##maf version=1 scoring=autoMZ.v1 a score=1429.000000 s hg19.chrUn_gl000239 0 8 + 33824 GATCTCTC s gorGor1.Supercontig_0000485 1783 8 + 32581 GATCTCTC i gorGor1.Supercontig_0000485 N 0 C 0 s myoLuc1.scaffold_188662 243881 8 - 450730 GATCTCTT i myoLuc1.scaffold_188662 N 0 C 0 s eriEur1.scaffold_207704 9127 1 - 9713 -------T i eriEur1.scaffold_207704 N 0 N 0 a score=14437.000000 s hg19.chrUn_gl000239 8 76 + 33824 TATCGGCCTGCTCTGGGCCACAGAGACTGGCCCTGACGACTTCTCAGCTCCCGGTCAGCCCTGTCACCCTGGGCCA s gorGor1.Supercontig_0000485 1791 76 + 32581 TATCGGCCTGCTCTGGGCCACAGAGACTGGCCCTGATGACTTCTCAGCTCCCGGTCAGCCCTGTCACCCTGGGCCA i gorGor1.Supercontig_0000485 C 0 C 0 s myoLuc1.scaffold_188662 243889 73 - 450730 GATCATC---CCTTTGGCCCTAGAGACTGGCCTGAATTACTTCTCAACTCTTGCTCAGCCCTGTCACCCTGAGTCA i myoLuc1.scaffold_188662 C 0 N 0 a score=52594.000000 s hg19.chrUn_gl000239 84 588 + 33824 GTTCTTCATTGTACCTGGAGACAGAAACAGCCAGGATCATGGCAGGCTCTCTTTCGAAGGCAACAGGCAGGGCCACCAGGCTGCTGTGTGGCGAATACGACATTACCCAGAGAAGCGGCCTGAGAGGGCCCTCCGGCTCCTCCTGGCTCCCACCCACCTCCCACCTGGCTCCAGCCTACCTACCTGCGAGGTGGCTTTTGCAGCCTGGCAAACGCTCCCCAAGGCCACCATGCCTATGTGTACAGCCTTGTTGTTATTGTGGACAGTGTTCTCCCCTCAGAAGCTGACATTTTATACAGGTCACCAGATCAAATTTGGCAATGACtcgttttataaggtcaatatgtatttacaattactcacattatcttgagttctcaccgctgttgtgtccttcctgaattttcatgtcgcattgggtcagcttctcttctgcctttggagtccctgtttaatattacctttaggggcagtctgtcggtagcatatttttccaatttttgcttttggaagaaggctttgcttcAACCCAGTGGTGAGCACATGTGAGGCTGTTGTTTATTAATCGAATATTTCCCCC--ttttattt s gorGor1.Supercontig_0000485 1867 588 + 32581 GTTCTTCATCATACCTGGAGACAGAAACAGCCAGGATCATGGCAGGCTCTCTTTCGAAGGCAACNG-CAGGGCCACCAGGCTGCTGTGTGGCGAATACGACATTACCCAGAGAAGCGGCCTGAGAGGGCCCCCCAGCTCCTGCTGGCTCCCACCCACCTCCCACCTGGCTCCAGCCTACCTACCTGCCAGGTGGCTTTTGCAGCCTGGCAAACGCTCCCCAAGGCCACCATGCCTATGTGTACAACCTTGTTGTTATTGTGGACAGTGTTCTCCCCTCAGAAGCTGACATTTTATACAGGTCACCAGATCAAATTTGGCAATGACtcgttttataatgtcaatatgtatttacaattactcacattatcttga-ttctcaccgctgttgtgtccttcctgaattttcatgtcgcattgggtcagcttctcttctgcttttggagtccctgtttaatattacctttaggggcagtctgtcggtagcatatttttccaatttttgcttttggaagaaggctttgcttcAACCCAGTGGTGAGCACATGTGAGGCTGTTGTTTATTAATCGAATGTTTCCCCCCttttttttt i gorGor1.Supercontig_0000485 C 0 C 0 a score=175506.000000 s hg19.chrUn_gl000239 672 715 + 33824 ttgagacagagttttgctctgtcacccaggctgaattgcagtggcgtgatcttgacacactgcaacctctgccgcctggtttcaagcgattctcctgcctcagcctcccaagtagctgggatcataggtgtctgccaccatggccggctaattttttgggtttttagtagaggcggaatttcaccctgctggccaggctggtctcaatctcctgaccttgtgatccacccgcctcggcctcccaaagttctgcgatgacaggtgtgagcaactgtgcccagccTTCCTCTCCTTTTTTTTTTTTCCCCAAAAGAAACGCGGAGTTGGAGACAGACTTATTAGCATTGAAGGGAGAGATCTGATGAAGAGAAATGGGGCCACATTGAGGCAGTGTCCTGGGAGGAGCTGTGGTTTTTACGTCTGTCGGTGTTAGGGGGAAAGATGTGGACCAGGGTGGTAGCCAGTGGGCTAAGGGTGAGGCTCCCACCTCACAGGGAGGTGGAGAGAAAGACATGGAGACAGagagacagagacagagaggcagaaacagacagacccacagagagagagggaaacagagatgaagagacagaaacacacagacagacagtgatagaaaaagggagacacagaaatagagggacagatacagagatggagagaaagacagagacagatagagagacaCTaagagagacacagagagagaaagaga s gorGor1.Supercontig_0000485 2455 710 + 32581 ttgagacagagtttcgctctgtcacccaggctgaattgcagtggcgtgatcttgtctcactgcaacctctgctgcctggtttcaagcgattctcctgcctcagcctcccaagtagctgggatcacaggcgtctgccaccatggctggctaattttttgggtttttagtagagacggaatttcgccctgctggccaggctggtctcaatctcctgaccttgtgatccacctgcctcagcctcccaaagtcctgcgatgacaggtgtgagcaacagtgcccagccTTCCTCTCCTTTTTTTTNCCCCCC-AAAAGAAACGCAGAGTTGGAGACAGACTTATTAGCATTGAAGGGAGAGATCTGATGAAGAGAAANGGGGCCACNTTGAGGCAGTGTCCTGGGAGGAGCTGTGGTTTTTACGTCTGTCNGTGTTAGGGGGAAAGACGTGGACCAGAGTGGTAGCCAGTGGGCTAAGGGTGAGGCTCCCACCTCACAGGGAGGTGGAGAGAAAGACATGGAGACAGagagacagagacagagaggcagaaacagacagacacacagagagagagggaaacagagatgaagagacagaaacacacagacagacagtgatagaaaaagggagacacagaaacagagggacagatacagagatggagagaaagacagagac----aganagacantaacagagacacagagagagaaagana i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 746989 712 + 155361357 ttgagacagagtcttgttctgtctcccaggctggagtgcagtggca--atcttggctcactgcaacttccgacttctgggttcaagcgattctcttgcctcagcctcctgagtagctgggattacaggcgcccacgaccacacccggctaattttttgtgtttttagtagagacggaatttcaccctgctggccaggctggtctcgatctcctgaccttgtgattcacccgcctcggcctcccaaagtcctgccatgacaggtgtgagccactgcgcccagccttcctctcctttttttctTTTTCC-AAAAGAAACACGGAGTTGGAGACAGGCTTCTTAGCATTGAAGGGAGAGATCTGATGAAGAGAAGTGGGGCCACATTGAGGCAGTGTCCTGGGAGGACCTGTGATTTTTACGTCTGTTGGTGTTAGGGGGAAAGGCGTGGACCAGGGTGGTAGGCAGTGGGCTAAGGGTGAGGCTCCCACCTCACagggaggtggagagaaagagatggaaacagagagaaagagacagagaggcagaaaCagacagacacacagagagagagggagacagagatgaagagacagcaacacacagagagacagtgacggaaagagggagacacagaaacagagggacagatacagagacggagagaaagacagagacagacagagagacactgagagagacacagagagagaaagaga i panTro2.chrX N 0 I 9084 a score=51707.000000 s hg19.chrUn_gl000239 1387 576 + 33824 tggagacagagagacagagacagagaagcagaaacagagacagatacacagagagagcgagacatagatgaagagacagaaacacagagagacagtgatagaaagGGagacacagaaacagagggacagatacagagatggagagaaagacagagacagacagagagacactaagagagacacagaaagagatggagacagagagacagagacaggcagaaacagagacagacacac----agagggagacagagatgaagagacagaaacacacagagagacagtgatagaaagagggagacacagaaacagagggacagatacagagatggagagaaagac--agaCagacagagagacactaagagagacacagagagagaaagagatggagacagagaagcagaaacagagacagacagagagagagagggagacagagatgaagagacagcaacacacagagagatagtgatagaaagagggagacacagaaacagagggacagatacaaagaaagagagacactaagagagacacagagagagaaagactgacatatacatagaaagagGGAGAGA s gorGor1.Supercontig_0000485 3165 578 + 32581 tggagacagagagacagagacagagaagcagaaacagagacagatacacagagagagcaagacagagatgaagagacagaaacacagagagacagtgatag--agggagacacagaaacagagggacagatacagagatggagagaaagacagagacagacagagagacactaagagagacacagaaagagatggagacagagagacagagacaggcagaaacagagacagacacacagagagagggagacagagatgaagagacagaaacacacagagagacagtgatagaaagagggagacacagaaacagagggacagatacagagatggggagaaagacagagacagacagagagacactaagagagacacagagagagaaagagatggagacggagaagcagaaacagagacagac--agagagagagggagacagagatgaagtgacagcaacacacagagagatagtgatagaaagagggagacacagaaacagagggacagatacaaagaaagagaGACACTAAGAGAGACACAGAGAGAGAAAGACTGACATATACATAGAAAGAGGGAGAGA i gorGor1.Supercontig_0000485 C 0 C 0 e panTro2.chrX 747701 9084 + 155361357 I a score=48713.000000 s hg19.chrUn_gl000239 1963 184 + 33824 ggccgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcatgaggtcaggagatcgaggccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccaggcgtggtggcgggcacctgtagtcccagctactcgggaggctg s panTro2.chrX 756785 184 + 155361357 ggccgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcgggcagatcacgacgtcaggagatcgaggccatcctggctaacacagtgaaaccccgtctctcctaaaaatacaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctactcgggagcctg i panTro2.chrX I 9084 C 0 s gorGor1.Supercontig_0000485 3743 184 + 32581 ggctgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggcaggctgatcacgaggtcaggagattgaggccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccaggtgtggtggcaggcacctgtagtcccagctactcgggaggctg i gorGor1.Supercontig_0000485 C 0 I 215 a score=8336.000000 s hg19.chrUn_gl000239 2147 97 + 33824 aggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcggagatcgagccactgcactccagcctgggtgacagagcgagactgtcttt s panTro2.chrX 756969 97 + 155361357 aggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagccgagatggagccactgcactccagcctgggtgacagagcgagactctgttt i panTro2.chrX C 0 C 0 e gorGor1.Supercontig_0000485 3927 215 + 32581 I a score=8591.000000 s hg19.chrUn_gl000239 2244 34 + 33824 caaaaaaGTAAGTAAATAAATAAATAATGGGGGG s panTro2.chrX 757066 34 + 155361357 caaaaacataaataaataaataaataaTGGGGGG i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 4142 34 + 32581 caaaaaagtaagtaaataaataaataaTGGGGGG i gorGor1.Supercontig_0000485 I 215 C 0 a score=426876.000000 s hg19.chrUn_gl000239 2278 905 + 33824 GG-AGCTTCCTCCATCTTTATTTTAGAGACATGGGGGATTTTCAGGTAAGGTGTTAGGATATGAAAGCAATGTCCTCTTCCCCTGGGGAGAGGCTAAAATAGGGAGAGATG-------GGGAAGGAAATCCTTGAGGGAGCCCCAGGCATTAGTCCAACCAGGAGCACTAAGGGCCAGAACCAGAACATGTTACTTGGCCTGAGTGTGACTTCTGGTGTAAGAAAAACAGACCCTGAAGGTCTTTGTGAAACTTTAGTTTCTCCTTCTAAAGAAATGCCTGTTTATTTTACAGATGCAAAGAGTAACCACATTAATTCCAAGGCAGTTTTCCAAAGTATTATAATGATCCCAACAAGAAAATGGCATTTCAGTTCAAATGTTACTGAGTTCCAGGGAAACGGTTAGATACCCAGGCTGTGGAACTGGGTTGGATGCAGGACTCAGGATCCAGAGACAAGGAAGGCAGCATCATAAGTCAGCCACCCATAAATGCAATATTATAGTAGTCCCAATTTCTTTTTGAGGTTTGTTCCAATCAACAGCAACTGAAACACAACTCAGAGTAAGTTAGGCAGAGAAAGAAAATTGTTGAACTAATATAACTGTGAGATCCTATGATGGAGCTGACCTCAGGATTCCCAAGGACTTAAGAAATCTC----------------------------tagatagatagatagatagatagagacatagatagaga---------aaaaaatagatatagatagaataaatagat----gataaatacataggatag--------ataaatagctagatgataggtaatatatatagatatgtagatgtttaatggatacataaaatagg----tagataaataggatggatagatacataattgatagataactaggacagatagatacatgatagatacattgatacacaggatagataaatgataggtagatag s rheMac2.chr3 158240489 916 - 196418989 -GGAGCTTCCCCCATCTTTATTTTAGAGACAGGGGGGATTTTCAGGTAAGGTGTTAGGATATGAAAGCGATGTCTTCTCCTGCTGGGAAGAGGCTAAAATGAGGAGAGAAGAGAGACAGGGAAGGAAATCTTTGGGGAAG-CCCAGGCATTAGTCCAACCAGGAGCACTAAGGG------CCAGAACATATTACTTGGCCTGAGTATGATTTCTGGTGTAAGAAAAACAGACCCTGAAGGTCTTTGTGAAACTTTAGTTTCTCCTTATAAAGAAATGAGTGTTTATTTTACAGATGTGAAGGGTAACCACATAAATTCCGAGGCAGTTTTCCAAAGTATTATAATGATCCCGACAAGAAAACGGCATTTCAGTTCAAATGCTACTGAGTGCCAGGGAAACCGTCAGATACCCAGGCTGTGGAACTGGGTTGGATGCAGGACTCAAGATCCAGAGAGAAGGAAGGCAGCGTCACAAGTCAGCCACCCATAAATGCACTGTTATAACACTCCCAATTTCTTACTGAGAGTCATTCCAGTCAGCAGCAACTGAAACACAACTCAGACTAAGTTAGGCAGAGAAAGAAGATTGTTGACCTAATATAACTGTGAGATCCTACAACAGAGCTGACCTCAGGATTCCCAAGGACTTAAGAAATCTC------------------------tagatagagagatagatagatacatagagacatagatagataaatagatagagataataaatagagatagaataaatagat----gataaatacataggatagacagacaaatagatggctagatgagaggt----------tatatgcagatatttaatagatacataaaataggtagatagataaatagggtggatagatacataact----gataactaggatagatagatacatgatagatatatacatacataggatagataaatgataggtagatag i rheMac2.chr3 N 0 I 252 s panTro2.chrX 757100 949 + 155361357 G----CTTCCTCCATCTTTATTTTAGAGACATGGGGGATTTTCAGGTAAGGTGTTAGGATATGAAAGCAATGTCCTCTTCTCCTGGGGAGAGGCTAAAATAGGGAGAGATG-------GGGAAGGAAATCCTTGGGGGAGGCCCAGGCATTAGTCCAACCAGGAGCACTAAGGGCCAGAACCAGAACATGTTACTTGGCCTGAGTGTGACTTCTGGTGTAAGAAAAACAGACCCTGAAGGTCTTTGTGACACTTTAGTTTCTCCTTCTAAAGAAATGTGTGTTTATTTTACAGATACAAAGGGTAACCACATTAATTCTGAGGCAGTTTTCCCAAGTATTATAATGATCCCAACAAGAAAATGGCATTTCAGTTCAAATGTTACTGAGTGCCAGGGAAACGGTTAGATACTCAGGCTGTGGAACTGGGTTGGATGCAGGGCTCAGGATCCAGAGACAAGGAAGGCAGCATCACAAGTCAGCCACTCATAAATGCAACGTTATAAGAGTCCCAATTTCTTTTTGAGGTTTGTTCCAATCAACagcaactgaaacacaactcagactaagttaggcaaagaaagaagattgttgacctaatataactgtgagatcctatgatggagctgacctcaggATTCCCAAGGACTTAAGAAATCTCtagatagagagataaatagatagatagatagatagatagatagatagatagagacatagatagatag------agaaaaaataggtatagatagaataaatagatgatagataaatacataggatagatagataaatagatagctagatgatacataatatatatagatatgtagttatttaatagatacataaaataggtagatagataaataagatggatagatatgtaattgatagataactaggacagatagatacatgatagatacattgatacacaggatagataaatgataggtagatag i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 4176 906 + 32581 N----CTTCCTCCATCTTTATTTTAGNGACATGGGGGATTTTCAGGTAAGGTGTTANGATATGAAAGCAATGTCCTCTTCCCCTGGGGAGAGGCTAAAATAGGGAGAGATG-------GGGAAGGAAATCNTTGGGGGAGCCCCAGGCATTAGTCCAACCAGGAGCACTAAGGGCCAGAACCAGAACATGTTACTTGGCCTGAGTGTGACTTCTGGTGTAAGAAAAACAGACCCTGAAGGTCTTTGTGAAACTTTAGTTTCTCCTTCTAAAGAAATGCNTGTTTATTTTACAGATGCAAAGNGTAACCACATTAATTCCAAGGCAGTTTTCCAAAGTATTATAATGATCCCAACAAGAAAATGGCATTTCAGTTCAAATGTTACTGAGTTCCAGGGAAACGGTTAGATACCCAGGCTGTGGAACTGGGTTGGATGCAGGACTCAGGATCCAGAGACAAGGAAGGNAGCATCATAAGTCAGCCACCCATAAATGCAATATTATAACAGTCCCAATTTCTTTTTGAGGTTTGTTCCAATCAACagcaactgaaacacaactgagactaagttaggcagagaaagaaaattgttgacntaatataactgtgagatcctatgatggagctgacctcaggATTCCCAAGGACTTAAGAAATCTC--------------------------------tagatagatagatagatagagacatagatagaga---------aaaaaatagatatagatagaataaatagatgatagataaatacataggatagatag----ataaatagctagatgataggtaatatntatagatatgtanatgtttaatagatacataaaaaagg----tagataaataggatggatagatacataattgatagataactaggacagatagatacatgatagatacattgatacacaggatagataaatgataggtagatag i gorGor1.Supercontig_0000485 C 0 C 0 a score=20004.000000 s hg19.chrUn_gl000239 3183 127 + 33824 ataagatggatagatacat---agataaatagattagataggagagat-gatagata------------ggtagatagatagatagatagttagaataagatggttgatagatagtcacatagaataagaaggatgatagat----g s gorGor1.Supercontig_0000485 5082 144 + 32581 ataagatggatagatacat---agataaatagattagatagganagatagatagatagatagatagatagatagatagatagatagatagatagaataagatggatgatagatagtcacatagaataagatggatgatagatagatg i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 758049 131 + 155361357 ataagatggatagatacataagagatacataggatggata-gatagataggtagataga---ataagatggatgatagatagatagatagatagaataagatggatgatagatagatagatag-ata--------gatagata---g i panTro2.chrX C 0 C 0 e rheMac2.chr3 158241405 252 - 196418989 I a score=362143.000000 s hg19.chrUn_gl000239 3310 781 + 33824 atagagagagggatagaaagataggatagatgatggg--------tagatggttagatagataggatagatgatagatagatag-------------ataatagatagatggaATAAATATCGTATAACTGCATAAACAAATGTATGGAAATAAGCaaataaccatgacttaaataagatggaagtttgtttctctctgatatgataggaggccagaacaaggggtccaggttattgtacagattcaagatgtcaggcattttgaatgttgttgctccactattttagtatgtgactttctactcatggttcaatatggtggcatggtctccagccctcacatctccattgcagctagcagcaaaaggagagggaatagttcacattcacttttttacaaaattaaagagatttttatggtcttaatacattcctacttacttctcatgagctcaaagttcatcatacagtcacacagagctgcaagggagtctaggaaaaacagtctCAAAAAGTAGAGGTGGACAGCTTCTCAGGGATCTCCCAAGTTCTGATGACTCTCTCAACTCTCTGCTTCTCTCTGGGTTCCAGACTAGATTCTCTCAGAAAAAGTCTTGGAATATAGGATGGAAAAAAAAAATCCAGCTGCTGCAGCTATAGATTCACAGTCTGAGCTTCTCCCACCACCCTCTCAGTCTTTGCTGATCAAATTCAGGGGAA-GGTTAACTAGCCTGTTTTGAACCATATGTCTATCTCTGGGATAATCTCTGCACCTGAGAAAGGCTGGCTTCTCAGAGCAGAT s rheMac2.chr3 158241657 794 - 196418989 atagagagagggatagaaagataggatagatgatgggtcga----tagatggatagatagataagatgatagatagatagatagatagatagatagatagatagatagatggaAAAAATATCATGCAACTGCATAAACAAACGTATGAaaa-aaacaaatattaatgactgaaataagatggaagtttgtttctctgtgctacgataggaggccagaacaagtggtcctggtggttgtacagattcaagatgtcaggcatcctccatattgttgctccacaattttaatatgtgactttctactcatggttcaatatggtgatgtggtctccagccctcacatctccattgcagctagtagtaaaaggagaaggaagagttcacattcacttttttaagaaattaaagagatttttatggtcttaatacattcctacttacttttcatgagctcaaagttcatcatacagtcacacagagctgcaagggagtctaggaaaaacaatctCAAAAAGTAGAGGTGGACAGCTTCTCAGGGATCCCCCAAGTTCTGGTCACTCTCTCAACTCTCTG-TTCTCTCTGTGTTCCAGGCTAGATTCTCTTGAAAAAAGACTTGGAACATAGGATGG-AAAAAAAAGTCCAGCTGCTGCAGCTATAGATTCCCAGTCTGAGCTTCTCCCACC--CCCTTCAGTCTTTGCTGATCAAATTCAAGGGAAGGGTTAACTAGGCTGTCTTGCACCCTGTGTCTATCTCTGGGATAATCTCCGCACCTGAGAAAGGCAGGATTCTCAGAGAAGAT i rheMac2.chr3 I 252 M 942 s panTro2.chrX 758180 788 + 155361357 atagatagatagatagatagataggatagatgatgggtagatggatagatggatagatagacaggatagatgatagatagataa-------------tagatagatagatggaATAAATATCATATAACTGCATAAATAAATGTATGGAAATAAGCaaataatcatgacttcaataagatggaagtttgcttctctctgatatgataggaggccagaacaaggggtccaagttgttgtacagattcaagatgtgagacatcctccatgttgtgcctccaccattttagtatgtgactttctactcatggttcaatatggtgacatggtctccagccctcacatctccattgcagctagcagcaaaaggagagggaagagttcacattcacttttttaagaagttaaggagatttttacggtcttaatacattcctacttacttcccatgagctcaaagttcatcatacagtcacacagagctgcaagggagtctaggaaaaacagtctGAAAAAGTAGAGGTGGACAGCTTCTCAGGGATCCCCCAAGTTCTGGTCACTCTCTCAACTCTCTGCTTCTCTCTGTGTTCCAGACTAGATTCTCTTGGAAAAAGTCTTGGAAGATAGGATGG-AAAAAAAAATCCAGCTGCTGAGGCTATAGATTTAGAGTCTGAGCTTCTCCCACC-TTCTCTCAGTCTTTGCTGATCAAATTCAAGGGAAGGGTTAATTAGCCTGTCTTGCACCATATGTCTATCTCTGGGATAATCTCTGCACCTGAGAAAGGCTGGCTTCTCAGAACAGAT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 5226 763 + 32581 atagagagagggatagaaagataggatagangatggn--------tagatggttagttagataggatagatg----------------------------atagatagatggaATAAATATAGTATAACTGCATAAACAAATGTATGGAAATAAGCaaataatcatgacttaaataagatggaagtttgtttctctctgatatgataggaggccagaacaaggggtccaggtgattgtacagattcaagatgtcaggcattttgaatgttgttgctccactattttagtatgtgactttgtactcatggttcaatgtggtggcatggtctccagccttcacatctccattgcagctagcagcaaaaggagagggaagagttcacattcacttttttacaaaattaaagagatttttatggtcttagtacattcctacttacttctcatgagctcaaagttcatcatacagtcacacagagctgcaagggagtctagg-aaaacagtctCAAAAAGTAGAGGTGGACAGCTTCTCAGGGATCTCCCAAGTTCTGATGACTCTCTCAACTCTCTGCTTCTCTCTGGGTTCCAGACTAGATTCTCTGAGAAAAAGTCTTGGAATATAGGATGG--AAAAAAAATCCAGCTGCTGCAGCTATTGATTCACAGTCTGAGCTTCTCCCACCTCCCTCTCAGTCTTTGCTGATCAAATTCAGGGGAA-GGTCAACTAGCCTGTCTTGAACCATATGTCTATCTCTGGGATAATCTCTGTACCTGACAAAGGCTGGCTTCTCAGAGCAGAT i gorGor1.Supercontig_0000485 C 0 C 0 a score=129212.000000 s hg19.chrUn_gl000239 4091 485 + 33824 GATT---TTGTTGTTGTTGTTGTTAAACTTTAAAAGATGAATCAGATGTTACAATGACTCAGGGCTGGGCAGGCAAACTCAGGGAACTAGGAAATTGATGATGGAGTCAGAGATTGAGGTGCTGGGTGTGATGTGATGAAGTACAGACAGAGAGGCCACATCTTTCCATGTGTGAATTTATGAAAGATTTCAGACACTTAGGTAAGGATCCTGAACTATTCTCTGCAGTTGATGAGAAACCACCAACATTTTGTGACCAGTCATGTCAACATTTATGCTTATACATATTAAATAGGTCTAAATGTGTTTAGACCTATTACCTTGGAACCCATGCATAGGATGGATGAGAAGGGATGGCACTGAAGATGGAAGCCTGGAGACTCTGGCATGGGATGGATGGTGGTAATGGAGTCTTTGAACCTGGAGCATGGAGTGGGAAGGAAGAAGTGAGAAGGCATTCAAAGTCACCAGTGAggctgggcaccatg s gorGor1.Supercontig_0000485 5989 481 + 32581 GATT------TTGTTGTTGTTGTTAAACTTTAAAAGATGAATCAGATGTTACAATGACTCAGGGCTGGGCAGGCAAAGTCAGGGAACTAGGAAATTGACGACGGAGTCAGAGATTGAGGTGCTGGGTGTGATGTGATGAAGTACAGACAGAGAGGCCACATCTTTCCATGTGTGAATTTATGAAAGATCTCAGACACTTAGGTAAGGATCCTGAACTATTCTCTGCAGTTGATGAGAAACCACCAACATTTTGTGACCAGTCACGTCAACATTTATGCTTATACATATTAAATAGGTCTAAGTGTGTTTAGACCTATT-CCTTGGAACCCATGCATAGGATGGATGAGAAGGGATGGCACTGAAGATGGAAGCCTGGAGACTCTGGCATGGGATGGATGGTGGTAATGGAGTCTTTGAACCTGGAGCATGGAGTGGGAAGGAAGAAGTGAGAAGGCATTCAAAGTCACCAGCGAggctgggcaccatg i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 758968 488 + 155361357 GATTttgttgttgttgttgttgttAAACTTTAAAAGATGAATCAGATGTTACAATGACTCAGGGCTGGGCAGGCAAAGTCAGGGAACTAGGAAATTGACGATGGAGGCAGAGATTGAGGTGTTGGGTGTGAGGTGATGAAGTACAGACAGAGAGGCCACATCTTTCCATGTGTGAATTTATGAAAGATCTCAGACACTTAGGTAAGGATCCTGAACTGTTCTCTGCAGTTGATGAGAAACCACCAACATTGTGTGACCAGTCATGTCCACATTTATGCTTATACATATTAAATAGGTCTAAATGTGTTTAGACCTATTACCTTGGAACCCATGCATAGGATGGATCAGAAGGGATGGCACTGAAGGTGGAAGCCTGGAGCCTCTGGCATGGGATGGATGGTGGTAATGGAATCTTTGAACCTGGAGCATGGAGTGGGAAGGAAGAAGTGAGAAGGCATTCAAAGTCACCAGTAAggctgggcaccatg i panTro2.chrX C 0 C 0 e rheMac2.chr3 158242451 942 - 196418989 M a score=103675.000000 s hg19.chrUn_gl000239 4576 218 + 33824 gctcacacctgtaatcccagcactttgagaggtcaagacaggcagatcacttgagctccggagttcaagaccagcctgggcaacatgatgagacccccatctctattaaaaatagaaaaaatagccaggagtggtggtgtgtgcctgtagtcctagctactaggggagctgaggtgggaggatcacttaagcccaggaggtggaggttgcagtgagct s panTro2.chrX 759456 216 + 155361357 gctcacacctgtaatcccagcagtttgagagggcaagacaggcagatcacttgagctcaggagttcaagaccagcctgggcaacatggcgaga-ccccacctctattaaaaata-aaaaaatagacaagagtggtggtgtgtgcctgtggtcctagctactagggaagctgaggtgggaggatcacttaagcccaagtggtggaggttgcattgagct i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 6470 202 + 32581 gctcacacctgtaatcccagcactttgagaggtcaagtcaggcagatcacttgagctccggagttcaagaccagcctgggcaacatgatgagacccccatctctattaaaaatagaaaaaatagccaggagtggtggtgtgtgtctgtagtcctagctactaggggagctgaggtgggaggatcacttaagcccaggaggtG---------------- i gorGor1.Supercontig_0000485 C 0 M 462 s ponAbe2.chr21 13260000 216 + 48394510 gctcacacctgtaatcccagcactttgagaggccaagacaagcagatcacttgagctcaggagttcaagaccagcctgggcaacatggtgaga-ccccacctctattaaaaata-aaaaaatagacaggagtagtggtgtgtgcctgtggtcctagctactagggaagctgaggtgggaggatcacttaagcccaggtggtgaaggttgcagtgagct i ponAbe2.chr21 N 0 C 0 e rheMac2.chr3 158242451 942 - 196418989 M a score=42760.000000 s hg19.chrUn_gl000239 4794 88 + 33824 gagattgtgccactgcactccagcccaggtgacagagtgagacattgtctcaaacaaacaaacaaaTTAaaataacacaaacacacac s panTro2.chrX 759672 86 + 155361357 gagattgtgccactgcactccagcccaggtgacagagcgagacattgtctcaaacaaacaaacaaaTTAAAATAACAC--ACACACAC i panTro2.chrX C 0 C 0 s ponAbe2.chr21 13260216 88 + 48394510 gagattgtgccactgcactccagcccaggtgacagagcgaggcattgtctcaaagaaacaaacaaattaaaataacacacacacacac i ponAbe2.chr21 C 0 I 13 s rheMac2.chr3 158243402 84 - 196418989 gagattgtgccactgcactccagcccaggtgacagagcaagacgttgtctc----aaacaaacaaGTTAAAATAACACACACACACAC i rheMac2.chr3 M 942 C 0 e gorGor1.Supercontig_0000485 6672 462 + 32581 M a score=2038592.000000 s hg19.chrUn_gl000239 4882 2616 + 33824 acaaaaacaaaaaaacaaaaatacaaaaaca--aacaaaaaacaGTCACCACAGAAGCAAACTGTTGTGTCTCTTTGATGTTGAGGGAAAAATCAAACGTGACTTCAGAGCTCTAACCTGAAAGGTTGAGTGGGAAACAAACTCCCAATAAAAG-AACATAAATTATGTCTGGGGGAGAAAAGAAGACAAAGTTGAGTTCAGCCTTTGCTTTATTGATTCTTCTTCTGAAGGAGGTTCTTCTAAAACAGGGAGTCACATTTAGcctttgctcgttcttctcctcttcccaaaggggttcttctaaatgttgggctgaactagggctcaaacataagcttccttctctctccaggggatctcactcagccccaagacttgacacatccactcaaaatcctaaattcccatctctggctttgacatcttttctctacttcagattcatgcatgtaactgtatcctcaacttctcagctcagataaatgattagggcttccaagttaacccatcccaaaccatctggaaagccttcactggattcaccaccacccctgagaagtgttttggcagaagactttggaaactttgaactcttctttctctcatctcccccttatacaattcattggcaagtctcttgaatgacctcaaatatttgtcaaattggatcagattttcctgcctttgctttcttcaccctcatgcatgacatatgtcatctggatcatagccacatcctcttgattgatctcttggcttctgtcctggtttctgctttgatcctggaattattcttaagcagagaaatctttcaaaaataGAGATGATTTTTAGCTTGTGGTCCTCATCCCTTGCTAATGACTAAATAGCAAAGTTTcccaaaatttgtatgttgaaggcctaacccctactaGTCAtgtccctccaaaatgcaccatatggaaaccctaatccccaatgggatgatattaggaggtgaagtctctggaggtgatgaggtttagatgaggtcatgaggatgggtccttcatgacgggattagtatccttataagaagagcgagagacacaaaagtgc----tctctctctctctctttctctctctgaacgcaccatctgtgaaccagcaagaggacccactccagacaataaatctgccataccttgatctcggacttccccatctccagaactgtgagaaatcaatggctgttacttaagccacccagtctataa-tttttgttatggcaacccgagctgaataagacaTCCCTCATTGCCACTCAAAACCCGCCAATAATTTCACATCGAAGTCAGAATACAATCTAACTACTTCCCTATGGCTTCTTTGTAACTCTGTCCCTGGTCACTTGCTCCAACTGGGACTCTGTGGTCCCAATAAAATAACGTAAATTATGTCT-GGGGAAGAAAAGAAGACAAAGTTGAGTTCAGCTTT-GCTTTACTGATTCTTCTTCTGAAGGGGGTTCTTCTAAAACAAGGAGTCATCACGTTTAGCCTTTGCTTGTTCTTCTTTGCTGCCCCCTTGGGCATCCCCCCAGTCATGCCAAATTCATTCCTGCTGCAGACCTCCAGTACATTACTCCTTCTGTGagtgtcctctggccgccatcaccaatgatcacattcgtattggcttaaagcaacacaaatgtattgtcttaca-gtgttgtagttttgaagcccaccctgggtctcactggcctaaaaccaaggtgtcagcaaaacttccctcttgatgcaagttct-gggggagaatcagtttccttgccatttcctgcttctaggggaatgtttctagagtatttcttggctcctggacccttccttgaacttcagagccagtagtgcagcatcttctaatttctctgtgactctgacctttgcttttgtcctaacatcacctcctctggctctggcactcctgcctccctcttacaaagatcctgtgatgatcttagacccagctggataatccagggtcatttcatctcatgattcttaaactaatcacatctgcaaaatctttttagccatgacaggtttttacagatttctagaattaggatgtgga--tttttttttgaggggggGAAGGGGGTGCTTACTCTGTCAACCACATggggattaggatgtagacatccttggggccattatcctgtctgctacCTAGTattaggacatggacatctttgggaccattattctctgtatcacaTgaggattaggacatgggtatctttgggaccattattctgtctcccacaTggggattaggatgtggacatctttggggccattattctgtctgccaTGTggggataaggatgtgtacatc-tttgaggccattattctgtctaccacaTggggattagtatgtggacatctttggggtcattattctgtctaccacaTggggattaggacgtggacatctttggggcc----attattctgtctgccacGTggggattaggatgtgtacatctttggggccattattctgtctatcacaTggggattaggacgtggacatctttggggccattattctgtctgccacaTggggattaggatgtgtacatctttggggccattattctgtctg s panTro2.chrX 759758 2587 + 155361357 AAAGAAACAAACAAACAAAAAT------------------AACAGTCACCACAGAAGCAAACTGTTGTGTCTCTTTGATGTTGAGGGAAGAATCAAACGTGACTTCAGGGCTCTAACCTGAAAAGTTGAGTGGGAAACAAACTCCCAATAAAAG-AACATAAATTATGTCTGGGGGAGAAAAGAAGACAAAGTTGAGTTCAGCCTTTGCTTTATTGATTCTTCTTCTGAAGGGGGTTCTTCTAAAACAAGGAGTCACATTTAGcctttgctagttcttctcctcttcccaaaggggttcttctaaatgttgggctgaactagggctcaaacataagcttccttctctctctgggggatctcactcagctccaagacttgacacatccactcaaaatcctaaattcctatctctggatttgacatcttttctctatttcagattca-gcatgtaactgtatcctcaacttctcagctcaggaaaatgattagggttttcaagttaacccatcccaaaccatctggacagccttcactggattcaccaccacccctgacaagtgttttggcagaagattttggaaactttgaactctcctttctctcatctcccccttatacaattcattggcaagtctcttgaatgacctcaaacatttgtcagaatggatcagattttcctgcctttgctttcttcgccctgatgcatgacgtatgtcatctggatcatggccacatcctcttgattgatcttttggcttctgtcctggtttctgctttgatcctggaattattcttaagcagagaaatctttttaaaaTGGAGATGATTTTTAGCTTGTGGCCCTCATCCCTtgctattgactaaatagc--agtttcccaaaatttgtatgttgaaggcctaacccctaCtggttatgtccctccaaaatgcaccatactgaagccctaatccccaatgggatgatattaggaggtgaagtctctggaggtgatgaggtttagatgaggtcatgaggatgggaccttcatgatgggattagtatccttataagaagagcaagagacacaaaa--gc----tctctctctatctctttctctctctgaaggcaccatctgtgaaccagcaagagaaccccctccatacaataaatctgccatgcctcgaactcggaatttcccatctccagaactatgagaaatcaatggctgttacttaagccacccagtctatga-tttttgttatggcaacccaagctgactaagacaTCCCTCA-TGCCACTCAAAACCCTCCAATAATTTCACATCAAAGTCGGAATACAATCTGACTACTTCCCTATGGCTTCTTTGTAACTCTGTCCCTGGCAACTTGCTCCAACTGGGACTCTGTGGTCCCAATAAAAGAATGTAAATTATGTCT-GGGGGAGAAAATAAAACAAAGTTGAGTTCAGCCTTGGCTTTATTGATTCTTCTTCTGAAGGGGGTTCTTCTAAAACGAG------TCACATTTAGCCTTTGCTGGTTCTTCTTTGCTACCTCCTTGGGCGTCCCCCCAGTCATGCCAAATTCATTCCTGTTGCAGACCTCCAGCACATTACTCCCTCTGTGagtgtcctgtggccgccatcaccaatgatcatgttcgtattggcttaaagcaacacaaatgtattgtcttaca-gtgttgtaggtttgaagcccactctaggtctcactggcctaaaaccaaggtgtcagtaaaacttccctcttgatgcaagttct-gggggagaatcagtttctttgccatttcctacttctagaggaatgtttctagaatattccttggctcctggacccttcctccatcttcaaagccagtactgcagcatcttctaatctttctgtgactctgacctttgcttttgtcctaacaacacctcctctggctctggcactcctgcctgcctcttacaaagatcctgtgatgatcttagacccacctagataatccagggtcacttcatctcatgattcttaaactaatcacatctgcaaaatctttttagccatgacaggtttttacagatttctggaattaggatgtggatgttttttttttagggggggcagggggcacttactctgtcaaccacaTggggattaggatgtagacatccttggggccattattctgtctactacCTAGTattaggacatggacgtctttgggaccattattctctgtaccacaTgaggattaggacataggcatctttgggaccattattctgtctaccacaTggggattaggacgtggacatctttggggtcattattctgtctgctgcaTGAGAATTAGGACACAGACGTTGTTTGGGGCCATTAT----TCTACCACATGAGGATGAGGATGTGGATATCTTTCATACTATCATGCTGTCTACTACATgaagataaggatgtgggcatctttgggacc----attattctgtctaccacaTgaggattaggaagtggatgtcttggaatccattattcggcctaccccaT-gggattagaatgtggacatctttagggccattatactgtctacctcacggggattaggatgtggacatctttagggccattattctgtcta i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 7134 2602 + 32581 AAATACAAAAACAAACAAAAA-------------------AACAGTCACCACAGAAGCAAACTGTTGTGTCTCTTTGATGTTGAGGGAAAAATCAAACGTGACTTCAGAGCTCTAACCTGAAAGGTTGAGTGGGAAAAAAACTCCCAATAAAAG-AACATAAATTATGTCTGGGGGAGAAAAGAAGACAAAGTTGAGTTCAGCATTTGCTTTATTGATTCTTCTTCTGAAGGAGGTTCTTCTAAAACAGGGAGTCACATTTAGcctttgctcgttcttctcctcttcccaaaggggttcttctaaatgttgggctgaactagggctcaaacataagcttccttctctctccagggnatctcactcagccccaggacttgacacatccactcaaaatcctaaattcccatctctggctttgacatcttttctctacttcagattcatgcatgtaantgtatcctcaacttctcagctcagataaatgattagggcttccaagttaacccatcccaaaccatctggaaagccttcactggattcaccaccacccctgagaagtgttttggcagaagactttggaaactttgaactctnctttctctcatctcccccttatacaattcattggcaagtctcttgaatgacctcaaacatttgtcaaattggatcagattttcctgcctttgctttcttcaccctcatgcatgacatatgtcatctgnatcanagccacatcctcttgattgatctcttggcttctgncctggtttctgctttgatcttggaattattcttaagcagagaaatcttttaaaaataGAGATGATTTTTAGCTTGTGGCCCTCATCCCTTGCTAATGACTAANTAGCAAAGTTTcccaaaatttgtatgttgaaggcctaacccctactaGTCAtgtccctccaaaatgcaccntattgaaaccctaanccccaatgggatgatattaggaggtgaagtctctggaggtgatgaggtttagatgaggttatgaggatgggtccttcatgacnggattagtatccttataagaagagcnagagacacnaaagtgctctntctctctctctctctttctctctctgaaggcaccatctgtgaaccagcaagaggacccactccaganaataaatctgccataccttgatctcggacttccccntctccagaactgtgagaaatcaatggctgttacttaagcnacccagtctataa-tttttgttatngcaaccngagctgactaagacaTGCCTCA-TGCCACTCAAAACCCTCCAATNATTTCACATCAAAGTCAGAATACAATCTGACTACTTCCCTATGGCTTCTTTGTAACTCTGTCCCTGGTCACTTGCTCCAACTGGGACTCTGTGGTCCCAATAAAATAACGTAAATTATGTCT-GGGGAAGAAAAGAAGACAAAGTTGAGTTCAGCCTTTGCTTTACTGATTCTTCTTCTGAAGGGAGTTCTTNTAAAACAAGNAGTNGTCACGTTTAGCCTTTGCTTGTTCTTCTTNGCTNCCCCCTTGGGCATCCCCCAAGTCATGCCAAATTCATTCCTGCTGCAGACCTCNAGTACATTACTCCTTCTGTGagtgtcctctggccgccatcaccaatgatcacattcgtattggcttaaagcaacacaaatgtattgtcttaca-gtgttgtagttttgaagcccancctgggtctcactggcctaaaaccaaggtgtcagnaaaacttccctcttgatgcaagttct-gggggagaatcagtttccttgccattt-ctgcttctaggggaatgtttctagagtattccttggctcctggacccttccttgaccttcaaagccagtagtgcngcatcttctaatttctctgtgactctgacctttgcttttgtcctaacatcacctcctctggatctggcactcctgcctccctcttanaaagatcctgtgatgatcttagacccanctggntaatccagggtcatttcatctcatgattcttaaactaatcacatctgcaaaatctttttagccangacaggttttnacagatttctggaatttggatgtggat-ttttttTTTGANTGGGGGAAGGGGGTGCTTACTCTGTCAACCACNTggggattaggatgtagacatccttggggccattattctgtctgctacCTAGTattaggacatggacatctttgngaccattattctctgtatcacaTgaggattaggacatgggtatctttgggaccattattctgtctcccacaTggggattaggatgtggacatctttggggccattattctgtctgccacGTggggataaggatgtgtacatc--ttggggccattattctgtctaccacaTggggattagtatgtggacntctttggggtcattattctgtctaccacaTggggattaggacgtggacatctttggggcc----attgttctgtctgccacGTggggattaggatgtgtacatctttggggccattattctgtctatcacaTggggattaggacgtggacatctttggggccattattctgtctgccacGTggggattaggatgtgtacatctttggggccattattctgtcta i gorGor1.Supercontig_0000485 M 462 I 49 s ponAbe2.chr21 13260317 2580 + 48394510 aaatacaaaaacaaacaaaaa----acaacaacaacaaaaaacaGTCACCACAGAAGCAAACTGTTGTGTCTCTTTGATGTTGAGGGAAGAATCAAACGTGACTTCAGAGCTCTAACCTGAAAAGTTGAGTGGGAAACAAACTCCCAATAAAAG-AACATAAACTATGTCTGGGGGAGAAAAGAAGACAAAGTTGAGTTCAGCCTTTGCTTTATTGATTCTTCTTCTGAAGGGGGTTCTTCTAAAACAAAGAGTCACGTTTAGcctttgctggttcttctcctcttcccaaaggggttcttctaaatgttgggctgaactagggctcaaacataagcttccttctctctccgggggatctcacgcagctccaagacttgacacatccactcaaaatcctaaattcctatctctggatttaacatcttttctctacttcagattcatacatgtaactgtatcctcaacttctcagctcaggaaaatgattagggttttcaagttaacccatcccaaaccatctggacaggcttcactggattcaccaccatccctgagaagtgttttggcagaagattttggaaactttgaactcttctttctctcatctcccccttatacaattcattggcaagtctcttgaatgacctcaaacatttgtcaaaatggatcagattttcctgcctttgctttcttcaccctgatgcatgatgtatgtcatctggatcatggccacatccttttgattgatctcttggcttctgtcctggtttctgctttgatcctggaattattcttaagcagagaaatcttttaaaaaTGGGGATGATTTTTAGCTTGTGGCCCTCATCCCTtgctattgactaaatagcaaagtttcccaaaatttgtatgttgaaggcctaacccctactggtcatgtccctccaaaatgcaccatactgaagccctaatccccaatgggatgatattaggaggtgaagtctctggaggtgatgaggtttagatgaggtcatgaggatgggaccttcatgatggaattagtatccttataa-aagagcaagagacacaaaa--------gctctctctctctctttctctctctgaaggcaccatctgtgaaccagcaagagaaccccctccagacaataaacctgccatgcctcgatcttgaactttcccgtctccagaactgtgagaaatcaatggctgttacttaagccacccagtctatga-tttttgttatggcaacctgagctgactaagacaTCCCTCA-TGCCACTCAAAACCCTCCAATAATTTCACATCAAAGTCAGAATACAATCTGACTACTTCCCTATGGCTTCTTTGTAACTCTGTCCCTGGCCACTTGCTCCAAATGGGACTCTGCGGTCCCAATAAAAGAACGTAAATTATGTCTGGGGGGAGAAAAGAAAACAAAGTTGAGTTCAGCCTTGGCTTTATTGATTCTTCTTCTGTAGGGGGTTCTTCTAAAACAAGGAG---TTACATTTAGCCTTTGCTGGTTCTTCTTTGCTACCTCCTTGGGCGTTCCCCCAGTCATGCCAAATTCATTCCTGCTGCAGACCTCCAGCACATTACTCCTTCTGTGagtgtcctgtggccgccatcaccaatgatcatgtttgtattggcttaaagcaacacaaatgtattgtcttacaggtgttgtaggtttgaagcccactctgggtctcactggcctaaaaccaaagtgtcagcaaaacttccctcttgatgcaagttct-gggaaagaatcagtttctttgccatttcctgcttctagaggaatgtttctagactattccttggctcctggacccttccttgagcttcaaagccagtattgcagcatcttctaatctttctgtgactctgacctttgcttttgtcctaacatcacctcctctggctctggcattcctgcctgcctcttacaaagatcctgtgatgatcttagacccacctggataatccagggtcatatcatctcacgattcttaaactaatcacatctgcaaaatcttcttagccatgacaggtttttacagatttctggaattaagatgtgga--tttttttTTGAGATGGGGCAGGGGGTGCTTACTTTGTCAACCACATggggattaggatgtagatatccttggggccattaatctgtctactacCTAGTattaggacatggatgtctttgggaccattattctctgtaccacaTgaggattaggacatgggcaactttgggaccattattctgtctgccacaT-gggattaggatgtgaagatctttgggaacattattctttttaccacaTG-GGATTAGAAAGTGCACATT-GTTGGGGCTATTACTGTGTCTACCAAAcagggattacagaatggacatcttcagggacatgattctgtctaccacaTGAGAACGATGACATAGACATCTTTGAAGCCATTAATTACTTTGTCTACCACATAAGGATGAGGACGTGGATATCTTTGGCACTATCATGCTGTCGACTACAcgaagataaggatgtgggcatctttagggccattatgctgtctaccacaTGGGGATTAGGATG------------------------------ i ponAbe2.chr21 I 13 C 0 s rheMac2.chr3 158243486 2582 - 196418989 ------ACAAACAAACAAAAA-------------------AATAGTCACTGCAGAAGCAAACTGTTATGTCTCTTTGATGTTGAGGGAAGTATCAAATGTGACTTCAGAGCTCTAACCTGAAAGGCTGAGCAAGAAACAAACGCCCAATAAAAGAAATGTAAATTATATCTGGGGCAGAAAAGAAGACAAAGTAGAGTTCAGCCTTTGCTTTATTGCTTCTTCTTCTGAAGGGGGTTCTTCTAAAACAAGGAGTCATGTTTAGGctttgctggttcttctcctcttcccaaaggggttcttctaaatgttgggctgaactagggcacaaacacaagcttccttctctctctgggggacctcactcagctccaggacttgacacatcccctcaaaatcctaaattcccatctccggcttcgacatcttttctctacttcagattcatgcatgtaactgtatcctcaacttttcagctcagataaatggtgagggtttcaaagttaatccatcccaaaccatctggacagtcttcactggattcaccaccacccctgagaagtgttttggcagaagattttggaaactttgaactcttgtttctctcatatcccccttatacaattcattggcaagtctcttgaatgacctcaaacattagtcaaatcggatcggattttcctgcctgtcctttcttcgccctgacgcatgacatatgtcttctggatcatggccacatcctcttcgttgatctcttggcttccgtcctggtttctgctttgaccctggagttatccttaagcagagaaatattttaaaaataGAGATGATTTTTAGCTCGTGGTCCTCATCCCTTGCTATTGACTAAATAACAAAGTTTTGCAATATTTGTGTGTTGATGACCTAATCCCTACtggtcatgtccctccaaaatgcaccatattgaagccctaatctccaacgggatgatattaggaggtgaagtctctggaggtgatgaggtttagatgaggtcatgaggatgggaccttcatgatgggattagtatccttaagagaagtgcaagagacacaaaa--gctctctctctctctctctctctttctctccgaaggcaccatctatgaacaagcaagaggacccccaccagacaataaatctgctatgccttgatctcggacttctctgtctccagaactgggagaaatcaatggctgttacttaagccaccccgtctatgattttttgttatggcaacc-gagctgactaagacaTCCCTCA-TGCCACTCAAAACCCTCCAATGATGTCACATCAAAGTCAGAATACAATCTGACCACTTCCCTATGGCTTCTTTGTAACTCTGTCCCTAGCCACTTGCTCCAACTGGGACTCTGCAGTTCCAATAAAAGAACGTAAATTATGTCT-GGCAGAGAAAAGAAGACAAAGTTGAGTTCGGCCTTTCCTGTATTGATTCTTCTTCTGAAGGGGGTTCTTCTAAAACAAGGAG---TCACATTTAGCCTTTGCTGATTCTTCTTTGCTGCCTCCTTTGGCGTCTCCCCAGTCAAGCCAAATTCATTCCTGCTACAGACCTCCAGCACATTACTCCTTCTCTGagtgtcctgtggccaccgtcaccaatgatcacattcatattggcttaaagtgacacaaatgtattgtcttaca-gtgttgtaggttcgaagcccaccctgggtctcagtgacctaaaaccaaggtgtcagcaaagcttctctcctgatacaagttctagggggagaatcagtttccttgccaattcctgcttctagaggaatgtttctagagtattccttggctgctggacccttcctcgaccttcaaagccaataatgcagcatcttctaatctttctgtgactctgacctttgctttcatcctaacatcacctcctctggctctggctcccctgcctccctcttacaaagaccctaagatgaccttagacccacttggataatccagcgtcatttcatctcatgattcttaaactggtcacatctgcaaaatctttttagccatgacagatttttacagacttctggaacgaggacgtgga--cgttttt---gggggCGGCAGGGGGTGCTTACTCTTTCAAccacatggggattgggatgtagacatccttggggccattatactgtctactacctaggattagaacatggacatccttggggccattattctgtctactacct-aggattagaacatggacatccttggggccattattctgtctcccacat-gggattaggacgtgagcatctttggggccattattctgtctcccacatg-ggattaggacatggacatc-tttggggccattattctgtctcccacat-gggattaggacatggacatctttggggccattattctgtgtatcacatg-ggattaggatgtgagcatttttggggcc----attattctgtctcccacatg-ggattaggacgtgagcatctt-ggggccattgttttgtctaccacat-gggattaggatgtggacatctttggggccattattctgtctcccacat-gagattaggacgtggacatctttgaggccattattctgtcta i rheMac2.chr3 C 0 C 0 a score=34205.000000 s hg19.chrUn_gl000239 7498 164 + 33824 ccacaT-gggattaggacatggacatatttgaggcca------------------------------------------------ttattctgtctaccaAATggagattaggatgtggacatctttggggccattattctgtctcccacaTgaggattaggatgtggacatctttgaggccattattctgtctctcacaTGGGATTAGGATG s rheMac2.chr3 158246068 163 - 196418989 ccacttgggaattatgatgtggacatctttgaggcca------------------------------------------------ctattccgtctgccacatgg-gattaggatgtggacatctttggggctattattttgtctcccacatg-ggattagaatgtggacatctttgaggccattattctgtctcccacatgggattaggacg i rheMac2.chr3 C 0 C 0 s gorGor1.Supercontig_0000485 9785 213 + 32581 ccacaTggggattaggacgtggacatcnttgaggccattattctgtctgccacTTgggattaggacatggacanatttgaggccnttattctgtctaccaAATggagattaggatgtggacatctttgggnccantattctgtctcccacaTgaggattaggatgtggacatctttnaggccattattctgtctcccacaTGGGATTAGGATG i gorGor1.Supercontig_0000485 I 49 C 0 e ponAbe2.chr21 13262897 0 + 48394510 C e panTro2.chrX 762345 0 + 155361357 C a score=12366.000000 s hg19.chrUn_gl000239 7662 145 + 33824 TGAAGATCTTTGGGAACATTATTGTTTTCACCACATgggattaggacatggacatctttggggccattattctgtctaccacaCgggattaggatgtggacatctttgggaccactattctgtctacctcaTggggattaggata s gorGor1.Supercontig_0000485 9998 145 + 32581 TGAAGATNTTTGGGAACATTATTGTTTTCACCACANgggattaggacatggacatctttgnggccattattctgtctaccacaCggnnttaggatgtggacatctttgggaccactattctntctaccacaTggggattaggata i gorGor1.Supercontig_0000485 C 0 C 0 e ponAbe2.chr21 13262897 0 + 48394510 C e rheMac2.chr3 158246231 0 - 196418989 C e panTro2.chrX 762345 0 + 155361357 C a score=16444.000000 s hg19.chrUn_gl000239 7807 82 + 33824 tggacatctctgggaccattattctgtctaccacaTGGGAAATAGGATGTTGGTCACATCTTTAGGATCATTATTCTGTCTC s gorGor1.Supercontig_0000485 10143 82 + 32581 nggacatctctgggnccattattctgtctaccacaTGGGAAATAGGATGTTGGTCACATCTTTAGGATCATTATTTTGTCTC i gorGor1.Supercontig_0000485 C 0 C 0 s rheMac2.chr3 158246231 79 - 196418989 tggacatctttgaggccattattctgtctaccacttgggaattatgatgtgg---acatctttgaggccactattccgtctg i rheMac2.chr3 C 0 C 0 e ponAbe2.chr21 13262897 0 + 48394510 C e panTro2.chrX 762345 0 + 155361357 C a score=49065.000000 s hg19.chrUn_gl000239 7889 111 + 33824 CCACATggggattaggatgtgg---acatctttggggccattattctgtctaccacaTggggattaggacatggacatctctggggacattattctgtctaccacaTggggaat s panTro2.chrX 762345 114 + 155361357 ccacaTggggaataggatgttggtaacatctttagggccattattctgtctcccacaTgaggattaggatgtggacatctctggggacattattctgtctaccacaTGGGGAAT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 10225 111 + 32581 CCACATggggattaggatgtgg---acatctttggggccattattctgtctaccacaTggggattaggacatggacatctctggggacattattctgtctaccacaTggggaat i gorGor1.Supercontig_0000485 C 0 I 251 s rheMac2.chr3 158246310 105 - 196418989 ccacat-gggattaggacgtgg---acatctttggggctattattttgtctcccacatg-ggattagaatgtggacatctttgggaccattattctgtctgccacatggg---- i rheMac2.chr3 C 0 I 12 e ponAbe2.chr21 13262897 0 + 48394510 C a score=364705.000000 s hg19.chrUn_gl000239 8000 474 + 33824 aggatattggtaacatctttagggccattattctgtctaccacaTggggattaagacatggatatctttggggccattattctgtctaccacGAGATAATTAGAACTTGGACATCGTTGGTGAAATCACTTTGTCTTTGTCCTTTCTTATTCTTAGAATTCT---AGTGACAAGC---------------GTCTTCTTCTTCCTCAACTTCTTCTTCCTCAGCGTTCCTATGGGGCCTCCAACACTCACCAGACAGCTCCCTGACTGCATTACCCTAGATTGTATTTGGCCAAGATTCTCGGGTTTTTCTTGGTTTCTCCAAGCAGGATGGAAGCTTTAGAGGGCAGAGTGTTTGTTACTCTTTCTTATTCTAATTGTGTATTCTTATTTATTGACGTGTCTCCAGCTTTCAAGGCAGATTCTCACCCATTAGGTCTTCTATATACAATTAAATTTACCTAGAAAGTATTTCCTTCTTATTTAAAACTTTTT s ponAbe2.chr21 13262897 469 + 48394510 ------TTGGTAACATCTTTAGGGTCATTATTC-ATCTCCCACATggggattaggacatggatatctttggggccattattctgtttcccacaTgg-gattaggacgtggacatctttggtgaaatcactttgtctcccTCGTTTCTTATTCTTAGAATTCTCCTAGTAACAAGC---------------TGCTTCTTCTTCCTCAACTTCTTCTTCCTCAGCATTCCTATGGGGCCTCCAACACTCACCAGGCAGCTCCCTGACTGCATTACCCAAGATTGTATTTGGCCAAGATTCGCTGCTTTCTCTTGGTACCTccaagcaggatggaagatttagagggcagagtctttgttactctttcttattctaattgTTTATTCTTATTTATTGACGTGTGTCCAGCTTTCAAGGCAGACTCTCACCCATTAGGTCTTCTATATACAATTAAATTTACCTAGAAAGTATTTCCTTCTTACTTAAAGCTTTTT i ponAbe2.chr21 C 0 C 0 s panTro2.chrX 762459 492 + 155361357 AGGATGTTTGTAACATTTTTAGGGCCATTATTCTGTCTCCCACATggggattaggacatggatatctttggggccgttattctgtctaccCCTAGATAATTAGAACTTGGACATCTTTGGTGAAATCACTTTGTCTTCCTCCTTCCTTATTCTTAGAATTCTCCTAGTAACAAGCTGcttcttcttcctcaacttcttcttcctcaacttcttcttcctcAGCATTCCTATGGGGCCTCCAACACTCACCAGGCAGCTCCCTGACTGCATTACCCGAGATTGTATTTGGCCAAGATTCTATGCTTTCTCTTGGTACCTCCAAGCAGGATGGAAGCTTTAGAGGGCAGTGTCTTTGTTACTCTTTCTTATTCTAATTGTTTATTCTTATTTATTGAGGTGTCTCCAGCTTTCAAGGCAGACTCCCACCCATTAGGTCTTCTACATACAATTAAATTTACGTAGAAAATATTTCCTTCTTATTTAAAGCTTTTT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 10587 477 + 32581 aggatattggtaacatctttagggccattattctgtctaccacaTggggattaggacatggatatctttggggccattattctgtctaccacGAGATAATTAGAACTTGGACATCTTTGGTGAAATCACTTTGTCTTCNTCCTTTCTTATTCTTAGAATTCTCCTAGTGACAAGC---------------GTCTNCTTCTTCCTCAACTTCTTCTTCCTCAGCGTTCCTATNGGGCCTCCAACACTCACCAGACAGCTCCCTGACTGCATTACCCTANATTGTATTTGGCCAAGATTNTCGGGTTTTTCTTGGTTTCTCNAAGCAGAATGGAAGCTTTAGAGGGCAGAGTGTTTGNTACTCTTTCTTATTCTAATTGTGTATTCTTATTTATTGACGTGTCTCCAGCTTTCAAGGCAGATTCTCACCCATTAGNTCTTCTATATACAATTAAATTTACCTAGAAAGTATTTCCTTCTTATTTAAAACTTTTT i gorGor1.Supercontig_0000485 I 251 C 0 s rheMac2.chr3 158246427 465 - 196418989 ------------acatctttggggccatcattctgtctaccatatggggattaggacatggatatctttggggctattattctgttcatcccaGGAGAATTAGAACTTGGGCATCTTTGGTGAAATCACTTTGTTGTCCTCCTTTCTTATTCTTAGAATTCTCCTAGTAACAAGC---------------TGCTGCTTCTTCTTCAGCTTCTTGTTCTTCAGCGTTCCCATGGGGCCTCCCACACTTACCAGGCAGCTCCCTGCCTGCATTACCTGAGATCATGTTTGGCCATGATTTTCTGCTTTTTCTCAGTTCCTCCAAGCAGGATAGAAGCTTTAGAGGGCAGAGTTCTTGTTACTTTTATTTATTCTAATTGTTTATTCTTATTTATTGACGTGTCTCCAGCTTTCAAGGCAGATTCTCACCCATTAGGTCTTCCATACACAATTAAATTTACCTAGAAAGTATTTCCTTCTTATTTAAAACTTTTT i rheMac2.chr3 I 12 C 0 a score=10899.000000 s hg19.chrUn_gl000239 8474 121 + 33824 AAAAGTAAATTcatgtatacatatgtaaccaacctgcatgtcgtgcacatgtaccctaaaacttaaagtataataataataaaaTTTTAAAAAAAGAAAGATAACAACCAAAAAACAACAA s gorGor1.Supercontig_0000485 11064 121 + 32581 AAAAGTAAATTcntgtatacatatgtaaccaacctgcatgtcgtgcacatgtaccctaaaacttaaagtataataataataaaaTTTTAAAAAANGAAAGATAACAACCAAAAAACAACAA i gorGor1.Supercontig_0000485 C 0 C 0 e ponAbe2.chr21 13263366 0 + 48394510 C e rheMac2.chr3 158246892 0 - 196418989 C e panTro2.chrX 762951 0 + 155361357 C a score=97889.000000 s hg19.chrUn_gl000239 8595 132 + 33824 AAAAGTAAATTCCAAAATTTCTATATCACATTACAAATTCACATGC-TACCATGAAGAATACATTTGCAAAATAAATGATGTCTTGAGACGAAATGAGTTTTCAATGAAGATTTTAGAGACTT--CAtttttatt s rheMac2.chr3 158246892 132 - 196418989 AAAAGTAAATTTCAAAATTGCTGTATCACGTTACAAATTCATATGCCACCCATGAAGAATACATTTGTAAAATAAATGATGTGTTGAGACGAAATGAATTTTCAATGAAGATTTTAGAGACTC--TCttttttt- i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 13263366 135 + 48394510 AAAAGTAAATTTCAAAATTGCTATATCACGTTACAAATTCACATGCCACCCGTGAACAGTACATTTGCAAAATAAATGATGTCTTCAGACAAAATGAATTTTCATTGAAAATTTTAGAGACtttttatttttatt i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 11185 135 + 32581 AAAAGTAAATTCCAAAATTTCTATATCACATTACAAATTCACNTGCCACCCATGAAGAATACATTTGCAAAATAAATGATGTCTTGAGACGAAATGAGNTTTCAATGAAGATTTTAGAGACTCtttatttttatt i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 762951 133 + 155361357 AAAAGTAAATTTCAAAATTGCTATATCACGTTACAAATTCACGTGCCTCCCGTGAAGAATACATTTGCAAAATAAATGATGTCTTGAGACTAAATGAATTTTCAATGAAGATTTTAGAGACTC--tttttttttt i panTro2.chrX C 0 C 0 a score=295671.000000 s hg19.chrUn_gl000239 8727 302 + 33824 tttat---tttttagacagagtctcactctgtcaccctggctgtagtgcagtggcacgatctcggctcaccacaacctctgcctcctgcgttcaagcaattctc-tgcctcagcctcccgagcagatgagattacaggaaccttccaccttgtccggctaatttttgta-tttttagtagacacagg-tttcaccttcttggccaggctggtcttgaactcctgacctcaggtaatccccccacctcggcctcccagagtgctaggattacagatgtgagccaccgtgcctggccGAGACT--TTTTAAT s panTro2.chrX 763084 309 + 155361357 tttttctttttttagacagagtctcactctgtcaccctggctgtagtgtagtggcgtgatctcggttcactgcaacctccgcctcctgtgttcaagcaattctcctgcctcagcctcccaagtagatggaattacaggcacctgccaccgtggctggctaatttttgta-tttttagtagagacaggatttcaccttcttggccaggctggccttgaactcctgacctcaggtaatccacccacttcggcctcccaaatggctgggattacagatgtgagccactgtgcctggccGAGACTCTTTTTAAT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 11320 302 + 32581 tttat---tttttagacagagtctcactctgtcaccctggctgtagtgcagtggnncgatctnggctcaccacaacctccgcctcccgggttcaagcanttctc-tgcctcagcctcccgagcagatgagattacaggaaccctccaccttgtcnggctaa-ttttgta-tttttagtanacacagg-tttcaccttcttggccaggctggtcttgacctcctgacctcaggtaatccacccacctcngcctnccacagtgctaggattacagatgtgagccaccgtgcctggccGAGACT-TTTTTAAT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13263501 304 + 48394510 ttta----tttttagacagagtctcactctgtcacctgggctggagtgcagtggcatgatctcagttcactgcaacctccgcctcccggattcaagcaattctc-tgcctcagcctcccgagtagatgggattacaggcacccaccaacttggccggctaatttttgta-tttttagtagagacaagttttaaccttcttggccaggctggtcttgaactcctgacctcaggtaatccacccacctcggcctcccaaagtgctgggattacagatgtgagccaccgtgcccagccGAGACTCTTTTTAAT i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158247024 300 - 196418989 --------ttttaagacagagtctcactctgttgcccaggctggagtgcagtggtgcgatctcgactcactgcaacctctgcctcccgggttcaagcaattctc-tgcctcagccttccgagtagatgggatgacaggcacctgccaacacggtaggctaatttttgta-tttttagtagagacagggtttcaccatcttggccaggatggtcttgaactcctgacctcaggtgatccacccatctcggcctctcaaagtgctggggttacagatgtgagccactatgccctgctGAGACTCTTTTTAAT i rheMac2.chr3 C 0 C 0 s micMur1.scaffold_40939 5271 303 - 5608 ttttt---ttttgagacagagtctcgctctgttgcccgggctgtagtgccatggcgtcagcctcgctcacagcaacctcaaactcctgggctcaaatgatccccctgcctcagcctcctgagtagctgggactacaggtgcacgccaccacacccggctaatttttctattttttagtagagacggg-ggtctcgcacttgctcaggctggcctcgaactcctgacctcgagcgatcctcccacctcggcctcccagagagctggaa-tacaggggtgagccgctgttcccgg--GTCATTTTTCTTAAT i micMur1.scaffold_40939 N 0 N 0 a score=227595.000000 s hg19.chrUn_gl000239 9029 274 + 33824 ACATGCTTTGGTTCTAATAAAGTTCCCCCTTGAGCTGTTTGGACAGATGACAGGGAAGAAATCATTTACAATTCTCTTAACAAAACCCCCGTAAATAATAACCCATTTCCCCCCAAA-TAGAAAAGGGAACTATTTCACCCTGCTCTTTGAGGAACTTGAATAAATAGTAAATGAAGTTCTGTCTATACAGGAAGGGTGGGTACTTGGCATTACATCTAGACAAGTAAAGACACAAGTGTTTTCTTCCAAATGAATGACATGTTTAAAAACCATC s panTro2.chrX 763393 275 + 155361357 ACATGCTTTGGTTCTAATAAAATTCCCCCTTGAGCTGTTTGGACAGATGACAGGGAAGAAATCATTTACAATTCTCTTAATAAAACCCCCATGAATAATAACCCATTTCCCCCCAAAATAGAAAAGGGAACTATTTCCCCCTGCTCTTTGAGGGAACTGAATAAATAGTAAATGAAGTTCTGTCTCTACAGGAAGCGTGGGTACTTGGCATTACATATAGAAAAGTAAAAAGATGAGTGTTTTCTTCCAAATGAATGACATGTTTAAAAACCATC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 11622 274 + 32581 ACATGCTTTGGTTCTAATAAAGTTCCCCCTTGAGCTGTTTGGACAGATGACAGGGAAGAAATCATTTACAATTCTCTTAACAAAACCCCCGTAAATANTAACCCATTTCCCCCCAAA-TAGAAAAGGGAACTATTTCACCCTGCNCTTTGAGGAAATTGAATAAATAGTAAATGAAGTTCTGTCTGTACAGGAAGTGTGGGTACTTGGCATTACATCTAGACAAGTAAAGACACAAGTGTTTNCTTCCAAATGAATGACATGTTTAAAAACCATC i gorGor1.Supercontig_0000485 C 0 I 10 s ponAbe2.chr21 13263805 275 + 48394510 ACATGTTTTGGTTCTAATAAAATTTCCCCTTGAGCTGTTTGGACAGATGACAGGGAAGAAATCATTTACAATTCTCTTAATAAAACCCCTTTGAATAATAACCCATTTCCCCCCAAAATAGAAAAGGGAACTATTTCACCCAGTTCTTTGAGGGAACTGAATAAATAGTAAATGAAGTTCTGTCTGTACGGGAAGCATGGGTACTTGGCATTACATCTAGAAAAGTAAAGACATGAATGTTTTCTTCCAAATGAATGACATGTTTAAAAACCATC i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158247324 275 - 196418989 ACATGCTTTGGTTCTAATAAAATTCCCCCTTAAGCTCTTTGGACAGATGACAGGGAAGAAATCATTTACAATTCTCTTAACAAAACCCCCATGAATAATAACCCATTTCCCCCCAGACTAGAAAAGGAAACTATTTCACCCTGCTCTTTGAGGGAATTGAATAAATAGTAAATGAAATTCTATCTGTACAGGAAACATGGGTACTTGGCATTACATCTAGAAAAGAAAAGACATGAGTGGTTTCTCCTAAATGAATGACATGTTTAAAAACCATC i rheMac2.chr3 C 0 C 0 a score=81048.000000 s hg19.chrUn_gl000239 9303 190 + 33824 ATCACCACCCTCTCTGTGATTACAGGTTTTGCGTGCCTTTTAACCACTGGGTGCTAGAAGCAAATTTCCATGTGAACACACCCTCcttcttcttctcctcctgctcctcccgctc------ctcctcctccttct-tttctccttctccttctccttcttct---tcttcttcctcttcttccccttcctcctctccttc s rheMac2.chr3 158247599 198 - 196418989 ATCAGGACCCTCTCTGTGATTACAGGTTTTGCATGCATTTTAACTATTGGGTGCTAGAAGAAAATTTCCATATGAGCACACcctctttcttcttctcctccccctcttccctctcctcccgttcctccctctcctcctcctcctcttccttcttcttcttctccttctccttctctttcttcttcttcctcttctttc-- i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 13264080 190 + 48394510 ATCACCACCCTCTCTGTGATTGCAGGTTTTGAGTGCATTTTAACCATTGGGTGCTAGAAGCAAATTTCCATGTGAGCACACcctctttcttcttctcctctcgctcctcccgcgc------ctcctcctccttct-tttctccttctccttctctttcttctccttcttctccctcttctccctcttcctcttcttc--- i ponAbe2.chr21 C 0 I 335 s panTro2.chrX 763668 199 + 155361357 ATCACCACCCGCTCTGTGATTACAGGTTTTGCGTGCATTTTAACCATTGGGTGCTAGAAGCAAATTTCCATGTGAGCACGCcctctttcttcttctcctcccgctcctcctgctcctcccgctcctcctccttct-tttctccttctccttctccttcttcttcctcttcttcctcttcctcctctccctcctctgcttc i panTro2.chrX C 0 C 0 e gorGor1.Supercontig_0000485 11896 10 + 32581 I a score=18209.000000 s hg19.chrUn_gl000239 9493 144 + 33824 --tctttcttctccttcttctacctcttctcc-ctcttcctc----ttcttcctcctctccttcttcttcttctttttccccttccccttcctcctcctccttctcctcctcctccttctcctcctcctcct---cttcttctccttctccttc s rheMac2.chr3 158247797 154 - 196418989 tcttcctcctctttctcctctgcttcttctcctttctttctcttctttcttcttcctcttcctcttccttctcttcctcttctttctcttcctcctcttctttctcttctttctcttcctcctcttcctcctctgcttcttctccttcttctcc i rheMac2.chr3 C 0 C 0 s panTro2.chrX 763867 118 + 155361357 --ttctccttcttctccttctccctcttctcc-ctcttcctc----ttcttcctcctctccttctccttcttccttttccccttccccatcc-ccttccacttccccttcccct----------------------------tcctcctccttc i panTro2.chrX C 0 C 0 e ponAbe2.chr21 13264270 335 + 48394510 I e gorGor1.Supercontig_0000485 11896 10 + 32581 I a score=19426.000000 s hg19.chrUn_gl000239 9637 55 + 33824 tccttctccttctccttctccttcttcttcttcttcttcttcttcttcttcttct s panTro2.chrX 763985 51 + 155361357 tcctcctcctcctcc----ccttcttcttcttcttcttcttcttcttcttcttct i panTro2.chrX C 0 C 0 s rheMac2.chr3 158247951 55 - 196418989 ctcttcctcctctccttctccttctcctcctcctcctcctccttcttcttcttct i rheMac2.chr3 C 0 I 19906 s papHam1.scaffold8155 48362 55 - 96661 tctttctcttctttcttcttcctcttcttcttcctcttctttctcttcctcctct i papHam1.scaffold8155 N 0 C 0 e ponAbe2.chr21 13264270 335 + 48394510 I e gorGor1.Supercontig_0000485 11896 10 + 32581 I a score=13300.000000 s hg19.chrUn_gl000239 9692 81 + 33824 tcttcttcttcttcttcttcttctccttctccttctccttctccttctccttctcctccttctccttctccttcttcactt s panTro2.chrX 764036 78 + 155361357 tcttcttcttcttcttcttcttcttcttcttcttctccttcttgttctcctt---ctccttctccttctccttcttcactt i panTro2.chrX C 0 C 0 s papHam1.scaffold8155 48417 69 - 96661 tctttctcttctttctcttcctcctctgcttcttctccttcttctccttcttctccctcttctccctct------------ i papHam1.scaffold8155 C 0 N 0 e ponAbe2.chr21 13264270 335 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e gorGor1.Supercontig_0000485 11896 10 + 32581 I a score=32899.000000 s hg19.chrUn_gl000239 9773 127 + 33824 caagttatggtatacatttgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacctatcaacccatcatctaggttttaaaccctgcctgcattatgtatttgtcc s gorGor1.Supercontig_0000485 11906 127 + 32581 Caagttatggtatacatttgcagaacgtgcaggtttgttacataggtatacatgtgccatgttggtttgctacacctatcaacccatcatctaggttttaagccctgcctgcattatgtatttgtcc i gorGor1.Supercontig_0000485 I 10 C 0 s panTro2.chrX 764114 127 + 155361357 caagttatgggatacatttgcagaacatgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacctatcaacccatcacctaggttttaagccctgcatgttttatgtacttgtcc i panTro2.chrX C 0 C 0 e ponAbe2.chr21 13264270 335 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=339959.000000 s hg19.chrUn_gl000239 9900 670 + 33824 taattctgtccctcccctttcccccaacccccagacaggccccagtgtgttatgttaccctctctgtgtccatgtgttctcattgttcaactccctcttatgagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatgcatgtccctgcaaaggacatgaatgcatccctttttatggctgcatagtattccatggtgtctatgtgccacattttctttatccagtttatcactgatgggcatttgggttggttccaagtctttgctgttgtgaatagGAGCACATCCTCCTGATTCAACAATGAGATCATCGTCCACTGTTCTGTTCAGGACTACGGAAAGGTCCCAGGCTGCTAAGACAATCTCGAATTCTCTCAACACCCCACAGCTTGTCAATACTGGAGGTATTCTGGTGA-TTTTTTTTTT---TTTTTGGAAAGTGGCTATTTATATATCACAAGGTTTCTTGATTACAAAAGCAGTCAACTggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggctggtggatcatgaggtcaggagatcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggt s panTro2.chrX 764241 669 + 155361357 taatgctctccctcccctttcccccaacccccagacaggccctggtgtgttatgttcccctctctgtgtccatgtgttctcactgttcaactccctcttatgagtgaaaacatgcggtgtttggttttctgtacctgtgttagtttgctgaaaatgatggcttccagcttcatccatgtccctgcaaaggacatgaacacatccttttttatggctgcatagtattccatggtgtctatgtgccacatttactttattcagtctatcactgatgggcatttgggttggttccaagtctttgctgttgtaaatagCAGCACGTCCTCCTGGTTCAACAATGAGATCATTGTCCACTGTTCTGTTCAGGCCTACGGAAAGGTCCCAGGCTGCTAAGACAATCTCGAATTCTCTCAACACCCCACAGCTTGTCAATACTGGAGATATTCTGGTGA--TTTTTTTTG---GGGGGGGGAAGTGGCTGTTTATATATCACAAGGTTTCTTGATTATAAAAACAGTCAACTAGGcaggcacagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggtggatcatgaggtcaggagatcgagaccagcctgcccaacatggtgaaaccctgcctctaccaaaaatacaaaaattaaccagggatggtggt i panTro2.chrX C 0 I 259 s gorGor1.Supercontig_0000485 12033 671 + 32581 taatgctgcccctcccntttccccnaacccccagacaggccccagtgtgttatgttccgctctctgtgtccatgtgttctcattgttcaactccctcttatgagtgagaacatgtggtgtttggttttctgttcctgtgttagtttgctgagaaagttggcttccagcttcatccatgtccctgcaaaggacatgaatgcatccctttttatggctgcatagtattccatggtgtctatgtgccacattttctttatccagtttatcactgatgggcatttgggttggttccaagtctttgctgttgtgaatagGAGCACATCCTCCTGATTCAACAATGAGATCATCNTCCACTGTTCTNTTCAGGACTACGGAAAGGTCCCAGGCTGCTAAGACAATCTCGAATTCTCTCAACACCCCACAGCTTGTCAATACTGGAGGTATTCTGGTGATTTTTTTTTTT---TTTTTGGAAANTGGCTATTTATATATCACAAGGTTTCTTGATTACAAAAGCAGTCAACTggccaggcgcagtggctcatgcccgtaatcccagcactttgggaggccaaggctggtggatcacgaggtcaggagatcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggt i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13264605 672 + 48394510 taatgctgtccctcccctttcccccaacccccagacaggccccggtatgtgatgttcccctccctgtgtccatgtgttctcattgttcaactccctcttatgagtgagaacatagggtgtttggttttctgttcctgtgttagtttactgagaatgatggcttccagcttcatccatgtctctgcaaaggacatgaacgcatccttttttatggctgcatagtattccatggtgtctatgtgccacattttctttatccagtctatcactgatgggcatttgggttggttccaagtctttgctgttgtaaatagGAGCACATCCTCCTGATTCAAAAATGAGATCATCGTCCACTGTTCTGTTCAGGACTATGGAAAGGTCCCAGGCTGCTAAGACAATCTCGAATTCTCTCAACACCCCACAGCTTGTCAATACTGGAGGTATTCTGGTGA--TTTTTTTTGAGCGGGGGGGGAAGTGGGTATTTATATATCACAAGGTTTCTTGATTACAAAAGCAGTCAGCTggctgggcacggtggctcatgcctgtaatcccagcactttgggaggccaagatgggtggatcaagaggtcaggagatcgagaccagcctggccaacatgctgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggt i ponAbe2.chr21 I 335 I 234 e rheMac2.chr3 158248006 19906 - 196418989 I a score=34194.000000 s hg19.chrUn_gl000239 10570 381 + 33824 catccttttttacggctgcatagtattccatgcatatgtggcacattttctttaagggtgaaggttgggaggagggaaaggatcagaaaaaaataacttattgtgtgcaaagctttgtacctgggtgataaaataatctgtacaacaaacccctatgacatgagtttacctatataacaaacccacacatgtacccctagacctaaataaaagtGTTtttgtttgtttgtttttt-gtttttgttgtgtttgtatgtttgtaatcccaactacttgggaggctgaggcaggagaattgcttgaacccgggaggtgtaggttgcagtgatcagagatcgctccagcctggctgacagagtgagactccatctccaaaaaaaaa s gorGor1.Supercontig_0000485 12704 382 + 32581 catccttttttatggctgcatagtattccatgcatatgtggcacattttctttaagggtgcaggttgggaggagggaaaggatcagaaaaaaataacttattgtgtacaaagctttgtacctgggtgacaaaataatctgtacaacaaacccctacggcatgagtttatctatataacaaacccacacatgtacccctggacctaaataaaagtgttttcgtttgtttgttTTTTTGTTTTTGTTGTGTTTGTATGTTtgtaatcccaactacttgggaggctgaggcaggagaattgcttgaacccgggaggtgtaggttgcagtgatcagagatcgctccagcctgggtgacagagtgagactccatctccaaaaaaaaa i gorGor1.Supercontig_0000485 C 0 I 8 e ponAbe2.chr21 13265277 234 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 764910 259 + 155361357 I a score=673878.000000 s hg19.chrUn_gl000239 10951 1339 + 33824 aaaaaCACTCGTCTCTCTACCTACCTGCTCTCTTTCCCCATTCCTGTTACATAGATTACTTCTTACCTCCCCAGGTACCCTGGAAGGTCAGAGTCTTCCCTTCTTCCTTCTATTTAAATAAAACAATATGAGAAAACTGCTTGACAAGTGGTTCCAAGCATCAGTGGGGTGAAAAAACAATATTCTTCATGATGTGGGTAACACCAGG----AAAAAAAATCAGTGTCTCTtgtccataggttctcatcatttagctctcacttttaTTTTTAATTAATTAA--ttttttttgagacagagtctcactctgtcacccaggctggactgcagtggcaagatctcggctcactgtacactccacctcccgagttcaagtgattctcctgggtca-------------ctgggattacaggtgtctgccagcactcctggctaacttttgtattttcagtagagacaggacttcaccatattggtcaggctggtctagaactcctgtcctcaaatgatctgccctcctcggcctcccagagtgctggaattacaggcatgagccactgtgcccagcTGGTAATGCTCTTTCATGATAGGATCtttatttttaaatttatttatttattttgagactgagtcccactctgccgcccaggctggagtacagtggcgcgatctcggctcactgcaaccttcaccacccaggttcaagtgagtcttctgcctcagtgacccccaagtgtctaggattacaggcacgcgccaccaagcccagctaatttttgtatttttaggagaaatgaggtttcatcatgttggccaggctggtctcaaactcctgaccttaagtgatccacccaccttggcctcccaatgtgatggaattataagtgtgagccaccacacccagctggctcccacttttaaatgaaaacgtgtggtatttagttttctgttcctgcattggtttgctaagcata-----ccatagctccagctgtgttcctgtaaaggaaatgagctcatacttttttatggctgcatagtattccatgcatatgtggcacattttctttaagggtgcaggttgggaggaggaaatggatcagaaaaaaataacttattgtgtacaaagttt-gtacctgggtgacaaaataatctgtacaacaaacccctatgacatgagtttacctatataacaaacccgcacaggtacccctggacctaaaat-aaaGTGTTtttgtttgtttgtttgtttgtttttgttg--------tgtttgtatgtttgtttgagatggagtctctgcctttgttgctcaggccagagtacagtggtgcagtcttggctcactgcaacctccacctcccag s ponAbe2.chr21 13265511 1351 + 48394510 AAAAACACTCATCTCTCTACCTGCCTGCTCTCTCTCCCCATTCCTGTTACATAGATTAGTTCTTACCTCCCCAGGTACCCTGGAGGGTCAGGGTCTTCCCTTCTTCC----ATTTAAATAAAACAATATGAGAAAACTGCTTGACAGGTGGTTCCAAGCATCAGTGGGGTGAAGAAACAATATTCTTCGTGATGAGGGTAACACCAGG----AAAAAAAATCAGTGTCTTTTGTCCATATGTTTTCACCATTTAGCTCTCACTTTTATTTTTAATTAATTAA-tttttttttgagacagagtctcactctgtcacccaggctggagggcagtggcacgatctcggctcactgcagactccgcctcctgggttcaagcgattctcctgcctcagcctccagagtagctgggattacaggtgtccaccaccacgcccggctaacttttgtaattttagtagagatggggtttcatcatgttggtcaggctggtctagaactcctgtcctcaagtgatctgcccacctcggcctcccaaactgctgggattacaggtgtgagccactgtgcctggccGGTAactctctttcatgatagaatctttatttgtaaatttattta-ttattttgagacagagtcccactctgccacccaggatggagtacagtggcatgatctcagctcactgcaagcttcaccacccaggttcaagtgattctcctgcctcagcgccccccgagtgtctaggattacaggcacgcgcccccaggcccagctaatttttgtatttttagtagaaatgaggtttcatcatgttggccaggctggtctcaagctcctgaccttaagtgatccacccaccttggcctcccaatgtgatcgaattacaagtgtgagccaccatgcccggctggctcccacttttaaatgaaaacatgtggtatttagttttctgttcctgcattggtttgctaagcataatggcctccagcttcatctgtgttcctgcaaaggatatgagctcatccttttttatggctgcatagtattctacacatatgtggcacattttctttaagggtgcaggttggaagaagggaaagggtcag-aaaaaataacttactgggtacaaactta-gtacctgggtgacaaaataatctgtacgacaaactcctatgacatgagtttacctatataacaaacccacacaggta-ccctggacctaaaataaaagtGTTtttgttt-tttgtttgtttgtttttgttg--------tgtttgtttgtttgtttgagacggagtctctgcctctgtcgctcaggccagagtacagtggtgcaatcttggctcactgcaacctccacctcccag i ponAbe2.chr21 I 234 C 0 s gorGor1.Supercontig_0000485 13094 1355 + 32581 aaaaaaaCTCGTCTCTCTACCTACCTGCTCTCTTTCCCCATTCCTGTTACATAGATTACTTCTTACCACCCCAGGTACCCTGGAAGGTCAGGGTCTTCCCTTCTTCCTTCTATTTAAATAAAACAATATGAGAAAACTGCTTGACAGGTGGTTCCAAGCATCAGTGGGGTGAAGAAACAATATTCTTCGTGATGTGGGTAACACCAGG---AAAAAAAAATCAGTGTCTCTtgtccataggttctcatcatttagctctcgcttttaTTTTTAATTAATTAA-tttttttttgagacagagtctcactctgtcacccagtctggactgcagcggcaagatctcggctcactgtacactccacctcccgagttcaagtgattctcctgcctcaacctcccaggtcactgggattacaggtgtctgccagcactcctggctaacttttgtattttcagtagagacggtacttcaccatattggtcaggctggtctagaactcctgtcctcaaatgatctgccctcctcggcctcccagagtgctgggattacaggcatgagccactgtgcccggctGGTAACGCTCTTTCATGATAGAATCtttatttttaaatttatttatttattttgagactgagtcccactctgccgcccaggctggagtacagtggcatgatctcggctcactgcaaccttcaccacccgggttcaagtgagtcttctgtctcagtgccccccgagtgtctaggattacaggcacgcaccaccatgcccagctaatttttgtatttttaggagaaatgaggtttcatcatgttggccaggctggtctcaaactcctgaccttaagtgatccacccaccttggcctcccaatgtgatggaattacaagtgtgagccaccacacccggctGgctcccacttttaaatgaaaacgtgtggtatttagttttctgttcctgcattggtttgctaagcata-----ccatagctccagctgtgttcctgcaaaggatatgagctcatccttttttatggctgcatagtattccatgcatatgtggcacattttctttaagggtgcaggttgggaggagggaatggatcagaaaaaaataacttattgtgtacaaagttt-gtacctgggtgacaaaataatctgtacaacaaacccctatgacatgagtttacctatataacaaacccacacaggtacccctggacctaaaataaaagtGTTtttgtttgtttgtttgtttgtttttgttg--------tgtttgtatgtttgtttgagatggagtctctgcctttgttgctcaggccagagtacagtggtacaatcctggctcactgcaacctccacctcccag i gorGor1.Supercontig_0000485 I 8 C 0 s panTro2.chrX 765169 1367 + 155361357 AAAAACACTCAGCTCTCTACCTACCTGCTCTCTCTCCCCATTCCTGTTACATAGATTACTTCTTACCTCCCCAGGTACCCTGGAGGGTCAGGGTCTTCCCTCCTTCCTTCTATTTAAATAAAACAATATGAGAAAACTGCTTGACAGGTGGTTCCAAGCATCAGTGGGGTGAAGAAACAATATTCTTCGTGATGCGGGTAACACCAGGAAAAAAAAAAAATCAGTGTCTCTtgtccatatgttctcatcatttagctctcacttttaTTTTTAATTAATTAAttttttttttaagacagagtctcactctgtcacccaggctggactgcagtggcgtgatctcggctcactgcagactctgcctcctgggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggtgtccaccaccacgcccggctaacttttgtaattttagtagagacggggtttcatcatgttggtcaggctggtctagaactcctgtcctcaggtgatctgcctaccttggcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccGGTAACTCTCTTTCATGATAGAttctttatttttaaatttatttatttattttgagacagagtcccactctgccacccaggatggagtacagtggcatgatctcagctcactgcaacttttaccaccctggttcaagtgattatcctgcctcagcgccccccgagtgtctaggattacaggcacgcgacaccaggcccagctaatttttgtatttttagtagaaatgaggtttcatcatgttggccaggctggtctcaagctcctgaccttaagtgatccacccaccttggcctcccaatgtgatggaattacaggtgtgagccaccacgcccggctGgctcccacttttaaatgaaaacatgtggtatttagttttctgttcctgcattggtttgctaagcata-----ccatagctccagctgtgttcctgcaaaggatatgagctcatccttttttatggctgcatagtattccacgcatatgtggcacattttctttaagggtgcaggttgggagaagggaaaggatcag-aaaaaataacttactgggtacaaagcttagtacctgggtgacaaaataatctgtacaacaaactcctatgacatgagtttacctatataacaaacccacacaggtacccctggacctaaaataaaagtGTTtttgtttgtttgtttgtttgtttttgttgtgtttgtttgtttgtttgtttgtttgagacggagtctctgcctctgtcactcaggccagagtacagtggtgcaatcttggctcactgcaacctccacctcccAA i panTro2.chrX I 259 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=15937.000000 s hg19.chrUn_gl000239 12290 32 + 33824 AAAAAGAAAGCAAATACGGCAAACAGCATCAG s panTro2.chrX 766536 32 + 155361357 AAAAAGAAAGCAAACACGGCATGCAGCATCAG i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 14449 32 + 32581 AAAAAGAAAGCAAATATGNCAAACAGCATCAG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13266862 32 + 48394510 CAAAAGAAAGCAAACACGGCATGCAGCATCAG i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_1120 74708 32 + 166581 AAACTGGAGATAAATCTGTCTTACTTCATGGG i xenTro2.scaffold_1120 N 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=2309.000000 s hg19.chrUn_gl000239 12322 18 + 33824 ---CTTTTTAGAAGAAGCTG----------------------G s xenTro2.scaffold_1120 74740 40 + 166581 ---CTTTCGTGAAGAGGAGAGCATAGGTAACAGAGCATAGGTG i xenTro2.scaffold_1120 C 0 C 0 s ponAbe2.chr21 13266894 18 + 48394510 ---CTTTCTAGAAGACGCTG----------------------G i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 14481 18 + 32581 ---CTTTTTAGAAGAAGCTG----------------------G i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 766568 18 + 155361357 ---CTTTCTAGAAGATGCTG----------------------G i panTro2.chrX C 0 C 0 s petMar1.Contig35034 929 18 + 7996 CCTCTTTTAGTGAGCGGT------------------------- i petMar1.Contig35034 N 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=19714.000000 s hg19.chrUn_gl000239 12340 83 + 33824 AGCTTC------TGGTGGGTGGACCA-----------------------------------TGATGGAGCTTCTGGTG----GGTGGGCGATGCTGGAGCTTCTGGTGGGTGGACGATGCTGAATCTT s panTro2.chrX 766586 45 + 155361357 AGCTTC------TGGTGGGTGGACCA-----------------------------------TGCTGGAGCTTCTGGTG----GGTGGACC-------------------------------------- i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 14499 83 + 32581 AGCTTC------TGGTGGGTGGACCA-----------------------------------TGCTGGAGCTTCTGGTG----GGTGGGCGATGCTGGAGCTTCTGGTGGGTGGACGATGCTGAATCTT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13266912 82 + 48394510 AGCTTC------TGGTGGGTGGACCA-----------------------------------TGCTGGAGCTTCTGGTG----GGTGGACCATGCTGGAGCTTCTGGTGAGTGGACCTTG-TGGAGCTT i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_1120 74780 83 + 166581 GGCTTT------AGGTGGAGGGAGCA-----------------------------------TAGGTGGGCTTTAGGTG----GAGAGAGCATAGGTGGGCTTTAGGTGGAGGGAGCATAGGTGGGCTT i xenTro2.scaffold_1120 C 0 C 0 s danRer6.chr20 49316518 83 + 51884995 AGATAT------CGGTATATAGATTA-----------------------------------TTATACAGATATCGGTA----TATAGATTATTATACAGATATCGGTATATAGATTATTTTACAGATA i danRer6.chr20 N 0 C 0 s petMar1.Contig35034 947 122 + 7996 AGCTTCAACTGATGATGTAGGGATAagcgtgtggtgagctaatgaatgatgtagcgtgtggtgatgtagcgtgtggtgatgtagcgtgtggtgatgtagcgtgtggtgagctaatgatgatg------ i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=17889.000000 s hg19.chrUn_gl000239 12423 94 + 33824 CTGGTGGG-TGGACCATGGTGGAGCTTCTGGTGGG-TAAATAATGCTGGAGCTTCTGGTGAGTAGACCATGGTGGAGCTTCT-----------------GGTGGGTGGACCAT s panTro2.chrX 766631 79 + 155361357 ----------------TGGTGGAGCTTCTGGTGGG-TAAATAATGCTGGAGCTTCTGGTGAGTAGACCAGGGTGGAGCTTCT-----------------GGTCGGTAAATTAT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 14582 94 + 32581 CTGGTGGG-TGGACTATGGTGGAGCTTCTGGTGGG-TAAATCATGCTGGAGNTTCTGGTAGNTGGACCAAGCTGGAGCTTCT-----------------GGTGGGTGGACCAT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13266994 94 + 48394510 CTGGTGGG-TAGACCAGGGTGGAGCTTCTGGTGGG-TGGATTATGCTGGAGCTTCTGGTGGGTAAATCATGCTGGAGCTTCT-----------------GGTGGGTGGACCAT i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_1120 74863 94 + 166581 TAGGTGGA-GGGAGCATAGGTGGGCTTTAGGTGGA-GGGAGCATAGGTGGGCTTTAGGTGGAGAGAGCATAGGTGGGCTTTA-----------------GGTGGAGGGAGCAT i xenTro2.scaffold_1120 C 0 C 0 s gasAcu1.chrXIX 1554014 88 + 20240660 CTGAAGTAGTAGCTAGTGGGACTGCCCT-GACGTAGTGGCTGGTGGGACTGCCCTGACGTAGTGGCTGGTGGGACTGACCTG--------------------ACGTAGG---- i gasAcu1.chrXIX N 0 C 0 s danRer6.chr20 49316601 94 + 51884995 TCGGAATA-TAGATCATTATACAGATATCGGTATA-TAGATCATTATACAGCTATCGGGATATAGATTATTATACAGATATG-----------------GGTATATAGATTAT i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 1069 106 + 7996 -tcgcgtg-tgg----tgatgtagcgtgtggtgaG-CTAATGCTGATGTAGCGTGTGACACAAtacccatcggtgagctcctccggcaggcaaggctgcgttggctgggtcat i petMar1.Contig35034 C 0 I 305 e rheMac2.chr3 158248006 19906 - 196418989 I a score=11048.000000 s hg19.chrUn_gl000239 12517 42 + 33824 GCTGGGGCTTCTGGTGGGTGAACCATACTGGAGCTTCTGGTA s panTro2.chrX 766710 42 + 155361357 GCTGGAGCTTCTGGTGGGTGGACCATAGTGGAGCTTCTGGTG i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 14676 42 + 32581 GCTGGGGCTTCTGGTGGGTAGACCATGGTGGAGCTTCTGGTG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267088 41 + 48394510 GCTGGAGCTTCTGGTGGGTAAACCATGCT-GAGCTTCTGGTG i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_1120 74957 42 + 166581 AGGTGGGCTTTAGGTGGAGGGAGCATAGGTGGGCTTTAGGTG i xenTro2.scaffold_1120 C 0 C 0 s gasAcu1.chrXIX 1554102 34 + 20240660 -----GGCTGGTGGGACTGACCTGACGTTGTGGCTGGTG--- i gasAcu1.chrXIX C 0 C 0 s danRer6.chr20 49316695 42 + 51884995 TATACAGTTATCGGTATATAGATTATTATACAGCTATCGGGA i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 1480 41 + 7996 gtagggggcacaggtgg-tgcaccagccagtcatctcagtca i petMar1.Contig35034 I 305 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-4825.000000 s hg19.chrUn_gl000239 12559 64 + 33824 -------GGTGGGCCATGGTGGAGCT-----------TCTGGTGGGTAGAC--------CATGGTGGAGCTT---------------CTGGTGGAT-GGACCATGC s panTro2.chrX 766752 64 + 155361357 -------GGTGGATCATGCTGGAGTT-----------TCTGGTGGGTGGAC--------CATGGTGGAGCTT---------------CTGATGGGT-GGACCATGC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 14718 63 + 32581 -------GGTAGACCATGGTGGAGCT-----------TCTGGTGGATGGAC--------CATGCT-GAGCTT---------------CTGGTGGGT-GAAGCATGC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267129 63 + 48394510 -------GGTGGACCATGCTGGAGCT-----------TCTGGTGGGTGGAC--------CATGCT-GAGCTT---------------CTGGCGGGT-GGACCATGG i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_1120 74999 64 + 166581 -------GAGGGAGCATAGGTGGGCT-----------TTAGGTGGAGGGAG--------CATAGGTGGGCTT---------------TAGGTGGAG-GGAGCATAG i xenTro2.scaffold_1120 C 0 I 1 s fr2.chrUn 379683239 63 + 400509343 -------GATGGAGCATCCCAGAGGA-----------TCTGGTGTGAGGATCTA----ATGTGAGGT----T---------------CCGGTGTGA-GGATC-TGT i fr2.chrUn N 0 I 2 s gasAcu1.chrXIX 1554136 64 + 20240660 -----------GGCCTGACCTGACGT-----------AGTGGCTGGTGGGCCTG----ACCTGACGTAGTAG---------------CTGGTGGGACTGACC-TGA i gasAcu1.chrXIX C 0 I 3 s danRer6.chr20 49316737 62 + 51884995 -------TATAGATTATtatacagat-----------atgggtatatagat--------tattatacagata---------------tcggtatat-agat--tat i danRer6.chr20 C 0 I 2 s petMar1.Contig35034 1521 105 + 7996 gtcgacccgtggcacctgctgggtctgcccagtgacctcctgccagcgggcgttcgacgcctcacgtggcctcaaggtgcacatggcctggcacaa-gcgtcgtgg i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-78632.000000 s hg19.chrUn_gl000239 12623 115 + 33824 TGAGCTTCTGGTGGGTGAAGCA-----TGCTGGAGTTT--CTGGT--AGGTGGACCATAGTGGAGCTTCTGGTGGATAG-ACCA-------TGGTGGA-GCTTCTGGTGGGTGGAGC------ATGCTG-GAGCTTCTGG s panTro2.chrX 766816 64 + 155361357 ------------------------------------------------------------TGGAGCTTCTGGTGGGTGG-GTCA-------TGCTGGA-GCCTCTGGGGGGTGGAGC------ATGCTG-GAACTTCTGG i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 14781 90 + 32581 ------------------------------TGGAGTTT--CTGGT--AGGTGGACCATAGTGGAGNTTCTGGTGGATAG-ACCA-------TGGTGGA-GCTTCTGGTGGGTGGAGC------ATGCTG-GAGCTTCTGG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267192 89 + 48394510 ------------------------------TGGAGCTT--CTGGT--GGGTGAACCATGCTGGAGCTTCTGGTGGGTAA-ACCA-------TGCT-GA-GCTTCTGGTGGGTGGACC------ATGCTG-GAGCTTCTGG i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_1120 75064 115 + 166581 TGGGCTTTAGGTGGAGAGAGCA-----TAGGTGGGCTT--TAGGT--GGAGGGAGCAAAGGTGGGCTTTAGGTGGAGAG-AGCA-------TAGGTGG-GCTTTAGGTGGAGGGAGC------ATAGGT-GGGCTTTAGG i xenTro2.scaffold_1120 I 1 C 0 s fr2.chrUn 379683304 90 + 400509343 TGAGGTTCTAGTG-----------------TGAGGTT---CCGGT--GTGAGGATCTA-----------ATGTGAGG---ATCT-------GGTGTGA-GGTTCCGGTGTGAGGATCT-----GTTGTG-AGGTTCTAGT i fr2.chrUn I 2 I 22 s gasAcu1.chrXIX 1554203 94 + 20240660 AGTGGCT----GG-----------------TGGGACTGACCTGAC--GTAGGGGCT--------------GGTGGGCCTGACCTGACGTAGTGGCTGGTGGGCCTGACCTGACGTAGTGG---CTGGTG-GGACT----- i gasAcu1.chrXIX I 3 I 18 s oryLat2.scaffold2468 781 96 + 14302 TGAGCCTCTCAGG-----------------TGAGGCGAGCCTCTCAGGTGAGGCCCTC-----------AGGTGAGTC--ACTT-------TGGTTGA-GGCCCTTACGTGAGGCCCT-----TTGGTT-AGCCTCTCAG i oryLat2.scaffold2468 N 0 I 22 s danRer6.chr20 49316801 90 + 51884995 ------------------------------tacagcta--tcggt--atatagattattatacag----atatcggt---atat-------agattat-tatacagatatcggtatatagattattata-cagctatcgg i danRer6.chr20 I 2 I 22 s petMar1.Contig35034 1626 112 + 7996 --------tgacgtcacggccactTGTTGTTGTAGCGT--GCAGT--GAGCCAATGATGATGTAGCGTGTGGTGATATA-GCGT-------GTGGTGA-GCTAATGGTG-ATGGAGC------GTGCAGTGAGCCAATGA i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-22267.000000 s hg19.chrUn_gl000239 12738 84 + 33824 ---TGGGGTAAATCATGCTGGAGCTTCTGGTGG---GTAAATCATGCTGGAGCTTCT----GGTGAGTAGACCA--CGGTGGAGCTTCTGGTGGAT s ponAbe2.chr21 13267281 83 + 48394510 ----TGGGTGGACCATGCTGGAGCTTCTGGTGG---GTGGACCATAGTGGAGCTTCT----GATGGGTGGACCA--TGCTGGAGCTTCTGGTAGGT i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 14871 84 + 32581 ---TGGGGTAAATCATGCTGGAGCTTCTGGTGG---GTAAATCATGCTGGAGCTTCT----GGTGNGTAGNCCA--CGGTGGAGCTTCTGGTGGAT i gorGor1.Supercontig_0000485 C 0 C 0 s xenTro2.scaffold_1120 75179 82 + 166581 ----TGGAGAGAGCATAGGTGGGCTTTAGGTGG---AGGGAGCATAGGTGGGCTTTA----GGTGGAGAGAGCA--TAGGTGGGCTTTAGGTGGA- i xenTro2.scaffold_1120 C 0 T 142 s fr2.chrUn 379683416 51 + 400509343 ---TAATGTGAGGATCTGGTGTGAGGTT---------------------------CC----GGTG-----------TGAGGATCTAATGTGAGGAT i fr2.chrUn I 22 I 2 s gasAcu1.chrXIX 1554315 84 + 20240660 ---GTGGGCCTGACCTGCCGTAGTGGCTGGTGG---GCCTGACCTGCCGTAGGGGCT----GGTGGGCCTGACC--TGACGTAGTGGCTGGTGGGC i gasAcu1.chrXIX I 18 I 2 s oryLat2.scaffold2468 899 90 + 14302 ---TTAGGTGAGGCCCTCAGGTGAGGCCCTTAG---GTGAGTCCTTCAGGTGAGGCCCTTAGGTGAGCCTTTCAGGTGAGGCCTTCAGTTgaggcc i oryLat2.scaffold2468 I 22 I 2 s danRer6.chr20 49316913 87 + 51884995 ---tgggtatataGATTATTATACAGCTATCGGTATATAGATCATTATACAGATATT----GGTATATAGATCA--TTATACAGCTATTGGTATAT i danRer6.chr20 I 22 I 1 s petMar1.Contig35034 1738 87 + 7996 TGATGTAGCGTGTGGTGATATAGCGTGTGGTGA---GCTAATGATGATATAGCGTGT----GGTGAGCTAATGA--TGATGTAGCGTGTGGTGAGC i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 766880 0 + 155361357 C a score=-19669.000000 s hg19.chrUn_gl000239 12822 39 + 33824 AAATTATGCTGGAGCTTCTCGTGGGTAAATCATGCTGGA s ochPri2.scaffold_84348 3625 38 + 4949 AAGTTATGATGCAGATTCTCCAGCTGGAACAAGGATGG- i ochPri2.scaffold_84348 N 0 C 0 s ponAbe2.chr21 13267364 39 + 48394510 GGACCATGGTGGAGTTTCTGGGGTGTAAATTATGCTGGA i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 14955 39 + 32581 AAATTATGCTGGAGCTTCNCNTGGGTAAATCATGCTGGA i gorGor1.Supercontig_0000485 C 0 C 0 s fr2.chrUn 379683469 38 + 400509343 GGTGTGAGGTAA-GGTTCCGGTGTGAGGATCTAATGTGA i fr2.chrUn I 2 C 0 s gasAcu1.chrXIX 1554401 39 + 20240660 GACCTGACGTAGTGGCTGGTGGGCCTGACCTGACGTAGT i gasAcu1.chrXIX I 2 C 0 s oryLat2.scaffold2468 991 33 + 14302 taggtga------ggcccttaggtgaggccttcaggtga i oryLat2.scaffold2468 I 2 C 0 s danRer6.chr20 49317001 26 + 51884995 -------------GATTATTATACAGATATCGGTATATA i danRer6.chr20 I 1 C 0 s petMar1.Contig35034 1825 39 + 7996 TAATGATGATGTCGCGTGTGGTGAGCTAATGGTGATGTA i petMar1.Contig35034 C 0 C 0 e xenTro2.scaffold_1120 75261 142 + 166581 T e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 766880 0 + 155361357 C a score=-37392.000000 s hg19.chrUn_gl000239 12861 146 + 33824 GCTTCTGGTGGGTGGACCATGCTGGAGCTTCTCATGGGTAAAT---TA----------TGCTGGAGCTT---CT-GGTGGGTGGACCATGCTGGAGCTTCTGGTGAGTGG-AC-------CATGCTGGAGCTTCTGGTGGGTG---GATCATGCTGGAGCTTCTGGTGGGTGGA s gorGor1.Supercontig_0000485 14994 146 + 32581 GCTTCTGGTGGGTGGACCATGNTGGAGCTTCTCATGGGTAAAT---CA----------TGCTGGAGCTT---CT-GGTGGGTGGACCATGCTGGAGCTTCTGGTGAGTGG-AC-------CATGCTGGAGCTTCTGGTGGGTG---GATCATGCTGGAGCTTCTGGTGGATGGA i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267403 146 + 48394510 GCTTCTGGTGGGTGGACCATAGTGGAGCTTCTGGTGGGTAAAT---TA----------TGCTGGAGCTT---CT-GGTGGGTGGATCATGGTGGAGCTTCTGGTGGGTGG-AC-------CATGCTGGAGCTTCTGGTGGGTG---GACCATGTTGGAGCTTCTGGTGGGTGGG i ponAbe2.chr21 C 0 C 0 s ochPri2.scaffold_84348 3663 139 + 4949 ------GGTGAGTGGTACTTGATGG-GCTTTTCCC-AATAGGC---TA----------GGCAGGAGCCC---TTGGGTGGGCAGCCCAGACAGAAGCCCTTGGTGGGCGG-CC-------CAGGCAGGAGCCCTTGGTGGGCG---GCCCAGGCAGGAGCCTTGGGTGGGCGGC i ochPri2.scaffold_84348 C 0 C 0 s xenTro2.scaffold_1120 75119 146 + 166581 GCTTTAGGTGGAGAGAGCATAGGTGGGCTTTAGGTGGAGGGAG---CA----------TAGGTGGGCTT---TA-GGTGGAGAGAGCATAGGTGGGCTTTAGGTGGAGGG-AG-------CATAGGTGGGCTTTAGGTGGAGA---GAGCATAGGTGGGCTTTAGGTGGAGGGA i xenTro2.scaffold_1120 T 142 N 0 s fr2.chrUn 379683507 133 + 400509343 GGATCTGGTGTGAGGTTCCGGTGTGAGGATCTAATGTGAGGAT---CT----------AGTGTGAGGTT---CC-ggtgtgaggatct-------------ggtgtgaag-at-------ctggtgtgaggatctggtgtgag---ggtctggtgtgaggatctagtgtgaggg i fr2.chrUn C 0 C 0 s gasAcu1.chrXIX 1554440 145 + 20240660 GGCTGGTGGGCCTGACCTGCCGTAGTGGCT----GGTGGGACTGACCTGCCGTAGGGGCTGGTGGGACTGACCT-GACGTAGGGGCT--------------GGTGGGCCTGAC-------CCGCCGTAGGGGCT---GGTGGGCCTGACCTGACGTAGGGGCTGGTGGGACTGA i gasAcu1.chrXIX C 0 C 0 s oryLat2.scaffold2468 1024 133 + 14302 ggcccttaggtgaggccctcaggtgaggccctcaggtgagcct---ct----------caggtgagcct---ct-caggtgaggccctTA-----------GGTGAGCCT-AT-------CAG--GTGAGGCCTTCAGGTGAG---GCCCTTAGGTGAGGCCCTCAGGTTAGGC i oryLat2.scaffold2468 C 0 C 0 s danRer6.chr20 49317027 139 + 51884995 GATTATTATACAGCTATCGGAATATAGATTATTATACAGATAT---CG----------GTATAGAGATT---AT-TATACAGCTATC--------------GGGATATAG-ATTATTATACAGATATGGGTATATAGATTATT---ATACAGATATCGGTATATAGATTATTAT i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 1864 135 + 7996 GCGTGTGGTgagctaatgatgatgttgcgtgtggtgagctaat---ga----------tgatgttgcat---gt-ggtga-----------tgtagcgtgtggtgagcta-at-------gatgatgtagcgtgtggtgagct---aatgatgatgtagcgtgtggtgagctaa i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 766880 0 + 155361357 C a score=-79080.000000 s hg19.chrUn_gl000239 13007 81 + 33824 TCATGCTGGAGCTTCTGGTGGATGGACCATGCT------------------G--GAGCTTCTGGTG----------------------------------------------------GGTGGACAATGCTGGAGC---T-TCT------GGTGAGTA------------GACCA s gorGor1.Supercontig_0000485 15140 133 + 32581 CCATGCTGGAGCTTCTGGTGGGTGGACCATGCT------------------G--GAGCTTCTGGTGAGTAGACCATTGTGGGAGCTTCTTTGAGGTAAATTTGCTGGAGCTTCTGATGGGTGGACCATGCTGGAGC---T-TCT------GGTGGGTG------------GACCA i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267549 65 + 48394510 CCATGCTGGAACTTCTGGTGGGTGGATCATGGT------------------G--GAGCTTCTGGTT----------------------------------------------------GGTGGACCATGCTGGAGC---T----------------------------------- i ponAbe2.chr21 C 0 T 296 s ochPri2.scaffold_84348 3802 77 + 4949 CAG---CAGAGCCCTGAGTGGGCGCCCCA-GCC------------------A--GAGCCT-TGGTG----------------------------------------------------GGCGGCCCAGGCAGGAGC---TCTTG------GGTGGGCA------------GTCCA i ochPri2.scaffold_84348 C 0 N 0 s xenTro2.scaffold_333 638338 81 - 1332337 CGAAGCTGGTTCTTCTGGTCCATCAACAAAGCT------------------G--GTCCTTCTGGTC----------------------------------------------------CATCAACAAAACTGGTCC---T-TCT------GGTCCATC------------AACAA i xenTro2.scaffold_333 N 0 C 0 s fr2.chrUn 379683640 69 + 400509343 -----------tctggtgtgaggATCTAGTGTG------------------A--GAATCTGTTGTG----------------------------------------------------AGGGTCTGGTGTGAGGAT---C-TAG------TGTGAGGT-------------TCCG i fr2.chrUn C 0 C 0 s gasAcu1.chrXIX 1554585 82 + 20240660 -----------CCTGACGT-AGTAGCTGGTGCG------------------ACTGACCTGCCGTAG----------------------------------------------------GGGCTGGTGGGCCTGACCTGAC-GTAGTAGCTGGTGGGAC----------TGACCTG i gasAcu1.chrXIX C 0 C 0 s oryLat2.scaffold2468 1157 69 + 14302 -----------CCTCAGGTGAGCCTCTCaggtg------------------a--ggccttcaggtg----------------------------------------------------aggcccttaggtgaggcc---c-tta------ggtgaggc-------------cctc i oryLat2.scaffold2468 C 0 C 0 s danRer6.chr20 49317166 100 + 51884995 -----------ACAGATATCGGTATATAGATTATTATACATTTATCGGTATA--TAGATTATTATA----------------------------------------------------CAGCTATCGGGATATAGA---T-TAT------TATACAGCTATCGGTATATAGATTA i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 1999 81 + 7996 tgatgatgtCGCGTGTGGTGAGCTAATGGTGAT------------------G--TAGCGTGTGGTg----------------------------------------------------agctaatgatgatgttgc---g-tgt------ggtgagct------------aatga i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 766880 0 + 155361357 C a score=-57212.000000 s hg19.chrUn_gl000239 13088 42 + 33824 ---------------TAGTGGGAGCTTCTTGG-------AGGTA-------AATTATGCTGGAGCTTC-------TGA s gorGor1.Supercontig_0000485 15273 41 + 32581 ---------------TGGTGG-AGCTTCTGGT-------GGGTA-------AATTATGCTGGAGCTTC-------TGG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267318 15 + 48394510 ---------------TAGTGG-AGCTTCTGA----------------------------------------------- i ponAbe2.chr21 T 296 C 0 s xenTro2.scaffold_333 638419 56 - 1332337 ----------------------AACTTGTCCTTTAACAAAAGTAGTCCATCAACAAAGCTGGTCCTTCAACAAATTGG i xenTro2.scaffold_333 C 0 C 0 s fr2.chrUn 379683709 29 + 400509343 ---------------GTGTGA-GGATCTTGTG---------------------------TGAGGGTCTAG-----TG- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIX 1554667 38 + 20240660 ---------------ACGTAG-GGGCTGAGGG-------ACTGA-------CCTGACGTAGGGGCT---------GG- i gasAcu1.chrXIX C 0 C 0 s oryLat2.scaffold2468 1226 42 + 14302 ---------------aggtga-ggcccttagg-------tGAGT-------CCTTCAGGTGAGGCCCTTA-----GG- i oryLat2.scaffold2468 C 0 C 0 s danRer6.chr20 49317266 41 + 51884995 ---------------TTATAC-AGCTATCGGG-------ATATA-------GATTATTATACAGCTATC------GG- i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 2080 56 + 7996 tgatgttgcgtgtggtgatgt-agcgtgtggt-------gagct-------aatgatgatgtagcgtgt------gg- i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 766880 0 + 155361357 C a score=-42915.000000 s hg19.chrUn_gl000239 13130 76 + 33824 TG---GGTGG------ACCATGCTGGAGCTTCTGGTGGGTG---GACCAT--GGTGGAGCTTCTGGTGGGTA---AATTATGCTGGAGCTTCT--------------- s panTro2.chrX 766880 76 + 155361357 TG---GGTAA------ATCATGCTGGAGCTTCTGGTGGGTA---AACCAT--GCTGGAGCTTCTGGTGGGTG---GACTATGGTGGAGCTTCT--------------- i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15314 76 + 32581 TG---GGTGG------ACCATGTTGGAGCCTCTGGTGGGTG---GATCAT--GCTGAAGCTTCTGGTGGGTA---AATCATGCTGAAGCTTCT--------------- i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267333 76 + 48394510 TG---GGTGG------ACCATGCTGGAGCTTCTGGTAGGTG---GACCAT--GGTGGAGTTTCTGGGGTGTA---AATTATGCTGGAGCTTCT--------------- i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_333 638475 68 - 1332337 TC---CGTCA------ACAAAGCTGGTCCTTCTGGT----------CCATCAGCTAAAG---CTGGTCCTTC---AACAAAGCTGGTTCTTCT--------------- i xenTro2.scaffold_333 C 0 N 0 s fr2.chrUn 379683738 76 + 400509343 TG---AGGTT------CTGGTGTGAGGATCTAGTGTGAGGA---TCTGGT--GTGAGGATCTAGTGTGAGGT---TCCGGTGTGAGGATCTTG--------------- i fr2.chrUn C 0 C 0 s gasAcu1.chrXIX 1554705 76 + 20240660 TG---GGACTGAC---CTGACGTAGGGGCT---GGTGGGACTGACCTGAC--GTAGTGGCT---GGTGGGACTGACCTGACGTAGTAGCT------------------ i gasAcu1.chrXIX C 0 C 0 s oryLat2.scaffold2468 1268 76 + 14302 TG---AGCCT------TTCAGGTGAGGCCTTCAGGTGAGGC---CCTTAG--GTGAGGCCCTCAGGTGAGGC---CCTTAGGTGAGTCCTTCA--------------- i oryLat2.scaffold2468 C 0 C 0 s danRer6.chr20 49317307 85 + 51884995 TATATAGATTATTATACAGCTATCGGGATatagattattat---acagat--atgggtatatagattattat---acagatatgggtatatag--------------- i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 2136 80 + 7996 --------------------tgatgtagcgtgtggCGAGCT---AATGAT--GATGTAGCGCGTAGTgagct---aatgatgatgttgcgtgtagtgatgtagcgtgt i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-70843.000000 s hg19.chrUn_gl000239 13206 127 + 33824 GGTGAGTAAA---TCATGCTGGAACCTCT---------------GGTGGGTA---AATCATGCTGGAGCTTCTGGTGGGTAA---ATTATGTTGGAGCCTCTGGTGGGTAAAT---CATGCTGAAGCTTCT---GGTGGGTA-A--------------A--TCATGCTAGAGCC s panTro2.chrX 766956 127 + 155361357 GGTGGATGGA---CCATGCTGGAGCTTCT---------------GGTGAGTA---GACCATGGTGGAGCTTCTGGGGGGTAA---ATTATGCTGGAGCTTCTGGTGGGTGGAG---CATAGTGGAGCTTCT---GATGGGTG-G--------------A--CCATGCTGGAGTT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15390 126 + 32581 GGTGGGTAAA---TCATGCTGGAACCTCT---------------GGTGGGTA---AATCATGCTGGAGCTTCTGGTGGGTAA---ATTATGTTGGAGCC-CTGGTGGGTAAAT---CTTGCTGAAGCCTCT---GGTGGGTA-A--------------A--TCATGCTAGAGCC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267409 127 + 48394510 GGTGGGTGGA---CCATAGTGGAGCTTCT---------------GGTGGGTA---AATTATGCTGGAGCTTCTGGTGGGTGG---ATCATGGTGGAGCTTCTGGTGGGTGGAC---CATGCTGGAGCTTCT---GGTGGGTG-G--------------A--CCATGTTGGAGCT i ponAbe2.chr21 C 0 I 78 s xenTro2.scaffold_281 94195 129 - 1487587 GAAGGCCAGA---TCTCAGACAAATGCTT---------------GGGGTACG---GCCAATGCTGGGGATAGTGAAGGCCAG---ATCTCAGTTTAAGGCTTGGGGTATGGCC---AATGCTGGGGTTAGG---GAAGGCCA-G--------------ATCTCAGTCTAAGGCC i xenTro2.scaffold_281 N 0 C 0 s fr2.chrUn 379683814 98 + 400509343 --TGTGAGGA---TCTGTTGTGAGGGTCTAG-------------TGTGAGGT---TCCGGTGTGAGGATCTGTTGTGAGGGT---CTGGTGTGAGGATCTGTTGTG---AAGA---TCT---------------GGTGTGAA-G------------------------------ i fr2.chrUn C 0 C 0 s gasAcu1.chrXIX 1554781 114 + 20240660 --GGTGGGACTGACCTGACGT-AGTGGCT---------------GGTGGGACTGACCTGACGTAGTAGC---TGGTGGGACTGACCTGACGTAGTGGCT---GGTG---GGACTGACCTGACGTAGTGGCT---GGTGGGACTG------------------------------ i gasAcu1.chrXIX C 0 C 0 s oryLat2.scaffold2468 1344 112 + 14302 --GGTGAGGC---CCTTAGGTGAGTCCCTTA-------------GGTGAGGC---CCTCAGGTGAGGCCCTTTGGTGAGCCT---CTCAGGTGAGGCCTTCAGGTG---AGGC---CCTTAGGTAAGTCCTTCAGGTGAGGC-------------------------------- i oryLat2.scaffold2468 C 0 C 0 s danRer6.chr20 49317392 118 + 51884995 --attattat---acagatatgggtatat-------------------agat---tattatacagatatcggtatatagatt---attatatagatatc---ggtatatagat---tattatacagctatc---ggtatata-gattattatacagct---------------- i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 2216 116 + 7996 ggtgagctaa---tgatgatgtagcgtgtggtgatgtagcgtgtggtgagct---aatgatgatgtagcgtgtggtgagcta---atgatgatgtagcgtgtggtgaggtaat---gatgatgtaggg---------------------------------------------- i petMar1.Contig35034 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-4635.000000 s hg19.chrUn_gl000239 13333 25 + 33824 TCTGGTGGGTAAATCATGCTGGAGC s panTro2.chrX 767083 25 + 155361357 TTTGGTGGGTGGACCATGGTGGAGC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15516 25 + 32581 TCTGGTGGGTAAATCATGCTGGAGC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267614 25 + 48394510 TCTGGTGGGTGGATCATGGTGGAGC i ponAbe2.chr21 I 78 C 0 s xenTro2.scaffold_281 94324 23 - 1487587 --TGGGGTACGGCCAATGCTGGGGT i xenTro2.scaffold_281 C 0 C 0 s fr2.chrUn 379683912 15 + 400509343 ----------ATCTGGTTTGAGGGT i fr2.chrUn C 0 C 0 s gasAcu1.chrXIX 1554895 15 + 20240660 ----------ACCTGACGTAGTAGC i gasAcu1.chrXIX C 0 C 0 s oryLat2.scaffold2468 1456 14 + 14302 -----------CTTCAGGTGAGGCC i oryLat2.scaffold2468 C 0 C 0 s danRer6.chr20 49317510 21 + 51884995 ----atctgtatatagattattata i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 2332 25 + 7996 tgtggtgagctaatgatgatgttgc i petMar1.Contig35034 C 0 I 138 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-13436.000000 s hg19.chrUn_gl000239 13358 36 + 33824 CTCTGGTGGGTA---AATC--------------------------ATGCT------GGAGC--------------------CTCTGGTGGG s panTro2.chrX 767108 36 + 155361357 TTCTGATGGGTG---GACC--------------------------ATGCT------GGAGC--------------------TTCTGGTGGG i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15541 36 + 32581 CTCTGGTGGGTA---AATC--------------------------ATGCT------GGAGC--------------------CTCTGGTGGG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267639 36 + 48394510 TTCTGGTGGGTG---GGCC--------------------------ATGCT------GGAAC--------------------TTCTGGTGGG i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_281 94347 62 - 1487587 TAGTGAAGGCCA---GATCTCAGACTAAGGCTTGGGGTATGGCCAATGCT------GGGGT--------------------TAGGGAAGGC i xenTro2.scaffold_281 C 0 C 0 s fr2.chrUn 379683927 34 + 400509343 CTGGTGTGAGGA---TCTG--------------------------GTGTG------AGG----------------------TTCCGGTGTG i fr2.chrUn C 0 N 0 s gasAcu1.chrXIX 1554910 56 + 20240660 T---GGTGGGACTGACCTG--------------------------ACGTA------GGGGCTGGCAGCAGCCAGGATGTTCTTCTGGACAG i gasAcu1.chrXIX C 0 I 65 s oryLat2.scaffold2468 1470 36 + 14302 CTTAGGTGAGGC---CCTC--------------------------AGGTG------AGGCC--------------------CTTTGGTGAG i oryLat2.scaffold2468 C 0 N 0 s danRer6.chr20 49317531 40 + 51884995 cagatatgggta---tata--------------------------GATTATTATACAGA----------------------TATCGGTATA i danRer6.chr20 C 0 C 0 s petMar1.Contig35034 2495 36 + 7996 GTGTGGTGAGCT---AATG--------------------------ATGAC------GTAGC--------------------ATGTGGTGAG i petMar1.Contig35034 I 138 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=-6201.000000 s hg19.chrUn_gl000239 13394 49 + 33824 TAAATC--------------------------ATGCTGGAGCCTCTGGTGGGTGGGG--TATCCACACACCTGTGG-G s panTro2.chrX 767144 49 + 155361357 TAAATC--------------------------ATTCTGGAGCCTCTGGTGGGTGGGG--TATCCACATACCTGTGG-A i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15577 49 + 32581 TAAATC--------------------------ATGCTGGAGCCTCTGGTGGGTGGGG--TATCCACACACCTGCTG-G i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267675 49 + 48394510 TAAATC--------------------------ATGCTGGAGCCTCTGGTGGGTGGGG--TATCCACACACCTATGG-G i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_281 94409 78 - 1487587 CAGATCTCAGTCTAAGGCTCAGGGTATGGCCAATGCTGGGGTTAGTGAAGGCCAGAACTCAGTTAAAGGCTTGGGGTA i xenTro2.scaffold_281 C 0 C 0 s gasAcu1.chrXIX 1555031 47 + 20240660 AGGACC--------------------------CGGAGGAGTTTCTGGGCGTGT-TGC--GGGTCCGAAACCCTCGA-- i gasAcu1.chrXIX I 65 I 9 s danRer6.chr20 49317571 48 + 51884995 TAGATT--------------------------ATTATACAGTTATCGGTATATATAT--TATTATAAATCTATCGG-- i danRer6.chr20 C 0 N 0 s petMar1.Contig35034 2531 24 + 7996 CTAATG--------------------------ATGATGTAGCGTGTGGTG---------------------------- i petMar1.Contig35034 C 0 N 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=26379.000000 s hg19.chrUn_gl000239 13443 75 + 33824 TGCCCATTGATAGTGGGGACTTCACCCCATGTCCCAGAATCCTGCAA--------GGAGGCCACACGCCCCATACATTCTTTA s panTro2.chrX 767193 83 + 155361357 TGCCCATAGATAGCGGGGACTTCACCCCATGTTCCAGAAACCTGCAAAGAGGCAAGGAGGCCACGCGCCCCATACATTCTTTC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15626 75 + 32581 TGCCCATTGATAGTGGGGACTTCACCCCATGTCCCAGAATCCTGCAA--------GGAGGCCACACACTCCATACATTCTTTC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267724 75 + 48394510 TGCCCATTGATAGTGGGGACTTCACCCCATGTTCCAGAAACCTGCAA--------GGAGGCCACGTGCCCCGTACATTCTTTC i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_281 94487 64 - 1487587 CGGCCAATGCTGG-GGTTAGTGAAGGCCAGATCTCAGACAAAGGCTT--------GGGG----TACGGCCAATGC------TG i xenTro2.scaffold_281 C 0 C 0 s gasAcu1.chrXIX 1555087 59 + 20240660 TGCCGAAT-----CGGGCATGTCTCC----GTCCCA---CTGTGCAC--------AGAGGACCCGGG----GGACACTCTTCA i gasAcu1.chrXIX I 9 N 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=75357.000000 s hg19.chrUn_gl000239 13518 153 + 33824 CAGTAAGTTAATAC--GTCCACAGC---ACGCTGTGCGTTTCCCCAAAAATGACATTGGCCAATTACACTTTCAAATCACATGCCTTCCTGATGGGCAAAACTGGAAAT-GTGAACACACTTTAATCCTCAGATAATGTAATGGTTTACATCTGGGGCT s panTro2.chrX 767276 153 + 155361357 CGGCGACTTAATAC--GCCCACAGC---ACGCTGTGTGTTTCCCCAAAAATGACATCGGCCAATTACACTTTCAAATCAAATGCCTTCCCGATGGGCGAAACTGGAAAT-GTGAAAACACTTTAATTCTCGGATAATGTAATGGTTTACATCTGGGGCT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 15701 153 + 32581 TGGTAAGTTAATAC--GTCCACAGC---ATGCTGTGCGTTTCCCCAAAAATGACATCGGCCAATTACACTTTCAAATCACATGCCTTCCTGATGGGCAAAACTGGAAAT-GTGAACACACTTTAATCCTCAGATAATGTAATGGTTTACATCTGGGGCT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267799 153 + 48394510 CGGTGACTTAATAC--ATCCACAGC---ACGCTGTGCATTTCCCCAAAAATGACATCAGCCAGTTACACTTTCAAATCAAATGCCTTCCTGATGGGCGAAACTGGAAAT-GTGAAAACACTTTAATTCTCGGATAATGTAATGGTTTGCAGCTGGGGCT i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_281 94551 155 - 1487587 GGGTTAGTGAAGGCCAGATCTCAGTTTAAGGCTTGGGGTACGGCCAATGCTGGGGTTAGGGAAGGCCAGATCTCAGACAAAGGCTTGGGGTACGGCCAATGCTGGGGATAGTGAAGGC----CAGATCTCAGACAAAGGCTTGGGGTACAGCCAATGCT i xenTro2.scaffold_281 C 0 N 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=110160.000000 s hg19.chrUn_gl000239 13671 247 + 33824 CTTCAGGCAGCCCATGGCTGGTTCACGTTGCTCCCTTCCAAGAAATGTTTTGCAGTATGTGTCTTGATTAATAACGATTTAAACATGGAAAATAAATGCTTTCCTCTTAGGCGTCCACCTGTCTATCACCTGGAGTCTGGGAGGATGGCCCTTCTTTTCAACGGCATTCGCCAAGCCAGTCTCCATGAATCA-CTGACAGAATCCTCTAATGGTTTCCTTTTTTGTTATTGTTGTTTAACACTTAAGC s panTro2.chrX 767429 223 + 155361357 CTTCAGGCAGCCCACGGCTCGTTCACGTTGCTCCCTTCCAAGAAATG-TTTGCAGTATGTGTCTTGTTTAATAACGATTTAAACACGTAAAATAAATGCTTTCCTCTTAGGCGTCCACCTGTCTATCACCCAGAGTCTGGGAGGACGGCCCTTCTTTTCAATGGCATTCTCCAAGCCAGTCTCCATGAATCATTTGACAAAAACCTCTAACGGTTTCCTTTTTT------------------------ i panTro2.chrX C 0 I 902 s gorGor1.Supercontig_0000485 15854 247 + 32581 CTTCAGGCAGCCCATGGCTGATTCACGTTGCTCCCTTCCAAGAAATGTTTTGCAGTATGTATCTTGTTTAATAACGATTTAAACATGGAAAATAAATGCTTTCCTCTTAGGNGTCCCCCTGTCTATCACCCGGAGTCTGGGAGGGCGGCCCTTCTTTTCAACGGCATTCGCCAAGCCAGTCTCCATGAATCA-CTGACAGAATCCTCTAATGGTTTCCTTTTTTGTTGTTGTTGTTTAACACTTAAGC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13267952 245 + 48394510 CTTCAGGGAGCCCACGACTCGTTCACGTTGCTCCCTTCCAAGAAATG-CTTGCAGTATGTGTCTTATTTAATAACGATTTAAACACGGAAAATAAATGCTTTCCTCTTAGGCGTCCACCTGTCTATCACCCAGAGTCTGCGAGGACGGCCCTTCTTTTCAATGTCATTCGCCAAGCAAGTCTCCGTGAATCA-TTGACAAAATCCTCTAATGGTTTCCTTCTTT-TTTTTTTTTTTTAACACTTAAGC i ponAbe2.chr21 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=4755.000000 s hg19.chrUn_gl000239 13918 66 + 33824 ATTGTTGTTGTTTAACACTTAAGCCttttttttttttttt--ccctgagacggagtcttgctctatca s gorGor1.Supercontig_0000485 16101 68 + 32581 NTTGTTGTTGTTTAACACTTAAGCttttttttttttttttncccccaanaaggagtcttgctctatca i gorGor1.Supercontig_0000485 C 0 C 0 e ponAbe2.chr21 13268197 0 + 48394510 C e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 767652 902 + 155361357 I a score=64206.000000 s hg19.chrUn_gl000239 13984 262 + 33824 cccaggctgcagtgcagtagtgcgatctcggctcactgcaacatccgccccccgggttcacaccattttcctgtctcagcctcccgagtagctgggactacaggcacccgccaccatgcccggctaatttttt-gtatttttagtagagatggagtttcaccatgttagccaggatagtctcgatctcctgacctcgtgatccaccagcctctgcctcccaaagtgctgggatgacaggcatgagccactgtgcccagccTTT s gorGor1.Supercontig_0000485 16169 262 + 32581 cccaggctggagtgcagtagtgcgatctcggctcactgcaacatccgccccctgggttcacaccattcttctgcctcagcctcccaagtagctgggactacaggcacccaccaccacgcccggctaatttttt-gtatttttagtagagatggagtttcaccgtgttagctaggatagtctcaatctcctgacctcgtgatccacccgcctctgcctcccaaagtgctgggatgacaggcgtgagccactgcgcccggccttt i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 768554 263 + 155361357 cccaggctggagtgcagtggtgtgatctgggctcactgcaaactccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccacacccggctcatttttttgtatttttagtagagacggggtttcacgctgttagccaggatggtcttgatctcgtgacctcgtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggctttt i panTro2.chrX I 902 C 0 e ponAbe2.chr21 13268197 0 + 48394510 C e rheMac2.chr3 158248006 19906 - 196418989 I a score=168293.000000 s hg19.chrUn_gl000239 14246 350 + 33824 TTTTTTTTTTTTTT------AGAACAGTCCATTTGTCCCTGGAAAGCTGCATATATATTTGTATATAATAATGTTGGAATttcatttatttatttatttat-------tttttgagacaaaatctcactcttgtcgaccaggctggagtgcagtggtgtgatctcggctcacggcaacctccatctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggttgacaggcatctgcaacaacgcccggataatttttttgtatctttttttcagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaa s ponAbe2.chr21 13268197 345 + 48394510 TTTTTTTTTTTTTT------AGAACAGTTCATTTGTCCCTAGAAAGCTGCATATATATTTGTACATAATAATGTTGGAATttcatttatttatttatttat-------tttttgagaccaaatctcgcccttgtcgcccaggctggagtgcagtggttagatctcggctcacggcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggttgacaggcacctgccaccacacccggataattttttt-----ttttttttagtagagatggagtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctcccaa i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 16431 355 + 32581 tttttttttttttt-tttttAGAACAGTCCATTTGTCCCTGGAAAGCTGCATATATATTTGTATATAATAATGTTGGAATttcatttatttatttatttat-------tttttgaggcaaaatctcactcttgtcgaccaggctggagtgcagtggtgtgatctcggctcacggcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggttgacaggcatctgcaacaacgcctggataatttttttgtatctttttttcagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaa i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 768817 361 + 155361357 ttttttttttttttttttttAGAACAGTCCATTTGTCCCTGGAAAGCTGCATATATATTTGTATATAATAATGCTGGAatttcatttatttatttatttatttatttatttttgagacaaaatcttgctcttgtctcccaggctggagtgcagtggtgtgatcttggctcactgctacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctggatgcacaggcacctgccaccacgcccggctaa-ttttttgtat-ttttttttaatagatatggggtttcaccgtgttagccaggatagtctcaatctcctgacctcatgatccacccgcctcggcctcccaa i panTro2.chrX C 0 T 407 e rheMac2.chr3 158248006 19906 - 196418989 I a score=86871.000000 s hg19.chrUn_gl000239 14596 190 + 33824 cccaaagtgctgggattacaggcatcacccaccgtgGGGGCC------------TTTTTTTTTTTTAGAACAGTCCATTTGTCCTTGGAAAGCTGCATATATATTTGTATATAATAAT-TTGGAATttcatttatttatttatttat-------tttttgagacaaaatctctctcttgttgcccaggctggagtacagtggtgtgatct s panTro2.chrX 768771 210 + 155361357 cccaaagtgctgggatgacaggcgtgagccaccgcgcccggcttttttttttttttttttttttttAGAACAGTCCATTTGTCCCTGGAAAGCTGCATATATATTTGTATATAATAATGCTGGAatttcatttatttatttatttatttatttatttttgagacaaaatcttgctcttgtctcccaggctggagtgcagtggtgtgatct i panTro2.chrX T 407 I 2064 s gorGor1.Supercontig_0000485 16786 191 + 32581 cccaaagtgctgggattacaggcatcacccaccgtgGTGGCC-----------TTTTTTTTTTTTTAGAACAGTCCATTTGTCCTTGGAAAGCTGCATATATATTTGTATATAATAAT-TTGGAATttcatttatttatttatttat-------tttttgagacaaaatctctctcttgtcacccaggctggagtacagtggtgtgatct i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13268542 192 + 48394510 -----agtgctgagattacaggcatgagccaccgcgcacggc------cTTTTTTTTTTTTTTTTTAGAACAGTCTATTTGTCCCTGGAAAGCTGCATATATATTTGTATATAATAATGTTGGAATttcatttatttatttatttat-------tttttgagaccaaatctcgctcttgtcgcccaggctggagtgcagtggtgtgatct i ponAbe2.chr21 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=46442.000000 s hg19.chrUn_gl000239 14786 187 + 33824 ---------------cccgcctcccgggttcaagcgattctcctgcctcggtctcctgagtagGaggtgtgttacatgggaatattgtgtgatgttcgggtttggggtacaagtgatcccctcaccctgatactgagcatagtaaccaggaggttgccctgccctgccctgccttgcctttcttttcttttcttttTTTTTT s gorGor1.Supercontig_0000485 16977 187 + 32581 ---------------cccgcctcacgggttcaagcgattctcctgcctcggtctcctgagtagGaggtttgttacatgggaatattgtgtgatgttcgggtttggggtacaagtgatcccctcaccctgatactgagcatagtaaccaggaggttgccctgccctgccctgccttgcctttcttttctttncttttctTTTT i gorGor1.Supercontig_0000485 C 0 I 14 s ponAbe2.chr21 13268734 198 + 48394510 cggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtaacaggttggttacatgggaatattgtgtgatgctcaggtttggggtacaagtgatcccctcaccctgatactgagcatagtaaccaggaggttgccctgccctgccttgccttgcctttcttttctttcctttttt---- i ponAbe2.chr21 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I a score=58659.000000 s hg19.chrUn_gl000239 14973 734 + 33824 CTTTTTTGTTTTCTTTCTTTCttcttcttcttttttgttttttttttttgagacagactctcactttgttgcccaggctggagttcagtggtggaatctcagctcactgcaacctccggctcccgggttcaagcaatcctcacccctcagcttcccaagtagctgggattacaggtgtgcaccagcacacctagctaatttaaaaaaaaaaatt-gtaaagatgacgtcttgccatgttgccggtctcaagctcttgcgctcaaaccttccacctgctacagcctcttaaagtgctgggattacaggtgtgagccacctcacccagccAAACACGCCAGACACTTTGCATTTGCTCAATAAGGCTTCGTGGCTATTTGaggttttcaaccctagcctccctcccttcctccctccctccctctcttctgctagtcccccagcttctgttgttcccatgtttatatccacgtatatccaacacttagctcccacttataagttgagaacatgcaggatttgtttctgtgttcctgtgataatgatcttagg-ataatattccccagctgcatccaggttgccacaaaggacgtgatttctttcttccttatagcgtattccatggCAAAGCTACATATTTCAAAGTACTTCAGTGATGTAATTCACACCAATACATCAATAACGAGATAAATAAATAACCTAAGGCATTTTTTTCAGTGTTTGCCGTCGGAGTAATG s ponAbe2.chr21 13268932 723 + 48394510 -------gtTTTCTTCCtttcttcttcttcttcttt-----ttttttttgagacagactgtcactttgttgcccaggctggagtgcaatggtgcaatctcagctcaccgcaacctccgcctcccaggttcaagcaatcctcacccctcagcttcccaagtagctgggattacaggtgtgcaccagcacatctagctaatttaaaaaaaaaaatttgtaaagatgacgtcttgccatgttgctggtctcaagctcttgggctcaaaccatccacctgctacagcctcttaaagtgctgggattacaggtgtgagccacctcacctggccAAACACACCAGACACTTTGGATTTGCTCAATAAAGCTTTGTGGCTATTTGaggttttcaatcctagcctccctcccttcctccctccctccctctcttctgctaatcccc-agtttgtgttgttcccgtgtttatatccacgtatacccaacgcttagctcccacttacaagttgagaacacgcaggatttgttcttctgttgctgtgataattatcttagggataatattccccagccacatccaggttgctgcaaaggacacgatttctttctttcttattgcatgttccatggCAAAGCTACGTATTTCAAAGTATTTCAGTGATATAATTCACACCAATACGTCAATAACGAGATAAATAAATAACCTAAGGCATTTTTTTCGGTGTTTGCTGTGGCAGTAATG i ponAbe2.chr21 C 0 I 818 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 17164 14 + 32581 I a score=0.000000 s hg19.chrUn_gl000239 15707 298 + 33824 AGCGCACCCAATCTGATTGTAATTTTTCTCTCCCAGTTTGCTGAGCAGAGAGGCCCAGCTTTTTCCAATGTGACTTGGGGCAAATTCACCTGGCTGGTCAGCTCAAGAGACAGAGATTAAGCCGCACTACAGCCAGGTACTGTTTCCAAGAAACTCAAGACTCCTTCCTCTGGCCCTGTGCACAGAGACAGCTGAGGATAAGACACCACCTTTACTTTAAGGGCACAAGACACGTAGAAATGAACAGGTAGCATTCCGTGGGAAGAAATATCCTCAGGACgtgtgtgtgtgtgtgtat e ponAbe2.chr21 13269655 818 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 17164 14 + 32581 I a score=382.000000 s hg19.chrUn_gl000239 16005 4 + 33824 gtgt e ponAbe2.chr21 13269655 818 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 17164 14 + 32581 I a score=0.000000 s hg19.chrUn_gl000239 16009 439 + 33824 ctaagtctcctgtgtgtgtatgcgtgtgtgtgtgtgtgtgtCTAagtcttgctctgtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcatgggttcaagcgattctcctgcctcagcctcccgaggagctggattgacaggcacctgccaccacacctggctaattttttgtatttttttaatagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctctgcctcccaaagtgctgggatgacaggcgtgagccactggtgcctggccTATTTATTTATTTTTGAGCCACTGGCGCCTGGCCTAtttatttattcttgagacagagtcttgctctctcgcctaggctggagttcagtggagcgatctcggctcagtgcaacctccg e ponAbe2.chr21 13269655 818 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 17164 14 + 32581 I a score=122240.000000 s hg19.chrUn_gl000239 16448 1373 + 33824 cctcctgggttcaagcgattctcctgcctcagcctcccaagtagccgggattacaggcgtccaccaccacacccggctaatttttatatttttcgtagagaaggggtttcaccatgttggccaggctggtctcgaactcatgacctcaggtgatctgcccTCAGGGTACCCTCTGGACTTTTAAATAGCAGAATCCCCCTCAAAGAGCACCAGCCACTGTCTCTATAACTGGCCCACAGGGTCTCTTTGGGATGATTTTAAAACCCAGCAAAACGAAGggccgggcgaggtagctcatgcctgtaatcccagcactttgagagcccaaggcgggtggatcatcggaggtcaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagcctggcgtggtggtgggcgcctgtgaccccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggc------------gagcccagatcgcaccgttgcagtccagcctggtgacagcaaggcttcatctcaaaagataaaTAAGTGAAGaaataaataaatgtaaaataaaataaaataaaataaaaAACAGTaaaggagtgaagctctgagacaggctacaatgtttatgaatctgaaaagatagcattctgtgaaaaaaaggcaagccccaaaaaaaccacagattgggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacttgaggtcagtagttcgagaacagcctggccaacatggggaaacttcatctctattaaaaatacaaaaattagcctggcgtggtggctggtgcccgtcaacccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcactgagccaagatcgtgccactgcactccagcctgggtgagagagagcaagactccatctcaaaaataaataaaTAggccgggtgcagtggctcacacctgtaatcccagcactttgggagtccgaggtgggtgtatcacgaggtcaggagatcaagaccggcctggccaacatggtgaaaccccatctctactaaaaaaacaaatacaaaatattagccgggcatggtggcaggtgcctgtcaacccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcggagcttgcactgagccgagatcgtgccactgcactccagcctgggcgagaaagtgagactccgtctcaaaaaTGAATAAATAggccaggcatggtggctcactcctgtaatcccagcactttgggaggccgaggcagatggatcacaagt s gorGor1.Supercontig_0000485 17178 1376 + 32581 cctcctgggttnaagngattctcctgcctcagcctcccgagtagccgggatgacaggcgtccaccaccacgcccggctaatttttatatttttcgtagagaaggggtttcaccatgttggccaggctggtctcgaactcatgacctcangtgatctgcccTCAGGGTACCCTCTGGACTTTTAAATAGCAGAATCNCCCTCAAAAAGCACCAGCCACTGTCTCTATAACTGGCCCACAGGGTCTCTTTGGGATGATTTTAAAACCCAGCACAACGAAGggccgggcnaggtagctcacacctgtaatcccagcactttgagagcccaaggcgggtggatcatctgaggtcaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagcctggcgtggtggtgggcgcctgtgaccccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagcccagatcgcaccattgcagtccagcctggtgacagcaaggcttcatctcaaaagataaaTAAGTGAAGaaataaataaatataaaataaaataaaat------aaaaACAGTaaaggagtgaagctctgagacaggctacaatgttcatgaatctgaaaagatagcattctgtg-aaaaaaggcaagccccaaaaaaaccacagattgggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtaggcagatcacttgaggtcagtagttcgagaacagcctggccaacatggggaaccttcgtctctattaaaaatacaaaaattagcctggcgtggtggctggtgcccatcaacccagctactcgggagactgaggcaggagaatcacttgaacccgggaggtggaggttgcactgagccgagatcgtgccagtgcactccagcctgggt--gagagagcaagactccatctcaaaaataaataaaTAggccgggtgcagtggctcacacctgtaatcccagcactttgggagtccgaggtgggtgtatcacgaggtcaggagatcaagaccggcctggccaacatggtgaaaccccatctctactaaaaaaacaaatacaaaatattagccaggcgtggtggcaggtgnctgtcaacccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagagcttgcactgagccgagatcgtgccactgcactccagcctgggtgagaaagtgagactccgtctcaaaaaTGAATAAATAggccaggcatggtggctcacgcctgtcatcccagcactttgggagcctgaggcagatggatcacgagg i gorGor1.Supercontig_0000485 I 14 C 0 e ponAbe2.chr21 13269655 818 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I a score=32274.000000 s hg19.chrUn_gl000239 17821 153 + 33824 tcaggagatcgagaccatcctggctaacatggtgaaaccccatctccactaaaaaaaaaaatacaaaaaattagcttggtgtggtggcacgtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcttgaacctgggaggtgg s gorGor1.Supercontig_0000485 18554 152 + 32581 tcaggagatcgagaccaacctggctaacatggtgaaaccccatctccact-aaaaaaaaaatacaaaaaattagctgggcatggtggccngtgcctgtcaacccagctactcgggaggctgaggcaggagaatggcttgaacctgggaggtgg i gorGor1.Supercontig_0000485 C 0 M 1515 s ponAbe2.chr21 13270473 146 + 48394510 tcaggagttcgagagcagcctgaccaacatggtgaaaccccgcctctact------aaaaatac-aaaaattagccaggcgtggtggcaggcgcctgtaatcccagctactcgggaggctgaggcgggagaatcgcttgaacccgggaggcgg i ponAbe2.chr21 I 818 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I a score=5892.000000 s hg19.chrUn_gl000239 17974 83 + 33824 aggttgcagtgagccgagatcgcgtcactgcactacagcctgggcaagagaatgagtctctgtctcaaaaataaataaataac s ponAbe2.chr21 13270619 83 + 48394510 aggttgcggtgagtcaagattgtgccactgcactccagcctgggcgagacagtgagactgcgtctcaaaaataaataaataac i ponAbe2.chr21 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=3753.000000 s hg19.chrUn_gl000239 18057 52 + 33824 aataaaTAATTAATAAACACAGTGGAGATGCTCCAAACCCGCCAAGACTAGG s ponAbe2.chr21 13270702 52 + 48394510 aataaaaaataaaTAAACACAGCGGAGATGCCACAAGCCCACCAAGACTACG i ponAbe2.chr21 C 0 C 0 s xenTro2.scaffold_253 1318221 52 - 1652810 AATTAATTATTTGTTTTTAGAGTAATGGAACTCTAAGTCCTTTAAAATAATT i xenTro2.scaffold_253 N 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=89599.000000 s hg19.chrUn_gl000239 18109 330 + 33824 CTGTTCCTCCTCGGGGAACACGTGGGCAGATGCTGAACCG-GGAAGGCCCCAAGACGTTGCAGGGTGAGTAATTTCCGAGCATGCAATTATAAAGAACCGGAGTGCAACAGCTCCCCAAGGCACCCCCGGATTC-CCGCAGCGTGCACGTAATTGCAGCCAGA--CAGTAACCTCGCTGTGGCCTGTGTCCCAGCCCTAACCCTGCACCC-CACTTG-GC-------------ACTCCCACATATGGGACAATTTTC-CCAGCTGATTGCTGGAAACTGA-TGAAGGGAAGTTATG---------------TGGCCTCTTGTGATGGGCGGTCCCACAGCTGCTCTGGTTGgagagagagagagag s xenTro2.scaffold_253 1318273 319 - 1652810 TTGGTGCCTAT-----AACATATTTGTAAA---TAATTTA-GCAGCACCCCCAACAATCTCCTTGTGAGTCATTTCCGAGCGCGCAATTATTCTGGGCTGAAGTGGAACAGCTCCCTGAAGCATCATCACAATTTCTGCAGTGAACATTTAATTGTAGCCAGACTTTGTAGCCTTAATATGGCCTGTGTCCTTGCCATAACCTGGGGTCTGAACTCCAGT-------------CTTTTAACATATGGGAAAATTTTTGCAAAATGATTGCTGCAATCTGATTTACGGGAAATTATGGATCAGAC-------AGTCATGTCACTAC-----GTTCAACAGCTGCTTTGCGAGGA------------- i xenTro2.scaffold_253 C 0 N 0 s macEug1.Scaffold10482 1166 325 + 35560 CTTCtttttttCTAGGAACATATGTTTG-----TAAACCATGGAACAGCCTGAGTAATTTCAGAGCGAGTCATTTCCGAAAGTACAATTACAAATGAGTAAAGTGCAATAGCTCCCCAAAGTATCGTCACAGTCTCTGCAGCGCGTGTTTAATTGTAGCCAGACTCTGTAACCTTCAAGTGGCCTGTGTCCTTGCCATAACCCTAGGCCCAAGCTCC-CC-------------TCTCCAACATATGGGAAAGTTTTT-CGAACTGATTGCTCCAATCTGA-TTAAGGGAAGTTATGGAGCTGCCATGTATTCAGCATCTTGTTAC-CACACTCTAACAGCTGCTTTA------------------- i macEug1.Scaffold10482 N 0 C 0 s ponAbe2.chr21 13270754 330 + 48394510 CCGTTCCTCCTCGGGGAACACATGGGCAGAGGCTGAACCG-GGAAGGCCCCCAGCCATTGCCGGGTGAGTAATTTCCGAGCGTGCAATTATAAAGAACCGGAGTGCAACAGCTCCCCAAGGCACCCCCGGATTC-CCGCAGTGTGCCCATAATTGCAGCCAGA--CAGTAACCTCGCTGTGGCCTGTGTCCCAGCCCTAACCCCGCACCC-CGCTTG-GC-------------GCTCCCACATATGGGACAATTTTC-CAAGCTGATTGCTGGAAACTGA-TGAAGGGAAGTTATG---------------TGGCCTCTTGTGACGGGCGGTCCCACAGCTGCTCTGGTCGgaaagagagagagag i ponAbe2.chr21 C 0 I 500 s danRer6.chr9 35081216 335 + 54736511 -----CATCCCAGCCAAACCTGTTTGTAAACGATCAAACA-GAGCCACACTTTGCT-TTTCACTGTCAGTAATTCCTAACTAACTAATTACAAACGACTGGGCTGCAATAGCTCCCTGAAGCGTCGTACCCGTTTCTTCTAAGAGTGGCTAATTGTAGCCAGACATGCTAACCTTGAAGTGGCCTGTGTCCTTGCAGTAACCCTTGGCCCTCGCTCT-CCTTCTCTCCGCTTTCCTGCACCATATGGGAAACTTTTTTCAAGCTGATTGCTCGAATCTGA-TTAAGGAAAGCTATGTAGCTGCCATTTATTGGTATTCTTGTGAA---CTAGCAAACAGCTGCCTTG------------------- i danRer6.chr9 N 0 I 6 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=0.000000 s hg19.chrUn_gl000239 18439 243 + 33824 acagagagacaggggaggggggggagagagtgagagacagggaagagagagagagagagagacagagaggggagagagagagagatggggagagagaggggagagagagagacggggaaagagaggggagagagagagagaaagagaggggaggggggagagaaagagacagaggggagaggggggagagagagagacgggagagagacagaggggggagagagagagacgggagagggaggg e macEug1.Scaffold10482 1491 0 + 35560 C e danRer6.chr9 35081551 6 + 54736511 I e ponAbe2.chr21 13271084 500 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=8387.000000 s hg19.chrUn_gl000239 18682 150 + 33824 gagagagagacgggagagggaggggagagaga---gagacacagagacagagagacaggggagagagagacaggagagagggaggagagagacagagacagggagagag-----agagagacagagagagagagagacaggggagagagagaga--------gggg s ponAbe2.chr21 13271584 164 + 48394510 gagagagagaggggacagtgaggggagagagacaagagacagacagagagagagagaggggagacagagacag-agatggggag-agagagagagagacagagagagaggggggagagagagagacagagagagagacgggggggagagaaagacagagatggggg i ponAbe2.chr21 I 500 C 0 e macEug1.Scaffold10482 1491 0 + 35560 C e danRer6.chr9 35081551 6 + 54736511 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=2062.000000 s hg19.chrUn_gl000239 18832 36 + 33824 agagagagacgggagaggggagagagagagacagag s ponAbe2.chr21 13271748 35 + 48394510 agagagaaa-gacagagaggagagagagagaaaaag i ponAbe2.chr21 C 0 C 0 s ornAna1.Contig18897 507 28 + 16247 GGGAAAAGACGGAGGGGCAGAGGCagag-------- i ornAna1.Contig18897 N 0 I 42 e macEug1.Scaffold10482 1491 0 + 35560 C e danRer6.chr9 35081551 6 + 54736511 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 768981 2064 + 155361357 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=7382.000000 s hg19.chrUn_gl000239 18868 39 + 33824 --gagagagagcggagagag--agagacagg-ggagagagaggg s ponAbe2.chr21 13271783 44 + 48394510 gagagagagaggggagagagacagagacagacagagagagggga i ponAbe2.chr21 C 0 I 6 s panTro2.chrX 771045 39 + 155361357 --gagagaaaggggagagag--agagacaga-ggagagagagag i panTro2.chrX I 2064 C 0 e ornAna1.Contig18897 535 42 + 16247 I e macEug1.Scaffold10482 1491 0 + 35560 C e danRer6.chr9 35081551 6 + 54736511 I e rheMac2.chr3 158248006 19906 - 196418989 I e gorGor1.Supercontig_0000485 18706 1515 + 32581 M a score=-1487.000000 s hg19.chrUn_gl000239 18907 25 + 33824 -g-ggagaga---gacacagagagagaCAG s ponAbe2.chr21 13271833 26 + 48394510 ----gagagaggggagagagagagagCGAG i ponAbe2.chr21 I 6 C 0 s gorGor1.Supercontig_0000485 20221 23 + 32581 ----GAGAGA---GACACAGAGAGAGACAG i gorGor1.Supercontig_0000485 M 1515 C 0 s macEug1.Scaffold10482 1491 7 + 35560 -----------------------GAAAAGA i macEug1.Scaffold10482 C 0 C 0 s ornAna1.Contig18897 577 24 + 16247 ag---agaga---gagagagagagaATAGT i ornAna1.Contig18897 I 42 N 0 s panTro2.chrX 771084 25 + 155361357 -acagagaga---gacagagagagagaga- i panTro2.chrX C 0 C 0 e danRer6.chr9 35081551 6 + 54736511 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=82703.000000 s hg19.chrUn_gl000239 18932 144 + 33824 CTCTCCTGGAAGATATTTTCTCTCTGTTCCAATTCCAGGGCATCTTTTGGAAGAAAAGGGATGACACTGGTGGTTTTGCGGAAGGTCAGTGCCA---GAGTTGAGGAAGA------TGTCATTTTGGCAACTCATTGTCGAGTTCTCCAAAAA s macEug1.Scaffold10482 1498 142 + 35560 TTCCCATTAAAGCTATTTTCTGCCTACTCCAATTCCAGCTTGTCTGTGGAAGTAAGTGTGATTGCTTGGATGAGTCTGGGGGTGG-AGGTACTAGTGGAGTCAAAGGAAAATTAATTAT-AGTTTGGCAAATAA---------TCTCCAAAAG i macEug1.Scaffold10482 C 0 C 0 s panTro2.chrX 771109 147 + 155361357 ---CCCTGGAAGTTATTTTCTCTGTGCTCCAATTCCAGGGCATATTTTGGAAGAAAAGGGATCATGCTGGTGGTTTTGCGGAAGGTCGGTGCCA---GAGTTGAGGAAGAGGAAGATGTCACTTTGGCAACTCATTGTCAAGTTCTCCAAAAA i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 20244 144 + 32581 CTCTCCTGGAAGATATTTTCTCTCTGCTTCAATTCCAGGGCATCTTTTGGAAGAAAAGGGATGACACTGGTGGTTTTGCGGAAGGTCAGTGCCA---GAGTTGAGGAAGA------TGTCATTTTGGCAACTCATTGTCGAGTTCTCCAAAAA i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13271859 150 + 48394510 CTCACCGGGAAGATATTTTCTCTCTGCTCCAATTCCAGGTCATCTTTTGGAAGAAAAGGGATCACGCTGGTGGTTTTGCGGAAGGTCGGTGCCA---GAGCTGAGGAAGAGGAAGACGTCACTTTGGCAACTCATTGTGGAGTTCCCCAAAAA i ponAbe2.chr21 C 0 C 0 s danRer6.chr9 35081557 149 + 54736511 TTCCCATTTAGGAGGTTTTCTGCCTGTTCTAATTCCAGCACGTCCATTAGCCTCACTCAGATAACAACGATCGGGC-ACGGCGTGCCAGCGCTG---GCCTCCAAATCAAAAACACTGGCACTGGGACAACTCTTTCTTGGAGGGTCCAAAAA i danRer6.chr9 I 6 N 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=82634.000000 s hg19.chrUn_gl000239 19076 151 + 33824 TCAGGGAGGTGGGGAGCTGGAGTCAGGGAGGGAGGAGAGGAGGAAGCACCAGCCACCCACAGTGGGAAGGATCTCTCCTGTCTTCCTCTCCATCTGCCTCACCGT---GACCCCATCCCTTGACTTTGTCTTTGCAGAGGGGCATCCTGCCTTT s macEug1.Scaffold10482 1640 127 + 35560 TGGGAAAGCAGGG----TAAAGtgagataggaaagggaagagaaagca-----gGCTCACAAAGAGAA------------TTTTCCTccccctccatcccattttccagACTGAATTCCTTGG------CATGTCAAGAGGACTTCCTTCCTCT i macEug1.Scaffold10482 C 0 N 0 s panTro2.chrX 771256 151 + 155361357 TCAGGGAGGTGGGGAGCTGGAGTCAGGGAGGGAGGAGAGGAGGAAGCACCAGCCACCCACACAGGGAAGGATCTCTCCTCTCTTCCTCTCCATCTGCCACACCGT---GAGCCCATCCCTTGACTTTGCCTTTGCAGAGGGGCATCCCGCCTTT i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 20388 151 + 32581 TCAGGGAGGTGGGGAGCTGGAGTCAGGGAGGGAGGAGAGGAGGAAGCACCAGCCACCCACAGTGGGAAGGATCTCTCCTGTCTTCCTCTCCATCTGCCTCACCGT---GACCCCATCCCTTGACTTTGTCTTTGCAGAGGGGCATCCTGCCTTT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13272009 150 + 48394510 TCAGGGAGG-GGGGAGCTGGCGTCAGGGACGGAGGAGAGGGGGAAGCACCAGCCACCCCCACAGGGAAGGATCTCTCCTCTCTTCCTCGCCATCTGCCCCACCGT---GACCCCATCCTTTGACTTTGTCTTTGCAGAGGGGCATCCTGCCTTT i ponAbe2.chr21 C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=607364.000000 s hg19.chrUn_gl000239 19227 1267 + 33824 GTCCACAGCTGtttctctctttcttttcttgagagacaatcttgctccgtcacccagactggagtgcaatggagcaatcatagctcactgcaacctcacgctgctggactcaagccatcctcccacatcagcctcccaagtagctgggaccacaggagctt-gccaccatgccctgttaatttttaaacatgttttggagagagggggtctcactatgttgcccagAgcaccaccatgccccattaattaaaaaaaaaaatttgtagagatggggtcttgctatcttgcccaggctggtctcaaacccAGAGCACCACCATGCACCATTAA--TTTTAAAA-GAATTTGCAgagatggggtcttgctatgttgcccaggctggtctcaaactcctgggctcaagcaatcctctcatctcagcctcccaagtggctgggaccacagaaacacaccaccatgtcctattcattaagaaaaaa-atcggggccgggcacagtggctcatg--------------cctgtaatcacagcagtttgggagaccgaggcaggtggatcacggggtcaggagttcgagaccatcttggctaacacggtggaaccccgtctctcctaaaaatacaaacaattagccgggtgtggtggtggacagctgtagtcccagctactggggaggctgaggcaggagaatggcataaacccagaaggtggagcttgcagtgagctgagatcacaccactgccctccagcctgggcgacagagcaagactccgtctcaaaaaaaagaaaaaa--atatttggagagatggggcctcactgtattgcccaggctggtctcaaactcctgggctccagtgatccttctacctTTATTTTATGGAGAGAAATATGCAATTTTTACATAGTGCTTTTGTTTTAAAATGCAGCTTGATCCTCAGACAATGAGAGGCAGGCATTTTACAGAAGAGACATCAGAACTTTCTAGAAGGTGGGTGATTTTTCAGTGA--GTATTCAGAGAATAAGTTGCAAAACAGAGGAAATGGCAACTTCTGAGCCTAAATTCAAGGGTTggccgagcacagtggctcacacctgtcatcccaacactttgggaggccaaggcgggcatatcacctggggtcaggagttcgagacgaggctgaccaacacggtgaaaacctgtctctactaaaaataccaaaattagcaaggcatggtggtgggtgcctgtagtcacagctactcaggaggttaaggcatgagaatcacctgaacctgggagg s ponAbe2.chr21 13272159 1281 + 48394510 GTCCACAGCTGtttctctctctctttttttgagagagaatcttgctctgtcacccagactagagtgcaatggagcaatcatagctcactgcaaccttaagctcctggactcaagccatcctcc--cctcagcctcccaagtagccaggaccacaggagcag-accgccatgccctgttaatttttaaacatgttttggagagatggggtctcactatgttgcccagAgcaccaccatgtcccattaattttaaaaaaaaatgtgtagagatggagtcttgctatgttgcccaggctggcctcaaacccAGAGCACCACCGTGCCTCATTAATTTTTAAAAA-AAATTCGTAgagatggggtcttgctatgttgcccaggctggtctcaaactcctgagctcaagcgatcctcccatcccagcctcccaagtagctgggatcacaggagcag---accatgtcccattcattaaaaaaaaatattggggccggacaaggtggctcacaccagtaatcccagccctgtaatcccagaactttgggaggccgaggcaggtggatcatgaggtcaggagattgagaccagcctggctaacacggtgaaaccccatctctactaaaaatacaaa-aattagctgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggagacggagcttgcagtgagccgagatcgcgcctctgcactccagcctgggcgacagagcga-actccatctcaaaaaaaaagaaaaaggaaatttggagagatggggcctcactatattgcccaggctggtctcaaactcctgggctccagcgatcctcttacctTTATTTTATGCAGAGAAATATGCAATTTTTACATAGTACTTTTGTTTTAAAATGCAGCTTGATCCTCAGACAATGAGAGGCAGGCATTTTACAGAAGAGACATCAGTACTTTCTAGAAGGTGGGTGATTGCTCAGTGAACCTATTCAGAGAATAAGTTGCAAAACCGAGGGAATGGCAACTTCTGAGCCTAAATTCAAGGGTTggccgggcgcagtgactcacgtctgacatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctgaccaacaaggtgaaaacccatctgtactaaaaataccaaaattagccaggcgtggtggtgggtgcctgtcgtcccagctactcaggaggttgaggcatgagaatcacgtgaagctgggagg i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 20539 1267 + 32581 GTCCACAGCTGtttctctctttcttttcttgagagacaatcttgctccgtcacccagactagagtgcaatggagcaatcacagctcactgcaacctcacgctgctggactcaagccatcctcccacctcagcctcccaagtagctgggaccacaggagcgt-gccaccatgccctgttaacttttaaacatgttttggagagagggggtctcactatgttgcccagAGCACCATCATGCCCCATTAATTAAAAAAAAAA-tttgtagagatggggtcttgctatcttgcccaggctggtctcaaacccAGAGCACCACCATGCANCATTAA--TTTAAAAA-TAATTTGCAgagatggggtcnttctatgttgcccaggctggtctcaaactcctgggctcaagcaatcctctcatctcagcctcccaagtagctgggaccacaggaacacaccaccatgtcccattcatcaaaaaaaaaaattggggccgggcacagtgactcacg--------------cctgtaatcacagccatttgggaggccgaggcgggtggatcacggggtcaggagttcgagaccatcttggctaacacggtggaaccccgtctctcctaaaaatacaaacaattagccgggtgtggtggtggacagctgtagtcccagctactggggaggctgaggcaggagaatggcataaacccgggaggtggagcttgcagtgaactgagatcacaccactgccctccagcctgggcaacagagcaagactctgtctcaaaaaaaagaaaaaa--aaatttggagagatggggcctcactgtattgcccaggctggtctcaaactcctgggctccagtganccttctanctTTATTTTATGGAGAGAAATATGCAATTTTTACATAGTGCTTTTGTTTTAAAATGCAGCTTGATCCTCAGACAACGAGAGGCAGGCATTTTACAGAAGAGACATCAGAACTTTCTAGAAGGTGGGTGATTTTTCAGTGA--GTATTCAGAGAATAAGTTGNAAAACAGAGGAAATNGCAACTTCTGAGCCTAAATTCAAGGGTTggccgagcacagtggctcacacctgtcatcccaacactttgggaggccaaggcgggcatatcacctggggtcaggagttcgagacaatgctgaccaacacggtgaaaacctgtctctactaaaaataccaaaattagccaggcatggtggtgggtgcctgtagtcacagctactcaggaggttaaggcatgagaatcacctgaacctgggagg i gorGor1.Supercontig_0000485 C 0 M 212 s panTro2.chrX 771407 1264 + 155361357 GTCCACAGCTGtttctctctctctttttttgagagacaatcttgctttgtcacccagactggagtgcaatggagcaatcatagctcactgcaacctcaagctcctggactcaagccatcctcccgcctcaacctcccaagtagccgggaccacaggagcagagccaccatgccccattaatttttaaacatgttttggagagttggggtctcactatgttgcccagAGTACCACCATGCCCCATTAATTAAAAAAAAAA--ttgtagagatggggtcttgctatgttgcccaggctggtctcaaacccagagccccaccgtgcctcATTAA--TTTAAAAATAAATTTGTAgagatggggtcttgctatgttgcccaggctggtctcaaactcctgggctcaagcgatcctcccatctcagcctcccaagtagctgggaccacagaagcagactaccatgtcccattcattaaaaaaaaatattgggaccagacaaggtggctcacg--------------cctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtggaaccccgtcta--ctaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgcctctgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaataaaa--at--ttggagagatggggcctcactatattgcccaggctggtctcaaactcctgggctccagcgatcctcTTATCTTTATTTTATGGAGAGAAATATGCAATTTCTACGTAGTGCTTTTGTTTTAAAATGCAGCTTGATCCTCAGACCATGAGAGGCAGGCATTTTACAGAAGAGACATGGGAACTTTCTAGAAGGTGGGTGATTGTTCAGTGC--CTCTTCAGAGAATAAGTTGCGAAACCGAGGAAATGGCAACTTCTGAGCCTAAATTCAAGGGTTggccgggcacagtggctcacgcctctcatcccaacactttgggaggccgaggcaggcggatcacctgaggtcaggagttcaagaccagcctgaccaacacggtgaaaacccgtctctactaaaaataccaaaattagccaggcgtggtggtgggcgcctgtaatcccagatactcaggaggttgaggcaggagaatcgcttcaacctgggagg i panTro2.chrX C 0 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I a score=11675.000000 s hg19.chrUn_gl000239 20494 44 + 33824 cagaggttgcagtgagccgagattgtgccactgcactccagcct s panTro2.chrX 772671 44 + 155361357 tggaggttgcagtgagctgagattgtgccactgcactccagcct i panTro2.chrX C 0 C 0 s ponAbe2.chr21 13273440 44 + 48394510 tggaggttgcagtgagctgagattgtgccactacactccagcct i ponAbe2.chr21 C 0 I 418 e rheMac2.chr3 158248006 19906 - 196418989 I e gorGor1.Supercontig_0000485 21806 212 + 32581 M a score=3709.000000 s hg19.chrUn_gl000239 20538 43 + 33824 gggagacagagtgagactccatctccaaTACATGCATACATAT s panTro2.chrX 772715 43 + 155361357 gggagacagagcgagactccatctcCAatacatacatacatac i panTro2.chrX C 0 C 0 e ponAbe2.chr21 13273484 418 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e gorGor1.Supercontig_0000485 21806 212 + 32581 M a score=34430.000000 s hg19.chrUn_gl000239 20581 145 + 33824 ATACATA------------AAATTAAGAGTTGTTCAGCCATGTTGTCCCCAGTCCCCAAACTCTTAACTTTTTGTGTTTCATAGAAAGTGCTAGGATTTACAAGGATGCCACTACCCTCGGCAGCCCACTAAGATGAAAGTGAGATGCCACCTGTGA s panTro2.chrX 772758 157 + 155361357 atacatacatacatacataAAATTAAGAGTTGTTCAGCCATGCTGTCCCCGGTCCCCAAACTCTTAACCTTTTGCGTTTCATAGAAAGTGCTAGGATTTACAAAGATGCCACTACCCTCGCCAGCCCACTAAGATGAAAGTGAGATGCTGCTTATGA i panTro2.chrX C 0 C 0 s ponAbe2.chr21 13273902 144 + 48394510 atacata------------AAATTAAGAGTTGGTCAGCCATG-TGTCCCCGGTCCCCAAACTCTTAACTTTGTGCGTTTCATAGAAAGTGGTAGGATTTACAAGGATGCCACTACCCTCGCCAGCCCACTAAGATGAAAGTGAGATGCCGCCTGTTA i ponAbe2.chr21 I 418 C 0 e rheMac2.chr3 158248006 19906 - 196418989 I e gorGor1.Supercontig_0000485 21806 212 + 32581 M a score=575692.000000 s hg19.chrUn_gl000239 20726 1219 + 33824 TGGTCATTGGAGCACCTTGCCACCCTCCTCAATGGGCACCGGTGAGGAGGGTGACAGGTGCTCGGAGTTCCTGTGGGTTCTGGGATTCCAAGCTGTCACAGCGATAACCCAGGGTCGATGGTTTCCTGAGGAGTTTGGCAAACCTCAGCCCTTGGATTCATTCCTCAACATTCGTGAAGCAAAACAGACTTTTCAAATCATGTTTAAAACAATTAGCGTGTTTACCCAAACAAAGGTTAAGCCTGCAAAGGAAAAGCATCTGTAAATGCGATCAAGCATTGCAGCTTTTACAGTTTTCCATGAATCCTTCAAAGCTCATCttcttcttctt---ttttttttttttttttttgagatggagactcgctctgtcgcccaggctggagtgcaatggcatgatctcagctcactgcaagctccgcctcccgggttcaaccagttctcctgcctcagcctcccgagtagctgagattacaggcacctgccacc-----------------acccccggctaattttttgtatctttagtaaagatggggtttcaccatgttg-ccaggctggtgttgaactcctgacctcagacgatccacctgcttcggcctcccaaagtgctgggattacagatgtaaggcaccggcgcccagccTCAAAGCTCATCTTCTAAGGCATGCAGAAACTCAGTCAGCTCCACAGATCTGAGATCTAAATGAGCAGTGCAACCTTGCTTATGGAGACTCGGGCAGGCAGGGAGAACAGAGTCTTGGCCCAGGCCACCAAGGAGGAGGCAAGATGCCAGATGGAGAAGGGGTTGCCCCAAGCCCCAGGTTGACATGGAAGTTGGGAACAGCCAAGCAGAGAATCTCAGGATCTCCATGGAGGCTAAGAACCTTTCATTGGAGATTCAACTTTTGCAATAAGCAGTGCTGGGTTACATAAGTGCCTAATTAAGACCCTTGGAACTAATTATATAGGACAGAGAGGAGGTGATGGTGAAGACGTGAGATTCTAAGCTGTGATGATACTTACCAAGTGAGAGGATCAAGACCCACCGATGAACTCCTGGTAGTAGAGAGAGgataggcagat----agacagctagctagacagatagatagatgacagatagataattgatacatagattatagatttaatagataaatacac----agagaatacattagatagatgaatg----gatagatggatgaatggatagacacagac--------atagatagatagGTG s panTro2.chrX 772915 1198 + 155361357 TGGTCATCGGAGGAGCTTACCACTCTTCTCAATGGGCACCAGTGAGGAGGGTGACAGGCGCTTGGAGTCCCTGTGGGTTCTGGGATTCTGAGCTGTCACAGCGATAAGCCAGGGTCGATGGTTTCCTGAGGGGTTTGGCAAGCCTCAGCCCTTGGGTTCACTCCTCAACATTCGTGAAACAAAACAGACTTTTCAAATCGTGTTTAAAACAATTAGCGTGTTTACCCAAACAAAGGTTAAGCCTGCAAAGGAAAAGGGGATGCAAATGCTACCAAGCATTGCAGCTTTTACAGTTTTGCACACATCCTTCAAAGCTCATCttctt----------ttttttttcttttttttgagatggagtctcactctgttgcccaggctggagcacaatggcgtgatctcggctcaccgcaacttccgcctccggggttcaagcagttctcctgcctcagcctcccgagtagctgggattacaggcacctgccacc-----------------acccccggctaattttttgtatctttagaaaagatggggtttcaccatgttggccaggctggtgttgaactcctgacctcaggcaatccacctgcctcggcctcccagagtgctgggattacagacgtgagccaacg-cgcccggccTCAAAGCTCATCTCCTAAGGCATGCAGAAACTCAATCAGCTCCACAGATCTGAGGTCTAAATGAGCAGGGCAACCTTGCTTATGCAGACGCGGGCAGGCAGGGAGAACATGGTCTCTGCCCAGGCCACCAAGGAGGAGGCAAGATGCCAGATGGAGAAGGGGTTGCCCCAAGCCCCAGGTTGACATGGAAGTTGGGAACAGCCAAGCAGAGAATCTCAGGATCTCCATGGAGGCTAAGAACGTTTCATTGGAGATTCAACTTTTGCAATAAGCAGTGCTGGGTTACATAAGTGCCTAATTAAGACCCTTGGAACTAATTATATAGGACAGAGAGGAGGTGATGGTGAAGACATGAGATTCTAAGCTGTGATGATACTTACCACATGAGAGGATCAAGACTCACCGATGAACTCCTGGTAGTAGAGAGAGGATATGCagatagggagacagctagctagacagatagatagatgacagatagataATTGATACATTGATTATAGATTCAATAGATAAATACAC----AGAGAATACATtagatagatggatggatagatagatggatgaatggataga------------------------------ i panTro2.chrX C 0 I 409 s gorGor1.Supercontig_0000485 22018 1227 + 32581 TGGTCATTGGAGCACCTTGCCACCCTCCTCAATGGGCACCGGTGAGGAGGGTGACAGGTGCTTGGAGTTCCTGTGGGTTCTGGGATTCCAAGCTGTCACAGCGATAACCCAGGGTCGATGGTTTCCTGAGGAGTTTGGCAAGCCTCAGCCCTTGGATTCATTCCTCAACATTCGTGAAGCAAAACAGACCTTTCAAATCATGTTTAAAACAATTAGCGTGTTTACCCAAACAAAGGTTAAGCCTGCAAAGGAAAAGCGTCTGTAAATGCGATCAAGCATTGCGGCTTTTACAGTTTTCCATGAATCCTTCAAAGCTCATCttcttcttctt----cttttttttttttttttgagatggagactcgctctgtcgcccaggctggagcgcaatggtgtgatctcagctcaccgcaagctctgcctcccgggttcaagcagttctcctgcctcagcctcccaagtagctgggattacaggcacctgccacc-----------------acccccggctacttttttgtatctttagtaaagatggggtttcaccatgttggccaggctggtgttgaactcctgacctcaggcaatccaccagcttcgacctcccaaagtgctgggattacagatgtaaggcaccagcgcccagccTCAAAGCTCATCTTCTAAGGCATGCAGAAACTCAGTCAGCTCCACAGATCTGAGGTCTAAATGAGCAGTGCAACCTTGCTTATGGAGACTCGGGCAGGCAGGGAGAACACAGTCTTGGCCCAGGCCACCAAGGAGGAGGCAAGATGCCAGATGGAGAAGGGGTTGCCCCAAGCCCCAGGTTGACATGGAAGTTGGGAACAGCCAAGCAGAGAATCTCAGGATCTCCATGGAAGCTAAGAACCTTTCATTGGAGATTCAACTTTTGCAATAAGCAGTGCTGGGTTACATAAGTGCCTAATTAAGACCCTTGGAACTAATTATATAGGACAGAGAGGAGGTGACGGTGAAGACATGAGATTCTAAGCTGTGATGATACTTACCACATGAGAGGATCAAGACCCACCGATGAACTCCTGGTAGTAGAGAGAGgataggcagat----agacagctagctagacagatagatagatgacagatagataattggtacatagattatagattcaatagataaatacac----agagaatacattagatagatgactg----gatagatggatgaatgaatagacacagacatagatagatagatagatagGTG i gorGor1.Supercontig_0000485 M 212 C 0 s ponAbe2.chr21 13274046 1166 + 48394510 TGGTCATCGGAGCACCTTGCCACCCTCCTCAATGGGCACCGGTGAGGAGGGTGACGGGTGCTTGGAGTTCCTGTGGGTCCTGGGATTCCAAGCTGTCACAGCGATAACCCAGAGTCGATGGTTTCCTGAGGAGTTTGGCAAGCCTCAGCCCTTAGGTTCATTCCTCAACATTCGTAAAGCAAAACAGACTTTTCAAATCGTGTTTAAAACAATTAGCACGTTTACCCAAACAAAGGTTAAGCATGCAAAGGAAAAGCGTCTGTAAATGCGATCAAGCATTGCAGCTTTTGCAGTTTTCCAGGAATCCTTCAAAGCTCATCTTCttcttcttcttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagcacaatgacgtgatctcagctcaccgcaagctccgcctccctggttcaagtagttctcctgcctcagcctctcgagtagctgggattacaggcgcctgctacctgtaatccccggctaattaccccggctaattgtttgtatctttagtaaagatggggtttcaccatgttggccaggctggtgtggaactcctgatctcaggcgatccacctgcctcggcctcccagagtgctgggattacagacgtgaggcaccg-cgcccggccTCAAAGCTCATCTTCTAAGGCATGCAGAAACTCAGTCAGCTCCACAGATCTGAGGTCTAAATGAGCAGGGCAACCTT------------------------------------------------------------------------------------GTTGCCCCAAGCCCCAGATTGACATAGAAGTTGGGAACAGCCAAGCAGAGAATCTCAGGATCTCCATGGAGGCTAAGAACCTTTCACTGGAGATTCAACTTTTGCAACAAGCAGTGCTGGGTTACATAAGTGCCTAATTAAGACCCTTGGAACTAATTATATAGGACGGAGAGGAGGTGATGGTGAAGACGTGAGACTCTAAGCTGTGATGATACTTACCACGTGAGAGGATCAAGGCTCACCGATGAACTCCTGGTAGTAGAGAGAGGATATGCagatagagagacagctagctagacagat-gatagatgacagatagatcattgatacatagattatagattcaatagataaatatacagatagagaatacattagatagatgaatggatagatagatggatgaatggataga--cagatat------atcaatagataggtg i ponAbe2.chr21 C 0 I 163 e rheMac2.chr3 158248006 19906 - 196418989 I a score=89318.000000 s hg19.chrUn_gl000239 21945 416 + 33824 GTCTTcatgtaaagacaaggtgttt----cttctggaagattcatcaggaaggcgccatcttggaggcaaaggagagccctcatcagGGCTGTTTATCTATCCACCTACCTATCTATCAATATTTATTgatagataggtaggtggatagatagatacatagatgattgattgatagat----------------atagatgatgaatatatagatagatgatagatgattgatagttgatagatgattgatagatgattgatagaaagatgatagatgttagatacatagat----gatagattgatgataggtagatgata---gatgaatatatagataaatgatagatgattgatatatagatgatagatgattgatagaaagatgatagatgt----tagatatatagatac----atagatagatagtagatagataaattgattg s gorGor1.Supercontig_0000485 23245 410 + 32581 GTCTTcatgtaaagacaaggtgttt----cttctggaagattcatcaggaaggcgccatcttggaggcaaagaagagccctcatcagGGCTGTTTATCTATCCACCTACCTATCTATCAatagatattgatagataggtaggtggatagatagatacatagatgattgattgatagat---------------gataggtgatgaatatatagataga-----------tgatagttgatagatgattgatagatgattgatagaaagatgatagatgttagatacatagat----gatagattgatgataggtagatgata---gatgaatatatagataaatgatagatgattgatatatagatgatagatgattgatagaaagatgatagatgt----tagatatatagatacgtagatagatagatagtagatagatcaattgattg i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13275375 403 + 48394510 GTCTTcatgtaaaaacaaggtgtttcttccttctggaagattcatcaggaaggcaccatcttggaggcaaagaacagccctcatcagGGCTGTTTATCTATCCACCTACCTATCTATCAata------gatggataggtaggtg----gatagatacatagatgattgattgatagatagatgataggtagatgatagatgacgaatatatagatagg-----------tgatagatgatagatagatgatagatgattgatagaaagatgatagatgttagatacatagatgatagatagattgatgataggtagatgatagatgatgaatatatagatagatgatagatgattgatatatagatgatagatgattgat----agatgatagacgttagatagatatatagatac----atagatagatag------------------- i ponAbe2.chr21 I 163 I 16 e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 774113 409 + 155361357 I a score=139947.000000 s hg19.chrUn_gl000239 22361 571 + 33824 atagatgatagataggtaatagacagatagGAACTCTCCAGTCAGCCTAGACTTAGCTAGTCAAGGTCCCATCTGTAGAGTTTCCAGGTGAACGTCATCTCTATTAGCCATTGAGTCCACGTAAATCATGTATCTGCATCTGCCTGGatttgttttcactgctagaacagagtccctaagactgtgtggtttatacagagcagagatgtatttactcctggttctgaaggaggagaagtccaagatggaggcaccagcagattccatatctgatgagggctgttctttgactccaagatggcacattcctgctgaatcttccagaaggaagaaaccccttgtccttagatgaagaccaaggcaccagaagattccatatctgatgagggctgttctttgcctccaagatggcaccttcctgatgaatcttccagaaggaagaaacaccttgtctttacatgaagaccaaggcaccagcagattccatatctgatgagggctgttctttgcccccacgatggtgccttcCTGATGAATATTCCAGAAGGAAGAAACACCTTGTCCTTACATG s panTro2.chrX 774522 569 + 155361357 ATAGGTGATAGATAAGCAATAGACAGATAGGAACTCTCCAGTCAGCCTAGACTTAGATAGTCAAGGTCCCACCTGTGGAGTTTCCAGGTGAACGTCATCTCTATTAGCCTTCGAGTCCACGTAAATCATGTATCTACATCTGCCTGGatttgttttcaccgctagaacagaatccctgagac--tgtggtttataaagagcagagatttatttactcctggttctggaggtggagaagtccaagatgaaggcaccagcaaattccatatctgatgagtgctgttctctgcctccaagatggcgccttcctgctgaatcttccagaaggaagaaaccccttgtccttacatgaagaccagggcaccagaagattccatatctgatgggggctgttctctgcctccaagatgtcaccttcctgctgaatcttccagaaggaagaaacaccttgtccttacatgaagaccaaggcaccagcagattccatatctgatgagggctgttctctgcctccaagatggcgccttcctgctgaatcttccagaaggaagaaacaccttgtccttacatg i panTro2.chrX I 409 I 700 s gorGor1.Supercontig_0000485 23655 557 + 32581 atagatgatagataggtaATAGACAGAGAGGAACTCTCCAGTCAGCCTAGACTTAGCTAGTCAAGGTCCCATCTGTGGAGTTTCCAGGTGAACATCATCTCTATTAGCCATTGAGTCCACGTAAATCATGTATCTGCATCtgcctggatttgttttcactgctagaacagagtg----------tgtggtttataaagagcagagatttatttactcctggttctgga---ggagaagtccaagatggaggcaccagcagattccatatctgaggagggctgttctttgcctccaagatggcacattcctgctgaatcttccagaaggaagaaacaccttgtctttacatgaagaccaaggcaccagcagattccatatctgatgagggctgttctttgcctccaagatggcgccttcctgatgaatattccagaaggaagaaacaccttgtccttacatgaagaccaaggcaccagcagattctatatctgatgagtgctgttctctgcctccaagatggcaccttcctgctaaatcttccagaaggaacacacaccttgtccttacat- i gorGor1.Supercontig_0000485 C 0 C 0 e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=0.000000 s hg19.chrUn_gl000239 22932 109 + 33824 aagaccaaggcaccagcagattctatatctgatgagtgctattctctgcctccaagatggcaccttcctgctaaatcttccagaaggaagacacaccttgtccttacat e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 775091 700 + 155361357 I e gorGor1.Supercontig_0000485 24212 0 + 32581 C a score=94214.000000 s hg19.chrUn_gl000239 23041 1057 + 33824 ggtaaaggtggaagaccaagGGAACTGAATGTTACAGGAAGCCTGTCtcttactgtctttctttctttctttctttctttctttctctctctctctctttctttctttttctttctttctttctctctttttttcgagaaggagtcttgctctatcgcccaggctggagcacagcggtgtgacctcggctcactgcaacctccacctcacaggttgaaacaattcttctgcctcagcctcctgagtagctgggattacaggtgcctgccaccacatccggctaatttttgtatttttagcagagacggggtttcaccatgttggccaggctgatcttgaacccctgacctcatgatccacccacctcggcctcccaaaatgctgggattacaggcatgagccaccgtgtccggccAGGaagcctctttcctaaggaccttaagcccattcatgagaaagatgccaccatggcctgatcaccccttTTTTAATTCACGTTATGTTATGTTAttttgtttttgttttttatttttttgacacaaggtctggctatatcacccaggctggagtgaagtggtatcatctcagcttactacaacctctgtctactgggctcaaacgatcttcccacctcagcctcccaggtagctaggactacagtcatgcaccaccatgcccagctcacttttgtactttttatagagacagggggttcatcatgttgcccaggctggtctcaaactcatgagctcaggcaatcttacttcctccgactcccaaagtcctgggattacaggcctgagccactgtgcTGCCCCT-CtttttttttagttttaatttaatttttatttattttttatgtatttatttattATTATTAttttgagacgaagtcttgctctgttgcccaggcttgagtgcattggcatgatctcggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccagtagctaggattacaggcacttgccactacgcccggctaatttttgtatttttagtagagacagg s gorGor1.Supercontig_0000485 24212 1052 + 32581 ggtaaaggtggaagaccaagGGAACTGAATGTTACAGGAAGCCTGTCtctttctgtctttctttctttctctctttctttctttctatctttctctc--tctctctctttctttctttctttctctctttttttcgagaaggagtcttgctgtatcgcccaggctggagcacagtggtgtgacctcggctcactgcaacctccacctcccgggttgaaacaattcttctgcctcagcctcctgagtagctgggattataggtgcctgccaccacacccggctaatttttgtatttttagcagagacggggtttcaccatgttggccaggctgatcttgaactcctgacctcatgatccacctgcctcggcctcccaaaatgctgggattacaggcatgagccaccgtgtctggccagtaagcctctttcctaaggaccttaagcccattcatgagaaagatgccatcatggcctgatcaccccttTTTTAATTCATGTTATATTATGTTAttttgtttttgttttttatttttttgacacaaggtctggctatatcacccaggctggagtgaagtggtatcatctcagcttactacaacctctgtctactgggctcaaacgatcttcccacctcagcctcccaggtagctaggactacaggcatgcaccaccatgcccagctcacttttgtactttttatagagac--ggggttcatcatgttgcccatgctggtctcaaactcatgagctcaggcaatcttccttcctccaactcccaaagtcctgggattacaggcctgagccactgtgcTGCCCCtattttttttttagttttaatttaatttttatt--ttttttatgtatttatttattattattattttgagacgaagtcttgctctgttgcccaggcttgagtgcattggcatgatctcggctcactgcaacttccacctcctgggttcaagcaattctcctgcctcagcctcccagtagctaggattacaggcacttgccactacgcccggctaatttttgtatttttagtagagacagg i gorGor1.Supercontig_0000485 C 0 I 12 e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 775091 700 + 155361357 I a score=0.000000 s hg19.chrUn_gl000239 24098 2 + 33824 gt e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e panTro2.chrX 775091 700 + 155361357 I e gorGor1.Supercontig_0000485 25264 12 + 32581 I a score=13027.000000 s hg19.chrUn_gl000239 24100 182 + 33824 ttcaccacgttggtcaggctggtcttgaacttctgagctcaggcaatctgcctgcctctgcctcccaaagtcctgggattacagtcctgagccactgtgcAGCTCCTCtttttttatt---------ttaatttttatttattttttatGTATGTAtttattttt---tttttgagacaaagtctcactctgtt s panTro2.chrX 775791 194 + 155361357 ttcaccatgttgcccaggctggtctgaaactcatgaactcaggcaatctgccttcctctgactcccaaagtcctgggattacaggcctgagccactgtgcTGCCTCTCttttttttttaattttaatttaatttttatttattttttatGTAtttatttattattatttttttgagacaaagtctcactctgtt i panTro2.chrX I 700 C 0 e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I e gorGor1.Supercontig_0000485 25264 12 + 32581 I a score=200924.000000 s hg19.chrUn_gl000239 24282 831 + 33824 gcccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcccaggttcaagctagtctcctgcctcagcctcctgagtagctgggactacaagcccccactaccacgcccggctaatttttgtatttttagtagagac-gggtttcaccaccttggtcaggctggtcttgaacttctgacctctggtgatatgcccgcctcagcctcccaaaatgctgggatgacaggtgtgagtcaccgcacctggccTCTTTGCTTTTCTTAAGTGACTCCATGGGGGACCCATGCAGCCAGCAGCATCTCGGCTTTTTCTCCCTGGAAGATGTCTGCAGGAAACCAGCATCCCAGTTAACTTCAGACGCGAGAGTGTTGATTATACACTCAAGGCCCCACATTAGGGAAGTTTGTGAGTCACAGCCCCACACTGGGTCTCCCAGGGATCAACAAGATCCACAAACCAGCATGGTTAGGACAAGTGGTTTTACAGTCCttttttttttttttt--tttgtgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcctgggttcatgccattctcctgcctcagcctcctgaatagctgggactacaggctcccacgaccacgcccgcctaatg-tttttttgta-ttttagtagagacagggtttcactgtgttagtcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctggcattacaggcgtgagccactgtgtcGCCC-ttttttttccttctttttaattcctttt s panTro2.chrX 775985 824 + 155361357 gcccaggctggagtgcagtggcgtgatcttggctcactgcaacctccacttcccgggttcaagcaattctcctgcctcagcctccccagtagctgggattacaggcacttgccaccacgcccggctaatttttgtatttttagtagagaccgggtttcgccacgttggtcaggctggtctcgaactcctgacctc--gtgatccacccgcctcagcctcccaacgtgctgggatgacaggcgtgagccacagcgcccggtcCCTTTGCTTTCCTTAAGTGACTCTATGGGGGACCCATGCAACCAGCAGCATCTCAGCTTTCTCTCGCTGGCAGGTGTCTGCGGGAAACCAGCATCCCAGTTCACTTCAGACGCAAGCGTGTTGATTATAGGCTCAGGGCCGCACATTAGGGAAGCGTGTGAGTCACAGCCCCACACTGGGTCGTCCAGGGATCAAGAAGATCAACAAACCAGCATGGTTAGGACAAGTGGTTTTACAGTCCttttttttttttttt------tgagacagagtcttgctctgtcacccaggctggagtgcagtggcgcaatcttggctcactgcaacctccacctcccgggttcaagccattctcctgcctcagcctcccgagtagctgggactactggtgcccaccaccacacccggctga----ttttttatacttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcccaaagtcctgagattacaggcgtgagccactgtgtcGCCC-ttttttcttcttctttttaattcctttt i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 25276 836 + 32581 gcccaggctggagtgcagtggcatgatctcggctcactgcaacctccacctcccaggttcaagctagtcttctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacacccggctaatttttgtatttttagtagagacggggtttcaccacgttggtcaggctggtcttgaacttctgacctctggtgatgtgcccacctcagcctcccaaaatgctgggatgacaggcatgagtcaccgcacccggccTCTTTGCTTTTCTTAAGTGACTCCATGGGGGACCCATGGAGCCAGCAGCATCTTGGCTTTTTCTCCCTGGCAGGTGTCTGCGGGAAACCAGCATCCCAGTTAACTTCAGACGCGAGNGTGTTGATTATACGCTCAGGGCCCCACATTAAGGAAGTTTGTGAGTCACAGCCCCACACGGGGTCGCCCAGGGATCAACAAGATCCACAAACCAGCATGGTTAGGACAAGTGGTTTTACAGTCCttttttttttttttttttttttgagatggagccttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccacctcctgggttcatgccattctcctgcctcagcctcctgaatagctgggattacaggctcccaccaccacgcccggctaatgttttttttgta-ttttagtagagacagggtttcactgtgttagtcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgtgtcACCCtttttttcttcttctttttaatncctttt i gorGor1.Supercontig_0000485 I 12 C 0 e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=30297.000000 s hg19.chrUn_gl000239 25113 156 + 33824 tttgagacggagtctcactctgtcgcccag--gctggagtgcagtggcgcgatct---tggctgactgcaacctccgcctcccgggttcactccattctcctgcctcagcctcctgagtagctgggactataggtgcccgccaccacgcccggctaa-------tttt s gorGor1.Supercontig_0000485 26112 163 + 32581 tttgagacggagtctggctctgtcgcccag--gctggagtgcggtggtgcgatct---tggctgactgcaacctccgcctcccgggttcactccattctcctgcctcagcctcctgagtagctgggactataggtgcccgccaccatgcccggctaattttttttttt i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 776809 151 + 155361357 tttgagacagagtctcgctctgtcacccag--gctggagtgcagtggcgtgatct---tggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgaggagctgggactacaggtgcccaccaccacgctcagcta------------ i panTro2.chrX C 0 C 0 s otoGar1.scaffold_16806.1-6231 1069 132 + 6231 -------------CTCAAGTAACCACCCAGCAGCCAAAAATAGCTTGGGGGACATGTGTGGCTCCCAGGCACCTGCCTCTGCCTGGGAACGTCCCCCCTCCC-CCGGGGGCTCTGTGGCAGGTGCG--TGCAGGAAGCCCACATCATG-------------------- i otoGar1.scaffold_16806.1-6231 N 0 I 807 e ponAbe2.chr21 13275778 16 + 48394510 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=50403.000000 s hg19.chrUn_gl000239 25269 101 + 33824 ttttttttttttgtattttagtagagatgcggtttcaccgtgttagccaggatggtctctatctcctgaccttgtgatccgtccgcctcggcctcccaaag s ponAbe2.chr21 13275794 100 + 48394510 TTTTTTttttttgtattttagtagagacg-ggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaag i ponAbe2.chr21 I 16 C 0 s gorGor1.Supercontig_0000485 26275 101 + 32581 ttttttttttttgtattttagtagagatggggtttcaccgtgttagccaggatggtctctatctcctgaccttgtgatccgtccacctcggcctcccaaag i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 776960 100 + 155361357 -ttttttttattttattttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatctgcccgcctcggcctcccaaag i panTro2.chrX C 0 I 318 e otoGar1.scaffold_16806.1-6231 1201 807 + 6231 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=113682.000000 s hg19.chrUn_gl000239 25370 243 + 33824 ggctgggattacaggcatgagccaccgcacccggccCCTTACAGTCCTTTTTAACTCACTTCTAGAAGAAACCATCTCAGCCGCTTTTACACATCTGCAGCTGAGACAAGTGTGGGGCACAGGTTTCCCTGGTGACCCAGGGAAGGGATCAAATTGCT--GTGTCCACTTTGCAACA-CCAGCATCTACCAGGTACTGCGAGGCAGAAGCTCAAAACCATGCATGACTTT-CCTTGGCttttttttt s panTro2.chrX 777378 246 + 155361357 tgctggggtgacaggcgtgagccactgcacctggccCTTTACAGTCCTTTTTAACGCACTTCTAAAAGAAACCATCTCAGCCACTTTTACACATCTGCAGGTGAGAGGAGTGTGGGGCACGGGTTTCCCCGATGACCCGGGGAAGGGATCAAGTTGCTAAGTGTCCGCTTTGCAACA-CCAGCGTCTACCAGGTACTGCCAGGCAGAAGCTCAAACCCATGCGTGACTTTTCCTTGGCTTTTTTTTT i panTro2.chrX I 318 C 0 s gorGor1.Supercontig_0000485 26376 243 + 32581 tgctgggattacaggcatgagccaccgcggccggccCCTTAGAGTCCTTTTTAACTCACTTCTAGAAGAAACCATCTCAGCCGCTTTTACACATCTGCAGCTGAGACAAGTGTGGGGCANAGGTTTCCCTGGTGACCCAGGGAAGGGATCAAATTGCT--GTGTCCACTTTGCAACA-CCAGCATCTACCAGGTACTTTGAGGCAGAAGCTCAAAACCATGCATGACTTT-CCTTGGCTTTTTTTTT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13275894 247 + 48394510 tgctgggatgacaggcgtgagccaccgctcccggccCTTTACAATCCTTTTTAACTCACTTCTAAAAGAAACCATCTCAACCGCTTTTACACATCTGCAGCTGAGACGAGTGTGTGGCACAGGTTTCCCCGCTGACCCGGGGAAGGGATCAAGTTGCTAAGTGTCCACTTTGCAACATCCAGTGTCTACCAGGTACTGTGAGGCAGAAGCTCAAACCCATGCGTGACTTTTCCTTGGTTTCTTTAAA i ponAbe2.chr21 C 0 C 0 e otoGar1.scaffold_16806.1-6231 1201 807 + 6231 I e rheMac2.chr3 158248006 19906 - 196418989 I a score=96358.000000 s hg19.chrUn_gl000239 25613 135 + 33824 tttt---ttaataaaCCTCTGTTCAAAAATAAACTTAACACGTTTTTCTG-AGCAGCCTGAACCTGTTCCCAATTTCTTGTCCACACAATAAAAAATATACAAGTGCATTATTTTAAGGGTGACTCTAGCTGACCTTTC s panTro2.chrX 777624 133 + 155361357 AAA------AATAAACCTCTGTTCAAAAATAAACTTAACACGTTTTTCTGGAGCACCCTGAACCTGTTCCCAATTTCTTGTCCAAACAATGAAAAATACACAAGGGCATTATTTTAAGGGTGACTCTAGCTGACCTTTC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 26619 130 + 32581 T--------AATAAACCTCTGTTCAAAAACAAACTTAACACGTTTTTCTG-AGCAGCCTGAACCTGTTCCCAATTTCTTGTCCACACAATAAAAAATATACAAGTGCATTATTTTAACGGTGACTNTAGCTGACCTTTC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13276141 131 + 48394510 A--------AATAAACCTCTGTTCAAAAATAAACTTAACACGTTTTTCTGGAGTAGCCTGAACCTGTTCCCAATTTCTTGTCCAAACAATGAAACATACACAAGTGCATTATTTTAAGGGTGACTCTAGCTGACCTTTC i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158267912 132 - 196418989 ---ttttttaataaaCCTCTGTTCAAACATAAGCTT-ACACATTTTTCTGGAGCAGCCTGAACCTGTTCCCAATTTCTTGTCCAAACAATGAAAAATATACAAGTGC---ATTTTAAGAGTGACTCTATCTGACCTTTC i rheMac2.chr3 I 19906 I 81 e otoGar1.scaffold_16806.1-6231 1201 807 + 6231 I a score=23729.000000 s hg19.chrUn_gl000239 25748 56 + 33824 TGTGGGGAGAAAA-ACGGCACCTGCCTGGAGCCAGAAGCGTGTTCGGAGAGTTTGAT s ponAbe2.chr21 13276272 56 + 48394510 CAGGGGGAAAAAC-ACAGCACCCGCCTGGAGCCTGAAGCGTGTTCGGAGCGTTTGAT i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 26749 56 + 32581 TGGGGGGAGAAAA-ACGGCACCTGCCTGGAGCCAGAAGTGTGTTCGGAGTGTTTGAT i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 777757 57 + 155361357 CGGGGGGCAAAAACACAGCACCGGCCTGGAGCCCGAAGCGTGTTCAGAGCGTTTGAT i panTro2.chrX C 0 C 0 e otoGar1.scaffold_16806.1-6231 1201 807 + 6231 I e rheMac2.chr3 158268044 81 - 196418989 I a score=189232.000000 s hg19.chrUn_gl000239 25804 276 + 33824 G--GCGTTTGATGTTAAGGCAGGGGCCACCTGGTTCGGCC-TGTCATCGAATGACGTTTTCACACCAGTCCCCAAAACAGGAGATCTGGAAAATCTGACATCCAAGGTTTTAGATCTTGGCTTAGAAAAACAGACATTCCAAGATGCCTGAAGTGTTTAAGTGGCTATTGCTAATTGGATAGTGTTGACTGTGGAAGT-AATGGATCCCAAATTGAAATGGGAGATTAGATGATTAGACGTATTCTCCAGATGCTTACAAAAACAATTA--------TGTGTGTGCGT s rheMac2.chr3 158268125 244 - 196418989 G--GCGTTTGATGTTAAGGCAGAGGCCACCTGGGTCAGCCTTGTCACCAGATGACGTTTTCACACCAGTCCGCAAAGCAGTAGATCTGGAAAATCTGACCTCCAGGGTTTTAGATCTCGGCTTCGAAAAATAGACATTCCAAAAAATCTGAAGTGTTTAAGCGACTATTACT----------------------------------CCCAAATTGAAATGGGAGAGGAGATGATTAGACGGATTCTCCAGACGCTTACAAAAACCATGA--------TGTGTGCATGT i rheMac2.chr3 I 81 C 0 s ponAbe2.chr21 13276328 227 + 48394510 G--GCGTTTGATGTTAAGGCAGGGGCCACCTGGGTCGGCC-TGTCATCGAATGACGTTTTCACACCAGTCCCCAAAGCAGGAGATCTGGAAAATCTGACATCCAAGGTTTTAGATCTTGGCTTAGAAAAATAGACATTCCAAGATGCCTGAAGTGTTTAAGTGGCTATTGCTAATTGGATAGTGTT--------------------------------------------------GACGTATTCTCCAGACGCTTACAAAGACAATTA--------TGTGTGTGCGT i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 26805 284 + 32581 G--GCGTTTGATGTTAAGGCAGGGGCCACCTGGGTTGGCC-TGTCATCGAATGACGTTTTCACACCAGTCCCCAAAACAGGAGATCTGGAAAATCTGACATCCAAGGTTTTAGATCTTGGCTTAGAAAAATAGACATTCCAAGATGCCTGAAGTGTTAAAGTGGCTATTGCTAATTGGATAGTGTTGACTGGGGAAGT-AATGGATCCCAAATTGAAATGGGAGATTAGATGATTAGACATATTCTCCAGACGCTTACAAAAACAATTAtgtgtgtgtgtgtgtgtgt i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 777814 279 + 155361357 GTGGCGTTTGATGTTAAGGCAGGGGCCACCTGGGTCGGCC-TGTCATCGAATGACGTTTTCACACCAGTCCCCAAAGCAGGAGATCTGGAAAATCTGACATCCAAGGTTTTAGATCTTGGCTTAGAAAAATAGACATTCCAAGATGCCTGAAGTGTTTAAGTGGCTATTGCTAATTGGATGGTGTTGACTGTGGAGGTAAATGGGTCCCAAATTGAAATGGGAGATTAGATGATTAGACGTATTCTCCAGATGCTTACAAAAACAATTA--------TGTGTGTGCGT i panTro2.chrX C 0 C 0 e otoGar1.scaffold_16806.1-6231 1201 807 + 6231 I a score=-647.000000 s hg19.chrUn_gl000239 26080 13 + 33824 ------------------------GTGTGT--------------------GTGGAGA---------------------------------------- s panTro2.chrX 778093 13 + 155361357 ------------------------GTGTGT--------------------GTGGAGA---------------------------------------- i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 27089 13 + 32581 ------------------------gtgtgt--------------------gtgGAGA---------------------------------------- i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13276555 13 + 48394510 ------------------------GTGTGT--------------------GTGGAAA---------------------------------------- i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158268369 13 - 196418989 ------------------------GTGTGT--------------------Gtggaga---------------------------------------- i rheMac2.chr3 C 0 C 0 s otoGar1.scaffold_16806.1-6231 2008 97 + 6231 AGATGAAGGGTAGATACATAATTAGTGGGTAGAAATAAATTAAATAGATGGTAGAAATAGATTTTAGATGATCGGACACATATATAACATGTAGATA i otoGar1.scaffold_16806.1-6231 I 807 I 2555 a score=395008.000000 s hg19.chrUn_gl000239 26093 560 + 33824 GAGAGAGAGAGAAAGGTATATAGACAgactgggcgcggtggctcacgccactaatcccagcactttgggaggctgaggcgggcagatcacctgaggtcaggagtttgagacaagcctggccaacatgatgaaaacccgtctctactaaaaatacaaaaattggctgggcgtggtggtctgtaaaaaattgactgggcctgtagtcccagctactcgggaggctgaggcaagagaatcacttgaacccgggaggtggaggttgcagtgagctgagatcgtgccactgcattccagcttgggtggcagaataata--ctgtctcaaaaaaagcaaaaaaGGATATATAGATAGACAATAGACATATTCTATTACAGATGGAAAGAAATAAACTAAATAGGTTAA--ACtagatagaaatagataactgttagaacgagatagatggtaggtatataattaatagaaaagacataaattaggacaatta----aatgatagacctaggtaaatatataaatgatagatagataacagatatatTATTAATACATAGGAATAGGTGAGTTAA s rheMac2.chr3 158268382 549 - 196418989 gagagataa--aaaggtatatagatagattgggtgcagcggttcacatcagtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagttcgagaccagcctggccagcatgatgaaaacccgtctctactaaaaataccaaaattggctgggcgtggtggtctgtaagaaattggctgggcctatggtcccagctactcgggaggctgaggcaagagaatcgcttgaacctgggaggtggaggttgcagtgagctgagatcgtgccactgcactccggcttgggtgacagaataagactctgtctcaaaaaaagaaaaaaagcatatatagatagacgatagaca-----tattacagatggcaagaaagaaactagacaggttaaacacgtgatagaaatagataactgttagaacgacatagatggtagatatataattaacagaaaatagataaatTAGAACAATTAAAGAAATGATA----TAGG--------TAAATAAATGATAGATAACAAATATATTATTAATACGTAGGAATAGATCAGTTAG i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 13276568 519 + 48394510 GAGAGATAG--AAAGGTGTATTGATAgaccgggcgcggtggttcacgccgctaatcccagcactttgggaggctgaggtgggcggatcacctgaggtcaggagttcaagaccagcctggccaacatgatgaaaacccgtctctactaaaaatacaaaaatcagctgggcgtggtggtctgtaaaaaattgcctgggcctgtagtcccggctactcgggaggctgaggcaagagaatcacttaaacccgggaggtggaggttgcagtgaactgagat---------------------------------------cTGTCTCAAAAAAAGAAAAAAAGGATAT----ATAGACAATAGACATATTATATTGCAGATAGAAAGAAATTAACTAGATAGGTTAA--ACTAGATAGAAATAGATAACTGTTAGAACAagatagatggtagatagataattaatagaaaag--ataaattaggacaattaaagcaatgatagacctaggtaaatacataaatgatagatagataacagatatattattaatacataggaatagatgagttag i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 27102 560 + 32581 GAGAGAGAGAGAAAGGTATATAGACAgactgggtgcggtggctcatgccgctaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagtttgagacaagcctggccaacatgatgaaaacccgtctctactaaaaatacaaaaattggctgggtgtggtggtctgtaaaaaattggctgggcctgtagtcccagctactcgggaggctgaggcaagagaatcacttg-acccgggaggtggaggttgcagtgagctgagattgtgccactgcattccagcttgggtggcagaataagactctgtctcaaaaaaagcaaaaaaNGGTATANAGATAGACAATAGACGTATTCTATTACAGATGGAAAGAAATAAACTAAATAGGTTAA--ACTAGATAGAAATAGATAACTGTTAGAATGagatagatggtaggtatataattaatag-aaagacataaattaggacaatta----aatgatagacctaggtaaatacataaatgatagctagataacagatatattattaatacataggaataggtgagttag i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 778106 523 + 155361357 GAGAGATAG---GAGGTGTATTGACAgaccgggcgcggtggttcacgccgctaatcccagcactttgggaggctgaggcgggtggatcaccggaggtcaggagttcgagaccagcctggccaacatgatgaaaacccgtctctactaaaaatacaaaaattgg----------------------------ctgggcctgtagtcccggctactcgggaggctgaggcaagagaatcacttcaacccgggaggtggaggttgcagtgagctgagatcgcaccactgcactctagcttgggcgacagaataagactctgtctcaaaaaaagaaaaaaaGGATAT----ATAGACAATAGACATACTATATCACAGATGGAAAGAAATGAACtagataggttaa--actagatagaaatagataactgttagaacgagatagatggtagatagataattaatagaaaagagataaattacgacaattaaagcaatgacagacctagg--------taaatgatagatagataacagatatattattaatacataggaatagatgagttaa i panTro2.chrX C 0 I 665 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I a score=25598.000000 s hg19.chrUn_gl000239 26653 56 + 33824 ATTACATAAATGATAGagataggtagataaatatatgacagatatatagagagata s gorGor1.Supercontig_0000485 27662 56 + 32581 attatataaatgatagagataagtagataaatatatgacagatatatagagagata i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13277087 54 + 48394510 attacataaatgatagagataggtagataaatatatgac--atatatagagagata i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158268931 52 - 196418989 ATTACATAAATGATAGaga----tagataaatatatgacagatatatggagagata i rheMac2.chr3 C 0 I 882 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I e panTro2.chrX 778629 665 + 155361357 I a score=137949.000000 s hg19.chrUn_gl000239 26709 726 + 33824 actggatagatgcatagatgatagagagctagataggcagatagtggagggatgat--------ag----gcaaatagatacagggatagatgataggtagac----aactgatacatagattatagatttgatacataa----atatatagataAATGGATGGATAATAGAG----GATGGATATATAGTAGATGATAAATAGTAGAGAGCTgataggtagatagatagacagctagctagctaggcggatagatgataggtagagggataattgatacatagattatagattcaatagataaatacatatatagatagatggatagatggatggataatagatagat-gatggatatatagtagactatagatagtagagagatggtaggtggatagacagctagctagctagatggagagatgatag----gtagataagtgatacatagattatagattcaacagata-----------------atgcattagat----agatag--------------------gtggatagatggctacagggatagatgataggtagatagataattgatacatagGTTACAGATTCAATAGATAAGTGCatatatagatagatgg----------------atagatggatggataatagatagatgatggatatatagtagacgatagatactagggagatgataggtagatagacagctagctag----acggatagatgataggtagataattgatacatagattatagattcaatagataa--------atagataatacattagatggatagatagatca s gorGor1.Supercontig_0000485 27718 722 + 32581 actggatagatgcagagatgatagagagctagataggcagatagtagagggatgat--------agataggcaaatagatacagggatagatgataggtagac----aactgatacatagattatagatttgatacataa----atatatagataaatggatggataatagaG----GATGGATATATAGTAGATGATAAATAGTAGAGAGCTGAtaggtagataga----cagctagctagctagacggatagatgataggtaganggataattgatacatagattacagattcaatagataaatgcatatacagatagatggatagacggatggataatagatagat-gatggatatatagtagactatagatagtagagagatggtaggtagatag----CTAGCTAGCTAGATGGAGAGATGATAG--------ATAAGTGATACATANATTATAGATTCAACagatag-------------ataatacattagatggatagatag--------------------atgaatagatagctacagggatanatgataggtagatagataattgatacataggttacagattcaatagataaatgcatatatagatagatgg----------------atagatggatggataatagatagatgatggatatatagtagactatagatagtagagagatggtaggtggatagacagctagctagctagatggagagatgataggtagataaatgatacatagattatagattcaacagnta------------gataatgcattagatagatagatag---- i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13277141 769 + 48394510 ac----tagatgcatagatgat----agctagataggcagatagtagagagatgatacatatgcagatagatagatagatacagggatagatgataggtagacagataattgatacatagattatagatttgatagataaatacatatatagatatatggatggataatagatagacgatggatatataatagagtatagataatagagagatgataggtagatagatagacagctagctagctagacggatagatgataggta----gatgactgatacatagattatagattcaatagatagataaatagata-acacat---tagatggacagatgatgaatagatagatagataaata------------------------ggtaggtggatag----atagatggctacagggatagatgatagctagatagataattgatacataggttatagattcaatagataaatacatagattacataataccttagatggatagatagatagataggtagataggtaagtggatagatagctacagggatagatgataggtagatagataattgatacataggttatagattcaatagataaatacatgtatagatagatgaatggatggatggatgcatagatggatggatgatagagagatgatggatatatactagatgatagatagtagagagatgataggtagatagctagctagccag--------acagatgataggtagataattgatacatagattatagattcaataggtaaatacgtagatagataatacattagatggatggataga--- i ponAbe2.chr21 C 0 I 8 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I e rheMac2.chr3 158268983 882 - 196418989 I e panTro2.chrX 778629 665 + 155361357 I a score=171921.000000 s hg19.chrUn_gl000239 27435 908 + 33824 ataggtaggtaggtagatagctacagggataggtgataggtaga----taattgatacataggttatagattcaatacataaatacatatatagatagatggatagattgatggatggatgatagaggatggatatatagtagatgatagatagatagtagagagatgataggtagatagatggctagctagccagacagatagatgataggtagataattgatacatagattatagattcaatagataaatacatagattagataatacattagatagataggtag----gtaagttgatagatagctactgggatagatgataggtagatagataattgatacacagattatagattcaatagataaatacatatatagatacatggatagatggatggatgcatagatggatggatgatagatacatgatggatatatagtagatgata--------gtagagagatgataggtagatagacggctagctagccaaacagttagatgataagtagataattgatacatagattatagattcaatagagaaatacatagattagataatacattagataggtagataggtaagttgatagctacagggatagatgataggtagata----attgatacatacgttatagattcaatagataaatacatat----atagatggatagatggatggatgcatagatggatggatgatagatgatggatatatagtagat----gatagatagtagagagatgataggtagatagacagctagctagccagacagatagatgataggtagatagttgatacataggttatagattcaatagataaatacatagatagataatacattagatggatggatagatagatgtatagatagatagctggatagagagatagctacagggatagatgatagg s panTro2.chrX 779294 812 + 155361357 ataggtaggtagatagatagatacaggaatagatgataggtagacagataattgatacatagattatagatttgatagataaatacatatatagatagatggat------------ggataatagaggatagatatatagtagatgataaatag----tagaaagatgataagtagatag----ctagctagctagacggatagatgataggtagatg--tgatacatagattatagattcaatagataa-----------------tacattagatggatagatga------------ataggtagatacagggatagatgataggtagacagataattgataaatagattatagattcgatagataaatacatatatagat----------------------------ggatggataatagatagatgatgggtatatagtaggcgata----catagtagagagatgatag--------acagctagctagctagatggatagatgata----gataattgatacatagattatacattcaatagataaata---------gataatacattagatggatagatgaatagatagatagctacagggatagatgataggtagatagataatcgatacataggttatagattgaatagataaata----t----ataggtggatagacagatggatacat----ggatggatgatagatgatggatatatagttaat----gatagatagtagagagatgataggtagacagacagctagctagccagacagatagatgataggtagataattgatacatagattatagattcaatagataaatacatagatagataatacattagatggatagataggtagatagatagataggtaagtggataga----tagttacagggatagatgatagg i panTro2.chrX I 665 C 0 s gorGor1.Supercontig_0000485 28440 879 + 32581 --------gtggatagatggctacagggataaatgataggtagatagataATTGATACATAGGTTACAGATTCAAtagataaatgcatatatagatagatggatagatggatggataatagatagatgatggatatatagtagacgatagatac----tagagagatgataggtagatag----acagctagctagacggatagatgataggtagataattgatacatagattatagattcaatagataa---------atagataatacattagatggatagatcaataggtaggtaggtagatagctacagggataggtgataggt----agataattgatacataggttatagattcaatagataaatacatatatagatagatggatagattgat------------ggatggatgatag----aggatggatatatagtagatgatagatagatagtagagagatgataggtagatagagggctagctagccagacagatagatgataggtagataattgatacatagattatagattcaatagataaatacatagattagataatacattagataggtagataggtaagttgatagctacagggatagatgataggtagata----gttgatacataggttatagattcaatagataaatacatatatagatagatggatagatggatggatgcatagatggatggatgatagatgatggatatatagtaggtgatagatagatagtagagagatgataggtagatagacagctagctagc----cagatagatgataggtagatagttgatacataggttatagattcaatagataaatacatagatagataatacattagacggatggataggtagatgtatagatag----ctggatagagagatagctacagggatagatgatagg i gorGor1.Supercontig_0000485 C 0 C 0 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I e ponAbe2.chr21 13277910 8 + 48394510 I e rheMac2.chr3 158268983 882 - 196418989 I a score=30901.000000 s hg19.chrUn_gl000239 28343 80 + 33824 tagatagataattgatacatagattatagattcaatagataaatacatagattacataatacattagatggatagatagg s gorGor1.Supercontig_0000485 29319 80 + 32581 tagatagataattgatacaaagattatagattcaatagataaatacatagattacataatacattagatggatagatagg i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 780106 71 + 155361357 tagatagataactgatacatagattatagattcaatagataaataca-------cata-tagat-agatggatagatagg i panTro2.chrX C 0 C 0 s rheMac2.chr3 158269865 79 - 196418989 taggtagataattgatacctagactatagattcaataggtaaatccataga-tagataatacattagatggatggataga i rheMac2.chr3 I 882 C 0 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I e ponAbe2.chr21 13277910 8 + 48394510 I a score=13158.000000 s hg19.chrUn_gl000239 28423 40 + 33824 tagataggtaagtcgat----agatagctacagggatagatgat s panTro2.chrX 780177 16 + 155361357 tggat----------------------------ggatagatgat i panTro2.chrX C 0 I 25 s gorGor1.Supercontig_0000485 29399 36 + 32581 tagataggtaagtc--------gatagctacagggatagatgat i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13277918 44 + 48394510 tagatacataggtggatagagagatagctacagggacagatgat i ponAbe2.chr21 I 8 C 0 s rheMac2.chr3 158269944 36 - 196418989 tagatggatagata--------gatagctacagggatagatgat i rheMac2.chr3 C 0 C 0 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I a score=30525.000000 s hg19.chrUn_gl000239 28463 64 + 33824 aggtagatatacaattgatacatagattatagattcaatagataaatacatatatagatggata s gorGor1.Supercontig_0000485 29435 64 + 32581 aggtagatagacaattgatacatagattatagattcaatagataaatacatatatagatggatn i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13277962 64 + 48394510 aggtagacagacaattgatacatagattatagattcaatagataaatacacatatagatagatg i ponAbe2.chr21 C 0 I 4 s rheMac2.chr3 158269980 60 - 196418989 ----agatagataattgatacatagatgatagattcaatagataaatacatatatagatagatg i rheMac2.chr3 C 0 C 0 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I e panTro2.chrX 780193 25 + 155361357 I a score=239757.000000 s hg19.chrUn_gl000239 28527 331 + 33824 ----gatggatggatggatgatagatgatggatatatagtagatga-tagat-gattgatagatagatgatagatgttagatagattatatataaatagatcaataggtcgatagatgatagatgggtaatagatagacagaAACTCCCCAGTCTGCCTAAGATATTTTCTGTTATTTTATAAGACATAACCCTCATGAGTTCTTTTGTATCTGCTGCTGCTGTTATTCTGAAAATAGTGTAAAGTTTTGGAGTTTCAGGTACAAGAGGACCCTGCAGATATCAGCCACCTGCTTTTCCCTCCCTTCCTGGGGATGTTCGGTTCTGCCTAACACGCA s rheMac2.chr3 158270040 292 - 196418989 gctagatggatggatgatagatagatgagggatacatagcagatga-tagat-----gattgatagatgatagatgttagatagattatagataaatagatccataggtcgatagatgatagatgggtaatagacagacagaAACTCTCCAG------------------------------------AACCCTCATGCA-TCTCTTGTATCTGCTGCTGCTGTTATTCTGAAG--AGTCTTAAGTTTTGGAATTTCAGGTACAAGAGGACCCTGCAGATATCGGCCACCTGCTTTTCCCTCCCTTCCTGGGGAGGTTCAGTTCGGCCTCACACCCA i rheMac2.chr3 C 0 C 0 s ponAbe2.chr21 13278030 331 + 48394510 ----gatggatggatggatgatagatgatggatatatagtagatga-tagat-gattgataggtagatgatagatgttagatagattatatacaaatagatcaataggtcgatagatgataaatgggtaatagatagatagaAACTCCCCAGTCTATCTAAGATATTTTCTGTTATTTTATAAGACATAACCCTCATGAGTTCTTTTGTATCTGCTGCTGCTGTTATTCTGAAAACAGTCTTAAGTTTTGGAGTTTCAGGTACAAGAGGACCCTGCAGATATCCGCCACCTGCTTTTCCCTCCCTTCCTGGGGAGGTTTGGTTCTGCCTCACACGCA i ponAbe2.chr21 I 4 C 0 s gorGor1.Supercontig_0000485 29499 321 + 32581 --------gatggatggatgatagatgatggatatagagtagatga-tagat-----gattgatagatgatagatgttagatagattatatataaatagatcaataggtcgatagatgatagatgggtaatagatagacagaAACTCCT--GTCTGCCTAAGATATTCTCTGTTATTTTATAAGACATAACCCTCATGAGTTCTTTTGTATCTGCTGCTGCTGTTATTCTGAAAATAGTGTAAAGTTTTGGAGTTTCAGGTACAAGAGGACCCTGCAGATATCAGCCACCTGCTTTTCCCTCCCTTCCTGGGGAGGTTCGGTTCTGCCTAACACACA i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 780218 333 + 155361357 ----gattgatagatagatgatagatgttagatagattatagataaatagatcaatagatcgatagatgatagatgttagatagattatatataaatagatcaataggtcgatagatgatagatgggtaatagatagacagaAACTCCCTAGTCTGCCTAAGATATTTTCTGTTATTTTATAAGACATAACCCTCATGAGTTCTTTTCTATCTGCTGCTGCTGTTATTCTGAAAATAGTGTAAAGTTTTGGAGTTTCAGGTACAAGAGGACCCTGCAGATACCAGCCATCTGCTTTTCCCTCCCTTCCTGGGGAGGTTCGGTTCTGCCTCGCACGCA i panTro2.chrX I 25 C 0 e otoGar1.scaffold_16806.1-6231 2105 2555 + 6231 I a score=23180.000000 s hg19.chrUn_gl000239 28858 35 + 33824 CTCTCT--GGTATATCCCTGTGGGTCTCAGAGCCGCC s panTro2.chrX 780551 35 + 155361357 CTCACT--GGTACATCCCTGTGGGTCTCAGAGCCGCC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 29820 35 + 32581 CTCTCT--GGTACATCCCTGTGGGTCTCAGAGCCGCC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13278361 35 + 48394510 CTCACT--CCTACATCCCTGTGGGTGTCAGAGCCGCC i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158270332 34 - 196418989 CTCACT--TGTACCT-CCTGTGGGTCTCAGAGCCGCC i rheMac2.chr3 C 0 C 0 s otoGar1.scaffold_16806.1-6231 4660 25 + 6231 CTCCCCAACGTACTCCCCTG-GGGTG----------- i otoGar1.scaffold_16806.1-6231 I 2555 N 0 a score=161997.000000 s hg19.chrUn_gl000239 28893 293 + 33824 CCCTCCTTGTCTGCAAAGAGGGAGGTGCGGTGCCCACTCCGGGGA-CCCCCTTCATCCTTGGGGCACTCAGCGTGTGAGTCAGCTTGGCCTTCTCCTTCACAGACAAGTGTCATTGTCACAAGAGAGCGTGGGCCATTCAGAGGACTCTCACCCTCATGAGGCTGGCATTGCGTGTCACCGCGTTGGAGCCAGAGGCAACCTCAAAACGCAGGGGCCCTGCTTCCCTCTTCTCAGAAATGAGGAGAACCTCTGGTAGAGATGACTTTTGGGGGCTCGTGGGGTCGGTGCAGAGG s panTro2.chrX 780586 257 + 155361357 CCCTCCTTGTCTGCAAAGAGGGAGGTGTGGTACCCACTCCGGGGA-CCCCCTCCATCCTTGGAGCACTCAGTGTGCAAGTCAGCCTGGCTTTCTCCTTCACAGACAAGTGGCATTGTCACAAGAGAGCGTGGGCCATTCAGGGGACGCTCACCCTCATGAGGCTGGCATTGAGTGACACTGCGTTAGAGACAGAGGCAACCTCGAAAGGCATGGGCCCTGCTTCCCACTCCTCAGAAACGAGGAGAGCCTCTGGTAGA------------------------------------ i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 29855 294 + 32581 CACTCCTTGTCTGCAAAGAGGGAGGTGCGGTACCCACTCCGGGGACCCCCCTCCATCCTTGGGGCACTCAGCGTGCGAGTCAGCTTGGCCTTCTCCTTCACAGACAAGTGGCATTGTCACAAGAGAGCGTGGGCCATTCAGAGGACTCTCACCCTCATGAGGCTGGCATTGCATGACACTNCNTTGGAGCCAGAGGCAACCTCAAAACGCATGGGCCCTGCTTCCCTCTTCTCAGAAATGAGGAGAACCTCTGGTAAAGATGACTTTTGGGGGCTCACAGGGTNGGTGCAGAGG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13278396 211 + 48394510 CCCTCCTTGTCTGCAAAGAAGGAGGCAGGGTACCTGCTCTGGGGA-CCCCCTCCATTCTTGGGGCACTCAGTGTGCAAGTCAGCCTGGCCTTCTCCTTCACAGACAAGTGGCATTGTCACAAGAGA----------------------------------------------------------------------------------GCATGGGCCCTGCTTCCCTCTTCTCAGAAACGAGGAGAACCTCTGGTGGACATGACTTTTGGGGGCTCGTGGGGTCGGTGCGAGGT i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158270366 263 - 196418989 CCCTCCTTGTCTGCAAAGAGCGAGGCATGGTACCTGCTCCGGGGAACCCCCTCCATCCTTGGGGCACTCAGGGTGCAAGTCAGCCTGTCCTTCTCCTTCATGGACAGTTGTCACTGTCACAAGAGATCATGGGCCATTTAGGGGACGCTCACCCTCATGAGGCTGGCAT-------------------GCCAGAGGCAACCTCAAAATGCATGAGCCCCAGTTCCGTCTTCTCAGAAATGAGGAGAGTGTCTGGTAGAGCTGAC-TTTGGGGGTTCACGGGGT----------- i rheMac2.chr3 C 0 I 1545 a score=43734.000000 s hg19.chrUn_gl000239 29186 99 + 33824 GGGTGTCTGGGTCCGAGCTGGGACCCGGCTCTCAGGAGCCTCTTTACACTTCAGGTTGTCTGTGCCCGAGCAGATCCTGGGCTGTTGAATCATGGTAGG s gorGor1.Supercontig_0000485 30149 99 + 32581 GGGTGTCTGGGGCCGAGCTGGGACCTGGCTCTCAGGAGCCTCTTTACACTTCAGNTTGTCTGTGCCAGAGCAGATCCTGGGCTGTTGAATCATGGTAGG i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13278607 99 + 48394510 GGGTGTCTGGGGCTGAGCTGGGATCCGGCTCTCAGGACCCTGTTTACAGTTCAGGTTGTCTGTGCCCGAGCAGATCCTGGGCTGTTGAATCATGGTAGA i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158272174 99 - 196418989 GGGTGTCTGGGGCAGAGCCGTGATCCGGCTCTCAGTTGTCTCTTTACCGTTTGGGTTGTCTGTGCCTGAGCCCATCCTCAGCTGTTGAATCACGGTAGA i rheMac2.chr3 I 1545 C 0 e panTro2.chrX 780843 0 + 155361357 C a score=248081.000000 s hg19.chrUn_gl000239 29285 345 + 33824 CAAACCACAGAACGATCTTTTGGGGTGAAACCTCAGGCTCTGTTCACTCACTGGCATCGTCAAATCACACCTGCAAAGAGCTGACAAACTATTCCCTAAGCACAGAAATCCTCATGCTTATTT-GCGGCCATTCCGAGCCCTGCAGGTGGCTAGGGAGAGAGCCATAAGGTATTTCTTGTGGCGGGGGCGGGGGGCCCTCTCTGGCATTCCCAGGGCTG-CCCCCAGGACCTGGAATCAAGCAGGAGAAAGAAGGACATA-ACCGAGAGAAGGCTTCCTCTCCGTGAGGCCGTGGAGTCCGGCCCTGGCGGAAAATAAACTTCTTAATACGATTGAGATCAACAGACA s panTro2.chrX 780843 345 + 155361357 CAAACCACACAATGATCTTTTGGGGTGAAACCTCAGGCTCTGTTCACTCACTGGCATTGTCAAACCACACCTGCAAAGAGCTGGCAAACTATTCCCTAAGCACAGAAATCCTCACGCTTATCT-GAGGCCATTCTGAGCCCTGCAGGTAGCTAGGGAGAGAGCCATAAGGTATTTCTTGTGGCAGGGGCGGGGGGCCCTCTCTGGCATTCTCAGGGCTG-CCCCCAGGACCTGGAATCAAGCAGGAGAGACTAGGACATC-ATCTAGAGAAGGCTTCCTCTCCATGAGGCCGTGGAGTCCGGCCCCGGCGGAGAATAAACTCCTTAATACGATTGAGATCAACAGACC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 30248 345 + 32581 CAAACCACAGAACGATCTTTTGGGGTGAAACCTCAGGCTCTGTTCACTCACTGGCGTCGTCAAACCACACCTGCAAAGAGCTGGCAAACTATNCTCTAAGCACAGAAATCCTGATGCTTATTT-GCGGCCATTCCGAGCCCTGCAGGTGGCTAGGGAGAGAGCCATAAGGTATTTCTTGTGGCGGGGGGTGGGGTCCCTCTCTGGCATTCCCAGGGCTG-CACCCAGGACCTGGAATCAAGCAGGAGAAAGAAGGACATA-ACCGAGAGAAGGCTTCATCTCCGTGAGGCCGTGGAGTCCGGCCCCGGCGGAAAACAAACTTCTTATTACGATTGAGATCAACAGACA i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13278706 328 + 48394510 CAAACTGCAGAATGATCTTTTGGGGTGAAACCTCAGGCTCTGTTCACTCACTGGCGTCGTCAAACCACACCTGCAAACAGCTGGCGAACTATTCCCTAAGCACGGAAATCCTCATGGTTACCT-GGGGTCGTTCTGAGCCCTGCAGGTGTCCAGGGAGAGAGTCATAAGGTATTTCTTGTGGCAGGGGTTGGGGGCCCTCTCCGGCATTCTCAGGGCTGTCCCCCAGGACCTGGAATCAAGCAGAAGAGAGAAGCACATA-ACGTAGAGAAGGCTTCCTCTCCGTGAGCCCGTGGAGTCCGGCCCTGGCGGAAAATAAACTTCTTAATAC------------------ i ponAbe2.chr21 C 0 I 1005 s rheMac2.chr3 158272273 339 - 196418989 GAAACCACAGAACGATCTTTTGGGGTGAAACCCCAGGGTCTGTTCGCTCACTGGCATCGGCAAAGCGCACCTGCAAAGAGCCGGTCAACTATTCCCTAAGCACGGAAATCCTCATGCTTATCTGGGGGTAATTCCGGGCCCTGCAGGTGGTTAGG--GAGAGTCAGAAGATATGTCTTGGGGTGG-----GGGGGCCCATCACGGCATTCCCGGGGCTG-CCGGCAGGACCTGGAATCAAGCAGGAGACAGAAGGACATACCCCTAGAAGAGGTTTCCTCTCCGTGAGGCCGTGGAGTCCGGTCCCGGTGGAAAATAAACTTCTTAATACGATTGAGATCAACAGAT- i rheMac2.chr3 C 0 C 0 a score=130996.000000 s hg19.chrUn_gl000239 29630 285 + 33824 GGGCTTTTCTCTGTGATACATTTAAGCAAATTGAATGCAATTACCTCAATTGAATTCAGAGCAAGGCCTGCCCTGACCTTCC-CTGAAGC--GTTCTGCCCACTTGGAGAGCAGGCTGGGGCACACATGACATCATCTGGACAATTTGCACATATTTATACAATTTGTCATGATGCGGTCTGCACAGGCTAGAGGCTGCGAGGTTTGCCTCCAGCACCGCTGTGAAATCAGGCCTGTGAGAATCACGTGCTGGACATATCTCTTGTGTGTGCTATTTACTTCGAATTC s rheMac2.chr3 158272612 270 - 196418989 GGGCGTTTCTCCGTGATAAATTTAAGCAAATTGAACGTAATTACCTCAATTGAATTCAGACCAAGCCCTGCCCTGACCTTCCGCTGAAGCATATTCTGCCCGCTTGGGGAGGAGGCC--GGCGCACGTGACATGATTTGGACAATTTGCACATATTTATACAATTTGTCGTGATTCCGTCTGTACAGGCTGGAGGCGGCGAGGTTTGCCTCCAGCCCCCCTGTGAAATCAGGCATATGAGAATCACGTGCTGGACATACCTCTTGTGTGTGC---------------- i rheMac2.chr3 C 0 I 705 s gorGor1.Supercontig_0000485 30593 286 + 32581 GGGCTTTTCTCTGTGATATATTTAAGCAAATTGAATGCAATTGCCTCAATTGAATTCAGAGCTAGGCCTGCCCTGACCTTCCGCTGAAGC--GTTCTGCCCGCTTGGAGAGCAGGCTGGGGCACACATGACATCATTTGGACAATTTGCACATATTTATACAATTTGTCATGATGCCGTCTGCACAGGCTGGAGGCTGCGAGGTTTGCCTCCAGCACCGCTGTGAAATCAGGCCTGTGAGAATCACGTGCTGGACATATCTCTTGTGTGTGCTATTTACTTCGAATTC i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 781188 286 + 155361357 GGGCTTTTCTCTGTGATACATTTAAGCAAATTGAATGTAATTACCTCAATTGAATTCAGAGCAAGGCCTACCCTGACCTTCCGCTGAAGC--GTTCTGCGCACTTGGGGAGCAGGCTGGGGCACACATGACATCATTTGGACAATTTGCACGTATTTATACAATTTGTCATTATTCCATCTGTACAGGCTGGAGGCTGCGAGGTTTGCCTCCAGCACCGCTGTGAAATGAGGCCTGTGAGAATGACGTGCTGGACATACCTCTTGTGTGTGATATGTACTTCGAATTC i panTro2.chrX C 0 I 1761 e ponAbe2.chr21 13279034 1005 + 48394510 I a score=6116.000000 s hg19.chrUn_gl000239 29915 81 + 33824 AAGTGTACCTAGTCACTAGTGGGGGGAGTGGGGTGGATGTGTCTGTGTGTGTGTGTG------------------------GCGGGCAGAAGATGCAAATCCGTT s gorGor1.Supercontig_0000485 30879 105 + 32581 AAGTGTACCTAGTCACTAGTGGGGGGAGTGGGGTAGAtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgNCGGGCAGAAGATGCAAATCCNTT i gorGor1.Supercontig_0000485 C 0 C 0 e ponAbe2.chr21 13279034 1005 + 48394510 I e rheMac2.chr3 158272882 705 - 196418989 I e panTro2.chrX 781474 1761 + 155361357 I a score=50266.000000 s hg19.chrUn_gl000239 29996 207 + 33824 GATACAAATCAACAAGCAATATTATGGTATAAGGGAGGGAAATAAAGCCAGCAGGTGCTATAATACATGT---------------CAAAAAAAAATCTGTTTTATGCTTATGCCACTGTAAGACAACAGACAGCTGTGTAGAGGTGTGGCTTCAGCGACTGCCGAGGAAGGGTTATTTGTGGGTACAGCCATGGGATGTCAGAGGTGTCTCTATTCTGACCT s gorGor1.Supercontig_0000485 30984 207 + 32581 GATACAAATCAACAAGCAATATTATGGTATAAGGGAGGGAAATAAAGCCAGCAGGTGCTATAATACATGT---------------CAAAAAAAAATCTGTTTTATGCTTATGCCACTGTAAGACAACAGACAGCTGTGTAGAGGTGAGGCTTCAGCGACTGCCGAGGAAGGGTTATTTGCAGGTACAGCCATGGGATGTCAGAGGTGTCTCTATTTTGACCT i gorGor1.Supercontig_0000485 C 0 C 0 s rheMac2.chr3 158273587 222 - 196418989 gatacaagccaacaagcaatgttATGATATAAGGGAGGGAAATAAAGCCAGCAGGTGCTATAATACATATAACAAAAAAAAGAAAAAAGAAAAAATCTGTTCTATGCTCATGCCACTGTAAGACGACGGACAGCTGTGTACACGTGTGACTCCACCAACTGCCGAGGAAGGGTTATTTGCAGGTACAGCCACGGGATGTCAGAGGTCTCTCTATTTTGACCT i rheMac2.chr3 I 705 C 0 e ponAbe2.chr21 13279034 1005 + 48394510 I e panTro2.chrX 781474 1761 + 155361357 I a score=204174.000000 s hg19.chrUn_gl000239 30203 497 + 33824 CAGGCACTGAGGTCCTGCCCACGAATGGCGTGGTAGTGTGGGGA-ATATCCGAAGGAAAACAGAGAGGTGTCTGGATGATCTGTTTTGTTGC-AGGAAGCAAACCAGCATGATGCAGGCAGCCTGAACTGAGAAAAGGAGGTTTCCGGATTTCCAAAGACACACTGAGTTCGCTGACATGTATCAGGGAGAAAAGCTCATTCAGAGATCTCCGCTGTATTACAAATTTTAATTTCTCCTGGCGTGGGAGTTCACAGCAGCCTTATGGA-GGGAAATTCCTCCAAGCCTGCGTGTCATAAACTGAACTACAGGGTTTAGGGTCCTCAGGCTGCCCAGGGATGCTGGAGGTCCACAGGTCAACTGCAGGGAGATGGATTCCCCAAATGAGCAAGAGGGTTCTGATGCTCAGGAAATAGATTAGTAGCTCCAGGCAGGTGTGGCTTCATGACCGTAAGGAAATGGAAGCAAAGAGTTGTTGGGCATGTAGAACTTTCATTTCT s gorGor1.Supercontig_0000485 31191 497 + 32581 CAGGCACTGAGGTCCTGCCCACGAATGGCGTGGTAGCGTGGGGA-ATATTCGAAGGAAAACAGAGAGGTGTCTGGATGATCTGTTTTGTTGC-AGGGAGGAAACCAGCATAATGCAGGCAGCCTGAACTGAGAAAAGGAGGTTTCCTGATTTCCAAAGACACACTGAGTTCGCTGACATGTATCAGGGAGAAAAGCTCATTCAGGGATCTCTGCTGTATTACAAATTTTAATTTCTCCTGGCGTGGGAGTTCACAGCAGCCTTATGGA-GGGAAATTCCTCCAAGTCTGCGTGTCATAAACTGAACTACAGGGTTTAGGGTCCTCAGGCTGCCCAGGGATGCTGGAGGTCCACAGGTCAACTGCAGGGAGATGGATTCCCCAAATGAGCAAGAGGGTTCTGATGCTCAGGAAATAGATTAGTGGCTCCAGGCAGGNGTGGCTTCATGACCGCAAGAAAATGGAAGCAAAGAGTTGTTGGGCATGTAGAACTTTCATTTCT i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13280039 488 + 48394510 CAGGCACTGAGGTCCTGCCCGCAAATGGCGTGGTGACGTGGGGATATATTCGAAGGAAGGCAGAGAGGTGTCTGGATGGTCTGTTTTGATGC-AGCA----------TATGATGCAGGCAGCCTGAACTGAGAAAAGGAGGTTTCCAGATTTCCAAAGACACACTGAGTTGGCTGACATGTATCAGGGAGAAAAGTTCATTCAGGGATCTCCGCTGTATTACGAAGTTTCATTTCTCCTGGCGTGGGGGTCCACAGCAGCCTCGTGGAGGGGAAATTCCTCCCAGCCAGCATGTCATAAACTGAGCTACA-GGCTTAGGGTCCTCAGGCTGCCCAGGGATGCTGAAGGTCCACAGGCCAACTGCAGGGACAGGGATTCCCCAAATGAGCAAGAGGGTTCCGGTGCTCAGGAAATAGATTAGTACCTCCGGGCAGGTGTGGCTTCACGACCGTAAGGAAATGGACGCAAAGAGTTGCTGGGTATGTAGAACTTTTATTTCT i ponAbe2.chr21 I 1005 C 0 s rheMac2.chr3 158273809 457 - 196418989 CAGGCACCCAGGTCCTGCCTGCAAATGGCGTGGTAACGTGGGGGAATATTCGAAGGAAAACAGACAGGTGTCCGGATGGTCTGTTTTGTTGCAAGGAAGCGAACCAGCATGACGCAGG-----------------------------------------CACACCGAGTTCGCTGACACGTACCAGAGAGAAGAGCCCATTCATGGATCTCCGTCGTATTGCGAAGTTTAATTTCTCCTGGCGTGGGCGTGCACAGCAGCCTGGCGGA-GGCAAA-TCCTCGTAACCTGCGTGTCATAGATTGTGTTACAGGTTTTAGGGTCCTCGAGCCGCCCGGGGATGCTGGAGGTCCACAGGCCAATCTCAGGCAGAGAGAATTCCCAAATGAGCAGGAGGCTTCCGGCGCTCAGGAAACAGATTTGGAGCTCTGGGCAGGGGCGGCTTCACGATTGTAAGGAAATGGAGACAAACAGTGGTTGGGCATGCGGTACTTTTATTTCT i rheMac2.chr3 C 0 I 62 e panTro2.chrX 781474 1761 + 155361357 I a score=9653.000000 s hg19.chrUn_gl000239 30700 49 + 33824 TGCACATTTATTCAGAGACAGAGCATATGCATTTTTGGTAGAAA--------ATTCA s gorGor1.Supercontig_0000485 31688 49 + 32581 TGCACTTTTATTCAGAGACAGAGCGTATGAATTTTTGGTAGAAA--------ATTCA i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13280527 57 + 48394510 TGCACATTTATTCAGAGACACAGCATATGCATTTTTGTTGGAAGTACGTCTCATGCA i ponAbe2.chr21 C 0 C 0 e rheMac2.chr3 158274266 62 - 196418989 I e panTro2.chrX 781474 1761 + 155361357 I a score=18270.000000 s hg19.chrUn_gl000239 30749 50 + 33824 ATATTGCTGTTGATCTCAAATTCAAGTGTAGCTGGGCACACATGCATACA s ponAbe2.chr21 13280584 43 + 48394510 ATATTGCTGTTGATCTCGAAGTCAAGTGTAGCTGGGCACGCAT------- i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 31737 50 + 32581 ATATCGCTGTTGATCTCAAATTCAAGTGTAGCTGGGCACACATGCATACA i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 783235 49 + 155361357 ATACTGCTGTTTATCTCGAATTCA-CTGTACCTGGGCACGCATGCATACT i panTro2.chrX I 1761 C 0 e rheMac2.chr3 158274266 62 - 196418989 I a score=34614.000000 s hg19.chrUn_gl000239 30799 66 + 33824 GCTGTTAACCTTGAATTCAAGCGTACCTGGGC------------TGCTGTTTACTTTGAATTCAAGTGTATCTGGGCA s panTro2.chrX 783284 78 + 155361357 GCTGTTCACCTTGAATTCAAGTGTACCTGGGCATGCATCCATACTGCTGCTCACCTCGAATTCAAGTGTACCTGGGCA i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 31787 66 + 32581 GCTGTTTACCTTGAATTCAAGTGTACCTGGGC------------TGCTGTTTACTTTGAATTCAAGTGTATCTGGGCA i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13280627 40 + 48394510 -CTGTTC-------------------------------------TGCTGTTCACCTTGAAGTCAAGTGTACCTGAGCA i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158274328 66 - 196418989 GCTGTTTACCTCGGATTCAAGTGTCCCTGGGC------------TGCCGTTTATGTAGAATTCAAGGGTATCTGGGCA i rheMac2.chr3 I 62 I 13 a score=14709.000000 s hg19.chrUn_gl000239 30865 50 + 33824 TGCATGCATACTGCTGTTCACCTCGAATTCAAGTGTAGCTGAGCACACAT s ponAbe2.chr21 13280667 28 + 48394510 CGCATCCGTGCTGCTGTTTACCTTGAAT---------------------- i ponAbe2.chr21 C 0 C 0 s gorGor1.Supercontig_0000485 31853 50 + 32581 TGCATGCATACTGCTGTTCACCTCGAATTCAAGTGTAGCTGAGCACACAT i gorGor1.Supercontig_0000485 C 0 C 0 s panTro2.chrX 783362 50 + 155361357 TGCATCCATACTGCTGTTCACCTCAAATTCAAGTGTACCTGGGCATGCAT i panTro2.chrX C 0 C 0 e rheMac2.chr3 158274394 13 - 196418989 I a score=10438.000000 s hg19.chrUn_gl000239 30915 79 + 33824 CTGTTCTCCTGTTTATCTCGAATTCAAGTGTTATCTGGGCATGCCT-CGTGCTGCTGTTCACCTTGAAATCAAGTGTACC s panTro2.chrX 783412 34 + 155361357 CCATACTGCTGTTTATCTCGAAT----------------------------------------------TCAAGTGTACC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 31903 79 + 32581 CTGTTCTCCTGCTTATCTTGAATTCAAGTGTTATCTGGGCATGCCT-CGTGCTGCTGTTCACCTTGAAGTCAAGTGTACC i gorGor1.Supercontig_0000485 C 0 I 180 s ponAbe2.chr21 13280695 11 + 48394510 ---------------------------------------------------------------------TCAGGTGTACC i ponAbe2.chr21 C 0 C 0 s rheMac2.chr3 158274407 79 - 196418989 CTGTTCTACTGTTTATCTGGAATTCAAGTG-TACCTGGGCACACATGCATACTGCTGTTCCCCTCGAATGCAAGAGGacc i rheMac2.chr3 I 13 C 0 a score=43363.000000 s hg19.chrUn_gl000239 30994 57 + 33824 TGAGCACGCATCTGTTCTGCTGTTTATCTCGAATTCAAGTGTATCTGGGCATGCATC- s panTro2.chrX 783446 57 + 155361357 TGGGCACGCATCTGTTCTGCTGTTTATCTCGAATTCAAGTGTACCTGGGCATGCATC- i panTro2.chrX C 0 I 46 s gorGor1.Supercontig_0000485 32162 57 + 32581 TGAGCACACATCTGTTCTGCTGTTTATCTCCAATTCAAGTGTATCTGGGCGTGCATC- i gorGor1.Supercontig_0000485 I 180 C 0 s ponAbe2.chr21 13280706 57 + 48394510 TGAGCAGGCATCTGTTCTGCTGTTTATGTAGAATTCAAGTGTACCTGGGCACGCATG- i ponAbe2.chr21 C 0 I 1 s rheMac2.chr3 158274486 58 - 196418989 tgagcacacatctgttctgctgtgtatgtagaattcaagtgtacctgggcatgcatcc i rheMac2.chr3 C 0 C 0 a score=25159.000000 s hg19.chrUn_gl000239 31051 44 + 33824 GTGCTGATGTTTACCTCGAACTCAAGTGTAGCTGGGCACACATC s panTro2.chrX 783549 44 + 155361357 ATACTGCTGTTCACCTCGAATTCAAGCGTACCTGGGCATGCATC i panTro2.chrX I 46 T 89 s gorGor1.Supercontig_0000485 32219 44 + 32581 GTGCTGATGTTTACCTCGAACTCAAGTGTAGCTGGGCACACATC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13280764 44 + 48394510 ATACTGCTGTTCACCTCGAATTCAAGTGTACCTGAGCACACATC i ponAbe2.chr21 I 1 I 1 s rheMac2.chr3 158274544 35 - 196418989 gttccactgtttatctcgatttcaagtgtacctga--------- i rheMac2.chr3 C 0 C 0 a score=93173.000000 s hg19.chrUn_gl000239 31095 152 + 33824 GTGCTGCCGTTCACCTTGAATTCAAGTGTACCTGAGCATGCATCCATACTGCTGTTTATCTCAAATTCAAGTGTACATGGGCACGCATCTTTTCTGCTGTTTATCTCG---------------------------------------------AATTCAAGTGTAGCTGGGCACGTATGCATACTGCTGTTCACCTC s panTro2.chrX 783504 152 + 155361357 GTTCTGCTGTTTATCTCGAATTCAAGTGTACCTGGGCATGCATGCATACTGCTGTTCACCTCGAATTCAAGCGTACCTGGGCATGCATCCATACTGCTGTTCACCTCG---------------------------------------------AATTCAAGTGTACCTGGGCATGTATCCATACTGCTGTTCACCTC i panTro2.chrX T 89 C 0 s gorGor1.Supercontig_0000485 32263 197 + 32581 ATGCTCCCATTCACCTTGAATTCAAGTGTACCTGAGTATGCATCCATACTGCTGTTTATCTCAAATTCAAGTGTACCTGGGCACGCATCTTTTCTGCTGTTTATCTCGAATTCAAGTGTAGCTGGGCACGCATGCATAATGCTGTTCACCTCAAATTCAAGTGTAGCTGGGCACGCATGCATACTGCTGTTCACCTC i gorGor1.Supercontig_0000485 C 0 C 0 s ponAbe2.chr21 13280809 152 + 48394510 ATACTGCTGTTTATGTAGAATTCAAGTGTACCTGGGCACACATCCATACTGCTGTTTACCTGGAATTCAAGTGTACCTGAGCACACATCTGTTCTGCTGTTTATCTTG---------------------------------------------AGTTAAAGTAGAGCTGAGCACGCATCTGTTCTACCATTTATCTC i ponAbe2.chr21 I 1 C 0 s rheMac2.chr3 158274579 149 - 196418989 --gctgctgtttatgtagaattcaagtgtatctgaacacatatctgttctgctgtttatgtagaattcaagtgtacctgggcatgcatccgttccactgtttatctca---------------------------------------------aattcaagtgtagctgggcacacgtgcatactgctgttcacct- i rheMac2.chr3 C 0 I 1194 a score=88763.000000 s hg19.chrUn_gl000239 31247 143 + 33824 GAATTCAAGTGTACCTGAGCACGCATCTGTTTTGCTGTTTATCTCCAACTCAAATGTACCTGAGCATGCATCTGTTCTGCTGTTTACCTCGAATTCCACTGTACCTGGGTAGGCATGCCATACTTTTATTGGTTAACTAGAGC s panTro2.chrX 783656 143 + 155361357 GAATTCAAGTGTACCTGGGCACGCATCTGTTCTGCTGTTTATCTCCAACTCAAATGTACCTGAGCGTGCAACTGTTCTGCTGTTTACCTCGAATTCCACTGTACCTGGGTACGCATGCCGTACTTTGATTGGTTAACTAGAGC i panTro2.chrX C 0 C 0 s gorGor1.Supercontig_0000485 32460 120 + 32581 GAATTCAAGTGTACCTGAGCACGCATCTGTTTTGCTGTTTATCTCCAACTCAAATGTACCTGAGCATGCATCTGTTCTGCTGTTTACCTCGAATTCCACTGTACCTGGGTACGCATGCCA----------------------- i gorGor1.Supercontig_0000485 C 0 N 0 s ponAbe2.chr21 13280961 107 + 48394510 GAATTCAAGTGTACCTGAGCACACATCTGTTCTGCTGTTTATCTCCAACTCAAATATACCTGAGCACGCATCTGTTCTACCATTTATCTCGAATTCAAGTGTACCTG------------------------------------ i ponAbe2.chr21 C 0 N 0 s rheMac2.chr3 158275922 143 - 196418989 gaattcaagtgtatctgagctTGTCTCTGTTCTGCTGTTTATCTCCCACTCAGATGTACCCGAGCGTGCATCTGTTCTGCTGTTTACCTCGAATTCAAGTCTACTTGGGTACGCATACTGTACTTTTATTAGTTAACTGGAGC i rheMac2.chr3 I 1194 I 102 a score=7140.000000 s hg19.chrUn_gl000239 31390 90 + 33824 AATTTGTAAAGCAAACTATCATCATTTTCCCCAAGTTGTAACCCTTGGCAAATCATTTCCCCGAAGTTTCAACTTTGTTGAAATGGAAGC s panTro2.chrX 783799 90 + 155361357 GATTTGAAAAGCAAACGATCATTATTTTCCCCAAGTTGTAAGCCTTGGCAAATCATTTCCCCCAAGTTTCAACTTTGTTCAAATGGAAGC i panTro2.chrX C 0 C 0 e rheMac2.chr3 158276065 102 - 196418989 I a score=13682.000000 s hg19.chrUn_gl000239 31480 62 + 33824 TAAGAAATTCCACACAATGTATATATTCCTGGTAAAGTTTGCCCAGTACCTGAGCCAACACC s rheMac2.chr3 158276167 54 - 196418989 TAAGAAATTCCACACGATGTATATATTCCTGGTAAAGTTTGCCCAGTACCTGAG-------- i rheMac2.chr3 I 102 I 56 s panTro2.chrX 783889 62 + 155361357 TAAGAAATTCCACACCATGTATATATTCCTTGTAAAGTTTGCCCAGTACCTGAGCCAGCACC i panTro2.chrX C 0 C 0 a score=32189.000000 s hg19.chrUn_gl000239 31542 147 + 33824 TAGGGAGGTAAGAGCAGACAGTGGAGGTTGGGGTACAGACAGATTTGGGTGACCCAGACCAAATCTGATCTTCTAGAACCAACAAATCCCACAGAGACAGGACAAATTGGCCTGTTTGGGGCCAGCATCCTGCGGGATCCCAGACGC s rheMac2.chr3 158276277 147 - 196418989 TAGGGAGGTCAGCTCAGACAGTGGAGGGTGGGGTGCAGACGGATCGGGGCGACCCAGACCAAATCCGATCTCCTGGAACCAAGAGATGCCACAGAGACAGGACACATCGGCCCGACGGGGGCCGGTTTGCTGCGGGATCCCGGACGC i rheMac2.chr3 I 56 N 0 s panTro2.chrX 783951 147 + 155361357 TAGGGACGGAAGGGCAGACAGTGGAGGTTGGGGTGCACACAGATTTGGGTGACCCAGACCAAATCTGATCTCCTAGAACCAAGAGATCCCACAGAGACAGGACAAATTGGCCTGTTTGGGGCCGGCGTGCTGCGGGATCCCAGACGC i panTro2.chrX C 0 N 0 a score=2524.000000 s hg19.chrUn_gl000239 32202 71 + 33824 TTTTAATGTTCTAACCTAATGTCGAGCAATTTCAGTTGATTTTTTCATAAGCTGGAAGGTCCATGAAATCT s micMur1.scaffold_1088 6796 67 - 360413 TTTTAATGCCCTAAC----TGTGAAGACTCTTCAGTGGGGTTTTTCATGACTTGGAAGATAACTGAAGTCT i micMur1.scaffold_1088 N 0 C 0 a score=25930.000000 s hg19.chrUn_gl000239 32273 244 + 33824 CTTTCTATGGCCATTATTTTCTCAAACACTGCAGTGTCTTTTTT-----------------CAGTGTTTT-CCATATATAATGATATTCCTAGGAATATCTC-CTTGGCCTTCCTATCTAAATTCACCCAATGTGGTGTTCTTCATATTTCAAGTAAATTCAATACTGCCTTCATAATTGTTGGCACCTTTAAACTTTTATTGTCCCTGATAGGTAGGTGCTCATCTTATTGGTTAAATGAATGA-TTTTGGCAATTTCGCTTT s micMur1.scaffold_1088 6863 263 - 360413 TTTTCTATGATCGTATCTTTCTTAAAC-TTGCAGTCTTCCCCTCAACCCCCGCCACCCGCGCGATGTTTTCCCATCTATGAATTTATTCCTAGGAATTTCTCTCTTGGCCTTCCTATCTGAATTCACGCTGTGTGGTGCTCTCCACCTTTCAAGTGAGTTTAGTACTGCCATCATAATTGTTGGCACCTTCAAACTTTTATGGTCCCTGGCAGGTAGGTGGTCATTACACTGGTTGAATGAATGGTTTGCTGCGATTTCACTTT i micMur1.scaffold_1088 C 0 N 0 s otoGar1.scaffold_100891.1-157761 79451 204 - 157761 CCCTCTATTGCCATATCTTACTTCA---CTGCAGTCTTTTT--------------------CAGGGTTTTCCCA------------------------TCTCTCTTGGCCTTGCTGTCTGAATTGATGCGGT---GTGTCCTCCGCATTTCAAGTGAATTTAGCACTGCCATTGTGATTGTTGGCACCTTT-AACATTTATGGTCCCTGATAACTA-GTGCTCATTATGATGGTTG-ATGAATGA-TTACGGCAGTTT------ i otoGar1.scaffold_100891.1-157761 N 0 N 0 a score=-148.000000 s hg19.chrUn_gl000239 32971 4 + 33824 ATGA a score=100.000000 s hg19.chrUn_gl000239 33043 1 + 33824 C a score=86.000000 s hg19.chrUn_gl000239 33075 3 + 33824 GGG a score=23.000000 s hg19.chrUn_gl000239 33099 15 + 33824 GGCTCCGTGGTCTCC a score=351.000000 s hg19.chrUn_gl000239 33152 5 + 33824 AAGAG a score=369.000000 s hg19.chrUn_gl000239 33201 5 + 33824 GGGCG a score=163.000000 s hg19.chrUn_gl000239 33210 6 + 33824 TTCCCA a score=100.000000 s hg19.chrUn_gl000239 33226 1 + 33824 C a score=-186.000000 s hg19.chrUn_gl000239 33248 27 + 33824 CCTTGAACAAGAATTCCCTGCTCTCCC s eriEur1.scaffold_327483 8211 25 - 9013 CTCTGGCCAAGAG--CCGTGCTCTCTC i eriEur1.scaffold_327483 N 0 C 0 s ornAna1.Contig283 200784 4 + 992865 -----------------------Tccc i ornAna1.Contig283 N 0 N 0 a score=812.000000 s hg19.chrUn_gl000239 33275 98 + 33824 GCTGAGA--GCCAGGGT-------GGGTCCTCTGTCCC--------------TCACCAT---------GAAGTTCAATGAGTATTGGAGAG-TCCGCAT----GAGGTGAAGGGGCTTCAGCCCAACCACTGGT-C s eriEur1.scaffold_327483 8236 136 - 9013 GCTGCGACCTCCGGGGGACTCCGAGGGGCCCCGGGCCAGCGGCGCCGGCATGTCGTCGTCGGGCCACAGGAGGTCAATTGCTACTTGAGAGTTTCGCGTCGGCGAGGCGGTGGGGCTGCAGCCCACTCGCTGGTCC i eriEur1.scaffold_327483 C 0 I 96 a score=0.000000 s hg19.chrUn_gl000239 33373 15 + 33824 CCTGCTGCACTCACT e eriEur1.scaffold_327483 8372 96 - 9013 I a score=29.000000 s hg19.chrUn_gl000239 33388 3 + 33824 CCT e eriEur1.scaffold_327483 8372 96 - 9013 I a score=0.000000 s hg19.chrUn_gl000239 33391 67 + 33824 CAAAAAGGACCACCAGCTGCCTGATGGTGAGCATGGAGCAGGTCTGAGTGGACCAGACTAGGGCCAA e eriEur1.scaffold_327483 8372 96 - 9013 I a score=100.000000 s hg19.chrUn_gl000239 33458 1 + 33824 G s eriEur1.scaffold_327483 8468 1 - 9013 G i eriEur1.scaffold_327483 I 96 N 0