##maf version=1 scoring=autoMZ.v1 a score=96534.000000 s hg19.chrUn_gl000229 0 214 + 19913 GCCGCTGTGGGATTTTCCGTGGGAGAGGTATGGGAGAGGACTGACGCGGCTTCCAGATCTATATCCTGTCAGACGTCTCTGGCTCAGCGTCCCCCACCGGCTGCCTGCCACCTTCCAAGGAGCTCTGAGGCCGATGCCCCGCCCCCCTTCATGTCCAGCCACCCTCCACCGGCTGGCCTACGCCCGGCGACCCCAAGGGAGCCGCGTTGACGCT s gorGor1.Supercontig_0000052 153758 214 - 249863 GCCGCCATGGNATTTTCCATGGGAGAGGTATGGGAAAGGACTGACGTGGCTTCCAGATCCATATCCTGCCAGACGTCTCTGGCTCAGCGTCCTCCACCAGCTGCCTGCCACCTTCCAGGGAGCTCCGAGGCCGATGCTCCGCCCCCCTTCACGTCCCACCACCCTCCTCCATCTGGCCTTTGCCCGGCGACCCCAAGGGAACCGCATTGATGCT i gorGor1.Supercontig_0000052 N 0 I 6 s panTro2.chrY 10045952 211 - 23952694 GCCGCCATGGGATTTTCCATGGGAGAGATATGCGAGAGGACAGATGCGGCTTCCAGATCTATAACCTGCCAGATGTCTCTGGCTCAGGGTCCCCCATCAGCTGCCTGCCACCTTCCAGGGAGCTCTGAGGCTGATGTCCCGCCCCCCTTCACGTCCCGCCACCCTCCTCTGGCTGGCCTTTGCCTGGCGACCCCAAGGGAACCACGTTGAC--- i panTro2.chrY N 0 I 9 s ponAbe2.chr2b 3027256 204 + 135000294 -------TGGGATTTTCCATGGGAGAGGTATGGGAGAGGACTGACATGGCTTCCAGATCTATATCTTGCCAGACATCTCTGGCTCAGCGTCCCACACCGGCTGCCTGCCAACTTCCAGGGAGCTCTGAGGCTGATGCCCCGCCCCCCTTCACGTCCTGCCACCCTCCCCTGGCTGGCCTTTGCCCGGGGACCCTAAAGGAACCATGTTGAC--- i ponAbe2.chr2b N 0 I 54 a score=0.000000 s hg19.chrUn_gl000229 214 380 + 19913 TTCTTCTTTTTTTTCTTGTTttattttattattattatagtttaagttttagggtacatgtgcacaacgtgcaggtttattacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatatctcctaatgctattcctccccccaccccacaagagtccccggtgtgtgaagttccccttcctgtgtccatgtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttgtttttttgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaagtacattaactcatcattttttttggtgcatagtattctaaggtgtC e ponAbe2.chr2b 3027460 54 + 135000294 I e panTro2.chrY 10046163 9 - 23952694 I e gorGor1.Supercontig_0000052 153972 6 - 249863 I a score=10671.000000 s hg19.chrUn_gl000229 594 49 + 19913 GAATCCTCCAGTGAGTACTTCCACTAGATTCCCCGGGTGGGCCGGATGC s gorGor1.Supercontig_0000052 153978 48 - 249863 GAATCCTCCAGCGAAGACTTCCACCAGATGCCCCGGATGAGCCGGATG- i gorGor1.Supercontig_0000052 I 6 C 0 s panTro2.chrY 10046172 48 - 23952694 GAATCCTCCAACGAAGACTTCCACCAGATGCCCCGGGTGGGCCGGATG- i panTro2.chrY I 9 C 0 e ponAbe2.chr2b 3027460 54 + 135000294 I a score=183188.000000 s hg19.chrUn_gl000229 643 372 + 19913 ATGGGATGAGACTGGACCACCCCGGACCGTGCTGTTCTTGGTGGTGGGTTGACGTACAGGGTGGACTGGCAGCCCCAGCATTGTAAAGGGTGCCCAGGTATGGAAATGtcacataggatgccctccttacagtcagcctgccttcagcttcctcaggcatgaagacaacttcccatcagatcctcttttcttccctttctccaccacacagATGAGACGCATGAGAGGGAGAAACAGCTCAATGGATACTGCTGACCTTCATTTGTGGAATCCTCAGTCATCTACAGACAGAGAGGTGACTAGACAGAGACCCAAATCAAACTCCATTTCCGGGTCCTCATGGTGGGATTGGtctctctctctctctctctc s panTro2.chrY 10046220 368 - 23952694 ---GGATG-GACTGGATCACCCCGGACTGTGCTGTTCTTGGGGGTTGGTTGACGTACATGGTGGACTGGCAGCCCCAGCATTGTAAAGGGTGCCCAGGTATGGAAATGtcacatatcatgccctcctttccgtcagcctgccttcagcttcctcaggcatgaagacaacttcccatcagaacctcttttcttccctttctccaccacacagATGAGATGCATGAGAGGGAGAAACAGCTCAATAGATACTTCTGAACTTCATTTGTGGAATCCTCAGTCATCTAGAAACAGAGAGGTGACTAGACAGGGACCCAAATCAAACACCATTTCCAGGTCCTCACGGTGGGATTGAtctctctctctctctctctc i panTro2.chrY C 0 C 0 s gorGor1.Supercontig_0000052 154026 368 - 249863 ---GNATG-GANTGGATCATCCCGGAACGTGGTGTTCTTGGGGGTGGGTTGACCTACAGGGTGGACCGGCAGCCCCAGCATTGTAAAGGGTGCCCAGGTATGGAAATGtcacataggatgccgtccttcccntcagcctgccttcagcttcctcaggcatgaagacaacttcccatcagaacctcttttcttccctttctccaccacacagATGAGACGCATGAGAGGGAGAAACAGCTTAATAGATACTGCTGACCTTCATTTGTGGAATCCTCAGTCATCTACAGACAGAGAGGTGACTAGACACGGATCCACATCAAACACCATTTCCGGGTCCTCATAGTGGGATTGGtctctctctctctctctctc i gorGor1.Supercontig_0000052 C 0 I 12744 s ponAbe2.chr2b 3027514 367 + 135000294 ATGGGATGAGACTGGACCATCCCGGACCGTGCTGTTCTTGGGGGTGAGTTGACATACAGGGTGGATTGGCAGCCCCAGCATTGTAAAGGGTGCGCAGGTATGGAAATGtcacataggatgccctccttcccatcagcctgccttcaacttcctcaggcatgaagacaacttcccatcagaacctcttttcttccctttctccaccacacagATGAGACCCATGAGAGGGAGAAAGAGCTCAATAGATACTGCTGACCTTCATTTGTGGAATCCTCAGTCATCTACAGACAGAGAGGTGACTAGACAAGGACCCAAATCAAACACCATTTCCGGGTCCTCATGGTGGGATTGGTCTCTCTCTCTCTCT----- i ponAbe2.chr2b I 54 C 0 a score=306543.000000 s hg19.chrUn_gl000229 1015 1358 + 19913 a------------------cacacacacacacacacacacacacacacacacacaATTTCCACATCTAGTTCACAAACCACACTAATTTATCCTTTTCACAGTATGCAGTCTGAGTAAAACCCACCTCACCCTCCACCCGGCGGCTGACGAAACCCCTTCTCTACAATTTATTAAAAAGATTATCTGggccgggcacagtggctcatgactgtcattccaacactttgggaggccaaggggggtggatcacttgaggccaggagttcaagaccaggctggccaacatggcgaaaccccatctctatgaaaaatagaacaattagccaggcctggtggcataggcttgtaatcacaactactcaggagactgagaagggcgaattgcttgaaccagggaggccgaggttgcagtgagctgagatcatgccatggcaattattgagacagagtgagactctctc-----aataaTCATAATATTATTATaaggttagttgtgcgtgctgatacctgactgtagtcgcagctactcgtgaggctgagataaagagaagatcacttgaggccccacaggttgaggcttcagtcagctgtgacccactgtaccctgggcAGTCACCAGTCAAGGAGATATGCCCTTCCCCAttttct---ttcttttcttt------ctcttcttttcttttcttttctt-----------------------------------------ctctcttcttctccctttctttctttctct-----ttctttctttcttgcctgcctcactgccttcctgcctttcttcttt--------cctcccttcctcccttccttctttcctcccgcctcggcctcccaaagtgccaggattactggcgtgaggcaccatgccTACTTGGCCTAAAGGGACACCCTTTGAAAGTAAGACACAGACAGCGCCATCCAGTGATCTGATTGATTGATTGA----CTGAtttagagacagtgtctcactctgtcaccctggcagtggtgccatcataactcactcaatgcagcatggacgcttctggactcaagcgatccttccacatcagcctccagagtagagtacctgggaccacaggcacgcgccattgtgcccagatcatttttatttatttatttattt-ttttcccgagacagagtttcgctcttgttgcccagactagagtgcaatggcgcaatcgtggcccaccacaacctctgcctcccgggttcaagcgattctcctgcgtcagcctcctgagtagctgggattgcagacatgcaccaccacgtctggctgattttgtattgttagtagagatggggcttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatccgccctcctcggcctcccaaactgctgggatggcaggcgtgagccactgctcctgg s panTro2.chrY 10046588 1422 - 23952694 tttctctctctctctctctctcacacacacacacacacacacacacacacaGGCAATTTCCACATCTAGTTCACAAACCACACTAATTTACCCTTTTCACAGTATGCAGTCTGAG------CCACCCCAGCCTCTACCCAGCGGCTGACGAAACCTCTTCTCTACAAATTACTAAAAAGATTATCTGggctgggcacagtgtctcccgcctgtcatcccagcactttgggaggccaaggcgggtggatcacttgaggccaggagttcaagaccagactggccaacatggcaaaaccccatcttgatgaaatatagaacaattagccaggcctggtggcataagcttgtaatcacaactactcaggagactgaggcgggcgagttgcttgaaccaggggtgccgagattgcagtgagctgagatcgtgccatggcaattattgagacaaagcaagactctgtctcaaTAATAATCACAATATTGTTATAAGATGAGTTTTgtgtgctgatacccacctgtagtcgcagctactcaggaggctgagataaggagaagatcacttgaggccccacaggtcgaggcttcagtcagctgt----------ATCCTGGGTAGTTACCAGTCAAGGAGATATGCCCCTCCCCATtttctattttcttttctct------cttcttttttcttctctcttctttctttctttctttctttctttctttctttctttctttctttctatctttttctttctttctctctttctttcctttttctttctttcCTGCCTGACTGACTGCCT-cctgccttccttcttttctcccttcctcccttcctcccttccttctttcctcccacctcggcctcccaaaatgctgggattactggtgtgaggcaccatgcctgCTTGGCCTAAAGAGACACCCTTTGAAAGTAAGACACAG----CACCTTCCAGTGATCtgattgattgattgattgactgattTAgagacagcgtcttgctctgtcaccctgggagtggtgccatcataactcactcactgcagcatggatgctcctggactcaagtgatcctcccacctcagcctccagagtagagtacctgggaccacaggcaggtgccactgtgcccagatcatttttatttatttatttatttatttTCCtgagacagagtttcacttttgttgcccagactggagtgcaatggcacgatcttggcccacagcaacctctgcctcccaagttcaagcgattctcctgcgtcagcctcctgagtagctgggattgcaggcatatgccaccacgtctgcctgattatgtattgttagtagaggcggggcttctccatgttggtcaggctggtctcgaactcccaacctgaggtgatccgccctcctcggcctcccaaagtgctggaatggcaggcgtgagccactgcacctgg i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3027881 1390 + 135000294 ---------------------------cacacacacacacacacacacacacacaATTTCCACATCTAGTTCACAAACCACACTAATTTACCCTTTTCATAGTATGCAGTCTGAGTAAAACCCACCCTACCCTCCACCCGGCGGCTGATGAAACTCCTTCTCT--AGTTTATTAAAAAGATTATCTGggacgggcacagtggctcacgcctgtcattccagcactttgggaggccaaggagggtggatcacttgaggccaggagttcaagaccaggctggccaacatggcgaaaccccatctctatgaaaaatagaacaatttgccaagcctggtggtataggcttacaatcataactcctcaggagactgaggcgggccagttgcttgaaacagggaggccgaggttgcaatgagctgatatcgtgccatggcaattattgagacagaccgagagtctgtctcaaTAATAATCATAATATTATTATaagatgagttgtgcatgctgatacctgcctgtagtcgcagctacttgggaggctgagataaggagaagatcacttgaggccctacagatcgaggcttcagtcagctgt----------ATCTTGGGCAGTCACCAGTCAAGGAGATATGCCCTTCCCCGttttct---ttcttttcttttctttcctactcttttcttcttttttctt---ctctcttcttctccctccctttgtttctttccttctttctttctttctctttctttctctttctttcc-----ttctttctttctttcCTGCCTGACTGccttcctgcctttcttctttcctcccttcctcccttcctcccttccttctttcctcctgcatcattctcccaaatttgtgggattactggcatgaggtaccatgcctgATTCTCCTAAAGAGACACCC-TTGAAAGTAAGACACAGATAGCGCCTTCCAGTGATCTGATTGATTGATTGA----CTGAtttagagacagcgtctcactctgtcactctggcagtgctgccatcttaactcactcactgcagcttggacgctcctggactcaagtgatccttccacctcagcctccagagtagagtaccaggaaccacaggcatgcaccactgtgcccggatcatttttAATTATTCAttta----tttttccgagacagagtttctctcttgttgaccagattggagtgcaatggcgtgatcttggctcacagcaacctctccctcccgggttcaagcgattctcctgcatcagcctcccgagtagctgggattgcaggcatgcaccaccacgtctggctgattttgtattgttagtagagacggggcttctccatgttgctcaggctggtctcgaactcctgacctcaggtgatccgccctccccagcctcccaaagtgctgggatggcaagcgtgagccactgcgcctgg i ponAbe2.chr2b C 0 I 3 e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=8569.000000 s hg19.chrUn_gl000229 2373 113 + 19913 ccttcatttttaaatgtttttccacagaaagggtctcatcattttgttgcaaccctcctgacccggcgtctcaaagtgctggcgtgaagggcttgagccactgcaccTTGACT s panTro2.chrY 10048010 111 - 23952694 ccttcattttta--tgtttttccacagacagggtctcatcattttgttgcaaccctcctgaaccagtgtctcaaagtgctggcgtggtaggcatgagccactgcacctggACT i panTro2.chrY C 0 C 0 e ponAbe2.chr2b 3029271 3 + 135000294 I e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=10737.000000 s hg19.chrUn_gl000229 2486 51 + 19913 CCGGGGAATGATTCACGACCATGACCGCTGTACt----------------ctttctttctttctttc s panTro2.chrY 10048121 67 - 23952694 CTGGGGAATGATTCAAGACCATGACCGCTGTACTAAttctttctttctttctttctttctttctttc i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3029274 51 + 135000294 CCGGGGAATGATTCACGACTACGACCGCTGTACT----------------GATTCTTTCTTTCTTTC i ponAbe2.chr2b I 3 I 106 e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=8439.000000 s hg19.chrUn_gl000229 2537 128 + 19913 tttcctttcttctttctttcttttctt-----ctttctttcatttattgatgaatttttttattattgattgattgattgatt--------TTGAGAGGGAGTCTTGCTCTGGTCGAGGCGATGCAAGGCGAGGCGCATCG s panTro2.chrY 10048188 141 - 23952694 tttctttctttctttctttcttttctttctttctttctttcttCCATTGATGAATTTTTTTATTattgattgattgattgattgattgattttgagacggagtctctctctggtccaggcgagGCGAGGCAAGGGGCATCA i panTro2.chrY C 0 I 22 e ponAbe2.chr2b 3029325 106 + 135000294 I e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=397025.000000 s hg19.chrUn_gl000229 2665 1770 + 19913 TTCTAAAGCCCCATTCAAATGCACAAAGCCCTATTTCCTTCCTGGAGTTGGAGCTGATGCCTTCCATTGCCTTGGACTTCTCTCCATTCAGAAGATTTTACAGGTGCAACCCCACCCAGAGGCTGGCTGCGGCTGAGGATTAGGGGATGTGGTGGGGCTGGAAACTCGGTCCCCTATTGTTGCAAGCTCAGCCAAGACATTCCCCGACCCCCATCGCTTGCTCACCCTTTGAGATCCCCTGCCTTCACCGCCTTGGAGGCTGACCTCTTAATTTAATTTCTGTCTTTCTTCCTTTCCTGAGTTTGAGGAGGGGGTGCAGGAATGAGGGTGTGTGGGGGGAGGGGGTGCGTGGTGGGGACGGAGGGGAGCGTCCTAAGGGTCGATTTAATGTCATGTCTCTTTCACCGCCACCACCTAGGATGAAagcaacaatcagctaaataccgtgtgttctcatccataagtgagaacttatagatgagaattctgcgtgggcagaacgagggtgacgagagacgcgggagcctacttgagggaggaggggtggaaggagagacagcttcaggagaaaccaaac---caaaacaaaacatgaaaactgtcgagtactgcactgagtgtccgggcgatgaaatcatctgcacactgaacccccccgtcagaagtttacctatgtaacgatcttgcacatgtatgtttgaacaagaaatgaaagttAGGGgagaaagagagagaaagg-------gagagagagagggaaagagagagagagagaAGTGAAACGAAACACCACCTCCTTGACCTGAGTCAGGGTGTTTCTGGCCTTTTAGGGGAACATTCAGCGACAATGCAGTACTTGGGCCTGTTCttttttttttttt-cttcttttc-ttttttttggattgagtctctctcgctctttcacccaggctgtggtgcagtggcgctctctcggctcactgaaacctctgcttctcgggttccagtgatttttctttggtagctgggattacaggcgcgcacgacgatagcaggctaatttttctatttttagtagagatgaggtttctccatgttggccacgttggtattgaactcctgacctcaagtgatccaccctcctgggcctcccaaagtgctgggacgacaggcctgagccaccgGGATTTCAGCCTTTAAAAGCGCGGGCCCTAACATTTTTCCCTGCGGCCCTTATGCTCAGAATGACATGTCCTGTCTGCCATAGGTTGACTCGTTGAGTCCCCTATgccattgcactctagcctgggcagcaagagcgaaactccgtcCTCCCACCTTCCCGTGC-----------------------------aaataaataaataaataaataaataaataaaATCTCTACACATGACATATAAGTGTGTGTTCCCATGAGTTATTTCTAAGAAATGGCACTGTACACAGAATgcagtggctcacgtctgtcatcccagcactttgggaggccgcggtgggtgggtcacgaggtcaggagttcaagaccagcgtagccaacatggtgaaactgactcagtttcgtattttcaatctctactgaaaatactaaactgagtcgggcgcggtggggcaggcacctgtagtcccagctactcgggaggttgaggcgggagaatctcttgaacctggcaggcagaggtttcagtgacccgggatggtgccactgcactatagcttggtcgacagagtgagacttggtctcctaataaataaat-------------------------gaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaagaa--g s ponAbe2.chr2b 3029431 1765 + 135000294 TTCCAAAGCCCCATTCAAATGCACAAAGCCCTTTTCGCTTCCTGGAGTTGGAGCTGATGCCGTCCATTGCCTTGGGCTTCTCTCCATTCAGAAGCTTTTACAAGAGCAACCCCACCCAGAGGCTGGCTACAGCTGAGGATTAGGGGGTGTGGT-GGTCTGGAAACTCGGTCCCCTATTGTTACAAGCTCAGCCAAGGCATCCCCCGACCCCCATCACTTGCTCACCCTTTGAGATCCCCTGACTCCACCGCCTTGGAGACTGACCTCTTACTTTAATTTCTGTCTTTCTTCCTTTCCTGCGTTTGAGGAAGGGGTGCAGGAATGAGGGTGTGTGTGACAAGGGGGTGTGGGGTGGAGCTGGAGGAGAGCATCCTAAGGGTCGATTTAGTGTCATGCCTCTTTCACCGCCACCACCGAAGATGAAagcaacaatcagctaaataccgcgtgttctcatccataagtgggaacttatagatgagagttctgcgtgggcagaatgagggggacgagatacgtgggaacctacttgagggaggagggatggaaggagggacagcttcaggagaaaccaaaa---caaaacaaaacatgaaaactgtcgagtactgcgctgagtatccaggttatgaaatcatctgcacactgaacacctccatcagaagtttacctatgtaacaatcttgcacatgtatgcttgaagaagaaatgaaagttAGGGAagaaagagagagagagg---gagaaagagagggagagagggaaagagagagagaAGTGAAACGAAACACCTCCTCCTTGACCTGAGTCAGGGGGTTTCCGGCATTTTGGGGGAACATTCATTGACAATGTAGTATTTGGGTC-Gttcttttttttctttt----cttttc-tttcttttggactgagtctctctcgctctgtcacccaggatgtggtgcagtggcactctctcagctcactgaaacctctgcttcctgggttccggtgattcttcttcggtagctgggattacaggcgtgcaccaccacaactggctaatttttctatttttagtagagacggggattctccatgttggccacgttggtattgaactcctgacctcaagtgatctgccttcctgggcctcccaaagtgctgggacgacaggcctgagccgccgGGATTTCAGCCTTTCAAAGTGCGGGCCCTGCCAATTTTCACTGCGGCCCTTACGATCAGAATGACATGTCCTCTGTGTCACAGTTTGACTCCTTGAGTCCCCTATgccattgcactctagtctgggcagcaagagcgaaactccatcccCCTACCTTCCTGTGC-----------------------------AAA---------AAATAAACAAATAAATAAAATCTCTACACATCACCTATAAGTGTGTGTTCCCATGAGTGATTTCTAAGAAATGTCACTGTACAccgaatgcagtggctcacgtctgtcctcccagcactttgggaggccgaagtgggtgggtcacgaggtcaggagttcaagaccagcctagccaacatggtgaaa------------------ccctgtctctactgaaaatatgaaact----taggcgtggaggggcaggcacctgtaatcccatctactcgggaagttgaggcaggagaatcgcttgaaccttccaggcggaggttgcagtgacccgggatggtgccactgcactacagcctgggcgacagagtgagacgcagtctctaaataaataaatagaaagaaagaaagaaagaaagacagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag i ponAbe2.chr2b I 106 C 0 s panTro2.chrY 10048351 1790 - 23952694 TTCTAAAGCCCCATTCAAATGCACAAAGCCTTATTTCCTTCCTGGAGTTGGAGCTGATGCCTTCCATCGCCTTGGGCTTCTCTCCATTCAGAAGCTGTTACAGGCACAACCCCACCCAGAGGCTGGCTGCCGCTGAGGATTAGCGGGTGTGGTGGGGCTGGAAACTCGGTCCCCTATTGTTGCAAGCTCAGCCAAGACATCCCCCGACCCCCATCCCTTGCTCACCCTTTGAGGTCCCCTGACTCCACCGCCTTGGAGGCTTACCTCTTACTTTAATT--TGTCTTTCTTCCTTTCCTGCATTTGAGGAGGGGGTGCAGGAATGAGGGTGTGTGTGGGAAGGGGGTATGGGGTGGGAATGGAGGGGAGAGTCCTAAGGGTCTATTTAGTGTCATGCCTCTTTCACCGCCACCACTGAAGATGAAAGCAACGATTagctaaataccacatgttctcatccataagtgggaacttatagatgagagttctgcgtgggcagaaccagggggaccagagacgcgggagcctacttgagggaggaagggtggaaggagagacagcttcaggaaaaaacaaacaaacaaaaaaacccatgaaaactgttgagcactgtgctgagtatccggctgatgaattcatctgcacactgaacacccccgtcagaagtttacctatgtaacaatcttgcacatgtatgtttgaataagaaatgaaagttAGGGgagaaagagagagaagggagagacagagagagtgagagagggaaagagagagagaAGTGAAACGAAACACCACCTCCTGGACCTGAGTCAGGGGGTTTCCGGCCTTTTGGGGGAACATTCAGCGACAATGCAGTATTTGGGCCTCTTCTttttttttttttccttcttttcttttttttttgactgagtttctcttgctctgttacccaggctgtggtgcagtggcactctctcggctcactgaaacctctgcttcccaggttccaatgattcttcttctgtagctgggattacaggtgtgcaccacgacagccggctaatttttctgtttttagtagagacggggtttcttcatgttggccacgttggtattgaactcctgacctcaagcgatccaccctcctgggcctcccaaagtgctgggatggcaggcctgagctgccgGGATTTCAGCCTTTAAAAGCACGGGCCCTTACACTTTTCGCTGTGGCCCTTACACTCAGAATGACGTGTCTTCTCTGCCTTAGGTTGACTCCTTGAGTCCCCTATgccattgcactctagcctgggcagcaagaccgaaactctgtcccCCCACCTTCTGGTGCaaaataaaataaaataaaataaaataaataaataaataaataaataaataaataaataaaATCTCTACACATGACATATAAGTGTGCGTTCCCATGAGTGATTTCTAAGAAATGGTGCTGTACActgaacacagtggcacacgtctgtcatcccagcactttgggaggccgaggtgggtgtttcacgaggtcaggagttcaagaccaacctagacaacatggggaaa------------------tcctgtctctactgaaaataagaaactgagctgggcgcagtggggcagacagctgtaatcccagctactcaggaggttgaggtgggagaatagcttgaatctggaaggcagatgttgcagtaacccgggatggcgccactgcactacagcctgggtgacagagtgagacttggtctccaaacaaataaat-------------------------aaataaatgtaaaaaagaaagaaaga---aaagaaaaggaaaggaaagg i panTro2.chrY I 22 C 0 e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=9977.000000 s hg19.chrUn_gl000229 4435 27 + 19913 aaaggaaa--aaagaaaagaaaagaaaag s panTro2.chrY 10050141 29 - 23952694 aaaggaaaggaaagaaaagaaaagaaaag i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3031196 27 + 135000294 aaagaaag--aaagaaagaaagaaagaaa i ponAbe2.chr2b C 0 C 0 s papHam1.scaffold45662 3131 27 + 5001 aaaggaaa--aaaaaaaaaaaaaAaaaag i papHam1.scaffold45662 N 0 N 0 e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=154199.000000 s hg19.chrUn_gl000229 4462 843 + 19913 aaaaagaaaag------aaaaaagaaaaccagaaaagaaaGATACAATGAAAGAAAAGTCACTGTATCGCTACTGGGCTAGGACCTtccctctttctgtctgtttctctgt--ctctctctgtccatctctgtctttctctatctgtctctttctctgcctgcctgtctgtctgtctctttctttctctctctctctctgtctctctctctctgcctgtctcacgatgtctgtcttctgtctaactctctttctctgc----ctgtctctctctctctc------cctccctctctgtttctctctctctgtctctctctgtctgtttctctctctctctg-----------------------------------------------------------------------------tttttctctgtctctctgtc------tctatttctttttctgag--tctctgtctgtctctctcgctctctctctctctgtctctctctctgtgcctatcttctgtcttactctctttctctacccgtctgtctctctctctgtctgtccctctctctccctttctgtctctctctctctcactctctctctgtctgtctctctttctgtctgtttctctctgtctctctctctccatgtctgtatgtctctctctttctttctctctgcctctgtctgtctctctctgcctgtctctctcactgtgtctgtcttctgtcttactgtctttctctgcctgtctc------tctctctctctccctccctgcctgtctctctc----------tctccctccctgcctttctgtttctctctgtctgtctctgtctg--------tctcttcttctgtctgtctgtctctctctttctttttttttttttt--cagatggagtctcactgtttcacgcaggctggagtgcagtggcgccatcttggctcactgca s ponAbe2.chr2b 3031223 808 + 135000294 gaagagaaaagaggaaaagaaaagaaaaccagaaaagacagagaaaatgaaagaaaAGTCATTGTGTCACTACTGGGCTAGGACCTtctctttttctgtctgtttctctctgactctctctgtccatctctgtctttctctatctgtctctttct----ctctctttctgtctgtctctttctttctctctgtc--tctgtctctctctctctgcctgtctcactgtgtctgtcttctgtct-actctctttctctgc----ctgtctctctctctttctgtctgtttctctctctgtgtctgtctctctgtctctctttgtctgtctctgtttttctctg-----------------------------------------------------------------------------------tctgtctctctgtctgtctctctctttctttttctgagtctctctttctgtctctctcactctctctg------tctctctctctgtgcctatcatttgtcttactctctttctctacccatctgtct----------------ctctccctccctttctg--tctctctctgtca--ctctctctgtctctctctctttctgtctgtttctctctgtctctctctctccatctctgtctgtctctc----tctttctctctgcctctgtctgtctctgtctgcctgtctc------------------ctgtcttactctatttttctgcctgtctc------tctctctctctccctgcctttctgtttctctctgtctctctgtctctctctcttcctgtctgtttctctctgtctgtctttttctg--------tctcttcctctgtctg------tctctctttctttttttttttttt--cagacggagtctcactgtgtcgcccaggctggagtgcagtggcgccatctcggctcactgca i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10050170 908 - 23952694 -aaaagaaaag--------aaaagaaaaccagaaaagaaagagaaaatgaaagaaaagaCACTGTATTGCTACTGGGCCAGGACct---ctctttctgtgtatttctctct--gtctctctgtccatctctgtctttctctatctgtctctttct----ctgtctatctgtctgtctctttctttctctctatc------tctgtctctctctgcctgtctcacggtgtctgtct----tctaactctctttctctgcctgtctgtctctctctctccc------cctccctgtctgtttctctctctctccccctccctgtctgtttctctctctctctgtctctctctttctgtctgcttctctctgtctctctctgtctgtctctgtttctctctgtctctctctgtctgtctcttttttctctgtctctctgtctgtctatctatttctttttctgagtctctctgtctgtctctatcactctctctc------tctgtctctctgtgcctatcttctgtcttactctctttctctacccttctgtctctctctttgtctgtccctctccctccctttctg--tctctctctctcactctctctctgtctctcactctt----tctgtttctctctg--tctctctctccatctctctctgtctccc----tctttctctctgtctctgtctgtctctctctgcctgtctctctcac--tgtctgtcttctgccttactctcttcctctgcctgtctctctctttctctctttctccctccctgcctttccgtttc----------cccccctctctctctctgtctctctctctgtctgtttctctctatctcttcctctcttcctctgtctgtctgtctctctctttctttttttttttttttccagagggagtctcactgtgtcacccaggcaggagtacagtggcgccatcttggctcactgca i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0000052 154394 12744 - 249863 I a score=105839.000000 s hg19.chrUn_gl000229 5305 222 + 19913 agctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactataggcgcccgccaccacacctggctaatttttcgtatttttagtagagacgggatttcaccgtgttagccaggatggtctcg-------atcttctgacctcacgatccgcccgccttggcctcccaaagtgctgggatgagaggagtgagccaccgtgcccagACTGt s panTro2.chrY 10051078 229 - 23952694 agctccacctcccaggttcacgctattctcctgcctcagcctccggagtagctgggactataggctcccgccaccaagcccggctaattttttgtatttttagtagagacgggatttcaccgtgttagccaggatagtctcgatctccaatcttctgagctcgtgatccgcccgccttggcctcccaaagtgctgggatgacaggagtgagccaccacacccggactgt i panTro2.chrY C 0 C 0 s gorGor1.Supercontig_0020423 0 222 - 10004 agctccgcctcccaggttcgcgccattctcctgcctcagcctcccaagtagctgggactataggcgcctgccaccacgcctggctaatttttcgtatttttagtagagacgggatttcaccttgttagccaggatagtctcg-------atcttctgacctcatgatccgcccgcctcggcctcccaaagtgctgggatgacaggagtgagccaccccgcccagACTGt i gorGor1.Supercontig_0020423 n 12744 C 0 s ponAbe2.chr2b 3032031 209 + 135000294 agctccacctcccaggttcacgccattctcctgcctcagcctccggagtagctgggattataggcgcccaccaccatgcccagctaattttttgtatttttagtagagacgggatttcacagtgttagccagaatggtctcg-------atctcctgacctcattatccgcctgccttggcctcccaaagtgctgggatgacaggagtgagccacc------------- i ponAbe2.chr2b C 0 I 9 a score=40473.000000 s hg19.chrUn_gl000229 5527 130 + 19913 ctctctctttctttctctctctctctttctctctctctctctctctctgtgcctatcttctgtctttctctctctgcctgtctctctctctctctctgcctgtctctctctctctctgtctgtctctctc s panTro2.chrY 10051307 114 - 23952694 ctctctctttctttctc----------tctctctttctctctctctctgtgcctatcttctgtcttactctctt------tctctccctgtctgtctgtctctctctctctctctctccctgtctctctc i panTro2.chrY C 0 I 285 s gorGor1.Supercontig_0020423 222 98 - 10004 ctctctctttctttctctc--------tctctctctttctctctctctttgcctatcttctgtcttactctctt----------tctctgcctgtctgtctctctctctctctctc-------------- i gorGor1.Supercontig_0020423 C 0 C 0 s ponAbe2.chr2b 3032249 110 + 135000294 ctgtctctttctttctctctc------tctttctctctctctctctctgtgcctatcttttgtcttactctctt----------tctctgcctct----ctctctctctctctctctgtctgtctctctc i ponAbe2.chr2b I 9 C 0 a score=21635.000000 s hg19.chrUn_gl000229 5657 124 + 19913 cctccctgtctgtttctctcactctgactctctggctctcgcgtgctctctttct--gtctctctctcacgctatttctctctgtccgtctct--ctgtctttttctctgtctctctctttctttctc s gorGor1.Supercontig_0020423 320 128 - 10004 cctccctgtctgtttctctcactctgtctctctcgctctcgcgctctctctctctctgtctctctctcncgctatttctctctgtccgtctctgtctgtntttttctctgtctctctctntctttctc i gorGor1.Supercontig_0020423 C 0 I 220 s ponAbe2.chr2b 3032359 103 + 135000294 cctccctgtctgtttctctctctctgtctctctcgctctcac--tctctctgtct--gtctctctctcttgctgtttctctctgtccatctctgtctgtctctttct--------------------- i ponAbe2.chr2b C 0 C 0 e panTro2.chrY 10051421 285 - 23952694 I a score=33769.000000 s hg19.chrUn_gl000229 5781 286 + 19913 tctgtctctgtctctctctccctctatttctctctgtccatctctctgtctttttctctgtctctctctttctttctctctgtctctgtctctctctccctctgcctgtctctctcactgtgtctgtcttcagtcttactctctttctctgcctgtctgtctgtctctctctccccatctctttctgtttctctctctctctatctctcactctctccatctctctctctttctgtttctgtctctctctgtctgtctctgtgtgtctgtctgtttctctctcttt s panTro2.chrY 10051706 244 - 23952694 tctttctctatctctctctctttctgtttctctctgtccatctct--gtcttt--ctctgtctctct------ttctctctgtctctgtctctctctttctctgcctgtctctctcactgtgtctgtcttctgtcttaatct--ttctctgcctttctgtttgtctctctctctccctccctttct--------------------ctctctctctccatctctctctctttctgtttct------ctctgtctgtctctgtgtgtctgt----ttctctctcttt i panTro2.chrY I 285 C 0 s ponAbe2.chr2b 3032462 183 + 135000294 -----------------------------------------------------ctgtctgtttctctctttctttctctctgtctctgtctctctctccctctgactgtctctctcactgtgtctgtcttctgtcttactcactttctctgcc--------tgtctttctctctccgtctctctct--------------------------------------ctttctgtctgtttctctctgtctctgtctttctctgtctgtctgt----ttctctatttct i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0020423 448 220 - 10004 I a score=8785.000000 s hg19.chrUn_gl000229 6067 32 + 19913 gtctctctctctttctg--tttctctctgtctgt s panTro2.chrY 10051950 32 - 23952694 ctctgtctctctctctg--tttctgtttatttct i panTro2.chrY C 0 C 0 s gorGor1.Supercontig_0020423 668 34 - 10004 ctctctctctctttctgnntgtttctctgtctgt i gorGor1.Supercontig_0020423 I 220 n 220 s ponAbe2.chr2b 3032645 32 + 135000294 ctgtctctctccgtctc--tttctgtctgtttct i ponAbe2.chr2b C 0 C 0 a score=54731.000000 s hg19.chrUn_gl000229 6099 256 + 19913 ctctg--tctctctctctctctctctgtctctctccctccctgtctgtctgtttctctctctctctgtctctgtctctctctctttctgtctgtttctctctgtctctctctgtccatctctgtctttctatgtctgtctctttctctgtcagtctgtcagac-accccgtgccggggagggccctgccccttccacgaaagtgagaagcgcctgcttagagaggcccagaggaatctagaccgacgagacttgctagg s ponAbe2.chr2b 3032677 245 + 135000294 ctctgtctctgtttgtctctctctctgtctctctccctccctgtctctctgtt--------------tctctgtctctctctctttctgtctgtttctctctgtctctcccagtccatctctgtctttctatgtctctctctttctctgtcattctgtcAGACTcccccatgccagggacggccctgacccttccacaaaagtgagaagtgcctgcttagagaggccgagaggaatatagacagacgggcctcgctagg i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10051982 248 - 23952694 ctctg--tttgtctctctctctctctgtctctctccctccctgactgtctgtttctctctct----gtctctgtctctctctctttctgt----ttctctctgtctctctctgtccatctctgtctttctatgtctgtctctttctctgtcagtctgtcagag-cccccgtgctggggagggccctgccccttccaagaaagtgagaagcacctgcttagagaggccgagaggaatctagacagacgggccttgctagg i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=43671.000000 s hg19.chrUn_gl000229 6355 129 + 19913 cttcgccactcggcttatGATTTCGGGAGGTCGAGGCCGGGTCCCCACTTGGATGGAAGGGGCATTTTCACACTTTTCTCTCTGTCATGTGTGGCATCCCTAATTCTCATATTTTCCTGATCAGCTCCT s panTro2.chrY 10052230 129 - 23952694 cttcgccacttggtGCATGATTTTGGGAGGTCGAGGCCGGATCCTCACTTGGATGGAAGGGGCATTTTCCAACTTTTCTCTCTGTCATGTGTGGCGTCCCTACTTCTTGTATTTCCCTGATAAGCTCCT i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3032922 129 + 135000294 cttcaccactcagtgtatGATTTCAGGAGGTTGAGGCCTGGTCCCCACTTGGATGGAAGAAGTATTCTCAAACTTTTCTTTCTGTCACGTGCGGCGTCCCTACTTCTTGTATTTCCCTGATAAGCTCCT i ponAbe2.chr2b C 0 C 0 s proCap1.scaffold_29965 5961 129 + 26549 CTTTGCCAGTCTCTCTTCTCTTTGAGGAGATCAAGGCCAGGCCCCCACTTAGCTTGAAGGGACATTTTAAGTATTGACTTTCTGTCACCTGAGGTATCTTTGCCTCTTACATTTTTCCAACAAACTCCT i proCap1.scaffold_29965 N 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=81144.000000 s hg19.chrUn_gl000229 6484 350 + 19913 CGACTTAAAAATACACGGTTAAggccaggtgcggtgactcacgtctgtcatcccagcactttgggaggccgaggcgggtggatcacctgaggttggcagttcgagaccagccttgccaacatggcgaaaccccgtctctactaaaaatagttaattgagtcgagcgtgggggggcaggcgcctgtaatgccagctactcgggaggctgaggtgggagcatcgcttgaacctgggaggcggaggctgcagtgagccgagatcgcaccactgcactacagcccgggctgtagagtgagtgagactctgtttctaaataaataaataaataaata--------------------------------------------------------CATTCTTTTCCGTGCTGA s panTro2.chrY 10052359 378 - 23952694 CGACTGAGAAATACACCTTTAAggccaggcgcggtggctcacgtctgtcatcccagcagtttgggaggccgaggcgggtggatcacctgaggttgggagttcaagaccagccttgccaacacagcaaaatcccgtctctactaaaaatattaaattgagtcgggcgcggtggggcaggtgcctgtaatgccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggctgcagtgagccgagatcgcgccactgcactacagcccgggctgtagagtgagtgagactctatctctaaataaataaataaataaataaataaataaataa----------------------------ataaataaataaatGCATTCTTTTCCGTGCTGA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3033051 405 + 135000294 CAACTTAAAAATACATGGTTAAggccaggcacagtggctcacatctgtcatcccagcacgttgggaggccaaggcgggtggatcacctgaggttgggagttcgagaccagccttgccaacacggc-aaaccctgtctctcctaaaaatattaaactgagtcgggttcagtggggcaggcccctgtaatgccagctacttgggaggctgaggtgggagaatcgcttgaacctggcaggctgaggctgcagtaagccaagatttcgccactacactacagcctgggctgtagagtgagcgagactctgtctctaaataaataaataaataaataaataaataaataaataaataaataaatacataaataaatagataaataaataaatGCACTGTTTTCCGTGCTGA i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=121076.000000 s hg19.chrUn_gl000229 6834 274 + 19913 CTGACACTTGCAGGCATCGGTTGTCTTCGGGCATCACCTAGCGGCCACTGTTATTGAAAGTCGAGGTGACACGGAGGGAGGTCT---CGCTGACTTCACGGAGCCTGGGGCAACCGATTTCTCTCTCTCCCTTCTGGAGGCCCCTCCCTCTCTCACTCTTTGCCTAGGGAACCTCCGCCCTGGCGGGGGCCCTATTGTTCTTTGATCAGCGCTTTAGTTTTCTTTGTGTGTTGGTTTCTTTCATGCGCATAGACTCTTCTACTTGGGTTTTAGGAGG s ponAbe2.chr2b 3033456 277 + 135000294 CTGACACTGGCAGGCATCGGTTGTCTTCGGGCATCACCTAGCGGCCACTGTTATTGAAAGTCGAGGTGACACGGAGGGAGGTCTTGCCGCTGACTTCACCGAGCCTGGGGCAACAGGTTTCTCTATCTCCCTTCTGGAGGCCCCTCTCTCTCTCCCTCATTGCCTAGGGAACTTCCGGACTGTCGGGGGCCCTATTGTTCTTTGATCAGCTCTTTAGTTTTCTTTGTGTGTTGGTTTCTTTCATTCGCATAGACTCTTCTACTTGGGTTTTAGGAGG i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10052737 273 - 23952694 CTGACACTTGCAGGCATCGGTTGTCTTCGGGCATCACTTAGTGGCCACTGTTATTGAAAGTCGAGGTGACACAGAGGGAGGTCT---CCCGGACTTCACCGAGC-TGGGGCAACGGGTTTCTCTCTCTCCCTTCTGGAGGCCCCTCCCTCTCTACCTGGTTGCCTAGGGAACCTCCGCCCTGGCGGGGGCCCTATTTTTCTTTGATTAGCGCTTTAGTTTTCTATGTGTGTTGGTTTCTTTCATGCGCATTGACTCTTCTACTTGGGTTTTAGGAGG i panTro2.chrY C 0 C 0 s calJac1.Contig2838 244014 277 + 290353 CTGACACCTGCAAACATCAATTGTCTTCCGGCATCACCTAGCAGCTGCTGTAATGGAAAATAGAGGTGGTGCGGAGGGAGGTCTGCCTGAGGACTTCACAGAGCCTGGGGCAACCGGTTTCTCTTCCTCCCATCTGGAGGCCCCTTCCTCTCTCCCTTGTTGCCTGGGGAACCTCCGCCCTGGTGGGGGTCCTATGGTTCTTTTATCAGTACTTTGTGTTTCTTTGTTTGTTGGTGTCTTTCATGCACATAGACTCTTCTACTTGGGCTTTATGAGG i calJac1.Contig2838 N 0 I 201 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=59685.000000 s hg19.chrUn_gl000229 7108 238 + 19913 GGTCAGTTTAATTTTCAAGTCGCCCCCCGGCTCCCCCCACTACCCACGTCCCTTTACCTTCATTTAGTGAGTCAGTTAGGTGGGTTCCACCCAAACTCCCCACCCCCCGCCTCCCAACACCCTGCTTGGAAACCTTCCGGAGCCACCCCGGTGTGCCTCCGTCTTCTCTCCCCTTCCCCCACCCCTTGCCGGCGATCTCATTCTTGCCAGGCTGACATTTGCAACGGTGGGCGTCAGG s panTro2.chrY 10053010 238 - 23952694 GGTCAGTTTAATTTTCAAGTCGCCGCCTGGCTCCCCCCACTACCTATGTCCCTTTACCTTCATTTAGTGAATCAGTTAGGTGGGTTCCCCCCAAAACCCCTACACCCCGCCTCCCAACACCCTGCTTGGAAACCTTCCAGAGCCACCCAGGTGCGCCTCCGTCTTCTCTCCCCTTCTCCCACCCCTTGCCAGAGATCTCATTCTTGCTAGGCTGACATTTGCAACGGTGGGCGTCAGG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3033733 238 + 135000294 AGCCAGTTTAATTTTCAAGTCGCCCCCTGGCTCCCCCCACTACCCACGTCCCTTTACCTTCATTTGGTGAGTCAGTTAGGTGGGTTCCCCTCAAACCCCCCAACCCCCGCCTCCCAACAGCCTGCTTGGAAACCTTCCGGAGCCACCCCGGTGTGTCTCTGTCTTCTCTCCCCTTCCCCCACCCCTTGCTGGTGATCTCATTCTTGCCAGGCTGACATTTGCATTGGTAGGCGTCAGG i ponAbe2.chr2b C 0 C 0 e calJac1.Contig2838 244291 201 + 290353 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=29994.000000 s hg19.chrUn_gl000229 7346 65 + 19913 CCTCACTCAGTGGCCACCGTTTTTGAAGATGGGGGT--------GGCCCGGTCCCACTTCCCCAGAGGCAGCT s ponAbe2.chr2b 3033971 65 + 135000294 CCTCATTCAGAGGCCACCATTTTTGAAGATGGGGGT--------GGCAAGGTCCCACTTCCCCAGAGGCAGCT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10053248 65 - 23952694 CCTCACTCAGTGGCCATGGTTTTTGAAGATGGGGGT--------GGCACGGTCCCAGTTCCCCAGAGACAGCT i panTro2.chrY C 0 C 0 s calJac1.Contig2838 244492 73 + 290353 CCTCACTCAGTGGCCACTGTTTTTGAAGATGGAGGTGGGGGTGAGGCATGGTCCCACTTCCCCAGAGGCAGCT i calJac1.Contig2838 I 201 I 85 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=18596.000000 s hg19.chrUn_gl000229 7411 80 + 19913 TGGGCCAATGGCATAGCCCTTGACCCGCGTGGGCAAGCGGGCGGGTCTGCAGTTGTGGGTTTTTTCCCCCGCTTCCCTCT s panTro2.chrY 10053313 79 - 23952694 TGGGCCGATGGCATAGCCCTTGACCCGCGTGGGCAAGCGGGCAGGTCTGCAGTTTTGGGGTTTT-CCCCAGCTTCCTTCT i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3034036 80 + 135000294 TGGGCCGATGGCATAACCCTTGACCCACGTGGGCAAGTGGGCAGGTCTGCAGTTGTGGGGTTTTTCCCCCACTTCCCTTC i ponAbe2.chr2b C 0 C 0 e calJac1.Contig2838 244565 85 + 290353 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=84717.000000 s hg19.chrUn_gl000229 7491 196 + 19913 TCAGGCCTCCCTCCCTAGGAAAGCTTCACCCTGGCTGGGTCTCAGTCACCTTTTATCATGATGTTTTAGTTTCTCCGCCCTCCGGCCAGCATAGTTTCACAATGGGAATGACGTCACAGCTCTAGTCTGGGCCTTCTTAGCATTTGCCCAAAATAGAAACGCTTTCTGAAAACTAATACTTTGCTCACTTAAGATT s ponAbe2.chr2b 3034116 196 + 135000294 TCAGGCCTCCCTCCCTGGGAAAGCTTCACCCTTGCTGGGTCTCAATTACCTTTTATCATGATATTTTAGTTCCTCCGCCCTCCGGCCAGCATAGTTTCACAATGGGAAGGGCATCACTGCTCTAGTCTGGGCCTTCTTAGTATTTGCTCAAAATAGAAACGCTTTCTGAAAACTAATGCTTTGCTCATTTGAGATT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10053392 195 - 23952694 TCAGGCCTCCCTCCCTAGGAAAGCTTCATCCTGGCTGGGTCTCAATCACTTTTTATCATGATGTTTTAGTTTCTC-GCCCTCCCGCCGGCATAGTTTCACAATGGGAATGGTGTCACAGCTCTAGTCTGGACCTTCTTAGTATTTGCCCAGAATTGAAACGCTTTCTGAAAACTAATACTTTGCTCACTTAAGATT i panTro2.chrY C 0 C 0 s calJac1.Contig2838 244650 196 + 290353 TCAGGTCTCCCTCCCTAGGAAAGCTTCATCTTGGCTGGGCCTCAATCACCTTTTATCTTGATGTCTTATTTTCTCCTTCCTCTGGCCAGCATATTTGCAAAATGGGAAGGGCATCGTGGCACCACACTGGGCCATAGTAGTATTTGCCCAAAATAGAACTGCTGTCTAAAAAGTGATACTTTGCTCCCTTAAGATT i calJac1.Contig2838 I 85 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=96555.000000 s hg19.chrUn_gl000229 7687 420 + 19913 TCCAGGGACAGTGCCTTGGCCCGTGTTTGTTGGCTTGTTTTGTTTTGTTCGTGTTTTTCCTTTTTCTTTTGTATTTCTTTTTAGATGAAGTAGAAATCCCCAGTTTTCAGGAAGACGTATATTTTTCCCCAAGACATGTTAGCTGCGGTTTTCTCCTGTTGTTAACTAACGATTTTGTGAATCTCTGAACGTATAGTGAGAGCCGGTTGATGTTTACTAGACTTCAGAACATCTTATGTTCTAGAAATCCGTAAGCGATtgctgctgctgctcttgctgctgctgctgctcttgttgctgttgttgttgttgTTTTCAAAGCACAACTCGGCCACCGTTTATGGGATCAAAAGCCTTATAAAATATGTGTAATTATTTCCTGAGTGCGCCCTTCCTCCTCctc-tctctgtctctctgtct s ponAbe2.chr2b 3034312 417 + 135000294 TCCGGGGACGGTGCCTTGGCCCGTGTTTGTTGACTTGTTTTGTTTTGTTCGTGTTTTTCCTTTTTCGTATGTATATCTTTTCAGGTGAAGTAGAAATCCCCAGTTTTCAGGAAGATGTATATTTT-CCCCAGGACACGTTAGCTGCTGTTTTCTCCTGTTGTTAACTAGCGCTTTTGTGAATCTCTCAACGTGTAGTGAGAGCCGGTTGATGTTTACTATACTTCAGAACATCATATTTTCTAGAAATCCGTAAGCGAAtgctgctgttgctcttgctgctgctgttgctcttgttgctgttgt---tgttgttTTCAAAGCACACCCTGGCCGCTGTTTATGGGATCAAAAACGTTATAAAATATGTGTAATTATTTCCTGAGCATGCCCTTCCTCCTCTCCGtgtctctctgtctgtct i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10053587 413 - 23952694 TCCAGGGACGGTGCCTTGGTCCGTGTTTGTTG-----TTTTGTTTTGTTTGTGTTTTTCCTTTTTCGTATGTATTTCTTTTCAGATGAAGTAGAAATCCCCAATTTTCAGGAGGACATATATTTT-CCCCAAGACATGTTAGCTGCTGTTTTCTCCTGTTGTTAACTAGCGCTTTTGTGAATCTCTCAACGTGTAGTGAGAGCCGGTTGATATTTACTATACTTCAGAGCATCTTAT-TTCTGGAAATCCGTAAGTGAAtgctgcggctgctcttgctgctgctgctgctcttgttgctgttgttgctgttgTTTTCAAAGACCACCCCAGCCACTGTTTACAGGATCAAAAGCATTATAAAATATGTGTAATTATTTCCTGAGCACGCCCTTCCTCCTCctc-tctctgtctctctgtct i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=115059.000000 s hg19.chrUn_gl000229 8107 392 + 19913 ct--------ctttctccgtcttctctctgtctctgtctctctctc------------------------------------tctgcctatttctctctctgtctctct--gcctgtctctctcactgtgtctgtcttctgtcttactctctttcgctgcctgtctgtctctctctctctctgcctgtct---------gtctctctctctctctgcctgtctgtctctctctctctctctctccctgtctgtctctttc--tctctgtctctctctttctgtttctctctgtccatctctgtctttctctgtctgtctctctgtctgtctctctctc---------------tctgtctctctgtctctgtgtctctctctctctgcctgtctctctcactgtgtctgtcttctgtcttactctctttctcctccggcctgtctgtctctctct--------gtctctctc s panTro2.chrY 10054000 364 - 23952694 ctgtctctctctttctctgtcttctctct----ctgtctctctctc------------------------------------tctgcctatttctctctctctctctctctgcctgtctctctcactgtgtctgtcttctgtcttactccctttctctgcctgcctgtctgtctctctctct--ctgttt---------gtctgtctttcactgt------------------ctctctctctccgtgtctgtttctctccatctctgtctctgtctctct--ttctgtctgtttctctcggtctctctccctccatctct--gtctgtctctctctt---------------tctttctctttgtctttat--ctgtctctctctgcctgtttctctcactgtgtctgtcttctatcttattctctttctct----gcctgcctgtctctctct--------------ctc i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3034729 346 + 135000294 ctgtctctctatttctctgtcttctcact----------------------------------------------------------------ctctgtctgtctgtctctgcctgtctctctcactgtgtctgtcttctgtcttactccctttcacttcctgtctgtctctctctctctctgcctgtct---------gtctgtctctgtctct------------------ctctctctccatctgtctgtttc------tctctgtctctgcctctct------ttctgtttctctctgtctctctctctccatctct--gtctgtctctctttt---------------tctttctctctgtctctgt--ctgtctctctctgcctgtctttctcactgtgtctctcttctgtcttactctctttctct----gcctgtctgtctctctctctctctgtctctctctc i ponAbe2.chr2b C 0 C 0 s papHam1.Contig690014 118 430 + 683 ----ctctttctctgtctgtcttctctctctctctctctctctctctctctgtttctcactgtctctctctgtccatctctgtctgtctgtctgtctctctctctctcactgcctatttctctctctgtgtctgtcttctgtcttactctctttctcttccagtctgtctgtctgtctctct--ctgtttctctcccccgtctgtctgtttcttt------------------ctctctctctctctctctctttc------tctctgtttctctctgtct----ctctctgtccctctctgtctttgtctgtctgtctctctgtctgtctctatcttctctctctgtccatctctgtctgtctgtctgtctgtctctctctctctgcctatttctctctctgtgtctgtcttctgtcttactctctttctcttcctgtctgtctgtctgtctct--------gtctctctc i papHam1.Contig690014 N 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=16923.000000 s hg19.chrUn_gl000229 8499 62 + 19913 tctgtttctctctgtctctctctgtccgtctctgtctttctctgtctgtctctttgtctgtc s panTro2.chrY 10054364 62 - 23952694 tttgtttctctctgtctctctctgtccatctctgtctttctctgtctgtctctttgtctgtc i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3035075 62 + 135000294 tttgtttctctctgtctctctctgtccatctctgtctttctctgtctgtctccttgtctgtc i ponAbe2.chr2b C 0 I 197 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=-632.000000 s hg19.chrUn_gl000229 8561 13 + 19913 tgt-------------------ctgtgt--gtat s panTro2.chrY 10054426 34 - 23952694 tgtatctctctttcctatctcgctgtctctgtct i panTro2.chrY C 0 C 0 e ponAbe2.chr2b 3035137 197 + 135000294 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=119088.000000 s hg19.chrUn_gl000229 8574 689 + 19913 ctctctttctctgtctc----gctgtttctgtct-----------ctcttcct--gtctgtctgtctgtaggtctctctctct--------ctccctgtct---------------------------------------gtttttttctctctctct----ctgtctgtttctctgtctct----------ctgtctgtctctgcttgtctctctct--gtgtctgtcttctgtcttactgtctttctctgcctgtctgtctgtct--ctctctctctccttgtctgtttctctctct--ctttgtctctgttt------ctctctgtctccctctgtctgtctctgtctttctctctctgtc--------tctttctctatctgtctctctccttctttctctctgtctgtccat-tgtctctgtctct--------gtgtgtgtgtgtctgccttctgtcttactctctttctctgactgtctg----cctgtctgcctgtctgtctct--ctctgtctgtc--tctctctctttctgtctctgtctctctttctgtttctctctgtctctgtccatctctgtctttctctgtctgtgtctttatctg------tctgtctctctctctctttctgtctttctctctttgtgtttctttgtgt----ctctctgtctctgtctttgtctctctctcAACCGGTCTCT--------GGCTCTCGCTATCTCCCACCCTCTCTTTCTTTGCAAAATAAGTTCAAGTACATCTAATCTAATCCATTACCACAGCCTGAATTCTTAACTTTAGACATCCCACA s panTro2.chrY 10054460 782 - 23952694 ctctctctctctgtctctctcactgtgtctgtcttctgtcttattctctttctctgcctgtctgtctgttggtctctctctcttgctctctctccctgtctctctgtctgtctctctctctccctgtttttttctctcttgtttttttctctctctctttgcctgtctgtttctctgtctctgtctctctgtctctctctctctccctgtctctctctctgtgtctgtcttctgtcttact----ttctctgcctgtctgtctgtctgtctctctctctccttgtctgtttctctctctgtctctgtctctctctttctgtctctctctctccctctgtctgtctctgtctttctctgtctctt--------tctctctct--ctgtctctctctttctttatctctgtttctccatctgtctctgtctctctctctttgtgtgtgtgtgtctgccttctgtcttactctctttctctgcctgtcggtcttcctgtctgtctgtctgtctctgtctctgtctgtc--tctctctctttctgtctctatctctctttctgtttctctct----ctgtccatctctgtctttctctgt----gtctttatctg------tctgtctctctctctttttctctttgtgtatctttgtatctctctgtctgtctctctctgtctctgtctct--ctctttctTGCTCACTCTCT--------GGCTCTTGCTATCTCCCACCCTCTCTTTCTTTGCAAAATAAGTTCAAGTACATCTAATCTAATCCATTACCATGGCCTGAATTCTTAACTTTAGGCATCCCGGA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3035334 684 + 135000294 ctctgtctctctgtctc--tctctttgcctgtct-----------ctctctgt--gtctgtct-----tctgtcttactgtct--------ttctctgtct---------------------------------------gtctttctgtctctctcc----ttgtctgtttctct----------------ctctctgtctctt----tctctctct--gtgtctgtcttctgtcttactgtctttcgctgcctgtctgt--------ctctctctctccttgtctgtttctctctct--ctctgtctc-gtct------gtctgtctctctttctgtctgtttctctctctctccctctgtctgtctctgtctttctct--ctgtctgtctctctctttctctctgtctctccatctgtctctgtctctctct----ctgtgtgtgtgtctgccttctgtcttactctctttctctgcctgtctgtcttcctatctgtct------------ctctgtctgtctgtctctctctttctgcctctgtctctctttctgtttctctctgtctctgtcaa--tctgtctttctctgt----gtctttgtctgtttctctctatctttctgtctttctctctttgtgtatctttgtgtctctctttct----ctctctgtctccgtctctgtctctctctctctctctctctctcactcgctctctGGCTATCTCCCACCGTCTCTTTCTTTGCAATATAAGTTCAAGTACATCTAATCTAATCCATTACCATGGCCTGAATTCTTAACTTTAGACATCCCAGA i ponAbe2.chr2b I 197 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=42765.000000 s hg19.chrUn_gl000229 9263 90 + 19913 TTTGATCTCCCTACAGAATGCTGTACAGAACTGGCGAGTTGATTTCTGGAGTTGGATACCTCATAGATACTACATATTAATAACGATCCA s calJac1.Contig10510 24209 90 + 56837 TTTGATCTCCATACAGAATCATGTACAGAACTGGTGAGTTGATTTCTGGAGTTGGACACCTCATAGATATTACAGATTAATAAAGATCCA i calJac1.Contig10510 N 0 N 0 s ponAbe2.chr2b 3036018 90 + 135000294 TTTGATCTCCCTACAGAATGCTGTACAGAACTGGTGAGTTGATTTCTGGACTTGGATACCTCATAGATACTACATATTAATAAAGTTCCA i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10055242 90 - 23952694 TATGATCTCCCTACAGAATGCTGTACAGAACTGGCAAGTTGATTTCTTGACTTGGAAACCTCATAGATACTACATATTAATAAAGATCCA i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=5448.000000 s hg19.chrUn_gl000229 9353 24 + 19913 ACCCTAACATCCGGGGTTGCGTCT s ponAbe2.chr2b 3036108 24 + 135000294 ACCCTAAAATCTGGGGTTGTGTCT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10055332 24 - 23952694 ACCCTAAAATCTGGGGTTGCCTCT i panTro2.chrY C 0 C 0 s otoGar1.scaffold_87258.1-21092 11266 24 - 21092 ggctgagcgtggtggcttgtgact i otoGar1.scaffold_87258.1-21092 N 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=387860.000000 s hg19.chrUn_gl000229 9377 1663 + 19913 CCCTTGACTGTCTCAAAAAATCATACCTCTGTTCACCTAGGATGCTCGGAAGGTTTTCTCAATATGCATCTGCTCGTGTCCTACATGAACTGTGACTGAGCCCTGTCCATTCTGTCTCAAATATGTATCTGCAAACACGTCTCTCCACTTCCACAACTACCCATGGCCCAttgtggaaccattggctctttgaaaaaaaatcccagaagtggctttgactttttggctaggaggcctaaacctgcagagagctttcctgcccaggattctatgtgaacaaaagtGCCTCTGCTGGGAGCTGGGATCCTCGGGACCATGCTTGCTACCGCTGGATGAGTCTCTGGAAGGACACACAGGACTCCACAAAGCTGACCTGTCCCACCGAGGTCAAATGGATACCTCTGCATTGGCCCAAGGCTTCCAACTTACATCACCATCACTAACCCTCGCCATCAGCATCCTTGTGAGCCTGCCCAAGGCCTTGACTCCCGGGAGACTCTTGGGAGCCCGGTCTTCGTCGGCTAAAGTACAAAGGGATGGCGACTTCCACCCACAAGGTCCCCACTGAACTGTGAAGATGTGGAGCGTAGGTCAGAGAGGGGACCAGGAGGGGAGACGTCCTGACAGGCGATGAGTTAACTAGGCTCTGGCCACCCCACTCACGTCCCACGTCCTGGGCACCCGCGAGACACTGCCGCTTTATCCCCTTCTCTGTCCACAGCCGCCCCCACCCCACCCCGCAACCCACGCACACATGCTGGAGGTTACAAAACTACACGGCGTGAATAGAGCCTGACGGAGCGAGAGCTCATTTCACgaggtggg------ggggtg-----gggtggggtgggggttggggtgTCTGTAGAGAGCCCGATTCTACCTCGTGGGTGGCTACAGGATACAAATGAATATTGCTTCTTGGGCGGAGGGGCTTCCTTAGGCCGTCATGTTTGCGAGACTATCTCTCAAAACCTCCCTTGAGGCCACAAAACAGATTCCAACTCACCCCTCGACGTTTCCCCGGGTGCTGGATGTATCCTGTCAAGAGACCTGAGCCTGAAACGTTGAGTGAAACACCTTTATTGGCtttgtgtgtttgtttgtttctgagatgcagtcttgctctgtcccccgccccggctggagtgcagtggcatgatctcagctcactgcaacttctgcctcctgagttcgagcgattctcctgtctcagcgccaccacacctggctcatttttttatttttagtagacacgg----------tgtttcaTTGGTTTTCACTGGAGATTCTAGATTCAAGTCACACCTCACTGTGTGCCACATAATGACttctttttttttcttttctttttttttAAAAGCACAATATATCTGCTTTATTTGAGTGGCTTTATATATCGTTATAATTGTGTTATAGATGAAGAAAATATATTAAACACAGTGCTAATGATAGTGAAAGTGAAAAACAAAAGAAAGGCTATCTATTTTGTAGTTAGAATAAAGTTGCTCAGTATTTAGAGTTACCTAAATATGTCAGCATTTAA-----ACCCCTCCTAGTAAAAGCTTGCCAATCTGAATAATCCTCCTTTAAACACAATTTTTGATACGGTTAAAGTTTTTAAGAATGCGACTCCTGCAGAATAGCTGAACAGACAATACACATTTAAAAAAGAACAA s ponAbe2.chr2b 3036132 1671 + 135000294 CTCTCGACTGTCTCAAAAAGTCATACCTCTGTTCACCTAGGATTCTGGGAGGGATTTCTCAATGTGCATCTGCTCGTGTTGTACATGGACTTTGACTGAACCCTTTCCCTTCTGTCTCAAATATGTATCTGCAAACACTTCTCTCCATTTCCACAACTACCCATGGCCCAttgtggaaccactggctctttgaaaaaaa-tcccagaagtggctttggctttttggctaggaggcctaaacctgctgagaactttcctgcccaggattctgggtgaacaaaagtgcttctgctgggaGCTGAGATCCTCGGGACCATGCTTACTAGTGCTGGATGAGTCTTTGGAAGGATGCACGGGACTCTGCAAAGCTGACCTGTCCCACCAAGGTCAAATGGATACCTCTGCATTGGCCCGAGGCCTACAACTTACATCACTGTCACCA----TCACCGTCAGCATCCTTGTGAGCCTGCCCAAGGCCCTGACTCCGGGGAGACTCTTGGGATCCCGGCCTTCCTTGGCTAAAGTCCAAAGGGATAGCGACTTCCACCCACAAGGTCCCCACTGAACTGCGAAGACGTGAAGTGTAGTTCAGAGAGGGTACCAGGAGGTAAAATGTCCTGAGAGGCGATGAATTCCCTTGGCTCTGGCCACCCCACTCACATCCCACTTCCTGGGCACCCACGGGACACCACCCCTTTATCCCCTCCTCTGTCCACAGCCACCCCCACCCCACACTGCAACCCATGCACACATGCTGGAGGTTACAAAACCACACGGCGTGAATAGAGCCTGATGGAGCAAGAGCTCATTTCAtgaggcggggggggtggggtgttttggggtggggtggggATTGAGGGGTCTGTAGAGAGCCCGATTCTCCCTCGTGGGTGGCTACAGGATACAAATGAATATCGCTTCTTGGGCAGAGGGGCTTCCTTAGGCCCTCACGTTTGCGGGACTATCTCTCAAACCCTTCTTTGAGGCCACAAAATAGATTCCGCCCCACCCCTCTATGTTTCCCCAGGTGCTGGATATATCCTGTCAAGAGACCTGAGCCTGACATGTTGAGTGAAACACCTTTATTGGCTTTGTGTGtttgtttgtttctgagatggagtcttgctctctaccgc---ccggccggagtgcagtggcatgatttcaactcactgcaacctctgcctcctgtgttccagtgattctcctacctcagcgccaccacacccggcacatttttttatttttagtagacacggggtttgaccctgttTCATTGGTTTCCACTGGAGATTCTAAATTCGAGTCACACCTCATTGTGTGCCACATAATGACttcttttttttcttttttctttttttttAAAGCACAATATGTCTGCTTTATTTGAGTGGCTTTATATATCGTTATAATTGTGTTATAGATGAAGAAATGGTATTAAACACGGTGATAATGATAGTGAAAGTGAAAA-CAAAAGAAAGG----CTATTTTACAGTTAGAATGAAGTTGCTCAGTATTTAGAGTTACCTAAATACGTCAGCATTTAA-----ACTCTTCCTAGTAAAAGCTTGCCGATCTGGATAATCCTTCTTTAAACAAAATTTTTGATACGGTTAAGTTTTTTAAGAATCCACCTCCTGCAAAATAGCTGAACAGACCATACACATTTAAAAAAGAACAA i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10055356 1659 - 23952694 CCCTCGACTGTCTCAAAAAGGCATACCTCTGTTCACCTAGGATGCTGGGAGGGTTTTCTCAATGTGCATCTGCTCGTGTCCTACATGACCTGTGACCAAGCCCTGTCCGTTCTGTCTCAAATGTGTATCTGCAAACACTTCTCTCCATTTCCACAACTACccacagcccattgtggaaccactggccctttgaaaaaaa-tcccagaggtagctttggctttttggctaggaggcctaaacgtgctgagaactttcttgcccaggatcctgtgtgaacaaaagtGGCTGTGCTGGGAGCTGGGATCCTTGGGACCATGCTTGCTAGTGCTGGATGAGTCTCTGGAAGGAAGCACGGGACTCCGCAAAGCTGACTTCTCCCACTGAGGTCAAACGGATACCTCTGCATTGGCCCAAGGCCTCCAACTTACATCACCATCATCA----TCACTGTCAGCATCCTTGTGAGCCTGCCCAAGGACCCGACTCCGGGGAGACTCTTGGGAGCCCGGCCATCCTCGGCTAAAGTCCAAAGGGATGGCGACTTCCACCCACAAGGTCCCCACTGAACTGCAAAGATGTGGAGCATAGGTCAGAGAGGGGACCAGGAGGGGAGGCGTCCTGACAGGCGATGAGTTCCCTAGGCTCTGGCCACCCCACTCACGTCCCACGTCCCGGGCACCCATGGGACACTGCCGCTTTATCGCCTCCTTTGTCCACAGCCGGCCTCACCCCATCCTGCAACCCAGGCACACACGCTGGAGGTTACAAAACCACTTGGCGCGAATAGAGCCTGACGGAGGGAGAGCTCATTTCACTAGGCAGA------ggggtgcggtggggtggggtggggGGTGGGGGGTCTGTAGAAAGCCTGATTCTCCCTCGTGGGTGGCTACAGGATGCAAATGAATATCGCTTCTTGGACGGAGGGGCTTCCTTAGGCCATCACGTTTGCGGGGCTATCTCTCAAACCCTTCCTTGAGGCCACAGAATAGATTCCACCACACCCCTCGACGTTTCCCCAGGTGCTGGATGTATCCTGTCAAGAGACCTGAGCCTGACACATTGAGTTAAACACCTTTATTGTCTTTGTGTGtttgtttgtttctgagatggagtcttgttctgtccccc---ccggctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcctgggttccagcgattcttctgcctcagcgccaccatgcccgactcatttttttatttttagtagacatggggtttgaccctgttTCATCGGTTTTCACTGGAGATTATAGATTCGAGTCACACCTCATTGTGTGTCACATCATGACTTCTTTTTTTTTTT---------------AAGCAAAATATATCTGCTTTATTTGAGTGGCTTTGTGTATCGTTATAATTGTGTTATAGATGGAGAAAAGGTATTAAACACGGTGATAATGACAGTGAAAGTGAAAA-CAAAAGAAAGTCTATCTATTTTGTAGTTAGAATAAAGTTGCTCAGTATTTAGAGTTACCTAAATAAGTCAGCATTTAATAAATAAGTCTCCTAGTAAAAGCTTGCCGATCTGAATAATCCTCCTTTAAACACAATTTTTGATATGGTTAAGTTTTTTAAGAATGTGGCTCTTGCAAAATAGCTGAACAGACAATACACATTTAAAAAAGAACAA i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=3110.000000 s hg19.chrUn_gl000229 11040 24 + 19913 CACAAGGATCAA------------CCAGACTTGGGA--------------------- s panTro2.chrY 10057015 24 - 23952694 GACAAGGATCAA------------CCAGACTTGAGA--------------------- i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3037803 24 + 135000294 CACAGGGATCAA------------CCAGACTTCGGA--------------------- i ponAbe2.chr2b C 0 C 0 s choHof1.scaffold_119345 7338 57 + 8077 CATAAGGACCAAACTCCACTTTGTCTAGTTTATGGATGGATGTGTAGAAAAGTAGGG i choHof1.scaffold_119345 N 0 I 11 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=2095.000000 s hg19.chrUn_gl000229 11064 28 + 19913 AAAATTAAA---AAACAACA-------------------------------------CAAGTCTTATG s panTro2.chrY 10057039 28 - 23952694 AAAAATCAA---AAACAACA-------------------------------------CAAGTCTTATG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3037827 28 + 135000294 AAAAATCAA---AAACAACA-------------------------------------CAAGTCTCATG i ponAbe2.chr2b C 0 C 0 s proCap1.scaffold_140 10895 28 + 169662 ATATTTAAA---AACCAGTG-------------------------------------CTGATCTTGTT i proCap1.scaffold_140 N 0 N 0 s choHof1.scaffold_119345 7406 68 + 8077 ACAGACAAAGGTACCCAGTGTTTTTTTTAATTCAATTGCTCTTTTTCACTCTAATTATTATTCTTGTT i choHof1.scaffold_119345 I 11 I 21 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=4702.000000 s hg19.chrUn_gl000229 11092 33 + 19913 --------AAGAACTGAGT--TCTTAAAATATTACGGATAACA s panTro2.chrY 10057067 33 - 23952694 --------AAGAACTGAGT--TCTTAAAATATTATGGAGAACA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3037855 33 + 135000294 --------AAGAACTGAGT--TCTTAAAATAATACGGAGAACT i ponAbe2.chr2b C 0 C 0 s choHof1.scaffold_119345 7495 43 + 8077 AAGGTATCAGGGATtgatttaggtgatgaatgtacaactatgt i choHof1.scaffold_119345 I 21 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=23545.000000 s hg19.chrUn_gl000229 11125 77 + 19913 TAGCTATCAGAAGAGAAGGCTGTATTGGTAAGTTGATTGTTACAT-----------------------------------TTGTCAGCAAAAGCTAGCACTATTTTTTTTTG s micMur1.scaffold_41438 1672 110 + 7715 CAACTATCTGAAGAGAAGGCAGTATAGCAATCTTTACTATTTCATGTAAAGATAGCTAGTATCTTTCAGTAAAAGCTTACTTTTCAGTAAAAGCTAGCATT--TTTTTTTTT i micMur1.scaffold_41438 N 0 M 1257 s panTro2.chrY 10057100 75 - 23952694 TAGCTATTGGAAGAGAAGGCAGTATTGGCAAGTTGATTGTTACAT-----------------------------------TGGTCAGCAAAAGCTAGCACT--TTTTTTTTG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3037888 75 + 135000294 TAGCTATCAGAAGAGAAAGCAATATTGGCAAGTTGATTGTTATAT-----------------------------------TTGTCAGCAAAAGCTAGCACT--ACTTTTTTG i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=14541.000000 s hg19.chrUn_gl000229 11202 67 + 19913 GCAATCTCTCAGGCACTGCAACTACTACTGCAAAATGAGATATAATCCATTAAACAACATACTCACA s panTro2.chrY 10057175 67 - 23952694 GCAACCTTTCAGGCACTGCAACTACTGCTGTAAAATGAGATAGAATCCATTAAACAACATATTCACA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3037963 60 + 135000294 GCAATCTTTCAGGCACTGCAACTACT-------AATGAGATATAATACATTAAACAACATATTCACA i ponAbe2.chr2b C 0 C 0 e micMur1.scaffold_41438 1782 1257 + 7715 M e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=10953.000000 s hg19.chrUn_gl000229 11269 21 + 19913 AATGAAAAAATGTTTTAGTAA s calJac1.Contig700 433475 21 + 634489 AATCAAAAAATGTTTTAGTAA i calJac1.Contig700 N 0 N 0 s ponAbe2.chr2b 3038023 21 + 135000294 AATCAAAAAATGTTTTAGTAA i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10057242 21 - 23952694 AATCAAAAAATGTTTTAGTAA i panTro2.chrY C 0 C 0 e micMur1.scaffold_41438 1782 1257 + 7715 M e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=32774.000000 s hg19.chrUn_gl000229 11290 165 + 19913 TATAATGCTTCAGATTTAGAAGCAAATCAAGTGTTAAAACTCAACTGTTATAATAATTAACCCCAAAGATAACCGTATCTGACAAAAAGGCTTCCACAGAGTTATGACTTCAGAATTATACTTTCTCTTGATAtttatttattttattttattttattttatttt s ponAbe2.chr2b 3038044 145 + 135000294 TATAATGCTTCAGATTTAGAAGCAAATCAAGTGATAAAACTCAACTGCTATAATAATTAACCCCAAAGATAACCGTATCTGACAAAAAAGCTTCCACAGAGTTATGACTTCAGAACTATACTTTCTCTTGATAAttatttattta-------------------- i ponAbe2.chr2b C 0 I 23 s panTro2.chrY 10057263 153 - 23952694 TATAATGCTTCAGATTTAGAAGGAAATCAAGTGATAAACC---ACTGCTATAATAATTAACCCCAAAGATAACCCTATCTGACAAAAA--CTACCACAGAGTTATGACTTCAGAATTATACTTTCTCTTGAtatttatttattta-------tttattttattgt i panTro2.chrY C 0 C 0 e micMur1.scaffold_41438 1782 1257 + 7715 M e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=1364.000000 s hg19.chrUn_gl000229 11455 22 + 19913 attttattttatttcattttat s panTro2.chrY 10057416 14 - 23952694 attttattgtattt-------- i panTro2.chrY C 0 C 0 s micMur1.scaffold_41438 3062 22 + 7715 attccatttttttttgttatgt i micMur1.scaffold_41438 M 1257 N 0 e ponAbe2.chr2b 3038189 23 + 135000294 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=63446.000000 s hg19.chrUn_gl000229 11477 292 + 19913 tttatttttttcttgagatggtttcttgctctgttgcccaggctggtgtgcaatggcataatcttggctcactgcaacctccacttcccgg-ttcaagcgattttcctgcctcagcctcctgagtatctgggactacaggcgcccgccaccattcccagctaa-tttttatacttttaatagatacggggtttcgccatgttggccagcatggtctcgatctcttgaccttgtgatccacccgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgtgcctggc s ponAbe2.chr2b 3038212 293 + 135000294 tttacttttttcttgcgatggcgtctcgctctgtcacccaggctggagtgcaatggcacaatctttg-gcactgcaacatccacttcctgggttcaagcgattatcgtgcctcagcctcctgagtagctgggactatgggcgcccaccactatgaccagctaattttttatacttttaatagagaagtggtttcaccatgttggccagcatggtctcaatctcttgatcttgtgatctgcctgctttggcctccctaagtgctggaatgacaggcataagccaccgtgcctggc i ponAbe2.chr2b I 23 C 0 s panTro2.chrY 10057430 289 - 23952694 ----tttttttcttgagacagcgtctcactctgtggcacaagctggagtgcaatggcgtaatcttggctcactgcaacatccacttcctgggttcaagcgattctcctgcctcagcctcccgagtagctaagactacaggcatctgccaccatgcccagctaa-tttttatacttttaatagagacggggtttcaccatgttggccaggatggtctcaatctcttgaccttgtgagccacctgcctcggcctcccaaagtgctgggatgacaggcatgagccaccgtgcctgac i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=52746.000000 s hg19.chrUn_gl000229 11769 223 + 19913 cTTCTCTTGATA-TTTAAACTTTTAAGTCAGTCCAGAAAAATACAATAAATG--TCAACAGTAATTATAGTGTTGAGGTAGAAGT---AGGACCAAACTTT-TTCATATGTTATTCAGTTGATAACAATATGACCTGGGTAGTAATTTCCTATGTCTCTACTTATACACAAGTACAAAAAAGTAAAACAGAGATACTGC-----TAAATAAAAGGGTACACTTAGTTCCTAATAG s panTro2.chrY 10057719 220 - 23952694 ATTCTCTTGATA-TTTAAACTTTTAAGTCAGTCCAGAAAAATACAATAAATG--TCAACAGTAAGTATGGTGTTGAGGCAGAAGT---AGGACCAAAATTT-TTCAT--GTTATTCAGTTGATAACAATATGACCTGG-TAGTAATTTCCGATGTGTCTACTTATACCCAAGTACAAAAAAGTAAAATAGAGATACTGC-----TAAATAAAAGGGTACACTAAGTTCTTAATAG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3038505 223 + 135000294 cTTCTCTTGATA-TTTAAACTTTTAAATCAGTCCAGAAAAATACAATAAATG--TCAGCATTAAGTATGGTGTTGAGGCAGAAGT---AGGACCAATCTTT-TTCATATGTTATTCAGTTGATAACTATATGACCTGGGTAGTAATTTCCTATCTGTCTACTTATACACATATACAAAAAAGCAAAACAGAGACACTGT-----TAAATAAAAGCGTACACTAAGTTCTTAATAG i ponAbe2.chr2b C 0 C 0 s macEug1.Scaffold3757 13161 202 - 55837 CTTCCCCTTATAGTTTGGTCCAATAACTCAATCAGGAAAA--ACAGTAAGTAATTTGGCTGACAATACAGTGCTGAGGAAgtagtgaaaaaacaaaaatctattcttatattttta-------aaaaataaga-ctggaaag---------aactGTTTCCCCAAGGAataacaaagaaagcaaaaacatagATGCCAtagaagtaaataaaa------attaaatg-------- i macEug1.Scaffold3757 N 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=9247.000000 s hg19.chrUn_gl000229 11992 19 + 19913 TA--ACTCAATAAACTGGAAC s vicPac1.scaffold_1211 435608 21 + 538489 TAGTACTTAATAAGCTGGAAC i vicPac1.scaffold_1211 N 0 N 0 s ponAbe2.chr2b 3038728 19 + 135000294 TA--ACTCAATAAACTGGGAC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10057939 19 - 23952694 TA--ACTCAATAAACTGGAAC i panTro2.chrY C 0 C 0 s macEug1.Scaffold3757 13363 15 - 55837 ------tcatTTAGTTGGAAC i macEug1.Scaffold3757 C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=8920.000000 s hg19.chrUn_gl000229 12011 41 + 19913 ACTGTCAAAAAGCAGCAACTAGTGAATTTTTTCA------------GTGATTT s panTro2.chrY 10057958 41 - 23952694 ACTGTCAAAAAGCAGCAACTAGTGATTTTTTTCA------------GTGTTTT i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3038747 41 + 135000294 ACTGTCAAAAAACAGCAACTAGTGAATTTTTTCA------------GTGTTTT i ponAbe2.chr2b C 0 C 0 s macEug1.Scaffold3757 13378 40 - 55837 -------CACATCAGGAAT------ATTTTTCCATATAGTTGAGCTGCAATTT i macEug1.Scaffold3757 C 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=84616.000000 s hg19.chrUn_gl000229 12052 345 + 19913 TTTCTATTATCCAATAAGTGAATTATGCTATTCCTTTCCAATTTCCCAAGCACTTTTTGTCTCAATCACCATTTCTGTGTTCGAAGAAAAAGTAACAAATCAAGTAACAAAACTaaacaagcaaacaaacaaacaaaACACAACTAGAGCATCTGCAAAAGTTTGGTAGAAGACTGAAACTCTTGAGTATAAGGATCTGGTATTCTATTATCATTAGTTAACTTAAGAGTTTGTTAAAGGCATACATTTCATAAGAAAGCGTGTTAGTTTGAAGTTATTGACCAGTATGTACCATCCCTAAGTATTAGTAACCAAATTCATGACAATAAAGAGCTATCTAACAAG s panTro2.chrY 10057999 341 - 23952694 TTTCTATTACCCAGTAAGTGAATTATGCTATTCCTTTCCAATTTCCCAAGCACTTTTTGTCCCAATCACCATTTATGTGTTCGAAGAAAAAGTAGCAAATCAATTAACAAAACTAAACAAGCAAACAAACAAA----ACCCAACTATGGTATCTGCAAAAGTTTGGTAGAAGACTGAAACTGCTGAGTGTAAGGATCTGGTATTCTATTATCATTAGTTAAATTAAGAGTTTGTTAAAGACATTCATTTCATAAGAAAACATGTTAGTTTGAAGTTATTGAACAGTATGTATCACCCCTAAGTATTATTAACCAAATTCAGGAAAATAAAGAACTATCTAACAAG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3038788 345 + 135000294 TTTCTATTATCCAATAAGTGAATTATGCTATTCCTTTCCAATTTCCCAAGCACTTTTTGTCCCAATCACCATTTCTGTGTTCGAAGAAAAAGTAACAAATCAAGTAACAAAACTAAACAAGCAAACTAACAAACAAACCACAACTACGGTATCTGCTAAAGTTTGGTAGAAGAATGAAACTGTTGAGTATAAGGATCTGGTATTCTATTATCATTAGTTAACTTAAGAGTTTGTTACAGACATACATTTCATAAGAAAACATGTTAGTTTGAGGTTATTGACCAGTATGTACCATCCCTAAGTATTAGTAACCAAATTCATGACAATAAAGAGCTATCTAACAAG i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=9161.000000 s hg19.chrUn_gl000229 12397 49 + 19913 AAAAATTAGTGACTACCAGCACCATCAACAAGACTTTGTCTTTACACTT----- s ponAbe2.chr2b 3039133 48 + 135000294 AAAAATTAGTGACT-TTAGCACCATCAACAAGACTTTGTCTTTACATTT----- i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10058340 49 - 23952694 AAAAATTATTGACTACCAGCACCATCAACAAGACTTTGTCTTTACACTT----- i panTro2.chrY C 0 C 0 s oryLat2.scaffold697 11666 49 + 117618 AAACatatgcacacactcacaccacCCA----AATGTGTCCAT-CAGTTGCTGT i oryLat2.scaffold697 N 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=298512.000000 s hg19.chrUn_gl000229 12446 138 + 19913 CATTACCA-CTTACCATGCATTATAATGTCTAGGATTGACTCTGATAGCATTTCGAAAACTAGCTAATGCTTTGTCCAATTCTTCAGTTAAGACAAACTCATTCCCTAATAGAGTATAGGCATAAGCATAATCTGGATC s fr2.chrUn 68211192 138 - 400509343 CATGGTTA-CATACCAGGCATTATAGTGTCTGCTGTTTACTCTGATGGCGTTTCGAAAGCAGGCAAGTGCTCTGTCCAACTCCTCTGTCAGAACAAACTCGTGACCCAGCAGAGTGTAAGCATAAGCAAAGCCTGGGTC i fr2.chrUn N 0 I 96 s oryLat2.scaffold697 11715 136 + 117618 ---GGTTACCATACCAGGCATTGTAGTGTCTGCTGTTTACTCTGATGGCATTTCTGAAGCAAGCGAGAGCCCGGTCCAGCTCCTCAGTCAGAACAAACTCGTGACCCAATAGAGTGTACGCATATGCGAAACCGGGGTC i oryLat2.scaffold697 C 0 I 32326 s panTro2.chrY 10058389 137 - 23952694 CATTACCA-CTTACCATACATTATAATGTCTAGGATTGACTCTGATAGTATTTCAAAAACAAGCTAATGCTTTGTCCA-TTCTTCAGTTAAGACAAACTCATGCCCTAATAGAGTATAGGCATAAGCATAATTTGGATC i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039181 137 + 135000294 CATTACCA-CTTACCATGCATTATAATGTCTTGGATTTACTCTGATAGCATTT-AAAAACAAGCTAATCCTTTGTCCAATTCTTCAGTTAAGACAAACTTCTGCCCTAATAGAGTATAGGCATAAGCATAATTTGGATC i ponAbe2.chr2b C 0 C 0 s petMar1.Contig1766 26335 133 + 38963 -----CTA-CTCACCATGCATTGTAGTGGCGAGGGTTGATGCGGATGGCGTTGCGGAAGCACGCCAGGGATTTCTCGAGCTCTTCGATGAGCGCCAGCTCATGGCCCAGCAGCGTGTAGGCATAGGCAAAGCTGGGGTC i petMar1.Contig1766 N 0 C 0 s gasAcu1.chrXI 16059617 130 + 16706052 ---------CGTACCAGGCGTTGTAGTGTCTGTTGTTAACTCTGATGGCGTTGCGGAAACAGGCGAGTGCTCTGTCCAACTCCTCCGTCAGAACAAACTCATGACCCAACAAGGTGTAGGCGTAGGCAAAGGCTGGGTC i gasAcu1.chrXI N 0 I 68 s xenTro2.scaffold_155 305185 130 - 2240893 ---------CTCACCAGGCATTGTAGTGTCTGGGGTTGACTCGGATGGCATTTCTGAAACATGCCAATGCTTTGTCCAGCTCCTCGGTCAGTACGAACTCGTGCCCAAGTAGAGTAAACGCGTAGGCATAACCTGGATC i xenTro2.scaffold_155 N 0 C 0 s tetNig2.chrUn_random 60211139 131 + 107808587 -------A-CATACCAGGCATTATAGTGTCTGCTGTTTACTCTGATCGCGTTACGAAAGCAGGCAAGTGCTCTGTCCAACTCCTCTGTCAGAACAAACTCATGCCCCAGCAGAGTGTAAGCATAAGCAAAGCTCGGGTC i tetNig2.chrUn_random N 0 I 245 s danRer6.chr3 18563272 131 + 60907308 -------A-CATACCAGGCATTGTAGTGACGTTTATTGAGGCGTATAGCATTGCGGAAGCAACCCAGGGCTTTCTCCAGCTCCTCTGTGAGAACCAGTTCATGCCCTAATAGTGTATAAGCGTAAGCAAAGCTGGGGTC i danRer6.chr3 N 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=244940.000000 s hg19.chrUn_gl000229 12584 83 + 19913 CACTTGGATAGCTCTCTGGAAGAATTTAATTGCAATATCGTATTCCTGTTGCAGACTGAAACAGTTCCCTGCAGCACACCAGG s panTro2.chrY 10058526 83 - 23952694 CACTTGGATAGCTCTCTGGAGGAATTTAATTGCAATATCGTGTTCCTGTTGCAGACTAAAACAGTTCCCTGCAGCACACCAGG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039318 83 + 135000294 CACGTGGATAGCTCTCTGGAAGAATTTAATTGCAATATCGTGTTCCCATTGCAGACTGAAACACTTCGCTGCAGCACACCAGG i ponAbe2.chr2b C 0 C 0 s xenTro2.scaffold_155 305315 83 - 2240893 CACTTGAATGGCCCTCTGGAAGAACTTTATTGCAATGTCATGTTCCCTTTGTAAACTGAAGCAGTTTCCAGCTGCACACCAAG i xenTro2.scaffold_155 C 0 I 610 s tetNig2.chrUn_random 60211515 83 + 107808587 CACCTGGATTGCTCTCTGGAAGAATTTGATGGCAATATCATGTTCCCTCTGTAGACTGAAACAGTTTCCTGCGACACACCAAG i tetNig2.chrUn_random I 245 I 121 s fr2.chrUn 68211426 83 - 400509343 CACCTGGATTGCTCTCTGGAAGAACTTGATGGCAATATCATGCTCCCTCTGAAGGCTGAAACAGTTTCCTGCGACACACCAAG i fr2.chrUn I 96 I 218 s gasAcu1.chrXI 16059815 83 + 16706052 CACCTGAATAGCTCTCTGGAAGAACTTGATGGCGATGTCATGCTCTCTTTGCAGACTGAAACAGTTTCCTGCTACACACCAGG i gasAcu1.chrXI I 68 I 244 s oryLat2.chr4 10742314 83 - 34636364 CACCTGAATGGCTCTCTGGAAGAACTTGATAGCGATGTCGTGCTCTCTCTGAAGACTGAAGCAGTTTCCTGCTACACACCAGG i oryLat2.chr4 n 32326 I 77 s danRer6.chr3 18563403 83 + 60907308 CACCTGGATGGCCCGTGTGAAGAACTTAATGGCGATGTCATGCTCCCGCTGTAAGCTGAAACAGTTACCAACTACACACCAGG i danRer6.chr3 C 0 I 96 s petMar1.Contig1766 26468 83 + 38963 CACCTGGATCGCTCGCTGGAAGAATTTGATGGCAACGTCGTGCTCACGCTGCAGGCTGAAGCAGTTGCCCGCTGTGCACCACG i petMar1.Contig1766 C 0 I 1181 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=295551.000000 s hg19.chrUn_gl000229 12667 151 + 19913 CCTCTGGCAAATTTTTATCCATGTCTGTTAAGTCTTTTGACAGAAATGAAAGAGCAACATCTTTTTGAAGATACCAAAGTGTTGTAGAGTAGATTTCCATGGCTTCGACT--ATAATTCTCAATCCTTCTAACCTCTGAGAATATTCTTTCAG s panTro2.chrY 10058609 153 - 23952694 CCTCTGGTGAATTTTTATCCATGTCTGTTAAGTCTTTTGACAGAACTGAAAGAGCAACATGTTTTTGAAGATGCCAAAGTGTTGTAGAGTAGATTTCCATGGCTTTGACTCTATAATCCTCAATCCTTCTAACCTCTGAGAATATTCTTTCAG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039401 153 + 135000294 CCTCTGGCGAATTTTTATCCATGTCTGTTAAGTCATTTGACAGAACTGAAAGAGGAACATCTTTTTGAAGATGCCAAAGTGTTGTAGAGTAGATTTCCATGCCTTCGACTCTATAATTCTCAATGCTTCTAACCTCTGAGAATATTCTTTCAG i ponAbe2.chr2b C 0 C 0 s xenTro2.scaffold_155 306008 153 - 2240893 CCTCTGGAGAGTTCTTGTCCATATCTGTCAGGTCCTTGGAAAGTACAGACAAGGTCACATCCTTCTGCAAATGCCACAAAGTAGTTGAGTAGATCTCCATGCCTTCTACTCGATAGCTCTCAATTCTCCGCACCTCGGAGAACACTCGTTCAG i xenTro2.scaffold_155 I 610 I 115 s tetNig2.chrUn_random 60211719 153 + 107808587 CCTCAGGACAGTCCTTGTCCATGTCAGTCAGGTCTTTAGACAAAGCAGACAGGGCAACATCCTTCTGCAGGTGCCAGAGAGTGGTCGAATAAATCTCCATTCCTTCAACTCTGTACGACTCGATCCTGCGAACCTCACTAAACAGACGCTCTG i tetNig2.chrUn_random I 121 I 76 s fr2.chrUn 68211727 153 - 400509343 CCTCAGGACAGTTCTTGTCCATGTCGGTCAGGTCTTTGGACAGAGCAGACAGGGCAACATCCTTCTGCAGGTGCCACAGAGTGGTTGAATAAATCTCCATTCCTTCAACTCTGTACGACTCGATCCTGCGAACCTCACTGAACAGACGCTCTG i fr2.chrUn I 218 I 72 s gasAcu1.chrXI 16060142 153 + 16706052 CCTCGGGACAGTTCTTGTCCATGTCAGTCAGGTCCTTGGACAGGGCGGACAGCGCCACGTCTTTCTGTAGGTGCCACAGTGTTGTTGAATAAATCTCCATTCCTTCAACTCTGTAAGACTCGATCCTTCGAACCTCACTGAACAGACGCTCCG i gasAcu1.chrXI I 244 I 768 s oryLat2.chr4 10742474 153 - 34636364 CCTCGGGGCAGTTCTTGTCCATATCAGTGAGATCTTTGGACAGAGCAGATAGGGCAACATCTTTCTGCAGGTGCCACAGTGTGGTGGAGTAGATTTCCATTCCCTCCACCCGGTATGACTCAATCCGTCGAACCTCACTGAACAGACGCTCTG i oryLat2.chr4 I 77 I 94 s danRer6.chr3 18563582 153 + 60907308 CCTCAGGTGAGTTTTTGTCCATGTCAGTGAGGTCTTTAGATAGGGCAGAAAGTGCCACATCCTTTTGTAAATGCCAAAGTGTTGTTGAGTAGATGTCCATACCCTCTACTCGATAGCTCTCTATACGTCGGACTTCTGAAAAAATCCTCTCCG i danRer6.chr3 I 96 I 25 e petMar1.Contig1766 26551 1181 + 38963 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=331363.000000 s hg19.chrUn_gl000229 12818 145 + 19913 CTTGCATGGAC--------------TCTGAAAGTT------------------------------------------------CAAAATAGG----------------------------------CCCTTCCAATTTGGCACAGTACCCAACCAGTATTGTAGTGGTGAGAAGGTAAATGGCTCAAAATATTTATAGCTTCTTTGCAGTGGTATGAACACAAAGCTAAATAACCTTCCCC- s panTro2.chrY 10058762 145 - 23952694 CTTGCATGTAC--------------TCTGAAAGTT------------------------------------------------CAAAATAGA----------------------------------CCCTTCCAATTTGGCACAGTACCCAACCAGAATTGTAGTGGTGAGAAGGTAGATGGCTCAAAATATTTATAGCTTCTTTGCAGTGGTATGAACACAAAGCTAAATAACCTTTCCC- i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039554 145 + 135000294 CTTGCATGTAC--------------TCTGAAAGTT------------------------------------------------CAAAATAGA----------------------------------CCCTTCCAATTTGGCACAGTACCCAACCAGTATTGCAGTGGTGAGAAGGTAGATGGCTCAAAATATTTATAGCTTCTTAGCAATGGTATGAACACAAAGCTAAATAACCTTTCCC- i ponAbe2.chr2b C 0 C 0 s tetNig2.chrUn_random 60211948 145 + 107808587 CCTGTGTGTAT--------------TCAGCCAGTT------------------------------------------------CAAAGTAAG----------------------------------CTCTGCCAATATGTGTGAGCACCCAGCCTGTGTTGTAATGCTGAGGTGGGAGTGAGGAGAGAATGTTGATAGCTTCTCTGCAGTTGTACGAGCACAGCGCGAGATAGCCACGCCC- i tetNig2.chrUn_random I 76 I 1 s fr2.chrUn 68211952 145 - 400509343 CCTGTGTGTAT--------------TCAGCCAGTT------------------------------------------------CAAAGTAAG----------------------------------CTCTGCCAATGTGTGTGAGGACCCAGCCAGTGTTGTAGTGCTGAGGTGGCAGCGAAGTCAGGATGTTGATAGCTTCTCTGCAGTTGTACGAGCAGAGCGCCAGGTAGCCACGCCC- i fr2.chrUn I 72 I 1 s gasAcu1.chrXI 16061063 145 + 16706052 CCTGCGTGTAC--------------TCGGCCAGCT------------------------------------------------CAAAGTAAG----------------------------------CCCTGCCGATGTGAGTGAGGACCCAGCCGGTGTTGTAGTGCTGAGGAGGCAGCGAGGTCAACATGTTGATGGCTTCTCTGCAGTTGTACGAGCACAATGCCTGGTAACCGCGTCC- i gasAcu1.chrXI I 768 I 1 s oryLat2.chr4 10742721 145 - 34636364 CCTGTGTGTAC--------------TCGGCCAGCT------------------------------------------------CAAAGTAGG----------------------------------CTTTTCCAATGTGAGTAAGCACCCAGCCAGTGTTGTAGTGCTgggggggTAGCGAGGTTAGTATGTTGATGGCTTCTCTGCAGCTGTAGGAGCACAGCGCCTGGTAGCCCCGCCC- i oryLat2.chr4 I 94 I 273 s danRer6.chr3 18563760 241 + 60907308 TCTGTGAGAACAAACAAAAACATTTTCCACTACTTGCCATTATAATTTGAATGCCTTTGGTAATTGATTTCACCTCATTTCTGCAACGCAGACTCACCTGCATGTATTCAGCCAGTTCAAAGTGTGCTCGCCCGATCTGACCCAGCACCCAGCCCGTGTTGTAATGGTGTGAAGGTAGCTGACTCAAGATGTTAATGGCCTCTCGGCAGTTATAAGAGCAGAGAGCAAGATATCCCCTCCC- i danRer6.chr3 I 25 I 1 s eriEur1.scaffold_224038 11141 120 + 14063 ---------------------------------------------------------------------------------------ATAGG----------------------------------CCCGTCCAATCTGGCACAGCACCCAGCCAGTACTGTAGTGGTGAGAAGGCAGGTGGCTCAGGATGCTGATGGCCTCTTTGCAGTTGTAGGAGCACAGAGCTAGGTAACCTTTCCC- i eriEur1.scaffold_224038 N 0 C 0 s xenTro2.scaffold_155 306276 136 - 2240893 ---------AC--------------TCTGCAAGCT------------------------------------------------CAAAATAGG----------------------------------CACGGCCAATCTGGCACAAGACCCAGCCAGTGTTGTAGTGATGAGATGGGAGATGACTCAGTATATTTATAGCCTCCTTGCAGTTGTAAGAGCACAAAGCCACATAACCCTTCCC- i xenTro2.scaffold_155 I 115 C 0 s petMar1.Contig1766 27732 146 + 38963 CCTGTGTGTAC--------------TCTGCCAACT------------------------------------------------CATAATGTG----------------------------------CCTTTCCAAGCTGACCCAGAACCCAGCCTGTGTGATAGTGGTGGGGTGGGAGTTCACTCAGCAAGTTGATGGCCTCCTTGCAGTTGTACGAACACAGTGCAGAGTAGGCCTTCCCC i petMar1.Contig1766 I 1181 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=19618.000000 s hg19.chrUn_gl000229 12963 33 + 19913 CTTT-CACGAAGAAGGCTCATCAAGTCTTCTGCT s panTro2.chrY 10058907 34 - 23952694 CTTTTCAGGAAGAAGCCTCATCAAGCCTTCTGCT i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039699 34 + 135000294 CCTTTCATGAAGAAGGCTCATCAAGCCTTCTGCT i ponAbe2.chr2b C 0 C 0 s xenTro2.scaffold_155 306412 29 - 2240893 CATATCCCTTAAGAGACTCATCAAACCTT----- i xenTro2.scaffold_155 C 0 I 163 s eriEur1.scaffold_224038 11261 31 + 14063 CATGTCACGAAGGAGGCTCATCAAACCTTCT--- i eriEur1.scaffold_224038 C 0 I 134 s tetNig2.chrUn_random 60212094 30 + 107808587 -AGTTCTCGAAGCAACGCCATCACActgt---ct i tetNig2.chrUn_random I 1 N 0 s fr2.chrUn 68212098 30 - 400509343 -AGTTCTCGGAGCAATACCATCACGctgt---ct i fr2.chrUn I 1 I 483 s gasAcu1.chrXI 16061209 30 + 16706052 -AGTTCCCGTAGCAACGCCATCACACTGT---CT i gasAcu1.chrXI I 1 I 44 s danRer6.chr3 18564002 28 + 60907308 -ATATCCCGCATCAGGGTCATCAGCCCGT----- i danRer6.chr3 I 1 I 2500 s petMar1.Contig1766 27878 31 + 38963 -ATTTCCCTGAGGAGGCTCATTAGCCCTTCtg-- i petMar1.Contig1766 C 0 I 179 e oryLat2.chr4 10742866 273 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=16937.000000 s hg19.chrUn_gl000229 12996 72 + 19913 GCTGCTTTTTGTAGACTAAAAGCCTGAATCTGAGGT---------------------------GTGATTGTG---------GATAT--------------TTTCCCTTCTGAAATGATGGAA s panTro2.chrY 10058941 71 - 23952694 GCTGCTTTTTGTAGATTAATA-CCTGAATCTCAGGT---------------------------GTGATTGTG---------GATAT--------------TTTCCCTTCTGAATTGATGGAA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039733 72 + 135000294 GCTGCTTTTTGTGGATTAAAAGCCTGAATCTTAGGT---------------------------GTGATTGTC---------GATAT--------------TTTCCCTTCTGAAATGATGAAA i ponAbe2.chr2b C 0 C 0 s eriEur1.scaffold_224038 11426 72 + 14063 GCTGCTTTCTGTAGATTAAATGCTTGGATCTGAGGT---------------------------GTAACTGTC---------GATAT--------------TTTCCCTTCTGAAATGATGGAA i eriEur1.scaffold_224038 I 134 C 0 s xenTro2.scaffold_155 306604 72 - 2240893 GCTGCCTTCTGAATAGTAAGTGCCTGAATTTGGGGG---------------------------GCAACGCTG---------GAGAT--------------TTTGCCCTCAGAGATAATCGAG i xenTro2.scaffold_155 I 163 C 0 s danRer6.chr3 18566530 68 + 60907308 GCAGCCTTTTGTAGATTAAAAGCCTGGA-----------------------------------ACTGCGGTG-----AACTGATGT----------TGCCTTTGCCCTCTGATA----AGGA i danRer6.chr3 I 2500 I 1 s gasAcu1.chrXI 16061283 94 + 16706052 ----------------------------TCTGAGGTCTGAACTTAGATAGAATCACACCGAGCGCCGCAGTGTCTCATACTAGTATTAGTAGTACCTGCAGCAGCCCTTTGGTACTGGGGGA i gasAcu1.chrXI I 44 I 26 s petMar1.Contig1766 28088 57 + 38963 GCAGCCTTTTGCAGCGTGACGGCCTG--TGCAGGGT---------------------------TCAGCCTCT-------CCGCGAT--------------TTGGCCA--------------- i petMar1.Contig1766 I 179 C 0 e fr2.chrUn 68212128 483 - 400509343 I e oryLat2.chr4 10742866 273 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=124983.000000 s hg19.chrUn_gl000229 13068 91 + 19913 GAGTCCAATTTTGTTGTTTCCAGGCTGTCATTTATATTA----GGTTGAGTTATTACTCCTTTATTAGTTTTACTTTTTGTTTTTCTGTTTGGGA s panTro2.chrY 10059012 91 - 23952694 GAGTCCAATTTTGTAATTTCCAGGCTGTCATTTATATGA----GGCTGAGTTATTCCTCCTTTATTTGTTTTACTTTTTGTTTTTCTGTTTGGGA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3039805 91 + 135000294 GAGTCCAATTTTGTAATTTCCAGGCTATCATTTATGTTA----CGTTGAGTTATTCCTCTTTCATTAGTTTTACTTTTTGTTTTTCTGTTTGGGA i ponAbe2.chr2b C 0 C 0 s eriEur1.scaffold_224038 11498 91 + 14063 GAGTCCAATTTTGTTATTTCCAAGCTATCATTTATATTA----GGTTGAGTTATTCCTCCTTTAttagttttactttttgtttttctgtttggga i eriEur1.scaffold_224038 C 0 N 0 s xenTro2.scaffold_155 306676 91 - 2240893 GAATCCAATTTACTAATCTCCAAGCTGTCGTTCATGTTG----GCCTGTGTCACACCACCTTTACTTGTTTTACTTTTGGTCTTTCGATTTGGCA i xenTro2.scaffold_155 C 0 C 0 s fr2.chrUn 68212611 88 - 400509343 GGATCCAGTCGAAGGATGTCCAGACTTTCATTCAGGTTGTTGCTATTTGATG-------TTTTTGCCGATTTACATTTAGTTTTTCTATTTGGGA i fr2.chrUn I 483 C 0 s gasAcu1.chrXI 16061403 88 + 16706052 GCGTCTAGTCTCAAGATGTCCAGACTCTCGTTCAGGTTGCTGCTATTGGACG-------TCTTTGCAGATTTACATTTAGTTTTCCTGTTGGGTA i gasAcu1.chrXI I 26 C 0 s oryLat2.chr4 10743139 88 - 34636364 GGGTCCAGCCGCAGGATGTCCAGACTTTCGTTCAGATTGCTGCTGTTAGAGG-------TCTTTGCAGATTTACACTTGGTCTTCCTATTGGGGA i oryLat2.chr4 I 273 C 0 s danRer6.chr3 18566599 91 + 60907308 GAATCTAACTTGAGGATCTCGATGCTCTCATTCAGATTA----GATGGGGTGATTCCTCCCTTACCCGTTTTCGTTTTGGTCTTTCGGTTAGGAA i danRer6.chr3 I 1 C 0 s petMar1.Contig1766 28145 91 + 38963 GGCTCAGGCTTAGTGCCGTCCAGGTTCTCGCCGAGGTTG----GGCTGCACCAGGCCCCCCTTGCTGCTCCTGCTCTTTGGCTTGCGGCTGAGCG i petMar1.Contig1766 C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=86456.000000 s hg19.chrUn_gl000229 13159 39 + 19913 ------TTTTAGGTGGAAACTTCATTTTTAATTTCTTCCTATTCT s ponAbe2.chr2b 3039896 39 + 135000294 ------TTTTAGGTGGAAAATTCATTTTTAATTTCTTCCTATTCT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059103 39 - 23952694 ------TTTTAGGTGGAAACTTCATTTTTAATTTCTTCCTATTCT i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 306767 39 - 2240893 ------TTTTAGGTGGAAACTTCATTTTTAACTTTTTGCTGTTTT i xenTro2.scaffold_155 C 0 I 590 s fr2.chrUn 68212699 39 - 400509343 ------TCTTAGTTGGAAACTTCATTTTTAACTTCTTACTGTTCT i fr2.chrUn C 0 I 93 s gasAcu1.chrXI 16061491 39 + 16706052 ------TCTTTGTAGGAAACTTCATCTTTAACTTCTTGCTATTCT i gasAcu1.chrXI C 0 I 32 s oryLat2.chr4 10743227 39 - 34636364 ------TCTTGGTGGGAAACTTCATCTTCAGCTTCTTACTGTTCT i oryLat2.chr4 C 0 I 70 s danRer6.chr3 18566690 39 + 60907308 ------TCTTGGTGGGGAACTTCATTTTCAGCTTCTTACTGTTCT i danRer6.chr3 C 0 I 246 s petMar1.Contig1766 28236 45 + 38963 ACTTGCTCGGCGATGCAAACTTCAGTTTTGGCTTCTTGCTGTTCT i petMar1.Contig1766 C 0 I 1843 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=78088.000000 s hg19.chrUn_gl000229 13198 103 + 19913 CCTTGGTTGTGGAACTGTCACGAGTAAAGAGTCGTGAACTTCTTCAATGCAGTGCATTTGGGGGAGATATCATAGTGTGGCTCAATACCTGAGGTGTTGTACT s ponAbe2.chr2b 3039935 103 + 135000294 CCTTGGTTGTGGAACTGTCACTAGTAAAGAGTCGTGAACTTCTTCAATGCAGTGCATTTGGGGGAGATGTCATAGTGGGGCTCAAAACCTGAGGTGTTGTATT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059142 103 - 23952694 TCTTGGTTGTGGAACTGTCACTAGTAAAGACTTGTGAACTTTTTTGATGCAGTGCATTTGGGGGAGATGTCATAGTGGGGCTCAATACCTGAGGTGTTGTACT i panTro2.chrY C 0 C 0 s fr2.chrUn 68212831 103 - 400509343 CCTTGGCTGTAGAACTTGCACTTGTAAATAATCTAGAGCTTCTTCTGGGTTGGACATTTGGAGGACCAGACATACTGGGACTAAGGACCTGAGGGGAACTACT i fr2.chrUn I 93 I 178 s oryLat2.chr4 10743336 103 - 34636364 CCTTGGCAGTTGAACTGGCACTGGTGAAGAGTCTCGAGCTTCTTCTGGGCTGAACATTAGGAGGGCCAGACATGCTAGGACTAAGGACCTGAGGGGACCCACT i oryLat2.chr4 I 70 I 53 s danRer6.chr3 18566975 103 + 60907308 CCTTGGCAGTGGAGCTGGCACTGGTGAAGAGTCTTGAGCTCCGCCGTGGCTGCACATTTGGGGGAGCAGCAATGGTTTGGCTCAGCACTTGCGGTGTAGTACT i danRer6.chr3 I 246 I 67 s xenTro2.scaffold_155 307396 99 - 2240893 --TTGGTGGTAGAGCTATCGCTGGTAAAAAGCCGAGAACTACGACGTGGTAATGCATTAGGTGGAGCGGCTATTGTTGGGCTCAGTACCTGAGGTGTGGTG-- i xenTro2.scaffold_155 I 590 I 443 s gasAcu1.chrXI 16061562 49 + 16706052 -------------------------GAGTAGTATTTAAATC-----------AGTATTAGTTTCACCCAACAGTGCAGGAGT------------------ACT i gasAcu1.chrXI I 32 I 31 e petMar1.Contig1766 28281 1843 + 38963 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=-351.000000 s hg19.chrUn_gl000229 13301 43 + 19913 TA----------TTTATGGACCAGAACTTTCTGTTTGTG------CA---AGAA--TTGGAGTT s ponAbe2.chr2b 3040038 43 + 135000294 TA----------TTTATGGACGAGAACTTTCTGTTTGTG------CA---AGAA--TTGGAGTT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059245 43 - 23952694 TG----------TTTATGGACCAGGACTTCCCGTTTGTG------AA---AGAA--TTGGAGTT i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 307938 46 - 2240893 TG----------TTTGAGGACCAGAGCCCTGAGTCTGTA------CAAGGAGAA--CTGGGGTG i xenTro2.scaffold_155 I 443 C 0 s oryLat2.chr4 10743492 44 - 34636364 CA----------TCTGTG-------AGTCTTACCTGGTGTGAGGTGC---AGAGGTCTGTGACT i oryLat2.chr4 I 53 I 20 s gasAcu1.chrXI 16061642 16 + 16706052 CA-------------------------------------------GT---AGAA--CTGGCACT i gasAcu1.chrXI I 31 I 254 s danRer6.chr3 18567145 56 + 60907308 TGATGTACCTGGTCTGTGGAGCAGTAGTCTGAGTTTGGAT-----AA---AGGGGTTTGGAATG i danRer6.chr3 I 67 C 0 e petMar1.Contig1766 28281 1843 + 38963 I e fr2.chrUn 68212934 178 - 400509343 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=58035.000000 s hg19.chrUn_gl000229 13344 109 + 19913 ACCTCTCGGCTATTTCCACTCTGTGAGAAGACAGACTTTGCTCCAATTTG-GCCTATTCTGGCAACAGACTTTTTTGAAGGGA-------------CTCCGGTGGATGTCATATCCATTACAG s ponAbe2.chr2b 3040081 109 + 135000294 ACCTCTCGGCTATTTCCCCTCTGTGAGAAGACAGACTTTGCTCCAGTTTG-GCCAATTCTGGAAACAGACATTTTTGAAGGGG-------------CTCTGGTGGATGGCACATCAATTTCAG i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059288 109 - 23952694 ACCTCTCGGCTATTTCCACTCCGTGAGAAGACAGATTTTGCTCCAGTTTG-GCCAATTCTGGCAACAGACTTTTTTGAAGGGG-------------CTCCGGTGGATGGCACATCAATTACAA i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 307984 122 - 2240893 ACATCCCGGCTGTTACCGCTCTGAGAAAAGACAGACTTTGTTCCTGCTTG-GCTGATTCTAGCAACAGACTGAAATAAAAAGGAGAGGAAATGTTATACTGGCAGACACCACAGCGACAACAG i xenTro2.scaffold_155 C 0 I 1617 s fr2.chrUn 68213112 64 - 400509343 ACATCTCTGCTGTTACCACTCTGACTGAAGACGGAtttgg------actg-actgatcctggAGACGGCCT---------------------------------------------------- i fr2.chrUn I 178 I 1678 s gasAcu1.chrXI 16061912 64 + 16706052 ACATCTCTGCTGTTTCCACTCTGACTGAAAACAGATTTTG------ACTG-ACTGATCCTGGAGACAGACT---------------------------------------------------- i gasAcu1.chrXI I 254 I 1517 s oryLat2.chr4 10743556 80 - 34636364 ACATCTCTACTGTTTCCACTCTGACTGAAGACAGACTTGG------ACTG-ACTGATCCTGGACACAGAC------TGGAGGA-------------GGAACACAGG----------------- i oryLat2.chr4 I 20 n 20 s danRer6.chr3 18567201 103 + 60907308 ACCTCTCTGCTGTTGCCACTTTGTGCAAACACTGACTTCG-TCCCCACTGTTCTGATTCTACTGACAGCCTGaaattaaaatt-------------taattattga------atttattttCA i danRer6.chr3 C 0 C 0 e petMar1.Contig1766 28281 1843 + 38963 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=8915.000000 s hg19.chrUn_gl000229 13453 34 + 19913 AAGGTGTATTAGTGTAGTTTTGTAAATAGGATCC s panTro2.chrY 10059397 34 - 23952694 AAGGTGTATCAGTGTAGTTTTGGAAATAGGATCC i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3040190 34 + 135000294 AAGGTGTGTTAGTATAGTTTTGTAAATAGGATCC i ponAbe2.chr2b C 0 C 0 s tetNig2.chr3 15549 28 - 15489435 ---CCTTATTGTCTTGGTTTTGCAAACTGCC--- i tetNig2.chr3 N 0 C 0 s danRer6.chr3 18567304 34 + 60907308 AGACATTATTTACATGATCTCATAAATTGAATTC i danRer6.chr3 C 0 I 2772 e xenTro2.scaffold_155 308106 1617 - 2240893 I e gasAcu1.chrXI 16061976 1517 + 16706052 I e petMar1.Contig1766 28281 1843 + 38963 I e fr2.chrUn 68213176 1678 - 400509343 I e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=4257.000000 s hg19.chrUn_gl000229 13487 24 + 19913 ATCTCCAGGACTTGGGGTT--------TCTAA s panTro2.chrY 10059431 24 - 23952694 ATCTCAAGGACTTGGGGTT--------TCTAA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3040224 24 + 135000294 ATCTCCAGGACTTGGGGTT--------TCTAA i ponAbe2.chr2b C 0 C 0 s tetNig2.chr3 15577 17 - 15489435 -------ATTCTAGGAGCA--------TCCAA i tetNig2.chr3 C 0 C 0 s danRer6.chr3 18570110 23 + 60907308 ---------ACCTGTAGCAAATATCGGTCTTA i danRer6.chr3 I 2772 I 1 e xenTro2.scaffold_155 308106 1617 - 2240893 I e gasAcu1.chrXI 16061976 1517 + 16706052 I e petMar1.Contig1766 28281 1843 + 38963 I e fr2.chrUn 68213176 1678 - 400509343 I e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=203792.000000 s hg19.chrUn_gl000229 13511 231 + 19913 TGGTAAAAT------------CCCAA---AACTTGGGGTTAATGGACTAAGAGATGCTGGTCCTCCTAATAAAGTTCGATCAGTTTTTGCTTTATTTTGAACCTGTTTAGATAATATGGAAGTTCCTG------------------TTCCCAGTGGGA---GAGTATCAGGTGAAATTACAGCTGAATCAATAGAAGACACTGGGGAATCTGTATTCAAGGAGTACTTTGAATTGGAAGATTCTAAATTCAATCTGTTTAATTC---AGT s ponAbe2.chr2b 3040248 231 + 135000294 TGGCAAAAT------------CCCAA---AACTTAGGGTTAATGGCCTAAGAGCTGCTGGTCCTCCTAATAAACTTCGAACAGTTTTTGATTTATTTTGAACCTGTTTAGAAAATATGGAAGTTCCTG------------------CTTCCAGTGGGA---CAGTATCAGGTGAAATTACAGCTGAATCAATAGAAGACACTGGGGAATCTGTATTCAAGGAATATTTTGAATTGGAAGATTATAAATTCAATCTGTTTAATAC---AGT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059455 230 - 23952694 TGGCAAAAT------------CCCAA---AACTTGGGGTTAATGGACTAAGAGCTGCTGGTCCTCTTAATAAACTTCGACCAGTTTTTGGTTTATTTTGAACCTGTTT-GATAATATGGAAGTTCCTG------------------TTCCCAGTTGGA---CAGTATCACGTGAAATTACAGCTGAATCAATAGAAGACACTGGGGAATCTGTATTCAAGGAATACTTTGAATTGGGAGATTCTAAATTCAATCTGTTTAATTC---AGT i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 309723 227 - 2240893 TGAAACAAC------------TCCTT---ACCTTGGAGTGAGTGGGCTTAGTGCTGCTGGTCCTCCCAATAGGCTGCGGCCAGTCTTTGGTTTGTTTTGGGCCTGTTTGGATAGAATGGAGGTTCCAG------------------TACCAAGGGGCA---GGGAATCGGGAGAAATAACACCAGGATCTATGTAGGATATTGAGGAATCACTGTTCAAGGGATATTTCATGTTAGATGACTCCAGGTTCAGTCTGTTAAGTT------- i xenTro2.scaffold_155 I 1617 I 1078 s tetNig2.chr3 15594 228 - 15489435 ---------------------AACTC---ACCTGGGAGTCAATGGGCTGAGTGCAGCAGGTCCTCCGAGTAAACTCCGTCCACTTTTTGGCTTATT------CTGTTTAGCTATCAAGGAGGCAGCTGAGGCCAAGGAAACTGTGTTACTCAGTAAGGAGCCAGTCTCAGGTGAGATGAGGGAGGAGTCAATGTAGGAAACGGACAAATCCG------ATGAGAGCTTCCCGTTTGAAGATTCTAAATTCAAACGATTCAACTC------ i tetNig2.chr3 C 0 I 78 s gasAcu1.chrXI 16063493 237 + 16706052 TTGTGAAAT------------AGCTC---ACCTGGGCGTCAGTGGGCTCAGTGCTGCAGGTCCCCCAAGTAAACTCCGCCCACTCTTGGGCTTGTT------CTGTTTAGCCAATAGGGAACCAGCTGACGCCATGGAAACCGAGTTGCCAATTAGTGAGCCGGTCTCCGGTGAGATTAGGGAGGAGTCAATGTAGGAAACCGATAAATCAG------ACATCAGCTTTCCATTAGATGATTCTAGATTCAAACGATTCAACTC------ i gasAcu1.chrXI I 1517 I 198 s fr2.chrUn 68214854 223 - 400509343 -----------------------------ACCTGGGAGTTAACGggctgagagcagcaggtccTCCAAGTAAACTGCGTCCACTTTTTGGCTTATT------CTGTTTGGCTATAAGGGAGGCAGCCGAGGCCATGGAGACCGTGTTGCTCAGTAAGGAGCCAGTCTCAGGTGAGATGAGGGAGGAGTCAATGTAGGAAACTGACAAATCTG------ATGAGAGTTTCCCGTTTGAAGATTCTAAATTCAAACGGTTCAactc------ i fr2.chrUn I 1678 I 79 s danRer6.chr3 18570134 245 + 60907308 -TGTCCAATTAAAATCTCAGGAGCTCATTACCTTGGAGTGAGGGGACTGAGCGTGGCTGTGCCCCCCAGTAGACAGCGGCCACTTTTGGGTTTATTCTGAACCTGTTTGGATAAGAGTGAGCCA------------------CTACTGCTCAGTGGCA---CAGAGTCTGGCGAAATGACGGAGGAGTCGATGTATGACACAGAGGAGTCCGTATTCAGAGAGTACTTGGAGTTAGAAGATTCTAGATTGAGTCGGTTTTGCTCCTT--- i danRer6.chr3 I 1 I 389 e petMar1.Contig1766 28281 1843 + 38963 I e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=130401.000000 s hg19.chrUn_gl000229 13742 150 + 19913 TGCGTTCTGGGGTGTTTCCATAAGAACAGTCTCAGGCTGTCTGTGACAT---AAACTATGACGAGGTAC-TTGTGTGGTGC----AACACTTGGACA--------------GACAGTTGCTAAA--GTTATGTAAAGATGTGAATTTAAAACTTTGGTCAGGATCTGGCTTTTC s ponAbe2.chr2b 3040479 150 + 135000294 TGTATCCTGGGTTGTTTCTGTAAGAACGGTCTCAGGTTGTCTGTGACAT---AAACTATGATTAGGTAC-TTGTGTTGTGC----AAGAGTTGGGCA--------------GACAGTTGCTAAA--GATCTGTAAAGATGTGAATAAGAATGTGTGGTCAGGATCTGGCTTTTC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059685 150 - 23952694 TGTGTCCTGGGGTGTTTCCGTAAGAAAGGTCTCAGACTGTTTGTGACAT---AAACTATGATTAGGTAC-TTGTGTTGTGC----AAGAGTTGGGCA--------------GACAGTTGCTAAA--GTTCTGTAAAGATGTGAATTTAAATGTTTGGTCAGGATCTGGCTTTTC i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 311028 153 - 2240893 AGTGTCTTGAGGAGTCTCCATTAACACTGTATCAGGTTGCCTATGTTGTACAACACTGTGTGTGTTCAC-GGTCATTGTGC----AAGTGTTGGGCA--------------GGCAGTTACTGAA--GTTCTGGAGTGAGGTCAGTTTGAATGTCTGCTCAGGGTCTGGCTTTTC i xenTro2.scaffold_155 I 1078 I 196 s tetNig2.chr3 15900 141 - 15489435 TGTGTCCTGTGGCGTCTCCATGAGGACAGTGT---------------CC---AGACGGTGAGAAGGATT-CTGAGCAGGACTCACAGGTGGAGGGGG--------------TGGACCTATGGAAGTGTTCTGGAGAGATGAAAGTCTGAACACCTGCTCTGGATCTGGCTTCTC i tetNig2.chr3 I 78 I 38 s fr2.chrUn 68215156 141 - 400509343 TGTGTCCTGCGGTGTTTCCATGAGGACTGTGT---------------CC---AGACGGTGGGAGGTGTT-CTGAGCAGGACTGAcaggtggaggggg--------------tggaacCATTGAAGTGTTCTGTATAGATGACAATCTGAACACCTGCTCTGGATCTGGCTTTTC i fr2.chrUn I 79 I 64 s gasAcu1.chrXI 16063928 141 + 16706052 TGTGTCCTGGGGTGTCTCCATGAGGGCGGTGT---------------CT---AGGCGGTGGGAGGGGTT-CTGAGCAGGGCTAACAGATGGAGGGAG--------------AGGTGCTATAGAAGAGTTGTGTAGAGAGGACAACCTAAAGACTTGATCTGGATCTGGTTTCTC i gasAcu1.chrXI I 198 I 89 s danRer6.chr3 18570768 164 + 60907308 ----TCCTGTGGGGTCTCCATTAGGACAGTGTCGACTTGTCTGTGTCCC---ATGTTGTTACTAGGTGT-GTGCGCAGGGCTAATGGGAGAGGGAGGGATGCCTCCTCCACTGCCTCCACTAAA--ATTCTGCAAGGAGGTCAATCTGAAGATTTGCTCCGGGTCTGGCCGCTC i danRer6.chr3 I 389 I 95 s petMar1.Contig1766 30124 141 + 38963 TGTGTCCTGTGGGGTCTCCATGACCGGAGTTT-------CCTGCACACG---AGACCCAGCATTGCCACACGGTGTGGGGT-------AGTTGGATT--------------GACAGGTCCCAAA--GTTCTGCAATGACGACAATCTGAAGATCTGGTCCGGGTCTGGCTTTTC i petMar1.Contig1766 I 1843 C 0 e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=91528.000000 s hg19.chrUn_gl000229 13892 89 + 19913 ---------------------------------------------------------------------------------------------ACCTATTTCAAATAATGATTCAAAGGGATACCAGAGGAAAGGATTTAAACTAAGGCTCTTTTGGTAGCATTCTGATCCTTTGGCAAGCC s ponAbe2.chr2b 3040629 89 + 135000294 ---------------------------------------------------------------------------------------------ACCTATTTCACATAATGATTTAAAGGGATACCAGAAGAAAAGATTTAAACTAAGGCTCTTTTGGTAGCATTCTGATCCTTTGGCAAGTC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059835 88 - 23952694 ---------------------------------------------------------------------------------------------ATCTATTTCACATAATGATTC-AAGGGATACCAGAGGAAAGGATTTAAACTAAGGCACTTTTGGTAGTATTCTGATCCTTTGACAAGCT i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 311377 89 - 2240893 ---------------------------------------------------------------------------------------------ACCTATTTCACACAGAGACTCAAATGGGGACCACAGGAAAGGATTTAAACTAAGGCTCTTTTGGTAACATTCTGCTCCTTTAGCCAATC i xenTro2.scaffold_155 I 196 C 0 s fr2.chrUn 68215361 89 - 400509343 ---------------------------------------------------------------------------------------------ACCTAAGTGACAAAGGTTCTGGAAAGGTGACCAGAGAAAGGGGTTGAGAGTTAAACTCCTTTGGAAACACTCTGAGCCTTTAGCAACGC i fr2.chrUn I 64 I 67 s gasAcu1.chrXI 16064158 88 + 16706052 ----------------------------------------------------------------------------------------------CCTAGGTGACAGAGGTTCTGGAAAGGCGACCAGAGGAAGGGATTTAGAGCTAAACTTCTCTGGAAACACTCTGCACCTTTAGCAACAC i gasAcu1.chrXI I 89 I 308 s danRer6.chr3 18571027 89 + 60907308 ---------------------------------------------------------------------------------------------ACCGATTTGACATAATGACTCGAATGGAGACCATAAGAAGGGGTTCTCGCTCATGCTCTTTTGGTAACATTCTGCTCCTTTTGCTATCC i danRer6.chr3 I 95 C 0 s petMar1.Contig1766 30265 182 + 38963 ACCTGTAATCAAGCACAGTTTCACGGTGAGTGGAAATAATCATAGAATACCAAAATTAAGCATTATAAGAGCGTGCATAACAGTTGAGCACTCACCTATATCACAGAGGGCCTCAAATTGTGACCACAGGAAGGGATTTAAGCCCAGGCTCTTCTGGAAGCACTCTGCACCTTTTGTGGTAC i petMar1.Contig1766 C 0 C 0 e tetNig2.chr3 16041 38 - 15489435 I e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=3168.000000 s hg19.chrUn_gl000229 13981 11 + 19913 GAT--------------CTGTCTTG s ponAbe2.chr2b 3040718 11 + 135000294 GAT--------------CTGTCTTG i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059923 11 - 23952694 GAT--------------CTGTCTTG i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 311466 11 - 2240893 GAT--------------CTGTTTTG i xenTro2.scaffold_155 C 0 I 1185 s tetNig2.chr3 16079 3 - 15489435 GAT---------------------- i tetNig2.chr3 I 38 C 0 s fr2.chrUn 68215517 25 - 400509343 GATGCTCGATCAACTCGCCTCTCAC i fr2.chrUn I 67 C 0 s gasAcu1.chrXI 16064554 11 + 16706052 GAT--------------CCATTTAC i gasAcu1.chrXI I 308 C 0 s danRer6.chr3 18571116 11 + 60907308 GAT--------------CAGTTTTG i danRer6.chr3 C 0 I 2677 s petMar1.Contig1766 30447 11 + 38963 GCT--------------CAGTTTTA i petMar1.Contig1766 C 0 I 133 e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=195552.000000 s hg19.chrUn_gl000229 13992 125 + 19913 CAATATACATGTCCCAACAATGGAAGGGGAAAGCAAGCTGAAT--------CACCAAACTCAGTAACAATATCATCATGGCTTTTCTGCTTATGAAACACTCCACCAGATAAGATTTGTTCCCCTTCTGCAAG s ponAbe2.chr2b 3040729 125 + 135000294 CAATATACATGTCCCAATAATGGAAGGGGAAAGCAAGCTGAAT--------CACCAAACTCAGTAACAATATCATCATGGCTTTTCTGCTTATGAAACACTCTGCCCGATAAGATTTGTTCACCTTCTGCAAG i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10059934 125 - 23952694 CAATATACATGTCCCAACAATGGAAGGGGAAAGCAAGCTGAAT--------CACCAAACTTGGTAACAATATCATCATGGCTTTTCTGCTTATGGAACACTCCACCAGATAAGATTTGTTCCCCTTCTGCAAG i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 312662 125 - 2240893 CAATATACATGGCCAAGCAATGATAATGTAAAGCAGGCAGAGT--------CTCCAAACTCTGTAACAATCTCCTCTTGACTCTTCTGTTTATTAAGCACACCACCCGACAAGATCTGCTCTCCCTCAGCTAG i xenTro2.scaffold_155 I 1185 I 973 s fr2.chrUn 68215542 125 - 400509343 CAGTAGATATGGCCCAGCAATGACAGCGTGAAGGAGGCCGACT--------CTCCAAactctgtgatgatgtcatcctggcTCTTTTGCTTGTTCAGCACTCCACCAATCAAAACCTGCTCTCCTTCAGccag i fr2.chrUn C 0 I 102 s gasAcu1.chrXI 16064565 125 + 16706052 CAGTAAATATGTCCCAGTAACGACAGTGTGAAGGGGGCGGAGT--------CTCCAAATTCTGTGATGATGTCATCTTGACTTTTCTGTTTGTTCAGCACTCCACCAATCAGAACCTGTTCTCCTTCAGCAAG i gasAcu1.chrXI C 0 I 208 s danRer6.chr3 18573804 124 + 60907308 CAGTAAATTTGTCCGAGCAATGCCAGAGTGAAGCAGGCCGAGT--------CTCCAAACTCAGTTATGATGTCATCTTGACTTTTCTGTTTGTTCAAAACTCCTCCGGTCAGGATCTGTTCTCCTTCTGCCA- i danRer6.chr3 I 2677 I 2003 s tetNig2.chr3 16082 118 - 15489435 --GTGGATATG-------------AGGGTAaaggtgggtgtgtgcatgtgactCCAAACTctgtgatgatgtcatcctGACTCTTCTGTTTGTTCAGCACTCCGCCAATCAAAACCTGTTCTCCTTCAGCCAG i tetNig2.chr3 C 0 I 91 s petMar1.Contig1766 30591 122 + 38963 ---TAGATCTGGCCGAGTGTGGCCAGGACGAAGCACGCAGCAT--------CTCCAAATTCGGTCGTTATCTCCTCGTAAGTGCGGGCTTTCCCCAAGATGCCTCCAGCCAGGATGCGCTCTGCTTCTGCGAG i petMar1.Contig1766 I 133 I 759 e oryLat2.chr4 10743636 20 - 34636364 I e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=325964.000000 s hg19.chrUn_gl000229 14117 151 + 19913 CTTGCTGACATCAAAACAACATTTTGCAAGCAGGTACTTGCATTGCGGTGTAGGACAACTGTGTCCTTTCAAGAGTCTATATGCTTTATAGGCCTTTCCTGGGCAGTAAGAACAGGTCGCCAGTAAAAACAAGGCTTCTTCTGAGTGTACT s ponAbe2.chr2b 3040854 151 + 135000294 CTTGCTGAGATCAACACAACATTTTGCAAGCAGGTATTTGCATTGCAGTGTAGTACAACTGTGTCCTTTCAAGAGTCTATATGCTTTAAAGGCCTTTCCTGGGTGCTAAGAACAGGTCGCCAGTAAAACCAAGGCTTATTCTGAGTGTACT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10060059 151 - 23952694 CTTGCTGAGATCAACACAACATTTTGCAAGCAGGTATTTGCATTGCAGTGTAGGAAAACTGTGTACTTTGAAGAGACTATATGTGTTATAGGCCTTTCCTGGGTAGTAAGAACAGGTAGCCAGTAAAAACAAGGCTTCTTCTGAGTGTACT i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 313760 150 - 2240893 CTTGCTGAGGTCAACACAGCACTTTGCAAGAAGATATTTACATTGTGGAGTGGCACAACTGTGGGCTTTCAGGAGACGGTATGCCTTGTAAGCTTTTCCTGAGCGGTAATAGCAGGTGGCCAGCAAAAATAATGCCTCCTCAGAATGCAC- i xenTro2.scaffold_155 I 973 I 355 s eriEur1.scaffold_27137 383 105 - 1262 ------------------ACATTTTGCAAGCAGATGATTACACAGAGGTATAACACAACTCTGACTTCTCAAGAATTTATATGCTTTCTATG-CTTTCCCAAGTTGTAATAAAAGATTAccagt--------------------------- i eriEur1.scaffold_27137 N 0 N 0 s tetNig2.chr3 16291 151 - 15489435 CTTGCTTAACTCCACACAGCATTTGGCTAATAGGAAGCGAACCTGTGGCGAGGAACAGCTGTgggccttcagcagcctgtAAGCTTTATAGGGCTTCCCAGAGCGGTAATAACACGTTGCTAACAGATAGAGCGCCTCTTCTGACCTCACT i tetNig2.chr3 I 91 I 940 s fr2.chrUn 68215769 151 - 400509343 CTTGCTTAATTCCACGCAGCATTTGGCTAACAGGAAGCGAACCTGTGGCGAGGAGCAGCTGTGGGCCTTCAGCAGCCGGTAAGCTTTATAGGGTTTCCCAGAGCGGTAGTAACATGTTGCTAACAGGTAGAGCGCCTCTTCTGACCTCACT i fr2.chrUn I 102 I 2012 s gasAcu1.chrXI 16064898 151 + 16706052 CTTGCTGAGTTCCACGCAGCACTTTGCCAAAAGGAATCGAACCTGCGGTGTGCAGCAGCTGTGAGCCTTCAGCAGCCGGTACGCTTTATATGGCTTTCCAGAGCGGTAGTAACATGTAGCAAGCAGGTACAGGGCCTCCTCTGACCTCACT i gasAcu1.chrXI I 208 I 98 s oryLat2.scaffold697 44177 151 + 117618 CTTGCTCAGCTCCACACAGCACTTTGCcagcaggaatcgaacctgtggCGTGGAGCAGCTGTGAGCTTTTAGCAGCCGGTACGCCTTGTAGGGCTTTCCTGAGCGGTGGTAGCAGGTAGCCAGCAGGTAGAGAGCCTCTTCTGACCTCACT i oryLat2.scaffold697 I 32326 I 67 s danRer6.chr3 18575931 151 + 60907308 CTTGCTCAGTTCCACACAGCATTTGGCAAGAAGATATTTGCATTGTGGTGTAGTACAGCTGTGTCTTTTCAGCAGGTGGTAGGCCTTGTATGCTTTCCCTGAACGGTAGTAGCACGTGGCCAGCAGGAAGAGTGCCTCTTCTGAATGGACT i danRer6.chr3 I 2003 I 260 s petMar1.Contig1766 31472 144 + 38963 CTTCTCaagctccacacagcagcgaGCCAGCAGATGCTTGCATTGCGGCGTGGAACAAGAGTGCATCTTCAGCAAGCTGTAAGCCTTGTACGGCTTACCCGAGCGGTAGTAGCAAGTGGCCAGGAGGAACAGCACTTCTTCTGA------- i petMar1.Contig1766 I 759 I 132 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=158566.000000 s hg19.chrUn_gl000229 14268 76 + 19913 TCTGCGTAAAGGCGTTCTGCGAGGAAAACCCCATCTCGGTAAGCATAGTGGTTTAGTGCTTGCCATGTAGCAACCT s ponAbe2.chr2b 3041005 76 + 135000294 TCTGCGTAAAGGCGTTCTGCAATGAAAACCCCATCTCGGTAATCATAGAGGTTTAGTGCTTGCCGTATAGCAGCCT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10060210 76 - 23952694 TCTGCATAAAGGCATTCTGCCGGGAAAACCCCATCTCGGTAAGCATAGTGGTTTAGTGCTTGCCATGTAGCAGGCT i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 314265 72 - 2240893 TCTGCATAGAGCCTCTCTGCCAAGAATACTGCATCTCTGTATGCGTAGTGATTCAGTGCTTGCCATATAGCA---- i xenTro2.scaffold_155 I 355 I 4089 s gasAcu1.chrXI 16065147 76 + 16706052 TCAGCGTAGAGCCTCTCAGCGAGAAACACAGCATCCAGGTAGGCGTAGTGGTTGAGAGCCTGCCACACTGCAGCCT i gasAcu1.chrXI I 98 I 2708 s oryLat2.scaffold697 44395 76 + 117618 TCAGCATAGAGTCTCTCGGCAAGAAAAACTGCATCCAGGTAGGCATAGTGGTTCAGTGCCTGCCACACCGCggcct i oryLat2.scaffold697 I 67 I 11 s danRer6.chr3 18576342 72 + 60907308 TCAGCATAGAGCCTCTCTGCCAGGAATACAGCATCTCGGTAGGCGTAGTGGTTCAGAGCATGCCAGACAGCA---- i danRer6.chr3 I 260 I 1039 s fr2.chrUn 68217932 57 - 400509343 ---------------TCTGCCAGGAAAACTGCATCCAGGTAGGCATAGTGGTTCAGAGCTTGCCACACTGCA---- i fr2.chrUn I 2012 I 2021 s tetNig2.chr3 17382 61 - 15489435 ---------------TCTGCCAGGAAAACAGCATCCAGGTAAGCATAGTGATTCAGAGCTTGCCACACTGCAGCCT i tetNig2.chr3 I 940 I 3140 s petMar1.Contig1766 31748 76 + 38963 TCGGCGAAGAGACGCTCGGCCAAAAAGACGGCATCTCGGAAGGCGTAGTGATTCAAGGCGTGCCAAATTGCAGCCT i petMar1.Contig1766 I 132 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=56414.000000 s hg19.chrUn_gl000229 14344 27 + 19913 GGACGGGTTCCTGTAGCATCGTCATCC s ponAbe2.chr2b 3041081 27 + 135000294 GGACGGGTTCCTGCAGCACCGTCATCC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10060286 27 - 23952694 GGAGGGGTTCCTGCAGCACCGTCATCC i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 318426 27 - 2240893 GGACGGGTTCCTGCAGTACTGTCATCC i xenTro2.scaffold_155 I 4089 C 0 s gasAcu1.chrXI 16067931 27 + 16706052 GGACGGGTTCCTGCAGCACCGTCATTC i gasAcu1.chrXI I 2708 C 0 s oryLat2.scaffold697 44482 18 + 117618 tagcaggTCTAAGAAGCA--------- i oryLat2.scaffold697 I 11 C 0 s danRer6.chr3 18577453 27 + 60907308 GGACAGGTTCCTGCAACACCGTCATTC i danRer6.chr3 I 1039 C 0 s tetNig2.chr3 20583 25 - 15489435 --ACAGGTTCCTGCAGCACCGTCATTC i tetNig2.chr3 I 3140 C 0 s fr2.chrUn 68220010 25 - 400509343 --ACAGGTTCCTGCAGCACCGTCATTC i fr2.chrUn I 2021 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=-18322.000000 s hg19.chrUn_gl000229 14371 56 + 19913 TCGAGGCTCAGACCCACTTTCTGCAGTGCCT-C----AGGCACCCC-CCCACCCCGCCCACA s ponAbe2.chr2b 3041108 57 + 135000294 TCGAGGCTCAGACCCACTTTCTGCAATGCCT-C----AGGCACCCGCCCGACTCCTCCCAAC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10060313 57 - 23952694 TCGAGGCTCAGACCCAATTTCTGCAGTGCCT-C----AGGTACCCCTTCCACCCCTCCCACC i panTro2.chrY C 0 C 0 s xenTro2.scaffold_155 318453 51 - 2240893 TCCGGCCTTA----------CTGCGGCCTCC-CGTCTAGGTCTCTCTCCCGCTGTCGGGACC i xenTro2.scaffold_155 C 0 C 0 s tetNig2.chr3 20608 55 - 15489435 --CGCTACCTGACTTTGTTTATTGGCTTTCG-T----cgtctgtttctcctcttcgcGCTCG i tetNig2.chr3 C 0 I 2 s gasAcu1.chrXI 16067958 55 + 16706052 --CGCTTCAGGACTCTGTCTCTCTGATATTG-T----CGTCCGTTTTCCCTCTTTTCTCTCG i gasAcu1.chrXI C 0 I 2 s oryLat2.scaffold697 44500 48 + 117618 ----------GAACACACTTGTCTGTAGTTACC----CAACCACACACCACCCGATCCAACA i oryLat2.scaffold697 C 0 N 0 s danRer6.chr3 18577480 54 + 60907308 --CGTAGCCAGGCTCCTCTTCTCCCCCTTTT-T----TGGTTTCTTTGCTCCTTCTTCAGT- i danRer6.chr3 C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=-9535.000000 s hg19.chrUn_gl000229 14427 46 + 19913 CCCCTCCCCGCCGTAGTGGCTC---------CGGCCCG------GCCAGCC----TCGGCTCATT s ponAbe2.chr2b 3041165 46 + 135000294 CCCCTCCCTCCCGTAGCGGCTC---------CAGCCCG------GCCAGCC----TCGGCTCATT i ponAbe2.chr2b C 0 I 1216 s panTro2.chrY 10060370 46 - 23952694 ACCCTCCCCCCAATAGCGGCTC---------CGGCCCG------GCCAGCC----TGGGCTCATT i panTro2.chrY C 0 I 1223 s xenTro2.scaffold_155 318504 49 - 2240893 GCTCTCCCC-----AGCTACTCTCAAGACGTCAGACAG------G-CGGCT----CCGGCTCATT i xenTro2.scaffold_155 C 0 C 0 s tetNig2.chr3 20665 27 - 15489435 --TCTTTCT-------TGTCTT---------CGCCTTC------GCCAACC-------------- i tetNig2.chr3 I 2 N 0 s gasAcu1.chrXI 16068015 44 + 16706052 --TCTTTCT-------TTACTT---------CGGTCTC---CAGGAGGAGCTGCAGCCGAAGATT i gasAcu1.chrXI I 2 C 0 s danRer6.chr3 18577534 32 + 60907308 -CGCTTTCT-------TAGCTC---------AGTATCCACTCAGGCCAG---------------- i danRer6.chr3 C 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=15739.000000 s hg19.chrUn_gl000229 14473 37 + 19913 TAAACTCAC-----CAGTTACCAGGG-----GATGGGGGAGGCCGAG s panTro2.chrY 10061639 37 - 23952694 taaaCTCAC-----CAGTTACCAGGG-----GATGGGGGAGGCCAAG i panTro2.chrY I 1223 C 0 s ponAbe2.chr2b 3042427 37 + 135000294 TAAACTCAC-----CAGTTACCAGGG-----GATGGGGGAGACCGAG i ponAbe2.chr2b I 1216 C 0 s xenTro2.scaffold_155 318553 47 - 2240893 TAAACTCACAGCGACCGTTACCGGGGAGGCCGCCGGAGATTGCCGAA i xenTro2.scaffold_155 C 0 C 0 s gasAcu1.chrXI 16068059 37 + 16706052 TGAACTCAC-----CAACCGTTAAAA-----GCCGAACTAAGCCGAG i gasAcu1.chrXI C 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=36491.000000 s hg19.chrUn_gl000229 14510 154 + 19913 CCAGAATGACTTCTTTACCCTGCCACCTCT------GG-AAGCCCGGCCCCTTGTGATCCATTGCAAA---GCGAGAGTCACCTCATGttt------ggaaaacggatcc---gctcccaa---gttcagtggagggatgtggcat------gtaggatgaaggactctcttc-ttctgattg s panTro2.chrY 10061676 156 - 23952694 CCAGAATGACTTCTTTACCCTGCCGACTCT------GGGAAGCCCGGCCCCTTGTGATCCATTGCAAA---GCGAGAGTCACCTCATATTT------GGAAAATGGATGC---ACTCCCAA---GTTCAGTGGAGGGATGTGGCAT------GTAGGATGAAGGACTCTCTTCCTTCTGATTC i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3042464 156 + 135000294 CCAGAATGACTTGTTTACCCTGCTGACTCT------GGAAAGCCTGGCCCCTTGTGATCCATTGCAAA---GCGAGAGTCACCTCATGttt------ggaaaatggatct---gctcccaa---gttcagtggtgggatgtggcat------gtaggatgaaggactctcttccttctgattt i ponAbe2.chr2b C 0 C 0 s xenTro2.scaffold_155 318600 175 - 2240893 TAGAAGCG-------TAAACCGCCGAACGTTTGCGGAGAATGCCGAGCCCCTACGAATCCACAGTAGAATCGAAGGAACCAGCCGAACCTTTCCGAAGAAAGACGAATTCAAAACTCTCAATTCATTGAGTCGGAGCAGGCGCCATCTGGCGGTAAGA-AAGGAGAGCTCATCCTGCTGATTG i xenTro2.scaffold_155 C 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=40481.000000 s hg19.chrUn_gl000229 14664 195 + 19913 ggtctgcacagtggggcctagggctggagctcTCTCTGTGTGGACCGCTGACTCCCTCTACCTTGGGTTCCTTCGGCCACACCCTGGGACACGGGCCTTGGCAGATTCTGACCCTTCCTCGCACTAAAGTCGCTGTCAGAAAGCCCATCTCGTGCTCGGATGCCCCGAATGGCTGTGGCCCGAATGACAATGTTT s panTro2.chrY 10061832 183 - 23952694 GGTCTGCATAGTGGGGCCTAGGGCTGGAGCTCTCTCTGTGCGGACTGCCGACTCCCTCTACCTTGGGTTCCATCGACCCCAGCCTGGGACATGGGCCTTGGCAGATTCTGGCCCTTCCTGGCCCTTACATCGCTGTCAGAAACCCCATCTCGTGCTTGGATGCCCC-AGTGACTGTGGCTCG-----------TG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3042620 180 + 135000294 ggtctgcacagtggggcctaaggctggagctcTCTCTGTGCGGACTGCTGACTGACTCTACCTTGGGTTCCATCGGCCCCACCCTGGGACATGGGCCTTGGAAGATTCTGGCCCTTCCTGGCCCTTATGTCGCTGTCAGAAACCCCATCTCGTGCTCAGATGCCCC-AATGACTGTGGCCC-------------- i ponAbe2.chr2b C 0 I 3 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=83637.000000 s hg19.chrUn_gl000229 14859 357 + 19913 CCTCTCTGGAAACGTTGGAAATCTCTCCTCTACGCGTGGCCAACTGAAACCACAGGAGCTCGGGACACA-AGCCGCCATCCACCTCACTGCTTTCGGTAGAGAATGCTGAG--TCTCTTACTGACTCTCTCTTGACTTGAGTTCTTCATGGGTGTGTGGTTAAGACGTAGTGAGACCAGATGTATTAACTCAGgccaggtgctggtggctcacacctgtaaccccaacactttgggaggctgaggccctaggatcccttgaggaatcgcctaaccctgtggaggtggaggctgcagtgagtgagccataatggtgtcactgcactccagtctgagtgaaagacagagtgaggccctgtcA s ponAbe2.chr2b 3042803 355 + 135000294 CCTCTCTGGAAACATTGGAGATCTCTCCTCCATGCATGGTCACCTAAAATCCCAGGAGCT-AGGACACATGGCCGCCATCCACTTCACTGCTTTCGGGAGATAATGCTGAGAGTCTCTTACCGA----CTCTTGACTTGAGTTCTTCATGGGTGTGTGGTTAAGACGTAGTGAGACCAGATGTATTAACTCAGgccgggttctggtggctcacgcctgtaaccccaacactttgggaggccgaggctgtaggatcccttgaggaatcgcctaactctggggaggttgaggctgcagtgagtgagccataatggtgtcactgcactccagtttgggcaaaagacagagtgaggccctgtcA i ponAbe2.chr2b I 3 C 0 s panTro2.chrY 10062015 359 - 23952694 CCTTTCTGGAAACACTGGAAATCTCTCCTCTATGCATGGTCACCTAAAACCCCAGGAGCTCAGGACAAG-GGCCGCCATCCACCTCACTGCTTTCAGAAGAGAATGCTGAGAGTCTCTTACAGACTGTCTCTTGACTTGAGTTCTTCATGAGTGTGTGGTTAAGATGTAATGAGACCAGATGTATTAACTCAGgcagggtgctggtggctcacgtctgtactcccaacattttgggaggctgaggctgtaggatcccttgaggaattgcctaaccctgaggacgttgaggctgcagtgagtgagccataatggtgtcactgcactccagtctcggcaaaagacagagtgaggccctgtca i panTro2.chrY C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=6063.000000 s hg19.chrUn_gl000229 15216 22 + 19913 caggcaggcaggcaggctggca s panTro2.chrY 10062374 17 - 23952694 caGGCCGGCCGGCAGGC----- i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3043158 17 + 135000294 TGggcaggcaggcaggc----- i ponAbe2.chr2b C 0 C 0 s papHam1.scaffold36738 7095 22 - 12944 caggcaggcaggcaggcaggca i papHam1.scaffold36738 N 0 N 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=94388.000000 s hg19.chrUn_gl000229 15238 452 + 19913 ggcaggcaggcaggcagacagacaACAGCTGTATTATGATCTTCTCAGGGTAGGAAGCAAAAATAACAGAATACTGCGCTTA----AttttttttttgggggggggacggagtttcactcttgttgcccaagctggagtgcaatggcaccatctcagctcactgcaacctccacctcccgtgttgaagtgattctcctgcctcagcctcctgagtagctgagattacaggcatgggccaccacacctggctgattttgtattgttagtagagacggcatttctccatgtgggtcaggcgggtctcgaactggccacctcaggtgatctgcccacctcttcctcccaaagtgctgggatgacaggcgtgagccattgcgcccggccAGCTACGTTTTTTTTTT----AATTTTCAATTTTGAtctctttattattattattatttttttgagacgtagtct s panTro2.chrY 10062391 438 - 23952694 -----------AGGCGGAAAGACAACAGCTGTATTATG---TTCTCAGGGTAGGAAGTAAAAATTACAGAATACAACACTTAttttattttatttttgg-------acagagtttcactcttgttgcccacgctggggtgtaacagcaccgtcatggctcaccgcaacctcctcctgccgtgttcaaccaattctcctgcttcagcctcctgagtagctgggattacaggcatgtgctaccacacccggctgattttgtattgttagtagagacggcatttctctatgtgggtcatgcgggtctcaaactggcaacctcaggtgatctgcccaccttggcctcccaaagggctgggatgacaggagtgaacaattgcacccgcccGGCTACGttttttttttttttaattttcaattttaatCTATTCAtttttcttattatttttt-gagatggagtct i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3043175 439 + 135000294 -------aggcaggcagacagacaACAGCTGTATTATGTTCTTCTCAGGGTAGGAAGTAAAAATAACAGAATACAGTGCTTA----Attttttttttgg------tccagagtttaaatcttgttgcccacgctggagtgcaatggcactatctcggctcaccgcaacctccacctcccatgttcaagtgtttctcctgcctcaacctcctgagtagctgggattacaggcatttgccaccacacccggctgattttgtattgttagtagagacggcatttctctatgtgggtcacgtgggtctcaaactggccacctcaagtgatctgcccaccttggcctcccaaagcgctgggatgacaggcgtgagcaattgcgcctggccAGCTATGTTTTTTTTTT---TAATTTTCAATTTTAATCTAttttttattattattatttttt-gagacggagtct i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0020423 702 220 - 10004 I a score=18133.000000 s hg19.chrUn_gl000229 15690 37 + 19913 tgctctgttgcccagactggagtgcagtggcgtgatg s panTro2.chrY 10062829 37 - 23952694 cgctctcttgcccagactggagtgcagtggcgtgatg i panTro2.chrY C 0 C 0 s gorGor1.Supercontig_0048110 11696 37 + 15832 cgctctgttgcccagactggagtgcactggtgtgatg i gorGor1.Supercontig_0048110 n 220 n 220 s ponAbe2.chr2b 3043614 37 + 135000294 cactctgttgcccagactggagtgcagtgttgtgatg i ponAbe2.chr2b C 0 C 0 a score=87938.000000 s hg19.chrUn_gl000229 15727 377 + 19913 tcggctcactgcaagctctgcctcccgagttcacgccattctcctgtctcagcctcccaagcagctggcactacaggcgcccgccactgcgcctggctaattttttgtattttgagtagagacgggggtttcactgtggtagccaggatggtctcgatctcctgacccccgcgatccgcccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggccTATTTATCTATTTATTAACTTTGAGTCCAGGTTATGAAAccagttagtttttgtatttttttagagacga-------ggtttcaccatgttgccaaggctt-ggatctagggatccaccttccctcgcctcccaaagtgcggggatgaaag s panTro2.chrY 10062866 380 - 23952694 tcggctcactgcaagctctgcctcctgggttcatgccattctcctgtctcagcctcccaagtagctgggactacaggcgcccgccaccacacctggctaattttttgtattttgagtagagacggggttct---tgtggtagccaggatggtctctatctcttggcctccgtgatccgcctgcctcggcctcccaaagtgctggcattacaggcgtgagccaccgcgaccggccTATTTATCTATTTATTAACTT-GTGTCCAGGTTAGGAAAccaggtagtttttgtatttttttagagacaaaatacaaggtttcaccatgttgccagggcttcggatcgagggatccgccttcccttgc-tcccaaagggcggggatgacag i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3043651 374 + 135000294 tcggctcactgcaagctctgcctcccaggttcaggccattcttctgtctgagcctcccaagtagctgggactacaggcgcccgccaccgaacctggctaattttttgtattttgagtagagacggggttct---tgtggtagccaggatggtctcaatctcctgacccccaggacccgcctgcctcgacctcccaaagtgctgggattacaggcgtgagccaccgcaccaggccTATTTATCTATTTATTAACTTTGAGTCCAGGTTATGAAAccagtcagtatttgtatttttttagagacga-------ggtttcaccatgttgccaagactt-ggatcgagggatccaccttccctcgcctcccaaagtgcaggaatgacag i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=10236.000000 s hg19.chrUn_gl000229 16104 36 + 19913 gcgtgagcctactgcgcctggcTCCACCCG--TTCCCC s ponAbe2.chr2b 3044025 35 + 135000294 gcgtgagcctaccgcgcccagctCC-CCCC--TTCCCC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10063246 35 - 23952694 gcgtgagcctaccgcgcccggctCC-CCCT--TCCCCC i panTro2.chrY C 0 C 0 s turTru1.scaffold_110801 7682 36 + 44955 GCGTGAGCGTGACTTGCTCGGTCCT-CTGTGGTGCCC- i turTru1.scaffold_110801 N 0 I 8 s felCat3.scaffold_100116 2890 33 + 44098 ---TGAGCGCGTGGCGCCTGGCCCT-CCGTGGTGCCC- i felCat3.scaffold_100116 N 0 I 8 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=103686.000000 s hg19.chrUn_gl000229 16140 354 + 19913 CCCCAGCTTATCACTCAGGTGCCCAAAGTCCAG-CGGTGGTGTGTGGTTCCCACCCCCAGCGC-CCCCTCCTCCGGTCGCCGCCG-CGGTGTCCGCGAGTGG-GTCCTGAGGGAGCTCGTTGG-TGTGGGGGTCGAGGAGGTTGAGTGAG-----AAGCAC--CC--C-TGCCACGCGGGGAAGGGCGTCGCCTGGTCTGGCGAGCGCAGGTCCTGTGATC-------CCCTCTGGTTGGTGCGCACAGGCAGTGTGA-----------------------------------GCTATCGCGGTGGGCTTGGGCAGGTGACGCG-TGCGCCG------------------------------------------------------------GCCGGCCGCCGAG-----GGGCTACCG----TTCTGCCT----CCGACAGGTTGTGTGTGGATTTACTTGGAGGTGCTTTGTCTAGGAGAAAG s papHam1.Contig39452 81 341 + 2159 -------------CTCAGGTGCCCGAGGCCGAG-CGGTGGCGTGTTGCTCCCGCCCCCAGCGC-CCCCTCCTCCGGTTGCCGCCA-CGGTGTCCGCGTGTGG-GTCCTGAGGGAGCTCGTTGGCTGTGCGGGTCGAGGCGGTTGAGTGAG-----ATGCGC--CC--C-TCCCACGCGGGGAAGGGCGCCGCCTGGTCTGGCGAGCGCACGTCCCGTGCTC-------CCCTCTGGCGGGTGAGCGCGGGCCGTGTGA-----------------------------------GCGGTTGCGGTGGGCTTGGGCCGGCCACGCG-TGCGCCG------------------------------------------------------------GCCGGCCGCCGAG-----GGGCTACCG----TTCTGCCT----CCGATCGGTCGTGTGTGGGTTAAC-TGGAGGTGCTTTGCCTCACAGAAAG i papHam1.Contig39452 N 0 C 0 s myoLuc1.scaffold_60868 957 290 - 1759 CTCCGGGATGTCCTGCAGGTGCCCGAGGCCGAGCTGGTGGTGT-CGTTTCCCGCTccccgcgagccccccgccgggccgccgcTGTCGGCG-------GTGG--GCTGGAGGGGGAGCCCC---GGGGGAGCCTGTCCGGATAAGGGGAA----GGCACGC--CCGTC-CCCCTCGCGGGAGGGGG-------------ACCGGGC----------------------CCTCGCAACGTGTG------TGCCGCGCGG-----------------------------------GCGACCGCGACG-----GGGCCGAGTCAGCG--GTGCCG------------------------------------------------------------GCCGCTGGCTGACCG---TGAGAGTTGGT--TTCTTTTTGCTGCCGCCTGTTCTTCCGTTACTGTA--------------------------- i myoLuc1.scaffold_60868 N 0 I 226 s felCat3.scaffold_100116 2931 345 + 44098 CTCCAGGTCGTCT--CAGGTGCCTGAAGCCGAG-TGGTGGTGC-CGTTCCCTGTTCCCAGCGGACCCCCCTTCGGGTCGCCGCCGTTGGCG-------GAGA-TGCCCGAGGTGG---------GCGGGTGGCAGAATCGGTGAAGGGAA-----GCACAC--CCGTT-CCCCCCGCTG--TGGGG-------------AGCGGGCG-------CCTTGTCGTTCCCGCCCCGCAACGGCCGC-----TGTTGCCCGGAGGGTGTGGGGGACTGACTTGGTGGGGCGAGTTGAGCGATCGTGGC------GGGCCGAGCCGGCGCCGTGGCGC--------------------------------------------------TTGGCCAAAACCCCCCTCTGAGCGA--GGACTGTCGGT--TTCTTGCC----CAGCGTGTTG--------------CTGCCGGTGTTTTGCCTCGG------ i felCat3.scaffold_100116 I 8 I 70 s turTru1.scaffold_110801 7726 380 + 44955 CTCCAGGTCGTCCCTCAGGCGCGCGAGGCCGAG-CGGTGGTGT-CGTTCCCTTTTCCCAGCGTGCTCCTCG--GGGTCTCCGCCG-CGGTG-------GTGTGTCCCGTGAGTGGCTCTCT---CGGGGGGGTCGAGACGGTAAAGGGCGCGGGGGCTTGCCTCTGTT-TCTCTCCCTCGGTGGGG-------------GACGGGGGCCTGCCACCTCGTCGCCATCGTCCTCCCACGG-TG------TGCCGTGGGG---------GGGACTGACT--------------------TCGTGGCC-----GGGCCGACGCCGCG-TGTGCCGCCGCCCCCCACTTGCGTGTGTGTGGGGAGTCGCACACGGGCGTGGGTGCGATCGCGTTGGGCCGGGGCCTGCGAGAAGGGGGCGTCTGTCGCGCTTCTC----GGGCGTGCTCCCCCCTT------------------------------CCG i turTru1.scaffold_110801 I 8 C 0 s panTro2.chrY 10063281 355 - 23952694 CTCCAGCTTATCCCTCAGGTGCCTGAGGCCCAG-CGGTGGTGTGTGGTTCCCACCCCCAGCGC-CCCGTCCTCCAGTCACCGCCG-CGGTGTCTGCAAGTGG-GTCCTAAGGGAGCTCGTTGG-TGTGGGGGTTGAGGCGGTAGAGGGAG-----ACGTGC--CC--CCTCCCATGCAGGGAAGGGCTCCGCCTGGTCTGGCGAACTCAGGTCCAGTGCTC-------CCCTCTGGTGGGTGCGCGCCGGCTGTGTGA-----------------------------------GCGATCGCGGTGGGCTTGGGCAGGCGACGCG-TGCGCCG------------------------------------------------------------GCCGGCCGCCGAG-----GGGCCACCG----TTCTGCCT----CCGACAGGTTGTGTGTGGGTTTACTTGGAGGTGCTTTGCCTGGGAGAAAG i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3044060 352 + 135000294 C-CCAGCTTATCCCTCATGTGCCCGAGTCCGAG-CGGTGGTGTGTGGTTCTCACCCCCAGCAC-CCC-TCCTCCGGTCTCCGCTG-AGGTGTCTCCAAGTGG-GTCCAGAGGGAGCTCGTTGG-TGTGGGGGTCGAGGCGGTTGAGTGAG-----ATGCAC--CC--C-TCCCATGCGGGGAAGGGTGCCACCTGGTCTGGCGAGCGCAGGTCCCGTGCTC-------CCCTATGGCGGGTGCACGCAGGCCGTGTGA-----------------------------------GCAATCGCGGTGGGCTCAGGAAGGTGATGTG-TGCACCA------------------------------------------------------------GCCGCCCACTGAG-----GGGCTACCA----TTCTGCCT----CCGACAGATTGTGTGTGGGTTTACTTGGAGGTTCTTTGCCTGGGAGAAAG i ponAbe2.chr2b C 0 C 0 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=3015.000000 s hg19.chrUn_gl000229 16494 45 + 19913 GAGGCTGGTGGAC--------G--GGGG----GCCCTTGGGGGATTG--CGCACACGCATA s panTro2.chrY 10063636 53 - 23952694 GAGGCGGGTGGACTGGGGGCTG--GGGG----GCCCTTGCGGGATTG--CGCGCACGCGCA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3044412 46 + 135000294 GAGGCGGGTGGAT--------G-TTGGG----GCCCTTGGGGGACTG--CGTGCACGTGCA i ponAbe2.chr2b C 0 C 0 s papHam1.Contig39452 422 31 + 2159 GAGGTGGGTGGAC--------GGCGGGG----GGCCTTGGGGG------------------ i papHam1.Contig39452 C 0 I 24 s turTru1.scaffold_110801 8106 30 + 44955 GAGCCCGGTGGAC--------G----------AGCCTGGGGGGGCGG-------------C i turTru1.scaffold_110801 C 0 C 0 s proCap1.scaffold_4297 23010 49 + 61943 GGGGTTGGGGGAA--------A--CGTGTCACGCCCGTGTGAGGCTCGTCGAGCCCAAG-- i proCap1.scaffold_4297 N 0 N 0 e myoLuc1.scaffold_60868 1247 226 - 1759 I e felCat3.scaffold_100116 3276 70 + 44098 I e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=15546.000000 s hg19.chrUn_gl000229 16539 64 + 19913 GCGGCCAGG-C--CCCCCG-------CCCAGACCGCGAAGGTTCAAGGTTGCCGCACGCAGATTTTTCCTGGTA s papHam1.Contig39452 477 53 + 2159 -------------CCCCTG-------CCCTGACCGCAAACGCTCGAGGTTGCCGCAGGT-GTCTTCTCCTCGCG i papHam1.Contig39452 I 24 C 0 s felCat3.scaffold_100116 3346 67 + 44098 GAAGGCAGG-CAGCCCTTGTTGTGGGCCCTGACCGCGAATGCTCTGGAATGCCCTGTGT------CACTCCGTT i felCat3.scaffold_100116 I 70 I 1 s turTru1.scaffold_110801 8136 61 + 44955 AGAGGTTGT---GCCCCCG----AGGCTGTGGCCGCGAACGCTCCAGTGGGCCGTGTGC------TTACCCATA i turTru1.scaffold_110801 C 0 C 0 s ponAbe2.chr2b 3044458 63 + 135000294 GTGGCCAGG----CCCCCG-------CCCAGTCCGTGAAGGCTCAAGGCTGCCACATGCAGATTTTTCCTGTTA i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10063689 65 - 23952694 GTGGCCAGGAC--CCCCCG-------CCCAGACCTCGAAGGCTGAAGGTTCCCACACGCAGAATTTTCCTGGTA i panTro2.chrY C 0 C 0 e myoLuc1.scaffold_60868 1247 226 - 1759 I e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=23330.000000 s hg19.chrUn_gl000229 16603 83 + 19913 CCGCAGGCCCCCTGCTT--------TCCCCAG--GCATCCC-------------T--GAGCAC-----CTCTAA----GGG------------------------CCCAACGAGGGGCGACTGGCTGGTGGGGAGTGTGAC s papHam1.Contig39452 530 83 + 2159 CCGCAGGCCCCCTCCCT--------TCCCCAG--GCGTCCC-------------T--GAGCGC-----CTCTGC----GGG------------------------CCCGACGAGGGGCGACTGGCGGGTGGGGAGCGTGAC i papHam1.Contig39452 C 0 C 0 s ponAbe2.chr2b 3044521 83 + 135000294 CCGCAGACCCCCTCCCT--------TCCCCAG--GCATCCC-------------T--GAGCAC-----CTCTGC----AGG------------------------CCCGATGAGGGGTGACTGGCAGGTGGGGAGTGTGAC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10063754 81 - 23952694 T-GCAGGCTCCCTCCCT--------TCCCCAG--GCGTCCC-------------T--GAGCAC-----CTCTGC----GGG------------------------CCTGACGAGGGGCGACTGGG-GGTAGGGAGTGTGAC i panTro2.chrY C 0 C 0 s turTru1.scaffold_110801 8197 100 + 44955 CCGCAGACCCCCCCACC--------CCTCCCACGGCCAGTCGTGGACTTGGTGGC--TCGTGGAGCGCCTCCGT----GGG------------------------CCCGAAGGGCACAGAC-GATGGG-TGGGGG-ATGAC i turTru1.scaffold_110801 C 0 C 0 s felCat3.scaffold_100116 3414 103 + 44098 CCGTGGACCTTTC------------TCCCCCGCCCCGGGTC-------------C--TGGTGG-----CCCCGG----GAAGAAACGCCTTTTGTTTGGCGGGTTCCCGATGGGGGGACGA-ATTGGGTTGGGGG-GCGAC i felCat3.scaffold_100116 I 1 C 0 s myoLuc1.scaffold_60868 1473 84 - 1759 CCCCGGGCCCCCCCGTG--------TCCCTCGGAGTGTCTC-------------C--ACGTGG-----CTCCGT----GGG------------------------CCCGATGGGGTGTTTCTGCTGGGTTGGGGG-ACGAC i myoLuc1.scaffold_60868 I 226 C 0 s echTel1.scaffold_84696 606 95 - 1194 TCGCAGACCCCCCCACCGTCAGAGCCCGCCCG--GCGTCTC-------------CCTAGGCGC-----CTGGGTCGTGGAG------------------------TCCAGCGCGGGACGAC-GAT-GGTGTTGGGGACGAC i echTel1.scaffold_84696 N 0 C 0 s dasNov2.scaffold_219488 4 76 - 4087 ----AAGCCCCCCTTCT------CCTCGGCAG--ATGTCTC-------------C--GAGCAC-----CT-TGTGATGGAG------------------------CCC----CGTGGAGGC-GCT---TGGCGAGAGCGAC i dasNov2.scaffold_219488 N 0 C 0 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=193230.000000 s hg19.chrUn_gl000229 16686 82 + 19913 CCACCCTCCGTGAGAAAGCCTTCTCTAGTGATCCGAGAGGTGTGCCTTTGGGGTAGCGGA-TCCCCCGGCCTTCCGCCTCTCT s panTro2.chrY 10063835 82 - 23952694 CCACCCTAAGTGAGAAAGCCTTCTGTAGCGATCCGAGAGGTGTGCATTTGGGGTACGGGA-TCCCCCGGCCTGCCGCCTCTCT i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3044604 82 + 135000294 CCACCCTAGGTGAGAAAGCCTTCTGTAGCGATCCGAGAGGTGTGCCTTTGGGGTACAGGA-TCCCCCGGCCTGCCACCTCTCT i ponAbe2.chr2b C 0 C 0 s papHam1.Contig39452 613 81 + 2159 CCACCCTCGGCGAGAAAGCCTTCTCTAGCGATCCGAGAGGCGTGTC-TTGGGGTACCGGA-TCCCCCGGCCTGCCGCCTCTCT i papHam1.Contig39452 C 0 C 0 s micMur1.scaffold_20640 1731 67 + 10909 CCGCCTTGGGCGAGAAAGTCTTCTCTAGCCATCCCGGAGGCGCGTC----------------CCCCGTTCCCGGCGTCCCTCT i micMur1.scaffold_20640 N 0 C 0 s turTru1.scaffold_110801 8297 79 + 44955 GCACCCTCGGTGAGAAAGCCTTCTCTAGCGATCCGAGAGG-GAGCC-TTGGGGTACCGGA-CCCCCCAGCC-GCTGCCCCTCC i turTru1.scaffold_110801 C 0 C 0 s felCat3.scaffold_100116 3517 79 + 44098 GCGCCCTTGGTGAGAAAGCCTTCTCTAGCGATCCGAGAGG-GTGCC-TTGGGGTACCGGAACCCCCCAGTC-GCTGCCCCTC- i felCat3.scaffold_100116 C 0 N 0 s myoLuc1.scaffold_60868 1557 74 - 1759 -CGCCCTCGGTGAGAAAGCCTTCTCTAGCGATCCGAGAGG-GTGCT-T--GGGTACCGGA--CCCCCAGCC-GC-GCCCCTCC i myoLuc1.scaffold_60868 C 0 N 0 s echTel1.scaffold_84696 701 79 - 1194 CCGTCCTCGGTGAGAAAGCCTTCTCTAGCGATCCGCGAGG-GTGCC-TTGGGGTGCCGGA-CCCCCCAGTC-GCCGCCCCTCT i echTel1.scaffold_84696 C 0 C 0 s dasNov2.scaffold_219488 80 79 - 4087 CTGCCCTCGGTGAGAAGGCCTTCTCTAGCGATCCTCGAGG-GTGCC-TTGGGGTACCGGA-CCCCCCAGTC-GCTGCCCCTCT i dasNov2.scaffold_219488 C 0 C 0 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=-25217.000000 s hg19.chrUn_gl000229 16768 94 + 19913 CT-------------GCGT-TATG-GTAG-C-GCTGCTG----TAGCGAC------TAGCTCGCAGAGGAC----------ACTCCTCC------ACTTCCCCCTCGACGGGGTGAGGTGGGGAG-AGCTAGG-----------GTTCC s panTro2.chrY 10063917 94 - 23952694 CT-------------GCGT-TATG-GTAG-C-GCTGCCA----TAGCGAC------TCGCTTGCAGAGAAC----------CCTCCTCG------GGTTCCCCCTCGACGGGGTGAGGGGGGGAG-ATGGAGG-----------GTTCC i panTro2.chrY C 0 I 1 s ponAbe2.chr2b 3044686 94 + 135000294 CT-------------GCAT-TATG-GTAG-T-GCTGCCG----TAGTGAC------TCACTTGCAGAGGAC----------CCTCCTCC------ACTTCCACCTAGACGGGGTGGGGGGTGGAG-AGCGAGG-----------GTTCC i ponAbe2.chr2b C 0 I 1 s papHam1.Contig39452 694 101 + 2159 CT-------------GTGT-TGTG-GTAG-C-GCTGCCG----TAGCGAC------TCGCTTGCGGAGAAC----------CCTCCTCCTCCGCTGCCCCCTCCTCGATGGGATGAGGTGGGGAACAGTGAGG-----------GTTCC i papHam1.Contig39452 C 0 I 1 s micMur1.scaffold_20640 1798 117 + 10909 CTGGTCGCTGCCAAAGTGT-GCTGCGTTG-T-GTCCCCG----TGCAGTC------CTGTATGGGGGGGTCGAGGCGGTTGAGCCGACG------GGCGTCACCCCG-TGCCGCGCGGGCGGGCG-AGGTGCC-----------GCTCT i micMur1.scaffold_20640 C 0 I 1 s turTru1.scaffold_110801 8376 79 + 44955 ---CAAGCGTGCAGTGGGC-CACG-GTGGCC-ACTGCCA----GAGCCAC----GTTGGGCGGCAGAGGCC--------------CTCG------------CCCTCG-------------------CGGGAGG-----------GCTTG i turTru1.scaffold_110801 C 0 I 1 s echTel1.scaffold_84696 780 94 - 1194 ------------------TGCGCGCGTAG-CAACCGATG-----------------TTGCGCGTAGGCGAG----------AATGCTTT------TGCCCTCCCCCC-TTCCTCCGGGAAGGGTG-GGGGGGGTTCGCTTGTGCGTcc- i echTel1.scaffold_84696 C 0 C 0 s dasNov2.scaffold_219488 159 83 - 4087 ------------------C-TGCGCGTAG-C--CCGCCGAGTCTATCGGCTGGGGTTTGCATGTTAGGCAG----------AGCGTccc------cgccccccgccc---------------ggg-gggaggg-----------gtcc- i dasNov2.scaffold_219488 C 0 C 0 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=30777.000000 s hg19.chrUn_gl000229 16862 34 + 19913 CCTGCCTCCGCGGT--------------------GGGGACGGAGGG--CGGCTCGT s micMur1.scaffold_20640 1916 54 + 10909 TCTGTCCCCACGGTGTGTGTGGTGGACTTAGAAAGGCGAGAGAGAG--CGGCGCGG i micMur1.scaffold_20640 I 1 C 0 s papHam1.Contig39452 796 36 + 2159 CTGGACCCCGCGGT--------------------GGGGGCCGAGCGCACGGCTCGT i papHam1.Contig39452 I 1 C 0 s ponAbe2.chr2b 3044781 34 + 135000294 CCAGCCTCCGCAGG--------------------GGAGACTGAGGG--CGGATGGT i ponAbe2.chr2b I 1 C 0 s panTro2.chrY 10064012 34 - 23952694 CCGGCCTCCGCGGT--------------------GGGGACCGAGGG--CGGCTCGT i panTro2.chrY I 1 C 0 s ochPri2.scaffold_138517 19 32 - 1277 CCCCCTTCCGC--T--------------------GGGGGCCGGACG--CCGCCTCT i ochPri2.scaffold_138517 N 0 I 4 s turTru1.scaffold_110801 8456 33 + 44955 GCCGGCCCCGCGGT--------------------GGGG-CCGAGCG--CCGCTCTT i turTru1.scaffold_110801 I 1 C 0 s echTel1.scaffold_84696 874 33 - 1194 gccggccccgcggt--------------------gggg-ccgcgcg--cAGATCTT i echTel1.scaffold_84696 C 0 C 0 s dasNov2.scaffold_219488 242 33 - 4087 gccggccccgcggt--------------------gggg-ccgAACG--CCGCTCTT i dasNov2.scaffold_219488 C 0 C 0 e gorGor1.Supercontig_0048110 11733 220 + 15832 I a score=44828.000000 s hg19.chrUn_gl000229 16896 26 + 19913 CGCCTACT---GTGTGGCCCGCGCCTCCC s panTro2.chrY 10064046 26 - 23952694 CGCCTACT---GTGTAGCCCCCACCTCCC i panTro2.chrY C 0 C 0 s gorGor1.Supercontig_0000052 167138 26 - 249863 CGCCTACT---CTGTGGCCCGCGCCTCCC i gorGor1.Supercontig_0000052 I 12744 N 0 s ponAbe2.chr2b 3044815 26 + 135000294 CACTTACT---GTGTGGCCCGTGCCTCCC i ponAbe2.chr2b C 0 C 0 s papHam1.Contig39452 832 24 + 2159 CGTCTAC-----TGTGGCCCGCGCCTCCC i papHam1.Contig39452 C 0 C 0 s micMur1.scaffold_20640 1970 18 + 10909 -------T---CCGT-GCGCTTCCCTCCC i micMur1.scaffold_20640 C 0 C 0 s ochPri2.scaffold_138517 55 29 - 1277 CCTCTACCTCGCCGTGGCCCGTGCCTCCC i ochPri2.scaffold_138517 I 4 C 0 s turTru1.scaffold_110801 8489 24 + 44955 TGCCTACC-----GCGGCCCGCGCCTCCC i turTru1.scaffold_110801 C 0 C 0 s echTel1.scaffold_84696 907 24 - 1194 TGCCTACC-----GCGGCCCGAGCCTCCC i echTel1.scaffold_84696 C 0 C 0 s dasNov2.scaffold_219488 275 24 - 4087 GTCCTACC-----GCGGCCCGCGCCTCCC i dasNov2.scaffold_219488 C 0 C 0 a score=22160.000000 s hg19.chrUn_gl000229 16922 106 + 19913 CCTTCTGAGTCGCGGGAGGATCCCTCC-GTGCCGCG--CCGGCGT--------------------CCTAGCGGTT--GGG-AGGCTG------------CGCGAGCGG--------TGGCTGTGCCCGGCGTTCCCTCTGGCGCGT------G----------------AC---CCG s micMur1.scaffold_20640 1988 103 + 10909 CTTTTTTGGGGGGAGGGTCGTCGCACT-GGGCCACG--TGGGCGA--------------------ATT-GTGGTCGAGGG-GGACTG------------TCCCGGC-G--------CCCCGGTGCCGACCGGTCCCCCCCGTTGGT------G----------------GC------ i micMur1.scaffold_20640 C 0 C 0 s papHam1.Contig39452 856 110 + 2159 CCTCCCGAGTTGGGGGAGGATCCCGCT-GGGCCGGG-CCCGACGT--------------------CCTAGCGGAT--GGGAAGGCTGC-----------CGCGAGCGG--------CGGGTGCGCGTGGCACTCTGTCCGGCGCGC------G----------------AC--GCCG i papHam1.Contig39452 C 0 I 2 s ponAbe2.chr2b 3044841 106 + 135000294 TCTTCCGAGTCGGGGGATGATCCTGCT-GGGCCAGG--CCAGCAT--------------------CCTAGTGGTT--GGG-AGGCTG------------CACGAGTTG--------CGGCTGTGCCTGGCGTTCCGTCCGGCGCGT------G----------------AC---CCG i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064072 106 - 23952694 CCTTTCCAGACGGGGGAGGATCCCGCC-GGTCGGTG--CCGGCGT--------------------CCTAGCGGTT--GGG-AGGCTG------------CGCAAGCGG--------TGGCTGTGCCTGGCATTCCGTCCGGCGCAT------G----------------AC---CCG i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 84 141 - 1277 CCCTCTGGGTCGGGGGAGGGTCCCGCT-GGGCCGGG--CCGGTGTGTCCCGGTGCCTACTGTGGGCCTGACGGAG--GGG-CTCCTGTGGTCGCTCGCACGCACGCAC--------GCGGTGTGCGTCGTGTCGCCTCTGGCGTGT------G----------------GCCTTCCG i ochPri2.scaffold_138517 C 0 C 0 s turTru1.scaffold_110801 8513 132 + 44955 CCCTCTGAGTCGGGGGAGGGTCCCGCC-AGGCCGGCGTCCGGCGC----------------GGGGCCGTGTGTGCGCGGG-TGCGTG------------CGCGTGCGG--------TGACC-CGCGCGGTGGCGAGCCCGAGGTGG------GGTTCGGGGACGCACGGGCGTCCCG i turTru1.scaffold_110801 C 0 I 1 s echTel1.scaffold_84696 931 106 - 1194 CCCTACGAGCCGGGGGAGGGTTCTAATCGGGCCGGC--CTGGCGT--------------------CCGGGCGCTG--GGG-ATTCCG------------CGTGTGCGGCCCAGCTTCGTGAGTGTCCTGTG---CCCGGGGCGCGC------------------------------- i echTel1.scaffold_84696 C 0 C 0 s dasNov2.scaffold_219488 299 106 - 4087 CCCTCCGAGTCGGGGGAGGATCCCGCTAGGGCCGGG--CCGGCGT--------------------CCGGCCGTGT--G-----TCCG------------CGCGCGTGTCTC-----CGGGAGGGAAATgggggcctccgggcccgcccgccc------------------------- i dasNov2.scaffold_219488 C 0 C 0 a score=-12212.000000 s hg19.chrUn_gl000229 17028 87 + 19913 CT---------------------------------------------CCGCTGCGAGCCGTCT----------C--TC-CACCCGCTCCC--------------------CTGAGGAGCAGCGACCAGTGT--------CGACGACC----GCGTTTGTGTGGCACGGG--GTTGGGCC s micMur1.scaffold_20640 2091 92 + 10909 CC---------------------------------------------CTGCTGTGGCCTGCCT----------CGGCC-AGCCCTCTTCC--------------GTTA--CTGCGGGGGAGGGATTTTTCG--------CACGGACTCGAGGCGGTT-----GCACGAG--GGGGGGCC i micMur1.scaffold_20640 C 0 I 230 s papHam1.Contig39452 968 89 + 2159 CT---------------------------------------------CCGCTGTGAGCCGGCT----------C--TC-CGCCCGCTCCT--------------------GTGCCGAGCCGCGACCGGTGC--------CGATGACC----GCGTTTGCGTGGCGCGGGGTGTGGGGCC i papHam1.Contig39452 I 2 C 0 s ponAbe2.chr2b 3044947 87 + 135000294 CT---------------------------------------------CCGCTGTGAGCCGGAT----------C--TC-CACCCACTCCC--------------------CTGCGGAGCAGCGACCGGTGC--------TGACGACC----GCATTTGCATGGCACGGG--GTTTGGCC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064178 87 - 23952694 CT---------------------------------------------CCACTGTGAGCCGGCT----------C--TC-CGCCCGCTCCC--------------------CTGGGGAGCAGCGACCAGTGC--------CGATGACC----GTGTTTGCGTGGCACGGG--GTTGGGCC i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 225 162 - 1277 CTTGCCACCTGGGGCCCTGGGGTTGTGTGTGGCTTTGTCCCGTGCTGCCCCTGTGGCCCTGGTGTGGGGGTGGC--TC-TGCTCGCTTCCCGCCCTGGCTTGCCGTTGGCCCGCTGGCCGGTCACCGCCGG--------CGAGGGTG----GTGCGGTGGGGCCACGGG--TTTGGGCC i ochPri2.scaffold_138517 C 0 I 20 s turTru1.scaffold_110801 8646 89 + 44955 ----------------------------------CTCCCCAGTCCCGCAGCCGCGAGGAGCCC----------G--TCGCGCCTGCCCTC--------------------GCCGCGAGTCGCGGCCGGGGG--------CG----------GTGTGTG---GGCACGGT--GCGGGTC- i turTru1.scaffold_110801 I 1 C 0 s echTel1.scaffold_84696 1037 69 - 1194 --------------------------------------------------GCGTAAGCGGCGC----------T--CC-------CTCTC--------------G-----CCG------CGCCCCTGGGGAGCGCTCCCCGGCGAAC----G---------CACCTGGG--ACCGGAC- i echTel1.scaffold_84696 C 0 C 0 s dasNov2.scaffold_219488 405 77 - 4087 cc---------------------------------------------tcgccgcgggcggctc----------t--cc-gctccgctccc--------------ggcc--ccg----gccgccgctggggg--------tggcggtc----g---------ggcacggg--tcgggcc- i dasNov2.scaffold_219488 C 0 C 0 a score=631.000000 s hg19.chrUn_gl000229 17115 43 + 19913 GCCTGG-CCATGGGAAG-----CTTCCCAAGTGGGGG--GCG--CGCCGGTCT s micMur1.scaffold_150506 25 43 + 986 GCTGGG-CCTCGGTGTC-----CGTCCGTCGGGCGCG--GCG--CCCCTTCCC i micMur1.scaffold_150506 n 230 C 0 s papHam1.Contig39452 1057 49 + 2159 GCCTGGTCCTTGGGGAGCGAGCCGTCCCCACGGGGTG--GCG--TGCCGGTCT i papHam1.Contig39452 C 0 C 0 s ponAbe2.chr2b 3045034 45 + 135000294 GCCTAG-CCCTGGGAAG-----CATCCCAAGTGGGGGGAGTG--CTCCGGTAT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064265 43 - 23952694 ACCTGG-CCCTAGGAAG-----CATCCCAAGTGGGGG--CCA--CGCCGGTCT i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 407 38 - 1277 GCGTCG-GCCTTGGGAG-----CGTTCCT-----GCG--GGG--TTACGGCCC i ochPri2.scaffold_138517 I 20 C 0 s turTru1.scaffold_110801 8735 35 + 44955 GCCTCG-CTCGGGAGCG-----TTTCCCT-----GGG--GCG-----CGAGCC i turTru1.scaffold_110801 C 0 C 0 s echTel1.scaffold_84696 1106 31 - 1194 G-GTCG-TCC--GAGCG-----CGTGCCGGACGGGGG--GCG----------- i echTel1.scaffold_84696 C 0 N 0 s dasNov2.scaffold_219488 482 43 - 4087 gcctcg-gcc--gggag-----cgctcccggcgggAT--GTGGGCACCAGACT i dasNov2.scaffold_219488 C 0 N 0 a score=20111.000000 s hg19.chrUn_gl000229 17158 66 + 19913 CCCGGAGCTTGACCGG---GTCGGAGGATG-GACG--AGAAACGAGCAACCTAG----CCCTGGCAT-TGGGTTTGT s micMur1.scaffold_150506 68 61 + 986 ACCGGCCTTGGGACCG---GACGGGAGACG-AATG--AAGA-----CGGTATTT----TAGTCGCGT-TGGCGGTGC i micMur1.scaffold_150506 C 0 n 0 s papHam1.Contig39452 1106 68 + 2159 CCCGGAGCGGGACCGG---GTCCG-GGACG-GACG--AGAAACGGGCGACATGT-GGCCCCTGGTGT-TGGGCTTGT i papHam1.Contig39452 C 0 C 0 s ponAbe2.chr2b 3045079 66 + 135000294 CCCGGAGCTTGACTGG---GTCGGAGGATG-GACG--AGAAACGAGCAACGTGG----CACTGGCGT-TGGGTTTGT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064308 66 - 23952694 CCCGGAACTTGACCGG---GTCGGAGGATG-GACG--AGAAATGAGCAACGTGG----CCCTGGCGT-TGGGTTTGT i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 445 75 - 1277 TCGGGACCGGGGCCCGGATGTTGGCGGATG-GAGGCCGGGATCCGGCAGCGGGTAGGCGCCCGGCGTGTGGGCGTT- i ochPri2.scaffold_138517 C 0 C 0 s turTru1.scaffold_110801 8770 61 + 44955 CCGGGGGTCGGACTCAGATGAAGGCGGATGTGGCG--AGGA-CGGGCGGAGGAG-----------GT-TGAGTTTG- i turTru1.scaffold_110801 C 0 C 0 a score=26891.000000 s hg19.chrUn_gl000229 17224 54 + 19913 GGCTGA--GGTCGCTTTGGGG----TCCC-GATGGCGGG-ACC--------CGGGCTCATGAGGCGGGT-C s micMur1.scaffold_20640 2413 57 + 10909 GGACGG--GGTCGCTCTCGGGAgcccccc-ggtggcggg-gcc--------gtggcccgcg-ggcgggT-C i micMur1.scaffold_20640 I 230 N 0 s papHam1.Contig39452 1174 57 + 2159 GGCTGA--GGTTGCTTCGGGG----CCCCTGGTGGCGGGACCC--------GGGGCTCGCGAGGGGGTTGA i papHam1.Contig39452 C 0 C 0 s ponAbe2.chr2b 3045145 55 + 135000294 GGTGGA--GGTCATTTCGGGG----TCCT-GATGGTGGGACTC--------TGGGCTCGTGAGGCAGGT-C i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064374 55 - 23952694 GGCTGA--GGTCGCTTTGGGG----TCCC-GATGGCGGGAACC--------AGGGCTCGTGAGGCGGGT-C i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 520 55 - 1277 -GGCGG--TGTCGCGTTGGGGG---CCCC-GGTGGGGGGGCCT--------CAGGCGCGCGTCGGGGAA-C i ochPri2.scaffold_138517 C 0 I 2 s turTru1.scaffold_110801 8831 64 + 44955 GGCGGACGGGTCCCTCCGTG-----TCAC-GCGGGGGGAAACCGTCGCACAcgggccccggcggcgggg-c i turTru1.scaffold_110801 C 0 C 0 a score=105409.000000 s hg19.chrUn_gl000229 17278 119 + 19913 TTGGT---------------GGGTG--CTGAGGGCCG--TCCGGCGTCCTAGGCGGGTCGCCGCAGG-ACCTCCCTCGTGT-CTGTGGCGGTGGGATCCCGTGGCCGTGTTTTCCTGGTGG--ACCGGCCAT-----GCCTGAGGTT s micMur1.scaffold_98324 2 118 + 1741 TTGAC---------------TGGCG--GTTAGGGCCG--GCTGGCGTCACGGGCA---CGCCGCGGGTACCGCTCCCGTGTGTTGGGGCGGTGGGATCCCGCGGCGTTGTTTTCCCGGTGG--CCCGGTCGC-----GTCCGGGGTC i micMur1.scaffold_98324 N 0 C 0 s papHam1.Contig39452 1231 121 + 2159 TCGGT---------------GGGCTGCCCAAGGGCCG--TTCGGCGTCCCAGGCGGGGCGCTGCGGG-ACCGCCCTCGTGT-CTGTGGCGGTGGGATCCCGTGGCCGTGTTTTCCTGGTGG--CCCGGCCGC-----GCCTGAGGTT i papHam1.Contig39452 C 0 I 117 s ponAbe2.chr2b 3045200 119 + 135000294 TCAGT---------------GGGTG--CCAAGGGCCG--TCCGGCATCCTAGGCAGGGTGCCGCGGG-ACCTCCCTCGTGT-CTGTAGTGGTGGGATTACGTGGCCAAGTTTTCCTGGTGG--CCTGGCTGT-----GCCTGAGGTT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064429 119 - 23952694 TCGGT---------------GGGTG--CCGAGGGCCA--TCTGGCGTCCTAGGCGGAGTGCCGAGGG-ACCTCCCTCGTGT-CTGTGGCGGTGGGATCCCATGGCCGCGTTTTCCTGGTGG--CCCGGCCAT-----GCCTGAGGTT i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 577 120 - 1277 GTGGG---------------GGTCG--CTGGAGGCGGGCTCCGGTGTCCCAGGCG---TGTCACGGG-ACCGCCCGGGTGT----GGGCGGTGGCATCCCGTGTC--TGTTTTCCGGGAGGGACCCGGCTTTCGTTGGCCCGAGGTG i ochPri2.scaffold_138517 I 2 C 0 s turTru1.scaffold_110801 8895 124 + 44955 -cgggTCGTGGGAGACCCCAGGGTG--GCCGGGGCCG--GCCGGCGTCCCAGGCG-----TCGTGGG-ACCGCCCTCGTGT-GTGTGGCGGTGGGACCCCGCGCT--CGTTTCCCTGGCGGG-CCCGGTCGT-----GCCTCGG--- i turTru1.scaffold_110801 C 0 C 0 a score=17683.000000 s hg19.chrUn_gl000229 17397 102 + 19913 TCTCCCCGAGCCGCCCCTCTGCGGGCTTCCGGGTGCCCTTGCCCT-CGCGGTCCCTGGCCTTGC-------GTCTGTGCCCCCCTCCCCGC-------CCGCGTATCCTCTCTCCCC s ponAbe2.chr2b 3045319 104 + 135000294 TCTCCCCAAGCTGCCCCTCTGCGGGCTCCTGGGTTACCTTGCCCT-TGCGGTCCCTGGACTTACC-----TGTTTGTGCCCCCAACCCCGA-------CCGCGGATCCTCTCTCCCC i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064548 104 - 23952694 TCTCCCCGAGCCGCCCCTCTGTGGGCTCCCGGGTGACCTTGCCCT-CGCGGTCCCTGGTCTTTCC-----TGTCTGTGCCCCCCACCCCAC-------CTGCGGATCCTCTCTCCCT i panTro2.chrY C 0 C 0 s micMur1.scaffold_98324 120 87 + 1741 --TCCCC-----TCTCTCCCGCGGGCTTTTCG--TGCCCCGCCCT-GGTGGCTCTCGGCCTCTC-------GGAGGCGCCCGCTCCCCCCT-------C------TCTCTTCTTCCC i micMur1.scaffold_98324 C 0 C 0 s tupBel1.scaffold_97899.1-48641 16948 99 + 48641 TCCCCCCGCGCTTCCCCCGCCCGGGCCTCTCGCGCCTTTTGCCGTGCGTGG-----GGCCTCTC-----------GAGCCTCCATCCCGCCGCTGTCGCCGC--GTCCTCGTTGGCC i tupBel1.scaffold_97899.1-48641 N 0 N 0 s ochPri2.scaffold_138517 697 78 - 1277 --TTCCCTCGCGGCTCCCCGTCGCGCTTCTGG--TGCCTCTCCCC-CGTGGTCTGATGCCATCCCCCCCATGTGGGTACCCCC---------------------------------- i ochPri2.scaffold_138517 C 0 C 0 s turTru1.scaffold_110801 9019 97 + 44955 ----CCCTTCCTGTCCCTGGGCGGGCGCCCCTGCGCCCCTGCCC--CGCGGCCCTCGCCGCTGT-------GTGTGTGCGTgccgccccct-------ccccgtggccgccggccct i turTru1.scaffold_110801 C 0 C 0 e papHam1.Contig39452 1352 117 + 2159 I a score=27726.000000 s hg19.chrUn_gl000229 17499 183 + 19913 GAGCGGCTCACCGGC------TTAGGCTG-TGGTGGTCCCGT----CTGGGACCAAACCCGGCTCC-GCCTTGTGTGGCGGCGCCACC---GCCGGC--CACTTGTTGGCCCGTTGTCCGTGTCCCTG-GGCG-C---TCGC-CTTCG---GGACCA------GGTCGGCGG--CGCCCCGCAT-GGGCCTGGTGT---GAGCCCGGAGGG---TATGGGGTCG s micMur1.scaffold_98324 207 194 + 1741 CACCCGCTGCCCGGCCGTCCCCCGGGGAG-CGTTCGCCCGACCGCGCTGTGCCCGAACCTGACCTCGGCCGCGAGGGAGGGTGTCGCCCCGGCCGGC--CAC------GGCCGTCGGCGGCGTCCCCCTGGCGCC---GTGC-CTTGGTTTGAAC--------GGTCTGCGGGCCCCTCCGCGT--GGCGGGGTGGAACGAACCCGAGGGG---CGGGCG---- i micMur1.scaffold_98324 C 0 C 0 s papHam1.Contig39452 1469 183 + 2159 GAGCGGCTCACCGGC----TTTTATGCTGTTGGCCGCCCCGT----CTGGGCCCGAACCCGGCTCC-GCCTTCT--GGGGGCGTCGCC---GCCGGCCACACTGGTTGGCCCGGTGTCCGCGTCCCCACGGTG-C---GCGC-CTTCG---GGACC-------GGTcggcgg--cgccgcgcgtggggcccggtgg---gcgcccggAGGG---TTTGGG---- i papHam1.Contig39452 I 117 I 101 s ponAbe2.chr2b 3045423 180 + 135000294 TATTGGCTCACCGGC------TTAGGCTG-TGGTGGCCACGT----CTAGGACAAAACCCGGCACC-GCCTTGT---GGGGCACCGCT---GCCGGC--CACTGGTTGGCCTGTTGTCCGTGTCCCCG-GGCG-T---ACGC-CTTCG---GGACCA------GTTCGGCGG--CACACCGTGT-GGGCCTGGTGG---GTGCCGGGAGGG---TTTGGGGCCA i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064652 180 - 23952694 GAGCGGCTCACCCGC------TTAGGCTG-TGGTTGCCCCGT----CTGGGACCAAACCCGGCTCC-GCCTTGT---GGGGCGCTGCC---GGGGGC--CACTGGTTGGCCCTTTGTTCGTGTCCCCG-GGTG-C---GCGC-CTTCG---GGACCA------GGTCGGCGG--CTCCCCGCGT-GGGTCTGGTGG---GCGCCCGGAGGG---TTTGGAGTCG i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 775 113 - 1277 ----------------------------------------------------------------------------------CTCGCC---GCCCGC--TGC-----GGCCTCGTGTCGCTGGCGTGT-GGCG-TTGAGCGCTCTTCA---GGGTCGGGGGTCGGTTGGCTG--CGACGTGTGT--GGCCTGCGGT---GTGC---GGGGG---CTGGCGTTT- i ochPri2.scaffold_138517 C 0 I 9 s turTru1.scaffold_110801 9116 180 + 44955 ccccggcccccagcc------ctccgcgc-ccccTTCCCCGT----CTGGGATCGAGCCGGCCTCG-CCCACGT--GAGGGTGTcgcccgccccggc--cgc------cgcggccggcggcgtccccg-ggcggA---GTGC-TCACG---GTCCCTGAG---GCGGGGGGG--AGTCGGGCGC--GGCGGCGGAG---GCGTGTGGCGGGGCACGTGGG---- i turTru1.scaffold_110801 C 0 C 0 a score=13234.000000 s hg19.chrUn_gl000229 17682 86 + 19913 GCGTGCAGCGCGCGCAGGGAAGAGGG-------T-----TCTGGGGGCTGGCCGCGAT-GGCGG-----CGGCGGTGGGGAAGCCGCGGGCC---------------------------CGCCGA--AGGCCA s micMur1.scaffold_98324 401 105 + 1741 ----GTCGCGTGTGCGTTGAAGGGGGAGAGCTTT-----CCCGGGAGCGGCGTGCGAc-cgcgg-----cggcggtcgg---gccccgggccccgc-----gtggcgcgcgg---gggTCGCCGA--AGGCGT i micMur1.scaffold_98324 C 0 C 0 s panTro2.chrY 10064832 86 - 23952694 GCCTGCGGCGCGTGCAGGAAAGAGGG-------T-----TCCGGGGGCTGGCCGTGAC-GGCGG-----CGGCGATGGGGGAGCCGCGGGCC---------------------------CGCCGA--AGGCCA i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3045603 86 + 135000294 GGCTGCAGCGCATGTGAGGAAGAGGG-------T-----TCTGGGGGCTGGCCATGAT-GGCGG-----TGGTGGTGGGGGAGCCGTGGGCC---------------------------CGCCGA--AGGCAA i ponAbe2.chr2b C 0 C 0 s ochPri2.scaffold_138517 897 71 - 1277 GTCGGAGGTGCGTGCGCGTGAGGGGT-------------------GGCTGAGTCGCAC-GGTGG-TCCCCGGCCGTGTGT--GGCTTGTGCC---------------------------TG------------ i ochPri2.scaffold_138517 I 9 C 0 s turTru1.scaffold_110801 9296 124 + 44955 GCGGCCGGTGTGCGCGCGGGAGAGTG-------TTGTTGTCGCGGGGCTGGCCGCGGCTCGTGGGTGTTTGGCGGTGGTG--GGCGCGAGCCCCGCGAGGGGGGGCACCCTGGTTGGGGGGCCGAGGAGGCCA i turTru1.scaffold_110801 C 0 C 0 e papHam1.Contig39452 1652 101 + 2159 I a score=57768.000000 s hg19.chrUn_gl000229 17768 76 + 19913 GTCGGC-----CGCTCCAGGTGCTGCGCGGGGCCGCCTTCGTGCTTGGAGGCCGCTGGCGGTGAGATCCCG---GGCACCGCGG-- s micMur1.scaffold_98324 506 68 + 1741 GCGGGCCTTGTCGTTCCGGGTGCT--GCGGGACCGCTCTCGTGCGCGGAGGCCACTGGCGGTGAGATCCC---------------- i micMur1.scaffold_98324 C 0 I 13 s papHam1.Contig39452 1753 65 + 2159 GTCGGC-----CGCTCCAGGTGCCACGCGGGGCCGCCTTCGTGCTCGGAGGCTGCCGGCGGTGAGACCCC---------------- i papHam1.Contig39452 I 101 N 0 s ponAbe2.chr2b 3045689 76 + 135000294 GTTGGC-----TGCTCCAGGTATCGGACGGGGCTGCTTTCGTGCTTGGAGGCCGCTGGCAGTGAGACCCCA---GGCAACACAG-- i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064918 76 - 23952694 GTCGAC-----CGCTCCTGGTACCGCGCAGGGTCGCCTTCGTGCTCGGAGGCCGCTGGTGGTGAGACCCTG---GGCACTACAG-- i panTro2.chrY C 0 C 0 s ochPri2.scaffold_138517 968 76 - 1277 GCTGCC-----TCCCCCTCCCCCCATGTGGGACCGCCCTTGCGCTTGGAGAGCGCCGGCGGTGAGATCCCG---CGTGGTGTGG-- i ochPri2.scaffold_138517 C 0 N 0 s turTru1.scaffold_110801 9420 77 + 44955 GTCGGC------GTCCTGGGTGCC--GCGGGACCGCCCCTGCGCT-GGAGGCCTCTGGCGGTGAGACCCCGTGTCGTGCCCCGGCG i turTru1.scaffold_110801 C 0 C 0 a score=20550.000000 s hg19.chrUn_gl000229 17844 109 + 19913 TCCGCCTCTCGTTCGCTGCCCAAACGTCGGGGCTGCCCC-GCGCCCGCCGCGCGTGAGTGGCCGCCGGTCCCTCGCGGCTGCCATGCACGGGTCGGGCGTTCTGCCTGGT s micMur1.scaffold_98324 587 61 + 1741 CCCG--GCGGGTTCGGCGTC-------TGAGGTCGCCCC----CTCGCTCCTCGCGGGCGTCCGGCGGCCCCTC------------------------------------ i micMur1.scaffold_98324 I 13 N 0 s ponAbe2.chr2b 3045765 109 + 135000294 TCCGCTTCTCGTTCGCTGCCCAAACGTCGGGGCTGCCCC-GCACCCGCCGCGTGTGAGTGGCCACCGGTCCCACATGGCTGCCGCGCATGGGTCAGGTGGTCTGCCTCCT i ponAbe2.chr2b C 0 C 0 s panTro2.chrY 10064994 109 - 23952694 TCCGCCTCTGGTTCGCTGCCCAAACATCGGGGCCGCCCC-GTGCCCGCCGTGCACGAGCGGCTGCTGGTCCCTCACAGCTGCCACGCACGGGTTGGGCGGTCTGCCTCCT i panTro2.chrY C 0 C 0 s turTru1.scaffold_110801 9497 77 + 44955 GCCGACTCGCGTCCG-TGCCC-----TTAGGATGGCCCCCGGGCCTCCCTCGCGTCGGCGCGCGTCCGCCCC---CGCCCGCCACG------------------------ i turTru1.scaffold_110801 C 0 N 0 a score=34637.000000 s hg19.chrUn_gl000229 17953 199 + 19913 --------TACACGTGGGCACGAAGGGTCGGGAGTGGTGAGCCCATCGGGGGGTGTTGTGTAGTGTGGGTGTATGGGATGTCCGGTTCGCCGCCCCATCACCCGGCTCCCACCGCCCCGCGCTGC-TCCCTCCCTCCCACACG-----CCAGGTCGACCGCCCTGCCGCA------------CCCATC----CTCGCGACTGGGATGCCGGGCTCATCCTCGCGAGGCC s panTro2.chrY 10065103 196 - 23952694 --------CGCACGTTGGTGCGAAGGGTTGGGAGTGGTGAGCAGGTCGGGGA----TGTGTCAAGTGGGTGTATGGGATGTCCGGTTCGCCGCGCCACCGCCCCCCTCCCACCGCCCCGCCTTGCTTCCCTCCCTCCCACATA-----CCCCGTTGCCTGCCCTGCCATG------------CCCATC----CTCATGACCTGGACTCCGGGCTCATCCTCGTGAGGCC i panTro2.chrY C 0 C 0 s ponAbe2.chr2b 3045874 199 + 135000294 --------CACACGTGGGTGTGAAGGGTCAGGAGTGGTGAGCCCATCGGGAGGTGTTGTGTCGTGTAGTTGGATGGGATGTCCAGTTTGCCACCCCAGCACCCCCCCACTACTGCCCCGCACTGC-TCCCTCCCTCCCACACG-----CCGGGTTGCCGGCCCTGCCACA------------CCCATC----GTCGTGACTGGGATGCCAGGCTCATCCTCGTGAGGCC i ponAbe2.chr2b C 0 C 0 s micMur1.scaffold_17924 4122 156 - 13500 TTCCCTTCCCCACGCGG-----------CAGGCTCGGCGA-------GGGGG------------------------------------------------------TCTCGCCGGCCTCCGCTGC-TCCCTCCTCCTCTCTCGCGGTTCCGGGTCGAccgggcgggcgcggggccgccggcccccgTCAGGTGTCGCGCCCGGGGTCCCGGCCCGGGGTCCCCGAGGTC i micMur1.scaffold_17924 N 0 N 0 a score=396992.000000 s hg19.chrUn_gl000229 18152 1761 + 19913 TGGAGGCCGCTTTCTACCtacttggttgatcctaccagtaccatatgcttgtctcaaagattatgccatacatgtctaagtacacagggccagtacagtgaaactgcgaatggctcattaaatcagttatggttcttttgatcgctcgctcctctcctactttgaaaactgtggtaattctagagctaatgcatgccgaagggcgctgacccccttcgtggggaagatgcgtgcatttatcagatcaaaaccaacccggtcagcccctctctggccccggccagggggtcgggtgccaccagctttggtgactctagatagcctcgggccaatcgcacaccccccgtggcagcgacgacccattagaacgtctgccctatcaacttttgatggtagtcgctgtgcctaccatggtgaccacgggtgatggggaatcagggttcaattctgtagagggagcctgagaaatggctaccacattcaaggaaggcagcaggcatgcaaattacccactcccgacccaaggaggtagtgatgaaacataccaatacaggactctttcgaggtcctgtaattggaatgagtccactttaaatcctttaacgaagatccattggagggcaagtctagtgccagcagccgcggtaattccagctcccatagcatatgttaaagttgctgcagttaaaaagctcctagttggatcttgggagcgggcgggcggtccgccaggacgcgagccaccgcctgtccccgccccttgcctcttggcgccccctcggtgctcttagctgagtgtcccgcagcccaaagcatttactttgaaaaaattagagtgttcaaagcaggtccgagccgcctggataccgcagctaggaataatggaataggaccgcggttctattttgttggttttcagaactgaggccaggattaagagggacggccgggggcattcgtattgtgccgctagaggtgaaattcttggactggcgcagttcagaccagagtgaaagcatttgccaagaatgttttcattaatcaagaacaaaagccggaggttcgaagatgatcagataccgtcgtagttccgaccataaacgatgccgactggcgatgtggcggcgttattcccatgaccccgctgggcagcttccaagaaacc--agtctttgggtttttaggttccgg-ggggagtatggttgcaaagctgaaacttaaaggaattggtggaagggcaccaccaggagtggagcctg-ggcttaatttgactcaacatgggaaaaatcacccggcccggacatggaccggattgacagattgatagctgtttctctgttccatgggtggtggtgcatggccttagttggtggagtgatttgtctggttaattccgataaccaatgagactctggcatgctaactagttacgtgacccccgagcggtcggcgtcccccaacttcttagagggacaagtggccttcagccatccgaaattgagcaataacagatctgtgatgcccttagatgtccgggactgcacgcgcgctacactgactggctcagcatatgcctaccctacgtggcagaggcgggtaacctgttgaaccccattcgtgatggggatgggggattgcagttattccccatgaaggaggaatttccagtaagttcgggtcataagcttgcctgaagtccctgccctatgtacacaccgcccgtctctactactgataggatggtttagtgaggtcctcggatc s panTro2.chrY 10065299 1743 - 23952694 CGGAGGCCGCTTTCTACCtacatggttgatcctaccagcaccatatgcttgtctcaaagattaagccatacatgtctaagtaggcagggccggt-ccgtgaaactgtgaatggctcattaaatcagttatggttcttttggtcactcgctcctctcctaattggaaaactgtggtaattctaaagctaatacatgccaaagggcgctgacctccttcgcggggaagatgcgtgtatttatcagatcaaaaccaacccagtcagcccctctccagcccgggccggagggtcaggtgccaccaacttttgtgactctagataacctcaggccaatggcatgcccccagtggcagcgacgacccattcgaaaatctgccttatcaactttcgatggtagttgctgtgcctaccacggtgaccatgggtgatggggaatcagagttcgactctgaagagggagcctgagaaacagctaccacattcaaggaaggcagcaggtgcaaaaattacccactcccgacccggggaggtagtgacgaaaaataacaatacaggactctttcgaggccctgtaattgaaatgagtctactttaaatcctttag-gaggatccattggagggcaagtctggagccagcagccacagtaattccagctccaatagcatatattaaagtt------gtttaaaagcccgtagttagatcttgggagtgggcgggcag-----------gctagccatggcccgtccccgccccttgcctctcagcaccccctcgatgctcttagatgagtgtcccgtggcccaaagcgtttactttgaaaaagttagagtgttcaaagcaggcccgagccacctagatatctcagctaggaatgatggaatagaacctcggttcttttttgttggttttcaggactgaggccatgattaagagggacggctgggggcattcgtattgtgccactagaggtgaaattcttggactggtgcagttctgacaagagctaaagcatttgccaagaatgttttcattaaccaagaatgaaagtcggagttccgaagacgatcagataccgtcgtagttccgaccataaacgatgccgactggtgatgcggcggcgttatttccatga-cccgctgggcagcttcccagaaaccaaagtctttggatttttgggttccca-ggcaagtatggttgcaaagctgaaacttaaaggaattggtggaagggcaccacaaggagtggagcctgcagcttaatttgactcaacatgggaaacctcacccggcctggacatggacaggattgacagattgataggtctttcttgattccatgggtggtggtgcatggccttagttggtggagtgatttgtctggttaattctgataatgaaggagactctggcatgctaactagttacacgacccccaagcggtcagcatcccccaacttcttagagggataagtggcatttagccactcgagattgagaaataacaggtctgtgatgcccttagatgtccggggctgcacgcgtgctgcactgactggctcagcgtgtgcctaccgtatgtggtagacgcgggtaacctgttgaacaccatt-gtgatggtgatcggggattgcaattattccccatgaatgacgaattcccagtaagtgcgggtcatagacttgcgtgaagtccctaccctttgtacacactgccagtcactactactgattggatggttcagtgaggcccttggatc i panTro2.chrY C 0 N 0 s ponAbe2.chr2b 3046073 1741 + 135000294 TGGAGGCCGCTTTCTACCtacatgattgatcctaccataaccatatgcttgtctcaaagattaagtcatacatgtctaagtacgcagggccggtacagtgaaactgcgaatggctcattaaatcagttatggttatttaggtcgcttgctcctctcctgcttggaaaac--tggtaattctagagctaatacatgccgaagggcactgaccccatttgcagggaagatgcacgcatttatcagatcaaaaccaacccggtcaggccctctctgtccccagccaaggggtcgggtgccgctggctttggtgaatctagataacctcaggccaatcgcatgcccccagtgacagcgatgacacattcgaacgtctgccctatcaactttcgatggtagtcgctgtgtctaccatggtgaccacgggtgatggggaatcagggtccaattctggagagggagcctgagaaacagctaccacattcaaggaaggcagcaggcgtgaaaattacccactctcaacccggggtggtagtgatgaaaaataacaatacaggacactttcgcggccctgaaattggaatgagtccactataaatcctttaacgaggatccattggagggcaagtctggtgccagcagccacggtaattccagctccaatagcgtatattaaagttgctgcaattaaaaagctcatagttggatcttgggagcgggcgggagg-----------gcgagccacaaaccgtccccacttcttgcctctcagtgccccatcgatgctcttagctgagtgtcccacagcccgaagtgcttactttgaaaaaattagggtgtttggagcaggcccaagccacctggataccacagctaggcatgatggaataggacagcagttctattttgttggttttcggaactgagtccatgattaagtgggacggccaggggcatttgtattgcactgctagaggtgaaattattggaccagcacagttcggaccagagtgaaagcatttgccaagaatgtttttattaatcaagaacgaaagtaagaagtttgaagatgatcagataccgtcgtagttccgaccataaatgatgccaactggtgatgcggcggggttatttccatga-cccgctgggcagtttccaagaaaccaaagtctttgggtttttggatttcagcagggagtatggttgcaaagctgaaacttaaaggaattggtggaagggcaccaccaggagtggagcctgtggcttaatttgactcaacatgggagaactcaccctgctgggacatggacaggattgacagattgatagctctttctagattccgtgggtggtggttcatggccttagttggtggagtgatttgtctccttaattgtgataatgaatgagactctggcatgctaactaattacgcgacccctgagcagttggcgtcccccaacttcttagagggacaagtggcattcaaccacccgagattgagcaataacaggtctgtgatgcccttagatgtccggggctgcacgcgtgctacaatgactggctcagcctgtgcctaccctacgtggcagatgcgggtaacctgttcaatcccattggtgatggggattggggattgcaattattccccatgaatgaggaattcccagtaagtgggggtcataggcttgcgtgaagtccatgccctttgtacacactgccagtcgctaatactgtttggatggtgtagtgagg---------- i ponAbe2.chr2b C 0 N 0