcgtgagtcaccacacctggcc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 4358 289 + 31489 ttttgtgtgtgatagggtctcactctgtcacccaggctggagtgcagtgatgtgatcccggctcactgcaacctccacctttcgagttcaagcgatactcccgtctcagcctcccgagtagctggaattacaggtgcacgtcaccacnctggctaatttttgtatttttggtaaacatgggctatcaccatgttggctagactggtctcaaactcctgacctcaagtgatct-gcccaccttggccttccaaagtgctgggattacaggcgtgagtcaccacacctggcc i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 248338 289 - 136387465 ttttgtgtgtgacagggtctcactctgtcacccaggctggagtgcagtgatgtgatcccggctcactgcaacctctacctttcgagttcaagcaatactcccttctcagcctcccaagtagctgggattacaggtgcacatcaccaccctggctaatttttgtatttttggtaaagatggggtatcaccatgttggctagactggtctcaaactcctgacctcaagtgatcc-gcccaccttggccttccaaagtgctgggattacaggcgtgagtcaccacacctggcc i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 217599 669 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161229 207 - 94057673 I e canFam2.chr26 3206973 0 + 42029645 C a score=178431.000000 s hg19.chrUn_gl000223 84142 124 + 180455 TCTTTTTAATGATTTGATTTAGAAATGACTCCACAAAACATGAAAGTTTAAAAAG--------TAATATAGAATTTACACAATGATAATGAATTTGTAAATATTCTTTACCAATATTCCTCAAAT-------TTTTACC s ponAbe2.chr12 248627 124 - 136387465 TCTTTTTAATGATTTGATTTAGAAATGACTCCACACAACATGAAAGTTTAAAAAG--------TAATATAGAATTTACACAATGATAATAAATTTGTAAATATTCTTTACCAATATTCCTCAAAT-------TTTTACC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 4647 121 + 31489 TCTTTTTAATGATTTGATTTAGAAATGACTCCACACAACATGAAAGTTTAAAAAG--------TAATATAGAATTTACACA---ATAATGAATTTGTAAATATTCTTTACCAATATTCCTCAAAT-------TTTTACC i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 209470 116 - 135371336 TCTTTTTAATGAT----TTTAGAAATGACTCCACACAACATGAAAGTTTAAAAAG--------TAATATAGAATTTACACAATGATAATGAATTTGTAAATA----TTACCAATATTCCTCAAAT-------TTTTACC i panTro2.chr12 C 0 C 0 s equCab2.chr8 64161436 138 - 94057673 TCTTTTTAACTAttttatttagaaatgatttcatactactgaaaagttgaaaaaatagtacagaaatacagaatttatagaatagtaaagaattc-ctaatatcttttacctaccttccccaaatgttaacatggtacc i equCab2.chr8 I 207 C 0 s canFam2.chr26 3206973 120 + 42029645 ----------------atttaGAAATGATTTGAAACTAGTGAAAAGTCGAaaaaa-atcacagaattacagaatttacagaatagt-aagattcc-taaatacactttacctatattccccagatgttgacattttacc i canFam2.chr26 C 0 C 0 s papHam1.Contig627434 575 108 + 683 ----------------ATTTAGAAATGACTCCATACAACATGAAATTTTAAAGAG--------TAATACAGAATTTACACAATGATAATGAATTTGTAAATATTCTTTACCAAAATTCTTCAAAT-------TTTTACC i papHam1.Contig627434 N 0 N 0 s rheMac2.chr11 218268 108 - 134511895 ----------------ATTTAGAAATGACTCCATACAACATGAAATTTTAAAGAG--------TAATACAGAATTTACACAATGATAATGAATTTGTAAATATTCTTTACCAAAATTCCTCAAAT-------TTTTACC i rheMac2.chr11 I 669 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=32779.000000 s hg19.chrUn_gl000223 84266 46 + 180455 ATGTTAGCTTTCTCTACAAATAAACGtttttctttctttc-tttttt s panTro2.chr12 209586 46 - 135371336 ATGTTAGCTTTCTCTACAAATAAACGtttttctttctttc-tttttt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 4768 29 + 31489 ATGTTAGCTTTCTCTACAAATAAACGTTT------------------ i gorGor1.Supercontig_0000258 C 0 I 7780 s ponAbe2.chr12 248751 47 - 136387465 ATGTTAGCTTTCTCTACAAACAAACGtttttctttctttcttttttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 218376 46 - 134511895 ATGTTAGCTTTCTCTATAAACAAACGtttttctttttttt-tttttt i rheMac2.chr11 C 0 I 24 s equCab2.chr8 64161574 35 - 94057673 atgtctgctttctcgatacgagaacttatttttct------------ i equCab2.chr8 C 0 I 3103 s canFam2.chr26 3207093 25 + 42029645 atgtctgctttctctataaaagaac---------------------- i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I a score=74678.000000 s hg19.chrUn_gl000223 84312 289 + 180455 ctgagac--agtttcactctgtcacccaggctggagtgcagtggtgtgatcccggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccacgcctgggtaatttttgtatttttagtagagacgggggtttcaccatgttggccaggttgttctcaaacgcccaacctcaggtgatccacccgcctcggcctcccaaaatgctaggattacagatgtgagccaccatgcccggccAAATAA s ponAbe2.chr12 248798 291 - 136387465 tttagacagagtttcactctgtcacccaggctggagtgcagtggtgtcatcccagctcactgcaacctttgcctcccgcgttcaagcaattctcctgcctcagcctcccaagtatctgggattacaggtgcccgccaccacgcccaggtaatttttgtatttttagtagagacgggggtttcaccatgttggccaggttggtctcaaactcccaacctcaggtgatccgcccacctcggcctcccaaaatgctgggagtacagaagtgagccactatgcccagccTAATAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 209632 291 - 135371336 ctgagacagagtttcactctgtcacccaggctggagtgcagtggtgtgatcccggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccacgcctgggtaatttttgtatttttagtagagacgggggtttcaccatgttggccaggttggtctcaaacgccgaacctcaggtgatccacccgcctcggactcccaaaatgctaggattacggatgtgagccaccatgcccggccAAATAA i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 218422 24 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207118 0 + 42029645 C a score=8961.000000 s hg19.chrUn_gl000223 84601 21 + 180455 ATGTTTTTCTTGAAATGTATA s panTro2.chr12 209923 21 - 135371336 ATGTTTTTCTTGAAATGTATA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 249089 21 - 136387465 ATGTTTTTCTTGAAATGTATG i ponAbe2.chr12 C 0 C 0 s canFam2.chr26 3207118 21 + 42029645 atacttctcttgaaaggtaga i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 218422 24 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I a score=7807.000000 s hg19.chrUn_gl000223 84622 31 + 180455 AGCATTggcagggcacagtggctcacgcctg s panTro2.chr12 209944 31 - 135371336 AGCATTGGCAGGGCACAGAGGCTCACGTCTG i panTro2.chr12 C 0 I 58 s ponAbe2.chr12 249110 31 - 136387465 AGCATTGACAgggcacggtggctcacgcctg i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 218422 24 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207139 0 + 42029645 C a score=15245.000000 s hg19.chrUn_gl000223 84653 220 + 180455 taatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaacctgtctctactaaaaatataaaaactagctgggcgtggtggtgggcacctgtaatcccagctactcaggaggctgaggctggagaatcacttgaacccaggaggctgaggctggagaatcacttgaacccgggagg s ponAbe2.chr12 249141 188 - 136387465 taaacccagcactttgggaggccgaggtgggtggatcacctgacgtcaggagatcaagaccagcccggccaacatggtgaaaacccatctctactaaaaatataaaaactagccaggcatggtggtgggcacctgtaatcccagctactcaggaggctgaggctggagaatcacttgaaccc--------------------------------gggagg i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 209975 58 - 135371336 I e rheMac2.chr11 218422 24 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207139 0 + 42029645 C a score=19856.000000 s hg19.chrUn_gl000223 84873 111 + 180455 cagaggttgcagtgagccgacacggtgccactgcacttcaaccttggtgacagagtgagattccgtctcaaaaaaaaaaaaaaaaaatgaaaaagaa-aaaaAAAATGTATG s rheMac2.chr11 218446 95 - 134511895 caggggttgcagtgagccaacagggtgccactgcacttcagtctcagtg--agagtgagactctgtctcaaaaaaaaaaaa--------------aa-aaaagaaaTGTATG i rheMac2.chr11 I 24 C 0 s ponAbe2.chr12 249329 105 - 136387465 cagaggttgcagtgagctgacacagtgccactgcttttcaaccttggtgacaaagtgagattccgtctcaaaaaaaaaaaa-------gaaaaagaataaaagaaaTGTATG i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 209975 58 - 135371336 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207139 0 + 42029645 C a score=17080.000000 s hg19.chrUn_gl000223 84984 46 + 180455 AGCATAGGTTGGAGGCATAATTTCTCGACATCCCTAAACACTTCAG s ponAbe2.chr12 249434 46 - 136387465 AACATAGGTTGGAGGCATAATTTCTCGACATCCCTAAACACTTCAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 218541 46 - 134511895 AGCATGGGTTGGAGGCACAATTTCTCGACATCCCTAAACACCTCAG i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3207139 45 + 42029645 agcatgagttgcagacataactcctctatg-ctccgcacactgcag i canFam2.chr26 C 0 I 3235 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 209975 58 - 135371336 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I a score=49317.000000 s hg19.chrUn_gl000223 85030 220 + 180455 Tgttg-agtagtgtcc--ccccaactcaaagagatatgttggggtcctaatttccatacctcagagtgaggccttatttggagagagggtctgtacagagttaacaatgttaaaatgaggacttaggagtcaatatgactgatgtccctataaaaaggggacgtttgcacagagatatgtgcatatagaagggagattatgtgatgagaca--gtgagaagacag s ponAbe2.chr12 249480 219 - 136387465 Tgttg-agtagtgtcc--ccccaactcaaagagatatgttagggtcctaatttccatacctcagagtgaggccttatttggagagagggtcttaacagaggtaacaatgttaaaatgaggacttaggagtcaatatgactgacgtccctataaaaag---aagtttgcacagagatatgtgcatatagacgggagattatgtgatgaggcatagcgagaagacag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 218587 221 - 134511895 TGGTGAAACAgtgtccctccccaactcaaagagatatgttggggtcctaatttccatacctcagagtgacgccttatttg----gagtgtctttacagaggtaataatgttaaaatgaggacttcagagtcattatgactgatgtccctataaaaaggggaagtttggacagagatatgcacatatagaggggagattatgtgatgagacatagtgagaagacag i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e panTro2.chr12 209975 58 - 135371336 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=983104.000000 s hg19.chrUn_gl000223 85250 2070 + 180455 ccatctacaagccaaggagagaggcctggaacagatccttccctcagagccctcagaaggaaccaaaacctgtcaatgccttgatttcaaacatggaggctccagaacagtaagacaatatatctgtgttgtttaagccatccagtttgtggttctttgttacgacagtcctagacaacttatacGAttgttctaatattgaaagtgggatattaagtctccaactagtattgttgagttg------tctctcttcatttctgtcagattttgcttcatgtattttggtg--ctgttattaggtacatacatgtttataattattatatcttcttTTTTGCCTTTT---TTGAGGCAAAATATAAATATATAAACaaaatgtaaatatat----tataaatattatcatcattaccatttttaagtgtacagttcagcaataatagatacattcatatttttCcccttcatccttccccctcttcccagcttctggtaaccacc-atcaactctatcttcatgaggtctacttttttagctttcaaatatgagtgagaacatgcaatatttgtctttctgtgcttggcttatttcacttattataatggctttcagttccatcccagttgctgcaaatgacaggattttatt-----tttatgactgaatagacatattgactgtgtttatatatatcacactttctttatccatttgttgatgggctctgat-tttttttttgttttgttttttgagatggagctttactctgtcgcccaggctggagggcagcagttcaatctcaactcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggtgtctgccaccacaccccgctaacttttgtatttttagtagagacggggtttcaccaggctggtgaagctggtcttgaactcttgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcctgatttcat-tttttggctcttgtggatagtgctgcaggaaacgtgagagtgcaggtgtctctttgatgtactgatttcctttcttttggcttttcacccagtagtggggttgctggatcgtataatagttctattttcagttgctttgaggagcctccatactgttctccatagtggctgtactaatttccactcccaccaacagtgtacgagggctgtccttcctccatatcctcaccagcatctgttctttcctgtctttctgatacaagccattttaactgaagagggatgatatctgattgtgg--ttaatttgcatttctctgataagtggtgatattgagcattttttcatatacctgttagacatttgcatgtcttctctgagaaacgtctgtttggatcttttgcctactttataattggaatatctggagtttggggttttttttt---tgttatttttctttgtttttgctatagagttgtttgagctccctgtatattctggcaattaaccccttgtcaaatggatagtttgcaaatattttctcccaatctgtgggttgtctctttattttgttatttcctcggcagtatggaagcttcccagcttgatgtaatcccaattgtctatttataattgttacatcttcttgatgacttatctttacaaaatacttttctttatctctagtaaaacttttgttttaaactctattgtgtctgatattagaaagccactggagatttattatggttgctgtttgcgttttatatctttttccatcctttacttctaatccaattgtatctttgagtatgtatgtatgtcttctgtacatggttgga-tttttttttatcaccactttgacaatctgtgtcttttgatagtttaatctattcacatttaatgttattactggccaggtgcgctggctcatgcctataatcttgatgcttcgagagaccagaatgggaggattgcttgagccctggagtttgatacctccatctctataaataaataaataaaataaaataaaata-----gccagg---------------------------------tgg s panTro2.chr12 210033 2075 - 135371336 CCATCTACTATCCAaggagagaggcctggaccagatccttccctcagagccctctgaaggaaccaaaacctgacaatgccttgatttcaaacatggagcctccagaacagtaagacaatatatctgtgttgtttaagccatccagtttgtggttctttgttatgacagtcctagacaacttatacGAttgttctaatattgaaagtgggatattaagtctccaactagtattg---agttg------tctctcttcatttctgtcagattttgcttcgtgtattttggtg--ctgttattaggtacatatatgtttataattattatatcttcttTTTTGCCTTTT---TTGAGGCAAAATATAAATATATAAA----ATGTaaatatataatgtataaatattatcatcattaccatttttaagtgtacagttcagcaataataaatacattcatatttttccccttcatccttccccctcttcccagcttctggtaaccacc-atcaactctatcttcatgaggtctacttttttagctttcaaatatgagtgagaacaggcaatatttgtctttctgtgcttggcttatttcacttattataatggctttcagttccatcccagttgctgcaaatgacaggattttatt-cttttttatgactgaatagacatattgactgtgtttatatatatcacactttctttatccatttgttgatgggctctgat-ttttgttttgtttcgttttttgagatggagctttactctgtcgcccaggctggagggcagcagttcaatctcaactcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggtgtctgccaccacaccccgctaacttttgtatttttagtagagacggggtttcaccaggctggtcaagctggtcttgaactcttgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccaccacgcctggcctgatttcat-tttttggctcttgtggatagtgctgcaggaaacgtgggagtgcaggtgtctctttgatgtactgatttcctttcttttggcttttcacccagtagtggggttgctggatcatataatagttctattttcagttgctttgaggagcctccatactgttctccatagtggctgtactaatttccactcccaccaacagtgtacgagggctgtccttcctccatatcctcaccagtatctgttctttcctgtctttctgatacaagccattttaactgaagagggatgatatctgattgtgg--ttagtttgcatctctctgataagtagtgatattgagcattttttcatatacctgttagacatttgcatgtcttctctgagaaacgtctgttcggatcttttgcctactttataattggaatatctggagtttggggggttttttt----gttatttttctttgtttttgctatagagttgtttgagctccctgtatattctggcaattaaccccttgtcaaatggatagtttgcaaatattttctcccaatctgtgggttgtctcttcattttgttatttcctcggcagtatggaagcttcctagcttgatgtaatcccaattgtctatttataattgttacatcttcttgataacttatctttacaaaatacttttctttatctctagtaaaacttttgttttaaactctattgtgtctgatattagaaagccactggagatttattatggttgctgtttgcattttatatctttttccatcctttacttctaatccaattgtatctttgagtatgtatgtatgtctcctgtacatggttgga-tttttttttatcatcactttgacaatctgtgtcttttgatagtttaatctattcacatttaatgttattactggccaggtgcgctggctcatgcctataatcttgatgcttcaagagaccagaatgggaggattgctcgagccctggagtttgatacctccatctctataaataaataaataaaataaaataaaataaaatagccagg---------------------------------tgg i panTro2.chr12 I 58 C 0 s ponAbe2.chr12 249699 2045 - 136387465 ccatctgcaagccaaggagagaggcctggaacagatccttccctcagagccctcagaaggaaccaaaacctgtcaatgccttgatttcaaacatggagcctccagaacagtaagacaatatatctgtgttgtttaagccatccagtttgtggttctttgttacgacagtcctagacaacttatacaCttgttctaatattgaaagtgggatattaagtctccaactagtattgttgagttg------tctctcttcatttctgtcagattttgcttcatgtattttggtg--ctgttattaggtacatatatgtttataattgttgtatcttcttTTTTGCCTTTTTTATTGAGGCAAAATATAAATATGTAAAtaaaatgtagatatataacatataaatattatcatcattaccatttttaagtgtacagttcagcaatgataaatgcattcatatttttCcccttcatctttccccctcttcccagcttctggtaaccaccaatcaactctatcttcacgaggtctacttttttagctttcaaatatgagtgagaacatgcaatctttgtctttctgtgcttggcttatttcacttaatataatgattttcagttacatcccagttgctgcaaatgacaggattttatt-cttttttatgactgaatagacatattgactgtatttatatatatcacattttctttatccatctgttgatgggctctgat-tttttt---------ttttttgagatggagctttactccgtcgcccaggctggagggcagcagttcaatctcaactcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgggactacaggtgtctgccaccacaccccgctaacttttgtatttttagtagagacggggtttcaccaggctggccaagctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgactggcctgatttcat-tttttggcttttgtggatagtgctgcaggaaacatgggcgtgcaggtgtctctttgatgtactgatttcctttcttttggatattcacccagtagtggggttgctggatcatatgatagttctattttcagtttctctgaagagcctccatactgttctccatagtggctgtactaatttccactcccaccaacagtgtacgagggctgtccttcctccatatcctcaccagcatctgttctttcctgtctttctgatacaagccattttaactgaagagggatgatatctgattgtggttttaatttgcatttctctgataattagtgacattgagcattttttcatatacctgttagacatttgcatgtcttctctgagaaac----gtttggatcttttgcctactttataattggagtatttggagtttgggttttttttgttgttgttatttttctttgtttttgctacagagttgtttgagctccctgtatattctggtaattaaccccttgtcaaatggatagtttgcaaatattttctcccaacctgtgggttgtctcttcattttgttgtttcctcggcagtatggaagcttcctagcttgatgtaatccgaattgtctatttataattgttacatcttcttgatgacttatctttgcaaaatact----tttatctctagtaaaacttttgttttaaactctattgtgtctgatattagaaagccactggagatttattatggttgctgtttacattttatatctttttccatcctttacttctaatccaattgtatctttgagtatgtatgtatgtctcctatacatggttggattttttttttatcatcactttgacaatc--tgtcttttgatagtttaatctattcacatttaatgttattactggccaggtgcactggctcatgcctataatcttgatgcttcgagaggccagaatgggaggattgcttgagccctggagtttgatacctccatctctataaat-----aataaaata--------------------------------------------------------- i ponAbe2.chr12 C 0 I 47 s rheMac2.chr11 218808 2048 - 134511895 ccatctacaagcc---gagaggagcctggaacagatccttccctcagagccctcagaaggaacc-aaacctgtcaatgccttgatttcaaacatgtagcctccagaacagtaagacaatgtatctgtgttgtttaagccatccagtttgtgg----ttgttacgacacccctacacaacttacacaATTGTTGTTAtactgaaagtgagatattaagtctccaactagtattgttgagttgtccatttctctcttcatttctgtcagattttgcttgatgtattttggtgctctgttattaggtacatatatgtttacaattgctata---tattttttgccttttttattgaggcaaaat-----tatataaataaaatgtaaatatat--------------atcatcattaccatttttaagtgtacagtttagcaataataaatacattcatatttttccctttcatccctccctctcttcccagcttctggtaaccctt----------atcttcatgaggtccacttttttagcttccaaatatgagtgacaacatgcaatatttgtctttctgtgcttggcttatttcacttaatataatggctttcagttccatcccagttggtgcaaatgataggattttattatttttttatgactgaatagtcatattgactgtatttttatatatcacattttctttattcatctgttgatgcgctcttacgctttcttttttttttttttttgagacggagcttcactctgttgcccaggcttgactgctgtgatgcaatctcaactcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggtgtccaccactacacccag-tactttttgtatttttagtagagacagggtttcaccatgctggccaagctggtcttgaactcctgacctcaagtgatccacccgccttggccttccaaagtgctggaattacaggc--gagacactgcgcccggcctgacttcgtctttttggctcttgtggatagtgccgcaggaaatgtgggagtgcaggtgtccctttgatgtactgatttcctctcttttggatatctacccagtagtggggttgctggatcatatgacagttctattttcagtttttctgaggagcctccatactgttctccatagtggctgtgctaatttacactcccaccaacagtgtacaagggctgcccttcttccatatcctcaccagcgtctgttctttcctgtgtttctgatacaagccattttaactgaagagggatgacatctgattgtagttttaatctgcatttctctgataattagtgatactgagcattttttcatatacctgttagacatttgcatgtcttctct-----------gttcagatcttttgcctactttaaaattgg---atttggagtttgggggattttttt----gttatttttctttgtttttgctatagagttgtttgagctccttgtatattctagtaattagccccttgtcaaatggatagtgtgcaaatattttctcccaatttgtgggttgtctctttattttgtcgtttcctcagcagtatggaagcttcctcccttgatgtaatcccaattgtctatttacaattgttacatcttcttgatgacttatctttataaaatacc--tctctatctctagtaaaacttttattttaaactttattatgttggatattagaaagccactggagatttactatggtggctgtttgcattttatatctttttcaatcctttacttctaatccaattgtatctttgagtatgtacgtatgtctcctacaca----cgga---tttttttatcatcactttgacaatctgtgtcttttgacagtttaatccattcacacttaatgttattactggccaggtgcgctggctcatgcctataatcttggtgctttgagaggccagaatgggaggattgcttgagccctggagcttgagacc-ctatctctataaataa---aataaaata---------------gccaggcatggtggtatgcacctgtagtcccacctactatgg i rheMac2.chr11 C 0 I 5 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=579164.000000 s hg19.chrUn_gl000223 87320 1161 + 180455 gaggtgggagaattgcttgaagccaagagttcaaggctgcagtgagctatgatcatgcaactgcactccagcctgggcaatagagcaagaccctcttaaaaaaaagttattattgatatagttagatttacatatgctgctttcccttttgtattttatgtctcatgtatcttttgttcatctatttctccttcacttttgt------cttaagtgcatattttgtaatgtaatattttatttatttaatgattccttacaatatttttgcagttatttctttagtgtttgttctaggaagtgttaaatacaca-ttaacttatcagagtctacttcagatttatactaccttaattccaataagacttttataaacccattattcctatatagttctagcccccaccccgacttttgtgctggtattgatatatatatctatgttacaaatgcaacaacacattgctataaatattgctttatatattttataatttaaagaggctgagag----atgaagagaaagtatatattaacagcttttgttacagtagcctatttatttcctatttctggttctctcagcttattcttgtggctttaagttgccatctagagccatttccttaccccaacacgactcttctcccatcctcctcctttgtggtgttattggtagacatattacacttctgtatgttatagtccaaacagtactgcatattgttttatataattgc---tttttttgttgctgttattgagacggagtctcactctgttgcccaggctgaagtgcggtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgccccgctaattttttgtgtttttaatagagatggggtttcaccatgttagtgaggatggtcttgacctccagaccttgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcctataat---tattaatcagttactaataaaataagaaatctgcacttgcactatcttttattattacataattaccctttactggtgctctttgttttttctgtggaaacaaattactgcctggggtcattcc s rheMac2.chr11 220861 1157 - 134511895 gaggtgggagaattgcttgaagccaagagttcaaggctgcaatgagctgtgatcatacaactgcactccagcctgggcaacagagcaagaccctcttttaaaaaagttattattgatatagttagatttacataagctgctttcccttttgtattttatgtctcacatattttttattcatctatttctccttcacttttgtctttgccttaagtgcatattttctaatgtaatattttatttctttaattattccttacaatatttttgcagtaatttccttagtgttcattctagggcgtgttaaatacacacttaacttatcagagtctacttcagatttatactaccttaattccaataagatttttataaacccattattcctatatagctctagctcccacccccacttttgtgctggtattgttatata----catgttacaaatgcaacaacacattgttataaatattgctttatatatttt---atttaaagaagctgagagaagaatgaagagaaagtatatattgacagcttttgttacagtagcctatttatttcctatttctggttctctcagcttattcttgtggctttg------cctccagagccatttccttaccccaacatgacttttctcccaccctcctcctttgtggtgttattggcagacatattacacttctgtatgttataatccaaacagtattgcatattgttttatataattgcttttttttttttttttttttttgagacagagtctcg--ctgtcgcccaggctggagtgcagtggtgcgatctcagctcactgcaagctctgcctcccaggttcgcgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccacctcgcccggctag-tttttgtatttttagcagagacggggtttcaccgtgttggccaggatggtcttgatcttctgacctcgtgtttcgcctgcctcggcctcccaaagtgctgagattacaggcgtgagccaccacgcctgatctataataactgttaatcagttattaataaaataaaaaatctgcacttgtactatcttttattattacataactaccctttaCTGGTGCTC-----TTTTTCTGTGGAAACAAATTACTGCCTGGGGTCATTCC i rheMac2.chr11 I 5 C 0 s ponAbe2.chr12 251791 1158 - 136387465 gaggtgggagaattgcttgaagccaagagttcaaggctgcagtgagctatgatcatgcaactgcactccagcctgggcaatagagcaagaccctcttaaaaaaaagttattattgatatagttagatttacatatgctgctttcccttttgtattttatgtctcatgtatcttttgttcatctatttctc-----cttttgt------cttaactgcatattttgtaatgtaatattt--tttctttaatgattccttacaatatttttgcagttatttctttagtgtttgttctaggaagtgttaaatacaca-ttaacttatcagagtctacttcagatttatactaccttaattccaataagatttttataaactgattattcctatacagttctagcccccacccccacttttgtgctggtattgttatatatatctatgttacaaatgcaacaacacattgctataaatattgctttatatattttatcatttaaagaagctgagagaagaatgaagagaaagtatatattaacagcttttgttacagtagcctatttatttcctatttctggttctctcagcttattcttgaggctttaagttgccatctagagccacttccttatcccaacacgacttttctcccaccctcctcctttgtggtgttattggtagacatattatacttctgtatgttatagtccaaacagtattgcatattgttttatataattgc---tttttttgttgctgttgttgagacggagtctcgctctgtcgcccaggctagagtgcagtggcgcaatctgggctcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccatgcctcactaattttttgtatttttaatagagacggggtttcactatgttagtgaggatggtcttgatctccagaccttgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcctataat---tattaatcagttattaatcaaataagaaatctgcacttgcactatcttttattattacataattaccctttaCTGGTGCTCTTTGTTTTTTCTGTGGAAACAAATTACTGCCTGGGGTCATTCC i ponAbe2.chr12 I 47 C 0 s panTro2.chr12 212108 1161 - 135371336 gaggtgggagaattgcttgaagccaagagttcaaggctgcagtgagctatgaccatgcaactgcactccagcctgggcaatagagcaagaccctcttaaaaaaaagttattattgatatagttagatttacatatgctgctttccctttcgtattttatgtctcatgtatcttttgttcatctatttctccttcacttttgt------cttaagtgcatattttgtaatgtaatattttatttatttaatgattccttacaatatttttgcagttatttctttagtgtttgttctaggaagtgttaaatacaca-ttaacttatcagagtctacttcagatttatactaccttaattccaataagacttttataaacccattattcctatatagttctagcccccaccccgacttttgtgctggtattgatatatatatctatgttacaaatgcaacaacacattgctataaatattgctttatatattttatcatttaaagaggctgagag----atgaagagaaagtatatattaacagcttttgttacagtagcctatttatttcctatttctggttctctcagcttattcttgtggctttaagttgccatctagagccatttccttaccccaacacgacttttctcccaccctcctcctttgtggtgttattggtagacatattacacttctgtatgttatagtccaaacagtactgcatattgttttatataattgc---tttttttgttgctgttattgagacggagtctcactctgtcgcccaggctggagtgcggtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagccattctccagcctcagcctcccgagtagctgggactacaggcgcccgccaccacaccccgctaattttttgtgtttttaatagagatggggtttcaccatgttagtgaggatggtcttgatctccagaccttgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgttagccaccacgcctggcctataat---tattaatcagttactaataaaataagaaatctgcacttgcactatcttttattattacataattaccctttaCTGGTGCTCTTTGTTTTTTCTGTGGAAACAAATTACTGCCTGGGGTCATTCC i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 681651 9173 + 1032594 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=9539.000000 s hg19.chrUn_gl000223 88481 29 + 180455 TCAGACTGTTGCT--CTTCAG---TCTCCAAACT s oryCun2.chrUn0106 690824 10 + 1032594 ------------------------tctccaactg i oryCun2.chrUn0106 I 9173 C 0 s tarSyr1.scaffold_50978 10565 6 - 12062 ----------------------------CACATA i tarSyr1.scaffold_50978 N 0 C 0 s choHof1.scaffold_93839 4713 34 - 6272 TCATAATGTTACTGACTTCGGGGTTTTCCAAAAT i choHof1.scaffold_93839 N 0 C 0 s rheMac2.chr11 222018 29 - 134511895 TCAGACTGTTGCT--CTTCAG---TCTCCAAACT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 252949 29 - 136387465 TCAGACTGTTGCT--CTTCAG---TCTCCAAACT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 213269 29 - 135371336 TCAGACTGTTGCT--CTTCAG---TCTCCAAACT i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=146821.000000 s hg19.chrUn_gl000223 88510 158 + 180455 GATCACTGGAAATGAT-GTTAAGTGGAGCTGATCCCGTTCCCACTCCTTGGCTCTTGGACCTGTGTACACTCCCT---------------------------ATTGAGGA-ATCACTACCAGATAAAAGTCTGTGATTCCAGGa-----ctgcatcttggaggacggtgccctgtgcttgtcaagtactgcc s panTro2.chr12 213298 158 - 135371336 GATCACTGGAAATGAT-GTTAAGTGGAGCTGATCCCGTTCCCACTCCTTGGCTCTTGGACCTGTGTATACTCCCT---------------------------ATTGAGGA-GTCACTACCAGATGAAAGTCTGTGATTCCAGGa-----ctgcatcttggaggacggtgccctgtgcttgtcaagtactgcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 252978 158 - 136387465 gatcactggaaatgac-gttaagtggggccgatccgactcccactccttggctcttggacctgtgtatactccct---------------------------gttgagga-atcactaccagataaaagtctgtgattccagga-----ctgcatactggaggacggtgccctgtgcttgtcaagcagtgcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 222047 156 - 134511895 gatcactggaaatgat-gttaagtggggctgatcccattcccactccttggctcttggacgtgtgtgtactccct---------------------------attgagta-atcactaccagataaaagtc--ggattccagga-----ctgcatcttggaggacggtgccctacgcttgtcaagtactgtc i rheMac2.chr11 C 0 C 0 s choHof1.scaffold_93839 4747 153 - 6272 --------GCAGTGATGGTTAAGTGGAGCCACTCCTGCTTCTACTCTTTGGTTCTCAGTGCCATGTATGCATCTT---------------------------ATTGAAGA-ATGAATGTCATA-ACAATTCTTCAATTCAGGGCATTAAATGCATCT--TGGAATGGCACCTCATTCTCACAGAATATTACC i choHof1.scaffold_93839 C 0 N 0 s tarSyr1.scaffold_50978 10571 112 - 12062 GATCACTGGAAGTGAT-GGCCAATTGGGGTGCCCCTACTACCATGTCTTGGTTCTCAGACTTGTATATTCTTCCT---------------------------ACTGTGAA---CAC-ACCATGTAATGGTCATTGATTTAAGAA------------------------------------------------ i tarSyr1.scaffold_50978 C 0 N 0 s oryCun2.chrUn0106 690834 174 + 1032594 cttcattggaagtgat-gttaagtaaggctcttcttactccaattcctttgttcctggaaccatgtgttgttGGTttttgttttgttttgttttgttttATGACTGAGGAAACCAGTAACTTACaaaggtctctgattccagga-----cggcatcctaaagattggtgtcctctgttta------------ i oryCun2.chrUn0106 C 0 C 0 s myoLuc1.scaffold_7383 67307 144 + 315843 GGTCGTTGAGAGTGAA-GGTAAATGGAGTCACTCCTGCTTTCACCCCTTCTTTCCTGGGCTCATCGATCCATCCT---------------------------ATTGGGGA-CACAGCACCACAAAGAGGTCTCTGATTTAATGCATGCCTGGCACCCTGAAGGAGGGCATCCT------------------- i myoLuc1.scaffold_7383 N 0 N 0 s danRer6.Zv8_NA9630 9328 163 + 12590 GATCACTAGGGGTGAT-GGTGAGTGGTGCCACTTCCACTTCCACACCTTGATTCCTGGACTCATGAATCTTGGTT---------------------------ATGGGAGA-AACAGTACCATATATTGGATGCTGATTCAGAGCATACATGGCCTTCTGGAGAATTTTGCCCCAGTCCTGCATAGTATTGTC i danRer6.Zv8_NA9630 N 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=19032.000000 s hg19.chrUn_gl000223 88668 38 + 180455 actaagctggtacttcaaac-caccttcagcaggtcatc- s rheMac2.chr11 222203 38 - 134511895 actaagctggtacttcaacc-caccttcagcaggtcatc- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 253136 37 - 136387465 actaagctggtacttcaaac-caccttcagcaggt-atc- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 213456 38 - 135371336 actaagctggtacttcaaac-caccttcagcaggtcatc- i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 691008 25 + 1032594 --CAagct-----------c-caccttcagcaagccatg- i oryCun2.chrUn0106 C 0 C 0 s echTel1.scaffold_43650 4077 37 - 4515 ACCTAGTTGGCGCCGTAATTGTGTCTTTAGGAGCCCA--- i echTel1.scaffold_43650 N 0 N 0 s danRer6.Zv8_NA9630 9491 40 + 12590 ACCTAGTTGGCATTGTACTTATGACTCCAAAAGGCAGTAC i danRer6.Zv8_NA9630 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=11191.000000 s hg19.chrUn_gl000223 88706 23 + 180455 caatgct--------------ctg-tcacacc--------------------agccgc s oryCun2.chrUn0106 691033 24 + 1032594 caatgct--------------ctactcacacc--------------------agcagc i oryCun2.chrUn0106 C 0 C 0 s otoGar1.scaffold_81449.1-45666 633 57 + 45666 cagtgcttctcaaccttcctaatg-ccgcagccctttaatacagttcctgtgggtcgc i otoGar1.scaffold_81449.1-45666 N 0 I 35628 s rheMac2.chr11 222241 21 - 134511895 cgatg----------------ctg-tcacacc--------------------agcagc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 253173 23 - 136387465 caatgct--------------ctg-tcacacc--------------------agccgc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 213494 23 - 135371336 caatgct--------------ctg-tcacacc--------------------agccgc i panTro2.chr12 C 0 C 0 s danRer6.Zv8_NA9630 9531 23 + 12590 CACTGTT--------------GTA-TCAATTC--------------------AGCTGA i danRer6.Zv8_NA9630 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=81742.000000 s hg19.chrUn_gl000223 88729 115 + 180455 ttctaggtggtggggtaagcataaggtgtgaccaatagatc----agtcatgggaccaccactgaaccttatctgtggtaaagtgggtctccttgtctaatgccctgccatgtgggatA s rheMac2.chr11 222262 119 - 134511895 ttctaggtggtgaggtaagcataaggtgtgagcaatagatcccttggttatgggaccaccactgcaccttacctgtggtgaagtgggtctccttgtctaatgccctgtcatgtgggata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 253196 107 - 136387465 ttctaggtggtggggtaagcataa--------caatagatc----agtcatgggaccaccactgcactttatctgtggtaaagtgggtctccttgtctaaagccctgtcatgtgggata i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 213517 115 - 135371336 ttctaggtggtggggtaagcataaggtgtgaccaatagatc----agtcatgggaccaccactgaaccttatctgtggtaaagtgggtctccttgtctaatgccctggcatgtgggata i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 691057 106 + 1032594 ttccaggtggtggagtgtg-------tgggaccagtaccttctttggtcatggaaccactcctgcaccttatttgtggtaaactgggtctcccagtctaatacattgtcatgt------ i oryCun2.chrUn0106 C 0 C 0 s danRer6.Zv8_NA9630 9554 115 + 12590 TTCAGGAAGATGGG----GCACATGGTAAGACCAATGAATTCCATCAGCATGAGCTCACTGCCACACTTCTTTAACCATAAAGTGAGTGCCTTGGTCAAAGGCAATGTTCTGTGGAATA i danRer6.Zv8_NA9630 C 0 N 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=244160.000000 s hg19.chrUn_gl000223 88844 358 + 180455 ATCAGAATCTCTACTCCCCTAAAAATTATTA----GACTTCTTCCAATGTTACATACTGTTATTTTCTGGGGCTTATTTCCATATTTTTGTACCATCAAATTACA---------TCTTATAATTTTTAAGTCTGTTTAGATTTGGCCGAGCATGACTTTTTATTTTT-----TTATGTTTCCaactttcttggtattaaatattttg-----------tttaaaatgacattatttcaccctggtttgtgaataaccc-----ttctaggtagatattttctttcagaacattga------agacattcttttactgtcttctgatttttactgttgctattgagaagtcaacCTAAGCATGTAAAATTGGAAAAGGGCAACTCAATGATAAAATATC s rheMac2.chr11 222381 372 - 134511895 ATCAGAATCTCTACTCTCCTAAAAATTATTAAATAGACTTCTTCCATTGTTACATACTATTATTTTCTGGGGTTTATTTCCATATTTTTGTACCACCAAATTACA---------TCTTATGATTTTTAAGTCTGTTTAGATTTGGCCAAGCATGACTTTTTATTTTTTTGACTTATGTTTCCAACTTTCTTAGTATTAAATATTTTG-----------TTTAAAATGACATTATTTCACCGTGGTTTGTGAATAACCCTTCTattctaagtagatgttttctttcagcacattga------agacattcttttactgtcttctgatgtttactgctgctattgagaaatcaacCTAAGCATGTAAAATTGGAAAAGGGCAACTCAATGATAAAATATC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 253303 367 - 136387465 ATCAGAATCTCTACTCTCCTAAAAATTATTAAATAGACTTCTTCCAATGTTACATACTATTATTTTCTGGGGCTTATTTCCATATTTTTGTACCATCAAATTACA---------TCTTATAATTTTTACGTCTGTTTAGATTTGGCCAAGCATGACTTTTTATTTTT-----TTATGTTTCCaactttcttagtattaaatattttg-----------tttaaaatgacattatttcaccctggcttgtgaataacccttctattctaggtagatattttctttcagcacattga------agacattcttttactgtcttctgatttttactgttgctattgagaagtcaacCTAAGCATGTAAAATTGGAAAAGGGCAACTCAGTGATAAAATATC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 213632 362 - 135371336 ATCAGAATCTCTACTCTCCTAAAAATTATTAAATAGACTTCTTCCAATGTTACATACTGTTATTTTCTGGGGCTTATTTCCATATTTTTGTACCATCAAATTACA---------TCTTATAATTTTTAAGTCTGTTTAGATTTGGCCAAGCATGACTTTTTATTTTT-----TTATGTTTCCAACTTTCTTGGTATTAAATATTTTG-----------TTTAAAATGACATTATTTCACCCTGGTTTGTGAATAACCC-----ttctaggtagatattttctttcagaacattga------agacattcttttactgtcttctgatttttactgttgctattgacaagtcaacCTAAGCATGTAAAATTGGAAAAGGGCAACTCAATGATAAAATATC i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 691163 369 + 1032594 ---agtatCTCTGCTCTTCTACAAATAATT-----GTCTTCTTCCAAAATTAAATGCTATTGTTTCCTGAGGTTTAAGCTCATTATTCTATACTCTCAAATTACAAGGTACCATTCTCATTAGTTTT---TCCGTTTAGATTTGTCCAAAAATGCTTTTTTTATTTT--GGCTTGtgtttcaaacttt-------ttaaatattttgctttgttagtattcaaagttaca-----tcaccctaatctatgagtaactctttatttttaggta----ttttccttcaacatacttaagtgttagctttttttttaatatcttctgattttcattgttgctgttgaaaaatctgcCTAAGCATGTAAAATTGGAAGATAGCAATTCAACTATAAAATATC i oryCun2.chrUn0106 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=190236.000000 s hg19.chrUn_gl000223 89202 383 + 180455 AGACTTTCAACTAATATTCCCATCCTTACAACCTCCAATGATGGTATCTCATAACATATTACAAATACCAAGAGAGTAGAAttttttttttttttt------gagtcaaggtcttgctctgtcacccaggctggagtgcagtggtacaaatatggcttactgcagcttcaacctcctgggctcaagcaatcctcctgcctcagcctccagagtagctgggaccacagccctaagccaccatcccggggta---------ttttttttttttcagagatggggttttgctttgttgtccagactggtctcaaattcctgagctcaag---tgatcctcctgcctcccaaagtgttgggattataggcataagccactgcacccagccAGAGTAGGGCTGATT s panTro2.chr12 213994 385 - 135371336 AGACTTTCAACTAATATTCCCATCCTTACAACCTCCAATGATGGTATCTCATAACATATTACAAATACCAAGAGAGTAGAAttttttttttttttt----ttgagacaaggtcttgctttgtcacccaggctggagtgcagtggtacaaatatggcttactgcagcctcaatctcctgggctcaagcaatcctcctgcctcagcctccagagtagctgggaccacagccctaagccaccatcccagggta---------ttttttttttttcagagatggggttttgctttgttgtccagactggtctcaaattcctgagctcaag---tgatcctcctgcctcccaaagtgttgggattataggcataagccactgcactcagccAGAGTAGGGCTGATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 253670 393 - 136387465 AGACTTTCAACTAATATTCCCATCCTTACAACCTCCAATGATGATATCTCATAACATATTACAAATACCAAGAGAGTAGAAttttttttttttttttttttttagacaaggtcttgctctgtcacccaggctggagtacagtggtacaaatatggcttactgcagcctcaacctcctgggctcaagcaatcctcctgcctcagcctccagagtagctgggaccacagccctaagccaccatcccggggta--------ttttttttttttttagagatggggttttgctttgttgtccagactggtctcaaattcctgagctcaagtgatgatcctcctgcctcccaaagtgttgggattataggcataagccactgcacctagccAGAGTAGGGCTGATT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 222753 389 - 134511895 AGACTTTCAACTAATATTCCCATCCTTACAACCTCC-ATGATGATATCTGATAACATATTACAAATACAAACAGAAt----tttttttcttccttt----ctgagacaaagtcttcctctgtcacccaggctggagtgcagtggcacaaatatggcttactgcagcctcaacctcctgggctcaagcaatcctctgacctcagtctccagagtagctgggaccacagccataatccactatgcctgggtattttttttttttttttttttttagagctagggtcttgctttgttgtccagacgggtctcaaattcttgagctcaag---tgatcctcctgcctcccaaagtgttgggattatagggataagccactgcacccagccAGAGTAGGGCTGATT i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691532 0 + 1032594 C e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=66621.000000 s hg19.chrUn_gl000223 89585 121 + 180455 TTAAATTTTAGACTTTGGCCCCAAAGTGAGCTGTT------ATTTTCCTTTTACTGTGATGCTCttaaaatagttaaaaaaaaaaaaaaaaa-----GTAGCTAAATTGTTTTTAAAAATTAAGGATGCTCT s rheMac2.chr11 223142 117 - 134511895 TTAAATTTCATACTTGGGCCCCAAAGTGAGCTGTT------ATTTTCCTTTTACTGTAATGCTCTaaaa------aaaaaaaaaaaaaaaaa---GCGCAGCTAAATTGTTTTTCAAAATTAAGGTTGCTCT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 254063 123 - 136387465 TTAAATTTTAGATTTTGGCCTCAAAGTGAGCTGTT------ATTTTCCTTTTACTGTGATGCTCTTAAAATAGTaaaaaaaaaaaaaaaaaa---aaGTAGCTAAATTGTTTTTAAAAATTAAGGTTGCTCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 214379 126 - 135371336 TTAAATTTTAGACTTTGGCCCCAAAGTGAGCTGTT------ATTTTCCTTTTACTGTGATGCTCTTAAAATAGTaaaaaaaaaaaaaaaaaaaaaaaGTAGCTAAATTGTTTTTAAAAATTAAGGTTGCTCT i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 691532 102 + 1032594 TTAAATTCTAATCTTGGAA--CAAATTTAACTGTTCTTTTACTTTTCCTTTCAGTTTGATGCTCTTA----------------------------GTACAGCTATATTGATTTCAAAAATTAGGTATGCTCT i oryCun2.chrUn0106 C 0 I 78 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0000258 4797 7780 + 31489 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=195002.000000 s hg19.chrUn_gl000223 89706 249 + 180455 ggccgggtacgatggctcatgcctgtaatcctagcactttgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccatcctggccaaaatggtgaaaccccatctctactaaaaatac--aaaaattagccaggtgtggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacctgaaccccagaggcggaagttgcagtgagccgagatcacgccactgcac s panTro2.chr12 214505 249 - 135371336 agccgggtacgatggctcatgcctgtaatcccagcactttgggaagccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaaaatggtgaaaccccatctctactaaaaatac--aaaaattagccaggtgtggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacctgaaccccagaggcggaagttgcagtgagccgagatcacgccactgcac i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 12577 249 + 31489 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcac--aaggtcacgagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatgcaaaaaaagtagccgggcgtggtagcgggcgcctgtagtcccagctactcaggaggctgagggaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgtgccactgcac i gorGor1.Supercontig_0000258 I 7780 C 0 s ponAbe2.chr12 254186 238 - 136387465 ggccgagtatgatggctcatgcctgtaatcccagcactttgggaggccgaggcgggt-----------ggtcaggagtttgagaccagcctggccaaaatggtgaaaccccatctctactaaaaatac--aaaaattagccaggcgtggtggcaggtgcctgtaaccccagctactcaggaggctgaggcaggagaatcacctgaaccccagaggcggaggttgcagtgagccgagatcacgccactgcat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 223259 249 - 134511895 ggccaggtacggtggctcacgccagtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcatgaccagcctggccaaaatggtgaaaccccgtctctactaaaaatac--aaaaattagccgggcgtggtggcgcgtgcctgtaatctcagctactcaggaggctgaagcaggagaatcacctgaaccccagaggcggaagttgcagtgggccaagatcacgccaccgcac i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=73422.000000 s hg19.chrUn_gl000223 89955 88 + 180455 tccagcatgggtgacacagtgagactctgtctcaaaaaaaaaaaaaaaaa-------------------aaaTTACCCCTACACTTTTTCACAATAAACCTTAGATC s rheMac2.chr11 223508 88 - 134511895 tccagcatgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaaa-------------------aaaTTACCCCTACACTTTTTCACAATAAACCTTAAATC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 254424 105 - 136387465 tccagcatgggtgacacagtcagactctgtctcaaaaaaaaaaaataaaaataaaaaataaaaa--ataaaaTTACCCCTACACTTTTTCACAACAAACCTTAAATC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 12826 84 + 31489 tccagcctgggcgacagagggagactccgtctcaaaaaaaaaaaaa-----------------------aaaTTACCCCTACACTTCTTCACAATAAACCTTAGATC i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 214754 89 - 135371336 tccagcatgggtgacacagtgagactctgtctcaaaaaaaaaaaaaaaaa------------------gaaaTTACCCCTACACTTTTTCACAATAAACCTTAGATC i panTro2.chr12 C 0 C 0 s dipOrd1.scaffold_24709 15617 101 - 19830 tccagcctgagctacatagggataccatgtctcaaaacaaaacacaaCAAAACAGGAAGGGGGCTTGTGAGATT----CTACAGTATGT-AAAGTATACCTTA-ATC i dipOrd1.scaffold_24709 N 0 N 0 e dasNov2.scaffold_262 321752 0 + 328232 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 113049 1351 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=19725.000000 s hg19.chrUn_gl000223 90043 20 + 180455 TTCAAGACACTCAC--------------AAAACC s loxAfr3.scaffold_113 114400 6 - 3408981 ----------------------------AAAAAC i loxAfr3.scaffold_113 I 1351 C 0 s dasNov2.scaffold_7587 73950 34 + 154172 TTCAAGACACTGTTAATGATCAATAGAAAAAAAC i dasNov2.scaffold_7587 I 8382 C 0 s rheMac2.chr11 223596 20 - 134511895 TTCAAGACACTCAC--------------AAAACC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 254529 20 - 136387465 TTCAAGACACTCAC--------------AAAACC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 12910 20 + 31489 TTCAAGACACTCAC--------------AAAACC i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 214843 20 - 135371336 TTCAAGACACTCAC--------------AAAACC i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrIX 709017 4 - 20249479 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=128295.000000 s hg19.chrUn_gl000223 90063 138 + 180455 AAAAGCCACTTCCTTCTCTCAACACTTACCCCCAAGACAAATGAAGATATATGGAAATATATGGCATACCTAGTT--CAGACTTCTATTAAAGAGTCACACAAACATTCCATCAATAAACATGCAGCATGAATTTCTAAA s panTro2.chr12 214863 138 - 135371336 AAAAGCCACTTCCTTCTCTCAACACTTACCCCCAAGACAAATGAAGATATATGGAAATATATGGCATACCTAGTT--CAGACTTCTATTAAAGAGTCACACAAACATTCCATCAATAAACAAGCAGCATGAATTTCTAAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 12930 138 + 31489 AAAAGCCACTTCCTTCTCTCAACACTTACCCCCAAGACAAATGAAGATATATGGAAATCTATGGCATACCTAGTT--CAGACTTCTATTAAAGAGTCACACAAACATTCCATCAATAAACATGCAGCATGAATTTCTAAA i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 254549 138 - 136387465 AAAAGCCACTTCCTTCTCTCAACACTTACCCCCAAGACATATGAAGATATATGGAAACATATGGCATACCTAGTT--CAGACTTCTATTAAAGAGTCACACAAACATTCCATCAATAAACATCCAGCATGAATTTCTACA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 223616 114 - 134511895 AAAAGTCACTTCCTTCTCCCAACACTTACCCCCA--------------------AAATACATGGCAGACTTAGTT--CAGACTTCTATTAAAGAGT----TAAAAATTCCATCAATAAACATCCAGCATGAATTTCTAAA i rheMac2.chr11 C 0 C 0 s dasNov2.scaffold_7587 73984 123 + 154172 AAAAGCCATGTCCTTCTTTTACTACTTGCCCCCAAA------------ATATTAATATATAGTGCATATGTAATT--CAGATTGCTGGTAAGAAGTTAAACAAAAATTTCAACAATGAACTTC---TATGTGTTTCTAAA i dasNov2.scaffold_7587 C 0 I 6 s loxAfr3.scaffold_113 114406 90 - 3408981 AAAAGCCACTTCCTTCTCTCAGCCCTTGCCCCACA---------------------ATTTATGGCGTATCTAATC--GAGACTGCT-GTCAAAAATTAAACAAAAATTTCAACA-------------------------- i loxAfr3.scaffold_113 C 0 I 497 s gasAcu1.chrX 15546396 126 + 15657440 AAAGTTAACCTCCTCCACTTGGCACGTTTCGAGCAGACGATTGTGGGAAAAAATAATTTCATATCA-ACACAATTACGAGAGATCTACTGTAGCAGAATACAAA--------CTATGATACTACAACGTGATAAT----- i gasAcu1.chrX n 4 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=219181.000000 s hg19.chrUn_gl000223 90201 247 + 180455 TAAACG-TCTGCTTGAAGCACTTTT--------ATTTGCCAGTAGAAGTAATATTTCCAACTGTCTCAGGTCAAGAGTTCCTTTTGGCCTC---CAGCCTG---ATCT----C-AGACTGGAC------TTTCCTCTTTGGGAACTC---CTATGCC-CT------CTACTCAGAAGACTGTCCTCTTGGCTTCTTTTGGCTTTTCAGCAACATTGACATTTGTCTTCTGTA--TTATTATTATATAGtttgtt----tatttatttt-tactttttacagatatgaggt s panTro2.chr12 215001 252 - 135371336 TAAACG-TCTGCTTGAAGCACTTTT--------ATTTGCCAGTAGAAGTAATATTTCCAACTGTCTCAGGTCAAGAGTTCCTTTTGGCCTC---CAGCCTG---ATCT----CAAGACTGGAC------TTTCCTCTTTGGGAACTC---CTATGCC-CT------CTACTCAGAAGACTGTCCTCTTGGCTTCTTTTGGCTTTTCAGCAACATTGACATTTGTCTTCTGTA--TTATTATTATATAGtttgtttatgtatttatttt-tactttttacagatatgaggt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 13068 251 + 31489 TAAACG-TCTGCTTGAAGCACTTTT--------ATTTGCCAGTAGAAGTAATATTTCCAACTGTCTCAGGTCAAGAGTTCCTTTTGGCCTC---CAGCCTG---ATCT----C-AGACTGGAC------TTTCCTCTTTGGGAACTC---CTATGCC-CT------CTACTCAGAAGACTGTCCTCTTGGCTTCTTTTGGCTTTTCAGCAACATTGACATTTGTCTTCTGTA--TTATTATTATATAGTCTGTTTATGTAtttatttt-tactttttacagatatgaggt i gorGor1.Supercontig_0000258 C 0 C 0 s ponAbe2.chr12 254687 244 - 136387465 TAAACG-TCTGCTTGAAGCACTTTT--------ATTTGCCAGTAGAAGTAATATTTCCAACTGCCTCAGGTCAAGAGTTCCTTTTGGCCTC---CAACCTG---ATC-------TGACTGAAC------TTTCCTCTTTGGGAACTC---CTATGCC-CT------CTACTCAGAAGACTGTCCTCTTGGCTTCTTTTGGTTTTTCAGCAACATTGACATTTGTCTTCTATA--TTATTATAATATAGTTTATG----TAttta-ttt-tactttttacagatatgaggt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 223730 217 - 134511895 TAAATG-TCTGCTTGAAGCACTTCT--------ATTTGCCAGTAGAAGTAATATATTCAACTGTCTCAGGTCAAGAGTTCCTTTTGGCCTC---CAGCCTG---ATTT----C-AGACTGGAC------TTTCCTCTTTGGGAACTC---CTCTGCC-CT------CTACTC--AAGACTGTCCTCTCGGCTGCTTTTGGCTTTTCAGCATCATTGACATTTGTCTTCTTTA--CTATTATTATATAGTTTGTT----TAT----------------------------- i rheMac2.chr11 C 0 I 806 s loxAfr3.scaffold_113 114993 184 - 3408981 TAAACT-TTTGCTTAAAGCACGATTAAAAAAAAAAAAG-----------------------------AGTTC-----CTCTTTTTAGCCTC---CATCCCCATAATTT----C-ACACTGGAC------TCTCGTCTTCAGGAGCTCCTTCTGTGCCCCT------CTACCTAGAATACTGTGCTCTTGGCGTCTTTTAGCTTATCAGCAACATCAACACTGGTCTTCTCT---TTACCTTT------------------------------------------------ i loxAfr3.scaffold_113 I 497 I 20 s dasNov2.scaffold_7587 74113 238 + 154172 TCCACTGTCTGCATGAAACACTACCGGCAGAATATATGCCAGTAGAAATAATATTTTCAACCATTTCAGTTCCAGAGCTCCTTTTAGCTTC---CAACCCC---ACTT----C-TGACTGGAC------ACTCCCCTTTGGGAACTGCTTCTGTGCCATT------CTACTCAGAAGATCGTGCTCTTGACTTCTTTTGGCTTCTCAGCAATATCAACATTGGTTTTCTTTATCTTCCTTTTTCTAATTCTGTTT----------------CTATTA------------- i dasNov2.scaffold_7587 I 6 I 2 s gasAcu1.chrX 15546522 229 + 15657440 TAAAGC-TTTGTTT-------TTTT--------CTCATTTAGTA--------------------CTAAGGC---GTGTGCCTCAAAGACTCGTGCACCCTC---AGATGAAGC-AGTCTGGACAGAGAACATCCTCATTGAAAAT-----CATCGCC-ATTTTGAGTTACTTTTAAAACTGTATTTGCACTTTCGCTTTACTTTTAAACGTTTTCTATTACTATTTAATGTA--TTATGATTACATTTT---------TATTAACTTGATACTCAA-ATACATTTGAAGT i gasAcu1.chrX C 0 n 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=60793.000000 s hg19.chrUn_gl000223 90448 120 + 180455 cttgccctgtcatccaggctgaaacacaatcatggctcactgcatcctcaaccttctgggctgaagcgacactcctgcctcagcctcccaagtagctgggaccataggAAAGCATCTTA--T s ponAbe2.chr12 254931 121 - 136387465 cttgccctctcatccaggctggaatacaatcatggctcactgcatcctc-acctcttgggaggaagcgaccctcctgcctcagcctcccaagtagctgggactataggcAAGCATCttattt i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 13319 120 + 31489 cttgccctgtcatccaggctgaaatacaatcatggctcactgcatcctcaaccttctgggctgaagcgacactcctgcctcagcctcccaagtagctgggaccataggAAAGCATCTTA--T i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 215253 120 - 135371336 cttgccctgtcatccaggctgaaatacaatcatggctcactgcatcctcaaccttctgggctgaagcgacactcctgcctcagcctcccaagtagctgggactataggAAAGCATCTTA--T i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 74351 2 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e otoGar1.scaffold_81449.1-45666 690 35628 + 45666 I e loxAfr3.scaffold_113 115177 20 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e rheMac2.chr11 223947 806 - 134511895 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=28238.000000 s hg19.chrUn_gl000223 90568 34 + 180455 TTTTTTTCATTTTTTAGTTCTCTTTCTTATTCTT s otoGar1.scaffold_73976.1-64926 20650 33 + 64926 -TTTTTTCATTTGTTGGTACACTTTCCTATTCTT i otoGar1.scaffold_73976.1-64926 n 35628 I 2 s ponAbe2.chr12 255052 34 - 136387465 ttttttttattttttaattCTCTTTCTCATTCTT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 13439 34 + 31489 TTTTTTTCATTTTTTAGTTCTCTTTCTTATTCTT i gorGor1.Supercontig_0000258 C 0 C 0 s panTro2.chr12 215373 34 - 135371336 TTTTTTTCATTTTTTAGTTCTCTTTCTTATTCTT i panTro2.chr12 C 0 C 0 s rheMac2.chr11 224753 13 - 134511895 ---------------------CTTTCTTATTCTT i rheMac2.chr11 I 806 C 0 e dasNov2.scaffold_7587 74351 2 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e loxAfr3.scaffold_113 115177 20 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=104254.000000 s hg19.chrUn_gl000223 90602 102 + 180455 TTGCCACAAGTTGATAATTGAGGCCGATGCAAGTGAAGACATAGATACATGCCA----CAGTTAGGATTGTGTCATATACACAGAACATGTGT---TTGTCAttttctt s ponAbe2.chr12 255086 102 - 136387465 TTGCCACAAGTTGATAATTGAGGCCGATGCAACTGAAGATATAGATACATGCCA----CAGTTAGGATTGTGTCATATACACAGAACATGTGT---TTGTCAttttctt i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0000258 13473 102 + 31489 TTGCCACAAGTTGATAATTGAGGCCGATGCAAGTGAAGACATAGATACATGCCA----CAGTTAGGATTGTGTCATATACACAGAACATGTGT---TTGTCATTTTCTT i gorGor1.Supercontig_0000258 C 0 N 0 s panTro2.chr12 215407 102 - 135371336 TTGCCACAAGTTGATAATTGAGGCCGATGCAAGTGAAGACATAGATACATGCCA----CAGTTAGGATTGTGTCATATACACAGAACATGTGT---TTGTCAttttctt i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_73976.1-64926 20685 76 + 64926 TGGTCTTAAGTTAAT-------GTTCATGC-AGTATATCTATAGAGGGGAACCAACTCTTACCAAGAGTG--------GTATGGTACATCTC----------------- i otoGar1.scaffold_73976.1-64926 I 2 C 0 s rheMac2.chr11 224766 98 - 134511895 TTGCCACAAGTTGATCATTGAGGCCCGTGCAAGTGAAGATATAGACACGTGCCA----CAGTTAAGACTGCGCCATATACACAGTACATGTGT---CTTTGAttt---- i rheMac2.chr11 C 0 C 0 s loxAfr3.scaffold_113 115197 91 - 3408981 TTGCCACAAACCAATAACTGATGCCCATGCCACTGAAGATATAAATACTTGCCA----CAATTATGATTATGTCAG--CCACAGCATGTGTAT---TTGT--------- i loxAfr3.scaffold_113 I 20 I 2556 s dasNov2.scaffold_7587 74353 100 + 154172 TTCTCACCAGCTGATTA-TGATGCCCACGTTAATGAAGATATAGCTACCTGCTA----CTATTAGGATTATACCAC--ACACACGGTATGTATTACTTGTGGTTTTC-- i dasNov2.scaffold_7587 I 2 I 3546 e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=120863.000000 s hg19.chrUn_gl000223 90704 241 + 180455 ttctttttttttttttttttga-gacagagtctcactctgtcacccaggctggagtgc---aatggcgcaatctctgctcactgccacctccacctcccgggttccagcgattctcctgcctcagcctcccaagtagctgggatt--------acaggcgcccgccaccatgcccgac-taatttttgtatttttagttgagacgggatttcaccatattggccaggctgaactcgaactcccgaccttgtgat s panTro2.chr12 215509 240 - 135371336 ttc-ttttttttttttttttga-gacagagtctcactctgtaacccaggctggagtgc---agtggcgcaatctctgctcactgccacctccacctcccgggttccagcgattctcctgcctcagcctcccgagtagctgggatt--------acaggcgcccgccaccatgcccgac-taatttttgtatttttagttgagacgggatttcaccatattggccaggctgaactcgaactcccgaccttgtgat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 255188 241 - 136387465 ttctttttttttttttttttga-gacagagtctcactctgtagcccaggctagagtac---agtggtgcaatctctgctcactgccacctccacctttctgtttcacgccattctcctgcctcagcctcccgagtagctgggatt--------acaggcgcccaccaccatgcctgac-taatttttgtatttttagttgagatgggatttcaccatattggccaggctggtctcgaactcccgaccttgtgat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 224864 238 - 134511895 ---gtttttttcctttttttga-gacagagtctcactctgtcaccgaaggtggagtgt---agtggcatgatttctgctcactgaaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatt--------acaggcgcccgccaccatgcctggc-taatttttgtatttttagttgaaacgggatttcaccatattggccaggctggtctcgaactcccaaccttgtgat i rheMac2.chr11 C 0 I 2375 s otoGar1.scaffold_73976.1-64926 20761 205 + 64926 TCCTCAGCTCTGTGTTCCCTGATGTCATAATGGTACCTGGCAACT--AGCCAGGATgctcaagtgatctatcctctact-----------------------------------------ctcagcctcatgagtagctgggactccctagtagctggcatataccactatgcttggcttactttttctgattttcttagagactgagggtctttcttttgctcattctgatctgaaactccatgtct------ i otoGar1.scaffold_73976.1-64926 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e loxAfr3.scaffold_113 115288 2556 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=32536.000000 s hg19.chrUn_gl000223 90945 48 + 180455 ccacccacctt--------ggcctcccaa-agtgctgggattacaggcgtgagccac s rheMac2.chr11 227477 48 - 134511895 ccacccgcctt--------ggcctcccaa-agtgctgggattacaggggtgatccac i rheMac2.chr11 I 2375 C 0 s ponAbe2.chr12 255429 48 - 136387465 ccacccacctt--------ggcctcccaa-agtgctgggattacaggcgtgagccac i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 215749 48 - 135371336 ccacccacctt--------ggcctcccaa-agtgctgggattacaggcgtgagccac i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_73976.1-64926 20966 57 + 64926 caaccaatcttcttgttggggcctcccaagagtactagtattacagtcctgaggtac i otoGar1.scaffold_73976.1-64926 C 0 I 6 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_27569 7686 0 - 11810 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e loxAfr3.scaffold_113 115288 2556 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=118900.000000 s hg19.chrUn_gl000223 90993 152 + 180455 cacgcccggcc-------AGTAGCTACTACTTTCAATAACACACTTTTATTGGGTCTTGGTGGAGGGAGAGGGCTGAGG--GTCTTAGGAACACATAATGGATACAAT-C-----------------------CAGCATGTCACAAAG-----------------CATTATCATTCTTTCTTCTAGATTAT------------------------------------GGCAAAGTTCC s rheMac2.chr11 227525 153 - 134511895 cacgcccagcc-------AGCAGCTACTACTTTCAATAACACATTTGTGTTGGGTCTTGGTGGAGGGAGAAGGCTTAGG--GTCTTAGGAACACATAGTGGATTCAATCC-----------------------CAGCATGTCACAAAG-----------------CATTACCATTCTTTCTTCTAGATTAT------------------------------------GGCAAAGTTCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 255477 152 - 136387465 cacgcctggcc-------AGCAGCTACTACTTTCAATAACACATTTTTATTGGCTCTTGGTGGAGGGAAAGGGCTTAGG--GTCTTAGGAACACATAATGGATCCAAT-C-----------------------CAGCATGTCACAAAG-----------------CATTATCATTCTTTCTTCTAGATTAT------------------------------------GGCAAAGTTCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 215797 152 - 135371336 cacgcccggcc-------AGTAGCTACTACTTTCAATAACACACTTTTATTGGGTCTTGGTGGAGGGAGAGGGCTGAGG--GTCTTAGGAACACATAATGGATACAAT-C-----------------------CAGCATGTCACAAAG-----------------CATTATCATTCTTTCTTCTAGATTAT------------------------------------GGCAAAGTTCC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_19586 8553 162 + 14835 CATTCCCAGCCTACAGAGAGTAGCTGATACTTTCAATAATACATTTTTTCTGGGCCTTGGTGAAGAGAAAGGGTTTAGG--GTCATGAGAACACATAATGGATCCAAT-CTGA--------------------TATGATGTTACAAAG-----------------CATTACAATTCTTCCTTCTATATTAT------------------------------------GGTAAAGTTTC i micMur1.scaffold_19586 n 0 C 0 s otoGar1.scaffold_73976.1-64926 21029 218 + 64926 tggTCAAGGCTCATTTATAGTATTCTATTTTATTCCTAGAATAATTTGT---GTTCATTGTATGGACCAGAAGTCTAGG--ATCACAAG--------------CCAAT-CTGAACCATCACTTCTTTGGCAAGTAAAGTTTTATAAAAAGCTAGTCATGCCTATTTATTACAAATAGTCTAGAATTATTATTATATACAACATAAGACTTGGTATTCCTGACTAGTGAGCAAAGTTCC i otoGar1.scaffold_73976.1-64926 I 6 I 174 s choHof1.scaffold_177942 388 107 - 3798 ---------CC-------AACAGCTGCTGTTTTCAGTAATACATTCCTC-TTGGTC-------------------------TTCTGGGGAA-------------CAAT-CCAG--------------------CACGATGTCACAAAG-----------------TATCACAATTCTTCCCTCTATATTAT--------------------------------------GGCAGTTTC i choHof1.scaffold_177942 N 0 C 0 s loxAfr3.scaffold_113 117844 150 - 3408981 -----CCAGGA-------AGCGACTGCTGCTTTCAGTAACACACTTCTG-TGGATCTTGATGAAG-GACAGGGCTCAGGCTTTGTGGGGGACACATAATGGATCCAAT-CAAG--------------------AATGATTTCTCAAAG-----------------CATTACCATTCCTTCCTCTACCTTAG------------------------------------CACACATTTTC i loxAfr3.scaffold_113 I 2556 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691634 78 + 1032594 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=84315.000000 s hg19.chrUn_gl000223 91145 48 + 180455 TGACTTTTGTTCTTCCCCTTGCCATAAGCCAGTGTTGGATCTGGTCTT s panTro2.chr12 215949 48 - 135371336 TGACTTTTATTCTTCCCCTTGCCATAAGCCAGTGTTGGATCTGGTCTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 11 48 - 4218 TGACTTTTGTTCTTCCCCTTGCCATAAGCCAGTGTTGGATCTGGTCTT i gorGor1.Supercontig_0208698 N 0 C 0 s ponAbe2.chr12 255629 45 - 136387465 TGACTT---TTCTTCCCCTTGCCATAAGCCAGTGTTGGATCTGGTCTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 227678 48 - 134511895 TGACATTTGTTCTTCCCCTTGCCATGAGCCAGTGTTGGATCTGGTCTT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 8715 39 + 14835 TGCCTTTTGTTCTTACTCT--------GTCA-TGTTGGATCTGGTCTT i micMur1.scaffold_19586 C 0 C 0 s oryCun2.chrUn0106 691712 45 + 1032594 TGACTT--GTTCTTCCAAA-GCCATGGGCCAGTGTTGGACCTGGTCTT i oryCun2.chrUn0106 I 78 I 1 s loxAfr3.scaffold_113 117994 45 - 3408981 TGGTTTCTGTACTTCC---TGTCACGTGCCAGTGCTTGATCTGGTCTT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 495 45 - 3798 TGGCAT-TGTACTTCT-CATGTCATG-GCCAGTGCTGGATCTGGTATT i choHof1.scaffold_177942 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_73976.1-64926 21247 174 + 64926 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=22162.000000 s hg19.chrUn_gl000223 91193 20 + 180455 GCCTTAGCT-GC----------------TA-----CAGCTAA s panTro2.chr12 215997 20 - 135371336 GCCTTAGCT-GC----------------TA-----CAGCTAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 59 20 - 4218 GCCTTAGCT-GC----------------TA-----CAGCTAA i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 255674 20 - 136387465 GCCTTAGCT-GC----------------TG-----CAGCTAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 227726 20 - 134511895 GCCCTAGCT-GC----------------TG-----CAGCTAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 8754 20 + 14835 GGATTAGCC-AG----------------TC-----TAGCTAA i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_73976.1-64926 21421 41 + 64926 gaatttggc-aaaaatcaatgaaaaaattccgtaataattaa i otoGar1.scaffold_73976.1-64926 I 174 C 0 s oryCun2.chrUn0106 691758 20 + 1032594 GTATTAGCC-AG----------------TG-----CAACTAA i oryCun2.chrUn0106 I 1 C 0 s loxAfr3.scaffold_113 118039 17 - 3408981 GCATTAGCC-AG----------------TG-----AAGC--- i loxAfr3.scaffold_113 C 0 I 3 s choHof1.scaffold_177942 540 21 - 3798 GCATTAGCTGAC----------------TG-----CAGCCAA i choHof1.scaffold_177942 C 0 I 4 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=20501.000000 s hg19.chrUn_gl000223 91213 19 + 180455 CT------------TTTAAAACCATCATCAT s panTro2.chr12 216017 19 - 135371336 CT------------TTTAAAACCATCATCAT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 79 19 - 4218 CT------------TTTAAAACCATCATCAT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 255694 19 - 136387465 CT------------TTTAAAACCATCATCAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 227746 19 - 134511895 CT------------TTTAAAACCATCATCAT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 8774 19 + 14835 CT------------TATAAAATCATAACCAC i micMur1.scaffold_19586 C 0 I 101 s otoGar1.scaffold_73976.1-64926 21462 30 + 64926 ctgtaaaaaatggatattaaattgt-attat i otoGar1.scaffold_73976.1-64926 C 0 I 7 s oryCun2.chrUn0106 691778 13 + 1032594 CT------------TTTAAAAGTAT------ i oryCun2.chrUn0106 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=49003.000000 s hg19.chrUn_gl000223 91232 40 + 180455 ggtcaggcatggtggctcacgcctgtaatcccggcacttc s panTro2.chr12 216036 40 - 135371336 ggtcaggcatggtggctcacgcctgtaatcccggcacttc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 98 40 - 4218 ggtcaggcatggtggctcacgcctgtaatcccggcacttc i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 255713 40 - 136387465 ggtcgggagtggtggctcacgcctgtaatcccagcacttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 227765 23 - 134511895 GGCCAGGTGTGGTGGCTCACGCC----------------- i rheMac2.chr11 C 0 M 397 s micMur1.scaffold_19586 8894 40 + 14835 ggctgggcacggtggctcacgcctgtaatcctagcactct i micMur1.scaffold_19586 I 101 C 0 s otoGar1.scaffold_73976.1-64926 21499 40 + 64926 ggctgggtgcaaaagctcatacctgtaatcccagtgcctt i otoGar1.scaffold_73976.1-64926 I 7 C 0 s oryCun2.chrUn0106 691791 33 + 1032594 -------AATGGGGGCCGCCAcctgcagtgccaacatccc i oryCun2.chrUn0106 C 0 I 1585 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=89661.000000 s hg19.chrUn_gl000223 91272 112 + 180455 gggaggccgaggcaggtggattacctgaggtc-aggaattcaagaccagcctggccaacgtggtgaaaccccgtctctactaaaaat--------------------------------acaaaa-attagccaggcgcggtggca s panTro2.chr12 216076 112 - 135371336 gggaggccaaggcaggtggattacctgaggtc-aggaattcaagaccagcctggccaacgtgatgaaaccccgtctctactaaaaat--------------------------------acaaaa-attagccaggcgcggtggcA i panTro2.chr12 C 0 I 431 s gorGor1.Supercontig_0208698 138 112 - 4218 gggaggccgaggcaggtggattacctgaggtc-aggaattcaagaccagcctggccaacgtggtgaaaccccgtctctactaaaaat--------------------------------acaaaa-attagccaggcacggtggca i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 255753 112 - 136387465 gggaggtcgaggcaggtggattacctgaggtc-aggaattcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaat--------------------------------acaaaa-attagccaggcgtagtggca i ponAbe2.chr12 C 0 C 0 s micMur1.scaffold_19586 8934 143 + 14835 gggaggccgaggcgggcggattgctagaggtc-aggagttcgaaaccagcctgagca--agagcgagaccccatctctactataaataggaagaaattaattggccaagtaatacatacagaaaaaattagccgggcatggtggca i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_73976.1-64926 21539 120 + 64926 aggaggtgaaggtagcaggatcatttgaggccaaagatttcaagacaagcttggacaacatactaacacctcatctctgccaataat-gtttgtagacaatgacctaagtgtt------agaaaaca------------------- i otoGar1.scaffold_73976.1-64926 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 227788 397 - 134511895 M e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=113526.000000 s hg19.chrUn_gl000223 91384 172 + 180455 cacacctgtaatcccagctactatggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgcaatt-----cactccagcctgggtgacagaacaagactccgtctcaaaaaaaaaaaaaaacaaaacaaaacaaaaa-aaaaAACAGAAA s ponAbe2.chr12 255865 146 - 136387465 cacacctgtaatcccagctactagggaggctgaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagccaagatcgtgccatt-----cactccagcctgggtgacagaacaagactccatctcaaaaa---------------------------aaaaaaaaaaaa i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 250 162 - 4218 ----cctgtaatcccagctgctatggaggctaaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagatcgtgcaatt-----cactccagcctgggtgacagaacaagactccatctcaaaaaaaaa-------aaaacaaaaaaaacccaaaaaaCAAAAA i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 216619 173 - 135371336 cacacctgtaatcccagctacttaggaggttgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgtccaatt-----cactccaccctgggtgacagaacaagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaacaaaaa i panTro2.chr12 I 431 C 0 s micMur1.scaffold_19586 9077 149 + 14835 catgcctgtagtcccagctactcgggaggctgaggcaggaggattgcttgagcccaggagtttgaggttgctgtgagctaggctgacgccatggcactcactctagccagggcaacagagtgagactctgtctcaaaaaaaaaaaaaaa----------------------------- i micMur1.scaffold_19586 C 0 I 120 s otoGar1.scaffold_73976.1-64926 21659 161 + 64926 ------------cttagctgtttcccaggctgaggcaggagaatcatttgaggccaggagttcaagtttttagttatatataatgacaccactg----ccttccagcctggaaaacacagtgagaccttgtctctaaaaTCAATCAATCTATAATTATTTAATTC-AAGAAACAAAAG i otoGar1.scaffold_73976.1-64926 C 0 I 46 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 227788 397 - 134511895 M e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=60790.000000 s hg19.chrUn_gl000223 91556 110 + 180455 GCAAAACCATCATCACTGCTGGGTGTCAGTGCACCAAGTATATGCTGTAAGTAATTGCCCTTCACTGAACACCCTCAAAGGATTTCACAAGTATCTACCCCCTCCCCCAA s panTro2.chr12 216792 110 - 135371336 GCAAAACCATCATCATTGCTGGGTGTCAGTGCACCAAGTATATGCTGTAAGTAATTGCCCTTCACTGAACACCCTCAAAGGATTTCACAAGTATTTACCCCCTCCCCCAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 412 110 - 4218 GCAAAACCATCATCATTGCTGGGTGTCAGTGCACCAAGTATATGCTGTAAGTAATTGCCCTTCACTGAACACCCTCAAAGGATTTCACAAGTATTTACCCCCTCCCCCAA i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256011 110 - 136387465 gcaaaaCCATCATCACTGTTGGGTGTCAGTGCACCAAGTATATGCTGTAAGTAACTGCCCTTCACTGAACACCCTCAAAGGATTTCACAAGTATTTACCCCCTCCCCCAG i ponAbe2.chr12 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9226 120 + 14835 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_73976.1-64926 21820 46 + 64926 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 227788 397 - 134511895 M e cavPor3.scaffold_248 231148 43780 + 667635 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=53161.000000 s hg19.chrUn_gl000223 91666 77 + 180455 Ctttttttttgagacagggtctcactgtt--gcccagactggagtacagtg------cagctcac--tgcatccttgacc--tcctggg s otoGar1.scaffold_73976.1-64926 21866 79 + 64926 ctttgttttggagtc----tcactctgtg--accctgagtacagtaccttggtatcatagctccc--tgcaacctccaac--tcctggt i otoGar1.scaffold_73976.1-64926 I 46 C 0 s panTro2.chr12 216902 77 - 135371336 Ctttttttttgagacagggtctcactgtt--gcccagactggagtacagtg------cagctcac--tgcatccttgacc--tcctggg i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 522 77 - 4218 Ctttttttttgagacagggtgtcactgtt--gcccagactggagtncagtg------cagctcac--ngcatccttgacc--tcctggg i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256121 77 - 136387465 Ctttttttttgggacagggtctcactgtt--gcccaggctggagtacagtg------cagctcac--tgcatccttgacc--tcctggg i ponAbe2.chr12 C 0 C 0 s cavPor3.scaffold_248 416989 75 - 667635 ---tctttttgagacagggtctcgctatgcagttcagactgg----ccttg-------agctcactttgtagcccaggctggtcttgaa i cavPor3.scaffold_248 I 85902 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9226 120 + 14835 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 227788 397 - 134511895 M e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=129610.000000 s hg19.chrUn_gl000223 91743 133 + 180455 ctc-aagtgatcctcctgcctcaacctcctgagtagctgggattgcaggtgtgcaccgctg-----------taaccagctt----------ttaaga-----aactttt------------gt---agacagggttttgtca----cgttgccctggg------------------tgTTGTCAT----GCTGAGAAGTT s panTro2.chr12 216979 133 - 135371336 ctc-aagtgatcctcctgcctcaacctcctgagtagctgggattgcaggtgtgcaccgctg-----------taaccagctt----------ttaaga-----aactttt------------gt---agacagggttttgtca----cgttgccctggG------------------TTTTGTCAT----GCTGAGAAGTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 599 133 - 4218 ctc-aagtgatcctcctgcctcaacctcctgagtagctgggattgcaggcgtgcactgctg-----------taaccagctt----------ttaaga-----aactttt------------gt---agacagggttttgtca----cgttgccctggG------------------TTTTGTCAT----GCTGAGAAGTT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256198 133 - 136387465 ctc-aagcaatcctcctgcctcaaccaactgagtagctgggattgcaggtgtgcaccactg-----------tacccagctt----------ttaaaa-----aatttgt------------gt---agacagggttttgtca----cgttgccctggG------------------TTTTGTCAT----GCTGAGAAGTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 228185 133 - 134511895 ctc-aagcaatcctcctgcctcaacctcctgaggagccgggattgcaggtgtgcaccactg-----------tacccagctt----------ttaaaa-----aactttt------------gt---agacagggttttgtca----cgttgccTTGGG------------------TTTTGTCAT----GTTGAGAAGTT i rheMac2.chr11 M 397 C 0 s otoGar1.scaffold_73976.1-64926 21945 137 + 64926 ctt-gtacaatcctcttgccttagcctcct-agtagctgtgcctaccagtg----ccactgaacatgatacctgcctagctt----------ttctg--------ctttt------------acaagagacatggtctggctc------ttgctctggc------------------tattcttta----actcaagagct i otoGar1.scaffold_73976.1-64926 C 0 n 0 s cavPor3.scaffold_248 417064 186 - 667635 ctcgaaacgatcctcctgcctcagcctcccgagt-gccgggattacaggcatgagccacca-----------cgcccggctTGCTGCTAGACTTTAAACTCATAACTTTTCCTGGGTACTACAT---AGACAGTGACTCGTAAGTATTCATGCCCTTGAATGAATACTCAAAAAAATTCTTTTTATATGGACTTACCAGTT i cavPor3.scaffold_248 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9226 120 + 14835 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=83636.000000 s hg19.chrUn_gl000223 91876 77 + 180455 TTGATACATTACTC--ATTCCTGCAATGCTCTATGAATTCTACATATTTTCCTAAATGAGCAATCCCATCCCAGGGCAT s rheMac2.chr11 228318 76 - 134511895 TGGATATATTACTC--ATTCCTGCAATGCTCTATGAATTCTACCTA-TTCCCTAAATGAGCAATCCCATCCCAGGGCAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 256331 77 - 136387465 TTGATATATTACTC--ATTCCTGCAATGCTCTATGAATTCTACATATTTTCCTAAATGAGCAGTCCCATCCCAGGGCAT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 732 77 - 4218 TTGATATATTACTC--ATTCCTGCAATGCTCTATGAATTCTACATATTTTCCTAAATGAGCAATCCCATCCCAGGGCAT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 217112 77 - 135371336 TTGATATATTACTC--ATTCCTGCAATGCTCTATGAATTCTACATATTTTCCTAAATGAGCAATCCCATCCCAGGGCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 417250 79 - 667635 TTGGTGTATTTTTTTAATTCCTGCAATGTGCTGTGATTTCTGTATTTTAGTATAAATCAACAACCCCATCCCTGGGCAT i cavPor3.scaffold_248 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9226 120 + 14835 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_73976.1-64926 22082 0 + 64926 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e bosTau4.chr17 29978288 11897 - 76506943 I e equCab2.chr8 64161609 3103 - 94057673 I e canFam2.chr26 3207184 3235 + 42029645 I a score=261748.000000 s hg19.chrUn_gl000223 91953 149 + 180455 GTTTAGTGTAGATTATTGTTACCAAACTGGT--AAAAATAAGCCATGGGGAACTGGCAGAATAAGCTTCCTCCTGCAAGGCA------AAT---TCCACATTTTCCCAGAAAAGGGAAGGGGTTCTATCTGTATCAGGAGGTGGCAGGTTTTTT----------ATACCT---- s cavPor3.scaffold_248 417329 157 - 667635 TTTTAGTGTGGG---CTGTGATATAAATGATACATGAGTGAGGTATATGGTCCAGGTAGATGCAGATT--TCCTACAAGGAAGGAGATGAA---GTCATCTTTTCTCAGAAAAGCTAGGGATTGTT-----CATCAGGAGTTGGCaggttttccaggcagcatggtaact---- i cavPor3.scaffold_248 C 0 I 4 s micMur1.scaffold_19586 9346 155 + 14835 GTTTAATGTAGATTACTCTCACCAAACTGGT--AACACTGAGCCATGGGGAATTGGCAGAATAAGCTTCACCCTACAAGGCA------AAG---TCCAC-TTTTTTCAGAAAAAGGAAGGAGCTCTCTCCACATCAGGAGtt---agattctgtgggcaatgcgatgtct---- i micMur1.scaffold_19586 I 120 I 2 s rheMac2.chr11 228394 147 - 134511895 GTTCAGTGTAGATTCTTGTTACCAAACTGGT--AAAAATAAGCCATGGGGAATTGGTAGAATAAGTTTCCTCCTGCAAGGCA------AAT---TCCACATTTTCCCAGAAAAGGGAAGGGGTTCTATTTATATCAGGAGGTGGCAGGTtttt------------tacct---- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 256408 149 - 136387465 GTTTAGTGTAGATTATTGTTACCAAACTGGT--AAAAATAAGCCATGGGGAACTGGCAGAATAAGCTTCCTCCTGCAAGGCA------AAT---TCCACATTTTCCCAGAAAAGGGAAGGGGTTCTATCTTTATCAGGAGGTGGCAGGTTTTTT----------ATACCT---- i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 809 151 - 4218 GTTTAGTGTAGATTATTGTTACCAAACTGGTAAAAAAATAAGCCATGGGGAACTGGCAGAATAAGCTTCCTCCTGCAAGGCA------AAT---TCCACATTTTCCCAGAAAAGGGAAGGGGTTCTATCTGTATCAGGAGGTGGCAGGTTTTTT----------ATACCT---- i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 217189 149 - 135371336 GTTTAGTGTAGATTATTGTTACCAAACTGGT--AAAAATAAGCCATGGGGAACTGGCAGAATAAGCTTCCTCCTGCAAGGCA------AAT---TCCACATTTTCCCAGAAAAGGGAAGGGGTTCTATCTGTATCAGGAGGTGGCAGGTTTTTT----------ATACCT---- i panTro2.chr12 C 0 C 0 s bosTau4.chr17 29990185 129 - 76506943 ------------------------agCTGGT--AAC--TGAGACATGGGGTACTGGCAGAATAAGCTTCCTCCTACAAGCAA------TGA---TCCAC--TTTTTCAGGGAAGG-AAGGGCCTCTA----CATCAGGAGTTAGCaggttctg-gggtaacactgtatctgcca i bosTau4.chr17 I 11897 C 0 s equCab2.chr8 64164712 119 - 94057673 ------------------------aGCTGGT--GACAATGAGGCATGGGGTATAGGTAGAATAAGCTTCCTCCTG-----------------------C--TGTCTCAGAGAAGGGAAGGGGCCCTA----CCTCAGGAGTCGGCaggttttgtgggtaatacagtgtctgcca i equCab2.chr8 I 3103 C 0 s felCat3.scaffold_141205 497 138 - 2858 --------------------acagaACTGGT--AGTATTGAGCCCTGGGGTATTGGCAGAATAAACCTGCTCTTGCAAGGTT------TTGTCTTCCAC--TTTTTCAGGGAGGGAAAGGGGCCCTA----CATCAGGAGTTGGCaggtttcctgggc--tacagtatctgtca i felCat3.scaffold_141205 N 0 C 0 s canFam2.chr26 3210419 134 + 42029645 --------------------acagaGTTGGT--AGTAATGAGCCCCGAGGTGTTGGCAGAATGAGCTGCCTCCTGTAAGGCG------TGG---TCCAC--TTTTTCAGAGAGGGTAAGGGGCTCCA----CATTAGGGTGTGGCACATTTCCTGGGC--AACAGCAG-GACCA i canFam2.chr26 I 3235 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_73976.1-64926 22082 0 + 64926 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I a score=165868.000000 s hg19.chrUn_gl000223 92102 72 + 180455 caactactcaactgtgccatgg----ctgtgcaaaagcagtcaaataatacacaaat----atatt-tagccatgttccaa s panTro2.chr12 217338 72 - 135371336 caactactcaactgtgccatgg----ctgtgcaaaagcagtcaaataatacacaaat----atatt-tagccatgttccaa i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 960 72 - 4218 caactactcaactgtgccatgg----ctgtgcaaaagcagtcaaataatacacaaat----atatt-tagccatgttccaa i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256557 72 - 136387465 caactactcaactgtgtaatgg----ctgtgcaaaagcagtcaaataatacacaaat----atatt-tagccatgttccaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 228541 72 - 134511895 cagctactcaactgtgccattg----ctgtgcaaaagcagtcaaataatacacaaat----atatt-tagccatgttctaa i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 9503 72 + 14835 cacattttcaactctgccacta----cagtgcaaaagcagtcagataatacacaaac----atatc-tggccatgttccaa i micMur1.scaffold_19586 I 2 C 0 s otoGar1.scaffold_78004.1-39946 10437 67 - 39946 caaatattcaactctgccattg----cagtgcacag-----catcaaatacacaaat----acatt-cagatatgttccaa i otoGar1.scaffold_78004.1-39946 n 0 C 0 s cavPor3.scaffold_248 417490 68 - 667635 aaactactagactctgctactg----aaatgcaagg-----cagATAATGCAGACAT----ACTTTGCAGTACTGCTCCAA i cavPor3.scaffold_248 I 4 I 284 s canFam2.chr26 3210553 65 + 42029645 caac--------tctgtcattgtagttagtgcaaaagccactagacaatacaca-------atgtc-cccctatgttccaa i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141205 635 72 - 2858 cagc--------tctgccattgtagttagtgcaaaagccgccagacaacacacaaacgattaggcc-tggcagtgttccaa i felCat3.scaffold_141205 C 0 C 0 s equCab2.chr8 64164831 75 - 94057673 caacaattcaatgctgcca----ggacagtgcaaaagcagccacacaacacagaaatgat-gcatc-gggctatgtcccag i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29990314 69 - 76506943 caaccactcaactctaccactg----tagtgtataagcaatt------tacagccaggtt-atggc-tggctgtgttccaa i bosTau4.chr17 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I a score=68926.000000 s hg19.chrUn_gl000223 92174 45 + 180455 caacagtt-atttatggacactcaagtttgaattt-----------t------atataTTGCC s panTro2.chr12 217410 45 - 135371336 caacagtt-atttatggacactcaagtttgaattt-----------t------atataTTGCC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1032 45 - 4218 caacagtt-atttatggacactcaagtttgaattt-----------t------atataTTGCC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256629 45 - 136387465 caacagtt-atttatggacactcaagtttgaattt-----------t------atataTTGCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 228613 45 - 134511895 caacagtt-atttatggacactcaagtttgaattt-----------t------atataTTGCC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 9575 39 + 14835 gaaaaa-------gttgacactcaagtttgaattt-----------c------atataTTGCC i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10504 44 - 39946 gaaaaa--------ctgacactcaagcttgaattt-----------catatTAATATACTGCC i otoGar1.scaffold_78004.1-39946 C 0 C 0 s canFam2.chr26 3210618 36 + 42029645 taaaacttgattggcggatgctaaaatttgaagtt-----------c---------------- i canFam2.chr26 C 0 I 1 s felCat3.scaffold_141205 707 36 - 2858 caaaacttgatttatggatgctgaaatttgaattt-----------c---------------- i felCat3.scaffold_141205 C 0 I 1 s equCab2.chr8 64164906 36 - 94057673 taaaacttgatttatgggcactgaaatttgcattt-----------c---------------- i equCab2.chr8 C 0 I 1 s bosTau4.chr17 29990383 47 - 76506943 tgaaactcgagtgatggacactgaaattttaattaaataattttgtc---------------- i bosTau4.chr17 C 0 I 110 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e cavPor3.scaffold_248 417558 284 - 667635 I a score=-2708.000000 s hg19.chrUn_gl000223 92219 9 + 180455 -------AACATCTAC s panTro2.chr12 217455 9 - 135371336 -------AACATCTAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1077 9 - 4218 -------AACATCTAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256674 9 - 136387465 -------AACATCTAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 228658 9 - 134511895 -------AACATCTAG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 9614 9 + 14835 -------AATATCTAG i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10548 9 - 39946 -------AACACTTAG i otoGar1.scaffold_78004.1-39946 C 0 C 0 s bosTau4.chr17 29990540 9 - 76506943 aacttctAA------- i bosTau4.chr17 I 110 C 0 s canFam2.chr26 3210655 2 + 42029645 -------aa------- i canFam2.chr26 I 1 I 601 s felCat3.scaffold_141205 744 2 - 2858 -------aa------- i felCat3.scaffold_141205 I 1 I 210 s equCab2.chr8 64164943 2 - 94057673 -------aa------- i equCab2.chr8 I 1 I 171 s myoLuc1.scaffold_130229 6884 2 - 12560 -------AA------- i myoLuc1.scaffold_130229 N 0 I 7 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e cavPor3.scaffold_248 417558 284 - 667635 I a score=66552.000000 s hg19.chrUn_gl000223 92228 49 + 180455 TCTATAGCCTTAAATGAAGCATCTGCAGTGCAAAGTCTATCAGAAGAGT s panTro2.chr12 217464 49 - 135371336 TCTATAGCCATAAATGAAGCATCTGCAGTGCAAAGTCTATCAGAAGAGT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1086 49 - 4218 TCTATAGCCTTAAATGAAGCATCTGCAGTGCAAAGTCTATCAGAAGAGT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256683 49 - 136387465 TCTATAGCCTTAAATGAAGCACCTGCAGTGCAAAGCCTATCAGAAGAGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 228667 49 - 134511895 TCTATATCCTTAAATGAAGCACCTGCAGTGCAAAGTACATGAGAAGAGT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 9623 30 + 14835 TCTATATCCTTAAATGAAG----TACAGCGCAAA--------------- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10557 48 - 39946 TCTATATCCTTAAATGAAGAACAGACAGTGCAAAGTATATCATAAGAA- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s bosTau4.chr17 29990549 42 - 76506943 GCTGTATCCCTGAGTGACAAGCATGCAA-----AGTGTATC--ATGAGT i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_141205 956 31 - 2858 TCTAGAGCCTCTAGTGA--CATCTGCCG----------------AGAGT i felCat3.scaffold_141205 I 210 C 0 s myoLuc1.scaffold_130229 6893 33 - 12560 TCTATGTCCCTGAATGAAGAGTATACAGTGCAA---------------- i myoLuc1.scaffold_130229 I 7 I 1 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e cavPor3.scaffold_248 417558 284 - 667635 I e equCab2.chr8 64164945 171 - 94057673 I e canFam2.chr26 3210657 601 + 42029645 I a score=55774.000000 s hg19.chrUn_gl000223 92277 88 + 180455 TTGCTAGGCTGAGTCCTCAGGTTCTTCCCAGATACTCCTATTCAAAGTCTATCAGAAGA----GTTTGCTAGGCTGAGTCCTCAGGTTCTTC s panTro2.chr12 217513 88 - 135371336 TTGCTAGGCTGAGTCCTCAGGTTCTTCCCAGATACTCCTATTCAAAGTCTATCAGAAGA----GTTTGCTAGGCTGAGTCCTCAGGTTCTTC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1135 87 - 4218 TTGCTAGGCTGAGTCCTCAGGTTCTTCCCAGATACTCCTATTCAAAGTCTATCAGAANA----GTTTGCTAGGCTGAGTCCTCAGGTTCTT- i gorGor1.Supercontig_0208698 C 0 I 1 s ponAbe2.chr12 256732 88 - 136387465 TTGCTAGGCTGAGTCCTCAGGTTCTTCCCAGATAATCCTATTCAAAGTCTATCAGAAGA----GTTTGCTAGGCTGAGTCCTCAGGTTCTTA i ponAbe2.chr12 C 0 C 0 s bosTau4.chr17 29990591 52 - 76506943 TTGCTAGGTTGAGTCCTCAGATTCTTCACAGGATCCTCTACTCAAATGATCG---------------------------------------- i bosTau4.chr17 C 0 T 56 s felCat3.scaffold_141205 987 76 - 2858 TTGCTAGGCCGAGTCCTCAGGCTCCTGTCAGCTATCAATACACGAAATC-ATCAAGAGACAACTTTTTCTAGACCAA--------------- i felCat3.scaffold_141205 C 0 I 1013 e dasNov2.scaffold_7587 74453 3546 + 154172 I e myoLuc1.scaffold_130229 6926 1 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9653 0 + 14835 C e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_78004.1-39946 10605 0 - 39946 C e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 228716 0 - 134511895 C e cavPor3.scaffold_248 417558 284 - 667635 I e equCab2.chr8 64164945 171 - 94057673 I e canFam2.chr26 3210657 601 + 42029645 I a score=30511.000000 s hg19.chrUn_gl000223 92365 52 + 180455 CCAGACATTCCTATTCAAAGTCTATCAGAAGAGTTTGCTAGGCTGAGTCCTC s panTro2.chr12 217601 52 - 135371336 CCAGACATTCCTATTCAAAGTCTATCAGAAGAGTTTGCTAGGCTGAGGCCTC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1223 52 - 4218 CCAGATATTCCTATTCAAAGTCTGTCAGAAGAGTTTGCTCGGCTGAGTCCTC i gorGor1.Supercontig_0208698 I 1 C 0 s ponAbe2.chr12 256820 52 - 136387465 CCAGATATTCCTATTCAAAGTCTATCAGAAGACTTTGCTAGGCTGAGTCCTC i ponAbe2.chr12 C 0 C 0 s bosTau4.chr17 29990587 22 - 76506943 ------------------------------GAGTTTGCTAGGTTGAGTCCTC i bosTau4.chr17 T 56 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e myoLuc1.scaffold_130229 6926 1 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9653 0 + 14835 C e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_78004.1-39946 10605 0 - 39946 C e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 228716 0 - 134511895 C e cavPor3.scaffold_248 417558 284 - 667635 I e equCab2.chr8 64164945 171 - 94057673 I e canFam2.chr26 3210657 601 + 42029645 I a score=26899.000000 s hg19.chrUn_gl000223 92417 41 + 180455 AGGTTCTTCCCAGATACTCCT---ATTCAAA-----GTCTATCAGAAGA s panTro2.chr12 217653 41 - 135371336 AGGTTCTTCCCAGACATTCCT---ATTCAAA-----GTCTATCAGAAGA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1275 41 - 4218 AGGTTCTTCCCAGACATTCCT---ATTCAAA-----GTCTATCAGAAGA i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256872 41 - 136387465 AGGTTCTTCCCAGATACTCCT---ATTCAAT-----GTCTATCAGAAGA i ponAbe2.chr12 C 0 C 0 s cavPor3.scaffold_248 417842 37 - 667635 AATTTCTTCCTTTAAATTCCTCGAATTCAAC-----ACATAT------- i cavPor3.scaffold_248 I 284 C 0 s bosTau4.chr17 29990609 46 - 76506943 AGATTCTTCACAGGATCCTCT---ACTCAAATGATCGATTATCAAGAGA i bosTau4.chr17 C 0 T 68 e dasNov2.scaffold_7587 74453 3546 + 154172 I e myoLuc1.scaffold_130229 6926 1 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9653 0 + 14835 C e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_78004.1-39946 10605 0 - 39946 C e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 228716 0 - 134511895 C e equCab2.chr8 64164945 171 - 94057673 I e canFam2.chr26 3210657 601 + 42029645 I a score=19587.000000 s hg19.chrUn_gl000223 92458 39 + 180455 GTTTGCTAGGCTGAGTCCT--CAGGTTC--TTCCCAGACATTC---- s panTro2.chr12 217694 39 - 135371336 GTTTGCTAGGCTGAGTCCT--CAGGTTC--TTTCCAGATACTC---- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1316 39 - 4218 GTTTGCTAGGCTGAGGCCT--CAGGTTC--TTCCCAGACATTC---- i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256913 39 - 136387465 GTTTGCTAGGCTGAGTCCT--CAGGTTC--TTCCCAGATACTC---- i ponAbe2.chr12 C 0 C 0 s cavPor3.scaffold_248 417879 41 - 667635 ------TTGGCTGTGTCCTAACAAGTCTGATTTACAGACACAAACTG i cavPor3.scaffold_248 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e myoLuc1.scaffold_130229 6926 1 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 9653 0 + 14835 C e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_78004.1-39946 10605 0 - 39946 C e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 228716 0 - 134511895 C e bosTau4.chr17 29990655 68 - 76506943 T e equCab2.chr8 64164945 171 - 94057673 I e canFam2.chr26 3210657 601 + 42029645 I a score=28502.000000 s hg19.chrUn_gl000223 92497 70 + 180455 CTA--TTCAAAGTCTATCA-GAAGAGTTTGCTAGGCTGAGGCCTCAGGTTCTTCGCAGATACTGCTATTCAAA s cavPor3.scaffold_248 417920 53 - 667635 --AGTTTCAAATGCCAGCATCTAGTGTATACCAAGTGAAGAACAAA------------------CAGCTCAAA i cavPor3.scaffold_248 C 0 C 0 s micMur1.scaffold_19586 9653 21 + 14835 CTA-----------TGTCA-GAAGAG-TTGCTAG--------------------------------------- i micMur1.scaffold_19586 C 0 C 0 s panTro2.chr12 217733 70 - 135371336 CTA--TTCAAAGTCTATCA-GAAGAGTTTGCTAGGCTGAGGCCTCAGGTTCTTTGCAGATACTGCTATTCAAA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1355 70 - 4218 CTA--TTCAAAGTCTATCA-GAAGAGTTTGCTAGGCTGAGTCCTCAGGTTCTTCCCAGACATTCCTATTCAAA i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 256952 70 - 136387465 CTA--TTCAAAGTCTATCA-CAAGAGTTTGCTGGGCTGAGTCCTCAGGTTCTTCCCAGATACTCCTATTCAAA i ponAbe2.chr12 C 0 C 0 s bosTau4.chr17 29990587 50 - 76506943 -----------------------GAGTTTGCTAGGTTGAGTCCTCAGATTCTTCACAGGATCCTCTACTCAAA i bosTau4.chr17 T 68 T 50 e dasNov2.scaffold_7587 74453 3546 + 154172 I e myoLuc1.scaffold_130229 6926 1 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 691824 1585 + 1032594 I e otoGar1.scaffold_78004.1-39946 10605 0 - 39946 C e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I e rheMac2.chr11 228716 0 - 134511895 C e equCab2.chr8 64164945 171 - 94057673 I e canFam2.chr26 3210657 601 + 42029645 I a score=104280.000000 s hg19.chrUn_gl000223 92567 60 + 180455 GTCTATCACAAGAGCTTGCT--AGGCTGAGTCCTCAGGTTCTTCCCAGATATTCCTATTCAA s ponAbe2.chr12 257022 60 - 136387465 GTCTATCAGAAGAGTTTGCT--AGGCTGAGGCCTCAGGTTCTTCCCAGATACTGCTATTCAA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1425 51 - 4218 GTCTATCAGAAGAGTTTGCT--AGGCTGAGTCCTCAGGTTCTTCCCAGACATT--------- i gorGor1.Supercontig_0208698 C 0 I 17 s panTro2.chr12 217803 60 - 135371336 GTCTATCACAAGAGCTTGCT--AGGCTGAGTCCTCAGGTTCTTCCCAGATATTCCTATTCAA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 417973 41 - 667635 GTATATC-------------------TGAGTCCTTAAGTTTCTTCCAG--ATTCCTCTTCAA i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64165116 58 - 94057673 ATGTATCA--GGAGTTTGCC--AGGCTGAGTTCTCCGATACCTCTCAGATATCTCTACTTGA i equCab2.chr8 I 171 C 0 s bosTau4.chr17 29990587 49 - 76506943 -----------GAGTTTGCT--AGGTTGAGTCCTCAGATTCTTCACAGGATCCTCTACTCAA i bosTau4.chr17 T 50 I 7 s myoLuc1.scaffold_130229 6927 49 - 12560 -----TTATCAGAGCTTGCT--AGGCT--GTTCT--GATTCC--TCAAATATCTCTACTCGA i myoLuc1.scaffold_130229 I 1 C 0 s canFam2.chr26 3211258 50 + 42029645 --------CAGGTGTCTGCC--CAGTTGAGTTCG--GACTTCTGTCAGATCTCCCCACATGA i canFam2.chr26 I 601 C 0 s rheMac2.chr11 228716 45 - 134511895 ---------------TTGCT--AGGCCGAGTCCTCAGGTTCTTCCCAGATATTCCTATTCAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 9674 40 + 14835 ----------------------AGGCTGAGACCTAAGGTTCCTCCTAGATAGTCCTATTCAA i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10605 47 - 39946 ---------------TTGCTACAGGCTGAGGCCTCAGGTTCCTCCTAGATATTCCTGTTCAT i otoGar1.scaffold_78004.1-39946 C 0 C 0 s oryCun2.chrUn0106 693409 56 + 1032594 --ATACCAAAAGG--CTGCT--AGATTGAATAGTCACATTCCTCTTGGATATTCTTATTCAA i oryCun2.chrUn0106 I 1585 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I a score=1522.000000 s hg19.chrUn_gl000223 92627 38 + 180455 ATTATCAAGGGATAACTTTTTGA-GGGGGGGAAGGGTGA s ponAbe2.chr12 257082 38 - 136387465 ATTATCAAGGGATAACTTTTTTT-TGGGGGGAAGGGTGA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 217863 39 - 135371336 ATTATCAAGGGATAACTTTTTTTTGGGGGGGAAGGTTGA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 418014 18 - 667635 ATTATCAAGGGAAAACTT--------------------- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 693465 9 + 1032594 ATTATCAAG------------------------------ i oryCun2.chrUn0106 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10652 9 - 39946 ATTATCAAG------------------------------ i otoGar1.scaffold_78004.1-39946 C 0 C 0 s micMur1.scaffold_19586 9714 9 + 14835 ATTATCAAG------------------------------ i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 228761 21 - 134511895 ATTATCAAGGGATAACTTTTT------------------ i rheMac2.chr11 C 0 I 340 s bosTau4.chr17 29990643 20 - 76506943 ATTATCAAGAGA-CACTTTTT------------------ i bosTau4.chr17 I 7 C 0 s equCab2.chr8 64165174 16 - 94057673 ATTATTGAGAGA-----TTTT------------------ i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_130229 6976 15 - 12560 ATTATC---AGA---CTTTTT------------------ i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3211308 21 + 42029645 ACTGTCAACAAACTACTTTTT------------------ i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I a score=286548.000000 s hg19.chrUn_gl000223 92665 201 + 180455 GGATAACTTTTTCAACACATGTTTACATTAAGGGATTTAGTAAACATTTGAGGTGA--ACTGA-------------------CTTT--AATTCACCAAGCC----------AAATATACTATTTGATTCCCACCACCTCACTCCTACAGCTG-TAAG----AAACTTTTTCAGCAATGTCA----AAGTT--GCCAAGTCTGACACTCCACCCTGAGGTGAGATTTCAGGGCTTCAGGCCT--GTCA s panTro2.chr12 217902 201 - 135371336 GGATAACTTTTTCAATGCATGTTTACATTAAGGGATTTAGTAAACATTTGAGGTGA--ACTGA-------------------CTTT--AATTCACCAAGCC----------AAATATACTATTTGATTCCCACCACCTCACTCCTACAGCTG-TAAG----AAACTTTTTCAGCAATGTCA----AAGTT--GCCAAGTCTGACACTCCACCCTGAGGTGAGATTTCAGGGCTTCAGGCCT--GTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257120 197 - 136387465 GGATAACTTTTTCAATGCATGTTTACATTAAGGGATTTAGTAAACATTTGAGGTGA--ACTGA-------------------CTTT--AATTCACCAAGCC----------AAATATAC----TGATTCCCACCACCTCACTCCTACAGCTG-TAAG----AAACTTTTTCAGCAATGTCA----AAGTT--GCCAAGTCCAACACTCGACCCTGAGGTGAGATTTCAGGGCTTCAGGCCT--GTCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229122 201 - 134511895 GGATAACTTTTTCAATGCATGTTTACATTAAGGGATTTAGTAAACATTTGAGGTGA--ACTGA-------------------CTTT--AATTCACCAAGCC----------AAATATACTATTTGATTCCCACCATCTCACTCCCACAGCTG-TAAG----AAACTTTTACAGCAATGTCA----AAATT--GCTGAGTCTGACACTCCAACCTGAGACGAGATTTCAGGGCTTCAGGCCT--GGCA i rheMac2.chr11 I 340 C 0 s micMur1.scaffold_19586 9723 212 + 14835 GGACAACTTTTTCAATGCATATTTACA-TAAGGGATTTAGTGAGCAGTTGAGGTGTGGACTAA-------------------CTTTTAAATTCACAAAGCC----------AAACATACTATTTGGTTTCCAGCATATCGACCCTATGAATA-TAAGTGAAAAGTTATTTCAGCAAAATCACAATAAGCT--GTTGAGTCTGATACTCCACCCTGAGAAGAAATTCCAGGGCTTCACACCT--GCCA i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10661 210 - 39946 GGGTAACTTTTTCAATGCACGTTTACG-TAAGAAATTTAGTAAGCATTTGAGGTGC--ACTGA-------------------CTCTTTAATTCACCATGTC----------ATATATACTATTTGGCTTCTAATATCTCAACCCTGTGACTA-TAAGTGAAATGTTACTTCAGCAACATCACAGAAAGCT--GGTGAGTCTGATAATCCACCTTGAGATCAAATTTGAGGACTTCACACCT--ATCA i otoGar1.scaffold_78004.1-39946 C 0 C 0 s cavPor3.scaffold_248 418032 165 - 667635 -------------------------------AGGTTTGAGTGAGCA-TTGAGATGG--ACTGAATTTATTTTCTGGATTAACTTTTC-AATTCGGCAAGCC----------AGACATACTATTTGATGC---------CTACCCTATAGATG-AAAG--------TATTTCAGCAGAGCCACAG-GAATT--------GCTGA--------ATTGAGGGCGGCTGTAAGGACTTCATGCCT--GTTA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 693474 175 + 1032594 --------------------------------GATTTAGGTGAGCATTTGAGATGA--CTTGA-------------------CTCTT-AATTCATCAAGCC----------AAATACACTGTTTGATTC-TACCACCTCAATCCTACAGTTG-ACAA---GTATTTATTTTAGCAATATGACAA-GCATTTATTTTAGACTGATACTCAGCCTTGAGATAAGATTTCAGGGCTCCACGCCT--GTCT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29990663 182 - 76506943 ------CTA-------ACATGTATACA-TAAGGGA-TTGGT--GCACTTAAGGTAG--ATGAC-------------------TCTGT-ACCTCAGCAA---------------CTGTG-TCTTTGATTTCCATCATCTCAACCCTACAACTCTTGAGTAAGCAATTATTTCCACAATGTCAGA--GAACT--GCTGA---CAACACTCTGCGCTGAGATGAGATTT-AGGCCTTCAAGTCT--GGCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64165190 182 - 94057673 ------CTAAACCAAAGCATGTTTACA-TAAGGGA--TAGTGAGCATTCGAAGTGG--ACGAC-------------------TTTTT-AATTTGGCAAGCC----------ATATATG-TATTTGATTTCCACCATCTCAACCCTGCAGCTA-TGAGTGAGCAATTATTTCAGCAATGTTT--------------------AATACTCTGCCTTGAGATGAGATCTCAGGGCTTCAAGTCT--GTCA i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_130229 6991 196 - 12560 ------CTAGACCAATGCATGTTCACA-TAAGGGA-TTAATGAGCATTTGAAATGA--ATGAC------------------TTTTTT-AATTCAGCAAGCCaaatatatatatatata-tatttGCCTTCCACTATCTGAACCCTACAGCTA-TGAGTAAGCAATTATTTCATTAATGTCA--------------------CAAGAGTTGCTTTGAGGTGAGATTTCAGGGCTTCAGGTCTTGGTCA i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3211329 117 + 42029645 ------CTAGATCAATATATGTTCATA-TAAAGGA-TTAGCAAGCATGTGAAGTAG--ATG------------------------TG-AATTTAGCAA-------------------------------------------------------------------TGTCACAG------TT--------------------AATGCTTTTCCTTGGGATGAGATTTCAGAGCCTCACATCT--GTCA i canFam2.chr26 C 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrX 15546751 0 + 15657440 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I a score=133236.000000 s hg19.chrUn_gl000223 92866 58 + 180455 TTCTCATGGTCTAAGATCCAGCAAGATCAAAATCAGCCATCTCTGCCCCTGTCTCAGA s canFam2.chr26 3211446 51 + 42029645 TTGTTG-GGTTTAAGA------GTGAACAGAAGTAGCCATCCCATCTCCTATGTCAGA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7187 54 - 12560 CTGTTT-AATTTAAGAGCT---GATTGCAGAAGTATCCATCTCATCTCCGGTCCCATA i myoLuc1.scaffold_130229 C 0 C 0 s equCab2.chr8 64165372 57 - 94057673 TTGTTG-TGTTTAAGAGCTAATGTGACCAGAAGGAGCCATCTCATTTCCTGTCCCAGA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29990845 54 - 76506943 TTGT----GTTTAAGAGCTGATGGAACCAGAACTAGCCATTTCATCTGATGTTCCAGA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 693649 57 + 1032594 TTTCTGTGGTCTAAGACCTGGTATGAC-CTAAGCAACCATCTCACTTCCTGTCTCAGA i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 418197 58 - 667635 TTCTCGCAGTCTAAGATCTAGAATGATGAAAAGCAACCATCTCATCTCCTGTCCCACA i cavPor3.scaffold_248 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10871 58 - 39946 TTCTTGTGGCCTAAGGTATGGGATGATCAAATTGAGCCACTTCATCTCCTGTCCTGGA i otoGar1.scaffold_78004.1-39946 C 0 C 0 s micMur1.scaffold_19586 9935 58 + 14835 TTCTTGTGGTCTAAGATCTAGTATGATTAAAATTAGTCATCTCATTTCCTGTCCTGGA i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 229323 57 - 134511895 TTCTTATGATCTAAGATCTAGCACGATCAAAATCAGCCATCTCTGTCCC-ATCTCAGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 257317 58 - 136387465 TTCTCATGGTCTAAGATCTAGCAAGATCAAAATCAGCCATCTCTGCCCCTGTCTCAGA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 218103 58 - 135371336 TTCTCATGGTCTAAGATCTAGCAAGATCAAAATCAGCCATCTCTGCCCCTGTCTCAGA i panTro2.chr12 C 0 C 0 s gasAcu1.chrXX 8105729 55 - 19732071 TTCTAGCAATATAGGATGT---CAAATACATGTTATCCTTAGCAGCTCTTGTTCTCAA i gasAcu1.chrXX n 0 C 0 e dasNov2.scaffold_7587 74453 3546 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e loxAfr3.scaffold_113 118056 3 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 561 4 - 3798 I a score=84896.000000 s hg19.chrUn_gl000223 92924 22 + 180455 --TTTTCT-CATAAATTTAAAATTC---- s panTro2.chr12 218161 22 - 135371336 --TTTTCT-CATAAATTTAAAATTC---- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257375 22 - 136387465 --TTTTCT-CATAAATTTAAAATTC---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229380 22 - 134511895 --TTTTCT-CATAAATTTAAAATTC---- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 9993 23 + 14835 --TTTACTAAAAAAATTTAAAATTC---- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10929 22 - 39946 --TTTCCT-CACAAATTTAAAATTC---- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s cavPor3.scaffold_248 418255 16 - 667635 --TTGCCT-GGTACATTTG---------- i cavPor3.scaffold_248 C 0 I 197 s oryCun2.chrUn0106 693706 22 + 1032594 --TTTCTG-CAAAAATTTAAAATTC---- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29990899 22 - 76506943 --TTTCCT-CATAAATTTAAAAGTT---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64165429 22 - 94057673 --TTTCCT-CATAAATTTAAAACTC---- i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_130229 7241 22 - 12560 --TTTCCT-CATAAATTTAAAGTTC---- i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3211497 22 + 42029645 --TTTACT-CATAAATTAAAAACCC---- i canFam2.chr26 C 0 I 211 s loxAfr3.scaffold_113 118059 22 - 3408981 --TTACCT-CATAATCTTAAAGTTA---- i loxAfr3.scaffold_113 I 3 C 0 s choHof1.scaffold_177942 565 18 - 3798 ------CT-CATAAATCTTAACTTA---- i choHof1.scaffold_177942 I 4 C 0 s dasNov2.scaffold_7587 77999 18 + 154172 ------CT-TGTAAATTTTAAATTA---- i dasNov2.scaffold_7587 I 3546 C 0 s gasAcu1.chrXX 8105784 28 - 19732071 GTCTCAGA-CAAATATTTGCAATTAATTC i gasAcu1.chrXX C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I a score=175748.000000 s hg19.chrUn_gl000223 92946 57 + 180455 TTATAATGCTATAATTCTTCAGTGTTTCCAAAATTTCAGTATCAG---------GCACTACAACGT---- s panTro2.chr12 218183 57 - 135371336 TTATAAGGCTATAATTCTTCAGTGTTTCCAAAATCTCAGCATCAG---------GCACTACAACGT---- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257397 57 - 136387465 TTATAAGGCTATAGTTCTTCAGTGTTTCCAAAATCTCAGCATCAG---------GCACTACAACGT---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229402 57 - 134511895 TTAAAAGGCTATAGTTCTTCGGTGTTTCCAAAATTTCAGCATCAG---------GGACTACAACAT---- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10016 56 + 14835 TTATAAAGCCATAGTTCTTCAATG-TTCCACAGTCTTATCATCAG---------GGATTACATATT---- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 10951 53 - 39946 TTATAAAGCCATAGTTCTTTGATG-TTCCAGAATCTT---ATCAG---------GGGCTACAAGGA---- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s oryCun2.chrUn0106 693728 51 + 1032594 TTTTGAAAC---AGTTCCTCAGTATCCCCAAAATTCT---ATGAA---------GGGCCACAAAGT---- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29990921 57 - 76506943 TTCTAGGACAATAGCTCCTGAGTGTTGCCAGAATCTTACCAACAG---------AGTCCATGAGGT---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64165451 57 - 94057673 TTCTATGGTAACAATTCTTCAGTGTTCCCAGAATCTGATCATCAG---------GGGCCACAAGGT---- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3211730 56 + 42029645 TTCCATGGCAGTAG-CCTTTGGTGTTCCCAGAATCTTATCATCAG---------GGGTCACAAGGT---- i canFam2.chr26 I 211 C 0 s myoLuc1.scaffold_130229 7263 54 - 12560 TTCTATGGAAATAGCTCCTCAGAGTTCCCAGAATCTT---ATCAA---------GGGCCACAAACT---- i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118081 61 - 3408981 TTCCATGGCAGTAGTTCCTCAGTTTTCCCAGAATCTTATCATCAA-----GGCTGGGCCACAAGAG---- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 583 57 - 3798 CTCCATGGCAGTAGTTCCTGAACGCTCCCAGAATCTTACCATCAA---------AGGCCACAAGAG---- i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 78017 57 + 154172 TTCCATGGCAGTAGTTCCTGAGTCCTCCTAGAATCTTACCATCAA---------GGGACATAAGAA---- i dasNov2.scaffold_7587 C 0 C 0 s gasAcu1.chrXX 8105812 59 - 19732071 -----------TTATTCTTTCATAATGTCCTACTTTTAGTGCAGGATAGTGTTAAGACTGTAGAGTGCGT i gasAcu1.chrXX C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e tetNig2.chr21 2560605 10 - 5834722 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 418271 197 - 667635 I a score=81585.000000 s hg19.chrUn_gl000223 93003 37 + 180455 TCCAG--GTGTACA-GAAA----C------AATAACCATATTTCACATGA---- s panTro2.chr12 218240 37 - 135371336 TCCAG--GTGTACA-GAAA----C------AATAACACTATTTCACATGA---- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257454 37 - 136387465 TCCAG--GTGTACA-GAAA----C------AATAACACTATTTCACACGA---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229459 37 - 134511895 TCTAG--GTGTACA-GAAA----C------AATAACACTAGTTCACATGA---- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10072 36 + 14835 GCTA---GTGTACA-CAAA----C------AATTACACTATTTCAAATGA---- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11004 41 - 39946 CCCA---GTGTATG-CAAA----CAAAATTAATTACACTATTTCATA-AA---- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s oryCun2.chrUn0106 693779 23 + 1032594 TGTGG--GTAAACA-CAAG----C------AATGAT------------------ i oryCun2.chrUn0106 C 0 I 157 s bosTau4.chr17 29990978 37 - 76506943 TCTTG--GTGTACA-TAAG----C------AACAACACTATTTCATACTA---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64165508 37 - 94057673 TCTTG--GTGTACA-CAGA----C------AATAATGCTATTTCATACTA---- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3211786 37 + 42029645 TCTTG--GTATACA-CAAG----C------AATAATGCTACTTCATACTA---- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7317 37 - 12560 TTTTG--GTGTACG-CAAA----C------AATAACACCATTTCATATTA---- i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118142 37 - 3408981 TCTAG--GTGTTCA-CAAG----C------AATAACATTATCTCATATTA---- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 640 39 - 3798 ACTAGGTGCAAGCA-CAAG----T------AACGACATGATTTCATACCA---- i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 78074 37 + 154172 TCTAG--GCATATA-CAAG----T------AATAACACAATTTCATACTG---- i dasNov2.scaffold_7587 C 0 C 0 s tetNig2.chr8 5997900 36 + 10512681 TCCAG--GCGCTCA-GAAATGACC------AACA--TAGA-------CCAAAAA i tetNig2.chr8 n 10 C 0 s gasAcu1.chrXX 8105871 46 - 19732071 CCCAG--TGGATTATGAAATTGTC------TATAATTATATGTATTGTCAGTGA i gasAcu1.chrXX C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 418271 197 - 667635 I a score=34277.000000 s hg19.chrUn_gl000223 93040 60 + 180455 T-GGCTAAA---AG--TTGCTATCTTCAAATATAAA---------------------------CAAGAATGTGA-------TTTTCTTGTCT--CAGGAAAA s panTro2.chr12 218277 60 - 135371336 T-GGCTAAA---AG--TTGCTATCTTCAAATATAAA---------------------------CAAGAATGCGA-------TTTTCTTGTCT--CAGGAAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257491 58 - 136387465 T-GGCTAAA---AG--TTGCTATTTTCAAATATAAA---------------------------CAAGAATGCAA-------TTTTCTTGTCT--CAGGAA-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229496 61 - 134511895 TGGGCTAAA---AG--TTGCTATCTTCAAATATAAA---------------------------CAAGAATGGGA-------TATTCTTGTCT--CAGGAAAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10108 66 + 14835 TTGGCTAAA---AAAGTTTGTATCTTGGAATATAAA---------------------------TAGGAATCTGAC----TTTTTTCTTGTCT--CAGGAAAA i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11045 52 - 39946 TGAGCTAAA---AAA-TTCATATCTTGGAATATAA--------------------------------------------TTTTTCTTAATCC--TAGGGAAA i otoGar1.scaffold_78004.1-39946 C 0 C 0 s oryCun2.chrUn0106 693959 64 + 1032594 -TGGCTAAA---ATG-CTCCTGTCATGGAACATAAA---------------------------CAAGAATTTGAT----TTTCTTTTTGTTT--CAAGAAAA i oryCun2.chrUn0106 I 157 C 0 s bosTau4.chr17 29991015 67 - 76506943 TGAGCTAAA---AAA---TCCACTTTGGAATATAAG---------------------------TAGAAATCTGAAAGATTTTATTCTTGTCT--TAGGAATA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64165545 55 - 94057673 TGGGCTAAA---AAG-TTCCCATCTTGGAATATAAA---------------------------CAAGAATCTGAG--------AGCCAGccc--tg------ i equCab2.chr8 C 0 I 371 s canFam2.chr26 3211823 62 + 42029645 TGGGCT--G---AAG-TTTCCATGTTGGAATGT-GA---------------------------CATGAATCTGAT----TTTCTTCTTGCCT--CGGGAATA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7354 56 - 12560 TGGGACAAA---AAGTTTTCCATCTTGGATTGTAAA---------------------------CAAGAATATGAA--------AGATTTTCT--CA------ i myoLuc1.scaffold_130229 C 0 I 11 s loxAfr3.scaffold_113 118179 60 - 3408981 TGGGCTAAA---AAG-TCCCTGTCTTGGAA---AAA---------------------------C-CTAATCCACAAAC---CCTGATTTTCT--TA--AACA i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 679 69 - 3798 TGAGCTAAA---ACA-TTTCTATCTTGGAATATAAA---------------------------TAGACACCTGAAAGCTTTTCTTCTTGTCT--CAGGAAAA i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 78111 67 + 154172 TGAGCTAAA---AGA-TTTCTA-CTTGGAATATAAC---------------------------T-GGTATCTGAAAGCTTTTCTTCTTGTCT--CAGGAAAA i dasNov2.scaffold_7587 C 0 C 0 s tetNig2.chr8 5997936 82 + 10512681 -----CACCCCAAGA-ACG--ATTTAAACACTAGAAATTGCTTTGCATTTGTCTATTTACATTAAAGTGTA----------TCTTCTTATGT--CCGTTTAG i tetNig2.chr8 C 0 C 0 s gasAcu1.chrXX 8105917 56 - 19732071 -----TAAC---AGA-ACGCAATCTGAAAATGAAAA---------------------------CAAGAATA----------CCTTTTTATTTTGCCAGAAAG i gasAcu1.chrXX C 0 n 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 418271 197 - 667635 I a score=-61259.000000 s hg19.chrUn_gl000223 93100 35 + 180455 ACAAACAAACCTAAATCATATACCCCACTTT---------GTTA--- s panTro2.chr12 218337 35 - 135371336 ACAAACAAACCTAAATCATATACCCCACTTT---------GTTA--- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257549 33 - 136387465 --AAACAAACCTAAATCATATACCCCACTTT---------GTTA--- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229557 35 - 134511895 ACAGACAAACCTAAATCATATACCCCACTTT---------GTCA--- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10174 35 + 14835 ATCACATAAATTTTGTGATTTATGTGATTGC---------ATAA--- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11097 33 - 39946 AAAAAACAAACTACATATTCTACTT--TTCT---------TTAA--- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s oryCun2.chrUn0106 694023 37 + 1032594 AT-------CCTAATGCACACATGCCACTTTTCTCTAATAGTGG--- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991082 37 - 76506943 -------AACCTAAACCACAAACCCCACTTTTCTTTAACAGTTT--- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3211885 11 + 42029645 -------AAGC---------------------CTC-----TTTT--- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7421 37 - 12560 -------AATCTAAACCACATACCCCACTCTTCTCTAACATTTT--- i myoLuc1.scaffold_130229 I 11 C 0 s loxAfr3.scaffold_113 118239 8 - 3408981 G---------------------------TTT---------GTTA--- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 748 1 - 3798 A---------------------------------------------- i choHof1.scaffold_177942 C 0 I 351 s dasNov2.scaffold_7587 78178 31 + 154172 AAAAACCTATTTAca-ggcatacc---ttat---------ttta--- i dasNov2.scaffold_7587 C 0 I 387 s tetNig2.chr8 5998018 35 + 10512681 ---ACAAAAACTCCAGAATATTGTGCAGTAC---------ATTGCAA i tetNig2.chr8 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 418271 197 - 667635 I e equCab2.chr8 64165600 371 - 94057673 I a score=-33078.000000 s hg19.chrUn_gl000223 93135 28 + 180455 ACTAC----------------AT--------------GCTACCAAGGCAACAACTGAT s panTro2.chr12 218372 28 - 135371336 ACTAC----------------AT--------------GCTACCAAGGCAACAACTGAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257582 28 - 136387465 ACTAC----------------AT--------------GCTACCAAGGCAACAACTTAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229592 28 - 134511895 ACTAC----------------AT--------------GTTACCAAGGCAACAACTTAT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10209 5 + 14835 ATCAC----------------------------------------------------- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11130 40 - 39946 CTCACTATTATCCA----CACAC--------------TACTTCAGAGCAACAACTCAT i otoGar1.scaffold_78004.1-39946 C 0 C 0 s oryCun2.chrUn0106 694060 34 + 1032594 ATTGC------CTC----TGTAC--------------AACTCCAGCCTAACAATTTGT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991119 46 - 76506943 ACTAT------CCAACAGTTTACTA------ACAGTTTATTCCAGTGACACTATTTAC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3211896 34 + 42029645 GTTAC------TTA----TCTGC--------------TACTCCCCAGCAGCAATTTAT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7458 34 - 12560 GTTAT------CTA----TACAC--------------TACTCTGGAGCCACCATTTAT i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118247 28 - 3408981 ----------CCTA------CAC--------------TACTCCAAGGCAACAATTTAT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 1100 30 - 3798 ----------CCTA----TGCAC--------------TACTCAAGGGCAACAATTTAT i choHof1.scaffold_177942 I 351 C 0 s tetNig2.chr8 5998053 34 + 10512681 ------------------------AGTACATGCAATAAATTATAAAGGAAGAACAGat i tetNig2.chr8 C 0 n 0 e dasNov2.scaffold_7587 78209 387 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 418271 197 - 667635 I e equCab2.chr8 64165600 371 - 94057673 I a score=26960.000000 s hg19.chrUn_gl000223 93163 34 + 180455 CAGTTAAAG-CCCTTAGGTTATAAGAAATAGAAAG- s panTro2.chr12 218400 34 - 135371336 CAGTTAAAG-CCCTTAGGTTATAAGAAATAGAAAG- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257610 34 - 136387465 CAGTTAAGG-CCCTTAGGTTATAAGACATAGAAAG- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229620 34 - 134511895 CAGTTAAAG-CCCTTAGGTTACAAGAAATAGAAAG- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10214 8 + 14835 -----------------------ATAAATTG----- i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11170 30 - 39946 CCATTAAAG-GCTTCAGGTTGTAAGAAACAG----- i otoGar1.scaffold_78004.1-39946 C 0 I 16 s oryCun2.chrUn0106 694094 26 + 1032594 CAA--------CCATAGTTGTTAAGAAATA-AAAC- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991165 32 - 76506943 CAATTAAAG-CCTTTCAGTTACAAGAAATAG-AA-- i bosTau4.chr17 C 0 I 21 s canFam2.chr26 3211930 35 + 42029645 CAGTTAAAGACCCTTCAGTAATAGGAGATAG-AAAT i canFam2.chr26 C 0 I 23 s myoLuc1.scaffold_130229 7492 34 - 12560 CAATTAGAGGCCGTACAGTTATAAGAAAGAT-GAA- i myoLuc1.scaffold_130229 C 0 I 33 s loxAfr3.scaffold_113 118275 29 - 3408981 CAATTAGAA-CATGTAGGTTATAATAAACA------ i loxAfr3.scaffold_113 C 0 I 14 s choHof1.scaffold_177942 1130 29 - 3798 CAATTAGAA-CCCTTAGATTACAAGAAACA------ i choHof1.scaffold_177942 C 0 I 21 e dasNov2.scaffold_7587 78209 387 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I e cavPor3.scaffold_248 418271 197 - 667635 I e equCab2.chr8 64165600 371 - 94057673 I a score=13143.000000 s hg19.chrUn_gl000223 93197 61 + 180455 CTggccgggctcg--gtggctcacacctgtaatcccatgactttgggaggctgaagtgggcag s panTro2.chr12 218434 61 - 135371336 CTggccgggctcg--gtggctcacacctgtaatcccatgactttgggaggctgaagtgggcgg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257644 61 - 136387465 CTggccgggctcg--gtggctcatacctgtaatcccatgactttgggaggctgaagtgggcag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229654 61 - 134511895 CCggccgggcatg--gtggctcacacctgtaatcccaagactttgggaggctgaagtgggcgg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10222 11 + 14835 -----------------------CATATGTGATT----------------------------- i micMur1.scaffold_19586 C 0 C 0 s cavPor3.scaffold_248 418468 42 - 667635 CTGGCCACCA-----GTAGCCA-------------TATGGTTCTAGGAG---GGAATGAACAG i cavPor3.scaffold_248 I 197 I 120 s oryCun2.chrUn0106 694120 35 + 1032594 TCggctggcgccgccgtagctcaacaggctaatcc---------------------------- i oryCun2.chrUn0106 C 0 I 140 e dasNov2.scaffold_7587 78209 387 + 154172 I e myoLuc1.scaffold_130229 7526 33 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_78004.1-39946 11200 16 - 39946 I e loxAfr3.scaffold_113 118304 14 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 1159 21 - 3798 I e bosTau4.chr17 29991197 21 - 76506943 I e equCab2.chr8 64165600 371 - 94057673 I e canFam2.chr26 3211965 23 + 42029645 I a score=42897.000000 s hg19.chrUn_gl000223 93258 97 + 180455 atcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctatactaaaaatacaaatattagccaggca--------------tgtaatcctagc s micMur1.scaffold_19586 10233 46 + 14835 ------------------------------------------GCAATATCCCACTTTTCCTTAACAGAC---TGTTATCTATACA---------------GTACTC----- i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 229715 111 - 134511895 atcacctgaggtcaggagttcaagaccagcctggccaacatggtaaaaccccgtctctactaaaaatacaaaaattagccaggcatggcggcaggcagctgtaattccagc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 257705 111 - 136387465 atcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccgtctatactaaaaatacaaaaattagccaggcatggtggtgggcggctgtaatcctagc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 218495 97 - 135371336 atcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctatactaaaaatacaaatattagccaggca--------------tgtaatcctagc i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 78209 387 + 154172 I e myoLuc1.scaffold_130229 7526 33 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e oryCun2.chrUn0106 694155 140 + 1032594 I e otoGar1.scaffold_78004.1-39946 11200 16 - 39946 I e loxAfr3.scaffold_113 118304 14 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 1159 21 - 3798 I e cavPor3.scaffold_248 418510 120 - 667635 I e bosTau4.chr17 29991197 21 - 76506943 I e equCab2.chr8 64165600 371 - 94057673 I e canFam2.chr26 3211965 23 + 42029645 I a score=32985.000000 s hg19.chrUn_gl000223 93355 77 + 180455 cacttgggaggctgaggcaaggaaattgcttgaacccaggaggtggaagttgcagtgagctgagatcatgccattgc s panTro2.chr12 218592 77 - 135371336 cacttgggaggctaaggcaaggaaattgcttgaacccaggaggtggaagttgcagtgagctgagatcatgccattgc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 257816 77 - 136387465 cacttgggaggctgaggcaaggaaattgcttgaacccaggaggcggaagttgcactgagctgagatcacgccattgc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 229826 77 - 134511895 tactcgggaggatgaggcaagggaattgcttgaacctgggaggcggaggttgcagtgagctgagatcacgctattgc i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10279 31 + 14835 -----------------CAAGGCAATAACTT--ATC---------------------------AATTAAGTCCTTAC i micMur1.scaffold_19586 C 0 C 0 s oryCun2.chrUn0106 694295 66 + 1032594 cccatgggagac-----caggagaagcacctggctcctggctttgga----tcagcgtggtgtg--ccagccgtagc i oryCun2.chrUn0106 I 140 I 6 e dasNov2.scaffold_7587 78209 387 + 154172 I e myoLuc1.scaffold_130229 7526 33 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_78004.1-39946 11200 16 - 39946 I e loxAfr3.scaffold_113 118304 14 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 1159 21 - 3798 I e cavPor3.scaffold_248 418510 120 - 667635 I e bosTau4.chr17 29991197 21 - 76506943 I e equCab2.chr8 64165600 371 - 94057673 I e canFam2.chr26 3211965 23 + 42029645 I a score=5740.000000 s hg19.chrUn_gl000223 93432 48 + 180455 attccagcc------tggaggac----------aagagtgaaacttag----------------------------tctcaaaaaaaaaaaa s oryCun2.chrUn0106 694367 92 + 1032594 gccgcagcggccattgggggggtgaaccaatggtaaaggaagacctttctctctgtctctctctgtccactctgcctgtcaaaaaaaaaaaa i oryCun2.chrUn0106 I 6 C 0 s cavPor3.scaffold_248 418630 43 - 667635 ATCCCAG--------GGCAAGATTTATCAGT--TAAAG-----CCCTT----------------------------------AAGTTATAAA i cavPor3.scaffold_248 I 120 C 0 s micMur1.scaffold_19586 10310 38 + 14835 ATTATAA--------------------------GAAATAGTAACTCAT----------------------------TCCTCTTAAGCAAAAA i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 229903 48 - 134511895 actccagcc------tgggggac----------aagagcaaaacttag----------------------------tctcaaaaaaataaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 257893 48 - 136387465 attctagcc------tggaggac----------aagagcgaaacttag----------------------------tctcaaaaaaaaaaaa i ponAbe2.chr12 C 0 I 50 s panTro2.chr12 218669 48 - 135371336 attccagcc------tggaggac----------aagagtgaaacttag----------------------------tctcaaaaaaaaaaaa i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 78209 387 + 154172 I e myoLuc1.scaffold_130229 7526 33 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e gorGor1.Supercontig_0208698 1476 17 - 4218 I e felCat3.scaffold_141205 1063 1013 - 2858 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_78004.1-39946 11200 16 - 39946 I e loxAfr3.scaffold_113 118304 14 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 1159 21 - 3798 I e bosTau4.chr17 29991197 21 - 76506943 I e equCab2.chr8 64165600 371 - 94057673 I e canFam2.chr26 3211965 23 + 42029645 I a score=-18000.000000 s hg19.chrUn_gl000223 93480 22 + 180455 ----------aaaaaaaaaaaa-----------------aaaaaaaCCC s micMur1.scaffold_19586 10348 6 + 14835 --------------AA-CCCA---------------------------- i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 229951 39 - 134511895 ----------aagaaatagaaaGTCATTCTTCTTAAGAAAAAAAAACAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 257991 22 - 136387465 ----------aaaaaaaaaaaa-----------------aaaaaaCCCC i ponAbe2.chr12 I 50 C 0 s gorGor1.Supercontig_0208698 1493 22 - 4218 ----------AAAAAAAAAAAA-----------------AAAAAAACCC i gorGor1.Supercontig_0208698 I 17 C 0 s panTro2.chr12 218717 15 - 135371336 ----------aaaaaaaaaaaa------------------------CCC i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 418673 15 - 667635 ----------AAAAAATG------------------------AAAACCC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 694459 31 + 1032594 ----------aaaaaaaGAAGA--------AGAAGAAGAAATAAAACTC i oryCun2.chrUn0106 C 0 C 0 s felCat3.scaffold_141205 2076 24 - 2858 taaactta-aaaaaaaaattaa------------------------CTC i felCat3.scaffold_141205 I 1013 I 4 s equCab2.chr8 64165971 17 - 94057673 --------acaagaaatagaaa------------------------ctc i equCab2.chr8 I 371 I 8 e dasNov2.scaffold_7587 78209 387 + 154172 I e myoLuc1.scaffold_130229 7526 33 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e otoGar1.scaffold_78004.1-39946 11200 16 - 39946 I e loxAfr3.scaffold_113 118304 14 - 3408981 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.chr1 39120664 0 - 39973033 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I e choHof1.scaffold_177942 1159 21 - 3798 I e bosTau4.chr17 29991197 21 - 76506943 I e canFam2.chr26 3211965 23 + 42029645 I a score=-94993.000000 s hg19.chrUn_gl000223 93502 22 + 180455 AAACAA------C--------AAAAAGCAAAAGACA s loxAfr3.scaffold_113 118318 12 - 3408981 --------------------AAGCAGAAAAAA---- i loxAfr3.scaffold_113 I 14 C 0 s otoGar1.scaffold_78004.1-39946 11216 29 - 39946 AAGCAA------TAAATCCCAAAACAACGAAA-ACA i otoGar1.scaffold_78004.1-39946 I 16 C 0 s micMur1.scaffold_19586 10354 21 + 14835 AACCAA------T--------AAAAAACAAAA-ACA i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 229990 22 - 134511895 AAACAA------C--------AAAAAGTAAAAGACA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258013 22 - 136387465 AAACAA------C--------AAAAAGCAAAAGACA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1515 22 - 4218 AAACAA------C--------AAAAAGCAAAAGACA i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 218732 22 - 135371336 AAACAA------C--------AAAAAGCAAAAGACA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 418688 27 - 667635 ATTCCT------C--TTATGAAAGAAATCCCT-ACA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 694490 29 + 1032594 ATTCCT------CAATTAAGCAAAAAATAAAA-ACA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64165996 21 - 94057673 taacttcaa---c--------aggaaaaaaaa---- i equCab2.chr8 I 8 C 0 s felCat3.scaffold_141205 2104 21 - 2858 TAACTTTAG---C--------AGAAAAAAACA---- i felCat3.scaffold_141205 I 4 C 0 s canFam2.chr26 3211988 24 + 42029645 AAACAAAAGAAAC--------CAAAAAACCCA---- i canFam2.chr26 I 23 C 0 s oryLat2.scaffold1367 20081 8 - 36351 ------------------------aaacaaca---- i oryLat2.scaffold1367 n 0 C 0 s danRer6.chr4 43818757 15 - 71658100 -----------------aaagaaagaatgata---- i danRer6.chr4 N 0 C 0 s choHof1.scaffold_177942 1180 10 - 3798 ----------------------GCAGAAAAAC---- i choHof1.scaffold_177942 I 21 C 0 s dasNov2.scaffold_7587 78596 10 + 154172 ----------------------GCAGAAAAAC---- i dasNov2.scaffold_7587 I 387 C 0 s bosTau4.chr17 29991218 11 - 76506943 ---------------------AGAAAATAATA---- i bosTau4.chr17 I 21 C 0 e myoLuc1.scaffold_130229 7526 33 - 12560 I e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I a score=18615.000000 s hg19.chrUn_gl000223 93524 47 + 180455 T--T-TTTATTGAGAAG-----------------------T----GAGGAAAC--A--CAC---AGA---TCAGAGAAGCAGGTT-C-T s dasNov2.scaffold_7587 78606 54 + 154172 --AT-TTTATTGAAAAGA--------------------TCT----CAGGAAGCACA--CAG--AAGG---CCAGCGAGCCAGGTT-CAA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_177942 1190 53 - 3798 --TT-TTTATTGGAAAGA--------------------TCT----CAGGGAGCCAA--CAG---AGG---CCAGACAGCCAGGTT-CAA i choHof1.scaffold_177942 C 0 C 0 s loxAfr3.scaffold_113 118330 46 - 3408981 --ATGTTTATTTAAAAGA--------------------TA-----CTGTAAGC--A--CAG---AGG---CCAGAAAGCCAGG------ i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_130229 7559 54 - 12560 t--t-tttattaaaaaGA--------------------TAC----GAGGAAGC--A--CCCATAAAG---CCAGAAAACCAGGTT-CAA i myoLuc1.scaffold_130229 I 33 C 0 s canFam2.chr26 3212012 46 + 42029645 T--T-TTTATTGAAGA-----------------------------GAGGAAGG--A--CAC---AGG---GCAGAAAACCAGGTT-CAA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_141205 2125 47 - 2858 C--T-TTTACTGGAGAG----------------------------GAGGAAGC--A--CAC---AGG---CCAGCAAAGCAGGTG-CAA i felCat3.scaffold_141205 C 0 C 0 s equCab2.chr8 64166017 54 - 94057673 t--t-tttattgaaaagg--------------------tat----gaggaagc--a--cacagaagg---ccagaaaaccaggtt-AAA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29991229 52 - 76506943 T--T-TTTATTGCAAA----------------------TAT----GAGGAAGC--G--CACAGAACA---CCAGAAAATTAGGTT-CAG i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 694519 52 + 1032594 TACT-TTTATTGAGAAAA--------------------TAG----AAGGAAGC--A--CAC---AGC---CCAGAGAACCAGGTT-C-A i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 418715 58 - 667635 T--T-GTTACTGAAAATG--------------------TAGATACAAGGAAGC--A--TAA---AGAACGCCCAAGAACCAAGTTCC-A i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 218754 47 - 135371336 T--T-TTTATTGAGAAG-----------------------T----GAGGAAAC--A--CAC---AGA---TCAGAGAAGCAGGTT-C-T i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1537 47 - 4218 T--T-TTTATTGAGAAG-----------------------T----GAGGAAAC--A--CAC---AGA---TCAGAGAAGCAGGTT-C-T i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258035 47 - 136387465 T--T-TTTATTGAGAAG-----------------------T----GAGGAAAC--A--CAC---AGA---TCAGAGAAGCAGGTT-C-T i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230012 49 - 134511895 T--T-TTTATTGAGAAG-----------------------T----GAGGAAAC--AACAGA---AGA---TCAGAGAAGCAGGTT-C-T i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10375 54 + 14835 G--T-TTTATTGAGAAGA--------------------TAT----GAGGAAGC--A--CAC---AGAAGGCCAGCAAGCCAGGTT-CAA i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11245 54 - 39946 T--T-TTTATTGAGAAGT--------------------TAT----GAGGAAGC--A--CAC---AGAAGGCCAGAGAACCAAGTT-CAA i otoGar1.scaffold_78004.1-39946 C 0 C 0 s danRer6.chr4 43818772 15 - 71658100 t--t-------------------------------actttt----ggggcag------------------------------------- i danRer6.chr4 C 0 C 0 s oryLat2.scaffold1367 20089 45 - 36351 t--t-tttgttagaaatgacagacacacacagagggcttca----gaaacag------------------------------------- i oryLat2.scaffold1367 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I e xenTro2.scaffold_469 501234 0 + 935966 I a score=37836.000000 s hg19.chrUn_gl000223 93571 47 + 180455 AAAG-GGA--TCGTATCCACAGTTATTCTTGTA-ATCAAT----TAGCCAGAATG s otoGar1.scaffold_78004.1-39946 11299 43 - 39946 AAAG-GTA--TAGAATCCAAAGTTATTCTGGGA-ATCAAT---GTAGCA-----G i otoGar1.scaffold_78004.1-39946 C 0 C 0 s micMur1.scaffold_19586 10429 36 + 14835 AAAG-GGA--TAGTATCCAAAGTTATTCTGGGA-ATTAAT--------------- i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230061 47 - 134511895 AAAG-GGA--TAGTATCCACAGTTATTCTTGTA-ATCAAT----TAGCCAGAATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258082 47 - 136387465 AAAG-GGA--TAGGATCCACAGTTATTCTTGTA-ATCATT----TAGCCAGAATG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1584 47 - 4218 AAAG-GGA--TCATATCCACAGTTATTCTTGTA-ATCAAT----TAGCCAGAATG i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 218801 47 - 135371336 AAAG-GGA--TCGTATCCACAGTTATTCTTGTA-ATCAAT----TAGCCAGAATG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 418773 24 - 667635 AGAT--------------------------GGA-ATCAGT----GTAACAGAATT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 694571 48 + 1032594 AAATGGAA--TAGCATCCACAGTTATCCTGGGA-ATCAAT----TCGGCAGAACT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991281 41 - 76506943 AA-----------TATCCAAAGTTATCCTGAGAAATTGAA---ATAGCAGGAACT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166071 49 - 94057673 AAAT-GGA--CAGTATCCAGAGTTATTCTGGAAAGTCAAC---ACAGCAGGAACT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141205 2172 48 - 2858 AGAG-AGA--CAGCACCCAGAGTTATTCTGGGAAACCAGG---AGGGCAGGAG-G i felCat3.scaffold_141205 C 0 C 0 s canFam2.chr26 3212058 47 + 42029645 AGAG-GGA--TGGCACCC--AGTTATTCTGGGAAACCAAT---ACAGCAGGAGCG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7613 43 - 12560 AAAG-GGA--CAGTATTC--AGTAAGTCTAGGATATCAAT---ACAGCAG----G i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118376 43 - 3408981 ------GG--CAGTACCCAAAGTTACTGTGGGA-ATCAAT---TTATCAGGAACT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 1243 48 - 3798 AAAG-CGA--CAGTATCCAGAGTTGCTCTAGGA-ATCAAC---TTAGTAGGAACT i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 78660 48 + 154172 AAAG-CAG--CAGTATCCAGAGTTGCTCTAAGA-ATCGAC---TTAGTAGGAACT i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_677 213135 47 + 553670 AAAT-GGC--TTCTCCCCTATGTGGATTCTATA-ATGAAT----TTTAAGGAGTG i xenTro2.scaffold_677 I 7158 C 0 s danRer6.chr4 43818787 48 - 71658100 aagg-aaa--atttaattagagacattgccatg-attaac-tcttcgttaaaa-- i danRer6.chr4 C 0 I 11 s oryLat2.scaffold1367 20134 47 - 36351 ctga-aaatcatttatttagaaacatt----ta-ataaatattttctctGATG-- i oryLat2.scaffold1367 C 0 I 3 e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I a score=131000.000000 s hg19.chrUn_gl000223 93618 52 + 180455 AATGGATGTT-CTC-----AACAGAATTCT--------GGGACAAGAATGAAT----------------GAGTTCCCACATT s otoGar1.scaffold_78004.1-39946 11342 52 - 39946 AACTGGTGGT-CTC-----AAAAGAATTCT--------GGGACAAGAATAAAT----------------GGGTTCTCACAAT i otoGar1.scaffold_78004.1-39946 C 0 I 4 s micMur1.scaffold_19586 10465 49 + 14835 ---TGATGCG-CTC-----AACAGAATTCT--------GGGACAAGAATAAGT----------------GGGTTCCCACAAT i micMur1.scaffold_19586 C 0 I 4 s rheMac2.chr11 230108 52 - 134511895 AATGGATGTT-CTC-----AACAGAATTCT--------GGGACAAGATTGAAT----------------GAGTTCTCACATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258129 52 - 136387465 AATGGATGTT-CTC-----AACAGAATTCT--------GGGACAAGAATGAAT----------------GAGTTCCCACATT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1631 52 - 4218 AATGGATATT-CTC-----AACAGAATTCT--------GGGACAAGAATGAAT----------------GAGTTCCCACATT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 218848 52 - 135371336 AATGGATGTT-CTC-----AACAGAATTCT--------GGGACAAGAATGAAT----------------GAGTTCCCACATT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 418797 52 - 667635 AATTGATAGT-CTC-----AAAAGCATTCC--------AGGACAAAATCAAAT----------------GAGTTTCCACATT i cavPor3.scaffold_248 C 0 I 3 s oryCun2.chrUn0106 694619 52 + 1032594 AACTGAAGGT-CTT-----AATTGGACTCT--------GGAACAGGAACAAAT----------------AAATTCCCACATG i oryCun2.chrUn0106 C 0 I 3 s bosTau4.chr17 29991322 45 - 76506943 ATTTGATGGT-CTT-----AA---AACTGT--------GGTACAAGAAT--------------------GAATTCTGATATT i bosTau4.chr17 C 0 I 4 s equCab2.chr8 64166120 51 - 94057673 AACTGCTGGT-CTC-----AGTCGAATTCT--------GGGACAAGAATATGT----------------GAGTTTCCA-ACT i equCab2.chr8 C 0 I 4 s felCat3.scaffold_141205 2220 47 - 2858 AATTGATGGT-CTC----------AACTCT--------GGGGCAAGAGTAAGT----------------GAGTTCCCACACT i felCat3.scaffold_141205 C 0 I 4 s canFam2.chr26 3212105 46 + 42029645 AATTGATGGTCCTC----------AATTCT---------GGGCAAGAGTGAGT----------------GAGTG-CCACAGA i canFam2.chr26 C 0 I 4 s myoLuc1.scaffold_130229 7656 52 - 12560 AACCGATTAT-CTG-----AATAGAATTCT--------GGGAGAAGAACATAG----------------GAGTTCCCACATT i myoLuc1.scaffold_130229 C 0 I 4 s loxAfr3.scaffold_113 118419 50 - 3408981 AAT-GATGAT-CTC-----AATAGAATTCT--------GTAGTAA-AATAAAT----------------GAGTTCCCACCTT i loxAfr3.scaffold_113 C 0 I 4 s choHof1.scaffold_177942 1291 31 - 3798 CAT-----------------------TTCT--------GGGTCAAGAATAAA--------------------TTCCCACATT i choHof1.scaffold_177942 C 0 I 4 s dasNov2.scaffold_7587 78708 49 + 154172 CATCAACGAA-CTC--------AGAATTAT--------TGGACAAGAATAAAT----------------GAGTTTCCACATT i dasNov2.scaffold_7587 C 0 I 4 s xenTro2.scaffold_677 213182 54 + 553670 ATT----GCT-TTG-----AAAAACATTTCCCACATTCAGAACAAGAA--AAT----------------GGTTTCTCCCCTG i xenTro2.scaffold_677 C 0 C 0 s fr2.chrUn 102954999 39 - 400509343 AATCGTAGTT-CTC-----AAAATGAATgt--------ataaaaatattaaat----------------------------- i fr2.chrUn N 0 C 0 s oryLat2.scaffold1367 20184 58 - 36351 TAACCTGCTT-CACTTGGAAACACAGGTGT--------AGACAAAGGTAAACT---------AGCTAGCAGGT------AAC i oryLat2.scaffold1367 I 3 C 0 s danRer6.chr4 43818846 58 - 71658100 --ataaagtg-ctc-------------tga--------taaaaagtgtcagctttgcacaccagtttgcagttcttcacatt i danRer6.chr4 I 11 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 29559 9371 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I a score=248936.000000 s hg19.chrUn_gl000223 93670 125 + 180455 TTCTGGTTCATGTACAAATGAATTACAGACTCAAAATTCTGAAAAAGAG-------ATTACC--------------ATTATCCA----ACA--------ATGGGTAAAATGCTCACC--TGTAGCTAG-T-GGAACGGATA---------------CCTGAAAG-----ACA-CT-ACCACAGG s panTro2.chr12 218900 125 - 135371336 TTCTGGTTCATGTACAAATGAATTACAGACTCAAAATTCTGAAAAAGAG-------ATTACC--------------ATTATCCA----ACA--------ATGGGTAAAATGCTCACC--TGTAGCTAG-T-GGAACGGATA---------------CCTGAAAG-----ACA-CT-ACCACAGG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1683 125 - 4218 TTCTGGTTCATGTACAAATGAATTACAGACTCAAAATTCTGAAAAAGAG-------ATTACC--------------ATTATCCA----ACA--------ATGGGTAAAATGCTCACC--TGTAGCTAG-T-GGAATGGATA---------------CCTGAAAG-----ACA-CT-ACCACAGG i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258181 125 - 136387465 TTCTGGTTCATGTGCAAATGAATTACAGTCTCAAAATTCTGAAAAAGAG-------ATTACC--------------ATTATCCA----ACA--------ATGGGTAAAATGCTCACC--TGTAGCTAG-T-GGAACGGATA---------------CCTGAAAG-----ACA-CT-ACCACAGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230160 125 - 134511895 TTCTGGTTCACGTGTGAATGAATTACAGACTCAAAATTCTGAAAAAGAG-------ATTACC--------------ATTATCCA----ACA--------ATGGGTAAAATGCTCACC--TGTAGCTAG-T-GGAACGGATA---------------CCTGAAAG-----ACA-CT-ACCACAGG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10518 124 + 14835 TTCTGGTTTATGTGTGACTGAATTACAGGCTCAAAATCCTGAAAAAGAG-------GTTACC--------------AATATTCA----GCA--------ATGTGTATAATACTTA-C--TGTGGTGAG-T-AGAAGGGCTA---------------CCTGAAAG-----ACA-CT-GCCACAAG i micMur1.scaffold_19586 I 4 C 0 s otoGar1.scaffold_78004.1-39946 11398 125 - 39946 TTCTGGTTCATGTGTGACTGAATTACAGACTCAAAATCCTGAAAAAGAG-------GTTACT--------------ATTATTCA----ACA--------ATGGGTATAATGCTTACC--TGTTGCCAG-T-GGAAAGGATA---------------CCTGAAAG-----ATA-CC-ACCACCAG i otoGar1.scaffold_78004.1-39946 I 4 C 0 s tupBel1.scaffold_103331.1-57811 38930 118 - 57811 TTCTGGTTCATGCAGAATTGAATTACAGACTCAAAATCCTGGGAAACAC-------ATTGCT--------------ATTACCCA----ACA--------ATT------ACACTCACC--TGTGACCAG-T-AGAAAGAAAA--------------CCCTTAAAG-------A-CT-ACCACAAG i tupBel1.scaffold_103331.1-57811 I 9371 I 698 s cavPor3.scaffold_248 418852 125 - 667635 CTCTGCTTTATGTGAGGCTGAATTACAGATTCAAAATCCTGGAAAAGAG-------GGTATG--------------ATTACCCA----GCT--------ATGAGTATAATGCTTCCC--TGTAGCTGG-C-AGAAAGGAAA---------------TCTGAAAA-----ACA-CT-ACCCTAAG i cavPor3.scaffold_248 I 3 I 1 s oryCun2.chrUn0106 694674 92 + 1032594 CTTCTGATCACGTCAGACTGCAC------------ATCTCGG--CAGAG-------ATTACC--------------ATTATCTG----ATG--------ACG--------------------GGCTAG-T-GGGAAGGATA---------------CCTG-AAG-----GCA-CT-ACTGCCAA i oryCun2.chrUn0106 I 3 I 1 s bosTau4.chr17 29991371 127 - 76506943 TTCTGGTTCATGTGAGACTGAATTAGAGACTCAAACTCCTGGAAAAGAT-------GTCATC--------------ATGACTCA----ACC--------GT-GGCAGAATGCTCACC--TATGGCTGG-TGGGAAGGACAC---------------CCTGAGAG---ATACA-CC-ACAAGGAT i bosTau4.chr17 I 4 C 0 s equCab2.chr8 64166175 123 - 94057673 TTCTGCTTCATGTGA-AATGAATTAGAGACTCCAAGTCCTGGAAAAGAG-------GCTGCC--------------ACTACCCA----ACA--------ACGGGCACGATGCTCACC--TGTGGCTAG-T-GGAGAG-CAC---------------CCTGAAAG-----ACA-CT-GCCAAAGG i equCab2.chr8 I 4 C 0 s felCat3.scaffold_141205 2271 95 - 2858 TTCTGGTTCATGTGACACTGAATCTGAGGCTCAAAATCT-AGCAAAGA---------------------------------------------------------------TCCAGC--AATGGCTGA-T-GAACAGATGC---------------CCGGAAAG-----ACG-CCAACTGGACA i felCat3.scaffold_141205 I 4 C 0 s canFam2.chr26 3212155 121 + 42029645 -TCTGGTTCATACTACACCCAA----AGACTCAGAATCC-AGGAAAGAG-------GCTACC--------------ATGACCTG----GAA--------GTGGGCATAATGCTCACC--TGTGGCTGG-TAGAACAGGTGC---------------CCTGAAAG-----ACA-CCAACCCAGAG i canFam2.chr26 I 4 C 0 s myoLuc1.scaffold_130229 7712 112 - 12560 TTATGGTTCATGTGAGATTGAATT--AAATTAAAAATCCTGGAAAAGAG-------GCTACT--------------ATTATCCA----ATA--------ATGGGAATAACGCCTTCC--TGTCACTAG-T-GGA--------------------------AAAG-----ACA-CC-ACAAGGAG i myoLuc1.scaffold_130229 I 4 C 0 s loxAfr3.scaffold_113 118473 123 - 3408981 CTCTGGTTCATGTGAGACTGAAGAACAGACTAAAAACCCTGGATGAGAC-------ATTACC--------------GTTACCCA----ACA--------GTGAG---AATGCTCACC--TTTGGCTAG-T-GGAAGGGACA--------------ACCTGAAAG-----ACA-CT-GCCACAAG i loxAfr3.scaffold_113 I 4 I 1 s choHof1.scaffold_177942 1326 109 - 3798 ATCTAATTCATGTGAGATTGAACTGCAGACTC--AGTACTGGAGAAGAT-------TCTAT-----------------TACCCA----ACA--------ACGGGCCCAGTGCCCATC--TTTGACTAT-T-GTAAAG--------------------------G-----ACA-TT-ATCACAAG i choHof1.scaffold_177942 I 4 I 1 s dasNov2.scaffold_7587 78761 127 + 154172 CTCTGGTTCATATGAGATTGAACTGGAGAGTCAAAATACTGGAGGAGAG-------GTTCC-----------------TTGTCAAAATACA--------ATGGGCGTAATGCTCACC--TTTGGCTAA-T-GTAAAGGACA--------------CCCTGGAAG-----ACA-TT-ACCACAAG i dasNov2.scaffold_7587 I 4 I 1 s xenTro2.scaffold_677 213236 141 + 553670 -TGTGGATTCTATGA---TGAATTTTAAGATGAGATTGCTTTGAAAAAC-------ATTTCC--------------CACATTCAGA--ACA--------AGAAAATGGTTTCTCCCCTGTGTGGGTTC-T-ATAATGAATTTTCAGGTCATATTGCTCTGAAAA-----ACATCT-CCCACATT i xenTro2.scaffold_677 C 0 C 0 s fr2.chrUn 102955038 112 - 400509343 -----atggGTCTATCAAATGGGTATAGGTATGG-Gtcttcaaaaagaa-------aactaa--------------attaatca----taa--------aataaatcatgattCAAA--TTTAAC----T-AGTAAT-GAA---------------TGCGAAAACTACTATA-TC--------- i fr2.chrUn C 0 C 0 s oryLat2.scaffold1367 20242 132 - 36351 GGTTGATGGATCTATGACTTGGTTatca---------tttcaaaattaatt-----aattaacaaTATTATTTCATATTAACTC----CAATACAAACTAACaaatattgtctttta--tttgacACT-T-TGTAACAGGA---------------TCCTAAAA-----gca-ac--------- i oryLat2.scaffold1367 C 0 C 0 s danRer6.chr4 43818904 130 - 71658100 gtctaatt--tttcccatgtgggcagtagggtggaatctgtgcaatatattatgcaaataaa--------------atgaattt----tcata------aataaaattattcttaaa--agtcatattat-tgtatgtgcg---------------gtggagaaaaggtgtg-tt--------- i danRer6.chr4 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I a score=-61063.000000 s hg19.chrUn_gl000223 93795 83 + 180455 A-AGCACCCCAGAGAGGG---GAGGTATTTCTCCAGAGAAAACAGG-GGTGCTCAT------G--------TCAATCA--ATGGACAACAGGCA--TGGAACTGC-A s panTro2.chr12 219025 83 - 135371336 A-AGCACCCCAGAGAGGG---GAGGTATTTCTCCAGAGAAAACAAG-GGTGCTCAT------G--------TCAATCA--ATGGACAACAGGCA--TGGAACTGC-A i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1808 83 - 4218 A-AGCACCCCAGAGAGGG---GAGGTATTTCTCCAGAGAAAACAAG-GGTGCTCAT------G--------TCAATCA--ATGGACAACAGGCA--TGGAACTGC-A i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258306 83 - 136387465 A-AGCACCCCAGAGAGGG---GAGGTATTTCTCCAGAGAAAACAAG-GGTGCTCAT------G--------TCAATCA--ATGGACAACAGGCA--TGGAACTGC-A i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230285 83 - 134511895 A-AGCACCCCAGAGAGGG---GAGGTATTTCTCCAGAGAAAACAAG-GGTGCTCAT------G--------TCAATCA--ATGGACAACAGGCA--CGGAACTGC-A i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10642 85 + 14835 GAAGCACCCAAGAGAGGG---GAGGTATTCCTCCAGAGAACACAAG-GGTGCTCAC------A--------TAAACCA--ATGGAGAACAGACA--CTGAACTGCTA i micMur1.scaffold_19586 C 0 C 0 s otoGar1.scaffold_78004.1-39946 11523 73 - 39946 G-AGCACTCGAGAGAGGA---GAGGCATTTCTCCAGAGAAAACTAG-GGCACTCAT------A--------TCAACCA--ATGGAGAACAGACA------------- i otoGar1.scaffold_78004.1-39946 C 0 I 2278 s cavPor3.scaffold_248 418978 71 - 667635 A-AATA--TAAACCAGAG---GAGTGATTTCTCAAAAGAACACAAG-GGAGCTCCT------G--------G---TTA--TCAAAGAACAG---------ACTCCT- i cavPor3.scaffold_248 I 1 C 0 s oryCun2.chrUn0106 694767 71 + 1032594 A-AGCA--CAGGACAGAG---GTGGTATTTCTCTAGCAAAAACAGA-GGGGCTCAT------A--------G----CA--ACGGATAGCAA---------ACTGCTA i oryCun2.chrUn0106 I 1 C 0 s bosTau4.chr17 29991498 82 - 76506943 G-TGCACAAC--ATAGGA---GGAGTATCTCTCCAGAGAATTCTAA-GCCACTGTT------A--------TCAATAA--ATAGGGAGCAGACA--CCGAATTGCTA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166298 81 - 94057673 A-CGCACAC-----CAGAGTGGAGGTGCTTCTCCAG-GAAGGCTAG-GGTGCTCCT------A--------TCAATCT--ATGGAGAACAGACC--CTGAACTGCTA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141205 2366 71 - 2858 A-CGCACAC-------GA---GAGGTGCTTCTGCAGAGAAAACTAGTTGTGCTCTT------A--------CCCGT---------GAACAGACA--CCGCACTGCTA i felCat3.scaffold_141205 C 0 C 0 s canFam2.chr26 3212276 81 + 42029645 A-TGCACAT---ATCAGA---GAGGTGCTCCTCCAGAGAAAACCAG-AGTGCTCTT------A--------CTCATCA--GTGAAGAACAGACT--CTGAACTGCTA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7824 59 - 12560 G-CACACAC--------A---GAGGTACTTGTGCAGAGAAAACTAC----------------------------------AAGGGGAATGGACA--CCGAGCTGCTA i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118597 71 - 3408981 A-CTCACAC---AACAGA---GAGGCGTTTCTCCACAGAGAA-----------CAT------A--------TTAGTGG--ATGGAGAATAGATA--CTGAACTGCTC i loxAfr3.scaffold_113 I 1 C 0 s choHof1.scaffold_177942 1436 81 - 3798 A-TGCACAC---AACAGA---GATATATTTCTCCAAAGAAAACTAG-GGTACTCTT------A--------TCAATGA--ATGGGGAGCAGATA--CTAAAGTGCAA i choHof1.scaffold_177942 I 1 C 0 s dasNov2.scaffold_7587 78889 73 + 154172 A-TGCACAC---A-----------GTATTTCTCCAAAGAAAGTTAG-GGTATTCCA------A--------ACAATGA--ATGGAGAAGAGATA--CTGAAATGCAA i dasNov2.scaffold_7587 I 1 C 0 s xenTro2.scaffold_677 213377 50 + 553670 --------CAGAACATGA---AAATGGTTTCTCC-------------CCTGTGTGA------G--------TCCTTTG--ATGACGATCA----------------- i xenTro2.scaffold_677 C 0 I 19 s fr2.chrUn 102955150 72 - 400509343 ---------------------------TCACACCATAGAACTTGAT-CACTTTTAT---AGAACCATTAATTTGACCATGGTAGCCAATGTGTTAT---GGTtatg- i fr2.chrUn C 0 N 0 s oryLat2.scaffold1367 20374 65 - 36351 ---------------------------taacaaaaaaaaccccaaa-gtttTTTGT-TCAGAA--------TTGAC----ACACACAAGGTGCTTctgaaatggca- i oryLat2.scaffold1367 C 0 n 0 s danRer6.chr4 43819034 62 - 71658100 ---------------------------tcaatccagcttttgcaag-tatatttatgttaaag--------ataat----atgtgcaatatatatt----attata- i danRer6.chr4 C 0 I 7 e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 39048 698 - 57811 I e petMar1.Contig485 58039 0 + 58350 I e gasAcu1.chrXX 8105973 0 - 19732071 I e tetNig2.chr8 5998087 0 + 10512681 I a score=83278.000000 s hg19.chrUn_gl000223 93878 35 + 180455 AAATATAATAAACGTT-----CA------TTATAATGAG-TTCTCTT s micMur1.scaffold_19586 10727 35 + 14835 AAATATAATAAATGTT-----CA------TTATGATGAC-TTCTCTT i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230368 35 - 134511895 AAATATAATAAACGTT-----CA------TTACAATGAG-TTCTCTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258389 35 - 136387465 AAATATAATAAACGTT-----CA------TTACAATGAG-TTCTCTT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1891 35 - 4218 AAATATAATAAACGTT-----CA------TTACAATGAG-TTCTCTT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219108 35 - 135371336 AAATATAATAAACATT-----CA------TTACAATGAG-TTCTCTT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 419049 33 - 667635 --ACTTGACCAGCATT-----CA------TTGCAATGCA-TTCTGTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 694838 35 + 1032594 AAATACAATAAATGTT-----CA------TTGTGATGAG-TTCCCTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991580 34 - 76506943 A-ATACAATCAATCTT-----CA------TTACCATGAG-TGCTCTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166379 29 - 94057673 GGAGACAA---ACATA-----CA------TTGCACT----TTCTCTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141205 2437 35 - 2858 ACATATAATCCACGTT-----CG------TTCCAATGAG-TTCTCTT i felCat3.scaffold_141205 C 0 C 0 s canFam2.chr26 3212357 32 + 42029645 AAATATAATCCACATT-----CA------TTTCGAT----TTCTCTC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7883 35 - 12560 AAATATACTCGACGTT-----CA------TTACAATGCG-TTCTCTT i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118668 32 - 3408981 AAATATAGTAAACATC-----CA------TTACGAGGG---TTGTT- i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 1517 32 - 3798 AAATAT---AACTGTT-----CA------TTATGATGCG-TTCTTTT i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 78962 34 + 154172 AGACATAG-AGACATT-----CA------TCACGATGGG-CTTGCTT i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_677 213446 39 + 553670 -AACATTTCCCACATTCAGAACA------TAAAAATGGT-TTCTCCC i xenTro2.scaffold_677 I 19 C 0 s gasAcu1.chrXX 2374494 30 + 19732071 AAATCTGTT-AGACAT-----CA-------CTTAAGGGT-TTAT--- i gasAcu1.chrXX n 0 C 0 s fr2.chrUn 75555617 31 + 400509343 --ATTtgtcaaaactt-----ta------ttttaaagct-ttatt-- i fr2.chrUn N 0 C 0 s danRer6.chr4 43819103 40 - 71658100 taatgtttgggaacat-----tgacacagccataatgttcttatg-- i danRer6.chr4 I 7 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e tupBel1.scaffold_103331.1-57811 39048 698 - 57811 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.scaffold1367 20439 0 - 36351 I e tetNig2.chr8 5998087 0 + 10512681 I a score=136808.000000 s hg19.chrUn_gl000223 93913 33 + 180455 AAGCGGCAGCCCTGTAATAAATGCCAGATC----TGC s panTro2.chr12 219143 33 - 135371336 AAGCGGCAGCCCTGTAATAAATGCCAGATC----TGC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1926 33 - 4218 AAGCGGCAGCCCTGTAATAAATGCCAGATC----TGC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258424 33 - 136387465 AAGTGGCAGTCCTGTAATAAATGCCAGATC----TGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230403 33 - 134511895 AAGCGGCAGCCCTGTAATAAACACCAGATC----TGC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10762 33 + 14835 AAGCAATAGCCCTATAACAACTGCCAGACC----TGC i micMur1.scaffold_19586 C 0 C 0 s tupBel1.scaffold_103331.1-57811 39746 33 - 57811 AAGCAGCAGCCCTGTAATAACTGCCAGACC----TAC i tupBel1.scaffold_103331.1-57811 I 698 C 0 s cavPor3.scaffold_248 419082 33 - 667635 AAGAAGCAACCCTGTCTTACCTGCAAGACC----TGT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 694873 33 + 1032594 AAGAAGCAACCCTGTAATAACTGCCAGTCC----TGC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991614 33 - 76506943 GGAAAGCAGCCCTGTAAAAATGGACAGACC----CAC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166408 32 - 94057673 AAGTGGCAGTTCTGCAATAAGTGCC-GACC----CAC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_141205 2472 33 - 2858 ATGCAGCAGCCGCGTAATAACTGCCAGACC----CAC i felCat3.scaffold_141205 C 0 C 0 s canFam2.chr26 3212389 33 + 42029645 ACACAGCAGCCCTCTGATAAATGTCAAACC----CAC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 7918 30 - 12560 ---CAGCAGCCCTGTGATTATTGCCAGACC----CAC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 118700 31 - 3408981 --AAGGCGGCCCTGTAACAACTGCCACACC----CAC i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_177942 1549 33 - 3798 AAGAGGCAGCCCTGAAACAACTGCAAAATC----TCC i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 78996 33 + 154172 AAGAGGCAGCCCTGTAACGAACGCCCACCC----TGC i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_677 213485 37 + 553670 CTGTGTGGGCTCTATAATGACGATCAAGCTCAGATAC i xenTro2.scaffold_677 C 0 C 0 s gasAcu1.chrXX 2374524 14 + 19732071 ------------CAGTTTAACAGATG----------- i gasAcu1.chrXX C 0 C 0 s fr2.chrUn 75555648 26 + 400509343 gcACGGTGATTCCGCTTTTACTGCCA----------- i fr2.chrUn C 0 I 10 s danRer6.chr4 43819143 20 - 71658100 atacaaaca---cagattaaata-------------- i danRer6.chr4 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e petMar1.Contig485 58039 0 + 58350 I e oryLat2.scaffold1367 20439 0 - 36351 I e tetNig2.chr8 5998087 0 + 10512681 I a score=-83452.000000 s hg19.chrUn_gl000223 93946 9 + 180455 T-------TA--------------TGAAAA-- s panTro2.chr12 219176 9 - 135371336 T-------TA--------------TGAAAA-- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1959 9 - 4218 T-------TA--------------TGAAAA-- i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258457 9 - 136387465 T-------TA--------------TGAAAA-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230436 9 - 134511895 T-------TA--------------TGAAAA-- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10795 19 + 14835 T-------TACA----TAGACTACTGAATA-- i micMur1.scaffold_19586 C 0 C 0 s tupBel1.scaffold_103331.1-57811 39779 3 - 57811 T-------TA---------------------- i tupBel1.scaffold_103331.1-57811 C 0 I 88 s cavPor3.scaffold_248 419115 2 - 667635 T-------T----------------------- i cavPor3.scaffold_248 C 0 n 0 s oryCun2.chrUn0106 694906 21 + 1032594 T-------T--AGAGACAGACCACTGAAAA-- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991647 16 - 76506943 TTATTGAATA--------------AGTAAA-- i bosTau4.chr17 C 0 I 65 s equCab2.chr8 64166440 9 - 94057673 T-------TA--------------CATAGA-- i equCab2.chr8 C 0 I 79 s felCat3.scaffold_141205 2505 9 - 2858 T-------TA--------------CGTAGA-- i felCat3.scaffold_141205 C 0 N 0 s canFam2.chr26 3212422 8 + 42029645 --------TA--------------CATAGA-- i canFam2.chr26 C 0 I 73 s myoLuc1.scaffold_130229 7948 9 - 12560 T-------TG--------------CGTAGA-- i myoLuc1.scaffold_130229 C 0 I 29 s loxAfr3.scaffold_113 118731 9 - 3408981 T-------TC--------------TGTAGA-- i loxAfr3.scaffold_113 C 0 I 88 s choHof1.scaffold_177942 1582 9 - 3798 T-------TT--------------TATGGA-- i choHof1.scaffold_177942 C 0 I 75 s dasNov2.scaffold_7587 79029 9 + 154172 T-------CA--------------GGAAGG-- i dasNov2.scaffold_7587 C 0 I 85 s xenTro2.scaffold_677 213522 9 + 553670 G-------TT--------------TGAACA-- i xenTro2.scaffold_677 C 0 C 0 s fr2.chrUn 75555684 2 + 400509343 ----------------------------GA-- i fr2.chrUn I 10 I 10 s oryLat2.chr17 11135904 2 + 31848461 ----------------------------ga-- i oryLat2.chr17 I 43914 I 4 s petMar1.Contig5115 12454 9 + 23967 -----------------------TTGTAAAAA i petMar1.Contig5115 T 1509 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e danRer6.chr4 43819163 0 - 71658100 C e gasAcu1.chrXX 2374538 0 + 19732071 C e tetNig2.chr8 5998087 0 + 10512681 I a score=-144086.000000 s hg19.chrUn_gl000223 93955 68 + 180455 AGAA---------------------------------------------------A------------------------------TCAAAAG------------------------------------------ATAATTAGC----------------------------AT-------------TTAA--------------------------TATGGAAAATACTGGGG--------GATATTATTCCACAAACTATCAA--A s panTro2.chr12 219185 68 - 135371336 AGAA---------------------------------------------------A------------------------------TCAAAAG------------------------------------------ATAATTAGC----------------------------AT-------------TTAA--------------------------TATGGAAAATACTGGGG--------GATATTATTCCACAAACTATCAA--A i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 1968 68 - 4218 AGAA---------------------------------------------------A------------------------------TCAAAAG------------------------------------------ATAATTAGC----------------------------AT-------------TTAA--------------------------TATGGAAAATACTGGGG--------GATATTATTCCACAAACTATCAA--A i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258466 68 - 136387465 AGAA---------------------------------------------------A------------------------------TCAAAAG------------------------------------------ACAATTAGC----------------------------AT-------------TTAA--------------------------TATGGAAAATACTGGGG--------GATATTATTCCACAAACTATCAA--A i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230445 63 - 134511895 AG--------------------------------------------------------------------------------------AAAAG------------------------------------------ACAATTAGC----------------------------AT-------------TTAA--------------------------TATGGAAAATACTGGGG--------GATATTATTCCACAAACTATCAA--A i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10814 137 + 14835 AGTA---------------------------------------------------AACTTGGAGTGAGAACTGCATCTTTTCATT-TTATAAGCCACATTATTTTAGT-TATATTGCTAATAAATAGCAATGTTAATATTTAGC----------------------------AT-------------TTAA--------------------------CATGGAGAATA-TGGAG--------GATGTTATTCCACAAACTAACAA--A i micMur1.scaffold_19586 C 0 C 0 s tupBel1.scaffold_103331.1-57811 39870 73 - 57811 AGAA---------------------------------------------------A------------------------------TAAAGAG-----------------------------------GATGCTGATACTTAGC----------------------------AT-------------TTAA--------------------------TATGAAGAATACTGGGG--------CATGTCATTCCACAAACT--CAA--A i tupBel1.scaffold_103331.1-57811 I 88 C 0 s oryCun2.chrUn0106 694927 137 + 1032594 AGCT---------------------------------------------------CACTGCCTTGGGGACCTGAATCTTTCAGGTATTTTAAGTCACATTATTTTAGTATATTGCTAAGAAAGATAATGCTG---ATACTTAGT----------------------------AT-------------TTAA--------------------------TATGAAGAATACTGGGA--------GATGTTATGACACAAACCACCAA--A i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29991728 76 - 76506943 AGAA---------------------------------------------------A------------------------------TAAAGAG---------------------------------ACAATACTGATACTTAGC----------------------------AT-------------TTAA--------------------------TATAAAGAATATTGGAA--------GATGTTATTCCACAAATTATCAA--- i bosTau4.chr17 I 65 C 0 s equCab2.chr8 64166528 79 - 94057673 GGAA---------------------------------------------------A------------------------------TGAAGAG---------------------------------ACAATACTGATATTTAGC----------------------------AT-------------TTAA--------------------------TATGGAGAATATTAGGG--------GATGTTATTCCACAAACTATCAAATA i equCab2.chr8 I 79 C 0 s canFam2.chr26 3212503 79 + 42029645 AGAA---------------------------------------------------A------------------------------TAAAGAG---------------------------------ACAAAACTGATACTTAGC----------------------------AT-------------TTAA--------------------------TATGGAGAATATTAGGA--------AATGTTATTCCACAAACTACCAAATA i canFam2.chr26 I 73 C 0 s myoLuc1.scaffold_130229 7986 124 - 12560 AGAACCGTACCTTTTCATTTATTAAAAGCCACATTATATTAGCTATATTGCTAAGA------------------------------AATAGAG---------------------------------ACAATACTGATAGTT-------------------------------AT-------------TTAA--------------------------CATGAAGAACACTGGGG--------GATGTTATTCCACAAACTATTAA--- i myoLuc1.scaffold_130229 I 29 C 0 s loxAfr3.scaffold_113 118828 76 - 3408981 AGAA---------------------------------------------------A------------------------------TAAAAAG---------------------------------GCAATGCTGATATTTAGC----------------------------AT-------------TTAA--------------------------TATAGACAACGTTGGTG--------GATGTTATTCCACAAACTATCAA--- i loxAfr3.scaffold_113 I 88 C 0 s choHof1.scaffold_177942 1666 79 - 3798 AGAA---------------------------------------------------A------------------------------TAAAGAG---------------------------------ATGATGCTGCTATTTCAC----------------------------AC-------------ATAA--------------------------TATGAAGAATACTGGGG--------GATGTTATTCCACAAACTATTAAATA i choHof1.scaffold_177942 I 75 C 0 s dasNov2.scaffold_7587 79123 74 + 154172 ---A---------------------------------------------------A------------------------------TAAAAAG---------------------------------ATGATGCTGGTATTTTGT----------------------------AT-------------TTAC--------------------------TGTGGAGAATACTGGAA--------GATGTTATTCCATTAACTATCAA--A i dasNov2.scaffold_7587 I 85 C 0 s xenTro2.scaffold_677 213531 92 + 553670 ------------------------------------------------------------------------------------------------------------------------------ACATTTCCCACATTCAGA----------------------------AC-------------ATAAAAATGGTTTCTCCCCTGTGTGGGCTCTATAATGAATATTAAGG-------TGGGATTGCTTTGAAAAACATTTT--C i xenTro2.scaffold_677 C 0 C 0 s fr2.chrUn 75555696 81 + 400509343 -------------------------------------------------------------------------------------------------------------------------------CATGACCGTAACTCGATGGGATCTGCTGACCGTAGCATTGAATATGT-------------TTGG--------------------------CTATTTAATTACTACAA--------ATTGCATT-------ACGTC------ i fr2.chrUn I 10 I 7 s gasAcu1.chrXX 2374538 57 + 19732071 -----------------------------------------------------------------------------------------------------------------------------------------AATCAATTTAA---------------------------------------TTTG--------------------------CAATAGAATTTCCAAGATTGATTTTATTTTTTTTAG---ATCAAT------ i gasAcu1.chrXX C 0 I 10 s oryLat2.chr17 11135910 65 + 31848461 ---------------------------------------------------------------------------------------------------------------------------------tgaattaaaatgaattaaa---------------attaaa---at-------------tttg--------------------------ctacacatttaccaggg--------accttttttaa---aacaaa------ i oryLat2.chr17 I 4 I 31 s danRer6.chr4 43819163 59 - 71658100 ----------------------------------------------------------------------------------------------------------------------------------------------------------gatctggtcatgaaa---at------------atttg--------------------------tactaaccatactgcac--------atttttattaacttaacaat------ i danRer6.chr4 C 0 I 6 s petMar1.Contig5115 12463 56 + 23967 ---------------------------------------------------------------------------------------------------------------------------------ACCAACAAATTGAGC----------------------------ATTTGCAAGTCATGGTTAA--------------------------TATTGACATTTCCAGGT--------GATAT--------------------- i petMar1.Contig5115 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e tetNig2.chr8 5998087 0 + 10512681 I e cavPor3.scaffold_248 419117 0 - 667635 I a score=-49452.000000 s hg19.chrUn_gl000223 94023 32 + 180455 TATA-TATA--------TAGATAGATAGA----ACAAGTTACA--TT s danRer6.chr4 43819228 29 - 71658100 tttc-tgct---------------gcccagtgtgaaagctatt--tt i danRer6.chr4 I 6 I 12 s oryLat2.chr17 11136006 25 + 31848461 atta-agtg---------------acata----aaaagctgtg--tt i oryLat2.chr17 I 31 C 0 s gasAcu1.chrXX 2374605 28 + 19732071 AACA-AGGG---------------AAACA-TTTGCAGGATATA--TT i gasAcu1.chrXX I 10 n 10 s fr2.chrUn 75555784 20 + 400509343 AATA-TGTG------------CAGAAGca----tcaa---------- i fr2.chrUn I 7 C 0 s tetNig2.chr18 155213 24 - 11077504 AAGA-CGTG------------TGTACCAA----ACAAGGTG------ i tetNig2.chr18 n 0 C 0 s xenTro2.scaffold_677 213623 25 + 553670 CACA-TTCG-----------GAACATGAA----AATGGTTT------ i xenTro2.scaffold_677 C 0 I 28 s dasNov2.scaffold_7587 79197 20 + 154172 TACG-CATG------------------------TAAAGTTACA--TT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_177942 1745 20 - 3798 TACG-TATA------------------------AAAAGCTACA--TT i choHof1.scaffold_177942 C 0 C 0 s loxAfr3.scaffold_113 118904 17 - 3408981 ---A-TATA------------------------AGAACTTACG--TT i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_130229 8110 17 - 12560 ---G-TATA------------------------ACAAGTTACA--TT i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3212582 20 + 42029645 TATG-TGTA------------------------ACAAGTTACA--TT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64166607 20 - 94057673 TATG-TATA------------------------ACAAGTTATA--TT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29991804 17 - 76506943 ---A-TATA------------------------ACAAGTTACA--TT i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 695064 21 + 1032594 TATA-TAGT-------------------A----ATAAATTACA--TT i oryCun2.chrUn0106 C 0 C 0 s tupBel1.scaffold_103331.1-57811 39943 35 - 57811 CATATTATA--------AAGGTACACTGA----AAAAACTCCAACTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 10951 24 + 14835 TATG-TATA----------------TAGA----ACAAGTTACA--TT i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230508 40 - 134511895 TATA-TATATATATAGTTAGATAGACAGA----ACAAGTTACa--tt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258534 32 - 136387465 TATA-TATA--------TAGATAGATAGA----ACAAGTTACA--TT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2036 28 - 4218 TATA-TAT------------ATAGATAGA----ACAAGTTACA--TT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219253 32 - 135371336 TATA-TATA--------TAGATAGATAGA----ACAAGTTACA--TT i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e petMar1.Contig5115 12519 0 + 23967 C e cavPor3.scaffold_248 419117 0 - 667635 I a score=14104.000000 s hg19.chrUn_gl000223 94055 18 + 180455 AAAAAATAA-AGTACA--AAA s danRer6.chr4 43819269 13 - 71658100 --gatcaaa-aattca----- i danRer6.chr4 I 12 I 123 s oryLat2.chr17 11136031 16 + 31848461 --gaagtat-aaaatg--aaa i oryLat2.chr17 C 0 I 18 s fr2.chrUn 75555804 16 + 400509343 --aataaac-aatatt--tcC i fr2.chrUn C 0 N 0 s tetNig2.chr18 155237 16 - 11077504 --AAAAAGT-AATTTT--TAT i tetNig2.chr18 C 0 I 22 s xenTro2.scaffold_677 213676 13 + 553670 TTAAGGTGG-GATT------- i xenTro2.scaffold_677 I 28 C 0 s dasNov2.scaffold_7587 79217 18 + 154172 CAAAAATAA-AATATC--AAA i dasNov2.scaffold_7587 C 0 I 1 s choHof1.scaffold_177942 1765 13 - 3798 CA-----AA-AATATC--AAA i choHof1.scaffold_177942 C 0 I 1 s loxAfr3.scaffold_113 118921 16 - 3408981 AAA----AA-AATACCAAAAA i loxAfr3.scaffold_113 C 0 I 1 s myoLuc1.scaffold_130229 8127 18 - 12560 GAAAATAAA-AGAACA--AAA i myoLuc1.scaffold_130229 C 0 I 180 s canFam2.chr26 3212602 18 + 42029645 AAAAAATAA-AATACT--GAA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64166627 18 - 94057673 AAAAAATAA-AATCCC--AAA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29991821 18 - 76506943 TAAAAATAA-AATACC--AAA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 695085 18 + 1032594 TAAGAATAA-AATACC--AAC i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 274928 19 + 667635 ATAAAATAACAATCCC--AAA i cavPor3.scaffold_248 I 43780 C 0 s tupBel1.scaffold_103331.1-57811 39978 5 - 57811 AAAAA---------------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 10975 18 + 14835 AAAAAATAA-AATACC--AAA i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230548 18 - 134511895 aaaatataa-aatact--aaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258566 18 - 136387465 AAAAAATAA-AGTACG--AAA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2064 18 - 4218 AAAAAATAA-AGTACA--AAA i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219285 18 - 135371336 AAAAAATAA-AGTACA--AAA i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e petMar1.Contig5115 12519 0 + 23967 C e gasAcu1.chrXX 2374633 10 + 19732071 I a score=25406.000000 s hg19.chrUn_gl000223 94073 37 + 180455 -----AATTTTAGAAATACTA------TTCAGTGTTAACTCAGGAAA-G s panTro2.chr12 219303 37 - 135371336 -----AATTTTAGAAATACTA------TTCAGTGTTAACTCAGGAAA-G i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2082 37 - 4218 -----AATTTTAGAAATACTA------TTCAGTGTTAACTCAGGGAA-G i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258584 37 - 136387465 -----AATTTTAGAAATGCTA------TTCAGTGTTAACTCAGGGAA-G i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230566 37 - 134511895 -----aattttaGAAATACTT------TTCAGTGTTAACTTAGGGAA-G i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 10993 36 + 14835 -----ATTTTTAAAAATGCTT------TTCAATGTTAACTCA-GAAA-G i micMur1.scaffold_19586 C 0 C 0 s tupBel1.scaffold_103331.1-57811 39983 30 - 57811 -----------AAAAACACTA------TTCAGTGTTAACTCA-GGAA-A i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 274947 36 + 667635 -----ATTT-TAAAAATATTA------TTCAGTATCAATTAGGGAAA-G i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 695103 37 + 1032594 -----ATTTAAAAAAATAATA------TTCAGTGTTAACTCAGGAAA-G i oryCun2.chrUn0106 C 0 C 0 s myoLuc1.scaffold_130229 8325 36 - 12560 -----AGTTTTAAAAATGCTA------TTCAGTGCT-GTTCATGAAA-G i myoLuc1.scaffold_130229 I 180 C 0 s canFam2.chr26 3212620 34 + 42029645 -----ATTTTTAAAAATGCTA------TTCAG--TT-ACTCAGGAAA-G i canFam2.chr26 C 0 C 0 s equCab2.chr8 64166645 36 - 94057673 -----ATTTTAAAAAATGCTA------TCCAGTATT-ACTCAGGAAA-G i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29991839 36 - 76506943 -----ATTAAAAAAAATGCTA------TGCAGTATT-ACTCAGGAAA-G i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 118938 36 - 3408981 -----AATTTTTTAAATGTTA------TTTAGTGTT-ACACAGGAAA-G i loxAfr3.scaffold_113 I 1 I 2 s choHof1.scaffold_177942 1779 36 - 3798 -----ATTTTTAAAAAAGCTA------TTTCATGTT-ACTCAGGAAA-G i choHof1.scaffold_177942 I 1 C 0 s dasNov2.scaffold_7587 79236 35 + 154172 -----AATGTTAAAAAGG-TA------CTTAATGTT-ACTCAGGAAA-G i dasNov2.scaffold_7587 I 1 C 0 s xenTro2.scaffold_677 213689 32 + 553670 -----GCTTTGAAAAACATTT------CCCAC-----ATTCAGAACA-T i xenTro2.scaffold_677 C 0 C 0 s danRer6.chr4 43819405 14 - 71658100 ------------------------------attattaactgaag----- i danRer6.chr4 I 123 C 0 s oryLat2.chr17 11136065 31 + 31848461 -----------------actttttcattttaattttgagtcatttcat- i oryLat2.chr17 I 18 I 39 s fr2.chrUn 117671886 20 - 400509343 ---------------------------tctattattaatttatttaa-- i fr2.chrUn N 0 I 19 s tetNig2.chr18 155275 19 - 11077504 ---------------------------TCTAATCACGATTCACTAA--- i tetNig2.chr18 I 22 I 19 s petMar1.Contig5115 12519 18 + 23967 CATAcagtcttaaaaaaa------------------------------- i petMar1.Contig5115 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e gasAcu1.chrXX 2374633 10 + 19732071 I a score=-423588.000000 s hg19.chrUn_gl000223 94110 100 + 180455 TCACATTAAA------TATCCAT--T-----------------AAC-TTTAAGAC-T--------------CTGTT----------------------CCC------------------TGCGTTTTTCCTGAACA--------TTATTT-ACATATTTTTA------AAA---------------------------AAAC--A-----A----CTTTATACTCC---------ACCAT--G----AA s panTro2.chr12 219340 100 - 135371336 TCACATTAAA------TATCCGT--T-----------------AAC-TTTAAGAA-T--------------CTGTT----------------------CCC------------------GGCGTTTTTCCTGAACA--------TTATTT-ACATATTTTTA------AAA---------------------------AAAC--A-----A----CTTTATACTCC---------ACCAT--G----AA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2119 100 - 4218 TCACATTAAA------TATCCGT--T-----------------AAC-TTTAAGAA-T--------------CTGTT----------------------CCC------------------TGCGTTTTTCCTGAACA--------TTATTT-ACATATTTTAA------AAA---------------------------AAAA--A-----A----CTTTATACTCC---------ACCAT--G----AA i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 258621 100 - 136387465 TCACATTAAA------TATCCCT--T-----------------AAC-TTTAAGAA-T--------------CTGTT----------------------CCC------------------TGCGTTTTTCCTGAACA--------TTATTT-ACATATTTTTT------AAA---------------------------AAAC--A-----A----CTTTATACTCC---------ACCAT--G----AA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 230603 106 - 134511895 TCATATGAAA------TATCCCT--T-----------------AACTTTTAAGAA-T--------------CTGTT----------------------CCC------------------T--GTTTTTCCTGAACATTACt---ttattt-atatatttttt------aaa---------------------------aaaC--A-----A----CTTTATACTCC---------ACCAT--G--AAAA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 11029 114 + 14835 TCACACTAAA------TATCACT--T-----------------AAC-TTTCAGAA-T--------------ATGTT----------------------CCT------------------TGAATTTTTCCTGACCATCATT---TTATTT-ACATGTTAAAATAAAACAAA---------------------------AAAC--A-----A----CTTGATACTTC---------AACAA--G-AAAAA i micMur1.scaffold_19586 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40013 110 - 57811 CCACACTAAA------TATCCCT--T-----------------AAC-TTTCAGAA-C--------------CCGCT----------------------CCT------------------TGTTGTTTTCCTGATCATTACC---TTATTT-ACATATAAAAC------AAA---------------------------ACATAAA-----A----CGTTATACTTT---------ATCAT--G-AAGAA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 274983 86 + 667635 TCGTA-CAAT------AATTTCT--T-----------------AAT-TTTCAGAA-T--------------GAGTT----------------------CCT------------------TGTGGTTT------------------TATTT-ACATATTT---------AAA---------------------------CAAA--A-----A----ACTCATACATC---------ATAGA--A----AA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 695140 145 + 1032594 TC----TAAA------TATCCTT--T-----------------AAC-TTTCAAAA-TATGAGGGCTTTAAAAAGTT----------------------CATGGAAAAGATAATTAAAGATGTAGTTT-----------------CCATGT-ACTTTTTG---------AAAGCTCTTGTATACTCTTATGCCTTTCTTGACA--A-----T----TATTTTACATT---------ATAAAACA----AA i oryCun2.chrUn0106 C 0 C 0 s myoLuc1.scaffold_130229 8361 96 - 12560 TCACCCTAAA------TATTCCT--T-----------------AAC-CTACAGAA-T--------------ATATC----------------------CCT------------------TA------TCTTTAC----ATT---TTATTT-ACATATTAAAAT-----AAA---------------------------A-----A-----C----CTTTATACTCC---------ACCAT--G-TAAAA i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3212654 112 + 42029645 TCACACTAAA------TATGTTTGAG-----------------AAC-CTTGAGAA-T--------------ATGTT----------------------TCT------------------TGCTGTTTTCCTGACTGCTGCT---TTATTT-ACATTTTAAAAT-----AAA---------------------------ACAC--A-----A----CTTTATACTCC---------ATCAT--GAAAAAA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64166681 109 - 94057673 TCATACTAAA------TATCCCT--T-----------------AAC-CTTCAGGA-T--------------ATGTT----------------------CCT------------------TGCTGTTTTCCTGACCATTACT---TTATTT-ACATATTAAAAT-----AAA---------------------------AAGC--A-----A----CTTTATACTCT---------ACCAT--G-AAAAA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29991875 100 - 76506943 TCACACTCCA------TGCCCCT--G-----------------AAC-CTTCAAAA-T--------------ACGTT----------------------CTT------------------TGCTATTTTCCTA------------TTAGTT-ACATATTAAAAA-----ATA---------------------------AAAC--AAAACTA----CTTTATCCTCC---------ACCAA--G------ i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 118976 105 - 3408981 TCAAACAAAA------TATCCCT--T-----------------AAT-TTTCAGAA-T--------------ATATT----------------------CCT------------------TGCTGTTTTCCTGATCATTACT---TTGTTT-ACACATTAAAA------AAG---------------------------GAAC--A-----A----TTTTATACTCT---------ACTAT--G----AA i loxAfr3.scaffold_113 I 2 I 4 s choHof1.scaffold_177942 1815 65 - 3798 TCAC--TAAA------TATCCC--------------------------------------------------------------------------------------------------------------ATCACTGCT---ATATTT-AAACCT---AA------AAC---------------------------AAAA--A-----A----TTTCATACTCT---------ATCAT--G----AA i choHof1.scaffold_177942 C 0 I 1 s dasNov2.scaffold_7587 79271 102 + 154172 TCACATTAAA------TACCCCA--T-----------------AAT-TTTCAGAT-T--------------ATGTT----------------------CCT------------------CGATGTTTCCTTGATTATTCCT---ACATTT-GCATTT---AA------AAC---------------------------CAAA--A-----A----TTTCATACTCT---------ACCAT--A----Aa i dasNov2.scaffold_7587 C 0 I 1424 s xenTro2.scaffold_677 213721 108 + 553670 GAAAATGGTT------TCTCCCC--TGTGTGGGTTTTATAATGAAT-TTTAAGGT-T--------------AGATT----------------------GCT----------------------------GTGAAAA--------GCATTTCCCACATTCAGA------ACA---------------------------AGAA--A-----ATGGCTTCTCCCCTTT---------GTGA---------- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr18 155313 74 - 11077504 tgattaaaaa------tat------t-----------------ACT-TTACAGTG-T--------------GTATC----------------------TTT------------------AT-----------------------TATTTT-Gat--------------aaa---------------------------aagt--a-----t----tttaataGGTCTTGACCTTG-------------- i tetNig2.chr18 I 19 C 0 s fr2.chrUn 117671925 59 - 400509343 TGATACAAAG---------------------------------ACT-CT---GTGTT--------------GCATT----------------------TTC------------------GT-----------------------TCCATA-GTA--------------ACA---------------------------AAGT--T-----T----ATTATCAGGAC----------------------- i fr2.chrUn I 19 C 0 s gasAcu1.chrXIII 16794238 100 + 20083130 TCACATAAAA------GGT------C-----------------ACA-TTCCTGAG-A--------------GACTCACCCGACGCAGGCTCAACAATTTTC------------------CCCTG--------ACAATGTTCACTCAACTT-GCA--------------AAA---------------------------AAGA--T-----T----TTTCAAAGA------------------------- i gasAcu1.chrXIII I 5078 C 0 s oryLat2.chr17 11136135 87 + 31848461 ccatattaat------tgt------caaattag----------aca-tttctaaa-t--------------gaattatgcaacaca------------ttt------------------accag--------agaa--------catctt-g----------------aaa---------------------------atga--a-----a----tgtcaaatacc----------------------- i oryLat2.chr17 I 39 C 0 s danRer6.chr4 43819419 93 - 71658100 tgaccttaaattagcattt------t-----------------gca-ctttaaaaat--------------ttatt----------------------ttt------------------gttcattcaatt-aaga--------tatttt-ATA--------------AAA---------------------------TTAA--A-----A----AATGAtatatc--ggtatcg-------------- i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 12537 73 + 23967 ------------------------------------------acat-tttatata-t--------------acaag----------------------CAC------------------TTCTATACATC--------------atgctt-atatatattta------aaa---------------------------taaa--a-----a----tgcttcaCTTG---------CCTT---------- i petMar1.Contig5115 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I a score=-95723.000000 s hg19.chrUn_gl000223 94210 27 + 180455 GTCAACTGTTCATAC------CAAG-----ATTTT--------ATT---- s choHof1.scaffold_177942 1881 28 - 3798 GTCTACCATTTATAAT-----GGAG-----ATTTT--------CTG---- i choHof1.scaffold_177942 I 1 C 0 s loxAfr3.scaffold_113 119085 28 - 3408981 ATCTATCACTTATAAT-----TGAT-----ATTTT--------ATT---- i loxAfr3.scaffold_113 I 4 C 0 s bosTau4.chr17 29991975 9 - 76506943 ------------------------G-----ACTTT--------CTT---- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166790 28 - 94057673 GTCTACGATTTGTAAC-----TGAG-----ATTTT--------CTT---- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3212766 28 + 42029645 ATCTACCATTTAAAGT-----TGAG-----GTTTT--------CTT---- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8457 25 - 12560 GTCTACCATTTATAAT-----T--------ATTTT--------CTT---- i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695285 45 + 1032594 AACAATCTTACACTTTCTC-ATGAAAGTCTATTTTTAATCACTAAC---- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 275069 37 + 667635 GTCAATTGTTCATCATATC--TGAG-----ATTTTTA--CACCATT---- i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40123 25 - 57811 GTCTATTTTTAATGG--------AG-----ATTTT--------ATT---- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11143 28 + 14835 GCTTACTATTTATAAT-----TGAG-----ATTTT--------CTT---- i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230709 27 - 134511895 GTCAACTGTTCATAA------TGAG-----ATTTT--------ATT---- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258721 27 - 136387465 GTCAACTGTTCATAA------CAAG-----ATTTT--------ATT---- i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2219 27 - 4218 GTCAACTGTTCATAA------CAAG-----ATTTT--------ATT---- i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219440 27 - 135371336 GTCAACTGTTCATAC------CAAG-----ATTTT--------ATT---- i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 213829 33 + 553670 GTCTTTTGATGACGCTCTAGATGAG-----ATTTT--------CTT---- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr18 155387 26 - 11077504 GTCGATATTTTAT-C------TGTA-----GGTTT--------AAA---- i tetNig2.chr18 C 0 I 21 s fr2.chrUn 117671984 3 - 400509343 -------------------------------------------AAA---- i fr2.chrUn C 0 I 18 s gasAcu1.chrXIII 16794338 17 + 20083130 --------TTTAA--------AGTG-----ATTAC--------AGT---- i gasAcu1.chrXIII C 0 I 3 s oryLat2.chr17 11136222 20 + 31848461 ------attttaa-t------ttta-----atttt--------aat---- i oryLat2.chr17 C 0 I 450 s danRer6.chr4 43819512 27 - 71658100 gttcgtactgaaagc------tgca-----atatc--------ggt---- i danRer6.chr4 C 0 I 7 s petMar1.Contig5115 12610 17 + 23967 --------------------GTCTG-----GTGTT--------CTTCGTT i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I a score=-225929.000000 s hg19.chrUn_gl000223 94237 148 + 180455 T------TACAAAAACA-----CAGCTTCAA----------ATCTGGAATGTGACTTTC--CA-------------TGGAAC---------ACACTTT-CAA-----------TGGG-------AAAATGCTTCCTTAATTTATTCAACTTATAA-----GGTGT--TCCTAG-TGT-----AAATTCT---CTGAAT-----CTTCATG--------A-TGA-TACT----ACA---------------ACATTTG--ATACA s choHof1.scaffold_177942 1909 148 - 3798 CACCCTTTATAAAAACA-----TACCTTCAA----------ATCTGGAATGTGACTTTT---------------------------------TCCATT-TTA-----------TGGG-------GAAATGCTTTTCTGGTTCATTCAATTTATAA-----GGTGT--TTTCAATTAT-----AAATTCT---CTGAATTAAATCTTCAAA--------A-TGA-TG-------CT---------------ACATTTG--GAACA i choHof1.scaffold_177942 C 0 C 0 s loxAfr3.scaffold_113 119113 156 - 3408981 GACCC--TACAAAAACA-----TAGCTTCAA----------ATCTGGAATGTGACTTTC--CA-------------TGTAAC---------ACACTTT-CTG-----------TGGG-------AAAATGCTTTTCCCATTCATTAAATTT-TAA-----GGTGC--TCTCAG-GAT-----GAATCTT---ATGAATTAAGTCTTCATA--------A-TGA-TGCT----ACT---------------ACACTTG--GTACA i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29991984 149 - 76506943 CA-----CTCAAAAAC-------AGCATCAA----------ATCTGGAACATGACTCCC--CA-------------TGTAAC---------ACATCTT-CTG-----------TGGA-------AAAGTGCTTTCCTGATTTATTAAATTCATA--------TGG--ACTTAA-TAT-----GCATTTC---CCAAATTAAATCTTCATA--------A-TTA-TGCT----ACT---------------GTATATG--ATACC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166818 150 - 94057673 CA-----CTCTAGAAC-------AGCTTCAA----------ATCTGGAATGTGACTCTC--CA-------------CATAAC---------ACATTTT-CTA-----------TGGG-------AAAATGCTTTCCCGATTTATTAAATTTATAA-----GGTGT--TCTCTG-TAT-----GAATTCT---CCAAATTAAATCTTCATA--------G-TAA-TGCT----ACT---------------ACATTTG----ATA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3212794 152 + 42029645 CA-----CTCTAAAACA-----TAGTTTCAA----------ATCTGGAATGTGACTCTCCACA-------------CATAAC---------ACATTTC-ATA-----------TGGG-------AAAATGCTTTCCTGATTTATTAAATTTGGAA-----A--GC--TTTAGA-TAT-----GAATTCT---CCAGATTTTACCTTTATA--------A-TGA-TGCT----ACC---------------TCATTTC----ATA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8482 154 - 12560 CA-----CTCTAAAACA-----TAGCTTCAA----------ATTTGGAATGTGACTCTC--CA-------------TTTAAC---------ACATTTT-CTA-----------TGAG-------AAAATGCTTTCCCAATTTAATAAATTTATAA-----AGTGT--TCTCAA-TAT-----GAATTCT---TAAAATTACATCTTCATA--------A-TGA-TGCC----AGC---------------ACATTTG--ATATA i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695330 143 + 1032594 T------TATAA--AAA-----CAGCTTCAA----------ATCTGGAATGTGACTTTC--CA-------------TGTAAC---------ACACCTG-CTA-----------TGAG-------GAAATGCTTTTCTGATTTACTAAATTTATAA-----GGTGT--TCTAAG-TGC-----GAATTCT---CCAAAT-----CTTCATG--------A-----TACT----ACT---------------GCATTTG--GTATA i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 275106 130 + 667635 T------TATAAATAAA-----AAGTTTCAA----------ATCTGGAATGTGGCTTTC--CA-------------CGAAAC---------ATTCTTT-CCA-----------C-AG-------GAAATGC-TTCCGGATTTGGGAAA-------------------CCTCAG-CAT-----GAG--CA---CCCAGT-----CTTCACA--------A---G-GACA----CCT---------------CCGCTCG--GTGCA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40148 139 - 57811 T------TATAAAAAT-------AGCTTC-A----------ATCTGGAATGTGATTTTC--C-----------------AAC---------ACACATT-CTA-----------TAGG-------AAAATGCTT--TTGACTAGTTAAATTTGAAA-----GATAT--TCTCAG-TAT-----GGATTCT---CCAAAT-----CTCCATA--------A-TGA-TGCT----ACT---------------ACATCTG--GTACA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11171 140 + 14835 C------------ACTT-----CAGCTTTAA----------ATCTGGAATGTGACTTTC--AA-------------TGTAAA---------ACA--TT-CTA-----------TGGG-------GAAATGCTTTCTTGATTTGTTAAATTTATAA-----GGTGT--TCTCAG-CAT-----GAATTCT---CTGAAT-----GTTCATA--------A-TGA-TGCT----ACT---------------ACATTTG--GTACA i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230736 148 - 134511895 T------TACAAAAACA-----CAGCTTCAA----------ATCTGGAATGTGACTTTC--CA-------------TGGAAC---------ACACTTT-CAA-----------CGGG-------AAAATGCTTCCCTAATTTATTGGACTTATAA-----GGTGT--TCCTCG-TGT-----AAATTCT---CTGAAT-----CTTCATG--------A-TGA-TACT----ACA---------------ACATCTG--ATACA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258748 148 - 136387465 T------TACAAAAACA-----CAGCTTCAA----------ATCTGGAATGTGACTTTC--CA-------------TGGAAC---------ACATTTT-CAA-----------TGGG-------AAAATGCTTCCTTAATTTATTCAACTTATAA-----GGTGT--TCCTAG-TGT-----AAATTCT---CTGAAT-----CTTCATG--------A-TGA-TACT----ACA---------------ACATTTG--ATACA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2246 148 - 4218 T------TACAAAAACA-----CAGCTTTAA----------ATCTGGAATGTGACTTTC--CA-------------TGGAAC---------ACACTTT-CAA-----------TGGG-------AAAATGCTTCCTTAATTTATTCAACTTATAA-----GGTGT--TCCTAG-TGT-----AAATTCT---CTGAAT-----CTTCATG--------A-TGA-TACT----ACA---------------ACATTTG--ATACA i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219467 146 - 135371336 T------TACAAAAACA-----CAGCTTCAA----------ATCTGGAATGTGACTTTC--CA-------------TGGAAC---------ACACTTT-CAA-----------TGGG-------AAAATGCTTCCTTAATTTATTCAACTTATAA-----GGTGT--TCCTAG-TGT-----AAATTCT---CTGAAT-----CTTCATG--------A-TGA-TACT----ACA---------------ACATTTG--ATA-- i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 213862 185 + 553670 A---------AAAAGCATTTCCCACATTCAG----------AACAAGAAAATGGTTTCT--CCCCTGTGTGGGTTTTATAAT---------GAATTTT-CAGGTCGGATTGGCCTGA-------AAAACATTTCCCACATTCAGAACATGAAAAT-----GGTTTCACCCCTG-TGT-----GGATTCTATAATGAAT-----TTTCAGG--------AGTGATTGCTTTGAAAA---------------ACATTTA--CCACA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr18 155434 109 - 11077504 ----------------------tagacagaa----------aacaca---------gag--aa-------------gaaagC---------AGATATT-TAT-----------GCAG-------CAAATGT----------TGAAAGACGGATGA-----aataa--tttgac-t-------------t---tt---t-----tttcaaa--------g-ttt-taat----ata-------aaaa------atttG--ATGCA i tetNig2.chr18 I 21 I 33 s fr2.chrUn 117672005 134 - 400509343 -----------------------------ag----------aacatc---------tgg--ca-------------ggaatcta-aaattaaaatttt-tAT-----------TTGGACTCTTCTCActga----------gaagaagctgcagc-----aatat--CTGAAC-T-------------T---TCTTGT-----TTGCAAATCTGGATGG-TTT-CGCT----CCT-------GTGGGTGCTCATGTG--CTGCA i fr2.chrUn I 18 N 0 s gasAcu1.chrXIII 16794358 111 + 20083130 ----------------------TTACCGCAA----------AACATG---------TCA--CT-------------AACAGC---ACGTTA--------CAT-----------GAAG-------TAAAAAA----------CAGGCAAATTTAAC-----AATAC--CTTC---------------------TTTTGT-----TGATAAA--------G-AAG-TACT----ATA--------TAAATAATAATCT---TTGAA i gasAcu1.chrXIII I 3 I 41 s oryLat2.chr17 11136692 152 + 31848461 ----------------------TTACAAGAATGAGACCTTTaacctg--tgtgagttct--ca-------------tgtgac---aCGTCAAATTTCT-CAA-----------GGAG-------ACAAAAACT------TTCTTACAAATGTCACACGGAAAGAT--CTTCCC-A-------------G---CTGTGT--------------------G-AGT-TCTT----ATGTGGACTTTTAAGTCACTACCTGTAGTGAA i oryLat2.chr17 I 450 I 32 s danRer6.chr4 43819546 68 - 71658100 ----------------------------------------------------------------------------------cagaagttaaaatgttgtat-----------cggg-------aca--------------tccctaCATGAGAA-----AATGT--TTTGTA-T-------------G---TTTCAT--------------------G-TAA-TGTG------------------------------------ i danRer6.chr4 I 7 C 0 s petMar1.Contig5115 12627 113 + 23967 ------------------TTCTCATCTTCCC----------ACATCGGA------------CA-------------AGCTAC---------TTGGATT-TCC-----------TGTG-------AATATGA------AATTTCTTTACGTCCAAC-----GTTAC--CTTCAT-CATACTGAAAGTTCT---CT---------TTTTGGA--------T-GGA-CATA----AC------------------------------ i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I a score=-263756.000000 s hg19.chrUn_gl000223 94385 56 + 180455 TTTA--------------TTGCTCCAC------ATTCCTTCCATTAT----------------------------TTTC----------------------------------------ATCTACAAAGATT-TG--------T---------AAC----TT-ATTT s choHof1.scaffold_177942 2057 57 - 3798 T--A--------------CTACTCCTT------ATTCCTTCAATTAT----------------------------TCTT----------------------------------------GTTTACAAAGATT-TGTA------T---------GAC----ATTACTT i choHof1.scaffold_177942 C 0 C 0 s loxAfr3.scaffold_113 119269 45 - 3408981 T-----------------TTACTGCTC------AATTATTC----------------------------------TCTT----------------------------------------ATCTACAGAGATT-TGGA------T---------G---------ACTT i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29992133 60 - 76506943 ATTA--------------CTGCTCTTT------ATTCCTTCAACCAT----------------------------TCTCCT--------------------------------------GTGTATAAAGATT-TGCA------T---------GAC----TT-ATTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64166968 58 - 94057673 GTCA--------------TTGCTCCTC------ATTCCTTCAATTAT----------------------------TCTC----------------------------------------GTCTATAAAGATT-TGTG------T---------GAC----TT-CCTT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3212946 55 + 42029645 GTTA--------------CTGCTCCTC------ATTCCCTCA---GG----------------------------TCTC----------------------------------------GTCCACAGAGACT-CATA------G---------GAC----TT-ATTT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8636 57 - 12560 GTTC--------------CTGCTC--A------ATTTCTTCAGTTAT----------------------------TCTC----------------------------------------ATCTATCAAGTTTGTATA------T---------GAC----TT-ATTT i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695473 54 + 1032594 TTTA--------------TCATTCCTC------ATTCCTTCAAATAT----------------------------T-------------------------------------------GTCTA-AAAGATT-TGTA------T---------GAC----TT-GTTT i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 275236 52 + 667635 TTCA----------CTTCTCATTTGTC------ATTC-------TCC----------------------------T-------------------------------------------CTCTGCGAAAGTT-TGCG------T---------GCC----TG-GCCT i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40287 58 - 57811 -TTA--------------CTGCTCTGC------ATTCCTACAGTTAC----------------------------TGTCTT--------------------------------------GTCCAC-AGGATC-TGGA------T---------GAC----TC-AGTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11311 58 + 14835 TTTA--------------CTGCTCCTC------ATTCCTTCAATTAT----------------------------TCTCTT--------------------------------------GTCTACAAAGATT-TG--------T---------GAC----TT-ATTT i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230884 56 - 134511895 CTTA--------------TTGCTCCGC------ATTCCTTCCACTAT----------------------------TTTC----------------------------------------ATCTACAAAGATT-TG--------C---------AAC----TT-ATTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258896 56 - 136387465 TTTA--------------TTGCTCCTC------ATTCCTTCCATTAT----------------------------TTTC----------------------------------------ATCTACAAATATC-TG--------T---------AAC----TT-ATTT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2394 56 - 4218 TTTA--------------TTGCTCCAC------ATTCCTTCCATTAT----------------------------TTTC----------------------------------------ATCTACAAAGATT-TG--------T---------AAC----TT-ATTT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219613 56 - 135371336 TTTA--------------TTGCTCCAC------ATTCCTTCCGTTAT----------------------------TTTC----------------------------------------ATCTACAAATATT-TG--------T---------AAC----TT-ATTT i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 214047 150 + 553670 TTCAGAACAAGAAAATGGTTTCTCCCCTGTATGAGTCCTTTGATGATGATCAAGCTCAGATTCGTTTGAAAAACATTTCCTACATTCAGAACATGAAAATGGTGTCTCCCTGGTGTGGGATCTATAATGAAT-TTTA------A---------GGCGGGAAT-GCTC i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr18 155576 45 - 11077504 ---------------------CTTATA------ACACATGAG-----------------------------------------------------------------------------AAGTTGACTAATA-TCAG------CTACAA----AAC----CG---TA i tetNig2.chr18 I 33 C 0 s fr2.chrUn 102972288 43 - 400509343 ---------------------TGTCTT------GTACATAAA------------------------------------t----------------------------------------atgtttgtgtatt-taa---------atga----aAC----TT---CT i fr2.chrUn N 0 C 0 s gasAcu1.chrXIII 16794510 52 + 20083130 ---------------------TTTCAC------ACTTGTGGA-TTTT----------------------------TCTC----------------------------------------ATGTGGAC--AAT-TAAG------TTACTAG---AAC----TT---CT i gasAcu1.chrXIII I 41 C 0 s oryLat2.chr17 11136876 57 + 31848461 ---------------------TTtcac------ctgtgtgaa----t----------------------------tctc----------------------------------------atgtgaac--ATT-TAAGGAAGAATTATGAGCA-AAT----TT---CT i oryLat2.chr17 I 32 C 0 s danRer6.chr4 43819614 8 - 71658100 ------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAC----TT----- i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 12740 37 + 23967 ------------------CTGCACAGC------ATC------AACAT----------------------------TTTC----------------------------------------AC---------tt-tg--------t---------aat----tt-gttt i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I a score=-243660.000000 s hg19.chrUn_gl000223 94441 57 + 180455 CTGAAAG-CTTTTAC--ACTCAT---CCC-AA--ATATG--GTT----------GGTCTCTCTC--CTCTCTGA--TTT--TTG s choHof1.scaffold_177942 2114 56 - 3798 CTGAAAG-CTTTTGCACACTCAT---TCT-AA--ACATG--ACT----------G-----TCTC--CTGTATGACTTAT--CTA i choHof1.scaffold_177942 C 0 C 0 s loxAfr3.scaffold_113 119314 43 - 3408981 TTGAAAG-CTTTTATACACACAT---TCC-AA--A--------------------------------TAGATAACTCAT--CTG i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29992193 61 - 76506943 CTGAAAG-CTTTTGCATATTCAT---TCC-AA--ATATG--ATT----------GGTCTCTCTC--CCACATGACTAAT--TTG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167026 59 - 94057673 CTGAAAG-CTTTTGCCCATTCAT---TCC-AA--GT--G--ACT----------GGTCTCTCTC--CTCTATGACTTAT--TTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213001 40 + 42029645 CTGAAAG-CTTTTGCCCCTTCAT---TCC-AT--ATA-G--GAC----------GGTCTC------------------------ i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8693 61 - 12560 CTAAAAT-CTTTTGCACAGTCAT---TAC-AA--ATATG--ATT----------GGTTTCTCTC--CTATAGGACTTAT--TTG i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695527 55 + 1032594 CTGAAAG-CTTTTGCAAACTCAC---TCC-GA--GTATT--ATT----------CGTCTTACA--------AGG--TTTACGTG i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 275288 51 + 667635 CTGGCAC-TGTTCACACACTCAT---CCCAAA--GGACT--GCT----------CTCTCCCCT--------TGG--TTT----- i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40345 62 - 57811 CTAAAAGAATTGCAT--ACTCAA---TCC-AAATATATG--ATT----------GATCTGTCTC--CTCTATGACTTAT--TTG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11369 61 + 14835 CTGAAAG-CTTTTGCAAACTCAC---TCC-AA--ATATG--ATT----------GGTTTCTCTC--CTATATGACTTTT--TTG i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230940 57 - 134511895 CTGAAAG-CTTTTAC--ACTCAT---CCC-AA--ATATG--ATT----------GGTCTCTCTC--CTCTCTGA--TTT--TTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 258952 57 - 136387465 CTGAAAG-CTTTTAC--ACTCAT---CCC-AA--ATATG--GTT----------GGTCTCTCTC--CTCTCTGA--TTT--TTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2450 57 - 4218 CTGAAAG-CTTTTAC--ACTCAT---CCC-AA--ATATG--GTT----------GGTCTCTCTC--CTCTCTGA--TTT--TTG i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219669 53 - 135371336 CTGAAAG-CTTTTAC--ACTCAT---CCC-AA--ACATG--GTT----------GGTCTCTCTC--CTCTCT------T--TTG i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 214197 60 + 553670 TGAAAAA-CATTTCC---CACAT---TCA-GA--ACAAGAAAAT----------GGTTTCTCCC--CTGTGTGGGTTCT--ATA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr18 155621 23 - 11077504 CAGGAAG-AC------AATT------GC------ACGTC--TTT---------------------------------------- i tetNig2.chr18 C 0 I 44 s fr2.chrUn 102972331 29 - 400509343 GCGGAAG-ATTT---GAAAT------GCA-TA--ATGTC--ATT---------------------------------------- i fr2.chrUn C 0 I 50 s gasAcu1.chrXIII 16794562 55 + 20083130 GAAACAT-CTTTCACATATTTTGCA-GCA-AT--ATGGC--TTCTCCCCGGTATGGATTCTT---------------------- i gasAcu1.chrXIII C 0 I 7237 s oryLat2.chr17 11136933 44 + 31848461 ---------TTTCACAAACTTT----ACA-AT--ACGGC--TTTTCACCTGTGTGTATTCTC---------------------- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43819622 47 - 71658100 ---------TTTGTCCAATTCTGTAGACA-CA--GCAGA--TTT-CAGATGTACAGTTTCTC---------------------- i danRer6.chr4 C 0 I 4 s petMar1.Contig40203 8031 48 + 12200 ----------CTGGT--TCTTGT---TTc-ag--gaggg--atg----------ggctcattgcagcactttgacttt------ i petMar1.Contig40203 n 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I a score=-198059.000000 s hg19.chrUn_gl000223 94498 57 + 180455 ACATG-------------------AGTGT-AATTTTAGGG------------CCTCCTGCTTGTAAATCC-----TGTCTATATT------ATCCGA-AG------------------------------T s choHof1.scaffold_177942 2170 67 - 3798 ACATA-------------------AGTGT-CTTTTTAGAA-----CCTCCTGCCTCCTGCTTGTATATCC-----TGTCTATATGA---TCATCTGA-AG------------------------------T i choHof1.scaffold_177942 C 0 C 0 s loxAfr3.scaffold_113 119357 60 - 3408981 ATATG-------------------AGCGT-ATTTTCAGGA------------CCTCCTGCTTGTATATCC-----TGTCTATATGA---CCATCTGA-AG------------------------------T i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 29992254 60 - 76506943 ATTAG-------------------AATGT-ACTTTTAGGT------------GTTCCTACTTATATATCC-----TGTTTCTATTA---TCATCTGA-AT------------------------------T i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167085 60 - 94057673 ACATG-------------------AGTGT-ATTCCTAGGA------------CTTCCTGCTTACACATCC-----TGTCTACGCTA---TCATCGCA-AG------------------------------T i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213041 57 + 42029645 ---TA-------------------ACTCT-GTTTTTAGGA------------CTTCCTGCTTGTGCATCC-----CATCTATATCA---TCACCTAA-AG------------------------------T i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8754 58 - 12560 ATATG-------------------AGTGA-ATTTTTAGGA------------CTGCCTGCTTATATAT-------TGTCTATATTA---TCATCTGA-AA------------------------------T i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695582 40 + 1032594 TGATC-------------------AGTGT-ATGTTTA-TA------------CATCCTACTGTTG---------------------------TCTGG-AA------------------------------T i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 275339 49 + 667635 ---TT-------------------TGTCT-ATTTTTAGCA------------CATCCTGCCTGTG---CC-----TG--TGCAGC------CTCTGA-GG------------------------------C i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40407 55 - 57811 ACATG-------------------AGTGC-A--TTTATAA------------TCTCTTA-TTATAAATCC-----TGTGTATACT------ATCAACTGG------------------------------T i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11430 60 + 14835 ACATG-------------------AATGC-ATTTTTAGTA------------CCTCCTGTTTATAAACCC-----TGTCTATATTA---TCATCTGA-AA------------------------------T i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 230997 57 - 134511895 ACATG-------------------AGTGT-AGTTTTAGGG------------CCTCCTGCTTGTAAATCC-----TGTCTATATT------ATCCGA-AG------------------------------T i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259009 57 - 136387465 ACATG-------------------AGTGT-AGTTTTAGGG------------CCTCCTGCTTGTAAATCC-----TGTCTATATT------ATCCGA-AG------------------------------T i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2507 57 - 4218 ACATG-------------------AGTGT-AATTTTAGGG------------CCTCCTGCTTGTAAATCC-----TATCTATATT------ATCCAA-AG------------------------------T i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219722 57 - 135371336 ACATG-------------------AGTGT-AATTTTAGGG------------CCTCCTGCTTGTAAATCC-----TGTCTATATT------ATCCGA-AG------------------------------T i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 214257 38 + 553670 ATA---------------------------AATTTTAAGG------------TGGGATTGCTGTGAAAAA-----CATTTCC------------------------------------------------- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chr18 155688 124 - 11077504 CCGTTTGATCCTCCATGATGGTACGGCAC-AACTGGACTATTTGTTATTTACATGACTGTGTGTGATGTA-----AACCTGTGTGGACCTTCCTCAG-GTGGACAGCCAAGTCGCCACTATATCTGAAGGC i tetNig2.chr18 I 44 C 0 s fr2.chrUn 102972410 56 - 400509343 ACATT-------------------GACac-caataaaaca------------attaaaacacgTGATGTT-----TTCTAGT-------TTCTTCGA-CT------------------------------C i fr2.chrUn I 50 C 0 s gasAcu1.chrXIII 16801854 50 + 20083130 TTGTG-------------------GATTC-TTCTCATGTG---------CACATTTAAGTTACTAGAA---------------------CTTCTGAA-AC------------------------------C i gasAcu1.chrXIII I 7237 C 0 s oryLat2.chr17 11136977 35 + 31848461 ATGTG-------------------GA-------------------------CATTTAAGGCTCTGCTG---------------------TCCATGAA-AC------------------------------C i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43819673 48 - 71658100 GTGTG-------------------AATTCTCTTTTGTGTG------------ATTCAGATGTGTTAAC---------------------TGATTAAA-CC------------------------------T i danRer6.chr4 I 4 C 0 s petMar1.Contig40203 8079 62 + 12200 -caca-------------------agt-c-gaTTTCAGAC------------CACACTCCTTGGGGTTCTTCTGATGCCTGTGTG----TTATCTGG-TG------------------------------T i petMar1.Contig40203 C 0 n 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I a score=-46510.000000 s hg19.chrUn_gl000223 94555 19 + 180455 CTCCTGAACATC----------------AGTTTCT s choHof1.scaffold_177942 2237 16 - 3798 ---CTGAGGATC----------------AGTTTTT i choHof1.scaffold_177942 C 0 I 18 s loxAfr3.scaffold_113 119417 19 - 3408981 CTCCTGAGGATC----------------AGCTTCT i loxAfr3.scaffold_113 C 0 I 1162 s bosTau4.chr17 29992314 35 - 76506943 CTCTTGAGGATCAACTTCTGTCTGAGTATGCATCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167145 33 - 94057673 CTCCTGAGGATCAACCTCTG--TGAGAATGTTTCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213098 33 + 42029645 CTCCTGAGGATCCATGTCGG--TGAGAAAGTTCTT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8812 33 - 12560 CTCCTAAGGACCAAGTTTTA--TTAGAATGTTTCT i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695622 33 + 1032594 CTCCTGAGTATCAGCTTCCG--TGTGAAAGCTTCT i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 275388 33 + 667635 CTCTGGGATGCCCACTCCTG--TGAGAAGGCTTCC i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40462 19 - 57811 ATCCTGAGCCTC----------------AACTTCT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11490 33 + 14835 CTCCTGAGCATCAGCCTCTG--TGATAAAGCTTCT i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 231054 19 - 134511895 CTCCTGAACATC----------------AGTTTCT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259066 19 - 136387465 CTCCTGAACATC----------------AGTTTCT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2564 19 - 4218 CTCCTGAACATC----------------AGTTTCT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219779 17 - 135371336 CTCCTGAACAT------------------GTTTCT i panTro2.chr12 C 0 C 0 s tetNig2.chr18 155812 5 - 11077504 CTTCC------------------------------ i tetNig2.chr18 C 0 C 0 s fr2.chrUn 102972466 5 - 400509343 CTTCT------------------------------ i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16801904 5 + 20083130 GAATT------------------------------ i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137012 5 + 31848461 CTTTT------------------------------ i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43819721 5 - 71658100 CTCGT------------------------------ i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e petMar1.Contig40203 8141 0 + 12200 I e xenTro2.scaffold_677 214295 0 + 553670 C a score=254937.000000 s hg19.chrUn_gl000223 94574 96 + 180455 CACAT---------------TGCATCATTCTGA-------------------TTTCTCATT---T---ATGAGTCTTCCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACATTCAGAGCATTTCC s danRer6.chr4 43819726 94 - 71658100 -----------CACAGTGTGAACACTTGTATGG-------------------TCTCTCAAG---T---GTAAAACGTCTGGTG------------CAGTTTCAATTTTGTAATAAAAGTCTTCTCACACTCAAAGCACAATT i danRer6.chr4 C 0 C 0 s oryLat2.chr17 11137017 102 + 31848461 -----------GACATAGTTCACAGGTAAAATG-------------------CCTTAaacc---t---gtgtgagttctcatat----gACAGGTCAAATTTCTAAAGGAGGCAAAAACTTTCTTACACATTTTACACGGAA i oryLat2.chr17 C 0 C 0 s gasAcu1.chrXIII 16801909 102 + 20083130 -----------TGCATATTTTACAGGAATATGG-------------------CTTCTCGCC---A---GTATGGATTCTTATAT----GAGACTTTAAATTTGATGTTCGTGAGAAGGTTTTCCCACAGGTGATGCAAGAAT i gasAcu1.chrXIII C 0 C 0 s fr2.chrUn 102972471 85 - 400509343 -------------------CTGCTCATTTATGG-------------------AGTTTCATCAAAA---GCTTTGAATCCCATT-----------ACAGGCCCC-TTTTGACCAGGACTGCACACCGACTACT----GAACGT i fr2.chrUn C 0 I 1 s tetNig2.chr18 155817 102 - 11077504 -----------TGCAGGCGCTGCACACGTAcgg-------------------cttctcccc---c---gtgtggaTTCTCATGT----GGTGGAACAAATTCCGCTTTGAACTCAAATTCTTGCCACATATTTTGCAAACAT i tetNig2.chr18 C 0 I 3002 s xenTro2.scaffold_677 214295 102 + 553670 -----------------------CACATTCAGAACAAGAAAATGGTT-----TCTCCCCTG---T---GTGAGTCCTTTGATGACGAACAAACTCAGATTCTTTTGA------AAAACATTTCCCACATTCAAAGCAAGGAA i xenTro2.scaffold_677 C 0 C 0 s choHof1.scaffold_177942 2271 96 - 3798 ---------TTCA------CTTCTTCATTCTGA-------------------TTCCTCACT---T---GTGAGTTTTCCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACATTCGGAGCATTTCC i choHof1.scaffold_177942 I 18 C 0 s bosTau4.chr17 29992349 96 - 76506943 AA-ATT--------------TATTCTGTTCTGA-------------------TTTCTCACT---T---ATGAGTTTTTCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACACTCAGAGCATTTCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167178 97 - 94057673 GGCATC--------------TACTTCATTCTCA-------------------TTTCTCACT---G---GTGAGTTTTTCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACACTCAGAGCACTTCC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213131 97 + 42029645 Aacatc--------------tacttccttctaa-------------------tgtttcact---t---gtgagtttttcgatgtatacgaagccctgaattccaaca------gaaagatttcccacattcagagcatttcc i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 8845 95 - 12560 AACATC--------------TGCTTCATTCTAA---------------------TTTCACT---T---GTGAGTTTTTCTATGTATACGGAGCCCTGAATTCCAACA------GAAGGATTTCCCGCACTCAGAGCATTTCC i myoLuc1.scaffold_130229 C 0 C 0 s oryCun2.chrUn0106 695655 68 + 1032594 AATAGTCAC-----------CTCAT---TCTGA-------------------TTTTTCACT---T---GTGAGTTTTCCGATGTATGCGAAGTCCTGAATTCCAACA----------------------------------- i oryCun2.chrUn0106 C 0 I 1020 s cavPor3.scaffold_248 275421 100 + 667635 AACGCTCAC-----------TTCATCACTCGCA-------------------TCTCACCAT---T---GTGAGTTTTTCTGTGGATGCGAAGCCCTGAGTTCCAGCA------GAAAGACTTTCCACACTCAAAGCACTTCC i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40481 100 - 57811 GTAAGAAAGT---------ATCTATCATTCTTA---------------------TCTCACT---T---GTGAGTTTTCCGATGTATGCGAAGCCCTGAATTCCAACA------AAAGCATTTTCCACATTCAGAGCATTTCC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_19586 11523 100 + 14835 CACATTTA-----------CTTCATCACTTTGA-------------------TTTCTCATT---T---GTGAGTTTTCCGATGTACACGAAGGCCTGAATTCCAACA------GAAGGATTTTCCACATTCAGAGCATTTCC i micMur1.scaffold_19586 C 0 C 0 s rheMac2.chr11 231073 96 - 134511895 CACAT---------------TGCATCATTCCGA-------------------TTTCTCATT---T---ATGAGTCTTGCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACATTCAGAGCACTTCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259085 96 - 136387465 CACAT---------------TGCATCACTCTGA-------------------TTTCTCATT---T---ATGAGTCTTCCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACATTCAGAGCATTTCC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2583 96 - 4218 CACAT---------------TGCATCATTCTGA-------------------TTTCTCATT---T---ATGAGTCTTCCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACATTCAGAGCATTTCC i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219796 96 - 135371336 CACAT---------------TGCATCATTCTGA-------------------TTTCTCATT---T---ATGAGTCTTCCGATGTATACGAAGCCCTGAATTCCAACA------GAAGGATTTCCCACATTCAGAGCATTTCC i panTro2.chr12 C 0 C 0 s petMar1.Contig5115 12777 91 + 23967 ------------------------------------------tgttCACATAAATCTCCTT---TAAGATGAGTCTTCTGATGAGCTTTAAGATTGTAATTTAGCGA------AAAGCTTTTTCCACAAATATTACATGCAT i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I a score=320639.000000 s hg19.chrUn_gl000223 94670 52 + 180455 ATGGTTTCTCTCCGGTGTGAACTCTC-------------TGATGTTCACTGAG-AGATGACTTC-TG s panTro2.chr12 219892 52 - 135371336 ATGGTTTCTCTCCGGTGTGAACTCTT-------------TGATGTTCACTGAG-AGATGACTTC-TG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2679 52 - 4218 ATGGTTTCTCTCCGGTGTGAACTCTC-------------TGATGTTCACTGAG-AGATGACTTC-TG i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259181 52 - 136387465 ATGGTTTCTCTCCGGTGTGAACTCTC-------------TGATGTTCACTGAG-AGATGACTTC-TG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231169 52 - 134511895 ACGGTTTCTCTCCAGTGTGAACTCTC-------------TGATGCTCACTGAG-AGATGACTTC-TG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_19586 11623 52 + 14835 ATGGTTTCTCTCCAGTGTGAACTCTT-------------CGATGTTCACCAAG-AGATGACTTC-TG i micMur1.scaffold_19586 C 0 n 0 s tupBel1.scaffold_103331.1-57811 40581 52 - 57811 ACGGTTTCTCTCCTGTGTGGACTCTC-------------TGATGTTCACTGAG-AGACGACTTC-TG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 275521 52 + 667635 ATGGCTTCTCTCCTGTATGCACTCTC-------------TGGTGTTCACTGAG-GGAGGATTTC-TG i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 8940 52 - 12560 ATGGTTTCTCTCCTGTATGAACTCTT-------------TGATGCTCACTGAG-AGATGACTTC-TG i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213228 52 + 42029645 atggtttttctccagtgtgaactctc-------------tgatgctcactgag-ggacgacttc-tg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167275 52 - 94057673 ACGGCTTCTCTCCCGTGTGAACTCTC-------------TGGTGTTCACTGAG-AGATGACTTC-TG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992445 52 - 76506943 ATGGTTTCTCTCCTGTATGAACTCTT-------------TGGTGTTCACTGAG-AGATGACTTT-TG i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_177942 2367 51 - 3798 ATGGTTTCTCTCCTGTATG-ACTCTC-------------TGATGTTCACTAAG-GGATGACTTC-TG i choHof1.scaffold_177942 C 0 C 0 s xenTro2.scaffold_677 214397 52 + 553670 ATGGTTGCACCCCCATGTGGGTTCTA-------------TGATGAGTTTTAAG-GAGTGACTGG-TT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483858 52 - 107808587 ATGGTCTCTCCCCCGTGTGACTTCTC-------------ATGTGGAGAAATAATGAAGAACTTC-T- i tetNig2.chrUn_random T 10552 C 0 s fr2.chrUn 102972557 63 - 400509343 --GATTTATTTCCGATCCGTCTTCTCCGTACTCTCATAAAAGAAGCGAAAGATTACAGTCAACC-T- i fr2.chrUn I 1 C 0 s gasAcu1.chrXIII 16802011 52 + 20083130 ATGGCTTTTCCCCAGTATGATTTCTT-------------GTATGATACTTCAA-TCGTGATTTCAG- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137119 52 + 31848461 AAAGCTTCTCAGTGGTGTGAGTTCCT-------------ATGTGGGCTTTTAAGTCACTACCTC-T- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43819820 52 - 71658100 ACTCTTTCACACCAGTGTGGATCTTC-------------ATGTGTTCATTAAGGTTTGCTGATC-G- i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 12868 52 + 23967 ATGGCTTCTCTCCGGTGTGTATCCGC-------------TGGTGGGTTTTCAA-GTGAGGCTTT-TG i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I a score=414996.000000 s hg19.chrUn_gl000223 94722 69 + 180455 AGTGAAGGCTTT-TCCACATTCACTGCATTTAAAAGGTTTCTCTCCCGAATGAGTTTTCTGGTGT-AT--CTG s rheMac2.chr11 231221 69 - 134511895 AGTGAAGGCTTT-TCCACATTCACTGCATTTAAAAGGTTTCTCTCCCGAATGAGTTTTCTGGTGT-AT--TTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259233 69 - 136387465 AGTGAAGGCTTT-TCCACATTCACTGCATTTAAAAGGTTTCTCTCCCGAATGAGTTTTCTGGTGT-AT--CTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2731 69 - 4218 AGTGAAGGCTTT-TCCACATTCACTGCATTTAAAAGGTTTCTCTCCCGAATGAGTTTTCTGGTGT-AT--CTG i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 219944 69 - 135371336 AGTGAAGGCTTT-TCCACATTCACTGCATTTAAAAGGTTTCTCTCCCGAATGAGTTTTCTGGTGT-AT--CTG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40633 69 - 57811 AGTAAAGGCTTT-CCCACATTCACTGCATTTGAAAGGCTTCTCTCCTGAATGAGTTTTCTGGTGT-AT--CTG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 275573 69 + 667635 AGTAAAAGCTTT-CCCACACTCACTGCACTTGAAAGGTTTCTCTCCTGAATGGGTTTTCTGATGA-AT--CTG i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 8992 69 - 12560 AGTGAAGGCTTT-CCCACACTCACTGCATTTGAAAGGCTTCTCTCCTGAGTGAGTTTTCTGGTGT-AT--CTG i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213280 69 + 42029645 agtgaaggcctt-tccacattcaccacacttaaaaggtttctctcctgagtgagttttctggtgt-at--ctg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167327 69 - 94057673 GGTGAAGGCTTT-CCCGCACTCACTGCATTTGAAAGGTTTCTCTCCGGAATGAGTCTTCTGGTGT-AT--CTG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992497 69 - 76506943 AGTAAATGCTTT-CCCGCACTCACTGCATTTAAACGGTTTTTCTCCTGAATGAGTTTTCTGGTGT-AT--CTG i bosTau4.chr17 C 0 C 0 s choHof1.scaffold_177942 2418 52 - 3798 AGTGAAAGCTTTCCCCACATTCACTACATTTAAAAGGTTTCTCTCCTGAATG--------------------- i choHof1.scaffold_177942 C 0 M 610 s xenTro2.scaffold_677 214449 70 + 553670 TGTGAAACATTT-CTCACATTCAGAACATGAAAATGGTTGCACCCCTGTGTGGGTCCTTTGATGAGAA--ATA i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483910 69 - 107808587 TTTGAAagcttt-cccacatgttttacacaagtaTGGTTTCTCATCCGTATGGACCCTCAGGTGC-TT--GGT i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102972620 51 - 400509343 CTTGATTGTATT-------------------GTTTAGCTACACAATAATATG--CCCTAacgtta-ataaaat i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16802063 69 + 20083130 AGGGAATGTTTT-CCCACAGGTGGTGCAAGAATATGGCTTCTCCCCACTATGAATTCTTATATGA-GA--CTT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137171 69 + 31848461 AGtgaaactttt-tccacatactTCACAAGTGAAAGGCCTCTCACccgtgtgaattctcatgtgg-aC--ATT i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43819872 69 - 71658100 GTTAAAACTCTT-CTTACACTGAGTTCATGTGAATGGTTTCTCCCCAGTGTGAGTCTTCATGCGT-TT--ATT i danRer6.chr4 C 0 I 207 s petMar1.Contig5115 12920 64 + 23967 CGCAAAACCCCT-TCCACAGTCTTTGCATATGAAAGGTTTTTCTCCAGTATGTGTCTTTTGATGA-------- i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I a score=119693.000000 s hg19.chrUn_gl000223 94791 32 + 180455 AAGTGATGCCTTCCTAGGGTAGGCTTTTTCAC s bosTau4.chr17 29992566 32 - 76506943 AAGTGATGCCTTTCTGGGATAGGCTTTTTCAC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167396 32 - 94057673 AAGCGACGCCTTCCTGGGATATGCTTTCTCGC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213349 32 + 42029645 aagtgacgccttcctgggataggctttctcac i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9061 32 - 12560 GAGTGATGCCTTCCTAGGATAGGCTTTCTCAC i myoLuc1.scaffold_130229 C 0 C 0 s cavPor3.scaffold_248 275642 32 + 667635 AAGGGATGCCTTCCTTGGATAGGCCTTCTCAC i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40702 32 - 57811 AAGAGAAGCCTTCCTAGGATACGCTTTTTCAC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 220013 32 - 135371336 AAGTGATGCCTTCCTAGGGTAGGCTTTTTCAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2800 32 - 4218 AAGTGATGCCTTCCTAGGGTAGGCTTTTTCAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259302 32 - 136387465 AAGTGATGCCTTCCTAGGGTAGGCTTTTTCAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231290 32 - 134511895 AAGTGATGCCTTCCGAGGGTAGGCTTTTTCAC i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_677 214519 31 + 553670 AGGTTATATCGTTTTGAAAAACA-TTTCCCAC i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51483979 32 - 107808587 TAGTTTGGAGTTTTGATGGAActctttcccac i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102972671 18 - 400509343 aaatattgcctttttttG-------------- i fr2.chrUn C 0 I 105 s gasAcu1.chrXIII 16802132 32 + 20083130 CAAATGTGATGTCTGAGTGAACGTTTTCCCAC i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137240 32 + 31848461 AAAGGAAGACTtataagaaaactgtttttcac i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820148 32 - 71658100 aagtgatgcgatttcgcaggtcagagtccgtc i danRer6.chr4 I 207 I 2 s petMar1.Contig5115 12984 2 + 23967 ------------------------------AC i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=189144.000000 s hg19.chrUn_gl000223 94823 37 + 180455 ATTCATTGCATTCATAGGGCTTCTCAGTTGAATGAGT s bosTau4.chr17 29992598 37 - 76506943 ATTCGCTACATTCATAGGGCTTTTCTGTTGAGTGAGT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167428 37 - 94057673 ACTCACTGCACTCATAGGGCTTCTCTGTCGAGTGGGT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213381 37 + 42029645 attcgctgcattcatatggcttctctgttgagtgagt i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9093 37 - 12560 ATTCACTGCATTCATAGGGCTTCTCTGTTGAGTGAGT i myoLuc1.scaffold_130229 C 0 C 0 s cavPor3.scaffold_248 275674 37 + 667635 ATTCACTGCACTCATAGGGCTTCTCTGTTGAGTGGGT i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40734 37 - 57811 ATTCATTGCATTCATAGGGCTTCTCTGTTGAGTGAGT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 220045 37 - 135371336 ATTCGTTGCATTCATAGGGCTTCTCAGTTGAATGAGT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2832 37 - 4218 ATTCATTGCATTCATAGGGCTTCTCAGTTGAATGAGT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259334 37 - 136387465 ATTCATTGCATTCATAGGGCTTCTCAGCTGAATGAGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231322 37 - 134511895 ATTCATTGCATTCATAGGGTTTCTCCGTTGAATGAGT i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_677 214550 37 + 553670 ATTCAGAACATGAAAATGGTTTCTCCCCTGTGTGAGT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51484011 37 - 107808587 atgttttacagaTGTAGAGCTTTTCACCTGTGTGAAT i tetNig2.chrUn_random C 0 I 4511 s fr2.chrUn 102972794 35 - 400509343 attatttac--atttatgacTTCTCACTTGCATGAAG i fr2.chrUn I 105 C 0 s gasAcu1.chrXIII 16802164 37 + 20083130 AAGTAATGCAAGAATATGGCCTTTCCCCAGTGTGAAT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137272 37 + 31848461 aGACCTCACAAGCATAAGGcctttcacctgtgtgagt i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820182 35 - 71658100 -agtttCGTA-GTTCATGGTTTCTCTCCGTTGTGGCT i danRer6.chr4 I 2 C 0 s petMar1.Contig5115 12986 10 + 23967 AGTCATGGCA--------------------------- i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_7587 79373 1424 + 154172 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=101120.000000 s hg19.chrUn_gl000223 94860 40 + 180455 TCTCTGATGTATAATCA-GCTGTGATTTTCCAC-AAAAGGCT s bosTau4.chr17 29992635 40 - 76506943 TCTTTGATGTATAATTA-GCTGTGACTTCCCAC-AAAAGGCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167465 40 - 94057673 TCTCTGATGTATAATTA-GCTGTGACTTCCCAC-AAAAGGCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213418 40 + 42029645 tctctggtgtatgatga-gctgggatttcccac-aaaaggct i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9130 40 - 12560 TCTTTGATGGATAATGA-GCTGTGACTTCCCAC-AAAAGGCT i myoLuc1.scaffold_130229 C 0 C 0 s cavPor3.scaffold_248 275711 40 + 667635 TCTCTGGTGGATGATCA-GCTGTGACTTCCCAC-AGAAGGCT i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40771 40 - 57811 TCTCTGATGTATGATTA-ACTGTGATTTCCCAC-AAAAGGCT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 220082 40 - 135371336 TCTCTGATGTATAATCA-GCTGTGATTTTCCAC-AAAAGGCT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2869 40 - 4218 TCTCTGATGTATAATCA-GCTGTGATTTTCCAC-AAAAGGCT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259371 40 - 136387465 TCTCTGATGTATGATCA-GCTGTGATTTTCCAC-AAAAGGCT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231359 40 - 134511895 CCTCTGATGTATAATCA-GCTGTGATTTTCCAC-AAAAGGCT i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_677 214587 40 + 553670 CCTTTGATGAGAAATAA-GGTTATATCGTTTTG-AAAAACAT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51488559 40 - 107808587 TCTCATGTGGAGCGTTAGCGTGTAACTGT-GCT-TGAACGCT i tetNig2.chrUn_random I 4511 C 0 s fr2.chrUn 102972829 40 - 400509343 TCTCATGTGTTGGGATAAATTTGAATTACAGCT-TAAAC-CT i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16802201 40 + 20083130 TCTTGTATGAAACGTCA-AATGTGATTTCAGAG-TGAATGTT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137309 40 + 31848461 CCTCATGTGACAGGTC--AATCTATTTGCATAGATGAAGGAT i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820217 40 - 71658100 TACCATGTG-TAGATTAAGGCATGATGATTGGC-TGAAAATC i danRer6.chr4 C 0 C 0 s dasNov2.scaffold_9718 90361 14 + 100754 -------------------------TTTCCCAC-AAAAGG-- i dasNov2.scaffold_9718 n 1424 C 0 s petMar1.Contig5115 12996 17 + 23967 -------------------CTGGAAT-----AT-GAAAAACT i petMar1.Contig5115 C 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=428600.000000 s hg19.chrUn_gl000223 94900 66 + 180455 CTCTCACACAAACTACATTCATAGGGTCTCTCTCCGGTGTGTGTTCTCCTATGTATAACAAGG----------------------------------------------------------------------TAT- s bosTau4.chr17 29992675 66 - 76506943 CTCTCACAGAAACTACATTCATAGGGTCTCTCTCCTGTGTGTGTTCGCCTGTGTATAACGAGG----------------------------------------------------------------------TAT- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64167505 66 - 94057673 CTCTCACAGAAGCTACATTCGTAGGGTCTCTCTCCTGTGTGCGTTCTCCTGTGTATCACGAGG----------------------------------------------------------------------TAG- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3213458 66 + 42029645 ctctcacagaaactacattcatagggtctttctcctgtgtgcgttctcctatgtatcacaagg----------------------------------------------------------------------tat- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9170 66 - 12560 CTCTCACAGAAACTACATTCATAGGGCCTCTCTCCTGTGTGTGTTCTCCTGTGTATAACGAGG----------------------------------------------------------------------TAT- i myoLuc1.scaffold_130229 C 0 C 0 s cavPor3.scaffold_248 275751 66 + 667635 CGTTCACACAAGCTGCACTCATAGGGCCTCTCCCCCGTGTGCGTCCGCCTGTGAATAACGAGG----------------------------------------------------------------------TAG- i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40811 66 - 57811 CTCTCACAGAAACTACACTCATAGGGTCTCTCTCCTGTGTGTGTTCTCCTATGTATAACAAGG----------------------------------------------------------------------TAA- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 220122 66 - 135371336 CTCTCACACAAACTACATTCATAGGGTCTCTCTCCGGTGTGTGTTCTCCTATGTATAACAAGG----------------------------------------------------------------------TAT- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2909 66 - 4218 CTCTCACACAAACTACATTCATAGGGTCTCTCTCCGGTGTGTGTTCTCCTATGTATAACAAGG----------------------------------------------------------------------TAT- i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259411 66 - 136387465 CTCTCACACAAACTACATTCATAGGGTCTCTCTCCGGTATGTGTTCTCCTATGTATAACAAGG----------------------------------------------------------------------TAT- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231399 66 - 134511895 CTCTCACACAAACTACATTCATAGGGTCTCTCTCCGGTGTGTGTTCTCCTATGGATAACAAGG----------------------------------------------------------------------TAT- i rheMac2.chr11 C 0 C 0 s xenTro2.scaffold_677 214627 66 + 553670 TTCCCACAATCAGAACAAGAAAAAAGTTTCTCTCTTTTGTGGGTTCTCTGGTGTTTATCAAAG----------------------------------------------------------------------TTG- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51488599 77 - 107808587 TTCCCACAGGTCTTACAGAAGTAGCGCTTCTCGCCCGTGTGTCTCCTCATGTGGACGCTCAGA-----------------------------------------------------------GCAGAACTCTGTCT- i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102972869 72 - 400509343 TTTCCACATACTTTGCAAATATAtggtttctcacctgtgtggacCCTCGCGTGG-----TATG-----------------------------------------------------------ATAGATTCCATTTT- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16802241 136 + 20083130 TTCCCACAGGTGTTGCAAGAAAACGGCCTTTCCCCAGTGTGAGTTTCCATGTGGAATTTTAAGCCATTACTAAATTTGAAATATTTTCCACATATTTGACAAGAAAATGGTTTCTCATCACTGTGGACTCTTTTAT- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137349 66 + 31848461 TTCTTACAAATGTCACAGGAATAAGGCCtctcacctgtgtgagttctcatgtgaatATTTAAG----------------------------------------------------------------------TGA- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820257 66 - 71658100 TTCCCACACTGAGTGCATGCGTATGGTTTCTCTCCAGTGTGTTTCCTCATGTGTCGATTAAGG----------------------------------------------------------------------TGT- i danRer6.chr4 C 0 C 0 s dasNov2.scaffold_9718 90375 64 + 100754 --TTCACAGCAACTACATTCATAGAGTCTTTCTGCTGTGTGTGTTCTCCTATGTACAAAGAGG----------------------------------------------------------------------TAT- i dasNov2.scaffold_9718 C 0 n 0 s petMar1.Contig11358 14212 66 + 15648 tttccacacacagtgcacttgaaggttttctctctcgtgtgtgttctctggtgg-cacTGAAG----------------------------------------------------------------------AATT i petMar1.Contig11358 n 0 C 0 e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=27134.000000 s hg19.chrUn_gl000223 94966 17 + 180455 GACTTGCTG--------------CTGAAAGC s rheMac2.chr11 231465 17 - 134511895 GACTTGCTA--------------CTGAAAGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259477 17 - 136387465 GACTTGCTG--------------CTGAAAGC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2975 17 - 4218 GACTTGCTG--------------CTGAAAGC i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220188 17 - 135371336 GACTTGCTG--------------CTGAAAGC i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40877 17 - 57811 GACTTGCTG--------------CTGAAGGC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 275817 17 + 667635 GACTTGCTG--------------CTGAAGGC i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9236 17 - 12560 GATTTGCTG--------------CTGAAAGC i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213524 17 + 42029645 gatttgctg--------------ctgaaagc i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167571 17 - 94057673 GACTTGCTG--------------CTGAAGGC i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992741 17 - 76506943 GATTTGCTG--------------CTGAAAGC i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 214693 17 + 553670 CTCTTATTA--------------CTAAAATG i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51488676 7 - 107808587 GAAGCTG------------------------ i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102972941 11 - 400509343 GAACTTAAA--------------------GC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16802377 31 + 20083130 GAAGCTCAAATGGTGATTTATCCATGAATCT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137415 17 + 31848461 GAAggttga--------------ataaaaca i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820323 17 - 71658100 GATGAGCAG--------------GTAAAACT i danRer6.chr4 C 0 C 0 s petMar1.Contig11358 14278 17 + 15648 GATGAatat--------------gcaaacgc i petMar1.Contig11358 C 0 I 60 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=203205.000000 s hg19.chrUn_gl000223 94983 27 + 180455 CTTCCCACATTCACTGCATCCATAGGG s rheMac2.chr11 231482 27 - 134511895 CTTCCCACATTCACTGCATCCATAGGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259494 27 - 136387465 CTTCCCACATTCACTGCATCCATAGGG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 2992 27 - 4218 CTTCCCACATTCACTGCATCCATAGGG i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220205 27 - 135371336 CTTCCCACATTCACTGCATCCATAGGG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40894 27 - 57811 CTTCCCACACTCACTGCACCCATAGGG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 275834 27 + 667635 CTTCCCACACTCACTGCACCCATAGGG i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9253 27 - 12560 CTTCCCACAGTCACTGCATCCATAGGG i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213541 27 + 42029645 cttcccacactcagtgcacccataggg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167588 27 - 94057673 CTTGCCACATTCACTGCACCCATAGGG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992758 27 - 76506943 CTTCCCGCACTCACTGCATCCATAAGG i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 214710 22 + 553670 TTTATGACACTCATTGCAGCTG----- i xenTro2.scaffold_677 C 0 I 6094 s tetNig2.chrUn_random 51488683 26 - 107808587 -TCCCCACATATTTTACAGACGTacgg i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102972952 27 - 400509343 TTTCCCACATATCTTGCAAATGTGGGG i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16802408 27 + 20083130 TTTCCCACAGGTGTTGCATACATATGG i gasAcu1.chrXIII C 0 I 2330 s oryLat2.chr17 11137432 27 + 31848461 tttttgacaaactttacaagaataagg i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820340 27 - 71658100 CTTCTCACACTCAGTGCATGTGAATGG i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13013 27 + 23967 CTTCCCACACTCTTTGCAAACATATGG i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e micMur1.scaffold_19586 11675 0 + 14835 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=277321.000000 s hg19.chrUn_gl000223 95010 33 + 180455 CTTCTCTCCTGCATGAGCTCTCAGATGTGCAGT s rheMac2.chr11 231509 33 - 134511895 CTTCTCTCCCGCGTGAGCTCTCAGATGTGCAGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259521 33 - 136387465 CTTCTCTCCTGCATGAGCTCTCAGATGTGCAGT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3019 33 - 4218 CTTCTCTCCTGCATGAGCTCTCAGATGTGCAGT i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220232 33 - 135371336 CTTCTCTCCTGCATGAGCTCTCAGATGTGCAGT i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40921 33 - 57811 TTTCTCTCCTGCATGAGCCCTCAGATGTGCAGT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 275861 33 + 667635 CTTCTCTCCTGCATGGGCTCGAAGGTGAGCAGA i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9280 33 - 12560 TTTCTCTCCTGCATGAGCTCTCAGATGTGCAGT i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213568 33 + 42029645 cttctcacctgcatgtgctctcagatgtgcggt i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167615 33 - 94057673 CTTCTCTCCCGCGTGAGCTCTCAGATGCGCAGT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992785 33 - 76506943 TTTCTCTCCTGCATGAGCTCTCAGATGTGCAGT i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 220826 33 + 553670 TTTTCCTCTTGTGTGATTTTGAAAGTGTGCATT i xenTro2.scaffold_677 I 6094 C 0 s micMur1.scaffold_67426 1 32 + 5244 -TTCTCTCCTGCGTGAGCTCTCAGATGTGCCGT i micMur1.scaffold_67426 n 0 C 0 s tetNig2.chrUn_random 51488709 33 - 107808587 tttctcacctgtgtgaacgcGCAGGTGCTTGGT i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102972979 33 - 400509343 CTTATTGCCTGTGTGAACTTTCAGGTGGACTGA i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16804765 33 + 20083130 CTCGTCATCTGTATGGACTCTTTTGTGAGTTCT i gasAcu1.chrXIII I 2330 C 0 s oryLat2.chr17 11137459 33 + 31848461 cctctcgcctgtgtgagttttcatgtgaTAGGT i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820367 33 - 71658100 TTTCTCTCCGGTATGGATCCTCATGTGTAGATT i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13040 33 + 23967 TCTCTCTCCAGTATGAATTTTATGATGTTCCTT i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=1181832.000000 s hg19.chrUn_gl000223 95043 168 + 180455 GAGCTGTTCCTTCCTACCAAAGGCTTTCCCACATTCACCGCATTGATAAGGATTATTTCCTGTGTGAACTCCCT---GATGTACAATGAGTTGTGTCTTCATATTGAAGGCTTTCCCACAATCACTGCATTGATAGGGTTTTTCTCCTGTATGCATTCGGATGT-GAACAAG s rheMac2.chr11 231542 168 - 134511895 GAGCTGTTCCTTCCTACCAAAGGCTTTCCCACATTCACCGCATTGGTAAGGATTATTTCCTGTGTGAACTCCCT---GATGTACGATGAGCTGTGTCTTCATATTGaaggctttcccacaatcgctgcattggtagggtttttctcctgtatgcattcggacgt-gaacaag i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259554 168 - 136387465 GAGCTGTTCCTTCCTACCAAAGGCTTTCCCACATTCACCACACTGATAAGGGTTATTTCCTGTGTGAACTCCCT---GATGTACAATGAGTTGTGTCTTCATATTGAAGGCTTTCCCACAGTCACTGCATTGATAGGGTTTTTCTCCTGTATGCATTCGGATGT-GAACAAG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3052 168 - 4218 GAGCTGTTCCTTCCTACCAAAGGCTTTCCCACATTCACCGCATTGATAAGGATTATTTCCTGTGTGAACTCCCT---GATGTACAATGAGTTGTGTCTTCATATTGAAGGCTTTCCCACAATNACTGCATTGATAGGGTTTTTCTCCTGTATGCATTCGGATGT-GAACAAG i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220265 168 - 135371336 GAGCTGTTCCTTCCTACCAAAGGCTTTCCCACATTCACCGCATTGATAAGGATTATTTCCTGTGTGAACTCCCT---GATGTACAATGAGTTGTGTCTTCATATTGAAGGCTTTCCCACAATCACTGCATTGATAGGGTTTTTCTCCTGTATGCATTCGGATGT-GAACAAG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 40954 168 - 57811 GAGCTGTTCCTTCCGACCAAAAGCTTTCCCACATTCACTGCACTGGTAAGGGTTATTTCCCGTGTGGACTCCCT---GATGTACAACAAGCTGTGTTTTCATATTGAAGGCTTTTCCACAGTCATTGCATTGATAGGGTTTCTCTCCGGTGTGCATTCTGATGT-GAACGAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 275894 168 + 667635 GAGCTGCTCCTTCCTCCCAAAAGCTTTCCCACACTCACTGCACTGATAAGGATTGTTTCCCGTATGGACACCCT---GATGCACCACAAGCTGTGTCTTCATGTTGAAGGCTTTCCCACAGTCCCCGCACTGGTAGGGCTTCTCTCCTGTGTGCATTCGGACAT-GAACCAG i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9313 168 - 12560 GAGTTGTTCCTTCCTCCCGAAGGCCTTCCCACACTCACGGCACTGATAAGGATTATTTCCTGTGTGAATTCCCT---GATGTACAGTGAGCTGTGTCTTCGTATTGAAGGCTTTCCCACAATCACTGCATTGATAGGGTTTCTCTCCTGTATGCGTTCTGATGT-GAACGAG i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213601 168 + 42029645 aagttgttccttcctaccaaaggctttcccacattcactgcactgataaggattatttcccgtgtggattccct---ggtgaacaacaagttgtgtcttcatgttgaaggctttcccacaatcgctgcactgatagggtttctcccctgtgtgcattctgatgt-gaaccag i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167648 168 - 94057673 GAGCTGTTCCTTCCTACCAAAGGCTTTCCCGCATTCACTGCATTGGTAAGGATTATTTCCTGTGTGAATTCCCT---GATGTACAACAAGTTGTGTCTTCATATTGAAGGCTTTCCCACAATCACTGCACTGATAGGGTTTCTCTCCTGTGTGCATTCTGATAT-GAACAAG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992818 168 - 76506943 GAGCTGTTCCTTCCTGCCAAAGGCTTTCCCACACTCACTGCATTGATAAGGATTATTTCCTGTATGAATTCCCT---GATGCACAACAAGTTGTGTCTTCATATTGAAAGCTTTGCCACAGTCACTGCATTGATAGGGTTTTTCTCCTGTGTGCATCCTAATGT-GAACAAG i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 220859 166 + 553670 TAGACTACTCTTAAATGCAAAACATTTCCCACACTCCGTACAGGAAAAAGGTTTCTCCCCTGTGTGGGTTCTATGTCGATGGACAGTAACTTCTGATGAAGTGAAAAAACATTTCCCACACTCAGAGCAAGAATAAGGTTTCTCCCCTGTGTGGATTCGTCTTT-GA----- i xenTro2.scaffold_677 C 0 C 0 s micMur1.scaffold_67426 33 167 + 5244 GAGCTGTTCCTTTCTACCAAAGGCTTTCCCACATTCACTGCACTGATATGGATTATTTCCTGTGTG-ACTCCCT---GATGCACAATGAGTTGTGTCTTCATATTGAAGGCTTTCCCACAATCACTGCATTGATAGGGTTTCTCTCCTGTATGCATTCTGATGT-GAACGAG i micMur1.scaffold_67426 C 0 C 0 s tetNig2.chrUn_random 51488742 168 - 107808587 GAGCGCAGAGGTCTGATTGAAGGATTTCCCACATGTTTGACAGCTGAagggtttctcacctgtgtgaactctaa---TGTGCCGAGTCAATGCAGACTTATGACTGAATGCATTTCCACAGGTTTCACATGTGTAAggtctctcacctgtgtgaatCCTCCTGT-GTTTGGT i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102973012 169 - 400509343 CAAACTTGTTTTTTGTATGAAAGCTTTTCCACAGGTTTTGCAAATGTACggcttctcacctgtgtgaatctTTA---TGTGGTCTGCCAATTTACTACTCTGTCtgaaggctttcccacatgttttacaatTGTAtggcttctcacctgtgtggatCCGGGTGTggtttgaa i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16804798 168 + 20083130 CAATTGTGATGTCCAACTAAATCTTTTCCCACACAACTTACAAGAATAAGGCTTCTCACCTGTATGGACTCTTG---TATGAGCATTTAATAGTTTGCTCCAACTGAATCTTTTCCCGCAAGTGTTGCAAGAATACGGCTTTTCACCTGTATGGATTCTTACGT-GAGTGAT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137492 168 + 31848461 CAAATTCCTTAAGGAGACGAAGACTTTCTTACAAATATCACACAAAAAAGGGTTCTCAGCTGTGTGAGTTCTTA---TGTGGGCTTTTAATTTAGACCTTTGAGAAAAGTTTTTTCCACATACTTCACAAGTGAAAGGCCTCTCACCCGTGTGAGTTCCCATGT-GGATATT i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820400 167 - 71658100 AAGGTGTTCTGATCGGTTGAAACTCTTCCCACACTGAGTGCATGTGAATGGTTTCTCTCCAGTGTGGATCCTCA---TGTGCTTATTAAGAGATGATGATTGGCTGAAACTGTTCCCACACTGAGTGCATGTGAATGGTTTCTCTCCAGTGTGGATCCTCATGT-GTA-GAT i danRer6.chr4 C 0 C 0 s petMar1.Contig11358 14355 168 + 15648 aagatgtgatgactgttcaaaggcctctccacacacagtgcacttgaagggtgtttctactgtgtgtattctct---ggtgtgttttaagaTGGGATGACTTTGCaaaggccttcccacaaacagtgcacttgaagggtgtctctcctgtgtgacttctctggt-gtatttt i petMar1.Contig11358 I 60 I 514 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=440377.000000 s hg19.chrUn_gl000223 95211 93 + 180455 GAGA-TAGGACTTACTCCT--------A-AAGGCTTTCCCACATTCACTGCATTTATGGGGTTTCACTCCTGTATGAGTTCTCTGGTGTACAAC------------GAATGGAGA s rheMac2.chr11 231710 93 - 134511895 gaga-taggacttactcct--------a-aaggctttcccacattcactgcatttatgtggtttcactcctgtgtgcgttctctggtgtacaac------------gaatggaga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259722 93 - 136387465 GAGA-TAGGACTTACTCCT--------A-AAGGCTTTCCCACATTCACTGCATTTATGGGGTTTCACTCCTGTATGAGTTCTCTGGTGTACAAT------------GAATGGAGA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3220 93 - 4218 GAGA-TAGGACTTACTCCT--------A-AAGGCTTTCCCACATTCACTGCATTTATGGGGTTTCACTCCTGTATGAGTTCTCTGGTGTACAAC------------GAATGGAGA i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220433 93 - 135371336 GAGA-TAGGACTTACTCCT--------A-AAGGCTTTCCCACATTCACTGCATTTATGGGGTTTCACTCCTGTATGAGTTCTCTGGTGTACAAC------------GAATGGAGA i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41122 93 - 57811 GAGG-TAGGACTTACTCCT--------A-AAGGCTTTTCCACATTCACTACATTTGTGGGGTTTCACTCCTGTGTGAGTTCTCTGGTGTACGAC------------AAATGGTGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276062 92 + 667635 GAGG-TAGGACTTGCTTCT--------A-AAGGACTTCCCACACTCATTGCACTTATGTGGTTTCACTCCAGTGTGAGTTCTCTGGTGTACAAC------------AAATGG-GA i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9481 93 - 12560 GAGG-TATGACTTACTCCT--------A-AAGGCTTTCCCACATTCGTTGCATTTATGGGGTTTCACTCCGGTGTGAGTTCTCTGGTGTACAAC------------AAATGGTGA i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213769 93 + 42029645 gagg-tatgacttactcct--------a-aaagctttcccacattcactgcatttatgaggcttcactcctgtgtgagtcctctggtgtacaac------------aaatggtga i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167816 93 - 94057673 GAGG-TATGACTTACTCCT--------A-AAGGCTTTCCCACATTCACTGCATTTATGGGGTTTTACTCCTGTATGAGTTCTCTGGTGTACGAC------------GAATGGTGA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29992986 93 - 76506943 GAGG-TATGACTTACTCCT--------A-AAGGCTTTCCCACATTCACTGCATTTATGGGGTTTCACTCCTGTATGAGTTCTCTGGTGCACAAC------------AAATGGTGA i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 221025 101 + 553670 TGGA-TAGTACATTCTGATGAAGTGGAA-AAACATTTGCCACATTCAGAACAAGAATATGGTTTCTCCCCTGTGTGAGTCCTTTGATGACGAGC------------CAAGTTGGA i xenTro2.scaffold_677 C 0 I 4193 s micMur1.scaffold_67426 200 93 + 5244 GAGG-TAGGATTTACTCCT--------A-AAGGCTTTCCCACATTCATTGCATTTATGGGGTTTCACCCCTGTGTGAGTTCTCTGGTGTACAAC------------AAATGGTGA i micMur1.scaffold_67426 C 0 C 0 s tetNig2.chrUn_random 51488910 93 - 107808587 CAGG--GCATCGGTGGTGG--------AGAACGCTTTCCCACAGATTTTGCAACTGTACGGCCTCTCCCCTGTGTGACTCCTCATGTGGACAAC------------TAATGTGGA i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102973181 92 - 400509343 aaat--atttttttaatct--------a-aatgctttcccacatgttttacagatgTAGGGCTTCTCACCAGTATGGATTCTCAAATGGCTTGA------------CAAGTTAGT i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16804966 25 + 20083130 CAAT-------------------------ACTGATTTTC--------------------------------------------GATTGAATTTT--------------------- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137660 93 + 31848461 TAAGGAAGACTtataagaa--------a-actgtttttc-acaGACTTCACAAGAATAAGGCCTT------------tcacctgtgtgaattctcatgtggaTCTTTAAGTCTCT i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820567 94 - 71658100 TAAGGGATGATGATATCCT--------AAAACTCTTCTC-ACACTGAGTGCACGTGAATGGTTTTTCTCCAGTGTGGATCATCATGTGTTTACT------------AAGGTTTGA i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13073 93 + 23967 CAGG-GTGGATGCCTGTAA--------A-AACCTTTTCCCACAATCTGTGCATATAAATGGCCTTTCTCCAGTGTGCGTGAACTGATGTGTTTT------------GAGGGAAGA i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=231506.000000 s hg19.chrUn_gl000223 95304 40 + 180455 CTTCAAACT----AAAGGCTTTCCCACATTCGCTGCATTCATAC s panTro2.chr12 220526 40 - 135371336 CTTCAAACT----AAAGGCTTTCCCACATTCGCTGCATTCATAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3313 40 - 4218 CTTCAAACT----AAAGGCTTTCCCACATTCGCTGCATTCATAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259815 40 - 136387465 CTTCAAACT----AAAGGCTTTCCCACATTCGCTGCATTCATAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231803 40 - 134511895 cttcaaact----aaaggctttcccacattcactgcattcatag i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 293 40 + 5244 CTTCAAACT----GAAGGCCTTCCCACATTCACTACATTCATAC i micMur1.scaffold_67426 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41215 40 - 57811 CTTCAAACT----AAAGGCTTTCCCACATTCACTACATTCGTAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276154 39 + 667635 CTTCAGGCT----AAAGGCTTTCTCACATTCAC-ACATTCATAA i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9574 40 - 12560 CTTCAAACT----AAAGGCTTTCCCACATTCACTGCATTCATAG i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213862 40 + 42029645 cttcaaact----aaaggctttcccacactcaccacattcataa i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167909 40 - 94057673 CTTCAAACT----AAAGGCTTTCCCACATTCGCTACATTCGTAG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29993079 40 - 76506943 CTTCAAACT----AAAGGCTTTCCCACATTCACTGCATTCATAT i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 225319 40 + 553670 CTTAAATGC----AAAACATTTCCCACACTCCGTACAGGAAAAA i xenTro2.scaffold_677 I 4193 C 0 s tetNig2.chrUn_random 51489003 40 - 107808587 ACTGTGTTT----GAAcgctttcccacatgttttacagcTGTAG i tetNig2.chrUn_random C 0 I 4756 s fr2.chrUn 102973273 40 - 400509343 TTTTTCTAT----AAAGCCTTTACCACATATGTTGCAAACAAAT i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16804991 24 + 20083130 --------------------TTCCCACACATTTTGCAAGAAAAC i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137753 40 + 31848461 ACTTTGCAT----GAAACCCTTTTGACATAGTTGACAAGTAAAA i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820661 40 - 71658100 TGAGCAGTT----GAAACTCTTCCCACACCGAGTGCATGTGAAT i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13166 40 + 23967 ----AGGCTGAGAAAACCTCTGGCCACAATCTTGGCATGCATAT i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=265263.000000 s hg19.chrUn_gl000223 95344 33 + 180455 GGTTTCACTCCTGTGTGACTTCTCTG---GTGTAAA-------- s panTro2.chr12 220566 33 - 135371336 GGTTTCACTCCTGTGTGACTTCTCTG---GTGTAAA-------- i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3353 33 - 4218 GGTTTCACTCCTGTGTGACTTCTCTG---GTGTAAA-------- i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 259855 33 - 136387465 GGTTTCACTCCTGTGTGACTTCTCTG---GTGTAAA-------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 231843 33 - 134511895 ggtttcactcctgtgtgacttctctg---gtgtaaa-------- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 333 33 + 5244 GGTTTGACACCTGTATGACTTCTCTG---GTGTAAA-------- i micMur1.scaffold_67426 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41255 33 - 57811 GGTTTCACTCCCGTATGACTTCTCTG---ATGTAAA-------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276193 31 + 667635 GG-CTCATGCCTGTGTGACTTCTCTG----TGTAAA-------- i cavPor3.scaffold_248 C 0 C 0 s myoLuc1.scaffold_130229 9614 33 - 12560 GGCTTCACTCCTGTATGACTTCTCTG---GTGTAAA-------- i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213902 33 + 42029645 ggtttcactcctgtgtggcttctctg---gtgtaag-------- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167949 33 - 94057673 GGTTTCACTCCTGTATGACTTCTCTG---GTGTAAA-------- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29993119 33 - 76506943 GGTTTCACTCCTGTATGGCTTCTCTG---GTGTAAA-------- i bosTau4.chr17 C 0 C 0 s xenTro2.scaffold_677 225359 36 + 553670 GGTTTCTCCCCTGTGTGGGTTGTATGTCGATGGACA-------- i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51493799 33 - 107808587 GGCTCCTCGCCTGTGTGACCTCTCAT---GTGGACA-------- i tetNig2.chrUn_random I 4756 C 0 s fr2.chrUn 102973313 33 - 400509343 GGTTTCACACCTACGTGGATTCTCAT---GTGCCGT-------- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16805015 33 + 20083130 GGTTTTTCACCTGTATGGATTCTTAA---ATGAGAA-------- i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137793 33 + 31848461 GGCCTTAAACTTGTGTGAGTTCTCAC---ATGACAG-------- i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820701 33 - 71658100 GGTTTCTCTCCTGCGTGGATCCTCAT---GTGTAGA-------- i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13206 41 + 23967 GGCCTTTCTCCGGTGTGGGTCAACCG---ATGAACCTTCATGTA i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e vicPac1.scaffold_16107 4486 181 - 8759 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=405988.000000 s hg19.chrUn_gl000223 95377 75 + 180455 AGAAGC--------------------------TGTGATTTCC----AACTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTGCAGCCATAGGGTTTCCCT----CCTGTGTGAATTTCC s myoLuc1.scaffold_130229 9647 75 - 12560 AGAAGC--------------------------TGTGACTTCC----AGCTATA---------------------------------------------GG---C-------------TTTCCCACAGTCACTGCAGCCATAAGGTTTCCCT----CCTGTGTGAATTTCC i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3213935 75 + 42029645 ataagc--------------------------tgtgacttcc----agctgta---------------------------------------------gg---c-------------tttcccacattcactgcagccataaggtttccct----cctgtgtgaatttcc i canFam2.chr26 C 0 C 0 s equCab2.chr8 64167982 75 - 94057673 ATAAGC--------------------------TGTGATTTCC----AGCTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTGCAACCATAAGGTTTCCCT----CCCGTGTGAACTTCC i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29993152 75 - 76506943 ATCAGT--------------------------TGTGATTTCC----AGCTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTGCACCCGTAAGGTTTCCCT----CCTGTGTGAATTTCC i bosTau4.chr17 C 0 C 0 s vicPac1.scaffold_12056 2092 75 - 46154 CTGAGC--------------------------TTCGCCTTTT----CCCTGTA---------------------------------------------AG---C-------------TCTTCCACACTCTTTGCATTCGTAGGGTTTCTCT----CCTGTGTGGGTCCTA i vicPac1.scaffold_12056 n 181 C 0 s cavPor3.scaffold_248 276224 38 + 667635 A-CAGC--------------------------TGAGACTC-------ACTGTA---------------------------------------------GG---C-------------TG--CCGCACTCACTGCA----------------------------------- i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41288 75 - 57811 ATGAGC--------------------------TGCGATTTCC----AGCTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTACAACCATAGGGTTTCCCT----CCTGTGTGAATTTCC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_67426 366 75 + 5244 ATCAGC--------------------------TGTGATTTCC----AACTGTA---------------------------------------------TG---C-------------TTTCCCACATTCACTGCAACCATAGGGCTTCCCT----CCTGTGTGAATTTCC i micMur1.scaffold_67426 C 0 C 0 s rheMac2.chr11 231876 75 - 134511895 agaagc--------------------------tgtgatttcc----aactgta---------------------------------------------gg---c-------------tttcccacattcactgcagccatagggtttccct----cctgtgtgaATTTCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259888 75 - 136387465 AGAAGC--------------------------TGTGATTTCC----AGCTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTGCAGCCATAGGGTTTCCCT----CCTGTGTGAATTTCC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3386 75 - 4218 AGAAGC--------------------------TGTGATTTCC----AACTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTGCAGCCATAGGGTTTCCCT----CCTGTGTGAATTTCC i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220599 75 - 135371336 AGAAGC--------------------------TGTGATTTCC----AACTGTA---------------------------------------------GG---C-------------TTTCCCACATTCACTGCAGCCATACGGTTTCCCT----CCTGTGTGAATTTCC i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 225395 73 + 553670 ---------------------------------GTAACTTCTGATGAAGTGAA---------------------------------------------AAAACA-------------TTTCCCACACTCAGAGCAAGAATAAGGTTTCTCC----CCTGTGTGGATTC-- i xenTro2.scaffold_677 C 0 I 176 s tetNig2.chrUn_random 51493832 75 - 107808587 TGCAAT--------------------------GCAGAACTTT----GTTTGTA---------------------------------------------gg---c-------------tttcccacatgttttacacaaataggGTTTCTcc----cctgtgtgaactctc i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102973346 75 - 400509343 GACAAg--------------------------tcatttcttc----ttttaaa---------------------------------------------ag---C-------------TTTCCCACATGTTGTGCAGATACAGGGCTTCTCG----CCTGTGTGGACTCTC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16805048 75 + 20083130 CTCAAA--------------------------AGAGATGCCC----GACGGAA---------------------------------------------TA---C-------------TTTTCCGCATGTGACGCAAGGATACGGTTTCTCA----CCCGAGTGTATTTTT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137826 159 + 31848461 GTCAAATTTCTCAAGGAGGCAAAAACTTTCTTACAAATTTTA----CACGGAAAAAGCTCCTCAGCTGTGTGAGTTCCTATGTGGGCTTTTAATTCACTA---CCTGTggtgaaacattttctacatacTTCACAAGTGAAAAGCCTCTCG----CCCGTGTGAATTCTC i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820734 75 - 71658100 TTAAGG--------------------------GATGTTGATA----AGCTGAA---------------------------------------------AC---T-------------CTTCCCACACTGAGTGCATGTGAATGGTTTCTCT----CCAGTGTGGATCCTC i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13247 67 + 23967 AGAAGC----------------------------------------CTTTGAA---------------------------------------------AA---CCC-----------TTTTCCGCAGTCATTGCAAACAAATGGCTTCTCTAAAGAATGTGTCAAC---- i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I e choHof1.scaffold_177942 2470 610 - 3798 M a score=1104898.000000 s hg19.chrUn_gl000223 95452 166 + 180455 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-CTTCTCGCA------------------------------------------------------------------------------------------------CTCACTACATGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-AA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTACTGCATTCATAAGG-TCTCTCTCCTGTATGAATTC s myoLuc1.scaffold_130229 9722 166 - 12560 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-TTTGCCACA------------------------------------------------------------------------------------------------TTCACTACAGGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGGTGAGCGTT-AA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACACTTAGTGCATTCATAAGG-TCTCTCCCCTGTATGAATTC i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3214010 166 + 42029645 tgatggacgatgag------ctgtgacctgaag---gagaatac-cttcccaca------------------------------------------------------------------------------------------------gtcactacaggagtaggg-cttttctcctgtgtggac---tctctgatgagcgtt-aa-ggtttgac-ttgg---cacta---aacgccct-ttcacacttggtgcattcgtaagg-tctctctcccgtgtgaattc i canFam2.chr26 C 0 C 0 s equCab2.chr8 64168057 167 - 94057673 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-TTTCCCACA------------------------------------------------------------------------------------------------TTCGCTACATGAGTAGGG-CTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-AAGGGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTAGTACATTCATAAGG-TCTCTCTCCTGTATGAATTC i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29993227 166 - 76506943 TGGTGGACAATAAG------TTGTGACCTGAAA---GAGAAGAC-TTTCCCACA------------------------------------------------------------------------------------------------TTCGATGCAAGAGTAGGG-CTTTTCTCCTGTGTGGAC---TCTTTGATGAGCATT-GA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTAGTGCACTCATATGG-TCTCTCTCCTGTATGAATTC i bosTau4.chr17 C 0 C 0 s vicPac1.scaffold_12056 2167 166 - 46154 TGGTGTAGAATGAGATGATATTTTGTTCTAAAG---GA-------TTTCTGACA------------------------------------------------------------------------------------------------CTCGATACAGTCATACGG-TTTCTCTCCTGTGTGAGT---TCTCTGGTGCAGCGT-GA-GATGACAT-TTTG---TACTG---AAACCTCT-CTGACATTCACTGCATCTGTGCGG-CTTCTCTCCCGTATGAGTTC i vicPac1.scaffold_12056 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41363 166 - 57811 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-TTTTCCACA------------------------------------------------------------------------------------------------TTCACTACATGAGTAGGG-TTTTTCTCCTGTGTGAAC---TCTCTGATGAGCATT-AA-GGTTTGAC-TTAG---CACTG---AAGGCTCT-TTCACATTTAGTGCATTCATAAGG-TCTCTCTCCTGTATGAATTC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s micMur1.scaffold_67426 441 166 + 5244 TGATGGACGATGAG------CTGTGACCTGAAA---GAAAAGAC-TTTCTCACA------------------------------------------------------------------------------------------------TTCACTACACGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-AA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTAGTGCATTCATAAGG-TCTCTCCCCTGTATGACTTC i micMur1.scaffold_67426 C 0 C 0 s rheMac2.chr11 231951 166 - 134511895 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-CTTCTCGCA------------------------------------------------------------------------------------------------CTCACTACATGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-AA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTACTGCATTCATAAGG-CCGCTCTCCTGTATGAATTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 259963 166 - 136387465 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-CTTCTCGCA------------------------------------------------------------------------------------------------CTCACTACATGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-AA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTACTGCATTCATAAGG-TCTCTCTCCTGTATGAATTC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3461 166 - 4218 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-CTTCTCGCA------------------------------------------------------------------------------------------------CTCACTACATGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-GA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTACTGCATTCATAAGG-TCTCTCTCCTGTATGAATTC i gorGor1.Supercontig_0208698 C 0 C 0 s panTro2.chr12 220674 166 - 135371336 TGATGGACAATGAG------CTGTGACCTGAAA---GAGAAGAC-CTTCTCGCA------------------------------------------------------------------------------------------------CTCACTACATGAGTAGGG-TTTTTCTCCTGTATGAAC---TCTCTGATGAGCATT-AA-GGTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACATTTACTGCATTCATAAGG-TCTCTCTCCTGTATGAATTC i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_677 225644 169 + 553670 TGATGGACAGTAAG------TTTTGATGAG-CT---GGCAAAACATCTCCCACA------------------------------------------------------------------------------------------------ATCAGAACAAGAAAATGG-TTTCTCCCCTGTGTGAATTCGTCTTTGATGAATAGT-AC-ATTCTGAT-AAAG---TGGCA---AAACATTT-CCCACATTCAAAACAAGAATATGG-TTTCTCCCCTGTGTGAGTCC i xenTro2.scaffold_677 I 176 I 77 s choHof1.scaffold_177942 3081 146 - 3798 ------------------------------AAG---GGAAAGACTTTTTCCACA-----------------------------------------------------------------------------------------------ATTCATAACATGCATAGGGGTTTTTTCCCTGTGTGAAC---TCTATGATGAGCATTTAA-GTTTTGAC-TTGG---CACTG---AAGGCTCT-TTCACACTTGGTGCACTCATAAGG-TCTCTCTCCTGTATGAATTC i choHof1.scaffold_177942 M 610 C 0 s cavPor3.scaffold_248 276262 224 + 667635 -------------------------------------------------TCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCATGTATAGGGCTTCTCCCCCTGTGTG-AC---TCTCTGGTGGGCATTAAA-GGTTTGAC--TAG---CACTG---AAAGCTCT-GTCACATTTAGTACATGCGTAAGGCCCTCTCCCCTGTATGGATAC i cavPor3.scaffold_248 C 0 C 0 s tetNig2.chrUn_random 51493907 166 - 107808587 atgtgctcagttaA------CGCACAGGTTTGG---ATGAATGA-cttcccaca------------------------------------------------------------------------------------------------tgttttacaagagTAGGG-TTTCTCGCCTGTGTGTCT---TCTCATGTGGACAAT-TA-AGGCCGACCGTTG---T-TTG---AAAGCTgc-cccacatgttttacaaacATGTGG-TTTCTCCCCCGTGTGTCTTC i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102973421 166 - 400509343 ATGTG---GCTTGA------CAAACTTGCTTTGTCTCTGAAATC-TTTGCCACA------------------------------------------------------------------------------------------------TGTATTACATACATATGG-CTTCTCGTCCGAGTGGAC---CTTCATGTGTACAGA-CA-GTTGGCATGTTTG---T-TTA---AAAGCTTT-TCCACACGTTGTGCACATATATGG-CTTCTCATTGGTGTGTATTG i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16805123 166 + 20083130 AAATGGCTGTTCAA------TGTCGACATCTGA---CTGAATAT-CTTCCCACA------------------------------------------------------------------------------------------------GGTGATGCAAGAATATGG-TCTCTCACCTGTGTGTGT---TCTCATATGAGTTTT-CA-A----CGTAGTTGATCTAGCA---AATCTTTT-TCCACATGTGCTACACGGATGTGG-TTTCTCACCTGTATGGACTC i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11137985 166 + 31848461 ATATGAACCTTTAA------GGAATACTTTtga---gtaaaatg-tttttcaca------------------------------------------------------------------------------------------------tactttacaagaataagg-ctTTTCACCTGTGTGAGT---CCTCATGTGGGCCTT-TA-AGT-CCCTACCTG---TAGtg---aaactttt-tccacatactTCACAAGTGAAAGG-CCTCtcacctgtgtgaattc i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820809 166 - 71658100 ATGTGTTTATTAAA------AGGTGATAAGTGG---CTGAAACT-CTTCCCACA------------------------------------------------------------------------------------------------CTGAGTGCATGTGAATGG-TTTCTCTCCAGTGTGGAT---CCTCATGTGTAGATT-AA-GGGATGATGATAT---G-CTG---AAACTCTT-CCCACATTGAGTGCATGTGAATGG-TTTCTCTCCGGTGTGGATCC i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13314 166 + 23967 GAATGTGTCTTCAA------TGTGGATTTAAGT---GAAAAACG-CTTTCCACA------------------------------------------------------------------------------------------------GTCTTGACATATAAAAGG-CTTCTCTCCAGTGTGGGT---CCTCAAATGAGCCTT-CA-GGTG-----TTGG---CCTTGAGAAAATCGCTGTTCACAATGTTTGCACATGTATGG-CTTCACTCCTGCATGTATTC i petMar1.Contig5115 C 0 C 0 e dasNov2.scaffold_9718 90439 0 + 100754 I e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I a score=298478.000000 s hg19.chrUn_gl000223 95618 41 + 180455 TGA----------GATG----TACAAT-GAGCTGTGACTTACAAC-G-AAAAGCTTTC s panTro2.chr12 220840 41 - 135371336 TGA----------GATG----TACAAT-GAGCTGTGACTTACAAC-G-AAAAGCTTTC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3627 41 - 4218 TGA----------GATG----TACAAT-GAGCTGTGACTTACAAC-G-AAAAGCTTTC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260129 41 - 136387465 TGA----------GATG----TACAAT-GAGCTGTGACTTACAAC-G-AAAAGCTTTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232117 41 - 134511895 TGA----------GATG----TACAAT-GAGCTGTGACTTACAAC-G-AAAAGCTTTC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 607 41 + 5244 TAA----------GATG----TACAAT-GAGCTGTGATTTACAAC-G-AAAAGCCTTC i micMur1.scaffold_67426 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41529 41 - 57811 TAA----------GATG----CACAAT-GAGCTGTGATTTACAAC-G-AAAAGCTTTC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276486 42 + 667635 GGA----------GATG----GACGAT-GAGCTGTGACTTACAAC-GAAAAAGCTTTC i cavPor3.scaffold_248 C 0 C 0 s vicPac1.scaffold_12056 2333 41 - 46154 TCT----------GGTG----TATTAT-GAGCTTTGACTTATACC-T-GAAGGATCTG i vicPac1.scaffold_12056 C 0 C 0 s bosTau4.chr17 29993393 41 - 76506943 TGA----------GATG----TACAAT-GAGCTGTGATTTACAAC-G-AAAAGCTTTC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168224 43 - 94057673 TGA----------GATG----CACGATGAAGCTGTGATTTACAACGG-AAAAGCTTTC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214176 41 + 42029645 tga----------gatg----gacaat-cagctgtgatttacaac-g-aaaagctttt i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9888 41 - 12560 TGA----------GATG----AACAAT-GAGCTGGGATTTACAAC-G-AAAAGCTTTC i myoLuc1.scaffold_130229 C 0 C 0 s choHof1.scaffold_177942 3227 41 - 3798 TGA----------TATG----TACAAT-GAGCTGTGATTTACAAT-G-AAAAGCTTTC i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 80797 41 + 154172 TGA----------GATG----TACAAT-GAGCTGTGACTTACAAC-G-AAAAGCTTTC i dasNov2.scaffold_7587 I 1424 C 0 s xenTro2.scaffold_677 225890 51 + 553670 TGAGCTCGTCGTTGATG----GGCAGT-AAGTTTTGATGAGCTGG-C-AAAACATTTC i xenTro2.scaffold_677 I 77 C 0 s tetNig2.chrUn_random 51494073 41 - 107808587 TCA----------TGTG----GACAAT-TAATGTAGAACTGCGGT-T-GAAAGCTTCC i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 102973587 41 - 400509343 CTG----------TGTGCTGTGATAGT-TCatt----gccatttt-t-aaaagctttc i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16805289 41 + 20083130 TCA----------TGTG----TCTCTC-CAGTGTGGACTTATACT-T-AAAATGTTGT i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11138151 41 + 31848461 tca----------tgtg----aacATT-TAAGGAAGACTTTTGAG-T-AAAACGTTTT i oryLat2.chr17 C 0 C 0 s danRer6.chr4 43820975 41 - 71658100 TCA----------TGTG----AACCTT-AAGTTTGCTTTTGCTTG-C-CAAAATCTTT i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 13480 41 + 23967 TCT----------GGTG----AACAGC-TAACGTACGCCGACTTG-A-AAATGTTTTT i petMar1.Contig5115 C 0 C 0 e oryCun2.chrUn0106 695723 1020 + 1032594 I e otoGar1.scaffold_78004.1-39946 11596 2278 - 39946 I e loxAfr3.scaffold_113 119436 1162 - 3408981 I a score=422184.000000 s hg19.chrUn_gl000223 95659 44 + 180455 CCACATTCACTACACACACAG-TTTTTTTCTATGCTA-TGAGCTC-T s panTro2.chr12 220881 44 - 135371336 CCACATTCACTACACACACAG-TTTTTTTCTATGCTA-TGAGCTC-T i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3668 44 - 4218 CCACATTCACTACACACACAG-TTTTTTTCTATGCTA-TGAGCTC-T i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260170 44 - 136387465 CCACATTCACTACACACACAG-TTTTTTTCTATGCTA-TGAGCTC-T i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232158 44 - 134511895 CCACATTCACTACACACACAA-TTTTTTTCTATGCTA-TGAGTTC-T i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 648 44 + 5244 CCACATTCACTACACACACAG-TTTTTTTCTATGCTA-CGAGCTC-T i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 13874 44 - 39946 CCACATTCACTACAGACACAG-TTTTTTTCTATGTTA-TGGGCTG-G i otoGar1.scaffold_78004.1-39946 I 2278 C 0 s tupBel1.scaffold_103331.1-57811 41570 44 - 57811 CCACATTCACCACACACACAG-TTTTTTTCTATACTA-TGGGTGC-T i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276528 44 + 667635 CCACATTCATTACACACACAG-TTTTTTTCTATGTGG-TGAGCTC-T i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 696743 42 + 1032594 --ACATTCACTGCACACACAG-TTTTTTTCTATGCCA-TGACCTC-T i oryCun2.chrUn0106 I 1020 C 0 s vicPac1.scaffold_12056 2374 44 - 46154 GGGCATTCACTGCATTCATAA-GGTTTCCCTTCTGTG-TGAATTC-T i vicPac1.scaffold_12056 C 0 C 0 s bosTau4.chr17 29993434 44 - 76506943 CCACATTCGTTACATACACAG-TTTTTTTCTATACTA-TGAGTTC-T i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168267 47 - 94057673 CCACATTCACTACATACACAGTTTTTTTTCTATACTATTGAGCTCTT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214217 44 + 42029645 ccacattcattacacacacag-ttcttttctatactg-tgagctc-t i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9929 44 - 12560 CCACATTCACCGCATACACAG-TTTTTTTCTGTACTG-TGAGCTC-T i myoLuc1.scaffold_130229 C 0 C 0 s choHof1.scaffold_177942 3268 44 - 3798 CCACATTCACTACATACACAG-CTATTTTCTACTATA-TGAATTC-T i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 80838 44 + 154172 CCACATTCACTACATACACAG-TTTTTTTCTACTACA-TGAACTC-T i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_677 225941 44 + 553670 CCACATTCAGTACAGGAAAAA-GTTGCCTCTCCTGTG-TGGGTCC-T i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51494114 44 - 107808587 CCACACGTTGTACACATATag-ggtttctcacctgtg-tgaactc-t i tetNig2.chrUn_random C 0 I 284 s fr2.chrUn 102973628 41 - 400509343 cCACATGTCACACAAATAAAT-GGCTTC---CTTATG-TGGACTT-T i fr2.chrUn C 0 I 9 s gasAcu1.chrXIII 16805330 38 + 20083130 CCACATTTGTCACATTGCAAA-AATTCTTTACCTGTG-------A-T i gasAcu1.chrXIII C 0 I 17 s oryLat2.chr17 11138192 44 + 31848461 AGACagattttacaagaataa-ggcctttcacctgtg-tgagttT-T i oryLat2.chr17 C 0 I 20 s danRer6.chr4 43821016 40 - 71658100 CCACACTGAGTGCAGGTGAAA-CTATTTTTGTCTCTC-----CTT-T i danRer6.chr4 C 0 I 5 s petMar1.Contig5115 13521 44 + 23967 CCACACTGCTCACACATGTAC-ATCTTCTCTGCATTT-GTAGCCG-A i petMar1.Contig5115 C 0 C 0 e loxAfr3.scaffold_113 119436 1162 - 3408981 I a score=46372.000000 s hg19.chrUn_gl000223 95703 19 + 180455 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT s panTro2.chr12 220925 19 - 135371336 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3712 19 - 4218 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260214 19 - 136387465 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232202 19 - 134511895 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 692 19 + 5244 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 13918 19 - 39946 TCGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41614 19 - 57811 TTGA---TGCTTAAGAAAGT----------------------------------------------------------------------------------------GT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276572 19 + 667635 TTGA---TGTTTAAGGAAAT----------------------------------------------------------------------------------------AT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 696785 19 + 1032594 TTTA---TGCCTTAGGAAGT----------------------------------------------------------------------------------------AT i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_12056 2418 107 - 46154 GTGA---CGTCTTTTAAGATTTGTTACTGTGCTGAAAGACCTCACACGTAAATTATGTTCATGGCACTGGGCTTGAATGTGGGCGGGTTTCATGCAGATTATGGAAAAAT i vicPac1.scaffold_12056 C 0 C 0 s bosTau4.chr17 29993478 19 - 76506943 TTGG---TGCTTAATAAAAT----------------------------------------------------------------------------------------AT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168314 19 - 94057673 TTGA---TGCTCAAGAAAAT----------------------------------------------------------------------------------------AT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214261 19 + 42029645 ttga---tgcttaagaaaat----------------------------------------------------------------------------------------ag i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9973 19 - 12560 TTGA---TGCTTAAGAAAAT----------------------------------------------------------------------------------------AT i myoLuc1.scaffold_130229 C 0 C 0 s choHof1.scaffold_177942 3312 19 - 3798 TTGA---CATTTAAGAAAAT----------------------------------------------------------------------------------------AT i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 80882 19 + 154172 CTGA---TGCTCAAGAAAGT----------------------------------------------------------------------------------------AT i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_677 225985 28 + 553670 TAGA---TGTTTATTCAAATCATTTATCC-------------------------------------------------------------------------------AT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 51494442 4 - 107808587 ATGA---------------------------------------------------------------------------------------------------------- i tetNig2.chrUn_random I 284 C 0 s gasAcu1.chrXIII 16805385 20 + 20083130 TTGACAT----AGTGGGGTTAT--------------------------------------------------------------------------------------AG i gasAcu1.chrXIII I 17 C 0 s oryLat2.chr17 11138256 14 + 31848461 TTAA----------GGAGACGA--------------------------------------------------------------------------------------AG i oryLat2.chr17 I 20 C 0 s loxAfr3.scaffold_113 120598 11 - 3408981 -----------TAAAAAAAT----------------------------------------------------------------------------------------AA i loxAfr3.scaffold_113 I 1162 C 0 s petMar1.Contig5115 13565 19 + 23967 TTGA---TTTTTCAAAATAG----------------------------------------------------------------------------------------AT i petMar1.Contig5115 C 0 n 0 e fr2.chrUn 102973669 9 - 400509343 I e danRer6.chr4 43821056 5 - 71658100 I a score=318434.000000 s hg19.chrUn_gl000223 95722 56 + 180455 GGTTCTT---------------CATAACCATGAAA--CTTATCAGGATTCTTTCTTAAATAACTTCT---------GCTTGG s panTro2.chr12 220944 56 - 135371336 GGTTCTT---------------CATAACCATGAAA--CTTATCAGGATTCTTTCTTAAATAACTTCT---------GCTTGG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3731 56 - 4218 GGTTCTT---------------CATAACCATGAAA--CTTATCAGGATTCTTTCTTAAATAACTTCT---------GCTTGG i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260233 56 - 136387465 GGTTCTT---------------CATAACCATGAAA--CTTATCAGGATTCTTTCTTAAATAACTTCT---------GCTTGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232221 56 - 134511895 GGTTCTT---------------CATAACCAGGAAA--CTTATCAGAATTCCTTCTCAAATAACTTCT---------GCTTGA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 711 56 + 5244 GGTTCTT---------------CATAACCATAGAA--CTTATCAGGATTCTTTCTTATATAGCTTCT---------GATTGA i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 13937 56 - 39946 GGTTCTT---------------CATAGCCATGGAA--CTTATCAGGATTCTTTCTTACACAGCTTCT---------GCTTGA i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41633 56 - 57811 GATTCTT---------------CAAAACCATGAAA--CTTATCAGAATTTCTTCTTAAGTAACTTCT---------GCTGGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276591 56 + 667635 GATTCCT---------------CATAACCATGAAA--TTTATCAGGATTCTTTCTTATATAACTTCT---------GCTAAA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 696804 56 + 1032594 GATTCCT---------------CATAACCATGACA--CTTATCAAGATTCTTTCTTACATAACTTAT---------GCTTGA i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_12056 2525 64 - 46154 GACTTCC---------------CATGACCATTTAA--CTCATCAGAGTTCATT-TTGCATAGTTTCTACTCTGAAAACTTGA i vicPac1.scaffold_12056 C 0 C 0 s bosTau4.chr17 29993497 56 - 76506943 GATTCTT---------------TATACCCATGAAA--TTGATCAGTATTCTTTCTTAGACAGCTTGT---------GGCTGA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168333 56 - 94057673 GATGCTT---------------CATATGCATGAAA--CTCATTAGGATTCTTTCTTAGATAGCTTCT---------GATTGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214280 56 + 42029645 gattctT---------------CATATCCATGGAA--TTTATCAGGATTTTTTCTCAGACAGCTTTT---------GGTTGA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 9992 56 - 12560 GATTGTT---------------CATATCCATGAAA--CTTATCAGGATTCTTTCTTAGATAGTTTCT---------GGTTAA i myoLuc1.scaffold_130229 C 0 C 0 s choHof1.scaffold_177942 3331 56 - 3798 GACTCCT---------------CACATCCATGAAA--TTTATCAAGATTCTTTCTTACATAACTTCT---------GGTAGA i choHof1.scaffold_177942 C 0 C 0 s dasNov2.scaffold_7587 80901 56 + 154172 GATTCCT---------------CATATCCATGAAA--CTTATCAGGATTCTTTCTTACATAATTTCT---------GGTAGA i dasNov2.scaffold_7587 C 0 C 0 s xenTro2.scaffold_677 226013 71 + 553670 GATTTTTGTGGGGAGTTATCAGCATTTTTATCATA--TTTATTACCCTTCATTTTTAAAGGGCTGCT---------ACCCAG i xenTro2.scaffold_677 C 0 n 0 s tetNig2.chrUn_random 51494446 50 - 107808587 --TTTCC---------------CACATGTTTCACAACTGTATGG------TTTCTCACCCGTGTGAC---------TTCTCA i tetNig2.chrUn_random C 0 I 4 s gasAcu1.chrXIII 16805405 39 + 20083130 ACATCGT---------------TACTTTGACTGC-------------------CTCTTTTGTGCTTT---------TTCTTA i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr17 11138270 52 + 31848461 ACTTTCT---------------TACAAATATCACA--TGAAAAAAG----CTTCTCACCTGTGTGAC---------TTCTTA i oryLat2.chr17 C 0 I 4 s danRer6.chr4 43821061 29 - 71658100 ---------------------------ATACCATCAGTCTGTAAATGAGTTTTTTC-------------------------- i danRer6.chr4 I 5 C 0 s fr2.chrUn 102973678 44 - 400509343 ------C---------------TGCAGTTTTGACA--TGTACTGaaaatctttcccacatgttctac--------------- i fr2.chrUn I 9 C 0 s loxAfr3.scaffold_113 120609 56 - 3408981 GATTCTT---------------CATAGCCACAAAA--CTTATCGGGATTCTTCCTTACATAGGTGCT---------GGATGA i loxAfr3.scaffold_113 C 0 C 0 s petMar1.Contig11358 15037 37 + 15648 ------------------------------------GATTGTGCAAATGCCTTACCACACAAAGTAC---------ACTTGA i petMar1.Contig11358 I 514 C 0 a score=190554.000000 s hg19.chrUn_gl000223 95778 39 + 180455 AGCTG---AGT-------TTTGTG------TC------AAACTTTTT---CC----ACGTGTGTTATA s panTro2.chr12 221000 39 - 135371336 AGCTG---AGT-------TTTGTG------TC------AAACTTTTT---CC----ATGTGTGTTATA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3787 39 - 4218 AGCTG---AGT-------TTTGTG------TC------AAACTTTTT---CC----ATGTGTGTTATA i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260289 39 - 136387465 AGCTG---AGT-------TTTGTG------TC------AAACTTTTT---CC----ATGTGTGTTATA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232277 39 - 134511895 AGCTG---AGT-------TTTGTG------TC------AAACTTTTC---CC----ATGTGTGTTATA i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 767 39 + 5244 ACCTG---AGT-------TTTGTG------TC------AAACTTTTT---TC----ATGCGTGTTATA i micMur1.scaffold_67426 C 0 I 6 s otoGar1.scaffold_78004.1-39946 13993 39 - 39946 ACCTG---AGT-------ATTGTG------TC------AAACTTTTT---CC----ATGTATGTTATA i otoGar1.scaffold_78004.1-39946 C 0 I 6 s tupBel1.scaffold_103331.1-57811 41689 39 - 57811 ATATG---AGT-------TTTGTC------CC------CAACTTTTT---CC----ATGTGCATTATA i tupBel1.scaffold_103331.1-57811 C 0 I 6 s cavPor3.scaffold_248 276647 39 + 667635 ACCTG---AGT-------TTTTCA------TC------AAGCTTCTC---AC----ATGTGCATGATA i cavPor3.scaffold_248 C 0 I 6 s oryCun2.chrUn0106 696860 39 + 1032594 ATCTG---AGT-------TTTGTG------TC------AGGCTTTTC---CC----ATGTGTGCTATA i oryCun2.chrUn0106 C 0 I 6 s vicPac1.scaffold_12056 2589 39 - 46154 ATCTG---AAT-------TTTGTT------TC------ATACTTATT---CC----TCTTGAGACACA i vicPac1.scaffold_12056 C 0 I 6 s bosTau4.chr17 29993553 39 - 76506943 AGCTA---AGT-------TTTGTG------TC------AAACTTTTT---CC----ATGTGTTTTATA i bosTau4.chr17 C 0 I 6 s equCab2.chr8 64168389 40 - 94057673 ACCTG---AGT-------TCTGTG------TG------AAACTTCCT--ACC----ATGTGTGTTATA i equCab2.chr8 C 0 I 6 s canFam2.chr26 3214336 39 + 42029645 ACCTG---AGT-------TTTGTG------TC------AGACTTTTT---CC----ATGTGTGTTGTA i canFam2.chr26 C 0 I 6 s myoLuc1.scaffold_130229 10048 42 - 12560 ACCTG---ACC-------TTTGTG------TC------AAACTTTTTTTCCC----AAGTGTGTTATA i myoLuc1.scaffold_130229 C 0 I 6 s loxAfr3.scaffold_113 120665 39 - 3408981 ACCTG---AAT-------TTTGTG------TC------AAACTTTTT---CC----ATATGTGTTATA i loxAfr3.scaffold_113 C 0 I 6 s dasNov2.scaffold_7587 80957 39 + 154172 GTTTG---AGT-------TTTGTG------TC------AAATATTTT---CT----ATGTTTGTTATA i dasNov2.scaffold_7587 C 0 I 6 s choHof1.scaffold_177942 3387 39 - 3798 GCCCG---AGT-------TTTGTG------TC------AAAACTTTT---CC----ATGTTTGTTATA i choHof1.scaffold_177942 C 0 I 6 s xenTro2.scaffold_1263 87325 45 + 112973 ATCTGTTAGGA-------TTTGCA------TTACTCTAAAACTTTTC---CC----ACATTCTTT--- i xenTro2.scaffold_1263 I 27935 I 179 s tetNig2.chrUn_random 51494500 48 - 107808587 --------GACGGTTAGGGTATAACTATGTTT------GAacccttt---cc---cacatgttttaca i tetNig2.chrUn_random I 4 n 4 s fr2.chrUn 102973722 34 - 400509343 ------------------atttaaaaatcttt------ttacCCATG---TC-------TGTTTTACA i fr2.chrUn C 0 I 4 s gasAcu1.chrXIII 16805444 35 + 20083130 -------------------TTGAA-----TTT------AGGCTCTCG---AGTTGTAGTTGATTCAGT i gasAcu1.chrXIII C 0 I 10 s oryLat2.chr17 11138326 39 + 31848461 --------GGC-------TTTTAA-----TTT------Agacctttg---agaaaaaaattttCCACA i oryLat2.chr17 I 4 I 19 s petMar1.Contig11358 15074 26 + 15648 -----------------------------------AGGGtgtttctc---ct----gtgtgtattctc i petMar1.Contig11358 C 0 C 0 e danRer6.chr4 43821090 0 - 71658100 C a score=164386.000000 s hg19.chrUn_gl000223 95817 30 + 180455 GAGTCTCTGTC-------TTGAAGAATCAT------------GGGTTTT s panTro2.chr12 221039 30 - 135371336 GAGTCTGTGTC-------TTGAAGAATCAT------------GGGTTTT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3826 30 - 4218 GAGTCTCTGTC-------TTGAAGAATCAT------------GGGTTTT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260328 30 - 136387465 GAGTCTCTGTC-------TTGACGAATCAT------------GGGTTTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232316 30 - 134511895 GAGTCTCTGTC-------TTGAAGAATCAT------------GGGTTTT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 812 30 + 5244 GAGTCTTTCTT-------TTGAAGACACAT------------GGGTTTT i micMur1.scaffold_67426 I 6 C 0 s otoGar1.scaffold_78004.1-39946 14038 30 - 39946 GAGTCTTTGTA-------TTGAAGAAAGAT------------GGGTTTT i otoGar1.scaffold_78004.1-39946 I 6 C 0 s tupBel1.scaffold_103331.1-57811 41734 30 - 57811 GAGTCTTTGTC-------TTGGAAAAATAT------------CGGTTTT i tupBel1.scaffold_103331.1-57811 I 6 C 0 s cavPor3.scaffold_248 276692 30 + 667635 GAGCCTCTGTC-------CAGAAGAAACAG------------GGGTTTT i cavPor3.scaffold_248 I 6 C 0 s oryCun2.chrUn0106 696905 30 + 1032594 GAGCCTTTGTT-------TTGAAAAGACAC------------AGGTTTT i oryCun2.chrUn0106 I 6 C 0 s vicPac1.scaffold_12056 2634 30 - 46154 GGGTCTTTCTA-------TAAATGGAACAA------------TGTTTTC i vicPac1.scaffold_12056 I 6 C 0 s bosTau4.chr17 29993598 30 - 76506943 GAGTCTTTGTC-------TTGAAGAAATGT------------GGGTTTT i bosTau4.chr17 I 6 C 0 s equCab2.chr8 64168435 30 - 94057673 GAGTCTTGGTC-------TTGAAGAAACAT------------GGGTTTT i equCab2.chr8 I 6 C 0 s canFam2.chr26 3214381 30 + 42029645 GATTCTTTGTC-------TTGAAGAAACAT------------GGATTCT i canFam2.chr26 I 6 C 0 s myoLuc1.scaffold_130229 10096 30 - 12560 GAGTCTTTGTC-------TTGAAGAAGCCT------------GGGTTTT i myoLuc1.scaffold_130229 I 6 C 0 s loxAfr3.scaffold_113 120710 30 - 3408981 GAGTCTTTGTC-------TTGAAGAAACAT------------GGTTTGT i loxAfr3.scaffold_113 I 6 C 0 s dasNov2.scaffold_7587 81002 30 + 154172 GAGTCTTTGTC-------TTGAGGAGACAC------------GGCTTGT i dasNov2.scaffold_7587 I 6 C 0 s choHof1.scaffold_177942 3432 30 - 3798 GAGTCCTTGTC-------TTGAGGAAACAC------------AGCTTGT i choHof1.scaffold_177942 I 6 C 0 s xenTro2.scaffold_1263 87549 42 + 112973 GTTTCTCCCCC-------GTGTGAATTAATTGGTGTGCTGTAAGGTGTT i xenTro2.scaffold_1263 I 179 C 0 s tetNig2.chr18 158921 35 - 11077504 GAGTTCTTGCTGTTCCTCCTTAAT--TTGT------------GGAGGTT i tetNig2.chr18 I 3002 I 3 s fr2.chrUn 102973760 29 - 400509343 GAGTTTATGCT--------TGAATGATGgt------------gtgcatt i fr2.chrUn I 4 N 0 s gasAcu1.chrXIII 16805489 16 + 20083130 ------TTGCC-TCCTTTCTGAA-------------------------- i gasAcu1.chrXIII I 10 T 30295 s oryLat2.chr17 11138384 24 + 31848461 ------GTGTC-ACccgtgtgaattctcat------------g------ i oryLat2.chr17 I 19 I 187 s petMar1.Contig11358 15100 27 + 15648 --tggtgtgct-------tTAAGacctgat------------gactgt- i petMar1.Contig11358 C 0 C 0 e danRer6.chr4 43821090 0 - 71658100 C a score=415534.000000 s hg19.chrUn_gl000223 95847 51 + 180455 GC--TCAGATTAAG---TCTTCCCAACACAC----TACA-------AG----------CATAGCTTCTTTCAATACT s panTro2.chr12 221069 51 - 135371336 GC--TCAGATTAAG---TCTTCCCAACACAC----TACA-------AG----------CATAGCTTCTTTCAATACT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3856 51 - 4218 GC--TCAGATTAAG---TCTTCCCAACACAC----TACA-------AG----------CATAGCTTCTTTCAATACT i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260358 51 - 136387465 GC--TCAGATTAAG---TCTTCCCAACACAC----TACA-------AG----------CATAGCTTCTTTCAATACT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232346 51 - 134511895 GC--TCAGATTAAG---TCTTCCCAACACAC----TACA-------AG----------CATAGCTTCTTTCAATACT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 842 51 + 5244 GC--TGAGATGAAG---TTTTCCAAACACAT----TACA-------AG----------CATAGCTTCTCTCAATGCT i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14068 51 - 39946 GC--TCAGATGAAG---TTTTTCAAACACAT----TATA-------AG----------CATAACTTCTCTCAATACT i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41764 51 - 57811 GT--TCGGATGAAG---TTTTCCAAACATAT----TACA-------AG----------TATATTTCCTCTCAACACT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276722 51 + 667635 GC--TTAGATGAAG---TTTTCCAAGCACAT----TGCA-------TG----------CATAGCTTCTCTTAACACT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 696935 51 + 1032594 GC--TCAGATGAAG---TTTTCCAAACACAT----TACA-------AG----------CAAAGCTCCTCTCAACACT i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_12056 2664 54 - 46154 GC--TCAAAGAAAATATTTTCCCCCATGTAC----TGTT-------TT----------CATGATCTCTCTCTAGAGG i vicPac1.scaffold_12056 C 0 n 0 s bosTau4.chr17 29993628 51 - 76506943 GC--TCAGATGAAG---TTTTCCAAATGCAT----TACA-------AG----------CATAGCTTCTCTGAACACT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168465 51 - 94057673 GC--TCAGATGAAG---TTTCCCAAATGCAT----TACA-------AG----------CATGACTTCTCTCAACACG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214411 51 + 42029645 GC--TCAGATGACG---TTTTCCAAACGTGC----CACA-------AG----------CATAATTTCTCTCAACATT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 10126 51 - 12560 GC--TCAGATGAAG---TTTTCCAAATGTGT----TACA-------AG----------CATAGTTTCTCTCAACACT i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 120740 51 - 3408981 GC--TCAGATGAAG---TTTTCCAAATGAAC----TGCA-------AG----------CATAACCTTTCTCAATACT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 81032 51 + 154172 GC--TCAGATGAAG---TTTTCCAAAAGTAT----TATA-------AG----------CATAGCCTCTTTCAATACT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_177942 3462 51 - 3798 GC--TCAGATGAAG---TTTTCCAAAAATAT----TATA-------AG----------CATAGCCTCTCTCAATCCT i choHof1.scaffold_177942 C 0 C 0 s xenTro2.scaffold_1263 87591 51 + 112973 GCTTTCGCATGAAA---CTTTTCCCACATTCCGTGCACA-------TG----------AATGGTTTCTCCC------ i xenTro2.scaffold_1263 C 0 n 0 s oryLat2.chr17 11138595 49 + 31848461 -C--ATAGATGAAG-GCTTTCTTACAAATGT----CACA-------GG----------AATAAGGCCTCtc---acc i oryLat2.chr17 I 187 I 10 s tetNig2.chr18 158959 59 - 11077504 -G--GTCGTCGTGG-GTGTTCCTCGTACGGT----AACA-------GACCTGCAGGTCAGtaagatcctcc---tcc i tetNig2.chr18 I 3 I 2 s petMar1.Contig11358 15127 54 + 15648 --------gcaaag-gccttcccacacacaa----tgcacttgaaggg----------tgtttctcctgtgtgtatt i petMar1.Contig11358 C 0 N 0 e danRer6.chr4 43821090 0 - 71658100 C e gasAcu1.chrXIII 16805505 30295 + 20083130 T a score=414200.000000 s hg19.chrUn_gl000223 95898 48 + 180455 CTCAAGCTC-ATCTTGATTGTTCTGGTACCATTCTTCCC-----AGCCATCTAC s panTro2.chr12 221120 48 - 135371336 CTCAAGCTC-ATCTTGATTGTTCTGGTACCATTCTTCCC-----AGCCATCTAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3907 48 - 4218 CTCAAGCTC-ATCTTGATTGTTCTGGTACCATTCTTCCC-----AGCCATCTAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260409 48 - 136387465 CTCAAGCTC-ATCTTGATTGTTCTGGTACCATTCTTCCC-----AGCCATCTAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232397 48 - 134511895 TTCAAGCTC-ATCTTGATTGTTCTGGTACCATTCTTCCC-----ACCCATCTAC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 893 48 + 5244 TTCAAGCTC-ATCTTGATTTTTCTGGTACCATTCTCCCC-----AGCCTTCTAG i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14119 48 - 39946 TTCAAGTTC-ATCTTGATCTTTCTGGTACCATTCTTCCC-----AGCCTTCTAG i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41815 48 - 57811 TTCAAAGTC-ATCTTGACTTTTCTGGTACCATTCTTCCC-----AGCCTTCTAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276773 48 + 667635 TTCAAGTTC-ATCTTGATTTTTCTGGTACCATTCTTCCC-----AACCTTTCAA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 696986 48 + 1032594 TTCAAGCTC-ATCTTGATTTTTCTGGTACCATTCTTCCC-----AGCCTTCTAG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29993679 48 - 76506943 TTCAAATTC-ATTATGATTTTTCTGGTACCATTCTTCCC-----AACCGTCTAA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168516 48 - 94057673 TTCAAGCTC-ATCCTGATTTTTCTGGTACCATTCTTTCC-----AACCTTCTAG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214462 48 + 42029645 TTCAAACTC-ATCTTGACTTTTCTGGTACCACTCTTTCC-----AACCTTCTAG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 10177 48 - 12560 TTCAAGCTC-ATCTTGATTCTTCTGGTACCATTCTTTCC-----AATCTTCTAG i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 120791 48 - 3408981 TTCAAGCTC-ATCTTGATTTTTCTGGTACCATTCTTCCC-----AACCTTCTAG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 81083 48 + 154172 TTCAAGCTC-ATCTTGATTTTTCTGGTACCATTCTTCCC-----AGCCTTCTAG i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_177942 3513 38 - 3798 TGTAAGCTC-ATCTTGATTTTTTTGGTGCCATTCCTCCA--------------- i choHof1.scaffold_177942 C 0 C 0 s tetNig2.chr18 159020 36 - 11077504 ------ctc-ttctttacA-----------GATGTGCTGGTGCGAAAACTCTGG i tetNig2.chr18 I 2 I 2 s oryLat2.chr17 11138654 43 + 31848461 ------ctc-atgtgaacATTTAAGG----AATAATTTtgagcaaaacattttt i oryLat2.chr17 I 10 I 3 s danRer6.chr4 43821090 30 - 71658100 ------CTCAATTTTAACAT----------GATGTTCCT--------CCTCTTT i danRer6.chr4 C 0 I 29 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I a score=-20328.000000 s hg19.chrUn_gl000223 95946 28 + 180455 AAAAAA-----A--CAAACAAAATATAA-CTTTTTG s panTro2.chr12 221168 28 - 135371336 AAACAA-----A--CAAACAAAATATAA-CTTTCTG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3955 28 - 4218 AAAAAA-----A--CAAACAAAATATAA-CTTTTTG i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260457 28 - 136387465 AAAAAA-----A--CAAACAAAAGATAA-CTTTTTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232445 27 - 134511895 AAA-AA-----A--CAAACAAAAGATAC-CTTTTTG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 941 29 + 5244 AAAAAA-----AACAAAATAAAACATA--CTTTTCA i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14167 27 - 39946 AAAAAA-----A--CAAATAAAACATA--CCTTTCA i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41863 24 - 57811 AAAAAA-----A---GTCCAAAACAT----TTTTTA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276821 26 + 667635 GAAAAA-----A-----ACAATACAAAACCATTCAG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 697034 18 + 1032594 AAACAA-----A-----ACAAAACACAC-------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29993727 28 - 76506943 GAAAAA-----A--AAAACAACATAGTA-ATTTAAA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168564 23 - 94057673 GGAAAA-----A--AACACG-----GCA-TTTTTAA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214510 33 + 42029645 GAAAAATAAATA--TACATGTATATATA-TTTTTAA i canFam2.chr26 C 0 I 1 s myoLuc1.scaffold_130229 10225 17 - 12560 AAAGAA-----A--AATA------------TTTTAA i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 120839 25 - 3408981 ---AAA-----G--AAAAAGAAACCATA-CTTTTTG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 81131 28 + 154172 AAAAAA-----G--AAAAATAAACTATA-CTTTTTG i dasNov2.scaffold_7587 C 0 C 0 s tetNig2.chr18 159058 26 - 11077504 AGATAT-----A--TTAAAAA--CTTAA-CTTCTCC i tetNig2.chr18 I 2 C 0 s fr2.chrUn 287918318 28 + 400509343 ggataa-----a--aaaaaagattttaa-ctTTGAA i fr2.chrUn N 0 C 0 s oryLat2.chr17 11138700 26 + 31848461 aaactt-----c--aCAAGAA--TAAGG-CTTTTcg i oryLat2.chr17 I 3 N 0 s danRer6.chr4 43821149 28 - 71658100 AAATAA-----A--TAAATAAACGTTAG-TTTTCAT i danRer6.chr4 I 29 I 2 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_177942 3551 0 - 3798 C a score=84007.000000 s hg19.chrUn_gl000223 95974 59 + 180455 AATCATAACATAAACCTGATATGGAATTAA-ACAGTAT-----------T---AGGACTGT----GAT-------------------------------------------GTA----ATCAACC s panTro2.chr12 221196 59 - 135371336 AATCATAACATAAACCTGATATGGAATTAA-ACAGTAT-----------T---AGGACTGT----GAT-------------------------------------------GTA----ATCAACC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 3983 59 - 4218 AATCATAACATAAACCTGATATGGAATTAA-ACAGTAT-----------T---AGGACTGT----GAT-------------------------------------------GTA----ATCAACC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260485 59 - 136387465 AATCATAACATAAATCTGATATGGAAATAA-ACAGTAT-----------T---AGGACTGC----GAT-------------------------------------------GTA----ATCAACC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232472 59 - 134511895 AATCATAACATAAACCTGATATGGAATTAA-ACAGTAT-----------T---AGGACTGT----CAT-------------------------------------------GTA----ATCAACC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 970 57 + 5244 AATCATAACATGAACTTGACATGGAATTAA-AGAGCTT-----------T---AGAACTGC----CAA-------------------------------------------GTA----ATGAG-- i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14194 38 - 39946 AATCATAAAATGAACTTGTTATGGAATTAA-AGAGTTT-----------T--------------------------------------------------------------------------- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 41887 50 - 57811 A---ATAACATTAATCTGTTATGGAATTAA-ACAACTT-----------T---AGAACTGC----TAT-------------------------------------------ATG----A------ i tupBel1.scaffold_103331.1-57811 C 0 I 1185 s cavPor3.scaffold_248 276847 114 + 667635 AGTTTTAAAAT---TCTGATATAGAATTGA-AATACGTTTCAAAATACCT---AAAGTTGTATAGTATGCATAAGGCTTTTTACTTCAATACACAGACAAAAAAAAAAGCAGTA----GTGAGTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 697052 58 + 1032594 --TTTAAACAT---TCTGATACAGAATTAA-AGAGCTT-----------T---AGAACTGCTTGCCAT-------------------------------------------GTG----ATGATTC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29993755 57 - 76506943 AATCATAA-ATAAACCTGAT-TAGAATTAA-AACACTT-----------T---AGAACTGC----TAT-------------------------------------------TTA----ATGAGTG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168587 59 - 94057673 AATCACAGTATGAACCTGACATGGAATTAA-ACAGCTT-----------T---AGAACTGC----CGC-------------------------------------------ATA----ATGAGTC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214544 56 + 42029645 CATCA----ATGTAGCTGATATGGGATTAAGAGAGCTA-----------T---AGGACTGC----CAT-------------------------------------------GTA----ATGAGTC i canFam2.chr26 I 1 C 0 s myoLuc1.scaffold_130229 10242 57 - 12560 AATCATAACATGAACTTAATATAGAATGAA---AGTTT-----------T---AGAACTGC----CAT-------------------------------------------GTA----GTGAGTC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 120864 59 - 3408981 AATCATAACATGTACCTTATATGAAATTAA-AGAACTT-----------T---AGAACTCC----CAT-------------------------------------------GTA----GTAAGTC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 81159 59 + 154172 AATCATAACATGAGCCTGATCTAGATTTAA-AGTGCTT-----------T---GGAACTGC----CAT-------------------------------------------GCA----GTCAGTC i dasNov2.scaffold_7587 C 0 C 0 s tetNig2.chr18 159084 59 - 11077504 ----ACAAAAAACTTGGAGTTAATAAGGAA-ATTTGAT-----------T---ATGATTTC----GAG-------------------------------------------AAAGTGTCTCTGCA i tetNig2.chr18 C 0 C 0 s fr2.chrUn 287918346 62 + 400509343 ----ACATCATACAGGCCTTAGATATGCAG-AGTTCAG-----------TGACATGTTTAC----TGG-------------------------------------------AACATTACGCAGCC i fr2.chrUn C 0 C 0 s danRer6.chr4 43821179 49 - 71658100 --AGTCTTAAAAACTCTCATCAAAACACAC-ACACAAT---------------GTAATTTT----GAT-------------------------------------------GCA----------- i danRer6.chr4 I 2 N 0 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_177942 3551 0 - 3798 C a score=68684.000000 s hg19.chrUn_gl000223 96033 27 + 180455 TTTCTCTTTT----GGTAACAAGCCTACCAC s panTro2.chr12 221255 27 - 135371336 TTTCTCTTTT----GGTAACAACCCAACCAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 4042 27 - 4218 TTTCTCTTTT----GGTAACAAGCCTACCAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260544 27 - 136387465 TTTCTCTTTT----GGTAACAAGCCTACGAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232531 27 - 134511895 TTTCTCTTTT----GGTAACAAGTCTACCAC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 1027 25 + 5244 --TCTCTGTC----GGTAACAAGACTATGAC i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14232 13 - 39946 ------------------ACAAGCTTATGAC i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 43122 18 - 57811 TTTTCTTTTT----GGTAAC---------AC i tupBel1.scaffold_103331.1-57811 I 1185 C 0 s cavPor3.scaffold_248 276961 31 + 667635 TTCTTCCTTTTTTAGGTAACAGGCCTAGGAC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 697110 27 + 1032594 TTTTTCTTTT----GGTAATAGGTTGATATC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29993812 26 - 76506943 TTTTTCTTCT----GGT-CCAGGCCTCTGAC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168646 27 - 94057673 TTTTTATTTT----GGTAACAGGCCTCTGGC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214600 27 + 42029645 TTTTTTTCTT----GATAACAGGCCTCAGAC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 10299 25 - 12560 TTTTCCTCTG----GTT--CTGGCCTCTGAC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 120923 27 - 3408981 TTTTTCTTTT----GGCAACAGGTATACAAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 81218 17 + 154172 -TTTTCTTTT----GG---------TATGTT i dasNov2.scaffold_7587 C 0 C 0 s tetNig2.chr18 159143 14 - 11077504 -----------------AGTAACTCAAAGAC i tetNig2.chr18 C 0 I 5 s fr2.chrUn 287918408 27 + 400509343 TTGAATTGTA----GATAGTAAACCAACTGC i fr2.chrUn C 0 N 0 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_177942 3551 0 - 3798 C a score=103866.000000 s hg19.chrUn_gl000223 96060 44 + 180455 -----ACTGGTTCAAAAGA---AATACTG--GCCAAGCA--------------------------TGGGGGCA-AGGGAAC s panTro2.chr12 221282 44 - 135371336 -----ACTGGTTCAAAAGA---AATACTG--GCCAAGCA--------------------------TGGGGGCA-AGAGAAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 4069 44 - 4218 -----ACTGGTTCAAAAGA---AATACTG--GCCAAGCA--------------------------TGGGGGCA-AGGGAAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260571 47 - 136387465 -----ACTAGTTCAAAAGATTCCATATTG--GCCAAGCA--------------------------TGGGGGCA-AGGGAAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232558 44 - 134511895 -----ATTGGTTCAAAAGA---AATACTG--GCCAAGCA--------------------------TGGGGGCA-AGGGAAC i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 1052 44 + 5244 -----ACTAGTTCAAAAGA---CATATTG--GACAAGCA--------------------------TAGGGGTG-AAGGAAC i micMur1.scaffold_67426 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14245 44 - 39946 -----ACTGGTTCAAAGGA---AATATTG--GACAAGCA--------------------------CTGGGGTG-AAGGAGC i otoGar1.scaffold_78004.1-39946 C 0 C 0 s tupBel1.scaffold_103331.1-57811 43140 36 - 57811 -----TTTGAT-----------GACCCTG--GCCAAACA--------------------------TGGGAGTA-AGGGAAC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 276992 44 + 667635 -----ATGGGTTCAGATGA---AGTACTG--GTCAACAA--------------------------AAGGGGCA-AGGGTAC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 697137 42 + 1032594 -----ACTGATTCAAAAGA---AATATTA--CTGATCGA------------------------GCAGGGAGTA-AGA---- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29993838 70 - 76506943 -----AATGGTTCAAAAGA---AATAATG--GCCAAGTGCACACACACACCATA-TAACCAAGTGTGGGGGCAAGGGGAAG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168673 65 - 94057673 -----GCTAGCTCAAAAGG---AATCCTG--GCCAAGTG--TACACACGCCACA-TACCTAAGCACGGGGG---AGAGAAG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214627 68 + 42029645 -----ACTGGCTCAAAAGA---AATACTG--GCCAGGCC--TACATGTGCCATA-TATCTGAGCTTTGGAGCACAAGGAAC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 10324 67 - 12560 -----ACTGGTTC-AAAGA---AATATTG--GCCAAGTG--CACCTGCGCCATA-GATCTAAGCATGGGGGTGAAGGGAAC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 120950 68 - 3408981 -----ACTGGTTAAAAAGC---AACATCG--GCCAGCTG--CACATGTGACACACCATGTAGGCGAGGGAGCA-AGGGGAA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 81235 63 + 154172 -----GTTGATTCAAAAGA---AATACTA--GCCAAGTG--TACATGGGCCATATTAT-----CAAGGAGGCC-TGAGAAC i dasNov2.scaffold_7587 C 0 I 6 s tetNig2.chr18 159162 36 - 11077504 ATAAGACTTACAGATATAA---AATATCAGTGCAAAGCC------------------------------------------ i tetNig2.chr18 I 5 N 0 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_177942 3551 0 - 3798 C a score=22723.000000 s hg19.chrUn_gl000223 96104 21 + 180455 TGAATCAAAACAAACCAAAAC s panTro2.chr12 221326 21 - 135371336 TGAATCAAAACAAACCAAAAC i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 4113 21 - 4218 TGAATCAAAACAAACCAAAAC i gorGor1.Supercontig_0208698 C 0 C 0 s ponAbe2.chr12 260618 21 - 136387465 TGAATCAAAACAAACCAAAAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232602 21 - 134511895 TGAATCAAAACAGACCAAAAT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 1096 21 + 5244 TGAATCAGACAAAACCACAAC i micMur1.scaffold_67426 C 0 C 0 s tupBel1.scaffold_103331.1-57811 43176 21 - 57811 TGAATCAAACCAAACCAAAAC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 277036 16 + 667635 TGAATCTAA-----CCAGACT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 697179 15 + 1032594 -GAGCCTGA-----ATTGAAA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29993908 16 - 76506943 TGAATCAAA-----CCACAAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64168738 16 - 94057673 TGACTCCAA-----CTAGACC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3214695 11 + 42029645 TGAGTC----------AAACC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 10391 16 - 12560 CGAATCAAA-----CCAAACC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 121018 20 - 3408981 CACATAGAACCATTCCAAAC- i loxAfr3.scaffold_113 C 0 I 1 s dasNov2.scaffold_7587 81304 19 + 154172 -TTACCAAACCAACCCAAAT- i dasNov2.scaffold_7587 I 6 I 1 s choHof1.scaffold_41126 7504 19 - 11325 -caacaaaacaaaaacaaaa- i choHof1.scaffold_41126 n 0 n 0 s otoGar1.scaffold_78004.1-39946 14289 7 - 39946 --------------CCACAAC i otoGar1.scaffold_78004.1-39946 C 0 C 0 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I a score=165052.000000 s hg19.chrUn_gl000223 96125 81 + 180455 AGGTCCCGTC----GTGAAAACTGGTAGCAAATTACCAGTAATC-AAAAATACTTTT-------TAAAATAGAGGTTTAAAATTGGCACTTGG s dasNov2.scaffold_7587 81324 52 + 154172 AATTCCTCTT----ATAGAAATGGATAGTGAATTAGAAATGATT-AAAAATGGTTTT------------------------------------ i dasNov2.scaffold_7587 I 1 I 3594 s loxAfr3.scaffold_113 121039 78 - 3408981 AATTCCTCTC----ATGGATATGAGTAGTGAATTACTAATGACC-AAAAATGGCTTTTAGTGTTTAAAATTGAGGTTTAAAAT---------- i loxAfr3.scaffold_113 I 1 I 159 s myoLuc1.scaffold_130229 10407 42 - 12560 AAGTCCCATT----GTGGAAATGGGTAGCAAATTAGCAGTGACA-AA---------------------------------------------- i myoLuc1.scaffold_130229 C 0 I 948 s canFam2.chr26 3214706 67 + 42029645 AAATCCCATT----ATGGAAATGGGTCGCAAA-TAGCAGTGATC-AAAAATGGTTTT-------TAAAAGACAGGCTTAg------------- i canFam2.chr26 C 0 I 871 s equCab2.chr8 64168754 70 - 94057673 AAGGCCCATG----ATGGAGATGGGAAGCGAATTGGCAGCGATC-AAAAATGATTTT-------TAAAAGAGAGGTTTAAAA----------- i equCab2.chr8 C 0 I 178 s bosTau4.chr17 29993924 69 - 76506943 AAATTCCTCT----ACAGAAATGGGTAGCTGATAAGCAGTGATG-AGAAGTATTTTT-------TATATAGAAGTTTAAAA------------ i bosTau4.chr17 C 0 I 978 s oryCun2.chrUn0106 697194 52 + 1032594 AGGTCCCCTC----ATGGAAACTGGTAGTGAATCAGCAGAAATC-AAAATTGCTTTT------------------------------------ i oryCun2.chrUn0106 C 0 I 4590 s cavPor3.scaffold_248 277052 83 + 667635 AGATCTCTTCTTGTTTGTGAGATGGTAGTGAATTAATGGTAGTAGAAAAATATTTTT----------GACAGGTTTTTCAAAAAAGGGTTAGG i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 43197 55 - 57811 AAGTCCTCTT----ATGAAAACTGAAAGTCAA-TAGCAGTGatt-aaaaaaattttt-------taaa------------------------- i tupBel1.scaffold_103331.1-57811 C 0 I 6461 s otoGar1.scaffold_78004.1-39946 14296 69 - 39946 AGGGCTCCTG----ATAAATGCTGGCAGCAAATTAGCAGCGTTC-AGAAATGATTTT-------TAAATTAGAGGTTTAAA------------ i otoGar1.scaffold_78004.1-39946 C 0 C 0 s micMur1.scaffold_67426 1117 49 + 5244 AGGTCTCCTC----ACAAAT--TGATAACAAATTAGCTGTAATC-AAAAATGGTTT------------------------------------- i micMur1.scaffold_67426 C 0 C 0 s rheMac2.chr11 232623 80 - 134511895 AGGACCC-TC----GTGAAAACTGGCAGCAAATTACCAGTAATC-AAAAATAGTTTT-------TAAAATAGAGGTTTAAAACTGGCACTTGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 260639 81 - 136387465 AGGTCACCTC----GTGAAAACTGGTAGCAAATTACCAGTAATC-AAAAATAGTTTT-------TAAAATAGAGGTTTAAAATTGGCACTTGG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0208698 4134 81 - 4218 AGGTCCCGTC----GTGAAAACTGGTAGCAAATTACCAGTAATC-AAAAATCGTTTT-------TAAAATAGAGGTTTAAAATTGGCACTTGG i gorGor1.Supercontig_0208698 C 0 N 0 s panTro2.chr12 221347 81 - 135371336 AGGTCCCGTC----GTGAAAACTGGTAGCAAATTACCAGTAATC-AAAAATAGTTTT-------TAAAATAGAGGTTTAAAATTGGCACTTGG i panTro2.chr12 C 0 C 0 s danRer6.chr22 9994602 44 + 41415389 ----------------------TATTAGCAAA-TATCAACATTT-TAAAGCACTCAT-------TTGAATAAGGG------------------ i danRer6.chr22 N 0 I 14780 e vicPac1.scaffold_12056 2718 0 - 46154 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I a score=40356.000000 s hg19.chrUn_gl000223 96206 91 + 180455 attagccaggcatggtggcgggcacctgtaatcccagctacta-gggaagctgaggcagaagaatcgcttgaacctgggaggcggaggttgc s panTro2.chr12 221428 91 - 135371336 attagccaggcatggtggcgggcacctgtaatcccagctacta-gggaagctgaggcagaagaatcgcttgaacctgggaggcggaggttgc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 260720 91 - 136387465 attagccagacatggtggcaggcacctgtaatcccagctacta-gggaggctgaggcaggagaatcacttgaacctgggaggcggaggatgc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232703 91 - 134511895 attagccaggcatggtgacgggcacccgtaatcccagctacta-gggaggctgaggcaggagaatcacttgaactcgggaagcagaggttgc i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_67426 1166 36 + 5244 -TAggccaggcat-gtggctcacacctgtaatcctagc------------------------------------------------------ i micMur1.scaffold_67426 C 0 n 0 s cavPor3.scaffold_248 277135 56 + 667635 ATTAG---------AGTTCTcatacctat-atcccagg-actctgggaggctaaagcaataggattg------------------------- i cavPor3.scaffold_248 C 0 I 3518 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14365 0 - 39946 C e loxAfr3.scaffold_113 121117 159 - 3408981 I e danRer6.chr22 9994646 14780 + 41415389 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64168824 178 - 94057673 I e canFam2.chr26 3214773 871 + 42029645 I a score=17496.000000 s hg19.chrUn_gl000223 96297 33 + 180455 agtgagc-----------------cgagatcacgccac--------tacaccaagtac s rheMac2.chr11 232794 33 - 134511895 agtgagc-----------------cgagatcgtgccac--------agcaccaagtac i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 260811 33 - 136387465 agtgagc-----------------caagatcacgccac--------tgcaccaagtac i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 221519 33 - 135371336 agtgagc-----------------cgagaccatgccac--------tgcaccaagtac i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 121276 58 - 3408981 agtgagccataagaaagttatgggcaagaacatcccaaatggaaggaacagcaagtac i loxAfr3.scaffold_113 I 159 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_67426 1202 0 + 5244 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14365 0 - 39946 C e danRer6.chr22 9994646 14780 + 41415389 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64168824 178 - 94057673 I e canFam2.chr26 3214773 871 + 42029645 I a score=42598.000000 s hg19.chrUn_gl000223 96330 60 + 180455 aaagttcctgaggaa--gaagcctgactgacagggtttaagaaatagaaaaaggccaggaaa s otoGar1.scaffold_78004.1-39946 14365 13 - 39946 AAAATT------------AAGCTTG------------------------------------- i otoGar1.scaffold_78004.1-39946 C 0 C 0 s rheMac2.chr11 232827 60 - 134511895 aaagttcctgaggag--gaagcctgactgacagagtttaagaaatagaaaaaggccaggata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 260844 60 - 136387465 aaagttcctgaggag--gaagcctgactgacagggtttaagaaatagaaaaaggccaggaaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 221552 60 - 135371336 aaagttcctgaggag--gaagcctgactgacagggtttaagaaacagaaaaaggccaggaaa i panTro2.chr12 C 0 C 0 s equCab2.chr8 64169002 52 - 94057673 ----------AGGAGCAGGAGCCTGCTTGTCATGGTTAGGAATGAGAAAAACGGCCAGGACA i equCab2.chr8 I 178 C 0 s loxAfr3.scaffold_113 121334 60 - 3408981 aaagttcctgaggta--ggagcctgcttggcatggttaataaagggaaaaaaggccaggata i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_67426 1202 0 + 5244 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e danRer6.chr22 9994646 14780 + 41415389 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e canFam2.chr26 3214773 871 + 42029645 I a score=52321.000000 s hg19.chrUn_gl000223 96390 77 + 180455 gctaaaacccactgagtgaatggaatgaaagca-gaaccaaat--tattcaaatccatggcaaaaagttgttcatatttt s loxAfr3.scaffold_113 121394 74 - 3408981 cctaagactcact-agtgaagacagtgaaggcaagaaccaaat--tatacaagaccatggtaaaatgct-tccatt--tt i loxAfr3.scaffold_113 C 0 I 2558 s canFam2.chr26 3215644 65 + 42029645 GCTAAAACCCACTGAGTGAACAGAGTG-AGGCAGGAACCAAATAGGGAGCA-----------AAAAGTT-CTCATCTT-- i canFam2.chr26 I 871 I 4 s equCab2.chr8 64169054 72 - 94057673 GCTCACACCCACTGAGTGAACAGAGAGAAGGCAGGAGCCAAAT--GAAGCAAGGCCATGG-GAAAAGCT-CTCTCA---- i equCab2.chr8 C 0 I 1027 s otoGar1.scaffold_78004.1-39946 14378 35 - 39946 ---------CACTCAAGGAGTCAAGTG-----------CCAAT--T-----------------------Atttatttttt i otoGar1.scaffold_78004.1-39946 C 0 C 0 s rheMac2.chr11 232887 76 - 134511895 gctaaaacccactgagtgaat-gaatgaaagca-gaaccaaat--tattcaaaaccatggcaaaaagttctttacatttc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 260904 77 - 136387465 gctaaaacccactgagtgaatagaatgaaagca-gaaccaaat--tattcaaaaccatggcaaaaagttgtttatatttt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 221612 77 - 135371336 gctaaaacccactgagtgaatggaatgaaagca-gaaccaaat--tattcaaatccatggcaaaaagttgtttatatttt i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_67426 1202 0 + 5244 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e danRer6.chr22 9994646 14780 + 41415389 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I a score=12858.000000 s hg19.chrUn_gl000223 96467 28 + 180455 taaga----------tttttttttttttt--gagacaggg s panTro2.chr12 221689 28 - 135371336 taaga----------tttttttttttttt--gagacaggg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 260981 38 - 136387465 taagatttttttttttttttttttttttt--gagacaggg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232963 29 - 134511895 taaga---------ttttttttttttttt--gagacaggg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_13183 42234 16 + 44925 ---------------tttattgttgtttttc--------- i micMur1.scaffold_13183 n 0 I 34 s otoGar1.scaffold_78004.1-39946 14413 28 - 39946 taa------------tttatttttattttttgagacagag i otoGar1.scaffold_78004.1-39946 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e danRer6.chr22 9994646 14780 + 41415389 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215709 4 + 42029645 I a score=18385.000000 s hg19.chrUn_gl000223 96495 54 + 180455 tc-ttgctctttcactcaggctggagtgcagtggcgcaatcttggct---tactgcag------ s panTro2.chr12 221717 54 - 135371336 tc-ttgctctttcactcaggctggagtgcagtggcgcaatcttggct---tactgcag------ i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 261019 54 - 136387465 tc-ttgctctgtcacccaggctggagtgcagcggcacaatcttggct---cactgcag------ i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 232992 55 - 134511895 tctttgctctgtcatccaggctggagtgcagtggagcaatcttggct---cactgcag------ i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14441 50 - 39946 cc-tcaagctgccccctgggtgg-agtgtcgtggc---atcacagct---catagcaa------ i otoGar1.scaffold_78004.1-39946 C 0 C 0 s danRer6.chr4 38753280 42 + 71658100 -------attttctgattggtgg---------------atcatacgtaggtaatgtagaaccag i danRer6.chr4 n 14780 C 0 s micMur1.scaffold_13183 42284 31 + 44925 ------------------------aatacagtggcacgatcatagct---cactgcaa------ i micMur1.scaffold_13183 I 34 I 52 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215709 4 + 42029645 I a score=33349.000000 s hg19.chrUn_gl000223 96549 52 + 180455 cctcgacctcctgggttcaagtaatcctcccatgtcagattcctgagtagct s panTro2.chr12 221771 52 - 135371336 cctcgacctcctgggttcaagtaatcctcccatgtcagattcctgagtagct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 261073 52 - 136387465 cctccatctcctgggttcaagtaatcctcccatgtcagattcctgagtagct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 233047 51 - 134511895 cctagacctcctgggttcaagtgatcct-ccatgtcagattcctgagcagtt i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_78004.1-39946 14491 52 - 39946 cctccaactcttgggcttaagtgagtctcctccctcagcctcccaagtagct i otoGar1.scaffold_78004.1-39946 C 0 C 0 s danRer6.chr4 38753322 52 + 71658100 ccatgttcaatcataatcacgtgattctctcaaaattagtttataaataaac i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 42315 52 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215709 4 + 42029645 I a score=83831.000000 s hg19.chrUn_gl000223 96601 135 + 180455 gggactacaggcacatgccatcatgcccagctaatttt------------tgtatttttagtagagatggggtttcacttgttggccaggctggtctcaaactcctgagctcaagcgatccgcccgccttggcctcccacagtactg s panTro2.chr12 221823 135 - 135371336 gggactacaggcacatgccaccatgcccagctaatttt------------tgtatttttagtagagatggggtttcacttgttggccaggctggtctcaaactcctgagctcaagcgatctgcccgccttggcctcccacagtactg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 261125 135 - 136387465 gggactacaggcacatgccaccatgcccagttaatttt------------tgtatttttagtagagatggggtttcacttgttggccaggctagtctcaaactcttgagctcaagcgatccgcccgccttggcctcccacagtactg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 233098 135 - 134511895 gggactatacgcactcgccaccacacccagctaatttt------------tgtatttttagtagagatggggtttcacttgttggccaggctggtctcaaactcctgagctcaagcgatccgcccgcctttgcctcccacagtgctg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_13183 42367 113 + 44925 aagactatagtcgtgtgccatcacacttggctaatttt------------taaatcttttgta----------------------ccaggcttgtatccaactcataggctgaagagatcctccagcttcagcctcctgagtagctg i micMur1.scaffold_13183 I 52 I 463 s otoGar1.scaffold_78004.1-39946 14543 98 - 39946 gggaccacaggtacccactacaacacccagttattttttgtTTGCAGCTATAGTTGTTTAGCAG-------------------GCCCAGGCTGGATTCGAACCTGCCAGCTCAGGTG------------------------------ i otoGar1.scaffold_78004.1-39946 C 0 I 24518 s danRer6.chr4 38753374 115 + 71658100 ttcactttaagagtttacc------cttatttgatgat------------tg-attataagcaa-------gtttgacatgctgtccagggag-----agagccctgagctcaaaaggtccttgagccctgggctccctcccattt- i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215709 4 + 42029645 I a score=14752.000000 s hg19.chrUn_gl000223 96736 31 + 180455 ggattacaggtgtgagccactgtgcccagcc s panTro2.chr12 221958 31 - 135371336 ggattacaggtgtgaaccactgtgcccagcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 261260 31 - 136387465 agataacaggtgtgagccactgtgtccagcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 233233 31 - 134511895 ggattacaggcgtgagccactgtgcccaacc i rheMac2.chr11 C 0 C 0 s danRer6.chr4 38753489 29 + 71658100 gcagagcgagaggggagctctgagctcag-- i danRer6.chr4 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 42480 463 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215709 4 + 42029645 I a score=69358.000000 s hg19.chrUn_gl000223 96767 128 + 180455 taaagg-ttttaattacagaaaatctcaatc----ttctgcatttaaaagatcagtttgactgtt---------ctgtaaaa----agtaagaaaaggacagagaaatactttaggaagctattgtagcagtccagaatgagataa s rheMac2.chr11 233264 126 - 134511895 taaaggtttttaattacagaaaatctcagtc----ttctgcatttaaaagatcagtttgactgtt---------ctgtaaaa----agtaagaaaagggcagagaaatactttagacagttattgcagcagtccagaatgag---a i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 261291 129 - 136387465 taaaggtttttaattacagagaatctcagtc----ttctgcatttaaaagatcagtttgactgtt---------ctgtaaaa----agtaagaaaaggacagagaaatactttaggaagctactgtagcagtccagaatgagataa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 221989 128 - 135371336 taaagg-ttttaattacagaaaatctcaatc----ttctgcatttaaaagatcagtttgactgtt---------ctgtaaaa----agtaagaaaaagacagagaaatactttaggaagaaagtgtagcagtccagaatgagataa i panTro2.chr12 C 0 C 0 s canFam2.chr26 3215713 134 + 42029645 -AAGGGGTTTCAATTAGAGGACATCTTGATTTGTGTTGTACTTTTAAAAGAT--GTTTGGCTGTT---------TTGTAAGAAATGAGTAAGAAAAGGGCTAAAAGACAAATGAGAAAGCCCTTGTAGTAGTGCAGGAAGACATCA i canFam2.chr26 I 4 C 0 s danRer6.chr4 38753518 123 + 71658100 -gtagg-tctcg-----agaactccccaaaa----tgctctgctcggcacagcagcctcgtatttgaagaacccccccaaaa----ggcaaatgaagatcaatgcaaaacct--ggctgc--ttgtagaag-caaaaatgtga--- i danRer6.chr4 C 0 n 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 42480 463 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I a score=197250.000000 s hg19.chrUn_gl000223 96895 384 + 180455 taatttgaactacagttcttgatatactttgggtatctgtccccacccaagtctcatgttgaattagaatctctagtgctggaggtggggcctggtgggaggtgcctgcatctggattatgggggcagatccctcatggcttggtgcagtcttcacgatagtgagttcttgtgagatctggtcatttgatagtatgtggcacattccccgccccgccttactcctgctttcaccatgtgatgtgcttgctccccctttgccttccactatgaccggagctacctgagacctccctagaagcaaaggctgccatgcttcccatacagcctgcagaactctgagccaattaaacctcttttcttataaatt---tagtctcaggtgttt s rheMac2.chr11 233390 386 - 134511895 taatttgaactaCACTTCTtgatatactttggatacctattcccgcccaagtctca-gttgaattataatctcccatgctggaggtggggcctggtgggaagtgttcacatccggatcacaggagcagatccctcatggcttggtgcagtcttcatgatagtgagttcttgtgagatctggtcatttgatattatgtggcacattccccgcctcttcttgctcctgctttcaccatgtgatgtgcctgctcccgctttgacttccactatgaccggagctacctgagacctccccagaagcaaatgttgccatgcttcccatacagcctgcagaactctgagccaattaaacctcttttcttataaattacctagtctcaggtgttt i rheMac2.chr11 C 0 I 448 s ponAbe2.chr12 261420 387 - 136387465 taatctgaactatagttcttgatatactttggatatctgtccccgcccaagtctcatgttgaattagaatctccagtgctggaggtggggcctggtgggaggtgtctgcatctggattatgggggcagatccctcatggcttggtgcagtcttcatgatagtgagttcttgtgagatctggtcatttgatagtatgtggcacattccccgccccctcttgctcctgctttcaccatgtgacatgcctgctccccctatgccttccactatgaccggagctacctgagacctccccagaagcaaatgctgccatggttcccatacagcctgcagaactctgagtcaattaaacctcttttcttataaattacctagtctcaggtgttt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 222117 384 - 135371336 taatttgaactacagttcttgatatactttggatatctgtccccgcccaagtctcatgttgaattagaatctctagtgctggaggtggggcctggtgggaggtgtctgcatctggattatgggggcagatccctcatggcttggtgcagtcttcacaatagtgagttcttgtgagatctggtcatttgatagtatgtggcacattccccgccccgccttactcctgctttcaccatgtgacgtgcttgctccccctttgccttccactatgaccggagctacctgagacctccccagaagcaaaggctgccatgcttcccatacagcctgcagaactctgagccaattaaacctcttttcttataaatt---tagtctcaggtgttt i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 42480 463 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215847 0 + 42029645 C a score=121085.000000 s hg19.chrUn_gl000223 97279 305 + 180455 -ttc--ttttttttttttttttttttgagatggagtctcgctctgttgcccaggctg----gagtgcagtggcacgatctcggctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacaccccgctaattt---------------------------------tttgtatttttagtagagacggggtttcaccatgttagtcaggatggtctccatctcctggccttgtg--atccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccagcca s ponAbe2.chr12 261807 303 - 136387465 -cttctctttttttttttttttttctgagatggagtctcgctctgttgcccaggctg----gagtgcagtggcgtgatctcggctcactgcaagctctgcctcctgggttcaagccattctcctgcctcagcctcccgagtagctgggactacaggc----gccaccacgccccgctaattt---------------------------------tttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctggctttgtg--atccacccgtctcggcctcccaaagtgttgggattacaggcgtgagccactgcgcccggcca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 222501 304 - 135371336 -ttc---tttttttttttttttttttgagatggagtctcgctctgttgcccaggctg----gagtgcagtggcacgatctcggctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggcgcctgccaccacaccccgctaattt---------------------------------tttgtatttttagtaaagacggggtttcaccatgttagtcaggatggtctccatctcctggccttgtg--atccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggcca i panTro2.chr12 C 0 C 0 s micMur1.scaffold_13183 42943 334 + 44925 attt---atttatttatttattttttgagacagagtcttgctttgttgcccaggctagaatgagtgccatggcatcagcctagctcatagcaacctccaactcctgggctcaagcaatccttctgcctcagccttccgagtagctgggactacaggcatgcaccaccatgcctggctcattttttctatatatattagttggccaattaattttctttctatttatagtagagatggggtcttgc--tcttgatcaagctggtttcgaactcctgaccttgagcaatccacctacctcggcctcccagagtgct--------aggcgtgagcgactgcgcccagcca i micMur1.scaffold_13183 I 463 n 463 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e rheMac2.chr11 233776 448 - 134511895 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215847 0 + 42029645 C a score=15582.000000 s hg19.chrUn_gl000223 97584 55 + 180455 gtctcaggtatttctttatagcaatgaaagaatggcctaacacatgtctggagtt s ponAbe2.chr12 262110 55 - 136387465 gtctcaggtatttctttatagcaatgaaagaatggcctaacacatgtctggagtt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 222805 55 - 135371336 gtctcaggtatttctttatagcaatgaaagaatggcctaacacatgtctggagtt i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_1263 87642 0 + 112973 I e choHof1.scaffold_41126 7523 0 - 11325 I e rheMac2.chr11 233776 448 - 134511895 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I e canFam2.chr26 3215847 0 + 42029645 C a score=34111.000000 s hg19.chrUn_gl000223 97639 128 + 180455 gaggaaatttggaacatacgggagagagaactaagatggtttgctaagggactagatgtggg--ag--cagagaaggggaggagtcaaCA--------------GCTTGAACGGCAAGATGGCACTG-CTCCTTAG----AGATGGAAACA s canFam2.chr26 3215847 122 + 42029645 GAGTGTAtctgaaa------------agaaccaagaaaatctaccaaaggactggatgaaga--aggcgagagatggggatgctttaagaactctagattttaggcttgtgaaacagg--ggtgctg-ctctctga----gta-------- i canFam2.chr26 C 0 C 0 s ponAbe2.chr12 262165 128 - 136387465 gaggaaatttggaacatacgggagagagaactaagatggtttgctaagggcctggatgtggg--ag--cagagaaggggaggagtcaaca--------------gcttgaacggcaagatggcactg-ctccttag----agatggaaaca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 222860 128 - 135371336 gaggaaatttggaacatacgggagagagaactaagacggtttgctaagggactggatgtggg--ag--cagagaaggggaggagtcaaca--------------gcttgaacggcaagatggcactg-ctccttag----agatggaaaca i panTro2.chr12 C 0 C 0 s xenTro2.scaffold_38 3802068 115 - 3962478 -------------------GGGTGAAAGAA-GAAGAATGCTCGCAACAGAATTTAATACAGACTAG--TGGGGAATGTTGGGAGTTAAGG--------------GACCAGTTAATAGGTTAGAGTAGACTAGTTGGGATAGGATGAGAACA i xenTro2.scaffold_38 n 0 I 3 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e choHof1.scaffold_41126 7523 0 - 11325 I e rheMac2.chr11 233776 448 - 134511895 I e cavPor3.scaffold_248 277191 3518 + 667635 I e bosTau4.chr17 29993993 978 - 76506943 I e equCab2.chr8 64169126 1027 - 94057673 I a score=10245.000000 s hg19.chrUn_gl000223 97767 49 + 180455 CTAAGAA-------AGAAACTTGTGAAAGAA--AATGAAGGACTCTGGCCATTTCTTT s panTro2.chr12 222988 49 - 135371336 ctaagaa-------agaaacttgtggaagaa--aatgaaggactcTGGCCATTTCTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262293 47 - 136387465 ctaagaa-------agaaacttgtggaagaa--aatgaagGA--CTGGCCATTTCTTT i ponAbe2.chr12 C 0 C 0 s bosTau4.chr17 29994971 24 - 76506943 CCAAAAA-------AGAAAATGGTGGGAAAA--------------------------- i bosTau4.chr17 I 978 I 1 s canFam2.chr26 3215969 32 + 42029645 --------------agagaatgtttggaagaaaaatgaagga------------cttt i canFam2.chr26 C 0 I 1299 s xenTro2.scaffold_38 3802186 56 - 3962478 CTAATCATCTTAGTTGTTACTGGTGAAAGAA--AGGGACAGATTTTGCCAATATTGCT i xenTro2.scaffold_38 I 3 n 3 e dasNov2.scaffold_7587 81376 3594 + 154172 I e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_12056 2718 0 - 46154 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 43252 6461 - 57811 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e loxAfr3.scaffold_113 121468 2558 - 3408981 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e choHof1.scaffold_41126 7523 0 - 11325 I e rheMac2.chr11 233776 448 - 134511895 I e cavPor3.scaffold_248 277191 3518 + 667635 I e equCab2.chr8 64169126 1027 - 94057673 I a score=60375.000000 s hg19.chrUn_gl000223 97816 46 + 180455 TGAGGAAGAACGGTAATTTT----AGA---AGGAAA-----TCCCCATTTCTGATACT s equCab2.chr8 64170153 49 - 94057673 TGAGGAAGAAGAGTGATTTT----GGAACGAGTTCC-----TTCCCATTTCTGAAACG i equCab2.chr8 I 1027 C 0 s bosTau4.chr17 29994996 46 - 76506943 TGAAGAGGAAGAGCAATTTC----AGA---AGTGTC-----TTCCAATTTCTGCCACT i bosTau4.chr17 I 1 C 0 s vicPac1.scaffold_260752 665 46 - 875 TGAGGAAGAAGAGTAATTTC----AGA---AGTGCC-----TTCCCAGTCCCGCTACT i vicPac1.scaffold_260752 n 0 C 0 s cavPor3.scaffold_248 280709 51 + 667635 TAGGGAAAAATGCTGTCTTT----GCA---AGAAAAGTTCCTTCCCATTTCTGATGCC i cavPor3.scaffold_248 I 3518 C 0 s panTro2.chr12 223037 46 - 135371336 TGAGGAAGAACGATAATTTT----AGA---AGGAAA-----TCCCCATTTCTGATACT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262340 46 - 136387465 TGAGGAAGAACGGTAATTTT----AGT---AGGAAA-----TTCCCATTTCTGATACT i ponAbe2.chr12 C 0 C 0 s dasNov2.scaffold_7587 84970 35 + 154172 ---------------ATTTTAGAAGGA---AATTAA-----TTTCCATTTCTGATACT i dasNov2.scaffold_7587 I 3594 C 0 s loxAfr3.scaffold_113 124026 44 - 3408981 -GAGGAAG-ATGGTTATTTT----GGA---AGTTAA-----CCCCCATTTCCGAAACT i loxAfr3.scaffold_113 I 2558 C 0 s tupBel1.scaffold_103331.1-57811 49713 48 - 57811 --AGGAAGAATGGTCATTTT----AGA---AGGAAA-TTCCTTCCCATTTCTGATACA i tupBel1.scaffold_103331.1-57811 I 6461 C 0 s canFam2.chr26 3217300 16 + 42029645 -----------------------------------------TTCACATTTCTGCTAC- i canFam2.chr26 I 1299 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_78004.1-39946 14641 24518 - 39946 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_38 3802242 3 - 3962478 I e choHof1.scaffold_41126 7523 0 - 11325 I e rheMac2.chr11 233776 448 - 134511895 I a score=113250.000000 s hg19.chrUn_gl000223 97862 97 + 180455 GAGAGTAAAGTCTGGGAAAGC-G----TGGGGTAGCGCTCCCACAGGCAGGTAAAACCCAGGACTCAAGTGCCAA---AGAGAAA---------GACGTCAATTTTG--------------------------ATGTTAC s ponAbe2.chr12 262386 93 - 136387465 GAGAGTAAAGTCTGGGAAAGC-A----TGGGGTAGCGCTTCCACAGGCAGGTAAAACTCAGGACTCAAGTGCCAA-------AAA---------GACGTCAATTTTG--------------------------ACGTTAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 223083 97 - 135371336 GAGAGTAAAGTCTGGGAAAGC-G----TGGGGTAGCGCTCCCACAGGCAGGTAAAACCCAGGACTCAAGTGCCAA---AGAGAAA---------GACGTCAATTTTG--------------------------ACGTTAC i panTro2.chr12 C 0 C 0 s otoGar1.scaffold_27471.1-844 346 99 - 844 AAGAATTAAAACTGAGAAAGC-A----CAGGGGAGCTTTCCTGAAGGTGTAAAAAACCTAATACTCAAGTGCAAC---AGAAAAAGAGGAAGATGATGACAAttttg--------------------------------- i otoGar1.scaffold_27471.1-844 n 24518 I 294 s rheMac2.chr11 234224 73 - 134511895 -----------------------------GGGTAGCGCGCCTACAGGCAGGTAAAACCCAGGACTCACGTGCCAA---AGAGAAA---------GACCTCAATTTTG--------------------------ATGTTAC i rheMac2.chr11 I 448 C 0 s tupBel1.scaffold_103331.1-57811 49761 126 - 57811 GAGATTAAAGTCTGGGAAAGA-A----GAGGGGAGCTCTCCTGCAAGCATATAAAACCCAGGACTCAAGTAAGAAAAAAGAAAAG---------GATGTCACTTTTGTCAACACTGTTGTCAAAATGCTGACAACGTTAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 280760 93 + 667635 -AGAGTGAAGTTTTGGAAATT-A----CAGGGGAGCTCTCTTGCAGATGCA-AAGACCAAGTACAGCAGAAACAG---AAGAAAA---------GA--TCATATTTG--------------------------CTGTTAA i cavPor3.scaffold_248 C 0 C 0 s vicPac1.scaffold_260752 711 106 - 875 GAGGATGCAGAGTGGGAAAGC-ACAGGGGAGGG---TCTCCCGCAAGCACAGAAAGC-CAGGAACAGAGTGCAGA---ACGGAAAGAGGAGGAGGATGTCCACTGTG--------------------------TGGTCGC i vicPac1.scaffold_260752 C 0 C 0 s bosTau4.chr17 29995042 101 - 76506943 GAGAATGCAGAATGGGAGATC-A----AGAGCT---CTGTCCTGAAGCATATAAAGC-TGGAACCAGAGTGCAGG---AAGAAGAGAGGAGG-GGATGACAGCTCTG--------------------------CTGTTAC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3217316 89 + 42029645 ------------TGAGGAAGC-C----TGGGGA---TCTTTTACATGCATTTAACCTGAGGGACAGGAGTGCAGA---AG-AAAAGAGGATGAGGATACC-CATGGG--------------------------ATGTTAC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64170202 104 - 94057673 GAGAATGAAGAGTGGGAAAGC-A----TGGGGG--CTGTCCTGCAAGGAGGTAAAACCCAGGACCAGAAGGCAGA---AGAAAAAGGGGATGAGGATGTCAAATTTG--------------------------ACGTTAC i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 124070 103 - 3408981 GAGGTTGAAGACTGGGAAAGCAC----ACAGGGAGCTGTTCTGCAGGCACAT-GAACCCAGGAGCCCAGTGCAGA-----GAAAAGAGGATGAGGACGT-AACTGTA--------------------------ATGTTAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 85005 103 + 154172 AAGACTGAAGTGTGGGAAAGC-C----ATGGAGAACTGTTCTGCATACTTACAAAACACAGGGCTACAGTGCTGA------AGAAAAGGATGAGGATGTCAATTCGG--------------------------ATGTCAC i dasNov2.scaffold_7587 C 0 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_38 3802242 3 - 3962478 I e choHof1.scaffold_41126 7523 0 - 11325 I a score=78332.000000 s hg19.chrUn_gl000223 97959 62 + 180455 AACAC-T----GGGGGG---AAAGC----GTAAACCTTCGGAA-CGGAAGAG-CCTTTCGAC--AGTTACAACATTCG-- s panTro2.chr12 223180 62 - 135371336 AACAC-T----GGGGGG---AAAGC----GTAAACCTTCGGAA-CGGAAGAG-CCTTTCGAC--AGTTACAACATTCG-- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262479 60 - 136387465 AACAC-------GGGGG---GAAGC----GTAAACCTTCGGAA-CGGAAGAG-CCTTTCGAC--AGTTACAACATTCG-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234297 57 - 134511895 AACAC-T----GGGGTG---AAAGC----TTAAACCTTCAGAA-TGGA--AG-TCTTTCGAC--AGTTACAACAT----- i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_27471.1-844 739 64 - 844 AACAC-T----GAAGGGAAAAAAGC----TTAAATCTTCACAA-TGGAAAAG-CTTTTCAAT--ACTCACAACAT-AG-- i otoGar1.scaffold_27471.1-844 I 294 C 0 s tupBel1.scaffold_103331.1-57811 49887 62 - 57811 AGCAC-TGGTGGGGGAG---GGAGT----TTAAATCTTCAGAA-TGGAACAG-TCTTTCAAT--AGTTACAATA------ i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 280853 55 + 667635 AACAG-T----GGGGAG---A---T----TTCAATCTTCAGAA-TGAAGGAG-GCACTCAAT--AGTTATAACA------ i cavPor3.scaffold_248 C 0 C 0 s vicPac1.scaffold_260752 817 52 - 875 AAGGC-T----GGGAAG---GAAAAAAGCTTCCACTGTCATTA-TGGAAGAG-CCTTCCAAC------------------ i vicPac1.scaffold_260752 C 0 n 0 s bosTau4.chr17 29995143 62 - 76506943 AACAC-T----GGGCAG---AAAAAG---TTCAATTTTCAGGA-TGGAAGAGTCCTTCCAG---AGTTACGATA-TAG-- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3217405 65 + 42029645 AACAT-G----GGAGAA---AAAAAG---CTGAAATCTCCCAAGTGGAAAAG-CCCTTCAGC--TGTTACAGTA-CTGGC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64170306 63 - 94057673 AACATGG----GGAGAA---AAAAAG---CTGAAATTTCAGAA-TGGAAAAG-CCTTTCAGT--ACTTACAACA-TGG-- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 124173 61 - 3408981 AACAC-T----GGGAGA---AGAAACC--GCTAATCTTCAGAA-AGGAAGAG-CTGCTCAATGGAGTTACAAT------- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 85108 63 + 154172 -ACAG-T----AGGAGT---AAAAGGC--TTAATTCTTCAGAA-CGGAAGAG-GCTTGCAATAGAGTTACAACA----GA i dasNov2.scaffold_7587 C 0 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 697246 4590 + 1032594 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e xenTro2.scaffold_38 3802242 3 - 3962478 I e choHof1.scaffold_41126 7523 0 - 11325 I a score=8342.000000 s hg19.chrUn_gl000223 98021 44 + 180455 GAGAGGA---------GAGCC--------AAACTGGGAAAAAATACCC------------CTCTGGACAACGC s panTro2.chr12 223242 44 - 135371336 GAGAGGA---------GAGCC--------AAACTGGGAAAAAATACCC------------CTCTGGACAACGC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262539 44 - 136387465 GAGAGGA---------GAGCC--------AAATTGGGAAAAAATACCC------------CTCTGGACAATGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234354 41 - 134511895 -AGGAGA---------GACCC--------AAACTGG--AAAAATACCC------------CTCTGGACAACGC i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_27471.1-844 803 41 - 844 GATAGGA---------CAGCC--------AAATCAGGAAACAA-ACCT------------CCTTGGACAAC-- i otoGar1.scaffold_27471.1-844 C 0 n 0 s cavPor3.scaffold_248 280908 52 + 667635 CAGAAGATGTTTCCACAGGCT--------GAGTGTAGAAAGCAAACTC------------CTTTGGTCCA-AC i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29995205 26 - 76506943 AGGAGA-----------AGCT--------CAAACT----------------------------TGGACAACTT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3217470 44 + 42029645 GAGAAAA---------CAGGT--------AGATTTGGGAAATAGACCC------------CTCTGGATGACTC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64170369 44 - 94057673 GAGAGAA---------CAGCT--------GAATTTGGGAAACAAAGCC------------CTTAGGACAAATT i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 124234 47 - 3408981 --ACAGA---------GAGTTATAATAAAGAATTTGGAAA--GAAACC------------CTTTGGGGAAC-T i loxAfr3.scaffold_113 C 0 I 11 s dasNov2.scaffold_7587 85171 43 + 154172 GGACAGA---------GAGCT--------GGTTTTGGAAAACAAAGTC------------CTCTGCAGATC-C i dasNov2.scaffold_7587 C 0 I 14 s xenTro2.scaffold_3 7498684 56 + 7514772 GAGATCA---------GAGAT--------ATATCTGAGGGAAATAACTTGGATTTTGTCATTATGAAAAATAA i xenTro2.scaffold_3 n 3 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_260752 869 0 - 875 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 49949 0 - 57811 C e oryCun2.chrUn0106 697246 4590 + 1032594 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T e choHof1.scaffold_41126 7523 0 - 11325 I a score=-121666.000000 s hg19.chrUn_gl000223 98065 12 + 180455 AAAAGGG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------TA s xenTro2.scaffold_3 7498740 12 + 7514772 AATAAGG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------GT i xenTro2.scaffold_3 C 0 C 0 s choHof1.scaffold_66145 1924 12 + 11585 AAGGAAG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------TA i choHof1.scaffold_66145 n 0 C 0 s dasNov2.scaffold_7587 85228 63 + 154172 GCAGAAGCCTACTAAGTTTTAAAGGGACCTCAAGCCTGGTCTGTTAATAGCACttaata-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tg---------------------------------------------------------------ta i dasNov2.scaffold_7587 I 14 C 0 s loxAfr3.scaffold_113 124292 18 - 3408981 GTAGGAGCCAAGG---------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------TG i loxAfr3.scaffold_113 I 11 C 0 s equCab2.chr8 64170413 304 - 94057673 GAAAGGG---------------------------------------------------AAGAGTAAGAGGAACCAGGAAATGTTAGGTGATAAAATCATTTAATGATACAGATGAGACCAGGCCAGGGTTCAGGATTCTTTTAAGAAAAGTGCCCGAGACTggaccagccccatggcctagtggttatgttcagtgtgctccactttggcagcccaggttccgttccagggcacgaacccacaccactcattggcacccatgttgaggtggcaactcacatacaaaatagaggaaaagtggcacagatgttagctcagggtgaatcttcctcagcaaaaaaaaaaCAGTGCCCAA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3217514 31 + 42029645 CAAAGGA---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTAAGAGGAGC-----------------------------CAGGAAA---------------TA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 29995231 36 - 76506943 GAAAGGG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAAAGAGTAAT-----------------------------CAGGGAAACAAA----------TA i bosTau4.chr17 C 0 C 0 s cavPor3.scaffold_248 280960 12 + 667635 AAAAGGT---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------TG i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 234395 12 - 134511895 AAAAGGG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------TG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 262583 12 - 136387465 AAAAGGG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------TA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 223286 12 - 135371336 AAAAGGG---------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------TA i panTro2.chr12 C 0 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_260752 869 0 - 875 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 49949 0 - 57811 C e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrXIII 16805505 30295 + 20083130 T a score=18156.000000 s hg19.chrUn_gl000223 98077 29 + 180455 TAAGGT-----GTGTAAAGTCA-CTCAAAGATATA s panTro2.chr12 223298 29 - 135371336 TAAGGT-----GTGTAAAGTCA-CTCAAAGATATA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262595 29 - 136387465 TAAGGT-----GTGTAAAGTCA-CTCAAAGATATA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234407 29 - 134511895 GAAGGT-----GTATAAAATCA-CTCAAAGATACA i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 280972 27 + 667635 -AAGGT------CACAAAAATT-CTCAGTGACATA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 29995267 29 - 76506943 TAAGGT-----GATAAAAACCA-CTTAAGGCTAGG i bosTau4.chr17 C 0 I 79 s canFam2.chr26 3217545 29 + 42029645 TAAGGT-----GATAAAAATCA-CTTCATGACACA i canFam2.chr26 C 0 I 46 s equCab2.chr8 64170717 30 - 94057673 GAAAGT-----AACAGTGATCAGCATAAGAAGAGA i equCab2.chr8 C 0 I 43 s loxAfr3.scaffold_113 124310 29 - 3408981 AAAGTT-----GTGTGAAAGCA-CTTAATAGTACA i loxAfr3.scaffold_113 C 0 I 139 s dasNov2.scaffold_7587 85291 34 + 154172 aaatatatataatataaaaGCA-CTTAATAACACA i dasNov2.scaffold_7587 C 0 I 152 s choHof1.scaffold_66145 1936 14 + 11585 AAATCT------CATAAAAG--------------- i choHof1.scaffold_66145 C 0 I 22 s xenTro2.scaffold_3 7498752 29 + 7514772 TCAAGT-----CATTAAAGTCA-TTTAAACTCAGG i xenTro2.scaffold_3 C 0 n 0 s gasAcu1.chrVI 14631476 29 - 17083675 TAAGGA-----TTGTGAAGCCC-ATCGAGGACACA i gasAcu1.chrVI n 30295 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e vicPac1.scaffold_260752 869 0 - 875 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 49949 0 - 57811 C e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I a score=-8422.000000 s hg19.chrUn_gl000223 98106 64 + 180455 ---------GGAGACA----CCAGGGCCAAGACTG------------------------------------------------TGAGTC-----------------AAGT-----CTAGGGGATTTAAC-----TGTGGAAGGCA------------AA--GGAGG- s panTro2.chr12 223327 64 - 135371336 ---------GGAGACA----CCAGGGCTAAGACGG------------------------------------------------TGAGTC-----------------AAGT-----CTAGGGGATTTAAC-----TGTGGAAGGCA------------AA--GGAGG- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262624 64 - 136387465 ---------GGAGACA----CCAGGGCTAAGACTG------------------------------------------------TGAGTC-----------------AAGT-----CTAGGGGATTTAAT-----TGTGGAAGGCA------------AA--GGAGG- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234436 64 - 134511895 ---------GGGGACA----TCAGGGCTAAGACTG------------------------------------------------TGAGTC-----------------AAGT-----CTAGGGGATTTAAC-----TGTGAAAGGCA------------AA--GGAGG- i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 280999 62 + 667635 ----------CATATA----CCAGTTGTAGGATCA------------------------------------------------TGGGTT-----------------AAAT-----CTAAGCAGTTTAAC-----AGTGGAA-GCA------------AA--AGGGC- i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64170790 56 - 94057673 ---------GGAAGTA------------AAGACTG------------------------------------------------TGGGTA-----------------AATT-----CTGAGGGATCTGCC-----TGAGGAAGGCA------------AA--AGAGA- i equCab2.chr8 I 43 C 0 s canFam2.chr26 3217620 108 + 42029645 ---------GAAAGTA------------AAAGCTAATTTTAAAAGGAGAGAAAAGAAAGCAATGTAATCTCTAAAAGTGATGTTGAGCA-----------------AAGGACTGACTGAGGGAT-TATC-----TGTGGAAAGCA------------AG--AGAGA- i canFam2.chr26 I 46 C 0 s bosTau4.chr17 29995375 74 - 76506943 ---------gggtatg------------agttcta--------------------------------tccc------------tggtcaaggaactaagatcctgcaag------ccatgaggtgtggc-------aaaaaagaa------------aa--aGAAA- i bosTau4.chr17 I 79 C 0 s vicPac1.scaffold_254083 212 54 + 905 ---------GGAAACG------------AAACCTG------------------------------------------------TGGGTA-----------------AAG------TTGAGGGATGTAAC-----T-GTGGAGGCA------------AG--AGAGA- i vicPac1.scaffold_254083 n 0 C 0 s loxAfr3.scaffold_113 124478 44 - 3408981 --------------------------------CTG------------------------------------------------TGAGTA-----------------CAGT-----CTAAGGAATTT-AC-----AGCAAAAAGCA------------AAAGAGA--- i loxAfr3.scaffold_113 I 139 C 0 s dasNov2.scaffold_7587 85477 43 + 154172 --------------------------------CTG------------------------------------------------CGGGTA-----------------AAGT-----CTAGGGGAGTCAAC-----AGCAGAAGTCA------------AA--AGA--- i dasNov2.scaffold_7587 I 152 C 0 s choHof1.scaffold_66145 1972 43 + 11585 --------------------------------TTG------------------------------------------------TGGCTA-----------------AGGT-----CTAAGGGAGTCAAG-----AGCAGAAGGCA------------AC--AGA--- i choHof1.scaffold_66145 I 22 C 0 s gasAcu1.chrVI 14631505 95 - 17083675 GTAGCAGTGGGACACAGGTCTCACGTGTGTGTGTG------------------------------------------------CGTGTA-----------------GGCC-----CTAGGGGATAAAACGGGTGTGGGGAGGACATCAACGTACTTGAA--AGAGGG i gasAcu1.chrVI C 0 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 49949 0 - 57811 C e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e xenTro2.scaffold_3 7498781 0 + 7514772 I a score=21395.000000 s hg19.chrUn_gl000223 98170 55 + 180455 -----AAAT---------AAAAGAAATGG-A------------------------------------------AATAGAGGGCAATGAGCCACATCAAG-----TGAGGGGAAAAAG s panTro2.chr12 223391 55 - 135371336 -----AAAT---------AAAAGAAACGG-A------------------------------------------AATAGAGGGCAACGAGCCACAGCAAG-----TGAGGGGAAAAAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262688 51 - 136387465 -----AAAT---------AAAAGAAATGG-A------------------------------------------AATA----GCAACGAGCCACATCAAG-----TGAGGGGAAAAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234500 55 - 134511895 -----AAAT---------AAAAGAAAGGG-A------------------------------------------AATAGAGGGCCACGAGCCACACCAAG-----TGAGGGGAAAAAG i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 281061 55 + 667635 -----AAAT---------CAAAGTAAAGG-A------------------------------------------AACAGAGGGGGATGAGTCTCACCAAG-----TGAGAGGAAGGAG i cavPor3.scaffold_248 C 0 C 0 s vicPac1.scaffold_254083 266 28 + 905 -----GAA----------AAATGCCCAGG-A-------------------------------------------------------------------------CCACAGGAAGGAA i vicPac1.scaffold_254083 C 0 C 0 s bosTau4.chr17 29995449 100 - 76506943 -----GAA----------AAGTGCTCAAG-AAGGTAAGAGTTGTAATTTCCAAATGACTAGTGTGAGAAGAGTGAAGGAA-GCAATGAAACCTCCTAAGATGGTCAAGAGAAGAGAA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3217728 54 + 42029645 -----AAGT---------CCACATATGGG-A------------------------------------------AGTAGAG-GGCGTGAGTCACGCAAAG-----GGATAGGAGAGAA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64170846 54 - 94057673 -----AAGT---------AAATGTAAGGG-A------------------------------------------TGCAGAG-GCCATGAATCACACCGAG-----TGAGAGGAAGGAG i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_108560 35 53 + 1390 -----aaa----------aaaaaaaaaag-a------------------------------------------atgtgag-ggCTTGAGTCACACCAAG-----TGAGAGAGGAGAG i sorAra1.scaffold_108560 N 0 C 0 s loxAfr3.scaffold_113 124522 45 - 3408981 -----AAAC---------AAATACAAGGGTA------------------------------------------GTAGAAGGGGCCTGAGTCAGACT--------------AAGAG-- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 85520 53 + 154172 -----AAAC---------AAAATTAAGGA-A------------------------------------------GTACAAGTGGCCTGAGTCACACCAAA-----TGAGGAAAGAG-- i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2015 53 + 11585 -----AAAC---------AAATATAATGA-A------------------------------------------GTTCAAGTGGTCTGAGTCACACCAAA-----TGAGGAAAGAG-- i choHof1.scaffold_66145 C 0 C 0 s gasAcu1.chrVI 14631600 69 - 17083675 AAAAAGAACGACGGGTAGAAAAGTAGGAG-A------------------------------------------AACAGATGGGGAGGGTTTCATTCAAT-----TGAAGGCTCAAAG i gasAcu1.chrVI C 0 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 49949 0 - 57811 C e oryCun2.chrUn0106 697246 4590 + 1032594 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e xenTro2.scaffold_3 7498781 0 + 7514772 I a score=-31613.000000 s hg19.chrUn_gl000223 98225 4 + 180455 A--------------------------AAT s panTro2.chr12 223446 4 - 135371336 C--------------------------AAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262739 4 - 136387465 A--------------------------AAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234555 4 - 134511895 A--------------------------AAT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 281116 4 + 667635 A--------------------------AAC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 701836 4 + 1032594 A--------------------------AAT i oryCun2.chrUn0106 I 4590 C 0 s vicPac1.scaffold_254083 294 1 + 905 G----------------------------- i vicPac1.scaffold_254083 C 0 C 0 s bosTau4.chr17 29995549 30 - 76506943 GGAGAAGACTGCAGGTAAAGTTGAGGGAAT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3217782 4 + 42029645 G--------------------------ATC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64170900 4 - 94057673 A--------------------------AAC i equCab2.chr8 C 0 C 0 s sorAra1.scaffold_108560 88 1 + 1390 A----------------------------- i sorAra1.scaffold_108560 C 0 C 0 s loxAfr3.scaffold_113 124567 4 - 3408981 --------------------------AAAA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 85573 4 + 154172 --------------------------AAAA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2068 4 + 11585 --------------------------AAAG i choHof1.scaffold_66145 C 0 C 0 s gasAcu1.chrVI 14631669 4 - 17083675 --------------------------AAAT i gasAcu1.chrVI C 0 n 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 49949 0 - 57811 C e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e xenTro2.scaffold_3 7498781 0 + 7514772 I a score=16619.000000 s hg19.chrUn_gl000223 98229 41 + 180455 CCTCTA-AAGGTCTCGATGCCC-AATA----AAACCCATGACCA------TGG s panTro2.chr12 223450 41 - 135371336 CCTCTA-AAGGTCTCGATGCCC-AATA----AAACCCATGACCA------TGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262743 41 - 136387465 CCCCTA-AAGGTCTTGATGCCC-AATA----AAACCCATGACCC------TGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234559 47 - 134511895 CCCCTA-AAGGTCTCGATGCCC-AATG----AAACCCATGACCATGACCGTGG i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 281120 25 + 667635 CCTTGG-AAGATCTTG---------------------TTCATCT------TGG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 701840 41 + 1032594 TCTCTG-CATGTTTTAATGCCT-AATA----ATGTGCTTGACCT------TGG i oryCun2.chrUn0106 C 0 C 0 s tupBel1.scaffold_103331.1-57811 49949 32 - 57811 ---------GACCTGGATTCCT-AACT----GGGGCCATGACCA------TG- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s vicPac1.scaffold_254083 295 6 + 905 -----GCAGAG------------------------------------------ i vicPac1.scaffold_254083 C 0 I 13 s bosTau4.chr17 29995579 42 - 76506943 TAACTGCAGAGGCAAAAGGGAA-AATA----AGGCCCATGACCA------CAG i bosTau4.chr17 C 0 I 14 s canFam2.chr26 3217786 41 + 42029645 TCTCTG-AGGGATGGACGGGCT-GAGG----TGGTCCATGACCA------CAG i canFam2.chr26 C 0 I 1 s equCab2.chr8 64170904 40 - 94057673 TCTCTG-A-AGACCCAGAGCCT-GATG----CAGTGCACGCCCA------TGG i equCab2.chr8 C 0 I 27 s sorAra1.scaffold_108560 89 40 + 1390 -CTCAG-ATGGTCTAGATATCC-AATG----CAGCCCATGACCT------tgg i sorAra1.scaffold_108560 C 0 I 2 s loxAfr3.scaffold_113 124571 45 - 3408981 TTTCTG-AAGGCTTGGATGCCT-AATAACAGAAGTTCATGACCA------TGG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 85577 46 + 154172 TCTCTG-AAGGCCTGGATGCCTAAAAAAAAGAAATCCCTGACCA------TGG i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2072 45 + 11585 TCTCTG-AAGGCTTGGATGCCT-AAAAAGAGAAATTCTTGACCA------TGG i choHof1.scaffold_66145 C 0 C 0 e myoLuc1.scaffold_130229 10449 948 - 12560 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e xenTro2.scaffold_3 7498781 0 + 7514772 I a score=75335.000000 s hg19.chrUn_gl000223 98270 35 + 180455 GGAGGACGGAAACTTACCCA-AAAGCAAA-CCTGAAG---- s panTro2.chr12 223491 35 - 135371336 GGAGGACGGAAACTTACCCA-AAAGCAAA-CCTGAAG---- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 262784 35 - 136387465 GGAGGAGGGAAACTTACCCA-AAAGCAAA-CCTGAAG---- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234606 35 - 134511895 GGAGGAGGCAAACTTACCCA-AAAGCAAG-CCTGGAG---- i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 281145 36 + 667635 GAAGGAAGGAAACTAATCCAGAAGGTGGG-TTCTGAG---- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 701881 36 + 1032594 GCAAGAAAGAAGCTAACCCAGAGCACACA-TATTGAG---- i oryCun2.chrUn0106 C 0 C 0 s tupBel1.scaffold_103331.1-57811 49981 33 - 57811 ---GGATGGGAACTAATACAGAAAGCAAA-CTTTGAA---- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s vicPac1.scaffold_254083 314 36 + 905 GAAGGAAGGAAACCAGCCCAGAAAGCAGC-ATTGGAG---- i vicPac1.scaffold_254083 I 13 n 13 s bosTau4.chr17 29995635 36 - 76506943 GAGGGAAGGAAACTAACCCAGAAAGCAAC-CTTTGAG---- i bosTau4.chr17 I 14 C 0 s equCab2.chr8 64170971 36 - 94057673 CAAGGAAGGAAACTAACCCAGAAAGCAAC-ACCTGTG---- i equCab2.chr8 I 27 C 0 s canFam2.chr26 3217828 35 + 42029645 -AAGGAGGGAAAATAACCCCGAAAGCAGC-ATCTAAG---- i canFam2.chr26 I 1 C 0 s myoLuc1.scaffold_130229 11397 36 - 12560 GAAGGAAGAAAACGAACCCAGAAAACAAT-ATTTGAG---- i myoLuc1.scaffold_130229 I 948 C 0 s sorAra1.scaffold_108560 131 37 + 1390 gggaaaaggaaagaaactaagaaaaaaatgagttaag---- i sorAra1.scaffold_108560 I 2 C 0 s loxAfr3.scaffold_113 124616 33 - 3408981 GAAGGAAGGCAG-------AGAAATAAAG-GTTGTGGGAAG i loxAfr3.scaffold_113 C 0 I 7 s dasNov2.scaffold_7587 85623 33 + 154172 GAAGGCGGGGAA-------GAAAATAAAG-GTGCTAGGAAG i dasNov2.scaffold_7587 C 0 I 14 s choHof1.scaffold_66145 2117 33 + 11585 GAAGGAAGGCAG-------AGAAATAAAA-GTGCTAGGAAG i choHof1.scaffold_66145 C 0 I 14 e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e xenTro2.scaffold_3 7498781 0 + 7514772 I a score=-122261.000000 s hg19.chrUn_gl000223 98305 198 + 180455 -----------------CAGAGTTCA-------GGAAAGAGGGGCATGCCTGCCTCTCAACAGTAAGG-GGGAAGAAAAAC-CCAAATATATGAAGAGTGACGGCGATGTCCTTATCTGAGG-AGCTCCTG-GCTTCATC--CTGAGTCAGCTCCAATAGCTCAA-GGAC----TTCCAGAA-GCATTTCTGA--AGAC--AACACTG-TG--AGTGCCCACTCCTCAGGTACTCATCAGC s choHof1.scaffold_66145 2164 204 + 11585 Caaaagcaaaatttgagcaaagttca-------gagaaaaggggtgtgctttcctctcaaagtca----agggaagaaagC-CTAAATATGTGAAGTGTGATGGTCAT---CTCATCTGAGA-ACCTCA---GATTCGTC--CTTAGTG----CCAG--GTTCAA-GGAC----CTTTAAGAAGAGTTTCAGT--ATAT--AACACTA-GATAAGGGCTGACACTTCACAGATCAACTAGA i choHof1.scaffold_66145 I 14 I 2 s dasNov2.scaffold_7587 85670 212 + 154172 CAAACACAAAATTTGAGC-ACGTTTA-------GAGAAGAGGCATATGCTTTCCTCTCAAAGTCA----AGGGAAGAAAGC-CTAAATA--TGAAGTGTGGCAGTCATTTCCTTATCTGAGG-AACTCATGTTATTTGTC--CTAAGTAAATTCAAT--GTTCAG-GGAT----GTTTAAGAAGAATTTCAAT--AAGC--AACAATGTGTTTAGGGCTAACACTTCACAAACCAACTGGA i dasNov2.scaffold_7587 I 14 I 2 s loxAfr3.scaffold_113 124656 182 - 3408981 CAACTGAGAA-----AGC-AAGATTT-------GAGCAAAGTTGGA------------GAAGCCA----AGGGAAGAAAAC-CCACATGTGTAGAA-ATGACAGTCATTT-CTTGTCTGAGG-CACTCATAGTATTTGTC--CTGAGTCAGCTTAGT--GTTTAGAGGAT----TTTTAAGA--ACTTTCCAT--ATAC--AATATCA-CATCAGTG-----ACTGTAAGAGT------GG i loxAfr3.scaffold_113 I 7 I 2 s sorAra1.scaffold_108560 168 132 + 1390 -----------------CAGAATGCA----------GAGAAAGGCAGGCCACTTCTCAAGCAG-------------AAAGCACCACATGGGAGAATGCCAATAGCCCCTTCTTCACCAGAGG-GGCTCCAA-GGAAGCCC--CCTA------TGTAATGCTGCTG-TG--------------------------------------TG-CCAGCATG-------------------CCAGC i sorAra1.scaffold_108560 C 0 N 0 s myoLuc1.scaffold_130229 11433 161 - 12560 -----------------CGGAGTGTA-------CAAAAGGAGGGCACGCCTCCCTTGCAG-AGCCAGA-GGTC--TGAAGC-CCAAACATGGGCAGAATGACAACCATTTCCTTACCTGAG--GACTAGCA-GGACCCCCGACCCCACCG--CATCATGGTTCAG-GGGC-----TTTAGAC-------------------AAAAGTG-TC-TACAC-------------------CCAGT i myoLuc1.scaffold_130229 C 0 I 2 s canFam2.chr26 3217863 151 + 42029645 -----------------CAGAGTCCCTCAGACCCATGAGAAG----------------------------------AAAGC-CCAAACATGGGCAGAGAGATGGTCCTTCCCCAA--GGAGCTAGCTTATA-AGTTCCTC--CCGAGTCG--CCCAATAGTTCAA-GGGCTCCAGTGTAGAG------TTTTC--ACAC--ACCACTG-CCCCACGG-------------------CCAGC i canFam2.chr26 C 0 I 6 s equCab2.chr8 64171007 146 - 94057673 -----------------CAGAGTGCA----------GAAAAGGGCACACCTGCCTCTC------------------AGAGC-CCAGGCCTGGGAAGAGTGACAGCCATTTCCTTATCTGAGC-AGCACGAG-GGCTCATC--CCAAGTTG-CCCCAAGGATTCAA-GGAC----GGCTAGGA-------------------AATACTG-CCGCAGAG-------------------CCAGC i equCab2.chr8 C 0 I 4 s bosTau4.chr17 29995671 151 - 76506943 -----------------CAGTGTGTA----------CAGAACAGCCCACCAGCCTCTT------------------GGAGT-C---ATGGGAGGAAAGTGATAGC-----CCTCACCTGAG--GACTCTTG-GGCTCATC--TTGAGCTG-CTCCAATGGTACAA-GAGG------TTAGAG-AACAGTTCCC--ACACATGACACTG-CCTGAATG-------------------CCAAC i bosTau4.chr17 C 0 I 5 s tupBel1.scaffold_103331.1-57811 50014 176 - 57811 -----------------CAGACTCTC-------TGCAAGC--------CCTG--------------GG-AAGAAAGGAAGC-CCATGGAAGTAAAGGAGGACAGTGATATCCTCATCTGAGG-AGCTCATG-CTTTCATC--CTGTGGCAGTTCCAGTGGTTCAA-GAAC----TCCTCAAG-GTGTCTCC----ACAC--AACACCG-TATCCATGCTAAGTCATGGAGGAACAACTAGT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s oryCun2.chrUn0106 701917 156 + 1032594 -----------------CACAA--------------AAAGTGGCACCGCCTACCTCTCAAAGCCAA---AGGAAGGAAAAC-CCCAATATGTGAAGAATGCTGGCGA-GTCCTTATGTGAAG-AGCCCAT------------------------------------GGTC----TCCTAAGA-GTTTCTGTGC----GT--AACGCTG-CACCAGTGTGACTTCCTCTGGGAACAACCAGG i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 281181 178 + 667635 -----------------CAACATTTA-------GGGAAGAGGACCATGCCCATCTCTAGGAGCCAGGATAGGAAGGGGAG--CCCAACATCTGAGGAATTCAGGTGG-CAGCTACTG-GATT-AACCCAT------------------CAGCCACATCCATTCAA-GGGC----TTTCCAGA-GCTTTTGTGCTCAGAT--GATATGG-TGCCGAGG-------CCCAAGGAGCAGCCAGT i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 234641 196 - 134511895 -----------------CAGAGTTCA-------GGGAAGAGGGGCCTGCCTGCCTCTCAACAGTGAGG-GGGA--GAAAAC-CCAAATATATGAAGAGTGACGGCGATTTCCTTATCTGAGG-AGCTCCTG-GCTTCATC--CTGAGTCAGCTCCAGTAGCTCAA-GGAC----TTCCAGAA-GAATTTCTGA--AGAC--AACACTG-CG--AGTGCCCACTCCTCAGGTACTCACCAGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 262819 198 - 136387465 -----------------CAGAGTTCA-------GGGAAGAGGGGCATGCCTGCCTCTCAACAGTAAGG-GGGAAGAAAAAC-CCAAATATATGAAGAGTGACAGCGATGTCCTTATCTGAGG-AGCTCCTG-GCTTCATC--CTGAGTCAGCTCCAGTAGCTCAA-GGAC----TTCCAGAA-GCATTTCTGA--AGAC--AACACTG-TG--AGTGCCCACTCCTCAGGTACTCATCAGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 223526 195 - 135371336 -----------------CAGAGTTCA-------GGAAAGAGGGGCAAGCCTGCCTCTCAACAGTAAGG-GGGAAGAAAAAC-CCAAATATATGAAGAGTGACGGCGATGTC---ATCTGAGG-AGCTCCTG-GCTTCATC--CTGAGTCAGCTCCAGTAGCTCAA-GGAC----TTCCAGAA-GCATTTCTGA--AGAC--AACACTG-TG--AGTGCCCACTCCTCAGGTACTCATCAGC i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e xenTro2.scaffold_3 7498781 0 + 7514772 I a score=3816.000000 s hg19.chrUn_gl000223 98503 36 + 180455 TCACTCCC--A-TGCCTCCCACCTTCCTC-TTTCTCACTC s choHof1.scaffold_66145 2370 34 + 11585 TGGACTCC--A-AGCCTCTCATCTTC-TGCATTCTCAC-- i choHof1.scaffold_66145 I 2 I 95 s dasNov2.scaffold_7587 85884 31 + 154172 TGAATTCT--ATAGCCTCCCATCTTCTTGTGTT------- i dasNov2.scaffold_7587 I 2 C 0 s loxAfr3.scaffold_113 124840 36 - 3408981 TTACCTCC--A-CGTCTCCCAGCATCCTG-GTCCTCACTC i loxAfr3.scaffold_113 I 2 C 0 s myoLuc1.scaffold_130229 11596 34 - 12560 --GCTCCC--A-CACCTCCTGTCTTCCTG-GCTCCCACGC i myoLuc1.scaffold_130229 I 2 C 0 s canFam2.chr26 3218020 28 + 42029645 TCATTCCG--A-CACCCCC--ATCTTC-------CTGCTC i canFam2.chr26 I 6 C 0 s equCab2.chr8 64171157 34 - 94057673 TTACTCCC--A-CACCTCC--CTTTCCCA-GTTGCTGCTC i equCab2.chr8 I 4 C 0 s bosTau4.chr17 29995827 35 - 76506943 TTACTCCC----CACCTCCCATCTTCATG-GTATCTGCTC i bosTau4.chr17 I 5 C 0 s tupBel1.scaffold_103331.1-57811 50190 34 - 57811 TTACTGCT--A-CACTTCCCACCCTCCTA-GTTCT--CTT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s oryCun2.chrUn0106 702073 36 + 1032594 TCACTTCT--A-CATCTCCCATCTTCCTG-ATTCTCATCA i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 281359 28 + 667635 T-----------TATTCCACAGCCTCCTG-GTTCTCACTC i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 234837 36 - 134511895 TCACTCCC--A-TGCCTCCCACCTTCCTC-ATTCTCACTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263017 35 - 136387465 TCACTCCC--A-TGCCT-CCACCTTCCTC-ATTCTCACTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 223721 36 - 135371336 TCACTCCC--A-TGCCTCCCACCTTCCTC-TTTCTCACTC i panTro2.chr12 C 0 C 0 s macEug1.Scaffold28539 6880 6 - 21048 ------------------------------GTTTTT---- i macEug1.Scaffold28539 N 0 N 0 s xenTro2.scaffold_1085 171348 32 - 187191 TCATTTTCTAA-TATTTTCATTCTTCTCT-GCTT------ i xenTro2.scaffold_1085 I 5009 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=698276.000000 s hg19.chrUn_gl000223 98539 101 + 180455 ACCCACCTGGACAGCTCTGCCTGGAAATTTTGGCATTTATTATCCATGGATCTTCTCCTTGTTCCAACTTGAAGATTAAGTCAGGCTTGGTACCATGATAC s panTro2.chr12 223757 101 - 135371336 ACCCACCTGGACAGCTCTGCCTGGAAATTTTGGCATTTATTATCCATGGATCTTCTCCTTGTTCCAACTTGAAGATTAAGTCAGGCTTGGTACCATGATAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263052 101 - 136387465 ACCCACCTGGACAGCTCTGCCTGGAAATTTTGGCATTTATTATCCATGGATCTTCTCCTTGTTCCAACTTGAAGATTAAGTCAGGCTTGGTACCATGATAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234873 101 - 134511895 ACCCACCTGGACAGCTCTGCCTGGAAATTTTGGCATTTATTATCCATGGATCTTCTCCTTGTTCCAACTTGAAGATTAAGTCAGGCTTGGTACCATGATAC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 281387 101 + 667635 ACCCACCTGCACACCTCTGAGTGGACATTTTGGCATTTATTATCCATGGCTCTTCTCCTTGCTCCATCTTGAAGATTAAATCAGGTTTATTACCATGATAC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 702109 98 + 1032594 ACTCACCTGGACAGCTCTGACTGGAAATTTTGGCA---ATTATCCATGGCTCTTCTCCTTGCTCCAACTTGAAAATTAAATCAGGCTTGGTACCATGGTAC i oryCun2.chrUn0106 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50224 101 - 57811 ACCCACCTGGACAGCTCTGACTGCAAATTGGGACATTTAGTATCCATGGTTCTTCTCCTTGCTCCAACTTGAAGATTAAATCAGGTTTGCTACCATGATAC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s bosTau4.chr17 29995862 101 - 76506943 ACCCACCTGGACAGCTCTGATGGGAAACCTCGAAGTTTATGATCCATGGCTCTTCTCCTTGCTCCAACTTGAAGATTAAATCAGGTTTGGTACCATGATAC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64171191 100 - 94057673 ACCCA-CTGGACAGCTCTGACGGGAAGCTCTGGCATTCACTATCCACGGCTCTTCTCCTTGCTCCAACTTGAAGATTAAATCAGGCTTTGTACCATGATAC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218048 101 + 42029645 ACCCACCTGGATAGCTCTGGCGGGAAACTTTGGCATTTATCATCCACGGCTCCTCTCCTTGCTCCAACTTGAAGATTAAATCAGGTTTGGTACCATGATAC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 11630 101 - 12560 ACCCACCTGGACAGCTCTGATGAGAAATTTTGGCATTTCCTATCCATGGCTCTTCTCCTTGCTCCAACTTGAAGATTAAATCAGGTTTGGTACCATGATAC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 124876 101 - 3408981 ACCCACCTGGACAGCTCTGACTGGACAGTTTGGCATTTATTGTCCACGGCTCTTCTCCTTGCTCCAACTTGAAGATTAAATCAGGTTTGCTACCGTGATAT i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 85915 100 + 154172 -CTCACCTGAACAGTTCTGGCTCGAAATGCTGGCATTTATTATCCATGGCTCTTCTCCTTGCTCCAACTTGAAGATTAAATCAGGTTTGGTACCATGATAT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_177942 3551 101 - 3798 ACCCTTCTGAACAGCTCTGACTGGAAATGTTGGCATTTATTATCCGTGGCTCTTCTCCTGGCTCCAACTTGAGGATTAAATCAGGTTTGGTACCATGATAT i choHof1.scaffold_177942 C 0 C 0 s xenTro2.scaffold_1085 171380 100 - 187191 ACCAAAGTGGAAAGATTT-CCTCTTATCCTTGTTATATGATAAACATGGATCTTCATCCCTCTCGATTCTAGATATTATGTCTGGTTTCTTGTGCAGATAA i xenTro2.scaffold_1085 C 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=165543.000000 s hg19.chrUn_gl000223 98640 45 + 180455 CCTGTTGATGG-GAAATCACAAAGGGTGGGGACCAGGCTGTTAGGG s panTro2.chr12 223858 45 - 135371336 CCTGTTGATGG-GAAATCACAAAGGGTGGGGACCAGGCTGTTAGGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263153 45 - 136387465 CCTGTTGATAG-GAAATCACAAAGGGTAGGGACCAGGCTGTTAGGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 234974 45 - 134511895 CCTGTTGATGG-GAAATCACAAAGGGTGGGGACCAGGCTGTTAGGG i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 281488 43 + 667635 CCTGTTAATGGAAAAATCACAATGGATGCAGGTCAA---GGTAAGG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 702207 45 + 1032594 CCTGTTAAAGG-AAAATCAAAAAGGATATAGACCAAACTGCCAGGG i oryCun2.chrUn0106 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50325 45 - 57811 CCTGTGAATGG-AAAATTGCAAAGGATATAGGCCAGATGGCTAGGG i tupBel1.scaffold_103331.1-57811 C 0 I 283 s bosTau4.chr17 29995963 42 - 76506943 CCTGTTAAGGG-AAAGTCATAGAGAATGT-AGTCAGACTGCTGA-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64171291 41 - 94057673 CCTGTTGATGG-AAAATCACAAAGGC--TCAGCCAAGCTGCTCG-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218149 43 + 42029645 CCTGTTAGTGG-AAAATCACAAAGGATGTGGGCCACGCTGCTAG-- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 11731 43 - 12560 CCTGTTAATGG-AAAATCACAAAGGATGTGGGCTAAACTGCTCG-- i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 124977 45 - 3408981 CCTGTTAATGG-AAAACCATAAAGGATTTGGGCCACACTGCTACGG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 86015 45 + 154172 CCTGTCAATGC-AAAATCACAAAAGATTTGGACCAAATTCTTAGCA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2499 45 + 11585 CCTGTTAATGC-AAAATCACAAATGATTTGGACGAAACTCTTAGCA i choHof1.scaffold_66145 I 95 C 0 s xenTro2.scaffold_1085 171480 21 - 187191 CCTG--------AA---CAGAAAAAGTGTGGA-------------- i xenTro2.scaffold_1085 C 0 N 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=-34037.000000 s hg19.chrUn_gl000223 98685 25 + 180455 ---ACAGGACCGA---GGAA------------------TCAAG------------------------AGCTAC s rheMac2.chr11 235019 25 - 134511895 ---ACAGGACCGA---GGAA------------------TCAAG------------------------AGCTAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263198 25 - 136387465 ---ACAGGACCGA---GGAA------------------TCAAG------------------------AGCTAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 223903 25 - 135371336 ---ACAGGACCGA---GGAA------------------TCAAG------------------------AGCTAC i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50653 49 - 57811 ---ACCGGGTCTG---GGAC------------------TCGAACCGCAGTCGACTACATGGGAATCCAGCGAC i tupBel1.scaffold_103331.1-57811 I 283 C 0 s cavPor3.scaffold_248 281531 25 + 667635 ---ATCAGACTAC---AGAC------------------TCACA------------------------AGCTAC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 702252 12 + 1032594 ---ATCAG----------------------------------G------------------------AGCTAC i oryCun2.chrUn0106 C 0 I 347 s bosTau4.chr17 29996005 22 - 76506943 ------GGACTAA---GAGG------------------TCAGG------------------------AGGGAG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64171332 14 - 94057673 ------TGAGCAGCATGAGG----------------------------------------------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218192 22 + 42029645 ------GGACTAA---GGGG------------------TCCAG------------------------ACCTAC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 11774 22 - 12560 ------GGATTGA---GACA------------------TCAGG------------------------AGCTAC i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 125022 45 - 3408981 ATTCAGGGAATCT---GAAG-ATGGGGAAGGCATGGCATCAGG------------------------AGCTAC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 86060 45 + 154172 A-TCAAGGATTCT---GAAGAAAGGGGAAGGTACAGCATCAGA------------------------AGATGC i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2544 46 + 11585 AGTAAGGGACTGC---GGAGAAAGGGGAAGGTATAGTAACAGG------------------------AGCTAC i choHof1.scaffold_66145 C 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=192038.000000 s hg19.chrUn_gl000223 98710 57 + 180455 AGAGCA-A-------AACTGCTCATCT-C---------ACTTGGGGAAAGATTACAATTAGGAAGTG--------------------------TGGGACAA s choHof1.scaffold_66145 2590 58 + 11585 AGAATG-A-------AACTGCTCATTTGC---------ACATGGGGAAAGATTTCAATTAGGAGGTG--------------------------AGAATTGA i choHof1.scaffold_66145 C 0 C 0 s dasNov2.scaffold_7587 86105 59 + 154172 AAAATGAA-------AACTGCTCATTTAC---------ACTTGGGGAAAGATTTCAATTAGGAGGCA--------------------------AGAACCAA i dasNov2.scaffold_7587 C 0 C 0 s loxAfr3.scaffold_113 125067 58 - 3408981 AAGACT-A-------AGCTGCTCATTTGC---------ACTTGGGGAAAGATTTCAGTTAGGAAGTG--------------------------AGAACCAA i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_130229 11796 58 - 12560 AACATG-A-------CACTGCTCATTTGT---------ACTTGGGAAGAGTTTACAATTAGGAGGTG--------------------------ATAGCCAA i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3218214 58 + 42029645 AAAACC-T-------AACTGCTCACTTGC---------ACTTGGGGGAGGATTATAGTTAGGGGATG--------------------------AGGGCCAA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64171346 51 - 94057673 ---------------AGCTGCTCCTCTGC---------ACTTGGGGAAAGATGACAATCAGGAGGTG--------------------------AGGGCCAA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29996027 57 - 76506943 GAAAGA-A-------AGCAGCTTGTTTGC---------ACTTGGGG-AAGATGACAGTGAGGAGCTG--------------------------AGGGTTCA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 702611 91 + 1032594 aaaaTG-A-------AACTGCTTATTT-T-TACACAGCAGTTGGGGAAAGATTACAATTAGGAGGTAAGAAAAACAACAACTACTAACAGGTGAGAGGCAA i oryCun2.chrUn0106 I 347 C 0 s cavPor3.scaffold_248 281556 58 + 667635 AAAATA-A-------AACGGATCATT---------AGTACTTAGAGAAAGATTATAACTAGGGGGTA--------------------------AGGGCCGA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50702 73 - 57811 ATAGCC-ATTATGCCAACTGTTGGTCC-CTAGCAAAAACCTCTTAAAAAAATTATAGTTAGAAGGTG--------------------------AGAGACAA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 223928 57 - 135371336 AGAGCA-A-------AACTGCTCATCT-C---------ACTTGGGGAAAGATTACAATTAAGAAGTG--------------------------TGGGACAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263223 57 - 136387465 AGAGCA-A-------AACTGCTCATCT-C---------ACTTGGGGAAAGATTACAATTAGGAAGTG--------------------------TGGGACAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235044 57 - 134511895 AGAGTA-A-------AACTGCTCATCT-C---------ACTTGGGGAAAGATTACAATTAGGAAGTG--------------------------AGGGACAA i rheMac2.chr11 C 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 38753641 0 + 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=181887.000000 s hg19.chrUn_gl000223 98767 73 + 180455 ACAGGGA-CTAAGGAAATTTGACCCCTA---AAGTTCAAG-TTCATAATCATT-AAGCACTTCAGAGATCCCGGAGTAG s rheMac2.chr11 235101 73 - 134511895 ATAGGGA-CGAAGGAAATTTGACCCCTA---AAGTTCAAG-TTCATAATCATT-AAGCACTTCAGAGATCCCAGAGTAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263280 73 - 136387465 ATAGGGA-CTAAGGAAATTTGACCCCTA---AAGTTCAAG-TTCATAATCATT-AAGCACTTCAGAGATCCCAGAGTAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 223985 73 - 135371336 ATAGGGA-CTAAGGAAATTTGACCCCTA---AAGTTCAAG-TTCATAATCATT-AAGCACTTCAGAGATCCCAGAGTAG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50775 73 - 57811 AAAGGGA-CACAAAACACTTGACCTCTG---AAGTTCAAA-TTAATAGTCACT-AAACACTTGAGAGGACCCACAGTAG i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 281614 73 + 667635 ATGAGGA-CCAAGAACATATGACATCTA---AAGTTCCTG-TTCACAGTCATA-AAATACTTTTGAGGACCCACGATAG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 702702 72 + 1032594 ACAAGGA-CTAAGAACATCTGACCGCTA---AAGTTCCAG-TTCATAAGCAT--CAGCACTTTGGAGGTCCCTCAATCA i oryCun2.chrUn0106 C 0 I 328 s bosTau4.chr17 29996084 42 - 76506943 GTAGGGG-CTAAAAACATGTGACCTCC------------------------------------AGAGGCTTCAGGGTAG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64171397 56 - 94057673 ACAGGGA------------------CTA---ATGTTCAAG-TCCACAATCATC-AAGTCCTTCAGAGGACCCAGGGCAA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218272 56 + 42029645 ATAGGGA-CCATGAGC-TTTGATCTCTA---AGGTTCAAG-CCCATAACCATT-AAAAACTTT---------------- i canFam2.chr26 C 0 I 211 s myoLuc1.scaffold_130229 11854 71 - 12560 ACAGGGA----TGAACACATGACCGCTA---AAGTTCATGCCCCATAATCATC-AAGTACTTCAGAGGCCCCAGGGTAA i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 125125 64 - 3408981 ATAGGGA-CTAAGAGCATTTGACCTCTA---AAGTTCAAG-TGCATAATCATT--AGCACTTCAGAGGCTA-------- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 86164 73 + 154172 AAAGAGA-TGAAGAACACTGGACCTCTG---AAGTTCAAG-CCCTT-ATCATTAAAGCACTTCAGAGGCCCAAAAGTAG i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2648 65 + 11585 ATAAGGA-TGAAGAACA-------TCTA---AAGTTCAAG-TCCCT-ATCATTAAAGCACTTCAGAAGCCC-CAAGTAG i choHof1.scaffold_66145 C 0 C 0 s danRer6.chr4 26584085 77 - 71658100 acagcgagtgaATAGCATTTGATTCAAATATAAGTTCAAA-TATATAATAATTTAAACAATCAAAAAGTACGGCTTGA- i danRer6.chr4 n 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=90121.000000 s hg19.chrUn_gl000223 98840 25 + 180455 TTCAACAACAAAAAAAGGGATGGCA s choHof1.scaffold_66145 2713 22 + 11585 ATC--AAAAAGGGAAAGGGAAAGC- i choHof1.scaffold_66145 C 0 C 0 s dasNov2.scaffold_7587 86237 25 + 154172 ATCAAAAAAAGGGAAAGGGATAGCA i dasNov2.scaffold_7587 C 0 C 0 s loxAfr3.scaffold_113 125189 20 - 3408981 -----CAAAAGAAAAGAGGATGGCA i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_130229 11925 24 - 12560 ATCAAC-AAAGGAAAAGGGATGGCA i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3218539 25 + 42029645 ATAAACAAAAGAAAAAGGGATGGTG i canFam2.chr26 I 211 C 0 s equCab2.chr8 64171453 25 - 94057673 ATCAACAAAATGAAAGTGGACGGCA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29996126 25 - 76506943 ATCAACAAAAGAAAAGGCAATGGTG i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 703102 25 + 1032594 tttaagaaaagaaaAAGGGTAAACA i oryCun2.chrUn0106 I 328 C 0 s cavPor3.scaffold_248 281687 25 + 667635 ATCAAGGAAAGAAAGGCAGATAGCA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50848 22 - 57811 AT---CACCAAAAGAAGAGATGGCA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 224058 25 - 135371336 TTCAACAACAAAAAAAGGGATGGCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263353 25 - 136387465 ATCAACAACAAAAAAAGGGATGGCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235174 25 - 134511895 GTCAACAACAAAAAAAGGGATGGCA i rheMac2.chr11 C 0 C 0 s danRer6.chr4 26584162 25 - 71658100 AACAAAGCAAGAAAGAGGGCTGACA i danRer6.chr4 C 0 n 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=121726.000000 s hg19.chrUn_gl000223 98865 43 + 180455 ATTTAATATTCACTATCTGA-----GTAAC-ATTGA-----GACGCAGTACTTA s choHof1.scaffold_66145 2735 43 + 11585 ATTTATGATTCATAATCTGC-----GTTAC-ATAAA-----GAAGCTGTACTTA i choHof1.scaffold_66145 C 0 I 80 s dasNov2.scaffold_7587 86262 43 + 154172 ATTTATGATTCACAATCTGA-----GTTAC-ACAGA-----GAAGCTGCACTTA i dasNov2.scaffold_7587 C 0 C 0 s loxAfr3.scaffold_113 125209 43 - 3408981 AGTTATGATTCACAGTCTCA-----GTTAA-ACAGA-----AAAGCTGTACTTA i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_130229 11949 40 - 12560 ACTCATGACTCAGAGTCT--------ATTA-ACAGA-----GAAGCTGTACTTA i myoLuc1.scaffold_130229 C 0 C 0 s canFam2.chr26 3218564 43 + 42029645 ATTTATAAATCACAACCTGA-----GATCA-ACAGA-----GAAGTGGCACTTA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64171478 43 - 94057673 ATTTAAAATTCACCATCTGA-----GCTAC-AGAGA-----GACACTGTCCTTA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 29996151 49 - 76506943 ACTTATGACTCATGATCTGG-----GCTTGTACAGGCTCATGAAGCTGTACTTA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 703127 43 + 1032594 ATTTACAAGTCACAATCTGA-----GTTAA-ACAGA-----GAAGCTGTGCTTA i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 281712 41 + 667635 ACTCATGA--CTTGACCTGA-----GACAG-GCAAG-----GAAGCTGCACTTA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50870 35 - 57811 AGTTATAGCCCAC-ATCTGA-----GTTAG-GAGGA------------CACTTA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 224083 43 - 135371336 ATTTAATATTCACTATCTGA-----GTAAC-ATTGA-----GATGCAGTACTTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263378 43 - 136387465 ATTTAATACTCACTATCTGA-----GTGAC-ATTGA-----GATGCAGTACTTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235199 48 - 134511895 ATTTATTACTCACTATCTGAGTGATGTGAT-GTTGA-----GACGGAGTACTTA i rheMac2.chr11 C 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=516353.000000 s hg19.chrUn_gl000223 98908 80 + 180455 CCCACTGATATCAGGTTATGATAGTTTTCCAATATCACATCTCTGTACAGGTACTTCTGTGTAGAATCCAGTAGCTGCCA s rheMac2.chr11 235247 80 - 134511895 CCCACTGATAACAGGTTATGATAGTTTTCCAATATCACATCTCTGTATAGGTACTTCTGTGTAGAATCCAGTAGCTGCCA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263421 80 - 136387465 CCCACTGATATCAGGTTATGATAGTTTTCCAATATCACATCTCTGTAGAGGTACTTCTGTGTAGAATCCAGTAGCTGCCA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224126 80 - 135371336 CCCACTGATATCAGGTTATGATAGTTTTCCAATATCACATCTCTGTACAGGTACTTCTGTGTAGAATCCAGTAGCTGCCA i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50905 80 - 57811 CCCACTGACACCCAGCTGTTATAGTTTTCCAACATCACATCTGTGTATAGGTGTTTCTGTGCAGAATTCAGTAGCTGCCA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 281753 80 + 667635 CCCACTGATAACAAATTGTTGTAGTTTTCCAGGGTCACCTCCCTGTACAAGTGCCTCTGTGCTGAATCCAGTAGCTGCCA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703170 80 + 1032594 CCCACTGATACCAGGTTGCTATAGTTTTCCAGGATCACATCCCTGTAAAGGTACTTCTGTGTAGAATCCAGCAGCTGCCA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29996200 80 - 76506943 CCTACAGACACCAGGTTACTATAGTTTTCCAGAGTCACATCCCGGTACAGGTGTTTCTGCACAGAATCAAGCAGCTGCCA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64171521 80 - 94057673 CCCACGGACAGCAGGTTGCGGTAGTTTTCCAGTATCACATCCCTGTACAGGTGCTTCTCTGCAGGATCCAGCAACTGCCA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218607 80 + 42029645 CCCAGAGACACCAGGTGGCTATAATTCTCCAGGATCACATCCCTGTACAGGTACTTCTGTGCAGAATCCAGCAACTGCCA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 11989 80 - 12560 CCTGTACACACCAGGTTGCGATAGTTTTCCAGTATCACATCCCTGTACAGGTACTTCTGCGCAGAATCCAGTAACTGCCA i myoLuc1.scaffold_130229 C 0 C 0 s loxAfr3.scaffold_113 125252 80 - 3408981 CCCACTGATACTAGGTTGTTATAGTTTTCCAATATCACATCCTGGTACAGGTACTTCTGAGCAGAATCCAGTAGCTGCCA i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 86305 80 + 154172 CCCACTGATATTAAGTTGTTATAGTTTTCCAATATCACGTCCCTATACAGGCACTTCTGAACGGAATCCAGTAGCTGCCA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_177942 3652 80 - 3798 CCCACTGATACTAAGTTGTTATAATTTTCCAATATCACATCCCTATATGGGTACTTCCGTGCAGAATCCAGTAGCTGCCA i choHof1.scaffold_177942 C 0 n 80 s xenTro2.scaffold_34 2049652 80 + 4187163 CCCAGATAGCACAGGGTCTCGTAGTTGTCCAGCATCACATTGGCGTAAAGCAGTTTCTGCCACTCTGCCAGACACCCCCA i xenTro2.scaffold_34 N 0 C 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=658724.000000 s hg19.chrUn_gl000223 98988 122 + 180455 TTCATCCCAGGTGAACTCCATAGATATATCCTTGAATGACAATAATCCCTG----AAATAACACACACCCTGTTCAATTGGATGCAATTACATTAGGTGACATGGAAAAGATGCAGAGGA---ACTGGG s rheMac2.chr11 235327 122 - 134511895 TTCATCCCAGGTGAATTCCATAGATATATCCTTGAATGACAATAATCCCTG----AAATAACACACACCCTGTTCAATTGGATGCAATTACATTAGGTGATGTGGAAAAGATGCAGAGGA---ACTGGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263501 122 - 136387465 TTCATCCCAGGTGAACTCCATAGATATATCCTTGAACGACAATAATCCCTG----AAATAACACACACCCTGTTCAATTGGATGCAATTACATTAGGTGACATGGAAAAGATGCAGAGGA---ACTGGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224206 122 - 135371336 TTCATCCCAGGTGAACTCCATAGATATATCCTTGAATGACAATAATCCCTG----AAATAACACACACCCTGTTCAATTGGATGCAATTACATTAGGTGACATGGAAAAGATGCAGAGGA---ACTGGG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 50985 122 - 57811 TTCTTCCCAGGTGAACTCCATAGATATATCCTTGAATGACAATAACCCCTG----TAATAATACACACCCCATTCAATCAGATGCAATTACATTACATGAAATGGAGAAGATGCAGATGA---ACTGGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 281833 106 + 667635 CTCTTCCCAGGAGAACTCCAGGGACACGTCCTTGAATGACAATAATCCCTG----CAAAAACATATACCCCATTCAGCTGGATGCAATTACATGAAGTGACATGGGAAAG------------------- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703250 125 + 1032594 TTCTTCCCAGGTAAACTCCATAGATATATCCTTGAATGACAATAATCCCTG----TAATCAGACATAGCCAATCCAATCAGATGCAATTTTATCAAGTGATGTGGAAAAGATGCAGAGGAATCACTGAG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 29996280 122 - 76506943 CTCTTCCCAGCTGAACTCCATAGATATATCCGTGAATGACAACAACTCCTG----TAACAACACACACATTACTCAATAGGCTGCAATTACAGTTGGAGACATGGAGAAGCTGTAGAGGA---CCCAGG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64171601 121 - 94057673 TTCTTCCCAGGTGAACTCCATAGATATATCCTTGAACGACAGTAATCCCTG----TAATAATACACACCCCATTCAGTC-GATGCAAGTACATTAGGCGACGTGGAAAAGATGCAGAGTC---ACTGAG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218687 122 + 42029645 CTCTTCCCAGGTGAACTCCATAGATATATCCTTGAATGACAATAATCCCTG----TAATAATATACATCCCATTCAATCGGATGCTATTACATTAGGTGACGTGGAACAGATGTACAGGA---ACTGGT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_130229 12069 103 - 12560 TTCTTCCCAGGTGAAGTCCATAGCTATATCCTTGAATGACAACGATTCCTG----TAATAACACATACCCCATTCAATCAGATGCAGTCACCCTAGGTGACATAGGA---------------------- i myoLuc1.scaffold_130229 C 0 N 0 s loxAfr3.scaffold_113 125332 121 - 3408981 TTCTTCCCAGGTGAACTCCATAGATACATCCGTGAATGACAATAATCCCTG----TAATAATATATACTC-ATTCAATCCGATGCAACTGCACTAGGTGACGTGGACAAGGTGCAGAGGA---ACTGGG i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 86385 120 + 154172 TTCTTCCCAGGTGAATTCCATGGATACATCCTTGAATGATAATAACCCCTG----TAATAATACATCCCC-ATTCAATGTAACGTGATTGCATTAGGCAACATGGAAAAGAT-CAGAGGA---ACTTGA i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2858 120 + 11585 TTCTTCCCAGGTGAATTCCACAGATACATCCCTGAATGACAATAATCCCTG----TAACAATACGTACCC-ATTCAATCAGAAGCGACTGCATTAGGCAACATGGAAAAGAT-TAGAGGA---AATGGG i choHof1.scaffold_66145 I 80 C 0 s xenTro2.scaffold_34 2049732 110 + 4187163 CTCCTCCTCGGAGAAATACACTGCTATTTCTTCAAACTTAACTGGTGCCTGAAACTAATATTACATA----------------GCATTAGTGGTGTATTCCATGGGACAGGGGCAGAAAG---AATGAG i xenTro2.scaffold_34 C 0 N 0 e vicPac1.scaffold_254083 350 13 + 905 I e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=158486.000000 s hg19.chrUn_gl000223 99110 77 + 180455 AAGGGAT-AAATGTTCCTCTACCAACTATTTCCTGTGGCTGGTTCAGCATTTACTTT-GTGAGAGAA---TTAAAAATCAAT-- s rheMac2.chr11 235449 77 - 134511895 AAGGGAA-AAATGTTCCTCTACCGACTATTTCCTGTGTCCGGTTTAGCATTTATTCT-GTGAGAGAA---TTAAAAATCAAT-- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263623 77 - 136387465 AAGGGAT-AAATGTTCCTCTACCAACTATTTCCTGTGGCTGATTCAGCATTTACTTT-GTGAGAGAA---TTAAAAATCAAT-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224328 77 - 135371336 AAGGGAT-AAATGTTCCTCTACCAACTATTTCCTGTGGCTGGTTCAGCATTTACTTT-GTGAGAGAA---TTAAAAATCAAT-- i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 51107 71 - 57811 AAGTAA--AAATGTTCCTCCACAGACTGTTTCCTGGGCCTAGTTCAGCATTTACTTT-GTGAAATAA---TTAAAAA------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 281939 61 + 667635 -----AG-AAACATCCCTCCAT--AGCATCTCCTGGGC-----TCAGCATTTACTTT-GTAGGAGAA---TAcaa--tca---- i cavPor3.scaffold_248 C 0 I 15 s oryCun2.chrUn0106 703375 59 + 1032594 AAAGTAG-ACACTTTGCTTCAC--ACCATCTCCTGTGCCTGCTTCAGTATGTATTCT-GTGAG--------------------- i oryCun2.chrUn0106 C 0 I 15 s vicPac1.scaffold_273630 578 72 - 820 AAAGGAG-AAGCGCCCCTCCACGGACTGCCTCCCACACCCAGGCCAGGGCTTACTTT-GTGCGAGAA---TTTAAAA------- i vicPac1.scaffold_273630 n 13 n 13 s bosTau4.chr17 29996402 71 - 76506943 AAAGGAG-AA--TATCCTCCACAGTCTGCCTCCTGTGCCCAGGCCACCACTTCTTTT-GAGAGGGAA---TTAAAAAT------ i bosTau4.chr17 C 0 I 198 s equCab2.chr8 64171722 72 - 94057673 AGAGGAG-AAGCCTTCCTCCACAGACTGTCTCCTGT------GCCAGCATCTACTTTGATGAGAGAA---CTAAAAATAAAT-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3218809 56 + 42029645 AAAGGAA-AAATGTTCCTCCATGGACTGCCTCCTGTGTCCAGGTCAGCACGGACTTT--------------------------- i canFam2.chr26 C 0 I 238 s loxAfr3.scaffold_113 125453 75 - 3408981 AAATGAGAAAAAGTTCCTCCACAGGTGGCCTCCTATGCCCAGTT------TTACTTT-GTGAAAGAATTTTTAAAAAAGGTT-- i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_7587 86505 78 + 154172 AAATGAGAAAAAGCTCCTCCACAGATTGGCACCTAAGCTCAGTTCAGCAATTACTTT-TTCAGAGGA-----GAAAAAAAAAAT i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 2978 69 + 11585 AAATGAG-AAAAGCGCCTCCACAGACTGCCTCCCATGCTTAGCTGAGCATTTACTTT-TTGAAAGGG-----AAaa-------- i choHof1.scaffold_66145 C 0 C 0 e micMur1.scaffold_13183 43277 463 + 44925 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I a score=-1773.000000 s hg19.chrUn_gl000223 99187 16 + 180455 -----CAAGGAGTgccaggca s tarSyr1.scaffold_130847 4320 15 - 4866 -----AACTGTg-gctgggtg i tarSyr1.scaffold_130847 N 0 C 0 s panTro2.chr12 224405 16 - 135371336 -----CAAGGAGTgccaggca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263700 16 - 136387465 -----CAAGGAGTgccaggca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235526 16 - 134511895 -----CAAGGAGTTctgggca i rheMac2.chr11 C 0 C 0 s loxAfr3.scaffold_113 125528 20 - 3408981 -GAGATTctatgtgccagata i loxAfr3.scaffold_113 C 0 I 527 s dasNov2.scaffold_7587 86583 1 + 154172 C-------------------- i dasNov2.scaffold_7587 C 0 I 2377 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e tupBel1.scaffold_103331.1-57811 51178 0 - 57811 C e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3047 0 + 11585 C e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64171794 0 - 94057673 C e canFam2.chr26 3218865 238 + 42029645 I a score=24648.000000 s hg19.chrUn_gl000223 99203 51 + 180455 cggtggctcacg---------ccagcactttcggaggccaaggcgggtggatcacaag-gg s tupBel1.scaffold_103331.1-57811 51178 26 - 57811 ---------------------TCGGTTAATCAGGGGGC---AGCAGGTGG----------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s rheMac2.chr11 235542 60 - 134511895 tggtggctcacgcctgtaatcccagcacattcagagaccaaggcaggaggatcacgag-gt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263716 60 - 136387465 tggtggctcacgcctgtaatcccagcactttcggaggccaaggcgggtggatcacaag-gt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224421 51 - 135371336 cggtggctcacg---------ccagcactttcggaggccaaggcgggtggatcacaag-gg i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_130847 4335 61 - 4866 tggtacctcatgccccaaatcccagcactttgggaggctaagacaaaaggattgccggagt i tarSyr1.scaffold_130847 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_27471.1-844 844 0 - 844 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3047 0 + 11585 C e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64171794 0 - 94057673 C e canFam2.chr26 3218865 238 + 42029645 I a score=22830.000000 s hg19.chrUn_gl000223 99254 41 + 180455 caggagttcaagaccagcctgaccaagatggtgaaaccctg s rheMac2.chr11 235602 41 - 134511895 caggagtttaagaccagcctgaccaagatggtgaaaccctg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263776 41 - 136387465 caggagttcaagaccagcctgaccaagatggtgaaaccctg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224472 41 - 135371336 caggagttcaagaccagcctgaccaagatggtgaaaccctg i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_130847 4396 41 - 4866 ccagtggccaagacccgcatgggtactttggcaagatcttg i tarSyr1.scaffold_130847 C 0 C 0 s otoGar1.scaffold_8845.1-96352 45980 21 + 96352 cacaggtttgagactaacctg-------------------- i otoGar1.scaffold_8845.1-96352 n 0 I 18 s tupBel1.scaffold_103331.1-57811 51204 27 - 57811 --------------CACTGTGATTAAGATGGCTAGATCCTA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s choHof1.scaffold_66145 3047 18 + 11585 -----------------------caaaattctgagctgctg i choHof1.scaffold_66145 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64171794 0 - 94057673 C e canFam2.chr26 3218865 238 + 42029645 I a score=1453.000000 s hg19.chrUn_gl000223 99295 21 + 180455 tctctactaaaaatacaaaaa s tupBel1.scaffold_103331.1-57811 51231 14 - 57811 -------CATGGTGACAGGAT i tupBel1.scaffold_103331.1-57811 C 0 I 4 s otoGar1.scaffold_8845.1-96352 46019 9 + 96352 --tct----------caaaaa i otoGar1.scaffold_8845.1-96352 I 18 I 63 s tarSyr1.scaffold_130847 4437 19 - 4866 tctct--tcaataaaaaaaaa i tarSyr1.scaffold_130847 C 0 C 0 s panTro2.chr12 224513 21 - 135371336 tctctactaaaaatacaaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263817 21 - 136387465 tctctactaaaaatacaaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235643 21 - 134511895 tctctattaaaaatacaaaaa i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64171794 11 - 94057673 ----------ACATACATAAA i equCab2.chr8 C 0 C 0 s choHof1.scaffold_66145 3065 1 + 11585 ----t---------------- i choHof1.scaffold_66145 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3218865 238 + 42029645 I a score=13737.000000 s hg19.chrUn_gl000223 99316 25 + 180455 ttagctgggcgcagtggc---aggc-act s tarSyr1.scaffold_130847 4456 25 - 4866 ttacctgggtatggtggt---gcat-tcc i tarSyr1.scaffold_130847 C 0 C 0 s panTro2.chr12 224534 25 - 135371336 ttagctgggcgcagtggc---aggc-act i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263838 25 - 136387465 ttagccgggcgcagtggc---aggc-acc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235664 26 - 134511895 ttagccaggcgcagtggc---aggctacc i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_103331.1-57811 51249 26 - 57811 --GTCTGGACTCAGTGGCTTGAGAA-GCA i tupBel1.scaffold_103331.1-57811 I 4 C 0 s choHof1.scaffold_66145 3066 12 + 11585 -------------gtggc---agat-att i choHof1.scaffold_66145 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_8845.1-96352 46028 63 + 96352 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64171805 0 - 94057673 C e canFam2.chr26 3218865 238 + 42029645 I a score=16305.000000 s hg19.chrUn_gl000223 99341 36 + 180455 tgtaatcctagctactcaggtggctgaggcaggaga s tarSyr1.scaffold_130847 4481 32 - 4866 tgta----cagcttcttggatggctgaggtggaagg i tarSyr1.scaffold_130847 C 0 C 0 s panTro2.chr12 224559 36 - 135371336 tgtaatcctagctactcaggtggctgaggcaggaga i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263863 36 - 136387465 tgtaatcctagctactcaggtggctgaggcaggaga i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235690 36 - 134511895 tgtaatcccagctactcaggtggctgaggcaggaga i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_103331.1-57811 51275 34 - 57811 GACGGTCATGTGTGCCCAGAATCTTGAG--AGGAGA i tupBel1.scaffold_103331.1-57811 C 0 C 0 s equCab2.chr8 64171805 1 - 94057673 ------------------------T----------- i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_8845.1-96352 46028 63 + 96352 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3078 0 + 11585 C e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3218865 238 + 42029645 I a score=19809.000000 s hg19.chrUn_gl000223 99377 29 + 180455 atcacttgaacccaggcagcagaggttgc s rheMac2.chr11 235726 29 - 134511895 atcacttgaacctgggcggcagaggttgc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263899 29 - 136387465 atcacttgaacccaggcggcagaggttgc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224595 29 - 135371336 atcacttgaacccaggcagcagaggttgc i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_130847 4513 29 - 4866 atcacctgagcccaacaggtcaaggatgc i tarSyr1.scaffold_130847 C 0 C 0 s otoGar1.scaffold_8845.1-96352 46091 29 + 96352 atctctagaacccaagagtttgaggttct i otoGar1.scaffold_8845.1-96352 I 63 I 29 s tupBel1.scaffold_103331.1-57811 51309 16 - 57811 -------------ATGAAAAGGGGATTGC i tupBel1.scaffold_103331.1-57811 C 0 C 0 s equCab2.chr8 64171806 9 - 94057673 --------------------AAATGTTTT i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3078 0 + 11585 C e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3218865 238 + 42029645 I a score=7893.000000 s hg19.chrUn_gl000223 99406 31 + 180455 agcaagccaaaatcgtgcc---actgcactccag s tarSyr1.scaffold_130847 4542 30 - 4866 a-ctggtcatgagcatgcc---actacactccag i tarSyr1.scaffold_130847 C 0 C 0 s panTro2.chr12 224624 31 - 135371336 agcaagccaagatcgtgcc---actgcactccag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 263928 31 - 136387465 agtgagccgagatcgcgcc---actgcactccag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235755 31 - 134511895 agcgagccgacatcgcgcc---actgcactccag i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_103331.1-57811 51325 34 - 57811 AGCATGTTCTCCCCCTGCTGGGGATGCTTTCTTA i tupBel1.scaffold_103331.1-57811 C 0 I 13 s equCab2.chr8 64171815 13 - 94057673 AAAAGATTAAAAT--------------------- i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_8845.1-96352 46120 29 + 96352 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3078 0 + 11585 C e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3218865 238 + 42029645 I a score=-708.000000 s hg19.chrUn_gl000223 99437 54 + 180455 cct---cggcgacagagtgagactccatctaaaaaaaaaaaaaagaaagaaagaaaa s rheMac2.chr11 235786 50 - 134511895 cct---ggtcgacagagtgagactccatctcaaaagaaaaaaaa----gaaaaaaaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 263959 54 - 136387465 cct---gggcgacagagtgagactccatctcaaaaaaaaaaaaaaaagaaaaaaaaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224655 53 - 135371336 cct---gggcgacagagtgagactccatct-aaaaaaaaaaaaagaaagaaagaaaa i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_130847 4572 20 - 4866 gctg--gggcaacagaatgaga----------------------------------- i tarSyr1.scaffold_130847 C 0 N 0 s otoGar1.scaffold_8845.1-96352 46149 48 + 96352 ---ggagggcaacaaagtgaaactctgtctccaaaataaataaataaaTAA------ i otoGar1.scaffold_8845.1-96352 I 29 n 29 s tupBel1.scaffold_103331.1-57811 51372 46 - 57811 TCT---GGTGAGCACATGTGCCCTGCAGCAAATAGGAAAAAAAGCAGT--------c i tupBel1.scaffold_103331.1-57811 I 13 C 0 s equCab2.chr8 64171828 2 - 94057673 -----------------------------------------Aa-------------- i equCab2.chr8 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3078 0 + 11585 C e cavPor3.scaffold_248 282000 15 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3218865 238 + 42029645 I a score=35113.000000 s hg19.chrUn_gl000223 99491 32 + 180455 aaTCAATCAAGGAGCTTCTATTTG---CCGGTACT s canFam2.chr26 3219103 20 + 42029645 -------------gtttccatgtgc--cagatact i canFam2.chr26 I 238 C 0 s equCab2.chr8 64171830 29 - 94057673 ----aataattgtgcttctctgtga--cggatatt i equCab2.chr8 C 0 C 0 s cavPor3.scaffold_248 282015 33 + 667635 aatcaatcaTTGAGCCTCTATATGG--CAGATACT i cavPor3.scaffold_248 I 15 C 0 s tupBel1.scaffold_103331.1-57811 51418 35 - 57811 aatcaatcattgagcttctctatgtaccccatatt i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 224708 32 - 135371336 aaTCAATCAAGGAGCTTCTATTTG---CCGGTACT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 264013 32 - 136387465 aaTCAATCAAGGAGCTTCTATTTG---CCGATACT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 235836 32 - 134511895 aaTCAATCAAGGAGcttctatttg---ccagtact i rheMac2.chr11 C 0 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e loxAfr3.scaffold_113 125548 527 - 3408981 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e choHof1.scaffold_66145 3078 0 + 11585 C e bosTau4.chr17 29996473 198 - 76506943 I a score=114097.000000 s hg19.chrUn_gl000223 99523 53 + 180455 CTCT------TGggtcctgaagatttcag-gatgaataaaatccagttctgtcttcaaga s rheMac2.chr11 235868 53 - 134511895 ctct------tgggtcctgaagatttcag-gatgaataaaatccagttctgtcttcaaga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264045 53 - 136387465 CTCT------TGggtcctgaagatttcag-gatgaataaaatccagttctgtcttcaaga i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224740 53 - 135371336 CTCT------TGGGTCCTGAAGATTTCAG-GATGAATAAAATCCAGTTCTGTCTTCAAGA i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 51453 53 - 57811 cttt------tgggtcctgaagatttggg-gatgaataccatccaggtctatcttcaaga i tupBel1.scaffold_103331.1-57811 C 0 C 0 s cavPor3.scaffold_248 282048 59 + 667635 CTTTGTATCCTGGGTCCTAAAGATTTCAA-GATGTGTAAAATCCAATTTTGTTATTAACA i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64171859 53 - 94057673 attt------tgggtcctgaagatttcaa-gatgaataaaactcacttctgcccttgaga i equCab2.chr8 C 0 C 0 s canFam2.chr26 3219123 53 + 42029645 ggtt------ttggtcctgaaaacttcag-gatgaacacaaccaacttctgccctcaaga i canFam2.chr26 C 0 I 234 s choHof1.scaffold_66145 3078 54 + 11585 cttt------tgggtcccaacgatatcaaatacaaataaaatccatttctaccctcaaaa i choHof1.scaffold_66145 C 0 C 0 s loxAfr3.scaffold_113 126075 30 - 3408981 ------------------------------aatgaataaaacacaattctactcacaaga i loxAfr3.scaffold_113 I 527 C 0 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_13183 43277 463 + 44925 I e oryCun2.chrUn0106 703434 15 + 1032594 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I a score=168879.000000 s hg19.chrUn_gl000223 99576 80 + 180455 aactttctatcttgtagatgggaatgaaca-----tttatacatgcaaacaaaataagGTGTTCTGAGTCCT---TGGTAAAAAC--ATC s rheMac2.chr11 235921 80 - 134511895 agctttctatcttgtagataggaatgaaca-----tttatacatgcaaacaaaataaggtgtTCTGAGTCCT---TGGTAAAAAC--ATC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264098 80 - 136387465 agctttctatcttgtagatgggaattaaca-----tttatacatgcaaacaaaataagGTGTTCTGAGTCCT---TGGTAAAAAC--ATC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224793 80 - 135371336 AACTTTCTATCTTGTAGATGGGAATGAACA-----TTTATACATGCAAACAAAATAAGGTGTTCTGAGTCCT---TGGTAAAAAC--ATC i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 51506 80 - 57811 catttttaatattgtagaggaaaacaaatt-----tttatacatgcaaatgaaataATGTGTTTCAAGTCTT---TGATAAAAAA--ACA i tupBel1.scaffold_103331.1-57811 C 0 I 1616 s cavPor3.scaffold_248 282107 58 + 667635 CAC----AATTTTGTAAAAAGAAACAAGCA-----CATATACAT-----TGAAGT------------GTATA---TAAAACAGAC--CT- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703449 83 + 1032594 TACTCTGAATCTTTTATAGGGAAGCAAACAGCTATCACATACAC--AAATGAAATAAGCTGTTCTGAGCCTC---TGATACATAT--TTA i oryCun2.chrUn0106 I 15 C 0 s equCab2.chr8 64171912 80 - 94057673 acctttcagtcttgtagtgggaaacaaaca-----ttaatatatgcaaatgaaataagGTGTTTTGACTC-----TGATAAAAACATATC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3219410 84 + 42029645 AGCTTCCAGTCTTGTAGAGGGAAACAGGCA-----TCTATACATGAAGATGAAAC-AGGTGTTGTAAGTCTTGCATTAAAAAAAATTATC i canFam2.chr26 I 234 C 0 s micMur1.scaffold_9962 35006 56 - 51117 --------------------------AACA-----TTTAGATATGCAAATGAAATAAGGTCTTCTGAGTTTT---TTATAAAAACATATC i micMur1.scaffold_9962 I 23385 C 0 s choHof1.scaffold_66145 3132 76 + 11585 agctttcagtcttaaagaggtaaacaagta-----ctgatgcatgcaaatgaaa----gtgttatgaatctt---tgataaaaac--ata i choHof1.scaffold_66145 C 0 I 2 s loxAfr3.scaffold_113 126105 80 - 3408981 agccttcagtcttggagagggaaacaaaca-----cctaTTTGTGCAAATGAAATAAGATGTTATGAGTCTT---TGATAAAAAC--ATA i loxAfr3.scaffold_113 C 0 I 2 e dasNov2.scaffold_7587 86584 2377 + 154172 I e vicPac1.scaffold_273630 650 13 - 820 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I a score=94505.000000 s hg19.chrUn_gl000223 99656 26 + 180455 CAGGGTACATTTTGTACAGAAATGAA s rheMac2.chr11 236001 26 - 134511895 CAGGGTACATTTTGCACAGGAATGAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264178 26 - 136387465 CAGGGTACATTTTGTACAAAAATGAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224873 26 - 135371336 CAGGGTACGTTTTGTACAGAAATGAA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 282165 23 + 667635 --GGGT-TACATTCCACAGAATTGGA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703532 26 + 1032594 CAGGGTATATTTTGCACAGAAATGGA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64171992 26 - 94057673 CAGGGTATATTCTGCAGAGAGATGGA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3219494 26 + 42029645 CAGGATATATTTTGCCCAGAGATGAA i canFam2.chr26 C 0 C 0 s micMur1.scaffold_9962 35062 26 - 51117 AAGGCTATATTTTACACAGAAACAAA i micMur1.scaffold_9962 C 0 C 0 s loxAfr3.scaffold_113 126187 26 - 3408981 CTGGGTATAATTGTGACAGAAATGGA i loxAfr3.scaffold_113 I 2 I 32 s dasNov2.scaffold_23486 46608 26 + 54585 CAGGGTATATTTTGCACAGAAATGGG i dasNov2.scaffold_23486 n 2377 I 694 s choHof1.scaffold_66145 3210 26 + 11585 caaggtatattttgcatagaaatgag i choHof1.scaffold_66145 I 2 I 44 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 51586 1616 - 57811 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I a score=-33668.000000 s hg19.chrUn_gl000223 99682 33 + 180455 GAGAG----------------------------------------CCACTCAAG----------TAGTCTT--AGAAGATTCATG s micMur1.scaffold_9962 35088 75 - 51117 GAGAATAATTCTAAATAAGGGTGCCAAATTTGGCTCTATAGAGATTCACTTGAG----------CAGTGTTACAGAAGATTCATG i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 236027 33 - 134511895 GAGAG----------------------------------------CCACTCAAG----------TAGTCTT--AGAAGATTCATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264204 33 - 136387465 GAGAG----------------------------------------CCACTCAAG----------TAGTCTT--AGAAGATTCATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224899 33 - 135371336 GAGAG----------------------------------------CCACTCAAG----------TAGTCTT--AGAAGATTCATG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 282188 65 + 667635 AGAAAAATTCTTAGGAAGG---TCTAGACTTGGCT----------CTACTGAAATACTGGGG--CAGTTGG-----AGGTTGATA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703558 70 + 1032594 GACAATAGTCCTAAAAAGGGATTCCAGATTTGGTC----------CCATTAAGAGCCAAGTGAACAGTCTC-----AGATTCATG i oryCun2.chrUn0106 C 0 I 2 s equCab2.chr8 64172018 34 - 94057673 GAGAACAGTTCTAAATAAAGGTGCCAGACTCATG--------------------------------------------------- i equCab2.chr8 C 0 I 590 s canFam2.chr26 3219520 4 + 42029645 AAGA--------------------------------------------------------------------------------- i canFam2.chr26 C 0 I 2008 s loxAfr3.scaffold_113 126245 25 - 3408981 GAGAG----------------------------------------TCACTTGAA----------C----------ATGATTCACG i loxAfr3.scaffold_113 I 32 C 0 s dasNov2.scaffold_23486 47328 33 + 54585 GAGAG----------------------------------------TCACATGAG----------CAGTTTT--GGAAGATTCATG i dasNov2.scaffold_23486 I 694 C 0 s choHof1.scaffold_66145 3280 33 + 11585 gagag----------------------------------------tcacatgag----------cagtctt--ggataattcata i choHof1.scaffold_66145 I 44 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 51586 1616 - 57811 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I a score=79694.000000 s hg19.chrUn_gl000223 99715 60 + 180455 ATGTGT---TCAAGAAGTTGGGGTAGAAAGGGCAATTCAGGAGGT-GTTTGGAC-GAGGTTCAGC s micMur1.scaffold_9962 35163 60 - 51117 ATGTGT---TCCCCAAGATGAGGT-GAAAGGGCAATTCAGAAGGT-GTttagaaggaggttaaac i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 236060 63 - 134511895 ATGTGTTCCTCAAGAAGTTGGGGTGGAAAGGGCAATTCAGGAGGT-GTGTGGAC-GAGGTTCAAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264237 60 - 136387465 ATGTGT---TCAAGAAGTTGGGGTGGAAAGAGCAATTCAGGAGGT-GTTTGGAC-AAGGTTCAAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224932 60 - 135371336 ATGTGT---TCAAGAAGTTGGGGTAGAAAGGGCAATTCAGGAGGT-GTTTGGAC-GAGGTTCAGC i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 282253 63 + 667635 ATGATT-CTCCAAGATGATGAGGTGGAAAGGGAAAATCAGGGTGTTGTTATCAT-GGAGTTCACC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703630 60 + 1032594 ATGTTT-CCCCAAGAAGATGGAGTGGGAAGGACGA--CAGGAGGTCATTAGAAT-GAGGTTC-CC i oryCun2.chrUn0106 I 2 C 0 s loxAfr3.scaffold_113 126270 59 - 3408981 GTGTGTTCCCCAAGAAAATGGGGTGGAAAGGGCAATTCAGGAGAC-----AATT-TAAGTCCAAC i loxAfr3.scaffold_113 C 0 I 2 s dasNov2.scaffold_23486 47361 56 + 54585 GTTTATTCTTTGA------AGGATA-AAAGGGCAATTCAGGAGAT-TGTAGAAC-TGGGTTCAAC i dasNov2.scaffold_23486 C 0 n 0 s choHof1.scaffold_66145 3313 55 + 11585 gtgcattctctga------tggatagaaagggcaaTTTGGGAGAC---Aagaat-taggttcaac i choHof1.scaffold_66145 C 0 I 2 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 51586 1616 - 57811 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=112313.000000 s hg19.chrUn_gl000223 99775 164 + 180455 TGAGAACAGGGGGA------------------------TAAACAAGAGAGTTTATC---CTTCTACTTGCAGGAGTCTGAAGGC-------AATTGGTCTGGGG-------------------------------------cttccatctc-ttgctccaccttacatggcttccacttccagggcaaccca-gtctaagatggctctagtcatcacatctgcattctaagcaacag s micMur1.scaffold_9962 35223 200 - 51117 tgtgaacaacaggacagaaa-----aatagcaatgggttaaacaagagagtttatccttcttctactagtaggagtctaaaggctccatcaccttggtttggggct----------------------------ccatcaccttcaatctt-ttgcttcacc-tgtgtggcttccattccctggGTAGTCCAGGGCTAAGATGACTCTGGT-ATCACATCTTCA-TCTAAATAGCAG i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 236123 163 - 134511895 TGAGAACAGGGGGA------------------------TAAACAAGAGAGTTTATC---CTTCTACTTGCAGGAGTCTGAAGGC-------AATTGGTCTGGGG-------------------------------------cttccatctc--tgctccaccttacacggcttccacttccagggcaaccca-gtctaagatggctctagtcatcacatctgcattctaagcaacag i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264297 164 - 136387465 TGAGAACAGGGGGA------------------------TAAACAAGAGAGTTTATC---CTTCTACTTGCAGGAGTCTGAAGGC-------AATTGGTCTGGGG-------------------------------------cttccatctc-ttgctccaccttacatggcttccacttccagggcaaccca-gtctaagatggctctagtcatcacatctgcattctaagcaacag i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 224992 164 - 135371336 TGAGAACAGGGGGA------------------------TAAACAAGACAGTTTATC---CTTCTACTTGCAGGAGTCTGAAGGC-------AATTGGTCTGGGG-------------------------------------cttccatctc-ttgctccaccttacatggcttccacttccagggcaaccca-gtctaagatggctctagtcatcacatctgcattctaagcaacag i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 282316 150 + 667635 TGTGAGTAACGGGA---GCA-----AACAACAGTGTA-TAAACAGAGGAGTTCATC---CTCCTACTTGCTAGAGTC-----CA-------AAAGAACCTGGGCTA----------------------------------------------------------GCAGGGC-TCCACTTGCAGGGTAACCCAAGTCTAAGATAAGCCTGGT-ACTACATTCAAA-TCTAAACAGC-- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 703690 204 + 1032594 CGGGAGCAACAGAA---ATAGCGGCGGCAGCAGCAGA-T-TTCACAGGTCATCCTG---CTTCTACTTGCAGGAGGCTGAGGCG-------AATGGGCCTGGGGCA----GGGACAAATGCACAGTCAGAGACTCAGTCACCTTCCATCTTTTTGCTCTGCCATGCATGGC-TCCA-TTGCTGGGGAACTCAGGTCTAAGAT---TCAGTC-ACCACATTTGGA-TTTGA------- i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 126331 129 - 3408981 --TGAGCAACAGAA------AAATAAATAGCAGTGAGTGAAACAAG-----TCTTT---CTCCCACTTCTAGGAGTCTGAAGGC-------AGTC---------------TGGTGAT-----------------------------------------------------------CTCCCAG-T--------ATCTAA-A-GGCTCCAGTCATTACATCTGCATCCTAACCAACGG i loxAfr3.scaffold_113 I 2 C 0 s choHof1.scaffold_66145 3370 207 + 11585 --tgagtaacagaa-----ggaaaaaattttagtagattaagcaaga----tcttt---ctcccacttgcaggaatatgaaggc-------aattgctctgggacaaatgtggcattgcatggcttcagggactctacgtgttcgaatttttttgttctactttacttgccttccactcccagag--------gtctaaga-ggacttaattataacacccgcattttaagcagcag i choHof1.scaffold_66145 I 2 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 51586 1616 - 57811 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=44770.000000 s hg19.chrUn_gl000223 99939 37 + 180455 caaagagTGGGGGCTGGGAGGG---AACA-GCAGGGAAATT s choHof1.scaffold_66145 3577 39 + 11585 ctaaga-aggggactgggagggaggaatg-gcagggagatt i choHof1.scaffold_66145 C 0 C 0 s loxAfr3.scaffold_113 126460 39 - 3408981 CAAAGA-AGGGCACTCAGAGGGAGAAATA-ACagggagatt i loxAfr3.scaffold_113 C 0 C 0 s oryCun2.chrUn0106 703894 15 + 1032594 -------------------------AGCA-GCAGGGACACT i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 282466 35 + 667635 CACAGAATGG--GTTGGAAATG---AACA-GCAAGAGAATT i cavPor3.scaffold_248 C 0 I 168 s tupBel1.scaffold_112208.1-47537 12499 38 - 47537 CAAGGAGGGGGGGGAAAAAAGC---AAAACATACAGAAAAC i tupBel1.scaffold_112208.1-47537 n 1616 C 0 s micMur1.scaffold_9962 35423 35 - 51117 TAAACA-TGGCAACTAGGAGGG---AACA-GCA-ggaaatt i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 236286 37 - 134511895 caaagagTGGGGGCTGGGAGGG---AACA-GCAGGGAAATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264461 37 - 136387465 caaagagTGGGGGCTGGGAGGG---AACA-GCAGGGAAATT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 225156 37 - 135371336 caaagagTGGGGGCTGGGAGGG---AACA-GCAGGGAAATT i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e gasAcu1.chrVI 14631673 0 - 17083675 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=27111.000000 s hg19.chrUn_gl000223 99976 37 + 180455 CAGAAATGGA-----------------------GTTTCTGT-----------ATATGCCCAAC------TGAAAAAC s choHof1.scaffold_66145 3616 48 + 11585 tggaaatgca-----------------------gtctccattttatacattcatgtgctcaca------taaaaaac i choHof1.scaffold_66145 C 0 C 0 s loxAfr3.scaffold_113 126499 47 - 3408981 cggaaatgta-----------------------gtctttgttctacttgcccatgtggccacc------t-aaaaac i loxAfr3.scaffold_113 C 0 C 0 s oryCun2.chrUn0106 703909 41 + 1032594 GGGAAATGTA-------------------GTCTGCTTCTCC-----------ACATGTTCAGC------TGAAAGAC i oryCun2.chrUn0106 C 0 C 0 s tupBel1.scaffold_112208.1-47537 12537 60 - 47537 AAGAAATGGAAGATCACTTGCTAATAATAACATGTTTGTTG-----------ATATGCTTGAT------TGAGACAA i tupBel1.scaffold_112208.1-47537 C 0 C 0 s micMur1.scaffold_9962 35458 47 - 51117 cagaaatgca-------------------gcctgttcctgt-----------atgtgctcaactccagttgaaaaat i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 236323 41 - 134511895 CAGAAATGGA-------------------GTCTGTTTCTGT-----------ATATGCCCAAC------TGAAAAAC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 264498 37 - 136387465 CAGAAACGGA-----------------------GTTTCTGT-----------ATATGACCAAC------TGAAAAAC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 225193 37 - 135371336 CAGAAATGGA-----------------------GTTTCTGT-----------ATATGCCCAAC------TGAAAAAC i panTro2.chr12 C 0 C 0 s gasAcu1.chrXIII 3311157 19 - 20083130 CAGAGACAGA-----------------------GCCTCCAG-----------C------------------------ i gasAcu1.chrXIII n 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=62629.000000 s hg19.chrUn_gl000223 100013 73 + 180455 TGGCAAATC---TATTATGAA-AGAAAGAAAAAAAAATAGA-TGGAACATAATTTG--CAGTCCCTGTACCAGAAG-CAAG s panTro2.chr12 225230 73 - 135371336 TGGCAAATC---TATTATGAA-AGAAAGAAAAAAAAATAGA-TGGAACATAATTTG--CAGTCCCTGTACCAGAAG-CAAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 264535 72 - 136387465 TGGCAAATC---TATTATGAA-AGAAAGAAAAAAAAAGAT--TGGAACATAATTTG--CAGTCCCTGTACCAGGAG-CAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 236364 74 - 134511895 TGGCAAATC---TATTATGAA-AGAAAGAAAAAAAAATAGATTGGAACATAATTTG--CAGTCCCTGTACCAGGAG-CAAG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 35505 70 - 51117 tggtgaacc---tattatgga-acaaagaaaaatgtat----tgggagataatctg--cagtcactgcACCAGGAG-CAAG i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_112208.1-47537 12597 52 - 47537 TATACAGTG---TACTCTGGATAGAAAAAAAAAAAAAGAAA-TGGAAAATTGTTTG------------------------- i tupBel1.scaffold_112208.1-47537 C 0 n 0 s oryCun2.chrUn0106 703950 57 + 1032594 C-------------TTACGA--AGAAAGAAAAACTAC-----TGAGAGATAACTTG--CAGACCCTG-AGAAGTGG-CAAG i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 126546 74 - 3408981 tgctgaatctattattatgga-agaa--aaaataataatat-cgagagacaacatg--cagtccctgTACAAGAAG-CAAG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_66145 3664 76 + 11585 tggaaagtctattattatgga-agaaagaaaaaaataatat-tggcagacaacttg--cagtccctacACAAGGAG-CAAA i choHof1.scaffold_66145 C 0 C 0 s xenTro2.scaffold_677 73438 63 + 553670 TGGCAATGT---TATTGTTAG-AGAAGGAAAAAAAAACA---TAGAGCAAGACCAGTATAATTTCC-----------CAGA i xenTro2.scaffold_677 N 0 C 0 s gasAcu1.chrXIII 3311176 72 - 20083130 TAGCACGTG---TACTA-GCT-GGTTAGATGAGGAAATAGA-CTGTGAACGTTTTG--TGGTACCAGAACAAAACGACAA- i gasAcu1.chrXIII C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e danRer6.chr4 26584187 0 - 71658100 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=61533.000000 s hg19.chrUn_gl000223 100086 54 + 180455 CATCACA--CAGAACACATGGTAGAG-C-----CTGGTCAATTCAAGGAACAACAAATATTT s panTro2.chr12 225303 54 - 135371336 CATCACA--CAGAACACATGGTAGAT-C-----CTGGTCAATTCAAGGAACAACAAATATTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 264607 54 - 136387465 CATCACA--CAGAACACATGGTAGAG-C-----CTGGTCAATTCAAGGAACCGCAAATATTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 236438 54 - 134511895 CATCACA--CAGAACACACGGTAGAG-C-----CTGGTCAATTCAAGGAACTGCAAATATTT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 35575 54 - 51117 TATCACA--CAGAACAAATGGTAGAA-C-----CTGGTCAATTCAAGGAACTGCAAATATTT i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 704007 52 + 1032594 CACTGTA--C--AACACGTGGCAGGG-C-----CTGGTAAATTCAAGACACTGCAACTATTT i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 126620 55 - 3408981 CATTACA--CAGGACGTGTGGTAAAACC-----CTGGTAAATTCAAGGAACTAAAAATATTT i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_66145 3740 54 + 11585 TATGAAA--ATGAACATGTAGTAGAA-C-----CTGGTAAATTCAAGAAACTGCAAGTGTTT i choHof1.scaffold_66145 C 0 C 0 s xenTro2.scaffold_677 73501 25 + 553670 AATGTCA--GAGCACATTGGGCAGAG-C---------------------------------- i xenTro2.scaffold_677 C 0 N 0 s gasAcu1.chrXIII 3311248 54 - 20083130 --CAACA--AGGAGCCAC---AACAG-CAGATTCTGGCTCCTCCAGGTGACAAGACATTTTT i gasAcu1.chrXIII C 0 n 0 s danRer6.chr16 28533164 57 + 51890894 --CAAAAATAGTAGCCTATTGAACAT-CAATATATAGCAAAGTAATGAAGTCAGAAATTC-- i danRer6.chr16 n 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=4762.000000 s hg19.chrUn_gl000223 100140 35 + 180455 -------CAGACACCG-------------AAAAGACTGCtgtctttg----ttttctat s panTro2.chr12 225357 35 - 135371336 -------CAGACACCG-------------AAAAGACTGCtgtctttg----ttttctat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 264661 35 - 136387465 -------CAGACACAG-------------AAAAGACTGCtgtctttg----ttttctat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 236492 35 - 134511895 -------CAGACACAG-------------AAAAGATTGCtgtctttg----ttttctat i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 35629 39 - 51117 -------TAGACATAG-------------ACAAAATGGCtgttttagtccattttctgt i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 704059 22 + 1032594 -------CAGAAATAG-------------AGAAAGTAATTGT----------------- i oryCun2.chrUn0106 C 0 I 30 s loxAfr3.scaffold_113 126675 14 - 3408981 -------CAGAAACAG-------------AGGAG------------------------- i loxAfr3.scaffold_113 C 0 I 35 s choHof1.scaffold_66145 3794 15 + 11585 -------CAGAAATAA-------------AGAAGA------------------------ i choHof1.scaffold_66145 C 0 I 54 s danRer6.chr16 28533221 44 + 51890894 CAGTATCTGGACAACATTACACCTTAGTTAAAAGACAATTACAT--------------- i danRer6.chr16 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_8845.1-96352 46197 29 + 96352 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=28693.000000 s hg19.chrUn_gl000223 100175 25 + 180455 ttttataacagaataccagaaactg s panTro2.chr12 225392 25 - 135371336 ttttataacagaataccagaaactg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 264696 25 - 136387465 ttttataacagaataccagaaactg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 236527 25 - 134511895 ttttataacagaataccagaaactg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 35668 25 - 51117 tgctataacataatatcagagactg i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_76152.1-9002 347 25 + 9002 tcctacatcagaataggagagactt i otoGar1.scaffold_76152.1-9002 n 29 C 0 s danRer6.chr16 28533265 23 + 51890894 --TTTCAAAAAACAAACAGAAACTG i danRer6.chr16 C 0 n 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704081 30 + 1032594 I e loxAfr3.scaffold_113 126689 35 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=299257.000000 s hg19.chrUn_gl000223 100200 326 + 180455 ggtaatttataaagaaaaa--tgttcatttagctcaaggttctggaggccaggaagtccataagcatggtgctggcatctggtgagggccttcttgctatgtcataacttggtggaaggcaatacatgatgagagacagacagcatgccagctcaggtctctcttcctatccttttaaggctactaatcccatcataggggccctgccctgatgactttatcaaatcctaaatacctcccaaaggtcccacctccaaataccatcaacaaataaatttaggaatt-------------------------------------------------aaatttccaacacatgaaatttggaagatacactcaaaccaca s panTro2.chr12 225417 326 - 135371336 ggtaatttataaagaaaaa--tgttcatttagctcaaggttctggaggccaggaagtccatgagcatggtgctggcatctggtgagggccttcttgctatgtcataacttggtggaaggcactacatgatgagagacagacagcatgccagctcaggtctctcttcctatccttttaaggctactaatcccatcataggggccctgccctgatgactttatcaaatcctaaatacctcccaaaggtcccacctccaaataccatcaacaaataaatttaggaata-------------------------------------------------aaatttccaacacatgaaatttggaagatacactcaaaccaca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 264721 326 - 136387465 gataatttataaagaaaaa--tgttcatttagctcaaggttctggaggccaggaagtccatgagcatggtgctggcatctggtgagggccttcttgctatgtcataacttggtggaaggcattacatgatgagagacagagagcatgccagctcaggtctctcttcctatccttataaagctactaatcccatcataggggccctgccctgatgaccttatcaaatcctaaatacctcccaaaggccccacctccaaataccatcaacaaataaacttaggaatt-------------------------------------------------acatttccaacacatgaaatttggaagatacactcaaaccaca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 236552 317 - 134511895 ggtgatttataaagaaaaa--tgttcatttagctcaaggttctggaggccgggaagcccacaggcatggtgctggcatctggtgagggccttcttgctgtgtcgtaacttggtagaaggcattacatgatgagagacagggagcatgccagctcaggtctctcttcctatccttataaagctactaatcccatcatagggtccctgccctgatgaccttgtcaaatcctaaatacct---------tctacctccaaatatcatcaacgaataaatttaggaatt-------------------------------------------------aaatttccaacatatgaaatttgaaagacacattcaaaccata i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 35693 375 - 51117 tttaattcataacgaaaaaaaagtttctttagctcaagattctggaggctgtgaagtccacgagcatggcaccaacatctgatgagggccttcttgctgtctcataatatggcagaaag--tcacatggtgagagacagggaacaggatagctcaagtctctccttctctcctcataaagccactgatcccatcatggtggtcccaccctgatgaccttatctaatcctaataacccactaaaggctccacctccaaataccatcgacatatgaatttggggattaagtttccaacacatATAGTGAAGAAATAATTACTGGAAAAAAAAAAAAaagtttccaacacatgaaatttgggggacacattcaaacaata i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_76152.1-9002 372 297 + 9002 cataattcataaaggaaaa----tttatgtagctcaaggttctggaggctgagaattccatgggcatagcatcagcatatgatgagggccttccttctgttttat-acatgggaaagga--ttacttggccagagatagggagtgcatttgctcaggtctc----tttttccttttagagctgctggtcccatcatag-ggccctactctgatgacc---------cctg----------aaacgctctacctgcaagtattgtcaacatatgaatgtggggatt-------------------------------------------------aagtttctcacacatgaaatttgagggacacattgaaaccata i otoGar1.scaffold_76152.1-9002 C 0 I 39 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704081 30 + 1032594 I e loxAfr3.scaffold_113 126689 35 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=39643.000000 s hg19.chrUn_gl000223 100526 53 + 180455 gcGATGGCTACAACAGGTGAACAGGTAAGAGCTAGACTACAAAATAAACCT---gg s panTro2.chr12 225743 53 - 135371336 gcGATGGCTACAACAGGTGAACAGGTAAGAGCTAGACTACAAAATAAACCT---gg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 265047 56 - 136387465 gcGATGGCTACAACGGGTGAACTGGTAAGAGCTAGACTACAAAATAAACCTGGAgg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 236869 56 - 134511895 gTGATGGCTACAATGGGTGAACAGGTAAGAGCTAGACTACAAAATAAACCTGGAgg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 36068 53 - 51117 gcTATGGCTATGATAGGTGAATAGGTAAGAGCCAGACAGCAAAGCAAACCT---GG i micMur1.scaffold_9962 C 0 I 34 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704081 30 + 1032594 I e otoGar1.scaffold_76152.1-9002 669 39 + 9002 I e loxAfr3.scaffold_113 126689 35 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=141582.000000 s hg19.chrUn_gl000223 100579 293 + 180455 ccgggtgtggtggctcatgcctgtaatcccagcactctgggaggccgagggaagcggatcacaaggtcaggagttcaagaccagcctgaccaacacggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtgggggtgggcacctgcaatcctagctactcagaaggctgaggc-aggagaatcgctggaaccagagaggcagaagttgcagtgagccaagatcgcatcactgcactccagcctgagcgacagagcaagactccgtctcaaaaaaataaataaa s rheMac2.chr11 236925 289 - 134511895 ccgggtacagtggctcatgcctgtaagcccagcactttgggaggctgagggaagcagatcacaaggtcaggagttcaagaccagcctgatcaacatggtgaaaccccatctctattacaattacaaaaattagccagccgtggtggcgggcgcctgcaagcctagctactcaagaggctgaggc-aggagaatcgcttgaaccagggaggcagaggttacagtgaaccaagatcatgacactgcactccagcctaggcgacagagcgagactctgtctc----aaataaataaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 265103 292 - 136387465 ccaggtgcggtagctcatgcctgtaatcccagaactctgggaggctgagggaagtggatcacaaggtcaggagttcaagaccagcctgaccaaca--gcgaaaccccatctctactaaaaatacaaaaattagccaggcgggggggcaggcacctgcaatcctagctactcaggaggatgaggcaaggagaatcgctggaaccagagaggcagaagttgcagtgagccatgatcgcatcattgcactccagcctgagcgacagagcaagactccatctcaaaaaaataaataaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 225796 293 - 135371336 ccgggtgtggtggctcatgcctgtaatcccagcactctgggaggccgagggaagcggatcacaaggtcaggagttcaagaccagcctgaccaacacggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtgggggtgggcacctgcaatcctagctactcagaaggctgaggc-aggagaatcgctggaaccagagaggcagaagttgcagtgagccaagatcgcatcactgcactccagcctgagcgacagagcaagactccgtctcaaaaaaaaaaataaa i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 36121 34 - 51117 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704081 30 + 1032594 I e otoGar1.scaffold_76152.1-9002 669 39 + 9002 I e loxAfr3.scaffold_113 126689 35 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=35299.000000 s hg19.chrUn_gl000223 100872 37 + 180455 taaataaaCCTGGAATG-----ATTTTCCTGGTTTATAGAAG s panTro2.chr12 226089 37 - 135371336 taaataaaCCTGGAATG-----ATTTTCCTGGTTTATAGAAG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 265395 37 - 136387465 taaataaaCCTGGAATG-----ATTTTCCTGGTTTATAGAAG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 237214 37 - 134511895 taaaTAAGTCTGGAATG-----ATTTTCCTAGTTTATAGAAA i rheMac2.chr11 C 0 C 0 s loxAfr3.scaffold_113 126724 33 - 3408981 TGAACAAACCTGGAAT------TTCCTTCTG---TAGATAAG i loxAfr3.scaffold_113 I 35 C 0 s otoGar1.scaffold_76152.1-9002 708 38 + 9002 --AACAAACCTGGAATGTTCTTTTTTTCCTTG--CACAGAAA i otoGar1.scaffold_76152.1-9002 I 39 C 0 s oryCun2.chrUn0106 704111 33 + 1032594 -AAACAAACCTAGAATA-----CTTTTCCTG---TAGAAAAG i oryCun2.chrUn0106 I 30 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 36121 34 - 51117 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 282501 168 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=67190.000000 s hg19.chrUn_gl000223 100909 44 + 180455 AATTACCAATGTA---GGTTTATATAAATAAGAGAAATAATAGGGCA s loxAfr3.scaffold_113 126757 42 - 3408981 AATAGCCAGTGTA---GGTTTATATAAAT-AGAGAAATAATA-GGCA i loxAfr3.scaffold_113 C 0 C 0 s oryCun2.chrUn0106 704144 39 + 1032594 AATAGCCAATGTA---GGTTTACATTGGGAA-----ACATTACagca i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 282669 43 + 667635 AATAACCAGGGTACATGATGTAAATAAGAAAG----GTAATCAAGCA i cavPor3.scaffold_248 I 168 C 0 s micMur1.scaffold_9962 36155 31 - 51117 ----------------GGTTTATATAAATAAAATAGATAATAGGGCA i micMur1.scaffold_9962 I 34 C 0 s otoGar1.scaffold_76152.1-9002 746 44 + 9002 AATAGCCAAAGTA---AGCTTGTATAAATAAAAGAAATACTAGGATA i otoGar1.scaffold_76152.1-9002 C 0 C 0 s rheMac2.chr11 237251 44 - 134511895 AATTGCCAATGTA---GGTTTATATAAATaagagaaataatagggca i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 265432 44 - 136387465 AATTGCCAATGTA---GGTTTATATAAATAAGAGAAATAATAGGGCA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226126 44 - 135371336 AATTACCAATGTA---GGTTTATATAAATAAGAGAAATAATAGGGCA i panTro2.chr12 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=177006.000000 s hg19.chrUn_gl000223 100953 140 + 180455 ATGTTCAAAGAAATGCGGCCTGAAAATTCTCTTGGAGTGAAGACAAATACAGGAGTTCACATGA-GAAAAACCT-ACC-------AATTGAAATACAAGATAAGTTAACAAAC--AAAA-AAAAGGTCCAAATTTAAGCAGATGGTAATGAA s panTro2.chr12 226170 140 - 135371336 ATGTTCAAAGAAATGCGGCCTGAAAATTCTCTTGGAGTGAAGACAAATACAGGAGTTCACATGA-GAAAAACCT-ACC-------AATTGAAATACAAGATAAGTTAACAAAC--AAAA-AAAAGGTCCAAATTTAAGCAGAGGGTAATGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 265476 142 - 136387465 ATGTTGAAAGAAATGCGGCCTGAAAATTCTCTTGGAGTGAAGACAAATACAGGAGTTCACATAA-GAAAAACCT-ACC-------AATTGAAATACAAGACAAGTTAACAAACAAAAAA-AAAAGTTCCAAATTTAAGCAGATAGTAATGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 237295 143 - 134511895 atgttcgaagaaatacggcctgaaaattctctcggagtgaagacaaatacaggagttcacgtgataaaaaacct-acc-------aattgaaatgcaagataagtcaaccaaaaaaaaa-aaaaggtccaaatttaagcagatggtaatgaa i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_76152.1-9002 790 137 + 9002 GTGCTTGCAGAAATATAGCCTGAAAACTTTTCAGGAGTAAAGATGAATGTGGGAGATCATGTTA-GAAGGACTTAACC-------AATTG----GCAAGATCAGTTACTAAAA--AAAA-AAAAGGCCCAAATTTAAGCAGACAGTAATAAA i otoGar1.scaffold_76152.1-9002 C 0 C 0 s micMur1.scaffold_9962 36186 128 - 51117 GCATTTGAAGAAACACAGGCTAAAAAATTTCCAGGATTGAAGACAAATAT-GGAGATCATATTA-GAGGACCT--ACC-------AATTG----AC-AGATCAGTTACC-------AAA-AAAAGGTTCAAATTTAAGCAGATGGTAATGAA i micMur1.scaffold_9962 C 0 I 181 s cavPor3.scaffold_248 282712 128 + 667635 ATGTTTGAAGAAAAGCAGGCTGAAA---CTCCAG----GAAGAC--ATATGGGAGCTCCTATGT-GAAAACTCT-ACC-------ATTTAAAA-GCAAGATCAGTAAACCCCT--CCAA-AAAAGGCCCAGAATTAAGTA-ATTATAAAAA- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 704183 129 + 1032594 acatttgaagaaaggtaggctgacag-tttccaaaaataaagacaaatataggagttcctttta-gaaaaaccc-acc-------aagtgaa----aagatca------cctt--ctaacaaaacatccaatcttaagcagatggtgataa- i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 126799 134 - 3408981 ATCCCTAGAGAAATACAGGCTGAAGATTTTCTAGGAGTGAAAAATAATATCGGAGTTCACATTG-AAAAACCAT-ACA-------AACTGAAAAGCAAGGTTGCTTT--------TTTA-AAACAGTCAAAATTTAAGCAAAGAGTAACTAA i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_960 140805 135 - 281655 ATACCCAAAGGAACTTGGCCTAAAAATTCTGGGTAAACAACAGCCAATCAGAGCGCACACTTGG-TATAAATAT-ACTGTATCCAAAGTAAAAAACAAAGCAATTCATC------AAAC-AAAATACC--------AGGGAATAACAATGAA i xenTro2.scaffold_960 N 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=32981.000000 s hg19.chrUn_gl000223 101093 55 + 180455 -ATGTC----------------------TGAAAATAAA--------GTATAAAGAGA--------------ACACCT---------------------GATAACCAACTAAAAGGAAAGAA s panTro2.chr12 226310 55 - 135371336 -ACGTC----------------------TGAAAATAAA--------GTATAAAGAGA--------------ACACCT---------------------GATAACCAACTAAAAGGAAAGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 265618 55 - 136387465 -ACATC----------------------TGAAAATAAA--------GTATAACGAGA--------------ACACCT---------------------GATAACCAACTAAAAGGAAAGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 237438 55 - 134511895 -acgtc----------------------tgaaaataaa--------gtaaatagaga--------------acacct---------------------gataaccaactaaaaggaaagaa i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_76152.1-9002 927 33 + 9002 -ACTAC----------------------TCAAAATAAA--------GTATAAAGAGA--------------ACATCT---------------------G---------------------- i otoGar1.scaffold_76152.1-9002 C 0 n 0 s cavPor3.scaffold_248 282840 117 + 667635 -ACTTCCAgggctggggatttagctcagtg-gcataagcgcctgccttgcaaggagacagtcgtgagttcgacccctggtaccaataaaaacgaaaaagacaa--aaaaaaaaaaaaaaaa i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 704312 54 + 1032594 -acttc----------------------tg-aaataaa--------gtttaaagaga--------------acatct---------------------gacaagcaacaaagggaaaagaa i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 126933 54 - 3408981 -ACTTC----------------------AG-AAATAAG--------GTATAGAGAGA--------------ATATCT---------------------GATAACAAACCAGAGAGAAAGAA i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_960 140940 47 - 281655 ACTGTA----------------------TTTAATTTGG--------GCCAAACAAGA--------------TC------------------------------TCAGCCAAAGTGAGAGAA i xenTro2.scaffold_960 C 0 N 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 36314 181 - 51117 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=15240.000000 s hg19.chrUn_gl000223 101148 37 + 180455 CAATG--CTTC----------TTGAAAGTGGGAGAGAAA-------Taaagtact-----g s rheMac2.chr11 237493 37 - 134511895 caATG--TTTC----------CTGAAAGTGGGAGAGAAA-------Taaagtacg-----g i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 265673 37 - 136387465 CAATG--CTTC----------TTGAAAGTGGGAGAGAAA-------Taaagtact-----g i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226365 37 - 135371336 CAATG--TTTC----------TTGAAAGTGGGAGAGAAA-------Taaagtact-----g i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 282957 45 + 667635 aa-----CTTCCACAGATAAACTAAATGT----TAAGAA-------CAGAACATTTCCTAA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 704366 30 + 1032594 ga-----tttc----------ctGAGTGG----GAGGAG-------AAAAGTGTC-----A i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 126987 46 - 3408981 AAGAGCACTTC----------CTGAAAATGGGAGAGAGATAAACAttaaagtgct-----g i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 36314 181 - 51117 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=71024.000000 s hg19.chrUn_gl000223 101185 53 + 180455 agaaaaaataat----------gctgattctgaaatcttata-ccagccaaactaaaaagcaaa s panTro2.chr12 226402 53 - 135371336 agaaaaaataat----------gctgattctgaaatcttata-ccagccaaactaaaaagcaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 265710 53 - 136387465 agaaaaaataat----------gctgattctgaaatcttata-ccagccaaactaaaaagcaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 237530 53 - 134511895 agaaaaaacaat----------gctgatgctgaaatcttata-ccagccaaactaaaaggcaag i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 36495 53 - 51117 cggaaaaataat----------tttgattctgaaatcacata-cctgccaaacaaaaaggtaat i micMur1.scaffold_9962 I 181 C 0 s cavPor3.scaffold_248 283002 63 + 667635 AAGTAAAGTGCTCAAAAACATTATTGATTCTAAAATCTTATA-CTAACCAAACTAAATGGCAAA i cavPor3.scaffold_248 C 0 I 6376 s oryCun2.chrUn0106 704396 55 + 1032594 AAGAAAAGTTAT--------TTTTTTTTTCTGAAATTTTATA-CTAGCCAGGCTAAAAGTCAAC i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 127033 41 - 3408981 aggaaaagtaaa-----------------------tcttatatccagccaaactaaggggcaaa i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=75525.000000 s hg19.chrUn_gl000223 101238 65 + 180455 aataagggaaaataaaagacattttcaaatatactagcacctggaaaatttatatccATCAAATg s panTro2.chr12 226455 65 - 135371336 aataagggaaaataaaagacattttcaaatatactagcacctggaaaatttatatccATCAAATg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 265763 65 - 136387465 aataagggaaaataaaagacattttcaaatatacaagcacctggaaaatttatatccATCAAATG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 237583 65 - 134511895 aataagggaaaataaaagacattttcaaatatacaagcacctggaaaatttatatccATCAAgtg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 36548 50 - 51117 aataaggaaaaacaaaagacattttcaaatatacatgaacttaga---------------aaatg i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 704451 52 + 1032594 AATAAGGA-----AAAGGATACTTTTAATTGTACAAGCACTTGGAAAATCAATATTC-------- i oryCun2.chrUn0106 C 0 I 14 s loxAfr3.scaffold_113 127074 65 - 3408981 gataagggaaaataaaagacatttctaaatataccagcacttggaaaatatatctccaactcatg i loxAfr3.scaffold_113 C 0 I 3400 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=75031.000000 s hg19.chrUn_gl000223 101303 147 + 180455 t------ggtacctcatgcctataatcccagca-tttgggaggctgaggcgggaggatcacttgaggccaagagtttcagactatcctgggtcacatagttagacctcatctctacaaataacaaaaaaatgtg-tgggcatagtggtgcacgcc s rheMac2.chr11 237648 145 - 134511895 t------ggtag-tcatgcctataatcccagca-tttgggaggctgaggcaggaggattacttgaggccaagagtttgagactatcctgggtcacatagttagaccccatctctacaagtaac-aaaaaatgtg-tgggcatggtggtgcacacc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 265828 152 - 136387465 GTATATAggtagctcatgcctataatcctagca-tttgggaggctgaggcgggaggatcacttgagtccaagagtttgagactatcctgggtcacatagttagaccccatctctacaaataac-aaaaaatgtg-tgggcatagtggtgcacgcc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226520 147 - 135371336 t------ggtacctcatgcctataatcccagca-tttgggaggctgaggcgggaggatcacttgaggccaagagtttcagactatcctgggtcacatagttagaccccatctctacaaataacaaaaaaatgtg-tgggcatagtggtgcacgcc i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_97593 4387 149 + 7049 g------agtggctcacacctataatcccagcaggttaggaggttgaggtgagaggattgcctgagcccatgggttcaagaccagactgggcaacttggcgagacctaatctctacaataaatcaaaaaattagccaggcatggtgaagtatgcc i tarSyr1.scaffold_97593 N 0 C 0 s micMur1.scaffold_9962 36598 27 - 51117 t------a---------------catcctagca----------------------------------------------------------------------------------cacatgtcaagaaaa------------------------- i micMur1.scaffold_9962 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704503 14 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=62072.000000 s hg19.chrUn_gl000223 101450 91 + 180455 tgtagtcccagttactcaggaggctgaggtggaaggatggtttgagcacaggagtttgaggctgtagttggccatgactatgccactgcac s rheMac2.chr11 237793 91 - 134511895 tgtagtcccagctactcaggaggctgaggtggaaggatggtttgagcacagcagtttgaggcgatagttggccatgactgtgccactgcac i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 265980 91 - 136387465 tgtagtcccagctactcaggaggctgacgtggaaggatagtttgagcacaggagtttgaggctgtagttggccatgactgtgccactgcac i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226667 91 - 135371336 tgtagtcccagttactcaggaggctgaggtggaaggatggtttgagcacaggagtttgaggctgtagttggccatgactatgccattgcac i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_97593 4536 85 + 7049 tgtagttccagtgacttggaaggctgaggtaaaatgatcgcgtgatcccagcaagtcaaggctgtgg-tggccatgagcatgccac----- i tarSyr1.scaffold_97593 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 36625 0 - 51117 C e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704503 14 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_66145 3809 54 + 11585 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=21131.000000 s hg19.chrUn_gl000223 101541 37 + 180455 tttacactgggcaacagaaccagac-tctgtctctaaa s tarSyr1.scaffold_97593 4621 36 + 7049 -tCAAAAAATAAAAATAAAGAAAAA-TCAATACCTAAA i tarSyr1.scaffold_97593 C 0 I 17 s panTro2.chr12 226758 37 - 135371336 tttacactgggcaacagaaccagac-tctgtctctaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 266071 37 - 136387465 tttacactgggaaacagaaccagac-tctgtctctaaa i ponAbe2.chr12 C 0 I 29 s rheMac2.chr11 237884 37 - 134511895 tttacactgggcaaaagaaccagac-tctgtctctaaa i rheMac2.chr11 C 0 I 27 s choHof1.scaffold_66145 3863 38 + 11585 TTTACTGTGGTAGACAATAGCAAATGTCTGTTTTATAA i choHof1.scaffold_66145 I 54 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 36625 0 - 51117 C e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 704503 14 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=37849.000000 s hg19.chrUn_gl000223 101578 78 + 180455 -aaaa------aaaaaTTACACCCTATAGAGACAACA-TTAAGACACAGAAAGAATTGGTGGGAAGCTGGATACAACGGTGAGCA-C s rheMac2.chr11 237948 54 - 134511895 -aaaa------aaaaaataCACCCTATACAGACAACA-TTAAGACACAGAAAGAATTGGTGG------------------------- i rheMac2.chr11 I 27 C 0 s ponAbe2.chr12 266137 78 - 136387465 -aaaa------aaaaattaCACCCTATAGAGACAACA-TTAAGACACAGAAAGAATTGGTGGGAAGCTGGATACAACGGTAAGCA-C i ponAbe2.chr12 I 29 C 0 s panTro2.chr12 226795 78 - 135371336 -aaaa------aaaaaTTACACCCTATAGAGACAACA-TTAAGACACAGAAAGAATTGGTGGGAAGCTGGATACAACGGTGAGCA-C i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_97593 4674 78 + 7049 -AAAGTTTTTCAAAATTTACCTTCAATCAAGAAAGTGTTTTACTCTCACAAAGATTATATAG--------ATTCACTGATAAATATC i tarSyr1.scaffold_97593 I 17 C 0 s micMur1.scaffold_9962 36625 52 - 51117 -aaaa------aaaa----------------aaaaca-----------gaaggaattaatgggaagctggatacaatggtgagaa-c i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 704517 52 + 1032594 -AAGA------AAAA------------------AACA---------CAGAAGGAATTAGTGGGAAGCTATATATAATGGTGAGCA-A i oryCun2.chrUn0106 I 14 C 0 s choHof1.scaffold_66145 3901 68 + 11585 ATAGA------AAAA-------CACATTAAGAACATA-AAAGAACACTCCAGGAATT----GGAAGCCAGATACAACAATAATCA-T i choHof1.scaffold_66145 C 0 C 0 e dasNov2.scaffold_23486 47417 0 + 54585 I e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=-3558.000000 s hg19.chrUn_gl000223 101656 28 + 180455 TGAAATCAGCAGAAC------ATAAAT-C----TATTGA--- s rheMac2.chr11 238002 28 - 134511895 ----AGCAGCAGAAC------GTAAAT-CTAAATATTGA--- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266215 28 - 136387465 TGAAATCAGCAGAAC------ACAAAT-C----TATTGA--- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226873 28 - 135371336 TGAAATCAGCAGAAC------ATAAAT-C----TATTGA--- i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_97593 4752 29 + 7049 TGACAAAAGCCAATT------TTCATTAC----TATTCA--- i tarSyr1.scaffold_97593 C 0 C 0 s micMur1.scaffold_9962 36677 38 - 51117 tgaaaccagtaaaacatactgataaat-ctaaatactga--- i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 704569 18 + 1032594 TGAAGTGAGTAAAAT------ATA------------------ i oryCun2.chrUn0106 C 0 I 385 s dasNov2.scaffold_7587 88961 34 + 154172 taaaATCAA-AAAAC------AAAAAC-ATTTTTACTGTTTT i dasNov2.scaffold_7587 I 2377 C 0 s choHof1.scaffold_66145 3969 25 + 11585 TGAAATC------AT------TAAAAC-A----CACTGATAA i choHof1.scaffold_66145 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr16 28533288 0 + 51890894 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=7978.000000 s hg19.chrUn_gl000223 101684 22 + 180455 TTCAAACACA-----------------------TCT--GAA--CTAAAA s rheMac2.chr11 238030 22 - 134511895 TTCAAACACA-----------------------TCT--GAA--CTAAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266243 22 - 136387465 TTCAAACACA-----------------------TCT--GAA--CTAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226901 22 - 135371336 TTCAAACACA-----------------------TCT--GAA--CTAAAA i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_97593 4781 19 + 7049 CCTAGACAAG-----------------------TTA--AAA--CCG--- i tarSyr1.scaffold_97593 C 0 C 0 s micMur1.scaffold_9962 36715 45 - 51117 ttctaACACAGTTTAAATGTGCTTCCTTAAAGCCTT--GAA--CTAAAA i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 704972 34 + 1032594 TTTAAACATA-----------TTTCCTCATGCCCCA--GAA--CTAAAA i oryCun2.chrUn0106 I 385 C 0 s dasNov2.scaffold_7587 88995 21 + 154172 TCCTCACACA-----------------------CCA--GAA--CTAAA- i dasNov2.scaffold_7587 C 0 C 0 s choHof1.scaffold_66145 3994 24 + 11585 ATCTAAAAGA-----------------------TTATTGAA--CAAAAA i choHof1.scaffold_66145 C 0 N 0 s danRer6.chr4 22794308 22 - 71658100 TCCAAACGCA-----------------------GAG--AAAACCTAT-- i danRer6.chr4 n 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=39693.000000 s hg19.chrUn_gl000223 101706 45 + 180455 TTATAATCAGCTA-CA--ATTTAAGCATGTGTGTGATGCAAATAGATG s rheMac2.chr11 238052 47 - 134511895 TTATTATCAGCTA-TATGACTTAAGCATGTGTGTGATGCAAATAGATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266265 45 - 136387465 TTATAATCAGCTA-CG--ATTTAAGCATGTGTGTGATGCAAATAGATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226923 45 - 135371336 TTATAATCAGCTA-CA--ATTTAAGCATGTGTGTGATGCAAATATATG i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_97593 4800 39 + 7049 --ATAACCAATAACCA--AGAAAAAAATGT-TTTCACAAAAGTA---- i tarSyr1.scaffold_97593 C 0 N 0 s micMur1.scaffold_9962 36760 45 - 51117 TTACAGTCAGGTA-CA--ATTTGGGTATGGATATGATGCAAATAGATG i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 705006 44 + 1032594 TTACAATCTGCTA-CT--ATTT-GGCATCAGTGTAACACAAATAGATG i oryCun2.chrUn0106 C 0 C 0 s dasNov2.scaffold_7587 89016 44 + 154172 TTAAAAGCAGCTA-CT--ATAT-AGTATAGATATGATGCAAACAGGTG i dasNov2.scaffold_7587 C 0 C 0 s danRer6.chr4 22794330 40 - 71658100 ATATAATAAGTCA-TG--ACTAAGA---GTAAGTGGCAAAAACAAA-- i danRer6.chr4 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=119897.000000 s hg19.chrUn_gl000223 101751 135 + 180455 AGAATCATAAAAAATGAAG----------GTATA----AAGAAACATCTTTCACTTGGGAAAAGAGAAAATGCAACTGTTTAGA-CTTTGTTTTAAAGGGAAACGTTC-AGTGTGCCTGTGAACAACTTAA-AGACAATCAAGCACTAAAAA s rheMac2.chr11 238099 135 - 134511895 AGAATCATAGAAAATGAAG----------GTATA----AAGAAACATCTTTCACTTGGGAAAAGAGAAAATGCAACTGTATAGA-CTTTGGTTTAAAGGGAAACGTTC-AGTGGGTCTGCGAATGACTTAAGAGACAATCGAGCACT-AAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266310 135 - 136387465 AGAATCATAGAAAATGAAG----------GTATA----AAGAAACATCTTTCACTTGGGAAAAGAGAAAATGCAACTGTTTAGA-CTTTGGTTTAAAGGGAAACGTTC-AGTGTGCCTGTGAACAACTTAA-AGGCAATCAAGCACTAAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 226968 135 - 135371336 AGAATCATAAAAAATGAAG----------GTATA----AAGAAACATCTTTCACTTGGGAAAAGAGAAAATGAAACTGTTTAGA-CTTTGTTTTAAAGGGAAACGTTC-AGTGTGCCTGTGAACAACTTAA-AGACAATCAAGCACTAAAAA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 36805 134 - 51117 TGAATGAAAGAAAATGaaaa--------tgtata----aagaaccttctttcatttgggaaaagaaaatatg-aactg--taga-ctttggtttaaaggaaaaagttg-agtgtgtctatgaacaacttaa-aggcaatcaaccactaaaaa i micMur1.scaffold_9962 C 0 C 0 s oryCun2.chrUn0106 705050 133 + 1032594 ACAATAACAGAAAATAAAAAGTATAG--TGTATA----AAAGAACCATTTTCATTTGAAAAAAGATAC----CAACTT--TAGA-CTTTGTTTAAAAAGGAAAAGTTG-GAGATGTCTGTGATAGACTTAA-AGGTGAC----CACTAAAAA i oryCun2.chrUn0106 C 0 I 6935 s dasNov2.scaffold_7587 89060 96 + 154172 AGACTGATAGGAAATAAAG---------TGTACA---------------------------------------AACTT--TAGA-CTTTGATTTAAAGAAAAAGGTTCAAGTATATATGTAAATAACTTAA-AGATAAT----CACTTAAAA i dasNov2.scaffold_7587 C 0 I 2 s danRer6.chr4 22794370 151 - 71658100 AGAAACTGTAGAAATGCAAATAAGGGTTAGTAAAGCAGAAGTGAAAAGTCTAATATGGGTAAGAATAAATAAAAAGTGGCAAGAGAAGTGGGACAGAGAAAAGAAAGG-AAGGCATTTGTATGCAGTTCAAAAGGCTGTTAAACACAAAAGA i danRer6.chr4 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=38289.000000 s hg19.chrUn_gl000223 101886 80 + 180455 TGTA-------GGGAGGGAGCAGGGAGGAAGACAA--GTACAGCTTCCCAAA-------------------CAGTAGAG--AAA-----AAACCGACTGAGAAAGAACACATTCA- s rheMac2.chr11 238234 76 - 134511895 TGTA-------GGGAGGGAGCGCGGAGG-----AA--GTAGAGCTTCCAAAA-------------------CAGTAGAG-AAAA-----AAACCGACTGACAAAGAACACATTCA- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266445 82 - 136387465 TGTA-------GGGAGGGAGCAGGGAAGAAGACAA--GTACAGCTTCCAAAA-------------------CAGTAGAGAAAAA-----AAACTGACTGAGAAAGAACACATTCA- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227103 80 - 135371336 TGTA-------GGGAGGGAGCAGGGAGGAAGACAA--GTACAGCTTCCCCAA-------------------CAGTAGAG--AAA-----AAACCGACTGAGAAAGAACACATTCA- i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 36939 78 - 51117 tat------------gtaaggaaagaggaagataaacgtacaacttccaaaa-------------------caagaaag-aaaa-----aaatatacagagacagaacatgttca- i micMur1.scaffold_9962 C 0 I 102 s dasNov2.scaffold_7587 89158 88 + 154172 CATAGCAAAAGGGGAGATAAGGGAGAGGGAGAAAT--GTAAAATTTCCAAAA-------------------CAGCAGTGAAAAG-----AAAAATACAGA-AAAGAACACGTTCA- i dasNov2.scaffold_7587 I 2 I 3 s danRer6.chr4 22794521 105 - 71658100 ------GTCAGTAGAGGTAATAGGCGAGACG--AA--ATAGTGATAACAAGATTAAGATTGGGTCATTGTTTATTAAAT-AAAACACTTAAATTGATACAAAAACATGAAACTTGA i danRer6.chr4 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=47813.000000 s hg19.chrUn_gl000223 101966 94 + 180455 TGTTAG---------------------------------------------------------------------------AAGAAACATACTGAAAACAAAACTAAGACAGTTTGAAACTTATGAGAT-ACACCAAAG-AAAAAATACAAATTAGAAAATAAAGAAATGA s rheMac2.chr11 238310 91 - 134511895 TGTTAG---------------------------------------------------------------------------AAGAAACATACTGAAAACATAACTAAGACAGTCTGAAACTCATGAGAT-ACACCAAAGAAAAAAATACAAATTAGACAAT----AAATGA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266527 95 - 136387465 TGTTAG---------------------------------------------------------------------------AAGAAATATACTGAAAACAAAACTAAGACAGTTTGAAACTTATGAGAT-ACACCAAAGAAAAAAATACAAATTAGAAAATAAAGAAATAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227183 94 - 135371336 TGTTAG---------------------------------------------------------------------------AAGAAACATACTGAAAACAAAACTAAGACAGTTTTAAACTTATGAGAT-ACACCAAAG-AAAAAATACAAATTAGAAAATAAAGAAATGA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 37119 169 - 51117 agttagtaggaagcaataaaaaaaaacaacctcattgagatacacatattggataaataaacacagctatgtgttgtttcaaagagacacacctaaattataactaagaaagtttgaaactaatgagataaaaTCAaag-aaaaaaca-aaattagaaaacaaaggaatga i micMur1.scaffold_9962 I 102 C 0 s dasNov2.scaffold_7587 89249 91 + 154172 TAACAG---------------------------------------------------------------------------ATCACAGGAAATGAGAGGAGAAATAGAGCTAGCAAAAGAAAAAGAGAT---AGCAGAG-AAGAAATA-AAACCAGTGACTGGAGTAATGA i dasNov2.scaffold_7587 I 3 N 0 s danRer6.chr4 22794626 85 - 71658100 --TTAT---------------------------------------------------------------------------GTGAGGGATGTAGTGAAGAAGAGTCAG-----TTGAA---CATGTGAT-ACTAAAATGCAAAAGATATGAAAAGCAGAGGGAGGAAATGA i danRer6.chr4 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=45787.000000 s hg19.chrUn_gl000223 102060 63 + 180455 AGAAAGA--TATCAGGTAAATGCTACATCAATGAAAGCTGATACTCACAGAATTAGCAT-AAATAA s rheMac2.chr11 238401 64 - 134511895 AAAAAGA--TATCAGGTAAATGCTAAATCAATGAAAGCTGATACTCACAGAATTAGCACAAAATAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266622 63 - 136387465 AAAAAGA--TATCAGGTAAATGCTAAATCAATGAAAGCTGATACTCACAGAATTAGCAT-AAATAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227277 63 - 135371336 AAAAAGA--TATCAGGTAAATGCTACATCAATGAAAGCTGATACTCACAGAATTAGCAT-AAATAA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 37288 65 - 51117 aaaaagatgtatcaggtaaatgccaagtaaatgaaagctga-AATTACAAAATTAGTGCAAGTTAA i micMur1.scaffold_9962 C 0 C 0 s danRer6.chr4 22794711 60 - 71658100 GAAAAGA--TCTAAGGGAAATAGGGATTCAGGAAA---TAACATTAAAAGGTTTACTAA-ATACAA i danRer6.chr4 C 0 n 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=30428.000000 s hg19.chrUn_gl000223 102123 37 + 180455 TTGCATTTTTACATCAGTTTAACTCAAGGGACTTAAA s rheMac2.chr11 238465 37 - 134511895 TTGCATTTTTACATCAGTTTAACTCAAGGGGCTTAAA i rheMac2.chr11 C 0 I 312 s ponAbe2.chr12 266685 37 - 136387465 TTGCATTTTTACATCAGTTTAACTCAAAGGACTTAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227340 37 - 135371336 TTGCATTTTTACATCAGTTTAACTCAAGGCACTTAAA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 37353 37 - 51117 CTGCATTTTTGCATCAGTTTAACTCAGGGGAATTAAA i micMur1.scaffold_9962 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr4 22794771 0 - 71658100 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=54133.000000 s hg19.chrUn_gl000223 102160 92 + 180455 CTAAAGGCATTTCTTATTTATACATCCCAAGTAGCATGACGGTCTCACTACAGCCAACAGACTC---------CTCTTGCCCAGGCACCTCCACGTGGTTC s rheMac2.chr11 238814 87 - 134511895 CTAAAGGCATTTC----TTATGCATCCCAAGTAGCATGAAGGTCTCACTACAGCCAACAG-CTC---------CTCTTGCTCAGGCACCTCCGCGTGGGTC i rheMac2.chr11 I 312 C 0 s ponAbe2.chr12 266722 88 - 136387465 CTAAAGGCATTTC----TTATGCATCCCAAGTAGCATGACGGTCTCACTGCAGCCAACAGACTC---------CTCTTGCCCAGGCACCTCCACGTGGTTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227377 88 - 135371336 CTAAAGGCATTTC----TTATGCATCCCAAGTAGCATGACGGTCTCACTACAGCCAACAGACTC---------CTCTTGCCCAGGCACCTCCACGTGGTTC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 37390 96 - 51117 CTGAAGGCATTTC----CTATGTACCCTACTTGGTGTGAAGGTCTCCCTAAAGCTTCCAGGTGCACACATATGCTCTTGCCTATCCA-CTCCAGGTTTTGC i micMur1.scaffold_9962 C 0 I 372 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr4 22794771 0 - 71658100 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=55935.000000 s hg19.chrUn_gl000223 102252 109 + 180455 ACCATCCCTCCTGGCTCATCAATACTCGGGCATTATTCTTCTATGCTAGATGGCTTTTCTATAATATATAATTTCACAAATCAAAACACCTACAAAGTTGTAAGATTTA s rheMac2.chr11 238901 108 - 134511895 ACCATCCCTACTGGCTCACCAATACTCGGCCATGATTCTTCTATGCTAGATGGCTTTTCTACAATATATAATTTCACAAATCAAAACACCTACAAAGCTGTAAGATTT- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266810 109 - 136387465 ACCATCCCTCCTGGCTCATCAATACTCGGCCATTATTCTTCTATGCTAGATGGCTTTTCTATAATATATAACTTCACAAATCAAAACACCTACAAAGTTGTAAGATTTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227465 109 - 135371336 ACCATCCCTCCTGGCTCATCAATACTCAGGCATTATTCTTCTATGCTAGATGGCTTTTCTATAATATATAATTTCACAAATCAAAACACCTACAAAGTTGTAAGATTTA i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 37486 372 - 51117 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr4 22794771 0 - 71658100 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=16818.000000 s hg19.chrUn_gl000223 102361 44 + 180455 TGCCCATTAGGGAGGTTGAGATGGAGACTAAACATGATTTGAAA s panTro2.chr12 227574 44 - 135371336 TGCCCATTAGGGAGGTTGAGATGGAGACTAAACATGATTTGAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 266919 44 - 136387465 TGCCCATTAGGGAGGTTGAGATGGAGACTAAATGTGATTTGAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239009 39 - 134511895 -----ATTAGGGAGGCTGAGGTGGAGACTAAATGTGATTTGAAA i rheMac2.chr11 C 0 C 0 s danRer6.chr17 2777614 15 - 49469313 ---------------TTGTTGTG-----TAAACAC--------- i danRer6.chr17 n 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 37486 372 - 51117 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=50603.000000 s hg19.chrUn_gl000223 102405 111 + 180455 GTAGGA-ACAGAGAGAATGGAGAGAAGATTTA----------AACATGAT----TATCAGT------ATCCTC-C----TCTGAGACCCATTT------------AAATTACATACAGGAATACAGTACACACAAACACAC---CTCTAAAA s rheMac2.chr11 239048 119 - 134511895 GTAGGA-ACAGAGAGAATGGAGAGAAGATTTA----------AACATGACGTCATATCAGT------ATCCTC-CTCTATCTGAGACTCATTT------------AAATTACATACAGGAATATAGCATGCACAAACACAC---CTCTAAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 266963 111 - 136387465 GTAGGA-ACAGAGAGAATGGAGAGAAGATTCA----------AACATGAT----TATCAGT------ATCCTC-C----TCTGAGACCCATTT------------AAATTACATACAGGAATACAGCATGCACAAACACAC---CTCTAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227618 111 - 135371336 GTAGGA-ACAGAGAGAATGGAGAGAAGATTTA----------AACATGAT----TATCAGT------ATCCTC-C----TCTGAGACCCATTT------------AAATTACATACAGGAATACAGTACGCACAAACACAC---CTCTAAAA i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 37858 144 - 51117 GTAAGACAAAAATAGAATAAAACAAAAATTTCCCTTTCtgttaatatggc----aaacagcctggaaattctcac----cctaaaagtcattgcagtcccaatgaaaatctcagcaagttattttgtagacactggcaaactgattctaaag i micMur1.scaffold_9962 I 372 I 10 s danRer6.chr17 2777629 94 - 49469313 ----------AAGAAAGTGTACAGcgaactgc----------accaagag----ggaaaac------gaactc-t----agtgcaattcaacc------------aaacta-----aagaagacag---gtgtgaaaacac---ccTTAAAA i danRer6.chr17 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=7822.000000 s hg19.chrUn_gl000223 102516 30 + 180455 --GAAAAGGGAggccaggggcggtggctcatg s ponAbe2.chr12 267074 30 - 136387465 --GAAAAGGGAggccaggcacggtggctcata i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227729 30 - 135371336 --GAAAAGGGAggccaggggcggtggctcatg i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 38012 28 - 51117 --gagataaaagactcagacta--ggctcacg i micMur1.scaffold_9962 I 10 C 0 s danRer6.chr17 2777723 32 - 49469313 TAATACAGATGAGCCAAAAACAATTGCAAATG i danRer6.chr17 C 0 n 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 239167 0 - 134511895 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=109061.000000 s hg19.chrUn_gl000223 102546 275 + 180455 cctgtaatcccagcactttgggaggccgaggc-ggcggat--cacaaggtcacgagatcgagaccatcctggctaacacggtgaaaccccgtctctac--taaaaatgca----------------------------------aaaaattagccaggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgttaacccaggaggcagagcttgcagtgtgccgagattgcgccactg----cactccag-ctgggcaacagagcgagactccatctc---aaaaaaaaaaaaaaaag s ponAbe2.chr12 267104 277 - 136387465 cctgtaatcccagcactttgggaggccgaggc-ggcggat--cacaaggtcacgagatcaagaccatcctggctaacacggtgaaaccccatctctac--taaaaatgca----------------------------------aaaaattagccaggcgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgttaatgcaggaggcagagcttgcagtgtgctgagattgcgccactg----cactccagcctgggcaacagagcaagactccgtctc--aaaaataaaaaaaaaaag i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 227759 278 - 135371336 cctgtaatcccagcactttgggaggccgaggc-ggcagat--cacaaggtcacgagatcgagaccatcctggctaacatggtgaaaccccgtctctac--taaaaatgca----------------------------------aaaaattagccaggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgttaacccaggaggcagagcttgcagtgtgccgagattgcaccactg----cactccag-ctgggcaacagagggagactccaactcaaaaaaaaaaaaaaaaaaag i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 38040 310 - 51117 cctgtaatcctagcactctgggaggctgaggcgggcggattgctcaaggtcaggagttcaaaaccagcctg--------agcgagaccccgtctctaccataaaaatagaaagaaattaattggccaactaatatatataatataaaaatcagctgggcatggtggctcgtgcctgtagtcccagctactcgggaggctgaggcagcaggatcgcttgagcccaggagtttgaggttgctgtgagctaggctgacgccacggcactcactctagcctaggcaagaaagcgagactctgtctc--aaaaacaaaacaaaac-- i micMur1.scaffold_9962 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 239167 0 - 134511895 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=56285.000000 s hg19.chrUn_gl000223 102821 115 + 180455 aaaaGGGAACTACATAAA--CAGA--AGCCAATATGATATTT-------------------------------------------TGATAAATTTTTAATAAACAGTAAGCCAAAAATCTGG--TAACTGACTTCCGTGAGCAAAAGCTCT--CCCAGAGGTAAGC s micMur1.scaffold_9962 38350 165 - 51117 aaaacaaaacaaaacagactcagactagccgacacagtatttaaggatacgttggaggaatgacactacctgacttcaagacttattataaagctatagtaatcaagaaagtgaaagattagactaattgatcaatg-gaacagaatacagagcccagaaatagac i micMur1.scaffold_9962 C 0 C 0 s rheMac2.chr11 239167 114 - 134511895 AAAAGGGAAATACGTAAA--CAGA--AGCCAGTAAGATATTT-------------------------------------------TGATAAATTTTTAATAAACAGTAAGCCAAAAATCTGG--TAACTGACTTCCCTGAGCAGAAGCTCT---CCAGAGGTAAGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 267381 115 - 136387465 aaaaGGGAACTATGTAAA--CAGA--AGCCAATATGATATTT-------------------------------------------TGATAAATTTTTAATAAACAGTAAGCCAAAAATCTGG--TAACTAACTTCCGTGAGCAGATGCTCT--CCCAGAGGTAAGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 228037 115 - 135371336 aaaaGGGAACTACGTAAA--CAGA--AGCCAATATGATATTT-------------------------------------------TGATAAATTTTTAATAAACAGTAAGCCAAAAATCTGG--TAACTGACTTCCGTGAGCAAAAGCTCT--CCCAGAGGTAAGC i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_112208.1-47537 12649 0 - 47537 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=54326.000000 s hg19.chrUn_gl000223 102936 104 + 180455 TGATGCACAGCAAACCA------TCTCTCCCACAGA-AGCCCCAAAAGCT-------TTGGGAACAGTCATCCTGCATGATGAGAATGAGGTGTGAACTGTAAACAGCTAAAAGCAGT s panTro2.chr12 228152 104 - 135371336 TGATGCACAGCAAACCA------TCTCTCCCACAGA-AGCCCCAAAAGCT-------TTGGGAACAGTCATCCTGCATGACGAGAATGAGGTGTGAACTGTAAACAGCTAAAAGCAGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 267496 104 - 136387465 TGATGCACAGCAAACCA------TCTCTCCCACAGA-AGCCCCAAAAGTT-------TTGGGAACAGTCATCCTGCATGACGAGAATGAGATGTGAACTGAAAACAGCTAAAAGCAGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239281 104 - 134511895 TGATGCACAGCAAACCA------TCTCTCCCACAGA-AGCCCTAAAAGCT-------CTGGGAACAGTCATCCTGCATGAGGACAATGAGGTGTGAACTGAAAATAGCTAAAAGCAGT i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 38515 79 - 51117 ccatataaatacaatcaactgattatttgtcaaagg-agc----aaagatgatacaatggagaagagtctttt-------------------------------cagcaaatggt--- i micMur1.scaffold_9962 C 0 C 0 s tupBel1.scaffold_103331.1-57811 53202 101 - 57811 TGGTGAACAGCAAACCA------TCTGCCCCATAGACATCCCCAAACATT-------TCCAGACCAAGTATCT-GAATGGGAGGAATGAGGTGTGAGATGACAAGAAGGAAAGTT--- i tupBel1.scaffold_103331.1-57811 I 1616 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_76152.1-9002 960 0 + 9002 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=87668.000000 s hg19.chrUn_gl000223 103040 120 + 180455 ATATGAATTAGGCTCCCAGGTCCCACCCACCTAGGGTCTCCAGGGTGGGTGTTACTCAGCCA---ACACATG---ACTACCT---AACATGCCAGGGGT-GCTAGGTACTCTTAACAAAATCCAggctgg s panTro2.chr12 228256 120 - 135371336 ATATGAATTAGGCTCCCAGGTCCCACCCACCTAGGGTCTCCAGGGTGGGTGTTACTCAGCCA---ACACATG---ACTACCt---aacatgccagtggt-gctaggtactcttaacaaaatccaggctgg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 267600 123 - 136387465 ATATGAATTAGGCTCCCAGGTCCCATCCACCTAGGGTCTCCGGGGTGGGTGTTACTCAGCCA---ACACATGACCACTACCT---AACATGCCAGTGGT-GGTAGGTACTCTTAACAAAATCCAggctgg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239385 120 - 134511895 ATACGAATTAGGCTCCCAGGTCCCACCCACCTAGGGTCTCCAGGGTGGGTGTTACTCAGCCa---acacatg---actacct---aacacgccagtggt-gctaagtactcttaacaaaatccaggctgg i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 38594 103 - 51117 actagaactggacattcacatgcaa---------------aaacatgaatctaaacagagaatttacacc------ctttacaaaaattaattcacaatcaataacagatctaaatg------tggccgg i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_81449.1-45666 36318 114 + 45666 ATACGAATTTGACTCTCATGTCCCACCTCCCCAAGGTGTCAGAGGTGGATGTTAATCAGGAA---ACACTGA---GCTTCAC---AGTATGTCCATGGT-GACAGGTGCTCTTAACA------AAGTTGG i otoGar1.scaffold_81449.1-45666 I 35628 C 0 s tupBel1.scaffold_103331.1-57811 53303 117 - 57811 GTACAAATTGGGCTCTCAGGTCCCACCCACC-AGGGTCTCTGGAGTGGGTATCACTCAACAA---ATACATA---ACTAC-----AAAACGCCCATGGT-ACCAAGTGCTCTTTACTGGTCTCAAGCAGG i tupBel1.scaffold_103331.1-57811 C 0 I 669 e vicPac1.scaffold_273630 650 13 - 820 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=78832.000000 s hg19.chrUn_gl000223 103160 131 + 180455 gcatggtgattcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaatatggtgagactctgtctctattaaaaacacaaaa---------------------------------attag s panTro2.chr12 228376 131 - 135371336 gcacggtgattcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaatatggtgagactctgtctctattaaaaacacaaaa---------------------------------attag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 267723 131 - 136387465 gcgtggtggttcacacttgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaatatggtgaaactccgtctctactaaaaacacaaaa---------------------------------attag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239505 131 - 134511895 gcaccgtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgagctcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaaaatacaaaa---------------------------------actag i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 38697 156 - 51117 atgcagtagctcacgcctgtaatcatagcactctgggaggccgaggagggcggattgctcgagctcaggagttcgaaaccagcctg--------agcaagaccctgtctctactataaatagaaagaaattaattggccaactaatatatatagaaaaaattag i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_81449.1-45666 36432 64 + 45666 ----AGTAGATGAAGAAAAGAGTCACGGCA-------------------------------------------------------G--------AGAGGCACACAGGTGCTGTTCAAGACAGAATG---------------------------------ATCAG i otoGar1.scaffold_81449.1-45666 C 0 I 58 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 53420 669 - 57811 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=73825.000000 s hg19.chrUn_gl000223 103291 108 + 180455 ccaggcatgctggtgtacacctgcaaccccagctactcaggaggctgagacaggagaatcgcttgaacccatgaggtggaggttgcag-tgagtagaaatcgcaccact s panTro2.chr12 228507 108 - 135371336 ccaggcatgctggtgcacacctgcaaccccagctactcaggaggctgagacaggagaatcgcttgaacccatgaggtggaggttgcag-tgagtagaaatcgcaccact i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 267854 108 - 136387465 ccaggcgtgctggtgcacacctgcaaccccagctactcgggaggctgagacaggagaatcacttgaacccatgaggcggaggttacag-tgagtagagatcgcaccact i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239636 109 - 134511895 cgtgatgtggtggtgcacacctgcaatcccagctactcgggaggctgggacaggagaatcgcttgaacccatgaggtggaggttgcagttgagtagagatcgcaccact i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 38853 107 - 51117 ctgggcatggtggcacat-cctgtagtcccagctacttgggaggctgaggcagtaggattgcttgagcccaggagtttgaggttgctg-tgagctaggctgatgccaca i micMur1.scaffold_9962 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 53420 669 - 57811 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_81449.1-45666 36496 58 + 45666 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=36543.000000 s hg19.chrUn_gl000223 103399 77 + 180455 gcactccagcctgggcgacacag-aagactacatctc---aaaacaaaaaaacaaaaaacaaacaaaaaaTCCAAGCAGGT s panTro2.chr12 228615 77 - 135371336 gcactccagcctgggcgacacag-aagactacatctc---aaaacaaaaaaacaaaaaacaaacaaaaaatccaaacaggt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 267962 77 - 136387465 gcactccagcctgggtgacacag-aagactccatctc---aaaacaaaaaaacaaaaaacaaacaaaaaaTCCAAGCAGGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239745 74 - 134511895 gcactccagcctgggtgacacagcaagactctgtctc---aaaacaaaa----aacaaacaaacgaaaaatccgagcaggt i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 38960 58 - 51117 gcactctagtctgagtaacacagtgagactctgtctcaaaaaaacaaacaaacaaaaa----------------------- i micMur1.scaffold_9962 C 0 I 1862 s otoGar1.scaffold_81449.1-45666 36554 36 + 45666 GCCTTCTATTCCAGGCAGTGC-GAAAGGCTCAGACTC-------------------------------------------- i otoGar1.scaffold_81449.1-45666 I 58 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e tupBel1.scaffold_103331.1-57811 53420 669 - 57811 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64172052 590 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=58789.000000 s hg19.chrUn_gl000223 103476 106 + 180455 AAGGGACAGAGTCATGAGACAGAGGGAGGCACAGGTGCTGTTTCAGACACGGTGATCAGGGCAGCTCTCTGATGAGGTTATACCTAGGCAGAAATGCAAGCGCTGt s otoGar1.scaffold_81449.1-45666 36590 43 + 45666 -----ACAGATTCAAAAGGTGGAGTTAGGAA----TTTTGTTTCACACAG------------------------------------------------------TT i otoGar1.scaffold_81449.1-45666 C 0 C 0 s rheMac2.chr11 239819 106 - 134511895 aagggacagggtcatgagagagagggaggcacgggtgctgtttcagacagggggatcagggcagctctctgatgagatgatatccgggcagaaatgcaagtgctgt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 268039 104 - 136387465 AACGCACACAGTCATGAGAGAGAGGGAGGCACAGGTGCTGTTTCAGACACAGTGATCA--GCAGCTCTATGATGAGGTGATACCTAGGCAGAAATGCAagtgctgt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 228692 106 - 135371336 aagggacagagtcatgagacagagggaggcacaggtgctgtttcagacagggtgatcagggcagctctctgatgaggttatacctaggcagaaaTGCAAGCGCTGt i panTro2.chr12 C 0 C 0 s equCab2.chr8 64172642 101 - 94057673 aagggacagagtcc----agggcggcaagcacaggcactggttcggatggggggatcaggg-agccctctggtgaggggacatttgggcagaaaccctagcgatgt i equCab2.chr8 I 590 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e tupBel1.scaffold_103331.1-57811 53420 669 - 57811 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=73236.000000 s hg19.chrUn_gl000223 103582 115 + 180455 gagaagccactgaaaggctt----ctcgctctgactggtatttt---gagatcatcctgactgctgtggaag-----agggagggggtt----gtgtaagaggagataccgggg----------------------agaccagtt----agaaggca s panTro2.chr12 228798 115 - 135371336 gagaagccactgaaaggctt----ctcgctctgactggtatttt---gagatcatcctgactgctgtggaag-----agggagggggtt----gtgtaagaggagataccgggg----------------------agaccagtt----agaaggca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 268143 115 - 136387465 gagaagccactgaaaggctt----ctcgctctgactcgtatttt---gagatcatcctgactgctgtggaag-----agggaggcggtt----gtgtaagaggagataccgggg----------------------agaccagtt----agaaggca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 239925 116 - 134511895 gagaaggcaaTGAAAGGCTT----CTCGCtctgactcgtattttgaggagatcaccctgactgctgtggaag-----acggagggggt------tgtaagaggagataccaggg----------------------agaccagtt----aggaggca i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_81449.1-45666 36633 102 + 45666 GAACAGTCACTAagtgacat----ctcactctgcctcacattttcaggagatctctttgatagccacagaga-----agg-------------------gaggagacatcaggg-----------------------ggctggtt----aggaggcc i otoGar1.scaffold_81449.1-45666 C 0 C 0 s tupBel1.scaffold_103331.1-57811 54089 118 - 57811 GATAAGCCACCAAGAGGCTTTAAACAAACACTGGACCCCATTTT-AGGAGATC-CACTGATTGCTGTGAAGA-----AGGGAGGGATT------GATCAGCAGAGACATTAGGG----------------------AGACAAGCT----GGGAGACA i tupBel1.scaffold_103331.1-57811 I 669 I 152 s equCab2.chr8 64172743 137 - 94057673 gagaacgagctccgagattt----ct-------------gtagt---aagagccttctgggtgctgtgaaaacaaccaggcataggcctgcagggctcagaggacacggcaaggacttggggttttactccaagtgaggccaagtcaccagaaggcc i equCab2.chr8 C 0 I 48 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=113632.000000 s hg19.chrUn_gl000223 103697 147 + 180455 actgtg--------------ttagtccagtggaa---gaaggcagtgt-aggccaaagtgacagcgatggggatgataaatggtggctggattctgggcatcctgtggggacagagccagaacacaacctgatagagacagcatggcacgctgagagacagaagg s otoGar1.scaffold_81449.1-45666 36735 135 + 45666 gctgcc--------------ttagtccagtggaa---gaggctgggctggggccacagccatagcgatgggggtga-aagcaatggctgggttctggacattgcgtgagtgcagagccacagtacctcct-----------caaggtgccttgagag-caggtgt i otoGar1.scaffold_81449.1-45666 C 0 C 0 s rheMac2.chr11 240041 147 - 134511895 actgtg--------------ttagtccaatggaa---gaaggcggctt-gggccaaggtgacagctatggggatgataagcagtggctggactctgggcatcctgtggggacagagccagaacacaacctcatagagacaccgtggcacgcttagagacagaagg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 268258 147 - 136387465 actgtg--------------ttcgtccagtggaa---gaaggcagcgt-aggccaaagtgacagcgatggggatgataagcagtggctggattctgggcatcctgtggggacagagccagaacacaacctgacagagacagcatggcacgctgatggacagaagg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 228913 147 - 135371336 actgtg--------------ttagtccagtggaa---gaaggcagtgt-aggccaaagtgacagcaatggggatgataaatggtggctggattctgggcatcctgtggggacagagccagaacacaacctgatagagacagcatggcacgctgagagacagaagg i panTro2.chr12 C 0 C 0 s equCab2.chr8 64172928 163 - 94057673 gctgtggagaagagggctcctggttccaggggaaaaggaaggcagctg-gggctggagcgagagcaacaggg-tagtaagcagtggctgcgttttgggcatcgcgtaaagacagagccagaaggcgtcctgacagagatgatgcggcaggtagagagagcgaagg i equCab2.chr8 I 48 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e tupBel1.scaffold_103331.1-57811 54207 152 - 57811 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=190075.000000 s hg19.chrUn_gl000223 103844 270 + 180455 ggggccagga-ggacaccaagcagcctggccaagcaaactacag--aactttccctttaaggaggtggagaagcctg-gggataacaaacgga-gaaagaagatAGTGAATAACTGGTCCATGAATGACGG-AAGATGGGGGAGATCCAACCAGAAAACAGTCCACAGAAGTGAGTCACTGAAGGAGAAAAGTGACCTTGCTAAGA-----ACACGTGAGAAGAAAGGGAAGCGGGTATCCATCCTCTC--AAA-----CAGGAGGGGCTCTAAGAAAAGGGGACTGT s panTro2.chr12 229060 270 - 135371336 ggggccagga-ggacaccaagcagcctggccaagcaaactacag--aactttccctttaaggaggtggagaagcctg-gggataacaaacgga-gaaagaagatAGTGAATAACTGGTCCATGAATGACGG-AAGATGGGGGAGATCCAACCAGAAAACAGTCCACAGAAGTGAGTCACTGAAGGAGAAAAGTGACCTTGCTAAGA-----ACACGTGAGAAGAAAGGGAAGCGGGTATCCATCCTCTC--AAA-----CAGCAGGGGCTCTAAGAAAAGGGGACTGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 268405 270 - 136387465 ggggccagga-ggacaccaaggagcctggccaagcaaactacag--aactttccctttaaggaagtggagaagcctg-gggataacaaatgga-gaaggaagatAGTGAATAACTGGTCCATGAACAACTG-AAGATGGGGGAGATCGAACCGGAGAACAGTCCACAGAAGTGAGTCACTGAAGGAGAAAAGTGACCTTGCTAAGA-----ACACGTGAGAAGAAAGGGAAGCGGGTATCCATCCTCTC--AAA-----CAGGAGGGGCTCCAAGAAAAGGAGACTGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 240188 271 - 134511895 ggggccagga-ggacaccaagcagcctggccaagcaaactacag--aacttcccctttaaagaggtggagaagcctg-gggataacaaagggaggaaagaAGATAGTGAATAACTGGTCCATGAATGACTG-AAGATGGGGGAGATCCAACCAGAAAGCAGTCCACAGAAGTGAGTCACTGAAGGAGAAAAGTGACCTTGCTAGGA-----ACACGTGGGAATAAAGGGAAGCCGGTATCCATCCTCTC--AAA-----CACGAGGGGCTCCAAGAAAAGGGGACTGT i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_81449.1-45666 36870 250 + 45666 ggagc----a-ggacgccaggccttctagtcaagcaaaccaaag--aaggtgccctttaaggaggtagggacacctc-agggacagaaatgaagggaatgaGAATGTAAATAAC-GATCTGCCAGGTACTGAAAGGTAGTAAAGATGCATCTAAAGAAGAGTTCAGAAGGCTGAGTCACTGATGCAGTA---------------------------TGGGAAGAAAAAGAAAAAAGTACCCACTCCCTC--AAATTAAGTAAGAGGAGCTCCAAGAAAAGAGGGCTAT i otoGar1.scaffold_81449.1-45666 C 0 C 0 s tupBel1.scaffold_103331.1-57811 54359 245 - 57811 GGGTCCAGGATTTGAACCATGCAGTC-AGTCATGGGGGATCCAGCCACCTTAACAACCACAAAGGTGAGGAAGTCTA-AGGATGGAAAATGGAAAAAACAAGA--GTGAATAACTAGTCTAGGAGAGGCAT-AAGATAATGAAGACTT----------CATTCCAGAAGGGT--GTCACTGAGGGAGAA--GTGCACTCATTAAG--------------GAAGAGAGGACA-----TACTCAATCCCACCAAAA-----TAGGAGAGACTCCAAGAAAAGGAGCCTAT i tupBel1.scaffold_103331.1-57811 I 152 I 1729 s equCab2.chr8 64173091 206 - 94057673 atgttgagaa-cgacagcacagatgctggccaggcaagctgagg--acgctgcccttgaacaaggtggggaagcccgagggatgagAAACAGAGGGAACGAGG-----------------------GGCCG-AAGACAGTGAAGCAGGAGCTAG-----AGTGCCCAGAAGTGAGTCATTGCAGGAGAA--GTGTCCCGACTAAGGAGAGCACCTGTGGGAAGAAAGGGAAGGAGGAGAC------------------------------------------------ i equCab2.chr8 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=35670.000000 s hg19.chrUn_gl000223 104114 57 + 180455 GCAAGTGCCCCACACACAACCTGGACATC-------TGCAACAGCCGA----CCAGGCTAAATCTGGG s panTro2.chr12 229330 57 - 135371336 GCAAGTGCCCCACACACAACCTGGCCATC-------TGCAACAGCCGA----CCAGGCTAAATCTGGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 268675 57 - 136387465 GCAAGCGCCCCACACACAACCTGGACATC-------TGCAACAGCCGA----CCAGGCTAAACCTGGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 240459 57 - 134511895 GCAAGCGCCCCACACACAACCTGGACATC-------TGCAAGAACTGA----TCAGGCTACATCTGGG i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_81449.1-45666 37120 61 + 45666 CTAAGTGTCTCATACATAACTAGGATGTC-------TACAGAGCCCAAAGATCAGGGCTAAGTCTAAG i otoGar1.scaffold_81449.1-45666 C 0 n 0 s tupBel1.scaffold_103331.1-57811 56333 61 - 57811 GCAAGTATCTCATATGTAATCAGGATGTCTACTGAGTGCACAGGCTGA-------GACTAAATGTGGG i tupBel1.scaffold_103331.1-57811 I 1729 C 0 s equCab2.chr8 64173297 34 - 94057673 ---AATGTCTC---TGCAGCCTGGCAGTC-------CACTGAGCCCA--------------------- i equCab2.chr8 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=107481.000000 s hg19.chrUn_gl000223 104171 134 + 180455 TAATTTTCAGAAGGAACTGACATGTACTTAAGAATTTAAGTAAACAAGG-ATCGAATAACTGCTTTCCTCTGAAAAATTCTGAAGGCAAAGACTGCCGCGGGACTCTCAAAAGGCAGCTGGGGAGTGAGGGTTCA s panTro2.chr12 229387 134 - 135371336 TAATTTTCAGAAGGAACTGACATGTACTTAAGAATTTAAGTAAACAAGG-ATCGAATAACTGCTTTCCTCTGAAAAATTCTGAAGGCAGAGACTGCCGCGGGACTCTTAAAAGGCAGCTGGGGAGTGAGGGTTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 268732 134 - 136387465 TAATCTTCAGAAGGAACTGACATGTGCTTAAGAATTTAAGTAAACAAGG-ATCCAATAACTGCTTTCCTCTGAAAAATTCTGAAGGCAGAGACTGCCGCGGGACTCTTAAAAGGCAGCTGGGGAGTGAGGGCTCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 240516 134 - 134511895 GACTTTTCAGAAGGAACTGACATGTGCTTAAGAATTTAAGTAAACAAGG-ATCCGATAACTGCTTTCCTGCAAAAAATTCTGAAGGCAGAGACTGCAGGGGGACTTTTAAAAGGCAGCAGGGGAGTGAGGGCTCA i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_103331.1-57811 56394 126 - 57811 CAATTTTCATGCCAAACTG-CACGTGCTTAGGGATTTAAGTCAACAAAG-AACATGT---TATCTGCCTCTGAGAAATTTGGAAGGAAG---CTGCTGGAGTACTCTGAAAAGGCAGGTGAGAAATGAAAGCCA- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s equCab2.chr8 64173331 127 - 94057673 ---CAGTCAGGAGGAACTGACCTGTGTTTAGGGATCTCAGTAAACAAGGAATCTGCTATCTGTTTCCCTCTGGGAAATCCTGAAGACGGGGACCGCTGGAGCGCTCTGCAAAGGCAGGTGAGAAGTGATG----- i equCab2.chr8 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_81449.1-45666 37181 0 + 45666 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=16696.000000 s hg19.chrUn_gl000223 104305 24 + 180455 GCA--------------------------------GCTCACCTCAAACAGGGCCCC s tupBel1.scaffold_103331.1-57811 56520 24 - 57811 GCA--------------------------------GTTCCCTTTCAGCAGGGCATT i tupBel1.scaffold_103331.1-57811 C 0 C 0 s papHam1.scaffold8782 67054 24 - 92000 GCA--------------------------------GCTCACCTCAGGAAGGGCACC i papHam1.scaffold8782 N 0 N 0 s rheMac2.chr11 240650 24 - 134511895 gca--------------------------------gctcacctcaggaagggcacc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 268866 56 - 136387465 GCAGCTCACCTCAGGCAGGGCCCCGTCCCCCTGGGGCTCACCTCAGGCAGGGCCCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 229521 24 - 135371336 GCA--------------------------------GGTCACCTCAGGCAGGGCCCC i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_81449.1-45666 37181 0 + 45666 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64173458 0 - 94057673 C e canFam2.chr26 3219524 2008 + 42029645 I a score=223985.000000 s hg19.chrUn_gl000223 104329 316 + 180455 GCCTCCCTGCGGCTCACCTCAGGCAGGGCACTGTTTCCCTGGGCCCAAGGAACACCCAGAAGATTCCCGAACTTGACACTTGAGCTCATTAGCAGGCTCCTCCTCAGCAGCACTACCTGCAGG--GAGGGAGACCCCAGGG-GAAGAGGCAGTGAGTGGACTTCTGGGTGAGTCTGCATG---CAGTGAGAGAAAGAATCACATACACCATGGAACTGCAGGGCAGAGCCCTGTCAGAGGCTCCAA--CCAAG---------CCCCACT----GATGCCTGTCATAACTCTGGGTACTGACCACCGCACAACAGGAGACTCTGTGTCTTTTTCTCTA s equCab2.chr8 64173458 238 - 94057673 ------------------------------------------------------CCCAGAAGATTCCCGGACTTGAT------GCCCCTTGACAGGCTCCTACCCAACAGCACTACCTGCAGG--GAGGGGGACCCTGGAGAGAAGAGACAATGAGTCCAATTCTGGG-GAGCCTGCAGAGGTAAGTGAGAGAGAGAGTTGCTCACATCATGGAAATAGAGAGTCGAGCTTTGTCACAGGCTCCAA--GCAA----------CCTCAAG----GG-------------GCCAGGTTCTGAGCACCAGACAACAGGAGCTTCTGT-------CCTCTA i equCab2.chr8 C 0 C 0 s tupBel1.scaffold_103331.1-57811 56544 256 - 57811 -----------GTTTCCCTAAAGCAGGAGATCGGACCCCTGAGCC-----------------------------------TGAGCCTCTTGACAGGCTTCTCCCCAACAGCACAGCCTGCAGGACAAGGGAGATCCCAAAG-GAAGAGACA---AGTGGAACTACGGGAGAGCCTGCAAG---AGGTGAGAGAAAG----ACA-GCATCATGGAGACACAGGGTAGAACCCTGTCGAAGGTTCTAAATCC------------CCCCATTCCTAGACACCTGCTATGATGTTGGGGA--GGCCAGCAGGCAATAGGAACCTTTGTCTCT--------- i tupBel1.scaffold_103331.1-57811 C 0 C 0 s panTro2.chr12 229545 316 - 135371336 GCCCCCCGGCGGCTCACCTCAGGCAGGGCACTGTTTCCCTGGGCCCAAGGAACACCCAGAAGATTCCCGAACTTGACGCTTGAGCTCATTAGCAGGCTCCTCCTCAGCAGCACTACCTGCAGG--GAGGGAGACCCCAGGG-GAAGAGGCAGTGAGTGGACTTCTGGGTGAGTCTGCACG---CAGTGAGAGAAAGAATCACATACACCATGGAACTGCAGGGCAGAGCCCTGTCAGAGGCTCCAA--CCAAG---------CCCCACT----GATGCCTGTCATAACTCTGGGTACTGACCACCGCACAACAGGAGACTCTGTGTCTTTTTCTCTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 268922 316 - 136387465 GTCCCCCTGAGGCTCACCTCAGGCAGGGCACTGTTTCCCTGGGCCCAAGGAACACCCAGAAGATTCCCGAACTTGACACTTGAGCTCACTAGCAGGCTCCTCCTCAGCAGCACTACCTGCAGG--GAGGGAGACCCCAGGG-GAAGAAGCAGTGAGTGGACTTCTGGGTGAGACTGCAAG---CAGTGAGAGAAAGAATCACATACACCATGGAACTGCAGGGCGGAGCCCTGTCAGAGGCTCCAA--CCAAG---------CCCCACT----GATGCCTGTCATAACTCTGGGTACTGACCACCGCACAACAGGAGCCTCTGTGTCTTTTCCTCTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 240674 324 - 134511895 gtctccctgcagctcacctcaggcagggcactgtttccctgGGCCCAAAGAACACCCAGAAGATTCCTGAACTTGACACTTGAGCTCATTAGCAGGCCCCTCCTCGGCAGCACTACTTGCA-G--GAGGGAGACCCCAGGG-GAAGAGGCAGTGAGTGGACCTCTGGGTGAGTCTGCAAG---CAGTGAGAGAAAGAATCACATACATCACGGAACTGCTGGGTAGAGCCCTGTCAGAGGCTCTAA--CCAAGCCCCACAAACCCCACA----GATGCCCGTCATAACACTGGGTACTGACCACCACACAACACGGGCCTTTGTATCTTCTCCTCTA i rheMac2.chr11 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_81449.1-45666 37181 0 + 45666 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=153612.000000 s hg19.chrUn_gl000223 104645 194 + 180455 ACCAC--TGATTTTCCCACCCCAACCCAGAAGGAGCCCCCGTCGGAGGGCAACAAGTAAATGAAGTGGGA--ATACAGACAAGCCTCCTCCATCTCCCCTCTGCAGGCTAGAATGAGGGGAGGTACAAGAGCTTGGAGTGAGAGTGTGGACTGAACTTTCCCATACCTGAAAGTAACTGAGAGTCAATAACAAACAAG s rheMac2.chr11 240998 194 - 134511895 ACCAC--CGATCTTCCCATCCCAACCCAGAAGGAGCCCCCACCGGACGGCAACAAGTAAATGGGGTGGGA--ATACAGACAAGCCTCCTCCATCTCCCCTGTGCAGGCTAGAATGACAGGATGTACAAGAGCTTGGAGTGAGAGTGTGGCCTGAACTTTCCCATACATGAAAGTAACTGAGAGTTAATAACAAACAAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 269238 194 - 136387465 ACCAC--TGATTTTCCCATCCCAACCCAGAAGGAGCACCCATCGGAGGGCAACAAGTAAATGAAGTGGGA--ATACAGACAAGCCTCCTCCATCTCCCCTCTGCAGGCCAAAATGAGGGGAGGTACAAGAGCTTGGAGTGAGAGTGTGGACTGAACTTTCCCATACCTGAAAGTAACTGAGAGTCAGTAACAAACAAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 229861 194 - 135371336 ACCAT--TGATTTTCCCACCCCAACCCAGAAGGAGCCCCCATCGGAAGGCAACAAGTAAATGAAGTGGGA--ATACAGACAAGCCTCCTCCATCTCCCCTCTGCAGGCTAGAATGAGGGGAGGTACAAGAGCCTGGAGTGAGAGTGTGGACTGAACTTTCCCATACCTGAAAGTAACTGAGAGTCAATAACAAACAAG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 56800 185 - 57811 ATCAT--TGATCTTCCTATCCCAACCCGAAAGGAGC-CCCACAGAAAG---ACAGGCAAATCAAGTGGGACTAGAGAGACAAGCCTTCCCCATCT-TCCTCTGCAGGCCAGGATCTAGGGAAGAGT--GGGTCAGAATTAAGAATGTGGACTAGACTTTCCAAAACTTGAAAGTCGCTCAGAGTTATTAAGAAA---- i tupBel1.scaffold_103331.1-57811 C 0 I 277 s equCab2.chr8 64173696 184 - 94057673 ACCACAGTGGTCTTCCCATCAGCACCCAGGAGGAAC-CCCCCAGGAGGGCAACAAGAAAAGGAAGTGGGAATAAAGAGACAAGCCTCCCCC--CTCACCCCTGCAGCTGAGTAGGGAAAGAAGT----GGGACTGGAATTAGAGTGTGGATTGGACTTTCCACTGCCTGAAAGTAACGACAGCCCAATCAG------- i equCab2.chr8 C 0 C 0 s xenTro2.scaffold_15095 4698 180 + 5064 ACCCC--TG--TTCCCCGGTCTCACTCAT--------CCTGTCACGAACCTATAGACACACGAGATAGTA--ACATAGCCCCGCCCCTCGGCCCCTCCCACTGCAGGGTGATATGGGGGGGGGGA---GATATAGGGGCACCAGCGTTAGCTAGGCATACTCACCAGGGAGAGAAGGTGGGGGCCCCAGAGGAACTC- i xenTro2.scaffold_15095 N 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_81449.1-45666 37181 0 + 45666 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=35814.000000 s hg19.chrUn_gl000223 104839 42 + 180455 GCTGTGACCAGAGCATCATCAG----------CTCTCCTCACGACGAGCACT s rheMac2.chr11 241192 42 - 134511895 ACTGTGATCAGAGCATCATCAG----------CTCTCCTCACAACGACCACT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 269432 42 - 136387465 GCTGTGAACTGAGCATCATCAG----------CTCTCCTCATGATGACCACT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 230055 42 - 135371336 GCTGTGACCAGAGCATCATCAG----------CTCTCCTCACGACGAGCACT i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_103331.1-57811 57262 42 - 57811 ATTGTGAACAGAACATCATGGG----------CTCTCCTCAACATGACCACC i tupBel1.scaffold_103331.1-57811 I 277 C 0 s equCab2.chr8 64173880 42 - 94057673 ATAGTGACCTGAACATCACGGG----------CTCTCGCTGAGAGGACCACC i equCab2.chr8 C 0 I 6 s xenTro2.scaffold_15095 4878 48 + 5064 TTGATGAGCCAATCACTATCAGGCAAATGGGCCACTCC----AACAAGCCCT i xenTro2.scaffold_15095 C 0 N 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e otoGar1.scaffold_81449.1-45666 37181 0 + 45666 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=276861.000000 s hg19.chrUn_gl000223 104881 345 + 180455 AGGG----AAGG--------GCTGAC--AGGAAGCCTGAGGCTGTGATG-AGAAAAATGAAGCCACTA-----CTGTGCCCTTATTACGTTGAGG-TGCTTATCAAGCTGGTTACTTTAAATCTGAGGGAGAAGAAACATGAAACAAGTCACTTCGATGTGACCATATTAGAAGCTGGAGGTCGACAGCAGAAGACGAAACGGAGCCCAAAGTGGCTGCTTCTGGGGACACAGGATGGAAGAGGGAAGGTGCACAGCAGA----TAGCAGGTAGACCAGGAGCAGCGGGTAGACCAGGAGGCTTATTGTCTATTTTATTTAAAGCCTT-TTACTATTTCTTTAAGCTTGA---TACGAATGAAA-ACAggccagg s panTro2.chr12 230097 349 - 135371336 AGGG----AAGG--------GCTGAC--AGGAAGCCTGAGGCTGTGATG-AGAAAAATGAAGCCACTA-----CTGTGCCCTTATAACGTTGAGG-TGCTTATCAAGCTGGTTACTTTAAATCTGAGGGAGAAGAAACATGAAACAAGTCACTTCGATGTGACCATATTAGAAGCTGGAGGTCGACAGCAGAAGACGAAACGGAGCCCAAAGTGGCTGCTTCTGGGGACACAGGATGGAAGAGGGAAGGTGCACAGCAGACGAGCAGCGGGTAGACCAGGAGCAGCGGGTAGACCAGGAGGCTTATTGTCTATTTTATTTAAAGCCTT-CTACTATTTCTTTAAGCTTGA---TACGAATGAAA-ACAggccagg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 269474 352 - 136387465 AGGGAAGAAAGG--------GCTGACAGAGGAAGCCTGAGGCTGTGATG-AGAGAAATGAAGCCACTA-----CTGTGCCCTTATTATGTTCAGGCCGCTTGTCAAGCTGGTTACTTTAAATCTGAGGGAGAAGAAACATGAAACAAGTCACTTCGATGTGACCATATTAGAAGCTGAAGGTCGATAGCAGAAGACGAAACGGAGCCCAAAGCGGCTGCTTCTGGGGACACAGGATGGAAGAGGGAAGGTGCAGAGCAGA----CAGCGGGTAGACCAGGAGCAGCGGGTAGACCGGGAGGCTTGTTGTCTATTTTATTTAAAGCCTT-TTACTATTTCTTTAAGCTTGA---TACGAATAAAA-ACAggccggg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 241234 350 - 134511895 AGGGAAGAAAGG--------GCTGACAGAGCAAGCCTGAGACTGTGATG-AGTAACATGAAGACACTA-----CTGTGCCCTTATTATGTTAGGC-CACTCGTCAAGCTGGTTACTTTAAATCTGAGGGAGAAGAAACATGAAACACATCACGTCGATGTGACCATATTAGAAGCTG-AGGTCTACACCAGAAGAGGAAATGGAGCCCAAAGCAGCTGCTTCTGGGGACACAGGATGGAAGAGGAAAGGTGCAGAGCAAA----GAGTGGGTAGACCAGGAGCAGCAAGTAGACAAGGAGGCTTGTTATCTATTTTATTTAAAGCCTT-TTACTATTTCTTTAAGCTTGA---TATGAATAAAA-ATAggctgag i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_78004.1-39946 39159 303 - 39946 AGGG----AGGA--------CTTGCC--AGCATGTCTGAGTCTGT-ATG-GTAAAAGAGAAACCACTC----TCTGTACATTTACCAAGTCAAGGCCACTTATGGTAGT-GCAACTTTAAAACAGAGGGAGGAGAAACTTGAAACAAGGCATATCAACAGGACAGTATTAGAACTTTGAGGTAGACACCAGAAAAGTGAATGGAG-CCAAGGAGGCTGCTTCCAGGAATATAGGGTGAAGAAAGAAAAGTGCAGAGCACA----GTGAGGGT-------------------GAAGAAAAAGCTTGTGgtc----ttagttcatgtcttgccac--------------------taccaacaagc-acctgt--gg i otoGar1.scaffold_78004.1-39946 I 24518 C 0 s tupBel1.scaffold_103331.1-57811 57304 324 - 57811 AGGG----AAAGGAGAGTTAGCTGACAGGGCGAGTCTCAAGTTGGGATGAAGAAAGATAAACTCACTA----------TCATTATCAAGTTTAGATCATTCATCAAGCTGGCAACTTTAAAA-TGAGGAAGAAGGTACATGAAACAAGGCTTACCAATGTGAACATATCAAAACCTT----TAGATACCAGAAGAGTAATCA-----CAAAGTGCCTGCTTCTGGG--TACAGAATGAAAGAGGAAAGGTACCCAGGAGA----GA-------------------TGAGTAAACCAGAAGGCTTGTTCTCTATTCCATTTGAGGTTTT--TACTATTTCTTTAAGCATAAGAGTAAAAATGAAATACAAACTAGG i tupBel1.scaffold_103331.1-57811 C 0 N 0 s equCab2.chr8 64173928 325 - 94057673 AGGG----GAGGGAG-----AATGACAGGACGCGTCTGAGGCTGTGACGGAGAAAAATGAAGCTGTGACTCGTCTGTATCCTAATCAAGTCCGGGCCTTTCATCAAGCTGGCTACCTCACAATGGAGGGAGGCGAAACACAAAGCACGGTGAACCAACACGACTATA----AAAGTG-CGGCACATGCCACAAGAGTGAATGCAGACCAAGGCGCCTGATTCTGGGG--ACAGCATGGAAGAGGACAGGTACAGAGCGGG----GTGGGGGGGGG-----------GGGTAAACCGGGAGGCTTATT-------TTATTTTAAGCCTT-TTACTGATTTTTTAAGTTTGA---TAAGaataaaa-ata------- i equCab2.chr8 I 6 I 5168 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e canFam2.chr26 3219524 2008 + 42029645 I a score=59711.000000 s hg19.chrUn_gl000223 105226 128 + 180455 catggtagttcacgcctgtaatcccagcactttgggaggcagaggtgggtggatcacctgcaa-tcaggagttcaaga--ccagcctggccaacatagtgaaaccctatcctactaaaaatacaaaaatta s panTro2.chr12 230446 128 - 135371336 catggtagttcacgcctgtaatcccagcactttgggaggcagaggtgggtggatcacctgcaa-tcaggagttcaaga--ccagcctggccaacatagtgaaaccctatcctactaaaaatacaaaaatta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 269826 128 - 136387465 catggtggctcatgcctgtaatcccagcacttcgggaggcagaggtgggtggatcacctgcag-tcaggagttcaaga--ccaacctggccaacatagtgaaaccctgtcctactaaaaatacaaaaatta i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 241584 128 - 134511895 catggtggttcctgcctgtaatcccagcactctgggaggcagaggtgggtagatcacctatgg-tcaggagttcaaga--ccagcctggccaacatggcgaaaccccgtcctgctaaaaatacaaaaatta i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_78004.1-39946 39462 74 - 39946 cagggtaatttata-------------------aagaaaaaggtttgggctcagcttctacagctcaggcagctaaggctccagcC-------------------------------ACATACA------- i otoGar1.scaffold_78004.1-39946 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=32219.000000 s hg19.chrUn_gl000223 105354 132 + 180455 ggccgggcacagtggctcacacctgtaatcctagcactttgggaggccaaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacagaaaatacaaaaaa s panTro2.chr12 230574 132 - 135371336 ggccgggcacagtggctcacacctgtaatcctagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacagaaaatacaaaaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 269954 132 - 136387465 ggccgggcacagtagctcatacccgtaatcctagcactttgggacgccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaa i ponAbe2.chr12 C 0 C 0 s otoGar1.scaffold_78004.1-39946 39536 64 - 39946 ----------------------------------------------CCAGAGTTGGTgggt---------------tcgaatccagtctgg--ggcctgccaaaacaatg-----acaactacaaccaaaaa i otoGar1.scaffold_78004.1-39946 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 241712 0 - 134511895 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=28125.000000 s hg19.chrUn_gl000223 105486 176 + 180455 ttagctgggtgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccctggaggcggagcttgcag-----tgagccaagatcgtgccactgcactccagcctgggtgacagagcgagattccatctcaaaaa----aaaaaaaaaaaaaaaaaaatta s ponAbe2.chr12 270086 180 - 136387465 ttagctgggtgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaactctggaggcggagcttgcag-----tgagccaagatcgtgccactgcactccagcctgggcaacagagcgagattccatctcaaaaaaaacaaaacaaaacaaaacaaaatta i ponAbe2.chr12 C 0 C 0 s otoGar1.scaffold_78004.1-39946 39600 171 - 39946 atagccaggcgttgtggcaggtgcctatagtcccagctacttgggaggctgaggcaaaagaatcacttaagcccaagagttagagggtgctgtgctatgagctgtga---tgcctcatcactttacccagggcaacagcttaaggctctgtctcaaaaa----aaaggaaaagaaaaa------- i otoGar1.scaffold_78004.1-39946 C 0 N 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 230706 0 - 135371336 C e rheMac2.chr11 241712 0 - 134511895 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=39352.000000 s hg19.chrUn_gl000223 105662 172 + 180455 gccaggtatggcggcgcatgcctgtagtccccactactcgggaggctgaggcaggagaatcgcttgaacccaggaggtgaaggctgcagtgag-cgagaacgtgccactacactccagcctgggcaacagagcaagactctaactcaaaataaataaataaataaataaaaga s rheMac2.chr11 241712 169 - 134511895 gccaggtatggcggcgcacgcctgtaatccctgctactcgggaggctgaggcaggagaatcacccgaacccaggaggtggcggctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactccatctca----aaatggataaataaataagaga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 270266 168 - 136387465 gccaggtatggcagcacacgcctgtagtcccctctacttgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggctgcagtgag-caagattgtgccactacactccagcctgggcgacagagaaagactctaactca----aaataaataaataaataaaaga i ponAbe2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 230706 0 - 135371336 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996473 198 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=81530.000000 s hg19.chrUn_gl000223 105834 272 + 180455 ataaaAGTAAAATACAAAATAACTGTTAAAA--TTTTGAATTGACCTAGCATGATCAA-----------AAGAAAATT--------------------------TAAAAAGAAAATT-TTATGACCAAGAAGCAGTCCA-AAACTCTTAAGA---------GATTTAAAATTTCACAAGAGATTATGATAAA----cagttctactgtaatgggacatatatgctgcaaaaaatcacaccatgcaaagttgcataaaaagccataggatttatgagaaaaatgaggtaaaggcataatactggtg-----acacacaaaaagagaacctag s ponAbe2.chr12 270434 271 - 136387465 ataaaaataaaatacaaaaTAACTGTTAAAA--TTTTGAATTGACCTAGCATGATCAA-----------AAGAAAATT--------------------------TAAAAAGAAAATT-TTATGACCAAGAAGCAGTCCA-AAACTG-TAAGA---------GATTTAAAATTTCACAAGAGATTATGATAAA----cagttctactgtaatgggacatatatgctgcaaaaaatcacaccatgcaaagctgcataaaaagccataggatttatgggaaaaatggggtaaaggcataatactggta-----acacacaaaaagagaacctag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 241881 270 - 134511895 ataaaaataaaaTACAAAATAATGGTAAAAA--TTTTGAATTGACCTAGCATGATCaa-----------aagaaaatt--------------------------ttaaaagaaaatt-ttaTGACCAAGAAGCAGTCCACAAACTC-TAAGA---------GACTTAAAATTTCACAAGAGATTATGATAAA----CAGTTCTACTGTAATGGGATGCACACGCTGCAAAACATCACACCATTC--AGTTGCATAAAAAGCCATAGGGCTTATGGGAAAAATGGGGTAAAGGCATAATACCGGTG-----ACACACAAAAAGAGAACCTAG i rheMac2.chr11 C 0 I 1854 s bosTau4.chr17 29996671 319 - 76506943 ATAAAAATAAAATACAAAAGAACTACTAAAATTTTTTTAATGGGACAAGCATAATCAAGAAATAAGGATAAGAAAATTATTATGACCGCATAATCAAGAAATAAGGATAAGAAAATTATTATGACCAAGACTATGTGCATAAAATC-TAGGATATAGAAGCGATTTTAAAGTTTGCAAGCAATCACTATACAAaggcagttctgctataatgtggtatgtat-ttacaaaaaaaaaaaaaat----caccactatgaaagtctcagg-cttatgggaagaacagggctggggtgtaacacctttatcaccacacatgaaaaaaaga----- i bosTau4.chr17 I 198 I 16289 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 230706 0 - 135371336 C e cavPor3.scaffold_248 283065 6376 + 667635 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=30198.000000 s hg19.chrUn_gl000223 106106 360 + 180455 gaggccaggtgcagtggctcacacctgtaatcccagcactttcagaggctgaggtgggcagatcatttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccctgtctctactaaatacaaaaaaattaaccgggcatggtgacgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagctgagatcacaaaattgcactccagcctgggcaacaagggcgagactccccctcaaaaaaaaaTTTTTTTTTCAACACTTTCAAAACTTAGAAGTTAAAGCAAAGTACAAGGAATTTCCTTGACACAATAAAGTGTTTCTTCCTTAAACCTAT s ponAbe2.chr12 270705 356 - 136387465 gaggttaggcacagtggctcacacctgtaatcccagcactttcagaggctgaggtgggcagatcatttgaggtcaggagtttgagaccagcctgaccaacatggtgaaacc--gtctctactaaatacaaaaaaattaaccgggcacggtgacaggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagctgagatcacgcaagtgcactccagcctgggcaacaagggcgagactccccctcaaaaaaaaa--aaaaTTTCAACACTTTCAAAACTCAGAATTTAAAGCAAAGTACAAGGAATTTCCTTGACACAATAAAGTGTTTCTTCCCTAAATCTAT i ponAbe2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 230706 0 - 135371336 C e rheMac2.chr11 242151 1854 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=188132.000000 s hg19.chrUn_gl000223 106466 739 + 180455 AGAAAATATTATACTTTGTGTAAACCACTAAAATCATTTTCTTTAAAAACACATGGCggctgggtgcggtggctcacgcctgtaatcccagcactctgggaggctgaggcaggcaaataatgaggtcaagagatcgagaccatcctgactaacacagtgaaaccccacctctactaaaaacac-aaaaaaatcagccaggtgtggtggtgggcgcctgta-tcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttggcagtgagctgagatcgtgccactgcactcaagcctgggcaacaaagagcaaaactccatctcaaacaaacaaacaaacaaaaaaacTAAGAGAATCGGCTGAGATAAAATGAGAACTGgtggagatccaccatcttgtcttgcagctgcctgagacacagacatggcttctgttCCactgactctggaactgtgtaaacagctgttggattcgacagtccctgataaacagctctcacctgactgacaaagagctgcttgatttgtggatggcagttccaaggtgaacaaatgacatcctgtttggaagactgctgctctgattaaagaagagtcaagaatctttctgagttatttatagcttagggcaattgggtaaagtatg-ttttgtgagcaaaatttacctttctctctacctgatttctccaaaatttggaaactattcatgagtattctgattt s ponAbe2.chr12 271061 741 - 136387465 AGAAAATAACATACTTTATGTAAACCACTAAAATCATTTTCTTTAAAAACACATGACggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcaaataatgaagtcaagagatcgagatcatcctgactaacatggtgaaaccccatctctactaaaaacacaaaaaaaatcagccaggtgtggtggtgggcacctata-tcccagctactcaggaggcagaggcaggacaatcacttgaacccgggaggcggaggttggcagtgagctaagatcgtgccactgcactccagcctgggcaacaaagagcaaaactccatctcaagcaaacaaacaaacaaaaaaaCTAAGAGAATCAGCTGAGATAAAATGAGAACTGgtggagatccaccatcttgtcttgcagctgcctgagacacagacatggcttctgttCCactgactctggaactgtgtaaacagctgttggattcgacagtccctgataaacagctctcacctgactgacaaagagctgcttgatttgtggatggcagttccaaggtgaacaaatgacatcctgtttggaagactgctgctctgattaaagaagagtcaagaatctttctgagttatttatagcttagagcaactgggtaaagtatgtttttgtgagcaaaatttacctttctctctacctgatttctccaaaatttggaaactattcaagagtattctgattt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 244005 739 - 134511895 agaaaaTATCATACTTTATATGAACCATTAAAATCATTTCCTTTAAAAACACATGACggctgggggcagtggctcacgcctgtaatcctagcactttgggaggccgaggcgggcaaatcacaaggtcaagagatcgagacaatcctgactaacacggtgaaactccatttctagtaaaaatac-aaaaaaatcagccaggtgtggtggc-ggcgcctatagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggtggatctt-gcagtgagccgagatcacgtcactgcactccagcctgggcaacaaagagtaaaactccatctcaaacaaacaaacaaacaaaaaaacTAAGAGAATCAGCTGAGATAAAATGAGAACTGgtggagatccaccatcttgttttgcagctgcctgagacacagatacggcttctgttCCactgactctggaactatgtaaacagctgttggattctacagtccctgataaacagctctcacccgactggcaaagagctgcttgacttgtggatggcagttccaaggtgaacacatgacatcctgtttggaaggctgctgctctgattaaagaagagtcaagaatctttctgagttatttacagcttagagcaattgggtaaagtatgtttttgtgagcaaaatttacctttctctctacctgatttctccaaaatctggaaactattcatgagtattctgatct i rheMac2.chr11 I 1854 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 230706 0 - 135371336 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=485969.000000 s hg19.chrUn_gl000223 107205 958 + 180455 tatggcaatagagttatttgcataagttcagcaagaatctgttttcttttgtaaaaaggacacaattg-agagactggttattttatcaaggcctcaaatggaatggcatattttcagatataaccaggctgctttgagaaatttaggttggatttatagagctgataaaaagccccttggaaagactcgcctggtaccttgtccaccttaaagattcctgatctgtggcaagtaaagaatgtcactttttaacaggctcaggaacctcatggtattttgggatctcgagaagacaggaattcatacaggtgttacaagcacagtcgagcagcaaatccttggcttggcttctggccttctaagcttttaaaaagtcgaatccaaaattcctttaaaaagttccagcaaggccgagagcagtggcttatgcctgtaatcccagcactttgggaggctgaggagggcagatcatgaggtcagaagtttgagaccagcctgaccaacatggtgaaaccctatgtctactaaaaatacaaaaattagccaggcgtgctggaacacacctgtaatcccagctactcaggaggctgaggcaggataatcgcttgaacccgggaggcgaaggttgcagtgagccaagatcacaccactgcactccagcctgggcgacagagcaagactccgtctcaaaaagaaaaaag----aaaaaaaaaaaaaagctccagcaaagtcaacttaaaagaagcctacatggctggtcactattcttgctattctttatgcaaataaccaggccaagtataatgagatcaaaatttatttgcaaataagttggtcctgctacgatttattcttggtagaagtagggacaccagagagagaaaattttagattctgattgctgttctgagtttttattatttgcctataatttgggctaact--gaattatttcctggctac s panTro2.chr12 230706 961 - 135371336 tatggcaatagagttatttgcataagttcagcaagaatctgttttcttttgtaaaaaggacacaattggagagactggttattttatcaaggcctcaaatggaatggcatattttcagatataaccaggctgctttgagaaatttaggttggatttatagagctgataaaaagccccttggaaagactcgcctggtaccttgtccaccttaaagattcctgatctgtggcaagtaaagaatgtcactttctaacaggctcaggaacctcatggtattttgggatctcgagaagacaggaattcatacaggtgttacaagcacagtcgagcagcaaatccttggcttggcttctggccttctaagcttttaaaaagtcgaatccaaaattcctttaaaaagttccagcaaggccgagagcggtggcttacgcctgtaatcccagcactttgggaggctgaggagggcagatcatgaggtcagaagtttgagaccagcctgaccaacatggtgaaaccctatgtctactaaaaatacaaaaattagccaggcgtgctggaacacacctgtaatcccagctactcaggaggctgaggcaggataatcgcttgaacccgggaggcgaaggttgcagtgagccaagatcacaccaccgcactccagcctgggtgacagagcaagactccgtctcaaaaagaaaaaag----aaacaaaaaaaaaagctccagcaaagtcaacttaaaagaagcctacatggctggtcactattcttgctattctttatgcaaataaccaggccaagtataatgagatcaaaatttatttgcaaataagttggtcctgctacgatttattcttggtagaagtagggacaccagagagagaaaattttagattctgatcgctgttctgagtttttattatttgcctataatttgggctaactctgaattatttcctggctac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 271802 964 - 136387465 tatggcaacagagttatttgcataagttcagcaagaatctgttttcttttgtaaaaacgacacaattggagagactggttattttatcaagacctcaaatggaatggcatattttcagatataaccaggctgctttgagaaatttaggttggatttatagagctgataaaaagccccttggaaagactggcctggtaccttgtccaccttaaagattcctgatctgtggcaagtaaagaatgtcaccttcttacaggctcaggaacctcatagtattttgggatctcgagaagacaggaattcatacaggtgttacaagcacagtcaagcagcaaatccttggcttggcttctggccttctaagcttttaaaaagtcgaatccaaaattcctttaaaaagttccagcaaggccgagagtggtggcttatgcctgtaatcccagcactttgggaggctgaagcgggcagatcatgaggtcaggagtttgagaccagcctgaccaacatggtgaaatcctatgtctactaaaaatacaaaaattagccaggcctgctggcacacacctgtaatcccagctactcaggaggttgaggcaggataatcgcttgaacccgggaggtgaaggttgcagtgagccaagatcacaccactgcactccaccctgggtgacagagcaagactccatctcaaaaagaaaaaagaaaaaaaaaaaaaaaaaagctccagcaaagtcaacttaaaagaagcctacatgactggtcactattcttgctattctttgtgcaaataaccaggccaagtataatgagatcaaaa-ttatttgcaaataaattggtcctgctatgatttattcttggtagaagtagggaaaccggagagagaaaattttagattctgatcgctgttctgagtttttattatttgcctataatttgggctaactctgaattatttcctagctaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 244744 946 - 134511895 tatggtaatatggttatttatataagttcagcaagaatctgttttcttttgc-aaaaggacacaattggaaagactggttattgtatcaaggcctcaaatggaatggcgtattttcagatataaccaggctgctttgagaaatttaggttggatttacagagctgataaaaagccccttggaaagactggcctggtaccttgtccaccttaaagattcctgacctgtggcaagtaaagaatgtcactttctaacaggctcaggaacctcatggtattttgggatctcgagaagacaggaattcatacaggtgttacaagcacagtcgagcggcaaatccttgggttggcttctggccttctaagcttttaaaaagtcgaatcaaaaattccttataaaagttccagcaaggccgggagtggtggctcacgcttgtaatcccagtactttgggagaccaaggcaggcagatcatgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctctgtctactaaaaatacaaaaattagctggacgtgctggcaggcacctgtaattccagatactcaggaggctgaggcaggagaactgcttgaacccgggaggcgaagactgaagtgagccgagatcacaccactgccctctagtctgggtgagagtaca----cccatctcaaaaaaa----------aaaaaaaaaaaaaagctccagtaaagtcaacttaaaagaagcctacatggctggtcactattcttgccattc-ttatgcaaataaccaggccaagt---atgagaccaaaatttatttgcaaataaattggtcctgctatgatttattcttggtagaagtaggaaaactagagacagaaaattttagattctgattgctgttctgagtttttgttatttgcctataatttgggctaattctgaattatttcctggctac i rheMac2.chr11 C 0 I 322 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=202402.000000 s hg19.chrUn_gl000223 108163 400 + 180455 aagaagtccctaaaaaggaaccaggttttcgttttcttcatgatacttttagtcggcccattaacggaacaggttatttgctggtgttgttctggcacaatcaaaagttctctttcgtttgtaatccttgtgtgcattctatttctattattcaaattattgttatgtatctctcattgttttacttcatctgagacaagcaaagtcatagtattctgaagactagaaatgattcaacaaccctgtgaacctccttaatttggaaccctccttggcctaatctgttttccac-----tgcactgctgctaaagctctgcaatatcaggcaccctacctAACGTTCAGGGGAGGGCGCATAAGATAGAAAAGCTGGACTGGGAGGTGAAGtgtgaaggccaaagca s panTro2.chr12 231667 400 - 135371336 aagaagtccctaaaaaggaaccaggttttcgttttcttcatgatacttttagtcggcccattaacggaacaggttatttgctgctgttgttctggcacaatcaaaagttctctttcgtttgtaatccttgtgtgcattctatttctattattcaaattattgttatgtatctcttattgttttacttcatctgagacaagcaaagtcatagtattctgaagactagaaatgattcaacaaccctgtgaacctccttaatttggaaccctccttggcctaatctgttttccac-----tgcactgctgctaaagctctgcaatatcaggcaccctacctaacgttcagaggagggcgcataagatAGAAAAGCTGGACTGGGAGGTGAAGtgtgaaggccaaagca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 272766 400 - 136387465 aagaagtccctaaaaaggaaccaggttttcgttttcttcatgatacttttagtcggcccattaacggaacaggttatttgctgctgttgttccggcacaatcaaaagttctctttcgtttgtaatccttgcatgcattctatttctattattcaaattattgttatgtatctctcattgttttacttcatctgagacaaccaaagtcatagtattctggagactagaaatgattcaacaaccctgtgaatctccttaatttggaaccctccttggcctaatctgttttccac-----tgcactgctgctaaagctatgcagtatcaagcaccctacctAATGTTCAGAGGAGGGCGCATAAGATAGAAAAGCTGGACTGGGAGGTGAAGtgtgaaggccaaagca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 246012 400 - 134511895 aagaagtcccgaaaaaggaatgaggttttcgttttcttcatgatacttttagttggcccattaacggaataggttacttgctgctgttgttccggcacaatcaaaagttctctttcgtttgtaatccttgcgggcattatatttctactattcaaatta---ttatgtatctctcattgttttacttcatctgagaaaaccaaagtcatagtatcctgaagaccagaaatgattcaacaacgctgtgaatctccttaatttggaatcctcctgggcctgatgtgttttccactgcaatgcactgctgctaaagctatgccatatcaagcaccctccctaaggttcagagGAGGGTGCCTAAGATAGAAAAGCTGGGTTGGGAGGTGAAGtgtgaaggccaaag-- i rheMac2.chr11 I 322 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=6501.000000 s hg19.chrUn_gl000223 108563 55 + 180455 actccatcttggaagctcatcgaccatgtgggcttctgattaacccctgttctgg s ponAbe2.chr12 273166 31 - 136387465 actccattttggaagctcatcgaccatgtgg------------------------ i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 246412 52 - 134511895 ---ccagcttggaagctcatccaccacgtgggcttctgatgaactcctgttctgg i rheMac2.chr11 C 0 I 857 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 232067 0 - 135371336 C e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 108618 165 + 180455 actctatcttggaagctcatcgaccatgtgggcttctgattaacccctgttcTGGactccatcttggaagctaatctaccatgtgggtttctgattaacccctgttctggactccatcttggaagctcatcgaccatgtgggcttctgattaacccctgttctgg e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 232067 0 - 135371336 C e ponAbe2.chr12 273197 0 - 136387465 C e rheMac2.chr11 246464 857 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=2275.000000 s hg19.chrUn_gl000223 108783 31 + 180455 actccatcttggaaactaatctaccatgtga s panTro2.chr12 232067 31 - 135371336 actccatcttggaagctcatcgaccatgtgg i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 273197 0 - 136387465 C e rheMac2.chr11 246464 857 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=168202.000000 s hg19.chrUn_gl000223 108814 637 + 180455 gcttctgattaacccctgttctggactccatcttggaagttcatctaccgtgtgggcttctgattagcccctgttctgggaaggcctctaagatttccagttcatctattgttccttgtgtcagaccaggtacttaccataaatcctacccttaggtcaaacaaccttgatgtaactgtacttcaactgtcttacacatcccttctgaaccacccctccctacggtctagaagcactgggtctgggggtaatggtgcagggatccaccaccttgtcttgccactgcatgagacacagacatggcttctgttcttaagtccctattaaatgtttctttctaagaaaacaaaac-------aaaacaaaacaaaacaaaaAACCATGAGAACCAGTAAGAAAAGTCAACAGGGTAGCAGTTTTAAACAAAACAATAAGGAATAGCTTTTTGGCacattagcagtcaccaaccagaaaatatagtaagaaaatgcctatatgatcacagtaacaaatctagaaagtacttaggaataaaaagctttaaaacgcaggaaaacctaacaaaaaatacacatgataaaatatgtaagtaca-aagagattgaagcaacatgccatgtttatgatgagtagacttacatggc s ponAbe2.chr12 273197 645 - 136387465 gcttctgattaacccttgctctggactccatcttggaagctcatctaccgtgtgggcttctgattagcccctgttctgggaaggcctctaagatttccagttcatctattgttccttgtgtcagaccaggtacttaccataaatcctacccttaggtcaaacaaccttgatgtaaccatacttcaactgtcctacacatcccctctgaaccacccctccctatggtctagaagccctgggtctgggggtaatggtgcagggatccaccatcttgtcttgccactgcgtgagacacagacatggcttctgttcgtaagtccctattaaatgtttctttctaaggaaAaaaaacaaaaacaaaaacaaaacaaaacaaaaaaccatgagaaccagtaagaaaagtcaacagggtagcagttttaaacaaatcaataaggaataggtttttggtacattagcagtcaccaaccagaaaatatagtaacaaaatgcctatatgatcatagtaacaaatctagaaagtacttaggaataaaaagctttaaaacgcaggaaaacctaacaaaaaatacacatgataaaatatgtaagtacagaagagattgaagcaatatgccatgtttatgatgagtagacttacatggc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 232098 632 - 135371336 gcttctgattaacccctgttctggactccatcttggaagttcatctaccgtgtgggcttctgattagcccctgttctgggaaggcctctaagatttccagttcatctattgttccttgtgtcagaccaggtacttaccataaatcctacccttaggtcaaacaaccttgatgtaaccgtacttcaactgtcttacacatcccttctgaaccacccctccctaaggtctagaagcactgggtctgggggtaatggtgcagggatccaccaccttgtcttgccactgcatgagacacagacatggcttccgttcttaagtccctattaaatgtttctttctaagaaaacaaaac-------aaaacaaaacaaaa-----AACCATGAGAACCAGTAAGAAAAGTCAACAGGGTAGCAGTTTTAAACAAAACAATAAGGACTAGCTTTTTGGCACATTAGCAGTCACCAACCAGAAAATATGGTAAGAAAATGCCTATATGATCACAGTAACAAATCTAGAAAGTACTTAGGAATAAAAAGCTTTAAAATGCaggaaaacctaacaaaaaatacccatgataaaatatgtaagtaca-aagagatggaagcaacatgccatgtttatgatgagtagacttacatggc i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 246464 857 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=483177.000000 s hg19.chrUn_gl000223 109451 981 + 180455 aaagatattaattttccacaaattaatttgcacatttgataaattctcaatgaaaataccaagaaagtttttCATTTTATTTCACCTAATAATTCTAACTCTCAATAATGTAAAATAAAATCATATGCTTGGActactactgctacaactagaaaattctaaatactcttatcttttttaaaacaccagagacctgtggaaggaaggaggactaaacaaactaaaattgc-gagagaaaagagctcctcttgggtgagcta---------aaattgctggctgttacctcgctgggccatttgctcagcttgagaacagtgaaggaagggctcggcccagacagaggactattctaggggaaagagaaaccagtgaaggttttgatgtgccccagtggacagtgagttttccccatgggacatctgttgagtgctggtcagtgcaagaagctgcaggctgggctggaatggcagactgagtctcccgcagcctcaaggtgctccagaaacaaagtaccagtagagaggagcctgcaataaatataccatccagaaacccgaagacacaggtaacagagtacagcccctaaacagctcaattcctgttttgattgaggtgatcagccattcccctactgcatgacagagaaaaggggaaatatcctctgatataaaacaacagtaaggtcaggtatggtggctcacccctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggccaggagttt---gagaccagcctgaccaacatggtgaaatcccgtctctactaaatatacaaaaattatccaggcatggtggtgggcaactgtaatcccagctactgggtaggctgaggcagaagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaa-ccacaacagtaaactt s rheMac2.chr11 247321 982 - 134511895 aaagatattaattttccacaaattaatttgcaaatttgataaattctcaatgaaaataccaagaaaaattttcattgtatttcatctaataattctaaCTCTCGTTAACGTAAAATAAAATCATATGCTTGGACTACTGCTGCTACAACTAGAAAATTTTAAATACTCTTATC-TTTTTAAAAAACCAGAGACCTGTGGAAGAAAGGAGGACTAAATAAACTAAAATTACAGAGAGAAAAGAGCTGCTCTTAGGTGAGCTA---------AAATTGCTGGCTGGTGCCCACCTGGGTCATTTGCTCAGCTTGAGGGCAGTGAAGGAAGGGCTCAGCCCAGACAGAGGACTAGGATAGGG-AAAGAGAAACCAGTGAAGGTTTTGATGCGCCCCAGTGGGCAGTGAGCTTTCCCCATGGGACATGTGTTGAGTGCTGGTCAGTGCAAGAAGCTGCAGGCTGGGCTGGAATGGCAGACTGAGTCTCCCACAGCCTCAAGGTGCTCCAGAAACAAAGTACCAGTAGAGACGAGCCTGCAATAAATACACCATCCAGAAACCCGAAGCCACAGGTAATAGAGTCCAGCCcctaaacagctcaattcctgtttaaactgaagtgatcagccattcccctactgcatgacagagaaaaggggaaatatcctctgatataaaacaacagtaaggtcaggcgtggtggctcacccctgtaatcccagcatttcaggaggccaaggtgggtggatcacctgaggtcaggagtttgtcgagaccagcctgaccaacatggtgaaatcccatctctactaaatatacaaaa--cagccaggcatggtggtgggcgcctgtaatctcagctactggggaggctgacgcagaagaattgcttgaacccaggaggcggaggttgcaatgagccgagatcacgccattgcactccagcctgggcgacaacgcaagactccatctcaaaaaaaacccacaacagtaaactt i rheMac2.chr11 I 857 C 0 s ponAbe2.chr12 273842 965 - 136387465 aaagatattaattttccacaaattaatttacaaatttgataaattctcaatgaaaataccaagaaagtttttCATTTTATTTCATCTAATAATTCTAACTCTCATTAATGTAAAATAAAATCATATGCTTGGACTActcctgctacaactagaaaattttaaatactcttatc-tttttaaaacaccagagacctgtagaagcaaggaggactaaacaaactaaaattgcagagagaaaagagctcctcttgggtgagcta---------aaattgctggctgttacctcgctgggccatttgctcagcttgagaacagtgaaggaagggctcggcccagacagaggactattctaggggaaagagaaaccagtgaaggttttgatgTGCCCTAGTGGACAGTGAgttttccccatgggacatctgttgagtgctggtcagtgcaagaagctgcaggctgggctggaatggcagactgagtct-ccacagcctcaagatgctCCAG------------AGTAGACAGGAGCCTGCAATAAATACACCATCCAGAAACCCGAAGCCACAGATAACAGAGTAcagcccctaaacagctcaattcctgttttgattgaggtgatcagccattcccctactgcatgacagagaaaaggggaaatatcctctgatacaaaacaacagtaaggccaggcatggtggctcacccctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttt---gagaccagcctgaccaacatggtgaaatccggtctctactaaatatacaaaaattatccagacatggtggtgggcacctgt-atcccagctactggggaggctgagg--gaagaattacttgaatccaggaggcggaggttgcagtgagccaagatcgcgccactgcactccagcctgggtgacagagcaagactctgtctcaaaaaaaa-tcacaacagtaaactt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 232730 980 - 135371336 aaagatattaattttccacaaattaatttacacgtttgataaattctcaatgaaaataccaagaaaggttttCATTTTATTTCATCTAATAATTCTAACTCTCATTAATGTAAAATAAAATCATATGCTTGGACTACTACTGCTACAGCTAGAAAATTTTAAATACTCTTGTCTTTTTTAAAACACCAGAGACCTGTGGAAGGAAGCAGGACGAAACAAACTAAAACTGCAGAGAGAAAAGAGCTCCTCTTGGGTGAGCTGGGTGAGCTGAAATTGCTGGCTGTTGCCTCGCTGGGCCATCTGCTCAGCTTGACAACAGTGAAGGAAGGGCTCGGCCCAGACAGAGGACTATTCTAGGGCAAAGAGAAACCAGTGAAGGTTTTGATGTGCCCCAGTGGACAGTGAGTTGTCCCCATGGGACATCTGTTGAATGCTGGTCAGTGCAAGAAGCTGCAGGCTGGGCTGGAATGGCAGACTGAGTCTCCCGCAGCCTCAAGGTGCTCCAGAAACAAAGTACCAGTAGAGAGGAGCCTGCAATAAATATACCATCCAGAAACCCGAAGACACAGGTAACAGAGTACAGCCCCTAAACAGCTCAATTCCTGTTTTGATTGAGGTGATCAGCCATTCCCCTACTGCATGACAGAGAAAAC----AACA-------ATATAAAACAACAATAAggtcaggcatggtggctcacccctgtcatcccagcactttgggaggccaaggtgggtggatcacctgaggccaggagttt---gagaccagcctgaccaacatggtgaaatcccgtctctactaaatatacaaaaattatccaggcatagtggtgggcacctgtaatcccagctactgggtaggctgaggcagaagaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaa-CCACAACAGTAAACTT i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_9962 39018 1862 - 51117 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=21051.000000 s hg19.chrUn_gl000223 110432 44 + 180455 cagtctctgtggttattccttttaa----aaca--------------------atgtcagcaaaaaat s panTro2.chr12 233710 44 - 135371336 CAGTCTCTGTGGTTATTCCTTTTAA----AACA--------------------ATGTCAGCAAAAATT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 274807 44 - 136387465 cagtctctgtggttattccttttaa----aaca--------------------atgtcagcaaaaaat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 248303 44 - 134511895 tagcctctgtggttattccttttaa----aaca--------------------atgtcagcaaaaaat i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_4996 134270 68 - 139067 CTGAGCcagtggctcacacctataatcctagcattttgggaggccaaggcaggatctctactaaaaat i micMur1.scaffold_4996 n 1862 n 1862 e vicPac1.scaffold_273630 650 13 - 820 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=153009.000000 s hg19.chrUn_gl000223 110476 299 + 180455 taaaaactttgagacatgaggcaggaaaatatgactgacaaaaggaataggcagataattgataaagatgcacagatgatccagatgatgttagcaaacaagtaatattacaaataactatcataatatataactatgtaaatatttaaaatacagagaagttgtatacagtgaataaaaggagaactggaattaaaaaaaaaaaAAAA---------CAAGGAGACATTTAGAAACAAACAACTGATCCCTGAAATGAGCATCAACGGGACAATGGCCAATACAAGTCTGTTAAGGATGTGGAGCAA s rheMac2.chr11 248347 297 - 134511895 taaaaactttgagacatgaggcaggaaaatatgactgacaaaaggaataggcagataattgatccagacgcacagatgatccagacgatgttagcagacaagtaatattacaaataactatcataatacataactatataagtatttaaaatacagagaagttatataaagagaataaaaagagaattggaatttaaaaaaaaaaaa-----------caaggagatatttagaaacgaacaactgatccctgaaatgaGCATCAGCGGGACAATGGCCAACACAAGCCTGTTAAGGATGTAGAGCAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 274851 297 - 136387465 taaaaactttgagacatgaggcaggaaaatatgactgacaaaaggaataggcagataattgataaggacgcacagatgatccagatgatgttagcaaacaagtaatattacaaataactatcataatatataactatataaatatttaaaatacagagaagttgtatacagtgaataaacggagaactggaattaaaaaaaaaaaaa-----------caaggagacatttagaaacaaacaattgatccctgaaatGAGCATCAACGGGACAATGGCCAGTACAAGTCTGTTAAGGATGTGGAGCAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 233754 308 - 135371336 TAAAAACTTTGAGACATGAGGCAGGAAAATATGACTGACAAAAGGAATAGGCAGATAATTGATAAAGATGCACAGATGATCCAGACGATGTTAGCAAACAAGTAATATTACAAATAACTATCATAATATATAACTATGTAAATATTTAAAATACAGAGAAGTTGTATACAGTGAATAAAAGGAGAACTGGAATTaaaaaaaaaaaaaaaaaaaaaaaaCAAGGAGACATTTAGAAACAAACAACTGATCCCTGAAATGAGCATCAACAGGACAATGGCCAATACAAGTCTGTTAAGGATGTGGAGCAA i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=93922.000000 s hg19.chrUn_gl000223 110775 131 + 180455 ACCATCCTTCTCGTGGGGTTGTGTTACTGTCCAGTGAGCGCATGGTGAGGGCAATACTGCTAACGCCTACACAACACACCCACATCAAC-----------------TATGGTGGTGCAATTTTTTGAAAAGTGGAAAACCTCTTTTCC------ s panTro2.chr12 234062 131 - 135371336 ACCATCCTTCTCATGGGGTTGTGTTACTGTCCAGTGAGCGCATGGTGAGGGCAATACCGCTAACGCCTACACAACACACCCACATCGAC-----------------TATGGTGGTGCAATTTTTTGAAAAGTGGAAAACCTCTTTTCC------ i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 275148 131 - 136387465 ACCATCCTTCTCGTGGGGTTGTGCTACTGTCCAGTGAGCACATGGTGAAGGCAATACTGCTAACACCTACACAACACACCCACATCAAC-----------------TACGGTGGTGCAATTTTTTGAAAAGTGGAAAACCTCTTTTCC------ i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 248644 131 - 134511895 ACCACCCTTCTCGTGGGGTTGTGCTACTGTCCAGTGAGCACATGGTGAGAGCAATACTGCTAACGCCTACGCAACACACCCACATCAAC-----------------TACAGTGGTGCAATTTTTTGAAAAGTGGAAAACCTCTTTTCC------ i rheMac2.chr11 C 0 C 0 s otoGar1.scaffold_16270.1-106231 37912 154 + 106231 ACCATCCTTTTCTTGGGGTTGCGCTACTGTCCCATAAGGGCCTAGCGAGGGTAGTATTGCTAACACCTACCGAACACGCTTGCATCAACTAACTAGAGCTTTGGTTTATATTGGTGCAATTTTTGGAAAAAAGAAAAATCTCCCCCCCCCCCGC i otoGar1.scaffold_16270.1-106231 N 0 N 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=146304.000000 s hg19.chrUn_gl000223 110906 297 + 180455 ATGAAAATAAAAAGggatatagagcaaatgcagttctcaattcctggtactgggaatgtgaagtcatttcgccactttggaaaactaagagtatgtactaaatttaaatatacgtatacaatgactcaacagtatcattcgtaagtatgtgcccagtggttctcaatgggcaggagggagattttgcccccccgggggcatttgacaatgtctggagccctttatggttgtcatagtggggcagtgctactggcacctacataagtcggggccaggaatgctgctcagcaacccacg s rheMac2.chr11 248775 287 - 134511895 ACGAAAATAAAAAaggatttagggcaaatgcagctctcaattcctggtactgggaatgtgaagtcatttcgccactttggaaaaccgagagtatgtactaaatgtaaatgtatgtacacggtgactcaacggtgtcactcgtaagtacgtgcccagtggttctcaacgggtaagagggagattttgtcccccagggggcatttgacaatgtctggagccatttacggttgtcacagtggggcagtgctgctggcacctacatgggtcggggccaggaatgctgctca---------- i rheMac2.chr11 C 0 I 315 s ponAbe2.chr12 275279 296 - 136387465 ATGAAAATAAAACGggatatagagcaaatgcagctctcaattcctggtactgggaatgtgaagtcatttcgccactttggaaaactgagagtatgtactaaatttaaatatatgtgtacaatgactcaacagtatctttcctaagtatgtgcccagtggttctcaatgggtaggagggagattttg-ccccccgggggcatttgacaatgtctggagccatttacggttgtcatagtggggcattgctactggtacctacataggtcgaggccaggaatgctgctcagcaacccacg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 234193 297 - 135371336 ATGAAAATAAAAAGggatatagagcaaatgcagttctcaattcctggtactgggaatgtgaagtcatttcgccactttggaaaactaagagtatgtactaaatttaaatatacgtatacaatgactcaacagtatcattcgtaagtatgtgcccagtggttctcaatgggcaggagggagattttgcccccccgggggcatgtgacaatgtctggagccctttacggttgtcatagtggggcagtgctactggcacctacataagtcggggccaggaatgctgctcagcaacccacg i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=201823.000000 s hg19.chrUn_gl000223 111203 252 + 180455 atgcacaggacgttcctccacaacaaagaattattccatccaaaatgtcaatagtgctgaggttgaaaaatcctggtatgtgcctaacagaaatgatagttgatgtctaccaaaacaaatgtacaaaaaggttcaaagtcgtgttatctaaaataaccagtaactgaaaacaacctaaacactgatgtt---gataacagattattacaacagacaaattatgaaatgttcatacaacagaatatcatacaacTT s gorGor1.Supercontig_0148548 1 246 + 987 ---------ACGTTcctccacaacaaagaattattccatccaaaatgtcaatagtgctgaggttgaaaaatcctggtatgtgcctcacagaaatgatagttgatgtctaccaaaacaaatgtacaaaaatgttcacagtcgtgttatctaaaatagccagtaactgaaaacaacctaaacactgatgttgatgataacagattattacaacagacaaattatgaaatgttcatacaacagaatatcatacaacTT i gorGor1.Supercontig_0148548 N 0 C 0 s rheMac2.chr11 249377 247 - 134511895 atgcacaggacgttcctccacaacaaagaattattcagtccaaaatgtcaatagtgctgaggctgaaaaatcctggtatgtgcctaacagaaatgacagctgatgtctacc-----aaatgtacaaaaatattcgtagtagtgttattgaaaatagcccgtaactgaaaacaacctaaacactgatgtt---gataatagatgattacaagagacaaactatgaaatgttcatacaacagaatatcatacaactt i rheMac2.chr11 I 315 C 0 s ponAbe2.chr12 275575 253 - 136387465 atgcacaggacgttcctccacaacaaagaattactccgt-caaaatgtcaatagtgctgaggttgaaaaatcctggtatgtgcctaa-agaaatgatagttgatgtctaccaaaagaaatgtacaaaaatcttcacagtcgtgttatctaaaatagccagtaactgaaaacaacctaaacacggttgttgacgataacagatgattacaagagacaaattatgaaatgttcatacaacagaatatcatataacTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 234490 255 - 135371336 atgcacaggacgttcctccacaacaaagaattattccatccaaaatgtcaatagtgctgaggttgaaaaatcctggtatgtgcctaacagaaatgatagttgatgtctaccaaaacaaatgtacaaaaatgttcaaagtcatgttatctaaaatagccagtaactgaaaacaacctaaacactgatgttgacgataacagattattacaacagacaaattaagaaatgttcatacaacagaatatcatacaacTT i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3219524 2008 + 42029645 I a score=271525.000000 s hg19.chrUn_gl000223 111455 263 + 180455 CACAAAAATAAGCCAACACAAACATTTTAAGGATATAAACATATGCATTAAAAATGTACAGGGAAAGACCTAGAAGAATATCTATCAAACTGATTACCTCCGAGGAGAGAGAGGGGATTGGGATGGGTGGGTGGTTATAAGAGACTGAATTGTGTTCTAAGAGAAT------------CAACTGTATCATCAAAAATTAATAGttccagttctgcatgta---aagagtttggaagtagccactctgtcct---aacaagtaaaa------agtttaacaaactgaa s panTro2.chr12 234745 263 - 135371336 CACAAAAATAAGCCAACACAAACATTTTAAGGATATAAACATATGCATTAAAAATGTACAGGGAAAGACCTAGAAGAATATCTATCAAACTGATTACCTCCGAGGAGAGAGAGGGGATTGGGATGGGTGGGTGGTTATAAGAGACTGAATTGTGTTCTAAGAGAAT------------CAACTGTATCATCAAAAATTAATAGttccagttctgcatgta---aagagtttggaagtagccactctgtcct---aacaagtaaaa------agtttaacaaactgaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 275828 263 - 136387465 CACAAAAATAAGCCAACACAAACATTTTAAGGATATAAACATATGTATTAAAAATGTATGGGGAAAGACCTAGAAGAATATCTATCAAACTGATTACCTCCGAGGAGAGAGAGGAGATTGGGATGGGTGGGTGGTTATAAGAGACTGAATTGTGTTCTAAGAGAAT------------CAACTGTATCATCAAAAATTAACAGttccagttctgcatgta---aagagtttggaagtagccactctgtcct---aacaagtaaaa------agtttaacaaactgaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 249624 276 - 134511895 cacaaaaataaaccaacACAAACATTTTAAGGATATAAACATCTGCATTAAAAATGTATAGGGAAAGACCTAGAAGAATATCCACCAAACCGATTACCTCCGAGGAGAGAAAGGGGATTGGGATGGGTGGGTGGTTATAAGAGAC--AATTGTGTTCTAAGAGAATGTAGAAAAATAGCAACTGTATCATCAAAAATTAATAGttccagttctgcatgta---aagagcctggaagcagccactctgtcctaacaacaagtaaaa------agcttaacaaactgaa i rheMac2.chr11 C 0 C 0 s gorGor1.Supercontig_0148548 247 263 + 987 CACAAAAATAAGCCAACACAAACATTTTAAGGATATAAACATATGCATTAAAAATGTACAGGGAAAGACCTAGAAGAATATCTATCAAACTGATTACCTCTGAGGAGAGAGAGGGGATTGGGATGGGTGGGTGGTTATAAGAGACTGAATTGTGTTCTAAGAGAAT------------CAACTGTATCATCAAAAATTAATAGttccagttctgcatgta---aagagtttggaagtagccactctgtcct---aacaagtaana------agtttaacaaactgaa i gorGor1.Supercontig_0148548 C 0 C 0 s canFam2.chr26 3221532 270 + 42029645 CAGACAAATAAAC-----CAAACATTTTAAGGATATAAATGACTGTA-GACAAATGTACATAAAAAGATCTAGAAGAACATATGCCAAATTGATTATCTCTGA-CAAAGAAAAGGGATTAGGGCAGGAAGGTAATTATA--AGATTGAACTTTGTTCTAAGAGAATGTAAAAAAGTACTAAATATATCACCAAAAATCAACA-----AGATAAGAATATCCATAGGCGTGcagagttgttcactgtttcaa---aatttgtaaaagtgactagctcaacaacctgaa i canFam2.chr26 I 2008 I 7198 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I a score=174311.000000 s hg19.chrUn_gl000223 111718 203 + 180455 aaatcaacaactcttcttagatctgaaagagaagtgaagatacaaggcaaacaaaccactgtccccaaaattagagacaggcagaaacacagtagttaccagatcacaaatctctgtgagaa--agcgtcaggacagaaatacctgaactgcaactgacaaattgctagaggctaggtgtgtacatgtttgaagttaaaaagtcc s panTro2.chr12 235008 203 - 135371336 aaatcaacaactcttcttagatctgaaagagaagtgaagatacaaggcaaacaaaccactgtccccaaaattagagacaggcagaaacacagtagttaccagatcacaaatctctgtgagaa--agcgtcaggacagaaatacctgaactgcaactgacaaattgctagaggctaggtgtgtacatgtttgaagttaaaaagtcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 276091 201 - 136387465 aaatcaacaactcttcttagatccgaaagagaagtgaagatacaagg----caaaccactgtccccaaaattagagacaggcagaaacacagtagttaccagagcacaaatctctgtgagaaacagtgtcaggacagaaatacctgaactgcaactggcaaattgctagaggctaggtgtgtgcatgtctgaagttaaaaagtcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 249900 199 - 134511895 aaatcaacaactcttcttagatctgaaagagaagtgaaaatacaggg----caaaccactgtccccaaaattagagacaggcagaaacacagtacttaccagagcacaaacctctgtgagaa--agtgtcaggatagaaatacctgaactgcaactgacaaattgccagaggctaggtgtgtacgtgtctgaagttaaaacgtcc i rheMac2.chr11 C 0 I 4861 s gorGor1.Supercontig_0148548 510 203 + 987 aaatcaacaactcttcttagatctgaaagagaagtgaagatacaaggcaaacaaaccactgtccccaaaattagagacaggcagaaacatagtagttaccagatcacaaatctctgtgagaa--agcgtcaggacagaaatacctgaactgcaactgacaaattgctagaggctaggtgtgtccatgtctgaagttaaaaagtcc i gorGor1.Supercontig_0148548 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=145644.000000 s hg19.chrUn_gl000223 111921 267 + 180455 agggggacccagtcatggtgggagtggagggagacaaagtcccaagcttttctgagttttactttcaggagctcaaccaggttcccagagcctaatatattggggttttgtcagagcttaactaacctgagggaagagagatataccaaattccaccctgtcccatctaagagatggggtgggggtggcctgggaaatacttgtgaggttgagagtccaggagaacaggctcacaaagagacagacctaatcaggggcctacagaat s panTro2.chr12 235211 265 - 135371336 agggggacccagtcatggtgggagtggagggagacaaagtcccaagcttttctgagttttactttcaggagctcaaccaggttcccagagcctaatatactggggttttgtcagagcttaactaacctgagggaagagagatataccaaattccatcctgtcccatctaagggatggggtgggggtggcctgggaaatacttgtgaggttgaaagtccaggagaacaggctcac--agagacagacctaatcaggggcctacagaat i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0148548 713 267 + 987 agggggacccagtcatggtgggagtggagggagacaaagtcccaagcttttctgagttttactttcaggagctcaaccaggttcccagagcctaatatactggggttttgtcagagcttaactaacctgagggaagagagatataccaaattccatcctgtcccatctaagggttggggtgagggtggcctgggaaatacttgtgaggttgagagtccaggagaacaggctcacaaagagacagacctaatcaggggcctacagaaT i gorGor1.Supercontig_0148548 C 0 N 0 s ponAbe2.chr12 276292 267 - 136387465 aggcggacccagtcatgatgggagtggagggagacaaggtcccaagcttttctgagttttactttcaggagctcaaccaggttcccagagcctaatatactggggttttgtcagagcttaactaacctgagggaagagagatataccaaattccatcctgtcccatctaagggatggggtgggggtggcctgggaaatacttgtgaggttcggaatccaggagaacaggctcacaaagagacagacctaatcaggggcctacagaat i ponAbe2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 250099 4861 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=663768.000000 s hg19.chrUn_gl000223 112188 2523 + 180455 gctcaccctttcctgacatctcatcaccacattagtaaagtactattaaaagtaattccttttactcagtacatcatgtctagctatgaatgtaaagggacaaggcaatactaaaaggcaaaaaaacat----agggcaaccacgcgccgtggctcacgcctgtaatcccagcactctgggaggccgaggggggtagatcacctgaggtcaggaattcgagatcagcctggccagtatggtgaaaccccgtctctactaaaaatacaaaaatcagccgggcatggtggagtgcacctgtagtcccagctactcgggaggctgaggcagaagaatcacttgaacccaacaggcggaggttgtagtgagccaagatcacaccactgcactccagcctggactccatctcaaaaaaaaaaataaaaacaaaaacaaaaacacagacagggcaagcatcagaaccagacatgatagggatgttgaaggtatcagacaaaacttaaaacaaccatgaataatatgttatgggctctagtgaataaagtaggcagcatgtaagaacagatgggcaggccaggcgtagtggctcacacctgtaatcccagcactttgagaggctgaggtgggtagatcacttgaggtcagaagttcgaaaccagcctaaccaacatactgaaactctgtctctactaaaaatacaaaaattagctaggcacggtggtgcgcacctgtagtcccagctactcaggaggctgaggcacaagaatggcttgaacctgagaggtagaggctgcagtgagcccagatcgcaccactgcactccagcctgggcaagaaagtgagactccatctc-----aaaaaaaaaaaaaaagaaatactagtgatcaaaaacactgtacagaagtgaagaatgcctttgatgggcttatgtattatgtagactgcacgagattgaggaaaaaaatctttgaacttaaggatgtatcaacagaaaccttcaagcaaagagaacactggg-gaaaaaaaaaaagaacagaatatccaaga----tggacagccacaaaaggtgtagatatgcacaatggaaatacccgaaggaaaggaaaagaacagaagaaaGAcagtcggtgcctgacgcacagtggtttgacttagtatttttcaattttacaatggcgcagaagcaatacac-ttcagtacgttccccaacttatgatgaggctccatctggataaacctattataagttgaacatattgtaagtcgaaaatgcacttctgacaaagagattttcaatttatgatgagtttatcaggatgtaaccacatcatcaagtcaa---------ggagcatctatatatgaaacaataattactgaaaatttcgctgaagtaatgtcagacaccaaatcacagatggaggaaaatccgagaataccaagaagataaatgccaaaaaacctgcacgtaggcatatcatttttaaaacacaaaaaatcaaagataagccaga-gatgaaaaaaaataccttacctacagaaaccacacaagcaagaaaatggagtgaaacagttaaggtgtttagagaaaaaaaaatcatcaaaacagaattctgtaccctgcaaaattatccttcaaaagt--aaaaaaaagtctttctcaaacaaaaactaagataatttattgctatttcaagtaaacttgccttaactaggcagaaaaggaaaatacaggtcagaaacacagatacacttttttttttttgagatagggtcttaccctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacccccgcctcctgggttcaagcgattctcatacctcagcctcccaagtagccaggcctacaggcacgcaccaccatgcccagctaatttttgtatttgtagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaaatgacccgccggcctcagcctcccagagtgctgggattacagggatgagccgccaggcccggccacagatatatattttaaaaagtgagaacatcaaagaaagaataagtgaaagtaaaattaaaattttttttctgatcatttttttgagacggtctcgctctgttgcctaagctggagtacagtggcacagcagcctcgaactcctgggctcacctcaccatctcacctcccaagtagctggggctacaggtgcacactagcacacctgg-ttttttttttaggttttttttttttttgttgttgttgttgttttgtataggcaaggtctctgcgttgcccaggctggtctcaaactcctggct-------------------tcagtctcccaaagtgctgggattacaggcatcagccaccatgcctagctatttttattttGTTGTTGTTGTTgagtctcgctctgtcgcccgggctggagtgcagtggcacgatcttggcttactgcaacctctgcttcctgagttcaagcgattctcctgcctcagcctcctgagcagctggga-ttacaggtgtgt s panTro2.chr12 235476 2534 - 135371336 gctcaccctttcctgacatctcatcaccacattagtaaagtactattaaaagtaattccttttactcagtacatcatgtctagctatgaacgtaaagggacaaggcaatactaaaaggcaaaaaaacat----agggcaaccacgcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggggggtagatcacctgaggtcaggaatccgagataggcctggccagtatggtgaaaccccgtctctactaaaaagacaaaaatcagccaggcatggtggagtgcacctgtagtcccagctactcgggaggctgaggcagaagaatcacttgaacccaagaggcggaggttgtagtgagccaagatcacaccactgcactccagcctggactccatctcaaaaaaaaa---------aaaaaaaaaaacacagacagggcaagcatcagaaccagacatgatagggatgttgaaggtatcagacaaaacttaaaacaaccatgaataatatgttatgggctctagtgaataaagtaggcagcatgtaagaacagatgggcaggccaggcgtagtggctcacacctgtaatcccagcactttgagaggctgaggtgggtagatcacttgaggtcaggagttcgaaaccagcctaaccaacatactgaaactctgtctctactaaaaatacaaaaattagctaggcacggtggagcgcacctgtagtcccagctactcaggaggctgaggcacaagaatggcttgaacctgagaggtagaggctgcagtgagcccagatcgcaccactgcactccagcctgggcaagaaagtgagactccatctc---aaaaaaaaaaaaaaaaagaaatactagtgatcaaaaacactgtacagaagtgaagaatgcctttgatgggcttatgtattatgtagactgcacaagattgaggaaaaaaatctttgaacttaaggatgtatcaacagaaaccttcaagcaaagagaacattggg-gaaaaaaaaaaagaacagaatatccaaga----tggacagccataaaaggtgtagatatgcaaaatggaaatacccgaaggaaaggaaaagaacagaagaaaGAcagccggtgcctgacgcacagtggtttgacttagtatttttcaattttacaatggcgcagaagcaatacac-ttcagtacgttccccaacttatgatgaggctccatctggataaacctattataagttgaacatattgtaagtcgaaaatgcacttctgagaaagagattttcaatttatgatgagtttatcaggatgtaaccacatcatcaagtcaa---------ggagcatctatatatgaaacaataattactgaaaatttcgctgaagtaatgtcagacaccaaatcacagatggaggaaaatccgagaataccaagaagataaatgccaaaaaacctgcacgtaggcatatcatttttaaaacacaaaaaatcaaagataagccaga-ggcgaaaaaaaataccttacctacagaaaccacacaagcaagaaaatggagtgaaacagttaaggtgttcagagaaaaaaaaatcatcaaaacagaattctgtaccctgcaaaattatccttcaaaagtaaaaaaaaaagtctttctcaaacaaaaactaagataatttattgctatttcaagtaaacttgccttaactaggcagaaaaggaaaatacaggtcagaaacacagatacacttttttttttttgagatagggtcttaccccgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacccccgcctcctgggttcaagcgattctcatacctcagcctcccaagtagccaggcctacaggcacgcaccaccatgcccagctaatttttgtatttgtagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaaatgacccgccggcctcagcctcccagagtgctgggattacagggatgagccgccaggcccggccacagatatatattttaaaaagtgagaacatcaaagaaagaataagtgaaagtaaaattaaaa-tttttttcttatcatttttttgagacggtctcgctctgttgcctaagctggagtacagtggcacagcagcctcgaactcctgggctcacctcaccatctcacctcccaagtagctggggctacaggtgcacactagcacacctggtttttttttttagg----tttttttgttgttgttgttgttgttttgtataggcaaggtctctgcgttgcccaggctggtctcgaactcctggcttcaagcgagcctcctgccctcagtctcccaaagggctgggattacaggcatcagccaccatgcctagctatttttattttGTTGTTGTTGTTgagtctcgctctgtcgcccgggctggagtgcagtggcacgatcttggcttactgcaacctctgcttcctgagttcaagcgattctcctgcctcagcctcctgagcagctgggatttacaggtgtgT i panTro2.chr12 C 0 M 669 s ponAbe2.chr12 276559 2557 - 136387465 gctcaccctttcctgacatctcaccaccacattagtgaagtactattaacagtaattctttctactcagtacatcatgtctagctatgaatgtaaagggacaaggcaatactaaaaggcagaaaaacatagacagggcaaccacgcgcggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagatcagcctggccagtatggtgaaaccccgtctctactaaaaatacaaaaatcagccaggcgtggtggtgtgcacctgtagtcccagctactcaggaggctgaggcagaagaatcacttgaacccaagaggtagagtttgcagtgagccaagaccacaccactgcactccagcctggactccgtctcaaaaaaaaaaaaaaaaa-aaaaaaaaaagcacagacaaggcaagcatcagaaccagacacgatagggatgttgaaggtatcggacaaaacttaaaacaaccatgaataatatgttatgggctctagtgaataaagtagacagcatgcaagaacagatgggcaggccaggcgtagtggctcacatctataatcccagcaatttgagaggctgaggtgggtagatcacttgaggtcaggagtttgaaaccagcctagccaacatagtgaaactctgtctctactaaaaatacaaaaattagccaggcacggtggtgcacacctgtagtcccagctactcaggaggctgaggcacaagaatggcttgaacccaggaggcagaggctgcagtgagcccagatcgcaccactgcactccagcctgggctagaaagtgagactccgtctcaaaaaaaaaaaaaaaaaaaagaaatactagtgatcaaaaacactgtacagaagtgaagaatgcctttgatgggcttatgtattatgtagactgcaagagattgaggaaaaaaatctttgaacttaaggatggatcaacagaaacctccaagcaaagagaacactgggcaaaaaaaaaaaagaacagaatatccaagaactgtggacagccataaaaggtgtagatatgcacaatggaaatacccgaaggaaaggaaaagaacagaagaaagacagctggtgcctgacgcacagtggtttgacttagtatttttcagttttacaacggcgcagaagcaatacatattcagtacgttccccaacttatgatgaggctccatctggataaacctattataagttgaacatattgtaagtcgaaaatgcacttctgacaaagagattttcaatttatgatgagtttatcaggatgcaaccacatcattaagtcaaggagcatctggagcatctatatatgaaacaataattactgaaaattttgctgaaat-atgtcagacaccaaatcacagatggaggaaaatccgagaataccaagaacataagtgccaaaaaacctgcacgtaggcatatcgtttttaaaacacaaaaaatcaaagataagccagagggaaaaaaaaaataccttacctacagaaaccacacaagcaagaaaatggagtgaaacagttaaggtgtttagag-aaaaaaaatcatcaaaacagaattctgtaccctgcaaaattatacttcaaaagt---aaagaaagtctttctcaaacaaaaactaagataatttattgctattacaagtaaacttgccttaactaggcagaaaaggaaaatacaggtcagaaacacggatacac-tttttttttttgagacaaggtcttactctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacccctgcctcctgggttcaagcgattctcatacctcagcctcccgagtagccaggactacaggcacgcaccaccatgcccggctaatttttgtatttgtagtagagacagggtttcaccatgttggtcaggctggtctcgaacttctgacctcaaatgacccgcccgcctcggcctcccagagtgctgggattacagggatgagccgccaggcccggccacagatacatattttaaaaagtgagaacatcaaagaaagaataagtgaaagtaaaattaaaa-tttttttcttatcatttttttgagacggtctcactctgttgcctaagctggagtacagtggcacggcagcctcgaactcccgggcccacctcaccatctcacctcccaagtagctggggctacaggtgcacactagcacacctg--ttttttttttagg---tttttgttgttgttgttgttgttgttttgtataggcaaggtctctgcattgcccaggctggtctcgaactcctggcttcaagcgagcctcctgccctcagtctctgaaagtgctgggattacaggcgtcagccaccatgcctagcTATTTTTCTTTTATTGCTGTTGTTgagtctcgctctgtcgcccgggctggagtgcagtggcacgatcttggcttactgcaacctctgcttcctgagttcaagcgattctcctgcctcagcctcttgagcagctggga-ttacaggtgtgt i ponAbe2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 250099 4861 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=4382.000000 s hg19.chrUn_gl000223 114711 50 + 180455 gccaccatgcccggcgctaacttttgtatttttagtagtgacagggtttc s ponAbe2.chr12 279116 50 - 136387465 gccaccatgtccggcgctaacttttgtatttttagtagcaacagggtttc i ponAbe2.chr12 C 0 M 411 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 238010 669 - 135371336 M e rheMac2.chr11 250099 4861 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 114761 160 + 180455 accatgttgatcaggctggtcttgaacatctgacctcgtgattcacccgcctcggcctcccaaagtgctgggattacaggcctgagccaccacgcccagccATGCCTAGCTATTTTTCTTATACTTAGTTGACCTAGTCTGTTCAAAATAGTAATGGAgg e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 238010 669 - 135371336 M e ponAbe2.chr12 279166 411 - 136387465 M e rheMac2.chr11 250099 4861 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=23413.000000 s hg19.chrUn_gl000223 114921 249 + 180455 ctgggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctctactaaaaacgcaaaaattagccgggcatggtggcacacacctgtacttccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccatgatcatgccactgcactc s panTro2.chr12 238679 249 - 135371336 ctgggcacagtggctcacgcctgtaaccccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagttcgagaccagcctggccaacacagtgaaaccctgtctctactaaaaacgcaaaaattagccgggcatggtggcacacacctgtacttccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgtgatcatgccactgcactc i panTro2.chr12 M 669 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 279166 411 - 136387465 M e rheMac2.chr11 250099 4861 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=732746.000000 s hg19.chrUn_gl000223 115170 2744 + 180455 cagcctgggtgacagagtgagactctatcaaaaaaataaaaagaaaaaaggacaataaaggaacatcatactatgtacaattctacgtccacacatttcatgacctagatgaaacagaccaaatccctgaaagacacaatctgccaaaactgaacaaaaagaaacagacactctaataagcctaaattgaatcaaaaattaagaatcacccaaaccagaaagtgccaggccaagatgggttcactcactggtgaagtctaccaaacatttaaggaaaaaaatcacaccaatctttttttccctctacaatatttttcagaagataaaggcagagggaatcctaactcagtctataaagacagcatcgctctaataccaaaaccagacagaaaccctagaaaactacagaaaaattatctcataaatatagatacaaaaatcctcaacaaaatactagaaaataaaatacaacaatgtataaaaacaagtgtacaccacagccaagtgggatttattcctggtatgtaaggttggttcaatacttgaatcagttccatcgtatcaaatgactaaagaagaaaaagcatagatagatgcagaaaaaactttttttcttttttgagacagggtctcgctctgtcacccaggctggagtgcagtggtgcaaacatggctcacagcagcctcaacctcccaggctcaagcaatccttccacttcagcctcctcagtagctgagactacaggcatgtgtcaccacgcccagctattttgttttttaattttttgtagagatggggtctcactatgttgcccaggctggtcctgaattcctaggctaaagctatcctcctgcctcagcctcccaaagtgattacaggtgtgagccacatctggcccagaaaaaaaatctgacaaaatccaaccccattcacaattaacaacaacaaaaaccctcactaaactaggaacaagggtctttctcaacttgatagagaatatctaccaagaaaaatgctacaactaacatcatacttaactgtgagaaacttgaagctttcccactaagatcaacaaggcaaaatgtatctttaatcccctctcaccactctttttcaacattgtactggaagtcctatctgaggcaaaaaaacaagaacagaaaatacaggatgagaatccctgttccaaaaacctgaaatctaaatgctccaaaattcaaaacgttttgagtcctcacacgtggaaaatcccacacattaacttaatacaacctttgtttcacacacaaaattatttaaaatactgtataaaattaccttcaggctgtacgtataaagtatatatgaaacataaacaaattctgtgtttagacttgggtcccatccccaagatatcttatgtatatgtaaatagtccaagatctgaaaaaatccaaaatccaaaacaattctggtcttaagcattttgaataa-----aag---atacttaacctgtaaaatgtataatgactgtgaaggaaggaataaaactttgttcacagatggcataattgtgcaaagtccaaaagaattcaccagacccggcacggtggctcatggctgtaatcctagcactttaggaggccgaggtgggctgatcacgaggtcaggagatcgagaccatcct-gctaacacagtgaaactccatttctactaaaaatacaaaaaaattagatgggcgtggtggcacatgcctgtagtaccagctactcaggaggctcaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctggccaacagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaattcaccgaaagactcctggaactacatgattataccaaggttgcaggatacaaagttaatatacaaaagtcaacccctttcctgtacacaggtgtaagctgaatttgaaataaaaaacacaataccatttacagtagcacccacaaaaattaaatacttaggtgtaagtctaacaaaatatataatgatactatataaaatctatatgagaaaaactaccaaacactgctgaatgaaaactaagaactagatagagagatataacatgttcatggataggaagactcaatattcaagacttcagctcttcccaacttgatctacagattgaatgcactgtcagttaaa----atcccagcaagttattttgcagatgttgacaaactgattataaagttcagacagacaaaagacttagattagctaacaggatacggaagcagaagaatacatttgggagaatgaacctgacttcaagacttataggctgggcatggtggctcacacctgttatcccaccaatgctttgggaggccaaggaggaagaagtgcttgaggccaagagttgcaggccagccagggcaacacagtgagaccctatctgtacaaaaaaaaaaaaaaat----ttttaattagcctgatgtggtggcatatgcctgtaatcccagctactcaggaggctgaggt-ggaggatcccttgagcccgggagttcgaggctgcagtgagttgtgactgttccactgcactccaacctgggcaacagagtgagatcctgccttgaaaaaaaaacaaaagatttactataaagaccagcctgggcaacatggctaaactccatcgctacaaaatatacaaaaattacccggactg s ponAbe2.chr12 279577 2731 - 136387465 cagcctgggtgacagagcaagactctatttaaaaaa-aaaaagaaaaaaggacaataaaGGCACATCatactatgaacaattctacgtccacacatttcatgacctagatgaaacagatcaaatccctgaaagacacaatctgccaaaactgaacaaaaagaaacagacactctaataagcctaaattgaatcaaaaatcaagaatcattcaaaccagaatgcgccaggccaagatgggttcactcactggtgaagtctaccaaacatttaagg--aaaaatcacaccaatcattttttccctctacaatatttttcagaatataaaggcagagggaatcctaactcagtatataaagacaacatcgctctaataccaaaaccagacagaaaccctagaaaactatagacaaattatctcataaatatagatacaaaaatcctcaacaaaatactagaaaataaaatacctcaatgtataaaaacaagtgtacaccacagccaagtgggatttattcctggtatgtaaggctggttcaatacttgaatcagttccatcgtatcaaatgactaaagaagaaaaagcataaatagatgcagaaaaaactttttttcttttttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcaaacatggcccacggcagcctcgacctctcaggctcaagcaatccttccacttcagcctcctcagtagctgagactacaggcatatgtcaccacgcccagctattttgttttttaattttttgtagagatggggtctcactatgttgcccaggctggtcctgaactcctgggctaaagctatcctcctgcctcagcctcccaaagtgattacaggtgtgagccacatctggcccagaaaaaaaatctgacaaaatccaaccccattcacaattaacaacaacaaaaaccctcactaaactaggaataaagatctttctcaacttgatagagaatatctaccaagaaaaacgctacaactaacatcatacttaactgtgagaaacttgaagctttcccactaagatcaataaggcaaaatgtatctttaatcccctctcaccactctttttcaacattgtactggaagtcctatctgaggcaaaaaaacaagaacagaaaatacaggatgagaatccctgttccaaaaacctgaaatctaaatgctccgaaattcaaaa-----------atgacatgtggaaaatcccacacattaacttaatacaacctttgtttcacacacaaaattatttaaaatactgtataaaattaccttcaggctatatgtataaggtatatatgaaacataaacaaattctgtgtttagacttgggtcccatccccaagatagcttatgtatatgtaaacagtccaagatctgaaaaaatccaaaatccaaaacaatcctggtcttaagcattttgaataa-----gag---atacttaacctgtaaaatgtataatgactgtgaaggaaggaataaaactttgttcacagatgacataattgtgcaaagtccaaaagaattcaccaggccaggcacggtggctcacggctgtaatcccagcactttaggaggccgaggtgggcagatcacgaggtcaggagattgagaccatcctggctaacacagtgaaactccgtttctactaaaaatacaaaaaaattagatgggcgtggtggcacgtgcctgtagtaccagctactcgggaggctcaggcaggagaatcgcttgaactcaggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctggccaacagcgagactctgtctcaaaaaaaaaaaaaaaaaaa---------ttcaccaaaaaactcctggaactaagtgactataccaaggttgcaggatacaaagttaatatacaaaagtcaacccctttcctgtacacagatgtaagctgaatttgaaataaaaaacacaataccatttacagtagcacccacaaaaattaaatacttaggtgtaagtctaacaaaatatataatgatactatataaaatctatatgagaaaaactaccaaacactgctgaatgaaaactaagaactagatagagagatataacatgttcatggataggaagactcaatatccaagacttcagctcttcccaacttgatctacagattgaatgcactgtcagttaaaatccatcccagcaagttattttgcagatgttgacgaactgatgataaagttcagacagacaaaagacttagattagctaacaggatactgaagcaaaaggataaagttgggagaatgaacctgacttcaagacttataggctgggcatggtggctcacacctgttatcccaccaatgctttgggaggctaaggaggaagaagtgcttgaagccaagagttgcaggccagccagggcaacacagtgagaccctatctgtacaaaaaaaaaaaaaaaaaaaaatttagttagcctgatgtggtggcatgtgcctgtaatcccagctactcaggaggctgaggcgggaggatcccttgagcccaggagttcgaggctgcagtgagctgtggctgttccactgcactccaacctgggcaacagagtgagatcctgccttgaaaaaaaaacaaaagatttactataaagaccaacctgggcaacacggcaaaaccccatcgctacaaaatatacaaaaattacccgggctg i ponAbe2.chr12 M 411 C 0 s panTro2.chr12 238928 2750 - 135371336 cagcctgggtgacagagtgagactctatcaaaaaaataaaaagaaaaaaggacaataaaggaacatcatactatgtacaattctatgtccacacatttcatgacctagatgaaagagaccaaatccctgaaagacacaatctgccaaaactgaacaaaaagaaacagacactctaataagcctaaattgaatcaaaaattaagaatcacccaaaccagaaagtgccaggccaagatgggttcactcactggtgaagtctaccaaacatttaaggaaaaaaatcacaccaatctttttttccctctacaatatttttcagaagataaaggcagagggaatcctaactcagtctataaagacagcatcgctctaataccaaaaccagacagaaaccctagaaaactatagaaaaattatctcataaatatagatacaaaaatcctcaacaaaatactagaaaataaaatacaacaatgtataaaaacaagtgtacaccacagccaagtgggatttattcctggtatgtaaggttggttcaatacttgaatcagttccatcgtatcaaatgactaaagaagaaaaagcatagatagatgcagaaaaaactttttttcttttttgagacagggtctcgctctgtcacccaggctggagtgcagtggtgcaaacatggctcacggcagcctcaacctcccaggctcaagcaatccttccacttcagcctcctcagtagctgagactacaggcatgtgtcaccacgcccagctattttgttttttaattttttgtagagatgaggtctcactatgttgcccaggctggtcctgaattcctgggctaaagctatcctcctgcctcagcctcccaaagtgattacaggtgtgagccacatctggcccagaaaaaaaatctgacaaaatccaaccccattcacaattaacaacaacaaaaaccctcactaaactaggaataagggtctttctcaacttgatagagaatatctaccaagaaaaatgctacaactaacatcatacttaactgtgagaaacttgaagctttcccactaagatcaacaaggcaaaatgtatctttaatcccctctcaccactctttttcaacattgtactggaagtcctatctgaggcaaaaaaacaagaacagaaaatacaggatgagaatccctgttccaaaaacctgaaatctaaatgctccaaaattcaaaacgttttgagtcctgacatgtggaaaatcccacacattaacttaatacaacctttgtttcacacacaaaattatttaaaatactgtataaaattaccttcaggctgtacgtataaggtatatatgaaacataaacaaattctgtgtttagacttgggtcccatccccaagatatcttatgtatatgtaaatagtccaagatttgaaaaaatccaaaatccaaaacaattctggttttaagcattttgaataagtaataagcatatacttaacctgtaaaatgtataatgactgtgaaggaaggaataaaactttgttcacagatgacataattgtgcaaagtccaaaagaattcaccagacccggcacggtggctcacggctgtaatcccagcactttaggaggccgaggtgggctgatcacgaggtcagcagatcgagaccatcct-gctaacacagtgaaactccatttctactaaaaatacaaaaaaattagatgggcgtggtggcacgtgcctgtagtaccagctactcgggaggctcaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctggccaacagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaa-----ttcaccaaaagactcctggaactacgtgattataccaaggttgcaggatacaaagttaatatacaaaagtcaacccctttcctgtacacaggtgtaagctgaatttgaaataaaaaacacaataccatttacagtagcacccacaaaaattaaatacttaggtgtaagtctaacaaaatatataattatactatataaaatctatatgagaaaaactaccaaacactgctgaatgaaaactaagaactagatagagagatataacatgttcatggataggaagactcaatattcaagacttcagctcttcccaacttcatctacagattgaatgcactgtcagttaaa----atcccagcaagttattttgcagatgttgacgaactgattataaagttcagagagacaaaagacttagattagctaacaggatacggaagcagaagaatacagttgggagaatgaacctgacttcaagacttataggctgggcatggtggctcacacctgttatcccaccaatgctttgggaggccaaggaggaagaagtgcttgaggccaagagttgcaggccagccagggcaacaaagtgagaccctatctgtacaaaaaaaaaaaaaaaa-aaattttaattagcctgatgtggtggcatgtgcctgtaatcccagctactcaggaggctgaggt-ggaggatcccttgagcccgggagttcgaggctgcagtgagttgtgactgttccactgcactccaacctgggcaacagagtgagatcctgccttgaaaaaaaaacaaaagatttactataaagaccagcctgggcaacatggctaaactccatcgctacaaaatatacaaaaattacccggacta i panTro2.chr12 C 0 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 250099 4861 - 134511895 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=139153.000000 s hg19.chrUn_gl000223 117914 290 + 180455 ggtggcatgtgcctgtaatcccagctactcgggaggctgaggctcaagaatcgctcgaacccgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaataaaaaaagacttattacaaagctacaaaaatcaagacagtgtggcagtgtggtattagtgaaaca-------acaaatagatcaatagaactcaataaagagcccagaaatagacccatataaatatagtcaactgatctctgacaaaggaa s panTro2.chr12 241678 295 - 135371336 ggtggcatgtgcctgtaatcccagctactcgggaggctgaggctcaagaatcgctcgaacccgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaataaaaaaagacttattacaa-gctacaaaa-tcaagacagtgtggcagtgtggtattagtgaannnnnnnnnnacaaatagatcaatagaactcaataaagagcccagaaacagacccatataaatatagttaactgatctctgacaaaggaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 282308 290 - 136387465 ggtggcacgtgcctgtaatcccagctactcgggaggctgaggctcaagaatcgctcgaacccgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaataaaaaaagacttattataaagctacaaaaatcaagacagtgtggcagtgtggtattagtgaaaca-------acaaatagatcaatagaactcaaaaaagagcccagaaatagacccatataaatacagtcaattgatctctgacaaaggaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 254960 290 - 134511895 ggtggcacgtgcctgtaatcccagttactcaggaagctgaggcgggaggatcccttgagcccaggagttcgaggctgcaatgagctgtgactgttccactgcactccagcctgggcgacagagcgagactccgtctcaacaacaacaaaaaacacttattttaaagctacaaaaatcaagacagtgtggtagtgtggtattagtgaaaga-------acaaatagaccaacagaactcaataaagagcccagaaatagacccatataaataaagtcaactgatctctgacaaaggaa i rheMac2.chr11 I 4861 C 0 e vicPac1.scaffold_273630 650 13 - 820 I e micMur1.scaffold_4996 134338 1862 - 139067 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 283065 6376 + 667635 I e bosTau4.chr17 29996990 16289 - 76506943 I e equCab2.chr8 64174253 5168 - 94057673 I e canFam2.chr26 3221802 7198 + 42029645 I a score=53469.000000 s hg19.chrUn_gl000223 118204 40 + 180455 caaaCTCACAGGG--GGA-GAA-ATCCACTCCTAACTTTCTCTC s equCab2.chr8 64179421 41 - 94057673 CAAACTTGCAGGG--GAATAAG-CCACTCTCCAAACTTTCTCTC i equCab2.chr8 I 5168 C 0 s bosTau4.chr17 30013279 40 - 76506943 CAAGTTTGTAGGG--GAA-AAA-CCACTCTCCAAATGTTCTCTC i bosTau4.chr17 I 16289 C 0 s vicPac1.scaffold_11817 37152 40 + 44753 CAAATTTTCAGGG--AAA-AAA-GTACTCTCCAAACTTTCTCTC i vicPac1.scaffold_11817 I 36584 C 0 s speTri1.scaffold_81328 530 26 - 4816 ---------------GGG-GAA-AATCACTCTT-CCTTTCTCTC i speTri1.scaffold_81328 N 0 C 0 s cavPor3.scaffold_248 289441 24 + 667635 ---------------GGA-AGA-AATCCCACTT-TC--CCTTTC i cavPor3.scaffold_248 I 6376 C 0 s rheMac2.chr11 255250 41 - 134511895 caaaCTCACAGGG--GGG-AAATATCCACTCCTAACTTTCTCTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 282598 40 - 136387465 caaaCTCACACGG--GGA-AAA-ATCCACTCCTAACTTTCTCTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 241973 40 - 135371336 caaaCTCACAGGG--GGA-AAA-ATCCACTCCTAACTTTCTCTC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 40880 41 - 51117 CAAACTTGTGGGGGTGGG-GAG-ATCCACTCCT-CCTTTCTCTC i micMur1.scaffold_9962 I 1862 C 0 e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=147160.000000 s hg19.chrUn_gl000223 118244 98 + 180455 GTTTCTTTAGCACAACAGCCTTTCTC-CACCGTGTGTCCTTTCCTT-TCATTAACC----------------TGAGTCCTCACCTCGGTCCTCTTGAGGGTTCC----AGTTG---GTCACAC s micMur1.scaffold_9962 40921 115 - 51117 ACTTCTCTAACACTCCAGCCCTTCTT-CACCGCCTGTCCTTTCCTTGTCATTATCCCGAGTCCTCTCCTCCGTGAGTCCTCTCCTCCGTCCTCTACGGGGTTCT----AGTCG---GTCACAC i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 242013 98 - 135371336 GTTTCTTTAGCACAACAGCCTTTCTC-CACCGTGTGTCCTTTCCTT-TCATTAACC----------------TGAGTCCTCACCTCGGTCCTCTTGAGGGTTCC----AGTTG---GTCACAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 282638 98 - 136387465 GTTTCTTTAGCACAACAGCCTTTCTT-CACCGTGCGTCCTTTCCTT-TCATTAACC----------------TGAGTCCTCACCTCGGTCCTCTTGAGGGTTCC----AGTTG---GTCACAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 255291 95 - 134511895 ACTTCTTTAGCACCACAGCCTTCCT--CAC--TGTGTCCTTTCCTT-TCATTAACT----------------TGAGTCCTCACCTCGGTCCTCTTGAGGGTTCT----AGTTG---GTCACAC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 289465 89 + 667635 ACTTCTTTT-CACACCAGCCCTT----CACCACAAGT------CTTGTCATTATCC----------------TGAGTCTTCAACTTGTTCCTCTTCCGGGTTTT----AGCTG---GCCACAC i cavPor3.scaffold_248 C 0 I 4 s speTri1.scaffold_81328 556 96 - 4816 ACTTCTCTTGCACTCTGGTCCTT----CATCTCACATCCTTTCCTCGTCATTATCC----------------TGAATCCTCAACTTGGTGCTCTTCAGGGTTCT----ACTCG---GTCACAC i speTri1.scaffold_81328 C 0 C 0 s vicPac1.scaffold_11817 37192 96 + 44753 ACCTCT--TGCACCACAGCCCTTTTT-CACTGCA-GTTCTATTCTAATCACTGACC----------------TGAGTCTTC---TTGGTCCTTTTCAGGGCTCT----CTCTGTCTGTCACAC i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30013319 100 - 76506943 ACCTCTCCTGCACCCCAGCCCCTCTT-TAATGCA-G-----CCCTTGTCATTGTCC----------------TGAGGCCTCTATTTGGTCCTTTTTGGTGCTCTACTCCTATACCTATAACTC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64179462 96 - 94057673 ACCTCTCCTGCAACCCAGCCCCTCTT-CACTGCA-GCCCTCTCCTTGTCACTGCAC----------------AGAGTCctcta-ctggtcccttt-ggggctct----atttg---gtcatac i equCab2.chr8 C 0 C 0 s dasNov2.scaffold_79192 15 94 - 11235 GTTTCTTTG----CCCAGCCCCTCTTCCACAACCTGTCGTTTCCTTATAATTTTCC--------------CATAAAATCTC--------CCAGAAGAGAGTGCAAGCAATTCG---GCCACAT i dasNov2.scaffold_79192 N 0 C 0 e oryCun2.chrUn0106 705183 6935 + 1032594 I e loxAfr3.scaffold_113 127139 3400 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=150359.000000 s hg19.chrUn_gl000223 118342 113 + 180455 TCTGAGCT---TC---CACGAATACAATAAGGTGTC--TTTA------TGTATTTCCAGTTTAGACCTCCCATGT-GAGTTACAGGCTGAAATACAGGCATTGGATATT-CAACACCTGCGAAAGTCAT------- s micMur1.scaffold_9962 41036 114 - 51117 CTTGAGCT---TC---CGCAAATAT----AGGTGCC--TTTAACCTG-TATATTTGCGGTTTAGAACCCCCACCTCGAATAACTGACTCAAATATAGGCACTGCATGTC-C-GCACTTGAGAAAGACTT------- i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 242111 113 - 135371336 TCTGAGCT---TC---CACGAATACAATAAGGTGTC--TTTA------TATATTTCCAGTTTAGACCTCCCATGT-GAGTTACAGGCTGAAATACAGGCATTGGATATT-CAACACCTGCGAAAGTCAT------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 282736 113 - 136387465 TCTGAGCT---TC---CACGAATATAATAAGGTGTC--TTTA------TATATTTCCAGTTTAGACCTCCCATGT-GAGTTACAGGCTGAAATACAGGCATTGGATATT-CAACACCTGCGAAAGTCAT------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 255386 113 - 134511895 TCTGAGCT---TC---CACGAATACAGTAAGGTGTC--TTTA------GATATTTCCAGTTTAGACCTCCCATGT-GAGTTACAGGCTGAAATATAGGCATTGGATATT-CAACACCTGCGAAAGTCTC------- i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 289558 90 + 667635 TCTGGGCT---TC---TGTGAATAT-ATAAGTTCCT--TCAA------CATGTATATACTGTACTGTATCCA-------ATTTACACT-ACTCACTGCAACTACGGACT-CAAA---------------------- i cavPor3.scaffold_248 I 4 C 0 s speTri1.scaffold_81328 652 111 - 4816 TCTGAGCT---TC---TTGGAATAA-ATGTGTCCCCAGTCTG------TGTGTTTCCAGTTTGGTCTGCCCACGG-GAGCTATAGATT-ACGCACAGGCACTGCATACT-CAACATCT--GAGAGTCTT------- i speTri1.scaffold_81328 C 0 C 0 s vicPac1.scaffold_11817 37288 112 + 44753 CCTGGGCT---TC---CACTAACAT----AGGTGCC--TTTAATCTG-TATATTT-TAGTTGAAAAGTCCCACCC-GAGCTACATACTCAACTACAGGCACTGCATATT-TAACACCTACAA-AGCCAC------- i vicPac1.scaffold_11817 C 0 I 6 s bosTau4.chr17 30013419 111 - 76506943 CTATTGTT---AAAGGCACTAACAT----AGGTGCC--TTTAATCGG-TACATGT-TAGTTGAAAACTCCCACCT-GAGCTACAGACTCAACTGTAGGCACCACATATTAAAATACCTACAAA------------- i bosTau4.chr17 C 0 I 399 s equCab2.chr8 64179558 113 - 94057673 cctgacct---tc---cactaacat----aggtgcc--tttaatctg-tatgtttccagttgagaactcccacct-gagtcccagactcagctacaggcactgcatata-caacacctacaA-AGCCGC------- i equCab2.chr8 C 0 I 6 s loxAfr3.scaffold_113 130539 124 - 3408981 tcagggcttccTC---CAATAACAT----AGGTACC--TTTAGTAAGCATCACTTCCAATTTAGACCTCTGACCT-GAGCTACAAACTCAAATACAGGCACTGCCAATT-CCACACCTACAA-TGCTGCACTCAGT i loxAfr3.scaffold_113 I 3400 C 0 s dasNov2.scaffold_79192 109 100 - 11235 GCTGAGCT---TC---CACTAATAT----AGGTCTC--TTTAA-----ACTCCTTCC--------------ACCT-GAGTTATAAACTTAAATATAGACATTACCAATT-TTACATCTACAA-AGCTGCACTT--T i dasNov2.scaffold_79192 C 0 C 0 e oryCun2.chrUn0106 705183 6935 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=62711.000000 s hg19.chrUn_gl000223 118455 36 + 180455 TCCCAGGGTCCCTCTTCCAATAGCATTCCTAGTCTC s micMur1.scaffold_9962 41150 36 - 51117 TCCCAGAATACCTCTTCTAATAGCGTTCCTAGTCTC i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 242224 36 - 135371336 TCCCAGGGTCCCTCTTCCAATAGCATTCCTAGTCTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 282849 36 - 136387465 TCCCAGGGTCCCTCTTTCAATAGCATTCCTAGTCTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 255499 36 - 134511895 TCCCAGGGTCCCTCTTCTAACAGCTTTCCTAGTCTC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 289648 21 + 667635 ---------------TATAACAGTATTCCTGGCCTG i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_81328 763 36 - 4816 TCTGGGGTTATCTCTTCTAACAGTGATCTTTGTCTC i speTri1.scaffold_81328 C 0 C 0 s vicPac1.scaffold_11817 37406 15 + 44753 TCCCTGGATACC---------------------GGC i vicPac1.scaffold_11817 I 6 C 0 s bosTau4.chr17 30013929 35 - 76506943 TCCCTGGATACTTCTTCCAACAGTGTTCTCAA-GAC i bosTau4.chr17 I 399 C 0 s equCab2.chr8 64179677 33 - 94057673 -TCCTGGTTCCT-CTTCTCATAGCGTTCCCAA-GAC i equCab2.chr8 I 6 C 0 s loxAfr3.scaffold_113 130663 36 - 3408981 CCCCTGGACACCTCTCCTAAAAATGCTCCTAGTCTC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_79192 209 36 - 11235 TCCCTAGATAACTCTCCTAACAGTAATCCCAGTATC i dasNov2.scaffold_79192 C 0 I 158 e oryCun2.chrUn0106 705183 6935 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=24789.000000 s hg19.chrUn_gl000223 118491 109 + 180455 CGGCTGTATAGCTCAATGGTAGAGCACCACATCCGGCAACGTCGTCAACA-------CCAC-TCAC-CGAGGGCAAAGGATTTGGCAATCAAATCACTTGTAAAGACTCCCCTCTGGT s micMur1.scaffold_9962 41186 71 - 51117 AAGAAAT------------------------------------GTTACCA-------CCAC-CTAC-CAAGCGCAACGGGTTAGGCAATCAA-TCA-TTGCGAATTATCCCCTCTGGT i micMur1.scaffold_9962 C 0 C 0 s panTro2.chr12 242260 109 - 135371336 CGGCTGTATAGCTCAATGGTAGAGCACCACATCCGGCAACGTCGTCAACA-------CCAC-TCAC-CGAGGGCAAAGGATTTGGCAATCAAATCACTTGTAAAGACTCCCCTCTGGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 282885 109 - 136387465 CGGCTGTATAGCTCAGTGGTAGAGCACCACATCCGGCAACGTCGTCACCA-------CCAC-TCAC-CGAGGGCAAAGGATTTGGCAATCAAATCACTTGTAAAGTCTCCCCTCTGGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 255535 109 - 134511895 CAGCTGTATAGCTCAGTGGCAGAGCACAACATCCGGCAACGTCGTCGCCA-------CCAC-TCAC-CGAGTGCAACGGATGTGGCAATCAAGTCCCTTGTAAAGTCTCCCCTCTGGT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 289669 71 + 667635 AGGACAC------------------------------------ATCACCA-------CCAT-CCTCTGGAGTGCAATGGGTTCAGCAATCGCATCACT-GTGAAATCTTCCCTCTC-- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_81328 799 64 - 4816 AGGAAAT------------------------------------GCTATAA-------CCAC-CCGC-GTAGTGCAACAGGTCCAGCAATCCAATCACT-----CATCTTTACTC---- i speTri1.scaffold_81328 C 0 C 0 s vicPac1.scaffold_11817 37421 61 + 44753 TGGGAAC------------------------------------ATCGCCAGTGTGTGCCACAGCTC---------AGATATGTAGCGTTCA------CTGTGAAGTCTCCAT------ i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30013964 65 - 76506943 CGGACAC------------------------------------ATCACCGGTGTAC-CAACAGCTC---------AGGATTTCAGCATTCG------CTGTTAAGTCTCCCT-CTGGT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64179710 56 - 94057673 CGGAAAT------------------------------------ATCACCA-------CCAC-GTGC---------AGG---TCAGCAATCG------CCGTAAGGTCTCCCCTCTCAC i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 130699 72 - 3408981 AGGAAAT------------------------------------GTCACCA-------CCAC-CCAC-TGTCTCCCCCTGGTT-AGAAATCATCAACACTGGGAACTCTCCCCTCTCCC i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_79192 245 158 - 11235 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=39715.000000 s hg19.chrUn_gl000223 118600 88 + 180455 TCACTCCATCAATAATTCA-TAAAGTCCCGATGATCCACTGGCCCGCCCC-----------------------------TTACCTT----------------TC---GGACTCTCGAGCTCCGCTCCTAGCCTTTTC s rheMac2.chr11 255644 88 - 134511895 TCACTCCGTCAATCATTCA-TAAAGTCCAGATGATCCCCTGGCCCGCCCC-----------------------------TTACCTC----------------TT---GGACTCTCGAGCTCCGCTCCTAGCCTTTTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 282994 89 - 136387465 TCACTCCATCAATAATTCA-TAAAGTCCCAATGATCCACTGGCCCGCCCC-----------------------------TTACCTC----------------TT--GGGACTCTCGAACTCCGCATCTAGCCTTTTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 242369 88 - 135371336 TCACTCCATCAATAATTCA-TAAAGTCCCGATGATCCACTGGCCCGCCCC-----------------------------TTACCTC----------------TC---GGACTCTCGAGCTCCGCTCCTAGCCTTTTC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 41257 91 - 51117 -----------TCACTTCA-TCCAG-----GTGATCCACTGGTCCGGTCC-----------------------------TTCCCCCCAAGATCGCTGCTTCCTCCTTGGACCCTCGAGCTCCTCTCCTAGCTTCCTC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 11822 95 - 13118 TCTCCCTCTCATCACTTCA-TGCA------GTGATGCACT-GCGCAGCCC-----------------------------TCCCCAC--AGATCTCGCCTTTCTC--TGGACCTTCAAG-TCCTCTCCTAGCTTCTTC i otoGar1.scaffold_60607.1-13118 N 0 C 0 s speTri1.scaffold_81328 863 106 - 4816 ------CAACAATCAC-----AAAGTGCAAAAGATCCTCTATCCCCTTTCTCTGTTAAAAAAAAAAAAAAACTGCGTCTTTCTCTT----------------CT---GCACTTTCCAGCTAATCTCCTGTCCTCCT- i speTri1.scaffold_81328 C 0 C 0 s cavPor3.scaffold_248 289740 98 + 667635 TCCAGTCATCAATCATTCA-AAAAGCGCCAGTGATTCATTACCCTCACCC------------------AGGTCGCTCCTTTATCAT----------------TT---GCACCCTTCAGCTCCTCTCTTCTCTCCTT- i cavPor3.scaffold_248 C 0 C 0 s vicPac1.scaffold_11817 37482 85 + 44753 ---------CAATCACCTGCCATAGTCCAGGTGGTCTACTGGTCCTCTCT-----------TCTTACAAAACTGCTCCTTCCTGCT----------------TT---GCACCCTCAAATTCCTC------------- i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014029 93 - 76506943 TCAGTCCTCCAACCACCTG-CACGGTCCAGAGGGTCCACTGGCTCTCTCC-----------TCTCACAACACTGCTCCTTCCCGCT----------------TT---GAATCCTTAAACTCCTT------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64179766 93 - 94057673 TCACTCTATTAATCAGGTG-CAGAGTCCACGTGGTCCACTGGCCCTCCTT-----------TCCTCCAAAACTGCTCCTTCCTGCT----------------TT---GCACCCTCGACCTCCTC------------- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 130771 76 - 3408981 -CCACTTATCAATCACTTA-GACAGTCAAGGCTATTCACAGGCCCACTCC-----------------------------TCCTCCA----------------AT----CACTCCTG-CCTCCATTCCC--------- i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_79192 245 158 - 11235 I e oryCun2.chrUn0106 705183 6935 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=231120.000000 s hg19.chrUn_gl000223 118688 155 + 180455 TCCCTATTCATTCACCTGTAATTGCGTCCATAGTTCACTAGA----CTACC--CTCT--CCA--CCAAACCAAAGCTCCTCT-AAAATTAGGAACATACATAATTTATCTCTGCATTGCCAGCACCAGCCTTAGA-GTCCAGCA------------GACAAAAGGA-----CACTCCATAAACA------------ s rheMac2.chr11 255732 155 - 134511895 TCCCTACTCATACACCTGTAATTGTGTCCACAGTTCACTAGA----CTACC--CTCC--CCA--CCAAACCAAAGCTCCTCT-AAAATCAGGAACATACATAACTTATCTCTGCATTGCCAGCACCAGCTCTAGA-GTTCAGCA------------CACAAAAAGA-----CACTCCATAAACA------------ i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 283083 154 - 136387465 TCCCTATTCATTCACCTGTAATTGTGTCCATAGTTCACTAGA----CTACC--CTCC--CCA--CCAAACCAAAGCTCCTCTAAAAATTAGGAACATACATAATT--TCTCTGCATTGCCAGCACCAGCCTTAGA-GTCCAGCA------------GACAAAAAGA-----CACTCCATAAACA------------ i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 242457 155 - 135371336 TCCCTATTCATTCACCTGTAATTGCGTCCATAGTTCACTAGA----CTACC--CTCC--CCA--CCAAACCAAAGCTCCTCT-AAAATTAGGAACTTACATAATTTATCTCTGCATTGCCAGCCCCAGCCTTAGA-GTCCAGCA------------GACAAAAAGA-----CACTCCATAAACA------------ i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 41348 152 - 51117 TCCCTACCTAAGCACCTGTAATTGTG-CCACGGTTCACTTGA----TTACT--CTCCTTCCATGCCAGACTAAAGATCCCCT-TAAACAAGTGACATACACAATTTATCT-----TTGCCAGCACCAGCCCCAGT-GTCCAACA------------TACAAAAATA-----CGCTCAGTAAAT------------- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 11917 147 - 13118 TCCTTCCCGTTGCACCTGTAATTGCACCCATAGTTCACTTAATTACTTACT--CTCCATCCAGGCCAGACCAAAGCTCCTCT-AAAACAAGAGACATACACAATTTATCC-----TTGCCAGCACAA-----AGG-GTCCAGCA------------CACAAAGA-----------CAGTAAATA------------ i otoGar1.scaffold_60607.1-13118 C 0 C 0 s cavPor3.scaffold_248 289838 121 + 667635 TCCCTGTCCATTCACCTGTTCTTGTGCGCAGT-TTTACTCAA----TTACG--CTTC--CTC--TCAGACCAAAGCTTTTCT-AAAACAAAGAACACA--TCATTTGTCTTTCCATTGTTAGCATCAGCCTAAAG------------------------------------------------------------- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_81328 969 124 - 4816 TCCTCA---------CTGTTC---------------ACTTGA----TTTCC--CTTC--GCA--TCCGACCACAGATTCCCT-GAAACAAGAAACGTA----ATTTACCTTCGCACTGCAAGCACCAACCTCAGG----GAGTG------------AACACCAAGT-----CACTTAATAAATA------------ i speTri1.scaffold_81328 C 0 C 0 s oryCun2.chrUn0106 712118 148 + 1032594 TCCCTACCCACTCACCTGGAACTGTGCACACTGTTCATTTGA----TTACC--CTTC--CCA--CAAGACCAGAGCTCCTTA-AAAACAA-GAACGTA----CAGAGTGAACGCACAACCAGCAT---CCCAAGGCCCCCGCCA------------TACAACCGGA-----CCCGGAATAAGCA------------ i oryCun2.chrUn0106 I 6935 C 0 s vicPac1.scaffold_11817 37567 144 + 44753 TCCCCACCCATTCACCTGCTGTCCTGCCCAAT--------GA----CTACC--CTCC--TCC--CCAGACTACAGTGCCTCC-AAAACAAGAAAGGTACCTC--TTTTCTCTGCACTGCCAAC-TCAGCCTCGGG-GTCCCGCA------------CACAAAAAGA-----TACTCAGTATATA------------ i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014122 127 - 76506943 CCCC-------------GCCATCCTGCCCAAC--------GA----CT-----CTGT--GCG--CCAGACCACAGCTCCTCT-AAAACAAGAAACGTACGTG--ATTTCTTTGCACTGCCAGCATCAATCTCTGG-ATCCAGCT------------CAC--GAGGG-----TACTCAGTATACA------------ i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64179859 124 - 94057673 TCCC-------------AGCCTCCTCTCC-----------------CTATCCATTCA--CCG--CCAGGCCACAGGTCCTCT-AAAACAAGAAGCATAT-----TTATCTTTGCACTGCCAGCACCAGCTCCACC-GTCCAGCA------------CAC--AAAGA-----CACTCAGCAAATG------------ i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 130847 183 - 3408981 TACCCATTCATTCACCTGTAACTGTGTTCACTGTGTCCTTGA----TT-CT--CATC--CCA--CCCAACCACAGCTCCACA-AAAACAAAGAAAGTACATAACTCATCTTTGCCTGACTAACACCCACCCCAAG-GTCCAGCATGCGCACTCACGCACAAAAACACACACCACTTGGTAAATGTACATGTGAACA i loxAfr3.scaffold_113 C 0 I 151 e dasNov2.scaffold_79192 245 158 - 11235 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=-4255.000000 s hg19.chrUn_gl000223 118843 31 + 180455 AGCATTTGGCC----A---------------------AAC----G-------AAAAAGGAGGAACTG s rheMac2.chr11 255887 31 - 134511895 AGCATTTGGCC----A---------------------AAC----G-------AAAGAGGAGGAACTG i rheMac2.chr11 C 0 M 451 s ponAbe2.chr12 283237 31 - 136387465 AGCATTTGGCC----A---------------------AAC----G-------AAAAAGGAGGAACTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 242612 31 - 135371336 AGCATTTGGCC----A---------------------AAT----G-------AAAAAGGAGGAACTG i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 41500 33 - 51117 AGCATTTGGACAAAGA---------------------AAC----A-------AAAAAGGAAGAGG-- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12064 29 - 13118 AGCCTTTGGAC----A---------------------AAC----G-------AAAAACGAGAAAG-- i otoGar1.scaffold_60607.1-13118 C 0 C 0 s cavPor3.scaffold_248 289959 19 + 667635 ---ACCCGCAC----A---------------------CAC----------------AGAAAGG---- i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_81328 1093 28 - 4816 AGCACTTGCAC----A---------------------AACC---A-------AAGAAGAAAGT---- i speTri1.scaffold_81328 C 0 C 0 s oryCun2.chrUn0106 712266 31 + 1032594 TCTTCCGGAAT----A---------------------AGCACTGA-------AGGAAAGACGG---- i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 37711 33 + 44753 GGTATTTGAAC----A---------------------AAT----GAATGAACAAAAAGGAGG----- i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014249 32 - 76506943 AACATCTGAAC----A---------------------AGC----TAATGAACAAAAAGGA-G----- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64179983 31 - 94057673 AGCTTTCG-AC----A---------------------AAC----GAATGAG-AAAGAGGAGG----- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 131181 50 - 3408981 agcacttaacc----actacaccaccagggtttccTTAAT----G-------AACGAAGAGGTGG-- i loxAfr3.scaffold_113 I 151 C 0 e dasNov2.scaffold_79192 245 158 - 11235 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=37429.000000 s hg19.chrUn_gl000223 118874 150 + 180455 ATCATT----TCTCCAGCTAAGTTCTAAGGGTCTCCATAAG---ACAACTT--------TGTG----TAGAAAACATGAAATGATGGAG------------------------G---------ATCCTC-AGACTTCAGGGCCCGCAGCTGGC--CATGAAGTGCAGTATAACTGCCC---------------GTCACAGAATACCACAG------GCACGTTTCT s ponAbe2.chr12 283268 150 - 136387465 ATCATT----TCTCCAACGAAGTTCTAAGGGTCTGCATAAG---ACAACTT--------TGTG----TAGAAAACATGAAATGATGGAG------------------------G---------ATCCTC-AGATTTCAGGGCCCGCAGCTGGC--CACCAAGTGCAGTATAACTGCCC---------------GTCACAGAATACCACAG------GCACGTTTCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 242643 150 - 135371336 ATCATT----TCTCCAACTAAGTCCTAAGGGTCTGCATAAG---ACAACTT--------CGTG----TAGAAAACATGAAATGATGGAG------------------------G---------ATCCTC-AGACTTCAGGGCCCGCAGCTGGC--CATGAAATGCAGTATAACTGCCC---------------GTCACAGAATACCACAG------GCACGTTTCT i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 41533 185 - 51117 GTCTTT----GCCTTAGTGAAGTCCTAATAGTCTGTGTAAAAAAACAACTG--------TGCGTACAAACAAAACATGAAATGATGGAA------GGTCATTTTCTTAACAAGG---------ACTCTCAAGACTTCAGGGCTCTCAGGTGGC--AATGAAGTGCAGTGCAACTGTCAAAGGAGAGGACACTGGACACAAAATACCAGAG------------ACCG i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12093 194 - 13118 GTATATATGAACCTCAATGAA---CTAACAGACTGCATAAGGAAACAACTC--------TGT-----CAGAAAACACAAAATGATGGAAAAGCATGAGCATTACCTTAAAAAGG---------ACTCTCAAAAGTTCAGGGTTCTCAGCTGGC--AATAAAGTACAGGGTAACTACTGAAGGACAAGATACTGGACTCAAAATACCAGAA-----GGAACGTATCT i otoGar1.scaffold_60607.1-13118 C 0 C 0 s cavPor3.scaffold_248 289978 85 + 667635 --CATT--------------------------------------------------------------------------------AAG------------------------G---------AACCTC-AGAATTCTAGACACACGGCGGTT--AACTA-----AGTATAAA-GCTATA------------GGACACAAAATATCAAAA-----CGAACATTGCT i cavPor3.scaffold_248 C 0 I 6 s speTri1.scaffold_81328 1121 155 - 4816 --AATTTC--CCCCCATAGAACTCTTATGGATCTGCATAAAAAGACAAA------------------CGAAGATCTTTCCTTAAACAAG------------------------G---------AATCTC-AGAAATCTGGGCCCACCGCTGGC--AACGA-----AGGGTGACTGCCAAAG---ACGACGCCGGACGCAAAATACCATAA-----GGAGCGCTTCT i speTri1.scaffold_81328 C 0 I 38 s oryCun2.chrUn0106 712297 112 + 1032594 --CACCCT--CCCTCAC--------------------------GAGGGC------------------CGAAGGACCAGCCAAAGCCGAG------------------------G---------A------CGAAACGGCGGCGTATCATTTCCCGAACAA-----AGCGTAAC-----CA------------GGGCATCGAACACCCGAA-----GCACCCTTGCT i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 37744 198 + 44753 GTAATT----TCCTTAATGAGGCCCTAAAGGTCCGGACATGAAGACAACTCAGTACGTGTGTG----TGAAAAAGGCGAAATGATAGAG------GATAATTTCCTTCACAAGG---------ACCCTC-AGAGTTCAGGGTCCGCGGTTGGC--AAAACAGC--AGTGTATCTGCCGGAGGAGAGGGCACCGGACACACCAGGCCAGGAGACAGGGAACCTTTCT i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014281 206 - 76506943 ATAATT----TCCCTGCTGATGCCCTGAA-ATCTGGACGCGAAGACAACTCTATACTTGTGTG----TGGAAAACCTGAAACGATAGAG------GATCATTTCCTTCACAAGGGCCCTCACTGCCCTC-AGAATTCAGGGTCCGCTGTAGAC--AACAAAGC--AGAGTAACTGCCCACGGACAGGGCACCGGACACCAAGTGCCAGAAGACAAGGAACGTTTCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64180014 199 - 94057673 TTACTT----TCCCTAACGAGGTTCTAAAGGTCTGGATATGAAGACAAGTCAATACTCGTGTG----CGAAAAATCCGAGATGAGAGAG------CGTCAGTTCCCTAACAAGGGCCCTCATTTCTCTC-GGAGCTCAGAGTCCGCAGC-GGC--AATAAATC--A---TTAGTGCCGAAGGAGAGGGCCCTGGACAC---ATGCCGGAAGACTGGAAGC-TTTCT i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 131231 198 - 3408981 GTGATT----TTCCTAATGAGGCTCCAAGGATCCGGATCAGTAAATG------------TGTA----CGCAAAACGCGAAGTGGAGGAGGGATGGGGTCATTCCCTTAACAAGAAGCCTCATTCCCCTC-ACAGTTCAAAGTCCACAACGGGC--AGTAA-----AGTCTAACTGTTGAACGACAGAGCCCCATGCAGAAAATCCCAAAAGACAAGACGCATTTCT i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_79192 245 158 - 11235 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 255918 451 - 134511895 M e canFam2.chr26 3221802 7198 + 42029645 I a score=-47582.000000 s hg19.chrUn_gl000223 119024 71 + 180455 GCAGGGCCAGAGCTTGGGCGAGCTTCAGAGGCGCTTTGGTTTGGTGGG------GAGGGTAGTCTAGTAAACTACGC s ponAbe2.chr12 283418 71 - 136387465 GCAGGACCAGAGCTTAGGTGAGCTTCGGAGGAGCTTTGGTTTGGTGGG------GAGGGTAGTCTAGTGAACTACGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 242793 71 - 135371336 GCAGGACCAGAGCTTGGGCGAGCTTCAGAGGAGCTTTGGTTTGGTGGG------GAGGGAAGTCTAGTAAACTACGC i panTro2.chr12 C 0 C 0 s micMur1.scaffold_9962 41718 29 - 51117 AGGGG-----------------------------------GCGGGAGG------GGGGCC--GCTGAGGAAC----- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12287 40 - 13118 GGAGGCTCACA--------------------------GACCCAGGGTG------GGGGCCAGGATGGGGAAC----- i otoGar1.scaffold_60607.1-13118 C 0 C 0 s cavPor3.scaffold_248 290069 32 + 667635 TGGGGGTCAGA-----------------------------TCTGGACA------GAGACTAG---AGGCA------- i cavPor3.scaffold_248 I 6 C 0 s oryCun2.chrUn0106 712409 22 + 1032594 GGAGGCCCGGA-----------------------------CACGGGCA------GGG-------------------- i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 37942 39 + 44753 GGAGATCCGGA-----------------------------GACGGGGAGCAGTAGGGGGCGG--CGGGGG------- i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014487 24 - 76506943 GGAGACTCAG--------------------------------------------GGGGATGG--CGGGGA------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64180213 29 - 94057673 GGAGATCCAGA-----------------------------GACGGGGA------GGGGGC------AGGA------- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 131429 24 - 3408981 GGAGGCAGAGA-----------------------------GACGGGGC------AGGGG------------------ i loxAfr3.scaffold_113 C 0 C 0 e dasNov2.scaffold_79192 245 158 - 11235 I e speTri1.scaffold_81328 1276 38 - 4816 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 255918 451 - 134511895 M e canFam2.chr26 3221802 7198 + 42029645 I a score=41022.000000 s hg19.chrUn_gl000223 119095 54 + 180455 ACACAATTACAGCTGAATGT-GAGTTCAGTTCCC-GGA-G-TAACCCTGAAGAGATTA s rheMac2.chr11 256377 54 - 134511895 ACACAATTACAGGTG-ACGT-GAATTCAGTTCCCGGGA-G-TAACCCTGCAGAGATCA i rheMac2.chr11 M 451 C 0 s ponAbe2.chr12 283489 54 - 136387465 ACACAATTACAGGTGAACGT-GAGTTCAGTTCCC-GGA-G-TAACCCCGAAGAGATTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 242864 54 - 135371336 ACACAATTACAGCTGAACGT-GAGTTCAGTTCCC-GGA-G-TAACCCTGAAGAGATTA i panTro2.chr12 C 0 C 0 s dasNov2.scaffold_79192 403 37 - 11235 --------------GAGCAC-GAGATCGGGCTCT-GGATG-TGACCTTGTAGAG---- i dasNov2.scaffold_79192 I 158 C 0 s loxAfr3.scaffold_113 131453 41 - 3408981 --------------GCACGT-GAGTTCAGGACCT-GGCTG-TGACAGTGAAGAGACGA i loxAfr3.scaffold_113 C 0 C 0 s equCab2.chr8 64180242 34 - 94057673 --------------ACACGC-GAGTCCAGGCCCT-GGATG-TCGCCGTCCC------- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30014511 40 - 76506943 --------------ATATGT-GAGTTCAGGCCCT--GGTG-TGACCGTGAAGGGATGA i bosTau4.chr17 C 0 C 0 s vicPac1.scaffold_11817 37981 42 + 44753 --------------ACACGT-GAGCTCAAGCCCT-GGGTGTTAACCATGAAGGGGTGA i vicPac1.scaffold_11817 C 0 C 0 s tarSyr1.scaffold_255302 2525 39 + 3490 ----------------ACGT-GGGTTCCGGTCCC-GAACG-GAGCCCTGAAGAGACGA i tarSyr1.scaffold_255302 N 0 C 0 s micMur1.scaffold_9962 41747 40 - 51117 ----------------ACGTCGAGTTCAGGTTCA-GGATG-TGACCCTGAAGAGATGA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12327 39 - 13118 ----------------ATGT-GAGTTCAGGTCCT-GGATG-TGATCCTGAAGAGATGA i otoGar1.scaffold_60607.1-13118 C 0 C 0 s cavPor3.scaffold_248 290101 31 + 667635 -------------------------TCAGGTCCA-GGATG-TGACCGTGAAGGGATAA i cavPor3.scaffold_248 C 0 C 0 s speTri1.scaffold_81328 1314 22 - 4816 --------------------------------CT-GTATG-CGACAGC--AGGGATGA i speTri1.scaffold_81328 I 38 C 0 s oryCun2.chrUn0106 712431 20 + 1032594 --------------------------CCAGCCCT-GGGTG-GGACCGG---------- i oryCun2.chrUn0106 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3221802 7198 + 42029645 I a score=59657.000000 s hg19.chrUn_gl000223 119149 48 + 180455 ACGTGGCCACCCTCAGTATCCAGTCGAA--TTTTAAAC----ACGGAA-AGTCTC s panTro2.chr12 242918 48 - 135371336 ACGTGGCCACCCTCAGTATCCAGACAAA--TTTTAAAC----ACGGAA-AGTCTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 283543 48 - 136387465 ACGTGGCCACCCTCAGTATCCAGTCGAC--TTTTAAAC----AAAGAA-AGTCTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 256431 48 - 134511895 ACGTGGCCACCCTCAGTATCCAGTCGAC--TTTTAAAC----ACGGAA-AGTCTC i rheMac2.chr11 C 0 C 0 s oryCun2.chrUn0106 712451 21 + 1032594 -------------------CCACCTCGG--CGTC------------GA-AACCCC i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_81328 1336 37 - 4816 ACGTG--------------CCAGGTCGC--TTTTCAAAGGC-ACGAGA-AAGCCC i speTri1.scaffold_81328 C 0 C 0 s cavPor3.scaffold_248 290132 51 + 667635 ACATGGCCACCCACGGTTTCCAGTAAAC--TTTCGAAAAGC-GAGAGA-AAACCC i cavPor3.scaffold_248 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12366 52 - 13118 ACATGCTGACTCTCAGTGTCCTGTCAGC--TTTTTAAAAGTTAGAAAA-AGTGCC i otoGar1.scaffold_60607.1-13118 C 0 C 0 s micMur1.scaffold_9962 41787 50 - 51117 ACATGGCCACTCT--GTGCCGTGTTAGC--TTTTAAAAAGTGAGAGAA-AGTCCC i micMur1.scaffold_9962 C 0 C 0 s tarSyr1.scaffold_255302 2564 51 + 3490 ACGTGGCGA-CCTCGGTGTCAAACCGGC--TTTTAAAAGGTGAGGAAG-CGTCTC i tarSyr1.scaffold_255302 C 0 C 0 s vicPac1.scaffold_11817 38023 49 + 44753 ACATGTCCACCCTCAGTGCCGCAACAGT--TGTCACAAG---GGAGAA-AGTTCC i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014551 49 - 76506943 AGAGGTCCGCCCTCACGGCCGAGTCAGC--TTTCTTAAG---TGAAAA-AGTCCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64180276 45 - 94057673 TCGGTGCCACCCCAAGCGCCGAGTCCGC--TTTGAAAG-------GGA-CACTCC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3229000 49 + 42029645 ACGTAACCGTCCTCAGTGCCCAGGCAGC--TTCTAAAGA---CGAGGA-GGTCCC i canFam2.chr26 I 7198 C 0 s loxAfr3.scaffold_113 131494 48 - 3408981 ATGTGTTCACCCTCTGTTCCCAGTCAGC--TTTTCAAA----ATTTTA-AGTCCC i loxAfr3.scaffold_113 C 0 C 0 s dasNov2.scaffold_79192 440 49 - 11235 ATGTGCTCATCCTCGGCACCTTGTTAACTTTTTTTAAG----ATGCCAGAGTC-- i dasNov2.scaffold_79192 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=273581.000000 s hg19.chrUn_gl000223 119197 53 + 180455 TACTTACCCAGCACGAAGCT--GTCCGGAAACTGGTGGCCATCCCC----AC-------GCCCACG--- s panTro2.chr12 242966 53 - 135371336 TACTTACCCAGCACGAAGCT--GTCCGGAAACTGGTGGCCATCCCC----AC-------GCCCACG--- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 283591 53 - 136387465 TACATACCCAGCACGAAGCT--GTCCGGAAACTGGTGGCCATCCCC----AC-------GCCCACG--- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 256479 53 - 134511895 TACTTACCCAGCACGAAGCT--GTCCGGAAACTGGTGGCCATCCCC----AC-------GCCCACG--- i rheMac2.chr11 C 0 C 0 s oryCun2.chrUn0106 712472 50 + 1032594 CACTTACCCAATACGAAGCC--GTCCGTAACCCGGAGGCCATCCCCTACAGC----------------- i oryCun2.chrUn0106 C 0 C 0 s speTri1.scaffold_81328 1373 53 - 4816 TGCTTACCCAGTACGGCGCC--GTCTGGACCCTGGCGGCCATCCCC----ACGGGCGCG---------- i speTri1.scaffold_81328 C 0 N 0 s cavPor3.scaffold_248 290183 46 + 667635 TACTTACCCAGCACGCAGCG--GTGTGGAAGCTGACAGCCATCGCT----GC----------------- i cavPor3.scaffold_248 C 0 I 21195 s otoGar1.scaffold_60607.1-13118 12418 52 - 13118 TAGTTACCCAACACGAAGCT--GTCCCGAACCTGCTGGCCATC-CC----GC-------GCCGGGT--- i otoGar1.scaffold_60607.1-13118 C 0 C 0 s micMur1.scaffold_9962 41837 52 - 51117 TACTTACCCAACACGAAGCT--GTCCCGAACCTACTCGCCATC-CC----GT-------GCCGGGT--- i micMur1.scaffold_9962 C 0 C 0 s tarSyr1.scaffold_255302 2615 55 + 3490 TACTTACCCAGCACAAAGCTGGGTCCGGAAATGGGTGGCCATCGCC----GA-------TCCCGCT--- i tarSyr1.scaffold_255302 C 0 C 0 s vicPac1.scaffold_11817 38072 49 + 44753 TACTTACCCAACCAGAAGCT--GTTCGGAACCTGGTGGCCATC-CC----GC-------GCCG------ i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014600 49 - 76506943 TACTTACCGAACACGAAGCT--GTAGGGAACCTGGTGGCCATC-CC----GG-------GCTG------ i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64180321 49 - 94057673 CACTCACCCAGCACGAAGCT--GTCCGGGGCCCGGCGGCCATC-CC----GC-------GCTG------ i equCab2.chr8 C 0 C 0 s canFam2.chr26 3229049 49 + 42029645 TACTTACCCAACACGAAGCC--TTGCGGAACCTGCCAGCCATC-CC----GC-------GCTG------ i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 131542 52 - 3408981 TACTTACCCGACACGAAGAC--GTCCGGAACCTGGTGGCCATCCC-----GC-------GCTC---AGC i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_136297 3828 53 - 5039 TACTCACCCAACACGAAGAA--GCCTGGAACCTGGTGGCCATCCCA----GC-------ATTC---AGC i proCap1.scaffold_136297 N 0 C 0 s dasNov2.scaffold_79192 489 52 - 11235 TACTTACCCACCACGAAGCT--GTCCGGAGCCTGGCAGCCATCCCC----GC-------GTTC---A-T i dasNov2.scaffold_79192 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=26569.000000 s hg19.chrUn_gl000223 119250 324 + 180455 --TTCGCG--CGCTGCCTGCGG--GGGC--AGGA-----CCCGCGGGC--TGCG----GAGAGA-CCGTGAGGGATGCGTCCG-CCC----------------------------------------GAAGACAGGTGCG--GGACCAGGGCCCC--AGGCTCCTGACCGTCCCGGGGC-------CGAG-----TCGTTGGCAGGGACGCCGGCTCCTCAGCTCTCG--CCCAACACAGACCGCGCGTGACTAGACAACCTCCCGGTCTGGGTAC----------CAGGAGTCGCACGGATGGAT----TTGTGCCTTTCCGTGGCCCTGACTCGG-GAGAGCAGGAGGCTGATCTGGCCCCGTCCA---CGCCCCGGACCGACGG----AAGTGTTTAGCTGGTCA--AGTCTCTGGTCTGCCCA s rheMac2.chr11 256532 323 - 134511895 --TTCGTG--CGCTGCCTA-GG--GGGC--AGGA-----CCCGCGGGC--TGCG----GAGAGA-CCGCGAGGGATGCGTCCG-CAC----------------------------------------GAAGACAGGTGCG--GGTCCTGGGCCCC--AGGCACCTGACCGTCCCGGGGC-------TGAG-----TCGCTCGCAGGGACGCCGGCTCCTCAGCTCTCG--CCCAACGCGGAGCGCGCGTGACTAGACGGCCTCCCGGTCTGGGTAC----------CAGGAGTCGCACCGATGGAT----TTGTGCCGTTCAGCAGCCCTGACTCGG-GAGAGCAGGCGGCTAGCCTGGCTCCGTCCA---CGCCCCGAACCGACGG----AGGTGTTTAGCTGGTCA--AGTCCCTGGTCTGCCCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 283644 324 - 136387465 --TTCGCG--CGCTGCCTGCGG--GGGC--GGGA-----CCCGCGGGC--TGCG----GAGAGA-CCGTGAGGGATGCGTCCG-CCC----------------------------------------GAAGACAGGTGCG--GGACCAGGACCCC--AGGCTCCTGACCGTCCCGGGGC-------TGAG-----TCGTTGGCAGAGACGCCGGCTCCTCAGCTCTCA--CCCAACACGGACCGCGGGTGACTAGACGACCTCCCGGTCTGGGTAC----------CAGGAGTCGCACGGATGGAT----TTGTGCCTTTCCGTGGCCCTGACTCGG-GAGAGCAGGAGGCTGATCTGGCTCCGTCCA---CGCCCCGGACCGACGG----AAGTGTTTAGCTGGTCA--AGTCCCTGGTCTGCCCA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 243019 320 - 135371336 --TTCGCG--CGCTGCCTGCGG--GGGC--AGGA-----CCCGCGGGC--CGCG----GAGAGA-CCGTGAGGGATGCGTCCG-CCC----------------------------------------GAAGACAGGTGCG--GGACCAGGGCCCC--AGGCTCCTGACCGTCCCGGGGC-------TGAG-----TCGTTGGCAGGGACGCCGGCTCCTCAGCTCTCG--CCCAACACGGACCGCGCGTGACTAGACAACCTCCCGGTCTGGGTAC----------CAGGAGTCGCACGGATGGAT----TTGTGCCTTTCCGTGGCCCTGACTCGG-GAGAGCAGGAGGCTGATCTGGCCCCGTCCA---C-CCCCGGACCGACGG-----AGTG-TTAGCTGGTC---AGTCTCTGGTCTGCCCA i panTro2.chr12 C 0 I 857 s tarSyr1.scaffold_255302 2670 299 + 3490 --TCCACG--CGCGAAGGGTGGCCGTGC--GGGA-----C---TAGGT--GGAG----GAGAGAGCCGCGAGCAAGG---------C----------------------------------------CGAGGCCGGTGTG--GCGCCAGGATCC-----------GGCCGTCCCGCAG--------TGGG-----CCGCCCACAGGGACGCGGCCCCCTCAGCTTGTC--CCCCGCTCGAGCTGCGC--GGCAGGGCGGCCTCCTG--CTGGGCGC----------TGGGAACCCGAGCGACGGGT----CGGTGCGGTTCCGCGGCCCTGACGCGGCTAGAGC---CGGCTGGCCTGGCGCTGTCCA---CGCCCCGGACACACGG----CGGGGTTCAGCCAGTCA--AG-CTCCGGCCTGCCCG i tarSyr1.scaffold_255302 C 0 C 0 s micMur1.scaffold_9962 41889 305 - 51117 --TTCGTGCTTGCCGCCTG-GG--GTGG--GTGAATGACCCCGGGGGTGCGGAG----GAGAGAACCGTGCAGGGGGCGGTGT-CCC--------------------------------------------------------------GGCACC--AAGCACCTGACAGTCCCGGGGC-------AGAG-----CTGCTCGCAGGGACAAGG-CTCCTCAGCTCGTC--CCTGACACCAACCGCGCGTGGCTG--------CCCGACCTGGG-CA----------CGGGAGTCCGAGCGATGGAT----TTGCACTGTTCCGTGGCCCAGACGCAA-GAGGGACCGAGGCCGGCCTGGCTCCGTCCA---CGCCCCGGACCGACAGTG--CGGAGTTCAGCCGGTCA--AGTTCCCGGTCTGCCCA i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12470 320 - 13118 --TTCGTGTGCACCGCCTG-GG-CGTGG--AGGA------CCGTGAGCTGTGAG----GAGTGACCCGTGCCAGAGGCAGCGT-CCCC--GCC--GCGCCCGCC---------------------TTAGAGGCGGGTGC---------AGGCACC--AGG-ACCAAACGGTACCAGGGCTGAGCTGTGAG-----CTGTTCGCAGGGACACGGCCTCCTCAGCTCTTC--CCCAGCACGAACCGCGAGTGGCCGG-CGACTTCCTGGCCTGGC-AC----------AAAAAGTCGGGTAGATAGAT----TT--------------CCCTTATGTGA-GAGGGACTGAAGCCGGCTTGGCTCAGTCCGGGTAGCCAGGGACCTG-------------TCAGCCAGTCA--AGTTCACAGTCGGCCCA i otoGar1.scaffold_60607.1-13118 C 0 C 0 s oryCun2.chrUn0106 712522 262 + 1032594 --TTCCTG--CGAGCCGCGTAG--CTGC--AGAA-----CCCGCGGGC--TGT------------CCGC------TGCTCCCGACCC----------------------------------------CGAGGCAACAGC---------GGCCAGT--CGGCCCCTGTGTGGCCTGAGGC-------CCGG-----CCGCCCGCAGGGACGCGG----------------------------------------------CCTCCGGGCCCGG--AC----------GCGGAGTCCCGGCGATGAGC----TGGTGTCGTTCGTTGGCACGGACGCAG-AAGATCCCGAGGCCGGCCAGGCTGCGTCCA---CGCCCTGGGCCGACCGAGCCAGGCGTGCAGC-GGTCA--AGTCCTCGGTCTTCGCC i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 38121 297 + 44753 ---TTTCG--TGCAGGCTGCGG--AGGA--GAGA-----CCCGAACTC--GGAG----GGTCTCCTCGC------TGCTCCCA-CCC---------TGTCCACCCAGCAGGGACTTCGTGGCCCACGGAGGGGGGGTCCG--CG-----GGCACC--AGACACCTGCGCGT-CCAGGGT-------TGAG-----TCCCTCGCAGGGACGCGG----------------------------------------------CCTCTGGGCCTGGAC------------AGGGAATCGGAGCGATAAGT----CTGTGCCGC-CCGCGGCTCTGACGCGG-GAGCGGACGAGACCCGACTGGCTCCCTCCA---GGCCCTGGATCGACCTG---GGTGGCTCGGCCGGCCG--AGATCCTGGTCGGCGCA i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014649 276 - 76506943 ---TTTCG--TGCAGGCTGCGG--AGGA--GAGA-----ACCGAACTC--TGAG----GATATCCCTGC------TGGTCCCA-CCC---------CGCCCACC-----------------------AAGAGGGGGTCCG--CG-----GGCACC--AGGCACCTGCCCCT-CCGGGGC-------TGAG-----TCCCTCTTAGGGAAGGGG----------------------------------------------CTTCCGGGCCCGGGCAG----------AGGGAACTTGGACAATGAGT----TTGTACCGCTCTGTAGCTCTGATGCAG-GAGGGACCGAGGCCGGGCTGGCTGCTTCTA---CG-CCGGGATCGACCGT---GGGGGCTCAGCTGGTCA--AGATCCTGTTTCGCACA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64180370 267 - 94057673 ---CTCCG--TGCAGCCTGCGG--AGGA--GAGA-----ACCGCACCA--TGAG----GGTCTCCCCGC------TGCTCCCA-CCC-----------GCCACC----------------------------------CG--AG-------------AGAC-CCCGCGCA--CCAGGAG-------GGAG-----GGTCGCGGGCGGCAGGCA----------------------------------------------CCGCCCGTCCGGGGCTGAGTCCTCGCACGGGAGCCTGAGCCATGAGT----TTGTACCGTTTCGTAGCCCTGACGCGG-GAGGGACCGAGGCCGGGCTGGCTCCGTCCA---CGCCGCGGACCGACCGTG--GGGGGCTCAGCCGGCCA--GGATCCTGGTCTGCACT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3229098 215 + 42029645 ---TTCCG--TGCAGGCTGCGG--GGCA--GAGA-----ACCGAGCTG--TGAG----GGTCTCCCTGC------CGC---------------------CCATC----------------------------------CG--CG------------------CCCAC-----CCAGGAG-------CGA--------CCTC----------------------------------------------------------CCGCACAATCCAGTTTGCAGCACGCCACAGCGGGCGCGGCGACGAGG----CTGTCCGGT------GACCT---------------CGAGTCCCGGCTGGCTGCGACCA---CGCCCCAGACCTACCGT---GGGGGCTCAGCCGGCCA--AGCTCCTGTTCTGAACA i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 131594 357 - 3408981 TTCGGGCG--CGCCACC--TGG--GTACGAAGGG-----ACCGAGGGC--TGCGA---CAGAGAACTGTGAGGACAGCGGTCG-GCCA--GGCTAACAGGCACCCGGCCGGCGGTTCTCCCGCCCCAGAGAAAGGAT-CA--CG-----GGCACC--GGGCGCCTGCCCGTCCCGAGAT-------GGGACACCTTTCCTCGGAGGGACGCGGCC-ACTCAGCTTCTC--CCCAGCAAGAGACGCGCGCGGACAGGCGACTCCGGGGGCTGGA-------------CAGGAGTCG-GCTGATGAGG----GTGCACCGCTCCGCGGCCCGGAGACCG-CGGGCGCCGACGCCGCACCGGCTC----AA---AGCCTCGGGTCCACCGT---GGGGGGT--ACAGACTGTTAGCTCCTGGTCTAACCA i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_136297 3881 360 - 5039 TTCGGGCG--CGCGGCC--AGA--ATTC--AGGG-----CGCGAAGGC--TGCAAG--CAGAGACCTACGAGGACCGCCGACA-GCCG--GTCTCCCAGGCACCCCCCCGAAGGTTCTCCCG-CCCACAGAAACGATCCA--TG-----GGCGCT--GGGCGCCTGCCGGACCCCGGCT-------GGGACGCTTGCCTCTCGAGGGACGCGAAC-ACGCAGCTCAGC--CCCGGCGAGAGCCGCCCGCGGACTGGAGACTCCCGGGGCCGGG-------------CAGGCGCCG-GGTGACGGGGGAGTGAGCACCGTTCCGCGACCCTGAGGCGC-CGGGTGCCGAGGACGCACCGGTTC----AA---AGTCCCGGGCCGACAGC---GGCGGGT--ACAGACTGCCAGCTCCTGGTCTAACCG i proCap1.scaffold_136297 C 0 C 0 s dasNov2.scaffold_79192 541 318 - 11235 GTCTTGCG--TCCCGCCGGTGG--GTGC--AGGA-----TACGA-GGC--TGCGGGAAGAGAGAACCTTGAGGGAGGCGGTCT-CCCTGCGGCTTCCACCTCCCCCCAGGGCGGACCTCACGCCCCACATAAGGGGTGCAAGTG-----GGCACCAAGGCAGCCTGCCCG----------------GAGA------------AAGCGACGCGGCCTCCTCAGGTCTTCCGCTCTCCGGGCGGTTCGCGCGAACCGGCAGCTCCCGCGG-TAGA-------------CAGGAG--------------------------------------GAATCTG-GAGGAACTAAGGCCGCACCGGCTCTGCTCA---CGTCCCAGGCAGACTGT---GGGGTCTCAGCAGGTCG--AGTCCTCGATCTATCTC i dasNov2.scaffold_79192 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=136113.000000 s hg19.chrUn_gl000223 119574 163 + 180455 GGATA-ATCCGAGC-C-GCTTAGCTCCGCGCCTCCG---------------CGGCCACAGAGACTCAGCCAGGTACACCCG--CTGGCCAGA--TTCCGGTCCACTGAGTCTA-A---------GCCGGAAACAGCCCTGCACGCGCGCACCCGACTAAG---GCCGGGAGTGCGGCGCATGCGGAAGTGCGTCCTGC s ponAbe2.chr12 283968 157 - 136387465 GGATA-ATCCGAGC-C-GCTTAGCTCCGCGCCTCCG---------------CGGCCACAGAGACTCA------CACACCCG--CTGGCCAGA--TTTCGGTCCACTGAGTCTA-A---------GCCGGAAACAGCCCTGCACGCGCGCACCCGACTGAG---GCCGGGAGTGCGGCGCATGCGGAAGTGCGTCCTGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 256855 162 - 134511895 GGATA-ATCCCAGC-C-GCTTAGCTCCGCGCCTCCG---------------CGGTCACAGAGGCT-AGCCAGGTTCACCCA--CTGGCCAGA--TTTCGGTCCACTGAGTCTA-A---------CCCGGAAACAGCCCCGCACGCGCGCACCCGACTAAG---ACAGGGTGTGTGGCGCACGCGGAAGTGCGTCATGC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_255302 2969 162 + 3490 GGACG-CGCCGGGC-CGGGTCGACTCCGCGCCTCCT---------------TGACCGCGGAGACCCAGGACAGCGCGAGC---CCAGCCTCG--CACCGGTACACGGAGTCCC-A---------TTCGGAAACAGCCCGG-ACGAGCGCACCCGACTACG---GCCGGGGGTGCGGCGCACACTTAAGTGCGTCATGA i tarSyr1.scaffold_255302 C 0 C 0 s micMur1.scaffold_9962 42194 162 - 51117 GGACG-CTCTAGGC-CAGATTAATTTCGCGCCTCCG---------------CAGCCATAGAGACTCAGAC-AGGACACCC---CTGGCCCAG--GACGGGTTCCCTGAGCCCG-A---------GCCGGAAACAGCCCCGCACGCGCACAGCCGACAACG---GCACGGAGTGCGGCGCATGCGGAAGTGCGTCACGC i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12790 161 - 13118 GGATG-CTCTTGGC-CAGA-TAACTTCGTGCATCCA---------------CGGCCACAGAAACTCAAACAAGGAATCCC---CTCGCTCAGCTGCCAGGGTCC--GAGCCCG-A---------ACCGGAAACAGCCTCACAAGTGCACA-CCAATTACC---GCAGGGACTGCGGCGCGTATGGAAGTGCGTCACGT i otoGar1.scaffold_60607.1-13118 C 0 C 0 s oryCun2.chrUn0106 712784 119 + 1032594 -----------GGC-C------------AGCGGCCA---------------CCCCCACCGA----------------------CTGGACA----GCCAGGTCCCCAGCGCTTC-ACTGTTGCCGGCCGGAAGCGGTGCCG--CGCGCAGACCGGA-----------AGGCGCGCGGCGCACGAGGAAGTGCGTCACGG i oryCun2.chrUn0106 C 0 C 0 s vicPac1.scaffold_11817 38418 164 + 44753 GGACG-TTCCGGGC-CGGGTCAACTTCGCGTCTCCGCCAGGCCCG------CGGCGACAGAAACTCT-----GGACTGCC---CGGGCCCG---CCCCTGGGCTCTGACGCCC-A---------GCCGGATACAGCCCCTTAGGCGCGTACTTGACTGCG---GCAGCGG-CGCGGCGCACGCGGAAGTCCGTCACG- i vicPac1.scaffold_11817 C 0 C 0 s bosTau4.chr17 30014925 163 - 76506943 GGACGTTTCTGGGC-CAGGATAACTTCGCGTCTCAGCTAGCTCCG------CAGTCTCTGTAA--CA-----GAACGCCC---CCGCCCCG---CCCCTGAGCACAGAAGCCC-T---------GACGGATACAGCCCGTTAAGCGCGTACTCCTTCACA---GCCGCAG-GGCGGCGCAGGCGGAAGTACGTCACG- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64180637 169 - 94057673 GGACG-CTCCGCGC-CGTGTTAGCTCCGCGCCTCCGCCCGCTTGG------CGGCCACAGAAACTCA-----GGACGTCG---CCGGGCCG---CTCCCGTCCACTGACGTCG-C---------GCCGGAAACAGCCCCGCAGGCGCGTACCCTACTACGGCTGCTGCGGCGGCGGCGCACGAGGAAGTACGTCATGC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3229313 161 + 42029645 GGACG-CGCCGGGAGGGGGCTAAATCTGTG-------CCGCCTGGGATCCAGAGCCACAGAAGCTCA-----GGAATCCG---CGGGCCGG---CTCCTGATCA---AACCCA-A---------GACGGAAACAGCCCTGGAGGAACGTACCTGACTACA---GCCGCGGGCGCGGCGCA-GCGGAAGTACGTCATG- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 131951 148 - 3408981 GGACC-CTCTGGGC-CAGGTTAACTGGGTGCATCCATTGGGTCAG------CAATG--AGAAAATCA-GTCCGGGCGCTC---CAG--------CTACGGTCCACTGACAC---C---------CCCTGCAGGCGCCGCA-----------CAAACTACA---GCGTCGG-TTCGGCGCAC-AGGAATTGCGTCAGGC i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_136297 4241 147 - 5039 CGACC-CTTTGGGC-CCCGTGGACTCCGGGCACCCACTGGGTCAG------CGACC--AGAACACCA----CGGGCAACC---CCG--------CGACGGTCCGCGGACCCCGAC---------ACTCCCAGGAGGCGCG-----------CGCACCGCG---ACCTC-G-TGCGTCGCAC-AGGAATTGCGTCACGA i proCap1.scaffold_136297 C 0 C 0 s dasNov2.scaffold_79192 859 157 - 11235 CGACA-ACACGGAC-AAGATCACCTGCGCGCATCCGCGGAGTCCG------CAGGCAAAGAGACTCA-CTCAGAACGCTCGCTCGG--------ATCCGGTCTGCAGACGCTG-A---------ACCGGAAACAGCTCTG-----------CAGACTAAG---GCCTTGGCTGCGGCGCACAAGGAAATGCGTCACGC i dasNov2.scaffold_79192 C 0 N 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 243339 857 - 135371336 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=-30874.000000 s hg19.chrUn_gl000223 119737 31 + 180455 GTCGATGCGCCAGGACGCGA--A--GGCG-CCGG-A-A- s ponAbe2.chr12 284125 31 - 136387465 GTCGATGCGCCAGGACGCGA--C--GGCG-CCGG-A-A- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257017 32 - 134511895 GTCGATGCGCCAGGACGCGA--C--AGCGCCCGG-A-A- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_255302 3131 32 + 3490 TTCGACTCGGCGGGACGCCT--C--GGCG-CCGT-ATA- i tarSyr1.scaffold_255302 C 0 C 0 s micMur1.scaffold_9962 42356 26 - 51117 GCTGATGAGCCGG-----GA--G--GGCG-CCGA-A-A- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12951 30 - 13118 GGAGAGACGCAGGGACA-GA--A--GGCG-CCTG-A-C- i otoGar1.scaffold_60607.1-13118 C 0 C 0 s oryCun2.chrUn0106 712903 33 + 1032594 CTGGGGCGGTGGGGACGCAA--CCAGCTG-CCGG-A-A- i oryCun2.chrUn0106 C 0 I 13124 s vicPac1.scaffold_11817 38582 19 + 44753 ----------GCGGACGAGC--C--GGC---CGG-A-A- i vicPac1.scaffold_11817 C 0 I 2 s bosTau4.chr17 30015088 19 - 76506943 ------------TGACGACCAGC--GGC---GGG-C-A- i bosTau4.chr17 C 0 I 2 s equCab2.chr8 64180806 30 - 94057673 ATCGATGCG-CCGGACGAGA--C--GGCA-CGGA-A-A- i equCab2.chr8 C 0 I 2 s canFam2.chr26 3229474 30 + 42029645 GCGGATTCC-GTGGACCCAA--C--GGCG-ACCG-A-A- i canFam2.chr26 C 0 I 2 s loxAfr3.scaffold_113 132099 23 - 3408981 ATCGCGGC----------GC--C--GGTG-CCAGAA-AA i loxAfr3.scaffold_113 C 0 C 0 s proCap1.scaffold_136297 4388 32 - 5039 GCCGAGGCGCCCGTCGAAGC--C--GGTG-CCAG-A-AG i proCap1.scaffold_136297 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 243339 857 - 135371336 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=59469.000000 s hg19.chrUn_gl000223 119768 51 + 180455 AAACTACATCTCCCACAATCCTCGGAGAAGGCTCCCTCGTTACAGGCCTGG- s ponAbe2.chr12 284156 51 - 136387465 AAACTACATCTCCCACAATCCTCGGAGAAGGCTGCCTCGTTACAGACCTGG- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257049 51 - 134511895 AAACTACATCTCCCACAATCCTCGGCGAAGGCTCCCTAGTTACGGGCCTGA- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_255302 3163 47 + 3490 TAAACACATCTCCCGCGATCTTCTGTTAATACT--CTGGTT--GGACTAGA- i tarSyr1.scaffold_255302 C 0 C 0 s micMur1.scaffold_9962 42382 50 - 51117 GGACTGCATCTTCCACAGC-CTCTAGGAGAGGCGTCTCGTTCCGGCCTGGG- i micMur1.scaffold_9962 C 0 C 0 s otoGar1.scaffold_60607.1-13118 12981 51 - 13118 GGACTACGTGTCCCACTGCTCTCTGCGAAGAGCGCATTGTTTCCGCCCTGG- i otoGar1.scaffold_60607.1-13118 C 0 N 0 s vicPac1.scaffold_11817 38603 51 + 44753 CAACTGCACCTCCCAGAACCCTCTGCGGCGGGCCCCGGCTCACTGGCCGGG- i vicPac1.scaffold_11817 I 2 N 0 s bosTau4.chr17 30015109 30 - 76506943 AAACTACATCTCCCAGAATCCTCTGTGCAG---------------------- i bosTau4.chr17 I 2 C 0 s equCab2.chr8 64180838 50 - 94057673 AAACTACATCTCCCAGGAACCTCT-CGGAGGGTCCCTGCTTACTGGCCCAG- i equCab2.chr8 I 2 C 0 s canFam2.chr26 3229506 51 + 42029645 AAACTACATCTCCCAGAAGCGTCTGCGGAGGATCCTTGCTTACAGGCCGGG- i canFam2.chr26 I 2 C 0 s loxAfr3.scaffold_113 132122 31 - 3408981 AAACTACATCTCCCAGAAGGCTTTGCGCAGG--------------------- i loxAfr3.scaffold_113 C 0 I 9764 s proCap1.scaffold_136297 4420 37 - 5039 AAACTACATCTCCCAGAAGG---------------CTACGCTCAGGGCGCGT i proCap1.scaffold_136297 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 243339 857 - 135371336 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=-5984.000000 s hg19.chrUn_gl000223 119819 58 + 180455 CTTCCAGCT-G-CCGCGGATCTA--GAGAGGGGCAC--AGCCTGA---------------CGGGA---AAGGAAGGCTGGGA s ponAbe2.chr12 284207 58 - 136387465 CTTCCAGCT-G-CAGCGGATCTA--GAGAGGGGCAC--AGCCTGA---------------CGGCA---AAGGAAGGCTGGGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257100 58 - 134511895 CTTCCGGCT-G-CAGCGTATCTG--GAGAGGGGCAC--AGCCTGA---------------CAGGA---AAGGAAGGTTGGGA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_255302 3210 43 + 3490 CTTCCAGCC-G-GAGGCGATCGA--GATAAGGGCGG--ATTTTGA---------------AAGG------------------ i tarSyr1.scaffold_255302 C 0 N 0 s micMur1.scaffold_9962 42432 56 - 51117 --CCCAGCG-GCCCGCAGACCTG--AAG-GGGGCGG--AGCCTGA---------------CGGGA---GAGCCAAGCCGAGA i micMur1.scaffold_9962 C 0 C 0 s bosTau4.chr17 30015139 46 - 76506943 ----------G-AAGAGGACCTGGATAGACGGGCGA--GGCCTCA---------------TGGGA---AAGGTGGGC----- i bosTau4.chr17 C 0 I 72 s equCab2.chr8 64180888 22 - 94057673 CTTCCAGCAGG-AGGCGGATCTG----------------------------------------------------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3229557 64 + 42029645 CTTCCGGCAGG-AGGCAGATGTGCAGAGATGGGCAG--AGCTTCT---------------GGGGACCCAGACAGGGCTGGCA i canFam2.chr26 C 0 C 0 s proCap1.scaffold_136297 4457 73 - 5039 -TCCCCGCC-G-CGCTGCCCCGG--AAGACGGTCGGCCAGCCTGAGCCGCAGCCGGCCGGCGGGA---CGGGTGGC-CGGGA i proCap1.scaffold_136297 C 0 I 102 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 243339 857 - 135371336 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=13370.000000 s hg19.chrUn_gl000223 119877 95 + 180455 GGGG------GCTCCGCCAGCGGCACCTGGTTCACCCT----CCCACGGCTGCGCCAGGTTCAGTACCA-TCCTCGGAGCCTGGACGCCCAGTTTCCCAGGGCCTG s ponAbe2.chr12 284265 95 - 136387465 GGGG------GCTTCGCCAGCGGCACCTGGTTCACCCT----CCCTCGGCTGCGCCAGGTTCAGTACCA-TCCTCGGAGCCTGGACGCCCAGTTTCCCAGGGCCTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257158 95 - 134511895 GGGG------GCTCCGTCAGCGGCACCTGGTTCACCCT----CCCCCGGCTGCGCCAGGTTCAGTACCA-TCCTCGGAGCCCGGACGCCCAGTTTCCCAGGGCCTG i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 42488 92 - 51117 ----------GCTCTGCGGCCGGCTGCGGGTTCCTCCT----CCCGCAGCCCCGCTCGGTGCACCCTCAGTTGACTGATCCCAAGCACCCAGCACCCCAGAGCCGG i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64180910 57 - 94057673 ----------GACGGTCCCGCACCGCCCCGGCTTCCCCAGAGCCCA-------------------------------------CGCGGTCGGGG--CAAGAGCCCG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3229621 78 + 42029645 GAGGGGACCAGGTGGGCCTGTGGCGCTCGGCCCTGCCTGGGTCCAACCTCAGCACAAGGGCCGACATCC-T----GAGGCCTG----------------------- i canFam2.chr26 C 0 I 1296 e proCap1.scaffold_136297 4530 102 - 5039 I e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 243339 857 - 135371336 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015185 72 - 76506943 I a score=6192.000000 s hg19.chrUn_gl000223 119972 40 + 180455 TAGAACTGACTC----------AGAGTCC----GACCCCA------GCAGA-GACGCAGGC--- s ponAbe2.chr12 284360 40 - 136387465 TAGAACTGACTC----------AGAGTCC----GACCcca------gcaga-gacgcaggc--- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257253 40 - 134511895 TAGAACTGAGTC----------AGAGTCT----GACCCCA------GCAGA-GACGCAGGC--- i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 42580 51 - 51117 CGGAGCAGACTCAGATCTGGGAAGAGTCC----GACCTCA------GCAGAGGACTCGGGC--- i micMur1.scaffold_9962 C 0 C 0 s equCab2.chr8 64180967 23 - 94057673 GGGAA-----------------GGGGTTG----GAGCGTG------G-----GGC--------- i equCab2.chr8 C 0 C 0 s proCap1.scaffold_136297 4632 53 - 5039 TGGAGTCGATCC----------AGACTCCTAATGACCCCACGGGCTGGAGT-AGCACCGCCCGT i proCap1.scaffold_136297 I 102 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 243339 857 - 135371336 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015185 72 - 76506943 I e canFam2.chr26 3229699 1296 + 42029645 I a score=65782.000000 s hg19.chrUn_gl000223 120012 88 + 180455 ----------------GTgct--gaggttttg----------------------------------------atatcaaacaagat---agggttcagaccagaagg------cacagcaaaaaaggacgctttgtaaagctaaaagctgcagtt s ponAbe2.chr12 284400 88 - 136387465 ----------------gtgct--gaggttttg----------------------------------------atatcaaacaagat---agggttcagaccagaagg------cacagcaaaaaaggacgctttgtaaagctaaaagctgcaatt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257293 88 - 134511895 ----------------GTgct--gaggtcttg----------------------------------------atatcaaacaagat---agggttcagaccagaagg------cacagcaaaaaaggacgctttgtaaagctaaaagctgcaatt i rheMac2.chr11 C 0 C 0 s micMur1.scaffold_9962 42631 75 - 51117 ----------------GTGCTCCCAGGTCTTG----------------------------------------ATATGACATA--------------AGA----AAGG------CGCAGCAAGAAAGGACACGTTATATGGATAAAAGCTGCAGTT i micMur1.scaffold_9962 C 0 N 0 s bosTau4.chr17 30015257 88 - 76506943 ----------------GTGGT--TCGGTCTTG----------------------------------------AGGCCAAACCAGGT---AGAGTTCGTAGAGGAAGG------CACAGCAGAGAACGACACCGTGTGAGACTATGAGGCGCAGTG i bosTau4.chr17 I 72 C 0 s equCab2.chr8 64180990 88 - 94057673 ----------------GTCCG--CAGGtcttg----------------------------------------atgtcaaacgagct---agggttgagaccgaaagg------cgtggcagcgaaggacactttgtgaggctacgagctgcgttt i equCab2.chr8 C 0 C 0 s panTro2.chr12 244196 62 - 135371336 ----------------------------------------------------------------------------------AGAT---AGGGTT-AGACCAGAAGG-------ACAGcaaaaaaggacgctttgtaaagctaaaagctgcagtt i panTro2.chr12 I 857 C 0 s proCap1.scaffold_136297 4685 153 - 5039 GTGGTTTCCGGGGGGTGTCCG--GTGGGTTTGCATTGGCTTTTCGGTTACTAGCCAGAACTCTTTAATCACTATGCCACCAAGGTTTCCAGAGCCCTGAcagaaagggataaacgtgaccaaaaaggacgttttataaagctaaaagccagaatc i proCap1.scaffold_136297 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e canFam2.chr26 3229699 1296 + 42029645 I a score=90789.000000 s hg19.chrUn_gl000223 120100 73 + 180455 catagggttaaataacagtttt-------------gaatatcagtgcaccaaataatacagtaaccaacttcataaaggagaaact s panTro2.chr12 244258 73 - 135371336 catagggttaaataacagtttt-------------gaatatcagtgcaccaaataatacagtaaccaacttcataaagGAGAAACT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 284488 73 - 136387465 catagggttaaataacagtttt-------------gaatatcagtgcaccaaatagtagagtaaccaacttcataaaggagaaact i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257381 72 - 134511895 cgtagggttaaataacagtttg-------------gaa-atcagtgcaccaaataatagagtaaccaacttcataaagAAGAAACT i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30015345 84 - 76506943 CACAGGGTTATAAAATAGTATATCAGTGTTATACTGAATATCAGTGCACGAAATAAT--AGTTACCAACTTTATAGAGGAGAAAGT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64181078 73 - 94057673 cacagggttataaaatagtttg-------------gaacatcagtgcaccaaataatacagttaccgacttcataaagGAGAACCT i equCab2.chr8 C 0 C 0 s proCap1.scaffold_136297 4838 73 - 5039 cacagcgttgtatcacggcttt-------------aaatagaattgtactaaatgttacaataatcaacttcataaagGGGACGCT i proCap1.scaffold_136297 C 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e canFam2.chr26 3229699 1296 + 42029645 I a score=35600.000000 s hg19.chrUn_gl000223 120173 48 + 180455 atagtagaTGTGAAAAACAAATAAATAGAACCACACCAGTAAtgaaac s panTro2.chr12 244331 48 - 135371336 ATAGTAGATGTTAAAAACAAATAAATAGAACCACACCAGTAAtgaaac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 284561 48 - 136387465 atagtagatgttaaagacaaataaatagaaccacaccaataAtgaaac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 257453 48 - 134511895 ATAGTAGATGTTAAAGACAAATAAATAGAACCACACCAATAAtgaaac i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30015429 38 - 76506943 ATAGTAGATGAGAAG----------TAGAAGTACATCAATATTGGGAC i bosTau4.chr17 C 0 I 1689 s equCab2.chr8 64181151 45 - 94057673 ACAGTGAATGAAAAGAG-AAATTAATAGAAGCACAGCGATAATAGA-- i equCab2.chr8 C 0 I 1026 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e canFam2.chr26 3229699 1296 + 42029645 I a score=1291258.000000 s hg19.chrUn_gl000223 120221 2514 + 180455 tgcctttgcaaaaattatatcagtgagaaaattatagcagtgggggaggtctaatctaaccaaacccccaactctgcgcgcctttggctgtcaagatgccttcattattcctgggcttaggccaagctaactttggaagacatttaggttatagttcaaatgatagcccttttccaaaacccaactgcctttgtaaaacctatgagagaccaccaagctagcgggaggagaggagcctgaattctgctaagatgtggattggtcacaagacacgcaacttccccagttactcctacagataacaccactattgtagattggccttttgagatttaaaaatgtgcaaaatggccaggcacgatggctcacgtctgtaatcccagcattttggagggctgaggtgggtggatcgcatgagcccaggagttggagactagcctgggcaacatggtgaaacctcgtctctacaaaacatatcaaaagtaagccggatgtggtggcatgcatctgtagtctcagctacttggggggctaaggcagcagaattgcttgagcccgtgaggtggaggttgcagtgagccgagattgcaccattgcactccagcctcgatgacaggagtgaaaccctgtctcaaaaaaaaaaaaa-----------aaaaaaaagtgccaaacatctgaatagacatttctcaaaagaagacatacaaatggcaaacaggtatatgaaaaggtacacaatataattgatcatcagagaaatgcaaatcaaaactacaacgagatattatctcaccccagttaaaatggcttttatccaaaagacaagcaataataaatgctggtgaggatatggggaaaagggaaccctggtacattcttggtgggaatgtaaattagtacaaccactatggagaacagtttggaggttcctcaaaaaaataaaaatagagctaccatacaatgcagctatcccactcctaggtatatacccgaaagaaagaaaatcagtatatccaagagctgtctgcactcccttgttgactgcagcactattcacaatagccaagatttggaagtaaccgaagtgtcaatcaacaggttaatgaataaagaaaatgtggtacatatacacaatggagtactaggaagccataaaaaagaatgagatcctgtcatttgcaacaacatggatggaactggagatcattatattaagtgaaataagcgaggcagag-aagacaaacttcacatattctcacttatttgtgagagccaaaaattaaaacaattgaactcatggtgatagagagtagaaagatggttaccagcagctgggagggtagtgggacactgtgggggatggaaatagtcatttggcagaaaaaatagttagaataagacctagtattttctagcacaacaggatatactcaaaaataatttaattgtacattttaacataactaaaagtataattggattgcttgtaacacaaaggataaatgcttaagggtaccccattttccctgatgtgatttttatgcattgcataataatcattgcattataatatgcattctatatcaaaatatctcatgtaatccataaatgtatacacctactatgtactcataataattaaaaattaaaaaaattagccaggtgtggtggcatacacctgtaatcccagctacttgggaggctgaggcaggagaaatgcttgatcctgagaggttgaggctgcagtgagccatgatcccaccactgcgttccagtctgggcaacacaatgagaccctgtctcaaaaaaagaaaTTAATtaattaaaaattttcccacagagaaaatctgggaatggatggctccactagtgagttccatcaaatacttaaagaagaaaggataattctttacaaattctttcagaaaatagatgagagggaatacttcccaacttattctatgaagccagtattattctcataccagagctagacaaagacatcacgagggaaaaacaaaacagagctacacaccaatattcctatggtgtgtagtaccatagacatagacacaaaaattctta--aggcttgagaaaactctttttctcctgaaactggttttgcaggtggttactcatgtgaaaacttaccaaattgtttaaatacatgcagtttattctatatcactttataacttaataaagctgtttaagaaaaatgttagtaagctgaatctggcaacatacaaaaaggattttgtaaaatgaccaaatggaatatataccaagaatgaaagattggttcaacactgaaaatcagtataataaaaaacaaaaactatgtgactatttcaatagatgcagcaaaaggcatttagcaaaaccaacgtctattcatggcaaaaactctcaacaatctaggaataaaagggaatttcctcaacttgataatgggcattttttaaaaaccctagctaacatcctacagaatggtgaaagactgagtgtttttcccctataata s rheMac2.chr11 257501 2474 - 134511895 tgcctttgcaaaaattatatcagtgagaaaattatcgccgtgggggaggtctaatctaatcaaacccgcgaccccacgcgcctttggct------------------cttctgggcttaggccaagctaactttggaagacacttaggttatagtttaaatgataacccttttccaaaactcaactgcctttgt-aaacctatgagagaccacaaagctggggggaggagaggagcctgaatt---ctaagatgtagattggtcacaagatatgcagcttccccaattactcccacagataataccactattgtagattaacctttcgagatTTAAAAATGTGCAAAATggccagg--cgatggctcacgtctgtaatcccagcactttggagggctgaggtgggtggatcgcatgagcccaggagttggagactagcctgggcaacatgacgaaacctcgtctctacaaaacatatcaaaagtcagccggatgcagtggcatgcatctgtagtctcagctacttgggaggctaaggcagcagaattgcttgagcccgtgaggcggaggttgcagtgagccgagattgcaccattgtgctccagcctggatgacaggagtgaaa-cctgtctcaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaaaagccaaacatctgaatagacatttctcaaaagaagacatacaaatggcaaacaggtatatgaaaaggtatacaatatcattgatcatcagagaaatgcaaatcaaaactacaatgagatattatctcaccccagttaagatgactattatccaaaagacaagcaataataaatgctggtgaggttatggggaaaagggaacacctgtacactcttggtgggaatgtaaattagtacaaccactatggag---agtttggaggttcctcaaaaaaataaaaatagaactaccatacaatccagctatcctactcctaggtatgtacccaaaagaaagaaaatcagtatatttaagcgctgtctgcactcccttgtttattgcagcactattcacaatagtcaagatttggaagtaactgaagtgccaatcaacaggttaatgaataaaggaaatgtgatacatatacacaatggagtactaggaagccataaaaaagaatg-gatcctgtcatttgcaacaacatggatagaactggagatcattatattaagtgaaataagcgaggcagagaaagacaaacttcacatattctcacttatttgtgggagccaaaaattaaaacaattgaactcatgatgatgaagagtagaaagatggttaccagcagct-ggagagtagtgggactctgggggggatagaaatggtcattcggtagaaaaaatagaaagaataagacctaatattttctagcacaacaggatatactcaaaaataatttaattgtacattttaaaatagctaaaagtataattggattgcttgtaacacaaaggataaatgcttgaggataccccattttccctgatgtgatttttatgcattgcata--------------ataatatgcattctatatcaaaatgtctcatgtaatccataaatgtatacacctactatatactcctaataattaaaaattttaaaaattagccaggtgtggtggcatacacctgtaatcccagctacttgggaggctgaggcaggagaaatgcttgatcctgagaggttgaggctgcagtgagccatgatcccaccactgcattccagtctgggcaacagaatgagaccctgtctcaaaaaaagaaaTTAATtaattaaaaattttcccacagagaaaatctgggagtggatggctccactagtgagttccatcaaatatttaaagaagaaaggataattcttcagaaattatttcagaaaatagatgagagggaatacttcccaacttattctatgaagccagtattattgtcatact--agttagacaaagacatcacaagggaaaaacaaaataaaactacacaccaatattcctatggtgtgtagtaccatagacatagacacaaaaattcttaacaggcttg----gactctttttctcctcaaactggttttgcaggtgtttactcgtgtgaaaacttaccaaattgtttaaatatgtgcagtttattctatatcca-ttataacttaataaagctgtttaagaaaaatgttagtaaactgaatctggcaacgtacaaaaaggattttataagatgaccaaatggaatatataccaagagtgtaagatcggttcaacactgaaaatcagtataataaaagacaaaaactatatgactatttcaacagatgcagcaaaaggcatttagcaaaaccaacatctactcatggcaaaaactctcaaccatttaggaataaaagggaatttcctcaacttgataatgggca-tttaaaaaaaccctagctaacatcctacagaaccatgaaagactgaatgtttttcccctataata i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 284609 2508 - 136387465 tgcctttgcaaaaattatatcagtgagaaaattatagcagtgggggaggtctaatctaaccaaaccgccgactctgcatgcctttggctgtcaagatgccttcattattcctgggcttaggccaagctaactttggaagacatttaggttatagtttaaatgatagcccttttccaaaacccaactgcctttgtaaaacctatgagagaccaccaagctagcgggaggagaggagcctgaattctgctaagatgtggcttggtcacaagacatgcaacttccccagttacttctacagataacaccactattgtagattggccttttgagatTTTAAAATGTGCAAAATggccaggtacgatggctcacgtctgtaatcccagcactttggagggctgaggtgggtggatcgcatgagcccaggagttggagactagcctgggcaacatagcgaaacctcgtctctacaaaacatatcaaaagtaagccggatgcagtggcatgcatctgtagtctcagctacttggggggctaaggcagcagaactgcttgagcccgtgaggtggaggttgcagtgagccgagattgcaccattgcactccagcctggatgacaggagtgaaaccctgtttgaaaaaaaaaa--------------aaaaaaaagtgccaaacatctgaatagacatttctcaaaagaagacatacaaatggcaaacaggtatatgaaaaggtgcacaatataattgatcatcagagaaatgcaaatcaaaactacaatgagatattatctcaccccagttaaaatggcttttatccaaaagacaagcaataataaatgctggtgaggatatggggaaaagggaaccctggtacactcttgatgggaatgtaaattagtacaaccactatggagaacagtttggaggttcctcaaaaaaataaaaatagagctaccgtacaatccagctatcccactcctaggtatatacccaaaagaaagaaaatccgtatatccaagagctatctgcactctcttgtttattgcagcactattcacaatagccaagatttggaagtaaccgaagtgtcaatcaacaggttaatgaataaagaaaatgtggtacatatacacaatggagtactaggaagccataaaaaagaatgagatcctgtcatttgcaacaacatggatggaactggagatcactatattaagtgaaataagcgagtcagag-aagacaaacttcacatattctcacttatttgtgagagccaaaaattaaaacaattgaactcatggtgatagagagtagaaagatggttaccagcagctgggagggtagtggaacactgtgggggatggaaatggtcatgcggcagaaaaaatagttagaataagacctagtattttctagcacaacaggatatactcaaaaataatttaattgtacattttaaaataactaaaagtataattggattttttgtaacacaaaggataaatgcttgaggataccccattttccctgatgtgatttttatgcattgcataataatcattgcattataatatgcattctatatcaaaatatctcatgtaatccataaatgtatacacctactatgtactcataataattaaaaaTTTAaaaaattagccaggtgtggtggcatacacctgtaatcccagctacttgggaggctgaggcagaagaaatgcttgatcctgagaggttgaggctgcagtgagccatgatcccaccactgcattccagtctgggcaacagaatgagaccctgtctcaaaaaaagaaaTTAATtaattaaaaattttcccacagagaaaatctgggaatggatggctccactagtgagttccattaaatacttaaag----aaggataattctttagaaattctttcagaaaatagatgagagggaatactttccaacttattctatgaagccagtattattttcataccagagctagacaaagacatcacaagggaaaaacaaaacaaaactacacaccaatattcctatggtgtgtagtaccatagacatagacacaaaaattcttaacaggcttgagaaaactttttttctcctcaaactggttttgcaggtgtttactcatgtgaaaacttaccaaattgtttaaatatatgaagcttattctatatcaa-ttataacttaataaagctgtttaagaaaaatgttagtaaactgaatctggcaacatacaaaaaggattttataaaatgaccaaatggaatatataccaagaatgaaagattggttcaacactgaaaatcagtataataaaaaacaaaaactatgtgactatttcaatagatgcagcaaaaggcatttagcaaaaccaatgtctattcatggcaaaaactctcaacaatctaggaataaaagggaatttcctcaacttgataatgggcatttttaaaaaaccctagctaacatcctacagaacggtgaaagactgagtgtttttcccctataata i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 244379 2523 - 135371336 tgcctttgcaaaaattatatcagtgagaaaattatagcagtgggggaggtctaatctaaccaaacccccaactctgcgcgcctttggctgtcaagatgccttcattattcctgggcttaggccaagctaactttggaagacatttaggttatagttcaaatgatagcccttttccaaaacccaactgcctttgtaaaacctatgagagaccaccaagctagcgggaggagaggagcctgaattctgctaagatgtggattggtcacaagacacacaacttccccagttactcctacagataacaccactattgtagattggccttttgagatTTAAAAATGTGCAAAATggccaggcacgatggctcacgtctgtaatcccagcattttggagggctgaggtgggtggatcgcatgagcccaggagttggagactagcctgggcaacatggtgaaacctcgtctctacaaaacatatcaaaagtaagccggatgcggtggcatgcatctgtagtctcagctacttggggggctaaggcagcagaattgcttgagcccgtgaggtggaggttgcagtgagccgagattgcaccattgcactccagcctcgatgacaggagtgaaaccctgtctcaaaaataaataaataaataaataaaaaataaagtgccaaacatctgaatagacatttctcaaaagaagacatacaaatggcaaacaggtatatgaaaaggtacacaatataattgatcatcagagaaatgcaaatcaaaactacaacgagatattatctcaccccagttaaaatgacttttatccaaaagacaagcaataataaatgctggtgaggatatggggaaaagggaaccctggtacactcttggtgggaatgtaaattagtacaaccactatggagaacagtttggaggttcctcaaaaaaataaaaatagagctaccatacaatgcagctatcccactcctaggtatatacccgaaagaaagaaaatcagtatatccaagagctgtctgcactcccttgttgactgcagcactattcacaatagccaagatttggaagtaaccgaagtgtcaaacaacaggttaatgaataaagaaaatgtggtacacatacacaatggagtactaggaagccataaaaaagaatgagatcctgtcatttgcaacaacatggatggaactggagatcattatgttaagtgaaataagcgaggcagag-aagacaaacttcacatattctcacttatttgtgagagccaaaaattaaaacaattgaactcatggtgatagagagtagaaagatggttaccagcagctgggagggtagtgggacactgtgggggatggaaatggtcatttggcagaaaaaatagttagaataagacctagtattttctagcacaacaggatatactcaaaaataatttaattgtacattttaacataactaaaagtataattggattgcttgtaacacaaaagataaatgcttaagggtaccccattttccctgatgtgatttttatgcattgcataataatcattgcattataatatgcattctatatcaaaatatctcatgtaatccataaatgtatacacctactatgtactcataataattaaaaattaaaaaaattagccaggtgtggtggcatacacctgtaatcccagctacttgggaggctgaggcaggagaaatgcttgatcctgagaggttgaggctgcagtgagccatcatcccaccactgcgttccagtctgggcaacacaatgagaccctgtctcaaaaaaagaaaTTAATtaattaaaaattttcccacagagaaaatctgggaatggatggctccactagtgagttccatcaaatatttaaagaagaaaggataattctttagaaattctctcagaaaatagatgagagggaatacttcccaacttattctatgaagccagtattattctcataccagagctagacaaagacatcacaagggaaaaacaaaacagagctacacaccaatattcctatggtgtgtagtaccatagacatagacacaaaaattctta--aggcttgagaaaactctttttctcctgaaactggttttgcaggtggttactcatg--aaaacttaccaaattgtttaaatacatgcagtttattctatatcactttataacttaataaagctgtttaagaaaaatgttagtaagctgaatctggcaacgtacaaaaaggattttgtaaaatgaccaaatggaatatataccaagaatgaaagattggttcaacactgaaaatcagtataataaaaaacaaaaacgatgtgactatttcaatagatgcagcaaaaggcatttagcaaaaccagcgtctattcatggcaaaaactctcaacaatctaggaataaaagggaatttcctcaacttgataacgggcattttaaaaaaaccctagctaacatcctacagaacggtgaaagactgagtgtttttcccctataata i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=85823.000000 s hg19.chrUn_gl000223 122735 219 + 180455 ggaaacaagcaagggtgtctgctttcaa----cacttctgttcaaagttgcactgg------atgttctagcc-----ggTTCTGTTCCACGTTGCACTggatgttctagccagttctgttccacgttgcactg----------gatgttctagcc-----ggTTCTGATCCACGTTGCACTGGATGTTCTAGCCGGTTCTGATCCACGTTGCACTGGATGTTCTAGTCGGTTCTGTTCCACGTTGTAC s panTro2.chr12 246902 151 - 135371336 ggaaacaagcaagggtgtctgctttcaa----cacttctgttcaaagttgcactgg------atgttctagcc-----ggTTCTGTTCCACGTTGCACTGGAT-----------------------------------------------------------------------------------GTTCTAGCCGGTTCTGATCCACGTTGCACTGGATattctagccggttctgttccacattgtac i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 287117 219 - 136387465 ggaaacaagcaagggtgtctgctttcaa----cacttctgttcaacgttgcactgg------atgttctagcc-----ggTTCTGTTCCACGTTGCACTGGATGTTCTAGCCGGTTCTGTTCCACGTTGCACTG----------GATGTTCTAGCC-----GGTTCTGTTCCACGTTGCACTGGATGTTCTAGCCGGTTCTGTTCCACGTTGTACTGGATGTTCTAGTTGGTTCTGTTCAACGTTGTAC i ponAbe2.chr12 C 0 I 182 s rheMac2.chr11 259975 219 - 134511895 ggaaacaagtaagggtgtctgctttcaa----cacttctgttcaacgttgtactgg------atgttctagct-----ggttgtgttcaacgttgtaccggatgttctagttgcttctgttcaacgttgtactg----------gatgttctactt-----gtttctgttcaaccttgtaccggatgtcctagctggttccgtccagcattgtaccggatgttctagttggttccgttcagcgttataa i rheMac2.chr11 C 0 I 34 s oryLat2.ultracontig25 73476 247 - 228504 GGAACAAAGGAAAGACATGAGTCTACGAGGTTCAGCTCGGTTAAAAG--GTTCTGGTCTACAAGGTTCTGGTCTATGAGGTTCTGGTCTACGAGGTTCAGCCTGGTCTATGAGGTTCTGGTCTACGAGGTTCAGCCTGGTCTATGAGGTTCTGGTCTACGAGGTTCTGGTCTACGAGGTTCAGGCTGGTCTAGAAGGTTCTGGTCTACGAGGTTCAGTCCGGTCTAGAAGGTTCTGGTCTACGAGGTTC i oryLat2.ultracontig25 N 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=80942.000000 s hg19.chrUn_gl000223 122954 159 + 180455 TGGATGTTCTAGCCGGTTCTGTTCCACGTTGAACTGGATGTTCTAGTTGGTTCTGTTCAACATTGTACTGGATGTTCTGGCTAATACTGTTCAACGTTGCACTggatgttctagttggttctgttcaatgttgtactggatgttctagctggtgcaatc s panTro2.chr12 247053 159 - 135371336 tggatgttctagcTGGTTCTGTTCCACGTTGTACTGGATGTTCTAGTTGGTTCTGTTCAACGTTGTACTGGATGTTCTGGCTAATACTGTTCAACGTTGCACTggatgttctagttggttctgttcaatgttgtactggatattctagctggtgcaatc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 287518 155 - 136387465 TGGATGTTCTAGTTGGTTCTGTTCCACGTTGTACTGGATGTTCTAGTTGGTTCTGTTCAACGTTGTACTGGATGTT----CTAATACTGTTCAACGTTGCACTggatgttctagttggttctgttcaaggttgtactggatgttctagctggtgcaatc i ponAbe2.chr12 I 182 C 0 s rheMac2.chr11 260228 158 - 134511895 aggatgttctaactggttccgttcaacgttgtactggatgttctagttgcttctgttcaacgttgtactggatgttctagttgcttgtgttcaacgttgtactggatgttctagttggttctgttcagcatt-tactggatgttctagctggtgcagtc i rheMac2.chr11 I 34 C 0 s oryLat2.ultracontig25 73723 136 - 228504 AGCCCGGTCTAGAAGGTTCTGGTCTAGAAGGTTCAGTCCAGTCTAGAAGGTTCTGGTCTA---------GAAGGCTCTGGTCTAGAAGGTTCAGC------CCGG----TCTAGAAGGTTCTGTTCAAGAAGGTTCTGG----TCTACTAGGTTCAGCC i oryLat2.ultracontig25 C 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=196405.000000 s hg19.chrUn_gl000223 123113 407 + 180455 aagcaaaagaaaagaaagaaaaggaagcatccagattgg---aaaaaaaagtaaaattggctttattcacagatgacataatcctctatataaaaaatttctaggaatcaataataataataaaaccactgaaactaataaatgatgttagcatggtcaaagggtacaagatcaatatataaacactatacttctatatactagcagtgaataatcttaaaatgaagttaagtaaacaatttctttcacagcatcaaaaagaataaaatagtaatacatttaataaaagaagtaaaaatgtggccgggcacggtggctcatgcctgtaatcccagcactatgggaggctgaggctggtggatcacgatgtcaggagatcgagaccatcctggctaacatggtgaaacccc s panTro2.chr12 247212 407 - 135371336 aagcaaaagaaaagaaagaaaaggaatcatccagattgg---aaaaaaaagtaaaattggctttattcacagatgacataatcctgtatatagaaaatttctaggaatcaataataataataaaaccactgaaactaataaatgatgttagcatggtcaaagggtacaagatcaatatataaatactatacttctatatactagcagggaataatcttaaaatgaagttaagtaaacaatttctttcacagcatcaaaaagaataaaatagtaatacatttaataaaagaagtaaaaatgtggccgggcacggtggctcatgcctgtaatcccagcactatgggaggctgaggctggtggatcacgatgtcaggagatcgagaccatcctggctaacatggtgaaaccct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 287673 410 - 136387465 aagcaaaagaaaagaaagaaaaggaagcatccagattggaaaaaaaaaaagtaaaattggctttattcacagatgacatgatcctgtatatagaaaatttctaggaatcaataataataataaaactactgaagctaataaatgatgttagcatggtcaaagggtacaagatcaatatataaacactgtacttctatatactagcagtgaataagcttaaaatgaagttaagtaaacaatgtctttcacagcatcaaaaagaataaaatagtaatacatttaataaaagaagtaaaaatgtggccgggcccggtggctcatgcctataatcccagcactttgggaggctgaggcgggtggatcacgaagtcaggagatcgagaccatcctggctaacacggtgaaacccc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 260386 391 - 134511895 aagcaaaagaaaagaaagagaagaaagcatccagattgg-----aaaaaagtaaaactgcctttatttacagatgacaggattctgtatatagaaaatttcaaggaatcaatgataataataaaactactgaaactaataaaagatgttagcatggtcaaaggttacaagatcaatatataaacactatacttctatatactagcaatgaataatatta----------aagttaacaa----tttcacaccatcaaaaagaataaaatagtaacaaatttaataaaagaagtaaaaatgtggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcagatggatcgcgaggtcagaagattgagaccatcctggccaacacagtgaaacccc i rheMac2.chr11 C 0 I 5208 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=718786.000000 s hg19.chrUn_gl000223 123520 2710 + 180455 gtcactactaaaaatacaaaaattagccaggcatggtggcaggcgactgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctggcaacagagcgtgactccgtctcaaaaaaaataataaaataaaaaataaaaaaggaagtacaaacttgtatgttggaaactacaaaacattactcagagatattaacaaatatttaaataaacaaagacatttcatattagtggattgaaaggctgaatactatcaatatggcaattctcctcacattgatctatgaattaaatgcaattcctgtcaaaatcccaccagactttttggtaaaaattggcaagctgaacataaaatttataatgacatgcaaagaacatagaatagcaaaacaattttgaaaaagaataaagttgtaagacttacactacttgattttaaatttgctataaagccacagtgatcaagacagtgtgatattagcaagaggataagtaaatagatcaatggaaaataactaaggatctagaaatacattgtaacatttatggccaattaatttttgacatagttacccagataattcaatgat-gaaaggtagactttagtaaatgattctgggtaaatggatgcctatatgccaaaggaggagaaggagaagacttgccttacacgtcatacatgaaaattagctgaaaacgggtcagagacctaaaagtaagagctaaaactataatacaatagaaaattgttgtaaatttgggttgggtaaagagattccagatataacaacaaaagcatgatccatgaaataaaagcattgataaattgaactttgtcaatatataaaaacttttgtttcaaaagacagtatgaagaaagtgagaagacaagccacagtctaaaagaaaatatttgcaaatcatttatctgataaaagacttgtattcagaacacttatgactcaataataagacaagcaacccaattttgcaaatgagcaaaagatctga--atatatatatatttttttcaccaaagaagctacagaaatggctaataagcacatacaaagatgctcaacgtcattattcattagggaacagcaaagttaaccacaatgagataccagtaaaaattcaatagaatggctataataagaaaaacagacaatacctagtgtaggcaagtatgtggagaaacgagccttcatgctttgctagtgagatgtaaaaatagcagtcactttggagaacagtttgaccattacttaaaaagttaaccataaacttaccgcatgactctgcaatgctacttctagatagctaagag-aaaatgaaaacttatgtctgtataaagtcgtttatgataatgtttatagcaatattattattattattattattattatta---------------------ttattttgagacggagtctcactctg--gcccaggctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccatgcctagctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgatctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccgaccagcaatattatttataatagccagaaactggaaacaacccaaaatgtctatcaactgctgactggataaagaaaagtgaaagcaactcaaatgtccatcaaatgatgcctggataaacaaacgtggtatagccataacgatggaatactgttcagcaattagaagaggggggaagtgctgatacatgcgatgtgaataaacctcaaaaacatgatgctgatgtcaagaagctagacagaaaagtcatcgcatgtatgattttgtggatataaaatgtctagaaaatgcaaatttgtagagtgaaaaatcacatcagtagttgcctaaggataggagtaggaacaggggttaaatgtaaatgggcataaagaactttggtaatgaagatgttctaaggctgcattgtggtcatggtagtaaaactctatgaatttactagtatcactgaattgaatacttacaatcgacacattttgtggcatgtgaattgtatttcaataaaactTAATTAAGGCCACTGAGTTTGACTATTggaaatgagagagataaaagcagaaataaatgaggtcgaaagcagaacaacagcagaactaataaataaaaacatttgtttttgaagaacgttaacaaaatagaaaactcggtgttctaatccagcaaaaagagaaaaagtacaaatatacaaaataagacatacaaagaggaaataactactgaaacaaaagatagatgtttttt-aaatcataaaagacgtttttgcccaactctaggcaaaaacattttgaagacctagatgaaatgattaaattcttaggaaaattgaattttccaagatttacctcagaagactcaacagcctacttttcatcaaataaacttgtgaagaaccaccccacaaaaaagtaacagattttgatggtttcataggaaaatgctgccaaacttcaaagaccagata s panTro2.chr12 247619 2713 - 135371336 gtctttactaaaaatacaaaaattagccaggcatggtggcaggcgactgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctggcgacagagcgtgactccatctc-aaaaaaataataaaataaaaaataaaaaaggaagtacaaatttgtatgttggaaactacaaaacattactcagagatattaacaaatatttaaataaacaaagacatttcatcttagtggattgaaaggctgaatactatcaatatggcaattctcctcacattgatctataaattaaatgcaattcctgtcaaaatcccaccagactttttggtaaaaattggcaagctgaacgtaaaatttataatgacatgcaaagaacatagaatagcaaaacaattttgaaaaagaataaagctgtaagacttacactacttgattttaaatttgctataaagccacagtgatcaagacagtgtgatattagcacgaggataagtaaatagatcaatggaaaataactaaggatctagaaatacattgtaacatttatggccaattaatttttgacacagttacccagataattcaatgat-gaaaggtagactttagtaaacgattctgggtaaatggatgcctacatgccaaaggaggagaaggagaagacttgccttacacgtcatacatgaaaattagctgaaaacgggtcagagacctaaaagtaagagctaaaactataatacaatagaaaattgttgtaaatttgggttgggtaaagagattccagatataacaacaaaagcatgatccatgaaataaaagcattgataaatggaactttgtcaatatataaaaacttttgtttcaaaagacagtatgaagaaagtgagaagacaagccacagtctaaaagaaaatatttgcaaatcatttatctgataaaagacttgtattcagaacacttacaactcaataataagacaagcaacccaattttgcaaatgagcaaaagatctgaatatatatatatatttttttcaccaaagaagctacagaaatggctaataagcacatacaaagatgctcaacatcattattcattagggaatagcaaagttaaccacaatgagataccagtaaaaactcaatagaatggctataataagaaaagcagacaatacctagtgtaggcaagtatgtggagaaacgagccttcatgctttgctagtgagatgtaaaaatagcagtcactttggagaacagtttgaccattacttaaaaagttaaccataaacttaccacatgactctgcaatgctacttctaggtatctaagagaaaaatgaaaacttatgtctgtataaagtcgtttatgataatgtttatagcaatattattattattattattattattatta---------------------ttattTCgagatggagtctcactctgtcgcccaggctggagtgcagtggtgtgatctcggctcactacaagctccacctcccgggttcacgccattctcctgcctcagcctcctgagtagttgggactacaggcgccctccaccatgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagctaggatggtctcgatctcctgatctcgtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccactgcacccaaccagcaatattatttataatagccagaaactggaaacaacccaaaatgtctatcaactgctgactggataaagaaaagtgaaagcaactcaaatatccatcaaatgatgcctggataaacaaacgtggtatagccat-acgatggaatactgttcagcaattagaagaggggggaagtgctgatacatgcgatgtgaataaacctcaaaaacatgatgctgatgtcaagaagctagacagaaaagtcatcacatgtatgattttgtggatataaaatgtctagaaaatgcaaatttgtagagtgaaaaatcacatcagtagttgcctaagaataggagtaggaacaggggttaaatgtaaatgggcataaagaactttggtaatgaagatgttctaaggctgcattgtggtcatggtagtaaaactctatgaatttactagtatcactgaattgaatacttacaatcgacacattttgtggaatgtgaattgtatttcaataaaacttttTTAAGGCCACTGAGTTTGACTATTggaaatgagagagataaaagcagaaataaatgaggtcgaaagcagaacaacagtagaactaataaataaaaacatttgtttttgaagaacgttaacaaaatagacaactcggtattctaatccagcaaaaagagaaaaagtacaaatatacaaaataagaaatacacagaggaaataactactgaaacaaaagatagatgtttttt-aaatcataaaagacgtttttgcccaactctaggcaaaaacattttgaagacctagatgaaatgattaaattcttaggaaaattgaattttccaagatttacctcagaagactcaacagcctacttttcatcaaataaacttgtgaagaaccaccccacaaaaaagtaacagattttgatggtttcataggaaaatgctgccaaacttcaaagaccagata i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 288083 2723 - 136387465 gtccctactaaaaatacaaaaattagccaggcatggtggcaggcgcctgtagttccagctactcaggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagattgcgctactgcattccagcctggcgacagagcgtgactctgtctc-aaaaaaataataaaataaaaaataaaaaaggaagtacaaatttgtgtattggaaactacaaaacattactcagagatattaacaaatatttaaataaatgaagacatttcatcttagtggattgaaaggctgaatactatcaatatggcaattctcctcacattgatctataaattaaatgcaattcctgtcaaaatctcaccagactttttggtaaaaattggcaagccgaacataaaatttataatgacatgcaaagaacatagaatagcaaaacaattttgaaaaagaataaagttggaagacttacactacttgattttaaatttgctataaagccacggtgatcaagacagtgtgatattagcacgaggataagtaaatagatgagtggaaaataactaaggatctagaaatacattgtaacatttacggccaattaatttttgacacagttacccagataattcaatgataaaaaggtagactttagtaaatgattctgggtaaatggatgcctacatgccaaaggaggagaaggagaagacttgtcttacacgtcatacatgaaaattagctgaaaacaggtcagagacctaaaagtaagagctaaaactataatacaatagaaaattgttgtaaatttgggttgggtaaagagattccagatataacaacaaaagcatgatccatgaaataaaagcattgataaattgaactttgtcaatatataaaaacttttgtttcaaaagacagtatgaagaaagtgagaagacaagccacagtctaaaagaaaatatttgcaaatcatttatctgataaaagacttgtattcagaacacttatgactcaataataagacaagcaacccaattttgcaaatgagcaaaagatttga--atatatatata----tttcaccaaagaagctacagaaatggctaatgagcacatacaaagatgctcaacatcattattcattagggaacag-aaagttaaccacaatgagataccagtaaaaactcaatagaatggctataataagaaaaacagacaatacctagtgtaggcaagtatgtggagaaacgagccttcaagctttgctactgagatgt-aaaatggcagtcactttggagaacagtttggccattacttaaaaagttaaccataaacttaccacatgactctgcaatgctacttctaggtatctaagag-aaaatgaaaac--atgtctgtataaagtcgtttatgataatgtttatagcaatattattattattattattattattattattattgttgttgttgttgttgttattttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccgggttcacgccgttctcctgcctcagcctcccgagtagctgggactacaggcgccctccaccatgcccagctaattttttgtattttcagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggccccccaaagtgctggaattacaggcgtgagccaccgcacctgaccagcaatattatttataatagccagaaactggaaacaacccaaaatgtctatcaac--ctgactggataaacaaaagtgaaagcaactcaaatatccatcaaatgatgcctggataaataaacgtggtatagccat-acgatggaatactgttcagcaattagaagaggggggaagtgctgatacatgcgatgtgaataaacctcaaaaacatgacgctgatgtcaagaagccagatacaaaagtcatcacatgtatgattttgtggatataaaatgtctagaaaatgcaaatttgtagagtgaaaaatcacatcagtagttgcctaagcataggagtaggaacaggggttaaatgtaaatgggcataaagaactctggtaatgaagatgttctaaggctgcattgtggtgatggtagtaaaactctatgaatttactaatatcactgaattgaatacttacaatcgatacattttgtggaatgtgaattgtatttcaataaaacttttTTAAGACCACTGAGTTTGACTATTggaaatgagagagataaaagcagaaataaatgagattgaaagcagaacaacagtagaactaataaataaaaacatttgtttttgaagaaggttaacaaaatagaccactcggtattctaatccagcaaaaagagaaaaagtacaaatatacaaaataagaactacaaagaggaaataactactgaaacaaaagatagatgttttttaaaatcataaaagacgtttttgcccaactctaggcaaaaacattttgaagacctagatgaaatgattaaattattaggaaaattgaattttccaagatttacctcagaagactcaacagcctacttttcatcaaataaacttgtgaagaaccaccccacaaaaaagtaacagatttggatggtttcataggaaaatgctgccaaacttcaaagaCCAGATA i ponAbe2.chr12 C 0 I 324 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=18391.000000 s hg19.chrUn_gl000223 126230 203 + 180455 atcccaatgctcataaattattccagaataaataatacttctggccgggcgtgatggctcacacctgtaatcccagtactttcagaggccgaggcagacggatcacgacgtcaggagatcaagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggtgggcacctgtaa s panTro2.chr12 250332 203 - 135371336 atcccaatgctcataaattattccagaataaataatacttctggccgggcatgatggctcacgcctgtaatcccggtactttcggaggccgaggtagacggatcacgaagtcaggagatcaagaccatcctggctaacgtggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggtgggcacctgtaa i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 290806 324 - 136387465 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=1331263.000000 s hg19.chrUn_gl000223 126433 5012 + 180455 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagtcggaagttgcagtgagccgagatcgcgccactgcactccagcctggcaacagaatgagactccgtttcaaaaaagaacaaacaaacaaacaaaaaaacttccgaatttctggagcaattataacaatactatgttaacctaaaaaagtatcacagaaaatgaaaacaaaaattgatttcacttgtcaacagtgatgcaaatatcttaaGTCATAAACagagtgaggtattgaagtcttcaattattactctagaatattgctctcatgaattctgtcagtttttgctttatatatttttatggtctgttattagatatataagta-ttataatgtcctatgttgaatattttattaatctacaaggttattctttgtcttgtgatctgttttggtttaaaggctattttgtctgatgcaaccatcactgctttctttgggatatttacatggaatatctttttcaatcctttcactttctactatttgtgtttttggatgtaaagtcagtctcttataacagcatatagtgg-aattatgtatttttattcaatcttcaaatgtaagtcttttgattgaaaagtttatcatttacatgtaaattaactactaatgagga-----agttttttttttgagatggagtttcgctctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaacctccgcctcccgggttcaagtgattctactgcctcagcctcccgagtagctgggactacagatgcgtgccaccacgcccagctaatgtttgcatttttaacagagacgagggtttcaccatattggtcaggctggtctcgaactcctgacctcaggtgatccacctgtctcagcctcccaaaatgctgggattacaggtgtgagccaccgtgcctggccggaagatattatttctgtcattttgctttgtttttgaagtggcttataagcgtttttatctctaatttcctgcattgctgtcttcttttgtgtttatttatctattttttttgagagggagttttgctcttgttgctcaagctggaatgcaatggcacaatctcgactcactgcaacctctgcctcccgggttcaagcaactctcctgcctcagcctcctgagtagctgggattacaggcgcacaccaccatgcccggctaattttttgtattgttagtagaaacagggtttcaccatgttagccaggctggtctcaaactcctgacctcaggtgatccacccaccttggtctcccaaagtgctgggattacaggggtgagccactgcgcccgacctagttgattttttatagtggaatgtttaaattcctttctgatgttcttttgtgtctgttctatagctattttttgtggttgccatgaggagtacatttaacatcggaaacgataacgctctaatttgaatttttaccagtttaactttaataacaggtgagaactctgctcctttaaagctctgctcccacccctttgatttgctgatgtcacaaaattacatccttatacattgcatgccccaaaacatacattaatccttcttttaaatgcattaatctcttaaattatgtt----taaaaaaaaagaaaatgtggagttataaaccagagttacaataatgctatcgtttggtctaatgattattTTATGGTCTACTCAAA-tttttttttcttttgagacagtgtctcactctgtcacccaggctggagtgcagtagcacaaacatggctcaccgcagcctcaaactcctgggttctcccaagtcagcctcccaagtagctgagactataggcatgtgccaccatgcctgtagggtctagccctacagggtctgtgggattttctccccatgtgcggagacgagagatcatagaaataaagacacaagacaaagagatagaagaaaagacagcagggcccggggggccactaccgccaagacgcggagaccggtagtggccccgaatgcctggctgtgctgttatttattggatacaagacaagggggcagggtaaggagcgtgagccatctccaatgatagctaaggtcatgtgggtcacgtgtccactggacagggcacctttccctgtttggcagccgaggcggaga-----aagagacagcttacgccattacttctgcatttcaaagacttttagtactttcactaattctgctactgctatctagaaggcagatccaggtgtacagggtggaacatgaaagtggaccaggagcgtgaccgcagaagcacagcatcacagggagacggtcaggcctccggatgactgcgggcgggcttgactgatgtcaggacctccacaagaggtggtggagcagagtcttctctacctcccccggagaaagggagattccctttcccggtctgctaagtaaccggtgccttttctaagcactgacgctaccgctagaccatggt-ccgcttggcaacgggcgtcttcccaggcgctggcttcaccgctagacccaggagccctctggtggccctgtccgggcataacaggaggctcgcacttgtcttctggtcacttctcactgtgtcccctcggctcctatctctgtatggcctggtttttcctaggttatgattgtagagcaaggattattataatattggaataaaaagtaattgctacaaact-gtgattaatgatattcatatataatcatatctatgatctatatctagtataactattcttattttatatattttctttattatactggaacaggtcgtgcccttggtctcttgcctcagcacctgggtggcttgccgcccacaCATGCCCGGCTAATtttttgtattttttgtagagacggggtttcaccatgttgcccagactggtctccaactcctggactcaagcaatccacccgcctttgcctcccaaagtggagattacaagtgtgagccaccatgcccggccaaa-ttttctattctacatgactcagtcttgttaagttatatgtttccaggaatttattcatttttttctgggttatttacatttttttgctgtacattttcttgtagtattctctcatgatcctttgtatgtctgtggtatcagttataatgtctcctctttcatttctgattttgagtcatttctccttttttcttagtctagctaaaggattgtcaattttatttatcttttcaaaaaccaactcttagttttgttgatctttctatcatttttatagttctatttcatttatttctgctctgatgtttgctatgtccttacttctactaacattgggtttaatttgttcttttcctagtttctggaggtgtaatgctagcttgtttataatcttttttagcataggcatttagcactataatgatccctcttagaactgcttttgctgcattccataagttttcatatgctgtgtttccattttttcaagtcttaagataattctaaatttcccttttgatttcttcccattggttgacccattggttgttcaggagtatgttgtttaatttccacatattcgtggtttctatttgcatagaacattttattctattccttcactttcagcctatgtgtatccttaaaactgaagtatgtctcttataggtagcgtatggttgggacttgtttgggtttttttctaatccacttagctactgtctgtcttttgactagataatttaattcatttatattcaaggtaattattgatgggtaaggacttactatggtcattatgttaattgtttttctgactgttttatagatccctttgtcctttcctcctcccttgctgttttcctttgtgatttgatcattttctctaggtgatatgctttggttcatttctcttcatttttcatgtatctaccataggtttttgtgttgtagttacaatgaggctcacgtataacatagttataatagtctattttaagcttataacaacttaactttgcatataaaaaccacatctttactcctcctctattttatgtttatgatattacaatttacatctttttatattgtgtatctactaacaaatggttgtagctatagttatttttagtagttttgttggctgggcacaatggctcacacctgtaatcccagcactttgggaggccgaggtgtgtagatcgcctgaggtcaggagtttgagaccagcctggccaacatagggaaacaccgtctctactaaaaatacaaaaaatcagctgggcgtggtcgtgggcacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgagagacaaaggttgcagtgagctgagatcgtgccactgcactccagcctgggcaacaagagcaaaactccctctcaaa--aaaaaattaatttgtcttttaatctttatactagaaatataagtgatttacagatcaccattatagcattagagtattctgaatatgactgtatgcttttactagttttatactttcatatgttttcatgttactaattagcaacttcacttcagcttaaagaacaccctttagcatttctagtaaagcaggcctagtggcgatgtactccctcagcttttgtttgggaaaatctttctctctctttcatttctgaaagacagctttagggataaagtattcttgattagcagtgtatttttctttcagcccttggaaaatatcatcccactccctcctagcctgcaaagtttctgctgagaaatccactgataatccttcgtgattttctcttgctactttcaagatagtctttgcctttaatttttttttaagcagggactgctctgtcacccagatggaagtgcagtggcaagatcctgaatcgctgcacctcaacatcctggggtcaagtgatcctca-cctcaacatcctggggtcaagtgatcctatca s panTro2.chr12 250535 4990 - 135371336 tcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagtcggaagttgcagtgagccgagatcgcgccactgcactccagcctggcaacagaacgagactccgtttcaaaaaagaacaaacaaacaaacaaaaaaacttccgaatttctggagcaattataacaatactatgttaacctaaaaaagtatcacagaaaatgaaaacaaaaattgatttcacttgtcaacagtgatgcaaatatcttaaGTCATAAACagagtgaggtattgaagtcttcaattattactctagactattgctctcatgaattctgtcagtttttgctttatatatttttatggtctgttattagatatataagta-ttataatgtcctatgttgaatattttattaatctacaaggttattctttgtcttgtgatctgttttggtttaaaggctattttgtctgatgcaaccatcactgctttctttgggatatttacatggaatatctttttcaatcctttcactttctactatttgtgtttttggatgtaaagtcagtctcttataacagcatatagttg-aattatgtatttttattcaatcttcaaatgtaagtcttttgattgaaaagtttatcatttacatgtaaattaactactaaagaggatttttttttttttttttgagacagagtttcgctctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaacctccgcctcccgggttcaagtgattctactgcctcagcctcccgagtagctgggactacaggtgcgtgccaccacgcccagctaatgtttgcatttttaatagagacgagggtttcaccatattggtcaggctggtctcgaactcctgacctcaggtgatccacctgtctcagcctcccaaaatgctgggattacaggtgtgagccaccgtgcctggccggaagatattatttctgtcattttgctttgtttttgaagtggcttataagcgtttttatctctaatttcctgcattgctgtcttcttttgtgtttacttatctattttttttgagagggagttttgctcttgttgctcaagctggaatgcaatggcacgatctcgactcactgcaacctctgcctcccgggttcaagcgactctcctgcctcagcctcccgagtagctgggattacaggcgcacaccaccatgcccggctaattttttgtattgttagtagaaacggggtttcaccatgttagccaggctggtctcaaactcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccgacctagttgattttttatagtggaatgtttaaattcctttctgatgttcttttgtgtctgttctatagctattttttgtggttgccatgaggagtacatttaacatcggaaacgataacgctctaatttgaatttttaccagtttaactttaataacaggtgagaactctgctcctttaaagctctgctcccacccctttgatttgctgatgtcacaaaattacatccttacacattgcaggccccaaaacatacattaatccttcttttaaatgcattaatctcttaaattatgttaaaaaaaaaaaaaaggaaatgtggagttataaaccagagttacaataatgctatcgtttggtctaatgattattTTATGGTCTACTCAAA-tttttttttcttttgagacagtgtctcactctgtcacccaggctggagtgcagtagcacaaacatggctcaccgcagcctcaaactcctgggttctcccaagtcagcctcccaagtagctgagactataggcatgtgccaccatgcctgtagggtctagccctacagggtccgtgggattttctccccttgtgcggagacgagagatcatacaaataaagacacaagacaaagagatagaagaaaagacagcagggccc-gggggccactaccgccaagacgcggagaccggtagtggccccgaatgcctggctgtgctgttatttattggatacaagacaagggggcagggtaaggagcgtgagccatctccaatgatagctaaggtcacgtgggtcacgtgtccactggacaggggacccttccctgtttggcagccgaggcggaga-----aagagacagcttacgccattacttctgcatttcaaagacttttagtactttcactaattctgctactgctatctagaaggcagagccaggtgtacagggtggaacatgaaagtggaccaggagcgtgaccgctgaagcacagcatcacagggagacggtcaggcctccggatgactgagggcgggcttgactgatgtcaggacctccacaagaggtggtggagcagagtcttctctacctcccccggagaaagggagactccctttcccggtctgctaagtaaccggtgccttttctaagcactgacgctaccgctagaccatgat-ccgcttggcaacgggcgtcttcccaggcgctggcgttaccgctagacccaggagccctctggtgg-cctgtccgggcataacagaaggctcgcacttgtcttctggtcacttctcactgtgtcccctcggctcctatctctgtatggcctggtttttcctaggttatgattgtagagcaaggattattataatgttggaataaaaagtaattgctacaaactaatgattaataatattcatatataatcatatctatgatctatatctagtgtaactattcttattttatatattttctttattatactggaacaggtcgtgcccttggtctcttgcctcagcacctggttggcttgccgcccacacatgcccggctaattttttgtattttttgtagagacggggtttcaccatgttgcccagactggtctccaactcctggactcaagcaatccacccgcctttgcctcccaaagtggagattacaggtgtgagccaccatgcccggccaaa-ttttctattctacatgactcagtcttgttaagttatatgtttccaggaatttattcatttttttctgggttatttacatttttttgctgtacattttcttgtagtattctctcatgatcctttgtatgtctgtggtatcagttataatgtctcctctttcatttctgattttgagtcatttctccttttttcttagtctagctaaaggattgtcaattttatttatcttttcaaaaaccaactcttagttttgttgatctttctatcatttttatagttctatttcatttatttctgctctgatgtttgctatgtccttacttctactaacattgggtttaatttgttcttttcctagtttctggaggtgtaatgctagcttgtttataatcttttttagcataggcatttagcactataatgatccctcttagaactgcttttgctgcattccgtaagttttcatatgctgtgtttccattttttcaagtcttaagataattctaaatttcccttttgatttcttcccattggttgacccattggttgttcaggagtatgtagtttaatttccacatattcgtggtttctatttgcatagaacattttattctattccttcactttcagcctatgtgtatccttaaaactgaagtatgtctcttataggtagcgtatggtcgggacttgtttgggtttttctctaatccacttagctactctctgtcttttgactagataatttaattcatttatattcaaggtaattattgatgggtaaggacttactatggtcattatgttaattgtttttctgactgttttatagatccctttgtcctttcctcctcccttgctgttttcctttgtgacttgatcattttctctaggtgatatgctttggttcatttctcttcatttttcatgtatctaccataggtttttgtgttgtagttacaatgaggctcacatataacatagttataatagtctattttaagcttataacaacttaactttgcatataaaaaccacatctttactcctcctctattttatgtttatgatattacaatttacatctttttatattgtgtatctactaacaaatgattgtagctatagttatttttagtagttttgttggctgggcacaatggctcacacctgtaatcccagcactttgggaggccgaggtgtgtagatcacctgaggtcaggagtttgagaccagcctggccaacatagggaaacaccgtctctactaaaaatacaaaaaatcagctgggcgtggtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgagagacaaaggttgcagtgagctgagatcgtgccactgcactccagcctgggcaacaagagcaaaactccctctcaaa--aaaaaattaatttgtcttttaatctttatactagaaatataagtgatttacagatcaccattatagcattagagtattctgaatatgactgtatgcttttactagttttatactttcatatgttttcatgttactaattagcaacttcacttcagcttaaagaataccctttagcatttctagtaaagcaggcctagtggcgatgtactccctcagcttttgtttgggaaaatctttctctctctttcatttctgaaagacagctttagggataaagtattcttgattagcagtgtttttttctttcagcccttggaaaatatcatcccactctctcctagcctgcaaagtttctgctgagaaatccactgataatccttcgtgattttctcttgctactttcaagatagtctttgcctttaAtttttttttaagcagggactgctctgtcacccagatggaagtgcagtggcaagatcctgaatcgctg------------------------------ca-cctcaacatcctggggtcaagtgatcctatca i panTro2.chr12 C 0 I 130 s ponAbe2.chr12 291130 4982 - 136387465 tcccagctactcaggaggctgaggcaggagaatcgcttgaacctaggagtcagaagttgcagtgagctgagatcgcagcactgcactccagcctggcaacagagcaagactccgcttcaaaaaagaacaaacaaaca---aaaaaaaTTTCCAAATTTCTGGAGCAATTATAACAATACTATGTAAACCTAAAATGGTATCACAGAAAATGAAAACAAAAATTGATTTCACTTGTCAACAGTGATGCAAATATCTTAAGTCATAAACagagtgaggtattgaagtcttcaattattactctagaatattgctcccatgaattctgtcagtttttgctttatatatttttatggtctgttattagatatataagtatttataatgtcctatattgaatattttattaatctacaaggttattctttgtcttgtcatctgttttggtttaaaggctattttgtctgatgcaaccatcactgctttctctgggatatttacatggaatatctttttcaatcctttcactttctactatttgtgttttcggatgtaaagtgagtctcttataacagcatatagttgaaattatgtatttttattcaatcttcaaatgtaagtcttttgattgaaaagtttatcatttacatgtaaattaactaataatgaggaagtttttttttttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaacctccgcctcccgggttcaagtgattctactgcctcagcctcccgagtagctgggactacaggtgcatgccaccacgcccagctaatgtttgcatttttaatagagacgggggtttcaccatattggtcaggctggtctcagactcctgacctcaggtgatccacctgtctcagcctcccaaaatgctgggattacaggcgtgggccacggcgcctggccggaagatattatttctgtcattttgctttgtttttgaagtggcttataagcgttttcatctctaatttcctgcattgctgtcttcttttgtgtttatttacctatttttttttagagggagttttgctcttgttgctcaagctggaatgcaatggcacgatctcgactcactgcaacctttgcctcctgggttcaagcgactctcctgcctgagcctcctgagtagctgggattacaggcgcacaccaccatgcccggctaattttttgtattgttagtagaaacggggtttcaccatgttagccaggctggtctcaaactcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagccactgctcccggcctagttgattttttatagtggaatgtttaaattcctttctgatgttcttttgtgtctgttctatagctattttttgtggttgccatgaggagtacatttaacatcagaaacgataacgctctaatttgaatttttaccagtttaacttcaataacatgtgagaactctgctcctttaaagctctgctcccacccctttgatttggtgatgtcacaaaattacatccttatacattgcatgccccaaaacatatattaatccttcttttaagtgcattaatctcttaaattatgtt----taaaaaaa----aaatgtggagttataaaccagagttacagtaatgctatcgtttggtctaatgattattTTATGGTCTACTCAAAttttttttttcttttgagacagtatctcactctgtcacccaggctggagtgcagtagcacaaacatggctcaccacggcctcaaacccctgggttctcccaagtcagcctcccaagtagctgagactataggcatgtgccaccatgcctgtagggtctagccctacagggtctgtgggattttctccccatgtgcggagacgagagattgtagaaataaagacacaagac--agagatagaagaaaagacagcagggcccggtggaccactaccaccaagacgcggagaccggtagtggccccgaatgcctggctgtgctgttatttattggacacaagacaagggggcagggtaagaagtgtgagccatctccaatgataggtaaggtcatgtgggtcacctgtccactggagagggggctcttccctgtttggcagctgaggtggagagacagaagagacagcttacgccattacttctgcatttcaaagacttttagtactttcactaattctgctactgctatctagaaggcagagccaggtgtacagggtggaacatgaaagtggaccaggagcgtgaccactgaagcacagcatcacagggagacggtcaagcctccggatgactgcaggcgggcttgactgatgtcaggacctccacaagaggtggtggagcagagtcttctctacctcccccggggaaagggagactccctttcctggtctgctaagtaactggtgccttttctaggcactgacgctaccgctagaccaaggtcccgctaggtaacgggcgtcttcccaggcgctggcattaccgctagacccaggagccctctggtggccctgtctgggcataacagaaggctcgcacttgtcttctggtcacttctcactgtgtcccctcagctcctatctctgtatggcctggtttttcctagg-tataattgtagagcaaggattattataatattggaataaaaagtaattgctacaaactaatgattaataatattcatatataatcatatctatgatctatatctagtataactattcttattttatatattttctttattatactggaacaggtcgtgcctttggtctcttgcctcggcacctgggtggcttgccgcccacacatgcccggctaatttttt-tattttttgtagagacagggtttcaccatgttgcccagactggtctccaactcccggactcaagcaatccacccgcctttgcctcccaaagtggagattacaggtgtgagccaccatgcccggccaaatttttctattctATatgattcagtcttgttaagttatatgtttccaggaatttattcatttttttctgggttattta---ttttttgctgtacattttcttgtagtattctctcatgatcctttgtgtgtctgtggtatcagttataatgtctcctctttcatttctgatgttgagtcatttctccttttttcttagtctagctaaaggattgtcaattttatttatcttttcaaaaaccaactcttagttttgttgatctttctatcatttttatagttctatttcatttatttctgctctgatgtttgctatgtccttacttctactaacattgggtttaatttgttcttttcctagtttctggagctgtaatgctagcttgtttataatcttttttagcataggcatttagcactataatattccctcttagcactgcttttgctgcattccgtaagttttcataagctgtgtttccatttttttaagtcttaagataattctaaatttcccttttgatttcttcccattggttgacccattggttgttcaggagtatgttgtttaatttccacatattcatggtttctatttgcatagaacattttattctattccttcactttcagcctatgtgtatccttaaaactgaagtatgtctcttataggtagcatatggttgggccttgtttggggatttttccaatccacttagctactgtctgtcttttgactagataatttaattcatttatattcatttatacccttgatgggtaaggacttactatggtcattatgttaattgtttttctgactgttttatagatccctttgtcctttcctcctcccttgctgttttcttttgtgatttgatcattttctctaggtgatatgctttggttcatttctcttcatttttcatgtatctaccataggtttttgtgttgtagttacaatgaggctcacatataacatagttataatagtctattttaagcttataacaacttaaatttgcatataaaaactacatctttactcctcctctattttatgtttatgatattacaatttacatctttttacattgtatatctactaacaaatggttgtagctatagttatttttagtagttttgttggctgggcatgatggctcacacctgtaatcccagcactttgggaggctgaggtgtgtagatcacctgaggtcaggagtttgagaccagcctggccaacatagggaaacaccgtctctactaaaaatacaaaaaattagctgggtgtggtggtgggcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccgagagacaaagattgcagtgagctgagatcgtgccactgcactccaacctgggcaacaagagcaaaactccctctcaaaagaaaaaaaaaaattgtcttttaatctttatactagaaatataagtgatttacacatcaccattatagcattagggtattctgaatatgactgtatgcttttactagttttatactttcatatgttttcatgttactaattagcaacttcacttcagcttaaagaacaccctttagcatttctagtaaagcaggcctagtggtgatgtactccctcagcttttgtttgggaaaa----tctctccctttcatttctgaaagacagctttagggataaagtattcttgattagcagtgtttttttctttcagcccttggaaaatatcatcccactctctcctagcctgcaaagtttctgctgagaaatccactgataatccttagtgattttctcttgctactttcaagatagtctttgcctttaa-ttttttttaagcagggactgctctgtcacccagatggaagtgcagtggcaagatcctgaatcactg------------------------------cagcctcaacatcctggagtcaagtgatcctatca i ponAbe2.chr12 I 324 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=250349.000000 s hg19.chrUn_gl000223 131445 955 + 180455 cctcagcctcccaattagctggcactacaagcacatgccatcacttctggctaatttttatgtgtggagacatggtctcactatgttcctcagggtggcttccaactcctgggctcaagtgatccttctgcctcagccttccaaagtgctgagaatacaagtatgagccaccacgcctggcctgtctttgatttttgatggtttgattataatatgtcttggtgatattttct-acctgattagagacttttgagcttcatgcacataaatgttcatatctatccccagacttgggacattttcagccattaGCTGCAAACCTTGTGGGGCATTGTTGGATTCCCCTCTTTTTGTGGCTTCTTATCATCTTCCCGATTGCTCCAAAACCTGTCCTAGCTTATCACCCTAGATGTTCAAAAGATATTTGGTTTGTAAAGTGTCTTTATTTATTCTCCCATCTAGTTTCCTCTCCAGGTTGGCTACCCTGTTTCTTCATTTACTGTGCTATCACCCATAGTGTTTCTTGTTGACATGCTTTAGGTTTTGAATTTGTGAGTATGAATTCTTTCTAGTTTCTGTGATATTTTTCACTGTTTCTTCTTCCATTTGAACTTTCGTTTCATGAAATTAGAAAAACTCTATGAAATTTTCAGTAGG-ttttttaaagacagggtcccactctctcaccaaggctggagtgcagtggtgtgaccatagctcactgcagccataaactcttggactcaagcagtcctcccacctcagacttctgagcagctgggatgacaggcaatgccccaccaggcctggctaatttttaaaaattttttgtagaggcagagtctggctaagttgcccaggctggtcttgaagtcctcagttcaagcaatcctcccaccttcacctcccaaagtgctgggattacaggcatgag-cgccgtgcctggccTTGAGTA s panTro2.chr12 255655 931 - 135371336 cctcagcctcccaattagctggcactacaagcacatgccatcacttctggctAatttttatgtgtggagacatggtctcactatgttcctcagggtggcttccaactcctgggctcaagtgatccttctgcctcagccttccaaagtgctgagaatacaagtatgagccaccacgcctggcCtgtctttgatttttgatggtttgattataatatgtcttggtgatattttcttacctaattagagacttttgagcttcatgcacataaatgttcatatctatccccagacttgggacattttcagccattaGCTGCAAGCCTTGTGGGGCATTGTTGGATTCCCCTCTTTTTGTGGCTTCTTATCATCTTCCCGACTGCTCCAAAACCTGTCCTAGCTTATCACCCTAGATGTTCAAAAGATACTTGGTTTGTAAAGTGTCTTTATTTATTCTCCCATCTAGTTTCCTCTCCAGGTTGGCTACCCTGTTTCTTCATTTACTGTGCTATCACCCATAGTGTTTCTTGTTGACATGCTTTAGGTTTTGAATTTGTGAGTATGAATTCTTTCTAGTTTCTGTGATATTTTTCACTGTTTCTTCTTCCATTTGAACTTTCGTTTCATGAAATTAGAAAAACTCTATGAAATTTTCAGTAGG-ttttttaaagacagggtcccactctctcaccaaggct-------------------------cactgcagccttaaactcttgggctcaagcagtcctcccacctcagcctcctgagcagctgggatgacaggcaatgccccaccaggcctggctaatttttaaaaattttttgtagaggcagagtctggctaagttgcccgggctggtcttgaagtcctcagttcaagcaatcctcccaccttcacctcccaaagtgctgggattacaggcatgag-cgccgtgcctggccTTGAGTA i panTro2.chr12 I 130 C 0 s ponAbe2.chr12 296112 945 - 136387465 cctcagcctcccaattagctggcactacaagcacatgccatcacatctggctaattttta--tgtggagacatggtctcactatgttcctcaggctggcttccaactcctgggctaaagtgatccttctgccacagcctcccaaagtgctgagaacacaagtatgagccaccatgcctggcctgtctttgatttttgatggtttgattataatatgtcttggtgatattttcttacctgattagagacttttgagcttcatgcacataaatgttcatatctatccccggacttgggacattttcagccattaGCTGCAAGCCTTGTGGGGCATTGTTGGATTCCCCTCTTTTTGTGGCTTCTTAGCATCTTCCCGACTGCTCCAAAACCTGTCCTAGCTTATCACCCTAGATGTTCAAAAGATGTTTGGTTTGTAAAGTG-----------TCTCCCATCTAGTTTCCTCTCCAGGTTGGCTACCCTGTTTCTTCATTTACTGTGCTATCACCCATAGTGTTTCTTGTTGACATGCTTTAGGTTTTGAATTTGTGAGTATGAATTCTTTCTAGTTTCTGTGATATTTTTCACTGTTTCTTCTTCCATTTGAACTTTCGTTTCATGAAATTAGAAAAACTCTATGAAATTTTCAGTAGGtttttttaaagacagggtcccactctctcaccaaggctggagtgcagtggtgtgatcatagctcactgcagccttaaactcttggactcaagcagtcctcccacctcagcctcctgagcagctgggacaacaggcaatgccccaccaggcctggctaatttttaaaaattttttgtagaggcagagtctggctaagttgcccaggctggtcttgaagtcctcagttcaagcaatcctcctaccttcacctcccaaagtgctgggattacaggcatgagccactgtgcctggccTTGAGTA i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=315992.000000 s hg19.chrUn_gl000223 132400 581 + 180455 GAATTATATTGAATAGACAAGTTAACTTGACATTATTTACTCTTCCCATTAAAGTACATCAGAAGTTTCTGTTA-TTGTATATACATATGCCTCCTCCTGACTTCTTC-TTATTAAAATTTGGAGTCTTTACCCATTGCTTCAACTTCTACTCCCATTTTATTCCGAGAATCTAGCTTTTGCTCCCTGTATCCTACCAACAACATTCTTCACATATTCTACCAACAACATTCTCCTGAAAGACACCTTTGACTTTGAGGCAAATTTTAGAACCTCCACTTTTTCAGAGGTTGACATCTTCTCTTATAGCTTTTCATAATTGGCTTATTATTCACCCTCCTGCCTTTTGAATTGGGTCTTCTCTTTGTCTTCCACTGTCCTGTTTTACTTATTTAAGTTTTCTCTAAATTCTTTGATATCTTTGGTCTTGTTTCTGTATAGACATTCTTCATTCAGCAAAGTTATTTATTATTTCCATATTACTTACAATTTGTTAGGTTTTATAGCTGTGATGTTGCTATTTACCAGGTTTATAGGGATGAATAAAGTAGATTCTCAAGATTATGGTTTACAGAGAGCACTAg s panTro2.chr12 256586 581 - 135371336 GAATTATATTGAATAGACAAGTTAACTTGATATTATTTACTCTTCCCATTAAAGTACATCAGAAGTTTCTGTTA-TTGTATATACATATGCCTCCTCCTGACTTCTTC-TTATTAAAATTTGGAGTCTTTACCCATTGCTTCAACTCCTACTCCCATTTTATTCCGAGAATCTAGCTTTTGCTCCCTGTATCCTACCAACAACATTCTTCACATATTCTACCAACAACATTCTCCTGAAAGACACCTTTGACTTTGAGGCAAATTTTAGAACCTCCACTTTTTCAGAAGTTGACATCTTCTCTTACAGCTTTTCATAATTGGCTTATTATTCACCCTCCTGCCTTTTGAATTGGGTCTTCTCTTTGTCTTCCACTGTCCTGTTTTACTTATTTAAGTTTTCTCTAAATTCTTTGATATCTTTGGTCTTGTTTCTGTATAGACATTCTTCATTCAGCAAAGTTATTTATTATTTCCATATTACTTACAATTTGTTAGGTTTTATAGCTGTGATGTTGCTATTTACCAGGTTTATAGGGATGAATAAAGTAGATTCTCAAGATTATGGTTTACAGAGAGCACTAg i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 2 582 + 1554 GAATTATATTGAATAGACAAATTAACTTGACATTATTTACTCTTCCCATTAAAGTACATCAGAAGTTTCTGTTATTTGTATATACATATGCCTCCTCCTGACTTCTTC-TTATTAAAATTTGGAGCCTTTACTCATTGCTTCAACTGCTACTCCCATTTTATTCCGAGAATCTAGCTTTTGCTCCCTGTATCCTACCAACAACATTCTTCACATATTCTACCAACAACATTCTCCTGAAAGACACCTTTGACTTTGAGGCAAATTTTAGAACCTCCACTTTTTCAGAGGTTGACATCTTCTCTTATAGCTTTTCATAATTGGCTTATTATTCACCCTCCTGCCTTTTGAATTGGGTCTTCTCTTTGTCTTCCACTGTCCTGTTTTACTTATTTAAGTTTTCTCTAAATTCTTTGATATCTTTGGTCTTGTTTCTATATAGACATTCTTCATTCAGCAAAGTTATTTATTATTTCCATATTACTTACAATTTGTTAGGTTTTATAGCTGTGATGTTGCTATTTACCAGGTTTATAGGGATGAATAAAGTAGATTCTCAAGATTATGATTTACAGAGAGCACTAg i gorGor1.Supercontig_0087298 N 0 C 0 s ponAbe2.chr12 297057 582 - 136387465 GAATTATATTGAATAGACAAATTAACTTGATATTATTTACTCTTCCCATTAAAGTACATCAGAAGTTTCTGTTA-TTGTATATACATATGCCTCCTCCTGACCTCTTCTTTATTGAAATTTGGAGTCTTTACCCATTGCTTCAACTTCTACTCCCATTTTATTCCGAGAATCTAGCTTTTGCTCCTTGTATCCTACCAACAACATTCTCCACGTATTCTACCAATAACATTCTCCTGAAAGACACCTTTGACTTTGAGGCAAATTTTAGAACCTCCACTTTTTCAGAGGTTGACATCTTCTCTTATAGCTTTTCATAACTGGCTTATTATTCACCCTCCTGCCTTTTGAATTGGGTCTTCTCTTTGTCTTCCACTGTCCTATTTTACTTATTTAAGTTTCCTCTAAATTCTTTGATATCTTTGATCTTGTTTCTGTATAGACATTCTTCATTCAGTAAAGTTATTTATTATTTCCATATTACTTACAATTTGTTAGGTTTTATAGCTGTGATGTTGCTATTTACCAGGTTTATAGGGATGAATAAAGTAGATTCTCAAGATTATGGTTTAGAGAGAGCACTAg i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=86521.000000 s hg19.chrUn_gl000223 132981 125 + 180455 gggaaagag---aagcaagaaagaaagctttgaaagagcagccattgactttgaaggaaatccgggaaaggatggcatccaggaag-tgggagaagaaatgttttcaaggtggagagag------------------CTCCTGATAC s ponAbe2.chr12 297639 125 - 136387465 gggaaagag---gagcaagaaagaaagctttgaaagagcagccattgactttgaaggaaatccgggacaggatggcgtccaggaag-caggagaagaaacgttttcaaggtggagagag------------------ctcctgatac i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 584 125 + 1554 gggaaagag---aagcaagaaagaaagctttgaaagagcagccattgactttgaaggaaatccgggaaaggatgtcatccaggaag-tgggagaagaaatgttttcaaggtggagagag------------------CTCCTGATAC i gorGor1.Supercontig_0087298 C 0 C 0 s panTro2.chr12 257167 125 - 135371336 gggaaagag---aagcaagaaagaaagctttgaaagagcagccattgactttgaaggaaatccgggaaaggatggcatccaggaag-tgggagaagaaatgttttcaaggtggagagag------------------CTCCTGATAC i panTro2.chr12 C 0 C 0 s choHof1.scaffold_252582 1219 142 - 1977 GGAaaagagagaaagaaagaaagaaaACTTCgaaggcacagccattgatacggaaggaaa-ccagaaaaggacagcatcctggaagccatgagaaggaagttttccatggtagagagagtgattaatacgttaaagtctcctg---- i choHof1.scaffold_252582 N 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=47763.000000 s hg19.chrUn_gl000223 133106 69 + 180455 TTCAAGACTTTTCTGAGGTAAAA-CATGCGGTGCTGAGAATTTTTTTTATTTCTAAAAATCAAACAGAGA s tarSyr1.scaffold_33922 1912 47 - 17032 ------------CTGAGGTAAAACCATCTGGTGCTGAGAA-----TTTATCTCTAGGAATC------AGC i tarSyr1.scaffold_33922 N 0 C 0 s micMur1.scaffold_2411 170395 43 + 232311 TTCAGGACTTTT---------------------TTGA------TTTTTACCTCTAAAAATCAAACAGAGC i micMur1.scaffold_2411 N 0 C 0 s panTro2.chr12 257292 69 - 135371336 TTCAAGACTTTTCTGAGGTAAAA-CATGCGGTGCTGAGAATTTTTTTTATTTCTAAAAATCAAACAGAGA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 709 69 + 1554 TTCAAAACTTTTCTGAGGTAAAA-CATGTGGTGCTGAGAATTTTTTTTATTTCTAAAAATCAAACAGAGA i gorGor1.Supercontig_0087298 C 0 C 0 s ponAbe2.chr12 297764 69 - 136387465 ttcaagacttttctgaggtaaaa-catgtggtgctgagaattTTTTTTATTTCTAAAAATCAAACAGAGC i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=116546.000000 s hg19.chrUn_gl000223 133175 99 + 180455 CTCTAAGAGAGAAGACTCAGAGCCAAACAATCATGGATGTAAGTCAGCAAAGGCTGGAAGGTAGTGATAACTTCACAGAATTGAAAAGTTGGGATCCTG s ponAbe2.chr12 297833 99 - 136387465 CTCTAAGAGAGAAGACTCAGAGCCAAACAATCATGGATATAAGTCAGCAAAGGCTGGAAGGTAGTGATAACTTCACAGAATTGAAAAGTTGGGATCCTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 778 99 + 1554 CTCTAAGAGAGAAGACTCAGAGCCAGACAATCATGGATGTAAGTCAGCAAAGGCTGGAAGGTAGTGATAACTTCACAGAATTGAAAAGTTGGGATCCTG i gorGor1.Supercontig_0087298 C 0 C 0 s panTro2.chr12 257361 99 - 135371336 CTCTAAGAGAGAAGACTCAGAGCCAAACAATCATGGATGTAAGTCAGCAAAGGCTGGAAGGTAGTGATAACTTCACAGAATTGAAAAGTTGGGATCCTG i panTro2.chr12 C 0 C 0 s micMur1.scaffold_2411 170438 89 + 232311 CTCTAGAAGAGAAGACCCAAAGCAAAACAATCATGGACCTAAATCAGCAGGGGCTGGAAGGTAATGACAACTGTACAAAATCAAAAGGT---------- i micMur1.scaffold_2411 C 0 N 0 s tarSyr1.scaffold_33922 1959 99 - 17032 CTCTAGGAGAGAATATTCAAAACAAAACAATCATGGCCGTAAATCAGCAAGCGCTGGAAGGTGATGATAACCTCACAACCTGGAAAAGTTGGAAACATA i tarSyr1.scaffold_33922 C 0 I 2197 s dipOrd1.scaffold_43631 6675 96 - 14085 CCCTAGGATAGAAAACACAAAGAAACAGAGTCATGGAGGTTCACAAGCAAAGGC---AAGCTGCAAACAAGCTCACCGGATCAAGACTTTGGAAAGTTG i dipOrd1.scaffold_43631 N 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=158361.000000 s hg19.chrUn_gl000223 133274 260 + 180455 TTATACAGAAACAACCG--GCTATGCCTTGGGATCAAAATTCAGAACAATCAAATGGAAATTACAGTGAAGATGAATaaaagggaaagcagaaatggagaggaggaggagaagcaggcagaaagagagaaggagaaa-aacaagaggaaacattaaaggagctggaagatgaacaggaaaaagaaagcaaaaaagaaaatgaaaaacaaaaTATCCCAAGAAAAGACTAGTCAGCAAATCCCTCATGGAAACTCTTTGGGCAA s dipOrd1.scaffold_43631 6771 242 - 14085 TTTCACAGAAAAGAGCAACGCTATATCTGGCAATC-CAATCCACAGCCGTCGAACAGAATGGATCTGTCAGGCAAAGGAAATGGGAAGCAGAATTGGAGAA----------AGCGTGGAAGAGGAAAAAAGCAAAAAGAACATGAAAAGACACTAAA------AGAAGAT--ATGAGGGGGGGAAAAACGAAGGGAAAAGCAGGAAC--CTTGTCCCAAGAAAGTCCGAGTTAGCAAGTCCCTCTTAGAAACTCTCTGGACCA i dipOrd1.scaffold_43631 C 0 C 0 s ponAbe2.chr12 297932 255 - 136387465 TTATACAGAAACAACCG--GCTATGCCTTGGGATCAAAATTCAGAACAATCAAATGGAAATTACAGTGAAGATGAATaaaagggaaagcagaaatggagaggaggagg---agcaggcagaaagagacaaggagaaa-aacaagaggaaacgttaaaggagctggaagatgaacaagaaaaagaaaggaaaaaagaaaataaaaaAC--AATATCCCAAGAAAAAACTAGTCAGCAAATCCCTCATGGACACTCTTTGGGCAA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 877 258 + 1554 TTATACAGAAACAACCG--GCTATGCCTTGGGATCAAAATTCAGAACAATCAAATGGAAATTACAGTGAAGATGAATaaaagggaaagcagaaatggagagnaggaggagaagcaggcngaaagagagaaggagaaa-aacaagaggaaacattaaaggagctggaagatgaacaggaaaaagaaaggaaaaaagaaaatganaaAC--AATATCCCAAGAAAAGANTAGTCAGCAAATCCCTCATGGAAACTCTTTGGGCAA i gorGor1.Supercontig_0087298 C 0 C 0 s panTro2.chr12 257460 258 - 135371336 TTATACAGAAACAACCG--GCTATGCCTTGGGATCAAAATTCAGAACAATCAAATGGAAATTACAGTGAAGATGAATaaaagggaaagcagaaatggagaggaggaggagaagcaggcagaaagagagaaggagaaa-aacaagaggaaacattaaaggagctggaagatgaacaggaaaaagaaagcaaaaaagaaaatgaaaaAC--AATATCCCAAGAAAAGACTAGTCAGCAAATCCCTCATGGAAACTCTTTGGGCAA i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 2058 2197 - 17032 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=68775.000000 s hg19.chrUn_gl000223 133534 85 + 180455 AGTTTAAATTAAGCAGATGCCCCACAATACAAGAGAGTCTATTACTCTCATTT--GAATTTGGCATGACACATAAACAGATATGTCA s dipOrd1.scaffold_43631 7013 78 - 14085 AGTTTAAGCTGG---------CCAGCATGCGAGAGTACCTGTGGCTCTCCTTTCAAAAAAAAGCATGACAGATGTACAGATATGTCA i dipOrd1.scaffold_43631 C 0 C 0 s otoGar1.scaffold_49463.1-1478 757 85 + 1478 AGTTTAAATTAAACCAATACCTCACAATACTAGATAGTTTTTCCCTCTCATTT--GAATTTAGCATGACAAATAAACAGATATATCA i otoGar1.scaffold_49463.1-1478 N 0 C 0 s panTro2.chr12 257718 85 - 135371336 AGTTTAAATTAAACAGATGCCCCACAATACAAGAGAGTCTATTACTCTCATTT--GAATTTGGCATGACACATAAACAGATATGTCA i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 1135 81 + 1554 AGTTTAAATTAAACAGATGCCCCACAATACA--AGAGTCTATTACTCTCATTT--GAATTTGGCATGACAC--AAACAGATATGTCA i gorGor1.Supercontig_0087298 C 0 C 0 s ponAbe2.chr12 298187 80 - 136387465 AGTTTAAATGAAACAGATGCCCCACAATACAAGAGAGTCTATTACTCTCATTT--GAATTTGGCATGACACATAAACAGATA----- i ponAbe2.chr12 C 0 I 39 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 2058 2197 - 17032 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=78361.000000 s hg19.chrUn_gl000223 133619 84 + 180455 ATGGTTTTGT-------------------AAAAAGGGGACGAAATATAATACAGAAATGTCCAAGGGAAAGCATAAT-AAAAAACATAagagatgagggtcttg s dipOrd1.scaffold_43631 7091 83 - 14085 GTTGTTTTGT-------------------GAAAAGAGGAAGCAATACATTGAGGAAATGTCCAAGCACAGGCATAAG--AAGAGAAAAAGAGTCATGTGCCTTG i dipOrd1.scaffold_43631 C 0 N 0 s otoGar1.scaffold_49463.1-1478 842 92 + 1478 ATGGTTTTGTaaaaaaaaaaaaaaaaaaaaaaaaaaGGAATAAATACAAGAAAGCAATGTCCAAGCAGAAGTATAAC--AAAAGCCTAAGAGGT---------- i otoGar1.scaffold_49463.1-1478 C 0 N 0 s ponAbe2.chr12 298306 84 - 136387465 ATGGTTTTGT-------------------AAAAAGGGGAAGAAATGTAATAAAGAAATGTCCAAGGGAAAGCATAAT-AAAAAACATAAGGGATGggggtctcg i ponAbe2.chr12 I 39 C 0 s gorGor1.Supercontig_0087298 1216 84 + 1554 ATGGTTTTGT-------------------AAAAAGGGGACGAAATATAATAAAGAAATGTCCAAGGGAAAGCATAAT-AAAAAACATAagagatgggggtcttg i gorGor1.Supercontig_0087298 C 0 C 0 s panTro2.chr12 257803 84 - 135371336 ATGGTTTTGT-------------------AAAAAGGGGACGAAATATAATAAAGAAATGTCCAAGGGAAAGCATAAT-AAAAAACATAagagatgagggtcttg i panTro2.chr12 C 0 C 0 s calJac1.Contig1585 32062 67 + 407396 ----------------------------------GAGGAAGAAATATAATAAAGAACTGTCCAAGAGAAAGCATAAGAAAAAAACATATGCgatgggg---cct i calJac1.Contig1585 N 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 2058 2197 - 17032 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=92111.000000 s hg19.chrUn_gl000223 133703 116 + 180455 ctgagttgccaaggctgttcttgaactcctgccctcaagcgatcttcctaccttgctctccagaagtgttgtgattacaagcatgagccacccatacctggcTAAGATGTTTTATA s ponAbe2.chr12 298390 115 - 136387465 ctgagttgccaaggctggtcttgaactcctgccctcaagcgatcttcct-ccttgctctccagaagtgttgtgattacaagcatgagccacccatacctggctAAGACATTTCATA i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 1300 116 + 1554 ctgagttgccaaggctggtcttgaactcctgccctcaagcgatcttcctaccttgctctccagaagtgttgtgattacaagcatgagccacccatacctggctAAGATGTTTTATA i gorGor1.Supercontig_0087298 C 0 C 0 s panTro2.chr12 257887 116 - 135371336 ctgagttgccaaggctggtcttgaactcctgccctcaagcgatcttcctaccttgctctccagaagtgttgtgattacaagcatgagccacccatacctggctGAGATGTTTTATA i panTro2.chr12 C 0 C 0 s calJac1.Contig1585 32129 115 + 407396 ctgtgttgccaaggctggtcttgaactcctcccttcaagcaatcttcccaccttggcctccagaaatgctgtgattacaagcaagagcca-ttgcacctggctAACGCCTTTTATG i calJac1.Contig1585 C 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 2058 2197 - 17032 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=80570.000000 s hg19.chrUn_gl000223 133819 127 + 180455 TGACACCATTCTCACAAATAAATGGAGTTCGGAAAGGATAAACAAGAAAATATTAACAATCGTTAATTTTGTGGAG--------------------------TAGAACTAAATGAGGGCAGTGCAAAGTGGTTCCTGGACATTCTATTTTTAC s ponAbe2.chr12 298505 127 - 136387465 TGACACCATTCTCACAAATAAATGGAGTTCTGAAAGGACAAACAAGAAAATATTAACAATCATTAATTTTGTGGAG--------------------------TAGAACTAAATGAGGGCAGTGCAAAGTGGTTCCTGGGCATTCTATTTTTAC i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0087298 1416 127 + 1554 TGACACCATTCTCACAAATAAATGGAGTTCGGAAAGGATAAACAAGAAAATGTTAACAATCGTTAATTTTGTGGAG--------------------------TAGAACTAAATGAGGGCAGTGCAAAGTGGTTCCTGGACATTCTATTTTTAC i gorGor1.Supercontig_0087298 C 0 N 0 s panTro2.chr12 258003 127 - 135371336 TGACACCATTCTCACAAATAAATGGAGTTCGGAAAGGATAAACAAGAAAATATTAACAATCGTTAATTTTGTGGAG--------------------------TAGAACTAAATGAGGGCAGTGCAAAGCGGTTCCTGGACATTCTATTTTTAC i panTro2.chr12 C 0 C 0 s speTri1.scaffold_85352 534 127 + 4290 TGACACCATTCTCATGTATAAATG-----------------------AAAAAGTAAC--TCATTAATTTTGTATAGTAGAACAAACAAGAAATAAGGTATGATAGAACTAGGTGAGGAGA-TTCAAAGGAATTTCTAAACATGGTATTTTTAC i speTri1.scaffold_85352 N 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 2058 2197 - 17032 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=28797.000000 s hg19.chrUn_gl000223 133946 71 + 180455 CCTACTGTGGATTTAACATTTTTATAATGGACAATAATTGATTTTATTTAAGAAAAAAATCAATAAGGAAA s ponAbe2.chr12 298632 70 - 136387465 CCTACTGTAGATTTAACATTTTTATAATTGACAATAATTGATCTCATTTACG-AAAAAATCAATAAGGAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 258130 71 - 135371336 CCTACTGTGGATTTAACATTTTTATAATGGACAATAATTGATTTTATTTAAGAAAAAAATAAATAAGGAAA i panTro2.chr12 C 0 C 0 s speTri1.scaffold_85352 661 71 + 4290 CCTATTGTGGATCTGAAGTTTTTATTATGTGTGTTCATTGATTTTATTTAAGAAAAAAATCAATAAAGAAA i speTri1.scaffold_85352 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 2058 2197 - 17032 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=15696.000000 s hg19.chrUn_gl000223 134017 37 + 180455 GTATCAACCTCTGGGGGGAAAAAAGATTATGGTTTAA s speTri1.scaffold_85352 732 36 + 4290 TTACCAACTTCTGTGGAAATAGATTTAATGGGTTTA- i speTri1.scaffold_85352 C 0 C 0 s tarSyr1.scaffold_33922 4255 37 - 17032 TTACCAAGCTCTGGGGGAAAAAAAAAagaacatttaa i tarSyr1.scaffold_33922 I 2197 T 1016 s ponAbe2.chr12 298702 37 - 136387465 GTATCAACCTCTGGGGGAAAAAAAGATTATGGTTTAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 258201 37 - 135371336 GTATCAACCTTTGGGGGGAGAAAAGATTATGGTTTAA i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=34733.000000 s hg19.chrUn_gl000223 134054 169 + 180455 ATCTTTGACAGACAACTAGACTGGAAATTACTACCAAAAAAAAaaaaaacgtgtttcagtggaaagctatgtgttggtcacata---ctgtacaaccttcctcaaagttatctgattccagacatatt--------tcattatcttttagctattttTTAAAAAACTCGTTGggccgggc s panTro2.chr12 258238 168 - 135371336 ATCTTTGACAGACAACTAGACTGGAAATTACTACC-AAAAAAAaaaaaatgtgtttcagtggaaaactatgtgttggtcacata---ctgtacatccttcctcaaagttatctgattccagacatatt--------tcattaacttttagctattttTTTAAAAACTCGTTGggccgggc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 298739 167 - 136387465 ATCTTTGACAGACAACTAGACTGGAAATTACTACT-AAAAAAAaaaaaaagtgtttcagtggaaaactatgtgttggtcacata---ctatacatccttcctcaaagttatctgattccagacatgtt--------tcattatcttttagctatttttt-aaaaactctTTGggccgggc i ponAbe2.chr12 C 0 C 0 s speTri1.scaffold_85352 768 106 + 4290 ------------------------------------------------ATGCATTTC----GAAAACT--------GTCATGCACCTCTGAACAACCCT-TTCTACCTTCTCTG----CAAACTTGATAGGGCTCCTGATTTTGTTTGGGGTGTGTCATAAA-------TTAGA--GGAC i speTri1.scaffold_85352 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e tarSyr1.scaffold_33922 4292 1016 - 17032 T e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=123696.000000 s hg19.chrUn_gl000223 134223 303 + 180455 gcggtgcctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcac--gaggtcaaga-------gatcgagactatcctggctaacatggtgaaaccccgtgtctactaaaaatacaaaaaat-------------------tagccaggcgtggtagcgggcgcctgtagtcccagctactcgggaggctgaggcaggaggatggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcattccagcctgggcgacagagcaagactctgtctc-aaaaataataataattttaaaaaagtaaaa s tarSyr1.scaffold_33922 3276 300 - 17032 acagtggctcacatctgtagttccagcactttgggaggcagaggcaagaggattgcctgagcccaggg-------gttctagactggcctgagcaatttggggagaccctgtctctacaataaat-taaaaaat-------------------tagccaggtgtggtggcacatgcctatagctccagctacttggaaggctaaggt-ggaggattgcctaagtccagtaggatgaggctgtggtga-ccatgaacatgctactgcattccagcctaggcgac--agtgagactctgactc-aaaaataaaaataaaaataaataaataaaa i tarSyr1.scaffold_33922 T 1016 N 0 s ponAbe2.chr12 298906 304 - 136387465 gcggtgtctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcac--gaggacaaga-------gatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaat-------------------tagccgggcatggtagcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccgagatcacgccactgtactccagcctgggcgacacagcgagactccgtctcaaaaaataataataataataataaaataaAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 258406 303 - 135371336 gcggtgcctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcac--gaggtcaaga-------gatcgagactatcctggctaacacggtgaaaccccgtgtctactaaaaatacaaaaaat-------------------tagccgggcgtggtagcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacccgagaggcggagcttgcagtgagccaagatcatgccactgcattccagcctgggcgacagagcaagactccatctc-aaaaataataataattttaaaaaagtaaaa i panTro2.chr12 C 0 C 0 s speTri1.scaffold_85352 874 296 + 4290 CAAATTTCTTCAGTTTTTTACAGGAGCAAGTTAGAGGGTGAAATAAGGAAGGCAGG--GAAGACAAGAAGATATCAATGGATATGATAATGACTGATAAAAT-AAATTAGGGGTCAAATAAGAGTATGGAAAATAATTGAAAAGGAAATTTTAGagccaggctcaatggcgcacacctataagttcagcaactcaggaggctaagacaggaggatctca----------------aacttgaggtcagctaca-----gcaaccctatgaaacccttagcaagttagcaataccctgtctc-aa----aataaaaAAATTAAAAA------- i speTri1.scaffold_85352 C 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=876851.000000 s hg19.chrUn_gl000223 134526 3309 + 180455 aCTCTTTGTGGGTTGTAGGGtatcttagtccatttgtgcttctataacaaaatacctgaggctgggtaattcataaagaacagaaacttatttatcatagttctgagggctagaagatctagatcaaggcaccagcaggtttggtgtctgctaagagcccagtgtctgcctccaagacggcatcttgtaaccacaccctccagaggggaggaaagctgtgtcctcacagggccaaagggatggaaggggcaaaaagggccaaactccctccattaagccttttattttatttta-----ttttattttattttattttattttttgagacagagtcttactctgtcccccaggctggagtgcagtggcgcgatcttggctcactgcaacctccgcctccccggttcaagcaattctctgcctcagccccccaagtagctgggattgcaggcgcccaccaccacgcccagctaattcttgtatttttagtagagatggggtttcaccatcttggctaggctggtcttgaactcctaacctcgtgatccacccgccttggcctcccaaagtgctgggattacagtcgtgaaccaccgcgcccggccccattaaccctttaataatggcattaatccatttatgagggcagaacactcatgacctaacacctctgccaaggccccacctcccaacagtgttgcattggggattaaatttccaagtttgggggacatattcagaccatagtaTAGGAAAAGACAGGCATGCAGAACTCTTGTTTGGTAGAGTTTGTCTCCCTCCTGGGGAAAATGTA-tttttttcttaatttgaaattcttttttttttcacagtctcactctgtcaccctaggctggagtgcagtggctgcaatctctgctcactgcaacctctgcctctcaggttcaagcaattcttgtgcctcaacctcccaagtagctggaattataggaacctgccaccacgcctggctagtttttgtattgttagtagagacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccgtctcagcctcccaaagtgctgggataagagacgtgagccaccgcccccagccTATGTAGccatttgatgtaaactgtt----tgagcttatacctggcttggaaccactgttgtctgtaagtgatataactgcactgctgactctgtaggggagagaataaagccatgtcccaaccaccttcggtcccttcagtgttctttctgctgcccaccacccatccaccaactccactcagactccagctcaggttggaacctaacagaatcccaaagctgaagaacttggagtccagtgttcgagggcagga---atcatccagcgtgggagaaagacataggctgagaggctaagccagtctagtcttttcatgttcttctgcctgc--------ttttttttttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcacgatttcagctcactgcaacctctgcctcctgggttcaagcaattctctgcctcagcctcccgagtagctgggattacaggtgcctgccaccacgcccagctaatttttgtgtatttttagtacagacgggattatatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtaagccactgcacctggccctctgcctgctttttattctggctgcactggtaggtgattagatggtgccctcccagattaagggtgcgtctgcttttccaagtccactgactcaaatgttaatgtcctttggcaacaccctcacagacacacccaggatcaatacttagcatccttcaatccaatcaagttgacactcagtgttgaccatcacaTAGTGGAAGAGCAGCCCCCATTTTCTTTATGTTAGTCACTTTATCAACATCATTCC---------ttttttttttttgagatgaagtctcgcttttgtcccccaggttggagtgcaatggcgtgatctcggctcactgcagcctccgcctcctggattcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgtccgccaccatgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctctatctcctgacctcaggtggtcagcccgccttggcctccctaagtgctgggattacaggcgtgagccactacgcccagccCATCATTCCTTATTCTTAAAACAACTCTATGAGGATCTTTTTATTATGCTCTGATATAGTTTGAATATATGAAACTAgatatagtttgaatgtatgttcccacccaaatctcatgttgaaatgtaatccccagtgttggaggtggagcctggtgagaggtgtttgggtcatgagga-------tagatctctcgtggttcggtgtaatccaataatgagtgagttctcacaagacatggttgtttctttttttcttttttttttttttttgagacagtctcactctgtcgcccaggctggagtgcagtggcgcaatcttggctcacggcaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggtgtccaccactgtgcccggctaa-ttttttgtatttttagtagagacagggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggtgtgagccacctcgcctggccaagatctggttgtttaaaagtgtggtgcctcctccatttttctgccatttctgccgcatgagatgcctgctccactccatgttccacaatgactggaagcttccaaagccttccccagaagcaaatgccaggactgtttcctgtacagcctgcagagctgtaagccaaataaacctattttcttataattacccagtctcaggtatttctttatagcaatgcaagaatggactgacacCTGCTCATTGtgaagaaacaagcatagaaaatttgctatttgcccaaggacataggtagcaattgaaggacttatggtataaagtctgggtcattagggatccaaatcctgagttcttttctttattccatttaccccCAGTtgtctcaggatccttggggtgttgcttttccagccagaaacctctgtggcctgtggcgcctttgcccgagttttgctcaggccctctagactcattc s panTro2.chr12 258709 3299 - 135371336 aCTCTTTGTGGGTTGTAGGGtatcttagtccatttgtgcttctataacaaaatacctgaggctgggtaattcataaagaacagaaacttatttatcatagttctgagggctagaagatctagatcaaggcaccagcaggtttggtgtctgctaagagcccagtgtctgcctccaagacggcatcttgtaaccacaccctccagaggggaggaaagctgtgtcctcacagggccaaagggacggaaggggcaaaaagggccaaactccctccattaagccttttattttattttattttgttttgttttattttattttattttttgagacagagtctcactctgtcccccaggctggagtgcagtggcgcgatcttggctcactgcaacctccgcctcccacgttcaagcaattctctgcctcagccccccaagtagctgggattgcaggcgcccaccaccacgcccagctaattcttgtatttttagtagagaaggggtttcaccatcttggctaggctggtcttgaactcctaacctcgtgatccacctgccttggcctcccaaagtgctgggattacagtcgtgaaccaccgcgcccggccccattaaccctttaataatggcattaatccatttatgagggcagaactctcatgacctaacacctccgccaaggccccacctcccaacactgttgcattggggattaaatttccaagtttgggggacatattcagaccatagtaTAGGAAAAGACAGGCATGCAGAACTCTTGTTTGGTAGAGTTTGTCTCCCTCCTGGGGAAAATGTA-tttttttcttaatttgaaattttttttttttccgca----------gtcaccctaggctggagtgcagtggctgcaatctctgctcactgcaacctctgcctctcaggttcaagcaattcttgtgcctcaacctcccaagtagctggaattacaggcacctgccaccacgcctggctagtttttgtattgttagtagagacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccgtctcagcctcccaaagtgctaggataacaggcatgagccaccgcccccagccTATGTAGccatttgatgtaaactgtt----ggagcttatacctggctttgaaccactgttgtctgtaagtgatataactgcactgctgactctgtaggggagagaataaagccatgtcccaaccaccttcggtcccttcagtgttctttctgctgcccaccacccatccaccaactccactcagaccccagctcaggttggaacctaacagaatcccaaagctgaagaacttggagtccagtgttcgagggcagga---atcatccagcacaggagaaagacataggctgggaggctaagccagtctagtcttttcatgttcttctgcctgc--------------ttttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcacgatttcagctcactgcaacctccgcctcctgggttcaagcaattctctgcctcagcctcccgagtagctgggattacaggtgcccgccaccatgcccagctaatttttgtgtattttttgtacagacgggattatatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccgcctcggcctccccaagtgctgggattacagacgtaagccactgcacntggccctctgcctgctttttattctggctgcactggtaggtgattagatggtgccctcccagattaagggtgcatctgcttttccaagtccactgactcaaatgttaatgtcctttggcaacaccctcacagacacacccaggatcaatacttagcatccttcaatccaatcaagttgacactcagtgttgaccatcacaTAGTGGAAGAGCAGCCCCCATTTTCTTTATGTTAGTCACTTTATCAACATCAttcc-------ttttttttttttttgagatgaagtctcgcttttgtcccccaggttggagtgcaatggcgcgatctcggctcactgcagcctccgcctcctggattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgtccgccaccatgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctctatctcctgacctcaggtggtcagcccgccttggcctccctaagtgctgggattacaggcgtgagccaccatgcccagccCATCATTCCTTATTCTTAAAACAACTCTATGAGGATCTTTTTATTATGCTCTGATATAGTTTGAATATATGAAACTAgatatagtttgaatgtatgttcccacccaaatttcatgttgaaatgtaatccccagtgttggaggtggagcctggtgagaggtgtttgggtcatgagga-------tagatctctcgtggttcggtgtaatccaataatgagtgagttctcacaagacatggttgtttctttctttc-tttttttttttttttgagacagtctcactctgtcgcccaggctggagtgcagtggcgcaatcttggctcacggcaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactgcaggtgtccaccactgtgcccggctaa-ttttttgtatttttagtagagacaaggtttcattgtgttagccaggatggtcttgatctcctgacctcgtgatccacccacctcagcctcccaaagtgctgggattacaggtgtgagccacctcgcctggccaagatctggttgtttaaaagtgtggtgcctcccccatttttctgccatttctgccacatgagatgcctgctccactccatgttccacaatgactggaagtttccaaagccttccgcagaagcaattgccaggactgtttcctgtacagcctgcagagctgtaagccaaataaacctattttcttctaattacccagtctcaggtatttctttatagcaatgcaagaatggactgacacaTGCTCATTGTGAAGAAACAAGCATAGAAAATTTGCTATTTGCCCAAGGACATAGGTAGCAATTGAAGGACTTATGGTATAAAGTCTGGGTCATTAGGGATCCAAATCCTGAGTTCTTTTCTTTATTCCATTTACCCCCAGTtgtctcaggatccttggggtgttgcttttccagccagaaacctctgtggcctgtggcgcctttgcccgagttttgctcaggccctctagactcattc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 299210 3318 - 136387465 ACTCTTTGTGGGTTGTAGGGtatcttagtccatttgtgcttctataacaaaatacctgaggctgggtaattcataaagaacagaaacttatttatcatagttctgagggctagaagatctagatcaaggcaccagcaggtttggtgtctgctaagagcacagtgtctgcctccaacacggcatcttgtaaccacaccctccagaggggaggaaagctgtgtcctcacaggcccaaagggatggaaagggcaaaaagggccaaactccctccattaagccttttattttatttta---------------ttttattttattttttgagacagagtctcactctgtcctccaggctggagtgcagtggcgcgatcttggctcactgcaacctccgcctcccaggttcaagcaattctctgcctcagcctcccaagtagctgggattgcaggcgcccaccaccacgcccaggtaatttttgtatttttagtagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcatgatccacccgccttggcctcccaaagtgttgggattacaggtgtgaaccaccgcgcccggccccattaaccctttaataatggcattaatccatttatgagggcagaacactcatgacctaacacctcccccaaggccccacctcccaacactgttgcattggggattaaatttccaagttttggggacatattcagaccatagtaTAGGAAAAGACAGGCATGCAGAACTCTTGTTTGGTAGAGTTTGTCTCCCTCCTGGGGAAAATGTAttttttttcttaatttgaaattcttttttttttcacagtctcactctgtcaccccaggctggagtgcagtggctgctatctctgctcactgcaacctctgcctctcaggttcaagcaattcttgtgcctcaacctcccaagtagctggaattacaggcatctgccaccatgcctggctagtttttgtattgttagtagagacagggtttcgccatgttggccaggctggttttgaactcctgacctcaagtgatctgtccgtctcagcctcccaaagtgctgggataacaggcatgagccaccacacccagccTATGTAGccatttgatgtaacctgtttgtgtgagcttctacctggctttgaaccactgttgtctgtgagtgatataactgcattgctgactctgtaggagagagaataaagccatgtcccaaccaccttcagtcccttcagtgttctttccgctgcccaccacccatccaccaactccactcagaccccagcacaggttggaacctgacagaatcccaaagctgaagaacttggagtccagtgttcgagggcaggaatcatcatccagcacgggagaaagatgtaggctgggaggctaagccagtctagtcttttcgtgttcttctgcctgcttttttttttttttttttttttttttgagatggagtctcactctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcctgggttcaagcaattctctgcctcagcctcctgagtagctgagattacaggtgcccgccaccacgcccagctaatttttgtgtatttttagtagagacgggattacaccatcttggccaggctggttttgaactcctgacctcgtgatccacccaccttggcctgccaaagtgctgggattacaggcgtaagccactgtacctggccctttgcctgctttttattctggctgcgctggtaggtgattagatggtgccctcccagattaagggtgcatctgcttttcccagtccactgactcaaatgttaatgtcctttggcaacaccctcacagacacatccaggatcaatacttagcatccttcaatccaatcaagttgacacacagtgttaaccatcacaTAGTGGAAGAGCAGCCCCCATTTTCTTTATGTTAGTCACTTTATCAACATCATTCCTTAttctttttttttttttttgagatgaagtcttgcttttgtcccccaggctggagtgcaatggcacaatctcggctcactgcagcctccgcctcctggattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccaccatgcccagctaatttttgtatttttagt--agacagggtttcaccgtgttggccaggctggtctctatctcctgacctcaggtggtccgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacgcccagccCATCATTCCTTATTCTGAAAACAACTCTATGAGGATCCTTTTATTATGCTCTGATATAGTTTGAATAAATGAAACTAgatatagtttgaatgtatgttcccacccaaatctcatgttgaaatgtaatccccagtgttggaggtggggcctggtgagaggtgtttgggtcatgaggacagatctcagatctctcgtagttcggtgtaatccaataatgagtgagttctcacaagatatggttgt------------ttcttttttttttttgagacagtctcaccctgtcacccaggctggagtgtagtggcacaatcttggctcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggtgtccaccactgtgcccggctaatttttttgtatttttagtagagacaggctttcactgtgttagccaggatggtcttgatctcctgaccttgtgatccacccacctcagcctcccaaagtgctgggattacaggtatgagccactgcacctggccatgatctggttgtttaaaagtgtggtgcctcccccatttttctgccatttctgccgcatgaaatgcctgctccactccatgttccacaatgattggaagcttccaaaggcttccccagaagcagatgccaggactgtttcctgtatagcctgcagagctgtaagccaaataaacctattttcttataattaccccatcttgggtatttctttatagcaatgcaagaatggactgacacaTGCTCATTGTGAAGAACCAAGCATAGAAAATTTGCTATTTGCCCAAGGACATAGGTAGCAATTGAAGGACGTATGGTATAAAGTCTGGATCATTAAGGATCCCAATCCTGAGTTCTTTTCTTTATTCCATTTACCCCCAATtgtctcaggatccttgcagtgttgcttttccagccagaaacctctgtggcctgtggcgcctttgcctgagttttgctcaggccctctagactcattc i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=13730.000000 s hg19.chrUn_gl000223 137835 50 + 180455 tgtccactcagcct---ggcatgttgtgcttggctcatgccacctgtctggac s echTel1.scaffold_167108 885 53 + 3928 TGTCCACGCCACTTGCAGGAATTCCGTGACTTGTCCACACCACTTGTAGGAAT i echTel1.scaffold_167108 N 0 C 0 s panTro2.chr12 262008 50 - 135371336 tgtccactcagcct---ggcatgttgtgcttggctcgcgccacctgcctggac i panTro2.chr12 C 0 I 739 s ponAbe2.chr12 302528 44 - 136387465 tgtccactcagcct---ggcatgttgtgcttggctcaagccacctgt------ i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=900.000000 s hg19.chrUn_gl000223 137885 31 + 180455 cctgcg-cttgGCTCGCGCCACCTGCCTGGAT s panTro2.chr12 262797 31 - 135371336 CCTGCG-CTTGGCTCGCGCCACCTGCCTGGAT i panTro2.chr12 I 739 C 0 s ponAbe2.chr12 302572 6 - 136387465 --------------------------ctggat i ponAbe2.chr12 C 0 C 0 s echTel1.scaffold_167108 938 31 + 3928 TCCATG-ACTTGTCCACACCACTTGTAGGAAT i echTel1.scaffold_167108 C 0 C 0 s xenTro2.scaffold_884 196513 30 + 319004 CCAGTGTATCAACCCCCGC--CCTGTCCCGAT i xenTro2.scaffold_884 N 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=19629.000000 s hg19.chrUn_gl000223 137916 31 + 180455 CCTGCGCTTGGCTCGCGCCACCTGCCTGGAT s otoGar1.scaffold_82261.1-48163 32407 31 - 48163 CCCATGCTTGGTGCTTGCCTCCTGCGTGGGT i otoGar1.scaffold_82261.1-48163 N 0 C 0 s ponAbe2.chr12 302578 31 - 136387465 cctgcacttggctcacgccacctgcctggat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 262828 31 - 135371336 CCTGCGCTTGGCTCGCGCCACCTGCCTGGAT i panTro2.chr12 C 0 C 0 s myoLuc1.scaffold_146546 18770 23 + 55085 --------CGGGTCACCCCACCTGCCCCCAG i myoLuc1.scaffold_146546 N 0 N 0 s echTel1.scaffold_167108 969 31 + 3928 TCCGTGACTTGTCCACGCCACTTGTAGGAAT i echTel1.scaffold_167108 C 0 C 0 s xenTro2.scaffold_884 196543 31 + 319004 TCAGTGTTTTGCCCCCCCGCCCTGTCCCGAT i xenTro2.scaffold_884 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=27465.000000 s hg19.chrUn_gl000223 137947 72 + 180455 CCTGCGCTTGGCTCGCGCCACCTGCCTGGATCCTGCGCTTGGCTCGCGCCACCTGCCTGGATCCTGCGC--------------------------------------------------------------TTG s otoGar1.scaffold_82261.1-48163 32438 72 - 48163 CCTCTGCTTGGTGCTTGCCTCCTGCGTGGGTCCTCTGCTTGGTGCTTGCCTCCTGCGTGGATCCtctgt--------------------------------------------------------------tcc i otoGar1.scaffold_82261.1-48163 C 0 C 0 s ponAbe2.chr12 302609 69 - 136387465 cccgtgcttggctcacgccacctgcctggatcccgtgcttggctcacgccacctgcctggatcccgtgc----------------------------------------------------------------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 262859 134 - 135371336 CCTGCGTTTGGCTCGCGCCACCTGCCTGGATCCTGCGCTTGGCTCGCGCCACCTGCCTGGATCCTGCGCTTGGCTCGCGTCACCTGTCTGGATCCTGCGCTTCGCTCGCGCCACCTGTCTGGATCCTGCGTTTG i panTro2.chr12 C 0 C 0 s echTel1.scaffold_167108 1000 72 + 3928 TCCGTGACTTGTCCACGCCACTTGCAGGAATTCCATGACTTGTCCACGCCACTTGCAGGAATTCTGTGA--------------------------------------------------------------CTT i echTel1.scaffold_167108 C 0 C 0 s xenTro2.scaffold_884 196574 71 + 319004 CCAGAGTTTTGCCCCCCCACCCTGTCCCGATTCAGTGTTTTGCCCcc-cgtcctgtcccgatccagtgt--------------------------------------------------------------ttt i xenTro2.scaffold_884 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=8186.000000 s hg19.chrUn_gl000223 138019 32 + 180455 GCTCGCGCCACCTGTCTGGATCCTGcgcttgg s otoGar1.scaffold_82261.1-48163 32510 32 - 48163 attcttcctacttttctgcattctttgcatgg i otoGar1.scaffold_82261.1-48163 C 0 N 0 s panTro2.chr12 262993 32 - 135371336 GCTCGCGCCACCTGTCTGGATCCTGcgcttgg i panTro2.chr12 C 0 C 0 s echTel1.scaffold_167108 1072 32 + 3928 GTCCACGCCACTTGTAGGAATTCCGTGACTTG i echTel1.scaffold_167108 C 0 C 0 s xenTro2.scaffold_884 196645 31 + 319004 -gccccccgccctgtcccgatccagtgttttt i xenTro2.scaffold_884 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 302678 0 - 136387465 C e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=11247.000000 s hg19.chrUn_gl000223 138051 60 + 180455 ctcgcgccacctgtctggatcctgtgcttggcttgcgctacctgtctagatcctatgcct s panTro2.chr12 263025 60 - 135371336 ctcgcgccacctgtctggatcctgtgcttggcttgcgctacctgtctagatcctatgcct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 302678 33 - 136387465 ---------------------------ttggctcgcgctacctgtctggatcctacgcct i ponAbe2.chr12 C 0 C 0 s echTel1.scaffold_167108 1104 46 + 3928 TCCACGCCACTTGCAGGAATTCCGTGGCTTGTCCACGCCATGTGTC-------------- i echTel1.scaffold_167108 C 0 N 0 s xenTro2.scaffold_884 196676 59 + 319004 cccccccgccctgtcccgatccagtgtttcgacccc-cgtcctgtcccgatccagtgttt i xenTro2.scaffold_884 C 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=202656.000000 s hg19.chrUn_gl000223 138111 744 + 180455 gcaaaggctgagtcaggcgtggcgcgatgaggagtgtgtgagcgagcatggggtctggccgctacacagtagacatgccggctgctgcagtggggtgggcagctccaggtgctggaataggcaccagctctcggcaaagctgtggctggaccaggtacaccacaagcagcttcaacagctggcactgggaaacgcagtggcattcagaagcttggtgatgccaaggaccacagggcccctaagagggagtcacagccctggctcagggagcttccaggtctgggatccccgaagggccgcagctcttctctcctctgcactcgcaacatggtgagcaaggggcatgtttcagccctgtttgtgttacagctcttttagccccaccattcaacagatcctgagttcttgtcctgcgaccaggaagaaagaggtacacggacaagtgaagggtgagcgaggtgaagaggagctttattgagcaatagaacagctcagaggagacccacagtgggtagctcctttctgcagccagggtgtcctgacaagcattcagctcctagcagagagaacaccctggagtcggaggtgttctcactctctacaagcaggtcatcccattatctctgcagctttcagcagagaggaggccctggactgggtagctcttctccacagctggttatcctgacacctgctcagctctggctgagcctggggctttcatgggcctcagagaggagaaag s panTro2.chr12 263085 744 - 135371336 gcaaaggctgagtcaggcatggcgcgatgaggagtgtgtgagcgagcatgggttctggccgctacacagtagacatgccggctgctgcagtggggtgggcagctccaggtgctggaataggcaccagctctcggcaaagctgtggctggaccaggtacaccacaagcagcttcaacagctggcactgggaaacgcagtggcattcagaagcttggtgatgccaaggaccacagggcccctaagagggagtcacagccctggctcagggagcttccaggtctgggatccccgaagggccgcagctcttctctcctctgcactcgcaacatggtgagcaaggggcatgtttcagccctgtttgtgttacagctcttttagccccaccattcaacagatcctgagttcttgtccagtgatcaggaagaatgaggtacatggacaagtgaagggtgagcgaggtgaagaggagctttattgagcaatagaacagctcagaggagacccacaatgggtagctcctttctgcagccagggtgtcctgacaagcgttcagctcctagcagagagaacaccctggagtgggaggtgttctcactctctacaagcaggtcatcccattatctctgcagttttcagcagagaggaggccctggactgggtagctcttctctgcagctggttatcctgacacctgctcagctctggctgagcctggggctttcatgggcctcagagaggaggaag i panTro2.chr12 C 0 M 587 s ponAbe2.chr12 302711 739 - 136387465 gcaaaggctgagtcaggcatggcgtgatgaggagtgtgtgagcgagcatggggtctggccgctacacagtagacatgccggctgctgcagtgaggtgggcagctccaggtgctggaataggcaccagctctcggcaaagctgtggctggaccaggcacaccacaagcagcttcaacagctggcactgggaaacgcagtggcattcagaagcttggtgatgccaaggaccacagggcccctaagagggagtcatggccctggctcagggagctcccaggtctgggatccccgaagggccacagctcttctctcctctgcactcgcaacatggtgagcaaggggcatgtttcagccctgtttgtattacagctcttttagtcccaccattcaacagatcctgagttcttgtcctgcgaccaggaagaacaaggtacatggacaactgaagggtgagcaaggtgaagaggagctttattgagcaatagaacagctcagaggagacccacagtgggtagttcctttctgcagccagggtgtcctgacaagtgttcagctcctagcagagagaacaccctggagtaggaag----ctc-ctctctacaagcaggtcatcccattatctctgcagctctcagcagagaggaggccttggactgggtagctcttctctgcagctggttatcctgacacctgctcagctctggctgagcctggggctttcatgggcctcagagaggaggaag i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=35852.000000 s hg19.chrUn_gl000223 138855 400 + 180455 agccttccaatgggtccatgggtggctgtgggtgggcctggaaaaggcaccacaagttcccgctctggtctgcgggactgggagcccggcccccagccttctagcccttcctggcctcaaggtgggg-ctcaccagggacacgcccccttccacccaggaacctgtctgcctcctgctgtc-ttcatggtgcccaggctgggcagtgccaagctgccctcagccccccatcatcttccctcctatgctcatcagtgcccaatgtccagagggggctgaggcagcaagggactggcgggtcagcactgccttgagagcgtgcacacccagccaggctgtgacagtgcccaggcttggccccagctttgctccgagattggagcaggcaccgacagcagagaaa s ponAbe2.chr12 303450 402 - 136387465 agacttccagtgggtccatgagtggctgtgggtgggcctggaaaaggcaccacaagttcccgctctggtctgcaggactgggagcccgacccccagccttccagcccttcctggcctcaaggtggggcctcaccagggacacgcccccttccacccaggaacctgtctgcctcctgctgtcgttcatggtgcccaggctgggcagcgccaagctgccctcagccccccatcagcttccctcctatgctcatcagtgcccaatgtccagagggggctgaggcagcaagggactggcgtgtcagcactgccttgagagcatgcacacccagccacgctgtgacagtgcccaggcttggccccagctttgctccgagattggagcaggtgccgacagcagagaaa i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 263829 587 - 135371336 M e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=110622.000000 s hg19.chrUn_gl000223 139255 418 + 180455 agccaggcagggggagcaggcatttcccagcctgcgaggtcaggggggtcttcctgggccctccagagtgcagagatgcctgggtctgcagtcatggtttgcagctgcgtgggaaggaggggcggggtgggattcctgcctgtttcatggagccagaggctcagatctgcagccacagtttggacagctgcagctgtgtccaggagggtggggctccagcctgctccccaccctgagagcacggggatacctgggtggtttgggcagctgcagtggcacctggggaactcccaccccaacttggaagggacgacgtgctcacttgtccccagctccatggagcatgtagccccaggcgtgctccgctgctgcagcctgcatgatggcagcaggcactccagacagcccgccgctgcca s panTro2.chr12 264420 416 - 135371336 agcctggcagggggagcagg-attttccagccccagaggtcagggggctcttcctgggccctccagagtgcagagatgcctgggtctgcagtcatggtttgcagctgcgtgggaaggaggggcggggtgggattcctgcctgtttcatggagccagaggctcagatctg-agccacagtttggacagctgcagctgtgtccaggagggtggggctccagcctgctccccaccctgagagcacagggatgcctgggtggtttgggcagctgcagtggcacctggggaactcccgccccaacttggaagggacgacgcgctcacttgtccccagctccatggagcatgcagccccaggcgtgctccgctgctgcagccggcatgatggcagcaggcactccagacagcccgccgctgcca i panTro2.chr12 M 587 C 0 s ponAbe2.chr12 303852 418 - 136387465 agccgggcagtgggagcaggcatttaccagcctgcgaggtcaggggggtcttcctgggccctccagagtgcagagatgcctgggtctgcagtcatggtttgcagctgcacgggaaggaggggcggggcgggattcctgcctgtttcatggagccagaggctcagatctgcagccacagtttggacagctgcagctgtgcccaggagggtggggctccagcctgctccccaccctgagagcacacggatgcctgggtggtttgggcagctgcagtggcacctgggaaactcccgccccaacttggaagggacgaggctctcacttgtccccagctccatggagcatgcagccccaggcgtgcaccgctgctgcagctggcatgatggcagcagccactccaggcagcccgccgctgcca i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30015467 1689 - 76506943 I e equCab2.chr8 64181196 1026 - 94057673 I e canFam2.chr26 3229699 1296 + 42029645 I a score=302430.000000 s hg19.chrUn_gl000223 139673 310 + 180455 caattTAATCTTCCCTTTCTATCTAAACCCAGAGCTAATAA----GGCACTGCTATAGCCTCATAACATTCCTAA-CAAATTGTATTTTTAGCAAATTCCAGACACATATTCTATGCCCAGTTCTCTAACTGAAGCAAACTT-AGTCACCACTTATGACCGTTCTT---------------------A-GGCCG--------TCCTTCCACCTGGATTGTGAGATTATATCGTTGACGTAAGTTTAAATGCATAGTCCCTAATCATGCAGGCTTCCCAGAGCTATCCATATTAGACAAGAACCCTGGTCTCCTGCTACC----------CCAGGTCTTCTTATTCATAATTATA------TG s ponAbe2.chr12 304270 311 - 136387465 CAATTTAATCTTCCCTTTCTATCTAAACCCAGAGCTAATAA----GGCACTGCTATAGCCTCGTAACATTCTTAA-CAAATTGTATTTTTAGCAAATTCCAAACACACATTCTATGCCCAGTTCTCTAACTGAAGCAAACTT-AGTCACCACTTATGACCTTTCGT---------------------AGGGCCG--------TCCTTCCACCTGGATTGTGATATTATAGCATTGATGTAAGTTTAAATGCATAGTCCCTAATCATGCAGGCTTCCCAGATCTATCCATATTGGACAGGAACCCTGGTCTCCTGCTACC----------CCAGGTCTTCTTATTCATAATTATA------TG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 264836 310 - 135371336 CAATTTAATCTTCCCTTTCTATCTAAACCCAGAGCTAATAA----GGCACTGCTATAGCCTCATAACATTCCTAA-CAAATTGTATTTTTAGCAAATTCCAGACACATATTCTACGCCCAGTTCTCTAACTGAAGCAAACTT-AGTCACCACTTATGACCGTTCGC---------------------A-GGCCG--------TCCTTCCCCCTGGATTGTGAGATTATATCGTTGACGTAAGTTTAAATGCATAGTCCCTAATCATGCAGGCTTCCCAGATCTATCCATATTAGACAAGAACCCTGGTCTCCTGCTACC----------CCAGGTCTTCTTATTCATAATTATA------TG i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30017156 305 - 76506943 CAATTTAATCTTGCCTTTCTATCTGAACCCAGAACTGCTCA----GTCGCTATTATGATCTCATAAAATTCCCAAACAAACTGTATTCTTAACAAATCCCTAAT----GCTCTATGCCCTGTTCTCTGATGGAAGGAAACTC-----AGCACTTAAGATCTTTCTT---------------------A-GGCTG--------TTCTCCCATTTGAATTGTCATTTTATGTCATTTAAGTAAATTTAAATGAATAATCCCTAATCCTACTGTCTTTTGAGATCTTACCATAT----TAG--ACCTTAGTCTAATTCTAAGGGGAATTGGATTAATTCCCCTTATTCATAATTCTG-------- i bosTau4.chr17 I 1689 C 0 s canFam2.chr26 3230995 328 + 42029645 -----TAATCTCCCCTTCCTATCTGAATCTAGACCTACTCACTTGGT------TATAGTCTCATTAAACTCCCAAGCGGATTACATTTGTGGCAACTTGCAAAAA---ATATTCTGTCTACTTCTCTGATTGAAGCAAACTT-----ACCTCTTAAGACCTTTCttaaaaataaaaaaaaaataaaaa-aaaaaGACCTTTCTTAGGCAATCCAGATTGCTATCTTATGTCATTTACATAAATGTAAATGCATTGTCCCCAATGCTACAGTCTTCCCAGACCTTTCCATAT----TAGGAACTTTAGTCTCCTGCTAAT----------CTAAGTCTCCTTATTCACAATTATGATAGAATG i canFam2.chr26 I 1296 C 0 s felCat3.scaffold_51149 296 307 + 941 CAATTTAATCTTCCCTTTCTATCTGAATCCAGAGCTACTCA----GT------TATAGACTCATAAAACTGCCAAGCAGATTATATTTTTAGCAAGTCTCAAAAATATATTCTCTGCCTAGTTCTCTGATTGATGTAAATTTGTACCACCACGTAAAACCTTTCTT---------------------A-GGCTAGCCTCCAATCCTCCAATCTGGATTGCCATTTTATGTCATGTAAGTAAATGTAAATGCACAGGCTCTAATCCTACAGTCTTCCTTGATCTTTCCA-------TAGGGACTTTAGTCTCTTGCTAAT----------CCAGGTCTCCTTATTCATAATTGTG------TG i felCat3.scaffold_51149 N 0 N 0 s equCab2.chr8 64182222 293 - 94057673 ---------------TTTCTTTTTGAACCCAGAGCTACTCA----GTCAC-AGTATAGCCTCATAAAATTCCCAAGCAAATTGTGTTTTCAGCAAGTCCGAAACACACATTCTGTGCCCAGTCCTCTGACTGAAGTAAACTC-CCTCACCACTTCAGACCTTTCTC---------------------A-GGCTA--------TCCTCCCATCTAGACTGCCATCTTGTGTCATTTAAATAAATTTAAATGCATAGTTCCTAATCCTACAGTCTTCCCAGATCTTTCCATATTAGACAGGGACATTAGTCTCCTGCTAAT----------CTAACTCTCCTTACGCATAATTATG-------- i equCab2.chr8 I 1026 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=174367.000000 s hg19.chrUn_gl000223 139983 296 + 180455 AATCTTTTGTTAC-GTGTAAAGCTGCAACTGGCCTAAAACGACGCAGAGCTCCTTTGAGGGAAGAGAATCTACGGTTAGGAATCTACCGTTAGATTTACATGGAGGGGCGGAGAATCTACAGTTAGGAATCTACGGTTAGATTTAC-ATGGACGGGAAAGAAAAGAGGTCCTGGAAAAGTGCGTAAGAGAAATAGACACCTGTA---AAAATAATGAACGACAGGATACAGACCAGCGAAGAACAATGAGAACATTTGGGTATGTGAGACACGATAGAAT-CAACACA-AGATAACCATTCTG s ponAbe2.chr12 304581 294 - 136387465 AATCTTTTGTTAC-GTGTAAAGCTGCAACTGGCCTAAAACGATGCAGAGCGCCTTTGAGGGAAGAGAATCTACGGTTAGGAATCTACCGTTAGATTTACATGGAGGGGAAGAGAATCTACAGTTAGGAATCTATGGTTAGATTTAC-ATGGACAGGAAAGAAAAGAGGTCCTGGAAAAGTGCATGAGAGAAATAGACACCTGTA---AAAATAATGAACGACAGGATACAGACCAGCGAAGAACAATAAGAACA--TGGGTGTGTGAGACACGACAGAAT-CAACACA-AGATAACCATTCTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 265146 296 - 135371336 AATCTTTTGTTAC-GTGTAAACCTGCAACTGGCCTAAAACGACTCAGAGCTCCTTTGAGGGAAGAGAATCTACGGTTAGGAATCTACCGTTAGATTTACATGGAGGGGAAGAGAATCTACAGTTAGGAATCTACGGTTAGATTTAC-ATGGACGGGAAAAAAAAGAGGTCCTGGAAAAGTGCATGAGAGAAATAGACGCCTGTA---AAAATAATGAACGACAGGATACAGACCAGCGAAGAACAATGAGAACATTTGGGTGTGTGAGACACGATAGAAT-CAACACA-AGATAACCATTCTG i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30017461 239 - 76506943 AACCTTTTGTTATAATATAAAACTGCTACTGCCTTAAAACAGTGCAGAACTATTTTTAGGGAC-------------------------------------------------------------GAGGTCCTAGGATTGATATTGGTTTATAATGAAATGGCAGGAAGTCTTGGGAAAGTGTGTGACAGAAATAGATAGCTGTA---AGAATAATTAATGACAGTGTATAGCAAAGAGGAAACTAAGGAGAACATTAGAGTGTGTAAGGTATGATAGAATACAACACAGAGATAACCATTCTA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64182515 237 - 94057673 ACTCTTTCGTTATGGTGTAAAGCTGCTATGGGCCTAAAACAATGCAGAACTATTTTTAGGGAA-------------------------------------------------------------GAGGATCTAGAA-AGGTATTGG-GTATAAGGGAATAGAAGGAGGTTCTGGAAAAGTGCATGAGAGAAATAGACACCTGTA---AGAATGATTAGGGACAATATATAGACAAGTGGAGGCCAATGAGGATGTTTTAATGTGTAAGATATGATAGACTATAATACAAAGATAACCATTCTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3231323 245 + 42029645 -------AATTATGGTGAAAAGCTTCTACTAGCCTAAAATGATGCAGAACTATTTTTATGGAATAG-------------------------------------------GGAAAAACTAT--TTTAGGATCTAGGGTTGGAATTGG-GTATAAAAGAATAAAAAGACATTCTGGAAAAGTCCATGAGAGAAATAGACATCTGTATACTGTAAGAT----GACAGTATACAGACAAGTGGAGACCAGTGAGGACATTTCAGTATGTAAGATATGCTAGAACTGAATACAAAGATAA-CATTCTG i canFam2.chr26 C 0 I 145 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=26014.000000 s hg19.chrUn_gl000223 140279 49 + 180455 TTCCTAGATGATCAGGGACAGTGTTCGG-----------GCATTAAAAGAAGCAGAGTTA s ponAbe2.chr12 304875 49 - 136387465 TTCCTAGATGATCAGGGGCAGTGTTTGG-----------GCGTTAAAAGAAGCAGAGTTa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 265442 49 - 135371336 TTCCTAGATGATCAGGGACAGTGTTTGG-----------GCATTAAAAAAAGCAGAGTTa i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30017700 59 - 76506943 TTCATAGAAGATTAGGGACAGTGATCGGGGCAACTGCATGCA-AAAAGGAAGTAAAGCTA i bosTau4.chr17 C 0 I 24 s equCab2.chr8 64182752 59 - 94057673 TTCATAGAAAATTAGAGGCAGTGCTGGGGACATCTGCATGCATTAAAGGAAGAAGAGTT- i equCab2.chr8 C 0 I 30 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e canFam2.chr26 3231568 145 + 42029645 I a score=153704.000000 s hg19.chrUn_gl000223 140328 598 + 180455 gccgggcccaatggctcacgcctgtaatcccagcactttgggaggccaaggagggcggatcacctgaggccaggagtttgagaccagcctggccaacatggcaaattcccatgtctactaaaaatacgaaaattagctgggcatggtggcatgtgcctgtaatcccagctactggggaggctgaggcaggagaatcgcttgaacctgggagatggagattgcaatgagccaagattgcaatgagccaagatcacgccactgcactccagcctacagagactccatctcaaaaaaaaaaaaaaaaaaaaaaaGAGGTAGAGTTGGGCCAGGCACGCAGTcatggtggctcacgcctgtaattctagcacttgtgctcaggactttgaggccagcctgggcaagatggcaaaa-cctgtctctacaaaaaaaatttt-cagaaaattatctaggcacggtggcatgtgcctgtactccctgctacttgggaggctgagtgggaggaggccaaggctgcaatgaggcatgatcacacccttgcactccagcctgggtgacagagtgagaccctgtctcagaagaaaaaGCAGAGTTGCAACAA s panTro2.chr12 265491 592 - 135371336 gccgggcccaatggctcacgcctgtaatcccagcactttgggaggccaaggagggcggatcgcctgaggccaggagtttgagaccagcctggccaacatggcaaattcccatgtctactaaaaatacgaaaattagctgggcatggtggcatgtgcctgtaatcccagctactggggaggctgaggcaggagaatcgcttgaacctgggagatggagattgcaatgagccaagattgcaatgagccaagatcacgccactgcactccagcctacagagactccagctc------aaaaaaaaaaaaaaaaagaGGTAGAGTTGGGCCAGGCACGCAGTCATggtggctcacgcctgtaattctagcacttgtgctcaggactttgaggccagcctgggcaacatggcaaaa-cctgtctctacaaaaaaaaattt-cagaaaattatctaggcacggtggcatgtgcctgtactccctgctactcgggaggctgagtgggaggaggccaaggctgcaatgaggcatgatcacacccttgcactccagcctgggtgacagagtgagaccctgtctcagaagaaaaagcagagttgcaacaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 304924 573 - 136387465 gctgggcccaatggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcacctgaggccaggagtttgagaccagcctggccaacatgacaaattcccatgtctactaaaaatacaaaaattagctgggcatggtggcatgtgcctgtaatcccagctactggggaggctgaggctcaagaatcgcttgaacctgggaggtgg----------------agattgcaatgagccaagatcgtgccactgcactccagcctacagagactccatttc-----------aaaaaaaaaaaaGAGGTAGAGTTGggccaggcacgcagtcatggtggctcacgcctgtaattctagcacttttgctcaggactttgaggccagcctgggcaacatagcaaaaccctgtctctacaaaaaaaaatttccagaaaattatctaggcacggtggcatgtgcctatactccctgctacttgggaggctgagtgggaggaggccgaggctgcaatgaggcatgatcacacctttgcactccagcctgggtgacagagtgagaccctgtctcagaagaaaaaGCAGAGCTGCAACAA i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I e canFam2.chr26 3231568 145 + 42029645 I a score=7137.000000 s hg19.chrUn_gl000223 140926 20 + 180455 CATGCatt--aaaaaaaaaaaa s ponAbe2.chr12 305497 21 - 136387465 CATGCATT-AAAAGAAAAAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 266083 22 - 135371336 catgcattaaaaaaaaaaaaaa i panTro2.chr12 C 0 C 0 s canFam2.chr26 3231713 20 + 42029645 CATGCATT--AAAGAAAGCAGA i canFam2.chr26 I 145 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I a score=78581.000000 s hg19.chrUn_gl000223 140946 307 + 180455 aaaaaaGTAtggctcacgcctgtaatcccagcactttgggaggccgaagtgggtggatcacgaggtcaggagacgcagaccatcctggctaacatggtgaacccccgtctctactaaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaacaaacaaacgaacaaaaaagtaaa s panTro2.chr12 266105 307 - 135371336 aaaaaaGTAtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagatgcagaccatcctggctaacatggtgaacccccgtctctactaaaaaatacaaaaaattagccaggcatggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctggacgacagagcgagactccgtctcaaaacaaacaaacgaacaaaaaagtaaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 305518 299 - 136387465 AAAAAAGTAtggctcactcctgtaatcccagcactttcggaggccgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaacctcgtctctactaaaaaatacaaaaaattagccgggtgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcttgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcctgggtgatagagcgagactccgtctcaaaaca--------aacaaaaaaGTAAA i ponAbe2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I e canFam2.chr26 3231733 0 + 42029645 C a score=11891.000000 s hg19.chrUn_gl000223 141253 41 + 180455 GTTACAACAACAAATAA--GCATACATGATTTCtatagggacc s ponAbe2.chr12 305817 41 - 136387465 GTTACAACAACAAATAA--GAATACATGATTTCtatagggacc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 266412 41 - 135371336 GTTACAACAACAAATAA--GCATACATGATTTCtatagggact i panTro2.chr12 C 0 C 0 s canFam2.chr26 3231733 28 + 42029645 GTTGCAACAATTGATAAATACATACATG--------------- i canFam2.chr26 C 0 I 18 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 260777 5208 - 134511895 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I a score=165141.000000 s hg19.chrUn_gl000223 141294 360 + 180455 agccctacagagcctgtgggtttttctctttatgtgcggagacgagagattgtagaaataaagacacaaggcaaagagacagaagaaaagacagctgggcccgggggaccactaccaccaagacgcagagaccggtagtggccccgaatgccaggctgcgctgttatttgttggatacaagacaagggcacagggtaaggagtgtgagccacctccaatgataggtaaggtcacgcgagtcacgtgtccactggacaaggggcccttccctgcctggcagccgaggcagagaggggagtggggagggagaacagcttatgtcattatttcttatatgcatttcttggaggaatcaacagc s panTro2.chr12 266453 360 - 135371336 agccctacagggcctgtgggtttttctctttatgtgcggagacgagagattgtagaaataaagacacaaggcaaagagacagaagaaaagacagctgggcccgggggaccactaccaccaagacgcagagaccagtagtggccccgaatgccaggctgcgctgttatttgttggatacaagacaagggcacagggtaaggagtgtgagccacctccaatgataggtaaggtcacgcgagtcacgtgtccactggacaaggggcccttccctgcctggcagccgaggcagagaggggggtggggagggagaacagcttatgtcattatttcttatatgcatttcttggagggatcaacagc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 305858 357 - 136387465 agccctacagggcctgtgggtttttctctttgtgtgcggagacgagagattgtagaaataaagacacaagacaaagagatagaagaaaagacagctgggcct-ggggatcactaccaccaaaacgcagagacaggtagtggccctgaatgccaggctgcgctgttatttgttggatacaagacaagggaacaaggtaaggagtgtgagccacctccaatgatatgtaaggtcacgcgagtcatgtgtccactggacagggggcccttccctgcctggcagccgaggcagagagagag--agagagggagaacagcttatgtcattatttcttatatgcatttcttggagggatcaacagc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 265985 331 - 134511895 agccctatagggtctgtgggattttctccctgtgtgcggagacgagagattgtagaaataaagatgcaagacaaag----agaagaaaagacagctgtgcccgggcgaccactaccaccaagacgcggagactggtagtggccccgaatgcctgactgcgctgttatttgttggatacaaggcaaaagggcagggtcaggagtgtgagtcgtctccagtgataggtaaggtcatgtgagtcacgtgtccaccagacagggggcccttccctacttggcagctgaggcagac--------ggagagagaggacagcttatgccattatttcttctctgcatttc----------------- i rheMac2.chr11 I 5208 I 8 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I e canFam2.chr26 3231761 18 + 42029645 I a score=111357.000000 s hg19.chrUn_gl000223 141654 229 + 180455 ttaatactttcactaattctgctactgctatctagaaggtggagccaggtgtatagggtggaacatgaaagtggaccaggagcatgaccgctgaagcacagcatcacagggagacgtttaggcctctggatggctgcaggcgggcttgactgatgtcaggccttccacaagaggtggtggagcagagtcttccctcatctccccaagggaaagggagactccctttcct s panTro2.chr12 266813 229 - 135371336 ttaatactttcactaattctgctactgctatctagaaggtggagccaggtgtatagggtggaacatgaaagtggaccaggagcatgaccgctgaagcacagcatcacagggagacgtttaggcctctggatggctgcaggcgggcttgactgatgtcaggccttccacaagaggtggtggagcagagtcttccctaatctccccaagggaaagggagactccctttcct i panTro2.chr12 C 0 I 265 s ponAbe2.chr12 306215 229 - 136387465 ttaatactttcactaattctgctactgctatctagaaggtggagccaggcatatggggtggaacatgaaagtggaccaggagcgtgaccgctgaagcacagcatcacagggagacgtttaggcctccggatggctgcaggcgggctttactgatgtcaggccttccacaagaggtggtggagcagagtcttctctaaactcccccagggaaagggagactccctttcct i ponAbe2.chr12 C 0 I 53 s rheMac2.chr11 266324 222 - 134511895 ttagtactttcactaattctgctactgctagctagaaggcagagccaggtgtacagagcggaacatggaagtgaaacaggagcacgaccgctggagcacagcatcacagggagacggttaggcctcagga-ggctgtgggcgggcctga-----gtcaggccttccacaagaggtggtggagcagagtcttctctaa-cttccccgggcaaagggagactccctttctt i rheMac2.chr11 I 8 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I e canFam2.chr26 3231761 18 + 42029645 I a score=183407.000000 s hg19.chrUn_gl000223 141883 371 + 180455 ggtctgctaagtaacgggtgccttcccaggcgctggcgcgaccgctagaccagggagccctctagtggccctgtccgggtgtgacagaaggctcacacttgtcttctggtcacttctcaccgtgtcccttcagttcctatctctgtatggcctggtttttccaaggttataattgtagaacaaacattattataatattggaataaagagtaatgctacaaactaatgattg---atattcatatataatcatatctataatctatttctagtataactattcttattctatatattttctttattatactggagcagcttgtgccctcggtctcttgcctcggcacctgggtggtttgcggcacacaGATTTC s rheMac2.chr11 266546 365 - 134511895 ggtcagctaagta--gggcgccttcccaggcgctggcactaccgctagaccagggagccctctagtggccctgtccgggcgtgacag-aggctcacactcgtcttccggtcacttctcaccgtgtcccttcagctcctctctctgtatggcctggtttttcctaggttatgattgtagaacaaatattattgtaatattggaataaagagtgatgctacaaactaatgattgataatattcatatataatcatacctatattctatttctagtataactattctc------tgtattttctttattatactggaacagctcgtgccctcggtctcttgcctcagcacccgggtggtttgctgcacacaGATTTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 306497 368 - 136387465 ggtctgctaagtaacgggtgccttcccaggcgccggcgcgaccgctagaccagggagccctctagtggccctgtccaagtgtgacagaaggctcacacttgtcttctggtcacttctcaccgtgtcc---cagttcctatctctgtatggcctggtttttccaaggttataattgtagaacaaagattattataatattggaataaagagtaatgctacaaactaatgattg---atattcatatatcatcatatctataatctatttatagtataactattcttattctatatattttctttattatactggaacagcttgtgccctcggtctcttgcctcggcacctgggtggtttgctgcacacaGATTTC i ponAbe2.chr12 I 53 C 0 s panTro2.chr12 267307 368 - 135371336 ggtctgctaagtaacgggtgccttcccaggcgctggcgcgaccgctagaccagggagccctctagtggccctgtccgggtgtgactgaaggctcacacttgtcttccggtcacttctcaccgtgtcccttcagttcctatatctgtatggcctggtttttccaaggttataattgtagaacaaacattattataatattggaataaagagtaatgctacaaact---gattg---atattcatatataatcatatctataatctatttctagtataactattcttattctatatattttctttattatactggagcagcttgtgccctcggtctcttgcctcggcacctgggtggtttgcggcacacaGATTTC i panTro2.chr12 I 265 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017759 24 - 76506943 I e equCab2.chr8 64182811 30 - 94057673 I e canFam2.chr26 3231761 18 + 42029645 I a score=42354.000000 s hg19.chrUn_gl000223 142254 44 + 180455 TTTTACTTCTATATTTTTAAATTATTTATCTTAGGGTTCTTTTG s panTro2.chr12 267675 44 - 135371336 TTTTACTTCTATATTTTTAAATTATTTAGCTTAGGGTTCTTTTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 306865 44 - 136387465 TTTTACTTCTATATTTTTAAATTATTTAGCTTAGGGTTCTTTTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 266911 44 - 134511895 TTTTACTTCTATATTTTTAAATTATTTAGCTTAAGGTTATTTTA i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64182841 44 - 94057673 TTTTGTTTCTGTATTTTTGATTGATTTAGCTTAACATTTTTTCC i equCab2.chr8 I 30 I 6 s bosTau4.chr17 30017783 43 - 76506943 -TTTGTTTCTGTATTTTTCAGCGATTTAGCTTAGGTTTTTGTTG i bosTau4.chr17 I 24 I 12 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e canFam2.chr26 3231761 18 + 42029645 I a score=51127.000000 s hg19.chrUn_gl000223 142298 35 + 180455 ATTGGCATGGAAACAGATGCTGGGAATGCCCTACA s panTro2.chr12 267719 35 - 135371336 ATTGGCATGGAAACAGATGCTGGGAATGCCCTACA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 306909 35 - 136387465 ATTGGCATGGAAACGGATGCTGGGAATGCCCTACA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 266955 35 - 134511895 ATTGGCATGGAAATGGATGCTGGGAATGCCCTACA i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30017838 35 - 76506943 ATTGGCATGGGAATTGATGCTGGAAATGAAGTACA i bosTau4.chr17 I 12 I 2698 s equCab2.chr8 64182891 35 - 94057673 ATTGGCATGGAAATTGATGCTGGAAACACCATATG i equCab2.chr8 I 6 C 0 s canFam2.chr26 3231779 35 + 42029645 ATGGGTATGGGAACTGATGCTGGAAATACCATATA i canFam2.chr26 I 18 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I a score=40439.000000 s hg19.chrUn_gl000223 142333 43 + 180455 TAATTACTACAGTAAGTTTGTATTAAGACTCTTTCGAAGTAAA s panTro2.chr12 267754 43 - 135371336 TACTTACTACAGTAAGTTTGTATTAAGACTCTTTCGAAGTAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 306944 43 - 136387465 TAATTACTACAGTAAGTTTGTATTAAGACTCTTTTGAAGTAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 266990 43 - 134511895 TAATTACTACAGTAAGTTTGTATTAAGACTCTTTTGAAGTAAA i rheMac2.chr11 C 0 C 0 s equCab2.chr8 64182926 43 - 94057673 TAATTAATGCAGTGAATTtgtattaagactctttggaggcaaa i equCab2.chr8 C 0 I 4342 s canFam2.chr26 3231814 29 + 42029645 TAATT----CATTAAGTTtgtattaagactctt---------- i canFam2.chr26 C 0 I 9 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I a score=331292.000000 s hg19.chrUn_gl000223 142376 641 + 180455 AG--TGAATTTGTggctgggtgcaattgctcatacctgtaatcccagcactttgggaggtcaaggtgggtggatcactagagctcaggagttcgagagcagcctgggcaacatggtgaaaccccgtctttacaaaaattaaccaggcattaggctggacacagtggctcaagcctgtaatcccagcagtatgggaggccgaggtaggcggatcacctgaggtcaggagtttgagactagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggcatggtcgtatgtgcctgtaatcccaactactcgggaggctggggcatgagaatcacttgaacccaggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagctagactctgcctcaaaaaaaaaaaaa------ttagctaggcatggtggcacgtgcctgtggtcccagctactcaggaggctgaggtgggaggatcacctgagcctggaaggtggagatgcaaactgtatttgcaccactgcattcccattggttcacaaagtaagatcctgtctcaaacagaaagaaatgaaaagaaaaaaaaaaGAGTAAATTTGTAATAAGGCTC s rheMac2.chr11 267033 645 - 134511895 AGGGTGAATTTGTggctgggtgcaattgctcatacctgtaatcccagcactttaggaggtcaaagtgggtggatcactagagctcaggagatcgagagcggcctgggcaacatggtgaaaccctgtctttacaaaaattaaccaggcattagtctggacgcagtggctcaagcctgtaatcccagcagtatgggaagccaaggtgggcggatcacctgaggtcaggagttcgagaccagcctgaccaatatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggcatggtggtatgtgtctgtaatcccaactacttgggaggctgggacatgagaatcacttgaacccaggaggcagaggctgcaatgagctgagatcgtgccattgcactccagcgtgggcaacagagttagactttgcctcaaaaaaaaaaaaa-aaaaattagccaggcatggtggcatgtacctgtgctcccaactactcaggaggctgagatggcaggatcacttgagcctgggaggtgg-ggtgcaaactgtatttgcaccactgcactcctgctggttcacaaagtaagatcctgtctcaaacagaaagaaatgaaaagaaaaaaaa--GAGTAAATTTGTAATAAGGCTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 306987 642 - 136387465 AGAGTGAATTTGTggctgggtgcaattgctcatacctgtaatcccagcactttgggaggtcaaggtgggtggatcactagagctcaggagttcgagagcagcctgggcaacatgctgaaaccctgtctttacaaaaattaaccaggcattaggctggacacagtggctcaagcctgtaatcccagcagtctgggaggccaaggtagtcggatcacctgaggtcatgagttcgagactagcctgaccaacatggtgaaactctgtctctactaaaaatacaaaaaattagccaggcatggtcgtatgtgcctgtaatcccaactattcaggaggctggcgcatgagaatcacttgaacccaggtggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggca--agagctagactctgcttcaaaaaaaaaaaaa-----attagccaggcatggtggcatgcgcctgtggtcccagctactcaggaggctgaggtgggaggatcacttgagcctgggaggtagaggtgcaaactgtatttgcaccactgcattcccattggttcacaaagtaagatcctgtctcaaacagaaagaaatgaaaagaaaaaaaaaaGAGTAAATTTGTAATAAGGCTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 267797 648 - 135371336 AGAGTGAATTTGTggctgggtgcaattgctcatacctgtaatcccagcactttgggaggtcaaggtgggtggatcactggagctgaggagttcgagagcagcctgggcaacatggtgaaaccccgtctttacaaaaattaaccaggcattaggctggacacagtggctcaagcctgtaatcccagcagtatgggaggctgaggtaggcggatcacctgaggtcaggagtttgagactagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggcatggtcgtatgtgcctgtaatcccaactactcgggaggctggggcatgagaatcacttgaacccaggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagctagactctgcctcaaaaaaaaaaaaaaaaaaattagctaggcatggtggcatgtgcctgtggtcccagctactcaggaggctgaggtgggaggatcacttgagcctggaaggtggaggtgcaaactgtatttgcaccactgcattcccattggttcacaaagtaagatcctgtctcaaacagaaagaaatgaaaagaaaaaaaaa-GAGTAAATTTGTAATAAGGCTC i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231843 9 + 42029645 I a score=97782.000000 s hg19.chrUn_gl000223 143017 150 + 180455 tgccagaaatataactcaaactagcttagactaatagaggaaatctattggcttttataaccaaagaagtcgatctgtaggcttcaggaatagctgactccagggcttcaaTCAGCA-TAGGATATGCTAATTTAAAATAACTAAAAGggc s panTro2.chr12 268445 150 - 135371336 tgccagaaatataactcaaactagcttagactaatagaggaaatctattggcttttataaccaaagaagtcgatctgtaggcttcaggaatagctgactccagggcttcaaTCAGCA-TAGGATATGTTAATTTAAAATAATTAAAAGGgc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 307629 151 - 136387465 tgccagaaatataactcaaacttgcttagactaatagaggaaatctattagcttttataaccaaagaagtcgatctgtaggcttcaggaatagctgactccagggcttcaaTCAGCAGTAGGATATGCTAATTTAAAATAACTAAAAGGGC i ponAbe2.chr12 C 0 I 1 s rheMac2.chr11 267678 151 - 134511895 tgccagaaatataactcaaactagcatagactaacagaagaaatctatgagcctttataactgaaggagccgatctgaaggcttcaggaatagctgactccaggGCTACAATCAGCACTAGGATATGTTAATCTAAAACAACTAAAAGGgc i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3231852 120 + 42029645 tgccagaaatatagctcaaagtagtttaaactaacagaggaaatgtattaccttttctaactgaagaagtc-------aagcttcaagaatggctggatccaggacttcaatcacctatagactatg------------------------ i canFam2.chr26 I 9 I 5806 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I a score=16613.000000 s hg19.chrUn_gl000223 143167 61 + 180455 ctggtgtgctggctcacgcctataatcccagcactttgggaggccgaggtgggaggagtta s panTro2.chr12 268595 61 - 135371336 ctggcgtgctggctcatgcctataatcccagcactttgggaggccgaggtgggaggagtta i panTro2.chr12 C 0 C 0 s rheMac2.chr11 267829 61 - 134511895 ctggcgtgctggctcatgcctgtaatcccagcactttaggaggccgaggtgggaggaGTTA i rheMac2.chr11 C 0 M 5943 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 307780 1 - 136387465 I e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=6640.000000 s hg19.chrUn_gl000223 143228 70 + 180455 agagaccagcctggccaatatgtttaaaccccatctctactaaaaatataaaaaGTTTggccaggtgcgg s panTro2.chr12 268656 70 - 135371336 agagaccagcctggccaatatgtttaaaccccatctctactaaaaatataaaaaGTTTggccaggtgcgg i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 307780 1 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=623743.000000 s hg19.chrUn_gl000223 143298 2337 + 180455 tggctcacgcctgtaatcccagcactctgggaggccaaggcagccagatcacaaggtcaggagatcaagaccatcctggctaacatggtgaaaccccgtctctactaaaaaatacaaaaaattagccgggcttggtggtgggcgcctgtagtcctagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagcagagatcgtgccactgcattccaggctgggcgacagagcgagactccgtctcaaaTGATAGTAATAATAAACATAATAAAAAACATAAAATCAgccgggcatggtggctcaagcctgtaatcccagcactttgtgaagccgaggcgggcagatcacgaggtcaggagatgcagaccatcctggctaacaaggtgcaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggtgcacgcctgtaatcccagctactcgagaggctgaggcagaatctgggaggtagaggttgcagtgagccgagatcacgccactgcactccagcctgggctacagagcaagactccgtctcaaataataataataataataataataataataataataataaaataactaaaaggatctgactgggtgtgggtggctcatgcctgtaatcccagtactctgggaggccaagtcgggtggatcacctgaggtcaggagatggagaccagcccggccaacatggcgaaaccccgtctccactaaaaatacaaatttagccaggcgtggcgggcgtggtggcaggcacctgtaattccagctactcagggggctgaggcaggagagtcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctggatgacaagagcgaaactcagtctcaaaaataaataaataaataaaataaaaTAActgaaaggatcagaatctagtttaaagagagtttaagtgtaaagtttgaggacagccacctgggaagtataaatcttaaagaaagaaagttcatattttgaagtgtagaagtttgggattgtttatatagacaatgtttaggaaagtttagcagaactttaattctttacatataaggcttaatgtagagttataatggcctgattagttaaggtagtttctttagggggaagatatactcactattttatattgaagatgtagtagttatgggttttctgtgttatttggtctgagttaggttaggtacaggacgataaaaaggcaTATATGTTAAATACATACaattataaatatatatatttaCAACTTGTATAGATATATAAATtgtcgtgggggagcagtgactatatgggaaagtggaataggagtaaaagaatttaccaagacagggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatcctggccaacatggcgaaactccgtctctaccaaaatacaaaaaattagccaggcgtggtggaacacacctgtagtcccagctacttgggaggctgaggcagtggaatagcttgaacccaggagttggaggttgcagtaagccgagatcgcgcccctgcactccagcctggtgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaatttaccaagataggcagatttattagagaaagtaggaaaatactttcaagaaggtaacaggcagccagcaagagaggaactgactgcaaggaaacaaaggtttcctggagatgtaataggtggttcttgggctgcagagtgctacgttcagttctgacaacaccaaggttgcaggaagctgacgtgcattttttgtatcagccgaggatctggtgatagctggccacaggaagattgtgagttatgacagctctgtgtcctggaccattaagaaaggcagacttacagcttatctgctttctcttatttcgtattttgctttcccctgctcccactaccctgtctctttttccctaattaggactccacaTTAATACATATTAATTTACAAAAGATAAGTGATTGTATGGGGAGGAGGAAAAAAGAAGTCAAGTCTTGGCAAGGCAGTTTGGAGAAGGAGGGATAAAGAGATGCAGAAGCAGAAGGGTGAGAAGTTTTGGCAGTTTCCTTTTTTAATATATCAATAGTTCTAAAGAGTTTAATTTTTTCTGTAGGGAAAGAAATTTTC--AGTCTCTTTTAGATGCTTTTTAGTATTATTGAAAGTAACTTTCAATTTTTTAAAAATTT s ponAbe2.chr12 307781 2324 - 136387465 tggctcacgcctgtaatcccagcactttgggagcccaagacggccagatcacaaggtcaggagattgagaccatcctggctaatacggtgaaacctcgtctctactaaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggaggttgcagcgagcagagatcgtgccactgcactccaggctgtgcgacagagcgagactccgtctcaaaTGATAGtaataataaacataataaaaaaaataaaatCagccgggcgtggtggctcacgcctgtaatcccagcactttgtgaagccgaggcaggcagatcacgaggtcaggagatgcagaccatcctggctaacaaggtgcaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggtgcacgcctgtaatcccagctactcaagaggctgaggcagaatctgggaggtggaggttgcagtgagccgagatcacgccactgcactccagcctgcgctacagagcaagactccgtctcaaataataataatcataataa--------------aaaataaaaTAACTAAGAGGATCTGACTGGGTGTGggtggctcatgcctgtaatcccagtactctgggaggccaagtcgggtggatcacctgacgtcaggagatggagaccagcctggccaacatagcgaaaccccgtctccactaaaaatacaaatttagccaggcgtggtgggcgtggtggcaggcgcctgtaattccagctactcaggaggctgaggcaggagagtcgcttgaacccgagaggtggaggttgcagtgagccgagatcgcgccattgcactccagcctggacgacaagagcgaaactcagtctcaaaaataaataaataaataaaataaaataactgaaaggatcagaatctagtttaaagagagtttaagtgtaaagtttgaggatagccacctgggaagtataaatcttaaagaatgaaatttcttattttgaagtgtagaagtttgggattgtttatatagacaatgtttaggaacgtttagcagaactttaattctttatatataaggcttaatgtagagttataatggcctgattagttaaggtggtttctttagggggaagatatactcactattttatattgaagatgtagtagctacgggttttctgtgttatttggtctgagttaggttaggtacaggacaataaaaaggcaTATATGTTAAATACATACaattataaatatatatatttaCAACTTGTATAGATATATAAATtgttgtgggggagcagtgactatatgggaaagtggaataggagtaaaagaatttaccaagacagggccagttgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcatgaggtcaggagatcgagaccatcctgaccaacatggtgaaaccccgtctctaccaaaatacaaaaaattagccaggcgtggtgggacacacctgtagtcccagctacttgggaggctgaggcagtggaatggcttgaaccccggaggtggaggttgcagtgagccgagattgcgtccctgcactccagcctggtgacagagcaagactccgtctcaaaaaaaaaaaaaaaagaattta-caagacaggcagatttattagagaaagtaggaaaatactttcaagaaggtaacaggcagccagcaagagaggaactgactgcagggaaacaaaggtttcctggagatgtaataggtggttcttgggctgcagagtgctacgttcagttctgacaacaccaaggttgcaggaagctgacttgcattttttgtatcagccgaggatctggtgacagctgggcacaggaagattgtgagttatgacagctctgtgtcctggaccattaagaaaggcagacttacagcttatctgctttctcttatttcttattttgctttcccctgctcccactaccgtgtctctttttccctaagtaggactccacaTTAATACATATTAATTTACAAAAGATAAGTGACTGTATGGGGAGGAGGAAAAAAGAAGTCAAGTCTTGGCAAGGCAGTTTGGAAAAGGAGGGATAAAGAGATGCAGAAGCAGAAGGGTGAGAAGTTTTGGCGGTTTCCTTTTTTAATATATCAATAGTTCTAAAGAGTTTAATTTTTTCTGTAGGGAAAGAAATTTTCAGAGTCTCTTTTAGATGCTTTTTAGTATTATTGAAAGTAACTTTCAATTTTTTAAAAATTT i ponAbe2.chr12 I 1 C 0 s panTro2.chr12 268726 2307 - 135371336 tggctcacgcctgtaatcccagcactttgggaggccaaggcagccagatcacaagctcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatataaaaaattagccgggcttggtggcgggcgcctgtagtcctagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagcagagatcgtgccactgcattccaggctgggcgacagagcgagactccgtctcaaaTGATAGTAATAATACACATAATAAAAAACATAAAATCagccaggcgtggtggctcaagcctgtaatcccagcactttgtgaagccgaggcgggcagatcacgtggtcaggagatgcagaccatcctggctaacaaggtgcaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggtgcacgcctgtaatcccagctactcgagaggctgaggcagaatctgggaggtggaggttgcagtgagccgag----tagcactgcactccagcctgggctacagaccaagactccgtctcaaataataataataataataa---------------------aataaCTAAAAGGATCTGACTGGGTGTGggtggctcatgcctgtaatcccagtactctgggaggccaagtcgggtggatcacctgaggtcaggagatggagaccagcccggccaacatggcgaaaccccgtctccactaaaaatacaaatttagccaggtgtggcgggcgtggtggcaggcacttgtaattccagctactcagggggctgaggcaggagagtcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctggacgacaagagcgaaactcagtctcaaaaataaataaataaataaaataaaataaCTGaaaggatcagaatctagtttaaagagagtttaagtgtaaagtttgaggacagccacctgggaagtataaatcttaaagaatgaaagttcatattttgaagtgtagaagtttgggattgtttatatagacaatgtttaggaaagtttagcagaactttaattctttatatataaggcttaatgtagagttataatggcctgattagttaaggtagtttctttagggggaagatatactcactattttatattgaagatgtagtagttatgggttttctgtgttatttggtctgagttaggttaggtacaggacgataaaaaggcaTATATGTTAAATACATACaattataaatatatatatttaCAACTTGTATAGATATATAAATtgttgtgggggagcagtgactatatgggaaagtggaataggagtaaaagaatttaccaagacagggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatcctggccaacagggtgaaactccgtctctaccaaaatacaaaaaattagccaggcgtggtggaacacacctgtagtcccagctacttgggaggctgaggcagtggaatagcttgaacccaggagttggaggttgcagtaagccgagattgcgcccctgcactccagcctggtgacagagcaagactccgtctcaaaaaaaaaaagaa-----tttaccaagacaggcagatttattagagaaagtaggaaaatactttcaagaaggtaacaggcagccagcaagagaggaactgactgcaaggaaacaaaggtttcctggagatgtaataggtggttcttgggctgcagagttctacgtttagttctgacaacaccaaggttgcaggaagctgacgtgcattttttgtatcagctgaggatctggtgatagctggccacaggaagattgtgagttatgacagctctgtgtcctggaccattaagaaaggcagacttacagcttatctgctttctcttatttcttattttgctttcccctgctcccactaccctgtctctttttccctaattaggactccgcaTTAATACATATTAATTTACAAAAGATAAGTGATTGTATGGGGAGGAGGAAAAAAGAAGTCAAGTCTTGGCAAGGCAGTTTGGAGAAGGAGGAATAAAGAGATGCAGAAGCAGAAGGGTGAGAAGTTTTGGCAGTTTCCTTTTTTAATATATCAATAGTTCTAAAGAGTTTAATTTTTTCTGTAGGGAAAGAAATTTTC--AGTCTCTTTTAGATGCTTTTTACTATTATTGAAAGTAACTTTCAATTTTTTAAAAATTT i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=364881.000000 s hg19.chrUn_gl000223 145635 760 + 180455 TAGACTCAGTTTTTAAAAATTATGCACGTAAATAAACTAATTAAGGTATTTTTAATGTCATTTCATTTTGGTCTTTGTAGTTTGGGGTCTTTATGGGTTAAATAAGACCATTTTAAAAGATATTGACAGGAGGTCGCATCATAAGTACTAT------ATATGAATTTAGCTGGAGTTACTTAAAGGTATA---TATATAtttttttttttgagatggagtttcgctcttttgcccagactggaatacggtggcacaatttcagctcactgcaacctccacctttctgtttcaagcaattctcttgcctcagactcccaagtagctgggattacaggcgccggccaccatgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggacaggctggtctcgaactcctgaccttgtgctccacccacctcagcctcccaaagcactgagattaccggcg-tgaggcactgcatccagccATTAAAGGTGTATTTCTTTTGAAGGGGAAAGACTCAGTTTTAGATGGATGAATGTCCATAATTTGGGGTTTTTGTTTTAAAGATCAAAGACTGAAAGGGAAAGAGTTGTTGGATCTGGTATGCTGCTTAATAAGGATTATTTATTGAAGAGTCACT---------------TTTCAATAGATGTCTTGGTGAAACCCAGTAATTTTGGGCACTTAGGGCACTAGGAGATTTTTGTATTTTTTTTGTTGAGGGGAGTCTTATGGGTCCAACGTATGTCATGAACGATGAGCTTAA s papHam1.scaffold36733 2930 773 - 12949 TAGACTCAGTTTTTAATAATTATGTTCATAAATGAACTAATTTAGGTATTTTTAATGGCATTTCATTTTGGTCTTCGTAGTTT-GGGTCTTTATGGGTTAAATAAGACCATTTTAAAAGATACTGATGGGAGGTCACATCATAAGTACTATTTATGAATATGAATTTAGCTGGAGTTACTTAAAGGTGTA---------ttttttttttggagacggagttttcctcttttgcccagactggaatgcagtggcacgatctcagctcactgcaacctccacctttctgtttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccaacacacccagctaatttttgtattttcagtagtgacaaggtttcagcacgttggtcaggctggtctcgaattcctgacctggtactctg-ccaccttggcctcccatagtgctgggattacaggcg-tgagccactgcatccggccATTAAAGGTGTATTTCTTTTGAAGGGTAAAGACTCAGTGTTAGATGGACAATTGTCCATAATTTTGGGTTTTTGTTTTAATGGTCAAAGACCGAAAGGGAAAGAGTTGTTGGATCTGGCATGCTGCTTAATAAGGATTATTTCTTGAAGAGTCACCCATGAGTCACTTTTTTCCTCTTATATGTCTTGGTGAAACCCAGTAATTTGGGGCACTTAGGGCACTAGGATATTTTTGTATGTTTTTTGTTGAGGGGAGTCTTATGGGTCCAATGTATGTCATGAAGGATGAGCTTAA i papHam1.scaffold36733 N 0 I 2 s ponAbe2.chr12 310105 768 - 136387465 TAGACTCAGTTTTTAAAAATTATGCACATAAATAAACTAATTAAGGTATTTTTAATGTCATTTCATTTTGGTCTTTGTAGTGTGGGGTCTTTACGGCTTAAATAAGACCATTTTAAAAGATATTGACAGGAGGTCGCGTCATAAGTACTAT------ATATGAATTTAGCTGGAGTTAGTTAAAGGTGTA----ttttttttttttttttgagacggagtttcattcttttgcccagactggaatgcagtggcaaaatttcggctcactgccacctctacctttctgtttcaagcgattctcctgcctcagactcccaagtagctgggattacaggcgccggccaccatgcccggttaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcgaattcctgacctcgtgctccgcccacctcggcctcccaaagtgctgagattaccggcgttgaggcactgcatccagccATTAAAGGTGTATTTCTTTTGAAGGGGAAAGACTCAGTTTTAGTTGGATGATTGTCCATAATTTGGGGTTTTTGTTTTAATGATCAAAGACCGAAAGGGAAAGAGTTGTTGGATCTGGTATGCTGCTTAATAAGGATTATTTATTGAAGAGTCACCCATGAGTCA------CTTTTTTAGATGTCTTGGTGAAA-CCAGTAATTTTGGGCACTTAAGGCACTAGGAGATTTTTGTATGTTTTTTGTTGAGGGGAGTATTACGGGTCCAACGTATGTCATGAACGATGAGCTTAA i ponAbe2.chr12 C 0 I 3734 s panTro2.chr12 271033 763 - 135371336 TAGACTCAGTTTTTAAAAATTATGCACGTAAATAAACTAATTAAGGTATTTTTAATGTCATTTCATTTTGGTCTTTGTAGTTTGGGGTCTTTATGGGTTAAATAAGACCATTTTAAAAGATATTGACAGGAGGTCGCATCATAAGTACTAT------ATATGAATTTAGCTGGAGTTACTTAAAGGTGTAttttttttttttttttttttgagacggagtttcgctcttttgcccagactggaatacagtggcacaatttcagctcactgcaacctccacctttctgtttcaagcaattctcctgcctcagactcccaaatagctgggattacaggcgccggccacgatgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcgtgctccacccacctcagcctcccaaagcactgagattaccggcg-tgaggcactgcatccagccATTAAAGGTGTATTTCTTTTGAAGGGGAAAGACTCAGTTTTAGATGGATGAATGTCCATAATTTGGGGTTTTTGTTTTAAAGATCAAAGACTGAAAGGGAAAGAGTTGTTGGGTCTGGTATGCTGCTTAATAAGGATTATTTATTGAAGAGTCACT---------------TTTCAATAGATGTCTTGGTGAAACCCAGTAATTTTGGGCACTTAGGGCACGAGGAGATTTTTGTATGTTTTTTGTTGAGGGGAGTCTTATGGGTCCAACGTATGTCATGAACGATGAGCTTAA i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=89129.000000 s hg19.chrUn_gl000223 146395 185 + 180455 AGTTTCACAAAACCTAAGTCACTAAATTATCTTGTGGCTGGGAGAAAGAGTGTCTTATCTTTAAGACTTATCTCTGTCTTTATACAAAG-TTTTTTTTACTGGCTTtggtcatttaaaatgggacttcagatgtgccaaatgaactgaacttaagagtttagccagttttttttttttttaaactt s papHam1.scaffold36733 3705 185 - 12949 AGTTTCACAAAACCTTAGTCACTAAGCTATCTTTTGGCTGGGAGAAATAGTGTCTTATCTTTAAAACTTATCTCTGTCTTTATAGAAAG-TTTCTTTTATTGGCTTtggtcatttaaaatgggaccttagatatgtcaaatgaactgaacttaagagtttagccagtttttttttttttttaactt i papHam1.scaffold36733 I 2 C 0 s ponAbe2.chr12 314607 184 - 136387465 AGTTTCACAAAACCTAAGTCACTAAGTTATCTTTTGGCTGGGAGAAAGAGTGTCTTATCTTTAAGACTTATCTCTGTCTTTATAGAAAGTTTTTTTTTACTGGCTTtggtcacttaaaatgagactttagacatgtcaaatgaactgaacttaagagtttagccagttttttcttttta--aacat i ponAbe2.chr12 I 3734 C 0 s panTro2.chr12 271796 184 - 135371336 AGTTTCACAAAACCTAAGTCACTAAATTATCTTGTGGCTGGGAGAAAGAGTGTCTTATCTTTAAGATTTATCTCTGTCTTTATAAAAAG-TTTTTTTTACTGGCTTtggtcatttaaagtgggacttcagatgtgccaaatgaactgaacttaagagtttagccagtttttttttttttt-aactt i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=13181.000000 s hg19.chrUn_gl000223 146580 22 + 180455 acaagttttacttaagccatgg s panTro2.chr12 271980 22 - 135371336 acaagttttacttaagccatgg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 314791 22 - 136387465 ataagtttcacttaagccatgg i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 3890 22 - 12949 ataagttttacttaagtcatgc i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_87652.1-59871 9841 22 - 59871 GCAGTTTTTTCTTTGGCCAGGG i otoGar1.scaffold_87652.1-59871 N 0 N 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=360786.000000 s hg19.chrUn_gl000223 146602 738 + 180455 aat-ttttttttagagagagaaactgttttctttcctgaccaaaattggaatgaaagaaaaggccatggccatgctcagtggctcatgcctgtaatcccagcactttgggaggccaagacaggcggatcacctgaggtcatgagttcgacaccagcctggccaacatggtgaagcctcgtctctacaaaaatacaaaaaattagccaggcatgatggtgggtgcctgtaatcccagctactcggggggcagaggcgggagaattgcttcaacccaggaggcagaggtagcagtgaactgagatcgcgccactgcactccagcctgggtgacagagcaagactccatctc---aaaaaaaaaaaaaaaaaaa-----aggcgtataaattctagtaagtcatttaataaa--------tgacacgcttaacctcggagaaaagtgaaaatcataaatctgtgaacagcaaaattttctgagaacaaaaacaaaactaccttaaagcagaattttaattttagctctgttgagcatggaattggtttgcttaaataaagt-tgaatctcagttaGAAGCAGGGCAATGTGggctgggtacggtggctcaggtctgtaatcccagcactttgggagtccgagacgcatggatcaccagaggtcaggagtttgagaccagccttgccaacatggtgaaacccatctctactaaaaatacaaaaag-tagctgggagtggctgggcgcagtggctcacgcct s panTro2.chr12 272002 736 - 135371336 aat-ttttttttagag-gagaaactgttttctttcctgaccaaaattggaatgaaagaaaaggccatggccatgctcagtggctcatgcctgtaatcccagcactttgggaggccaagacaggcggatcacctgaggtcatgagttcgacaccagcctggccaacatggtgaaacctcatctctacaaaaatacaaaaaattagccaggcatgatggtgggtgcctgtaatcccagctactcgggggtcagaggcgggagaattgcttcaactcaggaggcagaggtagcaatgaactgagatcgcgccactgcactccagcctgggtgacagagcaagactccatctc----aaaaaaaaaaaaaaaaaa-----aggcgtataaattctagtaagtcatttaataaa--------tgacacacttaacctcggagaaaagtgaaaatcataaatctgtgaacagcaaaattttctgagaacaaaaacaaaactaccttaaagcagaattttaattttagctctgttgagcatggaattggtttgcttaaataaagt-tgaatctcagttaGAACCAGGGCAATGTGggctgggtacggtggctcaggtctgtaatcccagcactttgggagtccgagacgcatggatcaccagaggtcaggagtttgagaccagccttgccaacatggtgaaacccatctctactaaaaatacaaaaag-tagctgggagtggctgggcgcagtggctcacgcct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 314813 750 - 136387465 aatattttttttagagagagaaactgttttctttcctgaccaaaatttgaatgaaaggaaaggccatagccatgctcagtggctcacacctgtaatcccagcactttgggagggcaagacgggcggatcacctgaggtcatgagttcgacaccagcctggccaacatggtgaag-cttgtctctacaaaaatacaaaaaattagccaggcatgatggtgggcgcctgtaatcccagctactcggggggcagaggtgggagaattgcttcaacccaggaggcagaggttgcagtgaactgagatcgtgccactgcactccagcctgggtgacacagcaagattccatctgaaaaaaaaaaaaaaaaaaaaaa-----aggcgtataaattctagtaagtcatttaataaataacatactaacatacttaacctcggagaaaagtgaaaatcataaatctgtgaacagcaaaattttctgagaacaaaaacaaaactaccttaaagcagaattttaattttagctctgttgagcatggaattggtttgcttaaataaagtctgaatctcaATTAGAACCGGGGCAATGTGggctgggtacggtggctcaggtctgtaatcccaacactttgggagtccgagacgcatggatcacctgaggtcaggagtttgagaccagccttgccaacatggtgaaacccatctctactaaaaatacaaaaag-tagctgggagtggctgggcgcagaggctcacgcct i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 3912 743 - 12949 aatatttttttgagagagagaaac--ttttctttcctggccaaaatttgaatgggagaaaaggccatggccatgcttggtgactcatgcctgtaatcctagcactttgggaggccaaggcaggcagatcacctgaggtcatgagttagagaccagcttggccaacatggtgaaaccccgtctctacaaaaacacaaaaaattagccaggcatgatggtgggtgtctgtaatcccagctactcaagaggcagagatgggagaattgcttgaacccagaaggcagaggttgcagtgagccgagatcatgccactgtgctccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaagggaggggcgtataaattctagtgagtcatttaataaa--------taacac----aacctcagagaaaagtgaaaatcataaatctgtgaacagcagcattttccgagaacaaaaacaaaaccaccttaaagcagaattttaattttagctctgttgagcacggaattgggttgcttaaataaagtctgaattTCAATTAGAACCGGAGCAATGTGggccaggtgcagtggctcaggcctgtaatcccagcactttggcaggctgaggcgggtggatcaactgaggtcagaagtttgagaccagcctggtcaacatggtgaaacccatgtctactaaaaatacaaaaaattagccgggagtggctgggtgctgtggctcacgcct i papHam1.scaffold36733 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=50984.000000 s hg19.chrUn_gl000223 147340 208 + 180455 gtaatcccagcacttcgggaggccgaggcaggcggatcacgaggttaagagatcaagatcagcctgaccaacatggtgaaaccacgtctctactaaaaatacaaaaattagccgggcgtggtggcgcacgcctgcaatcccagctactcgggaggctgaggcaggagaatcacttgaactcaggaggcggaggctgcagtgagccgat s ponAbe2.chr12 315563 208 - 136387465 gtaatcccagcactttgggaggccgaggcgggtggatcacgaggttaagagattgagatcagcctggccaacatggtgaaaccccgtctcttccaaaaatacaaaaattagccgggcgtggtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactcaggaggcagaggttgcagtgagccgat i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 4655 208 - 12949 gtaatcctagcactttgggaggccaaggtgggtggatcacgatgttaagagatggagaccagcctgactaacatgttgaaaccccatctctactaaaaatacaaaaattagccggacacggtggcatgcacctgtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaat i papHam1.scaffold36733 C 0 I 178 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=7026.000000 s hg19.chrUn_gl000223 147548 54 + 180455 attgtgccactgcactccagcctgggcgacaagagcaaaactccatctcTCACA s ponAbe2.chr12 315771 30 - 136387465 attgtgccactgcactctagcatgggcgac------------------------ i ponAbe2.chr12 C 0 I 1041 s papHam1.scaffold36733 5041 54 - 12949 attgcgccattgcactccagcctgggcaacaagagcaaaaccccatttcTCACA i papHam1.scaffold36733 I 178 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 290229 21195 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=19416.000000 s hg19.chrUn_gl000223 147602 153 + 180455 GGCTCCAAATTTACTAATATAGAATTGAGCAAAATATTATTTCATATATACTTTAATTTGGTCTTTATGGCCATTTCAATTTTTTAAATTGCCAATTGTGAGTGTGTTTCCTGTTTCTCCCCATTTTTATTTTAAAAAACTAATATGCTTTTA s papHam1.scaffold36733 5095 147 - 12949 GGCTCCAAATTTACTAATATAGAATTGAGCTAAATATTATTTCACAAATACTTGAATTTGGTCTTTATGGCCATTCCAATTTTTTAAATTGCCAATT----GTGTGTTTCCTGTTTTTCCCCATTTTTATGT--AAAAATTAATATGCTTTTA i papHam1.scaffold36733 C 0 I 868 s cavPor3.scaffold_248 311424 140 + 667635 GGTTTCAAATTTGTTAGCAAGGAATTGTGCAAATCATTACCTCACAAATAGTTT------GTATTTATGGCTATTTTTATCCT---ACTTATCAACT----GTGTGTACTTTTGCTGTCTCAGTTTTTGATAAAAAAATTTTGTATGCTTTTG i cavPor3.scaffold_248 I 21195 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e ponAbe2.chr12 315801 1041 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=97.000000 s hg19.chrUn_gl000223 147755 57 + 180455 CAGtttttct-------ttttctttttt---tttttttttagacagaatctcactctgtctcccagg s cavPor3.scaffold_248 311564 67 + 667635 GTTTTTTACTATAGGACTTATCATGTTCAGATTTTTCCTTTGATTTAATTTCTGCTTTTCTATCAAG i cavPor3.scaffold_248 C 0 I 194 e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e ponAbe2.chr12 315801 1041 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 147812 424 + 180455 gtggagtgcagtggtgagatctcagctcactgcaacctctgcctcctgggttcaagcaattctcatgcctccacctcctgagtaggtgggattacaggtatgagccattacaggcatgagccaccacacctggctaatttttatatttttagtacagatggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatccgcccgccttagcctcccaaagtgctgggattacaggtgtgagccaccgcgcctggccTGGCCAAAAAATAtttttaagagaaggtgtctccctctgtggcccaggctggagtgcagtgttgccatcatagctcactgcagcctcaacctcccaggctcaggcaatcctcctgcctcagcctccagtagttgggactacagggacaagccac e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e ponAbe2.chr12 315801 1041 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3231972 5806 + 42029645 I a score=1337.000000 s hg19.chrUn_gl000223 148236 42 + 180455 TGCTTTATATATCCATAAATATATTTTATTTCCCTGTAATGT s canFam2.chr26 3237778 42 + 42029645 TTCCTCCTGTTTCCATAATTTCATTCTTTCTCCCTAAATTGT i canFam2.chr26 I 5806 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e ponAbe2.chr12 315801 1041 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I a score=0.000000 s hg19.chrUn_gl000223 148278 314 + 180455 CCTCATCTCAtttatttttccttttttttttcttgagatgaggtctcactctgttgccaggctagagtgcagcggcatgatggctcaccgcaacccccgcctcccgagttcaagtgattctcctgcctcagcctcccgagtagatgggattacaggcgcccaccaccacgcccagctaatgttctgtatttttagtagagacggggtttcaccgtgttggccaggatggtctcaatctcctgacctggtgatccgcccacctcagcctcccaaagtgctgggattacagccgtgagccaccgcgcccaaccCTA e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e ponAbe2.chr12 315801 1041 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3237820 0 + 42029645 C a score=2707.000000 s hg19.chrUn_gl000223 148592 50 + 180455 TCATCTATTTTCATTCCTTTTGTCAATACTGCTGGATTGGATGTACTAAA s canFam2.chr26 3237820 45 + 42029645 TCATTTATTTTCACTTCTTTTGTCAGTGCTG-----TTGGCTGTGCTAAA i canFam2.chr26 C 0 I 24 e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e ponAbe2.chr12 315801 1041 - 136387465 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I a score=19450.000000 s hg19.chrUn_gl000223 148642 226 + 180455 TGTAAGGTCCTCTGAGCTGGCCGCACC-ATGGTCAAGccatcgtgacattcccccacccttgtgataatgtactttgtaatattcccggtccttgtgaatgtactttgtaacattcctctccgcccttgtgacaatacaccctccccgcccttgtgaatgtactttgtaacatcctcccctgcccgcaaaaaattgctgctgaggccgggcgcggtggctcacgccc s ponAbe2.chr12 316842 227 - 136387465 TGTAAGGTCCTCTGAGCTGGCCGCACCTATAAAAAAGccatcgtgacattcccccacccttgtgataatgtattttgaaatattcccggtcctcgtgaatgtactttgtaacattcctttccgcccttgtgacaatacaccctccccgcccttgtgaatgtactttgtaacatcctcccctgcccgcaaaaaattgctgctgaggccgagcgccgtggctcacgcct i ponAbe2.chr12 I 1041 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 272738 0 - 135371336 C e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3237865 24 + 42029645 I a score=114965.000000 s hg19.chrUn_gl000223 148868 443 + 180455 gtaatcccagcactttgggaggccgaggagggcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactcaggaggatgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctcggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaattgctgctgactccaccgcctatcctatcccaaagctataagaaccaatgacaagcccaccaccctccgctgactcctttctcagactcagcccacttgcacccaagtgaataaacaggcgtgttgctcacacttagcctgctcaggtggtctcctatacgg s ponAbe2.chr12 317069 434 - 136387465 gtaatcccagcactttgggaggccgaggagggcggatcacgaagtcgggagatcaagaccatgccggctaacacagtgaaactccgtttctactaaaaatacaaaaaaattagatgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctgaggcacgagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatc-cgccactgcactccagcctgggcgacagagtgagactctatctcaaaaaaaaaaaaaaa--------ttgctgctgactccaccgcctatcctatcccaaacctataagaaccaatgataagcccaccaccctccgctgactcctttctcagactcagcccacttgcacccaagtgaataaacagccttgttgttcacacttagcctgctcaggtggtctcttatacgg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 272738 442 - 135371336 gtaatcccagcactttgggaggccgaggagggcggatcacgaagtcgggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgggccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa-ttgccgctgactccaccgcctatcctatcccaaacctataagaatcaatgacaagcccaccaccctccgctgactcctttctcagactcagcccacttgcacccaagtgaataaacaggcttgttgctcacacttagcctgctcaggtggtctcctatacgg i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e papHam1.scaffold36733 5242 868 - 12949 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 267890 5943 - 134511895 M e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3237865 24 + 42029645 I a score=51881.000000 s hg19.chrUn_gl000223 149311 59 + 180455 acgcacgtaacaCTAACATTTACCGATATTACTTACAGCTACGATGAAAAATGGAAAAG s panTro2.chr12 273180 59 - 135371336 acgcacgtaacaCTAACATTTACCGATATTACTTACAGCTACGATGaaaaatggaaaag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317503 59 - 136387465 acacgcgtaacaCTAACATTTACCGATATTACTTACAGCTATGATGaaaaatggaaaag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 273873 59 - 134511895 acGCGCGTAACACTAAAATTTACCTATATTACTTACAGCTGTGATGTAAAATGGaaaag i rheMac2.chr11 M 5943 C 0 s papHam1.scaffold36733 6110 59 - 12949 ACGCGCGTAACACTAAAATTTACCTATATTACTTACAGCTGTGATGTAAAATGGAAAAG i papHam1.scaffold36733 I 868 C 0 s canFam2.chr26 3237889 34 + 42029645 -------------------------AAATGACTTCGATCTAACATGAAAAATGGAAACG i canFam2.chr26 I 24 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I a score=134035.000000 s hg19.chrUn_gl000223 149370 155 + 180455 CAgccggacgcagtgactcatgcctgtaattccagcattttgggaggctggggcaggaggatcatttgaacccaggagtc-ggagaccagcctgaggctgcaatgagcgttcatggcaccactgcactccccactgggtgacagagcg-agaccctg s papHam1.scaffold36733 6169 157 - 12949 AAgccggacgcagtgactcatgcctgtaattccagcattttaggaggctggggcaggaggatcatttgaacccaggagttgggaaaccagcctgaggctgcaatgagtggtgatggcaccactgcactccccactgggtgacagagcgaaaaccctg i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 273932 156 - 134511895 aagccggacgcagtgactcatgcctgtaattccagcattttaggaggctggggcaggaggatcatttgaacccaggagttgggaaaccagcctgaggctgcaatgagtggtgatggcaccactgcactccccactgggtgacagagcg-aaaccctg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 317562 155 - 136387465 aagccggacgcagtgactcatgccagtaattccagcattttgggaggctggggcaggaggatcatttgaacccaggagtc-ggagaccagcctggggctgcaatgagcggtgacggcaccactgcactccgcactgggtgacagagcg-agaccctg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 273239 155 - 135371336 cagccggacgcagtgactcatgcctgtaattccagcattttgggaggctgggacaggaggatcatttgaacccaggagtc-ggagaccagcctgaggctgcaatgagcgttcatggcaccactgcactccccactgggtgacagagcg-agaccctg i panTro2.chr12 C 0 C 0 e oryCun2.chrUn0106 712936 13124 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3237923 0 + 42029645 C a score=11650.000000 s hg19.chrUn_gl000223 149525 22 + 180455 cctccaaaaaaaaaaaaaa-------------aaa s oryCun2.chrUn0106 726060 35 + 1032594 CTTTCaaataaataaataaatttaaaaatctttaa i oryCun2.chrUn0106 I 13124 C 0 s papHam1.scaffold36733 6326 23 - 12949 cctccaaaaacaaacaaaca------------aaa i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274088 23 - 134511895 cctccaaaaacaaacaaaca------------aaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 317717 20 - 136387465 cctccaaaaaaaaaaaa---------------caa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 273394 23 - 135371336 cctccaaaaaaaaaaaaaac------------aaa i panTro2.chr12 C 0 C 0 e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I e equCab2.chr8 64182969 4342 - 94057673 I e canFam2.chr26 3237923 0 + 42029645 C a score=70667.000000 s hg19.chrUn_gl000223 149547 73 + 180455 aaACAAGGAAAAGATGCAGACGCTTCCTCCTGG-AGGCGC-------CTTTAGGTTCTCT-CA--CAGACATGTTGGGCCAGCA s panTro2.chr12 273417 73 - 135371336 aaacaaggaaaAGATGCAGATGCTTCCTCCTGG-AGGCGC-------CTTTAGGTTCTCT-CA--CAGACATGGTGGGCCAGCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317737 73 - 136387465 caacaaggaaaagaTGCAGACGCTTCCTCCTGG-AGGCGC-------CTTTAGGTTCTCT-CA--CAGACATGTGGGGCCAGCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274111 73 - 134511895 aaacaaggaaaAGATGCAGACGCGTCCTCCTGG-AGGCGC-------CTTTAGGTTCTCT-CA--CAGACATGTTGGGCCAGCA i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6349 73 - 12949 aAACAAGGAAAAGATGCAGAGGCGTCCTCCTGG-AGGCGC-------CTTTAGGTTCTCT-CA--CAGACATGTTGGGCCAGCA i papHam1.scaffold36733 C 0 C 0 s oryCun2.chrUn0106 726095 62 + 1032594 aaatttaGAAAAGATGCAGAATCTTCCCCCAGGCAGTTGCTCATCTACTTCCGTTTCTTT-TA--------------------- i oryCun2.chrUn0106 C 0 I 38 s canFam2.chr26 3237923 58 + 42029645 -------------ATACAGAAGCCTCCTCCCGG-CGACCC-------ACTTA-GGACGCCGCACACTCACATTTTGG----GGA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64187311 71 - 94057673 AAAAATGGAAAGGATACATAAGCTTCCTCCTGG-TGACAT-------ATCTATAGGCGCT-CAAAAACACACGGCGG----GCA i equCab2.chr8 I 4342 C 0 e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I a score=16391.000000 s hg19.chrUn_gl000223 149620 34 + 180455 GTGCTGGCTCCATCCTAGATTTCTT---CCA-----GTCCTC s papHam1.scaffold36733 6422 34 - 12949 CTGCTGGCTCCATCCTAGATTTCTT---CCA-----GTCCTC i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274184 34 - 134511895 CTGCTGGCTCCATCCTAGATTTCTT---CCA-----GTCCTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 317810 34 - 136387465 GTGCTGGCTCCATCCTAGATTTCTC---CCA-----GTCCTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 273490 34 - 135371336 GTGCTTGCTCCATCCTAGATTTCTT---CCA-----GTCCTC i panTro2.chr12 C 0 C 0 s canFam2.chr26 3237981 20 + 42029645 GCGC-----GTTCCTG----CTCTG-----------GGAT-- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64187382 35 - 94057673 GCGCCGGCTGCACCTAAGATCTCTGAACCAA-----GCAC-- i equCab2.chr8 C 0 C 0 s ornAna1.Contig16226 10778 37 + 17587 GTGTTTTCTTCACCT--GACTCCTG---CCAATGGGGACATC i ornAna1.Contig16226 N 0 C 0 e oryCun2.chrUn0106 726157 38 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I e bosTau4.chr17 30017873 2698 - 76506943 I a score=19404.000000 s hg19.chrUn_gl000223 149654 30 + 180455 -CCCAGTTAGCCGCCAAGGG-GCTTTTCCAAC s bosTau4.chr17 30020571 23 - 76506943 ------TCAGCCAC--AAAGCGTTTT-GCAAC i bosTau4.chr17 I 2698 C 0 s equCab2.chr8 64187417 29 - 94057673 -CCCAGGCAGCCAC--ACAGCGCCTTTATAAC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3238001 25 + 42029645 -GCCAAGCAGCCG---ACAG-GCTTT--CCAC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_53443 221 24 - 947 -CCCTGGCAGCTACCAAGGG-GCTTC------ i myoLuc1.scaffold_53443 N 0 C 0 s panTro2.chr12 273524 30 - 135371336 -CCCAGTTAGCCGCCAAGGG-GCTTTTCCAAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317844 30 - 136387465 -CCCAGTTAGCCGCCAAGGG-GCTTTTCCAAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274218 30 - 134511895 -CCCAGTTACCCGCCAAGCG-GCTTCTCCAAC i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6456 30 - 12949 -CCCAGTTACCCGCCAAGCG-GCTTCTCCAAC i papHam1.scaffold36733 C 0 C 0 s choHof1.scaffold_130871 3677 23 - 5136 --------AACAGCAGAAAG-GTTTTTTCAGT i choHof1.scaffold_130871 N 0 C 0 s ornAna1.Contig16226 10815 30 + 17587 ACTTGTTCGGCCGC-GAGGG-GCTCATGCGCC i ornAna1.Contig16226 C 0 C 0 e oryCun2.chrUn0106 726157 38 + 1032594 I e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I a score=-13387.000000 s hg19.chrUn_gl000223 149684 34 + 180455 CGGAAACCTCCAATC----CGCGA--------CCCCG---GCGGGTGCA s panTro2.chr12 273554 34 - 135371336 CGGAAACCTCCAATC----CGCGA--------CCCCG---GCGGGTGCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317874 34 - 136387465 CGGAAACCTCCAATC----CGCGA--------CCCCG---GCGGGTGCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274248 33 - 134511895 CGGAAACGTCCTAG-----GGCGA--------CCCCG---GCGGGTGCA i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6486 33 - 12949 CGGAAACGTCCTAG-----GGCGA--------CCCCG---GCGGGTGCA i papHam1.scaffold36733 C 0 C 0 s oryCun2.chrUn0106 726195 34 + 1032594 CGAACACCCCAAAACTGTTAGCCA--------CAGTG---CCGTG---- i oryCun2.chrUn0106 I 38 C 0 s myoLuc1.scaffold_53443 245 31 - 947 ---AAACCCCCAACC----TGTCAA-------TCCTG---CAAGCCG-G i myoLuc1.scaffold_53443 C 0 C 0 s canFam2.chr26 3238026 35 + 42029645 TGGGAACCTCAGCCC----TGCCAA-------TCGGA---AAAGGCGCG i canFam2.chr26 C 0 C 0 s equCab2.chr8 64187446 36 - 94057673 CGGAAACCTCAAAAC----TGTCAA-------TCTCAC--GGAGGCGCG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30020594 34 - 76506943 AGGAAAGAGCACACC----TGTCC--------CTCAG---GGGGGCGCG i bosTau4.chr17 C 0 C 0 s turTru1.scaffold_109773 116209 14 + 343976 --------------------------------CCCGG---CCAGATGCG i turTru1.scaffold_109773 N 0 C 0 s choHof1.scaffold_130871 3700 36 - 5136 -CAAAGCCATCAGCC----AATCA--------CGCGGCGTGGAGACGCG i choHof1.scaffold_130871 C 0 C 0 s ornAna1.Contig16226 10845 40 + 17587 --GAGGCCTCCTGGG----GGCCTGTCTCCCCTCGCG---ATAGGGGCC i ornAna1.Contig16226 C 0 C 0 e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 311631 194 + 667635 I a score=139716.000000 s hg19.chrUn_gl000223 149718 29 + 180455 ---CCGCCGAGCCCCCCGGGAAGTGTAG--------------------------------TTCC s panTro2.chr12 273588 29 - 135371336 ---CCGCCGAGCCCCCCGGGAAGTGTAG--------------------------------TTCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317908 29 - 136387465 ---CCGCCGAGCCCTCCGGGAAGTGTAG--------------------------------TTCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274281 29 - 134511895 ---CCGCGGAGCCCCTCGGGAAGTGTAG--------------------------------TTCC i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6519 29 - 12949 ---CCGCGGAGCCCCTCGGGAAGTGTAG--------------------------------TTCC i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 311825 30 + 667635 ---CCGCAGGGCCTTCTGGGAAGCGTGGT-------------------------------TTCC i cavPor3.scaffold_248 I 194 C 0 s oryCun2.chrUn0106 726229 61 + 1032594 ---CCCCAGAGCCCTCTGGGAAGCGTAGTTCCGGAGCGAGGGGGACCCTGGGAAGCGTAGTTCC i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_109773 116223 29 + 343976 ---CCGCGGAGCCCTCTGTGAAATGTAG--------------------------------TTCT i turTru1.scaffold_109773 C 0 C 0 s bosTau4.chr17 30020628 29 - 76506943 ---CCGCAAGCCCCTCTGGGAAATGTAG--------------------------------TTCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64187482 28 - 94057673 ---CCGCAGAGCCTTTTGGGAG-TGTAG--------------------------------TCCC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3238061 29 + 42029645 ---CCGCAGAGCCCTCTGGGAGATGTAG--------------------------------TTCC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_53443 276 29 - 947 ---TCGCAGAGCCCTCTGGGAAGTGTAG--------------------------------TTCT i myoLuc1.scaffold_53443 C 0 C 0 s choHof1.scaffold_130871 3736 29 - 5136 ---CCTCAGGGGCCTATGGGAAATGTAG--------------------------------TTCT i choHof1.scaffold_130871 C 0 C 0 s ornAna1.Contig16226 10885 32 + 17587 CCGCCGCGAGGGATGATGGGAAATGTAG--------------------------------TTCC i ornAna1.Contig16226 C 0 C 0 e loxAfr3.scaffold_113 132153 9764 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=215532.000000 s hg19.chrUn_gl000223 149747 37 + 180455 -AGCGCGAGCGGGACGCTGGGAAATGTAGT--TCTGCGCG s panTro2.chr12 273617 37 - 135371336 -AGCGCGAGCGGGACGCTGGGAAATGTAGT--TCTGCGCG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317937 37 - 136387465 -AGCGCGAGCGGGACGCTGGGAAATGTAGT--TTCGCGCG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274310 39 - 134511895 -AGCGCGAGCGGCACTCTGGTAAATGTAGTTCTCTGCGCG i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6548 39 - 12949 -AGCGCGAGCGGCACTCTGGTAAATGTAGTTCTCTGCGCG i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 311855 37 + 667635 -AGCACCAGCAGCACTCTGGGAAATGTAGT--TTCCCGTG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 726290 37 + 1032594 -GGAGCGAGGGGGGCCCTGGGAAGTGTAGT--TCTATAAA i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_109773 116252 37 + 343976 -AGAGCGAGCAGCGCTATGGGAAATGTAGT--TCTGAGCG i turTru1.scaffold_109773 C 0 C 0 s bosTau4.chr17 30020657 37 - 76506943 -AAAGCGAGTGGGACTCTGGGAAATGTAGT--TCTGCGTG i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64187510 36 - 94057673 --GAGCGAGCGGGGCTCTGGGAGATGTAGT--TCTGGGCG i equCab2.chr8 C 0 I 36043 s canFam2.chr26 3238090 37 + 42029645 -GGGGCGAGCGGCACTCTGGGGGATGTAGT--TCTGCACG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_53443 305 37 - 947 -AAAGCGAGCGGAATTCCGGGAAATGTAGT--TCTGCGCA i myoLuc1.scaffold_53443 C 0 C 0 s loxAfr3.scaffold_113 141917 37 - 3408981 -AGGGCGCGCAGGACCCTGGGAAATGTAGT--TCTGCGCG i loxAfr3.scaffold_113 I 9764 C 0 s choHof1.scaffold_130871 3765 37 - 5136 -GGAGGGAGCGGGACTCTGGGAAGTGTAGT--TCTGCGCG i choHof1.scaffold_130871 C 0 C 0 s ornAna1.Contig16226 10917 37 + 17587 CAGCG-GGGGGGGATGATGGGAAATGTAGT--TCCGAGCG i ornAna1.Contig16226 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-187266.000000 s hg19.chrUn_gl000223 149784 249 + 180455 TTCACGTCCCCGATCGG---GCCGTGTCCGCCGCG-GC--CCTGCGAGGTC-----C---GAGGGGTAAGGGAGCGTGCAG-CG-GGGGCGGGAC--CACG--------------AGGCGGCGGGGCTG------------GGGGC--------GGCCTCTGTGTCT---GCGCCGGGGATCGCGGTGACCCCGCTGCGGACCGGCT---CGCGGTGA-------------CC----CCAGCGCGAACGAG--CTGG---CTGCCGG--CTGGGGC------GAGAAAGGCCTGCGGA-----------------------CCGGC---------CTG--GGCGC----------ATGCG----CGGAAGGCG-----GGCC-------TCAggcgg-- s panTro2.chr12 273654 249 - 135371336 TTCACTTCCCTGATCGG---GCAGTGTCCGCCGCG-GC--ACTGCGAGGTC-----C---GAGGGGTAAGGGAGCGTGCAG-CG-GGGGCGGGAC--GACG--------------AGGCGGCGGGGCTG------------GGGGC--------GGCCTCTGTGTCT---GCGCCGGGGATCGCGGTGACCCCGCTGCGGACCGGCT---CGCGGTGA-------------CC----CCAGCGCGCACGAA--CTGG---CTGCCGG--CCGGGGC------GAGAAAGGCCTGCGGA-----------------------CCGGC---------CTG--GGCGC----------ATGCG----CGGAAGGCG-----GGCC-------TCAggcgg-- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 317974 249 - 136387465 TTCACTTCCCCGGTCGG---GTCGTGTCCGCCTCG-GC--ACTGCGAGGTC-----C---GAGGGGTAAGGGAGCGTGCAG-CG-GGGGCGGGAC--GACA--------------AGGCGGCGGGGCTG------------GGGGT--------GGCCTCTGTGTCT---GCGCCGGGGGTCGGGGTGACTCCGCTGTGGACCGGCT---CGCGGTGA-------------CC----CCAGCACGCACGAG--CTGG---CTGCCGG--CCGGGGC------GAGAAAGGCCTGCGGA-----------------------CCGGC---------CTG--GGCGC----------ATGCG----CGGAAGGCG-----GGCC-------TCAggcgg-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274349 249 - 134511895 TTCACTTCCGCGGTGGG---GCCGTGTCCACCACT-GC--ACTGCGAGGTC-----C---GAGGGGTAAGGGAGTGTGCAG-CG-GGGGCGGGAC--GACT--------------AGGCGGCGGGGCTG------------GAGGC--------AGGCTCTGTGTCT---GCGCCGGGGGTCGCGGTGACCCCGCTGCGGACCGGCT---AGCGGTGA-------------CC----CCAGCGCGCCGGAG--CTGG---CTGCCGG--CCGGGGC------CAGAAAGGCCTGCGGG-----------------------GCGGC---------CTG--GGCGC----------ATGCG----CGGACCGCG-----GGCC-------TCgggcgg-- i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6587 249 - 12949 TTCACTTCCGCGGTGGG---GCCGTGTCCACCACG-GC--ACTGCGAGGTC-----C---GAGGGGTAAGGGAGTGTGCAG-CG-GGGGCGGGAC--GACT--------------AGGCGGCGGGGCTG------------GAGGC--------GGGCTCTGTGTCT---GCGCCGGGGGTCGCGGTGACCCCGCTGCGGACCGGCT---AGCGGTGA-------------CC----CCAGCGCGCCAGAG--CTGG---CTGCCGG--CCGGGGC------CAGAAAGGCCTGCTGG-----------------------GCGGC---------CTG--GGCGC----------ATGCG----CGGACGGCG-----GGCC-------TCgggcgg-- i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 311892 211 + 667635 GTCACTTCCGCTGTTGG---GCCGTCTCCGCCTAT-GC--TCGGAGAAATCTACCGT---GGAGAATAAGCTGGAGGGGAAGCA-GAGGGTGGCCTTGGTG--------------TTCTCCCGG---GT------------GTGGCGGAGACCTGCGATCCGGGTGA---ATACGGGGTGGGGTGGGGGAGGCA-------------------GGGGA-------------CC----GCGGCGCATGCGCG----------CCCGGG--GCGCGGT------GAGG-------GC---------------------------------------------GAGGC----------GAGGG----C-------------GGGT-------CCGA------ i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 726327 213 + 1032594 GAGGCGTCTGCAGTTGT---GCCGCGGACACCTCA-GC--ACCAAGGGGTC-----C---GAGGGGTAAGGGTGTGTGGGGCTA-GGGGCGCGGCTTGGCT--------------TGGCTGCGGGCTGC------------GTGAC--------GCACTTTGTGTCC---GCCCCAGGTCGCGT-----------------------------GCGGA-------------CC----CCGGCGCGCCCACAAATCGG---CTCCGAG--GCCGGGC------GACGCGGCACTGC---------------------------------------------GGCGC----------ATGCG----CCGACTCCA-----GGCC-------TCGG------ i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_109773 116289 222 + 343976 GACACTTGCGCGGCCCT---GCGGCGTCAGCGTCGCGC--CCCGGGG-------------GAGAGGTCAGG-TGTGGGGGG-CGGCGTCCG------------------------CGTTTGCGG-----GGGTCCCGCTGCGGGCC--------CGCAG-CATAGCC---GTGC------------------------GGCCGAG-----TGAGGCG---------------G----CCAGTGAGGGT---------------CGGAT-CCGGGGGTTCTTGGGGTGAGTGGCTGAGG---------ACTGCGGAGACTGGGTGAT---------TCG--GGCCC----------GCAGG----TCGCGGGC------------C----TGGAGCGT-- i turTru1.scaffold_109773 C 0 I 4 s bosTau4.chr17 30020694 290 - 76506943 GACACTGCCGAGGCCCA---GCCGCGTCCGCCTCG-GT--TCTGTAGA--C-----C--AGAGGGGTAAGGTTGTGGgggg-ctggggctggggc--ggggacggggctgtgggctgCTTGTGGCCTCTGCGTCCGACT--GGGGC--------CGTGT-GATGACCCCGGCGC------------------------GGACCGGCC---TGGGGCGA-------------CG----CCGGCGTGTGTACGAACCAG---CTCCGGAG-CCGGGAACT----GGGGGAGGCTCGGAAGGATTTTCCTGCTGCGCAGGCT--TCGAT---------TCC--GGTGCAGGTGCGGGGGTACG----TTGCgggtg-----aggctgt----gggggagg-- i bosTau4.chr17 C 0 I 6 s equCab2.chr8 64223589 156 - 94057673 GACACCTCCGCGGCGGG---ACCGCGTCAATCTCG-GC---CTGCGGG--C-----C---GCCGGGTAAGGGTGTGCGGGG-CG---------------------------------------------------------GGGGC--------AGCCTCCGTGTCC---GCCAG-----------------------GGTCC-------CGCGGTGT-------------CC----CCGGCGC------------G---CCCAAG---CCAGTCC------GAGGA--------------------------------------------------A--GGCCT----------GCGGG----CGGCTGG------------------TGGGGCGG-- i equCab2.chr8 I 36043 T 35448 s canFam2.chr26 3238127 240 + 42029645 CGCACTTCCGCGGTCGG----CCGCGTGAGCCCCG-GC--GCGGTGGG--C-----CTGAGCTGG---AGGGTGTGTgcgg-cggggggcggggc--ggcg--------------aggctgcggggccgggg--cggcc--ggggc--------ggccTAGGTGTCG---GTGCG-----------------------GGCCC-------CGCGGTGA-------------CC----TCGGCGCACGAGCGAACTGG---CTCCGGAGCCCGGTGC------GAGGATGATCCGGAGT---------G-------------AAGGA---------TCG--GGCGT----------GGGAG----CGACTGGGG-----GCGCGAAGGAAGGGGGCGG-- i canFam2.chr26 C 0 I 6 s myoLuc1.scaffold_53443 342 217 - 947 GACACTTCCGCCTTCGG---GAGGTGTCAGGCG-G-GT--GCTGCGGC--C-----T---CCAGGGGGAGGCTTTGTGGCG-CG--GAGACGGAC--CGGG--------------AGGTTGCGGCCT--------------GGGGC--------GGCCCCCGTGACC---GCCC------------------------AGTCC-------CTCGGCCA-------------CC----CTGGCGCGCGCACGAACG-G---CCCCGGAG-CCGGTGC------TGGGCAGGCCCGGAGA---------AC------------GACCC---------TGC--GGCGC----------GGCGGTTCCCGTCCGG------------------GTGGGTGG-- i myoLuc1.scaffold_53443 C 0 C 0 s loxAfr3.scaffold_113 141954 176 - 3408981 TACACTTCCGCGGTCGG---GCAGCGTCCCCCTCG-GC--GCTGCGGGGCC---------GACGGT--------------------------GAC--T------------------------------------------------------------TCTGCGTCC---GCAC-GAGTCCCGCGGTGACCCCGGCGA--------T---CGCCCCGA-------------CCCTCACCAGGGCCTG-------------------G--TCC----------AAGGGATGCCCGCGAG---------A-------------GTTGC---------CTCGTAGTGC----------ACGCG----CCGTCTCCG-----GG---------CCTGGTAG-- i loxAfr3.scaffold_113 C 0 I 22 s choHof1.scaffold_130871 3802 251 - 5136 TACACTTTTGCAGTCGG---GCCGCGTCCTCCTCG-GC--GCTGCGGGCCT-----G---GACGGTTAAGGGTGAGCGCGGGCG-GGGCCGAGAC--TGCG--------------AGGCTGCGGGGCCG------------GGGGC--------AG-CTCTGCTTCC---GCCC-GGGATCCGAAGAGAACCCGGTGAGGCCCGGCT---CGCCGTGA-------------CC----CCAGGGCGCGCACGTACCGA---CTCGGTG--CCCTGAG------GAGAAAGGCCCGCGAA---------G-------------GCAGC---------GCGGCGGCGC----------ATGCG----CGCGTTCCG-----GA---------CTAggcgg-- i choHof1.scaffold_130871 C 0 I 21 s ornAna1.Contig16226 10954 254 + 17587 ---------GGGGACGGGGAGGGGCGCCGGCCAGG-GCCGACCGCGAGGGG-----T---GATGGGAAATGTAGTTCCCAG-CG-G-----------GGGG--------------AGGGGGCGACGTCG------------GCCAG--------GGCCGCTCTGGCT---GC--------------------CGCTGGGGACCGGCCGCGAGGGGTGATGGGAAATGTAGTTT----CCAGCGGGGGGGGCTGATGGGAAATGTAGT--TCCCAgc------gggggggccccgcccg---------g-------------gcTGCCGCTTGCGGCCG--GCCGC----------GAGGG----CTGATGGGAAATGTAGTT-------CCCAGCGGGG i ornAna1.Contig16226 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-50186.000000 s hg19.chrUn_gl000223 150033 36 + 180455 gggctc-t----gg-gggcgcg-------------cggggg-----tggga--------ggc----------agaggg s panTro2.chr12 273903 36 - 135371336 gggccc-t----gg-gggcgtg-------------cggggg-----tggga--------ggc----------agaggg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 318223 36 - 136387465 gagccc-t----gg-gggcgcg-------------cggggg-----tggga--------ggc----------agaggg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274598 35 - 134511895 g-gccc-t----gg-gggcgcg-------------cggggg-----tggga--------ggc----------agcggg i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 6836 35 - 12949 g-gccc-t----gg-gggcgcg-------------cggggg-----tggga--------ggc----------agcggg i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 312103 43 + 667635 --GTCC-T----GGAATGTGGG-------------CCGGGG-----AGGAGTTTGGGGTGGC----------CGTGGC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 726540 39 + 1032594 --GCTC-C----GGCGAGTGGG-------------CGGGAC-----CGGGTTGTG----GGC----------CTTGTC i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_109773 116515 33 + 343976 --GCTG-CGTCGGG-CGCCGTGC------------GGGCTT-----GGGGA--------GGC---------------- i turTru1.scaffold_109773 I 4 C 0 s bosTau4.chr17 30020990 63 - 76506943 gggcgg-cataggg-ggcggggcggcgcggggtaagggcta-----gaggt--------ggcagagcagagcggagcg i bosTau4.chr17 I 6 C 0 s equCab2.chr8 64188297 41 - 94057673 GGGACT-T-----G-GGAGGGG-------------ACGAGT-----GGTGA--------AGC----CAGTGGAGGGAA i equCab2.chr8 T 35448 C 0 s canFam2.chr26 3238373 40 + 42029645 GGGCCG-C-----C-TGCTGTG-------------GC-CGT-----GATGA--------GGC----CGCTGGGGGGGG i canFam2.chr26 I 6 C 0 s myoLuc1.scaffold_53443 559 42 - 947 GGACCG-C----GG-GGCTGCG-------------GGAAGG-----GAGGG--------AGC----GGGTGCGGCGCG i myoLuc1.scaffold_53443 C 0 C 0 s loxAfr3.scaffold_113 142152 36 - 3408981 GGGACC-C----GG-GGCTGCG-------------AGATGC-----GGGGC--------GGC----------GGGCGA i loxAfr3.scaffold_113 I 22 C 0 s choHof1.scaffold_130871 4074 42 - 5136 GGGCCTGC----GC-GCGTGCG-------------CAGTGTCTGCGGGGAT--------GGC----------CGGCGA i choHof1.scaffold_130871 I 21 C 0 s ornAna1.Contig16226 11208 36 + 17587 GGGCTG-A----TG-GGAAATG-------------TAGTTC-----CGAGC--------GGT----------GGGGTG i ornAna1.Contig16226 C 0 N 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-88436.000000 s hg19.chrUn_gl000223 150069 39 + 180455 tggggt-----------------------g------gggg-ctgta---gggcggg----cggcgg-------------cgg-----ggCGCTG s choHof1.scaffold_130871 4116 32 - 5136 GTGGGC-----------------------G------CGGG-CGCCA---GGAGGGGCTTCCTGTG----------------------------- i choHof1.scaffold_130871 C 0 C 0 s loxAfr3.scaffold_113 142188 30 - 3408981 GTGGGC-----------------------G------GGGC-CGGGC---CGTGGGG--TTCTGTG----------------------------- i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_53443 601 39 - 947 TTAGGG-----------------------G---GCCGGGT-CTGTA---GGAGTGG----GT----------------GCGG-----GGCGGCG i myoLuc1.scaffold_53443 C 0 C 0 s canFam2.chr26 3238413 38 + 42029645 GGTCGT-----------------------G-TCGCTAGGG-CCACC---GGAGGG-----------------------CCAA-----GATGCTG i canFam2.chr26 C 0 I 302 s equCab2.chr8 64188338 37 - 94057673 TTAATT-----------------------GATTGATGGGG-CCCTC---TGGGG-------------------------TGA-----ATCGTTG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30021053 71 - 76506943 ggagggagcgggatgaggGGCAAGGTTTGGAGGACTGGGGTCTGTA---GGGTTGG----GTGTAA---------GTGTCGG-------TGGTG i bosTau4.chr17 C 0 I 46 s turTru1.scaffold_109773 116548 43 + 343976 -----------------------------GAGTACCGGGG-CTGCG---GGGGTGG----GTGATT---------GGGACGA-----GCTGGCG i turTru1.scaffold_109773 C 0 I 20 s oryCun2.chrUn0106 726579 47 + 1032594 C----------------------------G------GGCC-CTGCG---GGGGTGA----CGGTGGGCGTCCGGAGGCCCAG-----GGGACTG i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 312146 58 + 667635 CAAG-------------------------G------AGGA-CTGCGAGTGGGTCGA----TGTAGGAACTTTGGAGAGTCAGATCGTGGAGCTT i cavPor3.scaffold_248 C 0 C 0 s papHam1.scaffold36733 6871 39 - 12949 cggggt-----------------------g------gggg-ctgta---gggcggg----cgccgg-------------cgg-----ggCGCTG i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274633 39 - 134511895 cggggt-----------------------g------gggg-ctgta---gggcggg----cggcgg-------------cgg-----ggCGCTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318259 42 - 136387465 tggggt-----------------------g------gggg-ctgta---gggcggg----cggcgg----------cgacgg-----ggCGCTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 273939 39 - 135371336 tggggg-----------------------g------gggg-ctgta---gggcggg----cggcgg-------------cgg-----ggCGCTG i panTro2.chr12 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-198513.000000 s hg19.chrUn_gl000223 150108 108 + 180455 A------------ATGTGGGTGTC-----GGGGGAG---------------------------AT--------TTGGGGTCA-GCTGGGCGAT--------TCA-CTGG------GGGCCTATGGAGGT---CGCTGTAGACTTGGGGTGCA-----GCACGGGCGGGGCAAG-----------------------GGGAC---------------------GCGAGG s choHof1.scaffold_130871 4148 159 - 5136 ------------ATGGCGGCTGAG-----GA-GGGGCGGTGGGGATGCCTGTGGAGCGGATTCAC--------CCCGGGACA-GTTGAGGGTC------GGTGATCGGA------GTGTCT---GAACATCGCCATCCGGGGCTCGGGAGGGAT--GGCGGTTGTGGGGCCAG-----------------------AGGAGGGAAGGAATTGTGTGACTGGGCTGA-- i choHof1.scaffold_130871 C 0 C 0 s loxAfr3.scaffold_113 142218 148 - 3408981 ------------GGAGTGGGTGAC-----GAGGGGGCTGTGGAGGTGGCTGTGAGACTGATTAAC--------CTGGGGACA-CCTGAGGGAC------AGTTATTTGA------GTGTCTGTAGAAATTAGTAATTTGGGGCTTGGCAGGGCCTGAGTGGTTGTGGGGCCAG-----------------------TGTGGGGAA-----------------TTGG-- i loxAfr3.scaffold_113 C 0 C 0 s myoLuc1.scaffold_53443 640 96 - 947 ------------AGAGTGTGCGGCC---GGACGGAG---------------------------AC--------GTGGGGCCC-AACGGGGGCC--------------CG------CCTGCGGCGGCGGG------TGAGGGGCTGGGAG----------------GAGGCCGG-----------------------GAGCGGTGA----------------CTCGGGG i myoLuc1.scaffold_53443 C 0 N 0 s equCab2.chr8 64188375 88 - 94057673 -----------------------------GAAGGGG---------------------------CT--------TTGGGG-------GGAGTCT--------------AG------ACTTGAGGGGTTGGCAGTTCTGGGGGCCAGGCAGC--------------CGGAATTGG-----------------------GAGTGAGGGAGCC------------CCTGAGG i equCab2.chr8 C 0 I 19 s bosTau4.chr17 30021170 163 - 76506943 ------------GTGGTGGGCGATGAAGGGACTGTGAAGCAGA-----CCATGAAGCTGATTAAT--------TTGGGGGTC-ACTTGAGGGTTGAGATATTG----GA------ATGTCTGTGGAAATCAATAATTTGGGGTTAGGAAGGG-ATGAATTGTTGTGAAACCAG-----------------------TGGAGGGAAGGATTTTT-----TTTTTTGGAG i bosTau4.chr17 I 46 I 26 s turTru1.scaffold_109773 116611 107 + 343976 ------------ATTGCGGACGTGCGAGGGCCGGTG----------------------------T--------GTGGGGATC--CGTGGGTCCGCAGACAGTGA-CTGG------ACGGCTGTAGTGATAAATGATGTGGGGT------------------GCGCAGTACTGG-----------------------TG-----------------------CTTGAAG i turTru1.scaffold_109773 I 20 I 18 s oryCun2.chrUn0106 726626 93 + 1032594 GC-----------GTGCAGGAAGC-----GGGGCAG---------------------------GG------------------ACTGGGGTGA-------------TGG------GCTCGTGCGGCCG------CGGGAAGCCCCTCGTGCGTTCGTGCGCTTGCGGGGCGAG-------------------------------------------------GCGAGC i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 312204 150 + 667635 GTGATAACTAGCAGTCCAGGACTT-----AGGAGAG---------------------------GGGAGAGATTCCGAGATCAAGCTAGGGAAT-------------TGGAGACCTGATCCTTCTGAAG------GAGTAGATTTGTAGGGTACTCGTCTGGCAGCGGGGCGAGTGATAGAATTTTCGGCACGGAAGGGAAC--------------------------- i cavPor3.scaffold_248 C 0 I 358 s papHam1.scaffold36733 6910 108 - 12949 A------------ATGTGGGGGTC-----GGGGGAG---------------------------AT--------TTGGGGTCA-GCTGGGCGGT--------TCA-CTGG------CGGCCTATGGAGGT---CCCTGTAGACTTGGGGTGCA-----GCGCGGGCGGGGCAAG-----------------------GGGAC---------------------GCGAGG i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274672 108 - 134511895 A------------ATGTGGGGGTC-----GGGGGAG---------------------------AT--------TTGGGGTCA-GCTGGGCGAT--------TCA-CTGG------CGGCCTATGGAGGT---CCCTGTAGACTTGGGGTGCA-----GCGCGGGCGGGGCAAG-----------------------GGGAC---------------------GCGAGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318301 108 - 136387465 A------------ATGTGGGTGTC-----GGGGGAG---------------------------AT--------TTGGGGTCA-GCTGGGCGAT--------TCA-CTGG------GGGCCTATGGAGGT---CGCTGTAGACTTGGGGTGCA-----GCACGGGCGGGGCAAG-----------------------GGGAC---------------------GCGAGG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 273978 108 - 135371336 A------------ATGTGGGTGTC-----GGGGGAG---------------------------AT--------TTGGGGTCA-GCTGGGCGAT--------TCA-CTGG------GGGCCTATGGAGGT---CGCTGTAGACTTGGGGTGCA-----GCACGGGCGGGGCAAG-----------------------GGGAC---------------------GCGAGG i panTro2.chr12 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3238451 302 + 42029645 I a score=-20322.000000 s hg19.chrUn_gl000223 150216 54 + 180455 TTGCCCTTGG--CCCCAGGG----------------------GAGAGG-----------GGCC---------CCTG----------------GGAG-GCCGT--GTGGAGGATTTGT s choHof1.scaffold_130871 4307 61 - 5136 ATAACGGGGAACCTCCGGGG-------------TGCATCGTCAGGAGC-----------AGCC---------TGTG----------------GGGGCCCAGC--TTTGGCGC----- i choHof1.scaffold_130871 C 0 C 0 s loxAfr3.scaffold_113 142366 65 - 3408981 TTGATTGGGGACTTCTAGGG-------------TGGATCATTGGAAGG-----------GGCC---------TTTG----------------GGGG-TCAGT--TTTGAAGCCTTGT i loxAfr3.scaffold_113 C 0 I 188 s equCab2.chr8 64188482 49 - 94057673 GAG-----AG--CGGTGGGG----------------------GGAGTG-----------TGCC---------GTTG----------------GGGG-TACAG--GTTGAGAGTTGGT i equCab2.chr8 I 19 C 0 s bosTau4.chr17 30021359 95 - 76506943 GCGCTGGGAG--AGAGGGAGCCCAGAGGTCACCC---TC--TGGAGTGAATGAAGGGCTGCTT---------GGTGTCACTGTGCACTG---GGAA-AGTGG--ATTGAGGGTTTGT i bosTau4.chr17 I 26 C 0 s turTru1.scaffold_109773 116736 90 + 343976 AAGCCGTCAG--TGATGCGG---------CACCTGGACC--TGGGGTGCCTTCTGGA--GGTC---------GGTG--ACGGCGGCCTGTGTGGAG-AGCAGAAACTGGGTGCCTGC i turTru1.scaffold_109773 I 18 C 0 s oryCun2.chrUn0106 726719 63 + 1032594 CTGCCTTGGG--GAGAGCGG----------------------GAGGGG-----------CGCTGGGCGTGCGCCCT----------------TGCG-GTCCT--GGGGAGGGTTTGC i oryCun2.chrUn0106 C 0 I 2 s papHam1.scaffold36733 7018 54 - 12949 CTGCTCTTGG--CCCTAGGG----------------------GAGAGG-----------GGCC---------CCTG----------------GGAG-GCCGT--GTGGAGGATGTGT i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274780 54 - 134511895 CTGCTCTTGG--CCCTGGGG----------------------GAGAGG-----------GGCC---------CCTG----------------GGAG-GCCGT--GTGGAGGATGTGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318409 54 - 136387465 TTGCCCTTGG--CTCCAGGG----------------------GAGAGG-----------GGCC---------CCTG----------------GGAG-GCCGT--GTGGAGGATTTGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 274086 54 - 135371336 TTGCCCTTGG--CCCCAGGG----------------------GAGAGG-----------GGCC---------CCTG----------------GGAG-GCCGT--GTGGAGGATTTGT i panTro2.chr12 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 312354 358 + 667635 I e canFam2.chr26 3238451 302 + 42029645 I a score=53294.000000 s hg19.chrUn_gl000223 150270 75 + 180455 CTGCAGC--------GATTAGGACTCTGCTGATGAATGATTTGGATGCCTTTG--------GGTGAGCATTG--GAGGCCAGC--------GGGGTGAATG s choHof1.scaffold_130871 4368 85 - 5136 CTGCGGTATTGAGCAGATGGGAATTCTGC-------CGGGTTGGGGGCATCTTAGCACCGAGGGGGGCAGTGATAAGGCCCGT--------GGGGTCCTT- i choHof1.scaffold_130871 C 0 C 0 s equCab2.chr8 64188531 72 - 94057673 -AGGAAT--------AATTAGGACTTTGGTGATCAATGATTTGGATGCTTTTG--------GCTCGGCGATT--GAGGCCAGT--------GAGAAAGA-- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30021454 73 - 76506943 -AGGAAT--------AGTTAAGGCTCTAGTGATCCATGATTTGGGTGC-CTTG--------GATTGGGGACT--GGACCCAAA--------GGGATGAATG i bosTau4.chr17 C 0 C 0 s turTru1.scaffold_109773 116826 70 + 343976 -TGGGGT--------CGGCAGAGGGCGACGAACTTGCCGTTTGGA--------------------GGAACCA--TGACCTTTAATGTTTGTGGGGTGAATG i turTru1.scaffold_109773 C 0 C 0 s oryCun2.chrUn0106 726784 55 + 1032594 CGGGGGT--------GGCTTGGGCTCT--CGATGAACGAAT---------------------GTTCGCCTTC--GGAGCC-------------GGTGGGCG i oryCun2.chrUn0106 I 2 C 0 s papHam1.scaffold36733 7072 75 - 12949 CTGCAGC--------GATTAGGACTCTGCTGATCAATGATGTGGATGCCTTGT--------GGTGAGCACTG--GAGGCCAGC--------GGGGTGAATG i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274834 75 - 134511895 CTGCAGC--------GATTAGGACTCTGCTGATCAATGATTTGGATGCCTTGT--------GGTGAGCACTG--GAGGCCAGC--------GGGGTGAATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318463 75 - 136387465 TTGCAGC--------GATTAGGACTCTGCTGATCAATGATTTGGATGCCTTTG--------GGTGAGCATTG--GAGGCCAGC--------GGGGTGAATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 274140 75 - 135371336 CTGCAGC--------GATTAGGACTCTGCTGATCAATGATTTGGATGCCTTTG--------GGTGAGCATTG--GAGGCCAGG--------GGGGTGAATG i panTro2.chr12 C 0 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 312354 358 + 667635 I e canFam2.chr26 3238451 302 + 42029645 I a score=14466.000000 s hg19.chrUn_gl000223 150345 43 + 180455 ATGAGGCTTC---TGCGGGG--------------GCCTGCGTTGGAGGGCTTAGGGGCTT s panTro2.chr12 274215 43 - 135371336 ATGAGGCTTC---TGCGGGG--------------GCCTGCTTTGGAGGGCTTAGGGACTT i panTro2.chr12 C 0 I 572 s ponAbe2.chr12 318538 43 - 136387465 ATGAGGCTTC---TGCGGGG--------------GCCTGCTTTGGAGGGTTTAGGGGCTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 274909 43 - 134511895 ATGAGGCTTC---TGCGGGG--------------GTCTGCTTGGGAGGGTTTAGGGGCTC i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 7147 42 - 12949 ATGAGGCTTC---TGC-GGG--------------GTCTGCTTGGGAGGGTTTAGGGGCTC i papHam1.scaffold36733 C 0 C 0 s oryCun2.chrUn0106 726839 37 + 1032594 AGGAGCCTTCGAGGGCGGAG--------------GCTTG-TCTAGAGGACTT-------- i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_109773 116896 49 + 343976 ATTGGGGTTC---TGTATGGTTTGGGGATGGCTGGGG--TTTGTGAGAGCTCTG------ i turTru1.scaffold_109773 C 0 C 0 s bosTau4.chr17 30021527 52 - 76506943 ATAAGGCCCT---TGAGGGGAGTCTGTTTGGGCAGCG---TTGAGAGGGCTCCGAGTG-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64188603 36 - 94057673 --ATGAACAT---TTTGGGG--------------GTG---TTTAGAGGCCTCAGAATT-- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 0 41 - 7911 ATAAGATCTT---CGTGGAG--------------GTGTGTTTGGGGGAGCTCAGAATT-- i felCat3.scaffold_2337 N 0 C 0 s choHof1.scaffold_130871 4453 37 - 5136 ----GGCTGC---TGTTTGG--------------GGGCACTTCGGAGGGAGTGAGCCT-- i choHof1.scaffold_130871 C 0 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 312354 358 + 667635 I e canFam2.chr26 3238451 302 + 42029645 I a score=10690.000000 s hg19.chrUn_gl000223 150388 30 + 180455 GCTTG---TGTGGGTTCCATTCACTGGAAAGCC s papHam1.scaffold36733 7189 28 - 12949 GCTTG---TGTGGGTTCCATTGAC--GGAAGCC i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274952 28 - 134511895 GCTTG---TGTGGGTTCCATTCAC--GGAAGCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318581 30 - 136387465 GCTTG---TGTGGGTTCCATTCACTGGAAAGCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 274830 30 - 135371336 GCTTG---TGTGGGTTCCATTCACTGGAAAGCC i panTro2.chr12 I 572 C 0 s oryCun2.chrUn0106 726876 10 + 1032594 -----------------------CTGCAAGGCC i oryCun2.chrUn0106 C 0 C 0 s turTru1.scaffold_109773 116945 14 + 343976 ---TGAATGGGG----------------AGACC i turTru1.scaffold_109773 C 0 N 0 s bosTau4.chr17 30021579 28 - 76506943 -GTTGAACTGAGGATTTCGTTGAC----AGGCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64188639 32 - 94057673 -GTCGGACTGAGGGTTTTGTTGCCTAGAAGGCC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 41 32 - 7911 -GGCGGCCCGAGGATTTCTTCGACTGGAAGGCC i felCat3.scaffold_2337 C 0 C 0 s choHof1.scaffold_130871 4490 23 - 5136 TGTTG---ACTGGATTCCGTCCGCTG------- i choHof1.scaffold_130871 C 0 I 91 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 312354 358 + 667635 I e canFam2.chr26 3238451 302 + 42029645 I a score=76663.000000 s hg19.chrUn_gl000223 150418 61 + 180455 TGCCGGCT-Gtgacagtgttggatttcaccagagccctgtgctcctggaaaacagcgaaggt s papHam1.scaffold36733 7217 60 - 12949 TGCCGGCT-Gtgacagtgttgaatttcgccagagccttgtgctcctgg-aaacagtgaaggc i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 274980 60 - 134511895 TGCCGGCT-Gtgacagtgttgaatttcgccagagccttgtgctcctgg-aaacagtgaaggc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318611 61 - 136387465 TGCCGGCT-Gtgactgtgttggatttcactagagccctgtgctcctggaaaacagcgaaggt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 274860 61 - 135371336 TGCCGGCT-Gtgacagtgttggatttcaccagagccctgtgctcctggaaaacagcgaaggt i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 726886 31 + 1032594 ----------------TGTTGGATTT-------------TGCTCCCGGAAGCCAGCGAGC-- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30021607 56 - 76506943 TTTTGGTT-GCTGcagtgttagact----ttgttccctgtgctcctggaaaacaggaaggt- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64188671 60 - 94057673 TCTTGGTT-GTGTTAGCgttggatttcacctgagcgctgtgctcctgggaagcagcctgct- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 73 60 - 7911 TGTTGGTTGGtgaccgtgctggattgta-ctgagcgctgggctcccgggaagcaggaaggt- i felCat3.scaffold_2337 C 0 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e cavPor3.scaffold_248 312354 358 + 667635 I e canFam2.chr26 3238451 302 + 42029645 I a score=23233.000000 s hg19.chrUn_gl000223 150479 36 + 180455 tgaggaatttcccacccttttgggttcca-gcaaatg s papHam1.scaffold36733 7277 36 - 12949 tgaggcatttcccacgcttttgggttcca-ggagatg i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 275040 36 - 134511895 tgaggaatttcccacccttttgggttcca-ggagatg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318672 36 - 136387465 tgaggaatttcccacccttttgggttcca-gcaaatg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 274921 36 - 135371336 tgaggaatttcccactcttttgggttcca-gcaaatg i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 312712 36 + 667635 TGGGGTTGTATCTACAACCtcgtgttcca-cgaaaat i cavPor3.scaffold_248 I 358 C 0 s oryCun2.chrUn0106 726917 24 + 1032594 TAAGACGCTTCCCGCGCTCCGGTG------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30021663 36 - 76506943 taagaagtcttccccttcccagggttcaa-ggaaaca i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64188731 28 - 94057673 gcaaa---------gaatccccttctcgatgtgagta i equCab2.chr8 C 0 I 4 s felCat3.scaffold_2337 133 36 - 7911 taagacgtctccccgcgtctcctgttcca-ggaagca i felCat3.scaffold_2337 C 0 I 59 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e canFam2.chr26 3238451 302 + 42029645 I a score=16868.000000 s hg19.chrUn_gl000223 150515 75 + 180455 gctcactgcaaagatctcccgttccct-atatga--ctttggtcagcct----ccaggatg--------ccccttgttcac----------------aca--gacctg s papHam1.scaffold36733 7313 74 - 12949 actcgctgcaaaga-ccccccttccct-atatga--tttaggtcagcct----ccaggatg--------ccccttgttcac----------------aca--gacccg i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 275076 74 - 134511895 actcgctgcaaaga-cccgccttccct-atatga--tttaggtcagcct----ccaggatg--------ccccttgttcac----------------aca--gacccg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318708 75 - 136387465 gctcactgcaaagatcccgcgttccct-gtatga--ctttggtcagcct----ccaggatg--------ccccttgttcac----------------aca--gacctg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 274957 75 - 135371336 gctcactgcaaagatcccccgttccct-atatga--ctttggtcagcct----ccaggatg--------ccccttgttcac----------------aca--gacctg i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 312748 88 + 667635 gctcactgcaat---acaacctcttcc-agataa--cataggtgagcct----caaggata--------cacccctgcctcagtaacagaccccaaaaca--ggtcct i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 726941 35 + 1032594 ------TGCGGA---CCCACCCCCTCC-A---------------------------------------------CCGCCGC----------------ACA--GAGCCT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30021699 73 - 76506943 ccttcttgcaaagaaccctgttcccctcacaggactctcttgtttacctgtgacaaggcca-------------tggataa----------------atatg------ i bosTau4.chr17 C 0 I 2 s equCab2.chr8 64188763 63 - 94057673 ------------ggactc---acgcct----gga--ccctggctggcctgtgacaagggcagaccccaaccctctgaattc----------------tca-------- i equCab2.chr8 I 4 C 0 e felCat3.scaffold_2337 169 59 - 7911 I e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e canFam2.chr26 3238451 302 + 42029645 I a score=189910.000000 s hg19.chrUn_gl000223 150590 231 + 180455 ccacgttgc---cgtcgcttgcctcatcggtgactggctgaac--------tccaccgagcggtcggagcaaaatgctccttaagcaaa---ctttag--ctaagcttctttc-------ctttccccattt----------tcttgagctttggcccatccccagcctgagcca-------------acacgcagcctcgcc--------------------tgagaac-aggctggctcagggtcaagctttccccgctctgctgtctggtcg-cc-cgcacttccacctcgcttggc s papHam1.scaffold36733 7387 230 - 12949 ccacgttgc---tggcgcttgcctcatcagtgactggctgaac--------tccactgagcggtcggagcaaaatgttccttaaccaaa---ctttag--ctaagcttctttc-------ctttccccattt----------tcttgagctttggcccatccccggcctgagcca-------------acacgcagcctcggc--------------------agagaac-aggctggctcagggtcaggcttcctctgctttgctgtctggtcg-cg-cgaacctccacctcgcttgg- i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 275150 230 - 134511895 ccacgttgc---tgtcgcttgcctcatcagtgactggctgaac--------tccactgagcggtcggagcaaaatgttccttaaccaaa---ctttag--ccaagcttctttc-------ctttccccattt----------tcttgagctttggcccatccccggcctgagcca-------------acacgcagcctcggc--------------------agagaac-aggctggctcagggtcaggcttcctctgctttgctctctggtcg-cg-cgaacttccacctcgcttgg- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 318783 231 - 136387465 ccacgttgc---cgtcgcttgcctcatcagtgactggctgaac--------tccactgagcggtcggagcaaaatgctccttaagcaaa---ctttag--ctaagcttctttc-------ctttccccattt----------tcttgagctttggcccatccccagcctgagcca-------------ccacgcagcctcgcc--------------------tgagaac-aggctggctcagggtcaagctttctctgctctgctgtctggtcg-cc-cgcacttcgacctcgcttcgc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 275032 227 - 135371336 ccacgttgc---ggtcgcttgcctcatcggtgactggctgaac--------tccaccgagcggtcggagcaaaatgctccttaagcaaa---ct------ctaagcttctttc-------ctttccccattt----------tcttgagctttggcccatccccagcctgagcca-------------acacgcagcctcgcc--------------------tgagaac-aggctggctcagggtcaagctttccccgctctgctgtctggtcg-cc-cgcacttccacctcgcttggc i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 312836 209 + 667635 gtatagttt---cagtctttacctcattggtgatgagccgagcag-ctgtgctcactcatcattcccaac-aaaaacttgttaactaaa---ccttgg--tt-agatacttta-------cttCCTGTAGTT----------CCTTAAGCCTTGATCCAT------------------------------GTacagcttctca--------------------tgagaaa-gggcag----------agatatcctttgattcattttctgatca-cc-ctaccccttaccccacttccc i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 726976 145 + 1032594 CCAGGGTTT---CCTTCTTGGCC-------------GCCCAGT-G-ATGTGCACACACG------------AGATGCGTGTCAAC--------------------------GA-------CCTCC--------------------------------------------------------------------CCACCTCGCC--------------------AGAGAGA-GGCTGGCCTCAGGA--CAACGTCCTCTGGTGGGCTCTTTAGCCA-CCGCCCACACACACCCCGCTTCTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30021774 269 - 76506943 accaactcctgtcatcctttacctcatcaatgattagctgaactgttggtcctcacacatc---------aaagcagttattaaccaaacttctttgg--ttcagcttctctt-------cttcccacagtt----------tcctgaactttggtggact-gcagcttgagcagccttacaGCCCTGACACCCCACCCCACCACCCCCGGCCGCCCGCCCATTGAGAAA-TGGCCAGCCTCTGGTGAAATGTCCTGTCATCTGCCATCTGGTCACCC-TGCCCTTTGATCCGGCATCCT i bosTau4.chr17 I 2 C 0 s equCab2.chr8 64188826 212 - 94057673 ------------------ttgtctcttcagtgattagctgaaatgttcctccccactgatcagtcggaacaaaatgcttgttaagtaga---ttttgg--tcaagcttctctc-------cttccc-cagtt----------ccctgaggtttggtctacccaccgcttgagtggcat---------------cagcccttcc--------------------tgggaatgtg--------cgggcagaatgttctccggtttactgtctggtc--cc-caccctttca-cgggctgccc i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 228 239 - 7911 ccaaactcc---catcctttgccccaccagcggtgagctggactg-ccgtccccactgagcagtcaggagaagacgattgttactgaga---cgtgggacttaagcctccttctcccccgcctccc-cacccccgccccaggccctgaactttgagtcactccctacttgagctgcttt---------gcgccccctccttcc--------------------cgagaac-tg--------c--------cctcctctgatctactctctgatcgtcc-tgccctttc------cttcca i felCat3.scaffold_2337 I 59 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e canFam2.chr26 3238451 302 + 42029645 I a score=52923.000000 s hg19.chrUn_gl000223 150821 123 + 180455 caggcctgg------tctttgctaacctt----------gttcacacctctctgtg----aaa-----------------------------gaaa----aaccctttttgcc----ttgc--------agagatgc-acgtgagtctcgtggc--ttcacggttcttcc------------------------------------------cag--aagcccgttctccttccc s panTro2.chr12 275259 123 - 135371336 caggcctgg------tctttgctaacctt----------gttcacacctctctgtg----aaa-----------------------------gaaa----aaccctttttgcc----ttgc--------agagatgc-acgtgagtctcgtggc--ttcacggttcttcc------------------------------------------cag--aagcccgttctccttccc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 319014 123 - 136387465 caggcctgg------tctttgctagcctt----------gttcacacctctctgtg----aaa-----------------------------gaaa----aaccctttttgcc----ttgc--------aaagatgc-acgtgagtctcgtggc--ttcgcggttcttcc------------------------------------------cag--aagcccgttctccttccc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 275380 123 - 134511895 caggcctgg------tcttggctaccctt----------gttcccgtctctctatg----aaa-----------------------------gaaa----atccctttttgct----ttgc--------agagacgc-acgtgagtctcgtggc--ttcggggttcttcc------------------------------------------cag--aagccccttcccctcCCC i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 7617 123 - 12949 caggcctgg------tcttggctacccct----------gttcacgtctctctatg----aaa-----------------------------gaaa----atccctttttgct----tTGC--------AGAGAGGC-ACGTGAGTCTCGTGGC--TTCGGGATTCTTCC------------------------------------------CAG--AAGCCCCTTCCCCTTCCC i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_27470.1-926 64 121 + 926 cacacctgg------tcttttctaacctg----------atttatttctttctata----aaa-----------------------------gaaa----a-ccttttttgcc----ttgg--------aaagacgc-ac----ttctcatggc--ctcagtgttctccctaatg-------------------------------------caa--tggcccctttt--ttccc i otoGar1.scaffold_27470.1-926 N 0 C 0 s cavPor3.scaffold_248 313045 161 + 667635 acggcctgg------ttctttttgacttt------------------gtttctacacatcaca-----------------------------taaa----aaccttttctggc----ttgc--------agaagtgc-ttgcaCCTAtttcttt--ctttctttctttctttttgtcttttttgagacggagtctatgcagttcaggctggcctt--gagctcactttgtagccc i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 727121 61 + 1032594 ---------------TCCTGCCTGGTGTA------------------CTCTCTCCA----ATA-----------------------------GAAA----AACCGCTCCTGGC----CT-----------------C-ATGC-----------------TCTGCCCTTCT----------------------------------------------------------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30022043 184 - 76506943 GACACCTTGCCGAAATGCTT-CTACCTCTTAGGGCCACAGCGTTTTCCCTACTTCA----GCACCCTGCACCACCCATGATAATAAATTCTTGGAGTGAAATATTTCTTTGCCAAGTCTGCATTTTTTAAAAGattc-acttatttattttggctgtgctgggtcttcgt------------------------------------------tg---ctgcatgcaggctttctc i bosTau4.chr17 C 0 I 216 s equCab2.chr8 64189038 107 - 94057673 cacacctgg------ttctt-ctgacctt----------ggttacccccttctgta----gaa-----------------------------gaaacaaaaaaactctttgtc----ttgc--------aaagatgcttagcacctcctcgggc----cagtgttctccc------------------------------------------cat-------------------- i equCab2.chr8 C 0 I 282 s felCat3.scaffold_2337 467 128 - 7911 cgctcctgg------ttctt-ctgacctt----------gtatctccctttccgtg----gaa-----------------------------ggaaccacgtaagtctttgcc----ctgc--------gtagatgc-tggcaactcttccggc--cacagcgttctccc------------------------------------------tattgtagtatgccccccgcctc i felCat3.scaffold_2337 C 0 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e canFam2.chr26 3238451 302 + 42029645 I a score=-14256.000000 s hg19.chrUn_gl000223 150944 69 + 180455 c-------------ttcccaaccctcttc-----------------------------------------------------------------------------------------------------------------cgcgtctttttt----tccccacttccaa-------taaccctttggaaccg--tctttctttgct s panTro2.chr12 275382 69 - 135371336 c-------------ttcccaaccctcttc-----------------------------------------------------------------------------------------------------------------cgcgtctttttt----tccccacttccaa-------taaccctttggaaccg--tctttctttgct i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 319137 68 - 136387465 c-------------ttctcaaccctcttc-----------------------------------------------------------------------------------------------------------------cgcgtc-ttttt----cccccacttccaa-------taaccctttggagccg--tctttctttgct i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 275503 64 - 134511895 C-------------TTCCCAACCCTCTTC-----------------------------------------------------------------------------------------------------------------CGCGTC-TTTTT----TCCCCACTTCCAG-------TAACCTTTCGGAGCCG------TCTTTGCT i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 7740 64 - 12949 C-------------TTCCCAACCCTCTTC-----------------------------------------------------------------------------------------------------------------CGCGTC-TTTTT----CCACCACTTCCAA-------CAACCTTTCGGAGCCG------TCTTTGCT i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_27470.1-926 185 44 + 926 c----------------------------------------------------------------------------------------------------------------------------------------------------ctttg----cccaca-----aa-------ttatcctttggaataaagtctttccttact i otoGar1.scaffold_27470.1-926 C 0 C 0 s cavPor3.scaffold_248 313206 203 + 667635 aggctggtctcgaactcgcaacgatcctcccacctcagcctcccgagtgctgggattacaggcatgagctaccacacctggcACCCTTGCACCTATTTCTGAGGGCCTTGGTGTGGTCCCTAATTGGTGTCCTCCTCCCTGTTGCAAC-AGTTCCTCTCTCGCCCTCCTAACCCCCAATAATCCTTTGGAATTA----AATCTTTCCT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 727182 39 + 1032594 --------------CTCCCGACAGTCTTC-----------------------------------------------------------------------------------------------------------------TGCGAC-AGTTC----TCTGCTCTCCTGA------------------------------------- i oryCun2.chrUn0106 C 0 C 0 s felCat3.scaffold_2337 595 34 - 7911 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcag-------taa--ctgtggactaaggtatttctttacc i felCat3.scaffold_2337 C 0 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e bosTau4.chr17 30022227 216 - 76506943 I e equCab2.chr8 64189145 282 - 94057673 I e canFam2.chr26 3238451 302 + 42029645 I a score=55324.000000 s hg19.chrUn_gl000223 151013 52 + 180455 ctgtccagttgtatgttttatttgacaGCTGAATAACAGTGGTTGCTCTTTC s panTro2.chr12 275451 52 - 135371336 ctgtccagttgtatgttttatttgacaGCTGAATAACAGTGGTTGCTATTTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 319205 52 - 136387465 ctgtccagttgtatgttttctttgacaGTTGAATAACAGTGGTTGCTGTTTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 275567 52 - 134511895 GTGTCCAGTTGCATGCTTTATTTGACAGCTGAATAACGGTGGTTGCTGTTTC i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 7804 52 - 12949 GTGTCCAGTTGCATGTTTTATTTGACAGCTGAATAACGGTGGTTGCTGTTTC i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_27470.1-926 229 45 + 926 ccatctggaactgggttttact-------tgaGTAAAAGTGCTTGCTGTTTC i otoGar1.scaffold_27470.1-926 C 0 C 0 s cavPor3.scaffold_248 313409 40 + 667635 CAGTCTGGA------TTTACTTGGGCAGTT------AAATGGCTGCTGTTTC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 727221 21 + 1032594 ---TTTGCT------TTTTGTTTGACAGTT---------------------- i oryCun2.chrUn0106 C 0 C 0 s felCat3.scaffold_2337 629 31 - 7911 ---------------tTCTATTTGGCAGTT------CAGCGGTAGCTGTTTC i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64189427 30 - 94057673 ----------------TCTATTTGACAGTC------CAATGGTAGCTTTTTC i equCab2.chr8 I 282 C 0 e loxAfr3.scaffold_113 142431 188 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e bosTau4.chr17 30022227 216 - 76506943 I e canFam2.chr26 3238451 302 + 42029645 I a score=114737.000000 s hg19.chrUn_gl000223 151065 97 + 180455 AACCCCTGTCTCCAAT------------------------------AGCGGAGGC----------GAGTA--TGGGGTGGCCTATGCTGGCGAGTGGCTGGGGTTTGTTTCTGTGCTTGTGTTT-GGGGATCTTATGATG s bosTau4.chr17 30022443 117 - 76506943 aagcccTGTATTTGTTTTGGCCTGACAGTTTAGTGGTAGCTTTTTTAGTGGAGGG----------GAGTGACTAGGGTGGCCCGGGCTGGTGAGTGG------------TCTGGGTCTGTGTTT-GGGGATCTGGTGACC i bosTau4.chr17 I 216 C 0 s papHam1.scaffold36733 7856 95 - 12949 AACGC--GTCTCCAAT------------------------------AGCGGAGGC----------GAGTG--TGGGGTGGCCTGTGCTGGCGAGTGGCTGGGGTTGGTTTCTGTGCTTGTGTTT-GGGGATCTTATGATT i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 275619 95 - 134511895 AACCC--GTCTCCAAT------------------------------AGCGGAGGC----------GAGTA--TGGGGTGGCCTATGCTGGCGAGTGGCTGGGGTTGGTTTCTGTGCTTGTGTTT-GGGGATCTTATGATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 319257 97 - 136387465 AACCCCTGTCTCCAAT------------------------------AGCGGAGGC----------GAGTA--TGGGGTGGCCTATGCTGGCGAGTGGCTGGGGTTCATTTCTGTGCTTGTGTTT-GGGGGTCTTAGGATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 275503 97 - 135371336 AACCCCTGTCTCCAAT------------------------------AGCGGAGGC----------GAGTA--TGGGGTGGCCCATGCTGGCGAGTGGCTGGGGTTCGTTTCTGTGCTTGTGTTT-GGGGATCTTATGATG i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 142619 92 - 3408981 ------------------------------------------AATAACTGGAGGCCAGTGTGTATGAGTGACTGAGATGGCCAG---AAATGAGTGGTCAAGGATCCTTTCTAGGCC-ACGTTT-GGGGG-CTTGAAATT i loxAfr3.scaffold_113 I 188 C 0 s felCat3.scaffold_2337 660 72 - 7911 ----------------------------------------------GATGGAGGG----------GGAGGACCGGGATGGCCTGTGCTGCTGAGTGG------------TCTGTGCCTGTGTTTGGGAGGTTTTGTGGTT i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64189457 70 - 94057673 ----------------------------------------------GGTGGAGGG----------GAATGACTGGGGTGACCATGGCTGGTGAGTGG------------TTTAGGCCTGTGTT--GGGGTTCTTGTAACT i equCab2.chr8 C 0 C 0 s cavPor3.scaffold_248 313449 79 + 667635 ----------------------------------------------CGTGGAGGT----------GAGAGG-CTGGGTAGCCTGTGCTGATGG--TGTTGGGGTTCTTCTGTAGGCCCGTTTTT-GGGG-TCTTGCAATT i cavPor3.scaffold_248 C 0 C 0 s otoGar1.scaffold_27470.1-926 274 59 + 926 ----------------------------------------------AGGGTAGGT----------GAATGACTGGGGTTACCTATCCAGGAGAGTGGTTG-------------------------GGGGATGGCATATTT i otoGar1.scaffold_27470.1-926 C 0 C 0 e oryCun2.chrUn0106 727242 0 + 1032594 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I e canFam2.chr26 3238451 302 + 42029645 I a score=237665.000000 s hg19.chrUn_gl000223 151162 109 + 180455 GAAGCATTAGGAAT---GGCGCTGTGTATTTGTGACAAGGGAGTCTGGATGTAAGTTAATGG----TG----GACCTGTTGCAAGTTGTGAGTGCGTGGACAACGGGGGTCATACTTGGC--------------- s panTro2.chr12 275600 109 - 135371336 GAAGCATTAGGAAT---GGCGCTGTGTGTTTGTGACAAGGGAGTCTGGATGTAAGTTAATGG----TG----GACCTGTTGCAAGTTGTGAGTGCGTGGACAACGGGGGTCATACTTGGA--------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 319354 116 - 136387465 AAAGCATTAGGAATGGGGGCGCTGTGTGTTTGTGACGAGGGAGTCTGGATGTAAGTTAATGA----TGGACCGACCTGTTGCAAGTTGTGAGTGCGTGGACAACGGGGGTCATACTTGGC--------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 275714 111 - 134511895 GAAGCACTAGGAATGGGGGCGCTGTGTGTTTGTGACAAGGGAGTCTGGATGTAAGTTAATGG----TG----GACCCGTTGCAGGTTGTGAGTGCGTGGACAAC-GGGGTCGTACTTGGC--------------- i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 7951 111 - 12949 GAAGCACTAGGAATGGGGGCTCTGTGTGTTTGTGACAAGGGAGTCTGGATGTAAGTTAATGG----TG----GACCCGTTGCAGGTTGTGAGTGCGTGGACAAC-GGGGTCGTACTTGGC--------------- i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_27470.1-926 333 107 + 926 GAGGCATCAGAGATGGGGACATTGTGTGTCTGTGACAAGAGAGCCAGGGTATAGATTAGAGG----TT----GATCTCTT-TGGGTTGTGA----GTAGACAATGGGGGTAGGAACTGGA--------------- i otoGar1.scaffold_27470.1-926 C 0 C 0 s cavPor3.scaffold_248 313528 93 + 667635 GAAGCATCACAGATTGGAGTGCTGT-----------------GTCTGAATATAAGTTAATGATTGTTT----GGTCTGATGGAA--TGTGA----AGGGTCAGAGGGGCTAGTAATTGGA--------------- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 727242 90 + 1032594 AAGGCATCAGAGA-TGGGGCGCCGTAC---------------GTTAGGGTGTAAGTTGATGG----CT----GGCCTGTTGGGG-TTGTGA----GTGCACAGTGGGAGTGG-AATTGAG--------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30022560 107 - 76506943 GAGATGTCAGGT-TGGGGGC--TGTGTATCAGTGTTGGGG--GTCTGCGCTTAAGTTGATAG----GT----GGCCTGTTGGGGGTTATGAGTGAGTGGAAAACGGGGATGGTATTTGGC--------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64189527 111 - 94057673 GAGGCATCAGGGATTGGGGCACTGTATGTCAGTAACAAGGG-GTCAGGATACAAGTTGATGG----GT----GGCCTGTTGGGGGTTGTGAGTAGGTGGACACTGGGGGTAGTAATTGGA--------------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 732 108 - 7911 GAGGCGTCAGGGACTGGGGCACTGCGTGTCAGTGACAAGG---TCTGGATACGAGTTGGTGG----GT----GGCCTG-TGGGGGTTGTGAGCGAGCAGACGGTGCGGGTAGTAACTAGA--------------- i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3238753 89 + 42029645 ----------------------TGTGTGGCGTTCACAAGGC-ATCTGGATGCAAGTGGATGG----GT----GGCCCACTAGGGGCTGTGAAGCAGCAGACGGTGGGAGTATTAGTTGGA--------------- i canFam2.chr26 I 302 C 0 s loxAfr3.scaffold_113 142711 120 - 3408981 GAGGCATCAGAGTTTGGGGAACTGTGGGTCAG-GGCAAGGGGGTCTCTATATAA----ACGG----CA----GGTCTGTTGGCGGTGGTGATTGCGAGGATGT--GGAATAGTAATTGCAGGCCTTTTGTTGGGA i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e choHof1.scaffold_130871 4513 91 - 5136 I a score=443781.000000 s hg19.chrUn_gl000223 151271 182 + 180455 GTCATTGGAGGGG---CCTGCGGGATCGGCATT-TGTGCA-----GAGCCCCACAATCCCTTTCCAGGTGGTGTTTGGGAGGGCCTGTGGGAATGTCAGTGAAT--GCT---CCAGCATGGAGTGGATTAGAGAATGGGGTGTCAT--GGGGG--CGAATGCTTGGGGGCCCCG-GG-GATAAGGGATTAGGGATCCCTGGG s panTro2.chr12 275709 182 - 135371336 GTCATTGGAGGGG---CCTGCGGGATCGGCATT-TGTGCA-----GAGCCCCACAATCCCTTTCCAGGTGGTGTTTGGGAGGGCCTGTGGGAATGTCAGTGAAT--GCT---CCAGCATGGAGTGGATTAGAGAATGGGGTGTCAT--GGGGG--CGAATGCTTGGGGGCCCCG-GG-GATAAGGGATTAGGGATCCCTGGG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 319470 182 - 136387465 GTCATTGGAGGGG---CCTGCGGGATCGGCATT-TGTGCA-----GAGCCCCACAATCCCTTTCCAGGTGGTGTTTGGGAGGGCCTGTGGGAATGTCAGTGAAT--GCT---CCAGCATGGAGTGGATTAGAGAATGGGGTGTCAT--GGGGG--CGAATGCTTGGCGGCCCCG-GG-GATAAGGGATTAGGGATCCCTGGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 275825 181 - 134511895 GTCATTGGAGCGG---CCTGCGGGGTCGGCATT-TCTGCA-----CAGCCCCACAATCCCTTTCCAGGTGGTGTCTGGGAAGGGCTATGGGAGTGTCAGTGAAT--GCT---CCAGCATGGAGTGGATTAGAGAATGGGGTGTCAT---GGGG--CAAATGCTTGGGGGCCCCA-GG-GATAAGGGATTAGGGATCCCTTGG i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 8062 181 - 12949 GTCGTTGGAGCGG---CCTGCGGGGTCGGCATT-TGTGCA-----CAGCCCCACAATCCCTTTCCAGGTGGTGTCTGGGAAGGGCTATGGGAGTGTCAGTGAAT--GCT---CCAGCATGGAGTGGACTAGAGAATGGGATGTCAT---GGGG--CGAATGCTTGGGGGCCCCA-GG-GATAAGGGATTAGGGATCCCTTGG i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_27470.1-926 440 176 + 926 GTCAGTGGAAGGG---C--------TCAATGGT-TGTATA-----GTGCAGAACAAAGCCTTTCCAGGTGATGAGTGGGAGAGCCTGTGGG-TTGTCAGCAAATGGGGG---TTAGTGTGGAGTGGATTAGAGAATAGGATATCAT--GGGGA--TAAATGCCTGGAGGCTCTGTGG-GATGAAGGATTGGGGTTTCCTTGG i otoGar1.scaffold_27470.1-926 C 0 C 0 s cavPor3.scaffold_248 313621 177 + 667635 GCTGCTGGAAAGG---TTTGAGGTACTAGTGTT-TGCACA-----GGGC--TGGAAGCGCTTTCAGGGTA----TGAAAAAAGCCTATGGGGCTGTCAGTGAAT--GGTAAGTGATCGTGGAGTGGATTAGAGAATAGGACTCTCTATGCAGG--TGAATTCTT----GACTGT-GA-GATAGGATGTTGGGGATCCTTTGG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 727332 154 + 1032594 GCCACT-GAGGGG---CCTGGGGTGTCGGTGTCATGCAGA-----GAG-----------------------------GGAGAGCCTCTGGGG-GGCCAGTGAAT--GGTGGGTGAGCCTGACGTGGAATAGAGAATGGGAGTCTCG----GGG--TGAATGCTTTGGGGCCTTA-GAGGACAAGGGATTAGGGATCCTTTGG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30022667 174 - 76506943 ATTGTTGGAGGGG---CTGGGGGTGTTGGTGTT-TGTATG-----GCTC--TGGAGGCCCTTGCAGAGTGATGAG---------CTGTGGGGATATCAGCAAGT--GGTGGGTGAGCACAGGGTGGACTAGAGAGTG-GATATCAA--GGAGG--TGAGTGGCTGGCAACCCTA-TGTGATGAGGGGCTGGGGACCACTGGG i bosTau4.chr17 C 0 I 1 s equCab2.chr8 64189638 146 - 94057673 GTCATTGGAGGGG---TTGAGGGTGTCAGAGTT-TGTGCA-----GAGC--TGGAGGCC-------------------------CTGTGTGGTGGTCAGTGAAT--GGTGGGTCAGCACTGG------------GTGGGATGTCAT--GGAGG--TGAATGG-TGGGGCCCCTG-TGTGATAAAGGATTGGGGATCCCTTGA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 840 178 - 7911 GTCATTGGAGGTA---GC----------GTGTT-AGGGCAGGGCGGAGC--TGGCGGCCCGTTCAG-GTGACGATGGTGAGGATCTGTAGGGGTGCTAGTGAAT--GGTGGGTGAGCGTGGGGTAGATTAGAAAGTGGGGTGTCAT--GGAAG--TGAGTGGTTGGGGTCCCCG-TATGATTACGGATTGGGCATCCCCTGG i felCat3.scaffold_2337 C 0 I 75 s canFam2.chr26 3238842 174 + 42029645 GGTACCAGGGTAT---GT----------GGGTT-TATGCA-----GAGT--TGGTGGCCCTTTCAG-GTAATGATTAGGAGCACCTGCAGGGGTGTTAGTCGAT--GGTGGGTAAGCATGGGCTATACTAGAAAGTGAGGTATCAT-GGGAGG--TGAATGGTTGGGGCTTCTG-GATAATGAGGGATTGGGTGTGCCTTAG i canFam2.chr26 C 0 I 1 s loxAfr3.scaffold_113 142831 182 - 3408981 GTCATTGCAGGGGGTGCCTGAGATGTCAGTATT-TGTGGA-----CAGT--GGGAAGCCCTTTCAGAATGACAATTAGAAAGCCATATGGGAGTGTCAGTGGAT--GATGAGTGAGCATGGGGTGCATCAGAGAATGGGGTGTCAC--GTGGG-GTGAATGCTTGGAGGCCCTG-TGGGATAAGGGATTG------TTTGGG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_130871 4604 171 - 5136 GTCGTTGGAGGGG----CTGGGGTGTTGGTGTT-TTGGGA-----GAGC--TGGGGGCCCTTTCGCGGTGAGGATTA------------GGCGGGTCATTGAAT--GGTGGGAGAGCAAGGGGTGCATCAGAGAAGGGGGTGTCAT--GTGGGCCCGCATACT--GGGGCTCCG-AGGGAGGAGGGATTAGGGATTCCCTGT i choHof1.scaffold_130871 I 91 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=37873.000000 s hg19.chrUn_gl000223 151453 39 + 180455 CATTGAGTGACTGGGGTCTAATTTAGGGGGTC-TGTGGCG s panTro2.chr12 275891 39 - 135371336 CATTGAGTGACTGGGGTCTAATTTAGGGGGTC-TGTGGCG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 319652 21 - 136387465 CATTGAGTGACTGGGGTCTAA------------------- i ponAbe2.chr12 C 0 I 587 s rheMac2.chr11 276006 37 - 134511895 CATTGAGTGAC--GGGTCCAATTTAGGTGGTC-TGTGGCG i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 8243 37 - 12949 CATTGAGTGAC--GGGTCCAATTTAGGTGGTC-TGTGGCG i papHam1.scaffold36733 C 0 C 0 s otoGar1.scaffold_27470.1-926 616 38 + 926 AGTTTGGGGACT-GGGGCTAATTTTGGCAGTC-TGTGGTG i otoGar1.scaffold_27470.1-926 C 0 N 0 s cavPor3.scaffold_248 313798 32 + 667635 GGTTTA-------TAAGCTAATTTAAATGGGC-TATGGTA i cavPor3.scaffold_248 C 0 I 11 s oryCun2.chrUn0106 727486 31 + 1032594 TGAATG-------T-GGCTAATTTAGGTAGTC-TGTGGTA i oryCun2.chrUn0106 C 0 I 9 s bosTau4.chr17 30022842 38 - 76506943 GGGTTAGTGACG-GGGGCTAGTTTAGGTGGTA-GGTGGTG i bosTau4.chr17 I 1 I 11 s equCab2.chr8 64189784 37 - 94057673 -GGTTAGTGATG-GGGGTTAATTGAGGGGGCT-GGTGATG i equCab2.chr8 C 0 I 11 s canFam2.chr26 3239017 7 + 42029645 ---------------------------------TATAGTG i canFam2.chr26 I 1 I 11 s loxAfr3.scaffold_113 143013 36 - 3408981 -GTTTAGTGAT--GGGGCTACTTTACGCAGCT-TGTGGTG i loxAfr3.scaffold_113 C 0 C 0 s choHof1.scaffold_130871 4775 39 - 5136 -GCTTAGAGACTGGGGGCTAATTTAGGGAGGTCTGTGTTG i choHof1.scaffold_130871 C 0 C 0 e felCat3.scaffold_2337 1018 75 - 7911 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-9753.000000 s hg19.chrUn_gl000223 151492 85 + 180455 CAAGCCTCAGAATGTCAG-TTACAGGGGAGG----GGCTC--------TGTGAGC----------GCCTGACTT---GGGC-ACCTGATGAAGTGAGTGAATGGAGACCAGT s panTro2.chr12 275930 86 - 135371336 CAAGCCTGAGAATGTCAGTTTACAGGGGAGG----GGCTC--------TGTGAGC----------GCATGACTT---GGGC-ACCTGATGAAGTGAGTGAATGGAGACCAGT i panTro2.chr12 C 0 C 0 s rheMac2.chr11 276043 85 - 134511895 CAAGTCTGAGAATGTCAG-TTATTGGGGAGG----GGCTC--------TGTGAGC----------GCGTGACCT---GGGC-ACCTGATAAAGTGAGTGAATGGAGACCAGT i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 8280 85 - 12949 CAAGTCTGAGAATGTCAG-TTATTGGGGAGG----GGCTC--------TGTGAGC----------GCGTGACCT---GGGC-ACCTGATAAAGTGAGTGAATGGAGACCGGT i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 313841 72 + 667635 CAAGACTTAAGATGTC-A-TCGATGGGG-------AGCTA--------TGTGAGA----------GAGCTGTTG---GGGGTGGCTGTTAAGGTGTGTGGTT---------- i cavPor3.scaffold_248 I 11 I 258 s oryCun2.chrUn0106 727526 69 + 1032594 CAAGCCTGAGGATGT--G-CTGAGGGGGAGGGAGCAGCTG--------TAGGAGA----------GTGCCTGGA---GGTCTGTGGGTCCTTG------------------- i oryCun2.chrUn0106 I 9 I 189 s bosTau4.chr17 30022891 59 - 76506943 CAAGCCTGCA----------------------------CC--------TGTGAA------------GGTGAGTGGGTGGGT-ACCCATAGAAGGGAGTGATGGGAGGT---- i bosTau4.chr17 I 11 C 0 s equCab2.chr8 64189832 66 - 94057673 CAAGCCTGAGG------G-----------------GGCTC--------TGAGAAC-----------AGTGATTA---GGGC-ACCTGTTAAGATGAGTGAATGGGTGCCTGT i equCab2.chr8 I 11 I 17 s canFam2.chr26 3239035 55 + 42029645 CAAGCCTGAGG------G-----------------GGCTC------TGTGGGAAC-----------AGTGACTG---GGGC-ACT------GTTGAGTGGATGGA------- i canFam2.chr26 I 11 I 12 s loxAfr3.scaffold_113 143049 77 - 3408981 -------------------ATAAGAAACAGT----GAAATGTCAATAATGGGGGTTTTGCGAGAGCAGCGAC-T---GGGT-ACCTGTTAAGGTGAGCGAGTGGA------- i loxAfr3.scaffold_113 C 0 I 788 s choHof1.scaffold_130871 4814 61 - 5136 -------------------GTGAGAGGCAGT----GAGCC--------TGAGGGTGT--------CAGCGACGG---GGGC-GCCTGTTGAGGTGAGAGAATGG-------- i choHof1.scaffold_130871 C 0 N 0 e felCat3.scaffold_2337 1018 75 - 7911 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 319673 587 - 136387465 I a score=19157.000000 s hg19.chrUn_gl000223 151577 59 + 180455 GTGTTCGTCCCAGGACAGAAGCcccttctcctcccctccccacccttctcctcccctcc s panTro2.chr12 276016 59 - 135371336 GTGTTCGTCCCAGGACAGAAGCcccttctcctcccctcctcacccttcttctcccctcc i panTro2.chr12 C 0 I 514 s rheMac2.chr11 276128 42 - 134511895 GTGTTCGTCCCAGGACAGCAGCCCGTTCTCCTCCCCTCCCCA----------------- i rheMac2.chr11 C 0 I 25 s papHam1.scaffold36733 8365 42 - 12949 GTGTTCGTCCCGCGACAGAAGCCCCTTCTCCTCTCCTCCCCA----------------- i papHam1.scaffold36733 C 0 I 25 e felCat3.scaffold_2337 1018 75 - 7911 I e oryCun2.chrUn0106 727595 189 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 319673 587 - 136387465 I e cavPor3.scaffold_248 313913 258 + 667635 I e bosTau4.chr17 30022950 0 - 76506943 C e equCab2.chr8 64189898 17 - 94057673 I e canFam2.chr26 3239090 12 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 151636 17 + 180455 ctacccttctcccccca e felCat3.scaffold_2337 1018 75 - 7911 I e oryCun2.chrUn0106 727595 189 + 1032594 I e papHam1.scaffold36733 8407 25 - 12949 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 276075 514 - 135371336 I e ponAbe2.chr12 319673 587 - 136387465 I e rheMac2.chr11 276170 25 - 134511895 I e cavPor3.scaffold_248 313913 258 + 667635 I e bosTau4.chr17 30022950 0 - 76506943 C e equCab2.chr8 64189898 17 - 94057673 I e canFam2.chr26 3239090 12 + 42029645 I a score=15081.000000 s hg19.chrUn_gl000223 151653 72 + 180455 cccttctcc-cccttccccacccttctcccccctccccacccttttcctcccctccccacccttttcctcccc s rheMac2.chr11 276195 70 - 134511895 cccttctcctcccctccccaccctt---ccccccccacatccttctcctcccctttctacccttctcctcccc i rheMac2.chr11 I 25 C 0 s papHam1.scaffold36733 8432 71 - 12949 cccttctcctcccctccccaccctt--ctcccccccacacccttctcctcccctttctacccttctcctccct i papHam1.scaffold36733 I 25 C 0 e felCat3.scaffold_2337 1018 75 - 7911 I e oryCun2.chrUn0106 727595 189 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 276075 514 - 135371336 I e ponAbe2.chr12 319673 587 - 136387465 I e cavPor3.scaffold_248 313913 258 + 667635 I e bosTau4.chr17 30022950 0 - 76506943 C e equCab2.chr8 64189898 17 - 94057673 I e canFam2.chr26 3239090 12 + 42029645 I a score=11589.000000 s hg19.chrUn_gl000223 151725 36 + 180455 tccccacccttttcctcccctccccacccttctcct s papHam1.scaffold36733 8503 27 - 12949 tccctactcttctcttcccctccccgc--------- i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276265 34 - 134511895 ttcctacccttctcctcccttccctactcttctc-- i rheMac2.chr11 C 0 C 0 s panTro2.chr12 276589 36 - 135371336 tccccacccttctcctcccctccccacccttctcct i panTro2.chr12 I 514 C 0 e felCat3.scaffold_2337 1018 75 - 7911 I e oryCun2.chrUn0106 727595 189 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 319673 587 - 136387465 I e cavPor3.scaffold_248 313913 258 + 667635 I e bosTau4.chr17 30022950 0 - 76506943 C e equCab2.chr8 64189898 17 - 94057673 I e canFam2.chr26 3239090 12 + 42029645 I a score=-5394.000000 s hg19.chrUn_gl000223 151761 78 + 180455 ccccCATCCTTCTCATCCCCTCCCCA-----CCTCACCTGCAGGAGT--GACTGA-----AGCcc----cttctcccccgctccccac---------------------------ccttct s panTro2.chr12 276625 78 - 135371336 cccccatccttctcgtcccctccccA-----CCTCACCTGCAGGAGT--GACTGA-----AGCcc----cttctcccccgctccccac---------------------------ccttct i panTro2.chr12 C 0 C 0 s rheMac2.chr11 276299 31 - 134511895 ---------------ttcccttcccc-----gctcac-------------------------------------------ctccccac---------------------------ccttct i rheMac2.chr11 C 0 I 4 s papHam1.scaffold36733 8530 23 - 12949 ---------------tcccctcccca-----cc-----------------------------------------------cttctctt---------------------------cc---- i papHam1.scaffold36733 C 0 C 0 s oryCun2.chrUn0106 727784 120 + 1032594 -cctccatctgctggttcgctccccaaatggccacaacagccagagctgaactgatcaggagccaggagcttcctctgggtctcccacatgggtgcaggggcccaaagacttgggccatct i oryCun2.chrUn0106 I 189 I 138 e felCat3.scaffold_2337 1018 75 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 319673 587 - 136387465 I e cavPor3.scaffold_248 313913 258 + 667635 I e bosTau4.chr17 30022950 0 - 76506943 C e equCab2.chr8 64189898 17 - 94057673 I e canFam2.chr26 3239090 12 + 42029645 I a score=72601.000000 s hg19.chrUn_gl000223 151839 63 + 180455 cctcccctccccAGCTCATCTGCAGGAGTATCTGAGTTCTGTGGGGATCCTTTGGGACTCAGA s papHam1.scaffold36733 8553 62 - 12949 -cctccctccccAGCTCACCTGCAGGAGTGTCTGAGTTCTGTGGGGATCCTTTGGGACTCAGT i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276334 63 - 134511895 ccctccctccccAGCTCACCTGCAGGAGTGTCTGAGTTCTGTGGGGATCCTTTGGGACTCAGT i rheMac2.chr11 I 4 C 0 s ponAbe2.chr12 320260 62 - 136387465 CCTCCCCTCCCCAGCTCATCTGCAGGAGTGTCTGAGTTCTGTGGAGATCATTTGGGA-TCAGT i ponAbe2.chr12 I 587 C 0 s panTro2.chr12 276703 63 - 135371336 cctccccttcccAGCTCATCTGCAGGAGTATCTGAGTTCTGTGGGGATCCTTTGGGACTCAGA i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30022950 25 - 76506943 --------------------------------------CTGCAGGTGTCCTTTGGGACTCAGC i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3239102 39 + 42029645 ------------------------GAAGGACTGGAGTCCTGGGGTGGTTCATGGGGACTCAGT i canFam2.chr26 I 12 C 0 s felCat3.scaffold_2337 1093 30 - 7911 ---------------------------------GAATTCTGTAGGGGTCCTTTGGGACTCAGT i felCat3.scaffold_2337 I 75 C 0 s equCab2.chr8 64189915 30 - 94057673 ---------------------------------GAGGTCTGTGGAGGCCCTTTGGGATTCAGT i equCab2.chr8 I 17 C 0 e oryCun2.chrUn0106 727904 138 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 313913 258 + 667635 I a score=102738.000000 s hg19.chrUn_gl000223 151902 60 + 180455 GTTTGGGGTTTC-------------------------------AGTC--TGTGGTGATTCTTAAGTGGGGCTTTGGGGGTGCTGGTGATTATG s panTro2.chr12 276766 60 - 135371336 GTTTGGGGTTTC-------------------------------AGTC--TGTGGTGATTCTTAAGTGGGGCTTTGGGGGTGCTGGTGATTATG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0522276 8 60 - 800 GTTTGGGGTTTC-------------------------------AGTC--TGTGGTGATTCTTAAGTGGGGCTTTGGGGGCGCTGGTGATTATG i gorGor1.Supercontig_0522276 N 0 C 0 s ponAbe2.chr12 320322 60 - 136387465 GTTTGGGGTTTC-------------------------------AGTC--TGTGGTGATTCTTAAGTGGGGCTTTGGGGGTGCTGGTGATTATG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 276397 60 - 134511895 GTTTGGGGTTTC-------------------------------AGTC--TGTGGTGATTCTTAAGTGGAGGTTTGGGGGTGCCGGTGATTATG i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 8615 59 - 12949 GTTTGGGGTTTC-------------------------------AGTC--TGTGATGATTCTTAAGTGGGG-TTTGGGGGTGCTGGTGATTATG i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 314171 42 + 667635 ---------------------------------------------------TGGCATTTATTAAATGGGACCTAGGGGAAGCTGGGGATGGGG i cavPor3.scaffold_248 I 258 C 0 s equCab2.chr8 64189945 88 - 94057673 GTTTGGAGCTTCACACGTTTGGTTTCTAGTCAATGAAT-----AGACGCTGTGGAGATTAACAAATGGGGGTTTGGTGGAACCAGTGATGAGG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 1123 87 - 7911 GTTGAGGATTGCACTGACTCCATTCCTAGTCAATGAGT-----AGACTCTGCTGAGATTACTGGATGGGAGTGTAGGGGAGCCAGTGACG-GG i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3239141 92 + 42029645 GTTGAGGATCTCACTGACTCCACTACTGGTCAACGAATAGAACAGACTCTGTCGAGATTATTGGGTGGGAGTGTGAGGGAACCAGTAATG-GG i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30022975 81 - 76506943 ATGTGAGATTCCAGTGA--CAGTTTCTAGTCAACGAGG-----AGCC----TGGAGATTTTTGAGTGGGA-TTTGGAGGAGCCAGTGATGGGG i bosTau4.chr17 C 0 C 0 e oryCun2.chrUn0106 727904 138 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=66387.000000 s hg19.chrUn_gl000223 151962 42 + 180455 GTGTCT-G---------GCATCTGTATTTAAAAGCCCTGTGGGAGTCACTGA s papHam1.scaffold36733 8674 43 - 12949 GTGTCTGG---------GCATCTGTATTTAAAAGCCGTGTGGGAGTCACTGG i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276457 43 - 134511895 GTGTCTGG---------GCATCTGTATTTAAAAGCTGTGTGGGAGTCACTGG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 320382 42 - 136387465 GTGTCT-G---------GCATCTGTATTTAAAAGCCGTGTGGGAGTCACTGG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0522276 68 42 - 800 GTGTCT-G---------GCATCTGTATTTAAAAGCCATGTGGGAGTCACTGG i gorGor1.Supercontig_0522276 C 0 C 0 s panTro2.chr12 276826 42 - 135371336 GTGTCT-G---------GCATCTGTATTTAAAAACCATGTGGGAGTCACTGG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 314213 37 + 667635 TTTTCTAG---------GAATTAGTACTGTAGGGA------GGACCTTGTAG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728042 50 + 1032594 GTATTTAGAAGCCTTGTGAGTTGGCAGTTAGGAGA--TCTGGGAGTGTGTAG i oryCun2.chrUn0106 I 138 C 0 s equCab2.chr8 64190033 41 - 94057673 -TTTCTTG---------GCATCAGAGTTTAGGAACC-CGTGGGAATCGGTGA i equCab2.chr8 C 0 I 3 s felCat3.scaffold_2337 1210 41 - 7911 -TTTCTCG---------GCGTTAGTGTTTAGAAGCC-TGTGGGAATCAGTGA i felCat3.scaffold_2337 C 0 I 152 s canFam2.chr26 3239233 38 + 42029645 -TTTTTTG---------GCCTCAGTGGTGAGAAGCC-TGTG---ATGAGGGA i canFam2.chr26 C 0 I 7 s bosTau4.chr17 30023056 38 - 76506943 -TTTCTTG---------GTGACACTG---AGAAACC-TGTGGGAATCGGAGG i bosTau4.chr17 C 0 I 14 e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=129974.000000 s hg19.chrUn_gl000223 152004 120 + 180455 GG--TCCAGTCATCAGTTGGGCCTGTAGGG--ATAACT--CTG--CCTGGCCTGTGAGG-TCTATGGT------------GTGACGTAGGAATGG-------TA-----------AGTGTCTGGGGGCC----------TGTGG---------------AGGATTAGGAATAAAGGGTCCAGTG s papHam1.scaffold36733 8717 131 - 12949 GG--TCCAGTCATCAGTTGGGCCTGTAGGG--ATGACT--CTG--CCTGGCCCATGGGG-TCTATGGT------------GTGACATAGGAATGG-------TAAACGCCAGGTGAGTGTCTGGGGGCC----------TGTGG---------------AGGATTAGGAATAAAAGGTCCAGTG i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276500 131 - 134511895 GG--TCCAGTCATCAGTTGGGCCTGTAGGG--ATGACT--CTG--CCTGGCCCATGGGG-TCTATGGT------------GTGACATAGGAATGG-------TAAACGCCAGGTGAGTGTCTGGGGGCC----------TGTGG---------------AGGATTAGGAATAAAAGGTCCAGTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 320424 120 - 136387465 GG--TCCAGTCATCAGTTGGGCCTGTAGGG--ATGACT--CTG--CCTGGCCTGTGGGG-TCTATGGT------------GTGACGTAGGAATGG-------TA-----------AGTGTCTGGGGGCC----------TGTGG---------------AGGATTAGGAATAAAGGGTCCAGTG i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0522276 110 120 - 800 GG--TCCAGTCATCAGTTGGGCCTGTAGGG--ATGACT--CTG--CCTGGCCTGTGAGG-TCTATGGT------------GTGACGCAGGAATGT-------TA-----------AGTGTCTGGGGGCC----------TGTGG---------------AGGATTAGGAATAAAGGGTCCAGTG i gorGor1.Supercontig_0522276 C 0 C 0 s panTro2.chr12 276868 120 - 135371336 GG--TCCAGTCATCAGTTGGGCCTGTAGGG--ATGACT--CTG--CCTGGCCTGTGAGG-TCTATGGT------------GTGACGTAGGAATGG-------TA-----------AGTGTCTGGGGGCC----------TGTGG---------------AGGATTAGGAATAAAGGGTCCAGTG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 314250 129 + 667635 CT--CCCAG---------AAGACT----GA--GTGACTGACAGCTGCTGTGATATAGGAATGGCTGAT----------------ACTAGGAG----------TG-----------AGTGCCTATGGGCCCTGGGCACTGTGTGGCTAGGCATCCCATGCCATGCCAGGAATGAGGAGTCCTG-G i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728092 156 + 1032594 TTGGTCAAG---------GGGCCTGTAGGG--ATGACTCTCAG--GCTGTGCTGTGGGGCTGTATAATTGAGAGCTTAATATGGCTTAGGAATGGCTAACACTG-----------AGTGTTTGGGGACCCC-AGTAC--TCTGGTTGAGGACCTTGTGCAAGGTAAGGAGTAAAAGGTGCTG-G i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30023108 95 - 76506943 AT--TGTAGTCAACTAAGGGGTCTGTTGGG--ATACCT--GTG--GCT-ATGCGCAGGG--------C----------------------------------TG-----------AGTGAGGGAGAGCC----------TGCTG----------------TGACCAGGAGCAAACGGTTCTGT- i bosTau4.chr17 I 14 C 0 s equCab2.chr8 64190077 97 - 94057673 GT--GATAATCAATCAAGGGGCCTGTAGGG--ATGACT--GTG--GCTCGTGCATGGGA--------C----------------------------------TG-----------AGTAAGGGAGAGCA----------TCGTG----------------TGACCGTAAATAAAGGGTCCTGTG i equCab2.chr8 I 3 I 24 s canFam2.chr26 3239278 99 + 42029645 GT--CATAAGCAGTCAGGGGGCCTCTAGGGTTAGGGTT--AGG--GTTGGTGCATGGGG--------C----------------------------------TG-----------AGCAAGGAAGAGAC----------TGGAA----------------TGATCAGGAGTAAAGAGTCCTGTG i canFam2.chr26 I 7 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=78610.000000 s hg19.chrUn_gl000223 152124 55 + 180455 TACATCGTTGAATGGGGGACAG---------------------TTTTATTGGCTCGTG---CCCTG-GCATTGGCTTTGT s papHam1.scaffold36733 8848 55 - 12949 TGCATCGTTGAATG-GGGATTG---------------------TTTTGTTGGCTCGTG---CCCTGTGCATTGGCTTTGT i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276631 55 - 134511895 TGCATCGTTGAATG-GGGACGG---------------------TTTTGTTGGCTCGTG---CCCTGTGCATTGGCTTTGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 320544 55 - 136387465 TACGTCGTTGAATGGGGGACAG---------------------TTTTATTGGCTTGTG---CCGTG-GCATTGGCTTTGT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0522276 230 55 - 800 TACATCGTTGAATGGGGGACAG---------------------TTTTATTGGCTCGTG---CCCTG-GCATTGGCTTTGT i gorGor1.Supercontig_0522276 C 0 C 0 s panTro2.chr12 276988 55 - 135371336 TACATCGTTGAATGCGGGACAG---------------------TTTTATTGGCTCGTG---CCCTG-GCATTGGCTTTGT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 314379 75 + 667635 AACATCATTGACTAGGGTAGAGGGTTTGGAGAAA--CTTTGGATTGCATTTACTCATA---TCTTGTGGTTGAGTTCTTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728248 75 + 1032594 CACATCACTGACTGGGGGAATGAGTGTGGAGAAA--CTTTGGGTTTAATGGATTCGTG---CCCTGTGGATTGGTTTTGT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30023203 78 - 76506943 --ACTGTCTGATTGGGGATTAAGCTGTGGTGAGAGACTTTGGGATTCATTGATTCACATACTTCTGTGGATTGGTTTTGT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3239377 75 + 42029645 --GATATCTGATTGGGGGCAGGGCTGTGGAGAGA---CTTGGATTTTCCTGACTTGTATACTCCTGTGTGTTGGTTTTGT i canFam2.chr26 C 0 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e equCab2.chr8 64190174 24 - 94057673 I a score=68099.000000 s hg19.chrUn_gl000223 152179 36 + 180455 TATTTGAGGGTGTTGGAACCAGGTGAGAAGGAGCTT s papHam1.scaffold36733 8903 36 - 12949 TATTTGAGGGTGTTGGAACCAGGTGAGAAGGAGCTT i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276686 36 - 134511895 TATTTGAGGGGGTTGGAACCAGGTGAGAAGGAGCTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 320599 36 - 136387465 TATTTGAGGGTGTTGGAACCAGGTGAGAAGGAGCTT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0522276 285 36 - 800 TATTTGAGGGTGTTGGAACCAGGTGAGAAGGAGCTT i gorGor1.Supercontig_0522276 C 0 C 0 s panTro2.chr12 277043 36 - 135371336 TATTTGAGGGTGTTGGAACCAGGTGAGAAGGAGCTT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 314454 28 + 667635 --------GGGGTTGTTGATGAGTAATAAAGACCTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728323 36 + 1032594 TATCCGAGAGGGTTGGAGGTAGATGATAAGGAGCTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30023281 26 - 76506943 ----------CACTGGTTGTTGGTGATTGGGAGCTT i bosTau4.chr17 C 0 I 53 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=291169.000000 s hg19.chrUn_gl000223 152215 205 + 180455 GTTTGTATTAGTGACCGGGTACCAGAGATGACTGAATGACTGATGGGGTGGGCAGTGAG-GTCTGTGAGGAGGAATGATCGGAGG---------------GCTT----GGGATCAATGCCAAGTATGCGTGCAAGTGTCTGTGATGGGTGTGCGGGTGGGTGAG---GGTGAGAAATTGGGGACCCTGTGGGTGTCAG--------TGAGAGGGAAGCCTGGGGAGCCTAAGAGTT s papHam1.scaffold36733 8939 219 - 12949 GTTTGTATCAGTGACCGGGTACCAGAGATGACTGAAGGACTGATGGGGTGGGCAGTGAA-GTCTGTGAGGAGGAATGATTGGAGGGCTTGGGAGTTTGATGTTT----GGGATGAATGCCAAGCATGCATGCAAGTGTCTGTGATTGATGTGTGGGTGGGTGAG---GGTGAGAAATTGGGGACCCTGTGGGTGTCAG--------TGAGAGGGAAGCCT-GGGAGCATAATGGTT i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 276722 220 - 134511895 GTTTGTATCAGTGACCGGGTACCAGAGATGACTGAAGGACTGATGGGGTGGGCAGTGAG-GTCTGTGAGGAGGAATGATCGGAGGGCTTGGGAGTTTGATGTTT----GGGATGAATGCCAAGCATGCATGCAAGTGTCTGTGATTGATGTGTGGGTGGGTGAG---GGCGAGAAATTGGGGACCCCGTGGGTGTCAG--------TGAGAGGGAAGCCTGGGGAGCATAATGGTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 320635 219 - 136387465 GTTTGTATTAGTGCCC-AGTACCAGAGATGACTGAATGATTGATGGGGTGGGCAGTGAG-GTCTGTGAGGTGGAATGATCGGTGGGCTTGGGAGTTTGATGTTT----GGGATGAATGCCAAGTATGCGTGCAAGTGTCTGTGATTGGTGTGCGGGTGAGTGAG---GGCAAGAAATTGGGGACCCTGTGGGTGTCAG--------TGAGAGGGAAGCCTGGGGAGCCTAATAGTT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0522276 321 220 - 800 GTTTGTATTAGTGACCGGGTACCAGAGATGACTGAGTCACTGATGGGGTGGGCAGTGAG-GTCTGTGAGGAGGGATGATCGGAGGTCTTGGGAGTTTGATGTTT----GGGATGAATGCCAAGTATGCGTGCAAGTGTCTGTGATTGGTGTGCGGGTGGGTGAG---GGCGAGAAATTGGGGACCCTGTGGGTGTCAG--------TGAGAGGGAAGCCTGGGGAGCCTAATAGTT i gorGor1.Supercontig_0522276 C 0 C 0 s panTro2.chr12 277079 204 - 135371336 GTTTGTATTAGTGACCGGGTACCAGAGATGACTGAATGACTGATGGGGTGGGCAGTGAG-GTCTGTGAGGAGGAATGATC-GAGG---------------GCTT----GGGATCAATGCCAAGTATGCGTGCAAGTGTCTGTGACTGGTGTGCGGGTGGGTGAG---GGCGAGAAATTGGGAACCCTGTGGGTGTCAG--------TGAGAGGGAAGCCTGGGGAGCCTAATAGTT i panTro2.chr12 C 0 I 1771 s cavPor3.scaffold_248 314482 220 + 667635 GTTTATATTAGTGAC---------AAGAGCACTGGAG-GGTAATTGGGTGAGTAACCAGGGTCTGTGAGGAGAAATGGTTGGAGGGCTTTGATGTTTGAGGACTCCATGGGGTGAATGACTGGTATTTCTGTACATGCATATGATGGTT------TACGGTGAGTATGGTGAGAAATTGAGGGTTCTGTGGGTGTTTGTGAACAGGTGAGCAGGAAGTCTAAAGAGTTCAGTGACT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728359 142 + 1032594 GTTTATCTT------------------AGCAATGAAGAGATGATTAGATGGGTGAGTCG-------AAAGAGAAATGAT--------------------GGATTTGTGGGGATGGATGATT-GCATGCCTGTGGGTGC-TGTGATTCGT------GTGTGTGAG---GGTGAAAAGTTGGGGAACCTGTGggggccag-------------------------------------- i oryCun2.chrUn0106 C 0 I 398 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e bosTau4.chr17 30023307 53 - 76506943 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=40162.000000 s hg19.chrUn_gl000223 152420 59 + 180455 TGTTTGCCATTTGCGGTGAATGTGGAGTTAGAAGTTAGTGGCCTTAgctgggcaccgtg s gorGor1.Supercontig_0522276 541 59 - 800 TGTTTGCCATTTGCGGTGAATGTGGAGTTAGAAGTTAGTGGCCTTagctgggcaccgtg i gorGor1.Supercontig_0522276 C 0 C 0 s ponAbe2.chr12 320854 59 - 136387465 TGTTTGCCATTTGCAGTGAATGTAGAGTTAGAAGTTAGTGGCCTTagctgggcaccgtg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 276942 59 - 134511895 TCTTTGCCATTTGCGGTGAATGTGGAGTTCGAAGTTAGTGGCCTTggccgggtgtggtg i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 9158 54 - 12949 TCTTTGCCATTTGCGGTGAATGTGGAGTTCGAAGTTAGTGGCCTT-----ggcgcggtg i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 314702 20 + 667635 TGTTTGCCACGAGCACTGGG--------------------------------------- i cavPor3.scaffold_248 C 0 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e oryCun2.chrUn0106 728501 398 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e bosTau4.chr17 30023307 53 - 76506943 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=166816.000000 s hg19.chrUn_gl000223 152479 200 + 180455 gctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcaggaggtcaagagatccacaccatcctggccaacatggtgaaaccccgtctctactaaaaatac-aaaaattagctgggcatggtggtgggcgcctgtaatcccacctactcaggaggctgaggcaggagaattgcttgaacccaggaggcag s gorGor1.Supercontig_0522276 600 200 - 800 cctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcaggaggtcaagagatccagaccatcctggccaacatggtgaaaccccgtctctactaaaaatac-aaaaattagccgggcatggtggtgggcgcctgtaatcccacctactcaggaggctgaggcaggagaattgcttgaacccaggaggcag i gorGor1.Supercontig_0522276 C 0 N 0 s ponAbe2.chr12 320913 201 - 136387465 gctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaagagatccagaccatcctggccaacatggtgaaaccccgtctctactaaaaatttaaaaaattagctgggcatggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaaccgaggaggcag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 277001 200 - 134511895 gctcacgcctgtaatcccaacactttgggaggccgaggcaggcagatcacaaggtcaagagatccagaccatcctggccaacatggtgaaaccccgtctctcctaaaaatac-aaaaattagctgggagtggtggtgggcacctgtagtcccagctactcaggaggctgaggcacaagactggcttgaacccgggaggtgg i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 9212 200 - 12949 gctcacgcctgtaatcccaacactttgggaggccaaggctggcagatcacgaggtcaagagatccagaccatcctggccaacacggtgaaaccccgtctctactaaaaatac-aaaaattagctgggagtggtggtgggcacttgtagtcccagctactcaggaggctgaggcaggagagttgcttgaacccgggaggtgg i papHam1.scaffold36733 C 0 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e oryCun2.chrUn0106 728501 398 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e cavPor3.scaffold_248 314722 0 + 667635 C e bosTau4.chr17 30023307 53 - 76506943 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=20585.000000 s hg19.chrUn_gl000223 152679 40 + 180455 aggttgcagtgaaccgagattttgccactgcactccagcc s papHam1.scaffold36733 9412 40 - 12949 aggttgcagtgaaccgacattgcgccactgcattccagcc i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 277201 40 - 134511895 aggttgcagtgaaccgacattgcgccactgcactccagcc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 321114 40 - 136387465 aggttgcagtgaaccgagatttcgccactgcactccagcc i ponAbe2.chr12 C 0 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e oryCun2.chrUn0106 728501 398 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e cavPor3.scaffold_248 314722 0 + 667635 C e bosTau4.chr17 30023307 53 - 76506943 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=12984.000000 s hg19.chrUn_gl000223 152719 31 + 180455 tgatgacagagtgagactccatcttaaaaaa s ponAbe2.chr12 321154 31 - 136387465 tgacgacagagtgagactccgtcttaaaaaa i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 277241 30 - 134511895 tggtgacagagtgagactccatcttaaaaa- i rheMac2.chr11 C 0 I 315 s papHam1.scaffold36733 9452 31 - 12949 tggtgacagagcaagactccatcttaaaaaa i papHam1.scaffold36733 C 0 I 567 s cavPor3.scaffold_248 314722 16 + 667635 TGATTGTGGAGTTAGA--------------- i cavPor3.scaffold_248 C 0 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e oryCun2.chrUn0106 728501 398 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e bosTau4.chr17 30023307 53 - 76506943 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=29614.000000 s hg19.chrUn_gl000223 152750 56 + 180455 gataataa---------taaGTTAGTGGCCTTTGGGTATCTGTGATTAGTGGTCT--------ATACTGTGCC s oryCun2.chrUn0106 728899 47 + 1032594 --------------------GTTGGTGCCCTTGGGGTGCTCGTA------GCTTCTGGGGCCAATACTGGGAA i oryCun2.chrUn0106 I 398 C 0 s cavPor3.scaffold_248 314738 54 + 667635 -------------------AGTCAGTGGTCTCTGGGCGTCTGTGCTGAGTGGTGTGGGGGCCAATATTGTGCA i cavPor3.scaffold_248 C 0 C 0 s papHam1.scaffold36733 10050 59 - 12949 --------------TATTAAGTTAGTGGCCTTTGGATATCTGTGATTAGTTGTCTGGGAGCCAATACTGTGCC i papHam1.scaffold36733 I 567 C 0 s ponAbe2.chr12 321185 56 - 136387465 GATAATAA---------TAAGTTAGTGGCCTTTGGGTATCTGTGATTAGGGGTCT--------ATACCGTGCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 277586 73 - 134511895 aataataataataatattaaGTTAGTGGCCTTTGGATATCTGTGATTAGTTGTCTGGGAGCCAATATTGTGCC i rheMac2.chr11 I 315 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e bosTau4.chr17 30023307 53 - 76506943 I e equCab2.chr8 64190174 24 - 94057673 I e canFam2.chr26 3239452 0 + 42029645 C a score=40279.000000 s hg19.chrUn_gl000223 152806 47 + 180455 AGTCTGTGGAGTCTGTGG--TCAGGTGTTTCTGGAGGCTGTTG---TGGGGC- s rheMac2.chr11 277659 47 - 134511895 AGTCTGTGGAGTCAGTGG--TCAGGTGTTTCTGGAGGCTGTTG---TGGGGT- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 321241 47 - 136387465 AGTCTGTGAAGTCAGTGG--TCAGGTGTTTCTGGAGGCTGTTG---TGGGGC- i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 10109 47 - 12949 AGTCTGTGGAGTCAGTGG--TTAGGTGTTTCTGGAGGCTGTTG---TGGGGC- i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 314792 49 + 667635 GCTCTGTGGAGTCCGTGG--TTGAGTGTTTCTGGAGGCTGGTCAT-TGTAGT- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728946 50 + 1032594 GGTGATAAGAGTCCGGAG--TTGTGTGTTTCTGGAGGCTGGTGATGTAAGGC- i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64190198 49 - 94057673 AGACTTTGGGTTTCGTTGACTCGTGTGCTCCTGTAGATTGGT----TTTGTCA i equCab2.chr8 I 24 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e bosTau4.chr17 30023307 53 - 76506943 I e canFam2.chr26 3239452 0 + 42029645 C a score=123297.000000 s hg19.chrUn_gl000223 152853 161 + 180455 CACT-AGAGTTACCGCCTGGGGTCTTTGTTGGA-TGGTCACTGGGGAACCCATAGTGTGTGTCTCTGAAGGCCCTGGAGGGGCGGCCTCTTGGGGAGAGAGACTGGGTGGCCTGTGAAGTCAGCCATTGTGGTCCTGTGGGAGTGATGGGGGCACATGGGGTG s rheMac2.chr11 277706 156 - 134511895 CACT-AGAGTTACCACCTGGGGGCTTTGT-----TGATCACTGGGGAACCCATAGCATGTGTCACTGAAAGCCCTGGAGAAGCGGCCTCTTGGGGAGAGAGACTGGGTGGCCTGTGAAGTCAGCCGTTGTGGTTCTGTGGGAGTGATAGGGGCACAT-GAGTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 321288 161 - 136387465 CACT-AGAGTTACTGCCTGGGGGCTTTGTTGGA-TGGTCACTGGGGAACCCATAGTGTGTGTCACTGAAGGCCCTGGAGGGGCGGCCTCTCGGGGAGAGAGACTGGGTGGGCTGTGAAGTCAGCTGTTGTGGTCCTGTGGGACTGATGGGGGCACATGGGGTG i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 10156 156 - 12949 CACT-AGAGTTACCACCTGGGGGCTTTGT-----TGATCACTGGGGAAACCATAGCATGTGTCACTGAAAGCTCTGGAGGAGCGGCCTCTCAGGGAGAGATACTGGGTGGCCTGTGAAGTCGGCCGTTGTGGTTCTGTGGAAGTGATGGGGGCACAT-GGGTG i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 314841 157 + 667635 CACTGCAAGTCAGAACCTG-AGTCTCTGCCATA-TAGTCATTGGGGAACCTACAGTGTGTGTCCCCGAAGGCTCTGGAGGGGTGGCCTGTTGAGGAGA---GTCTAGGGGCCTGTATAGTCATTATCTGTGGTTCTGTGAGGATAATGGGGGCACAT-ATGGT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 728996 114 + 1032594 AACTGAGAGTCAGCTGCTGTGGGCTTTGCCAGC------------------------TGTGTTGGTGAAGGCATCG--AGGGTGGCCTGTTGGGGACAG--GTTGAGTGGTCTATGCA--------------------GGGGGTGATGGGGGCACAC-GGGTA i oryCun2.chrUn0106 C 0 C 0 s equCab2.chr8 64190247 134 - 94057673 CTTG-GGGGCTGCCTCTTGGAGGCTTTGCTAGAGGAATTATTGGGGATCC-ACAGCATGTGCGATTGAAGGTCCTGGAGGGATGGC-------------------------CTGTGAAATCAATAATCAGGGTTCTGGGAAGGTGAT--AGGCATGTAGGGTA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3239452 125 + 42029645 CACT-CGGGTTG---ATAGGGGGCTTTGCTGAAAGAGTCACTGGGGATAT----GTATGTGTAA---GAGGTCCTGGAGGCACAGC-------------------------CTGTAAAACCGGAAGCTGGGGTCCTGGTGGGATGAT--GGGCAAGTGGGGGA i canFam2.chr26 C 0 C 0 e felCat3.scaffold_2337 1251 152 - 7911 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e bosTau4.chr17 30023307 53 - 76506943 I a score=69361.000000 s hg19.chrUn_gl000223 153014 39 + 180455 AGTGAGAGTGGGGTTGATGGGGTTCGGTGGTTGTGT-GGT s rheMac2.chr11 277862 39 - 134511895 AGTGGGAGTGGAGTTTATGGGGTTCCGTGGTTGTGT-GGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 321449 39 - 136387465 AGTGAGAGTGGAGTTGATGGGGTTCGGTGGTTGTGT-GGT i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 10312 39 - 12949 AGTGGGAGTGGAGTTTATGGGGTTCCGTGGTTGTGT-GGT i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 314998 37 + 667635 GGGTGAAGT--AGTGTATGGGGCTCAGTGGTCATGT-GAT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 729110 38 + 1032594 AGGGGTAGTAGAGTTTATAGGATTCAATAATT-TGT-GGT i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3239577 40 + 42029645 AGTGATAGTGGGGCTTGTGATGCTCAGTGGCTGTGTAGAT i canFam2.chr26 C 0 C 0 s felCat3.scaffold_2337 1403 39 - 7911 AGTGGGAGTGGGGCTTATGGGGCTCAGTGGTTGTGC-GGT i felCat3.scaffold_2337 I 152 C 0 s equCab2.chr8 64190381 38 - 94057673 AGTGATAATGGGGTTTGTGGGTCTCGGTGGTT-TGT-TGT i equCab2.chr8 C 0 C 0 e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e bosTau4.chr17 30023307 53 - 76506943 I a score=56327.000000 s hg19.chrUn_gl000223 153053 68 + 180455 CTGGAG----------GTCTGTGAAGCAGGCC-TA--TTGGATTCAGTGATCTGGGGATGTCTTGGGATGTGGACCTGGAG s rheMac2.chr11 277901 65 - 134511895 CCG-------------GTCTGTGAAGCAGGCC-TG--TTGGATTCAGTGATCTGGGGACATCTTGGGATGTGGAGCTGGAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 321488 68 - 136387465 CTGGAA----------GTCTGTGAAGCAGGCC-TA--TTGGATTTAGTGATCTGTTGACGTCTTGGGATGTGGACCTGGAG i ponAbe2.chr12 C 0 C 0 s papHam1.scaffold36733 10351 68 - 12949 CCGGAG----------GTCTGTGAAGCAGGCC-TG--TTGGATCCAGTGATCTGGGGACATCTTGGGATGTGGAGCTGGAG i papHam1.scaffold36733 C 0 C 0 s cavPor3.scaffold_248 315035 67 + 667635 CAGGAG----------GTTTGTG-AAGAGGCC-AG--TTGAGTTTAGTGACCTGGAAAGGTCCTGGGATGTGGAACTGGAG i cavPor3.scaffold_248 C 0 I 546 s oryCun2.chrUn0106 729148 50 + 1032594 CAGGAG----------ATTTGAGAAAGAGGCC-TG--TTGGGTGT------------------TGAGATGTGGCGCTAGAG i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30023360 59 - 76506943 -CTGGAGGGATGGTGGACACGTGAGG--GTCAGTGGTTTGTGTTCAGTTA--TT-----------------GGGGCTGGGG i bosTau4.chr17 I 53 C 0 s equCab2.chr8 64190419 48 - 94057673 -CTGGA----------GTTTGTGCAG--GGCT-TG--TTGTGTTCAGTGATCTA-----------------GGGGCTGGAG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 1442 48 - 7911 -CCGAA----------ATTTGTGAGG--TCCC-TG--TTGTGTTCAGTGAAATG-----------------GGGGCTGGAG i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3239617 48 + 42029645 -TGGAG----------ACTCATGACG--GCTC-TG--TTGTGTTCAGTGAGCAA-----------------GGGCCTGGAG i canFam2.chr26 C 0 C 0 e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I a score=41376.000000 s hg19.chrUn_gl000223 153121 29 + 180455 AATTCTCAGGTGGTCAC--------TGTGAGTGACTG s rheMac2.chr11 277966 29 - 134511895 AATTCTCAGGTGGTCAC--------TGTGAGTGACTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 321556 27 - 136387465 AATTCTCAGGTGGTCAC--------TGTGAGTGAC-- i ponAbe2.chr12 C 0 M 2697 s papHam1.scaffold36733 10419 29 - 12949 AATTCTCAGGTGGTCAC--------TGTGAGTGACTG i papHam1.scaffold36733 C 0 C 0 s oryCun2.chrUn0106 729198 37 + 1032594 CATTTTCATGTGGTTGCTGATTGCTTGTGACTGACTG i oryCun2.chrUn0106 C 0 I 563 s bosTau4.chr17 30023419 17 - 76506943 AATTCTCAGGTGGTCAG-------------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64190467 29 - 94057673 ACTTCTCAGGTGGTCAT--------TGTGGGTGACTG i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 1490 28 - 7911 AACTCTCAGGTGGGTGG---------GTGGGGAACTG i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3239665 29 + 42029645 AAGTCTCAGGCAGTCAG--------TGTGGGTACACG i canFam2.chr26 C 0 C 0 e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=219481.000000 s hg19.chrUn_gl000223 153150 573 + 180455 GGGGACTT-GGGATGCTGGAGGTTGGCAGGG-GCTTGGAGCTG--------------CGGAGTTCAGTGGTTTGT-----GTCTGGGGT---GTGTGTG--TGATGGAGGCCCTCTCTGGGAC-----TTGGTAATCCGGGGAACTTGGCAGGGCCGTGTTGGTGGGTCTGGAAGCAGATCCGAATGTGAATGGGTCGTGGGTTGGCTCAGGCAAGCCTCTCGTGA-GTGAC---------------AGGTCTT--TTTGCCCTTTGGCCCTCTCCTTGTAGCTTGT----GACC--GCTGATCAGTGATCACTCTTTTTACGTGATTATTTCCTT-TTTTAAAAGTTCTCAGtgaccccgttggccttaaggtcttctccttgtagaatttcccccttgctgtttgtacctcctaggcctcttccatccctcctgatgacc----------tccggctcccccacccaagacctttgcatctgaggtgcctggagtggtgtggtcggcc--cagccttccgtggcggactgct---cctgcttcaggctcagctaaaagcc----acctcctcccacaagcctctacgacgtctg--ggaggaatatcttctgcccattcatcccttggtcacagttaaaatttcc--ttt-- s rheMac2.chr11 277995 557 - 134511895 GGGGACTT-GGGACGCTGGAGGTTGGCATGT-GCTTGTGGCTG--------------CGGAGTTCATTAGTTCGT-----GTCTGGGGT---GTGTGTGTATGATTGAGGCCCTCTCTGGGAC-----TTGGTAATCCAGGG-GCCTGGGAAGTCCGTGTTGGTGGGTCTGGAAGCAGATCCGAGTGCGTAT-GGTTGTG-------------AAGCCTCTCGTGT-GTGAC---------------AAGTCTT--TTTGCCCTTTGGCCCTCTCCTTGTAGCATGG----GACC--GTTGATCAGTGACTACTCTTTTTACGTGATTATTTCC-T-TTTTAAAAGTTCTCAGTGAccctgttggctttcaggtcttctccttgtagaattttccccttgctgtttgtacctcctgggcctcttccatccctcctgatgacc----------tctggctcctccgcccaagacctttgcatctgaggtgcctggagtggtatggtcggcc--cagccttcggtggtaggctcct---cctgcttcaggctcagctaaaagcc----acctcctcccacaagcctctccgacgtctg--ggaggaatgtcttctgtccatccgtcactaggtcacagttaaaatttcc----c-- i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 10448 561 - 12949 GGGGACTT-GGGACGCTGGAGGTTGGCATGG-GCTTGTGGCTG--------------CGGAGTTCAGTGGTTCGT-----GTCTGGGGT---GTGTGTGTGTGATTGAGGCCCTCTCTGGGAC-----TTGGTAATCCAGGG-GCCTGGGAGGGCCATGTTGGTGGGTCTGGAAGCAGATCCGAGTGCGTAT-GGTTGTG-------------AAGCCTCTCGTGT-GTGAC---------------AAGTCTT--TTTGCCCTTTGACCCTCTCCTTGTAGCATGG----GACC--GTTGATCAGTGACTACTCTTTTTACGTGATTATTTCC-T-TTTTAAAAGTTCTCAGtgaccccgttggctttcaggtcttctccttgtagaattttccccttgctggttgtacctcctgggcctcttccatccctcctgatgacc----------tctggctcctccgcccaagacctttgcatctgaggtgcctggagtggtatggtcggcc--cagccctcggtggtaggctcct---cctgcttcaggctcagctaaaagcc----acctcctcccacaagcctctcccacgtctg--ggaggaatgtcttctgtccatccatcactaggtcacagttaaaatttccctttt-- i papHam1.scaffold36733 C 0 C 0 s bosTau4.chr17 30023436 421 - 76506943 ----------------------TTAGTGT---GATTGAGGTGG---------------------------TCTTTGGAACGTGTGTTTTAGGGGCTGTGGGTG-------------------------TTGGTGATTGCAGG-GCCTGTGAGCGTGGTGTTTTGGGGTTTGG--ATGGAT----------------CATGTGTGGGCTCAGGCAAGACTCTCAGATTGTGACCTCTGTTCAATAACTATGTTGTCTTTTGTTCTTTAGCCCCTCTCATCCAGCACCTGTGTGGCCTTGTTGGTAAGTGATGGCTCCTTTTACTTGAATGTTTTC-T--------------------------------TAAGAATTCTCAGTGA-------------------------CCCCATTGAC---------------------------------TCTGAATCC--------TCCCACTTGTGTCTGATGCACCTACATGGGTGTGGTTGGCCTATGGCCTTCCAAAGGGGGCTCCA---CCTCCTCAGGGCTCAGCTAAGAGTC----A---TCTCCAAG------------------------GAGTATCCTCCATGTACCCACTTGTCTGTCACATTTGAAGTTTCT----TCT i bosTau4.chr17 C 0 I 170 s equCab2.chr8 64190496 580 - 94057673 GGGGCTTTGAGGGTCCTGAGGGTTGGTGCATGGGCTGGGATGGTATATGGATTGGCACAGTGTGGTTTGGTCATTTCAAGGTCCGTGGGG--GTTTGTGTGTG-CTGAGGCCGTCTTTGGGACCTCTGTTGGTGATTGTGGG-ACCTATGAGGGTGGTGTTTGCAGGTTTGG--GTGGCTGTGAGTGAGTGTTGGTCGTGTGTTAGCTCAGGCAGGACTCTCAAGTAGTGACTTCTGTGACACAGCCACGTTCT----------TCGACCACTCTCACCCAGCACGT-----GCTTTGTTGGTCAGTGACGGCTCCTTGTACTTGAATCTTTCC-TTGTTTAGGAGTTCTCAGCAGCCCCATTGGCTGTAAGGTCCTCCGCCTG---------------GCTTGTTGAACCTCATCGCCTGTCTC--TCCCTGC--ACCACC----------TCCAGCTCC--------AGCCGGTTGTGGCTGAGGCTTCTTGGCAGGCGTGGTCTTCCTGCAG--TTCCACAGCGGGCTCCTTCTCCTCTTCA--CCTCAGCTAAAAGTC----G---TCTCCAAGAGGGCGCCTCTGGCTGTGCTGAAGGAGCATCTTTCATTCACCCCTTCCTCTGTCACATTTAAAACTTAT----TCT i equCab2.chr8 C 0 I 1013 s felCat3.scaffold_2337 1518 542 - 7911 GGAGCCTTGTGAATGCTGAAGGTTGGTCCGTGGGGTGGGGTGG--------------CTGGGGG-TTCAGTC-ATGCAAGGTCTGTTGGA--CCTCGTGTGTGATTGAGGCCATCT------------TTGGTGATTA-TGG-GCCTGTG-TGGTTGTGTTTGTGGGTGTGG--GTAGTC-TCAATGAGTGCTGACCATGCGTTGGCTCAGGCAAGACTCCCACAGAGTGACTTCTGTTAAATGACCATATTCTCTTTTGTTCTTTGGTCTTTCTCACCCAACACAT----CACTTTGTTGGTCAGTGACGGCTCCTTTTACCGAAATATTTCC-T--------------------CCCT--------TAAGCGTT----CTCA---------------Gctggttcagcctcattgccctcctctatccccga--accgccttcagctctctctagctcc--------agccgtttgagtgtggtgctccctgatgggcatgctcttcccacaggcgtccacagtgggttccatcctctgttcaggactcagctaaaagtc----a---tttccaggatgccttttctggccgtg-ggaaggagcaccctccacccaccccttcctctgtcacgtttaaaatttcc----t-- i felCat3.scaffold_2337 C 0 I 176 s canFam2.chr26 3239694 517 + 42029645 GGAGCCTC-TGAGAGCTGAAGTTCCGTCCAT-GGCTGAGGTGG--------------CAGGGGGTTTCAGTCTATTCCAGATCTGGTGGAGGGGCTGTGTGGGACTGAGACCATCT------------TTGGTGAT---AGG-ACATG----AATTGTGTTTGTGGGTTTGG--GTGGT-----------------CATGCATTGACTCAGGCAAGACTCTGATGTAGTGACTTCTGTTGAATGACTATATTCTTTTTTGTTC-TTGGTCCTTCTCACTTAGCACAT----TACATTGTTGGTCTGTGACAGCTCCTTATTTC--AGTGTTCTC-T----------------GTGACCCTGGTGGCTGTAGGTCCTAC--CCCA--------------TGCTGGCTCAgcctccttgcccttctccatccctg-------------------tctagctcc--------agccctctgagtgtggtgctcctttgtgggcttgatccttccacagccttccccagtgggttcctacctctcttctgggctcagctaaaagtccttga---tttccaggaggccttttccaactgtg-tgagagagtatcctctatccatccatcccactgtcgtatttaaaat----------- i canFam2.chr26 C 0 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e ponAbe2.chr12 321583 2697 - 136387465 M e cavPor3.scaffold_248 315102 546 + 667635 I a score=35030.000000 s hg19.chrUn_gl000223 153723 139 + 180455 ttttttttttttttttgagacagag----------tcgcccatgcttgagtgcagtggcgtgatctcagctcactgcaacctccatctcctgggttccagtgattcttccgcctcaacgcccccagtagctgggattacaggtgcccgc s rheMac2.chr11 278552 149 - 134511895 ttttttttttttttttgagacagagtctcgctacttcgcccatgctggagtgcagtggcgtgatctcagctcactgcaacctccatctcccgggttccagtgattcttctgcctcagccccctgagtagttgggattacaggcgtccgc i rheMac2.chr11 C 0 C 0 s papHam1.scaffold36733 11009 149 - 12949 tttttttttgttttttgagacagagtctcgctacttcgcccatgctggagtgcagtggcgtgatctcagctcactgcaacctccatctcccgggttccagtgattcttctgcctcagccccctgaatatttgggattacaggcgcccac i papHam1.scaffold36733 C 0 C 0 e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 277283 1771 - 135371336 I e ponAbe2.chr12 321583 2697 - 136387465 M e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I e canFam2.chr26 3240211 0 + 42029645 C a score=79449.000000 s hg19.chrUn_gl000223 153862 164 + 180455 caccatgcccggctaattttttgtatttttagtaaagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatctgcctaccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcccacagttaaaa s papHam1.scaffold36733 11158 164 - 12949 caccatgcccagctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacttcaagtgatctgtccaccgcctcagcctcccaaagtgctgggattataggtgtgagccaccgcgtccggcccacagttaaaa i papHam1.scaffold36733 C 0 C 0 s rheMac2.chr11 278701 164 - 134511895 caccatgcccagctaattttttgtatttttagtaaagatgggatttcaccatgttggccaggctggtctcgaactcctgacttcaagtaatctgcctactgcctcagcctcccaaagtgctgggattataggcgtgagccaccgcgtccggcccacagttaaaa i rheMac2.chr11 C 0 C 0 s panTro2.chr12 279054 164 - 135371336 caccatgcctaggtatttttttttatttttattaaagatgggttttcaccatgttggccagggtggtcttgaactcgggacctctattgatgtgcctaccgcctcggcctcccaaattgccgggattacaggcatgagccaccgcgcctggccCACAGTTAAAA i panTro2.chr12 I 1771 C 0 e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 321583 2697 - 136387465 M e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I e canFam2.chr26 3240211 0 + 42029645 C a score=114625.000000 s hg19.chrUn_gl000223 154026 175 + 180455 tttcttctgagcg--ctcacagtcagaaa-tcatttatttacttggct--------------gtttccctagagggcagagacaccgtacatcttgttgagtggtctttcccgtgtgctcagaacagtgcctggtgtgtaataggaattcagcaaa-tgctgctttcgtagcgagtaaatgaGACTGtgtgtg s panTro2.chr12 279218 175 - 135371336 TTTCTTCTGAGCG--CTCACAGTCAGAAA-TCATTTATTTACTTGGCT--------------GTTTCCCTAgagggcagagacaccgtacatcttgttgagtggtctttcccgtgttctcagaacagtgcctggtgtgtaataggaaatcagcaaa-tGCTGCTTTCCTAGCGGGTAAATGAGACtgtgtgtg i panTro2.chr12 C 0 C 0 s rheMac2.chr11 278865 175 - 134511895 tttcttctgagcg--ctcacagtcagaaa-tcatttatttacttggct--------------gtttccctggagggcaaagacgccgtacatcttgttgagtggtcttttccacgtgtgcagagcagtgcctggtgtgtaataagaattcagcaaa-tgctGCTTTCCTAGCGGGTAAATGAGACtgtgtgtg i rheMac2.chr11 C 0 I 2950 s papHam1.scaffold36733 11322 175 - 12949 tttcttctgagcg--ctcacagtcagaaa-tcatttatttacttggct--------------gtttccctggagggcaaagacgccgtacatcctgttgagtggtctttcccatgggtgcagagcggtgcctggtgtgtaataagaattcagcaaa-tgctGCTTTCCTAGCGGGTAAATGAGACtgtgtgtg i papHam1.scaffold36733 C 0 N 0 s canFam2.chr26 3240211 182 + 42029645 ttttttccaagcactctcacagtctgaaattcttttatttgcttgtttcctatcttagaatgtctttcttagagagcagggaccctgtctgtcttgttcagtggtctctcccatgtgttcagaaca--gcctgcta-gtaagaggtgttcagcaaatTGATGCTTTCCTGGTCAGTAGATGAGAC-------- i canFam2.chr26 C 0 C 0 e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 321583 2697 - 136387465 M e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I a score=76163.000000 s hg19.chrUn_gl000223 154201 1029 + 180455 tgtgatgtgtgtgaacgtgtgtgtatgtgatgtatgtac-------------------gtgtgtgggaatgtgtattgtgtgatgtacgtatgtgtttgaatgtgtgtgatgtgtgtatgagtgtgtatgtgtgtatgagtgtgagtata-gtgtgtgatgtatgcgtgtatgtgtatgtgtggtgtatgtgtatgtgtgtgatgtgtgATGTACATGTGTATCAAtgtgtgtgtacttgtctgtgtgatgtgtgttgtacatgtgtatgtgtcatgtatgtatcattgtgtgtgcatgtgtggtgtacgtgtatatc--tgagtttgtgcatgtctgtgtatgtTATGTGGGATGTACGTGTGCATCAGTGT----ATCTGTACGTGTCTGTGATACGAACgtgtgtatctgtgtctgagtgtgtgcatgtctgtgtgtatggtatacgtgtgcatcagtgtgtgtatgtgtgtgtgtgacgtacgtgtacatcagtgtgtgtgtacgtgt--gtgtgtatatgtgatgtatgtatgaatctgcgtg--catgtctgagtgtgtatatgtatgAGATACGTATCTGTGGGTGTACGTGTCTGTGAGtgtgtgtgatgtacgtatctgtgtgtacgtatatgtgtgatgtacgtgtgtatctgtgtgtacgtgtctgtgtgtgtgatgtacgtgtgtatcagtgtgtgcatgtctgtgtacgtgtctgtgtgtac--gtgtatctgtgtgt------gatgtacatgtgcgtctgtatgtacgtgtctgagtgtatgtgtgATGTACATGTGTATCAgtgtgtctgagtgtgtgtgcatgtctgtgtgtacgt--ctgtgtatacgttatgtaccagtgtgtgt--------gtatgcgtgatgtacttgtgtatcagtgtgtctgtac--gtctgtgagtatgcgtgatgtacgtatcagtgtgtgtacatgtctgtgtatgatgtatctgt--gtgtacatgtctgtgATGTACGTGTTATCAGTATGTCTGTACATGTCTGCGTGTGATGTACATGTGTATCAgtgtgtctgagtgtg s panTro2.chr12 279393 1042 - 135371336 tgtgatgtgtgtgaacgtgtgtgtatgtgatgtatgtacatgtgtgaaaatgtgaggcgtgtgtgggaatgtgtattgtgtgatgtacgtatgtgtttgaatgtgtgtgatgtgtgtatgagtgtgt--gtgtgtatgagtgtgagtatatgtgtgtgatgtatgcgtgtatgtgtatgtgtg-tg---gtgtatgtgtg--Atgcgtgatgtacatgtgtatcaatgtgtgtgtacttgtctgtgtgatgtgt--tgtacatgtgtatgt--catgtatgtatcattgtgtgtgcatgtgtgatgtacgtgtatatcagtgagtttgtgcatgtctgtgt----tatgtgggatgtacgtgtgcatcagtgtgtgtatctgtacgtgtctgtgatacgaacgtgtgtatctgt--ctgagtgtgtgcgtgtctgtgtgtatggtatacgtgtgcatcagtgtgtgtatgtgtgtgtg--acgtacgtgtacatcggtgtgtgtgtacgtgtctgtgtgtatat-tgagatatgtatgcatctgtgtgtgcatgtctgagtgtgtatatgtatga--tacgtatctgtg--tgtacatgtctgtg--tgtctgtgatgtacgtatctgtgtgtacgtatatgtgtgatgtacatgtgtatctgtgtgtacgtgtctgtgtg----atgtacgtgtgtatcagtgtgtgcat-tctgtgtacgtgtctgtgtgtacatgtgtatctgtgtgtatgtgtgATGTACATCTGCGTCtgtatgtacgtgtctgagtgtatgtgtgatgtacatgtgtatcagtgtgtctgagtgtgtgtgcatgtctgtgtctatgtgtctgtgtatacgttacgtaccagtgtgtgtctgtgagtgtatgcgtgatgtacttgtgtatcagtgtgtctgtacatgtctgtgagtatgtgtgATGTA----TCAGTGTGT-TACATGTCTGTGTATGATGTATGTATCTGTGTACATGTCTGTGATGT--GTGTTATCAGTATGTCTGTACATGTCtgtgtgtgatgtacatgtgtatcagtgtgtctgagtgtg i panTro2.chr12 C 0 I 74 e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 321583 2697 - 136387465 M e rheMac2.chr11 279040 2950 - 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I e canFam2.chr26 3240393 0 + 42029645 C a score=0.000000 s hg19.chrUn_gl000223 155230 4 + 180455 tgtg e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 280435 74 - 135371336 I e ponAbe2.chr12 321583 2697 - 136387465 M e rheMac2.chr11 279040 2950 - 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I e canFam2.chr26 3240393 0 + 42029645 C a score=23211.000000 s hg19.chrUn_gl000223 155234 240 + 180455 tgcatgtctatgtgtacgtgtctgtgtatacgttacgtgtgtatcagtatgtgtgtgcgtctgtgagtatgtgtgatgtatttgt--atcagtgtgtctgtacatgtctgtatgtgtgATGTTCGTTATCAgtgtgtgtacatgtctctgtgtatg------atgtatcagtgtgtctgtgtgtacatgtctgtg---atgtacgtgtgt-tatcagtatgtctgtacatgtctg--tgtgATGTACATATCtg s gorGor1.Supercontig_0475116 0 238 + 1149 TGCAtgtctgtgtgtacgtgt--gtgtatacgttacgtgtgtatcagtatgtgtgtgcgtctgt----atgtgtgatgtanttgtgtatcagtgtgtctgtacatgtctgtatgtgtgatgtacgttatcagtgtgtgtacatgtctctgtgtatg------atgtatcagtgtgtctgtgtgtacatgtctgtg---ATGTACGTGTGT-TATCAGTATGTCTGTACATGTCTGNGTGTGATGTACATATCtg i gorGor1.Supercontig_0475116 N 0 C 0 s canFam2.chr26 3240393 196 + 42029645 ------------tgtgagcatctgtgta-----catgtgagtgtaagcacgtgtgtgaaggtgt--gtacatgtga-----------gtgagcatatgtgagcatgtgtatatatgaga----------------gagcacatg----tgagtatgagctctacatttaagtgtgtaggtgtgaacatatatgtgcatgtgaacgtgtgCACATGGGAATGT-TGAACATATGAG--TGTGA-----GCATGTG i canFam2.chr26 C 0 C 0 e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 280435 74 - 135371336 I e ponAbe2.chr12 321583 2697 - 136387465 M e rheMac2.chr11 279040 2950 - 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I a score=83072.000000 s hg19.chrUn_gl000223 155474 305 + 180455 tgagtgtgtgtgcatgtc--tgtgtgtactgt-gtgtgtacctgtgtatctgtgtgtgtctgtgagtgtatgtgcgatgtactcagggtgtctgtgtatgcctgtctttgtgtgtgtgtacgtgtgcatcagtgtgtgtgcacgtctgtgtgtgATGTACGGGTGTATTAGtgtgtctgagtgtgtgtgcgtctgtgtgtgtgcatgtctgcgcatgtctgtacgtgtgcgtctgtgtgtgcatgtctgtgtg----tctgtatgtgcgtctgtgcacgtc--tgcacgtatgtgcgtgtctgtacgtgtgcat s gorGor1.Supercontig_0475116 238 309 + 1149 tgagtgtgtgtgcatgtctttgtgtgtactgt-gtgtgtacctgtgtatctgtgtgtgtctgtgagtgtatgtgcgatgtactcagggtgtctgtgtgtgcctgtctttgtgtgtgtgtacgtgtgcatcagtgtgtgtgcacgtctgtgtgtgATGTACGGGTGTATTAgtgtgtctgagtgtgtgtgcgt--ctgtgtgtgcatgtctgcgcatgtctgtacgtgtgcgtct--gtgtgcatgtctgtgtgtgtctgtatgtgtgcgtctgtgcacgtctgtgcatgtatgtgcgtgcctgtacgtgtgcat i gorGor1.Supercontig_0475116 C 0 C 0 s panTro2.chr12 280509 273 - 135371336 tgagtgtgtgtgcatgtc--tgtgtgtactgt-gtc----cctgtgtatctgtgtgtgtctgtgagtgtatgtgCGATGTACTCAGGGTGTCTGTGTGTGCCTGTCTTtgtgtgtgtgtacgtgtgcatcagtgtgtgtgcacgtctgtgtgtgatgtacgggtgtattagtgtgtctg----tgtgtgcgt--gtgtgtgtgcatgtctgc----------acgtgtgcgt----gtgtgtatgtctgtgtg----tgtatgtgcacgtctgtgcatgt----------atgtgcgtgtctgtacgtgtgcat i panTro2.chr12 I 74 C 0 s canFam2.chr26 3240589 284 + 42029645 TACATGGGAATGCATGAA--TGTGTACATGGGAgtgtgtgaacgtttatgtgtgtgtgactatgtgtgtacgtgtga----------gcatgtgtatatgtgaatgcgagtgcatgaatacatgtgaat--gtatgtgtatgtatatgtgtgtgac-catgtgtgtatttgtgagcctg----tgtatattt---tgaatgtgagaacttgagtacatgtgtgtgtgagcatgagtatgtgtgcatctgagtg----tgtgagtgcatatatgtacatgt----gaatgaatgaacatgtgtgaacatgtgtat i canFam2.chr26 C 0 I 184 e felCat3.scaffold_2337 2060 176 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 143126 788 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 321583 2697 - 136387465 M e rheMac2.chr11 279040 2950 - 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30023857 170 - 76506943 I e equCab2.chr8 64191076 1013 - 94057673 I a score=16839.000000 s hg19.chrUn_gl000223 155779 64 + 180455 gtgtgtgcatccgt--gagtgtgtgcgcatgtctgagtgtgcgtgTACTTGTAGATCAGTGTGTGT s bosTau4.chr17 30024027 62 - 76506943 gtgtatgcactggggtgtgtgtgtgtgtgtgtgAGAGAGAGTGTGAGCATGAGTGTGTGAGT---- i bosTau4.chr17 I 170 C 0 s panTro2.chr12 280782 64 - 135371336 gtgtgtgCATCCGT--GAGTGTGTGCGCATGTCCGAGTGTGCGTGTACTTGTAGATCAGTGTGTGT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0475116 547 64 + 1149 gtgtgtgcatccgt--gagtgtgtgcgcatgtctgagtgtgCATGTACTTGTAGATCAGTGTGTGT i gorGor1.Supercontig_0475116 C 0 C 0 s loxAfr3.scaffold_113 143914 59 - 3408981 -----TGAGTCTTT--GGGAAtgtgtgtatgtttgtgtgagtgtgtgcatgtgtgtgagtgtatgt i loxAfr3.scaffold_113 I 788 C 0 s canFam2.chr26 3241057 40 + 42029645 -----------------aacatgtgtatttgtaagggtgtgtgtgt-----CCTCACAGTAT---- i canFam2.chr26 I 184 C 0 s felCat3.scaffold_2337 2236 42 - 7911 ----------------GACtgtgcatgtgtgtgtgagtgtgtgtgta----cctgagagtgc---- i felCat3.scaffold_2337 I 176 C 0 s equCab2.chr8 64192089 33 - 94057673 -----------------------------TGTAAGGGCATGGATGTATACGTGCGTCTGTGT---- i equCab2.chr8 I 1013 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 321583 2697 - 136387465 M e rheMac2.chr11 279040 2950 - 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=132945.000000 s hg19.chrUn_gl000223 155843 124 + 180455 GGGGTGAGAGTTTCGGTGTGAATGTGAGAGCAGAGGGATTAAATAC-TCA-GGATTCTGAAGGGGGAGGCCAGGGTGGCTGCTTTTGG-ACTCAGGACGACAAG-ATGTT-----CCCTTTGCTGGAGAAGCA s ponAbe2.chr12 324303 125 - 136387465 GGGGTGAGAGGTTCGGTGTAAATGTGACAGCAGAAGGATAAAGTAC-TCAGGGATTCTGAAGGGGGAGGCCAGGGTGGCTGCTTTTGG-ACTCAGGACGACAAG-ATGTT-----GCCTTTGCTGGAGAAGCA i ponAbe2.chr12 M 2697 C 0 s gorGor1.Supercontig_0475116 611 124 + 1149 GGGGTGAGAGTTTCCGTGTGAATGTGAGAGCAGAGGGATTAAATAC-TCA-GGATTCTGAAGGGGGAGGCCAGGGTGGCTGCTTTTGG-ACTCAGGACGACAAG-ATGTT-----CCCTTTGCTGGAGAAGCA i gorGor1.Supercontig_0475116 C 0 C 0 s panTro2.chr12 280846 120 - 135371336 GGGGTGAGAGTTTCGGTGTGAATGTGAGAGCAGAGGGATTA----C-TCA-GGATTCTGAAGGGGGAGGCCAGGGTGGCTGCTTTTGG-ACTCAGGACGACAAG-ATGTT-----CCCTTTGCTGGAGAAGCA i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30024089 120 - 76506943 ---GAGAGAGATCTGATGTGGATGTGAGAACAGAGTGCAGGAGTATGTT--GGATCCTGGGGGAGAAA--CAGAGTGACTGTTTTGTG-TGTTAGTACAGTCAGCACGTC-----CCCTTTTCCAGAGAAGCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64192122 111 - 94057673 ---GTGAGAGACTTGATGTCAATGTGAGAGCAGAGTGCGGGAGTATGTCA-GAATCCTGAAG------------GTGACTGTTGTGAA-TGTTAGGACAATCAGCATGTT-----GCCTTTTCCAGGGGGACA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 2278 118 - 7911 ---tgaatgtgcatg-tgc--gtgtgAGGGCGGGGTGCAGGAGTACGTCG-GGATCCTGAAGGAGGAAACGAGAGTGGCAGTTTGGGA-TGTTAGTATAGTCGGCACATT-----CCCTTTTCCAGAGGTG-- i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3241097 119 + 42029645 ---GAGAGAGATTTGATGT--GACTGAGAGCAGAGTGCAGGAGAATGTCA-GGATCCTGGAGGAGGAAGCCAGAGTGACAGTTTTGGA-TATTAGTATAGTTGGCACATT-----CCCTTTTCCAGAGGTG-- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 143973 116 - 3408981 -------gAAACTTGGTGT--GATTGAGAGTTAGGTG------TATGTCG-GGATACTGAAAGAGGAAGCCTTGGTGACTGCTTTTGGATGTTAGTAGAAATAG-GCACTCACTCCCTTTCCCAGGAGAAGTA i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 279040 2950 - 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=410104.000000 s hg19.chrUn_gl000223 155967 271 + 180455 GCCGGAGGAGGTCCCCTCTGCATTCACTCAAAAAGGGTCCGAACTAATTCGAAGCTTCCGGGAGGGCAGGGGGACCTT-GATCTCAGGGACCCCAGGTTTGGATGCCAGTAACT--ATGGGGTCTCTTTGTAGTCAGGGCTTCTCTCTGGGCCTCCTAGATGG-TAGAG-CCCCCGACCTCTGTGCCACAAGCCTGAAGGAGCTCCC-AGGCGTCTCAGGAGGAGCTGC---GTCTTTGGATGCCAATCTCTGGGCTCTTCCAGGATGTTTTTTCTCGAG s panTro2.chr12 280966 271 - 135371336 GCCAGAGGAGGTCCCTTCTGCATTCACTCAAAAAGGGTCTGACCTAATTCGAAGCTTCCGGGAGGGCAGGGGGACCTT-GATCTCAGGGACCCCAGGTTTGGATGCCAGTAACT--ATGGGGTCTCTTTGTAGTCAGGGCTTCTCTCTGGGCCTCCTAGATGG-TAGAG-CCCCCGACCTCTGTGCCACAAGCCTGAAGGAGCTCCC-AGGCGTCTCAGGAGGAGCTGC---GTCTTTGGATGCCAATCTCTGGGCTCTTCCAGGATGTTTTTTCTCGAG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0475116 735 271 + 1149 GCCGGAGGAGGTCCCCTCTGCATTCACTCAAAAAGGGTCCGAACTAATTCAAATCTTCCGGGAGGGCAGGGGGACCTT-GATCTCAGGGACCCCAGGTTTGGATGCCAGTAACT--ATGGGGTCTCTTTGTAGTCAGGGCTTCTCTCTGGGCCTCCTAGATGG-TAGAG-CCCCCGACCTCTGTGCCACAAGCCTGAAGGAGCTCCC-AGGCGTCTCAGGAGGAGCTGC---GTCTTTGGATGCCAGTCTCTGGGCTCTTCCAGGATGTTTTTTCTCGAG i gorGor1.Supercontig_0475116 C 0 C 0 s ponAbe2.chr12 324428 272 - 136387465 GCTGGAGGAGGTCCCCTCTGCATTCACTCAAAAAGGGTCCGAACTAATTCGAAGCTTCCGGGAGGGCAGGGGGACCTT-GATCTCAGGGACCCCAGGTTTGGATGCCAGTAACT--GTGGGGTCTCTTTGTAGTCAGGGCTCCTCTCTGGGCCTCCTAGACGG-TAGAGCCCCCCGACCTGTGTGCCACAAGCCTGAAGGAGCTCCC-AGGCGTCTCAGGAGGAGCTGC---ATCTTTGGATGCCAATCTCTGGGCTCTTCCAGGATGTTTTTTCTCGAG i ponAbe2.chr12 C 0 I 1 s rheMac2.chr11 281990 270 - 134511895 GATGGAGGAGGTCCC-TCCGCATTCACTCAAAAAGGGTTCAAACTAATTTGAAGCTTCCAGGAGGGCGGGGGGACCCT-GATTTCAGGGACCTCAGGTTTGGGTGCCGGTAACT--ATGGGGTCTCTTTATAGTCCGGGCTCCTCTCTGGGCCTCCTAGACGG-TGGAA-CGCCTGAGCTCTGTGCCGCGAGCCTGAAGGAGCTCCT-GGGCGTCTGAGGAGGAGCTGC---GTCTTTGGATGCCAATCTCTGGGCTCTTCCAGGATGTTTGTTCTCAAG i rheMac2.chr11 I 2950 I 83 s bosTau4.chr17 30024209 247 - 76506943 GCAGGAGGGCTCC---TGTGCATCAACCCAAAAGGGGTCCAGATGAGATAGATGCTTCC---AGGGCAGGTGGGCCTG-CATCTCAAGGAGCCCAGGTTTGGAAAGCATTGACT--CTGGAGTCTCTTC--------------CCTCA--GCCTCCTAGACCACTGGGA-CATTC--CC-TTGC-CCAGGAGCCCCAAAGAGCTCCCTGCATGTCCCAGGAGGAGGTGCTTTTCCCTTGGGTGTCACTCTCT--GCTCTCAAAGGAAGTTTTTCTT-GAG i bosTau4.chr17 C 0 I 2 s equCab2.chr8 64192233 262 - 94057673 GCTAGAGAAGCTC---TGTGCATCAACCCAGAAGGGGTCCAAACTAAATAGAAGCTTCC---AGGACAGGTGGGCCTT--GTCTCAGGGACCCCAGGTCTGGAGAGCCATAACC--ATGGGCTCTCTTT-CACTCAGAGC-CCTCTCAGGGCTTCCTGGACTC-TGAGA-CCCCCTTCC-ATGC-CCTGGAGCCTGGAGCAGCTCCCCAGGCATTTCGGAAAGAGGTGCTTTTCCTTTGGATGTTGTTCTCT--ACTCTCTCAGGACATTTTTTCCTGAG i equCab2.chr8 C 0 I 535 s felCat3.scaffold_2337 2396 234 - 7911 ---AGAGAAGATC---CGTGCATCAACCCCAAAGGGGTCCAAGCTAAACAGAAGCTCCT---GGGGCACGTGGGCCTTGGATCTCAGGGACCCCAGGTTCGGATGGCAACAACT-------CTCTTTTT------------TCACTCAGGGCTTCCCAGACTGTTGAGA-CCCCT-----GTGT-CCAGGA--------GAGCTTCCTGGGCATCTTGGAAAGAGGCATTTCACCTTTGAATGTTGCTCTCT--GCTATCCTAGAACCTTTTCTCA-GAG i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3241216 223 + 42029645 -ACAGAGAAGATC---TGTGCATCAACCCAAAAGGGATCCGAACTAAAT---AGCTTCC---AGGGCAGGAGGGTCTT-GATCCCAGGAAGCCCAGGTTTGGGTAGCAATAACTTCTCACACTCATTTT---------------CTCAGGGCTTCC--------TGAGA-CCCCCTACCAGTGT-CCAGGAGCCTGGAGGAGCACCCTGGGCATCT----------------ACCTGTGGAGAT---GCTCT--GCTCTTCCAGAACGTTTTTTCCTGAG i canFam2.chr26 C 0 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=176876.000000 s hg19.chrUn_gl000223 156238 138 + 180455 AATCTGCCTCGAGCCGCAAACCC---TTCACACTGCGGAC-TAGAAAGAGTC------CTCTTAGAGCCTCTGAC-C-TTTCTCT---CTACTTCAGCTGCGAACGGGCGAAGC-CTGCGCCATGCCTCTCCTTTCCCGCCATTTCTAGGAATT s panTro2.chr12 281237 138 - 135371336 AATCTGCCTCGAGCCGCAAACCC---TTCACACTGCAGAC-TAGAAAGAGTC------CTCTTAGAGCCTCTGAC-C-TTTATCT---CTACTTCAGCTGCGAACGGGCGAAGC-CTGCGCCATGCCTCTCCTTTCCCGCCGTTTCTAGGAATT i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0475116 1006 138 + 1149 AATCTGCCTCGAGCCGCAAACCC---TTCACACTGCGGAC-TAGAAAGAGTC------CTCTTAGAGCCTCTGAC-C-TTTATCT---CTACTTCAGCTGCGAATGGGCGAAGC-CTGCGCCATGCCTCTCCTTTCCCGCCGTTTCTAGGAATT i gorGor1.Supercontig_0475116 C 0 N 0 s ponAbe2.chr12 324701 139 - 136387465 AATCTGCCTCGAGCCGCAAACCC---TTCACACTGCGGAC-TAGAAAGAGTC------CTCTTAGAGCTTCTGAC-CTTTTATCT---CTACTTCAGCTGCGAACGGGCGAAGC-CTGTGCCATGCCTCTCCTTTCCCGCCGTTTCTAGGAATT i ponAbe2.chr12 I 1 C 0 s rheMac2.chr11 282343 136 - 134511895 gatctgcctctagccacaagccc---ttcacactgcggac-tagagaGAGTC------CCCTCAGAGCCTCTGAC-C--TTATCT---CCACTTC--CTGTGAATGGGCGAAGCTCCGCGCCATGCCTCTGCTTTCCCGCCTTTTCTAGGAATT i rheMac2.chr11 I 83 C 0 s bosTau4.chr17 30024458 139 - 76506943 ACCTGTTCTCAAGCACCACGCTT---TTCACACTG--GAC-TGAGGAGAGTCCAGTCTCATTGGGGGACATTGAT-C-TTTGTGTCCGCTGCACC--CA-CATGTGGGCAGAAC-CCATGGCATTACTCTCCCTTCCCAC---CAGTAGGAGTT i bosTau4.chr17 I 2 C 0 s equCab2.chr8 64193030 133 - 94057673 attttgcctcc--ccGGGAACTC---TTCACATTG--GAC-TAGAAAGTGTCCACTTTCACTCGGGGAATCCGACCT-TTTATGT---CTGCACC--CC-TGAGTAG--CAGAA-CCACGTCACTCTTCTCGCTTCCCAC---TCCTAGGAACT i equCab2.chr8 I 535 C 0 s felCat3.scaffold_2337 2630 137 - 7911 ATTTGCCCTCCAGCCCTACACTC---TTCACGCTG--GAC-TAAACAGAGTCCAGTTTCCCTGGGGGGATCTGAC-T-TTTATGT---ATATACG--CCACAAGTGGGCAAAAC-CCCAGTCATTCTTCTCCCTTCCCAC---TTTTAGGAATT i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3241439 140 + 42029645 ATTTGCCCTGGAGCCATATACACTCTTTCACACTG--GACTTAAATGGAGTTCAGTTTCATTCTGGGGGTCTGAC---TTTGTGT---CAACACC--CTACAAGTGGGCGAGAC-TTGTGTTATCCTTCTCTTTTTGTGC---TGCCAGCCATT i canFam2.chr26 C 0 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=144593.000000 s hg19.chrUn_gl000223 156376 158 + 180455 CCTCCTACCTCAG-TGTCCTTGCTCTGCCATTCACCACGG-TTTGGGTCAGAATCCAGAGTTCAGCCAATGCTTCCAGAGAGACT--GTGGCTGTTAACTGTCCC-------------------TGTTGACACTGGGA-------------------------------CCTGTCTCCCCT-GGTGACCTGAGTCTTACCTTGATTCTCTTAA s canFam2.chr26 3241579 140 + 42029645 CCTCCTGGTCTAGATGCCCTTGCTCTGCTC-CTCCCACTG-CTTGGGTCAAAATTCACAATCCATCCTGTCTGTCTA----GACC--GTGGTTCCTGACTGCTCCACAAGAGCCCCC-----AATGTTAACATGGGGA------------------------------------------------------------CCTCCGTCCTCTCAG i canFam2.chr26 C 0 C 0 s felCat3.scaffold_2337 2767 202 - 7911 TTTCCTGCTCTGGATGCCCTTGCTCTGCCCTCTACCACTGTTTTGGGCCAATATTCAAAATCCAGCCCGTCTTTCGA----TTCT------TTCTTGACTGCCCCACAAGATCCTCCT-TATATTGTTGATGTGAGAACCTCAATATAAGGGAACCTCCTTATATTGTTGATGTCTCCACTTACTGGCCCAAGTCGTCCCTCCATTCTCTTCA i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64193163 146 - 94057673 CTTCCTGCCCTGGACGCCCTTGCTCTGCCCTCTACCACTACTTTGGGTCAAAACTCAAAGTCCAGCCTATTTTTCAG-ACTGACT--GTGGTTCTTGACTGCCCCACAAGACCCTC-------------ACTTTGGGA---------------------------------------------------CTAGTCTCCCCTTGATTCTCTTTT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30024597 175 - 76506943 CTTCCTGCCCTGGATGCCCTTGTTCTGCCCTCTACCACTG-TTTCAGTCAAAATTCAAAATCCAGTCTGTCTTTCCA----GCCTCGCTGGTTCTTGACT-CACTGCAGGTCCTCTCTGTACCTGGTCCACACTGGGA-------------------------------CCTGCCCTCCCTCCCTGGCCTGTGTCTTCTCTTGAT-CTCTCAA i bosTau4.chr17 C 0 I 83 s panTro2.chr12 281375 158 - 135371336 CCTCCTACCTCAC-TGTCCTTGCTCTGCCGTTCACCACGG-TTTGGGTCAGAATCCAGAGTTCAGCCAATGCTTCCAGAGAGACT--GTGGTTGTTAACTGTCCC-------------------TGTTGACACTGGGA-------------------------------CCTGTCTCCCCT-CATGACCTGAGTCTTACCTTGATTCTCTTAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 324840 158 - 136387465 CCTCCCGCCTCAG-TATCCTTGCTCTGCCGTTCACCACGG-TTTGGGTCAGAATCCAGAGTTTAGCCCGTGCTTCCAGAGAGACT--GTGGTTGTTAACTGTCCC-------------------TGTTGACACTGGGA-------------------------------CCTGTCTCCCCT-TGTGACCTGAGTCTTACCTTGATTCTCTTAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 282479 159 - 134511895 CCTCCTGCCTCAG-TGTCCTTGCTCTGCCGTTAACCACGG-CTTGGGTCAGAATCCACAGTTTAGCTAATCTTTCCAGAGTGACT--ATGGTTGTTAACTGTCCA-------------------TGCTGACACTGGGA-------------------------------CCTGTCTCCCCTCCCTGGCCTGAGTCTTACCTTGATTCTCTTAA i rheMac2.chr11 C 0 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=36058.000000 s hg19.chrUn_gl000223 156534 57 + 180455 TGACGGAGAGGGAGACATTAAGAAC--TTGGG-AGCCAATGCCAGGCGCGAGCTACACTG s rheMac2.chr11 282638 56 - 134511895 TGACAGAGAGGGGGACATAAAGAAC--TCGGG-AGCCAACGCC-GGCGCGAGCTACACTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 324998 57 - 136387465 TGACGGAGAGGGAGACATTAAGAAC--TCGGG-AGCCAATGCCAGGCGCGAGCTACACTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 281533 57 - 135371336 TGACGGAGAGGGAGACATTAAGAAC--TTGGG-AGCCAATGCCAGGCGCGAGCTACACTG i panTro2.chr12 C 0 C 0 s equCab2.chr8 64193309 46 - 94057673 TGACAGAGAGGGAGACGTTTAAGGCCCTCAAGGGGATGATGACAGG-------------- i equCab2.chr8 C 0 I 49 s felCat3.scaffold_2337 2969 48 - 7911 TCATAAGGTGGGAGACTTTCAAGGCCCTCAGG-AGATGATGTCAGAAGC----------- i felCat3.scaffold_2337 C 0 I 124 s canFam2.chr26 3241719 39 + 42029645 TGACAGAGAAGGAGACATTTAAGGCTGTCAGG----TGATGCC----------------- i canFam2.chr26 C 0 I 66 e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30024772 83 - 76506943 I a score=299150.000000 s hg19.chrUn_gl000223 156591 608 + 180455 GTCTCCGCCTCCTGCTCCCTGCAGATACtgttggggaccagcctcaacaccacccgtagggtacccaaagtccggtggcgacaaaggaatgagaagagacaggttaagagtgcataaagagtgagggccagggggccaattgcaaatcggaggctgcaaaaggcgcagggttctggtctccactctattgattgagtaccatcacttacagctaagaagcagacg-ttcagggcgaaacagtgaaagggaggcagtgcgcccatcatacgtgtaatctatagcactggtggtttaaatgaatctcctttgtgctcaaacagcctatttttaacttatcggagagtagctagtgggagtgggcttaagtaggagcctgcacgtctggc----ttccagtgcttcaaaggagtgtccttctccttgaacacagtgtttatggatgatggagcaa--ctcactcagagcctgggaacatcacggcgataagaaggctttcctcc-------------gaggctttccacaacttcttgtcccatatttttatggccagttaatacaggcaccccataagcctttcccccaacaGATACCAAGCAGGCGTGAGCTACACTGGTCTCTGCCTC s rheMac2.chr11 282694 617 - 134511895 GTCTCCGCCTCTTGCTCCCTGCAGATGCtgttggggaccagcctcaacatcacccgtagggtacccaaagtccggtggcgactaaggaatgagaagagacaggttaagagtgtataaagagtgggggccagggggccaattgcaaaatggaggctgcaaaaggcccagagttctggtctccactctgtttattgagtacaatcacttagatctacgaagcaaacg-ttcagggcgaaatggtgaaaggga-gcagtgcg----tcctacgtgtaatctatagtagtggcggtttaaatgaatctcctttgtgctcaaacagcatatttttaacttatcggagagtagctagtgggggcgggcttaactaggagcctgcacgtctggccacattccagtgcttcagaggagcgtctctctccttaaacacagtgttcatggataagagagcaagtctcgctcagaacatgggaacataatggcaataagaaggc-atcctcctcagcggcctcttgtggctttccacaacttattgtcccatatttttatggccagttaatacaagcaccccatatgcctttccaccaacaGATAC----CAGGCGTGAGCTACATTGGTCTCTGCCTC i rheMac2.chr11 C 0 I 390 s ponAbe2.chr12 325055 620 - 136387465 TTCTCCACCTCCTGCTCCCTGCAGATACtgttggggaccagcctcaacaccacccgtagggtacccaaagtccggtggtgacgaaggaatgagaagagacaggttaagagtgcataaagagtgagggccagggggccaattgtaaaacggaggctgcaaaaggcccagggttctggtttccactctatttactgagtaccatcacttagatctaagaagcagacgtttcagggcgaaacggtgaaagggaggcagtgcg----tcatacgtgcaatctatagcactggcggtttaaatgaatctcctttgtgctcaaacagcatatttttaacttaccggagagtagctagtgggagtgggcttaactaggagcctgcacgtctggc----ttccaatgcttcaaaggagtgtctttctccttgaacacagtgttcatggataattgagcaactctcgctcagagcatgggaacatcacggcgataagaaggctttcctcctcagaggccttttgtggctttccacaacttcttgtcccatatttttatggtcagttagtacaggcaccccataaacctttcccccaacaGATACCAGGCAGGCGTGAGCTACATTGGTCTCTGCCTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 281590 620 - 135371336 GTCTCCGCCTCCTGCTCCCTGCAGATACtgttggggaccagcctcagcaccacccgtagggtacccaaagtccggtggcgacaaaggaatgagaagagacaggttaagagtgcataaagagtgagggcc-gggggccaattgcaaatcggaggctgcaaaaggcgcagggttctggtctccactctattgattgagtaccatcacttacagctaagaagcagacg-ttcagggcgaaacagtgaaagggaggcagtgcgcccatcatgcgtgtaatctatagcactggtggtttaaatgaatctcctttgtgctcaaacagcctatttttaacttaccagagagtagctagtgggagtgggcttaactaggaacctgcacgtctggc----ttccaatgcttcaaaggagtgtccttctccttgaacacagtgtttatggatgatggagcaa--ctcactcagagcctgggaacatcacggcgataagaaggctttcctcctcagaggcctcttgtggctttccacaacttcttgtcccatatttttatggccagttaatacaggcaccccataagcctttcccccaacaGATACCAAGCAGGCGTGAGCTACACTGGTCTCTGCCTC i panTro2.chr12 C 0 C 0 e felCat3.scaffold_2337 3017 124 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30024772 83 - 76506943 I e equCab2.chr8 64193355 49 - 94057673 I e canFam2.chr26 3241758 66 + 42029645 I a score=17645.000000 s hg19.chrUn_gl000223 157199 38 + 180455 CTGCTCCCTGCAGGTGCCAGGCGTGAGCTACGCTGATG s rheMac2.chr11 283701 38 - 134511895 ctgctccccgcaggtgccaggcgcgagccacactgacg i rheMac2.chr11 I 390 C 0 s ponAbe2.chr12 325675 38 - 136387465 CTGCTCCCTGCAGGTGCCAGGCGTGAGCTACACTGATA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 282210 35 - 135371336 CTGCTCCCTGCAGGTGCCAGGCGTGAGCTACGCTG--- i panTro2.chr12 C 0 C 0 e felCat3.scaffold_2337 3017 124 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30024772 83 - 76506943 I e equCab2.chr8 64193355 49 - 94057673 I e canFam2.chr26 3241758 66 + 42029645 I a score=5502.000000 s hg19.chrUn_gl000223 157237 36 + 180455 TCTGCTTCCGCAGGTGCCAGGCGTGAGCTACACTGG s panTro2.chr12 282245 1 - 135371336 -----------------------------------G i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 325713 36 - 136387465 TCTGCTTCCACAGGTGCCAGGCGTGAGCTACACTGG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 283739 36 - 134511895 tctgcttccgcaggtgccaggcgcgagcTACGCCGG i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3241824 20 + 42029645 TCTGTGTGCACAGGGCCCAG---------------- i canFam2.chr26 I 66 C 0 e felCat3.scaffold_2337 3017 124 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30024772 83 - 76506943 I e equCab2.chr8 64193355 49 - 94057673 I a score=12592.000000 s hg19.chrUn_gl000223 157273 33 + 180455 TCCCCGCCTCCTGGGCCCTGC-------AGGTGTGGATGC s panTro2.chr12 282246 33 - 135371336 TCCCCGCCTCCTGGGCCCTGC-------AGGTGTGGATGC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 325749 33 - 136387465 TCCCCGCCTCCTGTGCCCCGC-------AGGTGTGGATGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 283775 33 - 134511895 CCCCCGCCTCCTGTGCCCTGC-------AGGTGTGGATGC i rheMac2.chr11 C 0 C 0 s canFam2.chr26 3241844 3 + 42029645 -------------------------------------CTC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64193404 40 - 94057673 TTCCTGCCTCCTGCTCACCCTCTGCACAAGGCGCAGGCTT i equCab2.chr8 I 49 C 0 e felCat3.scaffold_2337 3017 124 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30024772 83 - 76506943 I a score=48806.000000 s hg19.chrUn_gl000223 157306 51 + 180455 TGCTGGCTGTGCACCGTGGGGTTCCT-GAGCGTGGGGTCACCTGGGAACGAC s panTro2.chr12 282279 51 - 135371336 TGCTGGCTGTGCACCGTGGGGTTCCT-GAGCGTGGGGTCACCTGGGAACGAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 325782 51 - 136387465 TGCTGGCTGTGCACCGTGGGGTTCCT-GAGTGTGGGGTCACCTGGGAACTAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 283808 51 - 134511895 TGCTGGCTGTGCACCGTGGGGTTCCT-GAGCGTGAGGTCACCTGGGAACTGC i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30024855 49 - 76506943 TGCCGACTGAGCAGTTTGGGGCTCCT-AAGCAGGTGGTGA--TGAAAGCAGA i bosTau4.chr17 I 83 I 4 s equCab2.chr8 64193444 49 - 94057673 TGCTGACTGTGCAGTGCAGGGCTCCT-GAGCGGGTGGCGA--TCAGAGCAGG i equCab2.chr8 C 0 I 4 s canFam2.chr26 3241847 50 + 42029645 CGCTGCCTGAGCTGTGGGGGGGCCCTGGAGCATGTGGTGC--TGAGCACAGC i canFam2.chr26 C 0 C 0 e felCat3.scaffold_2337 3017 124 - 7911 I e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=126092.000000 s hg19.chrUn_gl000223 157357 143 + 180455 CCTTGTCTAATTCTCCAATCCTCAGCCT----CTGGGGTACGTGGGAGACCGCG-----------CAGAGGAGTGGC--GTCTGGCTGTACTCTTTTTT-TCAGTTGCCCTGAGGCAAAACCCGGCCGTTTGCTAATATCCAGTCCTAACTTTCCTCCCTC s panTro2.chr12 282330 143 - 135371336 CCTTGTCTAATTCTCCAACCCTCCGCCT----CTGGGGTACGTGGGAGACCGCG-----------CAGAGGAGTGGC--GTCTGGCTCTACTCTTTTTT-TCAGTTGCCCTGAGGCAAAACCCGGCCATTTGCTAATATGCAGTCCTAACTTTCCTCCCTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 325833 141 - 136387465 CCTTGTCTAATTCTCCAACCCTCAGCCT----CTGGGGTACGTGGGAGACTGCG-----------CAGAGGAGCGGC--GTCTGGCTCTA--CTGTTTT-TCAGTTGCCCTGGGGCAAAACCCAGCCATTTGCTAATATCCAGTCCTAACTTTCCTCCCTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 283859 140 - 134511895 CCTTGTCTAATTCTC--AGCCT--GCCT----CTGGGGTAAGTGGGGGACTGCA-----------CAGAGGGGTGGC--GTCTGCCTCTACTCTTTTTTCTCAGTTGCCCTGGGGAAAAACCCGGCCATTTGCTAATATCCAGTCCTAACTTTCCTCCCTC i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30024908 142 - 76506943 CTTTGTCTGAT--TCCAGCCCTCAGCCCAACCCTGAGGGTGGCAGGAAGGACCT-----------CAAAGGGGCCAATGTTCT--TTCCACTCTTG----TTAGTGGCCCTGGAGCAAAACCTGGCAGTGTGCTGACACCCAGGCATAACTTTCTGCCCTC i bosTau4.chr17 I 4 C 0 s equCab2.chr8 64193497 142 - 94057673 TCTAGTCTGTG--TCCAG-ACTAGACCCAAC-TCGGGGTGGGTAGTAACTGCCT-----------TGAAGGAGCTGCTATTTTGGCTGCACTCTTG----TTAGCTGCCCTGGGGCAAAACCTGGCAGTTGGGTGACACCCTGGCGTAACTTTCTCCCCTC i equCab2.chr8 I 4 C 0 s felCat3.scaffold_2337 3141 151 - 7911 TCTCGTCTGTT--TCCAGCCCTTGGCCCAAC-TTGGGGTGGGTAGTAACTGCCTCGGGGCGGGGGGGGGGGGGCTGG---TCTGGCCCCACTCTTG----TTAGTTGCCCTGAGGCAAAACCTGGCAGTTCGCTAACATCCAAGCATAACTTCCTATCTTC i felCat3.scaffold_2337 I 124 C 0 s canFam2.chr26 3241897 113 + 42029645 -------------------CCTTGGCCAAGC--TGGAGTAGGTAGTAAATGCCT-----------GGGAGGGGCTGGCGCCGTGGCTCTGCTCTGG----TTAGCTGCCCTGGGGTCAAGCC-GGCAGTGGGCTAATATCCAGGC-TGACT---------- i canFam2.chr26 C 0 C 0 e oryCun2.chrUn0106 729235 563 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=53609.000000 s hg19.chrUn_gl000223 157500 113 + 180455 ATTTGAGGCAGGGGAGCGGAGACTTCAGTCATTGCTTACTCTAT-TTCTGTGGGACAGTGAAGACAC-------ACAAAGA--------CGAGA-------------------AAAGGGCTCTTGCTGTAGGTCTTCT------------CGCTCAGTTT---- s rheMac2.chr11 283999 112 - 134511895 ATTTGAGGCAGGGGAGTGGACACTTCAGTCACTGCTTACTCTGT-TTCTGTGGGACAGTGAAGACAG-------ACGAAGA--------TGAGA-------------------AAA-GGCCCTTGCTGTAGGTCTTCT------------CGCTCAGTGT---- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 325974 113 - 136387465 ATTTGAGGCAAGGGAGCGGAGACTTCAGTCATTGCTTACTCTGT-TTCTGTGGGACAGTGAAGACAG-------ACAAAGA--------CAAGA-------------------AAAGGGCTCTTGCTGTAGGTCTTCT------------CGCTCAGTTT---- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 282473 113 - 135371336 ATTTGAGGCAGGGGAGCGGAGACTTCAGTCATTGCTTACTCTAT-TTCTGTGGGACAGTGAAGACAG-------ACAAAGA--------CGAGA-------------------AAAGGGCTCTTGCTGTAGGTCTTCT------------CGCTCAGTTT---- i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 729798 111 + 1032594 ATTTGAGAGAGATAAATGGAAACCTCAGACACAGCTTTCTCTGTATTGTTTAGGACACTGAAGAC----------CAAAGA--------CCAGA-------------------CGAGAATTCTTGTTCTAGAACTTCT------------TGCTCAGCTT---- i oryCun2.chrUn0106 I 563 I 58 s bosTau4.chr17 30025050 140 - 76506943 ACTTGTGAAGGATGAGTCCACAC---------ATCTCTCTCTCT-TCAACTGGGACACTCAGGATGCCTCCTT-CCCCTTCCCGCCATTCTTAATAGAAC-------------AACAGGCTCCTGCTCTGGATCTCCTGTAGGAATTATGTTCTCTTCTTTCTC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64193639 150 - 94057673 ATTTGCAGCAGATGAGTGGACACTTCTGTC-CATCTTTCTCTGTGTCCATC--GACATTGAAGGTGC--CTTT-CCCATTG--------TTTGGTAGAACAGAGCCTCCAAACAGCGCATTCTTGCTCTCAGTCTTCTGCAGGTACCACGTTCTCTCCTTGCTC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 3292 133 - 7911 ATTTGCAGCAG---------------------ATTTGTCTCTGTGTCCATTGGGACATTGAAGACAC--CCTCACCTATTC--------TTTAATAGAACAGTGCCTTTAAATAAAGAGCTCTTGCCCTAAACCTTCCACAGGTACTATATTATCTCTTTGTTC i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3242010 101 + 42029645 ---------------------------------------TCTCTGTCCACTGGGACATTGGGGACAG--CCTC-CCTATGC--------TTCAGTGAGAC-------------AAAGAGCTCTTGCTCTGCAGCTTCTGCAGGAACTCTATCCTCCCTTTGTTC i canFam2.chr26 C 0 C 0 e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=77167.000000 s hg19.chrUn_gl000223 157613 90 + 180455 ACCTCACTTTCTGGAAAGGTG-CCACTGGCCT-CGTGCCACTTGTTATCTTCCTGGCTAGCCGGTTAGCCCCTTGCCTGTGGGGCCCTTGCC s panTro2.chr12 282586 90 - 135371336 ACCTCACTTTCTGGAAAGGTG-CCACTGGCCT-CGTGCCACTTGTTATCTTCCTGGCTAGCCGGTTAGCCCCTTGCCTGTGGGGCCCTTGCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 326087 90 - 136387465 AGCTCACTTTCTGGAAAGGTG-CCACTGGCCT-TGTGCCACTTGTTCTCTTCCTGGCTATCCAGTTAGCCCCTTGCCTGTGGGGCCCTTGGC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 284111 90 - 134511895 ACCTCACTTTCTGGAAAGGTG-CCGCTGGCCT-CGTGCCACTCAATATCTTCCTGGCTGGCTGATTAGCCCCTTGCCTGTGGGGCCCTTGCC i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30025190 83 - 76506943 AGTTTACTTTCTGGAAAAGTGTCCATTGA-TTGTCCATCACATCTGGTCTTCCT-TGCAGCCTGTTA-------GCCTTTGGGGACCAAGCC i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64193789 82 - 94057673 A--CTGTTTTCTGGAGCGGTATCCACTGACCTGTCCACCACACTGTGTCTTCCT-CGTGGCCTGTCA-------GTACGTGGAAACTGAGTT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 3425 85 - 7911 CATTTATTTGCTGGAAAAGTGCCCACCGACCAGTCCACCGTGTCCAGTCTTCTTAAGTAGCCTGTCA-------GCCTGTGGAGACCAAGCT i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3242111 84 + 42029645 AGTTTATTTTCTGGAAAGGAACCCACAGACCTGTTCACCAGGTTTGGCCTTCCTGAGCAGCCCATCA-------GCCTGCGGAGACC-AGCG i canFam2.chr26 C 0 C 0 e oryCun2.chrUn0106 729909 58 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=84058.000000 s hg19.chrUn_gl000223 157703 117 + 180455 GTGTGCTTGGGAGTCACCTGCTTCAGCCCTGGGAGCTTCAGAGCTGCTCGA------------------CAACCATTCCTAGGCCACGTGG-CCTCGCTCCACAGGTGTAGATGGCAAGTGCTGGACAAACGTTGC s rheMac2.chr11 284201 117 - 134511895 GTGTGCTCGGGAGTCACCTGCTTCAGCCCTGGGAGCTTCGGCGCTGCTTGG------------------CAACCATTCCTGGGCCACGTGG-CCTCGCCCCGCAGGTGTAGACGGTGATTGCTGGACAAATGTTGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 326177 118 - 136387465 GTGTGCTCGGGAGTCACCTGCTTCAGCCCTGGGAGCTTCAGAGCTGCTCGG------------------CAACCATTCCTGGGCCACGTGGCCCTCGCTCCGCAGGTGTAGATGGCAAGTGCCGGACAAATGTTGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 282676 117 - 135371336 GTGTGCTTGGGAGTCACCTGCTTCAGCCCTGGGAGCTTCAGAGCTGCTCGG------------------CAACCATTCCTGGGCCACGTGG-ACTCGCTCCACAGGTGTAGACGGCAAGTGCTGGACAAACGTTGC i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 729967 115 + 1032594 GTGTGCTGTGGTGTGACCTACTTCAGCACTAAGAGCTTAGGAGGCGGCCAG------------------CAGTCACTCCTGGACAGCCTGA---CCACACCTCAGGTGCAGACTGCAAGTGTTAGACAAATTTTAT i oryCun2.chrUn0106 I 58 C 0 s bosTau4.chr17 30025273 95 - 76506943 --------AGG-------------AACACGAACATCTCAGCGGGTGCCCAGAGATGTTCCCCATCCTCCCAGACCT-CCCAGACCA----------------CAGGTTTGGACCAC-AGCACTGGACAGATCTC-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64193871 81 - 94057673 --------GGG-------------AGCACCAGGAGCTTAGGAGGTGCTCAG------------------CAACCGTTCCTGGACCA----------------CAGGTGGAGACCACAAGCAATAGACAAATCTCGA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 3510 77 - 7911 --------GGG-------------AGCACCGGGAGCTT---AGGTGCTCAG------------------CAAACAC-CCTAGACCA----------------CAGGTAGAGACCACAAGTGCCAGACAGACCTCTC i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3242195 70 + 42029645 --------GGG-------------CGCACCGCTGG----------GCTCAG------------------CTGCCGCTCCTGGCCTA----------------CAGGGGCCCCCTGCCAGCGCC-GACAAGTCTCCC i canFam2.chr26 C 0 C 0 e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=43728.000000 s hg19.chrUn_gl000223 157820 23 + 180455 TTGGCAGGATTGCTACGTGAGGT s panTro2.chr12 282793 23 - 135371336 TTGGCAGGATTGTTACGTGAGGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 326295 23 - 136387465 TTGGCAGGATTGTTACGTAAGGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 284318 23 - 134511895 TTGGCAGGATTGTTATGTGAGGT i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_78714.1-13947 13 23 - 13947 TTGGCTGGATTGTTATGGAAGGT i tupBel1.scaffold_78714.1-13947 N 0 C 0 s oryCun2.chrUn0106 730082 23 + 1032594 TTGGCAGAATTGTTTTGTAAGTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30025368 11 - 76506943 --AGTAAGGAGAC---------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64193952 23 - 94057673 TTGGTGGGGTTGCTATGAAAGGT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 3587 23 - 7911 TTGGCAGGGCTGCTGCGAAAGGT i felCat3.scaffold_2337 C 0 I 1938 s canFam2.chr26 3242265 23 + 42029645 CTGGCAGGGTTGCTACAAAAGCT i canFam2.chr26 C 0 C 0 e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=302669.000000 s hg19.chrUn_gl000223 157843 224 + 180455 AGAATTTCCGTCCCTCTTGTCTCCCAAGTTTACAGGAAGCTT---TTTTTG-------------GACATTTCTTTTCAGACTCATTCTGATGAAGGAAAGAGCGTCCCTGTGCAGCTGCGTGTCCTTCAG-TTCTTTGGCTCTGATTCCGTGTCTGGCTTCATCTAAGTGGCCTGGTCCATGGGCAGTGAAGAAATGTAAAGTGTGAGCATTC--GTGTGTACCAGGATGTGGTGCTTTTT--GA s panTro2.chr12 282816 224 - 135371336 GGAATTTCCGTCCCTCTTGTCTCCCAAGTTTACAGGAAGCTT---TTTTTG-------------GACATTTCTTTTCAGACTCATTCTGATGAAGGAAAGAGCATCCCTGTGCAGCTGCGTGTCCTTCAT-TTCTTTGGCTCTGATTCCGTGTCTGGCTTCATCTAAGTGGCCTGGTCCATGGGCAGTGAAGAAATGTAAAGTGTGAGCATTC--GTGTGTACCAGGATGTGGTGCTTTTT--GA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 326318 223 - 136387465 AGAATTTCTGTCCCTCTTGTCT-CCAAGTTTACAGGAAGCTT---TTTTTG-------------GACATTTCTTTTCAGACTCATTCTGATGAAGGAAAGAGCATCCCTGCGCAGCTGCGTGTCCTTCAA-TTCTTTGGCTCTGATTCCATGTCTGGCTTAATCTAAGTGGCCTGGTCCATGGGCAGTGAAGAAATTTAAAGTGTAAGCATTC--ATGTGCACCAGGATGTGGTACTTTTT--GA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 284341 224 - 134511895 AGATTTTCGGTTCCTCTTGTCC-CCAAGTTTACAGGAAACTT---TTTTTG-------------GACATTTCCTTTCAAACTCATTCTGATGAAGGAAAGAGCATCCCTGTGCAGCTGCATGTCCTTGAATTTCTTTGGCTCTGACTCCATGTGTGGCTTAATCTAAGTGGCCTGGTCCATGGGCAGGGAAGAAATTTAAAGTGTAAGCATTC--ACATGCACCAGGATGTGGTACTTCTT--GA i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_78714.1-13947 36 219 - 13947 AGAATGGGTGTCCTTCTTGT---CCAAGTTAATAAGGAAA-G---TTTTTG-------------AATGCTTTTGTTCAGGCTCGATCTTATGCAGGAAATAACATCTCTGTGCAGTCTTGTGCCCTGGAA-ATCTCCGGCTCTGATTCTGTCTCTGGTTGAATGAAAGTGACCTGGCCCAAGGACAGCAGATGAATTGAAAGTGTAAGTATTT--GTGTGCA-TAAAATATAATACTTTGA--AA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s oryCun2.chrUn0106 730105 218 + 1032594 TGA-TCTCTAT-CCTCTTGTTC-CAGAGTTTACAGGGTATTG---GGGGTGGGAGGGGGGAGAAGAGCTGTTCCTTCAGGTTTATT---GTGAAGGAAATAAAATCCTTGTGTGACCCTGTG-CTTTAAA-ATCTTTGGCTCCAATTCCATAACTGGTTGAACATAAATGGCTTGGTCCATGAGCAGTGAAAACATTTAAA--GTAAATATTT--GTGTGCATAAGAAT----------TT--GA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30025379 222 - 76506943 AGAGTTT--GTCCCTCGTGTCC-CCAGGTTTACCAGGAACTGTG-TTTTTG-------------GACACTTCCTTTCAGGTGTACCCTCATGAAGGAAATCACATCCCTGTGTGACCCCGCCCCTGTGGC-GTCCTTGGCTCTGATCTGGTGTCTGGCTGA-TGTCAGTGACCTGGCTCATGAGTGGTGGAGAAATTGAAAGTGTAAGTATTT--GTGTGCATGAAGATGTAGTATTTTATTT-- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3242288 210 + 42029645 GGAGTTT--GTCCCTCTCGTCC-TGTGGTATACTGGGGATGGTGATTTTTG-------------GACATTTCCTTTCAGGTATGTTCTCAGGAGGGAAATAACATCTC--TGCAATTTCACGCCTGTCAA-GTCCTTGGCTTTCATCTCATAACTGGTTCA-------TGACTTGGTACATGA---AGGAAGGAATTCAAAGTGTAAGTGTGT--GTACACATCAAGATGGAGTATTTTTT---- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64193975 223 - 94057673 GGAATGT--GTCCCTCT-GTCC-CCAAGTTTAATGGCTACTGTGTTTTTTA-------------GACATTTCTTTTCAGGTGCATTCTTATGAAGCAACTAACACCCCTGTGCGACCCTGTGCCCGTGGA-GTCCTTGGCTCTGATCTCATATCCGGCTGAATGTAAGTGACCTGATCCATGAGCTGTGAAGAAATTTAAGGTGTATTTGTATCACTTTGCATCAGAACATAGTATTTTTT---- i equCab2.chr8 C 0 C 0 e felCat3.scaffold_2337 3610 1938 - 7911 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=65453.000000 s hg19.chrUn_gl000223 158067 50 + 180455 GTTCA-----------------------------------TTATGCTTATTTTAAATCTTGG-TCAGTCTTTTCCAT--CT-TCTGCC--T s panTro2.chr12 283040 50 - 135371336 GTTCA-----------------------------------TTATGCTTATTTTAAATCTTGG-TCAGTCTTTTCCAT--CT-TCTGCC--T i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 326541 50 - 136387465 GTTCA-----------------------------------TTATGCTTATTTCAAATCTTGG-TCAGTCTTTTCCAT--CT-TCTGCC--T i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 284565 50 - 134511895 GTTCA-----------------------------------TTATGCTTATTTTCAATCTTGG-TCAGTCTTTTCCAT--CT-TCTGCC--T i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_78714.1-13947 255 84 - 13947 GTGTAAGTATCTGTGTGCATAAATATAGCACTTTCTGTACTTATGCTTATTTTAAATCTTAG-CTTGTGTTTTCTA---AT-TCTGCT--C i tupBel1.scaffold_78714.1-13947 C 0 C 0 s oryCun2.chrUn0106 730323 52 + 1032594 GTTTA-----------------------------------ATATGCTTTTTTTAAACCTTGT-TCTGTTTTTGCCAGTAAT-TCTTCC--T i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30025601 51 - 76506943 -GTGA-----------------------------------TCATGCTGATCTTAACTGTTGG-TCCATCTATTCCGATAAT-TCTGCC-T- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64194198 52 - 94057673 CTTTC-----------------------------------TTATGCTTATCTTAAATCTTGC-TCTGTCTCTTCCAATAAT-TCTGCCT-- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3242498 52 + 42029645 GTTTA-----------------------------------TTATACTTACCTGAAATCTTGCTTTTGTTTTTTCCAATAAC-TCTGCC--- i canFam2.chr26 C 0 I 1257 s myoLuc1.scaffold_85199 3 48 + 3245 GTTTA-----------------------------------TCATGCTTCTTTTAAATCTTGG-TTTGTC----CCAATAATTCCATCT--- i myoLuc1.scaffold_85199 N 0 I 223 e felCat3.scaffold_2337 3610 1938 - 7911 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I a score=61580.000000 s hg19.chrUn_gl000223 158117 57 + 180455 AAGATGGTATCTTTTGTGCAGTTTGTGGTCTTTGAAAAAGTTTTAAAA--GTTTTTAAA s panTro2.chr12 283090 57 - 135371336 AAGATGGTATCTTTTGTGCAGTTTGTGGTCTTTGAAAAAGTTTTAAAA--GTTTTTAAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 326591 57 - 136387465 AAGATGATATCTTTTGTGCAGTTTGTGGTCTTTGAAAAAGTTTTAAAA--GTTTTTAAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 284615 38 - 134511895 AAGATGATATCTTTTGTGCAGTTTGTAGTCTTTGAAAA--------------------- i rheMac2.chr11 C 0 I 1 s tupBel1.scaffold_78714.1-13947 339 49 - 13947 AAGATGCAATCATTTGTGTAGTTTGTGGTCTTTTAA---GTTTT------TTTTTTAA- i tupBel1.scaffold_78714.1-13947 C 0 C 0 s oryCun2.chrUn0106 730375 49 + 1032594 AATATGATATCTGTTGTGCAGTTTATGGACTTT--------TTTAAAA--GACTTAAAA i oryCun2.chrUn0106 C 0 I 137 s bosTau4.chr17 30025652 42 - 76506943 AAGGTGATCTCTGTTTTACAGTTTGTGATCTTTTAAAAAGTT----------------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64194250 48 - 94057673 AAGATTGTATCTGCTATACAGTTTGTAATCATTGAAGAAGTTTTTAAA----------- i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_85199 274 49 + 3245 AAGGTGATATATGTTATGCAGTTTGTGATCTTTCAA-AAGTGTTAAAAAT--------- i myoLuc1.scaffold_85199 I 223 I 1070 e felCat3.scaffold_2337 3610 1938 - 7911 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e canFam2.chr26 3242550 1257 + 42029645 I a score=24542.000000 s hg19.chrUn_gl000223 158174 28 + 180455 ACTGGAAAAGATACCGCCTGCACTTTCC s tupBel1.scaffold_78714.1-13947 388 27 - 13947 GCTTG-CCATAAGGTGCATGAACTCTCC i tupBel1.scaffold_78714.1-13947 C 0 I 2343 s papHam1.Contig534015 1518 27 - 6619 ACTGGAACAGCTACCGCCTGCACTGT-C i papHam1.Contig534015 N 0 C 0 s rheMac2.chr11 134225678 27 + 134511895 ACTGGAACAGCTACCGCCTGCACTTT-C i rheMac2.chr11 n 1 C 0 s ponAbe2.chr12 326648 28 - 136387465 ACTGTAACAGATACCGCCTGCACTTTCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 283147 28 - 135371336 ACTGGAACAGATACCGCCTGCACTTTCC i panTro2.chr12 C 0 C 0 s equCab2.chr8 29862278 25 + 94057673 --TGGGACAAACACTGCCT-CCCTTTCC i equCab2.chr8 n 0 C 0 s oryCun2.chrUn0106 299995 18 - 1032594 ----------ATACTGCTTGTGCTTTCC i oryCun2.chrUn0106 n 137 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30025694 0 - 76506943 C e canFam2.chr26 3242550 1257 + 42029645 I a score=51128.000000 s hg19.chrUn_gl000223 158202 37 + 180455 TTCAGAAATCAGCAGT----AACAGCCCAGGCTGTTGGTTT s equCab2.chr8 29862303 36 + 94057673 CTCAGAA-TCAGCAGG----AACAGCCCAGGCCACAGGTTC i equCab2.chr8 C 0 C 0 s oryCun2.chrUn0106 300013 41 - 1032594 TTCAGAAGTCGATGGTGAGAGACAGCCCAGGCCATAGGCTT i oryCun2.chrUn0106 C 0 n 0 s papHam1.Contig534015 1545 37 - 6619 TTCAGAAATCAGCAGT----AACAGCCCAGGCTGCTGGTTT i papHam1.Contig534015 C 0 C 0 s rheMac2.chr11 134225705 37 + 134511895 TTCAGAAATCAGCAGT----AACAGCCCAGGCTGCTGGTTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 326676 37 - 136387465 TTCAGAAATCATCAGT----AACAGCCCAGGCTGTCAGTTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 283175 37 - 135371336 TTCAGAAATCAGCAGT----AACAGCCCAGGCTGTCGGTTT i panTro2.chr12 C 0 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30025694 0 - 76506943 C e canFam2.chr26 3242550 1257 + 42029645 I a score=57941.000000 s hg19.chrUn_gl000223 158239 66 + 180455 CCAAGGGGTAC--CTGAGGCAGACCCCAGT-------CCCTGTGGAACTGAGGAATCATGGAGGGGTTAAGGGCT s equCab2.chr8 29862339 66 + 94057673 CCAAGGGGAAA--TCAAGGCAAGTCTAAAT-------CCCTGCTGAGTTACGGAATCACGGACATGGCAAGGGCT i equCab2.chr8 C 0 I 55887 s oryCun2.chrUn0106 730561 75 + 1032594 ccagggagtgcagtggaggatggcccaagtaattgggccctgcaccccatgggagaccaggagaagtacctggct i oryCun2.chrUn0106 I 137 C 0 s papHam1.Contig534015 1582 58 - 6619 CCAAGGTGTAC--CTGAGGCAGACCCCAAT-------CCCTGCAGAACCGAGGAATCATGGAGGGGT-------- i papHam1.Contig534015 C 0 N 0 s rheMac2.chr11 134225742 58 + 134511895 CCAAGGTGTAC--CTGAGGCAGACCCCAAT-------CCCTGCAGAACCGAGGAATCATGGAGGGGT-------- i rheMac2.chr11 C 0 n 0 s ponAbe2.chr12 326713 66 - 136387465 CCAAGGGGTAC--CTGAGGCAGACCCCCGT-------CCCTGTGGAACTGAGGAATCATGGAGGGGTTAAGGGCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 283212 65 - 135371336 CCAAGGGGTAC--CTGAGGCAGACCCCAGT-------CCCTGCGGAACTGAGGAATCATGGA-GGGTTAAGGGCT i panTro2.chr12 C 0 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30025694 0 - 76506943 C e canFam2.chr26 3242550 1257 + 42029645 I a score=24445.000000 s hg19.chrUn_gl000223 158305 111 + 180455 CCAAAAGTTTgg--aggtggaggttgcagtgagccgagatcacgccactgcactccagccctggcaacaa---gagcgaaactccacctc--aaaaaaaaaaaaaaCTTTTG-------------------------------------AAAAAG s ponAbe2.chr12 326779 111 - 136387465 CCAAAAGTTggg--aggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggcaacaa---gagcgaaactctgcctc--aaaaaaaaaaaaaaCTTTTG-------------------------------------AAAAAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 283277 113 - 135371336 CCAAAAGTTTgg--aggcggaggttgcagtaagccgagatcacgccactgcactccagccctggcaacaa---gagcgaaactccacctcaaaaaaaaaaaaaaaaCTTTTG-------------------------------------AAAAAG i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 730636 135 + 1032594 cctgccatcggatcag--------cgcggtgcgtcg-------gccgcagcacgccggccgcggtggccattggagggtgaaccaacggc-----aaaaaggaagacctttatctctgtctctctctctcactgtccactctgcctgtcaaaaaa i oryCun2.chrUn0106 C 0 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 134225800 0 + 134511895 I e cavPor3.scaffold_248 315102 546 + 667635 I e bosTau4.chr17 30025694 0 - 76506943 C e equCab2.chr8 29862405 55887 + 94057673 I e canFam2.chr26 3242550 1257 + 42029645 I a score=87499.000000 s hg19.chrUn_gl000223 158416 102 + 180455 -------TTTTAAAGATGATGGTTATACTTAGTTACCTGAGTATTTGGCCTGATTATttggggaaata----aacctaaaatctgccaacccagaagacctcttcacaaaagt s oryCun2.chrUn0106 730771 107 + 1032594 taataataataaaAAATAGTGGCTATACACAATTACCTGGCTATTTTGCCTTCTGA--TGAGataatt----aaaaccaaatctgccaactcagaaaacctctttgctgaaat i oryCun2.chrUn0106 C 0 C 0 s rheMac2.chr11 284654 97 - 134511895 -------TTTTAAAAATAATGGTTATACTTAGTTACCCGATTATTTGGCCtg-----ttggggaaata----aacctaaaatatgccaacccagaagacctctccacacaagt i rheMac2.chr11 I 1 I 325 s ponAbe2.chr12 326890 102 - 136387465 -------TTTTAAAAATAATGGTTATACTTAGTTACCTGATTATTTGGCCTGATTATttggggaaata----aacctaaaatctgccaacccagaagacctctccacaaaagt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 283390 89 - 135371336 -------TTTTAAAGATAATGGTTATACTTAGTT-------------CCCTGATTATttggggaaata----aacctaaaatctgccaacccagaagacctcttcacaaaagt i panTro2.chr12 C 0 C 0 s equCab2.chr8 64194298 93 - 94057673 ---------------ATAGTGGTTGTACTCAGTTATCTGGTTATATGGCCtg-----ttggggaaataattaaaactaaaatctgccaacccagaaaacctttccacaaaagt i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30025694 92 - 76506943 --------TTTAAAG-TAGTAGTTGTATTTATTTATGTGGTTATTTGATTCT-----TTGTGGATACAGTTTAA--CAAA-----ccaatccagaaaacttctccacaaaaat i bosTau4.chr17 C 0 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e canFam2.chr26 3242550 1257 + 42029645 I a score=56828.000000 s hg19.chrUn_gl000223 158518 49 + 180455 agaaaat-aaagaaaaataattttattattgaataaaaattaaacGAggc s panTro2.chr12 283479 50 - 135371336 agaaaataaaaaaaaaataattttattattgaataaaaattaaacGAggc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 326992 49 - 136387465 agaaaat-aaagaaaaacaattttattattgaataaaaattaaacGAggc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 285076 49 - 134511895 agaaaat-aaagaaaaacagttttattattgaataaAAGTTCGACGAggc i rheMac2.chr11 I 325 C 0 s oryCun2.chrUn0106 730878 48 + 1032594 agaaaag-aaaggaaaataa-tttatcgttaaataaaaaccaaatcaggc i oryCun2.chrUn0106 C 0 I 1496 s bosTau4.chr17 30025786 44 - 76506943 agaagag-aaag---aatagttttattattgaataaaaattaaaccag-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64194391 47 - 94057673 agaagag-aaagaaaaatagttttattatttattaaaaactaagccag-- i equCab2.chr8 C 0 I 483 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e canFam2.chr26 3242550 1257 + 42029645 I a score=271410.000000 s hg19.chrUn_gl000223 158567 578 + 180455 cagacacaatggctcacacctgtagtcccagcactttggaaggccaaggccagtggatcacttgagcccaggagttcaaggccaacctgggcaataaggcaaaaccccgtctctacaaaaaatacaaaaattagctggggatggtggcgtacacctatagtcccagctactcaggaggctgttgtgggagaattcacctgagcccaggaaggttgaggctacggtgagccaagatcatgccactgcactccagcctgggtgacagagc-aagaccctgtctcaaagaaaaaaaTGTggccgggcgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacctgaggtcaggagttcgagactagcctggccaatatggtgaaaccccgactctactaaaaatacaaaaaaattggcca-ggcgtgatggtgggcacttgtaatcccagct---acttgggagtctgaggcagaagaatcg-------------cttgaacccaggaggcggaggttgcagtaagccgagatcatgccattgcactccagcctgggctacaacagcg----------------aaactctgcc s rheMac2.chr11 285125 573 - 134511895 cggacacggtggctcacacctgtagtcccagtactttgggagattgaggccagtggatcacttgagcccaggagttcaaggccaacctgggcaacaaggcaaaaccccatctctacaaaaaatacaaaaattagctgggtgtggtggcgcacacctgtggtcccagctactcaggcggctgaagtgagagaattcacgtgagcccaggaaggttgaggctgcggtgagccaagatcatgccactgcactccagtccgggtgac--agc-aagaccctgtctcaaa-aaaagaaTGTggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaatatggtgaaaccctgtctctactaaaaatac-aaaaaattagccg-ggcgtggtggc-ggtgcctgtaatcccagct---acttgggagtctgaggcaggagaatcg-------------cttgaaccctggagacggagtttgcagtgagccgagatcatgccactgcactccagcctgggctacaagagca----------------aaactgagcc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 327041 578 - 136387465 cagacacaatggctcacacctgtagtcccagcactttgggaggccaaggccagtggatcacttgagcccaggagttcaaggccaacctgggcaataaggcaaaaccccatctctacaaaaaatacaaaaattagctggggatggtggcgcacacctatagtcccagctactcaggaggctgtggtgggagaattcacctgagcccaggaaggttgaggctgtggtgagccaagatcatgccactgcactccagcctgggtgacagagc-aagaccctgtctcaaagaaaaaaaTGTggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcggatcacctgaggtcaggagttcgagaccagcctggccaatatggcgaaaccccgactctactaaaaatacaaaaaaattagccg-ggcgtgatggtgggcacctgtaatcccagct---acttgggagtctgaggcaggagaatcg-------------cttgaacccaggaggcagaggttgcagtgagccaggatcatgccattgcactccagcctgggctacaagagcg----------------aaactctgct i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 283529 578 - 135371336 cagacacaatggctcacacctgtagtcccagcactttggaaggccaaggccagtggatcacttgagcccaggagttcaaggccaacctgggcaataaggcaaaaccccgtctctacaaaaaatacaaaaattagctggggatggtggcgtacacctatagtcccagctactcaggaggctgtggtgggagaattcacctgagcccaggaaggttgaggctacggtgagccaagatcatgccactgcactccagcctgggtgacagagc-aagaccctgtctcaaagaaaaaaaTGTggccgggcgtggtggctcacatctgtaatcccagcactttgggaggctgaggtgggcggatcacctgaggtcaggagttcgagactagcctggccaatatggcgaaaccccaactctactaaaaatacaaaaaaattagcca-ggcgtgatggtgggcacctgtaatcccagct---acttgggagtctgaggcagaagaatcg-------------cttgaacccaggaggcggaggttgcagtgagccgagatcatgccattgcactccagcctgggctacaacagcg----------------aaactctgcc i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30025830 391 - 76506943 --aatgtgatgtc------------------cactttaga------------------------------------------caatctg-----------------------ctaaaaatattgcaagagacaggaagagatggtgtt--------------------------------------------cttttctgtagccatgcagg------------------------------------tacaacctgctagacagacctgcaacacagtcttaagggatcatctgt---------------cacacacagttcatcctaa-actt-----------------------acctga------tagttggaa-------tggctactgttttagctacttgctttcacccaaaggaaaaatacacttctcatgtctttatgatgggagttaat-tttccagcttggacctgggtgccacagtcaggccagtcaggctgctatcctcccagagaccaggagatagggatgt--gtctacctggatgatttcagag-acacctcctaggtccataagaaagacactgatgagttattaaacttagtt i bosTau4.chr17 C 0 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e felCat3.scaffold_2337 3610 1938 - 7911 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e oryCun2.chrUn0106 730926 1496 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e equCab2.chr8 64194438 483 - 94057673 I e canFam2.chr26 3242550 1257 + 42029645 I a score=-2877.000000 s hg19.chrUn_gl000223 159145 17 + 180455 tc---aaaaa-----aaaaccaa-----aa- s rheMac2.chr11 285698 25 - 134511895 tcttaaaaaa-----caaacaaacaaacaa- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 327619 22 - 136387465 tc---aaaaa-----aaaaaaaaaaaacaa- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284107 17 - 135371336 tc---aaaaa-----aaaaaaaa-----aa- i panTro2.chr12 C 0 C 0 s bosTau4.chr17 30026221 28 - 76506943 tt---agaaaagatttacgtacatcccaaag i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_2337 5548 23 - 7911 tc---aaaag-----taaatactttgcgaag i felCat3.scaffold_2337 I 1938 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e oryCun2.chrUn0106 730926 1496 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 315102 546 + 667635 I e equCab2.chr8 64194438 483 - 94057673 I e canFam2.chr26 3242550 1257 + 42029645 I a score=12957.000000 s hg19.chrUn_gl000223 159162 56 + 180455 ------aaaaa---caaGGGGGTGAATCTCTTTC-TGTATTTTGCA-----------TGAGGGAAAATT---AGGGATTT s panTro2.chr12 284124 59 - 135371336 ------aaaaaaaCCAAGGGGGTGAATCTCTTTC-TGTATTTTGCA-----------TGAGGGAAAATT---AGGGATTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 327641 59 - 136387465 ------aaaaaaaCCAagggggtgaatctctttc-tctattttgca-----------tgagggaaaatt---agggtttt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 285723 54 - 134511895 ------aaaaa----aCGGGGGTGAATCTCTTTC-TCTGTTTGGTA-----------TGAGGGAAAATT---AGAG-TTT i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 315648 50 + 667635 ------aaaag---cagtcaggtaagtgtctctc-tt--ttttgga-----------agagggaacatt---aggg---- i cavPor3.scaffold_248 I 546 C 0 s bosTau4.chr17 30026249 71 - 76506943 gggcagagaaa------gattt--tgtaattaca-cgttttctacagtaaatgctcttgaaatagggatctgaggggtct i bosTau4.chr17 C 0 C 0 s felCat3.scaffold_2337 5571 53 - 7911 ag---gagtca---------ggggagtctttttctctttttttgca-----------tgagggagaatt----aatattt i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64194921 42 - 94057673 --------------------ggggagtcgctctc-ccttttccgcc-----------cgagggagaatt------gatgt i equCab2.chr8 I 483 C 0 s canFam2.chr26 3243807 45 + 42029645 -----------------ggaagggactctctttc-ccttttctgca-----------tgagggagaact------cattt i canFam2.chr26 I 1257 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e tupBel1.scaffold_78714.1-13947 415 2343 - 13947 I e oryCun2.chrUn0106 730926 1496 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=169474.000000 s hg19.chrUn_gl000223 159218 191 + 180455 TTTCCTCCTTTTAAAT-CTATATTTGCCCTTCCAGGCCTGTGAGCA----CACATTCCCCTCGGGGTGTCAGCTG----CTCCCCCACGTGGTCT-GGAGATGCGCGTGAGGG--------AAGGGCTGAAGGCCAGGCTTTAGTCTCTGAAGCTTCTGATGAGTTGAAGCAGAGGGGCGCTCAGGGGC-CCAGGACAG--AGGGTAGA---CCT s rheMac2.chr11 285777 191 - 134511895 TTTCTTCCTTTTAAAT-CTATATTTGCTCTTCCAGGCCTGTGAGCT----CACGTTCCCCTCGGGGTATCAGCTG----CTCCCCCACATTGTCT-GGAGATGCGTGTTGGGG--------AAAGGCTGAAGGCCAGGCTTTAGTCTCTGAAACTTCTGATGATTTGAAGCAGAGGAGCGTTCAGGGGC-CCCGGACCA--AGGGGAGA---CCT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 327700 186 - 136387465 tttcctctttttaaat-ctatatttgcccttccaGGCCTGTGAGCA----CATGTTCCCCTCGGGGTGTCAGCTG----CTCCCCCACACAGTC---GAGATGTGCGTGAGGG--------AAGGGCTGAAGGCCAGGCTTTAGTCTCTGAAGCTTCTGATGAGTTGAAGCA---GGGCGTTCAGGGGC-CCAGGACCG--AGGGTAGA---CCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284183 191 - 135371336 TTTCCTCCTTTTAAAT-CTGTATTTGCCCTTCCAGGCCTGTGAGCA----CACGTTCCCCTCGGGGTGTCAGCTG----CTCCCCCATGTGGTCT-GGAGATGCGCGTGAGGG--------AAGGGCTGAAGGCCAGGCTTTAGTCTCTGAAGCTTCTGATGAGTTGAAGCAGAGGGGTGCTCAGGGGC-CCAGGACCG--AGGGTAGA---CCT i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 2758 154 - 13947 TTTTCTTATTCTTAAT-TTGTATTTGCCCTTTCAGATCTGTGAGCC----TGTGTTCTCC----AGGGTTACGTG----CTCTCCTGCATGCTCT-GGCAATACAGA----------------------------------------CTGAAATTTCCAGTGAGTTGAAGCAGAGGAAGGTGGAGGGGG-TTGCTAAT---AGTGTAGA---CCT i tupBel1.scaffold_78714.1-13947 I 2343 I 423 s cavPor3.scaffold_248 315698 182 + 667635 tttccttatttttagt-ttggttttgcacttgcaGACCTCTGAACT----CATACAGCCTGTGGGGTGTTTGCTG----CCCTGTCATGTGTTCT-GGTATTGTATACTGGGGGAGGGGGCAAAGGGTAAAGGCCAGTCCTTCATCTTTTGGACTTCTGAGGAGTTGGACCC------------AGGGC-TCAC-------AATGTAGA---TCA i cavPor3.scaffold_248 C 0 I 10 s bosTau4.chr17 30026320 157 - 76506943 ttttct-----------ttttgttcaCCCTCACAGA-CTCTGAGCT-----GGATCACCCTAAAGGTGTTATCTGTCTACTCTCCT----GCTCC-AGTAA-TTGTATTAGAG--------AAGGGCTG-AGACCAGGCCT-----------------------TGGAAGCAGAGGGGAGGGAAGGGGCCCCAGGGCCAGCAGTGTTGA---CCT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64194963 163 - 94057673 ttttctcatttttaat-ctgcatttacctttccaGGCCTCTGCGCT----CCTACTCCCCCAGAGGTGTTGGCTG----CTCT-------GCACA-GCGAATTTGCCTTAGGG--------AAGGGCTG-AGGCGAGGCCT-----------------------TTGAAGCAAAAGGGAGGGAAGGGGCCCCAGAGCCAACAGTGTGGC---CCC i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 5624 168 - 7911 ttttcttagttt-----tagtatttgcctttacTGGCCTCTGAGCTCATGCATATTCCTCTAGA-GTGTTAGCTG----CTCTCCTGC--ACTCTGGGTAATTTGCCCTAGGG--------GAGGGCTG-AGGCTGCACCT-----------------------TTGAaggggaggggaggggaggggCGCCAGGGCCGACAACGTGGA---TCC i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3243852 146 + 42029645 gttatctagtttttatgttatgttcacccttacTGGCCTCTGAGCT----CATATTCCCCCAGAGGTGTTAGCTG----CTGTCCCACGAGCTCT-GGTGACCTGCGCTCGGG--------AAGGGCT----------------------------------------------------GGGAAGAGCACCGGCGCCAGCACCGCAGACAGCCC i canFam2.chr26 C 0 C 0 e myoLuc1.scaffold_85199 323 1070 + 3245 I e oryCun2.chrUn0106 730926 1496 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-39581.000000 s hg19.chrUn_gl000223 159409 77 + 180455 -----------GGGAATTGTGCCCCCTCTTCCAGCTGTGAGCTGCCCCCACTCTGGGCAGCTTGT--------GAGTTGCCACTCCCGCAA-CTCCC s panTro2.chr12 284374 77 - 135371336 -----------GGGAATTGTGCCCCCTCTTCCAGCTGTGAGCTGCCCCCACTCTGGGCAGCTTGT--------GAGTTGCCATTCCCGCAA-CTCCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 327886 77 - 136387465 -----------GGGAATTGTGCCCCCTCTTCCGGCTATGAGCTGCCCCCACTCCAGGCAGCTTGT--------GAGTTGCTACTCCCGCAG-CTCCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 285968 68 - 134511895 -----------GGAAATCGTGCCCCCTCTTCCAGCTGTGAGCTGCCCCCATTCCGGGCAGCTCGT--------GAGTTGACA----------CTCCC i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 315890 64 + 667635 -----------AGAAACCAT---CCATGTTC------------ACCACCCTTCTAAGTGGCTTGTCTGATC-AGAGTGGGAGGTCCTTGGA------ i cavPor3.scaffold_248 I 10 I 42 s bosTau4.chr17 30026477 69 - 76506943 CA--GAACCATTGG-ATAGCCC---------------CATATCACCCCCTCTGCAAGCAGCTCTTCTGAGCAGGGACCAGAGAC-------CTT--- i bosTau4.chr17 C 0 I 29 s equCab2.chr8 64195126 73 - 94057673 TGTAGACTCACTGGGACAGCCC-------------TGTGTCCCACCACCCC--------TCCCAGGAGCTCCTCAGTCGGGGATCAGAGAGCCT--- i equCab2.chr8 C 0 I 25 s felCat3.scaffold_2337 5792 67 - 7911 TGCAGAA-CAC----ACAGTGC---------------TGTCCCACCACCCCCTCAAGCATCTCCTGCCGTCAAGGGTCGGAGAC-------CCT--- i felCat3.scaffold_2337 C 0 I 19 s canFam2.chr26 3243998 48 + 42029645 TG-----------------------------------TGTCCCACCGCCCCATCAGGCATCTCTAGTC----AGTGACGTAGAC-------CCT--- i canFam2.chr26 C 0 I 25 e myoLuc1.scaffold_85199 323 1070 + 3245 I e tupBel1.scaffold_78714.1-13947 2912 423 - 13947 I e oryCun2.chrUn0106 730926 1496 + 1032594 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=29238.000000 s hg19.chrUn_gl000223 159486 78 + 180455 AGCCCTG----GGATGCTGGAG-GCAGGAGGTCAGA-AAATACCCAAAGAACAGCA--GCAGC------CTTTACCCCTCCA-TGATTCCTCA s panTro2.chr12 284451 78 - 135371336 AGCCCTG----GGATGCTGGAG-GCAGGAGGTCAGA-AAATACCCAAAGAACAGCA--GCAGC------CTTTACCCCTCCA-TGATTCCTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 327963 78 - 136387465 AGCCCTG----GGATGCTAGAG-GCAGGAGGTCAGA-AAATACCCAAAGAACAGCA--GCAGC------CTTTACCCCTCCA-TGATTCCTCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 286036 78 - 134511895 AGCCCTG----GGATGCTGGAG-GCAGGAGGTCAGA-AAATACCCAAAGAACAGCT--GCAGC------CCTTACCCCTCCA-TGATTCCTCG i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 315996 74 + 667635 AGCCCTG----GGACGCTAG-A-GCAG--GATGAGTCAGATGC----AAAGCAGCTACATAGT------CTTTGCTGTTTCT-TGGCTCCTTA i cavPor3.scaffold_248 I 42 C 0 s oryCun2.chrUn0106 732422 79 + 1032594 AGCCCCC----AGTTCCTGG-G-GTAGAAGATGAGT-AAATGCCC-AAAGGCAGCTGGGCATC------TCTTACCGTTTCCATGGTTTCTTA i oryCun2.chrUn0106 I 1496 C 0 s bosTau4.chr17 30026575 77 - 76506943 ----CTAGG--GTACATGGGAAGGTGGGAGATGCAA-ATGTCCCTGAAG---------GCAGCTGGGAGCCTTGCCAGTTCTATGATGCCTAA i bosTau4.chr17 I 29 C 0 s canFam2.chr26 3244071 48 + 42029645 TGTCCTTGGG-GCACAGAGGAGTGTGGGAGATGAGG---------AAGG---------GCAGC------TCTT-------------------- i canFam2.chr26 I 25 C 0 s felCat3.scaffold_2337 5878 50 - 7911 CGTCCTT----GTACGGAGGGCTGTGGGAGGTGACG---------AAGG---------GCAGC------CCTTGTCAT--------------- i felCat3.scaffold_2337 I 19 C 0 s equCab2.chr8 64195224 71 - 94057673 GTCCCTG----GTGCGGAGGGC-GTGGGCGATGAGT-AGA-GCCCAAAG---------GCAGC------CCTTGCCATGTCCGTGATTCCGTA i equCab2.chr8 I 25 C 0 s myoLuc1.scaffold_85199 1393 84 + 3245 AGCCCTGGGGAACTGAGAGGAG-GTAAGAGATGAGT-AAACCCCCAAGG-GCAGCTGAGCAGC------CCTTGCCATTTGCATGGTTTTCTT i myoLuc1.scaffold_85199 I 1070 C 0 e tupBel1.scaffold_78714.1-13947 2912 423 - 13947 I e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=37095.000000 s hg19.chrUn_gl000223 159564 46 + 180455 GTTCCACA---GGGACT----GGGGTCTGCCTCA-GGTA-CC-CCTTGGAAAC--C---GG s rheMac2.chr11 286114 46 - 134511895 GTTCTGCA---GGGATT----GGGGTCTGCCTCA-GGTA-CA-CCTTGGAAAC--C---AG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 328041 46 - 136387465 GTTCCGCA---GGGACT----GGGGTCTGCCTCA-GGTA-CC-CCTTGGAAAA--T---GG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284529 46 - 135371336 GTTCCACA---GGGACT----GGGGTCTGCCTCA-GGTA-CC-CCTTGGAAAC--C---AG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3335 48 - 13947 GTCCCATAGCCGGGATT----TTGATCTGCCTCA-GTTG--C-CCTTAGTAAC--C---TG i tupBel1.scaffold_78714.1-13947 I 423 C 0 s otoGar1.scaffold_120608.1-43992 4185 33 + 43992 ------------------------GTCGGTCTCA-GTTACCC-CCTTGGAAAC--CTATTA i otoGar1.scaffold_120608.1-43992 N 0 C 0 s cavPor3.scaffold_248 316070 50 + 667635 ACTTAGAA---AGGGTTTTGATTGATCTACCTGA-AGTT-TC-CCTTGGAAAC--A---GG i cavPor3.scaffold_248 C 0 I 195 s oryCun2.chrUn0106 732501 46 + 1032594 ACTCAGCG---GGGATT----TTGATCTGCTGTA-GGTG-CA-CTCTGGAAGC--C---TA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30026652 47 - 76506943 ACTCAGCA---GAGATT----TTGATCTGTCTCCTGTCA-CC-CCTTGGGAGCCCA----- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3244119 38 + 42029645 ------CG---GGGATT----TTGATCTGCCTCC-ATTA-TG-CCTTGGAAAT--G----- i canFam2.chr26 C 0 C 0 s felCat3.scaffold_2337 5928 44 - 7911 -CTCTGCG---GCCCCT----TCACTCTGCAGGG-ATTT-TGATCTTGGAAGC--G----- i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64195295 46 - 94057673 ACTCAGCA---GGGATT----TAGACTTGCCTTG-ATTT-CC-CCTTGGGAACCTG----- i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_85199 1477 43 + 3245 AATTCACC---TGGAGT----TTGATCTGCCCCA-ATTA-T--CCCTAGAAAC--C----- i myoLuc1.scaffold_85199 C 0 C 0 e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=-18331.000000 s hg19.chrUn_gl000223 159610 16 + 180455 CAG----CTGGG--------------CTG-----TTACT s myoLuc1.scaffold_85199 1520 16 + 3245 ---TGTCTGGGG--------------CTG-----TT-CT i myoLuc1.scaffold_85199 C 0 C 0 s equCab2.chr8 64195341 17 - 94057673 ---TGGCCTGGG--------------CTG-----TTCCT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 5972 17 - 7911 ---TGGCCTGGG--------------CTG-----TCCCT i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3244157 16 + 42029645 ---TGGCCT-GG--------------CGG-----TTCCT i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30026699 16 - 76506943 ---TGGCCTGGG--------------CTG-----TT-GT i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 732547 21 + 1032594 TGG----CCTGGG-------------CTGTCTC-TCACC i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 316315 34 + 667635 tag----ctggggtaacctgccatgcctggctA-CTACT i cavPor3.scaffold_248 I 195 C 0 s otoGar1.scaffold_120608.1-43992 4218 21 + 43992 CAA----CTGAT--------------TTATTTATTTACA i otoGar1.scaffold_120608.1-43992 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3383 15 - 13947 AGC----CTGTG--------------CTA-----TTCC- i tupBel1.scaffold_78714.1-13947 C 0 C 0 s panTro2.chr12 284575 16 - 135371336 CAG----CTGGG--------------CTG-----TTACT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 328087 16 - 136387465 CAG----CTGGG--------------CTG-----TTACT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 286160 17 - 134511895 CAGC---CTGGG--------------CTG-----TTACT i rheMac2.chr11 C 0 C 0 e loxAfr3.scaffold_113 144089 0 - 3408981 C e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=96834.000000 s hg19.chrUn_gl000223 159626 27 + 180455 GCTGATTTCTGAAGGAAAGTGCAGGCA s rheMac2.chr11 286177 26 - 134511895 GCTGATTTCTGAA-GAAAGTGCAGGCG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 328103 27 - 136387465 GCTGATTTCTGAAGGAAAGTGCAGGCG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284591 27 - 135371336 GCTGATTTCTGAAGGAAAGTGCAGGCG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3398 25 - 13947 --TGACATCTGGGGAAAAGCACTGGCA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s otoGar1.scaffold_120608.1-43992 4239 20 + 43992 AGTGATCTTTGAA-------TTAGGCA i otoGar1.scaffold_120608.1-43992 C 0 C 0 s cavPor3.scaffold_248 316349 27 + 667635 GTTAATTTCTTGGGAAAAGTACAGGTA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 732568 27 + 1032594 ATCGACTTCTGAAGGAAAGCACAAGCA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30026715 26 - 76506943 GCTGGTTTCTGAGGG-AGGAGCAGGCA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3244173 27 + 42029645 GCTGGTTTCTCAGGGGAAGGACACGTA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_2337 5989 27 - 7911 GCTGGCTTCTGAGGGAAAGGGCAGGCG i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64195358 25 - 94057673 GCTGA-TTCTGAGGGAAAGGG-AGGCA i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_85199 1536 27 + 3245 GCTGGTTTCTGAGGGAACAGGTGGGCA i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 144089 27 - 3408981 GCAGATTTCTGAGGGGAAGGGCAGGCA i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=62385.000000 s hg19.chrUn_gl000223 159653 56 + 180455 GTATCTG-TTCCGGTGTGAACTGGGGAAGAGGCAACATAAGACATTCCCT---GCCTTG-T s rheMac2.chr11 286203 56 - 134511895 GTAGCTG-TTCCAGTGTGAACTGGGGAAGAGGCAACATACGACACTCCCT---GCCTTG-T i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 328130 56 - 136387465 TTATCTG-TTCCGGTGTGAACTGGGGAAGAGGCAACATAAGACATTCCCT---GCCTTA-T i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284618 56 - 135371336 GTGTCTG-TTCCGGTGTGAACTGGGGAAGAGGCAACGTAAGACATTCCCT---GCCTTG-T i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3423 60 - 13947 GCATCCG-TCCTAACATGAATGGAGAAGGAGGCAACACCAATGATTACCTTCAGCATCGCT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s otoGar1.scaffold_120608.1-43992 4259 58 + 43992 GTATTTG-TCCCAGTGTCAACTTAGGAAGAGATAACATAAAAGATTTCTTT-AGACTTC-T i otoGar1.scaffold_120608.1-43992 C 0 C 0 s cavPor3.scaffold_248 316376 56 + 667635 GCATGTG-TCCTAGTGTGAGGTGAGAAAGAAGCAATATAAAG-ATTTCCTTAAACCTT--- i cavPor3.scaffold_248 C 0 I 110 s oryCun2.chrUn0106 732595 39 + 1032594 GTATGTG-TC--AGTGTGAACTGAGGAAGACGCAACGTGAGA------------------- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30026741 49 - 76506943 GTGTTTG-CCCGAGCGTGAGGTCAGAAAGAAAGGATGGTAAAGGTTCCTT----------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64195383 48 - 94057673 GTGTTTG-TCCCAACCTGAGCTGAGGAGGAAGCACTGTGA-GAGTTTCCT----------- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6016 45 - 7911 GT-TTTG-TCCCGGCGAGCACC-AAGAGGCACCACGGGGA--AGTTTCCT----------- i felCat3.scaffold_2337 C 0 C 0 s myoLuc1.scaffold_85199 1563 50 + 3245 GTGTCTGCCCCCAGCGTGAGCCCAGAAAGAAGCAACATTACAGGTTTCCT----------- i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 144116 56 - 3408981 GTATTTG-TCCCAAGGTGGGGTGAGGAAGAAGCAACAGAAAAGCTTTCCTTAGACTT---- i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3244200 0 + 42029645 C a score=1876.000000 s hg19.chrUn_gl000223 159709 58 + 180455 GTCTTGCTGCGCCCTCTGGCTCCCATCTGCTGTAGGC--TGCAGCCAGGCC-CTGCTCAGC s rheMac2.chr11 286259 58 - 134511895 GTCTTGCTGCCCCCTCTGGCTCCCATCTACTGTAGGC--TGCTGCCAGGCC-CTGCTCAGC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 328186 58 - 136387465 GTCTTGCTGCCCCCTCTGGCTCCCGTCTGTTGTAGGC--TGCAGCCAGGCC-CTGCTCAGC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284674 58 - 135371336 GTCTTGCTGCGCCCTCTGTCTCCCATCTGCTGTAGGC--TGCAGCCAGGCC-CTGCTCAGC i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3483 56 - 13947 CTCTTGCTGCCTCC-CTGACAACCACCTG-TGCCGGC--TACAGCCAGGTT-CTGCTCGGC i tupBel1.scaffold_78714.1-13947 C 0 C 0 s otoGar1.scaffold_120608.1-43992 4317 46 + 43992 GTCTAACTG-------------CCATCCACTGTAGACATTGCAG-CAAGCC-CTGCTGAGC i otoGar1.scaffold_120608.1-43992 C 0 C 0 s cavPor3.scaffold_248 316542 58 + 667635 GTCTTGCAGTACCCTCTGCCA-CCACCTGTTACAGGC--TGAAGCTATGGCTCTACTCAGT i cavPor3.scaffold_248 I 110 C 0 s oryCun2.chrUn0106 732634 50 + 1032594 GTTTTCCTTAGGCCTCTTACC-CCTCT-------GGC--TGCTGCCAGAGC-CGGCTTGGC i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30026790 31 - 76506943 --------------TAGGCCTCTCTTCT--TGTGGTG--T------------CTACTCTGG i bosTau4.chr17 C 0 I 27 s equCab2.chr8 64195431 33 - 94057673 --------------CAGGCGTCTCTCCTGCCGGCCGC--T------------CTGCTCACT i equCab2.chr8 C 0 I 20 s felCat3.scaffold_2337 6061 33 - 7911 --------------CATGCCTCCTCGCTGTCGTGGAT--G------------TGGCTCCCC i felCat3.scaffold_2337 C 0 I 10 s myoLuc1.scaffold_85199 1613 27 + 3245 --------------TAGGCCTC-TTGCTGCC-----T--T------------CTGCTCTAG i myoLuc1.scaffold_85199 C 0 I 6 s loxAfr3.scaffold_113 144172 54 - 3408981 --CTCGGTGCCTC-TCTGGTT-GCAAGTGTTCTAGGC--TGCAGCCAAACC-CTGCTTAGC i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e canFam2.chr26 3244200 0 + 42029645 C a score=161370.000000 s hg19.chrUn_gl000223 159767 107 + 180455 CTCAGACCCACG-C-------CTCAGCTCCACCCCAGCCTGCGTC---TGCCCAGGGGTGTC---TGTTTTTCTTTTTTTACTCTTA-CATTAGTTCCTCTGATCTATGTTTTCCTTTTGTT s rheMac2.chr11 286317 107 - 134511895 CTCAAACCCATG-C-------CTCAGCTTCACCCCACCCTGCGTC---TGCCCAGGGGTGTC---TCTTTTTCTTTTTTTACTCTTA-TATTAGTTCCTCTGATCTATGTTTTCCTTTTGTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 328244 107 - 136387465 CTCAAACCCACG-C-------CTCAGCTTCACCCCAGCCTGCGTC---TGCCCAGGGGTGTC---TGTTTTTCGTTTTTTACTCTTA-TATTAGTTCCTCTGATCTATGTTTTCCTTTTATT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284732 107 - 135371336 CGCAAACCCACG-C-------CTCAGCTCCACCCCAGCCTGCGTC---TGCCCAGGGGTATC---TGTTTTTCTTTTTTTACTCTTA-TATTAGTTCCTCTGATCTATGTTTTCCTTTTGTT i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3539 98 - 13947 CCAGAAACTGCA-T-------AGCA-CTGTACCGTGGCCCACTCT---CTCCTCTAGGAGTT---TGTCTTTTTCTTTC---------TATTCATTCCTTGGATAAGTGCTTTCCTTTTATT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s otoGar1.scaffold_120608.1-43992 4363 107 + 43992 CCCCAACCCAGA-C-------ACCAACCTTACCACAACCTG-GTC---TTCCCTGGTGTCTC---TTTTCTCTTTTTCTTACTATTACTATTGATTCCTTTGATCTATGCTTTTCTTTTGTT i otoGar1.scaffold_120608.1-43992 C 0 C 0 s cavPor3.scaffold_248 316600 90 + 667635 CTCAGACCCA-A-C-------ATAAACT------AACCTTGCAGT---CTCCCGAAAGATTA---TCTGTTTCATTC-----------CATTTGTTTTTCTGATTCATGTTTTTCTTTTGTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 732684 85 + 1032594 CCCAGGCCTACA-C-------ATTAACTTCAGCACAGCCTGCAGC---CTCTCTTGAGCTTA--------------C-----------TATTAGTTCCGCTGATCGGTG-TTTTCTTTTGTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30026848 104 - 76506943 CCCACACCCAAG-T-------GTCAGCTTCCCCAAGGCCT--GTC---TCCCCTGAGGTCTCATACCTTCTTTTGGC----CATTTC-TTTTAGTTCCTCTGATCTGTGCTTTCCTTTGGCT i bosTau4.chr17 I 27 C 0 s equCab2.chr8 64195484 85 - 94057673 -------------C-------GCCTCCCGCA-----------GCCTGCGCCCCCGGGGTCTC----CTCCTGTCTGT-GTGCGTTTC-TGTGAGGTCCTCGCATCTGTGCCTGCCTCTTGCT i equCab2.chr8 I 20 C 0 s felCat3.scaffold_2337 6104 90 - 7911 CTCAGACCCACA-C-------GGGAGCCTTA-----------GTCT--TCCCCCAGGGCCTC---TCTTC---TTAC----TGTTTC-TGTTAGTTTCTCTGATCTAGGCTTTCTTTCCACT i felCat3.scaffold_2337 I 10 C 0 s canFam2.chr26 3244200 86 + 42029645 ------CCCACA-C-------ACAAGCCTCA-----------GTC---TCCTCCGCGGCCTC---TCTTCTTTTTAC----TATTTC-TGTTGGCTCCTCTGGTCAAGGCTTTCCTTTTGTT i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 1646 101 + 3245 CACATGCCTGTGCC-------GTCAGCTTCACCACCG-CT--GTC---TCCCCCGTGGTCTC---TCTTCCTGCTGC----TCTTTC-TGTTGGTTCCTCTGATCTCTGCATTCCTTTTGCT i myoLuc1.scaffold_85199 I 6 C 0 s loxAfr3.scaffold_113 144226 107 - 3408981 CCCAAACCCACG-CTTAGGCAGTTAGCTTCACCACAGCTGCAGTC---TCACCTGGGGTCTC---TGTTTCCTCTTA------TTAC-TGTTACTTCCTCC-ATCTATGCTTTCCTTTTGCC i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=570209.000000 s hg19.chrUn_gl000223 159874 213 + 180455 CCTGGGCTGAT------------------------------------CCATCTCCGTCTAAA-----GTCCATTTTCTGTTTACCACCCTGCCTAGAAGTAAGTTGGCGTTTTACTCTGTAGCACTTAACACAAG-TA----ATTT------GATTTAGGTGCCTC----CAGGAAGTATTGCTGCCAAATGGATAAGTCCTCATGGCATTTCCAGAGCTTCATGATGTCTGTGCTGAGCAGTCTAGGGT-----------------------------------------AGTGG--TGCTCCTCTG-GAGG-- s rheMac2.chr11 286424 244 - 134511895 CCT-GGCTGATTTGGGGGTAGGGAGCCAGA-ACCCCAGGCTGATTCACCATCTCCATCTAAA-----GGCCATTTTCTGTTTACCACCCTGCCTAGAAATAAGTT-GCATTTTACTCTGTAGCACTTAACACAAA-TA----ACTT------GATTTAGGTACCTC----CAGGAAATATT-CTGCGGAATGAATAAGCCCTCATTGCATTTCCAGAGCTGCAGGATGTCTgtgctgagcagctcggtgt-----------------------------------------gg-gg--tgctcctctg-gagg-- i rheMac2.chr11 C 0 I 674 s ponAbe2.chr12 328351 247 - 136387465 CCTGGGCTGATGTGGGGGTAGGGAGCCAGA-ACCCCGGGCTGTTTCACCATCTCTGTCTAAA-----GTCCATTTTCTGTTTACCACCCTGCCTAGAGATAAGTT-GCATTTTACTCTGTAGCACTTAACACAGG-TA----ATTT------GATTTAGGTGCCTC----CAGGGAATATTGCTGCAGAATGAATAAGCCCTCATGGCATTTCCAGAGCTTCGTGATGTCTGCGCTGAGCAGTTTGGGGT-----------------------------------------AGTGG--TGCTACTCTG-GCGG-- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 284839 211 - 135371336 CCTGGGCTGAT------------------------------------CCATCTCCGTCTAAA-----GTCCATTTTCTGTTTACCACCCTGCCTAGAAGTAAGTT-GCGTTTTACTCTGTAGCACTTAACACAAG-TA----ATTT------GATTTAGGTG-CTC----CAGGAAGTATTGCTGCCAAATGGATAAGTCCTCATGGCATTTCCAGAGCTTCATGATGTCTGTGCTGAGCAGTCTGGGGT-----------------------------------------AGTGG--TGCTCCTCTG-GAGG-- i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_504284 404 209 - 1071 CCCAGGCTAAT---------------------------------TCAGTATCTTGATCTAAA-----AGCCATTTTCTGTTTACCATCCTGCCTAGAAATGAGTT-GCACTTTCCTCTGTGGCACCT-ATGCAAA-TA---------------ATCTAAGTGCCCC----CAAGAAATATTGCTGCAGTATGTGTAAGCTATCATTGTATTTACAGAATCTCTGGATGTGTCTGCTGAGTAGTTTGATGT-----------------------------------------AGTGG--TGCTCGCCTC-GGAG-- i tarSyr1.scaffold_504284 N 0 C 0 s otoGar1.scaffold_120608.1-43992 4470 210 + 43992 CTAGCACTTTT-----GGTAAGGAGCCAAA-AGCCTGGACTAATT--CAGTCTTGATCTAAA-----AGTCATTTTTTTGT----------------------TT-GCATTTTACTCAGTAGCAACT-ATGCAAA-TA---------------ATTTGGGTG-CCC----TGGAAAATACTACAGCAGAATGAATAAGACATCATTGTATTT-CAGCATTTCTTGAGGTCTCTGCTGAGCAGTTTGGTGT-----------------------------------------GGTAG--TGCTTTCCTA-GGGG-- i otoGar1.scaffold_120608.1-43992 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3637 206 - 13947 -CCCAGCTGACTTGGTGGTAGGGAGCCAAGTATTCTAAGC-------CCGTC-----------------CGGTGTTTTATTTACCACCCTGCTTAGATTGTAGTT-GTGTTTTCCTACATAGCACTG-ACACAGA-CC----CTTT------TGTC-GTGTG-CCC----CAGGAAA---CGCTGTGGAACGAGTGAGTCAGCGTTGCAATTACAGAACCTC----TGTCTCT-CTGAGCAGTGCGGTAT-----------------------------------------AG-----------GCTG-GC---- i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 316690 255 + 667635 CCAGGGCTTATTTGGAGGTAGGGAGCCAAC-CTACTACGCTAATGAAACATTTCCATTTAAT-----AGCCATTTTATATTTACCATACTGCCTAGGAATGAGTT-ACATTTTTACTTACAGCATCT-ATGCCAA-TT----ATTTCATGTAAATTAATAATCCCCCCATCAGGGACCATTGCTATAGAAAGGATGAATTGTTATT--ATTTCCAGACTTTCTTGATGTCTCTGTAGAGCAGTTTGGTGC-----------------------------------------AGTGGTGTGCTTGCTAG-GAG--- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 732769 241 + 1032594 -TAGGGCTTATTTGTGCATATGGAGCCAAC-TTCCAAAGATGGTTTTTCGTCTTAGTCTAAA-----TGCCGTTTTCTGTTTACCAT----CCTGGAAAGTAGCT-GTGTTTTGCTCTGTAGCTCCT-GTGCAAA-TA----ACTT------AATCAGTGTGCGCC----CAGGAAATAGTGTTGCAGAATAAGAGAGCCGCCATTGCACTTCCTGAATTTCTCAGTGTCTCTGCAGATAGGCTTAG-GC-----------------------------------------TG-GGAAAGCTCCCCAGTGAG--- i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30026952 244 - 76506943 CCAAGACTGATTTTGGAGTAGAGGGCCAGC-ACCCCAGGATGCTTCTCCATCTTGATCTAAA-----AGCTCTTTCCTGTCCCCTATCTTGCCTGGAAGTGAGTT-GCATTTTATTCTGTAGCACCA-GTGCCAG-GC----ATTT------CATTTAAGTGCCCT----CGGGAAAAGATGCTGCAGGGTCAGTGAGCCAGGACTGTCTTTCCAGACTTTATTGCTGCCCCTGCAGAATGGTTTCAAGT-----------------------------------------GTT-A--GGCTCC-CCT-GGAG-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64195569 242 - 94057673 GTGGGGCAGGTTTTGGAGTGGAGAGCCAGC-ACCCCAGGCTCCTTTACTGTCTTGATCTAAA-----AGACATTTTCTATTAACCGTCCTGCCTGGAAATGAGTT-GCCTTTTGTTATCTAGCACCT-GTGCAGG-CA----ATTT------CATTTAAGTGACCC----CAGGAAATA---TTACAGGAGGAGTGAGCCAGGACTGTATTTGCAGACTGTGGTGAGGTGTCTGCAGAGCGGTTTGGTGT-----------------------------------------GCTGA--TGCTCC-CTG-GGCG-- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6194 223 - 7911 GCAGGGCTGGTTTTGGAGTAGAAAGCCAGC-ACCCCAGGCTGCTTCACCGTCTTGGTCTAAC-----AGCCATTTTCCCTTTACCATCCTGCCTAGAGATAAGTT-GCATTTTACTCTGTAGCACCT-G-------------------------------TGTCCC----CAGGAAATACTGCTGCAGAGTGAACGAGCCCAGGTTATGTTCCTGAACTTTGTTGA--CCTCTGCAGAGCAT-TTGGTGG-----------------------------------------GGTGA--CGCTCCTCTG-GGGA-- i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3244286 244 + 42029645 CCTGGGCTAATTTCGGAGTAGGGAGCTAGC-ACCCCAGGCGACTTCATCATCTTGATCTAAA-----AGGCGTCTTCTGTTTACCATCCTGCCTAGAAATGAGTT-GCATTTTACTCTATAGCACCT-GCCCCAA-GA----ATTT------CATGTAATTGCCCC----CCAGAAATACGGCTGCAGAATGAGTGAGCCAGGGTGCTATTTCTGGATTTTGTTGA--TGTCTGCAGTGCATCTTGGTTT-----------------------------------------GATGA--TACTCCTCTG-AGGG-- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 1747 271 + 3245 CTATGGCTGAATTTGGAGTAGAGAGCCAGC-A-CCCAGGCTACTTCCCCATCTTGATCTAAA-----AGCCAG-TTCTGTTTACCATCC---------------T-GCATTTTACACTGTGGCACCT-AAGCAAGTAA----ATTT------GATTTAAGTGCCCC----CAGGAAATGTTGCTGCAGAAGGAGAGAGCCAAGATTGTATGTTCAGGCTTTACTGAGGTCTCTGCAGAGAGTTCTGGGgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgATGGGGAAGGGATGG--GGGTGGTCCA-GGTT-- i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 144333 257 - 3408981 CCAGGGCTGATTTGGGGGAAGGAAACCAGC-ACCCCAGGCTAATCCACCACTTTCATTTTGATCTTTACCCCTTTTTTGTTTACCATCTTGTCTAGAAGTGAGTT-GAACTTTACTCCATAGCATCC-TTGAAAA-TAATGTATTT------CATTTAAGTGTCCC----TAGGAAATATTGCTGGAGAATGAGTGAGCCATCATTGTATTTCCAGAATTTCTTGATGTCCTTGCAGAGCGGTTTGGTGT-----------------------------------------GGTGG--TGCTGCCCAG-TGCGGG i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=139413.000000 s hg19.chrUn_gl000223 160087 136 + 180455 TGTCTGCTTGAACCAGCCAGGGGAGTGGTTTCCATCTGGCATT-TATGGGT-GGAGCCGGGGCTGTTC-------------------------------------------------AGTTCCGTG-----------------------------------------------------------------------CGTACTGCAGA--CC----TG-------GCCTAGATGC--------------------------------------------------------------------------------------------------AGGTCAGACCC----------------------GACGGAGACGTG--CTAGTAGCTCACA s panTro2.chr12 285050 136 - 135371336 TGTCTGCTTGAACCAGCCAGGGGAGTGGTTTCCATCTGGCATT-TATGGGT-GGAGCCGGGGCTGTTC-------------------------------------------------AGTTCTGTG-----------------------------------------------------------------------CGTACTGCAGA--CC----TG-------GCCTAGATGC--------------------------------------------------------------------------------------------------AGGTCAGACCC----------------------GACGGAGACATG--CTAGTAGCTCACA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 328598 136 - 136387465 TGTCTGCTTGAACCAGCCAGGGGAGTGGTTTCCATCTGGCATT-TATGGGT-GGAACCAGGGCTGTTC-------------------------------------------------AGTTCCGTG-----------------------------------------------------------------------TGTACTGTAGA--CC----TG-------GCCTAGATGC--------------------------------------------------------------------------------------------------AGGTCAGACCT----------------------AATGGAGACATG--CTAGTAGCTCACA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 287342 136 - 134511895 tgTCTGCTTGAACCAGCCGGGTGAGTGGTTTCCATCTGGCATT-TATGGGT-GGAGCCAGGGTGGTTA-------------------------------------------------AGTTCAGTG-----------------------------------------------------------------------TGTGCTGTAGA--CC----TG-------GCCTAGATGC--------------------------------------------------------------------------------------------------AGGTCAGACCC----------------------GATGGAGACATG--CCAGTAGCTCACA i rheMac2.chr11 I 674 C 0 s tarSyr1.scaffold_504284 613 135 - 1071 TGTTTGCTTGAACCAGTGTGGTGAGTGGCTTCAATCTGGCATT-TATGGTG-GGAGCCAGGGTTA-TA-------------------------------------------------AGTACAATG-----------------------------------------------------------------------TGTGGTACAGA--CC----TG-------GCCCAGATGC--------------------------------------------------------------------------------------------------AAGTTGGACTC----------------------AATTGAGATGTG--CTAGTAGCTCATC i tarSyr1.scaffold_504284 C 0 C 0 s otoGar1.scaffold_120608.1-43992 4680 387 + 43992 TGTTTGCTTGAACCAGTGAGGTCAGTGTCTTCAATTT-GCATT-TGTGGTTAGGAGCCAGGATTATTtcttttatttatttatttttgagacagtttcactttgtcacccttggtagagtgccgtggcgtcacagttcataacaacctcaaactcttgggctcaagtgattctcttgtctcagcctctcaagtagctgggactatagattcc----tgccacaatgcccagatacttttagagacaagagctcactctggctcaggctggtcttgaacctgtgagctgcggcatcccagaatgttaagattacaggcgtgagcctgtgcacctggGCCAGAGCCAGGGTTATTAAATGCAGTATGTGGTGCAGACCTGGCCCAGCAGCTGAGA i otoGar1.scaffold_120608.1-43992 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3843 118 - 13947 ------CCTGAGCCAAGGTAGTGAGGGACTT--GCCTGGCACT-CTGGGCA-GGAGCCAGGGCTATTA-------------------------------------------------AA------A-----------------------------------------------------------------------CATGCTGCAGA--AT----TG-------GCTCAGGT----------------------------------------------------------------------------------------------------AAGTCAGTCTT----------------------AACT--GACATG--CCAGTAGCTCACA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 316945 101 + 667635 TGTTTGCTTGAACCAGTGAGGTGAGTAGCTTCAATGCGGTGTT-CATGAGTAGAAGCCA--------------------------------------------------------------------------------------------------------------------------------------------------GGA--CG----TG-------GCCCAG-CAG--------------------------------------------------------------------------------------------------TGGCCAGCCTC----------------------AAA-GAGACATG--TCA-----TC--- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 733010 137 + 1032594 GGTGCTCTTGAACCAGTGAGGTGAGTGACTTCACTCCAGGGTT-CATGAATGGGAGCCACAGCTGTTA-------------------------------------------------AG----AAA-----------------------------------------------------------------------TGCAGTGTGGA--CACACCTG-------GCCCTGATTA--------------------------------------------------------------------------------------------------AGGTCAGCCTC----------------------AGGTGGAACATG--CCAGGAGCTCACA i oryCun2.chrUn0106 C 0 I 2638 s bosTau4.chr17 30027196 134 - 76506943 CCTTTGGTTGAACCAACAAGGCAGGTGGCTCCCGTCAGGCATTCCCAGGTG-GGAGCT-GGGCTGCAG-------------------------------------------------AGCACAAAG-----------------------------------------------------------------------TGTGCTGCAGG--CC----TG-------GCCTGGCTG---------------------------------------------------------------------------------------------------TGGT-TGGCTC----------------------GATTGACATGTG--CCAGTAGCTCACT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64195811 133 - 94057673 TGTTTGGTTGAACCAGCGAGGCG-GTGGCTTCAGTCCAGCATC-TACAGAT-GGGGCCAGTGCTGCAA-------------------------------------------------AGTGCACTG-----------------------------------------------------------------------TGTGGAGCAGA--CC----TG-------GCCCAGATG---------------------------------------------------------------------------------------------------GTGTCAGGCTC----------------------AAT-GAGACGTG--CCAGAAGCTGACA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6417 119 - 7911 TGTTTGGCCGAACCAGTGAGACACGTGGCTTTCACGTGGCGTTCTCGGGTG-CAGGCCAGGGCTGCAA--------------------------------------------------GTGTGCTG-----------------------------------------------------------------------TGTGGCGCAGA--CC----CG-------GCCCAGATG---------------------------------------------------------------------------------------------------CAGTCTGGCCC----------------------AGC------------------CGAGAC i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3244530 113 + 42029645 TGTTTGGCTGAAGCCCTAAAGCAAGTGGCCTGAATATGGCATT-TATGTTG-GGAGCCAGGGCTGCAG--------------------------------------------------------TG-----------------------------------------------------------------------TGTGGTGCAGA--CA----TG-------G-CCAGAGG---------------------------------------------------------------------------------------------------CAGACTTGGCC----------------------GGT----------------AACTCATC i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 2018 105 + 3245 TGTTTGGTTGAACC----AGGCGAGTGGCTTCCATCTGGCATTTCCAGGTG-GGAGCCAGGGCTGCAA-----------------------------------------------------------------------------------------------------------------------------------AGGGAAGGG--CC----AG-------GCTCAGCTG---------------------------------------------------------------------------------------------------AGACCTG--CT----------------------GGT----------------GGCTCACA i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 144590 137 - 3408981 TGTTTGCTGGAACCAGTGAGGTGGGTGGTTTCATTCTCGTGTG-TATGGGTGAGACCCACTGTTGCTA-------------------------------------------------AGTGAGATG-----------------------------------------------------------------------CATAGGGTAGA--CC----TG-------GCCCAGATGC--------------------------------------------------------------------------------------------------CGGTCACACTC----------------------CATTGAGATCCA--CCAGTTGCTCACA i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=612113.000000 s hg19.chrUn_gl000223 160223 192 + 180455 TTCCACCCTGCTT-CCCGCCCGCTA---GCCCTGGTGTGAGCCTACCCAAC--ATC-TAGTTCGAGACTTTAAATAATCTGAGCTCCCAGCAAGAG-AACACCAAGATTTAGGTTCCCAAATTAATTAGATCATCTAAAATAAAATGTCCACTGCATCCACA-GGCAATAGCCCTCT-GGAACAAGACAATTCATGTGAGAT s panTro2.chr12 285186 192 - 135371336 TTCCACCCTGCTT-CCCACCCGCTA---GCCCTGGTGTGAGCCTACCCAAC--ATC-TAGTTTGAGACTTTAAATAATCTGAGCTCCCAGCAAGAG-AACACCAAGATTTAGGTTCCCAAATTAATTAGATCATCTAAAATAAAATGTCCACTGCATCCACA-GGCAATAGCCCTCT-GGAACAAGACAATCCGTGTGAGAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 328734 194 - 136387465 TTCCACCCTGCTT-CCCACCTGCTA---GTCCTGATGTGAACCTACCCAACATATC-TAGTTTGAGACTTTAAATAATCTGAGCTCCCAGCAAGAG-AACACCAAGATTTAGATTCCCAAATTAATTAGATCATCTAAAATAAAATGTCCACTGCATCCACA-GGCAATAGCACTCC-GGAACAAGACAATTCATGTGAGAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 287478 192 - 134511895 TTCCACCCTGCTT-CCCACCTGCTA---GCCCTGATGTGAACCTACCCAAC--ATC-TAGTTTGAGGCTTTAAATAATCTGAGCTCCCAGCAAGAG-AACACCAAGATTTAGGTTTCCAAATTAATTAGATCATCTAAAATAAAATGTCTACTGCATCCACA-GGCAGTAACCCTCT-GGAACAAGACAATTCATGTGAGAT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_504284 748 188 - 1071 TT-----CTATTT-CTTACTCACTT---ACACTGATTGGAGTCTACCAAAC--ATC-TAGTCTTAAGCTTTAAATGATCTGAGTTACCATCAAGAGAAAAATAAAGATTTTGGTTCCCAAATTAAGTACATTATCTAAAATAAAATTTCCATTGTGTCCACA-GGCCACAGCACTCA-GAAACAAGATAATGCATGTGTGAT i tarSyr1.scaffold_504284 C 0 C 0 s otoGar1.scaffold_120608.1-43992 5067 189 + 43992 ------CATGCCA-GCTGAGCACTA---GCCCTGATTTGAGTGTGCCAGAC--AGCTTAGTTTGAGGCTTTAAATGACCTAAGTTCCCAGCAAGAG-AAAACCAAGATTTAGGTTCCCCAATTAATTACGTCATCTAAAATAAAATTTCTACTGCATACACAGGGTGATAACTCTCAGGGAACAAGACAGTTCATGTGAGAT i otoGar1.scaffold_120608.1-43992 C 0 C 0 s tupBel1.scaffold_78714.1-13947 3961 168 - 13947 TTCCATCTTGGTT-CTTACCCACTA---GCCCTGATTCGAGTCTGTCAAAC--ATC-TAATCTGAAGCTTTAAATGATTTAAGTTCCCAGCAGGAG-AAAACCAAGATTTAATTTCCCAAATTAATTACATTATCT------------------------CA-GGCTATAGCTGTGA-GAAACAAGGCAATTCATGTGAGAA i tupBel1.scaffold_78714.1-13947 C 0 I 289 s cavPor3.scaffold_248 317046 186 + 667635 TTCCTTCCTGTTT-TTTACCTAATA---GGACTTATTTGCATCTATCACAT--ATC-TAGTGT------TTAAATGATCTGAATTACTAGAAAGAG-AAAAACAAGATTTAGGTTCCTCAATGAATGACATCATCTAAAATAACATGTCTGCTGTATCTGCA-GGCCCTTGCTCTCA-GGAACAAGACAGTTCATATGCAGC i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 735785 180 + 1032594 TTTCATCCTGTTT-CTCACCAACTACCCCGACTGAGCTAAATAAAAATTCA--GTC-TGAGAC------TGTAATGATCTGAGTTCCCAGCAAGGG-GAAAACCAAGTTTTAGGTCCCAAATTAATTACGTCATTTAAAAT----TTTCCACTGCATCTACA-GGCCGTAGCTCTCA-GGACCAAGGCAATTCAT-----GT i oryCun2.chrUn0106 I 2638 C 0 s bosTau4.chr17 30027330 154 - 76506943 CTCCATCTTGTTC-CTTAGCGCT---------------------AGCAAAT--AGC-CCGT-----------------CTGAGTTCCCAGTTATAG-AGAACCAAGATTGAGGTCCCCAAATGAATGACATCATCTCAAATAAGATTCCCATTGCAACTCTA-GGCCATGGGTCTCA-GGATCAAGA---CTTGTGTGAGAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64195944 171 - 94057673 TTGTATCCTGTTT-TATACCCACCA---GCCCTGATTTGAGTCTAGCAAAC--A-A-CGCG-----------------TCTAGTTCCCAG---AAG-AGAACCAAGATTTAAGTCCCCAAATTAATTATATCGTCTAAAATAAAATTCCCACTGCATGTTCA-GGCTGTGGCTCTCA-GGAACAAGATAACTCACGCCAGAT i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6536 150 - 7911 TTCCGCCCTGTTT-CTTACCCACTA---AATCCGATGGGCGTTGT------------------------------------------CAGGAAGAG-AGATCCGAGA--TAGGGTCCCGAATCAATGACATCATCTAAAATGAAATT-CCACTGCATCTCCA-GGGCATGGCTCTGA-GGAACAAGATAACTCATGTGAGAT i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3244643 157 + 42029645 TTGCATCCTGCTG-CTTACCCCT-----AGCCTGGTTCAAGTTGT---------------------------------TTGATTTCCCAGTGAGAG-AGAACCAAGA-TTAGATTCCCACAGTAATTACGTCATCTAAAAGAAAATTCCCACTGCGTCTCCA-GGCCGTGA--TTGA-GGGACATGATAACTCATGTGTGAA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 2123 160 + 3245 TTCCGTTCTGCTT------------------CTGATTTGAGTGCAGCAAAC--A-C-TTGT-----------------CTGAGATCCCAGTGAGAG-AGAACTGGGATTTAGGTTCCCAAATTAATTACACCATTTAAAATAAAATTCCCACTGCATCTCCA-GGCCATGGCCCTCA-GGAACAAGATGCCTCAGGTGAGGT i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 144727 188 - 3408981 TTCCATCCTATTTCCTTCCCCACCA---CCGCTTATTTCAGTCTA-CAGAC--ATT-TGATCTGAGGCTTTAGAT---ATGAGTTACCAACAAGAC-GAAGACAAGATGTAGGACCCCAAATTAGTTACATCATCCAAAAT-AAATTTCCACTGAGTCCACA-GGCCATGGCACTCA-GGAACAAGACAGTTTGCATGAGAT i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=365039.000000 s hg19.chrUn_gl000223 160415 123 + 180455 AAGAAA-GAAGAGCCCACAAGAC----CAAGGATGTATTCTCAGTTTACAGACCACT--GACCAGAGGC-CAC---TCCAGGGTGTCAGGACTAA-GAGAAGTCAC-AAAAC--AGCAGAT--TTCCCAAGAGCAGCGGA s panTro2.chr12 285378 123 - 135371336 AAGAAA-GAAGAGCCCACAAGAC----CAAGGATGTATTCTCAGTTTACAGACCACT--GACCAGAGGC-CAC---TCCAGGGTGTCAGGACTAA-GAGAAGTCAC-AAAAC--AGCAGAT--TTCCCAAGAGCAGCGGA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 328928 123 - 136387465 AAGAGA-GAAGAGCCCACAAGAC----CAAGGATGCATTCTCAGTTTACAGACCACT--GACCAGAGGC-CAC---TCCAGGGTATAAGGACTAA-GAGAAGTCAC-AAAAC--AGCAGAT--TTCCCAACAGCAGCGGA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 287670 120 - 134511895 AAGAAA-GAAGAGCCCACAAGAC----CAAGAATACATTCTCAGTTTACAGACCACT--GACCAGAGAC-CAC---TCCA-GGTGTCAGGACTAA-GAGAAGTCAC-AAAAC--AGCGGGT--TTCCCAAGAGCAGTG-- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_504284 936 113 - 1071 AAGAAA-GAGG---CCACAAGACTGAGTGAGGATGCATTATCTGTTTACAAACCTTT--GACCAGAAGC-TTC---TCTCCAGAGTCAGGATAGA-GGGAAGT--------------AGAT--GTCCTAAGAGCAGCGAA i tarSyr1.scaffold_504284 C 0 N 0 s otoGar1.scaffold_120608.1-43992 5256 130 + 43992 AAGAGAGGAAGAGGCCGCGAGAG----TGAGGATGCAGTGTCAGTTTACAGACCCTCTAAACCAGAGCC-CTCTCTTCCAGAGTGTCAGGGCAGA-GAGAAATAACGAAAAC--AAAAGAT--TTCCCAAGAGCATCAGA i otoGar1.scaffold_120608.1-43992 C 0 C 0 s tupBel1.scaffold_78714.1-13947 4418 123 - 13947 AAGAAA-GAAGAGGCCTTAGGAC----TAAGGATGCATTCTTGGTTTATGGACCTGT--GACCAGAGGA-TGC-CCTCCAGTGTGTCCGGAC----AAGAAGTTAC-AAAAC--AG-AGTTGATTCTCAAGAGTAGCTGA i tupBel1.scaffold_78714.1-13947 I 289 C 0 s cavPor3.scaffold_248 317232 120 + 667635 AAGTGA-AAAAAGGCTTCAAGAA----TGAGAATGGATTCTTACTTTCCAAACCTTT--CACCAGAGGA-CTC-TCTCCA----GTCAGGACAGA-CAGAAATTCC-AAACC--AGCAGCT--TTCCCAAGATCAGTAG- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 735965 113 + 1032594 AAGATA-AGAGAGGCCTCAAGGC----TGAGGAT-CATTCTCAGCTTACAGACCTCT--GATCAGAGAC-CTC-TCTCCAGAGTGTCGGCACAGAGCAG---------------AGCAGAT--CTTCCAAGAGCAGCAGA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30027484 110 - 76506943 AAGAAA-GAAGAGGCCTCAGGAC----TTGGGGTGCATTCCTATCT---------TT--GACCAGAGG--------TTCAGAGTATCAGGACAGA-GAGAAGTCAC-AGAGA-GAACAGAT--TTTCGG-GAACTGGGGA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64196115 126 - 94057673 AAGGAA-GAAGAGG-CTCAGGCC----TGGGGGTACATTGTCAGTTTACAGACCTTC--AGCCAGAGGC-CTT-TCTCCGGAGCGTCAGGACACA-GCGAAGTCAC-AGAACAGAGCAGAT--TTCCCAGGAGCAGCAGA i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6686 107 - 7911 AAAAAA-GAAGAGGCCTCAGGAC----TAGGGGTGCATTCTCAGTGTACAGACATTT--GACCAGAGGC-CTC-TCTCCAGAGCATCAGAACA--------------------GAGCAGAT--TTTCCA--AGCAGCTGA i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3244800 122 + 42029645 AAGGAA-GAAGAGGCCTCAGGAC----TAGGGGTGCCTTGTCAGTTTACAGACATTT--GACCAGAGGC---C-TCTGCAGAGCGTCAGGACGGA-GAGAAGTCAC-AGAAC-GAGCAGAT--TTTCCA--AGCAGCAGA i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 2283 76 + 3245 AAGGAA-GGAGAGG---------------------------CAGTT------------------------------TCCAGAGCGTCAGGACAGA-GAGAAGGCCC-AGACC--AGCAGAA--TTCCCCAAAGCAGCAGA i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 144915 124 - 3408981 AAGAGA-GAAGAGGCCTCAGGAC----CAGGAATGCATTCTCAGCGTACAGACCTTT--GAACAGAGGCTCTC---CACGGAACGACAGGACG---GAGAAGTCAC-AGCACACAGCAAGG--ACCCCAGGAGCAGCAGA i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I a score=125149.000000 s hg19.chrUn_gl000223 160538 40 + 180455 AAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTG s panTro2.chr12 285501 40 - 135371336 AAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 329051 40 - 136387465 AAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTTTG i ponAbe2.chr12 C 0 C 0 s otoGar1.scaffold_120608.1-43992 5386 39 + 43992 AAATGAGCGAATCAGAGGAGAGTAATTTGTTTATCCTCT- i otoGar1.scaffold_120608.1-43992 C 0 N 0 s tupBel1.scaffold_78714.1-13947 4541 38 - 13947 AAATGATCAGGTCACAGGTGGGTTATTTACTTAGCCTC-- i tupBel1.scaffold_78714.1-13947 C 0 I 14 s cavPor3.scaffold_248 317352 35 + 667635 AAATGATTGAGTCACAGGTGGGTT----GTTTATTCTCT- i cavPor3.scaffold_248 C 0 I 35 s oryCun2.chrUn0106 736078 23 + 1032594 AAATGACGGAGACACAGGTGAGT----------------- i oryCun2.chrUn0106 C 0 I 2553 s bosTau4.chr17 30027594 34 - 76506943 AGATGATGAAGTCACAGGTAAGTTGTTTGTCCTC------ i bosTau4.chr17 C 0 I 15413 s equCab2.chr8 64196241 38 - 94057673 ACATGATCGAGTCACAGGTGAGTTACTTGCTTATCCTC-- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6793 40 - 7911 AAATGATCAAGTCACAGGTGAGTTACTTGTTTATCATCTG i felCat3.scaffold_2337 C 0 I 23 s canFam2.chr26 3244922 32 + 42029645 AAATGATCAAGTCACAGGTGAGTTATTTGTTC-------- i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 2359 40 + 3245 AAATGATCATGCCACAGGTGAGTTATGTGTTTATTCTCCA i myoLuc1.scaffold_85199 C 0 I 146 s loxAfr3.scaffold_113 145039 40 - 3408981 AAATGATCAAGTCACAGGTGAGTTATTGGCTGACCCTTGG i loxAfr3.scaffold_113 C 0 I 2 e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 287790 0 - 134511895 C a score=-195.000000 s hg19.chrUn_gl000223 160578 47 + 180455 TTTCATGAAAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCT s panTro2.chr12 285541 47 - 135371336 TTTCATGAAAATGATCCAGTCACAGGTGGGTTATTGGTTTATCCTCT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 329091 42 - 136387465 TTTCATG-AAATGATCCAGTCACAG--GGGTTATCGGTTTATC--CT i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64196279 15 - 94057673 ----------------------CAG---------CAGTTT-TCCTCT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3244954 5 + 42029645 --------------TCCAA---------------------------- i canFam2.chr26 C 0 I 13 e myoLuc1.scaffold_85199 2399 146 + 3245 I e felCat3.scaffold_2337 6833 23 - 7911 I e tupBel1.scaffold_78714.1-13947 4579 14 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145079 2 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 287790 0 - 134511895 C e cavPor3.scaffold_248 317387 35 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=14613.000000 s hg19.chrUn_gl000223 160625 53 + 180455 GTTTCATGAAAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTGTTTC s panTro2.chr12 285588 53 - 135371336 GTTTCATGAAAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTGTTTC i panTro2.chr12 C 0 T 96 s ponAbe2.chr12 329133 53 - 136387465 GTTTCATGAAAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTGTTTG i ponAbe2.chr12 C 0 C 0 e myoLuc1.scaffold_85199 2399 146 + 3245 I e felCat3.scaffold_2337 6833 23 - 7911 I e tupBel1.scaffold_78714.1-13947 4579 14 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145079 2 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 287790 0 - 134511895 C e cavPor3.scaffold_248 317387 35 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64196294 0 - 94057673 C e canFam2.chr26 3244959 13 + 42029645 I a score=11118.000000 s hg19.chrUn_gl000223 160678 50 + 180455 ATGAAAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTGTTTCAT---- s panTro2.chr12 285545 50 - 135371336 ATGAAAATGATCCAGTCACAGGTGGGTTATTGGTTTATCCTCTGTTTCAT---- i panTro2.chr12 T 96 C 0 s ponAbe2.chr12 329186 50 - 136387465 ATGAAAATGATCCAGTCACAGGTGGGTTATCGGTTTATCCTCTGTTTCAT---- i ponAbe2.chr12 C 0 C 0 s myoLuc1.scaffold_85199 2545 25 + 3245 -----------------------------TCAGTGTATTGCTTGCTGCTTCCAA i myoLuc1.scaffold_85199 I 146 C 0 e felCat3.scaffold_2337 6833 23 - 7911 I e tupBel1.scaffold_78714.1-13947 4579 14 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145079 2 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 287790 0 - 134511895 C e cavPor3.scaffold_248 317387 35 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64196294 0 - 94057673 C e canFam2.chr26 3244959 13 + 42029645 I a score=18001.000000 s hg19.chrUn_gl000223 160728 46 + 180455 GAAAATGATCCAGTCACAGGT----------GGGTTATCGGTTTATCCTCTGTTTC s myoLuc1.scaffold_85199 2570 44 + 3245 AGAAATAACCCAG----AGGTCTGGCTGTGAAAGACATGAGTT--------TATTA i myoLuc1.scaffold_85199 C 0 I 2 s rheMac2.chr11 287790 46 - 134511895 GAAAATGATCCAGTCACAGGT----------GGGTTATCGGTTTGTCCTCTGTTTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 329236 45 - 136387465 G-AAATCATCCAGTCACAGGT----------GGGTTATCAGTTTATCCTCTGTTTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 285595 45 - 135371336 GAAAATGATCCAGTCACAGGT----------GGGTTATCGGTTTATCCTCTGTTT- i panTro2.chr12 C 0 I 1 e felCat3.scaffold_2337 6833 23 - 7911 I e tupBel1.scaffold_78714.1-13947 4579 14 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145079 2 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 317387 35 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64196294 0 - 94057673 C e canFam2.chr26 3244959 13 + 42029645 I a score=4952.000000 s hg19.chrUn_gl000223 160774 48 + 180455 GTGGGTG-------TTATGAGGC-TTACAGAAATCTCTGCAACACAC--AGAAGGGTC s panTro2.chr12 285641 48 - 135371336 GTGGGTG-------TTACGAGGC-TTACAGAAATCTCTGCAACACAC--AGAAGGGTC i panTro2.chr12 I 1 C 0 s ponAbe2.chr12 329281 48 - 136387465 GTGGATG-------TTATGAGCC-TTACAGAAATCTCTGCAACACAC--AGAAGGGTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 287836 48 - 134511895 GTGGATG-------TGATGAGGC-TTATGGAAATCTCTGCAACACAT--AGAAGGGTC i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_78714.1-13947 4593 37 - 13947 GTGAATG-------TGATGAGGCTTTACAAGAATCTGTATAATA-------------- i tupBel1.scaffold_78714.1-13947 I 14 I 193 s cavPor3.scaffold_248 317422 48 + 667635 GTGG-TA-------TAATGAGGC-TTACTAGAATCTCTACAACAAACA-AGAAAGGTC i cavPor3.scaffold_248 I 35 C 0 s canFam2.chr26 3244972 30 + 42029645 ATAGATG-------TGACAAAGC-TC-------------------A-TGGGAAAGTAC i canFam2.chr26 I 13 C 0 s felCat3.scaffold_2337 6856 19 - 7911 ------------------GAGGT-TT-------------------G-CAGGAAAGCTC i felCat3.scaffold_2337 I 23 C 0 s equCab2.chr8 64196294 48 - 94057673 GTGCATG-------TGACGAGGC-GTA-AGGAGCCTCTACAACCAA-CAGGAAAGATC i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_85199 2616 35 + 3245 ATTTATGAGCGCACCGGTGAAGT-CT----------CTGCAACACA------------ i myoLuc1.scaffold_85199 I 2 I 291 s loxAfr3.scaffold_113 145081 35 - 3408981 GTggatg-------tgaggaggc-ttagcagaatcactataac--------------- i loxAfr3.scaffold_113 I 2 C 0 e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=149158.000000 s hg19.chrUn_gl000223 160822 109 + 180455 Taaatacatttaa------ataa-gagaaaatataaacttgggaaagaaga-tgtccaaagaagcacaaagtagattatagaaacatacaaaagtctcagctgggcatggtggctca s panTro2.chr12 285689 109 - 135371336 TAAATACATTTAa------ataa-gagaaaatataaacttgggaaagaaga-tgtccaaagaagcacaaagtagattatagaaacatacaaaagtctcagctgggcatggtggctca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 329329 109 - 136387465 TAAATACATTTAA------ATAA-GAGAAAATATAAACTTGGGAAAGAAGA-TGTCCAAAGAAGCACAAAGTAGATTATAGAATCATACAAAAGTCTCagctgggcatggtggctca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 287884 109 - 134511895 TAAATACATTTAA------ATAA-GAGAAAATATAAGCTTGGGAAAGAAGA-TGTCAAAAGAAGCACATAGTAGATTATAGAATCATACAAAAGTCTCagctgggcatggtggctca i rheMac2.chr11 C 0 C 0 s tupBel1.scaffold_78714.1-13947 4823 79 - 13947 TAAATGAATTTAAGTT---ATGA-CAGAAGACATAAACTTGG--AAGAAGA-TGTCAAAAGAAGCACAAGGTAGGTTGTAGAACCA------------------------------- i tupBel1.scaffold_78714.1-13947 I 193 I 1 s cavPor3.scaffold_248 317470 84 + 667635 TAAATACATTTAAATCATAATAA-GAGAAAATATAACTTCTGG---GAAGA-TGTTAAAGGGAACACAAAGTACTTTATTCAA---TACAAA------------------------- i cavPor3.scaffold_248 C 0 I 20 s canFam2.chr26 3245002 70 + 42029645 TAAATACATTTAAATC---GTAATCAGAAAATATCAACTT-GGAAAGAAGG-TGTCAG----AGAGCAAAGTGGATTAT-------------------------------------- i canFam2.chr26 C 0 I 6 s felCat3.scaffold_2337 6875 94 - 7911 TAAGTACATTTGAGTC---ATAATCAGAAAATACAAACTTGGGAAAGAAGA-TGTCAG-AGAAGAACGAAGTGGATTGTGGAATCATACAAAAGTCTTA------------------ i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64196342 96 - 94057673 Taaacacatttacaac---ataatcagaaaatacaaacttgggaaagaaga-tgccaaaagaagcacagagtggactgcagaatcatgcaagagccttaa----------------- i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 145116 86 - 3408981 -aaacatatttag------agaa-aaaaaaaaatcg--------tagaagattgtcaggaaaagcacaaagtgga--ataggaccacactaaagtcttaaatgt------------- i loxAfr3.scaffold_113 C 0 C 0 e myoLuc1.scaffold_85199 2651 291 + 3245 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=62872.000000 s hg19.chrUn_gl000223 160931 135 + 180455 tgcctgtaatcccagccctttgggaggccgaggagggcagatcatttgaggtcaggagtttgagaccagcctggccaacatggcaaaaccccgtctctactgaaaatacaaaaattagcctcccagctactcggg s panTro2.chr12 285798 135 - 135371336 tgcctgtaatcccagccctttgggaggccaaggagggcagatcatttgaggtcaggagtttgagaccagcctggccaacatggcaaaaccccgtctctactgaaaatacaaaaattagcctcccagctactcggg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 329438 135 - 136387465 cgcctgtaatcccaaccctttgggaggccgaggaggacagatcacttgaggccaggagtttgaaaccagcctggccaatatggcaaaaccctatctctactgaaaatacaaaaattagcctcccagctgcttggg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 287993 135 - 134511895 cgcctgtaatcccagccctttgggaggccaaggagggcagatcatttgaggccaggagtttgagaccagcctggccaatatggcaaaaccccttctctactaaaaatacaaaaattagcctcgtagctactcggg i rheMac2.chr11 C 0 C 0 s loxAfr3.scaffold_113 145202 59 - 3408981 -------------------------------ggaacacagat---------------gtttaagat-----------acaagg------tccttcactgtt---------agagttaagctgcaagctttt---- i loxAfr3.scaffold_113 C 0 C 0 e myoLuc1.scaffold_85199 2651 291 + 3245 I e felCat3.scaffold_2337 6969 0 - 7911 C e tupBel1.scaffold_78714.1-13947 4902 1 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 317554 20 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64196438 0 - 94057673 C e canFam2.chr26 3245072 6 + 42029645 I a score=5793.000000 s hg19.chrUn_gl000223 161066 64 + 180455 aggctgaggcatgagaatcacttgaacccaggagatggaggtt-------------------gcagtgagctgagatcgcatc s rheMac2.chr11 288128 64 - 134511895 aagctgaggcatgagaatcacttgaacccaggagatggagatt-------------------gcagtgagctgggattacatc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 329573 83 - 136387465 aggctgaggcatgagaatcacttgaacccaggggatggaggttgcagtgagctgagatcgcAgcagtgagctgagatcgcatc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 285933 64 - 135371336 aggctgaggcatgagaatcacttgaacccaggagatggaggct-------------------gcagtgagctgagatcgcatc i panTro2.chr12 C 0 C 0 s felCat3.scaffold_2337 6969 17 - 7911 AAGTTGAAGCATG--------------------GATG---------------------------------------------- i felCat3.scaffold_2337 C 0 I 7 s pteVam1.scaffold_5065 28881 16 + 110923 acgctggcacgtg--------------------aat----------------------------------------------- i pteVam1.scaffold_5065 N 0 C 0 s loxAfr3.scaffold_113 145261 7 - 3408981 ----------------------------------------------------------------------cttagat------ i loxAfr3.scaffold_113 C 0 C 0 e myoLuc1.scaffold_85199 2651 291 + 3245 I e tupBel1.scaffold_78714.1-13947 4902 1 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 317554 20 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64196438 0 - 94057673 C e canFam2.chr26 3245072 6 + 42029645 I a score=5843.000000 s hg19.chrUn_gl000223 161130 40 + 180455 agtgcactccagccag-ggtgacagagtgagaaaaagaatc s rheMac2.chr11 288192 36 - 134511895 agtgcact----ccgg-ggtgacagagttagaAAAAGAGTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 329656 38 - 136387465 agtgcgcttcagccag-ggtgac--agtgagaaaAAGAATC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 285997 40 - 135371336 agtgcactccagccag-ggtgacaaagtgagaaaaagaatc i panTro2.chr12 C 0 C 0 s equCab2.chr8 64196438 17 - 94057673 agtggagcccagacag-g----------------------- i equCab2.chr8 C 0 C 0 s pteVam1.scaffold_5065 28897 17 + 110923 -gtgta----agacac-------------------aaggtc i pteVam1.scaffold_5065 C 0 N 0 s loxAfr3.scaffold_113 145268 36 - 3408981 -----attctaagcagcagtgacacaaagggaaacaggagt i loxAfr3.scaffold_113 C 0 C 0 e myoLuc1.scaffold_85199 2651 291 + 3245 I e felCat3.scaffold_2337 6986 7 - 7911 I e tupBel1.scaffold_78714.1-13947 4902 1 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 317554 20 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245072 6 + 42029645 I a score=-5877.000000 s hg19.chrUn_gl000223 161170 47 + 180455 atacaaaagtcttaaagttggaa-------gagatcaataagaaatgggatcct s rheMac2.chr11 288228 47 - 134511895 ATACAAAAGTCTTAAAGTTGGAA-------GAGATCAATAAGAAATGGGATCCT i rheMac2.chr11 C 0 I 2964 s ponAbe2.chr12 329694 47 - 136387465 ATACAAAAGTCTTAAAGTTGGAA-------GAGATCAATAAGAAATGGGACCCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 286037 47 - 135371336 atacaaaagtcttaaagttggaa-------gagatcaataagaaatgggatcct i panTro2.chr12 C 0 C 0 s equCab2.chr8 64196455 16 - 94057673 -taaggaa-------------------------------------tgaggccct i equCab2.chr8 C 0 C 0 s canFam2.chr26 3245078 49 + 42029645 ATACAGAAATCTTAAAGTCA-----AAGCATGGATACTTAGGAGACAAGGTACT i canFam2.chr26 I 6 C 0 s myoLuc1.scaffold_85199 2942 48 + 3245 AAACCAAAGTCTTCCAGTTG-----GAACACAGATGTACAAGAAATG-GGTCCT i myoLuc1.scaffold_85199 I 291 C 0 s cavPor3.scaffold_248 317574 6 + 667635 ------------------------------------------------ggtgct i cavPor3.scaffold_248 I 20 C 0 s tupBel1.scaffold_78714.1-13947 4903 34 - 13947 --------------------GAAAGTTTTCAAGATTAATAACAAATAGGATGAT i tupBel1.scaffold_78714.1-13947 I 1 C 0 s loxAfr3.scaffold_113 145304 1 - 3408981 --------------------------------------------a--------- i loxAfr3.scaffold_113 C 0 C 0 e felCat3.scaffold_2337 6986 7 - 7911 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=143539.000000 s hg19.chrUn_gl000223 161217 168 + 180455 tccctg--ttacagagttgaactgcaagcttt--tctgttatttccagaagccataacagaaagggaagta--ggaatagttaacgtgggttcctcttgtcaaaagg-aaaaagcagacaaattactctggagaagcaaatacttcc-gataattacacataaagaaaatgttttg s panTro2.chr12 286084 168 - 135371336 tccctg--ttacagagttgaactgcaagcttt--tctgttatttccggaagccataacagaaagggaagta--ggaatagttaacgtgggttcctcttgtcaaaagg-aaaaagcagacagattactctggagaagcaaatacttcc-gataattacacataaagaaaatgttttg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 329741 168 - 136387465 TCCCTG--TTACAGAGttgaactgcaagcttt--tctgttatttccagaagacataacagaaagggaagca--ggaatagttaacatgggttcctcttgtcaaaagg-aaaaagcagacaaattactctggagaagcaaatacttct-gataattacacataaagaaaatgttttg i ponAbe2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 4937 162 - 13947 ----TGATTTTTAGTGttgatcagcaagcttt-ctcagatatttccagaagccgtaacaaaaagggaaaca--ggaatagtt------gtttccctctgtcagaagg-agaaagcagaccaattactcaggagaagcaaacgtttcctgataattacacctaaagaaaaCACTTTG i tupBel1.scaffold_78714.1-13947 C 0 I 3308 s cavPor3.scaffold_248 317580 170 + 667635 atattg--tcacacagttgaattgcaagcttttctcaggtatttccagaagttgcagcagaatgagaaata--gaaatagtg-acatagtttact-ttgtcaaaaggaaaaaagcagaccaaccattcagggtaagtgaacataccctgataaatacatgtaaaagaaatGGTTTG i cavPor3.scaffold_248 C 0 C 0 s equCab2.chr8 64196471 159 - 94057673 tcacta--ct--cgggtggagctgcaggcc-tccccagctgttccag-aagccttgtcaaaaagggaaaca--ggaatagtc-acatgggtccct-ctgtc-------aaaaagcagaccagttactcagccgaagcaaacatttcctaacagttgcacataaagaaaacattttg i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 6993 148 - 7911 --------------AGGTGAGCTGCCCGCTGTCctcggatgttcccagaagtggagacaggaagggaagcg--ggaatagtt-atgtggtctcct-ctgac-------gaaaagcagactagttactcagtagaagcaa-accttgctgatgatgcagagcccaaa--atatttgg i felCat3.scaffold_2337 I 7 C 0 s canFam2.chr26 3245127 156 + 42029645 TCATTG--CT--AGAGGTGAGCTGCAGGCCGTCCTCAAATATTCCCA-CAGTGGAGACAGGAAGGGAAGCAGTGGAGTGCTT------GTTTCCT-CTGAC--------AAAAGCAGACTAGCTACTCAGTGCAAGCAACCCCTTCCTAATGGTTACTTACACAGACGGTACTTTG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 2990 145 + 3245 TCACGG--TT--AGAGATGAGCTGCAGGCTTTCTTCAGCGCTTCCCA-GAAGCCGGGCAGACAAGGCAGCA--GGAACAGCT-----------------AC-------AAAAGGCAAAGCCTTTACGGGGTAGGAGCAAGCGTTTGCTGAGGATTCCACGTGGAGGAAACTCGTCG i myoLuc1.scaffold_85199 C 0 C 0 s loxAfr3.scaffold_113 145305 79 - 3408981 -----------------------------------------------------------------gctaca--cggtttctt--------------ctgtcaaaaag-aaaaaggggagcatttactcaggagaaatga-tatttcc------ttacacat--------tgttttg i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=61385.000000 s hg19.chrUn_gl000223 161385 137 + 180455 ataattattcatatacatggcatagt--ggta-agatcctaaatagcagcc----------------ttgtaataaaca----aaca-----ggtttcctaggactatt---tctt--ggagctcctcaatgtcagctaagggcatgaatc---gaaagaattcagaacacag s panTro2.chr12 286252 137 - 135371336 ataattattcatgtacctggcatagt--ggta-agatcctaaatagcagcc----------------ttgtaataaaca----aaca-----ggtttcctaggactatt---tctt--ggagctcctcaatgtcagctaagggcatgaatc---gaaagaattcagaacacag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 329909 137 - 136387465 ataattattcatatacatggcatagt--ggta-agatcctaaatagcagcc----------------ttgtaataaaca----aata-----ggtttcctaggactatt---tctt--ggagctcctcaatgtcagctaagggcatgaatc---taaagaattcagaacgcag i ponAbe2.chr12 C 0 C 0 s cavPor3.scaffold_248 317750 115 + 667635 ----------ATTTAGGTCATGCAGA--GATACAAGTACTAAAAGACAGCC-----------------CGTAATGAATG----AACATACTGTATTTCCTGGGACTATT---TCTTACACAGTTACTTTGTATAAGCTATGGGCCAGAGTC---------------------- i cavPor3.scaffold_248 C 0 I 10726 s equCab2.chr8 64196630 144 - 94057673 acagctatgtatgtagatgatatagt-gggca-aagtcctaaatagcagccttgtaatatgtaaatcctgcgacaaatg----agca-----tatttcctagggctgtt-tctcac--caagttcctcagtgt--------------aagctcagggGGAACTCCGAACACA- i equCab2.chr8 C 0 C 0 s felCat3.scaffold_2337 7141 141 - 7911 acagctattgatggggatgagagagtgggaca-cagtcctaaatagcagcc---------------cctataataaaca-------------tattacgcagtgctaagaaattac--agagttcctcagtgtgagctaagggcac-aaattgaagcaaagctcagaacagag i felCat3.scaffold_2337 C 0 C 0 s canFam2.chr26 3245283 126 + 42029645 ATAACTGTTTATGTGGGTGATAGAGT-GGACA-AAGTCCTA---AGTAAAC---------------CCTGTAATAAATA----AACT-----TATTTCCCAGTGCTGTT---TAAC--AGTGTTCCTCAATGTG-------------AATCTAAAGTAAAACTCAGAACACAG i canFam2.chr26 C 0 C 0 s myoLuc1.scaffold_85199 3135 102 + 3245 ATAGCCGCTCATGTCGCTGACA---T-GAACG-CATTTATTAGGAGGGATT---------------CTTAGGA-----G----GCCC-----TAGTTGCGAGCGAAGGG---------------------TGTG-------------AATC---GGGAGGGTGCAGAACACAG i myoLuc1.scaffold_85199 C 0 N 0 s loxAfr3.scaffold_113 145384 145 - 3408981 atagctgtttatatag--gctatagc-agaca-aagtcctaaatagcaacc----------------ctataaaaaatgcaatagaa-----tatttcctaggactttt---tcttaaagaggccctcagaataagctaaggggataattctgaaggacaactcattacacag i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=126398.000000 s hg19.chrUn_gl000223 161522 161 + 180455 tttcttcgag--gactgagatg--gggtcttggttgcacatcctacctagattccagttttagga------aagaaacttaaatcacctggcagaattgatcattacgaaaccttcaaatggtccc---cataagtatgctctccactggaatgttgatgtgttttggatggaa s panTro2.chr12 286389 161 - 135371336 tttcttcgag--gactgagatg--gggtcttggttgcacatcctacctagattccagttttagga------aagaaacttaaatcacctggcagaattgatcattacgaaaccttcaaatggtccc---cataagtatgctctcccctggaatgttgatgtgttttggatggaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330046 161 - 136387465 tttcttcgag--gactgagatg--gggtcttggttgcacatcctacctagattccagttttagga------aagaaacttaaatcacctggcagaattgatcattatgaaaccttcaaatggtccc---cataagtatgctctccactggaatgttgatgtgttttggatggaa i ponAbe2.chr12 C 0 C 0 s canFam2.chr26 3245409 161 + 42029645 -TTGTTACAG--GACCAAACCTGTGGGCCTGGACCACCTATCTTACTTATATTCTAGCTGTAGGA------AACAAACCAAAGTCATCTGGCAGAACTGATCATTACAAAACCTTCAAATGGCCCCATAAATA----TTCTGTCAGTTGGAATTTTGGTACATTTTAGGAAGAA i canFam2.chr26 C 0 C 0 s felCat3.scaffold_2337 7282 158 - 7911 tttgtttcag--gactgaaacagtgggccccga-tacctatcttacctgtgttccagttttagga------aagaaacctaaatcatccggcagaattgaccactacaaaactttcagatggtccc---cata----ttctctcagttgggattttggtacattttgggtagaa i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64196774 107 - 94057673 -CAGTTAGGGGAGATGGGAACAGTGGGCCT---------------------------------------------------------------GGACTGATTATTACAAAACCGTCAAATGGCCCC---CATAAGCCTCCTCTCAGTTGGAATTTTGGTACATTTTAGGTGGAA i equCab2.chr8 C 0 C 0 s loxAfr3.scaffold_113 145529 165 - 3408981 --tttgtcag--ga-tgcaacagcatgccttgggtatacagtcgagctatattctagtttcaggaacctcgaagagaactaagttatctggtataattgattactgccaagtcttcagg-ggtacc---cataaagattgtatcagttggaattttggtacattttttgtagaa i loxAfr3.scaffold_113 C 0 I 460 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=41872.000000 s hg19.chrUn_gl000223 161683 60 + 180455 atg---ccgctcctgttggcagaggcttgacatgcagggatct---gcgttCAGCTCTGTTTCCAT s panTro2.chr12 286550 60 - 135371336 atg---ccgcttctgttggcaaaggcctgacatgcagggatct---gcgttCAGCTCTGTTTCCGT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330207 60 - 136387465 atg---ctgctcctgttagcaaaggcttggcatgcagggatct---gcgttCAGCTCTGTTTCCAT i ponAbe2.chr12 C 0 C 0 s canFam2.chr26 3245570 66 + 42029645 ATGTTTCTGCTTCTATTGGCAAAAGCTGGGCATGGTGGTATTCTAGACCTTTAGCCCTTTCTGCTT i canFam2.chr26 C 0 I 201 s felCat3.scaffold_2337 7440 59 - 7911 atatctttgcttctgttggcaaaagctgggcgtgGGTGTATCT---GCCTTTAGCTCTTTTT---- i felCat3.scaffold_2337 C 0 C 0 s equCab2.chr8 64196881 63 - 94057673 ATGTATTTGCTTCTGTTGGCAAAAGCGGGACATGAGGGTATCT---GCCTTTTGTTCCTATTCCTT i equCab2.chr8 C 0 I 23 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=36961.000000 s hg19.chrUn_gl000223 161743 35 + 180455 ACTTTGTTGACTCAAGAAACAGACTGTGGTGTCCC s panTro2.chr12 286610 35 - 135371336 ACTTTGTTGACTCAAGAAACAGACTGTGGTGTCCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330267 35 - 136387465 ACTTTGTTGACTCAAGAAACAGACTGTGGTGTCCC i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64196967 35 - 94057673 ACTGTCTCAATTCCAGAAACGGACTGCAGTGTCCC i equCab2.chr8 I 23 C 0 s felCat3.scaffold_2337 7499 28 - 7911 ACTTTCTTGACTCAAGAAATGGAGagtg------- i felCat3.scaffold_2337 C 0 N 0 s canFam2.chr26 3245837 32 + 42029645 GCTTTTTTGACTCGAGAAATGGAGA---GTGTCCC i canFam2.chr26 I 201 I 5323 s myoLuc1.scaffold_167266 15 35 + 78941 AATTTCTTGACTCAAGAAACAGACTGTCATGTCCC i myoLuc1.scaffold_167266 N 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=43012.000000 s hg19.chrUn_gl000223 161778 88 + 180455 CTCACCTTTCGGAGGAATTCTTA-CCACCTAGTCAGCCTCTCCCC---TCTCACCCTTTCCCTGCCTTTCCTTTCTTCCTGATATTTTCTTT s panTro2.chr12 286645 88 - 135371336 CTCACCTTTCGGAGGAATTCTTA-CCACCTAGCCAGCCTCTCCCC---TCTCACCCTTTCCCTGCCTTTCCTTTCTTCCTGATATTTTCTTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330302 88 - 136387465 CTCACCTTTCGGAGGAATTCTTA-CCACCTAGCCAGCCTCTCCCC---TCTCACCCTTTCCCTACCTTTCCTTTCTTCCTGATATTTTCTTT i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64197002 91 - 94057673 TTCACCTTTCAGAGCAATTCTTGTCCACCTAGCTAACCTCCCCTCGCTCTTCTCTCCCTCCGT-CCTTTCCTTTCTTTTAAAAATTCTATTG i equCab2.chr8 C 0 C 0 s myoLuc1.scaffold_167266 50 84 + 78941 TTAGCTTTTCAAAGCCACTCCTACCCACTGAGCTAACTTCCC------TCTTTCTCTTTCCCT-CCCTTCA-TTCCTTTAAAAATTCTGTTT i myoLuc1.scaffold_167266 C 0 N 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=16368.000000 s hg19.chrUn_gl000223 161866 57 + 180455 TTTTGATGTTCAGTCCTACGCCAGGAGTGgcaccactgcactccagcctgggtgacg s panTro2.chr12 286733 57 - 135371336 TTTTGATGTTCAGTCCCACGCCAGGAGTGgcaccactgcactccagcctgggtgacg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330390 57 - 136387465 TTTTGATGTTCAGTCCTACGCCAGGAGTGgcaccactgcactccagcctgggtgacg i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64197093 43 - 94057673 -TTTGA---ACTGACATA---------TGGCAACACTG-ACTTCCCCTTTTCTGACG i equCab2.chr8 C 0 I 45 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=28081.000000 s hg19.chrUn_gl000223 161923 104 + 180455 gagcaagacgccgtctcaaaaaaaaaaaagtaaaggaataaaggatagctactccataggcagagcagggcattccggaaagcaggaggaggaaggcgcccacc s ponAbe2.chr12 330447 104 - 136387465 gagcaagacgccgcctcaaaaaaaaaaaaataaaggaataaaggatggctactccataggcagagcagggcattccagaaagcaggaggaggaaggcgtgcacc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 286790 104 - 135371336 gagcaagacgccgtctcaaaaaaaaaaaagtaaaggaataaaggatggctactccataggcagagcagggcattccggaaagcaggaggaggaaggcgcccacc i panTro2.chr12 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64197136 45 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=14537.000000 s hg19.chrUn_gl000223 162027 53 + 180455 ctaggtacaaggcttgttgacatgtaggacaacaac---aatgacagtcacaggga s panTro2.chr12 286894 53 - 135371336 ctaggtacaaggcttgttgacatgtaggacaacaac---aatgacagtcacaggga i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330551 49 - 136387465 ctaggtacaagga-tggtgacatgtaggacaacaac------gacagtcacaggga i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64197181 53 - 94057673 ccaggtgtcagagcagctgat---taaagcaacagccagaatgaaagtcacagtgg i equCab2.chr8 I 45 I 78 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=73711.000000 s hg19.chrUn_gl000223 162080 301 + 180455 gatgtgctcagccacaagggtttgtgataaaggattgattttc----ttaatatattttataagaatcaatattattatctttaaagcaaaattagaaacggttttgttctcaagacatggggacatcaggacgttcctgggcatgggcctgtttagtaaacattattaatctgttcccttaaccgtaaacatctagaggccaggaatacctcacctcccggcaatgctgtccagcaagctccagcctcattttccctcgccctcactcaagatggagtcgctttggttctaatgcttctgacaA s ponAbe2.chr12 330600 305 - 136387465 gatgtgctcagctacaagggtttgtgataaaggattgattttcttaattaatatattttataagaatcaatattattatctttaaagcaaaattagaaatgcttttgttctcaagacatggggacatcaggacactcctgggcatgggtctgtttagtaaacattattaatctgttcccttaactgtaaacatctagaggccaggaatacctcacctcctggcaatgctgtccagcaagctccagcctcattttccctcgccctcactcaagatggagtcgctttggttctaatgcctctgacaA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 286947 275 - 135371336 gatgtgctcagccacaagggtttgtgacaaaggattgattttc----ttaatatgttttataagaatcaatattattatctttaaagcaaaattagaaacggttttgttctcaaga--------------------------catgggtctgtttagtacacattactaatctgttcccttaaccgtaaacatctagaggccaggaatacctcacctcctggcaatgctgtccagcaagctccagcctcattttccctcgccctcactcaagatggagtcgctttggttctaatgcttctgacaA i panTro2.chr12 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64197234 78 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=144885.000000 s hg19.chrUn_gl000223 162381 400 + 180455 agagccagttgcatcagtgcagatgtggggattgtctctttgccctcagccgagggagcc--ctgaacaaaaaactccagcaatttttttggaccctggggt----agggagggaggggctgggagtagaaaagtaccaggtactgagtcaaagtggggaaaagtgtcttcagggttctcccccaccc-caacgaggaggtctt-gcattagcacctgagaaaggcctcaggagactggagtgcaggtgcctgggtaagaagggca---aatgtgtgagatcacgac------------------ccctgactgcagctcccctcaaagaccagagtgtgctggccgtgcaccaagtc---tcttgggagggcagttttcccctgaggcctgctgggtaaagccttggtaattgcctgtgcttacacctgaa s panTro2.chr12 287222 400 - 135371336 agagccagttgcatcagtgcagatgtggggattgtctctttgccctcagccaagggagcc--ctgaacaaaaaactccagcaatttttttggaccctggggt----agggagggaggggctgggagtagaaaagtaccaggtactgagtcaaagtggggaaaagtgtcttcagggttctcccccaccc-caacgaggaggtctt-gcattagcacctgagaaaggcctcaggagactggagtgcaggtgcctgggtaagaagggca---aatgtgtgagatcacgac------------------ccctgactgcagctcccctcaaagaccagagtgcgctggccgtgcaccaagtc---tcttgggagggcagttttcccctgaggcctgctgggtaaagccttggtaattgcctgtgcttacacctgaa i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 330905 400 - 136387465 agagcaagttgcatcagtgcagatgtgaggattgtctctttgccctcagccgagggagcc--ctgaacaaaaagctccagcagtttttttggaccctgcggt----agggagggaggggctgggagtagaaaagtaccaggtactgagtcaaagtggggaaaagtgtcttcagggttctcccccaccc-caacgaggaggtctt-gcattagcacctgagaaaggcctcaggagactggagtgcaggtgcctgggtaagaagggca---aacgtgtgagatcacgac------------------ccctgactgcagctcccctcaaagaccagagtgcgctggccgtgcaccaagtc---tcttgggagggcagttttcccctgaggcctgctgggtaaagcctttgtaattgcctatgcttacacctgaa i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64197312 383 - 94057673 agggtcaggtggatcagcacagatgtgggggtcgt-tcactgccc-------agggagcaagaggaacaggaggctctggca-tttctttggtccctggggtcaggagtgggggaagggccaggagtggaagagtagtgggttctgagtcggagtgggg-gaagtgtcttcagggttctcctctgcccgccattaggaggtcttggcagaggcacctgagaaagccctctg----ccgaag-------gcctcggataaagagacgtgtggtgcataagatcatgaccggccaggggacctgagtcctcaactgcag-ttccttcagagcct---gtgggcaaggtgtg---caggtctggtgtggggagagcagcttccccatgaggcctgccagg---------------------tggtcgcacctgaa i equCab2.chr8 I 78 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=26635.000000 s hg19.chrUn_gl000223 162781 112 + 180455 catgcactacaggttttttttgttttttttttttttgagatggagtctcgctctgtcgcctagactggagtgcagtggcacaatctctgctcactgcaagctccgcctcccg s panTro2.chr12 287622 108 - 135371336 catgcactacaggttttt----ttgtttttttttttgagatggagtctcgctctctcgcctagactggagtgcagtggcacaatctcagctcactgcaagctccgcctcccc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 331305 109 - 136387465 CATGCACTACAGGtttttgt--ttttttttttttttgagatggagtctcgctctgtcgcctagactggagtgcagtggcacgatctcagctcactgcaagctccgcctccc- i ponAbe2.chr12 C 0 I 9434 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64197695 0 - 94057673 C e canFam2.chr26 3245869 5323 + 42029645 I a score=199990.000000 s hg19.chrUn_gl000223 162893 1392 + 180455 ggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggc----ggtaccacacccagctaatttttttgtatttttagtagagacgaggtttcactgtgttagccaggatggtctcaatttcctgaccttgggatccacccacctcagtctcccaaagtgcggggattacagacgtgagccaccgtgcccggccgcactacaggtatttaaccaggagctgaactcctTGactccactccttgattttttaggacctaagtgtgaaacaggctacctcatcatggaccccaataggtcagactttgacgggccgtgacaataaccaggtaaatcgtctgaggcaacagcagaccatg--gctatgacgccactccaagcaggatggtcgggcccg---gaggactgaacatggcctcagcagtcacctcggcagttgccatgccaggaaagacgccccacagccCACTGGAGAGA--CAGAAGAAtctgtgtgaatcttctttacctggcctgaggcatcaattcaggcacagcagaacactggccaggaaactgaacgtgacctgaatgtcttccaggctgagacag-gtcctg-----------------------agtgcaatcccagagggcacacgtggtcc-cctagaaacaacgaattcacaaggtcaggtgccccagccgggcacgcacgcctcaggttgtgaggttaacagggatccaaggtggcttcccattgt---------------cgggcctctgtccagtctggatcattgggtttaggccttgacttcagagggcctgcctgggactgagttccaaaccattctgtttatccatgacatgagtttgttagtcc-caccttatca-agtgtggacagtctctggaggagttctgc-acagagcccaggagccaaggcagtcctctgcc-tctcctcgtcagcaccgtgaggaagccgaggtgtgggctcagcagacggtccaagtccacagccgccacagtc-catggaaaggcagcaagaggac-----ctcttgtgtttggttttt---taggaggaggagaaagcttttaggagcaggtctgaaaaataaagatcattattattttttccctttccctgagcctcccagatgccagttttgttttgtttttctgttacctgtgtgtcccatgtagtaatcaaaacttaagaacaaaatgtctcctgttttcattcatacgtgctgtctggaaaggttgtatacaagagggacaaaatatttttacat-----aaccaaaaagataaatcatgtttaagaattgttgagcacaaaatcctgaacttttaaaaggtttaaaaataggtttacatatctcccgtctatttgaggcttcagaaa-------ggggatgaaagggccttgcaccgtgccccgtggagtctgaggtgtctgtaa s panTro2.chr12 287730 1397 - 135371336 ggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacacccggctaatttttttgtatttttagtagagacgaggtttcactgtgttagccaggatagtctcaatttcctgaccttgtgatccacccacctcagtctcccaaagtgcggggattacagacgtgagccaccgtgcccggccgcactacaggtatttaaccaggagctgaactcctTGactccactccttgattttttaggacctaagtgtgaaacaggctacctcatcatggaccccaataggtcagactttgacgggccgtgacaataaccaggtaaatcgtctgaggcaacagcagaccatg--gctatgacgccatttcaagcaggatggtcgggcctg---gaggactgaacatggcctcagcagtcacctcggcagttgccatgccaggaaagacgccccacagccCACTGGAGAGA--CAGAAGAAtctgtgtgaatcttctttacctggcctgaggcatcaattcaggcacagcagaacactggccaggaaattgaacgtgacctgaatgtcttccaggctgagacag-gtcctg-----------------------agtgcaatcccagagggcacacgtggtcc-cctagaaacaacgaattcacaaggtcaggtgccccagccaggcacacacgcctcaggttgtgaggttaacagggatccaaggtggcttcccatcgt---------------cgggcctctgtccagtctggatcattgggtttaggccttgacttcagagggcctgcctgggactgagtaccaaaccattctgtttatccatgacatgagtttgttagtcc-caccttatcagagtgtggacagtctctggaggagttctgc-acagagcccaggagccaaggcagtcccctgcc-tctcctcgtcagcaccgtgaggaagccgaggtgtgggctcagcagacagtccaagtccacagccgccacagtc-catggaaaggcagcaagaggag-----ctcttgtgtttggttttt---taggaggaggagaaagcttttagcagcaggtctgaaaaataaagatcattattattttttccctttccctgagcctcccagatgccagttttgttttgtttttctgttatctgtgtgtcccatgtagtaatcaaaacttaagaacaaaatgtctcctgttttcattcatacgtgctgtctggaaaggttgtatacaagagggacaaaatatttttacat-----aaccaaaaagataaatcatgtttaagaattgttgagcacaaaatcctgaacttttaaaaggtttaaaaataggtttacatatctcccgtctatttGAGGCTTCAGAAA-------GGGGATGAAAGGGCCTTGCACCATGCCCCGTGGAGTCTGAGGTGTCTGTAA i panTro2.chr12 C 0 C 0 s equCab2.chr8 64197695 1212 - 94057673 ------------------------------------------------------------------------------------------------------------------------------------------------gattcac-----------------------------acag-----------------------------aggtttttaaccaagagccagactcctcaactccaccactggatctttccagacctgcacgggaagcaggctaccctgtcatggactcgaacaggtcagac-ttgaggagctatgacaggaaccagctggttaacctgaggcagcaagggccagtgccacaaagaggccactcgaggcagggtggtcaggcctgcctcaggactgaatgtg--cttg----------tgacagtttccaagtcaggagaagGGCCCT-CAGCCCCTTAGGAGGcttctcaggtttctctatgaatctttttggcctggcacaaggcatcaatt-aggcacagcacgcctctggccagtaagtggaagctggcctccaggccttccagggtgagacagtgtcacgatggttggggtacacacctcagaagtgcagtcccggagggcacatgcggtcctcctggaaaca--gagtttacagagtaagggcacccaagcag--------actttaatcagaagggttaacagggctgcagtgtggctttccattgtggccctcctgccccgggggttttagtctagtctgagtaatatagtttggtccttggttttagaggggctgcctgggc---agttccaaaccattttgtttgtccatgacctcagcttattagttcatactttatta-gatgtggaccacatctgaaatgttcctcctggaaagttcaggagctgaggccatcctctgccgtcccagagttggc-ccatcgggaggctgcattgtcggctcagcagtcagtctaaatccagagcatccacaggagcctggaaaggcagcaggggagctgtgtcttctgttttttgtttttctccagggggaggggaaagctttcaggagcaggtctgaagaacagagatcatta--atgtctccccctcccccgtcctcctagggtgctgggttttgttttttctgttattatcagtgtgtcccatttggtaatcaaaacttttttaaaaaa-attacctgtttccattcataccttttgtctggaaagactgtatgcaggaggaac-agatatttttatgtaactgaaccagaaaagtacatcacgtttaagaactggttagccaaaactcctgaattttcaaaagattttaaaatggtttCAC----------------tgaggcttcaggaagatgctgggagatggaagg--tgttcacagtgtcccgggggagctgag--ctcagtga i equCab2.chr8 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e ponAbe2.chr12 331414 9434 - 136387465 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=9991.000000 s hg19.chrUn_gl000223 164285 108 + 180455 ctggagaagaagagtgcgtgat--------------------------------ggagggcagCCTGGAGAAGAAGGACGCGTGATGGAGGGCAGCCTCGAGAAGGAG----CGTGACAGAGGGCAGCCTGGAAAAGGGCGCGT s panTro2.chr12 289127 108 - 135371336 CTGGAGAAGAAGAGTGCGTGATGGAGGGCAGCCTGGAGAAGAAGGACGTGCGACGGAGGGCAGCCTGGAGAAGAAGGACGCGCGACGGAGGGCAGCCTGGAGAAGAAG------------------------------------ i panTro2.chr12 C 0 I 2179 s ponAbe2.chr12 340848 112 - 136387465 CTGGAGAAGAAGGACGCGTGAT--------------------------------GGAGTGCAGCCTGGAGAAGAAGGACGCGTGATGGAGGGCAGCCTGGAGAAGAAGGATGCGTGATGGAGGGCAGCCTGGAGAAGGACGCGT i ponAbe2.chr12 I 9434 I 281 s equCab2.chr8 64198907 29 - 94057673 ----------------------------------------------------------------ctgtaaaaggagggcaggtaattgaagac--------------------------------------------------- i equCab2.chr8 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=10753.000000 s hg19.chrUn_gl000223 164393 51 + 180455 GACGGAGGGCAGCCCGGAGAAGAGGGACGCGTGACGGAGGGCAGCCTGGAG s panTro2.chr12 291414 51 - 135371336 GACGGAGGGCAGCCCGGAGAAGAGGGACGCGTGACGGAGGGCAGCCTGGAG i panTro2.chr12 I 2179 I 6597 s ponAbe2.chr12 341241 51 - 136387465 GACGGAGGGCGGCCCGGAGAAGAGGGACGCGTGACGGAGGGCGGCCTGGAG i ponAbe2.chr12 I 281 C 0 s equCab2.chr8 64198936 19 - 94057673 --cggatgtcttctc-----------------------------cctcgg- i equCab2.chr8 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=108615.000000 s hg19.chrUn_gl000223 164444 819 + 180455 GTACCCGtgggaagtgccctgcgggg-aacggctgcgtgaggcctgaggtcgcttgcctgagctgcgtagtccaggctgcggttatctcgtcccctcccagcagccaccgaag-----------ctgtccgttacaacagtcagttaccctgttgctcgtgagcgatacggttcctcagacgccccatgattgggcctattgatgtgtagtttggactggggctgttctcagaagcactgcgctcaggaaacctgaacgggaagcagatctggtcatgtcgggcctggatagtgtggcccaagtcagtggaatgtgtggggttggctgggccaaaccacaaggaaa---------------------CAGCGAAACATt-------------------------gatctacctgccgagaatgtcatggccgattgacctggcaatctacctttgg--gcgctgctagccttgaccagagtctggaaagcaggacagctgtttcccg-tggttcaccgtcttctgagagcagaagcag--cacacgcggaggctcggtctaggcca-tgtctgcatctctgtgggacgt-ttctcatggctccatgaggcggtcagtcacatatctgcttgctccggagtggaagacatcttagtc------tgcatttagcaagcgcagttgggtgg-ttgtgtttcctgggtcagcactggagtctttttggtgagcacccgtatgggtaacaaaatgcttcttaggagcagaactgatttttatctaaatgtctcgtcctcaggaacagaaaaccaaatgttctctgttcttatttataagtgggagcaaaacactgggtacacgtggacacgaagatggggccagtagacacagggg s ponAbe2.chr12 341292 818 - 136387465 GTACCCGTGGGAAGTGCCCGGCGGGG-AACGGCTGCGTGGGGCCTGAGGCCACTTGCCTGAGCTGCGTAGTCCAGGCTGCGGTTACTTTGTCCCCTCCCAGCAGCCACTGAAG-----------Ctatccgttacaacagtcagttaccctgttgcttgtgagcgatatggttcctcagacgccccatgattgggcctattgatgtgtagcttggactggggctgttctcagatgcagtgcgcttgggaaacctgaacgggaagcagatctggtcatgtcgggcctggatagtgtggcccaagtcagtggaatgtgtggggttagctgggccaaaccacaaggaaa---------------------CAGCGAAACATt-------------------------gatctacctgccgagaatgtcatggccaattgacctgggaatctgcctttgg--gcggtgttagccttgaccagagtctggaaagcaggacagctgtttcccg-tggttcactatcttctgagagcagaagcag--cacacgtggaggctcagtctaggcca-tgtctgcatctctgtgggacgt-ttctcgtggctccatgaggcggtcagtcacatatctgcttgctctggagtggaagacatcttactc------tgcatttagcaagcgcagttgggtggtttgtgtttcctgggtcagcactggagtc--tttggtgagcacccgtatgggtaacaaaatgcttcttaggagcagaactgatttttatctagatgtcttgtccttaggaacagaaaaccaaatgttctctgttcttatttataagtgggagcaaaacattgggtacacgtggacacaaagatgggactagtagacacggggg i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64198955 727 - 94057673 gccccagtgagaagggcccttttgggcaactgctgcctggggctccaggctgctcttccgagctgtgtgatccaggctg-ggttatcttgacccctcccgtcagccgctgaagtctggccttcactgcccattaaaa----cacttgctcagctg--tgtgggaaat-------------------------------------------------ctgggcttattct-agctgcagtgaattcaggaaagctggacaggaaacaggggtggtcttggagggcctagaccatgtggcccatgtgggtggaac-cctagggatggctatcccaatc--ccaggaaagtgtcagctgcagtcagggtccagcaaaaccctcgggacaggaccggaggcccagtgaaatccacctgtcaagaacatcctggcctgctggcaggggaacctgtccctggcagtgattttagccttggccagtgtctggaaggccagacagctctctagtgctggttcagcatcttctgatgacagtggcagcacacacgcataggcccagtccaggacagtgtctg-atctccacaggccctcctctcagggacccaagaggcgaccagtctcgtcactgcctgctccggggtggaggcggttttagtccccgtgcgtagctgacaggtgcggtcgg-----ttatgtttccta----------ggggcctttgtggtgagcatccacctgggtaacaacaagcttattaggagcagaacttatttttatccaaatgtctcatcccc----acagaa------------------------------------------------------------------------------------ggg i equCab2.chr8 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=16491.000000 s hg19.chrUn_gl000223 165263 200 + 180455 acctcaaacgtggggagggagggagggaagagggaagcctgttgggttctgtgctcaccacctgggcgacaggatcagtcgtaccccaaacctcagcattacgcagtaaacccacaaaacaaacctgcacatggacttgtggatc-----taaagaaaaagttgaaattattttttttttaaaaagtcctgtctccaccaggaac s ponAbe2.chr12 342110 204 - 136387465 acctcaaacgtggggagggagggagggaagagggaagcctgttgggttctgtgctcaccacctgggtgacaggatcagtcgtaccccaaacctcagcattacgcagtaaacccacaaaacaaacctgcacatgtactcatgactctaaaataaaggaaaagttgaaattattttttttttttaaa-tcctgtctccaccaggaac i ponAbe2.chr12 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64199682 0 - 94057673 C e canFam2.chr26 3245869 5323 + 42029645 I a score=80871.000000 s hg19.chrUn_gl000223 165463 560 + 180455 cttgttttacctgccagtctgaggctggccggcggcctgatccaatggccagggaactagccatagcctgagtcgggtggatt--cagtcttcc-tatgctgctctgtaacggccctaactgcagcagttcccatcagggact-ggggcaaaggctagcaggggtgtacatagatgggacatcagcatcaacaatacactcaggaccggggacca-catcaTAGTCCTGTAGCATCCAcagtacgttggctgtacaccacgtccgttgtggggagggcagttttcctccatgaggcccacagggtaaagccttggtgattgtttatgtttgtgcctgaaatttcgcacagacctttttaaccaggagccagcttcctcagaggagttttaaaacacgtccaagttcatgtcatcaacatcacagtcggga--cagagcggctccgtcaccacacaggaagtctgtgaggcccctctgtggccgtgcatcccttatccctggccgccactatc-tgttctctgtcactacagctttgccttttccagaatgtcctataaatggaatcat s ponAbe2.chr12 342314 561 - 136387465 cttgttttacctgccagtctgaggctggctggccacctgatccaatggccaaggaactagcgatagcctgagtcgggtggatt--cagtcttcc-tatgctgctctgtaacagccctaactgcagcagttcccatcagggactgggggcaaaggctatcaggggtgtacgtagatgagacatcagcatcaacaatacattcaggactggggacca-catcaTAGTCCTGTAGCATCCAcagtacgttggctgtacaccacgtctgttgtggggagggcagctttcctccatgaggcccacaaggtaaagccttggtgattgtttatgtttgtgcctgaaattttgcacagagctttttaaccaggagccagcttcctcagaggagttttaaaacatgtccaagttcatgtaatcaacatcacagtcagga--cagaacagttctgtcactgcacaggaacactgtgcggcccctttgtggccatgcatcccttatccctggccaccactatc-tgttctccgtcactacagctttgccttttccagaatgtcctataaatggaatcat i ponAbe2.chr12 C 0 C 0 s equCab2.chr8 64199682 512 - 94057673 ctcgtcttgtgtgctggtctgaggctcgtctgt-------------------ggTGTTAGTTATGGCCCGTGAGGCACaggttcacagtctcccacgtgcccctctgtaacggccctgactatggcagttcccgtcaggg-ctaggggcaaaggctcacccgggtgtacataaa--------------ccacagcacgttcagtaacggggaccagaataaCAGTCCTGGGGAGCCCCTagtgcactggctgtgatccg----gggtgtggggagggcagc-ttcccctgtgaggcctccc-ggcacagcctttgtaattgcctgtggtttggtctgaaaatccttg------ttttgagccaggagctggacacctcCTatgagttttaaaatgtgtgcaaattcacgtaatcaacatcacagccaggactcggaacagttccctctgcaaacaagctccccgagtctcgcctt------cccacatccc-taaccccgacagcagctggcatgttctctgtcactgcagc--tgccctctccagaatgtcatataaa-ggaattat i equCab2.chr8 C 0 I 1641 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e canFam2.chr26 3245869 5323 + 42029645 I a score=3181.000000 s hg19.chrUn_gl000223 166023 37 + 180455 gtcggctaggcacagtggctcacacctgtaatcccag s ponAbe2.chr12 342875 37 - 136387465 gtcagctaggcacagtggctcacacctatgatcccag i ponAbe2.chr12 C 0 I 2950 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 166060 3055 + 180455 tgtgtccagaatgggtgggttcttggtctcactgacttcaagaatgaagccatggaccctcacagtgagtgttacagctcttagggtggcgcgtctggagtctgtcccttctgatgttcagctgtgttcggagtttcttccttctggtgggttcgtggtctcgctggctcaggagtgaagctgcagaccttcgcggtgagtgttacagctcttaaggtagtgcgtctggagtgttcgttcctcccggtgggctcgtggtctcgctggctcaggagtgaagctgcagatcttcgcggtgagtgttacagctcataaaagcagcgtggacccacagagtgagcagtagcaagatttattgcaaagagcgaaagaacaaagcctgcacagtgtggaagaggacccgagcgggttgccactgctggctcgggcagcctgcttttattctcctatctggccccacccacatcctgctgattggtagagccgagtggcctgttttgtcagggcgctgattggtgcgtttacaatccctgagctagatacaaaggttctccacgtccccatcagattagttagatacagagtttccacacacaggttctccaaggccccaccagagcagctagatacagagtgtcgattggtgcattcacaaaccttgagcaaaacacagggtgctgattggtgtgtttacaaaccttgagctagatacagagtgccgattggtgtatttacaatccttgagctagacataaaggttctccatgtcctcaccagcagctagatacagagtgttgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtatttacaatccctgagctagatataaagactctccacgtccccaccagactcaggagcccagctggcttcacctagtggatcccgcaccggggctgcaggtggagctgcctgccagtcctgcgctgtgcgctcgcattcctcagcccttgggtggtcgatgggactgggcgccgtggagcagggggtggtgctcgtcagggaggctggggccgcatgggagcccatggagtgggtgggaggctcaggcatggcgggctgcaggtgcccagccctgccccgcggggaggcagctaaggctcggtgagaaatcgagcgcagcgccggtgggccagcactgctgggggacccagtacaccctccgcagccactggcccgggtgctaagtcccccgttgcccggggccagcagggctggctggctgctccgagtgcggcgcccaccaagcccacgcccacccggaactccagctggcccgcaagtgccgcacacagccccggttcccgctcgtgcctctccctccacacctccctgcaagctgagggagtgggctccagccttggccagcccagaaaggggctcccacagtgcagtgggggactgaagggctcctcaaatgccaccaaagtgggagcccaggcaggggaggtgccgagaacaagcgagggctctgaggactgccagcatgctgtcacctctcaccagcacttcgggaggctgaggcgggcaaatcacctgaggtcgggagttcgagaccagcctgaccaacatgtagaaaccccgtcactactaaaaatacaaaaattagcagggtgtggtggcgtgtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgctagaacccaggaggcagaggttgcagtgagtcgagatcgtgccacttcaccccagcctgggcaacagagtgagattctgtctcaaaaaaataaaaaataaaaataaaaaaataaatgggatcggcctggcacagtggctcttgcctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagattgagatcatccaggctaacagggtgaaaccccgtctctactaaaaatacaaaaagttagccgggcgtagtggcaggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggggcttgccatgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactccctctcaaataaataataaataaataaataaatgggatcacatatgtgaccttttgacagtggcttttctcacttagcatacctttgagattcattcatatcttatcggtagtttcttcctttttcttggcgtgtgattcccttgaatatgatcccatgtatggatgggccacagtctctatccattcacttattgaaggacatcttaattgttccactttttagcagttttgaataaagcattcatctgcatataggtttgaatataaattttcaggtgaatgtaagttttcagttcactacttgagtaaacacctaggagtggaattgctgcgttgtgtggtaagtctgtgttcaactttataagaaactgccaaaatgttttcaaaagctgctgtacattttacattcccaccacaatgaatgacagttgctcttgctctgagtcctcacagatatttgtcaggggtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtttagttttagccttctaataagtacatagtagtttttcattatagttttaatttgcattcaccttttgacagatatattgaacatcttttcatatatttactttccatccatacattttctttttttttttttttttttttgagacagagtttcattcttgtcgcccaggctggagtgcaatggcaccatctcggctcactgcaacctctgcctcctgggttcaagcaattatcctcccttagccttcccagtaggtaggattacaggtgcgtgtcaccatgcctggctaatttttgtatttttagtagaaatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcggcctcccaaaatgctgggattacaggcgtgagccaccgcgcccagccaccttccatatatttt e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e ponAbe2.chr12 342912 2950 - 136387465 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=35012.000000 s hg19.chrUn_gl000223 169115 1167 + 180455 ctttggtgaaatgtcaagatatcttgttaatttttaaaatgaggttattttcttagtaagagttctttatatcctggatatgagtgctttagcaagtatgtaatttgcaaataattttctcttagtctgtgccgtgccttctctttctcttaacattgtctttcacagagcaaaagttcttaattttgaaaaagtccaatttatcaaatttttttcttaaattgatcaggcttttggtgttgtatctaa----ctcattgccaaacccaaagtcacacaggttttct--------------------------ttggttttcttctaaaagttttatagttttttatgtttaggtctgtgatccattttgagttagttttgatataaggtgtgaggtatgtgttgagatccctt---ttgcttatgagtataaaattgttgagacattatttgtcacaaagact---------gtagaattgctttt-tgtacttttgtgaaacaattgagtatatttgtaggggcttatttttgagttctgtgttctgttccattaacttgtgtttttatcctttcacaaatgccatcctgccttaattactgtggttgcataggaagtcttgaaatcaagtaatgtgagtcctTTTATGTTTAAACTATTTTGAATATAAATGTGCCTCTTTCGTAGGCAGCATGTAGCTGGGGTTGCtttatattttccatttctgagcttttgctttatta-tttcttctggtctatcttccaattcacttattctctctttatc---ttttcctaatctactcttaagcccttccattgacttcttaactttacttattatgcattttatctctagaagttatatttcatttttttcaaatctgcttattcatttttatagtcttctgattatttttcgtactttcattaacctctcatttctttgaatatattaaatatatttattttatattctgtgctgacagttcaaatatcctaagtcttttATACCACT----CCTGtt----tgtttttttttggttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtagcgccatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccacgcccggctaatttttt-------------------ttttttttttta s otoGar1.scaffold_110336.1-47524 6398 1030 + 47524 ctttgcttcaaaaaaaaGGATttttgcccatttttaaaattagattgttttcttattaagaattctttacattctggat--gagtgctttagcaaataagt----tgcaaata-ctttctcttagtctatgccatgtctttcctttctcttaacattgtctttcacagagtgaaagctcctcattttgaaaaacgctaatttatcat-tttttttcttaaattgatcagggtttaggtgttgtatcaaaaaaactcattgctaaacccaagatcatacaggttttttcctcatttctaaaagatttatacttttttattttattttataagatttgtacttttttatgtttagatctgttacctattttgagttagttttgataaaaggtgtga---atgtgttgaggtttattcatttgcttataagcatacaattgttcttccaatatttgttgaaaagactcttttctctgtggtattgcttttctgtgcttttgtaaaa-aattgaatatatttgtggg--------------ctctctattctgttccattgatttatttatttattctttcacttatatcaccctgtattaataattgtggttatata--------caaaatcaagtcgtgggagtTTTTTTATGTTCAAACTACTTTTGTCTTTGATGTGCATCTCTTGTAAGCAGCATGTAGC--ATATTGCtttatattttccatttctatgtctttacttcattaatttcttttg----attttccagttcatttattccctctttatcatctttttctaatctactcttt--------------------------------------------------------tattttatttttt----------------atttttat-------------ttttTTGT----------------------------CACCCTGGATAGATTGCTATGACATCATA-GCTCACAG--CAAAc-tcctaggtagttgggactacaaggacctgccacaatgcacccagctagttttctt----------------------gttcaggctagc-------------------------------ctcgaattcctgagtttaagggatcctcctgccttggcctcccagagtgctggtgttacaggtgttagccatcatgccTt-ctaatctactcataaatccatccattgacttcttcatttta i otoGar1.scaffold_110336.1-47524 N 0 I 192 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e ponAbe2.chr12 342912 2950 - 136387465 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=0.000000 s hg19.chrUn_gl000223 170282 150 + 180455 agacagagtctcactctgtcacccaggctggagtccagtggtacgatctctgctcattgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccatgcccggctaatt e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7428 192 + 47524 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e panTro2.chr12 291465 6597 - 135371336 I e ponAbe2.chr12 342912 2950 - 136387465 I e rheMac2.chr11 288275 2964 - 134511895 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=48812.000000 s hg19.chrUn_gl000223 170432 130 + 180455 tttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctccttac--ctcgtgatccacctgcctcggcctcccaaagtgctggggttacaggcgtgagccaccgcacctggA s rheMac2.chr11 291239 107 - 134511895 -------------------------gtttccccgtgttggccgggctggtctcgaactcctgacctcaggtgatccgcccgcctcagcttcccaaaatgttgggattacaggcatgagccactgcacccagc i rheMac2.chr11 I 2964 C 0 s panTro2.chr12 298062 129 - 135371336 tttttgtacttttagtagagatggg-tttcactatgttggccgggctagtctcaaactcctgac--caggtgatctgcctgcctcggcctcccaaagtgctggggttacaggcatgagccaccgcacctggA i panTro2.chr12 I 6597 C 0 s ponAbe2.chr12 345862 129 - 136387465 tttttgtacttttagtagagatggg-tttcactatgttgaccgggctggtctcaaactcctgac--caggtgatctgcctgccttggcctcccaaagtgctggggttacaggcatgagccaccgcgcctggA i ponAbe2.chr12 I 2950 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7428 192 + 47524 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrXIII 3311302 0 - 20083130 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=109534.000000 s hg19.chrUn_gl000223 170562 116 + 180455 TGATTTTTTT---TTT--ATGTGTGCATTCCGGTTTCTCTTTTACT---CTGTACTCATTTTTCTTGAATCTTTATTTGTGAGAATTATTTTGATCTCtttctctaaatagaatt--tgcatttga s otoGar1.scaffold_110336.1-47524 7620 114 + 47524 ---TGCTTCA--ATTT--TTGTATGCAGTTTGGTATCTTTTTTACT---CCACATTCATTTTTCTTGAAACTTTATTTATGGGAATTATTTGGATCTCTTTCTGTAGATAGAATA--TACATTTGA i otoGar1.scaffold_110336.1-47524 I 192 I 6245 s tarSyr1.scaffold_449930 313 114 - 1211 TGATGTTTTA---TTT--TTGTGT-CGTTCTGATTTCTTTTTTACC---CTGTATTCATTTTTCTTGGAACTTTATTTGTGGGAATTATTTGGATCTCTTTCTTTAGGTAGAGCA--TA-ATTTGA i tarSyr1.scaffold_449930 N 0 C 0 s rheMac2.chr11 291346 118 - 134511895 cAATTTTTTT---TTTTAATTTGTGCATTCTGGTTTCTCTTTTACT---CTGTACTCATTTTTCTTGAACCTTTATTTGTGAGAATTATTTGGATCTCTTTCTCTAAATAGAATT--TGCATTTGA i rheMac2.chr11 C 0 C 0 s panTro2.chr12 298191 116 - 135371336 TGATTTTTTT---TTT--ATGTGTGCATTCTGGTTTCTCTTTTACT---CTGTACTCATTTTTCTTGAATCTTTATTTGTGAGAATTATTTTGATCTCTTTCTCTAAATAGAATT--TGCATTTGA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 345991 119 - 136387465 CTATTTTTTTGTGTGT--GTGTGTGCCTTCTGGTTTATCTTTTACT---CTGTACTCATTTTTCTTGAATCTTTATTTGTAAGAATTATTTGGATCTCtttctctaaatagaatt--tgcatttga i ponAbe2.chr12 C 0 C 0 s gasAcu1.chrUn 58149678 96 + 62550211 ------------------------------CTGTCCCTTTTCAGCTGAATTGTAGTCATTTTACTTCTGTCTGTACTTGTGTGGATGATTTCTGTATTTTTTTATCATTTTGTTTTCTGTATTCTA i gasAcu1.chrUn n 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=37305.000000 s hg19.chrUn_gl000223 170678 59 + 180455 --ttctgccggatgcctgaatgcatggccccctcaaaa-acactttagaactctctgtgctt s ponAbe2.chr12 346110 59 - 136387465 --ttctgccggatgcctgaatgcatgtccccctcaaaa-acactttagaactctctgtgctt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 298307 59 - 135371336 --TTCTGCCGGATGCCTGAATGCATGGCCCCCTCAAAA-ACACTTCAGAACTCTCTGTGCTT i panTro2.chr12 C 0 C 0 s rheMac2.chr11 291464 57 - 134511895 --TTCTGCTGGATGCCTGAATGCACGTCACTCTCAAAA-ACACTTTAGAA--CTCTGTGCTT i rheMac2.chr11 C 0 I 309 s tarSyr1.scaffold_449930 427 59 - 1211 --TTCTGCTGAAAGTCTGGATGCATTTCCAACCCTAAA-CCCCTTTAAAACTTTATATGCTT i tarSyr1.scaffold_449930 C 0 C 0 s gasAcu1.chrUn 58149774 62 + 62550211 GTTGGTAATAAATACGTAATCACAAAGCAAGCTCAAGATACTTTTGATATCTCACCAGGTCT i gasAcu1.chrUn C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=17967.000000 s hg19.chrUn_gl000223 170737 28 + 180455 aaggtt-----tttgcaaaacacatctatactg s panTro2.chr12 298366 28 - 135371336 AAGATT-----TTTGCAAAACACATCTATACTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 346169 28 - 136387465 aaggtt-----tttgcaaaacacatctctactg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 291830 28 - 134511895 aaGGTT-----TTTGCAAAACACATCTATACTG i rheMac2.chr11 I 309 C 0 s tarSyr1.scaffold_449930 486 17 - 1211 AAGGTT-----TTTGCAAAACA----------- i tarSyr1.scaffold_449930 C 0 C 0 s gasAcu1.chrUn 58149836 33 + 62550211 AAATCTACAAATTTCCACCACAAACATATCCTG i gasAcu1.chrUn C 0 I 1021 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=103332.000000 s hg19.chrUn_gl000223 170765 158 + 180455 gagttgagcccacacacccatataaatctagcttgttataa------ttctcagggacaatttttgacctctttgtgtaacactaacatttgaggcaagaaattgattttctttgatttt--tttttcattgacccacacacggagtactcctt--gtgttccagctt s panTro2.chr12 298394 158 - 135371336 GAGTTGAGCCCACACACCCATATAAATCTAGCTTGTTATAA------TTCTCAGGGACAATTTTTGACCTCTTTGTGTAACACTAACATTTGAGGCAAGAAATTGATTTTCTTTGATTTT--TTTTTCATTGACCCACACACAGAGCACTCCTT--GTGTTCCAGCTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 346197 155 - 136387465 gagttcagcccacacacccatataaatctagcttgttataa------ttctcagggacaatttttgacctc--tgtgtaacactgacatttgaggcaagaaattgattttctttga-ttt--tttttcattgacccacacacagagtactcctt--gtgttccagctt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 291858 160 - 134511895 GAGTTCAGCCCATACACCCATATAAATCTAGCTTGTTATAA------TTCTCAGGGACCATTTCTGACCTCTTTGTGTAACACTAACATTTGAGGCAAGAAATTAATTTTCTTTGATTTTTATTTTTCATTTACCCACACACAGAGTACTCCTT--GTCTTCCAGCTT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_449930 503 156 - 1211 ----------CACACACCCATATAAATCTACCTTGTCTTTAAGGATTATTTAGGGGACAATTTTTGACAGCCTTGTGTAACA--GAGGTCTGAGACAAGAAATTAATTTTGTTTGATGTTTATTTTTTATTGATCCAGGCACTGAAGACCCCTTTGGAGCTCTACCTT i tarSyr1.scaffold_449930 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 145694 460 - 3408981 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=122342.000000 s hg19.chrUn_gl000223 170923 132 + 180455 tatgagggaaaataacctattagtcccctatgcttgggcttattctaagctttcctcctttttcctg--------tgtcccttgtagctgctgggactggaatgctcaaatttacttgagtccagctgaaggctggc-------ctc s loxAfr3.scaffold_113 146154 139 - 3408981 taagacaGGAAATATCCTATTAGAGTTCCATTCTTGGACTTGCCAGAAACCTCTTTCCTCTCTTCTG--------TGTCTTTTGTAGCTGTTGAGAGGAGAATGCTCAGATTTACCTGTGTTCAGGTGAAAGCCGTCCAGAGTGCTC i loxAfr3.scaffold_113 I 460 C 0 s panTro2.chr12 298552 132 - 135371336 TATGAGGGAAAATAACCTATTAGTCCCCTATGCTTGGGCTTATTCTAAGCTTTTCTCCTTTTTCCTG--------TGTCCCTTGTAGCTGCTGGGACTGGAATGCTCAAATTTACCTGAGTCCAACTGAAGGCTGGC-------CTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 346352 132 - 136387465 tatgagggaAGATAACCTATTAGTCCCCTGTGCTGGGGCTTATTCTAAGCTTTCCTCCTTTTTCCTG--------TGTCCCTTGTAGCTGCTGGGACTGGAATGCTCAAAATTACCTGAGTCCAACTGAAAGCTGGC-------CTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 292018 132 - 134511895 CATGAGGGAAAGTAACCTATTAGTCCTCTATGCTTGGGCTTGTTCTAAGCCTTTCTCCTTTCTTCTA--------TGTTCCTTGTAACTGTTGGGACAGGAATGTTCAAATTTACCTGAGTCCAAATGGAGGTTGGC-------CTC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_449930 659 139 - 1211 TATGAGGGAAGATATCTTATTAGAGCTCTGTTCTTGGGCTTGCTCTAAGCTTTTCTCCTTTCTCCTGTGTCCTTTTGTCCTTTGTAGCTGTTGGG-CTAGAATGCTCAAATTTCTCTGCATTCAAGTGAAAGCTGAT-------CTG i tarSyr1.scaffold_449930 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr17 2777755 0 - 49469313 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=69166.000000 s hg19.chrUn_gl000223 171055 191 + 180455 tgcttacctctctaggtttccacgttcccttt-tAAAGAGGCC-AGGACCATTCCCACCGCTCCCACTCCC------TCTCTTATATTCCTGAACTTTC----ATCCCTCAGA--AAACACACTT-TGTTTCCATG-------------------------------------TCTTTGCTCATGCTGCTGCCTTGAGAGTGTCCTTTTCCTCATCCCCCTCTGTAACC----AGGACTTTCTAAAG s tarSyr1.scaffold_449930 798 82 - 1211 TGTTT----------------------------------------------------CAGCTTTCATttta------ttttttaatttttgtaattttt----a-------------------tt-tatttttgag----------------------------------------------------------ttggagtctc--------------actctgtcacc----cagactg------- i tarSyr1.scaffold_449930 C 0 C 0 s rheMac2.chr11 292150 197 - 134511895 TGCTTACCTCTCAAGTTTTCCCCTTTCCCTTT-TAAAGAGGCC-AGGACCTTTCCCACCGCTGCCACTCCCACCTCGTCTCTTATATTCCTGAACTTTC----ATCCCTGAGA--AAACACACTC-TGTTTCCATG-------------------------------------CCTTTGCTCATGCTGCTGCCTTGTGAGTGTCCTTTTCCTCATCCCCCTCTGTGACC----AGGACTTTCTAGAG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 346484 182 - 136387465 TGCTTACCTCTCTAGGTTTCCACTTTCCCTTT-TAAAGAGGCC-AGGACCATTCCCACTGCTCCCACTCCC------TCTCTTATATTCCTGAACTTTC----ATCCCTCAGA--AAGCACACTT-TGTTTCCATG-------------------------------------CCTTTGCTCATGCTGCTGCCTTGAGAGTGTCCTTTT---------CCTCTGTAACC----AGGACTTTCTAAAG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 298684 191 - 135371336 TGCTTACCTCTCTAGGTTTCCACTTTCCCTTT-TAAAGAGGCC-AGGACCATTCCCACCGCTCCCACTCCC------TCTCTTATATTCCTGAACTTTC----ATCCCTCAGA--AAACACACTT-TGTTTCCATG-------------------------------------CCTTTGCTCATGCTGCTGCCTTGAGAGTGTCCTTTTCCTCATCCCCCTCTGTAACC----AGGACTTTCTAAAG i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 146293 240 - 3408981 CACTTACCTCTCTAGATTCCAGCTTCCACTTTATAAAAGGGCCTGGGATTGTTTCCA-TGCTCTCCCACCC------TGCGTTATGTTATTGAGCTCTTTACAGTCACTCAGATGAACTGTGCTTGTTTTTTtatgagtcggaatggactcgacggcaacagttggtttttttttttTGCTCATGCTACTACCTCTGGAATGTCCTTTCCTCCACAGCCCTGTGTAACCCGTTAGTGCTTTCCTAAG i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 28726310 162 + 71658100 TACATGCGCTTTTTGTTTCTCACAGCCAGTCG-TTAAGATTAC----ACTGCTCATCTCGACCCGACTTCT------CTACTCGTATCCCCGCACTGCA----ACAGTTCAGT--CAACTTCTCT-TTCTTCTACA-------------------------------------CACCACATAATGCTGCCCTCTTCAACTCTCCTCTTTCTTTATAC------------------------------ i danRer6.chr4 n 0 n 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I e canFam2.chr26 3245869 5323 + 42029645 I a score=17085.000000 s hg19.chrUn_gl000223 171246 49 + 180455 ACCCTTTCTAAGCCTTACTGTCTTTACAG-----CACCTAACCCAGTGTTGTTA s panTro2.chr12 298875 49 - 135371336 ACCCTTTATAAGCCTTACTGTCTTTACAG-----CACCTAACCCAGTGTTGTTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 346666 49 - 136387465 ACCCTTTTTAAGCCTTACTGTCTTTATAG-----CACCTAACCCAGTGTTGTTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 292347 48 - 134511895 ACCCTTCATAAGCCTTACT-TCGTTATAG-----CACCTGAGTCAGTGTTGTCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_449930 880 1 - 1211 -----------------------------------------------------g i tarSyr1.scaffold_449930 C 0 C 0 s canFam2.chr26 3251192 54 + 42029645 accttgtcttagtacctgtggcttcataggaagtctcaaaacccggtcatgtga i canFam2.chr26 I 5323 C 0 s loxAfr3.scaffold_113 146533 49 - 3408981 ACCCTTTGTAAGCTTTACCCTCTTCTTAT-----TGCCTAAATTAATGTCCACA i loxAfr3.scaffold_113 C 0 I 181 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 317865 10726 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64200194 1641 - 94057673 I a score=50333.000000 s hg19.chrUn_gl000223 171295 157 + 180455 AATC-----CAGTGTTTTTATCCCCG-------------TTTT-GTCTCTATATTC--------------------TGTAAATGCTAGCTTCATAGCC---C-TGTA--ACCT-TATTCACT----------------CTGGCCTGAAAG---------GTACTTGAGAATGTGATTTTTCTCTACTCATTTTTAAATTTCTAGTACCTGTTATGGTTCCTGGAATCC s panTro2.chr12 298924 157 - 135371336 AATC-----CAGTGTTTTTATCCCCG-------------TTTT-GTCTCTATATTC--------------------TGTAAATGCTAGTTTCATAGCC---C-TGTA--ACCT-TATTCACT----------------CTGGCCTGAAAG---------GTACTTGAGAATGTGATTTTTTTCTACTCATTTTTAAATTTCTAGTACCTGTTATGGTTCCTGGAATCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 346715 157 - 136387465 AATC-----CAGTGTTTTTATCCCCA-------------TTTT-GGCTCTATATTC--------------------TGTAAATGCTAGTTTCATACCC---C-TGTA--ACTT-TATTCACT----------------CTGGCCTGAAAG---------GTACTTGAGAATGTGATTTTTTTCTACTCATTTTTAAAATTCTAGTACCTGTTATGGTTCCTGGAATCt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 292395 157 - 134511895 AATC-----CAGTGTTTTTATCCCTG-------------TTTT-GTCTCTATATTC--------------------TGTAAATGCTAGTTTCATAGTC---C-TGTA--ACCT-TATTCACT----------------CTGGCCTGAAGG---------GTACTTGAGAACATGATATTTTTCTACTCATTTTTAAATTTCTGATACGTGTTATGGTTCCTGGAATCT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_449930 881 28 - 1211 agtg-----cagtg------------------------------------------------------------------------------------------------------gccact----------------cc-------------------------------------------------------------------------tggcccccgca---- i tarSyr1.scaffold_449930 C 0 C 0 s canFam2.chr26 3251246 167 + 42029645 atcctgcaacattgttcttttccCACTTGTTCGTTTGCCTTTTG--TCCCAAGCCT--------------------TCTATATCCTTGTGTCATGGCC---TCTGTGACACTT-TATTT-------------------TTTTCTTGAAAAGACTGAAACAT-TTTAAGAACATGA--TTTTTATTC---TATTCATATTTCTAGCACCTCTTATAGTT---------- i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 146763 205 - 3408981 AAAT-----CACTGCTTTTATGCCTC-------------TTTT-GTCCCTGTACTCTGTATATTCTTCTCTAACTCTGTATATTCTTCTCTAATAGCCACTC-TGAA--ACCT-TACTGCCTTTGCACGGGTAGACTGTTGGCCTGAAAAGACTAAGAAGTATTTGAAAGTATGAATTTTTTCTGCTCATCTTTGTATTTCTAGCACCTATTACAGTTCCTGGGACCC i loxAfr3.scaffold_113 I 181 C 0 s equCab2.chr8 64201835 130 - 94057673 ----------------------------------------tttGGCCCCCATACCC--------------------TGTATACACTGGTTTCGTGGCC---CGTGTAACACCT-TCTTGCCA----------------CTGGCCTGAGGAGACTGAAAAATATTTAAGAACATGA--TTTTTCTACTCATCTTTGTATTTCTAGGACCTGTT---------------- i equCab2.chr8 I 1641 C 0 s cavPor3.scaffold_248 328591 135 + 667635 --------------------------------------------GTCTCCAGCTTC-----------------------AGCTGCTCCCTACAT--CT---C-TGTA--CCATGTGTTACCC----------------CTGCCCTGAAAG--TCTAAAAATACTTTTAAGTGTGATTTTTTTGTACTCATTTTTATATTTCTAGACCCTCTTAGAGTTTCTAGAACCT i cavPor3.scaffold_248 I 10726 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=-878.000000 s hg19.chrUn_gl000223 171452 30 + 180455 ttttttttt--tttttttttt------------agacggaatct s tarSyr1.scaffold_449930 909 4 - 1211 ----------------------------------------gcct i tarSyr1.scaffold_449930 C 0 C 0 s rheMac2.chr11 292552 42 - 134511895 tttttcttt--tcttttcttttttttttttttgagatggaatct i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 346872 33 - 136387465 ttttttttt--tttttttttt---------ttaagacggtatct i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299081 22 - 135371336 ttttttttt--tt--------------------agacggaatct i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 328726 32 + 667635 TAATTGATCAATATCTGTTTT------------AGAAGAGAGCT i cavPor3.scaffold_248 C 0 I 2841 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 146968 0 - 3408981 C e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64201965 0 - 94057673 C e canFam2.chr26 3251413 0 + 42029645 C a score=167693.000000 s hg19.chrUn_gl000223 171482 267 + 180455 tgctctgtca-ccaggctggagtgcagcggcacaatctcagctcactgcaacctctaccttctgggttcaagctattctcctgtctcagcctcccgagtagctgggattacaggcacacaccaccacacttggctaatttttgtatttttagtagagatggggttttacagtgctggccaggctggtctccaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgagatttcaggtgtgagccaccacacccag s tarSyr1.scaffold_449930 913 211 - 1211 cgacctgctg------------------------------------------------------agttccggcaatccttccgcctcagccttccgagtagctggaactacaggcatgcactaccacacctggctga-ttttttatttattgtagagatgaggtctcaccaagttgcccaggcgggtctcgaacccgcgggctcaggcagtccactcacctcagcctcccaaggcgc-gggattacaggc-tgagctaccgagcccag i tarSyr1.scaffold_449930 C 0 C 0 s rheMac2.chr11 292594 266 - 134511895 tgctctattgtccaggctggagtgcagtggcgcaatcttggctcactgcaacctccacctccagggttcaagggattctcctgtctcagcctcccgagtagctgggattacaggcatgcaccaccacgcttggctaa-ttttgtatttttaatag-gatggggtttcaccatgttgaccaggctggtctccaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgctggaatttcaggagtgagccactgcacccag i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 346905 267 - 136387465 tgctccgtca-ccaggctggagtgcagtggcacaatctcagctcactgcaacctctgccttctgggttcaagctattctcctgtctcagcctcccgagtagctggcattacaggcatacaccaccatacttggctaatttttgtatttttagtagagacggggttttacagtgttggccaggctggtctccaactcttgacctcaggtgatccacccgcctcggcctcccaaagtgctgagatttcaggtgtgagccaccgcacccag i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299103 267 - 135371336 tgctctgtca-ccaggctggagtgcagcggcacaatctcagctcactgcaacctcaaccttctgggttcaagctattctcctgtctcagcctcccgagtagctgggattacaggcacacaccaccacacttggctgatttttgtatttttagtagagatggggttttacagtgctggccaggctggtctccaactcctgacctcaggtgatccacccaccttggcctcccaaagtgctgagatttcaggtgtgagccaccgcacccag i panTro2.chr12 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 146968 0 - 3408981 C e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 328758 2841 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64201965 0 - 94057673 C e canFam2.chr26 3251413 0 + 42029645 C a score=80990.000000 s hg19.chrUn_gl000223 171749 64 + 180455 ATGGTTCCTGGAATCTTAATTGCTCAATATGTGTGTTTTGGAAGATACCTAAAATAGCTGGCCA s canFam2.chr26 3251413 57 + 42029645 ------TGGGGAGCCTTAGTTGCACAATACGTGTATTCCAGAAGAT-CCAGAAGGGGCTAGCTA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64201965 64 - 94057673 ACAGTGCTGAGAACCTTAATTGCTCAGTGTCCATGTTCTAGAAGACGTCTACAGGAGCTAGCTA i equCab2.chr8 C 0 C 0 s tarSyr1.scaffold_449930 1124 62 - 1211 ctAGTT-CTAGAATCTTAATTGTTTGATATATGTGTTTTACAAGATATCTAAAATC-TTGGCTA i tarSyr1.scaffold_449930 C 0 C 0 s rheMac2.chr11 292860 64 - 134511895 ATAGTTCCTGGAATCTTAATTGCTCAATACGTGTGTTTTGGAAGATATCTAAAATAGCTGGCCA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 347172 64 - 136387465 ATGGTTCCTGGAATCTTAATTGCTCAATATGTGTGTTTTGGAAGATACCTAAAATAGCTGGCCA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299370 64 - 135371336 ATGGTTCCTGGAATCTTAATTGCTCAATATGTGTGTTTTGGAAGATACCTAAAATAGCTGGCCA i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 146968 48 - 3408981 ----------------TAACTGCTTACCATATGTGTTCTAGATGATATCTAAAAGAACTAGACA i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 328758 2841 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=39546.000000 s hg19.chrUn_gl000223 171813 53 + 180455 GTT---CTTAC--TTGGGAGCAGAATCACTCC-CAGAGGAAAGAGAGTGtttttgtttt s tarSyr1.scaffold_449930 1186 25 - 1211 GTTGTTCTTAC--TTGAGGACAAAACC-------------------------------- i tarSyr1.scaffold_449930 C 0 N 0 s rheMac2.chr11 292924 56 - 134511895 GTTGTTCTTAC--TTGGGAGCAGAATCACTCC-CAGAGGGAAGACAGTGGttttttgtt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 347236 56 - 136387465 GTTGTTCTTAC--TTGGGAGCGGAATCACTCC-CAGAGGGAAGAGAGtgtttttgttgt i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299434 56 - 135371336 GTTGTTCTTAC--TTGGGAGCAGAATCACTCC-CAGAGGAAAGAGAGTGTTTTTGTCtt i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 331599 53 + 667635 ---GTTCTGAT--TTGAGAGCAGAACTACCCC-TAGAGGAAGGAAAGTGCCTTTTCTTT i cavPor3.scaffold_248 I 2841 I 4 s equCab2.chr8 64202029 46 - 94057673 -TTGTTCCAAC--TTGGGAGCAGAACCATCCC-C-GAGGGAGGAGAGTTTT-------- i equCab2.chr8 C 0 I 27 s canFam2.chr26 3251470 37 + 42029645 -GTCCTCATAATGTCTGGTGCAGAGCCA-------GACGGAGGGG-------------- i canFam2.chr26 C 0 I 18 s loxAfr3.scaffold_113 147016 48 - 3408981 ---GTTCCTGT--TGGGGAGCAGAAGCGCCCCACTGAGGGAGGAGAGTGTTTT------ i loxAfr3.scaffold_113 C 0 I 25 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=84593.000000 s hg19.chrUn_gl000223 171866 193 + 180455 tgttgttgtt--tatttatttatttatttatttgagacagagtcttgctctgttgcccaggctgca-tgcaggtgcacgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctccctggtagctgggattacaggtgcccaccaccacccccagctaa-tttgtgt------------gtgtgtg s panTro2.chr12 299490 188 - 135371336 tgttgttgtt-------gtttatttatttatttgagacagagtcttgctctgttgcccaggctgca-tgcaggtgcacgatcttggctcactgcaacctccacctctcaggttcaagtgattctcctgcctcagcctccctagtagctgggattgcaggcgcccaccaccacccccagctaa-tttgtgt------------gtgtgtg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347292 207 - 136387465 tgttgttgttgttgttTAtttatttatttatttgagacacagtcttgctctgttgcccaggctgca-tgcaggtgcacgatcttggctcactgcaacctccacctcccaggttcaagtgattctcatgcctcagcctccctagtagctaggatttcaggtgcccaccaccacccccagctaa-tttgtgtgcatgtgtgtgcgtgtgtg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 292980 185 - 134511895 tgtt-ttgtt-----------atttatttatttgagatagagtctcgctctgttgcccaggctggagtgcaggggtgcaaccttggctcactgcaacctccatctcctaggtttaagtgattcttctgcctcagtctccctagtagctgggattacaggcacccgccaccatgcctagctaaGTGTGTGT------------GTGTGTG i rheMac2.chr11 C 0 M 151 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 147064 25 - 3408981 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e cavPor3.scaffold_248 331652 4 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64202075 27 - 94057673 I e canFam2.chr26 3251507 18 + 42029645 I a score=38227.000000 s hg19.chrUn_gl000223 172059 142 + 180455 catgtgtgtgtgtgtgtgtgtttaatagagttggggtttcaccatgttggccaggctggtcttgaattcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgggattacaggcataagccaccgtgcccagc s ponAbe2.chr12 347499 142 - 136387465 tgtgtgtgtgtgtgtgtgtgtttagtagagatggggtttcgccatgttggccaggctggtcttgaattactgacctcaggtgatccgcccacctcagcctcccaaagtgctgggattacaggcataagccaccatgcccagc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299678 142 - 135371336 catgtgtgtgtgtgtgtgtgtttaatagagttggggtttcaccatgttggccaggctggtcttgaattcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgagattacaggcgtaagccaccgtgcccagc i panTro2.chr12 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 147064 25 - 3408981 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293165 151 - 134511895 M e cavPor3.scaffold_248 331652 4 + 667635 I e bosTau4.chr17 30027628 15413 - 76506943 I e equCab2.chr8 64202075 27 - 94057673 I e canFam2.chr26 3251507 18 + 42029645 I a score=47332.000000 s hg19.chrUn_gl000223 172201 42 + 180455 cAGTGACTGAGAGATATTACTGTCA-TTAGCAGACAGAGGCCA s rheMac2.chr11 293320 41 - 134511895 -AGTGACTGAGAGATATTACTGTCA-TTAGCAGACAGAGGCCA i rheMac2.chr11 M 151 C 0 s cavPor3.scaffold_248 331656 38 + 667635 ----GACCAGGAAGTGTGACTGTCA-TTTGCAAATAAAGTCCA i cavPor3.scaffold_248 I 4 C 0 s canFam2.chr26 3251525 42 + 42029645 -AGAAACCAAAAAATATGACTGTTGTTTGGCAGATGGGTGCCA i canFam2.chr26 I 18 C 0 s equCab2.chr8 64202102 41 - 94057673 CAGTGACTGAGAA--GTTACTGTCATTTGGCTGGTGGGGGCCA i equCab2.chr8 I 27 C 0 s ponAbe2.chr12 347641 42 - 136387465 cAGTGACTgagagatattactgtca-ttagcagacagaggcca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299820 42 - 135371336 cAGTGACTGAGAGATATTACTGTCA-TTAGCAGACAGAGGCCA i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 147089 26 - 3408981 -----------------tgctgtctgttagtgggtagaggcca i loxAfr3.scaffold_113 I 25 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=25450.000000 s hg19.chrUn_gl000223 172243 45 + 180455 GGCATGCTGAAGGGCTCA-ACTGCATGGA----------A-CAGTATTCCTTACCTA s rheMac2.chr11 293361 45 - 134511895 GGCATGCTGAAGGGCTTA-ACTGCATGGG----------A-CAATGTTGCTTAGCTA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 347683 45 - 136387465 ggcatgctgaagggctca-actgcattgg----------a-cagtattccttaccta i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 299862 45 - 135371336 GGCATGCTGAAGGGCTCA-ACTGCATGGA----------A-CAGTATTCCTTACCTA i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_125068 18 43 + 6413 GGTATGCTGAAGGTCTT--ACTGCATTGG----------G-CAGTCTTGCTCAGTT- i tarSyr1.scaffold_125068 N 0 I 385 s cavPor3.scaffold_248 331694 45 + 667635 AGCATCCCAGAGGTCTTGTACT--ATGGG----------ACCATTCCTGCTTAGCTA i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3251567 52 + 42029645 GGCATGTGGAATATCTGACAGTAGGTGGGACTCGGATAAG-AATTCTTCCCA----A i canFam2.chr26 C 0 I 180 s equCab2.chr8 64202143 41 - 94057673 GGCAGGCTGAG-GTCTCACCCTGCTTGGG----------G-AGATCTTGCTC----A i equCab2.chr8 C 0 I 4 s loxAfr3.scaffold_113 147115 38 - 3408981 ggtctgcatac--------agtgcctggg----------g-cagtcctgctcagcaa i loxAfr3.scaffold_113 C 0 I 11 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 28726472 0 + 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e bosTau4.chr17 30027628 15413 - 76506943 I a score=95442.000000 s hg19.chrUn_gl000223 172288 49 + 180455 AGAATGGTTCTCAAATACTAGTGGCACCTTCTTTGAGAACCACTGTA-TT s canFam2.chr26 3251799 49 + 42029645 AGAATTCTTCCCAAATACCAGTGGCACTGTCCTTGAGAAGCACTGTG-CT i canFam2.chr26 I 180 I 210 s equCab2.chr8 64202188 47 - 94057673 -AAATTGTTCCC-AATACCAGTGGCACTTCCTTTGAGGAACACTGTG-CT i equCab2.chr8 I 4 I 1 s bosTau4.chr17 30043041 48 - 76506943 AGAATTATTCCCAAATCCCAGTGGCACCTTCTTTGAGAAACACTGCT-T- i bosTau4.chr17 I 15413 C 0 s cavPor3.scaffold_248 331739 48 + 667635 AGAACTGCTCTCAAATACCAGTGGCAC--TCTTTGAGAACCACTGTGCTT i cavPor3.scaffold_248 C 0 C 0 s tarSyr1.scaffold_125068 446 41 + 6413 AGAATTGTTCTCAAATACCAATGTTACCCTCTTTGGGAACC--------- i tarSyr1.scaffold_125068 I 385 I 996 s panTro2.chr12 299907 49 - 135371336 AGAATGGTTCTCAAATACTAGTGGCACCTTCTTTGAGAACCACTGTA-TT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347728 49 - 136387465 agaatggttcTCAAATACTAGTGGCACCTTCTTTGAGAACCACTGTA-TT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 293406 49 - 134511895 AAATTGGTTCTCAAATACCAGTGGCACCTTCTTTGAGAACCACTGTG-TT i rheMac2.chr11 C 0 C 0 s danRer6.chr4 5712050 33 - 71658100 ----------------ACCAGTGATTCCTACTTTGTGTCCTTCTGGA-GT i danRer6.chr4 n 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e loxAfr3.scaffold_113 147153 11 - 3408981 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=69893.000000 s hg19.chrUn_gl000223 172337 32 + 180455 GTTTA-AAGACAACCTATTCTGGTTTCTTGTTC- s tarSyr1.scaffold_125068 1483 32 + 6413 ATTTA-CTGAGAGCCTATTCACGTTTCTTATTC- i tarSyr1.scaffold_125068 I 996 C 0 s panTro2.chr12 299956 32 - 135371336 GTTTA-AAGACAACCTATTCTGGTTTCTTGTTC- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347777 32 - 136387465 GTTTA-AAGACAACCTATTCTGGTTTCTTGTCC- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 293455 32 - 134511895 GTTTA-AAGACAACCTATTCTGGTTTCTTGTTC- i rheMac2.chr11 C 0 C 0 s cavPor3.scaffold_248 331787 29 + 667635 AACTA-AAGACAGCCTCCTC---TTTCATATTC- i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30043089 32 - 76506943 GTTTA-AAGACAGCCTATTCCAACTTCTTATCC- i bosTau4.chr17 C 0 I 4 s equCab2.chr8 64202236 33 - 94057673 GTTTAGAAAAAAACCTATTCCAATTTCTTATTC- i equCab2.chr8 I 1 I 4 s canFam2.chr26 3252058 32 + 42029645 GCTTA-AACACAATGTAGTCTAAtttctttctt- i canFam2.chr26 I 210 I 240 s loxAfr3.scaffold_113 147164 28 - 3408981 ----A-AAGACAACCTATTCCAATTTCTTACTC- i loxAfr3.scaffold_113 I 11 C 0 s danRer6.chr4 5712083 31 - 71658100 GTTTA-AAACTAATTCATTT--ATTTATTAATTT i danRer6.chr4 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=37867.000000 s hg19.chrUn_gl000223 172369 49 + 180455 ----AGTGGA-TAGGTACATGGATGAATG---------------------------------------------------------------------AATTCA------------------------------------------------------CAAT----GATAAATATTTTTAA------ s tarSyr1.scaffold_125068 1515 30 + 6413 ----A----A-TAGGTGGATAGATGGATG---------------------------------------------------------------------AATTTA------------------------------------------------------CAAT------------------------- i tarSyr1.scaffold_125068 C 0 I 189 s panTro2.chr12 299988 49 - 135371336 ----AGTGGA-TAGGTACATGGATGAATG---------------------------------------------------------------------AATTCA------------------------------------------------------CAAT----GATAAATATTTTCAA------ i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347809 49 - 136387465 ----AGTGGC-TAGGTACATGGATGAATG---------------------------------------------------------------------AATTCA------------------------------------------------------CAAT----GACAAATATTTTTAA------ i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 293487 49 - 134511895 ----AGTTGA-TAGGTAGATGGATGAATG---------------------------------------------------------------------AATTCA------------------------------------------------------CAAT----GATAAATATTTTTAa------ i rheMac2.chr11 C 0 I 1411 s cavPor3.scaffold_248 331816 173 + 667635 ----TATGGACTGGATAAATAACTCAATGATAGATAttttcttttcttttcttttcttttcttttTGTCTTTTTCAtttttatcggtaccggggatccaactcacgaccacctgcttgcaaggcaggtgcttatgccgctgagctaaatccccagccccAAT----GATAGATATTTTCAT------ i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3252330 46 + 42029645 ----GATAGG-TAGATGGATAGATGAGTG---------------------------------------------------------------------AATTCA------------------------------------------------------AAAT----GATAAATATCT---T------ i canFam2.chr26 I 240 C 0 s equCab2.chr8 64202273 49 - 94057673 ----GATAGA-TGGGTGGATAGATGAATG---------------------------------------------------------------------AATTCA------------------------------------------------------TAAT----GGTAAATATTTTAAT------ i equCab2.chr8 I 4 C 0 s bosTau4.chr17 30043125 49 - 76506943 ----GGTAGA-TGGGTGGATAAGTTTATG---------------------------------------------------------------------AATTCA------------------------------------------------------TAAT----GATGAATATTTTAAT------ i bosTau4.chr17 I 4 C 0 s loxAfr3.scaffold_113 147192 45 - 3408981 --------AA-TGGATTGGTGCGGGGATG---------------------------------------------------------------------AATTCA------------------------------------------------------CAAT----GATAAATATTTTAAT------ i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 5712114 63 - 71658100 AGCAAACAGA-TTGAAGATTCTATAAAAG---------------------------------------------------------------------ATTTTA------------------------------------------------------GATCTTTAGATAGAGATTTTAGATTCTAG i danRer6.chr4 C 0 C 0 e tupBel1.scaffold_78714.1-13947 5099 3308 - 13947 I e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=53951.000000 s hg19.chrUn_gl000223 172418 70 + 180455 AACA------TTCCTTCCTC-------AAGGCATAA---TGCAAGattattatatttattatattaGATtatattg-gttattcatt s tarSyr1.scaffold_125068 1734 59 + 6413 AACATTT---TTTCTCCCTC-------AAAGTATAA---TGTAAGATTAGGAT--------------ATtgtataa-attatccatt i tarSyr1.scaffold_125068 I 189 C 0 s panTro2.chr12 300037 70 - 135371336 AACA------TTCCTTCCTC-------AAGGCATAA---TGCAAGATTATTATGTTTATTATATTAGATtatattg-gttattcatt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347858 70 - 136387465 AACA------TTCCTTCCTC-------AAGGCGTAA---TGCAAGattattatttttattatattatattatattg-gttattcatt i ponAbe2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 8407 50 - 13947 ATCGTTTTTGTTTCTCCCTC-------AAAACATAA---TAGAAGATTAGGAt---------------------------attaatt i tupBel1.scaffold_78714.1-13947 I 3308 C 0 s cavPor3.scaffold_248 331989 62 + 667635 AATACTTTTGTTTATCTGTC-------AAAGCATAA---TGTGCAATTAGTAT--------------ATCAGGtta-gttatccata i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3252376 60 + 42029645 AACATATTTGTT--TCTCTT-------GAGGTATAA---TGTAAGATTAGGAT--------------GTtatatta-aatatcaatt i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202322 62 - 94057673 AACATTTTTGTTTCTCTCTC-------AAAGTGTAA---TGCAAGATTAGGAT--------------ATGAtatta-gttatccatt i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043174 55 - 76506943 AACTCTTTTGTTTTTCTCTC-------AAAGTATAATAGTGCAAGATTAGGAT--------------ATCATTtta----------- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 147237 64 - 3408981 AGCAATTTAGTTTATCCCTC-------AAAGTATAA---TTCCAGATGAGTGTGtgttatggattgaattgtgt------------- i loxAfr3.scaffold_113 C 0 I 1090 s danRer6.chr4 5712177 77 - 71658100 ------ATTCTTCTTCCCCCTGCATTAAAACAACAG---TGAACATTAATTAT-TTAAATGCATTACTTAGTAATAAAATGTACATT i danRer6.chr4 C 0 C 0 e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293536 1411 - 134511895 I a score=76708.000000 s hg19.chrUn_gl000223 172488 53 + 180455 ---attgtgt--cacaaattaccccaaacctcaagggctgaaaacaacaaacattgat s tarSyr1.scaffold_125068 1793 48 + 6413 ---cttgtgt--aacaaatt-----aaacctcagtgtctgaaagcaacaaacctgtca i tarSyr1.scaffold_125068 C 0 C 0 s panTro2.chr12 300107 53 - 135371336 ---attgtgt--cacaaattaccccaaacctcaagggctgaaaacaacaaacattgat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347928 53 - 136387465 ---attgtgt--cacaaattaccccaaacctcaagggctgaaaacaacaaacattgat i ponAbe2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 8457 51 - 13947 ---gtcacat--gagaaattaccccatacctcagtggctgaa--tgacaagtgtttat i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332051 52 + 667635 ---actatct--aacaaagtaccctgaacctcagtagctaaaaacaat-attatctca i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3252436 51 + 42029645 ---gctgtgt--aacaaattacgctaacc-tcagtggctaaaaac-acaaacatttac i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202384 52 - 94057673 ---gctgtgt--aacaaattaccccaaatgtcagtggctgaaaac-acagacatttat i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043229 52 - 76506943 ----ctgtgtagagaaaattatcccaaacctcagtggctg-aagt-ttaaacatttat i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 148391 53 - 3408981 ---accgtgt--aacaaattatcacagacctgagaagctgaaaacaacaaacatctca i loxAfr3.scaffold_113 I 1090 C 0 s danRer6.chr4 5712254 51 - 71658100 TTCAACTCAT--TAAAAACTCAACAAAACAACAAC-----AAAACAATTAACATTAGT i danRer6.chr4 C 0 n 0 e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293536 1411 - 134511895 I a score=25271.000000 s hg19.chrUn_gl000223 172541 29 + 180455 c----tgtttctg-ggttttggaatctgccaggt s tarSyr1.scaffold_125068 1841 30 + 6413 c----agtttccatggtttaggaatctgctagtt i tarSyr1.scaffold_125068 C 0 C 0 s panTro2.chr12 300160 29 - 135371336 c----tgtttctg-ggttttggaatctgccaggt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 347981 29 - 136387465 c----tgtttttg-ggttttggaatctgccaggt i ponAbe2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 8508 29 - 13947 a----tcacctgc-catttaggaatccaccaggt i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332103 29 + 667635 t----agtttcta-cggtttggggagtgccagac i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3252487 33 + 42029645 cccacagtttctctgggtt-gaagtttgccagct i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202436 34 - 94057673 ctcatagtttctgtggattaggaatctgccaact i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043281 32 - 76506943 ctc--agtttctgtgagttaggaatctgccagtg i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 148444 30 - 3408981 t----catttctgtgtgttaggactccggcagca i loxAfr3.scaffold_113 C 0 C 0 e oryCun2.chrUn0106 736101 2553 + 1032594 I e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293536 1411 - 134511895 I a score=46415.000000 s hg19.chrUn_gl000223 172570 84 + 180455 acttgcccagttggttctggttgagggtctcacatgatgcagtgatgaagg-----tgttgagaagggctgc----------------a-------------gcga--ggaaggagctgg----------------------------------- s tarSyr1.scaffold_125068 1871 86 + 6413 gcttacctggttggagctggttcagggtctcgcatgatgtagtaatcaagggctgctgtcatctcagggtgc----------------t-------------gtgg--ggagacaat-------------------------------------- i tarSyr1.scaffold_125068 C 0 C 0 s panTro2.chr12 300189 84 - 135371336 acttgcccagttggttctggttgagggtctcacatgatgcagtgatgaagg-----tgttgagaagggctgc----------------a-------------gcga--ggaaggagctgg----------------------------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348010 84 - 136387465 gcttgcccagtttgttctggttgagggtctcacatgatgcagtgatgaagg-----tgttgacaagggctgc----------------a-------------gcaa--ggaaggagctgg----------------------------------- i ponAbe2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 8537 89 - 13947 gctcacccagtttatttgggttcagggttccccacaatgcagtgatgaaga-----tgct---aagggccgt----------------ggtcatttcaaggcgtga--tgagggg---------------------------------------- i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332132 69 + 667635 acctgcctcactggctgtggatctgcatctgtgaca---cagtaagcaggt-----tgtcaagaaaggctgc----------------a-------------cctg------------------------------------------------- i cavPor3.scaffold_248 C 0 I 23 s oryCun2.chrUn0106 738654 84 + 1032594 ACTATCCCAGTTGGTTCTGGCTCAGGGTCTTGCACA-TGCAGTAATGAAGG-----CACTGAGAATGGCTAC----------------A-------------GTTGTTGCAAGGTGCCA------------------------------------ i oryCun2.chrUn0106 I 2553 C 0 s canFam2.chr26 3252520 96 + 42029645 gcacctacatctggttcctgttcaggatttcacatggccctgtgacaagga-----tggtgggccaggctgtggggcattcagggtgca-------------gtag--ggagatgg--------------------------------------- i canFam2.chr26 C 0 I 2 s equCab2.chr8 64202470 93 - 94057673 gc-ttaccatgtgggtctggttcagggtctttcacgaccccgtaattgaga-----agttgag-aaggctgt-ggccacctccagtgca-------------acag--ggagatgg--------------------------------------- i equCab2.chr8 C 0 I 2 s bosTau4.chr17 30043313 80 - 76506943 gctcacccatttggttctagtggagaatctcacacgaccctgtcttcaaaa-----tgttgagaattgctgt----------------g-------------gtat--gaaggtca--------------------------------------- i bosTau4.chr17 C 0 I 2 s loxAfr3.scaffold_113 148474 134 - 3408981 gattacccaggtgtttcttgttcaggctctcttacgaagctgtaatcaaca-----tgttggacagggctga-gtcctctcgaggcaca-------------atga--ggaggtgatcccctcactcacacaactgtcggcaggcctcaagattc i loxAfr3.scaffold_113 C 0 C 0 e otoGar1.scaffold_110336.1-47524 7734 6245 + 47524 I e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293536 1411 - 134511895 I a score=29578.000000 s hg19.chrUn_gl000223 172654 30 + 180455 ctcctccaggctcactca-gtggctgttg-gg s ponAbe2.chr12 348094 30 - 136387465 ctcctccaggctcactca-gtggctgttg-gg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 300273 30 - 135371336 ctcctccaggctcactca-gtggctgttg-gg i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_125068 1957 30 + 6413 caccttcaagcgcctcat-gtgcctgttg-gt i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 13979 31 + 47524 CCTCCCCAAGctcattctcatggctcttg-ac i otoGar1.scaffold_110336.1-47524 I 6245 C 0 s tupBel1.scaffold_78714.1-13947 8626 23 - 13947 -------aagatcaccac-atgggtgctg-gc i tupBel1.scaffold_78714.1-13947 C 0 C 0 s oryCun2.chrUn0106 738738 4 + 1032594 ---------------------------TG-GG i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3252618 32 + 42029645 ctcctccaggcttggtcatgtgggagttgtgc i canFam2.chr26 I 2 C 0 s equCab2.chr8 64202565 31 - 94057673 cccttccatgctcactcatgtgggtgttg-gc i equCab2.chr8 I 2 C 0 s bosTau4.chr17 30043395 30 - 76506943 cactt-caagcttactcacatgggtgttg-gc i bosTau4.chr17 I 2 C 0 s loxAfr3.scaffold_113 148608 31 - 3408981 cccttccatgcttatgtatgtgggtgtta-gc i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293536 1411 - 134511895 I e cavPor3.scaffold_248 332201 23 + 667635 I a score=106805.000000 s hg19.chrUn_gl000223 172684 90 + 180455 aagcctcagttccacggcacatgagct--tccacatggcggccttacaacacagc------agc----cagactc-ctccagag------agagagag-------tgcccaggata s ponAbe2.chr12 348124 94 - 136387465 aagcctcagttccatggcacatgcgct--tccacgtggtggccttacaacacagc------agccagacagactc-ctccagag------agagagag-------tgcccaggata i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 300303 90 - 135371336 aagcctcagttccacggcacgtgagct--tccacatggcggccttacaacacagc------agc----cagactc-ctccagag------agagagag-------tgcccaggata i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_125068 1987 99 + 6413 aggcctcagttccttgccatatggacttctctatatggtgccctcacaacatggc------agc----cagattctccccagagggagcaagagagaa-------ctcccaaggtg i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14010 94 + 47524 a-gccacagttacttg-cacg-gagcctctccacccagctgcctcat-gtttggt------ggc----cagattc-ccccagagagagaaagaaagag-------tttgtaaaatg i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tupBel1.scaffold_78714.1-13947 8649 98 - 13947 aaacctcaggtccttgtcatttagccctctctgcatgcttgccttgtggcatggc------agc----cagattc-cttcccagagagcaaaagagag-------cttccaaagta i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332224 79 + 667635 aagtctcaattctttgccatgcgggcctttcc----------------acatagctgtcctggt----ggggctg-ttc---ag------agaaacag-------ttcccaagaag i cavPor3.scaffold_248 I 23 C 0 s oryCun2.chrUn0106 738742 75 + 1032594 AAG---------ATGATcacatggatctctccaca-------------acatggc------agc----aggattc-ctc---ag-----aaggagcaagcgaggcctcacgagatg i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3252650 81 + 42029645 a--cctcagttccttgcCA--------------CAGGACTGCTTCACTGCGTGGC------AGC----TGAATTC-CCCCA-AGAGAGCAAGACAGGC-------TTCCCAAGATG i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202596 98 - 94057673 aggcgtcagtgccttgccacatgggtttctccccagggctgcctcccagcacagc------agc----cgggttc-ccccagagagagtgagagagcg-------ttcccaagagg i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043425 98 - 76506943 agacctctggtccttgccacgtaggcttgtacacagagctgcctcaccatgtggc------cct----tggactt-cccgaaagagagcaggagaggg-------ttcccaaggta i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 148639 87 - 3408981 aggcctccattcctggctac-tgtgcctcttcacaggagtgcctaacaacacggt------ggc----tggcttc-ccccagag----------aaca-------tgcccaagaca i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I e rheMac2.chr11 293536 1411 - 134511895 I a score=112998.000000 s hg19.chrUn_gl000223 172774 45 + 180455 gaagttg-cat-ttctttctaacctagtcttggaagtggcatctcat s panTro2.chr12 300393 45 - 135371336 gaagttg-cat-ttctttctaacctagtcttggaagtggcatctcat i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348218 45 - 136387465 gaagttg-cat-ttttttctaacctagtcttggaagtggcatctcat i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 294947 45 - 134511895 gaagctg-cat-ttctttctaacctagtcttagaagtggcatctcat i rheMac2.chr11 I 1411 C 0 s tarSyr1.scaffold_125068 2086 45 + 6413 gaagttg-cat-ccttttataacctaatcttggaaatgacatcccat i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14104 46 + 47524 gaagtca-cacatgctttataacccaatcttggaagtaacatcccat i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tupBel1.scaffold_78714.1-13947 8747 44 - 13947 gaaatag-tg--tcttttataaccatgtcttagaagtgacaGCCCAT i tupBel1.scaffold_78714.1-13947 C 0 I 295 s cavPor3.scaffold_248 332303 45 + 667635 gaaatca-tat-tttcttataacctaatgtgggaggtgctgtcccat i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 738817 44 + 1032594 gaagtca-cgt-tctcttgcaacctcatcttgga-gtgacgtcccct i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3252731 24 + 42029645 GGGG----AGt-aatctca------------------gacatgccat i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202694 44 - 94057673 gaagtcgcagt-cttttta--acctgctcttgtgtgtgacacccctc i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043523 45 - 76506943 gaagtca-tgt-cctcttgtaacctggtcttggaagggagatccctt i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 148726 45 - 3408981 gaaccac-agc-ctttttataacctgatcctggaagtgacagcccat i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=77667.000000 s hg19.chrUn_gl000223 172819 60 + 180455 -catgtttccctgttctgttcaggacaa-tgagtcagtgagtccagcccacggtcaaga--------ggg s otoGar1.scaffold_110336.1-47524 14150 57 + 47524 -cactttatcctattctattcagtgca----agtgagtaagtccagctcatactcagga--------gag i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tarSyr1.scaffold_125068 2131 60 + 6413 -cactttgcactattctattcagggaag-tgagtctataagtacagcccatactcaaga--------gag i tarSyr1.scaffold_125068 C 0 C 0 s rheMac2.chr11 294992 60 - 134511895 -catgttcccctgttctgttcaggagaa-tgagtcagtgagtccagcccacagtcaaga--------gga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 348263 60 - 136387465 -catgttcccctgttctgttcaggacaa-tgagtcagtgagtccagcccacagtcaaga--------ggg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 300438 60 - 135371336 -catgtttccctgttctgttcaggacaa-tgagtcagtgagtccagcccacagtcaaga--------ggg i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 332348 39 + 667635 -cactttgttctgttctgttcactgga--------gttaagtcaggcc---------------------- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 738861 38 + 1032594 -caccaca-cccgttctatgcagtaga--------agtgagtcCAGCA---------------------- i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3252755 59 + 42029645 -cctattgcagttgtc--ttcagcgtcagtgagtcagtaagtccagcacacattctgga--------ggg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202738 60 - 94057673 -acttctgccctcttctgttcaggggaagtgagtcagtaagtccacccca-attcaaga--------ggg i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043568 69 - 76506943 -acttctaccctattccattcagtggaagtgacttgataaatccagcccatattcaggacgtggggcagt i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 148771 61 - 3408981 tacttctgccctattgtagtcattcaaagcaagttagt-agtcctgctgacactcaggt--------ggg i loxAfr3.scaffold_113 C 0 C 0 e tupBel1.scaffold_78714.1-13947 8791 295 - 13947 I e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=77033.000000 s hg19.chrUn_gl000223 172879 55 + 180455 gaggattatgcaaaagcatgaatacc-ggagtcagaggtcactggggccatcttag s panTro2.chr12 300498 55 - 135371336 gaggattatgcaaaagcatgaatacc-agagtcagaggtcactggggctgtcttag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348323 55 - 136387465 gaggattatgcaaaagcatgaatacc-ggagtcagaggtcactggggccgtcttag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295052 55 - 134511895 gaggattacgcaaaagcatgaatacc-agagtcagaggtcactggggccatcttag i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 2191 52 + 6413 ga----tacacaaaagcatgaataccaggagtcagggatcactggggccatcgtag i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14207 42 + 47524 gagg-------------atgaatacc-aggatctgaggttactggggccatcatag i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9086 56 - 13947 gaggattacaccaaagcacgaatgccaagagtcagagatcagggggtccatctaag i tupBel1.scaffold_78714.1-13947 I 295 C 0 s cavPor3.scaffold_248 332387 12 + 667635 --------------------------------------------agcctgcTTGGG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 738899 13 + 1032594 -------------------------------------------GGGGCCGTCTTAG i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3252814 42 + 42029645 gagtatgacacaaa--cacagacaccaggagtcagagatgggc------------g i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202798 55 - 94057673 gaggactacacaaaagcctgaataccaggagttagagatcagc-gggccaacttgg i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043637 54 - 76506943 gagggttaaacaaaagcacat-ttccaggagttggagatcatg-ggtccagctttc i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 148832 54 - 3408981 aaggactgcacaaaagcatgatgata-ggagtcagagatcatt-ggggcatcttac i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=47708.000000 s hg19.chrUn_gl000223 172934 31 + 180455 aggccacctaccacaAATAC--------------------AGAAGAAA------GTA s panTro2.chr12 300553 31 - 135371336 aggccacctaccacaAATAC--------------------AGAAGAAA------GTA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348378 31 - 136387465 aggccacctaccacaAATAC--------------------AGAAGAAA------GTA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295107 31 - 134511895 aggccgcctgccacaAATAC--------------------AGAAGCAA------GTA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 2243 35 + 6413 aggctgcctaccacaAATAA--------------------AAAAGAAAGCC--TGTA i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14249 35 + 47524 aagcttcccaccacaAGGAG--------------------AAAAGAAAGCC--TGTA i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9142 35 - 13947 aggccgtgtcctacaAACAG--------------------AGAAGAAAGCC--GTTA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332399 55 + 667635 AGG--GACGACAAAAGAAGCAAAGGGCACTGGCCACCAATGAATGAGAGCCCTTCTG i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 738912 34 + 1032594 AGGCTGCCTACAACAGAGA---------------------GAAAAAAAGCC--TGTA i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30043691 34 - 76506943 aggccacttGTTGC-TGTAG--------------------AAAAGGAAGCC--TACA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64202853 34 - 94057673 aggctgcccaccac-TACAG--------------------AGAAGAAAGTC--TGTA i equCab2.chr8 C 0 C 0 s canFam2.chr26 3252856 34 + 42029645 aggctgcctcccac-CCTGG--------------------AGGAGAAAGCC--CATA i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 952 31 + 12097 AGACTAACAACCAC--ATAG--------------------AGAAGAAAGCC----TC i sorAra1.scaffold_136400 N 0 C 0 s loxAfr3.scaffold_113 148886 34 - 3408981 aggctacccaccacaAACA---------------------GAAAGAAAGCC--TGTC i loxAfr3.scaffold_113 C 0 C 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=181090.000000 s hg19.chrUn_gl000223 172965 50 + 180455 TTTTACAAGACCAAATGAGAACCACTTCAGG-TTTAACAGGGATTATGCTT s echTel1.scaffold_287190 9661 49 + 41182 TTTCATGTCACTGAATGAAAATCACT-TGAA-TTTAAACAAGAACATGCCC i echTel1.scaffold_287190 N 0 C 0 s loxAfr3.scaffold_113 148920 49 - 3408981 TTCTACAAGATCTAATGATAATCACTATGGA-TCTAACAGGGATTGTG-CT i loxAfr3.scaffold_113 C 0 C 0 s sorAra1.scaffold_136400 983 40 + 12097 TCCTAAA-------ATGAAAATTGC-TCAGA-TATAATAAGGAC--TGCTT i sorAra1.scaffold_136400 C 0 C 0 s canFam2.chr26 3252890 43 + 42029645 TCCTGCC-------ATGAGGACTACCTCAGG-TATAACAATGATTATGCTT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64202887 43 - 94057673 TTCCACA-------GTGAGAACCACCTCAAA-TTTACCAGAGATTGTGTTT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30043725 43 - 76506943 TTCAGCA-------AAGAGAATGACTTCAGA-TTTAACAGGGATTATACTT i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 738946 50 + 1032594 TTGTACAAAGCCCAATGAGAATCAGTTCAGA-TTTAACAGTGGTTTTGCTT i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 332454 50 + 667635 TTCCATAAGACCTCACAAGACTCGCTTCTGA-TTCAGCAGGAATTGTGCTT i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9177 51 - 13947 TTCATTATGACCTAATGAGAACCACTGCAGATTTTTCCAGGTATTATACTT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14284 50 + 47524 TCTTCTGAGACCTAATCAGAATTGCTTCAGA-TTTAACTGAGATTATGCTT i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tarSyr1.scaffold_125068 2278 50 + 6413 TTCTACAAGACCTAATGAGAATCACTTCAGA-TTTAACAGGAATGGTGCTT i tarSyr1.scaffold_125068 C 0 C 0 s rheMac2.chr11 295138 50 - 134511895 TTTTACAAGACCAAGTGAGAACCACTTCAGG-TTTAACAGGGATTGTGCTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 348409 50 - 136387465 TTTTACAAGACCAAATGAGAACCACTTCAGG-TTTAACAGGGATTATGCTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 300584 50 - 135371336 TTTCACAAGACCAAATGAGAACCACTTCAGG-TTTAACAGGGATTATGCTT i panTro2.chr12 C 0 C 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=1073690.000000 s hg19.chrUn_gl000223 173015 141 + 180455 TTCCAGATA------TCA------TTTGAGGATGTGGCTGTGGATTTCACGCTGGAGGAATGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTGGTTTTCTTGG----------------------GTAAGAACATTCTT-- s panTro2.chr12 300634 141 - 135371336 TTCCAGATA------TCA------TTTGAGGATGTGGCTGTGGATTTCACGTTGGAGGAATGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTGGTTTTCTTGG----------------------GTAAGAACATTCTT-- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348459 141 - 136387465 TTCCAGATA------TCA------TTTGAGGATGTGGCTGTGGATTTCACGTTGGAGGAATGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTGGTTTTCTTGG----------------------GTAAGAACATTCTT-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295188 163 - 134511895 TTCCAGATA------TCA------TTTGAGGATGTGGCTGTGGATTTCACGTTGGAGGAATGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTGATTttcttgggtaagaacattcttcttcttgagtaagaacattctt-- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 2328 141 + 6413 TTCCAGATA------TCG------TTTGAAGATGTGGCTGTGGATTTCACGTTGGAGGAATGGCAGCTACTTAATCCTCTTCAAAAGAATTTGTACAGAGATGTGATGTTGGAGAACTATACCAATCTAGTTTTCTTGG----------------------GTAAGGACATTCTT-- i tarSyr1.scaffold_125068 C 0 I 3 s otoGar1.scaffold_110336.1-47524 14334 141 + 47524 TTCCAGATA------TCA------TTTGAGGATGTGGCTGTGGATTTCACATGGGAGGAATGGCAGCTTCTTAATCCTACCCAAAAAAACCTGTATAGAGATGTTATGCTGGAGAACTATAGCCATCTAATTTTCTTGG----------------------GTAAGAACATTCTT-- i otoGar1.scaffold_110336.1-47524 C 0 I 3 s tupBel1.scaffold_78714.1-13947 9228 141 - 13947 TTCCAGGTA------TCA------TTTGAGGATGTGGTTGTGGATTTCTCATTGGAGGAGTGGCAGCTACTTAATCCTATTCAAAAGAACCTATACAGAGATGTGATGTTGGAGAACTATAGCAACCTAATTTTCTTGG----------------------GTAAGAACATTTCT-- i tupBel1.scaffold_78714.1-13947 C 0 I 3 s cavPor3.scaffold_248 332504 132 + 667635 TT-CAGATA------TCG------TTTGAGGACATTGCTGTGGACTTCACATGGGAGGAGTGGCAGCTTCTGAACCCTCCTCAAAAGAACTTGTACAGAGATGTACTTCTGGAGAACTACAGCAGCCTTGTCTTCCTGG----------------------GTGAGA---------- i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 738996 141 + 1032594 TTCCAGATA------TCA------TTTGATGATGTGGCTGTAGATTTCACTTTGGAAGAGTGGCTCCTACTTAATCCTACTCAAAAGAATTTGTACAGAGATGTAATGTTGGAGAACTGTAGCAATCTAGTGTTCTTGG----------------------GTAAGAACATTCTT-- i oryCun2.chrUn0106 C 0 I 3 s bosTau4.chr17 30043768 141 - 76506943 TTTTAGATA------TCG------TTTGAAGATGTGGCTGTGAATTTCACATTGGAGGAGTGGCAGCTGCTTAATCCTACTCAGAAGACCTTGTACAGAGACGTGATGTTGGAGAACTATAGCAATCTAGTTTTATTGG----------------------GTAAGAACATTCTC-- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64202930 141 - 94057673 TTCTAGATA------TCG------TTTGAGGACGTGGCTGTGGACTTCACCTTGGAGGAGTGGCAGCTACTAAACCCTACTCAGAAGAACTTGTACAGAGACGTGATGTTGGAGAACTATAGCAATCTAGCTTTCTTGG----------------------GTAAGCATATtctt-- i equCab2.chr8 C 0 I 196 s canFam2.chr26 3252933 141 + 42029645 TTCTAGATC------TCC------TTTGAGGATGTGGCTGTGGACTTCACTTTGGAGGAGTGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTAGTTTTCTTGG----------------------GTAAGAATATTCTT-- i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 1023 141 + 12097 TTCTAGGTA------ACA------GTTGAGGATGTGGCTGTGGATTTCACATCAGAGGAGTGGCAACTACTTAATCCTAATCAGAAGAACTTATACAGAGATGTGATGTTGGAGAACTATAGCAATCTCATTTTCTTGG----------------------GTAAGAATAttctt-- i sorAra1.scaffold_136400 C 0 I 3084 s loxAfr3.scaffold_113 148969 141 - 3408981 TTGCAGGTA------TCA------TTTGAGGATGTGGCTGTGGATTTCACATTGGAGGAATGGCAGCTGCTTAATCCTTCTCAAAAGAACTTATACAGAGATGTGATGCTGGAGAACTACAGCAATATAGTTTTCTTGG----------------------GTAAGAACACTCAC-- i loxAfr3.scaffold_113 C 0 I 3 s echTel1.scaffold_287190 9710 147 + 41182 TTGCAGGTAGCATTGTTA------TTCAAGGATGTTGCCGTGTACTTCACCTTGGAGGAATGGCAGCTGCTGGACTCTGCTCAGAAGGACCTGTATTGTGATGTGATGTTGGAAAATTATAGCAACCTGGTATCAGTGG----------------------GTAAGGACAGCTTT-- i echTel1.scaffold_287190 C 0 I 3 s xenTro2.scaffold_34 2137377 149 - 4187163 TTTCAGGCA------CCAGTTAAGTTTGAAGAAATAGCAGTGTATTTCTCCGAGGAGGAGTGGGGGTGTCTGGCAGAGTGGCAGAAACTGCTTTACGCCAATGTGATGCTGGACAACTACGAGACCCTGTGCTATCTGG----------------------GTAAGCATGGTTCTTT i xenTro2.scaffold_34 N 0 N 0 e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=-17417.000000 s hg19.chrUn_gl000223 173156 27 + 180455 ATGTAACT----------------TAGTG---------------TATGGC--------CAGTAA-----C-----------T s echTel1.scaffold_287190 9860 62 + 41182 GTAGAACCCTCGATTAACTGCCAGTCTAA---------------TGTATCTTCTTTATCAATGA-----CTATCATTTGTAA i echTel1.scaffold_287190 I 3 C 0 s loxAfr3.scaffold_113 149113 27 - 3408981 ATGTAACT----------------TATTA---------------TGTACC--------CAGTAA-----CT----------- i loxAfr3.scaffold_113 I 3 C 0 s bosTau4.chr17 30043909 29 - 76506943 ATGTAGTA----------------CAGTG---------------CATACC--------CGGTAA-----CT-------G--G i bosTau4.chr17 C 0 C 0 s equCab2.chr8 29918292 56 + 94057673 ACCTCAGATTGGGCT---------CAGTGCCTTGCTGTTTCTTTTTTAGT--------CGCTGAGAGTGTT-------G--G i equCab2.chr8 I 55887 C 0 s canFam2.chr26 3253074 28 + 42029645 ATATAAA-----------------TAGTG---------------TGTATC--------CAATAA-----CT-------G--G i canFam2.chr26 C 0 C 0 s oryCun2.chrUn0106 739140 31 + 1032594 ATGGAATT----------------TAGTA---------------TGAGCC--------CAGTAA-----CT-------GTGC i oryCun2.chrUn0106 I 3 C 0 s cavPor3.scaffold_248 332636 27 + 667635 ----TACT----------------CAGTG---------------TGTATC--------CATTAC-----TT-------GCAG i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9372 30 - 13947 GCATAATG----------------TAGTG---------------TAC-CC--------TAGTAA-----CT-------GTGA i tupBel1.scaffold_78714.1-13947 I 3 C 0 s otoGar1.scaffold_110336.1-47524 14478 20 + 47524 ATGTAATT----------------TAGTG---------------T------------------------CT-------GTAG i otoGar1.scaffold_110336.1-47524 I 3 C 0 s tarSyr1.scaffold_125068 2472 31 + 6413 ATGTAATT----------------TAGTA---------------TATGAC--------CAATAA-----CT-------GTGG i tarSyr1.scaffold_125068 I 3 C 0 s rheMac2.chr11 295351 31 - 134511895 ATGTAACT----------------TACTG---------------TATGGC--------CAGTAA-----CT-------GTTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 348600 31 - 136387465 ATGTAACT----------------TAGTG---------------TATGGC--------CAGTAA-----CT-------GTTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 300775 27 - 135371336 ATGTAACT----------------TAGTG---------------TATGGC--------CAGTAA-----C-----------T i panTro2.chr12 C 0 C 0 e sorAra1.scaffold_136400 1164 3084 + 12097 I e danRer6.chr4 5712305 0 - 71658100 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=141750.000000 s hg19.chrUn_gl000223 173183 65 + 180455 G---------GCCTGTGAGGTGTTTGCTTATTTTGGATGTAAGTTTTACATGTCAAAGATTA-TTTGAC-------TTTTAT s panTro2.chr12 300802 65 - 135371336 G---------GCCTGTGAGGTGTTTGTTTATTTTGGATGTAAGTTTTACATGTCAAAGATTA-TTTGAC-------TTTTAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348631 65 - 136387465 G---------GCCTGTGAGGTGTTTGTTTATTTTGGATGTAAGTTTTACATGTCAAAGATTA-TTTGAC-------TTGTAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295382 65 - 134511895 G---------GCCTGTGAGGTGTTTGTTGATTTTGGACGTAAGTTTTACACGTCAAAGATTA-TTTGAC-------TTTTAT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 2503 62 + 6413 T---------GCCTCTAAGATGTTT----ACTCTGAATATGAGTTTCAGATGTCAGAGATTCTTTTGAT-------TTCTAT i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14498 65 + 47524 G---------GCCTCTGTGGTATTTACTAATTTTGGATGTAAGTTTCAGATGTCAACAATTC-TTTGAC-------TTTTAT i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9402 61 - 13947 G---------GCCTCTGTA--GTTTACTGATTTGGGGTAT--GTTTTAGATGTCAAAGATTC-ATTGAC-------GTTTGT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332663 54 + 667635 G---------GG---------GCTTACTGATTTGGA-TATAAGTTTTAGGTATCAAAGAGGC-TG-GAT-------ATCTAA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 739171 63 + 1032594 A---------GATGCTGACATATTCACTGCTTTGGG--ATATTTTTCTGATATTGCAGGCTC-TATGAT-------TTCTAC i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3253102 65 + 42029645 G---------GCCTCTAAAATGTTTACTAATTTTGGACCTAAGTTTCAGATGTCAAAGATTC-TTTAAT-------TTCTAT i canFam2.chr26 C 0 C 0 s equCab2.chr8 29918348 62 + 94057673 G---------GCTTCTGAAATTTTTAATGATTTTAGACCTGAATTTAGGAGAGCAGAGTTCC-TTGGAC-------TTT--- i equCab2.chr8 C 0 n 0 s bosTau4.chr17 30043938 73 - 76506943 ATATGCACATACCTCTAAGATA-TTACTGACTTTGGATTTAAGTTTCACATGTCAAAGAGTC-TTTGAT-------TTTGAC i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 149140 58 - 3408981 G---------GCCTCTGAAGTG-------ATTTTGGATTTAAGTTTCAGATATCAAAGATTC-TTTAAT-------TTCTGC i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_287190 9922 64 + 41182 G---------TCCTCCGAAGT--------ATTTCGAACTTGCAATTTATAAACGATCAACTC-TGAACTCAGAGGGTCATGC i echTel1.scaffold_287190 C 0 C 0 s danRer6.Zv8_scaffold3053 44697 57 - 173288 G---------ATCTCTGA--------TTTATTTGAGAAATGAGTTATTCTTTCTAAAGATTT-TTTGAC-------ATTTTG i danRer6.Zv8_scaffold3053 n 0 C 0 e sorAra1.scaffold_136400 1164 3084 + 12097 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=104075.000000 s hg19.chrUn_gl000223 173248 55 + 180455 ACTGAAT-------TGAAAGATTT------------------------TCA----TTCAC---TTGC--TTTATTTTGCAGCCTTTAT--------------------AATAAAA s echTel1.scaffold_287190 9986 57 + 41182 TCTCACCTCCTAAGTGAAAG----------------------------TTG----TTCATG--TTGC--TGAAGTGCAAAGCCTC--A--------------------AATACAC i echTel1.scaffold_287190 C 0 C 0 s loxAfr3.scaffold_113 149198 46 - 3408981 ACTCACC-------TGAAAGATTT------------------------TTA----TTCAT---TTGC--TTTATCTAGTAGTATTT----------------------------- i loxAfr3.scaffold_113 C 0 I 978 s bosTau4.chr17 30044011 55 - 76506943 ACCCAAG-------TGAAAAGTTT------------------------TTA----TTTGC---TTTC--TTTGTTTTATAGCCTCTGA--------------------GGTGAAA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64203267 83 - 94057673 actgaag-------caaaatgtgtgcacttaaccgctgcaccaccgggctggccccTCAC---TTGC--TTTATTTTATAGCCCTTGT--------------------AGTAAAA i equCab2.chr8 I 196 C 0 s canFam2.chr26 3253167 55 + 42029645 ACCCAAT-------TGAAAGATTT------------------------TTGG---TTCAC---TTGC--TTTGTTTTACAACCTTTGC--------------------AGT-GAA i canFam2.chr26 C 0 C 0 s oryCun2.chrUn0106 739234 50 + 1032594 ACCATAT-------TGAGAGATTT------------------------TTA----C--------TGC--TTCACTTTGCAGCCTTTGT--------------------AATAAAG i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 332717 53 + 667635 ACCGATT-------TGGAAGATTT------------------------AGT----C--AT---TTGC--TTCATTTTACAGCCTTTGA--------------------AATAAAA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9463 50 - 13947 ACCAAAT-------AATAAGCTTT------------------------TTA----TTCG----------TTTACTTCATAGCCTTTGT--------------------AATAAAA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14563 55 + 47524 GCCAAAT-------TGAAAGATTT------------------------TTA----TTGAC---TTGC--TTTATTTAACATCCTTTGT--------------------AATAAAA i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tarSyr1.scaffold_125068 2565 54 + 6413 ACCAAAT-------TGAAAGA-TC------------------------TCA----TGCAC---TTGC--TTTATTTCACAGCCTTTGT--------------------AATTAAA i tarSyr1.scaffold_125068 C 0 I 254 s rheMac2.chr11 295447 57 - 134511895 ACTAAAT-------TGAAAGATTT------------------------TCA----TTCAC---TTGCTTTTTATTTCACAGCCTTTGT--------------------AATAAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 348696 55 - 136387465 ACTGAAT-------TGAAAGATTT------------------------TCA----TTAAC---TTGC--TTTATTTTGCAGCCTTTGT--------------------AATAAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 300867 55 - 135371336 ACTGAAT-------TGAAAGATTT------------------------TCA----TTCAC---TTGC--TTTATTTTGCAGCCTTTAT--------------------AATAAAA i panTro2.chr12 C 0 C 0 s danRer6.Zv8_scaffold3053 44754 64 - 173288 ---------------------ATT------------------------TCA----TTCCCATTTTGC--CTAGAAAAATATTACTTGCGGGTTGGTCGCTCGCATGAAAATGAAA i danRer6.Zv8_scaffold3053 C 0 C 0 e sorAra1.scaffold_136400 1164 3084 + 12097 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=283787.000000 s hg19.chrUn_gl000223 173303 96 + 180455 -------------------------------CATTCTACA--TATTTAAGA---CTCTTAGCCCAGGCAGTTAGG----TCCAAGTC-----CTCTGT--GTTTCCAA-TCGACAG-GTTTTCAA--ATTCTCAAACCTGATGCAAT s panTro2.chr12 300922 96 - 135371336 -------------------------------CATTCTACA--TATTTAAGA---CTCTTAGCCCAGGCAGTTAGG----TCCAAGTC-----CTCTGT--GTTTCCAA-TCGACAG-GTTTTCAA--ATTCTCAAACCTGATGCAAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348751 96 - 136387465 -------------------------------CATTCTTCA--TATTTAAGA---CTCTTAGCCCAAGCAGTTAGG----CCCAAGTC-----CTCTGT--GTTTCCAA-TCGACAG-GTTTTCAA--ATTCTCAAACCTGATGCAGT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295504 87 - 134511895 -------------------------------CATTCTTCA--TATTTAAGA---CTCTTAGCCCAAGCAGTTAGG----TGCAAGTC-----CTCTGT--GTTTCCAA-TCGACAG-GTTATCAA--ATTCTCAAACC--------- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 2873 98 + 6413 -------------------------------CATTCTTCA--TATTTAAAAGT-TTGTTAGCCCAAGCAGTTGGG----TTCAGGTC-----CTCTGT--GTTTCTAA-CCAACAG-GTCATCAA--ATTACCATACCTGATGCAAT i tarSyr1.scaffold_125068 I 254 C 0 s otoGar1.scaffold_110336.1-47524 14618 98 + 47524 -------------------------------AATTCTTCA--TATTTACAGGT-CTCTCAGCCTAAGCAATTGGT----TCTAAGTC-----CTCTGT--GTTTCTAA-TCAACAG-GTTATCAA--ATTATCAAACCTGCTGGGAT i otoGar1.scaffold_110336.1-47524 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9513 96 - 13947 -------------------------------CACTCTTCA--TGTTTAAGAGC-ATTTTAGCCCAAGCAGTTGGG----TCCAAGTC-----CTC--T--GTTTCCAA-TGAACAG-GTTATCAA--ATTATCAAACTTGATGAGAG i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332770 94 + 667635 --------------------------------ATTTCTCA--CACTTTAGT---CTCTTAGCTCAAGCAACTGGG----TCCAAGTC-----ATTTGT---TTTCCAA-TTACCAG-GTTATCAG--ATCATCAAGTCTGATGCAGT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 739284 95 + 1032594 --------------------------------CCTTCTTA--ATATTTAGA---GTCTCAGCCCAATCAACTGGG----TACTAGTC-----CTCTGT--GTTTCCAA-TTAGCAG-GTTACCAA--ATGATGACACCAGATGTCAT i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3253222 98 + 42029645 -------------------------------TATTCTTCA--TATTTAAGAGT-CCATCATTGCAAGGAATTGGG----TCCAAGTT-----GTCTGT--GTTTCCAC-TGAACAG-GTTATCAC--ATTATCAGACCTGATGCAAT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64203350 98 - 94057673 -------------------------------TAGGCTTCA--TGTTTAACAGT-CTCTTAGCTCAAGCAACTGGG----TCCACGTC-----CTCTGT--GTTTTCAA-TTAACAG-GTTATCAA--ATTATCAAACCTGATGCCGT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30044066 94 - 76506943 -------------------------------TAGTCTTCA--TATTTAAGAGTCCCCTCAGCCCAAGCAATTGGG----AC-----T-----CTCTGT--GTTTCCAA-TTGACAG-GTTATCAA--GTTATCAAACCTGAGATGAT i bosTau4.chr17 C 0 C 0 s echTel1.scaffold_287190 10043 104 + 41182 --------------------------------CTTTCTCAGCTCTTCAAAGGC-CCTGAAGACCAAGGTTTTAGA----CCAAGGTCTCAGACCCAGG--TTTACCCA-TATACTG-GTTATTAT--GTTTTCAGATTAGAATCAAT i echTel1.scaffold_287190 C 0 C 0 s xenTro2.scaffold_1199 51422 91 - 134240 ---------------------------------CCTTTCT--TTAGTAGAG---GAAACAGCCTAATTAAGTAGC----ACCTGGGT-----GTCTGG-----TCCAA-ACAATAG-GTTTTCTA--ATTTGGAAAACAAAGGCACT i xenTro2.scaffold_1199 N 0 C 0 s danRer6.Zv8_scaffold3053 44818 137 - 173288 CAGGGAAGTAACAGCAAGATTTAGGGATGTTTCTTTTGTG--AGTTTAAGT---CATCCAGCCAAGAAATCTAAGGATTTCCCAATC-----CTCTCTTAGTTTACAAGCCGGCAGTGTTGCCAACTATTTTCAATTAAAAGGCGAT i danRer6.Zv8_scaffold3053 C 0 n 0 e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=95609.000000 s hg19.chrUn_gl000223 173399 39 + 180455 GTTCAAACTGGAACAACAAGATCCATGGATAATAGGTCA s panTro2.chr12 301018 39 - 135371336 GTTCAAACTGGAACAACAAGATCCATGGATAATAGGTCA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348847 39 - 136387465 TTTCAAACTGGAACAACAAGATCCATGGATAATAGATCA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295591 37 - 134511895 --TCAAACTAGAACAACAAGATCCATGGATAATAGGTCA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 2971 39 + 6413 TTGCAAACTGGAACAAGAAGAACCATGGATAATAGATCA i tarSyr1.scaffold_125068 C 0 C 0 s otoGar1.scaffold_110336.1-47524 14716 11 + 47524 TTTTAAACTGG---------------------------- i otoGar1.scaffold_110336.1-47524 C 0 N 0 s tupBel1.scaffold_78714.1-13947 9609 39 - 13947 TTTGAAGCTGGAACAAGAGGAGTCATGGATAATAGATGA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 332864 39 + 667635 TTTCAAGCTAGACCAGGGAGAGTCCTGGATAATAGATGA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 739379 39 + 1032594 ATTCAAGCTGAAACATGATGAGCCATGGATCATAGATGA i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3253320 39 + 42029645 TTTCAAGCGGGAGCAAGAAGAGCCGTGGATGGTGCAGAA i canFam2.chr26 C 0 C 0 s equCab2.chr8 64203448 39 - 94057673 TTTCCAGCTGGAGCAAGAAGAGCAGTGGATAACAGATGA i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30044160 39 - 76506943 CTTCAAGCTGGAGCAAGAAAACCCATGGTTATTAGATGA i bosTau4.chr17 C 0 C 0 s echTel1.scaffold_287190 10147 39 + 41182 CTTTCCAATGTATTAAGAAGATTCATAGACTGTAAAGGT i echTel1.scaffold_287190 C 0 C 0 s xenTro2.scaffold_1199 51513 4 - 134240 GCTC----------------------------------- i xenTro2.scaffold_1199 C 0 I 9710 e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e danRer6.Zv8_scaffold3053 44955 0 - 173288 I e gasAcu1.chrUn 58149869 1021 + 62550211 I a score=151012.000000 s hg19.chrUn_gl000223 173438 163 + 180455 AGAAATCCTAAATCAGAACTTTTCAGGTGAGGAATAATCAGGTT--TATGAGAT--------ACAGTGAACATT---TTATCTCAGGTTTTTGATGACAGGTGG-----GCACTTTTAAAGTGTTGT---TTATA----A--AACTGTG--TTTAAAGTTCCTGAATCTTTAGAGTTGA--CTCAAGATTGGTG s xenTro2.scaffold_687 389214 172 + 546012 AGAGCTCTTTACTGAAAAAGTTTAAAGATAGTCAGAATGAAATT--CATGAAGTTAGTTCCCAAGGTAAACAAT---TAAAC-----ATTTTAACAAAAAAAAATCAATGCAATCTTATGCTGCAGT---TTATAC-AGA--AAA--TG--TT--GAGTTCTTTACTCCTTGAGGATAAATGAGAAGGTTGATG i xenTro2.scaffold_687 n 9710 n 9710 s echTel1.scaffold_287190 10186 125 + 41182 CGGAACC----AAGAGAGCAGTCTGAGTGAGTGAAAACCAGGTA--GGTGGGTG--------AGAGTAGAAA--------------------------AGTTTA-----GAACCCCTGATATGCTGT---TTTTT----A--CATTTTTACTTTAAAATACTTGGACCTTTAAAGATGA--------------- i echTel1.scaffold_287190 C 0 I 440 s bosTau4.chr17 30044199 158 - 76506943 AGAAATCCTAAGTCAAAACTTCTCAGGTGAGAAATAATCAGTTT--AGTGGCAG--------ACAGCGAAAGTT---AAATCTCAGGTTTTTGATGATAGATTG-----GTACTTTTGAAATGTTAT---TTGTA----AATAACTCTG--GTTAAAGCTTCTCCATCTTTGGAGTTGA--CTCAGG------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64203487 163 - 94057673 AGAGATCCTAAACCACAGCTGTCCAGGTGAGCAACAGTCAGGTG--TATGGCCC--------ACAGGGGAAGTT---GAACCTCAGGTTTCTAATGATAGGCTG-----GCACTTTTGAAATGTTAT---TTATA----A--AACTGTG--TTTATAGTTCCTAAATCATCAGAGTTGA--CTCAAGATTGGTG i equCab2.chr8 C 0 C 0 s canFam2.chr26 3253359 165 + 42029645 AGAAGTTCTAAGTCAGAGCTTTGCAGGTGAGAGGGAATCAGGTG--TAT-GTGT--------ACAGTGCAAATT---GAATCTCGGGTTTTTGATGATAGGTTGCTTATAATGTTTTGAAAAGTTAT---TCATA----A--AAC--TG--CTGGAAGTTCCTAAGTCTTTAGAGTTGG--CTCAGGGCTAGTG i canFam2.chr26 C 0 C 0 s oryCun2.chrUn0106 739418 158 + 1032594 AGAAATCCTAAGTCAGAACTTTTCAGGTTAGACATCATCAAGTG--TGTGGAAT--------ACAATGAAAGTG---AAATCTTGGTGTTTTGAAGACTGGTTG-----GCATTTTTGAAA---TGT---TTATA----A--AGC--CA--TTTAAAGTTCCTAAATCTTTAGAGTTGA--CTCAAAACTGGTG i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 332903 151 + 667635 TGAAATTCTAAGTCAGAACTTTCCAGGTGACAAATATTCGATTA--TGTTAGAA--------ACAATGGAAGTT-----ATCTCAGGTTTTTGG----TGATAA-----GTACTTTCACAA---TGTTGGTTATAT---A--TTT--TA--CTTAAAGTTCCTAAATAGTTA-----GG--TTCAAGACTGTTA i cavPor3.scaffold_248 C 0 C 0 s tupBel1.scaffold_78714.1-13947 9648 132 - 13947 AGGTTTCCTGGGACAGAACATTTCAGGTGAGGAATGACTGGGTA--TGTGAGAT--------ACTGTGGG-AGT---TAAATTCACATTTC---TGACAGGTAG-----GCACTTTTGGCA---TGT---TTATT----A--AAC--TG--TTCGAACTTCTTAACTCTT------------------------ i tupBel1.scaffold_78714.1-13947 C 0 I 453 s panTro2.chr12 301057 163 - 135371336 AGAAATCCTAAATCAGAACTTTTCAGGTGAGGAATAATCAGGTT--TATGAGAT--------ACAGTGAACATT---TAATCTCAGGTTTTTGATGACAGGTGG-----GCACTTTTAAAGTGTTGT---TTATA----A--AACTGTG--TTTAAAGTTCCTGAATCTTTAGAGTTGA--CTCAAGATTGGTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 348886 160 - 136387465 AGAAATCCTAAAACAAAACTTTTCAGGTGAGGAATAATCAGGTT--TATGAGAT--------ACAGGGAACATT---TAATCTCAGGTTTTTGATGATAGGTGG-----GCACTTTTAAAG---TGT---TTATA----A--AACTGTG--TATAAAGTTCCTGAATCTTTAGAGTTGA--CTCAAGATTGGTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295628 161 - 134511895 AGAAATCCTAAATTAAAACTTTTCAGGTGAGGAATAATCAGGTT--TATGAGAT--------ACAGTGAACATT---TAATCTCTGGTTTTTGATGACAGGTGG-----GCACTTTTAAAATGTTGT---TTATA----A--AAC--TG--TTTAAAGTTCCTGAATCTTTAGAATTCA--CTCAAGATTGGTG i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 3010 121 + 6413 AAAACTCCTATGTCAGAACTTTTCAGGTGAGAAGTAATCATGTT--TACAGGAC--------ATAG-------------------------TGATGACAGGTGA-----ATACCTTTGAAG---TGT---TTATA----A--AATTATG--TTTAAAGTTCCTAAATTCtgggag------------------- i tarSyr1.scaffold_125068 C 0 I 272 s gasAcu1.chrXI 948123 119 - 16706052 ----------------------------------------------TATGAAAT--------ACAG---AAATTGTATTGACTCAAATTACCGCCAAAAG---A-----AGACAATTATAAATATCT---TCATAATAAA--ACCATTA--TTTAAAATTC-AAAATAAGAAAATTTGA--CACAAGGACAAAA i gasAcu1.chrXI n 1021 C 0 s danRer6.chr4 10762309 106 - 71658100 -----------------------------agcagtaatcacagttccatgaa----------actg---atatt---tttattc-------------------a-----aggttattagaattagaa---tcttatacta--gcccttg--cct--aatgc-tgcttaa-------tgt--tgcaaagtcaaaa i danRer6.chr4 n 0 C 0 e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I a score=7048.000000 s hg19.chrUn_gl000223 173601 57 + 180455 ACATGAG-----------TTTTA--------ATGGATGTGCTCC---------ATAACCTGGTCTCCACATCGGGATGT------GTCTTT---------- s bosTau4.chr17 30044357 37 - 76506943 ---------------------------------------ACTCT---------GTGTCCTGATCTCCACATTGGGATGT------GTCCCC---------- i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64203650 64 - 94057673 ACATGAGCTCTCCATGAATTTT------------GCTGTACTCT---------GTATCCTGGTCCCCACGTCAGGGTGA------GTCCCC---------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3253524 61 + 42029645 ACCTGAGTTCTCC-TGGTTTCT------------AATGTGCTCT---------G--TCCTGGTCTCCACATCAGGATGT------GTCCTC---------- i canFam2.chr26 C 0 C 0 s oryCun2.chrUn0106 739576 65 + 1032594 AAATGCATTCGTCATGATTT-----------TTTAATATTCTCT---------ATATCCTGATAAGCATATCAGGATGT------ATCGTC---------- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 333054 61 + 667635 TCTTG-ATTTACTGTGGTTTTTA--------TTTAATCTTCTCT---------ATGACCTAGTTTCCACAACTGTCTTT---------------------- i cavPor3.scaffold_248 C 0 I 524 s tarSyr1.scaffold_125068 3403 66 + 6413 GCATTAGTTCTTCCTGATTTTCA--------GTTAA--TGCTCT---------ATATCCTGGTCTCTATATCAGGATAT------GTCTTC---------- i tarSyr1.scaffold_125068 I 272 C 0 s rheMac2.chr11 295789 68 - 134511895 ACATGAATTCTTCATGATTTTTA--------ACAGATGTGCTCC---------ATAACCTGTTCTCCACATCGGGATGT------GTCTTT---------- i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 349046 68 - 136387465 ACGTGAGTTCTTCATGATTTTTA--------ATGGATGTGCTCC---------ATAATGTGGTCTCCACATCGGGATGT------GTCTTT---------- i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 301220 57 - 135371336 ACATGAG-----------TTTTA--------ATGGATGTGCTCC---------ATAACCTGGTCTCCACATCGGGATGT------GTCTTT---------- i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 10233 56 - 13947 ------------CGTGATTTTTA--------GCTAATATGTTCT---------TTGCTTTGATTTCCACCTCAAGGTGT------GTCTAC---------- i tupBel1.scaffold_78714.1-13947 I 453 C 0 s danRer6.chr4 10762415 88 - 71658100 --tttctatttttattatttttgttt-----gtatgtatagtcatga------acacacttgtttgcagagcaagtagtgtgaccgttttctgccatttat i danRer6.chr4 C 0 C 0 s gasAcu1.chrXI 948242 99 - 16706052 --ACTTGTTTATTAAGAGATTGATATAAAAAATATCAATTTTCATAATGTATTGAATTCATACTCGTACATGAATTATTTGAACGGTCAACCGATGTTTAC i gasAcu1.chrXI C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=20470.000000 s hg19.chrUn_gl000223 173658 88 + 180455 TCT-CCATGGAGTTTATGATGAAATGTATCCCTCTT-----ATTCAGT--GGCATAGATTGGTGGC----CATTTACAAC-----------------CCCACTTTCTTAG----TTAAGGC s panTro2.chr12 301277 88 - 135371336 TCT-CCATGGAGTTTATGATGAAATGTATCCCTCTT-----ATTCAGT--GGCATAGATTGGTGGC----CATTTACAAC-----------------CCCACTTTCTTAG----TTAAGGC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 349114 88 - 136387465 TCT-CCATGGAGTTTATGATGAAATGTATCCCTCTT-----ATTCAGT--GGCACAGATTGGTGGC----CATTTAGAAC-----------------CCCACTTTCTTGG----TTAAGTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295857 88 - 134511895 TCT-CTATGGAGTTTATGATGAAATGTATCCATCTT-----ATTCAGT--GGCACAGATTGATGGC----CATTTAGAAC-----------------CCCACTTTCTTGG----TTAAGGC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 3469 98 + 6413 TTTGCTGTGGAATTTGTAATGAAATATATCCCCCTTTACCCATTTGGT--GGCACACATTGATGGCCAGTCACTTAGGAC-----------------CCTGCATTCTTGG----ATAAGGT i tarSyr1.scaffold_125068 C 0 C 0 s tupBel1.scaffold_78714.1-13947 10289 91 - 13947 TTT-GCATGGTGTCTATGAGGACACATGCCCCTTATTA---CTTCCATAGGACATAGATTGTTAGT----AACTGAGGAT-----------------GCTGCATTCTTGG----ATAGGG- i tupBel1.scaffold_78714.1-13947 C 0 I 277 s oryCun2.chrUn0106 739641 95 + 1032594 TTT-GCATGAAGTTTCTGATAGAATATACTCCTCTT-ACCTGTACAGT--GGCACAAATTGATGGCTAAGCATTTGGGAC-----------------CCTGCTTTACTGA----ATAAGG- i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3253585 95 + 42029645 TTT-GTGCGGAGCTGGTGATGGCACGTTCCCCCTTC--CCTAGACAGC--GGCACGAGCTGGTGGC-CAGCATTTAGGACA-------------AGGATCCTCCTCCCAG----CCCG--- i canFam2.chr26 C 0 I 47 s equCab2.chr8 64203714 95 - 94057673 TGT-GTGTGGAGTTGATGATGAAATAGACCCCCTCTCACCTCCACGGT--GGCACAGGTTGATGGC-AGTCCTTTAGGAC-----------------CTTGCTTTCTTGG----ATCAGG- i equCab2.chr8 C 0 I 65 s bosTau4.chr17 30044394 89 - 76506943 TTT-----GGAGCTGGTAATGAAATGTGCCTC------------TAGT--GGCACA------------GTCATTCAGGACCTTGCATTCTTGATCAGACCCTTCTTTGAGTTTCCCCAGT- i bosTau4.chr17 C 0 I 45 s danRer6.chr4 10762503 69 - 71658100 tat-tcctggtcatttctccaagaggcacttga------------------------attggaagt------tctaaaac-----------------attagcaTATGAG----ATCAGGT i danRer6.chr4 C 0 n 0 s gasAcu1.chrXI 948341 71 - 16706052 TCT-C-----TCATGCTAACGAAAGCTACTCGACCG-----CTTCGCT--AAC----GTTGGAACT------CTCCAACT-----------------TTCCGCTTG----------CAGCC i gasAcu1.chrXI C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 333115 524 + 667635 I a score=-25630.000000 s hg19.chrUn_gl000223 173746 9 + 180455 TC-----------------------------------------------------------------------TCTTTAT s panTro2.chr12 301365 9 - 135371336 TC-----------------------------------------------------------------------TCTTTAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 349202 9 - 136387465 TC-----------------------------------------------------------------------TCTTTAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 295945 9 - 134511895 TC-----------------------------------------------------------------------TCTTTAT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 3567 78 + 6413 GCTGCTTTGGCCTCCTTTCCTTCT--TCTTCTCAGCCCCCAATCTAGTATGTGGAGGTAGACTTTTTTCCTCTTCTTTAA i tarSyr1.scaffold_125068 C 0 C 0 s oryCun2.chrUn0106 739736 29 + 1032594 -------------CATTTCTTCCCAGCCTTTTCAG--------------------------------------TTTTTAT i oryCun2.chrUn0106 C 0 I 34 s canFam2.chr26 3253727 19 + 42029645 -------------------------------------------------------------CTTCCTTCTTCCTCCTGAA i canFam2.chr26 I 47 C 0 s equCab2.chr8 64203874 19 - 94057673 -------------------------------------------------------------CTTCTTTCCTCCTCTTTAA i equCab2.chr8 I 65 C 0 s bosTau4.chr17 30044528 19 - 76506943 -------------------------------------------------------------CTTCTTTTCTCCTCTTTAA i bosTau4.chr17 I 45 C 0 s gasAcu1.chrXI 948412 9 - 16706052 -----------------------------------------------------------------------GCCGTTCAT i gasAcu1.chrXI C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10380 277 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e danRer6.chr4 10762572 0 - 71658100 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 333115 524 + 667635 I a score=49184.000000 s hg19.chrUn_gl000223 173755 76 + 180455 GAATTCATA-ATTTTTTTCTTCTTTTAGATA----ACACTG-----------------------ATTGCCTTTGA-GTTTATTTAAACTTCAAACT--TTTAATTTA s tarSyr1.scaffold_125068 3645 65 + 6413 GAATTCGT--TTCTTTTTCTCATTTTAGATA----ATACTG-----------------------ATTACCTCTGA-GTTTATT-----TTTAAACT-------TTTA i tarSyr1.scaffold_125068 C 0 C 0 s rheMac2.chr11 295954 75 - 134511895 GAATTCATA-GTTTTTTTCTTCTTTTAGATA----ACACTG-----------------------ATTGCCTTTGA-Gtttatttaaactt-aaact--tttaattta i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 349211 70 - 136387465 GAATTCATA-ATTTTTTT-TTCTTTTAGATA----ACACTG-----------------------ATTGCCTTTGA-GTTTATTTAAACTTCAAACT-------TTTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 301374 76 - 135371336 GAATTCATA-ATTTTTTTCTTCTTTTAGATA----ACACTG-----------------------ATTGCCTTTGC-GTTTATTTAAACTTCAAACT--TTTAATTTA i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 10657 81 - 13947 GAATTTATA-ATATTTTTCTAACTTTAGATGATACACACTG-----------------------ATTACTTTTGG-GTTTATTTTAATTT-AAACCATTTTAGTTTA i tupBel1.scaffold_78714.1-13947 I 277 C 0 s oryCun2.chrUn0106 739799 67 + 1032594 GAATTCATATTTTTTTTTATCATTTTAGATA----ACACTG-----------------------ACTACC------TTTCAGTTTATCTTGAAACT-------TTTA i oryCun2.chrUn0106 I 34 C 0 s cavPor3.scaffold_248 333639 58 + 667635 ----------ATTTTTTTCTCATTTTAAATG----ATACTT-----------------------ATTACAAATGAGTTTTATTTCAATCTAAAAC------------ i cavPor3.scaffold_248 I 524 I 185 s canFam2.chr26 3253746 46 + 42029645 GAATTCAT--AACTTTCTCCTGTTACAGGGA-CGCCGACTG-----------------------AGTCCTTC----------------------------------- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64203893 56 - 94057673 GAATTCAT--AAAGTGTTCTTGTTTTGGGTA----CCACTG-----------------------ATTACTTTTGA-GTTTCCTTTA--------------------- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30044547 55 - 76506943 GAATTCAT--AATTTTTTCCTGTTTTAGGTG----ATGCTG------------------------TTACCTTTGA-ATTTCCTTTA--------------------- i bosTau4.chr17 C 0 C 0 s gasAcu1.chrXI 948421 97 - 16706052 --GTTCACA-TACTTCATTTTATTCTGCATA----TGTCTGTTCCTATTTTCTACACAAACATCGTTACCTCAGC-AGACGCACAACGTTGATACCGCAATAATA-- i gasAcu1.chrXI C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e danRer6.chr4 10762572 0 - 71658100 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=200793.000000 s hg19.chrUn_gl000223 173831 93 + 180455 TTATTTTTCTTCTCTTCCTCTAATTTGATATATTTCTATTTTAAAACCACAGAGAG--TAGAAGATGAACCCACTGATACAGA-GTGAAAATCTAg s tarSyr1.scaffold_125068 3710 85 + 6413 TTATTTTTCTTTTCTTTCTCTAATTTGGCTTATT--TGTTTTAAACCCAC--AAAG--TACAAGGTGAATCCATAGATATAGA-ATAAAAAT---- i tarSyr1.scaffold_125068 C 0 C 0 s rheMac2.chr11 296029 93 - 134511895 ttatttttCTTCTCTTCCTGTAATTTGATATATATATATTTTAAAACCACAGAGAG--TAGAAGATGAACCCACTGATACAGA-ATGAAGATCTAg i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 349281 93 - 136387465 TTATTTTTCTTCTCTTCCTCTAATTTGATATATTTCTATTTTAAAACCACAGAGAG--TAGAAGATGAACCCACTGATATAGA-GTGAAAATCTAg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 301450 93 - 135371336 TTATTTTTCTTCTCTTCCTCTAATTTGATATATTTCTATTTTAAAACCACAGAGAG--TAGAAGATGAACCCACTGATACAGA-GTGAAAATCTAg i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 10738 81 - 13947 TTA-----CTTTTCTTCCTCTAAATTGACCAATTTCTGTTTTCAAACCACAGAGAG--T---AGGTGAATTTGTAGATACAGA-GTAAAAAT---- i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 333882 89 + 667635 TTAAGTTACTTTTTTTCCTCTTATTTGACAGATT--TACTTTAAATCCACAGAGAGACTAGAACAAGGCCCCATGAATTTAGA-ATACAAAT---- i cavPor3.scaffold_248 I 185 C 0 s oryCun2.chrUn0106 739866 76 + 1032594 -----TTAGTTTTCTTCCTCTAACTTAGCAGAAT--TGTTTTAAACCTACAGAGAAAGTAGAAGGTGAATCCATGGGTATAGA------------- i oryCun2.chrUn0106 C 0 C 0 s canFam2.chr26 3253792 83 + 42029645 -----TTTTTTTCTTTTCTCTAATTTGCCAGATTTCTGATTTAAACCCATAGAGAG--TAGAAGATGAACCCATGCAGGTAGA-ATAAAAA----- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64203949 89 - 94057673 ATTTATTTTTTTCCTCCCTCTAATTTGTCAGATTTCTGTTTTAAACCTGTAGAGAG--TGGAAGGTGAATCCATGGATAGAGA-ATAAAAAT---- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30044602 89 - 76506943 TTATTTTGCTTTTCTCTCCCTAATTTATCAAATTTCTGTTTCAAACTCACATAGAG--TAGACTGTGAGTCCATGGACAGAGA-ATAGAAGT---- i bosTau4.chr17 C 0 C 0 s gasAcu1.chrXI 948518 89 - 16706052 TTATTTTCTTCTTTTTTTTCATACGTCTCAGATTTTTTTTTTTTA---ACAGATCT--GATGCGGTCAAGTAAAAAACACAAACGTGAACATCT-- i gasAcu1.chrXI C 0 n 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e loxAfr3.scaffold_113 149244 978 - 3408981 I e danRer6.chr4 10762572 0 - 71658100 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=184153.000000 s hg19.chrUn_gl000223 173924 317 + 180455 gctgggcgcagtagctcata-ctgtaatcctcatgctgtggaggttgggg-agagggcagggcacgacagtcacttaaggccaggagtttgagaccaacctgggcaacaaagcaagaccccatatctactactactaataatacctaacaataataataataattcagccaaatatggtggtgtgcacctctagtgccagctacctgggaggctgaggtgggaggattgcttgacccaaggagctggaagctgcagtgtgccatggatgtgcta--------------ggcaacagagtgagaccctgtctctaaaaacaaaaaCACACACAC s panTro2.chr12 301543 316 - 135371336 gctgggcgcagtagctcata-ctgtaatcctcatgctgtggaggttggggaagagggcagggcacgacagtcacttaaggccaggagtttgagaccaacctgcgcaacaaagcaagaccccatatctactactactaataatacctaacaataataataataattcagccaaatatggtggtgtgcacctctagtgccagctacttgggaggctgaggtgggaggattgcttgagccaaggagctggaagctgcagtgtgc--taggtgtgcta--------------ggcaacagagtgagaccctgtctctaaaaacaaaaaCACACACAC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 349374 313 - 136387465 gctgggcgcagtagctcata-ctgtaatcttcatgctttggaggctgggg-agagggcaagacatgacagtcacttaaggccaggagtttgagaccaacctgggcaacaaagcaagaccccatatctactactactactaatacct---aataataataataattcagccaaatatggtggtgtgcacctctagtgccagctacttgggaggcttaggtgggaggattgcttgagccaaggagctggaagctgcagtgagccatgggtgtgcta--------------ggcaacagagtgagaccctgtctctaaaaacaaaaaCACACATA- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 296122 311 - 134511895 gccgggcgcagtagatcatgcctgtaatcctcatgctttggaggttgggg-agagggcaaggcacgatagtcatgtaaggccaggagtttgagaccaacctgggcaacaaagcaagatcccatgtctactactactactactact----aataataataataacttagccaaatatgctggtgtgcacttctagtgccagctacttgggtggctgaagtgggaggattgcttgagcccaggagctggaagctgcagtgagccacggatgtgcta--------------ggcaatagagtgagaccttgtctctaaaaacaaaagcacata--- i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_46666 3863 292 + 14691 accgggcgcagtcgttcacaactataatcccagcactt----------gg-ggaggccaaggtgagaggattgcctgagcccacaggttcaagaccaccctgggctacttggcaagacctcatctccacaac---------------------agatcaaaaaattagtcaggcatgatggcacatacctctagttccagctgcttggaaggctgaggcaaaaggatcacctgaacccagcaggttgaggctatagtg-gccgggagtgtgccactgccctccagcctgatgacagagtgagactccaactcaaaaaaaaaaGGC-------- i tarSyr1.scaffold_46666 n 0 n 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10819 0 - 13947 C e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 739942 0 + 1032594 C e loxAfr3.scaffold_113 149244 978 - 3408981 I e danRer6.chr4 10762572 0 - 71658100 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 333971 0 + 667635 C e bosTau4.chr17 30044691 0 - 76506943 C e equCab2.chr8 64204038 0 - 94057673 C e canFam2.chr26 3253875 0 + 42029645 C a score=87541.000000 s hg19.chrUn_gl000223 174241 57 + 180455 ACAAAACCCTAATACC--TTAAACATAGTAAGGAGATTTTGCTTCTTACCTTCCTCTGT s cavPor3.scaffold_248 333971 46 + 667635 --------CTAATACC--TTAATCATAGTGAGGAGGCTCTGCCTCTA-CTTTTTTCT-- i cavPor3.scaffold_248 C 0 I 2 s tupBel1.scaffold_78714.1-13947 10819 48 - 13947 --------CTAATACC--CTAAACGTAGCAAGGAGATTCTGCTTCTC-CCTCTCTCTGT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s tarSyr1.scaffold_125068 3795 46 + 6413 --------CTAATCCC--ATTAACATAATA---AGATTCTGCCTCTTCCCTTCCTCTGT i tarSyr1.scaffold_125068 C 0 C 0 s canFam2.chr26 3253875 49 + 42029645 -------CCAAATAAC--GTAAGCCTGGTGAGGACACTTTGCCTCGCCCAT-CTTCTGT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64204038 45 - 94057673 --------CGAATACCTTGCAAGTGTGGAG------TTCTGCCTCTTCCCTGGCTCTGT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30044691 32 - 76506943 --------CTAATGCC---------TAAAA----------GCATTCTTCCTGCCTCCTT i bosTau4.chr17 C 0 C 0 s rheMac2.chr11 296433 57 - 134511895 aaaaaaCCCTAATACT--TTAAACATAGTAAGGAGATTTTGCTTCTTACCTTCCTCTGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 349687 57 - 136387465 AAAAAACCCTAATACG--TTAAACATAGTAAGGAGATTTTGCTTCTTACCTTCCTCTGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 301859 57 - 135371336 AAAAAACCCTAATACC--TTAAACATAGTAAGGAGATTTTGCTTCTTACCTTCCTCTGT i panTro2.chr12 C 0 C 0 s oryCun2.chrUn0106 739942 54 + 1032594 ATAAAACCCTAATACC--TTAAACATAGTAAGGAGATTCTATTTCTT-TCCTTCTGT-- i oryCun2.chrUn0106 C 0 C 0 s loxAfr3.scaffold_113 150222 43 - 3408981 --------------CC--TTAAACAGGGGAAGGAGATTCTGCCTCTCCCCTACTGCTAC i loxAfr3.scaffold_113 I 978 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e danRer6.chr4 10762572 0 - 71658100 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=100464.000000 s hg19.chrUn_gl000223 174298 51 + 180455 ACAAACTAAGGATTTTCAAGTCAGTTCCCAGTGCATCTTTCTGGTACATTT s panTro2.chr12 301916 51 - 135371336 ACAAACTAAGGATTTTCAAGTCAGTTCCCAGTGCATCTTTCTGGTACATTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 349744 51 - 136387465 ACAGACTAAGGATTTTCAAATCAATTCCCAGTGCATCTTTCTGGTACATTT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 296490 51 - 134511895 ACAGACTAAGGATTTTCAAGTCAGTTCCCAGTGCATTTTTCTGGTACATTT i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 3841 51 + 6413 GGAGACTAAGAACTTTGAAGTCAGCTTTTAATACATTTTTCTTGTGCATTT i tarSyr1.scaffold_125068 C 0 C 0 s tupBel1.scaffold_78714.1-13947 10867 41 - 13947 GCAGACTAAGAATGTTGAAGTCAGTTTCCAGTATATCTTTC---------- i tupBel1.scaffold_78714.1-13947 C 0 I 1395 s oryCun2.chrUn0106 739996 49 + 1032594 ACAGACTGAAGACTTCAAAGTCAGCTTCTAGAGTGTCCCTAAGGTGCAT-- i oryCun2.chrUn0106 C 0 I 2 s canFam2.chr26 3253924 49 + 42029645 GTAGACTAAGCCCTTTGCAGGCAGCTCCCTGGGTG-CTTTTCACTGCAT-T i canFam2.chr26 C 0 C 0 s equCab2.chr8 64204083 50 - 94057673 GCAGACCAAGGAC-TTGCATTCAGCTTCCAGTGCATCCTTGTGGTGCATCT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30044723 50 - 76506943 GCAGA-TAAGAACTTCAGGGTCAGCATCCAGGGCATCTTTCTGGTGCCTTT i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 150265 39 - 3408981 GCAGACTGGGG------------GCTTCTAGTGCATCTTTCTGGGGCATCT i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e danRer6.chr4 10762572 0 - 71658100 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I a score=288879.000000 s hg19.chrUn_gl000223 174349 148 + 180455 GATGTTTAACTTCTCTAA---AGCTTCTCTCTCATACCATCACATAGTCAGGTGGGTTT-AAGTCTC-CATTACCTGCTGTGTG--ATATTTAATCTCCGTTTTTGTTGAAGAATCTCATGGT-ATGGGAACATCTTATCTCTCCACTTATTTTTC s panTro2.chr12 301967 148 - 135371336 GATGTTTAACTTCTCTAA---AGCTTCTCTCTCATACCATCACATAGTCAGGTGGGTTT-AAGTCCC-CATTACCTGCTGTGTG--ATATTTAATCTCCGTTTTTGTTGAAGAATCTCATGGT-ATGGGAACATCTTATCTCTCCACTTATTTTTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 349795 148 - 136387465 GATGTTTAACTTCTCTAA---AGCTTCTCTCTCATCCCATCACATAGTCCAGTGGGTTT-AAGTCCC-CATTACCTGCTGTGTG--ATATTTAATCTCCGTTTTTGTTGAAGAACCTCATGGT-ATGGGAACATCTTATCTCTCCACTTATTTTTC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 296541 125 - 134511895 GGTGTTTAACTTCTCTAA---AGCTTCTCTCCCATCCCATCACATAGTCAGGTGGGTTT-AAGTACC-CGTTACC-------------------------TTTATGTTGAAGAACCTCGTGGT-ATGGGAACATCTTATCTCTCCATTTATTTTTC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 3892 148 + 6413 GATGTTTAGCTTCTCTAA---AATTCCTCACTCAT-TTATCAAATAGTATGATGGGCTT-AAGTCCCTCATTACTTGCTGTGTT--ATATGTAAACTCCATTTATGTTGCAGAACCTCATGGT-ATGGCAACATCTTACTTATCTAGTTTATTTTC i tarSyr1.scaffold_125068 C 0 C 0 s oryCun2.chrUn0106 740047 153 + 1032594 GATGTTTAGCTTCTCTAAATTAGCTTCTCATTCATTCCATCATATAGTCTGGTGGGTTT-GATTTCCTCTTCACCTGCTATGTG--GTATTTAAACTCTGGTTATGATGAAGAACCTCATGATAATGGCAGCATCTTAACTCTCTGGTTCTTTTTC i oryCun2.chrUn0106 I 2 C 0 s canFam2.chr26 3253973 138 + 42029645 GATGTCCACCTTCTCG-A---GGCTTCTCAC-TAACCCTTCAAAGAGACTACTAATTTT-CAAATCC---CCAAGTGCTGTGTG--ATATTTTAACTACATTTATGTTGGAGGACCTCATGGT-ATGGCAACATCTTATCCATTTGTTTT------ i canFam2.chr26 C 0 I 14 s equCab2.chr8 64204133 149 - 94057673 GGTGTTCAGCTTCTCTCA---GGCTTCTCATGCATCCCCTCAGGTAGTCTGCTGGGTGTACGACTCC-CACCACCTGCTGTGTG--ATATTTTAACTCCATTTATGTTGAAGAACCTCATGGT-ATGGCAATATCTTATCTACCCAGttttatatc i equCab2.chr8 C 0 I 370 s bosTau4.chr17 30044773 140 - 76506943 GATGTTTAGCTTCTA--A---AGCTTCTTGTTTATCCCTTCAAATGGTCTGCGGGGGTT-TAAGACT--------TGCTGTGTGATATATTTTACCTCCATTTGAGTTGAGGACCCTCACAGT-ATGGCAGCATCTTATCTGTGAAGTTTTTTCC- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 150304 149 - 3408981 GATGCTTAGCTTCTCTAA---GTCTTCTCATGCATTCTGTCCAATAGTCTGACAGGCTG-AAGTCCTCCATGACCTGCTATGTG--ATATTTAAACTCGTTTTATGTTAAAGAACCTCATAGT-ATGGCAACATCTTACCTACCTAGTTCTTTTTC i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e danRer6.chr4 10762572 0 - 71658100 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I a score=136541.000000 s hg19.chrUn_gl000223 174497 146 + 180455 TATGCTCAAGAGTCATTATTAACTCCATTTGAGCTAGA-TTTGTGCTCAAG---------------------------------------AGTCATTATTAACTCCATCTGAGCTAGATTCTTCCTCACACGCTCTTCTGAAATTTTTCTCTG-CATCTGTACCTCTGATTATGGTACATTTTCCCC s loxAfr3.scaffold_113 150453 105 - 3408981 TATACCC-----------------------------AA----------------------------------------------------AGTCATGGTTAACTCTGTTTAAGCTAGGTTCTTCCTTAA-TGTCATTCCTACATTTTTCTCTGCCATCTGGGCCTTTGATTATAGTATGCTTTCCCC i loxAfr3.scaffold_113 C 0 C 0 s canFam2.chr26 3254125 105 + 42029645 TGTTGCC----------------------------AGA----------------------------------------------------AGTCAGGGCTAACTCCATTCAAACTAGTTTCTTCCTCCA-AGCCTTTCATACATTTTTCTCTG-CACTTGAGCCTTTGATCCTCAGATCCTTTCCCC i canFam2.chr26 I 14 C 0 s bosTau4.chr17 30044913 97 - 76506943 TGTGCCC----------------------------AGA----------------------------------------------------GGTCACAATTGACTCCAGTTGAAGTAATTCCTTCCT-TG-TGTCTTTC--ACATGTTTCTCTG-CATGTGGGCTTTTGTGC-----ACACTTTTTCA i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 740200 102 + 1032594 TGTGCCC----------------------------AGA----------------------------------------------------AGTCATAGTTAAGTGCATTTGAACCAGTTTCT---TCGC-TGCCTTTCGTACACTTTTCTCTG-TACCTGGGCTTTCAGTTATGTCATGCCTCCCCC i oryCun2.chrUn0106 C 0 C 0 s tarSyr1.scaffold_125068 4040 105 + 6413 TGTGCCC----------------------------AGA----------------------------------------------------ATTCATGGCGAACTCCATGTGAACTAATTACTGTCTCAG-TGTCTTTCATACAATTTTCTCTG-CATCTGGGCCTTTGATTACAATATGCTTTCTCC i tarSyr1.scaffold_125068 C 0 M 1269 s rheMac2.chr11 296666 105 - 134511895 TGTGCAC----------------------------AGA----------------------------------------------------AGTCATTATTAACTCCATTTCGGCTAGATTCTTCCTCAC-TGCTCTTCTGAAATTTTTCTCTG-CATCTGTGCCTTTGATTATGGTACAGTTTCCCC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 349943 184 - 136387465 TATGCTCAAGAGTCATTGTTAACTCCATTTGAGCTAGA-TTCGTGCTCAAGAGTCATTATTAACTCCATTTGAGCTAGATCATGCTCAAGAGTCATTATTAACTCCATTTGAGCTAGATTCTTCCTCAC-TGCTCTTCTGAAATTTTTCTCTG-CATCTGTGCCTCTGATTATGGTACAGTTTCCCC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 302115 147 - 135371336 TATGCTCAAGAGTCATTATTAACTCCATTTGAGCTAGATTTTGTGCTCAAG---------------------------------------AGTCATTATTAACTCCATTTGAGCTAGATTCTTCCTCACACGCTCTTCTGAAATTTTTCTCTG-CATCTGTACCTCTGATTATGGTACATTTTCCCC i panTro2.chr12 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e danRer6.chr4 10762572 0 - 71658100 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=29666.000000 s hg19.chrUn_gl000223 174643 98 + 180455 AGGTAGAC--------TTCACTTTGAGCTCTTTTCTTCAACTTCAGTGAATGT-TCCTTGACTCACAGCTTTCTCTGAAATCTCTATCCACGTAGCATCTATAGTAT s panTro2.chr12 302262 101 - 135371336 AGGTAGAC-----TCTTTCACTTTGAGCTCTTTTCTTCAACTTCAGTGAATGT-TCCTTGATTCACAGCTTTCTCTGAAATCTCTATCCATGTAGCATCTATAGTAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 350127 98 - 136387465 AGGTAGAC--------TTCACTTTGAGCTCTTTTCTTCAACTTCCGTGAATGT-TCCTTGACTCGCAGCTTTCTCTGAAATCTCTACCCACGTAGCATCTATAGTAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 296771 98 - 134511895 AGGTAGAC--------TTCACTTTCAGCTCTTTTCTTCAACTCCAGTGAATGT-TCCTCGACTCACAGCTTTTTCTGAAATCTCTACCCATGTAGCATCTATAATAT i rheMac2.chr11 C 0 C 0 s oryCun2.chrUn0106 740302 106 + 1032594 ACTAAGACCATACCCCTTCAGCTTGAGCTCTTTTC-TCACCTCCAAAAAAAATCTCCCCGACTTCTAACCTTTTCTGAAATTTCTAGCCCCTTAAAATCTATGTCAT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30045010 100 - 76506943 AT-TAGAT-ACCCTCCCCCTCTTTAAGCTCTATTTTTTCACTTCCAC-AGTGT-TTCTTGACTCCCAGCCTTTTCTGAAATCTCTACCTACTGAGCA---GTATTGT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3254230 98 + 42029645 ACGTGGAC-ACTATGTGTCTCTTCAGTTTGAGCCATTTCTCATACCC-AAGGA-GTGTTGATTCCCAG-----TGTGTGATCTCTGCCCACTTAGGAT-TGCATTAT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 150558 15 - 3408981 ------------------------------------------------------------ATTAACA----------------CTATCCTT---------------- i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 1682757 98 - 71658100 --------TAGCATATGTCACGTTGATCACAATTCCCCTTTTTTCGATCAACT-TTATGGGTTTAAAGTTGTTTCTAGAAGTTGTTTCTAACTCTCACAGATAGTAT i danRer6.chr4 n 0 n 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=29731.000000 s hg19.chrUn_gl000223 174741 52 + 180455 AGTAACTCAGG-CCTGAT-GGACATTATCTGAAAT----------TCCTAAAACAACTA-GTCCT s loxAfr3.scaffold_113 150573 14 - 3408981 ------------TCT---------TCATTTGAGTT------------------------------ i loxAfr3.scaffold_113 C 0 C 0 s canFam2.chr26 3254328 65 + 42029645 GGGAACTTTGGCCCTAGTCAGACATTATCTGGGACTTTTCACCAATTTTTAACCAAGTAGGTCTA i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30045110 64 - 76506943 AGGAACTTGGG-TCTGATCACACACTATCTATAATTATCTATAATTTCTTAACTAATTAGGTCTT i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 740408 54 + 1032594 AGGAACCCAGG-GCTTAGCAAAAATTATCTGGAAT----------TATTTAACCAGTTATGTTGT i oryCun2.chrUn0106 C 0 C 0 s rheMac2.chr11 296869 54 - 134511895 AGTAACTCAGG-CCTGATGAGACATTGTCTGAAAT----------TCCTAAAACAACTAGGTCCT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 350225 53 - 136387465 AGTAACTCAGG-CCTGATAAGACATTATCTGAAAT----------TCCTAAAACAACTA-GTCCT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 302363 52 - 135371336 AGTAACTCAGG-CCTGAT-GGACATTATCTGAAAT----------TCCTAAAACAACTA-GTCCT i panTro2.chr12 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e danRer6.chr4 1682855 0 - 71658100 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=63141.000000 s hg19.chrUn_gl000223 174793 82 + 180455 AAGA---TTTTT----TTCCC-----CATAAAGAGAGATTGCCAGTAAC---GTAG---TCTGTGTTCTCTGTGGAATTTGTGGTATGCACTTACTTGAT s panTro2.chr12 302415 82 - 135371336 AAGA---TTTTT----TTCCC-----CATAAAGAGAGATTGCCAGTAAC---GTAG---TCTGTGTTCTCTGTGGAATTTGTGGTATGCACTTCTTTGAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 350278 76 - 136387465 GAGA-----TTT----TTCCC-----CAT----AGAGATTGCCAGTAAT---ATAG---TCTGTGTTCTCTGTGGAATTTGTGGTATGTACTTATTTGAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 296923 82 - 134511895 AAGA---TTTTT----TCCCC-----CATGAAGAGAGATGGCCAGTAGC---GTAG---TCTGTGCTCTCTGTGGAATCTGTGGTATGTACTTATTTGAT i rheMac2.chr11 C 0 C 0 s oryCun2.chrUn0106 740462 88 + 1032594 AAGGGTTTTTTT----TTTTA-----TATAGAGAGATATGGCCATTAAC---TTAATTTTCTCTGTTCTTTATGGAATTTATGGTTTGTTCATATTCAAT i oryCun2.chrUn0106 C 0 I 5 s bosTau4.chr17 30045174 84 - 76506943 GAGG----TTTT----TTCCC-----TACATAGAAAGATGGTAACTAACTTATTAT---TCTCTGTTCTTTATGACATTTATGCTGTGTAATTACTAAAT i bosTau4.chr17 C 0 I 1 s canFam2.chr26 3254393 86 + 42029645 ATGA----TTCC----CCCCCACACACACATAGAAAGACTGCAAGGAAC---ATAT---TCTCTCTCCCCTGTAGAATTTATAGGGTATAATTATTAAAT i canFam2.chr26 C 0 I 1 s loxAfr3.scaffold_113 150587 65 - 3408981 -------TTTTG----TCACT-----CA------------GTGAATATC---TGAC---TCCCAG-TCTTTCTGAAATTTCTGCTCAGCATTTGTATGAT i loxAfr3.scaffold_113 C 0 I 37 s danRer6.chr22 39538248 71 - 41415389 AAGG---TTTTTCTGATTTCT-----CAAATAGATGTGCTGCTGCTAAT---CTAC---TC--------------AATTAGTG-TAAATGCTTACTTGGT i danRer6.chr22 n 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=51216.000000 s hg19.chrUn_gl000223 174875 101 + 180455 TTTTAAAAATTGGTTATTATGGACCCAGATAAGGAAAG--------GTCTTGT------------TTATCAGATGTCCCTTC-AGTAGAAAAGTTTCCATCTAAGCCTCTACCCTGGGAAAT s canFam2.chr26 3254480 85 + 42029645 TTTCATTAAGTGAGTGTTGTGGGGCCAGGTAAGGCAGG--------ACCTTTC------------TTATCAAGTATTACTTT-AAGGCAAAGGTTTTTATCTAAGC---------------- i canFam2.chr26 I 1 I 20 s bosTau4.chr17 30045259 48 - 76506943 TTTCATTAATTGGTTGTTGTGAGGCCAGGTAAAGCAGG--------ATCTGTC------------TTA------------------------------------------------------ i bosTau4.chr17 I 1 C 0 s oryCun2.chrUn0106 740555 95 + 1032594 TTTCTTTAATTTGTT-TTATGGGACCAAGTGAGAAAGG--------ATTTTAT------------TTGTCAAGTATCTCTTCTAGTAGCAAGGTGT--ATCAA----CTTACCTTGGGATGT i oryCun2.chrUn0106 I 5 C 0 s rheMac2.chr11 297005 97 - 134511895 TTTTAAAAATTGGTTATTATGGAGCCAAAT----AAAA--------GTCTTGT------------TTGTCAGATGTTCCTTC-AGTAGAAAAGTTTCCATCTAAGCATCTACTTTGGGAAAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 350354 113 - 136387465 TTTTAAAAATTGGTTATTATGGAGCCAGATAAGGAAAG--------GTCTTGTttatcagatgtcttatcagatgtctCTTC-AGTAGAAAAGTTTCCATCTAAGCATCTACCTTGGGAAAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 302497 101 - 135371336 TTTTAAAAATTGGTTATTATGGACCCAGATAAGGAAAG--------GTCTTGT------------TTATCAGATGTCCCTTC-AGTAGAAAAGTTTCCATCTAAGCGTCTACCCTGGGAAAT i panTro2.chr12 C 0 C 0 s danRer6.chr22 39538319 99 - 41415389 ATTGAAATAATTGTTAATATCGAAGCATTTAAAAAAAGTAATTATAATGGTAT------------TAATCCTGCAAATACTC-AATAAACTGATTTACTGCTGATCCTTAAT---------- i danRer6.chr22 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e loxAfr3.scaffold_113 150652 37 - 3408981 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=705.000000 s hg19.chrUn_gl000223 174976 57 + 180455 ATTTATTTAAAAAAtttttttgagacaaggtctcact-ttgtcacgcaggttggagta s panTro2.chr12 302598 57 - 135371336 ATTTATTTAAAAAAtttttttgagacaaggtctcact-ttgtcacgcaggttggagta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 350467 57 - 136387465 ATTTATTTAAAAAAtttttttgagacaaggtctcact-ttgtcacccaggttggagta i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297102 56 - 134511895 Atttattt-ttaatttttttttagataaggtctccct-ttgtcacccaggctggagta i rheMac2.chr11 C 0 C 0 s oryCun2.chrUn0106 740650 4 + 1032594 AGTT------------------------------------------------------ i oryCun2.chrUn0106 C 0 I 765 s bosTau4.chr17 30045307 26 - 76506943 --TTTTTCAAATAATTTCTTTAGTACAA------------------------------ i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 150689 49 - 3408981 ATTCATTAATAAGAGTCTAA--------GGTTTTTTT-TCCCCACACAGAGAGATGGC i loxAfr3.scaffold_113 I 37 C 0 s danRer6.chr22 39538418 51 - 41415389 GTCTGTTTGACGAGTGTTTAT-------AGTCTCAATATTATCAGAGCTGCTGAAATA i danRer6.chr22 C 0 n 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3254565 20 + 42029645 I a score=14078.000000 s hg19.chrUn_gl000223 175033 31 + 180455 cagtggcgcagtcacagcttactgcagcctt s panTro2.chr12 302655 31 - 135371336 cagtggcgcagtcacagcttactgcagcctt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 350524 31 - 136387465 cagtggtgcagtcacagctcactgcagcctc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297158 31 - 134511895 tagtggcacagtcacagctcactgcagcctt i rheMac2.chr11 C 0 C 0 s loxAfr3.scaffold_113 150738 13 - 3408981 TAGTAACGTATTC------------------ i loxAfr3.scaffold_113 C 0 I 140 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e bosTau4.chr17 30045333 0 - 76506943 C e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3254565 20 + 42029645 I a score=89811.000000 s hg19.chrUn_gl000223 175064 103 + 180455 aacctatctggactcatgagctcctcccactttagcctccccagtagctgagactaccaccacaccaagctaatttttaaaaatttggtttttctggagagac s rheMac2.chr11 297189 103 - 134511895 gacctgtctggactcatgacctccttccacttcagcctccccagtagctgagactaccaccacacccagctaatttttaaaattttggcttttttggagagac i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 350555 103 - 136387465 aacctgtctggactcatgagctcctcccacttcagcctccccagtagctgagactaccaccacactcagctaatttttaaaaatttggcttttttggagagac i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0320106 0 103 - 1292 AACCTATctggactcatgagctcctcccacttcagcctccccagtagctgagactaccaccacacccagctgatttttaaaaatgtggtttttttggagagac i gorGor1.Supercontig_0320106 N 0 C 0 s panTro2.chr12 302686 103 - 135371336 aacctatctggactcatgagctcctcccacttcagcctccccagtagctgagactaccaccacacccagctaatttttaaaaatttggtttttctggagagac i panTro2.chr12 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e loxAfr3.scaffold_113 150751 140 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e bosTau4.chr17 30045333 0 - 76506943 C e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3254565 20 + 42029645 I a score=34936.000000 s hg19.chrUn_gl000223 175167 42 + 180455 aggatctcactatgttgcccaggctggtctcaaactctgggt s panTro2.chr12 302789 42 - 135371336 agggtctcactatgttgcccaggctggtctcaaactctgggt i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0320106 103 42 - 1292 aggatctcactatgttgcccaggctggtctcaaactctgggt i gorGor1.Supercontig_0320106 C 0 N 0 s ponAbe2.chr12 350658 42 - 136387465 aagatctcactgtgttgcccaggctagtctcaaactctgggc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297292 42 - 134511895 aggatctcactatgtttcccaggctggtctcaaactctgggc i rheMac2.chr11 C 0 C 0 s bosTau4.chr17 30045333 16 - 76506943 AGGTTTTCA--------------------------TCTAAGT i bosTau4.chr17 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e loxAfr3.scaffold_113 150751 140 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3254565 20 + 42029645 I a score=44263.000000 s hg19.chrUn_gl000223 175209 105 + 180455 tcaagtgatcctcccgccttggcctccccaagtgctgggattacaggaa-gagccaTAATGCACAGCAGGGAAACTGAGATTACAGGGGTGAGGCATAATGCACAG s bosTau4.chr17 30045349 20 - 76506943 --AAGTGTTTCATCTTATTTGG------------------------------------------------------------------------------------ i bosTau4.chr17 C 0 C 0 s panTro2.chr12 302831 105 - 135371336 tcaagtgatcctcccgccttggcctccccaagtgctgggattacaggaa-gagccaTAATGCACAGCAGGGAAACTGAGATTACAGGCGTGAGCCATAATGCACAG i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0017425 11180 105 - 14747 tcaggtgatccacccgccttggcctcccaaagtgctgggattacaggaa-gagccaTAATGCACAGCAGGGAAACTGCGATTACAGGCGTGAGCCATAAGGCACAG i gorGor1.Supercontig_0017425 N 0 C 0 s ponAbe2.chr12 350700 70 - 136387465 tcaagtgatcctcccaccttggcctgcccaagtcctgggattacaggAA-GAGCCATAATGCACAGCAGGG----------------------------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297334 70 - 134511895 tcaagtgatcct-ttgctttggcctcccaaagtgctgggattacaggagtgagccaTAATGCACAGCAGGG----------------------------------- i rheMac2.chr11 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e loxAfr3.scaffold_113 150751 140 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3254565 20 + 42029645 I a score=217763.000000 s hg19.chrUn_gl000223 175314 124 + 180455 -CAGGGAAATATTTCGGGTTACAGATGTCTGGGCACCATTCCCATTGTTGTTTAGGTCTGAGTGTGTGCAGTTTGGAAA-----AGCTGTAAAGATAGTTGTTATATTCCCCTATTAATTTAGAACCACT s gorGor1.Supercontig_0017425 11285 124 - 14747 -CAGGAAAATATTTCGGGTTACAGATGTCTGGGCACCATTCCCATTGTTGTTTAGGTCTGAGTATGTGCAGTTTGGAAA-----AGCTGTAAAGATAGATGTTATGTTCCCCTATTAATTTAGAACCACT i gorGor1.Supercontig_0017425 C 0 C 0 s panTro2.chr12 302936 124 - 135371336 -CAGGGAAATATTTCGGGTTACAGATGTCTGGGCACCATTCCCATTGTTGTTTAGGTCTGAGTATGTGCAGTTTGGAAA-----AGCTGTAAAGATAGATGTTATGTTCCCCTATTAATTTAGAACCACT i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 150891 124 - 3408981 TCT-GGAAATATGTGAAATTATAGATGTGGAGGCACCATCCATATGGTTCATTAGGTCTGGGTATGTGTAGTTTGGTAA-----ATCTGTGTAGACAGTTTTTATGCCCCCCCATTAATTGAGAACCACT i loxAfr3.scaffold_113 I 140 C 0 s bosTau4.chr17 30045369 119 - 76506943 ----GAAAATACTTCAAATTACAGATGTC--GGCACCATTCACATGGATGATTAGGACTGGGTATGCGTAGTTTGGAAA-----AGCTGTCAAGATAGACTTTATGTTCCTCCATTAATTTAGAACCACT i bosTau4.chr17 C 0 I 2 s canFam2.chr26 3254585 126 + 42029645 ----GGAAATACTTCAAATTATAGATGTCCAGGTTCCATTCCCATGGATGATTAGGTCCGGGTATGTGTAGCTTAGAAAATACTAACTGTGCAGATAGGTTTTGTATTCACTCATTAATGTAGAACAACC i canFam2.chr26 I 20 I 2 s ponAbe2.chr12 350770 119 - 136387465 ------AAATATTTCGGGTTACAGATGTCTGGGCACCATTCCCATTGTTGTTTAGGTCTGAGTATGTGCAGTTTGGAAA-----AGCTGTAAAGATAGATGTTATGTTCCCCTATTAATTTAGAACCACT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297404 119 - 134511895 ------AAATATTTCAGGTTGCAGATGTCTAGGTACCATTCCCATTGTTTTTTAGGTCTGAGTATGTGCAGTTTGGAAA-----AGCTGTAAAGATAGATATTATGTTCCCCTATTAATTTAGACCCACT i rheMac2.chr11 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_125068 4145 1269 + 6413 M e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=26023.000000 s hg19.chrUn_gl000223 175438 30 + 180455 -------TCTCATGTGGAA----TGAGAGGAATT-----GAAATG-A s panTro2.chr12 303060 30 - 135371336 -------TCTCACGTGGAA----TGAGAGGAATT-----GAAATG-A i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0017425 11409 30 - 14747 -------TCTCACGTGGAA----AGAGAGGAATT-----GAAATG-A i gorGor1.Supercontig_0017425 C 0 C 0 s ponAbe2.chr12 350889 30 - 136387465 -------TCTCATGTGGAA----TGAGAGGAATT-----GAAATG-A i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297523 35 - 134511895 -------TCTCATGTGGAA----TGAGAGGAATTGAAAAGAAATG-A i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 5446 31 + 6413 -------TCTTATGTGGCA----CGAGAGGAACT-----TAAAGGAA i tarSyr1.scaffold_125068 M 1269 C 0 s canFam2.chr26 3254713 15 + 42029645 -------TATTATGTGGC------------------------ATA-G i canFam2.chr26 I 2 I 7 s bosTau4.chr17 30045490 30 - 76506943 -------TATTTTGTGAAA----TGAGAGGAGTT-----GAGATA-A i bosTau4.chr17 I 2 I 7 s loxAfr3.scaffold_113 151015 38 - 3408981 GCAGTTGTGTTCAGTGAAAGGACTGAGAGGAAAT-----AAGA---- i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 1164 3084 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=66348.000000 s hg19.chrUn_gl000223 175468 49 + 180455 GTCATGAAATAACTTTA-----TAGG--------ATTTTAATTTAGAAGACAATATAAAACC s panTro2.chr12 303090 30 - 135371336 GTCATGAAATAACTTTA-----TAGG--------ATTTTAATT------------------- i panTro2.chr12 C 0 M 536 s gorGor1.Supercontig_0017425 11439 49 - 14747 GTCATGAAATAACGTTG-----TAGG--------ATTTTAATTTAGAAGACAATATAAAACC i gorGor1.Supercontig_0017425 C 0 C 0 s ponAbe2.chr12 350919 49 - 136387465 GTCATGAAATAACTTTG-----TAGG--------ATTTTAATTTAGAAGACAATATAAAACC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297558 49 - 134511895 GTCATGAAATAACTTTG-----TAGG--------ATTTTAATTTAGGAGACAATATAAAACC i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 5477 53 + 6413 GTCATAAAATAATCTTGAAGCAAAGA--------ATTTTAATTTAAAAGAAAATAC-AGACT i tarSyr1.scaffold_125068 C 0 C 0 s bosTau4.chr17 30045527 53 - 76506943 GTCATGAAATAACATTG-----CAGGACCAGGGAATTATAATTTAGAAGATAATATAA---- i bosTau4.chr17 I 7 C 0 s canFam2.chr26 3254735 49 + 42029645 GTCATGAAAT-------------AGGAACAGAGAAGTTTAACATAGAATAAAATGCAGAACT i canFam2.chr26 I 7 C 0 s sorAra1.scaffold_136400 4248 51 + 12097 GTCATGAAATAGCCTTG-----TAGGACTAGG--ATTTTCCTTTAGAATAAAGTTGAA---- i sorAra1.scaffold_136400 I 3084 C 0 s loxAfr3.scaffold_113 151053 51 - 3408981 GCCATGAAAT-ACCTTA-----TGGGAACCTAGAATTTCATTTCAG-----AATATGAAACC i loxAfr3.scaffold_113 C 0 I 2 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334017 2 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=152130.000000 s hg19.chrUn_gl000223 175517 77 + 180455 ATAAAATATTTAGTGATGCAGTATTTGAACATGAAGCATTTGTGTTAAAGTGCAAAATTAATTGCCAAGATTAATGA s gorGor1.Supercontig_0017425 11488 77 - 14747 ATAAAATATTTAGCGATGCAGTATTTGAACATGAAGCATTTGTGTTAAAGTGCAAAATTAATTCTCAAGATTAATGA i gorGor1.Supercontig_0017425 C 0 C 0 s ponAbe2.chr12 350968 77 - 136387465 ATAAAATATTTAGCAATGCAGTATTTGAACATGAAGCATTTGTGTTAAAGTGCAAAATTAATTCTCAAGATTAATAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297607 73 - 134511895 ATAAAATATTCAGCAATTCAGTATTTGAACATGAAGCATTTGTGTTAAAGTGCAA----AATTCTCAAGATTAATGA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 5530 76 + 6413 ATAAAATGTTTGATAATTCAGTATTTTAACATGGAACATTTGTGTTAAAGTTCAG-ATAAATTTTCAAGACTAAGGA i tarSyr1.scaffold_125068 C 0 C 0 s cavPor3.scaffold_248 334019 76 + 667635 ATAAAATATTCAATAACTCACTATTTGAGCATGAAGCACATAGTTTAACATGCAA-GTTAATAATGAAGATTAATGA i cavPor3.scaffold_248 I 2 C 0 s bosTau4.chr17 30045580 64 - 76506943 -----------AATAATTCAG--TTTGAACATAATACATTTGTGTCAAAATGCAAAGTTAATTATCAGGATTAACTA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3254784 76 + 42029645 AT-ATTTATTCAATAATTCAGTATTTGAGCAAAAAGTATTTATATTAAAATGCAAAGTTATTTATCAAGATTAATGA i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 4299 71 + 12097 ------ATTTCAATAATTTATCCTTTGCACGTGAAGCATCTGTGTTAAAATGAAAAGCTAATTATCAGAGCCAATGA i sorAra1.scaffold_136400 C 0 I 2711 s loxAfr3.scaffold_113 151106 66 - 3408981 ATAAGACACTCAA-----------TTGAACATGAAGTATTTGTGTTAAAATTCAAAGTTGATTAGTAAGACTAATGT i loxAfr3.scaffold_113 I 2 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e panTro2.chr12 303120 536 - 135371336 M e equCab2.chr8 64204282 370 - 94057673 I a score=75207.000000 s hg19.chrUn_gl000223 175594 50 + 180455 TACCAAAAGGAACTATATTAGAAGCTCAATGACAAGTGAATAATatttat s gorGor1.Supercontig_0017425 11565 50 - 14747 TACCAAAAGGAACTATATTAGAAGCTCAATAACAAGTGAATAATATTTAT i gorGor1.Supercontig_0017425 C 0 C 0 s ponAbe2.chr12 351045 50 - 136387465 TACCAAAAGGAACGATATTAGAAGCTCAATGACAAGTGAATAATAGTTAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297680 50 - 134511895 TACTGAAAGGAACTACTTTAGAAGCTCAATGATAAGTGAATAATatttat i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 5606 50 + 6413 TACAGAAAGGAACTTCTTTAGAAGCTGAGTGATAAGTAAACAGTATTTAT i tarSyr1.scaffold_125068 C 0 C 0 s cavPor3.scaffold_248 334095 45 + 667635 TAC-AGAAGGAACTGC-TTAAAAGTTTAGT---ATATGAACAGCATTTAT i cavPor3.scaffold_248 C 0 I 186 s bosTau4.chr17 30045644 46 - 76506943 TATAGAAAGGAATTGCTTTAGAAGTTTAATGATAAGTGAATAGGGT---- i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3254860 50 + 42029645 TACAGAGGGGAACTGCTTTAGAAGTCCAGTTGTGAATGAACAGTGTTTAT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 151172 49 - 3408981 TAAAGAAAGGTACTACTATACAAGTTCACCAATAGGTCAA-AATGCCTAT i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e panTro2.chr12 303120 536 - 135371336 M e equCab2.chr8 64204282 370 - 94057673 I a score=71464.000000 s hg19.chrUn_gl000223 175644 44 + 180455 cctacctatattgagggcttgttatgtgctatgcagtgggg---gta s gorGor1.Supercontig_0017425 11615 44 - 14747 CCTGCCTAtattgagggcttgttatgtgctatgcagtgggg---gta i gorGor1.Supercontig_0017425 C 0 C 0 s ponAbe2.chr12 351095 44 - 136387465 CCTACCTAtattgaaggcttattatgtgctatgcagtgggg---gca i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297730 44 - 134511895 cctacctatattgagggcttgttatgtgctatgcagtgggg---gta i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 5656 44 + 6413 CCTGtatgtattgaggacttgttatgtgctgtgcaggaggg---gca i tarSyr1.scaffold_125068 C 0 C 0 s bosTau4.chr17 30045690 37 - 76506943 ------TGtatagagggcttg-tatgtactatgtagtggga---gta i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3254910 43 + 42029645 CCTacatgtattgagggcttgctctgtgctatgta-tagat---gca i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 151221 46 - 3408981 CCTacatgtat-gaggacttgttatgtgcgatgcagtggggtgtgta i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e panTro2.chr12 303120 536 - 135371336 M e cavPor3.scaffold_248 334140 186 + 667635 I e equCab2.chr8 64204282 370 - 94057673 I a score=296945.000000 s hg19.chrUn_gl000223 175688 160 + 180455 cattagtgaaaaagacaaacctgttccctacactcatacagtttacattctactgggagagacacgagtaagaggattacctatttgataagtactatgaaggaaagaaataaagagggtattTGTTGGTGTGCCA--TCAGAATGACATTTTGG--TGGGCGT s tarSyr1.scaffold_125068 5700 116 + 6413 catcaatgaaaagtacaaacctgttcctt-ccctcctgtggtttacatttcagttggagagacagaagtaa------------------------tatgaag----gaaataaatgggatatttgttagtgagctg--tcaaaatga----------------- i tarSyr1.scaffold_125068 C 0 I 55 s rheMac2.chr11 297774 156 - 134511895 cattagtgaaaaag----acctgttccctaccctcatacagtttacattctactgggagagatatgagtaaaaggattacctatttgataagtactatgaaggaaagaaagaaagagggtaTTTGTTTGTGTGCCA--TCAAAATGACATTTTGG--TGGGCGT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 351139 160 - 136387465 cattagtgaaaaagacaaacctgttccctacgcttatacagtttacattctactgggagagacacgagtaagaggattacctatttgataagtacgatgaaggaaagaaataaagagggtattTGTTGGTGTGCCA--TTAGAATGACATTTTGG--TGGGCGT i ponAbe2.chr12 C 0 C 0 s gorGor1.Supercontig_0017425 11659 160 - 14747 cattagtgagaaagacaaacctgttccctacgctcatacggtttacattctactgggagagacacgagtaagaggattacctatttgataagtactatgaaggaaagaaataaagagggtattTGTTGGTGTGCCA--TCAGAATGACATTTTGG--TGGGTGT i gorGor1.Supercontig_0017425 C 0 C 0 s panTro2.chr12 303656 160 - 135371336 cattagtgaaaaagacaaacctgttccctacactcatacagtttacatcctactgggagagacacgagtaagaggattacctatttgataagtactatgaaggaaagaaataaagagggtaTTTGTTGGTGTGCCA--TCAGAATGACATTTTGG--TGGGTGT i panTro2.chr12 M 536 C 0 s cavPor3.scaffold_248 334326 149 + 667635 ----AGAAAAAAACACAAGCCTGTCCTCTGCCTTCATGAGGTTTATACTATCCTGGGAGAGACAGCAG-GAGATGAATATGTATTGGATAAGCACT------GAAGGGATTAAGTTGGGTATCTGTTAGTGTGGTATGTCAGGATA----TTTGGATTTagcct i cavPor3.scaffold_248 I 186 C 0 s bosTau4.chr17 30045727 138 - 76506943 catcagtgaaaaactcaaacctgttccctaccttca------ttacattccagtgggagagacagaagtaaggtgattacctatctgataagtgctatgaag----agaataaacagggtgttTGTTAGTGTGCCC--TTAAAATGATAT-------------- i bosTau4.chr17 C 0 I 844 s canFam2.chr26 3254953 143 + 42029645 catcagtgacaagtacaaacttattccttgccctca--gggtttacactcttgtgggggacacagaAATAAGATGATTACCTCTTTGATAAGTACTATAAAG----GAAATAAACAGTATA-TTGTTAAGATGCCC--TCGAAATGATTTTT------------ i canFam2.chr26 C 0 I 951 s loxAfr3.scaffold_113 151267 152 - 3408981 cgtt-ttgaaaagcacagacctgttccctgtcctcatggaatttacattctagtaggagagaaa--agtaaaataattacctatttgataagttatatgaag----gaaataagcagggtTTTTGTTAGTAAACCA--TCA-AATGATGTTTAGACTTGAAT-- i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e equCab2.chr8 64204282 370 - 94057673 I a score=145742.000000 s hg19.chrUn_gl000223 175848 145 + 180455 gacatggtggctcatgcctgtaatcccagtgctttggga-ggccaagacaggagtattgcttgag--gctgggagtt--gcaggcccgcctgggcaacat---------------------------agcaagaccccatctctacaagaaggatattaaaaatt----agccaggtatgc s panTro2.chr12 303816 145 - 135371336 gacatggtggctcatgcctgtaatcccagtgctttggga-ggccaagacaggagtattgcttgag--gctgggagtt--gcaggcccacctgggcaacat---------------------------agcaagaccccatctctacaagaaggatattaaaaatt----agccaggtatgc i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0017425 11819 145 - 14747 gacatggtggctcatgcctgtaatcccagtgctttggga-ggccaagacaggagtattgcttgag--gctgggagtt--gcaggcccgcctgggcaacat---------------------------agcaagaccccatctctacaagaaggatattaaaaatt----agccaggtatgc i gorGor1.Supercontig_0017425 C 0 C 0 s ponAbe2.chr12 351299 145 - 136387465 GACATggtggctcatgcctgtaatcccagtgctttggga-ggccaagacaggagtattgcttgag--gccaggagtt--gcaggcccacctgggcaacat---------------------------agcaagaccccatctctacaagaagaatattaaaaatt----agccaggtatga i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 297930 145 - 134511895 GATATggtggcttatgcctgtaatcccagtgctttggga-ggccaagacaggagtattgcttgag--gccaggagtt--gaaggccagcccgggcaacat---------------------------agcaagaccccatctctacaagaagaatatgaaaaatt----agccaggcatgc i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 7981 133 - 16241 ggcacagtgtctcatgcttgtaatcccaacagttttggg-ggcccaggtaagggtattgcctgagctgataggagctcaataagcct------------t---------------------------ggtgagacttcatctctataacaa----ataaaaaatt----agctgggcatag i tarSyr1.scaffold_36630 n 55 C 0 s cavPor3.scaffold_248 334475 166 + 667635 ggcaaggtggtacatgcatataatcctacctctt---ga-ggctgagtcagaaggactgccccaa---------gtt--ataggccgacctaggctacacaatgaggtcaagcccagtttgaactagagccagaccctgtcttaaaaaaaATAATATTTAGATTTTAAGGGCCAAGCATGC i cavPor3.scaffold_248 C 0 I 1436 s loxAfr3.scaffold_113 151419 85 - 3408981 -------------GAGCTAGAAAttccagataaaaggaacagcagatgcagaggt----cctaag--ggtga-------aaaggtctttgtggccaaagt---------------------------a----------------acagaaagga--------------------------- i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3255096 951 + 42029645 I a score=54559.000000 s hg19.chrUn_gl000223 175993 52 + 180455 tggcacacacctacagtctcagctacttgtgtgactgaggcagaaggatcac s panTro2.chr12 303961 52 - 135371336 tggcacacacctacagtctcagctacttgtgtgactgaggcagaaggatcac i panTro2.chr12 C 0 C 0 s gorGor1.Supercontig_0017425 11964 52 - 14747 tggcacacacctacagtctcagctacttgtgtgactgaggcagaaggatcac i gorGor1.Supercontig_0017425 C 0 N 0 s ponAbe2.chr12 351444 52 - 136387465 tggcacacacctacagtctcagctacttgtgtgactgaggtagaaggatcac i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 298075 52 - 134511895 tggcacacaccaacagtctcagctacttgtgtgactgaggcagaaggatcac i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8114 52 - 16241 aagcccatgcgtgtggttccagctgcttgggagactgaggcgggaggatatc i tarSyr1.scaffold_36630 C 0 C 0 s loxAfr3.scaffold_113 151504 25 - 3408981 --------------------atccatt---gtggctgaggagtagaga---- i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3255096 951 + 42029645 I a score=25373.000000 s hg19.chrUn_gl000223 176045 53 + 180455 ttgagcctgggagtttgcagctgcagtga-ggtatgaccctacctcgtcactc---c s panTro2.chr12 304013 53 - 135371336 ttgagcctgggagtttgcagctgcagtga-ggtatgaccctacctcgtcactc---c i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 351496 53 - 136387465 ttgagcctgggagtttgcagctgcagtga-ggtgtgaccctacctcgtcactc---c i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 298127 52 - 134511895 ttcagcctggaagttt-cagctgcagtga-ggtatgaccctacctcttcattc---c i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8166 55 - 16241 tggagtccagcagttcgatgctgggatg--gccatgagcatgctgctgcactctagc i tarSyr1.scaffold_36630 C 0 C 0 s loxAfr3.scaffold_113 151529 50 - 3408981 gtga---tgagagat-gaagctgaagaggttgaaagacaccgcccggttacac---c i loxAfr3.scaffold_113 C 0 I 239 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3255096 951 + 42029645 I a score=24069.000000 s hg19.chrUn_gl000223 176098 57 + 180455 ttgggcgacacagtgatatcctgtctctaaaaaaTCACCAAATACTacttttaagcc s panTro2.chr12 304066 57 - 135371336 ttgggcgacacagtgatagcctgtctctaaaaaaTCACCAAATACTacttttaagcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 351549 57 - 136387465 ttgggcaacacagtgatatcctgtctttaaaaaaTCACCAAATACTacatttacgcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 298179 55 - 134511895 ttgggcaacacagtgatatcctgac--taaaaaaTCGCAAAATACTacttttaagtc i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8221 27 - 16241 ctggacaatgaagtgaga----------AAAAAATTA-------------------- i tarSyr1.scaffold_36630 C 0 I 101 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 151579 239 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3255096 951 + 42029645 I a score=34042.000000 s hg19.chrUn_gl000223 176155 54 + 180455 tgtacataaactactttattattgtttatcatttaatccattaatttggataga s rheMac2.chr11 298234 54 - 134511895 tatatataaactactttattattgtttaccatttaattcattaatttggataga i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 351606 54 - 136387465 tgtacataaactactttattattgtttatcatttaatccatttatttggataga i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 304123 54 - 135371336 tgtacgtaaactactttattattgtttatcatttaatccattaatttggataga i panTro2.chr12 C 0 C 0 s canFam2.chr26 3256047 52 + 42029645 TGCAGTTGAACTACTTGaatattattttatatt--atttattgacttgtatata i canFam2.chr26 I 951 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 8248 101 - 16241 I e loxAfr3.scaffold_113 151579 239 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I a score=164304.000000 s hg19.chrUn_gl000223 176209 281 + 180455 ca--------------------tattt------------------atttatttatttattttgagacggagtctcgctctgttgg-cacgctggagtgcagtggcacgatctcagctcactacaacctccgactcccgggttcaagcgattctcctgcctcagcctcccaagtatctgggattacaggcgcacaccaccacgcccagctatttgttgtatttttagtagaaatggggtttcaccatgttggccaggctggtctcgatcccttga--cctcgtgatctgcctgcctcggcctcccaaagtgctgggattacag s panTro2.chr12 304177 281 - 135371336 ca--------------------tattt------------------atttatttatttattttgagacggagtctcgctctgttgc-cacgctggagtgcagtggcacgatctcagctcactacaacctccgactcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgcacaccaccacgcccagctatttgttgtatttttagtagaaatggggtttcaccatgttggccaggctggtctcgatcccttga--cctcgtgatctgcctgcctcggcctcccaaagtgctgggattacag i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 351660 301 - 136387465 catatttatttatttatttatttattt------------------atttatttatttattttgagacggagtctcgctctgttgc-caagctggagtgcagtggcacaatctcagctcactacaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgcacaccaccatgcccagctaattgttgtatttttagtagaaatggggtttcaccatgttggccaggctggtctcgatcccttga--cctggtgatctgcctgcctcagcctcccaaagtgctaggattacag i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 298288 279 - 134511895 ct----------------------ttt------------------tttttttttttttttttgagacgaagtctcactctgtcgc-caggctggagtgcagtggtacaatctaagctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagccacccgagtagctgggactaccggtgtgctccaccacgcctggctaatttttgtatttttagtagagacgggatttcgccatgttgaccaggctggtctcaatcccttga--cctcgtaatctgcctgcctcagcctcccaaagtgctgggattgcag i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8349 293 - 16241 CA--------------------TATTTTCTGCATTATAATATCTCAtttttttgcttttcttgattc-----ctcactctgtcactcacactgcagtgcagtggtatgttcatagct-accatagccttgagatgctggactctggtgattcctcagcttcagtcttcaaagtagctggaaccacaagtgtgtgtaaccatgtcc-gctaatttt--gatttattgtagaagcaatgtgtcaccaagtcacccaggttgatctgaaaaccctggtttctggagattctctcaccttctcctctgaaagtgttgggattacag i tarSyr1.scaffold_36630 I 101 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 151579 239 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3256099 0 + 42029645 C a score=14692.000000 s hg19.chrUn_gl000223 176490 35 + 180455 acgtgagccaccgcacccggcctggatagacatat s tarSyr1.scaffold_36630 8642 21 - 16241 ttatgaaccacTCTA-------TGGA-------AG i tarSyr1.scaffold_36630 C 0 C 0 s rheMac2.chr11 298567 35 - 134511895 gcgtgagccaccgcgcctggcctggatagacatat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 351961 35 - 136387465 acatgagccaccgcacctggcctggatagacatat i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 304458 35 - 135371336 acgtgagccaccgcacccggcctggatagacatat i panTro2.chr12 C 0 C 0 s loxAfr3.scaffold_113 151818 33 - 3408981 AAATGAACTACTCCATTGTACTTTGATATCatt-- i loxAfr3.scaffold_113 I 239 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3256099 0 + 42029645 C a score=78377.000000 s hg19.chrUn_gl000223 176525 102 + 180455 ttttaatctcatc--ttgatttgatttt-----aatttaaaagtattgtttttcttttttcccacatctt--ataaaacaattttctgtgaactcttcaagt--ggatctCAC s panTro2.chr12 304493 102 - 135371336 ttttaatctcatc--ttgatttgatttt-----aatttaaaagtattgtttttcttttttcccacatctt--ataaaacaattttctgtaaactcttcaagt--ggatctCGC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 351996 102 - 136387465 ttttaatctcatc--ttgatttgatttt-----aatttaaaagtattgtttttcttttttcccacacctt--ataaaacaattttctgtaaactcttcaagt--ggatctCAC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 298602 102 - 134511895 ttttaatcccatc--ttgatttgatttt-----aatttaaaattattgttttcctttgttctcacatctt--ataaaacaattttctgtaaactcttcaagt--ggatctcac i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8663 73 - 16241 TTTCAA------------ACATGATCCTCCAGGAATTTAGATCAAttttttttctttttt----------------------------taaattttttgagttggagtctcac i tarSyr1.scaffold_36630 C 0 I 123 s canFam2.chr26 3256099 100 + 42029645 tgttaattttatttattGTTTTGATTCT-----AATTTAAG------GTTTTTATTTCTTTACTCAGCTTTCATGAAACCATTTTTTATAAACGCTTTAGGT--GGATTTCAC i canFam2.chr26 C 0 I 4 s loxAfr3.scaffold_113 151851 94 - 3408981 tattattttgata--aatatattaattt-----tatttaaa---attatttttctttttattCACATTTC--ATAAAACAATTTTT----AACTCTT-AAAC--AGatctcat i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I a score=83831.000000 s hg19.chrUn_gl000223 176627 114 + 180455 -----acttgtctacatatgactcttgcttttgatcttcaaac---ttctttgcatagtct----ttttcatctcaatgaatagtattatcatctttgttt-------at----gcccgaaacactgagtctttctt s panTro2.chr12 304595 114 - 135371336 -----ACTTGTCTACATATGACTCTTGCTTTTGATCTTCAAAC---TTCTTTGCATAGTCT----TTTTCATCTCAATGAATAGTATTATCATCTTTGTTT-------AT----GCCCGAAACACTGAGTCTTTCTT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 352098 114 - 136387465 -----ACTTATCTACATATGactcttgcttttgatcttcaaac---ttctttgcatagtct----ttttcatctcaataaataatattatcatctttgttt-------at----gcccgaaacagtgagtcttcctt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 298704 114 - 134511895 -----atttgtctACATATGACTCTTGCTTTTGATCTTCAAAC---TTCTCTGCATAGTGT----TTTTCATCTCAGTGAATAGTATTATCATATTTATTT-------AT----ACCTGAAACACTGAATGtttctt i rheMac2.chr11 C 0 I 312 s tarSyr1.scaffold_31613 2428 96 + 17151 ----------tc---------ctgttccctttgttgcccagaa---gttttt---tagtttgatgtcttcaactcatt------tatatttacatttattcaatagtaat----aaaaaaattactaagac------ i tarSyr1.scaffold_31613 n 123 C 0 s canFam2.chr26 3256203 105 + 42029645 -----ACATGTCTACGTATGACACTTGCTATTAATCTCCAAAC---TTTTTCTC--AGTCA----TTTCCATCTCAAT----AGTTTTAGTACCTCCACTC-------AC----GCTGGAAACATGAAGTCCTT--- i canFam2.chr26 I 4 C 0 s loxAfr3.scaffold_113 151945 124 - 3408981 gctatacatatctacatattactcttgcttttaatctccaaacctgttatttctatattct----ttatcatctcaatgaatagcattatcatcttcactc-------acttaagtcccaaatgctgagtccttt-- i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I a score=13120.000000 s hg19.chrUn_gl000223 176741 25 + 180455 taa-ttttcCATATCAGCAGTTGTGC------- s panTro2.chr12 304709 25 - 135371336 TAA-TTTTCCATATCAGCAGTTGTGC------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 352212 26 - 136387465 taatttttcCATATCAGCAGTTGTGC------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 299130 25 - 134511895 TAA-TTTTCCATATCAGCAGTGGTGC------- i rheMac2.chr11 I 312 C 0 s tarSyr1.scaffold_31613 2524 18 + 17151 --------caatatcaGTATCAAAGG------- i tarSyr1.scaffold_31613 C 0 n 0 s canFam2.chr26 3256308 23 + 42029645 TTA-TTTTCTAAATCAGCAGCTCT--------- i canFam2.chr26 C 0 I 9 s loxAfr3.scaffold_113 152069 32 - 3408981 tat-tcctctATATTAGCAGTTTTAGTTGGTTC i loxAfr3.scaffold_113 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I a score=28492.000000 s hg19.chrUn_gl000223 176766 36 + 180455 TTCCTCTGAAAttctattttctttttgagatggggt s panTro2.chr12 304734 36 - 135371336 TTCCTCTGAAATTCTAttttctttttgagatggggt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 352238 36 - 136387465 TTCCTCTGAAATTCTAttttctttttgagatggagt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 299155 36 - 134511895 TTCCTCTGAAATTCAAttttatttttgagatggggt i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8859 36 - 16241 ctcggctaattttttaatttattgtagagatgaggt i tarSyr1.scaffold_36630 I 123 C 0 s loxAfr3.scaffold_113 152101 36 - 3408981 TTCCTTTGAAATTCTGATTATGTCTGACGATTAGGT i loxAfr3.scaffold_113 C 0 I 49 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3256331 9 + 42029645 I a score=135821.000000 s hg19.chrUn_gl000223 176802 251 + 180455 ctcactcagtcacgcagg-------ctgacgtgtagtgggctcactctcatctcacacaacc----------------------tcctcccacctcagcctcccaagtagctgggactacaggtgtgcaccaccacacctggc-----taatttttgtatttgggtagagatggggtttcaccatgt------------------------------tggccaggctggtcttgaactcctggggtcaagtgatccacccacctcagccccctgaagtgctgggattccaggcatcagtcaccgcagccagc------------cTG s panTro2.chr12 304770 251 - 135371336 ctcactcagtcacgcagg-------ctgacgtgcagtgggctcactctcatctcacaccacc----------------------tcctcccacctcagcctcccaagtagctgggactacaggtgtgcaccaccacacctggc-----taatttttgtatttgggtagagatggggtttcaccatgt------------------------------tggccaggctggtcttgaactcctgggttcaagtgatccatccacctcagccccctgaagtgctgggattccaggcatcagtcactgcagccagc------------cTG i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 352274 272 - 136387465 cttactcagtcacccagg-------ctgacgtgtagt-ggcttactctcggctcacacaaccttcgcctcccgggttcaagtgatcctcccacctcagcctcccaagtagctgggactacaggtgtgtaccaccacacctggc-----taatttttgtatttgggtagagatggggtttcaccatgt------------------------------tggccaggctggtcttgaactcctgggttcaagtgatccacccacctcagccccctgaagtgctgagattccaggtgtcagtcaccacagccagc------------cTG i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 299191 268 - 134511895 ----ctcagtcacccagg-------ctgacgtgcagt-ggctcactcttggctcacacaacctccgcctcccaggctcaagtgatcctcccatcttagcctcccaagtagctgggattacaggcatgcaccaccacacccggc-----taatttttgtatttgggtagagatggggttccaatatgt------------------------------tggccaggctggtcttgaactcctggggtcaagtgatccacccacctcagcctcctaaagtactgggattccaggcatcagtcaccacagccagc------------cTG i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 8895 285 - 16241 ctcatcaagttgtccaggtgagtctcgaacctgcagg--------------ctcagacaa------------------------tccactcatctcagtcacccaaggcac-gggattattggc-tgagccactgaacccggctTAGATCAGttttctattt--tttgagttggagactcactctgtgtcctaagctggagttcagtgatacactcacagccaccctagcattgacctgcttggctctagtgatacttccgcctcacccttctaagtagccaggactacaggcatgtgctaccttatccggTGGTGTCACCAAATTG i tarSyr1.scaffold_36630 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152137 49 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3256331 9 + 42029645 I a score=29884.000000 s hg19.chrUn_gl000223 177053 56 + 180455 CTTCATCTGaaattctg--atatctgagaattagat---gaggctttttc-----ccccctagaaa s tarSyr1.scaffold_36630 9180 55 - 16241 CTTGGGCTGACTTAGTA--ATGTTTT----TCAGATCACAAAGCATTACA-----TTAAATTGAAG i tarSyr1.scaffold_36630 C 0 C 0 s rheMac2.chr11 299459 55 - 134511895 CTTCATCTGAAATTCTG--ATGTCTGAAAATTAGAT---GAGGCTTTTT------GCCTCAAGAAA i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 352546 56 - 136387465 CTTCATCTGAAATTCTG--ATGTCTGAGAATTAGAT---GAGGCTTTTCC-----CCCCCTAGAAA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305021 56 - 135371336 CTTCATCTGAAATTCTG--ATATCTGAGAATTAGAT---GAGGCTTTTTC-----TTCCCTAGAAA i panTro2.chr12 C 0 C 0 s canFam2.chr26 3256340 63 + 42029645 TTTTTTTTGAAATTCTGATATGTCCAAGAATTAGAT---AAGTCTCTGCCTACAGCCCCCTacaca i canFam2.chr26 I 9 I 33 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152137 49 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I a score=165601.000000 s hg19.chrUn_gl000223 177109 299 + 180455 agagtagtttttggGgttttttttgttt--tgttttgttttgttttgttttgtttttgagcctgtgtctcactctgtctcctaggctggagtgcagtgat--agttatgggtcactgcaacctcaacctctcaggctctagtgatccaccc-cctctgcctcacaagtagctgggacttcacatgtgcaccaccacacatggctaattttagaaaaaaaaaatttga--------agagacagtttctccatatgttgcccaggctagtctcaaactcc-tgggct-----caagcagtcctcccacctcagcctccc s tarSyr1.scaffold_36630 9235 291 - 16241 ATAA-----TTTAAACTTTTATTACATTAACAttttccttttcttttttttttttttgagttggagtctcattctctcacccagactagagtgcagtggc--cgctcctggccaccgcagccttgacctgctgggctctggcgatccttccgcctcagcctttcgagtagcaagaattacaggtgcgtgctaccacccccggctaaatt-------------tttgatttatgatagagatgaggtctc---gcctgccccaggcaggtctcgaaccccacgggctt----caggcaatccactcacctcagcctccc i tarSyr1.scaffold_36630 C 0 C 0 s rheMac2.chr11 299514 297 - 134511895 AGAGTAGTTTTTTGGGGttttt-----------ttgtttttgtttgttgtttgttttgagcctctgtctcactctgtctcctagggtggagtgcagcaatgcagttatggctcactgcaacctcaacctctcaggctatagtgatccaccc-cctctgcctcacaagtaactgggacttaaggtgtgcaccaccacacatggctaattttagaaaaaaaatatttgt--------agagacaggttctctgtatgttacccaggctggtctcaaactcc-tgggttgaagacaagcagtcctcccacctcagcctccc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 352602 287 - 136387465 AGAGTAGTTTTTTGGGTTtttt--------------gttttgttttgttttgtttttgagcctgtgtctcactctgtctcctaggctggagtgcagtgatgcagttatggctcactgcaacctcaacctctcaggctctagtgatccaccc-cctctgcctcacaagtagctgggactt--cgtgtgcaccaccgcacatggctaattttagaaaaaaaaattttga--------agagacagtttctccatatgttgcccaggctagtctcaaactcc-tgggct-----caagcagtcctcccgcctcagcttccc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305077 294 - 135371336 AGAGTAGTTTTGGGGGTTtttt---------gttttcttttgttttgttttgtttttgagcctgtgtctcactctgtctcctaggctggagtgcagtgatgcagttatggctcactgcaacctcaacctctcaggctctagtgatccaccc-cctctgcctcacaagtagctgggacttcacgtgtgcaccaccacacatggctaattttagaaaaaataaatttga--------agggacagtttctccatatgttgcccaggctggtctcaaactcc-tgggct-----caagcagtcctcccacctcagcctccc i panTro2.chr12 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152137 49 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e gasAcu1.chrXI 948607 0 - 16706052 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3256403 33 + 42029645 I a score=22147.000000 s hg19.chrUn_gl000223 177408 43 + 180455 aaagtgc--tgggattgttgttgtgagctgccaccaggcccagcc s panTro2.chr12 305371 43 - 135371336 aaagtgc--tgggattgttgttgtgagctgccaccaggcccagcc i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 352889 43 - 136387465 aaagtgc--tgggattgttggtgtgagctgccaccaggcccagcc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 299811 43 - 134511895 aaagtgc--cgggattgtaggtgtgagctgccaccaggtccagcc i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 9526 41 - 16241 aaaagacatggggattacaggc-tga---gccaccaagcctggct i tarSyr1.scaffold_36630 C 0 I 201 s gasAcu1.chrIII 3446837 39 - 16798506 AAGGAAC--CTTGATTATTGT----AGCACACACAACTATTTGTC i gasAcu1.chrIII n 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152137 49 - 3408981 I e danRer6.chr22 39538469 0 - 41415389 I e xenTro2.scaffold_687 389386 9710 + 546012 I e cavPor3.scaffold_248 334641 1436 + 667635 I e bosTau4.chr17 30045865 844 - 76506943 I e equCab2.chr8 64204282 370 - 94057673 I e canFam2.chr26 3256403 33 + 42029645 I a score=124575.000000 s hg19.chrUn_gl000223 177451 79 + 180455 TCGTTTTAT---ATTTGAGACCACGCCAGATCTTTTCATCTCGCAGAGTACttcctgagaata-ttaccccacaattgctagt s loxAfr3.scaffold_113 152186 78 - 3408981 TTGCCTTGT---ACTTAAGACCTTACCAAATCT-TTCATGTTGCAGAATACttcctgggaata-ttacctcaaaattgctaat i loxAfr3.scaffold_113 I 49 C 0 s tarSyr1.scaffold_38559 6295 72 - 15879 ----TTCACAGAATTTTAAAATATGAC---TTTGCTTCTTTCACAGAATATT---GAAAAAAA-TAGTACTAcagttgacccc i tarSyr1.scaffold_38559 n 201 C 0 s cavPor3.scaffold_248 336077 77 + 667635 -TGCTTTGT---ATTTAAGACCTTGCCAAATCT-TTCACCTTGTGGAGAACCTCCTGGGAATA-TTGCCTCACAGTGGCTAGT i cavPor3.scaffold_248 I 1436 C 0 s equCab2.chr8 64204652 73 - 94057673 -----ttaa---atttgagatcttgccaaatct-ttcatcttgcagagtacttcctgggaata-ttgccccataagagctagt i equCab2.chr8 I 370 C 0 s bosTau4.chr17 30046709 65 - 76506943 TTGCTTTAT---ATTTGAGATCTTGCCGTATTT-TT------------TTCAtcttgggagaa-ttatctcacattc-ttagt i bosTau4.chr17 I 844 C 0 s canFam2.chr26 3256436 78 + 42029645 TTGACTTCT---ATTTGAAGTCTCTCAAAATCT-TTTGTCTTGCAGTGTACCtcctgggaatg-ttacctaacaatagctagt i canFam2.chr26 I 33 C 0 s panTro2.chr12 305414 79 - 135371336 TCGTTTTAT---ATTTGAGACCATGCCAGATCTTTTCATCTCGCAGAGTACttcctgagaata-ttaccccacaattgctagt i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 352932 79 - 136387465 TCGTTTTAT---ATTTGAGACCATGCCAGATCTTTTCATCTCGCAGAGTACttcctgagaata-ttaccccacaactgctagt i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 299854 79 - 134511895 TCGTTTTAT---ATTTGAGACCATGCCAGATCTTTTCATCTTGCAGAGTACttcctgagaata-ttatcccacaattgctagt i rheMac2.chr11 C 0 C 0 s gasAcu1.chrIII 3446876 80 - 16798506 TAATCAAAT---ATTTTATTAAATAACAGTATTTCACATTTTATTGTGTTTTTTTTGTCCTTACTTTCAGCAAACAAGCAAGC i gasAcu1.chrIII C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=58466.000000 s hg19.chrUn_gl000223 177530 113 + 180455 aaataatatcat----caaaaagtcaa----gtaaat---aaacct-------------tt---------------aaaatatgcaat----aaatggtc-------ttgtagaaatcacaaacaattgtacttattggatgaa-aatat---ctgttctactatta s rheMac2.chr11 299933 108 - 134511895 aaagaatatcat----caaaaagtc---------aat---aaactt-------------tt---------------aaaatatgcaat----aaatggtc-------ttgtagaaatcacaaacaattgtacttattggatgaa-aatat---ctgtcctactatta i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 353011 113 - 136387465 aaataatatcat----caaaaagtcaa----gtaaat---aaacct-------------tt---------------aaaatatgcaat----aaatggtc-------ttgtagaaatcacaaacaattgtacttattggatgaa-aatat---ctgttctactatta i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305493 113 - 135371336 aaataatatcat----caaaaagtcaa----gtaaat---aaacct-------------tt---------------aaaatatgcaat----aaatggtc-------ttgtagaaatcacaaacaattgtacttattggatgaa-aatat---ctgttctactatta i panTro2.chr12 C 0 C 0 s canFam2.chr26 3256514 112 + 42029645 aaagaat---at----cataaa---------ataaac---aaacct--------tcacttt---------------aaaatatctaat----aaatggtcat----gttgtggaaatcaca---aattgtacttaccaggtaac-agaaa-gtctatcctaatgtta i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30046774 96 - 76506943 aaagaat---at----cataaa---------gtaaac---aagctt------------------------------aaaagatca-tt----aag----------------ggagatcacagataactgtacttacagggtaaa-aaagaaaactgtcctaatatta i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64204725 120 - 94057673 aaagagtatcat----cataaa---------gtgaac---aacctc-taaaaggtcagtgt---------------aaaatatcc-at----aaatggtcgt----attgtggaaatcacagacaaatatgcttatgggttaaa-aaaaa-----atcctaatgtta i equCab2.chr8 C 0 C 0 s cavPor3.scaffold_248 336154 132 + 667635 AAATAATGTTGT----CAAAAAGTAAAAAATAAAAAC---AAACTT-------------CTTTCAAGATTACTATGAAATTACCTAGT----AAGTGGTCCT----CTTCTGGAAGT---AAATAATTCTACTCACATGGTATATAAGAT---CTATT-TGATATTA i cavPor3.scaffold_248 C 0 C 0 s tarSyr1.scaffold_38559 6367 113 - 15879 gaacactatagt----ttgaa--ctga----gtagat---ccactt-------------at---------------aacaaatttgactcaaaaatacactc----tttgcagaattca-----aagctcacatatttggagga-caaat---gtttcatattaata i tarSyr1.scaffold_38559 C 0 I 897 s loxAfr3.scaffold_113 152264 126 - 3408981 aaaggataccat----cataaa---------gtaaac---aaacctttaaatgatcgctta---------------aaaatattcaat----aagtagtaac----attgtggaaatcacaaacaattgtgcttatagggtgaa-aaaaa-atctgtcctaatattt i loxAfr3.scaffold_113 C 0 C 0 s ornAna1.chr1 19363395 105 + 47594283 AAATTACATCAT-------------------AGAAAG---GAACTT-------------GT---------------TAATGAGTCAGT----CTGCAGTCACTGAAGTGATAGACATCATAA--AAATGGGTAGATTTG--AAA-GAAGG---CTACCCTCATTCCA i ornAna1.chr1 N 0 I 13 s gasAcu1.chrIII 3446956 120 - 16798506 AATTAAGCTCATTTCCCAAAAAGTCAA----ACTGATGTGAAACTG------------------------------AGGTGAGGCTAA----ATATAGTT-------TTTCATTTTTCCACATCAATTTGACTTTTTGGGAAAT-GAGATTAATTGCTTGCTTGTT- i gasAcu1.chrIII C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=11532.000000 s hg19.chrUn_gl000223 177643 34 + 180455 taaaaaa--attattgtggttaggagtaatttccag s rheMac2.chr11 300041 35 - 134511895 tacaaaaa-attattatggttaggagtaatttccaa i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 353124 35 - 136387465 taaaaaaa-attattgtggttaggagtaatttccaa i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305606 33 - 135371336 taaaaaa---ttattgtggttaggagtaatttccag i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 336286 29 + 667635 TACAAAGA-ATT-CTGT-----GGAATAATTTCTAT i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3256626 35 + 42029645 tctaaaga-gttcttgtggtttggaatgattttcat i canFam2.chr26 C 0 C 0 s equCab2.chr8 64204845 35 - 94057673 tgcaaaga-attcttgtagtttggaataatttccac i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30046870 33 - 76506943 tgcaaagt-atacttgtggttttgagtaatttac-- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 152390 26 - 3408981 tgcaaatagatacttgc----------tatttctag i loxAfr3.scaffold_113 C 0 C 0 s ornAna1.chr1 19363513 26 + 47594283 TAAAGAGC-ATTTCCTT---TAGAAATGAA------ i ornAna1.chr1 I 13 C 0 s gasAcu1.chrIII 3447076 19 - 16798506 -----------TGCTGAAAGTAAGGACAAA------ i gasAcu1.chrIII C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_38559 6480 897 - 15879 I e danRer6.chr22 39538469 0 - 41415389 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=-25094.000000 s hg19.chrUn_gl000223 177677 54 + 180455 tgatag-----------cattacatataca--------------taaaatatatactt-----tac---aga---------------tccaattaaag---------------------------gagg s panTro2.chr12 305639 54 - 135371336 tgatag-----------cattacatataca--------------taaaatatgtactt-----tac---aga---------------tccgattaaag---------------------------gagg i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 353159 54 - 136387465 tgacag-----------cattacatataca--------------taaaatatatactt-----tat---aga---------------tccaattaaag---------------------------gagg i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 300076 66 - 134511895 tgatag-----------cattccatataga--------------tataatatatactt-----tat---agattcaattatagg---ttcaattaaag---------------------------gagg i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 9768 45 - 16241 TAATAG-----------TATAACGTAT---------------------CTATTCACCT-----CAT---TGA---------------AGTCTTCAAA-----------------------------AAA i tarSyr1.scaffold_36630 I 201 C 0 s cavPor3.scaffold_248 336315 88 + 667635 TGAAAG-----------CCTTACATTTAGA------------TTTAAGATATATAGATTAAACTAT---AGA---------------TCCAACTAAAatcgcttctcagccttttggctaagatcaagt i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3256661 50 + 42029645 tgacag-----------gattacatgtagg--------------ttcattatataaat-----gat---aga---------------ttcagttaaag------------------------------- i canFam2.chr26 C 0 C 0 s equCab2.chr8 64204880 37 - 94057673 tgatag-----------catca---------------------------tatatagat-----tgt---gaa---------------ttcagttaaaa------------------------------- i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30046903 42 - 76506943 ------------------atcatatacaga--------------ttcagtatatagat-----gat----ga---------------ttcaattaaag------------------------------- i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 152416 79 - 3408981 tgataaaaaaaaaaaattaatatatatacacgcatatatgtgttttcattgtatagat-----tat---tgg---------------ttcaattaaaa---------------------------atgg i loxAfr3.scaffold_113 C 0 C 0 s ornAna1.chr1 19363539 58 + 47594283 TGTCAT-----------CATTACACAAAGG----------------AACTATTAATTT-----GGG---GGA---------AGGTTTTGCATTCAGAT---------------------------GTTA i ornAna1.chr1 C 0 C 0 s gasAcu1.chrIII 3447095 46 - 16798506 ----AG-----------GCCTGGAAATAAA--------------CTTGACACTCGTAC-----AACCCCAGC---------------TTGGGTTG---------------------------------- i gasAcu1.chrIII C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e danRer6.chr22 39538469 0 - 41415389 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=-18070.000000 s hg19.chrUn_gl000223 177731 113 + 180455 atgaatgtg-----aagaag--------------ttgaata-aaagtgttg---at------actgag-----------------ctctggagaactctt----g-gataattccaagaggaagttttactgatg---------atggtgaagtt-attgatatcag-------tgattta s panTro2.chr12 305693 113 - 135371336 atgaatgtg-----aagaag--------------ttgaata-gaagtgttg---at------actgag-----------------ctctggagaactctt----g-gataattccaagaggaagttttactgatg---------atggtgaagtt-attgatatcag-------tgattta i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 353213 113 - 136387465 atgaatgtg-----aagaag--------------ttaaata-aaagtgttg---at------actgag-----------------ctctggagaactctt----g-gataattccaagaggaagttttactgatg---------atggtgaagtt-attgatatcag-------tgattta i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 300142 113 - 134511895 atgaatgtg-----aagaag--------------ttaaata-aaagtgttg---at------actgag-----------------ctctggagaactctt----g-gataattacaaaaggaagttttactgatg---------atggtgaagtt-attgacatcag-------tgattta i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_36630 9813 79 - 16241 CTGAACCTG-----CA-AAG--------------TGAACTT-AAATCATTG------------CTGAA-----------------CTT----GAATAGTT----G---TAATTCTATAAGACAG--TGATTGGTG---------GTAGTGG------------------------------ i tarSyr1.scaffold_36630 C 0 I 166 s cavPor3.scaffold_248 336403 136 + 667635 atagatctA-----ACTAAAACGGGATAATGTCCCTAGAAA-AAAGTATTA---AT------ACTGAG-----------------GCCTGGGTAACTCTT----A-AATAATTCCACAAAGCAGCTATAGTGATGCAGAAGTtaatgatgtcagt-aatgatgtcag-------tGATTCA i cavPor3.scaffold_248 C 0 I 154 s canFam2.chr26 3256711 92 + 42029645 -----tgtc----aaaaaac--------------ctaaata-aaagtgtag---at------gctgag-----------------ctctggagaactctt----g-gataaccccaa-----------------g---------aaatagaagtc-agtgatgtcag-------ttattca i canFam2.chr26 C 0 C 0 s equCab2.chr8 64204917 96 - 94057673 -----tgtc----aaaaaat--------------ctgatta-aaaa-gttg---gt------gctgag-----------------atctggagaactttcccaaa-agtagctctaa----------------tg---------atggggaagct-actgatttcag-------tgattca i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30046945 106 - 76506943 -----tatc-----agaaac--------------cttaata-aaggtgttg---at------gctgag-----------------ctctggagaactctt----a-gataattccaaaa--aagtatttctcatg---------atggtgaaatt-gcagatatcag-------tgatttg i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 152495 107 - 3408981 ttgattgtc-----aaaaaa-----------------acta-agggtcatg---at------gctgag-----------------ctctggagaactctt----g-gataattccaaaa---agtacctctagtg---------atgatgaagta-aatgatatcaa-------tgaatca i loxAfr3.scaffold_113 C 0 C 0 s ornAna1.chr1 19363597 117 + 47594283 GTAAATGTGTCCCCACAAAG-------TATATGGTAAACTA-AAAATGGAAAAAAT------ATTTA-------------------TCCATAAAACCATT--------CTACTTTGAGAAATGTTTTGTGTCAGT---------TTGATGTGCT-------TTTTAG-------TGTTTCA i ornAna1.chr1 C 0 I 8 s gasAcu1.chrIII 3447141 116 - 16798506 --------------------------------------ATG-AACATGATG---GT------GATGGTGGACAAACTCTCAGTAACCATAATCATGTCAT----GCTGCCATGACAGAGAGTTTTACAGCCACGA---------ATGGACAACAACATAAACGTCAGATGCATAGGG---- i gasAcu1.chrIII C 0 C 0 s danRer6.chr22 10009426 112 + 41415389 ----------------------------------attgatgtagaacagtg---gttctcaaagtgggggtcgggacc-------ccttgggggggtcgc----gggacaatgacaaggggtcgcttagtgattt---------ccaaaactcaa-ataaatttgag-------taa---- i danRer6.chr22 I 14780 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e xenTro2.scaffold_687 389386 9710 + 546012 I a score=-46263.000000 s hg19.chrUn_gl000223 177844 59 + 180455 ---agtaatgatcccgaat--------aagaatattttataaatgcaataatagtacaaaaa-----aat---gtttc s ornAna1.chr1 19363722 54 + 47594283 ---ATTCTGGACCTCGAATTTC-----ATTCATATTTCATAAATTAGTTAATAAGCTATGGC---------------- i ornAna1.chr1 I 8 C 0 s loxAfr3.scaffold_113 152602 56 - 3408981 ---ggtgatgatctt--------------gaatgtttttaaaatatacagttaatacagaaa-----aataatgtttc i loxAfr3.scaffold_113 C 0 C 0 s bosTau4.chr17 30047051 62 - 76506943 ---ggtgatgattttgaat--------gaggatgctttttgaatgtactgatagtacagaaa-----actaacatatc i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64205013 62 - 94057673 ---ggcaatgatcttgaat--------gagaatgttttttaaatgtaatgatagTACTGAAA-----ACTAACGTTGC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3256803 62 + 42029645 ---ggtgacaattgtaaat--------gagaatgttctttaaatgtaaTGATCGTTCAGGAA-----CCTAATGTTTC i canFam2.chr26 C 0 C 0 s cavPor3.scaffold_248 336693 61 + 667635 ---AGTTACAATCTTGAAT--------GAGAATGTTTCTTAAATGTAACACTGGTCAAGATA-----CTT-CTGATTC i cavPor3.scaffold_248 I 154 C 0 s panTro2.chr12 305806 58 - 135371336 ---agtaatgatcccaaat--------aagaatattttataaatgcaataatagtacaaaaa-----aa----gTTTC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 353326 59 - 136387465 ---agtaatgatcctgaat--------aagaatattttataaatgcaataatagtacaaaaa-----aat---gtttc i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 300255 45 - 134511895 ---agtaatgatcct--------------gaatattttataaatgcaacaatagtacaaaAA---------------- i rheMac2.chr11 C 0 I 322 s xenTro2.scaffold_1417 516 35 - 72846 -----------------------------------TTTATAGATAAGAGCAAAGTTAAAAAA-----AAGGGTAA--- i xenTro2.scaffold_1417 n 9710 C 0 s micMur1.scaffold_4522 90513 30 - 105545 ----------------------------------------AAAAGAAGAAAAAAAAGAGAAAAGAGtaat-------- i micMur1.scaffold_4522 N 0 N 0 s gasAcu1.chrIII 3447257 60 - 16798506 ACCAATGGATAATGCAAATGTTAAAATGAAGATATGAAACAGAGTCAAAGGGGGAGTCAG------------------ i gasAcu1.chrIII C 0 C 0 s danRer6.chr22 10009538 60 + 41415389 actattagaattaccatattttattcataaactacagaagaTAGTTAATAGTTATGTTAA------------------ i danRer6.chr22 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I a score=-4174.000000 s hg19.chrUn_gl000223 177903 49 + 180455 tTATCTTTCAGGTG-TAA-------AGTTGATATTGTACATTTATTCTGCAT-TATAT s panTro2.chr12 305864 49 - 135371336 TTATCTTTCAGGTG-TAA-------AGTTGATATTGTACATTTATTCTGCAT-TATAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 353385 49 - 136387465 tTATCTTTCAGGTG-TAA-------AGTTGATATTGTACATTTATTCTGCAT-TATAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 300622 37 - 134511895 TTATCTTTCAGGTG-TAA-------AGTTCGTATTGTACATTTAT------------- i rheMac2.chr11 I 322 I 1123 s cavPor3.scaffold_248 336754 49 + 667635 TTATCTTTGAGGTG-TAA-------AGGTAATAACTTACATTTACTCTGCAT-TATAT i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3256865 49 + 42029645 TTGACTTTTGGATA-AAA-------ACTTGATATCCTGTATTTACTATGCAC-TGCAC i canFam2.chr26 C 0 C 0 s equCab2.chr8 64205075 48 - 94057673 TCATCTTTCAGAGG-GCG-------GGTTGATATCCCACGTTGACC-TGCGT-CCTAG i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30047113 49 - 76506943 tCACCTTTCAGACATGAA-------AGTTGATATCCTGTGTTTGCT-GTCAT-TGTAT i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 152658 49 - 3408981 tCatctttcaggtc-taa-------agttggtgtcctacatttactctgcat-catat i loxAfr3.scaffold_113 C 0 C 0 s ornAna1.chr1 19363776 14 + 47594283 -------------------------ATTTCATTCTGGAC------------------- i ornAna1.chr1 C 0 N 0 s xenTro2.scaffold_1417 551 38 - 72846 -----------ATG-TTA-------TTAAAACATTGTAAACAAATGAACAAT-TATAT i xenTro2.scaffold_1417 C 0 C 0 s gasAcu1.chrIII 3447317 47 - 16798506 ---------CGGCT-CAGATGTGATCAAATACTTAATACTAATATGCTGCAG-TACCA i gasAcu1.chrIII C 0 C 0 s danRer6.chr22 10009598 41 + 41415389 ---------AGAAA-CAA-------CAACAACAACATACAAACAAAAATCAGCCATCA i danRer6.chr22 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 10908 1395 - 13947 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I a score=5416.000000 s hg19.chrUn_gl000223 177952 60 + 180455 --CCCTTACTTTTT--CTATTAT------------------------ACCATTCAACAATATATACTAATG--------TTGCATT------TTTATGTTT-T s ponAbe2.chr12 353434 60 - 136387465 --CCCTTACTTTTT--CTATTAT------------------------ACCATTCAACAATATATACTAATG--------TTGCATT------TTTATGTTT-T i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305913 60 - 135371336 --CCCTTACTTTTT--CTATTAT------------------------ACCATTCAACAATATATACTAATG--------TTGCATT------TTTATGTTT-T i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12303 66 - 13947 --CTCTCACCATTT--CTCTTAT------------------------ACTATTCAATTATGTATACTATTC--------TTACTTTTGCTCCTTAATGTAC-T i tupBel1.scaffold_78714.1-13947 I 1395 C 0 s cavPor3.scaffold_248 336803 54 + 667635 --------CTAGTT--ATTTTGT------------------------CACTCTCAAAAAGGGGTACTACTA--------TTACTTT------TCTGTATAT-T i cavPor3.scaffold_248 C 0 C 0 s canFam2.chr26 3256914 55 + 42029645 --TCAGTGATCCTC--CTTTAAT------------------------AGC-----ACAGCATACACCAGTT--------TTGCTCT------TCTGTGTGC-T i canFam2.chr26 C 0 I 3 s equCab2.chr8 64205123 59 - 94057673 --TCAATGCTTctt--cccttat------------------------agtgctcaacagtgtgtgctcatc--------ttttcct------ttcatgtg--t i equCab2.chr8 C 0 I 3 s bosTau4.chr17 30047162 61 - 76506943 --TCAGTGTTTCTT--CCTGTGT------------------------GACATTCAGCACTGTGTATTAATC--------TTGCTGT------TCTCTGCACTT i bosTau4.chr17 C 0 I 3 s loxAfr3.scaffold_113 152707 60 - 3408981 --ccagtatttctc--cttttat------------------------agcattctacagtgtatactaatt--------gtgctct------tttgtttac-t i loxAfr3.scaffold_113 C 0 I 3 s xenTro2.scaffold_1417 589 50 - 72846 ------------TT--TTCTAAT------------------------AATGCTAATCAACATATCATAAAT--------TAACATT------AACATGGTT-T i xenTro2.scaffold_1417 C 0 C 0 s gasAcu1.chrIII 3447364 86 - 16798506 CATTCAGAGTATTTGCTGCTTAAACATTTGTACACTGTTTGTTCTGCAATATAAAATAACTTTTAGTGTCA----------ACGTT------TGTTTAGTT-T i gasAcu1.chrIII C 0 C 0 s danRer6.chr22 10009639 86 + 41415389 GCCtttaatttttt--tgtttaa--attaaattaatGAATG------ACTACAAAAAACATTATACGGTTATTAGACTGTTGCATT------TGTATGTTG-T i danRer6.chr22 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 4370 2711 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I e rheMac2.chr11 300659 1123 - 134511895 I a score=-5592.000000 s hg19.chrUn_gl000223 178012 20 + 180455 TATTATTCACATTCTTAACT s ponAbe2.chr12 353494 20 - 136387465 TATTATTCACGTTCATAAAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305973 20 - 135371336 TAATATTCACATTCTTAACT i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12369 20 - 13947 CATTATTCTAATTCTTTACT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s cavPor3.scaffold_248 336857 20 + 667635 TATTACTCTCATGTTTCACT i cavPor3.scaffold_248 C 0 I 126 s bosTau4.chr17 30047226 20 - 76506943 TACTCAGTACATCTGATACT i bosTau4.chr17 I 3 I 30 s equCab2.chr8 64205185 16 - 94057673 tggtctctgtcttc----ct i equCab2.chr8 I 3 I 17 s canFam2.chr26 3256972 17 + 42029645 TACTCTTAGCATTC---ACT i canFam2.chr26 I 3 I 21 s sorAra1.scaffold_136400 7081 14 + 12097 TAATCTGCATATTA------ i sorAra1.scaffold_136400 I 2711 I 15 s loxAfr3.scaffold_113 152770 20 - 3408981 tattctcagtcttctttact i loxAfr3.scaffold_113 I 3 I 47 s xenTro2.scaffold_1417 639 20 - 72846 TATTAATGACATAAATTAGT i xenTro2.scaffold_1417 C 0 C 0 s gasAcu1.chrIII 3447450 14 - 16798506 TGATTGACAGGTGT------ i gasAcu1.chrIII C 0 C 0 s danRer6.chr22 10009725 20 + 41415389 CAATATGCTCATGTTTATTT i danRer6.chr22 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I e rheMac2.chr11 300659 1123 - 134511895 I a score=-9134.000000 s hg19.chrUn_gl000223 178032 2 + 180455 A------------------------T s ponAbe2.chr12 353514 2 - 136387465 A------------------------T i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305993 2 - 135371336 A------------------------T i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12389 26 - 13947 ATTCATAAAGCTCTTTGCTGGTAGGT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s bosTau4.chr17 30047276 2 - 76506943 A------------------------T i bosTau4.chr17 I 30 I 7 s equCab2.chr8 64205218 2 - 94057673 a------------------------t i equCab2.chr8 I 17 I 7 s canFam2.chr26 3257010 2 + 42029645 C------------------------A i canFam2.chr26 I 21 I 7 s sorAra1.scaffold_136400 7110 2 + 12097 A------------------------T i sorAra1.scaffold_136400 I 15 C 0 s danRer6.chr22 10009745 2 + 41415389 ------------------------AT i danRer6.chr22 C 0 N 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I e loxAfr3.scaffold_113 152790 47 - 3408981 I e gasAcu1.chrIII 3447464 0 - 16798506 C e xenTro2.scaffold_1417 659 0 - 72846 C e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I a score=-14000.000000 s hg19.chrUn_gl000223 178034 17 + 180455 ATT-ACCTC---ACTTCT---CTG s ponAbe2.chr12 353516 17 - 136387465 ATT-ACCTC---ACTTCT---CTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 305995 20 - 135371336 ATT-ACCTC---ACTTCTTCTCTG i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12415 18 - 13947 ACTTGCCTG---TCTTCC---CTA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s bosTau4.chr17 30047285 18 - 76506943 CCT-ACTTG--CCCTTTT---CTG i bosTau4.chr17 I 7 C 0 s equCab2.chr8 64205227 17 - 94057673 cct-ccttg---tcttct---ctg i equCab2.chr8 I 7 C 0 s canFam2.chr26 3257019 20 + 42029645 CTT-ACCTGTTTTCTTCC---CTC i canFam2.chr26 I 7 C 0 s sorAra1.scaffold_136400 7112 13 + 12097 CAT-TCTAG-------tt---att i sorAra1.scaffold_136400 C 0 C 0 s xenTro2.scaffold_1417 659 19 - 72846 -TT-ATTGTTGCGCAAAT---CTG i xenTro2.scaffold_1417 C 0 n 0 s gasAcu1.chrIII 3447464 17 - 16798506 AAT-ATACA---GTATTT---GTG i gasAcu1.chrIII C 0 C 0 s danRer6.chr4 45239055 17 + 71658100 ATT-CTAAT---ACCTTT---CTA i danRer6.chr4 N 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I e loxAfr3.scaffold_113 152790 47 - 3408981 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I a score=16059.000000 s hg19.chrUn_gl000223 178051 61 + 180455 -ATCTTCTGATACT----A--AGTTCTGGACACATAGTAGATAATC-ATAG------ATTATTGTCAAAAAAGTA s ponAbe2.chr12 353533 61 - 136387465 -ATCTTCTGATACT----A--AGTTCTGGACACATAGTAGATAATC-GTAG------ATTATTGTCAAAAAAGTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306015 61 - 135371336 -ATCTTCTGATACT----A--AGTTCTGGACACATAGTAGATAATC-ATAG------ATTATTGTCAAAAAAGTA i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12433 64 - 13947 -ATCTTTTGCTACTAACAA--ATTTCTGCACA-ATGGGAAATAATC-ATAG------ATTCTTGTTGTATAAGTA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s bosTau4.chr17 30047303 61 - 76506943 -ATTTCTG-TTAAT----A--ATGTCTGGGCATATAGAAGATAATCAGTAG------GTTATTGTGGAATGAGCA i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64205244 61 - 94057673 -acctgct-agatc----a--agttctggacacatagtagataatcagtag------atcgttgttgaataagta i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257039 50 + 42029645 -ATCTTCC---------------CTCTGTATATACAGCAGATAATC---AG------ATTGTTGTCGAGTAAGTA i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 7125 53 + 12097 -attacta-acaat----a--aattattaata--------attactaacaa------attattactatataatCA i sorAra1.scaffold_136400 C 0 C 0 s loxAfr3.scaffold_113 152837 63 - 3408981 -atcttctgctgct----aacagttctgaacc-ataatagatcatcagtat------atttttgtacaagaagta i loxAfr3.scaffold_113 I 47 C 0 s gasAcu1.chrIII 3447481 54 - 16798506 AGTCATTT-ACAGT----C--AGTTGTGGACTT-----ATACATCT-GGTG------TTTATTTTCGA--AAATG i gasAcu1.chrIII C 0 n 0 s danRer6.chr4 45239072 58 + 71658100 ATGCTTTT-TAAAT----C--CTTTGTTATTTTA---AAGACGTTT-GTCATAATCTTTTATTTT------AATA i danRer6.chr4 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I a score=36508.000000 s hg19.chrUn_gl000223 178112 44 + 180455 AACTAATCACTTCA---------------GT-ATTTGATTGGAAATTGCT--CCAGGCTCTT s ponAbe2.chr12 353594 44 - 136387465 AACTAATCACTTCA---------------GT-ATTTGATTGGAAATTGCT--CCAGGCTCTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306076 44 - 135371336 AACTAATCACTTCA---------------GT-ATTTGATTGGAAATTGCT--CCAGGCTCTT i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12497 43 - 13947 AATTAATCAC-CCA---------------GT-TTCTTATTAGGAATTGTG--CCAGACTCTT i tupBel1.scaffold_78714.1-13947 C 0 C 0 s bosTau4.chr17 30047364 34 - 76506943 ------------CA---------------GT-GTTTGATTAGAAATTGCTTGTCTTTTTTAT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64205305 44 - 94057673 aatTGAGCTCTCCA---------------GT-ATTTGATTGAAAATTGCT--CCAGTCTCTT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257089 27 + 42029645 AATCAA--TCACTA---------------GT-ATTTGAGCATAAA----------------- i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 7178 37 + 12097 --------TCCTAA---------------GCAATTTGCTTAGAAATTGCT--CCAGTATCAT i sorAra1.scaffold_136400 C 0 C 0 s loxAfr3.scaffold_113 152900 44 - 3408981 aatTAACCACCCCA---------------GT-ACTCAATCAGAAATTGCT--CCAGACTCCT i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 45239130 59 + 71658100 CATTCAATGCtttaaaaaaatatatatatat-atattattttaaGATGCT--TTTGGATCTT i danRer6.chr4 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 9892 166 - 16241 I e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I a score=-1723.000000 s hg19.chrUn_gl000223 178156 69 + 180455 -----------TCATCTC-ATGATCA--------CTGTTCTTTGAGTATATT----------TAATATTTCCTTATTTAAAAGTTCATGTATTTAgcca s ponAbe2.chr12 353638 69 - 136387465 -----------TCATCTC-ATGATCA--------CTGTTCTTTGAGTATATT----------TAATATTTCCTTATTTAAAAGTTCATGTATTTagcca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306120 69 - 135371336 -----------TCATCTC-ATGATCA--------CTGTTCTTTGAGTATATT----------TAATATTTCCTTATTTAAAAGTTCATGTATTTagcca i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_36630 10058 42 - 16241 -----------TCATTTT-ATAATTT--------TGTCTTTTTCAGTA-----------------------------TAAAAATTACTAGG-------- i tarSyr1.scaffold_36630 I 166 n 166 s tupBel1.scaffold_78714.1-13947 12540 76 - 13947 -----------TTATCTC-ATGATGAGATAAAAGATGTTCCTTAGTTATATT----------TTACATTTCATTGTTTAGAAGTTTATAT-TTTAGTGA i tupBel1.scaffold_78714.1-13947 C 0 C 0 s bosTau4.chr17 30047398 41 - 76506943 ------------CTCATC-ATGATCA--------------CTTGAATATATT----------TCATTTTTCCTTATTT--------------------- i bosTau4.chr17 C 0 I 1 s equCab2.chr8 64205349 46 - 94057673 ------------TTGGTT-GTGATCA--------CTCTTCCTTGGGTATATT----------TCATATTTCCATATT---------------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257116 49 + 42029645 -------------CGCTC-ATGATCA--------CTGCTTCTTGAGCATATT----------TCATCTTTTCTCATTTAAA------------------ i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 7215 21 + 12097 ------------TTACCCAATAATCA--------GTGTTTT---------------------------------------------------------- i sorAra1.scaffold_136400 C 0 I 355 s loxAfr3.scaffold_113 152944 55 - 3408981 -----------TAATCTC-ACATTCA--------CTGTTTGTTGAGTATATT----------TCATCTCTTAT--TTTACAAGTTTA------------ i loxAfr3.scaffold_113 C 0 C 0 s danRer6.chr4 45239189 90 + 71658100 TTATTTTGAGACATTTTT-AAGATTA--------TTTTATTTTAAACACATCATTATGATTGTAAGATTCTTTTATTTGAAGATTCTTTTATTTGAACA i danRer6.chr4 C 0 N 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I a score=9621.000000 s hg19.chrUn_gl000223 178225 28 + 180455 ---------ggcgtggtggctcacgc-ctgtaatccca s ponAbe2.chr12 353707 28 - 136387465 ---------ggcatggtggctcacgc-ctgtaatccca i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306189 28 - 135371336 ---------ggtgtggtggctcacgc-ctgtaatccca i panTro2.chr12 C 0 C 0 s tupBel1.scaffold_78714.1-13947 12616 38 - 13947 TCGATAGGTAGCGTGGTGGTTAAGGTGCTGAACTCCCA i tupBel1.scaffold_78714.1-13947 C 0 I 435 e echTel1.scaffold_287190 10311 440 + 41182 I e sorAra1.scaffold_136400 7236 355 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 10100 166 - 16241 I e loxAfr3.scaffold_113 152999 0 - 3408981 C e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I e bosTau4.chr17 30047439 1 - 76506943 I e equCab2.chr8 64205395 0 - 94057673 C e canFam2.chr26 3257165 0 + 42029645 C a score=70766.000000 s hg19.chrUn_gl000223 178253 269 + 180455 gcactttgggaggccgaggcaggtggatcatgaggtcaggagatcaagaccatcctggctaacgtggtgaaaccccatctctactaaaaatacaaaaattagccaagtgtgatggcgcacacctgtagtctcagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgtggtgagctgagatcgcaccactgcactccagcgtggtgacagagtgagactccctct-aaaaaaaaaataaggctgggcgca s ponAbe2.chr12 353735 270 - 136387465 gcactttgggaggccgaggcaggcggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaattagccaagtatgatggcgcacacctgtaatctcagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgagattgtgccactgcactccagtgtggtgacagagcgagactccctctaaaaaaaaaaaTAAggctgggtgcg i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306217 269 - 135371336 gcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaattagccaagtgtgatggcgcacacctgtagtctcagctactcaggaggctgaggcaggggaaacgcttgaacccgggaggtggaggttgcggtgagctgatgtcgcaccactgcactccagcgtggtgacagagcgaaactccctct-aaaaaaaaaaTAAggctgggcgca i panTro2.chr12 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 12654 435 - 13947 I e sorAra1.scaffold_136400 7236 355 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_36630 10100 166 - 16241 I e loxAfr3.scaffold_113 152999 0 - 3408981 C e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I e bosTau4.chr17 30047439 1 - 76506943 I e equCab2.chr8 64205395 0 - 94057673 C e canFam2.chr26 3257165 0 + 42029645 C a score=20163.000000 s hg19.chrUn_gl000223 178522 60 + 180455 gtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcac--gaggtca s tarSyr1.scaffold_38559 7377 62 - 15879 GTTGTTTAGAGAAAACatcacagcactttgggaggccaaggtaggagaactgcttgagccca i tarSyr1.scaffold_38559 I 897 C 0 s panTro2.chr12 306486 60 - 135371336 gtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcac--gaggtca i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 354005 60 - 136387465 gtgggtcacacctgtaatcccagcactttgtggggctgaggcgggtgtatcac--gaggtca i ponAbe2.chr12 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 12654 435 - 13947 I e sorAra1.scaffold_136400 7236 355 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152999 0 - 3408981 C e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I e bosTau4.chr17 30047439 1 - 76506943 I e equCab2.chr8 64205395 0 - 94057673 C e canFam2.chr26 3257165 0 + 42029645 C a score=16143.000000 s hg19.chrUn_gl000223 178582 47 + 180455 agagatcgagaccatcctggctaa-------cacggtgaaaccccgtctctatt s ponAbe2.chr12 354065 47 - 136387465 agagatcgagaccatcctggctaa-------cacggtgaagccccatatctact i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306546 47 - 135371336 agagatcgagaccatcctggctaa-------catggtgaaaccccgtctctact i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_38559 7439 46 - 15879 ggagttctagaccagtctgggcaa-------catagcaatacctcatttctac- i tarSyr1.scaffold_38559 C 0 I 19 s oryLat2.chr13 664966 54 + 33409148 AGGGACCAGAACCCTCACAGATTAAAGAGGCCAAAGAGGagctctgcatcagtc i oryLat2.chr13 N 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 12654 435 - 13947 I e sorAra1.scaffold_136400 7236 355 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152999 0 - 3408981 C e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e rheMac2.chr11 300659 1123 - 134511895 I e cavPor3.scaffold_248 336877 126 + 667635 I e bosTau4.chr17 30047439 1 - 76506943 I e equCab2.chr8 64205395 0 - 94057673 C e canFam2.chr26 3257165 0 + 42029645 C a score=61142.000000 s hg19.chrUn_gl000223 178629 115 + 180455 aaaaatacaaaaagtagccgggtgt------ggtggcacatgcct-----gtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcactg--------agccaaga s rheMac2.chr11 301782 114 - 134511895 aaaaatacaaaaaTTTgctgggtgt------cgtggtgcatgcct-----gtagtcccagctacttgggaggaggaggcagga-aattgctttaacccaggaggcagaggttgtagtg--------agctgaga i rheMac2.chr11 I 1123 C 0 s ponAbe2.chr12 354112 115 - 136387465 aaaaatacaaaaaatagccaggtgt------ggtggcacatgcct-----gtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtg--------agccaaga i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306593 115 - 135371336 aaaaatacaaaaagtagccaggtgt------ggtggcacatgcct-----gtaattccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtg--------agccaaga i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_38559 7504 96 - 15879 -------------------aggtgt------ggtatcttgtgtct-----gtagtcctggctactggagaggatgaagtgggaggatcctttgatcccaggcagttggaactatggtg--------agttgtaa i tarSyr1.scaffold_38559 I 19 C 0 s oryLat2.chr13 665020 130 + 33409148 ---aggatgaagagcagcttgatttgaagcaggagactgataccttgatggcaatttctacttatgaggaagatgagaacagtgaagcagatctaaacaatcagcagagctt-taatgtaactgatagtcagga i oryLat2.chr13 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 12654 435 - 13947 I e sorAra1.scaffold_136400 7236 355 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152999 0 - 3408981 C e gasAcu1.chrIII 3447535 0 - 16798506 I e xenTro2.scaffold_1417 678 0 - 72846 I e cavPor3.scaffold_248 336877 126 + 667635 I e bosTau4.chr17 30047439 1 - 76506943 I e equCab2.chr8 64205395 0 - 94057673 C e canFam2.chr26 3257165 0 + 42029645 C a score=1700.000000 s hg19.chrUn_gl000223 178744 44 + 180455 tcatgccactgcactcca-----------------gcct-ggtgacagc-acaagactccatc s rheMac2.chr11 301896 44 - 134511895 tcacaccactgtactcca-----------------gcct-ggtgactgc-atgaggttccgtc i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354227 44 - 136387465 tcacgccactgcactcca-----------------gccc-ggtgacagc-acgagactccatc i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306708 44 - 135371336 tcatgccactgcactcca-----------------gcct-ggtgacagc-acgagactccatc i panTro2.chr12 C 0 C 0 s tarSyr1.scaffold_38559 7600 34 - 15879 tcatgcc-ctgcacttca-----------------acccagatcacaga-gtg---------- i tarSyr1.scaffold_38559 C 0 n 0 s oryLat2.chr13 665150 61 + 33409148 -tgaaaaTCCCActtcaactacagatgaagagattGACC-CAGAGAACACACAACAATGGACC i oryLat2.chr13 C 0 C 0 s gasAcu1.chrX 8373736 42 - 15657440 TCATGAATCAGTATTCAA-----------------GGCC-CATAAAAGAGTCCATAGTGA--- i gasAcu1.chrX n 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 12654 435 - 13947 I e sorAra1.scaffold_136400 7236 355 + 12097 I e oryCun2.chrUn0106 740654 765 + 1032594 I e loxAfr3.scaffold_113 152999 0 - 3408981 C e xenTro2.scaffold_1417 678 0 - 72846 I e cavPor3.scaffold_248 336877 126 + 667635 I e bosTau4.chr17 30047439 1 - 76506943 I e equCab2.chr8 64205395 0 - 94057673 C e canFam2.chr26 3257165 0 + 42029645 C a score=-107189.000000 s hg19.chrUn_gl000223 178788 44 + 180455 -tcaaaaaaa-tata---tataaacagtaaaaataaaAGTTCATGTA-------TT s rheMac2.chr11 301940 38 - 134511895 -acaaaa-------a---cataaataataaaaataaaaGTTCGTGTA-------TT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354271 44 - 136387465 -tcaaaaaaa-TATA---TACAAATAGTAAAAATAAAAGTTCATGTA-------TT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306752 44 - 135371336 -tcaaaaaTA-TATA---TATAAACAGTAAAAATAAAAGTTCATGTA-------TT i panTro2.chr12 C 0 C 0 s oryLat2.chr13 665211 40 + 33409148 -CCAAGAGAC--------TGTAAAGAATGCGGTAAAAGTTTTAGTTA-------CT i oryLat2.chr13 C 0 I 21 s gasAcu1.chrX 8373778 47 - 15657440 --TAAGAAACCCTTTTCTTGTGAACCATGTGGAAAAGAATTCAGATA-------TA i gasAcu1.chrX C 0 I 21 s fr2.chrUn 104677561 42 - 400509343 --CAGGAAAG--------CACGGAAAAT----CAAATGCTTCAGAGAGTAGAGCTT i fr2.chrUn N 0 I 22 s petMar1.Contig5115 16497 44 - 23967 TTGGAGAAAG-----AGAAGCAGTCAAGAAGAACAATgcataacata-------tt i petMar1.Contig5115 N 0 C 0 s cavPor3.scaffold_248 337003 32 + 667635 --------------A---CATATAAAAGAAAATCACAGATGAATGTA-------TG i cavPor3.scaffold_248 I 126 C 0 s xenTro2.scaffold_1199 61227 14 - 134240 ---------------------------TAGAAATGAAGGAT--------------- i xenTro2.scaffold_1199 I 9710 C 0 s canFam2.chr26 3257165 11 + 42029645 --------------------------------------GTTTATGTT-------TA i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 7591 13 + 12097 ------------------------------------aagtttatatt-------ta i sorAra1.scaffold_136400 I 355 C 0 s equCab2.chr8 64205395 16 - 94057673 ---------------------------------TAAAAGTTCATGTT-------TT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30047440 14 - 76506943 -----------------------------------AAAGTTTGTGTT-------TA i bosTau4.chr17 I 1 C 0 s danRer6.chr4 43839663 30 - 71658100 ------------------TACAAATTTT-AGAAAAAAGATTTTGTTA-------TT i danRer6.chr4 N 0 I 1 e echTel1.scaffold_287190 10311 440 + 41182 I e tupBel1.scaffold_78714.1-13947 12654 435 - 13947 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_38559 7634 0 - 15879 I e loxAfr3.scaffold_113 152999 0 - 3408981 C a score=-78911.000000 s hg19.chrUn_gl000223 178832 44 + 180455 TAAACATTTG-TAATTTAAAA----------GTTCATT-----------------TTCAT-----TTC----------------------TGTTAAA------AT s cavPor3.scaffold_248 337035 26 + 667635 T----GTTTA-TAATTT-----------------------------------------AT-----TTC----------------------TGTTAAC------AT i cavPor3.scaffold_248 C 0 C 0 s rheMac2.chr11 301978 44 - 134511895 TAAACATTTG-taatttaaaa----------attaatt-----------------ttcat-----tta----------------------tgttaaa------at i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354315 44 - 136387465 TAAACATTTG-TAATTTAAAA----------ATTCATT-----------------TTCAT-----TTC----------------------TGTTAAA------AT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306796 44 - 135371336 TAAACATTTG-TAACTTAAAA----------GTTCATT-----------------TTCAT-----TTC----------------------TGTTAAA------AT i panTro2.chr12 C 0 C 0 s canFam2.chr26 3257176 98 + 42029645 TAAACATTTG-TAACTTTTAAATGTTTTCATTTCTGTTAGAAAGGttttaaagcttttatataaattccaattagttaacatacagtgtaTGTCAAA------AT i canFam2.chr26 C 0 C 0 s sorAra1.scaffold_136400 7604 41 + 12097 taaacatttg-taattttata----------atctttt-------------------------aattt----------------------ttctaaa------gt i sorAra1.scaffold_136400 C 0 C 0 s equCab2.chr8 64205411 39 - 94057673 TATAAATTTG-TAAATTTAAA----------TTCTGTT---------------------------TTC----------------------TGTTAAA------AT i equCab2.chr8 C 0 C 0 s bosTau4.chr17 30047454 44 - 76506943 TAAACATTTG-TAATTTCAAA----------ATCTGTT-----------------TTCAT-----TTC----------------------TATTAAA------AA i bosTau4.chr17 C 0 C 0 s loxAfr3.scaffold_113 152999 42 - 3408981 TAAACATTTA-TCATTTAAAA----------AT--GTT-----------------TTCAT-----TTC----------------------TGTTAAA------TG i loxAfr3.scaffold_113 C 0 C 0 s tupBel1.scaffold_78714.1-13947 13089 39 - 13947 -----ATTCC-TCATTTTAGA----------ATTTATC-----------------TTCAT-----TTC----------------------TGTTAAA------AT i tupBel1.scaffold_78714.1-13947 I 435 N 0 s xenTro2.scaffold_1199 61241 40 - 134240 --AATAATTA-TGA--TAAAA----------ATTCCCA-----------------CCAAT-----CTC----------------------CACATAA------AT i xenTro2.scaffold_1199 C 0 C 0 s fr2.chrUn 104677625 20 - 400509343 CCAATGTCTA-------------------------------------------------------ATC----------------------TGCAAGG-------- i fr2.chrUn I 22 C 0 s gasAcu1.chrX 8373846 35 - 15657440 TGATTGTTCA-CAC---TGGG----------GAAAGGC-----------------CGTAT-----TCC----------------------TGC------------ i gasAcu1.chrX I 21 C 0 s oryLat2.chr13 665272 39 + 33409148 TGAGGATCCA-TAA---AAAA----------GTTAAGC-----------------CTTTT-----GCT----------------------TGTAAAG-------- i oryLat2.chr13 I 21 C 0 s danRer6.chr4 43839694 49 - 71658100 TGAATATATAGGAA---TAAA----------AATAGGC-----------------CATTTACA--GCT----------------------TTCAAATCTGTCT-- i danRer6.chr4 I 1 C 0 s petMar1.Contig5115 16541 34 - 23967 ----ttttta-tga-taagaA----------ACTAAGT---------------------------TTC----------------------TGCCAAT------GT i petMar1.Contig5115 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=-19223.000000 s hg19.chrUn_gl000223 178876 36 + 180455 TGTCAATGCCCAATAAGTACAC----------------------ATTA--TTTGAGGGA-A s rheMac2.chr11 302022 37 - 134511895 tGTCAATGCCCAATAAGTACAC----------------------ATTA--TTTGAGAGATT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354359 36 - 136387465 TGTCAATGCCCAATAAGTACAC----------------------ATTA--TTTGAGGGA-A i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306840 36 - 135371336 TGTCAATGCCCAATAAGTACAC----------------------ATTA--TTTGAGGGA-A i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337061 36 + 667635 TTTCAATGTCCCATATGTAGAT----------------------ATTA--TTTGAAAGT-T i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30047498 38 - 76506943 GTTCAAAGCCTAATAAGTAGAT----------------------ATTGTATGTGGGAGA-T i bosTau4.chr17 C 0 I 9 s equCab2.chr8 64205450 38 - 94057673 TTTCAATGCCCAATAAGTAGAC----------------------ATTGTATTTGAGAGA-T i equCab2.chr8 C 0 I 9 s sorAra1.scaffold_136400 7645 26 + 12097 aattaatG--------GTAGAC----------------------ACTA----TGAGTGA-T i sorAra1.scaffold_136400 C 0 I 5 s canFam2.chr26 3257274 38 + 42029645 TTTTAATGTCCAGTAAGTAGAT----------------------ATTATATTTTGGAGG-A i canFam2.chr26 C 0 I 25 s loxAfr3.scaffold_113 153041 37 - 3408981 CTTCAGTGACCAAAAAGTAGAC----------------------ACTGTATTTAAGGAA-- i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_1199 61281 33 - 134240 CTGAAATAACAAA---ATATAT----------------------ATCA--TGTGGGAAA-T i xenTro2.scaffold_1199 C 0 I 16 s fr2.chrUn 104677645 38 - 400509343 ----AGGATGTCAAAACAAGTCTAAA------------------ATCTCATTTGAAAAC-T i fr2.chrUn C 0 I 23 s gasAcu1.chrX 8373881 16 - 15657440 --------------------------------------------ATCACCTGTGGGAAA-A i gasAcu1.chrX C 0 I 11 s oryLat2.chr13 665311 53 + 33409148 ----AATGTACTAA---AAGTTTTAGTAAGTTAAGTtatctcaaatcacacatgagaac-a i oryLat2.chr13 C 0 I 18 s danRer6.chr4 43839743 42 - 71658100 TATCAATGACCAAAATGACTTTTATG------------------ATCAATTATGTAAGG-a i danRer6.chr4 C 0 I 24 s petMar1.Contig5115 16575 30 - 23967 ------TCTCCAAGATTTAACT----------------------TTCAATTGTAACAA--- i petMar1.Contig5115 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e oryCun2.chrUn0106 740654 765 + 1032594 I e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=-98561.000000 s hg19.chrUn_gl000223 178912 30 + 180455 TTTTAAA--------------AACTGGGATTAT------GGCGCCATTTC s rheMac2.chr11 302059 30 - 134511895 TTTTAAA--------------AAGTAGGATTAT------GGCCCAATTTC i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354395 30 - 136387465 TTTTAAA--------------AACTGGGATTAT------GGCGCCATTTC i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306876 30 - 135371336 TTTTAAA--------------AACTGGGATTAT------GGCGCCATTTC i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337097 31 + 667635 CTCCCCA--------------TCCCAGGATCTT-----AAGCTTCATTTA i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 741419 31 + 1032594 tttagaa--------------aaCTGGAATCCC-----AGGTCCCATTTC i oryCun2.chrUn0106 I 765 C 0 s bosTau4.chr17 30047545 31 - 76506943 TTTTTAATG------------GACTGGGCTC-------ATGCTCCATTTC i bosTau4.chr17 I 9 C 0 s equCab2.chr8 64205497 31 - 94057673 TGTGTGT--------------GACTAGGATCCT-----AGGCTCCATTTC i equCab2.chr8 I 9 C 0 s sorAra1.scaffold_136400 7676 23 + 12097 ---------------------AACTGGGTCCaa-----agggttgttgt- i sorAra1.scaffold_136400 I 5 N 0 s canFam2.chr26 3257337 31 + 42029645 ttttTAA--------------AACTGGGATCCT-----AGGCTCTATGTC i canFam2.chr26 I 25 C 0 s loxAfr3.scaffold_113 153078 31 - 3408981 TGTTTTA--------------AACTGATATACT-----AGACTCCATTTC i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_1199 61330 28 - 134240 TCATAAA--------------CATTTTAATTCTAATAGAGAC-------- i xenTro2.scaffold_1199 I 16 N 0 s fr2.chrUn 104677706 4 - 400509343 TTGC---------------------------------------------- i fr2.chrUn I 23 N 0 s gasAcu1.chrX 8373908 4 - 15657440 TCAT---------------------------------------------- i gasAcu1.chrX I 11 I 6 s oryLat2.chr13 665382 4 + 33409148 tttt---------------------------------------------- i oryLat2.chr13 I 18 I 6 s danRer6.chr4 43839809 4 - 71658100 tttc---------------------------------------------- i danRer6.chr4 I 24 C 0 s petMar1.Contig5115 16605 22 - 23967 --------GTCCCCAGAATAACATTAAGTT-------------------- i petMar1.Contig5115 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=29335.000000 s hg19.chrUn_gl000223 178942 22 + 180455 AGAAGC-TTTA-TGCAATAAGCAT s rheMac2.chr11 302089 22 - 134511895 AGAAGC-TTTA-CATGATAAGCAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354425 22 - 136387465 AGAAGC-TTTA-TGCAATAAGCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306906 22 - 135371336 AGAAGC-TTTA-TGCAATAAGCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337128 21 + 667635 AAAAAC-TTAA-TTCA-TATTCAT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 741450 22 + 1032594 AGAAGT-TTTA-TTCAGTAAGCAT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30047576 22 - 76506943 CGAAGA-TTTG-TTCAATAAGCTT i bosTau4.chr17 C 0 C 0 s equCab2.chr8 64205528 22 - 94057673 AGAAGT-TTTC-TTCAATAAGCAT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257368 19 + 42029645 ---AGT-TTTA-TTCAATGAGCAT i canFam2.chr26 C 0 C 0 s loxAfr3.scaffold_113 153109 23 - 3408981 GAAATTTTTTT-TTCGATAAGCAT i loxAfr3.scaffold_113 C 0 C 0 s fr2.chrUn 297535800 19 + 400509343 AAAGCT-TTTA----AACAAACAT i fr2.chrUn N 0 I 4 s gasAcu1.chrX 8373918 19 - 15657440 TAAAGG-CTCA----TATAAGCAT i gasAcu1.chrX I 6 n 6 s oryLat2.chr13 665392 19 + 33409148 aagaat-gtga----aaaaagttt i oryLat2.chr13 I 6 I 4 s danRer6.chr4 43839813 16 - 71658100 ---aat-ttac----tataacttc i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 16627 23 - 23967 AGACCT-TTTGGTAGAATTCGAAT i petMar1.Contig5115 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=26528.000000 s hg19.chrUn_gl000223 178964 25 + 180455 AATAATT-GAAG------------GAATTACACAGTAT s rheMac2.chr11 302111 25 - 134511895 AATAATT-GAAG------------GAATTACACAGTAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354447 25 - 136387465 AATAATT-GAAG------------GAATTACACAGTAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 306928 25 - 135371336 AATAATT-GAAG------------GAATTACACAGTAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337149 19 + 667635 AATTATT-GAGT------------ATATTACA------ i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 741472 25 + 1032594 AATCATT-GAAG------------AACTTATACAGTAT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30047598 26 - 76506943 AATGATTAGGGA------------AATTTACACAGTAT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3257387 25 + 42029645 AATTGTT-GGGG------------GATTTATACAGTAT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64205550 25 - 94057673 AATCATT-GAGG------------GATTCACACAGTAT i equCab2.chr8 C 0 I 1 s loxAfr3.scaffold_113 153132 25 - 3408981 AATCATT-GGAA------------AATTTACACAGTAT i loxAfr3.scaffold_113 C 0 C 0 s fr2.chrUn 297535823 18 + 400509343 ACTGTCT-GTA-------------------CACATGAA i fr2.chrUn I 4 C 0 s oryLat2.chr13 665415 29 + 33409148 aatATAT-GTAA--------TCTCAAAAcgcacatgag i oryLat2.chr13 I 4 C 0 s danRer6.chr4 43839829 33 - 71658100 ----tat-gttaagcggctttgacacaatatacattgt i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 16650 25 - 23967 ATTGGTT-CATA------------GTTTTATTccgcct i petMar1.Contig5115 C 0 C 0 e echTel1.scaffold_287190 10311 440 + 41182 I e tarSyr1.scaffold_38559 7634 0 - 15879 I e gasAcu1.chrX 8373937 6 - 15657440 I a score=3937.000000 s hg19.chrUn_gl000223 178989 22 + 180455 GGTTCATT--TTTTTCTCTTTTTA-- s loxAfr3.scaffold_113 153157 20 - 3408981 GGTTCATT---TTT-TCCTTTTTA-- i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_287190 10751 21 + 41182 GATTTATT--GGTC-TCCTTCCTA-- i echTel1.scaffold_287190 I 440 C 0 s equCab2.chr8 64205576 21 - 94057673 GGTTCATT--TTTT-TCCTTTTTA-- i equCab2.chr8 I 1 C 0 s canFam2.chr26 3257412 21 + 42029645 GATTCATT--TTTT-TCCTTTTTA-- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30047624 20 - 76506943 GGTTCA-T--TTTT-TCCTTTTTA-- i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 741497 24 + 1032594 GGTTCGTTTTTTTTTTTCTTTTTA-- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 337168 14 + 667635 ----------TTTTTTCCATTTTA-- i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 306953 21 - 135371336 GGTTCATT--TTTT-CTCTTTTTA-- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 354472 21 - 136387465 GGTTCATT--TTTT-CTCTTTTTA-- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 302136 22 - 134511895 GGTTCATT--TTTTTCTCTTTTTA-- i rheMac2.chr11 C 0 C 0 s fr2.chrUn 297535841 1 + 400509343 -----------------------G-- i fr2.chrUn C 0 I 17 s oryLat2.chr13 665444 1 + 33409148 -----------------------a-- i oryLat2.chr13 C 0 I 32 s danRer6.chr4 43839862 1 - 71658100 -----------------------a-- i danRer6.chr4 C 0 C 0 s petMar1.Contig5115 16675 19 - 23967 -----gtt--ttttttcctctccata i petMar1.Contig5115 C 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I e gasAcu1.chrX 8373937 6 - 15657440 I a score=24854.000000 s hg19.chrUn_gl000223 179011 21 + 180455 G---AAG-----TCTGGCTAGA---TAATCCC s loxAfr3.scaffold_113 153177 24 - 3408981 G---AAG-----TCTGGCTAGATAATAATCAC i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_287190 10772 27 + 41182 G---AAGAAT--CCTGGCAAATTAATCATCCC i echTel1.scaffold_287190 C 0 C 0 s equCab2.chr8 64205597 27 - 94057673 GAAGAAG-----TCTGGCTAGATGATAATCTC i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257433 27 + 42029645 GAAGAAG-----TCTGGCTAGATAACAGTCTC i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30047644 27 - 76506943 GAAAAAG-----TCTGGCTAGATAATAATCTC i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 741521 24 + 1032594 G---AAG-----TCTGGCTAGATAATGATTCC i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 337182 24 + 667635 G---AAG-----TCTGACTAGACAGTAATTCC i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 306974 21 - 135371336 G---AAG-----TCTGGCTAGA---TAATCCC i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 354493 21 - 136387465 G---AAG-----TCTGGCTAGA---TAATCCC i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 302158 21 - 134511895 G---AAG-----TCTGGCTAGA---TAATCCC i rheMac2.chr11 C 0 C 0 s tetNig2.chrUn_random 56324489 15 + 107808587 --------GCAGTCTGGCTGGA---------G i tetNig2.chrUn_random N 0 C 0 s fr2.chrUn 297535859 15 + 400509343 --------GCCATATGTATGTA---------A i fr2.chrUn I 17 C 0 s petMar1.Contig5115 16694 20 - 23967 ----GAG-----GCTGCCAAGAGGACACT--- i petMar1.Contig5115 C 0 N 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I e danRer6.chr4 43839863 0 - 71658100 C e oryLat2.chr13 665445 32 + 33409148 I e gasAcu1.chrX 8373937 6 - 15657440 I a score=38753.000000 s hg19.chrUn_gl000223 179032 29 + 180455 AAAATGTGGCTCCGAGATAATCAAGACAA--------------- s loxAfr3.scaffold_113 153201 29 - 3408981 AATATGAGGCACCAGGATAATCAAGACAA--------------- i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_287190 10799 26 + 41182 ACT---CGGCACCAGGAAAACATTGACAA--------------- i echTel1.scaffold_287190 C 0 C 0 s equCab2.chr8 64205624 29 - 94057673 AAAATGTGGCACCAGGATAATCAAGACAA--------------- i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257460 29 + 42029645 AAAATGTGGCACCAGGATAATCAAGACAA--------------- i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30047671 29 - 76506943 AAAATGTGGCATCAGGATAATCAAGACAA--------------- i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 741545 29 + 1032594 AAAATATGGCATCAAGATAATCAAGACAA--------------- i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 337206 27 + 667635 AAAATACGGCATCAAGACAATCAAGAC----------------- i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 306995 29 - 135371336 AAAATGTGGCTCCGAGATAATCAAGACAA--------------- i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 354514 29 - 136387465 AAAATGTGGCTCCGAGATAATCAAGACAA--------------- i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 302179 29 - 134511895 AAAATGTGGCTCCGAGATAATCAAGACAA--------------- i rheMac2.chr11 C 0 C 0 s tetNig2.chrUn_random 56324504 27 + 107808587 CAACTTTG-------AGTTCCAGAGCAGACGAGA---------- i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 297535874 42 + 400509343 TACATGTGGCA--AAGATTTCAGAGACAAAGCAAGTTTGTCAAG i fr2.chrUn C 0 C 0 s oryLat2.chr13 665477 42 + 33409148 agaatgtgata--aaagttttaatctcatatctagtctcaaaaa i oryLat2.chr13 I 32 C 0 s danRer6.chr4 43839863 31 - 71658100 -------------aaagcactagataaataaagattaattaaaC i danRer6.chr4 C 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I e gasAcu1.chrX 8373937 6 - 15657440 I a score=87984.000000 s hg19.chrUn_gl000223 179061 34 + 180455 CCTTAAAAGTATGGAGAGAG---------GCCAT--AAATATGAT s danRer6.chr4 43839894 43 - 71658100 CTGCTTAAATGTGTACATGTTAATGGGCCGAACA--AAACATGAT i danRer6.chr4 C 0 I 7 s oryLat2.chr13 665519 34 + 33409148 acacatgagaactcacacag---------gagaa--aagcctttt i oryLat2.chr13 C 0 I 9 s fr2.chrUn 297535916 34 + 400509343 CCACATGAGAGTCCACACAG---------GCGAG--AAGCCCTGT i fr2.chrUn C 0 I 9 s tetNig2.chrUn_random 56324531 32 + 107808587 --ACACCACAATTCACACAG---------GTGAA--AAGCTCTAC i tetNig2.chrUn_random C 0 I 9 s xenTro2.scaffold_677 234674 29 + 553670 CTTTAAAAAT-----GAAGG---------GTAAT--AAATATGAT i xenTro2.scaffold_677 N 0 C 0 s loxAfr3.scaffold_113 153230 34 - 3408981 GCTTAAAAGTATGGAGAGAT---------GCCAT--GAATATGAT i loxAfr3.scaffold_113 C 0 C 0 s echTel1.scaffold_287190 10825 34 + 41182 GCTTGACCCTATGGAGCGAC---------AGCAG--GAATGTGAT i echTel1.scaffold_287190 C 0 C 0 s equCab2.chr8 64205653 28 - 94057673 ------AGGTATGGAGAGAG---------GCCAT--GAATATGAT i equCab2.chr8 C 0 C 0 s canFam2.chr26 3257489 34 + 42029645 GCTTAGAAGTATGGAGAGAG---------GCCAT--GAATATGAT i canFam2.chr26 C 0 C 0 s bosTau4.chr17 30047700 34 - 76506943 GCTTAAAAGTTTGGAGAGAG---------GCCAT--GAATATGAC i bosTau4.chr17 C 0 C 0 s oryCun2.chrUn0106 741574 34 + 1032594 GCTTAAAAGTATGGAGAGAG---------GCCAT--CAATATGAT i oryCun2.chrUn0106 C 0 C 0 s cavPor3.scaffold_248 337233 30 + 667635 ----AAAAGTATGCAGACAG---------GCCAC--GGATATGAT i cavPor3.scaffold_248 C 0 C 0 s panTro2.chr12 307024 34 - 135371336 CCTTAAAAGTATGGAGAGAG---------GCCAT--AAATATGAT i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 354543 34 - 136387465 CCTTAAAAATATGGAGAGAG---------GCCAT--AAATATGAT i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 302208 34 - 134511895 CCTTAAAAGTATGGAGAGAG---------GCCAT--AAATATGAT i rheMac2.chr11 C 0 C 0 s petMar1.Contig2426 10115 24 + 37044 ------------ggagagaa---------acttttcaagtgcact i petMar1.Contig2426 N 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I e gasAcu1.chrX 8373937 6 - 15657440 I a score=71091.000000 s hg19.chrUn_gl000223 179095 39 + 180455 GTTTTTGGAAAAATATTT--------------AATTCAAGCATAAACATTGTT s rheMac2.chr11 302242 39 - 134511895 GTTTTTGGAAAAATATTT--------------AATTCAAACATAAACGTTGTT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354577 39 - 136387465 GTTTTTGGAAAAATATTT--------------AATTCAAGCGTAAACATTGTT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307058 39 - 135371336 GTTTTTGGAAAAATATTT--------------AATTCAAGCATAAACATTGTT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337263 39 + 667635 GTTTTGGGGAAAATATTT--------------AATTCAAGCATGAATTTTGTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 741608 39 + 1032594 GTCTTGGAGAAAATATTT--------------AATTCAAGCATAAACTTTGTT i oryCun2.chrUn0106 C 0 C 0 s bosTau4.chr17 30047734 39 - 76506943 ATCTTTGAGAGAATGTTT--------------CATTTAGGCATTAACTTTGAT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3257523 39 + 42029645 GTTTTTAGGAAAATATTT--------------CATTCAAGCATTAACTTTGTT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64205681 39 - 94057673 GTTTTTGGGAAAATATTT--------------CATTCCAGCATTAACTTTGTT i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 10859 37 + 41182 GTGCTTGGAAAAATATTT--------------CATCTGAGGAAAAACTTGG-- i echTel1.scaffold_287190 C 0 C 0 s loxAfr3.scaffold_113 153264 39 - 3408981 GTTTTGGGGAAAATATTT--------------CATTCAAGCATAAACTTTGCT i loxAfr3.scaffold_113 C 0 C 0 s xenTro2.scaffold_677 234703 43 + 553670 --------AAAAACGCTGATAACTCCCCACAAAAATCACGGATAAA--TGATT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 56324572 39 + 107808587 acatgtgggaaagagTTC--------------CATCAAAACTCCAAACTAACC i tetNig2.chrUn_random I 9 T 10596 s fr2.chrUn 297535959 39 + 400509343 ACATGTGGGAAAGctttt--------------aaaagaagaaatgacTTGTCA i fr2.chrUn I 9 I 15 s gasAcu1.chrUn 58150890 39 + 62550211 ATTTAGAAAAAACGCTAT--------------ATAAAATGAAGGTATTATTAT i gasAcu1.chrUn I 1021 I 7 s oryLat2.chr13 665562 39 + 33409148 gattgtgataaaagcttt--------------agtcaaatatctcatctctat i oryLat2.chr13 I 9 N 0 s danRer6.chr4 43839944 28 - 71658100 ATTTTACATTTAATGTGC--------------ATCAAAATTA----------- i danRer6.chr4 I 7 C 0 s petMar1.Contig2426 10139 32 + 37044 gtgtgtgagaaagcattt---------------gcacagtcatcagt------ i petMar1.Contig2426 C 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=-113346.000000 s hg19.chrUn_gl000223 179134 153 + 180455 ----------------------CATGTAGGAC--TGCGATCCCATAAATGTGGCACAGGAGAAAAAAGTTTGAAATGTCCTT-TTGATTTGCTTATTCCAAAAA---------ATAATTG--TGAAAGAAAGAAAATTGA-------------TG--AAC------TCAA------TAAGAAATTA----TT-----------G--------------T-----------TCTG----------T-----------------------------A---TCA---------------AACCTG--G-----CAGAACCCAT s rheMac2.chr11 302281 150 - 134511895 ----------------------CATGTAGGAA--TGAGATCCCATAAATGTGGCACAGGAGAAAAAAGTTTGAAACGTCCTT-TTGATTTGCTTATTCCAAGAA---------ATAACGG--TGAAAGAAAGAAAATTGA-------------TG--AGC------TCAA------TAATAAATTA----CT-----------A--------------T-----------TCTG----------T-----------------------------A---TT------------------CATG--A-----CAGAACCCAT i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354616 153 - 136387465 ----------------------CAGGTAGCAA--TGAGATCCCATAAATGTGGCACAGGAGAAAAAAGTTTGAAATGTCCTT-TTGATTTGCTTATTCCAAAAA---------ATAACTG--TGAAAGAAAGAAAATTGA-------------TG--AAC------TCAA------TAAGAAATTA----TT-----------A--------------T-----------TCTG----------T-----------------------------A---TCA---------------AACCTG--A-----CAGAACCCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307097 153 - 135371336 ----------------------CATGTAGGAA--TGAGATCCCATAAATGTGGCACAGGAGAAAAAAGTTTGAAATGTCCTT-TTGATTTGCTTATTCCAAAAA---------ATAATTG--TGAAAGAAAGAAAATTGA-------------TG--AAC------TCAA------TAAGAAATTA----TT-----------G--------------T-----------TCTG----------T-----------------------------A---TCA---------------AACCTG--A-----CAGAACCCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337302 152 + 667635 ----------------------CATTTAGGAA--TGAGACTTCATGAATGTGCCTCAGGATAAAAAAGTTTGAAACACCCTT-TTGATTTTCTTATTCTAAAAT---------ATAACTG--TAGCAGAAA-AAATTTGA-------------TG--AGC------TCAG------TAAAAAAATT----TG-----------T--------------T-----------TTTA----------T-----------------------------A---AAA---------------CACCTG--A-----CAATATGTTT i cavPor3.scaffold_248 C 0 C 0 s oryCun2.chrUn0106 741647 142 + 1032594 ----------------------CCTTTAGGAA--TGAGACTCCAGAAATGTGGCACAGGTGAGAAAAGTTTGAAACACCCTT-TTGATTTTCTTGTGCAAAAAA---------ATACCTG--TGGAAGAAACAAACTTTA-------------TG--AGT------TCAG------TAAGAAATTA----TT-----------A--------------C-----------TCTC----------T-----------------------------A---TCA---------------AAACTG------------------ i oryCun2.chrUn0106 C 0 N 0 s bosTau4.chr17 30047773 153 - 76506943 ----------------------CATTTAGGAA--TGAGATCCCATAAATGTGGCACAGGTGAAAAAAGTCTGAAGGATCCTT-TTGATTTTCTTATTCCAAAAA---------GTAACTG--TGAAAGAAAGAAACTTGA-------------TG--AGC------TTAA------TAGGAAATTA----TT-----------A--------------T-----------TTTG----------T-----------------------------A---TTA---------------AACCTG--C-----CAGAACTTAT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3257562 153 + 42029645 ----------------------CATTTAGGAA--TGAGACCCCATAAATGTGGCACAGGTGAAAAAAGTTTGAAACATCCTT-TTGAGTTTCTTATTCCAAAAA---------ATAACCA--TGGAAGAAAAAAGCTTGA-------------TG--AGC------TCAA------TAAGAAATAT----TT-----------A--------------T-----------TCTA----------T-----------------------------A---TCA---------------AAGCTG--A-----TAGAACCCAT i canFam2.chr26 C 0 C 0 s equCab2.chr8 64205720 153 - 94057673 ----------------------CATTTAGGAA--TGAGGCCTCATAAATGTGACACAGGTGAAAAAAGTTTGAAACATCCTT-TTGATTTTCTTATTCCAAAAA---------ATAACTG--TGGAAGAAAGAAACTTGA-------------TG--AGC------TCAA------TAAGAAATCG----TT-----------A--------------G-----------TCTA----------T-----------------------------A---TCA---------------AACCTG--A-----TAGACCCCAC i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 10896 145 + 41182 -------------------------------------------ATAAATTTCATTCATACAGAAAAACCTTTAAACATAATT-TTAATTT-GCTGTTCAATAGCACACATTTTGTCACT------AAGAA---AACTAAA-------------GG--AAT------TAAATGTACCTGAGAAATTA----TT-----------T--------------C-----------TTTG----------T-----------------------------A---CTACCCATGAAAACATTCACCCTG------------------ i echTel1.scaffold_287190 C 0 I 62 s loxAfr3.scaffold_113 153303 142 - 3408981 ----------------------CATTTAGGAG--TGAGAGCCCATAAATATGGCACAGGTGGAAAAAGTTTAAAACATCCTT-TCGATTTAATTATTCCAAAAA---------GTCACTG--TGGAAGAATGCAACTTGA-------------TG--ATT------TCAA------TAAGAAGTTA----TT-----------A--------------T-----------TCCA----------T-----------------------------A---TCA---------------AATCTG------------------ i loxAfr3.scaffold_113 C 0 N 0 s xenTro2.scaffold_677 234746 170 + 553670 ----------------------TGGTTAAACATCTAAGGACCCA---------CACAGGGGAGAGA-----------CCTTT-TTCCTGTACTGAATGTGGGAA---------ATGTTTTGCTGCTTCATCAGAACTCGC-------------TG--TCC-----ATCAA------CAACGAACCC----AC-----------ACAGGGGAGAAACTTT-----------CTTG----------TTCCGAATGCGGGAAACGTTTCTCACGTCGA---TCT---------------AACCTT------------------ i xenTro2.scaffold_677 C 0 I 21 s tetNig2.chrUn_random 56314015 171 + 107808587 ----------------------CACACGGGTC--AGAAGAcctatttgtgtaaaacatgtgggaaagggtTCAAACATAGTT-ATACCCTAACCGTCCACATGA---------GAAGTCA--CACGGGTGAG-------AAACCATACAGTTGTG--AAA------CATG------TGGGAAATCA----TT-----------C--------------A-ATCAGACTTCTGCA----------T-----------------------------TAACTCA---------------a---cacat-----gagagttcac i tetNig2.chrUn_random T 10596 C 0 s fr2.chrUn 297536013 171 + 400509343 ----------------------CACGTAGGTG--TGAAACCATTTGTTTGCAACATATGTGGTAAAGGCTTTATAGAAAAAA-CTAACTTGTCAAGCCATTTGA---------GAATCCA--TACTGGTGAGAAGCCCTA-------catctgta--aaa------catg------tgggaaagca----tt-----------t--------------agattaaaaaaatatt----------t-----------------------------t---tca---------------aac-cACAC-----CCGGatccac i fr2.chrUn I 15 C 0 s gasAcu1.chrUn 58150936 168 + 62550211 ----------------------CTCATAGAAC--TGA-----------GTAAAAATGGGTGGAAAGAAACTTGGAGATCAGACTCAGGTATTCATGTTCCCAAT---------CAAAACT--AAGCAAGGAGAACCTTTCAACCATATGTATGCA--ACA------CCTG------TGGGAAAAGA----TT-----------T--------------G-TGGATAAATCTGTA----------T-----------------------------T---TGA---------------GATTCATAA-----AAGAGTCCAC i gasAcu1.chrUn I 7 n 7 s oryLat2.chr4 18768436 170 + 34636364 -----------------------------------------------GATCAGATCAGTCTGACACTGAGTCAgagaaaatg-ttagaaaaacatgctgttgaa---------aacaatt--taaaggaaataaatctgGAAGAAAATACAAGAATCATA------ACAG------TAGAGAAACA----TTGTTGTAAAGagt--------------g-tagaaaa---tgtt----------t-----------------------------t---aca---------------aatgccaAAAGTTTAAGGCATCAC i oryLat2.chr4 N 0 I 12 s danRer6.chr4 43839972 106 - 71658100 --------------------------------------------------CAGTGTGTGTAGCCAATGTTT------------CCAG--TGTCTTTTCACTTTT---------CATTTTT--TAATGAGA------------------GTATTTA--AGA------CTTA------ATGAAAACTAATGTTT-----------T--------------A-TTTA------TTTA----------T-----------------------------T---TCA---------------GACCCA------------------ i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 10171 193 + 37044 tcttcagagtcaccagagaacacacacaggag--agaaacccttcaagtgcactgtgtgtgagaaggcatttgcagagtcat-ccCATCTTAAAATACatcaga---------gaacgca--cacaggagagaaaccctt-------------ca--agtgcactgtctg------tgagaaggca----tt-----------t--------------g-----------catggttaTCCGgtc-----------------------------t---tca---------------gatccacca-----gagaacacac i petMar1.Contig2426 C 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=658104.000000 s hg19.chrUn_gl000223 179287 294 + 180455 GGTGGGATAAAATACTGTGATTGCAGTA-----------CATGTAGAAAATCCAGCAACGAA----GAGCCATGGCTCAC--------TGCTAATCACATAA---CAC----ACACAGGAG------TCTATTTATGCATGGAATGTGGCAGATTTTTTAAC---AAGAA-----GTCACAACTTGTTATACACCAGAGAACTCATACAGGAGAGAAGCCCTATCAATGCAGTGAGTGTGGAAAAGCCTTTTCACAGAAGTCACTG-CTCACGGTTC--ATCAAAGAACTCACTCAGGAGAAAAACC---GCATGGGTGCAGCGA---------------------------ATGTCAGAAAGCTTTTAGT s rheMac2.chr11 302431 291 - 134511895 TGTGGAATAAAATGCTGTGATTGCAATA-----------CATGTAGAAAACCCAGCAATAAA----GAGCCATGGCTCAC--------TGCTAATCAT---A---CAC----ACACAGGAG------TCTATTTATGCATGGAATGTGGCAGATTTTTTAAC---AAGAA-----GTCACAACTTattattcaccagagaactcatacaggagagaagccctatcagtgcagtgagtgtggaaaagccttctcacagaagtcactg-ctcactattc--atcaaagaactcactcaggagaaaaacc---gtatgggtgcagcga---------------------------atgtcagaaagcttttagt i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 354769 294 - 136387465 GGTGGAATAAAATACTGTGATTGCAATA-----------CATGTAGAAAATCCAGCAACAAA----GAGCCATGGCACAC--------TGCTAATCACGTAA---CAC----ACACAGGAG------TCTATTTATGCATGGAATGTGGCAGATTTTTTAAC---AAGAA-----GTCACAACTTATTATACACCAGAGAACTCATACAGGAGAGAAGCCCTATAAATGCAGTGAGTGTGGAAAAGCCTTTTCACAGAAGTCACTG-CTCACTGTTC--ATCAAAGAACTCACTCAGGAGAAAAACC---ACATGGGTGCAGCGA---------------------------ATGTCAGAAAGCTTTTAGT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307250 294 - 135371336 GGTGGAATAAAATACTGTGATTGCAATA-----------CATGTAGAAAATCCAGCAACAAA----GAGCCATGGCTCAC--------TGCTAATCATATAA---CAC----ACACAGGAG------TCTATTTATGCATGGAATGTGGCAGATTTTTTAAC---AAGAA-----GTCACAACTTGTTATACACCAGAGAACTCATACAGGAGAGAAGCCCTATCAATGCAGTGAGTGTGGAAAAGCCTTTTCACAGAAGTCACTG-CTCACTGTTC--ATCAAAGAACTCACTCAGGAGAAAAACC---GCATGGGTGCAGCGA---------------------------ATGTCAGAAAGCTTTTAGT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337454 288 + 667635 GGTGAAATAAAATACCATTACTTTAATA-----------AATTTAGAAAAACCAGCAGCAAA----GATTCATGGCTTAT--------TTCAAAACATGTAA---CAC----ATATAGGAG------TCTATTTATATATGGAATGTGGCAAAGTTTTTAAT------AA-----GTCACCATTTACTGTGCACCAGAGAACTCACACAGGAGAGAAGCACTACCAGTGCAGTGAATGTGGGAGAGCTCTCTCA---AAGTCCTTG-CTCACTTTTC--ACCACAGGACTCACTCAGGAGAAAAACA---CTATGGGTGTGGGGA---------------------------ATGTCCCAAGGTTTTCAGC i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30047926 294 - 76506943 GGTGGAATAAAATACTCTGATGGCAATA-----------CATGTAGAAAAGTCAGCAGTAAA----GAGCCAGGACTCAT--------TATGAGCCATATAC---CAC----ACACAGGAG------TCTGTTTGTGCATGGAATGTGGCAAGGTTTTTAAT---AAAAA-----GTCACAGCTCATTATACATCAAAGAACTCATACAGGAGAGAAGCCCTATGGATGCCGGGACTGTGGGAAAGCTTTCTCCCAGAAGTCATTG-CTCACTATTC--ATCAAAGGACTCATTCAGGAGAAAAACC---ATATGGGTGTGGGGA---------------------------ATGTCAGAAAGCTTTCAGT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3257715 294 + 42029645 GGTGGAATGGCattctgtggttgcagta-----------aatgtagaaaagctagcagtaca----gggtcgtggcccaa--------tgcaaaccatataa---cac----atacaggag------tccatttatgcatggaatgtggcaacgtttttaat---aagaa-----gtcacagctcattatacatcagcgaactcacacaggagagaagccctatggatgcagtgaatgtgggaaagccttctcacagaagtcattg-ctcactattc--atcaaaggactcattcaggagaaaaacc---atatgggtgtggtga---------------------------atgtcaaaaagctttcagt i canFam2.chr26 C 0 C 0 s equCab2.chr8 64205873 294 - 94057673 AGTGGAATAAAATACCGTGGTTACAGTA-----------AATGTAGAAAAGCCAGCAGGAAG----GAGTCGTGGCTCAT--------TACAAGCCAGATAA---CGC----AGTCAGGAG------TCTGTCTATGCGTGGAATGTGGCAAAACTTTTAGC---AAGAA-----GTCACAGCTCATTGTGCATCAGAGAACTCACACGGGGGAGAAGCCCTACGGCTGCGGCCAGTGCGGGAAGGCCTTCTCCCAGAAGTCATTG-CTCACTATTC--ACCAAAGGACTCATTCAGGAGAAAAACC---ATATGGGTGTGGTGA---------------------------GTGTCAAAAAGCTTTCAGT i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 11103 302 + 41182 AGAGAAATGAAATTTTACAAATGCAGTG-----------AATGTCAGAGATGCTGTAACCAT----GTGTCACAGCTCCT--------TCTACACCAGAAGAATTCAC----ACACGAGAG--AAATCCTTCAGGTGCATTGAATGTAGGAAAAGCTTTTGTGTGGAAAA-----GTCAC--CTCATTTTACACCAGAGAACTCACACAGGAGAGAAACCTTTTGGATGTAATGAATGCGGAAGACTCTTCTCACAGAAATCACAG-CTTATTGTAC--ATCAGAGAACTCACACAGGAGAGAAAAC---TTATGAATGTGGTAA---------------------------CTGTCCCAAAGCTTTTATT i echTel1.scaffold_287190 I 62 C 0 s xenTro2.scaffold_677 234937 300 + 553670 ACAGGGGAGAAGCCATTTCTTTGTTCTG-----------AATGTGGGAAAT---------------GTTTTTCAGCTCACGCTACCCTTGTTTGTCATCTAAAGACAC----ACACAGGAGAGAAGCCATTTCCTTGTTCTGAGTGTGGAAAATGTTTCCAA---AATCA-----GTTTAACCTTGCTAGTCACCGAAGGACTCACACAGGGGAGAAGCCATTTTCTTGTTCTGAATGTGGGAAATGTTTCTTTAATCGCTCTAAC-CTTGCTCGTC--ATCAAAGTAATCACACAGGGGAGAAACC---TTTTTCTTGTTCTGA---------------------------GTGTAAGAAATGTTTTGCC i xenTro2.scaffold_677 I 21 I 5860 s tetNig2.chrUn_random 56314186 300 + 107808587 acaggtgagaaaccctatttgtgtaaaa-----------catgtgagAAAGGGTTCAAAACAAGTTCTGCATTAAAAGTC--------CACATGAGAAATCA---CAC----AGGCGAGAA----ACCATACATCTGTGAAACATGTGGGAAAGCTTTTAAA---CAAAATTCTGAACTAGTT-----GTCCACATGAGAAGTCACACCGGTGAGAAACCCTATAGTTGTGAAACATGTGGGAAATCATTCGTGCAAACCTCCGAA-CTAACCaagc--acatgagagttcacacaggtgagaaacc---ctATATGTGTACAAC---------------------------GTGTGGGGAAGCTTTCAAC i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 297536184 300 + 400509343 acaggtgagaagccaTACAattgtaaaa-----------catgtgggaaagccttcaGACAGAGTAGTAAATTGGCAGAC--------CACATAAagattca---cac----aggtgagaa----gccGTACATTTGCAAAACCTGTGGAAAAGCTTTCATA---CAAAA-----AACAAGTTTGTCAGTCCACCTGAAAGTTCACACAGGCAATAAGCCCCACATTTGCAAGATATGTGGGAAAGCTTTAAGTTCAAAATGGAAT-CTATCATACC--ACGCGAGGgtccacacaggtgagaaacc---aTATATTTGCAAAGT---------------------------ATGTGGAAAAGGTTTAAGC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16775210 246 + 20083130 ----GAGGAAAT--------------AG-----------ACTGTGAACG------TTTTGTG----GTACCAGAACCAAA--------CGACAACAA------------------CAAGGA----GCC--------------------------------------ACAA-----CAGCAGATTC------------TGGCTTCTC-CAGGTGACAGGGCGTTTTTGTGCAAAAAATGTGGAAACCATTTCCAACATGAAAACGACACTCAAGAATCTGATAGACAAGATCAGAAAGGAGTAAAACAAAGTTTAACATCAGACGAGCCACAACAGCAGAGTCTGGCTCCTCCAGGTGACAGGGCATTTTTT i gasAcu1.chrXIII T 30295 C 0 s oryLat2.chr4 18768618 300 + 34636364 acaggagaaaagcctttttcctgtgaag-----------aatgtggAAGAAGTTTTACTGTGAAAAGCACCCTCACTAAG--------CACAAACGagtcca---cac----aggagaaaa----gccctttTCCTGTGTAGAATGTGGAAGAAGTTTTACT---GATAA-----AAGCAGCCTCACTAAGCACAAACGAGTCCACACAGGGGAAAAGCCCctttcctgtgaagaatgtggtaaaagttttacggagaaaagcagc-ctcacTAAGC--ACAAACGagtccacacaggagaaaagcc---tttttcctgtgaaga---------------------------atgtggtaaaagtttTACT i oryLat2.chr4 I 12 C 0 s danRer6.chr4 43840078 306 - 71658100 ATTGAAGAGAAT---GTTGAGAGTAAAGAGGAGGAACATCATGTCAAAA------TTGAGGAAAAAACTCATTTACAGAC--------TGATGGTATTTTGA---AAAGGAGAGACGAGAA----TTGTTTCACCTGCACTCAGTGTGGAAAGAGTTTCAGC---CAATC-----ATCATCCCTTAATCTACACATGATGAGCCACACTGGAGAGAAACCATTTACTTGCACTCAGTGTGGGAAGACTTTTAACTGCTCATCACAC-CTTAATCAAC--ACATGAGGATCCACACTGGAGAGAAACC---ATTCACATGCACTCA---------------------------GTGTGGGAAGAGTTTCAGC i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 10364 300 + 37044 acaggagagaaacctttcaagtgcagtt-----------TGTGTGAAAAGACATTTTCAagt----tcattttgttttaa--------aatgcaccagagaa---cac----acacaggagagaaacccttcaggtgcactctgtgcgggaagccCTTTGCA---gattc-----atcacatcttaaaatacatcagagaacgcacacaggagagaaacctttcaagtgcactgtgtgtgagaaggaatttgcatggtcatcaggt-tttcagatcc--accagagaacgcacacaggagagaaaca---tttcaagtgcactgt---------------------------gtgtgagaaggcatttgca i petMar1.Contig2426 C 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=195393.000000 s hg19.chrUn_gl000223 179581 53 + 180455 AGGAAG----------TCACTCCTCATTTTACATCAGAGAATTCATACTGGAGAGAAGCCGTA s rheMac2.chr11 302722 53 - 134511895 aggaag----------tcactcctcattttacatcagagaattcatactggagagaagccgta i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 355063 53 - 136387465 AGGAAG----------TCACTCCTCATTTTACATCAGAGAATTCATACTGGAGAGAAGCCGTA i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307544 53 - 135371336 AGGAAG----------TCACTCCTCATTTTACATCAGAGAATTCATACTGGAGAGAAGCCGTA i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 337742 53 + 667635 CAGAAG----------TCACTGCTCATTCTGCATAAGAGAACTCATACTGGAGAGAGGCCCTA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30048220 53 - 76506943 AGGAAA----------TCACTGCTCATTTTACATCAGAGAACTCACACAGGAGAGAAGCCCTA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3258009 53 + 42029645 aggaag----------tcactgcttattttacaccagaggactcacacaggagagaagccata i canFam2.chr26 C 0 C 0 s equCab2.chr8 64206167 53 - 94057673 AGGAAG----------TCACTGCTCGTTTTACATCAGAGGACTCACACGGGAGAGAAGCCCTA i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 11405 53 + 41182 CGGAAG----------GCCGACCTTATTTTACACCAGCGAACTCACACAGGAGAGAAACCGTA i echTel1.scaffold_287190 C 0 C 0 s xenTro2.scaffold_677 241097 53 + 553670 AGCCAT----------TCACACCTTGCTCGTCATCAAAGGACTCACACAGGGGAGAAACCATT i xenTro2.scaffold_677 I 5860 C 0 s tetNig2.chrUn_random 56314486 53 + 107808587 CGCAGT----------TCTACATTAATTGTCCACATGAGAAGACACACGGGGGAGAAACCACA i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 297536484 53 + 400509343 TGTAAT----------TCAAATTTATCCCAACACATGAGACTTCATGCAAGTGAGAAgtcata i fr2.chrUn C 0 I 4549 s gasAcu1.chrXIII 16775456 59 + 20083130 GGCAAAACACATAATGAACATTTTC----AACATAAAAAACTTCACTGGATGGATCAACAGTA i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr4 18768918 53 + 34636364 GATAAA----------AGCAGCCTCACTAAGCACAAACGAGTCCACACAGGAGACAAGCCCTT i oryLat2.chr4 C 0 C 0 s danRer6.chr4 43840384 53 - 71658100 CAATCA----------TCAAACCTTAATCTACACATGAGGATCCACACTGGAGAGAAACCATT i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 10664 53 + 37044 tggtca----------tcaggtcttcagatccacgagagaacacacacagcagagaaaccttt i petMar1.Contig2426 C 0 C 0 e tarSyr1.scaffold_38559 7634 0 - 15879 I a score=839092.000000 s hg19.chrUn_gl000223 179634 204 + 180455 TGGATGCAG-----TGAATGTGGAAAAGCCTTCAGTAGGAAGTCGCAGCT-----TAAAAGACATCAG-ATAACGCACACAATAGAGAAACCCTACAGTTGCAGTGAGTGTGGGAAAGCATTCTCCCAGAAATTAAAACTCATCACACATCAGAGAGCGCACACAGGAGAGAAACCCTATCCATGTAGTCACTGTGGAAAAGCCTTCTT-TTGGAA s panTro2.chr12 307597 204 - 135371336 TGGATGCAG-----TGAATGTGGAAAAGCCTTCAGTAGGAAGTCGCAGCT-----TAAAAGACATCAG-ATAACTCACACAATAGAGAAACCCTACAGTTGCAGTGAGTGTGGGAAAGCATTCTCCCAGAAATTAAAACTCATCACACATCAGAGAACGCACACAGGAGAGAAACCGTATACATGTAGTCACTGTGGAAAAGCCTTCTT-TTGGAA i panTro2.chr12 C 0 C 0 s ponAbe2.chr12 355116 204 - 136387465 TGGATGCAG-----TGAATGTGGAAAAGCCTTCAGTAGGAAGTCGCAGCT-----TAAAAGACATCAG-ATAACTCACACAATAGAGAAACCCTACAGTTGCAGTGAGTGTGGGAAAGCATTCTCCCAGAAATTAAAACTCATCACACATCAGAGAACGCACACAGGAGAGAAACCCTATACATGTAGTCACTGTGGAAAAGCCTTCTT-TTGGAA i ponAbe2.chr12 C 0 C 0 s rheMac2.chr11 302775 204 - 134511895 tggatgcag-----tgaatgtggaaaagccttcagtaggaagtcGCAGCT-----TAAAAGACATCAG-ATAACTCACACAATAGAGAAACCCTACAGTTGCAGTGAGTGCGGGAAAGCATTCTCGCAGAAATTAAAACTCATCACACATCAGAGAACGCACACAGGAGAGAAACCCTATACGTGTAGTCACTGTGGAAAATCCTTCTT-TTGGAA i rheMac2.chr11 C 0 C 0 s tarSyr1.scaffold_125068 5871 206 + 6413 --AATGCAGAGGTTTGAAGGCCAAAAAGATCTTTGTAATAA-TAGAAGTG-----GGAAGGAAAACAGTGTGACGGACG-AGTGGTGAGTTCCTGTAGTTGCAGTGACTGTGAGAAAGCTGTCTCCCAGAAATGAAAGCTCATTACACATTAGAAAACGCATAAAGGAGAGAAGCCCTGTAAATGTAGTAACTCTGCAAAAGATATCTT-TTGGAA i tarSyr1.scaffold_125068 I 55 N 0 s cavPor3.scaffold_248 337795 209 + 667635 TGCATACAG-----TGAATGTGAGAAAGCCTTCGGCAGAAAATCTCAGACATCAGGTAAAGACATCAG-GTCATTCACACAGTAGAGAAGCCCTATGACTGCAGAGACTGTGGGAAAGCTTTCTGCCAGAAATTGAAACTCATCACACATCAAAGAATTCATACAGGAGAGAAACCCTATAAATGTGATGACTGTGAAAAGGCTTTCTT-TTGGAA i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30048273 204 - 76506943 TGGCTGCAG-----TGACTGTGGGAAAGCCTTCAGCAGGAAGTCACAGCT-----TAAAAGACATCAG-ATAACCCATACAATAGAGAAGCCCTATGGCTGCAGTGACTGTGGGAAAGTCTTCTCCCAGAAATTAAAGCTCATTACACATCAGAGGACACACACAGGCGAGAAGCCCTACAGATGTAGTGATTGTGGAAAAGCCTTCTT-TTGGAA i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3258062 204 + 42029645 tggatgcag-----tgaatgtgggaaagccttcagcaggaagtcacaact-----taaaagacatcag-aggactcacacagtagagaagccctatggctgcagtgactgcgggaaagccttctcccagaaattaaagctcattacacatcagagaacacacacaggagagaagccctatcaatgtagtgactgtgggaaagccttctt-ctggaa i canFam2.chr26 C 0 C 0 s equCab2.chr8 64206220 204 - 94057673 CAGCTGCCG-----CGAATGTGGGAAGGCCTTCAGCAGGAAGTCCCAGCT-----TAAAAGACATCAG-AGAACTCACACAGTAGAGAAGCCCTACGGCTGCAGTGACTGTGGGAAAGCCTTCTCTCAGAAGCTAAAGCTCATCTCCCATCAGAGAATGCACACGGGAGAGAAACCCTATAAGTGTGGTGATTGTGGGAAAGCCTTCTT-TTGGAA i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 11458 204 + 41182 TGAGTGCCG-----AGAATGTCAAAAAGCCTTTAGTAGTAAGTCTCAACT-----CACTATACACCAG-AGACGTCATACAGGAGAGAAACCCTATGAGTGCAGCGAATGTGGGAGAACGTTCCCCCATAAATCCAGTCTAATTTTACATCGGAGAACTCACACAAGAGAAAAACCCTATAAATGCAATGCCTGCCAGAAAACCTTCAT-CAGTAG i echTel1.scaffold_287190 C 0 C 0 s xenTro2.scaffold_677 241150 200 + 553670 CTCTTGTTC-----TGAATGTGGGAAATGTTTTGCAAGCAAATCTGACCT-----TAAAGGCCATCAA-ATAACCCACACAGGGGAGAAACCATTTTCTTGTTCTGAATGTGGTAAATGTTTTTCAAAGCAATCTAACCTTGCTTGTCACCAAAGAACTCACACAGGGGAGAAACCTTTTTCTTGTTCTGAATGTGGGAAATGTTTTTT-----AA i xenTro2.scaffold_677 C 0 I 4 s tetNig2.chrUn_random 56314539 204 + 107808587 Tgtttgtaa-----aacatgtggggcAGCTTTCAAACAACGGTCGGCCTT-----AATTGTCCACATG-AGAAGACACACAGGCGAGAAACCCTActcttgtaaaacatgtgggaagTCATTCATCCAAACCTGTGCGTtaactgagcacatgagagttcacacaggggAGAAACcctatttgtgtaaaacatgtgggaaagccTACAA-ACAAAG i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 297541086 204 + 400509343 TAGTTGTGC-----AACATGCGGAAAAGctttcaaagaaaatgaggagTT-----ATCGCGACACACA-AGAATCCACACTGGTGAGAAGCAATATGTTTGCACCACATGTAGGAAAGCTTTCAAACGCAGCTATGAATTATCGCGACACATGAGAATCCATACAGGTGACAAACCGTATGTTTGCAACACCTGTGGGAAAGCTTTTAC-ACAAAG i fr2.chrUn I 4549 C 0 s gasAcu1.chrXIII 16775515 204 + 20083130 TGTATGCAA-----CATCTGTGGGAGAAGATTCACTGATAACTCAAATTT-----GAAGGCTCATATA-AAAATCCATTCTGGGGAGAAGCCATATTCCTGCATCACTTGTGGGAAAACATTCACTGATAAATCAAATTTGAAGGCTCATATAAGAATTCATACTGGGGAGAAGCCATATTCATGCATCACCTGTGGGAAAACATTCAC-TCGCAA i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr4 18768971 205 + 34636364 TTCCTGTGT-----AGAATGTGGAAGAAATTTTACTGATAAAAGCAGCCT-----CACTAAGCACAAA-CGagtccacacaggagaaaagcctttttcctgtgaagaatgtggtaaaagtttTATGGAGAAAAGCAAACTCACTAAGCACAAACGagtccacacaggagaaaagcctttttcctgtgaagaatgtggtaaaagtttTATGGAGAAA i oryLat2.chr4 C 0 C 0 s danRer6.chr4 43840437 204 - 71658100 CCAATGTAC-----CCAGTGTGGGAAGAGTTTCAGCCACTCATCATCCCT-----TAATCAACACATG-AGGATCCACACTGGAGAAAAAACATTCACATGCTCTCAGTGTGGGAAGAGTTTTAACTGCTTATCACTCCTTAATAAACACATGAAGATCCACACTGGAGAGAAACCATTCACATGCACTCAGTGTGGGAAGAGTTTTAG-CCAATC i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 10717 204 + 37044 caagtgcag-----ttTGTGTGGTAAGGTATTTTCAGGTTCATTGCCTCT-----TAaacggcaccag-agaacacacatgggagagGAACCCTTCAGGTGCCTCTTGTGCGATAAAGCGTTTGCAAAGTCATCAGATCTTCAAAAACACCAAAGAACACACAGAGGAGAGAAAcacttcaagtgcactgtgtgtggaaaggtGTTCAC-ACGGTC i petMar1.Contig2426 C 0 C 0 a score=225796.000000 s hg19.chrUn_gl000223 179838 59 + 180455 GTCGCAGC---TGATTACTCATCAGAGGACCCACACAGGGAAGAAACCTTACGGATGTGGTG s rheMac2.chr11 302979 59 - 134511895 GTCGCAGC---TTATTACTCATCAGAGGACCCACACAGGGAAGAAACCTTATGCATGTAGTG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 355320 59 - 136387465 GTCGCAGC---TTATTACTCATCAGAGGACCCACACAGGGAAGAAACCTTATGCATGTAGTG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307801 59 - 135371336 GTCGCAGC---TTATTACTCATCAGAGGACCCACACAGGGAAGAAACCTTACGCATGTAGTG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 338004 59 + 667635 GTCACAGT---TGATTACTCATCATAGGTCTCATACAGGAAAGAAACCTTATACATGTAATG i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30048477 59 - 76506943 GTCACAGC---TTATAACTCATCAGAGGGTTCATACAGGGAAGAAGCCGTATGCCTGTAGTG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3258266 59 + 42029645 gtcacagc---tgattactcatcagaggactcacacagggaagaaaccatatgcatgtaatg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64206424 59 - 94057673 GTCGCAGC---TTATTACTCATCAGAGGACTCACACGGGGAAGAAACCCTATGCATGTAGTG i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 11662 59 + 41182 GGCGCATC---TCATTAAACATGAGAAAACTCACACAGGCGAGAAACCCTATGGATGTGATG i echTel1.scaffold_287190 C 0 I 255 s xenTro2.scaffold_677 241354 59 + 553670 TTCACACC---TTGATCGTCATCAAAGGACTCACACAGGGGAGAAACCATTCTCTTGTTCTG i xenTro2.scaffold_677 I 4 C 0 s tetNig2.chrUn_random 56314743 45 + 107808587 TTCTGCAT---TGCATGTCCACATGAGAGGTCACACAGGCGAGGAGCC-------------- i tetNig2.chrUn_random C 0 I 4770 s fr2.chrUn 297541290 59 + 400509343 CACTGACT---TGTCACACCACATGAGAATCCATACAGGTGAAAAGCCCTATATTTGCACca i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16775719 59 + 20083130 ATCACATT---TGAGGTCTCATACAAGAATCCATACCGGGGAGAAGCCATATCCCTGTAAAA i gasAcu1.chrXIII C 0 C 0 s oryLat2.chr4 18769176 58 + 34636364 AGCAAACTCACTAAG----CACAAACGagtccacacaggagaaaagcctttttcctgtgaag i oryLat2.chr4 C 0 C 0 s danRer6.chr4 43840641 59 - 71658100 AACCTCCC---TTAATCAACACATGAGAATCCACACTGGAGAAAAACCATTCTCATGCACTC i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 10921 59 + 37044 ATCATATC---TTCAAAGGCACCAGAgatcacacacaggagagaaacccttcaagtgcagtg i petMar1.Contig2426 C 0 C 0 a score=341901.000000 s hg19.chrUn_gl000223 179897 88 + 180455 AGTGTCAAAAA-GCCTTCAGCAGGAACTCACTTCTCATTAGGCATCAGAGG---ATTCATACAGGAGAGAAGCCCTACGAATGCAACGAATG s rheMac2.chr11 303038 88 - 134511895 AGTGTCAAAAA-GCCTTCAGCAGGAACTCACTTCTCATTAGGCATCAGAGG---ATTCATACAGGAGAGAAGCCCTACGAATGCAATGAATG i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 355379 88 - 136387465 AGTGTCAAAAA-GCCTTCAGCAGGAACTCACTTCTCATTAGGCATCAGAGG---ATTCATACAGGAGAGAAGCCCTACGAATGCAACGAATG i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307860 88 - 135371336 AGTGTCAAAAA-GCCTTCAGCAGGAACTCACTTCTCATTAGGCATCAGAGG---ATTCATACAGGAGAGAAGCCCTACGAATGCAACGAATG i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 338063 88 + 667635 AGTGTAAAAAA-GCCTTCAGCAGGAATTCACTCCTCATTCGGCATCAGACG---ATTCACACAGGAGAGAAACCTTGTAAGTGCAATGAATG i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30048536 88 - 76506943 AATGTAAAAAA-GCCTTCAGCAGGAACTCACTCCTCATTAGGCATCAGAGG---ATCCATACAGGAGAGAAACCCTATGAATGCAGTGAATG i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3258325 88 + 42029645 agtgtacaaaa-gcgttcagcaggaactcactgctcatcaggcatcagagg---atccacacaggagagaagccctatgagtgcagtgagtg i canFam2.chr26 C 0 C 0 s equCab2.chr8 64206483 88 - 94057673 AGTGTGAAAAA-GCCTTCAGCAGGAACTCGCTCCTCATTAGGCATCAGAGG---ATCCACACAGGAGAGAAGCCCTATGAGTGCAGGGAGTG i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 11976 88 + 41182 AATGTCAGAAG-GCTTTCATGAGACAGTCAGAACTCATTTTACATCAGAGG---ATACATACAGGAGAGAAACCTTATGAGTGCAATCAATG i echTel1.scaffold_287190 I 255 C 0 s xenTro2.scaffold_677 241413 89 + 553670 AATGTGGGAAATGTTTTTCAAAGCAAATCACAACTTAAAATTCATTAAAGA---ACCCACACAGGGGAGAAACCATTTTCTTGTTCTGAATG i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 56319558 88 + 107808587 catgtgggaaa-gcgTTCAAACACAGTTCCACATTAGTTGTCCACATGAGG---AGTCACACAGGGGAGAGGCCGTACAGTTGCAAAATCTG i tetNig2.chrUn_random I 4770 C 0 s fr2.chrUn 297541349 88 + 400509343 catgtggaaaa-gccttcaaacaaagcAATGCATTGTCAAGACATGTGAGG---gtccacacaggtgagaagccTTACATTTGCAACACATG i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16775778 89 + 20083130 TATGTGAAAGA-TGTTTCAGAAATTCTAGTAACTTAATTGGCCACATAAGAAATGTCCACAAGTGTGAAACGTTGTAGA--TGCAACTCCTG i gasAcu1.chrXIII C 0 I 5741 s oryLat2.chr4 18769234 79 + 34636364 aatgtggtaaa-agtttTATGGAGAAAAGCAAACTCACTAAGCACAAACGa---gtccacacaggagaaaagcc---------cttttcctg i oryLat2.chr4 C 0 I 9 s danRer6.chr4 43840700 88 - 71658100 AGTGTGGGAAG-AGTTTTAGGCAATCATCCTCTCTTAATCAACACATGAAG---ATCCACACTGGAGAGAAACCATTTACTTGCACTCAGTG i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 10980 88 + 37044 tgtgtgggaag-gcattttcagatgaatcacatcttaaaaaacaccatagA---ACACACACCGGAGAGAAACCTtgcaagtgctgtgtgtg i petMar1.Contig2426 C 0 C 0 a score=1236142.000000 s hg19.chrUn_gl000223 179985 376 + 180455 TGGTGAAGCCTTCAT-----------------CAGAAAACCACAGCTG---------------ATTAAACAT-------------------CAGATAACTCACACAGGAGAGAAGAACTAT---CGATGCAGTGAT-------------------------------------TGTGAGGAGGCCTTCTTTA-AGAAGTCAGAGTTAATAAGACATCAAAAAATTCACTTAGGAGAGAAACCATATGGATGCATTCAATGTGGGAAAACCTTCTTTGGGAAGTCCCAGCTCCTAACGCATCACAGAACACACACTGGGGAGAAGCCTTATGAATGCAGTGAGTGTGGGAAGGCCTTCACCCAGAAGTCAAGCCTGATATCACATCAGAGAACACATACAGGTGAGAAACC---------CTAT---------------------------------------GAATGCA------------------------------------------------------------------------GTGAA------------------------TGCAGG-AAAACCTTCAGTGAGAAGTCAAGTCTCATTCATCAT s rheMac2.chr11 303126 376 - 134511895 TGGTGAAGCCTTCAT-----------------CAGAAAACCACAGCTG---------------ATTAAACAT-------------------CAGATAACTCACACAGGAGAGAAGAACTAT---CGATGCAGTGAT-------------------------------------TGTGAAGAGGCCTTCTTTA-AGAAGTCAGAGTTAATAAGACATCAAAAAATTCACTTAGGAGAGAAACCATATGGATGCATTCAATGTGGGAAAACCTTCTTTGGGAAGTCCCAGCTCCTAACGcatcacagaacacacactggggagaagccttatgaatgcagtgagtgtgggaaagccttcacccagaagtcaagcctgatatcacatcagagaacacatacaggtgagaaacc---------ctat---------------------------------------gaatgca------------------------------------------------------------------------gtgaa------------------------tgcagg-aaaaccttcagtgagaagtcaagtctcattcatcat i rheMac2.chr11 C 0 C 0 s ponAbe2.chr12 355467 376 - 136387465 TGGTGAAGCCTTCAT-----------------CAGAAAACCACAGCTG---------------ATTAAACAT-------------------CAGATAACTCACACAGGAGAGAAGAACTAT---CGATGCAGTGAT-------------------------------------TGTGAAGAGGCCTTCTTTA-AGAAGTCAGAGTTAATAAGACATCAAAAAATTCACTTAGGAGAGAAACCATATGGATGCATTCAATGTGGGAAAACCTTCTTTGGGAAGTCCCAGCTCCTAACGCATCACAGAACACACACTGGGGAGAAGCCTTATGAATGCAGTGAGTGTGGGAAGGCCTTCACCCAGAAGTCAAGCCTGATATCACATCAGAGAACACATACAGGTGAGAAACC---------CTAT---------------------------------------GAATGTA------------------------------------------------------------------------GTGAA------------------------TGCAGG-AAAACCTTCAGTGAGAAGTCAAGTCTCATTCATCAT i ponAbe2.chr12 C 0 C 0 s panTro2.chr12 307948 376 - 135371336 TGGTGAAGCCTTCAT-----------------CAGAAAACCACAGCTG---------------ATTAAACAT-------------------CAGATAACTCACACAGGAGAGAAGAACTAT---CGATGCAGTGAT-------------------------------------TGTGAAGAGGCCTTCTTTA-AGAAGTCAGAGTTAATAAGACATCAAAAAATTCACTTAGGAGAGAAACCATATGGATGCATTCAATGTGGGAAAACCTTCTTTGGGAAGTCCCAGCTCCTAACACATCACAGAACACACACTGGGGAGAAGCCTTATGAATGCAGTGAGTGTGGGAAGGCCTTCACCCAGAAGTCAAGCCTGATATCACATCAGAGAACACATACAGGTGAGAAACC---------CTAT---------------------------------------GAATGCA------------------------------------------------------------------------GTGAA------------------------TGCAGG-AAAACCTTCAGTGAGAAGTCAAGTCTCATTCATCAT i panTro2.chr12 C 0 C 0 s cavPor3.scaffold_248 338151 376 + 667635 TGGTGAAGCTTTCAT-----------------TAGAAAGCCACAGCTT---------------GTCAAACAT-------------------CAGGTAACCCCCACTGGGGAGAGGAATCAC---CAATGCAATGAT-------------------------------------TGTGAAGAAGCCTTATTCA-AGAGGTCACAACTAATGATACATCAAAAACTTCACTTAGGAGGAAAACCTTATGGGTTTGTGGACTGTGGAAAAACCTTCTTTGGGAAATCACAGCTTCTCAAAAATCAGAGAACTCATACTGGGGAGAGGTCTTATGAAAGCAGTGAATGCGGGAAAGCCTTTACCAAGAAATCAAGCCTGATCTCACACCAGAGAACACACACAGGTGAGAAGTC---------CTAT---------------------------------------GAATGCA------------------------------------------------------------------------ATGAG------------------------TGTAGG-AAAACTTTCAGTGAGAAATCCAGTCTCATTCTTCAC i cavPor3.scaffold_248 C 0 C 0 s bosTau4.chr17 30048624 376 - 76506943 TGGTGAAGCCTTCAT-----------------CAGAAAACCACAACTT---------------GTTAAACAT-------------------CAAATGACTCATACGGGAGAGAAGAACTAT---CAGTGCAGTAAT-------------------------------------TGTGAGGAAGCCTTCTTTA-AGAAGTCAGAACTAATTAAACATCAAAAGGTTCATTTAGGAGAAAGACCCTATGGATGTGTTGAATGTGGAAAAACCTTCTTTGGAAAGTCACAGCTCCTGACACATCAAAGAACTCACACTGGAGAGAAACCTTATGAATGTAGTGCCTGTGGGAAAGCCTTCACCCAGAAGTCCAGCCTGGTGTCCCATCAGAGGACACATACAGGGGAGAAACC---------TTAT---------------------------------------GAATGCA------------------------------------------------------------------------GTGAA------------------------TGTGGG-AAAACCTTCAGTGAGAAGTCAAGTCTCATTCACCAT i bosTau4.chr17 C 0 C 0 s canFam2.chr26 3258413 376 + 42029645 tggggaagccttcat-----------------caggaaaccacaactt---------------ctcaagcat-------------------caaattactcacacaggagagaagaactat---cagtgcaatgat-------------------------------------tgtgaggaagcattcttta-agaagtcagagctgatcagacatcaaaaaactcacttaggggagaaaccctatgggtgtgttgaatgcggaaaaaccttctttgggaagtcacagctgctaacacatcagagaactcacactggagagaaaccatatgattgcagtgagtgtgggaaagccttcacccagaagtccagcctgatatcacaccagaggacacacacaggggagaaacc---------ctat---------------------------------------gagtgca------------------------------------------------------------------------ctgaa------------------------tgtggg-aaaaccttcagtgagaagtcaagccttattcatcac i canFam2.chr26 C 0 C 0 s equCab2.chr8 64206571 376 - 94057673 TGGAGAAGCCTTCAT-----------------CAGAAAACCACAGCTC---------------GTTAAACAC-------------------CAAATAACTCACACAGGAGAGAGGAACCAT---CACTGCGGCGAT-------------------------------------TGCGACGAGGCCTTCTTCA-AGAAGTCGGAGCTGATCAGACATCAGAAAACCCATCTGGGAGAGAAACCCTATGGATGTGTTGAGTGTGGGAAAACTTTCTTTGGGAAGTCACAGCTCCTAACACATCAAAGAACTCACACTGGAGAGAAGCCTTATGAATGCAGTGAGTGTGGGAAGGCCTTCACGCAGCGGTCAAGCCTGATGTCCCATCAGAGGACACACACAGGGGAGAAGCC---------CTAT---------------------------------------GAGTGCA------------------------------------------------------------------------GTGAG------------------------TGTGGA-AAAGCCTTCAGCGAGAAGTCAAGCCTCATCCACCAT i equCab2.chr8 C 0 C 0 s echTel1.scaffold_287190 12064 376 + 41182 CCAGAAAGCCTTCAG-----------------AACAAAGTCCCAACTC---------------AACATACAC-------------------CAGAGGACACACACAGGAGAGAAGCCCTAC---AGATGCACTGAC-------------------------------------TGTGGGAAAGTCTTCACAC-AGAAGTCGCAGCTTGTTGTGCATCAGAGAACTCACACAGGAGAGAAACCGTATGAATGCAGCCAGTGTCAGAAAGCCTTTAGCACCAAGTCCCTACTCACCATACACCAGAGAACTCACACAGGAGAGAAGCCCTACAGATGCAGTGACTGTGGGAAAGTCTTCACACAGAAGTCGCAGCTTGTTGCGCATCAGAGAACGCACACAGGAGAGAAACC---------ATAT---------------------------------------GAATGCG------------------------------------------------------------------------GTGAT------------------------TGTCAG-AAAGCTTTCAGCCGTAAGTCACCCCTCATTATACAC i echTel1.scaffold_287190 C 0 C 0 s xenTro2.scaffold_677 241502 458 + 553670 TGGCAAATGTTTTTC-----------------AAATCAATCTGACCTT---------------GATCGTCAC-------------------CAGAGAACCCACACAGGGGAGAAACCATTT---TCTTGTTCTGAA-------------------------------------TGTGGCAAATGTTTTTCAATAGCAATCTAACCTTAATAATCATCATAGAAGCCACACAGGGGAGAAACCATTCTCTTGTTCTGAATGTGGGAAATGTTTTTCAAAGCAATCCCAACTTAAAATTCATCAAAGAACCCACACAGGGGAGAAACCATTTTCTTGTTCTGAATGTGGCAAATGTTTTTCAAATCAATCTGACCTTGATCGTCATCAGAGAACCCACACAGGGGAGAAACCATTTTCTTGTTCT---------------------------------------GAATGTGGCAAATGTTTTTCAAACCAATGCTACCTTAAAAATCATCATAGAAGCCACACAGGGGAGGCACCATTTACTTGTGAA------------------------TGTGGG-AAATGTTTTTCAAATCAATCCCACCTTGTTTGTCAT i xenTro2.scaffold_677 C 0 C 0 s tetNig2.chrUn_random 56319646 376 + 107808587 TGGGAAAGCGTTCTC-----------------CACCACCGATGCCCTG---------------ACCAAACAC-------------------AGGAGGattcacacaggtgagagaccTTAC---ACATGTGAAACC-------------------------------------TGTGGAAATGCATTCAGTC-ATAAGTCTGCATTGACTCGGCACAttagagttcacacaggtgagaaaccctTCAGCTGTCAAACATGTGGGAAATCCTTCAATCAGACCTCTGCGCTCACCAAGCACCTGCgcgttcacacaggtgagaaaccgtACGTCTGTAAAATATGTGGGGACAGCTTCAGACAGAGTTCTGCTCTGAGCGTCCACATGAGGAGACACACGGGCGAGAAGCG---------CTAC---------------------------------------TTCTGTA------------------------------------------------------------------------AGACC------------------------TGTGGGAAAGCGTTCAAGCAC-AGTTACACGCTAACGCTCCAC i tetNig2.chrUn_random C 0 C 0 s fr2.chrUn 297541437 376 + 400509343 TGGAAAAGATTTCAG-----------------ACAAAGTGCAAATTTG---------------TCCagccac-------------------atgagaattcacaccGGTGAGAAGCCGCAT---atctgtaaaaca-------------------------------------tgtggaaaagagTTCAGAC-TGAAAAAGAATTTGTCAAGCCACATGAGAatccacacaggtgagaagccTTATATTTGCAAGActtgtggaaaagccttcagacAAAGCAGTAAATTGTCAGATCATTTAAAAATCCACACAGGTGAAAAGCCATACATTTGTAACGCATGCGGGAAAACTTTCAGACTTCGAAATAACTTGACAGAACATATGAAAGTCCATACAGGTAAGAAGCC---------ATAT---------------------------------------GGTTGCA------------------------------------------------------------------------AAATA------------------------TGTGGG-AAGAATTTAAGTTCAAACCGGAATTTGTCACACCAC i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 16781608 467 + 20083130 TGGTACCAGAACCAAACGACAACAACAAGGAGCCACAACAGCAGATTCTGGCTCCTCCAGGTGACAAGACATTTTTGTGCAAAACACATGGAAACTATTCCAAACACAACAGAAACTTGTTGGCCCACGTGAAAAGATTCTACATTGTTGACCAACCATACGTATGCAACACCTGTGGGAAAAGATTTGTGG-ATGAATCTGTATTTGAGAATCATAAAAGAGTCCACAGTGATAAGAAACCATTTTCTTGTCAAATATGTGGAAAAGATTTCAAATTTAGTAATAACTTAAAAGTTCACATGCTAATCCACACTGGGGAAAGGCCGTTTTCTTGTAGCACCTGTGGGAAAACATTCACTCAGAAATCACATTTAAAGGCTCATTTAAGAATTCATTCTGGGGAGAAGCC---------ATAT---------------------------------------TCCTGCA------------------------------------------------------------------------TCAGC------------------------TGTGGG-AAAACATTCCGTACTAAATCACATTTGAAGTATCAT i gasAcu1.chrXIII I 5741 N 0 s oryLat2.chr4 18769322 376 + 34636364 tggtaaaagttttac-----------------tcagaaaagcaaCCTC---------------ACTAAGCAC-------------------AAACGagtccacacaggagaaaagcctttt---tcctgtgaagaa-------------------------------------tgtggtaaaagtttTATGG-AGAAAAGCAAACTCACTAAGCACAAACGagtccacacaggagaaaagcccttttcctgtgaagaatgtggtaaaagttttactcagaaaagcaaCCTCACTAAGCACAAACGagtccacacaggagaaaagcctttttcctgtgaaaaatgtggtaaaagttTCCCTCTGAGACAAACCTTAGATGTTCACATCAGAAtacatacaggagaaaagcc---------tttt---------------------------------------ctttgtg------------------------------------------------------------------------cagaa------------------------tgtggt-aaaagtttTACTGAGAAAAGCAACCTCACTCAGCAC i oryLat2.chr4 I 9 C 0 s danRer6.chr4 43840788 436 - 71658100 TGGGAAGAGTTTTAA-----------------CTGCAAACCACACCTT---------------AATCAACAC-------------------ACGAGAATCCACTCTGGAGAGAAACCATTT---ACATGCACTCAG-------------------------------------TGTGGGAAGAGTTTCAGCC-AATCATCAAACCTTAATCTACATATGATAAACCACACTGGAGAGAAACCATTTACTTGCACTCAGTGTGGGAAGAGTTTTAACTTCTTATCACACCTTAATTTACACATGAGGATCCACACTGGAGAGAAACCATTCACATGCACTCAGTGTGGGAGGAGTTTCAGCCACTCATCATCCCTTAATCGACACATGATGAGACACACCAGAGATAAACC---------ATTTatgtctaatcatgttgtttaatcccaccccttttcacagcgttgta------------------------------------------------------------------------caacagaattttgcatgctcaaactctagtgtgGG-ATGAGTTTCAGCAACTTATCAGACCTTAAACAC--- i danRer6.chr4 C 0 C 0 s petMar1.Contig2426 11068 376 + 37044 tgggaaggcattttc-----------------agattcatcaaatctt---------------aaaatacac-------------------cagagaacacacacaggagtgaaacccttc---aaatgcagtgtg-------------------------------------tgtgggaaggcattttcat-tttcattttatcttaaaatacaccagagaacacacacaggagagaaacccttcaggtgcactctgtgcgggaaggagtttgcacagtcatcttatcttaaaaaacaccatagaacacacacaggggagaaacatttcaagtgcactgtgtgtgagaaggcattttcacagtcatcaaatcttaaaaaacaccatagAACACACACAGTAGAGAATca---------tttc---------------------------------------aagtgca------------------------------------------------------------------------ctgtg------------------------tgtgag-aaggcatttgcacagtcatcagttcttcagagccat i petMar1.Contig2426 C 0 C 0 a score=308405.000000 s hg19.chrUn_gl000223 180361 94 + 180455 C-AGAGAACCCATACTGGAGAAAAG-CCCTTTGAATGTAGTGAATGTAGGAAAGCTTTTGCCTGGAAGCCACAGCTTCTTAGGCATCAGAGAATTC s rheMac2.chr11 303502 94 - 134511895 c-agagaactcatactggagaaaag-ccctttgaatgtagtgaatgtaggaaagcttttgcctggaagccacagcttcttaggcatcagagaattc i rheMac2.chr11 C 0 N 0 s ponAbe2.chr12 355843 94 - 136387465 C-AGAGAACCCATACTGGAGAAAAG-CCTTTTGAATGTAGTGAATGTAGGAAAGCTTTTGCCTGGAAGCCACAGCTTCTTAGGCATCAGAGAATTC i ponAbe2.chr12 C 0 N 0 s panTro2.chr12 308324 94 - 135371336 C-AGAGAACCCATACTGGAGAAAAG-CCCTTTGAATGTAGTGAATGTAGGAAAGCTTTTGCCTGGAAGCCACAGCTTCTTAGGCATCAGAGAATTC i panTro2.chr12 C 0 N 0 s cavPor3.scaffold_248 338527 95 + 667635 CAAGAGGACCCATACTGGGGAAAAG-CCCTTTGAATGTAGTGACTTCAGGAAAGCTTTTACCTGGAAGCAACAGCTCCTGAGGCATCAGAGAATTC i cavPor3.scaffold_248 C 0 N 0 s bosTau4.chr17 30049000 94 - 76506943 C-AGAGAACCCATACTGGAGAAAAA-CCCTTCGAATGTGGTGAGTGTAGGAAAGCTTTTGCCTGGAAGCCACAGCTTCTTAGGCACCAGAGAATTC i bosTau4.chr17 C 0 N 0 s canFam2.chr26 3258789 94 + 42029645 c-agagaacccataccggagagaaa-ccctttgaatgtggtgaatgtaggaaagcatttgcctggaagccacagcttcttaggcatcagagaattc i canFam2.chr26 C 0 N 0 s equCab2.chr8 64206947 94 - 94057673 C-AGAGAACCCACACTGGAGAAAAA-CCCTTTGAGTGTGGTGAATGTAGGAAAGCTTTTGCCTGGAAGCCACAACTTCTGAGGCATCAGAGAATTC i equCab2.chr8 C 0 N 0 s echTel1.scaffold_287190 12440 94 + 41182 C-AGAGAACCCACACGGGAGAAAAC-CCCTATGTTTGTAGTGAATGTGGGAAAGGTTTCACCTGGAAGCCTGGCCTCAGGAGACATCAGAGGACCC i echTel1.scaffold_287190 C 0 N 0 s xenTro2.scaffold_677 241960 94 + 553670 C-AAAGGACTCACACAGGGGAGAAA-CCATTTTCTTGTTCTGAATGTAGCAAATGTTTTCCAAATCGATTTAACCTTGATCGTCATCAGAGAATTC i xenTro2.scaffold_677 C 0 N 0 s tetNig2.chrUn_random 56320022 66 + 107808587 -ATGAGAGGTCACACAGGCGAGGAGCCCGTCCATCTGT------------GAAAGCT------GCGCTAGAACTTTCCAGGCCTC----------- i tetNig2.chrUn_random C 0 N 0 s fr2.chrUn 297541813 56 + 400509343 -ATGAGAATCCACACGGGTGAGAAG-CCGTATGTTTGCAAAACATGCAG-GAAGGCTTT------------------------------------- i fr2.chrUn C 0 N 0 s oryLat2.chr4 18769698 94 + 34636364 -AAACGagtccacacaggagaaaag-cctttttcctgtgaagaatgtggtaaaagtttTACTCGCAGACAATCCTTTGAGGTTCACATGAGAATCC i oryLat2.chr4 C 0 N 0 s danRer6.chr4 43841224 94 - 71658100 -ATAAAGACCCACACTGGAGAGAAA-CCATTCACATGCACCCAATGTGGGAAGAGTTTCAACAGATCAGCAAACCTTAATGAACGCATGAAGATCC i danRer6.chr4 C 0 N 0 s petMar1.Contig2426 11444 91 + 37044 -cagagaacacacactggagagaaa-cccttcaagtgcagtgtgtgtggtaaggcattttcacagtcaCGACATCTTCAtcgacaccagagaa--- i petMar1.Contig2426 C 0 N 0