##maf version=1 scoring=autoMZ.v1 a score=80037.000000 s hg19.chrUn_gl000243 4450 1233 + 43341 aacaatcagaccacagcaggaatgttctggaatcctatgtgaggggcaaacattcagaccacagcaggagtgctctgtaatcctatgtgagggacaaacatttcaaaacctcgtagcagtgtgctggaatgttatgtcagggacagacatttagaccctcgcagcagtgttctagaatctcatctgcaggacaaacattcagacactcgcagcagtgttctggaattctatgtgagggaca----ttcaaaccccaacagcagtgttctagaatcctatgtgaggaacagacgttcagaccccagcagcagtgttctggaatcctatgtgaggtacaaacattcagataccagcagaagtgttctggaatcctatgtgagggacaaacattcagaccctcgtagcactgttctggaatcctatgtgaatggcaaaaattcagaccatggcaacaatgctcaggaatcctatgtgagggacaaacattcagaccctcctagcagtgttctggaatcttatgtgagggacaaatattcaaaccacagcagcagtgttctggaatcctatgtgaatgacaaactttcagaccacagcaggagagttctggaatcctatgtgagggacaaactttcagacaaaagcaggagtgttcttaaatcctatatgaaggacaaatattcagaccccaggaacactgttctgaaatcctatgataagggcaaacattcagaccccaacatgaatgttctggaatcctatgtgagggacaagcattaagaccatagcaggagtattctggaatcctatgtgagggacaaacattcagacccttgtagcagtgttctggaatcctatgtgattaacaaacattgagaccacagcaggagtgctctggaatcctatgtgagggacaaacattcagacaccagaaggagtgttctggaatcctatgtgaaggacagacatttagaccctcgaagcagtgttctgcagtcttaagtgaggaacaaaaattcagaccctagtaacagtgttctggaatccttttttgagggacagacattgagacctcagcagcagtggtctggtatcctatgtgagggacaaacattcactcccc-agcaacagtgttctgtaatcgtatgtgagggacaagcattcagaccccagcagcagtgttctggaatcttatgtgagggacaaacattgagaccctcgtagcagtgttctggaatcc s panTro2.chr4_random 1092836 1229 - 6711082 aacattcagaccccaacatgaatgttctggaatcctatgtgagggataagcattaagaccatagcaggagtattctggaatcctatgtgagggacaaacatt-cagacccttgtagcagtgttctggaatctgatgtgattaacaaacattgagaccacagcaggagtgctctggaatcctatgtgagggacaaacattcagaccccagaaggagtgttccggaatcctatgtgaaggacaaacattcagaccctcgtagcagtgttctggaatcctatgtgagggaaaaacattcagaacacagcaggagtgctcgggaatcctatgtgagggacaaactttcagaccaaagcaggagtgttcttaaatcctatatgaaggacaaacattcagacctcaggagcactgttctgaaatcctatgataagggcaaacattcagaacccaacatgaatgttctggaaccctatgtgagggacacgcattaagaccatagcaggagtattctggaatcctatgtgagggacaaacattcagaccccagaaggagtgttctggaatcctatgtgaaggacaaacattcagaccctcgtagcagtgttctggaatcctatgtgagggacaaacattcagaccctcccagcagtcttctggaattctatgtgagggacagacattcaaaccccagcagcagtgttctggaatccgatgtgagagacagacattcagaccccagcagcagtcttctggaatcctatgtgagggacaaactttcagaccctcatagcagtgttctggaatcctatgtgacgtacaaacattcagaccctcatagcagtgttctggaatactatgtgagggacaaccattcagaccatggcag-----ttctgaaatgctatgtgaaggacaaacattcagaccctcgtagcagtgttctggaatcatatgtgaaggagagacatttagaccctcgaagcagtgttctgcagtcttaagtgagggataaaaattcagaccctcgtaacagtgttctggaatccttttt-gagggacagaccttgagaccccagcagcagtggtctggtatcccatgtgagggacaa-cattcactcccccagca-cagtgttctgtaatcgtatgtgaaggacaagcattcaaaccccagccacagtgttctggaatcttatgtgaagggacaaccttgagaccctcgtaacagtgttctggaatcn i panTro2.chr4_random N 0 I 124 a score=0.000000 s hg19.chrUn_gl000243 5683 75 + 43341 tacgtgagacacaaacattcgtaccacagcagaagtgttctggaatcttatgtgagggacaaccattcagaccac e panTro2.chr4_random 1094065 124 - 6711082 I a score=186989.000000 s hg19.chrUn_gl000243 5758 2894 + 43341 agcaggagtgttctggaatcctatgtgagggacaaccattcagaccacagcaggagtgttctggaatcctatgtgagggacaaatattcagaccctcatggcagtgttctggaatcctttgtgagggacaaacattcacaccccagcaacactgttctgtaatcgtatgtgagggacaagcattcagaccccagcagcagtgttctggaatcttacgtgaggggcaaacattgagaccctcgtagcagtgttctggaatcctacgtgagacacaaacattcgtaccacagcagaagtgttccggaatcttatgtgaggg-acaaccattcagatcacagcaggagtgttctggaatcctttgtgagggacaaccattcagaccacagcaggtgtgttctggaatcctatgtgagggacaaatattcagaccctcatagcagtgttctggaatcctttgtgagggacaaacattcagaccccaggtggagggttctggaatcctgtgtgagggaccaacattcagaccctcgtagcagtgttctggaatgctatgtgaaagacaaccattcagaccctcatagcaatgttctggaatcctatgtcagggacattcagagcccagccgcagtgttctggaatcctatgtgacagacaaacattcagaccacagcaggagcgttctggaatcctatgtgacggacaaacgttcagaccatagcagtagtgttctgcaatccaatgtgagggacaaacattcagagcccagcagcagtgttcaggaatcctatgtgagggaccaacaatcagaccctcgtagcagcgttctgaaatcctatgtgagggacaaacattcagaacccagctgcagtgttctggaatcctatgtgacagaaaaacattccgaccacagcagcagtgttctggaatcctatgtgcggtacaaactttcagaccacagcaggagagttctggaatcctatgtgagggacaaactttcagaccccaggagcagtgttctgaaatcctatgttaagggcaagcatttacatcccagcgtgaatgttctcgaatcctaggtaagggacaaacattcagaccacagcaggagtgttctcgaatcctatgtgaggaacaaacattcagaccacagaaggagtgttctggaatactatgtgagggac----attcataccctcttaggagtgttctggagtcctatgtgatgaacaaactttcagaccacagcaggagtgttctggaatcctatgtgagggtcaaacattcagaccccagcagtagtgttctggaatcctatgtgagg-gcaaacattcagacc-cacgtggcagtgttctggaatcctatgtgagggacaaacattcagaacctcgtagcagtgtcctgaaatcttatgtgagggagagacatttagaccctcgcaacagtgttctggtatcccatgtgagggacaaacattcagaccctcccagccgtgttctggaattctatgtgagggaaagacattcaaaccccagcagcagtgctctggaatctgatttgaggggcagacattcagaccccagcagcagtgttctggaatgctatgtgaaggacaaacattcagaccacgggagcagtgttctagaatcctacgtgaaggacaaacattaagactctcatagcagtgtcctggaatcatatgtgaggaacaaccattcagacaccagcagaagtgttctggaatcctaggtgtgggaaaaacattcagaacctagtagcagtgttctggaatcctatgtgagggacatacattcagaccacggcagcagtgttctggaatggtatgtgaaggacaaacattcagacccttgtagcagtgttccggaattctatgtgagggacaaacattcagaccacagcatcagtgttctggaatcctatatggcagaccaacattcagacccttgcaacagtgttctggaatactaggtgagggagaaatagtcacacccttgtagcagtgttctggaattctatgtgactgacaaacattcagactccagcagcagtgttctgtaatcctatgtgagcgacaaacattcagaccccaagggcagtgttctgaaatcctatgttaaggg-aaatattgagaccccagcatgaatgttctggaatcctatgtgagggacaaacattcagaccacggcaggagtattctggaatcctatgtgaggaacaaacattcagaccacagcagaagtgttctggaatcctatatgagggataagcattcagaccctcgtagcagtgttctggaatcctatgtgagggagaagcattcagagcacagcaggagtgctctggaatcctatgttagggacaaacattcagaacctcgtaacattgttcgggaatcctgtgtgagggacagacatttagacactcgcagcagtgttctggaatcccatgtgagggtcaaacattcagatcctcacagcagtgttctggaattctatgtgagtgacaaccattcagactccagcagcagtgttctgtattcctatgtgaaggacaaacattcagaatccaggagcagtgttttgaaatcatatgttaagggcaaacatacagaccctagcatcaatgttctagaatcatatgtgagggacagacattcagaccctcgcagcagtgttctggaatcctagatgggggacaaacattcagaccccagcagcaggcttctggaatcctatgtgggggacaaacattcagacaatggcagcagtgttctggaatcctacgtgagggacaaacactcagagccttgtagcagtgttctggaatcctatgtgagtgaGAGTGCCTGGAGCCTACCCAACCTGACGCCCCCAAAGCCT s panTro2.chr4_random 1094189 2801 - 6711082 cgaagcagtgttctgcagtcttaagtgagggataaaaattcagaccctcgcaacagtgttctggtatcctatttgagggacagacattgagaccccagcagcagtggtctggtatcctatgtgagggacaaacattcactccccagcaacagtgttgtgtaatcgtatgtgagggacaagcattcagaccccagcagcagtgttctggaatcttatgtgagggacaaacattgagaccctcgtagcagtgttctggaatcctacgtgagacacaaacattcgtaccacagcagaagtgttctggaatcttatgtgaggggacaaccattcagaccacagcaggagtgttctggaatcttatgtgagggacaaccattcagaccacagcaggagtgttctggaatcctatgtgagggacaaatattcagaccctgatagcagtgttctggaatcctttgtgagggacaaacattcactccccagcaacagtgttctgtaatcgtatgtgagggacaagcattcagaccccagcagcagtgttctggaatcttatgtgagggacaaacattgagtccctcgtagca--------------------------------------------gtgttctggaatcctacgtgagacacaaacattcgtaccacagcagaagtgttccagaatcttatgtgagggacaaccattcagatcacagcaggagtgttctggaatcctttgtgaggaacaaccattcagaccacagcaggtgtgttctggaatcctatgtgagggacaaatattcagaccctcatagcagtgttctggaatcctttgtgagggacaaacattcagaccccagcaggagggttctggaatcctgtgtgagggaccaacattcagaccctcgtagcagtgttctggaatgctatgtgaaagacaaccattcagaccctcatagcaatgttctggaatcctatgtcagagaca----ttcagaccccagccgcagtgttctggaatcctatgtgacagacaaacattcagaccacagcaggagcgttctggaatcctatgtgacggacaaacgttcagaccatagcagtagtgttctgcaatccaatgtgagggacaaacattcagagcccagcagcagtgttcaggaatcctatgtgagggaccaacaatcagaccctcgtagcagtgttctgaaatcctatgtgagggacaaacattcagaacccagccgcagtgttctggaatcctatgtgacagaaaaacattccgaccacagcagcagtgttctggaatcctacgtgcggtacaaactttcagaccacagcaggaagagttgtggaatcctatgtaagggacaaactttcagaccccaggagcagtgttctgaaatcctatgttaagggcaagcatttacatcccagcgtgaacgttctcgaatcctaggtaagggacaaacattcagaccacagcaggagtgttctcgaatcctatgtgaggaacaaacattcagaccacagaaggagtgttctggaatactatgtgaagg----acattcataacctcttagcagtgttgtggagtcctatgtgatgaacaaactttcagaccacagcaggagtgttctggaatcctatgtga---------------------------gtgtc---------------------aaacattcagaccccagcagtagtgttctggaatcctatgtgagggcaaa-cattcagacccacgtggcagtgttctggaatcctatgtgagggacaaatattcagaccacagcaggagtgctctggaatcctttgtgagggacaaacattcagaacctcgtagcagtgtcctgaaatcttatgtgagggagagacatttagaccctcgcagcagtgttctggtatcccatgtgagggacaaacattcagaccctcccagccatgttctggaattctatgtgagggaaagacattcaaaccccagcagcagtgctctggaatctgattagaggggcagacattcagaccccagcagcagtgttctggaatgctatgtgaaggacaaacattcagaccacgggagaagtgttctagaatcctatgtgaaggacaaacattaagactctcgtagcagtgtcctggaatcatacgtgaggaacaaccattcagacaccagccgaagtgttctggaatcctaggtgtgggaaaaacattcagaacctagtagcagtgttctggaatcctatgtgagggacatatattcagaccacggcagcagtgttctggaatggtatgtgaaggacaaacattcagacccttgtagcagtgttccggaatcctatgtgagggacaaacattcagaccacagcatcattgtgctggaatcctatatgagggaccgacatttagacccttgcaacagtgttctggaatcccatgtgagggtcgaacattcagatcctcacaacagtgttctggaattctatgtgagtgacaaccattcagactccagcagcagtgttctgtattcctatgtgaaggacaaacattcagaatccaggagcagtgttttgaaatcatatgttaagggcaaacatacagaccctagcatcaatgttctagaatcatatgtgagggacacacattcagaccctcgcagcagtgttctggaatcctagatggaggacaaacattcagaccccagcagcaggcttctggaatcctatgtgggggacaaacattcagacaatggcagcagtgttctggaatcctacgtgagggacaaacactcagagccttgtagcagtgttctggaatcctatgtgagtgaGAGTGCCTGGAGCCTACCCAACCTGACGCCCCCAAAGCCC i panTro2.chr4_random I 124 C 0 a score=23893.000000 s hg19.chrUn_gl000243 8652 87 + 43341 TCACAGGGTCTGACCTCCCAGCATGCACCTGCCTCTCCCTGAACCCCAACTGCCCACCCTGCCTTTTCCCTG----GCCTCCTCCATCCTG s calJac1.Contig17068 17049 87 - 19141 TCACAGTGCCTGACCTCCCAGCATGCACCTGCCTCTCCCTACACCCCAGCAGCCCACCCTGTCTGTTCCCTG----GCTCCCTCCACCCTA i calJac1.Contig17068 N 0 C 0 s panTro2.chr4_random 1096990 87 - 6711082 TCACAGGGTCTGACCTCCCAGCCTGCACCTGCCTCTCCCTGAACCCCAACTGCCCACCCTGCCTGTTCCCTG----GCCTCCTTCATCCTG i panTro2.chr4_random C 0 C 0 s tetNig2.chr4 915120 72 + 9874776 -----------------CCAGCATCCATCAACCCCTTCCTGGCCTCCTACTGGCCATC--GTCGTACTTCTGAAGCGTCTCCTGCAGCTTG i tetNig2.chr4 N 0 N 0 a score=72881.000000 s hg19.chrUn_gl000243 8739 342 + 43341 TGCAGCCCATAGACTGTGACCATCTCTCCAGCCACTCTGGCCCTTCCTTTACCTTTGTCCTGTCAGAATCTCTGAGCAGGATCTCCCAGGTCCATCCAAATACGTGCTTTGTCCACTTTTGACTAGGCCCTTGGGCATCACTGGGCTATCCCAGCTGTCCACAGGGCCTTCAATAATGCACATTGCACCTGGCTTATCCAAGCAGTGCTCAGCAGCCCAcattgaccaggtccctgctgaccagaccccacacatcaggtcctccctgatgacaccctcactgattagaccctcatgaccaggccccactaacaaggccCCCACTGCCAGGCCCAcaatgac s panTro2.chr4_random 1097077 342 - 6711082 TGCAGCCCATAGACTGTGACCATCTCTGCAGCCACTTTGGCCCTTCCTTTACCTTTGTCCTGTCAGAATCTCTGAGCAGGATCTCCCAGGTCCATCCAAACACGTGCTTTGTCCACTTTTGACTAGGCCCTTGGGCATCACTGGGCTATCCCAGCTGTCCACAGGGCCTTCAATAATGCACATTGCACCTGGCTTATCCAAGCAGTGCTCAGCAGCCCAcattgaccaggtccctgctgaccagaccccgcacatcaggtcctccctgatgacaccctcactgattagaccctcatgaccaggccccactaacaaggccCCCACTGCCAGGCACAcaatgac i panTro2.chr4_random C 0 C 0 s calJac1.Contig17068 17136 330 - 19141 TGCGGCCCATAGACTCTGGCCATCTCTCTGGCCACTCTGGCCCTTCCTTTACCTTTGTCCTGTCAGAATCTCTGTGCAAGATCTC----------CCAAACACCTGCCTTGTGTACTTTTAACT-GGCTGCTGAGCACCACTGGGCCAGCTCAGCTGTCCACAGGGCACTTCATAACTCACATTGCCCCTGGCTCTTGC-AGCAGTGCTGGGTAACCCCCACTGCCCAGGTCCCTCCTGACCAGACTCCACACATCAGGTCCTCCCTGACCATGTCCTCACTGATTACACCCCCTTCCCCAAGCCCTaccgaccaggccccaactgccaggctctcaatgac i calJac1.Contig17068 C 0 I 600 a score=27949.000000 s hg19.chrUn_gl000243 9081 312 + 43341 aaggactccactgaccaggaccttactgacaaggactcactgacaaggcctcacggaccaagtccttactgacaagtcctcactgagtaggtcattattgacaaggcctcactgatcaagttccactgatcatgacctcattccctggccccaaagatgaggccccactgaccagacctCCAGGGAACAGGTTGCCACTGATCAGGCCCCTAATAACCAGGCCTAAGATCACCAGATGCCCCTGACTGGGACCCTAGTGAGTAGACCCCACTGAACTGGCACCAAATGCTGAGATCTCCGCTGACCAGGTCA s panTro2.chr4_random 1097419 312 - 6711082 aaggactccactgaccaggaccttactgacaaggcctcactgacaaggcctcacggactaagtccttactgacaagtcctcactgactaggtcattattgacaaggcctcactgatcaggttccactgatcatgacctcattccctggccccaaagatgaggccccactgaccaggcctCCAGGGAACAGGTTGCCACTGATCAGGCCCCTAATAATGAGGCCTTATGTCACCAGATGCCCCTGACTGGGACCCTAGTGAGTAGACCCCACTGAACCGGCACCAAATGCTGAGATCCCCGCTGACCAGGTCA i panTro2.chr4_random C 0 C 0 e calJac1.Contig17068 17466 600 - 19141 I a score=5680.000000 s hg19.chrUn_gl000243 9393 64 + 43341 CCCTGTAGACCAGTGCTGCAAAAGTCACcactgaccaagtcgtctctgaccaggatgctacaga s panTro2.chr4_random 1097731 64 - 6711082 CCCTGTAGACCGGTGCTACAAAAGTCACcattgaccaagtcctctctgaccaggacactacaga i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_333 1141496 60 + 1332337 CCCCCTACCACAGTGCCCCCTAACTCTATACTGGCCAGGGCCCCCCTAACTC-TATGCTGG--- i xenTro2.scaffold_333 N 0 C 0 e calJac1.Contig17068 17466 600 - 19141 I a score=87890.000000 s hg19.chrUn_gl000243 9457 358 + 43341 ttaggtcccgctgacaaggctgccctgaccagggcccc-----------actgacaagggcctcactgatgaggACATGCCCACCAGGGTC------------TGCTGACTAGGTCCCATGTGCCCAGTCCTCCACTGAATAGCACCCCTTGACC----TGGTCACCAGTGCCCC----AGCCCATGCTGACCAGGCCAGCACTAAGCCCCAGCTGACCAGGTCTCCACTGATCAAGCCCCACAGCCCAGGTTTGCACTGACCAGACACCAAACAACTGGCAGCCAATAGGTCCCCACTCACCAAAACCCC-ACTA-------------CTAGACCCcactaatg-----------agaccctctctaagcagacccctgctgaccacgatcccactaaatagtcctcactgac s panTro2.chr4_random 1097795 359 - 6711082 ttaggtcccgccgacaaggctgccctgaccagggcccc-----------actgacaagggcctcactgatgaggACACGCCCACCAGGGTC------------TGCTGACTAAGTCCCATGTGCCCAGTCCTCCACTGAATAGCACCCCTTGACC----TGGTCACCAGTGTCCC----AGCCCATGCTGACCAGGCCAGCACTAAGCCCCAGCTGACCAGGTCTCCGCTGATCAAGCCCCACAGCCCAGGTTTGCACTGACCAGACACCAAACAACTGGCAGCCAATAGGTCCCCACTCACCAAAACCCCCACTA-------------CTAGATCCcactaatg-----------agaccctctctaagcagacccctgctgaccacgatcccactaaatagtcctcactgac i panTro2.chr4_random C 0 C 0 s calJac1.Contig17068 18066 358 - 19141 ttaggttctgctgaccaggctgccccaaccaggtctcc-----------actgatgagggcctcactgatgaggACACACCCCGCAGATCC------------TGTTGACTAGGTCCCATGTGACCAGGCCTCCACTGAATAGGACCAGTTGACC----TGGTCACCAGTGACCC----AGCCCATGCTGACAAGGCCACCAGTAAGCCCCACATGACCGGGTTTCCACTGAGCAAGCACCGCAGCCCAGGTTTGCACTGACCAGACATGAAATAACCAGCTGCCACTAAATATCCCCTCACCAACACCCC-ACTA-------------CTAGGTCCCCCTGATG-----------AGGCCCTCTCTAAGCAGACCCCTGctgaccaggcccccactaaataggcctcactgac i calJac1.Contig17068 I 600 N 0 s xenTro2.scaffold_333 1141556 391 + 1332337 TTAGGGCCCTCC--TAACTCTATGCTGGCCAGGGCCCCCCTAATGCTATGCTGGCCAGGGCCCCCCTAAT---GCTATGCTGGCCAGGGCCTCCCTAACGCTATGCTGGCCAGGGCTCCT---CCTAACACTATGCTGGCCAGGGTTCCCCTAACGCTATGCTGGCCAGGGCCCCCCTAACGCTATGCTGGCCAGGGCCTCCCTAAGGCTATGCTGGCCAGGACTCCCCTAAT---GTTATGCTGGCCAGGGCC-CGCTAACGCTATGCTGGTCA---GGCCCCCCCCAACTCTATGCTGGCCAGGGCCTC-CCTAACGCTATGCTGGCCAGGGCCCCCCTAATGCTATGCTGGCCAGGGCTCCCCTAACGATA----TGCTGGCCAGGGCCTCCCTA---ATGCTATGCTGAC i xenTro2.scaffold_333 C 0 C 0 a score=6725.000000 s hg19.chrUn_gl000243 9815 44 + 43341 ctaggtccactgaccaggcccacactgatcaggtcCCTCCTaac s panTro2.chr4_random 1098154 44 - 6711082 ctaggtccactgaccaggcccacactgatcaggccCCTCCTaac i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_333 1141947 41 + 1332337 -CAGGGCCCCC--CAAAGGCTATGCTGGCCAGGCCCCCCCCAAC i xenTro2.scaffold_333 C 0 N 0 a score=3085.000000 s hg19.chrUn_gl000243 9859 35 + 43341 cacaccggaaatccaagcggcaatgacatgtttca s panTro2.chr4_random 1098198 35 - 6711082 cacaccggaagtccaagtggcaatgacatgtttca i panTro2.chr4_random C 0 C 0 a score=314119.000000 s hg19.chrUn_gl000243 9894 1224 + 43341 tatggcagaagttggaacaagacagagagaggaaagaggttccacagccttttaaactactagatctcatgagaactcactcactatcaggaggatggcattaagggcttggtgctttgccat---ttgtgaaggatccactcccacccctttatgattaaagctttttccacctaggcaccgactctaacattagggagtgtactttcacatgagttttggaaggggcatagagaaaaaccgtattattctgtccctgaccccacaaatctcatgtccttctcacattgcaaaatacagtcatgccttgccagcagtctcccaaagtcttaactcatttcagcattaactcaaagttacaaagtccaaagtctcatctgggtcaaggctacattctcttttgcctacgagtctctgaaataaaaagcaagttcactgtgtctaaggtacaatgatggtacaggcattgtgtaagctttctatatccaaaagagagacattttccagaaagcttcttatttttatctgaggccccctcagcctggccttcactgtccatgtttttgtcagcattcttgtcacagccatttaaccagtctctaagatggtccaaaaatgttctcatctgtctgtcttctttggatccctccaaactcttccaacctctacccattacccagttccgaagttgcttccacattttcaggtatctttataggaatgctccagtcctcaTTTGCCATTTTTGGTAAGATTTATTTTGAaaaagaggtttaattggctcatggttctgcagagtggacaggaagcttagtgcttctgcttctgggggg--cctcagaaatctttcaatcattgtgcaaggtaatgaaagagtgaattgtctcacatggcaagaggaaatcacggagagtagggagtgatatagagttttcagtggccagatctcacgagaagtcactcatgattgtgaggacagtaccaaggggatggtgctgaaccactcatgagaaatttgccttcatgattcaatcaccttataccaggatccacctccaacattaggaagcataactcaacatgagatttggtggggacacatattcgaaTTGCCTCATCAGTCTTTGAGTATAAAGACATCCATAGCAGGCTTTATCCAGCCAGCTTCTTTGGGGTTCTTTATAGGGTTTCTGGTCTATAGCATATCCACTAAAATATTCCTACTTCAA s panTro2.chr4_random 1098233 1224 - 6711082 tatggcagaagttggaacaagacagagagaggaaagaggttccacagccttttaaactactagatctcatgagaactcactcactatcaggaggatggcattaagggcttggtgctttgccat---ttgtgaaggatccactcccactcctttatgattaaagctttttccacctaggccccgactctaacattagggagtgtactttcacatgagttttggaaggggcatagagaaaaaccgtattattctgtccctgaccccacaaatctcatgtccttctcacattgcaaaatacagtcatgccttgccagaagtctcccaaagccttaactcatttcagcattaactcaaagttacaaagtccaaagtctcatctgggtcaaggccacattctcttttgcctacgagtctctgaaataaaaagcaagttcactgtgtctaaggtacaatgatggtacaggcattgtgaaagctttccatatccaaaagggagacattttccagaaagcttcttatttttatctgaggccccctcagcctggccttcactgtccatgtttttgtcagcattcttgtcacagccatttaaccagtctctaagatggtccaaaaatgttctcatctgtctgtcttctttggagtcctccaaactcttccaacctctacccattacccagttccgaagttgcttccacattttcaggtatctttatagcaatgctccagtcctcaTTTGCCATTTTTGGTAAGATTTATTTTGAaaaagaggtttaattggctcatggttctgcagagtggacaggaagcttagtgcttctgcttctggggggggcctcagaaatctttcaatcattgtgcaaggtaatgaaagagtgaattgtctcatatggcaagaggaaatcacggagagtagggagtgatatagagttttcagtggccagatctcacgagaagtcactcaggattgtgaggaaagtaccaaggggatagtgctgaaccactcatgagaaatttgccttcatgattcaatcaccttataccaggatccacctccaacattaggaagcataactcaacatgagatttggtggg--cacatattcgaaTTGCCTCATCAGTCTTTGAGTATAAAGACATCCATAGCAGGCTTTATCCAGCCAGCTTCTTTGGGATTCTTTATATGGTTTCAGGTCTATAGCATATCCACTAAAATATTCCTACTTCAA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4706819 1223 + 72422247 tatggcaggagtaggagcaagacagagtgaggaaagaggttccatggccttttaaactactagatctcatgagaactcactaactatcaggaggatggcattaagggcttggtgctttaccatttgttgtgaaggatccacttccacccctttatgattaaatctttttccacctaggccccgactctaatattagggactgtaatttcacatgagttttggaagaggcatagagaaaaaccatattattctgtccctgaccccacaaatctcatgtccttctcacattgcaaaatacagtcatgccttgccagcactctcccaaagtcttaactcatttcaacattaactcaaagttacaaagtccaaagtctcaactgggtcatggctacattctcttttgcctgtgagtctctgaaataaaaagcaagttcactgcttccaaggtacagtgatggtacaggcattgtggaaggtttccatatccaaaaggaagacattttccagaaagcttgttatttttatctgaggcctcctcagcctggccttcactgtccatgtttctgtcagcattcttgtcacaaccatttaaccagtctctgagatggtccaaaaatgttctca----tctgtcttcttttgagccctccaaactcttccaacctctgcccattacctggttccaaagctgcttccacattctcaggtatcttcacagcaatgctccaatcctcaTTTGCCATTTTTGGTATGATTTATTTTGAaaaagaggtttaatttgctcatggttctgcagggtggacaggaagcacagtgcttctgcttctgggggg--cctcagaaatctttcaatcattgcacaaggcaaagaaagagtgaattgtctcacatggcaagaggaaatcatggagaataggaagtgatatagagttttcagtggccggatctcatgagaagtcactcatgattgtgagaacagtaccaaggggatggtgctgaaccattcatgagaaatttgccttcatgattcaatcaccttataccaggatccaccttcaacataaggaagtataactcaacgtgagattcggtggggacacatatttgaattgcatcaTCAATCTTTGAGTATAAAGACACCCACAGCAGGCTTTATCCAGCCAGCTTCTATGAGACTATTTATAGGGTTTGAGGTCTATAGCATATCCACTAAACTATTCCTACTTCAA i ponAbe2.chrUn N 0 C 0 a score=68964.000000 s hg19.chrUn_gl000243 11118 254 + 43341 AAGGCAATAAAGTAAGTGGTATTATCATTCTTCAAAA-AGTTATAATGGTAGTGTAGGCATTCATAGTATGATTTAGTT---CATTTGCTA--CTGTTTCTATTCTATCACCATA--------TTAACACTTTCCTACACAAGTCTATATTCAGCTGGGTTTCAGTTGAGCACAAAGTCATCCTTGTACT-ACCACCGATAGCTGGCACCAG------CCCTTTGATACTGTTATCATT----------------------CTGCTGTAGAAAGTACCCGTGCACTGGAAA-AAGTCC s xenTro2.scaffold_8835 8776 282 + 15709 AAGGCAATGCTGCATATG------TGGCTCCCCAGGACAGGTACAATGGTAGTGTAGGCATAGATAGTATTATTTCAATAGAAATGTGCTAGGTTGCATGTGTTATGGAACGATACATTATGGTTCCATCTTTCCATTATCACAGTATACTAA----------AGATAAATGTATGACCATTCGTGTACCAACTGCCAATTATTGGCAATAGGTTCTCCTCTTTTTTTTTTTTGTTCCTAGGGGTGACTGCCCCCCCCCCCCAGCTTTCAGCAATCCCCATAACCAGGAAATAAGTTC i xenTro2.scaffold_8835 N 0 C 0 s panTro2.chr4_random 1099457 254 - 6711082 AATGCAATAAAGTAAGTGGTATTATCATTCTTCAAAA-AGTTATAATGGTATTGTAGGCATTCATAGTATGATTTACTT---CATTTGCTA--CTGTTTCTATTCTATCACCATA--------TTAACACTTTCCTACACAATTCTACATTCAGCTGGGTTTCAGTTGAGCACAAAGTCATCCTTGTACT-ACCACTGATAGCTGGCACTAG------CTCTTTGATACTGTTATCATT----------------------CTGCTGTAGAAAGTACCCGTGAACTGGAAA-AAGTCC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4708042 254 + 72422247 AAGGCAATGAAGTAAGTGGTATCATCATTCTTCAAAA-AGTTACAATGGTAGTGTAGGCATTCATAGTATGATTTAGTT---CATTTGCTA--CTGTTTCTATTCTATCACCATA--------TTAACACTTTCCTACACAATTCTATATTCAGCTGGGTTTCAGTTGAGCACAAAATCATCCTTGTACT-ACCACCGATAGCTGGCACTAG------CTCTTTGATACTCCTATTATT----------------------CTGCTGTAGAAACTACTCTTGAACTGGAAA-AAGTCC i ponAbe2.chrUn C 0 C 0 a score=-4022.000000 s hg19.chrUn_gl000243 11372 34 + 43341 ACA----CTCGAATAGCTAGT------------CATTCAACAC--TATCAAA- s ponAbe2.chrUn 4708296 34 + 72422247 ACA----ATCGAATAGCTAGT------------CATTCAACAC--tatcaaa- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1099711 34 - 6711082 ACA----ATCGAATAGCTAGT------------CATTCAACAC--TATCAAA- i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_8835 9058 52 + 15709 AGAGCGGAGGGAGTCTCTAGGCCGCGTCGTATTTCTGTAGCGCTTCCTCCAG- i xenTro2.scaffold_8835 C 0 C 0 s danRer6.chr10 34980096 43 - 43467561 ACT----CTCTTATGCCTGGT------CATACATGTCCAGGGCTTCTTCTAAC i danRer6.chr10 N 0 C 0 s calJac1.Contig8072 22224 18 + 98106 ---------------------------------CTTTCAACAC-TTATCAAT- i calJac1.Contig8072 N 0 C 0 a score=16471.000000 s hg19.chrUn_gl000243 11406 27 + 43341 TTTTAG-GTGACTTTTTG---AAAAAATAGT s panTro2.chr4_random 1099745 27 - 6711082 TTTTAG-GTGACTTTTTG---AAAAAATAGT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4708330 27 + 72422247 ttttag-gtgactttttg---aaaaaatagt i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 22242 30 + 98106 TCCTGG-GTGACTTTTTGGAAAAAAAATAGT i calJac1.Contig8072 C 0 C 0 s xenTro2.scaffold_8835 9110 28 + 15709 TTTTAGCGTCACTTTCTGG--AAGAAGCAG- i xenTro2.scaffold_8835 C 0 N 0 s gasAcu1.chrXIII 18013267 27 - 20083130 TTTCCT-GTGATCTTCTGG--AAGAAGGCG- i gasAcu1.chrXIII N 0 C 0 s danRer6.chr10 34980139 27 - 43467561 TTGCCT-GTGATTTTCTGA--AAGAAGCTG- i danRer6.chr10 C 0 C 0 a score=83366.000000 s hg19.chrUn_gl000243 11433 79 + 43341 ATCTCTTGTTGCAAGAAATGTTCCATCTGTGATTTCAAGTCTCTCGCTTGAGTGGATTGGATAGAAGTGGTGAATTTCA s panTro2.chr4_random 1099772 79 - 6711082 ATCTCCTGTTGCAAGAAATGCTCCAACTGTGATTTCAAGTCTCTCGCTTGAGTGGATTGGATGGAAGTGGTGAATTTCA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4708357 75 + 72422247 atctcttcttgcaagaaatgccccatctgtgatttcaagtctctcacttga----attggatggaagtggtgaatctca i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 22272 75 + 98106 ATCTCTTGTTGCAAGAAATGCTACGTCTGTGATTTCAAGTCTCTCAATAGA----ATTGGATTGAAGGGGTGAATTTCA i calJac1.Contig8072 C 0 C 0 s xenTro2.scaffold_700 3753 75 + 528937 ATCTGTTGCTGCAAGAAATGTTGCATTTGTGACTTAAAGTCTCTGACTCGG----ATCTTGTGGAAATGGTGGATCTCT i xenTro2.scaffold_700 N 0 C 0 s gasAcu1.chrXIII 18013294 75 - 20083130 ATCTGCTGCTGCAGGTAGTGCTGCATCTGGGCCTTGAAGTCGCGCACGCGG----ATCTGGTGGAAGTGCTGGATCTCA i gasAcu1.chrXIII C 0 C 0 s danRer6.chr10 34980166 75 - 43467561 ATCTGTTGTTGTAAGAAATACTGCATCTGTGCCTTGAAGTCACGCACACGT----ATGCAATGAAAGTGCTGGATTTCA i danRer6.chr10 C 0 C 0 a score=34045.000000 s hg19.chrUn_gl000243 11512 65 + 43341 GCCAAAGTGGCCAAAGAAATCCTGT-----TCCTGTGATAAT-GATGCCATCAGC-CTCTGTAC-CTCTGTCT s panTro2.chr4_random 1099851 65 - 6711082 GCCAAAGTGGCCAAAGAAATTCTGT-----TCCTGTGATAAT-GATGCCATCAGC-CTCTGTAC-CTCTGTCT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4708432 65 + 72422247 gccaaagtggccaaagaaatcctgt-----tcctgtgataat-gacatcatcagc-ctctgcac-ctctgtct i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 22347 65 + 98106 GCCAATGTGGCCAAAGAAATCCTGT-----TTCTGTGATCCT-TACGTCATCAGC-CTCTGCAC-CTCTGTAT i calJac1.Contig8072 C 0 C 0 s xenTro2.scaffold_700 3828 67 + 528937 GCCAGCGTGGCGTAGGAGATAACGT-----TACAGCGCTCCTGGATTTCACCGGCTTTCTGCAG-CTCCAACT i xenTro2.scaffold_700 C 0 C 0 s oryLat2.chr9 4780635 68 + 33213694 gttaaa--aacaccaaaaacagttttcatctgtgtggCTCTTTAA-GCCTatagt-ctgtgtgt-gtttgcat i oryLat2.chr9 N 0 I 1 s gasAcu1.chrXIII 18013369 67 - 20083130 GCCAGCGTGGCGCAGGAGATGATGT-----TGCAGCGCTCGTCGATGCCCTCCGC-CTGTGAGCGGTCCATCT i gasAcu1.chrXIII C 0 I 1 s danRer6.chr10 34980241 66 - 43467561 GCTAGTGTGGCGCAGGAGATGATGT-----TGCAGCGGTCGTTGATGCCTCCTCC-TGCAGTGCCATCTTTT- i danRer6.chr10 C 0 C 0 a score=27308.000000 s hg19.chrUn_gl000243 11577 53 + 43341 TCCCTTCTGCC-----ACATGTTGCCT--------GTTCTCCGTGACTGTCGTAAGAGCTTCCTTG s danRer6.chr10 34980307 48 - 43467561 ----TCCTCTC------CATGTTTCTG--------GCTCTCCTTGGCTTTAGTGAGGGCTCCTAGA i danRer6.chr10 C 0 I 2784 s oryLat2.chr9 4780704 49 + 33213694 taCCTTTTAGC------TGATTTTAGA--------GGTTTCCAGAACTCag---agtgtttttatg i oryLat2.chr9 I 1 I 10 s gasAcu1.chrXIII 18013437 52 - 20083130 TCCCTCCTCCA------CGTGCTTCTG--------GCTCTCCTTCACCTTGGTCAGCGCTCCTGTG i gasAcu1.chrXIII I 1 I 7332 s fr2.chrUn 286775133 52 - 400509343 TCCCTTCTGCCGTGTGGTGTATTTACGAAagcgctgtttttttttac--------------ctttc i fr2.chrUn N 0 C 0 s xenTro2.scaffold_700 3895 45 + 528937 TCCCTTCTTCA-----ACTTGCTTCTT--------ACTCTCCCGTACTTTGGTCAGAG-------- i xenTro2.scaffold_700 C 0 I 17483 s calJac1.Contig8072 22412 52 + 98106 TCCTTTCTGTC-----ACATGTTATCT--------GCTCTCCATGACTTTGGTAAGAGCTTCC-TG i calJac1.Contig8072 C 0 C 0 s ponAbe2.chrUn 4708497 53 + 72422247 tcccttctGCC-----ACATGTTGGCT--------GCTCTCCGTGACTTTGGTAAGAGCTTCTTTG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1099916 53 - 6711082 TCCCTTCTGCC-----ACATGTTGCCT--------GTTCTCCGTGACTGTGTTAAGAGCTTCCTTG i panTro2.chr4_random C 0 C 0 a score=729806.000000 s hg19.chrUn_gl000243 11630 338 + 43341 TATATGAGGATGATGTCCAGGATGTTGGTCTGGTGTCCCTGAGACAGCACTAACAGGTCCATGGCTGGGTCCAGGTCCTTCCTGGACGGATTGGCAAG-GAGCTCACTGATGTTCTTGAAGGCATCTCTGGTGAAGTGGATGGCC---------------------------TAGTCAAGTTCCAAGGCCTGGCTGAGGCCGAAGAAAAACTGG-CCGCCTTCTGAAGCTCTTTCTAAAAGCCTGTCACTGTCATCTGCTTGCATGTCAACTCATTGGCTGTGAGGTTGAGCTG-AGTGGCCTGT-GTCCATCTTCTTGGGGAAGTATTTGAAGCCATCAATCTTGCTCTCCCACCCCTAAAGGTTGAT s panTro2.chr4_random 1099969 338 - 6711082 TGTATGAGGATGATGTCCAGGATGTTGGTCTGGTGTCCCTGAGAGAGCACTAACAGGTCCATGGCTGGGTCCAGGTCCTTCCTGGACGGATTGGCAAG-GAGCTCACTGATGTTCTTGAAGGCATCTCTGGTGAAGTGGATGGCC---------------------------TAGTCAAGTTCCAAGACCTGGCTGAGGCTGAAGAAAAACTGG-CCGCCTTCTGAAGCTCTTTCTAAAAGCCTGTCACTGTCATCTGCTTGCATGTCAACTCATTGGCTGTGAGGTTGAGCTG-AGTGGCCTGT-GTCCATCTTCTTGGGGAAGTATTTGAAGCCATCAATCTTGCTCTCCCACCCCTAAAGGTTGAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4708550 336 + 72422247 TGTACGAAGATGATGTCCAGGATGTTGGTCTGGTGTCTCTGAGACAGCACTAACAGGTCCATGGCTGGGTCCAGGTCCTGCCTGGACTGATTGGCA---GAGCTCACTGATGTTCTTGAAGGCATCTCTGGTGAAGTGGATGGCC---------------------------TAGTCAAGCTCCAAGGCCTGGCTGAGCCTGAAGAAAAACTGG-CCACCTTCTGATGCTCTTTCTAAAAGCCTGTCACTGTCATCTGCTTGCATGTCAACTCATTGGCTATGAGGTTAAGCTG-AGTGTCCTGT-GTCCATCTTGTTGAGGAAGCATTTGAAGCCATCAGTCTTGCTCTCCCACCCCTAAAGGTTGAT i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 22464 335 + 98106 TGTTTGTGGATGATGTCCAGGATGTTGACCTGGTGTCCCTGAGA-AGCACTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGTGCTGACTGGCAAATTTGCTCACTGATGGTGATGAAGTCATCTTTGGTGAAGCGGATGGGC---------------------------TGATCCAGCTCTAGGGCCTGGCTGAGGCTGAAG---AACTGG-CCACCTTCTGATGCTCTTTTGTAAAGCCT-TCACTCTCATCTGCTTGCATGTCAACTCATTGGCCGTGAAGTTGAGATG-AGTGCCCTGTCATCCATCTTCTTGGTGAAACACTCAAAGTTGTCAATCTTGCTCTCCCACTCCTAAACTTTGAG i calJac1.Contig8072 C 0 I 236 s xenTro2.scaffold_700 21423 359 + 528937 AACATG--GATGATGTCGGGGAAGTTGGCCAGGTGGCCCTGATAGACGGCCAACAAGTCCATAATGGGGTCCAAGTCCTGGCGGGGCTGCTCAGCGAA-CATCTCCCCGATAGCCTCGTAGGCTTCTCCGGTAAAGGCCATTGCCCGGTTGAGGCCAGCCGAAAAGACCATGTGGTCCATCTCAAAGGCCTGCCCCAGCCCCCTGACTGCCTGGCCCACCTTCTGGTACTCCTTCTTGAACCCGGCCGC------CTGTTTGCGGGCAAACTCCCCGGCAGTCTGGCTGAGCTGCAGGACCCCCTCGTCCATCCGTTTGGTGAAGACTTTGAAGCCGTCCAACCTCCCGTCCACATCGTGCGGCTCCA- i xenTro2.scaffold_700 I 17483 C 0 s tetNig2.chr12 5749104 362 + 12622881 TGGACGTGGATGATGTCTGGGAAGTTGGCGAGGTGTCCCTGGTACAGGCCCAACAGGTCCATGATGGGGTCCAGGTCCTTCCTGGGCTGCTCTGCAAA-ATAATCCCCGATGGCGTCGTAGGCCTCGGCGGTGAAGGAGAGAGCCTGGTTGAGCCTGGCAGAGTACGGCTGCTGGTCCATCTCGAAGGCCTGGCCGAGGACCTTGAAGGACAGCCCCATTTTCTGGTACTCCTTCTTGAAGCCGCTCAT------CTGCTTGCGGGCGAACTCGCTGGCGGTGGCGTTGAGCTGCAGGGTGCTGTCGTCCATCCTTTTGGTGAAGGCCTTGAAGCCGTCCACTTTGCTCTCGACCTCCTGGAAGTcgag i tetNig2.chr12 N 0 C 0 s fr2.chrUn 286775185 362 - 400509343 tgGACATGTATGATGTCTGGGAAGTTAGCTAGATGTCCTTGGTAGAGACCTAACAAATCCATGATGGGGTCCAGGTCCTTCCTCGGCTGCTCTGCAAA-ATAATCCCCGATGGCGTCGTAGGTGTCGGCGGTGAAGGAGATAGCCTGGTTCAGCCCAGCGGAGTACGGCTGCTGGTCCATTTCAAAGGCCTGGCTGAGGACCTTGAAGGACAGCCCCATTTTCTGGTATTCCTTCTTAAAGCCGCTCAT------CTGCTTGCGGGCAAACTCGCTGGCGGTGGCGCTGAGCTGCAAGGCGCTGTCGTCCATCCTCTTGGTGAAGGTCTTGAAGCCGTCCACTTTGCTCTCCACCTCCTGGAAGTCGAG i fr2.chrUn C 0 C 0 s gasAcu1.chrXIII 18020821 362 - 20083130 TGCACGTGGATGATGTCCGGGTAGTTGGCCAGGTGTCCTTGATAGAGCGCTAACAGGTCCATGATGGGGTCCAGGTCCTTGCCGGGCTGCTCGGCGAA-GTACTCCCCGACGGCCTCGTACGCGTCTCCGGTGAAGGAGATGGCCTGGTTGAGTCCGGCGGAGTACGCCTGCTGGTCCATCTCGAAGGCTTGGCCGAGCACCTTGAAGGAGAGCCCCACTTTCTGGTACTCCTTCCTGAAGCCGGCGAT------CTGCTTGCGGGCGAACTCGTTGGCGGTGGCGCTGAGCTGCAGCGCCGAGTCGTCCATCCGCTTGGTGAAGCTCTTGAACCCGTCGATCTTGCTCTCCACCTCCTGGAAGTCGAG i gasAcu1.chrXIII I 7332 C 0 s oryLat2.chr9 4780763 362 + 33213694 TGAACATGGATGATGTCTGGGTAGTTTGCCATGTGTCCCTGGTAAAGAGCCAACAAATCCATGATTGGGTCGAGATCCTTGCTGGGCTGCTCTGAAAA-ATACTCTCCGATTGCTTCATATGTGTCTCCGGTGAAGGAGATGGCGTGGTTGAGTCCTGAGGAATACGCCTGCTGGTCCATCTCGAAGGCTTGGCTCAGGAACTTGAAGGACATCCCCACTTTCTGATACTCCTTCCTGAAGCCGCTGAT------CTGCTTGCGAGCGAACTCGCTGACCGTGGCGTGTAGCTGCAGGGCGCTGTCGTCCATTCTTTTGGAGAAGGTCTTGAAGCCGTCCACTTTGCTCTCGACCTCCTGGAAGTCCAG i oryLat2.chr9 I 10 C 0 s danRer6.chr10 34983139 355 - 43467561 -------GGATAATGTCTGGAAAGTTTGCGAGGTGTCCCTGGTAAATCGCTAAAAGATCAGAAATTGGCTCCAAATCCTGACGAGGCTGCTCTGCAAA-GTAATCCCCAATGGTCTCGTAGACTTCTCCAGTGTTTGCCATGGCCTTGTTTAGCGGAGATGAGAATACTTGCTGGTCGACCTCAAAGGCCTGACTTAGAAGTCTGAAAGCCTGTCCAACTCTCTGATATTCCTTTTTAAAACCAGTGAT------CTGCTTCCTGGCAAACTCGTTAATAGTGACGTTGACCTGTATGATGTTCTCATCCATTTTTTTGGTGAACGTTTTGAAGCCCTCCACTTTGTTTTCTACCTCTTGTAAGTCAAG i danRer6.chr10 I 2784 C 0 s petMar1.Contig57579 4750 362 + 5424 TGAATGTGAATGATGTCTGGGAAATTGGCGAGCAGTCCTTGGTAGAGGCACGTCACGTCCATCAGGGGCTGGAGATCCTGCTGTGGCTGTTGTGCAAA-TAGCTCCCCGATTGCCACGTAGGTGTTGCCTGTGTGGGTGATTGCTTTGGTGAGGTTGTCCGAATAGTGCTGATCATCCTGCTCAAACGACTGTCCTAGATTCTCGAACACCTGGCCCATCTTCTGAAAGTCGCGCTTGTAGTCAATGCA------ATGTTTGCGTGCCATCTCCCCGGCCGTGCCATTGAGCAGGACCACACTTTCATCCATTCTTTTGGAGAAGCTTCTGAAAGAGTCGGTCCGTGCCTCGACGTCCTGCAGGTCCAG i petMar1.Contig57579 N 0 C 0 a score=382925.000000 s hg19.chrUn_gl000243 11968 214 + 43341 GGTCACCA-------CCTGGGGGTGTGCTGAGGGTCAGAAAGAAGCCAGCACTCACCATCTCATCCTTCTCAGCCTTCCTCTTGCACTCTCTCCAGGCTGTCTCTTCAGTGCTGGTGGGATATATCAGAAAGTGATGGAAGATGTGGCACTGTGCCCACACCCAGAAGCTGGCCATGTGGTTGGCTCATCCACCAGAATGGATGCTCTGGTTGCTCTTTGA s ponAbe2.chrUn 4708886 213 + 72422247 GGTCACCA--------CTGGGGGTGGGCTGAGGGTCAGAAAGAAGCCAGCACTCACCATCTCATCCTTCTCAGCCTTCCTCTTGCACTCTCTTGAGGCTGTCTCTTCAGTGCTGGTGGGATACATCAGAAAGTGATGGAAGATGTGGCAATGTGCCCACACACAGAAGCTGGCCATGTGGTTGGCTCATCCACCAGATTGGATGCTCTGGTTGCTCTTTGA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1100307 205 - 6711082 GGTCACCA-------CCTGGGGGTGTGCTGAGGGTCAGAAAGAAGCCAGCACTCACCATCTCATCCTTCTCAGCCTTCCTCTTGCACTCTCTCCAGGCTGTCTCTTCAGTGGTGGTGGGATATATCAGA---------AAGATGTGGCACTGTGCCCATACCCAGAAGCTGGCCATGTGGTTGGCTCATCCACCAGAATGGATGCTCTGGTTGCTCTTTGA i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_700 21782 178 + 528937 --GCACCGG--GGAGCCGGGGGGGAGGCTGAGGGTGAGGAAGAAGTTGGCCCCCACCATCTCGTCCCTCTCGCACTTTCTCTTGCCCTGTTTCCAGGCCTTCTCGTCGGTGCAGCTG---------AGGAAGTGCTGGAAGGCGTCGCACCGCGCCAGGACCGGGTGGCTGCACATGTGCT----CCATCCACCA-------------------------- i xenTro2.scaffold_700 C 0 I 2 s tetNig2.chr12 5749466 201 + 12622881 -----------cggcgccggcggcgtGCTGATGGTGAGGAAGAAGTTGGCTCCCACCATTTCGTCCTTCTCGGCCTTCCTCTTCCCCTGCTTCCAGGCCTTCTCGtccgtgctgctg---caggtgaggaagtGCTGGAAAACATCACACCTGGCCAGGACGGGGTGGCTGGTCATGTGGT----TCATCCACCA--AATGAGGCCTTTCCTCCTCTTGGA i tetNig2.chr12 C 0 I 1 s fr2.chrUn 286775547 201 - 400509343 -----------GGGAGCCGGCGGGGTGCTGATGGTGAGGAAGAAGTTGGCCCCGACCATCTCGTCCTTCTCCGCCTTCCTCTTCCCCTGCTTCCAGGCCTTTTCgtccgtgctgctg---caggtgaggaagTGCTGGAAAACATCGCACCTGGCCAGGACGGGGTGGCTGGTCATGTGGT----TCATCCACCA--TATGAGGCCTTTCCTCCGCTTGGA i fr2.chrUn C 0 I 20 s gasAcu1.chrXIII 18021183 201 - 20083130 -----------CGGCGCCGCCGGGGTGCTGATGGTGAGGAAGAAGTTGGCTCCGACCATCTCGTCCTTCTCCGCCTTCCTCTTGCCCTGCTTCCAGGCCTTCTCGTCGGCGCTGTTG---CAGCGGAGGAAGTGCTGGAAGACGTCGCACCGGGCCAGCACCGGGTGGCTCGTCATGTGGT----TCATCCACCA--CGTGAGGCCCTTCTTGCGCTTGGA i gasAcu1.chrXIII C 0 I 1 s oryLat2.chr9 4781125 201 + 33213694 -----------AGGAACCGCTGGGGGGCTGATGGTGAGAAAGAAGTTGGCCCCCACCATGTCGTCcttctctgccttcctcttgccTTGCTTCCAGGCCTTCTCGTCGGCGCTGTTG---CAGGTAAGGAAGTGCTGAAAAACGTCACACCGGGCCAGGACGGGGTGGCTGGTCATGTGGT----TCATCCACCA--TATGAGGCCCTTTCTCCTTTTGGA i oryLat2.chr9 C 0 I 1 s danRer6.chr10 34983494 201 - 43467561 -----------CGGTAAAGCTGGAGGACAGATAGTGAGGAAGAAGTTAGCGCCGACTAAGTCATCCTTCTCGGCCTTTCGCTTGCCTTGCTTCCAGGCTTTTTCATCAGTGCTACTG---CAGGTGAGGAAATGCTGGAAAACATCACACTTGGATAAAACAGGATGACTCGTCATGTGAT----TCATCCACCA--TATTAAACCTTTCCGTCTCTTAGA i danRer6.chr10 C 0 I 1 s petMar1.Contig57579 5112 198 + 5424 --------GTGTGACGTTGGCGGTGCACTAATGGTCAGGTAGAACTTGGCTCCCACGGCATCATCTTTCTCAGCCCTTCGCTTGCCCTGCTTCCACGCTTTCTCGTCGGTG---------CACGTGAGAAAGTGCTGGAAGGCGTCGCACTGCGCGAGCACCGGATGGCCCGTCATATGAT----TCATCCAGAG--GATGAGGCCCCGCCTGCGCTTCTG i petMar1.Contig57579 C 0 N 0 e calJac1.Contig8072 22799 236 + 98106 I a score=9839.000000 s hg19.chrUn_gl000243 12182 38 + 43341 ACC----AGCTTGGCCTTGCCTGGCATGTACAGGCCCCAGGT s ponAbe2.chrUn 4709099 38 + 72422247 GCC----AGCTTGGCCTTGCGTGGCATGCACAGGCCCCAGGT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1100512 38 - 6711082 GCC----AGCTTGGCCTTGCCTGGCATGCACAGGCCCCAGGT i panTro2.chr4_random C 0 C 0 s fr2.chrUn 286775768 40 - 400509343 GCCCCGTGGCCTG--CTTCTCCGGCAGGTGCGGCACTGAGAT i fr2.chrUn I 20 N 0 s oryLat2.chr6 5101292 32 + 26576615 GCCCCGTTGCTTG--CTTCTCAGGCAAATGAGGG-------- i oryLat2.chr6 n 1 C 0 e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 22799 236 + 98106 I a score=13385.000000 s hg19.chrUn_gl000243 12220 101 + 43341 ACAGACACGTTGCTCTGAGTGAACTTGTCCTGCCTTGGG-------------CCAAATTCT--GTCAGGCCAGGGTCACAAAAGGCCGAGTTCCACGGGTGGTAATCCTGGCTGCT s ponAbe2.chrUn 4709137 77 + 72422247 ACCGACATGCTGCTCCAAGTGAGCTTGTCCTGACTTTGG-------------CCAAATTCTAAGTCTGGCCAAGGCCAC-AAAGGCTGAGT------------------------- i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1100550 101 - 6711082 ACAGACACGTTGCTCCGAGTGAACTTGTCCTGCCTTGGG-------------CCAAATTCT--GTCAGGCCAGGGCCACAAAAGGCCGAGTCCCAGGGGTGGTAATCCTGGCTGCT i panTro2.chr4_random C 0 C 0 s oryLat2.chr6 5101324 108 + 26576615 ACTGA------GATCACAGTGAACTTGTTTAGCAGTCGGTTGTACAACCAGTCGAAGTGCT--TGTAGCGCCGGTAGACGGGACGCCCGGTGTGACTTGGTGTGACCCTGTATGAT i oryLat2.chr6 C 0 n 0 e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 22799 236 + 98106 I a score=8658.000000 s hg19.chrUn_gl000243 12321 58 + 43341 TTCTGCACTGCAACATAAAGACCTACTGAAGATGGCCTGTGGTCTGCCTCTTTGCAAC s ponAbe2.chrUn 4709214 37 + 72422247 ---------------------CCTACTCATGACGGCCTGTGGTCTGCCTCTTGGCAAC i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1100651 58 - 6711082 TTCTGCACTTCAACATAAAGGCCTCCTGAAGATGGCCTTTGGTCTGCCTCTTTGCAAC i panTro2.chr4_random C 0 C 0 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 22799 236 + 98106 I a score=14426.000000 s hg19.chrUn_gl000243 12379 32 + 43341 CAAGAAGCCCGCAGTGCCATATGAGCCCTGAG s calJac1.Contig8072 23035 32 + 98106 CAAGAAGCCCGCAGTGCTGTAAGAGCCCTGAT i calJac1.Contig8072 I 236 C 0 s ponAbe2.chrUn 4709251 32 + 72422247 CAAGAAGCCTGCAGTGCCATACGAGCACCAAG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1100709 32 - 6711082 CAAGAAGCCCGCAGTGCCATATGAGCCCTGAG i panTro2.chr4_random C 0 C 0 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I a score=11309.000000 s hg19.chrUn_gl000243 12411 21 + 43341 GCATGGACTGGAGCCCCCAAG s panTro2.chr4_random 1100741 21 - 6711082 GCATGGACTGGAGCCCCCAAG i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4709283 21 + 72422247 GCATGGACTGGAGCCCCAAAG i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 23067 21 + 98106 GCATGGACTGGGGCCCCAAAG i calJac1.Contig8072 C 0 C 0 s tarSyr1.scaffold_228995 3305 20 + 3711 GTACAGACTGTAGGATCCAG- i tarSyr1.scaffold_228995 N 0 N 0 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I a score=16330.000000 s hg19.chrUn_gl000243 12432 35 + 43341 GCAG--CGCACACGCTGCTCCTGAGCCTGCTGCTCAT s panTro2.chr4_random 1100762 35 - 6711082 GCAG--TGCACACCCTGCTCCTGAGCGTGCTGCTCAT i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4709304 35 + 72422247 GCAG--CACACACCCTGCTCCTGAGCCTGCTGCTCAT i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 23088 37 + 98106 GCAGCACACACACCCTGCTCCCGAGCCTGCTGCTCAT i calJac1.Contig8072 C 0 I 722 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I a score=11844.000000 s hg19.chrUn_gl000243 12467 62 + 43341 TTTCTCTGTGTGGCTCCATTTGTGTCACAGTTGTTGCACTGA--CTAGTGCATACTGA-GGAAGG s ponAbe2.chrUn 4709339 64 + 72422247 TTCCTCTATGTGGCTCCGTTTGTAGCACAGTTGTTGCACTGAGGCTTCTGCAAGATGG-GCAAGG i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1100797 63 - 6711082 TTTCTCTGTGTGGCTCCATTTGTGTCACAGTTGTTGCACTGA--CTAGTGCATGCTGAGGGAAGG i panTro2.chr4_random C 0 I 151 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 23125 722 + 98106 I a score=12747.000000 s hg19.chrUn_gl000243 12529 49 + 43341 CCAGGCTGGCTCAAAAAGCAACCGGCCACCTCTGCAAGGGTGTGCCTGG s panTro2.chr4_random 1101011 49 - 6711082 CCAAGCTGGCTCAAAAAGCAACCGGCCACCTCTGCAAGGGTGTGCCTGG i panTro2.chr4_random I 151 C 0 s ponAbe2.chrUn 4709403 49 + 72422247 CCAAGTTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCAGG i ponAbe2.chrUn C 0 C 0 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 23125 722 + 98106 I a score=11446.000000 s hg19.chrUn_gl000243 12578 48 + 43341 AGCTGGTGGACCAGCCACC---AACCTGACTTGCTGCCGGTCGGGTTACAT s ponAbe2.chrUn 4709452 48 + 72422247 TGCTGGTGGACCGGTCACC---AACCTCACTCACTGCCAGTCTGGGTACAT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1101060 48 - 6711082 AGCTGGTGGACCAGCCACC---AACCTGACTTGCTGCCGGTCGGGGTACAC i panTro2.chr4_random C 0 C 0 s tarSyr1.scaffold_220915 570 45 - 2445 ACCTAGGGAGCTGGCCTCCTGGGACCTCACTTGC--CCAATT----TTCAT i tarSyr1.scaffold_220915 N 0 N 0 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 23125 722 + 98106 I a score=71502.000000 s hg19.chrUn_gl000243 12626 324 + 43341 CAGTTCTTCTACCCTACAGTTAGGGCCACAGTGCTATCTGCTTTTCCTTAGGCCTCTGCTCCATCAGCCATCAGGAGGCAGCCCCTCAGGCTGTAGGAATCTGGCCATCCCTGCTTCCTTGAGTGGGTGAGGTTGGTGGTTGCTCCACCTGCTCCAGGCACACCCTTGCAGAGGTGGCTGCTTGCTCTTTGATCCAGCTTGGCCTTGCCTGGCATGCACAGGCCCCAGCTACCTATATGCCGTTCCAAGTCAGCTTGTAGTGTGTTGGGCCAAATTCTACCTCTGGCCAGGGCCACAGAAGGCCGAGTCCCCTGGGTGCTAATC s panTro2.chr4_random 1101108 324 - 6711082 CAGTTCTTCTACCCTACAGGTAGGGCCACAGTGCTATCTGCTTTTCCTCAGGCCTCTGCTCCATCAGCCATCAGGAGGCAGCCCCTCAGGCTGTAGGAATCTGGCCATCCCTGCTTCCTTGAGTGGGTGAGGTTGGTGGTTGCTCCACCTGCTCCAGGCACACCCTTGCAGAGGTGGCTGCTTGCTCTTTGATCCAGCTTGGCCTTGCCTGGCATGCACAGGCCCCAGCTACCTATATGCTGTTCCAAGTCGGCTTGTAGTGTGTTGGGCCAAATTCTACCTCTGGCCAGGGCCACAGAAGGCCGAGTCCCCTGGGTGCTAATC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4709500 306 + 72422247 CAGTTCTACTATCCTAGAGGTAAGGCCCTAGTGCCA------------------TCTGCTCCATCGGCCATGAGGAGGCAGCAACTCAGGCTGTTGGAACTTGGTCATCCCTGCTTCCTTGACTGGGTGAGGTTGCTGGCTGCTCTACCTGCTCCAGGCACACCCTTGCAGAAGTGGCTGGTTGCTCTTTGAGCCAGTTTGGCCTTGCCTGTCATGCACAGGCCCCAGGTACTGACACACTGCTCCACGTGAGCTTGTCCTGCCTTTGGCCAAATTCTAAGTCTGGCCAGGGCCATAGAAGGCCAAGTCCTCTAGGTGGTAATC i ponAbe2.chrUn C 0 C 0 e oryLat2.chr6 5101432 0 + 26576615 I e gasAcu1.chrXIII 18021384 1 - 20083130 I e danRer6.chr10 34983695 1 - 43467561 I e xenTro2.scaffold_700 21960 2 + 528937 I e tetNig2.chr12 5749667 1 + 12622881 I e calJac1.Contig8072 23125 722 + 98106 I a score=61459.000000 s hg19.chrUn_gl000243 12950 95 + 43341 CTGGCTGCTTTCTGCACTTGAACATAAAGTCCTCCTCAAGACCGTCTGTGGTCTGCCTCTTGG---CGACCAAGAAGCCTACAGTGCCATACGAGCCC s xenTro2.scaffold_700 21962 66 + 528937 CCAGCCCCTTCTTCCGCTTGGAGATGAAATCCTCCTCGAAGCGCCCGGTGGCCTGTTTCTCCG---GGA----------------------------- i xenTro2.scaffold_700 I 2 N 0 s panTro2.chr4_random 1101432 95 - 6711082 CTGGCTGCTTTCTGCACTTGAACATAAAGTCTTCCTCAAGACCGTCTGTGGCCTGCTTCTTGG---CGACCAAGAAGCCTACAGTGCCATACGAGCCC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4709806 95 + 72422247 CTGGTTGCTTTCTGCACTTGAACATAAAGTCCTCCTCAAGATGACCTGTGGTCTGCATCTTGG---CAACCAAGAAGCCTGTAGTGCCACACAAGCCC i ponAbe2.chrUn C 0 I 638 s oryLat2.chr9 4781327 43 + 33213694 -----------------------ATGAAGTCCTCCTCAAAGCGCCCCGTGGCCTGCTTCTCTGGGA-------------------------------- i oryLat2.chr9 I 1 N 0 s gasAcu1.chrXIII 18021385 40 - 20083130 -----------------------ATGAAGTCCTCCTCGAAGCGCCCGGTGGCCTGCTTCTCGG----------------------------------- i gasAcu1.chrXIII I 1 N 0 s tetNig2.chr12 5749668 37 + 12622881 -----------------------ATGAAGTCCTCCTCGAAGCGCCCCGTGGCCTGCTTCT-------------------------------------- i tetNig2.chr12 I 1 N 0 s danRer6.chr10 34983696 40 - 43467561 -----------------------ATGAAATCCTCCTCAAATCGACCTGTGGCTTGTTTCTCAG----------------------------------- i danRer6.chr10 I 1 N 0 s fr2.chrUn 314986524 56 + 400509343 -------CTTCCTCCGCTTGGCGATGAAGTCTTCCTCAAAGCGGCCGGTGGCCTGTTTTTCGG----------------------------------- i fr2.chrUn N 0 N 0 e calJac1.Contig8072 23125 722 + 98106 I a score=41002.000000 s hg19.chrUn_gl000243 13045 170 + 43341 TGAGGCATGGACTGGAGCCACAAAGGCAGTGCACGCCCCATTCCTGAGCCTGCTGATCATTTCCTCTTTATGGCTCCATTTGTTGTACACTTGTTGCAGTGAGGCTTGTGCATGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAAGCAGCCACCTCTGCAAGGT-GTGCCA s panTro2.chr4_random 1101527 170 - 6711082 TGAGGCATGGACTGGAGCCACAAAGGCAGTGCACGCCCCATTCCTGAGCCTGCTGATCATTTCCTCTTTATGGCTCCATTTGTTGTACACTTGTTGCAGTGAGGCTTGTGCATGCCACGCAAGGCCAAGCTGGATCAAAGAGCAAGCAGCCACCTCTGCAAGGG-GTGCCA i panTro2.chr4_random C 0 I 820 s ponAbe2.chrUn 4710539 171 + 72422247 TGAGGCATGGACTGGAGCTCCAAACACATTCCACACCCTGCTCCTGAGCCTGCTGATCGTTTCCTCTATATGGCTCCATTTGTAGCACAGTTGTTGCAGTGAAGCTTGTGCATGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCA i ponAbe2.chrUn I 638 C 0 e calJac1.Contig8072 23125 722 + 98106 I a score=21938.000000 s hg19.chrUn_gl000243 13215 267 + 43341 GGAGCAGGTGGACCAGCCGTCAACCTCACTCACTGTCAGACGTGGTACATCAGTTCTTCTACCCTAAAGGTGGGGCCGAGAAGTAGACCACAGGCCATCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGGCAGGATTACCACCCAGGGG-ACTCAGCCTTCTGTGGCCCACAGTgccatatgaaccccgaggcatggaccggtgccatctgctttatacaaaaattaacttaagatagattaaagagttaaacatGCCACCTG s ponAbe2.chrUn 4710710 268 + 72422247 GGAGCAGGTGGACCAACCACCAACCTCACTCACTGCCGGACATGGTACATCAGCTCTTCTACCCTAAAGGTAGGGCTGAGAGGCAGACCACAGGCCATCATGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTACCACCCAGGGGGACTCAGCCTTCTGTGGCCCACAGTGCCATACGAGCCATGAGGCAtggactggtgccatatgctttatacaaaaattaatttaagatggattaaagagttaaaCATGCCATCTG i ponAbe2.chrUn C 0 C 0 e calJac1.Contig8072 23125 722 + 98106 I e panTro2.chr4_random 1101697 820 - 6711082 I a score=26400.000000 s hg19.chrUn_gl000243 13482 110 + 43341 CTTTTCCTCAGGCCTCTGCTCCATCAGCCATCAGGAGGCAGCCACTCAGGCTGTGGAAACCTGGCCATCCTGGCTTCCTTCAGTGGGTGAGGTTGGTGGCTGGTCCACCT s ponAbe2.chrUn 4710978 110 + 72422247 CTTTTCCTCAGGCCTCTGCTCCATCAGCCATCAGGAGGCAGCCACTCAGGCTGTGGAAACCTGGCCATCTCTGCTTCCTTCAGTGGGTGAGGTTGGTGGGTGGTCCACCT i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 23847 110 + 98106 CTTTTCCCCGGGCCTCCGCTCCATCAGCCATCAGCTGGTGGCCACTCAAGCTGTGGGAACCTAGCCACCCCTGCTTCCTTGAGTGGGTGAGGTTGGTGGCTGGTGCACCT i calJac1.Contig8072 I 722 C 0 e panTro2.chr4_random 1101697 820 - 6711082 I a score=63785.000000 s hg19.chrUn_gl000243 13592 128 + 43341 GCTCCAGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGACTGGCATGCACAGGCCCCAGGTACTGACACGTTGCTCTGAGTGAGCTTGTCCTGCCTTGGGCCAAACTCT s panTro2.chr4_random 1102517 128 - 6711082 GCTCCAGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGGCCCCAGGTACTGACACGTTGCTCTGAGTGAGCTTGTCCTGCCTTGGGCCAAACTCT i panTro2.chr4_random I 820 C 0 s ponAbe2.chrUn 4711088 128 + 72422247 GCTCCAGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTCACATGCACAGGCCACACCTACTGACACACTGCTCTGAGTGAGCTTGTCCTGCATTGGGCTAAATTCT i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 23957 128 + 98106 GCTCCAGGCACACCCTTACAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGGCCCTAGGTAATGACACAGTACTCTGAGTGAGACTGTCCTGTCTTGGGCCGAATTCT i calJac1.Contig8072 C 0 I 2 a score=23540.000000 s hg19.chrUn_gl000243 13720 31 + 43341 GTCAGGCCAGGGTCACAAAAGGCCGAGTCCC s panTro2.chr4_random 1102645 31 - 6711082 GTCAGGCCAGGGTCACAAAAGGCCGAGTCCC i panTro2.chr4_random C 0 C 0 s gorGor1.Supercontig_0041498 6106 31 - 8709 GTCTGGCCAGGGTCACAAAAGGCTGAGTCCC i gorGor1.Supercontig_0041498 N 0 C 0 s ponAbe2.chrUn 4711216 31 + 72422247 GTCAGGCTAGGGCCACAGAAGTCCCAGTGCC i ponAbe2.chrUn C 0 C 0 s calJac1.Contig8072 24087 31 + 98106 GTCTGGCCAGGGTCACAGAAGGCTGAGTCCC i calJac1.Contig8072 I 2 N 0 a score=19746.000000 s hg19.chrUn_gl000243 13751 51 + 43341 ACGGGTGGTAATCCTGGCTGCTTTCTGCACTTCAAAATAAAGGCCTCCTGA s panTro2.chr4_random 1102676 51 - 6711082 ACAGGTGGTAATCCTGGCTGCTTTCTGCACTTCAACATAAAGGCCTCCTGA i panTro2.chr4_random C 0 C 0 s gorGor1.Supercontig_0041498 6137 51 - 8709 CTAGNTTGTAATCCTGGCTGCTTTCTGCACTTGAACATAAAGTCCTCCACA i gorGor1.Supercontig_0041498 C 0 N 0 s ponAbe2.chrUn 4711247 51 + 72422247 CTGGGTGGTAATCCTGGCTGCTTTCTGAACTTGAACATAAAGCATTCCTCC i ponAbe2.chrUn C 0 C 0 a score=37322.000000 s hg19.chrUn_gl000243 13802 159 + 43341 AGATGGCCTGTGGTCTGCCTCTTTGCACCCAAGAAGCCCGCAGTGTCATATGAGCCCTGAGGCATGGACTGGAGCCCCCAAGGCAGCGCACACCCTGCTCCTGAGCCTGCTGCTCATTTTCTCTGTATGGCTCCATTTGTGTCACAGTTGTTGCACTGA s panTro2.chr4_random 1102727 159 - 6711082 AGATGGCCTATGGTCTGCCTCTTTGCATCCAAGAAGCCCGCAGTGCCATATGAGCCCTGAGGCATGGACTGGAGCCCCCAAGGCAGCGCACACCCTGCTCCTGAGCCTGCTGCTCATTTTCTCTGTATGGCTCCATTTGTGTCACAGTTATTGCACTGA i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 4711298 159 + 72422247 AGATGGCCTGTGGTCTGCCTCTTGGCAACCAAGAAGCCTGCAGTGCCATGCGACCCCTGAGGAATGGACTGGCTCCCCAAAGGCAGTGCATACCCTGCTCTTGATCCTGCTGCTCCTTTCATCTGCGTGGCTCCATTTGTAGCACTGTTGTTGCACTGA i ponAbe2.chrUn C 0 I 16576 a score=578671.000000 s hg19.chrUn_gl000243 13961 2332 + 43341 CTTGTGCATGCCGGGCAAAGCCAAGCTGGCTCAAAAAGGAACCAGCCACGTTTGCAAGGGTGTGGCTGGAGTGATTGGACTAGCCATCAACGTCACCCACTCAAGGAAGCAAGGAATGCGTGTTTGTACCATGCATTTCATTACAGGTACATTTCCCCTGAGGTTGTTGgcctagg-tttcttctagattttttattgttttaggtcttgcatttaactctttcatccatatt-acttaatttttgtttaaggtgtatgggtgtggcccagtttcagttttctgcataaggctagccagttttcccaagatcatttattaaatagggtatcctttacccattgcttgtttttgtcaggtttgtcaaagatcagatgcttttagatgtgtggtgtcatttctgaggcctctgttctgttccattggtctatagatctgatttggtaccagccccatgctgttttggttactgtagtcttgtagaataatttgaagtcaggtactgtgatgcctctagctttgttgtttttgcttaggattgtcttggctatgtgggctcttttatggttccatatgaaatttaaagtagtttttctaattctatgaagaaagtcaatggtagcttaatgaggatagcaataaatctataaattactgtgggtggtatagcACTCAGGCACATAAATGTCCTTGTGTtaggcaataccattcaggacagagccataggcagagacttcatcaccagaacacaaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaactaaactaaacagtatctgcagtgcaaaagaaactattatcagagtgaacaggcaacccacagaatgggagaaaattgttgcaatctatccatctgacaaagggctaatatgcagaatctacaaagaacaaacttacaagaaaaaaaaaaacaaacaaccccatcaaaaagtggacaaaggatatgaacagacacttaccaaagaagacatttatacagccaacgaacatgtgaagcaaagcacatcatcactggtcattagagaaatggaaatcaaaaccacaatgagatacaatctcaca-gcacttagaatggctatcgttaaaaaatcagggaacaacagatgctggacaggatgtggagaaataggaacgcttttacacagttggtgggaatataaattagttcaaccattgtggaagacagtgtgacaattcctcaaggatctacaactagaaatatcatttgacccagcaatcccattactgggtaaatacccccaaaattataaatcattctaatataaagacacatgcacctgtctgtttatggcggcacttttcacaaaaccaaagacttggaaccaacccaaatgcccaccaatgatagactggataaagaaaatgtggcatatatacaccatggaatactatgtagccat-aaaaaggatgaatccacgtccttcgctgggacatgaatgaagctggaaagcatcattctcagcaaactaacacaagaacagaaaaccaaacaccacatgttctcactcataacttggagttgaacaatgggaacacatggacacagcaaggggaacatcacacaccagggcctgtcagcgtggggggctaggagagggatggcattaggagaaataactaatgtagatcatgggttgatggatgcagcaagccgccatggcatgtgtatacctatgtaacaaacctgcatgttctgcacatgtaccccagaacttaaagtataatt-taaaaaaaaaGAAATTTGCTTTAAATTAAGCTTTTAATCATAGAACCTGTAAAGAAACCCCTTTTGAATCTTTTACTACCACATCATAGCTGGGACAAACTGCTGACGTTTTAAAAGTAACACAAATATCAAACAGAAAGAACTAGACTTAGGAACCAAACTCAGGTTTCTGTAGTGAACAGGGCAGAATCTTCACATTGGGTCACCACCACTACTC--------CTTCAGTTTggccttggctagcaaaaggatgacctttttatgtagatgagaccAGTTACGTAAAAAAAAAGGTTTAAAAAATAATTTCTGCTAACTGGAATgcttttttttgttgtttatttgtttgtttt---------tttgcagccataggagttttagccaattcagaggacttgctccccataatttggaacattcctttggatttgaccaagtcaggaAGAGatgggagaaaagtgaaacaacaacaataaaaccccaagcataaacaaacaaaaagagttaagcaaaac-aacaactgcacaattcatatgattactgagtgttctaatggtaaggaga s panTro2.chr4_random 1102886 2328 - 6711082 CTTGTGCATGCCGGGCAAAGCCAAGTTGGCTCAAAAAGGAACCAGCCACGTTTGCAAGGGTGTGCCTGGAGTGATTGGACTAGCCATCAACGTCACCCACTCAAGGAAGCAGGCAATGCGTGTTTGTACCATGCATTTCACTACAGGTACATTTCCCCTGAGGTTGGTGgcctagg-tttcttctagattttttattgttttaggtcttgcatttaactctttcatccatatt-acttaatttttgtttaaggtgtatgggtgtggcccagtttcagttttcttcataaggctagccagttttcccaagatcatttattaaatagggtatcctttacccattgcttgtttttgtcaggtttgtcaaagatcagatggttttagatgtgtggtgtcatttctgaggcctctgttctgttccattggtctatagatctgatttggtaccagccccatgctgttttggttactgtagccttgtagaataatttgaagtcaggtactgtgatgcctctagctttgtcgtttttgcttaggattgtcttggctatgtgggctcttttttggttccatatgaaatttaaagtagtttttctaattctatgaagaaagtcaatggtagcttaatgagggtagcaatgaatctataaattactttgggtggtatagcACTCAGGCACAGAAATGTCCTTGTATtaggccataccattcaggacagagccatgggcagagacttcatcaccagaacacaaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaactaaagtaaacagtatctgcagtgcaaaagaaactattatcagagtgaacaggcaacccacagaatgggataaaattgttgcaatctatccatctgacaaagggctaatatgcagaatctacaaagaacaaacttacaag-aaaaaaaaaacaaacaaccccatcaaaaagtggacaaaggatatgaacagacacttaccaaagaagacatttatacagccaacgaacatgtgaagcaaagcacatcatcagtggtcactagagaaatggaaatcaaaaccacaatgagatacaatctcaca-gcacttagaatggctatcgttaaaaaatcagggaacaacagatgctggacaggatgtggagaaatagaaacgcttttacacagttggtgggaatataaattagttcaaccattgtggaagacagtgtgacaattcctcaaggatctacaactagaaatatcatttgacccagcaatcccattactgggtatatacccccaaaattataaatcattctaatataaagacacatgcacctgtctgtttatggcggcacttttcacaaaaccaaagacttggaaccaacccaaatgcccaccaatgatagactggataaagaaaatgtggcatatatacaccatggaatactatgtagccataaaaaaggatgaatccacgtcctttgctcggacatgaatgaagctggaaagcatcattctcagcaaactaacacaagaacagaaaaccaaacaccacatgttctcactcataacttggagttgaacaatgggaacacatggacacaggaaggggaacatcacacaccagggcctgtcagcgtggggggctaggagagggatggcattaggagaaataactaatgtagatcatgggttgatggatgcagcaagccaccatggcatgtgtatacctatgtaacaaacctgcatgttctgcacatgtaccccagaagttaaagtataattaaaaaaaaaaAGAAATTTGcttttaattaagcttttaatcatagaacttgtaaagaaaacccttttgaatcttttactaccacatcatagctgggacaaactgctgacg-tttaaaagtaacacaaatatcaaacagaaagaactagacttaggaaccaaactcaggtttctgtagtgaaCAGGGCAGAATCTTCACATTGGGTCACCACCACTACTC--------CTTCAGTTTggccttggctagcaaaaggatgacctttttatgtagatgagaccACTTATGTAAAAAAAAAGGTTTAAAAAATAATTTCTGCTAACTggaatgctttttgttgttgtttatttgtttgtttg---------tttgcagccataggagttttagccaattcagaggacttgctccccacaatttggaacattcctttggatttgacgaagtcaggaAGAGatgggagaaaagtgaaacaacaacaataaaaccccaagcataaacaaacaaaaagagttaagcaaaat-aacaaatgcacaattcatatgattactgagtgttctaatggtaag---- i panTro2.chr4_random C 0 I 54297 s ponAbe2.chrUn 4728033 2336 + 72422247 CTTGTGTATGCCGGGCAAGGCCAAACTGGCTCAAAAAGCAACCAGCTGCATTTGCAAGGGTGTGCCTGGAGTAGTTGGACTAGCCACCAACCTCATCCACTCAAGGAAGCAGGGAATGCATGTTTGTACCATGCATTTCGCTACAGGTACATTTCCTCTGAGGTtggtagcccaggttttcttctaggtgttttatggttttaggtcttacatttaactctttcatccatcttaacttaatttttgtttaaggtgtatgggtgtggcccagtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttacccattgcttgtttttgtcaggtttgtcaaagatcagatggctttagatgtgtggtgtcatttctaaggcctctgttctgttccattggtctatatatctggttttgtaccagcaccatgctgttttggttactgtagccttgtggaataatttgaagtcaggtactgtgacgcctctagctttgttgtttttgcttaggattatcttggctatgtgggctctttttaggttccatatgaaatttgaagtagtttttctaattgtgtgaagaaagtcaatggtagcttgatggagatagcactggttc------------tGGGAGATATGGCATTCAGGCACAGAAATGTCCTTGTGTtaggcgataccactcaggacataggcatgggcaaagacttcatcactagaacaccaaaagcaatggcaacaaaagccaaaattgaccaatgggatctaactaaactaaagaatatctgcagcacaaaagaaattatcatcagggtgaacaggcaacccacagaatgggagaaaattgttacaatctatccacctgacaaaaagctaatatgcagaatctacaaagaacaaatttacagg----aaaaaaacaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttcccagagaagacatttatacagccaatgaacatgtgaagcaaagcacatcatcactagtcattagagaaatggaaatcaaaaccacaatgagataaaatctcatgcacacttagaatggccatcattaaaaaatcaggaaacaacagatgctggacaggatgtggagaaataggaacacttttatacttttggtgggagtataaattagttcaaccattgtggaagacagtgtgacaattcctcaaggatctacaactagaaatatcatttgactcagcaatcccattactgggtatataccccaaaaattataaatcattctaatataaagatgcatgcacacatatgtttactgcagcactgttcacaacagcaaagagttggaaccaccccaaatgcccatcaatgacagactagttaaagaaaatgtggcatatatacaccatggaatactatgcagccataaaaaagaatgaattcatgtcttttgcagggacatgaatgaagccagaaaccatcattttcagcaaactaacacaagaacagaaaatgaaacaccacatgttctcactcataagtgggagttgaacaatgagaacacatggacacaggaaggggaacatcacacactggggcctgtcagggtggggggctaggggagggatggcattaggacaaatacctaatgtagatcatgggttgatgggtgcagcaagccaccatggcatgtgtatacctatgtaacaaaccggcatgttctgcacatgcaccccagaacttaaagtataatt-tttaaaaaaaGAAATTTGcttttaattaagcttttaatcatagaacttgtaaagaaaatccttttgaatcttttactaccacatcatagctgggacaaactgctgacattttaaaagtaacataaatatcaaacagaaagaactagacttaggaaccaaactcaggtttctgtagtgaacaggtcagaatattaacattgggttgtcaccactgctccttcaggtcttcagtttggccttggttcacaaaa-gatggccttattATGTAGATGAGACCATTTATGTAAAAAAAAAGTTTTAAAAAATACTTTCTGCTAACTGGAAT-TTTtttgttgttttttatttgtttgtttgtttgtttgtttTgcagccataggagttttagccaattcagatgccttgctccccacaatttggaacattcctttggatttgaccaagtcaggaAGAGATgggagaaaagtgaaacaacaacaataaaaccccaaacataaacaaacaaaaagagttaagcaaaacaaacaaatgcacaattcatatgattactgagtgttccaatggtaaggaga i ponAbe2.chrUn I 16576 N 0 a score=5522.000000 s hg19.chrUn_gl000243 16293 68 + 43341 GTGGTGAAGCCATGCGTGGTGATGTAGAATACTTCCACATCTCTGGTGAGGAGCTGCCCCTTGGGTCT s panTro2.chr4_random 1159511 68 - 6711082 GTGGTGAAGCCCTGCGGGATGATGTAGAGTACTTCCACATCCCTTGTGAGGAGCTGCCCCTTGGGTCT i panTro2.chr4_random I 54297 C 0 a score=52328.000000 s hg19.chrUn_gl000243 16361 315 + 43341 GAGTTTCTGGGAGGGGAGAGGGAGAAGCTGGGTGAGGCAGG------CATGAATCTTGAGGAGTCAGGGCTGGGGGACCACTCATATTCTCC---CGAGACCTgtgagtctctgggggactcctgggtg-catggggctgactcccacaggaacctggggatggctggagagtaactgggagccacaggagagtccctgaggcctgggggtgaagagatgaaagacacaggggtggagcaccgtgaggctcatgagtttgtaggtgattcctgggtgtggggggctgactccagctgaaatctggggttgtttggagagtagctg s panTro2.chr4_random 1159579 315 - 6711082 GAGTTCCTGGGAGGGGAGAGGTAGATGCTGGGTGAGGCAGG------CATGAATCTTGAGGAGTCAGGGCTGGGGGACCTCTCATATTCTCC---CGAGACCTgtgagtatctgggggactcctgggtg-catggggctgactcccgcaggaacctggggatggcttgagagtaactgggagccacaggagagtcccggaggcctggggttgaagaggtgaaagacataggggaggagcaccgtgaggctcgtgagtttgtaggtgattcctgggtgtggggggctgactccagctgaaatctggggttgtttggagagtagctg i panTro2.chr4_random C 0 C 0 s xenTro2.scaffold_1331 80177 261 + 94497 GAGTAACTGGGGCTTGTGGGAGAGTAGCTGGGACTTGTAGG------AGAGTAACTGGGGGATGTGGGGCTGTAA--------------------------CTGGGAGACGTTGGGGAGTAGCTGGGTGATGTCGGGCTG-----------TAGCTGGGAGAAGTTGGCGAGTAACTGGGAGACGTCGGGGAGTAACTGGGACTTGTAGGGCTATAGCTGGGGGAAGTGGGGGAGTAAC----TTGGGCTTGTGGGAGAGTAGG-------AAGGAGAGGTGGG---------GCTGTAAGATGGGGA-GGTTGGAGAGTAACTG i xenTro2.scaffold_1331 N 0 C 0 s proCap1.scaffold_96876 2767 319 - 7015 -----TCTGGGAGTGGTAGGAGAGTAGCTGGGGGACAGAGGTGATTCCCTGAGGGCTGTGGATGAAGAGATGGAAGACACCGGGGAGTAACCGGGGGAGTCCCGTGGGTTAGGAGGTGTGTCCTGGGGG-TGTTGGGGTGACACTTGCAGAAATCTGGGAATGGTAGGAGAGTAGCTGGGGGACAGAGGCGATTCCCCGAGGGCTGTGGGTGAAGTCGCGGAAGACAGCGGGGAGTAACTGGGGGAGTCCCGTGGGTTGTGAGGTGTGTCCTGTGTGTGTTGGGGTGCCTCTGGCGGAAATCGGGGAACGGTAGGAGAGTCGCTG i proCap1.scaffold_96876 N 0 C 0 a score=27014.000000 s hg19.chrUn_gl000243 16676 177 + 43341 ggagacaaaggagaccccccgagagctgggggtgaGCTGCTGGGTGATG-------GCAGTAAGAGCATGTGGTATATTATTGATGAACGTGGGGACTCTGAGGAAT--------CCTCAGAGGAGGACACGGGAGAGCCCAATGTCTTCATTGATTGCCCATCACGGTG--AGGACAGGGAAATGGGAGCTTG s ochPri2.scaffold_79887 308 162 - 5305 GGGGAGATGGGACAGCCCCCGTGGGTGGGTGGGGAGCTGCTGGGGGAGG-------GAAGGATGAACATGTGGTAGATGATGGAGGGCTCTGAGGACTCGGAG---------------CTGAGCCAGGAACATGACCGCTCAGGG--------GAGGGCGTGCCAGGAGG--GGCACATGGACATGGGCGCCTG i ochPri2.scaffold_79887 N 0 C 0 s panTro2.chr4_random 1159894 177 - 6711082 ggagacccaggagactccccgagagctgggggtgaGCTGCTGGGTGATG-------GCAGTAGGAACGTGTGGTATATGACTGATGAACGTGGTGACTCTGAAGAAT--------CCTCAGAGGAGGACACGGGAGAGCCCATTGGCTTCATTGATTGCCCATCACGGAG--AGGACAGGGAAATGGGAGATTG i panTro2.chr4_random C 0 C 0 s proCap1.scaffold_96876 3086 159 - 7015 GCTGACACAGGAGAGTACGTGAGGGCTCTGGGTGACTGGCTTGGTGAAG-------GCAGGAAGAAGATGTGGTACAGGGTGGACGAGCGTGGGGACTCTGAGGAGT--------CCAAGCAGAATGACAC------------------CGCTGATGAGGCCGCTGGAGC--TGGAGAGGGAACTGGGAAGTCA i proCap1.scaffold_96876 C 0 C 0 s xenTro2.scaffold_1331 80438 180 + 94497 GGAGAAGTGGGAGAATAACTGGGAGATGTAGGAGAGTAGTTGGGAGATGTAGGGGAGTAGGAAGGGGACGTTG----GGCTGTAGGAG---GGGGACGTTGGGGAATAGCTGGGGCTCTGGGGGGTGTAGC-------CCCCAGGGCTTCGGGGTTCATACGCAGGGGAGGTAGGAGAGTAACTTGGAGACATA i xenTro2.scaffold_1331 C 0 I 82 a score=10729.000000 s hg19.chrUn_gl000243 16853 84 + 43341 TGGGATTCTGGTGATGACAGAGGTGAGTGTGGTGAAGCCCTAGGGGATGGTGAATGGTAGCTCCGGATCCCTGGTGAGGAGCTT s proCap1.scaffold_96876 3245 72 - 7015 TGG------------GAGAGAGGGCAGTCTGAGGAAACCCCAGGGGAGGCTGGCAGAGAGACAGCTGTCCCTGACAGGGCGCGT i proCap1.scaffold_96876 C 0 C 0 s panTro2.chr4_random 1160071 84 - 6711082 TGGGATACTGGTGATGACAGAGGTGAGTGTGGTGAAGCCCTAGCGGATGGTGAATGGTAGCTCCGGATCCCTGGTGAGGAGCTT i panTro2.chr4_random C 0 C 0 s ochPri2.scaffold_79887 470 84 - 5305 CAGGGCCCTGGTGGGGACCCCAAGGGGTGGCCTGAAGCCCTAGGGGAGACTGCCGCCCACATGGGACTCCCTGGAGGTGAAGGG i ochPri2.scaffold_79887 C 0 C 0 e xenTro2.scaffold_1331 80618 82 + 94497 I a score=16975.000000 s hg19.chrUn_gl000243 16937 168 + 43341 CCCCTTAAGCAAGAGATTCTGAGAGGGGAGAGGAAGAAGCTGGGTGAGGCTCGCATGGACCTTGGGGAGTCTGGGCTGGGGGACCGTTCATAAGAAGAGCCAGACAAGACCCTACTGTTCTTAGGTGCAGACATGAT---TAGGAAACCTGCAGCTCCC--------AGGGGCCCGTA--C s ochPri2.scaffold_79887 554 178 - 5305 CCCTCGGGGCAGGGCTGGCTGGCACAGCAGAGAGAGCCAGAGGGCGAGGCTGGGCTGAGGCCTGGGGAGGCAGGAGCCAGGGAACCCTCCCCAGCAGAGTCACACAGGACCCCAGGCTCCAGCAAGGCAGACATGAT---TGGAGGACCTCCAACTCTCTCTGCCTTGGTGGCCTGTCTTC i ochPri2.scaffold_79887 C 0 C 0 s panTro2.chr4_random 1160155 168 - 6711082 CCTCTTAAGACTGAGTTTCTGAGAGGGGACAGGGAGAAGCTGGGTGAGGCTAGCATGGATCTTGGGGAGTCCGGGCTGGGGGAACGTTCATAGGAAGAGCCAGACAAGATCCTAGTGCTCTTAGGTGCAGACATGAT---TAGGAAAACTGCAGCTCCC--------AGAGACCCCTA--C i panTro2.chr4_random C 0 C 0 s proCap1.scaffold_96876 3317 172 - 7015 CCCCTCCGGTCGGCGTGAGCGGGGGTGGCGTGGGAGTATGTGGGAGTGACGGGCCTAGAGATTCCTGAGTCAGGGCTGGGAGACCTTTCTGGGGACAAGAGACGTTCGACCCCACTCTCCTTCGAGGTAGACATGGCGGAGGGGGAAGCTGCAGGTCCC-----CCGGCTCGCCTGC---- i proCap1.scaffold_96876 C 0 C 0 s xenTro2.scaffold_1331 80700 162 + 94497 CCCATAACAAAAGCCAACTCACCTGGGGAGGGAATGTAGGGACTTGAGGGCCCCGGGGATCCAGGAGAGCCAGGGGTGGGGGACCAAGCCGGGGAGTAACCTGGGCTGAAGCCGCTGGCATCGGAGGCGGCACTTGG---GGAGAAACCGGCAGCTCCC--------GGGGTC-------- i xenTro2.scaffold_1331 I 82 N 0 a score=-1418.000000 s hg19.chrUn_gl000243 17105 12 + 43341 CAATTTT------------CTAAC- s panTro2.chr4_random 1160323 12 - 6711082 TAATTTC------------CTGAC- i panTro2.chr4_random C 0 C 0 s ochPri2.scaffold_79887 732 24 - 5305 TGACTCCAGAGGTGGAGGGCTGAC- i ochPri2.scaffold_79887 C 0 I 28 s turTru1.scaffold_88292 1429 12 + 79048 CCCTCCT------------CTGAC- i turTru1.scaffold_88292 N 0 N 0 s proCap1.scaffold_96876 3489 12 - 7015 -TGCTTC------------CTGAGC i proCap1.scaffold_96876 C 0 C 0 a score=38299.000000 s hg19.chrUn_gl000243 17117 325 + 43341 TCGAAGAAGGAAGGA----------gtgtgtgtgtgcgcgcgtgtgtgtgtgtgtgtgtgtttgtgtgtgcggtgtgtgttt------------------gtgtgtgtgc-----------------ggtgtgAGGTA------------TGTGCCCCT----TAAGAAAATGGAAATCAACCAACCAATGagacagacagacagacag--acaga----GATTCACTTGCCCACGTGTTCTGT---CCTGTCCTC-TGAATCCGCTTCCAAGTCG-CAAGACACTGTGAGCTCCA-AGTCCACGCAG---AGTCCGCCAAACGC-TCCGGCCGCTGATCCGCTCCGCGAAGATCT---GAGTACAGGCCAGCCAGG--GTGGGTTTAAATAGCCTCGGGCGCAGCC s panTro2.chr4_random 1160335 320 - 6711082 CCGCAGAATGAAGGA----------GTCtgtgtgtg------tgtgtgtgtgtgtgtgtgtctgtgtgtg---tgtgtgttt------------------gtgtgtgtgt-----------------ggtgtgAGGTA------------TGTGCTCCT----TAAGAAAATGGAAATCAACCAACCAAAGagacagacagacagacag--acagacagaGATCCACTTGCCCAAGTGTTCTGT---CCTGTCCTC-TGAATCCGCTTCCAAGTCG-CAAGACGCTGTGAGCTCCA-CGTCCACGCAG---AGTCCGCCAAACGC-TCCGGCCGCTGCTCCGCTCTGCGAAGATCT---GAGTGCAGGCCAGCCAGG--GTGGGTTTAAATAGCCTCGGGCGCGGCC i panTro2.chr4_random C 0 C 0 s ochPri2.scaffold_79887 784 335 - 5305 TCGGAGAGAGAGAAA----------ACGAAtgtgtg------tgtgtgtgtgtgtgtgtgtgtgtgtgtg---tgtgtgtTTTAGAGAGAGAGAGATCACTTATGTGCTG-----------------TGTGTGTGGTAATGCGTCCCGGCTGAGCTCC-------------------TCTCCCAAACACGAGAATATGCCGTCACACAGAAACAGG----GAGTGACTCACCCAAGTGCTCTGTGGCTCTGGCTTCTTGTCACTGACTCTGAGTCG-CGTGACGCTCTGGGCAGCAGAGGTGGCACAG---GCAcctgctcctgc-tcctgctcctgctcTCCTCCCAGAGGATCT---GATCTGGGGC---CCTGGAAGCGGCCTTAAGTAGC--TGAGCGGGGCC i ochPri2.scaffold_79887 I 28 N 0 s proCap1.scaffold_96876 3501 349 - 7015 CCAGAAATGGCGGGAAAGGCCGCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg---tgtgtgtctgcgtgggtccgtgtgtctgtgtgtgtgCCTGGGGGCTTCTTTCGGCGTGCCTTGCAGTGTGT------TGTGTTCCTGCTCTGAGCAGTT-----TGGGCAATAGAAAAGGATAGAC-----GAGAG--GTAAA----GATTCACTCTCA---------------CCTTGCCTC-TCAGTCAGCTTCCAGGTCTCCGGGACGCTGCGAGCAGGA-GATCGGGGCAGGCAGCTCCGACGAACGCTTCCAGACGAGGCTGTGCTCTGAAAAGAGCTGGGGAGCAAAGGC-----AGA--ATGG----AAACATCTTTGAGTC----- i proCap1.scaffold_96876 C 0 C 0 a score=7948.000000 s hg19.chrUn_gl000243 17442 72 + 43341 ---TAGCAGCGGAAAGGGCGGAGCTTCACTCCTCCTTTCC--ATCAGTCACC--CCCAACTTTCCCAGGCTACACCTGG s panTro2.chr4_random 1160655 72 - 6711082 ---TCGCAGCGGAAAGGGTGGAGCTTCACTCCTCCTTTCC--ATCAGTCACC--CGCAACTTTCCCAGGCTACACCTCG i panTro2.chr4_random C 0 C 0 s proCap1.scaffold_96876 3850 77 - 7015 AAGCTGGAGAGG-AATGGTGGAGCTTC-CATCTCCTCTCTAAACCCATCCCCTTCTCCACCCTCCCACCCTGCTCCCAG i proCap1.scaffold_96876 C 0 N 0 a score=13640.000000 s hg19.chrUn_gl000243 17514 169 + 43341 TAGGAAACTGTTCTCCTGCTTTGATTTCATGCGCCACCTTTGGGACAATCTAAGAACTTACAAGTTTTCTTGGCCAGATATATTAGGAATTGTATGCACTGAAACACTGAAAACCAACTAGTGGTTCTGTGGTTCCCACGTTGTGGTTTTGACACCAGCAGCATCCTTG s panTro2.chr4_random 1160727 169 - 6711082 TAGGAAACTGTTCTCCTGATTTGATTTCATGCGCCACCTTTGGGACAATCTAAGAACTTACAAGTTTTCTTGGCCAAAGGTATGATGAATGAAATGCACGGAAACACTGAAAACCAACTGGGGGTTCTGTGGTTCCCACGTTGTGGTTTAGACACCAGCAGCATCCTTG i panTro2.chr4_random C 0 I 8056 a score=113141.000000 s hg19.chrUn_gl000243 17683 1297 + 43341 CCACaatcaaaccccggagatgcacagatctgtgttgtaacaagacctccccctgactctgatgcatggcagtttaagaaGTCTTTCCGTGTAAACGAAAAGACTTTGAAGAAAAGGTGGAGATATGCGTTGTATAAACATTCTTTTGCTCTGGAACCACGTAGAGACTTGGGAGCCAGTTGGGTGGAGCATTCGTTGGATGAGGGTGCTCGGGTTAGGAATATCAAGGTGTGGCTCCAGATAATCCAATCATGTAATTAAGATTCCAGTTATGCTCATCTGTTTTAAAATTCCGTTTGGGTAAATTCTTTGAGTCAGACTGAGAATGGCAAagcctcaaccccaatttccagggagggttgagagcctcgggtggagctgatcaccaatagcctatggtttaacccatcatgactatagaaggagatctccataaaaacccaaaaggactgggttcagagggcttctggataacacttcctggaaggtagtgcgcccctccccacatgccgggccccacatttatttctgaactttttgcaatgtccgctaaaatacaacggcaaatgtaagtgtttacctgcgtgctgtgagctcttccagcaaatgaatgcaactaaatctgggagtggtggcaacctgatttatagccagttgctgagaagcacaggtaaaacaacgtggggcttcccattgttattagtgtgggaggcctgtctggtgggactcggccctttggaatctaatgctatgtcccggtagatagcgtcaccattgaattagaagacacacaTATGTTGAGAATAATCTCTCTGGTCATTTGCTGCATGTCTTATTTACAATACATAATCAAATTTTTTATTCTGACCTTATGGCACCTGGGTTGAGAACCCATGATTTGAACCAAACATTGGTCTGTCACTTTCTGAGTTTGAAACTTTATTTTGCCTTTAGCGTTTTGTTACTGCTTtttcgttttcttttgtttcgtttcgtttctaagttc-ggggtatatgtgcaggatgtgcagatttgttactaaggtaaacgtgtgccatggtggtttgctgcacctgtcaacccatcacctaggtattaagcccagcatgcagtagctgtttttcttaacgctctgcctcccgaaaggccccagtgtgtgttgttccccttcctgtgtccatgtgatctcatttttcagctcccattataagtgagaatgtggtgtttggttttctttccctggattagtttgctgaggataatgacctcACATCACCAGTGTTTTTGTTTTTCAGTA s panTro2.chr4_random 1168952 1296 - 6711082 CCACaatcaaaccccggagatgcacagatctgtgttgtaacaagacctccccctgaccctgacgcatggcagtttaagaaGTCTTTCCGTGTAAGCGAAAAGACTTTGAAGAAAAGGTGGAGATATGCGTTGTATAAACATTCTTTTGCTCTGGAACCACGTAGAGACTTGGGAGCCAGTTGGGTGGAGCATTCGTTGGATGAGGGTGCTCGGGTGAGGAATATCAAGGTGTGGCTCCAGATAATCCAATCATCTAATTAAGATTCCAGTTATGCTCATCGGTTTTAAAATTCCATTTGGGTAAATTCTTTAAGTCAGACTGAGAATGGCAAagcctcaaccccaatttccagggagggttgagagcctcaggtggagttgatcaccaatagcctatggtttaacccatcatgcctatagaatgaggtctccataaaaacccaaaaggactggcttcagagagcttctggataacacttcccggaaggtagtgcgcccctccccacatgccgggccccacatttatctctcaactttttgcaatgtccgctaaaatacaaaggcaagtgtaagtgtttccctgcgtgctgtgagctcttccaggaaatgaatgcaacgaaatctgggagtggtggcaacctgatttatagccagttgctgagaagcacaggtaaaacaacgtagggctccccattgttattagtgagggaggcctctctggcgggactcgaccctttggaatctaatgctatgtcccggtagatagcgtcaccattgaattagaagacacacaTATGTTGAGAATAATCTTTCTGGTCGTTTGCTGCATGTCTTATTTACAATATGTAATCAAATTCTTTCTCCTGACCTTATGGCACCTGGGTTGAGAACCAA-GATTTGAACCAAACATTGGTCGGTCACTTTCTGAGTTTG-AACTTTATTTTGCCTTTAGCGttttgctcttgatttttcgttttcttttgtttcgtttcgtttctaagttctggggtatatgtgcaggatgtgcagatttattactaaggtaaacgtgtgccatggtggtttgctgcacctgtcaacccatcacctaggtattaaacccagcatgcagtagctgtttttcctaacgctctgcctcccgaaaggccccagtgtgtgttgttccccttcctgtgtccatgtgatctcatttatcagctccaattataagtgagaatgtggcgtttggttgtctttccctggattagtttgctgaggataatgacCACACATCACCACTGTTTTTGTTTTTTAGTA i panTro2.chr4_random I 8056 C 0 a score=31203.000000 s hg19.chrUn_gl000243 18980 205 + 43341 TAAAGAGTAGTATTTTATTGAATAAGATTTGCTCACAGGAAAATAAGCTTAAATCTACAATGAATGCCAGACTCTTCAGCAGAAAGCAATTTCCTCACTTTTCCACACACAATGGTTCCT-ACTAAGCGAAAATAAGCCATAAAATTTCATTCACAAATGTACT--ACTCTGTCTCAAAACATCTCACATAATCATGCACTGTACTAA s panTro2.chr4_random 1170248 205 - 6711082 TAAAGAGTAGTATTTTATTGAATAAGATTTGCTCAGAGAAAACTAAGCTTAAATCTACAATGAATGCCAGACTCTACAGCAGAAAGCAATTTTCTCACTTTTCCACACACAATGGTTCCT-ACTAATTGAAAAAAAGCCATCAAATTTCATTCACAAATGTACT--ACTCTGTCTCAAAACATCTCACATAATCATGCACTGTACTAA i panTro2.chr4_random C 0 C 0 s echTel1.scaffold_293800 7869 199 - 91003 TAAAGAATAGTACTTTATTGAACATGTTTTGTTCAGAGAAAAATAAATGTTAATCTACGATGACTGTCAGATTATTGAGTGGAAAGT--TTCCCTTACTG------ATGGCATGGTTCCTCAATTATGAAAAAAAAATTATAGAAACATATTCAC-AACGTAGTGAACTCTGTCTTAAAATAATCCACGTGATTATTCCCAACACTAA i echTel1.scaffold_293800 N 0 N 0 a score=3165.000000 s hg19.chrUn_gl000243 19185 38 + 43341 AGCCTTTAGATCAGTTCTTCCGTCAGGTTAAAGAAGTA s panTro2.chr4_random 1170453 38 - 6711082 AGCCATTAGATCAGTTCTTCAGTCAGGTTAAAGAAGTA i panTro2.chr4_random C 0 N 0 a score=-1430.000000 s hg19.chrUn_gl000243 19228 21 + 43341 TGATGGGCAATCAATGAAGAT s ochPri2.scaffold_3973 110739 5 + 205435 ----------------AGGAC i ochPri2.scaffold_3973 N 0 C 0 s panTro2.chr4_random 1390118 21 - 6711082 TGATGGGCAATCAATGAAGCC i panTro2.chr4_random N 0 C 0 s ornAna1.Ultra269 766761 2 - 1628958 -----------------GG-- i ornAna1.Ultra269 N 0 I 2355 a score=16729.000000 s hg19.chrUn_gl000243 19249 130 + 43341 ATTGGGCTCTCCCGTGTCCTCCTCTGAGGATTCCTCAGATCCCCCACGTTCATCAATAATATACCACATGCTCTTACTGCCATCACCCAGCAGCtcacccccagctctcggggggtctcctgtgtctccc s panTro2.chr4_random 1390139 130 - 6711082 ATTGGGCTCTCCCGTGTCCTCCTCTGAGGATTCCTCAGAGTCCCCACGTTCATCAATAATATACCACAGGTTCTTACTGCCATCACCCAGCAGCtcacccccagctctcgggggatctcctgtgtctccc i panTro2.chr4_random C 0 C 0 s ochPri2.scaffold_3973 110744 128 + 205435 ACCCGATTCTGCAGGGTCATCCCCAGGGCCTTACTCTGAGTCCTCAGGGGTGTCCACCACCTACCACATGTTCACCCTTCCCTCCTCATGCAGCTCAACCCCTACCCGAGGGGATTGCCCCGGCTCCC-- i ochPri2.scaffold_3973 C 0 I 91 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=8824.000000 s hg19.chrUn_gl000243 19379 98 + 43341 agctactctccaaacaaccccagatttcagctggagtcagtcccccacacccaggaatcacttacaaactcacgagcctcacggtgctccacccctgt s panTro2.chr4_random 1390269 98 - 6711082 agctactctccaaacaaccccagatttcagctggagtcagccccccacaccagggaatcacctacaaactcacgagcctcacggtgctccacccctgt i panTro2.chr4_random C 0 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I e ochPri2.scaffold_3973 110872 91 + 205435 I a score=40405.000000 s hg19.chrUn_gl000243 19477 438 + 43341 gtctttcatctcttcacccccaggcctcagggactctctggtggctcccagttactctccagccatccccaggttcctgcgggagtcag---tcccatgcacccaggagtcccccagagactcacAGGTCTCGGGAGAATATGAGCGGTCCCCCAGCCCTGACTCCTCAAGATTCATGCCTGCCTCACCCAGCTTCTC--------CCTCTCCCCTCCCAGA-AACTCAGACCC-----AAGGGGCAGCTCCTCACCAGAGATGTGGAAGTACTCTACATCACCCCGCAGGG----------CTTCACCACTCTCACATCCATCATCAACAGAATTCCACAGCTTTACG---TTTCCCTTT------CCTAACCA------------------------------------------AGCAGGACAGTCACTCATGTC-------------ATTGTGTTCTC--CCGTGTCCTCCTCTGGAGATTCTTCACAGTCACCTCATTCATCAATAATATACCATATGTTCTTACT s panTro2.chr4_random 1390367 438 - 6711082 gtctttcatctcttcacccccaggcctcagggactctcctgtggctcccagttactctccagacatgcccaggttcctgcgggagtcag---ccccatgcacccaggagtcccccagagactcacAGGTCTCGGGAGAATATGAGCGGTCCCCCAGCCCTGACTCCTCAAAATTCATGCCTGCCTCACCCAGCTTCTC--------CCTCTCCCCTCCCAGA-AACTCAGACCC-----AAGAGGCAGCACCTCACCCGGGATGTGGAAGTACTCTACATCACCCCGCAGGG----------CTTCACCACTCTCACATCCATCATCAACAGAATTCCACAACTTTACG---TTTCCCTTT------CCTAACCA------------------------------------------AGCAGGACAGTCACTCATGTC-------------ATTGTGTTCTC--CCGTGTCCTCCTCTGGAGATTCTTCACAGTCACCTCATTCATCAATAATATACCATATGTTCTTACT i panTro2.chr4_random C 0 I 17366 s ochPri2.scaffold_3973 110963 487 + 205435 GTCTCCCATTCCCTCAGTACAAACACAGAGGCTCTCTCCCGTGGCACCTAGCTACTCCCCAACTATGCCCACACTTCAGCCTGAGTCAGACAACCTATGC-CATGGGATTCCTGC---------CAACTCT---GGGAACTTAA--GGTCCCCCAGTCCTGTGTGCATCAGTCTGTCTTCCACATCATCCTGCTCCTTGAGCAGCAGTTGTTTCATTGTAGAGGAGTCAGCCCCTGTGAATGAGGGAGCTCCTAGTCCTGCA---GGAAATTCACCCTGTTACTCCCCCATGAACCCTCTCCCACCACCACTGTCTCCTCTGTCTCCTAGCTACTCCCCTACCGTCCCGAGATTTCTCGGTGAGGACACCAACCAGAGGGAGTTTTGCCTGGAGGAGAGGCCAGGCTCATTGGGAGCAGTAGACTGGGCCCTCATGTCTACCATGGAGGAGATTGGGGTTCCATCTGAATGTTCTTCTGAGGGCACACCAGAG---CCTGATTCCACA----------------------- i ochPri2.scaffold_3973 I 91 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=81274.000000 s hg19.chrUn_gl000243 19915 821 + 43341 GCCATCATCCAGCAGCtcacccccagccacccatgagtctcctgtctgtcccagctattctccaactacgcc--cagatttcagcagga----------------------------gtctctaccccacaccccagaaacacctacaaactcacagacctcagtgagatcctc-------gccagtctctctcatgtcttcacccccagcccttacggaccctcca--gtctgtccc---------agctactctccaaccacgcccacatttcagcgcgggtcagttccaggaacccagggatcaccaccaagcccaccactttcactgaattactccccagtctctagcacgtctttatctccaa--ccctcagggagtcgcctgtctgtcccag----ctactctccaaacacgcccacacttcagcg----ggagtccgttgcaggcacccagaaatcaccaccaaactcaccaatttcactgcgttactccccagt---ctctctcatgtcttcaccatccctcagggaccctcccgtctgtc--ccagctactctccaaccacgcccacattt--------------cagctggagtcagtt----------------ccaggcaccccggaatc----------accaccaaactcacca--------------atttcactcagtt---------------------------actcctcagtctctagcacgtctttatctccaaccctcagggactctcctgtgtgtcccagctactctccaaccacgcc--cacacttcagagggagtcc-------------------------gttccaggcacccaggaatcaccaccaaactcaccaatttcactca---attactctccagtctctctcatgtcttc----------accagccct-----------cagggactctcctgggggtcccagctactctccaaccacgcccacatttcagctgcagtcag s ochPri2.scaffold_3973 111450 958 + 205435 GTCTTCACCCCGC--CTGAGTACC-----CTCACAATCCTCCCTTGGGTCCCAGCGACGCCTTCACTGTGCAAGCATCCTCCACAAGGAACCCCACATATGGTGCCATATCCCCATTGGCTTCACGCCACCTGTCATTGTCACCAACACAACCATGCCCATCCATACGTCACTCTCCCCCTGCTGGCACCTCCTCCCCTTCCACACCCAATTCTGCAGTGCCATCCAATGCCCATCCCGTGGCACCTAGCTACTCCCCAACTATGCCCACACTTCAGCCTGAGTC----------------------------AGACAACCTGTGCCATGGGATTTCTGCCAA--CTCTGGGAACTTAAGGTCTCCCAGTCCCGTGTGTATCAGTCTGTCTTCCACATCATCCTGCTCCTTGAGTA-GCAGTTGTTTCATTGTGGAGGAGTCAGCCCCCGTGAATGAGGGAGCTCCTAGTGTGGCAGGAAATTCACCCTGTCTCTCCCCCATGAACCCTCTC------CCACCATC--------ACTGTCTCCTCTGTCTTCCAGCTACTCCCCTACTGTCCCGAGATTTCTCGGTGAGGACACCAACCAGAGGGAGTTCGGCCTCGAGGAGAGGCCAGGCTCATTGGGAGCTGTAGACTGGGCCCTCATGTCTACCATGGAGGAGATTGGGGTTCCATCTGATTGTTCTTCTGAGGGCACACCAGAGCCTGACTCCACAGTCTTCACCCCGCCTGAATC-----CCCTCA-CAATCCTCCCTTGGGTCCCAGTGACCCCTTCACTGTGCAAGCATCCTCCACAGGGAGTCCCACATATGGTGCCTTGTTCCCATTGGCTTCACGCCACCTGTCATTGTCACCAACACAACCATGCCCATCCATACATCACTCTCCCGCTGCTGGCAACTCCTCCCCCACGAAAACCAATTCTGCAGTGCCATCCAATGCCCATCCCGTGGCACCTAGCTACTCCCCAACTATGCCCACACTTCAGCCTGAGTCAG i ochPri2.scaffold_3973 C 0 I 1281 s panTro2.chr4_random 1408171 821 - 6711082 GCCATCATCCAGCAGCtcacccccagccacccatgactctcctgtctgtcccagctactctccaactacgcc--cagatttcagcggga----------------------------gtctctaccccacaccccagaaacacctacaaactcacagacctcagtgagatcctc-------gccagtctctctcacgtcttcacccccagcccttacggaccctcca--gtctgtccc---------agctactctccaaccacgcccacatttcagcgcgggtcagttccaggaacccagggatcaccaccaagcccaccactttcactgagttcctccccagtctctagcacgtctttatctccaa--ccctcagggactcgcctgtctgtcccag----ctactctccaaacacgcccacacttcagcg----ggagtccgttgcaggcacccagaaatcaccaccaaactcaccaatttcactgcgttactccccagt---ctccctcatgtcttcaccatccctcagggactctcccgtctgtc--ccagctactctccaaccacgcccacattt--------------cagctgcagtcagct----------------ccaggcaccccggaatc----------accaccaaactcccca--------------atttcactcagtt---------------------------actcctcagtctctagcacgtctttatctccaaccctcagggactctcctgtgtgtcccagctactctccaaccacgcc--cacacttcagcgggagtca-------------------------gttccaggcacccaggaagcaccaccaaactcaccaatttcactca---cttactctccagtctctctcatgtcttc----------accagccct-----------cagggactctcctgtctgtcccagctactctccaaccacgcacacatttcagctggagtcag i panTro2.chr4_random I 17366 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=3352.000000 s hg19.chrUn_gl000243 20736 36 + 43341 ttccaggcaccccggagtcaccaccaaactcaccag s panTro2.chr4_random 1408992 36 - 6711082 tcccaggcaccccggagtcaccaccaaactcaccag i panTro2.chr4_random C 0 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I e ochPri2.scaffold_3973 112408 1281 + 205435 I a score=3125.000000 s hg19.chrUn_gl000243 20772 37 + 43341 tttcactgagttactccgcggtctctctcatgtcttc s panTro2.chr4_random 1409028 37 - 6711082 tttcactgaggtactccccggtctctctcatgtcttc i panTro2.chr4_random C 0 C 0 s ochPri2.scaffold_3973 113689 37 + 205435 TTTCAGATGGTTCTTCCACCATCACCAGTGTCCCAGC i ochPri2.scaffold_3973 I 1281 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=181530.000000 s hg19.chrUn_gl000243 20809 747 + 43341 acccccagccctcagggactctcctgtgtgtcccagctactctcctaccatgcccagatttcagcgggagtcagttccaggcacccaggtatcacctacaaactcagcagtttcactgagttactccccagtc----tctctcatgtcttcacccccag---ccccctgggactctcctgtctgtcccagctcctctcccaccacgcccagatttcagcgggagtcagcctcccacactccggaatcacctacagactcacagacttcactgaggtcctccctggtctctctcaggtctttgccctcagcccacagggactcttgtgtctctttcagctactgtcaaaacttctctagattccagctggagtcagttccaggcacccacgatacaccaccgaactcac--gaatttcactgacttactcccca--gtct-ccctcatgttctcacccccagccctcagggactcttctgtctctctcagctactctccaaccatctccagatttcacctggagt-cagcttcccgcacccaggaatcacctacaaactcacggaccttactgcaaccctcccccatttctttcacctcttcaccccctgccttcagggactctcctgggtctcccagcttctctccagccttccccggatttctgccacagtcagccccaggcacccaggaCAACCCTAGACACTCACAGGCCTCACGAGACTATCTCCCTATGACCTGTACCTATACAGGGATGGCTCC s panTro2.chr4_random 1409065 747 - 6711082 acccccagccctcagggactctcctgtgtgtcccagctactctccaaccatgcccagatttcagcgggagtcagttccagacacccaggtatcaccaccaaactcagcagtttcgctgagttactccccagtc----tctgtcatgtcttcacccccag---ccccctgggactctcctgtctgtcccagctactctcccaccacgcccagatttcagcgggagtcagcctcccacactccggaatcacctacagactcacagacttcactgaggtcctccctggtctctctcaggtctttgccctcagcccacagggactcctgtgtctctttcagctactgtccaaacttcgctagattccagctggagtcagttccaggcacccacgatacaccaccgaactcac--gaatttcactgacttactcccca--gtct-ccctcatgttctcacccccagccctcaaggactcttctgtctctctcagctacactccgaccatctccagatttcacctggagt-cagcttcccgcacccaggaatcacctacaaactcacggaccttactgcaaccctcccccatttctttcacctcttcaccccctgccttccgggactctcctgggtctcccagcttctctccagccttccccagatttctgccacagtcagccccaggcacccaggaCAACCCTAGACACTCACAGGCCTCACGAGACTATCTCCCTATGACCTGTACCTATACAGGGATGGCTCC i panTro2.chr4_random C 0 I 24211 s ponAbe2.chrUn 5903876 747 + 72422247 acccccagccctcagtgactctcctgtctgtcccagctactctccgtccacacccagatttgagtgggtatcagttccaggcacccaggaatcacctacaaagccaccagtttcacagagttactccccagtc----tctctcttgtcttcacccctag---ccccctaggactctcctgtgtctcccagctactctcgtgccatgcccagatttcagcaggggtcagcctcctacactccggaatcacctacagactcacagacctcactgataacatccctggtctctctcagttctttgtcctcagcccacgaggactcttttgtctctttcaggtactctcaaaacttctctagattccagctagagtcagttccaggcacccaggacacaccaccaacctcac--caatttcactgacttactctcca--gtct-ctctcatgtttatacccccagccctcagggactcttctgtctcttttagctactctccaactatctctagatagaagctgaagt-cagcttcccacacccacgaatcacctagaaagtcacagaccttactgcatccctcccccatttctttctcttcttcaccctcagccttcagggactctcctgtgtctcccagcttctttccagccttccccagatttctgccgcagtcagccacatgcacccaggagcaccatggaaacttactggcctcacACGACTATTTCCTTATGACCTGTATCTATACAATGATGGTTCC i ponAbe2.chrUn N 0 C 0 s ochPri2.scaffold_3973 113726 616 + 205435 ACTCTCACACCTTAATCCCTTTCCTGTTTCAACTAGCTACTCCCCAACAATGCATGGATTTCCACCTGAGTCAG----------------ACCACGT------------GTTTCAGGGGACTGCTTGTGAGTCGGGGCCTTTAAGGTCTCCCTGTCCTGGGTTCCTCAGTGTCTCTTCTATCTCATCCTCTTCTTTGCACACCAACATGACAGCTGAGGGGAAGTCAGCCCTCCAGACTCAGGGAACTTGTGGTGTTTCCAGAACTTCACAATGTTCCTCTCCCCCGACTGTCATCCCATCACATCTATCTCTCAGTCTTTCTTCCATCTCTTCTTGCAACTCTCCCACTGGCCCCACAATTCTGGGTGAGTCAGCCCTACTGAACTCGAGCAGAC--TCAGTCCCACAGAGATTTGGGGGAGCTCCTCCCCACTGTCTGCCCTCACGT------CTCCAGCTCTCATAGATGCTTCCATGTTGCTTACCAACTACCCAAGTGACCCCATG-------TGGAGCACGGCTTCCAACCTCCAGG-------------CTCAGG-------CTGCA--------------CTCTCCTCTCCTCATTTCC------CAGGGG---------------------------AGACTGCCCA-----CCTGACAGGGCCAATACCTGCACCCCTGGAGGCCTCT-----CTCACTTGCTTTGCCACATCCACTCCTTCTTTC------------------------ i ochPri2.scaffold_3973 C 0 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=95295.000000 s hg19.chrUn_gl000243 21556 363 + 43341 CACGCATCCCTCAGTGACCCCA----AACCCATCTCCACTTACACTCAGACACTCCCAGGGCCTGACAGCTACTCCCCGTTATTGTCCTTCAGTTCGAAGCCCTGGCCAATCTACTAGCCCACATGACGCAGTTACATGGCCATTTCTCCACATTTCTGGTGAGGGCCCCACAACCAGCCGCACAAGAGCCCCTCCTGCATTCCGTCCTCACACGCAGGCCTGTCCATCTACTTGCTACTGTCACACTCTTGCCAGCAGAAGAGGCCCCTGTAATGGCCGATATCACCACCCAG---TCTATCCTCACCCCACAGCTGTGCAGCAGGACCCTCCTGCTGGCCCACGTGGCTGCCAGAGCCCATGCTGGCA s ochPri2.scaffold_3973 114342 297 + 205435 CCCAGAGTCCTTGGAGACTCTGCCATGCCCCACCTC----TACGCTCAGAGTCATCCA---TCTCACGG------------ATTGCT-------------TCCTGAGAGAGCCACACACACCCACAA---------------------CCCCAGTCCCAGTCTGGCCT------------GCAACAGAGACCATTTCAGTGGTCGCCCTCACACTCACAGCTGCCCTTCCACTTGCTACTGTCACGGGGTGGCTCACAGAAGAGGTGCTGGTAAGCGGCATCCTCATCACCCTGGCCCGTATGCTCCTTGAGCACC-------CAGGGTCATCTCCCTAGCACA-GTGACTACCAGTGCCCACGCAGGCA i ochPri2.scaffold_3973 C 0 N 0 s ponAbe2.chrUn 5904623 363 + 72422247 CACGTATCCCTCAGTGACCGCA----AACCCATCTCCACTTACAGTCAGACACACCCAGGTTCTATCAGCTACTCCCCGTTATTGTCCTTCAGTTCGAAGCCCTGGCCAATCTACTAGCCCCCATGATGCAGTTACCTGGCCATTTCTCCACATTTCTGTTGAGGACCCCACACTCAGTGACAGAAGAGCCCCTTCTGCATTCCATCCTCACACGCTGGCCTGTCCATCGACTTGCTACTGTCACACTCTTGCCAGCAGAAGAGTCTCCTCTAATGGCCAATATCACCACTCAG---TGTATCCTCACCCCACAGCTGTGCAGCGGGAGCCTCCTGCTTGCCGACGTGGCTGCCAGAGCCCGTGCTGACA i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1434023 363 - 6711082 CACGCATCCCTCAGTGACCCCA----AACCCATCTCCACTTACACTCAGACACTCCCAGGGCCTGACAGCTACTCCCCGTTATTGTCCTTCAGTTCGAAGCCCTGGCCAATCTACTAGCCCACATGACGCAGTTACCTGGCCATTTCTCCACGGTTCCCGTGAGGGCCCCACACCCAGCCGCACAAGAGCCCCTCCTGCATTCCGTCCTCACACGCAGGCCTGTCCATCTACTTGCTACTGTCACACTCTTGCCAGCAGAAGAGGCCCCTGTAATGGCCGATATCACCACCCAG---TCTATCCTCACCCCACAGCTGTGCAGCGGGTCCCTCCTGCTGGCCCACGTGGCTGCCAGAGCCCATGCTGCCA i panTro2.chr4_random I 24211 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=21621.000000 s hg19.chrUn_gl000243 21919 89 + 43341 CGACGCTCCAGCAGGTCGGCGTCCCTGCGGGACACACTACCGGTGACATGGCTAGCATGACCCTCCTTCCTGGCAGTGACACTGTTGAT s ponAbe2.chrUn 5904986 89 + 72422247 CGAACCTCCACCATGTCGGCATCCCTGTGGGCGACACTACCAGTGACATGGCTAGCATGACCCTCCTCTCTGGCAGTGACATTGTTGAT i ponAbe2.chrUn C 0 C 0 s panTro2.chr4_random 1434386 89 - 6711082 CGACGCTCCAGCAGGTCGGCGTCCCTGCGGGCCACACTACCGGTGACATGGCTAGCATGACCCTCCTTCCTGGCAGTGACACTGTTGAT i panTro2.chr4_random C 0 I 2462 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=11747.000000 s hg19.chrUn_gl000243 22008 56 + 43341 GTG-AACCCCGGTTTCACATCTGTCATTTGTAAATAGGACCATTTTCCCTTTTCGCT s panTro2.chr4_random 5395702 56 + 6711082 GTG-AACCCCAGTTTCACATCTGTCATTTCTAAATAGGACCATTTTCCCTTTTCGCT i panTro2.chr4_random n 2462 I 67912 s ponAbe2.chrUn 5905075 57 + 72422247 GTGCGCCCCCAGTTTCAGATCTGTGATTTTTAAATAGGGCCATTTTCCCTTTTCTTT i ponAbe2.chrUn C 0 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=66061.000000 s hg19.chrUn_gl000243 22064 274 + 43341 CTCCCTTCCATTCACAGGGCTTTTCATTCTCTCTGTTTCTGCCTCCGTTTCAGATATTTACTCACC---TTTTTCTCTCTCACTATGTCTGCCGTGGTCTCCATTAGAGTGCGCCAcataagatttccccattaaaagtcatgaattgagtggcttttagtatacctgtggttgtgcacattcaattttaattcgcaatccattgtagaacgtcttatcacccccgaccagagaaaaaccctgtagacattagtcactcctcattcTGTCTCAAACC s panTro2.chr4_random 5463670 274 + 6711082 CTCCCTTCCATTCACAGGGCTTTTCATTCTCTCTGTTTCTGCCTCCGTTTCAGATATTTACTCACC---TTTTTCTCTCTCACTATGTCTGCCGTGGTCTCCATGAGAGTGCGCCAcataggattcccccattaaaagtcatgaattgagtggcttttagtatacctgtggttgtgcacattcaattttaattcgcaatccattgtagaacgtcttatcacccccgaccagagaaaaaccctgtagacattagtcactcctcattcTATCTCAAACC i panTro2.chr4_random I 67912 C 0 s ponAbe2.chrUn 5905132 277 + 72422247 CTTTCTTCCATTCACAGGGCTTTTCTTTCTCTCTGCTTCTGTCTCCATTTCAGATATTTACTCACCCTTTTTCTCTTTTTCACTATGTCTCCCGTGGTCTTAATGAGAGTGCGCCAcataagattccctcattaaaagtgatgaactgagtggcttttcgtatacttgttgttgtgcacattcaatttcaattcacaatccattttagaatattttatctccccctaccagagaaaaaccctgcaagcgttaatcattcctcattctgtctcaaacc i ponAbe2.chrUn C 0 I 8927 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=21861.000000 s hg19.chrUn_gl000243 22338 281 + 43341 ATcagggcctgatgggaaggcactttcgtctgtgggggacccatgccctgcttctccgtggcgcg---gtttttttttttttcctgccatagatccctcacctctccttcctcaaatctcaccttcccctcttgggtcttctgtctgccttggggtacacctagcggtccgaggtgcactgtgggctcgaaccagggactccagtgtccctgaggcccagcgcaaggcctgatggaaagacactttcgtccgtgtggaagacccagtccccgcttctccgtggc s panTro2.chr4_random 5463944 283 + 6711082 CTcagggcctgatggaaaggcagtttcgtctgttggggacccattccctgcttctccgtggcgcgtttttttttttttttttcctgccatagatgcctca-ctctccttcctcaaatctcaccttcccctcatgggccctctctctgccttggggtatacctagaggcccgaagttcactgtaggctctaaccagggactccagggtccctgaggcccagcgcaaggcccgatgggaagacactttcgtccttgtggaggacccagtccccgcttctccgcggc i panTro2.chr4_random C 0 I 1483 e ornAna1.Ultra269 766763 2355 - 1628958 I e ponAbe2.chrUn 5905409 8927 + 72422247 I a score=121746.000000 s hg19.chrUn_gl000243 22619 1452 + 43341 aggtttttttttt---ctctgccccatgtgcctcaccttcccctcttgtgccttctgcacgctttggggtacacctagcgacccggggcacaccctggtctcgaaccatggaagccagattccactgggccaagctcagtggctgatgggaagacacgttcttcctcggggacccaggctctgcttctctgtggcgttttttttttt--ttttccccagttgcctcactttcccgtcatgggctttctgcccgccttgaggtacccctagccgacccgaggcacaccgttgttttgaggcagggatgctagggtctccggggcccagtgcagggcttatgggtagggacgttcgtccatgtgggacccagtccccacttctgggcggcacagttttttattttattctctgccccaggtgtctcacctttccctcatgggccttctgtctgtcttggggtacccctagcaggccgaggcgcacgctgggctcgagccagggataccagggtccccggggcacagtgcaagcgctgatgggaagacagtttcttctgtgggggacccaggccccgcttatccgaggcacagttg------tttttttctctgccccacgtgcgtcaccttcccctcatgggccttctgcttgcttttgggtacccctagcggcctgaagcacaccctggtctcgaaccaggaatgccagggtcccttgggcccagcgcaagtgctgatgggaagacactttcgtccgttggggacccaggctccgcttcttcgtcgtgcag--ttttttttttctgccacaggtgcctcacctctccttcctcaaacctcaactgcccctcctgggatttctgcccgccttgtgttacccctagcaggcccgaggcgcacccggggctcgaaccggggtctccagcgtccacagggcccagcgcagggactgatgggaaggcattttcactcttgggggacccaggcccagcttctcctaggcgcggcttgttttcttttttttttctgccacaggttcctcacctctcctccctcaaacgtcaacttcccatcatgggctttctgttcgacttggggtacccctagcggcccaaggcgctccctggactcgaaccatggatgccagggtcaccggggcctagcgcaggcgctgatgggaaggtaccttcatccgtgggtacccaggccccgcttctcaaagctgcggttttttttc-tcctccccaggtgcctcaccttcccctcattggccttctgcctgctttggggtaccacgagcaggcccgaggcgctgccgggtctccaatcagggtcgccaggttctcggggctagcgcaggggctgatgggaaggcactttcatcagtggggacccaggcccggcttctccgaggtgctgatatatacatatatatatatatacatatatatatgtatatatatatat s panTro2.chr4_random 1436937 1451 - 6711082 tggttttttttttttcctcttgcccaagttcctcaccttcccctcttgtgccttctgcacgctttgggctacccctagcgcctcgaggcacaccctgggctcgaaccatggaagccagcttccacagggccaagcgcagtggctgacgggaagtcctgttcttccttggggacccgggctctgcttctctgtggcgttttttttttttcttttccccaggtgcctcactttcccgtcatgggctttctgcccgccttggggtaaccctagccggccagaggcgcacccttgttttgagcccgggatgctagtgtctccggggcccagtgcagggcttatgggtagggacgttcgtccatgggggagccaggccccacttctgcgcggcgcagttttttattttgttctctgccccaggtgtctcacctttccctcatgggccttctgtctgtcttggggtacccctagcaggccgaggcgcacgctgggctcgagccagcgataccagggtccccggggcgcagtgcaagggctgatgggaagacagtttcttctgtgggggacccaggccccgcttatccgcggcacggttgttgttttttttttctctgccccacgtgcgtcaccttcccctcatgggtcttctgcccgc-tttgggtacccctagcggcctgacgcgcaccctgatctcgaaccaggaatgccagggtcccctgggcccagcgcaagggctgatgggaagacactttcgtccattggggacccaggctccgcttctctgtggtgcagttttttttttttctgccacaggtgcctcacctctccttcctcaaacctcaactgcccctcatgggatttctgcccgccttgtggtacccctagcgggcccgaggcgcacccggggctcgaaccggggtctccagcgtccacagggcccagcgcagggactgatgggaaggcattttcatccttgggggacccaggcccagcttctcctaggcgcggcttgttttcttttttttttctgccacaggttcctcacctctcctccctcacacgtcaacttcccatcatgggctttctgcttgacttggggtacccctagcggcccaaggcgctccctggactcgaaccatggatgccagggtcgccggggcccaacgcaggggctgatgggaaggtgccttcatccgtgggtacccaggccccgcttctcaaagctgcggtttttttttgtctgccccaggtgactcaccttcccctcactggccttctgcctgctttggggtaccacgagcaggcccgaggtgctcccgggtctccaatcagggtcgccaggttctcggggctagcgcaggggctgatcggaaggcactttcatcagtggggacccaggcccggcttctccgaggtgctg--------------atatatatatatatatatatgtatatatatacat i panTro2.chr4_random I 2462 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I e ponAbe2.chrUn 5905409 8927 + 72422247 I a score=2939.000000 s hg19.chrUn_gl000243 24071 69 + 43341 acatatatatatgtatatatatatataca----tatatatatat------------------------------------------------------------------atatatatatatatatatatatatatata s panTro2.chr4_random 5465710 139 + 6711082 atatatatatatgtctatatatatatatatgtctatatatatatgtctatatatatatatatgtctatatatatatgtctatatatatatgtctatatatatatatagacatatatatatatatatatatatatatata i panTro2.chr4_random I 1483 n 0 e ornAna1.Ultra269 766763 2355 - 1628958 I e ponAbe2.chrUn 5905409 8927 + 72422247 I a score=153934.000000 s hg19.chrUn_gl000243 24140 1733 + 43341 tattttttttttctgccacaggtgactcacctctcctcccttaaatctcgccttcccctcgtgggctttctggcttccttagggtaccctagcatgccagagtctcttctggtccttgaactagggtcgccagagtccaggggg-ccagcgcaggggctgatgagaaggcactttcgtccgtgggagaaccaggccccgcttctcttccgcacgtttttttttttttctgccgcaggtgcctcacctctcttccctcaaacctcacctttacctcatgggccttctgcccgctttggggtacacctagcgggcccaaggtgcacccaggcctagaaccagggtcgcctgggtccacggggcccagctcagggactgatgggaaggcacttttttcccatgggagacccaggccccacttctctgtggcgcggtttctttttcttttctgccacaagtgtctcacctctcctccctcacagctcaccttcctctcatgggctttccaccgcgttggggtacccctagtggcccgaggctctccctgagctcgaaccagggactctaggttccccggggcccagtgcaggggctgatgggaaggcactttcatccgtggggtacccaagccccacctctccgcggcgcgggtttcttttttttctttttctgtgacaggtgcctcacctctcctccctcaaaactcaccttcccctcacgggctttgtgtccccaaagccccccttggggtgcacttagcggccgaggcacaccctgagctcgaacgagggacactagggtccctgggtcccagtgcagggactgatgggaagacactttcgtctgtggggcacccaggccgtgcttctccgcggcgaagtttttctttttttctctgccccaggtgcctcaccttccccttaggggctttctgcccaccttggggaacccctactgtcccgaggcgtaccccagggtcaaaccagggacgccagggtccccagggcccagcgaaggggctgatgggatggcactttcatccgtgggggacgcaggcactgcttctcggctgagcgtt--tttttttctctgcctcaggtgcctcaccttcccctcatggaccttttgttcgctttgtggtaccccaagctgtcccgaggcgcaccctgggctcgaaccagggtcgccagggtccaccaggcccagcatagggcctgatgggaaggcactttcatccgtgggggacccaggccccgcttctctgagacgcggtcctcttttttttttttttttttctgcccctggtgcctcacctctcctcccacaaacttcaacttccactcatgggccttctgtccaagttggggtacccctagtcgcctgaggcacaccctgggcgtgaaccagggatgcccgggtccctggggcccagcgcaagggctgatgggaaaaaactttcgtccccggatgacccagacaccgcttcgcggcgcatttttttttcttctttgccccaggtgtctcaccttcccctcatgggccttctgcctctctgcgcctgcgccggcgctgtgggcctctctgcgcctgcgccggcgctgtgggcctctctgcgcc-tgcgccggcgctgtgggcctctctgcgcctgccccggcgctgtgggcctctctgcgcctttcgccagcgctgtgggcctctctgctcctgcgccggcgctgtgcgcctttgcgagggcgga s panTro2.chr4_random 1438388 1703 - 6711082 ttttttttttttctgctacaggtgactcacctctcctcccttaaatctcgccttcccctcatgggctttctggcttccttagggtaccctagcatgccggagtctcttctggtccttgaactagggtcgccagagtccagggggcccagcgcaggggctgatgagaaggcactttcgtctgtgggagacccaggccccgctcctcttccgcacggttttttttttttctgccgcaggtgcctcacctctcttccctcaaacctcaccttcccctcatgggccttctgcccgctttggggtacacctagcgggcccgaggtgcacccaggcctagaaccagggtcgcctggttccacgggtcccagctcagggactgatgggaaggcactttttttccatgggagaccca-gccccacttctccgtggcacggtttctttttcttttctgccacaagtgcctcacctctcctccctcacagctcaccttcctctcatgggctttccaccgcgttggggtacccctagtggcccgaggctctccctgagctcgaaccagggactctaggttccccggggcccagtgcaggggctgatgggaaggcactttcatccttggggtacccaggccccacctctccgcggcgcgggtttcttttttttctttttctgtgacaggtgcctcacctctcctccctcaaaactcacctttccctcacgggctttgtgtccccaaagccccccttggggtgcacttagcggccgaggcacagcctgagcacgaacgagggacactggggtccctgggtcccagtgcagggactgatgggaagacactttcgtctgtggggcacccaggccgtgcttctccgcggcgaagtttttctttttttctctgccccaggtgcctcaccttccccttaggggctttctgcccaccttggggtacccctactgtcccaaggcataccccagggtcaaaccagggacgccagggtccccagggcccagcgaaggggctgatgggatggcactttcatccgtgggggacccaggcactgcatctcggctgaacgtttatttttttctctgcctcaggtgcctcaccttcccctcatggaccttttgttcactttgtggtaccccaagctgtcccgaggcgcaccctggtctcgaaccagggtcgccagggtccaccaggcccagcatagggcctgatgagaaggcactttcatccgtgggggacccaggccccgcttctctgagacgcggtcctc---tttttctttttttttctgcccctggtgcctcacctctcctcccacaaacttcaacttccactcatgggccttctgtccaagttggggtacccctagtcgcctgaggcacaccctgggcgtgaaccagggatgccagggtccctggggcccagcgcaagggctgatgggaaaaaactttcgtccctggatgacccagacaccgcttcgcggcgcatttttttttcttctttgccccaggtgtctcaccttcccctcatgggccttctgcctctctgcgcctgcgccggcgctgcgggcctctctgcgcctgcgccggcgctgcgggcctctctgcgcctttcgccggcgctgtgggcctctctgcgcctgcgccggcgctgtgggcctctctgcg------------------------------cctgctccggcgctgtgcgcctttgcgagggcgga i panTro2.chr4_random C 0 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I e ponAbe2.chrUn 5905409 8927 + 72422247 I a score=567141.000000 s hg19.chrUn_gl000243 25873 2278 + 43341 gctgcgttcttcccagcacagacaaggagagcatcgccagggcggagctgagttctcctctgcacagacttcagagatacagcgaaggcggagcagtgttctcctcagcacagacccaggcgggccgggggcaccgcgagggcggagctgcgttctgctcagcacagacccgggggacaccgctaaggcagagcagcgttctcctcagcacagacctttggggcactgcctcgctttgggacaactcgggaccacatagacggtgaataaaatccttcccttttgcagccctgaataatcagggtcagagaccagttagaagggctcagtgtggaaaa-gggaaaccaaaagcccctctgaatcctgccaaccgaggttctccccagccaagccaaggcagccgcagtgcgagatccacaccgcagcctcggaagacaaatgcagcattcctaatgcagacatgacacccaaaatatgacacccccattgctcatgTAACAAGCACCTGTAATGCTAATGCACTGCCTCAATACAAAAATATTAATATAAGATCTGCAATCCCCTTGCTGCTATGCAGTCCTAAGACAGAGATCATAATAATCAACATTGACATAG----TACAAACGTAGTAAAGAACCtagggttaaggttggtgttagggttaggggttaggggttaagtttagggttaggggttggagataggggttggggtcagagttaggAGTTAAGAGACAACGTTTAGAGTTAGAGGTTAAGAGAggttaggggttagggataaggggttagggttggattagtgtgagggtgagggttgtggttaggggttaggcttagg-------ggttacggttaagggttagggttaggggttagggttagggtcaggggttagtggtcagggtcaggggttagggatcagggtcaggggttagggatcagggtcaggttcagggGtcccactctttgagttgtccatttactctgctgactgttccctttgccatgcaaaagctgtttagtttaattaagtcccagctatttatctttgtttttattgcatttgcatttgggttcttggtcttgaaatccttgcgtatgtcaatgtctagaagggtttatccagtgttatcttctagaatttttatagctcaggaatcagatttaagttcttaatccatcttgagtagatttttgtataagatgagagatgagaatccagttttattcccctacatgtggctcgccaattatcccaacatcatgtgttgaaaagggggtcctttccccactttatgtttttgtttactttgtcgaagatcagttggctgtaagtatttgggttaatttctgggttctctcttctgttccattggtctatgttcctatttttaaaccagtacgttggtgttttggtaacaataaggtaagccttattgtacagtttgaaatcaagtagtgtgatacctccag----gttctttttgcttaggcttggtttggttacatggctcttttttggttccatattaattttagaattgtttttgtaattctgtgaagaatgatggtggcattcagatggggattgcattgaatttgtagattgcctttaacagaatggtaattttcacaatattggttctacccatccatgagcatggggatgcgtttccatttgtttgtgtcatctatgacttcttttctttcttg--------ttttttttttttttttcagagggagtttcgctcttgtcgctgaggtgggagtgcaatggtgtgatctcggctcactacaacttctgcctcccgggttcaagcgattctcctgcctcagcttcccgagtagctcggattataggcgtgtgccaccgtgcttggctccatctatgatttctttcagtagtgttttgtaattttcattgtagctgtcctttgattcctttgctaggtatattcctaagttttgtttttttgttgttgttgtttgtcgcagctattgtaaaaggggttgagttcttgatgtgattctctgcttggtagctgttgatgtatggaagagctacggatttgtgtcccttaatcttgtatctggaaactttgctgaattcttttatcagttctaggaagtttctagaggagtccgtagggttttctaggcaaaagattatatcatcagcaacaagtgacagtttgacatcctctttaccgatttggatttcctctatttccttcttttgtctgattgctctggctaggacttccagtactatgttgaagaggagcggtgagagtagt s panTro2.chr4_random 1440091 2262 - 6711082 gctgcgttcttcccagcacagaccaggagagtatcgccagggcggagctgagttctcctctgcacagacttcagagatacagcgaaggtggagcagtgttctcctcagcacagacccaggccggccgggggcaccgcgagggcggagctgcgttctgctcagcacagacccgggggacaccgctaaggcagagcagcgttctcctcagcacagacctttggggcactgcctcgctttgggacaacttgggaccgcatagacggtgaataaaatccttcccttttgcagccctgaataatcagggtcagagaccagttagaagggctcagtgtggaaaa-gggaaaccaaaagcccctctgaatcttgccaaccgaggttctccccagccaagccgaggcggccgcagtgcgagatccacaccgcagcctcggaagacaaatgcagcattcctaatgcagacatgacacccaaaatatgacactcccattgctcatgTAACAAGCACCTGTAATGCTAATGCACTGCCTCAATACAAAAATATTAATATAAGATCCGCAATCCCCTTGCTGCCATGCAGTCCTAAGACAGAGATCATAATAATCAACATTGACATAG----TACAAACGTAGTAACGAGCCtaaggttaaggttggtgttagggttaggggttaggggttaagtttagggttaggggttggagataggggttggggtcagagttaAGAGTTAAGAGTCAACGTTTAGAGTTAGAGGTTAAGAGAggttaggggttagggataaggggttagggttggattagtgtgagggtgagggttgtggttaggggttaggcttagg-------ggttacggttaagggttagggttaggggttagggttagggtcaggggttaggggtcagggtcaggggttagggatcagggtcagggg-------tcagggtcaggttcaggggtcccactctttgagttgtccatttactctgctgactgttccctttgccatgcaaaagctgtttagtttaattaagtcccagctatttatctttgtttttattgcatttgcatttgggttcttggtcatgaaatccttgcgtacgtcaatgtctagaagggtttatccagtgttatcttctagaatttttatagttcaggaattagatttaagttcttaatccatcttgagtagatttttgtataagatgagagatgagaatccagttttattcccctacatgtggctcgccaattatcccaacatcatgtgttgaaaagggggtcctttccccactttatgtttttgtttactttgtcgaagatcagttggctgtaagtaattgggttaatttctgggttctctcttctgttccattagtctatgttcctatttttaaaccagtacattggtgttttggtaactat------ggccttattgtacagtttgaaatcaagtagtgtgatacctccag----gttctttttgcttaggcttggtttggttacatggctctcttttggttccatattaattttagaattgtttttgtaattctgtgaagaatgatggtggcattcagatggggattgcattgaatttgtagattgcctttaacagaatggtaattttcacaatattggttctacccatccatgagcatggggatgcatttccatttgtttgtgtcatctatgacttcttttctttctta-----------ttttttttttttccagagggagttttgctcttgtcgctgaggtgggagtgcaatggtgtgatctcggctcactacaacttctgcctcccgggttcaagcgattctcctgcctcagcttcccgagtagctcggattataggcatgtgccaccgtgcttggctccatctatgatttctttcagtagtgttttgtaattttcattgtagcggtcctttgattcctttgctaggtatattcctaagttttgtttttttgttgttgttgtttgtcgcagctattgtaaaaggggttgagttcttgatgtgattctctgcttggtagctgttgatgtatggaagagctactgatttgtgtccattaatcttgtatctggaaactttgctgaattcttttatcagttctaggaggtttctagaggagtccgtagggttttctaggcaaaagattatatcatcagcaacaagggacagtttgacttcctctttaccgatttggatttcctctatttccttcttttgtctgattgctctggctaggatttccagtactatgttgaagaggagtggtgagagtagg i panTro2.chr4_random C 0 I 21337 s ponAbe2.chrUn 5914336 2272 + 72422247 gctgcgttctccctcgcacagacccggagagcatcgcgagggcggagctgagttctcctctgcacaggcttcggagatacagcgaagacagatcagtgttctcctcagcatagaccagggcggaccgggggcaccgcgagggcggagctgcgttctgctcagcacagtcccgagggacaccatgaaggcagagcagctttctcctcagcacagaccttgggggcactgcctctctttgggacaactcggggccgcatcgacggtgaataaaatccttcctgtttgcagcccagtataatcagggtcagagaccagttagaagggttcagtgtggaaaacgggaaaccaaaaacccctctgaatcctgcccaccgaggttctccccagccaaggtgaggcggctgcagtgcgagatccacaccgccacctcggaagataaatgcagcattcctaatgcagacatgacacacaaaatatggcatccctattgctcatgTAACAAGCACCTGTAATGCTAATGTGCTGCCTCAATACAAAAATATTAATATAAGACCCGCAATCCCCTCGCTGCCCTGCAGTCAAAAGACAGCGATCATAATAATCAACATTGACATAGTCAATACAAACGTAGTAACGAACCtagggttaaggttggtgttagagttaggggttaggggttaagtttagggttaggggttggagataggggttgaggtcagagttaggggttaggagtcaacgtttagagttaggggttaagagaggttaggggttaggaattaggggttagggttgtgttagggtgagggtcagggttgtgtttaggggttagggtcagggttaagagataagggttaagggtttgggttaggggttagggttagggtcagggatt-------ggggtcaggggttagtggtcagggtcaggcg-------tcagggtcagggtcagggAtcccactctgtgggttgtctatttactctgctgactgttccttttgccatgcaaaagccctttagtttaattacttcccagctatttatctttttttttattgcatttgcatttgggttcttggtcatgaaatccttgcctatgccaatatctagaagggtttatccagtgttatattctagaatttttatggttcaggaataaggtttatgttcttaatccatcttgagtagatttttgtataaggtgagagatgagaatccagttttattcccctacatgtggcttgccaattatcccaacatcatgtattgaaaagagtgtcctttccccactttatgtttttgtttactttgtcgaagatcagttggctgtaagtatttgggttaatttctgggttctctcttctgttccattggtctatgtgcctatttttaaaccagtaccatgctgttttggtaactat------ggctttattgtacagtttgaaatcaagtagtgtgatgcctccaggtttgttctttttgcttagccttggtttggctacagggctctcttttggttccatattaattttagaattgtttttgtaattctgtgaagaatgacggtggtattcagatggggattgcattgaatttgtagattgcatttaacagaatggcaattttcacaatattggttgtacccatccatgagcatggggatgcgtttccatttgtttgtgtcatctatgatttcttttctttcttgtttttttttttttttttttttttttagagggagtttcactcttgtcgctgaggtgggagtgcaatggtgtgatctcagctcactacaacttctgcctcccaggttcaagcgtttctcctgtttcagcttcccaagtagctgggattataggcatgtgccactgtgctcgactccatctatca----tttcagcagtgttttgaaatttttattgtagaggtcttttgattcctttgctaggtatattcctac-ttttgtttgtttgt-----ttgttttttgcagctattgtaaaagaggttgagtttttgatgtgattctctgcttggtagctgttgatgtatagaagagctattgatttgtgtccattaatcttgtatctgtaaactttgctgaattcttttatcagttctaggagctttctagaggagtccatagggttttcaaggcgaaatatcatatcgtcagcaaccaatgacagtttgacttcctctttacagatttggatttcctctatttccttcttttgtctgattgctctggctaggacttccagtactatgttgaagaggagtcgtgagagtagg i ponAbe2.chrUn I 8927 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=344068.000000 s hg19.chrUn_gl000243 28151 1382 + 43341 ctccttgtcttgttccagttctcaaagtgaatgctttcaccgtttccccattcagtattatgttggttgtgggtttgtcatagatggcttttattacattaaggtatgtcccttgtatgcctattttgctgagagctttaatcataaagcaatgctagattttgtcaaatgttttttctgtacctgttgatataatcatattagatttttttaa-ttctgtttatttagtgtatcacacttattgacttgcatatgtgaaactactcctatatcattggtataaaacccacttgatcatggtggattat-tttttgatatgttgtcggattcagttagatagtattttcttaaggattttggcatctgagttcatcaaggatattggtctgtagttttcttttttggttatgtccttccatggttttggtattagggtgat----gctggcttcatagaatgaataagg-agggtttcttctttctctgtcttgtggaatagtatgaaaagatgggtatcatttcttccttgaatgaaagaagacattctttgaatgtctggtagaattctgctgtgaatctgtctggccctcagcttttttt-gctggtaattttaaaattaccatttcaatcttgctgcttgctttattggtctgcttggggtatctaattcttcctgatttaagctaggggagttgtatttttccaggaatttatccaactcttctaggttttgtagtttatgtgccaaaaggtgttcatagtacccttgaataatctttaatatttcagtggtgtcagttgtaatatcccctgtttcatttcttagtgaggttatttggattttctctcttcttttcttggttaatcttgctaatggtctatcaattttatttatcttttcaaataaccaactttttgttttatttatgttttgtatttgttgttgttgttgttgtgtcaatttcatttagttctgctctgatttttgttatttcctgtgtttgctgggattgggtttggcttgttcctgcttctctagttccctgagatgtgaacttagattgtctgtttgtgctctttcagactttttgatgtaggtttttaggactacaaactttgctcttagcagtgcctttgctgtatcccagaggtcttgataggttgtgtcatccagttcgaagacatt-------ttttacatttccatcttgatttcatttttcacccaatgctcattctgtgaggaacaaccaaattgttttccgcagcaagggcatcattttctattcctagcagccacatcatgagggctccaacttctccacctccttagcaacatttattttctgtgtcattgttatgaaagccttacttgtggatgcagagtggcatG s panTro2.chr4_random 1463690 1385 - 6711082 ctcctcgtcttgttccagttctcaaagggaatgctttcaccgtttccccattcagtattatgttggctgtgggtttgtcatagatggcttttattacattaagatatgtcccttgtatgcctattttgctgagagctttaatcataaagcaatgctagattttgtcaaatgttttttctgcacctgttgatataatcatattagatttttttaaattctgtttatttggtgtatcacacttattgacttgcatctgtgaaaccactcctatatcattggtataaaacccacttgatcatggtggattat-tttttgatatgttgtcggattcagttagatagtattttgttaaggattttggcatctgcgttcatcaaggatattggtctgtagttttcttttttggttatgtccttccatggttttggtattagggtgat----gctggcttcatagaatgaataagggagggtttcttctttctctgtcttgtggaatagtatgaaaagattggtatcatctcttccttgaatgaaagaagacattctttgaatgtctggtagaattctgctgtgaatctgtctggccctccgcttttttttgctggtaattttaaaattaccatttcaatcttgctgcttgctttattggtctgcttggggtatctaattcttcctgatttaagctaggagagttgtatttttccaggaatttatccaactcttctatgttttgtagtttatgtgccaaaaggagttcatagtacccttgaataatctttaatatttcagtggtgtcagttgtaatatcccctgtttcatttcttagtgaggttatttggattttctctcttctttccttggttaatcttgctaatggtctatcaattttatttatcttttcaaatagccaactttttgttttatttatgttttgtatttgttgttgttgttgttgtgtcaatttcatttagttctgctctgatctttgttatttcctgtgtttgctgggattgggtttggcttgttcctgcttctctagttccctgagatgtgaacttagattgtctgtttgtgctctttcagactttttgatgtaggtttttaggactacaaactttgctcttagcagtgcctttgctgtatcccagaggtcttgataggttgtgtcatccagttcgaagaaatt-------ttttacatttccatcttgatttcatttttcacccaatgctcattctgtgaggaacaaccaaattgttttccgcagcaagggcatcattttctattcctagcggccagatcatgagggctccaacttctccacctccttagcaacatttattttctgtgtcattgttatgaaagccttacttgtggatgcagagtggcatg i panTro2.chr4_random I 21337 C 0 s ponAbe2.chrUn 5916608 1384 + 72422247 ctcctcgtctagttccagttctcaaagggaatgctttcaccttttccccattcagtattatgttggctgtgggtttgtcatagatggcttttattaacttaaggtatgtcccttgtatgcctattttgcagagagctttaatcataaaacaatgctagattttgtcgaatgctttttctgcatctgttgatacaatcatgtagtttttcttttaattctgtttatttggagtatcacatttattgacttgcatatgttaaaccatttctgtatcacttgtatgaaatccacttgatcatggtggattatctttttgatatgttgttggattcagttagatagcattttgttaaggattttggcatctgtgttcatcaagggtattggtttgtagttttctttcttggttatgtcctttcatggttttggtattagggtgattctggctggcttcatagaatgaatcagggagggtttcttctttctctgtcttgtggaatagtgtgaaaagattggtatcatttcttctttgaatgaaagaagacattctttgaatgtctggtagaattctgatgtgaatctctctggtcctcggctttttag-gttggtaattttaaaattaccatttcaatcttgctgcttgctttattggtcagcttggggtatcttattcttcctgatttaagctaggagggttgtatttttccaggaatttatccaaatcttctaggttttctagtttatgtgccaaaaggtgttcatagtacccttgaataatctttaatatttcagtggtgtcatttgtaatatcccctgtttcatttcttagtgaggttacttggatttcctctctccttttcttggttaatcttgctaatggtttatcaattttacttatcttttcaaataactaactttttgttttatt--tgttttgtattttttgttgttgttgttgtgtcaatttcatttagttctgctctgatcttggttatttcctctgtttgctgggattgggtttgacttgtacctgcttctctcgttccctgagatgtgaacttagattgtctgtttgtgctctttcagactttttgacataggtgtttagggctagaaattgtcctcttagcactgcctttgctgtatcccagaggtctttatatgttgtgtcatccagttcgaagaaattttttacattttacatttccatctttatttcgcttttcacccaatgctcattcTGtgaggaaccaccaaattgttttccacatcaagtgcatcattttctattcctagcagccagttcatgagggctccaatttctccacctccttagcaacattgattttctgtgtcgttgtaatgaaagcattactagtggatgca---------- i ponAbe2.chrUn C 0 I 2911 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=197615.000000 s hg19.chrUn_gl000243 29533 809 + 43341 AATGAAGTCAATTAACACGTTTATTACCTCACAGAATAGTCACCTTTTGG-GTGCATGGGTGGGATAAGAAAACTTAACTCCATCCCCTGTGACGGAATAGTGGCCATTCCAGCTGCTCCAGGCTCCAGCAGAGGAAGACCGGGGTATGTGGCCCCACCAGGGTGACCCTCAGGCCTGGCGCGCACGCATTCCAGAGGCCACCCAAACCATGCTCTGCCATCTGGGCGCCCAAGCTGCCGTCGCCCCCTGTGTGCAGGCAGCATCTGCCTGGCAACCCCCGAGCCCGCTCGCGCTCCTAGCATCACAGAAGCAGGGCCACGTGTCCCAGTGGCTGCAGCCAAGCCAGGCATTCTGCCCTGCGGCAGCAGCTGCACAGGAGCGAGAACTGAGAACCCACCGCTCAACCCCACACGAGGTGACTGCCGAGTGCCCATATAAACGGCTCCGATCTCCCTCAGGTGGAGGAGTGGTCGGGAGGCATGGCCTGGGGGCCCTCAGGCTTGGCGCGCTGGCGATCCCAAGGCCGACCAGGCCATGCACCTCCAGCCTGCCTGGGCACCCGAGCTGCAGCCGCCTTCTGCATGCAGGCAGCAGCCTCCAGGCAACTCCCGAGCCCGCCCACACTCCCCACATCTTGGAAGCAGGGCCAAATGTCCCTGTGGCTGTGGCCAAGCCAGGCGGTCTGTACTGCAGCAGCTGCACAGGGGCGGGAACCGACCCTCAGCCCCATCCCCGGTGGCTGCAGAGGGCCCCTGGATAGAGATCTGGAGCTCTGACAGAGGAGGAGCCGGGCCAGGGCAGGGTCTGGC s panTro2.chr4_random 1465075 810 - 6711082 aatgaagtcaattaacacgtttattacctcacagaatagtcacctttttgtgTGCATGGGTGGGATAAGAAAACTTAACTCTATCCCCTGTGACGGAATAGTGGCCATTCCAGCTGCTCCAGGCTCCAGCAGAGGAAGACCGGGGTATGTGGCCCCACCAGGGTGACCCTCAGGCCTGGCGCGCACGCATTCCAGAGGCCACCCAAACCATGCTCCGCCATCTGGGCGCCCAAGCTGCCATCGCCCTCTGTGTGCAGGCAGCAGCTGCCTGGCAACCCCCGAGCCCGCTCGCGCTCCTAGCATCACAGAAGCAGGGCCACGTGTCCCAGTGGCTGCAGCCAAGCCAGGCATTCTGCCCTGCGGCAGCAGGTGCACAGGAGCGAGAACTGAGAATCCACCGCTCAACCCCACACGAGGTGACTGCCGAGTGCCCATACAAATGGCTCCGATCTGCCTCAGGTGGAGGAGTGGTCGGGAGGCACGGCCTGGGGGCCCTCAGGCTGGGCGCGCTGGCGATCCCAAGGCCGACCAGGCCATGCACCTCCAGCCCGCCTGGGCACCCCAGCTGCAGCCGCCTTCTGCGTGCAGGCAGCAGCCTCCAGGCAACTCCCGAGCCCGCCCACACTCCCCACATCTCGGAAGCAGGGCCAAATGTCCCTGTGGCTGTGGCCAAGCCAGGCGGTCTGTCCTGCAGCAGCTGCACAGGGGCGGGAACCGGCCCTCAGCCCCATCCCCGGTGGCTGCAGAGGGCCCCTGGATAGAGATCTGGAGCTCTGACAGAGGAGGAGCCGGGCCGGGGCAGGGTCTGGC i panTro2.chr4_random C 0 C 0 s ponAbe2.chrUn 5920903 807 + 72422247 aatggagtcagtgaacatgttaattacctcacagaatagttacctttctgtgtgcatgtgtgagataagaaaacttaactctatcccctGTGACTGCAGAGTGGCCATTCCAGCTGCTCCAGGCTCCAGCAGAGGAAGACCGGGGCAGGTGGCACCACCAGGGGGGCCCTCAAGCCTGGCGCACACGCATTGCAGGGTCCACCAAGACCATGCTCCGCTGCCTGGCTACCCAAGCTGCAGTCGCCCTCTGTGTGCAGGCAGCAGCTGCCTGGCAACCCCCGAGCACGCTCGCGCTCAAAGTCTCTCAGAACCAGGGCCTGGTGTCCCAGTGGCTGCGGCCAAGCCAGGCATTCTGCCCGGCGGCAGC---TGCACAGGACGGAGAACTGAGAACCCGCGGCTCAACCCCACACAGGGTGACTGCCCAGTGCCCATGGCAGCGATCCCGATCTCCCTCAGGTGGAGGAATGGTTGGGAGGCACGGCCTGGGGGCCCTCAGGCTGGGCACGCTGGTGATCCTGAGGCCGACCAGACCATGCACCTCTAGCCCGCCTGGGCACCCAAGATGCAGTCGCCTTCTGTGTGCAGGCAGCAGCCTCCAGGCAACTCCTGAGCCCGCTTGCTCTCCCCATATCTCGGAAGCAGGGCCAGATGTCCCTGTGGCTGCGGCCAAGCCAGGCGGTCTGCCCTGCAGCAGCTGCACGGGGTCAGGAAGCGGCCCTCAGCCCCATCTCCGGTGGCTGCAGAGGGCCCCTGGCTAGAGGTCTCGAGCTCTGGCAGAGGAGGGGCCGGGCGGGGGTAGGGTCCGGc i ponAbe2.chrUn I 2911 N 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=28794.000000 s hg19.chrUn_gl000243 30342 313 + 43341 AGGCTCTCAGGCCAGGGGCACCCGCGATCCAGAGGCCGCCCAGGGCATGCTTCACCACCTGGGAGCCCAGCTACAGGCGCCGGGCGACTCCCAAGCTGGCTGGCGCGCCCAGCCTCGCAGAACCGGAGCTAGATGTCGCCATGGCTGCGACCAAGCCAGGCGGTCTGCCCAGGGGCGGCTGCACCGGGGCAGGAACCGACCCTCAGCCCCATCCCCGGTGGCTGCAGACGGCCCCTGGGGCGGCCCCGATCTCTCTTCGGAGGAGGAGAGGGGCGGGAGTCACGGCCAGGCGGACCCTCAGGCGGGAAGGAGT s panTro2.chr4_random 1465885 313 - 6711082 AGGCTCTCAGGCCAGGGGCACCCGCGATCCAGAGGCCGCCCGGGGCATGCTCCACCACCTGGGCGCCCAGCTACAGGCGCCGGGCGACTCCCAAGCTGGCTGGCGCGCCCAGCCGCGCAGAACCGGGGCTAGATGTCGCCGTGGCTGCGACCAAGCCAGGCGGTCTGCCCAGGGGCGGCTGCACCGGGGCAGGAATGGACCCTCAGCCCCATCCCCGGTGGCTGCAGACGGCCCCTGGGGCGGCCCCGATCTCTCTTCGGAGGAGGAGAGGGGCGGGAGTCACCGCCAGGCGGGCCCTCAGGCGGGAAGGAAT i panTro2.chr4_random C 0 C 0 e ornAna1.Ultra269 766763 2355 - 1628958 I a score=3984.000000 s hg19.chrUn_gl000243 30655 36 + 43341 GCGCGCCTGTGATTCCGGGACGTCCCGCGCCAGCCC s panTro2.chr4_random 1466198 36 - 6711082 GCACGCCTGCGATTCCGGGACGTCCCGCGACAGCCC i panTro2.chr4_random C 0 C 0 s ornAna1.Ultra269 769118 35 - 1628958 -GAGGTCGAGGGGTCCGGGCCTGCCTGCTCCCACCC i ornAna1.Ultra269 I 2355 N 0 a score=221911.000000 s hg19.chrUn_gl000243 30691 2447 + 43341 AGGAGAACCCGCAAGCCAGCGGCGCCTGTttctctgtgtgattctttgaggaaccaccaaactgttttccacagcaagtgcatcattttctattcctagcagccagttcatgagggctccagtttctccacctccttagcaacattgattttctgtgtcgttgttatgaaagccttactagtggatgcaaagtggcatctcatttgggttttgccttgcattttattaatgaataatggtgtttagcatcttttcttttccttcttagacatttgtgtatcttctttggagaaatgtctgttcaagtcctttgcctattttttaattgggatcttagaaattctgttgttgagttgtggaatattaagcttttatcagatacacattttgattttatcagatacatattttctcacatattatgggttgtcttttcacttccttgatagtatcctttgatacataaagggttttttattttgattaaatctaattttcgtgtattttcttttgttatctgtgcttttctgtcatatttcaaaatacacttaaaactcaaaggtcataaaggtttaccgtgtgttttcttctaagagttacatatttttagtccttacatttaagtattttattaatttagaattaatttttgtatatactgcaaagtaggggtctaacttctctcttgtgcactgacatccagttgttgaagagactgttctttcctcccttgactagacttggccaccttgttgaacagtcattgaccatatatgtgaggactaacttgtaggatctcaaatctgttccattgtattggtctgaaagtctattggtcttattccagtaccacactctcttgattactgtagatttgtagtaggctgtgaaactgaaaaatgtgagttttccaatgttgtttttcaagactgttttgtctgtcagatcctttgaatttttgtatgattttagaatgagtttctttgtttctgcaaaaatgcctttgggattttgatggtattgcattgaatctgtagattactttagatggtattgtcatcttaacaatattgtcttacaacccgtgaacacagaatgtctttccacttatttccactctctttag-ttttttgcagcaatgttttatgtataccaccatggttagatttatgcctgaataacgtattatttgatgtcattataaatggaatttttaaaatgttttcatagttctttacaactatatagaaatatagctcatttgcctatgtttgtttgcatcctgcctcttttattagttataatcggttttgtgttttgtttggagctttatacccataagatcatgtgtagatataattttacacctattttttatttctaatttagatgccttttatttctttgtcttgcctaattgctctggctagaactgccagtgctacgttgaatacaagtggcaaatgcaccatccttttcttctagatgttaggaaaacagctttcagtgtttcatcattgatcatgatattaactgttgggtttttgtacatcccattgtcatgttgcagaagatcccttctatgcctagtttattgagtatttttattatagaagggtgttgtatttcatcaatgttttctctgcagcaattgaaataatcacgtgcttattcattttactgttacagcatattacactgattga-ttttttatatgttgaaccacccttgcattttggggataaatctcaaagggtgatagtttacaatcctttgattatacagtattgctgctgctagtattttgctagtatttctagtattttgctgagatttttgcttatatattcataagggatatagtgctgtatttctctcttttgtgctctctttgtctttggtataaggataatgctgttatcaaaaaatgaattagcaagtattccttcttcatatattttgtcagaagagtttgagaagaaatggtattaattcttctttaaatgttaggttgactcaccagttaatgcagctatttggtcataaatgtttctttgttaatcgctttcgattactaattcaatctcctaggttataggtctattcagattttctctttcttcttgagccactttggtagtttgtgtctttctagcgattcatccatttcatccagggcacctaatttgttgctagacagttgttcacagtatactcctgtaatccttttgtatttctgtaaagttggtagtaatggctctgctttcatttatcattttaataattagtcttccatcttttgctcagtcaatatagtgaaaggcttgatctttcaaagaatctacattttttcattctactgctctccaaccttctgttttattgatttatgctctaattatgctctttattatttctttccttctgctagctttggatttagtctT s panTro2.chr4_random 1466234 2445 - 6711082 AGGAGAACCCGCAAGCCAGCGGCGCCTGTttctctgtgtgattctttgaggaaccaccaaactgttttccacagcaagtgcatcattttctcttcctagcagccagttcatgagggctccggtttctccacctccttagcaata-tgattttctgtgtcgttgttatgaaagccttactagtggatgcaaagtggcatctcatttgggttttgccttgcattttattaatgaataatggtgtttagcatcttttcttttccttcttagacatttgtgtatcttctttggagaaatgtctgttcaagtcctttgcctgttttttaattgggatcttagaaattctgttgttgagttgagggatattaagcttttatcagatacacattttgattttatcagatacatattttctcacatattatgggttgtcttttcactcccttgatagtatcctttgatgcataaagggttttttattttgattaaatctaattttcgtgtattttcttttgttatctgtgcttttcggtcatatttcaaaatacacttaaaactcaaaggtcataaaggtttaccgtgtgttttcttctaagaattacatatttttagtccttacatttaagtcttttattaatttagaattaatttttgtatatactgcaaggtaggggtctaacttctctcttgtgcactgacatccagctgttgaagagactgttctttcctctcttgactagacttggccaccttgttgaacagtcattgaccatatatgtgcggactaacttgtaggatctcaaatctgttctattgtattggtctgaaagtctattggtcttattccagtaccacactctcttgattactgtagatttgtagtaggctgtgaaactgaaaaacgtgagttttccagtgttctttttcaagactgttttgtctgtcagatcctttgaatttttgtatgattttagaatgagtttctttgtttctgcaaaaatgcctttgggattttgatggtattgcattgaatctgtagattactttagatggtattgtcatcttaacaatattgtcttacaacccgtgaacacagaatgtctttccacttatttccactctctttagtttttttgcagcaatgttttgtgtataccaccatggttagatttatgcctgaataacgtattctttgatgtcattataaatggaattttaaaaatgttttcatagttctttacaactatatagaaatatagctcatttgcctatgtttgtttgcatcctgcctcttttattagttataatcggttttgtgttttgtttggagctttatacccataagatcatgtgtagatacaattttacacctattttttatttctaatttagatgccttttatttctttgtcttgcctaattgctctggctagaactgccagtgctacgttgaatacaagtggcaaatgcaccatccttttcttctagatgttaggaaaacagctttcagtgtttcatcattgatcatgatattaactgttgggtttttgtacatcccattgtcatgttgcagaagatctcttctatgcctagtttattgagtatttttattatagaagggtgttgtatttcatcaatgttttctctgcatcaattgaaataatcacgtgcttattcattttactgttacagcatattacactgactgatttttttatatgttgaaccacccttgcattttggggataaatctcaaagggtgatagtttacaatcgtttgattatacagtat---tgctgctagtattttgctagtattgctagtattttgctgagatttttgcttatatattcataagggatatagtgctgtatttctctcttttgtgctctcttcgtctttggtataaggataatgctgttatcaaaaaatgaattagcaagtattccttcttcatatattttgtcagaagagtttgagaagaaatggtattaattcttctttaaatgttcggttgactcaccagttaatgcagctatttggtcataaatctttctttgttaatcgctttcgattagtaattcaatctcctaggttataggtctattcagattttctgtttcttcttgagccactttggtagtttgtgtctttctagcgattcatccatttcatccagggcacctaatttgttgctagacagttgttcacagtatactcctgtaatccttttgtatttctgtaaagttggtagtaatggctctgctttcatttattattttaataattagtcttccatcttttgctcagtcaatatagtgaaagccttgatctttcaaagaatctacattttttcattctactgctctccaaccttctattttattgatttatgctctaattatgctctttattatttctttccttctgctagctttggatttagtctT i panTro2.chr4_random C 0 C 0 a score=357216.000000 s hg19.chrUn_gl000243 33138 1416 + 43341 CCACCTGGATTTATTTTGAGAGTGATATTGATGTAACTTCATGGAAATAATACTAGATAGAAAGTTAGCGGATAGATTCTCTATCTGATGAGAGTTTGGTGCAAGTCGAGTACCAGGTTACCAAGTTTTATTTTTTTCTCTGAC-CCAAAAAACAATTTGGCAGCCGGTGAGAAACTCTCACAGCTCTGGATGTGAGTTTAGGACACTGCATTTCTAGCATTCAATTTCTTACTACTTTTTTGCACAGGGATCATGGCACAAGTTGCAGTTTCCACCCTGCCCATGGAAGATGAGGAGTCCATG---------------------------------GAAGATGAGGAGTCTGTTGAAGATGATTCCGTGGAGAGCAGGATGGTGGTGACATTTCTCATATCAGCTCTCGAGTCCACGGTGAGACCTTCTGTTCTAACATGATATAATTTGGTAGAACTGGGTGGTAGATAAGGTTGATTTTTTTTTTGTAGAACTTATAATTTTATGATTTGTAGTTCTAATGAGTAGATCTTTTTCTGGAATAGTAGTTATGTTCAAACACTTCTAACCAAATGTGccatgttgtccagtctggtctcaaaatatggggctcaagagacctgcccaccttggcctcccaaaatactgggattacaggtgtaagcccctgaatctggccAGATATTtttctttttatggctgaataatactctgtgtatgtatatattacattttctttatctattcacctactgatgggcattaggtttgg-gctaccttctggccactgtgaataatgctgctgttaattgggtgtacaaatacctgtttgagtccctgctctcagttcttttgggtatatacgcttaaagggtgttgatggatcatataattctatgcttcatatttttaaggagctgctaaaccattttccacagtgggctgtaccattttacattccaaaaagcaatgcatacagcttccaatttctctatagcattgctgacagttaatattttctgtttATGTATTGTATTTTTATAGTGTTTGAAATTAATCTGAGGCTTTTCACTGATACCAAAATATTAGGAAAGGTTTTCCAAAAATAATACTGCTTATTATAGAGGATTTTACGTGTTACTTGATGCCCTGTGATCTGTTTTCTAAGTAAGAAGAGGAACTTCTTggctgggcacagcggctcatgcctgtaatcctagcacttttggagaccgaggtgagtagatcacctaatgtcaggagttcaagaccagcctggccaacatagtgaaacccagtctccactaaaaaaaaa---------aaaattagctgggtgtggtggggggtgcctctaatcccaggtattcggaaggctgaggcagagaattgattaaacccataaggcagaggttacagtgaccgagattgcaccactgcaccccagcctgtgtgaca s ponAbe2.chr2a 109886708 1454 - 113028656 CCACGTGGATTTATTTTGGGAGTGATATTGATCTAACTTCATGAAAATAATACTAGATAGAAAGTTAGTGGATGGATTCTCTAT-TGATGAGAGTTTTGGGCAAACCAAATACCAGGTTACCAAGTTTTATTTTTGTCTCTGATGCAAAAAAACAATTTGCCAGCCGGTGAAAAACTCTGACAGCTCTGGATGTGAGTTTAGGACACTGGATTTCTACTATTCAGTTTCTTACTACTTTTTTGCACAGGGATCATGGCACAAGTTGCAGTTTCCACCCTGCCCACTGAAGATGAGGAGTCCATGGAAGATGAGTCTGTCTAAGACGAGGAGTCCGTTGAAGATGAGGAGTCTGTTGAAGATGAGTCCGCAGAGAGCAGGATGGTGGTGACATTGCTCATATCAGCTCTCGAGTCCACGGTGAGACCTTCTGTTCTAACATTCTATAATTGGGTAGGACTGGGTGGTAGATAAGGTTGA-TTTGTTTTTGTAGAGCTTATAATTTTATGATTTATAGTTCTAATGAGTAGATCTTTTTCTTGAATAGTAGTTGTGGTCAAACACTTCTAACCAAATGTGccatgttgtccagcctggtctcaaaatttggggctcaagagacctgcccaccttggcctcccaaaatactgggattacaggtgtaagccCCTAAATCTGGCCAGATATTtttctttttatggctgaataatactc--tatctgtatatattactttttctttatccattcacctactgatgggcattagagttggttctaccttttggccactgtgaataatgctgctgttaaatgggtgtacaaatacttgtttgagtccctgctctcagttcttttgggtatatatgcttaaagggtgttggtggatcatataattctgtggttaatatttttaaggagctgctaaaccattttccacagtgggctgtaccattttacattccaaaaagcaatgcatatagcttccaatttctctatagcatcgctgacaggtaatattttctgtttATGTATTGTATTTTTATAGTGTTTGAAATTAATCTGAGGGTTTTTGCTGATACCAAAATATTAGGAAAGGTTTTCCAAAAATAATACTGCTTATTATAAAGAATTTTACTTGTTACTTGATGCTCTGTGATCTATTTTCTCAGTAAGAAGAGGAACTTCTCagctgggcgcagcggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcac--aaggtcaggagttcaagaccagcctggccaagatagtgaaacccagtctctactaaaaaaaaaaaaaaaaaaaaaattaactgggtgtggtggcgggcgcctctaatcccaggtattcagaaggctgaggcagagaattggttgaacccgggagacagaggttgcagtgactgagatcgagccactgcaccccagcctgtgtgaca i ponAbe2.chr2a N 0 M 324 s panTro2.chr4_random 1468679 1441 - 6711082 CCACCTGGATTTATTTTGGGAGTGATATTGATGTAACTTCATGGAAATAATACTAGATAGAAAGTTAGAGGATAGATTCTCTATCTGATGAGAGTTTGGGGCAAGTCGAGTACCAGGTTACCAAGTTTTATTTTTTTCTCTGAC-CCAAAAAACAATTTGGCAGCCGGTGAGAAACTCTCACAGCTCTGGATGTGAGTTTAGGATACTGCATTTCTACCATTCAATTTCTTACTACTTTTTTGCACAGGGATCATGGCACAAATTGCAGTTTCCACCCTGCCCATGGAAGATGAGGAGTCCATGGAAGAT---------------GAGGAGTCCATTGAAGATGAGGAGTCTGTTGAAGATGATTCCGTGGAGAGCAGGATGGTGGTGACATTTCTCATATCAGCTCTCGAGTCCATGGTGAGACCTTCTGTTCTAACATGATATAATTGGGTAGAACTGGGTGGTAGATAAGGTTGA-TTTGTTTTTGTAGAACTTATAATTTTATGATTTGTAGTTCTAATGAGTAGATCTTTTTCTGGAATAGTAGTTATGGTCAAACACTTCTAACCAAATGTGccatgttgtccagtctggtctcaaaatatggggctcaagagacctgcccaccttggcctcccaaaatactgggattacaggtgtaagcccctgaatctggcCAGATATTtttctttttatggctgaataatactctgtgtatgtatatattacattttctttatctattcacctactgatgggcattaggtttgg-gctaccttttggccactgtgaataatgctgctgttaatcgggtgtacaaatacctgtttgagtccctgctctcagttcttttggttatatacgcttaaagggtgttgatggatcatataattctatgcttcatatttttaaggagctgctaaaccattttccacagtgggctgtaccattttacgttccaaaaagcaatgcatacagcttccaatttctctatagcactgctgacagttaatattttctgtttATGTATTGTATTTTTATAGTGTTTGAAATTAATCTGACGCTTTTTGCTGATACCAAAATATTAGGAAAGGTTTTCCAAAAATAATACTGCTTATTATAAAGGATTTTACGTGTTACTTGATGCCCTGTGATCTGTTTTCTAAGTAAGAAGAGGAAATTCTTggctgggcacagcggctcatgcctgtaatcctagcacttttggaggccgaggtgggtagatcacctaagatcaggagttcaagaccagcctggccaacatagtgaaacccagtctccactaaaaaaaaa-aaaaaaacaaaattagctcggtgtggtggggggtgcctctaatcccaggtattcggaaggctgaggcagaaaattgattaaacccataaggcagaggttacaatgaccgagattgcaccactgcaccccagcctgtgtgaca i panTro2.chr4_random C 0 C 0 a score=17308.000000 s hg19.chrUn_gl000243 34554 194 + 43341 gagtgagagtccatctc---aaaaaaaaaaggaaagaaagaagaagaaCTTCTCTCCATCCAGCCTCATTCCACTACACCAACTCTTCTGTGTCTGGTTGTGCAGGGGAGAAAGGGAGCTTGGCAACTCTTTGCTGTGTTGAGTTGTGGTAGCCCATCACTGGGTTGTAAAGTGCCTTGCCTCCTTTCCTCCCCTCC s panTro2.chr4_random 1470120 197 - 6711082 gagcgagagtccatctcaaaaaaaaaaaaaggaaagaaagaaGAGGAACTTCTCTCCATCCAGCCTCATTCCACTGCACCAACTCTTCTGTGTCGGGTTGTGCAGGGGAGAAAAGGAGCTTGGCAACTCTTTGCTGTGTTGAGTTGTGGTAGCCCATCACTGGGTTGTAAAGTGCCTTGCCTCCTTTCCTCCCCTCC i panTro2.chr4_random C 0 C 0 e ponAbe2.chr2a 109888162 324 - 113028656 M a score=75534.000000 s hg19.chrUn_gl000243 34748 292 + 43341 ttttttttgagacagagtctcactctgtcgtccaggctgaggtgcagtggtgggatctctgctcactgcaaccttagcctcctgggttcaagtgattctcctgcctcagcctcccaagaagctgggactacaggcacatgccaccacacctggc-taactttttttatttttagtagagacagggtatcaccatgttggccaggctggtcttgaactcttgacttcaggtgatccacccaccttggcctcccaaagtgctggggttaaaggcatgagacactgcacccATCCA s ponAbe2.chr2a 109888487 293 - 113028656 tttttattgagacagagtctcactctgtcgcccaggctcgggtgcagtggtgcgatctctgctcactgcaacctcagcctcctgggttcaagcgattctcttgcctcagcctcccaagatgctgggactacaggcacgtgccaccacacctgacttttttttttttatttttagtagagacagggtatcactatgttggccaggctggtcttgaactcctgacctcaggtgatccgcccaccttggcctcccaaagtgctggggttacaggcatgagacactgcgccTATCCG i ponAbe2.chr2a M 324 C 0 s panTro2.chr4_random 1470317 292 - 6711082 ttttttgtgagacagagtctcactctgtcgtccaggctgaggtgcagtggtgcgatctctgctcactgcaacctcagcctcctgggttcaagtgattctcctgcctcagcctcccaagaagctgggactacaggcacatgccaccacacctggc-taactttttttatttttagtagagacagggtatcaccatgttggccaggctggtcttgaactcctgacttcaggtgatccacccaccttggcctcccaaagtgctggggttaaaggcatgagacactgcgcccgtccA i panTro2.chr4_random C 0 C 0 a score=987621.000000 s hg19.chrUn_gl000243 35040 2229 + 43341 CCTCCTCTTTTACTTGGGAGAAATGCACAGATTCTGGGTGCCATGTGCATTTGTTTTGGGAGTGATAATTGATCTAAC-TTATGGAAATAATACTAGAT----AGTTAGCGGATGGATTCTGTATCTGATGAGAGTTTTGGGCAAAATGAATTCCTAGTTTCTGAGTCTTA-TTTTTCCCCTGATTCAAGATAACTGTGAATTATCCAGCCAGTAAAAAACTCTCACAGCTCTGGATGTGAGTTTAGGACACTGGATTTCTACCACTCATTTTCTTACTACTTTTCTTGTGCAAGGATCATGGCACAAGTTGCAGTTTCCATCCTGCCCATTGAAGATGAGGAGTCTGTTGAAGATGAGGAGTCCTTGGAGAGCAGGATGGTGGTGACATTCC---TGTCAGTTCTCGACTCCATGGTCAGACCTTCTGTTCTCACATTCTGTAGTTCGGTAGGACTGGGCGGTAGATAAGGTTGATTTGT-TTTTGTAGAACTTACAATTTTGTGATTTTTAGTTCTAATGAGTAGAACTTTTTCATGAATAGTAGTTACGGTCAaacacctctgaccaaatgtgcatgtggagtttctacactgattttcaaacaatctggatcccaactgggtatcccacaattccatcctgacactccctggagttagtgcagaccctgcaggatgggagctcagtcccaggagtctaccctcactccacataccaattgcaagtcttgggttgttacatgtagttttgaccaaccagttagaaaacagggt-ttcatgacccccattggtgggtggaatcatttgctcggacagcttgcagaactcagaaaaacagattgttttctttt-ttttctgagatacagggtctcagtctgttgccaggctggaatgcagtggtgtgatcaaagctcactgtagcatgggactcctgggctcaagtgatccttccacctcagcctcccaaatag------ctgagattataggcctgtaccagcatatctggctatgttctttta-ctttttgtagagatggggtcttgttatgttgcccaggctggtctcaaatttctgggctcacgtgatcctcccacctcaacttcacaaaatgctgggattatgggcatgaaccactgcatctcaccaatttactttcttttactggttcattttaaaggctaaatctcagaaacagccagtgaaagagatgtacatgctgggcacagtggctcatgcctgtaatttcagcac-tttgggagactgaggcgggagcatcacttaagtgctcaggagattaagaccagcctgggtaacaaggtgaaaatgcatctctacaaaaagatttttctaaaaattagccaggcacagttatctatagttctagctactcagtgcctataattctagctactcaggaggctgaggtgagaggatgagaggatggggcttgagatagggaggcatagttcgcagtgagccatgattgtgccatgacactctaggctgggagatagagccagactctgtctcaaaaaaaaaaca--------------------aaaagcacacagggcaaggtatgtcgagaggggtacagaacttccatgtcctctattgtgcatattacattcctggtatctcccttgtgttcagcaacccagacattctccaactccagctgttgagggcgcttatgaacgcttcattatgcaggcatgattggtgaagtc-attgaccattggtgattaagtcagtcttcggccactatttcttcctggagcccagggggtgaggctgacagttccaagcctct----aatcacatggtttgttcttctgacaacaaccacccctttttctgaagctgtctacaagctttcagtcacccagtcatctcagtaacatcaccaaatgcattcttactatggt---gatcccaaaggtcttagaggctcttgtgttagaaacctgggactaagaccaaatattgaaacagaagatgcccc-atcactttcatcaccaaggcctttataagagcttgagaagctctttgccaggatgaggggcagaaaccaaatgtgtatttcttttc------tttttcttttgaacacagagtctctgtttcacccaatctggagtgcagtgatggtgttgtagctaactgcagcctcaaccacctgtgctcaagcaattctcccacctcagccttccaagcatctgggactacaggtgcacaccatctat-------------------gcccagctaattgttgtatttttt s panTro2.chr4_random 1470609 2223 - 6711082 CCTCCTCTTTTACTTGGGAGAAATGCACAGATTCTGGGTGCCATGTGCATTTGTTTTGGGAGTGATAATTGATCTAAC-TTATGGAAATAATACTAGAT----AGTTAGCGGATGGATTCTGTATCTGATGAGAGTTTTGGGCAAAACGAATTCCTAGTTTCTGAGTCTTA-TTTTTCCCCTGATTTAAGAAAACTGTGAACTATCCAGCCGGTAAAAATCTCTCACAGCTCTGGATGTGAGTTTAGGACACTGGATTTCTACCACTCATTTTCTTACTACTTTTCTTGCGCAAGGATCATGGCACAAGTTGCAGTTTCCACCCTGCCCATTGAAAATGAGGAGTCTGTTGAAGATGAGGAGTCCTTGGAGAGCAGGATGGTGGTGACATTCC---TGTCAGCTCTCGACTCCATGGTCAGACCTTCTGTTCTCACATTCTGCAGTTCGGTAGGACTGGGCGGTAGATAAGGTTGATTTGT-TTTTGTAGAACTTACAATTTTGTGATTTTTAGTTCTAATGAGTAGACCTTTTTCGTGAATAGTAGTTACGGTCAaacacctctgaccaaatgtgcatgtggagtttctacactgattttcagacaatctggatcccaactgggtatcccaaaattccatcctgacactccctggagttagtgcagaccccgcaggatgggagctcagtcccaggagtctaccctcactccacatgccaattgcaagtcttgggttgttacatgtagttttgaccaaccagttagaaaacagggt-ttcatgacccccattggtgggtggaatcatttgctcggacagattgcagaactcagaaaaacagattgttttctttt-ttttctgagatacagggtctcagtctgttgccaggctggaatgcagtagtgtgatcaaagctcactgtagcatgggactcctgggctcaagtgatcctcccacctcagcctcccaaatag------ctgagattataggcctgtaccagcatatctggctatgttctttta-ctttttgtagagatggggtcttgttatgttgcccaggctggtctcaaatttctgggctcacgtgatcctcccacctcaacttcacaaaatgctgggattatgggcatgaaccattgcatctcaccaatttactttcttttactggttcatttcaaaggctaaatctcagaaacagccagtgaaagagatgtacatgctgggcacagtggctcatgcctgtaatttcagcac-cttgggagactgaggcgggagcatcgcttaagtgctcaggagattaagaccagcctgggtaacaaggtgaaaatgcatctctacaaaaagatttttctaaaaattagccaggcacagttatctatagttatagctactcagtgcctataattctagctactcaggaggctgaggtgagaggatgagaggatggggcttgagatacggaggcatagttcgcagtgagccacgattgtgccatggcactctaggctgggagacagagccagactctgtctcaaaaaaaaaaaa-------------------taaaaccacacagggcaaggtatgtcgagaggggtacagaacttccatgtcctctattgtgcatgttaccttcctggtatctcccttgtgttcagcaacccagacattctccaactccagttgttgagggcgcttatgaacgcttcattatgcaggcatgattgatgaagtc-attgaccattggtgattaagtcagtcttcggccactatttcttcctggagcccagggggtgaggctgacagttccaagcctct----agtcacatggtttgttcttctgactacaaccacccctttttctgaagctgtctaggagctttcagtcacccagtcatctcagtaacatcaccaaatgcattcttactatggt---gatcccaaaggtcttagaggctcttgtgttagaaacctgggactaagaccaaatattgaaacagaagatgcccc-atcaccttcatcaccaaggcctttataagagcttgagaagctctgtgccaggatgaggggcagaaaccaaatgtgtatttcttttg-------ttttcttttgaacacagagtctctgtttcacccaatctggagtgcagtgatggtgttgtagctaactgcagcctcaacgacctgtgctcaagcaattctcccacctcagccttccaagcatctgggactacaggtgcacaccatccat-------------------gcccagctaatttttgta------ i panTro2.chr4_random C 0 I 8685 s ponAbe2.chr2a 109888780 2242 - 113028656 CCTCCCCTTTTACTTGGGAGAAATG--CAGATTCTGGGTGCCATGTGCATTTATTTTGGGAGTGAT-ATTGATCTAAC-TTATGGAAATAATACTAGATAGAAAGTTAGCAGATGGATTCTCTATCTGATGAGAGTTTTGGGCAAAACGAATTCCTAGTTTCTGAGTCTTATTTTTTCCCCTGATTCAAGAAAACTATGAATTATCCAGCCGGTGAAAAACTCTCACAGCTCTGGATGTGAGTTTAGGACACTGGATTTCTACCACTCACTTTCTTACTACTTTTCTTGTGCAAGGATCATGGCACAAGTTGCAGTTTCCACCCTGCCCATTGAAGATGAGGAGTCTGTTGAAGAT---GAGTCTTTGGAGAGCAGGATGGTGGTGACATTCTTAATGTCAGCTCTCGAGTCCATGGTCAGACCTTCTGTTCTCACATTCTGTAGTTCAGTAGGACTGGGCGGTAGATAAGGTTGATTTGT-TTTTGTAGAAGTTAAAATTTTATGATTTTTATTTCTAATGAATAGACCTTTTTCATGAATAGTAGTTATGGTCAaacacctgtaaccaaatgtgcatgtggagtttctacgctgattttcggacaatctggatcccaactgggtatcccacaattccatcctgacactccctggagttagtgcagaccctgcaggatgggggctcagtcccaggagtctaccctcactccacatgccaattgcaagtcttcagttgttacatgtagttttgaccaaccagttagaaaacagggt-ttcatga-caccgttggtgggtggaatcatttgctcggacagcttgcagaactcagaaaaacagattgttttattttcttttctgagatacagggtcttagtctgttgccaggctggaatgcagtggtgtgatcaaagctcactgtagcatgggactcctaggctcaagtgatcctcccacctcagcctcccatatagctgagactgagactataggctcgtaccagcatatctggctatgttctttcc-ttttttgtagagatggggtcttgttacgttgcccaggctggtctcaaatttctgggctcacatgatcctcccacctcaacttcacaaaatgctaggattatgggcgtgagccactgcgtctcaccaattta----cttctactggttcattttaaaggctatatttcagaaacagccagtgaaagtgatgtacctgctggacacagtggctcatgcctgtaatttcagcac-tttgggagactgaggcgggagcatcgcttaagtgctcaggagattaagaccagcctgggtaacatggtgaaaacgcatctgtacaaaaagatttttctaaaaattagccaggtgcagtgatctatagttctggctactcagtgcctgtaattctaggtactcaggaggct--------aggatgagaggatggggcttgagctagagaggcacaggtcacagtgagccacgattgtgccatggcactttaggctgtgagacagagccagaccttgtctccaaaaaaaaaaaaccaacaaaaaaacaacaacaagaaaacacagggcaaggtctgttgggaggggtacagaacttccatgctctctattgtgcatgttaccttcctggtatctgccttgtgttcagcaacccagacattctccaaatccagttgttcagggcgtttacgaaggtttctgtaagcaggcatgttagatgaaatc-attgaccattggtgattaagtcagtcttcggccagtatttcttcctggagcccagtgggtgaggctgac---cccaagcctctaatcaatcacatggttggttcttctg---gcaaccagcccttattctgaagctgtctaggagctttcagtcacccagtcatctcagtaacatcaccaaatgcattcttattacggt---gatcccaaaggtcttagaggctcttgtgttagaaacctgggactaagaccaaatattcaaacaaaagatgcccctatcacctttatcaccaaggcctttgtaagaacttaagaaactctgtgccaggacgaggggcagaaaccaaaGGTGTAttttttttg------tttttcttttgaacacagag--tctgtttcacccaatctggagtgcaatgatgcagtcgtagctaactgcagcctcaaccacctggggtcaagcaattctcccgcctcagccttccaagcctctgggactacaggtgcacaccatccat-------------------gcccagctaatttttgtatttttt i ponAbe2.chr2a C 0 M 321 s rheMac2.chr9 90592361 2219 - 133323859 CCTCCTCTTTTACTTGGGAGAAATGCACTGAATCTGGGTTCCATATGGATTTATTTTGGGAGTGAT-ACTGTTATAACTTTATGGAAATAATACTGGATAGAAAGTTAGTGGATGGATTCTCCGTCTGATGAGAGTTTTGGGCAAATCGAATGTCTGGTTTCTGAGCCTTA-TTTTTCCTCTGATGCAAGAAAACTGTAAATTAGCCAGCCAGTGAGAAACTCTCACAGCTCTGGGTGTGGGTTTAGGACACTGGATTTCTACCACTCACATTCTTGCTACTTTTCTTGCACAGGGATCATGGCCCAAGTTGCAGTGTCCACCCTGTCCGCTGAAGATGAA------------------GAGTCCTTGGAGAGCAGGATGGCTGTGACATTCCTCATGTCAGTTCTCGAGTCCATGTGGAGACTTTTTGTTCTAACATTCTATAGTTGAGTAGGACTGGGCTGTAGATAAAGTTGATTTGTGTTTTGTAGAACATACAGTTTTATGGTTTTTAGTTCTAATGAATAGTTCTTTTTCTTGAATAGTAGTTATGGTCAGATGCTTCCAACCAAATGTGCGTGTGGAGATTCTACACCAGTTTTTGGACAATCTggataccaactgggtatcccccaattccgttctgacactacctggagtttgtgccgactcctcaggataggggctcagtcccacaagactactttcacttcacatgccaattgcaagtcctaggttgttagatgtacttttgaccaaccagttagaaaccagggtcttcatga-cccccttcttgggttgaatcatttgctagaacagcttgcagaactcagaaaaacaggttattttctttt-ttttctgagatacagagtctcactgtgttgccaggctgcaattcagtggtgtgatcaaagcccactgtagcctcgaactcctgggctcaagtaatcctcctgcctcagccttcca-----------atgagacatcaggcctgcatcaccatatctggctatattcttttatttttttgtagagatggggtcttgttatgttgcccaggctggtctcaaatttctgagctcacatgatcctcccatctcaacctcccgaagtgctgggattatgggcatgaaccactggatctcaccaatttgccttctattactggttcattgtaaaggatatatttcagaaacagccagtgaaagagatgtacatgtagggcacagtggttcatgcatataatgtcagcacttttgggagactgaagtgggagcattgcttaa--gctcaggagtttaagtccaggctgggcaacatggtgaaatctcatctctacaaaaa-atttttctaaaaattagtctgatgcagtgacat-----------------gtgcctagagttctagctactcaggaggctgaggtgaaaggat----------ggcttgagctagggagtcttaggtttcagtgatccacgattgtgccactgcactctagcctgggagacagagacagaccttgtctcaaacaaaaacaa----aaaaaaaggaaataaaagagatgcacagggcaaggtatgtggggaagggcacagagcttccatgccttctcttgggcatgttaccctcccagtatcccccttgtgttcagcaacccagacactctccaaaccctgttgtttagggtgtttatgaaggcctcattatgcaggcatgattgatgaaatcaattgaccattggtgattaagtcaatcttcagca-------cttcctggtgctcagtgggtgaggctgacagctccaagcctct----attcacatggtttgttctg------gcaaccagccctcctcctgaagctgtctaggagctttcagtcacctagtcatctcagtagcattattaattgtattattactatggtggagatcccaaaggtcttagaggttcttgtgttagaaacctgggactaagaccaaatattgaaacaaatgatgctcctataaattttatcactgacaactttatgagaactttagaagctctgtgccaggaccaggggcagaaaccaaatgtgtatttctttttttctttttttccttttgaacacagtctctctctctcttccaaactgaagtgcaatgaagcagtcatagctaactgcagcctcaacctcctgggctcaagcaattctcccacctcagccttcgaagtatctgggactacaggtatgcaccatccatttaatttttgtattttttagcccagctaatttttgtatttttt i rheMac2.chr9 N 0 C 0 a score=11315.000000 s hg19.chrUn_gl000243 37269 48 + 43341 tgtagagataggatcttgttatattgccgaggctggtcttgaactctg s panTro2.chr4_random 1481517 48 - 6711082 tgtagagataggatcttgttatattgccgaggctggtcttgaactctg i panTro2.chr4_random I 8685 C 0 s rheMac2.chr9 90594580 48 - 133323859 aatagagatgggatcttgttatgttgccaaggctggtctcgaactcct i rheMac2.chr9 C 0 C 0 e ponAbe2.chr2a 109891022 321 - 113028656 M a score=660512.000000 s hg19.chrUn_gl000243 37317 1420 + 43341 gggctaaagcgatcctttcaccacaacctctcaagtagctgaaactacagatgcatactaccatgcccagcTAAtt-----ttttcttatttc------tttttgttgtttaattgagggggtctcgctgtgtttcccaggctggtcctgaagttttggcctcaagcgtttctcctcctttgacctcctaaactgttgggattatggttgtgagccacggcCTCtgtgtccagcaatcacaagaggtctttataagtgaaagagggaggtaagagagtccgaattgaaggagatttgatgatggaagcacaggtcacagagggagatttgaatatgctttgcttcaggctttgaagatgcagttaggggccatgagccaaagaataggagtggc-tttagcaactgggaaaggcaagggaacatattctctccagaacctccagaagggatgcagtcctgctggcaccttgactttagccttaatagacctattttggacttctggcccccagacctcttagtgagtagatttgtggtgtattaagccactcaatgtagggtagtttgtaacagcggcaagaagaaatgaacaTGAAGCCAGAATTggtggcccacacctataattccagctatttaggaggctgaggcaggatggttgctttggcccaggagttcacgataagtctgggcaacaaaatgataccctgtctacatggaaaaaaaaaaaaattagcgggtgtggtggcatgcacttgtagtcttagctactagaggccctgaggcaggacaatttcttgacctaggagctccaggtctcagtgcgttgtgatcgtgccatggcaccccagtctgagtgacacagcgagattatatcttagaaaaaaaaagaaaaaagaaaTGAGTGAGCATGGCAGGAATAGGGACAGATAgcaatattaaatagagtggtcagggttggcctcctaagtgaaaa-ttgagcaaagac--ttgaaggaggggaaggagctggccaaggtactgagggaagagcattttaggcagaaacaacagaataaagatgctaagagggaactccgtggtgtgtctgaagctcaggaaagaggtct-gtggagtagaga------------------gagggagagaagtagggaaggaggccagggagttgttggactcagatcagtacagattgtgtaagccctgggaggctattgctggggctttggtttttattctgtctgagatgggagatgcggaagggttctgagcagagagttgacacgaactgtctactgatttaaaagcatcccatggcagctgagttgacaaagattgtgggaagatttgggtagaagcagggaggccatgctgtggcaacctccaggtgggagatgatagtggttctgaccagggccctggcaatggtgagagatggttgattctTGTTG s rheMac2.chr9 90594628 1429 - 133323859 gggctaatgcgattgtttcacctcagtctctcaagcagcctaaactacagatgcataccaccatacccagctATTTTTTTCTTTTCTTATTTCGttttgtttttgttgtttagttga--ggatctaactatgtttcccaggctggtctcaaactcctggcctcagacgtttc-ctcgctttgacctcctaaactgttgggattatgggtgtaagccatggcCACtgtgtccagcagtcacaagtgat-tttgtaagagaaagagggaggtaagagagtcagaattggaggagatctgatgacggaagcagaggtcagagagggatatttgaatatgcttcgtttctggttttgaagatgcagttaggggccatgagctaaggaatggcagtggcttttagaagctgggaaaggcaagggaacacatcctctctggagcctccagaaggaatgcagtcctgctgacaccttgactttagccttaattgacctattttggacttctggctcccagaactgttaggtggtagatttgtggtgtattaaggcactcaatgtagggcagtttgtaacagctgcaggaagaaaTGAACATGAACccaggggtggtggcccacacctataattccaggtatttaggaggctgaggcaggaggattgctttggcctaggagttcaagacaagcctgggaagcatagtgatgccccatcta--------agaaaaaaaaatagcaggtgtggtagtatgcacctgtagtcttagctactagaaaggctgaggcaggatgattttttgacctatgagtttgaggtctcagtgcattgtgattgtgccatggcaccctagcctgagtgacacagcaagatt-----ttgtaaaagaaaaaaaaaaagaaaTGAGTGAGTATggcatgaatgaggacagatggcaatattaaata-agtgttcagggttgg---cctaagtgaaaatttgaggaaagac--ttgaaggagggaaagtagctggccaaggtgctgaggtaagagcattgtaggcagaaacaacagaataaagatgccagtagggaactccatggtgtgtctgaaacttaggaaagaggcagagtgagggagagaagtaggggaggaggccatgagggagagaagtaggggaggaggccagggacttgttgggctgagatcagtacagatagtgtaagccctgagaggctattgctggggttttggcttttactctgactgagatgggaaccgtgggaggattttgagcagagaggcaacatgaactgtttcctgatataaaaacatcccttggctgctgtgttgagaaagattgtgggaagatttgggtagaagcagggagaccaagtcgtggcaacatccaggtgggagata--agtgtttctgaccagggtcgtggcaatggtgagagatggttgattctTATTG i rheMac2.chr9 C 0 C 0 s ponAbe2.chr2a 109891343 1408 - 113028656 gggctaaagcgatcctttcaccacag-ctctcaagtagctgaaactacagatgcatatcaccatacccagctaatt-----ttttcttacttc------tttttgttgtttaattgagggggtctcactgtgtttgccaggctggtccagaacttctggcctcaagcgtttctcctgctttgacctcctaaactgttgggattatggttgtgggccacggcCTCtgtgtccagcaatcacaagaggtctttataagtgaaagagggaggtaagagaggcagaactgaaggagatttgatgatggaagcacaggtcacagagggagattctaatgtgctttgcttccggctttgaagatgcagttaggggccatgagccaaagaataggggtggc-tttagcaactgggaaaggcaagggaacacattctctccggaacctccagaagggatgcagtcctgctgacaccttgactttagccttaatagacctattctggacttctggcccccagatctgttaggtagtagatttgtggtgtattaagccactcaatgtagggtagtttgt-acagcagcaagaagaaaTGAACATGAagccaggggtagtggcccacacctataattctagctatttaggaggctgaggcaggatggttgctttggcccaggagttcaagataagcctgggcaacaaagtgataccctgtctacatgg-----aaaaaaaattagcgggtgtggtggcatgcacttgtagtcttagctactagaggcgctgaggcaggacgatttcttgacctaggagttccaggtctc--tgtgttgtgatggtgccatggtgccccagcctgagtgacacagcgagattatatctt---aaaagaaagtaaaaagaaaTGAGTGAGCATGGCAGGAATGGGGACACATAgcaatattaaatagagtggtcagggttggcttcctaagtgaaaa-ttgagcaaagacttttgaaggaggggaaggagctggccaaggtactgagggaagagcgttgtaggcagaagcaacag--taaagatgctaagagggaactccgtggtgtgtctgaagctcaggaaacaggcct-gtggagcagaga------------------gagggagagaagtagggaaggaggccagggagttgttgggctcagatcagtacagattgtgtaagccctgggaggctattgctggggctttggcttttattctgtctgagatgggaaatgcggaagggttctgagcagagaggtgacatgaactgtctactgatttgaaagcatcccatggtggctgagttgaggaagactgtgggaagatttgggtagaagcagggaggccaagctgtggcaacatccaggtaggagatgatagtggttctgaccagggtcctggcagtggtgagagatggttgattctTGTTG i ponAbe2.chr2a M 321 C 0 s panTro2.chr4_random 1481565 1417 - 6711082 gggctaaagcgatcctttcaccacaacctctgaagtagctgaaactacagatgcatactaccatgcccagctAAtt-----ttttcttatttc------tttttgttgtttaattgagggggtctcgctgtgtttcccaggctggtcctgaagttttggcctcaagcgtttctcctgctttgaactcctaaactgttgggattatggttgtgagccacggcCTCtgtgtccagcaatcacaagaggtctttataagtgaaagagggaagtaagagagtccgaattgaaggagatttgatgatggaagcacaggtcacagagggagattcgaatatgctttgcttctggttttgaagatgcagttaggggccatgagccaaagaataggagtggc-tttagcaactgggaaaggcaagggaacatattctctccagaacctccagaagggatgcagtcctgctgtcactttgactttagccttaatagacctattttggacttctggcccccagacctgttagttagtagatttgtggtgtattaagccactcaatgtagggtagtttgtaacagcagcaagaagaaaTGAACATGAAGCCAGAATTggtggcccacacatataattccagctatttaggaggctgaggcaggatggttgctttggcccaggagttcacgataagtctgggcaacaaaatgataccctgtctacatgg---aaaaaaaaaattagcgggtgtggtggcatgcacttgtagtcttagctactagaggccctgaggcaggacaatttcttgacctaggagctccaggtctcagtgcattgtgatcgtgccatggcaccccagtctgagtgacacagcgagattatatcttagaaaaaaaaagaaaaaagaaaTGAGtgagcatggcaggaataggaacagatagcaatattaaatagagtggtcagggttggcctcctaagtgaaaa-ttgagcaaagac--ttgaaggaggggaaggagctggccaaggtactgagggaagagcattgtaggcagaaacaacagaataaagatgctaagagggaactccatggtgtgtctgaaactcaggaaagaggtct-gtggagtagaga------------------gagggagagaagtagggaaggaggccagggagttgttggactcagatcagtacagattgtgtaagccctgggaggctattgctggggctttggtttttattctgtctgatatgggagatgcggaagggttctgagcagagaggtgacacgaactgtctactgatttaaaagcatcccatggcagctgagttgagaaagattgtgggaagatttgggtagaagcagggaggccatgctgtggcaacctccaggtgggagatgatagtggttctgaccagggccctggcaatggtgagagatggttgattctTGTTG i panTro2.chr4_random C 0 C 0 a score=38050.000000 s hg19.chrUn_gl000243 38737 86 + 43341 AAATGTTAAGTAATT---AAAAAAAAACCACTACTGCTTTTCCCAATTATATGAAGTATGGGATGCTAGATTACAGAGATCTTAAGTCG s panTro2.chr4_random 1482982 87 - 6711082 AAATACTAAGTAATT--AAAAAAAAAAACACTACTGCTTTTCCCAATTATATGAAGTATGGGATGCTAGATTACAGAAATCTTAAGTCG i panTro2.chr4_random C 0 C 0 s ponAbe2.chr2a 109892751 89 - 113028656 AAATACCAAGTAATTAAAAAAAAAAAACCACTACTGCTTTTCCCAATTATATGAAGTATGGGATGCTAGATTAAAGAAATCTTAAGTCG i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90596057 87 - 133323859 AAATACTAAGTAATT--AAAAAAAAAAAAAGTACAGCCTTTCCCAATTATATGAAGTATGGGATGCTAGATTAAAGAAACCTCAAGTCA i rheMac2.chr9 C 0 C 0 s danRer6.Zv8_NA1214 670 61 - 32252 AAATCCAAAGTG-----CAAAGAAAAAATAAAACCCTCTTTCTC-TTTAGATGACATA----ATCTTATAT------------------ i danRer6.Zv8_NA1214 N 0 N 0 a score=161646.000000 s hg19.chrUn_gl000243 38823 291 + 43341 ggccaggtgtagtggcttatgcccgtagcttcagcactttgggaggcagagatgggagaatggtttgagtccaggagtttgagaccaccctgggcaacacagcaagacttcctgtctatgcaaataaaaaTTAATAAAATATAATTATCCCGGCATAGTGGTATTTTCCTGTAGAACCTGTTACTTAGGTTGTTgaggtgggcagatctcttgagggcgggagtttgagg-------------------------------ccagcttgggcaac-atagcaaggctcctctttctacaaaaaaaaaaaaaaaaaaaaaaaat s panTro2.chr4_random 1483069 288 - 6711082 ggccaggtgcagtggcttatgcccagagcttcagcactttgggaggcagagatgggagaatggtttgagtccaggagtttgagaccaccctgggcaacacagctagacctcctgtctatgcaaataaaaaTTAATAAAATATAATTATCCCGGCATGGTGGTATTTTCCTGTAGAACCTGTTACTTAGGTTGTTgaggtgggcagatctcttgagggcgggagtttgagg-------------------------------ccagcttgggcaac-atagcaaggctcctctttctacaaaaaaaaaaaaaaaaaaaaaa--- i panTro2.chr4_random C 0 C 0 s ponAbe2.chr2a 109892840 287 - 113028656 ggccaggtgcagtggcttatgcctgtagcatcagcactttgggaggcagagatgggagaattgttcgagtccaggagtttaagaccaccctgggcaacatagcaagacctcctgtctatgcaaataaaaattaataaaatatgattatccagggatagtggtattttcctgtagacccagttactcaggttgtcgaggtgggcagatctcttgaaggtgggagtttgagg-------------------------------ccagcttgggcaac-atagcaaggctcctctttctacaaaaaaaaaaaaaaaaaaaaT---- i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90596144 269 - 133323859 ggcca-gtgcagtggcttatgcctgtagtgccagcactttgggaggcagagatgggaggactgtttaagtccaggagtttgagactacccttggcaacatagtaagatctcctttctacccaaataaaaa-----aTAATATAATTATccaggcatggtggtatgtgtctgtagaaccagttacgccagttgttgaagtgggcagatctcttgaaggtgggagtttgagg-------------------------------ccagtttgggcaac-atagcaaagcttctttctccacacagaaaaa---------------- i rheMac2.chr9 C 0 C 0 s danRer6.Zv8_NA6697 3667 315 - 4749 GGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCTGAGGCGGCCAGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGACAAACCCCGTCCCTACTAAAAAAAAAT--------ACAAAATTAGCCAGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGGGGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTTCATCTCaaaaaaaaaaaaaaaaacaaagcaaaaat i danRer6.Zv8_NA6697 N 0 N 0 a score=149384.000000 s hg19.chrUn_gl000243 39114 356 + 43341 tagctgggtgttttggtgttcatctgtagccgtagctatggtgagggtgaggcaggaggatccccggagcccaggaggtcacggctgcagttagctatgagtgcacccctgcattgcagccagagtgacagagtgagacccggtctcagaaTACAGATACAAGTAAAGAAATCTCAGCTCAGAGCAGTCTGTTTGTCACTATGCAGCCTTTGCAACCCCATAGCTGCGCGATTGGGTTTGTGTTGCTGGAGGTGAGGAGACCCGTGCCCAGGTGTTGTTGCCTGTCTAATCAGtttattttaaaatatattaatGaaatttatttcatcatactttatggcctcatacctgaatgg s panTro2.chr4_random 1483357 356 - 6711082 tagctgggtgttttggtgctcatctgtagccgtagctatggtgagggtgaggcaggaggatccccggagcccaggaggtcacggctgcagttagctatgagtgcacccctgcattgcagccagagtgacagagtgagacccggtctcagaaTACAGATACAAGTAAAGAAATCTCAGCTCAGAGCAGTCTGTTTGTCACTATGCAGCCTTTGCAACCCCATAGCTGCGCGATTGGGTTTGTGTTGCTGGAGGTGAGGAGATCCGTGCCCAGGTGTTGTTGCCTGTCTAATCAGtttattttaaaatatattaatGaaatttatttcatcatactttatggcctcatacctgagtgg i panTro2.chr4_random C 0 C 0 s ponAbe2.chr2a 109893127 338 - 113028656 TAgccgggtgtcgtggtgctcatctgtagtcgtag-gatggtgaggctgaggcaggaggatccctgcagcccaaga--------ctgcagttagctatgagtgcaccactgcactgcagtcagagtgacagagtgagaacctgtctcagaaTACAAATACAAGTAAAGAAATCTCAATTCAGAACAGTCTCTTTGTGACTA---------TGCAACCCCATAGCTGAGTGATTGGGTTTGTGTTTCTGGAGGTGAGGAGACCCGTGCCCAGGTGTTGTTGCCTGTCTAATCAGTTTATTTTAAAATACGTTAATGaaatttatttcatcatactttatggcctcatagctgagtgg i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90596413 341 - 133323859 tagctgggagttgtggtgctcacttgcggtcctagctatggtgaggctgaggcaggaggatcccctgagactaggaggtcaaggctgcagttagctatgagtgcaccactgcattccaaccagagtgacagagtaaaaccctgtctcaaaaTACAAATATAACTAA--AAATCTTAAATCAGACCAATCCCTTTTTGACTGTGCAAGCTCCTCAACCTCATAGCTGCGTGACTGGGTTTGTGTTGCTGGAGATGAGGAGACCTGTGCCCAGTTGTTG----CTGCCTAATCaatttatttttaaatatattaatGaaatttatttcatcgtactttacatcctcata--------- i rheMac2.chr9 C 0 I 9 a score=120389.000000 s hg19.chrUn_gl000243 39470 266 + 43341 ttttttgaattctcctttgaatagcttgtaactattcaaacctcttattggttcta----taattaattCTTTTTCTAATTAGCTTTTTAAAAATCAGAATTGATATTAGA----CTAATCAGT---TATTAATGAGGAGATGAAATTGAGTTGTTTGTACACTTTATCTAAGA-TAGTGTT------ATATTGGCTAACTCAAATCAGTAGTTCAGCAAATGCAGAATCAGAGCTTCTTCAGCGTGGAACTCTCTTGTGGTTCTTGAAGATGCCAtttctttc s panTro2.chr4_random 1483713 266 - 6711082 ttttttgaattctcctttgaatagcttgtaactattcaaacctcttattggttcta----taattaattCTTTATCTAATTAGCTTTTTAAAAATCAGAATTGATATTAGA----CTAATCAGT---TATTAATGAGGAGATGAAATTGAGTTGTTTGTACACTTTATCTAAGA-TAGTGTT------ATATTGGCTAACTCAAATCAGTAGTTCAGCAAATGCAGAATCAGAGCTTCTTCAGCGTGGAACTGTCTTGTGGTTCTTGAAAATGCCAtttctttc i panTro2.chr4_random C 0 I 9256 s ponAbe2.chr2a 109893465 275 - 113028656 ttttttgaattctcctttgaatagcttgtaactattcaaacctcttattggttcca----taattaattCCTTTTTTGATTAGCTTTTTAAAAATCAGAATTGATATTAAACTACCTAATCAGT---TATTAACGAGGAGATGAAATTGAGTTATTTGTACACTTTACCTAAGA-TAGTGTTATATTCATATTGGCTACCTCAAATCAATAGTTGAGCAAATGCAGAATTAGAGCTTCTTCAGCGTGGAACTCTCTTGTGGTTCTTGAAGATGCCAtttcttc- i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90596763 270 - 133323859 ttttttgaattctcctttaaatagcttgtaactattcaaacatcttattggttccataattaattaatTCTTTTTCTAATTAACTTTTTAAAAATCAGAATTGATGTTAGA----CTACTCAGTTTCTGTTAATGAGGAGATGAAGTGGAGTTGTTTGCACACTGTACCTAAGGTTAGTATC------ATATTGGTTAAATCAAATCAATACTTCAGCAAATGCAAAATTAGAGCTGCTTCAGCATGGAACGCTCTCATGGTTCTTGAAGATGCCATTTC---- i rheMac2.chr9 I 9 I 49 a score=86433.000000 s hg19.chrUn_gl000243 39736 343 + 43341 ttttttttttttgagacagcatcttcctctgtcaccaggctcgagtgcagtggcacaatctcaattcacagcaacttctgcctcccgggttcaagcatttcttttgcctcagcctctgaagtagctgggactacaggcacatgccaccatgcccggctaagctttgtattttctgtagatacggggtttcagcatgttggacaggctggtcttgaactcctgaccttgtgatccactggccttggactcctaaagtgctgggattacaggtgtgagccaccgtgcctggccTCTTTTTTCAGTCTTTAATAAA---CTGCTGCCATCATTTCAGACCACTTGCTAT s ponAbe2.chr2a 109893740 343 - 113028656 --tattttttttgagacggcgtcttcccctgtcaccaggctggagtgcagtggcacaatctcgatacacagcaacttctgcctcccgggtttaaacatttctcttgcctcagcctctgaagtagctgggactacaggcgcatgtcaccatgctcaggtaatttttgtattttcagtagataaggggtttcagcatgttggcctggctggtcttgaactcctgaccttgtgatccaccggccttggactcctaaagtgctaggattacaggcatgagccaccgcgcccggccTCTTTTTTCAGTCTTTAATAAACCGCTGCTGCCATCATTTCAGACTACTTACTA- i ponAbe2.chr2a C 0 C 0 s panTro2.chr4_random 1493235 343 - 6711082 ttttttttttttgagacagcatcttcctctgtcaccaggctcgagtgcagtggcacaatctcaattcacagcaacttctgcctcccaggttcaagcatttcttttgcctcagcctctgaagtagctgggactacaggcacatgtcaccatgcccggctaagctttgtattttctgtagatacggggtttcagcatgttggacaggctggtcttgaactcctgaccttgtgatccactggccttggactcctaaagtgctgggattacaggtgtgagccaccgtgcctggccTCTTTTTTCAGTCTTTAATAAA---CTGCTGCCATCATTTCAGACCACTTGCTAT i panTro2.chr4_random I 9256 C 0 e rheMac2.chr9 90597033 49 - 133323859 I a score=270490.000000 s hg19.chrUn_gl000243 40079 572 + 43341 TTTAGGCACTTAGAAATTTTTCACTGGAATTCATGTAAAGAAAGACCATGGGTGTTTGTACTGGATTTAGTATTCATCCTTCGACTGCATGACTCACCCCTAGTGCCATAATTTTACTAAAGAATTTTTCAGATACTACTCAGCTGGCCACTGAACCTAACCAGCAACCCACCCTCAACCATTCAGTGGTCTTTTGTTCTTCTATGTTCCTCCTGAATGTTGATTACTCTCAGAAGGTGATAAAAACTTGGAtttc----tttttttttttctttctagagacagggttttgttctgtcacccaggctgcagtgcaatggcatgatcatggttcactgcagcctgaaa-ccccggactcaaacagtcctcccacctcagcctcccaagtagctgggact-acat-acatttgcccctattcccagctaacttctttattttttattgtacagatgggatcttgctgtgttgctcaggatgttgtcagactcctggcctcaagtgatcattctgcctcagcttcccaaagtgcttggattatatgtatgtgggagccaccTGTGTTCAATGCCCAttttc s panTro2.chr4_random 1493578 569 - 6711082 TTTAGGCACTTAGAAATTTTTCACTGGAATTCATGTAAAGAAAGACCATGGATGTTTGTACTGGATTTAGTATTCATCCTTCGACTGCATGACTCACCCCTAGTGCCATAATTTTACTAATGAATTTTTCAGATACTACTCAGCTGGCCACTGAACCTAACCAGCAACCCACCCTCAACCATTCAGTGGTCTTTTGTTCTTCTCTGTTCCTCCTGAATGTTGATTACTCTCAGAAGGTGATAAAAACTTGGAtttc-------ttttttttctttctagagacagggttttgttctgtcacccaggctgcagtgcggtggcatgatcatggttcactgcagcctgaaa-ccccgggctcaaacagtcctcccacctcagcctcccaagtagctgggact-acat-acatttgcccctatgcccagctaacttctttattttttattgtacagatgggatcttgctgtgttgctcaggatgttgtcagactcctggcctcaagtgatcattctgcctcagcttcccaaagtgcttggattatatgtaggtgggagccaccTGTGTTCAATGCCCAttttc i panTro2.chr4_random C 0 C 0 s ponAbe2.chr2a 109894083 578 - 113028656 TTTAGGCACTTAGGAATTTTTCACTGGAATTCATGTAAAGAAAGACCGTGGGTGTTTGTACTGGATTTAGTATTCATCATTCGACTGCATGACTCACCCC-AGCGCCATAATTTTACTAACAAATTTTTCAGATACTACTCAGCTAGCGACTGATCCTAACCAGCAACCCATCCTCAACCATTCAGTGGTCTTTTGTTCTTCTCTGTTCCTCCTGAATGTTGATTACTCTCAGAAGGTGATAAAAACTTGCAtttctttttttttttttttcttcctagagacagggtcttgctttgtcacacaggctgcagtgcagtggcgtgatcatggctcactgcagcgtgaaacccccaggctcaaacattcctcccacctcagcctcccaagtagctgggactaacataacatttgcccctatgcccagctaacttctttattttttattgtacagacgggatcttgctgtgttgtccaggatggtgtcaagctcctggcctcaagtgatcattctgcctcagcttcccaaagtgcttggattatacataggtgggagccaccTGTGTTCAACGCCCAttttc i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90597082 572 - 133323859 TTTAGGCACTTAGGAATTTTTCACTGGAATTAATGTAAAGAAAGACCATGGGCATTTGTAATGAATTTAGCATTCATCATTCGATTGCATGACTGATCCCTAGAGCTGTAATTTTACTAATGAATTTTTCAGATACTACTCAGCTAGCAACTGAGCCTAAGCAGCAACCCACCCTCAACCATTCAGTGGTCTTTTGTTCTTCTCTATTCCTCCTAAAAGTCGATTACTCTCAGAAGGTGATGAAAACTTACAtttc-----ttttgtttttcttcctagagacaagctattgctctgtcacccaggctgcagtgcagtggcttgatcatgcctcactgcagcctgaaatccctaggctcaaacagtcctcccatatcagcctcccaagtagctgggact-acag-atgtttgccattatgcccagctaacttctttattttttattattgagatggaatcttgctatgttgcccaggatggtgtcaaattcctggcctgaagtgatctttctgcctcagcttcccaaagtgctggaattatacgcaggcctttgccaccTGTATTCAACCCCCAttttc i rheMac2.chr9 I 49 I 73 a score=6779.000000 s hg19.chrUn_gl000243 40651 33 + 43341 tttttctttctttcttttggagacggactctca s ponAbe2.chr2a 109894661 29 - 113028656 tttttctttcttttt----gagatggactctcg i ponAbe2.chr2a C 0 C 0 s panTro2.chr4_random 1494147 33 - 6711082 tttttctttctttcttttggagacggactctca i panTro2.chr4_random C 0 C 0 e rheMac2.chr9 90597654 73 - 133323859 I a score=659688.000000 s hg19.chrUn_gl000243 40684 1470 + 43341 ctctgtcatgcaggctggaatgcagtggtgtgatctcagctgactgcaacctccacctccctggttcaagcaactcccctgcctcagcctcccgactagctggaattacaggcccatgtcaccactctcagctaatattcttgtatttttagtagagacagagtttcagtatgttggccagactggtctcgaactcctgaaatcaggcaatccacccaccttggcctcccagtg-tgctgagatcagaggcgtgagtcaccacaccATGCCCAGCCATTTTTAAAAtaataacgttattgaaatatgattaacgtatcatgcaattcatttatcaaagtacacaattcaggccaggtgcagtggctaattcctataacgctaagactttgggcagctgaggcaggtggatcgcttgtgttcaggagtttgcgactagcctgggcaacatggcaaaacagcatctctagcaaaaatacaaaaattagctgggtgtggtggctcatgcct-gtagtcccaactactt-ggggacatgagactggaagatcacttgagcccagaagccataggttgcagtgagaccagatggcaccactgcactacagcatgggtgacaaaaggagacc--gtctttaaataactaaagaaaaaaagaaagtatacaattgagtggtttttagaatattcaaggagctgtgcatccatcaccacagtctttcttagaagtgattacccacttgtgagttacccacttatgagtgagaaaccctcacctcttagccgttacctcctacgtaccccatg----------ttcataggcaaccagtgatttattttctgtcattgtagttttgcctaatctggaccttttatagaaatagaattgtacaatgtgtgatcttttgtaatttgcttttttttctcttagcagaatgttttcaaatttctttcatgttatagtgtgtatcaggatttctttccttttgtagctgagtaatagtttatgtttatccattcattagttgatggacatttgtgttgtttttgcgtattcaccatcatgagtcaggctgctatgaacactcgtacgtaagttttagtgtgaacatatatttttatttctcttggatttacactcaggagtgaaattgttgcattatgtgattactatacatttagtctttgagaaactgccacgttgtttttcaaagtggttacacTggtcaggcacagtggctcacacctttaatctcaggtatttgagacgctgagtttggaggattttcttagctcgggagttcaggagcaccctgggcaacatagggaaacAATATCTTGATTTTTTAAAAAAATCAAATGCCAAGA----AAACACccaaa--------------ttgattacaccattttatattcccaccagtaatgtatgtgagttccaagtattcca-attgtcaccaac-tttttttttttttttgagacaaaatcttgctctgttgc s panTro2.chr4_random 1494180 1469 - 6711082 ctctgtcatgcaggctggaatgcagtggtgtgatctcagctgactgcaacctccacctccctggttcaagcaactcccctgcctcagcctcccgactagctggaattacaggcacatgtcaccactctcagctaatatttttgtatttttagtagagacagggtttcagtatgttggccagactggtctcgaactcctgaaatcaggcaatccacccaccttggcctcccagtg-tgctgagatcagaggcgtgagtcaccacaccATGCCCAGCCATTTTTAAAAtaataacgttattgaaatatgattaacgtatcatgcaattcatttatcaaagtacgcaattcaggccaggtgcagtggctaattcctataacgctaagactttgggcacctgaggcaggtggatcgcttgtgttcaggagtttgcgactagcctgggcaacatggcaaaacagcatctctagcaaaaatacaaaaattagctgggtgtggtggctcatgtct-gtagtcccaactacttgggggacatgagactggaagatcatttgagcccagaagccataggttgcagtcagaccagatggcaccactgcactacagcatgggtgacaaaaggagaccctgtctttaaataactaaagataaaaagaaagtatacaattgagtggtttttagaatattcaagaagctgtgcatccatcaccacagtctttcttagaagtgattacccacttgtgagttacccacttatgagtgagaaaccctcacctcttagccgctacctcctacgtaccccatg----------ttcataggcaaccactgatttattttctgtcattgtagttttgcctaatctggaccttttatagaaatagaattgtacaatgtgtgatcttttgtaatttgcttttttttctcttagcagaatgttttcaaatttctttcatgttatagtgtgtatcaggatttctttctttttgtagctgagtaacagtttatgtttatccattcattagttgatggacatttgtgttgtttttgcgtattcaccatcatgagtcaggctgctatgaacactcgtacgtaagttttagtgtgaacatatatttttatttctcttggatttacactcaggagtgaaattgttgcattatgtgattactatacatttagtctttgagaaactgccacgttgcttttcaaagtggttacacTGgtcaggcacagtggctcacacctttaatctcagatatttgagacgctgagtttggaggattttcttagctcgggagttcaggacaaccctgggcaacatagggaaacaatgtcttgattttttaaaaaaaTCAAATGCCAAGA----AAACACccaaa--------------ttgattacaccattttacgttcccaccagtcatgtatgtgagttccaattattaca-attgtcaccaac----ttttttttttttgagac-aaatcttgctctgttgc i panTro2.chr4_random C 0 N 0 s ponAbe2.chr2a 109894690 1468 - 113028656 ctctgtcacggaggctggagtgcagtggcatgatctcagctgactgcaacctccacctccctggttcaagctattcccctttctcagccttccgactagctggcattacaggcacatgccaccacactcagctaatgtttttgtatttttagtagggacggggtttcagtgtgttggccagactggtctcgaactcctgaaatcaggcaatctgcctgccttggcttccaaaagttgctgatattacaggcgtgagccaccac-----gcctggccCTTTTTAAAAtaataatgttattgaaatatgattaacatatcatgcaattcatttatcaaagtatgcaattcaggccaggcgcagtggctaattcctataatgctaagattttgggcggctgaggcaggtggattgcttgagttcaggagtttgcaattagcctgggcaacatgggaaaacagcatctctagcaaaaatacaaaaattagctgggtatggtggctcatgcctggtagtcccaactactc-ggggacatgagactggaagatcacttgagcccagaaggcataggttgcagtgagaccagatggcgccactacactacaacgtgggtgacagaaggagaccctgtctctaaataaataa----aaaaagaaagtatacaattca-tggtttttagaatattcacagagctgtgcatccatcaccacag----tcttagaaatgattacccacttacgagttagccacttatgagtgagaaaccctcacctcttagccactacctcctacttttcccatgttcctgtgtcttcataggcaaccactgatttattttctgtcattgtagttttgcctaatctggaccttttatagaaatagaactgtacaatgtgtgatcttttgtggtttgctttttcttctcttagcacaatgttttcaaatttctttcagattatagtgtgtatcaggatttctttccttttatagctgagtaatagtt--tgtttatccattcatcagttgatggacagttgtgttgtttctgtgtattcgctgtcatgagtcagactgttaggagcactcatatgtaagtttcagtgtgaaaaaatatttttatttctcttggatttacacccaggagtgaaattgttgcattatgtgattactatacatttagcctttgagaaactgccacgttgtttttcaaagtgattacaccagtcaggcacagtagctcacacctttaatctcaggtattcgggaggctgagtttggaggattgtcttagctcaggagttcaggaccagcctgggcaacatagggagacAATATCTTGA-TTTTTGAAAAAGTCAAATGCCAAGA----AAACACAcaaa--------------ttgattacaccattttatgttcccaccagtaatgtatgtgagttccaattattccacattgttaccaaC-ttttttttttttttggagacaaaatcttgctctgttac i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90597727 1488 - 133323859 ctctgttgcccagactgtagtgcagtggtgccatctcggctcactacaacctctacctccctggttcaagcaattcccctgcctcagcctcccaagtaactgggattacaggtgcacatcaccatgcctggctaagttttttgtatttttagtagagatggggcttcaccatattggccagactggtctccaactcctgacctcacgcagtctgcccacctcagcctcccaaag-tgctgggattataggtgtgaaccactac-----gcatggccTTTTTTAAAAtaataattttattgaaatatgattaac--atcatatatttcatttatcaaagtatgcaattcaggcagggtgcagtggctaattcctataatgctaagactttgggatgctgaggtaggtggattgcttgagttcaggagttcaagactagcctgtgcaacatggcaaaacagcatctctaa-aaaaatacaaaagttagctgtgtgtgttggctcatacct-gtggtcccagctactt-ggggacatgaggctgggagatcacttaagcctagaagacataggttgcagtgagaccagatggtgccactgcact--agtgtcagtgacagaaagagaccatgtctctaaataaaaaaagaaagaaaaaaagtgtgtgattcagtagtttttagaatattcacagagctgtgcatctatcaccacagtcacttttaaaagtgattatccacttatgagttacccacttacgaatcagaagccctcacctcttagcagctacctcctacttccccaacaatcctgtgtcttcataggcaatcactggtttattttctgtcattagtattttgcctaatctggaccttttacagaaatagaattgtacaatgtatgatcttttatagtttgcttttttttctcttagcacaatgttttcaaatttctttcatgttata----gtatcagtatttcttaccttttttagctgaataatagtttatgtttagccattcattagctgatggacatttgtattgtttctgcgtatcggccatcatgagtaatgctactatgggcactcatatgcaagtttttgtgtgaacatatatttttatttctcttggatttatacccaggagtgaaattgttgcattatgtgataactatacacttagcctttgagaaactgccatgttgtttttcaaagtggttacaccagtcaggcttggtggctcacacctttaatctcagttatctgggaggctgactttggaggattgctttagcccaggacttcaggaccagcctgggcaacataggtagacAATATCTTGGTTTTTTTAAAAAATCAAATGACAAGAAAagaaacacccaaattgatgacaccattttgatgacaccattttatgttcccaccagtaatgtatgtgggttccaattcttcctcattgtcaccaacttttttttttttttttgagacaaaatctttctttgtcac i rheMac2.chr9 I 73 C 0 a score=231585.000000 s hg19.chrUn_gl000243 42154 1144 + 43341 gcaggctggagtgcagtgacatgaacatggccagtgcagctgtgaccttccaggcacaagtgatcctctcacctcagcctcctaagtagctgggacttacaggtgcatgctatcatgagcagctgatttttacagtttttggtagaaatggggtgttgtcatgtagcccaggtttgtgtcaaactcctgagctcaagtgatctgcctgcttcagcttccggaagtgctgagattacaggtgtgtgccaccatgcccgactggtgtaaccactTTGGAAAGCAGCCACTGAGCCCGGCCTTCACCAGTATA--CCAATGTTTGTTAATATCGttttatttt-----ttacaatttttaaatttttaaaaacttattatttt--aCCTGTATTATTGATTATAATAAACAACGAATAATTTTGTAGTAGAGTTGAGTCCCCCCAAAAAGTATTTATTGTTTAACTGAAGTAGTTTTTTTTTTAA-CCTGGATATATATTTTTT-CATTTTCACTTTATTTTTAGTGtttatttttaaaaattatttatatGTAtttttattttaataggtgtttgagaaacaggtggtgtttggttccatgaataagttcttcagtgtttatttctgaaatGT---AGTACCCCTCATTACTCATTAAATTATATATTAAGTCATTATAAAATCATTAATAAACCAAGGACTTTAGTAAAATGGGAATTTTATTTTAACTTGCAACCTGGGACGTAACTGTCAAAAAAATTAGAGAAATTACCACATTAAGGTTTTCAAATCTTGAACTGAAAAATGAAAACCTTGGTGCACCTAAGAACCACCAGCCCACTGGTCAAAGTGAACAAAACTAAATGAA----AAAATAAAACCAAGAAAACCAAACTCAGGATTATTAGGTATTCTGTAATGCTATTTTATCTCTGTACTCACAGAAAATAattattattattattactattattattattattattattattttgatatggagcctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagccttcagagtagttgggattacaggcaggttccaccatgcctggctaactt--gtatttttgatagagac s ponAbe2.chr2a 109896158 1116 - 113028656 ccaggctgtagtgcagtagcatgaacatggccagtgcagctgtgaccttccaagcactagtgatcctctcacctcagcctcctaaataactgggacttacaggtgcatgctatcatgtacggctgatttttacagtttttggtagagatggggttttgccatgtagcccaggtttgtgtcaaactcctgagctcaactgatctgcctgcttcagcctctggaagtgctgagattacaggtgtgtgccaccaaacccgactGGTGTAACCACTTTGGAAAACAGCCACTGAGCCTGGCCTTCACCAGTATATACCaatatttgttaatatctttttatttt-----ttactatattttcatttttaaaaac--attatttt-taCCTGTATTATCAATTATAATAAACAACAAATAATTTTGTAGTAGAGTTGAGTCCCCCCAAAAAGTATTTGTTGTTTAACTGAGATAGTTTTTTCTTTAAACCTGGATGTATATTTTTT--ATGTTCACtttattttta-------tttttaaaaattatttatatatatttttactttaataggtatttgagaaacaggtggtgtttggtttcatgaacaagttcttcagtgttgatttctgaaatgttgtagtacccgtcattcctcattaaattatatattaagtcattataaaatcattaataaaCCAAGGATTTTAGTAAAATGGGAATTTTATTTTAATTTGAAACCTGGGATGTAACTGTCAAAAAATTTAGAGAAATTACCCCATTAAGATTTTAAAATCTTGAACAGAAAAATGAAAACCTTGGTGCACCTAAGAACCACCAGCCCACCGGTCAAGGTGAACAAAACtaaataaaaaataaaataaaaCCAATAAAACCAAACTCAGGATTATTAGATATTCTGCAATGCTATTTTATCTTGAGACTTGCAGAAAAGA------------------------------GTTATTATTGttttgatatggagtctcactctgtcacccaggctggagtgcagtggtgcattcgtggctcacggcaacctctgcctcctgggttcaagtgattctcctgcctcagccttcacagtaattgggattacaggcaggctccaccatgcctggctaactt-agtatttttggtagagac i ponAbe2.chr2a C 0 C 0 s rheMac2.chr9 90599215 1109 - 133323859 tcaggctggagtgcagtggcatgaacatggtcagtgcagctgtgacctctctggcacaa-tgatcttctcacctcagcctcccaagtagctgggacttataggtgtatgccttcatatgtggctgatttttacattttttggtagagatagggttttgccatgtaacccag------gtcaaacttctgagctaaagtgatctgcctgctttggcctctggaagtgctgggattataggtgtgtgccaccacacccaactGGTGTAACCACTTTGGAAAACAGCCACTGAGTCCAGCCTTCACCAATATA--CCAGTATTTGTTAAAATCTATTTTTTTTTTTACTTACTATTCTTCATTTTTTAAA-----ATTATTTTGTATCTGTCTTATTAATTATAATAAACAGCAAATAATTTTGTAGTAGAGTTGACAGCCTCCAAAAAGTATTTGTTGTTTAACTGAAATACAGTTTTTTTAAA-CCTGGatatatatttttttcattttcattttattttta---gttatttttaaaaattattGAT---tttttttattttaataggtgtttgggaaacaggtggtgtttggttctatgaataagttatttagtgttgttttctgaaattttatagcatccCTTATTACTCATTAAATTATATATTAACTC---ATGAAATCATTAATAAACCAAGGACTTTAGTAAAATGGAAATTTTATTTTAACTTGTAACCTGAGAAATAACTATCCAAAAA-TCAGAGAAATTACCACATTAAAGTTTTAAAATCTTGAGCCTAAAAATGAAAAC--TGGTGCACCTAAGAACCACAGGCCCACTGGTCAAGGTGAACAAAACTAAATTTAAAACAAAGTAAAACCAAGAAAACCAAACTCAAAATTATTCAGTGTTCTGTAATGCTGTTTTAT-TTGGGACTCACAGAAAGTA------------------------GTTACTATTATTATTAttttgacatggattctca--ctgtcacccaggctggggtgcagtggtatgatcttggctcaatgcaacctctgcctctggggttc-agtgattctcctgcctcagcctccagagtagtcgggattacaggcatgctcccccaagcctggctaacttttgtatttttagtagagac i rheMac2.chr9 C 0 N 0 a score=3929.000000 s hg19.chrUn_gl000243 43298 41 + 43341 agggtttcaccatgttggccaggctggtctgaaactcctga s ponAbe2.chr2a 109897274 41 - 113028656 agggtttcaccatgttggccaggctggtctgaaactcctga i ponAbe2.chr2a C 0 N 0